##maf version=1 scoring=roast.v3.3 a score=1911.000000 s hg38.chr17_JH159146v1_alt 0 1 + 278131 A s panTro4.chr17 66116545 1 - 82630442 A i panTro4.chr17 N 0 C 0 s nomLeu3.chr19 47867968 1 - 81552678 A i nomLeu3.chr19 N 0 C 0 s rheMac3.chr16 52980529 1 + 80904711 A i rheMac3.chr16 N 0 C 0 s macFas5.chr16 52502967 1 + 80997621 A i macFas5.chr16 N 0 C 0 s papAnu2.chr16 47548344 1 + 74645514 A i papAnu2.chr16 N 0 C 0 s chlSab2.chr16 9814411 1 - 75148670 A i chlSab2.chr16 N 0 C 0 a score=110190.000000 s hg38.chr17_JH159146v1_alt 1 44 + 278131 ATTTCATATGACGCAAGCATATTTTAAATAGAGTAACCAAAACA s panTro4.chr17 66116546 44 - 82630442 ATTTCATATGACGCAAGCATATTTTAAATAGAGTAACCAAAACA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47867969 44 - 81552678 ATTTCATATGACGCAAGCATATTTTAAATAGAGTAACCAAAACA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52980530 44 + 80904711 ATTTCATGTGACGCAAGCATATTTTAAATAGAGTAACCAAAACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52502968 44 + 80997621 ATTTCATGTGACGCAAGCATATTTTAAATAGAGTAACCAAAACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47548345 44 + 74645514 ATTTCATGTGACGCAAGCATATTTTAAATAGAGTAACCAAAACA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9814412 44 - 75148670 ATTTCATGTGACGCAAGCATATTTTAAATAGAGTAACCAAAACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112656607 44 + 159171411 ATTTCATGTGATGCAAGCATATTTGAAATAGAGTAACCAAAGCA i calJac3.chr5 N 0 C 0 a score=60168.000000 s hg38.chr17_JH159146v1_alt 45 21 + 278131 AATAGATTCAAATGGAATCTA s panTro4.chr17 66116590 21 - 82630442 AATAGATTCAAATGGAATCTA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47868013 21 - 81552678 AATAGATTCAAATGGAATCTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52980574 21 + 80904711 AATAGATTCAAATGGAATCTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52503012 21 + 80997621 AATAGATTCAAATGGAATCTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47548389 21 + 74645514 AATAGATTCAAATGGAATCTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9814456 21 - 75148670 AATAGATTCAAATGGAATCTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112656651 21 + 159171411 AATAGATTCAAATGGAATCTA i calJac3.chr5 C 0 C 0 s mm10.chr11 99406674 21 + 122082543 AATACATCTAGGTAGAAAATA i mm10.chr11 N 0 C 0 a score=355806.000000 s hg38.chr17_JH159146v1_alt 66 113 + 278131 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTTCTGCGCCTTAATAAGGTAGGGTTTGTTCATTCAGTCTTTCCAAAGATAAGTGTTGGAAAA-TTTAGA------ s panTro4.chr17 66116611 113 - 82630442 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTTCTGCGCCTTAATAAGGTAGGGTTTGTTCATTCAGTCTTTCCAAAGATAAGTGTTGGAAAA-TTTAGA------ i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47868034 113 - 81552678 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTGCTGTGCCTTAATAAGGTAGGGTTTCTTCGTTTAGTCTTTCCAAAGATAAGTGTTGGAAAA-TTTAGA------ i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52980595 113 + 80904711 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTGCTGTGCCTTAATAAGGTAGGGTTTGTTCGTTCAGTCTTTCCAGAGATAAGTGTTGGAAAA-TTTAGA------ i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52503033 113 + 80997621 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTGCTGTGCCTTAATAAGGTAGGGTTTGTTCGTTCAGTCTTTCCAGAGATAAGTGTTGGAAAA-TTTAGA------ i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47548410 113 + 74645514 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTGCTGTGCGTTAATAAGGTAGGGTTTGTTCGTTCAGTCTTTCCAGAGATAAGTGTTGGAAAA-TTTAGA------ i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9814477 113 - 75148670 TGCAAACCATCCTCTT--TGCTTCCTTTGTGATGGACACTCCTTAGCTGCTGTGCCTTAATAAGGTAGGGTTTGTTCGTTCAGTCTTTCCAGAGATAAGTGTTGGAAAA-TTTAGA------ i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112656672 111 + 159171411 TGCAAGGCATCCTC----TGCCTCCTTTGTGGTGGCCGCTGCTCAGCTGCCGTGCCTTGATAAGGTAGAGTTTGTTCGTTCAGTCTTTCCAAAGATAAGTGTTGGAAAA-TTTGGA------ i calJac3.chr5 C 0 C 0 s mm10.chr11 99406695 114 + 122082543 CGCAAGGCATCCTCTTAATGCCTCC-CTGTACTGGATGCTGCTTATCTGTCGTATCTTGATAAGCGTGGGTTTGTTCACTCAGCATCACCAGAGGTGAGGGGTGGAAAc-ttgaga------ i mm10.chr11 C 0 I 289 s canFam3.chr9 39236360 122 - 61074082 tgcaaagcatcttcttcctgcctcctgtacaATGGATACTGCTTAGCTGCTGTGTATTGATAAATTTGAGTTTGTTTATTCAGTCTTACTAAAGATAAGTGGTGGAAACTTTTAGAGTTATA i canFam3.chr9 N 0 C 0 a score=53941.000000 s hg38.chr17_JH159146v1_alt 179 20 + 278131 GTTAATAAATCAGTGGATAA s panTro4.chr17 66116724 20 - 82630442 GTTAATAAATCAGTGGATAA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47868147 20 - 81552678 GTTAATAAATCAGTTGATAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52980708 20 + 80904711 GTTAATAAATTAATGGATAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52503146 20 + 80997621 GTTAATAAATTAATGGATAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47548523 20 + 74645514 GTTAATAAATTAATGGATAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9814590 20 - 75148670 GTTAATAAATTAATGGATAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112656783 20 + 159171411 GTTAAGAAATCAATAGATAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39236482 20 - 61074082 GTTAATAAATAAGTAGAGAA i canFam3.chr9 C 0 C 0 e mm10.chr11 99406809 289 + 122082543 I a score=640947.000000 s hg38.chr17_JH159146v1_alt 199 249 + 278131 AAATTCAATGACTATTTCAAGAAAATAATAGAAGAAATATATCGCCACCATTCAATGTTTGTGCAACCAGTGTTTATTGAGTGCTTTTAATGGTACCTAGAGAGTAATACAGGTggtcaagcacagtggcttatacctgtaatccaagaactttgggaggctgaggtggacagattgcttgagcccaggagAGTAATACAG--GCATTATTCCAGCTTTTACTGAGTGAATATTCTAGCATTTGTACGTAA s panTro4.chr17 66116744 249 - 82630442 AAATTCAATGACTATTTCAAGAAAATAATAGAAGAAATATATCGCCACCATTCAACGTTTGTGCAACCAGTGTTTATTGAGTGCTTTTAATGGTACCTAGAGAGTAATACAGGTggcccagcacagtggctcatgcctgtaatccaagaactttgggaggctgaggtggacagatcgcttgagcccaggagAGTAATACAG--GCATTATTCCAGCTTTTACTGAGTGAATATTCTAGCATTTGTACGTAA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47868167 249 - 81552678 AAATTCAATGAATATTTCAAGAAAATAATAGAAGAAATATATCGCCACCATTCAATGTTTGTGCAACCAATGTTTATTGAGTGCTTTTAATGGTACCTAGAGAGTAATACAGGTggcccagcacagtggctcatgcctgtaatccaagaaatttgggaggctgaagtggacagatcgcttgagcccaggagAGTAATACAG--GCATTATTCCAGCTTTTATTGAGTGAATACTCTAGCATTTGTACGTAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52980728 249 + 80904711 AAATTCAATGACTATTTCAAGAGAATAATAGGAGAAATATATTGCCACCATTCAATGTTTGTGCAACCAATGTTTATTGAGTGCTTTTAATGGTACCTAGAGAGTAATACAGGTggcccagcacagtggctcatgcctgtaatcccagaactttgggaggccgaggtggacagatcgcttgatcccagcagAGTAATACAG--ACATTATTCCAGCTTTTATTGAGTGAATATTCTAGCATTTGTACGTAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52503166 249 + 80997621 AAATTCAATGACTATTTCAAGAGAATAATAGGAGAAATATATTGCCACCATTCAATGTTTGTGCAACCAATGTTTATTGAGTGCTTTTAATGGTACCTAGAGAGTAATACAGGTggcccagcacagtggctcatgcctgtaatcccagaactttgggaggccgaggtggacagatcgcttgatcccagcagAGTAATACAG--ACATTATTCCAGCTTTTATTGAGTGAATATTCTAGCATTTGTACGTAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47548543 249 + 74645514 AAATTCAATGACTATTTCAAGAGAATAATAGGAGAAATATATTGCCACCATTCAATGTTTGTGCAAccaatgtttattgagtacttttAATGGTACCTAGAGAGTAATACAggtggcccagcacagtggcttatgcctgtaatcccagaactttgggaggccgaggtggacagatcgctTGATCCCAGCAGAGTAATACAG--ACATTATTCCAGCTTTTATTGAGTGAATATTCTAGCATTTGTATGTAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9814610 248 - 75148670 AAA-TCAATGACTATTTCAAGAGAATAATAGGAGAAATATATTGCCACCATTCAATGTTTGTGCAACCAATGTTTATTGAGTACTTTTAATGGTACCTAGAGAGTAATACAGGTggcccagcacagtggcttatgcctgtaatcccagaactttgggaggccgaggtggacagatcgcctgatcccagcagAGTAATACAG--ACATTATTCCAGCTTTTATTGAGTGAATATTCTAGCATTTGTACGTAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112656803 248 + 159171411 AAATCTGATGAATATTTCAAGAAAATAATAGAAGAAATATATTGCCACCATTCAGTGTTTGTGCAACAAATG-TTATTGAGTGCTTTCGATGGTACCTAGAGAGTAATACAGGTggcccagtgcagtggcttatgcctgtaatcccagcacattgggagacggaggtggacagatcacttgatcccaggagAGTAATACAG--GCATTATTCTGGCTTTTATTGAATGAATCGTCTAGCGTTTGTATGTAt i calJac3.chr5 C 0 I 319 s mm10.chr11 99407098 148 + 122082543 AGATCTGGCGGATATTTCTAGAAAACAA--------------------CATTCAATGTTTATGTAAGAAATGCTTACTGAGCACTTTTAACAT------------------GGCAGCTAAGTACTGGAGCT----------------------------------------------------CCCTAGATAGCAACACGG--G---TGTTCCAGTTTTTATTCAG----TAGTTTTGACTTCATGA---- i mm10.chr11 I 289 C 0 s canFam3.chr9 39236502 176 - 61074082 AAATATCTTGACTGTTTCCAGAAAATAATAGAAGAAATATATGAACACTTTTCAGTattaacgcaactaatgtttattgagtgccttttatg-------------------------------tagtaccctatgc-------------------------------------------taagtcctgggga-tagcacagtagtgTTACTCCAACTTTTATTGAGTGGATAGTCTAGCACTTGTACACAA i canFam3.chr9 C 0 C 0 a score=285852.000000 s hg38.chr17_JH159146v1_alt 448 96 + 278131 TTCTGTGCACAGGTattcaacaagtattga-ttgtctcct--------atgcagtagggtatatgtgctgttttatgcactgtgc----tagatgccagggctacagtg s panTro4.chr17 66116993 96 - 82630442 TTCTGTGCAcatgtattcaacaagtattga-ttgtctcct--------atgcagtagggtatatgtgctgttttatgcactgtgc----tagatgccagggctacagtg i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47868416 96 - 81552678 TTCTGTGCAGATATattcaaccagtattca-ttgtctcct--------atgcagtagggtatatgtgctgttttatgcactgtgc----tagatgccagggctacagtg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52980977 96 + 80904711 TTCTGTGCAcatatattcaacaagtattga-ttgtctcct--------atgcagtaggctatatgtgctgtttcatgcactgtgc----tagatgccagggctacagtg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52503415 96 + 80997621 TTCTGTGCAcatatattcaacaagtattga-ttgtctcct--------atgcagtaggctatatgtgctgtttcatgcactgtgc----tagatgccagggctacagtg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47548792 96 + 74645514 TTCTGTGCACATATATTCAACAAGTATTGA-TTGTCTACT--------ATGCAGTAGGCTATATGTGCTGTTTCATGCACTGTGC----TAGATGCCAGGGCTACAGTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9814858 96 - 75148670 TTCTGTGCAcatatattcaacaagtattga-tagtctcct--------atgcagtaggctatatgtgctgtttcatgcactgtgc----tagatgccagggctacagtg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112657370 108 + 159171411 TTCTGTGCACGTATACCCAACAGGTATCGA-TTGGATACTGAATAGGAATTCAGTAGGCTATATGtactgttttatgcactgtacgagatggatgccagggctacagtg i calJac3.chr5 I 319 C 0 s mm10.chr11 99407246 91 + 122082543 CTTCATGCACGCGTATCCAGTAAGTACTGA-CCACCTCTC----------GCAGTGGGCCACAAGTGCTGTTTTAGACCCTGTTC----TGGATGTCAG---TACGgtg i mm10.chr11 C 0 I 1083 s canFam3.chr9 39236678 96 - 61074082 TTCCATGCACACATattcagcaaatactgatttttttcct--------acacagtgggctaga-gtgctgttttatatcctgggc----tggacaccagggctgcagtg i canFam3.chr9 C 0 C 0 a score=93059.000000 s hg38.chr17_JH159146v1_alt 544 38 + 278131 gagggcaaaacag-acatggccgctgcccttagagagaa s panTro4.chr17 66117089 37 - 82630442 gagggcaaaacag-acatggcccctgccc-tAGAGAGAA i panTro4.chr17 C 0 M 336 s nomLeu3.chr19 47868512 38 - 81552678 gaggacaaaacag-acatggcccctgcccttagagagaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52981073 38 + 80904711 gagggcaaaacag-acacagcccctgcccttagagagaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52503511 38 + 80997621 gagggcaaaacag-acacagcccctgcccttagagagaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47548888 38 + 74645514 GAGGGCAAAACAG-ACACGGCCCCTGCCCTTAGAGAGAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9814954 38 - 75148670 gagggcaaaacag-acacggcccctgcccttagagagaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112657478 38 + 159171411 gagggcaaaacag-acatggcccccgcccttagggagag i calJac3.chr5 C 0 C 0 s canFam3.chr9 39236774 31 - 61074082 gaaggcaaaacagtagagag--------cttagagatct i canFam3.chr9 C 0 C 0 e mm10.chr11 99407337 1083 + 122082543 I a score=26334.000000 s hg38.chr17_JH159146v1_alt 582 11 + 278131 tgcagtggtag s nomLeu3.chr19 47868550 11 - 81552678 tgcagtggtag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52981111 11 + 80904711 tgcagtggtag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52503549 11 + 80997621 tgcagtggtag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47548926 11 + 74645514 TGCAGTGGTAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9814992 11 - 75148670 tgcagtggtag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112657516 11 + 159171411 tgcagtggtgg i calJac3.chr5 C 0 C 0 s canFam3.chr9 39236805 11 - 61074082 tacagtgggag i canFam3.chr9 C 0 C 0 e mm10.chr11 99407337 1083 + 122082543 I e panTro4.chr17 66117126 336 - 82630442 M a score=252774.000000 s hg38.chr17_JH159146v1_alt 593 122 + 278131 agccagacattatttcaatattcatacaaataaatgtataattgcaaattgcgctaagagctgtgaaggataactacagtatagtatgagaaggtagaataggagaacctgacttggttaat-- s panTro4.chr17 66117463 122 - 82630442 AGCCAGACATTATTTCAATATTCATACAAATAAATGTATACCCTCTAATTGTGCTAAGAGCTGTGAAGGATAACTACCGTATACTTTTAGAAGGTAGAATAggagaacctgacttggttaat-- i panTro4.chr17 M 336 C 0 s nomLeu3.chr19 47868561 122 - 81552678 agccagacattatttcaatattcatacaaataaatgtataattgcaaattgtgctaagagctgtgaaggataactacattatagtatgagagggtagaataggagaacctgacttggttaat-- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52981122 107 + 80904711 agctggacattatttcaatattcatacaaa---------------aaattgtgctaagagctgtgaagcataactacagtatagaatgagagggtagaataggagaacctgacttggttaat-- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52503560 107 + 80997621 agctggacattatttcaatattcatacaaa---------------aaattgtgctaagagctgtgaagcataactacagtatagaatgagagggtagaataggagaacctgacttggttaat-- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47548937 107 + 74645514 AGCCGGACATTATTTCAATATTCATACAAA---------------AAATTGTGCTAAGAGCTATGAAGCATAACTACAGTATAGAATGAGAGGGTAGAATAGGAGAACCTGACTTGGTTAAT-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9815003 107 - 75148670 agccggacattatttcaatattcatacaaa---------------aaattgtgctaagagctatgaagcataactacagtatagaatgagagggtagaataggaaaacctgacttggttaat-- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112657527 121 + 159171411 agacagacattatttcaatattcacacaaataaatgaagaattgcaaattgtgctaagagctgtgaaggataaata-agtattctatgagagggtagcataggagaacctgattcggttaat-- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39236816 97 - 61074082 aagcaggcactaattcagtagttgtgcaaa---------------taaatacgtaagaag------------accacagtgtattatgagagtgtataataggaaaacccaatgtggttatcat i canFam3.chr9 C 0 C 0 e mm10.chr11 99407337 1083 + 122082543 I a score=1622981.000000 s hg38.chr17_JH159146v1_alt 715 626 + 278131 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactaggattgttaactaggccaaaatgggggtggaggctcattctagg-taaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGaatttacttgactgtagtattgctgtcactcagtatatgtatatcaaaacctcat------atgctgtatatcttaaatatatacaaAAA------TAAAGTAaaca---agaccagtaggtttggagaagatagagggggaga--------gagggcacacgatttgaaagagggtagagggggccaggccaggccataccttgctgggttttggtctttattccaaggacaataggaagcctttgaaggcctttaagcaatggagtgactggatcagc----tttttcaaaatg--atccccccagctctggtggaaagagtggaagagaggtgggtacaggtggaagctgtgtggtcagccag--------------gagagagac-ata------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCAGATATGGCCAGGATATGTATAG-GTATCTGTTGAATGAATGAATAAATAAATCTAGGG--TCAGGAGACTTGGAGCTTGACCTAGTTAAAAAGCTACAATTGAAAGATTTTTAGA s panTro4.chr17 66117585 626 - 82630442 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactaggattgttaactaggccaaaatgggggtggaggctcattctagg-taaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGaatttacttgactgtagtattgctgtcactcagtatatgtatatcaaaacctcat------atgctgtatatcttaaatatatacaaAAA------TAAAGTAaaca---agaccagtaggtttggagaagatagagggggaga--------gagggcacatgatttgaaagagggtagagggggccaggccaggccataccttgctgggttttggtctttattccaagggcaataggaagcctttgaaggcctttaagcaatggagtgactggatcagc----tttttcaaaatg--atccccccagctctggtggaaagagtggaagagaggtgggtacaggtggaagctgtgtggtcagccag--------------gagagagac-ata------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCAGATATGGCCAGGATATGTATAG-GTATCTGTTGAATGAATGAATAAATAAATCTAGGG--TCGGGAGACTTGGAGCTTGACCTAGTTAAAAAGCTACAATTGAAAGATTTTTAGA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47868683 626 - 81552678 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactaggattgttaactaggccaaaatgggagaggaggttcattctagg-taaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGaatttacttgactgtagtgttgctgtcactcagtatatatatatcaaaacctcat------atactgtatatcttaaatatatacaaAAA------TAAagcaaaca---agaccagtaggtttggtgaagatagagagggaga--------gaaggca-acgatttgaaagagggtagagggagccaggccaggccataccttgctgggttttggtctttattccaagggcaataggaagcctttgaaggcttttaagcaatggagtgactggatcagc----tttttcaaaatg--atccccccagctctggtgtagagagtggaagagaggtgggtacagatggaagctgtgtggtcagccag--------------gagagagac-at-------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCAGATATGGCCAGGATATGTATAG-GTATCTGTAGAATGAATGAATAAATAAATCTAGGGATTCAGGAGACTTGGAGCTTGACCTAGTTAAAAAGCTACAATTGAAGGATTTTTAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52981229 622 + 80904711 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactatgattgttatctaggccaaaatgggggaggaggcttattctaggttaaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGAGTTTActtgactgtagtattgctgtcactcagtatatgtatatcaaaacttcat------atactgtacatcttagatatatacaaAAA------TAAAGTAaaca---aggccagtaggtttggtgaagataga--gggaga--------gaaggcacacaatttgaaggagggtagaaggggccaggccaggccataccttgctgggttttggtctttattccaagggtaataggaagcctttgaagggttttaagcagtggagtgactggatcagc----tttttcaaaatg--attcccccagctctggtggagacagtggaagagaggtgggtgcaggtagaag-tgtgtggtcagctag--------------gtgagagac-atg------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCAGATATGTCCAGGATATGCATAG-GTATCTGTTGAATGAATG----AATAAATCTAGGGATTCAGGAGACTTGGAGCTTGACCTAGTGAAAAAGCTACAACTGAAGGATTTTTAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52503667 622 + 80997621 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactatgattgttatctaggccaaaatgggggaggaggcttattctaggttaaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGAGTTTActtgactgtagtattgctgtcactcagtatatgtatatcaaaacttcat------atactgtacatcttagatatatacaaAAA------TAAAGTAaaca---aggccagtaggtttggtgaagataga--gggaga--------gaaggcacacaatttgaaggagggtagaaggggccaggccaggccataccttgctgggttttggtctttattccaagggtaataggaagcctttgaagggttttaagcagtggagtgactggatcagc----tttttcaaaatg--attcccccagctctggtggagacagtggaagagaggtgggtgcaggtagaag-tgtgtggtcagctag--------------gtgagagac-atg------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCAGATATGTCCAGGATATGCATAG-GTATCTGTTGAATGAATG----AATAAATCTAGGGATTCAGGAGACTTGGAGCTTGACCTAGTGAAAAAGCTACAACTGAAGGATTTTTAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47549044 624 + 74645514 --GAG-GGG-------------------------------------------------------------CATTTGAGTTAGGACCTAAC-TGGTGACTAGGATTGTTAACTAGGCCAAAATGGGGGAGGAGGCTCATTCTAGGTTAAAGAGGGAAAGTTTGTGA-GAAGCTGCCAGAGTGGGAAGGAGCATGGCGTTAGAGTTTACTTGACTGTAGTATTGCTGTCACTcagtatatgtatatcaaaacttCAT------ATACTGTACATCTtagatatatacaaaaa------taaagtaaaca---agGCCAGTAGGTTTGGTGAAGATAGA--GGGAGA--------GAAGGCACACAATTTGAAGGAGGGTAGAgggggccaggccaggccatACCTTGCTGGGTTTTGGTCTTTATTCCAAGGGCGATAGGAAGCCtttgaagggttttaagcagtgGAGTGACTGGGTCAGCT---TTTTTCAAAATG--ATCCCCCCAGCTCTGGTGGAGACAGTGGAAGAGAGGTGGGTGCAGGTGGAAGTTGTGTGGTCAGCTAG--------------GTGAGAGAC-ATG------------AATAGT--GGCTTGGA-----------------------------------------------------------------TG---AGGAGGCAAAATACCAGATATGTCCAGGATATGCATAg-gtatctgttgaatgaatg----aatgaatctaggGATTCAGGAGACTTGGAGCTTGACCTAGTTAAAAAGCTACAACTGAAGGATTTTTAGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9815110 623 - 75148670 --gag-ggg-------------------------------------------------------------catttgagttaggacctaac-tggtgactaggattgttaactaggccaaaatgggggaggaggctcattctaggttaaagagggaaagtttgtga-gaagctgccagagtgggaaggagcatggcgtTAGaatttacttgactgtagtattgctgtcactcagtatatgtatatcaaaacttcat------atactgtacatcttagatatatacaaAAA------TAAAGTAaaca---aggccagtagatttggtgaagataga--gggaga--------gaaggcacacaatttgaaggagggtagagggggccaggccaggccataccttgctgggttttggtctttattccaagggtactaggaagcctttgaagggttttaagcagtggagtgactggatcagct---tttttcaaaatg--atccccccagctctggtggagagagtggaagagaggtgggtacaggtggaag-tgtgtggtcagctag--------------gtgagagac-atg------------aatagt--ggcttgga-----------------------------------------------------------------tg---aggAGGCAAAATACCATATATGTCCAGGATATGCATAG-GTATCTGTTGAATGAATG----AATAAATCTAGGGATTCAGGAGACTTGGAGCTTGACCTAGTTAAAAAGCTACAACTGAAGGATTTTTAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112657648 612 + 159171411 --gagaggg-------------------------------------------------------------cattcgaattaggacctgac-tggtgactagga--gttagcctggccaaaatgggggaggaggctcattctagg-taaagagggaaagtctgtga-gaagctgccagagtgggagggaacatcacgtTAGaa-ttacttgactgtagtaatgccgtcactcagtgtatgtatatcaaaacttcat------atactgtacatcttaaatatat-----aA------CAAAATAAACA---AGTCCAGTAGGTTTGgtgaagataga--gagaga--------gaaggcacacaatttgagagggggaagaagg-----ggccaggccataccttgctgagttttggcttttatttcaaggacaatgggaaggctttgaagggttttaagcaatggagtgactagatcagc----ttttttcagatg--atccccccagctgtggtggagagagtggaagggaggtgggtgcaagtggaagctgtgtggtcagcggg--------------gtgagagat-atg------------aatagt--ggcttgga-----------------------------------------------------------------cg---aggAAGCAAAATGCCAGATATGGCCAGCGCATGCTTAG-CTACCTGTTGAATGAATGAATAAATACATCTAGGGATTCAAGAT-CATGGAGCTTGACCTAGTTAAAAAGCTACAATTGAAGG-CTTTTAGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99408420 608 + 122082543 --GGG-AGA-------------------------------------------------------------TATTTGAGCTA-GACCTCGC-TGATGGGCAGGGT--TTAGTTTTACCATGACTGGGTAGAAATACCCCTAAAGG--CAAGAGGAAATGTCCAAAAGGAAGCT----GAGTGGGAAGGAAAAgagggttatattttactggactgtagtac-----tcactgcatgtatgtgtacgtatgtatcatcatatcatgctgtacaccttcattacataTGTGTAGTATTTTAAAATCACTAAGCAGGCCAGTGGAATTGGTGATGATAAA------------------AGACTCCCAGTTTGAGGAAGTACAGACTTGATTGGG--------------ACGGAGCTTTGGTATTTATTCCAAGGATGCT-TGAAGTCTCTGAAGAGTTCTGAGCAATGTGGTGATGAGATCAGC----TCTGT------------------------GAGCAGAGAACAGGAAGGAGCT-GGTACAGGTGGAAGCTGCGTGGGCATCCAGCTTGGCTGGGGCTTGTGATGGCC-ATGGTAATGGGGAACAATAATCAGATCCGGG-----------------------------------------------------------------TACGCAGGAGACACAGAGGCAGGTATGCTCACGATGAACTTAG-CATGTTGTTGGATGAAGG----GATG--TCTATAGTTTCAGGTTGCACGGAGCATGACCTGGGTAAAAAGCCTCAGCAGAAGGATGTATAGA i mm10.chr11 I 1083 I 102 s canFam3.chr9 39236913 657 - 61074082 gggag-ggggtgaggaaggaggaggagtagagacttacagagacgggttgaggctttacagaggaagtaacatctgaattcaaacctgacaaggcaagtagga--gttatccaggccaaaat-gaagaggaagcacattctagg-caaagagggaaagcctgtgg-gaag------gagcggg------------------------------------------------------------------ctttag----------------------------------a------aaagctgaact---aggccagtaggagagatgaag-taga--gaggaaaggcaggtgaaggcacacaatttgagagaggggaaagggggccaggacag-----accttgctagattttggtctttattccaaggactataggaaacctttgaagggttttaagcaataggatggcaggatcagatttgtctttcaaaacaatatcttcctggctgtgacaggaggaacagaatggagggaggtgctagtggaagctgcatga-ctttcag--------------gctagtgatgatg------------aaccat--gacctggaccaggggtggggggcagttgaggggaggttggggagatggagtaaactaactggatcatagatattt---aggaggcagaatgccagatgtggccaggatgtgctTAGCATATTTGTTGAATGAATA----TATAAATCGATGGCCTCAGGAGACCTGGAGCTTGACCTAGTTAAGAAGTTACAGTTGAAGGATTTTTTGG i canFam3.chr9 C 0 C 0 a score=225055.000000 s hg38.chr17_JH159146v1_alt 1341 80 + 278131 TCAACATTGATAGAGGAATAATTTTTCTTTGATTGTTTAGTTAAAGTTCAATTTAACTGAAAGGTAAAAGCCAGTTAAAA s panTro4.chr17 66118211 80 - 82630442 TCAACATTGATAGAGGAATAATTTTTCTTTGATTGTTTAGTTAAAGTTCAATTTAACTGAAAGGTAAAAGTCAGTTAAAA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47869309 80 - 81552678 CCAACATTGATAGAGGAATAATTTTTCTTGGATTGTTTAGTTAAAGTTCAATTTGACTGAAAGGTAAAAGTCAGTTAAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52981851 80 + 80904711 CCAACATTGATAGAGGAATAATTTTTCTTGGATTGTTTAGTTAAAGTTCAATTTGACTGAAAGGTAAAAGTCAGTCAAAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52504289 80 + 80997621 CCAACATTGATAGAGGAATAATTTTTCTTGGATTGTTTAGTTAAAGTTCAATTTGACTGAAAGGTAAAAGTCAGTCAAAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47549668 80 + 74645514 CCAACATTGATAGAGGAATAATTTTTCTTGGATTGTTTAGTTAAAGTTCAATTTGACTGAAAGGTAAAAGTCAGTCAAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9815733 80 - 75148670 CCAACATTGATAGAGGAATAATTTTTCTTGGATTGTTTAGTTAAAGTTCAATTTGACTGAAAGGTAAAAGTCAGTCAAAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112658260 80 + 159171411 CCAACATTGATAGAGGAATCATTTTTCTTGTATTGTTTGGTTAAAGTTCAATTTGACTAAAACGTAAAAGTCAGTTAAAA i calJac3.chr5 C 0 I 339 s canFam3.chr9 39237570 77 - 61074082 CTAATATTGAT---GAAATAACTTTCCTTGGCTTGATTAAGCAAAGTACAATTTGACTGAAATGTATAAATTTGTTAAAA i canFam3.chr9 C 0 C 0 e mm10.chr11 99409028 102 + 122082543 I a score=9828.000000 s hg38.chr17_JH159146v1_alt 1421 3 + 278131 TAA s panTro4.chr17 66118291 3 - 82630442 TAA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47869389 3 - 81552678 TAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52981931 3 + 80904711 TAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52504369 3 + 80997621 TAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47549748 3 + 74645514 TAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9815813 3 - 75148670 TAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112658679 3 + 159171411 TAA i calJac3.chr5 I 339 C 0 s canFam3.chr9 39237647 3 - 61074082 TAA i canFam3.chr9 C 0 I 110 e mm10.chr11 99409028 102 + 122082543 I a score=555790.000000 s hg38.chr17_JH159146v1_alt 1424 222 + 278131 TGCTTTATTATTTGAT------------------TTTTTTTTCTG---------------------------------------------ACAAAATGAAACATAATTTAAATGATCCATA----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCATAAGGACATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAATGCTTTGGAAAGTGCAGCT s panTro4.chr17 66118294 220 - 82630442 TGCTTTATTATTTGAT------------------TTTTTT--CTG---------------------------------------------ACAAAATGAAACATAATTTAAATGATCCATA----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCATAAAGACATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAATGCTTTGGAAAGTGCAGCT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47869392 224 - 81552678 TGCTTTATTATTTGATGA----------------TTTTTTTTCTG---------------------------------------------ACAAAATGAAACATAAATTAAATGATCCATA----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCATAAAGACATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTAAGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAATGCTTTGGAAAATGCAGCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52981934 218 + 80904711 AGCTTTCTTATTTGATGA----------------TCTTTT-TCTG---------------------------------------------ACAAAATGAAACA-----TAAATGATCCGTG----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCCTAAAGATATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAGTGCTTTGGAAAATGCAGCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52504372 218 + 80997621 AGCTTTCTTATTTGATGA----------------TCTTTT-TCTG---------------------------------------------ACAAAATGAAACA-----TAAATGATCCGTG----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCCTAAAGATATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAGTGCTTTGGAAAATGCAGCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47549751 218 + 74645514 AGCTTTCTTATTTGATGA----------------TCTTTT-TCTg---------------------------------------------acaaaatgaaaca-----taaatgatCCATA----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATTATCATAAAGATATAAGATGTTTGGATATATG--TGTATGGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTAGATGATTAAGTTTTCAGAGTGCCGATGCTTTGGAAAATGCAGCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9815816 218 - 75148670 AGCTTTCTTATTTGATGA----------------TCTTTT-TCTG---------------------------------------------ACAAAATGAAACA-----TAAATAATCCATA----GTGAT----------------CCTAAAT-------AGATTTTTAGTTCAGAGATAAATGATCATAAAGACATAAGATGTTTGGATATATG--TGTATAGCAAGTGTTTTATGATACATATTCTACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCGATGCTTTGGAAAATGCAGCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112658682 224 + 159171411 TGCTTTCTTATTTGGTGA-------------CTTTTTTTT-TCTG---------------------------------------------ACAAAATGAAACA--AGTTAAATGACCCATA----ATGAT----------------CCTAAAT-------AGATTTTTAGTTCACAGATAAATTATCATAAAGATACAAGATACTTGGATATACG--TGTATAGCAAGTGTTTTATGATACATATTATACATGTTGGGAATGTAGTTTTATATGATTAAGTTTTCAGAGTGCCAATGCTTTGGAAAGTGCAGCT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39237760 309 - 61074082 tgcttctccctctgcctgtgtctctgcctctctgtctctc-tctgtgtgactatcatgaataaataaataaataaaaTCTTtaaaataaaataaaataaaata-aaataaaataaCCCATATTTCGTGATTTGTCTAAAACCCAAACATAAATGACCCACAAACATTTTACACAGAGACAAGTTATGAT---GGCATAAGGTATTTGGATATATGTTTATATAGCAAGTGTTTTGTGATGCATAGCATGCAATTTTGGAATGTGGTTTTATATGAGCAGGTTTTCAGAATGCCAATGCTTTGGAAAATGCAGCT i canFam3.chr9 I 110 C 0 e mm10.chr11 99409028 102 + 122082543 I a score=1745020.000000 s hg38.chr17_JH159146v1_alt 1646 584 + 278131 AAAAAGTCTCCCTGTGGACAAATTGGCAAATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATGATCTCCTCTTTAATGCAACTGTTACCTGTGTACCCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCACTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCATAGTC--------------ACACAGGGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACCTGAAGGACTTTTTCTTACCCCTAGCCTCTGAGTAATAA-CACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCT--GGATTC-TGATTAGCCTGGATCTAATTCTGTAGTACTAATTTTTGTTCCAGGATTATCTC----T--ATTGGATGCTGATTATATATATTTGTATTTTTT-------AAATGATAAACATTTATTTTATTATTTGTCAGCCTACTCAGTCATATATTAGATAGGCTAG s panTro4.chr17 66118514 584 - 82630442 AAAAAGTCTCCCTGTGGACAAATTGGCAAATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATGATCTCCTCTGTAATGCAACTGTTACCTGTGTACCCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCACTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCAGAGTC--------------ACACAGGGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACCCGAAGGACTTTTTCTTACCCCTAGCCTCTGAGTAATAA-CACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCC--GGATTC-TGATTAGCCTGGATCTAATTCTGTAGTACTAATTTTTGTTCCAGGATTATCTC----T--ATTGGATGCTGattatatatatttgtatttttt-------aaatgataaacatttattttattatttGTCAGCCTACTCAGTCATATATTAGATAGGCTAG i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47869616 584 - 81552678 AAAAAGTCTCCCTGTGGACAAATTGGCAAATAATTGTGTAACATGCTACTTCAGCTTTGTCTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATGATCTCCTCTGTCATGCAACTGTTCCCTGTGTACCCTGGAGGTGACAGATAATCA---TAATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTATTGAGACCTTCCTTTCCCTTGAGCAGTTTTTGTCTTCCCACTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCAGAGTC--------------ACACAGCGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACCCGAAGGACTTTTTCTTACCCCCAGCCTCTGAGTAATAA-CACTGAGAA---AGACTTCATTGTTGTGC-TTTCCTATAACACCG-CTGCC--GGATTC-TGATTAGCCTGGATCTAATTCTGCAGTACTAATTTTTGTTCCAGGATTATCTC----T--GTTGGATGCTGATTATATATATTTGTATTTTTT-------AAATGATAAACATTTATTGTATTATTTATCAGCCTACTCAGTTGCATATTAGATAGGCTAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52982152 586 + 80904711 AAAAAGTCTCCCTCTGGACAAATTGACAAATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATTATCTCCTCTGTCATGCAACTGTTCCCTGTGTACTCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCACTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCAGAGTC--------------ACACAGGGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACCTGAAGGACATTTTCTTACCCCCAGCCTCTGAGTAATAA-CACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCC--GGATTC-TGATTAGCCTGGATCTAATCCTGCAGTACTAATTTTTGTTCCAGGATTATCTG----T--ATTGGATGCTGATTATATACACTTGTATTTTTTTT-----AAATGATAAACATTTATGTTATTATTTATCAGCCTACTCAGTCGTATATTAGATAGGCTAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52504590 586 + 80997621 AAAAAGTCTCCCTCTGGACAAATTGACAGATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATTATCTCCTCTGTCATGCAACTGTTCCCTGTGTACTCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCACTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCAGAGTC--------------ACACAGGGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACCTGAAGGACATTTTCTTACCCCCAGCCTCTGAGTAATAA-CACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCC--GGATTC-TGATTAGCCTGGATCTAATCCTGCAGTACTAATTTTTGTTCCAGGATTATCTG----T--ATTGGATGCTGATTATATACACTTGTATTTTTTTT-----AAATGATAAACATTTATGTTATTATTTATCAGCCTACTCAGTCGTATATTAGATAGGCTAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47549969 583 + 74645514 AAAAAGTCTCCCTCTGGacaaattgacaaataattgtgtaACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTAGCTCCTCAGAAATTATCTCCTCTGTCATGCAACTGTTCCCTGTGTACTCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACCTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCACTGGCCAGCGTTCAgtt--ctatctcctt-cagctctgcaAGCTGTAAAAACACCTTCCAGAGTT--------------ACACAGGGGAA------------------------------CTGAGTAAAATTCTC-CTAACTTCA-CATCACC--AAGGACTTTTTCTTACCCCCAGTCTCTGAGTAATAA-CACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCC--GGATTC-TGATTAGCCTGGATCTAATTCTGCAGTACTAATTTTTGTTCCAGGATTATCTG----C--ATTGGATGCTGATTATatatacttgtatttttttt-----aaatgataaacattt-tgttattatttatcagCCTACTCAGTCGTATATTAGATAGGCTAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9816034 587 - 75148670 AAAAAGTCTCCCTCTGGACAAATTGACAAATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTATAATATTA----TATTGTCC-TTTACCTCCTCAGAAATTATCTCCTCTGTCATGCAACTGTTCCCTGTGTACTCTGGAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTACTGAGACCTTCCTTTCCCTTGAGCAGTTCTTGTCTTCCCGCTGGCCAGCGTTCAGTT--CTATCTCCTT-CAGCTCCGCAAGCTGTAAAAACACCTTCCAGAGTC--------------ACACAGGGGAA------------------------------CCGAGTAAAATTCTC-CTAACTTCA-CATCACCTGAAGGACTTTTTCTTACCCCCAGCCTCTGAGTAATAA-TACTGAGAA---GGACTTCATTGTTGTGC-TTTCCTATAACACCA-CTGCC--GGATTC-TGATTAGCCTGGATCTAATTCTGCAGTACTAATTTTTGTTCCAGGATTATCTG----T--ATTGGATGCTGATTATGTATACTTGTATTTTTTTT----AAAATGATAAACATTTATGTTATTATTTATCAGCCTACTCGGTAGTATATTAGATAGGCTAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112658906 582 + 159171411 AAAATGTCTCCCTCTGGACAAACTGACAAATAATTGTGTAACCTGCTACTTCAGCTTTGTGTCTTTGGTGTTTTAATACTA----TGTTGTCC-TTTAACTCCTCAGAAGTTATCTCCTCTGTCATGCAACTGTTCCCTATGTACCCTGCAGGTGACAGATAATCA---TGATAATGATGACTAAAACTTTCATCAGGTTCTCCTCCCTGCTGAGCCCTTCCTTTCCCTTGAGCAGTTCTCATCTTCCCGCTGGCCAGCATTCAGTT--CTGGCTCCTT-CAGCTCTGCAAGCTGTAAAAACACCTTCCGGACTC--------------ACAGAGGGGAA------------------------------CTGAGTGAAATTCTC-CTAACTTCA-CATCCCCAGCAGGACTTTTTCTTACCCC-AGCCTCTAAGTAATGA-CACTGAGAA-ATGGACTTCACTGTTTTGC-TTTCCTGTAACACCA-CTGCA--GGATTC-TGATTAGCCTGGATCTAATTCTGCAG------TTTTTGTTCCAGGATTCTCTCTCTTT--ATTGGATGCTGattatatata-ttgtatttttt-------taatgataaaaattgatgttattatttatCAGCCTACTCAGTCACATATTAGATAAGCTAG i calJac3.chr5 C 0 I 22 s mm10.chr11 99409130 581 + 122082543 AAAATATCTCCC---GTCTAAATTGACAAATAATTGTGTAACTTGCTATTTTAG---TGTGTCTTGGGAAAGACAACCTGACACGTATTGTCC-CTCCACTCCTTAGAAACAA--TCCCCTGTCATGCAACTGTTCCCCGTGTACCCTCAAGGTGACAGATAGTCA---CGATAACGATGACTCAGGCTACTGTTGG--TCTCCTCCCTGCTGAACCATGCCTTCCCCCTGGGCGACTCTCATCATC-------CCAGCTTTCACCTTGCCAGCTCCCT-CAGCCCCGCAAGCTCTATAAACACTGCCCAGGGTC--------------ACATGGGGGAGAGCCCTGCCACTGGGGACTCCAGCGGGGATCCAAGTGAGTTTCCAGCCAGGTAGA-CAGC-CCTGGGAGACTTCT-----------GCCTCTGCACAAGGAGAACAGGGAA-CTGAGACACACTGCCATGC-TTTTATCTATAACCAGGTGGT--GAATTC-TGATCAGGGTGGATGGGAGGCCACAG------ATTTTGTTCCCAGGTTATCTC----TTACTAGGATGCCGACTGCCTAT--TTTTTTTTTTT-------AACTGATAAAAATTT--------ATCTGCCAGCTTACCCAGATGC-TGTTAGATAAGATAG i mm10.chr11 I 102 C 0 s canFam3.chr9 39238069 608 - 61074082 AAACAGTCTCCCTCTGGATAGATCAGGAAAGAATTGTGTAACCTGCCGCTTTAGCTTTGTACCTGGGCAATTGCGAAGTTA----GATTGTCCTTTTAACTCCTC--GAATGAT---CTCTGTCACGCAGCTGTTGGCTGTGTACCCTGGAGGTGACAGATGATGATGGTGATAATGATGACTAAAATGTTCATCAGGCTCCCCTCCCTGCTAAGACCTACCTTCCCCTAGAGCAATACTCATCTTCCCACTGGTTAGCATTCAGTT--CTTGCTCCTTCCAGCTCTGCAAGCTGTAAAAACACCTTCCAGAGTCTACTGCAGAAGACTCCACTGGGGAA------------------------------CTGAGTCTGATTCTC-TCACCTTCCTCACTTCTTGGGCGACTTTTCTTCACCCCCAGCCTCTGGTTAATGA-GACAGGGAAGCTGGGCCTCTTTATTCTGCGTTGTCTATAGCA-CA-CTGACATGAATTCTTTGTTAGTCTGGATCTAATTCTGCAG------TGTTGGTTTCAGAATCATCTC----TGGATGAGATGCTGATTGTACGTGTTTTTTTTTTTTTTTAAAACAGTGATGGAAATTTACCTTATTATTTATCTACCTACTCAGTTACTTATTAGATAAGATAG i canFam3.chr9 C 0 C 0 a score=22404.000000 s hg38.chr17_JH159146v1_alt 2230 8 + 278131 GGAAGTTT s panTro4.chr17 66119098 8 - 82630442 GGAAGTTT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47870200 8 - 81552678 GGAAGTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52982738 8 + 80904711 GGAAGTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52505176 8 + 80997621 GGAAGTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47550552 8 + 74645514 GGAAGTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9816621 8 - 75148670 GGAAGTTT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99409711 7 + 122082543 -GACATTT i mm10.chr11 C 0 I 1 s canFam3.chr9 39238677 8 - 61074082 GAAAGTTT i canFam3.chr9 C 0 C 0 e calJac3.chr5 112659488 22 + 159171411 I a score=275887.000000 s hg38.chr17_JH159146v1_alt 2238 92 + 278131 AACATTAAAATTA-----TCA-TCCAGAAT-CAGCACATAAGGCTGTTTAAAATGGGTATCCAGTGAAAACACCGTAAAGCACCTTGGGAGGTACTTTT- s panTro4.chr17 66119106 92 - 82630442 AACATTAAAATTA-----TCA-TCCAGAAT-CAGCACATAAGGCTGTTTAAAATGGGTATCCAGTGAAAACACCGTAAAGCACCTTGGGAGGTACTTTT- i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47870208 92 - 81552678 AACATTAAAATTA-----TCA-TCCAGAAC-CAGCACATAAGGCTGTTTAAAATGGGTATCCAGTGAAAACACCATAAAGCACCTTGGTAGGTACTTTT- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52982746 92 + 80904711 AACGTTAAAATTA-----TCA-TCCAGAAT-CAGCACATAAAGCTGTTTAAAATGGGTATCCAGTGAAAACACCATAAAGCACCTTGGGAGGTACTTTT- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52505184 92 + 80997621 AACGTTAAAATTA-----TCA-TCCAGAAT-CAGCACATAAAGCTGTTTAAAATGGGTATCCAGTGAAAACACCATAAAGCACCTTGGGAGGTACTTTT- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47550560 92 + 74645514 AACGTTAAAATTA-----TCA-TCCAGAAT-CAGCacataaagctgtttaaaatggGTATCCAGTGAAAACACCATAAAGCACCTTGGGAGGTACTTTT- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9816629 92 - 75148670 AACGTTAAAATTA-----TCA-TCCAGAAT-CAGCACATAAGGCTGTTTAAAATGGGTATCCAGTGAAAACACCATAAAGCACCTTGGGAGGTACTTTT- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112659510 85 + 159171411 AACATTAAAATTA-----TCA-TCCAGAAT------CATAAGGCTGTTTAAAATGGGTATCCAGTGAAAACACCATAAAGCACCTTGGGAGGTA--TTT- i calJac3.chr5 I 22 C 0 s mm10.chr11 99409719 84 + 122082543 AACATTGAAATTA-----C---TCCACCATCCAGCACATAAGATGGCTTAGAACAGATGTCC--CCAAAACA---TAAAGTATCCTGGGAGT--CCTTT- i mm10.chr11 I 1 C 0 s canFam3.chr9 39238685 98 - 61074082 AACATTAAAATTACTTTGTCATTCCAGAAT-CAGCACATGAGGTTGTGTAAAATGGGTGTTCAGTGAAAACATTTTAAAATATCTTGAAAG-TACCTTAA i canFam3.chr9 C 0 I 373 a score=81337.000000 s hg38.chr17_JH159146v1_alt 2330 33 + 278131 TATCCAATGT-AAATTGTAATATACAATGTAAAA s panTro4.chr17 66119198 33 - 82630442 TATCCAACGT-AAACTGTAATATACAATGTCAAA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47870300 33 - 81552678 TATCCAATGT-AAAATGTAATATACAATGTAAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52982838 33 + 80904711 TATCCAATGT-AAAATGTAATATCCAATGTAAAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52505276 33 + 80997621 TATCCAATGT-AAAATGTAATATCCAATGTAAAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47550652 33 + 74645514 TATCCAATGT-AAAATGTAATATCCAATGTAAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9816721 33 - 75148670 TATCCAATGT-AAAATGTAATATCCAATGTAAAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112659595 34 + 159171411 TATCCCATGTAAAAATGTAATATACAATGTAAAC i calJac3.chr5 C 0 C 0 s mm10.chr11 99409803 29 + 122082543 CATGTAATGT-AAAATGTAA----CAATTTAAGA i mm10.chr11 C 0 I 236 s canFam3.chr9 39239156 33 - 61074082 TATTCTATTT-GCACCGAGGCAACCAAGGAGAAT i canFam3.chr9 I 373 C 0 a score=2396.000000 s hg38.chr17_JH159146v1_alt 2363 2 + 278131 -AC s panTro4.chr17 66119231 2 - 82630442 -AC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47870333 2 - 81552678 -AC i nomLeu3.chr19 C 0 I 1 s rheMac3.chr16 52982871 2 + 80904711 -AC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52505309 2 + 80997621 -AC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47550685 2 + 74645514 -AC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9816754 2 - 75148670 -AC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112659629 2 + 159171411 -AC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39239189 2 - 61074082 AA- i canFam3.chr9 C 0 C 0 e mm10.chr11 99409832 236 + 122082543 I a score=173760.000000 s hg38.chr17_JH159146v1_alt 2365 56 + 278131 TGTATGAAACTTTATCATGTATTTGCCTTTAGATCATAAAAACTGAGGTTATTTTC s panTro4.chr17 66119233 56 - 82630442 TGTATGAAACTTTATCATGTATTTGCCTTTAGATCATAAAAACTGAGGTTATTTTC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47870336 54 - 81552678 TGTATGAAAC--TATCATGTATTTGCCTTTAGTTCATAAAAACTGAGGTTATTTTC i nomLeu3.chr19 I 1 C 0 s rheMac3.chr16 52982873 56 + 80904711 GGTATGAAACTTTATTATGTATTTGCCTTTAGTTCATAAAAACTGAGGTTATTTTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52505311 56 + 80997621 GGTATGAAACTTTATTATGTATTTGCCTTTAGTTCATAAAAACTGAGGTTATTTTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47550687 56 + 74645514 GGTATGAAACTTTATTATGTATTTGCCTTTAGTTCATAAAAACTGAGGTTATTTTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9816756 56 - 75148670 GGTATGAAACTTTATTATGTATTTGCCTTTAATTCATAAAAACTGAGGTTATTTTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112659631 56 + 159171411 TGTATGCAACTTTATCATGTACTTGCCTTTCGTTCATAAAAACTGAGGTTATTTTC i calJac3.chr5 C 0 C 0 s mm10.chr11 99410068 56 + 122082543 TGTATGGTCTTGCCTTGTGCATTTGCATCTAGGCCTTTCAGGTTGACATTATTTTC i mm10.chr11 I 236 C 0 s canFam3.chr9 39239191 54 - 61074082 TGTATGAAACTTTATCATGTATTTACTTTTAGTTCATAAAAACTG--GTTATtttc i canFam3.chr9 C 0 I 229 a score=116759.000000 s hg38.chr17_JH159146v1_alt 2421 43 + 278131 AATAGACTATGTagagtcttacatatagttggtgctaaataaa s panTro4.chr17 66119289 43 - 82630442 AATAGACTATGTagagtcttacatatagttggtgctaaataaa i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47870390 43 - 81552678 AATAGACTATGTAGAGActtacatatagttggtgctaaataga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52982929 43 + 80904711 AATAGACTATGTAGAGActtacatatagttggtgctaaataaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52505367 43 + 80997621 AATAGACTATGTAGAGActtacatatagttggtgctaaataaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47550743 43 + 74645514 AATAGACTATGTAGAGACTTACATATAGTTGGTGCtaaataaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9816812 43 - 75148670 AATAGACTATGTAGAGActtacatatagttggtgctaaataaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112659687 43 + 159171411 AATAGACTCTGTagagacttacacatagttggtgctaagtaaa i calJac3.chr5 C 0 C 0 s mm10.chr11 99410124 43 + 122082543 AGTAGAATACATAGATACTTACAGGCTTGTGATGGCAAAGAAA i mm10.chr11 C 0 I 70 e canFam3.chr9 39239245 229 - 61074082 I a score=1264206.000000 s hg38.chr17_JH159146v1_alt 2464 545 + 278131 agcttgttgaaggaattgaagccatcctcacagaattaagaattctgggcagaaatgtagttataattaagctttaaccaggctgcactttgacccacttccttgtaactaaacatcacataacc-ttagattctgaccatttgcatccccattgttcctgtagatagaaattctaatgttagaaccatgaggcttttgtttaagaattgcttaaacggatcctgaattactgtggaactgctaacgccaaccaatttaaagactcccacagacaaaccaaatga---------------gcatgagagtacagtttctttctctccctgtcctgggacttcaccctgtactcttcaactaatcaacaatctctatgctttggctcactccaaaactcttaaaaaccctcgccccagagtccccgggaagatggattt--ggggttttctcttttctcctcatttgttggccttaccattaaacctctgtctctgttgcaacctggtgcctctgggtattgacttgctgtgaacatccaggcaatgaacctattacagctaca s panTro4.chr17 66119332 545 - 82630442 agcttgttgaaggaattgaagccatcctcacagaattaagaattctggacagaaatgtagttataattaagctttaaccaggctgcactttgacccacttccttgtaactaaacatcacataacc-ttagattctgaccatttgcgtccccattgttcctgtagatagaaattctaatgttagaaccatgaggcttttgtttaagaattgcttaaacggatcctgaattactgtggaactgctaacgccaaccaatttaaagactcccacagacaaaccaaatga---------------gcacgagagtacagtttctttctctccctgtcctgggacttcaccctgtactcttcaactaatcaacaatctctatgctttggctcactccaaaactcttaaaaaccctagccccagagtccccgggaagatggattt--ggggttttctcttttctcctcatttgttggccttaccattaaacctctgtctctgttgcaacctggtgcctttgggtattgacttgctgtgaacatccgggcaatgaacctattacagctaca i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47870433 544 - 81552678 agcttgttgaaggaattgaagccatcctcacagaattaagaattctggacagaaacgtagttataattaagctttaatcaggctgcactttgacccacgtccttgtaactaaaaatcagatgacc-ttagatactgaccatttgcatccccattgttcctgtagatagaaattctagtgtcagaatcatgaggcttttgtttaagaattgcttaaatggatcccgaattactgtggaactgctaatgccaaccaatttaaagactcccatagacaaaccaaatga---------------gcacaagagtacagtttctttctctctctgtccggtgacttcaccgtgtactcttcaactaatcaacaatctctatgctttggctcactccaaaactctt-aaaaccctagccccagagtccttgagaagacggattt--gaggttttctcttttctcctcatttggtggccttaccattaaacctctgtctctgttgcaacctggcgcctctgggtattgacttgctgtgaacatccaggcaatgaacctattacagctaca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52982972 560 + 80904711 agtttgttgaaggaattgaagccatcctcacagaattaagaattctggacagaaatgtagttataattgagctgtaatcaggctgcactttgacccacttccttgtaactagaaatcacataacc-ttagacactgaccatttgcatccccatggttcctgtagatcgaaattctaatgttagaatcatgaggcttttgtttaagaattgcttaaacggatcctgaattactgtggaactgctaacgccaaccaatgtaaagactcccacagacaaaccaaatgagacaaaccaagaaatgtacgagagtacagtttctttctctctctgtcccgtgacttcatcctgtactcttcaattaatcaacaatctctttgctttggctcactccaaaactcttaaaaaccctagccccagagtccttggaaagacggattt--gagtttttctcttttctcctcgtttggcggccttaccattaaacctctgtctttgttgcaacctggtgcctctgggtactgacctgctgtgaacatccaggcaatgaacctattacagctaca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52505410 545 + 80997621 agtttgttgaaggaattgaagccatcctcacagaattaagaattctggacagaaatgtagttataattgagctgtaatcaggctgcactttgacccacttccttgtaactagaaatcatataacc-ttagacactgaccatttgcatccccattgttcctgtagatcgaaattctaatgttagaatcatgaggcttttgtttaagaattgcttaaacggatcctgaattactgtggaactgctaacgccaaccaatgtaaagactcccacagacaaaccaaatga---------------gcacgagagtacagtttctttctctctctgtcccgtgacttcatcctgtactcttcaattaatcaacaatctctttgctttggctcactccaaaactcttaaaaaccctagccccagagtccttggaaagacggattt--gagtttttctcttttctcctcgtttggcggccttaccattaaacctctgtctttgttgcaacctggtgcctctgggtactgacctgctgtgaacatccaggcaatgaacctattacagctaca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47550786 538 + 74645514 agtttgttgaaGGGATAGAAGCCATCCTCACAGAATTAAGAATTCTGGATAGAAATGGAGTTATAATGAAGCTGTAATCAGGCTGCACTTTGACCCACTTC-------CTAGAAATCACATAACC-TTAGATACTGACCATTTGCATCCCCATTGTTCCTGTAGATCGAAATTCTAATGTTAGAATCATGaggcttttgtttaagaattgcttaaacGGATCCTGAATTGCTGTGGAACTGCTAACGCCAACCAATGTAAAGACTCCCACAGACAAACCAAATGA---------------GCATGAGAGtacagtttctttctctctcagtccCGTGACTTCATCCTGTACTCTTCAATTAATCAACAATCTCTATGCTTTGGCTCACTCCAAAACTCTTAAAAACCCTAGCCCCAGAGTCCTCGGGAAGACGGAttt--gagtttttctcttttctcctcgtTTGGCGGCCTTACCATTAAACCTCTGTCTCTGTTGCAACCTGGTGCCTCTGGGTACTGACCTGCTGTGAACATCCAGGCAATGAACCTATTACAACTACA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9816855 541 - 75148670 agtttgttgaagggattgaagccatcctcacagaattaagaattctggacagaaatgtagttataattgagctgtaatcaggctgcactttgacccacttccttgtaactagaaatcacataacc-ttagacactgaccatttgcatccccattgttcctgtagatcgaaattctaatgttagaatcatgaggcttttgtttaagaattgcttaaacggatcctgaattactgtggaactgctaacgccaaccaatgtaaagactcccacagacaaaccaaatga---------------gcacgagagtacagtttctttctct----gtcccgtgacttcatcctgtactcttcaattaatcaacaatctccatgctttggctcactccaaaactcttaaaaaccctagccccagagtcctcgggaagacggattt--gaggttttctcttttctcctcctttggcggccttaccattaaacctctgtctctgttgcaacctggtgcctctgggtactgacctgctgtgaacattcaggcgatgaacctattacagctaca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112659730 545 + 159171411 tatttgttgaaggaattgaagccctcctcacagaattgagaattcgggacagaaatgtagttacaattaagctttaatcaggttgcactttg--cca-ttcctggtgactaaaaatcacataacctttagatactgaccatttgcatccccattgttcccgtggataggatttctaatgttagaatcatgaggcttttgtttaagaattgcttaggcagatcctggataacagtggaacttctaacgccaaccagtttaaagactcccacagacaaaccagatga---------------gtaagagagtatagtttcttcctctcccggtcctgggacttcaccctgtactcttcaacttatcagcaatctctgtgctttggctcactccaaaactcttaaaaaccctagccccagagtccccgggaagacggatttgagaggtttccccttttctccttgtttggccgacttaccactaaacctctgtcttggttgcaacctggtgcctctgggtattgacttgctgtgaacatccaggcaatgaacctattatagttaca i calJac3.chr5 C 0 C 0 e canFam3.chr9 39239245 229 - 61074082 I e mm10.chr11 99410167 70 + 122082543 I a score=169673.000000 s hg38.chr17_JH159146v1_alt 3009 60 + 278131 GAATGAATACACAAATAAATGCATATGTGATGCCCCACTTGTATACATAAATAAGCCAGC s panTro4.chr17 66119877 60 - 82630442 GAATGAATACACAAATAAATGCATATGTGATGCCCCACTTGTATACATAAATAAGCCAGC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47870977 60 - 81552678 GAATGAATACACAAATAAATGCATATGTGATGCCCCTCTCGTATACATAAATATGCCAGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52983532 60 + 80904711 GAATGAATACACAAATAGATGCATATGTGATGTCCCACTTGTATACACAAATATGCCAGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52505955 60 + 80997621 GAATGAATACACAAATAGATGCATATGTGATGTCCCACTTGTATCCACAAATATGCCAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47551324 60 + 74645514 GAATGAATACACAAATAGATGCATATGTGATGTCCCACTTGTATATACAAATATGCCAGc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9817396 60 - 75148670 GAATGAATACACAAATAGATGCATATGTGATGTCCCACTTGTATACACaaatatgccagc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112660275 60 + 159171411 GAATGAATACACAAATAAATGCATATGTGATGCCCCACTGGTATACCTCAATATGCCAAC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39239474 60 - 61074082 GAATGTATATACAAATAAATGAATATATGATGCCCTGCATGTATACATAAATATACCAAC i canFam3.chr9 I 229 I 13 e mm10.chr11 99410167 70 + 122082543 I a score=-8197.000000 s hg38.chr17_JH159146v1_alt 3069 3 + 278131 G---------------------------------------------------------Ga s panTro4.chr17 66119937 3 - 82630442 G---------------------------------------------------------Ga i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47871037 3 - 81552678 G---------------------------------------------------------Ga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52983592 60 + 80904711 GGAATACACAAATAGATGCATATGTGATGCCCCACTTATATACATAAATATGCCAGCTGa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52506015 3 + 80997621 G---------------------------------------------------------Ga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47551384 3 + 74645514 g---------------------------------------------------------ga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9817456 3 - 75148670 g---------------------------------------------------------ga i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112660335 3 + 159171411 C---------------------------------------------------------GA i calJac3.chr5 C 0 I 9 e canFam3.chr9 39239534 13 - 61074082 I e mm10.chr11 99410167 70 + 122082543 I a score=410211.000000 s hg38.chr17_JH159146v1_alt 3072 251 + 278131 gaaaaccaaacaccacatgttctcactcataaatggaagttgaacaatgagaacatgtggacacagggaggggagcatcacacaccggggcctgtcggggagtgagggactaggg----------------------------------------------------------------------------gagggataacattaaggagaaatacctaatgtagatgatg------ggttgatgggtgcagcaaaccaccatggcacgtgtatgcctatgttacaaatctgcacgttctgcacatgtatctcagaacttaaagtata---------------------------------------------------------------------------ataat s panTro4.chr17 66119940 247 - 82630442 gaaaaccaaacaccacatgttctcactcataaatggaagttgaacaatgagaacatatggacacagggaggggagcatcacacaccggggcctgttggggagtgagggactaggg----------------------------------------------------------------------------gagggataacattaaggagaaatacctaatgtagatgatg------ggttgatg----cagcaaaccaccatggcacgtgtatgcctatgttacaaatctgcacattctgcacatgtatctcagaacttaaagtata---------------------------------------------------------------------------ataat i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47871040 250 - 81552678 gaaaaccaaacaacatgtgttctccctcttaagtggaagttgaacaatgagaacacatggacacagggaggggtacatcacacactggggcctgtcggtgggtggggggttgggg----------------------------------------------------------------------------gagggatagcatt-aggagaaatacctaatgtagatgatg------ggttgatgggtgcagcaaaccaccatggcacgtgtatgcctatgttacaaatctgcacgttctgcacatgtatctcagaacttaaagtata---------------------------------------------------------------------------ataat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52983652 331 + 80904711 gaaaaccaaacaccacacgttctcactcataagtggaagttgaacaatgagaacacatggacacagggaggggagcatcacacactggggcctgtcatggggtggggggctgggg----------------------------------------------------------------------------gagggatagcatt-aggagaaatacctaatgtagatgatgggtgcaggttgatgggtgcagcaaaccaccatggcacgtgtatacctacgttacaaatctgcacgttctagacatgtagctcagaatgtaaagtataataataaaaaataaaGGTAAAAATGACAAAAGAAATATAATTGTGAGCACGGAAAAAACTCAATAGCAACTTATGATAAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52506018 256 + 80997621 gaaaaccaaataccacgcgttctcactcataagtggaagttgaacaatgagaacacatggacacagggaggggagcatcacacactggggcctgtcatggggtggggggctgggg----------------------------------------------------------------------------gagggatagcatt-aggagaaatacctaatgtagatgatgggtgcaggttgatggttgcagcaaaccaccatggcacgtgtatacctacgttacaaatctgcacgttctgcacatgtatctcagaatgtaaagtata---------------------------------------------------------------------------ataat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47551387 256 + 74645514 gaaaaccaaacaccacgcgttctctctcataagtggaagctgaacaatgagaacacatggacacagggaggggagcatcacacactggggcctgtcagggggtggggggctgggg----------------------------------------------------------------------------gagggatagcatt-aggagaaatacctaatgtagatgatgggtgcaggttgatgggtgcagcaaaccaccatggcacgtgtatacctacgttacaaatctgcacgttctgcacatgtatctcagaatgtaaagtata---------------------------------------------------------------------------ataat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9817459 332 - 75148670 gaaaaccaaacaccatgcgttctcactcataagtggaagttgaacaatgagaacacatggacacagggaggggagcatcacacactggggcctgtcatggggtggggggctcggggagggatagcattaggagaaatacctaatgtagatgatgggttgatgggtgtagcaaaccaccatggcatgtgtatgagggatagcatt-aggagaaatacctaatgtagatgatgggtgcaggttgatgggtgcagcaaaccaccatggcacatgtatacctacgttacaaatctgcacgttctgcacatgtatctcagaatgtaaagtata---------------------------------------------------------------------------ataat i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39239534 13 - 61074082 I e mm10.chr11 99410167 70 + 122082543 I e calJac3.chr5 112660338 9 + 159171411 I a score=3276.000000 s hg38.chr17_JH159146v1_alt 3323 1 + 278131 a s panTro4.chr17 66120187 1 - 82630442 a i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47871290 1 - 81552678 a i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52983983 1 + 80904711 A i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52506274 1 + 80997621 a i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47551643 1 + 74645514 a i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9817791 1 - 75148670 a i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112660347 1 + 159171411 A i calJac3.chr5 I 9 C 0 s canFam3.chr9 39239547 1 - 61074082 A i canFam3.chr9 I 13 C 0 e mm10.chr11 99410167 70 + 122082543 I a score=666649.000000 s hg38.chr17_JH159146v1_alt 3324 236 + 278131 aaaaa------taaaAATTACACTGCAACTTGTC--AAAAAAGTTATACTTGTTGCTCTGTTTA-TTTGAAACGTGAAATTGCAGCCTGACGTGATTTCTTT-----AAAATCCCATGTTA-CTTGCAAATAAATGAAATATTTCAAAATGAGTACA-----CTTAGCAGAAACTTAGTAGTGTATGTATAACTTCAGGAGATCAATAAGTGCAAGTCAGTAACTAAAATGACCATATTCTTACCAACCAAGGTCA s panTro4.chr17 66120188 236 - 82630442 aaaaa------taaaAATTACACTGCAACTTCTC--AAAAAAGTTATACTTGTTGCTCTGTTTA-TTTGAAACGTGAAATTGCAGCCTTACATGATTTCTTT-----AAAATCCCATGTTA-CTTGCAAATAAATGAAATATTTCAAAATGAGTACA-----CTTAGCAGAAACTTAGTAGTGTATGTATAACTTCAGGAGATCAATAAGTTCAAGTCAGTAACTAAAATGACCATATTCTTACCAACCAAGGTCA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47871291 237 - 81552678 aaaaa------taaaAATTACACTTCAACTTGTC--AAAAAAGTTATACTTGTTGCTCTGTTTATTTTGAAACGTGAAATTGCAGCCTTATGTGATTTCTTT-----AAAATCCCATGTTA-CTTGCAAATAAATGAAATATTTCAAAATGAGTACA-----CTTAGCAGAGACTTAGTAGTGTATATATAACCTCAGGAGATCAATAAGTGCAAGTCAGTAACTAAAATGACCATATTCTGACCCACCAAGGTCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52983984 241 + 80904711 AAAAATAAAGGTAAAAATGACACTTCAACTTGTC--AAAAAAATTATACTTGTTGCTCTGTTTA-TTTGAAATGTGAAATTGCAGCCTTACGCGATTTCTTT-----AAAATCCCATGTTA-CTTACAAATAAATGAAATATTTCAAAATGAGTA-A-----CTTAGCAGAAACTTAGTAGTGTATATATAACTTCAGGAGATCGAAAAGTGCAAGTCAGTAACTAAAATGACCATCTTCTGACCAACCAAGGTCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52506275 241 + 80997621 aaaaataaaGGTAAAAATGACACTTCAACTTGTC--AAAAAAATTATACTTGTTGCTCTGTTTA-TTTGAAATGTGAAATTGCAGCCTTACGCGATTTCTTT-----AAAATCCCATGTTA-CTTACAAATAAATGAAATATTTCAAAATGAGTA-A-----CTTAGCAGAAACTTAGTAGTGTATATATAACTTCAGGAGATCGAAAAGTGCAAGTCAGTAACTAAAATGACCATCTTCTGACCAACCAAGGTCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47551644 241 + 74645514 aaaaataaaggtaaaaatgaCACTTCAACTTGTC--aaaaaaaTTATACTTGTTGCTCTGTTTA-TTTGAAATGTGAAATTGCAGCCTTACGCGATTTCTTT-----AAAATCCCATGTTa-cttacaaataaatgaaatatttcaaaatgagtA-A-----CTTAGCAGAAACTTAGTAGTGTATATATAACTTCAGGAGATCGAAAAGTGCAAGTCAGTAACTAAAATGACCATCTTCTGACCAACCAAGGTCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9817792 241 - 75148670 aaaaataaaGGTAAAAATGACACTTCAACTTGTC--AAAAAAATTATACTTGTTGCTCTGTTTA-TTTGAAATGTGAAATTGCAGCCTTACGCGATTTCTTT-----AAAATCCCATGTTA-CTTACAAATAAATGAAATATTTCAAAATGAGTA-A-----CTTAGCAGAAACTTAGTAGTGTATATATAACTTCATGAGATCGAAAACTGCAAGTCAGTAACTAAAATGACCATCTTCTGACCAACCAAGGTCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112660348 229 + 159171411 AAAAA------TAAAAATTACACTTCAGCATGTC--AAAAAATGTATACTTGTGA--------A-ATTGAAATGTGAAATTGCAGCCCGACGTGATTTCTTT-----AAAATCCCATGTTGTTTTGCAAATGAATGAAATATTTCAAAATGAGTACA-----CTTAGCAGAAACTTGGTAGTGTATATATAACTTCAGGAGATCAGTAAGTGCAAGTCAGTAACTAAAATGACCGTATTCTGACCAACCAAGGTCA i calJac3.chr5 C 0 C 0 s mm10.chr11 99410237 215 + 122082543 AAAAA------TAAAGTTTACATTTGAAC-TGGC--TTAAACGTTACATTTGTAGTTCTGTTCA-CTTGAAAAGTGAAACTGTACCCTTAAGTGAATTC-TC-----AAAATCCCATAGTA-GTTCCCAGCAAATGAAATATTTCAAAACAGATACACTTTTCTTGGTGGAAACT---TCATGTACGCGCAACTATAGGAG--------GTGGGTCCCAACGGACAGACTGCCCAGCCT-------------GTCA i mm10.chr11 I 70 C 0 s canFam3.chr9 39239548 241 - 61074082 AAAAT------TAAAAATTACACTTCAACTTGTTAAAAAAAAGTTGTATTTGCAGCTCTGTTCA-TTTGAAATATGAAATTGCAGCCTTA-ATCATTTTTTTAAAAAAAAATCCCATGGTA-TTTACAAATAAATGAAATATCCCAAAAAGGATACACTTATCTTAGCAGAAATT---TCATGTGTTTATAACTTTAGGAGATGCGT---TCCAAGCTGACAACTAAAATGCACATATTTTGACCAGCCAAGTTCA i canFam3.chr9 C 0 I 316 a score=753839.000000 s hg38.chr17_JH159146v1_alt 3560 297 + 278131 TAGCGTCGTGTGTTTACGGTGTTT-------TTAAAGATTTCAAAATGCCGGGCTAATGTGATTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCTAAATGGCTTCT----ATTAGAGCCCACTGCTGTCTGTGGACTGTTTTATCAGTGTGATTTATTTACAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGCATTTCATTAAGAATATGTACA s panTro4.chr17 66120424 297 - 82630442 TAGCGTCGTGTGTTTACGGTGTTT-------TTAAAGATTTCAAAATGCCGGGCTAATGTGATTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCACCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCTAAATGGCTTCT----ATTAGAACCCACTGCTGTCTGTGGACTGTTTTATCAGTGTGATTTATTTAGAAGTCTGCTTCTAAATTGTGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGCATTTCATTAAGAATATGTACA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47871528 297 - 81552678 TAGCGTCCTGTGTTTATGGTGTTT-------TTAAAGATTTCAAAATGCCAGGCTAATGTGACTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGCAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCTAAATGGCTTCT----ATTAGAGCCCACTGCTGCCTGTGGACTGTTTTATCAGTGTGGCTTATTTAGAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAT-AAG--AGTTGCATTTCATTAAGAATATGTACA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52984225 296 + 80904711 TAGCGCCCTGTGTTTACGGTG-TT-------TTAAAGATTTCAAAATGCCAGGCTAATGTGGTTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCGAAATGGCTTCT----GTTAGAGCCCACTGCTGTCTGTGGGCTGTTTTATCAGTGTGGTTTATTTAGAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGTATTTCATTAAGAATATGTACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52506516 296 + 80997621 TAGCGCCCTGTGTTTACGGTG-TT-------TTAAAGATTTCAAAATGCCAGGCTAATGTGGTTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCGAAATGGCTTCT----GTTAGAGCCCACTGCTGTCTGTGGGCTGTTTTATCAGTGTGGTTTATTTAGAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGTATTTCATTAAGAATATGTACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47551885 296 + 74645514 TAGCGCCCTGTGTTTACGGTG-TT-------TTAAAGATTTCAAAATGCCAGGCTAATGTGGTTATGTGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCGAAATGGCTTCT----GTTAGAGCCCGCTGCTGTCTGTGGGCTGTTTTATCAGTGTGGTTTATTTAGAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGTATTTCATTAAGAATATGTACA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9818033 297 - 75148670 TAGCGCCCTGTGTTTACGGTGTTT-------TTAAAGATTTCAAAATGCTAGGCTAATGTGGTTATATGTGATATTATTGTTGTCTTTTTGTACAAAGTGAGTCATCTCAAGTTGAGTAACTTGTTCTGAGTAAGATAATGACTCACT-GAGAAAGCCTGAAATACCATCGAAATGGCTTCT----GTCAGAGCCCGCTGCTGTCTGTGGGCTGTTTTATCAGTGTGGTTTATTTAGAGGTCTGCTTCTAAATTGCGTATTTGTT-CCATCATTTTGAAG-AAG--AGTTGTGTTTCATTAAGAATATGTACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112660577 294 + 159171411 TAGCGACCTGTGTTTACGGTGTTTGGTGTTGTTAAGGATTTCAAAATGCCAGGCTAAAGTGATGATA-----------TGTTGTCTTTTTGTACAAGGTGAGTCATCTCAAGTTAAGTAACTTGTTCTGAGTAAGATGATGACTCACT-GAGAAAGCCTGAAATACCATCTAAATAGCTTTG----ATTAGATCCCACTGCTATCTGGGGACTGTTTTGTCAGGGTGGTTTATTCAGAGGTCGGCTTCTAAATTGCGTATTTTTT-CCAAGATTTTGAAGAAAA--AGTTGCATTTCGTTAAGAATATATACA i calJac3.chr5 C 0 C 0 s mm10.chr11 99410452 268 + 122082543 TAGTGTCCTGTGCTTATGGCGCTT-------CCCATAGTTTCAAAATGCTGAACTCCTGTGGATATGCATCATGCCATGACTGTCCTTTTGTAAAAGGTGAGCCATCTCGAGTTA-------TATGCTCAGGAAAACAATTCCTCCCTCAACAGAGCCTGAAGCACCATCT------CCTTTCAGAGTTAGACCCCGCTGTCCTTTGTGAATTGTTCCATTAAA------------------------CAAGTCATGTACTTGTTCCCATGATTTTGAGG-AAGAAAGTAGCATCTCTTTAAAAGTGGATGCA i mm10.chr11 C 0 I 387 e canFam3.chr9 39239789 316 - 61074082 I a score=21336.000000 s hg38.chr17_JH159146v1_alt 3857 9 + 278131 TAGTGAAAA s panTro4.chr17 66120721 9 - 82630442 TAGTGAAAC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47871825 9 - 81552678 TAGTGAAAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52984521 9 + 80904711 TAGTGAAAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52506812 9 + 80997621 TAGTGAAAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47552181 9 + 74645514 TAGTGAAAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9818330 9 - 75148670 TAGTGAAAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112660871 9 + 159171411 TAGCGAAAC i calJac3.chr5 C 0 C 0 e canFam3.chr9 39239789 316 - 61074082 I e mm10.chr11 99410720 387 + 122082543 I a score=478831.000000 s hg38.chr17_JH159146v1_alt 3866 189 + 278131 AACAATGACATATTTTAGCAACTAGAATTCGCAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTTTCCTGAAAAAGCTTGATGCTCATGTTTTTACAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTGCAAACAATTTATTGCATGTGTGTAAAGCATTGCATTTATTTATAATTCT s panTro4.chr17 66120730 189 - 82630442 AACAATGACATCTTTTAGCAACTAGAATTCGCAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTTTCCTGAAAAAGCTTGATGCTCATGTTTTTACAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTGCAAACAATTTATTGCATGTGTGTAAATCATTGCATTTATTTATAATTCT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47871834 188 - 81552678 AACAATGACATCTTTTGGCAACTAGAATTCACAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTCTCCTG-AAAAGCTTGATGCTCATGTTTTTACAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTGCAAACAATTTATTGCATGTGTGTAAAGCATTGCATTTATTTATAATTCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52984530 183 + 80904711 AACAATGACATCTTTT-GCAACTAGAATTCACAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTTTCCTG-AAAATCTTGATGCTCATGTTTTTATAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTG----CAATTTATTGCATGTGTGTAAAGCGTTGCATTTATTTATAATTCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52506821 183 + 80997621 AACAATGACATCTTTT-GCAACTAGAATTCACAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTTTCCTG-AAAATCTTGATGCTCATGTTTTTATAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTG----CAATTTATTGCATGTGTGTAAAGCGTTGCATTTATTTATAATTCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47552190 184 + 74645514 AACAATGACATCTTTTAGCAACTAGAATTCACAATGAATTTAATTCTAAAGAAGAGTAGTATGcagaa-tttttttcctg-aaaatcttGATGCTCATGTTTTTATAGTCTATGAAGTT--AAAATATCTATTCTGAGTTTTG----CAATTTATTGCATGTGTGTAAAgcgttgtatttatttataattct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9818339 188 - 75148670 AACAATGACATCTTTTAGCAACTAGAATTCACAATGAATTTAATTCTAAAGAAGAGTAGTATGCAGAA-TTTTTTTCCTG-AAAATCTTGACGCTCATGTTTTTATAGTCTATAAAGTT--AAAATATCTATTCTGAGTTTTGCAAACAATTTATTGCATGTGTGTAAAGCGTTGCATTTATTTATAATTCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112660880 189 + 159171411 AACAATGACATCTTTTAGCAACTAAAATTTGCAATGAATTGAATTCTAAAGAAGAGTGCTATGCAGAACTTTTTTTCCTG-GAAAGCTTGCTGCTCTTGTTTTTACAGTCTATGAAGTT--AAAATATCTATTCTGAGTTTTGCAAACAATTTATTGCATGTGTGTAAAGCATTGCATTTATTTATAATTCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99411107 178 + 122082543 AACAGTGACATCTTTTAGCAACTACAATCCGCAATGACTTT-----TAAGGACGG-------CCTGAG-TATTGTTTCTG-AGTTGCCTGATGCCCGTGCTTCTGCTTCCGATGGAGCTTGAACATATCTATTCTGAATTTTGCCGACACACCATGGCCTGCTGGTAAAGCTGTGGGCTTATTCCTGACACT i mm10.chr11 I 387 I 55 e canFam3.chr9 39239789 316 - 61074082 I a score=159232.000000 s hg38.chr17_JH159146v1_alt 4055 66 + 278131 GCTATATTATGCTAATTTAAGAAATAAACCCTAAAATCATGCATGACAATTCCCAAGAATGCTAAG s panTro4.chr17 66120919 66 - 82630442 GCTATATTATGCTAATTTAAGAAATAAACCCTAAAATCATGCATGACAATTCCCAAGAATGCTAAG i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47872022 66 - 81552678 GCTATATTATGCTAATTTAAGAAATAAACCCTAAAATCGTGCATGACAATTCCCAAGAATGCTAAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52984713 66 + 80904711 GCTATATTATGCTAATTTAAGAAATAAACCCTAAAACTGTGCATGACAATTCCCAAGAATGCTAAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52507004 66 + 80997621 GCTATATTATGCTAATTTAAGAAATAAACCCTAAAACTGTGCATGACAATTCCCAAGAATGCTAAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47552374 66 + 74645514 gcTATATTATgctaatttaagaaataaaccCTAAAACTGTGCATGACAATTCCCAAGAATGCTAag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9818527 66 - 75148670 GCTATGTTATGCTAATTTAAGAAATAAACCCTAAAACTGTGCATGACAATTCCCAAGAATGCTAAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112661069 66 + 159171411 TATATATTATGCTAATTTAAGAAATAAATCCTAAAATTGTGAATGACAATTCCCAAGAGTGGTAAG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39239789 316 - 61074082 I e mm10.chr11 99411285 55 + 122082543 I a score=91167.000000 s hg38.chr17_JH159146v1_alt 4121 50 + 278131 Ctttttt-tgagacggagtctcactctgtcgcccaggctggaatgcagtgg s panTro4.chr17 66120985 50 - 82630442 Ctttttt-tgagacggagtctcactctgtcgcccaggctggaatgcagtgg i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47872088 51 - 81552678 Cttttttctgagacagagtctcactctgtcgcccaggctggaatgcagtgg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52984779 50 + 80904711 CTTGttt-tgagacggagtctcactctgtcgcccaggctggagtgcagtgg i rheMac3.chr16 C 0 M 222 s macFas5.chr16 52507070 50 + 80997621 CTTGttt-tgagacggagtctcactctgtcacccaggctggagtgcagtgg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47552440 50 + 74645514 cttgttt-tgagatggagtctcactctgccgcccaggctggagtgcagtgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9818593 50 - 75148670 CTTGttt-tgagacggagtctcactctgtcgcccaggctggagtgcagtgg i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39239789 316 - 61074082 I e mm10.chr11 99411285 55 + 122082543 I e calJac3.chr5 112661135 0 + 159171411 C a score=113026.000000 s hg38.chr17_JH159146v1_alt 4171 88 + 278131 tgcgatctcagctcactgcaagctctgcctcccgggttcacaccattctcccgcctcagcctcccaagtagctgggactacaggtgcc s panTro4.chr17 66121035 88 - 82630442 tgtgatctcagctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcc i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47872139 88 - 81552678 tgcgatctcagctcactgcaagctccgcctcccaggttcatgccattctcctgcttcagcctcccgagtagctaggactacaggtgcc i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52507120 88 + 80997621 cacaatctcagctcactgcaagctccgcctcctgggttcaggccattctcctgcctcagcctcccgagtagctgggactacaggtgtc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47552490 88 + 74645514 cacaatctcagctcactgcaagctccgcctcctgggttcaggccattctcctgcctcagcctcccgagtagctgggactacaggtgtc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9818643 88 - 75148670 cacaatctcagctcactgcaagctccgcctcctgggttcaggccattctcctgcctcagcctcctgagtagctgggactacaggtgcc i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39239789 316 - 61074082 I e mm10.chr11 99411285 55 + 122082543 I e calJac3.chr5 112661135 0 + 159171411 C e rheMac3.chr16 52984829 222 + 80904711 M a score=232214.000000 s hg38.chr17_JH159146v1_alt 4259 153 + 278131 cgccaccacgcccggataattttctgtatttttagtagagacagggtttctctgtgttagccaggatggtctcaatctcctgacctcatgatctgcccgcttcggcctcccaaagttctgggattataggcgtgagccactgctcccagccCC s panTro4.chr17 66121123 153 - 82630442 cgccaccacgcccagataattttctgtatttttagtagagacagggtttctccgtgttagccaggatggtctcgatctcctgacctcatgatctgcccgcttcggcctcccaaagttctgggattataggcgtgagccactgtgcccagccCC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47872227 152 - 81552678 tgccaccatgcccagataacttt-tctatttttaatagagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgttatctgcccgctttggcctcccaaagtgctgggattataggtgtgagccactgcgcccggccCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52985055 145 + 80904711 cgccaccac-gcctggctactttttgtatttttagtagagatggggtttcaccatcttggccaggctggccttgaactcctgacctcgtgattcacccacctcagcctcccaaagtgctgggattacaggagtgagccaccgctcc------- i rheMac3.chr16 M 222 C 0 s macFas5.chr16 52507208 151 + 80997621 tgccactacggccagataattttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcgatcttctgacctcgtgatctgcccgcttcggcctcc--aagtgctgggattacaggcgtgagccaccgtgcccagtcCC i macFas5.chr16 C 0 I 296 s papAnu2.chr16 47552578 151 + 74645514 tgccactacgcccagataattttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctcaatcttctgatctcgtgatctgcccgcttcagcctcc--aagtgctgggattacaggcgtgagccaccgtgcccagtccc i papAnu2.chr16 C 0 I 296 s chlSab2.chr16 9818731 151 - 75148670 tgccagtacgcccagataattttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtcttgatcttctgacctcgtgatctgcccgcttcagcctcc--aagtgctgggattacaggcgtgagccaccgtgcccagtcCC i chlSab2.chr16 C 0 I 300 e canFam3.chr9 39239789 316 - 61074082 I e mm10.chr11 99411285 55 + 122082543 I e calJac3.chr5 112661135 0 + 159171411 C a score=501.000000 s hg38.chr17_JH159146v1_alt 4412 1 + 278131 A s panTro4.chr17 66121276 1 - 82630442 A i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47872379 1 - 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52985200 1 + 80904711 G i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52507655 1 + 80997621 G i macFas5.chr16 I 296 C 0 s papAnu2.chr16 47553025 1 + 74645514 g i papAnu2.chr16 I 296 C 0 s chlSab2.chr16 9819182 1 - 75148670 G i chlSab2.chr16 I 300 C 0 e canFam3.chr9 39239789 316 - 61074082 I e mm10.chr11 99411285 55 + 122082543 I e calJac3.chr5 112661135 0 + 159171411 C a score=2800.000000 s hg38.chr17_JH159146v1_alt 4413 1 + 278131 G s panTro4.chr17 66121277 1 - 82630442 G i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47872380 1 - 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52985201 1 + 80904711 G i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52507656 1 + 80997621 G i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47553026 1 + 74645514 g i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9819183 1 - 75148670 G i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112661135 1 + 159171411 G i calJac3.chr5 C 0 C 0 e canFam3.chr9 39239789 316 - 61074082 I e mm10.chr11 99411285 55 + 122082543 I a score=81111.000000 s hg38.chr17_JH159146v1_alt 4414 34 + 278131 TTTTTCTTAATTTATTTTATA---TACTCTGTATTTA s panTro4.chr17 66121278 34 - 82630442 TTTTTCTTAATTTATTTTATA---TACTCTGTATTTA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47872381 34 - 81552678 TTTTTCTTAATTTATTTTATA---TACTCTGTATTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52985202 34 + 80904711 TTTTTCTTAATTTATTTTATA---TACTCCGTATTTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52507657 34 + 80997621 TTTTTCTTAATTTATTTTATA---TACTCCGTATTTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47553027 34 + 74645514 tttttcttaatttattttata---tacccCGTATTTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9819184 34 - 75148670 TTTTTCATAATTTATTTTATA---TACTCCGTATTTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112661136 34 + 159171411 ttttttaaaatttattttata---tattCCGTATATA i calJac3.chr5 C 0 C 0 s mm10.chr11 99411340 37 + 122082543 TTCCCCTCAGCCAGTTTTATAGGTCACAGGGTGTTTA i mm10.chr11 I 55 C 0 e canFam3.chr9 39239789 316 - 61074082 I a score=131482.000000 s hg38.chr17_JH159146v1_alt 4448 39 + 278131 GTTGTAGAATCCTCCCCTTCAATTTGAGCAGCTACATTA s panTro4.chr17 66121312 39 - 82630442 GTTGTAGAATCCTCCCCTTCAATTTGAGCAGCTACATTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24647020 39 - 73212453 GTTGTAGAATCCTCCCGTTCAACATGAGCAGGTACATTA i ponAbe2.chr17 N 0 C 0 s nomLeu3.chr19 47872415 39 - 81552678 GTTGTAGAATCCTCCCCTTCAATTTGAGCAGCTACATTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52985236 39 + 80904711 GTTGTAGAATCCTCCGTTTCAATTTGAGCAGCTACATTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52507691 39 + 80997621 GTTGTAGAATCCTCCGTTTCAATTTGAGCAGCTACATTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47553061 39 + 74645514 GTTGTAGAATCCTCCCTTTCAATTTGAGCAGCTACATTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9819218 39 - 75148670 GTTGTAGAATCCTCCCTTTCAATTTGAGCAGCTACATTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112661170 39 + 159171411 GTTGTAGAATCCTCCCCTTCACTTTGAACAGCTACATTA i calJac3.chr5 C 0 C 0 s mm10.chr11 99411377 39 + 122082543 CGTGTGGGGTTCTCTCCCTTAGTGTGAGCAGCTGCCTCA i mm10.chr11 C 0 C 0 e canFam3.chr9 39239789 316 - 61074082 I a score=305201.000000 s hg38.chr17_JH159146v1_alt 4487 111 + 278131 ATATTA-GCATTTTAGACAGGCACCGTGGTTTGCACCTTTCATCAGGCATCTGACATTTG-ACTAAAATGGca-gtagtct--gaggtgggaggatcacttgagcccaggaatttg s panTro4.chr17 66121351 111 - 82630442 ATATTA-GCATTTTAGACAGGCACCGTGGTTTGCACCTCTCATCAGGCATCTGACATTTG-ACTAAAATGGca-ggagtct--gaggtgggaggatcacttgagcccaggaatttg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24647059 116 - 73212453 ATGTAATGCATTTTTGACAGGCGCCGTGGTTTGCACCCGTCATCAGGCATGTGACATTTGTAATAAAATGGCAGGGAGTTTTGAaggtgggaggatcacttgagcccagtaatttg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47872454 111 - 81552678 ATATTA-GCATTTTAGAcaggcaccgtggtttgcacctgtcatcagccatctgacatttg-actaaaatggca-ggagcct--gaggtgggaggatcacttgagcccaggaatttg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52985275 111 + 80904711 ATATTA-GCATTTTAGACAGGCCCTGTGGTTTGCACCTCTCATCAGGCATCTCACGTTTG-ACTAAAATGGTA-ggagtct--gaggtgggaggatctcttgagcccagaagtttg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52507730 111 + 80997621 ATATTA-GCATTTTAGACAGGCCCTGTGGTTTGCACCTCTCATCAGGCATCTCACGTTTG-ACTAAAATGGTA-ggagtct--gaggtgggaggatctcttgagcccagaagtttg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47553100 111 + 74645514 ATATTA-GCATTTTAGACAGGCCCTGTGGTTTGCACCTCTCATCAGGCATCTCACATTTG-ACTAAAATggca-ggagtct--gaggtgggaggatctcttgagcccagaagtttg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9819257 111 - 75148670 ATATTA-GCATTTTAGACAGGCCCTGTGGTTTGCACCTCTCATCAGGCATCTCACATTTG-ACTAAAATGGTA-ggagtct--gaggtgagaggatctcttgagcccagaagtttg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112661209 111 + 159171411 ATATTA-GCAGTTGACACAGGCACCATGGTTTGCACCCGGCATCAGGTATCTGACATTTG-ACTAAAAGGGca-ggagtct--gaggtgggagaatcccttgaacccaggagtttg i calJac3.chr5 C 0 C 0 e canFam3.chr9 39239789 316 - 61074082 I e mm10.chr11 99411416 0 + 122082543 C a score=1398254.000000 s hg38.chr17_JH159146v1_alt 4598 526 + 278131 aggctgcagtgagctatgagcacaccattgcactacagcctgggtgacagagagcgaccccatctctgaagaaaGCacatcttatagtttcaaagtgctttatggcttgttaagctccttcacaga--agttggcttatttgatgctcac---aac-ttgtgatagagggaagataa-atattattcccccctcccc-----------------atatgttgggtg----agaaaagtgCAC-TTTTTTTTTTTACAAAAGT-------GGAATAATTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAATAAATAT--GTCTGGG--GGAA--ATATGTAAACCAGTTC-ATTTCTTTAGTTGTAGAGA----GACTTT--------TTTTCTTTGCATaataatagcaggtaata-tttagtgcttactatatgccaagtgtgaa-ttgaccc-atag--aattctcataa-tagggcgtg-aagc-aggtatcc--ttttttgcc-----------ttgatttt-agggaacagag-aac-------------------------------------------------------------------tatgg-aacagag-aggtaagtaaaaccattagaaa-gtgccagagctgggacccaaactcaggcc s panTro4.chr17 66121462 532 - 82630442 aggctgcagtgagctatgagcacaccattgcactacagcctgggtgacagagagcgaccccgtctctgaagaaaGCacatcttatagtttcgaagtgctttatggcttgttaagctccttcacaga--agttggcttatttgatgctcac---aac-ttgtgatagagggaagataa-atattattccccccTCCCC-----------------ATACGTTGGGTG----AGAAAAGTGCACATTTTTTTTTTTACAAAAGT-------GGAATAATTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAATAAATAT--GTCTGGG--GGAA--ATATGTAAACCAGTTC-ATTTCTTTAGTTGTAGAGA----GACTTT-G-TTT-TTTTTCTTTGCATaataatagcaggtaata-tttagtgcttactatatgccaagtgtgaa-tcgaccc-atag--aattctcataa-tagggcgtg-aagc-aggtatcc--ttttttgcc-----------ttgatttt-agggagcagag-aac-------------------------------------------------------------------tatgg-aacagag-aggtaagtaaaaccattagaaa-gtgccagagctgggacccaaactcaggcc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24647175 564 - 73212453 agggtgcagtgagctatgagcacaccactgcactagagcctgggtgacagagagcgaccctgtctctgaagaaaGCATATCTTATAGTTTTGAAGTGCTTTATGGCTTGTTAAGCTCCTTCACAGAACAATTGGCTTGTTTGATGCTCAC---AGCTTTGTGATAGAGGGAAGATAATATATTATTCCCCCCTCCCC-----------------ATATGTTGGGTG----AGAAAAGTGCAC-ATTTTCTTTACAAAACAGTGNTGGAAGAGATAATTTAGGAATTATGTATGAAGGGAAGAAAAAGGAATAAATATGGGTCTGGGGCGAAA--ATATGTAAACCAGTTCAATTTCTTTAGTTGTAGAGA----GACTTTTG-TTT-TTTTTCTTTGCATAGTaatagcagttaatattttagtgcttactatatgccatgtgtgaatttgacccaatagtcaattctcataattagggcatgtaagcaaggtatcct-ttttttgcc-----------ttgattttgagggagcagagaaac-------------------------------------------------------------------tatggaaacagagaaggtaagtaaaaccattagaaangtgccagagctgggacccaaactcaggcc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47872565 529 - 81552678 aggctgcagtgggctatgagcacaccactgcactacagcctgggtgacagagagcaaccccgtctctgaagaaaGCATATcttatagtttcaaagtgctttatggcttgttaagctccttcacaga--aattggcttatttgatgctcac---aac-ttgtgatagagggaagataa-atattattcccccctcccc-----------------atatgtcgggtg----agaaaagtgTAC-ATTTTCTTT--ACAAAACT-------GGAATAATTTAGG-ATTGTGCATGAAGGAAAGAAAAA-GAATAAATAT--GTCTGGG--GGAA--ATATGTAAACCAGTTC-ATTTCTTTAGTTGTGGAGA----GACTTT-G-TTT--TTTTCTTTGCATaataatagcaggtaata-tttagtgcttactatatgccaagtgtgaa-ttgaccc-atag--aattctcataattagggcgtg-aagc-aggtatcc--ttttttgcc-----------ttgatttt-agggagcagag-aac-------------------------------------------------------------------tatgg-aacagag-aggtaagtaaaaccattagaaa-gtgccagagctgggacccaaactcaggcc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52985386 526 + 80904711 aggctgcagtgagctatgatcgcatgactgcactactgcctgggtgacggagagtgactccgcctctaaagaaaGCTTGTcttatagttccgaagtgctttatggcttgttaagctccttcacaga--aattggcttatttgatgctcac---aac-ttgtgatagagggaagataa-atattattccccccTCCCC------------------TATGTTGGCTG----AGAAAAGTGCAC-ATTTTCTTT--ACAAAACT-------GGAATAGTTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAACAAATAC--GTCTGGG--GGAA--ATATCTAAACCAGTTA-ATTTCTTTAGTTGT--AGA----GACTTT-G-TTTTTTTTTCTTTGCATaataatagcaggtaata-tttagtgcttactatacgccaagtgcgaa-ttgagcc-acag--aattctcataattagggtgtg-aagt-gggtat----ttttttgcc-----------ttgatttt-agggagcagag-aac-------------------------------------------------------------------taaag-aacagag-gggtaaataaaaccattagaaa-gtgccagagctgggacccaaactcagacc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52507841 527 + 80997621 aggctgcagtgagctatgatcgcatgactgcactactgcctgggtgacggagagtgactccgcctctaaagaaaGCTTGTcttatagttccgaagtgctttatggcttgttaagctccttcacaga--aattggcttatttgatgctcac---aac-ttgtgatagagggaagataa-atattattccccccTCCCC------------------TATGTTGGCTG----AGAAAAGTGCAC-ATTTTCTTT--ACAAAACT-------GGAATAGTTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAACAAATAC--GTCTGGG--GGAA--ATATCTAAACCAGTTA-ATTTCTTTAGTTGT--AGA----GACTTT-GTTTTTTTTTTCTTTGCATaataatagcaggtaata-tttagtgcttactatacgccaagtgcgaa-ttgagcc-acag--aattctcataattagggtgtg-aagt-gggtat----ttttttgcc-----------ttgatttt-agggagcagag-aac-------------------------------------------------------------------taaag-aacagag-gggtaaataaaaccattagaaa-gtgccagagctgggacccaaactcagacc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47553211 527 + 74645514 aggctgcagtgagctatgatcgcatgactgcactacagcctgggtgacagagagtgacTCCGTCTCTAAAGAAAGCTTGTCTTATAGTTCCGAAGTGCTTTATGGCTTGTTAAGCTCCTTCACAGA--AATTGGCTTATTTGATGCTCAC---AAC-TTGTGATAGagggaagataa-atatttttcccTCCTCCCC-----------------ATATGTTGGCTG----AGAAAAGTgcac-attttcttt--acaaaacT-------GGAATAGTTTAGG-ATTGTGcatgaagggaagaaaaa-gaataaatac--gtCTGGG--GGAA--ATATCTAAACCAGTTA-ATTTCTTTAGTTGT--aga----gacttt-g-tttttttttctttgcataataATAGCAGGTAATA-TTTAGTGCTTACTATACGCCAAGTGCGAA-TTGAGCC-ACAG--AATTCTCATAATTAGGGTGTG-AAGT-GGGTAt----ttttttGCC-----------TTGATTTT-AGGGAGCAGAG-AAC-------------------------------------------------------------------TAAAG-AACAGAG-GGGTAAATAAAACCATTAGAAA-GTGCCAGAGCTGGGACCTAAACTCAGACC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9819368 516 - 75148670 aggctgcagtgagctatgat--catgactgcactacagcctgggtgacagagagtgactccgtctctaaagaaaGCTTGTcttatagttccgaagtgctttatggctt-ttaagctccttcacaga--aattggcttatttgatgctcac---aac-ttgtgatacagggaagataa-atattattccccccTCCCA------------------TATGTTGGCTG----AGAAA--------ATTTTCTTT--ACAAAACT-------GGAATAGTTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAATAAATAC--GTCTGGG--GGAA--ATATCTAAACCAGTTA-ATTTCTTTAGTTGT--AGA----GACTTT-G-TTTTTTTTCCTTTGCATAATAATAGCAGGTAATA-TTTAGTGCTGACTATACGCCAAGTGCGAA-TTGAGCC-ACAG--agttctcataattagggtgtg-aagt-gggtat----ttttttgcc-----------ttgatctt-agggagcagag-aac-------------------------------------------------------------------taaag-aacagag-gggtaaataaaaccattagaaa-gtgccagagctgggacccaaactcagacc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112661320 487 + 159171411 aggctgcagtgagctattatcacgccactgcactccagcctgggtgacagagagcggccctgtctctaaa-aaaGCAAATcttacagctccaaagtgctttatgacttgttaagctccttcacaga-------gcttatttgatgctcac---aac-ctgtgttagagggaagataa-atatgattcccccctcccc-----------------atatgttgggtg----agaaaagtgCAC-ATTTTCTTT--TCAAAACT-------GGAATAGTTTAGG-ATTGTGCATGAAGGGAAGAAAAA-GAATAAAAGT--GTCTGGG--GGAATTGTCTGTAAACCAGTTA-ATTTCTTTAGTTGTAGAGA----GACTTT-T-----TTTTTCTTTGCATAATAATAGCAGGTAATa-tttagtgcttactatatgccaagtgtgaa---------gtag--a---------------------tatt-----------tattttgcc-----------ttgatttt-agggagcagag-aac-------------------------------------------------------------------taaag-aacagag-gggcaaataaaaccattagaaa-gtg-cagagctggaacccaaactcaggcC i calJac3.chr5 C 0 I 549 s mm10.chr11 99411416 542 + 122082543 AGGCTG----------------------------------------------------------------------TCATCTTACAGTTCTCAAGGGGTTTACTGCTCACAAAGCTCTTGCGTGGA--AATGGACTTATCCGATGCTGACAGTAAC-CTGTGGTACA-GGAAGACGA-ATACGATCAACCCCCTGACTGTGCAGCAGGTCTGGAATATTTCAGATGCACAAGAATATTGCAT-ATTTCTTTT--TCAACATC-------CAAA-GGTTTAGG-----------AGGAGAAGGAAAA-GACCATGTAT--GGA-GGA--GGTG--ATATGCAAATTAGCTC-GTGT-TCTAGTCTC--AGAACTGAACCGT-G-TTCTTTATTTTCTG---ATGGACCGTGGCTAACA-TTGAGT------TA-GTGCCATAAATGAA-TTAACTC-CCTC--AATTATTATAATAATTGTGGG-AGGT-AGGCACTTTAtttttttctggtagtggggattgaactc-agggcctagtg-aacacgacacaagagctcggctgctgtgccacgcccccgactcAGTAGGCATCAGTCTGTCCCATGATCTTATAG-ATGAGAC-TGAGAAATAAAACCACCAGCAA-GCGATAGACCCAAAACC-AAACTCAGACC i mm10.chr11 C 0 C 0 e canFam3.chr9 39239789 316 - 61074082 I a score=1561278.000000 s hg38.chr17_JH159146v1_alt 5124 540 + 278131 ------tttgaactgtgcttttaacctctatgct-CAGT--------GGTGTACTGGTGTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAGCccaagttccatttgtgtaaatactcccatcatggccaatttcaagctgccCATGgtttaatagcca-gcttggaaaattcctgaatatttactg-atcagtgat-----taagagcca-gcttgccctaggacaccTT---TGACGATCCTACATGG-----CCTCTCTGCGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAtttt-aaaattgac--tattga-g----------------ttaatatttacttacaatgaaatatattcgttttaaatgtgcagt-ttgaagagccttgctaaatggacccatc---accac-agtcaagatacggaacacttccatcggtcccaaaggt---tctcaggtgccccttccaggttaaccagtt-aattctcactcctcccacacctttcagctcaggtgaccactgagcttatttctgtcactatagatgagattttatctttctgaaagtttcatataaatg s panTro4.chr17 66121994 540 - 82630442 ------tttgaactgtgcttttaacctctatgct-CAGT--------GGTGTACTGGTGTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAGCccaagttccatttgtgtaaatactcccatcatggccaatttcaagctgccCATGgtttaatagcca-gcttggaaaattcctgaatatttactg-atcagtgat-----taagagcca-gcttgccctaggacaccTT---TGATGATCCTACATGG-----CCTCTCTGCGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAtttt-aaaattgac--tattga-g----------------ttaatatttacttacaatgaaatatattcgttttaaatgtgcagt-ttgaagaggcttgctaaatggacctatc---accac-agtcaagatacggaacacttccatcagtcccaaaggt---tctcaggtgccccttccaggttaaccagtt-aattctcactcctcccacacctttcagctcaggtgaccactgagcttatttctgtcactatagatgagattttatctttctgaaagtttcatataaatg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24647739 556 - 73212453 ------tttgaactgtgcttttaacctctatgctgcagt--------gGTGTACTGGTGTAAAACAGTTTTCTGGGAAAT-GCA-TTTTAAAAGCccaagttccatttgtgtaaatactcccatcatggccaatttcaagctgccCATGGTTTAATAGCCAGGCTTGGAAAATTCCTGAATATTTACTGAATCAGTGGT-----TAAGAGCCAGGCTTGCCCTAGGACACCTCCTGCAACCATCCTACATGG-----CCTCTCTGCGCCTTGTGGACAATATCATC-TGAAGAAAGAATATT-------CAATTATTAttttaaaaattgac--tattgagg----------------ttaatatttacttacaatgaaatatattcattttaaatgtgcagtcttgaagaggcttgctaaatggacccatc---accacaagtcaagatacagaacacttccatcagtcccaaaggttnctctgaggtgccccttccaggttaaccagttaaactctcactcctcccacacctttcagttcagatgaccactgagcttatttctgtcactatagatgagattttatctttctgaaagtttcatataaatg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47873094 540 - 81552678 ------tttgaactgtgcttttaacctctgtgct-CAGT--------GGTGTACTGGTCTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAGCccaagttccatttgtgtaaatactcccatcatggccaatttcaagctgccCATGgtttaatagcca-gcttggaaaactcctgaatatttactg-atcggtggt-----taagagcca-gcttgccctaggacacctc---tgACGATCCTACATGG-----CCTCTCTGCACC-TGTGGACAGTATCGTC-TGAAGAAAGAATATT-------CAATTATGAtttt-aaaattgac--tattga-g----------------ttaatatttacttacaatgaaatatattcgttttaaatgtgcagt-ttgaagagccttgctaaatggacccata---accac-aatcaagatacagaacacttccatcagtcccaaaggt---tctcaggtgccccttccaggttaacaagtt-aattctcactcctcccacacctttcagctcaggtgaccactgagcttatttctgtcactatagatgagattttatctttctgaaagtttcatgtaaatg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52985912 540 + 80904711 ------tCTGCACTGTGCTTTTAACCTCTATGTT-CATT--------GGTGTACTGCTGTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAACccaagttcca-ttgcgtaaatactgccatcgtggccaatttcaagcttcccgtggtttaatagcga-gcttggaaaattcctgaatatttactg-atcggcggt-----taagagcca-gcttgctgtagtacacctc---tgACGATCCTACATGG-----CCTCTCTGTGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAtttt-aaaattgactttattga-g----------------ttaagatttgcttacaatgaaatatattcgttttaaatgtacagt-ttgaagaactttgctaaatggacctatc---accac-attcaagacacagaacgcttccatcagtcccaaaggt---tctcaggtgcctctaccaggttaaccagtt-aattcccactcct-ccacacctttcagctcaggtgaccactgagtttatttctgtcgctatagatgagattttatctttctgaaagtttcatataaatg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52508368 540 + 80997621 ------tctgcactgtgcttttaacctctatgtt-CATT--------GGTGTACTGCTGTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAACccaagttcca-ttgtgtaaatactgccatcgtggccaatttcaagcttcccgtggtttaatagcga-gcttggaaaattcctgaatatttactg-atcggcggt-----taagagcca-gcttgctgtagtacacctc---tgACGATCCTACATGG-----CCTCTCTGTGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAtttt-aaaattgactttattga-g----------------ttaagatttgcttacaatgaaatatattcgttttaaatgtacagt-ttgaagaaccttgctaaatggacctatc---accac-attcaagacacagaacgcttccatcagtcccaaaggt---tctcaggtgcctctaccaggttaaccagtt-aattcccactcct-ccacacctttcagctcaggtgaccactgagtttatttctgtcgctatagatgagattttatctttctgaaagtttcatataaatg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47553738 540 + 74645514 ------TCTGCACTGTGCTTTTAACCTCTATGTT-CACT--------GGTGTACTGCTGTAAAACAGTTTTCtgggaaat-aca-ttttaaaaacccaagTTCCA-TTGTGTAAATACTGCCATCGTGGCCAATTTCAAGCTTCCCGTGGTTTAATAGCGA-GCTTGGAAAACTCCTGAATATTTACTG-ATCGGCGGT-----TAAAACCCA-GCTTGCTGTAGTACACCTC---TGACCATCCTACATGG-----CCTCTCTGCGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAGTTT-AAAATTGACTTTACTGA-G----------------TTAAGATTTGTTTACAATGAAATATATTCGTTTTAAATGTGCAGT-TTGAAGAGCCTTGCTAAATGGACCCATC---ACCAC-ATTCAAGATACGGAAGGCTTCCATCAGTCCCAAAGGT---TCTCAGGTGCCTCCAGCAGGTTAACCAGTT-AATTCCCACTCCT-CCACACCTTTCAGCTCAGGTGACCACTGAGTTTATTTCTGTCGCTATAGATGACATTTTATCTTTCTGAAAGTTTCACATAAATG i papAnu2.chr16 C 0 M 1302 s chlSab2.chr16 9819884 539 - 75148670 ------tctgcgctgtgcttttaacctctatgtt-cact--------gGTGTACTGCTGTAAAACAGTTTTCTGGGAAAT-ACA-TTTTAAAAACccaagttcca-ttgtgtaaatactgccatcgtggccaatttcaagctt-ccGTGgtttaacagcca-gcttggaaaattcctgaatatttactg-atcagcagt-----taagagcca-gcttgccgtagtacacctc---tgACCATCCTACATGG-----CCTCTCTGCGCC-TGTGGACAGTATCATC-TGAAGAAAGAATATT-------CAATTATTAtttt-aaaattgactttattga-g----------------ttaatatttgcttacaatgaaatatattcgttttaaatgtacagt-ttgaagagccttgctaaatggacccatc---accac-attcaagatacagaacgcttccatcagtcccaaaggt---tctcaggtgcctctaccaggttaactagtt-aattcccactcct-ccacacctttcagctcaggtgaccactgagtttatttctgtcgctatagatgagattttatcttcctgaaagtttcatataaatg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112662356 534 + 159171411 ------TCTGAATAGTACTTTTAACCTCTGTGCT-CAGTGGTGTAGCGGTGTACTGGTGTAAAACAGTTTTCTGGGAAAC-ATATTTTTAAAAGCccaagttcca-ttgtgtaaatattcccatcgtggtcagtttcaagct---------------gcca-gcttgGAAAATTCCTGAATATTTACTG-ATGAGTGGT-----TAAGAGCCA-GCTCACCCTAGTACAGCAC---TGATGATCCTACATGG-----CCTCTCTGTGCC-TTTGGACAGTATCATC-GGAAGAAAGACTATT-------CAATTATTAtttt-aaaatcgactttattga-g----------------ttaagatgtacttataatgaaatatattcgttttaaatgtacagt-ttgaagaggcttgctaaatggacccatc---actac-aatcaagatccagaacacttccatcagtcccaaaggt---tcttgggtgcccctaccaaggtaaccagtt-aatccccattcct-ccacacctttcagctcaggtggccactgagtttatttctgtcactatggatgaaattttatctttctgaaagtttaatataaatg i calJac3.chr5 I 549 C 0 s mm10.chr11 99411958 513 + 122082543 ACTGACCTTTGACTCTGTTCTTGCCCACTGTGCA-CAGT--------GGACAGTGGGTGC----CAGGTGTCTCTGATGTCATG-CATAAGGAACCCTGGGC----TTGTGTCA--------------------------------------TAATATTCC--------AAATCCCTGAAGAGTCGACA-GTCAGTGCTCAGAGCAGGTACCG-GCTCGCTCAGGCAGGCCCC---TGCTGATCCCACGCGGTGCCACGTTTCCACGGC-TG--------ATCACCATGAAGGCAGATCAACCTTCTGGCCACTGTCATTTT-AGGGTTGTATCTGCAGA-GACTGTGTGCAGATACATCGCTCTGTACATATGGAACAATGAGTCCACTTAAAGCTCCTGgt-ctgaagaatcctgacaattagatataccgatgtcac-catcactgtcatcagtaggtccgtcaatgccaaaggc---tgtcttgggactcca----gtaagccagtc-catt--tattctt-cttgacctttcatcccaggaggccactga----cttgctgtcattagggaggagacttggttttcct-aaagtttcatataaatg i mm10.chr11 C 0 C 0 e canFam3.chr9 39239789 316 - 61074082 I a score=118386.000000 s hg38.chr17_JH159146v1_alt 5664 47 + 278131 gaatcatacagtatgta-ttcttttgtgtctg-gtttctttagctcagc s panTro4.chr17 66122534 47 - 82630442 gaatcatacagtatgta-ttcttttgtgtctg-gtttctttagctcagc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24648295 48 - 73212453 gaatcatacagtatgtagttcttttgtgtctg-gtttctttagctcagc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47873634 48 - 81552678 gaatcatacagtatgta-ttcttttgtgtctgtttttttttagctcagc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52986452 44 + 80904711 gaatcacacagtatgta-ttcttttgtgtctg-g---ctttagctcagc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52508908 44 + 80997621 gaatcacacagtatgta-ttcttttgtgtctg-g---ctttagctcagc i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9820423 47 - 75148670 gaatcatacagtatgta-ttcttttgtgtctg-gcttctttagctcagc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112662890 47 + 159171411 gaatcatatagtatgta-ttcttttgtgtctg-gtttctttagcttagc i calJac3.chr5 C 0 C 0 s mm10.chr11 99412471 44 + 122082543 ggatcataGAA-ATGta-ttcttttgtg--gg-gcttctttagcttagc i mm10.chr11 C 0 I 877 e canFam3.chr9 39239789 316 - 61074082 I e papAnu2.chr16 47554278 1302 + 74645514 M a score=56837.000000 s hg38.chr17_JH159146v1_alt 5711 24 + 278131 acaatcttggattcaGTTCCAAGA s panTro4.chr17 66122581 24 - 82630442 acaatcttggattcaGTTCCAAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24648343 24 - 73212453 acaatcctGGATTCAGTTCCAAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47873682 24 - 81552678 acaatcttggattcaGTTCTAAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52986496 24 + 80904711 acaatcttggattcatTTCCAAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52508952 24 + 80997621 acaatcttggattcatTTCCAAGA i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9820470 24 - 75148670 acaatcttggattcatTTCCAAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112662937 24 + 159171411 acaatgttggattcaGTTCCAAGA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39239789 316 - 61074082 I e mm10.chr11 99412515 877 + 122082543 I e papAnu2.chr16 47554278 1302 + 74645514 M a score=200216.000000 s hg38.chr17_JH159146v1_alt 5735 77 + 278131 TTTAAGAAACATTTACTA-CCCCATAAAAAAATCATTTACTCAGCTATATGATTAAGAATTTCATTTTCATTTGATAT s panTro4.chr17 66122605 76 - 82630442 TTTAAGAAACATTTACTA-CCCCATAAAAAA-TCATTTACTCAGCTACATGATTAAGAATTTCATTTTCATTTGATAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24648367 77 - 73212453 TTTAAGAAACATTTACTACCCCCATAAAAAA-TCATTTACTCAGCTATATGATTAAGAATTTCATTTTCATTTGATAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47873706 76 - 81552678 TTTAAGAAACATTTACTA-CCCCATAAAAAA-TCATTTACTCAGCTATGTGAATAAGAATTTCATTTTCATTTGATAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52986520 76 + 80904711 TTTAAGAAACATTTACTA-CCCCATAAAAAA-TCATTTACTCAGCTATATGAATAAGAATTTCATTTTCATTTGATAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52508976 76 + 80997621 TTTAAGAAACATTTACTA-CCCCATAAAAAA-TCATTTACTCAGCTATATGAATAAGAATTTCATTTTCATTTGATAT i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9820494 76 - 75148670 TTTAAGAAACATTTACTA-CCCCATAAAAAA-TCATTTACTCAGCTCTATGAATAAGAATTTCATTTTTATTTGATAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112662961 76 + 159171411 TTTAAAAAACATTTACTA-CCCCATAAAAAAATCATTTACTCAGCTATATGAATAAAAA-TTCATTTTCATTTGATAT i calJac3.chr5 C 0 I 297 s canFam3.chr9 39240105 66 - 61074082 TTAAAGAAACAT----TA-GCTCATAAAAAG-TCATTTTCTCAGCTATGTGAATAGA------TTTTTCAGTTGATGT i canFam3.chr9 I 316 C 0 e mm10.chr11 99412515 877 + 122082543 I e papAnu2.chr16 47554278 1302 + 74645514 M a score=523531.000000 s hg38.chr17_JH159146v1_alt 5812 213 + 278131 TTGAGTATGTTTTT-AAAGCCT--GAGTAGTTA-TTGATTGG-CTGGTTTTCTTAACTCTAAATAATTGCTAACTTT--CTTTTTCACTTTATGCCTTGTA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTAA------TTATTAGTTAAATAAGACAATTTTAATTTGCTAAGTTGATCGTTGT-AAAAGGTTTGCTTTTTTTCT--------------------------TCTTTCTTGTTTTAAA s panTro4.chr17 66122681 213 - 82630442 TTGAGTATGTTTTT-AAAGCCT--GAGTAGTTA-TTGATTGG-CTGGTTTTCTTAACTCTAAATAATTGCTAACTTT--CTTTTTCACTTTATGCCTTGTA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTAA------TTATTAGTTAAATAAGACAATTTTAATTTGCTAAGTTGATCATTGT-AAAAGGTTTGCTTTTTTTCT--------------------------TCTTTCTTGTTTTAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24648444 220 - 73212453 TTGAGTATATTTTT-AAAGCCCTGAAGTAGTTAGTTGATTGGCCTGGTTTTCTTAACTCTAAATAATTGCTAACTTTTCTTTTTTCACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAACTTTTTGGAAAACTAA------TTATTAGTTAAATAAGACAATTTTAATTTGCTAAGTCGATCATTGT-AAAAGGTTTGCTTTTTTTCT--------------------------TCTTTCTTGTTTTAAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47873782 208 - 81552678 TTGAGTATATTTTT-AAAGCCT--GAGTAGTTA-TTGATTGG-CTGGTTTTCTT-----TAAATAATTGCTAACTTT--CTTTTTCACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAGCTTTTTGG-AAACTAA------TTATTAGTTAAATAAGACAATATTAATTTACTAAGTCGATCATTGT-AAAAGGTTTGCTTTTTTTCT--------------------------TCTTTCTTGTTTTAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52986596 204 + 80904711 TTGAGTATATTTTT-AAAGCCT--GAGTACTTA-TTGATTGG-CTGGTTTTCTTAACTCTAAATAATTG----CTTT--CTTTTTCACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTGA------TTATTAGTTAAATAAGACAATTTTAATTTACTAAG----TCATTTT-AAAAGGTTTGC-CTTTTTCT--------------------------TCTTTCTTGTTTTACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52509052 204 + 80997621 TTGAGTATATTTTT-AAAGCCT--GAGTACTTA-TTGATTGG-CTGGTTTTCTTAACTCTAAATAATTG----CTTT--CTTTTTCACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTGA------TTATTAGTTAAATAAGACAATTTTAATTTACTAAG----TCATTTT-AAAAGGTTTGC-TTTTTTCT--------------------------TCTTTCTTGTTTTACA i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9820570 208 - 75148670 TTGAGTATATTTTT-AAAGCCT--GAGTAGTTA-TTGATTGG-CTGGTTTTCTTAACTCTAAATAATTG----CTTT--CTTTTTAACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTGA------TTATTAGTTAAATAAGACAATTTTAATTTACTAAGTCAATCATTTT-AAAAGGTTTGC-TTTTTTCT--------------------------TCTTTCTTGTTTTACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112663334 208 + 159171411 TTGAGAATATTTTT-AAAGCCT--GCGTAGTTA-TTGATTGG-TTGGTTTTCTTAACTCTAAATAATTA----CTTT--CTTTTTTACTTTATGCCTTATA--GAACTGCCTCCTTACTGGTGAACTTTTTGG-AAACTAA------TTGTTAGTTAAATAAGACAATTTTAATGTATTAAGTTGATCATTTA-AAAAGGCTTGC-TTTTTTCT--------------------------TTTTTCTTGTTTTAAA i calJac3.chr5 I 297 C 0 s canFam3.chr9 39240171 243 - 61074082 TTGAGTATATTTTTAAAAGCTT--GAGTAGTT--CAGATTGT-CTGGTTCTCTAAACTCTGAATAATCACAACCTTT--ATT-----CTTTATGTCTTAAGACAACTTGCCTCCTTACTGGTGGACTTTTTGG-AAACTAATGCCACTCATTATTTAAGTAAGAACATGTTAATTTATTAAGTTGATGCTTGTAAAAAAGTTTGCTTTTTTTTTGTCTTTTCTTTACCTCTCTTTTTAAATTTTTTAttttttaaa i canFam3.chr9 C 0 I 127 e mm10.chr11 99412515 877 + 122082543 I e papAnu2.chr16 47554278 1302 + 74645514 M a score=75484.000000 s hg38.chr17_JH159146v1_alt 6025 32 + 278131 AGATAAACCTTCTAGTATCAATACATCTCAAG s panTro4.chr17 66122894 32 - 82630442 AGATAAACCTTCTAGTATCAACACATCTCAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24648664 32 - 73212453 AGATAAACCTTCTAATATCAGCACATCTCAAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47873990 32 - 81552678 AGATAAACCTTCTAGTACCAACACATCTCAAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52986800 32 + 80904711 AGGTAAACCTTCTAGTATCAACACATCTCAAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52509256 32 + 80997621 AGGTAAACCTTCTAGTATCAACACATCTCAAG i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9820778 32 - 75148670 AGGTAAACCTTCTAGTATCAACATATCTCAAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112663542 32 + 159171411 AGATAAGCCTTCTAGTATCAACACATCCCGAG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39240414 127 - 61074082 I e mm10.chr11 99412515 877 + 122082543 I e papAnu2.chr16 47554278 1302 + 74645514 M a score=73509.000000 s hg38.chr17_JH159146v1_alt 6057 51 + 278131 TGGCTTGAACACACAG-----GCTTAGCT----------------TAtttttatttta-----------------------------------ttttattttatttt s panTro4.chr17 66122926 51 - 82630442 TGGCTTGAACACACAG-----GCTTAGCT----------------TATttttatttta-----------------------------------ttttattttgtttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24648696 41 - 73212453 TCGCTTGAACACACAG-----GCTTAGCT----------------TAtttttatttta---------------------------------------------tttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47874022 86 - 81552678 TGGCTTGAACACGCAG-----GCTTAGCT----------------TATttttattttattttattttattttattttattttattttattttattttattttatttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52986832 56 + 80904711 TGGCTTGAACACACAG-----GGTTAGCTTAT-----------GGTATttttatttta-----------------------------------ttttattttatttt i rheMac3.chr16 C 0 M 140 s macFas5.chr16 52509288 56 + 80997621 TGGCTTGAACACACAG-----GGTTAGCTTAT-----------GGTAtttttatttta-----------------------------------ttttattttatttt i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9820810 54 - 75148670 TGACTTGAACACACAG-----GGTTAACTATT-------------TAtttttatttta-----------------------------------ttttcttttatttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112663574 51 + 159171411 TGACTTGAACATGCAG-----GGTTAGTT----------------TATTGAtttttta-----------------------------------ttcattttgatttt i calJac3.chr5 C 0 I 3 s canFam3.chr9 39240541 71 - 61074082 tgacctgagctgacagcagatgcttaactgactgagccacccaggtgcccTTACCTCT-----------------------------------CTCTCTCTCTTTT- i canFam3.chr9 I 127 C 0 e mm10.chr11 99412515 877 + 122082543 I e papAnu2.chr16 47554278 1302 + 74645514 M a score=223782.000000 s hg38.chr17_JH159146v1_alt 6108 146 + 278131 ttgagacggaatctt---------gctctgttgcccaggctggagtg---cagtggtgtgatctt-ggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctccc-tagtagctgggactacaggcgcacgccaccactcctg s panTro4.chr17 66122977 146 - 82630442 ttgagacggaatctt---------gctctgttgcccaggctggagtg---cagtggtgtgatctt-ggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctccc-tagtagctgggactacaggcgcacgccaccactcctg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24648737 134 - 73212453 ttgagacggaatctt---------gctctgt--------------ct---cagtggtctgatcttgggcttactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcccgtagtagctgggactacaagcgcacgccaccactcctg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47874108 146 - 81552678 ttgagacggaatctt---------gctctgttgcccaggctggagtg---cagtggtgcgatctt-ggctcactgcaacctctgcctcctgggttcaagctattctcctgcctcagcctccc-tagtagctgggactacaggctcatgccaccactcctg i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52509344 146 + 80997621 ttgagacggagtctt---------gctctgttgcccaggctggagtg---cagtggtgtgatctc-ggctcactgcaacctctgcctcctgggttccagctattctcctgcctcagcctccc-gagtagctgggactccaggcacgggccaccactcccg i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9820864 146 - 75148670 ttgagacggagtcat---------gctctgttgcccaggctggagtg---cagtggtgtgatctc-ggctcactgcaacctctgcctcctgggttccagctattctcctgcctcagcctccc-gagtagctgggactccaggcacgggccaccactcccg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112663628 146 + 159171411 ttgagacagtgtctt---------gctatgttgcccaggctggagtg---caattgtgcagtctc-agctcacagcagcctccacctcctgggttcgagtgattctcctgcctcagcctccc-aagtagctgggactacaggtgcgtgccaccacgctgg i calJac3.chr5 I 3 C 0 s canFam3.chr9 39240612 130 - 61074082 TTAAAAGTGAACTTTAAAAAGTGAACTTTCTAGgggatgcttgagtggctcagtcggttggttaa-gcatc----caacttttgattct--ggctcaggtcatgatctca-------------gggttg-tgggactgca---------cactgtgtcag i canFam3.chr9 C 0 C 0 e mm10.chr11 99412515 877 + 122082543 I e papAnu2.chr16 47554278 1302 + 74645514 M e rheMac3.chr16 52986888 140 + 80904711 M a score=118875.000000 s hg38.chr17_JH159146v1_alt 6254 50 + 278131 gctaatttttgtatttttagtagagatagggtttcgccatgttagccagg s panTro4.chr17 66123123 50 - 82630442 gctaatttttgtatttttagtagagatagggtttcgccatgttagccagg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24648871 50 - 73212453 gctaatttttgtatttttagtagagatagggtttcgccatgttagccagg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47874254 50 - 81552678 gctaatttttgtgtttttagtagagatagggttttgccatgttagccagg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52987028 50 + 80904711 gctaatttttgtatttttagtagagataagatttcgccatgttagccagg i rheMac3.chr16 M 140 C 0 s macFas5.chr16 52509490 50 + 80997621 gctaatttttgtatttttagtagagataagatttcgccatgttagccagg i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9821010 50 - 75148670 gctaatttttgtatttttagtagagataggatttcgccatgttagccagg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112663774 50 + 159171411 gctcatttttgtatttttagtagagacagggtttaaccatgttggccagg i calJac3.chr5 C 0 C 0 s canFam3.chr9 39240742 17 - 61074082 gct---------------------------------ccacgctggccatg i canFam3.chr9 C 0 I 115 e mm10.chr11 99412515 877 + 122082543 I e papAnu2.chr16 47554278 1302 + 74645514 M a score=191103.000000 s hg38.chr17_JH159146v1_alt 6304 84 + 278131 ctggtctcgaactcctgacctcaagtgacccacctgccttggcctcccaaagtgctgggattacaggcatgagccaccgcgccc s panTro4.chr17 66123173 84 - 82630442 ctggtctcgaactcctgacctcaagtgacccacctgccttggcctcccaaagtgctgggattacaggcatgagctaccgcgccc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24648921 84 - 73212453 ctggtctcgaactcctgacctcaagtgacccacctgccttggcctcccgaagtgctgggattacaggcgtgagccaccgcgccc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47874304 84 - 81552678 cttgtctcgaactcctgacctcaagtgacccacctgccttggcctcccaaagtgctgggattacaggcgggagccaccgtgccc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52987078 84 + 80904711 ccgctctcgaactcctgacctcaagggatccgcatgccttggcctcccaaagtgctgggattacaagcgtgagccaccgcgccc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52509540 84 + 80997621 ccgctctcgaactcctgacctcaagggatccgcatgccttggcctcccaaagtgctgggattacaagcgtgagccaccgcgccc i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9821060 84 - 75148670 ttgctctcgaactcctgacctcaagggatccgcgtgccttggcctcccaaagtgctgggatcacaagcgtgagccaccgcgccc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112663824 84 + 159171411 ctggtctcaaactcctgacctcaagtggtccaccggctttggcttccaaaagtgctgggattacaggtgtgaaccactgtgccc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39240759 115 - 61074082 I e mm10.chr11 99412515 877 + 122082543 I e papAnu2.chr16 47554278 1302 + 74645514 M a score=9500.000000 s hg38.chr17_JH159146v1_alt 6388 3 + 278131 agc s panTro4.chr17 66123257 3 - 82630442 agc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24649005 3 - 73212453 agc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47874388 3 - 81552678 agc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52987162 3 + 80904711 agc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52509624 3 + 80997621 agc i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9821144 3 - 75148670 agc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112663908 3 + 159171411 ggc i calJac3.chr5 C 0 C 0 s canFam3.chr9 39240874 3 - 61074082 AGC i canFam3.chr9 I 115 C 0 e mm10.chr11 99412515 877 + 122082543 I e papAnu2.chr16 47554278 1302 + 74645514 M a score=1130787.000000 s hg38.chr17_JH159146v1_alt 6391 441 + 278131 cAGG-TTAGTTTATTTTAAAGTTCATTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCTAAAGAAATAA-AGCT-TTGGCTTTGTTTTTCTACGTGGTTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGTTT-GGGAGAATAACA-TTTA-TTTTTTTTTCTGATTATCAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTACTATAACAGTTCA--GTATATATACAGTATTTTCCAGACCTTCCACTAGCTTTTACACACAACATATGCA-TAT-CAAAGTAAAAATTTA-AATTTG-TAAAATTTTAGATTTTAGGATAATCAT-AAACAATGTACTTGTCTTTTGCTATAGGATTCTTTATTCAG--TTTTTTTTTCTTAGG s panTro4.chr17 66123260 439 - 82630442 cAGGGTTAGTTTATTTTAAAGTTCATTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCTAAAGAAATAA-AGCT-TTGGCTTTGTTTTTCTACGTGGTTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGTTT-GGGAGAATAACA-TTTA-TTTTTTTTTCTGATTATCAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTACTATAACAGTTCA--GTATATATACAGTATTTTCCAGACCTTCCACTAGCTTTTACACACAACATATGCA-TAT-CAAAGTAAAAATTTA-AATTTG-TAAAATTTTAGATTTTAGGATAATCAT-AAACAATGTTCTTGTCTTTTGCTATAGGATTCTTTATTCAG--TTTTTTTTTCTT--- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24649008 436 - 73212453 cAGGGTTAGTTTATTTTAAAGTTCATTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCTAAAGAAATAA-AGCT-TTGGCTTTGT---------------TTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCCAAGC-CATTTGTTTGGGGAGAATAACA-TTTT-TTTTTTTTTCTGATTATCAGAGTCATATATGCTGTTTGTTAAAACATTT-------------------TAATTTAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTACTATAACAGTTCA--GTGTATATACAGTATTTTCCAGACCTTCCACTAGCTTATACATACAACATATGCACCAT-CAAAGTAAAAATTTAGAATTTGTTAAAATTTTAGATTTTAGGATAATCATGAAACAATGTTCTTGTCTTTTGCTATAGGATTCTTTATTCAG-TTTTTTTTTTCTTAGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47874391 443 - 81552678 cAG--TTAGTTTACTTTAAAGTTCATTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCTAAAGAAATAA-AGCT-TTGGCTTTGTTTTTCTAGGTGGTTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGTTT-GGGAGAATAACA-TTTATTTTTTTTTTCTGATTATCAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTACTGTAACAGTTCA--GTATATATACGGTATTTTCCAGACTTTCCACTAGCTTATACATGCAATATATGCA-TAT-CAAAGTAAAAATTTA-AATTTG-TAAAATTTTAGATTTTAGGATAATCAT-AAACAATGTTCTTGTCTTTTGCTGTAGGATTCTTTATTCAGTTTTTTTTTTTCTTAGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52987165 426 + 80904711 cGGGGTTAGTTTATTTTAAAGTTCGTTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCT-AAGAAATAA-AGCT-TTGGCAACCT--------ATGGTTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGCTT-GGGAGAATAACA-TT---TTTTTTTTTCTAATTATCAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTAC---AACAGTTCA--GTATATATACAGTATTTTCCAGACCTTCCACTAGCTTATACACACAACATATGCA-TAT-CAAAGTAAAAATGTA-AATTTC-TAAATTTTTCGATTTTAGGATAATCAT-AAACAATGCTCTTGTCTTTTGCTATAGGATTCTTTATTCAG----TTTTTTTCTTCGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52509627 426 + 80997621 cGGGGTTAGTTTATTTTAAAGTTCGTTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCT-AAGAAATAA-AGCT-TTGGCAACCT--------ATGGTTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGCTT-GGGAGAATAACA-TT---TTTTTTTTTCTAATTATCAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTAC---AACAGTTCA--GTATTTATACAGTATTTTCCAGACCTTCCACTAGCTTATACACACAACATACGCA-TAT-CAAAGTAAAAATGTA-AATTTC-TAAATTTTTCGATTTTAGGATAATCAT-AAACAATGCTCTTGTCTTTTGCTATAGGATTCTTTATTCAG----TTTTTTTCTTCGC i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9821147 431 - 75148670 cAGGGTTAGTTTATTTTAAAGTTCGTTTCTTGAGACTCCAGAAGATGGCACTCTTACAAAGCCT-AAGAAATAA-AGCT-TTGGCAACAT--------ATGGTTGTTTTTCTAAGTGG-TTCCTTCCTGCTGTGACCCATTTGCAAAGC-CATTTGCCT-GGGAGAATAACATTT---TTTTTTTTTCTAATTATTAGAGTCATATATGCTGTTTGTT-AAACATTT-------------------TAA--TAAAG-GTAT------------------------TCTTCAAACCCCTTGCTAATCCCCAAGAGATAACTACTATAACAGTTCA--GTATATATATAGTATTTTCCAGACCTTCCACTAGCTTATACACACAACATACGCA-TAT-CAAAGTAAAAATTTA-AATTTG-TAAAATTTTCGATTTTAGGATAACCAT-AAACAATGCTCTTGTCTTTTGCTACAGGATTCTTTATTCAG---TTTTTTTTCTTAGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112663911 429 + 159171411 cAGGG-----TTATTTTAAGGTTCATTTCCTGAGACTCCAGAAGATGGCACTCTTACAAAGCCTAAAGAAATAA-AGCT-TTGGCAACCT--------ATGGCTGTTTTTCTAGGTGG-TTCCTTCCTGCTGTGACCTATTTGCAAAGC-CATTTGTTT-GGGAGTATAAAA-GTTATTTATTTTTTCTGATTATCGGAGTCATATATGCTGGTTATT-AAACATTT-------------------TAA--TGAAG-TTAT------------------------TTTTCAAACCCCTTGCTAATCCCCAAGAGATAACTCCTATAACAGTTCA--GTATATACACAATATTTTCCAGACCTTCCATTAGCTTATACACACAACATATGCA-TAT-AAAAGTAAAAATTTA-AATTTG-TGAAATTTTAGATTTTACGGTAATCGT-AAACAATATTCTTGTCTTTTGCTATAGGATTCTTTATTCGG---GTTTTTTTCTTAGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99413392 432 + 122082543 CAAGG-TAGTTT-TCTAAAAGTTCTCTTTCTGATGTTCCAGTAGGTGGCGCTGTCACCAAGCCAAAAGGAGTCC-TGCTGTTTACACCCT--------AAGTGGGTATTTCTAGGCGGTTTCCACTCTTCAGTTAAAATTTCATCAAACACATTTGTCT-AAATGACTAAAG-TCT--GTCTTGTCCTTGATCATTAGAGTAATACATGC-ACCCGTT-AAACGTTTAAGGCACACACAAAAGGGAAAA--TAGAGCAAAC------------------------TCTTGAAACCCTTAGCCG--TCCCAAGGGAT---TGCTGTAGCAATGCATCGAGCATAGCCCACATTTCCCAGGCACTTCCTCAGCTT-TATACAAAACAACCACA-CACACACAGTAAGAACTTA-AGTTTG-CAAAATGGCAGACATTAACATAAT-GT-AAGCAA----CATGTTTGTTGCT-------------TTTAA--TTTTTTTTTATTTGT i mm10.chr11 I 877 C 0 s canFam3.chr9 39240877 454 - 61074082 -AGGATTAATTT--TTTTAAGTTAACTTTCTGAGATTCCAGTAGGTGGCACTCTTACAAAGCCTAAAGAAGTGACTGAT-TTGGCAACCT--------AGGGTTGTTTTT-TAGATAG-TTCTCTTCTGTAGGGACCGACTTGCAAACC-CATTTGTTC-TGGATAATTAAA-ATTC-ATGGtttccctaattatcagagtcatacacgctctttgtt-aagcattt-------------------taa--gaaat-gtacagaagaaaatgtacagaagaatagtcttcaaagtccttggtaatttcctggagataaccactgtaacaactta--gtatata--caatattttccagacctttctgtagcctgtaaatacaacaaataca-tatAAAAAGTAACCATTTT-AATCTG-TAAAGGTTTAGATTTCAAAATAATCAT-GAACAATATGCTTGTCTTTTATTGTCTGATCCTGTACTTGG-ATTTTTTCTTATAAG- i canFam3.chr9 C 0 I 178 e papAnu2.chr16 47554278 1302 + 74645514 M a score=16749.000000 s hg38.chr17_JH159146v1_alt 6832 13 + 278131 AGTTC-----------TTTT-CTTT s panTro4.chr17 66123699 1 - 82630442 ------------------------T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24649444 14 - 73212453 AGTTC-----------TTTTCCTTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47874834 13 - 81552678 AGTTC-----------TTTT-CTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52987591 13 + 80904711 AGTTC-----------TTTT-CTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52510053 13 + 80997621 AGTTC-----------TTTT-CTTT i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9821578 13 - 75148670 AGTTC-----------TTTT-CTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112664340 13 + 159171411 AGTTC-----------TTTT-CTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99413824 24 + 122082543 AATCCCCACTTGAGTGTCTT-ATTT i mm10.chr11 C 0 I 5 s canFam3.chr9 39241509 13 - 61074082 AGTTA-----------TTTT-CTTT i canFam3.chr9 I 178 C 0 e papAnu2.chr16 47554278 1302 + 74645514 M a score=457760.000000 s hg38.chr17_JH159146v1_alt 6845 117 + 278131 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TTACTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATTAGGGCTTGTGGCCTAGTGAATGAGGGATAGACTCTCATGATAAG s panTro4.chr17 66123700 117 - 82630442 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TTACTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATTAGGGCTTGTGGCCTAGTGAATGAGGGATAGACTCTCATGATAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24649458 119 - 73212453 AAAGACAGACCCTTCCACTTCCGCAATTCATTTACTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATTAGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTTTCATGACAAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47874847 117 - 81552678 AAGGACAGA-CCTTCCACTTCTGCAATTCA-TTACTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATTAGGGCTTGTGGCCTAGTGAATGAAGGCTACACTTTCATGATAAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52987604 117 + 80904711 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TGGCTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATGAGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTGTCATGATAAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52510066 117 + 80997621 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TGGCTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATGAGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTGTCATGATAAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47555608 117 + 74645514 aaagacaga-cctTCCACTTCTGCAATTCA-TGGCTTGCCGAGTCCAAAGGGACCTCTCACATCTGTGTTGAATGAGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTGTCATGATAAG i papAnu2.chr16 M 1302 C 0 s chlSab2.chr16 9821591 117 - 75148670 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TGGCTTGCCGAGTCCAAAGGGACCTCTCAAATCTGTGTTGAATGAGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTGTCATGATAAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112664353 117 + 159171411 AAAGACAGA-CCTTCCACTTCTGCAATTCA-TTATTTGCTGAGTCCGAAGGGACGTCTCACATCTGTGTTGAATTGGGGCTTGTGGCCTAGTGAATGAGGGCTAGACTCTCATCATAAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99413853 105 + 122082543 AAGGATATT--------TTTTTTCAATTTG-TGTCTTGCACAGTCCAGAGGGCCCT-TTATACCTGTGCTGAATCAGAGATTGTGATCTGGTG-GTAGAGGCTGGAGTCTCATT---AG i mm10.chr11 I 5 C 0 s canFam3.chr9 39241522 117 - 61074082 AAAGATAGA-TCTATCACTTCTGCAGTTCA-TTAATTCCTGAGTCCAGAAAGACCCTTTACATCTGTGTTGAATTAGGGCTTGTGGTTTAGTGAATGAGGGCTGGAATCTCATGATAAG i canFam3.chr9 C 0 C 0 a score=781849.000000 s hg38.chr17_JH159146v1_alt 6962 271 + 278131 GATGCtgctatggtct--gaaagtttttgtcccccc--------------------------------atatttgtatgttgagacctaatcaccaatgacccagtattaggaggtggggttttc--gagagtggattaggtcatgagggtggagccctggcgaa-ggggattattgt-ccttataaatgaggccctggggcattgctttgtcccttctgcc-atgtgaggatatatcg---agaagctgtgtatgatccagaaagcgggtccttatcagacagtgaagctgcctccagaactgtgagaaata s panTro4.chr17 66123817 271 - 82630442 GATACtgctatggtct--gaaagtttttgtcccccc--------------------------------atatttgtatgttgagacctaatcaccaatgacccagtattaggaggtggggttttc--gagagtggattaggtcatgagggtggagccctggcgaa-ggggattattgt-ccttataaatgaggccctggggcattgctttgtcccttctgcc-atgtgaggatatatcg---agaagctgtgtatgatccagaaagcgggtccttatcagacagtgaagctgcctccagaactgtgagaaata i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24649577 272 - 73212453 GATGCtgctatggtct--gaaactttttgtcccccc-------------------------------tatatttatatgttgagacctaatcaccaatgacccagtattaggaggtggggttttc--aagagtggattaggtcatgagggtggagccctggcgaa-ggggattattgt-ccttataaatgaggccccggggcgttgctttgtcccttctgcc-atgtgaggatatatcg---agaagctgtgtatgatccagaaagtgggtctttatcagacactgaagctgcctccagaactgtgagaaata i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47874964 269 - 81552678 GATGGtgctatggtct--gaaactttttgtcccccc-------------------------------tatatttgtatg-tgagacctaatcaccaatgacccagtattaggcggtgggg-tttc--gagagtggattaggtcatgagggtagagccctggcaaa-ggagatgattgt--cttataaatgaggcccccgggcgttgctttgtcccttctgcc-atgtgaggatgtatcg---agaagctgtgtatgatccagaaagcgggtccttatcagacactgaagctgcctccagaactgtgagaaata i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52987721 268 + 80904711 GATGCtgctatggtct--caaag-tttggtcccccc--------------------------------atatttggatgttgagacctaatcaccaatgtgccagtattaggaggcggggtcttc----gagtggattaggtcctgatggtggagccctggccaa-ggggattattgt-ccttatcaatgaggccccagggaatggctttgtcccttctgcc-gtgtgaggatatatcg---agaagctgtgtatgatccagaaagtgggcccttatcagacactgaagctgcctccagaactgtgagaaata i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52510183 269 + 80997621 GATGCtgctatggtct--caaagttttggtcccccc--------------------------------atatttggatgttgagacctaatcaccaatgtgccagtattaggaggcggggtcttc----gagtggattaggtcctgatggtggagccctggccaa-ggggattattgt-ccttatcaatgaggccccagggaatggctttgtcccttctgcc-atgtgaggatatatcg---agaagctgtgtatgatccagaaagtgggcccttatcagacactgaagctgcctccagaactgtgagaaata i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47555725 270 + 74645514 GATGCTGCTATGGTCT--CAAAGTTTTGGTCCCCCC--------------------------------ATATTTGGATGTTGAGACCTAATCACCAATGTGCCAGTATTAGGAGGCGGGGTCTTC----GAGTGGATTAGGTCCTGATGGTGGAGCCCTGGCCAAGGGGGATTATTGT-CCTTATCAATGAGGCCCCAGGGAATGGCtttgtcccttctgcc-atgtgaggatatatcG---AGAAGCTGTGTATGATCCAGGAAGTGGGCCCTTATCAGACACTGAagctgcctccagaactgtgagaaata i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9821708 269 - 75148670 GATGCtgctatggtct--gaacgtttttgtcccccc--------------------------------atatttggatgttgagacttaatcaccaatgtgtcagtattaggaggcggggtcttc----gagtggattaggtcctgatggtggagccctggccaa-ggggattattgt-ccttatcaatgaggccccagggaatggctttgtcccttctgcc-atgtgaggatatattg---agaagctgtgtatgatccagaaagtgggcccttatcagacactgaagctgcctccagaactgtgagaaata i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112664470 309 + 159171411 GATGTtggtatggtct--gaaagtttttgtcccccctaaattagtatgttgTATTAGTATGcccccctaaattagtatgttgagacctaatcaccgatgtccgggtattaggaggtccggatattaggagagtggattaggtcatgagggtggagccctggagaa-ggggattattgt-ccttataaatgaggccccagagagttgctttgccccttctgccaatgtgaggatatatcgagaagaagctgtgtatgatccagaaagtgggcccttatcaggtactgaagctgccTCTGGAACTATGAGAAATG i calJac3.chr5 C 0 I 616 s mm10.chr11 99413958 229 + 122082543 GTCACTGCAGTGGCCCAAGAAAGTTCCTGTTCTCCT--------------------------------GAAA--------taaaatctaatcacctgtgtggtagcatcaagaggtgggacattt------------ggggttttacaggcagagcccttgcaca-tgggattagtgtgtcacagaacagaggtcccaggaagtaccctt-cctactctgcc-CTCTG-----------------------------CCCAGAAGGTGGGCCCTGAGCCGACACCCATTCTCCCTGCAGAATGGCAAGGAATC i mm10.chr11 C 0 C 0 e canFam3.chr9 39241639 0 - 61074082 C a score=46355.000000 s hg38.chr17_JH159146v1_alt 7233 13 + 278131 agtttctctcatt s panTro4.chr17 66124088 13 - 82630442 agtttctctcatt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24649849 13 - 73212453 agtttctctcatt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47875233 13 - 81552678 agtttctctcatt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52987989 13 + 80904711 agtttctctcatt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52510452 13 + 80997621 agtttctctcatt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47555995 13 + 74645514 agtttctctcatt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9821977 13 - 75148670 cgtttctctcatt i chlSab2.chr16 C 0 I 305 s calJac3.chr5 112665395 13 + 159171411 AGtttctcttatt i calJac3.chr5 I 616 C 0 s mm10.chr11 99414187 13 + 122082543 CCTTTCTGTCATT i mm10.chr11 C 0 C 0 e canFam3.chr9 39241639 0 - 61074082 C a score=167808.000000 s hg38.chr17_JH159146v1_alt 7246 53 + 278131 tttaagccacgcggtccgaggtattttgttctagccgcccgaagggactGATA s panTro4.chr17 66124101 53 - 82630442 tttaagccacgcggtccgaggtattttgttctagccacccgaagggactGATA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24649862 53 - 73212453 tttaagccacccagtccgaggtattttgttctagccgcccgaagggactGATA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47875246 53 - 81552678 tttaagccaaccagtccgaggtgttttgttctagccgcccaaagggactGATA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52988002 53 + 80904711 tttaagccacccagtccgaggtattttgttctagctgcccaaagggactGATA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52510465 53 + 80997621 tttaagccacccagtccgaggtattttgttctagctgcccaaagggactgaTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47556008 53 + 74645514 tttaagccacccagtccgAGGTATTTTGTTCTAGCTGCCCAAAGGGACTGATA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9822295 53 - 75148670 tttaagccacccagtccgaggtattttgttctagctgcccaaagggactgaTA i chlSab2.chr16 I 305 C 0 s calJac3.chr5 112665408 53 + 159171411 tttaagccaccaagtctgaggtattttgttctagcagcctgtagggactGATA i calJac3.chr5 C 0 C 0 s mm10.chr11 99414200 45 + 122082543 --------CCCTGGTTTAAAGTATCTTGTCACAGCCCTCCAAAGACTAGGGTG i mm10.chr11 C 0 C 0 e canFam3.chr9 39241639 0 - 61074082 C a score=839443.000000 s hg38.chr17_JH159146v1_alt 7299 238 + 278131 GATGCTGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAAGTGAAGACTTATAGGATATTTTGGCCAAGATAGTATC-AGAAAAGGACTATTATTTGGGTCTTGCTGGCTGTGCCATGAAATCCTAG-CCATTGGAACTTCAATGGGAAATTTTGTGAAATCACGAA--TTTTTTTCAGATAG-TT-TTTT---CCCCCACG s panTro4.chr17 66124154 237 - 82630442 GATGCTGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAAGTGAAGACTTATAGGATATTTTGGCCAAGATAGTATC-AGAAAAGGACTATTATTTGAGTCTTGCTGGCTGTCCCATGAAATCCTAG-CCACTGGAACTTCAATGGGAAATTTTGTGAAATCACGAA--TTTTTTTCAGATAG-TT-TTT----CCCCCATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24649915 241 - 73212453 GATGCCGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAGGTGAAGACTTATAGGATATTTTGGCCGAGATAGTATC-AGAAAAGGACTATTATTTGAGTCTTGCTGGCTGTGCCATGAAATCCTAGCCCATTGGAGCTTCAGTGGGAAATTTTGTGAAATCACGAA-TTTTTTTTCAGATAG-TT-TTTT--CNCCCCATG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47875299 238 - 81552678 GATGCCGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGACAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAGGTGAAGACTTATAGGACATTTTGGCCGAGATAGTATC-AGAAAAGGACTATTATTTGGGTCTTGCTGGCTGTGCCATGAAATCCTAG-CCATTGGAGCTTCAGTGGGAAATTTTGTGAAATCACGAA--TTTTTTTCAGATAG-CT-TTTT---CGCCCGTG i nomLeu3.chr19 C 0 I 2 s rheMac3.chr16 52988055 239 + 80904711 GATGCTGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCTACTGAAGACTTATAGGACATTTTGGCCAAGATAGTATC-AGAAAAGAACTATTATTTGGGTCTTGCTGGCTGTGCCGTGAAATCCTAG-CCATTGGAGCTTTAGTGGGAAATTTTGTGAAATCACAAA-TTTTTTTTCAGATAG-TT-TTTT---CCCCCATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52510518 239 + 80997621 GATGCTGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCTACTGAAGACTTATAGGACATTTTGGCCGAGATAGTATC-AGAAAAGAACTATTATTTGGGTCTTGCTGGCTGTGCCGTGAAATCCTAG-CCATTGGAGCTTTAGTGGGAAATTTTGTGAAATCACAAA-TTTTTTTTCAGATAG-TT-TTTT---CCCCCATG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47556061 240 + 74645514 GATGCTGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAACTGAAGACTTATAGGACATTTTGGCTGAGATAGTATC-AGAAAAGAACTATTATTTGGGTCTTGCTGGCTGTGCCGTGAAATCCTAG-CCATTGGAGCTTTAGTGGGAAATTTTGTGAAAtcacaaa-ttttttttcagatagttt-tttt---cccccatg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9822348 239 - 75148670 GATGCCGTGCTAGTTGCATTTCTTGTCAGTGAGAACAGGGCAAAGTGAAGTTACA-------TAATAAGAAATGTAATGCTTCCTTTGCCAACTGAAGACTTATAGGACATTTTGGCCAAGATAGTATC-AGAAAAGAACTATTATTTGGGTCTTGCTGGCTGTGCCGTGAAATCCTAG-CCATTAGCGCTTTAGTGGGAAATTTTGTGAAATCACAAA-TTTTTTTTCAGACAG-TT-TTTT---CCCCCATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112665461 247 + 159171411 GATGCTGTGCTAGTTGCATTTCTTGTCGGTGAGAATAGGGCAACGTGAACTGACGTTAACGTTAATTAGAAATGTAATGCTTCCTTTGCAGAGTGAAGACTTATAGGATATTTTGGCTGAGATAGTATC-AGAAAAGGACTGTTGTTTGGGTCTTGCTGGCTGTGCCATGAAATCGTAG-CCATTGGAGCTTCAGTGGGAAATTTTGTGAAATCACGACTTTTTTTTCCAGATAG-TT-TTTG---CCCCCGTG i calJac3.chr5 C 0 I 787 s mm10.chr11 99414245 205 + 122082543 GGTGCTGTGCTAACTGCATCTCAGGCCAGTGAGGACA---CAAATT----------------TCAGAAAGCATTTCACACTTTAGTCACTAGGGTGAGAC-TGGAGAATATCTC-ACAAAGATTGTGTAGAAAAAAAGACTGTGATTCGGAGCCTGGT-GCCATTCTATGAAGTTCAAG-CCAC---------------------TGTGAAGCCACCAA-TAACTTTTTAGACAG-CTGCCTT---CCCTTGTA i mm10.chr11 C 0 C 0 s canFam3.chr9 39241639 233 - 61074082 GATGTTGTGCTAATTGCATTTCTTAGCAGTGAGAATAGGGCAAAGTGAACTTATA-------TAATAA---ACCTAATGCATCCTTTGCCCACTGAAGAC-TGTAGAATATTCTG----AGATATTACT-AGGAAAGGACTGCAATTTTGGGTTTGATGGCTCTTCCATTAGATCCTAG-CCATTGGAGTTTAAATAGGAAATTTTGTGATATCAATGA--TTTTTTAAAGGTAG-TT-CCCCCCCCCCCCATA i canFam3.chr9 C 0 C 0 a score=52883.000000 s hg38.chr17_JH159146v1_alt 7537 25 + 278131 ATATAA----------------------------------------------------------------------------------------CCCTGCCggtagct--------gactt s panTro4.chr17 66124391 25 - 82630442 ATATAA----------------------------------------------------------------------------------------CCCTGCCggtagct--------gactt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24650156 25 - 73212453 ATATAA----------------------------------------------------------------------------------------CCTTGCtggtagct--------gactt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47875539 25 - 81552678 ATATAA----------------------------------------------------------------------------------------CCTTGCCggtagct--------gactt i nomLeu3.chr19 I 2 C 0 s rheMac3.chr16 52988294 25 + 80904711 ATATAA----------------------------------------------------------------------------------------CCTTGCCggtagct--------gactt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52510757 25 + 80997621 ATATAA----------------------------------------------------------------------------------------CCTTGCCggtagct--------gactt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47556301 25 + 74645514 ataTAA----------------------------------------------------------------------------------------CCTTGCCGGTAGCT--------GACTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9822587 25 - 75148670 ATATAA----------------------------------------------------------------------------------------CCTTGCCAgtagct--------gactt i chlSab2.chr16 C 0 C 0 s mm10.chr11 99414450 25 + 122082543 GTATAA----------------------------------------------------------------------------------------CCTTGTAGGCATCT--------GAATT i mm10.chr11 C 0 I 218 s canFam3.chr9 39241872 121 - 61074082 ATATAACTTAAtttattttaaaagattcatttacttattcacaagagacacacacacacagaggcctagatataggcagagggagaggcaggctccctacagggatccccatgcaggactt i canFam3.chr9 C 0 I 10 e calJac3.chr5 112665708 787 + 159171411 I a score=398553.000000 s hg38.chr17_JH159146v1_alt 7562 178 + 278131 ccccaagagcatatag-tccaggaga-ccaaggaaga---------a---ctgaa------agg-------ccttt-gtgatctatctttgg-aggtcatat-ac-tgtc---------acttc-ttcaataaatc---------------------------------tgctcctcgttcattgtgagaaggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcaccaacctggaggctg s panTro4.chr17 66124416 178 - 82630442 ccccaagagcatatag-tccaggaga-ccaaggaaga---------a---ctgaa------agg-------ccttt-gtgacctatctttgg-aggtcatat-ac-tgtc---------acttc-ttcaataaatc---------------------------------tgctcctcattcattgtgagaaggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcaccaacctggaggctg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24650181 188 - 73212453 tcccgagaccgtacagttccaggagagccaaggaaag---------aaacttgaa------agg-------cttttggtgacctatctttggaaggtcatat-acttatc---------acttctttcaataaatc---------------------------------tgctcctcattcattgtgggaaggaactacacaaagggaatgaagaccaggagg-----------------------------------cagggatcactggagccaacctggaggctg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47875564 178 - 81552678 ccctgagagcatacag-tccaggaga-ccaaggaaga---------a---ctgaa------agg-------ctttt-gtgacctatctttgg-aggtcatat-ac-tgtc---------acttc-ttcaataaatc---------------------------------tgctcctcatgcattgtgggagggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcaccaacctggaggctg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52988319 178 + 80904711 ccccgagaacatatag-tccaggaaa-ccaaggaaga---------a---ctgaa------agg-------cttct-gtgatctgtctttgg-aggtcatat-ac-tgtc---------acttc-ttcgataaatc---------------------------------tgctcctcagtcattgtaggagggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcgccaacctggaggctg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52510782 178 + 80997621 ccccgagaacatatag-tccaggaaa-ccaaggaaga---------a---ctgaa------agg-------cttct-gtgatctgtctttgg-aggtcatat-ac-tgtc---------acttc-ttcgataaatc---------------------------------tgctcctcattcattgtaggagggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcgccaacctggaggctg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47556326 178 + 74645514 CCCCGAGAGTATATAG-TCCAGGAGA-CCAAGGAAGA---------A---CTGAA------AGG-------CTTTT-GTGATCTATCTTTGG-AGGTCATAT-AC-TGTC---------ACTTC-TTCAATAAATC---------------------------------TGCTCCTCATTCACTGTGGGAGGGAACTACAC-AAGGGAATGAAgaccaggagg-----------------------------------cagggatcactGGCGCCAACCTGGAGGCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9822612 178 - 75148670 ccccgagagcatatag-tccaggaaa-ccaaggaaga---------a---ctgaa------agg-------cttct-gtgatctatctttgc-aggtcatat-ac-tgtc---------acttc-ttcaataaatc---------------------------------tgctcctcattcattgtgggagggaactacac-aagggaatgaagaccaggagg-----------------------------------cagggatcactggcgccaacctggaggctg i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39242003 272 - 61074082 ctccaggatcac-----gccctgagt-caaaggcagatgctgaacca---ctgagccacccaggcgttccTCTCCT-GTAATGTAACTCTA--AGGCCAGATGAC-TGCCCTCAAAGTGAGCAA-TCCAAGAAACCAATCCAGAATTGAAATGCCTTAGAAAAAaaagattttatttatttattttgagagagagc-atgg-gtgtgggtgagggcgaggaggggcagagggagaaagagaatctcaagcagactccaccgtgagcatagagcccaacatggggcttg i canFam3.chr9 I 10 I 376 e mm10.chr11 99414475 218 + 122082543 I e calJac3.chr5 112665708 787 + 159171411 I a score=767205.000000 s hg38.chr17_JH159146v1_alt 7740 337 + 278131 ccacaAGTCACCAATATGTGGGTGCTATTTAAAACCATGGGATTggctgggtgcggtggctcacacctgtaatcccagcactttgggaggccga-ggcgggcagatcatgaggtcaagagatggagaccatcctgg--ccaacatggcaaaa--ccctgtctctaccaaaattac-aaaaattagctgggcgtggtgg-tgtatgcctatagccccagctactcaggaggctgaggcag-aagaatcgcttgaacctgggaggtggaggttgcagtgagccaagattacaccattgtactccagcctgggcaacagagcgagactccctctcaaacaaacaaaca s panTro4.chr17 66124594 337 - 82630442 ccacaAGTCACCAATGTGTGGGTGCTATTTAAAACCATGGGATTggccgggtgcggtggctcacacctgtaatcccagcactttgggaggccga-ggcgggcagatcatgaggtcaagagatggagaccatcctgg--ccaacatggcaaaa--ccctgtctttaccaaaattac-aaaaattagctgggcgtggtgg-tgtgtgcctatagccccagctactcaggaggctgaggcag-aagaatcgcttgaacctgggaggtggaggttgcagtgagccaagattacaccattgtactccagcctgggcaacagagcgagactccctctcaaacaaacaaaca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24650369 345 - 73212453 ccacaagtcaccaatgtgtagatggtatttaaaaccatgggattggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccgagggtgggcagatcatgagttcaagagatggagaccatccttggcccaacatggcaaaagcccttgtctctatcaaaactacaaaaaattagctgggtgtggtggttgcgtgcctgtagctctagctactcaggaggctgaggcagaaagaatcgcttgaacctgggaggtggaggttgcagtgaggcaagatcacaccattgcactccagcctgggcaacagagcgagactccctctcaaacaaacaaaca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47875742 337 - 81552678 ccacaAGTCACCAATGTGTAGATGGTATTTAAAACCATGGGATTggccgggtgtggtggctcacgcctgtagtcccagcactttgggaggccga-ggcaggcagatcatgaggtcaagagatggagaccatcctgg--ccaacatggcaaaa--ccctgtctctaccaaaattac-aaaaattagctgggtgtggtgg-tgcgtgcttgtagctccagctactcaggaggctgaggcag-aagaatcacttgaacctgggagatggaggttgcagtgagccaagatcacaccattgcactccagcctgggcaacagagcgagactccctctcaaacaaacaaaca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52988497 326 + 80904711 ccacaAGTCACCAATGTGTAGATGTTATTTGAAACCATGGGATTggccaggtgtggtggctcacgcctgtaattccagcactttgggaggccga-ggcgggcggatcatgaggtcaagagatggagactatcctgg--ccaacatggcaaaa--ccctgtctctaccaaaaatac-aaaaagcaggtgggtgtggtgg-tgcatgcccgtagccccagctactcagggagctggggcag-aagaatcgcttgaacctgggaggtg-----------gagacaagatcgcgccactgcaatccagcctgggcaacagagtgaggctccctcaaaaacaaacaaaca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52510960 326 + 80997621 CCACAAGTCACCAATGTGTAGATGTTATTTGAAACCATGGGATTggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccga-ggcgggcggatcatgaggtcaagagatggagactatcctgg--ccaacatggcaaaa--ccctgtctctaccaaaaatac-aaaaatcaggtgggtgtggtgg-tgcatgcctgtagccccagctactcaggaggccgaggcag-aagaatcgcttgaacctgggaggtg-----------gagacaagatcacgccactgcaatccagcctgggcaacagagtgaggctccctcaaaaacaaacaaaca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47556504 337 + 74645514 CCACAAGTCACCAATGTGTAGATGTTATTTAAAACCATGggattggccaggtgcggtggcgcacgcctgtaatcccagcactttgggaggccga-ggcaggcagatcatgaggtcaagagatggagactatcctgg--ccaacatggcaaaa--ccccgtctctaccaaaaatac-aaaaattaggtgggtgtggtgg-tgcatgcctgtagccccggctactcaggaggctgaggcag-aagaatcgtttgaacctgggaggtggaggttgcagtgagacaagatcacgccactgcaatccagcctgggcaacacagtgaggctccctcaaaaacaaacaaaca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9822790 337 - 75148670 CCACAAGTCACCAATGTGTAGATGTTATTTGAAACCATGGGATTggccaggcgcggtggctcacgcctgtaatcccagcactttgggcggccga-ggcgggtggatcatgaggtcaagagatggagactatcctgg--ccaacatggcaaaa--ccccgtctctaccaaaaatac-aaaaattaggtgggtgtggtgg-tgcgcgcctgtagccccagctactcaggaggctgaggcag-aagaatcacttgaacctgggaggtggaggttgcagtgagacaagatcacgccactgcaatccagcctgggcaacagaataagactccctcaaaaacaaacaaaca i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39242275 376 - 61074082 I e mm10.chr11 99414475 218 + 122082543 I e calJac3.chr5 112665708 787 + 159171411 I a score=1593307.000000 s hg38.chr17_JH159146v1_alt 8077 513 + 278131 aa-------------------aCCCATGGGATAAG-ATCAGGGAGGAGAGGCTGGGGAGGGATCAGATGAGGTTACCTGGGGAGGGAGT--ATAGAGAAAAGACAAGAGGATTGAGCCAACATTCA---GTCACAGA---------------------AGTCTGAGAAAAAGCTGCCTACAGAGTGATGGCTCTGGGAGCTTTGTGGTAAAAA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTATGGTACT-AGCTAAT-AAATGACCC-TTG-CATTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGAGTCTCACACCATTCTTATGTAGTTGTAAGG-AAAACAGATGTTATTT--AAAGCAGTAACT--ATTTGCAGACACTTTTGAGCACCAGGGAAGTAGAATCC-TTTATTTATTACTTGGGGGCTGTGGACCTTGTTCAG----AGGCCTTGATAAAATCCTTTTGAGTCTGAAAGGTAAAGGTTACCCTAGGATGTGTGCTGGAAGGTGAAGGCTAGACAAAGAGAGCTGA------GCGTATAATAAA-GTGA-GATGAGTGGAGGATC-TGAA s panTro4.chr17 66124931 521 - 82630442 aa-------c--------aaaACCCATGGGATAAG-ATCAGGGAGGAGAGGCTGGGGAgggattagatgaggttacctggggagggagt--atagagaaaagacaagaggattgagccAACATTCA---GTCACAGA-----------------GAGAAGTCTGAGAAAAAGCTGCCTACAGAGTGATGGCTCTGGGAGCTTTGTGGTAAAAA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTATGGTACT-AGCTAAT-AAATGACCT-TTG-CATTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGAGTCTCACACCATTCTTATGTAGTTGTAAGA-AAAACAGATGTTATTT--AAAGCAGTAACT--ATTTGCAGACACTTTTGAGCACCAGGGAAGTAGAATCC-TTTATTTATTACTTGGGGGCTGTGGACCTTGTTCAG----AGGCCTTGATAAAATCCTTTTGAGTCTGAAAGGTAAAGGTTACCCTAGGATGTGTGCTGGAAGGTGAAGGCTAGACAAAGAGAGCTGA------GCATATAATAAA-GTGA-GATGAGTGGAGGATC-TGAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24650714 547 - 73212453 aa-------caaacaaa-aaaacccgtgggattag-atcagggaggagaggctggggagggattagatgaggttacctggggaggaagt--atagagagaagacaagaggattgagccaacattca---gtcacaga-----------------gagaagtctgagaaaaagctgcctacagagtgatggctctgggagctttgtggtaaaaatatttccaacaagaagggaAATGCTGA-GAAACCTATGGTACTAAGCTAATAAAATGACCC-CTGCCATTTATACTTTGTGCAAAAATC-CCTTTCCCCGTTTGAAGTCTCACACCATTCTTATGTAGTTGTAAGGAAAAACAGATGTTATTTTAAAAGCAGTAAACTAATTTGCAGACACTTTTGAGCACCAGGGAAGTATAATCCTTTTATTTATTACTTGGGGGCTGTGGACCTTGTTCAG----AGGCCTTGAT--AATCCTTTTGAGTCTGAAAGGTAAAGGTTGCCCTAGGATGTGTGCTGGAAGGTGAGGGCTAGACAAAGAGAGCTGA------GCATATGATAAATGTGAGGATGAGTGGAGGATCGTGAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47876079 514 - 81552678 a--------------------aCCCATGGGATTAG-ATCAGGGAGGAGAGGCTGGGGAGGGATTAGATGAGGTTACCTGGGGAGGGGTT--ATAGAGAGAAGACAAGAGGATTGAGCCAACATTCA---GTCACAGA-----------------GAGAAGTCTGAGAAAAAGCTGCCTATGGAGTGATGGCTCTGGGAGCTTTGTGGTAAAAA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTATGGTACT-AGCTAAT-AAATGACCC-CTG-CATTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGAGTCTCACACCATTCCTATGTAGTTGTAAGG-AAAACAGATGTTATTT--AAAGCAGTAACT--ATTTGCAGACACTTTTGAGCACCAGGGAAGTAGAATCC-TTTATTTATTACTTGGGTGCTGTGGACCTTCTTCAG----AGGCCTTGAT--AATCCTTTTGAGTCTGAAAGGTAAATGTCCCCCTAGGATGTGTGCTGGAAGGTAAGGGCTAGACAAAGAGAGCTGA------GCATATGATAAA-GTGA-GATGAGTGGAAGATC-TGAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52988823 529 + 80904711 aaaaacaaacaaacaaacaaaACCCTTGGGATTAG-AGCAGGGAGGAGAGGCTGTGGAGGGATTAGATGAGGTTACCTGGGGCGGGAGT--ATAGAGAGGAGACAAGAGGATTGAGACAACATTCA---GTCAC---------------------AGAAGTCTCAGAAAAAGCTGCTTATGGAGTAATGGCTCTGGGAGCTTTGTGGAAAACA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTGTGGTACT-AGCTAAT-AAATGACCC-CTG-CTTTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGGGTCTCACACCATTCCTATGTAGTTGTAagg-aaaacagatgttattt--aaagcagtaact--a-ttgcagacacttttgagcaccagggaagtagaatcc-tttatttattacttgggggctatggatcttgttcag----aggccttgat--aatccttttgagtctgaaaggtaaaggttgccctaggatgtatgctggaaggtgagggctagacaaagagagctga------gcgtataataaa-gtga-GATGAGTGGAGGATC-TGAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52511286 529 + 80997621 aaaaacaaacaaacaaacaaaACCCTTGGGATTAG-AGCAGGGAGGAGAGGCTGTGGAGGGATTAGATGAGGTTACCTGGGGCGGGAGT--ATAGAGAGAAGACAAGAGGATTGAGACAACATTCA---GTCAC---------------------AGAAGTCTCAGAAAAAGCTGCTTATGGAGTAATGGCTCTGGGAGCTTTGTGGAAAACA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTGTGGTACT-AGCTAAT-AAATGACCC-CTG-CTTTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGGGTCTCACACCATTCCTATGTAGTTGTAagg-aaaacagatgttattt--aaagcagtaact--a-ttgcagacacttttgagcaccagggaagtagaatcc-tttatttattacttgggggctatggaccttgttcag----aggccttgat--aatccttttgagtctgaaaggtaaaggttgccctaggatgtatgctggaaggtgagggctagacaaagagagctga------gcgtataataaa-gtga-GATGAGTGGAGGATC-TGAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47556841 533 + 74645514 aaaaacaaacaaacaaacaaaacccttggGATTAG-AGCAGGGAGGAGAGGCTGTGGAGGGATTAGATGAGGTTACCTGGGGCGGGAGT--ATAGAGAGAAGATAAGAGGATTGAGACAACATTCA---GTCACAGA-----------------GAGAAGTCTCAGAAAAAGCTGCTTATGGAGTAATGGCTCTGGGAGCTTTGTGGAAAACA-ATTTCCAA-GAGAAGGG-AATGCTGA-GAAA-CTGTGGTACT-AGCTAAT-AAATGACCC-CTG-CATCTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGGGTCTCACAGCATTTCTATGTAGTTGTAAGG-AAAACAGATGTTATTT--AAAGCAGTAACT--A-TTGCAGACACTTTTGAGCACCAGGGAAGTAGAATCC-TTTATTTATTACTTGGGGGCTATGGACCTTGTTCAG----AGGCCTTGAT--AATCCTTTTGAGTCTGAAAGGTAAAGGTTGCCCTAGGATGTATGCTGGAAGGTGAGGGCTAGACAAAGAGAGCTGA------GCGTATAATAAA-GTGA-GATGAGTGGACGATc-tgaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9823127 532 - 75148670 aaaaacaaacaaacaaacaaaACCCTTGGGATTAG-AGCAGGGAGGAGAGACTGTGGAGGGATTAGATGAGGTTACCTGGGGCGGGAGT--ATAGAGAGAAGACAGGAGGATTGAGACAACATTCA---GTTACAGA-----------------GAGAAGTCTGAGAAAAAGCTGCTTATGGAGTGATGGCTCTGGGAGCTTTGTGGAAAA-A-ATTTCCAA-GAGAAAGG-AATGCTGA-GAAA-CTGTGGTACT-AGCTAAT-AAATGACCC-CTG-CATTTATAC-TTGTGCAAAA--T-CCTTTCCCC--TTTGGGTCTCACACCATTCCTATGTAGTTGTAagg-aaaacagatgttattt--aaagcagtaact--a-ttgcagacacttttgagcaccaaggaagtagaatcc-tttatttattacttgggggctatggaccttgttcag----aggccttgat--aatccttttgagtctgaaaggtaaaggttgccctaggatgtatgctggaaggtgagggctagacaaagagagctga------gcgtataataaa-gtga-GATGAGTGGAGGATC-TGAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112666495 507 + 159171411 -------------------aaaactatgggatgagaATTGGGGAGGAGAGGCTGTGGAgagatttgatga-gttacctggggagggagt--gtagagagaagacaagaggattgagccaacactca---gtcacaga-----------------gagaagtctgaggaaaAGCTGCTTATGGAGTGATATCTCTGGCAGCTTTGTGGAAAATA-ATTTCCAA-GAGAAGGG-AATGCTGA-AAAA-CTATGATACC-AGCTAAT-AAATGACCC-TTG-CATTTATAC-TTGTGCAAAA--T-CCTTTCTCC--TTTGGGTCTCACACCATTCTAATGT-------AGG-AAAACAGATGTTATTT--AAAATAGTAACT--ATTTGCAGGCATTTTTGAGCACTGGGGAAGTAGAATCC-TTTGTTTATTACTTGGGGATGGTGGAGCTTGTTCAG----AGACCTGGAT--AATCCTTTTGAGTCTGAAAGGTAAA-GTCACCGTAGAATATGTGCCGGAAGGTGAGGGCTAAACTAAGAGAGCTGA------GTGTATAATAAA-GTGA-GGTAAGTGGAGGATC-TGAA i calJac3.chr5 I 787 C 0 s canFam3.chr9 39242651 504 - 61074082 -------------------agaaccatgggattag-------------------------------ttaagatcacctagggaatgagtggagagagaggggacaggaagattgggccaacattcagaggtcataaaagagtttgaaaaaaaaaaaaaagagtgagaaaatgtggcaagtgaggtaTTGTCTCAGGGAACCCAGTGGAGAAAT-GCTGATAA-AAAAGAGG-AATGTTGATAAAA-CTAAGATAGT-AGCTAAG-AACCAATAAGCTG-GGTTTATCC-TTGTGCAAAA--TGCCTTTCTTC--TTTGAGTCTCACACAAGTCAGACATAGTTGTAagg-aaaacagatgttattt--gaaacagcaact--atgtgcaactacttctgagtaccagaaaaggggcatcc-----tttattac---------atggaccttgttcaggaaaagattttgat--aatctttttggacctaaaaggtaaa-gttctcctatgacatattctagaaggggagggctaggc--agagagttaaattgctatgcataataTA-GGGA-GATAAGTGGAGCACT-TCAG i canFam3.chr9 I 376 C 0 e mm10.chr11 99414475 218 + 122082543 I a score=962869.000000 s hg38.chr17_JH159146v1_alt 8590 351 + 278131 ACCATT--AAAAATA---tttttttcttttctttttttt-gagacaggg-tcttactctgttgcccagg-ctggagtg-cagtggcacgataacagctcactgca-ttcttgaccttc-ccaggctcaggtaatccttcc-acctcagcc-tcccaagtagctgggac-tacaggtgtgcacccccacacccgactaatttttttttattttttaaattttttttgtagagacagagttttaccatgttgtccaggctggtcttgaattcctgggcccaagcaatctgcccatattggcctcccaaagtgctgggattacagacgtgagccactgcatctggccATATAAATGATATTAAAAGGA s panTro4.chr17 66125452 351 - 82630442 ACCGTT--AAAAATA---tttttttcttttctttttttttgagacaggg-tcttactctgttgcccagg-ctggagtg-cagtggcacgataacagctcactgca-ttcttgacctcc-ccaggctcaggtaatccttcc-acctcagcc-tcccaagtagctgggac-tacaggtgtgcacccccacacccgattaatttttttat-ttttttaatttttttttgtagagacagagttttaccatgttgtccaggctggtcttgaattcctgggcccaagcaatctgcccatatcagcctcccaaagtgctgggattacagacgtgagccactgcatctggccATATAAATGATATTAAAAGGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24651261 353 - 73212453 ACTATT--AAAAAAATAtttttttccttttcttttttcttgagacagggntcttactctgttgcccaggtctggagtgacagtggcacgataacaactcactgcatttcttgaccttcgccaggctcaggtaatcctcccaacctcagccttcccaagtagctgggacgtacaggtgtgcacccccacgcccgattaatttt------tttttta---tttttttgtagagacagag-tttgccatgttgtccaggctggtcttgaattcctgggctcaagcaatctgcccatgtcggcctcccaaagtgttgggattacagacatgagccattgcatctggccACATAAATAACATTAAAAGGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47876593 340 - 81552678 ACCATT-AAAAAATA---tttttttcttttctttttctt-gagacagga-tcttactctgttgcccagg-ctggagtg-cagtggcacgataacagctcactgca-ttcttgacctcg-ccaggctcaggtaatcctccc-acctcagcc-tcccaagtagctgggac-tacagatgtgcacccccacacccgattaatttt------tttt------gttttttgtagagacagagttttgccatgttgtccaggctagtcttgaattcctgggctcaagcaatctgcccatgtcggcctcccaaagtgttgggattacagacgtgagccattgcacctggccATATAAATAATATTAAAAGGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52989352 339 + 80904711 ACCATTAAAAAAATA---tttttttcttttctttttttt-gagacagag-tcttactctgttgcccagg-ctggagtg-cagtggcatgataacagctcaccgca-ttcttgacctcc-ccaggctcaggtaatcctccc-acctcagcc-ccccaagtagctgggac-tacaggtgtgcacccccacacccgattaa----------tttttt----tttttttgtagagacaggggttttccatgttgttcaggctggtcttgaactcctacgtccaagcaatctgcccatgtcggcctcccaaagtgttgggattacagacgtgagccattgcatctggccATATAAATAATATTAAAAGGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52511815 340 + 80997621 ACCATTAAAAAAATA---tttttttcttttctttttttt-gagacagag-tcttactctgttgcccagg-ctggagtg-cagtggcatgataacagctcactgca-ttcttgacctcc-ctaggctcaggtaatcctccc-acctcagcc-ccccaagtagctgggac-tacaggtgtgcacccccacacccgattaa---t------tttttt----tttttttgtagagacagagttttgccatgttgttcaggctggtcttgaactcctaggcccaagcaatctgcccatgtcggcctcccaaagtgttgggattatagacgtgagccattgcatctggccATATAAATAATATTAAAAGGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47557374 343 + 74645514 accattaaaaaaata---tttttttcttttctttttttt-gagacagag-tcttactctgttgcccagg-ctggagtg-cagtggcatgataacagctcactgca-ttcttgacctcc-ccaggctcaggtaatcctccc-acctcagcc-ccccaagtagccgggac-tacaggtgtgcacccccacaccccattaatttt------cttttt----tttttttgtagagacagaattttaccatgttgttcaggctggtcttgaactcctgggcccaagcaatctgcccatgtcggccgcccaaagtgttgggattacagacgtgagccattgcatctggccatataaataatattaaaagga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9823659 342 - 75148670 ACCATTAAAAAAATA---tttttttcttttctttttttt-gagacagag-tcttactctgttgcccagg-ctggagtg-cagtggcatgataacagctcactgca-ttcttgacctcc-ccaggctcaggtaatcctccc-acctcagcc-ccccaagtagctgggac-tacaggtgtgcacccccacacccgattaa-ttt------tttttt----tttttttgtagagacagagttttgccatgttgttcaggctggtcttgaactcctgggcccaagtaatctgcccatgttggcctcccaaagtgttgggattacagacatgagccattgcatctggtcATATAAATAATATTAAAAGGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112667002 328 + 159171411 ACCATT-AAAGAATC---tttttttcttttctttttctt-gagacagag-tcttactctgttgccctgg-ctagagtg-cagtggcacgataacagctcactgca-ctcttgactacc-ccaggctcaggtaatcctccc-acctcagcc-tctcaagtagc-------taggggtgtgcaccctcacacctggcaa-----------ttt-------tttttttgtagaaacaggattttgccatgttgtccaggctggtcttgaactcctgggcccaatcaatctgctcatgtcagcctcccaaagtgttgagattacagacgtgagccattgcatctggccATGTAAATAATATTAAAAGGA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39243155 0 - 61074082 C e mm10.chr11 99414475 218 + 122082543 I a score=1034581.000000 s hg38.chr17_JH159146v1_alt 8941 317 + 278131 AAAGCTGCATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCCTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAACACAACT-CCTCCCTCTCCCTTCTGCTTCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGGTTTCATACAGTAAATaataataagacacaaatattgagtactttctaggtgccaatagtttccaggttcctagtgcttta-ggtacacg--------acctcatttcatcttcacaaaaccc--gtgccatgaagcaggtgcagtcattgctatca-tttccactt s panTro4.chr17 66125803 317 - 82630442 AAAGCTGCATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAACCATT----GGCCTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAGCAAAACT-CCTCCCTCTCCCTTCTGCTCCTTTGACACTCC-TAATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGGTTTCATACAGTAAATaataataagacacaaatattgagtactttctaggtgccaatagtttccaggttcctagtgcttta-ggtacacg--------acctcatttcatcttcacaaaaccc--atgccatgaagcaggtgcagtcattgctatca-tttccactt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24651614 325 - 73212453 AAAGCTGCATACTGAAGCAAATCGAGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAGCACAACTNCCTCCCTCTCCCTTCTGCTCCTTTGACACTCCNTTATTCANCCACGTCTCCTTGTTTCTTCATCCCACTTTGGTTTTATACAGTAAATaataataagacacaaatattgagtactttctaggtgccaatagtttccaggttcctagtgctttagggtacacg--------acctcatttcatcttcacaaaaccccatggccgtgaagcaggtgcagtcatcgctatcattttccactt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47876933 317 - 81552678 AAAGCTGCATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGTTCTGGAATTCCTCTTGTCTAGCACAACT-CCTCCCTCTCCCTTCTGCTCCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGATTTCATACAGTAAATaataataagacacaaatattgagtactttctaggtgccaatagtttccaggttcctagtgcttta-ggtacacg--------acctcatttcatcttcacaaaaccc--atgccatgaagcaggtgcaggcatcgctatca-tttccactt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52989691 316 + 80904711 AAAACTACATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAGCACAATT-CCTCCCTCTCCCTTCTGCTCCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGGTTCTATATAGTAAATaataataagacacaaatattgagtactttctaggtgccagtagtttccaggttcctagtgcttta-ggtacaca--------acctcatttcatcttcac-aaacgc--atgccttgaaccaggtgcagtcatcgctatca-tttccactt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52512155 316 + 80997621 AAAACTACATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAGCACAATT-CCTCCCTCTCCCTTCTGCTCCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGGTTCTATATAGTAAATaataataagacacaaatattgagtactttctaggtgccagtagtttccaggttcctagtgcttta-ggtacaca--------acctcatttcatcttcac-aaacgc--atgccttgaaccaggtgcagtcatcgctatca-tttccactt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47557717 317 + 74645514 aaaactgcATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGTTCTGGAATTCCTCTTGTCTAGCAcaact-cctccctctcccttctgctTCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCCTCATCCCACTTTGGTTctatatagtaaataataataagacaCAAATATTGAGTACTTTCTAGGTGCCAGTAGTTTCCAGGTTCCTAGTGCTTTA-GGTACACa--------acctcatttcatcttcacaaaacCC--ATGCCATGAACCAGGTGCAGTCATCACTGTCA-TTTCCACTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9824001 317 - 75148670 AAAACTGCATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCCATT----GGCTTTTGGACTCAGCTCTGGAATTCCTCTTGTCTAACACAACT-CCTCCCTCTCCCTTCTGCTCCTTTGACACTCC-TTATTCA-CCATGTCTCCTTGTTTCTTCATCCCACTTTGGTTCTATATAGTAAATaataataagacacaaatattgagtactttctaggtgccaatagtttccaggttcctagtgcttta-ggtacaca--------acctcatttcatcttcacaaaaccc--atgccatgaaccaggtgcagtcatcactgtca-tttccactt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112667330 315 + 159171411 AAAGCTGCATACTGAAGCAAATC-AGCTTAAGTTGGCTGACTAGCTATT----GGCTTTTAGACTCAGCTCGGGAATTCCTCCAGTCTAGCACAAC--CCTCCTTCTCCCTTCTGCTCCTTTGACACGCC-TTGCTCA-CCACATCTCCTTGCTTCTTCATCCCATTTTGGTTCCATATAGTACATaacaataagacacaaatgttgagtactttctagatgccaatactttgcgggttcctagtgcttta-ggtacagg--------acctcatttcatcttcacaaaactc--acgccatgaagcaggtgcagccatca-tgaca-tttccacct i calJac3.chr5 C 0 C 0 s canFam3.chr9 39243155 283 - 61074082 AAAGTTGCATGCTGAAGTAAGTC-A-CCTACAATGGCATAATAACCTTCTTTGGGCTTTTGCACTCAGTGCAGGAATTCCTCCAGGCTTGCATGACT-CCTCCCTCTCCTTTCTCCTC--TTGATACTCC-TTGCTCA-TCA-GTTTCC----TTCTGCACCCCATTTTGGTTCCATATACTCCATAATAATAGAATGCAGAtagtgaatacttgctatgtaccagagact-----gctcctagtgtttta-tgtatgtattttaaatccctcacttaatctccacaaaaccc--ac---------------------------cca-ctt------ i canFam3.chr9 C 0 C 0 e mm10.chr11 99414475 218 + 122082543 I a score=1524948.000000 s hg38.chr17_JH159146v1_alt 9258 429 + 278131 -------taagaaa-ctgaggaa--cacagaggttaaa--ttactt-gttattaagtagcagagccggaaattgaacccagtgtgatgttagaggccaggctcttaatcat-tGAATTTTGCCC---ATTTTCCTTTTAGGGTTTTGAATTTG-GCAACCCATGTTGAACCACCATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTTTGTTACTGACTTGTGGGTCTGAC-CTGCCCCAGT----GGGGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAAGGAGAGCAGAACCATGTTTGTTCACACCCTC-TG-TCTTTTCACATGTATTTGCCCTGTTGCCTTTCTCCCTCGTCTACCTGGATGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTT---CTTCCATGTGT s panTro4.chr17 66126120 429 - 82630442 -------taagaaa-ctgaggaa--cacagaggttaag--ttactt-gttattaagtagcagagccggaaattgaacccagtgtgatgttagaggccaggctcttaatcat-tGAATTTTGCCC---ATTTTCCTTTTAGGGTTTTGAATTTG-GCAACCCATGTTGAACCACCATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTTTGTTACTGACTTGTGGGTCTGAC-CTGCCCCAGT----GGAGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAAGGAGAGCAGAACGATGTTTGTTCACACCCTC-TG-TCTTTTCACATGTATTTGCCCTGTTGCCTTTTTCCCTCGTCTACCTGGATGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTT---CTTCCATGTGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24651939 442 - 73212453 -------taagaaacctgagggaaccacagaggtttaagtttacctggttattaagtagcagagccagaaattgaagccagtgtgatgttagaggccaggcttttaatcaTGTGAATTTTGCCC---ATTTTCCTTTTAGAGTTTTGAATTTGTGCAACCCATGTTGAACCACCATCTACTCAGGCTGAGACTTTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTCTGTTATTGACTTGTGGGTCTGAC-CTGCCCCAGT----GGAGACCCCACCCTGGGCCTGCACTGCTGTCAGCTAGGAGAAAGGAGAGCAGAACAATgtttgttcacaccctc-tg-tcttttcacatgtatttgccctgttgcctttctccctcgtctgcctggatgatttctttatgtagcatttcattgcccctcctggaaaattgttcacttctccttccatgtgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47877250 432 - 81552678 -------taagaaa-ctgaggaa--cacagaggttaag--ttactt-gttattaagtagcagagccagaaattgaatccagtgtgatgttagaggccaggctctgaatcat-tGAATTTTGCCC---ATTTTCCTTTTAGGGTTTTGAATTTG-GCAACCCATGTTGAACCACCATCTACTCAGGCTGAGAC-GTTGGCTGCCTTTTTCCCTAATG-CAGGACATGATTTCTGTTATTGACTTGTGGGTCTGAC-CTGCCCCAGT----GGAGACCCCACCCAGGGCCT-CACTGCTGCCAGCTAGGAAAAAGGAGAGCAGAACAATGTTTCTTCACACCCTC-TG-TCTTTTCACACGTATTTGCCCTGTTCCCTTTCTCCCTCGTCTGCCTGGATGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTTCTCCTTCCATGTGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52990007 431 + 80904711 -------taagaaa-ctgaggaa--cacagaggttaag--ttactt-gctattaagtagcagagccagaaattgaacccagtgtgatgttagaggccaggctcttaatcat-taAATTTTGCCT---ATTTTCC-TTTAGGGTTTTGAATTTG-GCAATGCATGTTGAACCACGATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTCTGTTACTGACTTGTGGGTCTGAC-CTGTCCCAGT----GGAGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAGGGAGAGCAGAACAATgtttgttcacaccctc-tg-tcttttcacatgtatttgccctgtttcctttctccctcgtctgcctggatgatttctttatgtagcatttcattgcccctcctggaaaattgttcacttctccttccatgcgt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52512471 431 + 80997621 -------taagaaa-ctgaggaa--cacagaggttaag--ttactt-gctattaagtagcagagccagaaattgaacccagtgtgatgttagaggccaggctcttaatcat-taAATTTTGCCC---ATTTTCC-TTTAGGGTTTTGAATTTG-GCAATGCATGTTGAACCACGATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTCTGTTACTGACTTGTGGGTCTGAC-CTGTCCCAGT----GGAGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAGGGAGAGCAGAACAATGTTTGTTCACACCCTC-TG-TCTTTTCACATGTATTTGCCCTGTTTCCTTTCTCCCTCGTCTGCCTGGATGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTTCTCCTTCCATGCGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47558034 433 + 74645514 -------TAAGAAA-CTGAGGAA--CACAGAGGTTGAG--TTACTT-GCTATTAAGTAGCAGAGCCAGAAATTGAACCCAGTATGATGTTAGAGGCCAGGCTCTTAATCAT-TAAATTTTGCCC---GTTTTCCTTTTAGGGTTTTGAATTTG-GCAACGCATGTTGAAGCACGATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATGTCAGAACATGATTTCTGTTATTGACTTGTGGGTCTGAC-CTATCCCAAT----GGAGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAGGGAGAGCAGAACAATGTTTGTTCACACCCTC-TG-TCTTTTCACACGTATTTGCCCTGTTTCCTTTCTCCCTTGTCTGCCTGGATGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTTCTTCTTCCATGCAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9824318 428 - 75148670 -------taagaaa-ctgaggaa--cacagaggttaag--ttactt-gctattaagtagcagagccagaaattgaacacagtgtgatgttagaggccaggctcttaatcat-taAATTTTGCCC---GTTTTCCTTTTAGGGTTTTGAATTTG-GCAACGCATGTTGAACCATGATCTACTCAGGCTGAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTCTGTTATTGACTTGTGGGTCTGAC-CTGTCCCAAT----GGAGACCCCACCCTGGGCCT-CACTGCTGCCAGCTAGGAGAAGGGAGAGCAGAACAATGTTTGTTCACACCCTC-TG-TTTTTTCACATGTATTTGCCCTGTTTCCTTTCTCCCTCGTCTGCC----TGATTTCTTTATGTAGCATTTCATTGCCCCTCCTGGAAAATTGTTCACTTCTCCTTCCATGTGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112667645 423 + 159171411 -------taaaaaa-ctgaggaa--cat---------g--ttactt-gttattaaatagcagagccagaaattgatcccagtgtaatgttagagcccaggcttttaatcat-taAATGTTGCCC---GTTTTCCTTTTATAATTTTGAATTGG-GCAACCCATGTTGAGCCACCGTCTGTTCAGTCTTAGAC-TTTGGCTGCCTTTTTCCCTAATG-CAGAACATGATTTCTGTTATTGACTTGTGGATCTGAC-CTGCCCCAGT----AATGACCCCACCCTGGGCCT-CACTGCTGCCAAATAGGGGAAGGGAGAGCAGAGCAATGTTTGCTCACACCCTC-TG-TCTTTTCACGTGTATTTGCCCTGTTCCCTTTCTCCCTCATCTGCCTGGATGATTCCTGTATGTAGTATTTTATTGCCTTTCCTGGAAAATTGTTCATTTCTCCCTCCATGTGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99414693 422 + 122082543 -------TAGGCGA-CAGATGCA--TGCAGAGA-GAAG--TTTCTC-AAGATtaagcaacagagttaggacttgaacccagtctgacttcagagtcctggttctACCTCAC-TCCGTCCTAACCCTTGTCTTCTTTCTGGAGCTTCGGATTCG-GCAACCGAGGCCAAACCACCGTCTACTCTGCTTTAGAC-TTTGGTTATCTTCTATCTCAACT-CAA---------CCTGCCATTGGCTTGTGGGTCTGACTCTGACTCACTCTCATAAAGCCCCACCCTAGGCCT-CAGCACTGCCAGGTAGGAGAAAGGAGGATGACACAGCAGAGGTCCCCACCCTTGCA-TCTTGTTACGTGTATACGCTTTAAT--CTTTCTCTCTCCAC-ACCTGTTCAATTTCTGAACGGTACA----GTTGCCCT--CCAATAACTTGATCCCTTCTTCCTCCATTCTT i mm10.chr11 I 218 C 0 s canFam3.chr9 39243438 384 - 61074082 caaagatcaggaaa-c--aggca--tacagcaagtagg--ttactt-gctatgaagtgacagagctaatatttgaacccagtctggcttcagagcccaggctcttaatcat-taAATCCTGCTC-TTATTTTCCATCTAGAGTTTTGAATATG-GCAATCCAGATTGAACCCCCATCTACTCAAGCCTAGAC-TTTGGCCACCTTCTGCCATAACC-GAGAACATGACATCTGTTATTGACTCATGGGTCTGAT-CCACCCCAAT----AGAAA-CCCAATCTGAGCCT-CACGGGTGCTGGATAGGAGAAAGGACA-TAAAACAATGTTTGTTTATACCCTTGTGTTTTTTTCACATGCGTTC-CTCTGTTCCCTTTTCCTTTTCTCTACCTGGTTGATCTCTTT------------------------------------------------------ i canFam3.chr9 C 0 C 0 a score=27679.000000 s hg38.chr17_JH159146v1_alt 9687 49 + 278131 CCTTCGAAGTTCTGTT---TGttttctttttt--ttgctttttttttttttgag-- s panTro4.chr17 66126549 51 - 82630442 CCTTCGAAGTTCTGTTCTtttttttttttttt--ttgctttttttttttt-gag-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24652381 35 - 73212453 cctttgaagttcttttctttatcttttttttt-------------------gag-- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47877682 33 - 81552678 CCTTCAAAGttcttttcttttctttttttt---------------------gag-- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52990438 31 + 80904711 ccttcgaaggtcttttcctttttgtttt-----------------------gag-- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52512902 31 + 80997621 CCTTCGAAGGTCttttcctttttgtttt-----------------------gag-- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47558467 31 + 74645514 CCTTCGAaggtcttttcctttttgtttg-----------------------gag-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9824746 31 - 75148670 CCTTCGAAGGTCttttcctttttgtttt-----------------------gag-- i chlSab2.chr16 C 0 C 0 s mm10.chr11 99415115 17 + 122082543 -CTTCAAAACTTCTGT-----------------------------------GA--- i mm10.chr11 C 0 C 0 s canFam3.chr9 39243822 35 - 61074082 -----------TCTTTCTTTttttttttaattaattgattt----------gagag i canFam3.chr9 C 0 I 278 e calJac3.chr5 112668068 0 + 159171411 C a score=255783.000000 s hg38.chr17_JH159146v1_alt 9736 106 + 278131 acagagtctcactctattgccatgctggagtgcagtggtgcaatcttggctcactgcaaccttcgcctcccgggttcaagtgattcgcctgcctcagcctcctgag s panTro4.chr17 66126600 106 - 82630442 acagagtctcactctattgccacgctggagtgcagtggtgcaatctcggctcactgcaaccttcgcctcccgggttcaagtgattcacctgcctcagcctcctgag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24652416 106 - 73212453 acagagtctcactctattgccacgctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcccaggttcaagtgattcttctgcctcagcctcctgag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47877715 106 - 81552678 acagagtctcactgtattgccacgctggagtgcagtggtgcaatctcggctcactacaacctccgcctcccgggttcaagtgattcgcctgcctcagcctcctgag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52990469 106 + 80904711 acagagtctcactctatcaccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagtgattctccttcctcagcctcctgag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52512933 106 + 80997621 acagagtctcactctatcaccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47558498 106 + 74645514 acagagtctcactctatcaccaggctggagtgcagtggtgcaatctcggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9824777 106 - 75148670 acagagtctcactctatcaccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcctgag i chlSab2.chr16 C 0 C 0 s mm10.chr11 99415132 54 + 122082543 ACCCCCTGTCAAGGTGTCACCATGCCTG---GCAGATGT-------------------------------------------------CTACCTCGACCCCTCAAG i mm10.chr11 C 0 I 134 e canFam3.chr9 39243857 278 - 61074082 I e calJac3.chr5 112668068 0 + 159171411 C a score=311726.000000 s hg38.chr17_JH159146v1_alt 9842 141 + 278131 tagctgggattacagccacctgcaactgcacccggctaatttttgtatttttagttaagatggggtttcaccatgttggccaggatggtcttgatctcttgagctcatgatctgccc---gcctcagcctcccaaagtgctggg s panTro4.chr17 66126706 141 - 82630442 tagctgggattacagccacctgcaactgcacccggctaatttttgtatttttagttaagatggggtttcaccatgttggccaggatggtcttgatctcttgagctcatgatctgccc---gcctcagcctcccaaagtgctggg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24652522 144 - 73212453 tagctgggattacagccacctgccattgcacctggctaatttttgtatttttagttgagatggggtttcaccatgttggccaggatggtcttgatctcttgagctcgtgatccacccccggcctcagcctcccaaagtgctggg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47877821 134 - 81552678 tagctgggattacagccacctgccact-------gctaatttttgtatttttagttgagatggggtttcaccatgttggccaggatggtcttgatctcttgagctcgtgatccgcct---gcctcagcctcccaaagtgctggg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52990575 140 + 80904711 tagctgggattgcagccacctgccactacatctggctaatttttgtatttttagttgagatggggtttcaccatgttggtgacgatggccttgatctcttgagcgcgggatccact----gcctcagcctcccaaagtactggg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52513039 140 + 80997621 tagctgggattgcagccacctgccactacacctggctaatttttgtatttttagttgagatggggtttcaccatgttggtgacgatggtcttgatctcttgagcgcgtgatccact----gcctcagcctcccaaagtactggg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47558604 140 + 74645514 tagctgggattgcagccacctgccactacacctggctaatttttgtatttttagttgagatggcgtttcaccatgttggtgaggatggtcttgatctcttgagcacgtgatccacc----gcctcagcctcccaaagtactggg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9824883 134 - 75148670 tagctgggattgcagccacctgccactgcacccggctaatttttgtatttttagttgagatggggtttcaccatgttggtgagga------tgatctcttgagcgcgtgatccact----gccccaacctcccaaagtactggg i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39243857 278 - 61074082 I e mm10.chr11 99415186 134 + 122082543 I e calJac3.chr5 112668068 0 + 159171411 C a score=66043.000000 s hg38.chr17_JH159146v1_alt 9983 26 + 278131 attacgggcgtg----agccatggtgccca s panTro4.chr17 66126847 26 - 82630442 attacgggcgtg----agtcatggtgccca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24652666 30 - 73212453 attacaggcgtgttttagccatggcgccca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47877955 26 - 81552678 actacaggtgtg----agccatggtgccca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52990715 26 + 80904711 gttacaggcgtg----agccatggtgccca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52513179 26 + 80997621 gttacaggcgtg----agccatggtgccca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47558744 26 + 74645514 gttacaggcgtg----agccatggtgccca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9825017 26 - 75148670 gttacaggcgtg----agccatggtgccca i chlSab2.chr16 C 0 C 0 s mm10.chr11 99415320 27 + 122082543 ATGACAGGCTTG---CTACCATGGGACCCA i mm10.chr11 I 134 C 0 e canFam3.chr9 39243857 278 - 61074082 I e calJac3.chr5 112668068 0 + 159171411 C a score=6152.000000 s hg38.chr17_JH159146v1_alt 10009 2 + 278131 gc s panTro4.chr17 66126873 2 - 82630442 gc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24652696 2 - 73212453 gc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47877981 2 - 81552678 gc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52990741 2 + 80904711 gc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52513205 2 + 80997621 gc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47558770 2 + 74645514 gc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9825043 2 - 75148670 gc i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39244135 2 - 61074082 gt i canFam3.chr9 I 278 C 0 e mm10.chr11 99415347 0 + 122082543 C e calJac3.chr5 112668068 0 + 159171411 C a score=1115171.000000 s hg38.chr17_JH159146v1_alt 10011 331 + 278131 cCTTTGAACTTCTATTCAA-CAGATCTCACTG-TATCAACATTCTTGGt--aggtgtttatc-tctgccctcaaccatgagctcctcaaggcaaggaccatatcat--attcatcactgagcctcc--aacctggcaca-ctgtaggggctc----agcgtttcttgactgcatgaatGATGGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAATATAATTTTGCTACAACCTTGATGAGCTTACATAAAAAGGCCAGAACTTCTAAAAGAATCTTCTTTTAGCTTAATCCTCAAACCCTGACATCTTCATCCCAG-TTTTATCTACattat s panTro4.chr17 66126875 331 - 82630442 cCTTTGAACTTCTATTCAA-CAGATCTCACTG-TATCAACATTCTTGGt--aggtgtttatc-tctgccctcaaccatgagctcctcaaggcaagtaccatatcat--attcatcactgagcctcc--aacctggcaca-ctgtaggggctc----agcgtttcttgactgcatgaaCAATGGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAATATAATTTTGCTACAACCTTGATGGGCTTACATAAAAAGGCCAGAACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAG-TTTTATCTACATTAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24652698 336 - 73212453 cctttgaacttccattcaaccagatctcactgttatcaccattcttggt--aggtgtttatcgtgtgtcctcaaccgtgagatcctcaaggcaaggaccatatcat--attcatcactgagcctcc--aatctggcacacctgtaggggctc----agcgtttcttgactgcatgaaCAATCGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAATATAATTTTGCTACAACCTTGATGGGCTTACATAAAAAGGCCAGAACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTATCTACATTAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47877983 332 - 81552678 cCTTTGAACTTCTATTAAA-CAGATCTCACTG-TATCACCATTCTTGGt--aggtgtttatc-tctgccctcaaccgtgagctcctcaaggcaaggaccatatcat--attcatcactgagcctcc--aatctggcaca-ctgtaggggctc----agcgtttcttgactgcatgaaCAATGGTGCCAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAATATAATTTTGCTAAAACCTTGATGTGCTTACATAAAAAGGCCAGAACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTAGCTACattat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52990743 332 + 80904711 cctttgaacttctattcaa-cagatctcactg-tatcaccattcctggt--agatgtttatc-tctgccctcaaccatgagctcctcaaggcaaggaccatatcat--gttcatcactgagtctcc--agtctggcaca-ctgtaagggctc----agcgtttcctgactgcatgaaAGATGGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAGTATAATTTTGCTACAACCTTGATGGGTTTACATAAAAAGGCCAGCACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTATCTACattat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52513207 332 + 80997621 cCTTTGAACTTCTATTCAA-CAGATCTCActg-tatcaccattcctggt--agatgtttatc-tgtgccctcaaccatgagctcctcaaggcaaggaccatatcat--gttcatcactgagtctcc--agtctggcaca-ctgtaagggctc----agcgtttcctgactgcatgaaAGATGGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAGTATAATTTTGCTACAACCTTGATGGGTTTACATAAAAAGGCCAGCACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTATCTACattat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47558772 331 + 74645514 ccttTGAACTTCTATTCAA-CAGATCTCACTG-TATCACCATTCCTGGT--AGATGTTTATC-TCTGCCCTCAACCATGAGCTCCTCAAGGCAAAGACCATGTCAT--ATTCATCACTGAGTCTCC--AGTCTGGCACA-CTGTAAGGGCTC----AGCGTTTCTTGACTGCATGAAAGATGGTGCTAGAAAATGAACAGGACAATTCTCAACTGCTGTAGTAGACAGTATAATTTTGGTA-AACCTTGATGGGTTTACATAAAAAGGCCAGCACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTATctacattat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9825045 332 - 75148670 cCTTTGAACTTCTATTCAA-CAGATATCActg-tatcaccattcctggt--agatgtttatc-tctgccctcaaccatgagctcctcaaggcaaggaccatatcat--attcatcactgagtctcc--agtctggcaca-ctgtaagggctc----agcgtttcttgactgcatgaaAGATGGTGCTAGAAAATGAACAGGACAACTCTCAACTGCTGTAGTAGACAGTGTAATTTTGCTATAACCTTGATGGGTTTACATAAAAAGGCCAGAACTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCTTCATCCCAGTTTTTATCTACattat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112668068 325 + 159171411 CCTTTGAACTTCTATTCAA-CCAATCTCACTG-TA-AACCATTCCTGGt--agatgtttatc-tctgtcctcaaccatg-gctcctcaaggcaagaaccatatctt--gttcatcactgagcctct--aaactggcaca-ttgtcagggccc----agcatttcttgactgcatggaAGATGGTGCTAGAACTTGAATAGGACAACTCTCAACTGCTGTAGTGGACAATTTAATTTCACTACAGCCTTGATGGGCTTACATAAAAAGGAAGGAAGTTCTAAAAGAATCTTCTTTTAACTTAATCCTCAAACCCTGACATCCTCATCCCAGTTTTCAGCTAC----- i calJac3.chr5 C 0 C 0 s mm10.chr11 99415347 212 + 122082543 -------------------------------------------CATGGTCCAGATGGCTATG-ACTGAC---------------------ACACAGCCCATAGCATCAGGTCATCATTAAGTGTATGAAATTAAGTGAA----TAGGAACCC----A-------TTGACTGTATGAAAGAAGGCCCCAGAAAATG----GAACAAGTGTTCTCTCCTATAATGGAAAATATAAAATTCCATTAACCTCCGAGAGGAT--------------GAACCCTTAAAATAATCTTAATTT-------------------------CTAACCTCAGTTTTT----------- i mm10.chr11 C 0 C 0 s canFam3.chr9 39244137 322 - 61074082 ccttctaacttctatgtgg-c----ctctctg-tatcaccattcccact--aaatgtctatc-tctgccctaaattgtgagctccactaggcaaggaccctatcgt--attcatctttgagtctcc--attcttacata-ctgtaaggattccataagtgtttcttgactgaatcaaAGAAGGTCTTAGAAAATGAACAGGACAACTGTTATCC-CCATAGTAGACAATGTAA-TTTGCTGTAACCTTAATGGGATGATGTAAAAAGGGCAGAACTTCTAAAAGAATCTTCTT--------AATCTCCAACCTTGACATTTTCATCTCAGTGTTTATCTACTTTAT i canFam3.chr9 C 0 C 0 a score=455918.000000 s hg38.chr17_JH159146v1_alt 10342 157 + 278131 c---attattatcattattaatgttgtgtagagat--gggggtctctctatgttgtccaggctggtcttgaactccgggcctcaagcaa-tcat-cttgcctctcagcctcccaaagtgctgggattataggtgtgagtcattactcccagcctctattttatt s panTro4.chr17 66127206 157 - 82630442 C---ATTATTATCATTATTAATGttttgtagagat--gggggtctctctatgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cttgcctctcagcctcccaaagtgctgggattataggtgtgaatcattactcccagccTCTATTTTATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24653034 159 - 73212453 C---ATTATTATTATTATTAATGttttgtagagat--gggggtctctctatgttgtccaggctggtctcgaactcctggcctcaagcaattcatccttgcctctcagcctcccaaagtgctgggattataggtgtgagtcgttactcccagccTCTATTTTATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47878315 159 - 81552678 c---attattattattattaatgttttgtagagattggggggtctctctatgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cttgcctctcagcctcccaaagtgctgggattataggtgtgagtcattactcccagcctctattttatt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52991075 157 + 80904711 c---attattattattattaatgttttgtagagat--aggggtctctttatgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cctgcctctcagtctcccaaaatgctgggattataggtgtgagtcattactcccagcctctattttatt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52513539 160 + 80997621 cattattattattattattaatgttttgtagagat--aggggtctctttatgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cctgcctctcagtctcccaaaatgctgggattataggtgtgagtcattactcccagcctctattttatt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47559103 157 + 74645514 c---attattattattattaatgttttgtagagat--aggggtctctctatgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cctgcctctcagtctcccaaaatgctgggattataggtgtgagtcattACTCCCAgcctctattttatt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9825377 157 - 75148670 c---attattattattattaatgttttgtagagat--gggggtctctctgtgttgtccaggctggtcttgaactcctggcctcaagcaa-tcat-cctgcctctcagtctcccaaaatgctgggattataggtgtgagtcattactcccagcctctattttatt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112668393 157 + 159171411 ----ATTATTATTATTATTAGTGttttgtagagat-ggggggtctctctatgttgtctaggctggtcctgaactcctggcctcaagcaa-tcat-cctgcctctcagcctcccaaagtgctgggattataggtgcgagtcatcattcccagccTCTATTTTATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99415559 37 + 122082543 ----TTTTTTTTT---------------------T--------------------------TTGGTCT---------------GAGTGC-TTAT----------------------GTGC--------------------------------------TTTGTT i mm10.chr11 C 0 C 0 e canFam3.chr9 39244459 0 - 61074082 C a score=3115945.000000 s hg38.chr17_JH159146v1_alt 10499 815 + 278131 agtagtattTCAAAAACTTCTCTCTATGCTCTTGACATTCTTGTTGGAATC-----AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAATTAACTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCGGGTTACCAGAAGAAAGTTCGTTAAAAGACTACTCCAGGTCCAGAAGGATATAAGGTAATTTTGATTTGTTACAAAGACCAACATGACCAAAATGACTTGT-GACTGAATATTGTTTCAGAAGGGCAAAAAGGATTCAATGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGGGATTGAAGTAATACAGCATGTTACTCTGAAAGGAATAATTTCTACTTGTAAATTTCTTGTTCCTAAGGAACCAATCATGGGGCAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTTGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGG-CAAGAGTTAGTGTT--TCAAATATTAATCCAACACTGGTTGTT---TAATGTAGGCTTCTAAATTAAGCATTGGTTGATACAATCCATCTAATT-AAACTTTCAAAAGTAAATTT----TACTTCTCAA--A-AATGTGTTTTAGCC---------AATGACAATGAAATGTATTCAGTGTTGCCTTGTACATATATGAAAAC--------------------------------------TTTTTTTAAGAAAACATTTCAAAGGTGGTTATGGTGA--------TCATAATACCTTGCAGCAGAGTA--GGT-TTTTTCCCTTCTGCT-TTG s panTro4.chr17 66127363 816 - 82630442 AGTAGCATTTCAAAAACTTCTCTCTATGCTCTTGACATTCTTGTTGGAATC-----AAGGCATACATTTCACATTACCACCATTCATCTTTTATTACAATTAACTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCGGGTTACCAGAAGAAAGTTCATTAAAAGATTACTCCAGGTCCAGAAGGACATAAGGTAATTTTGATTTGTTACAAAGACCAACATGACCAAAATGACTTGT-GACTGAATATTGTTTCAGAAGGGCAAAAAGGATTCAATGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGGGATTGAAGTAATACAGCATGTTACTCTGAAAGGAATAATTTCTATTTGTAAATTTCTTGTTCCTAAGGAACCAATCATGGGGCAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTTGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGG-CAAGAGTTAGTGTT--TCAAATATTAATCCAACACTGGTTGTT---TAATGTAGGCTTCTAAATTAAGCATTGGTTGATACAATCCATCTAATT-AAACTTTCAAAAGTAAATTT----TACTTCTCAA--A-AATGTGTTTTATCC---------AATGACAATGAAATGTATTCAGTGTTGCCTTGTACATATATGAAAAC--------------------------------------TTTTTTTAAGAAAACATTTCAAAGGTGGTTATGGTGA--------TCATAATACCTTGCAGCAGAGTA--GGT-TTTTTCCCTCCTGGTATTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24653193 822 - 73212453 AGTAGTATTTCAAAAACTTCTCTCTATGCTCTTGACATTCTTGTTGGAGTCAAT--AAGGCATATATTTCATACTATTACCATTCATCTTTTATTACAATTAACTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCAGGTTACCAGAAGAAAGTTCATTAAAAGACTACTCCAGGTCCAGAAAGATATAAGGTAATTTTGATTTGTTACAAAGACCAACATGATCAAAATGACTTGT-GACTGAATATTGTTTCAGAAGGGGAAAAAGGATTCAATGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATCGAAGTAATACAGCATGTTACTCTGAAAGGAATAATTTCTATTTGTAAATTTCTTCTTCCTAAGGAACCAAACATGGGGCAGGTCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTTGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGGAAAAGGGTTAGTGTT--TCAAATATTAATCCAACACTGGTTGTT---TAATGTAGGCTTCTAAATTAAGCATTGGTTGATACAATCCATCTAATT-AAACTTTCAAAAGTAAATTT----TACTTCTCAA--A-AATGTGTTTTATCC---------AATAAAAATGAAATGTATTCAGTGTTGCCTTGTACATATATGAAAAC--------------------------------------TTTTTTTAAGAAAACATTTCAAAGGTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGTACGGTT-TTTTTCCCACCTGAGATTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47878474 819 - 81552678 agtagtattTCAAAAACTTCTCTCTATGCTCTTGACATTCTTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAATTAACTCTATTAAAACAATACTACTTGATTAAAGTTCTATGATTAAA-AAATATTCCAGGTTACCAGAAGAAAGTTCATTAAAAGACTACTCCAGATCCAGAAAGATATAAGGTAATTTTGATTTGTTACAAAGACCAACATGACCAAAATGACTTGT-GACTGAATATTGTTTCAGAAGGGCAAAAAGGATTCAATGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATTGAAGTAATACAGCATGTTACTCTGAAAGGAATAATTTCTATTTGTAAATTTCTTGTTCCTAAGGAACCAATCATGGGGCAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTTGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGA-CAAACGTTAGTGTT--TCAAATATTAATCCAACACTGGTTGTT---TAATGTAGGCTTCTAAATTAAGCATTGGTTGATACAATTCATCTAATT-AAACTTTCAAAAGTAAATTT----TACTTCTCAA--A-AATATGTTTTATCC---------AACGAAAATTAAATGTATTCAGTGTTGCCTTGTACATATATGAAAAC--------------------------------------TTTTTTTAAGAAAACATTTCAAAGGTGATTATGGTGA--------TCATAATACCTTGCAGCAGAGTA--GGT-TTTTTCCCTCCTGGGATTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52991232 821 + 80904711 attagtattTCAAAAACTTCTCTCTATGCTCTTAACATTATTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATTTTTTATTACAATTAATTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCAGATTACCAGAAGAAAGTTCATTAAAAGACTACTCCAGGTCCAGAAAGATATAAGGTAATTTTGATTTGTTATAAAGACCAACGTGACCAACATGGCTTGT-GACTGCATATTGTTTCAGAAGGGCAAAAAGGATTCAGTGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATTGAACTAATACACCATGTTACTCTGAAAGGAATGATTTCTGTTTGTAAATTTCTTGTTCCTAAGGAACCAATCATGGGGTAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTCGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGG-CAAAAGTTAGTGTT--TCAAATATTAATCCAGCATTAGTTGTT---TAATGCAGGTTTCTAAATTAAGCATTGGTTGATACAATCCATATAATT-AAACTTTCAAAAGTAAATTT----TACTTCTTAA--A-AATGTGTTTTATCC---------AATGAAAATGAAATGTATTCAGTGTTGCCTTGTACACATATGAAAACA-------------------------------------TTTTTTTAAGAAAACATTTCAAAGTTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGTA--GGTTTTTTTCCCTCCTGGGATTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52513699 821 + 80997621 attagtattTCAAAAACTTCTCTCTATGCTCTTAACATTATTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAATTAATTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCAGATTACCAGAAGAAAGTTCATTAAAAGACTACTCCAGGTCCAGAAAGATATAAGGTAATTTTGATTTGTTATAAAGACCAACGTGACCAACATGGCTTGT-GACTGCATATTGTTTCAGAAGGGCAAAAAGGATTCAGTGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATTGAACTAATACACCATGTTACTCTGAAAGGAATGATTTCTGTTTGTAAATTTCTTGTTCCTAAGGAACCAATCATGGGGTAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTCGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGG-CAAAAGTTAGTGTT--TCAAATATTAATCCAGCATTAGTTGTT---TAATGCAGGTTTCTAAATTAAGCATTGGTTGATACAATCCATATAATT-AAACTTTCAAAAGTAAATTT----TACTTCTTAA--A-AATGTGTTTTATCC---------AATGAAAATGAAATGTATTCAGTGTTGCCTTGTACACATATGAAAACA-------------------------------------TTTTTTTAAGAAAACATTTCAAAGTTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGTA--GGTTTTTTTCCCTCCTGGGATTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47559260 821 + 74645514 attagtatttcAAAAACTTCTCTCTATGCTCTTAACATTATTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAATTAATTCTATTAAAACAATACTACTTGATTAAAGCTCTatgattaaa-aaatattccaGATTACCAGAAGAAAGTTCATTAAAAGACCACTCCAGGTCCAGAAAGATACAAGgtaattttgatttgttttaaagaCCAACGTGACCAACATGACTTGT-GATTGCATATTGTTTCAGAAGGGCAAAAAGGATTCAGTGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATTGAACTAATACACCATGTTACTCTGAAAGGAATGATTTCTGTTTGTAAATTTCTTGTTCCTAAGGAACCAATCGTGGGGTAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTCGGGTCTaaagataaaaatggaat---------------------aaGGGGG-CAAAAGTTAGTGTT--TCAAATATTAATCCAGCATTACTTGTT---TAATGCAGGTTTCTAAATTAAGCATTGGTTGATACAATCCATATAATT-AAACtttcaaaagtaaattt----tacttcttaa--a-aatgtgttttatcc---------aatgaaaatgaaatgtattcAGTGTTGCCTTGTAcacatatgaaaaca-------------------------------------tttttttaggaAAACATTTCAAAGTTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGta--ggttttttttcctcctgggattg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9825534 821 - 75148670 atttatattTCAAAAACTTCTCTCTATGCTCTTGACATTATTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAATTAATTCTATTAAAACAATACTACTTGATTAAAGCTCTATGATTAAA-AAATATTCCAGATTACCAGAAGGAAGTTCATTAAAAGACTACTCCAGGTCCAGAAAGATATAAGGTAATTTTGATTTGTTATAAAGACCAACGTGACCAACATGACTTGT-GACTTTATATTGTTTCAGAAGGGCAAAAAGGATTCGGTGTGAATAGGGAATCCAAAGAAAATGGAACAGACAAAAATAGAGATTGAACTAATACACCATGTTACTCTGAAAGGAATGATTTCTGTTTGTAAATTTCTTGTTCCTAAGGAACCAATCATAGGGTAGATCTTGTGAAATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCGGGTTTTGGTCGGGTCTAAAGATAAAAATGGAAT---------------------AAGGGGG-CAAAAGTTAATGTT--TCAAATATTAATCCAGCATTGGTTGTT---TAATGCAGGTTTCTAAATTAAGCATTGGTTGATACAATCCGTATAATT-AAACTTTCAAAAGCAAATTT----TACTTCTTAA--A-AATGTGTTTCATCC---------AATGAAAATGAAATGTATTCAGTGTTGCCTTGTACACATATGAAAACA-------------------------------------TTTTTTTAAGAAAACATTTCAAAGGTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGTA--GGTATTTTCCCTTCCTGGGATTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112668550 811 + 159171411 ATTAGTATTTTGAAAACTTCTTTCTATGCCCTTGACATTACTGTTGGAATCAAG--AAGGCATACATTTCACATTATTACCATTCATCTTTTATTACAGTTAACTCTATTCAAACACCACCACTTGATTAAAGCTCTGTGATTAAA-AAATATTCCAGGTTACCAGAAGAAAGTTCATTAAAAGACTACTCCAGGTCCAGAAAGATATAAGGTAATTTTGATTTGTTATAGAGATCAACATCATCAAAATGACTTGT-GACTGGATATTGGTTCAGAAGGGCAAAAAGCACTCAGTGTGAATAGGGAGTCCAAAGAAAATGAAACAGACACAAACAGGGATTGAACTAATACAGCATCTTACTCTGAAAGGAGTAATTTCTATTTGTAAATTTCTTGTTCCTAAGGAGCCAATCATGGGGCAGATCTTGTGACATTTTACATTAGTTCTTCAATTTCCTGAACTTGAGATGAGACCACCTCACCATTCACCATCTCCTGCACAACTGTCTTGATTTTTCTGGTTTTGGTTGGGTCTAAAGAT-AAAATGGAAC---------------------AAGGGGG-CAAAAGTTAGTGTT--TCAGAGATTAATCCAACATTGGTTGTT---TAATGTAGGCTTCTAAATTAAGCATCAGTTGATACAGTCCATCTAATT-AAACTTTCAAAAATAACTTT----TACTTCTTAA--A-AATGTGTTTTATCC---------AACGAAAATGAAAT-TATTCAGTGTTGCCTTGTACAGCCATGAAAACA-------------------------------------TT-------AAAAAAATTTCAAAGGTGGTTATGGTGA--------TCATAATACCTTGTAGCAGAGCA--GGT-TTTTTCCCTCCTGGGATTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99415596 835 + 122082543 ATTAATATCTTAAAAGCTTCTGTCTATGCCCTTGACAGTATTGTTGAAATCAAGGAGAGGCACACACTTCACTTCATTGCCATTAATCTTTAATTAAAGTTAGTGTTGTTAAACCCATACGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAA-AAACTTAGTGGAAAGACTTCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGAGCCACAGAGACTTGTAAATTGGATATTGTTTCAGAAATGCTAACAAGACCCAACCTGCATAGAGAATCCAAGGAAAAGGAAACTGGCCAAAACAGGTGCTGAATTCATATAGCGCA------CGGAAGCAGTAACTCCTGGCTGGAAACTTCGCATCCCAGAGGAGCC---------------CGTGTGAGGCCTTACATCTCTTCTTCAAGTTCCTGAACCTGGGATGAGACCACTTCGCCATTCACTATCTCCTGCACGACTGTCTTGATTTTTCGAGTTTTATTTGGGTCTAAAGGTAAAAAACAAACACAAACAAACAAACAACACAAAAGAGGA-TGATGATTATTACTAAGCAGTTATCAACCCAAGGTTTATTCTT-------------GTTCAACTTAAGCTT------------TTCGTCAAATTCAGACTTTTGCAAGTGACTCC------ATTCCAAACCA-AGTGAGTTTTACTT---------AGTGGAAATGAAATTTATTCAGGACTGTCTTGTGCACAAATCAAAAGGCTCAACGTCTCCCTCCATCTCTCTGTTCCTCTAGttctttcttt-------cagttcag----ggtcttgctaaatattagcccaggatagcctggaactcacta------tcccccCCCCCctctctct i mm10.chr11 C 0 C 0 s canFam3.chr9 39244459 805 - 61074082 ATTAGTGTTTTACAAACCTCTCTCTATGCTCTTGACA---TTGTTGGAATTAAG--AAGGTACATATTTCATATTATTACCATTCATCTTTTAT-----TTAACTTTATTAAAACAATAC---TTGATCAAAATCATGTGATTAAA-ATATGTTCCAGGTCACCAAAAGAAAGCTTATTAGAAGGCTACTCTAGGTCCAGAAAGATGTAAAGCAATTTTGGTTTGTTCTAAAGACCAACATGGCCACAGTGATTTGT-AATT-------------GAAGAGCAATAGGGACTCAAAGTGAATAGGGAGTCCAAGGAAAATGAAACAGACAAACGTAGA-ATTGAGTTAATATGGTATCTTACTCTGAAAGGGACAATTTCTGCTTGTAAATTTCCTATCCCTAAGGAACCAGTCATGGGGCAGATCTTGTGAAATTTTACATTAGTTC------TTCCTGAACTTGAGATGAGACCACTTCACCGTTCACCACTTCCTGCACAATTGTCTTGATTCTCCGGGATTTGGTTGGGTCTAAAGATAAAAATGGAAT---------------------AAAGGGG-CAAGAGTAAGTGTT--TCATACATTCATCCAAAGTTGGTTGTTGTTTAGCTTAAGCTT-TAAATTAGATATTGGCAGATATAATCCACCAAATTTAAACTTTCAAAAGTGACTTTGCATTCATTCTAAA--ACAATGCACTTTTTGCATTGTTGAAAATGAAAGTGAAATGTATTCAGTGTCATATTATGTACAAGTGAAAATA-------------------------------------TTTCTCCTTTTAAAAATTTAAAAAGTGGCTATGATGC--------TCATAACACTTCTTTGTAGAATA--GAT-TGTTTTCCTTCTGGG-TTG i canFam3.chr9 C 0 C 0 a score=108133.000000 s hg38.chr17_JH159146v1_alt 11314 50 + 278131 CCATtt-tttttattttttaattttaat--------tttaattttcttaaagacagggt s panTro4.chr17 66128179 50 - 82630442 CCATtt-tttttattttttaattttaat--------tttaattttcttaaagacagggt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24654015 50 - 73212453 CCAAtt-tttttattttttaattttaat--------tttaattttcttagagacacggt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47879293 49 - 81552678 CCAAtt-ttttaattttttaattttaat--------tttaa-tttattaaagacagggc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52992053 42 + 80904711 CCA---------Attttttaatttttat--------tttaattttcttagagacagggt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52514520 42 + 80997621 CCA---------Attttttaatttttat--------tttaattttcttagagacagggt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47560081 42 + 74645514 cca---------atttttaaatttttat--------tttaattttcttagagacagggt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9826355 42 - 75148670 CCA---------Attttttaatttttat--------tttaattttcttagagacaaggt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112669361 51 + 159171411 CCAATTCTTTTTATTTTGTAATTTTAAT--------TTAAAttttcttagagacagggt i calJac3.chr5 C 0 C 0 s mm10.chr11 99416431 59 + 122082543 ttctctctctctctcttttaatttttattaaaaaaatttaGCCCTCCAAGAGATGGGAT i mm10.chr11 C 0 I 226 e canFam3.chr9 39245264 0 - 61074082 C a score=740578.000000 s hg38.chr17_JH159146v1_alt 11364 275 + 278131 ctggctctgttgcccaggt-aggaatgcagtggcatgatcatag-ctcactataacctctaactcccgggctcaagcggtcctcctgcctcagcctccagagtagccgagatca-caggtatacaccaccacacccagctattttttttctt-aagttttttg--tagagatggggtctcgctatttgccca-ggtgggtcacgaactcctggcctcaagcgatcct-cccacctcaggtt-cccgaagctatgaggttacaggcatgagccaccatgcccagg s panTro4.chr17 66128229 275 - 82630442 ctggctctgttgcccaggt-aggaatgcagtggcatgatcatag-ctcactataacctctaactcccgggctcaagcggtcctcctgcctcagcctccagagtagccgagatca-caggtatacaccaccacacccagctattttttttctt-aagttttttg--tagagatggggtctcgctatttgccca-ggtgggtcacgaactcctggcctcaagcgatcct-cccacctcaggtt-cctgaagctatgaggttacaggcatgagccaccatgcccagg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24654065 284 - 73212453 ctggctctgttgcgtaggtcgggaatgcagtggcatgatcatagtttccctataacctctaactcctgggctcaagcggtcctcctgcctcagcctccagagtagccgagatcaccaggcatacaccaccacacccagctatttttttcntcgaagttttttggttagagatggggtctcgctattgccccagggtgggtcacgaactcctggcgtcaagtgatcctccccacctcagcttccccgaagctatgagattacaggcatgagccaccgtgcccagG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47879342 275 - 81552678 ctggctctgttgcccaggt-cggaatgcagtggcatgatcatag-ctcactataacctctaactcctgggctcaagcggtcctcctgcctcagcctccagagtagccaagatca-caggtatacaccaccacacccagctattttttttctt-aagttttttg--tagagatggggtctcactatttgccca-ggtgggccaccaactcctggcctcaagcgatcct-cccacctcaggtt-cccgaagctatgaggttacaggcataagccaccatgcccagg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52992095 270 + 80904711 ctggctctgttgcccaggt-tggaatgcagtggcatgatcatag-ctcactataacctctaactcctgagctcaaggggtcctcctgcctcagcctccagagtagccgagatca-caggcatacaccaccatgcccagctattttttt-ctt-aagttttttg--tagagatggggtctcactgtt-gccca-ggtgggtcacgaactcctggcctcaagtgatcct-cccaccttagttt-cccaaagctatgagattacaggcatgagccaccgtgccc--- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52514562 251 + 80997621 ctggctctgttgcccaggt-tggaatgcagtggcatgatcatag-ctcactataacctctaactcctgagctcaaggggt-------------------aagtagccgagatca-caggcatacaccaccatgcccagctattttttt-ctt-aagttttttg--tagagatggggtctcactgtt-gccca-ggtgggtcacgaactcctggcctcaagtgatcct-cccaccttagttt-cccaaagctatgagattacaggcatgagccaccgtgccc--- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47560123 270 + 74645514 ctggctctgttgcccaggt-tggaatgcagtggcatgatcatag-ctcactataacctctaactcctgagctcaaggggtcctcctgcctcagcctccaaagtagccgAGATCA-CAgtcatacaccaccatgcccagctattttttt-ctt-aagttttttg--tagagatggggtctcactgtt-gccca-ggtgggtcacgaactcctggcctcaagtgatcct-cccaccttagttt-cCCAAAGctatgagattacaggcatgagtcaccgtgccc--- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9826397 270 - 75148670 ctggctctgttgcccaggt-cggaatgcagtggcatgatcatag-ctcactctaacctctaactcctgagctcaagtggtcctcctgcctcagcctccagagtagccaagatca-caggcatacaccaccatgcccagctattttttt-ctt-aagttttttg--tagagatggggtctcactgtt-gccca-ggtgggtcacgaactcctggcctcaagtgatcct-ccaaccttagttt-cccaaagctatgagattacaggcatgagtcaccgtgccc--- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112669412 260 + 159171411 cttgctctgttgcccaggt-gagagtgcagtggcatgatcatag-ctcactataacctctaactcctggtctcaagtggtcctcctgcctcagcctccagagtagttgagatca-taggcatacaccaacacatccagctattttttt-ctt-aa-ttttttg-------------tctccctatt-gccca-agtgggtcatgaactcctggccttaaatgatcct-cccacttcagttt-cccagagctatgagttttcaggcatgagcca-cATGTCCAGG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39245264 0 - 61074082 C e mm10.chr11 99416490 226 + 122082543 I a score=988.000000 s hg38.chr17_JH159146v1_alt 11639 3 + 278131 ccC s panTro4.chr17 66128504 3 - 82630442 ccC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24654349 3 - 73212453 CTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47879617 3 - 81552678 ccC i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112669672 3 + 159171411 CCC i calJac3.chr5 C 0 C 0 s mm10.chr11 99416716 3 + 122082543 TTG i mm10.chr11 I 226 C 0 e canFam3.chr9 39245264 0 - 61074082 C e chlSab2.chr16 9826667 0 - 75148670 C e papAnu2.chr16 47560393 0 + 74645514 C e macFas5.chr16 52514813 0 + 80997621 C e rheMac3.chr16 52992365 0 + 80904711 C a score=1113388.000000 s hg38.chr17_JH159146v1_alt 11642 285 + 278131 CCAAAAGTTTTAATATGGTAT-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGAATATAAATATGCTTTAAATTAAAATTAATAATAATGCAGTAGTCAATGAGGTCTTACAGGTTTTG-CA-TTAATAAATGTGATTCCGACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC s panTro4.chr17 66128507 285 - 82630442 CCAAAAGTTTTAATATGGTAT-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGAATATAAATATGCtttaaattaaaattaataataatGCAGTATTCAATGAGACCTTACAGGTTTTG-CA-TTAATAAATGTGATTCCGACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24654352 286 - 73212453 CCACAAGTTTTAATACAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGAATATAAATGTGCtttaaattaaaattaataataatGCAGTATTCAATGAGATCTTACAGGTTTTG-CA-TTAATAAATGTGATTCTGACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAaggaga----------tgaac i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47879620 285 - 81552678 CCGAAAGTTTTAATACGGTAT-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGaatataaatatactttaaattaaaattaataataaTGCAGTATTCAATGAGATCTTACAGGTTTTG-CA-GTAATAAATGTGATTCTGACCTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCGTCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52992365 285 + 80904711 CCAAAAGTTTTAATATAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGAATATAAATATGCtttaaattaaaattaataataatGCAATATTCAATGAGATCTTACAGGTTTTG-CA-TTAATAAATGTGATTCTGACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52514813 285 + 80997621 CCAAAAGTTTTAATATAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGCTCAGAATATAAATATGCTTTAAATTAAAATTAATAATAATGCAATATTCAATGAGATCTTACAGGTTTTG-CA-TTAATAAATGTGATTCTGACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47560393 285 + 74645514 ccAAAAGTTTTAATATAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATGTTTTTCCTTGGTTCAGAATATAAATAtgctttaaattaaaattaataataatgcaatATTCAATGAGATCTTACAGGTTTTg-ca-ttaataaatgtgattctgACTTATTCTAAGTGATTC-TAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACtgtaa--------------------------------gaaaacaaaggaga----------tg-aC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9826667 285 - 75148670 CCAAAAGTTTTAATACAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATGGTTTTCGTTGGCTCAGAATGTAAATATGCTTTAAATTAAAATGAATAATAATGCAATATTCAATGAGATCTTACAGGTTTTG-CA-TTAATAAATGTGATTCTGACTTATTCTAAGTGATTC-CAGGGTTTCTGCATACCTTTAGAGGAATCAGTTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCCTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------TG-AC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112669675 279 + 159171411 CCAAAAGTTTTAATACAGTAC-AGACTACTCATTTTG-TGCAGGAATGCATAAATATTTTTCCTTGGCTCAGaatataaatatac------ttaaaattaataataatGCCGTGTTCGTTGAGATCTTACAGGTTTTG-CA-CTAATAAATGTGTTTCTGACTTATTCTAGGTGATTC-TAGGGTTTCTGCTTACCTTTAGAGGAATCAATTGACTGTGCTTGTGATTTGGAGTCTGTCACAAATAAACTTTCGTCCAAACCATCACTGTAA--------------------------------GAAAACAAAGGAGA----------AA-AC i calJac3.chr5 C 0 C 0 s mm10.chr11 99416719 312 + 122082543 CTGAGAGTTTTAATATACCACTCCACTGCCCAGTGTG-TTTGA----GCAGAGATATGTCCCCT--GCTCAGAACACAAATCTATTTTAAGTT---ATTTACACT----CAACGTTTAGTGAGATCTTACAGTTTAGT-CATTTCACGAATGAGAGTCTGCCTTATTTTTAATGATTC-TCGTGTC----CATACCTTTAGAGGAATCGACTGATGGTGTCTGCGGTTTGGAGACAGAAAGGGATGAGCTCTCGTCAAAACCGTCGCTGTAAAGAGAAGGAGAGCTGTGCTCACGTGATTGTTGGATAAGTAAGGAGACCCTGCTGCTTG-AG i mm10.chr11 C 0 C 0 s canFam3.chr9 39245264 284 - 61074082 CCAGAAATGTTCATACAGTAC-AATCCACTCATTTTTCTGCAGGAATACATAAATATTTTTCCTTGGCCCAGAATGCaaatatattttaaatt---attaataataCTGCAATATTCAA-GAGATCTTATCATTTTAGTCA-TTAATAAGTGTGATTCTGACTTATTCTCAGTGATTCTTAGGGAGTCTGCATACCTTTAGAGGAATCAATCGACTGCGTTTGAGATTTGGATTCTGTCACATATAAAGTCTCATCAAAGCCATCGCTGTAA--------------------------------AAAAACAAGGGGGA----------TG-AT i canFam3.chr9 C 0 I 187 a score=51688.000000 s hg38.chr17_JH159146v1_alt 11927 15 + 278131 CTCAAA-AAGTGAAAC s panTro4.chr17 66128792 15 - 82630442 CTCAAA-AAGTGAAGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24654638 16 - 73212453 ctcaaagaagtgaagc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47879905 15 - 81552678 CTCAAA-AAGCGAAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52992650 15 + 80904711 CTCAAA-AAGTGAATC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52515098 15 + 80997621 CTCAAA-AAGTGAAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47560678 15 + 74645514 CTCAAA-AAGTGAAGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9826952 15 - 75148670 CTCAAA-AAGTGAAGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112669954 15 + 159171411 ATCAAA-AAGTGAAGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99417031 16 + 122082543 CTTAAACATGAGAGAC i mm10.chr11 C 0 I 101 s canFam3.chr9 39245735 15 - 61074082 CTCTCA-AAGTGAAGC i canFam3.chr9 I 187 C 0 a score=143684.000000 s hg38.chr17_JH159146v1_alt 11942 42 + 278131 AACCT---------GGCTTTTAATGGAAG--ATCTGGTCTGAGAAATTAGATT s panTro4.chr17 66128807 42 - 82630442 AACCT---------GGCTTTTAATGGAAG--ATCTGGTCTGAGAAATTAGATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24654654 42 - 73212453 aacct---------gggttttaatggaag--atctggtctgagaaatcagatt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47879920 39 - 81552678 AACCT---------GGCTTCTAAT---AG--ATCTGGTCTCAGAAATTAGATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52992665 42 + 80904711 AACCT---------GGCTTTTAATGGAAG--AGTTGGTCTCAGAAATTCGATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52515113 42 + 80997621 AACCT---------GGCTTTTAATGGAAG--AGTTGGTCTCAGAAATTCGATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47560693 42 + 74645514 AACCT---------GGCTTTTAATTGAAG--AGCTGGTCTCAGAAATTCGATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9826967 42 - 75148670 AACCT---------GGCTTTTAATGGAAG--AGCTGGTCTCAGAAATTAGATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112669969 42 + 159171411 AACCT---------GGCTTTTAACAGAAG--ATCTGGTCTCAGAAATTAAATT i calJac3.chr5 C 0 I 419 s mm10.chr11 99417148 53 + 122082543 AACCTCCTACAATGGGCTCTGAGGGGGAGCAGCTTGGTCTCAGAAATCAGCTG i mm10.chr11 I 101 C 0 s canFam3.chr9 39245750 42 - 61074082 AAACT---------GGCAATTAATGGAAG--ATCTGATCTCAGAACTTTGATT i canFam3.chr9 C 0 C 0 a score=964775.000000 s hg38.chr17_JH159146v1_alt 11984 305 + 278131 TCCCAATTTGTAGGCCTGAGTTCTTCCAACTAGTGCAGACTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGTG--GCTA-CT-----ATGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAATTGAGTAAGTGACTTTTATAGTACAGG-GAGTACTCATTTACAAACTGTTTCTGACCGTGGTGCCTTTGTTctttgcagcattttatgaa-t---tatcaagtaagataatgggtgaaaacactttgcaaagtgtagagc-atttagt-aaATCCCAGGCATATCT-TTACTAGACTTG----TGTTTG- s panTro4.chr17 66128849 305 - 82630442 TCCCAATTTGTAGGCCTGAGTTCTTCCAACTAGTGCAGACTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGTG--GCTA-CT-----ATGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAATTGAGTAAGTGACTTTTATAGTACAGG-GAGTACTCATGTACAAACTGTTTCTGACCGTGGTGCCTTTGTTctttgcagcattttatgaa-t---tatcaagtaagataatgggtgaaaacactttgcaaagtgtagagc-atttagt-aaATCCCAGGCATATCT-TTACTAGACTTG----TGTTTG- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24654696 304 - 73212453 tcccaatttgtaggcctgagttcttccaactagtgcagactctgATCACTTTTGGAAAGCTTGTTA------GAAT--------AGATGGTTCAGGTG--GCTA-CT-----ATGTGTC---CTTATCATCAGGTCTTTAATATCAGAAATTGAGTGAGTGACTTTTATAGTACAGG-GAGTACTCATTTACAAACTGTTTCTGACCGTGGtgcctttgtccattgcagcattttatgaatt---tatcaagtaagacaatgggtgaaaacactttgcaaagtgtagagCAATTTAGT-AAATCCCAGGCATATCT-TTACTAGACTTG----TGTTTG- i ponAbe2.chr17 C 0 I 1 s nomLeu3.chr19 47879959 309 - 81552678 TCCCAATTTGTACGCCTGAGTTCTTCCAACTAGTGCAGACTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGTG--GCTA-CT-----ATGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAATTGAGTGAGTGACTTTTATAGTACAGG-GAGTACTCATTTAGAAACTGTTTCTGACCGTGGTGCCTTTGTTCATTGcagcattttatgaa-t---tatcaagtaagataatgggtgaaaacactttgcaaagtgtagagc-atttcgt-aaatCCCAGGCATATCT-TTACTAGACTTGGgtttgtttg- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52992707 296 + 80904711 TCCCAATTTGTAGGCCTGAGTTCTTCCAACTAGTGCAGCCTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGAG--GCTA-CT-----AGGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAAT----TGAGTGATTTTTGTAGTATAGG-GAATACTAATTTACAAACTGTTTCTGACAGTAGTGCCTTTGTTCATTGcagcattttatgaa-t---taccaagtaagataatgggtgaaaacactttgcaaagtgtagagC-ATTTAGT-AAATCCCAGGCATATCT-TTACTAGACTTT---------G- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52515155 296 + 80997621 TCCCAATTTGTAGGCCTGAGTTCTTCCAACTAGTGCAGCCTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGAG--GCTA-CT-----AGGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAAT----TGAGTGACTTTTGTAGTATAAG-GAATACTAATTTACAAACTGTTTCTGACAGTAGTGCCTTTGTTCATTGCAGCATTTTATGAA-T---TaccaagtaagataatgggtgaaaacactttgcaaagtgtagagC-ATTTAGT-AAATCCCAGGCATATCT-TTACTAGACTTT---------G- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47560735 292 + 74645514 TCCCAATTTGTAGGCCTGAGTTCTTCCAACTAGTGCAGCCTCTGATCACTTTCGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGAG--GCTA-CT-----AGGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAAT----TGAGTGACTTTTGTAGTATAGG-GAATACTGATTTACAAACTGTTTCTGACAGTAGTGCctttgttcattgcagcattttaTGAA-T---TACC----AAGATAATGGGTGAAAACACTTTGCAAAGTGTAGAGC-ATTTAGT-AAATCCCAGGCATATCT-TTACTagacttt---------g- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9827009 300 - 75148670 TCCCAATTTGTAGGTCTGAGTTCTTCCAACTGGTGCAGCCTCTGATCACTTTTGGAAAGCTTGTTA------GAGT--------AGGTGGTTCAGGTG--GCTA-CT-----AGGTGTCCTTCTTATCATCAGGTCTTTGATATCAGAAATTGAGTGAGTGACTTTTGTAGTACAGG-GAATACTGATTTACAAACCGTTTCTGACAGTAGTGCCTTTGTTCATTGCAGCATTTTATGAA-T---TACCAAGTAAGATAATGGGTGAAAACACTTTGCAAAGTGCAGAGC-ATTTAGT-AAATCCCAGGCATATCT-TTACTAGACTTT---------G- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112670430 282 + 159171411 tcTCAATTTGTAGGCCTGGGTTCTTCCAGCTAGTCCAGACTCTGGTCACTTTTGGAAAGCTTGTTA------GAGT--------AGGAGGTTCAGATG--GCTA-CT-----ATGCGTCCTCCTTATCATCAGGTCTTTGATATTAGAAATTGAGTGAGTGACTTTTGTAGTACAAA-GAGTACTCATTTACAATCTGCTTCTGACC-TGGTGCCTTTGTTCACTGTAGCATTTTATGAA-T---TATCAAGTAAGATAATGGGTGAAAACACTTTGCAAA---------------GT-AAAACCCAGATATATCT-TTACTAGACT------------- i calJac3.chr5 I 419 C 0 s mm10.chr11 99417201 254 + 122082543 TCTTAATTTACCATCTGGGGCTCTTCCTTCCAGATTAGGCTGCTATTGTTGATGACGGGTTTGCTACCGTGGGGCT--------GGGTGATCCGGATGCTGCTATCG-----ATGTGTTATCCCTAGCATCA-------------AGAGAT---------GGTTCTTCTAGAACATGTAAGTACTCATTTACAA------------------------------TG-AGCATTTTATTAA-TTTGTATCAAGTGAGATAGTGGCTGAATACATTCT-----------ATT-ATCTAGT-AAATTCTAGGCATGCAT-TTTCTAGATTTG---TTGTTT-- i mm10.chr11 C 0 I 343 s canFam3.chr9 39245792 305 - 61074082 TCCTGATTTAGAGCCCTGGGGTCTTCCCACTAGTCTAGGCTGCTGCTGCTTTTGGAAAGTTCACTG------CAGTAGGTTGTGAGGTGATTCAGGTG--GCTG-TTGTGTGAGGTGTCATTCTCAGCATGGGGGCATTGATACTAGGACTCTAATGGGTGACTTCTCTAGTGTCAG----------TTTGCAG--TATGCCTGTCTGTGGTGTCATTATTCATCCCAGCATTTTATGAA-T---TGTCAAGCGAGATAAAGGGTGACGCCACTTTGGAAAGTGTAGACC-ATTAAATGAAATCCAGGGTATGCTTGTTAGGAGATGTG---------GT i canFam3.chr9 C 0 C 0 a score=5460269.000000 s hg38.chr17_JH159146v1_alt 12289 1475 + 278131 TTTGTTTG-CTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGCCCACTCTTGGTCAGCCCCTGAAGGTGTTTACAGCCTCCGT-----TGTCTGCTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGCTCTGCGTCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAAGGAGTCCTCCAGGGATTTCTTCTGCACGTGGGAGGGAAATGGCATAGAAATAACGATGGAGGGGACCGAAAAGAGGA-GGGTAGCCAAC-----G-G-CTAATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTACGTC-TGTTTGCGCACG--AGCCTACCAT-GGCGAGC-TGGGACTGT-AGCTCGATCTCCAGGTTCTGAAAGGCGCGACGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTAC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGG-CTCGAGCGCTGAGCTCGTTC-GCAGGCCTTT-CT---GTGAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCATTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGGGACAGCATGTGAGAGAGAGGGGCAcaggggtccattgtgactttcgtgggccctggatacttttgtcctcttgggccccttcct--------------------aca-cacacacacacacacacacacacacacacacacac--------------ttaaaaattctatcttatgact--gttggt------ataaagacaaatatattaatgtaatacattaaaac----tttttt-----aacctcaaaattcatatttttcttctgatattacaagaact------------taagacatattcatgggtccctgaaattaccacagaccctgggagcagtgcctgctgtgcctaatgggtaagttggctctgCTTCTTGAGGGACCACGACC-----TTCACGTGAAAG---GAGGCCTGGCGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACCGAGGGCTGCAGACAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATCGAAAATCT-AGTAGAAAC-TT---------CCTATTGCCAGCA--------TC-----------CCTTCCCTA-CCTAGCCTCCAATATGCACCATGGCACCTCAGAGTTTTC-TG-GTGTGCATTATGCTAAGTATAACCAGTTTCTCTGACATATAAA-ACAT---TATATA---TTATTGGTAGACTTTTGTTT--TAACTTTTAAAATA-CTCAG--TCTTTTT s panTro4.chr17 66129154 1489 - 82630442 TTTGTTTG-CTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGCCCACTCTTGGTCAGCCCCTGAAGGTGTTTACAGCCTCCGT-----TGTCTGCTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGCTCTGCGTCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAAGGAGTCCTCCAGGGATTTCTTCTGCACGTGGGAGGGAAATGGCATAGAAATAACGATGGAGGGGACCGAAAAGAGGA-GGGTAGCCAAC-----G-G-CTGATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTACGTC-TGTTTGCGCACG--AGCCTACCAT-GGCGAGC-TGGGACTGT-AGCTCGATCTCCAGGTTCTGAAAGGCGCGACGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTAC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGG-CTCGAGCGCTGAGCTCGCTC-GCAGGCCTTT-CT---GTGAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCATTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGGGACAGCATGTGAGAGAGAGGGGCAcaggggtccattgtgactttcgtgggccctggatacttttgtcctcttgggccccttcct--------------------aca-cacacacacacacacacacacacacacacacacacacacacacacacacttaaaaattctatcttatgact--gttggt------ataaagacaaatatattaatgtaatacattaaaac----tttttt-----aacctcaaaattcatatttttcttctgatattacaagaact------------taagacatattcatgggtccctgaaattaccacagacgctgggagcagtgcctgctgtgcctaatgggtaagttggctctgCTTCTTGAGGGACCACGACC-----TTTACGTGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACCGAGGGCTGCAGACAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCT-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CCTTCCCTA-CCTAGCCTCCAATATGCACCATGGCACATCAGAGTTTTC-TG-GTGTGCATTATGCTAAGTATAACCAGTTTCTCTGACATATAAA-ACAT---TATATA---TTATTGGTAGACTTTTGTTT--TAACTTTTAAAATA-CTCAG--TTTTTAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24655001 1509 - 73212453 TTTGTTTGTCTTTTCTGTCNAACTAAAA-ACCCCCATTCCAT-----------------TCTATTT------------TCTGCTGCCCACTCTTGGTTAGCCCCTGGAGGTGTTTACAGCCTCCGT-----TGTCTGCTCACCCTTGGGCCTCTCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGTTCTGCGTCCGCGCGCACCTGGAGCAGCTGTGCCTCTAGGTTGCTGATGAGTTGCTGCACCTGGGACAGCTGCGCGCAGTAATCCGCCCTCGGCTTCGGCCAACGAGTCCTCCAGGGATTTCTTCTGCACGTGGGAGGGAAATGGTATAGAAATAACGATGGAGGGGACCAAAAAGAGGA-GGGTAGCCAAC----AG-G-CTGATG--TAATTTGGATGCAGTA---TTTTCTTTGCAAGATCCAAAGGATGCT---TG-CGTCTGCGCACG--AGCCTACCATGGGCGAGCTTGGGACTGCAAGCTCGATTTCCAGGTTCTGAAAGGTGCGACGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTCCGGGAGCTCCCCGCTCTGCAACAGCAAAGGA-CAGCCAGGGGGACTTGAGCGCTGAGCTCGCTCGGCAGGGCCTT-TTCTGGCGAATGTATCAAAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCAGGGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGGTTTTCATACTGCGCCCGCATATCGTTGAGGAGCCCTGGTGAGGTCCACTCCCGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGGGACAGCATGTGAGAGAGAGGGGCAcaggggtccattgtgactttcgtgggccctggatacttttgtcctcctgggccccttcct--------------------aca-cacacacacacacacacacacacacacacacacac----acacacactcttaaaaattctatcttatgact--gttggt------ataaagacaaatatattaatgtaatatattaaaac----tttttt-----aacctaaaaattcatatttttcttctgattttacaagaact------------taagacatagtcatgggtccctgaaattaccacagaccctgggagcagtgcctgctgtgcctaatgggtaagttggctctgCTTCTTCAGGGACCACGGCC-----TTTACATGAAAG---GAGGCCTGGCGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACCGAGGGCTGCAGACAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCTAAGTAGAAACTTT---------CCTATTGCCAGCG--------TC-----------CCTTCCCTA-CCTAGCCTCCAATATGCACCATGACACATCAGAGTTTTCTTG-GTGTGCACTATGCTAAGTATAACCAGTTTCTCTGACATACAAAGACAT---TATATACTTTTATTGGTAGAC-----TTT--TAACTTTTAAAATAGCTCAG-TTTTTTTT i ponAbe2.chr17 I 1 C 0 s nomLeu3.chr19 47880268 1492 - 81552678 tttgtttg-cttttctgtC-AACTGAAA---TCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCACTCTTGGTCAGCCCCTGAAGGTGTTTGCAGCCTCCGT-----TGTCTGCTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCTAACTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGCTCTGCGTCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAACGAGTCTTCCAGGGATTTCTTCTGCACGTGGGAGGGAAATGGTATAGAAATAATGATGGAAGGGACCGAAAAGAGGA-GGGTAGCCAAC-----G-G-CTAATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTGCGTC-TGTTCGCGCACG--AGCCTACCAT-GGCGAGC-TGGGACTGT-AGCTCGATCTCCAGGTTCTGAAAGGCGCGACGCAGGTCGGTGATCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTCC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGA-CTTGAGCGCTAAGCTCGCTC-GCAGGCCTTT-CT---GCGAATGTATCAAAGGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGGGACAGCATGTGAGAGAGAGGGGCAcaggggtccattgtgactttagtgggccctggatacttttgtcctcctgggccccttcct--------------------aca-cacacacacacacacacacacacacacacacacacacacacactctctcttaaaaattctatcttatgact--gttggc------ataaatacaaatatattaatgtaatatattaaaac----tttttt-----aacctaaaaattcatatttttcttctgattttacaagaact------------taagacatattcatgggtccctgaaattaccacagaccctgggagcagtgcctgctgtgcctaatgggtaagttggctctACTTCTTGAGGGACCACGGCC-----TTTACATGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACCTGCAGCTGCCAAACCGAGGGCTGCAGACAGCACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCC-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CCTTCCCTA-CCTAGCCTCCAATATGCACGGTGACACATCAGAGTTTTC-TG-GTGTGCATTATGCTAAGTATAACTAGTTTCTCTGACATATAAA-ACAT---TATATA---TTATTGGTAGACTTTTGTTT--TAACTTTTAAAATA-CTCAGTTTTTTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52993003 1501 + 80904711 TTTGTTTG-CTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCACTCTTGGTCAGCCCCTAAAGGTGTTTACAGCCTTCGT-----TGTCTGCTCACCCCTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGGCGCTGGTGGTCCACGTTCTGGCGCTCTGCATCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAACGAGTCTTCCAGGGATTTCTTCTGCACGCGGGAGGGAAATGGTATAGAAATAACGATGGAGGGGACCGAAAAGAGGA-GGGCAGTCAAC-----G-G-CTAATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTGCGTC-TGTTTGCTCAGG--AGCGTACCAT-GGCGAGC-TGGGACTGC-AGCTCGATCTCCAGGTTCTGAACGGCGCGTCGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTCC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGA-CTCGAGCGCTGAGCTCGCTT-GCAGGCCTTT-CT---GCGAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCACCTGGGCCGCCCACCCGGAAGCTTTGGAGTTCCTGGGGACAGCACGTGAGAGAGAGGGGCAcaggggtccattgtgactttcgtgggccctggatacttttatcctcctgggccccttcctacacacacacacacacacacaca-cacacacacacacacacacacacacacacacacacacacacacacacacttaaaaattctattttatgact--gttggt------ataa--------atattaatgtaatattttaaaac----tttttt-----aacctaaaaattcatatttttcttctgattttacaggaact------------taagacatattaatgggtccctgaaattacctcagaccctgggagcagtgcctgctgttcctaatgggtaagttggctctACTTCTTGAGGGGCCATGGCC-----TTTACATGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACAGAGGGCTGCA-GCAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCT-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CTTTCCTTG-CCTAGCCTCCAATATGCACCGTGACATGTCAGAGTTTTC-----TGTGTGTTATGCTAAGTATAACCAGTTTCTCAAACACATATA-ACAT---TATATA---TTATTGGTAGACTTTTGTTCCTTAACTTTTAAAATA-CTCAGCTTTTTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52515451 1445 + 80997621 TTTGTTTG-CTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCACTCTTGGTCAGCCCCTAAAGGTGTTTGCAGCCTTCGT-----TGTCTGCTCACCCCTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGGCGCTGGTGGTCCACGTTCTGGCGCTCTGCATCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAACGAGTCTTCCAGGGATTTCTTCTGCACGCGGGAGGGAAATGGTATAGAAATAACGATGGAGGGGACCGAAAAGAGGA-GGGCAGTCAAC-----G-G-CTAATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTGCGTC-TGTTTGCTCACG--AGCGTACCAT-GGCGAGC-TGGGACTGC-AGCTCGATCTCCAGGTTCTGAACGGCGCGTCGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTCC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGA-CTCGAGCGCTGAGCTCGCTT-GCAGGCCTTT-CT---GCGAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCACCTGGGCCGCCCACCCGGAAGCTTTGGAGTTCCTGGGGACAGCACGTGAGAGAGAGGGGCAcaggggtccattgtgactttcgtgggccctggatacttttatcctcctgggccccttcct---------------------------------------------------------acacacacacacacacttaaaaattctattttatgact--gttggt------ataa--------atattaatgtaatattttaaaac----tttttt-----aacctaaaaattcatatttttcttctgattttacaggaact------------taagacatattaatgggtccctgaaattacctcagaccctgggagcagtgcctgctgttcctaatgggtaagttggctctgCTTCTTGAGGGGCCATGGCC-----TTTACATGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACAGAGGGCTGCA-GCAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCT-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CCTTCCTTG-CCTAGCCTCCAATATGCACCGTGACATGTCAGAGTTTTC-----TGTGTGTTATGCTAAGTATAACCAGTTTCTCAAACACATATA-ACAT---TATATA---TTATTGGTAGACTTTTGTTCCTTAACTTTTAAAATA-CTCAGCTTTTTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47561027 1475 + 74645514 tttgtttg-cttttctgtc-aaCTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCACTCTTGGTCAGCCCCTAAAGCTGTTTGCAGCCTTCGT-----TGTCTACTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGCTCTGCATCCGCGCGCACCTGCAGCAGCTGTGCCTCCAGGTTGCtgatgagctgctgcacctgggaCAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAACGAGTCTTCCAGAGATTTCTTCTGCACGCGGGAGGGAAATGGTATAGAAATAACGATGGAGGGGACAGAAAAGAGGA-GGGCAGTTAAC-----G-G-CTAATG--TAATTTGGATGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTGCGTC-TGTTTGCGTACG--AGCCTACCAT-GGcgagc-tgggactgc-agctcgATCTCCAGGTTCTGAACGGCGCGACGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTAATCTCCTTCC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGC-CTCGAGCGCTGAGCTCGCTC-GCAGGCCTTT-CT---GCGAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGGGACAGCACATGAGAGAGAGGGGCACAGGGGTCCATTGTGACTTTCGTGGGCCCTGGATACTTTTATCCTCCTGGGCCCCttcct--------------------aca-cacacacgcacgcacgcatgcacgcacacacacacacacacacacgcacttaaaaattctattttatgacT--GTTggtataaagataa--------atattaatgtaatattttaaaac----tttttt-----aacctaaaaattcttatttttcttctgattttacagGAACT------------TAAGACATATTAATGGGTCCCTGAAATTACCTCAGACGCTGGGAGCAGTGCCTGCTGTTCCTAATGGGTAAGTTGGCTCTGCTTCTTGAGGGGTCGTGGCC-----TTTACATGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACCTACAGCTGCCAAACAGAGGGCTGCAGGCAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATGT-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CCTTCCTTG-CCTAGCCTCCAATATGCAC--------ATCAGAGTTTTC-----TCTGTGTTATGCTAAGTATAACCAGTTTCTCTAaaacatata-atat---tatata---ttattggtagacttttgttc-----cttttaaaata-ctcagttttttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9827309 1459 - 75148670 TTTGTTTG-CTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCACTCTTGGTCAGCCCCTAAAGGTGTTTGCAGCCTTCTT-----TGTCTGCTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTCAGCAGCCGCTGGTGGTCCACGTTCTGGCGCTCTGCGTCCGCGCGCACCTGGAGCAGCTGTGCCTCCAGGTTGCTGATGAGCTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCGGCCAACGAGTCTTCCAGGGATTTCTTCTGCACGCGGGAGAGAAATGGTATAGAAATAACGATGGAGGGGACCGAAAAGAGGA-GGTCAGTCAAC-----G-G-CTAATG--TAATTTGGATGCAGCG---TTTTCTTTGGAAG-TCCAAAGGATGCTGCGTC-TGTTTGCTCACG--AGCGTACCAT-GGCGAGC-TGGGACTGC-AGCTCGATCTCCAGGTTCTGAACGGCGCGACGCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCGGTGTTTGTGCTAATCTCCTTCC-GGAGCTCCCCGCTCTGCAACAGCAAA-GA-CAGCCAGGGGA-CTCGAGCGCTAAGCTAGCTT-GCGGGCCTTT-CT---GCAAATGTATC-AAAGCCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGCGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCACCTGGGCCGCCCACCCGGAAGCTTTGGAGTTCCTGGGGACAGCACGTGAGAGAGAGGGGCAcaggggtccattgtgacttttgtgggccctggatacttttattctcctgggccccttcct-------------------------------------------acacacacacacacacacacacacacgcacttaaaaattctattttatgact--gttggt------ataa--------atattaatgtaatattttaaaac----tttttt-----aacctaaaaattcatatttttcttctgattttacagtaact------------taagacatattaatgggtccctgaaattacctcagaccctgggagcagtgcctgctgttcctaatgggtaagctgggtctgCTTCTTGAGGGGCCATGGCC-----TTTACATGAAAG---GAGGCCTGGTGTACA---CTCACTGGGGTTTTCACGTACAGCTGCCAAACTGAGGGCTGCA-GCAGTACCTGGGCTTGCACGCTGTTT-GTGCCACAATCATTGAAAATCT-AGTAGAAAC-TT---------CCTATTGCCAGCG--------TC-----------CCTTCCTTG-CCTAGCCTCCAATATCCACTGTGACATGTCAGAGTTTTC-----TGTGTGTTATGCTAAGTATAACCAGTTTCTCTAACACATATA-ACAT---TATATA---TTATTGGTAGACTTTTGTTCCTTAACTTTTAAAATA-CTCAGCTTTTTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112670712 1489 + 159171411 TTTGTTTG-TTTTTCTGTC-AACTAAAA---CCCCATTCC-T-----------------TCTA-TT------------TCTGCTGTCCATGATTGGTCAGCCCCTGAAGGTGTTTGTAGCCTCCGT-----TATCTGCTCACCCTTGGGCCTCCCCGTCCAGCAGGCGGCGGTAGGTCTCAATCTCCAGCTCCAGGCGGGCCTTGACATTAAGCAGCCGCTGGTGGTCCATGTTCTGGCGCTCTGCATCCGCGCGAACCTGCAGCAGCTGAGCCTCCAAGTTGCTGATGAGTTGCTGCACCTGGGACAGCTGCGCGCAGTAAT-CGCCCTCGGCTTCAGCCAACGAGTCCTCCAGGGATTTCTTCTGCACGTGGGAGGGAAACGGTAAAGACATAACGATGGAAGGGACGGAAAAGAGAA-CGGCAGCCAAG-----GAG-CTAATG--TAATTTGGACGCAGCA---TTTTCTTTGGAAG-TCCAAAGGATGCTGCATCTTTTTTGCCCACG--AGCCTACCGT-GGCGAGC-TGGGACTGC-AGCTCGATCTCCAGATTCTGAACGGCGCGACGCAGGTCGGTGACCTCACTCTTGCTGGACTGAAGCTGCTCGGTGTTGGTGCTGATCTCCTTCC-TGAGCTCACCGCTCTGCAACAGTAAA-GA-GAACCA-GGGA-CTCCAGAGCCACGCTCGCTC-GCAGGCCTTC-CA---GTGAATGTATC-AAAGGCTTTG----TTGTTTGTGTTACCTTTTCAATGAACCA-GGCTTCAGCGTCCTTCCGATTCTGCTCAGCGATGG-TTTCATACTGTGCCCGCATATCGTTGAGGAG-CCTGGTGAGGTCCACTCCGGGGGCAGCGTCCATTTCTACGCTGACCTCGCCTGGGCCGCCCACCCGGAAGCTTTGGAGCTCCTGGAGGCAGCACGTGAGAGAGAGGGGCAcaggggcccattgtgac-ttcgtgggccctggatacatttgtcctcctgcacctcttcct--------------------ac----tacacacacacacacacacacacacacacacacacgcatacacactcctaaaaattctattttatgact--gttggt------ataaaggcaaatatattaatacaatatattaaaac----tttttt-----aacctgaaaattcctatttttcttctgattttacaagaacc------------taagacatattcatgtatctctgaaattaccacacaccctggaagctgtgcctgctgtgtctaatggaaaagttggccctgCTTCTTGAGGGGCCGTAGCC-----TTTACATGAAGG---GAGGCCTGATATGTA---CTTACTGGGGTTTTCACCTACAGCTGCCAAACAGAGGGCTGCAGACAGTACCCAGGCTTGCACACTGTTT-GTGCCACAGTCATTGAAAACCT-AGTAGAAAC-TT---------CCTATTGCCGGCA--------TC-----------CCTTCCTTA-CCCAGCCTCCAATATGCACTTTGAGACATCAGAGTTCTC-TGTGCGTGCATTATGCTAAGTATAACCAATTTCTCCAACATATATA-ACAT---TATATA---TTATTGGTCGACTTTTGTTCTTTAACTTTTAAAGTA-TTCAGttttttt-- i calJac3.chr5 C 0 I 314 s mm10.chr11 99417798 1452 + 122082543 TTTGTTCC-CTGTTTAGTC-GACTACAG---CCCTCTTCT-CCCACTGCAGAAAAAAAATCTG-CA------------TCAGGTGTCCACAGTCTTTCAGCCCCT-ACGATGTTTCCAATCTT-AT-----TGTCTGCTCACCCTTGGCTGTCCCCCTCCAGCAGCCGGCGGTAGGTCTCAATCTCCATCTCCAGGCGAGCCTTGACGCCCAGCAGCCGCTGGTGGTCCGCATTCTGGCGCTCCGCGTCAGCCCGCACCTGTTGGAGTTGCTCCTCCAGGCTGCCGATCAGCTGCTGCACCTGAGACAGTTGGCAGCAGTACC-CACCCTCGGTTTCAGCCAGCGAGCCTTCCAGGGACGACTTCTGCAAATGGGAG---------ATAGACAGAATTGTCTGGGGATCAGAGAACAAGATGGGCAGCCCAT-----G-GTCCAGCA--TACGGTGGGTGCAACATCTTTTTTTTTGGAAG-T-TAAAGGATGCATCATC-TCTCTCTGCATGTCACGCTACCAT-GGCGAGC-TGGGACTGG-AGTTCAATCTCTAGGTTCTGCACCATGCGCTTCAGGTCGGTGACCTCGCTCTTGCTGGACTGAAGCTGCTCCGTGTTGCTGCTGATCTCTTTTC-GGAGCTCTCTGCTCTGCAACAGCAAA-G--TAGGTGGATGG-GGTGAGCTCTGCGCTGGCTC-AAAGGGCTTT-CT---GGGAATGCATC-AAATCTCGCG----------GTGTTACCTTTTCAAGAAACCA-GGCCTCTGCATCTTTCCGATTTTGCTCAGCCATGG-CTTCATACTGGGCTCTCATTTCATTGAGGAC-CTTGGTGAGATCCACTCCAGGGGCCGCGTCCATTTCTACATTGACCTCACCTGGACCACCTGCCTGGAAACTTTGGAGTTCCTAGAGACAGCAATGGAGAGAGAAAGACAcaggagtaca-tgtggctagtgagtcccccaggtacgtttgccttcttgggtctcttcat--------------------gca-tgataata-----------------------------------------ataaaaaatatatttt-tgagtgagttggt------ataaaggcaaa-atattagcgcaaggcatccacac----atttttctttaagcttgaaaa--cctgtttctctcataat-taaaaaaaactaaaaccaaaaaccaagatattttctcaggtttcttgagtgatcaggggctccacgttctgtgcctGTGGTT------------GCTGGCTCTGCTTCTAGAACATCCACTTCCTATAGTTTACAGAAAGGAAAGAGACCTGGTGTGCA------------GATTGCTGCTACAG-------AGCTAGTGCCACAAGTGGCACCTGGGGTCATACACTATTTCACACCATAGTCATTGAGAACCC-AACAGAAAG-TTTCTTAGAAGCCCATTGCCAGTGGTCGTTCTTC-----------CTGTCCATGCCCCGGCCTCTGATACACAC--------ATCAGATCTCCA-----TATGTCTTATATTGGTTACA-----CTTCTCTAACATATGTG-GCTGGTATATGTG---TCAGCTGTAGACTTTTGTTT--TCATTTTTGAAACA-CTCCGTATTTAA-- i mm10.chr11 I 343 I 2 s canFam3.chr9 39246097 1464 - 61074082 ---------ATTTTCCATC-AATGAAAGAACCCTCCTTCC-T-----------------TCTG-TTGCCCCAAGCGCATCAGGCGGCCCCTGCTGGTCAGCCACTGAAGTTATTTGCATCCTACGTGAACCTGTCTATTCACCCTTGGGCCTCGCCGTCCAGGAGGCGGCGGTAGGTCTCGATCTCCATCTCCAGGCGGGCCTTGGCGTTCAGCAGCCGCTGGTGGTCGGCGTTCTGGCGCTCGGTGTCGGCGCGCACCTGGAGCAGCTGCTCCTCCAGGCTGCCGATGAGCTGCTGCACCTGGGACAGCTGGCCGCAGTAGT-CGCCCTCCACTTCGGCCAGCGAGGCCTCCAGGGATTTCTTCTGCACGTGGGAGGGAGATGGCACAGATACAACAGTGGAGGGGATGGCAATGAGGA-AGGCGGCCAGCCAGTGG-C-CTTATAACTAACGTGGGTGCCACG---TTTTCTTTGGAAG-TCGAAATGATGCCGCGCG-TG------CGCG---CCCTACCGT-GGCCAGC-TGGGACTGG-AGCTCGATCTCCAGGTTCTGAAGTGCGCGCCTCAGGTCGGTGACCTCGCTCTTGCTGGACTGCAGCTGCTCCGTGTTGGTGCTGATCTCCTTCC-GCAGCTCCCCGCTCTGCCGCGGCAAA-GAGGGGCGAAAGGA-CGTGAGCGCGTGCTGCGCCC-GCAGGTCTTTCCT---GCCTACGTGTC-AAAGCCTTTTGTTTTTGCTTGTGGTACCTTTTCAATGAACCA-GGCCTCTGCGTCCTTACGGTTCTGCTCGGCAATGG-CTTCGTACTGCGCCCTCATGTTGTTGAGGAG-CCTGGTGAGGTCCACGGCTGGAGCAGCGTCCATTTCCACACTGATCTCCCCTGGGCCGCCTGCCCGGAAGCTTTGGAGCTCCTGGGAACAGCGAGCGAGAGAGTGAGGGAGAGGCGCCC--------------GGCCCCTTGATAACTCTGg-----tgggcgtcttaca--------------------gcagaaaagaca-----------------------------------------ttaagtgttatatgttatgaccacgttgct------gtac-------tgttataatacaacatattaaaacttcttttttt-----aatctacaaattcatacttttcttttgat-ttaaaactact------------gaaggcattgccttgggtccctaaacttaccatggaccctaggggatgtgcctactatggcaaatggatgagttagccctgCTTCTTGGCGATCCAGGGCC-----TTTACAAAGAAG-AGAAGGCCTAGTGGAAAAGGTACAGTGGAGCTT-CAACTACAGCCTCCAAACTG-GGGCTGCAGACAGTGCCAAGGCTTGCACACTGTTT-GTATC--AGTCATTGA-CTTCC-AGTAGAAAG-CTCTTGAGAAGCCCATTGCCAGGG--------TCATGATTAATGTCTGTGTACA-CAGAACTTTTGATATACTATGCAGCATACCAGAGTTCAT-TG--TGTGTTTTACACTGGGCATAACCAGCTTCTCACACAAATATA-ACAT---TTTGTA---TTATTGGTAGACTTGTTTTT--GAACTTTAAATATA-CTATATTTTTG--- i canFam3.chr9 C 0 C 0 a score=-3700.000000 s hg38.chr17_JH159146v1_alt 13764 1 + 278131 -A s panTro4.chr17 66130643 1 - 82630442 -A i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24656510 1 - 73212453 -T i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47881760 1 - 81552678 -T i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52994504 1 + 80904711 -T i rheMac3.chr16 C 0 I 6 s macFas5.chr16 52516896 1 + 80997621 -T i macFas5.chr16 C 0 I 6 s papAnu2.chr16 47562502 1 + 74645514 -t i papAnu2.chr16 C 0 I 8 s chlSab2.chr16 9828768 1 - 75148670 -T i chlSab2.chr16 C 0 I 5 s canFam3.chr9 39247561 1 - 61074082 G- i canFam3.chr9 C 0 C 0 e mm10.chr11 99419250 2 + 122082543 I e calJac3.chr5 112672201 314 + 159171411 I a score=2137461.000000 s hg38.chr17_JH159146v1_alt 13765 581 + 278131 AAATCACTGAATTAGGACTGTTAGCATTCCTATTGTCATTGCCTTATAATGAAAATGACAAAATCAGAAAGTGC---------------------CTCAAATTTGTTGAGCCTTAGCAGGAACCACCATCACTACTAC----------------------------------------CAacacacacacatcacacacac----------------acatac--cacacaca-tcacacaGAAATC-TAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-CCTGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG-------AAAAAAAAAAGTAGCTGAGTGAGGCTGCCCTGTCTGACTCACATCCTCGTGGTTCTTCTTCATGTAGG-CCAGCTCCTCGTTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCGGCCTCTACGCCCTGGCGCAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAACCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTATTTCTTGCTTAAATCTGTG-----------------------------------------CACCTACTTAATAAT--------GGCAGCATT s panTro4.chr17 66130644 583 - 82630442 AAATCACTGAATTAGGACTGTTAGCATTCCTATTGTCATTGCCTTATAATGAAAATGACAAAATCAGAAAGTGC---------------------CTCAAATTTGTTGAGCCTTAGCAGGAACCACCATCACCACTAC----------------------------------------CACcacacacacatcacacacac----------------acacacaccacacaca-tcacacaGAAATC-TAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-CCTGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG-------AAAAAAAAAAGTAGCTGAGTGAGGCTGCCCTGTCTGACTCACGTCCTCGTGGTTCTTCTTCATGTAGG-CCAGCTCCTCGTTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCGGCCTCTACGCCCTGGCGCAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAACCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTATTTCTTGCTTAAATCTGTG-----------------------------------------CACCTACTTAATAAT--------GGCAGCATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24656511 594 - 73212453 AAATCACTGAATTAGGACAGTTAGCATTCCTATTGTCATTGCCTTATAATGAAAATGACAAAATCAGAAAGTGC---------------------CTCTAATTTGTTAAGCCTCAGCAGGAACGACCATcaccaccac----------------------------------------caccacacacacatcacacacac----------------acacca--tacacaca-tcacacaGAAATCNTAAAACAAATGG-CATTTTAACAGGGAGTCAATGTATTCTCCTTCTACGCTTGTGCCTGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAGAGAAAAAAAAAAAAAAAGTAGCTGAGTGAGGCTGCCCTGCCTGACTCACGTCCTCGTGGTTCTTCTTCATGTAGGCCCAGCTCCTCGTTCAGGCTTTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCATCTCGTCCAGCACCCGACGCAGGCCATTGATGTCGGCCTCTACGCCCTGGCGCAGGGCCAGTTCATTCTCGTACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAACCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTATTTCTTGCTTAAATCTGTG-----------------------------------------CACCTACTTAATAAT--------GGCAGCATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47881761 584 - 81552678 TAATCACTGAATTAGGACAGTCAGCATTCCTATTGTCATTGCCTTATAATGAAAATGACAAAATCAGAAAGTGC---------------------CTCTAATTTGTTAGGCCTTAACAGGAaccaccatcaccaccac----------------------------------------caccacacacacatcacacacac----------------acacca--cacacaca-tcacacaGAAATT-TAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-CCTGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG----GAAAAAACAAAAAGTAGCTGAGTGAGGTTGCCCTGTCTAACTCACATCCTCGTGGTTCTTCTTCATGTAGG-CCAGCTCCTCATTCAGGCTCTCAATCTGCATCTCCAGGTCGGTCCTGGTCAGAGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCGGCCTCTACGCCTTGGCGCAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAACCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTATTTCTTGCTTAAATCTGTG-----------------------------------------CACCTACTTAATAAT--------GGCAGCGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52994511 636 + 80904711 AAATCACTGAATTAGGACAGTTAGCATTCCTATTGTCATTGCTTTATAATGGAAATGACAAAATCAGAAAGTAC---------------------CTCTAATCTGTTAAGCCTTAACAGGATCCACCATCACCACCACCACcacacacacatcacgcacaccacatgcgcatcacacacaccacacacacatcacgcacaccacatgcacatcacatacacca--cacacaca-TCCCACAGAAATC-CAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-TCCGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG--------AAAAAAAAAGTAGCTGAGTGAGGCCGCCCTGTCTGACTCACTTCCTCATGGTTCTTCTTCATGTAGG-CCAGCTCCTCATTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCAGCCTCGACGCCCTGGCGTAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAGCCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTCGTTATTGCTTACATCTGTG-----------------------------------------CACCTACTTCATAAT--------GGCAGCATT i rheMac3.chr16 I 6 C 0 s macFas5.chr16 52516903 597 + 80997621 AAATCACTGAATTAGGACAGTTAGCATTCCTATTGTCATTGCTTTATAATGGAAATGACAAAATCAGAAAGTAC---------------------CTCTAATCTGTTAAGCCTTAACAGGATCCACCATCACCACCAC----------------------------------------CACCACACACACATCACGCACACCACATGCACATCACATACACCA--CACACACA-TCCCACAGAAATC-CAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-TCCGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG-------AAAAAAAAAAGTAGCTGAGTGAGGCCGCCCTGTCTGACTCACTTCCTCATGGTTCTTCTTCATGTAGG-CCAGCTCCTCATTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCAGCCTCGACGCCCTGGCGTAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAGCCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTCGTTATTGCTTACATCTGTG-----------------------------------------CACCTACTTCATAAT--------GGCAGCATT i macFas5.chr16 I 6 C 0 s papAnu2.chr16 47562511 597 + 74645514 aaatcactgaatTAGGGCAGTTAGCATTCCTATTGTCATTGCTTTATAATGGAAATGACAAAATCAGAAAGTAC---------------------CTCTAATTTGTTAAGCCTTAACAGGATccaccatcaccacgac----------------------------------------catcacacacacatcacgcacaccacatgcacatcacatacacca--cacacaca-tcacacagaaaTC-CAAAAcaaatggccattttaacagGGAGACAATGTATTCTCC----ATACTTGT-TCCAACTCCAGATTTCTAAATTTGAAATTGTTATTTTTGggtctgggag-------aaaaaaaaaagtagctgagtgAGGCTGCCCTGTCTGACTCACTTCCTCGTGGTTCTTCTTCATGTAGG-CCAGCTCCTCATTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCAGCCTCGACGCCCTGGCGTAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAACCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTCGTTATTGCTTACATCTGTG-----------------------------------------CACCTACTTCATAAT--------GGCAGCATT i papAnu2.chr16 I 8 C 0 s chlSab2.chr16 9828774 596 - 75148670 AAATCACTGAATTAGGACAGTTAGCATTCCTATTGTCATTGCTTTATAATGGAAATGACAAAATCAGAAAGTAC---------------------CTCTAATTTGTTAAGCCTTAACAGGATCCACCATCACCATCAC----------------------------------------CACcacacacacatcacgcacatcacatgcacatcacatacacca--cacacaca-tcacacaGAAATC-CAAAACAAATGGCCATTTTAACAGGGAGACAATGTATTCTCC----ATACTTGT-TCCGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGGGTCTGGGAG--------AAAAAAAAAGTAGCTGAGTGAGGCCGCCCTGTCTGACTCACTTCCTCGTGGTTCTTCTTCATGTAGG-CCAGCTCCTCATTCAGGCTCTCGATCTGCATCTCCAGGTCGGTCCTGGTCAGGGTCAGCTCGTCCAGCACCCGGCGCAGGCCATTGATGTCAGCCTCGACGCCCTGGCGTAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCAAAGCAGTTGAGGGAATC------AACACAGCCATTTGAACAAGGCCACTG-----ATCTTCAGGGCTCGTTATTGCTTACATCTGTG-----------------------------------------CATCTACTTCATAAT--------GGCAGCATT i chlSab2.chr16 I 5 C 0 s calJac3.chr5 112672515 549 + 159171411 AAATCACTGAATTAGGACAGTTAGCTTGCCTATTGTCATTGCCTTATAATGAAATTGACAAAATCAGGAAGTGC---------------------CTCTAATTTGTTAAGCCTTAACAGGAACCACCATCACCACCAC----------------------------------------------------------------------------------------ACACACA-TCACACAGAAATC-CAAAACAAATGGCCATTTTAATAGGGAGACAATGTGTTCTCC----ATACTTGT-CCCGACTCCAGATTTCTAAATTTGAAATTGTAATTTTTGAGTCTGGGAG--------AAAAAAAAAGCAGCTGAGTGAGGCTGCCCTGTCTGACTCACCTCCTCATGGTTCTTCTTCATATAGG-CCAGCTCCTCGTTCAGACTCTCGATCTGCATCTCCAGATCGGTCCTGGTCACGGTCAGCTCATCCAGCACCCGGCGCAGGCCATTGATATCGGCTTCTACCCCCTGGCGCAGGGCCAGTTCATTCTCATACCTGAAAACCAAGTGCACAGCAGTCTAGGGAATC------AACACAACCATTTGAACAAAGCCACTG-----AT-GTCAGGTCAATTTCTTGCTTAAATCTGTG-----------------------------------------CAACTACTTAATAAT--------GGCAGTACT i calJac3.chr5 I 314 C 0 s mm10.chr11 99419252 617 + 122082543 AAAACATTTGACGAAGGTAATTAAAATTCC---TGCCATTACTTAATGATGGAAATAGTAAAACCAGAATATTCCCCGCTATCCCAAGTCTAATACTCGAATCCATTAAGCCTTAATAAAA------------AATAC----------------------------------------CATGACACATACA-CAAGAGGGTGAGGTGGGGTGGGGGTGGGGGG--CACACATA-----GAGGAACAC-CAAAATGAATAGTCACTGTAACACAGAGATAATATATTCTCT----AGCTTTGT-T-----------------AATTCAAAGTTTCAATTTTTGGGTCTGGGAG-------GAAAAAAAATAAAGCTA-------------TTTCTGACC----TCTTCGTGGTTCTTCTTCATGTAAG-CCAGCTCCTCAGTGAGGGTCTCAAGCTGGGCTTCCAGGTCGGCTCTAGTCAGGGTCAGCTCGTCCAGCACCCTTCGCAGCCCGTTGATGTCGGCCTCCACGGTCTGGCGCAGGGCCAGCTCATTCTCATACCTGGAACCCAAGTGCCGA-CAGTTTAGGAAGTCAACATTAACACAACCATTGCGAT--GGATCCTG--GACATCTTctgggcta--tgtggcccatgtctgtaatcctagtacttgagaagtagagccatgagttcaaggtcatcctccactatatagtgagttcaaggcagccct i mm10.chr11 I 2 I 101 s canFam3.chr9 39247562 558 - 61074082 AAATCACTAAGTTAGGACCATTAAAATTCTGGTTGTCCTTGTCTAATGAGCAAAATGACAAAATCAGAAAGCAC---------------------TGCTAATCTGTTAAACTTTAACGGGAACCACTATCAATCCTGC----------------------------------------CACTGC----------------------------------CACCA--CACATACACTCACTCAGAAATC-CAAAACTAATGGCCAATTTAACAGGGGTATCATGTATCATCC----ATACCTGT-TCTAACTCTGGATTTGTAAATTTGAAATTGTAATTTTTGAACTTGGGAG----------GAAAAAAGCCACTTAG-AAATCTGCCTTTTCTGGCTGACCTCTTCGTGGTTCTTCTTCAGGTAGG-CCAGTTCTTCTGTTAGGTTCTCGATCTGCATTTCCAGGTCGGCTCTGGCCAGGGTCAGTTCGTCCAGCACACGGCGCAGGCCGTTAATGTCAGCCTCCACACTCTGGTGCAGGGCCAGCTCGTTCTCGTACCTGAAAACCAAGCACAAA--AGTTTCCGAAGTC------AACACATCCATTTGAATAAGGCCTCTGCCATCATCTTCAGGTCTGTTTTGCACC-----CTGTG-----------------------------------------TGATTACGTAAAAGT--------GGCAGCATT i canFam3.chr9 C 0 C 0 a score=1524193.000000 s hg38.chr17_JH159146v1_alt 14346 431 + 278131 GTAGTGTATGATGCAGTTTTTGC-TGTTGTGTTTTTCCTTTCC-TTTTTT--CCCACCATTGTTTACTGTTCAGTTGGGG--AGGAGAAGAAAAGTGAATAAATTATAAGGCAATACTTTCCTACCAG----------CGATGAATCCCAATACCACAGCATCCCAGGGAATAATTTTCCCTTTGGCTGGCTGCCGTGGCTGTAAATAGCAGC-AGCCCCTCTCTAAGTGGAATTT-----------CTAAAAGCCGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAACGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTTTGACTAAGATTTTACAGGTTCAGAACCATGGCCATTGCAACTTCC----TGTGTAGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTACCTATATCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG s panTro4.chr17 66131227 431 - 82630442 GTAGTGTATGATGCAGTTTTTGC-TGTTGTGTTTTTCCTTTCC-TTTTTT--CCCACCATTGTTTACTGTTCAGTTGGGG--AGGAGAAGAAAAGTGAATAAATTATAAGGCAATACTTTCCTACCAG----------CGATGAATTCCAATACCACAGCATCCCAGGGAATAATTTTCCCTTTGGCTGGCTGCCGTGGCTGTAAATAGCAGC-AGCCCCTCTCTAAGTGGAATTT-----------CTAAAAGCCGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAACGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTTTGACTAAGATTTTACAGGTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTACCTATATCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24657105 432 - 73212453 GCAGTGTATGATGCAGTTTTTGC-TTTTGTGTTTTTCCTTTCC-TTTTTT--TCCACCATTGTTTACCATTCAGTTGGAG--AGGAGAAGAAAAGTGAAAAAATAATAAGGGAATACTTTCCTACCAG----------CGATGAATCCCAATACCACAGCATCCCAGGGAATAATTTTCCCTTTGGCTGGCTGCCGTGGCTGTAAATAGCAGCAAGCCCCTCTCTAAGTGGAATTT-----------CTAAGAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAACGTCC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTTTTACTAAGATTTTACAGTTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTACCCGTGTCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47882345 432 - 81552678 GCAGTGTATGATGCAGTTTTTGC-TTTTGTGTTTTTCCTTTCCTTTTTTT--CCCACCATTGTTTACTGTTCAGTTGAGG--AGGAGAAGAAAAGTGAATAAATTATAAGGCAATACTTTCCTACCAG----------CAATGAATCCCAATACCGCAGCATCCCAGGGAATAATTTTCCCTTTGGCTGGCTGCCGTGGCTATAAATAGCAGC-AGCCCCTCTCTAAGTGGAATTT-----------CTAAAAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTACTTAACGTTC-TTCATGATTTAACTTAGAACACTGATACTTCTTTAGTGGCTTTTACTAAGATTTTACAGGTTCAGGACCATGGCCATTGTAACTTTC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTACCTATGTCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52995147 426 + 80904711 GCAATGTATGATGAGGATTTTGC-TTTTGTGTTTTTTCTTTCC-TTTTTT--TCCACCATTGCTTACCATTCAGTTGGA-----GAGAAGACAAGTGAAAAAATAATGAGGCAGTACTTTCCTACCAG----------CTATGAATCCCAATACCACAGCATCCCAGGGAATAATTTTCCCTTT-GCTGGCTGCCATGGCTATAAATAGCAGC-AG-CCCTCTCTAAGTGGAATTT-----------CTAAAAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAATGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTGTTACCAAAATTTTACAGGTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTCCTTATATCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52517500 426 + 80997621 GCAATGTATGATGCGGATTTTGC-TTTTGTGTTTTTTCTTTCC-TTTTTT--TCCACCATTGTTTACCGTTCAGTTGGA-----GAGAAGACAAGTGAAAAAATAATGAGGCAGTACTTTCCTACCAG----------CTATGAATCCcaataccacagcatcccagggaataattttcccttt-gctggctgccatggctatAAATAGCAGC-AG-CCCTCTCTAAGTGGAATTT-----------CTAAAAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAATGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTGTTACCAAAATTTTACAGGTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTCCTTATATCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47563108 426 + 74645514 GCAATGTATGATGCagattttgc-ttttgtgtttttcctttcc-tttttc--cccaccaTTGTTTACCGTTTGGTTGGA-----GAGAagacaagtgaaaaaataatgaGGCAGTACTTTCCTACCAG----------CTATGAATCCCAATACCACAGCATCCCAGGGAATAATTTTCCCTTT-GCTGGCTGCCGTGGCTATAAATAGCAGC-AG-CCCTCTCTAAGTGGAATTT-----------CTAAAAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAATGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTGTTACCAAAATTTTACAGGTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTCCTTATATCTGGGAGAGTTGAGcatggaaaaggaggaag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9829370 426 - 75148670 GCAATGTATGATGCAGATTTTGC-TTTTGTGTTTTTCCTTTCC-TTTTTT--TCCACCATTGTTTACCGTTTGGTTGGA-----GAGAAGACAAGTGAAAAAATAATGAGGCAGTACTTTCCTACCAG----------CTATCAATCCcaataccacagcatcccagggaataattttcccttt-gctggctgccgtggctatAAATAGCAGC-AG-CCCTCTCTAAGTGGAATTT-----------CTAAAAGCAGTTGAAAAT--------AA-------GTTACTCTTTTTGCTTAATGTTC-TTCATGATTTAACTTAAAACACTGATACTTCTTTAGTGGCTGTTACCAAAATTTTACAGGTTCAGGACCATGGCCATTGCAACTTCC----TGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTCTTCCTTATATCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG i chlSab2.chr16 C 0 I 131 s calJac3.chr5 112673064 433 + 159171411 GTAGTGTATGATGCGGTTTTTGC-GTTTGTGTTTTTCCTTTCT-TTTTTTCCCCCACCATTGTTTACAGTTCAGTTAGAG--AGGAGAAGAAAAGTGAAAAATCAGTGAGGCAGTACTTTTCTACCAG----------CTATGAATCCCAATAGCACAGCATCCCAGGGAATAATTTTCCCTCTAGCTGGCTGCTGTGGCTATAAATAGCAGC-AGCCCCTCTCTAAGTGGAATTT-----------CTAAAAGCA-TTGAAAAT--------AA-------GTTGCTCTTTTTGCTTAACG----TTCATGATTTAACTGAAAACATTGATACTTCTTTAGTGGCTTTCACCAAGATTTTACAGGTTCAGGACCATGGCCACTGCAACTTCCTGTGTGTGTGGAAATTTTGTGAAGCAAAAAGGAAATTAGTATTTATTCCTTACGTCTGGGAGAGTTGAGCATGGAAAAGGAGGAAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99419970 390 + 122082543 ACAGTATATTATGCCGATTTTTTATTTTGTGACTTTTCCTCTG-TGTGTG--AGTATGATTGCTTACTCCTCATTTGGAGACAAGAGAAGAAAGATGAAGAAATGATGAACCGAGAACTTCCTACCAG----------CAGTGATCCTT---------GCATCCCA-GGAAGAAGGCTCCCTGT------------------------------AGGTTGACTTTCTGATGATATT-----------CTAAAACTAGCTGGAGAT--------AAACCGATGGCTACTCTTTCTGCCTGATTTCC-TTTGAGGGTT-GCTTTAAACCTTGTTATTTCATTAGTAGCTTTTACTGGGTCTTCACAGGCTCAGG----------TTACAACTTCC----TGTGGGGGCATTTTATAATACAAAAAGGAAATTAATTTGTATTCCCTCTGCATAGGAGGGTGGGGTATGGGAAAGGATCTG- i mm10.chr11 I 101 C 0 s canFam3.chr9 39248120 444 - 61074082 GTAATATATGATGCTCTGTTTCC-TTTTTAACGTTTTCCCTTC-CTTTTC--CTCATAATAATTTACTACTCAGTTGGA----------GAGAAGTGAAAGAATTGTGAGGTGAGACTTTTCTACCAGTCTGTCTCTACCATGAACCTCAGTAGCCCTGCATCCCAGGGAACAGTTTCTCCTTTGGCTGGCTGCCCTGGC-------AGTAGT-AG-CCCTCTCCGGGTGGAGTTTCTGATGGAATCCTAAAAGCAGTTGAAAATTTAAAAAAAA-------AATA-GATTTTTGCTTAACTTTCATTCATGATTTAATTTAAAACATTGATACTTCTCTGATACCTTTTACCAAGATTTTACAGGTGGAGGATCATCACCACTGCAACATCC----TGCATGGAGATTTTGTGGAGCAAAATGAGTGTTAGTGTTTCTTCCTTATGTGCGGGAGGATGGAATATGGGAGAGGAGGAAG i canFam3.chr9 C 0 C 0 a score=218679.000000 s hg38.chr17_JH159146v1_alt 14777 59 + 278131 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGGAAAACAAT s panTro4.chr17 66131658 59 - 82630442 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGGAAAACAAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24657537 59 - 73212453 GAATATAAAAATTAGTACATGATTAATCTTTCCATTGTATATGTCATCAGGAAAACAAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47882777 59 - 81552678 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGGAAAACAAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52995573 58 + 80904711 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGG-AAACAAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52517926 58 + 80997621 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGG-AAACAAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47563534 58 + 74645514 gaatataaaaattagtacaTGGTTAATCTTTCCATTGTATGTGTCATCAGG-AAACAAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9829927 58 - 75148670 GAATATAAAAATTAGTACATGGTTAATCTTTCCATTGTATGTGTCATCAGG-AAACAAT i chlSab2.chr16 I 131 C 0 s calJac3.chr5 112673497 45 + 159171411 --------------GAACATGGGTAATCTTTCCATTGCATGTGTCATTAGGAAAACGAT i calJac3.chr5 C 0 C 0 s mm10.chr11 99420360 58 + 122082543 GTATATAAAAATAAATGCATGGTTAAGCTTTCAGTCATATGTGTCATCAGGGACACAA- i mm10.chr11 C 0 C 0 s canFam3.chr9 39248564 59 - 61074082 AAATATAAAAATAGGTGTGTGGTTAATATTTTAGTGGTATGTGTCATCAGGAAAAATAT i canFam3.chr9 C 0 I 39 a score=29344.000000 s hg38.chr17_JH159146v1_alt 14836 12 + 278131 GG--------------------------------------TTGATACATT s panTro4.chr17 66131717 12 - 82630442 GG--------------------------------------TTGATACATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24657596 12 - 73212453 GG--------------------------------------TTGATACATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47882836 12 - 81552678 GG--------------------------------------TTGATACATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52995631 12 + 80904711 GG--------------------------------------TTGATACATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52517984 12 + 80997621 GG--------------------------------------TTGATACATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47563592 12 + 74645514 GG--------------------------------------TTGATACATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9829985 12 - 75148670 GG--------------------------------------TTGATACATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112673542 50 + 159171411 GGTTTCATTGAACACCTTGGCAAAAACTGATGAACTCATTTTGATACATG i calJac3.chr5 C 0 C 0 s mm10.chr11 99420418 10 + 122082543 ----------------------------------------TTGTTCCATT i mm10.chr11 C 0 C 0 e canFam3.chr9 39248623 39 - 61074082 I a score=148120.000000 s hg38.chr17_JH159146v1_alt 14848 69 + 278131 GAAAATTGAGGTTTAgaggcgggtggatcatgaggtcaggagtttga--gaccag--cctggccaagatagtg s panTro4.chr17 66131729 69 - 82630442 GAAAATTGAGGTTTAgaggcgggtggatcatgaggtcaggagtttga--gaccag--cctggccaagatagtg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24657608 73 - 73212453 GAAAATTGATGTTTAgaggcgggtggatcatgaggtcaggagttcgaagaaccaggcctgggccaagacagtg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47882848 69 - 81552678 GAAAATTGAGGTTTAgaggcgggtggatcatgaggtcaggagttcga--gaccag--cctggccaagatagtg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52995643 69 + 80904711 GAAAACTGAGGTTTAgaggcagatggatcataaggtcacaagttcga--aaccag--cctggccaagatagtg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52517996 69 + 80997621 GAAAACTGAGGTTTAgaggcagatggatcataaggtcacgagttcga--aaccag--cctggccaagatagtg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47563604 69 + 74645514 GAAAATTGAAGTttagaggtgggtggatcataaggtcacgagttcga--aaccag--cctggccatgatagtg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9829997 69 - 75148670 GAAAACTGAGGTTTAgaggcaggtggatcatcaggtcacgagttcga--aaccag--cctggccaagacagtg i chlSab2.chr16 C 0 C 0 s mm10.chr11 99420428 22 + 122082543 ---------------------------------------------GA--ACCC----CTTGGCAAAGATATTG i mm10.chr11 C 0 I 20 e canFam3.chr9 39248623 39 - 61074082 I e calJac3.chr5 112673592 0 + 159171411 C a score=419893.000000 s hg38.chr17_JH159146v1_alt 14917 198 + 278131 aaaccccgtc-tctactaaaaatacaataattagctgggcacggtggcagccgcctgtaatcccagctactcggga-ggctgaggcaggagaatcacttgaacctgggaggca-ggggttgcagtgagccgagatcgcgtcactgcactccagcctgggtgacagagcgagactccatctc-aa-----------------aaacaaaaaacaaaaaac s panTro4.chr17 66131798 198 - 82630442 aaaccccatc-tctactaaaaatacaataattagctgggcacggtggcagccgcctgtaatcccagctactcggga-ggctgaggcaggagaatcacttgaacctgggaggca-ggggttgcagtgagccgagatcgcgtcactgcactccagcctgggtgacagagcgagactccatctc-aa-----------------aaacaaaaaacaaaaaac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24657681 185 - 73212453 aaaccctgtcttctactaaaaatacaataattagctgggctcggtggcaggcgcctgtaatcccagctactcgggagggctgaggcaagagaatcacttgaacctgggaggca-ggggttgcagtgagccgagattgcatcactgcactccagcctgggtgacagagtgagactctgtctc-ag-----------------aaa--------------- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47882917 215 - 81552678 aaaccccgtc-tctactaaaaatacaataattagctgggctcggtggcaggcgcctgtaatcccagctactcggga-ggctgaggcaggagaatcacttgaacctgggaggcagggggttgcagtgagccgagatcatgtcactgcactccagcctgggtgacagagtgagactct-tctc-aaaacaaaacaaaacaaacaaacaaacaaaAAAAACC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52995712 189 + 80904711 aaaccccatc-tctactaaaaatacaaaaattagctgggctcggtggcaggtgcctgtaatcccagctacttggga-ggctgaggcaggagaatcatttgaacccaggaggca-gaggttgcagtgagccgagatcgcaccactgcactccagcctgggtgacagagcgagactctgtctc-aa-----------------aaa---------aaaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52518065 189 + 80997621 aaaccccatc-tctactaaaaatacaaaaattagctgggctcggtggcaggtgcctgtaatcccagctacttggga-ggctgaggcaggagaatcatttgaacccaggaggca-gaggttgcagtgagccgagatcgcaccactgcactccagcctgggtgacagagcgagactctgtctc-aa-----------------aaa---------aaaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47563673 187 + 74645514 aaaccctatc-tctactaaaaatacaagaattagctgggctcggtggcaggtgcctgtaatcccagctacttggga-ggccgaggcaggagaatcatttgaacccaggaggca-gaggttgcggtgagctgagatcgcaccattgcactccagcctgggtgacagagcgagactctgtctc--------------------aaa---------aaaaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9830066 190 - 75148670 aaaccccatc-tctactaaaaatacaaaaattagctgggctcggtggcaggtgcctgtaatcccagctacttggga-ggctgaggcaggagaatcatttgaacccgggaggca-gaggttgcagtgagccgagatcgcactactgcactccagcctgggtgacagagcgagactctatctcaaa-----------------aaa---------aaaaaa i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39248623 39 - 61074082 I e mm10.chr11 99420450 20 + 122082543 I e calJac3.chr5 112673592 0 + 159171411 C a score=12066.000000 s hg38.chr17_JH159146v1_alt 15115 7 + 278131 aaaaaaa-- s panTro4.chr17 66131996 7 - 82630442 aaaaaaa-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24657866 7 - 73212453 aaaaaaa-- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47883132 7 - 81552678 AAAAAAA-- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52995901 7 + 80904711 gaaaaaa-- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52518254 7 + 80997621 gaaaaaa-- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47563860 7 + 74645514 gaaaaaa-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9830256 7 - 75148670 gaaaaaa-- i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39248662 7 - 61074082 --ATACATG i canFam3.chr9 I 39 C 0 e mm10.chr11 99420450 20 + 122082543 I e calJac3.chr5 112673592 0 + 159171411 C a score=1767121.000000 s hg38.chr17_JH159146v1_alt 15122 489 + 278131 gaaAATTGAGGTTTAGGACACTGGTAGGATTATGGTGTCAGTCACATCATGAGTTGAGTCAATAGCACACTACAAATATCGTGAT--CCATAGCCCTGGGTTTAAGTAACTTATAATTTAAGGACATTTAATCTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAAACAGTAAATATATGGAGTATGTGAACTTCAGAAG---------ATTTTATATCAATGAAGGCAGGACAGTAGGA---CAGAAGACATGGTGGGACACGCCCATGATCTTCAG-------TTTATTCGACTCACTTCATCCTGAAGTCCTCAGCAGCTAGTCTCGCATTGTCAATCTGCAAGAGGAGCTGGGCATTTCCAATGCTGGCTGAAATGATCTGGCAAAAGAGAGGGACACACACAAGATTGAAGCCCTAAAAGACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-GAAAATGGTGATATTAA-ATGCTGTTTT s panTro4.chr17 66132003 489 - 82630442 gaaAATTGAGGTTTAGGACACTGGTAGGATTATGGTGTCAGTCACATCATGAGTTGAGTCAATAGCACACTACAAATATCGTGAC--CCATAGCCCTGGGTTTAAGTAACTTATAATTTAAGGACATTTAATCTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACGAAAACAGTAAATATATGGAGTATGTGAACTTCAGAAG---------ATTTTATATCAATGAAGGCAGGACAGTAGGA---CAGAAGACATGGTGGGACACGCCCACGATCTTCAG-------TTTATTCGACTCACTTCATCCTGAAGTCCTCAGCAGCTAGTCTCGCATTGTCAATCTGCAAGAGGAGCTGGGCATTTCCAATGCTGGCTGAAATGATCTGGCAAAAGAGAGGGACACACACAAGATTGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-AAAAATGGTGATATTAA-ATGCTGTTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24657873 492 - 73212453 gaaaaTTGAGGTTTAGGACACCGGTAGAATTATGGTGTCAGTCACATCATGAGTTGAGTCAATAGCACACTACAAATATCATGAT--CCATAGCCCTGGGTTTAAGTAACTTATAATTTAAGGACATTTAATCTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAACCAGTAAATATATGGAGTATGTGAACTTCAGAAG---------ATTTTATATCAATGAAGGCAGGATAGTAGGG---CAGAAGACATGGTGGGACACGCCCACGATCTTCAG-------TTTATTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTTGCGTTGTCAATCTGCAAGAGGAGCTGGGCATTTCCAATGCTGGCTGAAATGATCTGGCAAAAGAGAGGGACACACACAAGATTGAAGCCCTGAAAAACTAG----TATTATACAAAATATAATTTTTGACACAAAGGTAAAAAATGGTGATGTTAA-ATGCTGTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47883139 489 - 81552678 GACAATTGAGGTTTAGGACACTGGTAGAATTATGGTGTCAGTCACATCATAAGTTGAGTCAATAGCACACTACAAATATTGTGAT--CCATAGCCCTGGGTTTAAGTAACTTATAACTTAAGGACATTTAATCTGAATTGCATTAGATTCTAATTACTTTCTAGAACACTCTATGTGAATTTACCAAAACAGTAAATATATGGAGTATGTGAACTTCAGAAG---------ATTTTATATCAATGAAGGCAGGACAGTAGGG---CAGAAGACATGGTGGGACATGCCCACGATCTTCAG-------TTTATTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTCGCGTTGTCAATCTGCAAGAGGAGCTGGGCATTTCCAATGTTGGCTGAAATGATCTGGCAAAAGAGAGGGACACATACAAGATTGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-AAAAATGGTGATGTTAA-ATGCTGTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52995908 482 + 80904711 gaaaaTTGAGGTTTAGGACTTTGGTAGGATTACGGTGTCAGTCACATCA-----TGAGTCAATAGCACACTACAAATATAGTGAT--CCATAGCCCTGGGTTTAGGCAACTTATAATTTAAGGACATTTAATGTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAAACACTAAATATATGGAGCATGTGAACTTCAGAAG---------ATTTTATATCAGTGAAGACAGGACAGTAGGG---CAGAAGACATGGTGGGACATGGCCGTGATCCTCAG-------TTTCTTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTCGCATTGTCGATCTGCAAGAGGAGCTGGGCATTTCCAATGTTGGCTGCAATGATCTGGCAAAAAAGAGGTACACACACGAGA-TGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-AAAAATGGTGATGTTAA-ATGCTGGTT- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52518261 482 + 80997621 gaaaaTTGAGGTTTAGGACTTTGGTAGGATTACGGTGTCAGTCACATCA-----CGAGTCAATAGCACACTACAAATATAGTGAT--CCATAGCCCTGGGTTTAGGCAACTTATAATTTAAGGACATTTAATGTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAAACACTAAATATATGGAGCATGTGAACTTCAGAAG---------ATTTTATATCAGTGAAGACAGGACAGTAGGG---CAGAAGACATGGTGGGACATGGCCGTGATCCTCAG-------TTTCTTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTCGCATTGTCGATCTGCAAGAGGAGCTGGGCATTTCCAATGTTGGCTGCAATGATCTGGCAAAAAAGAGGTACACACACGAGA-TGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-AAAAATGGTGATGTTAA-ATGCTGGTT- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47563867 482 + 74645514 gaaaattgaggtttAGGACTTTGGTAGGATTACGGTGTCAGTCACATCA-----TGAGTCAATAGCACACTACAAATATAGTGAT--CCATAGCCCTGGGTTTAGGCAACTTATAATTTAAGGACATTTAATGTGAATTGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAAACACTAAATATATGGAGCATGTGAACTTCAGAAG---------ATTTTATATCAATGAAGGCAGGACAGTAGGG---CAGAAGACATGGTGGGACATGGCCGTGATCTTCTG-------TTTCTTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTCGCGTTGTCGATCTGCAAGAGGAGCTGGGCATTTCCAATGTTGGCTGCAATGATCTGGCAAAACAGAGGTACACACATGAGA-TGAAGCCCTAAAAAACTag----tattatac-aaatat-atttttgacaCAAAGGT-AAAAATGGTGATGTTAA-ATGCTGGTT- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9830263 482 - 75148670 gaaaaTTGAGGTTTAGGACTTTGGTAGGATTACAGTGTCAGTCACATCA-----TGAGTCAATAGCACACTACAAATATAGTGAT--CCATAGCCCTGGGTTTAGGCAACTTATAATTTAAGGACATTTAATGTGAATCGCATTAGATTCTAATTACTTTCTAGAACACCCTATGTGAATTTACCAAAACACTAAATATATGGAGCTTGTGAACTTCAGAAG---------ATTTTATATCAATGAAAGCAGGACAGTAGGG---CAGAAGACATGGTGGGACATGGCCGTGATCCTCAG-------TTTCTTCCACTCACTTCATCCTGAAGTCCTCGGCAGCCAGTCTTGCATTGTCGATCTGCAAGAGGAGCTGGGCATTTCCAATGTTGGCTGCAATGATCTGGCAAAAAAGAGGTACACACACGAGA-TGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-ATTTTTGACACAAAGGT-AAAAATTGTGATATTAA-ATGCTGGTT- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112673592 491 + 159171411 GAAAATTGAGGTTTAAGACACTGGCAGAATTATGGTGTCAGTCACATCA-----TGAGTCAATAGCGCACTACAAATACAGTGAT--CCATAGCCCTGGGTTTAAGCAACTTATAATTTAAGGACATTTAATGTGAATTGCATTAGATTCTGATTACTTTCTAGAACGCCCTATGTGAATTTACCAAAACACTAAATATATGGAACATGTGAACTTCAGAAGATTTAAAATATTTTATATCAGTGAAGGTAGGACAGGATGG---CAGAAGACATGGTGGGACATGCCCGCAATCCTCTG-------TTTATTCCACTCACTTCATCCTGAAGTCCTCGGCGGCCAGTCTCGCGTTGTCAATCTGCAAGAGGAGCTGGGCGTTTCCAATGCTGGCTGAAATGATCTGGCAGAAGAGAGGGACACACACAAGA-TGAAGCCCTAAAAAACTAG----TATTATAC-AAATAT-GTTTTTGACACAATGGT-AAAAATGGTGATGCTAA-ATGCTTTTT- i calJac3.chr5 C 0 C 0 s mm10.chr11 99420470 466 + 122082543 GAAAATTCAGGTCTAA-ACATAGGTACAATTATCAGGT----------------TGAATT-ATGACTCATTGCAAAGA-GATGAT--CCGTAGCTCCAGGTGGAAGCAACTTATAACTTAAAGCTGTGTACAGTGGACGG--TTTGACTTTCAGTGCTTTTAAAAGCACCCTGTGTGGATTTAGGGGTGCACTGAAGGCAGGGGCCATGTGGGCTGCAGGAC---------ATTGGAATCGTTTGCCATCAGCGCAGCAGGA---AGTGGGGAGTGGGAGGAGGAAGGAGTTACCACCAG-------CG-----GACTCACTTCATCCTGAAGTCCTCGGCAGCCAGCCTTGCGTTGTCAATCTGCAGGAGGAGCTGGGCGTTGCTGACTCTGGCAGAAACGATCTGGGAGAACAGAGGGAGACACATGAACACGGAGTCCTAAAGCACTGGCAGTTAGTTCAC-TAGTGT-CACTTTG-CACATAAGA-ATAAATCGTGACACAAA-ATACATTTTT i mm10.chr11 I 20 I 486 s canFam3.chr9 39248669 493 - 61074082 GAAGATTGAGGTTTAGGACATTGGTGTAAATACTATGT----CACAGTA-----TAAGCCAAAAGCAAATTACAAACATGGTGGTGATCATAGCCCTAGGTTTAAGTAGCGTAT-ACCTAAGGACATGTAACGTGAATTGTGTTTGAATCAGCTTTCTTCCTAGAATGTCCAACGTAAATTTACCAAAACAACAGATGTGTAGAGTGTGTTAACTACAGAGGGTTTGAAATATTTGCCATCAACAAAGGCAGGAAAATAGGGAATAAGAAGAAATGATGAGACATGTCAATTACCATTAGTCTTTCTTTTGTTCTACTCACTTCATTCTGAAGTCTTCGGCAGCCAGTCTTGCATTGTCAATCTGCAAGATGAGCTGGGCATTTCCAATGCTGGCAGAAATTATCTGGCCAAATAGGGGAAGACACATGAAA-TGGGGTTGTAAAATACTAG----TATTATGT-GGGTGT-ATTTTTGAGAAGGAGTT-TTTA--GGTGATATTAACATGCT----- i canFam3.chr9 C 0 C 0 a score=11004.000000 s hg38.chr17_JH159146v1_alt 15611 4 + 278131 ATTT s panTro4.chr17 66132492 4 - 82630442 ATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24658365 4 - 73212453 ATTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47883628 4 - 81552678 ATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52996390 3 + 80904711 -TTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52518743 3 + 80997621 -TTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47564349 3 + 74645514 -TTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9830745 3 - 75148670 -TTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112674083 4 + 159171411 ATTT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39249162 4 - 61074082 ATTA i canFam3.chr9 C 0 C 0 e mm10.chr11 99420936 486 + 122082543 I a score=5601272.000000 s hg38.chr17_JH159146v1_alt 15615 1441 + 278131 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATATTGAGAAGTAAAGAAATGCAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTAGTAAATGATAAAGTGGAGTGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCTAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACTGT-AAAACATTGTAATGGTAAAAAGG------AAAAAAAAAATTCCCAAAGCGCCTCCAAAAGAG---ATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCGCTCTGTGA---AGCATCTGCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTATTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CTTTTTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CCGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGCCCTCCAAAGCTACCT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCGGAGCCACCCCCAAAGCCGGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCACAGCTGGCTCCAAAGCCAAAGGCACTTCCCCCATAACCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGC---CTATCACACTCTGCGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATGGCCTGGGGAAGGTGGCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGAAAG----CTAAACTTATATAGGCTGCAAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGAT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAATAATCGAATAATCATTTCCATTAAATATTTGTTATATGAAAAAGAAAGCTGGGTGGAGTAGAGTCTGCTTGTCATAA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGCctgtattcccagcactgcctagcgtcttgttcacagtaggaagataatgagcgattgctgaatggatACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTTAAGTTCTTCCCTGATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAGTGTAAACCATTTGTTTCCTTTGGAAAAACCAATCCAATGTAAAATCCAGTCATGATCAAGTATACCTTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGTGAAAGGTGGA-GAATAAAT-ATATTTTCCAGATGGATACT s panTro4.chr17 66132496 1432 - 82630442 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATATTGAGAAGTAAAGAAATGCAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTAGTAAATGATAAAGTGGAGTGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCTAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACTGT-AAAACATTGTAATGGTAAAAAGG------AAAAAAAAAATTCCCAAAGCGCCTCCAAAAGAG---ATCCTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCGCTCTGTGA---AGCATCTGCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CTTTTTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGCCCTCCAAAGCTACCT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACAAGCACCCAGTCCTCCTGCCATGGAACTTCCGGAGCCACCCCCAAAGCCGGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCACAGCTGGTTCCAAAGCCAAAGGCACTTCCCCCATAACCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGC---CTATCACACTCTGCGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATGGCCTGGGGAAGGTGGCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGAAAG----CTAAACTTTTATAGGCTGCAAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGAT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAATAATCGAATAATCATTTCCATTAAATATTTGTTATATGAAAAAGAAAGCTGGGTGGAGTAGAGTCTGCTTGTCATAA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGCCTGTATTCCCAGCACTGCCTA---------TCACAGTAGGAAGATAATGAGCGATTGCTGAATGGATACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTTAAGTTCTTCCCTGATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAGTGTAAACCATTTGTTTCCTTGGGAAAAACCAATCCAATGTAAAATCCAGTCATGATCAAGTATACCTTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGTGAAAGGTGGA-GAATAAAT-ACATTTTCCAGATGGATACT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24658369 1464 - 73212453 AGAGTTTAAGACAGCTTTCATTTTT-CTAAGACAA---TATCTGT-----ATAATATTGAGAAGTAAAGAAATGCAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTGGTAAATGATAAAGTGGAATGAA-------ACAACCTGGGATAAGAAAATTGCTGCAAGTACAGCCAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACCGT-AAAACATTGTAACAGTAAAAAGG------AAAAAAAAAA-TCCCAAAGCCCCTCCAAAAGAGATCATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCGCTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTACTCCAGGGTAGGAAGGCTAAATCTATTCAATTAAGATTTTTAGGCATGGTTTTCTTTTTTCTGATCCAGAAAGAAAGGCCTCCCATCATTTGCACCGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGCCCTCCAAAGCCACCT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCGGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCACAGCTGGCTCCAAAGCCAAAGGCACTTCCCCCGTAACCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACGCTCTGCGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACGTGGTGTTGTTGGAGAGATCCATGGCCTGGGGAAGGTGGCCACAACTGGAGAGGAAGTTGTGCCACGCTAAGCACAGAAAG----CTAAACTTTTATAGGCTGCAAGATGGAGTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGAT---CCT-CCCCCAGATTTTTGGCCAGCTCAACAAGTGACTGATTTATGTATAATGAAAATTCATTGATACAGAAATAATTGAATAATCGTTTCCATTAAATATTTGTTATATGAAAAAGAAAGCTGGGTGGAGTGGAGTCTGCTTGTCATAACGGAATTTTTCTTCtccaaattgagtctgttgcctgtattcccagcactgcctagcgtcttgttcacagtaggaagataatgagcgattgctgaatggatACGTTAA--ATACTTCTTCTTAAACCTTATGCTTTTTTAAGTTCTTCCCTGATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAATGTAAGCCATTTGTTTCCTTTGGAAAAACCAATCCAGTGTAAAATCCAGTCATGATCAAGCATACCTTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGTGAAAGGTAGAGGAATAAATAATATTTTCCAGATGGATACT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47883632 1414 - 81552678 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATTCTGAGAAGTAAAGAAATGCAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTGGTAAATGATAAAGTGGAATGAA-------ACAACCTGGGATGATAAAATTGCTGCAAGTACGGCCAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACCGT-AAAACATTGTAATGGTAAAAAGG------AAAAAAAAAATTCCCAAAGCCCCTCCAAAAGAGATCATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCGCTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGTTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATTGTTT--CTTTCTCTGATCCAGAAAGAAGG--CCTCCATCA-TTTC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGCCCTCCAAAGCCACCT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCGGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCACAGCTGGCTCCAAAGCCAAAGGCACTTCCCCCATAACCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGCGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATAGCCTGGGGAAGGTGGCCACAGCTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGAAAG----CTAAACTTTTATAGGCTGCGAGATGG-GTGTCACAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGAT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTGATGTATAATGAAAATTCATTGATACAGAAATAATTGAATAATCATTTCCATTAAACATTTGTTATATGAAAAAGAAAGCTGGGTGGAGTAGAGTCTG-TTGTCATAA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGTctgtattcccagcactgcctagcgtcttgttcacagtaggaagataatgagcgattgctgaatggatACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTTAAGTTCTTCCCTGATCTTTTCTGTTTGTTTCCTTTGGAAAAT--------------------------------CCAATCCACTGTAAAATCCAGTCATGATCAAGCATACCTTTTAGTGGAATACAGCTTCGGAAGCAGCTGTGAAATGCACTGGTGAAAGGTGGA-GAATAAAC-ATATTTTCCAGATGGATACG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52996393 1442 + 80904711 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATATTGAGAAGTAAAGAAATACAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTGGTAAATGATGAAATGGAATGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCCAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACTGT-AAAACATTGCAATGGTAAAAAGG---------AAAAAAATTCCCAAAGCCCCTCCAAAAGAAATCATCTTACCTTATTCCTGAGGTCTTCAATGAGTGGATAATATTTGCTGTAATCATTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CCTTTTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGTCCTCCAAAGCCACTT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCAGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCATAGCTGGATCCAAAGCCAAAGGCACTTCCCCCATAGCCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGGGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATAGCCTGGGGAA--TGTCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGGAAG----CTAACCTTTTATAGGCTGTGAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGGT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAGTAATTGAATAATCATTTCCATTAAATATTTGTTATATGAAAAAGAAAGCTGGGTGGAGTAGAGTCTACTTGTCATGA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGCctgtattcccagcactgcctagcgtcttgtacacagtaggaagataatgaacaattgctgaatggatACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTAAAATTCTTCTCTCATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAACGTAAACCATTTGTTTCCTTTGGAAAAACCAATCCGATGTAAAATCCGATCATGATCAAGCATATCTTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGCAAAAGGTGGA-GAATAAAT-ACATTTTCCAGATTGATACT i rheMac3.chr16 C 0 I 315 s macFas5.chr16 52518746 1442 + 80997621 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATATTGAGAAGTAAAGAAATACAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTGGTAAATGATGAAATGGAATGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCCAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACTGT-AAAACATTGCAATGGTAAAAAGG---------AAAAAAATTCCCAAAGCCCCTCCAAAAGAAATCATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCATTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CCTTTTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGTCCTCCAAAGCCACTT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCAGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCATAGCTGGATCCAAAGCCAAAGGCACTTCCCCCATAGCCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGGGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATAGCCTGGGGAA--TGTCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGGAAG----CTAACCTTTTATAGGCTGTGAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGGT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAGTAATTGAATAATCATTTCCATTAAATATTTGTTAAATGAAAAAGAAAGCTGGGTGGAGTAGAGTCTACTTGTCATGA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGCctgtattcccagcactgcctagcgtcttgtacacagtaggaagataatgaacaattgctgaatggatACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTAAAATTCTTCTCTCATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAACGTAAACCATTTGTTTCCTTTGGAAAAACCAATCCGATGTAAAATCCGATCATGATCAAGCATATCTTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGCAAAAGGTGGA-GAATAAAT-ACATTTTCCAGATTGATACT i macFas5.chr16 C 0 I 314 s papAnu2.chr16 47564352 1441 + 74645514 AGAGTTTAagacag-tttcattttt-ctaagaCAA---TAtctgtataaaataatattgagaagtaaagaaatacagatttcCTACAGAaagataatggaaataaaatcatttcttgGTAAATGATGAAATGGAGTGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCCAAATTGGAAAATATC-AAAGTTGTAGGTCA-TTATCACTGT-AAAACATTGCaatggtaaaaagg----------aaaaaattcccAAAGCCCCTCCAAAAGAAATCATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCATTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CCTTTTCTGAGCCAGAAAGAAGG--CCTCCATCA-TTGC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGTcctccaaagccactt------------------------------------------------------------ccacccAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCAGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCATAGCTGGGTCCAAAGCCAAAGGCACTTCCCCCATAGCCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGGGAGGAGAGACGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATAGCCTGGGGAA--TGGCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGAAAG----CTAACCTTTTATAGGCTGTGAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGGT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAGTAATTGAATAATCAtttccattaaatatttgttatatgaaaaagaaagctgGGTGGAGTAGAGTCTACTTGTCATAA-GGaatttttcttctccaaatt-AGTCTgttgtctgtattcccagcactgcCTAGCGTCTTGTACACAGCAGGAAGATAATGAACAATTGCTGAATGGATACGTTAA--ATACTTCTTCCTAAACCTTATgcttttttaaattcttctctcatcttttctgtttgtttcctttggaGAATCCAGTGTAAACCATTTGTTTCCTTTGGAAAAACCAATCCGATGTAAAATCCGATCATGATCAAGCATACCTTTTAGTAGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGCAAAAGGTgga-gaataaat-acattttccagaTTGATact i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9830748 1441 - 75148670 AGAGTTTAAGACAG-TTTCATTTTT-CTAAGACAA---TATCTGTATAAAATAATATTGAGAAGTAAAGAAATACAGATTTCCTACAGAAAGATAATGGAAATACAATCATTTCTTGGTAAATGATGAAATGGAATGAA-------ACAACCTGGGATGAGAAAATTGCTGCAAGTACAGCCAAATTGGAAAATATC-AAAGTTGTAGGTGA-TTATCACTGT-AAAACATTGCAATGGTAAAAAGG---------AAAAAAATTCCCAAAGCCCCTCCAAAAGAAA-CATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATATTTGCTGTAATCATTCTGTGA---AGCATCTCCAGTCCCAGTTCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGCACCTTATCC--AGGTAGGAAG--CTAATCTATC--ATTAAGATTTT---GCATAGTTT--CCTTTTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CTGAGAGAATACCTAGAGAGCCACCTCCTGGGCTGCC------CCCAAATCCCATCCCCAGTCCTCCAAAGCCACTT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTTCCAGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCTCCCCCATAGCTGGGTCCAAAGCCAAAGGCACTTCCCCCATAGCCACTTCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGGGAGGAGAGCCGCCGGGACAGTCCGGGGGTGCGCACTGAGAGTGACATGGTGTTGTTGGAGAGATCCATAGCCTGGGGAA--TGGCCACAACTGGAGAGGAAGTTGTGCCA--GCAAGC-CAGAAAG----CTAACCTTTTATAGGCTGTGAGATGG-GTGTCGCAGTTGAAAAGTTCACTTTCTCCACTCAAA--ATT-GGGT---CCTCCCCCCAGGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATACAGAAGTAATTGAATAATCATTTCCATTAAATATTTGTTATATGAAAAAGAAAACTGGGTGGAGTAGAGTCTACTTGTCATAA-GGAATTTTTCTTCTCCAAATT-AGTCTGTTGCctgtattcccagcactgcctagcgtcttgtacacagtaggaagataacgaacaattgctgaatggatACGTTAA--ATACTTCTTCCTAAACCTTATGCTTTTTTAAGTTCTTCTCTCATCTTTTCTGTTTGTTTCCTTTGGAAAATCCAACGTAAACCATTTGTTTCCTTTGGAAAAACCAATCCGATGTAAAATCCGATCATGATCAAGCGTACCGTTTAGTGGAATACAGCTTCAGAAGCAGCTGTGAAATGCACTGGCAAAAGGTGGA-GAATAAAT-ACATTTTCCAGATTGATACT i chlSab2.chr16 C 0 I 307 s calJac3.chr5 112674087 1439 + 159171411 AGAGTTTAAGAGAG-TTTCATTTCC-CTAAGACAA---TGTCTGTATAAAGTAATATTAAGGAGTAAAGAAATATAGATTTCCTACAGAAAGATAAAGGAAATACAATCACTTCTTGGTAAATGATAAAACGGAATGAA-------ACAACCTGGGGTGAGGAAATTGCTGCAAGTACAGCCATATTGGAAAACATC-AAAGTTGTGGGTGA-TTATCAC--T-AAAATATAATAACGGTAAAAAGG-------AAAACGAAATTCCCTAAGCCCCTCCAAACGACAACATCTTACCTTATTCCTGAGGTCTTCAATCAGTGGATAATACTTGTTGTAATCGTTCTGTGA---AGCATCTCCAGCCCCAGTTCCTCGTGTCTCATACCATTCTCGAATTTTGTTCTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCGAACCTTATCC--AGGTAGGAAG--CTAATCTATC--GTTAAGATTTT---GCATAGTTT--CTTTTTCTGATCCAGAAAGAAGG--CCTCCGTCA-TTGC-CAGAGAGAATACCTAGAGAGCCACCTCCTGGGCTCCC------CACAAATCCCATCCCCAGTCCTCCAAAGCCACCT------------------------------------------------------------CCACCCAGGGCTCTCCCATAACCAGCACCCAGTCCTCCTGCCATGGAACTCCCAGAGCCACCCCCAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGCCT---CCAGAGCTGGCTCCAAAGCCAAAGGCGCTTCCCCCATAGCCACTGCCAACACTGGAAGCAGACATGCCCCTGGGTCTGCCTGCTATCACACTCTGCGAGGAGAGCCGCCGGGGTAGTCCGGAGGTGCGCACTGAGAGAGACATGGTGTTACTGGAGAGATCCATAGCCTGGGGAAGGTGGCCACAACTG--GAGGAAGCTGTGCCA--GTAAGC-CAGAAAG----CTAACCTTTTATAGGCTGCAAGATGG-GTATCACAGTTGAAGAGTTCACTTTCTCCACTCAAA--ACTGGGGG---CCTCCCCGCAAGTTTTTGGCCAGCTCAACAAGTGAATGATTTATGTATAATGAAAATTCATTGATATAGAAATAATTGAATCATCATTTTCATAAAATATTTGTGATATGAAAAAGAAAGCTGGGTGGAGTACAGTTTGCTTGTCATAa-ggaatttttctcctccaggtt-agtctgctgcctgtatccccaggactgcctggcatcttgtacgcagtaggaagataatgaatgattgctgaatgaatACACTAA--ATACTTCCTCCTAAACCTTAAGCATTTTTAAGTCCTTCT-TCATCTTTTCTATTTGTTTCCTTTGGAAAATCCAGTGTAAACCATTTGGTTCCTTTGGAAAAACCAATCCAATGTAAAATCCAATCATGATCAAGCATACCTTATAGTGGAATACAGTTTCAGAAGCAGCTGTGAAATGCGCTGGTGAAAGGTGGA-GAATGAAT-GCATTTTCCAGATTGATACT i calJac3.chr5 C 0 C 0 s mm10.chr11 99421422 1330 + 122082543 AGGGTTCGGGACAG-CTTCATTTTA---AAAGCAAATGTATTGATTAAAAATAATGTTGATAAGTTAAGAAC-----ATTTCTTTTAGACAG----TGGAAGGACGGCCACTT-------AATGGTGAACGGAACTGTACTTCTGTGCTTCTTGAGGGGAGGAAATT-CTCCAAGTACCATCTAGTTTAAAAATATC-TAAGTTAAGAGGat-ttatttttataaaaatattgtaat----aaaatG----------AAAAGGTTTCTAAAGCCCCTCC-----------CCTTACCTTATTCTTCAAGTCTTCAATCAGTGGGTAGTATTTACTGTAATCACTCTGAGACCCAGCGTCT------CTGGTTCTCCGTGTTTCATACCACTCTCGAATTTTGTTTTCCAGTTCTGCATTAGCCTCCTCTAGAGAGCGAACCTTACCC--AGGTAGGAAG--CTAGTCTGTC--ATTTAGATTTT---GCATGGTTT--CTTTCTCAGAACCAGAAAGAAGA--CCTCCATCA-TTGC-CAGAAAAGATACACAGAGAGCCACCGCCCGAGCTTCCAGCTATCCCCATCCCTATCCCCATTCCTCCCGCGCCACCT---------------------------------------------------------------CTCAGAGGTCCCCCATAGGCAGAGCCAAG---CCCCGGCAAGCAACCTGCAGAGCCACCGCTAAAGCCAGAACTAGAACCAAACATGGAAGCAGCAGAAAAGAGGCCTCCACAGCCAACTCCAAAGCCAGAGGCCGATCCCCCATAGCCGCCGGCAACACTAGAAGCAGATGCACCCCAAGGTCTGCCTGCCGCCCCATTCTGTGAGGAAGACCTCCTGGACAGCGCAGAGGTGCAGACTGAAAGCGACATGCTGTTGCTGGAGAGGT---------------GGTGACC----CAAGAGAGACCGCAGTGCTG--GTATGC-CAGAAGGGGTCCTG--CCTTTATAGGCTGGGAGGTGG-GTGTTGCGGTTAAAGAGTTCACTCTCTGCGTTCCAA--CTC-TCGCATGCCCACCCACACCCAGTTGGCCAGCTCAGCAGGTATGTGATTTATGCATCGTGAAAATTCACTGATATAGCTATAATCGAATAACCATTACCACTAGATATCTGACACACAAGAAAGAAGGCTGGGTGGAGCAGA--TAGGCTGTCGTAA-GGAATCTGTCACCTTC------AGT----------TGTCCTCAGCACTGCCT-GTATCTTCCAGACACCAGAAGAGTGACGA-------CTGGA-----GCATTAA--GGAATCCTTCCGAAGCCCCATGCTTCCTGAAGCTCTGTCTTCCCCTCCCCTGTCTATTTCTTTCGG----TTCAGTATAAGCC-----------------------------------AACCAACCATGCTGTGGTTCTCTCTGTAGGG----ACAGTTTCAGAGGCAGATGAAGAGCGCATTCCTGGAAGGTGAG-AAACAGAG-GTGTTTTCCAAGAGGACATT i mm10.chr11 I 486 C 0 s canFam3.chr9 39249166 1479 - 61074082 AGAGTTTAAGGCAG-TTTAACTTTTAAAAAGAAGA---CATACTTGTACCATTTTATTTAAAAATTGAGAAAC----ATTTCTTGCAGAAAGTTAGTGGAAATACAGTTACTTTATGATAAATGATAGAATGAAACTAA-------ATAACCTGAGATGAG-AAATTGCTCCAAATACAGTCAAGTTGAAAGGTACCTTAAGTTTTAGATGGTTTATCACTGT-GAAATATTAGTATAGCCAAAGAGGAAAATAAAAAAATAGTTCCCAAATCCCCCTCAAAAACCATATTCTTACCTCATTCCTGAGGTCTTCGATCAATGGATAATATTTACTGTAATCACTCTGTGATCCGGGGTCTCCAGTCCCAGATCCTCGTGTTTCATACCATTCTCGAATTTTGTTTTCTAGCTCAGTATTAGCCTCTTCTAGAGCTCTAACCTTATCC--AGATAGGAAG--CCAATCTGTC--ATTAAGATTTT---GCATGGTTT--CCTTCTCTGATCCAGAAAGAAGG--CCTCCATCA-TTGC-CAGAGAGAATACCTGCAGAGCCACCTCCTGGGCTTCC------CCCAAATCCAATTCCCAGGCCTCCAAAGCCACCTCCTAGGCCTCCAAAGCCACCTCCCAGGGCTCCAAAGCCACCTCCCAGGGCTCCAGAGCCACCTCCCAGGGCTCCCCCATAAGCAGCACCCAGTCCTCCTGCAAAGGAAATTCCAGAGCCACCACCAAAGCCAGAACTAGAACCTAACATGGAAGCAGCAGAAAAGCCTCCCCCATAGCTGTCTCCAAAGCCAAGGGTGCTCCCCCCATAGCTACTTCCAACTATGGAAGCAGACGTGCCCCTGGCTCTGCCCGATGTCCCACTCTGGGAAGACAGCCGCCGGGGCAGCCCAGAGGTGCGCACTGAGAGGGACATGGTATTGCTGGAAAGATCCACAGCCCAGGGAAGGGAGCCTCAACCTGAGAGGAAGCAGTGTCA--GCAAGG-CAGAAGGG---TTGGCCTTTTATAGGTCATGAAATGG-GTGTTGCAGTTGAAAAGTTCACTCTCT-CACCCAAAATATC-ATGC---CCCCCCCCC---TTTTTGACCAGCTCAACCAGTAAAAGATTTATGCATACTGAAAACTCATTAGCATAGAAATAATTGAATAATTGTGCCTATTACATATTTGTTAAACAAAAAAGAAATCTGGGTGGAGTAGAGATAAGTTGTCACAa-gaaatttttctcttccagatt-actccattgtttgtattctctgcactgcccagtgtcttacacactgtaggaaagcaatgagtgattgttgaatggataaatTAATTTTACGTC-TCCTCAGCCTTGAGCTTCTTAAAGTTCTTCACTCACATTTCCTACTTGTTTCCTTTAGAAAACGAACTGTAAACC-----------------------------------ATCTGACCATGATCTAGTTTATATTCTAGTGGAATATAGTTTCAGAAGCAGTTGTGAAATGCATTAATGGAAGGAGAG-GAATAAAC-AAATTTTCCAGATTGATACA i canFam3.chr9 C 0 C 0 a score=48102.000000 s hg38.chr17_JH159146v1_alt 17056 13 + 278131 AGAATTTGCATTT s panTro4.chr17 66133928 13 - 82630442 AGAATTTGCATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24659833 13 - 73212453 AGAATTTGCATTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47885046 13 - 81552678 AGAATTTGCATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52998150 13 + 80904711 AGAATTTCCATTT i rheMac3.chr16 I 315 C 0 s macFas5.chr16 52520502 13 + 80997621 AGAATTTCCATTT i macFas5.chr16 I 314 C 0 s papAnu2.chr16 47565793 13 + 74645514 agaatttccattt i papAnu2.chr16 C 0 I 308 s chlSab2.chr16 9832496 13 - 75148670 AGAATTTCCATTT i chlSab2.chr16 I 307 C 0 s calJac3.chr5 112675526 13 + 159171411 GGAATTTGCATTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99422752 13 + 122082543 AGAATCTGAGCTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39250645 13 - 61074082 GGGATTTGAATTC i canFam3.chr9 C 0 C 0 a score=366982.000000 s hg38.chr17_JH159146v1_alt 17069 136 + 278131 TCAAGGATTTTAAAA-CC-----TTGGCTTTAGGATGTTGCATGTTTCTTTTCCCTCTT--------AT--------------TCTTCA-AC-TTGGAAAAGTAC--TATTTTTGAGTACAGTTGTTT--------------ATAGT-----AG-AGTTTATTAT-AGTTGTTTTAGCA----GTTTTAC-CTT s panTro4.chr17 66133941 136 - 82630442 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGATGTTGCATGTTTCTTTTCCCTCTT--------AT--------------TCTTCA-AC-TTGGAAAAGTAC--TATTTTTGAGTACAGTTGTTT--------------ATAGT-----AG-AGTTTATTAT-AGTTGTTTCAGCA----GTTTTAC-CTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24659846 157 - 73212453 TCAAGGATTTTAAAACCC-----TTGGCATTAGGTTGTTGCATGTTTCTTTTCCCTCTT--------AT--------------TCTTCACGC-TTGGAAAAGTACTATATTTTGGAGTAGAGTTGTTTAATAGNTAGAGTTGATAGT-----AGCAGTTTATTATAAGTTGTTTCAGCAG---GTTTTAC-CTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47885059 148 - 81552678 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGATGTTGCATGTTTCTTTTCCCTCTT--------AT--------------TCTTCA-AC-TTGGAAAAGTAC--TATTTTTGAGTAGAGTTgttt--atagtagagtttatagt-----ag-agtttatTAT-AGTTGTTTCAGCA----GTTTTAC-CTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52998163 148 + 80904711 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGATGTTGCACGTTTCTTTTCCCTCTG--------AT--------------TCTTCA-AC-TCCAAAAAGTAC--TATTTTTGAGTAGAGTTGTTT--GTAGCAGAGTTTATAGT-----AG-AGTTTATCAT-CGTTGTTTAAGCA----GTTTTGC-Ctt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52520515 148 + 80997621 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGATGTTGCACGTTTCTTTTCCCTCTG--------AT--------------TCTTCA-AC-TCCAAAAAGTAC--TATTTTTGAGTAGAGTTGTTT--GTAGCAGAGTTTATAGT-----AG-AGTTTATCAT-CGTTGTTTAAGCA----GTTTTGC-CTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47566114 148 + 74645514 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGACGTTGCACGTTTCTTTTCCCTCTG--------AT--------------TCTTCA-AA-TCCAAAAAGTAC--TATTTTTGAGTAGAGTTGTTT--GTAGCAGAGTTTATAGT-----AG-AGTTTATTAT-CGTTGTTTAAGCA----GTTTTGC-CTT i papAnu2.chr16 I 308 C 0 s chlSab2.chr16 9832509 148 - 75148670 TCAAGGATTTTAAAA-CC-----TTGGCATTAGGATGTTGCACGTTTCTTTTCCCTCTG--------AT--------------TCTTCA-AC-TCCAAAAAGTAC--TATTTTTGAGTAGAGTTgttt--gtagcagagtttatagc-----ag-agtttatTAT-CGTTGTTTAAGCA----GTTTTGC-CTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112675539 119 + 159171411 TCAAGGATTTTAAAA-CC-----TTGCCATTAGGATGTTGCGTGGTTTTTTTCCCTCTG--------AT--------------TCTTCA-AT-TCTGCAAAGTAC--TATTTTTGAGTAGAG-------------------------------------TATTAT-GGTTGTTTCAGCA----GTCCTGC-CTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99422765 153 + 122082543 GCAAGGCTCTGAGAG-CA-----TCTGCTGTAAGGAGTTGTGTGGTTCTTGCTTTTCTGAAAATGGAAC--------------ACTTAA-AC-ATGGGAGCCAGC--TGTTTGGAAGTCGAA-CATTT--------------ATAGTTAACAAA-AGATTGGCAT-TCTCAGTGAACCATGACGCTGGGCTCTG i mm10.chr11 C 0 C 0 s canFam3.chr9 39250658 139 - 61074082 TCAAGGATTTTAAAA-CCTCAGATTAGGATCAGGATTTTGCATAGTTTCTTTCTTTCTG--------ATTCAGAAAGAGGACCTCTTAA-ACATTGAAAGAATGC--TATTTTTGACTAG--------------------------------AA-----TATTAT-AGTATCCTCAGCA----GCTCTTC-CTT i canFam3.chr9 C 0 I 126 a score=1063048.000000 s hg38.chr17_JH159146v1_alt 17205 331 + 278131 GTCTGATTGCTC--------ACTGCTCTACACTCAGCATTTACTATGTTTATTCC-TTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTAGTTGAATGGATTGTGTAAACACTTCAGATTTTGTTGCCATTATCAATAAGGAGA---------------AAGTGGAAACACAGTTCAAATTAAGAAATGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACTGCTATGATGAAAAAGGAtaaa-ttttacaatatagaata---aattaa-atgttatattttaaactttGTTGTGAAAACTTTGCAAAGCGTGCTTCAAGGAATTATATCCAG s panTro4.chr17 66134077 331 - 82630442 GTCTGATTGCTC--------ACTGCTCTACACTCAGCATTTACTACGTTTATTCC-TTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTAGTTGAATGGATTGTGTAAACACTTCAGATTTTATTGCCATTATCAATAAGGAGA---------------AAGTGGAAACACAGTTCAAATTAAGAAATGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCGTTTCAGTTGACTGCGATGATGAAAAAGGataaa-ttttacaatatagaata---aattaa-atgttatattttaaaCTTTGTTGTGAAAACTTTGCAAAGCGTGCTTCAAGGAATTATATCCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24660003 333 - 73212453 GTCTGATTGCTC--------ACTGCTCTACACTCAGCACTTACTATGTTTATTCCNTTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTAGTTGAATGGATCGTGTAAACACTTCAGGTTTTATTGCCATTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAATGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACGGCTATGATGAAAAAGGataaatttttacaatatagaata---aattaa-atgttatattttaaaCTTTGTTGTGAAAACTTTGCAAAGCATGCTTCAAGGAATTGTATCCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47885207 331 - 81552678 GTCTGATTGCTC--------ACTGCTCTACACTCAGCACTTACTATATTTATTCC-TTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTAGTTGAATGGATTGTGTAAACACTTCAGGTTTTATTGCCATTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAATGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACTGCTATGATGAAAAGGGAtaaa-ttttacaatatagaata---aattaa-atgttatattttaaactttGTTGTGAAAACTTTGCAAAGCGTGCTTCAAGGAATTGTATCCAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52998311 328 + 80904711 gtctgattgctc--------actgctctacactcagcac---ttatgtttattcc-ttcaacagatattgcctgtaatggttgctcaataaatgtgttgactggttgaatGGACTGTGTGAACACTTCAGGTTTTATTGCCGTTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAGTGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACTGCTATGATGAAAAAGGATAAA-TTATACAATATAGAATA---CATTGG-ATGTTATATTTTAAACTTTGCTGTGAAAACTTTGCAAAGCGTACTTCAAGGAATTGTATCCAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52520663 328 + 80997621 GTCTGATTGCTC--------ACTGCTCTACACTCAGCAC---TTATGTTTATTCC-TTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTGGTTGAATGGACTGTGTGAACACTTCAGGTTTTATTGCCGTTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAGTGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACTGCTATGATGAAAAAGGATAAA-TTATACAATATAGAATA---CATTGG-ATGTTATATTTTAAACTTTGCTGTGAAAACTTTGCAAAGCGTACTTCAAGGAATTGTATCCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47566262 331 + 74645514 GTCTGATTGCTC--------ACTGCTCTACACTCAGCACTTATTATGTTTATTCC-TTCAACAGGTATTGCCTGTAAtggttgctcaataaatgtgttgaCTGGTTGAATGGATTGTGTGAACACTTTAGGTTTTATTGCCGTTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAGTGATTAAAACCCCAAGTTTAAGAGGCTAGTGAACCATTTCAGTTGACTGCTATGATGAAAAAggttaaa-ttatataatatagaata---cattaa-atgttatattttaaactttgctGTGAAAACTTTGCAAAGCGTACTTCAAGGAATTATAtccag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9832657 331 - 75148670 GTCTGATTGCTC--------ACTGCTCTACACTCAGCACTTATTATGTTTATTCC-TTCAACAGATATTGCCTGTAATGGTTGCTCAATAAATGTGTTGACTGGTTGAATGGATTGTGTGAACACTTCAGGTTTTATTGCCGTTATCAATAAGGAGA---------------AAGTGGAAACACAGTTTAAATTAAGAAGTGATTAAAACCCCAAGTTTAAGAGGCTGGTGAACCATTTCAGTTGACTGCTGTGATGAAAAAGGATAAA-TTATACAATATAGAATA---AATTGA-ATGTTATATTTTAAACTTTGCTGTGAAAACTTTGCAAAGCGTACTTCAAGGAATTGTATCCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112675658 340 + 159171411 GTCTGATTGCCCACTGCTCTACTGCTCTACACTCAGCActtactatgtttattcc-ttcaacagatatgacccatagtgggtgctcaattaatgtgttgactagttgaatGGATTGTGTAAACACTTCAGGTTTTATTGCTGTTATCAATAAGGAGA---------------AAGTAGAAACACAGTTTAAATTAAGAAATGATTAAAACCCCAAGTTTAAGAAGCTAGCAAACCATTTCAGTTGACTGCTATAATGTAAAAGGATAAG-TTTTACATTATAGAATA---AACTAACAAATTATATTTTAAACTTTGTTGTGAAAAGCATGCAAAGCATGCTTCAAGGAATTGTATCCAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99422918 309 + 122082543 GGCTGAATGCTT--------ATTGC------------------------TATTTC-TTCAAT-GGCATTACCTGTGAGAATTTTGTAGTAAATCTGTTG----GCTGAATGGATAGTAT-ATCACCTACAGTGTT-CCACCATTAACAAAATacatacacacacacatacacacacgcaaacacTGTCCAAAATAAGAAATGATTAAAACTCCATGCTTCAGAAGCCAGAGAGTCATTTCGGTGG---------ATGGAGAGGAATGCATTTTTGCATCACAGAACAGCCAATGGG-AGGCTGTCTTATTAAATTC-CTGTGAATTCTTTGGGAAGCATGATCCTGAGAATTTTATCCAg i mm10.chr11 C 0 I 70 e canFam3.chr9 39250797 126 - 61074082 I a score=1993313.000000 s hg38.chr17_JH159146v1_alt 17536 695 + 278131 TATCTTTAATTTTTAAGACATAAAGTTCTTATACTTTCTTGTTTGGTATATTATTTATCTTTGAAATTGATATGGCTTATATATTGAACATGAGAAC--TAACGTTCTTACAGGAAATGCATTAACTTGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGAAA--CCGAGTA-GTACAATT-CCAGGGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATG-TTTTCTTTGAGATGATGG-CCCAATTCTCTACATGTCTCATTGCAAAATAGTTCTATAG-----TTT-----TTTTTT------AAATATAGCTCTCTATGTATTTATAGTAGGAAATTTAGAAGATGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATATACTTATCTATCACTTGAACTTTAATAATTGGGTACAG-AACATGGATTGTGGATTCTTCGAAATCCTTTGTTGGATTCAGATTTCTAAATTCAGTTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATAACAG--TTTTTTTGCAAAGATGTTTATA-CTGAATTTTATTAATAAGGT-ATACACTGACTGTGTGTGCTATAG s panTro4.chr17 66134408 694 - 82630442 TATCTTTAATTTTTAAGACATAAAGTTCTTATACTTTCTTGTTTGGTATATTATTTATCTTTGAAATTGATATGGCTTATATATTGAACATGAGAAC--TAACGTTCTTACAGGAAATGCATTAACTTGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGAAA--CCGAGTA-GTACAATT-CCAGGGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATG-TTTTCTTTGAGATGATGG-CCCAATTCTCTACATGTCTCATTGCAAAATAGCTCTATAG-----TTT-----TTTTTT------AAATATAGCTCTCTATGTATTTATTGTAGGAAATTTAGAAGATGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATATAATTATCTATCACTTGAACTTTAATAATTGGGTACAG-AACATGGATTGTGGATTCTTCGAAATTCTTTGTTGGATTCAGATTTCTAAATTCAGTTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATAACAG--TTTTTT-GCAAAGATGTTTATA-CTGAATTTTATTAATAAGGT-ATACACTGACTGTGTGTGCTATAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24660336 716 - 73212453 TATCTTTAATTTTTAAGACATAAAGTTCTTACACTTTCTTGTGTGATATATTATTTGTCTTTGAAATTGATATGGCTTATATATTGAACATGAGAAC--TAACATTCTTACAGGAAATGCATTAACTTGAAAGAAGTCTGCTTTCAGAGAGAGTTGGTAGATACCTGGGAAACCCGAGTACTTACAATTCCCAGAGTGGGTGGAATTCCCTTAGGAATTTAAATTTGTGAGCATTTTGATTGGGATAAGGAAGGAATAAGGATTTTTCTTTTTACATGTTTTTCTTTGAGATGATGGCCCCAAGCCTCTAAACATCTCACTGCAAAATAGTTCTGTAG----TTTT-----TTTTTT------AAATATAGCTCTCTATGTATTTATTGTAGGAAATTTAGAAGATGCAGAAAACATAAAGAAGATGTACGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCGATGTAAGATTTTATAATCTGCTTTTCTCTTAAGATTATATAATTATCTATCACTTGAACTTTAATAATTAGGTACAGAAAAATGGATTGTGGATTCTTCGAAATTCTTTGTTGGATTCAGATTTCTAAATTCAGTTTGCTCTGTATTTGATGATAGGAAAATAAAAATTTCTGGGTGTAAAATAACAGGTTTTTTTTGCAAAGATGTTTATATCTGAATTTTATTAATAAGGTCATACACTGACTGTGTGTGCTATAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47885538 696 - 81552678 TATCTTTAATTTTTAAGACATAAAGTTCTTATACTTTCTTGTTTGATATATTATTTATCTTTGAAATTGATATGGCTTATATATTGAACATGAGAAC--TAACGCTCTTACAGGAAATGCATTAACTTGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGGAA--CCAAGTA-GTATAATT-CCAGAGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATA-TTTTCTTTGAGATGATGG-CCCAAGTCTCTACATGTCTCATTGCCAAATAATTCTATAG----TTTT-----TTAAAA------AAATATAGCTCTCTATGTATTTATTGTAGGAAATTTAGAAGATGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATATAATTATCTATCACTTGAACTTTAATAATTGGGTACAG-AATATGGATTGTGGATTCTTCGAAATTCTTTGTTGGATTCAGATTTCTAAATTCAGTTTGCTCTGTATTTGGTGATAGGAAA--TAAAATTTCTGGGTGT-AAATAACAG--TTTTTTTGCAAAGATGTTTATA-CTGAATTTTATTAGTAAGGT-ATACACTGACTGTGTGTGCTGTCG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52998639 693 + 80904711 TATTTTTAATTTTTAAGACATAAAGTTCTTGTACTTTCTTGTTTGATGTATTATTTACCTTTGAAATTGATATGGCTTGTATATTGAACATGAAAAC--TAACGTTCTTGAAGGAAATGCATTAAC-TGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGAAA--CCAAGTA-GTACAATT-CCAGGGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATG-TTTTCTTTGAGATGATGG-CCCAAGTCTCTACATGTCTCATTGCAAAATAGTTCTATAG--TTTTTT-----TTTTTT-------AATGTAGCCCTCTATGTATTTATTGCAGGAAATTTAGAAGGTGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATGTAGTTATCTATCACTTGAATTTTAATAATTGGGTACAG-AACATGGATTATGGATTCTTGGAAATTCTTTATTGGATTCAAATTTCCAAAATCAGGTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATA--AG--TTTTTTTGCGAAGATGTTTATA-CTG-ATTTCATTAATAAGGT-ATACACTGACTGTGTGTACTATAG i rheMac3.chr16 C 0 M 162 s macFas5.chr16 52520991 695 + 80997621 TATTTTTAATTTTTAAGACATAAAGTTCTTGTACTTTCTTGTTTGATGTATTATTTACCTTTGAAATTGATATGGCTTGTATATTGAACATGAAAAC--TAACGTTCTTGAAGGAAATGCATTAAC-TGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGAAA--CCAAGTA-GTACAATT-CCAGGGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATG-TTTTCTTTGAGATGATGG-CCCAAGTCTCTACATGTCTCATTGCAAAATAGTTCTATAGTTTTTTTT-----TTTTTT-------AATGTAGCCCTCTATGTATTTATTGCAGGAAATTTAGAAGGTGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATGTAGTTATCTATCACTTGAATTTTAATAATTGGGTACAG-AACATGGATTATGGATTCTTGGAAATTCATTATTGGATTCAAATTTCCAAATTCAGGTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATA--AG--TTTTTTTGCGAAGATGTTTATA-CTG-ATTTCATTAATAAGGT-ATACACTGACTGTGTGTACTATAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47566593 703 + 74645514 tattttaaatttttaagacatAAAGTTCTTGTACTTTCTTGTTTGATGTATTATTTACCTTTGAAGTTGATATGGCTTGTATATTGAACATGAAAAC--TAATGTTCGTGTAGGAAATGCATTAAC-TGAAAGAAGCCTGCTTTCAGAGAGAGTT-GTAGATACCTGGAAA--CCAAGCA-GTACAATT-CCAGGGT-GGTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAataaggatttttc-ttttacatg-ttttctttgagatgatgG-CCCAAGTCTCTACATGTCTCATTGCAAAATAGTTCTAT----TTATAtagcccttttttaaaaaaaaatatagccCTCTATGTATTTATTGCAGGAAATTTAGAAGATgcagaaaacataaagaagatgtatgtatatatgagtattttatatacattttttaacataattgattcaatataatattttataatctgcTTTTCTCTTAAGATTATATAGTTATCTATCACTTGAATTTTAATAATTGGGTACAG-AACATGGATTGTGGATTCTTGGAAATTCTTTATTGGATTCAAATTTCCAAAATCAGGTTGCTCTGTATTTGATgataggaaa--taaaatttctgggTGT-AAATA--AG--tttttttGCAAAGATGTTTATA-CTG-ATTTCATTAATAAGGT-ATGCACTAACTGTGTGTGCTATAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9832988 696 - 75148670 TATTTTTAATTTTTAAGACATAAAGTTCTTGTACTTTCTTGTTTGATGTATTATTTACCTTTGAAATTGATATGGCTTGTATATTGAACATGAAAAC--TAACGTTCTTGAAGGAAATGCATTAAC-TGAAAGAAGCCTGCTTTCAGAGAGAGTT-TTAGATACCTGGAAA--CCAAGTA-GTACAATT-CCAGGGT-GCTGGAATTCCCTTAGGAATTTAAA-TTGTGAGCATTTTGATT-GGATAA-GAAGGAATAAGGATTTTTC-TTTTACATG-TTTTCTTTGAGATGATGG-CCCAAGTCTCTACATGTCTCATTGCAAAATAGTTCTATAGTTTTTTTT-----TTTTTT------AAATGTAGCCCTCTATGTATTTATTGCAGGAAATTTAGAAGGTGCAGAAAACATAAAGAAGATGTATGTATATATGAGTATTTTATATACATTTTTGAACATAATTGATTCAATATAAGATTTTATAATCTGCTTTTCTCTTAAGATTATGTAGTTATCTATCACTTGAATTTTAATAATTGGGTACAG-AACATGGATTATGGATTCTTGGAAATTCATTATTGGATTCAAATTTCCAAATTCAGGTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATA--AG--TTTTTTTGTGAAGATGTTTATA-CTG-ATTTCATTAATAAGGT-ATACACTGACTGTGTGTACTACAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112675998 694 + 159171411 TGTCTTTAGTTTTTAAGACATAAAATTCTTATACTTTCTTGTTTGATATACTATTTACCTTTGAAAATGATATGGCTTATACATTGGACATGAAAACAATAATGTTCTTATGGGAAATGCATTAACCTGAAAGAAGCCTGCTTTCAGTGAGAGTT-GCAGATA-CTGAAAA--CAAAGTA-GCACACTT-CCAGGGT-GATGGAATTCCCTTAGGAATTTAAA-TTTTGAGCGTTTTGATT-GGATAA-GAAGGAATAAGCATTTTTC-TTTTACACG-TTTTCTTTGAGATGATGA-CCCAAGTCTCTACATGTCTCACTGCAAAATAGTTCTATAG-----TTA-----GTTTTT----AGAAATATAGCTCTCTATGTATTTATCGTAGGAAATTTGGAAGATGCAGAAAACATAAAGAAGATGTATGTATATATGAGTCTCTTATATACATTTTTGAATGTAATTGATTCAATATAAGATTTTACAATCTGCTTTTCTCTTAACTTTATATAATCAACTATCACTTGAACCTTAATAATTGGGTCTAG-AATATGGATTGTAGATTCTTGGAAATTCTTTGTTGGGTTCAGATTTCTAAATTCAGTTTGCTCTGTATTTGATGATAGGAAA--TAAAATTTCTGGGTGT-AAATAACAG--TTTCTTTGTGAAGATGTTTATA-CTGAATTTTATTAATAAGGT-ATAC----ACTGTGTGTACTATAG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39250797 126 - 61074082 I e mm10.chr11 99423227 70 + 122082543 I a score=358758.000000 s hg38.chr17_JH159146v1_alt 18231 155 + 278131 ACATATATGTATTTTGACTAGAATGGATTTATTGAAAT-AAAATACATTAAAATCATTGTAATGATACATTTCCTACCTCGTGGGAAACAGGGCCTTCATTTCTCCATCAGGGACCTCTGTTTGCTTATAGATGGCCACTAAAACTCCTTTTCAAT s panTro4.chr17 66135102 155 - 82630442 ACATATATGTATTTTGACTAGAATGGATTTATTGAAAT-AAAATACATTAAAATCATTGTAACGATACATTTCCTACCTCGTGGGAAACAGGGCCTTCATTTCTCCATCAGGGACCTCTGTTTGCTTATAGATGGCCACTAAAACTCCTTTTCAAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24661052 156 - 73212453 ACATATATGTATTTTGACTAGAATGGATTTATTGAAATAAAAATACATTAAAATCATTGTAATGATACAGTTCCTACCTCGTGGGAAACAGGGCCTTCATTTCTCCATCAGGGACCTCTGTTTGCTTATAGATGACCACTAAAACTCCTTTTCAGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47886234 155 - 81552678 ACATATATGTATTTTGACTAGAATGGATTTATTGAAAT-AAAATACATTAAAATCATTGTAACGATAAAGTTCCTACCTCGTGGGAAACAGGGCCCTCATTTCTCCATCAGGGACCTCTGTTTGCTTATAGATGGCCACTAAAACTCCTTTTCAAT i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52521686 154 + 80997621 ACATATATGTATTTTGACTAGAATGGATTTATTGAAAT-AAAATACATTAAAATCATTGTAAAGATACAGTTCCTGCCTTGTGGGAAACAGGGCCTTCATTTCTCCATCAGTGACCTCTGTTTCCTTATATATGGCCACTAAAACTCCTTTTCAA- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47567296 155 + 74645514 ACATATATGTATTTTGACTAGAATggatttattgaaat-aaaatacattaaaatcatTGTAAAGATACAGTTCCTGCCTTGTGAGAAACAGGGCCTTCATTTCTCCATCAGCGACCTCTATTTCCTTATATATGGCCACTAAAACTCCTTTTCAAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9833684 155 - 75148670 ACATATATGTATTTTGACTAGAATGGATTTTTTGAAAT-AAAATACATTAAAATCATTGTAAAGATACAGTTCCTGCCTTGTGGGAAACAGGGCCTTCATTTCTCCATCAGCGACCTCTGTTTCCTTATATATGGCCACTAAAACTCCTTTTCAAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112676692 155 + 159171411 ACATATATGTATTTTGACTAGAATGGATTTATTGAAAT-AAAATACACTAAAATCATTATAAAGATACAGTTCCTACCTCTTGGGAAATACAGGCTTCAGTTCTTCAAAAGGGACCTCTGTTTTCTTATAGATGGCCACTAAAACTCCTTTCCAAT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39250797 126 - 61074082 I e mm10.chr11 99423227 70 + 122082543 I e rheMac3.chr16 52999332 162 + 80904711 M a score=2668531.000000 s hg38.chr17_JH159146v1_alt 18386 928 + 278131 TT-GGTATATTTGGATTCTGCGTTTTATTTTATTCTAAGGAAAAGTTTTAAAAATAT-CACAAGTATTCTAGATTTCTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATACCTTTCATAAAAA-GGAAGATTTTTATTTTTATTTATTTACCACTACTGGAttttttttaaaaa--atttcaactttaattttagattcaggaggtacatgtgcaggtttgttacgtgtgtatatttcatgatgctgaggtttggggtacgactcatctcatcacccaggtagt-aagcatagtacccaatagttgtttaacctttgctccccacagtaattcccagtgtctattgttggcattctatatgtccatgagtgcccaa-tgtttaat--tcccaAAAAGG-----------AGGCTTTCTATACATTTTAAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACCTGTGAGATCATTGAGATGTTACTTACTTAATACAAACAATCAACCATAAAAATTAGCAAATATGTGGCTATTGTTTAAGGTTTTTCCATAAGCATATGCAATACTTTTTGTTTCTCTTACTAAAACAATAACCTGATTTTTTTGGACACTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATTAAATCAAGAATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTAGGTCTGCTGTTACCTCCATTCTTCAAtg-tctagtccatttgcccagtgtcttggacaaagtcagcattc---aatatatgcttattgaTTTCT-CTCTTGATAAATCAAGCTGCTGGGCCATTAATGTGTGTTATGTATGAGGAAATTTTTCCAAAATCAAAAAAGAGTGTATCAAT s panTro4.chr17 66135257 927 - 82630442 TT-GGTATATTTGGATTCTGCGTTTTATTTTATTCTAAGGAAAAGTTTTAAAAATAT-CACAAGTATTCTAGATTTCTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATACCTTTCATAAAAA-GGAAGatttttatttttatttatttaCCACTACTGGAttttttttaaaaa---tttcaactttaattttagattcaggaggtacatgtgcaggtttattacgtgtatatatttcatgatgctgaggtttggggtacgactcatttcatcacccaggtagt-aagcatagtacccaatagttgtttaacctttgctccccacagtaattcccagtgtctattgttggcattctatatgtccatgagtgcccaa-tgtttaac--tcccaAAAAGG-----------AGGCTTTCTATACATTTTAAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACCTGTGAGATCATTGAGATGTTACTTACTTAATACAAACAATCAACCATAAAAATTAGCAAATATGTGGCTATTGTTTAAGGTTTTTCCATAAGCATATGCAATACTTTTTGTTTCTCTTACTAAAACAATAACCTGATTTTTTTGGACACTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTCTTTGAAAATTAAATCAAGAATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTGTTACCTCCATTCTTCAAtg-tctagtccatttgcccagtgtcttggacaaagtcagcattc---aatatatgcttattgaTTTCT-CTCTTGATAAATCAAGCTGCTGGGCCATTAATGTGTGTTATGTATGAGGAAATTTTTCCAAAATCAAAAAAGAGTGTATCAAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24661208 943 - 73212453 TTGGGTATATTTGGATTCTGCGTTTTA-TTTATTCTAAGGAAAAGTTTAAAAAATATCCACAAGTATTCTCGATTTCTAAAATAAAATTGAA---TTATTTCATTTAATAATACATACCTTTTATAAAAAGGGAAGatttttatttttatttatttaCCATTACTGGAGTTTTTAAAAAAAAAAtttcaacttttattttagattcaggaggtacatgtgcaggtttgttacgtgtatatacttcatgatgctgaggttt-gggtacaactcatctcatcaactaggtagtaaagcatagtacccaatagttgtttaacctttgctccccacagtaattcccagtatctattgttggcattctatatgtccatgagtgcccagttgtttaacctcccCAAAAAGGAGGCTTTTAGAAGGCTTTCTATACATTTTAAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATCCCTGTGAGATCATTGAGATGTTACTTACTTAATGCAAACAATTAACCATAAAAATTAGCAAATATTTGGCTATTGTTTAAGGTTTTTCCATAAGCATATGCAGTACTTTTTGTTTCTCTTACTAAAACAATAACCTGATTTTTTTGGACATTCCAAAG--AGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATGAAATTAAGTATTTCAACCAAGCCAACATGAAAGTATTCAAGTGCTGGGTCTGCTGTTATCTCCATCTTTCAATGTTCTAGTCCATTTGcccagtgtcttggacaaagtcagcattc---aatatatgcttattgaTTTCTGCTCTTGATAAATCAAGCTGCTGGGCCATTAATGTGTGTTATGTATGAGGAAATTTTTCCAAAATTAAAAAAGAGTGTATCAAT i ponAbe2.chr17 C 0 I 5 s nomLeu3.chr19 47886389 931 - 81552678 TT-GGTATATTTGGATTCTGCATTTTATTTTATTCTAAGGAAAAGTTTTAAAAATAT-CACAAGTATTCTAGATTTCTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATACCTTTCATAAAAA-GGAAGATTTTTATTTTTATTTATTTACCATTACTGGATTTTTTAAAAAAA--Atttcaacttttattttagattcaggaggtacatgtgcaggtttgttacgtgtatatacctcatgatgctgaggttt-gggtacaactcatctcatcacccaggcagt-aagcatagtactgaatagttgtttaacttttgctccccacagtaattcccagtgtctattgttggcattctatatgtccatgactgcccaa-tgtttaac--tcccaAAAAGGAGGCTTTTAGAAGGCTTTCCATACGTTTTAAAGTGGAGATTGAACCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACCTGTGAGATCATTGAGATG----TTACTTAATACAAACAATTAACCATAAAAATTAGCAAATATTTGGCTATTGTTTAAGGTTTTTCCATAAGCATATGCAGTACTTTTTGTTTCTCTTACTAAAACAATAACCTGATTTTTTTGGACATTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATTAAATCAAGTATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTGTTATCTCCAT-CTTCAAtg-tctagtccatttgcccagtgtcttggacaaagtcagcattc---aatatatgcttattgaTTTCT-CTCTTGATAAATCAAGCTGCTGGGCCATTAATGTGTGTTATGCATGAGGAAATTTTTCCAAAATTAAAAA--AGTGTATCAAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 52999497 931 + 80904711 TT-GGTATATTTGGATTCTGTGTTTTATTTTATTCTAAGGAAAAGTTTTTAAAATAT--GCAAGTGTTATAGATTTCTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATAACTTTCATAAAAA-GGAAGATTTTTATTTTTATTTACTTACCATTACTGGATT---AAAAAAAATAAtttcaactcttattttagattcaggaggtacatgtgcaggtttgttacgtgtgtatatttcatgatgctgaagtttggggtacaactcatctcatcatccaggcagt-aagcatagtacccaacagttttttaacctttgctccccacagtaattcccagtgtctgttgttgccattctgtatgtccatgagtgctcga-tgtttaac--tcccCAAAAGGAGGCTTTTAGAAGGCTTTCTATACATTTGTAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACTTGTGAGATCATTGAGATGC----TACTTAATACAAACAATTAACCATAATAATTAGCAAATACTTGGCCATCGTTTAGGGTTTTTCCATAAGCGTATGCAGTACTTTTTGTTTCTCTTACTAAAATAATAACATGATTTTTTTGGACATTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATTAAATCAAGTATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTATTATCTCCAT-CTTCAATG-TCTGGTCCATTTGCCCAGTGTCTTGGACAAAGTCAGCATTC---AATATATGCTTCTTGATTTCT-CTCTTGATAAATCAAACTGCTGGGTCATTAGTGTGTGTTATGTATGAGGAAATTTTTCCAAAATTAAAAA-GAGTGTATCAAT i rheMac3.chr16 M 162 C 0 s macFas5.chr16 52521840 931 + 80997621 TT-GGTATATTTGGATTCTGTGTTTTATTTTATTCTAAGGAAAAGTTTTTAAAATAT--GCAAGTATTATAGATTTCTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATAACTTTCATAAAAA-GGAAGATTTTTATTTTTATTTACTTACCATTACTGGATT---AAAAAAAATAAtttcaactcttattttagattcaggaggtacatgtgcaggtttgttacgtgtgtatatttcatgatgctgaagtttggggtacaactcatctcatcacccaggcagt-aagcatagtacccaacagttttttaacctttgctccccacagtaattcccagtgtctattgttgccattctgtatgtccatgagtgctcga-tgtttaac--tcccCAAAAGGAGGCTTTTAGAAGGCTTTCTATACATTTGTAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACTTGTGAGATCATTGAGATGC----TACTTAATACAAACAATTAACCATAATAATTAGCAAATACTTGGCCATCGTTTAGGGTTTTTCCATAAGCGTATGCAGTACTTTTTGTTTCTCTTACTAAAATAATAACATGATTTTTTTGGACATTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATTAAATCAAGTATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTATTATCTCCAT-CTTCAATG-TCTGGTCCATTTGCCCAGTGTCTTGGACAAAGTCAGCATTC---AATATATGCTTCTTGATTTCT-CTCTTGATAAATCAAACTGCTGGGTCATTAGTGTGTGTTATGTATGAGGAAATTTTTCCAAAATTAAAAA-GAGTGTATCAAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47567451 934 + 74645514 TT-GGTATATTTggattctgtgttttattttattctaaggaaaagtttttaaaatat--ataagtattctagatttctaaaataaaattgaattcttATTTGATTTAATAATACATAACtttcataaaaa-ggaatgtttttatttttatttacttaccattactggatt----aaaaaaataatttcaactcttattttagattcaggaagtatatgtgcaggtttgttatgtgtgtgtatttcatgaTGCTGCAGTTTGGGGTACAACTCatctcatcacccaggcagt-aagcatagtacccaacagtttttTAACCTTTGCTCCCCACAGTaattcccagtgtctattgttgccattcTGTATGTCCATGAGTGCCCGA-TGTTTAAC--TCCCCAAAAGGAGGCTTTTAGAAGGCTTTCTATACATTTGTAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACCTGTGAGACCATTGAGATGCTACTTACTTAATACAAACAATTAACCATAATAATTAGCAAATACTTGGCCATTGTTTAGGGTTTTTCCATAAGCGTATGCAgtactttttgtttctcttactAAAATAATAACCTGAtttttttGGACATTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGTAACTATTACACAACTTGAATTATGTCAAAATGATGTGgtctttttgaaaattaaatcaaGTATTTCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTGTTATCTCCAT-CTTCAATG-TCTGGTCCATTTGCCCAGTGTCTTGGACAAAGTCAGCATTC---AATATATGCTTCTTGATTTCT-CTCTTGATAAATCAAACTGCTGGGTCGTTAATGTGTGTTATGTATGaggaaatttttccaaaattaaaaa-gagtGTATCAAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9833839 936 - 75148670 TT-GGTATATTTGGATTCTGTGTTTTATTTTATTCTAAGGAAAAGTTTTTAAAATAT--ACAAGTATTATAGATTTCTAAAATAAAATTGAATTCTTATTTGTTTTAATAATACATAACTTTCATAAAAA-GGAAGATTTTTATTTTTATTTACTTACCATTACTGGATT--AAAAAAAAATAAtttcaactcttattttagattcaggaggtacatgtgcaggtttgttacatgtgtatatttcatgatactgaagtttgaggtacaactcatctcatcacccaggcagt-aagcatagtacccaacagttttttaacctttgctcccaacagtaattcccagtgtctattgttgccattctgtatgtccatgagtgcttga-tgtttaac--tcccCAAAAGGAGGCTTTTAGAAGGCTTTCTATACATTTTTAAGTGGAGATTGAATCTATCTGGTAAAGATTAATTTCTCAGCAAAATTATTGGATACTTGTGAGATCATTGAGATGCTACTTACTTAATACAAACAATTAACCATAATAATTAGCAAATACTTGGCCATTGTTTAGGGTTTTTCCATAAGCGTATGCAGTACTTTTTGTTTCTCTTACTAAAATAATAACCTGATTTTTTTGGACATTTCAATAGCAGAGATAATATGTGAAGTAAGCCTGCAACTGTTACACAACTTGAATTATGTCAAAATGATGTGGTCTTTTTGAAAATTAAATCAAGTATATCAACCAAGCCAACATGAAAGTATTCAAGTACTGGGTCTGCTGTTATCTCCAT-CTTCAATG-TCTGGTCCATTTGCCCAGTGTCTTGGACAAAGTCAGCATTC---AATATATGCTTCTTGATTTCT-CTCTTGATAAATCAAACTGCTGGGTCATTAATGTGTGTTATGTATGAGGAAATTTTTCCAAAATTAAAAA-GAGTGTATCAAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112676847 920 + 159171411 TT-GGTATATTTGGATTCTGTGTTTTATTTTACTCAAAAGAAAACTTTTTAAAACAT-CACAAGTATTCTAGATTTTTAAAATAAAATTGAATTCTTATTTGATTTAATAATACATGCCTTTCACAAAAA-GGAAGATTTTTA--TTTATTTATT------TACTGGATA--TTAAAAAAATAACttcaactcttattttagattcaggaagtacatgtaccggtttgttatgtgtgtatatttcatgatgctgaggtttggggtacacttgatctcatcacctaggcagt-aagcataataccaaatagtttttaaatgtttcctccccccagtagttcccagtgtctattgttgccattctgtaggtccatgaatgcccaa-tggctagc--tcctaAAAAGGAGACTTCTAGAAGGCTCTCTATACATTTTAAAGTGGAGATTGAATCTATCTGGTAAGGATTAATTTCTCAGCCAAATTATTGGATCACAGTGAGATCACTGAGACGTTACTTACTTAATAAAAACAATTAATCATAATAATTAGCTG---------TAATAGTTAAGGTTTTTCCATAAGCATGCGCAGCTCTTTTTGTTTCTCTTACTAAAACAATAAGTTGGTTTTTTT-GACATTTCAATAGCAGAAATAATATGTGAAGTAAGCCTCTAACTCTTACACAGCTTGCATTATGTGAAAATGATGTGGTCTTTTTGAAAATCAAATCAAGTATTTCAACCAAGCCAACATGAAAATATTCAAGTACTGGGTCTGCTGTTACCTCTAT-CTTCAATG-TCTAGGCTGTGTGCCCGGTGTCTTGGACAAAGCCAACATGCAGTAGTATATGCTTACTGATTTCT-ATCTTGATATATCAAGCTGCTGGTTCATTAATGTGTGTTATGTGTGAGGACATTTTTCCAAAATTAAAAA-AA--GTATCAAT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39250797 126 - 61074082 I e mm10.chr11 99423227 70 + 122082543 I a score=27496.000000 s hg38.chr17_JH159146v1_alt 19314 16 + 278131 ATAAAGGCAAGCTACA s panTro4.chr17 66136184 16 - 82630442 ATAAAGGCAAGCTACA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47887320 5 - 81552678 --------AATTT--- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53000428 16 + 80904711 ATAAAGGCAAGCTACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52522771 16 + 80997621 ATAAAGGCAAGCTACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47568385 16 + 74645514 ATAAAGGCAAGCtaca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9834775 16 - 75148670 ATAAAGGCAAGCTACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112677767 16 + 159171411 ATAAAGGCAAGCTACA i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24662151 5 - 73212453 I e canFam3.chr9 39250797 126 - 61074082 I e mm10.chr11 99423227 70 + 122082543 I a score=251780.000000 s hg38.chr17_JH159146v1_alt 19330 89 + 278131 AAGTATAATAATTTA-AGTATTCGTGGATTC-ACAATGTAGACACATTCAGATGTTACTCTCATTCTAATGTACACATGCATGCACACACA s panTro4.chr17 66136200 89 - 82630442 AAGTATAATAATTTA-AGTATTCGTGGATTC-ACAATGTAGACACATTCAGATGTTACTCTCATTCTAATGTACACGTGCATGCACACACA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24662156 91 - 73212453 AAGTATAATAATTTACAGTATTCATGGATTCAACAATGTAGACACATTCAGATATTACTCTCATTCCAATGTACACGTGCATGCACACACA i ponAbe2.chr17 I 5 C 0 s nomLeu3.chr19 47887325 89 - 81552678 AAGTATAATAATTTA-AGTATTCGTGGATTC-ACACTGTAGACACATTCAGATGTTACTGTCATTCCAGTGTACACGTGCATGCACACACA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53000444 89 + 80904711 AAGTATAATAATTTA-ATTATTAGTGGATTC-ACAATGTAGACACATTCAGATGTTACCCTCATTCTAATGTACACGTGCATGCACACACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52522787 89 + 80997621 AAGTATAATAATTTA-ATTATTAGTGGATTC-ACAATGTAGACACATTCAGATGTTACCCTCATTCTAATGTACACGTGCATGCACACACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47568401 89 + 74645514 aagtataataattta-agtATTAGTGGATTC-ACAATGTAGACACATTCAGATGTTACTCTCATTCTAATgtacacgtgcatgcacacaca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9834791 89 - 75148670 AAGTATAATAATTTA-AGTATTAGTGGATTC-ACAATGTAGACACATTCAGATGTTACTCTCATTCTAATGTACACGTGCATGCACACACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112677783 81 + 159171411 AAGT-------CGTA-AGTGTTAGTAGATTC-ACAATGTAGATGCATTCAGCTGTTACTCTCATTCTAAC-TACACATGCATGCACACACA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39250797 126 - 61074082 I e mm10.chr11 99423227 70 + 122082543 I a score=743239.000000 s hg38.chr17_JH159146v1_alt 19419 243 + 278131 CACAC--CCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCCCTGGGAGCCCTT---TCTCCTGAGAATGCTTCTTTCGCTGGCCTTTATCTC----ATTGGAGTTAGTCT--CAATGGTTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGTAGCCTAGATTCCCCGTAGT s panTro4.chr17 66136289 245 - 82630442 CACACACCCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCCCTGGGAGCCCTT---TCTCCTGAGAATGCTTCTTTCTCTGGCCTTTATCTC----ATTGGAGTTAGTCT--CAATGGTTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGTAGCCTAGATTCCCTGTAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24662247 251 - 73212453 CAC----CCAGAAAACATGCAACTCAGATGTTCTTTGCTTGGTGCCCAGTGTGCAGGTGCTCCCTGCAGAGGGGATCTTCTGCAGCCCCTGCTGCTCCACCCTCCCTGGGAGCCCTTTAATCTCCTGAGAATGCTTCTTTCTCTGGCCTTTATCTC----ATTGGAGTTAGTCTCACAATGGTTAGTACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCCGTAGCCTAGATTCCCTATAGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47887414 247 - 81552678 CAC----CCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCCCCTTCCCTGGGAGCCCTT---TCTCCTGAGAATGCTTCTTTCTCTGGCCTTTATCTCCAATACTGGAGTTAGTCTCGCAATGGTTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGTCTCCTGAGGAATTCCAGACCTGTAGCCTAGATTCCCCGTAGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53000533 245 + 80904711 CATAC--CCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCTCTGGGAACCCTT---TCTCCTGAGAATGCTTCTTTCTCTAGCCTTGATCTC----ATTGGAGTTTGTCTCATAATGGCTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGTAGACTAGATTCCCTGTAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52522876 245 + 80997621 CAAAC--CCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCTCTGGGAACCCTT---TCTCCTGAGAATGCTTCTTTCTCTAGCCTTGATCTC----ATTGGAGTTTGTCTCATAATGGCTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGTAGACTAGATTCCCTGTAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47568490 245 + 74645514 tatac--ccag-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAATGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCTCTGGGAACCCTT---TctcctgagaaagcttctttctctagcCTTTATCTC----ATTGGAGTTTGTCTCATAATGGCTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGTAGACTAGATTCCCTGTAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9834880 245 - 75148670 TATAC--CCAG-AAACATGC-ACTCAGATG-TCTTTGCTTGGTG-CCAGTGTGCAGGTGCTCCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCTCTGGGAGCCCTT---TCTCCTGAGAAAGCTTCTTTCTCTAGCCTTTATCTC----ATTGGAGTTTGTCTCATAATGGCTAGCACTTGTTTTGCCTTG-TAGAGTACAGACTGACTCCTGAGGAATTCCAGACCTGCAGACTAGATTCCCTGTAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112677864 231 + 159171411 CATAC--CCAG-AAACATGC-ACTGAGATG-TCTTTGCTTGGTG---------------CACCCTGCAGA-GGGATCTTCTGCAGCCCCTGCTGCTCCACCTTCCCTGGGAGCCCTT---TCTCCTGAGAATGCTTATTTCTCTGGCCTTTATCTT----GTTGGGGTTAGTCTCACAATGGCTAGCGCTTGTTTTCCCTTG-TAGAGTACAGACTGACTTCCCAGGAATTCCAGATCCGTAGCCTAGATTCCTTGTTGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99423297 198 + 122082543 cacCT--CCAA-TGACAATC-AATCTAATG-GCT-----------CTGGTGTACAGGTTCCCACAGCAGA-G---CCTTTAATAGTA------GCTCCATATTTCCTGGGCGCCCTG---GTCCCAGAGAATGCTTCTTTCTCTGGCCTTTATGCC----ATGAGAGTTGGTCTC---AAGGTCAGTACTTGCTTTGCAGTGATAGAGCGCGGATTCTTCCTCG------TTCAG---------CAAGA----------- i mm10.chr11 I 70 C 0 e canFam3.chr9 39250797 126 - 61074082 I a score=478173.000000 s hg38.chr17_JH159146v1_alt 19662 137 + 278131 TTACTGCTGCCTCCTGTCCACCTGCatatc----cagatattatctccctgattacagcctccccgaagctgaggttcttccattgtgaagagtcctgagccagaactagcagtgcccactggggattaggggacagatgc s panTro4.chr17 66136534 137 - 82630442 TTACTGCTGCCTCCTGTCCACCTGCatatc----cagatattatctccctgattacagcctccgcgaagctgaggttcttccattgtgaagagtcctgagccagaactagcagtgcccactggggattaggggacagatgc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24662498 137 - 73212453 TTATTGCTGCCTCCCGTCCACCTGCatatc----cagatattatctccctgattacagcctccccgaagctgaggttcttccattgtgaagagtcctgagccagaactagcagtgcccactggggattaggggacagatgc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47887661 137 - 81552678 TTACTGCTGCCTCCTGTCCACCTGCGtatc----cagatattatctccctgattacagcctccccgaagctgaggttcttccattgtgaagagtcctgagccagaactagcagtgcccactggcgattaggggacagatgc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53000778 137 + 80904711 TTACTGCTGCCTCCTGTCCATCTGCatatc----cagatattatctcctggattacagcctccccgaagctgaggttcttccattgtgaagagtcctgaggcagaactagcagtgcccactggggattaggggacagatgc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52523121 137 + 80997621 TTACTGCTGCCTCCTGTCCATCTGCatatc----cagatattatctcccggattacagcctccccgaagctgaggttcttccattgtgaagagtcctgaggcagaactagcagtgcccactggggattaggggacagatgc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47568735 137 + 74645514 TTACTGCTGCCTCCTGTCCATCTGCATATC----CAGATATTATCTCCCGGATGACAGCCTCCCCAAAGCTGAGGTTCTTCCATTGTGAAGAGTCCTGAGGCAGAACTAGCAGTGCCCACTGGGGATTAGGGGACAGATGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9835125 137 - 75148670 TTACTGCCGCCTCCTGTCCACCTGCGtatc----cagatattatctcccggattacagcctccccgaagctgaggttcttccattgtgaagagtcctgaggcagaactagcagtgcccactggggattaggggacagatgC i chlSab2.chr16 C 0 I 140 s calJac3.chr5 112678095 136 + 159171411 TTACTGCTGCCTCCTGTCCGCCTGCatatc----cag-tattattttcctgattacagcctctctgaagctgaggttcttccattgtgaagagtcctgagccagaactagcagtgttcactggaaatgaggggacagatgt i calJac3.chr5 C 0 C 0 s mm10.chr11 99423495 123 + 122082543 -----GCAAC-----ACTCACCT---CGTC----CAGGTAGTGTTGGCCCTTATTCAGCCTCCCCAGAGGCGAAA-TCTTAAATCTGGAGTCGTACCAAGCCAGAGTGAGAGCTGCCTATTGGGCACTCGGGAGCACATGC i mm10.chr11 C 0 I 1 s canFam3.chr9 39250923 118 - 61074082 tcactgcTCCCACCC-TCAACCCCTGTGTCCCCACAGATATTCTCTGCTTGACTGTAGCGTCCCAAAAAGTGAGGTTCTTC----------------------Aagccggcagtgcccactggtgacataggggcaaatgc i canFam3.chr9 I 126 C 0 a score=-880.000000 s hg38.chr17_JH159146v1_alt 19799 1 + 278131 -c s panTro4.chr17 66136671 1 - 82630442 -c i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24662635 1 - 73212453 -c i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47887798 1 - 81552678 -c i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53000915 1 + 80904711 -c i rheMac3.chr16 C 0 I 278 s macFas5.chr16 52523258 1 + 80997621 -c i macFas5.chr16 C 0 I 280 s papAnu2.chr16 47568872 1 + 74645514 -C i papAnu2.chr16 C 0 I 139 s calJac3.chr5 112678231 1 + 159171411 -c i calJac3.chr5 C 0 C 0 s canFam3.chr9 39251041 1 - 61074082 a- i canFam3.chr9 C 0 C 0 e mm10.chr11 99423618 1 + 122082543 I e chlSab2.chr16 9835262 140 - 75148670 I a score=2145.000000 s hg38.chr17_JH159146v1_alt 19800 3 + 278131 gag s panTro4.chr17 66136672 3 - 82630442 aag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24662636 3 - 73212453 gag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47887799 3 - 81552678 gag i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112678232 3 + 159171411 gag i calJac3.chr5 C 0 C 0 s mm10.chr11 99423619 2 + 122082543 GA- i mm10.chr11 I 1 C 0 s canFam3.chr9 39251042 3 - 61074082 gag i canFam3.chr9 C 0 C 0 e chlSab2.chr16 9835262 140 - 75148670 I e papAnu2.chr16 47568873 139 + 74645514 I e macFas5.chr16 52523259 280 + 80997621 I e rheMac3.chr16 53000916 278 + 80904711 I a score=1944857.000000 s hg38.chr17_JH159146v1_alt 19803 554 + 278131 -gggtcacacctgaagcccatggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------aaggactg---------ttttgactttttatta------------------------------------------aaaaaaaaaaaaaaa------------------------------------------------gccactttcccagggacacaaatgatgaacccgtggtgaaatccaattacaact----------------------tccttttatattattacataagggacaaatgtgaagggacatatt-t--ctccccaacctaaactcgtcacaaagagcaagcaagtggga-tttctaaataaagggggtttaagcaagagatttgcagaaatc-acacatt------tgcta-tagatg------tggaaagaatgtagcaacctaaggcagtctcagctt---gagagaagccatgatccattt-gtttaattt-cttgagagaatgaaaatctggtcagtggaaatgccagtgattttagccccatatggagg-----tttttaccaaggatTCCTTAAATCTATATTATAAGCA-TTTTGACTGAGCTGGTC-TTGTTTgaatt---atcagttatta-tgtactt-acta-ctttttggacactgggccagctgaattacagacatta s panTro4.chr17 66136675 562 - 82630442 -gggtcacacctgaagcccatggcaaacctccgtaaggaatacctgcga-----------------------------------------------tcaatt-cgggcaa----atgg-------------------aaggactg---------ttttgactttttataa------------------------------------------aaaaaaaaaaaaaaa-aaaaaa---------------------------------------aagccactttcccagggacacaaatgatgaacccgtggtgaaatccaattacaact----------------------tccttttatattattacataagggacaaatgtgaagggacatatt-t--ctccccaatctaaactcgtcacaaagagcaagcaagtggga-tttctaaataaagggggtttaagcaagagatttgcagaaatc-acacatt------tgcta-tagatg------tggaaagaatgtagcaacctaaggcagtctcagctt---gagagaagccatgatccattt-gtttaattt-cttgagagaatgaaaatctggtcagtggaaatgccagtgattttagccccatatggagg-----tttttaccaaggatTCCTTAAATCTATATTATAAGCA-TTTTGACTGAGCTTGTC-TTGTTTgaatt---atcagttatta-tgtactt-acta-ctttttggacactgggccagctgaattacagacatta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24662639 564 - 73212453 -gggtcacacctgaagcccgtggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------aaggacta---------ttttgactttttgtta------------------------------------------aaaaaaaaaaaaaaa--aaaaa---------------------------------------aagacattttcccagggacacaaatgatgaacccgtggtgaaatccaattacaact----------------------tccttttatattgttacataagggacaaatgtgaagggacatatt-ttctcccccaacctaaactcatcacaaagagcaagcaagtgggattttctaaataaagggggtttaagca--agatttgcagaaatctccacatt------tgctattagatg------tggaaagaatgtagcaacctaaggcaatctcagctt---gagagaagccatgatccattt-gtttaatttgcttgagagaatgaaaatctggtcagtggaaatgccag-gattttagcctcatatggagg-----tttttaccaaggatTCCTTAAATCTATATTATAAGCA-TTTTGACTGAGCTTGTC-TTGTTTgaatt---atcagttatta-tgtactt-actg-ctttttggacactgggccagctgaattacagacatta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47887802 563 - 81552678 -gggtcacacctgaagcccatggcaaacttccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------aaggactg---------ttttgactttttgtaa------------------------------------------aaaaaaaaaaaaaaaaaaaaaa---------------------------------------aagccactttcccaggggcacaaatgatgaacccatggtgaaatccaattacaact----------------------tccttttatattattacataagggacaaatgtgaagggacatatt-t--ctccccaacctaaactcatcacaaagagcaagcaagtggga-tttctaaataaaaggggtttaagcaagagatttgcagaaatc-acacatt------TGCTA-TAGATG------TGGAAAGAATGTAGCAACCTAAGGCAGTCTCAGCTT---GAGAGAAGCCATGATCCGTTT-GTTTAATTT-CTTGAGAGAATGAAAATCTGGTCAGTGGAAATGCCAGTGATTTTAGCCCCATATGGAGG-----TTTTTACCAAGGATTCCTTAAATCTATATTACAAGCA-TTTTGACTGAGCTTGTC-TTGTTTGAATT---ATCAGTCATTA-TGTACTT-ACTA-CTTTTTGGACACTGGGCCAGCTGAATTACAGACGTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53001194 552 + 80904711 -gggccacacctgaagcccc-ggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------atggaata---------ttttgactttttgtgg------------------------------------------------aaaaaaaaa-----aa---------------------------------------aagccactttcccagggacacaaatgacgaacccgtggtgaaatccaattacaact----------------------tccttttatattattacataagagacaaatgtgaagggacatatt-t--ctccccaacctaaacttgtcacaaagagcaagcaagtggga-tttctaaataaagggggtttaagcaagagatttgcagaaatc-acacatt------tgcta-tagaca------cggaaagaatgtcgcaacctaagacagtctcagctt---gagagaagccatgatccattt-gtttgattt-cttgagagaatgaaaatctgttccgtggaaaagccagtgattttagccccatatggagg-----tttttaccaaggattccttataTCTATATTATAAGCA-TTTTGACTGAGCTTGTCTTTGTTTGaatt---atcagttatta-tgtactt-acta-ctttttggacactgggccaggtgaattacagacatta i rheMac3.chr16 I 278 C 0 s macFas5.chr16 52523539 552 + 80997621 -gggccacacctgaagcccc-ggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------atggaata---------ttttgactttttgtgg------------------------------------------------aaaaaaaaa-----aa---------------------------------------aagccactttcccagggacacaaatgacgaacccgtggtgaaatccaattacaact----------------------tccttttatattattacataagagacaaatgtgaagggacatatt-t--ctccccaacctaaacttgtcacaaagagcaagcaagtggga-tttctaaataaagggggtttaagcaagagatttgcagaaatc-acacatt------tgcta-tagaca------cggaaaaaatgtcgcaacctaagacagtctcagctt---gagagaagccatgatccattt-gtttgattt-cttgagagaatgaaaatctgttccgtggaaaagccagtgattttagccccatatggagg-----tttttaccaaggattccttataTCTATATTATAAGCA-TTTTGACTGAGCTTGTCTTTGTTTgaatt---atcagttatta-tgtactt-acta-ctttttggacactgggccaggtgaattacagacatta i macFas5.chr16 I 280 C 0 s papAnu2.chr16 47569012 559 + 74645514 -GGGCCACACCTGAAGCCCCTGGCAAACCTCCATAAGGAATACCCGGGA-----------------------------------------------TCAATT-CTGGCAA----ATGG-------------------ATGgaata---------ttttgactttttgtgg------------------------------------------ggaaaaaaaaaaaaa-----aa---------------------------------------aagccactttcCCAGGGACACAAATGACGAACCCGTGGTGAAATCCAATTACAACT----------------------TCCTTTTATATTATTACATAAGAGACAAATGTGAAGGGACATATT-T--CTCCCCAACCTAAACTTGTCACAAAGAGCAAGCAAGTGGGA-TTTCTAAATAAAGGGAGTTTAAGCAAGAGATTTGCAGAAATC-ACACATT------TGCTG-TAGATA------CGGAAAGAATGTTGCAACCTAAGGCAGTCTCAGCTT---GAGAGAAGCCATGATCCATTT-GTTTGATTT-CTTGAGAGAATGAAAATCTGTTCAGTGGAAATGCCAGTGATTTTAGCCCCATATGGAGG-----TTTTTACCAAGGATTCCTTATATCTGTATTATAAGCA-TTTTGACTGAGCTTGTCTTTGTTTGAATT---ATCAGTTATTA-TGTACTT-ACTA-CTTTTTGGACACTGGGCCAGGTGAATTACAgacatta i papAnu2.chr16 I 139 C 0 s chlSab2.chr16 9835402 559 - 75148670 -gggccacacctgaagcccctggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------aaggacta---------ttttgcctttttgtgg------------------------------------------ggggggaaaaaaaaa-----aa---------------------------------------aagccactttcccagggacacaaatgacgaacccgtggtgaaatccagttacaact----------------------tccttttatattattacataagagacaaatgtgaagggacatatt-t--ctccccaacctaaacttgtcacaaagagcaagcaagtggga-tttctaaataaagggggtttaagcaagagatttgcagaaatc-acacatt------tgctg-tagata------cggaaagaatgtcgcaacctgaggcagtctcagctt---gagagaagccatgatccattt-gtttgattt-cttgagagaatgaaaatctgttcagtggaaatgccagtgattttagccccatatggagg-----tttttaccaaggattccttataTCTATATTATAAGCA-TTTTGACTGAGCTTGTCTTTGTTTgaatt---atcagttatta-tgtactt-acta-ctttttggacactgggccaggtgaattacagacatta i chlSab2.chr16 I 140 C 0 s calJac3.chr5 112678235 578 + 159171411 -gggtcacacctgaagtccatggcaaacctccataaggaatacctggga-----------------------------------------------tcaatt-ctggcaa----atgg-------------------aaggatta---------ttttgactttttgt--------------------------------------------------aaaaaaaaa-----aa---------------------------------------aaatcactttccgaggggcacaaatgatgaacccatggtgaaatccaattacaacttgtatattattataatatattgtccttttatattattacataaaggacaaatgtgaagggacatatt-t--atccccaacctagacacatcacaaagagcaagcaagtggga-tttctaaataaaggggttttaagcaagaaatttgcagaaatc-acacatt------tgcta-tagatg------tgg--agagtctagcaacctaagtcattctcagctt---gagagaagccatgatccatttggtttaattt-cttgagagaatgaaaatctgttcagtggaaatgccagcgattttatccccatagggagatttcttttttaccaaggatTCCTTAAATCTATGTTGTAAGCA-TTTTGACTGAGCTTGTCCTTGTTTGAATT---ATCAATTATTA-TGCACTTAACTA-TTTTTTGGACACTGGGTCAGGTGAATTACAGACATTA i calJac3.chr5 C 0 C 0 s mm10.chr11 99423621 695 + 122082543 -AGGTCACAGCTGAGCTTCATGGCAGGCCTCCGTAAGAAATACCCAGGACAggggctggagagatggcactgactgctcttcctgaggtcctgagttcaattcccagcaaccacatggtggctcataaccatctataatggggtc---------ccatgccctcttctggtgtgtctggaaacagctacagtgtactcgcataaaataatctaaaaaaaggaagaaAGAAAGAAGGAAAGAAAACCCAGGATCAAACAGACTGGCAGcttttcaaatcactttcccagggtcaggaacactgaacccggagtgacagctactgacaact----------------------ccccttaaccttgttaaataaggaacatgtgc-aagggacacattct--cctcccaacctataca-gtcacaaagaaagagca----ggg-cttc---------------aaagcaagaggtttgcagaaatg-atacatt----tatactg-taaatatatgcctgggaagcac-cagcaatctctggcagacaaggtttgacgacacagtctgcaatccactt-gcctcattt-gtAAGGAGCATGGGAAGTTG-TGAACTGAGATGCCAAGACCCACAGTTACAGATGGAGG------CTCCACTAAGGGTTCCTCTAATCTATG--------------GGCTGAGCTCGTCCTTGTTTGAACTGACATCAGTTCCCA-TGTTCCT-GCTGTCATCCAAGACACTGGATCAAGCGAGTCGCAGACCTTG i mm10.chr11 C 0 C 0 s canFam3.chr9 39251045 541 - 61074082 gacttaacacctgaagcccatgtcaggcctctatagggaatactcagtg-----------------------------------------------tcaatt-ctggcaa----acag-------------------aaggactgcatgatgctttttatttatttattt--------------------------------------------------------a-----tt---------------------------------------cgtttactttcccagggacaggaatgatgaacccagggtgaaatccaattacagct----------------------tccttttaccttattgtagaag-gacacatatgaagggacatatt-t---tccctaacctatacccatcacaaagagcaagccaatgaga-tttctaaataaaaggggtttaagcaagacatttgcagaaact-acatattcttacttacaa-tagata------tagaaaggatgcagcaatcaaatgcagactcagcttgatgagagacgccataatccattt-gttccattt-cgtgagaggatggaaatatgttaagtggaaatgccggggaccttggcctcatatggaga-----tttttaccaaggattcctttaaTGTATATTACAAGCATTTTTTTCTGAGCTTGTCCTTGTTTGAATT---TTTGGTAGTGAGTgtgctt-actg-tgttccagacactg----------------------- i canFam3.chr9 C 0 I 53 a score=81705.000000 s hg38.chr17_JH159146v1_alt 20357 31 + 278131 ttttttaaccttcacggcaagctcttaaagt s panTro4.chr17 66137237 31 - 82630442 ttttttaaccttcacggcaagctcttaaagt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24663203 31 - 73212453 ttttttaaccttcaccggaagcccttaaagt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47888365 31 - 81552678 TTTTTTAACCTTCACGGCAAGCTCTTAAAGT i nomLeu3.chr19 C 0 I 315 s rheMac3.chr16 53001746 31 + 80904711 ttttttaaccttcatggtaacctcttaaggt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52524091 31 + 80997621 ttttttaaccttcatggtaacctcttaaggt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47569571 31 + 74645514 ttttttaaccttcatGGTAACCTCTTAAGGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9835961 31 - 75148670 ttttttaaccttcatggtaacctcttaaggt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112678813 31 + 159171411 TGTTTTAACCTTCATGGTAACCTTTTAAGGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99424316 19 + 122082543 TGTTTCA---------GAGAGCTCCTAT--- i mm10.chr11 C 0 C 0 e canFam3.chr9 39251586 53 - 61074082 I a score=24886.000000 s hg38.chr17_JH159146v1_alt 20388 7 + 278131 ggtactg s panTro4.chr17 66137268 7 - 82630442 ggtactg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24663234 7 - 73212453 ggcactg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47888711 7 - 81552678 GGTACTG i nomLeu3.chr19 I 315 C 0 s rheMac3.chr16 53001777 7 + 80904711 ggtactG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52524122 7 + 80997621 ggtactg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47569602 7 + 74645514 GGTactg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9835992 7 - 75148670 ggtactg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112678844 7 + 159171411 GGCACTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99424335 7 + 122082543 GATGTTG i mm10.chr11 C 0 C 0 e canFam3.chr9 39251586 53 - 61074082 I a score=860222.000000 s hg38.chr17_JH159146v1_alt 20395 325 + 278131 gttttatttgtttgtttgtttgaaacaaggtcttgcttggttgccctcactccggctggagtgcagtggtgtgatcatagctctctgaaaccttgaactcctgagcttaagcaatcctcctgcctcagcctcccaagtagctaggac----tacaggtgggcaccacaacactggctatttttttt--------tttttaatttttttgtagagatggagtcttgttatatcgcgtaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggattacgggcatgagccacctcaaggcgcccagcttcagg s panTro4.chr17 66137275 325 - 82630442 gttttatttgtttgtttgtttgaaacaaggtcttgcttggttgccctcactccggctggagtgcagtggtgtgatcatagctctctgaaaccttgaactcctgagcttaagcaatcctcctgcctcagcctcccaagtagctaggac----tacaggtgggcaccacaacactggctatttttttt--------tttttaatttttttgtagagatggagtcttgttatatcgcgcaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggattacaggcatgagccacctcaaggcgcccagcttcagg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24663241 324 - 73212453 gttttatttgtttgtttgtttgagacaaggtcttgcttggttgccctcactcaggctggagtgcagtggtgtgatcatagctctctgaaaccttgaactcctgagcttaagcaatcctcctgcctcagcctcccaagtagctaggac----tacaggtgggcaccacaacactggctatttttttt--------ttttgaa-ttttttgtagagatggggtcttgttatatcacccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggattacaggcatgagccatctcaaggcgcccagcttcagg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47888718 329 - 81552678 Gttttatttgtttgtttgtttgagacaaggtcttgcttggttgccctcactcaggctggagtgcagtagtgtgatcttagctctctgaaaccttgaactcctgagcttaagcaatcctctg--ctcag-ctcccaagtagctaggactacatacaggtgggcacaacaacactggctatttttttt-----ttctttttgaattttttgtagagatggggtcttgttatatcgcccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggattacaggcatgagccacctcaaggcgcccagcTTCagg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53001784 306 + 80904711 Gttttatttgtttgtttgtttgagattggttcttgcttggtcgccctcactcaggctggaatgcagtggtgtgaccatag--ctctgaaaccttgaactcctgagcttaagcgatcctcctgcctcagcctcccaagtagctgggac----tacaggcatgcagcacgacactggctattttttttaaaatttattttgaatttttttgtagagacggggtcttgttatattgcccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggatta-------------------------cagCTTGAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52524129 306 + 80997621 gttttatttgtttgtttgtttgagacagggtcttgcttggttgccctcactcaggctggaatgcagtggtgtgaccatag--ctctgaaaccttgaactcctgagcttaagcgatcctcctgcctcagcctcccaagtagctgggac----tacaggcatgcagcacgacactggctattttttttttaatttattttgaatttttttgtagagacggggtcttgttatattgcccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggatta-------------------------cagcttgaga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47569609 304 + 74645514 gttttatttgtttgtttgtttgagacaaggtcttgcttggttgccctcactcaggctggagtgcagtggtgtgaccatag--ctctgaaaccttgaactcctgagcttaagcgatcctcctgcctcagcctcccaagtagctgggac----tacaggcgcgcagcACGacactggcta-tttttttaaaatttattttgaa-ttttttgtagagatggggtcttgttatattgcccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggatta-------------------------cagcttgaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9835999 304 - 75148670 gttttatttgtttgtttgtttgagacagggtcttgcttggttgccctcactcaggctggagtgcagtggtgtgaccatag--ctctgaaaccttgaactcctgagcttaagcgatcctcctgcctcagcctcccaagtagctgggac----tacaggcgtgcagcacgacactggcta-ttttttaaaaatttattttgaa-ttttttgtagagatggggtcttgttatattgcccaagctggtcttgaactttaggcctcaagtgatccttctgccttggcctcccaaagcactgggatta-------------------------cagcttgaga i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112678851 330 + 159171411 TTtttgtttgtttgtttgtttgagacagggtcttgctctgctgcccttgctcaggctggagtgcagtggtgtgatcagagctctctgaaaccttg-attcctgagctcaagccatcctcctgcctcagcctcccaagtatctaggac----tacaggtgtgcaccaccacactggcta-actttttatttttaattttaaa-ttttgtatagagatggggtcgtgttatattgcccaagctggtcttgcacttcaggcttcaagtgatccttctgccttggccccccaaagcgctgggaatataggcatgagccaccTCAAGCCACTCAGCTTGAGG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39251586 53 - 61074082 I e mm10.chr11 99424342 0 + 122082543 C a score=-1918.000000 s hg38.chr17_JH159146v1_alt 20720 5 + 278131 tggta s panTro4.chr17 66137600 5 - 82630442 tggta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24663565 5 - 73212453 tggta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47889047 5 - 81552678 tggta i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53002090 2 + 80904711 TG--- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52524435 2 + 80997621 tg--- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47569913 2 + 74645514 tg--- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9836303 2 - 75148670 tg--- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112679181 5 + 159171411 TTATA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39251639 5 - 61074082 tgata i canFam3.chr9 I 53 C 0 e mm10.chr11 99424342 0 + 122082543 C a score=1106033.000000 s hg38.chr17_JH159146v1_alt 20725 330 + 278131 cttttatccta-ttttacagatgagcaatctgagagtccagatgttaagtgatttatttacgcccatgcagctgggaggaggcagagataggattcgggcctgcagtgcctTCTATAGATACCACAACCTTGCTGCTG---GCGGTGACAATAAAAAGGGCA-GAGGATACTCTGACATCCCCTAGCTATGACACCTG-ACACTAGGCTTCTGCCCTGCACATCTAAC----AGG-AGGTGCTCTTTTTTTT-------TT----CTTTTCTTTTAAGCTTTCTCCTTGA-----ATTTCTC-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT s panTro4.chr17 66137605 331 - 82630442 cttttatccca-ttttacagatgagcaatctgagagtccagatgttaagtgatttatttacgcccatgcagctgggaggtggcagagataggattcgggcctgcagtgcctTCTATAGATAGCACAACCTTGCTGCTG---GCGGTGACAATAAAAAGGGCA-GAGGATACTCTGACATCCCCTAGCTATGACACCTG-ACACCAGGCTTCTGCCCTGCACATCTAAC----AGG-AGGTGCTCTTTTTTTT-------TTT---CTTTTCTTTCAAGCTTTCTCCTTGA-----ATTTCTC-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24663570 336 - 73212453 cttttatccca-ttttacagatgagcaatctgagagtccagatgttaagtgatttatttacgcctatgcagctgggaggtggcagagataggattcgggcctgcagtgcctTCTATAGATACCACAACCTTGCTGCTG---GCGGTGACAATAAAAAGGGCA-GAGGATACTCTGATATCCCTTAGCTATGACACCTGAACACCAGGCTTCTGCCCTGCACATCTAAC----AGGAAGGTGCTCTTTTTTTT-------TTTTTCTTATTCTTTTAAGCTTTCTCCTTGA-----ATTTCTC-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47889052 333 - 81552678 cttttatccca-ttttacagatgagcaatctgagagtccagatgttaagtgatttatttatgcccctgcagctgggaggtggcaaagataggattcgggcctgcagtgccttctatagataccacagccttgctGCTG---GCAGTGACAATAAAAAGGGCA-GAGGATACTCTGACATTCCCTAGCTATGACACCTG-ACACCAGGCTTCTGCCCTGCACATCTAAC----AGG-AGGTGCtctttttttt-------ttttt-cttttcttttAAGCCTTCTCCTTGA-----ATTTCTC-AGTATATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53002092 328 + 80904711 ---TAATccca-ttttacagatgagcagtctgagagtccaattgttaagtgatttacttaagcccatgcagctgggaggtggcagagataggattcgggcctgcagtgcctTCTATAGATACCACAACCTTGCTGCTG---GCAGTGACAATCAAAAGGGCA-GAGGATACTCTGATATCCCCTAGCTGCGACACCTG-ACACCAGGCTTCTGCCCTGCACATC-ACC----AGG-AGGTGCTCTTTTTTTT-------TTTT--CTTTTCTTTTAAGCTTTCTCCGTGA-----ATTTTTT-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52524437 328 + 80997621 ---taatccca-ttttacagatgagcagtctgagagtccaattgttaagtgatttacttaagcccatgcagctgggaggtggcagagataggattcgggcctgcagtgcctTCTATAGATACCACAACCTTGCTGCTG---GCAGTGACAATCAAAAGGGCA-GAGGATACTCTGATATCCCCTAGCTGCGACACCTG-ACACCAGGCTTCTGCCCTGCACATC-ACC----AGG-AGGTGCtctttttttt-------tttt--cttttcttttAAGCTTTCTCCGTGA-----ATTTTTT-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47569915 330 + 74645514 ---taatccca-ttttacagatgagcagtCTGAGAGTCCAACTGTTAAGTGATTTATTTAAGCCCATGCAGCTGGGAGGTGGCAGAGATAGGATTCGGGCCTGCAGTGCCTTCTATAGATACCACAACCTTGCTGATG---GCAGTGACAATCAAAAGGGCA-GAGGATACTCTGATATCCCCTAGCTACGACACCTG-ACACCAGGCTTCTGCCCTGCACATC-ACC----AGG-aggtgctctttttttt-----tctttt--cttttcttttaagctttctccgtga-----atttttt-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9836305 335 - 75148670 ---taatccca-ttttactgatgagcagtctgagagtccagttgttaagtgatttatttaagcccatgcagctgggaggtggcagagataggattcggacctgcagtgcctTCTATAGATACCACAACCTTGCTGCTG---GCAGTGACAATCAAAAGGGCA-GAGGATACTCTGATATCCCCTAACTATGACACCTG-ACACCAGGCTTCTGCCCTGCACATC-ACC----AGG-AGGTGCtctttttttttcttttctttt--cttttcttttAAGGTTTCTCTGTGA-----ATTTTTT-AGTGTATGGGCTGAGACCTAGAGAATGACTTTTCATGGCTTATAAGCAACAACAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112679186 322 + 159171411 CTTCTGTccca-ttttacacatgcgcaatctgagcgtctg---gttaagtgatttattgaagcccatgcagctgggaggtggcagagataggactcggaccTGCAGTACCTTCTATAGATACCACAACCCTGCTGCTG---GCAGTGACAATGAAAAGGACA-CAGGATACTCTGACATCCCCTAGCTATGACACCTG-ACACCAGACTTCTGCCCTGCACATC-AACCACGAGG-AGGTGCTCTTTTTTTT-------TTTT------------AATCTTTCTCCTTGA-----ATTTCTC-AGTGTATGGGCTCAGACCTAGAGAATGACTTTTCATGGCTTATAAAAAACAACAC i calJac3.chr5 C 0 I 1075 s mm10.chr11 99424342 283 + 122082543 CTTTTATCTCC-TTTTACAACAGAACCATCTCAGAGTCAGGACAT----TGACTTATTTAA-------------------GGCAGAGAGAGAAATCAGCTCTTTAGTATAGTCTACAGACAGCGCAACCCTGATGCTTCTCTTGGTGA-AATACAAAGGACACCAGGTGACTGTGACCT-CCTTAACTGTG--------AGATTGAAGTTCTCACCCACACACCAACC----AGA-A---ACTCTGACTCTG-------TCCT--------------------TCCTGGA-----ACTTCTCGGGGGCACAGCCTAAGACC-ACAAAATGATTTTCTGTGGCCTATGAAAAATGACAC i mm10.chr11 C 0 C 0 s canFam3.chr9 39251644 287 - 61074082 cttttgtcctatttttccaaatgagcaatctgaaggtcacaatgttaagtgacttattcaagaccacacagtcaggaggtggcagagataggattcAGGT-TGCAGTGCCTTTTATAGATAACACAACCCTGCTTCTT---ACGGTGAAAACAGAAAGAGCA-GAGG---------------------GTCACTCTTG-AGACTAGGTTTCTGCTCTGCACATCACCC----AGG-AG-----CTTTAGCTC-------TTTC--CTTTTCAAGAAAGCGTTCTCCTTGAATTTCATTTCTC-AGCGTACAGGCTGAGACCCAGAGAATGGCAC------------------------ i canFam3.chr9 C 0 C 0 a score=1173714.000000 s hg38.chr17_JH159146v1_alt 21055 358 + 278131 GACACATGAAATTCTGTAAACACACAGGCAAATGCGGTTTTCA-TTTTAGCTTTGACCTGT-AACTACATCTCCAGAGATCTTATAAAGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGATGTTAT-GGTTGTTAACTATTATTCACTCCCAAGTGTCCCCCAAGAC-----AGAGAGATTCCATT-TTACTGCCATA-GAAATGAAAACAGAA--------GC-------AAATAAAATGTC--AAAAGAAATGTGCCAA--GTTCAAAATTGTACC-TCAGTGA--TT-TGATCACATAATACGGGAATATGATTAAGTTGAATTTTTG-AACTTGGAATTGATTTTGTGCTG-AAAGG--TACAC-TTTCCAACTCTAATGCCTATG s panTro4.chr17 66137936 358 - 82630442 GACACATGAAATTCTGTAAACACACAGGCAAATGCGGTTTTCA-TTTTAGCTTTGACCTGT-AACTACATCTCCAGAGATCTTATAAAGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGATGTTAT-GGTTGTTAACTATTATTCACTCCCAAGTGTCCCCCAAGAC-----AGAGAGATTCCATT-TTACTGCCATA-GAAATGAAAACAGAA--------GC-------AAATAAAATGTC--AAAAGAATTGTGCCAA--GTTCAAAATTGTACC-TCAGTGA--TT-TGATCACATAATATGGGAATATGATTAAGTTGAATTTTTG-AACTTGGAATTGATTTTGTGCTG-AAAGG--TACAC-TTTCCAACTCTAATGCCTACG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24663906 373 - 73212453 GACACATGAAATTCTGTAAACACACAGGCAAATGGGGTTTTTGTTTTTAGCTTTGACCTGTAAACTACATCTCCAGAGGTCTTATAAAGCACAAGTGAAACTTGCACTCCCCACCACAAGAAC-TTGATGTTACGGGTTGTTAACTATTATTCAGTCCCAAGGGTCCCCCAAGAC-----AGAGAGATTCCATT-TTGCTGCCATATAAAATGAAAGCAGAA--------GC-------AAATAAAATGTCCAAAAGGATATGTGCCAAGGGTCAAAAATTGTACCTTCAGTGGATTT-GGATCACATAATATGGGAATATGATTAAGTTGAATTTTTGAAACTTGGAATTGATTTTGTGCTGAAAAGG--TATACTTTTCCAACTCTAATGCCTATG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47889385 358 - 81552678 GACACATGAAATTCTGTAAACACACAGGCAAATGGGGTTTTCG-TTTTAGCTTTGATGTGT-AACCACATCTCCGGAGATCTTATAAGGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGATGTTAT-GGTTGTTAACTATTATTCCGTCCCAAGTGTCCCCCAGGAC-----AGAGAGATTCCATT-TTACTGCCATA-GAAATGAAAACAGAA--------GC-------AAATAAAATGTC--AAAGGAAATGTGCCAA--GTTCAAAATTGTACC-TCAGTGA--TT-TGAACACATAATATGGGAATATGATTAAGTTGTATTTTCG-AACTTGGAATTGATTTTGTGCTG-AAAGG--TATAC-TTTCCAACTCTAATGCCTATG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53002420 348 + 80904711 GACACATGAAATTCTGTAAACACACAGGCAAATGTAGTTTTCG-TTTTAGCTTTGACCTGT-AGCCACATCTTCAGAGATCTTTTAAAGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGACGTTAT-GGTTGTTAACTATTATTCAGTCCCAAGTGTCCCCCAAGAC-----AGAGAGACTCCATT-TTACTGCCATC-GAAATGAAAACAGAA--------GC---------------------AAAGGAAATGTGCCAA--ATTCAAAGTTGTACC-TCAGTGA--TT-TGATCACATAATATGAGAATAAGATTCAGTTGTATTTTTG-AACTTGGAATTGATTTTGTGCTG-AAAGGTATATAC-TTTCCAACACTAATGCCTACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52524765 348 + 80997621 GACACATGAAATTCTGTAAACACACAGGCAAATGGGGTTTTCG-TTTTAGCTTTGACCTGT-AGCCACATCTTCAGAGATCTTTTAAAGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGACGTTAT-GGTTGTTAACTATTATTCAGTCCCAAGTGTCCCCCAAGAC-----AGAGAGACTCCATT-TTACTGCCATC-GAAATGAAAACAGAA--------GC---------------------AAAGGAAATGTGCCAA--ATTCAAAGTTGTACC-TCAGTGA--TT-TGATCACATAATATGAGAATAAGATTCAGTTGTATTTTTG-AACTTGGAATTGATTTTGTGCTG-AAAGGTATATAC-TTTCCAACTCTAATGCCTACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47570245 348 + 74645514 GACACATGAAATTCTGTAAACACACAGGCAAATGTGGTTTTCG-TTTTAGCTTTGAGCTGT-AGCCACATCTTCAGAGATCTTTTAAAGCACAAGTTAAACTTGCACTCCCCA-CACAAGAAC-TTGACGTTAT-GGTTGTTAACTATTATTCAGTCCCAAGTGTCCCCCaagac-----agagagactccatt-ttaCTGCCAtc-gaaatgaaaacagaa--------gc---------------------aaagGAAATGTGCCAA--ATTCAAAGTTGTACC-TCAGTGA--TT-TGATCACATAATATGAGAATAAGATTCAGTTGTATTTTTG-AACTTGGAATTGATTTTGTGCTG-AAAGGTATATAC-TTTCCAACTCTAATGCCtaca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9836640 348 - 75148670 GACACATGAAATTCTGTAAACACACAGGCAAATGTGGTTTTCG-TTTTAGCTTTGACCTGT-AGCCACATCTTCAGAGATCTTTTAAAGCACAAGTTAAACTTGCACTCCTCA-CACAAGAAC-TTGACGTTAT-GGTTGTTAACTATTATTCAGTCCCAAGTGTCCCCCAAGAC-----AGAGAGACTCCATT-TTACTGCCATC-GAAATGAAAACAGAA--------GC---------------------AAAGGAACTGTGCCAA--ATTCAAAGTTGTACC-TCAGTGA--TT-TGATCACATAATATGAGAATAAGATTCAGTTGTATTTTTG-AAGTTGGAATTGATTTTGTGCTG-AAAGGTATATAC-TTTCCAACTCTAATGCCTACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112680583 340 + 159171411 GACACATGAAATTCTTTAAACATGCCGGCAAATGTGGTTTTCA-GTTTAGCTTTGACCTGT-AGCCACATCTCCAGAGAGCTTATAAAGCACAAATTAAACTTGTACTCCCCA-CACAAGAAC-TTGACAATAG-G---GTTAACTATTATTCAGTCACA--TGTCCCCCAAGAC-----AGAGAGATTTCATT-TTACTGCCATA-GAAATGAAAACAGAA--------GC---------------------ACAGGAAATGTGCCAG--ATTCAAAATTGTACC-TCAGTAA--TT-TGATCACATAATATG-GAATATGATGAAGTTGTATTTTTG-AACTTGGAATTGATTTTGTGCCA-AAACA--CACAT-TTTCCAACTCTAATGCCTATG i calJac3.chr5 I 1075 C 0 s mm10.chr11 99424625 338 + 122082543 --CCTGTGAGACTCTGCCAATGCTAAGGCAGATGTGTCTTTAG-TTTGGGTTTTGTCCTCT-GGCCTCATCTCCAGACATATGACAAAGCATAAGTGAG--------------------------TGACATTGT-GGTTGTTTCCTGTGACTCACAAGCAACACTCTCGCAAGGC-----AGAGTGGCTCCATT-TTACCACCATA-GAAAC--AAACAGGG--------GCTGTTGCTTGCTACAGCGTC--AACAAGGATGTGCCCT--AAACACAACATCCAC-TTAGCAG--TTACAAGCAGCTAATAACGTAATGTGAATAGCATGTATTTTTG-AACTCGGAGTCAATTTTGTCCTG-AAATG--CATGT-TTTACATCCTTAATGCTTATA i mm10.chr11 C 0 I 175 s canFam3.chr9 39251931 369 - 61074082 CACATGTGAAATCCTGCAAACACATGGGCAAGTGTACTTTTAG-TTATACTTTTGACATGT-AACCACATTGTCAGAGATCATGTAAAGTACTAGTTCTGCTTGCATTTCCTA-TACAGGAACTTTGACATTAT-GGTCATTAATTATTAGTTATGAGCAGCACCCCCCCGCCACCTTCAAGGGTGATTCCATCATTATTGCCATA-GACATG-AAACAGACTATTACTTGC-------TTACAGACT-----TGAGAGGATGTGCCAA--ATGCAGACTTGTAGC-TTAGTGA--TA-TGATCATATAATATGGGAATATGATTAACTTGAATTCTTG-AACTTGGAACTGATTTTGTGCTG-AAATG--TCTAT-TTTCCATCTCTGATGCCTATA i canFam3.chr9 C 0 I 1 a score=1319777.000000 s hg38.chr17_JH159146v1_alt 21413 370 + 278131 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTTTATATATTATTTGTTTATGTTTCTATACATATAACATATTATCCTAGAC--TAAGCTTGTTAGGTAGGTACTACATCTAATTTATTTTTT----ATCCTGAGTCCTAGCCTAGTGTTTCGCTGAACTTTATCACTGCACTCCTTGAATGATTTCATTTGAAAGAAGTTAAGTCTTAATGTGTTTGAATGTGTCATTTGAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTTACTGGTATGC-TTTGACC--AATATTTATTCTGAATT--CAGTT-ATGAA-TGGGGAGCAACTTC--AGAAGTTGAAAAGGGAAA-----------------------TATTTCTT--CTTCAGTGGC-------------------------TTTTT s panTro4.chr17 66138294 370 - 82630442 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTTTATATATTATTTGTTTATGTTTCTATACATATAACATATTATCCTAGAC--TAAGCTTGTTAGGTAGGTACTACATCTAATTTATTTTTT----ATCCTGAGTCCTAGCCTAGTGTTTGGCTGAACTTTATCACTGCACTCCTTGAATGATTTCATTTGAAAGAAGTTAAGTCTTAATGTGTTTGAATGTGTCATTTGAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTTACTGGTATGC-TTTGACC--AAGATTTATTCTGAATT--CAGTT-ATGAA-TGGGGAGCAACTTC--AGAAGTTGAAAAGGGAAA-----------------------TATTTCTT--CTTCAGTGGC-------------------------TTTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24664279 380 - 73212453 GTAAAATTTAAATAATATTGCTCCATCTCT-AAAATTATGTTTATATATTATTTGTTTATGTTTCTATACATATAACATATTATCctagac--taagcttgttaggtaggtactatgtctaatttatttttt----atcctgagtcctagcCTAGTGTTTGGCTGAACTTTATCACTGCACTCCTAGAATGATTTCATTTGAAAGAAGTTAAGTTTTAATGTGTTTGAATGTGTCATTTAAAATTCATTTCATTTGAAAACGACGGTGCCCTAATTTACTGGTATGCTTTTGACCCAAGAATTTATTCTGAATTTCCAGTTAATGAACCGGGGAGCAACTTTCAGGAAGTTGAAAAGAGAAA-----------------------TATTTCTTTCTTCCAGTGGC-------------------------CTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47889743 365 - 81552678 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTTTATATATTATTTGTTTATGTTTCTATACAT-----ATATTATCGTAGAC--TAAGCTTGTTAGGTAGGTACTACGTCTAATTTATTTTTT----ATCCTGAGTCCTAGCCTAGTGTTTGGCTGAACTTTATCACTGCACTCCTAGAATGATTTCATTTGAAAGAAGTTAAGTCTTAATGTGTTTGAATGTGTCATTTAAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTTACTGCTATGC-TTTGACC--AAGATTTATTCTGAATT--CAGTT-ATGAA-TGGGGAGCAACTTC--AGAAGTTGAAAAGGGAAA-----------------------TATTTCTT--CTTCAGTGGC-------------------------TTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53002768 365 + 80904711 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTTTATATATTATTTGTTTACATTTCTATACATATTACATATTATCCTAGAT--TAAGCTTCTTAGGTAGGTACTACGTC-----TATTTTTT----AGCCTGAGTCCTAGCGTGGTGTTTGGCTGAACTTTATCACTGCACTCCTAAAATGATTTCATTTGAAAGAAGTTAAGACTTAATGTGTTTGAATGTGTCATTTAAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTGACTGGTATTC-TTTGACC--AAGATTTATTCTGAATT--CGGTT-ATGAA-TGGGGAGGAACTTC--AGAAGCTGAAAAGAAAAA-----------------------TATTTCTT--CTTCAGTGAC-------------------------TTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52525113 365 + 80997621 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTttatatattatttgtttacatttctatacatattacatattaTCCTAGAT--TAAGCTTCTTAGGTAGGTACTACGTC-----TATTTTTT----AGCCTGAGTCCTAGCGTGGTGTTTGGCTGAACTTTATCACTGCACTCCTAAAATGATTTCATTTGAAAGAAGTTAAGACTTAATGTGTTTGAATGTGTCATTTAAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTGACTGGTATTC-TTTGACC--AAGATTTATTCTGAATT--CGGTT-ATGAA-TGGGGAGGAACTTC--AGAAGCTGAAAAGAAAAA-----------------------TATTTCTT--CTTCAGTGAC-------------------------TTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47570593 365 + 74645514 gtaaaatttaaataatattgctCAATctctaaaaattatgtttatatattatttgtttacatttctatacatattacatattatccTAGAT--TAAGCTTCTTAGGTAGGTACTACGTC-----TATTTTTT----AGCCTGAGTCCTGGCGTGGTGTTTGGCTGAACTTTATCACTGCACTCCTAAAATGATTTCATTTGAAAGAAGTTAAGACTTAATGTGTTTGAATGTGTCATTTACAAttcatttcatttgaaaatgaCTGTGCCCTAATTAACTGGTATTC-TTTGACC--AAGATTTATTTTGAATT--CGGTT-ATGAA-TGGGGAGGAACTTC--AGaagctgaaaagagaaa-----------------------tatttctt--cttcagtgac-------------------------ttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9836988 362 - 75148670 GTAAAATTTAAATAATATTGCTCAATCTCTAAAAATTATGTTTATATATTAT---TTTATGTTTCTATACATATTACATATTATCCTAGAT--TAAGCTTCTTAGGTAGGTACTACGTC-----TATTTTTT----AGCCTGAGTCCTAGTGTGGTGTTTGGCTGGACTTTATCACTGCACTCCTAAAATGATTTCATTTGAAAGAAGTTAAGACTTAATGTGTTTGAATGTGTCATTTAAAATTCATTTCATTTGAAAATGACTGTGCCCTAATTGACTGGTATGC-TTTGACC--AAGATTTATTCTGAATT--CGGTT-ATGAA-TGGGGAGGAACTTT--AGAAGCTGAAAAGAGAAA-----------------------TATTTCTT--CTTCAGTGAC-------------------------TTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112680923 370 + 159171411 GTAAAATTTAAATACTCTTGCTCAATCTCTAAAAATTATGTTTACATATTATTTGTTTATGTTTCTATACATATTACATATTATCCTAGAC--TAATCTTCTTAGGTGGGAACTACATCTAATTTATTTTTC----ATCCTGAGTCCTAGCCTAGTGTTTGGCTAAACTTTATCACTGCATTCCTCGAATTATCTCAGTTGAAAGAACTTAAATCTTAATGTGCTTGAATGTGTCATTTAAAATTTATTTCATTTGAAAATGACTGTGCCCTAATTTACTGGTATGC-TTTGACC--AAGATTTATTCTGAATT--CAGTT-ATAAA-GGAGGAGCAACCTC--AGAAGTTGAAAAGAGAAA-----------------------TATTTCTT--CATCAGTGGC-------------------------TTTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99425138 351 + 122082543 GTATATTTTAAGTAAATTTGCTTCATAGCC-TGCATTAGGCTTTTATAATAGGCATTTATGTTTCTACACGG-----GTATGCTCCTGAACTGTAGGCTTCTAAAGTAGAG---GTGTCTAACTGATGTTTT----ACCCTGAGTCCCAGCCCATTCTTTGACTAAAAACCTTCATTTTATACCCAGAGTTGTTTTGCTTGAAAGAATTT-ATTTGTAATTTGCTTAAATGTGTCACTGAAAATGCACCTC-----AAAATCATCACGCCCCACTCT-CTGGGATGC--TTGATT--AAGTCTTATTCTGAACT--C-----ATGTA-TAAGGGGATAACTT--GGAAGCTGGAAAGAGATG-----------------------TCTTTCTT--TTTCAATGAC-------------------------TATTT i mm10.chr11 I 175 I 109 s canFam3.chr9 39252301 423 - 61074082 GTAAATTTTAAATAATTTTGCTCGGTATCTATATATCACGTTTGCATGTTATACCTTCAtgtttctatacatattttttatcatcctagactgtaagtttctcaggtagggactatgtctaattcatttttttaAAATCCTGAGTCTTACCCTAGTGTTTGGCTAAGCTTCATCCTTGCACTTCTGGAGCTATTTCACTTGAAAGAACTTAATCCTTAATGTGTTTGAATGTGTCACTTAAAATTCATTTCACTTAAGAGTGCCTTTG-TCTAATTTGCTGGTATGC-TTTGACT--AAGATTTATTTTAAATT--CAATT-ATGAA-TGGGGAACAACTTC--AGAAATTGAAAAGAGAGAGATATCAttttttttaaagattgtatttatt--catgagagacacagagagtgagaggagagataGAtttttt i canFam3.chr9 I 1 I 179 a score=99453.000000 s hg38.chr17_JH159146v1_alt 21783 38 + 278131 -TTTTTTT-----AAGTGGGAGGCTAAGTT--AAATAATCAAGACT s panTro4.chr17 66138664 37 - 82630442 -TTTTTT------AAGTGGGAGGCTAAGTT--AAATAATCAAGACT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24664659 43 - 73212453 -TTTTTTTTT--GAAGTGGGAGGCTAAAGTTAAAATAATCAAGACT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47890108 39 - 81552678 -TTTTTTTT----AAGTGGGAGGCTAAGTT--AAATAATCAAGGCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53003133 34 + 80904711 -TTTTTT------AAGTGGGAGGCTAAATT--AA---ATCAAGACT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52525478 37 + 80997621 -TTTTTT------AAGTGGGAGGCTAAATT--AAATCATCAAGACT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47570958 39 + 74645514 -tttttttg----aagtgggaGGCTAAATT--AAATCATCAAGACT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9837350 37 - 75148670 -TTTTTG------AAGTGGGAGGCTAAATT--AAATCATCAAGACT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112681293 43 + 159171411 -TTTTTTTTTTGGTAGTGGGAGGCTAAGCT--AAATAATCAAGACT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39252903 38 - 61074082 TGTTTTT------GGGAGGAGGGCTAAGTT--AAATAATAAAGCCT i canFam3.chr9 I 179 C 0 e mm10.chr11 99425489 109 + 122082543 I a score=620848.000000 s hg38.chr17_JH159146v1_alt 21821 169 + 278131 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATTTTCTTTGACAGCCACATTAATGTATAAGGCAGTGGTGATG-------TAAAAAACAATAAACAATCTTGGGCTTGTTGGCAGAGTGATTGCATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCAGGGCAAACTGTTCAAAAG s panTro4.chr17 66138701 169 - 82630442 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATTTTCTTTGACAGCCACATTAATGTATAAGCCAGTGGTGATG-------TAAAAAAAAATAAACAATCTTGGGCTTGTTGGCAGAGTGATTGCATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCGGGGCAAACTGTTCAAAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24664702 169 - 73212453 TTGCTTTAGAGGTTTTGGAAGTGAAAATAATTTTCTTTGACAGCCACATTAATGTATAAGCCAGTGGGGATG-------TAAAAAAAAATAAACAATCTTGGGCTTGTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTATAGCTGGGGCAAACTGTTCAAAAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47890147 168 - 81552678 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATTTTCTTTGACAGCCATATTAATGTATAAGCCAGTGGGGATG-------TAAAAAAT-ATAAACAATCTTGGGCTTGTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTTTAGCCAGGGCAAACTGTTCAAAGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53003167 173 + 80904711 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATGTTCTTTGACAG-CACATTAATGTATAAGCCAGTGGGGATGTTT--AAAAAAAAAAAAAAAACAATCTTGGGCTTGTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCAGGGCAAACTGTTCAAAAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52525515 171 + 80997621 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATGTTCTTTGACAG-CACATTAATGTATAAGCCAGTGGGGATGTTT----AAAAAAAAAAAACACAATCTTGGGCTTGTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCAGGGCAAACTGTTCAAAAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47570997 171 + 74645514 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATGTTCTTTGACAG-CACATTAATGTATAGGCCAGTggggatgtta----aaaaaaaaaaaaaacaatcttggGCTTGTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCAGGGCAAACTGTTCAAAAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9837387 171 - 75148670 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATGTTCTTTGACAG-CACATTAATGTATAAGCCAGTGGGGATGTTA----AAAAAAAAAACAAACAATCTTGGACTTCTTGGCAGAGTGATTACATAAGTTGAGGCAGAGAGGAAAATGATTATAGCCAGGGCAAACTGTTCAGAAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112681336 176 + 159171411 CTGCTTTAGAGGTTTTAGAAGTGAAAATAATTTTCTCTGACAGCCACATTAATGTATAACCCAATGGGGATATATTAAAAAAAAAAAAAGAAACAATCATGGGCTTGTTGGCAAAGTGATTACATAAGTTGAGGCACAGAGGAAAATGATCATAGCCAGGGCAAACTGTTCAAAAG i calJac3.chr5 C 0 I 306 s mm10.chr11 99425598 163 + 122082543 CTGCCATTGAGGTTTTAGAGGTGAACATAATTTTATTTGACAGCCATGTAAGTGGTTTAAAAGGCGGAGATGTTT----CAAGCAAG----AACAATCCTGGACTTGTTT-----GTGATTGCATAAGTTGAGGCACAGAGAGAGAGGACAAGGGTTAGCGTGAATTGCTAACAAG i mm10.chr11 I 109 C 0 s canFam3.chr9 39252941 164 - 61074082 GTATTTTAGAGTTTTTAGAAGTAAAAATAGTTTTCTCTGACAA--ATGTAAAAATATAGGAGGGTGGAAGTG-------TAGAGAAC-AGAAATCATCTTGGGCTTGGTGGCAAAGTGATTATGTAAGTTGAGGCAGAGAGGAAAATGATGAGAA--AGGGGGAACTACTCAAAAG i canFam3.chr9 C 0 C 0 a score=17937.000000 s hg38.chr17_JH159146v1_alt 21990 5 + 278131 AATTA s panTro4.chr17 66138870 5 - 82630442 AATTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24664871 5 - 73212453 AATTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47890315 5 - 81552678 AATCG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53003340 5 + 80904711 AAGTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52525686 5 + 80997621 AAGTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47571168 5 + 74645514 AATTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9837558 5 - 75148670 AATTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112681818 5 + 159171411 aaTTA i calJac3.chr5 I 306 C 0 s mm10.chr11 99425761 5 + 122082543 AATTA i mm10.chr11 C 0 I 1825 s canFam3.chr9 39253105 5 - 61074082 AATCA i canFam3.chr9 C 0 C 0 a score=2602464.000000 s hg38.chr17_JH159146v1_alt 21995 786 + 278131 TATCTTCCATTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAAAATTAGTTATGTGGTTTTTACAAGTCTTTAGATTTTTATTGAGTAAATCATACCCTCATCTTTTCATGTCAGGTTGGTTTCTGTCCTGGTCT----TTGCAGGGTTTTCTACCTGAGTTTTTTCCCGT-AAGACAGACCTGTC-ATTTTCTGCAACTCGC-TGATCCCTTGATCTGTAACATCTTTC------ACTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCCTACATTTTATGTATTGTGCTTTTGAGATGAGGG-TTAAACAAGGA--CCCTAAGGGGTATGA-GTGAGATTGACTTCTGGGCT-CCAGAGA-TCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGTAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CCTGATGAGA--GGAATCTTGGAAATGAGCCTAGGGGAGAGAAAACAGAGATGTTT-GAAAGAGAATTC--AAAAATAAAAATCACTA-CTAATGCTTTAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATGTGGATGAGAACAGAGTGTCTGAGGAGGTCACTGGCCATGTTTTGATTTTGTATCACTCCATGTCATTCTCCTTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGAAAAAATAGTTATTTCCATCCTAACCTCACCT-----CTAGGGGCTCTCTC-TGAGTTTGATAGCTTCACTTC-TGCACTGACAATTTCA s panTro4.chr17 66138875 786 - 82630442 TATCTTCCATTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAAAATTAGGTATGTGTTTTTTACAAGTCTTTAGATTTTTATTGAGTAAATCATACCCTCATCTTTTCATGTCAGGTTGATTTCTGTCCTGGTCT----TTGCAGGGTTTTCTACCTGAGTTTTTTCCCGT-AAGACAGACCTGTC-ATTTTCTGCAACTCGC-TGATCCCTTGGTCTGTAACATCTTTC------ACTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTATGTATTGTGCTTTTGAGATGAGGG-TTAAACAAGGA--CCCTAAGGGGTATGA-GTGAGATTGACTTCTGGGCT-CCAGAGA-TCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGTAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CCTGATGAGA--GGAATCTTGGAAATGAGCCTAGGGGAGAGAAAACAGAGATGTTT-GAAAGAGAATTC--AAAAATAAAAATCACTA-CTAATGCTTTAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATGTGGATGAGAACAGAGTGTCCGAGGAGGTCACTGGCCATGTTTTGATTTTGTGTCACTCCATGTCATTCTCCTTTTTAGACGATTCAGAACTCTGGGTAGAAATAATTTCCAGAGCTCAGAAAAAATAGTTATTTCCATCCTAACCTCACCT-----CTAGGGGCTCTCTC-TGAGTTTGATAGCTTCACTTC-TGCACTGACAATTTCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24664876 804 - 73212453 TGTCTTCCACTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAAAATTAGGTATGTGGTTTTTACAAGTCTTTAGATTTTTACTGAGTAAATCATACACTCATCTTTTCATGTCAAGTTTGTTCATGTCCTGGTCT----TTGCAGGGTTTTCTACCTGAGTTTTTTCCCGT-AAGATAGACCTGTCAATTTTCTGCAACTCACTTGATCCCTTGGTCTGTAACATCTTTC------ACTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTATGTATTGTGCTTTTGAGATGAGGGTTTAAACAAGAGACCCTTAAGGGGCATAAGGTGAGATTGACTTCTGGGCTCCCAGAGATTCAATGGTTTCTTCAAAGCAGGGGAGAATTTTGAAAGTGGTAGGAGACAGGGAAGATTGA----TAAAATTAATAC----CCTGATGAAAAGGGAATCTTGGAAATGAGCCT-GGGGAGAGAAAACAGAGATGTTTGGAAAGAGAATTTCAAAAAACAGAAATCACTA-CTAATGCTTTAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATATGGATGAGAACAGAGTGTCTGAGGGGATCACTGGCCATGTTTTGATTTTGTATCACTCCATGTCATTCTCCTTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGAAAAAATAGTTATTTCCATCCTAACCTCACCT-----CCAGGGGCTCTCTCTTGAGTTTGATAGCTTCACTTCTTGCACTGACAATTTCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47890320 786 - 81552678 TATCTTCCGTTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAAAATTAGGTATGTGGTTTTTACAAGTCTTTAGATTTTTATTGAATAAATCATACACTCATCTTTTCATGTCAGGTTGGTTCGTGTCCTGGTCT----TTGCAGGGATTTCTACCTGAGTTTTTTCCCGT-AAGATAGACCTGTC-ATTTTCTGCAACTCGC-TGATCCCTCGGTCTGTAACATCTTTC------ACTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTATGTATTGTGCTTTTGAGATGAGGG-TTAAACAAGGA--CCCTAAGGGGCATGA-GTGAGATTGACTTCTGGGCT-CCAGAGA-TCAATGG-TTCTTGAAAGCAGGGGAGAGTTTTGAAAGTGGTAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CCTGATGAGA--GGAATCTTGGAAATGAGCCTAGGGGAGAGAAAACAGAGATGTTT-GAAAGAGAATTC--AAAACTAGAAATCACTA-CTAATGCTTTAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATGTGGATGAGAACAGAGTGTCTGAGGGGGTCACTGGCCATTTTTTGATTTTGTATCACTCCATGTCATTCTCCTTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGAAAAAATAGTTATTTCCATCCTAACCTCACCT-----CTAGGGGCTGTCTC-TGAGTTTGATAGCTTCACTTC-TGCCCTGACGATTTCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53003345 786 + 80904711 TGTCTTCCATTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAATATTAGGTATATGGTTTTTACACATCTTTAGATTTTTATTGAGTAAATCATACACTCATCTTTTCATGTCAGGTTGGTTCGTGTCCTGGTCT----TTGCAGGGTTTTCTACCTGAGTTTTTTCCCGT-AAGATAGAACTGTC-ATTTTCTGCAACTTGT-TGATCCCTCGGTCTGTAATATCTTTC------GCTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTACGTGTTGTACTTTTGAGATGAGGG-TTAAACAAGGA--TCCTAAGGGGCATGA-GTGAGATTGACTTCTGGGCT-CCAGAGA-TCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGCAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CGTGATGAGA--GGAATCTTGGAAATGAGCTTAGGGGAGAGAAAACAGAGATGTTT-GAAGGAGAATTC--AAAAATAGAAATCACTA-CAAATGCTTGAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATATGGGTGAGAACAGAGTGTCTGAGGGGGTCACTGGCCGTGTTTTGATTTTGTATCACTCCATGTTATTCTCCCTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGATAAAATAGTGGTTTCCATCCTTACCTCATCT-----CTAGGGGCTCTCTC-TGAGTTTGATAGCTTCACTTC-TGCACTGACAATGTCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52525691 786 + 80997621 TGTCTTCCATTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAATATTAGGTATATGGTTTTTACACATCTTTAGATTTTTATTGAGTAAATCATACACTCATCTTTTCATGTCAGGTTGGTTCGTGTCCTGGTCT----TTGCAGGGTTTTCTACCTGAGTTTTTTCCCGT-AAGATAGAACTGTC-ATTTTCTGCAACTCGT-TGATCCCTCGGTCTGTAATATCTTTC------GCTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTACGTGTTGTACTTTTGAGATGAGGG-TTAAACAAGGA--TCCTAAGGGGCATGA-GTGAGATTGACTTCTGGGCT-CCAGAGA-TCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGCAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CGTGATGAGA--GGAATCTTGGAAATGAGCTTAGGGGAGAGAAAACAGAGATGTTT-GAAGGAGAATTC--AAAAATAGAAATCACTA-CAAATGCTTGAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATATGGGTGAGAACAGAGTGTCTGAGGGGGTCACTGGCCGTGTTTTGATTTTGTATCACTCCATGTTATTCTCCCTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGATAAAATAGTGGTTTCCATCCTTACCTCATCT-----CTAGGGGCTCTCTC-TGAGTTTGATAGCTTCACTTC-TGCACTGACAATGTCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47571173 786 + 74645514 TGTCTTCCATTTTTGTAGAGTTTAGGAAATGTTCAAAATAGAGAATATTAGGTATACGGTTTTTACACATCTTTAGATTTTTATTGAGTAAATCATACACTCATCTTTTCATGTCAGGTTGGTTCGTGTCCTGGTCT----TTGCAGGATTTTCTACCTGAGTTTTTTCCCGT-AAGATAGAACTGTC-ATTTTCTGCAACTCGT-TGATCCCTCGGTCTGTAGTATCTTTC------GCTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGAGAATTTTGGGTTGCTTACATTTTATGTGTTGTACTTTTGAGATGAGGG-TTAAACAAGGA--TCCTAAGGGGCATGA-GTGAGATTGacttctgggct-ccagaga-tCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGTAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----CGTGATGAGA--GGAATCTTGGAAATGAGCTTAGGGGAGAGAAAACAGAGATGTTT-GAAGGAGAATTC--AAAAATAGAAATCACTA-CTAATGCTTGAAGTTGGAGTTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATATGGGTGAGAACAGAGTGTCTGAGGGGGTCACTGGCCGTGTTTTGATTTTGTATCACTCCATGTTATTCTCCCTTTTAGATTATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGATAAAATAGTGATTTCCATCCTTACCTCATCT-----CTAGGGGATCTCTT-TGAGTTTGATAGCTTCACTTC-TGCACTGACaatttca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9837563 785 - 75148670 TGTCTTCCGTTTTTGTAGAGTTTAGGAAATATTCAAAATAGAGAATATTAGGTATACGGTTTTTACACATCTTTAGATTTTTATTGAGTAAATCATACGCTCATCTTTTCATGTCAGGTTGGTTCGTGTCCTGGTCT----TTGCAGCGTTTTCTACCTGAGTTTTTTCCCGT-AAGATAGAACTGTC-ATTTTCTGCAACTCGT-TGATCCCTCGGTCTGTACTATCTTTC------GCTTTGGATAACATTATAAAATCCTGTGAGTGACTGAGACAATTTTGGGTTGCTTACATTTTATGTGTTGTACTTTTGAGATGA-GG-TTAAACAAGGA--TCCTAAGGGGCATGA-GTGAGACTGACTTCTGGGCT-CCAGAGA-GCAATGG-TTCTTGAAAGCAGGGGAGAATTTTGAAAGTGGTAGGAGACAGGAAGA--TGA----TAAAA-TAATAC----TGTGATGGGA--GGAATCTTGGAAATGAGCTTAGGGGAGAGAAAACAGAGATGTTG-GAAGGAGAATTC--AAAAATAGAAATCACTA-CTAATGCTTGAAGTTGGAATTGTTACTTGGGGGTCTAATCAGGTACCTGAGGCTGATCCTGA-TGCATATGGGTGAGAACAGAGTGTCTGAGGGGGTCACTGGCCGTGTTTTGATTTTGTATCACTCCATGTCATTCTCCTTTTTAGATGATTCAGAACTCTGGGTAGAAATAATCTCCAGAGCTCAGATAAAATAGTGGTTTCCACCCTTACCTCATCT-----CTAGGGGCTCTCTC-TGAGTTTGATAGCTTCACTTC-TGCACTGACAATTTCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112681823 761 + 159171411 TATCTTCCATTTTTGTAGAGGATAGGAAATGTTAAAAATAGAGAAAATTATGTTTGTGGTTTTTACAAATCTTTAGATTTTTGTTAAGTAAATCATACACTCATCTTTTCATGTCAGGTTGGTTCATGTCCTGGTCT----TTGCAGGGTTTTCTCCCTGAGTTTTTTCCCTT-AAGTTAGACCTGTC-ATTTTCT-CAACCCAC-AGACCACTTGGTCTGTAACATCTT-----------------------------TCCTATGAGTGACTGAAAGAATTTTGGGTTGCTTACATTTTATGTACTGTGCTTTTGAGATGAGGG-TTAAACAAGGA--CCCT-AGGGGCATGA-GTGAGGTTGACTTCTGGGTT-CCAGGGA-TCAATGG-TTCTTGAGAGCAGGAGAGAATTTCGAAAGTGGTAGGAAACAGGAAGA--TGA----TAAAA-TAATAC----CCTGATAAGT--GGAATATTGGAAATTAGCCTAGGGGAGAGAAAAC--AGATGTCT-GAAGGAGAATTC--AAAAATAGAAATGACTA-CTAATGCTTTAAGTTGGAATTGTTGCTTGGGGGTCTAATCAGTTACCTGAGGCTGATTCTGA-TGCATGTGGGTGAGAACAGAGTGTCTGAAGGGGTCATTGGCCATGTTTTGATTTTGTGTCACTCCATGTCATTCT---TTTTAGATGATTCAGAATTCGGGGTAGAAATAATCTCCAGAGCTCAGAAAAAATAGTCATTTCCATCCTAACCTCACCTCACCACTAGGGGCTCTCTC-TGAATTTGATAGCTTCACTTC-CACACTGACGATTTCA i calJac3.chr5 C 0 I 286 s canFam3.chr9 39253110 751 - 61074082 TGGCTTCCCTTTTTGTAGAGTTTAGGGAATACTCAAGAGAGAGACAATTATCTACGTGGTATTTGTAAATCTTTTGA--TTTATTAAGTAAAACATATGATCATCTTCTCATGTCACATTGGTTAGTTTCCTGCTCTTTAATTGCAGAATTTTCCACATGAGTTCTTTCCATTAAAGACAGACCTTCC-ACTTCCTGCAATTCAC-TGATGAGTTGGTCCCTAACACCTTTCACTTTTGCTTTGAATAACATTTGAAGATCCTGTGAGTGAGTAAAAGAATATTGGGTAACTAATATTGTATG--CTGTGCTTTTGAAATGAGGA-TGAAAAAAGAC--CCTTGGCAGTCATGC-TTGAGGATGAGTTCTGGTCT-CCAGAGC-TCAGTG--TTCTCAAAGGCAGGGA--------------GGTGAGAAAAAGGATAA--GGAATCTTGGAA-TCTTCCCTTTCCTGGGAAGG--CGAATCTTGGAAGTGAGTCTAGGGGAGAGAAAAC--AAATGTTT-GAAGGGAAATTT--AAAAATAGAAATCACTAGCCAATGCTGTAAGTTGGAATTGTTATT--------------------TGAGACTGCCCCCAAGTTAGTGAGGGTAAGAGCAGAGGGT-------GTTCACTGGTCAAGTTTTGATTTTCTGTCATTCTATGCCATTCT---TTTTAGAAGTTACAAAGCTCTGTGTAGATGTAATTCCCCAAGGCCAGAAAAAGTAGTTCTCTCCATCCTAGAATCATCT-----CTAGG-----TTTC-TGTGTTTGATGGGTCCACTTG-TACACTGATGATTTTG i canFam3.chr9 C 0 C 0 e mm10.chr11 99425766 1825 + 122082543 I a score=2014984.000000 s hg38.chr17_JH159146v1_alt 22781 607 + 278131 TATAAAATGAAAAAATACATTGATGATAATTCTAATGTG---TGATAAAGA------------------------CTTCTCTCTGGATCTGTTTACCTGTCAGAAATAGGATTATGTCATTCTAGTTCTTAGCTCATATCAGAAATA-TAGATAGATA-CAAAGA-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-TCTCACTCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGACAGACCAAAGAAGCAAGAGG---AAGAA-AAAATCTTCATTTTTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAATCCTACCTC-TTTTAACACAGTGTCATCATTGCCATA-TAACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTTATTAATCAGATTCACAG--TCTGGTATTTGCATGTCAAAGTTTCAGACTATTCTGGAATGTGTCTCAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATCTTTAAATGCAACTTACTAGCTAGCGTGACTTGGAAGAAAATTAAG s panTro4.chr17 66139661 607 - 82630442 TATGAAATGAAAAAATACATTGATGATAATTCTAATGTG---TGATAAAGG------------------------CTTCTCTCTGGATCTGTTTACCTGTCAGAAATAGGATTATGTCATTCTAGTTCTTAGCTCATATCAGAAATA-TAGATAGATA-CAAAGA-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-TCTCACTCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGACAGACCAAAGAAGCAAGAGG---AAGAA-AAAATCTTCATTTTTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAATCCTACCTC-TTTTAACACAGTGTCATCATTGCCATA-TAACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTTATTAATCAGATTCACAG--TCTGGTATTTGCATGTCAAAGTTTCAGACCATTCTGGAATGTGACTCAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATCTTTAAATGCAACTTACTAGCTAGTGTGACTTGGAAGAAAATTAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24665680 616 - 73212453 TGTAAAATGAAAAAATACATCGATGATAATTCTAATGTG---TGATAAAGA------------------------CT--TCTCTGGATCTGTATACCTATCAGAAATAGGATTATGTCATTCTGGTTCTTAGCTCATATCAGAAATATTAGATAGATACCAAAGACTTAATGGCTTCACTTtcacacagtaactgctggcagaactggaggtagaactccaccatctgg-ttcacatgtatgtagc-tctcactcac-tTCTTTGAAAGATTGCTTGGAAGGAACTAGAGATAGACCAAAGAAGCAAGAGG---AAAAACAAAATCTTCATTTTTC--CGAT-----------CTAAAAATAACAATTCTACTTCTTTTTAAACAGGTTAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAATCCTACCTCTTTTTAACACAGTGTCATCATTGCCATA-TAACAGTGGTCAGGCCTAATCAGTTACAAACCCATCTGGC-ATAGGATTTCTTATTAATCAGATTCACAG--TCTGGTATTTGCCTGTCAAAGTTTCAGACCATTCTGGAATGTGACTCAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATCTTTAAATGCAATTTACTAGCTGGTGTGACTTGGAAGAAAATTAAG i ponAbe2.chr17 C 0 I 1 s nomLeu3.chr19 47891106 606 - 81552678 TATAAAATGAAAAAATACATTGATGGTAATTCTAATGTG---TGATAAAGA------------------------CT--TCTCTGGATCTGTATACCTGTCAGAAATAGGATTATGTCATTCTAGTTCTTAGCTCATATCAGAAATA-TAGATAGATA-CAAAGA-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTTCACCATCTGG-TCCACATGTATGTAAC-TCTCACCCAC-TTCTTTGAAAGATTGCTTGAAAGAAATTAGAGATAGACCAAAGAAGCAAGAGG---AAAACAAAAATCTTCATTTTTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTGAAAGAGGACCATCCTAAATTAAGAATAACAATCCTACCTC-TTTTAACACAGTGTCATCATTGCCATA-TAACAGTGGTCAGGTCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTTATTAATCAGATTCACAG--TCTGGTATTTGCATGTCAAAGTTTCAGACCATTCTGGAATGTGACTCAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATCTTTAAATGCAATTTATTAGCTGGTGTGACTTGGAAGAAAATTAAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53004131 607 + 80904711 TATAAAATGAAAAAATACATTGATGATAATTCTAATGTGTTTTGATAAAGA------------------------CT--TCTCTGGATTTGTACACCTGTCAGAAATAGGATTATGTCATTCTGGTTCTTAGCTCATATAAGAAATA-TAGATAGATA-CAAAGA-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-ACTCACCCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGATAGACCAAAGAAGCAAGAGG--AAAAAA-AAAATCCTCATTTTTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAACCCTACCTC-TTTTAACACTGTGCCATCATTGCCATA-TGACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTCATTAATCAGATT--CAG--TCTGGTATTTGCAAGTCGAAGTTTCAGACCATTCTGGAATGTGACTGAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATTTTTAAATGCAATTTACTAGCTGGCGTGACTTGGAAGAAAATTAAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52526477 605 + 80997621 TATAAAATGAAAAAATACATTGATGATAATTCTAATGTGTTTTGATAAAGA------------------------CT--TCTCTGGATTTGTACACCTGTCAGAAATAGGATTATGTCATTCTGGTTCTTAGCTCATATAAGAAATA-TAGATAGATA-CAAAGA-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-ACTCACCCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGATAGACCAAAGAAGCAAGAGG----AAAA-AAAATCCTCATTTTTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAACCCTACCTC-TTTTAACACTGTGCCATCATTGCCATA-TGACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTCATTAATCAGATT--CAG--TCTGGTATTTGCAAGTCGAAGTTTCAGACCATTCTGGAATGTGACTGAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATTTTTAAATGCAATTTACTAGCTGGCGTGACTTGGAAGAAAATTAAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47571959 609 + 74645514 tataaaatgaaaaaatacattgatGATAATTCTAATGTGTTTTGATAAAGA------------------------CT--TCTCTGGATTTGTACACCTGTCAGAAATAGGATTATGTCATTCTGGTTCTCAGCTCATATAAGaaata-tagatagata-caaaGA-TTAAT-GCTTCAATTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-ACTCACCCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGATAGACCaaagaagcaagaggaaaaaaaa-aaaatcctcatcttTC--TGAT-----------CTAAAAATAACAATTCTACTTCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAACCCTACCTC-TTTTAACACTGTGCCATCATTGCCATA-TGACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTTATTAATCAGATT--CAG--TCTGGTATTTGCAAGTCGAAGTTTCAGACTATTCTGGAATGTGACTGAGTAGGTGAAAAAgaattcacttttaaatattcttaacatttttaaatgcaatttacTAGCTGGCGTGACttggaagaaaattaag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9838348 603 - 75148670 TATAAAATGAAAAAATACATTGATGATAATCCTAATGTGTTTTGATAAAGA------------------------CT--TCTCTGGATTTGTACACCTGTCAGAAATAGGATTATGTCATTCTGGTTCTTAGCTCATGTAAGAAATA-TAGATAGATA-CAAAGG-TTAAT-GCTTCACTTTCACACAGTAACTGCTGGCAGAACTGGAGGTAGAACTCCACCATCTGG-TCCACATGTATGTAGC-ACTCACCCAC-TTCTTTGAAAGATTGCTTGGAAGAAACTAGAGACAGACCAAAGAAGCAAGAGG---AAAAA-AAAATCCTCATTTTTC--TGAT-----------CTAAAAAT--CAATTCTAC-TCTTTT--AACAGG-TAGTTAAAAGAGGACCATCCTAAATTAAGAATAACAACCCTACCTC-TTTTAACACAGTGCCATCATTGCCATA-TGACAGTGGTCAGGCCTAATCAGTTACAAACCCATCT-GC-ATAGG-TTTCTTATTAATCAGATT--CAG--TCTGGTATTTGCAAGTCGAAGTTTCAGACCATTCTGGAATGTGACTGAGTAGGTGAAAAAGAATTCACTTTTAAATATTCTTAACATCTTTAAATGCAATTTACTAGCTGGCGTGACTTGGAAGAAAATTAAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112682870 603 + 159171411 TATAAAATGAAAAAATACATTGGTGATAATTCTAATGTG---TGATAAAGA------------------------CT--CCTCTGGATCTGTATACCTGTCAGAAATAGGATTATGCCATTCTGGTTCTTAGCTCATATAAGAAACA-TAGATAGATA-CAAAGA-TTAAT-GCATCACTTTCACACAGTAACTGCTGGTAGAACTGAAGGTGGGACTCCACCATCTGG-TCCACATGTATGAAGC-TCTCACCCAC-TTCTTTGAAATATTGCTTGGAAGAAACTAGAGATAGACCAAGGAAGCGAGAGG-----AAA-AAAATCTTCATTTTTC--TGAC-----------CTAAAAATAAAGATTCTACCTCTTTT--AACAGG-TAGTTAAAAGAAGACCATCCTAAATTAAGAATAACAATGCTACCTC-TTTTAACACAGTGGCGTTATTGTCATA-TGACAGTGGTCAGGCCTGATCAGTTCCGAATCCATCT-GC-ATAGG-TTTCTTATTAATCAGATTCACAG--TCTGGTATTTGCATGTCTAAGTTTCAGACCATTCTGGAATGTGACTCAGTAGGTAAAAAAGAATTCACTTTCAAAAATTCTTAACGTCTTTAAATGCAATTTACTAGCTGGCGTGACTTGGAAGAAAATTAAG i calJac3.chr5 I 286 I 606 s canFam3.chr9 39253861 578 - 61074082 TATAAAGTCATGAAATTTATTGGTG---ATTCT-ATGTG---TGATAAAGAGAGCCAAATTTAAGGATTATGAATCT--TCCCTGGATTTGTAAGCCTGTCAGATATAGGATCATGCTGTTCTGTTTCCTAGCTCATATAAGAAGTA-----TAGATA-TGGAGA-TTAAC-ACTTTATTTTCACACAGTAATTACTGGTAGA-----------------ACCATCTAGTTCCACATGTATATATTGCCTCATCTACTTTCTTTGAAAGATTACTTGGAAGAAACTAGAGATCGACCAAA--------AGC---AAGGA-TTAGTTTTCATTTTTTCATGATAGGAAATTCAGTTAAAAATAATAATTCTAC----TTT------GG-----------------------AACCAAGTGTCA-----TTATTGC-CTATGGCAAAATGCAGTAATTGTCATATTGACAGTGGCCATGCCTAGTGAATTTTAAACCCACCT-CCTGCAGG-TTTTTAACTAACCAGACT--CAGCCTCCGGTATTTGCATGTAGAAGTTACAGACTCTTCTGGAATGTGTTTTA-TAGGAGACAAAGAATTCACTTCTAGAAGTTCTTAACATCTTTAACAGCAAGGTCCTAACCAGAGTGACTTGGAAGGAAATTAAG i canFam3.chr9 C 0 C 0 e mm10.chr11 99425766 1825 + 122082543 I a score=1602642.000000 s hg38.chr17_JH159146v1_alt 23388 499 + 278131 AAAAAAAT--GAGTG-AAATCTTTTCAC-TTTGGAAAAGAAGGCAATGAGAATAGGTGAG---AATACCTTTTCTGACAAAAGTTGTACTGAATCAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGGCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGCGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTAGTTGCTTATGAGGGTGTCCTggttttag--agaaacagcgctgaggttcagtctcgct-ctactacttggtaactgcttgactttgggaaagtctttatctcatgtcttcatatgagtcctcatttatcctcatatgtaaagtgggg-gtaacataataAGGT-TGAACCTTATTATATATGCTATATAATAGCATATAAA--ATTGCTATTTCTGAAAGTCAGA--AATTATCATATATTG-GAAAGCTTT---AAAAAAATCTTT s panTro4.chr17 66140268 500 - 82630442 AAAAAAAT--GAGTG-AAATCTCTTCAC-TTTGGAAAAGAAGGCAATGAGAATAGGTGAG---AATACCTTTTCTGACAAAAGTTGTACTGAATCAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGGCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGCGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTAGTTGCTTATGAGGGTGTCATggttttag--agaaacagcgctgaggttcagtctcgct-ctactacttggtaactgcttgactttgggaaagtctttatctcatgtcttcatatgagtcctcatttatcctcatatgtaaagtgggg-ataacataataAGGT-TGAACCTTATTATATATGCTATATCATAGCATATAAA--ATTGCTATTTCTGAAAGTCAGA--AATTATCATATATTG-GAAAGCTTT-A-AAAAAAATCTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24666297 519 - 73212453 AAAAAAAT--GAGTG-AAACCTCTTCACTTTTGGAAAATAAGGCAATGAGAATAGGTGAA---AATGCCTTTTCTGACAAAAGTTGTACTGAATCAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATTGGGCTGTT----GTGTCTGGCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGCGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAATTCATGTTGATAATGTTGCTTTGTTATGTAATTAGTTGCTTATGAGGGTGTCATggttttaggaagaaacagccctgaggttcagtctcgctactactacttggtaactgcataactttgggaaagtctttatctcatgtcttcatatgagtcctcatttatcctcatatgtaaagtggggtataataTAATAAGGTCTGAACCTTATTATATATGCTATATAATAGCATATAAAAGATTGCTATTTCTGAAAGTCAGA--AATTATTATATATTGAGAAAGCTTTTA-AAAAAAACCTTT i ponAbe2.chr17 I 1 C 0 s nomLeu3.chr19 47891712 502 - 81552678 GAAAAAATAAGAGTG-AAACCTTTTCAC-TTTGGAAAAGAAGGCAATGAGAATAGGTGAA---AATACCTTTTCTGACAAAAGTTGTACTGAATCAAGTCATGCGTGATGTTAGCCAGCAAAGCTGG---GCATTTGCCACAATT-GGCTGTT----GTGTCTGGCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGTGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTAGTtgcttaagagggtgtcatggttttag--agaaatagccctgaggttcagtctcgct-ctactacttggtaactgcatgactttgggaaagtctttatctcatgtcttcatatgagtcctcgtttatcctcatatgtaaagtgggg-ataatataataAGGT-TGAACCTTATTATATATGCTATATAATAGCATATAAA--ATTGCTATTTCTGAAAGTCAGA--AACTATCATATATTG-GAAAGCTTT-T-AAAAAAATCTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53004738 493 + 80904711 AAAAAAAT--GAGTG-AAACCTC------TTTGGAAAAGAAGGCAGTGAAAATAGGTGGA---AACACCTTTTCTGACAAAAGTTGTGCTGAATGAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGCCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGTGGATAGGCAAG-------------GGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTGGTtgcttaagagggtgtcatggttttag--agaaacagccctgaggttcagtctcgtt-ctactacttgctaactgcatgactttgggaaagtctttatctcatgtcttcatatgagtcctcatttatcctcatatgtaaaatgggg-ataatataataAGGT-TGAACCTTATTACATATGCTATATAATAGCATATAAA--ATTGCAATTTCTGAAAGTCAGA--AATTAGCATATATTG-GAAAGCTTC-T-AAAAAA--CTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52527082 493 + 80997621 AAAAAAAT--GAGTG-AAACCTC------TTTGGAAAAGAAGGCAGTGAAAATAGGTGGA---AACACCTTTTCTGACAAAAGTTGTGCTGAATGAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGCCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGTGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTGGTtgcttaagagggtgtcatggttttag--agaaacagccctgaggttcagtctcgtt-ctactacttgctaactgcatgactttgggaaagtctttatctcatgtcttcatatgagtcctcatttatcctcatatgtaaaatgggg-ataatataataAGGT-TGAACCTTATTACATATGCTATATAATAGCATATAAA--ATTGCAATTTCTGAAAGTCAGA--AATTAGCATATATTG-GAAAGCTTC-T-AAAAAA--CTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47572568 493 + 74645514 aaaaaaat--gagtg-aaaccTC------TTTGGAAAAGAAGGCAGTGAAAATAGGTGGA---AACACCTTTTCTGACAAAAGTTGTGCTGAATGAAGTCATGTGTGATGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGCCTGATGAAAATGACaattagaaaacaacaaaataactgTGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTGGTTGCTTAAGAGGGTGTCATGGTTTTAG--AGAAACAGCCCTGAGGTTCAGTCTCGTT-CTACTACTTGCTAACTGCATGACtttgggaaagtctttatctcaTGTCTTCATATGAGTCCTCATTTATCCTCATATGTAAAACGGGG-ataatataataaggt-tgaaccttattatatatgctatataatagcatataaA--ATTGCAATTTCTGAAAGTCAGA--AATTAGCATATATTG-GAAAGCTTC-T-AAAAAA--CTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9838951 494 - 75148670 AAAAAAAT--GAGTG-AAACCTC------TTTGGAAAAGAAGGCAGTGAAAATAGGTGGA---AACACCTTTCCTGACAAAAGTTGTGCTGAATGAAGTCATGTGTGACGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGCCTGATGAAAATGACAATTAGAAAACAACAAAATAACTGTGGATAGGCAAG-------------TGCCTATTTCA----ACTGTGAA-TCATG-------TATTGCTTTGTTATGTAATTGGTtgcttaagagggtgtcatggttttag--agaaacagccctgaggttcagtctcgtt-ctactacttgctaactgcatgactttgggaaagtctttatctcgtgtcttcatatgagtcctcatttatcctcatatgtaaaacaggg-ataatataataAGGT-TGAACCTTATTATATATGCTATATAATAGCATATAAA--ATTGCGATTTCTGAAAGTCAGA--AATTAGCATATATTG-GAAAGCTTC-TAAAAAAA--CTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112684079 513 + 159171411 aaaaaaaa--GAGTG-AAACCTCTTCAC-TTTGGAAACGAAGGCAATGAAAATAGGTGAA---AATGCCTTTTCTGACAAAAGTTGTGCTGAATCAAGGCATATGTGAGGTTAGCCAGCAAAGCTGG---ACATTTGCCACAATT-GGCTGTT----GTGTCTGGCTGATGAAAATGACAATTAGAAAACAACAAAATAACCGAGGATAGGCAAGTGTAATGTGAAATTGTCATTTTCACATTGCTGTGAA-TCATG-------TATTGC--TGTTATGTAATTGGTtgcttaagagggtgtcatggttttag--ataaacagccccgaggttcagtctcgct-ctactacttggtaactgcatgacttcggaaaagtgtttatctcatgtcttcatattagtccttaattatcctcatctgtaaaatgggg-ataatataataAGGT-TGAACC--ATTATATATGCTCTATAATAGCATACAAA--ATTGCTATTTCTGAAAGTCAGA--AATTATCATATGTTa-aaaatgctt-t-aaaaaatgcttt i calJac3.chr5 I 606 I 369 s canFam3.chr9 39254439 437 - 61074082 AAAAAAAT--GAGAGTGAATCTCTTCAC-TTTGAAAAGCAAAAGAATGAGAATAAGTGAAGATAATATTCTTTCTGACAAAAGTTGTGATAAATCCAGTCATGTGGGATTCT---------GGCTGGACCACATTTGTGACATTT-GGCTGTTTTAAGTGTCTGGCTAGTGAAAATGGCAATCAGAAAACAGCAAAACAACTAAGGAGAGGCAAA-------------TGCTCATTTCA----GGTATGAC-TC-TG-------TAAT----TGTCATGTAATTAG-TGCCTAAAAGGGTATCATGGCTTTAG--A------------Aggttcagtcttgct-ccattacttgataactg--tgactttgggagagtacctatttcatgtcttcatata---------taatcctcatttgaaaaataggg-ataataGAATAAAGT-CAAACC------------------------ATGTGAA--ATTGCTATTTTTTAAAGGTAAAAGAATGATTACATATTG-ACAAGTTC---------------- i canFam3.chr9 C 0 C 0 e mm10.chr11 99425766 1825 + 122082543 I a score=242491.000000 s hg38.chr17_JH159146v1_alt 23887 91 + 278131 ATTCTTTCAATTT-AAAATAATGAATCAAGTGCCTGCTATGTG-TTAGATATTATATTACATCTTAGGAATTCAAAGTGGTACCATTCACATC s panTro4.chr17 66140768 91 - 82630442 ATTCTTTCAATTT-AAAATAATGAATCAAGTGCCTGCTATGTG-TTAGATATTATATTACATCTTAGGAATTCAAAGTGGTACCATTCACATC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24666816 93 - 73212453 ATTCTTTCAGTTTAAAAATAATGAATCAAGTGCGCGCTATGTGTTTAGATATTGTATTACATCTTAGGAATTCAAAGTGGTACCATTCACATC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47892214 91 - 81552678 ATTCTTTCAATTT-AAAATAATGAATCAAGTGCCCACTATGTG-TTAGATGTTATATTACATCTTAGGAATTCAAAGTGGTACCATTCACATC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53005231 91 + 80904711 ATTCTTTCAATTC-AAAATAATGAATCAACTGCCTGATGCATG-TTAGATATTATATTAAATCTTAGGAATTCAAAGTGGTACCATCCACATC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52527575 91 + 80997621 ATTCTTTCAATTC-AAAATAATGAATCAACTGCCTGATGCATG-TTAGATATTATATTAAATCTTAGGAATTCAAAGTGGTACCATCCACATC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47573061 91 + 74645514 ATTCTttcaattc-aaaataatgaatcaACTGCCTGATGCATG-TTAGATATTATATTAAATCTTAGGAATTCAAAGTGGTACCATCCACATC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9839445 91 - 75148670 ATTCCTTCAGTTC-AAAATAAGGAATCAACTGCCTGATGCATG-TTAGATATTATATTAAATCTTAGGAATTCAAAGTGGTACCATCCACATC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112684961 91 + 159171411 attttCTCAATTC-AAAATAATGAATCAAGTGCCTGCTGTGTG-TTAGATATTATATTAAATCTTAGGAATTCAAAGTGGTACCATCTGCATC i calJac3.chr5 I 369 C 0 s canFam3.chr9 39254876 27 - 61074082 ---Cttt---ttt-taaat-------------------------ttattttttatttta---------------------------------- i canFam3.chr9 C 0 C 0 e mm10.chr11 99425766 1825 + 122082543 I a score=3277547.000000 s hg38.chr17_JH159146v1_alt 23978 993 + 278131 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAAGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgagaattaaat-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAATTATTTTCTATATAATAATCAAACTC-AATCCCACTTATTTGCAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTGGAATAC-AATGATTTAGCACACATTGA-TTTTTCCCATAAACATTCATAT-GCAATGATTGCTCACTAAAATGCAAAAAGGGTG-AGGatac-aatatgtg-tttttattg-tttttggatttggcttctttcacttagcat---gt-tttcgaagttcatctctgttatagcatgtatcagtacttcattcctttttattgacga-ataagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcggttgatgga-cacttgaggtgt-tt-cgcttt-ggggcttttatgagtaatgctgctatgaacatttgtgtataaaaggacacatcgtattaa-cctatttatatgaaatgtcca---gagtaggcaaatccgtagagacaggaagtagattagtgg---------ttgttaggggctgggaggaagggaaaa----ggcggtgactactaataggtacaagattt-ccttttggggtgatgaa-gtgtt-ctaaaactagatagtggtgatgg-ttgcaaaacattgtaagcat-actgaagaccactgaattgtacgtttt-gtaagggtgaatttcatggtgtgtgaattatatctcaataaatctgttatt-aaaaaaa---TGAGAGACATTTCATTAAAAATATATGTTCACCATATAAA--GAAAGAGAGGACC--TGATAGTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCAGTAAT--GTTGTTTTTAA s panTro4.chr17 66140859 991 - 82630442 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAAGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgagaattaagt-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAATTATTTTCTATATAATAATCAAACTC-AATCCCACTTATTTGCAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTGGAATAC-AATGATTTAGCACACATTGA-TTTTTCCCATAAACATTCATAT-GCAATGATTGCTCACTAAAATGCAAAAAGGGTG-AGGatac-aatatgtg-tttttattg-tttttggatttggcttctttcatttagcat---gt-tttcgaagttcatctctgttatagcatgtatcagtacttcattcctttttattgacga-ataagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcggttgatgga-cacttgaggtgt-tt-cgcttt-ggggcttttatgagtaatgctgctatgaacatttgtgtataaaaggacacatcgtattaa-cctatttatatgaaatgtcca---gagtaggcaaatccgtagagacaggaagtagattagtgg---------ttgttaggggctgggaggaagggaaaa----ggcggtgactactaataggtacaagattt-ccttttggggtgatgaa-gtgtt-ctaaaactagatagtggtgatgg-ttgcaaaacattataagc---actgaagaccactgaattgtacgtttt-gtaagggtgaatttcatggtgtgtgaattatatctcaataaatctgttatt-aaaaaaa---TGAGAGACATTTCATTAAAAATGTATGTTCACCATATAAA--GAAAGAGAGGACC--TGATAGTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCAGTAAT--GTTGTTTTTAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24666909 1016 - 73212453 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAAATTCGTATGATTCAACCtaatagctt-tacctcacaggattattgtgagaattaaat-gagaaatgc--atgaaacgtttggcaac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAATTATTTTCTATATAATAATCAAACTC-AATCCCACTTATTTGCAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGAATAC-AATGATTTAGTGCACATTGA-TTTTTCCCATAAACATTCATAT-GCAATGATTGCTTACTAAAATGAAAAAAGGATGAAGGatacaaatatgtgttttttattgttttttggatttggcttctttcacttagcct---gtctttcaaagttcatttctgttatagcatgtatcagtacttcattccattttattgacgncataagatctctattgtgtggatantatgacattcttgtttatccattccatcagttgatgaaccacttgaggtgt-tt-cgctttgggggctcttatgagtaatgctgctatgaacacttgtgtataaaaggacacatcgtatgaaccccatttatatgaaatgtcca---gagtaggcaaatccgtagagagaggaagtatattagtgg---------ttgttaagggccgggaggaagaggaaat--ggggggtgactactaataggtacaagattt-ccttttggagtgatcaa-gtgttcctaaaattagatagcggtgatgatttgcaaaacattataagcataaccgaagatcactgaattgtacattttggtaagggtgaatttcatggtgtgtgaattatatctcaataaagctgttatt-aaaaaaa---AGAGAGACATTTCATTAAAAATGTGTGTTCACCATATAAAAGAAAAGAGAGCACC--TGATAGTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCAGTAATAAGTTGTTTTTAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47892305 994 - 81552678 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATGATATATTGGCAAGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgagaattaaat-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaatagatggtggatattattGTTCTTAAATGAATCATGTAATTATTTTCTATATAATAATCAAACTC-AATCCCACTTATTTGCAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGAATAC-AATGATTTGGTGCACATTGA-TTTTTCCCATAAACATTCATAT-GCAATGATTGCTCACTAAAATGCAAAAAGGGTG-AGGatac-aatatgtg-tttttattg-tttttggatttggcttctttcacttagcct---gt-tttcaaagttcatctctgttacagcatgtatcagtacttcattcctttttattgatga-ataagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcagttgatgca-cacttgaggtgt-tt-cgcttt-ggggctcttatgagtaatgctgctatgaacatttgtgtataaaaggacacatcgtatgaa-cccatttgtatgacatgtcca---gagtaggcaaatccgtagagagaggaagtatattagtgg---------ttgttaggggccgggaggaagggaaat----gggggtgactactaacaggtacaagattt-ccttttggggtgatgaa-gtgtt-ctaaaattagatagtggtgatgg-ctgcaaaacattataagcat-accgaagaccactgaattgtacatttt-gtaagggtgaatttcatggtgtgtgaattatatctcaataaagctgttattaaaaaaaA---TAAGAGACATTTCATTAAAAATATATGTTCACCATATAAA--GAAAGAGAGCACC--TGATAGTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCAGTAAT--GTTGTTTTTAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53005322 983 + 80904711 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAGGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgaaaattaaat-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAAGTATTTTCTATATAATAATCAAACTC-ACTCCCACTTATTTACAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGACTAC-AATGATTTAGCGCACATTGATTTTTTCCCATACACATTCATAT-GCAATGATTGCTCACTAAAATGCAGAAAGGGTG-AGGTTAC-AATGTgtg-tttttcttt-tttttggatttggcttctttcacttagcat---at-tttccaagttcatctctgttatagcatgtgttagtacttcattcctttttattgacga-atgagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcagttgatgga-catttgaggtgt-tt-tgcttt-gggactcttatgagtaatgctgctatgaacatttgtgtataaaagggcacatcgtatgat-cccatttatacgaaatgtcca---gagtaggcaaatccgtagagaggggaagtagattagtgg---------ttgtcaggggctgggaggaagggaaat---ggggggtgactactaataggtacaagattt-ccttttgggatgatgaa-atgtt-ctaaaattaggta---gtgacgg-ttgcaaaatattttaagcat-accaaagaccactgaattgtacacatt-gtaagtgtgaatttcatggtgtgtgaattatgtctcaataaagctgttatt-ttaaaaa-----------atttcattaaaaatatatgttcACCATATATAAAAAAAGAGAGCACC--TGATAGTATATGCAGCTTACTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCGGTAAT-----GTTTTTAA i rheMac3.chr16 C 0 I 306 s macFas5.chr16 52527666 986 + 80997621 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAGGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgaaaattaaat-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAAGTATTTTCTATATAATAATCAAACTC-ACTCCCACTTATTTACAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGACTAC-AATGATTTAGCGCACATTGATTTTTTCCCATACACATTCATAT-GCAATGATTGCTCACTAAAATGCAGAAAGGGTG-AGGTTAC-AATGTgtg-tttttcttt-tttttggatttggcttctttcacttagcat---at-tttccaagttcatctctgttatagcatgtgttagtacttcattcctttttattgacga-atgagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcagttgatgga-catttgaggtgt-tt-tgcttt-gggactcttatgagtaatgctgctatgaacatttgtgtataaaagggcacatcatatgat-cccatttatacgaaatgtcca---gagtaggcaaatccgtagagaggggaagtagattagtgg---------ttgtcaggggctgggaggaagggaaat---ggggggtgactactaataggtacaagattt-ccttttgggatgatgaa-atgtt-ctaaaattaggtagtggtgacgg-ttgcaaaatattttaagcat-accaaagaccactgaattgtacacatt-gtaagggtgaatttcatggtgtgtgaattatgtctcaataaagctgttatt-ttaaaaa-----------atttcattaaaaatatatgttcACCATATATAAAAAAAGAGAGCACC--TGATAGTATATGCAGCTTACTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTTGGTAAT-----GTTTTTAA i macFas5.chr16 C 0 I 508 s papAnu2.chr16 47573152 986 + 74645514 CTCAAAAATTCCCAATTCTT-------AGAAA------TTATCATATATTGGCAGGTTCATATGATTCAACCTAATAGCGTCTACCTCACAggattattgtgaaaattaaat-gagaaatgc--aTGAAATGTTTGGC-AC--ACAGGCTcattgtaagtgctcaataaatggtgaatattattattcttaaatgaATCATGTAAGTATTTTCTATATAATAATCAAACTC-ACTCCCACTTATTTACAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGAATAC-AATGATTTAGCGCACATTGATTTTTTCCCATACACATTCATAT-GCAATGATTGCTCACTAAAATGCAGAAAGGGTG-AGGTTac-aatgtgtg-tttttcttt-tttttggatttggcttctttcacttagcat---at-tttcaaagttcatctcTGTTATAGCATGtgttagtacttcattcctttttattgatga-atgAGAT-TCTATTGTGTggata-tattacatt-ttgtttatccatt-catcagttgatgga-catttgaggtGT-TT-TGCTTT-GAGACTcttatgagtaatgctgctatgaacatttgtgtataaaaGGGCACAtcgtatgat-cccatttatatgaaatgtcca---gagtagGCAAATCCGTAGAGAGgggaagtagattagtgg---------ttgtcaggggctgggaggaagggaAAT---GGGGGGTGACTACTAAGAGGTACAAGATTT-CCTTTTGGGATGATGAG-ATGTT-CTAAAATTAGGTAGTGGTGAcag-ttgcaaaatattttaagcat-accgaagaccactgaattgtacacgtT-GTGAGGGTGAATTTCATGGTgtgtgaattatgtctcaataaagctgttatt-aaaaaaa-----------atttcattaaaaatatatgttcaccatatataaaaaaagaGAGCACC--TGATACTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTCGGTAAT-----GTTTTTAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9839536 985 - 75148670 CTCAAAAATTCCCAACTCTT-------AGAAA------TTATCATATATTGGCAGGTTCATATGATTCAACCtaatagcttctacctcacaggattattgtgaaaattaaat-gagaaatgc--atgaaatgtttggc-ac--acaggctcatagtaagtgctcaataaatggtggatattattattCTTAAATGAATCATGTAAGTATTTTCTATATAATAATCAAACTC-ACTCCCACTTATTTACAA-CTTCTGTATCAAGTTTTAAGTCCAATCT----ATTTACTAGAATGC-AATGATTTAGCGCACATTGA-TTTTTCCCATACACATTCATAT-GCAATGATTGCTCACTAAAATGCAGAAAGGGTG-AGGTTAC-AATGTGTG-TTTTTCTTT-Tttttggatttggcttctttcacttagcat---at-tttcaaagttcatctctgttatagcatgtgttagtacttcattcctttttattgacga-atgagat-tctattgtgtggata-tattacatt-ttgtttatccatt-catcagttgatgga-catttgaggtgt-tt-tgcttt-gggactcttatgagtaatgctgctatgaacatttgtgtataaaagggcacatcatatgat-cccatttatatgaaatgtcca---gagtaggcaaatccgtagagagaggaagtagattagtgg---------ttgttaggggctgggaggaagggaaat---ggggagtgactactaataggtacaagattt-ccttttggggtgatgaa-atgtt-ctaaaattaggtagtggtgatgg-ttgcaaaacattataagcat-accaaagaccactgaattgtacacgtt-gtaagggtgaatttcatggtgtgtgaattatgtctcaataaagctgctatt-taaaaaa-----------ATTTCATTAAAAATGTACATTCACCATGTATAAAAAAAGAGAGCACC--TGATAGTATATGCAGCTTATTATCAAAAGGAGACACATTTTGCCTTGAGAAGGGTTTGGATAAT-----GTTATTAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112685052 983 + 159171411 CTCAAAAATTCCCAACTCTTAAAAAAAAGAAA------TTCTCATATAATGGCAAGTTCATATGATTCgagctaatagcttttacctcataggattattgtgagaattaaataaaaaaatgc--atgaagtgtttgcc-ac--cggggctcatagtaagtgctcaagaagtggtggatattattattCTTAAATGAATCACCTAATTATTTTCTATATAATAATCAAACTC-AATCCCACTTATTTATAA-CTTCTATATCAAATTTTAAGTTCAATCT----GTTTACTAGAATAC-AACAATTTAGTGCACATCGATTTTTTCCTATAAACATCCATAT-GCAATGATTGCTCACTAAAATGTGAAAAGGGTG-AGGatac-aatgtgct-t---------tttttggatttggcttctttcacttagcat---gt-tcttgaggttcatctgtgttatagcatgtatcagttcttcattcctttttattgacaa-ataatat-tctattgtgtggata-tagtacagt-ttgtttatccatt-tatcagttgatgga-aacttgacctgtatt-cgcttt-ggggcgcttatgaatagtgctgttataaacatttgtgtataaaagaatacattgtgtgat-tccatttatatgaaatgtcca---gagtagtcaaatccataga----ggaagtagattagtgg---------ttgtt-ggggctgggaggaagggaaat----gggggtaactgctaatagctacaagattt-ccttttggagtgatgaa-atgtt-c-aaaattagatattggtgatgg-ttgcaaaacattataagcat-accaaagaccactgagttgtacatatt-gtaagggtgaatttcatggtgtgtgaattatatctcagtgcagatgttatt-aaaaaaa--ATGGGAGACATTTCATTAAAAATGTATGTTCACCACATAAA------CAGAGCACC--TGATAGTATATGTAGTTTATTATCAAAAGGAGACACATTTTGCATTGAGAAGGGTTTCAGTAAT-----GTTTTTAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99427591 892 + 122082543 CTCATAAAGTCCAATCGTAT-------GAAAATGTTAGTTATTGCCTACGGACAGATTTA-GTGAGTCTACTGGatagtttccatctcataccatcactgtgaggctgaaac-gagaccc-t--atg-agtgcttgtc-actggctagctcacagtgagtgttcaggaaatgttAAA------GGGTTTTAAATGAGCCATCTGGCCCTCTTCCATATAAGGGTCAAATCT-AAAGTCATCATCCTATGA----CAATGTTAAGTCTTAATGTTAATCT----ATTATGAAGGAAACAAATGATACAGGGCAAATTAA-AATTTCCCATTAGCATG-AGAA-ATAGTTATTTTTCACTCAAATGCAAAAGAGGTG-AGAATGC-AGTATGTG-TTAATCCAC-T-------TGTGGCTTCTT----------T---AG-TTTCCATTTTCATGTATATGAATGCAGGT------------TTGCATTTGTGTGGCAA---------TAtg-tgtgtggatg-catgtgaat-gtg-----------tgtgagtgggtgaa-tatgc-atgtgt-gt--gcaag-tgcatgtgtgtgtgtgGTGC----ATGGACACATGTGTGT----GGGTGCAT-------A-TACATGTGTGTTGCAAGTGCACTTGTGTGTGCATGCATGTGG-----GGACCTAGGTTGGTGTCAGACATCCTTGTC------------------CACT----gggaatgagtgccagtgggtatgggctctgtctttgggggtggtggacatgtt-ttaggattag----tggtaatca-ttgtacaac-ccatggatgt-acaggggaccactaagatgcacatgtt-acaaaggtggatttcgcagtttgt-agctgtgtctcactaaagctgttTCT-GAAAGACC-ATGAGAGACATTTTAT----ACTCCAGATTCACCAAATAAA---------GCCACCTTTAATGGT-TAAGCAGTTTATTATGAGACGAAGACACATTCC-CATCCAGGCTAGTTT------T-----GCTCTTAA i mm10.chr11 I 1825 C 0 s canFam3.chr9 39254903 953 - 61074082 --------------------------------------tttttaCATATTGACAAATTCCTACGATTCAACGtaatagcttctatttcatgggattattgtgaaaattaaat-gagaagtgcctataaaatgcctagc-at--actgtttagttcaaagtgctcaataaatggtagatattattatCCTTAAGTGAATCACATTATTATTTTCAATATAA---TCACACTCAAAATCCATTGACTTATAAACTTATATATCAAAATTTAAATCCAAGCTATTAATTTACTAGAATAC-AAGGAGAGAGGGCAAAATGA-TTTTTCCTGTAAATATTTGCAAGGCAGTTACTGCTCACAGAAATGCAAAATGGGAG-AGAATAG----------TCT-------Tttttgtgtctgacttccttcagtaagcatagcgt-tttcaaggttcatccctgttgcattatgtatcagtattttgtta-tttctcttgctag-ataatat-ttttttgtaaggaca-tactccact-----ttatccttt-gatcaattgatgga-catttgagttgt-ttccacttt-gggtctattatgaataatgctgctatgaacatttttgtacaaaagaaaacactgtatgat-tccatttgtaggaaatgtctg---gagtaggcaaattcatagaga--ggaagtcaattagtgg---------ttgcc-agggctggggggaaggtgggttggggggggtgactcctattgg------ggttt-cttttctcagtggtgaa-atgtc-ctaaaactggacagtggcaatag-ttgcacaatcctgtgaacat-attgaagaccactgaattgtgtacttt-acaaggatggattttatggtgtgtgaattatatttcattaaagctgttttt-aaaaaAACAGTGAGAAACATTTCAT----AACACACGTTCACCCCATAAA--GAGAGAGAACACC--TGATGCTTTATGCAGTTTATTATCTTAAGGAGAAGCATTCTGCCTTAAGAAGAGTTTCACTAAT--TTTGTGTTTAA i canFam3.chr9 C 0 C 0 a score=397470.000000 s hg38.chr17_JH159146v1_alt 24971 101 + 278131 TCTATTTCCATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCAGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAAAGCTGTGTTGAGTTTTA s panTro4.chr17 66141850 101 - 82630442 TCTACTTCCATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCAGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCCATGTTGAGTTTTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24667925 102 - 73212453 TCTATTTCCATTTTAAGTATAGTGTACTTACACTCTTATTCTGCTCAGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTTGAGTTTTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47893299 101 - 81552678 TCTATTTCCATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCAGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTTGAGTTTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53006611 101 + 80904711 TCTATTTACATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCCGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTAGACTTTTA i rheMac3.chr16 I 306 C 0 s macFas5.chr16 52529160 101 + 80997621 TCTATTTACATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCCGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTAGACTTTTA i macFas5.chr16 I 508 C 0 s papAnu2.chr16 47574138 101 + 74645514 TCTATTTCCATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCCGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTAGACTTTTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9840521 101 - 75148670 TCTATTTCCATTTTAAGTATAGTGTACTT-CACTCTTATTCTGCTCTGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTAGACTTTTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112686035 101 + 159171411 TCTATTTCCATTTTAAGTATAGTATACTT-CACTCTTATTCTGCTTAGCATTTGTGATT-GAATTTGACTCTCAAATTATTCAAAGAGCTGTGTTGAGTTTTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99428483 99 + 122082543 CTGAACCCCATGTCAATCACCTTGTGCTG-TGTTCTTATTCTCCTCAGCATTTGTGATT-GGAGTTTG-TTTTAAATTATTCAAAGA-CTAAGTTGAGTTTTG i mm10.chr11 C 0 C 0 s canFam3.chr9 39255856 100 - 61074082 TCTACTCCCATTACAAGCATAATGTGCTT-CATTCAAATTCTGCTCAGCATTTGTGATTAGAGTCTGA--CTCAAATTACTTGAAGAACTGAGTTGAATTTTA i canFam3.chr9 C 0 I 199 a score=3833216.000000 s hg38.chr17_JH159146v1_alt 25072 1070 + 278131 AAAGGCAGTGGAAGCAATGGGAAAAA-GCAGATATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCAATAAGATTAACCCAGAAATTGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAAGTGGTTTATTTGCAATTTACATGGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATTGAAATGTATTGCAA-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTACAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCACTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAC-ATTTATATTCAATTACAGAGTCTGATAAATA-GGA-TTCCCGCCA-CCC---CACCCCTTCTAATCACTGCAGAGTATT-AATAGTGCTTTCTT-ATGGCTGATTTCTT--GCAGGGAGCAAAGATAAGATTATAGCCAAATTTCTTTCAAAACCTCAGCAGCATCTCCTTCTGGTAGCTATTTAGATATTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTCTGCTGATTTATAATATTCAACTTTAAATTATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATGCAGAAAATGTGCTTC--TCCCCAAATTTACAAATGTCCTACT---CTTAAAAATTC----A---AGAAATAAATTATCTTGAATTTAAGTGGAATTCAAATTTT-GTCTTGT------TTTTCCTTTTCAGGATGTCAGGATGTTTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CATTCTGAGGAGTGTGCCC--AAGTTCCCAT--GTGGA---GGGTTTC-TTTATGCCATGTACAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT s panTro4.chr17 66141951 1066 - 82630442 AAAGGCAGTGGAAGCAATGGG-AAAA-GCAGATATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCAATGAGATTAACCCAGAAATTGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAAGTGGTTTATTTGCAATTTACATGGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATTGAAATGTATTGCAA-TTTTCAGGAACATTACCTACAAATCGATATTAGGTGGTCTACAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAC-ATTTATATTCAATTACAGAGTCTGATAAATA-GGA-TTCCCGCCA-CCC---CACCCCTTCTAATCACTGCAAAGTATT-AATAGTGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGCAAAGATAAGATTATAGCCAAATTTCTTTAGAAACCTCAGCAGCATCTCCTTCTGGTAGCTATTTAGATATTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTCTACTGATTTATAATATTCAACTTTAA---ATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACTCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATGCAGAAAATGTGCTTC--TCCCCAAATTTACAAATGTCCTACT---CTTAAAAATTC----A---AGAAATAAATTATCTTGAATTTAAGTGGAATTCAAATTTT-GTCTTGT------TTTTCCTTTTCAGGATGTCAGGATGTTTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CATTCTGAGGAGTGTGCCC--AAGTTCCCAT--GTGGA---GGGTTTC-TTTATGCCATGTACAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24668027 1091 - 73212453 AAAGGCAGTAGAAGCAATGGGAAAAA-GCAGATATAGCTCAAAGGTTGTAGAGTTTGTACTGATGCTG-AAAGATCAATGAGATTAACCAAGAAATTGGCTCAATAAGAATACC--AGGGAGTCCCAAAGGGGGNTTTT--ACAATTCAGAAACAGGAACAA---------GTTAGAAAGTGGTTTATTTGCAATTTGCATAGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATGGAAATGTATTGCAATTTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTACAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAC-ATTTATATTCAATTACAGAGTCTGATAAATAGGGA-TTCCCCCCACCCC---CACCCTTTCTAATCACTGCAAAGTATTAAATAGTGCTTTCCTAATGGCCGATTTTCTTGGCAGGGAGCAAAGATAAGATTATAGCCACATTTCTTTCAAAACCTCAGCAGCATCTCCTTCTGGTAGCTATTTAGATATTTTCTTCCACCTCTTTGACTTCAAGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGGATTCATATTAAACATTAAATGTTAATTCAAGCACATGACTCTGCTGATTTATAACATTCAACTTTAAATTATTATTCTTTCTACTTATTTCCTTCTTTTAGAAAAATTATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAGCATGCAGAAAATGTGCTTC--TCCCCAAATTTACAAATATCCTAGT---CTTAAAAATTC----A---AGAAATAAATGATCTTGAATTTAAGTGGAAATCAAATTTT-GTCTTGT------TTTTCCTTTTCAGGATCTCAGGATGTCTCAAAGATAGCAATAGCACAGGCCAAGAAAATCACCCTTGTTCTGAGGAGTGTGCCCCAAAGTTCCCACCGATGGA---GGGTTTCGTTTATGCCATGTACAATGATTTTTAGAATCTCTGGTGTCAT--ATCTGCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47893400 1071 - 81552678 AAAGGCAGTAGAAGCAATAGGAAAAA-ACAGATATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTGAAAAAATCAATGAGATGAACCAAGAAATTGGCTCAATAAGGA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAAGTGGTTTATTTGCAATTTGTTTGGAT-----------------------TCCTATACTTTGTGAGGTTTAGTATAAATGAAGTGTATTGCAT-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTATAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAC-ATTTATATTCAATTACAGAGTCTGATAAATA-GGA-TTCCCCCCA-CCG---CACCCCTTCTAATCACTGCAAAGTATT-AATAGTGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGCAAAGATAAGATTATAGCCAAATTTCTTTCAAAACCTCAGCAGCAACTCCTTCTGGTAGCTATTTAGATATTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTCCGCTGATTTATAATATTCAACTTTAAATTATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATGCAGAAAATGTGCTTC--TCCCCAAATTTACAAATATCCTACT---CTTAAAAATTC----A---AGAAATAAATTATCTTGAATTTAAGTGGAATTCAAATTTT-GTCTTGT------TTTTCCTTTTCAGGATCTCAGGATGTCTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CATTCTGAGGAGGGTGCCC--AAGTTCCCAT--GTGGA---GGGTTTC-TTTATGCCATGTATAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53006712 1067 + 80904711 AAAGGCAGTAGAAACAATGGGAAAAA-GCAGATATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCAATGAGATTAACCAAGAAATTGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAACCAGTTTATTTGCAATTTGCATAGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATTGAAATGTATTGCAA-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTATAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAT-ATTTATATTCAATTACAGAGTCTGATAAATA-GGA-TTTCCCCCA-CCC---CACCCCTTCTAATCACTGCAAAGTATT-AATAATGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGC--AGATAAGATTATAGCCTCATTTCTTTCAAAACCTCAGCAGCATTTCCTTCTGGTAGCCATTTAGATACTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTCTACTGATTTATAATATTCAACTTTAAATTATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATACAGAAAATGTGCTTC--TCCCCAAATTTACAAATATCCTACT---CTTATAAATTC----A---AGAAATAAATGATCTTGAATTTAAGTGGAATTCAGATTTT-GTCTTGT------TTTTCCTTTTCAGGATCTCA-GATGTCTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CGTTCTGAGGAGTGTGCCC--AAGTTCCCAC--ATAGA---GGGTTTC-TTTATGCCATGTACAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52529261 1067 + 80997621 AAAGGCAGTAGAAACAATGGGAAAAA-GCAGAGATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCAATGAGATTAACCAAGAAATTGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAACCAGTTTATTTGCAATTTGCATAGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATTGAAATGTATTGCAA-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTATAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAT-ATTTATATTCAATTACAGAGTCTGATAAATA-GGA-TTTCCCCCA-CCC---CACCCCTTCTAATCACTGCAAAGTATT-AATAATGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGC--AGATAAGATTATAGCCTCATTTCTTTCAAAACCTAAGCAGCATCTCCTTCTGGTAGCCATTTAGATACTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTCTACTGATTTATAATATTCAACTTTAAATTATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATACAGAAAATGTGCTTC--TCCCCAAATTTACAAATATCCTACT---CTTATAAATTC----A---AGAAATAAATGATCTTGAATTTAAGTGGAATTCAGATTTT-GTCTTGT------TTTTCCTTTTCAGGATCTCA-GATGTCTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CGTTCTGAGGAGTGTGCCC--AAGTTCCCAC--ATAGA---GGGTTTC-TTTATGCCATGTACAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47574239 1067 + 74645514 AAAGGCAGTAGAAACAATGGGAAAAA-GCAGAGATAGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCaatgagattaaccaagaaattGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAattcagaaacaggaaaaa---------attagAAACCAGTTTATTTGCAATTTGCATAGAT-----------------------TCCTGTACTTTGTGAGGTTTAGTATAATTGAAATGTATTGCAA-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTATAGCTTGTAATTGATATGCTTCATGATAAAGATGGCAGTAatgatg-ttttaaatattctagtGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCtgagtaaaat-atttatattcaattaCAGAGTCTGATAAATA-Gga-tttccccca-ccc---caccccttctaATCACTGCAAAGTATT-AATAGTGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGC--AGATAAGATTATAGCCTCATTTCTTTCAAAACCTCAGCAGCATCTCCTTCTGGTAGCCATTTAGATACTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTcatattaaacattaaatgttAATTCAGGCACATGACTCTACTGATTTATAATATTCaactttaaattattattctttttacttatttccttcttttagaaaaa-tatgttaaacccatcctctttctcaaaaaatcttaagtccattttataaatag-atacagaaaatgtgcTTC--TCCCCAAATTTACAAATATCCTACT---CTtataaattc----a---agaaataaatgaTCTTGAATTTAAGTGGAATTCagatttt-gtcttgt------ttttccttttcaggaTCTCA-GATGTCTC-AAGATAGCAATAGCACAGGCCaaaaaaaTCACCC-CGTTCTGAGGAGTGTGCCC--AAGTTCCCAC--ATAGA---GGGTTTC-TTTATGCCATGTACAA-GATTTTTAGAATCCCTGGTGTCAT--ATCTGCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9840622 1067 - 75148670 AAAGGCAGTAGAAACAATGGGAAAAA-GCAGAGATCGCTCAAAGGTTGTAGAG-TTGTACTGATGCTG-AAAAATCAATGAGATTAACCAAGAAATTGGCTCAATAAGAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGAAAGCGGTTTATTTGCAATTTGCATAGAT-----------------------TCCTCTACTTTGTGAGGTTTAGTATAATTGAAATGTATTACAA-TTTTCAGGAACATTACCTACAAATTGATATTAGGTGGTCTATAGCTTGTAATTGATGTGCTTCATGATAAAGATGGCAGTAATGATG-TTTTAAATATTCTAGTGCTCATTGGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAT-ATTTATATTCAATTACAAAGTCTGATAAATA-GGA-TTTCCCCCA-CCC---CACCCCTTCTAATCACTGCAAAGTATT-AATAGTGCTTTCTT-ATGGCCGATTTCTT--GCAGGGAGC--AGATAAGATTATAGCCGCATTTCTTTCAAAACCTCAGCAGCATCTCCTTCTGGTAGCCATTTAGATATTTTCTTCCACCTCTTTGACTTC-AGATGACACGACCTTGCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTATATCTGAATTCATATTAAACATTAAATGTTAATTCCGGCACATGACTCTACTGATTTATAATATTCAACTCTAAATTATTATTCTTTTTACTTATTTCCTTCTTTTAGAAAAA-TATGTTAAACCCATCCTCTTTCTCAAAAAATCTTAAGTCCATTTTATAAATAG-ATACAGAAAATGTGCTTC--TCCCCAAATTTACAAATATCCTACT---CTTATAAATTC----A---AGAAATAAATGATCTTGAATTTAAGTGGAATTCAGATTTT-GTCTTGT------TTTTCCTTTTCAGGATCTCA-GATGTCTC-AAGATAGCAATAGCACAGGCCAAGAAAATCACCC-CGTTCTGAGGAGTGTGCCC--AAGTTCCCAC--ATAGA---GGGTTTC-TTTATGCCATGTACAA-TATTTTTAGAATCCCTGGTGTCAT--ATCTGCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112686136 1075 + 159171411 AAAGGCAGTAGAAACAATGGG--AAA-GCAGATATAGCTCGAAGGTTGTAGAG-TTGTACTGGTGCTC-AAAATTCAGTGAGATTAACCAAGAAATTGGCTCAGTAAAAA-ACC--AGGGACTCCCAAAGGGGG-TTTT--ACAATTCAGAAACAGGAAAAA---------ATTAGGAAGAGTTTTATTTGCAATTTACAAAGTTTAGTATAAACTTGCAAAAAATTATACTAAACTTTGTGAGGTTTAGTATAATTGAAACGTGCTTCAA-TTTTCAGGAACATTACGTACAAATTGATGTTAGGTGGTCTGTAGCTTGTGATTGATGTGGTTCATGATAAAGATAGCAGTAAAGATG-TTTTAAATATTCTACTGTGCATTAGATTTCATTTTTGCAGGCAATTTGCAGCTCCTCTGAGTAAAAC-ATTTATATTCAATTACAGAGTTTGATAAATA-GGATTTCCCCCCA-CCC---CACCCCTTTGAATCATTGCAAAGTATT-AATAGTGCTTTCTT-----------------CCAGGGAGCAAAGATACGATTATAGCCAAATTTCTTTCAGAACCTCTGCAGCATCTTCTTCTGGTAGCTGTTTAGATATTTTCTTCCACTTCTCTGACTTC-AGATGACACAACCTTCCCATCCACTACTTCTTGCACGACTGTCTTAATCTTCCTGGTTTTCTTTGTATCTGAATTCATATTAAACATTAAATGTTAATTCAGGCACATGACTTTGCTGATTTATAATATCCAACTTT-----ATTATTCTTTTTACTTATTTCCTTCTTTGAGAAGAA-CATGCTAAAGCCATCCTCTTTATCAAATACTCTTAAGTCCATTTTATAAAGAG-ATGTAGAAAATGTGCTTC--TCCCCAAATTTAAAAATATCCTACT---CTTCCTACCCCTAAAC---AGAAATAAATGATCTTGAATTTAAGAGGAATTCAAATTTT-GTCTTAT------TTTTCCTTTTCAGGATCTCAGGATGTCTC-AAGATAACAATAGCACGGGCCAAGAAAATCACCC-CGTTCTGAAGAATGTGCCC--AAGTTCCCAC--ATGG----GGGTTTC-TTTACACCATGTACAA-GAATTTTAGAATC-CTGGTGTCAT--ATTTGCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99428582 856 + 122082543 AGAGGCAG---------TGGGAGACA-TCAGGAAAGGCTTAAAGGCAGCAAGG----------------AGA---CAATGAGATTAACTGGGAAGTTGCCTCCCTGGAGA-ACC--CG---TTCACTAACGGGG-CTTTTAGCAATTCAGAAACAAGAAAAACAAGACCCCAAAGGAGAGCGGTTTATTTGCTCTTTGCTTGAAC-----------------------TCCTCC-------------------------AATGCTTTAC---TCTACCTGAAC-----------------------TGGTC-------TGTGATGGATGTGCCTTGCAATGAGGACGATTGT----------------------------GCTGGGTTTAATCTT-----GCCCTTTACAGCTCCCTGGAGTGAACC-ATTTATATTTAATTACACAGCTTGATAAATA-GAC-TCCCCCCCC-CCCACACACACTTTAAAGCCACTACACAGTGTT-G---------TCTT------------------CAGCGGGC----------------------------CACAGCTGGAGCAGC--CTCCCTTTGACAGCTGGTTAGACACTCTCTTCTATCTCCTTGACTTC-AGAGGACACGACCTTGCCGTCTACCACTTCTTCCACGACCGTCTTAATCTTCCTGGTTTTCTTGATATCTG----TGTGTCAGACATCAGAGGTTGGTTCAGGCCCACAGCCACCCTG--TTAAACCACTCAACTTT---------------------------TTCTTATACAAATT-TAAGTTGG--------TTTTTATAAAAAAA----AAGCTCA-------------GAACAATGTATATCACTC--TCCCCAAATTTATAAA-GCCTTCAC---CTTCTCATCTC----AGATAGAAATAGACAATCTTGAATAAACACAAAATTCACATTTTAGTTGTAC------ATTTTAACCCCAGGACCTGAGGCTGTTCT------AGCAATAGCATGGGCTAAGAAAGTCACCT-TGTCAT-AGGGGTGTGCCA--AAATCCTCCC--TTGGATGCAGCATTT-TGTGCATCATGTCCAA-GCTTTTTTGGATC-CTGATGTCTTGGGGCTGCT i mm10.chr11 C 0 I 285 s canFam3.chr9 39256155 1048 - 61074082 AAAGGCAGTGGAGACCATGAAAAAAATGCAAGTGTAACTCCAAGCTAGTAGGA-TGGTACCAATATTA-CAAATCTAATGAAATCAACCAAGAAATAGGCTCATTTAAGA-ATCTAAAGGCCCCTGAAAGGAGA-TTTT--GCAATTTAGAAACAGGAAAAG---------TT---AGAGCAGTTCATTTGTGATTTTCAGGTAC-----------------------TCGTCTGCTCTATAAGGTTTAGAGTAATTCAAATGTGCTATAATTTTTCAGGAACATTA---ACGAATTGATAGTAGGTGGTCTCTAGCTTATAATTAATGTGTTTCATAGTAAAGATGGTGGTAGTGATGTTTTTAAATATCCTAGTGCCCAATGGATTTCATTTTTGTAGGTGATTTGCAGCTCCTCTGAGTAAAACAACTTATATTCAATTATGGAGACTGATAAATG-GGC-TTTTGTCCC-CCT---CG--------GATTACCACAAAGCACT-AATGGTGTCTTCTG-ATGGCCGCTTTCTT--ACAGGGAGC-----AAAAACTATAACTACATTTCTTTCAAACTCTCAGCAGCATCTCCA---GGTAGCAGTTTACATATTTTCTTCCACCTCTCTGGTTTC-ACTTGACACAACCATGCCATTCACCACTTCTTCCACGACTGTCTTAATCTTCCTTGTTCTCTTTATATCTGAGTTAAATTTAAGTATAAAATGTTAACTCAGGAGAATGACTCTGCTGGTGTATAATATTCAACTCTAAATCATTATTATCT-TATATATTTTTTTCCT-----AAAA-GAAACCCAACCCATCCTTTTTCTTAA----TCTT--GTCCAATTTATAAATAA-GTGTAGAAAATGTGCCACTGTCCCCAAATTCACAAATTTTCTACTTTCCTTCCAAA-------G---AGAAATATACAATATTGAAT-TAAGCCAAATGCACTTTTC-ATCTTTTTTTTTCTTTTTCTTTTTAGGATCCCAGGATGTCTC-AGGACAGCAATATCTTGGGCCAAGAAAATCACCA-GGTT-GGGGGAGTGTGACA--AACTTCCCGT--TTTGA---GGGTTTC-TTTATGTTATATGCCT-GATTTTCAGAATCCCTAGGGCAAT--ATCTGCT i canFam3.chr9 I 199 C 0 a score=66905.000000 s hg38.chr17_JH159146v1_alt 26142 19 + 278131 CCCTTGAGAATTGGCCTTt s panTro4.chr17 66143017 19 - 82630442 CCCTTGAGAATTGGCCTTt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24669118 19 - 73212453 CTCTTGAGAATTGGCCTTt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47894471 19 - 81552678 CTCTTGAGAATTGGCCTTt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53007779 19 + 80904711 GTTTTGAGAATTGGCCTTt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52530328 19 + 80997621 GTTTTGAGAATTGGCCTTt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47575306 19 + 74645514 CTTTTGAGAATTGGccttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9841689 19 - 75148670 CTTTTGAGAATTGGCCTTt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112687211 19 + 159171411 CTCTTGAGAATTGGCCTCt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39257203 19 - 61074082 CTCTCGAGAATTGATCTCT i canFam3.chr9 C 0 C 0 e mm10.chr11 99429438 285 + 122082543 I a score=409466.000000 s hg38.chr17_JH159146v1_alt 26161 133 + 278131 gctatggt-ttgaatgtgttccctggagttcatgt-gtggaaaacttaatccccaatgtaacagtgttgggaggtgcggcctagtaaaaggtgattagatgatgagggctcttctctc-atggatggattaatgtg s panTro4.chr17 66143036 133 - 82630442 gctatggt-ttgaatgtgttccctggagttcatgt-gtggaaaacttaatccccaatgtaacagtgttgggagatgcggcctagtaagaggtgattagatgatgagggctcttctctc-atggatggattaatgtg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24669137 136 - 73212453 gctatgatgttgaatgtgttccctagagttcatgtggtggaaaacttaatccccaacgtaacagtgttgggaggtgcggcctagtaagaggtgattagatgatgagggctgtgctctcgatggatggattaatgtg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47894490 133 - 81552678 gctatggt-ttgaatgtgttccctggagttcatgt-gtggaaaacttagtccccaatgtaacagtgttgggaggtgcggcccagtaagaggtgattagatgatgagggctcttctctc-atggatggattaatgtg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53007798 133 + 80904711 gctatggt-ttgaatgtgttccctagagttcatgt-gtggaaaacttaatccccaatgtaacagtgttgggaggtggggcctagtaagaggtgattagatgatgagggctctgccctc-atggatggattaatgtg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52530347 133 + 80997621 gctatggt-ttgaatgtgttccctagagttcatgt-gtggaaaacttaatccccaatgtaacagtgttgggaggtggggcctagtaagaggtgattagatgatgagggctctgccctc-atggatggattaatgtg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47575325 133 + 74645514 gctatggt-ttgaatgtgttccctaGAGTTCATGT-GTggaaaacttaatccccaatgtaacagtgttgggaggtggggcctagtaaGCGGTGATTAGAtgatgagggctctgccctc-atggatggATTAATGTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9841708 133 - 75148670 gctatggt-ttgaatgtgttccctagagttcatgt-gtggaaaatttaatccccaatgtaacagtgttgggaggtggggcctagtaagaggtgattagatgatgagggctctgccctc-atggatggattaatgtg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112687230 133 + 159171411 gctatggt-ttgaatgtgttccctagagttcatgt-gtagaaaactcgatccccagtgtaacagtgttgggaggtggggcctagtaagagttgattagataatgaagactctgtcctt-gtggatggattaatgtG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39257222 0 - 61074082 C e mm10.chr11 99429438 285 + 122082543 I a score=150063.000000 s hg38.chr17_JH159146v1_alt 26294 64 + 278131 gttaccatgataatgggttagttattgtgagagtgggctagttctaaaagaaagattagcctcc s panTro4.chr17 66143169 64 - 82630442 gttaccatgataatgggttagttattgtgagagtgggctagttctaaaagaaagattagcctcc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24669273 64 - 73212453 gttaccatgagaatgggttagttattgtgagactgggctagttataaaagcaatatcagcctcc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47894623 64 - 81552678 gttaccatgagaatgggttagttattgtgagagtgggctagttctaaaagcaagattagcctcc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53007931 64 + 80904711 gttaccataggaatgggttagttattgtgagagtgggctagttataaaagcaagatcagccttc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52530480 64 + 80997621 gttaccataggaatgggttagttattgtgagagtgggctagttataaaagcaagatcagccttc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47575458 64 + 74645514 GTTACCATGGGAATGGGTTAGTTATTGTGAGAGTGGGCTAGTTATAAAAGCAAGAtcagccttc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9841841 64 - 75148670 gttaccatgggaatgggttagttattgtgagagtaggctagttataaaagcaagatcagccttc i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39257222 0 - 61074082 C e mm10.chr11 99429438 285 + 122082543 I e calJac3.chr5 112687363 0 + 159171411 C a score=67953.000000 s hg38.chr17_JH159146v1_alt 26358 27 + 278131 tcttgctctctggttctcatggacact s panTro4.chr17 66143233 27 - 82630442 tcttgctctctggttctcatggacact i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24669337 27 - 73212453 tcttgctctctggctctcatgcacact i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47894687 27 - 81552678 tcttgctctctggctctcatggatagt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53007995 27 + 80904711 tttttctctctggctctcatgcacact i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52530544 27 + 80997621 tttttctctctggctctcatgcacact i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47575522 27 + 74645514 tttttctctctggctcTCATGCACACT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9841905 27 - 75148670 tttttctctctggctctcatgcacact i chlSab2.chr16 C 0 C 0 s mm10.chr11 99429723 27 + 122082543 tctctctcactgtctctcactgtcact i mm10.chr11 I 285 I 188 e canFam3.chr9 39257222 0 - 61074082 C e calJac3.chr5 112687363 0 + 159171411 C a score=114023.000000 s hg38.chr17_JH159146v1_alt 26385 46 + 278131 cttttgcacttctactttctgccatgggatgacacagcaagaaggc s panTro4.chr17 66143260 46 - 82630442 cttttgcacttctactttctgccatgggatgacgcagcaagaaggc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24669364 46 - 73212453 cttttgtgcttctactttctgccatgagatgatgcagcaagaaagc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47894714 46 - 81552678 cttttgcacttctactttctgccatgggatgacgcagcaagaaggc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53008022 46 + 80904711 cttttgcacttctactttctgccatgggatgacgcagcaagaaggc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52530571 46 + 80997621 cttttgcacttctactttctgccatgggatgacgcagcaagaaggc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47575549 46 + 74645514 CTTTCGTGCTTCTActttctgccatgggatgatgcagcaagaaggc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9841932 46 - 75148670 cttttgtgcttctactttctgccatgggatgacgcagcaagaaggc i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39257222 0 - 61074082 C e mm10.chr11 99429750 188 + 122082543 I e calJac3.chr5 112687363 0 + 159171411 C a score=377455.000000 s hg38.chr17_JH159146v1_alt 26431 125 + 278131 ccttacaagatgccggcaccttgatattggactttctggcctccagaactgtgagccaagtaaacgtctattgtttgtaaattatccagtctcaggtattctgtcacagcagcagaaaaca-gact s panTro4.chr17 66143306 125 - 82630442 ccttacaagatgccggcaccttgatattggactttctggcctccagaactgtgagccaagtaaacgtctattgtttgtaaattatccagtctcaggtattctgtcacagcagcagaaaaca-gact i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24669410 126 - 73212453 cctcaccagatgccggcaccttgatattggactttctggcctccagaactgtgagccaagtaaatgtctattgtttgtaaattatccagtctcaggtattctgttacagcagcagaaaacaggact i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47894760 125 - 81552678 ccttacaagatgccggcaccttgatactggactttctggcctccagaactgtgagctaagtaaatgtctattgtttgtaaattatccagtctcaggtattctgtcacagcagcagaaaaca-gact i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53008068 125 + 80904711 cctcaccagatgctggcaccttgatattggactttctggcctccagaactgtgagccaagtaaacttctattgttagtaaattattcagtctcaggtattccattacaggagcagaaaaca-gact i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52530617 125 + 80997621 cctcaccagatgctggcaccttgatattggactttctggcctccagaactgtgagccaagtaaacttctattgttagtaaattattcagtctcaggtattccattacaggagcagaaaaca-gact i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47575595 125 + 74645514 cctcaccagatgttggcaccttgatattggactttctggcctccagaactgtgagccaagtaaacttctattgtttgtaaattattcagtctcaggtattccattACAGGAGCAGAAAACA-GACT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9841978 125 - 75148670 cctcaccagatgctggcaccttgatactggactttctggtctccagaactgtgagccaagtaaacttctattgtttgtaaattattcagtctcaggtattccattacaggagcagaaaaca-gact i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112687363 125 + 159171411 cctcaccagatgatggcaccttgataatgggctttctggcctccagaactgtgagccaagtaaccttctactgtttgtaaattatccagtcccaggtattctgttacagcatcagaaaaca-gact i calJac3.chr5 C 0 C 0 e canFam3.chr9 39257222 0 - 61074082 C e mm10.chr11 99429750 188 + 122082543 I a score=37293.000000 s hg38.chr17_JH159146v1_alt 26556 12 + 278131 aaaacaGCCTCA s panTro4.chr17 66143431 12 - 82630442 aaaacaGCCTCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24669536 12 - 73212453 aaaataGCCTCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47894885 12 - 81552678 aaaacaGCCTCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53008193 12 + 80904711 gaaacaGCCTCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52530742 12 + 80997621 gaaacaGCCTCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47575720 12 + 74645514 GAAACAGCCTCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9842103 12 - 75148670 gaaacaGCCTCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112687488 12 + 159171411 aaaacaGCCTTA i calJac3.chr5 C 0 C 0 s mm10.chr11 99429938 12 + 122082543 AGAACCTCCACC i mm10.chr11 I 188 C 0 e canFam3.chr9 39257222 0 - 61074082 C a score=1661683.000000 s hg38.chr17_JH159146v1_alt 26568 526 + 278131 C-TTTAC-TTTTTA--TCAGTGGCATGTAGTTAATAGAAAGCAGCTGAA-------TG-----------TCATAGAAAA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAGTTCTG---T--------TTT--TTTTTTTAAT--GAAAAGAAGAAAAAAGAAACAG-AAAAAAGCATTATTGCTGTTTTG-AAAATGGAATGC-ACTCCT-----G--TCTTTT-ATATTTCAAAG-----T--------CCAAGTGAATGTG-------------------------------TT--ATTGCT---TTCATATATCTTTCCCTTTTACATTGCTT---------TTATTGCAAACTTGAGCATTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GATTTAAAACTGACCAGTTTAATATATGCTAAGAAGTTCCTCTAATTAAAATAACAAAATTACAATGGAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTTATGATTCTCAGACTGGCTCCCGTGGACCTCAGCAGCTTATTGTCTAATTCATGAGCTCTCAATTAGAATTTCC s panTro4.chr17 66143443 530 - 82630442 C-TTTAC-TTTTTA--TCAGTGGCATGTAGTTAATAGAAAGCAGCTGAA-------TG-----------TCATAGAAGA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAGTTCTG-TTT--------TTT--TTTTTTTAAT--GAAAAGAAGAAAAAAGAAATAG-AGAAAAACATTATTGCTGTTTTG-AAAATGGAATGC-ACTCCT-----G--TCTTTT-ATATTTTAAAG-----T--------CCAAGTGAATGTG-------------------------------TTTAATTGCT---TTCATATATCTTTCCCTTTTACATTGCTT---------TTATTGCAAACTTGAGCATTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GATTTAAAACTGACCAGTTTAATATATGCTAAGAAGTTCCTCTAATTAAAATAACAAAATTACAATGGAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATTGTATCTGAAGACAGTTGCTGCTGCCACACTTATGATTCTCAGACTGGCTCCCATGGACCTCAGCAGCTTATTGTCTAATTCATGAGCTCTCAATTAGAATTTCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24669548 555 - 73212453 CTTTTAC-TTTTTAATTCAATGGCATGTAGTTAATAGAAAGCAGCTTGAGT-----TG-----------TCATAAGAAAACCGTGGCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAGTTCTGTTTT--------TTT--TTTTTTTAACTGTAAAAGAAGAAAAAAGAAACAG-AAAAAAGCATTATTGCTGTTTTGAAAAATGGAATGCAACTCCT-----G--TCTTTTAATATTTCAAAG-----T--------CTAAGTGAATGTG-------------------------------TTTTAATGCT---TTCATATATCTTTCCCTTTTACATTGCTT---------TTATTGCAAACTTGAGCATTTTACTTTTTTTTTTTTTTTTAACTTGAAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATATGCTAAGAAGTTCCTCTAATTAAAATAACAAAATTACAATGGAAGTTTAAATCTTGTGTTCTCTTGTT----------GGTATTCTCAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATTCTCAAACTGGCTCCCGTGGACCTCAGCAGCTTATTGTCTAATTCATGAGCTCTCAATGAGAATTTCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47894897 530 - 81552678 C-TTTAC-TTTTTA--TCAGTGGCATGTAGTTAATAGAAGGCAGCTGAG-------TG-----------TCATAGAAAA--CCT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAGTTCTGTTTT--------TTT--TTTTTTTAAT--GAAAAGAAGAAAAAAG-AACAG-AAAAAAGCATTATTGCTGTTTTG-AAAATGGAAAGC-ACTCCT-----G--TCTTTT-ATATTTCAAAG-----T--------CCAAGTGAATGCG-------------------------------TTTTATTGCT---TTCATGTATCTTTCCCTTTTACATTGCTT---------TTATTGCAAATTTGAGCATTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATATGCTAAGAAGTTCCTCTAATTAAAATGACAAAATTACAGTGGAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATTCTCAGACTGGCTCCCGTGGACCTCAGCAGCTTATTGTCTAATTCATGAGCTCTCAATTAAAATTTCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53008205 534 + 80904711 C-TTTAC-TTTTTA--TCCATGGGAGATAGTTATTGGAAAGCAGCTGAG-------TG-----------TCATAGAAAA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAgttctgttttgttttgttttg--ttttTTTAAT--GAAAAGAAGAAAAAAGAAACAG-AAAAAAGGATTATTGCTGTTTTG-AAAATGGAATGC-ACTCTT-----G--TCTTTT-ATATTTCAAAG-----T--------CCAAGTGAATGTG-------------------------------TTTTAATGCT---TTCATGTATCTTTCCCTTTTACATTGCTTG--------TTATTGCAAACTTGAGCGTTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATAAGCTAAGAAGTTCCTCTAATTAAAGTAACAAAATTACAATGTAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATT------CTGGCTCCCGTGGACCTCAGCAACTTATTTTCTAATTCATGAGCTCTCAATTAGAATTTCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52530754 536 + 80997621 C-TTTAC-TTTTTA--TCCATGGGAGATAGTTATTGGAAAGCAGCTGAG-------TG-----------TCATAGAAAA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGGTATTCTGTAgttctgttttgttttgttttgtttttttttAAT--GAAAAGAAGAAAAAAGAAACAG-AAAAAAGGATTATTGCTGTTTTG-AAAATGGAATGC-ACTCTT-----G--TCTTTT-ATATTTCAAAG-----T--------CCAAGTGAATGTG-------------------------------TTTTAATGCT---TTCATGTATCTTTCCCTTTTACATTGCTTG--------TTATTGCAAACTTGAGTGTTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATAAGCTAAGAAGTTCCTCTAATTAAAGTAACAAAATTACAATGTAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATT------CTGGCTCCCGTGGACCTCAGCAACTTATTTTCTAAttcatgagctctcaattagaatttcc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47575732 530 + 74645514 C-TTTAC-TTTTTA--TCCATGGGAGATAGTTATTGGAAAGCAGCTGAG-------TG-----------TCATAGAAAA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATACTCTGtagttctgttttg----gttttt--tttttttaat--gaaaagaagaaaaaagaaacag-aaaaaaggattATTGCTGTTTTG-AAAATGGAATGC-ACtctt-----g--tttttt-atatttcaaag-----t--------cCAAGTGAATGTG-------------------------------TTTTAATGCT---TTCATGTATCTTTCCCTTTTACATTGCTTG--------TTATTGCAAACTTGAGCgttttac-----------tttttaacttgaAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATAAGCTAAGAAGTTCCTCTAATTAAAGTAACAAAATTACAATGGAAGTTTAAATCTTGTGTTGTCTTGTT----------GATGTTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATT------CTGGCTCCTGTGGACCTCAGCAACTTATTTTCTAATTCATGAGCTCTCAATTAGAATTTCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9842115 527 - 75148670 C-TTTAC-TTTTTA--TCCATGGGAGATAGTTATTGGAAAGCAACTGAG-------TG-----------TCATAGAAAA--TGT-GCAAAAATTTAGA--ACTTACCTCTCTCTTCCAGGGTGCTTAACTGATATTCTGTAGTTCTGTTTTG-------TTT--TTTTTTTAAT--GAAAAGAAGAAAAAAGAAACAG-AAAAAAGGATTATTGCTGTTTTG-AAAATGGAATGC-ACTCTT-----G--TCTTTT-ATATTTCAAAG-----T--------CCAAGTGAATGTG-------------------------------TTTTAATGCT---TTCATGTATCTTTCCCTTTTACATTGCTTG--------TTATTGCAAACTTGAGCGTTTTAC-----------TTTTTAACTTGAAAAATACATA------------------GCTTTAAAACTGACCAGTTTAATATAAGCTAAGAAGTTCCTCTAATTAAAGTAACAAAATTACAATGGAAGTTTAAATCTTGTGTTCTCTTGTT----------GATATTCTTAG-------GTATGGTATCTGAAGACAGTTGCTGCTGCCACACTGATGATT------CTGGCTCCCGTGGACCTCAGCAACTTATTGTCTAAttcatgagctctcaattagaatttcc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112687500 520 + 159171411 C-TTTACTTTTTTA--TCAGTGGCAGGTAGTCAATAGAAAGCAGCTGAG-------TG-----------TCATAGAAAA--TGT-GAAAAAATTTAGA--ACTTACCTTTCTCTTTCTGGATGCTTAACTGATACTCCGTAGTTCTGtttt------ttttt--tttttttaatt-tGAAAGAAGAAAAAATAAACAGAAAAAAAGCGTTATTGCTGTTCTG-AAAATGGAATGC-ACTC-----------CTTTC-ATATTTCAAAGTAAAAT--------CCAAGTGAATG---------------------------------------TGCT---TTCATATTTATTTACC-TTTACATTCCTTG--------TCATTGCAAACTTGAGTGTTTTAA-----------------ACTTGAAAAATAAATA------------------GCTTTAAAACTGACCAGTTTATTATATACTGAGGAGTTCCTCTAATTAAAATAACAAAAATACAATGGAAGTTCAAATCTTGTGTTCTCTTGTT----------GATATTCTGAG-------GTATGGTATCTGAAGACAGTTGCTGCCGCCACAT---TGATTCCCAAAGTGACTCCCATAGACCTCGGCAGCTTATTGTCTAATTCATGAGCTCTCAATTTGAATTACC i calJac3.chr5 C 0 C 0 s mm10.chr11 99429950 530 + 122082543 T-TTTAC-TCCC----CCAGTGACAGACAGTTGCCAGGGAGCTGCTGAGATCCCCACA-----------CTACAGGACA--TGT-GCCCAAGCGCAGAACACTTACCCTTCATTTCCAAAGTGCTCAGCTGGTATTCTGTAGTTCTGGG----------TTG--------------TGAAAGAAGCAGAAAGA------AAGACAACATTACTGCCAGGACA-AAGCTGGGGCGC-TTCCCTCCTTGT--CCCTTT-GTTTTCCAATG-----T--------CTGGGTTGATGTG-------------------------------------TGGT---TAAATGTTATTTTCCTCTTTCTGGTCCTTGGACTGTGTTTATCTCATACTGGAGTGTTCTGC-----------TTTTTGGCTTGGAAAAC-------------------------------ACCAGCCTGCTTATCATCCACTG-GAAATTTGTATAGTGAGAAC--TAAAATTAGGATAGAAGTTCAAGTCTATCGGGGTTTTGTTTTGGGGGGGGGGAGTTGGGGGCAGGACAGTGTTATATGTGAAGGTAGCTGCTGCTCCAAGTCTGCCCACTTACAGACTGGCTCCTGTGGGCCTCTGTGGCCTGTGGCTTAATTCATGAGCAGTTAGTGGGAATTTCC i mm10.chr11 C 0 C 0 s canFam3.chr9 39257222 577 - 61074082 -TTTTAC-TTTTCA--CCAGTGGCATTTAATGAGTAGTAAGCTACTGAG-------TGAGGATTCAGTCTCCCAGGAAA--CGT-GTGAAATTAGAAC--ACTTACCTTTCTCCTCTTCAATGTGTATCTGATCATCTGGAATTGTGATTT--------TGC--ATCTTTTAAA--GAAAAGAA----AAAGAAACAT-GAAAAGATGTTATTGCCATTTTG-AAAATGAAGGCC-TGTTCT-----GCTTTTTTT-TTGTTTCAAAA-----TAAAGTCTGCATAGTGTGTGTGTGTGTTGTTGTTGTTGTTTTTTTGGTGTGCGTTTTAATGCTGTGTCTGTACTTTTTCTCCTTCGACCATGCTTA--------TTACTTTGAACTTGAGTTTCTTAC-----------TTTTCAACTTGacacacacacacacacacacacacacacGACTTCAAAACTGACCTGCTTATGCCATATTA-GAAGCTTTTGTA-----------------ACAGTGGAAGTTTAAATCTTATA-----TTATT----------GAGTTTCTTGA-------GTTTGGTAGTAGAAGACAGTTGCCATAGCAACACTGATGATTCTCAAACTGG-TCCCACAGACCTCTGCAGCCTGTTGTTCATTTCATGACCTTTCAAGGAGAATTTTT i canFam3.chr9 C 0 I 186 a score=283246.000000 s hg38.chr17_JH159146v1_alt 27094 78 + 278131 AAAAGGTTATTATGCCTTCAATTATATATTAATGATGAAAATTAATATCAGCATAATCTATATCATTTGGAGAATTAT s panTro4.chr17 66143973 78 - 82630442 AAAAGGTTATTATGCCTTCAATTATATATTAATGATGAAAATTAATATCAGCATAATCTATATCATTTGGAGAATTAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24670103 78 - 73212453 AAAAGGTTATTATGCCTTCAATTATATATTAATGATGAAAATTAATATCAGCATAATCTATGTCATTTGGAGAATTAT i ponAbe2.chr17 C 0 I 6 s nomLeu3.chr19 47895427 78 - 81552678 AAAAGGTTATTATGCCTTCAATTATATATTAATGATGAAAATTAATATCAGCATAATCTATGTCATTTGGAGAATTAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53008739 76 + 80904711 AAAAGGCTGTTATGCCTTCAGTTATATATTAATGATGAAAATTAATATCAGCATAATCTA--TCATTTGGAGAATTAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52531290 76 + 80997621 aaaaggctgttatgccttcagttatatattaatgatgaaaattaatatcagcataatcta--tcatttggagaattat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47576262 76 + 74645514 AAAAGGCTGTTATGCcttcaattatatatttatgatgaAAATTAATATCAGCATAATCTA--TCATTTGGAGAATTAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9842642 76 - 75148670 aaaatgctattatgccttcaattatatattaatgatgaaaattaatatcagcataatcta--tcatttggagaattat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112688020 78 + 159171411 AAAAAGTTATTGTGCTTTCAATTATATATTAATGATAAAAATTAGTATCAGCATAACCTCTGTCATTTGGAGAATTAT i calJac3.chr5 C 0 C 0 s mm10.chr11 99430480 78 + 122082543 AGAAGGTTAGTATGCTCCCAGTTATACATATAACACAAGAATTAACACAAACGTGATCAGTATCGTTTGGAGAACCGT i mm10.chr11 C 0 C 0 s canFam3.chr9 39257985 65 - 61074082 aaaaaGTTATTGTACTTTCAATTATGTATTAATAATAAAAATGAGCAAAAGCATAATCTGTATCA------------- i canFam3.chr9 I 186 C 0 a score=-1927.000000 s hg38.chr17_JH159146v1_alt 27172 21 + 278131 CTCCAAATGATCATGTGGTAG s panTro4.chr17 66144051 21 - 82630442 CTCCAAATGATCATGTGGTAG i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47895505 7 - 81552678 CTTCTAA-------------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53008815 5 + 80904711 CTTCT---------------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52531366 5 + 80997621 cttct---------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47576338 5 + 74645514 CTTCT---------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9842718 5 - 75148670 cttct---------------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112688098 7 + 159171411 CTTCTAA-------------- i calJac3.chr5 C 0 C 0 s mm10.chr11 99430558 5 + 122082543 CTTCT---------------- i mm10.chr11 C 0 C 0 e ponAbe2.chr17 24670181 6 - 73212453 I e canFam3.chr9 39258050 0 - 61074082 C a score=1811271.000000 s hg38.chr17_JH159146v1_alt 27193 469 + 278131 AACTCAGTCCTACCACATGATCTC-------AAGGCTGTACTTGA-TA-TTTTGGGCGTGTGTGTATTTTTTGG-TATATTTTCGTTTTGTTGTTCGT-GGTGAGGCA-TGTGTGAGTA-TAATTGCTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ATATTGACACCTATT-CCTTGATTCTAAGAGCCTTACTTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGTTCAAGTCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCGTTGTTCT-GGCGTTCCATGTTACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCCTTGGTCTCCTCTAGAGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCACTTC s panTro4.chr17 66144072 469 - 82630442 AACTCAGTCCTACCACATGATCTC-------AAGGCTGTACTTGA-TA-TTTTGGGCGTGTGTGTATTTTTTGG-TATATTTTCGTTTTGTTGTTCGT-GGTGAGGCG-TGTGTGAGTA-TAATTGCTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACTTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGTTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCGTTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGTGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCCTTGGTCTCCTCTAGAGTGTGCTCCAGAGACTCTTTCTATGAGCACAAGAAAAATAGGGCACTTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24670187 486 - 73212453 AACTCAGTCCTACCACATGATCTC-------AAGGCTGTACTTGA-TATTTTTGGGCGTGTGTGTACTTTTTGGATATATTTTCGTTTTGTTGTTCGTGGGTGAGGCGCCGTGCGAGTATTAATTGCTTCTGTCCTAGGGATTGCATTTGGTGCTGGGTAAATGAGTTGACAGGG------------GACATTAAAAT-GAAGTGCATACAGA-ACATTGACACCTATTCCCTTGATTCTAAGAGCCTTACTTTATG---TCTTCTCCTTTCCAGAAGGCGGCGGTAAGTAGGCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGGTAATTCATTGTTCTGGGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCTAGCTGTAACGGGGCCTTGGTCTCCTCTAGGGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAACAGGGCATTTC i ponAbe2.chr17 I 6 C 0 s nomLeu3.chr19 47895512 467 - 81552678 --CTCAGTCCTACCACATGATCTC-------AAGGCTGTACTTGA-TA-TTTTGGGCGTGTGTGTACTTTTTGG-TATATTTTCGTTTTATTGTTTGT-GGTGAGGTG-CGTGTGAGTA-TAATTGCTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-CATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACTTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCGTTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCCTTGGTCTCCTCTAGAGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCATTTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53008820 469 + 80904711 AACTCAGTCCTATCACATGATCTC-------AAGGCTGTACTTGA-TA-TTTTGGGCGTGTGTCTACTTTTTGG-TATATTTTCGTTTTGTTGGTGGT-GGTGAGGCG-AGTGTGAGTA-TAATTACTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACCTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCATTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGAAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCTTTGGTCTCCTCTAGGGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCATTTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52531371 469 + 80997621 aactcagtcctatcacatgatctc-------aaggctgtACTTGA-TA-TTTTGGGCGTGTGTCTACTTTTTGG-TATATTTTCGTTTTGTTGGTGGT-GGTGAGGTG-CGTGTGAGTA-TAATTACTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-AACGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACCTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCATTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCTTTGGTCTCCTCTAGGGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCATTTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47576343 469 + 74645514 AACTCAGTCCTATCACATGATCTC-------AAGGCTGTACTTGA-TA-TTTTGGGCGTGTGTCTACTTTTTGG-TATATTTTcgttttggtggtggt-ggtgaggcg-CGTGTGAGTA-TAATTACTTCTGTCCTAGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACCTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCATTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCTTTGGTCTCCTCTAGGGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCATTTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9842723 469 - 75148670 aactcagtcctatcacatgatctc-------AAGGCTCTACTTGA-TA-TTTTGGGCATGTGTCTACTTTTTGG-TATATTTTCGTTTTGTTGTTGGT-GGTGAGGCG-CGTGTGAGTA-TAATTACTTCTGTTCTAGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GG------------GACATTAAAATAGAAGTGCATACAG--ACATTGACACCTATT-CCTTGATTCTAAGAGCCTTACCTTACG---TCTTCTCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCATTGTTCT-GGCGTTCCATGTCACTCCGAATCTGCATCAGTTGGGCCTCCAGAGAGCTCAACAGCGACTGGAGGTTGGCTAACTGGCT-GCTGTAAC-GGGCTTTTGTCTCCTCTAGGGTGTGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGAGCATTTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112688105 465 + 159171411 --CTCAGTCCTGCCACATGATCTC-------AAGGCTGTATTTGA-TA-GTCTGGGTGTGTGTGTACTTTTCGG-TATACTTTTGTTTTGTTGTTGTT-GGTGAGG---TGTGTGAGTA-TAATTGCTTCTGTCCTGGGGATTGCA-TTGGTGCTGGGT-AATGAG-TGACA-GC------------GACATTAAAATAGGAGTACATACAG--ACATTGACACCTATT-TCTTGATTCTAAGAGCCTTACTTTACA---TCTCCTCC-TTCCAGAAGGCGGCGGTAGGTA-GCAATTTCCTGCTCAAGCCGAGTCTTTATGTCAAGAAGGATATGGT--ATTCGTTGTTCT-GGCGTTCTGTGTCACTCCGAATCTGCATCAGTTGGGCTTCCAGAGAGCTCAACAGCAACTGGAGGTTGGCTAACTGGAT-GCTGTAAT-GCGCTTTGGTCTCCTCTAGGGTATGCTCCAAAGACTCTTTCTATGAGCACAAGAAAAATAGGGCATTTC i calJac3.chr5 C 0 C 0 s mm10.chr11 99430563 439 + 122082543 GACTCAGTCCTGCCCCA-GACCTCC--TTCAAAGGCTA---TTGA-TA-TTTGGGATGC-TTTACACTGTTTGG-TGCATTTTTGTCTCATTG----T-----------CCTGTGTGTA-GCATTGCTGTTGTGCTGGGGGTTGCC------------T--------TGACA-AG------------GACTGTGAAGGAGAGTCATAAACAG--ACAGGGGCACACATT-CCGTGATGCTCAGAGCCTTACTTTATA---TCTTCTCC-CTCCAGAAGGCGGCGGTAGGTG-GCGATCTCCTGCTCAAGCCGGGTCTTTATGTCGAGAAGGATGTTGT--GTTCTTGGTTCT-GGCGTTCTGTGTCACTCCTGATCTGCATCAGTTGGGCCTCCAGGGAGCTCAGCATCTCCTGGATGGCTGCCAACTGGCT-GGCGTAAC-GAGCCTTGACGTCCTCTAGGTTGCGCTCCAGAGACTCTTTCTAAGCATGCAAGACAAAGAGGGTGATTC i mm10.chr11 C 0 C 0 s canFam3.chr9 39258050 475 - 61074082 ------GTCCCA-CACATGACCTCAGGTAAAAAGGCCATACCTGGTTA-TTTGGGGGATGGGTGTACTTTT--G-TATATTTTTGTTTTGTTGTTTGT-----------GATATGTGTG-CAGTTGCTTTTGTGCTAGGGATTGCA-TTCTTGCTGGGG-AATGAG-TGACA-GGGTTTAATGTATCGATGTTTAAATAGTACAGCAGGTAGACACACTGGCACATAC--CTTGGATTCTAACAGACTTACCTGCCGTCATCTTCCCC-TTCCAGAAGGCGGCGGTAAGTA-GCAATTTCCTGCTCAAGTCGGGTCTTTATGTCAAAGAGAATATTGT--ATTCGTTGCTCT-GGTATTCTGTCTCGGCCCGTATCTGCGTCAGTTGGACTTCTAGGTTGTCCAGTACTGTCTGGATGGTGGCCAGTTTGTG-ACTGTAAC-AATCTTTGGTGTTGTCTAGTGTATGCTCCAAGGTTTCTTTCTATAAGCATAAGAAAAAGTGGATGTTTC i canFam3.chr9 C 0 I 931 a score=1447791.000000 s hg38.chr17_JH159146v1_alt 27662 400 + 278131 TTATGTGAGGACTTGATTCAAGAGATGGGTTAATTTTAATTTCCTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTATATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCTACTGTTCTTTCAGTGCGGCGCATTGTAGCATTGTTCT-CAGTACTTGCTT-CCCCACTGTGTGAAGATGTTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--Aattgcaggattagattcctttaatccattgacacctggct-gggtcatgtgactctctttggttaataaaatgcaggtcaaactgacaaat s panTro4.chr17 66144541 400 - 82630442 TTATCTGAGGACTTGATTCAAGAGATGGGTTAATTTTAATTTCTTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTATATTTCTAGCTCCATCTCCCACTCTTCCCAACT-CGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCTACTGTTCTTTCAGTGTGGCGCCTTGTAGCATTGTTCT-CAGTACTTGCTT-CCCCACTGTGTGAAGATGTTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--Aattgcaggattagattcctttaatccattgacagctggct-gggtcatgtgactctctttggttaataaaatgcaggtcaaactgacaaat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24670673 406 - 73212453 TTATCTGAGGACTTGATTCAAGAGATGGGTCAATTTTAATTTCTTTT--GAGAAGGGTCTCTGCAGTTCATCGACTGTGGGCATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACTAAGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTAC----TTGTAGCTTTGCACCTACTGTTCTCTCAGTGTGGCACATTGTAGCATTGTTCTCCAATATTTGCTTCCCCCACCATGTGAAGATGTTATATCTCTCACTCCTTCGTCAGACCTGGTCCATGTGATCTGTGGCATTTCCC--Aattgcaggattagattcctttaatccattgacacctggctggggtcatgtgactctctttggttaataaaatgcaggtcaaactgacaaat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47895979 400 - 81552678 TTATCTAAGGACTTGATTCAAGAGATGGGTCAGTTTTAATTTCTTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTATATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTAC----TTGTAGCTTTGCACCTACTGTTCTCTCAGTGCGACACATTGTAGCATTGTTCT-CAATATTTGCTT-CCCCACTGTGTGAAGATATTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--AATTGCAGCATTAGATTCCTTTAATCCATTGACACCTGGCT-Gggtcatgtgactgtctttggttaataaaatgcaggtcaaactgacaaat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53009289 400 + 80904711 TTGTCTAAGGACTTGATTCAAGAGATGGGTCAATTTTAATTTATTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGTATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGATAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCCACTGTTCTCTCAGTGCAGCACATTGTAGAATTGTTCT-CAATATTTGCTT-CCCCACCATGTGAAGATGTTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--AGTTgcaggattagattcctttaatccattgacagctggct-gggtcatgtgactctctttggttaatgaaatgccggtcaaactgacaaat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52531840 400 + 80997621 TTATCTAAGGACTTGATTCAAGAGATGGGTCAATTTTAATTTATTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCCACTGTTCTCTCAGTGCAGCACATTGTAGAATTGTTCT-CAATATTTGCTT-CCCCACCATGTGAAGATGTTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--AGTTgcaggattagattcctttaatccattgacagctggct-gggtcatgtgactctctttggttaatgaaatgccggtcaaactgacaaat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47576812 400 + 74645514 TTGTCTAAGGACTTGATTCAAGAGATGGgtcaattttaatttatttt--gagaagggTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCCACTGTTCTCTCAGTGCAGCACATTGTAGAATTGTTCT-CAATATTTGCTT-ccccaccatgtgaagatgttaTACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--AGTTGCAGGATTAGATTCCTTTAATCCATTGACACCTGGCT-GGGTCATGTGACTCTCTTTGGTTAATGAAATGCCGGTCAAACTgacaaat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9843192 399 - 75148670 TTGTCTAAGGACTTGATTCAAGAGATGGGTCAATTTTAATTTATTTT--GAGAAGGGTCTCTGCAGTTCATC-ACTGTGGGCATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCCACTGTTCTCTCAGTGCAGCACATTGTAGAATTGTTCT-CAATATTTGCTT-CCCCACCATGTGAAGATGTTATACCTCTCACTCCTTCATCAGACCTGG-CCATGTGATCTGTGGCATTTCTC--Aattgcaggatta-attcctttaatccattgacacctggct-gggtcatgtgactctctttggttaatgaaatgccggtcaaactgacaaat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112688570 396 + 159171411 TTATCTAAGGACTTGATTCAAGAGATGGGTCAATTTTCATTTCTTTT--CAGAAGGGTTTCTGCAGCTCGTC-ACTGTGGGCATGGTGTGTATTTCTAGCTCCATCTCCCACTCTTCCCAACT-AGGCAACCTCAGCCAGCCAGCTAGGATCATTAGCTCTTGGGGTTTTTCTTTGC----TTGTAGCTTTGCACCCACTGTTCTCTCAGTGAGGGACATTGTAGT-TTGTTCT-CAATATTTGCTTTCCCCACCATGTGAAGATGTTTTACCTCTCATTCCTTCATCAGACTTGG-CCATGTGATCTGTGGCATTTCTC--Aattgcaggattagactcctttaatccattgacagctggct-gggtcatgtga----ctttggctaataaaatgcagatgaagctggcaaat i calJac3.chr5 C 0 C 0 s mm10.chr11 99431002 384 + 122082543 TTATTTGTTGACTTGA---AGCAGGCAGCACAGTTCTTGTATCTTTTTGGGGAAGAGTTT------TTTGCCGCCTTTGAGCACTACCTGTTTTTCTAGC----TCTTTCATTCGTTCTGTCT-AGGAAGCCTCAGCTGGCCAGCTACAACCACCATCCCTTGAATTTTTGCTTTGTGTTGCTAGAGCTTTGTGCCTATTGTTCCCTCAGTGTAATGCACTGTGCTA-TGGCAT-CAACTTATACTT-CCTTGCC-TGGGAGGAGGCTGTGTCTGCCATGCCTTTAGCAGGCCTGG-CCATGTGATTCATGGTGTC-------AATGGAGGACTAGA-TCTCTCATCCCATTGGGACCAGGCT-TGATCTTGTAACT--CTTTGGCTGTTGACATGCAGGCAATACTGACAAAG i mm10.chr11 C 0 C 0 s canFam3.chr9 39259456 339 - 61074082 TTAGTTGAAGACTT-----AAGAGGTGGTTCAATTTTAATTTCTTTT--GAGAA---TTTTGACAGCTAGTC-ACTGTGGGCATTATTCATATTTCTAGCTTTGTCTCCCACTGTTTCCATCTAAGGCAACCTCAGCCAGCTA-CTAGGACCACTAG-----GGGTCTTTTGTTTGT----TTTTAGCTCCACACTCACTGGTGTCTTACTGTGGTATATTGTATTATTGTTCT-TAATATTTGCCT-CCTCT--------------------------------------------CCTCCTGATTTGTGGTGACCCTCCTAAGTGGAGGAGTAGGTT-------TTGGTGGATGCCaggct-tgatcatgtgactttctttggctaaggaaatgtaggtgaaactgacaaat i canFam3.chr9 I 931 C 0 a score=50911.000000 s hg38.chr17_JH159146v1_alt 28062 14 + 278131 gccttttctttttc s panTro4.chr17 66144941 14 - 82630442 gccttttctttttc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24671079 14 - 73212453 gcgttttctttttc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47896379 14 - 81552678 gccttttctttttc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53009689 14 + 80904711 gccttttctttttc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52532240 14 + 80997621 gccttttctttttc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47577212 14 + 74645514 gccttttctttttc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9843591 14 - 75148670 gccttttctttttc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112688966 14 + 159171411 gccttttctttttt i calJac3.chr5 C 0 C 0 s mm10.chr11 99431386 14 + 122082543 TCTTTTTTTTTCTC i mm10.chr11 C 0 C 0 e canFam3.chr9 39259795 0 - 61074082 C a score=766136.000000 s hg38.chr17_JH159146v1_alt 28076 263 + 278131 ---tttttttttttgggacggagtcttgctctgtcgccca-ggctggagtgcagtaatgtgatcgcagctcactgcaacctctgcc-tcctgggttcaagcgattctcctgcctcaacctcccaagtagctgggattacaggcacacaccaccatgcccagcttatttttgtatctttagtagagatgg-ggtttcaccatattgg--ccagctggtctcaacctcctgacctcaaatgatcctcctgccttggcctcccaaaggacaaat s panTro4.chr17 66144955 263 - 82630442 ---tttttttttttggggcggagtcttgctctgtcgccca-ggctggagtgcagtaatgtgatcgcagctcactgcaacctctgcc-tcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacacaccaccatgcccagcttatttttgtatctttagtagagatgg-ggtttcaccatattgg--ccagctggtctcaaactcctgacctcagatgatcctcctgccttggcctcccaaaggacaaat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24671093 271 - 73212453 ttttttttttttttgagatggagtcttgctctgttgcccatggctggagtgcagtagtgcgatctcggctcactgcaacctctgccatcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacacaccaccatgcccagcttatttttgtatctttggtagagatggaggtttcaccatattgggccaggctggtctcaaactcctgacctcaaatgatcctcctgccttggcctcccaaaggacaaat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47896393 264 - 81552678 ---tttgtttttctgagacggagtcttgctctgtcaccca-ggctggagtgcagtagtgggatctcggctcactgcaacctctgcc-tcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacacatcaccatgcccagcttatttttgtatctttagtagagatgg-ggtttcaccatattgg-ccaggctggtcttgaactcctgacctcaagtgatcctcctgccttggcctcccaaaggacaaat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53009703 262 + 80904711 ---tttttttttttgagacggagtgttggtctgttcccca-ggctggagtgcagtagtgcgatctcggctcactgcaacctctgcc-tcctgggatcaagcgattctcctgcctcagcctcc--agtagctgtgattataggcacacaccatcatgcccagcttatttttgtatctttagtagagatgg-agtttcaccatattgg-ccaggctggtctcgaactcctgacctcaagtgatcctcctgccttggcctcccaaaggacaaat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52532254 262 + 80997621 ---tttttttttttgagacagagtgttgctctgttcccca-ggctggagtgcagtagtgcgatctcggctcactgcaacctctgcc-tcctgggatcaggcgattctcctgcctcagcctcc--agtagctgtgattataggcacacaccatcatgcccagcttatttttgtatctttagtagagatgg-agtttcaccatattgg-ccaggctggtctcgaactcctgacctcaagtgatcctcctgccttggcctcccaaaggacaaat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47577226 262 + 74645514 ---tttttttttttgagacggtatgttgctctgttcccca-ggctggagtgcagtagtgcgatctcggctcactgcaacctctgcc-tcctgggatcaagcgattctcctgcctcagcctcc--agtagctgtgattataggcacacaccatcatgcccagcttatttttgtatctttagtagagatgg-agtttcaccatattgg-ccaggctggtctcgaactcctgacctcaagtgagcctcctgccttggcctcccaaaggacaaAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9843605 262 - 75148670 ---tttttttttttgagacggagtcttgctctgtccccca-ggctggagtgcagtagtgtgatcttggctcactgcaacctctgcc-tcctgggatcaagtgattctcctgcctcagcctcc--agtaactgtgattataggcacacaccatcatgcccaacttatttttgtatctttagtagagatgg-aatttcaccatattgg-ccaggctggtctcgaactcctgacctcaagtgatcctcctgccttggcctcccaaaggacaaat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112688980 256 + 159171411 -----------tttgacacagagtcttgctctgtcgccca-agctggagtgcagtggtgtgatctcggctcactgcaatctccacc-tcctgggttcaagcgattctactgcctcaccctcccaagtagctgggattacaggcgcatgccaccatgcccagttaatttttgtgtctttagtagagacag-ggtttcaccatactga-ccaggctggtcttaaactcctgacctcaagtgatcctcctgccttggcctcccaaaggacaaat i calJac3.chr5 C 0 C 0 e canFam3.chr9 39259795 0 - 61074082 C e mm10.chr11 99431400 0 + 122082543 C a score=20967.000000 s hg38.chr17_JH159146v1_alt 28339 7 + 278131 gcc-tttt s panTro4.chr17 66145218 7 - 82630442 gcc-tttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24671364 8 - 73212453 gccttttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47896657 7 - 81552678 gcc-tttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53009965 7 + 80904711 gct-tttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52532516 7 + 80997621 gct-tttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47577488 7 + 74645514 GCT-TTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9843867 7 - 75148670 gct-tttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112689236 7 + 159171411 gcc-tttt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39259795 7 - 61074082 gcc-tttg i canFam3.chr9 C 0 C 0 e mm10.chr11 99431400 0 + 122082543 C a score=928939.000000 s hg38.chr17_JH159146v1_alt 28346 266 + 278131 ctaag-gagaagctttaagagctatcaagtgg-accaaccattgctc-ttttctttctgccaggacact-ggcatgtcctaggtagggcctacccctttagccttgcccttggaAAGGAAATGT------------------------CACGGTGGATGTAGTATCATGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGCTTAC-CACAACATAA-TTTGTCATGGGCTTGCTGATTTGCTTGGCCTGGAATGT-CTCTA-GTCCATTCTCCATCTTAAAATTTTATCTTAGATTTT s panTro4.chr17 66145225 266 - 82630442 ctaag-gagaagctttaagagctatcaagtgg-accaacaattgctc-ttttctttctgccaggacact-ggcatgtcctaggtagggcctacccctttagccttgcccttggaAAGGAAATGT------------------------CACGGTGGATGTAGTATCATGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGCTTAC-CACAACATAA-TTTGTCATGGGCTTGCTGATTTGCTTGGCCTGGAATGT-CTCTA-GTCCATTCTCCAGCTTAAAATTTTATCTTAGATTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24671372 273 - 73212453 ctaagcgagaagctttaagagctatcaagtggaaccaaccattgctcgttttctttctgccaggacactgggcatgtcctaggtagggcctactcctttagccttgcccttggaaaggaaatgt------------------------catggTGGATGTAGTATCGTGGCTGCAGGCCACTGTGGTTTGAGGGATTCCTGGTTACACACAACATAA-TTTGTCATGGGCTTGCTGATTTGCTTGGCCTGGAATGTGCTCTA-GTCCATTCTCCAGCTTAAAATTTTATCTTAAATTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47896664 266 - 81552678 ctaag-gagaagctttaagagctatcaagtgg-accaaccattgctc-ttttctttctgccagcacact-ggcatgtcccaggtagggcctacccctttagccttgcccttggaagggaaatgt------------------------catggTGGATGTAGTATTGTGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGCTTAC-CACAACATAA-TTTGTCATGGGCTTGCCGATTTGCTTGGCCTGGAATGT-CTCTA-GTCCATTCTCCAGCTTAAAATTTTATCTTAAATTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53009972 266 + 80904711 ctaag-gagaagctttaagagctatcaagtgg-cccaaccattgctc-ttttctttctgccagaacact-ggcttgtcctaggtagggcctacccctttagccttgcccttggaAAGGAAATGT------------------------CATGATGGATGTAGTATTGTGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGGTTAC-CACAGCATAA-TTTGTCATGGGCTGGCTGGTTTGCTTGGCCTGGAATGT-CTCTA-GTTCATTCTCCAGCTTAAAATTGTATCTTAAATTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52532523 266 + 80997621 ctaag-gagaagctttaagagctatcaagtgg-cccaaccattgctc-ttttctttctgccagaacact-ggcttgtcctaggtagggcctacccctttagccttgcccttggaAAGGAAATGT------------------------CATGATGGATGTAGTATTGTGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGGTTAC-CACAGCATAA-TTTGTCATGGGCTGGCTGGTTTGCTTGGCCTGGAATGT-CTCTA-GTTCATTCTCCAGCTTAAAATTGTATCTTAAATTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47577495 266 + 74645514 CTAAG-GAGAAGCTTTAAGAGCTATCAAGTGG-CCCAACcattgctc-ttttctttctgccaGAACACT-GGCTTGTCCTAGGTAGGGCCTACCCCTTTAGCCTTGCCCTTGGAAAGGAAATGT------------------------CATGATGGATGTAGTATTGTGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGGTTAC-CACAGCATAA-TTTGTCGTGGGCTGGCTGGTTTGCTTGGCCTGGAATGT-CTCTA-GTTCATTCTCCAGCTTAAAATTGTATCTTAAATTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9843874 266 - 75148670 ctaag-gagaagctttaaaagctatcaagtga-cccaacaattgctc-ttttctttctgccagaacact-ggcttgtcctaggtagggcctacccctttagccttgcccttggaAAGGAAATGT------------------------CATGATGGATGTAGTATTGTGGCTGCAGGCCACTGTGGTTTGAGGGATT-CTGGTTAC-CACAGCATAA-TTTGTCATGGGCTGGCTGGTTTGCTTGGCCTGGAATGT-CTCTA-GTTCATTCTTCAGCTTAAAATTGTATCTTAAATTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112689243 263 + 159171411 ctaag-gagaagctttaagagctatcaagtgg-cccaatcattactc-tcttctttctgccaggacact-ggcaagtcccaggtagggtctacccctttagccttacccctggagAAGAAATGT------------------------CACAATGGCTGGAGTATTGTGGCTGTAGGCCACTGTGGTTTGAGGGATT-CTGGTCAC-CAAAG--TAA-TGTCTCATGGGCTGGCTGATTTGCTTTGCCTGGAAT-T-CTCTA-GTCCATTCTCCAGCTTAAAATTTTATCTTAAGTTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99431400 222 + 122082543 CTGAG-ATTCAACTCTAAGAGTTGCCCCACAG-CTTAGACCTTTCTC-TCTTCTTTTCACC---ACAGT-GATATGACTCAGAC-TGGTCTGTCCCTTTAGCCCTGACCCCTAAAGTGGAATGC------------------------CATA-------------------------------------GAGTCATC-TCCAGAAT---CAACCTAA-CTTGCTGTGGCCCGATGGATTTGCTTAGCCTGTGATGT-CTCTA-CTCCTTTCCTCAAACTTAAAGCTCATCTTTGA-TTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39259802 283 - 61074082 tggag-gaggagctttaggaactaacacatgg-tctggccattactc-ttttctttctgctgcaacact-ggcatgccttggctagagtctcctcccttagccttacccctggagtggaaatgtcacggagcggaactgcagccaacccatgatggatgtagtgttgt---tataagccactgtgatttggggg----ttgttAAC---AAGCATAATTTTATCAGGAGCTGACTGATTTGCTTAGCCTGGAATGT-CTTTACCTCTATTCTGCAACTACAAATT-TATCTCAAGTTTT i canFam3.chr9 C 0 I 2 a score=40848.000000 s hg38.chr17_JH159146v1_alt 28612 11 + 278131 GAGATCTGGTA s panTro4.chr17 66145491 11 - 82630442 GAGATCTGGTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24671645 11 - 73212453 GAGATCTGGTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47896930 11 - 81552678 GAGATCTGGTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53010238 11 + 80904711 AAGATCTGGTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52532789 11 + 80997621 AAGATCTGGTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47577761 11 + 74645514 AAGATCTGGTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9844140 11 - 75148670 AAGATCTGGTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112689506 11 + 159171411 AAGATCTGGTA i calJac3.chr5 C 0 C 0 s mm10.chr11 99431622 11 + 122082543 AAGATCCGGGA i mm10.chr11 C 0 C 0 e canFam3.chr9 39260085 2 - 61074082 I a score=609724.000000 s hg38.chr17_JH159146v1_alt 28623 206 + 278131 TAatggacacatacaggggaatagcagacatgggggcctaacagagggtggagggtaggaggagggagaggatcaggaaaaataaccaatgggtattaggtttaatacc---tgagtgatgaaataacctgtacaacaaatccccatgacacaagtttaactac-atcataaatctg-cacatgtactcctgaacttaaaaGTTAC--AAGAA s panTro4.chr17 66145502 206 - 82630442 TAatggacacatacaggggaatagcagacacgggggcctaacagagggtggagggtaggaggagggagaggatcagaaaaaataaccaatgggtattaggtttaatacc---tgagtgatgaaataacctgtacaacaaatccccatgacacaagtttaactac-atcataaatctg-cacatgtactcctgaacttaaaagttac--aaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24671656 211 - 73212453 TAatggacacatacaggggaatagcagacacgggggcctaacagagggtggagggtaggaggagggagaggatcaggaaaaataaccaatgggtattaggtttaataccccttgagtgatgaaataacctgtacaacaaatccccatgatacaagtttaactacgatcataaatctgccacaagtacccctgaacttaaaagttac--aaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47896941 206 - 81552678 TAatggacacatacaggggaatagcagacacgggggcctaacagagggtggagggtaggaggagggagaggatcaggaaaaataaccgatgggtattaggtttaatacc---tgagtgatgaaataacctgtacaacaaatccccatgacacaagtttaactat-atcataaatctg-cacaagtacccctgaacttaaaagttac--aaaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53010249 205 + 80904711 TAatggacacatacaggggaatagcagacacgggggcctaacagaggctggagggtaggaggagggagaggatcaggaaaaataacaaatgggtattaggcttaatacc---tgagtgctgaaataacctgtacaacaaacccccatgacacaagtttaactat-atcataaatctg-catat-tacccctgaacttaaaagttat--aaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52532800 205 + 80997621 TAatggacacatacaggggaatagcagacacgggggcctaacagaggctggagggtaggaggagggagaggatcaggaaaaataacaaatgggtattaggcttaatacc---tgagtgctgaaataacctgtacaacaaacccccatgacacaagtttaactat-atcataaatctg-catat-tacccctgaacttaaaagttat--aaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47577772 205 + 74645514 TAATGGACACATACAGGGGAATAGCAGACACGGGGGCCTAACAGAGgctggagggtaggaggagggagaggatcaggaaaaataacaaatgggtattaggcttaatacc---tgagtgatgaaataacctgtacaacaaacccccatgacacaagtttaacTAT-ATCATAAATCTG-CCTat-tacccctgaacttaaaagttat--aaaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9844151 205 - 75148670 TAatggacacatacaggggaatagcagacacaggggcctaacagaggctggagggtaggaggagggagaggatcaggaaaaataacaaatgggtattaggcttaatacc---tgagtgatgaaataacctgtacaacaaacccccatgacacaagtttaactat-atcataaatctg-catat-tacccctgaacttaaaagttat--aaaaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112689517 206 + 159171411 TAatggacacacagaggggaatagcagacacggggacctaac--agggtggagaatggaaggagggagaggatcaggaagaataactgatgcgtattaggcttaatacc---tgagtgatgtaataacctgtgcaacaaacccccacgaaacaagtttaactat-atagtatacctg-cacatgcacccctgaacttaacagttacagaaaaa i calJac3.chr5 C 0 C 0 e canFam3.chr9 39260085 2 - 61074082 I e mm10.chr11 99431633 0 + 122082543 C a score=29082.000000 s hg38.chr17_JH159146v1_alt 28829 9 + 278131 GATCTGGTT s panTro4.chr17 66145708 9 - 82630442 GATCTGGTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24671867 9 - 73212453 GATCTGGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47897147 9 - 81552678 GATCTGGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53010454 9 + 80904711 TATCTGgtt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52533005 9 + 80997621 TATCTGGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47577977 9 + 74645514 tatctgGTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9844356 9 - 75148670 TATCTGGTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112689723 9 + 159171411 GAACTGGTT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39260087 9 - 61074082 GGTCTAGTT i canFam3.chr9 I 2 C 0 e mm10.chr11 99431633 0 + 122082543 C a score=5143735.000000 s hg38.chr17_JH159146v1_alt 28838 1400 + 278131 TAAATGCCACT-TTCCCTGTGAAAT-CTTCCAGATTTACTCTTTCCTCTGCATTCATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTAATTATAATCAGTTGTTCGGCCTGTTTCCCTGCCAGTTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTATAGTTCCTAACAGAGGACCTTGGTAAACACATACTAGATTGAGAAAG-AGAAGTTAGATATGCTTTACCATGCTGAGATGGGACTGGAGTTCTATCTCAAGGCTCTGGGAGGTGCGTCTCAGCTCCGTTAGTTGAA-CCTCAGTTCCTTTTAATTCTTC-AGTATTCACTGTGACCTGTTGCTGCAGAACTGCAGTCTAC--AGTGCCAAGAGTG-AAAAAAA-------------AATAGTTGAGGGGTGGAAATaagaaaga----aaagacagaaagagaaaggaagaatgaac--aaatgaaaa-------------a-gaaaATGAG--------TTATCTGTTTCT-----GGAGGAAAGCATCTACACG-TTTGCTCACCCTTTAGAA-----------TTGTGTGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGACGCC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTGTAGGCCA--TCGACTT-CCTATGAAAGTGAAATTTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGCTGGGCAGAAAAGACAT---AAGGAGTC-TCATGACCTC--TTTCATTGGGAA-TAAGTAAAAAA--GATATAAAATAAT-AACTTGT-GTTGGGCTT-ATTGTGGT--CCAGGTGCTGCTCTAAGTCATTTAACTT--ACAACAACATTATGAAAAGAAGGTA-G-------GGCTTG--------------------------------------------TATCATTATTGTCATCGTCATCATCTCTGTCACTA-------------------------------------------------------------------------------------TCACC--ACCAACTCTTCCCCC--TTCTCC-TGTTTCTCC-CGCTCCTCCT--ATTATTA-GTATTATATAGAACCA--TTCCATTGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCCTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAGATCAGC-TTCCACTGTTAGACGTATTCCTCT-CTCAGTCTCATACCTGTGAATTAATTAGTGTACAGAGATAACTG-GTCCTTCTGAAGCCATTATAAG-GAGAGAATC-TAATATAATGGGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAATACTTTATAATGTCTGCCTTTACACAATCATGAAATTTACATAAGAACCTAGGAGTCAGAAAATGTGCTCAATAATATAATCTCTA s panTro4.chr17 66145717 1397 - 82630442 TAAATGCCACT-TTCCCTGTGAAAT-CTTCCAGATTTACTCTTTCGTCTGCATTCATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTAATTATAATCAGTTGTTCGGCCTGTTTCCCTGCCAGTTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTATAGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGTTCTATCTCAAGGCTCTGGGAAGTGCGTCTCAGCTCCGTTAGTTGAA-CCTCAGTTCCTTTTAATTCTTC-AGTATTCACTGTGACCTGTTGCTGCAGAACTGCAGTCTAC--AGTGCCAAGAGTG-AAAAAAA-------------AATAGTTGAGGGGTGGAAATAAGATAGA----AAAGACAGAAAGAGAAAGGAAGAATGAAC--AAATGAAAA-------------A-GAAAATGAG--------TTATCTGTTTCT-----GGAGGAAAGCATCTACACG-TTTGCTCACCCTTTAGAA-----------TTGTGTGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCGCC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTGTAGGCCA--TCGACTT-CCTATGAAAGTGAAAT---TGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGCTGGGCAGAAAAGACAT---AAGGAGTC-TCATGACCTC--TTTCACTGGGAA-TAAGTAAAAAA--GATATAAaataat-aacttgt-gttgggctt-attgtggt--ccaggtactgctctaagtcatttaactt--acaacaacattatgaaaagaaggta-g-------ggcttg--------------------------------------------tatcattattgtcATCGTCATCATCTCTGTCACTA-------------------------------------------------------------------------------------CCACC--ACCAACTCTTCCCCC--TTCTCC-TGTTTCTCC-CGCTCCTCCT--ATTATTA-GTATTATATAGAACCA--TTCCATTGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCCTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAGATCAGC-TTCCACTGTTAGACGTATTCCTCT-CTCAGTCTCATACCTGTGAATTAATTAGTGTACAGAGATAACTG-GTCCTTCTGAAGCCATTATAAG-GAGAGAATC-TAATATAATGGGATAGGTTTTAAAATGTGGCTTATGAGGAGATCAATTTCAATACCTTATAATGTCTGCCTTTACACATTCATGAAATTTACATAAGAACCTAGGAGTCAGAAAATGTGCTCAATAATATAATCTCTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24671876 1445 - 73212453 TAAATGCCACTCTTCCCTGTGAAATCCTTCCAGATTTACTCTTTCCTCTGCATTCATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTAATTATAATCAGTTGTTCGGCCTGTTTCCCTGCCAGCTCTGCA-AGAGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTAGAGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAGAAGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGTTCTATCTCGAGGCTCTGGTAAGTGCGTCTCAGCTCTGTTAGTTGAACCCTCAGTTCCTTTTAATTCTTCAAGTGTTCACTGTGACTTGTTGCTGCAGAACTGCAGTCTAC--AGTGCCaagagtgaaaaaaaa-------------aatagttgaggggtggaaataagaaaga----aaagacagaaagagaaaggaagaatgaac--aaatgaaaa-------------ataaaaaTGAG--------TTATCTCTTTCT-----GGAGGGAAGCTTCTACACATTTTGCTCACCCTTCAGAA-----------TTGTGTGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCTGGGGCCATGACTTCATACCTTCTGCCTCATTTTCATTCATGATGGCGCCAAAGGTTCAGGCCTGGTAGCAGCATCAACCTCCACATTNGACAGTGTTGCCCAGATGCTTGTGTAGGCCCATTCGACTTCCCTATGAAAGTGAAAATTCTGACTGGATTTTTAGTCTGAAGCACATTCTCAGAATAAGGCTGGGCAGAAAAGACATA--AAGGAGTCTTCATGACCTCTATTTCATTGGGAATTAAGTAAAAAAAGGAAATAAAATAATAAATTTGTGGTTAGGCTTAATTGTGGTACCAGGGTACTGCTCTAAGTCATTTAACCTTACCAACAACATTATGAAAAGAAGGTAGG-------GGCTTA--------------------------------------------TATCACTATTG---------TCATCTCTGTCACTAC------------------------------------------------------------------------------------CCACCCACCCAACTCCTTCCCCCATTCTCCGTGTTTCTCCTCGCTCCTCCCTATTTATTAGGTATTATATAGAACCCATTCCCACTGTTTACAATACCCACTTTCTGAATATTTTCTCACCTCCGTGATGCTCCTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTTGGAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAGATCAGCTTTCCACTGTTAGACGTATTCCCCTCCTCAGTCTCATACCTGTGAATTAATTAGTGTACAGAGATAGCTG-GTCCTTCTGAAGTCATTATAAGAGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAATACTTTATAATGTCTGCCTTTACACATTCATGAAATGTACATAAGAACCTAGGAGTCAGAAAATGTGCTCAATAATATAATCTCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47897156 1401 - 81552678 TAAATGCCACT-TTCCCTGTGAAAT-CTTCCAGATTTACTCTTTCCTCTGCATTCATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTAATTATAATCAGTTGTTCGGCCTGTTTCCCTGCCAGCTCTGCA-AGGGGAAGGGTTATTTTTTGTAGGTCTTTGCATTTCTAGAGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGCGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGTTCTATCTCGAGGCTCTGGGAGGTGCGTCTCAGCTCCGTTAGTTGAA-CCTCAGTTCCTTTTAATTCTTC-AGTATTCACTGTGACCTGTTGCTGCAGAACTGCAGTCTAC--AGTGCCAAGAGTG-AAAAAAA-------------AATAGTTGAGGGGTGGAAATAAGAAAGA----AAAGACAGAAAGAGAAAGGAAGAATGAAC--AAATGAAAG-------------A-GAAAATGAG--------TTATCTCTTTCT-----GGAGGAAAGCTTCTACACA-TTTGCTCACCCTTTAGAA-----------TTGTGTGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCAGGCCTGG-AGCAGCGTCAACCTCCACATT-GACAGTGTTGCCCAGCTGCTTGTGTAGGCCA--TCGACTT-CCTATGAAAGTGAAAATTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGCTGGGCAGAAAAGACAT---AAGGAGTC-TCATGACCTC--TTTCACTGGGAA-TAAGTAAAAAA--GAAATAAAATAAT-AACTTGT-GTTGGGCTT-ATTGTGGT--CCAGGTACTGCTCTAAGTCATTTAACCT--ACAACAACATTATGAAAAGAAGGTA-G-------GGCTTA--------------------------------------------TATCACTATTGTCATCGTCATCATCTCTGTCACTA-------------------------------------------------------------------------------------CCACC--ACCAActcgtccccc--ttctcc-tgtttctcc-tgctcctcct--ATTATTA-GTATTATATAGAACCA--TTCCATTGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTTTACTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAGATCAGC-TTCCACTGTTAGACGTATTCCCCT-CTCAGTCTCATACCTGTGGATTAATTAGTGTACAGAGATAACTG-GTCCTTCTGAAGCCATTATAAGGGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATAAGGAGATCAATTTCAATACTTTATAATGTCTGCCTTTATACATTCATGAAATGTACATAAGAACCTAGGAGTCAGAAAATTTGTTCAATAATATAGTCTCTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53010463 1404 + 80904711 taaatgccact-ttcccagtgaaat-cttccAGATTTACTCTTTCCTCTGCATACATCCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTGATTATAATCAGTTGTTCGGCCTCTTTCCCTGCCAGCTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTA-AGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGGTCTATCTCGAGGCTCTGGGAGGTGCGTCTCAGCTCTGTTAGTTCAA-CCTCAGTTCCTTTTAATTCTTC-AGTGTTCACTGTGACCTGTTGCTGCAGAATTTCAGTCTACAAAGTGCC--GAGTG-aaaaaaa---------aacaaacagttgagggatggaaataagaaaga----aaagacagaaagagaaagaaagaatgaac--aaatgaaga-------------a-gaaaCTGAG--------TTATCTCTTTCT-----GGAGGAAAGCTTCTACACA-TTTGCTCACACTTTACAA-----------TTGTGCGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGTCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTATAGACCA--TCGACTT-CCTATGAAAGTGAAAATTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGTTGGGCAGAAAAGACAT---AAGAAGTC-TCATGACCTC--TTTCATTGGCAA-TGAGTAAAAAA--GAAATAAaataat-aacttgt-gttgggctt-attgtggt--ccaggtactgctctaagtcatttaacct--acaacaacattatgaaaagaaggcg-g-------ggcttg--------------------------------------------tatcactattgtcatCATCATCATCTCTGTCATTA-------------------------------------------------------------------------------------CCACC--ACCAACTCTTCCCCC--TTCTCC-TGTTTCTCC-TGCTCCTCCT--ATTATTA-TTATTATATAGAACCA--TTCCATCGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTTTGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAAATCAGC-TTCCACCGTTAGGCGTATTCCCCT-CTCGGTCTCATACCTGGGAATTAATTAGTATACAGAGATAACTG-GTCCTTCTGTAGCCATTATAAGAGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAAAACTTTATAATGTCTGCCTTTATACATTCATGAAATGTACATAAGAACCTAGGAATCAGACAATTTGCTCAATAATATAATCTCTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52533014 1404 + 80997621 TAAATGCCACT-TTCCCAGTGAAAT-CTTCCAGATTTACTCTTTCCTCTGCATACATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCTTTTGATTATAATCAGTTGTTCGGCCTCTTTCCCTGCCAGCTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTA-AGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGGTCTATCTCGAGGCTCTGGGAGGTGCGTCTCAGCTCTGTTAGTTCAA-CCTCAGTTCCTTTTAATTCTTC-AGTGTTCACTGTGACCTGTTGCTGCAGAATTTCAGTCTACAAAGTGCC--GAGTG-AAAAAAA---------AACAAACAGTTGAGGGATGGAAATaagaaaga----aaagacagaaagagaaagaaagaatgaac--aaatgaaga-------------a-gaaaCTGAG--------TTATCTCTTTCT-----GGAGGAAAGCTTCTACACA-TTTGCTCACACTTTACAA-----------TTGTGCGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTATAGACCA--TCGACTT-CCTATGAAAGTGAAAATTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGTTGGGCAGAAAAGACAT---AAGAAGTC-TCATGACCTC--TTTCATTGGCAA-TGAGTAAAAAA--GAAATAAAATAAT-AACTTGT-GTTGGGCTT-ATTGTGGT--CCAGGTACTGCTCTAAGTCATTTAACCT--ACAACAACATTATGAAAAGAAGGCG-G-------GGCTTG--------------------------------------------TATCACTATTGTCATCATCATCATCTCTGTCATTA-------------------------------------------------------------------------------------CCACC--ACCAACTCTTCCCCC--TTCTCC-TGTTTCTCC-TGCTCCTCCT--ATTATTA-TTATTATATAGAACCA--TTCCATCGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTTTGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAAATCAGC-TTCCACCGTTAGGCGTATTCCCCT-CTCGGTCTCATACCTGGGAATTAATTAGTATACAGAGATAACTG-GTCCTTCTGTAGCCATTATAAGAGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAAAACTTTATAATGTCTGCCTTTATACATTCATGAAATGTACATAAGAACCTAGGAATCAGACAATTTGCTCAATAATATAATCTCTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47577986 1410 + 74645514 TAAATGCCACT-TTCCCTGTGAAAT-CTTCCAGATTTACTCTTTCCTCTGCATACATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTGATTATAATCAGTTGTTCGGCCTCTTTCCCTGCCAGCTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTA-AGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGGTCTATCTCGAGGCTCTGGGAGGTGCGTCTCAGCTCTGTTAGTTCAA-CCTCAGTTCCTTTTAATTCTTC-AGTGTTCACTGTGACCTGTTGCTGCAGAACTTCAGTCTACAAAGTGccaagagtg-aaaaaaaa-----aacaaaaaacagttgagggatggaaataagaaaga----aaagacagaaagagaaagaaagaatgaac--aaatgaaga-------------a-gaaactgag--------TTATCTCTTTCT-----GGAGGAAAGCTTCTACACA-TTTGCTCATACTTTACAA-----------TTGTGCAGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTATAGACCA--TCGACTT-CCTATGAAAGTGAAAATTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGTTGGGCAGAAAAGACAT---AAGAAGTC-TCATGACCTC--TTTCATTGGCAa-tgagtaaaaaa--gaaataaaataat-aacttgt-gTTGGGCTT-ATTGTGGT--CCAGGTACTGCTCTAAGTCATTTAACCT--ACAACAACATTATGAAAAGAAGGCG-G-------GGCTTG--------------------------------------------TATCactattgtcatcatcatcatctctgtCATTA-------------------------------------------------------------------------------------CCACC--ACCAACTCTTCCCCC--TTCTCC-TGTTTCTCC-TGCTcctcct--attatta-ttattatatagaaCCA--TTCTATCATTTCCAATACc--acttctgaatattttcttaccTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAACTT-GAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAAATCAGC-TTCCACTGTTAGGCGTATTCCCCT-CTCAGTCTCATACCTGGGAATTAATTAGTATACAGAGATAACTG-GTCCTTCTGTAGCCATTATAAGAGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAATACTTTATAATGTCTGCCTTTATACATTCATGAAATGTACATAAGAACCTAGGAATCAGACAATTTGCTCAATAATATAATCTCTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9844365 1407 - 75148670 TAAATGCCACT-TTCCCTGTGAAAT-CTTCCAGATTTACTCTTTCCTCTGCATTCATGCAGTACATTGCCCTT-TCCTCGATTTCTCTCTGTCCTTTGATTATAATCAGTTGTTCGGCCTCTTTCCCTGCCAGCTCTGCA-AGGGGAAGGGTTATTTCTTGTAGGTCTTTGCATTTCTA-AGTTCCTAACAGAGGACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATGTGCTTTACCATGCTGAGATGGGACTGGAGGTCTATCTCGAGGCTCTGGGAGGTGCGTCTCAGCTCTGTTAGTTCAA-CCTCAGTTCCTTTTAATTCTTC-AGTGTTCACTATGACCTGTTGCTGCAGAACTTCAGTCTACAAAGTGCCGAGAGTg-aaaaaaaa--------aacaaacagttgaggaatggaaataagaaaga----aaagacagaaagagaaagaaagaatgaac--aaatgaaGA-------------G-GAAACTGAG--------TTATCTCTTTCT-----GGAGGAAAGCTTCTACACA-TTTGCTCACACTTTACAA-----------TTGTGCGGTTACCTGTCTCTCAAACTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGACTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCAGGCCTGG-AGCAGCATCAACCTCCACATT-GACAGTGTTGCCCAGATGCTTGTATAGACCA--TCGACTT-CCTATGAAAGTGAAAATTCTGATTGA--TTTTAGTCTGAAGCACATTCTCAG-ATAAGGTTGGGCAGAAAAGACAT---AAGAAGTC-TCATGACCTC--TTTCATTGGCAA-CGAGTAAAAAA--GAAATAAAATAAT-AACTTGT-GTTGGGCTT-ATTGTGGT--CCAGGTACTGCTCTAAGTCATTTAACCT--ACAACAACATTATGAAAAGAAGGCG-G-------GGCTTG--------------------------------------------TATCACTATTGTCATCATCATCATCTCTGTCATTA-------------------------------------------------------------------------------------CCACC--ACCAActcttccccc--ttctcc-tgtttctcc-tgctcctcct--ATTATTA-TTATTATATAGAACCA--TTCCATCGTTTCCAATACC--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTTTATTCAGTTCTTCAATTT-GAATCTCCAAATCTGTTTTATGTAGGGTTAGGTCATCAAAGACCTTATTCAGGCCTTGGAAATCAGC-TTCCACTGTTAGGCGTATTCCTCT-CTCGGTCTCATACCTGGGAATTAATTAGTATACAGAGATAACTG-GTCCTTCTGCGGCCATTATAAGAGAGAGAATC-TAATATAATGAGATAGGTTTTTAAATGTGGCTTATGAGGAGATCAATTTCAATACTTTATAATGTCTGCCTTTATACATTCATGAAATGTACATAAGAACCTAGGAATCAGACAATTTGCTCAATAATATAATCTCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112689732 1371 + 159171411 TAAATGCCACT-TTCCCTGTGGAAT-CTTCCAGATTGACTCTTTCTTCTGCATTCACACAGTACATTGCCCTT-TCCTTGATTTCTCTCTGTCCTTTAATTATAATCAGTTATTCGGCCTGTTTCCCTGCTGGCTCTGCA-AGGGGACGGGTTATTTCTAATAGA--TTTGCATTTCTAGAGTTCCTAACAGAGAACCTTGGTAAACACATACTGGATTGAGAAAG-AGAAGTTAGATG---TTTACCGTGCTGAGATAGGACTGGAGTTCTATCTCTAGGCTCTGGAAGGTGCGTCTCAGCTCCGTTAGTTGAA-CCTCAGCTCTTTTGAATTCTTC-AGTGTTCACTGTGACCTGTTGCTGCAGAACTATAGTCTAA--AGTGCCaagagtg-aaaaaaa-------------aaaa--tcaaggatgaaaataagaaagaaaggaaagacagaaagagaaagtaagaatgaac--aaatgaaaa-------------a-taaaatgaG--------TTCTCTCTTTTG-----GGAGGAAAGCTTCTACACA-TTTACTCACACTTTACTGTTAGCTGTCTCTTATACTGTTACCTGTCTCTCAAAGTGTTCTTTGGCCTCTTGAAGGTTCTTCT-GGGCCATGTCTTCATA-CTTCTGCCTCA-TTTCATTCATGATGGCACC-AAGGTTCCGACCTGG-AGCAGCATCAACCTCCACGTT-GACAGTGTTGCCCAGATGCCTGTGTAGGCTA--TCGACTT-CCTATGAAAGTGAAAATCCTGGTTGA--TTTTAGTCTGAAGCACGTTTTCGG-ATAAGTCTGGGCAGAAAAGACGT---AGGAAGTC-TCATGTCCTC--TTTCATTGTGAA-TGAGTGAAAAA--GAAAGAAAATGAT-AA----------------ATTTTGGT--CCAGGTACTGCTCTAAGTCATTTAACTG--ATAACAACATTATGAAAAGAAGTTA-G-------GGCTTA--------------------------------------------TGTCACTGTTGTCATTGCCGTGATCGCTGTCACCA-------------------------------------------------------------------------------------CCACC--ACCAA------------CTCTCC-------------CTCCTCCT--GTTATTG-TTACTATATAGAATCA--TTCCATCATTTCCGATACG--ACTTCTGAATATTTTCTCACCTCC-TGATGCTCTTTTTTGAGGAGAGCTAGGTCTCTATTCAGTTCTTCAATTT-GAACCTCCAAATCTGTTTTTTGTAGGGTTAGATCATCAATGACCTTACTCAGGCCTTGGAGATCGAC-TTCCACTGTTAGGCGTATGCCCCT-CTCAGTCTCAAACCTGTGAATTAATTAGTATACAGAGATAACTC-GTCCTTCTAAAGCCATTATAGGAGACAGAATC-TAATATAATGAGATAGATTTTT-TATGTGGCTTATGAGGAGATTAATTTCAATATTTTATAACATCCCTCTTTATACATTCATGAATTGTACATGAGAACCTAGGAGTCAGACAATTTGCTCAAGAATATAA--TCTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99431633 1516 + 122082543 CAAATGTGATC-TCCTCTGTGGAAT-CTTCAAGAT---CTTGTTCCTCTGC-CCTGTATAGCTCATTGCCCTT-GCCACAGCTTCTTTCTGTGCTGTAGTTATTGTTAGCCGTTGGACCTGTTTCCCTGTTGGCTCTGCA-AGGGAAGAGGTTATTTATTAC-GGTGTCTGTGCTCGCAGAGTCCTGAACGTGGTCCCTTGCCAGA-ACAGACCTGACCAAGCAAT-GGAGGTCAGAGGTGC-TCACCATGCTGAGGTGGGACTGCAACTCTATCTCCAGGTTCTGGTAGGTGCGTCTCAGCTCCGTGACTTGAA-CCTCGAATCCTTTCAGCTCCTC-CGTGTTCACTGTGACTTGTTGCTGCAGAGTTTGACTCTAA--AATTTCAAGAAGT-AAGAAAAATGAGCAAAGAGAGACACAAGAGAGa-ggaagaaaggaagg----aaggaaagcgaaggagaggaaagaaggacagaaaggaagACAGACAGAAGTAGG-GAAAACGAGAGAAAACATCATCTCTCTCC-----GT-GGAACTATGTTCCCCA-TCCACCCCCAGACTAGAA-------------------TTACCTGTCTCTCGAACTGTTCTTTGGCCTCTTGCAGGTTCTTCT-GGGCCAGGACTTCATA-TCTCTGTCTCA-TCTCATTCATGATCTCTCC-CAGGTTCAGGCCTGG-AGCAGCATCCACCTCCACGTT-GACATTGTTGCCCAGCTGCCGGCGAAGAACC--TCAACTT-CCTATAAGAGTGAGG-TTCTCACTGA--GGTTAGTCTGACATATATTCTCAG-ATCAGGCTGGCTAGAGGAGACAT---AAGTAATC-TCATGACCTC--TTTCATTGGGGA-TGAAGAAAGAT--GAAAGGAAATCAG-AA------GGT-GGCTT-CCTGTGGT--CTGGGCATTGCTTGGAGTTATTTAACCA--AGCACAACATCACAGAAAGAAGTTA-GTCTTGTTGTCTTGATTGATACTGCCTTTATCACTGTCGCTATcactactacctcctctaccattactaccaccatcaccatcactattactaccaccatcatcaccaccaccatcatcatgaccaccaccaccaccatcatcaccatcatcaccaccacgataacaccaccataacaccacc--accaccaccTCCTCT--TCCTCT-TCTTTCTGT-TTGTCCGCCT--CTCACTT-ATATTAT-TAGAGCTG--TCTGA-----TCCTATACA--ATCCCTGCATA-CTTCTTACCTCT-TGATGTTCCTTTTTGAGGAGGGCCAGGTCCTTGTTCAGTTCTTCAATCT-GAATTTCCAAGTCTGTCTTTTGAAGAGTCAGATTATCATAAACTTTGCTCAGGCCTTGGAGATCAGC-TTCCACAGCTATACGCATTCCCCT-CTCAGTCTCAAACCTGGGAATGAATCAAGATGCAGACATACTCA-GGTCTTCTAAAGTCAGCGTAGAAGAGATAATT-TAACATAATGAGAGAGAT--------------------------AATTCATGTGCTCCATAACAAATTCCTTCACATATTTGTGAAAAATGGATAAGACTCTGGGAGCCAGATCATTTGCTCTGTAATATAACTTGTA i mm10.chr11 C 0 I 2256 s canFam3.chr9 39260096 1282 - 61074082 GAAATGCCACT-TTCTGTGTGAAGT-CTTCTAGATCTACTTGTTCCTGTGCATCCTTGCAGTGCATTACTCTTGTCCTGGATTTCTTTCTGTGTTTTAATTATAATCAGTGGTTTGGCCTCTTTCCCTGCCAGCTCTGCAGAGACGAGATGTTATTTCCTAGAGGTTTCTGCATCTCTAGAGTTCCTCACACAGGCACTTAGTAAACACACACTGCATTCAGAGAG-GGAAATTAAATGTGCTTTACCAGACTGAGGAGGGACTGCAGTTCTATCTCCAGGTTCTGGTAGGTGCGTCTCAGCTCCTTTACTTGAA-ACTCAGCTTCTTTTAACTCTTC-ATTGCTCCCTATGACTTGTTGCTGCAGAGATTCAGTCTAA--AGT--------TA-AAAAAAA-----------------------------AAATGAGTAAGG----AGAG---------------------------AAAGGAA---------------A-GAAAAAGAG--------TTATCTTTTTTTTAAAGGAAGGACAACTTCTACACA-TTGGCTTACCCTCT-GAG-----------TTATGCTATTACCTGTTTCTCAAACTGTTCTTTGGCCTTCTGAAGGTTCTCTT-GGGCAATTACTTCATA-CTTCTGCCTCA-TTTCATTCATGGTGGTACC-AAGGTTCAGGGCTGG-AGCAGCATCCAATTCTACACT-GACAGTATTGCCCAGGTGTCTGTGTAGGCTG--TCCACTT-CCTACAAGAGTGAAAATCCTGATTAC------AGTCTACAGCACGTTCTCAC-TTGAGGCTGAGCAGAAAAGATATAATAATAACTC-TTACGGCTTC--TTTCATAGGGGA-GGAATAAAAAA--GA---AAGACAAT-AACTTAG-GTGGGGCTT-ATTCCAGT--CCAGGTACTTCTCT--GTCATTGAACCC--------------TGA-----------C-------CATTCA--------------------------------------------CATCATTATTAT---------------TGTCATTT-------------------------------------------------------------------------------------TTTTT--ACCA-------------TCCTCC-----------CCCTCCCCTT--ATTATCA-TTAT----TAGAGCCA--TTCTGTCATTCCCAGCACC--ACATCTGAATATTTTCTCACCTCT-TGATGTTCTTTTTTGAGGATATCCAGGTCTTTACTCAGTTCTTTAACTT-GAATCTCCAAGTCTTTTCTAGTTAGGGCTAGATCATCCAAGACCTTATTCAGGCCTTGGAGATCACT-CTCCACTGTTAGGCGGATCCCCCT-TTCGGTCTCATACCTGTGAATTAATTGGTATGCAGAGATAATGGAGTCCTTCTGAAGCCATTATAGAAGAGATAGTCTTAATATAATGAGACA--TTTTT--ATGTAGCACATGAG--GATTAATTTCAATACATTGT---GTCCCTCTTTATACATTCCAAAAATGTTCATGAGAACCCAGGAATCAGATAATTTGCTCCATAATGTAATCTTTG i canFam3.chr9 C 0 C 0 a score=842163.000000 s hg38.chr17_JH159146v1_alt 30238 253 + 278131 TAATTTGGGGTGACTGGT--AAAAAGGCAATCTGAAATAA-TTTTGAACACTTCTAAATTCTAGAATTTATCTTATAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTTATTATTGATATTAAATAATGGT----------------TAGTTTTACTTAATGAATGTACATGATCGATTTATTTTTATTACTTTGTGAACAGAGACATCCAAAGTGAATTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C s panTro4.chr17 66147114 253 - 82630442 TAATTTGGGGTGACTGGT--AAAAAGGCAATCTGAAATAA-TTTTGAACACTTCTAAATTCTAGAATTTATCTTATAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTTATTATTGATATTAAATAATGGT----------------TAGTTTTACTTAATGAATGTACATGATCGATTTATTTTTATTACTTTGTGAACAGAGACATCCAAAGTGAATTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24673321 253 - 73212453 TAATTTGGAGTGACTGGT--AAAAAGGCAATCTGAAATAA-TTTTGAACACTGCTAAATTCTAGAATTTATCTTACAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTTATTATTGATATTAAATAGTGGT----------------TAGTTTTACTTAATGAATGTACATGATCGATTTATTTTTATTACCTTGTGAACAGAGGCATCCAAAGTGAATTATCTCAAACTGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47898557 270 - 81552678 TAATTTGGAGTGACTGGT--AAAAAGGAGGAGGGAAATAA-TTTTGAACGCTTCTAAATTCTAGAATTTATCTTATAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGttcttattattgatattaaataattattattgatattaAATAATAGTTTTACTTAGTGAATGTACATGATCGATTTATTTTTATAACTTTGTGAACAGAGGCATCCAAAGTGAATTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTACAATA--------------------------------C i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53011867 245 + 80904711 TAATTTGGAGTGACTGG---AAAAAGGCAATCTGAAATAA-TTTTGAGCACTTCTAAATTCTAGAATTTATCTTACAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTCATTATTGATATTAAA-----------------------TACTTTTACTTAATGAATGTACATGATCAATTTATTTTTATAACTTTGTGAACTGAGGCATCCAAAGTGACTTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52534418 245 + 80997621 TAATTTGGAGTGACTGG---AAAAAGGCAATCTGAAATAA-TTTTGAGCACTTCTAAATTCTAGAATTTATCTTACAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTCATTATTGATATTAAA-----------------------TACTTTTACTTAATGAATGTACATGATCAATTTATTTTTATAACTTTGTGAACTGAGGCATCCAAAGTGACTTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47579396 245 + 74645514 TAATTTGGAGTGACTGG---AAAAAGGCAATCTGAAATAA-TTTTGAGCACTTCTAAATTCTAGAATTTATCTTACAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTCATTATTGATATTAAA-----------------------TACTTTTACTTAATGAATGTACatgatcaatttatttttataactttgtgAACTAAGGCATCCAAAGTGACTTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-Ata--------------------------------c i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9845772 245 - 75148670 TAATTTGGAGTGACTGG---AAAAAGGCAATCTGAAATAA-TTTTGAGCACTTCTAAATTCTAGAATTTATCTTACAAGAAATTAAATTGTGTTAATTATTGTGTTGGCAAAGGGTTCTCATTATTGATATTAAA-----------------------TACTTTTACTTAATGAATGTACATGATCAATTTATTTTTATAACTTTGTGAACTGAGGCATCCAAAGTGACTTATCTCAAACAGCTCTACATCCTCCTCTACAATCTTAC-ATA--------------------------------C i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112691103 284 + 159171411 TGATTTGGAGTGACTGGT--AAAAAGGCAATCTGAAATAG-TTTTGAACATTTCtaaattttagaatatattttataagaaattaaattGTGTTAATTATTGTGTTGGCAAAGGGTTCTTAATATTGATATTAAATAATGGT----------------TAGTTTTACTTAAT-AATGTACATGATCAATTTATTTTTATTACTTTGTAAACAGAGGCATTCAAAGTGAATTATCTCAAACAGTTCTACATCCTCCTCTAGAATCTTAC-ATGAGCACACATtctctctctctctctctctctctc i calJac3.chr5 C 0 C 0 s canFam3.chr9 39261378 253 - 61074082 TAATTTGGAGTGATTGGTAAAAAAAAACAATCTGAAATAACTCCTAAAAGTTTTTAAATTCTAGAATATACtttaaaagaaataaaaatattttaattaatGTGTCAGCAAAAGATTCTCATTATTGATATTAAA---TGGT----------------TAGATTTATGTAATGAATACACTTGATCAATTTATTTTTATTACTTTGTAAGCAGATGTATCCAAAGGGAATTGTCTTAAAGAATTCATGATTCTTCCTTACAATCTTAT-ATA--------------------------------C i canFam3.chr9 C 0 I 7 e mm10.chr11 99433149 2256 + 122082543 I a score=927334.000000 s hg38.chr17_JH159146v1_alt 30491 336 + 278131 ACAC--------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tAtttgagacagggtcccactctgtcactcaggctggagtacaatggtgtgatcatggctcactgcagcctcaacctttggggctcaagcaatcctctcacctcagcctcccaagtagctgggacagcagatgtatgccaccatgcccagct-aatttttttt-gtatttttgtatagagatgtggttttgccacgttgcccaagctgttctcaaactccaggactcaagtgagcctcctgcctcagcctctcaaagtgctgggattacaggcgttagccatcatgcATGCCCTGCCCAG s panTro4.chr17 66147367 340 - 82630442 ACACtgtgtg----------tg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tAtttgagacagggtcccactctgtcactcaggctggagtacaatggtgtgatcatggctcactgcagcctcaacctttggggctcaagcaatcctctcacctcagcctcccaagtagctgggacagcagacgtatgccaccatgcccagct-aatttttttt-gtatttttgtatagagatgtggttttgccatgttgcccaagctgttctcaaactccaggactcaagtgagcctcctgtctcagcctctcaaagtgctgggattacaggcgttagccat----catgccctgccCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24673574 357 - 73212453 ACACTCTAtg----------tg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTATATATATATAtttgagacagggtcccactctgtcacccaggctggagtacaatggtgtgatcatggctcactgcagcctcaacctccagggctcaagcaatcctctcacctcagcctcccaagtagctgggaccgcaggcgtatgccaccatgcccagctaaatttttttt-gtatttttgtgtggagacatggtttcgccatgttgcccaagctgttctcaaactccaggactcaagcgagccgcctgcctcagcctctcaaagtgctgggattacaggcgttagccgc----catgccctgccCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47898827 335 - 81552678 ACACTCTCTC----------TA--TGCGCgtgtgtgtgtgtgtgtgtgtgtgtgtATC----------TATATATAtttgagacggggtcccactctgtcacccaggctggagtacaatggtgtgatcatggctcactgcagcctcaacctttggggctcaagcaatcctttcacctcagcctcccaagtaggtgggacagcaggcgtatgccaccatgcccagct-aatttttt------------tgtagagacgtggttttgccatgttgcccaagctgttctcaaactccaggactcaagtgagccgcctgcctcagcctctcaaagtgctgggattacaggcgttagccac----catgccctgccCAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53012112 348 + 80904711 GCTCTCTGTCTCTCTCACTATA--TATATAtgtgtgtgtgtgtgtgtgtgtgtgtgtA----------------TAtttgagacagggtaccactctgtcacccaagctggaatacagtgatgcgatcatggctccctgcagcctcaacctcctgggctcaagcaatcctctcacctcagcctcccaagtagctgggaccacaggtgtatgccaccacgcccagct--acttttttt-gtatttttgtgtagagacgtggtttcgccatgttgcccaagctgttctcaaactccaggactcaagcaaaccgcctgcctcagcctctcaaagtgct-ggattacaggcattagccac----cacgccctgccCAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52534663 348 + 80997621 GCTCTCTGTCTCTCTCACTATA--TATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtA----------------TAtttgagacagggtaccactctgtcacccaagctggaatacagtgatgcgatcatggctccctgcagcctcaacctcctgggctcaagcaatcctctcacctcagcctcccaagtagctgggaccacaggtgtatgccaccacgcccagct--acttttttt-gtatttttgtgtagagacgtggtttcgccatgttgcccaagctgttctcaaactccaggactcaagcaaaccgcctgcctcagcctctcaaagtgct-ggattacaggcattagccac----cacgccctgccCAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47579641 350 + 74645514 actctctgtctctctcactatatgtatatatgtgtgtgtgtgtgtgtgtgtgtgtgtg----------------tatttgagacagggtaccactctgtcacccaggctggaatacagtgatgcgatcatggctccctgcagcctcaacctcctgggctcaagcaatcctctcaccttagcctcccaagtagctgggaccacaggtgtatgccaccacgcccagct--acttttttt-gtatttttgtgtagagacgtggtttcgccatgttgcccaagctgttctcaaactccaggactcaagcaaaccgcctgcctcagcctctcaaagtgct-ggattacaggcattagccac----cacgccctgcccaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9846017 343 - 75148670 GCTCTCTGTCTCTCTCACTATA--TATA----tgtgtgtgtgtgtgtgtgtgtgtgtg----------------tAtttgagacagagtaccactctgtcacccaggctggaatacagtggtgcgatcttggctccctgcagcctcaacctcctgggctcaagcaatcctctcacctcagcctcccaagtagctgggaccacaggtgtatgcaaccacgcccagct--acttttttt-gtatttttgtgtagagacatggttcc-ccatgttgcccaagctgttctcaaactccaggactcaagcaaaccgcctgcctcagcctctcaaagtgct-ggattacaggcattagccac----cacgccctgccCAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112691387 366 + 159171411 tctctctctctctctctctctc--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtAGATATATGTATAtttgagacagggtcccactctgtcacccaggctggagtacaatggcacaatcctggctcactgcagcctcaacctcccaggctaaagcagtcctctcacttcagcctcccaagtacctgggatcacaggcaaatgacaccatgccaagct--attttttttggtatttttgtgtagagacggggtttcatcacattgcccaaacggttctcaaactccaggactcaagagagtcacccgcctcagcctctcaaagtgctgggattataggcattagccac----catgccctgccCAA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39261631 7 - 61074082 I e mm10.chr11 99433149 2256 + 122082543 I a score=1038687.000000 s hg38.chr17_JH159146v1_alt 30827 352 + 278131 TTTCCTAAAATATC-CAACTTTAAAAAATGACACTGCAATGTGACACTCAG-----TGCTAGGTAAAATTGGAAGTAATGCACCTTTACTGCTTTCATCTTTGGATTTGATTTCCTATTTCCTTCTTGTTAATCCCTTGGAGCATTAAAAGGCTACCCTTCT-AACCACAAAGGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGAGGCCTTAGTGTGGAAGCTGTTTGCAAGGAACAGGTCTGGTCACATGTGGTGTG--ATGACTACAAAGAAAGTGAACACAATTTTTACTTTCTTTTTCttttctttctttcttcc--------tttttttttttgagacaaggtctcagtctgtt s panTro4.chr17 66147707 356 - 82630442 TTTCCTAAAATATC-CAACTTTAAAAAATGACACTGCAATGTGACACTCAG-----TGCTAGGTAAAATTGGAAGTAATGCACCTTTACTGCTTTCATCTTTGGATTTGATTTCCTATTTCCTTATTGTTAATCCCTTGGAGCATTAAAAGGCTACCCTTCT-AACCACAAAGGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGAGGCCTTAGTGTGGAAGCTGTTTGCAAGGAACCGGTCTGGTCACATGTGGTGTG--ATGACTACAAAGAAAGTGAACACAATTTTTACTTTCTTTTTCTTttctttctttcttcc----tttttttttttttttgagacaaggtctcagtctgtt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24673931 348 - 73212453 TTTCCTAAAATATC-CAACTTTAAAAAATGACACTGCAATGTGACACTCAG-----TGCTAGGTAAAATTGGAAGTAATGCACTTTTGCTGCTTTCTTCTTTGGATTTGATTTCCTGTTTCCTTCTTGTTAATCCCTTGGAGCATTAAAAGGCTACCCTTCT-AACCACAAAGGGCTTTTTGGTGTTAATGCGTTGTACAAATTCAGGATGAAGAGGACTTAGTGTGGAAGATGTTTGCAAGGAACAGTTCTGGTCACATGTGGTGTG--ACGACTACAAAGAAAGTGAACACAATTTTTACTTTCtttttcttttctttcttac------------tttttttttttgagacaaggtctcagtctgtt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47899162 359 - 81552678 TTTCCTAAAATATC-CAACTTTAAAAAATGACACTGCAATGTGACACTCAG-----TGCTAGGTAAAATTGGAGGTAATGCAC-TTTACTGCTTTCTTCTTTGGATTTGATTTCCTATTTCCTTCTTGTTAATCCCTTGGAGCATTAAAAGGCTACCCTTCT-AACCACAAAGGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGAGGCCTTAGTGTGGAAGCTGTTTGCAAGGAACGGGTCTGGTCACATGTGGTGTG--ATGACTACGAAGAAAGTGAACACAATTTTTACTTTCTTTTTCTTTTCTttctttcttactttttttttttttttttttgagacaaggtctcagcctgtt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53012460 323 + 80904711 TTTCCTAAAATATC-CAGCTTTAAAAAGTGACAATGCAATGGGACACTCAG-----TGCTAGGTAAAATTGTAACTAATGCACCTTTACTGCTTTAATCTTTGGATTTGATTTCCTATTTCCTTCTAGTTAATCTCTTGGAGCATTAAAAGGCTACTCTTCT-AACCACAAAAGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGATGCCCTAGTGTGGAAGCTGTTTGTAAGGAACAGCTCTGGTCACATGTGGTGTG--ATGACTACAGAGAAAGTAAACACAAttttt-------------------------------------tctttttttttgagacaaggtctcactctgtc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52535011 323 + 80997621 TTTCCTAAAATATC-CAGCTTTAAAAAGTGACAATGCAATGGGACACTCAG-----TGCTAGGTAAAATTGTAACTAATGCACCTTTACTGCTTTAATCTTTGGATTTGATTTCCTGTTTCCTTCTAGTTAATCTCTTGGAGCATTAAAAGGCTACTCTTCT-AACCACAAAAGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGATGCCCTAGTGTGGAAGCTGTTTGTAAGGAACAGCTCTGGTCACATGTGGTGTG--ATGACTACAGAGAAAGTAAACACAAttttt-------------------------------------tctttttttttgagacaaggtctcactctgtc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47579991 323 + 74645514 TTTCCTAAAATATC-CAGCTTTAAAAAGTGACAATGCAATGGGACACTCAG-----TGCTAGGTAAAATTGTAACTAATGCACCTTTACTGCTTTAATCTTTGGATTTGATTTCCTATTTCCTTCTAGTTAATCTCTTGGAGCATTAAAAGGCTACTCTTCT-AACCACAAAAGGCTTTTTGGTGTTAATGCATTGTACAAATTCAGGATGAAGATGCTCTAGTGTGGAAGCTGTTTGTAAGGAAGAGCTCTGGTCACATGTGGTGTG--ATGACTGCAGAGAAAGTAaacacaattttt-------------------------------------tctttttttttgagacaaggtctcactttgtc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9846360 323 - 75148670 TTTCCTAAAATATC-CAGCTTTAAAAAGTGACAATGCAATGGGACACTCAG-----TGCTAGGTAAAATTGTAACTAATGCACCTTTACTGCTTTAATCTTTGGATTTGATTTCCTATTTCCTTCTAGTTAATCTCTTGGAGCATTAAAAGGCTCCTCTTCT-AACCACAAAAGGCTTTTTGGTGTTCATGCATTGTACAAATTCAGGATGAAGATGCCCTAGTGTGGAAGCTGTTTGTAAGGAACAGCTCTGGTCACATGTGGTGTG--ATGACTACAGAGAAAGTAAACACAAttttt-------------------------------------tctttctttttgagacaaggtctcactctgtc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112691753 320 + 159171411 TTTCCTAAAATTTC-CAACTTTAAAAAATGACAATGCAATGGGACACTCAG-----TGCTAGGTAAAATGGGAACTAATGTACCTTTACTGC-TTCATCTTTGGATTTGATTTCCTATTTCCTCCTTGTTAATCCCTTGGAGCATTAAAAGGCTAACCTTCT-AACCACAGAGGGCTTTTTGG-GTTAACGCATTGTACAAATTCAGGATGAAGAGACCCTAGAGTGGAAGCTGTTTTCAAGGAACAGCTCTGGTCACACGTGGTATG--ATGACTACAATGAAAGTGAAC-tttttttt-------------------------------------ttttcttttttgagacaaggtctcactctgtt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39261638 305 - 61074082 TTTATTAAACTAGCAAAACTTTACAAAATGATAACACAATGGGATATTCAGGTGTTGACTTAGTAAAATTGGAATTAATGAATATTTACTGCTTTAATCTTCAGATCTGCCTTCCCATTTCTTTTTATCTGATCTCTTGTAGCATTCAAGTGCTACCCTTCTAAACCACAAAGAAC-TTTCAGTACCAATGCAGTGTACGTATTCAGGATGAGAAAGCCCTAGGGTAGGTGCTATTTGTGAGCAACAGCTGTGATTACACGTAGTGTGATATGGCTATA-AGAGAGTGAACACTATCTGA-------------------------------------GTTGGTT------------------------- i canFam3.chr9 I 7 C 0 e mm10.chr11 99433149 2256 + 122082543 I a score=370804.000000 s hg38.chr17_JH159146v1_alt 31179 125 + 278131 gcccaggttgcagtgcaatggcacgatctcagctcactgaaacctccgcctcccaggttcaagcgattctcctgcctcagcctccggagtagctgggattacagacatacggcatcacgcccagc s panTro4.chr17 66148063 125 - 82630442 gcccaggttggagtgcaatggcacgatctcagctcactgaaacctccgcctcccaggttcaagagattctcctgcctcagcctccggagtagctgggattacagacatacggcatcacgcccagc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24674279 125 - 73212453 gcccaggttggagtgcaatggcacgatcttggctcactgaaacctctgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattatagacatatggcatcatgcccagc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47899521 125 - 81552678 gcccaggttggagtgcactggcacgatctcagctcactgaaacctccgcctcccaggttcaagtgattcttctgcctcagcctcctgagtagctgggattacagacatatggcatcacgcccggc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53012783 125 + 80904711 acccaggctggagtgcaatgtcacgatctcggctcactgaaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccaagtagctgggattacagacatgtgccaccacacccggt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52535334 125 + 80997621 acccaggctggagtgcaatgtcacgatctcggctcactgaaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccaagtagctgggattacagacatgtgccaccacacccggt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47580314 125 + 74645514 acccaggctggagtgcaatgtcacgatctcggctcactgaaatctccgcctcccaggttcaagtgattctcctgtctcagcctcccaagtagctgggattacagacatgtgccaccacacccggt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9846683 125 - 75148670 acccaggctggagtgcaatgtcacgatctcggctcactgaaacctccgcctcccaagttcaagtgattctcctgcctcagcctcccaagtagctgggattacagacatgtgccaccacacctggt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112692073 125 + 159171411 gcccaggctggagtgcaatggtaccatctcagctcactgcaacctccacctcccaggttccagcgattctcctgcctcagcctcccgagtagctggaattacagacatgtgccaccacacccagc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39261943 0 - 61074082 C e mm10.chr11 99433149 2256 + 122082543 I a score=951695.000000 s hg38.chr17_JH159146v1_alt 31304 273 + 278131 taattattataGATTGGTCCTGGTTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAGCCAGAAATCATCAAGAGTCACCCctggaacttgggtcatacacttgcaggcacttgaatgaacgtgga-gaattacttggagaatcaccaagggtagacacaagactctctttagataacagaaaggcacttagggagaaggagaattgtaaattactttgttattactccaaagggcagaattaggTT---------------TAGATACCAGGTTACTAAAAAA s panTro4.chr17 66148188 272 - 82630442 taattattataGATTGGTCCTGGTTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAGCCAGAAATCATCAAGAGTCACCCctggaacttgggtcatacacttgcaggcacttgaatgaacatgga-gaattacttggagaatcaccaagggtagacacaagactctctttagataacagaaaggcacttagggagaaggagaa-tgtaaattactttgttattactccaaagggcagaattaggTT---------------TAGATACCAGGTTACTAAAAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24674404 273 - 73212453 taattATTACAGATTGGTCCTGGTTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAGCCAGAAATCATCAAGAGTCACCCctggaacttgggtcatacacttgcaggcacttgaatgaacatgga-gaattacctggagaatcaccaagggtagacataagactctctttagataacagaaaggcacttagggagaaggagaattgtaaattgctttgttattactccgaagggcagaattaggtt---------------tagATACCAGGTTACTAAAAAA i ponAbe2.chr17 C 0 I 13 s nomLeu3.chr19 47899646 273 - 81552678 taattattataGATTGGTCCTGGTTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAGCCAGAAATCATCAAGAGTCACCCctggaacttgggtcatacacttgcaggcacttgaaggaacatgga-gaattacttggagaatcaccaagggtagacataagactctctttagataacagaaaggcacttagggagaaggagaattgtaaattgctttgttattactccaaagggcagaattaggTT---------------TAGATACCAGGTTACTAAAAAA i nomLeu3.chr19 C 0 I 1 s rheMac3.chr16 53012908 288 + 80904711 taattattataGATTGGTCCTGATTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAaccagaaatcatcaagagtcacccctggaacttgggtcatacacttgcaggtacttgaatgaacatgga-gaattacttggagaatcaccaagggtagacttaagactctctttagataacagaaagacacttagggagaaggagaactgtaaattgctttcttattactccaaagggcagaattaggtttaatgggttaaaaggtagataccaggttactaaaaaa i rheMac3.chr16 C 0 I 4 s macFas5.chr16 52535459 288 + 80997621 taattattataGATTGGTCCTGATTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAaccagaaatcatcaagagtcacccctggaacttgggtcatacacttgcaggtacttgaatgaacatgga-gaattacttggagaatcaccaagggtagacttaagactctctttagataacagaaagacacttagggagaaggagaactgtaaattgctttcttattactccaaagggcagaattaggtttaatgggttaaaaggtagataccaggttactaaaaaa i macFas5.chr16 C 0 I 4 s papAnu2.chr16 47580439 287 + 74645514 taattatTATAGATTGGTCCTGATTCTTTGGTTGGCCAGACCATCCtgtaaaacactggcaaaccagAAATCATCAAGAGTCACCCCTGGAACTTGGGTCATACACTTGCAGGTACTTGAATGAACCTGGA-GAATTACTTGGAGAATCACCAAGGGTAGACTTAAGACTCTCTTTAGATAACAGAAAGGCACTTAGGGAGAAGGAGAATTGTAAATTGCTTTCTTATTACTCCAAAGGGCAGAATTAGGTTTAGTGGGTTAAAAGGTAGATACCaggttact-gaaaa i papAnu2.chr16 C 0 I 4 s chlSab2.chr16 9846808 288 - 75148670 taattattataGATTGGTCCTGATTCTTTGGTTGGCCAGACCATCCTGTAAAACACTGGCAAaccagaaatcatcaagagtcacccctggaacttgggtcatacacttgcaggtacttgaatgaacatgga-gaattacttggagaatcaccaagggtagacttaagactctctttagataacagaaaggcacttagggagaaggagaactgtaaattgctttcttattactccaaagggcagaattaggtttagtgggttaaaaggtagataccaggttactaaaaaa i chlSab2.chr16 C 0 I 7 s calJac3.chr5 112692198 255 + 159171411 taattATCATAGGTTGGTCCTGATTCTTTGGTTGGCCAGACCATT--------------------------------GTGTCACCCCTGGAATGTGGGTCATACACTTGCAGacacttgaatgaacacgaa-gaattacttggagaaccaccaagcatagacat-aggctctctttagacaacagaaaggcacttaggcagaaggagaattgtaaattgctttgttattactccaaagggcagaattaggtatactgggttaaaaggcagatgccaagttactaaaaaa i calJac3.chr5 C 0 I 1 s canFam3.chr9 39261943 281 - 61074082 TAATCA--------TAGTCCTAGTTCTTTGGTTAGTCAGACCCTATTATAAAACACTAGCAAACTTAGATGCATCAAAGGTCACCCCTGGAATTTGGGTCATACATTTGCAAGCACTAgaaagagcatggatgactaatttagagaatcactaaacatagacacatggctcgctttagataacagaaggacagcactgcagaaggagagttgtaaattgctttggtattactctaaatggcagaattagtttcaatgggtgaaaaggtagatgcgaggttccccgaaaa i canFam3.chr9 C 0 C 0 e mm10.chr11 99433149 2256 + 122082543 I a score=343707.000000 s hg38.chr17_JH159146v1_alt 31577 142 + 278131 ---AAATTTAGCAACCAGTAATAACCAAGGAGAATAGTAGTTACTGGAGGTGTTTAGTTACATGCCGGGGGATCA------------AGAAAGAGAAGGCCATCCCTGAGTGCTGGGTTAGCTTCATACATGTAGCTTCTAACCTCCTTTAGGCTTC s panTro4.chr17 66148460 142 - 82630442 ---AAATTTAGCAACCAGTAATAACCAAGGAGAATAGTAGTTACTGGAGGTGTTTAGTTACATGCCGGGGGATCA------------AGAAAGAGAAGGCCATCCCTGAGTTCTGGGTTAGCTTCTAACATGTAGCTTCTAACCTCCTTTAGGCTTC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47899920 142 - 81552678 ---ATTTTTAGCAACCAGTAATAACCAAGGAGAATAGTAGTTACTGGAGGTGTTCAGTTATATGCCGGGGGATCA------------AGAGAGAGAAGGCCATCCCTGAGTGCTGGGCTAGCTTCTAACATGTAGCTTCTAACCTCCTTTAGGCTTC i nomLeu3.chr19 I 1 C 0 s rheMac3.chr16 53013200 142 + 80904711 ---aaacttagcaaccagtaataacaaaggagaatagtagtgactggaggtgttcagttacatgccaggggatca------------agagagAGAAGGTCATCCCTGAGTGCTGGGCTAGCTTCTAACACGTAGCTTCTAACCTCCTTTAGGCTTC i rheMac3.chr16 I 4 C 0 s macFas5.chr16 52535751 142 + 80997621 ---aaacttagcaaccagTAATAACAAAGGAGAATAGTAGTGACTGGAGGTGTTCAGTTACATGCCAGGGGATCA------------AGAGAGAGAAGGTCATCCCTGAGTGCTGGGCTAGCTTCTAACACGTAGCTTCTAACCTCCTTTAGGCTTC i macFas5.chr16 I 4 C 0 s papAnu2.chr16 47580730 142 + 74645514 ---aaacttagcaacCGGTAATAACAAAGGAGAATAGTAGTTACTGGAGGTGTTCAGTTACATGCCAGGGGATCA------------AGAGAGAGAAGGTCATCCCTGAGTGCTGGGCTAGCTTCTAACACGTAGCTTCTAACCTCCTTTAGGCTTC i papAnu2.chr16 I 4 C 0 s chlSab2.chr16 9847103 142 - 75148670 ---AAACTTAGCAACCAGTAATAACAAAAGAGAATAGTAGTTACTGGAGGTGTTCAGTTATATGCCAGGGGATCA------------AGAGAGAGAAGGTCATCCCTGAGTGCTGGGCTAGCTTCTGACACGTAGTTTCTAACCTCCTTTAGGCTTC i chlSab2.chr16 I 7 C 0 s calJac3.chr5 112692454 144 + 159171411 ---cattttagcaactagtaatgaccaaggagaatagaagttactggaagtgttcagttacatgctgggggatcaa----------gagagAGAGAAGTCCAAACCTGAGAGCTGGGCTAGCTTCTAGCACGTAGCTTCTAACCTCCTTTAGGCATC i calJac3.chr5 I 1 C 0 s canFam3.chr9 39262224 142 - 61074082 gaatgttctagtaaccggagctaaccaGTGAAAACAGTATTAGTT----ATACCCAGTTACACCCTGGGTGACCAGATCAGACTGTGGGAGAGGAAAGTGTAGCCTTGAGTGCTGGGCCAGATT-----AGATAGATTCTA--CTTCT----ACTTC i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24674677 13 - 73212453 I e mm10.chr11 99433149 2256 + 122082543 I a score=276607.000000 s hg38.chr17_JH159146v1_alt 31719 93 + 278131 AGGATTCTGG--ACA-TTGAACCGTGCTTCCTTTATCAACAATGATATGGAAAGCTGAGT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA s panTro4.chr17 66148602 93 - 82630442 AGGATTCTGG--ACG-TTGAACCGTGCTTCCTTTATCAACAATGATATGGAAAGCCGAGT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24674690 93 - 73212453 AGGATTCTGG--ACG-TTGAACCGTGCTTCCTTTATCAACAATGATATGGAAAGCTGAGT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA i ponAbe2.chr17 I 13 C 0 s nomLeu3.chr19 47900062 93 - 81552678 AGGATTCTGG--ACA-TTGAACCGTGCTTCCTTTGTCAACAATGATATGCAAAGCTGAGT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53013342 95 + 80904711 AGGATTCTGGAAACA-TTGAACCGTGGTTCCTTTACCAACAATGATATGGAAAGCTGATT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52535893 95 + 80997621 AGGATTCTGGAAACA-TTGAACCGTGGTTCCTTTACCAACAATGATATGGAAAGCTGATT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47580872 95 + 74645514 AGGATTCTGGAAACA-TTGAACCGTGGTTCCTTTACCAACAATGATATGGAAAGCTGATT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9847245 95 - 75148670 AGGATTCTGGAAACA-TTGAATCGTGGTTCCTTTACCAACAATGATATGGAAAGCTGATT-----------ATCTGGAAGGACTACT-AAAGGAATTCTTTTTCAGAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112692598 90 + 159171411 AAGATTCTGGAAACA-TTGAACAG----------------AATGATACGGAAAGACTACTTTCCAACAATGATACGGAAAGACTACT-AAAGGAATTCTTGTTCATAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39262366 90 - 61074082 -------TGGAAGTACTTAAGGAGTAGCTCCTTTACCAACAAGAACGTGGAAAGCTGAGT-----------GTCATCAAGAACAACTAAAAGAAATCCCTTTTCAGGA i canFam3.chr9 C 0 C 0 e mm10.chr11 99433149 2256 + 122082543 I a score=592480.000000 s hg38.chr17_JH159146v1_alt 31812 141 + 278131 ACTTTTGCCACGTATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACACCGAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACATTTT s panTro4.chr17 66148695 141 - 82630442 ACTTTTGCCACGCATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACACCGAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACATTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24674783 149 - 73212453 ACTTTTGCCATGTATTCGGGAACCTACTTTCAGTCTGAAGTCCTCAGCAGCCCAGTTTAGCATTATCAATTTGCAGGACACACCGAGCATTTTGCAGTTTGAGCAATCCTTAAATCTGGAAAAATACATG---AAGAAAGAATGGACATTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47900155 141 - 81552678 ACTTTTGCCACGTATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTGTCAATTTGCAGGACACACCCAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACATTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53013437 141 + 80904711 ACTTTTGCCACATATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACATCGAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACAtttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52535988 141 + 80997621 ACTTTTGCCACATATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACATCGAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACAtttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47580967 141 + 74645514 ACTTTTGCCACATATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACATCGAGCATTTTGCAA-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAaagaat-gacatttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9847340 141 - 75148670 ACTTTTGCCACATATTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGACACATCGAGCATTTTGCAG-TTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACAtttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112692688 141 + 159171411 GTGTTTGCCACATGTTAGGGAACCTAC-TTCAGTCTGAAGTCCTCAGCAG-CCAGTTTAGCATTATCAATTTGCAGGATACACCGAGCGTTTTTCAG-CTGAGC-ATCCTT-AATCTGG-AAAATACATG----AGAAAGAAT-GACAtttt i calJac3.chr5 C 0 C 0 s mm10.chr11 99435405 145 + 122082543 ATTTTTACCGTGGTTTAGAGAACCTAC-TTCAATCTGAAGTCCTCTGCAG-CCAGCTTAGCATTGTCAATTCGCAGGACGCACTGGGCATTTTGTAC-TTGAGC-ATCCTT-AACCTGG-GAAATGTGAGAGGAAGGAAGAAT-GACATTTT i mm10.chr11 I 2256 I 813 s canFam3.chr9 39262456 135 - 61074082 AGTTTTACCATGGAGTT-AGAACCTAC-CTCAGCCTGAAGTCCTCAGCAG-CCAGTTTGGCATTATCAATCTGCAGGACACAACGAGCATTTTCCAG-TTGTGC-CTTTTT-AATCTGG-AAAAT---------AGAAAGAAT-GACATTTT i canFam3.chr9 C 0 C 0 a score=4500.000000 s hg38.chr17_JH159146v1_alt 31953 1 + 278131 C s panTro4.chr17 66148836 1 - 82630442 C i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24674932 1 - 73212453 C i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47900296 1 - 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53013578 1 + 80904711 c i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52536129 1 + 80997621 c i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47581108 1 + 74645514 c i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9847481 1 - 75148670 c i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112692829 1 + 159171411 c i calJac3.chr5 C 0 C 0 s canFam3.chr9 39262591 1 - 61074082 C i canFam3.chr9 C 0 I 93 e mm10.chr11 99435550 813 + 122082543 I a score=1011793.000000 s hg38.chr17_JH159146v1_alt 31954 385 + 278131 TTTtttatttatttatttatttatttatttatttatttattgagacagaatcttgctctgttgcccagactggagtgcaatggtacgatctcggctcactgtaacctctgcctcccaggttcaagcaattatcctgcctcagcctcccgagtagctggggttacaggcatccgccaccatgcccggctaatttttgcatttttagt-agagacagcattttgcc-atgttgg--ccaggctggtcttg-aagttctgacctca-ggtgatctgcctgcc-tcggcctcccaaa-gtgctgggattacaggcgtgagcc-accg-tgccc-ggccAAGAATGACATTTTCAA-CTGGATAGG-AGTTTACAA-GGATTTAGTTTAT-CCCCAGCTACAGTG s panTro4.chr17 66148837 385 - 82630442 ttatttatttatttatttatttatttatttatttatttattgagacagaaccttgctctgttgcccagactggagtgcaatggtatgatctcggctcactgtaacctctgcctcccgggttcaagcaattatcctgcctcagcctcccgagtagctggggttacaggcatccgccaccatgcccggctaatttttgcatttttagt-agagacagcattttgcc-atgttgg--ccaggctggtcttg-aagttctgacctca-ggtgatctgcctgcc-tcggcctcccaaa-gtgctgggattacaggcgtgagcc-accg-tgccc-agccAAGAATGACATTTTCAA-CTGGATAGG-AGTTTACAA-GGATTTAGTTTAT-CCCCAGCTACAGTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24674933 392 - 73212453 TTttttct-------tttcttttcttatttatttattaattgagacagaatcttgctctgctgctcaggctggaaggcagtggtgcgatctcggctcactctaacctctgcctcccgggttcaagcgattatcctgcctcagcctcccgagtagctggggttacaggcatccgccaccatgcctggctaatttttgcatttttagtaagagacagggttttgcc-atgttcgacccaggctggtcttgaaagtcctgacctcagggtgatcctcctgccttcagcctcccaaaggtgctgggattacaggcgtgagccaaccgttgcccggGCCAAGAATGACATTTTCAATTTGGATAGGAAGTTTACAATGGATTTAGTTTATCCCCCAGCTACAGTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47900297 373 - 81552678 ttt------------tttcttttcttgtttatttgtttattgagacagaatcttgctctgttgcccagattggagtgcaatggtacgatctcggctcactgtaacctctgcctcccgggttcaagcaattatcctgtctcagcctcccgagtagctggcgttacaggcatctgccatgatgcccggctaatttttgcatttttagt-agagacggcattttgcc-atgttgg--ccaggctggtcttg-aagtcctgacctca-ggtgatctgcctgcc-tcagcctccaaaa-gtgctgggattacaggcgtgagcc-atca-cgccg-ggccAAGAATGACATTTTCAA-CTGGATAGG-AGTTTACAA-GGATTTAGTTTAT-CCCCAGCTACAGTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53013579 373 + 80904711 ttt------------tttaaaaatttatttatttatttatttagacagaatcttgctctgttgcccaggctggagtgcaatggtgcgatcttggctcactgtaacctctgcctcccaggttcaagcgattctcctgcctcagcctctcgagtagctggggttacaagcatccaccaccatgcctggctaatttttgcatttttagt-agagatggggttttgcc-atgttgg--ctaggctggtgttg-aactcctgacctca-ggtgatccacctgcc-tcggcctcccaaa-atgctgggattacaggcgtgagcc-acca-cgccc-agccAAGAATGACATTTTCAA-TTGGATAGG-TATTTACAA-GGATTTAGTTTAT-CTCCAGTTGCAGTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52536130 373 + 80997621 ttt------------tttaaaaatttatttatttatttatttagacagaatctcgctctgttgcccaggctggagtgcaatggtgcgatcttggctcactgtaacctctgcctcccaggttcaagcgattctcctgcctcagcctctcgagtagctggggttacaagcatccaccaccatgcctggctaatttttgcatttttagt-agagatggggttttgcc-atgttgg--ctaggctggtgttg-aactcctgacctca-ggtgatccacctgcc-tcggcctcccaaa-atgctgggattacaggcgtgagcc-acca-cgccc-agccAAGAATGACATTTTCAA-TTGGATAGG-TATTTACAA-GGATTTAGTTTAT-CTCCAGCTGCAGTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47581109 373 + 74645514 ttt------------tttaaaaatttatttatttatttatttagacagaatcttgctctgttgcccaggctggagtgcaatggtgcgatcttggctcactgtaacctctgcctcccaggttcaagcggttctcctgcctcagcctcccgagtagctggggttacaagcatccaccaccatgcctggctaatttttgcatttttagt-agagatggggttttgcc-atgttgg--ccaggctggtgttg-aactcctgacctca-ggtgatccacccgcc-tcggcctcccaaa-atgctgggattacaggcgtgagcc-acca-cgccc-aaccaagaATGACATTTTCAA-TTGGATAGG-TGTTTACAA-GGATTTAGTTTAT-CTCCAGCTGCAGTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9847482 373 - 75148670 ttt------------tttaaaaatttatttatttatttatttagacagaatcttgctctgttgcccaggctggagtgcaatggtgcgatcttggctcactgtaacctctgcctcccagattcaagcgattctcctgcctcagcctcctgagtagctggggttacaagcatccaccaccatgcccggctaatttttgcatttttagt-agagatggggttttgcc-atgttgg--ccaggctggtgttg-aactcctgacctca-ggtgatccacccgcc-tcggcctcccaaa-atgctgggattacaggcgtgagcc-acca-cgccc-agccAAGAATGACATTTTCAA-TTGGATAGG-TGTTTACAA-GGATTTAGTTTAT-CTCCAGCTGCAGTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112692830 363 + 159171411 ttt------------t-----------tttcttttttttttgagatggagtctcactctgtcatccaggctggagtgcaatggtgcaatctcggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagtctccctagtagctgggattagaggcgtccgtcaccacgcccggctaatttttgcatttataat-agagataggactgtccctactaaag--acaggctggtctcg-aactcctgacctca-ggtcatccgcccgcc-tcggcctcccaaa-gtgctgagactacaggcgtgagcc-acag-cgccc-ggccAAGAATGACATTTTCAG-CTGGATAGG-ATTTTACAA-AGATTGAGTTTAT-CCTCAGCTACAGTG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39262592 93 - 61074082 I e mm10.chr11 99435550 813 + 122082543 I a score=1526357.000000 s hg38.chr17_JH159146v1_alt 32339 490 + 278131 AC-TATTAT-GTCAAAAATGATGTTCA--TTTCAAGTA--TTTCTACATGAAAATATATAGAAAAAATAATGAC--ATAGTTA-TTTAACATAACAGAGTCAT-AAAATGCAACT-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAT-AATTTAACTCAACTTG-AGTCATCACACCTT-ATTGagtgccttgcctttga---tgtttctacttaggacatttcttttagcccctgtggtctggtgaactcccattcctccctcatgtctcaggttcgacaacattgct-tcataggagccttcacagatgctctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtgtg------ctggtccctctgtccatccctgtatcctcataaatcatattgtgtccaccataatattcctcagtccccagcatggtgcccagcacctagttagtgttcattcagtattggct-gaatgaaagaaCA s panTro4.chr17 66149222 490 - 82630442 AC-TATTAT-GTCAAAAATGATGTTCA--TTTCAAGTA--TTTCTACACGAAAATATATAGAAAAAATAATGAC--ATAGGTA-TTTAACATAACAGAGTCAT-AAAATGCAACT-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAT-AATTTAACTCAACTTG-AGTCATCACACCTT-ATTGagtgccttgcctttga---tgtttctacttaggacattccttttagcccctctggtctggtgaactcccattcctccctcctgtctcaggttcgacagcattgct-tcataggagccttcacagatgctctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatctctctgtgtg------ctggtccctctgtccatccctgtatcctcataaatcatattgtgtccaccataatattcctcagtccccagcatggtgcccagcacctagttagtgttcattcagtattggct-gaatgaaagaaCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24675325 509 - 73212453 ACTTATTATGGTCAAAAATGATGTTCAATTTCAAAGTAATTTCCTGTACAAAAATATATAGAAAAATAATGGAC--ATGGGTATTTTAACATAATAGAGTCATAAAAATGCAACTCCTAGATGCCCCAAGGGTTTGGGCTCTACTTCTCTTGTGAATTTTACAGAAGGGTAAATTTAACTCAACTTGTAGCCATCACACCTTGATTGAGTAccttgcctttga---tgtttctacttagaacatttcttttagcccctctggtctggtgaactcccattcctccctcatgtctcaggttagacaacattgctatcaaaggagccttcacagatgctctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtgtg------ctggtctctctgtccctccctgtatccttataaatcatattgtgtccaccataatattcctcagtccccagcatggtgcccagcacctagttagtgttcattcagtattggctcgaatgaaAGGACA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47900670 490 - 81552678 AC-TATTAT-GTCAAAAATGATGTTCA--TTTCAAGTA--TTTCTACACGAAAATATATAGAAAAAATAATGAC--GTGGGTA-TTTAACATAATAGAGTCAT-AAAATGCAACT-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAT-AATTTAACTCAACTTG-AGTCAtcacgcctt-actgagtgccttgcctttga---tgtttctacttaggacatttcttttagcccctctggtctggtgaactcccattcctccctcgtgtctcaggttcgacaacattgct-tcaaaggagccttcacagatgctctcaa---------acctgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtgtg------ttggtccctctgtccatccctgtatcctcataaatcatattgtgtccaccataatattcctcagtccccagcatggtgcccagaacctagttagtgtttattcagtattggct-gaatggaagaaCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53013952 482 + 80904711 AC-TATTAT-GTCAAAAATGATGTTTA--TTTCAAGCA--TTTCTACAAGAAA--ATATAGAAAAAATAATGAC--ATGGGTG-TTTAACATAATAGAGTCAC-AAAATGCAACC-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAG-AAT-----TTAACTTG-AGTCATCAGAACTT-Actgagtgcctcacctttga---tgtttcagcttataatgtttcttttagcccctctggtctggtgagctcccattcctccctcatgtctcaggttcgacaacattgct-tcaaaggagccttcacagatactctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtgtg------ctggtccctctgtccatccctgtttcctcataaatcacattgtgtccaccatactattcctcagtgcctagcatggtgcccagcacctaggtagtg-tcattcagtattggct-gaatgaaagaaCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52536503 487 + 80997621 AC-TATTAT-GTCAAAAATGATGTTTA--TTTCAAGCA--TTTCTACAAGAAA--ATATAGAAAAAATAATGAC--ATGGGTG-TTTAACATAATAGAGTCAT-AAAATGCAACC-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAG-AATTTAACTTAACTTG-AGTCATCAGAACTT-ACTGAGtgcctcgcctttga---tgtttcggcttataatgtttcttttagcccctctggtctggtgagctcccattcctccctcatgtctcaggttcgacaacattgct-tcaaaggagccttcacagatgctctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtGTG------CTGGTCCCTCTGTCCATCCCTGTTTCCTCATAAATCACAttgtgtccaccatactattcctcagtgcctagcatggtgcccagcacctagttagtg-tcattcagtattggct-gaatgaaagaaCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47581482 487 + 74645514 AC-TATTAT-Gtaaaaaatgatgttta--tttcaagca--tttctacaagaaa--atatagaaaaaataatgac--atGGGTG-TTTAACATAATAGAGTCAT-AAAATGCAACC-CTAGATGCCCC-AGGGTTTGG--TCTACTT-TCTTGTG-ATTTTACAGAAGGAG-AATTTAACTTAACTTG-AGTCATCAGAACTT-ACTGAGTGCCTCGCCTTTGA---TGTTTTGGCTTATAACGTTTCTTTTAGCCCCCCTGGTCTGGTGAGCTCCCATTCCTCCCTCATGTCTCAGGTTCGACAACATTGCT-TCAAAGGAGCCTTCACAGATGCTCTCAA---------AACTGAACT------GGATGATCTGCCTGTGCTCTCA-----------------------------TTATCCCTCTGTGTG------CTGGTCCCTCTGTCCATCCCTGTTTCCTCATAAATCACATTGTGTCCACCATACTATTCCTCAGTGCCTAGCATGGTGCCCAGCACCTAGTTAGTG-TCATTCAGTATTGGCT-GAATGAAAGAACA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9847855 487 - 75148670 AC-TATTAT-GTCAAAAATGATGTTTA--TTTCAAGCA--TTTCTACAAGAAA--ATATAGAAAAAATAATGAC--ATGGGTG-TTTAACATAATACAGTCAT-AAAATGCAACC-CTAGATGCCCC-AGGGTTTGG--TCTTCTT-TCTTGTG-ATTTTACAGAAGGAG-AATTTAACTTAACTTG-AGTCATCAGAACTT-ATTGAGtgcctcgcctttga---tgtttcggcttagaacgtttcttttagcccctctggtctggtgagctcccattcctccctcatgtctcaggttcgacaacattgct-tcaaaggagccttcacagatgttctcaa---------aactgaact------ggatgatctgcctgtgctctca-----------------------------ttatccctctgtGTG------CTGGTCCCTCTGTCCATCCCTGTTTCCTCATAAATCACAttgtgtccaccatactattcctcagtgcctagcatggtgcccagcacctagttagtg-tcattcagtattggct-gaatgaaagaaCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112693193 499 + 159171411 AC-TATTAC-GTAAAAACTGATGTTCA--TTTTGAGTA--TTTCTACATGAAAACAGATAGAAAAA-TCATGAC--ATTGGTA-TTTAACGTAATAGAGTCAT-AAAATGCAACT-CTAGA--CCCC-AGAGTTTGC--TCTGCTT-TCTTGTG-ATTTTACGGAAGGAG-AATTTAACTCACCTTT-GATCATCAGAACTT-ATTGagtgccttgcctttgg---tgtttctgcttagaacatttctattagcctctcttgcctggtgaactcccattcttccctcatgtctcaggttcaacaacattgct-tcaaagaagccttcacagatgctctcaaatgcttcacaaatgctctcttcacagatgatctgcctgtgctctca-----------------------------ttatccctctgtgtg------cgggttccc---tctatccctgtttcatcatgaatcacattgtgtccaccataatattccccagtgcccagcatggtacccagcacctagttagtgttcattcagtattggcc-gaaagaaagaaCA i calJac3.chr5 C 0 I 315 s canFam3.chr9 39262685 500 - 61074082 at-taatat-ataaaaa----------------aagaa--TTTCCACATGAAA----ATAGAAAGAATAATGATAAATGGGCA-TTTAACATAATTGAGTCAT-AAAACATAGTT-CTTGT--CCCT-AGGATTTGG--TGAGCTT-TCTTACG-GTTTTACA-AAGGAA-AAATTCTTTCTACTTG-AGCCATCAAAcctt-actgagtgcctgccatttgatgttgttcctgcttagaatattcttgttacccctcctcatttggtgaact---acttcttttccacatctcatcttagacatcattgct-taaaggaagcc-tcggtgatttcctcaa---------ggcagaact------ggatgaactgcctatgttctcactgccctgcccagccctccttgctagcatttatccctcggtgtgggataaatgttccttttgtctctgcctgtttccccctaaatcacg-tatgttcaccatgatattcctcaatgcccagcatggtacccagc----agctagtgtgtactaaatattggct-aaatgaatggaCA i canFam3.chr9 I 93 I 2 e mm10.chr11 99435550 813 + 122082543 I a score=40175.000000 s hg38.chr17_JH159146v1_alt 32829 23 + 278131 TGATGCATGAAA---GAACGAAATGC-------------------------------------------------- s panTro4.chr17 66149712 23 - 82630442 TGATGCATGAAA---GAACGAAATGC-------------------------------------------------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24675834 23 - 73212453 TGATGCATGAAA---GAACTAAATGC-------------------------------------------------- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47901160 23 - 81552678 TGATGCATAAAA---GAACTAAATGC-------------------------------------------------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53014434 23 + 80904711 TGATACATAAAA---GAACTAAATGC-------------------------------------------------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52536990 23 + 80997621 TGATACATAAAA---GAACTAAATGC-------------------------------------------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47581969 23 + 74645514 TGATACATAAAA---GAACTAAATGC-------------------------------------------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9848342 23 - 75148670 TGATGCATAAAA---GAACTAAATGC-------------------------------------------------- i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39263187 76 - 61074082 TGTTATGTGAGAGTTGTGCTAAGCACTGGAACTGTCAGGATGGGTATGCCCTCGATTTAAAAAAAAGGGGGAATTC i canFam3.chr9 I 2 C 0 e mm10.chr11 99435550 813 + 122082543 I e calJac3.chr5 112693692 315 + 159171411 I a score=39561.000000 s hg38.chr17_JH159146v1_alt 32852 14 + 278131 --ATGATGGAGGCATA-------- s panTro4.chr17 66149735 14 - 82630442 --ATGATGGAGGCATA-------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24675857 14 - 73212453 --ATGATGGAGGCATA-------- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47901183 14 - 81552678 --ATGATGGAGGCATA-------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53014457 14 + 80904711 --ATGATGGATGCATA-------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52537013 14 + 80997621 --ATGATGGATGCATA-------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47581992 14 + 74645514 --ATGATGGATGCATA-------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9848365 14 - 75148670 --ATGATGGATGCATA-------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112694007 14 + 159171411 --ATGATGGACGCATA-------- i calJac3.chr5 I 315 C 0 s canFam3.chr9 39263263 24 - 61074082 ACCTAATGGGTGAATTCTCTACGA i canFam3.chr9 C 0 C 0 e mm10.chr11 99435550 813 + 122082543 I a score=118181.000000 s hg38.chr17_JH159146v1_alt 32866 31 + 278131 TAGATGAAAA----ATCTACTTGCAGAAGATGTTA s panTro4.chr17 66149749 31 - 82630442 TAGATGAAAA----ATCTACTTGCAGAAGATGTTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24675871 31 - 73212453 TAGATGAAAA----ATCTACTTGCAGGAGATGTTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47901197 31 - 81552678 TAGATGAAAA----ATCTACTTGCAGAAGATGTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53014471 31 + 80904711 TAGATGAAAA----ATCTACTTGCAGAGGATGTTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52537027 31 + 80997621 TAGATGAAAA----ATCTACTTGCAGAGGATGTTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47582006 31 + 74645514 TAGGTGAAAA----ATCTACTTGCAGAGGATGTTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9848379 31 - 75148670 TAGATGAAAA----ATCTACTTGCAGAAGATGTTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112694021 31 + 159171411 TAGATAAAAA----ATCTAGGTGCAGAAGATGTTA i calJac3.chr5 C 0 C 0 s mm10.chr11 99436363 31 + 122082543 TAGATTAGAA----GTCTACTTCTAGAAGATTTTA i mm10.chr11 I 813 C 0 s canFam3.chr9 39263287 35 - 61074082 TACATAAGGATCTCGTCTGCTTTTAAAAGATGTTA i canFam3.chr9 C 0 I 210 a score=1258189.000000 s hg38.chr17_JH159146v1_alt 32897 360 + 278131 CAATGAC-ATTTCTCTTTCAATGGACCCAGTTTTGGAGAGGGCTG-----CTTCCTATGGTTGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TCAGATGAA-CCAAACTAGAGTCAGAAA-------CACGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCTTGCGAAGGATGAACTTTATTCCGGAAGGGCTATTTAAATGCCATTGCTTCACATGCCCATAGTTTCTAAAA-TTCCAAAGTAACTTCCCATGGAGTCCGAATCAAATTGCCCTGATGTTT--------AGTACAACTCAAGAAAAACAGACTTGCTGGTAAGTAAATGCGCTTTGCTCTAAAGGAGT----ATG-AATC---------TTAACAC--A----- s panTro4.chr17 66149780 362 - 82630442 CAATGAC-ATTTCTCTTTCAATGGATCCAGTTTTGGAGAGGGCTG-----CTTCCTATGGTTGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TGAGATGAA-CCAAAGTAGAGTCAGAAA-------CACGAGACAGGTG--TGG-----------------TTCAAACAT----TTTTAGTGAGAGCCTGCGAAGGATGAACTTTATTCCGGAAGGGCAATTTAAATGCCATTGCTTCACATGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATGGAGTCCGAATCAAATTGCCCCGATGTTT--------AGTACAACTCAAGAAAAACAGACTTGCTGGTAAGTAAATGCGCTTTGCTCTAAAGGAGT----ATG-AATC---------TTAACACAGA----- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24675902 361 - 73212453 CAATGAC-ATTTCTCTTTCAATGGACCCAGTTTTGGAGAGGGCTG-----CTTCCTATGGTTGGGACTGTCCAGCTC--------AATGGGACAGATGGACTGTGTCTGTGTATTCTGAGATGAA-CCAAAGCAGAGTCAGAAA-------CACGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTGTGAAGGATGAACTTTATTCCGGAAGGGCAATTTAAATACCATTGCTTCACATGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATAGAGTCCGAATCAAATTGCCCTGATGTTT--------AGTACAACTCTAGAAAAACAGACTTGCTGGTAAGTAAATGGGCTTTGCTCTAAAGGAGT----ATG-AATC---------TTCACAC--A----- i ponAbe2.chr17 C 0 I 5742 s nomLeu3.chr19 47901228 360 - 81552678 CAAGGAC-ATTTCTCTTTCAATGGACCCAGTTTTGGAGAGGGCTG-----CTTCCTACGGTTGGGACTGTTCAGCTC--------AATGGGACGGACGGCCTGTGCCTGTGTATT-TGAGATGAA-CCAAAGTAGAGTCAGAAA-------CACGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTGAGAAGGATGAACTTTATTCCAGAAGGGCAATTTAAATACCATTGCTTCACATGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATAGAGTCCGAATCAAATTGCCCTGATGTTT--------AGTACAACTCAAGAAAAACAGACTTGCTGATAAGTAAATGGGCTTTGCTCTAAAGGAGT----ATG-AATC---------TTCACAC--A----- i nomLeu3.chr19 C 0 I 2 s rheMac3.chr16 53014502 364 + 80904711 CAATGAC-ATTTCTCTTTCAATGGATCCAGTTTTGGAGAGGGCTG-----CTCCCTACGGTTGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TGAGATGAG-CCAAAGTAGAGTCAGAAA-------CATGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTAAGAAGGAGGAACTTTATTCCGGAAGGGCAATTTAAATACCATTGCTTCACACGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATAGAGTCCGAATCAAATTGCTCTGATGTTT--------AGCACAACTCAAGAAAAATAGACTTGCTGGTAAGTAAATGGGCTTTACTCTAAAGGAATATGAATG-AATC---------TTAACAC--A----- i rheMac3.chr16 C 0 I 2 s macFas5.chr16 52537058 364 + 80997621 CAATGAC-ATTTCTCTTTCAATGGATCCAGTTTTGGAGAGGGCTG-----CTCCCTATGGTTGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TGAGATGAG-CCAAAGTAGAGTCAGAAA-------CATGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTAAGAAGGAGGAACTTTATTCCAGAAGGGCAATTTAAATACCATTGCTTCACACGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTTCCATAGAGTCCGAATCAAATTGCTCTGATGTTT--------AGCACAACTCAAGAAAAATAGACTTGCTGGTAAGTAAATGGGCTTTACTCTAAAGGAATATGAATG-AATC---------TTAACAC--A----- i macFas5.chr16 C 0 I 2 s papAnu2.chr16 47582037 360 + 74645514 CAATGAC-ATTTCTCTTTCAATGGATCCAGTTTTGGAGAGGGCTG-----CTCCCTACGGATGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TGAGATGAG-CCAAAGTAGAGTCAGAAA-------CATGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTAAGAAGGAGGAACTTTATTCCGGAAGGGCAATTTAAATACCATTGCTTCACACGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATAGAGTCCGAATCAAATTGCTCTGATGTTT--------AGCACAACTCAAGAAAAATAGACTTGCTGGTAAGTAAATGGGCTTTACTCTAAAGGAGT----ATG-AATC---------TTAACAC--A----- i papAnu2.chr16 C 0 I 2 s chlSab2.chr16 9848410 360 - 75148670 CAATGAC-ATTTCTCTTTCAATGGATCCAGTTTTGGAGAGGGCTG-----CTCCCTATGGTTGGGACTGTCCAGCTC--------AATGGGACGGATGGCCTGTGCCTGTGTATT-TGAGATGAG-CCAAAGTAGAGTCAGAAA-------CATGAGACAGGTG--TGG-----------------TTCGAACAT----TTTTAGTGAGAGCCTAAGAAGGATGAACTTTATTCCGGAAGGGCAATTTAAATACCATTGCTTCACACGCCCATAGTTTCTAAAA-TTCCAAAGCAACTTCCCATAGAGTCCGAATCAAATTGCTCTGATGTTT--------AGCACAACTCAAGAAAAATAGACTTGCTGGTAAGTAAATGGGCTTTACTCTAAAGGAGT----ATG-AATC---------TTAACAC--A----- i chlSab2.chr16 C 0 I 2 s calJac3.chr5 112694052 360 + 159171411 -AATGACTTTTTCTCTTTCAGTGGATTCAGTTTTGGAGAGGGCTG----CCTTCCTATTATTGCGACTGTCCAGCTC--------AATGGGATGGGTGGCCTGTGCCTGAGTATT-TGAGATGAG-CCAAAGTAGAGTCAGAAA-------CACAAGACAGGTG--CGG-----------------TTCGAACGT----TTTTAGTGAGAGCCTGAGAAGGATGAACTTTATTCCGTAAGGGCAATTTAATTACCATTGCTTCACATGCCCATAGTTTCTAAAA-TTCCAAAGCAACTCCCCATAGAGTCTGAATCAAATTGCACTGATATTT--------AGTACAATTCAAGAAAAAAAG-CTTGCTGATAAGTAAGTGGGCTTTGCTGTAAAGGAGT----ATG-AATC---------TTAACAT--A----- i calJac3.chr5 C 0 I 2 s mm10.chr11 99436394 336 + 122082543 ----GAC-ATATCCCTTTCAGCGG--CTATTCCTGGAGAGAG--------GTCCCTA-----ACCACTGGTCA--CT--------AATGG----------CTGTGCCTAAGTACT-ATGGGTAATCCCCAAGTCAATTCAAAAGCGTCAACCATGAGAGAAGTGCTTAA-----------------TTTGAATTTTGTGTTGTATCGAGAAGCCTGAAGGACCGTCCTGTTGATGAGAAGGGCAATGTAAGCACCA------CACAGCTTCATGGG------------------------CTATGAAGTCTGAATTAAGCTGCATTGATGCCTGTAATTCAAACAGAACTCAAGACAAG-AGGCCTGTGGTTAAGACAAAGGTCTTTGCTCTAAAGGCCT----TTGCAATCATTTCGAGATTTAAAC--A----- i mm10.chr11 C 0 I 1 s canFam3.chr9 39263532 400 - 61074082 CAGTGAC-ATGTCTCTTTCAACAGATCTAGTCCTGGAGTGAGCTGCCTTCCTTCCTAT-ACTGAGTCTGTTCCCCCCCCGCCCCAAATGGAACAGATGA-CTGTGTCTATGTGTT-TGGGATGAT-CCAAAGTAGATTCAGAAACATGAATCATGAGACAGGTA--GGGGAGAATGGTTTGCTGATTTTGACCAT----TTTTAGTGGGAGCCTGAGAAGAATGACCTGT-TGGCAGAGAGATAATTTAGACACCTTTGCCTCACCTCCCCGTAGTTCCTGAAACCCCCAAAGTAACTTACAGTGGAGTCTGGTTTAAATTTCACTGACGTCT--------AATACAACACAAGAAAAAGAGACTTCCTGGTTAGGAGGTGGCCTTTGCTTTAAAGGAAT----ATG-AATG---------TTAAAAA--AATAGA i canFam3.chr9 I 210 C 0 a score=1092230.000000 s hg38.chr17_JH159146v1_alt 33257 296 + 278131 AATTACAGTGAACA-------CTTTTCTTAATTAGATAAGAACTTTAATTTGAAGCAAGTGCTCTGTGTC-ATATCTGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGAAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGTAATAAACATGAATTGGGGGCAATAGAACATTTTATTACTGTAGAAGTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG s panTro4.chr17 66150142 296 - 82630442 AATTACAGTGAACA-------CTTTTCTTAATTAGATAAGAACTTTAATTTGAAGCAAGTGCTCTGTGTC-ATATCTGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGAAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGTAATAAACATGAATTGGGGGCAATAGAACATTTTATTACTGTAGAAGTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24682005 278 - 73212453 AATGACAATGAACA-------CTTTTCTTGATTAGGTAAGAACTTTAATTCGAAGCAAGTGCTCTGTGTC-ATATCTGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGTAGCTGATAAAATACAGAGCTCCACCCCTTTTTTTTGATGACATAAGAGGAGGTTGTGATATGATTGTAATAAACGTGAATTGGGGGCAATAGAAAATTTTAT--------------------AACTGCTTGATGCTGATGGTCATGTTATTAAACGGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG i ponAbe2.chr17 I 5742 C 0 s nomLeu3.chr19 47901590 296 - 81552678 AATGACAGTGAACA-------CTTTTCTTGATTAGGTAAGAACTTGAATTCGAAGCAAGTGCTCTGTGTC-ATATCTGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGCAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGCAATAAACGTGAATTGGGGGCAATAGAACATTTTATTACTGTAGAAGTAGTTTCTGAACTGCTTAATGCTGATGGTCATGTTATTAAATGGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG i nomLeu3.chr19 I 2 C 0 s rheMac3.chr16 53014868 296 + 80904711 AATGACAGTGAACA-------CTTCTCTTGATTAGATAAGAGCTTTAATTCGAAGCAAGTGCTCTGTGTC-ATATATGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGCAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGCAATAAACATGAATTGGGGGCAATAGAATATTTTATTACTGTAGAATTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG i rheMac3.chr16 I 2 C 0 s macFas5.chr16 52537424 296 + 80997621 AATGACAGTGAACA-------CTTCTCTTGATTAGATAAGAGCTTTAATTCGAAGCAAGTGCTCTGTGTC-ATATATGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGCAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGCAATAAACATGAATTGGGGGCAATAGAATATTTTATTACTGTAGAATTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG i macFas5.chr16 I 2 C 0 s papAnu2.chr16 47582399 296 + 74645514 AATGACAGTGAACA-------CTTTTCTGGATTAGATAAGAACTTTAATTCGAAGCAAGTGCTCTGTGTC-ATATATGAAATGTTCAATTAGGAGCAAAGTCTTCTGCTTCTATTCCATGCAACTGATAAAATACAGAGCTCCACCC--tttttttGATGACATAGGAGGAGGTTGTGATATGATTGCAATAAACATGAATTGGGGgcaatagaatattttattactgTAGAATTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCATCA--------------------------------------------------------------TTAAG i papAnu2.chr16 I 2 C 0 s chlSab2.chr16 9848772 296 - 75148670 AATGACAGTGAACA-------CTTTTCTTGATTAGATAAGAACTTTAATTCAAAGCAAGTGCTCTGTGTC-ATATATGAAATTTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGCAACTGATAAAATACAGAGCTCCACCC--TTTTTTTGATGACATAGGAGGAGGTTGTGATATGATTGCAATAAACATGAATTGGGGGCAATAGAATATTTTATTACCGTAGAATTAGTTTCTGAACTGCTTGATGCTGATGGTCATGTTATTAAACAGGGCACTTAAAAATCCAGGCACCA--------------------------------------------------------------TTAAG i chlSab2.chr16 I 2 C 0 s calJac3.chr5 112694414 292 + 159171411 AATGAAAATGAACA--------TTTTTTGGATTATATAAGAACTTTAATTTGAAGCGAGTGCTCTGTGTC-ATATCTGAAATCTTCAATTAGGAGCAAAGTCTTCTGCTTTTATTCCATGCAACTGGTAAAATACGGAGCTCCACC---TTTTCTTGATGACATAGGATGAGGTTGTGATATGATTGCAATAAATGTGTATT-GGGGCAATAGAACCTTTTATTACTGTAGAAGTACTTTCTGAACTGCTTGGTGATGATGATCATGTTAAT-AACAGGGCATTTAAAAACCCAGGCATCG--------------------------------------------------------------TTAAA i calJac3.chr5 I 2 C 0 s mm10.chr11 99436731 358 + 122082543 AACCCAAGGGGAGG-------CTTTTCCTGATGAGATAAGAACCCCGGGGCTGGGCAAATGGTGTGTGCCGATGCTTGAGGTCCTCAGTCAGGAGCGAAGTCTCCCACTTTTATTCCATTGGCTTTATAGAAAGGGGAACCCCACC---TACCATGGATGACACAGGAACAGATTGTGATATGACTGTAATAAACTTAAATTGGGGGCAATAGAACATTTTATTATCACAGAGGTGCATTATAAAATGCTTGGTGATAGTGAGGAGATAATTAAATAAGACACTAAAAAATCCAGGTATCAGaaccgtgtatggtggcacagttctttaaccccagtgctgaggcagtggaggcaggaggatggtgag i mm10.chr11 I 1 C 0 s canFam3.chr9 39263932 286 - 61074082 AATGAAAATGAATGGGATTTTCCCCCTTTGGTTAGATAAGATTTTGAAAGCAAAGCAAGTGCTCC-TGTC-ATATCTGAACCCTTCAATTAGGAGCAAAGTCCATATCCTTTATTGCACACAACTGATAAAA--CAGAGCTCCATCT--TTT----------GTGAGAGTAGGTTGTGGTAT---TGCAACAAATTTGAATTGGGGGCAATAGAACATTTTGTTCCTGTAGAAGTGATTTCTGAACT-TGTGATGATGATGATGAGATCATTAAGCAGGACATTTAAAAATCTAGACGTCA--------------------------------------------------------------TTgag i canFam3.chr9 C 0 I 412 a score=1679.000000 s hg38.chr17_JH159146v1_alt 33553 2 + 278131 AC s panTro4.chr17 66150438 2 - 82630442 AC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24682283 2 - 73212453 AC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47901886 2 - 81552678 AC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53015164 2 + 80904711 AC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52537720 2 + 80997621 AC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47582695 2 + 74645514 AC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9849068 2 - 75148670 AC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112694706 1 + 159171411 A- i calJac3.chr5 C 0 C 0 s mm10.chr11 99437089 2 + 122082543 gt i mm10.chr11 C 0 C 0 e canFam3.chr9 39264218 412 - 61074082 I a score=32715.000000 s hg38.chr17_JH159146v1_alt 33555 17 + 278131 CCATATT------------------------------------------------------------------------------CCTGCCACAC s panTro4.chr17 66150440 17 - 82630442 CCATATT------------------------------------------------------------------------------CCTGCCACAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24682285 17 - 73212453 CCATATT------------------------------------------------------------------------------CGTGCCACAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47901888 17 - 81552678 CCATGTT------------------------------------------------------------------------------CCTGCCACAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53015166 17 + 80904711 CCATATT------------------------------------------------------------------------------CCTGCCACAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52537722 17 + 80997621 CCATATT------------------------------------------------------------------------------CCTGCCACAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47582697 17 + 74645514 CCATATT------------------------------------------------------------------------------CCTGCCACAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9849070 17 - 75148670 CCATGTT------------------------------------------------------------------------------CCTGCCACAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112694707 17 + 159171411 CCATATT------------------------------------------------------------------------------CCTGCGCTGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99437091 95 + 122082543 ccagactagcctgggatacacagatcttgtatcaaagaGCAGTTcatccatccatccatccatccatccatccatccatccatccCCTATCACAC i mm10.chr11 C 0 I 43 s canFam3.chr9 39264630 16 - 61074082 CTATATT------------------------------------------------------------------------------CCTTCCCCT- i canFam3.chr9 I 412 C 0 a score=413547.000000 s hg38.chr17_JH159146v1_alt 33572 147 + 278131 TGTTTCCACCCAGAATCACTTTGCTATTTAAATCTGCAGTACAGTATTCTAATAGTCATA--TTATAACATTTACTTAAATAAAAGG-AGAAAAG--TCTTTGAATTTACTGGGGTTTCAAAACTTGATAAGGACTAGGTGAAAAACTAAGA s panTro4.chr17 66150457 147 - 82630442 TGTTTCTACCCAGAATCACTTTGCTATTTAAATCTGCAGTACAGTATTCTAATAGTCATA--TTATAACATTTACTTAAATAAAAGG-AGAAAAG--TCTTTGAATTTACTGGGGTTTCAAAACTTGATAAGGACTAGGTGAAAAACTAAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24682302 147 - 73212453 TGTTTCCACCCAGAATCACTTTGCTATTTAAATCTGCAGTACAGTATTCTAATAGTAATA--TTATAACATTTACTTAAATAAAAGG-AGAAAAG--TCTTTGAATTGACTGGGGCTTCAAAGCTTGATAAGGACTAGGTGAAAAACTAAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47901905 147 - 81552678 TGTTTCCACCCAGAATCACTTTGCTATTTAAATCTGCAGTACAGTATTCTAATAGTCATA--TTATAACATTTACTTAAATAAAAGG-AGAAAAG--TCTTTGAATTGACTGGGGTTTCAAACCTTGATGAGGACTAGGTGAAAAACTAAGA i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52537739 146 + 80997621 TGTTTCCACCCAGAATCACTTTGTTACTTAAATCTGCAGTACAGTATTCTAATGGTCATACCTTATAATATTTACTTAAATAAAAGG-AGAAAAG--TCTTTGAATTGACTGGGGTTTCAAAACTTG---AGGACTAGATGAAAAACTAAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47582714 146 + 74645514 TGTTTCCACCCAGAATCACTTTGTTATTTAAATCTGCAGTACAGTATTCTAATGGTCATACCTtataatatttacttaaataaaagg-agaaaag--tcTTTGAATTGACTGGGGTTTCAAAACTTG---AGGACTAGATGAAAAACTAAGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9849087 146 - 75148670 TGTTTCCACCCAGAATCACTTTGTTATTTAAATCTGCGGTACAGTATTCTAATAGTCACACCTTATCATATTTACTTAAATAAAAGG-AGACAAG--TCTTTGAACTGACTGGGGTTTCAAAACTTG---AGGACTAGATGAAAAACTAAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112694724 146 + 159171411 TGTTTCTACCCTGAGTCACTTTGCTATTTAAATCTGCAGCACAGTATTCTAATAGTCATC--TTGTAACATTTACTTAAATAAAAGT-AGAAAAG--TCTCTGAATTGACTGGGGTTTCAAAACTTGGTGAGGACTCGGTG-AAAACTAAGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99437229 142 + 122082543 TGTATCCACCCTGAACCCTTTTGTTATTTATACCCATAGTAGGTTAATATATTTG-------TTATAACATTCATAT-AATGAAAGA-TGAAAAATCTCTTTAAATCAACTTGAGTCTTCAAAGTTAGTAAAGACTA-CTGGCAAACTCACA i mm10.chr11 I 43 C 0 s canFam3.chr9 39264646 143 - 61074082 TATTTCCACCCTGAATCACTTTGTCATTCAAATTTATGATACAGTATCTTAATACTTATA--TTATAGCATTTACATAAATTAAAGGAAGAATTA--TCTCTAAGTTGACTGGGAATTCAAAAGTTAATGGGAATTGGGTGAAAAAA----- i canFam3.chr9 C 0 C 0 e rheMac3.chr16 53015183 0 + 80904711 C a score=4529352.000000 s hg38.chr17_JH159146v1_alt 33719 1196 + 278131 GAGATTTATCACGTAATTAATTTTTAGCTCTTTTCAGA--AAGATTGTTCACTATACATTTAGCCCTGATGTGATAAGCTGTGACAAAGATTCA---TTTTATTCCGGAGGATAAAATGTTCATATTTTGTATGTAATTGTGTT---AAACATTAAAAATAGCATGATTTAAGGTCATCCTGTTGTACAGTCAGGTACTCCAGCACTAAAGGTAGATGAAAGA-------ATTTTTATAGATGTAACATTTTAGCCTAATTTGCTTTACAAAGTCCATTTGGACCTACCTAACATAGATAACCTCTTG----ATTTATCTTGAAGCT-AAACACAGA-GTAG------GAAACACAAGCATCATCTCTCACCTGACTTCGCAGCTCTTCAATTTGTCTGTAATATGCACTGTAGTCGCGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATTTGCACTTCAAGTTTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCTGTGAGATCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCCCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCGTCCCGAGGCGCTGCAT---------------------GCCCACTGTACTGACTACAGGGGCCTGCAAGGAGGAGCTCAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGGAGATTCCAGGAGGGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACAGTCCACCTTGCCTTAC------TTCCACG----------------CCCCC-CGCTTTGTATAGCAATATGTTAATATGCTTAATTCAATTCCAGAAAATACCACTAGAGGCATTTCTTGGAGGCTTTTAT-CAGGGGCAAC---------TTTTTTTTTTTTTTA---------ATTAAACA--GGTAATAAAAGG--------AAACAGGAAAGTGTATTCTTTTAGCCCATGCGCCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACACACAAAGAATATTTACAATCCTCATGTATAATTTAGGTATCTAAAAAGGCAGATGTGCCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGTTT s panTro4.chr17 66150604 1201 - 82630442 GAGATTTATCACGTAATTAATTTTTAGCTCTTTTCAGA--AAGATTGTTCACTATACATTTAGCCCTGATGTGATAAGCTGTGACAAAGATTCA---TTTTATTCCGGAAGATAAAATGTTCATATTTTGTATGTAATTGTATT---AAACATTAAAAATAGCATGATTTAAGGTCATCCTATTGTACAGTCAGGTACTCCAGCACTAAAGGTAGATGAAAGA-------ATTTTTATAGATGTAACATTTTAGCCTAATTTGCTTTACAACGTCCATTTGGACCTACCTAACATAGATAACCTCTTG----ATTTATCTTGAAGCT-AAACACAGA-GTAG------GAAACACAAGCATCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTCTGTAATATGCACTGTAGTCGCGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCACTTCAAGTTTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCTGTGAGATCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCCCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCGTCCCGAGGCGCTGCAT---------------------GCCCACTGTACTGACTACAGGGGCCTGCAAGGAGGAGCTCAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGGAGATTCCAGGAGCGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACAGTCCACCTTGCCTTAC------CTCCACG----------------CCCCC-CGCTTTGTATAGCAATATGTTAATATGCTTAATTCAATTCCAGAAAATACCACTAGAGGCATTTCTTGGAGGCTTTTAT-CAGGGGCAAC----ttttttttttttttttttta---------attaaaCA--GGTAACAAAAGG--------AAACAGGAAGGTGTATTCTTTTAGCCCATGAGCCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACACGTAAAGAATATTTACAATCCTCATGTATAATTTAGGTATCTAAAAAGGCAGATGTGCCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24682449 1218 - 73212453 GAGATTTATCGCATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGTTCACTATACATTTAGCCCTGATGTGGTAAGCTGTGACAAAGATTTA---TTTTATTCTGGAGGATAAAATGTTCATATTTTGTAAGTAATTATATT---AAACATTAAAAATAGCATGATTGAAGGTCATCCTATTATGCAGTCAGGTACTCCAGCACTAAAGGTAGATGAAAGA-------ATTTTTACAGATGTAACATTTTAGCCTAATTTGCTTTACAACGTCCGTTTGGACCTACCTAACATAGATAACCTCTTG----ATTTATCTTGAAGCT-AAACACAGA-CTAG------GAAACACAAGCATCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTCTGTAATATGCACTGTAGTCGCGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCACTTCAAGTCTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCTGGTGAGATCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCCCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCGTCCCGAGGCGCTGCAT---------------------GCCCACTGTACTGACTACAGGGGCCTGCAAAGAGGAGCTCAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGGAGATTCCAGGAGGGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAATCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACAGTCCACCTTGCCTTAC------TTCCACGCCC------------CCCCCC-CCCTTTGTATAGCAATATGTTAATATGCTTAATTCAATTCCAGAAAATACCACTAGAGGCATTTCTTGGAGGCTTTTAT-CAGGGGCAACtttttttttttttttttttttttAATTTAATTTATTAAACA--GGTAACAAAAGG--------AAACAGGAAGGTGTATTCTTTTAGCCCATGCACCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACACATAAAGAATATTTACAATCCTCCTGTATAATTTAGGTATCTAAAAAGGCAGATGTGCCTACATAACTGAGAGTCACAATGGAGATAAAGGACAATGCTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47902052 1212 - 81552678 GAGATTTATCACATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGCTCACTATACATTTAGCCCTGATGTGATAAGCTGTGACAAAGATTTA---TTTTATTCCGGAGGATAAAATGGTCGTATTTTGTATGTAATTATATT---AAACATTAAAAATAGCATGATTTAAGGTCATCCTATTATACAGTCAGGTACTCCAGCACTAAAGGTAGATGAAAGA-------ATTTTTATAGATGTAACATTTTAGCCTAATTTGCTTTACAACGTCCATTTGGACCTACCTAACATAGATAACCTCTTG----ATTTATCTTGAAGCT-AAACACAGA-CTAG------GAAACACAAGCATCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTCCGTAATATGCACTGTAGTCGCGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCATTTCAAGTTTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCGGTGAGATTGCTCCCATGGCTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCCCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCGTCCCGAGGCGCTGCAT---------------------GCCCACTGTACTGACTACAGGGGCCTGCAAGGAGGAGCTCAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGGAGATTCCAGGAGGGAGCACCTGTAGCTTCAGAATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACAGTCCACCTTGCCTTAC------TTCCACAcctcccccccccccgcccccc-gccTTTGTATAGCAATATGTTAATATGCTTAATTCAATTCCAGAAAATACCACTGGAGGCATTTCTTGGAGGCTTTTAT-CAGGGGCAAC---------TTTTTTTTTTTTTTT---------CTTAAACA--GGTAACAAAAGG--------AAACAGGAAGGTGTATTCTTTTAGCCCATGCACCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACATATAAAGAATATTTACAATCCTCATGTATAATTTAGGTATCTAAAAAGGCAGATGTGCCTACATAACTGGAAGTCACAATGGAGATAAAGGACAATGCTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53015183 1181 + 80904711 GAGATTTATCACATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGCTCACTATACATTTAGCCCTGATGTGGTAAGCTGTGACAAAGATTTA---TTTTATTCCGGAGGATAAAATGTTCatattttgtatataattatatt---aaacattaaaaataGCATGATTTAAGGTCATCCTATTATACAGT--------------CTAAAGGTAGATGAAAGA-------ATTTTTGTAGATGTAACATTTTAGCCTAATTGTCTTTACAACGTCCATTTGGACCTGCCTAACATAGATAACCTCTTG----ATTTAACTTTCAGTT-AAACACAGA-CTAG------GAAACACAGGCGTCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTTTGTAATACGCGCTGTAGTCACGACTAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCACTTCAAGTCTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCGGTGAGGTCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCTCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCATCCCGAGGCGCTGCGT---------------------GCCCACTGTACTGACTACAGAGGCCTGCAAGGAGTTGCTGAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGCAGATTCCAGGAGGGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACGGTCCACCTTGCCTTGC------TTCCACG----------------CCCCC-CCCTTTGTATAACAATATGTTAATATGTTTAATTCAATTCCAGAAAATAGCACTAGAGGCATTTATTGGAGGCTTTTAT-CAGGGGCAAC----------TTTTTTTTTTTTTA---------ATTAAACA--GGTAACAAAAGG--------AAACAGGAAGGTGTGTTCTTTTAGCCCGTGCACCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACACATAAAGAATATTTATAATCCTCATGTATAATTTAGGTATGTAAAAAGGCAGATGTGCCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGGTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52537885 1183 + 80997621 GAGATTTATCACATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGCTCACTATACATTTAGCCCTGATGTGGTAAGCTGTGACAAAGATTTA---TTTTATTCCGGAGGATAAAATGTTCATATTTTGTATATAATTATATT---AAACATTAAAAATAGCATGATTTAAGGTCATCCTATTATACAGT--------------CTAAAGGTAGATGAAAGA-------ATTTTTGTAGATGTAACATTTTAGCCTAATTGTCTTTACAACGTCCATTTGGACCTGCCTAACATAGATAACCTCTTG----ATTTAACTTTCAGTT-AAACACAGA-CTAG------GAAACACAGGCGTCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTTTGTAATACGCGCTGTAGTCACGACCAGCTCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCACTTCAAGTCTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCGGTGAGGTCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCTCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCATCCCGAGGCGCTGCGT---------------------GCCCACTGTACTGACTACAGAGGCCTGCAAGGAGTTGCTGAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGCAGATTCCAGGAGGGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACGGTCCACCTTGCCTTGC------TTCCACGCC--------------CCCCC-CCCTTTGTATAACAATATGTTAATATGTTTAATTCAATTCCAGAAAATAGCACTAGAGGCATTTATTGGAGGCTTTTAT-CAGGGGCAAC----------TTTTTTTTTTTTTA---------ATTAAACA--GGTAACAAAAGG--------AAACAGGAAGGTGTGTTCTTTTAGCCCGTGCACCTGCCTTGGCAGG-----TTTTTTTCATCCTAACATACACATAAAGAATATTTATAATCCTCATGTATAATTTAGGTATGTAAAAAGGCAGATGTGCCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47582860 1183 + 74645514 GAGATTTATCACATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGCTCACTATACATTTAGCCCTGATGTGGTAAGCTGTgacaaagattta---ttttattccggaggataaaatgttcatattttgtatataattttatt---aaacattaaaaatagcatGATTTAAGGTCATCCTGTTATACAGT--------------CTAAAGGTAGATGAAAGA-------ATTTTTGTAGATGTAACATTTTAGCCTAATTGGCTTTACAACGTCCATTTGGACCTGCCTAACATAGATAACCTCTTG----ATTTAACTTTCAGCT-AAACACAGA-CTAG------GAAACACAGGCGTCATCTCTCACCTGATTTCGCAGTTCTTCAATTTGTTTGTAATACGCGCTGTAGTCACGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGTACTTCAAGTCTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCGGTGAGGTCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCTCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCATCCCGAGGCGCTGCGT---------------------GCCCACTGTACTGACTACAGAGGCCTGCAAGGAGTTGCTGAGGCTTCTGTGGAAGCTTCTGCGACTGAaatccattgcagattccaggaggGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACGGTCCACCTTGCCTTGC------TTCCACG----------------ccccc-cccTTTGTATAACAATATGTTAATATGTTTAATTCAATTCCAGAAAATAGCACTAGAGGCATTTATTGGAGGCTTTTAT-CAggggcaac--------ttttttttttttttta---------attaaaca--ggTAACAAAAGG--------AAACAGGAAGGTGTGTTCTTTTAGCCCATGCACCTGCCTTGGCAGG-----tttttttCATCCTAACATACacataaagaatatttataatcCTCATGTATAATTTAGGTATGTAAAAAGGCAGATGTGCCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGGTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9849233 1192 - 75148670 GAGATTTATCACATAATTAATTTTTAGCTCTTTTCAGA--AAGATTGCT-ACTATACATTTAGCCCTGATGTGGTAAGCTGTGACAAAGATTTA---TTACATTCCGGAGGATAAAATGTTCATATTTTGTATATAATTATATT---CAACATTAAAAATAGCATGATTTAAGGTCATCCTATTATACAGT--------------CTAAAGGTAGATGAAAGA-------ATTTTTGTAGATGTAACATTTTAGCCTAATTTGCTTTATAACGTCCATTTGGACCTGCCTAACATAGATAACCTCTTG----ATTTAACTTTCAGCT-AAACACAGA-CTAGGAAACAGAAACACAGGCGTCATCTCTCACCTGATTTCGCAGCTCTTCAATTTGTTTGTAATACGCGCTGTAGTCACGACCAGCCCTCGGGGCGTTGGTTTCGTACCACTGCTTGATCTGCACTTCAAGTCTGGAGTTGGACTGCTCCAGGGTCCGCACCTTTTCTAGGTAGCTCGCTAGACGGTCATTTAGGTTCTGCATGGCCATTTTCTCATTGCCAACAAACAGGTCCCCGCCGCCGGTGAGGTCGCTCCCATAGTTCACCGTGTGTCTGGA---GTTGGAGATGCGGATGCCTCGGCCTCCAGCACCCCCATAAACGCTGGGTGTCATCCCGAGGCGCTGCGT---------------------GCCCACTGTACTGACTACAGAGGCCTGCAAGGAGTTGCTGAGGCTTCTGTGGAAGCTTCTGCGACTGAAATCCATTGGAGATTCCAGGAGGGAGCACCTGTAGCTTCAGGATGGTTGGGGCAGA----GTGTGTCTCATGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGTGAGAAACTCCTCC-------------TCTGCTGACATGTCAC--TAGGATTGGCACCACAGTCCACCTTGCCTTGC------TTCCACG----------------CCCCC-CCCTTTGTATAACAATATGTTAATATGTTTAATTCAATTCCAGAAAATAGCACTAGAGGCATTTATTGGAGGCTTTTAT-CAGGGGCAAC----ttttttttttttttttttAA---------ATTAAACA--GGTAACAAAAGG--------AAACAGGAAGGTGTGTTCTTTTAGCCCGTGCACCTGCCTTGGCAGG-----ATTTTTTCATCCTAACATACACATAAAGAATATTTATAATCCTCATGTATAATTTAGGCATGTAAAAAGGCAGATGTACCTACATAACTGAAAGTCACAATGGAGATAAAGGACAATGGTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112694870 1192 + 159171411 ----TTTACCACATCATTAATTTTTAGCTCTTTTCAGA--AAGATGGTTCACTATACATTTAGCCCTGATGTGGTAAGCTGTGACAAGGATACAGACTGTAAGACTGGAGGATAAAATGTTCATATTTTGTATGTAATTATATT---AAACGTTAAAAATAGTATGATTTAAAGTCATCCTATTATACTGTTAGGTACTCCAGCACTAAAGGTAGATGAGAGC-------ATTTTTATAGATGTAACTTTGTAGCCTAATTTGCTGTACAATGTCCATTTGGACCTACCTAACGTAGACAGCCTCTTG----GTTTATCTTGCAACT-AAACACAGA-TTAG------GAAACACAGGTGCCGTCTCTCACCTGATTTCGAAGCTCTTCAATCTGTCTGTAATACGCACTGTAGTCACGACCACCACTCGGGGCGTTGGTTTGGTGCCACTGCTTGATCTGCACTTCAAGCTTGGAGTTGGACTGCTCCAGGGCCCGCACCTTCTCTAGGTAACTTGCTAGACGGTCATTTAGGTTCTGCATGGTCATTTTCTCATTGCCAACAAACAGGTCCCCGCTGCCGATGAGATGGCTCCCATAGCTCACCATGTGTCTGGAGGTGGTGGAGATGCGGGTGCCCCAGCCTCCAGCACCCCCATAAACGCTGGGCGCTATCCTGAGGTGCTGCAG---------------------G---------CTGACTGCAGAGCTCTGCAAGGGGGAACTCAGGGTTCGGCAGAAGCCTCTGCGGCTGACATCCTTTGGTGTTACCGGGTGGGAGCAC--ATAGCTTCAGGATGGTTGGGGCAGA----GTCTGTCTCGTGGAGGGTGTTGAGCTAGCCTTTTATGAAGTCCACAGGCAAGAAA---CTCC-------------TCTGCTGACACGTCAC--TAGGATTGGCACCACAGTCCACTTTGCCTTGC------TTCCACA----------------CCTCCACCCTTTGTATAGCAATATGTTAATATGTTTAATTCAATTCCAGAAAATACCACTAGAGGCATTTCTTGGAGGCTTTTCT-CAAGGGAGAC------------TTTTTTAAAAAA---------ATTAAACAGTGGTAACAAAAGGAAGCAGAAAAACAGGGAGACGTATTCTTTTAGCCCATGCACCTGCCTTGGCAGG-----TTTTCTTTATCCTAACCGATACATAAAGAATATTTACAATCCTCATGTATAATTTAGGTATCTAAAAAGACAGATGTGTCTACATAACTGAAAGTCACACTGGTGATGAAGGACAATGGTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99437371 1182 + 122082543 ---------TATAGAAACCA-TTGGAGGTCTTTGAAAAATAAGATTATCCACAATGA----AGACCTTATATTGTAAGCCATAACAAAGATTTGAACTGCAATTTTGGATGATAAAATGATCATATTTTATATATAATTAGTTG---AAGTTTTAGAAAAAATGTGAGTTAGACTCATCCTGTT-TACAGATAC-----------CACATGATAAAATACATT-------TTTTTTTCAATTAT-ACATTTCAACCTAATCTGCTTCA-----TGTGTTCGAATTCACCTAGCATACAT---CTCTCA----ATCCATTAGGCAACT-AAACAGTGAGGTAG------AAATTACAGGCTTCATGGCTCACCTGATTTTGCAGCTCTTTAATCTGTGCGTAGTAGGAGCTATAGTCTCGGATGGTGCTCGGCGCGTTGGTTTCGTACCACTGCTTGATCTGGGCTTCAAGTCTGGAATTGGATTGCTCCAGGGAGCGCACTTTTTCTAGGTAGTTTGCCAATCTGTCGTTCAGGTTCTGCATTGCCAGTTTCCCATTGCCCCCAAACAGGTCCGATCCGTTGGAGAGATCACCCCCGTAGCTCATTACGGCTTTGGA---GACAGAGATGCGAGTGCCATGGCCTCCAGCCCCACCATAGACGCTGGGTGCAGCCCCCAGACGCTGCACAGTCCCCTTCCTATACAGCGAGCCACTCATGCTGAGTGCTGGGCCTTGTGAGGAGGAACTCAGACTTCGGTGAAAACTTTGACGACTGAAATCCATCTGGGATGTAGGGAGGCAACGCCTGTAGCCT--GGAC--TTGGAGCACAGCCTGTCTGTCTCG-GGCTGCTGTGGAGATGACCTTTTATAGAGTTCA------AGAGACTCCTCC-------------TCTGCTGCCGTGTCACCTCAGGAATGA---CACAGTCCACCTT-CCTGTC------TCCCCTT----------------CCCCC-TCTTTTGTACGGCAATACGT--------TTCATTCCATTCCAGAAATTTCTACCAGAGGCACTTTTTAAAGGCTTTCCTGTGGGGGTGGT----GGGAGTGGAGGTTTCTTTTT---------AATAAACAGAGATAACAAAAAG--------GACGAGGAAGGGGTGTCCTTTCAGGTCTTGCACCTGCCCTGGCAGGTTTTTTTTTTTTCATCCT-GTATACAAATAAAGAATATTTACAATCTATATGAATAATTCAGGCATCGAACAAGACAGCTGTGGGAACATAA-TATAAGTCACACTGGTGAGAAAAGACAATGGCT i mm10.chr11 C 0 C 0 s canFam3.chr9 39264789 1218 - 61074082 CAGATTTATCAT-CATTGAAATTTCAGCTCTTCTCAGAAAAAAAAAGTTTACTATTCACTTAGACTTGTCCTGGTAAACTGACAAAAATATGGA---TTTTATT---------------TTCATATATTCTATGTAATTAGATTTTAAAAAGTGAAAAAAAATATG---TACAGTCATCCAATTATGTAGTCAGCTACCCCAGCACTAAAAGTAGATGATAGAATGCACCATTTTTTTAGATATAGCATTTCAGCCTAATT-GCTTTATAACATCCATTTGGACCCACCTAACATATATGCCCTTTTGGTATATATATCCTGCAGCTCAAAGGTGGA-GTAG------AAAACACAGGCGTCATCCCTTACCTGCTTTTGCAGCTCTTCCATTTGTTTGTAATATGCACTGTAGTCCT---TGGCGCTGGGCGTGTTTGTTTTATACCACTCCTTGATCAGCGATTCAAGGTTGGAGTTGGACTTTTCCAGGGACTGCACTTTTGCTAGGTAGCTTGCTAGGCGGTCATTTAGGTTCTGCATGGTTGTCTTCTCATTACCAACAAACAGGTTTCCTTTG---GTGTGATCACCCCCATAGCCCCTCATATGCCTGGA---GGTTGAGATGCGGATGCCCTGACCTCCAGCTCCCCCATAGACGCTGGGTGCAGCCCCAAAGTACTGCATGTCCTCCTTCCTATACATGGAGCCACTCATGCTGAGTGCAGAGGTCTGTGGGGAGGAACTCAAGCCTCTGTGGAAGTTTCTGCGACTGAATTCCATTGGGGATTCTAGGAGGAAGCACCTGTAGCTTCTGGATGGCTGGAGCAGA----GTCTGAGTCTCAGTGGTGGATGAGCTGACCTTTTATAGAGTTCGTAGGAAAGAAACGCCTCCTCTGCTGACCTCTTCTGCTGACATCTCGCTTTAGGATTGACACCACTGTCCACCGCGCCTTGCTTTGTTTTTTTCT----------------TTTTC-CCCTTTGTACAGCGATCTGT--------TTAGTTTCATTCCAGAAATTATCACTAGAGGCATTTCTTAGAGGCTTTTCT-CAGGGGCGAT---------------TCCTTTTTT---------TTTAAACAGAGGCAACAAAAGG--------AAAC-GGAAGATGTATTCTTTTAGCCTTTGCACCTGCCTTGACAGA---TTTTTTTTTCATCCTAATATACACAAGAAGAATATTTGCAAACATTGTGAATAATTTAGGTACCTAAAAAGACAGATGTGGGTACATAATAGTAAGTTACACTGGTGATCAAGAACAATGTTT i canFam3.chr9 C 0 I 783 a score=54837.000000 s hg38.chr17_JH159146v1_alt 34915 19 + 278131 GATTTGTATTGAGGAGTTG s panTro4.chr17 66151805 19 - 82630442 GATTTGTATTGAGGAGTTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24683667 19 - 73212453 TATTTGCATTGAGGAGTTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47903264 19 - 81552678 TATTTGTATTGAGGAGCTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53016364 19 + 80904711 TATTTGTATTGAGGAGTTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52539068 19 + 80997621 TATTTGTATTGAGGAGTTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47584043 19 + 74645514 TATTTGTATTGAGGAATTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9850425 19 - 75148670 TATTTGTATTGAGGAGTTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112696062 19 + 159171411 TATTTGTATTGAGGAGGTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99438553 15 + 122082543 TGTTCAAAT----GATTTT i mm10.chr11 C 0 C 0 e canFam3.chr9 39266007 783 - 61074082 I a score=96653.000000 s hg38.chr17_JH159146v1_alt 34934 24 + 278131 CTCTTCAGAACCTCTGTTTCATGC s panTro4.chr17 66151824 24 - 82630442 CTCTTCAGAACCTCTGTTTCATGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24683686 24 - 73212453 CTCTTCAGAACCTCTGTTTCACGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47903283 24 - 81552678 CTCTTCAGAACGTCTGTTTCATGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53016383 24 + 80904711 CTCTTCAGAACCTCTGTTTCATGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52539087 24 + 80997621 CTCTTCAGAACTTCTGTTTCATGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47584062 24 + 74645514 CTCTTCAGAACCTCTGTTTCATGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9850444 24 - 75148670 CTCTTCAGAACCTCTGTTTCATGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112696081 24 + 159171411 CTCTTCAGAACTGATGTTTTGTGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99438568 21 + 122082543 CTTTTAAAAA---ATGTTTTATGC i mm10.chr11 C 0 C 0 s canFam3.chr9 39266790 24 - 61074082 CTCTTCAGAATCTCTGTTTTATGC i canFam3.chr9 I 783 I 179 a score=261118.000000 s hg38.chr17_JH159146v1_alt 34958 72 + 278131 TTT-----GCTTGTGTTTGGCTTTTAAGTTTATTGTGTTTTGGACATCTTATTTTATAAGACTATTAAAATATTTTG s panTro4.chr17 66151848 72 - 82630442 TTT-----GCTTGTGTTTGGCTTTTAAGTTTATTGTGTTTTGGACAACTTATTTTATACGACTATTAAAATATTTTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24683710 72 - 73212453 TTT-----GCTTGCGTTTGGCTTTTAAGTTTACTGTGTTTTGGACATCTTATTTTATAAGACTATTAAAATATTTTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47903307 72 - 81552678 TTT-----GCTTGTGTTTGGCTTTTAAGGTTATTGTGTTTTGGACATCTTATTTTGTAAGACTATTAAAATATTTTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53016407 72 + 80904711 TTT-----ACTTGTGTTTGGCTTTTAAGTTTATTCTGTTTTGGACATCTTATTTTATAAGACTATTAATATATTTTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52539111 72 + 80997621 TTT-----ACTTGTGTTTGGCTTTTAAGTTTATTCTGTTTTGGACATCTTATTTTATAAGACTATTAATATATTTTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47584086 72 + 74645514 TTT-----ACTTGTGTTTGGCTTTTAAGTTTATTCTGTTTTGGACATCTTATTTTATAAgactattaatatattttg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9850468 72 - 75148670 TTT-----ACTTGTGTTTGGCTTTTAAGTTTATTCTATTTTGGACATCTTATTTTATAAGACTATTAATATATTTTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112696105 72 + 159171411 TTC-----AGTTGTTTTTGGCTTTTAAGTTTATTCTGGTTTGGACATCTTATTTTATAAGACTACTAAAATACTTTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99438589 75 + 122082543 TTCTTTAAATTTTTTTTTTACTTTTAAGTTTATCCTTGTTTAG--AATTTATATTTACAGTCTATTGAAATGTCTTG i mm10.chr11 C 0 I 193 s canFam3.chr9 39266993 72 - 61074082 TTT-----TTTTGGTTTTTGTTTTTAAGTTTATCTCTGTTTAGAGGTTATATTTTATAAAACGATTAAAATATTTTG i canFam3.chr9 I 179 C 0 a score=275163.000000 s hg38.chr17_JH159146v1_alt 35030 72 + 278131 TACAAACACAAAACCTCGAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT s panTro4.chr17 66151920 72 - 82630442 TACAAACACAAAACCTCGAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24683782 72 - 73212453 TACAAACACAAAACCTCGAATCCCTAAACTAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47903379 72 - 81552678 TACAAACACAAAACCTCGAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53016479 72 + 80904711 TACAGACACAAAACCTCAAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52539183 72 + 80997621 TACAGACACAAAACCTCAAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47584158 72 + 74645514 tacagACACAAAACCTCAAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9850540 72 - 75148670 TACAAACACAAAACCTCGAATCCCTAAACCAGGAATGAAACCATTGTACATTTGGAGATGTAGTTTGGGGAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112696177 72 + 159171411 TACAAACACAAAACTTTGAATACCTAAACCAGGAATGAAACCATTATACATTTGGAGATGTAGCTTGGGGAT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39267065 72 - 61074082 TACAAACAGAAAACCTCAAGTATTTAAAACAGGAATGAAACATTTATACATTTGGAGATGAAGTTTGGGGAA i canFam3.chr9 C 0 C 0 e mm10.chr11 99438664 193 + 122082543 I a score=190233.000000 s hg38.chr17_JH159146v1_alt 35102 53 + 278131 GTGAAT---TAAATGAATTTAGCTGAGTGATGGATTAGATGATTTGGGAGGTTATT s panTro4.chr17 66151992 53 - 82630442 GTGAAT---TAAATGAATTTAGCTGAGTGATGGATTAGATGATTTGGGAGGTTATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24683854 53 - 73212453 GTGAAT---TAAATGAATTTAGCTGAGTGATGGACTAGATGATTTGGGAGGTTATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47903451 53 - 81552678 GTGAAT---TAAATGAATTTAGCTGagtgatggactagatgatttgggaggttatt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53016551 53 + 80904711 ATGAAT---TAAATGAATTTAGCTGAATgatggactagatgatttgggaggttatt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52539255 53 + 80997621 ATGAAT---TAAATGAATTTAGTTGAATgatggactagatgatttgggaggttatt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47584230 53 + 74645514 ATGAAT---TAAATGAATTTAGCTGAGTGATGGACTAGATGATTTGggaggttatt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9850612 53 - 75148670 ATGAAT---TAAATGAATTTAGCTGagtgatggactagatgatttgggaggttatt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112696249 53 + 159171411 GTGAAT---TACATGAATTTAGGAGAGTAGTGGACTAGACGATTTGGGAGGTTATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99438857 56 + 122082543 GTGAATATGTAAATGATTATCGGTGGGCGGTGGGTCAGTTGATTTTGGAGTTTTTT i mm10.chr11 I 193 I 958 s canFam3.chr9 39267137 33 - 61074082 GTGAAT---TAAATGAATTT----------------AGGTGATTTTGAAGTT---- i canFam3.chr9 C 0 C 0 a score=404760.000000 s hg38.chr17_JH159146v1_alt 35155 116 + 278131 TTCTTTCTATTTCTAATGTTCTAT-GACTAAATATTGCATTTTAGGTTTCCAGTCACCACCT-GGCTTCAAGTCCTGTTACCAAGACACTTAGAATAAATCACACAGTGCTTTGTACC s panTro4.chr17 66152045 116 - 82630442 TTCTTTCTATTTCTAATGTTCTAT-GACTAAATATTGCATTTTAGGTTTCCAGTCACCGCCT-GGCTTCAAGTCCTGTTACCAAGACACTTAGAATAAATCACACAGTGCTTTGTACC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24683907 116 - 73212453 TTCTTTCTATTTCTAATGTTCCAT-GACTAAATATTGCATTTTAGGTTTCCAGTCACCGCCT-GACTTCAAGTCCTGTTACCAAGACACTTAGAATAAATCACACAGTGCTTTGTACC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47903504 116 - 81552678 ttctttctatttctaatgttctat-ggctAAATATTGCATTTTAGGTTTCCAGGCACCGCCT-GGCTTCAAGTCCTGTTACCAAGACACTTAGAATAAATCACACAGTGCTTTGTACC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53016604 116 + 80904711 ttctttctatttctaatgttctat-gACTAAATAATGCATTTTAGGTTTCTAGTCACTGCCT-GGCTTCAAGCCCTGTTACCAAGACACTTACAATAAATCGCACAGTGCTTTGCACC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52539308 116 + 80997621 ttctttctatttctaatgttctat-gACTAAATAATGCATTTTAGGTTTCTAGTCACTGCCT-GGCTTCAAGCCCTGTTACCAAGACACTTACAATAAATCGCACAGTGCTTTGCACC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47584283 116 + 74645514 ttctttctatttctaatgTTCTAT-GACTAAATAATGCATTTTAGGTTTCTAGTCACTGCCT-GGCTTCAAGCCCTGTTACCAAGACACTTACAATAAATCGCACAGTGCTTTGCACC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9850665 116 - 75148670 ttctttctatttctaatgttctat-gACTAAATAATGCATTTTAGGTTTCCAGTCACTGCCT-GGCTTCAAGCCCTGTTCCCAAGACACTTAGAATAAATCGCACAGTGCTTTGCACC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112696302 116 + 159171411 TTCTTTCTATTTTTAATGTTCTGT-GATTAAGTAATGCATTTTAGGTTTCCAGTCACTGCCT-GGCTTCAAGTCCTGTTACCAAGACACTTAGAATAAATCACACAGTGCTTTGCATC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39267170 116 - 61074082 TTACCCCCAATTCTAATGTTCTAGAGACTAGATAATTCATTTAAAGTTTTCAGTCACTGCCTGGGCTTTGGATCTTGTTCCCTGAAAAC--AGAATAAATAGCATAGTGCTGTGCACC i canFam3.chr9 C 0 C 0 e mm10.chr11 99438913 958 + 122082543 I a score=1147382.000000 s hg38.chr17_JH159146v1_alt 35271 331 + 278131 TGGCATGGTATC--AGGATGGGTCTCCT--CTTTTGTATGAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCTGAAGCTACTTACAGGTGCT-CCTTCTAAAGTCCCCAGTGGATTTCAGTTGCAGAAGCTTCCATGGAAGCCTGA--TCTTCCTTGTATGCCCCCATAATCACAGCGAGAGTGGCTGTTTATATAGGAAGGG-GTGCAGGCGGGGACTTGGGACTACACTCAGCTTCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGTGTGTGGACCTCTA----------GACACAT----------GGGCATGATCTCATCGGTGG---GAATCTGATTGTAAGCAA------- s panTro4.chr17 66152161 331 - 82630442 TGGCATGGTATC--AGGATGGGTCTCCT--CTTTTGTATGAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCTGAAGCTACTTACAGGTGCT-CCTTCTAAAGTCCCCAGTGGATTTCAGTTGCAGAAGCTTCCATGGAAGCCTGA--TCTTCCTTGTATGCCCCCACAATCACAGCGAGAGTGGCTGTATATATAGGAAGGG-GTGCAGGCGGGGACTTGGGACTACACTCAGCTTCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGTGTGTGGACCTCTA----------GACACAT----------GGGCATGATCTCATCGGTGG---GAATCTGATTGTAAGCAA------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24684023 331 - 73212453 TGGCATGGTATC--AGGATGGGTTTCCT--CTTTTGTATGAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCTCA--TCCATCCTGAAGCTACTTACAAGTGCT-CCTTCTAGAATCCCCAGTGGATTTCAGTTGTAGAAGCTTCCATGGAAGCCTGA--TCTTCCTTGTATGGCCCCACAATCACAGAACGAGTGGCTGTATATATACGAAGGG-GCGCAGGTGGGGACTTGGGACTACACTCAGCTTCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGTGTGTGGACCTCCA----------GACACAT----------GGGCATGATCTCATCGGTGG---GAATCTGATTGTAAGCAC------- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47903620 325 - 81552678 TGGCATGGTATC--AGGATGGGTCTCCT--CTTTTGTATGAGGCCAGCTTAACATCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCTGAAGCTATTTACAGGTGTT-CTTTCTAGAATCCCCAGTGGATTTCAGTTGCAGAAGCTTCCACGGAACCCTGA--GCTTCCTTGTATTTCCCCACAATCACAGCACGA------GTATATATAGGAAGGG-TCGCAGGCAGGGACTTGGGACTACACTCAGCTTCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGTGTGTGGACCTCTA----------GACACAT----------GGGCATGATCTCACGGGTGG---GAATCTGGTTGTAAGCAC------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53016720 331 + 80904711 TGGCATGGTACC--AGGATGGGTCTCCT--CTTTTGTATAAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCGGAATCTACTTACAGGTGCT-CCTTCTAGAATCCCCAGTGGATTTTAATTGCAGAAGCTTCCACGGAAGCCTGA--TCTTCCTTGTATGTCCCCACAATCACAGCAGGAGTGGCTGTATGTATAGGAAGTG-GGGCAGGCGGGGCCTTGGGACTACACTCAGCATCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGCGTGTGGACCTCCA----------GACACAT----------GGGCGTGATCTCACCAGTGG---GAATCTGATTGTAAGCAC------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52539424 331 + 80997621 TGGCATGGTACC--AGGATGGGTCTCCT--CTTTTGTATAAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCGGAATCTACTTACAGGTGCT-CCTTCTAGAATCCCCAGTGGATTTTAATTGCAGAAGCTTCCACGGAAGCCTGA--TCTTCCTTGTATGTCCCCACAATCACAGCAGGAGTGGCTGTGTGTATAGGAAGTG-GGGCAGGCGGGGCCTTGGGACTACACTCAGCATCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGCGTGTGGACCTCCA----------GACACAT----------GGGCGTGATCTCACCAGTGG---GAATCTGATTGTAAGCAC------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47584399 331 + 74645514 TGGTATGGTACC--AGGATGGGTCTCCT--CTTTTGTATAAGGCCAGCTTAACACCCACCATG---AGACAGACT--CTGCCCCA--TCCATCCGGAATCTACTTACAGGTGCT-CCTTCTAGAATCCCCAGTGGATTTTAATTGCAGAAGCTTCCACGGAAGCCTGA--TCTTCCTTGTATGTCCCCACAATCACAGCAGGAGTGGCTGTATGTATAGGAAGTG-GGGCAGGCGGGGCCTTGGGACTACACTCAGCATCCA-GGGTTGGGCTGGAGGCAGCTG--CTTGCGTGTGGACCTCCA----------GACACAT----------GGGCGTGATCTCACCAGTGG---GAATCTGATTGTAAGCAC------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9850781 331 - 75148670 AGGCATGGTACC--AGGATGGGTCTCCT--CTTTTGTATAAGGCCAGCTTAACACCCACCATG---AGACAGACT--TTGCCCCA--TCCATCTGGAATCTACTTACAGGTGCT-CCTTCTAGAATCCCCAGTGGCTTTTAATTGCAGAAGCTTCCACGGAAGCCTGA--TCTTCCTTGTATGTCCCCACAATCACAGCAGGAGTGGCTGTATGTATAGGAAGTG-GGGCAGGGGGGGCCTTGGGACTACACTCAGCAACCA-GGGTTGGGCTGGAGGCAGCTG--CTTGCGTGTGGACCTCCA----------GACACAT----------GGGCGTGATCTCACCGGTGG---GAATCTGATTGTAAGCAC------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112696418 330 + 159171411 TGGCATGGTACA--AGGACGGGTCTCCT--CCTTAGAATAAGGCCAGCGTAACACCCACCGTG---AGAGAGACT--C-ATGCAG--TCCATCCTGAAGCTACTCACAAGTGCT-CATTCTAGAATCCCTAGTGGATTTCAGTTGCAGAAGCTTCAGCGGATGCCTGA--TCTTCCTTGCATGTCTCCACAATCACCCCACAAGTGGCTGTATGTACAGGCAGGG-GGGCAGGCGGGGCCTTGGGACTACCCTCAGCTTCCA-GGGTTGGGCTGGAGGCAGTTG--CTTGCATGTGGACCTCCA----------GACACAT----------GGGGATGATCTCACCAGGGG---GCATCTGATTGTAAGCAC------- i calJac3.chr5 C 0 C 0 s mm10.chr11 22644327 346 - 122082543 TGACACGGCAGCAGAGGAGGAGTCTCTTGAACTCTATAAAAGGTCATCTCCACAGCAGCCCGAGACAGACAGGCT--GTGCTCCAAGTCCAGGC----------TACAGGCGTTGCCTCCCTACATCCCAGATGGATTTCAGTCGTCAAAGTTTTCACCGAAGTCTGAGTTCCTCCTCACAAGGCCCAGCACTCA--GCATGAGTGGCTCGCTGTATAGGAAGGG-GACTGTGCAGCGTCTGGGGGCTGCACCCAGCGTCTA-TGGTGGGGCTGGAGGCCATGGCACTCGCATCTCTGTCTCCAAAGCCGTAATGAGCTAC----------GGGGGTGATCTCTCCAACGGATCGGACCTGTTTGGGGGCAA------- i mm10.chr11 n 958 T 87594 s canFam3.chr9 39267286 345 - 61074082 TGACCTGGTGCA--TGGA-GTCTCTCTC--CTCTGTTATAAGGTCAGCTCAGCACCCACCGTG---AGACAGATTGCTTGCTCCA--TCCATTCTGAAAC----TACAGCTGCTCCCTGCTAGAATCTCCAATGGATTTCACTGGCAGTGGTTTTCATGGAAGCCTCA--TCTTTCCTACGGGGCCGCAGGCTCACAGCATTAGGGGAGCTATGTATAGTCAGGGTGTGTGTGTAGTGCCCTGGGACTACACCCAGCCTCTGCTGGTTGGGCTGGAAGCCTCTG--CATGTGTGTAGACATCCA----------GACACATGGTGAACTCCGGGTGTGGTCTCACCAGTGG---GGCTCTGCT---AAACATTATTGAG i canFam3.chr9 C 0 C 0 a score=1007344.000000 s hg38.chr17_JH159146v1_alt 35602 379 + 278131 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACTTCCCATGAAGCATGTAAATCACTTCCTTAGTTAATTAGATAATCACTAATTAATATAATTAGATAATC----AGTTAATCACTTCCAAGTTAATTAG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAATT---------AAGCAAGCAAGTAAAT-------GC-AA---------AAAAAA--------------------------------------------TTGGAATTTAATTGTCTTATTTTAGTGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAGTCACTTAAAAAAAATTTTTTTTGAGTTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA s panTro4.chr17 66152492 383 - 82630442 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACTTCCCATGAAGCATGTAAATCACTTCCttagttaattagataatcactaattaatataattagataatcacttagttaatcacttccaagttaattaG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAATT---------AAGCAAGCAAGTAAAT-------GC-GA---------AAAGAA--------------------------------------------TTGGAATTTAATTGTCTTATTTTAGTGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAGTCACTTAAAAAAAATTTTTTTTGAGTTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24684354 388 - 73212453 CCAATAAATGCCTGAGTCACTTTCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACCTCCCATGAAGCATGTAAATCACTTCCttagttaattagataatcactaattaatctaattggataatcacttagttaatcacttccaagttaattaG---AAGGGATTGGAAAAGTCACTAAAAACAACTAATTAATTGTCATCCTGATACTTCAATGGAATTGAGATTTGTATATAATTAAAGC----AAGCAAGCAAGTAAAT-------GCAAA---------AAAAAA--------------------------------------------TTGGAATTTACTTGTCTTATTTTAGTGGCTTATTTGTTGTTGCTATTGTTCTGAAAGCCAGTCACTT-AAAACACTTTTTTTTGAGTTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47903945 387 - 81552678 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACGCCTCCCATGAAGCATGTAAATCACTTCCttagttaattcgataatcactaattaatctaattagataatcatttagttaatcacttccaagttaattaG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAATTAAACC----AAGCAAGCAAGTAAAT-------GC-AA---------AAACAA--------------------------------------------TTGGAATTTACTTGTCTTATTTTAGCGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAGTCACTT-AAAAAACATTTTTTTGAGTTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53017051 336 + 80904711 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACCTCCCATGAAGCAAGTAAATCACTTCCTTAAT------------------------------------------------------CAAGTTAATTAG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAATTAAAGC----AAGCAAGCAAGTAAAT-------GC-AAAAA-----TAAAAAA--------------------------------------------TTGGAATTTACTTGTCTTATTTTAGAGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAATCACTT--AAAAATTTTTTTTTGAGCTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52539755 336 + 80997621 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACCTCCCATGAAGCAAGTAAATCACTTCCTTAAT------------------------------------------------------CAAGTTAACTAG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAATTAAAGC----AAGCAAGCAAGTAAAT-------GC-AAAAA-----TAAAAAA--------------------------------------------TTGGAATTTACTTGTCTTATTTTAGAGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAATCACTT--AAAAAATTTTTTTTGAGCTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47584730 336 + 74645514 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACCTCCCATGAAGCAAGTAAATCACTTCCTTAAT------------------------------------------------------CAAGTTAATTAG---AAGGGATTGGAAAAGTCACTAAAAACACCTAATTAATTGTCATCCTGATACTTTAATGGAATTGAGATTTGTATATAAttaaagc----aagcaagcaagtaaac-------gc-aaaaa-----taaaaaa--------------------------------------------ttggaatttACTTGTCTTATTTTAGAGGCttatttgttgttgctgttgttctgaAAGccaatcactt--aaaaaaatttttttgagcttttagaaaccagtggcttttttact--tttga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9851112 336 - 75148670 CCAATAAATGCCTGAGTCACTTGCTTCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCATACCTCCCATGAAGCAAGTAAATCACTTCCTTAAT------------------------------------------------------CAAGTTAATTAG---AAGGGATTGGAAAAGTCACTAAAAACATCTAATGAATTGTCATCCCGATACTTTAATGGAATTGAGATTTGTATATAATT-AAGC----AAGCAAGCAAGTAAAT-------GC-AAAAA-----TAAAAAA--------------------------------------------TTGGAATTTACTTGTCTTATTTTAGAGGCTTATTTGTTGTTGCTGTTGTTCTGAAAGCCAATCACTT-AAAAAAATTTTTTTTGAGCTTTTAGAAACCAGTGGCTTTTTTACT--TTTGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112696748 322 + 159171411 CCAATAAACGCCTGATTCACTTGCTCCCCTTCA-----TTCAAACCCCCTGGCT-GAGAATTCACACCTCCCATGAAGCATTTAAATCACATCCTTAAT------------------------------------------------------CAAGTTAAGTAG---AAGGGTTGAAAAAAGTCACTAAAAAC-------TAATTGTCATCCTGGTACTTTAATGGAGTTGGGATTTGTGTATGATTAAAGC----AAGCAAGCAAGTAAAC-------AC-AC---------AACAAA--------------------------------------------TTGTAATTTGCTTGTTTTGTTTTAGTGGATTATTTGTTGTTGCTGTTGTTTGGAAAGCCAGTTACTT----AAATTTGTTTTTGAGTTTTTAGATGCCAGTGGCTTTTTTACT--TTTA- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39267631 370 - 61074082 CCAAATGGAATCT-ATTCATTTGTTCTTCCTCAAATTGTTCAAATCCCCTGGCCAAAAAATTCAC--------TGAAACATTTGAATCGTTTCCTTAAT------------------------------------------------------CAGAATAAATATTTCAAAGGATTGGAGAAGTTACAGAAAACACCTCATTAATTTTCATTCTGGTACTTTAA-----TTGAGGTTTATATATGATAAaagcaaataagcaagcaagcaaacaaccaaAGC-AGAAGAAATCTAAAAAAAAAAGACATTCATTCAGAATCTTTGTACATTCTTTCTGAGGAATTTGGAATTTACTT------TTTTAGTGGCCCA--AACTGTTGTTCTTCCACTGAAAACCAATGGCTT-------TTTACTTTTGAGATT----------GAGGttttttttgttatttaa i canFam3.chr9 C 0 C 0 e mm10.chr11 22644673 87594 - 122082543 T a score=1883300.000000 s hg38.chr17_JH159146v1_alt 35981 529 + 278131 GTTTAAATTTCTTTTACACACAACTTTCTTCTAAAATAAGGTCAGATCATATTATTTCTCTCTTATAAACAGTATACTTTAAAATAATACATTGTGTTTGATTTTATCTTAGTTATA------------------TCACAGAAATAAAAATTGAGATAAAATGGAATCTAT-TTTATGCATTTTATGGTATATGTGTGGGCAGCTC----TTATATTTTTATCCATTCATGTATTCATCAGCCAAT----ACTGAGTACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAACTATGT---------------TC-TTTATACATGTATTCA-AAGATGAA--TTGTTTTTGGTGTTGATTAATGGGGT---AG-----GAGGTTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACAAGTTTTATAGTAAGTTGGTCTCAGCTAAGAGTTTCATATGCTAACACATGATCAAGGTGTGT s panTro4.chr17 66152875 529 - 82630442 GTTTAAATTTCTTTTACACACAACTTTCTTCTAAAATAAGGTCAGATCATATTATTTCTGTCTTATAAACAGTATACTTTAAAATAATACATTGTGTTTGATTTTATCTTAGTTATA------------------TCACAGAAATAAAAATTGAGATAAAATGGAATCTAT-TTTATGCATTTTATGGTATATGTGTGGACAGCTC----TTATATTTTTATCCATTAATGTATTCATCAGCCAAT----ACTGAGTACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAACTATGT---------------TC-TTTATACATGTATTCA-AAGATGAA--TTGTTTTTGGTGTTGATTAATGGGGT---AG-----GAGGTTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACAAGTTTTATAGTAAGTTGGTCTCAGCTAAGAGTTTCATATGCTAACACATGATCAAGGTGTGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24684742 527 - 73212453 GTTTAAATTTCTCTTACACACGACTTTCTTCTAAAATAAGGTTATATCATATTATTTCTCTCTTACAAACAGTATCCTTTAAAATAATAGATTGTGTTTGATTTTATCTCAGTTATA------------------TCACAGAAATAAAAACTGAGATAAAATGGAATC------TATGCATTTTATGGTATATGTGTGGACAGCTC----TTATATTTTTATCCATTCATGTATTCATGAGCCAAT----ACTGAGTACTTACCACCAATGACTGGACTGGTGGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGTAGAGAAGAACTTTTTATAAACACATGAACTATGT---------------TC-TTTATACATATATTCA-AAGATGAA--TTGTTTTTGGTGTTGATTAATGGGGTAGGAG-----GAGGTTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACAAGTTTTATAGTAAGTTGGTCTCAGCTAAGAGTTTCATATGCTAACACATGATCAAGATGTGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47904332 531 - 81552678 GTTTAAATTTCTTTTACACACAACTTTCTTCTAAAATAAGGTCAGATCATATTATTTCTCTCTTATAAACAGTATACTTAAAAATAATACA-TGTATTTGATTTTATCTCAGTTATA------------------TCACAGAAATAAAAATTGAGATAAAATGGAATTTAC-TTTCTGCATTTTATAGTATATGTGTGGACAGGTC----TTACATTTTTATCCATTCATGTATTCATCAGCCAAT----ACTGAGTACTCACCACCCATGACTGGACTGGTAGCAAGAAGACCTTACTAATTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGTAGAGAAGAACTTTTTATAAACGCATGAACTATGT---------------TC-TTTATACATGTATTCA-AAGATGAA--TTGTTTTTGGTGTTGATTAATGGGGTAGGAG-----GAGGTTGTTAGATTAAAGTCATTGGAAAAATATACTATTTAAATTACACAAGTTTTATAGTAAGTTGGTCTCAGCTAAGACTTTCATATGCTAACACATGATCAAGGTGTGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53017387 531 + 80904711 GTTTAAATTT-TTTTACAGACAACTTTCTTCTAAAATAAGGTCAGATCACATTATTTCTCTCTTATGAACAGTATACTTTAAAATAATACATTGTGTTTGATTTTATCTCAGTTATA------------------TCACAGAAATAAAAATTGAGATAAAACGGGATCTAC-TTTATGCATTTTATGGTATATGTGTGGACAGCTC----TTACATTTTTATCCATTCATGTATTCATCAGCCAGT----ACTGAGCACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAACTATGT---------------TC-TTTACACATATATTCA-AAGATGAA--TTGCTTTTTGTGTTGATTAATGGGGTAGGAG-----GAGATTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACACGTTTTATAGTAAGTTGGTCTCAGCCAAGAGTTTCATATGCTAACACATGATCAAAGTGTGT i rheMac3.chr16 C 0 I 314 s macFas5.chr16 52540091 531 + 80997621 GTTTAAATTT-TTTTACAGACAACTTTCTTCTAAAATAAGGTCAGATCACATTATTTCTCTCTTATGAACAGTATACTTTAAAATAATACATTGTGTTTGATTTTATCTCAGTTATA------------------TCACAGAAATAAAAATTGAGATAAAACGGGATCTAC-TTTATGCATTTTATGGTATATGTGTGGACAGCTC----TTACATTTTTATCCATTCATGTATTCATCAGCCAGT----ACTGAGCACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAACTATGT---------------TC-TTTACACATATATTCA-AAGATGAA--TTGCTTTTTGTGTTGATTAATGGGGTAGGAG-----GAGATTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACACGTTTTATAGTAAGTTGGTCTCAGCCAAGAGTTTCATATGCTAACACATGATCAAAGTGTGT i macFas5.chr16 C 0 I 314 s papAnu2.chr16 47585066 531 + 74645514 gtttaaattt-ttttacagaCAACTTTCTTCTAAAATAAGGTCAGATCACATTATTTCTCTCTTATGAacagtatactttaaaataatacattgtgTTTGATTTTATCTCAGttata------------------tcacagaaataaaaattgagataaaaCGGGATCTAC-TTTATGCATTTTATGGTATATGTGTGGACAGCTC----TtacatttttatccattcatgGATTCATCAGCCAGT----ACTGAGCACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTATT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAACTGTGT---------------TC-TTTACACATATATTCA-AAGATGAA--TTGCTTTTTGTGTTGATTAATGGGGTAGGAG-----GAGATTGTTAGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACACATTTTATAGTAAGTTGGTCTCAGCCAAGAGTTTCATATGCTAACACATGATCAAAGTGTGT i papAnu2.chr16 C 0 I 314 s chlSab2.chr16 9851448 531 - 75148670 GTTTAAATTT-TTTTACAGACAACTTTCTTCTAAAATAAGGTCAGATCACATTATTTCTCTCTTATGAACAGTATACTTTAAAATAATACATTGTGTTTGATTTTATCTCAGTTATG------------------TCACAGAAATAAAAATTGAGATAAAACGGGATCTAC-TTTATGCATTTTATGGTATATGTGTGGACAGCTC----TTACATTTTTATCCATTCATGTATTCATCAGCCAGT----ACTGAGCACTCACCACCAATGACTGGACTGGTAGCAAGAAGACCTTGCTAACTTGTT--AGAGTTATAAATTACTTTGTTAATAGATGTCACAGCTAAACTCTGTAGCAGAGAAGAACTTTTTATAAACACATGAGCTATGT---------------TC-TTTACACATATATTCA-AAGATGAA--TTGCTTTTTGTGTTGATTAATGGGGTAGGAG-----GAGATTGTTGGATTAAAGTCATTGGAAAATTATACTATTTAAATTACACACGTTTTATCGTAAGTTGGTCTCAGCCAAGAGTTTCATATGCTAACACATGATCAAGGTGTGT i chlSab2.chr16 C 0 I 314 s calJac3.chr5 112697070 526 + 159171411 ----AAATTTCTTTTACACACAACTTTCTTCCAAAATAAGTTCAGCTCATACTATTTCTTTCTTATAAACAGTATACTTCAAAAGAGTACATTGTGTTTGAGTTTATCTGAGTTATA------------------TCACGGAAATAAAAATTGAGATAAAACGGAAACTACTTTTATGTATTGTATGGTATATGTGTGGACAGCTC----TTATATTTTTATCCATTCGTGTGTTCATCAGCCAAT----ACTGAGTGCTCACCACCAGTGACTGAACTGGTGGCAAGCAGACCTTGCTAACTTATT--AGCGTTATAAATTACTTTGTTAATAGATGTCGCAACTAAAATCTGTAGTAAAGAAGAACTTTTTATAAACACGTGAACTGTGT---------------TC-TTTATGCATATATTCAGAAAATGAA--TTGTATCTGGTGTTGATTAATCAGGTAGGAG-----GAGGGTGT----TTGAACTCATTGGAAAAGTATGCTATTTAAATTACACAAGTTTTACAGAAAGTTGGTTTCAGATAACAGTTTCATATGCTAACACATGACCAAGATGTGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99439871 478 + 122082543 GCTTATGTTTCTTTTCCAAATAACTCTCTTCTAAAAGAAAGTAAGAGCCTATTGTTTTTGTCTTATAAATAACATGCCTTTAAGTGATAAGTTGTGTTATATTTCATCTCAGTTATAAGTGATAAAGGAAAAGCTATACAGAAGTAGAAACTGA---CAGGCTAACCCCAC-ATTAGACCCTGTATGGTGTC--TGTGGACAGC----------ATTGCTATTCATACGTA-------------------ACTCAG--CTCAT-----------------------------CTTTGCCAA-----------------------TTTGTTAATAGATGTCACGGCTGAAATTTGTAGTTAGCAAG---CTTTTAGAGACATATAGATTTtgtgtgtgtgtgtgtgtgtg-tgtgtgtgtgtgtgtg-tAAGTGAATGTGGTTTTTGGTGTTGAGTAATTGGGTAGGAGAGAAAGAGGT-------TTAAAGGCACTGGAAAACTATACCCTTAAAACTGTCCAAAATTTG----AGGTGAGTCTCCACT--GAGTTTCACACACTAGCATATACTGAAGATGTTT i mm10.chr11 I 958 C 0 s canFam3.chr9 39268001 519 - 61074082 ---aaaatattttttaCAAACA-------TCTAAAATAAGGTAAGACTATATAATTTCTCTCTTATAAACAGTATACTTTAAAATAATACCTTGTGTTAGACTCTGCTTAAGTTACA------------------TTATAAAAGTAGAAATTGGG--AGAGTTAAACTTAC-TTCATGCTTTTTACCATACATGTGTGGATAACTCTTATTTACATTTTCATCCACTCATTCA--CATCAGCCAATGCTCACTGAGTGTTCACTACCAGTAACTGAGCATGTAATAAGCA--CCTTGCC-ATTTGTTACAAAGCTTTAAAATACTTTGTAAATAGCTGTCACAGCTAAAATCTTCAAC---GAAGAACCCTTTATAAAC--ATGAACTGTGT---------------TCTTTTATGCATGTTTTCACAAAATGTG--T--CTTTTGTTGTTGCTTAATGGAGAAGGGG-----GGGGTCTTTCGATTAAAGTCATT-GAAGATTGTACTGTTTAAATTACACAAGTTTTGCAGTGAGTTAGTTTCAGCTAAGAGTTTAATACACTAACAAATGATCAAGGTATGT i canFam3.chr9 C 0 C 0 a score=57523.000000 s hg38.chr17_JH159146v1_alt 36510 16 + 278131 AGAAGCATTA-TAAAAT s panTro4.chr17 66153404 16 - 82630442 AGAAGCATTA-TAAAAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24685269 16 - 73212453 AGAAGCATTA-TTAAAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47904863 16 - 81552678 GGAAGCATTA-TTAAAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53018232 16 + 80904711 AGAAGCATTA-TTAAGT i rheMac3.chr16 I 314 C 0 s macFas5.chr16 52540936 16 + 80997621 AGAAGCATTA-TTAAGT i macFas5.chr16 I 314 C 0 s papAnu2.chr16 47585911 16 + 74645514 agaagcaTTA-TTAAGT i papAnu2.chr16 I 314 C 0 s chlSab2.chr16 9852293 16 - 75148670 AGAAGCATTA-TTAAAT i chlSab2.chr16 I 314 C 0 s calJac3.chr5 112697596 16 + 159171411 AGAAGCATTA-TTAAAT i calJac3.chr5 C 0 I 296 s mm10.chr11 99440349 17 + 122082543 AAAAGTACCACTTGAAT i mm10.chr11 C 0 C 0 s canFam3.chr9 39268520 17 - 61074082 AGAAGAATTATTTAAAT i canFam3.chr9 C 0 C 0 a score=35710.000000 s hg38.chr17_JH159146v1_alt 36526 8 + 278131 CAATAGTT s panTro4.chr17 66153420 8 - 82630442 CAATAGTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24685285 8 - 73212453 CAATAGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47904879 8 - 81552678 CAATAGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53018248 8 + 80904711 CAATAGTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52540952 8 + 80997621 CAATAGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47585927 8 + 74645514 CAATAGTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9852309 8 - 75148670 CAATAGTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112697908 8 + 159171411 cAATAGTC i calJac3.chr5 I 296 C 0 s mm10.chr11 99440366 8 + 122082543 CCATAGTT i mm10.chr11 C 0 I 390 s canFam3.chr9 39268537 8 - 61074082 CAAGAGTT i canFam3.chr9 C 0 C 0 a score=457433.000000 s hg38.chr17_JH159146v1_alt 36534 122 + 278131 AGCTTTATAATTAGAAAAGAACATGAATGCAGTTGTTAAACATGATGATTTTTGTTCTCTTTTGTAGCACAATTCTTCCTTATGGCTGGACCTA------TTTATATCAAAGAGTTGAAAATCCCATT s panTro4.chr17 66153428 122 - 82630442 AGCTTTATAATTAGAAAAGAACATAAATGCAGTTGTTAAACATGATGATTTTTGTTCTGTTTTGTAGCACAATTCTTCCTTATGACTGGACCTA------TTTATATCAAAGAGTTGAAAATCCCATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24685293 128 - 73212453 AGCTTTATAATTAGAAAAGAACATAAATACAGTTGTTAAACATGATGATTTTTGTTCTCTTTTGTAGCACAATTCTTCCTTATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTAAAAATCCCATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47904887 124 - 81552678 AGCTTTATAATTAGAAAAGAACATAAATGCAGTTGTTAA----GATGATTTTTGTTCTCTTTTGTAACACAATTCTTCCTTATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTGAAAATCCCATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53018256 128 + 80904711 AGCTTTATAATTAGAAAAGAACATAAGTGTGGTTGTTAAACAGGATGATATTTGTTCTCTTTTGTAGGACAATTCTTCCTTATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTAAAAATCCCATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52540960 128 + 80997621 AGCTTTATAATTAGAAAAGAACATAAGTGTGGTTGTTAAACAGGATGATATTTGTTCTCTTTTGTAGGACAATTCTTCCTTATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTAAAAATCCCATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47585935 128 + 74645514 AGCTTTATAATTAGGAAAGAACATAAGTGTGGTTGTTAAACAGGATGATATTTGTTCTCTTTTGTAGGACGATTCTTCCTTATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTAAAAATCccatt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9852317 128 - 75148670 AGCGTTATAATTAGAAAAGAACGTAAGTGTGGTTGTTAAACAGGATGATATTTGTTCTCTTTTGTAGGACAATTCTTCCTTATGGCTGGACCTAGTTATGGTTATATCAAAGAGTTAAAAATCCCATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112697916 125 + 159171411 AGCTTTAGAATTAGAAAAGAACACAAATGTAGTTGTTAAACATGATGATTTTTGTTCTTTT---TAGCACAATTCCTTCTAATGGCTGGACCTAGTTATGTTTATATCAAAGAGTTAAAAATCCCATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99440764 126 + 122082543 AGCCTTGTAGTC-GGAAGGGATATAAACACAGCTGTCAAACATTATAATTTGTATTCTCTTCTTTAGATCAATTCTTACTTGTGGTCTGACTCAGTTATATTTAAGTCAGA-CTTTAAAATCCCCATT i mm10.chr11 I 390 C 0 s canFam3.chr9 39268545 126 - 61074082 AGCCTTATAAG-AGCTAGGAATATCAGTGCACTTATTAAACATGATAATTTTTATTTTCTTCTTTAGCACGATTATTCCTTATGACTGGACCCAATTACAATTAAGTGAAAGAGTT-AAAGTCTCATT i canFam3.chr9 C 0 I 16 a score=25162.000000 s hg38.chr17_JH159146v1_alt 36656 8 + 278131 TTTAGTTA s panTro4.chr17 66153550 8 - 82630442 TTTAGTTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24685421 8 - 73212453 TTTAATTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47905011 8 - 81552678 TTTAATTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53018384 8 + 80904711 TTTAGTTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52541088 8 + 80997621 TTTAGTTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47586063 8 + 74645514 tttagttg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9852445 8 - 75148670 TTTAGTTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112698041 8 + 159171411 TTTAATTA i calJac3.chr5 C 0 C 0 s mm10.chr11 99440890 8 + 122082543 TTTAAGTG i mm10.chr11 C 0 C 0 e canFam3.chr9 39268671 16 - 61074082 I a score=800490.000000 s hg38.chr17_JH159146v1_alt 36664 318 + 278131 TTTTCCAttttatttttattttgagacagggtctcactgtgtgacccaggctggagtgcagtga-----------------------------------------cacaatcacagctcactgcagccttgacctcccaggctcaagtgatcctcctgc----ttcagcctctcaagtagctgggactacaggcacacacgccatgcttacataatttttattt------------------attta---------tttttggtagaaacagggtcccactatgttgcccaggctggactcaaactcctgagctcaagtgatcctcccaccccaccctcccaaaatgatgggattacaggtgtgagcccctgtgtccagccGtttttttt s panTro4.chr17 66153558 315 - 82630442 TTTTCCAttttatttttattttgagacagggtctcactgtgtgacccaggctggagtgcagtga-----------------------------------------cacaatcacagctcactgcagccttgacctcccaggctcaagtgatcctcctgc----ttcagcctcccaagtagctgggactacaggcacacacgccatgcttacataatttttattt------------------attta---------tttttggtagaaacagggtcccactatgttgcccaggctggactcaaactcctgagctcaagtgatcctcccaccccaccctcccaaaatgatgggattacaggtgtgagcccctgtgtccagccG---ttttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24685429 288 - 73212453 TTTTCAATTTTATTTGTATTTTGAGAcaggg--------------------tggagtgcagtga-----------------------------------------cacaatcacagctcactgcagccttgacctcccaggctcaagttatcctcctgc----ttcagcctcccaagtagctgggactacaggcacgcacaccatgcttacataatttttattt-------------------tgtt---------tttttggtagaaacagggtcccactatgttgcccaggctggactcaaactcctgagctcaagtggtcttcccaccccaccctcccaaaatgatgggattacaggtgcgagcccctgtgtccagcc--------- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47905019 322 - 81552678 TTTTCAAttttatttttattttgagacagggtctcactgtgttacccaggctggagtgcagtga-----------------------------------------cacaatcacagctcactgcagccttgacctcccaggctcaagtgaccctcctgcttcattcagcctcccaagtagctggggctacaggcacgcacaccatgcttacataatttttattt------------------ttttatttttattttttttggtagaaacagtgtcccactatgttgcccaggctggactcaaactcctgagttgaagtgatcctcccaccccaccctcccaaaatgatgggattacaggtgtgagcccctgtgtccagcc--------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53018392 327 + 80904711 TTTTCAAttttatttttattttgtgacagggtctcactgtgttacccaggctg-----------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----------------------------------gctcaagtgatcctcctgc----ttcagcctcccaagtagctgggactataggcatgcacaccatgcctagataatttttatttttattttatttttattattttta----ttatttttttgacagaaacgggattccactatgttgcccaggctggactcaaactcctgagttcaagtgattctcccaccccaccctcccaaaatgatgagattacaggtgtgagcccctgtgtccagcc--------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52541096 332 + 80997621 TTTTCAAttttatttttattttgtgacagggtctcactgtgttacccaggctggagtgccgtga-----------------------------------------tacaatcacagctcactgcagccttgaccttccaggctcaagtgatcctcctgc----ttcagcctcccaagtagctgggactataggcatgcacaccatgcctagataatttttatttttattttatttttattattttta----ttttttttttgacagaaacgggattccactatgttgcccaggctggactcaaactcctgagttcaagtgattctcccaccccaccctcccaaaatgatgagattacaggtgtgagcccctgtgtccagcc--------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47586071 335 + 74645514 ttttcaattttatttttattttgtgacagggtctcactgtgttacccaggctggagtgccgtga-----------------------------------------cacaatcacagctcactgcagccttgaccttccaggctcaagtgatcctccggc----ttcagcctcccaagtagctgggactataggcatgcacaccatgcctagataatttttatttttattttatttttattattttta-tttttatttttttgacagaaaCGGgattccactatgttgcccaggctggactcaaactcctgagttcaagtgattctcccaccccaccctcccaaaatgatgagattacaggtgtgagcccctgtgtccagcc--------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9852453 334 - 75148670 TTTTCAAttttatttttattttgtgacagggtctcactgtgttacccaggctggagtgccatga-----------------------------------------cacaatcacagctcactgcagccttgaccttccaggctcaagtgatcctcctgc----ttcagcctcccaagtagctgggactataggcatgcacaccatgcctagataatttttatttttattttatttttattattttta--tttttattttttgacagaaacgggattccactatgttgcccaggctggactcaaactcctgagttcaagtgattctcccaccccaccctcccaaaatgatgagattacaggtgtgagcccctgtgtccagcc--------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112698049 309 + 159171411 TTTTCACttttatttttattttgagacagggtcttactgtgttaccaaggctggagagcagtga-----------------------------------------tacaatcacagctcactgcag--------------gctcaactgatcctcctgc----ttcagcctcccaagtagctgggactacaggcatgcataccatgcctaggtaatttctctct------------------ctctc---tctctcttttgggtagaagcagggtctcactatattgcccaggctggactcaaactgctgggctcaagtgatcccctc-tcccagcctcctaaaatgttgggattgcaggtgtgagcccctgtgcccagGCAATTTTTTT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39268671 16 - 61074082 I e mm10.chr11 99440898 0 + 122082543 C a score=648275.000000 s hg38.chr17_JH159146v1_alt 36982 306 + 278131 ttttttttttttttttttgagacggagtcttgctctgtcaccaggctggagtgcagtggcatgatctcagctca---------ctgcaacctccccctccccggttcacacaattctcctgcctcagcctccctagtagctgggattacaggtgggcaccaccacgccgagctgatttttgtatttttagtagagatggggtttcaccacgttggccagcctgatcttgatcccttgaccttgtgatctgcctgcctcagcctcccaaagtgctggcattacaggcgtgagccactgcacccggccCAGCCAA----------TT s panTro4.chr17 66153873 306 - 82630442 ttttttttttttttttttgagacagagtcttgctctgtcaccaggctggagtgcagtggcgtgatctcagctca---------ctgcaacctccgcctccccggttcacacaattctcctgcctcagcctccctagtagct-ggattacaggtgggcaccaccatgccgagctgatttttgtatttttagtagagatggggtttcaccacgttggccagcctgatcttgatcccttgaccttgtgatctgcctgcctcagcctcccaaagtgctggcattacaggcgtgagccactgcacccggtcCAGCCAA---------TTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24685717 304 - 73212453 -tttttttttttttttttgagacagagtcttgctctgtcaccaggctggagtgcagtggcgtgatcttagctca---------ctgcaacctccacctcccgggttcatgcaattctcctacctcagcctcccgagtagctgggattacaggcgggcaccaccacaccgagctgatttttgtatttttagtagagatggggtttcaccatgttggccagcctgatcttgagcccttgacctcgtgatctgcccacctcagcctcccaaagtgctggaattacaggcgtgagtcactgcacctggccCAGCCAA-----------A i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47905341 323 - 81552678 ttttttttttttttttttgggacggagtcttgctctgtcaccaggctggagttcagtggcgggatctcagctcaacctctgagctgaga--tctgcctcccaggttcacgcaattctcctgcctcagactccctagtagctgggattacaggtgggcaccacaacgccgagctgatttttgtatttttagtagagatggggtttcaccatgttggccagcctgatcttgatcccttgaccttgtgatctgcccgcctcagcctcccaaagtgctggcattacaggtgtgagccactgcacccggccCGGCCAAtttttttttttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53018719 302 + 80904711 ---------AAtttttttgagacagagtctggctctgtcactaggctggagtgcagtggcgcaatctcggctca---------ctgcaagctctgccttctgggttcacacgattctcctgcctcagcctcccgagtaactgggattacaggagggcaccatcacgctcagctgatttttgtatttttagtagagacagggtttcaccatgttggccagcctggtcttgatctcttgacctcatgatctgcccacctcagcctcccaaagtgctggcattacaggtgtgagccactgct-ctggcccagccAA----tttttttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52541428 300 + 80997621 ---------AAtttttttgagacagagtctggctctgtcactaggctggagtgcagtggcgcaatctcggctca---------ctgcaagctctgccttctgggttcacacgattctcctgcctcagcctcccaagtaactgggattacaggagggcaccatcacgctcagctgatttttgtatttttagtagagacagggtttcaccatgttggccagcctggtcttgatctcttgacctcatgatctgcccacctcagcctctcaaagtgctggcattacaggtgtgagccactgca-ctggcccagccAA------tttttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47586406 300 + 74645514 ---------aatttttttgagacagagtctggctctgtcactaggctggagtgcagtggcacaatctcggctca---------ctgcaagctctgccttctgggttcacacgatcctcctgcctcagcctcccgagtaactgggattacaggagggtaCCATcacgctcagctgatttttgtattgttagtagagacagggtttcaccatgttggccagcctgatcttgatctcttgacctcatgatctgcccacctcagcctcccaaagtgctggcattacaggtgtgagcaactgca-ctggcccagccaa------tttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9852787 296 - 75148670 ---------AAtttttttgagacagagtctggctctgtcactaggctggagtgcagtggcgcaatctcggctca---------ctgcaagctccgccttctgggttcacacgattctcctgcctcagcctcccgagtaactgggattacaggagggcaccatcacgcttagctgatttctgtatttttcgtagagacagggtttcaccatgttggccagcctggtcttgatctcttgacctcatgatctgcccatctcagcctcccaaagtgctggcattgcaggtgagtgccactgca-ctggcccagccAt----------tt i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39268671 16 - 61074082 I e mm10.chr11 99440898 0 + 122082543 C e calJac3.chr5 112698358 0 + 159171411 C a score=26923.000000 s hg38.chr17_JH159146v1_alt 37288 10 + 278131 TTTTTCTTTT s panTro4.chr17 66154179 10 - 82630442 TTTTTCTTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24686021 10 - 73212453 TTTTTTTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47905664 10 - 81552678 tttttttttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53019021 10 + 80904711 tttttttttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52541728 10 + 80997621 tttttttttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47586706 10 + 74645514 tttttttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9853083 10 - 75148670 tttttttttt i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39268687 10 - 61074082 TTTTTAACTT i canFam3.chr9 I 16 C 0 e mm10.chr11 99440898 0 + 122082543 C e calJac3.chr5 112698358 0 + 159171411 C a score=4095.000000 s hg38.chr17_JH159146v1_alt 37298 1 + 278131 T s panTro4.chr17 66154189 1 - 82630442 T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24686031 1 - 73212453 T i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47905674 1 - 81552678 t i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53019031 1 + 80904711 t i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52541738 1 + 80997621 t i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47586716 1 + 74645514 t i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9853093 1 - 75148670 t i chlSab2.chr16 C 0 C 0 s mm10.chr11 99440898 1 + 122082543 T i mm10.chr11 C 0 C 0 s canFam3.chr9 39268697 1 - 61074082 T i canFam3.chr9 C 0 C 0 e calJac3.chr5 112698358 0 + 159171411 C a score=1169170.000000 s hg38.chr17_JH159146v1_alt 37299 339 + 278131 TTTGAGAAATAACTTTGTCTATATCTTATTCCAGAAATCTTTGGCTAGT-TTTGGTAAGTTTTTGAGGTTTTAAATTTAAACTAAAATATGATACAATAGTGTCATCAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CCAATTTG------------TTGGAGTAGAAAAAATTCTACTGGAAAGCCTCCCACCTGTTTATATAAGGGC----AGGAGAATTTGCTGGCTTCTC--TATATCACTGAGTTTTGTACTTTTGTAGATTATTCGATCTTATAATGTGACCACAGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTCGAGGACTGAGTAAAGATCCTA s panTro4.chr17 66154190 339 - 82630442 TTTGAGAAATAACTTTGTCTATATCTTATTCCAGAAATCTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAAATTTAAACTAAAATATGATACAATAGTGTCATCAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAG----TCTA---CCAATTTG------------TTGGAGTAGAAAAAATTCTACTGGAAAGCCTCCCACCTGTTTATATAAGGGC----AGGAGAATTTGCTGGCTTCTC--TATATCACTGAGTTTTGTACTTTTGTAGATTATTCGATCTTATAATGTTACCACAGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCCGAGTTATATCTCGAGGACTGAGTAAAGATCCTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24686032 339 - 73212453 TTTGAGAAATAACTTTGTCTATGTCTTATTCCAGAAATCTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAAATTTAAAACTAAATATGGTACAATAGTGTTATCCT-----------T-----ATGAAGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGGAGTAGAAAGCATTCTACTGGAAAGCCTTCCACCTGTTTATGTAAGGGC----AGGAGAATTTGCTGGCTTCTC--TATGTCACTGAGTTTTGTTCTTTTGTAGATTATTCAATCTTATAATGTGACCACAGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTAGAGGACTGAGTAAAGATCCTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47905675 339 - 81552678 ttttAGAAATAACTTTGTCTATGTCTTATTCCAGAAATCTTTGGCTGGT-TTTGATAAGTTTTTAAGGTTTTAAATTTAAACTAAAATATGATACAATAGTGTTATTAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGGAGTAGAAAAAATTCTACTGAAAAGGCTGCCACCTGTTTATGTAAGGGC----AGGAGAATTTGCGGGCTTCTC--TATGTCACTGAGTTTTGTACTTTTGTAGATTATTTGATCTTCTAATGTGACCACAGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATAGCTCAAAGACTGAGTAAAGATCCTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53019032 337 + 80904711 tttGAGAAATAAC--TGTCTATTTCTTATTCCAGAAATCTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAAATTTAAACTAAAACATGATACAATAGTGTTGTTAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGCAGGAGAAAAAATTCTACTGGAAAGGTTCCCACCTGTTTATGTAAGGGC----AAGAGAATTTGCTGGCTTCTG--TATGTCACTGAGTTTTGTACTTTCGTAGATTATTTGATCTTATAATGTGACCACGGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTCGAGGACTGAATAAAGATCCTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52541739 337 + 80997621 tttGAGAAATAAC--TGTCTATTTCTTATTCCAGAAATCTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAAATTTAAACTAAAACATGATACAATAGTGTTGTTAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGCAGGAGAAAAAATTCTACTGGAAAGGTTCCCACCTGTTTATGTAAGGGC----AAGAGAATTTGCTGGCTTCTG--TATGTCACTGAGTTTTGTACTTTCGTAGATTATTTGATCTTATAATGTGACCACGGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTCGAGGACTGAATAAAGATCCTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47586717 337 + 74645514 tttgagaaataac--tGTCTATTTCTTATTCCAGAAATCTTTGGCTAGT-TTGGATAAGTTTTTGaggttttaaatttaaactaaaacATGATACAATAGTGTTGTTAT-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGCAGGAGAAAAAATTCTACTGGAAAGGTTCCCACCTGTTTATGTAAGGGC----AAGAGAATTTGCTGGCTTCTG--TATGTCACTGAGTTTTGTACTTTCGTAGATTATTTGATCTTATAATGTGACCATGGGAAATCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTCGAGGACTGAATAAAGATCCTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9853094 337 - 75148670 tttGAGAAATAAC--TGTCTATTTCTTATTCCAGAAATCTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAAATTTAAACTAAAACATGATACAATAGTGTTGTTAC-----------T-----ATGAGGTA--TAGTC-----------------------------------------ATTCAA----TCTA---CTAATTTG------------TTGCAGGAGAAAAAATTCTACTGGAAAGGTTCCCACCTGTTTATGTAAGGGC----GAGAGAATTTGCTGGCTTCTG--TATGTCACTGAGTTTTGTACTTTCGTAGATTATTTGATCTTATAATGTGACCACGGGAAACCAAGTGAGTTTTTCACAGCAATTCA-TTTTTCTGAGTTATATCTCGAGGACTGAATAAAGATCCTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112698358 353 + 159171411 TTTGAGAAATAACTTTGTCTATGTCTTATTCCACAAATTTTTGGCTAGT-TTTGATAAGTTTTTGAGGTTTTAGATTTAAACTAAAATATGATACAATAGAGTTACTATATAGTCATATAT-----ATGCATTATTTAGTC-----------------------------------------ATCCAA----TCTA---CTAATTTA------------TTGGAGTAGAAAAATTTCTACTGGAAAGCCCCCCACCTGTTTATGTAAGGGC----AGGAGAATTTACTGGCTTCTC--TATGCCACTGAATTTTGTACTTTGGTAGATTATTTGATCTTACAATGTGAGCACAGGAAATCAAGTGAGCTTTTCACAGTAATTCGTTTTTTCTGAGTTATATCTCAAAGACTGAATAAAGATCCTA i calJac3.chr5 C 0 I 318 s mm10.chr11 99440899 336 + 122082543 TTGAAGAAATAAC----TTCATGTATTAACCC----TTTGTTGCATAAC-ATTTATAGACTTTTGATGTTTTAAATTTGAACTAAAATCCGATACTACAAGGCGATAGT-----------G-----TTGAGGCT--CTGCC-----------------------------------------ATCCCA----TCCACCGCTGATCTG------------CCTGAATAGAAGCACTTGGATTGGAGCTTCTCTC-TCTCTCCACACAGGAGCACTTAGGACAGGACACTGGGTCCTCGGTGTGTCATCAAGACTTACCCTTTGGCAAGTTATTCTAGTTTATAAAGTGACTACGGGATATTAAGCTACTGTTTCACAGGaatt---tttttaaaaaata-atatCAGAGACCGAATTAAGAGCCTA i mm10.chr11 C 0 C 0 s canFam3.chr9 39268698 386 - 61074082 TTGGAAAAATAAC----------AGCTATTCCAGAAATTTTTGGCTACTATTTGAAGATTTTTTGAGATTTCAAACTTAAACTAAAATATGATACAATAGGGCTATTAt-----------ttttaattgaagta--taatcaacagacagtgtcgtgttagtttcaggtgtacaacatagtgattcaacaattcta---tcattatggggtTCAGTCATCCAATGTGGAAAAATTTCTGCTGTGAAGACTTCCACATGTTTATGTCAGGGC----A-GAGAATTTCCCAGCTGCTC--TACAGCGTTGAGTTTTATGCTCTGGTAGATTATTATAACTTGTAATGTGACCAGAGGAAACCAGGCTGGTACTTCATAGCAATTAA-TTT----GAATTATA-CCCAAGGACTAGATACAGATCCTG i canFam3.chr9 C 0 C 0 a score=1134826.000000 s hg38.chr17_JH159146v1_alt 37638 310 + 278131 TTGACCCTTGTTCATACACAAAGTCAT---GAATTTAGAGACCCTGGTATTTCAGGCTGTTGGGTGACTGCAGCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGGAGATACA-TTTTGACTTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGGCTATTATAAGCACTACAGTTTTCAGAGGGCTTTCAACTTTTTTCTTTTTTTTTGTATTCTACCATGACCAAGCTATTGCAA-TCAC-ATATGATAGACATAGAACCTGCAGTCTCTGG s panTro4.chr17 66154529 310 - 82630442 TTGACCCTTGTTCATACACAAAGTCAT---GAATTTAGAGACCCTGGTATTTCAGGCTGTTGGGTGACTGCAGCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGGAGATACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGGCTATTATAAGCACTACAGTTTTCAGAGGACTTTCAACTTTTTTCTTTTTTTTTGTATTCTACCATGACCAAGCTATTGCAA-TCAC-ATATGATAGACATAGAACCTGCAGTCTCTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24686371 311 - 73212453 TTGAAGTTTGTTCATACACAAAATCAT---GAATTTAGAGATGCTGGTATTTCAGGCTGTTGGGTGACTGCAGCTGTAAATAAATGCTTATTAGATCCTAACTTCCT---TGTAGCTAGTAGGAGATACATTTTTGACCTCTGAGAC--ACTCTACCGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGGCTATTATAAGCACTACAGTTTTCAGAGGACTTTCAACTTTTTACTTCTCTTTTTTCTTCTACCATGACCAAGCGATTGCAG-TCAC-ATATGATAGACATAGAACCTGCAGTCTCTGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47906014 310 - 81552678 TTGACACTTGTTCATACACAAAGTCAT---GAATTTAGAGACCCTGGTATTTCAGGCTGTTGGGTGACTGCAGCTGTAAATAACTATTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGGAGATACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGGCTATTATAAGCACTACAGTTTTCAGAGGACTTTCAACTTTTTTCTTCTCTTTTTTCTTCTATCATGACCAAGCTATTGCAG-TCAC-ATATGATAGACATAGAACCTGCAGTCTCTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53019369 307 + 80904711 TTGACCCTTGTTCATACACAGAGTCAT---GAATTTAGAGCCCCTGATATTTCAGGCTGTTGAGTGACTGCATCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGAAGGGACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGACTATTATAAGCACTACAGTTTTCAGAGGACTTTCAACTTTTTTCTTCTTTTTT---TCCTACCATGACCAAGCTATTGCAG-TCGC-ATATGATAGACGTAGAACCTGCAGTCTGTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52542076 307 + 80997621 TTGACCCTTGTTCATACACAAAGTCAT---GAATTTAGAGCCCCTGATATTTCAGGCTGTTGAGTGACTGCATCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGAAGGGACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGAAGACTATTATAAGCACTACAGTTTTCAGAGGACTTTCAACTTTTTTCTTCTTTTTT---TCCTACCATGACCAAGCTATTGCAG-TCGC-ATATGATAGACGTAGAACCTGCAGTCTGTGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47587054 304 + 74645514 TTGACCCTTGTTCATACACAAAGTCAT---GAATTTAGAGCCCCTGATATTTCAGGCTGTTGAGTGACTGCATCtgtaaataaatacttattagaTCCCAACTTCCT---TGTAGCTAGTAGAAGGGACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGTTGGGGAGACTATTATAAGCACT--AGTTTTCAGAGgactttcaacttttttcttctttttt---t-ttaccaTGACCAAGCTATTGCAG-TCGC-ATATGATAGACGTAGAACCTGCAGTCTGTGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9853431 307 - 75148670 TTGACCCTTGTTCATACACAAAGTCAT---GAATTTAGAGCCCCTGATATTTCAGGCTGTTGAGTGACTGCATCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGAAGGGACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGTGTTAATGATTAATATTAAGTATGGCCAGTAGCTGGGAAGACTATTATAAGCACTATGGTTTTCAGAGGACTTTCAACTTTTTTCTTCTTTTTT---TTCTACCACGACCAAGCTATTGCAG-TCGC-ATATGATAGACGTAGAACCTGCAGTCTGTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112699029 293 + 159171411 TTGACCCTTGTTCATACACAG-----------ATGTAGAGCCCCTGATATTTCAGGCTCTTGGGTGACTGCATCTGTAAATAAATACTTATTAGATCCCAACTTCCT---TGTAGCTAGTAGGAGGTACA-TTTTGACCTCTGAGAC--ACTCTACTGAGAGCGTTAATGATTAATACTATATAAGGCCAGTAGTTGGGAAAGCTATTATAAGCACTACGGTTTTCAGAAGACTTTCAACTTTT------TCTTTT---TTCTACCATGAATAAGCTATTGCAG-TTGC-ATATGGTAGGCAAAGAACCTGCAGTCTCTGG i calJac3.chr5 I 318 C 0 s mm10.chr11 99441235 285 + 122082543 TTGACCCTTACTCATACATATATGTAC---AATTTTAGAGTCCTTGCTATTCCAGGCTGTTTGGTGACTGCGTCTGTAAAGAAATTC----TAGATTCCAGCTTCCTGAATGTGACT-----GAGATGCA-TTTTGACCTCTGAGACA-ACTCAGCT--GAGTGTTAATGATTAATGTTATGCTTGGACAGTCGTTTAGAGTGCCGTTAT---------AGCTCTCAGAGGACTTTCTACTTTC------GATTTT---CCACATTATGGACGAGCTATCACAGCTCAG-ATATG-TAGACGTACAGTGTACAGGCTCTAG i mm10.chr11 C 0 C 0 s canFam3.chr9 39269084 299 - 61074082 TTGACTCTTGTTCATACACAA-GTCATTTAGAATTTAGAGCCCCTGCTATTCCAGCCTGTTGGATGACAGCATCT----ATAAATATTTATTAGATTCCCACTTCCT---TATAGCTGATAGGAAGTGCA-TTTTGACCTCTGAGACAGACTCTGCTGAGGGTGTTAATGATTAA------GTATGGCCAGGAATTTGGAGAGTTATTACAAGCACTACAGTATCCAGAGGATTTTCAACTCCACCCACCCAC------CCCCAATATGGACAAAGTACTGTAG-GCCCAATGGGATACATATAGAATCTGCAGTATCTGG i canFam3.chr9 C 0 I 198 a score=828042.000000 s hg38.chr17_JH159146v1_alt 37948 269 + 278131 AGTGGCATCTTGTTCAGACagggagaaggagggtggaagtatggatgaa-------ggaagttttgccctgagtta-----tttgttgaagcgaggagatgggtacaaggaggttgatgtatagta--------AACTTACATCATTGTATTCTGCACAGTTAATCAGTCATATTTAGGTTTTTGTTTGTACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGATGGATTTATTTATTGTCTCATAGTGGCTATAGAATGATTGGATGAAGAATATAA-ATATA s panTro4.chr17 66154839 269 - 82630442 AGTGGCATCTTGTTCAGACagggagaaggagggtggaagtatggatgaa-------ggaagttttgccctgagtta-----tttgttggagcgaggagatgggtacaaggaggttgatgtatagta--------AACTTACATCATTGTATTCTGCACAGTTAATCAGTCACATTTAGGTTTTTGTTTGTACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGATGGATTTATTTATTGTCTCATAGTGGCTATAGAATGATTGGATGAAGAATATAA-ATATA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24686682 269 - 73212453 AGTGGCATCTTGTTCAGACagggagaaggagggtggaagtatagatgaa-------ggaagtttggccctgagtta-----tttgttgaagcgaggagatgggtacaaggaggttgatgtatagta--------AACTTACATCATTGTATTCTGCACAGTTAATCAGTCATATTTAGGTTTTTGTTTGTACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGATGGATTTATTTATTGTCTCATAGTGGCTGTAGAATGGTTGGATGAAGaatataa-atata i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47906324 269 - 81552678 AGTGGCATCTTGTTCAGACagggagaaggagggtggaagtatagatgaa-------ggaagtttggccctgagtta-----tttgttgaagcgaggagatgggtacaaggaggttgatGTGTAGTA--------AACTTACATCATTGTATTCTGCACAGTTAATCAGTCATATTTAGGCTTTTGTTTGTACTTATTTGGTAATTCTCAGCTGTGTTTCGATGAGTTGGATGGATTTATTTATTGTCTCATAGTGGCTATAGAATGATTGGATGAAGAATATAA-ATATA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53019676 276 + 80904711 AGTGGTGTCTTGTTCAGACagggagaaggagggtggaagtataggtgaaggaagttggaagtttggccctgagtta-----tttgttgaagtgaggagatgggtacaaggaggtcgatatatagta--------AACTTACATCATTGTATTCGGCACAGTTAATCTGTCATATTTAGGTTTTTGTTTGCACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGGTGGATTTGTTTATTGTCTCATAGTGGCTACAGTATGATTGGATGAAGaatataa-atata i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52542383 276 + 80997621 AGTGGTGTCTTTTTCAGACagggagaaggagggtggaagtataggtgaaggaagttggaagtttggccctgagtta-----tttgttgaagtgaggagatgggtacaaggaggtcgatatatagta--------AACTTACATCATTGTATTCGGCACAGTTAATCTGTCATATTTAGGTTTTTGTTTGCACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGGTGGATTTGTTTATTGTCTCATAGTGGCTACAGTATGATTGGATGAAGAATATAA-ATATA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47587358 276 + 74645514 AGTGGTGTCTTGTTCAGACAGGGAGAAGGAGGGTGGAAGTATAGGTGAAGGAAGTTGGAAGTTTGGCCCTGAGTTA-----TTTGTTGAAGTGAGGAGATGGGTACAAGGAGGTCGATATATAGTA--------AACTTACATCATTGTATTCGGCACAGTTAATCTGTCatatttaggtttttgtttgCACTTATTTGGTAATTCTCAGCTGTGTTTTGATGAGTTGGGTGGATTTGTTTATTGTCTCATAGTGGCTACAGTATGATTGGatgaagaatataa-atata i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9853738 275 - 75148670 AGTGGTGTCTTGTTCAGACagggagaaggagggtggaagtataggtgaaggaagttggaagtttggccctgagtta-----tttgttgaagtgaggagatgggtacaaggaggttgatatatagta--------AACTTACATCATTGTATTCGGCACAGTTAATCTGTCATATTTAGGTTTTTGTTTGC-CTTATTTGGTAATCCTCAGCTGTGTTTTGATGAGTTGGGTGGATTTGTTTATTGTCTCATAGTGGCTACAATATGATTGGATGAAGAATATAA-ATATA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112699322 264 + 159171411 AGCGGTGTCtagttcagacagggagaaggagggagg-agtacagatgaa-------gaaaatgtggccgtgagtta-----tttgttgaagcaaggagaagggtacgaggaggttcatgtataGTG--------AACTTACATCATTGTATTCTGCAC----AATCTGGCATATTTAGTTTTTTGTTGGTACTTATTTGGTAATTCTCAACTGTGTTTTGATGAGTTGAGTGGATTTATATATTGTCTCATAGTGGCTttagaatgattggatgaagaatataa-atcta i calJac3.chr5 C 0 C 0 s mm10.chr11 99441520 255 + 122082543 AGAGGTTTTCTGG--AGATCAGGAGGTGGGGGAGGGGAGACAAGATGAA-------GAAC------CCCTGACATACAGACTTTGTTGAAGC-AGGACA-----ACGAGGGGGCTCTTCAATGGCATAGATGTCAACTTCAGTTATTGTCTTTACCTGAATTAGTCCGGTGCCTCCAGCTTATGATTTGA-------TGTTTCTGCTTATTTATGACTTGGGGACTTGG-TGGATCTG----TTATCTC--AGTGGCTATTGGATTATCAGAATGAGACTATAATATATA i mm10.chr11 C 0 I 5987 e canFam3.chr9 39269383 198 - 61074082 I a score=2039464.000000 s hg38.chr17_JH159146v1_alt 38217 677 + 278131 AATTGTTTTAGAAAATAAAACAAACTT-AAAATTGGAGCAAGTACCAAGCAGATCTGAAATACAAACCAGAGGAAATaaataatgccgttaaaattacaagttcagtggatggatccaggaacagattaagccaggattattgaac-aaaatgtagctctgaggaaaatttccagaatgcagctaagtgacgaaggaggaagtcaagaaggcatgaaggctataattagaaggtctaaatatgtctaatcagagttccagaagaagacacaagagaataagaaaacattcaacaaaataaaaagtgagaattttatagaattctt-----taaa--------aaaaacccaagttctcagattaaggagacctaatgaattccaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagagaataaatcaccaacaaaggaatggtggttagactgatgactgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaatgtgctgggaggaaataactgccattccggaattttctgactcggtaacattatatttgaagaagggtaaaataaagccattttcaacatttaaaaaactgaatttgccatcaact------------tctaagttttcactaagagcaatctgaaagaa s panTro4.chr17 66155108 677 - 82630442 AATTGTTTTAGAAAATAAAACAAACTT-AAAATTGGAGCaagtaccaagcagatctgaaatacaaaccagaggaaataaataatgccgttaaaattacaagttcagtggatggatccaggaacagattaagccaggattattgaac-aaaatgtagctgtgaggaaaatttccagaatgcagctaagtgacgaaggaggaagtccagaaggcatgaaggctataattagaaggtctaaatatgtctaatcagagttccagaagaagacacaagagaataagaaaacattcaacaaaataaaaagtgagaattttatagaattctt-----taaa--------aaaaacccaagttctcagattaaggagacctaatgaattccaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagagaataaatcaccaacaaaggaatggtggttagactgatgactgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaatgtgctgggaggagataactgccattccggaattttctgactcggtaacattatatttgaagaagggtaaaataaagccattttcaagattaaaaaaactgaatttgccatcaact------------tctaagttttcactaagagcaatctgaaagaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24686951 674 - 73212453 aattgttttagaaaataaaacaaacttgaaaattggagcaagtaccaagcagatctgaaatacaaacaagaggaaataaatgatgccattaaaattacaagttcagtggatgggtccaggaacagattaagccaggattattgaac-aaaatgtagctctgaggaaattttccagaacgcagctaagtgatgaaggaggaagtcaag-aggcatgaaggctataattagaaggtctaaatatgtctaatcagagtttcagaagaa-acacaagagaataagaaaacattcaacaaaataaaaa-tgagaattttatagaattctt-----taaa--------aaaaacccaagttctcagattaaggagacctaatgaattccaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagagaataaatcaccaacaaaggaatggtggttagactggtgactgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaaagtgctgggaggaaataactgccattccggaattttctgactcggtaacattatatttgaagaagggtaaaataaagccattttcaagattaaaaaaactgaatttgccatcaact------------tctaagttttc-ctaagagcaatctgaaagaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47906593 676 - 81552678 AATTGTTTTAGAAAATAAAACAAACTTGAAAATTGGAGCAAGTACCAAGCAGATCTGAAATACAAACCAGAGGAAATaaataatgccattaaaattacaagttcagtggatgggtccaggaacagattaagccaggattattgaac-aaaatgtagctctgaggaaaatttccagaatgcagctaagtgacaaaggaggaagtcaag-aggcatgaaggctataattagaaggtctaaatatgtctaatcagagttccagaagaagacacaagagaataagaaaacattcaacaaaataaaaagtgagaattttatagaattctt-----taaa--------aaaaacccaagttctcagattaaggagacctaatgaattcca-gcaaaaggaataaaaataaatc---actacacacactgaggcagaaaaccagacaa-------ttacaagcagatagagaataaatcaccaacaaaggaatagtggttagactggtggctgactcctcaaaggcaacaatggacactggaaatggaatagaatcttcaatgtgctgggaggaaataactgccattccggaattttctgactcggtaacattatatttgaagaagcgtaaaataaagccattttcaagattcaaaaaactgaatttgccatcaact------------tttaagttttcactaagagcaatctgaaagaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53019952 685 + 80904711 aattcttttagaaaataaaataaaCTTGAAAATTGGAGTaagtaccaagcagatctgaaatacaaaccagaggaaataaacaatgccgttaaaattacaagttcagtggatgagtccaggaacagattaaaccaggattattgaac-aaaatgtggctctgaggaaattttccagaatgcaaccaagtgacgaaggaggaagtcaag-aggcatgagggctagaattagaaggtctaaatatgtctaatcagagttccaggagaagacatgagagaataggaaaacattcaacaaaataaaaagtgagaattttatagaattgtt-----aaaaaaaaccccaaaaacccaagttctcagattaaggagacctaatgaatttcaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagaaaataaatcaccagcaaaggaatggtggttagactgatggctgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaatgtggcgggaggaaataactgccattccagaattttctgactcggtaacattatatttgaaagaggataaaataaagccattttcaagatttaaaaaactgaatttgccatcaact------------tctaagttttcgctaagagcaatctgaaagaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52542659 685 + 80997621 AATTCTTTTAGAAAATAAAATAAACTTGAAAATTGGAGTaagtaccaagcagatctgaaatacaaaccagaggaaataaacaatgccgttaaaattacaagttcagtggatgagtccaggaacagattaaaccaggattattgaac-aaaatgtggctctgaggaaattttccagaatgcaaccaagtgacgaaggaggaagtcaag-aggcatgagggctagaattagaaggtctaaatatgtctaatcagagttccaggagaagacatgagagaataggaaaacattcaacaaaataaaaagtgagaattttatagaattgtt-----aaaaaaaaacccaaaaacccaagttctcagattaaggagacctaatgaatttcaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagaaaataaatcaccagcaaaggaatggtggttagactgatggctgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaatgtgccggaaggaaataactgccattccagaattttctgactcggtaacattatatttgaaagaggataaaataaagccattttcaagatttaaaaaactgaatttgccatcaact------------tctaagttttcgctaagagcaatctgaaagaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47587634 690 + 74645514 aattcttttagaaaataaaataaacttgaaaattgGAGTAAGTACCAAGCAGATCTGAAATACAAACCAGAGGAAATAAACAATGCTGTTAAAATTACAAGTTCAGTGGATGAGTCCAGGAACAGATTAAACCAGGATTATTGAAC-AAAATATAGCTCAGAGGAAATTTTCCAGAATGCAACTAAGTGACGAAGGAGGAAGTCAAG-AGGCATGAGGGCTAGAATTAGAAGGTCTAAATATGTCTAATCAGAGTTCCAGGAGAAGACATGAGAGAATAggaaaacattcaacaaaataaaaagtgagaattttatagaattgttaaaaaaaaaaaaaacccaaaaacccaaGTTCTCAGATTAAGGAGACCTAATGAATTTCaggcaaaaggaataaaaataaatc---actacaCACATTGAGGCAGAAAACCAGATAA-------TTACAAGCAGATAGAAAATAAATCACCAGCAAAGGAATGGTGGTTAGACTGATGGCTGACTCCTCAAAAGCAACAATGGACACTGGAAATGGAATAGAATCTTCAATGTGCTGGGAGGAAATAACTGCCATTCCAGAATTTTCTGACTCGGTAACATTATATTTGAAAGAGGATAAAATAAAGCCattttcaagatttaaaaaactgaatttgcCATCAACT------------TCTAAGTTTTCGCTAAGAGCAATCTGAAAGAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9854013 687 - 75148670 CATTCTTTTAGAAAATAAAATAAACTTGAAAATTGGAGTaagtaccaagcagatctgaaatacaaatcagaggaaataaacaatgccgttaaagttacaagtttagtggatgagtccaggaacagattaaaccaggattattgaac-aaaatgtggctctgaggaaattttccagaatgcaactaagtgacgaaggaggaagtcaag-aggcataagggctagaattagaaggtctaaatatgtctaatcagagttccaggagaagacatgagagaataggaaaacattcaacaaaataaaaagtgagaattttatagaattgtt---aaaaaaaaaaccccaaaaacccaagttctcagattaaggagacctaatgaatttcaggcaaaaggaataaaaataaatc---actacacacattgaggcagaaaaccagataa-------ttacaagcagatagaaaataaatcaccagcaaaggaatggtggttagactgatggctgactcctcaaaagcaacaatggacactggaaatggaatagaatcttcaatgtgctgggaggaaataactgccattccagaattttctgactcggtaacattatatttgaaagaggataaaataaagccattttcaagatttaaaaaactgaatttgccatcaact------------tctaagttttcgctaagagcaatctgaaagaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112699586 703 + 159171411 aattgttttagaaaa-aaaataaacttgaaaattggagcaagtaccaagcagatctgaaatacaaaccagaagaaataaataatgccattaaaatgacaagttcagtggatgggttcaagaacaggttaagccaggattattgaacaaaaatgtagctttgaggaaattttctggaacgcagctaaatgatgaaggaggaagtcaag-aggcatgaaggctggagttagaaggtttaaatatgtcccgtcagagtaccag-agaagacaggagagaataagaaaacattcaacaaaataaaaagtgagaagtttctagaattgtt-----taaaaaaaaa--gaaaccccaagttttcaggttaaggagatctaatgaattccagacaaaaggagtacaaataaatcacaactacacacattgaggcagaaaaccagataataaaatgttagaagcagatacaaag-aaatcaccaacaaaagaatggtggctagactgaaggctgactcctcaacagcaacaatggacaccggaaatggaatagaatcttaaatgtgctgggaggaaataactgccattccagaattttctgactcggtaacattatctttgaaggagggtaaaacaaagccattgtcaagattagaaaaactgaacttgccatcagttttcactaagagCTCTAAGTTTTCACTAAGAGCAATCTGAAAGAA i calJac3.chr5 C 0 I 387 e canFam3.chr9 39269383 198 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I a score=2008612.000000 s hg38.chr17_JH159146v1_alt 38894 670 + 278131 tgtgttttaagcagaaggaagatgattccagatgaaagttctgagatgcataaaagaattaaaataatgaacaaatagagtgctaagcatgcgaccaaatgtaaatgtaaagacaagtattggctataaaataatatatctattgagaagaaaaaacaatatggaattaaagtagatgagggctggaaggggatgaatggagttaaattgttctaaattgcgggactgtttaggaaaacagcaaacatacagattaactttagatattgacaggttaagaatgcatattaTATTTTCCacacagggacacatggcggagaacaacacacact-ggcacctgtggttg--gggggaaagcatcaggaagaatagctaatggacgctaggcttaatacctgggtgttgggatgatctgtgcagtaaaccaccgtggcacatgtttacctatgtaacaaaactgcacatcctgcacattta-cccctgaacttaaaataaaagttgaagaaaaaaaaGA-ATGCATATTATGTTTTCTAATTTTATGGTTTTGCCTTTCACATGATGGCTCTTACAATGATCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcctatagaaact-aattttgtacggcttgggcatttcaaatcaatga s panTro4.chr17 66155785 670 - 82630442 tgtgttttaagcagaaggaagatgattccagatgaaagttctgagatgcataaaagaattaaaataatgaacaaatagagtgctaagcgtgcgaccaaatgtaaatgtaaagacaagtattggctataaaataatatatctattgagaagaaaaaacaatatggaattaaagtagatgagggctggaaggggatgaatggagttaaattgttctaaattgcgggactgtttaggaaaacagcaaacatacagattaactttagatattgacaggttaagaatacatattatattttCCacacagggacacatggcggagaacaacacacact-ggcacctgtggttg--gggggaaagcatcaggaagaatagctaatggacgctaggcttaatacctgggtgttgggatgatctgtgcagtaaaccaccgtggcacgtgtttacctatgtaacaaaactgcacatcctgcacattta-cccctgaacttaaaataaaagttgaagaaaaaaaaGA-ATGCATATTATGTTTTCTAATTTTATGGTTTTGCCTTTCACATGATGGCTCTTACATTGATCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcctatagaaact-aattttgtacggcttgggcatttcaaatcaatga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24687625 670 - 73212453 tgtgttttaagcagaaggaagatgattccagatgaaaattctgagatgcataaaagaatgaaaataatgaacaaataaagtgctaagcatgcgaccaaatgtaaatgtaaagacaaatattggctataaaataatatatctattgagaagaaaaaacaatatggaattaaagtagatgagggctggaaggggatgaatggagttaaattgttctaaagtgcgggactgtttaggaaaactgcaaacatacatattaactttagatattgacaggttaagaatacatattatattttcCacacatggacacatggcggggaacaacacacact-ggcacctgtggttggcgggggaaagcatcaggaagaatagttaatggacgctaggcttaatacctgggtgttgggatgatctgtgcagtaaaccaccgtggcacacgtttacctatgtaacaaaactgcacatcctgcacatgta-cccctgaacttaaaatgaaagtcgaag-agaaaaaGA-ATGCATATTATGTTTTCTAA-TTTATGGTTTTGGCTTTCACATGATGACTCTTACATTGACCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcgtatagaaact-aattttatactgcttgggcatttcaaatcaatgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47907269 670 - 81552678 tgtgttttaagcagaaggaagatgattccagatgaaagttctgagatgcataaaagaatgaaaataatgaacaaataaagtgctaagcatgcgaccaaatgtaaatgtaaaggcaaatattggctataaaataatatatctattgagaagaaaaaacaatatggaattaaagtagatgagggctggaagaggatgaatggagttaaattgttctaaagtgcgggactgtttatgaaaacagcaaacatacagattaactttagatattgacaggttaagagtacatattaTGTTTTCCacacatggacacgtgacggggaataacacacgct-ggcatctgtggttg--gggggaaagcatcaggaagaatagctaatggatgctgggcttaatacctgggtgttgggatgatctgtgcagtaaaccactgtggcacacgtttgcctgtgtaacaaaactgcgcatcctgcacatgta-cccctgaacttaaaataaaagttgaaggaaaaaaaGA-ATGCATATTATGTTTTCTAATTTCATGGTTTTGCCTTTCACATGATGGCTCTTACATTGATCTGGaaataagccgttgaattagcacaaagagctcagaaacagatctgttgcatatagaaact-aattttgtactgcttaggcatttcaaatcaatgt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53020637 668 + 80904711 tgtattttaagcagaaggaagatgattccagatgaaagttctgacatgcataaaagaatgaaaataataaacaaataaggtgctaagcatgtgaccaaatgtaaatgtaaagacaaatattggctataaaataatttatctattgagaagaaaaaacaatatggaattaaactagatgaaagctggaaggggatgaatggagttgaattgttctaaagtgtgcaactgtttaggaaaacagcaaacatacagattaactttagatattgacaggttaagaatacatattacattttCCacacatggacacatggtggggaacaacacacactgggcacctgtggttg--gggggaaagcatcaggaagaatagctaatggacactgggcttaatacctgggtgttggaacgatctgtgcagtaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccccctgaact-----taaaagttgaaggaaaaaaaGA-ATGCATATTATGTTTTCTAATTTTATGGTTTTGCCTTTCACATGATGGCTGTTACATTGATCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcatatagaaactcaattttgtcctgcttgggcattacaaatcaacgt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52543344 673 + 80997621 tgtattttaagcagaaggaagatgattccagatgaaagttctgacatgcataaaagaatgaaaataataaacaaataaggtgctaagcatgtgaccaaatgtaaatgtaaagacaaatattggctataaaataatttatctattgagaagaaaaaacaatatggaattaaactagatgaaagctggaaggggatgaatggagttaaattgttctaaagtgtgcaactgtttaggaaaacagcaaacatacagattaactttagatattgacaggttaagaatacatattacattttCCacacatggacacatggtggggaacaacacacactgggcacctgtggttg--gggggaaagcatcaggaagaatagctaatggacactgggcttaatacctgggtgttggaacgatctgtgcactaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccccctgaacttaaaataaaagttgaagaaaaaaaaGA-ATGCATATTATGTTTTCTAATTTTATGGTTTTGCCTTTCACATGATGGCTGTTACATTGATCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcatatagaaactcaattttgtcctgcttgggcattacaaatcaacgt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47588324 673 + 74645514 TGTATTTTAAGCAGAAGGAAGATGATTCCAGATGAAAGTTCTGACAtgcataaaagaatgaaaataataaacaaataaggtGCTAAACATGTGACCAAATGTAAATGTAAAGACAAATATTggctataaaataatttatctattgagaagaaaaaacaatatgGAATTAAAGTAGATGAGAGCTGGAAGGGGATGAATGGAGTTAAATTGTTCTAAAGTGTGCAACTGTTTAGGAAAACAGCAAACATACAGATTAACTTTAGATATTGACAGGTTAAGAATACATATTACATTTtccacacatggacacatggtggggaacaacacacactgggcacCTGTGGTTG--GGGGaaaagcatcaggaagaatagctaatggatgctgggcttaatacctgggtgttGGAACGatctgtgcagtaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccccctgaacttaaaataaaagttgaagaaaaaaaaga-atgcatattatgttttctaattttatggtTTTGCCTTTCACATGATGGCTGTTACATTGATCTGGAAATAAGCCAGTGAATTAGCACAAAGAGCTCAGAAACAGATCTGTTGCATATAGAAACTCAATTTTGTCCTGCTTGGGCATTACAAATCAACGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9854700 673 - 75148670 tgtattttaagcagaaggaagatgattccagatgaaagttctgacatgcataaaagaatgaaaataataaacaaataaggtgctaagcatgtgaccaaatgtaaatgtaaagacaaatattggctataaaataatatatctattgagaagaaaaaacaatatggaattaaagtagatgagagctggaaggggatgaatggagttaaattgttctaaagtgtgcaactgtttaggaaaacagcaaacatacagattaactttagatattgacaggttaagaatacatattacattttCCacatatggacacatggtggagaataacacacactgggcacctgtggttg--gggggaaagcatcaggaagaatagctaatggacgctgggcttaatacctgggtgttggaacgatctgtgcagtaaaccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtaccccctgaacttaaaataaaagttgaagaaaaaaaaGA-ATGCATATTATGTTTTCTAATTTTATGGTTTTGCCTTTCACATGATGGCTGTTACATTGATCTGGaaataagccagtgaattagcacaaagagctcagaaacagatctgttgcatatagaaactcaattttgtcctgcttgggcattacaaatcaacat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112700676 664 + 159171411 tgtattttaagcagaaggaagatgattccagatgaacgttctgagatgcaaaaaagaatgagaataatgaacaaataaggtgctaagcatgtgaccaaatgcaaatgtaaagacaaatattggctataaaataatatatctattgagaagaaaaagcaatatggaattaaggtagatgagggctggaaggggatgaatgaagttaaattgttctaaagcacgtggctgttcaggaaaacagcaaatgtacagattaaattcagacattgacaggttaagaatacatattatattttcCacacatggacacatggtggggaacaacacacactgggcacctgtggttg--gggggaaagcttcaggaagaatagttaagggacgctgggcttaatacctgggtaacgggaggatctgtgcagtaaaccaccagggcccacgtttacctgtgtaactaacctgcacatcctgcatgtgta-cccctgaacttcaaataaaagtcaaagaaaaagaaaACATGCATACTATGTTTTCTAATTGTATGGTTTTGCCTTTCACATGATGGCTCCTGCATTTATCTGAaaa----ccagtgaattagcatgaagagctcagaaacagatctgttgtatgtgga-----aattttgtattgctttggcattacaaatcaatgt i calJac3.chr5 I 387 C 0 e canFam3.chr9 39269383 198 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I a score=400115.000000 s hg38.chr17_JH159146v1_alt 39564 120 + 278131 ggaaagaaatggagta-tcccatatttaacaaatggcagttgtatttctg-tctaaggcaaaatttacctaaaatataagaaaatgaattccagattcattaaagataaaaatgtgaaaagt s panTro4.chr17 66156455 120 - 82630442 ggaaagaaatggagta-tcccatatttaacaaatggaagttgtatttctg-tctaaggcaaaatttacctaaaatataggaaaatgagttccagattcattaaagataaaaatgtgaaaagt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24688295 120 - 73212453 ggaaagaaatggagta-tcccatatttaacaaatggaagttgtatttctg-tctaaggcaaaatttacctaaaatatatgaaaatgaattccagattcattaaagataaaaatgtgaaaagt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47907939 120 - 81552678 ggaaagaaatggagta-tcccacatttaacaaatggaagttgtatttctg-tctaaggcaaaatttacctaaaatatgtgaaagtgaattccagattcattaaagataaaaatgtgaaaagt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53021305 121 + 80904711 ggaaagaaatggagta-tcccatatttaacaaatggaaattgtatttctgttctaaggcaaaacttacctaaaatatatgaaaatgaattccagattcattaaagataaacatatgaaaagt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52544017 121 + 80997621 ggaaagaaatggagta-tcccatatttaacaaatggaaattgtatttctgttctaaggcaaaacttacctaaaatatatgaaaatgaattccagattcattaaagataaacatatgaaaagt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47588997 121 + 74645514 GGAAAGAAATGGAGTA-TCCCATATTTAACAAATGGAAATTGTATTTCTGTTCTAAGGCAAAACTTgcctaaaatatatgaaaatgaattcCAGATTCATTAaagataaacatatgaaaagt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9855373 121 - 75148670 ggaaagaaatggatta-tcccatatttaacaaatggaaattgtatttctgttctaaggcaaaacttacctaaaatatatgaaaatgaattccagattcattaaagataaacatatgaaaagt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112701340 117 + 159171411 gaaaagaaacagagta-tcccatatttaacaaatggaaattgta---ctg-tctgaggcaaaacttacataaaatatacacaaatgaattccaggtgcattaaagatataaatgtgaaaagt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39269581 115 - 61074082 GGAAAGGAATAAAGTATTTCCATATTTAAAAAATGAAAATTGTAGTTCAG-------GCAAAATATATAGTTAGTATACAAAAGTAAATTCCAGATTTATTAAATATATAAATGTAAAAGGT i canFam3.chr9 I 198 I 110 e mm10.chr11 99441775 5987 + 122082543 I a score=4095.000000 s hg38.chr17_JH159146v1_alt 39684 1 + 278131 t s panTro4.chr17 66156575 1 - 82630442 t i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24688415 1 - 73212453 t i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47908059 1 - 81552678 t i nomLeu3.chr19 C 0 I 314 s rheMac3.chr16 53021426 1 + 80904711 t i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52544138 1 + 80997621 t i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47589118 1 + 74645514 t i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9855494 1 - 75148670 t i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112701457 1 + 159171411 t i calJac3.chr5 C 0 C 0 s canFam3.chr9 39269806 1 - 61074082 T i canFam3.chr9 I 110 C 0 e mm10.chr11 99441775 5987 + 122082543 I a score=1212505.000000 s hg38.chr17_JH159146v1_alt 39685 358 + 278131 aaaaactatacaacatttagaagaaaacacagaataatatctctaggaattagagtaaaggagtatttttaaacaagacacaaaaagtgaaaactgtgaagtacaaaattgatactgatttagcaatttttattcattaaaatataccataattataatgaaaaaagcctcaaacagggagcagatatttagaagtcatgtaactgacaagcaattagtttccagaatatggaa--aattcctacaaatcaataagaaaaag-aaaagcatcccagtgagaaagtgggc-aaaatatgaatagatttgcagagaagaggaaagctgaatggcccattccacatctgccaatcggaaaaattt- s panTro4.chr17 66156576 358 - 82630442 aaaaactatacagcatttagaagaaaacacagaataatatctctaggaattagagtaaaggagtatttttaaacaagacacaaaaagtgaaaactgtgaaatacaaaattgatactgatttagcaatttttattcattaaaatgtaccataattataatgaaaaaagcctcaaacagggagcagatatttagaagtcatgtaactgacaagaaattagtttccagaatatggaa--aattcctacaaatcaataagaaaaag-aaaagcatcccagtgagaaagtgggc-aaaatatgaatagatttgcagagaagaggaaagctgaatggcccattccacatctgccaattggaaaaagtt- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24688416 353 - 73212453 aaaaactatacaacatttagaagaaaacacagaatagtatctctagaaat-----taaaggagtatttttaaacaagacacaaaaagtgaaaactgtgaagtacaaaattgatactgatttagctatttttattcattaaaatataccataattataatgaaaaaagcctcaaacaaggagcagatatttagaaatcatgtaactgacaagaaattagtttccagaatatggaa--aattgctacaaatcaataagaaaaag-aaaataatcccagtgagaaagtgggc-aaaatatgaatagatttgcagagaagaggaaagctgaatggcccattccacatctgccaatcagaaaaagtt- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47908374 358 - 81552678 aaaaactatacaacatttagaagaaaacacagaatactatctctaggaattagagcaaaggagtatttttaaacaagacacaaaaagtgaaaactgtgaagtacaaaattgataccgatttagcaatttttattcattaaaatataccataattataataaaaaaagcctcaaacagggagcagatatttagaaatcatgtaactgacaagaaattagtttccagaatatggaa--aattcctacaaatcaataagaaaaag-aaaagcatcccagtgagaaagtgggc-aaaatatgaatagatttgcagagaagaggaaagctgaatggcccattctacatctgccaatcggaaaaagtt- i nomLeu3.chr19 I 314 C 0 s rheMac3.chr16 53021427 357 + 80904711 aaaacctatacaacatgtagaagaaaacacagaataatatctctaggaattagagtaaaggagtatttct-aacaagacacaaaaagtgaaaactgtgaagtacaaaattgataccgatttagcaatttttattcattaaaatataccataattataatgaaaaaagtctcaaacagggagcagatatttagaaatcatgtaactgtcaagaaattagtttccggaatatggaa--aatccctacaaatcagtaagaaaaag-aaaaacatcccagtgagaaagtgggc-aaaatatgaatagatttgcagaaacgaggaaagctgaatggccCGTTCCACATCCGCCAATTGGAAAAAGTT- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52544139 357 + 80997621 aaaacctatacaacatgtagaagaaaacacagaataatatctctaggaattagagtaaaggagtatttct-aacaagacacaaaaagtgaaaactgtgaagtacaaaattgataccgatttagcaatttttattcattaaaatataccataattataatgaaaaaagtctcaaacagggagcagatatttagaaatcatgtaactgtcaagaaattagtttccggaatatggaa--aatccctacaaatcagtaagaaaaag-aaaaacatcccagtgagaaagtgggc-aaaatatgaatagatttgcagaaacgaggaaagctgaatggcccgttccacatccgccaattggaaaaagtt- i macFas5.chr16 C 0 I 309 s papAnu2.chr16 47589119 356 + 74645514 aAAACCTATACAACatgtagaagaaaacacagaataatatCTCTAGGAATTAGAGTAAAGGAGTATTTCT-AACAAGACACAAAAAGTGAAAACTGTGAAGTACAAAACTGATACCGATTTAgcaatttttattcattaaaatataccataattataatgaaaaaagtCTCAAACAGGGAGCAGATATTTAGAAATCATGTAACTGTCAAGAAATTAGTTTCCGGAATATGGAA--AATccctacaaatcagtaag-aaaag-aaaaacatcccaGTGAGAAAGTGGGC-AAAATATGAATAGATTTGCAGAAACGAGGAAAGCTGAATGGCCCGTTCCACATCCGCCAActggaaaaagtt- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9855495 356 - 75148670 aaaaactatacagcatgtagaagaaaacacagaataatatctctaggaattagagtaaaggagtatttct-aacaagacacaaaaagtgaagactgtgaagtacaaaattaataccgatttagcaatttttattcattaaaatataccataattacaatgaaaaaa-cctcaaacagggagcaggtatttagaaattatgtaactgtcaagaaattagtttccagaatatggaa--aatccctacaaatcagtaagaaaaag-aaaaacatcccagtgagaaagtgggc-aaaatatgaatagttgtacagaaatgaggaaagatgaatggccCGTTCCACATCTGCcaactggaaaaagtt- i chlSab2.chr16 C 0 I 307 s calJac3.chr5 112701458 355 + 159171411 aaaaaccatacaacatttagaagaaa--agagaataatacctccaggaattagagtaaaggagtattttgaaacaagacacaaaaagtgaaaactatgaagtacaaaattgatactgatttagcaatttttatttattaaactataccataattataatggaaaaagct---aacagggagcagatatttagaaatcatgtaactgacaagaaatcagtttccagaatacggaaagaagccctacaaatcaataagaaaaag-aaaaacatcccagtgagaaagtggac-aaaatatgaatagatttgcagaaaagaagagagctgaatggcccattccatacctgccaattggaaaaagtt- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39269807 348 - 61074082 Aaaaacaatacattgtttagataaaaatgcagaataatatctccaagaaccagggtaaaggaatatttcttaaacagacacaaaaagttcaaactatggtat------------ttaacttaacaatttttattcaataaaggacttcataattataaagggaaagtccccaaacagtgagcagttacttataaaacatgtaactgacaaggaattagtttccagaatatgcaaagaatacttacaaataaatataaaagagaaaaaaaaacccagtgagaaggtgggcaaaaatatgaatgaatgcccagaa---agcaaagctgggtggcccatttcacacctgtcaattggaataaattt i canFam3.chr9 C 0 C 0 e mm10.chr11 99441775 5987 + 122082543 I a score=44457.000000 s hg38.chr17_JH159146v1_alt 40043 12 + 278131 aaaaagttggac s panTro4.chr17 66156934 12 - 82630442 aaaaagttggac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24688769 12 - 73212453 aaaaagttggat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47908732 12 - 81552678 aaaaagttggac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53021784 12 + 80904711 AAAAAGTTGGAC i rheMac3.chr16 C 0 I 313 s macFas5.chr16 52544805 12 + 80997621 aaaaagttggat i macFas5.chr16 I 309 C 0 s papAnu2.chr16 47589475 12 + 74645514 aaaaagttggaC i papAnu2.chr16 C 0 I 309 s chlSab2.chr16 9856158 12 - 75148670 aaaaagttggac i chlSab2.chr16 I 307 C 0 s calJac3.chr5 112701813 12 + 159171411 aaaaagttggat i calJac3.chr5 C 0 C 0 s canFam3.chr9 39270155 12 - 61074082 aaaaaaatggat i canFam3.chr9 C 0 C 0 e mm10.chr11 99441775 5987 + 122082543 I a score=1356078.000000 s hg38.chr17_JH159146v1_alt 40055 427 + 278131 gatagcaag-gtggccgaggggaattccagtccattcatgttagctgtataagtaggtacaatcactttgtaaaatagtttgagattatcttagaaggctgaacattcatatagccatcactcagcaa-acaattcctaggtgtacacttcagagaaactctt---gtaaatattgaacgatagacatgtacaagaatattcacagaagcattgttcatattaacaacacacacacgtactaacatacacacacac----aacagaaaactggaaacaactcaaatgttaag----agtagaatgaataaatgcgttgatacatgttcgtacagtgggatgctatgcaacagctaaaaatggataaattagctgggcgc---tgtggctcatgcctgtaatcccagcactttgggagcctgagttgggtagatcacttgaggc s panTro4.chr17 66156946 427 - 82630442 gatagcaag-gtggccgaggggaattccaatccattcatgttagttgtataagtaggtacaatcactttgtaaaatagtttgagattatctgagaaggctgaacattcatatagccatcactcagcaa-acaattcctaggtgtacacttcagagaaactctt---gtaaatattgaacgatagacatgtacaagaatattcacagaagcattgttcatattaacaacacacacacgtactaacatacacacacac----aacagaaaactggaaacaactcaaatgttaat----agtagaatgaataaatgcgttgatacatgttcgtacagtgggatgctatgcaacagctaaaaatggataaattagctgggtgc---tgtggctcatgcctgtaatcccagcactttgggagcctgagtcgggtagatcacttgaggc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24688781 432 - 73212453 gatagcaagtgtggccgaggggaattccaatccattcatgttagctgtataaataggtacaatcactttgtaaaatagtttgagattatcttagaaggctgaacattcgtatagccatcactcagcaa-accattcctaggtgtacacttcagagaaactctt---gtaaatattgaacgatagacatgtacaagaatattcacagaagcattgttcatattaacaacacacacacgtactaacatacacacacacaggaaacagaaaactggaaacaactcaaatgttaat----agtagaatgaataaatgcattgatacatgttcatacagtaggatgctatgcaacagctaaaaatggataaattagctgggcgc---ggtggctcatgcctgtaatcccagcactttgggagcctgagttgggtagatcacttgaggc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47908744 432 - 81552678 gatagcaagtgtggccaaggggaattccaatccattcatgttagctgtataaataggtacaatcactttgtaaaatagtttgagattatcttagaaggttgaacattcatatagccatcactcagcaa-accattcctaggtgtacacttcagagaaactctt---gtaaatactgaacgatagacatgtacaagaatattcacagaagcattgttcatattaacaacacacacacgtactaacatacacacacacaagaaacagaaaactggaaacaactcaaatgttaat----agtagaatgaataaatgcgttgatacatgttcatacagtgggatgctatgcaacagctaaaaatggataaattagctgggcgc---ggtggctcatgcctgtaatcccagcactttgggagcctgagtcgggtagatcacttgaggc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53022109 430 + 80904711 gatagcaagtatgactgaggggaattccaatccattgatgttagctgtataaataggtacaatcactttgtaaaatagtttgagattatgttagaaggctgaatattcacataaccgtcactcagcaa-accattcctaggtattcacttcagagaaactctt---ataagtattgaatgatagacatgtacaagaatattcacagaaccattgttcatattaataacacacgcacgtactaacacacacacacaa--gaaacagaaaactggaaacaactcaaatgttaat----agtagaatgaataaatgcattcatacatgttcatacagtgggatgctatgcaacagttaaaaatggataaattagctgggcgt---ggtggctcatgccggtaatcccagcagtttgggagcctgagttgggtagatcacttgaggc i rheMac3.chr16 I 313 C 0 s macFas5.chr16 52544817 430 + 80997621 gatagcaagtatgactgaggggaattccaatccattgatgttagctgtataaataggtacaatcactttgtaaaatagtttgagattatgttagaaggctgaatattcacataaccgtcactcagcaa-accattcctaggtattcacttcagagaaactctt---ataagtattgaatgatagacatgtacaagaatattcacagaaccattgttcatattaataacacacgcatgtactaacacacacacacaa--gaaacagaaaactggaaacaactcaaatgttaat----agtagaatgaataaatgcattcatacatgttcatacagtgggatgctatgcaacagttaaaaatggataaattagctgggcgt---ggtggctcatgccagtaatcccagcagtttgggagcctgagttgggtagatcacttgaggc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47589796 430 + 74645514 gaTAGCAAGTATGACTGAGGGGAATTCCAATCCATTGATGTTAGCTGTATAAATAGGTACAATCACTTTGTAAAATAGTTTGAGATTATGTTAGAAGGCTGAATATTCACATAACCGTCACTCAGCAA-ACCATTCCTAGGTGTTCACTTCAGAGAAACTCTT---ATAAGTATTGAATGATAGACATGTACAAGAATATTCACAGAACCATTGTTCATATTAATAACACACGCACgtactaacacacacacacaa--gaaacagaaaactggaaacaactcaaatgttagt----agtagaatgaataaatgcattcaTACACGTTCATACAGTGGGATGCTATGCAACagttaaaaatggataaattagctgggcgt---ggtggctcatgccggtaatcccagcagtttgggagcctgagttgggtagatcacttgaggc i papAnu2.chr16 I 309 C 0 s chlSab2.chr16 9856170 428 - 75148670 gatagcaagtatgactgaggggaattccaatccattgatgttagctgtataaataggtacaatcactttgtaaaatagtttgagattatgttagaaggctgaatattcacgtagccatcactcagcaa-actattcctaggtg-----ttcagagaaactcataaaataagtattgaatgatagacatgtacaagaatattcacagaaccatggttcatattaataacacacacacgtactaacatacacacacaa--gaaacagaaaactggaaacaactcaaatgttaat----agcagaatgaataaatgcattcatacatgttcatacagtgggatgctatgcaacagttaaaaatggataaattagctgggcgt---ggtggctcatgccggtaatcccagcactttgggagcctgagttgggtagatcacttgaggc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112701825 431 + 159171411 actagcaagtctggctgaggggaattctcatccattgatgttaggtgtataaataggtacaatcaacttgtaaagtagtttgacattatcttagaaggttaagcattcacatagccatcactcagcaa-accattcctaggtatacacttcagagaaactctt---gtaaatattgaccagtagacatgtgcaagaatattcgcagaagcatcgttcatattaac-acacacacacgtactaacatacacacacacaagaaacagaaaactggaaacagctcaaatgctaat----agtagaatgaataaatgcattgatatatgttcatacagtgggatactctgcaacagttaaaaatggataaattagctgggcgt---ggtggcttacacctgcaatcccagcactttgggaggctgaagcgtgtacatcacttgaggc i calJac3.chr5 C 0 C 0 s canFam3.chr9 39270167 338 - 61074082 ----------------gagggaaattcatatacactagtagtggctg-gtaaattggtacaattgctttggaaaacagtttgatctgttatccaaacggggagcatgcacatatctatcatccagtaattccattctcaggaatatattccagagaaa--------gt-------------------tgtacaaggatattcacagaagtgttgttcgta----------------atactaatacacatacacac----------actcttgaaacaacctcaatgctaatcaagagtagaaggaataaatacgttgacagatattcacaccatggtatatgatgcagcagttttaaatggatgaagtag--ggatgcctgggtggctcag---------------------------------gggttgaacctttgagcc i canFam3.chr9 C 0 I 123 e mm10.chr11 99441775 5987 + 122082543 I a score=616380.000000 s hg38.chr17_JH159146v1_alt 40482 207 + 278131 gaggagttcgagaccagcctggccaatatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtatagtggtgggcgcctgtgatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcatgctactgcactccagcctgggcaaaagagccaggctctg s panTro4.chr17 66157373 207 - 82630442 gaggagtttgagaccagcctggccaatatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtatagtggtgggcgcctgtgatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcatgctactgcactccagcctgggcaaaagagccaggctctg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24689213 207 - 73212453 caggagttcgagaccagcctggccaatatggcgaaaccccgtctctactaaaaatacaaaaattagctgggtgtagtggtgggcgcctgtgatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcgtgctactgcactccagcctgggcaaaagagccaggctctg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47909176 207 - 81552678 caggagttcgagaccagcctggccaatatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtatagtggtgggcgcctgtgatcccagctattcgggaagctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagcgagctgagattgtgctactgcactccagcctgggcaaaagagccaggctctg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53022539 207 + 80904711 caggagtttgagaccagcctggccaatatggtgaaacccagtctctactaaaaatacaaaaattagctgggcatagtggtgggcgcctgtgattccagctattcgggaagctgaggtaggagaatcacctgaacccaggaggtgcaggttgcagtgagccaagatcgtgccactgcactccaacctgggcgacagagccaggctctg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52545247 207 + 80997621 caggagtttgagaccagcctggccaatatggtgaaacccagtctctactaaaaatacaaaaattagctgggcatagtggtgggcgcctgtgattccagctattcgggaagctgaggtaggagaatcacttgaacccaggaggtgcaggttgcagtgagccaagatcgtgccactgcactccaacctgggcgacagagccaggctctg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47590226 207 + 74645514 caggagtttgagaccagcctggccaatatggtgaaacccagtctctactaaaaatacaaaaattagctgggcatagtggtgggcgcctgtgattccagctattcgggaagctgaggtaggagaatcacttgaacccaggaggtgcgggttgcagtgagccaagatcgtgccactgcactccaacctgggcgacagagccaggctctg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9856598 207 - 75148670 caggagtttgagatcagcctggccaatatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatagtggtgggtgcctgtgatcccagccatttgggaagctgaggtaggagaatcgcttgaacccaggaggtgcaggttgcagtgagccaagattgtgccactgcactccaacttgggcgacagagccaggccctg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112702256 191 + 159171411 catgagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaattacaaaaatcagctgggcattgtggtgggtgcctgtgattccagctatttgggaagctgaggcaggagggtcgcttgaaccaaggaggtggcggttgcagtgagctgagattgcaccacggcagcccagact----------------ctctc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39270505 123 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I a score=1571590.000000 s hg38.chr17_JH159146v1_alt 40689 524 + 278131 cct------------aaaaaaa----aaaataaaaaaaaataaaaaataaaaataaaaaaaaga----taaattacattattgacatggataaatattaaaaaacataatgct--------gaaaaaag----acaacagaatccatcca----gattttattgatatatagtataaaaacaggcaaaacgaaataatgtatgcttaagagatatacatataGATAATGTAGATTGCAAATGATGGTCACAGATTCCTCCTGTCTCT-GATGCACACTCCTTTGcaagtcctttcagagtctgaggggcatctagaccatttcca-atttttgaagctcctggtatattaaacaattgaaaa-------------------aaatttaaag---------------------------tgtttatatttcctttacattaccatttgcaacacaaaa-tctcataatacaataaacct-------gtaccaatcacaagatttatttaaaaaata------ctaacttattttagtgtactataggctacgtggtccagtgtgggggcatagtttcaaCggatgagatggatatcttaatcgtgatcctcctgcgtcggctt s panTro4.chr17 66157580 500 - 82630442 cct------------aaagaag----aaaa------------------------aaaaaaaaga----taaattacattattgacatggataaatatttaaaaacataatgct--------gaaaaaag----acaacagaatccatcca----gattttattgatatatagtataaaaacaggcaaaacgaaataatgtatgcttaagagatatacatatAGATAATGTAGATTGCAAATGATGGTCACAGATTCCTCCTGTCTCT-GATGCACACTCCTTTGcaagtcctttcagagtttgaggggcatctagaccatttcca-atttttgaagctcctggtatattaaacaattgaaaa-------------------aaatttaaag---------------------------tgtttatatttcctttacattaccatttgcaacacaaaa-tctcataatacaataaacct-------gtaccaatcacaagatttatttaaaaaata------ctaacttattttagtgtactataggctacgtggtccagtGTGggggcatagttttaacggatgagatggatatcttaatcgtgatcctcctgcatcagctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24689420 494 - 73212453 cct------------aaaaaa---------------------------------aaaaaaaaca----taaattacattattgacatggataaatattaaaaaacataatgct--------gaaagaag----acaacagaatccatcca----gattttattgatata-aatataaaaacaggcaaaacgaaataatgtatgcttaagagatatacatatagataatGTAGATTGCAAATGATGGTCGCAGATTCCTCCTGTCTCT-GATGCACACTCCTTTGcaagtcctttcaggatctgaggggcatctagaccatttcca-atttttgaagctcctggtatattaaacaattgaaaa-------------------atatttaaag---------------------------tgtttatatttcctttacattaccatttgcaacacaaaa-tctcatagtacaataaacct-------gtaccaatcacaagatttatttaaaaaata------ctaacttattttagtgtactataggctacgtggtccagtGTGggggcatagttttaactgatgagatggatatcttaatcgtgatcctcctgcatcggctt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47909383 519 - 81552678 cct------------aaaaaaaccccaaaaaacaaaaaaaaaaca---------aaaaaaaaca----taaattacattattgacatggataaatattaaaaaacataatgct--------gaaagaag----acaacagaatccatcca----gattttattgatatatagtataaaaacaggcaaaatgaaataatgtatgcttaagagatatacatatAGATAATGTAGATTGCAAATGATGGTCACAGATTCCTTCTGTCTCT-GATGCACACTCCTTTGcaagtcctttcagggtttgaggggcatctagaccatttcca-atttttgaagctcctggtatattaaataattgaaaa-------------------atatttaaag---------------------------tgtttatatttcctttacattaccatttgcaacacaaaa-tctcgtaatacaataaacct-------gtaccaatcacaagatttatttaaaaaata------ctaacttattttagtgtactataggctacgtggtccagtgtaggggcatagttttaactgatgagatggatatcttaatcgtgatcctcctgcatcagctt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53022746 492 + 80904711 cct-------------------------ta------------------------aaaaaaaaaa----agaattacattattgacatggataaatattaaaaaacataatgct--------gaaagaag----acaacagaatccatcca----gattttattgatatatagtataaaaacaggcaaaatgaaataatgtatgcttaagagatacacatataGATAATGTAGATTGCAAATGATGGTCACAGATTCCTCCTGTCTCTGGATGCACACTCCTTTGcaagtcctttcagggtttgaggggcatctagaccatttcca-tcttttgaagctcctggtatattaaacaattgaaaa-------------------atATTTAAAG---------------------------TCTTTATATTTCCTTTACATTGCCATTTGCAACACAAAA-TCTCCTAATACAATAAACCT-------GTACCAATAACAAGATTTATTTTAAAAATG------CTAACTTATTTTAGTGTACTATAGGCTACGTGGTCTGGTGTGAGGGCATAGTTTTAACTGATGAGATGGATATCTTAATTGTGATCCTCCTGCATCGGCTT i rheMac3.chr16 C 0 I 10 s macFas5.chr16 52545454 492 + 80997621 cct-------------------------ta------------------------aaaaaaaaaa----agaattacattattgacatggataaatattaaaaaacataatgct--------gaaagaag----acaacagaatccatcca----gattttattgatatatagtataaaaacaggcaaaatgaaataatgtatgcttaagagatacacatataGATAATGTAGATTGCAAATGATGGTCACAGATTCCTCCTGTCTCTAGATGCACACTCCTTTGcaagtcctttcagggtttgaggggcatctagaccatttcca-tcttttgaagctcctggtatattaaacaattgaaaa-------------------atatttaaag---------------------------tctttatatttcctttacattgccatttgcaacacaaaa-tctcctaatacaataaacct-------gtaccaataacaagatttattttaaaaatg------ctaacttattttagtgtactataggctacgtggtctggtgtgagggcatagttttaactgatgagatggatatcttAATTgtgatcctcctgcatcggctt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47590433 500 + 74645514 cct------------aaaaaa-----aaaa------------------------aaaaaaaaaa----agaattacattatTGATAtggataaatattaaaaaacataatGCT--------GAAAGAAG----ACAACAGAATCCATCCA----GATTTTATTGATATATagtataaaaacaggcaaaatgaaataatgtatgctTAAGAGATACACATATAGATAATGTAGATTGCAAATGATGGTCACAGATTCCTCCTGTCTCTGGATGCACACTCCTTTGCAAGTCCTTTCAGGGTTTGAGGGGCATCTAGACCATTTCCA-TCTTTTGAAGCTCCTGGTATATTaaacaattgaaaa-------------------atatttaaag---------------------------tcttTATATTTCCTTTACATTGCCATTTGCAACACAAAA-TCTCCTAATACAATAAACCT-------GTACCAATaacaagatttattttaaaaatg------ctaacttATTTTAGTGTACTATAGGCTACATGGTCTGGTGTGAGGGCATAGTTTTAACTGATGAGATGGATATCTTAattgtgatcctcctgcatcggctt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9856805 509 - 75148670 cctt---aaaaaaaaaaaaaa-----aaaa------------------------aaaaaaaaaa----agaattacattattgacatggataaatattaaaaaacataatgct--------gaaagaag----acaacagaatccatcca----gattttattgatatatagtataaaaacgggcaaaatgaaataatgtaggcttaagagatacacatatagataaTGTAGATTGCAAATGATGGTCACAGATTCCTTCTGTCTCTGGATGTATACTCCTTTGcaagtcctttcagggtttgaggggcatctagaccatttcca-tcttttgaagcttctggtatattaaacaattgaaaa-------------------atatttaaaa---------------------------tgtttatatttcctttacattgccatttgcaacacaaaa-tctcctaacacaataaacct-------gtaccaataacaagatttatttaaaaaatg------ctaatttattttagtgtactataggctacaagttccggtGTGAGAGcatagttttaactgatgagatggatatcttaattgtgatcctcctgcatcggctt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112702447 521 + 159171411 tca------------aaaaaa-----aaaa------------------------aaaaaaaaga----taaattacactatcaacatggataaatattaaaaagcataattttgaatgaaagaaacaag----acaacaga----atcca----gattttattgatatatagtac-aaaacaggcaaaactaaataatatatgcttaagagataaacatataGATAACAGAGATTGCAAACAATGGTCACAGCTTCCTCCTGTCTCTGGATGCACACTCCTTTGcaagtcctttcagggtttgaggggcatctagaccatttcca-ttttttgaagttcctggtatattaaacaattgaaaaaaatagaggaaccaaaattatatttaaag---------------------------tgtttatatttcctttacgttaccactttcaacacagaa-tctcatgatacaataaacct-------gtaccaatcacaagatttattttaaaaatg------ccaacttattttagactactataggctacatggtcca-tgtgggggcacagttttaaCTGGCGAGGTGGATATCTCAATCCtgattctcctgcatcgactt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39270628 530 - 61074082 ---catgaataaataaataaaatcttaaaa------------------------aaaattaaaatgggtgaaatacattcttaacatggattaatttaaaaaaagtgtgtagt--------gaaagaaatgacacaaaataatttagccaagtcaattcaactgatgtgaattataaaaacaggcaaaattaaataatgtatgattaaggggtatacataAAGTG---GCAGATTACAAACAATGGTCACAGAATCGCCCTGAAGCTGTAAACATACCCCTTTGcaagccctgttagagtttgaggggcatttggaccatgtatatttttttgaggctcctaatatattaaacagatgaaaa-------------------aaatccaaaatagggtagccaaaaacatggtaatgtttatttttattttctacacattaccattttcaacacaaaagtattatgatac--tttaccttatgttggtatcaat-atgagattta--taaaaaatgcccactctcacttattttagtgcattgtaggctgtgtgatccagtgctggg--acagttttgactggcgagacgg---tctt------------------------- i canFam3.chr9 I 123 C 0 e mm10.chr11 99441775 5987 + 122082543 I a score=32629.000000 s hg38.chr17_JH159146v1_alt 41213 18 + 278131 cccaaaatgttgtgagta s panTro4.chr17 66158080 18 - 82630442 cccaaaatgttgtgagta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24689914 18 - 73212453 cccaaaatgttgtgatta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47909902 15 - 81552678 cccaaaa---tgtgatta i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52545946 18 + 80997621 accaaaatgttgggatta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47590933 18 + 74645514 accaaaatgttgggatta i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9857314 18 - 75148670 accaaaatgttgggatta i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112702968 18 + 159171411 cccaaaatgttgagatta i calJac3.chr5 C 0 C 0 e canFam3.chr9 39271158 0 - 61074082 C e mm10.chr11 99441775 5987 + 122082543 I e rheMac3.chr16 53023238 10 + 80904711 I a score=1024927.000000 s hg38.chr17_JH159146v1_alt 41231 319 + 278131 caagtgtgagccactgtgcctagccAAGATGGATATAATCTTTTCATCCCAGAGGTGACGTTTGAAACCAGATAGGGCTGCATTTGGATTTAACATCCTAAATCTCTGACTGGGAAGCCACAGGCTCAACGGTCCTCTTCACCC-CTGCAATTGGCTCCGTATCCGTGTTATTTTGCCCATGTCCAGTGTTATGCCA--AGGACAAGTGAGTACTTATTTTACACAAGCTTGACTAAGAGAGAGC---CCAACTGAATTCCTCCCAAAACAGAAGAATAATTTGTCACCAAGACTAATTCTAGTTCCTACCTCTAGAATCATAGT s panTro4.chr17 66158098 319 - 82630442 caagtgtgagccactgtgcctagccAAGATGGATATAATCTTTTCATCCCAGAGGTGATGTCTGAAACCAGATAGGGCTGCATTTGGATTTAACATCCTAAATCTCTGACTGGGAAGCCACAGGCTCAACGGTCCTCTTCACCC-CTGCAATTGGCTCCGTATCCGTGTTATTTTGCCAATGTCCAGTGTTATGCCA--AGGACAAGTGAGTACTTTTTTTACACAAGCTTGACTAAGAGAGAGC---CCAACTGAATTCCTCCCAAAACAGAAGAATAATTTGTCACCAAGACTAATTCTAGTTCCTACCTCTAGAATCATAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24689932 319 - 73212453 caagtgtgagccactgtgcccagccAAGATGGATATAATCTTTTCATCCCGGAGGTGATGTCTGAAACCAGATAGGGCTGCATTTGGATTTAACATCCTAAATCTCTGACTGGGACGCCACAGGCTCAATGGTCCTCTTCACCC-CTGCGATTGGCTCCGTATCCGTGTTATTTTGCCAATGTCCAGTGTTATGCCA--AGGACAAGTGGGTACTTATTTTACACAAGCTTGACTAAGAGAGAGG---CCAACTGAATTCCTCCCAAAACAGAAGAATAATTTGTCACCAAGACTAATTCTAGTTCCTACCTCTAGAATCATAGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47909917 319 - 81552678 caagtgtgagccacggtgcccagccAAGATGGATATAATCTTTTCATCCCGGAGGTGACGTCTGAAACCAGATAGGGCTGCATTTGGATTTAACATCCTAAATCTCTGACTGGGAAGCCACAGGCTCAATGGTCCTCTTCACCC-CTGCGATTGGCTCCGTATCCGTGTTATTTTGCCAATGTCCAGTGTTATGCCA--AGGACAAGTGAGTACTTATTTTACACAAGCTTGACTAAGAGGGAGC---CCAACTGAATTCCTCCCAAAACAGAGGAATAATTTGTCACCAAGACTAATTCTAGTTCTTACCTCTAGAATCATAGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53023248 315 + 80904711 CAAGCATGAGCCAGTGTGCCCGGCCAAGATGGATATAATC-TTTCATCCTAGAGGGGACGTCTGAAACCAGATGGGGCTGCATTCGGATTCAACATCTTAAATCTCTGACTGGGAAACCAGGGGCTCAATGG---TCTTCACCC-CTGTGATTGGCTCTGTATCTGTGTTATTTTGCCAATATCCCGTGTTATGcca--aggacaaatgagtacttattttacacaagcttgactaagagagagc---tcaactgaattcttcccaaaacagaggaataatttgtcaccaagacaaattctagttcctaccctTGGAATCATAGT i rheMac3.chr16 I 10 C 0 s macFas5.chr16 52545964 319 + 80997621 caagcatgagccagtgtgcctggccAAGATGGATATAATCTTTTCATCCTAGAGGGGACGTCTGAAACCAGATGGGGCTGCATTCGGATTCAACATCTTAAATCTCTGACTGGGAAACCAGGGGCTCAATGGTCCTCTTCACCC-CTGTGATTGGCTCTGTATCTTTGTTATTTTGCCAATATCCCATGTTATGCCA--AGGACAAATGAGTACTTATTTTACACAAGCTTGACTAAGAGAGAGC---TCAACTGAATTCTTCCCAAAACAGAGGAATAATTTGTCACCAAGACAAATTCTAGTTCCTACCCCTGGAATCATAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47590951 319 + 74645514 caagcatgagccagtgtgcccggccAAGATGGATATAATCTTTTCATCCTAGAGGGGACGTCTGAAACCAGATAGGGCTGCATTTGGATTCAACATCTTAAATCTCTGACTGGGAAACCAGGGGCTCAATGGTCCTCTTCACCC-CTGTGATTGGCTCTGTATCTGTGTTATTTTGCCAATATCCCGTGTTATGCCA--AGGACAAATGAGTACTTATTTTACACAAGCTTGACTAAGAGAGAGC---TCAACTGAATTCTTCCCAAAACAGAGGAATAATTTGTCACCAAGACAAATTCTAGTTCCTACCCTTGGAATCATAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9857332 315 - 75148670 caagcatgagccagtgtgcccggccAAGATGGATATAATCTTTTCATCCTGGAGGGGACGTCTGAAACCAGATAGGGCTGCATTCGGATTCAACATCTTAAATCTCTGACTGGGAAACCACAGGCTCAATGGTCCTCTTTACCC-CTGCGATTGGCTCCGTATCCGTGTTATTTTGCCAATATCCAGTGTTATGCCA--AGGACAAATGAGTACTTATTTTACACAGGCTTGACTA----AGAGC---CCAACTGAATTCCTCCCAAAACAGAGGAATAATTTGTCACCAAGACAAATTCTAGTTCCTACCCCTGGAATCATAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112702986 315 + 159171411 caagtgtgagccactgcacccagccAAGATGGAT---ATCTTTTTATCCTGGAGGTGACGTCTGAAACCAGATAGGGCTGCATTTGGATTTAACATCCTAAATCTCTGACTGGGAAGCCACAGGCCCAATGGTCCTTTTCACCCACTGCGATTGGCTCCATGTCCGGGTTATTTTACCAGCATCTGGTGTTACGCCA--AGGACAAATGAGGACTTATCTTACACCAGCTTGACTAAGAGAGAGT---CCCAATGAATCCCTTCCAAAACAG--GAATAATTTGTCGCCAAGGCTAATTCTAGTTTCTACCCTTAGAATCATAGT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39271158 276 - 61074082 ---------------------------------------ctttcaatcctggaagtgatctctgaaaccaggcatcaccgtatttgaatttaacctccaaagtctctgcatgggaagccataagccgaatggccctcttc-----ctgcaattggcccCATGTCTGGATTATTTCACCAAAGTTTGATGTTATACCATGATAGCAGATAGGTTCTTATTTTATATTAGCTTCAGTAAGTAAGAGTCAACCAACCAAATTCCTCCCAAAAT---GGAATAATTTTCCCCT--GGCAAATTCCAGTTTCTGTCCTTAGAATCACATT i canFam3.chr9 C 0 I 230 e mm10.chr11 99441775 5987 + 122082543 I a score=2887371.000000 s hg38.chr17_JH159146v1_alt 41550 899 + 278131 AAAGAAGTTACTGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCATCATTA--GTTCATGAACGTTGAGGTCCAGTCTCAAACACCTACCT-AAAAATGCAAATCTGATTATTTCACTTCTGTAAAAAACTGACAACAGT--ATGTAGTCAAGTCCAATATACAGCTCTCAAAGATCTAGCTCCTGCCTACCTTTTTAGA-CCCCCTGGTCACCC-CTCCATGCCTCAGATGGCACACTCCAGTAACACACACCACTGAT--TCCTCCATTCCATGCTTCTGTATACTCCATCCCCTTCTCTTCTTCTGCatgtcatctcttccaggaagccatccctgtgctctcaaATTCCTTCCCTCCaggatgaccaactgtcctggtttgcccaggacacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcacccCGTTCATCTCTCCTGTGCATGTCTCTCTTTCTTGGGTATAGTGTGTGCATGGGCTTTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTACCCCATGGCAAGGGGGACACTGGGACAGGACtgggagatggtttgggagatggtttacttaacataatgacctccagttccatccatgttgttgcaaatgacagaatctcattGCAAAGGGAAACATGGTG----TGTTTGTGGAAATGCCAAGTTTGTAGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGAGTGCATAATAAGGTACTGATAAGGTACGTAGGAAAGGTTTTCTCCAGTATTATTGA---------------tttt s panTro4.chr17 66158417 909 - 82630442 AAAGAAGTTACTGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCATCATTA--GTTCATGAACGTTGAGGTCCAGTCTCAAACACCTACCT-AAAAATGCAAATCTGATTATTTCACTTCTGTGAAAGACTGACAACAGT--ATGTAGTCAAGTCCAATATACAGCTCTCAAAGATCTAGCTCCTGCCTACCTTTTTAGA-CCCCCTGGTCAACC-CTCCATGCCTCAGATGGCACACTCCAGTAACACACACCACTGAT--TCCTCCATTCCATACTTTTGTATACTCCATCCCCTTCTCTTCTTCTGCatgtcatctcttccaggaagccatccctgtgctctcaaATTCCTTCCCTCCaggatgaccaactgtcctggtttgcccaggacacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcacccCGTTCATCTCTCCTGTGCACATCTCTCTTTCTTGGGTATAGTGTGTGCATGGGCTTTGGTCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTACCCCATGGCAAGGGGGACACTGGGACAGGACtgggagatggtttgggagatggtttacttaacataatgacctccagttccatccatgttgttgcaaatgacagaatctcattGCAAAGGGAAACATGGTG----TGTTTGTGGAAATGCCAAGTTTGTAGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGATTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTGATAAGGTACATAGGAAAGGTTTTCTCCAGTATTGTTGA-----tttttttttttttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24690251 890 - 73212453 AAAGAAGTTATTGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCATCAATA--GTTCATGAATGTTGAGGTCCAGTCTCAAACACCTGCCT-AAAAATGCAAATCTGATTATTTCACTTCTGTGAAAAACCGACAACAGT--ATGTAGTCAAGTCCAATATACAGCTCTCCAAGAACTAGCCCCTGCCTACCTTTTTAGA-CCCCCTGGTCACCC-CTCCATGCCTCAGATGGCACACTCCAGTAACACACACCACTGAT--TCCTCCATTCCATGCTTTTGTATACTCCGTCCCCTTCTCTTCTTCTGCatgtcatctcttccaggaagccatccct-tgctctcAAATTCCTTCCTTCCaggatgaccaactgtcctggtttgcccaggacacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcacccCGTTCATCTCTCCTGTGCATGTCTCTCTTTCTTGGGTACAGTGTGTGCATGTGCTTTGGCCCTGATTCCTTTGCGGAATGAGTGGGTGTGGAAAATGGGGAATAGGATGAGATGAGAA--------------------------AGACTGGGTGGTGATAGTGGTACCCCATGGCAAGGGGGACACTGGGACAGGAC------------TGGgaggtggtttacttaacataatgacctccagttccatccatgttgttgcaaataacagaatctcattGCAAAGGAGAACATGGTG----TGTTTGTGG-AATGCCAAGTTTGTGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAAGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGATTGGGGGTACATAATAAGGTATTAATAAGGTATGTAGGAAAGGTTTTCTCCAGTCTTGTTGA----------ttttttttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47910236 905 - 81552678 AAAGAAGTTATTGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCATCAATA--GTTCATGAATGCTGAGGTCCAGTCTCAAACACCTACCT-AAAAATGCAAATCTGATTATTTCACTTCTGTGAAAAACCGACAACAGC--ATGTAGTCAAGTCCAATATACAGCTCTCCAAGATCTAGCCCCTGCCTACCTTTTTAGA-CCCCCTGGTCACCC-CTCCATGCCTCAGATGGCACACTCCAGTAACACACACTACTGAT--TCCTCTGTTCCATGCTTTTGTATACTCCGTCCCCTTCTCTTCTTCTGCatgtcatctcttccaggaagccatccctgtgctctcaaATTCCTTCCCTCCaggatgaccaactgtcctggtttgcccaggacacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagctggtcacccCGTTCATCTCTCCTGTGCACGTCCCTCTTTCTTGGGTACAGTGTGTGCATGGGCTTTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATGGTGGTACCCCATGGCAAGGGGGACACTGGGACAGGACtgggagatggtttgggagatggtttacttaacataatgacctccggttccatccatgttgttgcaaatgagagaatctcatCGCAAAGGGGAACATGATGTGTTTGTTTGTGGAAATGCCGAGTTTGTGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTAATAAGGTATGTAGGAAAGATTTTCTCCAGTCTTGTTGA-------------tttttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53023563 920 + 80904711 AAAGAAGTTATCGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCGTCAATGTTGTTCATCAATGTTGAGGTCCAGTCTCAAACACCTGCCT-AAAAATGCAAATCTGATTATTTCGTTTATGTGAAAAACCAACAGTGGT--ATGTAGTCAAGTCCAATATACAACTCTCCAAGATCTAGCCCCTGCCTACCTTTCTAGA-CCCTCTGGCCATCC-CTCCATGCCTCAGATGGCACAGTCCAGTAACACACACCACCGAT--TCCTCCATTCCATGCTTTTGTATACTCCGTCCCCTTCTTTTCTTCTGCatgtcatctcttccaggaagccatcccagtgctctcaAATTCCTTCCCTCCaggatggtcaactgttctggtttgcccaggatacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcacccCGTTCATCTCTTCTGTGCACATCTCTCTTTCTTGGGTACAGTGTGTGCATGCACTTTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAAATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTGCCCCGTGGCAAGGGGGACACTGGGACAGGACtgggagatggtttgggagatggtttacttaacctaatgacctccagttccatccatgttgttgcaaatgatagaatctcattGCAAAGGGGAACATGGTGTGTTTATTTGTGGAAATGCCAAGTCTGTGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTAGTAAGGTATATAGGAAAGGTTTTCTCCAATCTTGTTGAttttttttttttttttttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52546283 906 + 80997621 AAAGAAGTTATCTACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCGTCAATGTTGTTCATCAATGTTGAGGTCCAGTCTCAAACACCTGCCT-AAAAATGCAAATCTGATTATTTCGTTTATGTGAAAAACCAACAGTGGT--ATGTAGTCAAGTCCAATATACAACTCTCCAAGATCTAGCCCCTGCCTACCTTTCTAGA-CCCTCTGGCCATCC-CTCCATGCCTCAGATGGCACAGTCCAGTAACACACACCACCGAT--TCCTCCATTCCATGCTTTTGTATACTCCGTCCCCTTCTTTTCTTCTGCatgtcatctcttccaggaagccatcccagtgctctcaaATTCCTTCCCTCCaggatggtcaactgttctggtttgcccaggatacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcacccCGTTCATCTCTTCTGTGCACATCTCTCTCTCC--GGTACAGTGTGTGCATGCACTTTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGCACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTGCCCCGTGGCAAGGGGGACACTGGGACAGGACtgggagatggtttgggagatggtttacttaacctaatgacctccagttccatccatgttgttgcaaatgatagaatctcattGCAAAGGGGAACATGGTGTGTTTATTTGTGGAAATGCCAAGTCTGTGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTAGTAAGGTATATAGGAAAGGTTTTCTCCAATCTTGTTGA------------ttttttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47591270 906 + 74645514 AAAGAAGTTAtcgacaatttaaaaataatatt--agcacCTGTTTCTAGCCATCAATGTTGTTCATCAATGTTGAGGTCCAGTCTCAAACACCTGcct-aaaaatgcaaatctgattatTTCGTTTATGTGAAAAACCAACAGTGGT--ATGTAGTCAAGTCCAATATACAACTCTCCAAGATCTAGCCCCTGCCTACCTTTCTAGA-CCCTCTGGCCATCC-CTCCATGCCTCAGATGGCACAGTCCAGTA--ACACACCACCGAT--TCCTCCATTCCATGCTTTTGTATACTCCGtccccttcttttcttctgcatGTCATCTCTTCCAGGAAGCCATCCCTGTGCTCTCAAATTCCTTCCCTCCAGGATGGCCAACTGTTCTGGTTTGCCCAGGATACAGA-GCTTTCTGCAATGTGAGACTTTCAGAGTTAAAACTGGGACAGT--CAGTC---CCAGGACAGTTGGTCACCCCGTTCATCTCTTCTGTGCACATCTCTCTCTCTTGGGTACAGTGTGTGCACGCGCTTTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTGCCCCGTGGCAAGGGGGACACTGGGACAGGACTGGGAGATGGATTGGGAGATGGTTTACTTAAcctaatgacctccagttccatccatgttgttgcaaatgatagaatcTCATTGCAAAGGGGAACATGGTGTGTTTATTTGTGGAAATGCCAAGTCTGTGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTGATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTAGTAAGGTATATAGGAAAGGTTTTCTCCAgtcttgttga------------ttttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9857647 907 - 75148670 AAAGAAGTTATCGACAATTTAAAAATAATATT--AGCACCTGTTTCTAGCCATCAATGTTGTTCATCAATGTTGAGGTCCAGTCTCAAACACCTGCCTAAAAAATGCAAATCTGATTATTTCGTTTATGTGAAAAACCAACAGTGGT--ATGTAGTCAAGTCCAGTATACAACTCTCCAAGATCTAGCCCCTGCCTACCTTTCTAGA-CCCTCTGGCCATCC-CTCCATGCCTCAGATGGCACAGTCCAGTAACACACACCACCGAT--TCCTCCATTCCATGCTTTTGTATACTCTGCCCC---CTTTTCTTCTGCatgtcatcacttccaggaagccatccctgtgctctcaaATTCCTTCCCTCCaggatggccaactgttctggtttgcccaggatacaga-gctttctgcaatgtgagactttcagagttaaaactgggacagt--cagtc---ccaggacagttggtcaccTCGTTCATCTCTCCTGTGTATGTCTCTCTCTCTCGGGTACAGTGTGTGCATGCGCATTGGCCCTGATTCCTTTGTGGAATGAGTGGGTGTGGGACATGGGGAATAGGATGAGATGAGAA--------------------------TGACTGGGTGGTGATAGTGGTGCCCCATGGCAAGGGGGACACTGGGACAGGACTGGTAGATGgtttgggagatggtttacttaacataatgacctccagttccatccacgttgttgcaaatgacagaatctcactGCAAAGGGGAACATGGTGTGTTTATTTGTGGAAATGCCAAGTCTATGGCACTTG---TGTCAGATTTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGTTGAGTATTCTTATTTGGA---GACCAGGCTGGGGGTGCATAATAAGGTATTAGTAAGGTATATAGGAAAGGTTTTCTCCAGTCTTGCTGA-----------tttttttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112703301 862 + 159171411 AAAGAAGTTATTGACAATTTAGAAATAATATT-AAACACCTGTTTCTAGCCATCAATA--GTTCATCAATGTTGAGGTCCAGTCTCAAACACCTGCTG-AAAAATGCAAATCTGATTATTTTACTTCTGTGAAA-ACTGACAACAGT--ATGTAGTCAAGTCCAATATAC---------------AGCCCCTGCCTACCTTTCTAGA-CCCCTTGGTTACCC-CTCCATTCCTCAGATGCCACACTCCAGTAACCCACACCACTGAT--TCCTCCATTGCATGCTTTTGTATACTCCGTCCCCTTC---TCTTCTGggtgtcatctcttccaggaagtcatccctgtgctttcaaATTCCTTCCCTCCaaggtgaccatttgtcctggtttgtccaggacacagaggctttctgcgacatgagattttcagtgttaaaactgggacagt--cagtc---ccaggagagctggtcacccCGTTCATCTCTCCCGTGCACGTGTCTC--TCTTGGGCACAGTGTGTGCATACACTTTGGCCCTGATTCATTTGTGGAATGGGTGGGTGTGGGACATGGGGAGTAGGATGAGATGAGAATGACCCCACCAAGGTTCTTACTTGGGTGACTGGGTGGTGATGGCGGTACCTCATGCCAATGGGGACACTGGGACAGGGCTGGGAGATGGTTTGGGAGGGG--------------------------------------------------------TCGTTGCACAGGGGCGCATGGTGTGTTCATTTGTGGACACGCCAAATTTGTGTCACTTG---TGTCAGATGTAGGTGGAGGAGACCTGGATGAAGAGGAAGACTGCTGAGTATTCTGATATGGA---GACTAGGCTGGGGGTGCATAATAAGGTATTAATAAGATATCTAGGAAAGATTTTCTCCAGTCTTGTTGA-------ttcttttttttt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39271664 826 - 61074082 aaAGAACTTACTGACAATTTAAAAATAACATCTCAGCTCCTGCTTCTAGCCGTCAGTG--GTTCATAAGTGTAGAGGCCCATCTCAAAATACCTACCT-ACAAATGCAAACCTGATTGTTTCGCTTCTCTGAAAAATTCTTGGCACTTAGTTTGGTCAAGTCCAATACATAGCTCTCTAAGATCTAAACCCTTCCTACCTTTGCAGAGTCCCCTTCCCACCCACCCTGTGCCTCCAATTCTAC--TTCAGTAACACAAGCCATTGATACTCCTCCACTCTGTTCCTCTGCA-----------------------TGGGTATCATTCCTTCCAGGAAGACATCTCTGTATTCCCAAA------CTTTCCAAg-tgcccagctctcttggtttgcctgagattgagaagttttctgggatgtgagactttgaatgttcaaatcaggacagttgcaggcaaaccaggaccgttggtcacactGTTCATCTCCCTTGTGCATGTCCCTCTGT----GGTATA---CATACATAC-CTCTGGGCCTGAGTCCtttgttgagtgaatgagtgtgg-atgtgtggagtag---gagataagaa---gactctcagggttctgacttgggtgactgggccatgatagtg---ccctttgcagagggggccactgggacagagc--ggagagggtttggggaggggtt-------------------------------------------------------gttgcaaaggaatgcatgacatgttcatttgtagacatgccaagtctgtggtgtctgcactatcagatgtacatggagaagacctctatgaagag---gattgttgaatgctctaatctggaAAGAATTAGATTGGCGGTGAATAATGAACT------------CATAGGAAAGGTGTCCTCCA-CCTTGTTGG---------------TTCT i canFam3.chr9 I 230 I 39 e mm10.chr11 99441775 5987 + 122082543 I a score=385107.000000 s hg38.chr17_JH159146v1_alt 42449 137 + 278131 tttttttttgagacagaatcttgcgc-tgttgcccaggccagagtgcaatggcatgatcttggcccactgcaacctccgcctcctggattcaagcgattcttctgcctcagcttcccaagtagctgggattacaggca s panTro4.chr17 66159326 137 - 82630442 tttttttttgagacagaatcttgcgc-tgttgcccaggccggagtgcaatggcatgatcttggcccactgcaacctctgcctcctggattcaagtgattcttctgcctcagcttcccaagtagctgggattacaagca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24691141 137 - 73212453 tttttttttgagacagaatcttgctc-tgttgcccaggctggagtgcaatggcgtgatctcggctcactgcaacctccacctcctgggttcaagtgattctcctacctcagcctcccaaatagctgggattacaggca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47911141 137 - 81552678 tttttttttgagacagaatcttgctc-tgttgcccaggccagagtgcaatggcgtgatctcggcccactgcaacctctgcctcctgggctcaagcgattctcctgcctcagcctcccaagtagctgggattacaggca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53024483 138 + 80904711 tttttttttgaaatggagtttcgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagtgattctcctacctcagcctcctgagtagctgggattacaggca i rheMac3.chr16 C 0 I 32 s macFas5.chr16 52547189 136 + 80997621 tttttttttgagac-gaatcttgctc-cgttgcccaggccagagtgcaatggtgtgatcttggcccactgcaagctccacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47592176 136 + 74645514 tttttttttgagac-gaatcttgctc-cgttgcccaggccagagtgcaatggtgtgatcttggcccactgcaagctccacctcctgggttcaagagattctcctgcctcagcctcctgagtagctgggattacaggca i papAnu2.chr16 C 0 I 7 s chlSab2.chr16 9858554 137 - 75148670 tttttttttgagacagaatctttctc-cgttgcccaggccagagtgcaatggtgtgatctcggcccactgcaagctccacctcctgggttcaagtgattctcctgcctcagcttcccgagcagctgggattacaggca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112704163 137 + 159171411 tttttttttgagatggagtcttgctc-tgtcacccaggctggagtgcgatggcgtaatcttgcttcactacaacctctgcctcctgggttcaagcaattctcctgcctcaccttcctgagtagctaggattacaggtg i calJac3.chr5 C 0 C 0 e canFam3.chr9 39272490 39 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I a score=37339.000000 s hg38.chr17_JH159146v1_alt 42586 18 + 278131 cctgccaccatgcccatc s panTro4.chr17 66159463 18 - 82630442 cctgccaccatgcccatc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24691278 18 - 73212453 cccgccaccatgcccagc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47911278 18 - 81552678 cccgccaccacgcccggc i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52547325 18 + 80997621 cctgccaccatgccctgc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47592319 18 + 74645514 cctgccaccatgccctgc i papAnu2.chr16 I 7 C 0 s chlSab2.chr16 9858691 18 - 75148670 cctgccaccgtgccctgc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112704300 18 + 159171411 cccaccaccatacccggc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39272490 39 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I e rheMac3.chr16 53024621 32 + 80904711 I a score=3030.000000 s hg38.chr17_JH159146v1_alt 42604 11 + 278131 t---aagttttata s panTro4.chr17 66159481 14 - 82630442 taagaagttttgta i panTro4.chr17 C 0 I 2963 s ponAbe2.chr17 24691296 11 - 73212453 t---aaattttgta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47911296 11 - 81552678 t---aagttttgta i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52547343 8 + 80997621 t---aaGtttt--- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47592337 5 + 74645514 t---aagt------ i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9858709 8 - 75148670 t---aattttt--- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39272490 39 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I e calJac3.chr5 112704318 0 + 159171411 C e rheMac3.chr16 53024621 32 + 80904711 I a score=546.000000 s hg38.chr17_JH159146v1_alt 42615 1 + 278131 t s panTro4.chr17 66162458 1 - 82630442 t i panTro4.chr17 I 2963 C 0 s ponAbe2.chr17 24691307 1 - 73212453 t i ponAbe2.chr17 C 0 I 7 s nomLeu3.chr19 47911307 1 - 81552678 t i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 39272490 39 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I e calJac3.chr5 112704318 0 + 159171411 C e chlSab2.chr16 9858717 0 - 75148670 C e papAnu2.chr16 47592342 0 + 74645514 C e macFas5.chr16 52547351 0 + 80997621 C e rheMac3.chr16 53024621 32 + 80904711 I a score=4020.000000 s hg38.chr17_JH159146v1_alt 42616 9 + 278131 atatatata s panTro4.chr17 66162459 9 - 82630442 atttttttt i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47911308 6 - 81552678 ---tttttt i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52547351 9 + 80997621 ttctttttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47592342 6 + 74645514 ---tttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9858717 6 - 75148670 ---tttttt i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24691308 7 - 73212453 I e canFam3.chr9 39272490 39 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I e calJac3.chr5 112704318 0 + 159171411 C e rheMac3.chr16 53024621 32 + 80904711 I a score=346035.000000 s hg38.chr17_JH159146v1_alt 42625 190 + 278131 ttttttttgagatggagttttgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagcgattctcctacctcagcctcctgagtagctgggattacaggtatgtgccaccatacccggctaattttttgta-tatttagtagagacggggtttct s panTro4.chr17 66162468 190 - 82630442 ttttttttgagatggagttttgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcgctgcaacctctgcctcccaggttcaagcgattctcctacctcagcctcctgagtagctgggattacaggtatgtgccaccatacccggctaattttttgta-tatttagtagagacagggtttct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24691315 190 - 73212453 ttttttttgagatggagtttagctcttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctacctcagcctcctgagtagctgggattacaggcatgtgccaccatacctggctaattttttgta-tatttagtaaagacagggtttct i ponAbe2.chr17 I 7 C 0 s nomLeu3.chr19 47911314 190 - 81552678 ttttttttgagatggagttttggtcttgttgcccaggctggagtgcaatggtgcaacctcggctcactgcaacctctgcctcccaggttcaagcgattctcctacctcagcctcctgaatagctgggattgcaggcatgtgccaccatacccagctaattttttgta-tatttagtagagacagggtttct i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52547360 190 + 80997621 ttttttttgaaatggagtttcgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagtgattctcctacctcagcctcctgagtagctgggattacaggcatgcaccaccacacccgtctaattttttgta-tatttagtagagacagagtttct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47592348 190 + 74645514 ttttttttgaaatggagtttcgctcttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaacctctgcctcccaggttcaagtgattctcctacctcagcctcctgagtagctgggattacaggcatgcaccaccacacccgtctaattttttgta-tatttagtagagacagggtttct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9858723 191 - 75148670 ttttttttgaaatggagtttcgctcttgttgcccaggctggagtgcaatggtacaatctcggctcactgcaacctctgcctcccgggttcaagtgattctcctacctcagcctcctgagtagctgggattataggcatgcaccaccacacccggcctcatttttgtattttttagtagagacagggtttca i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39272490 39 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I e calJac3.chr5 112704318 0 + 159171411 C e rheMac3.chr16 53024621 32 + 80904711 I a score=119036.000000 s hg38.chr17_JH159146v1_alt 42815 102 + 278131 ccatggtggtcaggctggtctcaaactcctgacctcaggtgatctgcccagctccgcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcc s panTro4.chr17 66162658 102 - 82630442 ccatggtggtcaggctggtctcaaactcctgacctcaggtgatctgcccacctctgcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24691505 102 - 73212453 ccatggtggtcaggctggtctcaaattcctgacctcaggttatccgcccacctcgacctcccaaagtgctgggattacaggtgtgagccaccacgcctggcc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47911504 102 - 81552678 ccatggtggtcaggctggtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaaagtgccgggattacaggcatgagccaccacgcctggcc i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47592538 97 + 74645514 ccatgttggtca-----gtctcgaactcctgatctcaagtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9858914 97 - 75148670 ccatgttggtca-----gtctcgaactcctgacctcaagtgatccgcccacctcggcctcccaaagtgctggtattacaggcatgagccactgtacccggcc i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39272490 39 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I e calJac3.chr5 112704318 0 + 159171411 C e macFas5.chr16 52547550 0 + 80997621 C e rheMac3.chr16 53024621 32 + 80904711 I a score=24981.000000 s hg38.chr17_JH159146v1_alt 42917 14 + 278131 taatttttgtattt s panTro4.chr17 66162760 14 - 82630442 taatttttgtattt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24691607 14 - 73212453 taatttttgtattt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47911606 14 - 81552678 taatttttgtattt i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47592635 14 + 74645514 taatttttgtattt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9859011 14 - 75148670 tcatttttgtattt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112704318 14 + 159171411 taatctttgtattt i calJac3.chr5 C 0 C 0 e canFam3.chr9 39272490 39 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I e macFas5.chr16 52547550 0 + 80997621 C e rheMac3.chr16 53024621 32 + 80904711 I a score=45647.000000 s hg38.chr17_JH159146v1_alt 42931 21 + 278131 tttagtagagatggggtttca s panTro4.chr17 66162774 21 - 82630442 tttagtagagacggggtttca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24691621 21 - 73212453 tttagtagagtcggggtttca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47911620 21 - 81552678 ttaagtagatacggggtttca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53024653 21 + 80904711 tttagtagagacagggtttct i rheMac3.chr16 I 32 C 0 s papAnu2.chr16 47592649 21 + 74645514 tttagtagagacagggtttca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9859025 21 - 75148670 tttagtagagacagggtttca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112704332 21 + 159171411 tttagtagagacagggtttct i calJac3.chr5 C 0 C 0 e canFam3.chr9 39272490 39 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I e macFas5.chr16 52547550 0 + 80997621 C a score=299893.000000 s hg38.chr17_JH159146v1_alt 42952 102 + 278131 ccatgttggtcagtctcgaactcctgacctcaggtgatccacctacctcggcctcccaaagtgctggtattacaagtgtgagccaccatgccc-ggTGCCAGT s panTro4.chr17 66162795 102 - 82630442 ccatgttggtcagtctcgaactcctgacctcaggtgatccacctaccttggcctcccaaagtgctggtattacaagtgtgagccaccatgccc-ggTGCCAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24691642 102 - 73212453 ccatgttggtcagtctcgaactcctgacctcaagtgatccacctacctcggcctcccaaagtgctggtattacaggcataagccaccatgccc-ggTGCCAGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47911641 102 - 81552678 ccatgttggtcagtctcaaactcctgacctcaagtgatccacctacctcggcctcccaaagtgctggtattacaggtgtgagccaccgtgccc-ggTGCCAGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53024674 102 + 80904711 ccatgttggtcagtctcgaactcctgatctcaagtgatccacccaccttggcctcccaaagtgccggtattacaggcgtgaaccactgcgccc-CGTGCCAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52547550 102 + 80997621 ccatgttggtcagtctcgaactcctgatctcaagtgatccacccacctcggcctcccaaagtgccggtattacaggcgtgaaccactgcgccc-CGTGCCAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47592670 102 + 74645514 ccatgttggtcagtctcgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgctggtattacaggcgtgaaccactgcgccc-cgTGCCAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9859046 102 - 75148670 ccatgttggtcagtctcgaactcctaacctcaagtgatccacccacctcggcctcccaaagtgctggtattacaggcgtgaaccactgcgccc-agTGCCAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112704353 103 + 159171411 ctatgttggtcagtcttgaactcttgacctcaggtgatccatccaccttggcctcccaaactgctgggattccaggtatgaggcaccacacccTAGCCCCAGT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39272490 39 - 61074082 I e mm10.chr11 99441775 5987 + 122082543 I a score=37023.000000 s hg38.chr17_JH159146v1_alt 43054 11 + 278131 CTTGATGATTC s panTro4.chr17 66162897 11 - 82630442 CTTGATGATTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24691744 11 - 73212453 CTTGTTGATTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47911743 11 - 81552678 CTTGTTGATTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53024776 11 + 80904711 CTTGTTGATTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52547652 11 + 80997621 CTTGTTGATTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47592772 11 + 74645514 CTTGTTGATTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9859148 11 - 75148670 CTTGTTGATTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112704456 11 + 159171411 CTCATTGATTC i calJac3.chr5 C 0 C 0 s mm10.chr11 99447762 11 + 122082543 CTTGCTGAATT i mm10.chr11 I 5987 C 0 e canFam3.chr9 39272490 39 - 61074082 I a score=1113719.000000 s hg38.chr17_JH159146v1_alt 43065 312 + 278131 TTATGTTTATCCCTCATATATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAACAGCATCTCCTGGGAGAGGCTGCCATCTTGCATAGCCCTTGCTGCTGCCTGGAGGCTTCTTC-------TCTCTAAA-----CTGCTGCATTATCACATCATTGAGCGTTTCATTCATTGTGATAACTGAAGACTGTAGAATTTATGGTGC-----------TTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAATT s panTro4.chr17 66162908 313 - 82630442 TTATGTTTATCCCTCATATATAAATTACCACCATGATTCTAGTTCACTCAAGTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAACAGCATCTCCTGGGAGAGGCTGCCATCTTGCATAGCCCTTGCTGCTGCCTGGAGGCTTCTTC-------TCTCTAAA-----CTGCTGCATTATCACATCATTGAGCGTTTCATTCATTGTGATAACTGAAGACTGTAGAATTTATGGTGC-----------TTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24691755 311 - 73212453 TTATGTTTATCCCTCATATATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAACAGCATCTCCTGGGAGAGGCTGCCATCTTGTATAGCCCTTGCTGCTGCCTGGAGGCTTCTTC-------TCTCTAAA-----CTGCTGCATTATCACATCATTGAGCATTTCATTCATT-CAATAACCTAAGACTGTGGAATTTATGGTGC-----------TTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47911754 312 - 81552678 TTATGTTTATCCGTCATATGTAATTTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCATAGGAAACAGCATCTCCTGGGAGAGGCTGCCACCTTGCATAGCCCTTGCTGCTGCCTGGAGGCTTCTTC-------TCTCTAAA-----CTGCTGCATTATCACATCATTGAGCATTTCATTCATCGCGATAACCGAAGACTGTAGAATTTATGGTGC-----------TTGTGAAAGCTCTAGAAAATATTGCCTAGCTATTGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53024787 323 + 80904711 TTATGTTTATCCGTCATACATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAGCAGCATCTCCTGGGAGAGGCTGCCATCTTGCATAGCCCTTGCTGCCGCCTGGAGGCTTCTTC-------TCCCTGAA-----CTGCTGCATTGTCACATCATTGAGCATTTCATTCATTGTGATAACCTAAGACTGTAGAATTTATGGTGCCTGGGTGCAATTTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACCA---------AATGGTAATAACCAGTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52547663 323 + 80997621 TTATGTTTATCCGTCATACATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAGCAGCATCTCCTGGGAGAGGCTGCCATCTTGCATAGCCCTTGCTGCCGCCTGGAGGCTTCTTC-------TCCCTGAA-----CTGCTGCATTGTCACATCATTGAGCATTTCATTCATTGTGATAACCTAAGACTGTAGAATTTATGGTGCCTGGGTGCAATTTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACCA---------AATGGTAATAACCAGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47592783 323 + 74645514 TTATGTTTATCCCTCATACATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAGCAGCATGTCCTGGGAGAGGCTGCCGTCTTGCATAGCCCTTGCTGCCGCCTGGAGGCTTCTTC-------TCCCTGAA-----CTGCTGCATTGTCACATCATTGAGCATTTCATTCATTGTGATAACCTAAGACTGTAGAATTTATGGTGCCTGGGTGCAATTTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAGTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9859159 323 - 75148670 TTATGTTTATCCCTCATACATAAATTACCACCATGATTCTAGTTCACTCA-GTCTTCC-AAAACTCCAGAGTTAAA--TC--TGCACAGACAGACCACAGGAAGCAGCATCTCCTGGGAGAGGCTGTCATCTTGCATAGCCCTTGCTGCTGCCTGGAGGCTTCTTC-------TCCCTGAA-----CTGCTACATTGTCACATCATTGAGCATTTCATTCATTGTGATAACCTAAGACTGTAGAATTTATGGTGCCTGGGTGCAATTTGTGAAAGCTGTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTAACTA---------AATGGTAATAACCAGTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112704467 322 + 159171411 TTACATTTATCCCTCATGTAAAAATTACCACCGTGATTCTAGTTCACTCA-GTCTTCC--AAACTTCAGAGTCAAA--TC--TGCACAGACAGACCACAGGAAACAGCGTCTCCCGGGAGAGGCTGCCACTTTGCATAGCCCTTGCTGCTGCCTGGAGGCTGCTTC-------TCTCTAAA-----CTGCTGCATTATCACATAGTTGAGCATTTTGTTCACTGCAATAACCTAAAACTGTAGAATTTATGGTGCTTGGCTGCAATTTGTGAAAGCTCTAGAAAATATTGCCTAGCTATAGGCTATAATATTGTTAGCTTACTA---------AATGGTAATAATCAATT i calJac3.chr5 C 0 I 284 s mm10.chr11 99447773 296 + 122082543 TCACATTTCTCCTGATTATACTAATTACCTCTACAAGTCTAACTCATTCC-ATTTTCC-CGTACTTT--TGTTAGG--TCTTTGCACAGGCAGACCACGAG---------TTATTCGGAGAAGATGCCAT-TGGTACACACCTCCCTGCTGCCTACAGGTTTTCTG-------TTTCT-----------TTGCATTAACCCAAGGCTGAGCATTTT--------TGCTAATTACGGTGTGTAATCTATATGGTGCCTGAGTGCAGCTTATGAAG------------ATTATCTAGATATAGGCTTTAATACAGTTGACCAAACACTTTTATGGAATGGTAATAATCAATT i mm10.chr11 C 0 C 0 s canFam3.chr9 39272529 307 - 61074082 ttgtatgtataaattatataaaaattaCCAGCATAACTCTAGTTCACTTG-GTCTTTTTGAAACTCT--AGTCAAGCCTC--TGTACAAATAGACCCCAGGTGACAG---------GGAGGAGCC-CCACCTTGCATGGACCTCATTTCTGCCCTAAGGTTTTTCCTTTCTATTCTCTGAACTACTCTACTGCATTACCATACAACTGGACATTTCATTTGTTGCCATAAATTAAAAATGTAATCATTATTGTGCTTAAGTGCAGTTTGTGAATGATCC--AAAGTCTGGCCTAGACTTA-----------------CCAACTA---------AATGGCAATAACCAATT i canFam3.chr9 I 39 C 0 a score=76683.000000 s hg38.chr17_JH159146v1_alt 43377 17 + 278131 AGCATTGAACTTTTTTA s panTro4.chr17 66163221 17 - 82630442 AGCATTGAACTTTTTTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24692066 17 - 73212453 AGCATTGAACTTTTTTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47912066 17 - 81552678 AGCATTGAACTTTTTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53025110 17 + 80904711 AGCATCGAACTTTTTTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52547986 17 + 80997621 AGCATCGAACTTTTTTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47593106 17 + 74645514 AGCATCGAACTTTTTTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9859482 17 - 75148670 AGCATCGAACTTTTTTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112705073 17 + 159171411 AGCATTGAATTCTTTTA i calJac3.chr5 I 284 C 0 s mm10.chr11 99448069 17 + 122082543 AGCATTGAACTTTTTTA i mm10.chr11 C 0 I 583 s canFam3.chr9 39272836 17 - 61074082 AGCACTGAACCTTTTGA i canFam3.chr9 C 0 C 0 a score=38281.000000 s hg38.chr17_JH159146v1_alt 43394 11 + 278131 GACTATGTTCT s panTro4.chr17 66163238 11 - 82630442 GACTATGTTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24692083 11 - 73212453 GACTATATTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47912083 11 - 81552678 GACTATATTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53025127 11 + 80904711 GACTATATTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52548003 11 + 80997621 GACTATATTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47593123 11 + 74645514 GACTATATTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9859499 11 - 75148670 GACTATATTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112705090 11 + 159171411 GACTATGTTTT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39272853 10 - 61074082 -ACTTTATTTT i canFam3.chr9 C 0 C 0 e mm10.chr11 99448086 583 + 122082543 I a score=3289827.000000 s hg38.chr17_JH159146v1_alt 43405 915 + 278131 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGATATGCTTTTATGTTACTTGGACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTCACCATGTGTT----------------------------------------------------TTTATTTT---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---ttgaaagtcatgtaggcca---tcctcattttacaaatg-aaaagct---gaggcatatgcagattaatgac-----------ttgcctaTAGCAACGGTACAAATATAGAAAGTTG---AGATTAAGCTACATAATATTTGCTCTGCAAATTGATTTTTAGTGCTTTTGCATGACCCAGGAAAACTGTCTTGGCAACAACATCCTGATGTATAAACAAAACTCTCATCAACGAAATTACTGCTTAAAAGGT---GAATATAA------GGTCTATACTCAATACA-TTTT-TGTTTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATATGGTCCTTCCCGTGCTACTAATCACACAAAATTGAAACAGGTGCTCTAAGATACGGCGGCGATCATTGGCTCCAGAATGCTCCTAGAGCAAGGCACGATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTCGTTTTTCAGAATGCAAACGGCAGATGTGTTCACATTTCTGCTCGGTGGGGTATTTCATTACTTTTTAATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAAGCATCCGACTGGTTAAAAGAGA-AGCTT--------CATATTGAAAATTTGTTGCAGAGTACAGGATTGAGCTTGAAAT---G--GAGGG--------ATG-GAAAGAGAGA----------------------------GGGAAAGAACGCTTTTCCCAACACCTAATTTTGCAAGGAAGAGTTGTATTAATAAACAGGTTTTAGGAAAACTG-------CCTGTAAAGATTAACATC s panTro4.chr17 66163249 915 - 82630442 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGATATGCTTTTATGTTACTTGGACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTCACCACGTGTT----------------------------------------------------TTTATTTT---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctgtcatatctgaaagagccc---ttgaaagtcatgtaggcca---tcctcattttacaaatg-aaaagct---gaggcatatgcagattaatgac-----------ttgcctaTAGCAACGGTACAAATATAGAAAGTTG---AGATTAAGCTACATAATATTTGCTCTGCAAATTGATTTTTAGTGCTTTTGCATGACCCAGGAAAACTGTCTTGGCAACAACACCCTGATGTATAAACAAAACTCTCATCAACGAAATTACTGCTTAAAAGGT---GAATATAA------GGTCTATACTCAATACA-TTTT-TGTTTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATATGATCCTTCCCGTGCTACTAATCACACAAAATTGAAACAGGTGCTCTAAGATACGGCGGCGATCATTGGCTCCAGAATGCTCCTAGAGCAAGGCACGATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTCGTTTTTCAGAATGCAAACGGCAGATGTGTTCACATTTCTGCTCGGTGGGGTATTTCATTACTTTTTAATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAAGCATCAGACTGGTTAAAAGAGA-AGCTT--------CATATTGAAAATTTGTTGCAGAGTACAGGATTGAGCTTGAAAT---G--GAGGG--------ATG-GAAAGAGAGA----------------------------GGGAAAGAACGCTTTTCCCAACACCTAATTTTGCAAGGAGGAGTTGTATTAATAAACAGGTTTTAGGAAAACTG-------CCTGTAAAGATTAACATC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24692094 914 - 73212453 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGATATGCTTTTATGTTACTTGGACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACGAATCACTCACCATGTGTT----------------------------------------------------TTTATTTT---------------TCATAAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---tcaaaaatcatgtaggcca---tcctcattttacaaatg-aaaagct---gaggcatacgcagattgatgac-----------ttgcctgtagcaacggtacaaatatagaaagttg---agattaAGCCACATAATATTTGCTCTGCAAATTGATTTTTAGTCCTTTTGCATGACCCAGGAAAACTGTCTTGCCAACAACACCCTGATGTATAAACAAAACTCTCATCAATGAAATTACTGCTTAAAAGGC---AAATATGA------GGTCTATACTCAATACA-TTTT-TGTTTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATATGGTCCTTCCCTTGCTACTACTCACACAAAATTGAAACAGGTGCTCTAAGATACGGCAGCGATCATTGGCTCCAGAATGCTCCTAGAGCAAG----GATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTCGTTTTTCAGAACACAAATGGCAGATGTATTCACATTTCTGCTCGGTGGGGTATTTCATTACTTTTTAATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAAGCATCAGACTGGTTAAAAGAGA-AGCTC--------CATATTGAAAATTTGTTGCAGCGTACAGGATTGAGCTTGAAATGGGG--GAGGG--------ATG-GAAAGAGAGA----------------------------GGGAAAGAATGCTTTTCCCAACACCTAATTTTGCAAGGAAGAGTTGTATTAATAAACAGGTTTTAGGAAAACTG-------CCTGTAAAGATTAACATC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47912094 910 - 81552678 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGATGTGCTTTCATGTTACTTGGACAACCCAAACTTACTATTTTTGAAAAC----AAGGAAGCAAGTGACAAATCATTCACCATGTGTT----------------------------------------------------TTTATTTT---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---ttgaaaatcatgtaggcca---tcctcattttacaaatgaaaaagct---gaggcatacgcagattagtgac-----------ttgcctatagcaacagtacaaatatagaaggttg---agattaAGCTACATAATATTTACTCTGCAAATTGATTTTTAGTCCTTTTGCATGACACAGGAAAACTGTCTTGCCAACAACACCCTGATGTATAAACAAAACTCTCATCAATGAAATTACTGCTTAAAAGGC---AAATCTAA-------GTCTATACTCAATACA-TTTT-TGTTTCTA-CCTGGG-GCTAG----AGACTTCCTCTTTCAATATGGTCCTTCCCTTGCTACTAATCACACAAAATTGAAATAGGTGCTCTAAGATACGGCAGCGATCATTGGCTCCAGAATACTCCTAGAGCAAGGCATGATGTATATGGATG----CATCGGACTAGATGAAGAGATGTATTATTAA----TTTTTCAGAAC----ACGGCAGATGTGTTCACATTTCTGCTCGGTGGGGTATTTCATTACTTTTTAATATGCACACATTTAAGTAAAAAGGGAAAAACAAACCATATGAAGCATCAGACTGGTTAAAAGATA-AGCTC--------CATATTGAAAATGTGTTGCAGTGTGCAGGGTTGAGCTTGAAATGGgg--gaggg--------atg-gagagagaga----------------------------gggaAAGAACGCTTTTCCCAACACCTAATTTTGCAAGGAAGAGTTGTATTAATAAACAGATTTTAGGAGAACTG-------CCTGTAAAGATTAACATC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53025138 919 + 80904711 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGTTATGCTTTTATGTTATCTGAACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTCACCATGTGTT----------------------------------------------------TTTATTTC---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---ttgaaaatcatgtaggcca---tcctcactttacaaatgaaaaagct---gaggcatacccaggttaatgac-----------ttgcctatagcaacagtacaaatatagaaagttg---agattaAGCTACATAATATTTGCTTTGCAAATTGATTTTTAGTCCTTTTGCATGACCCAGGAAAGCTGTCTTGCCAGCAACACCCTGACGTATAAAGAAAACTCTCATCAATGAAATTACTGCTTGAAAGGT---GAATAGAA------AGTCTATACTCAACACA-TTTT-TGTGTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATGTGGTCCTTCCCTTGCTACTAATCACACAAAATTGAAATAGGTGCTCTAAGATATGGCAGCGATCGTTGGCTCCAGAATGCTCCTAGAGCAAGGCACGATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTAGTTTTTCAGAACACAAACAGCAGATGTGTTTACATTTCTGCTCAGTGGGGTATTTCATTGCTTTTTTATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAGGCATCAGACTGGTTAAAAGAGA-AGCTC--------CATGTTGAAAATTTGTTGCAGCGTACAGGATGGAGCTTGAAATTGAG--GAGGG--------ATG-GAAAGAGACA----------------------------GGGAAAGAACGCTTTTCCCAACACTTAATTTTGCAAGGAAGAGCTGTATTAATAAACAGGTTTCAGGAAAGCTG-------CCTGTAAAGATCAACATC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52548014 920 + 80997621 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGTTATGCTTTTATGTTATCTGAACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTCACCATGTGTT----------------------------------------------------TTTATTTC---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---ttgaaaatcatgtaggcca---tcctcactttacaaatgaaaaagct---gaggcatacccaggttaatgac-----------ttgcctatagcaacagtacaaatatagaaagttg---agattaAGCTACATAATATTTGCTTTGCAAATTGATTTTTAGTCCTTTTGCATGACCCAGGAAAGCTGTCTTGCCAGCAACACCCTGACGTATAAAGAAAACTCTCATCAATGAAATTACTGCTTGAAAGGT---GAATAGAA------AGTCTATACTCAACACATTTTT-TGTGTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATGTGGTCCTTCCCTTGCTACTAATCACACAAAATTGAAATAGGTGCTCTAAGATATGGCAGCGATCGTTGGCTCCAGAATGCTCCTAGAGCAAGGCACGATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTAGTTTTTCAGAACACAAACAGCAGATGTGTTTACATTTCTGCTCAGTGGGGTATTTCATTGCTTTTTTATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAGGCATCAGACTGGTTAAAAGAGA-AGCTC--------CATGTTGAAAATTTGTTGCAGCGTACAGGATGGAGCTTGAAATCGAG--GAGGG--------ATG-GAAAGAGACA----------------------------GGGAAAGAACGCTTTTCCCAACACTTAATTTTGCAAGGAAGAGCTGTATTAATAAACAGGTTTCAGGAAAGCTG-------CCTGTAAAGATCAACATC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47593134 919 + 74645514 -AAGGGAGAAATCATCAGtgatttaattttctgttatgCTTTTATGTTATCTGAACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTcaccatgtgtt----------------------------------------------------tttatttc---------------tcatgagGCTTGTTTCTAAATACAAAGAACCATATAGGCTATCATATCTGAAAGAGCCC---TTGAAAATCATGTAGGCCA---TcctcactttacaaatgaaaaagCT---GAGGCATACCCAGGTTAATGAC-----------TTGCCTATAGCAACCGTACAAATATAGAAAGTTG---AGATTAAGCTACATAATATTTGCTTTGCAAATTGATTTTTAGTCCTTTTGCATGACCCAGGAAAACTGTCTTGCCAGCAACACCCTGATGTATAAAGAAAACTCTCATCAATGAAATTACTGCTTGAAAGGT---GAATAGAA------GGTCTATACTCAACACA-TTTT-TGTGTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATGTGGTCCTTCCCTTGCTACTAATCACACAAAATTGAAATAGGTGCTCTAAGATATGGCAGCGATCATCGGCTCCAGAATGCTCCTAGGGCAAGGCACGATGTATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTAGTTTTTCAGAACACAAACAGCAGATGTGTTTACATTTCTGCTCAGTGGGGTATTTCGTTGCTTTTTGATGTGCACACACTTaagtaaaaagggaaaaacaaaccaTACAAGGCATCAGACTGGTTAAAAGAGA-AGCTC--------CATGTTGAAAATTTGTTGCAGCGTACAGGATGGAGCTTGAAATGGGG--AAGGG--------ATG-gaaagagaca----------------------------gggaaagaaTGCTTTTCCCAACACTTAATTTTGCAAGGAAGAGCTGTATTAATAAACAGGTTTCAGGAAAGCTG-------CCTGTAAAGATCAATATC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9859510 919 - 75148670 -AAGGGAGAAATCATCAGTGATTTAATTTTCTGTTATGCTTTTATGTTATCTGAACAACCCAAACTTACTATTTTTGAAAAC----AAGTAAGCAAGTGACAAATCACTCACCATGTGTT----------------------------------------------------TTTATTTC---------------TCATGAGGCTTGTTTCTAAATAcaaagaaccatataggctatcatatctgaaagagccc---ttgaaaatcatgtaggcca---tcctcactttacaaatgaaaaagct---gaggcatacccaggttaatgac-----------ttgcctatagcaacagtacaaatatagaaagttg---agattaAGCTACATAATATTTGCTTTGCAAATTGATTTTTAGTCCTTTTGCATGACCCAGGAAAACTGTCCTGCCAGCAACACCCTGATGTATAAAGAAAACTCTCATCAATGAAATTACTGCTTGAAAGGT---GAATAGAA------GGTCTATACTCAACACA-TTTT-TGTGTCTA-CCTGGG-GCTAG----AGACCTCCTCTTTCAATGTGGTCCTTCCCTTGCTACTAATCATGCAAAATTGAAATAGGTGCTCTAAGATATGGCAGCGATCATCGGCTCCAGAATGCTCCTAGAGCAAGGCAGGATGTATATGGATG----CATCAGACTAGATGAAGAGATATATTATTAATTAGTTTTTCAGAACACAAACAGCAGATGTGTTTATGTTTCTGCTCAGTGGGGTATTTCATTGCTTTTTTATGTGCACACACTTAAGTAAAAAGGGAAAAACAAACCATACAAGGCATCAGCCTGGTTAAAAGAGA-AGCTC--------CATGTTGAAAATTTGTTGCAGTGTACAGGATGGAGCTTGAAATCAAG--GAGGG--------ATG-GAAAGAGAGA----------------------------GGGAAAGAACGCTTTTCCCAACACTTAATTTTGCAAGGAAGAGTTGTATTAATAAATAGGTTTCAGGAAAGCTG-------CCTGTAAAGATCAACATC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112705101 899 + 159171411 -AAGGGAGAAATCATCAGTGATTTAGCTTTATGATATGCTTTGATGTTACTGGAACAACCCAAATTTATTATTTTTGAAAAC----AAGT----AAGTGACAAATTACTCACCGTGCGTT----------------------------------------------------TTTATTTT---------------TCATGA---TTGCTTCTAAATAGAAATaaccatataagctgtcatatctggaagagccc---ttgaaaaccatgtaggcca---tcctcattttacaaatgacaaagct---gaggcatacccaggttaatgac-----------ttgcctatagcaacagtacaaatatagaaagttg---agattaAGTTACATAATATTTGCTCTGCAAATTGATTTTTAGTACTTTTGTGTGACCCAGGAAAACTGTCTTGCCAACAACACCCTGAGGTATAAACAAAACTCTCATCAATGACATTACTGCTTAAAAGGT---GAATATAA------GGTCTATGTTCAACACA-TTTT-TGCTTCCA-CTTGGG-GCTAG----AGACCTACTCTT----TATGGTCCTTCTCTTGCTACTAATCGCAGAAAATTGAAATAGGTGCTCT-AGATACGGCAGTGATCATTGGCCCCAGAATGCTCCTAGAGCAAGGCATGATATATATGGATG----CATCAGACTAGATGAAGAGATGTATTATTAATTAGCTTTTCGGAAAACAAACAGCAGATGTGTTCACATTTCAGCTCGGTGGGATATTTCATTACTTTTTAATGTGCGCACACTTAAGTAAAAAGAG-AAAACAAACCATACAAAGCATCAGATTGACTAAAAGAGA-AGCTC--------CATATTGAAAATTTTTTGCAGGGTACGAGATGGAGCTTG-AATGAGA--GAGGG--------ATG-GAAAGAGAGA----------------------------GAG--AGAACGCTTTTTCCAACACCTAATGTTGCAAGGAAGAGTTGTATTAATAAGCAGGTTTTAGGAAAA-----------CTGTAAAGATCAACATC i calJac3.chr5 C 0 C 0 s mm10.chr11 99448669 849 + 122082543 -AGAGAAGAAATGGGCAGGGATTTAGTTTTAAAATGTATGTCTATGTTTTTTGAACAATCCAAATTTAGTATTTTTTTTTTCTTTAAAGCAAGCAAGTGAC-AGTTATTCACCCCATCTT----------------------------------------------------TTTGTCTC---------------TCATGATACTT-CTCCTTAACACAGAGAACTATCCTAGGTCTCACATCTGGAAGAGATCAATCTCACAGTGAGGAGG----------TCACTTTGCAAACGAGATGGCA---GAAGCATCTGTGGGTTAGTGAC-----------TTCCCTGTAGCAACATTGCAAACATGGGAAGTTG---AGATTAGATAACACAATATTTGCTCTCTAGATTGATTTTTTGCTC-TTTGTGTGACTTAGGGAAACTCCTTTGCAAACACCACCCTGCTG-AGAAACAACACTC---TCAATTAAATCGTTGGTTAATAGGC---CACTATAAAAGTTCAATATAAGCCCAGTGCC-TTCTATTTTTCCA-TTCAGATGCTGGAGGAAGATCTACTCTTTCCATGTGGTC------------CTAATAGTACAAAATTGGATCCGATGCTCTAA---------GTCAACATTGGC-CCAGAATCTTCCCAAGGCAAAGCATAATGCACATGAAAA----CATTACATGAGATGAAGAGATGTATTATTTATTAGCTTTTCAGAACACA-GTGGCAGATGTGTTCGTGTTACAGAGCAGAGGGCTGTTTGGTTCTT---------------------------------------ACCTTTGAGGGCGTTCTATTGACTAAGAGAGCTCCCTC--------CACACTGCA-------TGAAGC---CAGAAGGTATATTGAGAATGGGCTGGGGG--------ACGTGAGGAAGGGA----------------------------GTGGAGGACAGATGTGGCCAAGATACACTATG------------TGCATGAATAAAAA--TTTTCAAAGAGATGATATTCTACTGTTAATAGTAACAAT i mm10.chr11 I 583 I 390 s canFam3.chr9 39272863 1034 - 61074082 AAGGGAAGAAGTGATTAGTGGTTCAGTTTTATAATGTCCTTTCAT-----TTGAACAGCCCAAACTTAGTATTTTTGAAAAT----GAATAAGCAAGTGGC-AATTACACACTGTGTGTGTTGTTTTTCATGGTGCttatttatttatttcacttaagtatttatttatttatttatttCAAATAAGTATTTATTTCATGGTGCTTATTTTTAAaaacaaagaac--tgtaggctctcatgtctggaagaaact---ttgaaaattatgtaggtcatgtttctcattttacaaacaaaaaggctgtggGGGTGTTCAGAGATTATTTGTTGGGGCATCTGTTGCCTATAGCAACAATGCAAATATAGGAAGTTGTTCAACTTAATCAACATAATGTTTGCTCTCTATATTGATTTTCAGTAAATTTGCCTGACCCAGGAAAGCTG-ATTGCAAACAGTACCCTGATAAGTAAATAGAACTCTCACTAGTAGAATTACTGCTTAAAAGGCCAACAATATAA------ATTATATGCCCTATATG-TTTC-AGTTTCCACCCTGGG-GCTAA----AGACCTGCTCTTTTAATATCTTCCTTCATTTGTTCCTATTAGCACAAAGTAGAAGTAGATGCTCTATGATGTGGCAATGATCACTGGCACCAGAATATCACTCAAACAAGGCACAGTGTACATGGATGGATACATCAGACCAGATGAAGAGATGTATTATTAATTAGTATTTTGGAACACAAACAGCATATGTGTTCACATTTCAGCTTGGTGGGGTATGTCATCACTTTTTAATGTGCACACATTTAAGTTTTAA---------AAACCATAGAAAGCAGATTATTGATTAAAAGAGA-AGCTCTAGACGCTTATATTGAAAATTTGTTGTGGGGAATAGGATAGAGCTGGAAATGAGG--Gagagagaaagaaata-aaaagagagataaagaaagagaacaagaaaggaagattgaaagaGAATAAGTTTTTCAACATCTAATTTTGAAAGGAGGAGTTG------TAAACAGGTTTTAGGAAAA-TG-------TCTATAAAGATCAACATT i canFam3.chr9 C 0 C 0 a score=47271.000000 s hg38.chr17_JH159146v1_alt 44320 13 + 278131 TTCTGggctgggc s panTro4.chr17 66164164 13 - 82630442 TTCTGggctgggc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24693008 13 - 73212453 TTCTGggctgggc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47913004 13 - 81552678 TTCTGggctgggc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53026057 13 + 80904711 TTCTGggccgggc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52548934 13 + 80997621 TTCTGggccgggc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47594053 13 + 74645514 TTctgggcggggc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9860429 13 - 75148670 TTCTGggccgggc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112706000 13 + 159171411 TTCTGggctgggc i calJac3.chr5 C 0 C 0 s canFam3.chr9 39273897 13 - 61074082 TTGTGAACTAGGC i canFam3.chr9 C 0 I 731 e mm10.chr11 99449518 390 + 122082543 I a score=1195602.000000 s hg38.chr17_JH159146v1_alt 44333 434 + 278131 gtggtggctcacacctgtaatcccagcacttcgggaggctgaggtgagcggattgcttgagcccaggagttcaaaaccagcctgggcaacatggtgaaaccccatctttacaaaaaatacagaatttagccaggcatggtagtgcgcgcctgtgat-cccatttactcgcaaggctgaggtgagaggatcccttgagcctggcaaattgaggctgcagtgagcggtgatcacgtcactgcactccagcct-gagcaacagagcaagacactgtctccaaacaaacaaacagaca----caaac----aaacaaacaaacgaac-----aTCAACGTCTTCTGAGTCAGGCAGTTGGCAAAAGATGAAATGAAGTTTTGACAACTGGTTTTTAAAAACAGAAACGTATCTGGGCAAATT----AAACTATTTATGATTTGCTGAGTGCCTCCTG s panTro4.chr17 66164177 438 - 82630442 gtggtggctcacacctgtaatcccagcacttcgggaggctgaggtgagcggattgcttgagcccaggagttcaaaaccagcctgggcaacatggtgaaaccccatctttacaaaaaatacagaatttagccaggcatggtagtgcgcgcctgtgat-cccatttactcgcgaggctgaggtgagaggatcccttgagcctggcaaattgaggctgcagtgagcggtgatcacgtcactgcactccagcct-gggcaacagagcaagacactgtctccaaacaaacaaacaaacaaacacaaac----aaacaaacaaacgaac-----aTCAATGTCTTCTGAGTCAGGCAGTTGGCAAAAGATGAAATGAAGTTTTGACAACTGGTTTTTAAAAACAGAAACGTATCTGGGCAAATT----AAACTATTTATGATTTGCTGAGTGCCTCCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24693021 426 - 73212453 gtggtggctcacacctgtaatcccagcactttgggaggccgaggtgagcggattgcttgagctcaggagctcaaaaccagcctgggcaacatggtgaaaccccatctttacaaaaaatacaaaatttagccaggcatggtagtgcatgcctgtggc-tccatctactcgggaggctgaggtgagaggatcccttgagcctggcaaattgaggctgcagtgagctgtgatcacgccactgcactccagcct-gggcaacagagccagacactgtctccaaacaaacaaa----------caaac----aaac--aCAAACGAAC-----ATCAACGTCTTCTGAGTTGGGCAGTTGGCAAAAGATGAAATGAAGTTTTGACAACTGGTTTTTAAAAACAGAAACATATCTGGGCAAATT----AAACTATTTACGATTTGCTAAGTGCCTCCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47913017 434 - 81552678 gtgatggctcacacctgtaatcccagcactttgggaggccgaggcgagcggattgcttgagctcaggagttcaaaaccagcctgggcaacatggtgaaaccccatctttacaaaaaatacaaaatttagccaggcatggtagtgcacgcctgtgat-cccatctactcgggaggctgaggtgagaggatccctagagcctgtcaaattgaggctgcagtgagctgtgatcatgccactgcactccagcct-gggcaacagagcaagacactgtcttcaaacaaacaaacaaaca----aacac----aaagaaaCAAACGAAC-----ATCGACATCTTCTGAGTCAGGCAGTTGGCAAAAGATGAAATGAAGTTTTGACAACTGGTTTTTAAAAACAGAAACGTATCTGGGCAAATT----AAGCTATTTACGATTTGCTGAGTGCCTCCTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53026070 423 + 80904711 gcggtggctcacacctgtaatcccagcactttgggaggccgaagcgagctgattgcttgagctcaggagttcaaaa----cctgggcagcatggtgaaaccccatctttacaaaatatacaaaatttagccaggcatggtggtgcacgtctgcagtccccagctacttgggaggctgaggtgagaggatccctcgaacctgggaaattgaggctgccgtgagctgtgatcacgccactgcactccagcctggggcaacagagcaagacactgtctc----caaacaaacaagca----caaac----aaacaaacaaaTGAAC-----ATCAACGTCTTCTGAGTCAGGCAGTTGGCAAAAG-----ATGAAGTTTTGACAACTGTTTGTTAAAAACAGAAACGTATCTGGACAAATT----AAACTATTTACGATTTGCTGAGTTCCTCCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52548947 427 + 80997621 gcggtggctcacacctgtaatcccagcactttgggaggccgaagcgagctgattgcttgagctcaggagttcaaaa----cctgggcagcatggtgaaaccccatctttacaaaatatacaaaatttagccaggcatggtggtgcacgtctgcagtccccagctactcgggaggctgaggtgagaggatccctcgaacctgggaaattgaggctgccgtgagctgtgatcacgccactgcactccagcctggggcaacagagcaagacactgtctccaaacaaacaaacaagca----caaac----aaacaaacaaaTGAAC-----ATCAACGTCTTCTGAGTCAGGCAGTTGGCAAAAG-----ATGAAGTTTTGACAACTGTTTGTTAAAAACAGAAACGTATCTGGACAAATT----AAACTATTTACGATTTGCTGAGTTCCTCCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47594066 426 + 74645514 gcggtggctcacacctgtaatcccagcactttgggaggctgaagcgagctgattgcttgagctcaggagttcaaaa----cctgggcaacatggtgaaaccccatctttacaaaatatacaaaatttagccaggcatggtggtgcacgtctgcagtccccagctactcgggaggctgaggtgagaggatcccttgagcctgggaaattgaggctgccgtgagctgtgatcatgccactgcactccagcctggggcaacagagcaagacactgtctccaaacaaacaaacaaaca----aacac-----aacaaacaaacgaac-----atcaacGTCTTCTGAGTCAGGCAGTTGGCAAAAG-----ATGAAGTTTTGACAACTGTTTGTTAAAAACAGAAACGTATCTGGACAAATT----AAACTATTTACGATTTGCTGAGTTCCTCCTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9860442 431 - 75148670 gcggtggctcacacctgtaatcccagcactttgggaggccgaagcgagctgattgcttgagctcaggagttcaaaa----cctgggcaacatggtgaaaccccatctttacaaaatatccaaaattttgccaggcatggtggtgcacgtctgcagtccccagctactcgggaggctgaggtgagaggatccctcgaacctgggaaattgaggctgcagtgagctgtgatcacaccactgcactccagcctggggcaacagagcaagacactgtctccaaacaaacacacacaca----cacacaaacaaacaaacaaatgaac-----aTCAACGTCTTCTGAGTCAGGCAGTTGGCAAAAG-----ATGAAGTTTTGACAACTGTTTTTTTAAAACAGAAACGTATCTGGACAAATT----AAACTATTTACGATTTGCTGAGTTCCTCCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112706013 433 + 159171411 acggtggctcatgcctgtaatcccagcactttgtgaggtcgaggtgagtggattgcttgagtgcagaagttcaaaaccagcctgggaaacatgatgaaaccccatctctacaaaa---acaaaatttagctaggcatggtggtgcatgcctgtagt-cccagctactcaggaggctgaggtgagaggatcccttgagactgggaaattgaggctgcactgagctgtgatcatgccactgcactccag--------aacagagcaagacactatctccaaacaaaCGAACaccga----ccaac----caaccaaccaaccaaccaacaaacAATGTCTTATGAGTCAGGCAGTTGGCAAAAGATGAAATGAAGTTGTGACAACTGGTTTTTAAAGACAGAAACATATGTGGGCAAATTAATCAAACTATTTATGATTTGTTGAGTGCCTCCTG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39273910 731 - 61074082 I e mm10.chr11 99449518 390 + 122082543 I a score=589145.000000 s hg38.chr17_JH159146v1_alt 44767 177 + 278131 GGTGGTCAGACACTGCTCTGGAGGAGCTTGTGGTCTGGCAGAGGAAATGCTAACAAGGGCATGTATGAAAGGAGGAAGCAAAAGTCC----TTAGAAAGTGCTGTGAAAAATC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGCTTTCTAGAGGGGTGGCTTTCAGAGCAAG s panTro4.chr17 66164615 177 - 82630442 GGTGGTCAGACACTGCTCTGGAGGAGCTTGTGGTCTGGCAGAGGAAATGCTAACAAGGGCATGTATGAAAGGAGGAAGCAAAAGTCC----CTAGAAAGTGCTGTGAAAAATC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGCTTTCTAGAGGGGTGGCTTTCAGAGCAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24693447 176 - 73212453 GGTGGTCAGACACTGCTCTGGAGGAGCTTGTGGTCTGGCAGAGGAAATGCTAACAAGGGCGTGTATGAAAGGAGGAAGCAAGAGTCC----CCAGAAAGTGCTGTGAAAAATC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAG-CG-GGAAGGCTTCCTAGAGGGGTGGCTTTCAGAGCAAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47913451 177 - 81552678 GGTGCTCAGACACTGCTCTGGAGGAGCTTGTGGTCTGGCAGAGGAAATGCTAACAAGGACATTTATGAAAGGAGGAAGCAAGACTCC----CCAGAAAGTGCTGTGAAAAATC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGCTTCCTAGAGGGGTGGCTTTCAGAGCAAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53026493 177 + 80904711 GGTGGTCAGACACTGCTCTGGAGGAGCCTGTGGTCTGGCAGAGGAAATGCTCACAAGGGCATATATGAAAGGAGGAAGCAAGAGTCC----CCAGAAAGTGCTGTGAAAAGTC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGTTTCCTAGACGGGTGGCTTTCAGAGCAAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52549374 177 + 80997621 GGTGGTCAGACACTGCTCTGGAGGAGCCTGTGGTCTGGCAGAGGAAATGCTCACAAGGGCATGTATGAAAGGAGGAAGCAAGAGTCC----CCAGAAAGTGCTGTGAAAAGTC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGTTTCCTAGACGGGTGGCTTTCAGAGCAAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47594492 177 + 74645514 GGTGGTCAGACACTGCTCTGGAGGAGCTTGTGGTCTGGCAGAGGAAATGCTCACAAGGGCATGTATGAAAGGAGGAAGCAAGAGTCC----CCAGAAAGTGCTGTGAAAAGTC----------AGGAGGAGGAGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGTTTCCTAGACAGGTGGCTTTCAGAGCAAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9860873 177 - 75148670 GGTGGTCAGACACTGCTCTGGAGGAGCCTGTGGTCTGGCAGAGGAAATGCTCACAAGGGCATGTATGAAAGGAGGAAGCAAGAGTCC----CCAGAAAGTGCTGTGAAAAGCC----------AGGAGGAGGTGAGGCTGAAAGCTGAAGAAGCCA-GGAAGGTTTCCTAGACAGGTGGCTTTCAGAGCAAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112706446 188 + 159171411 GAAGGTCAGACACTGCTCTGGAGGAGCTTGTGTTCTGGCAGAGGAAATGCTAACAAAGGCATGTATGAAAGGAGGAAGGAAGAGTCC----CCAGAAAGTGCTGCAAAAAATCTGCACTGGAAATGAGGAAGTGAGGCTGAAAGCTGAAGAAGCCAGGGAAGGCTTCCTACAGGGGTGGCTTTCAGAGCAAG i calJac3.chr5 C 0 M 723 s mm10.chr11 99449908 177 + 122082543 GGTGGTC---CGCT--TCTTGGGGAGATGGTGGTC-AGCTGAGGAAATAGTGCCATGGGGGTGAATCAGTGGAAAAAGCAAAGGTTtagagacagacagtgctatgaaaactc--------agaggcggggagaagcctgcaggctgaagaaggcagggaaggctttgcagaacagtgacatccag-gcgag i mm10.chr11 I 390 C 0 e canFam3.chr9 39273910 731 - 61074082 I a score=705530.000000 s hg38.chr17_JH159146v1_alt 44944 276 + 278131 -----ATGTGCAACCTCTCCCTAGGATCTGGAGTCCTAGAGCAGGT-GGGGAAGAGCAGGGCACTTACTCACCCCCAGACCTTTCCTGGAGGTGTGATCTGGGCTTGGAT-GGGAAGCACCGGCATGTGAAA-GGCCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCACTGAGTAGAGAAGGGAGGAAAGGAGGCTATAAAGGTCACATTCATTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAATAAAGACCGCTCAC s panTro4.chr17 66164792 276 - 82630442 -----ATGTGCAACCTCTCCCTAGGATCTGGAGTCCTAGAGCAGGT-GGGGAAGAGCAGGGCACTTACTCACCCCCAGACCTTTCCTGGAGGTGTGATCTGGGGTTGGAT-GGGAAGCACCGGCATGTGAAA-GGCCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCAGTGAGTAGAGAAGGGAGGAAAGGAGGCTATAAAGGTCACATTCATTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAATAAAGACCGCTCAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24693623 277 - 73212453 -----ATGTGCAACCTCTCTCTAGGATCTGGAGTCCTAGAGCAGGT-GGGGAAGAGCAGGGCACTTACTCACCCCCAGACCTTTCCTGGAGGTGTGATCTGGGCTTGGAT-GGGAAGCACCAGCATGTGAAAGGGCCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCGGTGAGTAGAGAAGGGAGGAAAGGAGGCTATAAAGGTCACATTCATTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAATAAAGACTGCTCAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47913628 277 - 81552678 -----ATGTGCAACCTCTCTCTAGGATCTGGAGTCCTAGAGCAGCTGGGGGAAGAGCGGGGCACTTACTCACCCCCAGACCTTTCCTGGAGGTGCGATCTGGGCTTGGAT-GGGAAGCACCAGCATGTGAAA-GGCCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACAGGTGAGTAGAGAAGGGAGGAAAGGAGGCTAAAAAGGTCATATTCATTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAATAAAGACTGCTCGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53026670 277 + 80904711 -----ATGTGCAGCCTCTCTCTAGGATCTGCAGTCCTAGCGCAGGT-GGGGAAGAGCAGGGCACTTACTCAGCCGCAGACCTTTCCTGGAGGTGTGATCTGGGCTTGGAT-GGGAAGCGCCAGCATGTGACAGGGTCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCGGTGAGTAGAGAAGAGAGGAAAGGAGGCTAAAAAGGTCCCATTCGTTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAAGAAAGACTGCTCAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52549551 277 + 80997621 -----ATGTGCAGCCTCTCTCTAGGATCTGCAGTCCTAGCGCAGGT-GGGGAAGAGCAAGGCACTTACTCAGCCGCAGACCTTTCCTGGAGGTGTGATCTGGGCTTGGAT-GGGAAGCGCCAGCATGTGACAGGGTCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCGGTGAGTAGAGAAGAGAGGAAAGGAGGCTAAAAAGGTCCCATTCGTTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAAGAAAGACTGCTCAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47594669 277 + 74645514 -----ATGTGCAGCGTCTCTCTAGGATCTGCAGTCCTGGCGCGGGT-GGGGAAGAGCAGGGCACTCACTCAGCCGCAGACCTTTCCTGGAGGTGTGACCTGGGCTTGGAT-GGGAAGCGCCAGCATGTGacagggtcctgaggcagggAAATGAGCAGAGGTGGGCTGGAAAGGAAACGGTGagtaaagaagagaggaaaggaggctAAAAAGGTCACATTCATTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAAGAAAGACTGCTCAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9861050 278 - 75148670 -----ATGTGCAGCGTCTCTCTAGGATCTGCAGTCCTAGCGCAGGT-GGGGAAGAGCAGGGCACTTACTCAGCCGCAGACCTTTCCTGGAGGTGTGATCTGGGCTTGGATGGGGAAGCGCCAGCATGTGACAGGGTCCTGAGGCAGGGAAATGAGCAGAGGTGGGCTGGAAAGGAACCGGTGAGTAGAGAAGAGAGGAAAGGAGGCTAAAAAGGTCCCATTCGTTCCATCTCTTCGTGTCTTAACTCTGAAAGAGTCAGAGAACTCCAAAGAAAGACTGCTCAC i chlSab2.chr16 C 0 C 0 s mm10.chr11 99450085 252 + 122082543 acatgatttgca---------taagatttggagtcatagagacagt-gagggagagtaGGGTCCTTGTTCA--CCAAGACCCTCAGT-GACCTGTGCCCTGGGTATGACA-GGGATGGGCCAGCAGG------GGCTCAAGGACCATGCAATGGG--AAGGTGGGTTGGAAAGCAAACA--GACTAGGAAAGGCATGAAACCTGTCTAAAAAG---TCATTTATTACATCTTTTAA-----CAACACACAGAGAGATGGAGCGTTCCAAATATAGATCACTATC i mm10.chr11 C 0 C 0 e canFam3.chr9 39273910 731 - 61074082 I e calJac3.chr5 112706634 723 + 159171411 M a score=200476.000000 s hg38.chr17_JH159146v1_alt 45220 55 + 278131 ATTTTAACGTGGTTGG-TAAGGAAGATGAGGGTCTGT-GGGATGTGGGAGCAGAACA s panTro4.chr17 66165068 55 - 82630442 ATTTTAACGTGGGTGG-TAAGGAAGATGAGGGGCTGT-GGGATGTGGGAGCAGAACA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24693900 54 - 73212453 -TTTTAACATGGGTGG-TAAGGAAGATGAGGGGGTGT-GAGATGTGGGAGCAGAACA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47913905 55 - 81552678 ATTTTAACGTGGGTGG-TAAGGAAGATGTGGGGGTGT-GGGATGTGGGAGCAGAACA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53026947 55 + 80904711 GTTTTAACACGGGTGG-TAAGGAAGATGAGGGGGTGT-GGGATGTGAGAGCAGAACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52549828 55 + 80997621 GTTTTAACACGGGTGG-TAAGGAAGATGAGGGGGTGT-GGGATGTGAGAGCAGAACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47594946 55 + 74645514 ATTTTAACGCAGGTGG-TAAGGAAGATGAGGGGGTGT-GGGATGTGGGAGCAGAACC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9861328 55 - 75148670 ATTTTAACACGGGTGG-TAAGGAAGATGAGGGGGTGT-GGGATGTGGGAGCAGAACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112707357 57 + 159171411 ATTTTAATGCAGGTGGATAAGGAAGATGAGGGAGTGTGGGGGTGCGGGATCAGAGCA i calJac3.chr5 M 723 C 0 s mm10.chr11 99450337 56 + 122082543 TTTTTAATGTACATGGATAAGAGAGATCAGGAAGTGT-GGAACGTAAGACCAGAACA i mm10.chr11 C 0 I 86 s canFam3.chr9 39274641 56 - 61074082 ATTTTACTGTGGGTGGATAATAAAGATGAACTGGTGT-GGGATGTGAAAGTAGAACC i canFam3.chr9 I 731 C 0 a score=17973.000000 s hg38.chr17_JH159146v1_alt 45275 6 + 278131 GTGAGA s panTro4.chr17 66165123 6 - 82630442 GTGAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24693954 6 - 73212453 GTGAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47913960 6 - 81552678 GCGAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53027002 6 + 80904711 GTGAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52549883 6 + 80997621 GTGAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47595001 6 + 74645514 GTGAGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9861383 6 - 75148670 GTGAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112707414 5 + 159171411 GTGAG- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39274697 6 - 61074082 CTGAGA i canFam3.chr9 C 0 I 21 e mm10.chr11 99450393 86 + 122082543 I a score=1352078.000000 s hg38.chr17_JH159146v1_alt 45281 470 + 278131 AAACAT------CTGAAAGCCACCCTGCTAGGAAGCCTTCCCCGGTTTCTTCGGCTTTCAGCCTCACTTCCTCCTGATTTTTCACAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCCTATGGGCCCTTGTTAGTACTTCTTCTGCCGGACCCCAGGGAACTCTGAAGATAAATAATTGCAggctgggcgcagtggttcacgcctgtaa-----------------gccgaggtgggaggattgcttgaatcc---agttcaagaccagccctgtaaacatagtgagactccttctctacaaaacatt-aaa----------------------------aaaaaaaaaaaa-tagcagggtgcggtggcacgcacttgtagttccagctactttggaggctgaagtgggaggattgcttgagcccagaaggtcgaggctgc----agtgagtggtgactgtgtcactgaactccagtct------ggggaacagagcaagaatctgtctctaaaaaatcaacaaaaaTAATTGC s panTro4.chr17 66165129 471 - 82630442 AAACAT------CTGAAAGCCACCCCGCTAGGAAGCCTTCCCCGGTTTCTTCGGCTTTCAGCCTCACTTCCTCCTGATTTTTCACAACACTTCCCAGGGATTCTTGTTTGCTCCTTTCCTATGGGCCCTTGTTAGTATTTCTTCTGCCGGACCCCAGGGAACTCTGAAGATGAATAATTGCAggctgggcgcagtggttcacgcctgtaa-----------------gccgaggtgggaggattgcttgaatcc---agttcaagaccagccctgtaaacatagtgagactccttctctacaaaacatt-aaa----------------------------aaaaaaaaaaaaatagcagggtgtggtggcacgcacttgtagttccagctactttggaggctgaagtgggaggattgcttgagcccagaaggtcgaggctgc----agtgagtggtgactgtgtcactgaactccagtct------ggggaacagagcacgaacctgtctctaaaaaatcaacaaaaaTAATTGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24693960 477 - 73212453 AAACAT------CTGAAAGCCACCCAGCTAGGAAGCCTTCTCCGGTTTCTTCGACTTTCAGCCTCACTTCCTCCCGATTTTTCACAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCCTATGGGCCCTTGTTAGTATTTCTTCTGCCAGATCCCAGGGAACTCTGAAGATAAATAATGGCAggctgggcgcagtggctcacgcctgtaa-----------------gccgaggtgggaggattgcttaaatcc---agttcaagacgagccctgtaaacatagtgagactccttctctacaaaacatt-aaa----------------------------aaaaaaaaaaaaatagtagggtgtggtggcacgcacttgtagttccagctacttaggaggctgaagtgggaggattgcttgagcctagaaggtcgaggctgc----agtgactggtgactgtgtcactgaactccagtctgttccaggggaacagagcaagaccctgtctctaaaaaatcaacaaaaaTAATTGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47913966 467 - 81552678 AAACAT------CTGAAGGCCACCCCTCTAGGAAGCCTTCCCCGGTTTCTTCGGCTTTCAGCCTCACTTCCTCCCGATTTTTCACAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCCTATGGGCCCTTGTTAGTATTTCTTCTGCCGGACCCCAGGGAACTCTGAAGATAAATAATTGCAggctgggcgcagcggctcacgcctgtaa-----------------gccaaggtgggaggatcgcttaaatcc---agttcaagaccagccctg-aaacatagtgagactccttctctacaaaacatt-aaa----------------------------aaaaaaaaaaaaatagcagggtgtggtggcatgcacttgtagttccag---cttaggaggctgaagtgggagggttgcttgagcccagaaggtcgaggctgc----agtgagtggtgactgtgtcactgaactccagtct------ggagaacagagcaagaccctgtctctaaaaaatcaacaaaaaTAATTGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53027008 505 + 80904711 AAACATCTTGCCCTGAAAGCCACGCCTCTAGGCAGCCTTCCCTGGTTTCTTCGGCTTTCGGCCTCACTTCCTCCTGATTTTTCCCAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCATATGGGCCCTTGTTAGTATTTCTTCTGCCAGCCCCCAGGGAACTGTGAAAATAAATAACTGCAggctgggtgcggtggctcaagcctgtaa-----------------gccgaggtgggaggatcgcttaaatcc---atttcaagaccagccctggaaacatagtgagactccttctctacaaaacatt-aaaaaaacccaaaaaacaaaacaaacaaaacaaaacaaaacaaaaagcagggtgtggtggcaggtgcttgtagttccagctacttaggaggctgaagtgggaggattgcttgagcccagaaggtcgagactgc----agtgagtggtgactgtgtcactgaactccagact------ggggaacagagcaagatcctgtctctaaaaaatcaacaaaaagaaTTGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52549889 506 + 80997621 AAACATCTTGCCCTGAAAGCCACGCCTCTAGGAAGCCTTCCCTGGTTTCTTCGGCTTTCGGCCTCACTTCCTCCTGATTTTTCCCAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCATATGGGCCCTTGTTAATATTTCTTCTGCCAGCCCCCAGGGAACTGTGAAAATAAATAACTGCAggctgggtgcggtggctcaagcctgtaa-----------------gccgaggtgggaggatcgcttaaatcc---atttcaagaccagccctggaaacatagtgagactccttctctacaaaacattaaaaaaaaaacaaaaaacaaaacaaacaaaacaaaacaaaacaaaaaacagggtgtggtggcaggtgcttgtagttccagctacttaggaggctgaagtgggaggattgcttgagcccagaaggtcgagactgc----agtgagtggtgactgtgtcactgaactccagact------ggggaacagagcaagatcctgtctctaaaaaatcaacaaaaagaaTTGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47595007 481 + 74645514 AAACATCTTGCCCTGAAAGCCACCcctctaggaagccttccctggttTCTTCGGCTTTCGGCCTCACTTCCTCCTGATTTTTCCCAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCATATGGGCCCTTGTTAGTATTTCTTCTACCAGCCCCCAGGgaactctgaaaataaataactgcaggctgggcgcggtggctcacacctgtaa-----------------gccgaggtgggaggatcgcttaaatcc---atttcaagaccagccctggaaacatagtgagactccttctctacaaaacatttaaaaaa-------------------------aaaaaaaaaaaaaaagcagggtgtggtggcaggtgcttgtagttccagctacttaggaggctgaagtgggaggattgcttgagcccagaaggtcgagacTGT----AGTAAGTGGTGACTGTGTCACTAAACTCCAGACT------agggaacagagcaagatcctgtctctaaaaaatcaacaaaaagaatTGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9861389 500 - 75148670 AAACATCTTGCCCTGAAAGCCACCCCTCTAGGAAGCCTTCCCTGGTTTCTTCGGCTTTCAGCCTCACTTCCTCCTGATTTTTCCCAGCACTTCCCAGGGATTCTTGCTTGCTCCTTTCATATGGGCCCTTGGTAGTATTTCTTCTGCCAGCCCCCAGGGAACTGTGAAAATAAATAACTGCAggcagggtgcagtggctcatgcctgtaa-----------------gccgaggtgggaggatcgcttaaatcc---atttcaagaccagccctggaaacatagtgagactccttctctacaaaacatt-aaaaaaacccaaaaaacaaaacaaac-----aaaacaaaacaaaaaacagggtgtggtggcaggtgcttgtagttccagctacttaggaggctgaagtgggaggattgcttgagcccagaaggtcgagactgc----agtgagtggtgactgtgtcactgaactccagact------ggggaacagagcaagatcctgtctctaaaaaatcaacaaaaagaaTTGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112707419 496 + 159171411 AAACATCTCTCTCTGAAAGCCACCCCTCTAGGAAGCCTTCCCTGGTTTCTTTGGCTTTCAGCCTCACTTCCTCCTGATTTTTTGCAGCCCTTCCCAGGGTCCCTGGCTTCCTCCTTTCATATGGGGCCTTGCTAGTGTTTCCTCTGCCGGACCCCAGGGAACTCTGAAGATAAATAATTGCAgaccgggtgtggtggctcatgcctgtaatcctagcactttgggaggccaaggtgggaggattgcttaaatccaggagttcaagaccaatcctggcaacatagtgaaaccccttctctagcaaaaatt-aa-----------------------------aagaaaaaaaaattagcggggtatgatggcatgcactggcagttccagctacttaggaagctgaagtgggaggattgcttgggcctagaaggtcgaggctacagtgagtgagtggtgaccgtgtcactgaactccagtct------ggggaacagagcaagaccctgtctctaaaataac----aaaGTAATTGC i calJac3.chr5 C 0 C 0 e canFam3.chr9 39274703 21 - 61074082 I e mm10.chr11 99450393 86 + 122082543 I a score=228977.000000 s hg38.chr17_JH159146v1_alt 45751 90 + 278131 ATGAGTCAGGTCAATCTGCAGGCTTAGGGGGCCAGGTGATATGT--TCATTGCGTAGTTGGAAAATAGCATGTGATAAGGTAATCAGTCCGG s panTro4.chr17 66165600 90 - 82630442 ATGAGTCAGGTCAATCTGCAGGCTTAGGGGGCCAGGTGATATGT--TCATTGCGTAGTTGGAAAATAGCATGTGATAAGATAATCAGTCCGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24694437 90 - 73212453 ATGAGTCAGGTCAATCTGCAGGCTTAGGGGGCCAGGTGATGTGT--TGATTGCATAGTTGGAAAGTAGCATGTGATGAAGTAATCAGTCCGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47914433 90 - 81552678 ATGAGTCAGGTCAATCTGCAGGCTTAGGGGGCCAGGTGATGTGT--TCATTGCGTAGTTGGAAAGTAGCATGTGATGAGGTAATCAGTCCGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53027513 90 + 80904711 ATGAATCAGGTCAATCTGCAGGCTTAGGGGACCAGGTGATGTGT--TAATTGCATAGTTGGACAGCAGCATGTGATGAGGTAACCAGTCCGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52550395 90 + 80997621 ATGAATCAGGTCAGTCTGCAGGCTTAGGGGACCAGGTGATGTGT--TAATTGCATAGTTGGACAGCAGCATGTGATGAGGTAACCAGTCCGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47595488 90 + 74645514 ATGAATCAGGTCAATCTGCAGGCTTAGGGGACCAGGTGATGTGT--TAATTGCATAGTTGGACAGCAGCATGTGATGAGGTAACCAGTCCGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9861889 90 - 75148670 ATGAATCAGGTCAATCTGCAGGCTTAGGGGACCAGGTGATGTGC--TAATTGCATAGTTGGACAGCAGCATGTGATGAGGTAACCAGTCCGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112707915 26 + 159171411 ATGAGCCAGGTCAATCTGTAGGCTTG------------------------------------------------------------------ i calJac3.chr5 C 0 C 0 s canFam3.chr9 39274724 92 - 61074082 ATGAGTTAAGTCAGCCTTCAGGCTCTGGGGTCCAGGTTATGTGTAATTATCGAGTTGGTGTGATATGCTATATGCTAAGATAATAAACTCTT i canFam3.chr9 I 21 C 0 e mm10.chr11 99450393 86 + 122082543 I a score=3914634.000000 s hg38.chr17_JH159146v1_alt 45841 1014 + 278131 GGATAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACTGTGAGGAGCCCCATTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAGCGTTGAAACA-GGGTTCCCTAGTGACCACAACCGTTGTAGACAGT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCGTAGCCTTATAAATCCGGGGCTTTACACCTTGCTGGGGACTTACTAGGTGTC-AATGGAGATGTGGTTTATTAATTGTATTCTTTTTTAAGAATAAGTTGCTCCTA-TTTGGCTTTCACAATGCAGC------------------------TAATATTTTTGATGCCTCAG-----------------GTTCTATGAAGGCCTCATTGTTTGGCGTTTTCTACTTTTTTAAGCAATGAAAATGTG-GAAAAGCCTGGAGCAATTTCTTATGCGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGTACAGGCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTATCA--------------TCTGAAAGCATGGAGTAATTAAGGAGCAATATATTTGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTCTAGGCAATTTGATCTATACCAATAATTCACTTTCTTCCCTACAGCAGGACTCATTTTGTTCCTAAGTCATTGGAGGCTGTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTTGAGCCACCATTTATGTTTATTGATCGTAATAAGTATGGCATTCAACCAGAATTTGGATTCAGGTTTTTAATATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGCATTGTTAAAACTGAAA-AACTATACAGCAAATTTGACCCTAGATACAATGATCAATCAATCGAAGAGCAAAAATGGAAACCAGTTATTCT-GGCTGGTCACAATCTCGTATTAAA-----------A s panTro4.chr17 66165690 1014 - 82630442 GGATAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACTGTGAGGAGCCCCATTTAACCTGATTTAGAAAAGGGAAGGCGGAGAAGCATCAGCGTTGAAACA-GGGTTCCCTAGTGACCACAACCGTTGTAGACAGT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCCTAGCCTTATAAATCCGGGGCTTTACACCTTTCTGGGGACTTACTAGGTGTC-AATGGAGATGTGGTTTATTAATTGTATTCTTTTTTAAGAATAAGTTGCTCCTA-TTTGGCTTTCACAATGCAGC------------------------TAATATTTTTGATGCCTCAG-----------------GTTCTACGAAGGCCTCATTGTTTGGCGTTTTCTAGTTTTTTAAGCAATGAAAAGGTG-GAAAAGCCTGGAGCAATTTCTTATGCGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGTACAGGCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTATCA--------------TCTGAAAGCATGGAGTAATTAAGGAGCAATATATTTGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTCTAGGCAATTTGATCTATACCAATAATTCACTTTCTTCCCTACAGCAGGACTCATTTTGTTCCTAAGTCATTGGAGGCTGTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAATGCACATTATTTACTACAGTGTGTGTTGAGCCACCATTTATGTTTATTGATCGTAATAAGTATGGCATTCAACCAGAATTTGGATTCAGGTTTTTAATATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGCATTGTTAAAACTGAAA-AACTATACAGCAAATTTGACCCTAGATACAATGATCAATCAATCGAAGAGCAAAAATGGAAACCAGTTATTCT-GGCTGGTCACAATCTCGTATTAAA-----------A i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24694527 1027 - 73212453 GGATAGTCCAGCTTGGGGTGTCAGAGGGTCAGGAGG-AGCAGCTCCACGGTGAGGAGCCCCA-TTAACTTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAGCGTTGAAACA-GGATTACCTAGTGACCACAACTGTTGTAGACAGT--ACACCTTTTTGTGGTTTAGAGTTTTATTCCTGTAATACGTTTCCTAGCCTTATAAATCCGGGGTTTTACACCTTTCTGGGGACTTACTAGGTGTC-AATGGAGATATGGTTTATTAATTGTATTCTTTTTTAAGAATGAGTTGCTCCTG-TTTGGCTTTCACAATGCAGC------------------------TAATATTTTTGATGCCTCAG-----------------GTTCTACGAAGGCCTCATTGTTTGGCGTTTTCTACTTTTTTAAGCAATGAAAAGGAA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACATGTATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACAGGCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTCTGAACGCATGGAGTAATTAAGGAGCAATATATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTCTAGGCAATTTGATCTATACCAATAATTCACTTTCTTCCCTACAGCAGGACTCATTTTGTTCCTAAGTCACTGGAGGCTGTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTTGAGCCAACATTTATGTTTATTGATCGTAATAAGTATGGCATTCAACCAGAATTTGGATTCAGGTTTTTAATATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGCATTGTTACAACTGAAA-AACTATACAGCAAATTTGACCCTAGATGCAATGATCAATCAATCGAAGAGCAAAAATGGAAACCAGTTATACT-GGCTGGTCACAATCTTGTATTAAA-----------A i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47914523 1039 - 81552678 GGATAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACTGTGAGGAGCCCCATTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAGCGTTGAAACA-GGATTCCCTAGTGACCGCAACCGTTGTAGACAGT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCCTAGCCTTATAAATCTGGGGCTTTACACCTTTCTGGGGACGTACTAGGTGTC-AATGGAGATGTGGTTTATTAATTATATTCTTTTTTAAGAATGAGTTGCTCTTA-TTTGGCTTTCACAATGCAAC------------------------TAATATTTTTGATGCCTCAG-----------------GTTCTATGAAGGCCTCATTGTTTGGCGTTTTCTACTTTTTTAAGCAATGAAAAGGTA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACGTATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACAGGCTGGTAGCTATGTATGCTTTTT-CAGAATAAATGCATCTCTGTGAAATGAACTGTCAGGAGGACTACAGGTTCTGAAAGCATGGAGTAATTAAGGAGCAATATATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTCTAGGCAATTTGATCTATACCAATAGCTCACTTTCTTCCCTGCAGCAGGACTCATTTTGTTCCTAAGTCATTGGAGGCTGTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTTGAGCCACCATTTATGTTTATTGATCATAATAAGTATGGCATTCAACCAGAATTTGGATTCAGGTTTTTAATATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGCATTGTTAAAACTGAAA-GACTATACAGCAAATTTGACCCTAGATGCAATGATCAATCAATCGAAGAGCAAAAATGGAAACCAGTTATTCT-GGCTGGCCACAATCTTGTATTAAAATGACTGATTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53027603 1045 + 80904711 GGAGAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACCGTGAGGAACCCCATTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAACGTTGAAACA-GGATTCCCTAGTGACCACAACCGTTGCAAATACT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCTTAGCCTTATAAATCCGGGGCTTTACACCTTCCTGGGGACTTACTAGGTGTC-AGTGGAGATGCGGTTTATTAATTGTATTCTTTTTAAAGAATGAGTTGCTCCTA-TTTGGCTTTCACAATGCAAC------------------------TAATATTTTTGATGCCTCAGGTTCTACGATGATTCTAGTTCTACGAAGGCCTCATTGTTGGGCGTTTTCTACTTTTTTAAGCAATGAAAAGGTA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACGGTCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTCTGGAAGCATGGAGTAATTAAGGAGCAATCTATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTGTAGGCAATTCGATCTATACCAATAATTCACTTTCTTCCCTACAGCAAGACTCATTTTGTTCCTAAGTCATTGGAGGCATTATTAGAGATTTATCTGTTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTGGAGCCACCATTTATATTCATTGATCGTAATAAGTATGGCATTAGACCAGAATTTGGATTCAGGTTTTTAAAATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGTATTGTTAAAACTGAAA-AACTATACAGCAAATTTGACTCTATATGCAATGATCTATCAATCGAAGAGTAAAAATGGAAACCAGTTACTCT-GGCTGGTCACAATCTTGTATTAAA-----------A i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52550485 1045 + 80997621 GGAGAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACCGTGAGGAACCCCATTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAACGTTGAAACA-GGATTCCCTAGTGACCACAACCGTTGCAAACACT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCTTAGCCTTATAAATCCGGGGCTTTACACCTTCCTGGGGACTTACTAGGTGTC-AGTGGAGATGCGGTTTATTAATTGTATTCTTTTTAAAGAATGAGTTGCTCCTA-TTTGGCTTTCACAATGCAAC------------------------TAATATTTTTGATGCCTCAGGTTCTACGATGATTCTAGTTCTACGAAGGCCTCATTGTTGGGCGTTTTCTACTTTTTTAAGCAATGAAAAGGTA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACGGTCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTCTGGAAGCATGGAGTAATTAAGGAGCAATCTATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTGTAGGCAATTCGATCTATACCAATAATTCACTTTCTTCCCTACAGCAAGACTCATTTTGTTCCTAAGTCATTGGAGGCATTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTGGAGCCACCATTTATATTCATTGATCGTAATAAGTATGGCATTAGACCAGAATTTGGATTCAGGTTTTTAAAATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGTATTGTTAAAACTGAAA-AACTATACAGCAAATTTGACTCTATATGCAATGATCTATCAATCGAAGAGTAAAAATGGAAACCAGTTACTCT-GGCTGGTCACAATCTTGTATTAAA-----------A i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47595578 1046 + 74645514 GGAGAGTCCAGTTTGGGATGTCAGAGGGTCAGGAGG-AACAGCTCCACTGTGAGGAGCCCCGTTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAGCGTTGAAACA-GGATTCCCTAGTGACCACAACCGTTGCAAACACT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTATAATATGTTTCTTAGCCTTATAAATCCGGGGCTTTACACCTTCCTGGGGACTTACTAGGTGTC-AGTGGAGATGCGGTTTAttaattgtattctttttaaagaatgagtTGCTCCTATTTTGGCTTTCACAATGCAAC------------------------TAATATTTTTGATGCCTCAGGTTCTACGATGATTCTAGTTCTACGAAGGCCTCATTGTTGGgcgttttctacttttttaagcAATGAAAAGGTA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACGGTCTGGTAGCTATGtatacttttt-caaaataaatgcatCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTCTGGAAGCATGGAGTAATTAAGGAGCAATCTATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACGATGTTTGTAGGCAATTCGATCTATACCAATAATTCACTTTCTTCCCTACAGCAAGACTCATTTTGTTCCTAAGTCATTGGAGGCATTATTAGAGATTTATCTGGTggcttttt-----------------------aaaagcacattatTTACTACAGTGTGTGTGGAGCCACCATTTATATTCATTGATCGTAATAAGTATGGCATTAGACCAGAATTTGGATTCAGGTTTTTAAACTCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCTTTAGTAttgttaaaactgaaa-aactatATAGCAAATTTGACTCTATATGCAATGATCTATCAATCGAAGAGTAAAAATGGAAACCAGTTACTCT-GGCTGGTCACAATCTTGTATTAAA-----------A i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9861979 1042 - 75148670 GGAGAGTCCAGTTTGGGGTGTCAGAGGGTCAGGAGG-AACAGCTCCACCGTGAGGAACCCCATTTAACCTGATTTAGAAAAGGGAAGGCAGAGAAGCATCAGCATTGAAACA-GGATTCCCTGGTGACCACAACGGTTGCAAACACT--ACACCTTTTTGTGGTTTAGGGTTTTATTCCTGTAATATGTTTCTTAGCCTTATAAATCCGGGGCTTTATACCTTCCTGGGGACTTCCTAGGTGTC-AGTGGAGATGCGGTTTATTAATTGTATTCTTTTTAAAGAATGAGTTGCTCCTA-TTTGGCTTTCACAATGCAAC------------------------TAATATTTTTGATGCCTCAGGTTCTACGATGATTCTAGTTCTACGAAGGCCTCATTGTTGGGAGTTTTCTACTTTTTTAAGCAATGAAAAGGTA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACATATGTTGAGGGATATTAAATAATTGCTGCCCAGAGTAAAATATAACAGGTTTTTATGGCCAACCCTTATGTTGACAGAG--------TGGACGGTCTGGTAGCTATGTATACTTTTT-CAAAATAAATGCGTCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTCTGGAAGCATGGAGTAATTAAGGAGCAATCTATTGGTTCCAAGGAACTGACA--TTAATGTTGACACACAATGTTTGTAGGCAATTCGATCTATACCAATAATTCACTTTCTTCCCTACAGCAAGACTCATTTTGTTCCTAAGTCATTGGAGGCATTATTAGAGATTTATCTGGTGGCTTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTGGAGCCACCATTTATATTCATTGATCGTAATAAGTATGGCATTAGACCAGAATTTGGATTCAGGTTTTTAAAATCTAATTTAGATTCTTTCCCTTGA----------TTACACTGACATAGGGCCTTAGTATTGTTAAAACTGAAA-AACTATACAGCAAATTTGATTCTATGTGCAATGATCT---AATCGAAGAGTAAAAATGGAAACCAGTTACTCT-GGCTGGTCACAATCTTGTATTAAA-----------A i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112707941 1001 + 159171411 -------------CAGGATGTCAGAGGGTCAGGAGA-AACAGCTCTGCTGTGAGGAGCCCCGTTTAACCTGATTTAGAAAAGGGAAGGCACAGAAGCATCAGCATTGAAACACAGATTCCCTAGTGACCACAGCCGTTGTAGACAGT--ACGCCTCTTTGTGGTTT-GGGTTTTATTCCTGTAATATGTTTCCTAGCCTTATAAATCCAGGGCTCTACACCTTTCTGGGGACTTACTAGGTGTC-AATGGAGATGCGGTTTATTAATTTTATTCTTTTTTAAGAATGAGTTGCTCCTA-TTCGGCCTTCACCATGCAAC------------------------TTTTATTTTTGAAGCCTCAG-----------------GTTCTACGAAGGCCTC---------------------CTTTAAGCAATGAAAAGATA-GAAAAGCCTGGAGCAATTTCTTATGTGTTTGACACATATGTTGAGGGATATTCAATAATTGCTGTCTAGGGCAAAATACAGCAGGTTTTTATGGCCAAGTCTCACATTGACAGAGTGTTGTAATGGACAGGCTGGTAG-TACGTACACTTTTC-CAAAATAAATGCGTCTCTGTGAAATGAGTTGTCGGGAGGACTACAGGTTCTGGAGGCGTGGAGTCATTAAGGAGCAATATGTTGGTACCAAGGAACTGACA--GTAATGTTGACACAGGATGTTTCTAGGCAATTTGAACTATACTGATCATTCATTTTCTTCCCTATGACAGGACTCATTTTGCTCCTAAGTCATTGGAGGCTTTATTAGAGATTTACCTGGTGGATTTTT-----------------------AAAAGCACATTATTTACTACAGTGTGTGTTGAGCCACTATTTATATTTATTGAGTGTAGTAAGTATGGCATTCAATCAGAATACGGATTTCGGGTTTTAATACCTAATTTAGATGGTTTCCCTTGA----------TTACACTGACATAGTGCCTTAGCATTGTTAAAACAGAAA-AACTACACAGCAAATTTGACCATAGATGCAATGATCAATCAATTGAAGAGTAAAAATGGAAACCAGTTATTCT-GGCTGGTCACAATCTTGTTTTAAA-----------A i calJac3.chr5 C 0 C 0 s mm10.chr11 99450479 1032 + 122082543 GGGTGATCCAGTTTGGG-CATCAGAGGGATTGAAGG-AAGAACCCTACTAGGTGGGACCTCACTTAGTGTGATTCAGAAGAGCGAAGGTA-AGGGGCA--AATAGGAAAGCA-AGCTTTTGTATTATCAAGAAC------------------CCTTCCTGTGCTTCA---TCTTATTCCTCT--CATGTTTCCTACCCTTG-AAACCTGGTGCTTTATACCTCCCTAGGGAC-CACTATACACCAAATGGAGACCTGTTTTGTTA----TTTTTTTTTCCAACAACGAGTTGTTTCTA-TTCAACTGCCACAATGTAACTAATACCAACCGACACAATGTAAGTAATATTTCTGATGCTTCGG-----------------TTTCCACGAAGA---CATTGCTTGTTGTTCACTAGGATTCTGAGCAATGTAAAGGAA-GGAAAACCCAGAACAATTTCTTTTGTGTTTGACACAGTTACTGTGGGATATCAAATAATTGCTGCCTTGGAAGAAACAGAAGAGGGTTTTATGGCTGAATCTTAGGTTGATGGAG--------C-TACAGGATGCTAGCAGGGTATACTTTTTCCAAAACAAATACGTCTCTGTGAAATGAGCTGTCAGAAAAACTCCAGATGTGGGAAGGCTGGAGTTATTAAAGAGTAA--TATTGGTTCAGAAGTGTTGACACTTTAATGGTGACACAC-ATGCTTCTGGACAATTTGACCAAAACCCATCGCTTGTTTTCTTTCCTGCTGCAGGGTTTGTTTTGTTCCCAGAGCACGTGAAATTTTACTAGAGATTTACCTGATGGGtttttttttttttttttttttttttttACAAAGTTCAGTACAGACTGCAGTGTGTGCT-------TATTTATGTTTTTGGAACATAATAAGTATGACCCTTTATCAGAATTCAGGTTTTAGAGCTCAAACCCCAATCC--CCTTTCTCCCCTAA----------TTAGGCTGATACAGTGTTTAAGAAATGTCAGAATTGAAA--ATTCTACAGCAAATCTGACCCAAGAACCAATGCTCAATGAACTGAAAAGTAGCTCTGGAAGGCACTTGTTCTGGGCTTGCCATATTCTTATGTTGAA-----------A i mm10.chr11 I 86 T 375 s canFam3.chr9 39274816 1025 - 61074082 AGCTAATCTTGCTTGGG-TGTCAGAGGGTCAAGAGGAAACAACACCATTGTGAGGAGCCCCATTTAACCTGATTTAGACAAGTGAAGGGAGAGAACCACCATCGTTGCAACA-AGAGTCACTAGCGACAGTAACTAGTGCACATAGTTAAAGGTTTTTTACAGTTTTGCGTTTTGTTCCTGTGTTGTG-TTCCTAGCTTTGT-AATCAGGGGGTTTATACCTTTCTGGGGACTTACTAAGTGTC-AGTGCAGACCTGGTTTATTCATA----TTTTTTTCAAGAGCAAGTTGCTATTA-TTCAGCTCTCAC-ACGCTGC------------------------TAATATTTTTAATGCCTCGT-----------------GTTCCACAAAGGCCTCCTTGTTTGGTGTTTTCTACT-TTTTAAGCAACTAAAAGCCAGGAAAAGCTTGGAGCAATCTCTTATGTGTTTGACACATATGTTGAGGGATACTTAATAATTGCTGCCCAGAGCAAAATATAACAGGATTTTATGGCCAAGTCTTATGTTGATAGAG--------TGGACAGGCTGGTAGCTACACACACTTTTT-CAAAATAAATGCATCTCTGTGAAATGAGCTGTCAGGAGGACTACAGGTTTTGGAAGCCTGGAGTAATTAAGGAGCAATATATTGGTTCTGAGAAACTGACA--TTAATGTTGACACATGAGGTTTCTGGACAATTTGATCTGTAGCAATAATTCATTGTGTTCTCTACTGCAGGACTCATTTTGTTCCTAAGTCATTTGAGGCTTTATTAAAGATTTACCTGGTGGCTTTTT-----------------------AAAAGCACGGTATTCACTGTGGTGAGTGTTCAGTCACTAGCTATGTTTATTGAACATAATAAGTATGACATTCAGCCAGA------GGTCAGGTTTTTAATCTCTAATTC--ATCCTCTGCCCTAGCATCTCAGATTCACACCAATGTAGGGCCTTAGCATTGTCAAAATGGAAATACCCAGACGGCAAAATTGGCCCTGGAAGCAGTGATCAATTAGTCATAGATTAAA-ATGGGAACCAATTATTCT-GGCCTGCCATGCTCTCATGATAGA-----------G i canFam3.chr9 C 0 C 0 a score=49983.000000 s hg38.chr17_JH159146v1_alt 46855 17 + 278131 TGACTGATCTGggcctg s panTro4.chr17 66166704 17 - 82630442 TGACTGATCTGggcctg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24695554 17 - 73212453 TGACTGCTTTGggcttg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47915562 17 - 81552678 TGACTGATTTGggcctg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53028648 17 + 80904711 TGACTGCTTTGGGCCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52551530 17 + 80997621 TGACTGCTTTGggcctg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47596624 17 + 74645514 TGACTGCTttgggcctg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9863021 17 - 75148670 TGACGGCTTTGggcctg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112708942 17 + 159171411 TGACTGCTTTGggccag i calJac3.chr5 C 0 C 0 s canFam3.chr9 39275841 17 - 61074082 CCACTATCCTTAATCTG i canFam3.chr9 C 0 I 133 e mm10.chr11 99451511 375 + 122082543 T a score=9428.000000 s hg38.chr17_JH159146v1_alt 46872 3 + 278131 gca s panTro4.chr17 66166721 3 - 82630442 gca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24695571 3 - 73212453 gca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47915579 3 - 81552678 gca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53028665 3 + 80904711 GCA i rheMac3.chr16 C 0 M 288 s macFas5.chr16 52551547 3 + 80997621 gca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47596641 3 + 74645514 gca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9863038 3 - 75148670 gca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112708959 3 + 159171411 gta i calJac3.chr5 C 0 C 0 e canFam3.chr9 39275858 133 - 61074082 I e mm10.chr11 99451511 375 + 122082543 T a score=217943.000000 s hg38.chr17_JH159146v1_alt 46875 102 + 278131 cagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtgaatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaacccg s panTro4.chr17 66166724 102 - 82630442 cagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtgaatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaacccg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24695574 102 - 73212453 cggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtgaatcacctgaggtcaggagttcaagaccagcctggctaacatggcgaaatcct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47915582 102 - 81552678 cggtggctcatgcctgtaatcccagcactttgggaggccgagatgggtgaatcacctgaggtcaggagttcaagaccagcctggccaacatggcaaaaccca i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52551550 101 + 80997621 cggtggctcacgccta-aatcccagcactttgggaggccgaggcaggtgaatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaagccct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47596644 101 + 74645514 cggtggctcacgccta-aatcccagcactttgggaggccgaggcaggcgaatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaagccct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9863041 101 - 75148670 cagtggctcacgccta-aatcccagcactttgggaggccgaggcaggtgaatcacttgaggtcaggagttcaagaccagcctggccaacatggcgaagccct i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112708962 86 + 159171411 cgatgtctcaaacctgtaatcccagcacactggggggacga----------------gaggtcaggagttcaagaccagcctggccaacatggtgaaactcc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39275858 133 - 61074082 I e mm10.chr11 99451511 375 + 122082543 T e rheMac3.chr16 53028668 288 + 80904711 M a score=165312.000000 s hg38.chr17_JH159146v1_alt 46977 66 + 278131 gtctctactaaaaatac-aaaaattatctcggtgtgatggtgggcatctgtaaccccagctactcag s panTro4.chr17 66166826 66 - 82630442 gtctctactaaaaatac-aaaaattatctcggtgtgatggcgggcatctgtaaccccagctactcag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24695676 66 - 73212453 gtctctaataaaaatac-aaaaattatctcggcgtgatggcgggcatctgtaatcccagctactcag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47915684 66 - 81552678 gtatctactaaaaatac-aaaaattatctcggcatgatggcgggcgtctgtaatcccagctactcag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53028959 65 + 80904711 gtctctactaaaaatac-aaaaattagctgggtgtggtggcgcatgcctgtaat-ccagttactcag i rheMac3.chr16 M 288 C 0 s macFas5.chr16 52551651 65 + 80997621 gtctctactaaaaatac-aaaaattagctgggtgtggtggcgcatgcctgtaat-ccagttactcag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47596745 65 + 74645514 gtctctactaaaaatac-aaaaattagctgggtgtggtggcgcatgcctgtaat-ccagttactcag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9863142 65 - 75148670 gtctctactaaaaatac-aaaaattagctgggtgtggtggcgcatgcctgtaat-ccagttactcag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112709048 67 + 159171411 atctttactgaaaatacaaaaaattagccaggcatgatggcaggtgcctgaaatcccagctactcag i calJac3.chr5 C 0 C 0 e canFam3.chr9 39275858 133 - 61074082 I e mm10.chr11 99451511 375 + 122082543 T a score=2499947.000000 s hg38.chr17_JH159146v1_alt 47043 848 + 278131 gaggctgaggcaggagaatcgcttgaact----tgggaggcagaggttgcagtgagccaagattgcgccagtgcactccagcctgggcaagaagagcgaaattctgtctcaaaaaaaaaa-----------------------------gaaaaaaGACTGA-GGTTTGTTATAATGATTATGATCATTTTGTCTTTGCCTTTTTATTTCTTAGTATCCCAGAAA--TTATCCAACCAACATTTTTGATGTGGAAATGTGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGGTCGTAT--TTTTT-CAGTTTTATCAACATGGACTTAGTAAGTAGCAtaacgtcatcagactgatctggttcaacttttatgttacagagttgtgagttgttgtgagttgtttttcagttccatggaccccc----------------------tgagcatgcccagatgaaccaagtgtgcaggaacctaagtgcttggactaaggagtggggactgaattaagaagcggacaccccatggcagggtccagtcagatca-tgcctcccagcatcacctcattgcaggatcagatcatcctcattaccctatggttatgaaacctgacct--------agcctcaagctca---gggagacagatttgagcatttccttcagtttccttgtcagtctactcacaataaacctttctcactgccaaaacccagtgctttggtgcttgacttaactttgcctgagggcaaacggacctGGTTTGGTTTGGTGACAGTAGTTTGTGTGTTATTTTAAAGCATTGGTGTTTTAAAATTGTACTGAGATATTAATATACAGAGGTAATAATCCCCAAAGTAAAACTATCATCATAAAACC---TTTTTGGGATGGAATAGCTC----tttt s panTro4.chr17 66166892 873 - 82630442 gaggctgaggcaggagaatcgcttgaact----tgggaggcagaggttgcagtgagccaagattgcgccagtgcactccagcctggacaagaagagcgaaattctgtctcaaaaaaaaaa------------------------aaa--gaaaaaaGACTGA-GCTTTGTTATAATGATTATGATCATTTTGTCTTTGCCTTTTTATTTCTTAGTATCCCAGAAA--TTATCCAACCAACATTTTTGATGTGGAAATGTGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGGTCGTAT--TTTTT-CAGTTTTATCAACATGGACTTAGTAAGTAGCAtaacgtcatcagactgatctggttcaacttttatgttacagagttgtgagttgttgtgagttgtttttcagttccatggacccccccaggttgaaggtcacataacctgagcatgcccagatgaaccaagtgtgcaggaacctaagtgcttggactaaggagtggggactgaattaagaagcggacaccccatggcagggtccagtcagatca-tgcctcccagcatcacctcattgcaggatcagatcatcctcattaccctatggttataaaacccgacct--------agcctcaagctca---gggagacagatttgagcatttccttcagtttccttgtcagtctactcacaataaacctttctcactgccaaaccccagtgctttggtgcttgacttaactttgcctgagggcaaacggacctagtttggttTGGTGACAGTAGTTTGTGTGTTATTTTAAAGCTTTGGTGTTTTAAAATTGTTCTGAGATATTAATATACAGAGGTAATAATCCCCAAAGTAAAACTATCATCATAAAACC---TTTTTGGGATGGAATAGCTC----tttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24695742 897 - 73212453 gaggctgaggcaggagaatcgcttgaact----tgggaggcagaggttgcagtgagccaagattgcgccagtgcactcccgtctgggcaagaagagtgaaattctgtctcaaaaaaaaaaaaaaaaaaaggaaaaaaaaaaaaaaaa--gaaaaaaGACTGA-GCTTTGTTATAATGATTATTATCATTTTGTCTTTGCCTTTTTGTTTCTTAGTATCCTAGAAA--TTATCCAACCAACATTTTTGATGTGGAAATGTGAATGAAATCTCTTTTGGTGAAACTACAAGAAAGATTTTACAGATTATAT--TTTTTACAGTTTTATCAACATGGACTTAGTAAGTAGCAtaacgtcatcagactgatctggttcaacttgtatgttacagagttgtgagttgttgtgagttgtttttcagttccatggatgccc-caggttgaaggtaacataacctgagcatgcccagaggaatcaagtgtgcaggaacctaagtgcttggactaaggagtggggactgaattaagaagcagacacaacatggcagggtccagtcagatca-tgcctcccagcatcacctcattgcaagatcagatcatcctcattaccctatggttacaaaacccgacct--------agcctcaagctca---gggagacagatttgagcatttccttcagtttccttgtcagtctactcacaataaacctttcttgctgccaaaacccagtgctttggtgcttgacttaactttgcctgagggcaaacagacctagtttggtttggtgacaGTAGTTTGTGTGTTATTTTAAAGCTTTGGTGTTTTAAAATTGTACTGAGATATTAATATACAGAGGTAATAATCCCCAAAGTAAAACTGTCATCATAAAACC---TTTTTGGGATGGAACAGCTC----tttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47915750 887 - 81552678 gaggctgaggcaggagaatcacttgaact----tgggaggcagaggttgcagtgagccaagattgcgccagtgcactccagcctgggcaagaagagcgaaattctgtctcaaaaaaaaaa----------acaaaaaaaacaagtaa--agaaaAAGACTGA-GCTTTGTTATAATGATTATGATCATTTTGTCTTTGCCTTTTTGTTTCTCAGTATCCCAGAAA--TTATCCAACCAACATTTTTGATGTGAAAATATGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGATTATAT--TTTTTACAGTTTTATCAACATGGACTTAGTAAGTAGCATAATGTcatcagactgatctggttcagcttttatgttacagagttgtgagttgttgtgagttgtttttcagttccatggactccc-caggttgaaggtcacataacctgagcacgcccagatgaaccaagtgtgcaggaagctaagtgcttggactaaggagtggggactgaattaagaagcggacaccccatggcagggtccagtcagacca-tgcctcccagcatcacctcattgcaagatcagatcatcctcattaccctatggttataaaacctgacct--------agcctcaagctca---gggagacagatttgagcatttccttcagtttccttgtcagtctactcacaataaacctttatcgcttccaaaacccagtgctttggtgcttgactttcctttgcctgagggcaaatggacctagtttggttTGGGGACAGTAGTTTGTGTGTTATTTTAAAGCTTTGGTGTTTTAAAATTGTACTGAGATATTAATATACAGAGGTAATAATCCCCAAAGTAAAACTGTCATCATAAAACC---TTTTTGGGATGGAACAGCTC----tttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53029024 892 + 80904711 gaggctgaggcaggagaattgcttgaact----tgggaggcagaggttgcagtgagccaagattgtgccaggtcactccagcctggac---aagagcgaaattctgtctcaagaaaaaac-------aaaaacaaacaaacaaaaaaCCCAAAAGAAACTGA-GCTTTGTTACAATGATTATGATCATTTTGTCTTTGTCATTTTGTTTCTTAGTATCCCAGAAATTTTATCCAGCCGACATTTTTGATGCGGAAATGTGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGATTATGT--TTTTTACAGTTTTACTGACACGGACTTAGTAAGTAGCAtaacgtcatcagacttatcagattcaacttttatgtcacagagttgtgagttgttgtgagttgtttttcagtt-catggaccccc-caggttgaaggtcacacaacctgagcatgcccaggtgaaccaagcgtgtaggaacctaagtgcttggactaaggagtggggactgaattaagaagcgaacaccccatggtagggtccagtcagatca-cgcctcccagcatcacctcattgcaag-tcagatcatcctcattaccctatggttataaaacctgacct--------agcctcaaggtca---gggagacagatttgagcgtttccttcagtttccttgtcagtctactcacaataaacctttctcgctgccaaaacccagtgctttggtgcttgacgttcccttgcctgagggcaaacggacctagtttggtTTGGCGACAGTAGTTTGTGTGTTATTTTAGAACTTGGGTGTTTTAAAATTGTACTGAGATATTCATACACAGAGGTAATAATCCCTAAAGTAAAACTGTCATCATGAAAAC---TTTTTGGGATGGAACAGCTC-ttttttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52551716 891 + 80997621 gaggctgaggcaggagaattgcttgaact----tgggaggcagaggttgcagtgagccaagattgtgccaggtcactccagcctggac---aagagcgaaattctgtctcaagaaaaaac-------aaaaacaaacaaacaaaaaaCCCAAAAGAAACTGA-GCTTTGTTATAATGATTATGATCATTTTGTCTTTGTCATTTTGTTTCTTAGTATCCCAGAAATTTTATCCAACTGACATTTTTGATGCGGAAATGTGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGATTATGT--TTTTTACAGTTTTACTGACACGGACTTAGTAAGTAGCAtaacgtcatcagacttatcagattcaacttttatgtcacagagttgtgagttgttgtgagttgtttttcagtt-catggaccccc-caggttgaaggtcacacaacctgagcatgcccaggtgaaccaagcgtgtaggaacctaagtgcttggactaaggagtggggactgaattaagaagcaaacaccccatggcagggtccagtcagatca-cgcctcccagcatcacctcattgcaag-tcagatcatcctcattaccctatggttataaaacctgacct--------agcctcaaggtca---gggagacagatttgagcgtttccttcagtttccttgtcagtctactcacaataaacctttctcgctgccaaaacccagtgctttggtgcttgacgttcccttgcctgagggcaaacggacctagtttggttTGGCGACAGTAGTTTGTGTGTTATTTTAGAACGTGGGTGTTTTAAAATTGTACTGAGATATTCATACACAGAGGTAATAATCCCTAAAGTAAAACTGTCATCATGAAAAC---TTTTTGGGATGGAACAGCTC--tttttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47596810 893 + 74645514 gaggctgaggcaggagaattgcttgaact----tgggaggcagaggttgcagtgagccaagattgtgccaggtcactccagcctggac---aagagcgaaattctgtctcaagaaaaaac-------aaaaacaaacaaacaaaaaacccaaaagaaactGA-GCTTTGTTATAATGATTATGATCATTTTGTCTTTGTCATTTTGTTTCTTAGTATCCCAGAAATTTTATCCAACCGACATTTTTGATGCGGAAATGTGAATGAAATCTCTTTCGGTAGAACTACAAGAAAGATTTTAAAGATTATGT--TTTTTACTGTTTTACTGACACGGACTTAGTAAGTAGCATAACGTCATCAGACTTATCTGATTCAACTTTTATGTCACAGAGTTGTGAGTTgttgtgagttgtttttcagtt-caTGGACCCCC-CAGGTTGAAGGTCACACAACCTGAGCATGCCAAGGTGAACCAAGCGTGTAGGAACCTAAGTGCTTGGACTAAGGAGTGGGGACTGAATTAAGAAGCGAACACCCCATGGCAGGGTCCAGTCAGATCA-CGCCTCCCAGCATCACCTCATTGCAAG-TCAGATCATCCTCATTACCCTATGGTTATAAAACCTGACCT--------AGCCTCAAGgtca---gggagacagatttgagcgTTTCCTTCAGTTTCCTTGTCAGTCTACTCACAATAAACCTTTCTCGCTGCCAAAACCCAGTGCTTTGGTGCTTGACGTTCCCTTGCCTGAGGGCAAACGGACCTAGTTTGGTTTGGCGACAGTAGtttgtgtgttattttaaaacttgggtgttttaaaattgtactgAGATATTCATACACAGAGGTAATAATCCCTAAAGTAAAACTGTCCTCATGAAAAC---TTTTTGGGATGgaacagctctttttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9863207 889 - 75148670 gaggctgaggcaggagaattgcttgaact----tgggaggcagaggttgcagtgagccaagattgtgccaggtcactccagcctggac---aagagcgaaattctgtctcaagaaaaaac-------aaaaacaaacaaacaaaaaaCCCAAAAGAAACTGA-GCTTTGTTATAACGATTATGATCATTTTGTCTTTGTCATTTTGTTTCTTAGTATCCCAGAAATTTTATCCAACCGACATTTTTGATGCGGAAATGTGAATGAAATCTCTTTTGGTAGAACTACAAGAAAGATTTTAAAGATTATGT--TTTTTACAGTTTTATTGACGTGGACTTAGTAAGTAGCAtaacgtcatcagacttatctgattcaacttttatgtcacagaattgtgagttgttgtgagttgtttttcagtt-catggaccccc-caggttgaaggtcacacaacctgagcatgcccaggtgaaccaagcgtgtaggaacctaagtgcttggactaaggagtggggactgaattaagaagcgaacaccccatggcaaggtccagtcagatca-cgcctcccagcatcacctcattgcaag-tcagatcatcctcattaccctatggttataaaacctgacct--------agcctcaaggtca---gggagacagatttgagcgtttccttcagtttccttgtcagtctactcacaataaacctttctcgctgccaaaacccagtgctttggtgcttgacgttcccttgcctgagggcaaacggacctagtttggttTGGCGACAGTAGTTTGTGTGTTATTTTAAAACTTGGGTGTTTTAAAATTGTACTGAGATATACATACACAGAGGTAATAATCCCTAAAGTAAAACTATCATCATGAAAAC---TTTTTGGGATGGAACAGCTC----tttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112709115 842 + 159171411 gaggctgaggcaggagaatcacttgaactcctgccggaggtggaggtcgaagtgagccaagattgtaccactgca--ccagcatgggcaaaaagagtaaaattctgtctcaaaaaaaaaa-------a---------------------aaaaaaaGACTACTGCTTTCTTATAATGATTATGATCATTTTG--------------GTTCTTAGTATTCCAGAAATTTTATCCAACCAACACTTTTGATGTAGAAATATGAATGTAATCTCTTTCAGTAGAACTACAAGATAGGGATTAAGGATTATGT--TTTTTACAGTTTTATCAACATGGACTT----AGTAGCATAACGTAatcagactgatctggttcgactttcatgtaacaga----------gttgtgagttgtttttcagttccatggaccctc-caggttggacgtcacataacctgagcatgcccagatgaaccaagcatgcaggaacctaagtgcttggaccaaggagtggggactgaattaagaagtggacaccccatggcaggatccagtcagatca-tgccttccagcatcacctcattgcaagattagatcatcctcattaccctatggttataaaacctaacct--------agcctcaagctca---gggagacagattggagcatttcc-actgtctccttgtcagtctactcacaataaacctttctcgctgccaaaacccagtgctttggtccttgactttcc-------aAAGTCAAATGGACCTAGTTTGGTTTGGTGACAGTAGTTTGTGTGTTATTTTAAAGTGTTGGTGTTTTAAAATTGTACCGAGATATTGATATACAGAGGTAATG---CCCAAAGTAAAACTGTCATCATAAAACCT--TTTTTGGGGTGCAACAGCTCtttttttt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39275991 591 - 61074082 gagagagaggcagagacacaggcag--------agggagaagcaggctcca-tgcgccaggagcccgacgtgggacttgatcccgggtctccaggatcacgccctgggccaaaggcaggc-----------------------------gccaaaccgctgc-gcc--------------------------------------------------acccaggga--tcccTTATCCCACATTCTTAACGTGGATACTTGGATGAAA--TCTTTTGGTAGAACTATAAGAAAT-CTTTAGGGACTTTGTCCTTTCTACAGTTCTGTCAAAATAGATTCAGCAGGTAGT------------------------------------------------------TTGCATATTATTTCATAGCT--TTGGAATTTT-AAAA-----------------------------------------------------------TTGTACTAA-GAggggggcctggct------------------------ggctcagttggttaagcgcc------catctcttggtttcagt-tcagg------tcatgatctcaggctcatgaga-ctgacctctgtgtcaggctccacgctcaccctggagtctgcttgagactctttcttccttttcttttcc---ctccgcat----------------------------gtgctct----ctctatctccctc-------agataaataaat-----------------aaataaatcg-------------------------ttaaaaTTATACTAAGGTATTTATATACACAGGCAATAATCCCCAAGGTAAAATTATCATCATAAAATCTGCTTTTTGGGGTGAGCTAGCTC----TTTT i canFam3.chr9 I 133 C 0 e mm10.chr11 99451511 375 + 122082543 T a score=501282.000000 s hg38.chr17_JH159146v1_alt 47891 174 + 278131 ttttt-gagacagaatctcgcttttgttgcccaggctggagtgcagcggtgtgatctcggctcactacagcctccacctcccaagttcaagtgattcttttgcctcagcctcccgagtagctggaatcacaggtgcgc-accaccatgccctgttaaattttgtatttttagtaga s panTro4.chr17 66167765 174 - 82630442 ttttttgagacagaatctcgcttttgttgcccaggctggagtgcagcggtgtgatctcggctcactacagcctccacctcccaagttcaagtgattcttttgcctcagcctcccaagtagctggaatcacaggtgcgc-accaccatgccctgttaaattttgt-tttttagtaga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24696639 174 - 73212453 ttttt-gagatagaatctcgctcttgttgcccaggctggagtgcagcggtgtgatctcggctcactacaacctccacctcccaagttcaagtgattctcgtgcctcagcctcccaagtagttggaatcacaggtgcgc-accaccatgccctgttaaattttgtatttttagtaga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47916637 175 - 81552678 ttttttgagacagaatctcgctcttgttgcccaggctggagtgcagtggtgtgatctcggctcactacaacctccatctcccaagttcaagtgattctcgtgcctcagcctccggagtagctggaatcacaggtgcgc-accaccatgccctgttaaattttgtatttttagtaga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53029916 176 + 80904711 ttttttgagacagaatctcgtacttgttgcccaggctggagggcagtggtgtgatctaggctcactacaacctccacctcccaagttcaagcgattctcgtgcctcagcctcccaagtagctggaatcaccggtgtgcaaccatcatgccctgttaatttttgtatttttagtaga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52552607 175 + 80997621 ttttttgagacagaatctcgtacttgttgcccagggtcgagggcagtggtgtgatctaggctcactacaacctccacctcccaagttcaagcgattctcgtgcctcagcctcccgagtagctggaatcacaggtgtgc-accatcatgccctgttaatttttgtatttttagtaga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47597703 175 + 74645514 ttttttgagacagaatctcgtacttgttgcccagggtggagggcagtggtgtgatctaggctcactacaacctccaccttccaagttcaagcgattctcgtgcctcagcctcccgagtagctggaatcacaggtgtgc-accatcatgccctgttaatttttgtatttttagtaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9864096 175 - 75148670 ttttttgagacagaatctcgtacttgttgcccagggtggagggcagtggtgtgatctaggctcactacaacctccacctcccaagttcaagcgattctcgtgcctcagcctcccgagtagctggaatcacaggtgtga-gccatcatgccctgttaatttttgtatttttagtaga i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112709957 174 + 159171411 ttttttgagacagattcttgctc-tgtcgtctaggctgaagtgcaacagcatgatcttggctcactgcaatctttgcctcccaggttcaaatgattctcatgccttagcctcctgagtagctggaatcgcaggtgcgc-accaccatgccctgctaatttttgtatttttagtgga i calJac3.chr5 C 0 C 0 e canFam3.chr9 39276582 0 - 61074082 C e mm10.chr11 99451511 375 + 122082543 T a score=21754.000000 s hg38.chr17_JH159146v1_alt 48065 7 + 278131 gatgggg s panTro4.chr17 66167939 7 - 82630442 gatgggg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24696813 7 - 73212453 gatgggg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47916812 7 - 81552678 gatgagg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53030092 7 + 80904711 gacaggg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52552782 7 + 80997621 gacaggg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47597878 7 + 74645514 gacgggg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9864271 7 - 75148670 gacaggg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112710131 7 + 159171411 gatgggg i calJac3.chr5 C 0 C 0 s canFam3.chr9 39276582 7 - 61074082 GATGAAG i canFam3.chr9 C 0 C 0 e mm10.chr11 99451511 375 + 122082543 T a score=386368.000000 s hg38.chr17_JH159146v1_alt 48072 125 + 278131 tttcactatattggccaggctggtcttgaa---ctaacctcaagtgatccacctgccttggcctcccaaagtgct-gaattgcaggtgtgagccaccgcacccagccTGGAACAGCTCTTTTAATGAGA s panTro4.chr17 66167946 125 - 82630442 tttcactatattggccaggctggtcttgaa---ctaacctcaagtgatccacctgccttggcctcccaaagtact-gaattgcaggtgtgagccaccacacccagccTGGAACAGCTCTTTTAATGAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24696820 129 - 73212453 tttcaccatattggccaggctggtcttgaactcctaacctcaagtgatccacctgccttggcctcccaaagtgctggaattacaggtgtgagccaccgcacccagccTGGAACAGCTCTTTTAATGAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47916819 129 - 81552678 tttgactatattggccaggatggtcttgaactcctaacctcaagtgattcacctgccttggcctcccaaagtgctggaattacaggcgtgagccactgcacccagccTGGAACAGCTCTTTTAATGAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53030099 129 + 80904711 tttcaccatattggccaggctggtcttgaactcctgacttcaagtgatctgccagccttggcctcccaaagtgctggaattacaggcgtgagccactgcacccagccTGGAACAGCTCTTTTAATGAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52552789 129 + 80997621 tttcaccatattggccaggctggtcttgaactcctaacttcaagtgatctgccagccttggcctcccaaagtgctggaattacaggcgtgagccactgcacccagccTGGAACAGCTCTTTTAATGAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47597885 129 + 74645514 tttcaccatattggccaggctggtcttgaactcctaacttcaagtgatccgccggccttggcctcccaaagtgctggaattacaggcgtgagccactgcacccagcctggaacagctcttttaatgaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9864278 129 - 75148670 tttcaccatattggccaggctggtcttgaactcctaacttcaagtgatccgccagccttggcctcccaaagtgctggaattacaggcgtgagccactgcacccagccTGGAACAGCTCTTTTAATGAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112710138 128 + 159171411 tttcactatattagccaggctggtcttgaactcctaacctcaagtgatccacctgccctggcctcccaaactgctagaattacaggagtgagccaccacacccagccTGGAACAGCTCTTTTAATGAG- i calJac3.chr5 C 0 C 0 e canFam3.chr9 39276589 0 - 61074082 C e mm10.chr11 99451511 375 + 122082543 T a score=706831.000000 s hg38.chr17_JH159146v1_alt 48197 218 + 278131 AAAGAATAAAGTCAATTTGaaaaaaaaaaaaaaaaaa--GGCTTCAAACCCGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTCATTGGTAATTTATTTTGGATTATTCTTCTGTATTTCTCCTTGTAAGTGTATTTGCCCAGTGTGTTACTCTGACATGCCCCATGTTAGTAGCTGA s panTro4.chr17 66168071 220 - 82630442 AAAGAATAAAGTCAATTAGaaaaaaaaaaaaaaaaaaaaGGCTTCAAACCTGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTCATTGGTAATTTATTTTGGATTATTCTTCTGTATTTCTCCTTGTAAGTGTATTTGCCCAGTGTGTTACTCTGACATGCCCCATGTTAGTAGCTGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24696949 216 - 73212453 AAAGAATAAAGTCAATTAGAAAAAAAAAAAAAAAA----GGCTTCAAACCTGAGCCTGATTCAAACATTTTAAGTCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTCATTGGTAACTTATTTTGAATTATTCTTCTGTTTTTCTCCTTGTAAGTGTATTTGCCCAATGTGTTACTCTGACATGCCCCATGTTAGTAACTGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47916948 218 - 81552678 AAAGAATAAAGTCAATTAGaaaaaaaaaaaaaaaaaa--GGCTTCAAACCTGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTCACTGGTAACTTATTTTGAATGATTCTTCTGTTTTTCTCCTTGTAAGTCTGTTTGCCCAATGTGTTATTCTGACATGCCCCATGTTAGTAACTGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53030228 212 + 80904711 AAAGAATAAAGTCAATTAG-----AAAAAAAAAAAA---GGCTTCAAACCTGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTTATTGGTAATTTATTTTGAATTATTCTTCTGTTTTTCTCCTCGTAAGTGTATTTCCTCAATGTCTTACTCTGACATGCCCCATGTTAGTAACTGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52552918 212 + 80997621 AAAGAATAAAGTCAATTAG-----AAAAAAAAAAAA---GGCTTCAAACCTGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTTATTGGTAATTTATTTTGAATTATTCTTCTGTTTTTCTCCTTGTAAGTGTATTTCCTCAATGTCTTACTCTGACATGCCCCATGTTAGTAACTGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47598014 217 + 74645514 aaagaataaagtcaattagaaaaaaaaaaaaaaaaa---ggcttcaaaCCTGAGCCtgattcaaacattttaaatctgTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTTAttggtaatttattttgaattattcttctgtttttctccttgtaAGTGTATTTCCCCAATGTGTTACTCTGACATGCCCCATGTTAGTAACTGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9864407 216 - 75148670 AAAGAATAAAGTCAACTAGaaaaaaaaaaaaaaaaa---GGCTTCAAACCTGAGCCTGATTCAAACATTTTAAATCTGTCTTTTAAAGACCATTCCAAAACTTATGCTTTTATCATAAAACAATTTATTGGTAATTTATTTTGAATTATTCTTCTGTTTTTCTCCTTGTAAGTGTATTTCCCCAATGTGTTACTCTGACACGCCCCATGTTGGTAACTG- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112710266 201 + 159171411 AAAGAATAAAGCCAATTAGA-------------------GCCTTTAAACCTGAGCCCAATTCAAAAATTTTAAATCTGACTTTTAAAGACCATTTCAAAACTTGTGCTTTTATCATAAAACAATTCATTGGTAATTTATTTTGAATTATTCTTCCATATTTCTCCTTATAAGTGTATTTGCCCAATGTGTTACTCTGACATGCCCTGTGTTAATAACTGA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39276589 200 - 61074082 AAAGAATAAAGTCATTT-----------AAAAAAAT---GACTGCAAATCTGAAACTGACTAAAAAATTTTAAATCTTTTTTTCAAAGATCATCCCAGAACTTATGCCTTCATCATATAACAATTAATT-GTAACTGA--TTGAGTTATTATTGCATTTTT-TCCTTATAAGCCTACTTTCTCAATG--TTGCTCTTCTATACCCCATATTAAAACTTGG i canFam3.chr9 C 0 T 1311 e mm10.chr11 99451511 375 + 122082543 T a score=42629.000000 s hg38.chr17_JH159146v1_alt 48415 14 + 278131 ACCGTTATTAACTA s panTro4.chr17 66168291 14 - 82630442 ACCGTTATTAACTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24697165 14 - 73212453 ACTGTTATTAACTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47917166 14 - 81552678 ACCGTTATTAACTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53030440 14 + 80904711 ACCGTTATTAACTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52553130 14 + 80997621 ACCGTTATTAACTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47598231 14 + 74645514 ACCGTTATTAACTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9864623 14 - 75148670 ACCGTTATTAACTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112710467 14 + 159171411 ACTGTTTTTAACTG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39276789 1311 - 61074082 T e mm10.chr11 99451511 375 + 122082543 T a score=201135.000000 s hg38.chr17_JH159146v1_alt 48429 52 + 278131 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGCAGGGCTCATTTTGTT s panTro4.chr17 66168305 52 - 82630442 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGCAGGGCTCATTTTGTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24697179 41 - 73212453 TTGATCTATATCAATAATTCGTTTTGTTCCCTACTGCAGGG----------- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47917180 52 - 81552678 TTGATCTATACCAATAATTCGTTTTGTTCTCTACTGCAGGGCTCATTTTGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53030454 52 + 80904711 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGTAGGACTCATTTTGTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52553144 52 + 80997621 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGTAGGACTCATTTTGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47598245 52 + 74645514 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGTAGGACTCATTTTGTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9864637 52 - 75148670 TTGATCTATACCAATAATTCGTTTTGTTCCCTACTGCAGAACTCATTTTGTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112710481 52 + 159171411 TTGATCTATACCAAGAATTCATTTTGTTTTCTACTGCAGGTCCAATTTCGTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99451136 52 + 122082543 TTGACCAAAACCCATCGCTTGTTTTCTTTCCTGCTGCAGGGTTTGTTTTGTT i mm10.chr11 T 375 C 0 s canFam3.chr9 39275478 52 - 61074082 TTGATCTGTAGCAATAATTCATTGTGTTCTCTACTGCAGGACTCATTTTGTT i canFam3.chr9 T 1311 I 1259 a score=142842.000000 s hg38.chr17_JH159146v1_alt 48481 46 + 278131 ACTACATCATGTGAGGCTTTCTTAGAGATGTACCCAGTGGCTTTTT s panTro4.chr17 66168357 46 - 82630442 ACTACATCATGTGAGGCTTTCTTAGAGATGTACCCAGTGGCTTTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24697220 45 - 73212453 -CTACATCATGTGAGGCTTTCTTAGAGATGCACCCAGTGGCTTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47917232 46 - 81552678 ACTACATCATGTGAGGCTTTCTTAGAGATGTACCCAGTGGCTTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53030506 46 + 80904711 TCTACATCATGTGAAGCTTTATTAAAGATGTACCTAGTGGTTTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52553196 46 + 80997621 TCTACATCATGTGAGGCTTTATTAAAGATGTACCTAGTGGTTTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47598297 46 + 74645514 TCTACATCATGTGAGGCTTTATTAAAGATGTACCTAGTggtttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9864689 46 - 75148670 TCTGCATCATGTGAGGCTTTATTAAAGATGTACCTAGTGGTTTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112710533 46 + 159171411 CCTACATGATTTGAGGCTTTATTAAAGACGTACCTGGTGGCTTTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99451188 46 + 122082543 CCCAGAGCACGTGAAATTTTACTAGAGATTTACCTGATGGGttttt i mm10.chr11 C 0 I 438 s canFam3.chr9 39276789 21 - 61074082 AATACAGCATAT---------------ATGTACACA---------- i canFam3.chr9 I 1259 C 0 a score=885238.000000 s hg38.chr17_JH159146v1_alt 48527 312 + 278131 AAAAGCACACATTTTACTACCATGTGCGTCTGGTTACAATTTATGtgtgtgtatgtatgtgtgggtatatattacctatatgcagtgtatgtatatatacacatatatatgtatatatGTGTTCACAACATTCTGATGTAAAGGATATGTCAGATTTC--------TATGTTCCTTGATTTAGAGAA--AAAAGGTTGATGACTTATTTTTTCCATTTTCTAATTTATTGGGAAATACGATATACATA-CATTT--AACAACAGACCAAAGGAAAAA-ATGAAAGAATGCCTCCATCCTGGTGTGCATATT--CATGTGCTATTCAAA s panTro4.chr17 66168403 312 - 82630442 AAAAGCACACATTTTACTACCATGTGCGTCTGGTTACGATTTATGTGTGTGTATGTATGTGTGGGtatatattacatatatgcagtgtatgtatatatacacatatatatgtatatatGTGTTCACAACATTCTGATGTAAAGGATATGTCAGATTTC--------TATGTTCCTTGATTTAGACAA--AAAAGGTTGATGACTTATTTTTTCCATTTTCTAATTTATTGGGAAATACGATATACATA-CATTT--AACAACAGACCAAAGGAAAAA-ATGAAAGAATGCCTCCATCCTGGTGTGCATATT--CATGTGCCATTCAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24697265 309 - 73212453 AAAAGCACACATTTTACTACCATGTGCGTCTAGTTATGATTTATGtatgtgtatgtatgtgtatatgtatattacatgtatgcagtgtatgtatatatacacatatatatgtatacgtGTGTTCACAACATTCTGATATAAAGGATATGTCAGATTTC--------TATGTTCCTTGATTTAGAGAA--AAAAGGT---TGACTTATTTTTTCCATTTTCTAATTTATTGGGAAATACGATATACATA-CATTT--AACAACAGACCAAGGGAAAAA-ATGAAAGAATGCCTCCAACTTGGTGTGCATATT--CACGTGCTATTCAAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47917278 312 - 81552678 AAAAGCACACATTTTACTACCATGTGCGTCTAGTTACGATTTATGTGtgtgtatgtatgtgtgggtatatattacatatatgcagcatatgtatatgtatacatatatatatatacatgtgtTCACAACATTCTGATGTAAAGGATATGTCAGATTTC--------TATGTTCCTTGATTTAGAGAA--AAAATGTTGATGACTTATTTTTTCCATTTTCTAATTTATTGGGAAATACGATATACATA-CATTT--GACAACAGACCAAGGGAAAAA-ATGAAAGAATGCCTCCATCTGGGTGTGCATATT--CATGTGCTATTCAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53030552 310 + 80904711 AAAAGCACAGTTTTTACTACCATGTGCGTCTAGTCACGATTTATGtatgtgtatgtatgtgtgggtatatattacatatatgtggtgagtgtatatat--acatatatatgtataCATGTGTTCACAACATTCTGATATAAAGGATATATCAGATTTA--------TATGTTCCTTGATTTAGAGAA--AAAAGGTTGATGACTTATTTTTTCTGTTTTCTAATTTATTGGGAAATACTATATATGTA-CATTT--AACAATAGACCAAGGGAAAAA-ATGAAAGAATGCCTTCATCTTGGTGTGCGTATT--CACACGCTATTCAAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52553242 310 + 80997621 AAAAGCACAGTTTTTACTACtatgtgcgtctagtcatgatttatgtatgtgtatgtatgtgtgggtatatattacatatatgtggtgagtgtatatat--acatatatatgtatacatGTGTTCACAACATTCTGATATAAAGGATATGTCAGATTTA--------TATGTTCCTTGATTTAGAGAA--AAAAGGTTGATGACTTATTTTTTCTGTTTTCTAATTTATTGGGAAATACTATATATGTA-CATTT--AACAATAGACCAAGGGAAAAA-ATGAAAGAATGCCTTCATCTTGGTGTGCGTATT--CACACGCTATTCAAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47598343 310 + 74645514 aaaagcacagtttTTACTACCATGTGCGTCTAGTCAcgatttatgtatgtgtatgtatgtgtgggtatatattacatatatgtggtgagtgtatatat--acatatatatgtatacatgtgttcACAACATTCTGATATAAAGGATATGTCAGATTTA--------TATGTTCCTTGATTTAGAGAA--AAAAGGTTGATgacttattttttctgttttctaatttattgggaaatactatatatgta-cattt--aacaATAGaccaagggaaaaa-atgaaagaatgcctTCATCTTGGTGTGCGTATT--CACACGCTATTCAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9864735 285 - 75148670 AAAAGCACAGTTTTTACTACCATGTGCGTCTAATCACGATTTAtgtatgtgtatg-------------------------tgtggtgagtgtatatat--acatatatatgtatacatGTGTTCACAACATTCTGATATAAAGGATATGTCAGATTTA--------TATGTTCCTTGATTTAGAGAA--AAAAGGTTGATGACTTATTTTTTCTGTTTTCTAATTTATTGGGAAATACTATATATGTA-CATTT--AACAATAGATCAAGGGAAAAA-ATGAAAGAATGCCTTCATCTTGGTGTGCGTATT--CACACGCTATTCAAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112710579 296 + 159171411 AAAAGCACACTTTTTAGTACCATGTGGATCTAGTAACAGTTTATGTGTGTGTATGTATGTGTGGGTA-ATATTACATATATGCAGTATATGTATATAT--------------------GTGCTCACAACATTCTGATATAAAGGTTATGTCAGATTTACAGATTTGCATGTTCCTTGATTTAGAGAA--AAAA-GTGGATGACTTATTTTTTCTATTTTTTTATGTATTGAGAAATATTATATATTTCTCATTT--AACAATAGATCAAGGAAAAAATATTAAAGAATGCCTCTA----GGTATGCGTATT--CACACGCTCTTCAAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39276810 227 - 61074082 -----CACATATCGTAC------------------ACAATTCATAAATGTGTAT----------------------------------------------------------ACACATGTGCTCACAACGTTCTGCGCTAAAGGAGATGTCAGATTTA--------CATATTCCCTGATTTGGGGGAATAAAAGGCTGAT-ACCAA--CTTTCTATTTTCTTATTTATTGAGAA-------ACATATA-CATTTAAAAAAAAAGACTCAGTAAAAGA-ATTAAAGAATATCTTTGTCTTGGTGTAGATATTGAAAAGCACTATTCAAA i canFam3.chr9 C 0 C 0 e mm10.chr11 99451234 438 + 122082543 I a score=1389644.000000 s hg38.chr17_JH159146v1_alt 48839 400 + 278131 ACCACCCCACTTCACTTTTTCCTCTTTTTTCCACTGATGATTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttagagatctggacttgaatcctatttctgctacttg-------------cttgggcatggttcataacctctctgagcctcactttcctcatatggaaagtggaagacca-taataatggccagcatggtggtggtgtgaggattaaatgaaatgcca-tatctgaagtgca-ggtacagcacctggcatgtaggaagcacccagtgaggtgtagctTCTTAGTGGCAGCCGTGATCATAGTAGAAGTACTGTAATTGTAAACTTGGTGGTGGTGGCAA---GGAAAAGGCCACTAACATTTACCCTTCAGTATGCACTGAGCTAGT s panTro4.chr17 66168715 400 - 82630442 ACCACCCCACTTCGCTTTTTCCTCTTTTTTCCACTGATGATTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttagagatctggacttgaatcctatctctgccacttg-------------cttgggcactgttcataacctctctgagcctcactttcctcgtatggaaagtggaagacca-taataatggccagcatggtggtggtgtgaggattaaatgaaatgcca-tatctgaagtgca-ggtacagcagctggcatgtaggaagcacccagtgaggtgtagctTCTTAGTGGCAGCCGTGATCATAGTAGAAGTACTGTAATTGTAAACTTGGTGGTGGTGGCAA---GGAAAAGGCCACTAACATTTACCCTTCAGTATGCACTGAGCTAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24697574 401 - 73212453 ACCACCCCACTTCGCTTTTTCGTCTTTGCTCCACTGATGATTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttagagatctggacttgaatcctatctctgccacttg-------------cttgggcatggttcttgacctctctgagcctcactttcctcatatggaaagtggaagacca-taataatggccagcatggtggtggcgtgaggattaaatgaaatgccattatctgaagtgca-ggtacagcacctggcatgtaggaagcacccagtgaggtgtagctTCTTAATGGCAGCCGTGATCATAGTAGAAGTACTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAAGGCCTCTAACATTTACCCTTCAGTATGCACTGAACTAGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47917590 400 - 81552678 ACCACCTCACTTCACTTTTTCCTCTTTGCTCCACTGATGATTCTGAGC-ACTCTGCTAATGTC-ATAGATACCCAGTATTGaaaacac-agactttagagatctggacttgaatcctatctctgccacttg-------------cttgggcatggttcttaacctctctgagcctcactttcctcatatggaaagtggaagacca-taataatggccagcatggtggtggtgtgaggattaaatgaaatgcca-tatctgaagtgca-ggtatagcacctggtatgtaggaagcacccagtaaggtgtagctTCTTAGTGGCAGCCATGATCACAGTAGAAGTACTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAAGACCACTAACATTTACCCTTCAATATGCACTGAACTAGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53030862 399 + 80904711 ACCACCCCACTTCCCTTTTTCCTCTTTGCTGCACTGATGGTTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttggagatctggacttgaatcctctctctgccacttg-------------cttgggcaagattcttagcctccctgagcctcactttcctcctatggaaagtggaagaccg-tcataatggccagcatggtggtggtgtgaggattacatgaaatgcca-tatctgaagtgca-ggtacagcacctggtatgtaggacgcacccagtgaggtgtagc-tctTACTAGCAGCCGTGATCATAGTTGAAGTGCTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAAGGCCACTAACATTCACCCTTCAATGTGCACTGAGCTAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52553552 399 + 80997621 ACCACCCCACTTCCCTTTTTCCTCTTTGCTGCACTGATGGTTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttggagatctggacttgaatcctctctctgccacttg-------------cttgggcaagattcttagcctccctgagcctcactttcctcctatggaaagtggaagaccg-tcataatggccagcatggtggtggtgtgaggattacatgaaatgcca-tatctgaagtgca-ggtacagcacctggtatgtaggacgcacccagtgaggtgtagc-tctTACTAGCAGCCGTGATCATAGTTGAAGTGCTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAAGGCCACTAACATTCACCCTTCAATGTGCACTGAGCTAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47598653 399 + 74645514 ACCACCccacttccctttttcctctTTGCTGCACTGATGGTTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGAAAACAC-AGACTTTGGAGATCTGGACTTGAATCCTCTCTCTGCCACTTG-------------CTTGGGCAAGATTCTTagcctccctgagcctcactttcctcctaTGGAAAGTGGAAGTCCG-TCATAatggccagcatggtggtggtgtgaggattacatgaaatGCCA-TATCTGAAGTGCA-GGTACAGCACCTGGTATGTAGGACGCACCCAGTGAGGTGTAGC-TCTTACTAGCAGCCGTGATCATAGTTGAAGTGCTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAAGGCCACTAACATTCACCCTTCAATGTGCACTGAGCTAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9865020 399 - 75148670 ACCACCCCACTTCCCTTTTTCCTCTTTGCTGCACTGATGCTTCTGAGC-ACTCTGCTAATGTT-ATAGATACCCAGGATTGaaaacac-agactttggagatctggacttgaatcctctctctgccacttg-------------cttgggcaagattcttagcctccctgagcctcattttcctcctatggaaagtggaagaccg-tcataatggccagcatggtggtggcatgaggattacatggaatgcca-tatctgaagtgca-ggtacagcacctggtatgtaggacgcacccagtgaggtgtagc-tctTACTAGCAGCCGTGATCATAGTTGAAGTGATGTAATTGTAAACTTGGTGACGGTGGCAA---GAAAAAGGCCACTAACATTCACCCTTCAATGTGCACTGAGCTAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112710875 390 + 159171411 ACCATCCCACTTTGCTTTTTCCTCTTTGCTGTACTGATGATTCTGAGT-GCTCTGCTAGTGTT-ATAGATACCCAGGATTGAACAcac-agactttggagaactggacctgaatcctatctctgtca---------------------ggcaagattcttaacctctcggaaactcactttcctcatatggaaagtggaagacag-taatgatgcccagcatggtggcattgtgaggattaggtgaaatgcca-tatctgaagtgca-agtacaatgcctggtgtgtaggaagcacccagtgaggtgtagc-tATCAGCAGCAGCTGTGATCGTGGTAGAAACACTGTAATTGTAAACTTGGTGATGGTGGCAA---GAAAAGAGCCACTAACATTCACCCTTCGATATGCACTGAG-TAGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99451672 379 + 122082543 CCCATCCAATGTCACTTTTGCCTGTTTTCTGAACAGATTATTCTGAGCAATTCTGC---------TAGCTGCCAAGGACT-AAGACAC-Aga-ggcagagagctgtttcagaa-cctgcctcta-cacttgtttaccatgagaacttgggcaaggt--------------------gttttcttcagtcatgaagtggaggatgg-agccagtgaccagtatagcattggtgttaggagtaaatgagggtgta-tctctgaggtgcacaacatggtacttggta-gtaggaagtacccagtgaactgtagc-tcCTCATAGCAGATGTGAT---AATAGAAAGATAGGGATTATAAACTTGGTGATGGCTACAATCTGGTGAAGACCAATAACA--AGCCATTAAATGTTAACTGGGGTAat i mm10.chr11 I 438 I 690 s canFam3.chr9 39277037 395 - 61074082 ACCATCCAACATCACTTTTGCCTTTTTAATAC-TTTCTGATCCAGAAC-CTGCTACTAGTATTAATAGATAAGAAGGGTTGGAagcacaagactttggggctctgtatttgaatcct--ctctgccatttatttgctgtgtgaatatggctaaggttcttaacatctctgagcctcactttcctcttatgtaaagtggagaatggttaatgatgcctagcatggcattactatgaagcttgaatgaagtgatg-tatttgaaatgcttagcacaatacctgatgtgtagcaagcactcagtgagttttagc-tact------------------agtaGAGGTGCAATAATTGTGAACTTGGTATTAGAGACAA---GGAAAGGGCCAGTAACATTTACCATTCAGTGTGCACTAGGCTAGT i canFam3.chr9 C 0 C 0 a score=74970.000000 s hg38.chr17_JH159146v1_alt 49239 19 + 278131 AGCATTGTGTCATGGATGC s panTro4.chr17 66169115 19 - 82630442 AGCATTGTGTCATGGATGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24697975 19 - 73212453 AGCATTGTGTCATGGATGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47917990 19 - 81552678 AGCATTGTGTTATGGGTGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53031261 19 + 80904711 AGCATTGTGTCATGGATGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52553951 19 + 80997621 AGCATTGTGTCATGGATGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47599052 19 + 74645514 AGCATTGTGTCATGGATGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9865419 19 - 75148670 AGCATTGTGTCATGGATGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112711265 19 + 159171411 AGCATTGTGTCATGGATGC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39277432 19 - 61074082 AGCGTTGTGTCATTGATAC i canFam3.chr9 C 0 C 0 e mm10.chr11 99452051 690 + 122082543 I a score=892039.000000 s hg38.chr17_JH159146v1_alt 49258 244 + 278131 TCACTGAGCCTGTGCAGCTAGTACAAGGTAAGCTGAAGGACAA------CCCGGAGGAAAATATAATTGAGAAAACACATGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCCACATCTcagatatttatggattacttaagataatagactgtgtactgggcattgaggacagaaagatggataagacaaggtcctgtcttccagTCT s panTro4.chr17 66169134 244 - 82630442 TCACTGAGCCTGTGCAGCTAGTACAAGGTAAGCTGAAGGACAA------CCCAGAGGAAAATATAATTGAGAAAACACGTGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCCACATCTCAGATATTTATGGATTAATTAAGATAATagactgtgtactgggcattgaggacagaaagatggataagacaaggtcctctcttccAGTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24697994 244 - 73212453 TCACTGAGCCCGTGCAGCTAGTACAAGGTAAGCTGAAGGACAA------CCCGGAGGAAAATATAATTGAGAAAACACGTGATTACTTTCC----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCCACATCTCAGATATTTATGTATTACTTAAGATAATAGactctgtactgggcattgaggacagaaagatgcataagacaaggtcctgtcttccagTCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47918009 244 - 81552678 TCACTGAGCCCGTGCAGCTAGTACAAGGTAAGCTGAAGGACAA------CCCGGAGGAAAATATAATTGAGAAAACACGTGATTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCCACATCTCAGATATTTATGGCTTACTTAAGATAATAGactctgtactgggcattgaggacagaaagatgcataagactaggtcctgtcttccagTCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53031280 244 + 80904711 TTATTGAGCCCGTGCAGCTAATACAAGGTAAGCTGAAGGACAA------CCCAGAGGAAAATATAATTGAGAAAATACATGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACGTAGAGGATCTACATCTcagatacttatggattacttaagataacagactctgtactgggcattgaggacagaaagatacataagacaaggtcctgtcttcCAGTCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52553970 244 + 80997621 TTATTGAGCCCGTGCAGCTAATACAAGGTAAGCTGAAGGACAA------CCCAGAGGAAAATATAATTGAGAAAATACATGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCTACATCTcagatacttatggattacttaagataacagactctgtactgggcattgaggacagaaagatacataagacaaggtcctgtcttcCAGTCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47599071 244 + 74645514 TTATTGAGCCCGTGCAGCTAATACAAGGTAAGCTGAAGGACAA------CCCAGAGGAAAATATAATTGAGAAAATACATGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAGCCATGAATGATTTACATAGAGGATCCACATCTCAGATACTTATGGATTACTTAAGATAACAGACTCTGTACTGGGCATTGAGGACAGAAAGATACATAAGACAAGGTCCTGTCTTCCAGTCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9865438 244 - 75148670 TTATTGAGCCCGTGCAGCTAATACAAGGTAAGCTGAAGGACAA------CCCAGAGGAAAATATAATTGAGAAAATACATGACTACTTTCA----AACATTTACAGTGACCCAGAAGTAT---AAGTGGGAGGAATCATGAATGATTTACATAGAGGATCCACATCTcagatacttatggattacttaagataacagactctgtactgggcattgaggacagaaagatacataagacaaggtcctgtcttcCAGTCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112711284 246 + 159171411 TCATTGAGCCCATGCAGCCAGTACTAGGTAAGCCAAGAAAATATTATTTTCTGGAAGAAAATATTATTGAGAAAACACATTATTACTTTGA----AATATCTACAGTGACCCAGAAGTGT---CATTGGGAGGAGCCAAGAATGATTTACATAGAGGAGGCACATCTCAGATA-TTGTGGATTACTT-AGATAATAGACTCtg--ctgggtattgaggacagaaagatgcttaagacgaggtcctatcctctagTCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99452741 223 + 122082543 TCACTGGGCTCATATAGGTAATATTAGGTAAGTTGGAAACATA----TTTCTGAAGGAGACTGTGACTGAGGACATATATGATCACTTTGATATTCATATGCATAGTGACCAGGAAGTATTGCAAGTGGGAGGGTCTAAGAAAGACTTACAGAGAACATCAACTTTTCAGATATTCATGGACTAGTTAGGAT------------------------------AGAGTTTCATGTGATAAGGTCTTGTCCTAAAGTCT i mm10.chr11 I 690 I 1089 s canFam3.chr9 39277451 226 - 61074082 TGACTGAGCCCTTGTGGCTAGTACTAGGTAAACTGAAGGACAA---CCTTCTGGATGAAAATGTAATTGAGAAAGCATGTGAAAACTTTGA----AATATGCACAGTGACTCAGAACTATTATAAGTAGAAGGAGCTGTGAATGATTTATGTAGAATATCAACACATCAGATATTC------------------------Ttgtggtgagcactgaggataaaaagatgcaaaagacaaggtcctgtcttcaagtct i canFam3.chr9 C 0 C 0 a score=1371369.000000 s hg38.chr17_JH159146v1_alt 49502 428 + 278131 TTCCCACTC------CTCtgtgtgtgtgtgtgtgtgtgtgtgt------------gtgtgtgtttgtgtgtgtgtgtCTGTATTGGGGTGGTGAGAGCCAGAGAAGAAAACCTGATG-GATGAGACCATAAGAGATGAACTCA---------------CCTCCCTGGGTGATGTCCGGGGCTGGTTCCGTGCTTTTGCCCCAAGGAGTTCATATTGAAATGGAGAGGATGGATAACTCAAGCTCCACCTGACCTCCTAGAAGagtgctgtccagtactgagccacataggtaattttaaattttctactagccaaa-ttaaaaaagtagaaac--aggtgaaattaattttaataatatcctttgtttaacccaatatatccaaaacatagactcaatatacaattcttaatgggatatttatttta-ttttttgaattacatctttgaaaagtggtgtgcatttt s panTro4.chr17 66169378 420 - 82630442 TTCCCACTC------CTCtgtgtgtgtgtgtgtgtgtgtgtgt--------------------ttgtgtgtgtgtgtctgtATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCATAAGAGATGAACTCA---------------CCTCCCTGGGTGATGTCCAGGGCTGGTTCCGTGCTTTCGCCCCAAGGAGCTCATAATGAAATGGAGAGGATGGATAACTCAAGCTCCACCTGACCTCCTAGAAGagtgctgtccagtactgagccacataggtaattttaaattttctactagccaaa-ttaaaaaagtagaaac--aggtgaaattaattttaataatatcctttgtttaacccaatatatctaaaatatagactcaatatacaattcttaatgggatatttatttta-ttttttgaattacatctttgaaaagtggtgtgcatttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24698238 440 - 73212453 TTCCCACTC------CtgtgtgtgtgtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgtgtgtttgtgtgtgtgtgCCTCTATTGGGGCGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCATAAGAGATATACTCA---------------CCTCCCTGGGTGATGTCCAGGGCTGGGTCCGTGCTTTTGCCCCAAGGATTTCATAATGAAATGGAGAGGATGGATAGCTCAAGCTCCACCTGACCTCCTAGAAGagtgctgtccaatagtgagccacataggtaattttaaattttctactagccaaa-ttaaaaaagtagaaac--aggtgaaattaattttaataatatcctttgtttaacccaatatatctaaaacatagaatcaatatacaattcttaatgggatatttatttta-ttttttgaattacatctttgaaaagtggtgtgcatttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47918253 430 - 81552678 TTCCCACTC------Ctgtgtttgtgtgtgagtgtgtgtgtgt----------gtgtgtgtgtgtgtgtgtgtgtgtgtgtATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTCACG-GATGAGACCGTAAAAGATGAACTCA---------------CCTCCCTGGGTGATGTCCAGTGCTGGTTCCGTGCTTTCACCCCAAGGAGTTCATAATGAAATGGAGAGGATGGATAACTCAGGCTCCACCTGACCTCCTAGAAGagtgctgtccaacagtgagccacatagataattttaaattttctactagccaga-ttaagaaagtataaac--aggtgaaattaattttaataatatcctttgtttaacccaatatatctaaaacatagaatcaatatacaactcctaatgcgatatttatttta-ttttttgaattacatctttgaaaagtggtgtgcatttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53031524 446 + 80904711 TTCCCACTCCTCTCTCTCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgcgtctgtgtATCTGTATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCATAACAGATGAACTCA---------------TCTCCCTGGGTGATGTCCACAGCTGGTTCCATGCTTTCACCCCAAAGAGTTCATAATGAAATGGAGAGGATGGATAACTCAAGCTGCACCTGACCTCCTAGAAGAATgctgtccaacagtgagccacataggtaattttaaattttctactagccaaa-ttaa-aaagtagaaac--aggtgaaattaattttaataacatcctttgtttaacccaaaatatctaaaacatagaatcaatatacaattcttaatgggatatttattttattttttttaattacatctttgaaaagtgatgtgcatttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52554214 441 + 80997621 TTCCCACTC----CTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTGCGTCTGTGTATCTGTATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCATAACAGATGAACTCA---------------TCTCCCTGGGTGATGTCCAGGGCTGGTTCCATGCTTTCACCCCAAAGAGTTCATAATGAAATGGAGAGGATGGATAACTCAAGCTGCACCTGACCTCCTAGAAGAATgctgtccaacagtgagccacataggtaattttaaattttctactagccaaa-ttaa-aaagtagaaac--aggtgaaattaattttaataacatcctttgtttaacccaatatatctaaaacatagaatcaatatacaattcttaatgggatatttatttta-ttttttgaattacatctttgaaaagtgatgtgcatttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47599315 439 + 74645514 TTCCcactc------ctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgcgtCTGTGTATCTGTATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCATAACAGATGAACTCC---------------TCTCCCTGGGTGATGTCCAGGGCTGGTTCCATGCTTTCACCCCAAAGAGTTCATAATGAAATGGAGAGGATGGATAACTCAAGCTCCACCTGACCTCCTAGAAGAATGCTGTCCAACAGTGAGCCACAtaggtaattttaaattttctactagccaaa-tcaa-aaagtagaaac--aggtgaaattaattttaataacatcctttgtttaacccaatatatctaaAACATAGAATCAATATACAATTCTTAatgggatatttatttta-ttttttgaattacaTCTTTGAAAAGTGATGTGCATTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9865682 429 - 75148670 TTCCCACTC------CTC----------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTGCGTCTGTGTATCCGTATTGGGGTGGTGAGAGCCAGAGAAGAAAACTTGATG-GATGAGACCGTAACAGATGAACTCA---------------CCTCCCTGGGTGATGTCCAAGGCTGGTTCCATGCTTTCACCCCAAAGAGTTCATAATGAAATGGAGAGGATGGATAACTCAAGCTCCACCTGACCTCCTAGAAGAATgctgtccaacagtgagccgcataggtaattttaaattttctactagccaaa-ttaa-aaagtagaaac--aggtgaaattaattttaataacatcctttgtttaaccaaatatatctaaaacatagaatcaatatacaattcttaatgggatatttatttta-ttttttgaattacatctttgaaaagtgatgtgcatttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112711530 421 + 159171411 TTTCCACTC------Ctgtgtgtgtgtgtgagtgtgtgtgtgt--------------------gtgtgtctgtgtgtctgtATTGGGGTGGTGAAAGCCGACGAAGAAAACTTGATGTGATGAGACCATCAGAGATGAACTCA---------------TCTCCCCGGGTGATGTCCAGGGCTGGTTCCATGCTCTCGCCCTAAGGAATTCATAAAGAAATGAAGAGGATGGATCAGTCAAGTTCCATCTGACCTCCTAGAAcagtgctgtccaacagcgagccacatatgtaattttaaatttcctactagccaaa-ttaaaaaagtagaaac--aggtgaaatacattttaataataccctttgtttaacccaatagatctaaaacataaaatgaatatacaattcttaatgggatatttattttc-tttttcgaattacatctttgaaaagtaatgtgcatttt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39277677 413 - 61074082 gctccactc------tggtgtgtgtgtgtgtgtgtgtgtgtgt----------------------------gtgtgcatgtgtt-gggtggagggaaccagagaagcaaacTTAGTGTGATGAAAAGTTGGGGAATAAACTCAGCTATCAGGTTGTTCCCTCCTTGGATGATGTCCAGGGCAATCCCC--------ACCCCAGGGAATTTATAATCAAATGGAGAGGATGGATAAGGGAAGCTCTGGTGGTGCTCCTAGAAcagtgctgttcaacagc-aatgacatatcccagttaaaattttcta-gagccacatttaaaaaggtaaaaataaaggtgatattaattttaataatgtattttgtttaagccaatatacccaaaacatataatc--tataaaattgttattgagatacttcact---ttttttg---tactttttaaaaaaatattttgtttatt i canFam3.chr9 C 0 I 223 e mm10.chr11 99452964 1089 + 122082543 I a score=46770.000000 s hg38.chr17_JH159146v1_alt 49930 20 + 278131 acactcagagtatatctcta s panTro4.chr17 66169798 20 - 82630442 acactcagagtatatctcta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24698678 20 - 73212453 acactcagaatatatcacta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47918683 20 - 81552678 acactcagagtatatctcta i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53031970 20 + 80904711 acactcagatttcatctcta i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52554655 20 + 80997621 acactcagatttcatctcta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47599754 20 + 74645514 ACACTCAGATTTCATCTCTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9866111 20 - 75148670 acaatcagatttcatctcta i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112711951 19 + 159171411 acattcagagcacatctct- i calJac3.chr5 C 0 C 0 e canFam3.chr9 39278090 223 - 61074082 I e mm10.chr11 99452964 1089 + 122082543 I a score=324734.000000 s hg38.chr17_JH159146v1_alt 49950 105 + 278131 tttagacaagccacatttcgaggactcaataggtacctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCtgctactcaaagtatggtccttgg s panTro4.chr17 66169818 105 - 82630442 tttagacaagctacatttcaaggactcaataggtacctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCtgctactcaaagtgtggtccttgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24698698 101 - 73212453 tttagaca----acatttcaaggactccataggtacctgtggttagtgtctaccttaaaggacagggtagTTCTAGAGCTCtgctactcaaaatgtggtccttgg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47918703 105 - 81552678 tttagacaagccacatttcaaggactcgataggtacctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCtgctactcaaagtgtggtccttgg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53031990 105 + 80904711 tgtagacaagccacatttcaagggctcgataggtacctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCtgctactcaaagtgtggttcttgg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52554675 105 + 80997621 tgtagacaagccacatttcaagggctcgataggtacctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCTGCTACTCAAAGTGTGGTTCTTGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47599774 105 + 74645514 TGTAGACaagccacatttcaagggctcGATAGGTACCTGTGGTTAGTGTCTACCTTAAGGGACAGGGTAGTTCTAGAGCtctgctactcaaagtgtggttcttgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9866131 105 - 75148670 tgtagacaagccacatttcaagggctcgataggtacctgtggttagtgtctaccttaagggacagggtagTTGTAGAGCTCTGCTACTCAAAGTGTGGTTCTTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112711970 91 + 159171411 --------------atttcaagggctctataggtccctgtggttagtgtctaccttaagggacagggtagTTCTAGAGCTCTGCCACTCGAAGTGTGGTGCTTGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99454053 70 + 122082543 ttGAGAGAAGCCATCTTT---AGTCTC------TCCCTGTTGCTAGTGTGTACCTCAAGGGACAGG-----------GCTTTGCT---------------CTCAT i mm10.chr11 I 1089 C 0 e canFam3.chr9 39278090 223 - 61074082 I a score=1292707.000000 s hg38.chr17_JH159146v1_alt 50055 354 + 278131 cctca-----cagtttcacagtgtagatatgccctctgtcccttccactcctcctaaattggaatttgcattgtaacaagatccatggtgagccctcaga-gtt-tgagaggggctgTCTGATGACTTGAAAATCTCATTTGAGGAAACTGCACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTCATCATAGATTAGGTAAACC---ATCTTATCATAGTCGGACCAAAGGTAGAGTTCAGTTTAGCCCTTGTTGGAACCAGTGGGATCTAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAGAGACAGG-ACAAAGATGAGAT----ACGAGTGTTTATT s panTro4.chr17 66169923 354 - 82630442 cctca-----cagtttcacagtgtagatatgccctctgtcccttccactcctcctaaatcggaatttgcattgtaacaagatccatggtgagccctcaga-gtt-tgagaggggctgTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACC-TTTCCTCATCATAGATTAGgtaaacc---atcttatcatagtcagaccaaaggtagagttcagtttagcccttgttggaaCCAGTGGGATCTAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAGAGACAGG-ACAAAGATGAGAT----ACGAGTGTTTATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24698799 354 - 73212453 cctca-----cagcctcacagtgtagatgtgccctgtgtcccttccactcctcctaaattggaatttgcgttgtaacaagatccatggtgagccctcaga-gtt-tgagaggggctgTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTCATCATAGATTAGGTAAATC---ATCTTATCATAGTCGGACCAAAGGTAGAGTTCAGTTTAGCCCTTGTTGGAACCAGTGGGATCTAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAAGAGAGACAGG-ACAAAGATGAGAT----ATGAGTGTTTATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47918808 354 - 81552678 cctca-----cagcctcacagcgtagatatgccctgtgtcccttccactcctcctaaatcggaatttgcattgtaacaagatccacggtgagccctcaga-gtt-tgagaggggctgTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTCATCATAGATTAGGTAAACC---ATCTTATCATAGTCGGACCAAATGTAGAGTTCAGTTTAGCCCCTGTTGGAACCAGTGGGATCTAGTTGGGTTTTTCTCAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAAAGACAGG-ACAAAGATGAGAT----ACGAGTGTTTATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53032095 354 + 80904711 cctca-----cagcctcacagcgcagatatgccctatgtcctttccacccctcctacattggaatttgcattttagcaagatccatggtgagccctcaga-gtt-tgggaggggctgTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTTATCGTAGATGAGGTAAACC---ATCTTATCATAGTTGGACCAAAGGTAGAGTTCAGTTTAGCCCTTATTGGAACCAGTGGGATATAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAAAGACAGG-ACAAAGAAGAGAT----ACGAGTGTTTATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52554780 354 + 80997621 CCTCA-----CAGCCTCACAGCGCAGATATGCCCTATGTCCTTTCCACCCCTCCTACATTGGAATTTGCATTTTAGCAAGATCCATGGTGAGCCCTCAGA-GTT-TGGGAGGGGCTGTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTTATCGTAGATGAGGTAAACC---ATCTTATCATAGTTGGACCAAAGGTAGAGTTCAGTTTAGCCCTTATTGGAACCAGTGGGATATAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAAAGACAGG-ACAAAGAAGAGAT----ACGAGTGTTTATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47599879 354 + 74645514 cctca-----cagccTCACAGCGCAGATATGCCCTATGTCCTTTCCACCCCTCCTACATTGGAATTTGCATTTTAGCAAGATCCATGGTGAGCCCTCAGA-GTT-TGGGAGGGGCTGTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTTATCGTAGATTAGGTAAACC---ATCTTATCATAGTTGGACCAAAGGTAGAGTTCAGTTTAGCCCTTATTGGAACCAGTGGGATATAGTTGGGTTTTTCTTAGTCGGAAGGTTGAGCTA-TTtggcagaaaatgaaggaaagacagG-ACAAAGAAGAGAT----ACGAGTGTTTATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9866236 354 - 75148670 -CTCA-----CAGCCTCACAGCGCAGATATGCTCTATGTCCTTTCCACCCCTCCTACATTGGAATTTGCATTTTAGCAAGATCCATGGTGAGCCCTCAGA-GTTGTGGGAGGGGCTGTCTGATGACTTGAAAATCTCATTTGAGGAAACTACACACCCTCCC-TTCTAGTCATATTTGTGCAGTACA-TTTCCTTATCGTAGATTAGgcaaacc---atcttatcatagttggaccaaaggtagagttcagtttagcccttatcggaaCCAGTGGGATATAGTTGGGTTTTTCCTAGTCGGAAGGTTGAGCTA-TTTGGCAGAAAATGAAGGAAAGACAGG-ACAAAGAAGAGAT----ACGAGTGTTTATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112712061 357 + 159171411 CCTCA-----CAGCCTTACCGCGTAGGTACGCCCTGCGTCCCTTCCACCCCTCCTAAATCGGAATTTGCATT-TAACAAGATACATGGTGAGGCCTCAGA-GTT-TGAGAGGGGCTGTCTGATGACTTGAAAATCTCACCTGAGGAGACTACACACCCTCCC-TTCTAGTCACATTTGTGCAGTGCA-TTTTCTTATCATAGATGAGATAAGCC---ATCTTATCACAATCGGACTAAAGGTAGCACTCAATTTAGCCCTTGTTTGAACCAGTGGGATCTAGTTGGGTTTTTCTTAGTCAAAAGGTTGAGCTG-TTTGGCAGAAAATAAAGGAAAGACAGA-ACAAAGATGAGACGGGAACAAGTGTTTATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99454123 311 + 122082543 CCTTA-----GTGTCT---------------CCCTGGGTCTCCCCTGCACCTCCCAAGTCTGACTC-------TAACAGGACCTGTGGTGAG---TCAGATGTC-TGGGGAAGCTTGTCT-------------------TTGACGAGACCATGCACTCTCCC-CTGTAACCATGTTTGTGCAGTACA-TACCCTTATCGTAGATTAGGTAAACCTTTTTTTTATCACAGTCAGACCAAAGGTGGACTTT-GCTTAGCCCTCTCTGGAATCAGCGGCATCTAGTAAGACTTTTCTTGATTAGAAGGATTCGATA-TTTAGAAGAAAAAAAATGCCAGGCAGACACTAGATGGGGAC----ACA---TTTTATT i mm10.chr11 C 0 C 0 s canFam3.chr9 39278313 358 - 61074082 cCTCAGTAGGCTGCCTTACAGTAAAGATGTCCCCTGGGTTCTAAACTTATATCCTGAATCAGAATCTACATGTT---AAGAGCCTTGGTGAGTCACTGAT-GCT-TGAGATGTGCTGCCTCATAACTTGAAAAGCTGATTACTTGAGATCACCCACACCCATGCTCTAATCATATTCCTGCTGTACATTTTCCTTATCATGGATTAGGTAAGCC---ATCTTATCATGACCAGACCAAAGGTAGGGTTCATTTTAGCCCTTGTTGGAATCAGTGGCATCTCATTAGG-TTTTATAAATCAGAAGATTGAGATATTTTAGTGAAAAATGATGGGTAG---GG-CCAAAGATGTGATGGG-GCCAATGtttttt i canFam3.chr9 I 223 I 3922 a score=51337.000000 s hg38.chr17_JH159146v1_alt 50409 14 + 278131 CAACCACAGAACAA s panTro4.chr17 66170277 14 - 82630442 CAACCACAGAACAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24699153 14 - 73212453 CAACCACAGAACAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47919162 14 - 81552678 CAACCACAGAACAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53032449 14 + 80904711 CAACCACAGAACAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52555134 14 + 80997621 CAACCACAGAACAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47600233 14 + 74645514 CAACCACAGAACAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9866590 14 - 75148670 CAACCACAGAACAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112712418 14 + 159171411 CAACCACGGAACAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99454434 14 + 122082543 CAGCCATGTAATGA i mm10.chr11 C 0 C 0 e canFam3.chr9 39278671 3922 - 61074082 I a score=618348.000000 s hg38.chr17_JH159146v1_alt 50423 176 + 278131 ATGACATCACCATTGTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAAAGGAGTGAAGAAGGGAAGAGAGTGAG-------AGCTTCCAAATTCATGGGGTTTTCGTTATGTCAGAGTTCTTCC-CCTAGGGTTAGCCTCATGAGCACGTGAgcttggaagggcctggcactt s panTro4.chr17 66170291 176 - 82630442 ATGACATCACCATTGTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAAAGGAGTGAAGAAGGGAAGAGAGTGAG-------AGCTTCCAAATTCATGGGGTTTTCGTTATGTCAGAGTTCTTCC-CCTAGGGTTAGCCTCATGAGCACGTGAgcttggaagggcctggcactt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24699167 176 - 73212453 ATGACATCACCATTGTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAAAGGAGGGAAGAAGGGAAGAGAGTGAG-------AGCTTCCAAATTCATGGGGTTTTCGTTATGTCAGAGTTCTTCC-CCTAGGGTTAGCCTCATGAGCAAGTGAgcttggaagggcctggcactt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47919176 176 - 81552678 ATGACATCATCATTCTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAAAGGAGGGAAGAAGGGAAGAGAGTGAG-------AGCTTCCAAATTCATGGGCTTTTCGCTATGTCAGAGTTCTTCC-CCTAGGGTTAGCCTCATGAGCACATGAgcttggaagggcctggcactt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53032463 176 + 80904711 ATGACATCACCATTCTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAGAGGAGGGAGGAAGGGAAGAGAGTGAG-------AGTTTCCAAATTCATGAGGTATTCGTTATGTCAGAGTTCTTCC-CCCAGGGTTAGCCTCACGAGCACATGAgcttggaagggcctggcactt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52555148 176 + 80997621 ATGACATCACCATTCTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAagggagagaggagggaggaagggaagagagtgag-------AGTTTCCAAATTCATGAGGTATTCGTTATGTCAGAGTTCTTCC-CCCAGGGTTAGCCTCACGAGCACATGAgcttggaagggcctggcactt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47600247 176 + 74645514 ATGACATCACCATTCTCATTGGAGCTCTTCTTTTCTGACATACGTTttgaaagggagagaggagggaggaagggaagagagtgaC-------AGCTTCCAAATTCATAAGGTATTCGTTATGTCAGAGTTCTTCC-CCCAGGGTTAGCCTCATGAGCACATGAGCTTGGACGGGCCTGGCACTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9866604 171 - 75148670 ATGACATCACCATTCTCATTGGAGCTCTTCTTTTCTGACATATGTTTTGAAAGGGAGAGAGGAGGGAGGAAGGGAAGAGA--GAG-------AGCTTCCAAATTCATGAGGTAT---TTATGTCAGAGTTCTTCC-CCCAGGGTTAGCCTCATGAGCACATGAgcttggaagggcctggcactt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112712432 176 + 159171411 AGGACATCACTATTCTCATCGGAGCTCTTGTTTCCTGACATACGTTTTGAAAGGGAGAAAGGGGGGAAGAAGAGAAGAGAGTGAG-------AGCTTCCAAATTCACGGGGTTTTCGTTATGGCTGAGTTCTTCC-CCCAGGCTTGGTCTCATGAgcacaggagcttagaagggcctggcactt i calJac3.chr5 C 0 C 0 s mm10.chr11 99454448 125 + 122082543 ATGACATGGCTATTTTA--------------------------GTTATAAAAGTCGGGAAGGGAGG----AGGGGAGGGATAGAG-------AGTTTCT-AACCCAT-------------CATCTGCATTCCTCT-CTC-GGGTCAGCTTTGTGAGTATATATG------AATCTCTGAATCTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21791780 182 + 61074082 ATGACACTACCATTGTCATCATAGCTATTCTTTTTGGACATATGTTTTGAGAGGGGGAAAG--AGGAGGAAAGGGAGTGAGAGGGTCTGGTTAGTATCCTAATTCATGGGTTTTTAATTATGTCAGAGTCTTTCTGCACAGAGTTGGCTTCATGAGCATATGACCTTAGAAGGATCTGGCACTT i canFam3.chr9 n 3922 I 410 a score=519223.000000 s hg38.chr17_JH159146v1_alt 50599 164 + 278131 ggattaatgctctgctgttgcagtgttgaaattcttgacaattgggtccggcatgcctgctt-------------------------------------------tataccgagccctgaaaattatgtagcttgtcctgCCTCCCCTAAATGTCCACT---TACTATCCACCTGCAGGTGTAAGAG--TCACACTGGATTAGGTAGGTTTT s panTro4.chr17 66170467 166 - 82630442 ggattaatgctctgctgttgcagtgttgaaattcttgacaattgggtccggcatgcctgctt-------------------------------------------tataccgagccctgaaaattatgtagcttgtcctgCCTCCCCTAAATGTCCACT---TACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24699343 166 - 73212453 ggattaatgctctgctgttgtagtgttgaaattcttgacaattgagtcctgcatgcctgctt-------------------------------------------tataccgagccccgcaaattatgtagcttgtcctgCCTCCCCTAAATGTCCACT---TACTATCCACCTGCGGGTGTAAGAGAGTCACACTGGATTGGGTAGGTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47919352 166 - 81552678 ggattaatgctctgctgttgcagtgttgaaattcttgacaattgggtcctgcaggcctgctt-------------------------------------------tgtaccgagccctgcgaattatgtagcttgtcctgCCTCCCCTAAATGTCCACT---TACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53032639 169 + 80904711 ggattaatgctctgctgttgcagtgttgaaattcttgacaattgggtcctgcatgtctgctt-------------------------------------------tctaccgagccctgaaaattatgtagcttgtcctgCCTCCCCTAAATGTTCACTTACTACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52555324 169 + 80997621 ggattaatgctctgctgttgcagtgttgaaattcttgacaattgggtcctgcatgtctgctt-------------------------------------------tctaccgagccctgaaaattatgtagcttgtcctgCCTCCCCTAAATGTTCACTTACTACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47600423 169 + 74645514 GGattaatgctctgctgttgcaGTGTTGAAATTCTTGACAATTGGGTCCTGCATGTCTGCTT-------------------------------------------TATACCGAGCCCTGAAAATTATGTAGCTTGTCCTGCCTCCCCTAAATGTTCACTTACTACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9866775 169 - 75148670 ggattaatgctctgccgttgcagtgttgaaattctcgacaattgggtcctgcatgtctgctt-------------------------------------------tataccgagccctgaaaattatgtagcttgtcctgCCTCCCCTGAAAGTTCACTTACTACTATCCACCTGCAGGTGTAAGAGAGTCACACTGGATTAGGTAGGTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112712608 166 + 159171411 ggattaattctctgctgttgcagtgttgaaattcttaacaatcgaattctgcatgtctgttt-------------------------------------------tatactggaccctccaaagtatgtagcttctcctgCCTCCCCTAAATGTTCACT---TACTGTCCACATGCTGGTGTAAGAGAGTCACATTGGATTAGGTAGGTCTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99454573 197 + 122082543 GACTGATAGTTCTGCT------GTGTTGAATCTCCTAGCTATTT--TTGGACAAAGCTGTTTTTTGGTTTTTTTGTTGTTTTTGTTTGGACAAAGCTTTTGCATCTATTTTTGGCCCTGAAAACTATGTAGAGCGCTCACACTCAGCAAATCGCGTCCT---TACTGT-TACCTGCAGGCATAAGAGAGTAA---TGGATTAGGGAGGTATT i mm10.chr11 C 0 I 13 e canFam3.chr9 21791962 410 + 61074082 I a score=338341.000000 s hg38.chr17_JH159146v1_alt 50763 126 + 278131 GGGAGGCATTTTCTCTTTAtgtgtgtgtatgtatgtgtgggtatatat--tatatatgtggtgggtgtatatatacacatatgtatgtatatatGTGTTCACAACATTATGATATAAAGGATATGTGC s panTro4.chr17 66170633 126 - 82630442 GGGAGGCATTTTCTCTTTATGtgtgtgtatgtatgtgtgggtatatat--tatatatgtggtgggtgtatatatacacatatgtatgtatacatgtGTTCACAACATTATGATATAAAGGATATGTGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24699509 112 - 73212453 AGGAGGCATTTTCTCTTtatgtgtgtgtatgtatgtatgggtatatattatatatatgtggtgggtgtatatatac----------------atgtgtTCACAACATTATGATATAAAGGATATGTTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47919518 128 - 81552678 GGGAGGCATTTTCTCTTtatgtgtgtatatgtatgtctggctatgtattatatatatgtggtgggtgtatatatacacatatgtatgtatacatGTGTTCACAACATTATGATATAAAGGATATGTCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53032808 128 + 80904711 GGGAGGCGTTTTCTCTTtatgtgtgtctatgtatgtgtgggtatatattatatatatgcggtgggtgtatatatacgcatatgtatgtatacatgtgtTCACAAAATCATGATATAAAGGATATGTCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52555493 128 + 80997621 GGGAGGCGTTTTCTCTTtatgtgtgtctatgtatgtgtgggtatatattatatatatgcggtgggtgtatatatacacatatgtatgtatacatGTGTTCACAACATCATGATATAAAGGATATGTCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47600592 128 + 74645514 GGGAGGCGTTTTCtctttatgtgtgtatatgtatgtgtgggtatatattatatatatgcggtgggtgtatatatacacatatgtatgtatacatgtgttcACAACATCATGATATAAAGGATATGTCc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9866944 128 - 75148670 GGGAGGTGTTTTCTCTTtatgtgtgtatatgtatgtgtgggtatatattatatatatgcggtgggtgtatatatacacatatgtatgtatacatGTGTTCACAACATCATGATATAAAGGATATGTCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112712774 101 + 159171411 AGGAGGCATTTTCTTTTTATGTGTGTGTATGTATGTGTGGGTATATACCATATATAT---------------------------ATTTATACAGGTGTTCACAACATTTTAATATAAAGGCTATGTCC i calJac3.chr5 C 0 C 0 e canFam3.chr9 21791962 410 + 61074082 I e mm10.chr11 99454770 13 + 122082543 I a score=633489.000000 s hg38.chr17_JH159146v1_alt 50889 272 + 278131 TGggccaggtacggtggctcacgcctgtaatcccagcactttcggaggctgaggcgggcggatcacgaggtcaggagttcgagatcagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaaatgtggtagcacgtgcctgtattcccaactacttggaaggctgaggtaggagaattgctt--------gaggtggaggttgctgtgagcgaagatcaagccactgcactccagcctgggcaacagggagagactccatc s panTro4.chr17 66170759 272 - 82630442 TGggccaggtacggtggctcacgcctgtaatcccagcactttcggaggctgaggcgggcggatcacgaggtcaggagttcgagatcagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaaatgtggtagcacgtgcctgtattcccaactacttggaaggctgaggtaggagaattgctt--------gaggtggaggttgctgtgagccaagatcaagccactgcactccagcctgggcaacagggagagactccatc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24699621 272 - 73212453 TGggccaggtacggtggctcacgcctgtaatcccagcgctttcggaggccgaggtgggcggattacgaggtcaggagttcgagatcagcctgaccaacatggtgaaaccccatctccactaaaaatacacagattagccgaatgtggtagcacgtgcctgtaattccaactacttgggaggctaaggtaggagaattgctt--------gaggtggaggttgccatgagccgagatcatgccactgcactccagcctgggcaacagagagagactctgtc i ponAbe2.chr17 C 0 I 928 s nomLeu3.chr19 47919646 272 - 81552678 TGggccaggtacagtggctcacacctgtaatcccagcacttttggaggccaaggtgggcggatcacgaggtcaggagttcgagatcagcctgaccaacatggtgaaaccccatctctacaaaaaatacaaaaattagccgaatgtggtagcacgtgcctataatcccaaccacttgggaggctgaggtaggagcattgctt--------gaggtgaaggttgccatgagccgagactgtgccactgcactccggcctgggcaacagagagagactccctc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53032936 279 + 80904711 TGggccgggtacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggagttcgagatcagcctggccagaatggggaatccccatctctactaaaaatacaaaaattagccgaatgtggtagcatgtgtctgtaatcccagctacttgggtggctga-ggaggagaattgcttgaacttgggagggggaggttgcggtgagcggagatcacgccactgccctccagcctgggcaacagagagagactccgtc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52555621 279 + 80997621 TGggccgggtacggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggagttcgagatcagcctggccagcatggggaaaccccatctctactaaaaatacaaaaattagccgaatgtggtagcatgtgtctgtaatcccagctacttgggaggctga-gtaggagaattgcttgaacttgggagatggaggttgcggtgagccgagatcacgccactgcactccagcctgggcaacagagagagactccgtc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47600720 279 + 74645514 tgggccgggtacggtggcccacgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagttcgagatcagcctggccaacgtggggaaaccccatctctactaaaaatacaaaaattagccgaatgtggtagcatgtgtctgtaatcccagctacttgggaggctga-gtaggagaattgcttgaacttgggaggtggaggttgcggtgagtcgagatcatgccactgcactccagcctgggcaacagagagagactccgtc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9867072 279 - 75148670 TGggccgggtacggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcagatcacaaggtcaggagttcgagatcagcctggccaacatggggaaaccccatctctactaaaaatacaaaaattagccgaatgtggtagcatgtgtctgtaatcccagctacttgggaggctga-gtaggagaattgcttgaacttgggaggtggaggttgcggtgagccgagatcacgccactgcactccagcctgggcaacagagagagactccgtc i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21791962 410 + 61074082 I e mm10.chr11 99454770 13 + 122082543 I e calJac3.chr5 112712875 0 + 159171411 C a score=69502.000000 s hg38.chr17_JH159146v1_alt 51161 40 + 278131 tcaaaaaaaaaa-------aaaaaaaa---------------GGGATATGTCCCGGATCAGC s panTro4.chr17 66171031 43 - 82630442 tcaaaaaaaaaa-------aaaaaaaa----------aaaaaGGGATATGTCCTGGATC--C i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24700821 55 - 73212453 tcaaaaaaaaaa-------aaaaaaaaaaaaaaaaaaaaaaaGGGATATGTCCTGGATCAGC i ponAbe2.chr17 I 928 C 0 s nomLeu3.chr19 47919918 39 - 81552678 tcacaaaaaaaa-------aaaCAAGG----------------GATTATGTCCTGGATCAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53033215 56 + 80904711 tcaaaaaaaaaa-aaaaagaaaaaaaa-----aggaaaaaaaaggaaaTGTCCTGGATCAGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52555900 48 + 80997621 tcaaaaaaaa---------aagaaaaa-----aggaaaaaaaaGGAAATGTCCTGGATCAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47600999 50 + 74645514 tcaaaaaaaaaa-------aagaaaaa-----agaaaaaaaaaggatatgtcCTGGATCAGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9867351 57 - 75148670 tgaaaaaaaaaaaaaaaaaaaaaaaaa-----aggaaaaaaaaGGATATGTCCTGGATCAGC i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21791962 410 + 61074082 I e mm10.chr11 99454770 13 + 122082543 I e calJac3.chr5 112712875 0 + 159171411 C a score=35560.000000 s hg38.chr17_JH159146v1_alt 51201 11 + 278131 TGGATCAGGTA s panTro4.chr17 66171074 11 - 82630442 TGGATCAGGTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24700876 11 - 73212453 TGGATCAGGTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47919957 11 - 81552678 TGGATCAGGTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53033271 11 + 80904711 TGGATCAGGTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52555948 11 + 80997621 TGGATCAGGTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47601049 11 + 74645514 TGGATCAGGTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9867408 11 - 75148670 TGGATCAGATA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112712875 11 + 159171411 TGGATTAGGTA i calJac3.chr5 C 0 C 0 e canFam3.chr9 21791962 410 + 61074082 I e mm10.chr11 99454770 13 + 122082543 I a score=47630.000000 s hg38.chr17_JH159146v1_alt 51212 15 + 278131 GG-TTTGGGAGGTGTT s panTro4.chr17 66171085 15 - 82630442 GG-TTTCGGAGGTGTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24700887 15 - 73212453 GG-TTTGGGAGGTGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47919968 15 - 81552678 GG-TTTGGGAGGTGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53033282 16 + 80904711 GGTTTTGGGAGGTGTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52555959 16 + 80997621 GGTTTTGGGAGGTGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47601060 16 + 74645514 GGTTTTGGGAGGTGTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9867419 16 - 75148670 GGTTTTGGGAGGTGTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112712886 16 + 159171411 GGTTTTGGGAGGCATT i calJac3.chr5 C 0 C 0 s canFam3.chr9 21792372 15 + 61074082 GG-TTTGGGAGGAGCT i canFam3.chr9 I 410 I 4 e mm10.chr11 99454770 13 + 122082543 I a score=1484682.000000 s hg38.chr17_JH159146v1_alt 51227 424 + 278131 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCTTAAGAAAT---AAAAAAGAGATAACACAGGCCTTTGGGAGAATCGAGATCAATAATGCATTAGATAATGGTGTTCTGAGGCAGGATTTCAATGAAAGGCTAAGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAACCTTGTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGAGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCATGTTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTAAAAATGTTA--AACAAAGAATAAAAGTATATTCTCAAGATGACTC--ATGAGG--AAAAAA s panTro4.chr17 66171100 424 - 82630442 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCTTAAGAAAT---AAAAAAGAGATAACACAGGCCTTTGGGAGAATTGAGATCAATAATGCATTAGATAATGGTGTTCTGAGGCAGGATTTCAATGAAAGGCTAAGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAACCTTGTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGAGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCATGTTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTAAAAATGTTA--AACAAAGAATAAAAGTATATTCTCAAGTTGACTC--ATGAGG--AAAAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24700902 397 - 73212453 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCCTAAGAAAT---AAAAAAGAGATAACACAGGCCTTTGGGAGAATTGAGCTCAATAATGCATTAGATAATGGTGTTCTGAGGCAGGATTTCAGTGAAAGGCTAAGTGCTGTAACTATGTAACGAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAACCCTGTCT-GCAGGTTTACAATC----ATCTGCAGTGTTTGAATAGAGCTCGGGGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCATGTTGCAAGTTTTATATGGGTGAAAGT---------------------------TAAAAATGTTA--AACAAAGAATAAAAGTACATTCTCAAGTTGACTC--ATGGGG--AAAAAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47919983 424 - 81552678 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCCTAAGAAAT---AAAAAAGAGATAACACAGGCCTTTGGGAGAACTGAGCTCAATAATGCATTAGATAATGGTGTTCTGAGGCAGGATTTCAATGAAAGGCTAAGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAACCCTGTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGGGATCTCTGGGCAGTGACAGTGAGTCAGCTGGGCCCATTCATGTTGGAAGTTTTATATGAGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTCAAAATGTTA--AACAAAGAATAAAAGTATATTCTCAAGTTGACTC--ATGAGG--AAAAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53033298 424 + 80904711 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCC-AAGAAAT---GAGAAAGAGATAACACAGGCCTTTGGGAGAATTGAGCTCAATAATGCATGAGATAATGGTGCTCTGAGGCAGGATTTCAATGGAAGGCTAGGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAGCCCTGTCT-CCAGGTTTACAACT----ATCTGCAGTGTTTGAATAGAGCTCAGGGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCAGGCTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTCAAAATTGTA--AACGAAGAATAAAAGGATATTCTCAAGTTGGGTC--ATGAGG-GAAAAAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52555975 424 + 80997621 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCC-AAGAAAT---GAGAAAGAGATAACACAGGCCTTTGGGAGAATTGAGCTCAATAATGCATGAGATAATGGTGCTCTGAGGCAGGATTTCAATGGAAGGCTAGGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAGCCCTGTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGGGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCAGGCTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTCAAAATTGTA--AACGAAGAATAAAAGGATATTCTCAAGTTGGGTC--ATGAGG-AAAAAAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47601076 424 + 74645514 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAgcc-aagaaat---gaaaaagagataaCACAGGCCTTTGGGAGAATTGAGCTCAATAATGCATGAGATAATGGTGCTCTGAGGCAGGATTTCAATGGAAGGCTAGGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAAcagcccca-ccctcccagccctgTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGGGATCTCTGGGCAGTGACAATGAGTCAGCTGGGCCCATTCAGGCTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTAGGTTGTCAAAATTGTA--AACGAAGAATAAAAGGATATTCTCAAGTTGGgtc--atgagg-aaaaaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9867435 425 - 75148670 TTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCC-AAGAAAT---GAAAAAGAGATAACACAGGCCTTTGGGAGAATTGAGCTCAATAATGCATGAGATAATGGTGCTCTGAGGCAGGATTTCAATGGAAGGCTAGGTGCTGTAACTATGTAACAAAACACCAG----CACA-GGACAAAGAGTAGGTTTCTCAATCAACAAGGATAAACAGCCCCA-CCCTCCCAGCCCTGTCT-CCAGGTTTACAATT----ATCTGCAGTGTTTGAATAGAGCTCAGGGATCTCTGGGCAGTGACAATGAGTCAGCTGGACCCATTCAGGCTGGAAGTTTTATATGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATGTTGTCAAAATTGTA--AACGAAGAATAAAAGGATATTCTCAAGTTGGGTC--ATGAGGAAAAAAAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112712902 422 + 159171411 TTCTCTTTCAAATCCCCATTACCACAATCTCTTTATAGCCTAAGAAAT---AAAAAAGAGATAACCCAGGCCTTTGGGAGAATTGAGCTCAGTAGTGCATTAGATAATGGTGTTCTGAGGCAGGATGTCAATGG-GGGCTAAATGCTGTAACTATGTAACAAAAC-CCAG----CACA-GGACAAAGAGTAGGTTTCTCAGTCAACAAGGATAAACAGCCCCACCCCTCCCAACCCTCTCT-CCAGGTTTACCATT----ATCTGCAGTGTCTGAATAGAGCTCAGGTATCTTAGGGCAGGGACAGTGAGTCAGCTGGGCCCATTCAGGCTGGAAGTTTCATGTGGGTGAAAGTTAAAAATGTTAACTTGTTTCTATTTTGTC-AAATTTTA--AACAAAGAATAAAAGTATATTCTCAAGTTGACTC--ATGAGG--GAAAAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99454783 331 + 122082543 TTCTCTCCCCTTTCCCCATCACTGCAACATCTTTACAGCC-ACGATAT---AACAGCATGAAAATGGA----CCCGGAAGACTCTGAGTCAACAATGCATGAGAAA--------------CAGGAAATCAATGGAAGACCAC------------------------TCAT----CACAGGGACAAA----ATGTTCCTCAATCGAC--GTCTAAACAGCCCCA-CCTTCC-----------------TTCACGGTC----CATTGCTCTGT-----------------GACCATGGGCTGAGCCAGTGAGTCAGCCGG-CCCATTCAGAAT---AGTTTCGTGTGGGTGAAAGTT-TACACATTAACTGCTTTCTTTTCTATCAGAAT-----------ACAGCAGAAGTGTCCTAGCCATATGGCTCAGATTAGA--AATAAA i mm10.chr11 I 13 I 6692 s canFam3.chr9 21792391 417 + 61074082 CTCTCTTTCACTTCCCCATCACCACAATCTCTTTATAGCCCAAGAAATAAAAAAAAAGAGATAACCCAGGCCTTGAGGGGAACTGGGATCAATAATGCATGACATGATGGTGTTTTAAAACTAGATGTCAATGA-AGGCTAAATGCTGGGACTATGTAACAAAATACCATTCACCATG-GGACAAAGAGCAAGTTCCTAAATCAACATGTATAAATAGCCCTA-CCCTCCCAACCATCTCCACCAAGTTTACTATTATTCATCCTCACTGTTTGAACAGTGCTCAGGCCCATCTGGGTGATGCTGGTGAGTCAGCTGGGTCCATCTGTGTTGAAAGTTGTATATGGGTGAAAGTT-AAAATGTTGACTTACTTCTATTTTGTCAGAATTTTAGTAATAAAGTATAATAATAAAT----AAAATGT------------------- i canFam3.chr9 I 4 C 0 a score=303112.000000 s hg38.chr17_JH159146v1_alt 51651 100 + 278131 GAAAGTATATTAGTAGTTTCAGAGCTCAGACCT-GAATCAAATGCCTGAATCAAATCAAAAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTTCTTT- s panTro4.chr17 66171524 100 - 82630442 GAAAGTATATTAGTAGTTTCAGAGCTCAGACCT-GAATCAAATGCCTGAATCAAATCAAAAACTACTCAAAGCTTTGAGACTTAAGAAAGTCACTTTCTTT- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24701299 100 - 73212453 GAAAGTATATTAGTAGTTTCAGAGCTCAGACCT-GAATCAAATGCCTGAATCAAATCAAAAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTTCTTT- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47920407 98 - 81552678 GAAAGTATATTAGTAG-TTCAGAGCTCAGACCT-GAATC-AATGCCTGAATCAAATAAAAAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTTCTTT- i nomLeu3.chr19 C 0 M 1780 s rheMac3.chr16 53033722 97 + 80904711 AAAAAAGTGTTAGTAGTTTTAGAGCTCAGACCT-GAATCAAATGCCTGAATCAGAT---GAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTCCTTT- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52556399 97 + 80997621 AAAAGTGTATTAGTAGTTTTAGAGCTCAGACCT-GAATCAAATGCCTGAATCAGAT---GAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTCCTTT- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47601500 97 + 74645514 aaaagtgtattagtAGTTTTAGAGCTCAGACCT-GAATCAAATGCCTGAATCAGAT---GAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTCCTTT- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9867860 97 - 75148670 AAAAGTGTATTAGTAGTTTTAGAGCTCAGACCT-GAATCAAATGCCTGAATCAGAT---GAACTACTCAAAGCTTTGAGACCTAAGAAAGTCACTTCCTTT- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112713324 90 + 159171411 ACAAGTAT-TTGCTAGTTTTAGAGCTCAGACCT-GAATCAAATGTCTTAG---------AAACGACCCAAAGCTTTGAGACCTAAGAAAGTCACTTCCTTT- i calJac3.chr5 C 0 C 0 s canFam3.chr9 21792808 92 + 61074082 AAAAGTACATTGGTAGTTTTAGTACTCAGGCCCAAAATCAAATGCTTTG----------AGCCAACTCAAAGTTTTGAGACCTAAGAAAGTCATTCAGTTTT i canFam3.chr9 C 0 C 0 e mm10.chr11 99455114 6692 + 122082543 I a score=219236.000000 s hg38.chr17_JH159146v1_alt 51751 92 + 278131 TAATAC-TAATGGACTTGGTATAATTTGTAATGcctgcagctcagagtttaggcggagagtcagccacattggcttcacctgggggctgatta s panTro4.chr17 66171624 92 - 82630442 TAATAC-TAATGGACTTGGTATAATTTGTAATGcctgcagctcagagtttaggcggagagtcagccacattggcttcacctgggggctgatta i panTro4.chr17 C 0 I 6 s ponAbe2.chr17 24701399 92 - 73212453 TAATAC-TAATGGACTTGGTATAATTTGTAATAcctgcaactcagagtttaggcggagagtcagccacattggcttcacctgggggctgatta i ponAbe2.chr17 C 0 I 6 s rheMac3.chr16 53033819 63 + 80904711 CAATAC-TAATGGACTCGGTATCATTTGTAATGCCTGCAACTC--AGTTTAGGCGGAGAGTCAGCC--------------------------- i rheMac3.chr16 C 0 I 1 s macFas5.chr16 52556496 91 + 80997621 CAATAC-TAATGGACTCGGTATCATTTGT-ATGcctgcaactcagagtttaggcggagagtcagccacattggcgtcacctgggggctgatta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47601597 92 + 74645514 CAATAC-TAATGGACTCGGTATCATTTGTAATGCCTGCAACTCAGAGTTTAGGCGGAGAGTCAGCCACATTGGCGTCACCTGGGGGCTGATta i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9867957 92 - 75148670 CAATAC-TAATGGACTCCGTATCATTTGTAATGCCTGCAACTCAGAGTTTAGGCGGAGAGTCAGCCACGTTGGCGTCACCTGGGGGCTGATTA i chlSab2.chr16 C 0 I 79 s calJac3.chr5 112713414 93 + 159171411 TAATACTTAATAGACTTGGTATAACTTGTAACAcctgcaactcagcgtttgggtggagggtcagccacactggcatcacctgggggctgatta i calJac3.chr5 C 0 I 6 s canFam3.chr9 21792900 92 + 61074082 TAATAC-TAATCTACTTGGTACAATTTGTAATGCCTTAAactcagagtttggtccatggatctgcaacattggactcacctgggagctGGata i canFam3.chr9 C 0 T 45580 e mm10.chr11 99455114 6692 + 122082543 I e nomLeu3.chr19 47920505 1780 - 81552678 M a score=5314.000000 s hg38.chr17_JH159146v1_alt 51843 11 + 278131 cagatctcagg s panTro4.chr17 66171722 11 - 82630442 cagatctcagg i panTro4.chr17 I 6 C 0 s ponAbe2.chr17 24701497 11 - 73212453 cagatctcagg i ponAbe2.chr17 I 6 C 0 s macFas5.chr16 52556587 9 + 80997621 --gaCCCCCCC i macFas5.chr16 C 0 I 8 s papAnu2.chr16 47601689 9 + 74645514 --gaccccccc i papAnu2.chr16 C 0 I 12 s calJac3.chr5 112713513 11 + 159171411 cagaccttggg i calJac3.chr5 I 6 C 0 e canFam3.chr9 21792992 45580 + 61074082 T e mm10.chr11 99455114 6692 + 122082543 I e chlSab2.chr16 9868049 79 - 75148670 I e rheMac3.chr16 53033882 1 + 80904711 I e nomLeu3.chr19 47920505 1780 - 81552678 M a score=10178.000000 s hg38.chr17_JH159146v1_alt 51854 6 + 278131 ccaccc s panTro4.chr17 66171733 6 - 82630442 ccaccc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24701508 6 - 73212453 ccaccc i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52556604 6 + 80997621 CCGCCC i macFas5.chr16 I 8 I 11 s papAnu2.chr16 47601710 6 + 74645514 ccgccc i papAnu2.chr16 I 12 I 11 s chlSab2.chr16 9868128 6 - 75148670 cctccc i chlSab2.chr16 I 79 I 9 s calJac3.chr5 112713524 6 + 159171411 ccaccc i calJac3.chr5 C 0 C 0 e canFam3.chr9 21792992 45580 + 61074082 T e mm10.chr11 99455114 6692 + 122082543 I e rheMac3.chr16 53033882 1 + 80904711 I e nomLeu3.chr19 47920505 1780 - 81552678 M a score=3600.000000 s hg38.chr17_JH159146v1_alt 51860 1 + 278131 c s panTro4.chr17 66171739 1 - 82630442 c i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24701514 1 - 73212453 c i ponAbe2.chr17 C 0 I 52 s nomLeu3.chr19 47922289 1 - 81552678 C i nomLeu3.chr19 M 1780 C 0 s rheMac3.chr16 53033883 1 + 80904711 C i rheMac3.chr16 I 1 C 0 s macFas5.chr16 52556621 1 + 80997621 C i macFas5.chr16 I 11 C 0 s papAnu2.chr16 47601727 1 + 74645514 c i papAnu2.chr16 I 11 C 0 s chlSab2.chr16 9868143 1 - 75148670 c i chlSab2.chr16 I 9 C 0 s calJac3.chr5 112713530 1 + 159171411 c i calJac3.chr5 C 0 C 0 e canFam3.chr9 21792992 45580 + 61074082 T e mm10.chr11 99455114 6692 + 122082543 I a score=810987.000000 s hg38.chr17_JH159146v1_alt 51861 362 + 278131 cacaccccacacccatcgccaccactgacctgctgaataaggatctgtattttatcaagatctacaggtgatctgtgtgcctattagagtttaagaagtgctgTAATGTTGCACTCAGCAACTACTTATCTTGGCGGTGGTGGGAAGGGAGGAGGGAAATCTAACCCCTTCACAGGTGCATCAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGCGAGggttctcaaagtgtgggcttcagactggcagcatcagcagcacccaggagcttgtggcagtgcaaattcccaga------ctctgattatctggctcagaaactctgggagtgggaccccacaatctgtggctccatcttagc s panTro4.chr17 66171740 362 - 82630442 caccccccacacccatcgccaccactgacctgctgaataaggatctgtattttatcaagatctacaggtgatctgtgtgcctattagagtttaagaagtgctgTAATGTTGCACTCAGCAGCTACTTATCTTGGCGGTGGTGGGAAGGGAGGAGGGAAATCTAACCCCTTCACAGGTGCATCAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGCGAGggttctcaaagtgtgggcttcagactggcagcatcagcagcacccaggagcttgtggcagtgcaaattcccaga------ctctgattctctggctcagaaactctgggagcgggaccccacaatctgtggctccatcttagc i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47922290 368 - 81552678 CACCCCCCACCCCCATccccactactgacctgctgaataagaatctgtattttatcaagatctacaggtgatctctgtgcctattagagtttaagaagtgctgTAATGTTGCACTCAGCAGCTACTTATCTTGGCGGTGGTGGGAAGGGAGGAGGGAGATCTAACCCCTTCACAGGTGCATCAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGTGAGggttctcaaagtgtgggcttcagactggcagcatcagcagcacccgggagcttgtgggagtgcaaattcccagacttcacctctgattctctggatcagaaactctgggagtgggaccccacaatctgtggctccaccttagc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53033884 362 + 80904711 CACCCCTCCCACCCATccccaccgcggacctgctgaataaggatttgtgttttatcgagatctacaggtgatctgtgtgcctgttagagtttgagaagtgctgTAACGCTGTACTCAGCAGCTACTTATCTTGGCGGTGGGGGGGGGAAA------AAATCTCAGCCCTTCGCAGGTTCATCAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGCGAGggttctcaaagtgtgggtttcagactggcagcatcagcagcacccgggagcttgtggcagggcaaattcccagactccacctctgattctctggatcagaaactctgggagtggggccccagagtctgtggctccatcttagc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52556622 368 + 80997621 CACCCCTCCCACCCATccccaccgcggacctgctgaataaggatttgtgttttatcgagatctacaggtgatctgtgtgcctgttagagtttgagaagtgctgTAACGCTGTACTCAGCAGCTACTTATCTTGGCGGTGGTGGGAGGGGATGAGGGAAATCTCAGCCCTTCGCAGGTGCATCAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGCGAGggttctcaaagtgtgggtttcagactggcagcatcagcagcacccgggagcttgtggcagtgcaaattcccagactccacctctgattctctggatcagaaactctgggagtggggccccagagtctgtggctccatcttagc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47601728 368 + 74645514 cacccctcccacccatccccaccGCGGACCTGCTGAATAAGGATTTGTGTTTTATCGAGATCTACAGGTGATCTGTGTGCCTGTTAGAGTTTGAGAAGTGCTGTAACGCTGTACTCAGCAGCTACTTATCTTGGCGGTGGTGGGAGGGGATGAGGGAAATCTAACCCCTTCGCAGGTGCATTAACTTAGTGCCTAAGACTTCTTGAAGCATTATGGGAAAGCGagggttctcaaagtgtgggtTTCAGACTGGCAGCATCAGCAGCACCCGGGAGCTTGTGGCAGTGCAAATTCCCAGACTCCACCTCTGATTCTCtggatcagaaactctgggagtgggGCCCCAGAGTCTGTGGCTCCATCTTAGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9868144 368 - 75148670 aacccctcccacccatccccaccgcggacctgctgaataaggatctgtgttttattgagatctacaggtgatctgtgtgcctgttagagtttgagaagtgctgTAATGCTGTACTCAGCAGCTACTTACCTTGGCGGTAGTGGGAGGGGATGAGGGAAATGTAACCCCTTTGCAGGTGCATCAACTTAGTGCCTAAGACTTCTTGAAGCGTTATGGGAAGGTGAGggttctcaaagtgtgggtttccgactggcagcatcagcagcacccgggagcttgtggcagtgcaaattcccagactccacctctgattctctggatcagaaactctgggagtggggccccagagtctgtggctccatcttagc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112713531 350 + 159171411 -------cacccccatccccaccactgacctgctaaataaggatcagtggttgatcaagatttccaggtgatctgcgtcctaattggagtttgagaagggctgTTATGCTATAGTCAGCAGCTGCTTATCTTGGCGGTGTTGGGAATTGAGGAGGGAAATCTAA-CCCTTCACAGGTGCATCAACTTAGTACCTACGACTTCTTGAAGCGTTACGAGAAAGTCACggttatcaaagtgtgggcttcagactggcagcatcagcagcagccaggagcttgtggcagtgcaaatccc--gactccacc--------tctggatccgaaactctgggagtgggacccaacaatctgtggctccctcttagc i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24701515 52 - 73212453 I e canFam3.chr9 21792992 45580 + 61074082 T e mm10.chr11 99455114 6692 + 122082543 I a score=18280.000000 s hg38.chr17_JH159146v1_alt 52223 6 + 278131 aagtct s panTro4.chr17 66172102 6 - 82630442 aagtct i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47922658 6 - 81552678 aagtct i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53034246 6 + 80904711 aagtct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52556990 6 + 80997621 aagtct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47602096 6 + 74645514 AAGTCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9868512 6 - 75148670 aagtct i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112713881 6 + 159171411 aagtct i calJac3.chr5 C 0 C 0 s canFam3.chr9 39282593 6 - 61074082 aaatcc i canFam3.chr9 I 3922 C 0 e ponAbe2.chr17 24701515 52 - 73212453 I e mm10.chr11 99455114 6692 + 122082543 I a score=2597599.000000 s hg38.chr17_JH159146v1_alt 52229 830 + 278131 ttccagtgcttcggatgcatggtaaagttggagaaccaTGGCTGTAAAGTATCAGTAGTCGAGGAGCAGGAAGATATTTCCACTGGTTGTACATTTTAGTTTAGAATGCTTGATCTTGTCAAGCGGAGCCCCACATTGAATCACATGTTTCATAAGG-----CAGTAATTCTAACTTTGAAAGAAGTCACGATGCTCT--GACTAAT-----------TTGAAATTTATTTTTATTTCTGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGGTTGAAAAAATAAAGAGTATGACATGATCTGGCAATTATTAACCTGGGGAAGTGAAGAGTGAAAGAAGAAGCAATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCCTAGGGCTCACCAGGAACAGGAAGATGTCGTTTCTTTCTTGCCTCCAAGTGGCAAGCAGGGACTGTGTGTCCTTCATTCATAGCTGCTTGAGAATCAATTACAATAGGTGGGATGCTGTGATAGCCAATAGGGTTCAGAA---ATCAAGACACAGTCCATGATTCCGAGGAGGCGGCAGCCTAGCCGGAGACGGTGACTA----ATCGGGAATTATATAT-------AATGTTCACGAAAAGATTTGTGGATATAGAGGAAGGATCCCCAAGTAAAGCTGGGTGGGAGGGAGTCATTGAAGTTTTCCTGAAA--------------GTGCAGAGTTTGAGGGAGAGTCCAAGCTGGAAAAGCACAGGGACATGGAGG-TGGCCCACGCATCCCTAAAGTGCAGCGATGAGT-------------------------AACTGGTGGATAAGTCACAGCCCATAAATCTCAGAATTC------atccattcactccacaaatatttactcag s panTro4.chr17 66172108 829 - 82630442 ttccggtgcttcggatgcatggtaaagttggagaaccacGGCTGTAAAGTATCAGTAGTCGAGGAGCGGGAAGATATTTCCACTGGTTGTACATTTTAGTTTAGAATGCTTGATCTTGTCAAGCAGAGCCCCACATTGAATCACATGTTTCATAAGG-----CAGTAATTCTAACTTTGAAAGAAGTCACGATGCTCT--GACTAAT-----------TTGATATTTATTTTTATTTCTGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGGTTGAAAAAATAAAGAGTATGACATGATCTGGCAATTATTAACCTGGGGAAGTGAAGAGTGAAAGAAGAAGCGATCGAGCCACATGTCATCTCTGTAAATGGTGAGGTGAC--TCACCCTAGGGCTCACCAGGAACAGGAAGATGTCGTTTCTCTCTTGCCTCCAAGTGGCAAGCAGGGACTGTGTGTCCTTCATTCATAGCTGCTTGAGAATCAATTACAATAGGTGGGATGCTGTGATAGACAATAGGGTTCAGAA---ATCAAGACACAGTCCATGATTCCAAGGAGGCGGCAGCCTAGCTGGAGACGGTGACTA----ATCGGGAATTATATAT-------AATGTTCACGAAAAGATTTGTGGATATAGAGGAAGGATCCCCAAGTAAAGCTGGGTGGG-GGGAGTCATTTAAGTTTTCCTGAAG--------------GTGCAGAGTTTGAGGGAGAGTCCAAGCTGGAAAAGCACAGGGACATGGAGG-TGGCCCACGCATCCCGAAAGTGCAGCGATGAGT-------------------------AACTGGTGGATAAGTCACAGCCCATAAATCTCAGAATTC------atccattcactccacaaatatttactcag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24701567 824 - 73212453 TTCCAGTGCTTCGGATGCATGGCAAAGTTG--AGACCACAGCTGTAAAGTATCAGTAGTCGA-GAGCAGGAAGATATTTCCACTGGTTGTACATTTTAGTTTGGAATGCTTGATCTTGTCAAGCGGAGCCCCACATTGAATCACGTGTTTCTTAAGG-----CAGTAATTCTAACTTTGAAAGAAGTCACGATGCTCT--GACTAAT-----------TTGAAATTTATTTTTATTTCTGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGGTTGAAAAAATAAAGAGTATGAAATGATCTGGCAATTATTAACCTGGGGAAGTGAAGAGTGAAAGAAGAAGCAATTGAGCCACATGTTATCTCTGTAAATGGTG--GTGAC--TCACCCTAGGGCTCACCAGGAACAGGAAGATGTCGTTTCTCTCTTGCCTCCAAGTGGCAAGCAGGGACCGTGTGTCCTTCATTCAGAGCTGCTTGAGAATCAATTACAATAGGT-GGATGCTGTGATAGACAATAGGGTTCAGAA---ATCAAGACACAGTCCATGATGCCAAGGAGGCGGCAGCCTAGTTGGAGAAGGTGACTA----ATCGGGAATTACGTGT-------AATGTTCACGAAAAGATTTGTGGATATAGAGGAAGGATCCCCAAATAAAGCTGGGTGAGAGGGAGTCACTGAAGTTTTCCTGAAG--------------GTGCAGAGTTTGAGGGAGAGTCCAAGCTGGAAAAGCACAGGGACATGGGGG-TGGCCCATGCATCCTGAAAGTGCAGCGATGAGT-------------------------AACTGGTGGATAAGTCACAGCCCATAAATCTCAGAATTC------atccattcactccacaaatatttactcag i ponAbe2.chr17 I 52 C 0 s nomLeu3.chr19 47922664 833 - 81552678 ttccagtgcttcggatgcatggcaaagttggagaaccaTGGCTGTAAAGTATCAGTAGTCGTGGAGCAGGAAGATATTTCCCCTGGTTGTACATTTTAGTTTGGAATGCTTGATCTTGTCAAGCGGATCCCCACATTGAATCACATGTTTCATAAGG-----CAGTAATTTTAACTTTGAAAGAAGTCACGATGCTCT--GACTAAT-----------TTGAAATTTATTTTTATTTCTGAGGGAGATTTGGACATGGAAA-GGAATGGCAATAAGTGAAATGGTTGAAAAAATAAAGAGTATGAAATGATCTGGCAATTATTAACTGGGGGAAGTGAAGAGTGAAAGAAGAAGCAATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCCTAGGGCTCACCAGGAACAGGAAGATGTCGTTTCCCTCTTGCCTCCAAGTGGCAAGCAGGGACCATGTGTCCTTCATTCAGAGCTGCTTGAGAATCAGTTACAGTAGATGGGATGCCGTGATAGACAATAGGGTTCAGAAATCATCAAGACACAGTCCATGATGCCAAGGAGGCGGCAGCCTAGCTGGAGACGGTGACTA----ATTGGGAATTATGTAT-------AATGTTCACAAAAAGATTTGTGGATATAGAGGAAGGATCCCCAAGTAAAGCTGGGTGAGAGGGAGTCGTTGAAGTTTTCCTGAAG--------------GTGCAGAGTTTGAGGGAGAGTCCAAGCTGGAAAAGCGCAGGGACGTGGGGG-CGGCCCACGCATCCCGAAACTGCAGCGATGAGT-------------------------AACTGGCGGATAAGTCACAGCCCATAAATCTCGGAattc------atccattcacttcacaaatatttactcag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53034252 852 + 80904711 ttccagtgcttcggatgcatggcaaagtgggagaaccac-GCTGTAAAGTACCAGTAGTCACAGAGCAGGAAGAGATTTCCACTGGTTGTACATTTTAGTTTGGAATGCGTGATCTTGTCACGCAGAGCCACACATGGAATCGCACGTTTCATAAGG-----CAGTCATTCTAACTTTGAAAGAAGTCACGATGCT------CTCAT-----------TCGAAATTTATTTTTATTTCGGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGACTGGACAAATAAAGAGTATGAAATGATCTGGCAATTATTAACCTGGGGAAGCGAAGAGTGAAAGAAGAAGCCATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCTTAGGGCTCACCGGGAACAGGAAGATGTCCTTTCTCTCTTGCCTCCAAATGGTAAGCAGGGACCGTGTGTTCTTCACTCAGAGCTGCTTGAGAATCAATTACAATAGGTAGGATGCCATGATAGACAACAGTGTTCAGAAATCATCAAGACAGAGTCCATGATGCCAAGGAAGCAGCAGCCTAGTTAGAGAAGGTGACTA----ATCGGGAATTGTGTAT-------AATGTTCATGAAAAGATTTGTGGATATAGAGGAAGGATCCCCGAGTAAAGCTGGGTGAGAGGGAGTCATTGAAGTTTTCT-GAAG--------------GTGCAGAGTTTGAGGGAAAGTCCTAGCTGGAAAAGCACAAGGACATGGGGG-TGGCCCACTCATCCCGAAAGTGCAGCGATGAGTTGTGGTGGTGGGAGGGGATGAGGGAAACTGACAGATAAGTTACAGCCCATACATCTCAGAATTC------atccattcattccacaaatatttactcag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52556996 852 + 80997621 ttccagtgcttcggatgcatggcaaagtgggagaaccac-GCTGTAAAGTACCAGTAGTCACAGAGCAGGAAGAGATTTCCACTGGTTGTACATTTTAGTTTGGAATGCGTGATCTTGTCACGCAGAGCCACACATGGAATCGCACGTTTCATAAGG-----CAGTCATTCTAACTTTGAAAGAAGTCACGATGCT------CTCAT-----------TCGAAATTTATTTTTATTTCGGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGACTGGACAAATAAAGAGTATGAAATGATCTGGCAATTATTAACCTGGGGAAGCGAAGAGTGAAAGAAGAAGCCATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCTTAGGGCTCACCGGGAACAGGAAGATGTCGTTTCTCTCTTGCCTTCAAATGGTAAGCAGGGACCGTGTGTCCTTCACTCAGAGCTGCTTGAGAATCAATTACAATAGGTGGGATGCCATGATAGACAACAGTGTTCAGAAATCATCAAGACACAGTCCATGATGCCAAGGAAGCAGCAGCCTAGTTAGAGAAGGTGACTA----ATCGGGAATTGTGTAT-------AATGTTCATGAAAAGATTTGTGGATATAGAGGAAGGATCCCCGAGTAAAGCTGGGTGAGAGGGAGTCATTGAAGGTTTCT-GAAG--------------GTGCAGAATTTGAGGGAAAGTCCTAGCTGGAAAAGCACAAGGACATGGGGG-TGGCCCACTCATCCCGAAAGTGCAGCGATGAGTTGCGGTGGTGGGAGGGGATGAGGGAAACTGGCAGATAAGTTACAGCCCATACATCTCAGAATTC------atccattcattccacaaatatttactcag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47602102 852 + 74645514 TTCCAGTGCTTCGGATGCATGGCAAAGTGGGAGAACCAC-GCTGTAAAGTACCAGTAGTCACAGAGCAGGAAGAGATTTCCACTGGTTGTGCATTTTAGTTTGGAATGCTTGATCTTGTCACGCGGAGCCACACATGGAATCGCATGTTTCATAAGG-----CAGTCATTCTAACTTTGAAAGAAGTCACGATGCT------CTCAT-----------tcgaaatttatttttatttcagagggAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGACTGGACAAATAAAGAGTATGAAATGATCTGGCAATTATTAACCTGGGGAAACGAAGAGTGAAAGAAGAAGCCATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCTTAGGGCTCACCGGGAACAGGAAGATGTCGTTTCTCTCTTGCCTCCAAATGGTAAGCAGGGACCGTGTGTCCTTCACTCAGAGCTGCTTGAGAATCAATTACAATAGGTGGGATGCCATGATAGACAACAGTGTTCAGAAATCATCAAGACACAGTCCATGATGCCAAGGAAGCAGCAGCCTAGTTAGAGAAGGTGACTA----ATCGGGAATTGTGTAT-------AATGTTCATGAAAAGATTTGTGGATATAGAGGAAGGATCCCTGAGTAAAGCTGGGTGAGAGGGAGTCATTGAAGGTTTCC-GAAG--------------GTGCAGAGTTTGAGGGAAAGTCCTAGCTGGAAAAGCACAAGGACATGGGGG-TGGCCCACTCATCCCGAAAGTGCAGCGATGAGTTGTGGTGGTGGGAGGGGATGAGGGAAACTGGCAGATAAGTTACAGCCCATACATCTCagaattc------atccattcattccacaaatatctaCTCAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9868518 826 - 75148670 ttccagtgcttcggatgcatggcaaagtgggagaaccac-GCTGTAAAGTACCAGTAGT-ACAGAGCAGGAAGAGATTTCCACGGGTTGTACATTTTAGTTTGGAATGCTTGATCTTGTCATGCGGAGCCACACATGGAATCGCATGTTTCATAAGG-----CAGTCATTCTAACTTTGAAAGAAGTCACGATGCT------CTAAT-----------TCGAAATTTATTTTTATTTCAGAGGGAGATTTGGACATGGAAA-GGGATGGCAAGAAGTGAAATGACTGGACAAATAAAGAGTATGAAATGATCTGGCAATTATTAACCTGGGGAAGCGAAGAGTGAAAGAAGAAGCTATCGAGCCACATGTTATCTCTGTAAATGGTGAAGTGAC--TCACCTTAGGGCTCACCGGGAACAGGAAGATGTCATTTCTCTCTTGCCTCCAAATGGTAAGCAGGGACCGTGTGTCCTTCACTCAGAGCTGCTTGAGAATCAATTACAATAGGTGGGATGCCATGATAGACAACAGTGTTCAGAAATCATCAAGACACAGTCCATGATGCCAAGGAAGCGTCAGCCTAGTTAGAGAAGGTGACTA----ATCGGGAACTGTGTAT-------AATGTTCATGAAAAGATTTGTGGATAGAGAGGAAGGATCCCCGAGTAAAGCTGGGTGAGAGGGAGTCATTGAAGGTTTCC-GAAG--------------GTGCAGAGTTTGAGGGAAAGTCCTAGCTGGAAAAGCACAGGGACATGGGGG-TGGCCCACTCATCCCGAAAGTGCAGCAATGAGT-------------------------AACTGGCAGATAAGTTACAGCCCATACATCTCAGAATTC------atccattcattccacaaatatttactcag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112713887 803 + 159171411 -cctggtgattcggatgcagggcaaagttggagagccactgCTGTAAAGTATCAGCGGTCACAGAGCTAGAAGATAC-------GGTTGTACATTTTAGTTTGGAATGCTTTGTCTCGTCAGGCGGAGCCCTGCGTTGAATCCCATGTTTCATAAGG-----CAGTAATTCTAACTTGGAAAGAAGTCGTGATGCTCT--GACTGAT-----------TTGAAATTAATTTCTATTTCTGAAGGAGATTTGGACATGGAAG-GGGATGGCAAGAAGTGAAATGGTTGAAAAAATAAAGAGTATGAAACGAACTGGGATTTATTAACCTGGGGAAGTGAAGAGTGAAAGAAGAAGCAATCAAGCCACCTGTTATCTCTGGAAATGGTGAAGTGAC--TCACCCTAGGGCTCACCAGGAACAGGAAGATGTCGTTTCTCTCTTGCCTCAGAGTGGCAAGGAGAGGCCATGTGTCCTTCATTCAGAGCTGCTTGAGAATCGATTTCAATGGGTGGGATGCCGTGATAG----TGGGGCTCAGAAATCATCAAGAAACGGTCCATGATGCCAAGGAGGTGGCAGTCTAGTCGGAGACTGTGACTC----ACTGTGAATTATGTATTAGAGTAAATGTTCATGAAAAGATTTATGGATATAGAGGAAGGATCCCCACGTAAAGCTGGGTGAGAGGGAGTCATTGAAGTTTTCCTGAAGGTGTTCAGGTGCCAGTGCAGAATTCAAGGGAGAGTGCTAGCTGGAAAAGCACAGGG--------------------------AAAGTGCAGTGATGAGT-------------------------AACTGGCAGGTAAGTCACAGCCCAT--------------------ATCCATTCACTCCACAAATATTTATTCAG i calJac3.chr5 C 0 I 2 s canFam3.chr9 39282599 861 - 61074082 ttcaggtgattctgatgcctggcaaagtttgagaaccactgCTAGAAAGTAATGGTAGTAGTGATGTAGGAAGACCTTTCAAATGGTTGGACATCTTAGTTTTGAATGCTTTGTTTTGTCAAGGACATCCCAATGTTAAATCAGATGTTTCATAAGGCAACACAACAGTTCTAACTTTGAAAGAAACCTTGATACTCTGAGACTTATTTAACTGTTAGTTGAAATTTGTTTTTATTTTTGAGGGAGATTTGAACAAGGAAATTGGATAGAAAGAAATGAAATGATCGAAAACATAAAGTGAATGAAATGTTCTGGAGTTAATGAACCCAGAGGAGTGAGGAGTGGAAGGAAAAGCATTTGATTTCCACTTTATTTCTATAAATAGCTAGACAGCCTTGTCTTTCAGGCTCACCTAGGACAGGAAAGATTTCTTTCACTCTTGCCCCAAAGTCATAAGCAGGG-CCATTTGTTCttcattcagaacttcttgagaatctattacgataggtctggtattgtgacagacagtggggtctggagatgaccaaggacc--tccatgatgccaaagaagctgcagccttgttggagaaagtgattaatacatcagcaattataaatcactttaagtgttaatgaaga-ctgtggggatgctaagtagggattcccaaatgaaactgg-------------atcgaagcttacctggaggtgatcacttgccagtgcagccttcaaccaaccatacaaccaggagaag-----ggatgtgggggatggcCAGTGCATTCTGAAAATGTAATAATGAAT-------------------------GACTTGCGGATAAGTCACA---TATAAATCTGAGCATTCTACATTCTACGTAcattctacgtgtacatcttcag i canFam3.chr9 C 0 C 0 e mm10.chr11 99455114 6692 + 122082543 I a score=255387.000000 s hg38.chr17_JH159146v1_alt 53059 92 + 278131 tacctgctgagggcctggcactgttctaggccatgaggatacttccgtgagcaagacaaacacaaattcctgctgacaaggcttcattctag s panTro4.chr17 66172937 92 - 82630442 tacctgctgagggcctggcactgttctaggccatgaggatacttccgtgagcaagacaaacacaagtccctgctgacaaggcttcattctag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24702391 92 - 73212453 tacctgctgagggcctggcactgttctaggccatgaggatacttccgtgagcaagacaaacacaaattcctgctgacaagccttcattctag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47923497 90 - 81552678 tacctgctgagggcctggcactgttctaggccatgaggatacttccgtgagcaagacaaacacaaattcctgctgacaaggcttcattt--g i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53035104 92 + 80904711 tacctgctgagggcctggcactgttctaggccatgaggatacttccatgagcaagacaaacagaaattcctgctgacaaggcttcattctag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52557848 92 + 80997621 tacctgctgagggcctggcactgttctaggccatgaggatacttccatgagcaagacaaacagaaattcctgctgacaaggcttcattctag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47602954 92 + 74645514 TACCTGCTGAGGgcctggcactgttctaggcCATGAGGATACTTCCATGAGCAAGACAAACAGAAATTCCTGCTGACAAGGCTTCATTCTAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9869344 92 - 75148670 tacctgctgagggcctggcactgttgtaggccctgaggatacttccatgagcaagacaaacagaaattcctgctgacaaggcttcattctag i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39283460 89 - 61074082 tgcctactatgtgc--aacattgctctaggcctcagggatacttcagtaagcaaaacacacaaaaatttctatt-atggagctttatactag i canFam3.chr9 C 0 I 94 e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112714690 2 + 159171411 I a score=85524.000000 s hg38.chr17_JH159146v1_alt 53151 41 + 278131 caaagggatataaaccccatacagataatatatatgtaaat s panTro4.chr17 66173029 41 - 82630442 caaagggatataaaccccatacagataatatatatgtaaat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24702483 37 - 73212453 ca---ggatataaaccccatgcaga-aatatatatgtaaat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47923587 41 - 81552678 cagagggatataaaccccatatagataatatatatgtaaag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53035196 41 + 80904711 cagcgggatataaaccccacatagataatatatatgtaaat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52557940 41 + 80997621 cagcgggatataaaccccacatagataatatatatgtaaat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47603046 41 + 74645514 CAGCGGGATATAAACCCCACatagataatatatatgtaaat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9869436 41 - 75148670 cagtgggatataaacCCCATATGGGTAATGTATATGTAAAT i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39283549 94 - 61074082 I e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112714690 2 + 159171411 I a score=337501.000000 s hg38.chr17_JH159146v1_alt 53192 116 + 278131 tataAGACAATGTGATGTAATCACACTGGAAAGGTAGAGAAATGGCAACCGGAGGTGTGAGATGGTGTAAGAATCCTGTGATGCCATCTTCTACAATGGGGATTTAGGTCTTTAAT s panTro4.chr17 66173070 116 - 82630442 tataAGACAATGTGATGTAATCACACTGGAAAGGTAGAGAAATGGCAACCGGAGGTGTGAGATGGTGTAAGAATCCTGTGATGCCATCTTCTACAATGGGAATTTAGGTCTTTAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24702520 116 - 73212453 tataAGACAATGTGATGTAATCACACTGGAAAGGTAGAGAAATGGCAACCGGAGGTGTGGAATGGTGTAAGAATCCTGTGATGCCATCTTCTACAATGGGAATTTAGGTCTTTAAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47923628 115 - 81552678 tgtaAGACAATGTGATGTAATCACACTGGAAAGGTAGAGAAATGGCAACCGGAGGTGTAGGATGGTGTAAGAATCCTGTGATGCCATCTTCTACAAT-GGAATTTAGGTCTTTAAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53035237 116 + 80904711 tacaAGACAAtgtgatgtaatcacactggaaaggtagagaaatggcaaccggaggtgtgagatggtgtaagaatcctgtaatgccgtcttctacaatgggaatttaggtctttaat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52557981 116 + 80997621 cataAGACAAtgtgatgtaatcacactggaaaggtagagaaatggcaaccggaggtgtgagatggtgtaagaatcctgtaatgccgtcttctacaatgggaatttaggtctttaat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47603087 116 + 74645514 tacaaGACAATGTGATGTAATCACACTGGAAAGGTAGAGAAATGGCAACCGGAGGTGTGAGATGGTGTAAGAATCCTGTAATGCCGTCTTCTACAATGGGAATATAGGTCTTTAAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9869477 116 - 75148670 TACAAGACAAtgtgatgtaatcacactggaaaggtagagaaatggcaaccggaggtgtgagatggtgtaagaatcctgtaatgccatcttctacaatgggaatttaggtctttaat i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39283643 110 - 61074082 TATAAGTTAATGTGATTt------attagaaaggtggataaatgggaacttggggtgtgggctggtataagaatcctgtattgtcattttccacaacaggaatctagatttttaat i canFam3.chr9 I 94 C 0 e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112714690 2 + 159171411 I a score=399.000000 s hg38.chr17_JH159146v1_alt 53308 6 + 278131 GTCttc- s panTro4.chr17 66173186 5 - 82630442 GTCtt-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24702636 5 - 73212453 GTCtt-- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47923743 6 - 81552678 GTCttt- i nomLeu3.chr19 C 0 C 0 s canFam3.chr9 39283753 6 - 61074082 gtctt-a i canFam3.chr9 C 0 I 159 e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112714690 2 + 159171411 I e chlSab2.chr16 9869593 0 - 75148670 C e papAnu2.chr16 47603203 0 + 74645514 C e macFas5.chr16 52558097 0 + 80997621 C e rheMac3.chr16 53035353 0 + 80904711 C a score=112886.000000 s hg38.chr17_JH159146v1_alt 53314 222 + 278131 tttttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcggtggcgtgatctcggctcactgcaagctccacctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccatcacctcgcccggctaatttttttttgtatatttagtagagacggggcttcaccgtgttagccagga s panTro4.chr17 66173191 220 - 82630442 -ttttttttttttttttttttttgtgacagagtctcgctctgtcgcccaggctggagtgcagtggcgtgatctcggctcactgcaagctccacctcgtgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccatcacctcgcccggctaatttttttt-gtatatttagtagagacggggcttcaccgtgttagccagga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24702641 213 - 73212453 -------ttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggtgtgatctcggctcactgcaagctccgcctcctgggttcacgccgttctcctgcctcagcctcccgaatagctgggactacaggtgcccatcacctcgcctggctaattttttt--gtatatttagtagagacggggtttcaccgtgttagccagga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47923749 220 - 81552678 tttttttttttttttttttttttgagatggagtctccctctgttgcccaggctggagtgcagtggcatgatctcagctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggtgcccatcacctcgcctggctaattttttt--gtatatttagtagagacggggtttcaccgtgttagccagga i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 39283759 159 - 61074082 I e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112714690 2 + 159171411 I e chlSab2.chr16 9869593 0 - 75148670 C e papAnu2.chr16 47603203 0 + 74645514 C e macFas5.chr16 52558097 0 + 80997621 C e rheMac3.chr16 53035353 0 + 80904711 C a score=41185.000000 s hg38.chr17_JH159146v1_alt 53536 91 + 278131 tggtctccaactcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcc---cggtcTTtaac s panTro4.chr17 66173411 94 - 82630442 tggtctcgaactcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggcGGTCTTtaat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24702854 94 - 73212453 tggtctcaaactactgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccagcGGTCTTtaat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47923969 94 - 81552678 tggtctcgaactcctgacctcgtgatccgcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggTGGTCTTtaat i nomLeu3.chr19 C 0 C 0 s canFam3.chr9 39283918 40 - 61074082 tgctctcc--cccctg--ctcatgctcactccatctctctctct-------------------------------------------------- i canFam3.chr9 I 159 C 0 e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112714690 2 + 159171411 I e chlSab2.chr16 9869593 0 - 75148670 C e papAnu2.chr16 47603203 0 + 74645514 C e macFas5.chr16 52558097 0 + 80997621 C e rheMac3.chr16 53035353 0 + 80904711 C a score=927384.000000 s hg38.chr17_JH159146v1_alt 53627 348 + 278131 gtcttaagttgataaa---acaagaaat----agcagtgtaagcatattccttagagatatgcaggttaataccagaaacaatagctaaaagatttcagagAGAAACATTCAGGAGTGGGGACACCAGGGGCTGCTATTTTTTACTATGAACCTTGTATAGTATATGATGTATTCATTCATTCACTCACGCattcattcatgaat--tcacaagtctgtgtgaatatcagtgtgtgcaaggttttgttgcagatgctggggatacagtagtt---aaaaaaacacaaacgtttctgccctggcggaacttagattcaggggtgggagctagaggtgaagggagtaggtcagaggagaa----------------aa s panTro4.chr17 66173505 348 - 82630442 gtcttaagttgataaa---ccaagaaat----agcagtgtaagcatattccttagagatatgcaggttaataccagaaacaatagctaaaagatttcagagAGAAACATTCAGGAGTGGGGACACCAGGGGCTGCTACTTTTTACTATGAACCTTTTATAGTATTTGATGTattcattcattcactcacgcattcattcatGAAT--TCACAAGTCTGTGTGAATATCAGTGTGTGCAAGGTTTTGTTGcagatgctggggatacagtagtt---aaaaaaacacaaacgtttctgccctggcggaacttagattcaggggtgggagctagaggtgaagagaGTAGGTCAGAGGAGAA----------------AA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24702948 351 - 73212453 gtcttaagttgataaa---ccaagaaatagcaagcagtgtaagcatattccttagagatatgcaggttaataccagaaacaatagctaaaagatttcagagagaaagattcaggagtggggatgccaggggctgctattttttactatgaaccttgtatagtatttgaTATattcattcattcactcacacattcattcatGAAT--TCACAAGTCTGTGTAAATATCAGTGTGTGCAAGGTTTTGTTGcagatgctggggatacagtagtt----aaaaaacacaaacttttctgccctggtggaacttagattcaggggtaggagctagaggtgaagagaGTAGGTCAGAGGAGAA----------------AA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47924063 351 - 81552678 gtcttaagttgataaa---ccaagaaat----agcagtgtaagcatattccttagagatatgcaggttaataccagaaacaatagctaaaaaatttcagagAGAAAGGTTCAGGAGTGGGGACACCAGGGGCTGCTATTTTTTACTATGAACCTTGTATAGTATTTGATGTATTCATTCATTCACTCACACattcattcatgaat--tcacaagtctgtgtaaatatcggtgtgcgcaaggttttgttgcagatgctggggatacagtagtttttaaaaaaacacaaacctttctgccctggtggaacttagattcaggggtgggagctagaGGTGAAGAGAGTAGGTCAGAGGAGAA----------------AA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53035353 348 + 80904711 gtcttaagttgataga---ccaagaaat----agcagtgtaagcatattccttagagatattcaagttaataccagaaacaaaagctaaaagatttcagagaaaaagattcaggagtggggacaccaggggctgctattttttactatgaaccttgtatagtatttgaTGTattcattcattcactcacacattcattcatGAAT--CCACAAGTCTGTGTAAATATCAGtgtgtgcaaggttctgttgcagatgctggggatacagtagtt---aaaaaaacacaaatgtttctgccctggtggaacttagattcaggggagggagctagaggtgaagagagtaggtcagaggagaa----------------aa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52558097 348 + 80997621 gtcttaagttgataga---ccaagaaat----agcagtgtaagcatattccttagagatattcaagttaataccagaaacaaaagctaaaagatttcagagAAAAAGATTCAGGAGTGGGGACACCAGGGGCTGCTATTTTTTACTATGAACCTTGTATAGTATTTGATGTATTCATTCATTCACTCACACattcattcatgaat--ccacaagtctgtgtaaatatcagtgtgtgcaaggttctgttgcagatgctggggatacagtagtt---aaaaaaacacaaatgtttctgccctggtggaacttagattcaggggagggagctagaggtgaagagagtaggtcagaggagaa----------------aa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47603203 348 + 74645514 GTCTTAAGTTGATAGA---CCAAGAAAT----AGCAGTGTAAGCATATTCCTTAGAGATATTCAAGTTAATACCAGAAACAAAAGCTaaaagatttcagagaaaaagaTTCAGGAGTGGGGACACCAGGGGCTGCTATTTTTTACTGTGAACCTTGTATAGTATttgatgtattcattcattcactcacacattcattcatGAAT--CCACAAGTCTGTGTAAATATCAGTGTGTGCAAGGTTCTGTTGCAGATGCTGGGGATACAAtagtt---aaaaaaacacaaatgtttcTGCCCTGGTGGAACTTAGATTCAGGGGAGGGAGCTAGAGGTGAAGAGAGTAggtcagaggagaa----------------aa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9869593 349 - 75148670 gtcttaagctgataga---ccaagaaat----agcagtgtaagcatattccttagagatattcaagttaataccagaaacaaaagctaaatgatttcagagAAAAAGATTCAGGAGTGGGGACACCAGTGGCTGCTATTTTTTACTATGAACTTTGTATAGTATTTGATGTATTCATTCATTCACTCACACattcattcatgaat--ccacaaatctgtgtaaatatcagtgtgtgcaaggttctgttgcagatgctggggatacagtagtt--aaaaaaaacacaaatgtttctgccctggtggaacttagattcaggggagggagctagacgtgaagagagtaggtcagaggagaa----------------aa i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39283958 312 - 61074082 ------aataaataaaatcataaaaaat----agcagtataaatatgttctttagaaatatacaggttaataccaaaagagatagttaaaagattttgaaaaggaagattcaggagtgaggaagacagagactgctattgtttagtataggccttgtagaa-atttaaTGT-----ttcattcattcattcattcattcaCAAATACTTACAAAAACAT-----TATAAGTGTGTGCCATCCCCTGTTGTG--------------AGCATTT----------------------------TGTGGTATTTAGAATCAGAGGCAGGGACCAGAAG-GAAGAGAACCtgtcagaggatgactggtgctatgggttcaa i canFam3.chr9 C 0 C 0 e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112714690 2 + 159171411 I a score=2773008.000000 s hg38.chr17_JH159146v1_alt 53975 879 + 278131 aggaagggtggggagg-----------------gctgggaaagttgcccttgtgtgtagagagatgagaatgggcctccctgtgagagtggtatttgaatgacagcagga-----------agaaaagagccatatggcagctcaggtgcaaaggtctatagcagtttaggtgtgagtgtgggtggagcagtgg---------ggatgtgggggtgctcagggatggaagg---gagggtggtggaaaggacctcagcaattcggaggtgaatg---gtgagggatgtggatgccatcatccagcaaggaacctgccttttactctgtg--atatgagaagccaccgaactttggcgatggagtaattcctta-tatctttaaaaaga---GGCACAAA------------GACCACACCTCATAAATACTGACATCATATTAACAGAATAGATAATACACCACTTTTTCAAATGTATCTTTTTTTCTTTTAATCGC-TGAGAGGGAAAAGTAGTATCAGTGGCAGcacac---------------------acacacacacacacacacacacacGGAAGAAATGGAAATAAAAGCTAAAGAACAAACTAGTAATGATTCGGAGTGAGACCCCTAACACCTCCCGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCCCAGGCAGAGTCTGAGTAACTGGCGTTGC-CTCTC-TTCATGCATCTACCTGATCCACCTGTCCTTCTACCCACCCCTCTGAT-CCCTAGGAATTCTGAGAGCCTGGTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTCCCCTAGAGGGTAAATGGCAAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGAGCTTGCC-ACAGATGTAAGCAGGAACGCCCGGCTGAAGTGGGAACGAGGCAGAGGCTGGAAGACACAGCAGAGTGC s panTro4.chr17 66173853 886 - 82630442 AGGAAGGGTGGGGAGG-----------------GCTGGGGAAGTTGCCCTTGTGTGTAGAGAGATGAGAATGGGCCTCCCTGTGAGAGTGGTATTTGAATGACAGCAGGA-----------AGAAAAGAGCCATATGGCAGCAcaggtgcaaaggtctatagcagtttaggtgtgagtgtgggtggagcagtgg---------ggatgtgggggtgctcagggatggaagg---gagggtggtggaaaggacctcagcaattcggaggtgaatg---gtgagggatgtggatgccatcatccagcaaggaccctgccttttactctgtg--atatgagaagccaccgaactttggcgatggagtaattcctta-tatctttaaaaaga---GGCACAAA------------GACCACACCTCATAAATGCTGACATCATATTAACAGAATAGATAATACACCACTTTTTCAAATGTATCTTTTTTTCTTTTAATCGC-TGAGAGGGAAAAGTAGTATCAGTGGCAGcacacgcaca---------------cacacacacacacacacacacacacGGAAGAAATGGAAATAAAAGCTAAAGAACAAACTAGTAATGATTCAGAGTGAGACCCCTAACACCTCCCGAATGCGGGCAAGAAGCTCAGGACTCTGGTAGCCCAGGCAGAGTCTGAGTAACTGGCATTGC-CTCTC-TTCATGCATCTACCCGATCCACCTGTCCTTCTACCCACCCCTCTGATTCCCTAGGAATTCTGAGAGCCTGGTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTCCCCTAGAGGGTAAATGGCAAGAGGTGCAGTTTAGGAGGATTCCCAGTCTGGGAGGAGAAGCTAGCTGAGAGCTTGCC-ACAGATGTAAGCAGGAACGCCCGGCTGAAGTGGGAACGAGGCAGAGGCTGGAAGACACAGCAGAGTGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24703299 878 - 73212453 AGGAAGGGTGGGGAGG-----------------GCTGGGGAAGTTGCCTTTGTGTGTAGAGAGATGAGAATGGGCCTCCCTGTGAGAGTGGTATTTGAATGACAGCAGGA-----------AGAAAAGAGCCATATGGCAGCTcaggtgcaaaggtctgtagcagtttaggtgtgagtgtgggtggagcagcag---------ggacgtgggggtgctcagggatggaagg---gagggtggtggaaaggacctcagcaattcggaggtgaatg---gtgagggatgtgggcgccatcatccagcaaggaccatgccttttactctgta--atatgagaagccactgaactttggccatggagtaattcccta-tatctttaaaaaga---GGCACAAA------------GACCACACCTCATAAATACTGACGTTATATTAACAGAATAGATAATACACCACTTTTTCAAATGTATCTCTTTTTCTTTTAATCGC-TGAGAGGGAAAAGTAGTATCAGTGGCAGcacac----a---------------cacacacacacacacacacacacTTGGAAGAAAAGGAAATAAAAGCTAAAGAACAAACTAGTAATGATTTGGAGTGAGACCCCAAATACCTCCCAAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCCCAGGCAGAGTCTGAGTAACTGGCGTTGC-CTCTC-TTCATGCATCTACCCGATCCACCTGTC---CTACCCACCCCTCTGAT-CCCTAGGAATTCTGAGAGCCTGTTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTCCCCTGGAGGGTAAATGGCAAGAGGTGCAGTTTAGAAGAATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGAGCTTGCC-ACAGATGTAAGCAGGAATGCCCAGCTGAAGTGGGAACGAGGCAGAGGCTGGAAGACACAGCAGAGTGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47924414 870 - 81552678 AGGAAGGGTGGGGAGG-----------------GCTGGGGAAGTCGCCCTTGCGTGTAGAGAGATGAGAATGGGCCTCCCTGTGAGAGTGGTATTTGAATGACAGCAGGA-----------AGAAAAGAGCCATATGGCAGCTcaggtgcaaaggtctatagcagtttaggtgtgagtgtgggtggagcagcgg---------ggacgtgggggtgctcagggatggaagg---gagggtggtggaaaggacctcagcaattcggaggtgaatg---gtgagggatgtggatgccatcatccagcaaggaccctgccttttactctgta--atatgagaagccactgaactttggccatggagtaattcccta-tatctttaaaaagGGGCGGCACAAA------------GACCACACATCATAAATACTGACATTATATTAACAGAATAGATAATACACCACTTTTTCAAATGTATCTTTTTTTCTTTTAATCGC-TGAGAGGGAAAAGTAGTATCAGTGGCAGCACGC---------------------------------ACACACACACGCGGAAGAAATGGAAATAAAAGCTAAAGAACAAACTAGTAATGATTCGGAGTGAGACCCCTAACACCTCCTGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCCCAGGTAGAGCCTGAATAACTGGTGTTGC-CTCTC-TTCATGCATCTACCCGATCCACCTGTCCTTCTACCTACCCCTCTGAT-CCCTAGGAATTCTGAGAGCCTGGTATCACCCAGGTACAAG-AAGAAGAAGTCTATTGTTCCCTGCAGGGTAAATGGCAAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGAGCTTGCC-ACAGATGTAAGCAGGAACGCCCAGCTGAAGTGGGAACGAGGCAGAGGCTGGAAGACACAGCAGAGTGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53035701 899 + 80904711 aggaaggctggcggggggcgggggtggggcggtgctggggaagttgcccttgagtgtagagagatgagaatgggcctccctgtgagagtggtatttgaatgacagcagga-----------aggaaagagccatatggcagctcaggtgcaaaggtctacagcagtttaggtgtgagtgtgggtggagcagtgg---------ggacgtgcaggtgctcagggatggaagg---gagcgtggtgaaaaggacctcagcaattcggaggtgaatg---gtgagggatgtggacagcatcatttggcagggactctgccttttactctgtg--atatgggaagccactgaattttggccatggagtaattcccta-tatctttaaaaaga---GGCACAAA------------GACCACACCTCATAAATACTGACATCATATTAACAGAATAGATAATACACCGCTTTTTCAAATGTATC--TTTTTCTTTTAATCGC-TAAGAGGGAAAAGTAGTATCAGTGGCAGCATGcacaca------------acacacacacacacacacacacacacacaGAAGAAATGGAAATAAAAGCTAAAGAACAAACTACTAATGATTCAGAGTGAGACCCCTAACACCTCCCGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCTCAGGCAGAGTCTGAGTAACTGGTGTTAC-CTCTC-TTCATGCATCTACCTGATCCACCTGTC---CTACCCACTCCTCTGAT-CCTTAGGAATTCTGAGAGGCTGGTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTGCCCTGGAGGG-AAATGGCGAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGGGCTTGCC-ACAGATGTAAGCAGGAacacctggctgaagtgggaatgaggcagaggctggaagacacagcagagtgc i rheMac3.chr16 C 0 I 293 s macFas5.chr16 52558445 913 + 80997621 aggaaggctggcggggggcgggggagggGCGGTGCTGGGGAAGTTGCCCTTGAGTGTAGATAGATGAGAATGGGCCTCCCTGTGAGAGTGGTATTTGAATGACAGCAGGA-----------AGGAAAGAGCCATATGGCAGCTCAGGTGCAAAGGTCTACAGCAGTTTAGGTGTGAGTGTGGGTGGAGCAGTGG---------GGACGTGCAGGTGCTCAGGGATGGAAGG---GAGCGTGGTGAAAAGGACCTCAGCAATTCGGAGGTGAATG---GTGAGGGATGTGGACAGCATCATTTGgcagggactctgccttttactctgtg--atatgggaagccactgaattttggccatggagtaattcccta-tatctttaaaaaga---GGCACAAA------------GACCACACCTCATAAATACTGACATCATATTAACAGAATAGATAATACACCGCTTTTTCAAATGTATCTTTTTTTCTTTTAATCGC-TAAGAGGGAAAAGTAGTATCAGTGGCAGCATGcacacaacacacacacacacacacacacacacacacacacacacacaGAAGAAATGGAAATAAAAGCTAAAGAACAAACTACTAATGATTCAGAGTGAGACCCCTAACACCTCCCGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCTCAGGCAGAGTCTGAGTAACTGGTGTTAC-CTCTC-TTCATGCATCTACCTGATCCACCTGTC---CTACCCACTCCTCTGAT-CCTTAGGAATTCTGAGAGGCTGGTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTGCCCTGGAGGG-AAATGGCGAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGGGCTTGCC-ACAGATGTAAGCAGGAACACCTGGCTGAAGTGGGAATGAGGCAGAGGCTGGAAGACACAGCAGAGTgc i macFas5.chr16 C 0 I 293 s papAnu2.chr16 47603551 887 + 74645514 aggaaggctgAGAAGG-----------------GCTGGGGAAGTTGCCCTTGAGTGTAGAGAGATGAGAATGGGCCTCCCTGTGAGGGTGGTATTTGAATGACAGCAGGA-----------AGGAAAGAGCCATATGGCAGCTCAGGTGCAAAGGTCTACAGCAGTTTAGGTGTGAGTGTGGGTGGAGCAGTGG---------GGACGTGCGGGTGCTCA-GGATGGAAGG---GAGGGTGGTGAAAAGGAC--CAGCAATTCGGAGGTGAATG---GTGAGGGATGTGGACAGCATCATTCGGCAGGGACTCTGCCTTTTACTCTGTG--ATATGGGAAGCCACTGAATTTTGGCCATGGAGTAATTCCCTA-TATCTTTAAAAAGA---GGCACAAG------------GACCACACCTCATAAATACTgacatcatattaacagaatagaTAATACACCGCTTTttcaaatgtatctttttttcttttaatcgc-TAAGAGGGAAAAGTAGTATCAGTGGCAgcatgcacaca------acacacacacacacacagacacacacacacacacagaagaaatggaaataaaagctaAAGAACAAACTACTAATGATTCAGAGTGAGACCCCTAATACCTCCCGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCTCAGGCAGAGTCTGAGTAACTGGTGTTAC-CTCTC-TTCGTGCATCTACCTGATCCACCTGTC---CTACCCACTCCTCTGAT-CCTTAGGAATTCTGAGAGGCTGGTATCACCCAGGTACAAG-ATGAAGAAGTCTATTGTCCCCTGGAGGG-AAATGGCGAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGTGCTTGCC-ACAGATGTAAGCAGGAACAGCTGGCTGAAGTGGGaatgaggcagaggctggaagacaCAGCAGAGTGc i papAnu2.chr16 C 0 I 283 s chlSab2.chr16 9869942 895 - 75148670 aggaaggctggcaggg-----gggggggggggtgctggggaagttgcccttgagtgtagagagatgagaatgggcctccctgtgagagtggtatttgaatgacagcagga-----------aggaaagagccatatggcagctcaggtgcaaaggtctacagcagtgtaggtgtgagtgtgggcggagcagtgg---------ggacgtgcaggtgctcagcgatggaagg---gagggnggtgaaaaggacctcagcaattcggaggtgaatg---gtgagggatgtggatggcatcatttggcagggactctgccttttactctgtg--atatgggaagccactgaattttggccatggagtaattcccta-tatctttaaaaaga---GGCACAAA------------GGCCACACCTCATAAATACTGACATCATATTACCAGAATAGGTAATACACCGCTTTTTCAAATGTATCTTTTTTTCTTTTAATTGC-TAAGAGGGAAAAGTAGTATTAGTGGCAGAACGCGCGCG-------------CGCGcacacacacacacacacacacTTGGAAGAAATGGAAATAAAAGCTAAAGAATAAACTACTAATGATTCAGAGTGAGACCCCTAACACCTCCCGAATGGGGGCAAGAAGCTCAGGACTCTGGTAGCCCAGGCAGAGTCTGAGTAACTGGCGTTAC-CTCTC-TTCATGCATCTACCTGATCCACCTGTC---CTACCCACTCTTCTGAT-CCTTAGGAATTCTGAGAGGCTGGTATCACCCAGGTACAAG-ATGAAGAAGTGTATTGTCCCCTGGAGGG-AAATGGCGAGAGGTGCAGTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGTTAGCTGAGGGCTTGCC-ACAGATGTAAGCAGGAACACCTGGCTGAAgtgggaatgaggcagaggctgaaagacacagcagagtgc i chlSab2.chr16 C 0 I 286 s calJac3.chr5 112714692 888 + 159171411 AGGAAGGATGGCGAGG-----------------GCTGGGGAAGGTGCTCTGGTGTGTAGTGAGATAAGAATGGGTCTCCCTGTGAGAGTGGTATTTGAATGACAGCAGGA-----------AGGAAAGAGCCATATGCCAGCACAGGTGCAAAGATCTATAGCAGTTTAGGTGTGAGTGTGGGTGGAGCAGTGG---------GGATGTGGGGGTGCTGAGGGATAGAAGG---GAGCGTGGTGGAAAGGACCTCAGCAATTCAGAGGTGAATG---GGGAGGGGTGCGGACAGCATCATCCAGCAAGGACTCTGGCTTTTACTCTG----ATAGGGGAAACCACTGAACTTTGGCCATGGATCAATTCCCTG-CGTCTTTAAAAAGA---GACAGATGCACCACACCTTTGACCACACCTCATAAATACTGACTTTATGTTAACAGAATAGATGACACACCGCTTTTTCAAATATATCTTTTTAAATTTTAATCAC-TGAGAGGGACAAGTAGTATCAGTGGCAacacacacaca---------cacacacacacacacacacacacacgcacTTGGAAGAAATGGAAAT-AAATCTAAAGAGCAAACTAGTAATGATTCAGAGTGGGACCCCTAATACCTCCTGAATGGGGGCAAGAAGCTCAGGATTCTGGTAGCCCAGGCACAGTCTGAGTAACTGGCACTGCTTTCTC-TTCATGC---------ATCCACCTGTACTTCCACCCACCCCT-TGAT-CCTTAGGAATTCTGAGAGCCTGGTATCACCCTGGTAGAA--ATGAAGAAGTCTGTTGACCCCTGGAAGGTAAACAGTGAGAGGAGT-GTTTAGGAGGATTCTCAGTCTGGGAGGAGAAGCTAGCTGAGGGTTTGCC-ACAGATGTAAGCAGGAACACTCTGCTGAAGTGGGAACTAGGCAGAGGCTGAAAGAGACAACAGTGTG- i calJac3.chr5 I 2 C 0 s canFam3.chr9 39284270 809 - 61074082 atgtaggggcctgggg-------------ttgttctggagagagtgtgcttgtgtatggagtaattaagactggcctcactgtga--atgacatttgaatgaaaatgagaagtttggtgagagggaagaact--------------gtgtagaaatctggagcag-ggaacttccagtgtgggtagaacagtggcccctcacaacccaagctgatgctaagaggtggaaaggtcgagaccaatgggaa------cagaga-ccagaggttaatgtctatggtgtgcaaggaaggcattgtccttcaaggactctggcttttattctgtgtaatacaggcagccagtgaactttgcctgtggagtaataccctattgtctttaaaaaga---GACTTATA------------GACCTCACTCTATAAATATTGATTTTAAATGAACAGAATTGACCATATGCCACTTTTTC----------------TTTACAATCATATGAGAGGGGAAAGTATTATCAGTGGTAACACAC---------------------ACACACAGATTTGAATGCA-------AAGAAATGAAAAT-AAAGCTACAGAACAAACTAGTAATGATTCAGAGCAAGACCCCTAATACCTCCCAAATG-GGGCCAGAATCTTAGCATTCTGATAACACAGGCAGAGTCTGAGTAACTGGAGTTGc-ctttcattcatgcacccaccccatccatccatcctttcttccatccatcTGAT-CATTAGGAATTCTGAGAGCCTCGTGTCATCCAGGCACAAATGTGAGTAAGCATGTTCTCGCC----------------------------------------------------------TAGCTTAGGGCTTGCAGGTGGATGCATATGGAAGCACCTGGAGAAAGTGGCACATAGACGGTATCTGGCCCAGACAGTGGAATAT i canFam3.chr9 C 0 C 0 e mm10.chr11 99455114 6692 + 122082543 I a score=9184.000000 s hg38.chr17_JH159146v1_alt 54854 3 + 278131 TGT s panTro4.chr17 66174739 3 - 82630442 TGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24704177 3 - 73212453 TGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47925284 3 - 81552678 TGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27867880 3 - 80904711 TGT i rheMac3.chr16 n 293 C 0 s macFas5.chr16 28438032 3 - 80997621 TGT i macFas5.chr16 n 293 C 0 s chlSab2.chr16 65277602 3 + 75148670 TGT i chlSab2.chr16 n 286 C 0 s calJac3.chr5 112715580 2 + 159171411 -GT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39285079 3 - 61074082 TGT i canFam3.chr9 C 0 C 0 e mm10.chr11 99455114 6692 + 122082543 I e papAnu2.chr16 47604438 283 + 74645514 I a score=268297.000000 s hg38.chr17_JH159146v1_alt 54857 75 + 278131 GCAACAGATGCCGCCTGGCAGACATGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA s panTro4.chr17 66174742 75 - 82630442 GCAACAGATGCCGCCTGGCAGACGTGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCATA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24704180 75 - 73212453 GCAACAGATGCCGCCTGGCAGACACGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47925287 75 - 81552678 GCAATAGATGCCGCCTGGCAGACACGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27867883 75 - 80904711 GCAACAGATGCCACCTGGCAGACACGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 28438035 75 - 80997621 GCAACAGATGCCACCTGGCAGACACGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 27040848 75 - 74645514 GCAACAGATGCCACCTGGCAGACACAGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA i papAnu2.chr16 n 283 C 0 s chlSab2.chr16 65277605 75 + 75148670 GCAACAGATGCCACCTGGCAGACACGGTGCTCTCATCACAAGAGACTGTTATTTGGTACTGA---AGTAGCCTTCACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112715582 75 + 159171411 GCCACCTATGCCATCTGGCAGACATGGTGCTCTCATCACAAGATGTGGTCATTTGGCACTGA---AGTTGCTTTCATA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39285082 78 - 61074082 GCAGCAGGCACCATCGGGCAGAGATGGTATTTTCATCACAACAGATTGTTATGTGGTACTGAAGCAGCAGCTTTCACA i canFam3.chr9 C 0 C 0 e mm10.chr11 99455114 6692 + 122082543 I a score=16111.000000 s hg38.chr17_JH159146v1_alt 54932 6 + 278131 TTCCAT s panTro4.chr17 66174817 6 - 82630442 TTCCAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24704255 6 - 73212453 TTCCAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47925362 6 - 81552678 TTCCAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27867958 6 - 80904711 TTCCGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 28438110 6 - 80997621 TTCCGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 27040923 6 - 74645514 TTCCGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65277680 6 + 75148670 TTCCAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112715657 6 + 159171411 TTCTAT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39285160 0 - 61074082 C e mm10.chr11 99455114 6692 + 122082543 I a score=364097.000000 s hg38.chr17_JH159146v1_alt 54938 149 + 278131 AGAAAAATGTCTTTCTAttttttatattatactttaagttctggggtacaggtgcagaacatccaggtttgttacataggtattgatgcgccatggtggtttgctgcacgcatcagcctgtcatctacattagatatttgtcctaatgc s panTro4.chr17 66174823 149 - 82630442 AGAAAAATGTCTTTCTAttttttatattatactttaagttctggggtacaggtgcagaacatgcaggtttgttacataggtatagatgcgctatggtggtttgctgcatgcatcagcctgtcatctacattagatatttgtcctaatgc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24704261 149 - 73212453 AGAAAAATGTCCTTCTAttttttatattatactttaagttctggggtacaggtgcagaacttgcaggtttgttacataggtatagatgcgccatggtggtttgctgcacccatcagcctgtcatctacattagatatttgtcctaatgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47925368 149 - 81552678 AGAAAAATGTCTTTCTAttttttatattatactttaagttctggggtacaggtgcagaacatgcaggtttgttacattggtatagatgtgccatggtggtttgctgcacccatcagcctgtcatctacattagatttttgtcccaatgc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27867964 149 - 80904711 AGAAAAATGTCTTTCTAttttttatattatactttaagttctggggtacaggtgcagaatgtgcaggtttgttacataggtatagatgtgccatggtggtttgctgcacccatcaacccatcatctacattagatatttgtcctaatgc i rheMac3.chr16 C 0 n 0 s macFas5.chr16 28438116 149 - 80997621 AGAAAAATGTCTTTCTAttttttatattatactttaagttctggggtacaggtgcagaatgtgcaggtttgttacataggtatagatgtgccatggtggtttgctgcacccatcaacccatcatctacattagatatttgtcctaatgc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 27040929 149 - 74645514 AGAAAaatgtctttctattttttatattatactttaagttctggggtacaggtgcagaatgtgcaggtttgttacataggtatagatgtgccatggtggtttgctgcacccatcaacccatcatctacattagatatttgtcctaacgC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65277686 149 + 75148670 AGAAAAATGTCtttctatttttcatactatactttaagttctggggtacaggtgcagaatgtgcaggtttgttacataggtatagatgtgccatggtggtttgctgcacccatcaacccatcacctacattagatatttgtcctaatgc i chlSab2.chr16 C 0 n 0 e canFam3.chr9 39285160 0 - 61074082 C e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112715663 0 + 159171411 C a score=2893.000000 s hg38.chr17_JH159146v1_alt 55087 4 + 278131 tctc s panTro4.chr17 66174972 4 - 82630442 tgtc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24704410 4 - 73212453 tctc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47925517 4 - 81552678 tctc i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 28438265 4 - 80997621 ACTC i macFas5.chr16 C 0 T 42294 s papAnu2.chr16 27041078 4 - 74645514 ACTC i papAnu2.chr16 C 0 T 41828 e canFam3.chr9 39285160 0 - 61074082 C e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112715663 0 + 159171411 C e chlSab2.chr16 65277835 0 + 75148670 I e rheMac3.chr16 27868113 0 - 80904711 I a score=85122.000000 s hg38.chr17_JH159146v1_alt 55091 169 + 278131 ctcccacagccctccacgccccgacagtccccagtatgtgatgcgcctcccacccccc-gtgtccatgtgttctcactgttcaaccccaacttatgagagagaacacacggtgtctggttttctgtccttgtgttagtttgctgagaatgatgctttccagcatcatcta s panTro4.chr17 66174976 170 - 82630442 ctcccacagccctccaccccccgacagtccccagtatgtgatgcgcctcccacccccccgtgtccgtgtgttctcactgttcaaccccaacttatgagagagaacacatggtgtctggttttctgtccttgtgttagtttgctgagaatgatgctttccagcatcatcta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24704414 169 - 73212453 ctcccacagccgtccaccccccgacaggccccagtgtgtgatgcacctcccacccccc-gtgtccatgtgttctcactgttcaacccccacttatgagagagaacacgcggtgtctggttttctgttcttgtgttagtttgctgagaatgatgctttccagcgtcatcca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47925521 170 - 81552678 ttcccacagccttccaccccccaacaggccccagtgtgtgatgtgcctcccagccccccgtgtccatgtgttctcactgttcaacccccacttatgagagagaacacgtggtgtttcgttttctgcccttgtgttagtttgttgagaatgatgctttccagcatcatcca i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 39285160 0 - 61074082 C e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112715663 0 + 159171411 C e chlSab2.chr16 65277835 0 + 75148670 I e papAnu2.chr16 27041082 41828 - 74645514 T e macFas5.chr16 28438269 42294 - 80997621 T e rheMac3.chr16 27868113 0 - 80904711 I a score=783390.000000 s hg38.chr17_JH159146v1_alt 55260 323 + 278131 tgtccctgcaaaggacatgaactcatccttttttatgacggcatagtattccattgtgtatctgtgccacattttctttatctggtctatcattgatgggcaattgggttggttccaagtctttgttattgtgaacagtgctgcaataaacatatgtctgcatatgtctttatagcagaatgatttataatcctttgagtatatacctagtaatgggattgctgagtcaaatggtatttctggttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtataaaagcg s panTro4.chr17 66175146 323 - 82630442 tgtccctgcaaaggacatgaactcatccttttttatgatggcatagtattccattgtgtatctgtgccacattttctttatctggtctatcattgatgggcaattgggttggttccaagtctttgttattgtgaacagtgctgcaataaacatatgtctgcatgtgtctttatagcagaatgatttataatcctttgagtatatacctagtaatgggattgctgagtcaaatggtatttctggttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtataaaagcg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24704583 323 - 73212453 tgtccctgcaaaggacatgaactcatcctgttttatgactgcatagtattccatggtgtatctgtgccacattttctttatctggcctatcattgatgggcaattgggttggttccaagtctttgttattgtgaacagtgccgcaataaacatacgtgtgcatgtgtctttatagcagaatgatttataatcctttgagtatatacctagtaatgggattgctgagtcaaatggtatttctagttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagcg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47925691 320 - 81552678 tgtccctgcaaaggacatgaactcatccttttttatgactgcatagtattccatggtgtatctgcaccacattttctttatctggtctatcattgatgggcaattgggttggttccaagtct---ttattgtgaacagtgccgcaataaacatatgtgtgcatgtgtctttatagcagaatgatttataatcctttgagtatatacctagtaatgggattgctgagtcaaatggtatttctagttgtagatctttgaggaattgccacactgtcttccacaatggttgaactaatttatactcccaccaacagtgttaaagtg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53036893 323 + 80904711 tgtccctgcaaaggacacaaacttgtctttttttatggctgcgtagtattccatggtgtatctgtgccacattttctttatccagtctatcattgatgggcaactgggttggttccaagtctttgttattgtgaacagtgccgcaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcatttgagtatatacctagtaatgggatggctgggtcaaatggtatttctagttgtagatcttggaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagca i rheMac3.chr16 I 293 C 0 s macFas5.chr16 52559651 323 + 80997621 tgtccctgcaaaggacacaaacttgtctttttttatggctgcgtagtattccatggtgtatctgtgccacattttctttatccagtctatcattgatgggcaactgggttggttccaagtctttgttattgtgaacagtgccgcaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcctttgagtatatacctagtaatgggatggctgggtcaaatggtatttctagttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttatactcccaccaacagtgtaaaagca i macFas5.chr16 I 293 C 0 s papAnu2.chr16 47604721 323 + 74645514 tgtccctgcaaaggacacaaacttgtccttttttatggctgcgtagtattccatggtgtctgtgtgccacattttctttatccagtctatcattgatgggcaactgggttggttccaagcctttgttattgtgaacagtgcctcaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcctttgagtatatacctagtaatgggatggctgggtcaaatggtatttctagttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagca i papAnu2.chr16 I 283 C 0 s chlSab2.chr16 9871123 323 - 75148670 tgtccctgcaaaggacacaaacttgtccttttttatggctgcgtagtattccatggtgaatctgtgccacattttctttatccagtttatcattgatgggcaactgggttggttccaagtctttgttattgtgaacagtgctgcaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcctttgagtatatacctagtaatgggatggctgggccaaatggtatttctagttgtagatctttgaggaatcgccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagca i chlSab2.chr16 I 286 C 0 e canFam3.chr9 39285160 0 - 61074082 C e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112715663 0 + 159171411 C a score=16792.000000 s hg38.chr17_JH159146v1_alt 55583 6 + 278131 ttccta s panTro4.chr17 66175469 6 - 82630442 ttccta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24704906 6 - 73212453 ttccta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47926011 6 - 81552678 ttccta i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53037216 6 + 80904711 ttccta i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52559974 6 + 80997621 ttccta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47605044 6 + 74645514 ttccta i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9871446 6 - 75148670 ttccta i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39285160 6 - 61074082 TTGCTT i canFam3.chr9 C 0 C 0 e mm10.chr11 99455114 6692 + 122082543 I e calJac3.chr5 112715663 0 + 159171411 C a score=71015.000000 s hg38.chr17_JH159146v1_alt 55589 24 + 278131 AGAAAAATGCCTTTCAATCCTTTA---------- s panTro4.chr17 66175475 24 - 82630442 AGAAAAATGCCTTTCAATCCTTTA---------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24704912 22 - 73212453 A-AAAAATGCCTTTC-ATCCTTTA---------- i ponAbe2.chr17 C 0 I 326 s nomLeu3.chr19 47926017 24 - 81552678 AGAAAAATGCCTTTCAATCCTTTA---------- i nomLeu3.chr19 C 0 I 1 s rheMac3.chr16 53037222 24 + 80904711 AGAAAAATGCCTTTCAATCCTTTA---------- i rheMac3.chr16 C 0 I 1 s macFas5.chr16 52559980 24 + 80997621 AGAAAAATGCCTTTCAATCCTTTA---------- i macFas5.chr16 C 0 I 1 s papAnu2.chr16 47605050 24 + 74645514 agAAAAATGCCTTTCAATCCTTTA---------- i papAnu2.chr16 C 0 I 1 s chlSab2.chr16 9871452 24 - 75148670 AGAAAAATGCCTTTCAATCCTTTA---------- i chlSab2.chr16 C 0 I 1 s calJac3.chr5 112715663 24 + 159171411 AGAAAAACGCCTTTCAATCCATTA---------- i calJac3.chr5 C 0 I 1 s canFam3.chr9 39285166 34 - 61074082 CGAAATATGCCTTCCAAGCTATTTCACAGCTTTG i canFam3.chr9 C 0 C 0 e mm10.chr11 99455114 6692 + 122082543 I a score=247891.000000 s hg38.chr17_JH159146v1_alt 55613 74 + 278131 -CCTTA-TTCCATGATCAC----CAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATTCCAAGAC-AGGTTCATG s panTro4.chr17 66175499 74 - 82630442 -CCTTA-TTCCATGATCAC----CAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATTCCAAGAC-AGGTGCATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24705260 74 - 73212453 -CCTTA-TTCCATGATAAC----CAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATCCCAAGAC-GGGTGCATG i ponAbe2.chr17 I 326 C 0 s nomLeu3.chr19 47926042 74 - 81552678 -CCTTA-TTCCATGATCAC----CAATTTTCTGAAACCTAATTCGGTGTGCAGGCACATTGATCCCAAGAC-AGGTGCATG i nomLeu3.chr19 I 1 C 0 s rheMac3.chr16 53037247 78 + 80904711 -CCTCA-TTTCGCGATCACCAAACAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATCCCAAGAC-AGGTGCATG i rheMac3.chr16 I 1 C 0 s macFas5.chr16 52560005 78 + 80997621 -CCTCA-TTTCGCGATCACCAAACAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATCCCAAGAC-AGGTGCATG i macFas5.chr16 I 1 C 0 s papAnu2.chr16 47605075 78 + 74645514 -CCTCA-TTTCGCGATCACCAAACAATTTTCTGATACCTAATTCAGTGTGCAGGCACATTGATCCCAAGAC-AGGTGCATG i papAnu2.chr16 I 1 C 0 s chlSab2.chr16 9871477 78 - 75148670 -CTTTA-TTTCGTGATCACCAAACAATTTTCTGGTACCTAATTCAGTGTGCAGGCACATTGATCCCAAGAC-AGGTGCATG i chlSab2.chr16 I 1 C 0 s calJac3.chr5 112715688 77 + 159171411 -CCGTA-CTCCATGATCACCAAATGATTTTCTGATACCTAATTCACTGCGCAGGCACATTGAT-CCAGGAC-AGGTGCACG i calJac3.chr5 I 1 C 0 s canFam3.chr9 39285200 81 - 61074082 CCATTATTTCCATGATCACCAAGCAATTTTCTGATATCTAATTTCGTTTGCAGGCACATTGATCATGAGACAAGGTGCACA i canFam3.chr9 C 0 C 0 e mm10.chr11 99455114 6692 + 122082543 I a score=1191874.000000 s hg38.chr17_JH159146v1_alt 55687 366 + 278131 GTATAATG----GCAAAACAACAGCAAGACAACTTCCATTGTAAATGAACGGGG-GCTTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAGCTCCTGACCAACCTTG-GTAAA---ATAAAATTTCTAAAC-------CTTGAAGCTTGAGGACTGGACCTTTACCAACAAATGTGTGTTGAA-GAGTGAGCATGGGAGGTGCAGTGAGTGTAGGG-GCTCACCTGGAAATACTCCGCTCCTCCTAAGCATTGC--------------------------------TCCAGCGTGGCACCCACAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCATCA--GGGTGTCCCATGAAATGCTGCATCCGAAGCATGGGCCAAAATAT-CTAG-ACCTCAATGAAGAG--CTATAAAGGGG s panTro4.chr17 66175573 366 - 82630442 GTATAATG----GCAAAACAACAGCAAGACAACTTCCATTGTAAATGAACGGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAGCTCCTGACCAACCTTG-GTAAA---ATAAAATTTCCTAAC-------CTTGAAGCTTGAGGACTGGACCTTTACCAACAAATGTGTGTTGAA-GAGTGAGCATGGGAGGTGCAGTGAGTGTAGGG-GCTCACCTGGAAATACTCCGCTCCTCCTAAGCATTGC--------------------------------TCCAGCGTGGCACCCGCAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCCGAAGCATGGGCCAAAATAT-CTAG-ACCTCAATGAAGAG--CTATAAAGGGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24705334 366 - 73212453 GTATAATG----GCAAAACAACAGAAAGACAACTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAGCTCCTGACCAACCTTG-GTAAA---ATAAAATTTCTGAAC-------CTTGAAGCTTGAGGACTGGACCTTTACCAACAAATGTGTGTCGAA-GAGTGAGCATGGGAGGTGCAGTGAGTGTAGGG-GCTCACCTGGAAATACTCCGCTCCTCCTAAGCATTGC--------------------------------TCCAGCGTGGCACCTGCAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCCGAAGCATGGGCCAAAATAT-CTAG-ACCTCAATAAAGAG--CTATAAAGGGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47926116 365 - 81552678 GTACAATG----GCAAAACAACAACAAGACAACTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAGCTCCTGACCAACGTTG-GTAAA---ATAAAATTTCTGAAC-------CTTGAAGATTGAGGACTGGACCTTTGCCAACAAATTTGTGTTGAA-GAGTGAGCATGGGAGGTGCAGTGAGTGTAGGG-GCTCACCTGGAAATACTCTGCTCCTCCTAAGCATTGC--------------------------------TCCAGCGTGGCACCTGCAGCCACAGAAGGAAGCACAGCACCGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCC-AAACCTGGGCCAAAATAT-CTAG-ACCTCAATAAAGAG--CTGTGAAGGGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53037325 363 + 80904711 GTATAATG----GCAAAACAAC---AAGACAACTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAACTCCTGACCAACCTTG-GTAAA---ATAAAATTTCTGAAC-------CTTGAAGCTTGAGGACTGTACCTTTGCCAACAAATGTGTGTTGAA-GAGTGAGCATGGGAGGGGCAGTGAGTGTAGGG-GCTCAGGTGGAAATACTCCGCTTCTCCTATGCATTGC--------------------------------TCCAGTGTGGCGCCTGCAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCCGAAGGATGGGCCAAAATAT-CTTG-GCTTCAATAAAGAG--CTGTAAAGGGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52560083 363 + 80997621 GTATAATG----GCAAAACAAC---AAGACAACTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAACTCCTGACCAACCTTG-GTAAA---ATAAAATTTCTGAAC-------CTTGAAGCTTGAGGACTGGACCTTTGCCAACAAATGTGTGTTGAA-GAGTGAGCATGGGAGGGGCAGTGAGTGTAGGG-GCTCAGGTGGAAATACTCCGCTTCTCCTATGCATTGC--------------------------------TCCAGCGTGGCGCCTGCAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCCGAAGGATGGGCCAAAATAT-CTTG-GCTTCAATAAAGAG--CTGTAAAGGGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47605153 365 + 74645514 GTATAATG----GCAAAACAAC---AAGACAACTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAACTCCTGACCaaccttg-gtaaa---ataaaatttctgaac-------cTTGAAGCTTGAGGACTGGACCTTTGCCAACAAATGTGTGTTGAA-GAGTGGGCATGGGAGGGGCAGTGAGTGTAGGG-GCTCAGGTGGAAATACTCCGCTTCTCCTATGCATTGC--------------------------------TCCAGCGTGGTGCCTGCAGCCACAGAAGGAAGCACAGCACGGGAG-ATCCAGCATTGGATCTCCCATGAAATGCTGCATCCGAAGGATGGGCCAAAATAT-CTTG-GCTTCAATAAAGAG--CTGTAAAGGGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9871555 358 - 75148670 GTATAATG----GCAAAACAAC---AAGACAGCTTCCATTGTAAATGAACAGGG-GCCTCTTGTTCCTTGGGTTTAGCTGGCTCCAT-TCCCTTAACTCCTGACCAACCTTG-GTAAA---ATAAAATTTCTGAAC-------CTTGAAGCTTGAGGACTGGACCTTTGCCAACAAATGTGTGTTGAA-GAGTGAGCACGGGAGGTGCAGTG-----AGGG-GCTCAGGTGGAAATACTCCGCTTCTCCTACGCATTGC--------------------------------TCCAGCGTGGCGCCTGCAGCCACAGAAGGAAGCACAGCACAGGAG-ATCCAGCA--GGGTGTCCCATGAAATGCTGCATCCAAAAGATGGGCCAAAATAT-CTAG-ACCTCAATAAAGAG--CTGTAAAGGGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112715765 360 + 159171411 GTATAATT----TCAAAACAGC---AAGACAGCTTCCATTG----------GGG-GTCTCTTGTTTCTTGGGTATAGCTGGCTCCAT-TCCCTTAGCTCCTGACCAACCTTG-ATAAA---ATACAATTTCTGAATTCCTGAACTTGAGGCTTGAGGACTGGACCTTTGCTGACAAATGTGTGTTGAA-GAGTGAGCGTGGGAGGTGCAGTGGGTGTAGGG-GCTCACCTGGAAATCCTCCGCTCCTGTGGGGCACTGC--------------------------------TCTGGCGTGCCACCTGCAGCCACAGAAGGAAGCAC-GCACAGGAG-ATCCAGCA--GCATGTCCCATGAAACGCTGCATCTGAAGGATAGACTAGGATAT-TTAGAACCTCAATAAAGAG--CTGTAAAGGGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99461806 320 + 122082543 GTGTGATGGATAGCAACATAAT---GAGAT-GCTTCCCCTGTGAATGAGCAGGG-GCCTCTTATTCATGGGGTTTACCCGGCTTCACGTTCCTCAGCTCCTGTTC--------------------------------------CAGGAGGCTGGAGGG-TGGACCTTTGCC--CACATGCGAGTTGACTGAGTAAGGGTATAAAGTCCA-----------A-GTGCATTGGGGGAGGTCCCTCCCGTCTTACACCCTGA---------------------------------CAAATGGAACAGCAACAGTCTCCAAAGGAACTTCCCAAGGGTGG-ATCCATCT-------CATAATTACAGGCT--AGCTGCAGAATGGGTCAGTG-GT-CTAC-ATTTCAATAAAGGAGCCTGTAGGAGGG i mm10.chr11 I 6692 I 985 s canFam3.chr9 39285281 402 - 61074082 GGATAGTG----GTAAAACATC---AACAGCACTCTCATTGTAAATGAACAGAGCTTCTCCTGTTAATGGAGTTTATGTGATTCCAT-TCCCTGAGCTCCTTATCAACCTTGAATGGACTGATAAAATTTCTGAAC-------CTTGAAGTTTGAGGAATGGATCTTTGCCAACAAACGTGCTTTGAATGGCTAAGTGTCTAAAGTGCAGGGGCTCTGGAATGCTCCTCCAGAAATATCCCGTCTGTCTTCCCCACTGTGAGTACAAATGTACAAGTGGATACCTGCAGCTGCAAATGTGATGCTGACAGTCACATAAGGA--CACAGCACAATAATAACCAGTG--CTATATCCCACAAAATGGCCTATCTGAAGAAAAGGCTAAAATATCCCAA-ACTTCAACATAGAG--CTATGCAGAGA i canFam3.chr9 C 0 C 0 a score=470896.000000 s hg38.chr17_JH159146v1_alt 56053 151 + 278131 -----TGTTAGG---GGATACAGCATCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGTGAATGCATGGATGAACAGGAGGAGTCCAAATTATCTGTTTTAAAGAGGAAGACATTTCTTTGTGTTTTT-------AATCCTTCTTGTTTTTATGGTGTCTACT s panTro4.chr17 66175939 151 - 82630442 -----TGTTAGG---GGATACAGCGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGTGAATGCATGGATGAACAGGAGGAGTCCAAATTATCTGTTTTAAAGAGGAAGACATTTCTTTGTGTTTTT-------AATCCTTCTTGTTTTTATGGTGTCTACT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24705700 151 - 73212453 -----TGTTAGG---GGATACAGCGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTACTAAGTGAATGCATGGATGAACAGGAGGAGTCCAATTTATCTGTTTTAAAGAGGAAGACATTTCTTTGTGTTTTA-------AATCCTTCTTGTTTTTATGGTGTCTACT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47926481 151 - 81552678 -----TGTTGGG---AGATACAGCGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGTGAATGCATGGATGAACAGGAGGAGTCCAATTTATCTGTTTTAAAGAGGAAGACATTTCTTAGTGTTTTT-------AATCCTTCTTGTTTTTATGGTGTCTACT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53037688 151 + 80904711 -----TGTTAAG---GGATACAGTGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGCGAATGCATGGATGAACAGGAGGAGTCCAATTTATCTGTTTTAAAGAGGAAGACATTTCTTTGTGTTTTT-------AATCTTTCTTGTTTTTATGGTGTCTACT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52560446 151 + 80997621 -----TGTTAAG---GGATACAGTGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGCGAATGCATGGATGAACAGGAGGAGTCCAATTTATCTGTTTTAAAGAGGAAGACATTTCTTTGTGTTTTT-------AATCTTTCTTGTTTTTATGGTGTCTACT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47605518 151 + 74645514 -----TGTTAAG---GGATACAGTGTCTAACATAGAAA----------------GCACGCTGTCCATGGTTATTAAGCGAATGCATGGATGAACAGGAGGagtccaatttatctgttttaaagaggaagacatttctttgtgttttt-------aatctttcttgtttttatggtGTCTACT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9871913 123 - 75148670 -----TGTTAGG---GGATTCAGCGTCTAACATAGAAA--------------------------------------------GCATGGATGAACAGGAGGAGTCCAATTTATCTGTTTTAAAGAGGAAGATATTTCTTTGTGTTTTT-------AATCCTTCTTGTTTTTATGGTGTCTACT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112716125 162 + 159171411 -----TGTCA-G---GGATACAGCATCTAACACAAAAAGCCTCTAACGTAGAACGCACGCTGTCCGTGGTTATTAAGTGGCTGCATGGATGAACAGGAGGAGTCCAATTGTTCTGTTTGAAAGAGGAAAACTTTTCTATGTGTTTTG-------A----TCCTTGTTTTCATACTGTCTACT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39285683 164 - 61074082 TCATAGGTGAGGTCTAGATGCAATCTCTA--ATAGTAT----------------GTACATAGCTGATAGTCAATAAATGAATGAATGAATTAGTATAAGGGGTCCAATTTATCTGTTTTAAAGAGGAAGACAATTCTTTATATTTTTCTTTAAGAACCTTTCCTATTTTTATGGTGTCCACC i canFam3.chr9 C 0 C 0 e mm10.chr11 99462126 985 + 122082543 I a score=790235.000000 s hg38.chr17_JH159146v1_alt 56204 221 + 278131 ACCAATTAAAATGTATTGTGCCATGTTTCTTAATTAAAATAAGAAATTTGATTGCATGTTTCTGTTGGTAAATGATCAT-ACAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATATGGGGTCAAGATACGTGGGGTAACTC--TGTTACCAAGACC-------------TTTAAGGAAATAGTATTATTGAATAGAAAATGGAACATTTGGGCTCTGAAGTCTT---A s panTro4.chr17 66176090 221 - 82630442 ACCAATTAAAACGTATTGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTGCATGTTTCTGTCGGTAAATGATCAT-ACAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATATGGGGTCAAGATACGTGGGGTAACTC--TGTTACCAAGACC-------------TTTAAGGAAATAGTATTATTGAATAGAAAATGGAACATTTGGGCTCTGAAGTCTT---A i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24705851 224 - 73212453 ACCAATTAAAATGTATTGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTCCATGTTTCTGTCGGTAAATGATCAT-ACAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATATGGGGTCAAGATACGTGGGGTAACTC--TGTTACCATGACC-------------TTTAAGGAAATAGTATCATTGAATAGAAAATGGAACATTTGGATTCTAAAGTCTTAAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47926632 221 - 81552678 ACCAATTAAAATGTATTGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATC-CATGTTTCTGTCGGTAAATGATCAT-ACAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATAAGGGGTCAAGATATGTGGGGTAA--C--TGTTACCATGACC-------------TTTAAGGAAACAGTATCATTGAATAGAAAATGGAACATTTGGGTTCTGAAGTCTTAAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53037839 224 + 80904711 ACCAATTAAAATATATCGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTCCATGTTTCTGTTGGTAAATGATCAT-GTAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATATGGGGTCAAGAGACGTGGGATAACTC--TGTTACCGTGACC-------------TTTAAGGAAATAGTATCATTGAAGAGAAAATGGAATATTTGGGTTCTGAAGTCATAAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52560597 224 + 80997621 ACCAATTAAAATATATCGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTCCATGTTTCTGTTGGTAAATGATCAT-GTAAGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACACAGGATATGGGGTCAAGAGACGTGGGATAACTC--TGTTACCGTGACC-------------TTTAAGGAAATAGTATCATAGAAGAGAAAATGGAATATTTGGGTTCTGAAGTCATAAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47605669 224 + 74645514 GCCAATTAAAATATATCGTGCCATGTTCcttaattaaaataagaaatttgatTCCATGTTTCTGTTGGTAAATGATCAT-ATAAGAATCATTC---ATGTCAGCTTTGTTCTGGAAATGAACACAGGATATGGGGTCAAGAGACGTGGGATAACTC--TGTTACCATGACC-------------TTTAAGGAAATAGTATCAttgaagagaaaatggaatatttgggTTCTGAAGTCATAAGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9872036 224 - 75148670 ACCAATTAAAATGTATTGTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTCCATGTTTCTGTTGGTAAATGATCAT-ACAGGAATCATTC---ATGTCAGCTTTGTTCTGGGAATGAACGCAGGATATGGGGTCAAGAGACGTGGGGTAACTC--TGTTACCATGACC-------------TTTAAGGAAATAGTATCATTGAAGAGAAAATGGAATATTTGGGTTCTGAAGTCTTAAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112716287 225 + 159171411 ACCAATGAAAGTGTATTCTGCCATGTTCCTTAATTAAAATAAGAAATTTGATTGCATGTTTCTATGGGTAAATGATCATAACAAGAATCGTTC---ATGTCAGCCTTGTTCTGGGAAAGAACACAGGGTATGGGGTCAGGAGACGTGGGGTAACTC--TGTTACCACGACC-------------TTTAAGGAAATAGTATCATTGAAGAGAAAATGGAACATTTGGGTTCTAAAGTCTTAAGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99463111 213 + 122082543 acTTAATGAAATGTGTCTTGTTATGTGCATTCATCTAAATAAGACATTCGATTGATTGTTTCTCTACACAA---AACAC-GAAACACTGATTC---ATATCAGATTTGTTTTGGGAAAGGATA---GATCTGGAAACAAGAGACTCAGGGCCA--C--TGCAATTGTGTCTG------------CTTCTGGTAATGACGTT-TCAGAGATAAGAGTGAATCCTTTGGCTCTACGGTCTTA--- i mm10.chr11 I 985 C 0 s canFam3.chr9 39285847 239 - 61074082 ACCAATTAACATGCATTTTACTATGTTCCTTATTCAACGAAGGAATTTTAATTGCATGTTTCTGTAGGTAAGTGAACAT-AAAACAATCAATCATTATGTTAGCTTTGTTGTGAGAAAGAACGCAGGACCTGGAGTCAAGAGACAGGATTTTACTCTGTGTTGCTGTGACCACGTTTCTTTACTTTTCAGGAAATAGTATTACTGAGGATAATATGAATAATTTGGGCTCCAAAGTCTTA--- i canFam3.chr9 C 0 I 269 a score=32888.000000 s hg38.chr17_JH159146v1_alt 56425 13 + 278131 TTTCATGACATTT s panTro4.chr17 66176311 13 - 82630442 TTTCATGACATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706075 13 - 73212453 TTTCATGACTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47926853 13 - 81552678 TTTCATGACTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53038063 13 + 80904711 TTCCAAGACTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52560821 13 + 80997621 TTCCAAGACTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47605893 13 + 74645514 TTCCAAGactttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9872260 13 - 75148670 TTCCAAGACTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112716512 13 + 159171411 TTCCATGACGTTT i calJac3.chr5 C 0 I 130 e canFam3.chr9 39286086 269 - 61074082 I e mm10.chr11 99463324 0 + 122082543 C a score=4095.000000 s hg38.chr17_JH159146v1_alt 56438 1 + 278131 A s panTro4.chr17 66176324 1 - 82630442 A i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706088 1 - 73212453 A i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47926866 1 - 81552678 A i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53038076 1 + 80904711 A i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52560834 1 + 80997621 A i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47605906 1 + 74645514 a i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9872273 1 - 75148670 A i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112716655 1 + 159171411 a i calJac3.chr5 I 130 C 0 s mm10.chr11 99463324 1 + 122082543 A i mm10.chr11 C 0 C 0 e canFam3.chr9 39286086 269 - 61074082 I a score=132315.000000 s hg38.chr17_JH159146v1_alt 56439 37 + 278131 AAGTGTTTATT-------TAGCTCTGGCTTCCTCT-GCTGGAAGA s panTro4.chr17 66176325 37 - 82630442 AAGTGTTTATT-------TAGCTCTGGCGTCCTCT-GCTGGAAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706089 37 - 73212453 AAGTGTTTAGT-------TAGCTCTGGCGCCCTCT-GCTGGAAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47926867 37 - 81552678 AAGTG-TTATT-------TAGCTCCGGCGCCCTCTGGCTGGAAAA i nomLeu3.chr19 C 0 I 129 s rheMac3.chr16 53038077 37 + 80904711 AAGTGTTTATT-------TAGCTCTGGTGCCCTCT-GCTGGACGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52560835 37 + 80997621 AAGTGTTTATT-------TAGCTCTGGTGCCCTCT-GCTGGACGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47605907 37 + 74645514 aagtgtttatt-------taGCTCTGGTGCCCTCT-GCTGGACGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9872274 37 - 75148670 AAGTGTTTATT-------TAGCTCTGGTGCCCTCT-GCTGGACGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112716656 37 + 159171411 aaGTGTTTATT-------TAGCTCTTGCGTCCTCT-GCTGGAGGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99463325 44 + 122082543 GAGGCTTTGGTTCGTGCGTAGCTCTGGCTCCCTCT-GCTGGCTCC i mm10.chr11 C 0 C 0 s canFam3.chr9 39286355 37 - 61074082 AAGTATTTATT-------TACCTCTTGCTCCCTCT-GCTGGATGA i canFam3.chr9 I 269 C 0 a score=150192.000000 s hg38.chr17_JH159146v1_alt 56476 59 + 278131 TTGACTTTCTTATTTGCTCCTGTAACGGATGGATATGCTGTGTGGCTGTAGAGctcctt s panTro4.chr17 66176362 59 - 82630442 TTGACTTTCTTATTTGCTCCTGTAACGGATGGATATGCTGTGTGGCTGTGGAGttcctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706126 59 - 73212453 TTGACTTTCTTATTTGCTCCTGTAACGGATGGATATGCTGTGTGGCTGTAGAGttccct i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53038114 59 + 80904711 TTGGCTTTCTTATTTGCTCCTGTAATGGATGGATATGCTGTGTGGCTGTAGAGTtccct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52560872 59 + 80997621 TTGGCTTTCTTATTTGCTCCTGTAATGGATGGATATGCTGTGTGGCTGTAGAGTtccct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47605944 59 + 74645514 TTGGCTTTCTTATTTGCTCCTGTAATGGATGGATATGCTGTGTGGCTGTAgagttccct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9872311 59 - 75148670 TTGGCTTTCTTATTTGCTCCTGTAATGGATGGATATGCTATGTGGCTGTAGAGttcctt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112716693 55 + 159171411 TTGGGTTTTTTCTTTGCTCTTGTA----ATGGATATGTTGTGTGGCTGTAGAGTTCCTT i calJac3.chr5 C 0 I 1249 s mm10.chr11 99463369 53 + 122082543 ATGCTTCCCTGCATGGCTTTGATAGTTGCTAGATCT------CAGCCCCTGGGTTCTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 39286392 54 - 61074082 TTTGCTTTGTGCTTTGCTCTTATA----ATGAGTATATTGTGTAGCTG-AGATTTTTTT i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 47926904 129 - 81552678 I a score=10137.000000 s hg38.chr17_JH159146v1_alt 56535 4 + 278131 ccct s panTro4.chr17 66176421 4 - 82630442 ccct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706185 4 - 73212453 ccct i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53038173 4 + 80904711 ccct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52560931 4 + 80997621 ccct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47606003 4 + 74645514 ccct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9872370 4 - 75148670 ccct i chlSab2.chr16 C 0 C 0 s mm10.chr11 99463422 4 + 122082543 CTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39286446 4 - 61074082 TCTT i canFam3.chr9 C 0 I 388 e calJac3.chr5 112716748 1249 + 159171411 I e nomLeu3.chr19 47926904 129 - 81552678 I a score=21822.000000 s hg38.chr17_JH159146v1_alt 56539 12 + 278131 ccctccct-cctt s panTro4.chr17 66176425 12 - 82630442 ccctccct-cctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706189 13 - 73212453 ccctccctccctc i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53038177 12 + 80904711 ccctccct-cctt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52560935 12 + 80997621 ccctccct-cctt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47606007 12 + 74645514 ccctccct-ctct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9872374 12 - 75148670 ccctcctt-cctt i chlSab2.chr16 C 0 I 229 s mm10.chr11 99463426 12 + 122082543 CCCTCTTG-CCCC i mm10.chr11 C 0 C 0 e canFam3.chr9 39286450 388 - 61074082 I e calJac3.chr5 112716748 1249 + 159171411 I e nomLeu3.chr19 47926904 129 - 81552678 I a score=-1690.000000 s hg38.chr17_JH159146v1_alt 56551 4 + 278131 tcct- s panTro4.chr17 66176437 4 - 82630442 tcct- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706202 4 - 73212453 ccct- i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53038189 2 + 80904711 --cc- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52560947 2 + 80997621 --cc- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47606019 2 + 74645514 --cc- i papAnu2.chr16 C 0 C 0 s mm10.chr11 99463438 4 + 122082543 -TCTT i mm10.chr11 C 0 C 0 e canFam3.chr9 39286450 388 - 61074082 I e calJac3.chr5 112716748 1249 + 159171411 I e chlSab2.chr16 9872386 229 - 75148670 I e nomLeu3.chr19 47926904 129 - 81552678 I a score=25745.000000 s hg38.chr17_JH159146v1_alt 56555 23 + 278131 tccttccttccttccttccttcc s panTro4.chr17 66176441 23 - 82630442 tccttgcttccttccttccttcc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706206 23 - 73212453 tccttccttccttccttccttcc i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53038191 23 + 80904711 ttcctccctccctccttccttcc i rheMac3.chr16 C 0 I 238 s macFas5.chr16 52560949 23 + 80997621 ttcctccctccctccttccttcc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47606021 23 + 74645514 tccctccctccctccttccccct i papAnu2.chr16 C 0 I 28 e canFam3.chr9 39286450 388 - 61074082 I e mm10.chr11 99463442 0 + 122082543 C e calJac3.chr5 112716748 1249 + 159171411 I e chlSab2.chr16 9872386 229 - 75148670 I e nomLeu3.chr19 47926904 129 - 81552678 I a score=45961.000000 s hg38.chr17_JH159146v1_alt 56578 145 + 278131 ttccttccttccttccttccttcctccctccctccctccctccctgcttgcctttctc------------------------------------tttctttctttctct--c-tctctctttcttta-ttcttccttcccccctccctctctgtctcccttcccttttcttttcttttttctttc s panTro4.chr17 66176464 135 - 82630442 ttccttccttccttccttccttcctccctccct------------gcttgcctttctc------------------------------------tttctttctttctctttc-tctctctctctttc-ttcttccttcccccctccctctctgtctcccttccCTAttcttttcttttttctttc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706229 123 - 73212453 ttcctccctccctccctctctttctttctttct-----------------tttctttc------------------------------------tttcttcctgtctgt--c-tgtctctctctttctttcttctttgccccctccctctctgtctcccttccctttccttttcttttt------ i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52560972 109 + 80997621 -----------------ccctccctccctGCTT------------GCCtctttctttc------------------------------------tttctttctttcttt--c-tttctttctttctt-tctttctttctttctttctttctttctttctttctttctttctttctttc------- i macFas5.chr16 C 0 I 226 s papAnu2.chr16 47606072 170 + 74645514 ttctttctttctttctttctttctttctttctt------------tcttctttctttctttttctttctctttcttttctttctttctctttcttttctttctttcttt--cttttccttccttcct-tccttccttccttctttccttccttccttccttccccctccctctctgtctcccttc i papAnu2.chr16 I 28 I 11 e canFam3.chr9 39286450 388 - 61074082 I e mm10.chr11 99463442 0 + 122082543 C e calJac3.chr5 112716748 1249 + 159171411 I e chlSab2.chr16 9872386 229 - 75148670 I e rheMac3.chr16 53038214 238 + 80904711 I e nomLeu3.chr19 47926904 129 - 81552678 I a score=22495.000000 s hg38.chr17_JH159146v1_alt 56723 48 + 278131 ctttcctttcct--gttttccttccttcc-ctctttcattcctttctttcC s panTro4.chr17 66176599 50 - 82630442 ctttcctttcctctgttttccttccttcc-ctctttcattcctttctttCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706352 50 - 73212453 ctttccttTCCTCTGTTTTCTTTCCTTCC-CTCTTTCATTGCTTTCTTTCC i ponAbe2.chr17 C 0 C 0 s papAnu2.chr16 47606253 49 + 74645514 ctttcctttcct--gttttccttcctttcattctttcattcctttctttcc i papAnu2.chr16 I 11 C 0 e canFam3.chr9 39286450 388 - 61074082 I e mm10.chr11 99463442 0 + 122082543 C e calJac3.chr5 112716748 1249 + 159171411 I e chlSab2.chr16 9872386 229 - 75148670 I e macFas5.chr16 52561081 226 + 80997621 I e rheMac3.chr16 53038214 238 + 80904711 I e nomLeu3.chr19 47926904 129 - 81552678 I a score=11449.000000 s hg38.chr17_JH159146v1_alt 56771 66 + 278131 ATCCCTAGttttcttttcttttcttttctttttttttttttttttgaggcagagtctcactcttgt s panTro4.chr17 66176649 52 - 82630442 ATCCCTAGttttcttttctttt--------------tttttttttgaggcagagtctcattcttgt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706402 51 - 73212453 ATCCCTAGttttcttttctttt--------------tttttttttgagacagagtctcactc-tgt i ponAbe2.chr17 C 0 C 0 e canFam3.chr9 39286450 388 - 61074082 I e mm10.chr11 99463442 0 + 122082543 C e calJac3.chr5 112716748 1249 + 159171411 I e chlSab2.chr16 9872386 229 - 75148670 I e papAnu2.chr16 47606302 0 + 74645514 C e macFas5.chr16 52561081 226 + 80997621 I e rheMac3.chr16 53038214 238 + 80904711 I e nomLeu3.chr19 47926904 129 - 81552678 I a score=138378.000000 s hg38.chr17_JH159146v1_alt 56837 261 + 278131 cccccaggctggagtgcagtggtgcaatcttggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgcgactacaggcgcccaccaccagacctggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacatcgtgacctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgtgcccagcc s panTro4.chr17 66176701 261 - 82630442 cccccaggctggagtgcagtggtgcgatctcggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgcgactacaggcgcccgccaccagacctggctaattttttgtacttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacatcgtgatctgcccgcctcagccttccaaagtgctgggattacaggtgtgagccactgtgcccggcc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706453 261 - 73212453 cccccaggccggagtgcagtggtgcaatctcagctcactgcaagctccacctcccgggttcacaccattctcctgcctcagcctcccgagtagctgcaactacaggcgcccgccaccagccccggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacatcgtgatctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccggcc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47927033 261 - 81552678 CCGccaggctggagtgcagtggtgccatcttggctcactgcaagctccacctcccgggttcaccccattctcctgcctcagcctcccgagtatttgggactacaggcgcccgccaccaggcccggctaattttttgtatttttggtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacatcgtgatctgcctgcctcaccctcccaaagtgctgggattacaggcgtgagccaccatgcctggcc i nomLeu3.chr19 I 129 C 0 e canFam3.chr9 39286450 388 - 61074082 I e mm10.chr11 99463442 0 + 122082543 C e calJac3.chr5 112716748 1249 + 159171411 I e chlSab2.chr16 9872386 229 - 75148670 I e papAnu2.chr16 47606302 0 + 74645514 C e macFas5.chr16 52561081 226 + 80997621 I e rheMac3.chr16 53038214 238 + 80904711 I a score=1365.000000 s hg38.chr17_JH159146v1_alt 57098 1 + 278131 T s panTro4.chr17 66176962 1 - 82630442 T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706714 1 - 73212453 T i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47927294 1 - 81552678 T i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52561307 1 + 80997621 t i macFas5.chr16 I 226 C 0 s mm10.chr11 99463442 1 + 122082543 T i mm10.chr11 C 0 C 0 e canFam3.chr9 39286450 388 - 61074082 I e calJac3.chr5 112716748 1249 + 159171411 I e chlSab2.chr16 9872386 229 - 75148670 I e papAnu2.chr16 47606302 0 + 74645514 C e rheMac3.chr16 53038214 238 + 80904711 I a score=3414.000000 s hg38.chr17_JH159146v1_alt 57099 2 + 278131 CT s panTro4.chr17 66176963 2 - 82630442 CC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706715 2 - 73212453 CC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47927295 2 - 81552678 CC i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52561308 2 + 80997621 cc i macFas5.chr16 C 0 C 0 s calJac3.chr5 112717997 2 + 159171411 cc i calJac3.chr5 I 1249 C 0 s mm10.chr11 99463443 2 + 122082543 CC i mm10.chr11 C 0 C 0 e canFam3.chr9 39286450 388 - 61074082 I e chlSab2.chr16 9872386 229 - 75148670 I e papAnu2.chr16 47606302 0 + 74645514 C e rheMac3.chr16 53038214 238 + 80904711 I a score=2176667.000000 s hg38.chr17_JH159146v1_alt 57101 637 + 278131 ATCCCCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtggtcctcatccttaaactgcatattggaatctcctgggAGACGTAATGTTGTAGGCTAAGGATATAATTCAGGCTATTACTGAATTATAAA-GCGTGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGTCACAGTGTTTTCAAGTCTGAAAAATCA-GATGCCATAGTTCTTTGTGTTTTT-AAGTTAGAGTCCATTGCCTTAAGTCCTCATGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATCCTTCAAATTAGTCTACTTAGAATTTGCTTTTAAATTTCTGCCTAATTTTAAAAAGACAATTGTGGGACTGAGTTGCTGTCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTATAACTCAT---GTGTGTGTGGG-----------------TGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCACTGTGGTCATGAAACCCAGGTTCACATTGATTTTATTGCAAAATTTAGATACATGCACCAGTCCACATGTTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT s panTro4.chr17 66176965 638 - 82630442 ATCCCCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtggtcctcatccttaaactgcatattggaatctcctgggAGACGTAATGTTGTAGGCTAAGGATATAATTCAGGCTATTACCGAATTATAAAAGCGTGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGTCACAGTGTTTTCAAGTCTGAAAAATCA-GATGCCATAGTTCTTTGTGTTTTT-AACTTAGAGTCCATTGCCTTAAGTCCTCATGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGAACCCATACTTTCTCCTCACTTTATCCTTCAAATTAGTCTACTTAGAATTTGCTTTCAAATTTCTGCCTAATTTTAAAAAGACAATTGTGGGACTGAGTTGCTGTCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTATAACTCAC---GTGTGTGTGGG-----------------TGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCACTGTGGTCATGAAACCCAGGTTCACATTGATTTTATTGCAAAACTTAGATACATGCACCAGTCCACACATTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24706717 655 - 73212453 ATCCTCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtggacctcatccttaaactgcgtattggaatctcctgggAGACGTAGTGTTGTAGGCTAAGGACATAATTCAGGCTATTACTGAATTATAAAAGCGTGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGTCACAGTGTTTTCAAGTCTGAAAAATCA-GAAGCCATAGTTCTTTGTGTTTTT-AACATAGAGTCCATTGCCTTAAGTCCTCACGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATCCTTCAAATTAGTCTACTTAGAATTTGCTTTCAAATTTCTGCCTAATTTTAAAAAGACAATTGTGGGACTGAGTTGCTGTGCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTATAACTCAC---ATGTGTGTGGGTTTTTTACTCTTATAACTGACACTTCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCACTGTGGTCATGAAACCCAGGTTCGCATTGATTTCATTGCAAAACTTAGACGCATGCACAAGTCCACACGTTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47927297 649 - 81552678 ATCCCCAATTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtggtcctcatccttaaactgcatattggaatttcctgggAGATGTAATGTTGTAGGCTAAGGATATAATTCAGGCTATTACTGAATTATAAAAGCATGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGTCACAGTGTTTTCAAGTCTGAAAAACCA-GAAGCCATAGTTCTTTGTGTTTTT-AACCTATAGTCCATTGCCTTAAGTCCTCACGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATCCTTCAAATTAGTCTACTTAGAATTTGCTTTCAAATTTCCGCCTAATTTTAAAAAGACAATTGTGGGACTGAGTTGCTGTCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTATAACTCAC---------GTGGGTTTTTTACTTTCATAACTGACATTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCACTGTGGTCACGAAACCCAGGTTCACATTGATTTTACTGCAAAACTTAGATGCATGCACAACTCCACACGTTAACTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53038452 651 + 80904711 ATCCCCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtgatcctcatccttaaactgcatattagaatctcctgggAGACATAATGTTGTAGGCTAAGGATATAATTCAGGCTTTTACTGAATTATAAAAGCATGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGCCACAGTGTTTTCAAGTCTGAAAAATCA-GATGCCACAGTTCTTTGTGTTTTT-AATCTAGGGTCCATTGCCTTAAGTCCTCATGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATTCTTCAAATTAGTCTACTTAGAATGTACTTTCAAAGTTCTGCCTAATTTTAAAAAGACAATTGTTGGACTGAGTTGCTGTCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTGTAACTC-------GTGTGTGTGGTTTTTACTCTCATAATTGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCGCTGTGGTCATGAAACCCAGGTTCACATCGATATGATTGCAAAACTTAGATGCATGCACGAGTCCACACATTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT i rheMac3.chr16 I 238 C 0 s macFas5.chr16 52561310 651 + 80997621 ATCCCCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtgatcctcatccttaaactgcatattagaatctcctgggAGACATAATGTTGTAGGCTTAGAATATAATTCAGGCTTTTACTGAATTATAAAAGCATGCTGTGT---------TCATATCCTGGAGGATGGAATTGGGCCACAGTGTTTTCAAGTCTGAAAAATCA-GATGCCACAGTTCTTTGTGTTTTT-AATCTAGGGTCCATTGCCTTAAGTCCTCATGGGCATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATTCTTCAAATTAGTCTACTTAGAATGTACTTTCAAAGTTCTGCCTAATTTTAAAAAGACAATTGTTGGACTGAGTTGCTGTCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTGTAACTC-------GTGTGTGTGGTTTTTACTCTCATAATTGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCGCTGTGGTCATGAAACCCAGGTTCACATTGATATGATTGCAAAACTTAGATGCATGCACGAGTCCACACATTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47606302 651 + 74645514 atccCCAGTTGTATATTGAATTATAATTAGATTCAAAAGAAACTTTTCAGCCAGTGATCCTCATCCGTAAACTGCATGTTAGAATCTCCTGGGAGACATAATGTTGTAGGCTAAGGATATAATTCAGGCTTTTACTGAATTATAAAAGTGTGCTGTGT---------TCATATCCTGGAGGATGGAATCGGGCCACAGTGTTTTCAAGTCTGAAAAATCA-GACGCcacagttttttgtgttttt-aatctaGGGTCCATTGCCTTGAGTCCTCATGGACATTTTAAGAAATAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATCCTTCAAATTAGTCTACTTAGAATTTACTTTCAAAGTTCtgcctaattttaaaaaggcaattgtGGGACTGAGTTGCTATCCTACCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTGTAACTC-------GTGTGTGTGGTTTTTACTCTCATAATTGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTATTTGGGCCGCTGTGGTCATGAAACCCAGGTTCACATTGATATGATTGCAAAACTTAGATGCATGCACGAGTCCACACATTAATTTGCTTAGTAttcttacctttta--------------------------------aaatgttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9872615 655 - 75148670 atccCCAGTTTTATATTGAATTATAATTAGATTCAAAAGAAACCTTTCAGCcagtggtcctcatccttaaactgcatattagaatctcctgggAGACATAATGTTGTAGGCTAAGGATATAATTCAGGCTCTTACTGAATTATAAAAGTGTGTTGTGT---------TCATATCCTGCAGGATGGAATTGGGCCACAGCGTTTTCAAATCTGAAAAATCA-GACGCCACAGTTCTTTGTGTTTTT-AACGTAGGGTCCATTGCCTTAAGACCTCATGGGCATTTTAAGAAACAGATCAAAGTATT----TGATGAGCTCAGGGTATGGGCACCCATACTTTCTCCTCGCTTTATCCTTCAAATTAGTCTACTTAGAATTTACTTTCAAAGTTCTGCCTAATTTTAAAAAGACAATTGTGGGACTGAGTTGCTGTCCTGCCCTTTTTCTTTAATTGTTATTTGACTTCAGA----------CTCTTCCTGTAACTCAT---GTGTGTGTGTGTTTTTTACTCTCATAATTGACACTCCTCTGAAAAATGGGCCAACAGAAGGGCTTATTACTTGGGCCACTGTGGTCATGAAACCCAGGTTCACATTGATATGATTGCAAAACTTAGATGCATGCACACGTCCACACATTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AGAAGTTT i chlSab2.chr16 I 229 C 0 s calJac3.chr5 112717999 650 + 159171411 attccCAGTTTAATGTTGAATGAT-ATTAGATTCAAAAGAAACCTTTCAGCCAGTGATCCCCCTCCTTAAGCTGCATGTTGGAATCTCCTGGGAGACGTAATGTTGTAGGCTGAGGCTATAAATCAGGGTTTTA-TGAATTATAAA-GTGCGCTGTGT---------GCATATCCCAGAGGATGGAATTGGGTCACAGTATTTTCAAGTCTGAAAAATCA-GCAGCTGCAGTTCTCTGTGTTTTT-AACCTAGGGCCCATTGCCTTAAGTCCTCATGGGCATTTTGAGAACTAGATAAGTGTTTT----TGATTAACTCAGGGTATGGGCACTCATACTTTCTCCCTGCTTTATCCTTCAAATCAGTCTACTTAGAATTGGTTTTCAAAGTTCTGCCTAATTTTAAAAGGACAATTGTGGGACTGAGTTGCTGTCCTACCCTTTGTCT----TTGTTATTTGACTTCAGA----------CTCTTCCTATAACTCACGT-GTATGTGTGTGTTTTTTATTCTTATAATCGACACTTCGTGGAAAAATGGGCCAACAGAAGAGCTTATGATTTCGGCCACTGTGGTCATGAAACCCAGGTTCACATTGATTTTATTGCCAAATTTAGATGCATGCACAAGTCCACACATTAATTTGCTTAGTATTCTTACCTTTTA--------------------------------AAATGTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99463445 573 + 122082543 CTCTCCACTCTTATGTTACACTCTCCTTCGATCCAAGAGGAATTCCTCAGGCAACGACTCTCAGTTGTCAGC--CACACTGGATTCTCTAAGG-----TAGTGTGGT--------GAGATGCTTCAGGCTAAAGTCATATTGGTCATGTGTATAGTTT---------TTGTA--CTGGACGATGG-GTTAAGTTGGATTATTTTCAAATCTGAGAAAGGATAACACCATGCTACTTTGTACTCCTGAGCCCAGAAACTGTTATCGGAAGGCACTCTAGATGTTTTAACAAACACAGCAAAGTACT----AGATCCATCCAGAGCATGG--ACTCCAAGTCTCTCCGAATCTTGTCC-TCAGATTAGTCGA-----GGCTAGTCTCCAAAGTCCTGCC-AAGCTTATTAAGGGTGTTGAGTGA-----TTGCTGTTATGTTCGCATTATC---TTAGTATTTTACTTTAAA----------TGTTTCC--------------------TGGGTT---------------TGACAGACCTCTG-GAAACGTGCCAGTGGGGATGCCTATGATGTAGGGCATTGGGACCAGGAAACCCGGTTGCAC-TGGGTTTTGATGCAGAACTCAGACA-ATGAACGAGTC--------AAGT--CTTAGT----TTATCTTTTC--------------------------------AGCAATAC i mm10.chr11 C 0 C 0 s canFam3.chr9 39286838 668 - 61074082 ATTCCCAAGCTTATATTGAACTATACTTAGACCTTAGA-AATCCTTTAACTCGGTGGTTCCTGTCATTAAGCTGCACACTGGCATCTCCACAGAG-CTTGACGTCATAGGCTAAGGATATAATTCAGGATTTTACTGTGTTCAGTGTttttgttttgttttgttttgttttgtCCTGGAGGCTGGCATTTAACTACAGTGTTTTCAAATTTGAGAAACCA-GAAGCTATG----------------ATTCTAGGGACCATTGCCTTAAATCATCAGGGACATTTTAAGGAATGTATGAAAATATTGAACTAGCTAGCTCAGGGTATGGGT-TTCATA-TTTCTCCTGACTTGATCCTTTGAATAAGTCTATTAGGAAGTTGCCTTCAAGATCCTACCAAGTTCTTTAAAGATTATTGTGTGACTGAGTTGCTGTGCTACCCATCTCCTTTCACTGTTATTTTACTTCAGATAACTCAGATTGCTTCTTATAACTCTTATGGTTTTTGTAGG-----------------TAACAGAGCCCTGAAAAATGGGCCCACAGGCATG---ATTGCCTAGG---CTGTGGTTAAGAAATCCAGATCCACATTGATTCTGTTGTGAAACTCAGATATAT---TGAGTCCATGTTCTAATTTGCTTAATATTCAGACCttttattttatttacttttatttttaatatattttttaaagattt i canFam3.chr9 I 388 I 183 a score=768781.000000 s hg38.chr17_JH159146v1_alt 57738 245 + 278131 TTGCTTCTCAGACCCTTGTGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCttgtttttt---------------------ttttgttttttttGACACAGTCTGCATCTATCCCAGCCTCAGTCCTCAACTTCCA-CTGCTCTGTGTAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTATTAGCAAACATT-CCTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAGGA-TCACGATTTT s panTro4.chr17 66177603 246 - 82630442 TTGCTTCTCAGACCCTTGCGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCTTTTTTTTT--------------------GTTTTTTTTTTTTTGACACAGTCTGCATCTATCCCAGCCTCAGTCCTCAACTTCCA-CTGCTCTGTGTAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTATTAGCAAACATT-CCTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAGGA-TCACGATTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24707372 253 - 73212453 TTGCTTCTCAGACCCTTGCGATCT--CAAGTCAGAAGTCCCTGACCTCTTAATACTTGTTttttcttttct-------------tttcttttcttttTGACACAGTCTGCATTTATCCTAGCCTCAGTCCTCAACTTCCA-TTGCTCTGTGTAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTATTAGCAAACATT-CCTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAGGA-TCACGATTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47927946 229 - 81552678 TTGCTCCTCAGACCCTTGCGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCTTGTTTTTT--------------------------TTTTTTTTG--ACAGTCTGCATCTATCCCAGCCTCAGTCCTCAACTTCCA------CTGTGTAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAAGGCCTTTCC----TCTATTGGCAAACATT-CCTGTTCT--TAGAGCCTCAGAGAGCGAGGCAATGACAGGA-TCACGATGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53039103 254 + 80904711 TTGCTTCTCAGGCCCTTGCGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCTTGTGTGTGTGTGTGTGT-----------TTTTTTTTTTTTTTGACACAGTCTGCATCTATTCCAGCCTCAGTCCTCAACCTCCA-CTGCTCTGTATAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGGCAACAGGGCCTTTCCTCCATCTGTTGGCAAACATT--CTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAAGA-TCACGATTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52561961 252 + 80997621 TTGCTTCTCAGGCCCTTGCGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCT--TGTGTGTGTGTGTGT-----------TTTTTTTTTTTTTTGACACAGTCTGCATCTATTCCAGCCTCAGTCCTCAACCTCCA-CTGCTCTGTATAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTGCTGGCAAACATT--CTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAAGA-TCACGATTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47606953 265 + 74645514 ttgcttcTCAGGCCCTTGCGATTT--CAAGTCAGAAGTCCCTGACCTCTtaatgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttttttttttgacacagtctgcATCTATTCCAGCCTCAGTCCTCAACCTCCA-CTGCTCTGTATAGCATAATCCCCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTGTTGGCAAACATT--CTGTTCT--TAGAGCCTCAGAGAGTGAGGCAATGACAAGA-TCACGATTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9873270 262 - 75148670 TTGCTTCTCAGGCCCTTGTGATTT--CAAGTCAGAAGTCCCTGACCTCTTAATGCtttttttttttttttttt---ttttttttttttttttttttttGACACAGCCTGCATCTATCCCAGCCTCAGTCCTCAACCTCCA-CTGTTCTGTATAGCATAATCCTCA-TGCAG-TCCCACAGTTACAGTCAACAGGGCCTTTCCTCCATCTGTTGGCAAACATT--CTGTTCT--TAGCGCCTCAGAGAGTGAGGCAATGACAAGA-TCACGATTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112718649 228 + 159171411 TTGCTTCTCAGACCCTTGTGATTT--CAAGTCTCAAGTCCCTGACCTCTTAATGCTTGG----------------------------------TTTTTGACAC-GTCCGCAGCCATCCC-GCCTCAGTCCTCGCCCTCCA-CTGGTCTGTGCAG--TCATCCCCA-CGCAG-CCCCGCAGTTATAGTCAATAGGGTCTTTCCTCCATCTATTGGCAAACATT-CCTGTTCT--TAGAGCCTCAG-GAGTGAGACAACGACAGGATTCATGATTTA i calJac3.chr5 C 0 C 0 s mm10.chr11 99464018 220 + 122082543 TAG-TTTTGGGGTTCTCCCACGTT--GAAATCAGAAGTCCCTGTCCCTGTAACACT------------------------------------------------GCCTGTGTCTGCTCTGGCTCCAAGCCTCAGCTGCCACCTGACCTGTGTGGCACTGTCACCA-TGGGGAGCTCATGGTTCTGGTCACCTGATTTTCGTCTGCACCTGTTAGCAAGCACTGTTTGTCTG--CTGACTCCCAGAGAGTGAGGGGATGGTAAAA-GCATGACTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39287689 235 - 61074082 TTGCTTCCCAGATTCTCTTTTTTTCCCAAATCAGAGGTCCCTGCCCTATTCACAGTTGG----------------------------------TCTTTGGCACTGTCTGCATCTGTCCTGGCCCAAGTCCTCATCTGCTC-TGGGTCTGCCTGGCACAGTCTCCACTGCAG-TCCCACGGTCATGGCCAGGGAGGTTTTTTTT--ACCTACTGGCCAACGTT-CCTGTTCTTGTAGAGCCTCAGAGAGTGAGGCAATGCTGAGA-TCAGGATTtt i canFam3.chr9 I 183 I 136 a score=223485.000000 s hg38.chr17_JH159146v1_alt 57983 82 + 278131 AA----CATTTCCCCTTTCCTGAAGCTTCTTTATTGGGACACTGGTGTTAAAAAGGAAAAAAA-----------------AAAACAGCTTAATTAAAAATTTT s panTro4.chr17 66177849 81 - 82630442 AA----CATTTCCCCTTTCCTGAAGCTTCTTTATTGGGACACTGGTGTTAAAAACGAAAAAAA-----------------AAA-CAGCTTAATTAAAAATTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24707625 80 - 73212453 AA----CATTTCCCCTTTCCTGAAGCTTCTTTATTGGGACACTGGTGTTAAAAAGGAAAAGAA-----------------AA--CAGCTTAATTAAAAATTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47928175 81 - 81552678 AA----CATTTCTCCTTTCCTGAAGCTTCTTTATTGGGACACCGGTGTTAAAAAGGAAAAAAA-----------------AAA-CAGCTTAATTAAAAATGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53039357 97 + 80904711 AA----CGTTTCTACTTTCCTGGAGCTTCTTTATTGGGACACTGGTGTTAAAAAGGAAAAACAAACCAACAACAACAAA-AAA-AAGCTTAATTAAAAATTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52562213 97 + 80997621 AA----CGTTTCTACTTTCCTGGAGCTTCTTTATTGGGACACTGGTGTTAaaaaggaaaaacaaaccaacaacaacaac-aaa-aaGCTTAATTAAAAATTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47607218 97 + 74645514 AA----CGTTTCTACTTTCCTGGAGCTTCTTTATTGGGACACTggtgttaaaaaggaaaaacaaaccaacaacaacaac-aaa-aagcttaattaaaaatttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9873532 98 - 75148670 AA----CGTTTCCACTTTCCTGGAGCTTCTTTACTGGGACACTGGTGTTAAAAAGGaaaaacaaaccaacaacaacaacaaaa-aAGCTTAATTAAAAATTTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112718877 86 + 159171411 AA----AATTTCGCCTTTCCTGAAGCTTCTTTACTGGGACACTGGTGTTAAAAAGGAaaaacaaaaca------------aaa-caaaacaaTTTAATGtttt i calJac3.chr5 C 0 I 238 s mm10.chr11 99464238 75 + 122082543 AAATATCCTTTAACTTTTCCAGAAGCTTC-TTATTAGGGCACCGGTGTTAAAAGGAAAAG--------------------AAG-TCTCTT------ATATTGT i mm10.chr11 C 0 C 0 e canFam3.chr9 39287924 136 - 61074082 I a score=1653849.000000 s hg38.chr17_JH159146v1_alt 58065 574 + 278131 TATGTATCATGTGGAGCAGGGTTGCCTA------------------------------------------------------------------------------------------AATGAGAAAAAGATACTTGAAATCCCAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATTGTGAGGACAGAGGGCTGTGTCCTGAGTCCCTAGCCTACAATCCCTGTGTCCATCAGTCAAGGAGGGCAG-CCT-------CATCACAGCTGCAGGCTCTCCTGCATATCTTTGTCAATTGTCGACCGACTAATTCTATTCAGGT---------------TGCCTTTTGTAGGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGACCCTTGGCTAGGA-TCTGTTTCAAACGATGAAGAAAGTTC-TTTTTTCATTGTTACAGGAATTGTGTTTAATGAGATGTAGAAGGCTGTAGTGTAAAA---CTTTTTTTTAAATGGGGTTAGG-AGGTTTAAGGGAGATAATTGAAAACCTGGTTATCTCTTGTTTTAGTAGTGGTTCTTTGCTGCTGTACATGTAACACAAACTACTTGAATTTCAAGATGCTACCATCCCTTGGGCATGAATTATGAATGTTTGATATTCCTTGATTCC s panTro4.chr17 66177930 574 - 82630442 TATGTATCATATGGAGCAGGGTTGCCTA------------------------------------------------------------------------------------------AATGAGAAAAAGATACTTGAAATCCCAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATTGTGAGGACAGAGGGCTGTGTCCTGAGTCCCTAGCCTACAATTCCTGTGTCTATCAGTCAAGGAGGGCAG-CCT-------CATCACAGCTGCAGGCTCTCCTGCATATCTTTGTCAATTGTCGACTGACTAATTCTATTCAGGT---------------TGCCTTTTGTAGGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGACCCTTGGCTAGGA-TCTGTTTCAAACGATGAAGAAAGTTC-TTTTTTCATTGTTACAGGAATTGTGTTTAATGAGATGTAGAAGGCTGTAGTGTAAAA---CTTTTTTTTAAATGGGGTTAGG-AGGTTTAAGGGAGATAATTGAAAACCTGGTTATCTCTTGTTTTAGTAGTGGTTCTTTGCTGCTGTACATGTAACACAAACTACTTGAATTTCAAGATGCTACCATCCCTTGGGCATGAATTATGAATGTTTCATATTCCTTGATTCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24707705 574 - 73212453 TATGTATCACGTGGAGCAGGGTTGCCTA------------------------------------------------------------------------------------------AATGGCAAAAAGATACTTGAAATTCCAGCCTCTATTTTCATCAGTCGGAGGAATTCAGAGGAGGCTCAGGA-AAATTGTGAGGACAGAGGGCTGTGTCCTGAGTCCCTAGCCTACAATCCCTGTGTCCATCAGTCAAGGAGGGCGG-CCT-------TGTCACAGCTGCAGGCTCTCCTGCATGTCTTTGTCAGTTGTTGACCGACTAATTCTATTCAGGT---------------TGCCTTTTGTGGGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGACCCTTGGCTAGGA-TCTGTTTCAAACGACGAAGAAAGTTC-TTTTTTCGTTGTTACAGGAATTGTGTTTAATGAGATGTAGAAGGCTGTAGTGTAAAA---CCTTTTTTTAAATGAGGTTAGG-AAGTTTAAGGGAGGTAAATGAAAACCTGGTTATCTCTTGTTTTAGTAGTGGTTCTTTGCTACTGTACATGTAACACAAACTACTTAAATTTCAAGATGCTACCATCCCTTGGGCATGAATTATGAATGTTTGATATTCCTTGATTCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47928256 573 - 81552678 TATGTATCATGTGGAGCAGGGTTGCCTA------------------------------------------------------------------------------------------AATGACAAAAAGATACTTGAAATCCCAGCCTCTATTTTCATCAGTCAGAGGAAATCAGAGGAGGCTCAGGA-AAATTGTGAGGCTAGAGGGCTGCGTCCTGAGTCCCTAGCCTACAATCCCTGTGCCCATCAGTCAAGGAGGGCTG-CCT-------CTTCACAGCTGCAGGCTCTCCTGCATATCTTTGTCAATTGTCAACTAA-TAATTCTATTCAGGT---------------TGCCTTTTGTAGGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTTTTTTGAACAAGACCCTTGGCTAGGA-TCTGTTTCAAACGACGAAGAAAGTTC-TTTTTTCATTGTTACAGGAATTGTGTTTCATGAGATGTAGAAGGCTGTAGTGTAAAA---CATTTTTTTAAATGGGGTTAGG-AGGTTTAAGGGAGATAAATGAAAACCTGGTTATCTCTTGTTTTAGTAGTGGTTCTTTGCTACTGTACATGAAACACAAACCACTTAAATTTCAAGATGCTACCATCCCTTGGACATGAATTATGAATGTTTGATATTCCTTGATTCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53039454 565 + 80904711 C-TGTATCACGTGGAGCAGTCCTGCCTA------------------------------------------------------------------------------------------AATGACAATAAGATACTTGAAATCACAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATCGTGAGGACAGAAGGCTGTGCCCTGAGTCCCTAGCCTACAATCCCTGTCTCCATCAGTTAAGGAGCGCGG-CCC-------CTTCACAGCTGCAGTCTCTC----CTATCTTTGTCAATTGTCGATGGACCAATTATATTCAGGT---------------TGCCTTTTGTAAGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGAACCTTGGCTAGGA-TCTATTTCAAACGAGGAAGAAAGTTC-TTTTTTCACTGTTATAGGAA------TTAATGAGATGTAGAAGGCTGTAGTGTAAAAAG-TTTTTTTTTAAATGGGGTTAGG-AGGTTTAAAGGAGATAAAGGAAAACCTGATTATCTCTTGTTTTAGTAGTGGTTCTTTGCCACTGTACATGTAACACAAACTACTTAAATTTCAAGATGCTACCATCCATTGGGCATGAATTATGAATGTTTGATATTCCTTGATTCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52562310 565 + 80997621 C-TGTATCACGTGGAGCAGTCCTGCCTA------------------------------------------------------------------------------------------AATGACAATAAGATACTTGAAATCACAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATCGTGAGGACAGAAGGCTGTGCCCTGAGTCCCTAGCCTACAATCCCTGTCTCCATCAGTTAAGGAGCGCGG-CCC-------CTTCACAGCTGCAGTCTCTC----CTATCTTTGTCAATTGTCGATGGACCAATTATATTCAGGT---------------TGCCTTTTGTAAGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGAACCTTGGCTAGGA-TCTATTTCAAACGAGGAAGAAAGTTC-TTTTTTCACTGTTATAGGAA------TTAATGAGATGTAGAAGGCTGTAGTGTAAAAAG-TTTTTTTAAAAATGGGGTTAGG-AGGTTTAAAGGAGATAAAGGAAAACCTGATTATCTCTTGTTTTAGTAGTGGTTCTTTGCCACTGTACATGTAACACAAACTACTTAAATTTCAAGATGCTACCATCCATTGGGCATGAATTATGAATGTTTGATATTCCTTGATTCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47607315 566 + 74645514 c-tgtatcaCGTGGAGCAGGCCTGCCTA------------------------------------------------------------------------------------------AATGACAATAAGATACTTGAAATCACAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATCGTGAGGACAGAAGGCTGTGTCCTGAGTCCCTAGCCTACAATCCCTGTCTCCATCAGTTAAGGAGCGCGG-CCT-------CTTCACAGCTGCAGTCTCTC----CTATCTTTGTCAATTGTCGATGGACCAATTATATTCAGGT---------------TGCCTTTTGTAAGGGTCAGCAGAG-TAGGATCCTGGCAATTTCATATGATTAAAACTATTTTGAACAAGAACCTTGGCTAGGA-TCTATTTCAAACGAGGAAGAAAGTTC-TTTTTTCACTGTTATAGGAA------TTAATGAGATGTAGAAGGCTGTAgtgtaaaaagttttttttaaaaagggggttAGG-AGGTTTAAAGGAGATAAAGGAAAACCTGATTATCTCTTGTTTTAGTAGTGGTTCTTTGCCACTGTACATGTAACACAAACTACTTAAATTTCAAGATGCTACCATCCATTGGGCATGAATTATGAATGTTTGATATTCCTTGATTCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9873630 576 - 75148670 C-TGTATCACATGGGGCAGGACTGCCTA------------------------------------------------------------------------------------------AATGACAAAAAGATGCTTGAAATCACAGCCTCTATTTTCATCAGTCAGAGGAATTCAGAGGAGGCTCAGGA-AAATCGTGAGGACAGAAGGCTGTGTCCTGAGTCCCTAGCCTACAATCCCTGTCTCCATCAGTTAAGGAGGGCGG-CCT-------CTTCACAGCTGCAGGCTCTCCTGTCTATCTTTGTCAATTGTCAATGGACTAATTATATTCAGGT---------------TGCCTTTTGTAAGGGTCAGCAGAG-TAGGATCCTGGCATTTTCATATGATTAAAACTATTTTGAACAAGACCCTTGGCTAGGA-TCTATTTCAAACGAGGAAGAAAGTTC-TTTTTTCACTGTTATAGGAATTGTGTTTAATGAGATGTAGAAGGCTGTAGTGTAAAAAGTTTTTTTTAAAAATGGGGTTAGG-AGGTTTAAAGGAGATAAAGGAAAACCTGATTATCTCTTGTTTTAGTAGTGGTTCTTTGCCACTGTACATGTAACACAAACTACTTAAATTTCAAGATGCCACCATCCATTGGGCATGAATTGTGAATGTTTGATATTCCTTGATTCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112719201 574 + 159171411 TATGTATCACCTGGAGCATAGTTGCCTA------------------------------------------------------------------------------------------AATGACAAAAAGATACTTTAAATCCCAGCCTCTGTTTTCATCTGTCAGGGGAATTCAGAGGAGGCTCGGGA-AAATCGTGAGGACAGAGGGCTGTGTCCTGAATCCCTAGCTTACAATTCCCGCGTCCATTGGTCAAGGAGGGCGGCCCT-------CTTCACAGCTGCAGGCTCTCCTGCATATATTTGTCA-TTGTTGACAAACTAATTCTATTCAGGG---------------TGTCTTTTGTAAGGATCAGCTGAG-TAGGATCCTGGCAATTTCAGATGATTCAGGCTCTTTTGAGCAAGACCCTTGGCTAGGA-CCTATTTCAAACAAGGAAGAAAGTTCTTTTTTTCATTGCTAAAGGAGTTGTGTTTAATGAGATACAGAAGGCTGTAGTTTAAAA---TGTTTTTTAAAATGGGGTTAGG-AGGTTTATGGGAGATGAATGGAAACCTGGTGATCTCTTGTTTTAGTGGTGGCTCTTTGCTACTGTACACGTAACACAGACTACTTAAA-TTCAAGATGCTACCAACCCTTGGGCATGAACTGTCATTGTTTGATATTCCTTGCTTCC i calJac3.chr5 I 238 C 0 s mm10.chr11 99464313 596 + 122082543 -AATGATCTCAGGGAGCTGAGTGGCCCAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagaaaagaaagagagaaagCTACTGAAAGTTTCTAGCT-TATTCTC--CAATCAGATGGGCTCAGAGGAGGCCCTGAACACATTGTGAGACCAGAGTG-----------GCCATTTGTTTTCAATCACTGTGCCCACCAGGGAATAGGTTAAG-CCTGCCCTGACATCACCCCTTCCCACTGACCTGGTCAGCTCTGTCCTTTGTGGATGGACTAACTATGATGAAGTAGAGTAATATGAAGCTGTCCTTATTATGGATTGGAGGGGACAGAACATCTGCTGTCTCATAGGGCTCCATTTATTTTGAGAAAGATCTTTGGCTAGAATTCCAGTTCAAATAACTGTTAAAGTGT------TCCCTGTCACA---------------------CACAGGACTTCA-----------TGTTCTGTGAGGTGGTGTCATGCAGGCTCAACGGAGATAAGAGAAGGCCTAGTTATGTCCTG-----GTGGCCATTTTTTGCCATCGTTCACAGGATACAG------------TCAGTATA-----ATCCCTGAGG-----------------------TCTTTTATGTG i mm10.chr11 C 0 C 0 e canFam3.chr9 39287924 136 - 61074082 I a score=5707055.000000 s hg38.chr17_JH159146v1_alt 58639 1686 + 278131 ATCACAGGAC----TTGTATGG---TTGATCTTTGTCCAA-CCC--GAGCCTTGGATCAGGAAAAAGGATGAGTTCGGGTTTATGTTGCC-CTATAGCCAGCAGGGGGTGTTCGTGGCCTTCCTATTCCAAAAGG------CCGCAGCACCCTCTCCCAGGCTCCGGGTG-----------------------------------------AAA--------------CTGGTTTGTGAGTCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTTTACCAAGAACAGCATTACTTCTGAGTGAGCAACAGCTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTGAAAAGCAAAATATATCTT----CTA-TTTTTAACTTGTTCCCTA-------AACATGAATTACCTGG---GGG-----------AAAAGCAGATGCT-------TTTC---AATCTTTTAAATGATTGCACCTATTCTAAACCATCCAGGTGTTTTTGAAATGACCCACAGTCATCTTTAATAGCATGCGAAGGGGCCAAGGCCCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GTCAGAGATA--TTGACAGAGATAGGCCTGACTGTTCTGCTGTAATTTCAACTCATTTTCTCCTGCTCTAATATCTATAGTACGGGATGGAC--TTTTTTTTTT-------------------------T---Cttttctgtagaggccaggtcataaata-tttaggc-----------tgtgtgggctggagaga----ctgttgcaact--------actca-------actctgctg---------------------------tcct-tgtgc------------aagagcag--ctgtagac----------------------------------aatatgcaa--------------------------------------------acaaacgttcatg-------------------actgtgtcctaat-aaactttatttgtaaTTTGGCCACGCCCTAT-----CTT---------------------------------------------ATTGATAGCC-------CTCCAAAAC-GTCAGTATCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------CTCCGATT-------------------------------AAGAGGAAAATAATCGAATCTGAAAGT---CCCTCAGGTTCAACTCCTTTC-----CCAATGCCTGGTCCCCCTTATAACACTCTTGACAAGCA-TCTTTGCCCACTGCTCGGAACTCTCATGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCGAAGAGCAGACAGCGTGATACAAATGCACAGAAGTTTTTAAGGAGATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGATGAGCTTTTAATCTTTTCATTCATCGCAGGGTTTAATCCATA-TTTGAAAAGAAAGATGCCACAGTATAAAGCTGACAGGCACTGACTGGCCTGAAATATCTCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTGAAGACATAAATGCCAGTACAGAAATAAACTCTGACGAGTTGTCTTGTAAAGGGAGCCAGCTCTTAGAGAAGGGATCATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTCTACTACCTGACATTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTGTGAACAGATGGTTTCGTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGACGGCTGCCTGCAGTTTTAGTCTCTCTTTAC--CCAT-CTTAAACTTTTTCTTCCCCTCTCCATTTTTGAGAGCAAGAG-----GTTACATGCTCCCTTTCCTCCTGTAGAAGAAACATTTAGCTGGGGCTGAC-ACAATGGCGAGGACATGAGAAATGACC-AC----AGGAGAAGCCCTGGAGGCAGAAGACTAGGTCT s panTro4.chr17 66178504 1690 - 82630442 ATCACAGGAC----TTGCATGGATATTGATCTTTGTCCAA-CCC--GAGCCTTGGATCAGGAAAAAGGATGAGTTCGGGTTTATGTTGCC-CTATAGCCAGCAGGGGGTCCTCGTGCCCTTCCTATTCCAAAAGG------CCGCAGCAACCTCTCCCAGGCTCCGGGTG-----------------------------------------AAA--------------CTGGTTTGTGAGTCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTTTACCAAGAACAGCATTACTTCTTAGTGAGCAACAGCTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTGAAAAGCAAAATATATCTT----CTA-TTTTTAACTTGTTCCCTG-------AACATGAATTACCTGG---GGG----------GAAAAGTAGATGCT-------TTTC---AATCTTTTAAATGATTGCACCTATTCTAAACCATCCAGGTGTTTTTGAAATGACCCACAGTCATCTTTAATAGCATGCGAAGGGGCCAAGGCCCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GTCAGAGATA--TTGACAGAGATAGGCCTGACTGTTCTGCTGTAATTTCAACTCATTTTCTCCTGCTCTAATATCTATAGTACGGGATGGAC--TTTTTTTTTT-------------------------t----ttttctgtagaggccaggtcataaata-tttaggc-----------tgtgtgggctggagaga----ctgttgcaact--------actca-------actctgctg---------------------------tcct-tgtgc------------aagagcag--ctgtagac----------------------------------aatatacaa--------------------------------------------acaaacgttcatg-------------------actgtgtcctaat-aaactttatttgtaaTTTGGCCACGCCCTAT-----CTT---------------------------------------------ATTGATAGCC-------CTCCAAAACAGTCAGTATCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTGTT----------------------------------------------------CTCCGATT-------------------------------AAGAGGAAAATAATCGAATCTGAAAGT---CCCTCAGGTTCAACTCCTTTC-----CCAATGCCTGGTCCCCCTTATAACACTCTTGACAAGCA-TCTTTGCCCACTGCTCGGAACTCTCATGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCAAAGAGCAGACAGCATGATACAAATGCACAGAAGTTTTTAAGGAGATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGGCGAGCTTTTAATCTTTTCATTCATCGCAGGGTTTAATCCATA-TTTGAAAAGAAAGATGCCACAGTATAAAACTGACAGGCACTGACTGGCCTGAAATATCTCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTGAAGACATAAATGCCAGTACGGAAATAAACTCTGACGAGTTGTCTTGTAAAGGGAGCCAGCTCTTAGAGAAGGGATCATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTCTACTACCTGACATTCTCAAACCCTTCTTTCCTT----TTTACTTTTTCTGTGAACAGATGGTTTCGTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGACGGCTGCCTGCAGTTTTAGTCTCTCTTTAC--CCAT-CTTAAACTTTTTCTTCCCCTCTCCATTTTTGAGAGCGAGAG-----GTTACATGCTCCTTTTCCTCCTGTAGAAGAAACATTTAGCTGGGGCTGAC-ACAATGGCGAGGACATGAGAAATGACC-AC----AGGAGAAGCCCTGGAGGCAGAAGACTAGGTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24708279 1699 - 73212453 ATCACAAGAC----TTGTAAGGATATTGATCTTTGTCCAA--CA--GAGCCTTGGATCAGGAAAAAGGATGAGTTCGGGTTTATGTTGCC-CTATAGCCAGCAGGCGGTGCTGGTGCCCTTCCTATTCCAAAAGG------CTGCAGCAACCTCTCCCAGGCTCCGGGTG-----------------------------------------AAA--------------CCGGTTTGTGAGTCACCATTACCATCCTTCTTTCTCTATTCAAATTGGCATTTTACCAAGAACAGCATTACTTCTTAGTGAGCAACAGTTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTAAAAAGCAAAATATATCTT----CTA-TTTTTAACTTGTTCCATA-------AACATGAATTACCTGG---GGGGGGGGGAGGGGGGAAGTAGATGCT-------TTTC---AATCTTTTAAATGATTGCACCTATTCTAAACCATCCAGGTGTTTTTGAAATGACCCACAGTCATCTTTAATAGCATGGGAAGGGGCCAAGGCCCTCTCCACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GTCAGAGATA--TTGACAGAGATAGGCCTGACTGTTCTGCTGTAATTTCAACTCATTTTCTCCTGCTCTAATATCTATAGTACGGGATGGGC--TTTTTTTTTT-------------------------T---tttttctgtagaggccaggtcacaaata-tttaggc-----------tgtgtgggctggagaga----ccgttgcaact--------actca-------actctgctg---------------------------tcct-tgtgt------------aagagcag--ctgtagaa----------------------------------aatatgcaa--------------------------------------------acaaacattcatg-------------------actgtgtcctaat-aaactttatttataaTTTGGCCACGCCCTAT-----CTT---------------------------------------------ATTGATAGCC-------CTCCAAAACAGTCAATACCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------TTCCGATT-------------------------------AAGAGGAAAATAATCAAATCTGAAAGT---CCCTCAGGTTCAACTCCTTTC-----CCAATGCCTGGTCCCCCTTATAATACTCTTGACAAGCG-TCTTTGCCCACTGCTCGGAACTCTCATGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCGAAGAGCAGACAGCGTGATACAAATGCACAGAAG-CTTTAAGGAGATAGCACAACAACTCAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTGATCTTTTCATTCATCGCAGGGTTTAATTCATA-TTTGAAAAGAAAGATGCCACAGTATAAAACTGACAGGCACTGACTGGCCTGAAATGTCTCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTGAAGACATAAATGCCAATACGGAAATAAACTCTGACAAGTTGTCTTGTAAAGGGAGCCAGCTCTTAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-CTGTTTTGTCTACTACCTGACATTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCCGTGAACAGATGGTTTCGTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGACGGCTGCCTGCAGTTTTAGTCTCTCTTTAC--CCAT-CTTAAACTTTTTCTTCCCCTCTCCATTTTTGAGAGCGAGAG-----GTTACATGCTCCTTTTCCTCCTGTAGAAGAAACATTTAGCTGGGGCTGAC-ACAAAGGCAAGGACATGAGAAATGACC-AC----AGGAGAAGCCCTGGAGGCAGAAGACTAGGTCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47928829 1691 - 81552678 GTCACAAGAC----TTGTATGGATATTGATCTTTGTCCAA-CCC--GAGCCTTGGATCAGGAAAAAGGATAAGTTCGGGTTTATGTTGCC-CTACAGCCAGCAGGGGGTGCTCGTGCCCTTCCTATTCCAAAAGG------CTGCAGCAGCCGCTCTCAGGCTCCAGGTG-----------------------------------------AAA--------------CTGGTTTGTGAGTCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTCTACCAAGAACAGCATTACTTCTTAGTGAGCAACAGTTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTAAAAAGCAAAATATATCTT----CTA-TTTTTAACTTTTTCCATA-------AACATGAATTACCTGG---GGG----------GAAAAGTAGATGGT-------TTTC---AATCTTTTAAATGATCACACCTATTCTAAACCATCCAGGTGTTTTTGAAATGACCCACAGTCGTCTTTAATAGCATGCGAAGGGGCCAAGGCCCTCTCAACTTTAGATTTAATAGGCTGCCCCCTTCAGTT--GTCAGAGATA--TTGATGGAGATAGGCCTGACTGTTCtgccgcaatttcaacccattttctcctgctctaatatctatagtacgggatggaC--TTTTTTTTTT-------------------------TTTTtttttctgtagaggccagatcataaata-tttaggc-----------cgtgtgggctggagagc----ctgttgcaact--------actca-------actctgctg---------------------------tcct-tgtgc------------aagagcag--ctgtagac----------------------------------aatatgcaa--------------------------------------------acaaacgttcatg-------------------actgtgtcctaat-aaactttatttataaTTTGCCCACGCCCTAT-----CTT---------------------------------------------ATTGATAGCC-------CTCCAAAACAGTCAATACCCTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------TTCCGATT-------------------------------AAGAGGAAAATAATCGAATCTGAAAGT---CCCTCAGGTTCAACTCCTTTC-----CCATTGCCTGGTCCCCCTTATAACAATCTTGACAAGCA-TCTTTGCCCACTGCTCGGAACTCGCATGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCGAAGAGCAGACAGCGTGATACAAATGCACAGAAGCTTTTAAGGAGATAGCACAACAATTCAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTAATCTTTTCATTCATCACAGGGTTTAATCCATA-TTTGAAAAGAAAGATGCCACAGTATAAAACTGACAGGCACTGACTGGCCTGAAATATCTCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTCCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTGAAGACATAAATGCCAATACGGAAATAAACTCTGACAAGTTGTCTTGTAATGGGAGCCAGCTCATAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTTTACTACTCGACCTCCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTGTGAACAGATGGTTTCTTCCAGCTTGAAGTGGGTTTAGGGGAGACTGAGAAAACAAGATGTCTGCCTGCAGTTTTAATCTCTCTTTAC--CCAT-CTTGAAC---TTCTTCCCCTCTCCATTTTTGAGAGCGAGAG-----GTTACATGCTCCTTTTCTTCCTCTAGAAGAAACATTTAGCTGGGGCTGAT-ACAAAGGCGAGGACATGAGAAATGACT-GT----AGGAGAAGCCCTGGAGGCAGAAGACTAGGTCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53040019 1686 + 80904711 ATCACAAGAC----CTGTGTGGATATCGATCTTTGTCCAA-CCC--GAACCTTGGATCAGGAAAAGGGATGAGTTCAGGTTTATGTTGCC-CTAGAGCCAGCAGGGGGTGCTCGTGCCCTTCCTATTCCAAAAGG------TTGCCGCAACCTCTCCTAGGCTCAGGGCG-----------------------------------------AAA--------------CTGGTTTGTAAATCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTTTGTCAAGAACAACATTACTTCTTAGTGAGCAACAGTTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTAAAAAGCGAAATATATCTT----CTA-TTTTTAACTTTTCCTGTA-------AACATGAATTACCTGC---GGG----------GAAAAGTAGATGCT-------TTTC---AATCTTCTAAATGATTGCACCAATTCTAAACCATCCAGGTG-TTTTGAAATGACCCACAGTCGTCTTTAATAGCATGAGAAGGGGCCAAGGCTCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GGCAGAGATA--TTGACAGAGATAGGCCAGACTGTTCTGCTGTAATGTCAACTAATTTTCTCCTGCTCTAATATCTATAGTACGGGATTGACTTTTTTTTTTTT-------------------------TTTTtttttctgtagaggccaggtcataaata-tttaggc-----------tgtgtgggctggagaca----ctgttgcaact--------actca-------act-----------------------------------ct-tgtgc------------aaaagcag--ctgtagac----------------------------------aatatgcaa--------------------------------------------acaaacattcatg-------------------actgtgtcctaataaaactttatttataaTTTGGCCATGCCCTGT-----CTT---------------------------------------------ATTGATAGCC-------TTCCAAAACAGTCAATACCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------TTCTGATT-------------------------------AAGAGGAAAATAATTGAATCTGAAAGT---CCCTCAGGTTCAACTCTTTTC-----CCAGTGCCTGGTCCCCCTTATAACACTCTTAACAAGCA-TCATTGCCCACCGCTCGTAACTGTCAAGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCCAAGAGCAGTCAGCGTGATCCAAATGCACAGAAGTTTTTAAGGAAATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTAATCCTTTCATTCATCGCAGGGTTTAATCCGTA-TTTGAAAAGAAAGGTGCCAC-GTATAAAACTGACAGGCACTGACTGGCCTGTAATATCCCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTAAAGACATAAATGCCAATACGGAAATAAACTCTGACGAGTTGTCTTGTAATGGGAGCCAGCTCTTAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTCTACTATGCGACCTTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTATGAACACATGG-TTCTTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGATGGCTGCCTGCAGTATTAGTTTTTCTTCAC--CCAT-CTTAAACCTCTTCTTCCCCTCTCCATTTTTGAGAGCGAGGG-----GTTACATGCTCCTTTTCTTCCTCTAGAAGAAACATTTAGCTGGGGCTGAC-ACAAAGGCGAGGACATGAGAAACGACC-AT----AGGAGAAGCCCTGGAGGCAGAAGTCTAGGTCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52562875 1685 + 80997621 ATCACAAGAC----CTGTGTGGATATCGATCTTTGTCCAA-CCC--GAACCTTGGATCAGGAAAAGGGATGAGTTCAGGTTTATGTTGCC-CTAGAGCCAGCAGGGGGTGCTCGTGCCCTTCCTATTCCAAAAGG------TTGCCGCAACCTCTCCTAGGCTCAGGGCG-----------------------------------------AAA--------------CTGGTTTGTAAATCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTTTGTCAAGAACAACATTACTTCTTAGTGAGCAACAGTTAACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTAAAAAGCGAAATATATCTT----CTA-TTTTTAACTTTTCCTGTA-------AACATGAATTACCTGC---GGG----------GAAAAGTAGATGCT-------TTTC---AATCTTCTAAATGATTGCACCAATTCTAAACCATCCAGGTG-TTTTGAAATGACCCGCAGTCGTCTTTAATAGCATGAGAAGGGGCCAAGGCTCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GGCAGAGATA--TTGATAGAGATAGGCCAGACTGTTCTGCTGTAATGTCAACTAATTTTCTCCTGCTCTAATATCTATAGTATGGGATTGAC-TTTTTTTTTTT-------------------------TTTTttttcctgtagaggccaggtcataaata-tttaggc-----------tgtgtgggctggagaca----ctgttgcaact--------actca-------act-----------------------------------ct-tgtgc------------aaaagcag--ctgtagac----------------------------------aatatgcaa--------------------------------------------acaaacattcatg-------------------actgtgtcctaataaaactttatttataaTTTGGCCATGCCCTGT-----CTT---------------------------------------------ATTGATAGCC-------TTCCAAAACAGTCAATACCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------TTCTGATT-------------------------------AAGAGGAAAATAATTGAATCTGAAAGT---CCCTCAGGTTCAACTCTTTTC-----CCAGTGCCTGGTCCCCCTTATAACACTCTTAACAAGCA-TCATTGCCCACTGCTCGTAACTGTCAAGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCCAAGAGCAGTCAGCGTGATCCAAATGCACAGAAGTTTTTAAGGAAATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTAATCTTTTCATTCATCGCAGGGTTTAATCCGTA-TTTGAAAAGAAAGGTGCCAC-GTATAAAACTGACAGGCACTGACTGGCCTGAAATATCCCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAAGATACTTGGATGCCTTAAAGACATAAATGCCAATACGGAAATAAACTCTGACGAGTTGTCTTGTAATGGGAGCCAGCTCTTAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTCTACTACGCGACCTTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTATGAACACATGG-TTCTTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGATGGATGCCTGCAGTATTAGTTTTTCTTCAC--CCAT-CTTAAACCTCTTCTTCCCCTCTCCATTTTTGAGAGCGAGAG-----GTTACATGCTCCTTTTCTTCCTCTAGAAGAAACATTTAGCTGGGGCTGAC-ACAAAGGCGAGGACATGAGAAACGACC-AT----AGGAGAAGCCCTGGAGGCAGAAGTCTAGGTCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47607881 1684 + 74645514 ATCACAAGAC----CTGTGTGGATATCGATCTTTGTCCAA-CCC--GAACCTTGGATCAGGAAAAGGGATGAGTTCAGGTTTATGTTGCC-CTAGAGCCAGCAGGGGGTGCTCGTGCCCTTCCTATTCCAAAAGG------TTGCCGCAACCTCTCCTAGGCTCAGGGCG-----------------------------------------AAA--------------CTGGTTTGTAAATCACCATTACcatccttctttctctgttcaaATTGGCATTTTGTCAAGAACAACATTACTTCTTAGTGAGCAACAGTTGACCAATtatctagaaaaatattt-gggaagctatacaattttaaaagtaaaaagcgaaatatatctt----cta-tttttaacttttcctgTA-------AACATGAATTACCTGC---GGG----------GAAAAGTAGATGCT-------TTTC---AATCTTCTAAATGATTGCACCAACTCTAAACCATCCAGGTG-TTTTGAAATGACCCACAGTCGTCTTTAATAGCATGAGAAGGGGCCAAGGCTCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GGCAGAGATA--TTGATAGAGATAGGCCAGACTGTTCTGCTGTAATGTCAACTAATTTTCTCCTGCTCTAGTATCTATAGTACgggattgac--tttttttttt-------------------------tttttttttctgtagaggccAGGTCATAAATA-TTTAGGC-----------TGTGTGGGCTGGAGAca----ctgttgcaact--------actca-------act-----------------------------------ct-tgTGC------------AAAAGCAG--CTGTAGAC----------------------------------AATATGCAA--------------------------------------------ACAAACATTCATG-------------------ACTGTGtcctaataaaactttatttataatttggCCATGCCCTGT-----CTT---------------------------------------------ATTGATAGCC-------TTCCAAAACAGTCAATACCTTCCATATATCTgttattttatgttgtttataaactCAAACTCTT----------------------------------------------------TTCCaatt-------------------------------aagaggaaaataattGAATCTGAAAGT---CCCTCAGGTTCAACTCTTTTC-----CCAGTGCCTGGTCCCCCTTATAACACTCTTAACAAGCA-TCATTGCCCATTGCTCGTAACTGTCAAGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCCAAGAGCAGTCAGCGTGATCCAaatgcacagaagtttttaagGAAATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTAATCTTTTCATTCATCGCAGGGTTTAATCCGTA-TTTGAAAAGAAAGGTGCCAT-GTATAAAACTGACAGGCACTGACTGGCCTGAAATATCCCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCcaagaacatttttctttctgccttttgatCTGTTGAAAGATCCACAAGATACTTGGATGCCTTAAAGACATAAATGCCAATACGGAAATAAACTCTGACGAGTTGTCTTGTAATGGGAGCCAGCTCTTAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-TGTTTTTGTCTACTACCCAACCTTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTGTGAACACATGG-TTCTTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGATGGTTGCCTGCAGTATTAGTTTTTCTTCAC--CCAT-CTTAAACCTCTTCTTCCCCTCTCCATTTTTGAGAGCGAGAG-----GTTACatgctccttttcctcctctagAAGAAACATTTAGCTGGGGCTGAC-ACAAAGGCGAGGACATGAGAAACGACC-AT----AGGAGaagccctggaggcagaagtcTAGGTCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9874206 1678 - 75148670 ATCACAAGAC----CTGTGTGGATATCCATCTTTGTCCAA-ATC--GAACCTTGGATCAGGAAAAGGGATGAGTTCAGGTTTATGTTGAC-CTGTAGCCAGCAGGGGGTGCTCGTGCCCTTCCTATTCCAAAAGG------TTGCTGCAACCTCTCCTAGGCTCAGGGCG-----------------------------------------AAA--------------CTGATTTGTAAATCACCATTACCATCCTTCTTTCTCTGTTCAAATTGGCATTTTGTCAAGAACAACATTACTTCTTAGTGAGCAACAGTTGACCAATTATCTTGAAAAATATTT-GGGAAGCTATACAATTTTAAAAGTAAAAAGCGAAATATATCTT----CTA-TTTTTAACTTTTCCCGTA-------AACATGAATTACCTGC---GGG----------GAAAAGTAGATGAT-------TTTC---AATCTTCTAAATGATTGCACCAATTCTAAACCATCCAGGTG-TTTTGAAATGACCCACAGTCGTCTTTAATAGCATGCGAAGGGGCCAAGGCCCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAATT--GGCAGAGATA--TTGATAGAGATAGGCCAGACTGTTCTGCTGTAATGTCAACTAATTTTCTCCTGCTCTAGTATCTACAGTATGGGATTGAC---------TTT-------------------------TTTTtttttctgtagaggccaggtcataaata-tttaggc-----------tgtgtggcctggagaca----ctgttgcaact--------actca-------act-----------------------------------ct-tgtgc------------aaaagcag--ctgtagac----------------------------------aatatgcaa--------------------------------------------acaaacgttcatg-------------------actgtgtcctaataaaactttatgtataaTTTGGCCATGCCCTAT-----CTT---------------------------------------------ATTGATAGCC-------TTCCAAAACGGTCAATACCTTCCATATATCTGTTATTTTATGTTGTTTATAAACTCAAACTCTT----------------------------------------------------TTCTGATT-------------------------------AAGAGGAAAATAATCGAATCTGAAAGT---CCCTCAGGTTCAACTCCTTTC-----CCAGTGCCTGGTCCCCCTTACAACACTCTTAACAAGCA-TTATTGCCCACTGCTCGTAACTGTCAAGCTTTGTGTCTTCCCTGCAACACAAGCAGTGGCCCCCAAGAGCAGTCAGCGTGATCCAAATGCACAGAAGTTTTTAAGGAAATAGCACAACAATTTAGAAACTAAGGCTGCTGGAATGGTGAGCTTTTAATCTTTTCATTCATCGCAGGATTTAATCTGTA-TTTGAAAAGAAAGGTGCCACAGTATAAAACTGACAGGCACTGACTGGCCTGAAATATCCCAGGAAAATCTGGT---TTCAGATTTTTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCATAAGATACTTGGATGCCTTAAAGACATAAATGCCAATACGGAAATAAACTCTGACAAGTTGTCTTGTAATGGGAGCCAGCTTTTAGAGAAGGGATAATTGTAAGGGTAGGAACTGAAA-CTTTTTTGTCTACTACGCGACCTTCTCAAACCCTTCTTTCCTT----TGTACTTTTTCTATGAACACATGG-TTCTTCCAGCTTGGAGTGGGTTTAGGGGAGACTGAGAAAACAAGATGGCTGCCTGCAGTATTAGTCTTTCTTCAC--CCAT-CTTAAACCTCTTCTTCCCCTCTCCATTTTTGAGAGTGAGAG-----GTTACATGCTCCTTTTCCTCCTCTAGAAGAAACATTTAGCTGGGGCTGAC-ACAAAGGCGAGGACATGAGAAACGACC-AT----AGGAGAAGCCCTGGAGGCAGAAGACTAGGTCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112719775 1720 + 159171411 TCCACGAGAC-----TGTGTGGTTATTGATCTTTGTTCAA-CCC--AAGCCTTGGATTATTAAAAAGAATGAGTTCGGGTTAATGTTGCC-CTATCGCCAGCAGGGGGTGGTCGTGCCCTTCCAATCCCAAAAGG------CTACAGCAACATCTTCCAGGC-------A-----------------------------------------AAA--------------CTGGTTTG--AGTCACCATTACCATC---CTTTCTCTGTTCAAATTGACATTTTGCCAAGAACAGCATTACTTCTTAGCGAGCAGCAGTTGATCAATTATCTTGAAAAATATTT-AGGAAGCTATAAAATTTTAAAAATGAAAAGCAAAATATATCTT----CTATTTTTTAACTTTTTCCATA-------AACATGAATCACCTGG---GGA------GGGGGGGAAGTAGATGCT-------TTTC---AATCTTTTCAATGATTGCACCAGTTCTAAACCATCCAGGTGTTTTTCAAATGACCCACAGTCATATTTAATAGCATGTGAAGGGGCTAACGTCCTCTCAACTTTAGATTTAATAGCCTGCCCCCTTCAACT--GGCAGAGATA--TTGATAGAGACAGACCAGACTGTTCTGCTATAATTTCAACTCATTTTCTCCTGTGTTAATATCTATAGcatgggacggaa--attt-----------------------------------tttttctgtagaggccaggtcataaata-tttaggc-----------tgtgtgggccagagaga----ctgttgcaact--------actcc-------acttggctg---------------------------tgat-tgtgc------------aagagcag--ctctagac----------------------------------aatatgcaa--------------------------------------------acaaaggctcatg-------------------actgtgtcctaataaaactttatttatagTTTGGCCACGCCCTGT-----CTTTTTGACAGCCCtccaattttagtatatgtgctgccgaagtgagcacTTGACAGCC-------TTCCAAAACCGTCAGCACCTTCCATATA-CTGTTATTTCATGTTGGTTATAAACTCAAGCTCTT----------------------------------------------------TTCTGATG-------------------------------AAGAGGAAAATAACAGAATCTGAAAGT---CCCTCTGGTTCAACTCCTTTC-----CCAATGCCCGGTCCCCCTTATGACACTCTTGACAAGCA-TCCTTGCCCATAGCTCGAAACTCTCATGCTTTCTTTCTTCCCTGCAACACAAGCAGCAGCCCTGAAGAGCAGACGGGATGATACAAATGCA-AGACG-TTTTAAGGAGATAGCACGGCAATTTAGAGACGAAGGCTGCTGGAATGGTGAAGTTTTAATCTTTTCATTCATCGCAGAGTTTAATCCATA-TCTGGAAAGAATGATGCCACAGTATAAAACCGACAGGCACTGACTGGCCTGAAATATCCCAGGAAAATAGGGTTTATTAAGATTTCTC-TAGGAGTTGATCCAAGAACATTTTTCTTTCTGCCTTTTGATCTGTTGAAAGATCCACAGGATACTTGGACGCCTAAAAGACATAAATGCCGACACGGAAATACACTCTGACAAGTGGCCTTGTGAAGGGAGCCAGTTCTTAGAGAAGGAGTAATTGTAAGGGTGGGAACTGAAACCTTTTTTGTCTACTACCCGACCTTCTGAAACCCTTCTTTCCTT----TGTGCTTTTTCTGTGAACAGATTGTTTCTTCCAGCTTGGAGTGGGTTTA-GGGAGCCTGAGAAAACGCGGTTGCT-CCTGCAGTGTGAGTC--TCTTTAC--CTGA-CCTAAACTTCCTCTTCCCCTCTCCATTGTTGAGAGTGAGAA-----GTTACATGCTCCTTTTCTTCCTCGAGAAGTAACATTTAGCTGGGGCTGAC-ACAGAGGCCAGGACACGAGAAATGACCAAG----AGGAGAAGCCCAGGAGGCAGAAGACGAGGTCT i calJac3.chr5 C 0 I 304 s mm10.chr11 99464909 1844 + 122082543 ATGACA-------------TGGAGATTAATTTGACTTCAAATTT--GCACCTTGAAGAAGGAAAAAGCGTG------------CCTTGCCTCTTTGGCCAGCAGGGGTCGCTCTTGCTCTTTCTCTCTAACAGAGGCTAACCTGAAGCAACCCCTTCCAGGTTGCTGGGGATaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaT--------------CCAGTTTCTGACTCACC--TCCCGACCTTTTTACTCTGTTCAAATTAGCATCTTGCGAAAAACACCATGA--------TGAGCAATAGTTGACCATGAGTCTGGAAAGGGATTGAAGAAAACTATACAGTTTTAAAAGAAAACTGCCCATGGTCTCTTTTGACTA-TTTAAAATTTTTGCCCTGGGTTAGCAGCAGGGATGGGGTGGAGTGGG----------GTGAGGAGAATGATTCAGACATTTTAAAAATCTTTTAAGTGATTGCACCAATTCTAACCTCTTTAGGTAGTCTGCAAAGTGCCTTTGCTTCCATTTAGTCGGCTGTGAAGGATCAAAGCCCCTTTTTGCTTTA---CTAAGAGATGGTCCACTTTTCCCAGGGCAGAGTTA--TT----GAGAGAGGCCTAATTACCCTGCTGTGATTTTAACCCAGTTAGTTCTGCTCTCCCAACCACAGCAGAGGTTGGGA--CTCCTTTTCCGCAAAAGTTACAGGCCTGATGGTAATTTTTATTTTCatatatgtatgaatatatatg-tatatgtatgcatatgtgtgtgtgtgtgtgtgtgt----gtgtatgAActggcctggaactcactatgtcattttgtagcccaggctagcctcaggctcacagtgatcct-tctgtctctgcctcctgaagaccaggattgtaggcatgagccactcatcacacctggTCCCTGGAGGTAAATATTTAAAAATCTCTGGGGTCAAAGAAACAGGTCTGTAACTCTGCCCTTGCACAATCTGTCATGGATGACATGTAAGTGGGTCACTGTGTCTTAAC-AAACGTTATGCCCACTTCAGTCACTCCTTCA-----CCT---------------------------------------------ACAGACACCTACAGATGTTCAAAACCAGTCAACACCC-CTACCTAGCTGTTATTTTACATTCTTTATAAACAGGAACTCTA----------------------------------------------------TTCTAGT----------------------------------GAAGTCACTGATCAGA--------T---CCCCCCAGTTCAACCTCTTTC-----CTGGTGCCAAATGTCCCTAAGTGCATCCCTGTCAGCTG-TCAT--CTCTCTGATTAGGAGTTTCCTGAGCTCGGTCTT---------ATACACAAAGGCAC--AAAGGCTGACAACAGACCACGAGCGCA-------------GGAGAT----------CTTAGGAACCGGTGCTGCTGTAATTGTGAACTTGTGGTCTTTAAATCCATTGCCTCATTTCCTCCACA-TCTGAGAAGATCGATGCCCTCCTATAAAA-GAACAGGCACCGACTGGCCTGAAATAGCCCAGGAAAATCTGGT---GTGAGATTTCTCTTAGGAGCCGATCCAAGAACATTTTTC-TTCTGCCCTTTGATCTGTTGAAAGATGCTCACGAGACTTGGATGCCTTAGAGACAGAAATACCAGGATGG------GTTCTGATAAATGGTCCCACA--GGGAGTCAG------------------------GGCTGGG----GGAA-CGTCTGTGTGTACTGCTGGAGTTCAACAAACCTGCCTTTCTTTCACATGCTCGCTGTCTCTGAGCAGCCTGTTTCCTTC----TGTGGAGAGCTCA-----GCCTTAGCAATCA------CCGCTTGCACTTTAAGTCTCTCTTCTCCTCCAC-TTCAAACTTGCCAAGTCCCTCACCCACGTTGGTAGCAGCGGCTTGAGTTATTTGTTCCTTCCCTTCTAGGGAGAAAGACTCTCCTGTGGGGCTGACTATAGAGTGAAGGAAATGAGAAGCAGCC-AGGAGAAAGAAAAACCCTGAAGGTAGCAGAGGAGATTT i mm10.chr11 C 0 I 1 s canFam3.chr9 39288060 1743 - 61074082 atcccaggactctgCTGTGTGAATATTGATCCTTGTCCAA-CCTGAGAGCCCTG-CTCAGAAAAAAGAGTATGTTCAGGCCTACGTTACCTCTATGGTCAGCAGGGGGCGCACTTGCACTGCT--CTGAAAAAGG------CTACCGCACCCTTTCCGAGGCTCCTGGGG-----------------------------------------GGAAGGGCGGGAGAACCCAAGCTTGTGAGTCACCATTCTCACCCTTCCCACTCTGTGCAAATTGGCATTTTGCAAAGAACAGCATTGTTCATTGGTGAGCAACAGTTGACCAGTCAACCTGAAAAACATTT-GGGAAAC--TACAACTTTAAAAGTAAAAAACGAAAGACTTCTT----TGA-TATT--ATTTTTGCCGCA-------AGCGTGAATTACCTGG---GGG----------AAAGAGCAGATGCT-------TTTC---AGTCTCTTAAGTTATTACACCAGCCCTAAATTATTCAGGTATTCTTTAAGTTAGTCGTGTTCAGGTTTAGGAGTGTGCAAAGGGTCAGAAGCGATCTCAACT----GTCAGGAAGGTTGCCTCCTTTTCCT--GGCAGACATATGTTGTTAGAGTTGGGCCTG---TTTCTGCTGTAATTTCAACTCATTTTCTCCTGGCCTAATGTCTACAGATgaggctggca-------------------------------------gattttcttctgtaagggccagatggtaaatattttaagc-----------ttcgtgggccagagaaaaactcagttgtaacc--------actca-------gctctgctg-----------------------------ctgtcccc------------caaagcag--ccttatac----------------------------------aatatgtaa--------------------------------------------acaagtgggtgtg-------------------gctgtgtactaatgagactttatttataaCTTGGCCA--ACCTATAGGCATCT---------------------------------------------ATAGATA--C-------TTTAAAACGAGTTCATATCTTTCATATATCTGTTATTTTACATTCTTC-TAAGTGCAAACTCTTCTAATGAACAAGAGAATAATTAGGATTtttttaaaaaaacgttttatttaaattccagttcattaacatacactgtaacatcagtttcaggAACAAGAGAATAATCAAATCCGAATGCCTGCTGTCTGGTTCTACTCCTGTTTAGAATTGATGCCTGGTCCCCCTTACAACATTCGTGAACAGTGTTCATTGCCCTCTACTTGGAAAGCTTAGATTT---GTTTTTCCTGTAAGCAAGGCAGT-GCCCCAAAGAGCAGAGAAGGTGATAAAAGTCCACAGAATTTTGTAAGAAGATAATACAATAATTTAGAAACCAGCAATGCTGGATTCATGAACTCTTAATCTTTTCATCTGTCACACCATTTAATCCATATTTTAAAAAGAAAGATGCCACAGTATAAAA-TAACAGGAACCAACTGGCCTGAAAGATCCCAGGAAAATCTGGT---TTAAGGTTTTTC-TAGGAGTTGAGCCAAGAACATTTTTCTTTCTGCCTTTTGATCCGTTGAAAGATACACAAGCTACTGGGATGCTTTGAGGACACCGATGCCAATATGGAAATAAACTCTGACAAGTTGTTTTGCGGAGGGAGCCAGCACTCAGAGAAGGGATCATTGTAAGGTTAGGAACTGGAG-CTTTTGGGTCTACTGCCTTA---TCTCAAACCCATCCT---------TGTACTCTTTCTGTGAATGGATTCTGTCTCTC--------TCGAGTTTGAGGTAGA--GAGGTAACAGGATTGCTGCCTGGGATCTCAGTC-CTCTTCAC--CTCTGCTTAAGCTCCCCCTGCCCCTCCTGGCTTCAGATAGTG-GAG-----GCTACCTACCTGTCTCCCTCCCTGTAAAGAAACCTTCATCAGGAGCCACT-ACAGAGGGGAAGCTGGAGGGCATGAAG-AG----CTGAGAAG------------------------ i canFam3.chr9 I 136 C 0 a score=496646.000000 s hg38.chr17_JH159146v1_alt 60325 151 + 278131 TTGCCCCTTTTACAGTGAGATAGTTTTATA--------TAAATATCAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAAACCTCGATGTACTGTGGGACCCAAACGAGCACGTGAATCCCTTCTAGAT s panTro4.chr17 66180194 151 - 82630442 TTGCCCCTTTTACAGTGAGATAGTTTTATA--------TAAATATCAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAAACCTCGATGTACTGTGGGACCCAAACGAGCACATGAATCCCTTCTAGAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24709978 151 - 73212453 TTGCCCCTTGTACAGTGAGATAGTTTTATG--------TAAATATGAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAAACCTCGATCTAGTGTGGGACCCAAACGAGCACATGAATCCCTCCTAGAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47930520 151 - 81552678 TTGCCCCTTTTACAGTGAGATAGTTTTATA--------TAAATATCAGAGGTTACCG-GAGGCACCCAAACAAAATTGAGCACAGGAAGCAAATATCTGAGAGGCTCCCAAACCTTGATCTACTGTGGGACCCAAACGAGCACATGAATCCCTCCTAGAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53041705 141 + 80904711 TTGCCCCTTTTACAGTGAGA------------------TAAATATCAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAGACCTCTGTCTACTGTGGGACCCAAATGAGCACATGACTCCCTTCTAGAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52564560 141 + 80997621 TTGCCCCTTTTACAGTGAGA------------------TAAATATCAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAGACCTCTGTCTACTGTGGGACCCAAATGAGCACATGAATCCCTTCTAGAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47609565 141 + 74645514 TTGCCCCTTTTACAGTGAGA------------------TAAATATGAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAGACCTCTGTCTACTGTGGGACCCAAATGAGCACATGAATCCCTTCTAGAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9875884 141 - 75148670 TTGCCCCTTTTACAGTGAGA------------------TAAATATCAGAGGTTACTG-GAGGCACCCAAACAAAATTGAGGACAGGAAGCAAATATCTGAGAGGCTCCCAGACCTCTGTCTACTGTGGGACCCAAATGAGCACATGAATCCCTTCTAGAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112721799 151 + 159171411 TTGTCCCTTTTACAGTGAGATAGTTTTATG--------TAAACATCAGAAGTTCCTG-GAGGCACCCAAACAAAATGGAGGACAGGAAGCAAATATCTGAGAGGCCCCCAAACCTCTATCTACTGTGGGACCCAAACGAGCACATGAATCCCTTCTGGAT i calJac3.chr5 I 304 C 0 s mm10.chr11 99466754 124 + 122082543 TTACCCCATTTA-GGTGATG-TTATTTATG--------CTAATGTCAG--GCTGTGG-AAGGTACC-----------AGGGGCAGGAAGACAGTATCCCAGGCAACCTCCACCCTC----TCCTCTGAGA--------GGCACATACATCCTTTGAAGAT i mm10.chr11 I 1 I 891 s canFam3.chr9 39289803 154 - 61074082 ------CTTTTATATCAAGATGACTTTATGTAAATACATAAATGTCAGAGGTTACTTCAAGGCACTGACACAAAGCTGGAGGCAGGAAATGAGTATCTGAGAAGCCTCCAAGCTTCCCCCTCTCGTGGGATCCACACCAGCACAGGAGCACTTTCTAGGT i canFam3.chr9 C 0 C 0 a score=69687.000000 s hg38.chr17_JH159146v1_alt 60476 17 + 278131 ATCCTTTGGATCCTTTA s panTro4.chr17 66180345 17 - 82630442 ATCCTTTGGATCCTTTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24710129 17 - 73212453 ATCCTTTGGATCCTTTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47930671 17 - 81552678 ATCCTTTGGATCCTTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53041846 17 + 80904711 ATCCTTTGGATCCTTTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52564701 17 + 80997621 ATCCTTTGGATCCTTTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47609706 17 + 74645514 ATCCTTTGGATCCTTTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9876025 17 - 75148670 ATCCTTTGGATCCTTTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112721950 17 + 159171411 ATCCTTTGAATCCTTTA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39289957 17 - 61074082 ATCTTTTGGATCCTTTA i canFam3.chr9 C 0 C 0 e mm10.chr11 99466878 891 + 122082543 I a score=879349.000000 s hg38.chr17_JH159146v1_alt 60493 318 + 278131 AGAGTAGCACA-ggcggggcgcgacgtttcacggctgtaatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagatcgagaccatcctggcctacgtggtgaaaccccgtctctactaaagatacaaaaattagctaggcatggtgtcatgtgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcgagccgagatcgtgacactgcactccagcctggcgacagagcgaaactctgtctcaaacaaacaaataaataaataaataaaG s panTro4.chr17 66180362 318 - 82630442 AGAGTAGCACA-ggcggggcgcgacgtttcacggctgtaatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagatcgagaccatcctggcctacgtggtgaaaccccgtctctactaaagatacaaaaattagctgggcatggtgtcatgtgcctgtagtcccaactactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcgagccgagatcgtgacactgcattccagcctggcgacagagcgaaactctgtctcaaacaaataaataaataaataaataaaG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24710146 318 - 73212453 AGAGTAGCACA-ggccaggcgtggtgtctcatggctgtgatcccaacactttggggaggccaaggcgggcggatcacggggtcaagagatcgagaccatcccggcctacatggtgaaacccc-tctctactaaagatacaaaaattagctgggcatggtggcatgtgcctgtagtcgcagctactcgtgaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcgagccgagatcgtgccactgcactctagcctggcgacagagcgaaactctgtctcaaacaaataaataaataaataaataaaG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47930688 310 - 81552678 GGAGTAGCACA-ggccaggagcggtgtctcacgactgtaatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagatcgagacaatcctggcctacatggtgaaaccccgtctctactaaagataaaaaaattagctggacatggtggcatgtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaaactgggaggcagaggttgcagcgagccgagattgtgccactgcactccagcctggcgacagagtgaaactctgtct--------taaataaataaataaataaaT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53041863 309 + 80904711 ATAATAGCACAGggccaggcgcggtgtcttatggctataatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagattgagactatcctggcctacatggtaaaaccccgtctctactaaagatacaaaaattagctgggcatggtggcatgtgcctgtagttccagctgctcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcgagccgaaattgtgccactgcactccagcctggcgacagagtgagattctgtctc----------aaaaaaaaaaaaaaaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52564718 311 + 80997621 ATAATAGCACA-ggccaggcgcggtgtctcacagctataatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagattgagactatcctggcctacatggtaaaaccccgtctctactaaagatacaaaaattagctgggcatggtggcgtgtgcctgtagttccagctgctcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcgagccgaaattgtgccactgcactccagcctggcgacagagtgagattctgtctc-------aaaaaaaaaaaaaaaaaaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47609723 310 + 74645514 ATAGTagcaca-ggccaggcgcggtgtctcacggctataatcccaacacttt-gggaggccgaggcgggcggatcacggggtcaagagatcgagactatcctggcctacatggtaaaaccccgtctctactaaagatacaaaaattagctgggcatggtggcatgtgcctgtagttccagctgctcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagcaagccgaaattgtgctactgcactccagcctggcgacagagtgagattctgtctc--------aaaaaaaaaaaaaaaaaaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9876042 318 - 75148670 AGAGTAGCACA-ggccaggcgcggtgtctcacggctataatcccagcactct-gggaggccgaggcgggcggatcacggggtcaagagatcgagactatcctggcctacatggtaaaaccccgtctctactaaagatacaaaaattagctgggcatggtggcatgtgcctgtagtcccagctgctcgggaggctgaggcaagagaatcacttgaacctgggaggcagaggttgcagtgagccgaaatcgtgccactgcactccagcctggcgacagagtgagattctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112721967 307 + 159171411 AGAGTAGCAGA-ggccaggcgcggtggctcacacctgtaatcccagcacttc-aggaggccgaggcgagtggatcacgaggtcaagagatggagaccatcctggccaacatggtgaaaccccgtctctactaaaagttcaa--------tgggcgtggtggcacgcacctgtagtccctgctactcgggaggcggaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagctaagatcgcatcactatactccagcctggaaacagagcgagaccccatctc---aaaaaagaaaagaaaaaaaaaaaaG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39289974 0 - 61074082 C e mm10.chr11 99466878 891 + 122082543 I a score=136041.000000 s hg38.chr17_JH159146v1_alt 60811 45 + 278131 AGTAGCAGATACCACTTATAAAGTTTTA-TTATAAAGAA----------TTATTGG s panTro4.chr17 66180680 45 - 82630442 AGTAGCAGATACCACTTATAAAGTTTTA-TTATAAAGAA----------TTATTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24710464 45 - 73212453 AGTAGCATATACCACTTATAAAGTTTTA-TTATAAAGAA----------TTATTGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47930998 45 - 81552678 AGTAGCAGATACCACTTATGAAGTTTTA-TTATAAAGGA----------TTATTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53042172 45 + 80904711 GGTAGCAGATACCACTTGAAAACTTTTA-TTATAAAGCA----------TTATTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52565029 45 + 80997621 GGTAGCAGATACCACTTGAAAACTTTTA-TTATAAAGCA----------TTATTGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47610033 55 + 74645514 ggtagcagaTACCACTTGGaaactttta-ttataaaggattatTGGAGTTTATTGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9876360 45 - 75148670 aGTAGCAGATACCACTTGGAAACTTTTA-TTATAAAGGA----------TTATTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112722274 45 + 159171411 AGTAGCAGAGTTCACTTAAAAAGTTTTA-TTATAAAGGA----------TTATTGG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39289974 45 - 61074082 AGTGGTAGA-GCCACTTAGAAAGTTTTATTTCTAGAGGA----------TTATGGG i canFam3.chr9 C 0 C 0 e mm10.chr11 99466878 891 + 122082543 I a score=241875.000000 s hg38.chr17_JH159146v1_alt 60856 83 + 278131 AGTTGGCTATGAATTCTCCTCCTTACTCACGTCTGGTGGGGCAAAACGGGGAGGATCAGA----------TACTATGAAGACAAAGATACTGG s panTro4.chr17 66180725 83 - 82630442 AGTTGGCTATGAATTCTCCTCCTTACTCACCTCTGGTGGGGCAAAACGGGGAGGATCAGA----------TACTATGAAGATAAAGATACTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24710509 83 - 73212453 AGTTGGCTATGAATTATCCTCCTTACTCACGTCTGGTGGGGCAAAACAGGGAGGATCAGA----------TACTATGAAGATAAAGATACTGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47931043 83 - 81552678 AGTTGGCTATGAATTCTCCTCCTTACTCACGTCTGGTGGGGCAAAACAGGGAGGATCAGA----------TACTATGAAGATAAAGATACTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53042217 74 + 80904711 AGTTGGCTATGAATT---CTCCTTACTCACGTCTGGTGGGGCAAAACGGCGAGGATCAGA----------TACCACG------AAGATACTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52565074 77 + 80997621 AGTTGGCTATGAATTCTCCTCCTTACTCACGTCTGGTGGGGCAAAACGGCGAGGATCAGA----------TACCACG------AAGATACTGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47610088 77 + 74645514 AGTTAGCTATGAATTCTCCTCCTTACTCACGTCTGGTGGGGCAAAACGGCGAGGATCAGA----------TACCACG------AAGATACTGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9876405 77 - 75148670 AGTTGGCTATGAATTCTCCTCCTTACTCATGTCTGGTGGGGCAAAACGGCAAGGATCAGG----------TACCATG------AAGATACTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112722319 74 + 159171411 GGTTGGCTATGAATT---CTCCTTACTCACATCTGATGGGGAAAAATGGGGAGGATCAGA----------TACCACA------AAGATACTGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99467769 71 + 122082543 AGACAGCTCTGAGTTCCAACCCTTATATACTTGCCCTGGAGTA----------GATCAGACTC------CCACCAGG------AAGACATGAG i mm10.chr11 I 891 C 0 s canFam3.chr9 39290019 87 - 61074082 AATGGGCTCTGAATTCCCCCCCTTACATGCTTCTGGTGGGTGAGGTGGGGGAGGGCCCAATTCCAAACACTACCAGG------GAGAAACTGG i canFam3.chr9 C 0 I 220 a score=5315227.000000 s hg38.chr17_JH159146v1_alt 60939 1443 + 278131 AAATAGATCAAAGCCTTGAATTCCCAGCCCCAGACTCTACCCACCATGAT-CCCTACCTGCAGGGGTCT---GGGTTCCTCTTGCCCAGCCTGCTCAATCTCTGACCCCCTAGCATGGGTCTCTGGCTTGCTCAGAGGTGCAGGCTCCCAGCTCCCCTTCTCCAGTCGCCTGAAGAC-TCAGTGGTTCCTCTCTGAAGGATGTAGTTTTAA-CCTTTGTTTGCTGTAAAAACATATAGCAGGCAAGTG---CTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGTGATGGGGA--GGGTCCGGCTGTGGATATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTAAGACAGAGCCTGGTCTTGGCCACTCTGATATCTGGCTGACTGAGAGACAGTGTGGAT-GGGTGGAAGAGGGCAGTCTTGCATGCTGTCATCTCCTCCCTAGGGCCCTATTGACCTTTGGTGGATCCACACTTGAGGTGTGGACAGAGGAGAGAGACA---GAGAATGCCTTGTCTCCTGTAGAAAGGCCTCTTCTGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GACTGAGAGAGAAATATAAAAAGCCATGTTCCCACAGTAAGCTCTCCTACCACTGGCTCAGCCTCCTGTCCATTTGGGAATGATTAGAGATGCTACCTCCTTCCTCAGGGCTGCCAA-CTA-CAAGTGCGCAGCCTCCCCCAACTCTTAGCACTGTAGCCAGGTGTAGTTATAAATAAACGTTGGGGTGAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----ATAAATACGTAAATTAGATATTCCCTGGTTTCCCCAAACA-CTGGTAGTAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACGGCCCAGGTGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCGTAGCAAACCTGCCATTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCATACCGGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGAACGGGGCATAAG------AGTTACGGGTGGCTTTATGAAGCTTTTGTTGAGTGTGG-------------GAGGGTGGAAAGAGCTTTACTGAAGAGACATGT----TTTCTGTTTCCCAGTTCAAATCAATTTCCTTATCATGATACAAGCAAGGGTAATAATTATTAGGATTATTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCAAAGGGACTCTTTTGTATATTGTAATTTCCTTCCCTAAAGTTCT---------AGCTTCCTTATTTTGTCTTCCTAATAGTGACTCACACCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCACTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT s panTro4.chr17 66180808 1447 - 82630442 AAATAGATCAAAGCCATGAATTCCCAGCCCCAGACTCTACCCACCATGAT-CCCTACCTGCAGGGGTCT---GGGTTCCTCTTGCCCAGCCTGCTCAATCTCTGACCCCCTAGGATGGGTCTCTGGCTTGCTCAGAGGTGCAGGCTCCCCGCTCCCCTTTGCCAGTCGCCTGAAGAC-TCAGGGGTTCCTCTCTGAAGGATGTAGTTTTAA-CCTTTGTTTGCTGTAAAAACATATAGCAGGCAAGTG---CTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGTGATGGGGA--GGGTCCGGCTGTGGATATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTAAGACAGAGCCTGGTCTTGGCCACTCTGATATCTGGCTGACTGAGAGACAGTGTGGAT-GGGTGGAAGAGAGCAGTCTTGCGTGCTGTCATCTCCTCCCTAGGGCCCTATTGACCTTTGGTGGATCCACACTTGAGGTGTGGACAGAGGAGAGAGACA---GAGAATGCCTTGTCTCCTGTAGAAAGGCCTCTTCTGGAAACTTCCAAGCACCTAGCATTGTAGGAGAAGAATAGGA--GACTGAGAGAGAAATATAAAAAGCCATGTTCCCACAGTAAGATCTCCTACCACTGGCTCAGCCTCCTGTCCATTTGGGAATGATTAGAGATGCTACCTCCTTCCTCAGGGCTGCCAA-CTA-CAAGTGCGCAGCCTCCCCCACCTCTTAGCACTGTAGCCAGGTGTAGTTATAAATAAACGTTGGGGTGAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----ACAAATATGTCAATTAGATATTCCCTGGTTTCCCCAAACA-CTGGTAGTAATGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTACTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGGTGTGATGTCTACAGAGCCCCACATTAAGGC-GCTTGCATAGCAAACCTGCCATTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCATACCGGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGAACGGGGCATAAG------AGTTACGGGTGGCTTTATGAAGCTTTTGTTGAGTGTGT-------------GAGGGTGGAAAGAGCTTTACTGAAGAGACATGTTTTCTTTCTGTTTCCCAGTTCAAATCAATTTCCTTATCATGATACAAGCAAGGGTAATAATTATTAGGATTATTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCAAAGGGACTCTTTTGTATATTGTAATTTCCTTCCCTGAAGTTCT---------AGCTTCCTTATTTTGTCTCCCTAATAGTGACTCACACCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCACTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24710592 1450 - 73212453 AAATAGATCAAAGCCTTGAACCCCCAGCCGCAGACTCTACCCACCATGATCCCCTACCTGCAGGTGTCT---GGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGACCCCCTAGGATGGGTCTCTGGCTTGCTCAGAGGTGTAGGCTCCCAGAACCCCTTCACCAGTCGCCTGAAAAC-TCAGGGGTTCCTCTCTGAAGGATGTAGTTTTAA-CCTTTGTTTGCTGTAAAAACATATAGCAGGCAGGTGCTTCTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGTGATGGAGA--GGGGCCGGCTGTGGATATCTGCTGTGCTAAGACAGCCACAGTATGGTCTAAGACAGGGCCTGATCTTGGCGACTCTGATGTCTGGCTGACTGAGAGACAGTGTGGGT-GGATGGAAGAGAGAAGCCTTGCGTGCTGTCATCTCCTCCCTAGGGCCCTATTGACCTTTGGTGGATCCACACTTGAGGTGTGGAC-GAGGAGAGAGACA---GGGAATGTCTTGTCTCCTGTAGAAAGGCCTCTTCTGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GACTGAGAGAGAAATATAAAAAGCCATGTTCCCACAATAAGATCTCCTACCACTGGCTCAGCCTCCTGTCCATATGGTAATGATTAGAGATGCTACCTCCTTCCTCAGGGCTGCCAA-CTA-CAAGTGCACAGCCTCTCCCAACTCTTAGCACCGTAGCCAGGTGTAGTTATAAATAAACTTTGGGGTGAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----AAAAATACATAAATTAGATATTCCCTGGTTTTCCCAAACA-CTGGTAGTAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGGTGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCGTAGCAAACCTGCCATTCAGGTAATGATGGCCGCCCTCTGGAAAAACAAGCTGAGACCACACCGGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTTGGTGGAACAGGGCATAAG------AGTTACGGGTGGCTTTATGAACCTTTTGTTGAGTGTGG-------------GAGGGTGGAAACAGCTTTACTGAAGAGACATGTTTTCTTTCTGTTTCCCAGTTCAAATCAATTTCCTTATCATGATACAAGCAAGGGTAATAATTATTAGGATTACTTACCATGATTATGTTTGACAGGAATTGCAGTTGGGCAAAGGGACTGTTTTATATATTTTAATTTCCTTCCCTGAAGTTCT---------AGCTTCCTTATTTTGTCTTCCTAATAGTGACTCACACTGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCACTGGTTCTTTATTCCAACTCCATCCATTCCAATACA--AATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47931126 1449 - 81552678 AAATAGATCAAAGCCTTGAACTGCTAGCCCCAGACTCTACCCACCGTGAT-CCCTACCTGCAGGTGTCT--GGGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGAACCCCTAGGATGTGTCTCTGGCTTGCTCAGAGGTGCAGGCTCCCAGCTCCCCTTCGCCAGTCGCCTGAAGAC-TCAGGGGTTCCTCTCTGAAGGATGTAGTTTTAA-CCTTTGTTTGCTGTAAAAACATATAGCAGGCAGGGG---CTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGTGATGGGGA-GGGGTCTGACTGTGGATATCTGCTGTGCTAAGGCAGCCACAGTGTGGTCTAAGACAGAGCCTGGTCTTGGCCACTCTGATATCTGGCTGACTGAGAGACAGTGTGGGT-GGGTGGAAGAGAGAAGCCTTGCGTGCTGTCATCTCCTCCCTAGGGCCCTATTGACCTTTGGTGGATCCACACTTGAGGTGTGGACAGAGGAGAGAGACA---GAGAATGCCTTGTGTCCTGTAGAAAGGCCTCTTCCAGACACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GACTGAGAGAGAAATATAAAAAGCTATATTCCCACAATAAGATCTCCTACCACTGGCTCAGCTTCCCGTCCGTATGGGAATGATGAGAGATGCTACCTCCTTCCTCAGGGCTGCCAA-CGA-CAAGTGCACAGCCTCCCCCAACTCTTAGCACCGTAGCCAGGTGTAGTTATAAATAAACGTTGGGGTGAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----AAAAATACGTAAGTTAGATATTCCCTGGTTTCCCCAAACA-CTGGTAGTAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGGTGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCATAGCAAACCTGCCATTCAGGTAGTGACGGCTGCCCTCTGGAAAAACAAGCTGAGACCACACTGGGGAAGGC----C--TTGGATACTTGAGAAGGCTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGAACGGGGCATAAG------AGTTACAGGTGGCTTTATGAAGCTTTTGTTGAATGTGG-------------GAGGGTGGAAAGAGCTTTACTGAAGACACATGTTTTCTTTCTGTTTCCCAGTTCAAATCAATTTCCTTATCATGATACAAGCAAAGGTAATAATTATTAGGATTACTTACCATGATTATGGGTGACAGGAATTGCAGTTCGGCAAAGGGACTCTTTTGTATATTTTAACTTCCTTCTCTGAAGTTCT---------AGCTTCCTTATTTTGTCTTCCTAATAGTGACTCACACCACAGTAGGCAGGAAGCGGGTATTTAATGACCACTTCTTCATTGGTTCTTTACTCCAACTCCATTCATTCCAATACA--AATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53042291 1445 + 80904711 AAGTAGATCAAAGCCTTGAACTCCCAGTTGCAGACTCTACCTACCATGAT-CCCTACCTGCAGGTGTCT--GGGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGAACCCCTAGGATGGGTCTCTGGCTTGTTCAGAGGTGCCAGCTCCCAGCTCCCCTTCTCCAGTCGCCTGAGGTC-TCAGGGGTGCCTCTCTGAAGAATATAGTTTTAA-ACTTTGTTTGCTGTAAAAAC--ATAGCAGGCAGGTG---CTTGTCACAAGGAGACTTATTTCTTCCTTCTGCTTCATGCGATGGGGA-GGGGTCTGATTGTGGACATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTGAGACAGAGCCTGGTCTTGGCCACTCTGACATCTGGCTGACTGAGAGACAGCGTGGGT-GGGTGGAAGAGAGAAGGTTTGCGTGCTGTCATCTCCTCCTTAGGGCCCTATTGACCTTTGGTGGATCCGCACTTGAGGTGTCGACAGAGGAGAGAGACA---GAGAATGCCTTGTCTCCTGTAGAAAGGCCTCTTTCGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GATTGAGAGAGAAATATAAAAAACCATGTTCCCACAATAAGATCTCCTACCACTGGCTCAGCCTTCTGTCCATATGGGAATGATTAGAAATGCTACCTCCTTCCCCAGGGCTGCCAG-CTA-CAAGTGTGCAGCCTCCCCCAACTCTTAGCACTGCAGCCAGGTGTAGTTATAAGTAAACTTTGGGGTAAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----AAAAATACATAAATTAGATACTCTCTGGTTTCCCCAAACA-CTGGTAGCAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGATGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCGTAGCAAACCTGCCGTTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCACACCGGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGATCAGGGCATGAG------AGTTACGGGCGGCTTTATGAAGCTTTTGTGGAGCGTGG-------------GAGAGTGGAAAGAGCTTTACTGAAGGGACATGTTTTCTT--TATTTCCCAGCTCAAATCAATTTCCTTATCATGATACAAGCAAAGGTAATAATTATTAGGATTACTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCACAGGGACTCTTTTGTATATTTTAATTTCCTTCCCTGAAGTTCT---------AGCTTCCTTACTTCATCTTCCTGATAGTGACTCACATCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCATTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52565151 1445 + 80997621 AAGTAGATCAAAGCCTTGAACTCCCAGTTGCAGACTCTACCTACCATGAT-CCCTACCTGCAGGTGTCT--GGGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGAACCCCTAGGATGGGTCTCTGGCTTGTTCAGAGGTGCCAGCTCCCAGCTCCCCTTCTCCAGTCGCCTGAGGTC-TCAGGGGTGCCTCTCTGAAGAATATAGTTTTAA-ACTTTGTTTGCTGTAAAAAC--ATAGCAGGCAGGTG---CTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGCGATGGGGA-GGGGTCTGATTGTGGACATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTGAGACAGAGCCTGGTCTTGGCCACTCTGACATCTGGCTGACTGAGAGACAGCGTGGGT-GGGTGGAAGAGAGAAGGTTTGCGTGCTGTCATCTCCTCCTTAGGGCCCTATTGACCTTTGGTGGATCCGCACTTGAGGTGTCGACAGAGGAGAGAGACA---GAGAATGCCTTGTCTCCTGTAGAAAGGCCTCTTTCGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GATTGAAAGAGAAATATAAAAAACCATGTTCCCACAATAAGATCTCCTACCACTGGCTCAGCCTTCTGTCCATATGGGAATGATTAGAAATGCTACCTCCTTCCCCAGGGCTGCCAG-CTA-CAAGTGTGCAGCCTCCCCCAACTCTTAGCACTGCAGCCAGGTGTAGTTATAAGTAAACTTTGGGGTAAC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGATTAACT-----AAAAATACATAAATTAGATATTCTCTGGTTTCCCCAAACA-CTGGTAGCAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGATGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCGTAGCAAACCTGCCGTTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCACACCAGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGATCAGGGCATGAG------AGTTACGGGCGGCTTTATGAAGCTTTTGTGGAGCGTGG-------------GAGAGTGGACAGAGCTTTACTGAAGGGACATGTTTTCTT--TATTTCCCAGCTCAAATCAATTTCCTTATCATGATACAAGCAAAGGTAATAATTATTAGGATTACTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCACAGGGACTCTTTTGTATATTTTAATTTCCTTCCCTGAAGTTCT---------AGCTTCCTTACTTCGTCTTCCTGATAGTGACTCACATCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCATTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47610165 1445 + 74645514 AAGTAGATCAAAGCCTTGAACTCCCAGTTGCAGACTCTACCTACCATGAT-CCTTACCTGCAGGTGTCT--GGGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGAACCCCTAGGATGGGTCTCTGGCTTGTTCAGAGGTGCAAGCTCCCAGCTCCCCTTCTCCAGTCGCCTGAGGTC-TCAGGGGTGCCTCTCTGAAGGATATAGTTTTAA-ACTTTGTTTGCTGTAAAAAC--ATAGCAGGCAGGTG---CTTGTCACAAGGGGacttatttcttccttctgcttcatGCGATGGGGA-GGGGTCTGATTGCGGACATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTGAGACAGAGCCTGGTCTTGGCCACTCTGACATCTGGCTGACTGAGAGACAGCGTGGGT-GGGTGGAAGAGAGAAGGTTTGCGTGCTGTCATCTCCTCCTTAGGGCCCTATTGACCTTTGGTGGATCCGCACTTGAGGTGTcgacagaggagagagaca---gggaatgCCTTGTCTCCTGTAGAAAGGCCTCTTTCGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GATtgagagagaaatataaaaaaccaTGTTCCCACAATAAGATCTCCTACCACTGGCTCAGCCTTCTGTCCATATGGGAATGGTTAGAAATGCTACATCCTTTCCCAGGGCTGCCAG-CTA-CAAGTGTGCAGCCTCCCCCAACTCTTAGCACTGCAGCCAGGTGTAGTTATAAGTAAACTTTGGGGTAGC--TTATCCTTGTGTGATGTGTGTAAGTTAGCCCTTTCTTTGattaact-----aaaaatacataaattagataTTCTCTGGTTTCCCCAAACA-CTGGTAGCAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGATGTGATGTCTACAAAGCCCCACATTAAGGC-GCTTGCGTAGCAAACCTGCCATTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCACACCGGGGAAGGC----C--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGATCGGGGCATAAG------AGTTACGGGTGGCTTTATGAAGCTTTTGTTGAGTGTGG-------------GAGAGTGGAAAGAGCTTTACTGAAGagacatgttttctt--tatttcccagCTCAAATCAATTTCCTTATCATGATACAAGCAAAGGTAATAATTATTAGGATTACTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCAAAGGGactcttttgtatattttaatttccttccctGAAGTTCT---------AGCTTCCTTACTTTGTCTTCCTGATAGTGACTCACGTCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCATTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9876482 1446 - 75148670 AAGTAGATCAAAGCCTTGAACTCCCAGTCGCAGACTCTACCCACCATGAT-CCCTACCTGCAGGTGTCT--GGGGTTCCTCTTGCCCAGCCTGCTCAGTCTCTGAACCCCTAGGATGGGTCTCTGGCTTGCTCAGAGGTATAAGCTCCCAGCTCCCCTTCTCCAGTCGCCTGAGGTC-TCAGGGGTGCCTCTCTGAAGGATATAGTTTTAA-ACTTTGTTTGCTGTAAAAACATATAGCAGGCAGGTG---CTTGTCACAAGGGGACTTATTTCTTCCTTCTGCTTCATGCGATGGGGA-GGGGTCTGATTGTGGATATCTGCTGTGCTAAGACAGCCACAGTGTGGTCTGAGACAGAGCCTGGTCTTGGCCACTCTGACATCTGGCTGACTGAGAGACAGCGTGAGT-GGGTGGAAGAGAGAAGGTTTGCGTGCTGTCATCTCCTCCTTAGGGCCCTATTGACTTTTGGTGGATCCGCACTTGAGGTGTCGACAGAGGAGAGAGACA---GAGAATGCCTTGTCTCCTGTAGAAAGGCCTCTTTCGGAAACTTCCAAGCACCTAACATTGTAGGAGGAGAATAGGA--GATTGAGAGAG-AATATAAAAAGCCATGTTCCCACAATAAGATCTCCTACCACTGGCTCAGCCTTCTGTCCATATGGGAATGATTAGAAATGCTACCTCCTTCCCCAGGGCTGTCAG-CTA-CAAGTGTGCAGCCTCCCCCGACTCTTAGCACTGCCGCCAGGTGTAGTTATAAGTAAAGTTTGGGGTAAC--TTATACTTGTGTGATGTGTGTAAGTTAGCCCTTGCTTTGATTAACT-----AAAAATACATAAATTAGATATTCTCTGGTTTCCCCAAACA-CTGGTAGCAGTGAA-------------TTTTCTTGGAATGCCCTTCTTTGGTCTGCTGGCTGATTATTATTTTCAGACGACACTAATGACAGCCCAGATGTGATGTCTACAAAGCCCCACATTAAGGT-GCTTGCGTAGCAAACCTGCCATTCAGGTAATGACGGCCGCCCTCTGGAAAAACAAGCTGAGACCACACCGGGGAAGGC----T--TTGGATACTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTTGACTCGGTGGATCGGGGCATAAG------AGTTACGGGTGGCTTTATGAAGCTTTTGTTGAGTGTGG-------------GAGGGTGGAAAGAGTTTTACTGAAGAGACATGTTTTCTT--TATTTCCCAGCTCAAATCAATTTCCTTATCATGATACAAGCAAATGTAATAATTATTAGGATTACTTACCATGATTATGGGTGACAGGAATTGCAGTTGGGCAAAGGGACTCTTTTGTATATTTTAATTTCCTTCCCTGAAGTTCT---------AGCTTCCTTGTTTTGTCTTCCTGATAGTGACTCACATCGCAGTAGGCAGGAAGCAGGTATTTAATGACCACTTCTTCATTGGTTCTTTATTCCAACTCCATTCATTCCAATACA--AATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112722393 1425 + 159171411 AAGAAGATCAAAGCCTTGAACTCCCAGCCCCAGACTTTATCCACCATGAT-CCCTACCTGCAGGTGTCT-GGGGGTTCCTCTTGCCCAGGCTGCTCAGTCTCTGAACCCCTAGGATGGGTCTCTGGCTTGCTCAGAGGTGCAAGCTCCCAGCTCCCCTTTGCCAGTTGTCTGAAGAC-TCAGGGGTACCTCTCTGGAGGATGTAGTTTTAA-CCTTTGTCTGCTGT-------------GGGCAGGTG---CTTGTCACAAGGGGACTCATTTCTTCCTTCTGCTTCATGCTATGGGGGGGGGGACTGACTCTAGATATCTGCTGTGCTAAGACAGGCATTGTGTGGTCTGAGTCAGAGCCTGGTCTTGGTCACTCTGATCTCTGGCTGCCTGAGAGACAGTGTGGTT-AGGTGGAAAAGAGAAGACTTGCATGCTATCATCTCCTCCCTAGGGCCCTATTGACCTTTGGTGGATCCACACTGAAGGT-TGGGCAGAGGAGAGAGACA---GATGATGGCTTGTCTCTTGTAGAAAGGCCTCTTCTGGAAAGTTCCATGCACCTAACATTGTAGGGGGAGAGCAGGA--GATGGAGAGAGAAATGCAAAAAGCCATGTTCCCACACTAAAATCTC---CCATTGGCTCAGCCTCCTATCCATAAGGGAATGATGGGAGATGCTACCTGCTTCCCCAGGGCTGCCAA-CTA-CAAGTGCACAGCCTCCCCCAGCTCTCAGCGCTGTAGCCGGGCATAGTTACAAATAGACTCTGGGGTGAC--CTATCCTTGTGTGGTGTGTGGAAGTTAGGCCTTTCTTTGAGGAACT-----AAAAACACATCAATTAGCTATTCCCTGGTTTCCCCACACA-CTGGTAGTAGTGGA-------------TTTTCTTGGAATGTCCTTCTTTGGTCTGCCGGCTGATTATTATTTTCAGAGGACGCTAATGACAGCCCAGGTGTGATGTCTGCAAAGCCCTATGTTAAGGC-ACTTGCGTAGCAAACCTGCCATTCAGGTAATGACGGCTGCCCTCTGGAAAAATAAGCTGAGGCCACAC-GGGGAAGGC----C--CTGGATGCTTGAGAAGGGTGTGAG-------G-CCAGTCACAGGAGTCGACTCGGTGGAGTAGGGCATGAG------AGTTACAAGTGGCTTTATGAAGTTTTTGTTGAGTGTGG-------------GAGGGTGGAAAGAGCTTTACTGAAGAGACATGTTGTTTCT-TGTTTCCCAGCTCAAATCAATTTCCTTATCATAATACAAGCAAAGGTAATAATTATTAGGATCACTTACCATGATTATGGATGACAGGAATTGCAGTTGGGCAAAGGGACTCTTTTGTGTATTTAAATTTCCTTCTCTGAAGTTTT---------GGCATCCTTATTTTGTCTTTGTAACAGTGACTCACACCACAGTAGGCGTGAAGCAGGGATTGAATGACCACTTCTTCATGGGT-------TCCAACTCCACTCGTTCCAATACC--AATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99467840 1317 + 122082543 AGGTGGAT--AAACTTTCAGCCCCCAATGCCAA------------------CCCTG------------T---GAGTCCCTTCTCACCA--------AGGCTCTGGACCCT--GGACGGGGCTCCGGCTTTTTGAGACATGTAGGTTCCCAACTCCTCCTGGCCATTTGGGTGATGAC-TGAGCAGGGCCTGTCTAGAAGATGTAGTTTTAG-CTTGTTACTGTTGTAGAGATAGTTAGTGGACCGAGA---TTCGTTAC-TGGGGCCTTATTTCTACCTTCTGCTCTGTGTGATGGGGGTATGGACCGATACTAGCCATCTGCTATTCTAAGACAATCTCTGTGTAG--TGGAATGCAGTCAGGTCTTA--------TGTCTCTAGCTGGCTGAGATTC--TATGGAT-GGGGTGGAATACAAAGACTTGAACGCTGTCATTTATTCTCCA------------------------------------------------------------------ACCTTG--TCCTACTGAAAACCCTCT------GACTATCTAATACC--ACCT----GGAGAAGGGTAGGA--GAGGGAGCAAGAAGT-TCAGTATTCACGTGGCTACAATAAGGCTACCTGCTATTAGCTTGGCCTCCGGCATCTGCAGTGATGATTAGACAC----CTACCTTCTACACAGCTGCCTG-CCCTTAAGTGTCCTACATTCCCCAACTCTCAGTCCGGTAGCCAAGTGTATTCAT---CAGATTTTGGGTCACT--GTCTTTCTGTGTATTAGAAATAAACCATCCCACTCTTTGATCAACTGA---AAAAAGAAATAAGT-------------------CCAAACATTTTGCAACAATGAGGTTCTTCTTTTTTTTTTTTTGGAATGTTCCTCTTTGGTCTGTCAGCTGATTATTATTTTCCGAGGACACTAATAACAGCCCAGAAGTGGTGTCTGCAAAACTC-ACATTAAGGCAGCTTGCGTGGCAAACCTGCTCTTCAGGTATGGAGCGAAGTTGGCTGGGTAAACAAGCTGAGTCTCGCTGGGGGATGGCAGAGC--CTGGATGTTTGGGAAGGGTGTAAGGTGTGATG-CCAGCCACGGCGGCTGACGTGGTAGAACTGGGTGCGTGGTCACAGGTCACAGGTAGTCTTATGTAGGTTTTGTTGAGTGTGGGAGACGAATTCAAGAGGGTGGAAGGAGTTTTATTGAGCAGACAAGCTTGCTGTGTTTCTCCCAGCGTGAATAGTTTTCCTTATCACGATACTGGCAAAGGTAGTAATTATTAGGATGAC--ATCATGATGGTAGGTGACAGGAATT------------AGGGACTGTTTCGTGTATTTTGATTTCCTTCTCTGAA----------------CTTCCTTATTTTGTCCTCCTAATAGTGACTGCCTCTGTAGGAGGCATGAGGTGGGTGCTTAGTAGCTATTTCTCTGTGGGCTTTTTATTCCGACTGTACTTGTTTCAATACA--AACT i mm10.chr11 C 0 I 1187 s canFam3.chr9 39290326 1432 - 61074082 aaaaaaaACAAAGGCTTGAACT--CAGCTCCTGACCCTACCCTCCATCATTCCCCCACTTCAGGTCTTCTGTGGGTTCCTCCCAACCCACCTGCCCATTGTCTGGGCCCC--ATATGGGTGTCTGACATGCCCAGAGGTGCAGGCTCCCAGTTTCCTTCTGCCAGTTGCTGGAAGACATTGCAGGCACCTTTCTGGAGGCTGTGGTTTTAACCCTTTGTGGGCTGTAAAAATAGTTAGCAGGCCTGTG---GTTGTCCCTGGAGGACTTAT-------TTCTGCTTCCTATGTTGGAGGAGAGAACAGACTCTGGACATCTACTATTTGAAGACAGCCTCAGTATGGTCTGA-ACAGAATCTAGTCCCAGTCACTCTGAGCTCTGGCTGGCCCAGGAACAGTGTGGCTGGGGTGGAAGAGGGAAGACTTGAGTGCTGTCATCTCTCCCTTG----CCTATTGGCCCTAGGTGCATTCATACTAGAGGTGGGGGCAAAGGAGGAAGACAGATGATGATGCCTTGTCTCCTGTGCAGAGGCTTCTTCCAG-AATTTCTAACCACCTAACATTGTAGAGGGAAGAAGAGAGTGGCAGAGTGTGAAATGGAATTACCCATGTCTACATACCA--------------TGGCTCAGCGCCTTGTCCATGCAGTAATGATTAAAAGTGCTACCTCCTCCCCCAGAGCTGCCAGCCCA-TAGGTATGTAACCCCTCCCAACTC--AGCATTGTAG-CAAGTGTAGTT---TGTAAACTTTTAGGTGATCATTATCCTTGTGT-------GTATGCTAGCCTATTCTTTGAATAACTGAAAGAGAAATACAT---TTAGATTTTCCATGGCTTCCCCAAACA-GTTGAATTAATGAG-------------TTTTCTTGGAATGCCCTTTTTTGGTCTGCCAGCTGATTATTATTTTCAGAGGACACTAATGACAACCCAGGCGTGATGTCTACAAAGCCCTACATTAAGGCAGCTTGCATTGCAAACCTGCCATTCAGGTAATGACTGCTGCCCTCTGGAAAAACAAGCTG-GGCCTCATGAAGGAAGGC----CATGTGGATACTTGAGAAGGGTGTGAG-------GCCCAGTCATAGGTGTTGACTTGTTGGAAATGGGCAGAAG------GGTCATGGATGATTTTAAGAAGTTTTTGTTGAGTGCGGAAGAAAATTTCAAGAGGACAGAAAGAGCTTTACTGGGGAGACATTCTTTCTTTTTGTTTC-----TCAACTCAATTTCCTTATCATAACAGCAGCAAACGT-GTAATTATTATGACTACTTACTATGATTATGGGTGACAGGAATTACAGTTGGGCAAAGGGACGGTTTTGTATATTTTAATTTCCTTCTCAGAAGTTCTGACTTCATGAACTTCCTTATTTTGTCTTCCTAATAGTGCCTGGTTTCATAGTAGACATATGTTAGAAGCTTAATAAATACTTCCTGACTGGTTCTTAGTTCCAGCTC-----------ATACATGAATT i canFam3.chr9 I 220 C 0 a score=86050.000000 s hg38.chr17_JH159146v1_alt 62382 22 + 278131 TCTTGAAAACAAAGAATAATGA s panTro4.chr17 66182255 22 - 82630442 TCTTGAAAACAAAGAATAATGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712042 22 - 73212453 TCTTGAAAACAAAGAATAATGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932575 22 - 81552678 TCTTGAAAACAAAGAATAATGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53043736 22 + 80904711 TCTTGAAAACAAAGAACAATGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52566596 22 + 80997621 TCTTGAAAACAAAGAACAATGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47611610 22 + 74645514 Tcttgaaaacaaagaataatga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9877928 22 - 75148670 TCTTGAAAACAAAGAATAATGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112723818 22 + 159171411 TCTTGAAAACAAAGACTAATGA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39291758 22 - 61074082 TCTTGAAAACAAAGAATGATAA i canFam3.chr9 C 0 I 444 e mm10.chr11 99469157 1187 + 122082543 I a score=3600.000000 s hg38.chr17_JH159146v1_alt 62404 1 + 278131 C s panTro4.chr17 66182277 1 - 82630442 C i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712064 1 - 73212453 C i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932597 1 - 81552678 C i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53043758 1 + 80904711 C i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52566618 1 + 80997621 C i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47611632 1 + 74645514 C i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9877950 1 - 75148670 C i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112723840 1 + 159171411 C i calJac3.chr5 C 0 C 0 e canFam3.chr9 39291780 444 - 61074082 I e mm10.chr11 99469157 1187 + 122082543 I a score=149316.000000 s hg38.chr17_JH159146v1_alt 62405 41 + 278131 ATCCATAACACAAATGAAAGCAGCCTGTCTAAGCTGATTTA s panTro4.chr17 66182278 41 - 82630442 ATCCATAACACAAATGAAAGCAGCCCGTCTAAGCTGATTTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712065 41 - 73212453 ATCCATAACACAAATGAAAGCAGCCCGTCTAAGCTGATTTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932598 41 - 81552678 ATCCATAACATAAATGAAAGCAGCCTGTCTAAGCTGATTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53043759 41 + 80904711 ATCCATAACACAAATGAAAGCAGCCCGTCTAAGCTGATTTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52566619 41 + 80997621 ATCCATAACACAAATGAAAGCAGCCCGTCTAAGCTGATTTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47611633 41 + 74645514 ATCCATAACACAAATGAAAGCAGCCCGTCTAAGCTGATTTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9877951 41 - 75148670 ATCCATAACACAAATGAAAGCAGCTCATCTAAGCTGATTTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112723841 41 + 159171411 ATCCATAACACAAATGAAAGCAGCCTGTCCAAGACGATTTA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39292224 41 - 61074082 ATTAATAACAATAATGAAAGCATCCAGTTCAAACTGGTTTA i canFam3.chr9 I 444 I 182 e mm10.chr11 99469157 1187 + 122082543 I a score=139014.000000 s hg38.chr17_JH159146v1_alt 62446 49 + 278131 ATTTAGTATGGAATAGGACGCAATTTCACAgttagagttattgttgttt-- s panTro4.chr17 66182319 49 - 82630442 ATTTAGTATGGAATAGGACACAATTTCACAGTTAGAGTTATTGTTGTTT-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712106 49 - 73212453 ATTTAGTATGGAATAGGATGCAATTTCACAGTTAGAGTTAATGTTGttt-- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932639 49 - 81552678 ATTTAGTATGGAATAGGATGCAATTTCACAGTTAGAGTTATTGTTGTTT-- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53043800 47 + 80904711 ATTTAGTATGGAATAGGACACAATTT--CAGTTAGAGTTACTGTTGTTT-- i rheMac3.chr16 C 0 I 1 s macFas5.chr16 52566660 49 + 80997621 ATTTAGTATGGAATAGGACGCAATTTCACAGTTAGAGTTACTGTTGTTT-- i macFas5.chr16 C 0 I 1 s papAnu2.chr16 47611674 49 + 74645514 ATTTAGTGTGGAATAGGACACAATTTCACAGTTAGagttactgttgttt-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9877992 49 - 75148670 ATTTAGTGTGGAATAGGACGCAATTTCACAGTTAGAGTTATTGTTGTTT-- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112723882 51 + 159171411 ATTTAGTATGGACTAAGACACAATTTCTCAGTTAGGGTTGTTGTTGTTGTT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39292265 182 - 61074082 I e mm10.chr11 99469157 1187 + 122082543 I a score=1011.000000 s hg38.chr17_JH159146v1_alt 62495 2 + 278131 at s panTro4.chr17 66182368 2 - 82630442 AT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712155 2 - 73212453 tt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932688 2 - 81552678 TT i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47611723 1 + 74645514 -t i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9878041 1 - 75148670 -T i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112723933 2 + 159171411 GT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39292265 182 - 61074082 I e mm10.chr11 99469157 1187 + 122082543 I e macFas5.chr16 52566709 1 + 80997621 I e rheMac3.chr16 53043847 1 + 80904711 I a score=-7753.000000 s hg38.chr17_JH159146v1_alt 62497 3 + 278131 tt---------t s panTro4.chr17 66182370 12 - 82630442 ATACtttttggt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712157 2 - 73212453 a----------t i ponAbe2.chr17 C 0 C 0 s papAnu2.chr16 47611724 3 + 74645514 ------ttt--- i papAnu2.chr16 C 0 I 1 s chlSab2.chr16 9878042 3 - 75148670 ------TTT--- i chlSab2.chr16 C 0 I 1 s calJac3.chr5 112723935 3 + 159171411 ------TTT--- i calJac3.chr5 C 0 C 0 e canFam3.chr9 39292265 182 - 61074082 I e mm10.chr11 99469157 1187 + 122082543 I e macFas5.chr16 52566709 1 + 80997621 I e rheMac3.chr16 53043847 1 + 80904711 I e nomLeu3.chr19 47932690 0 - 81552678 C a score=2917.000000 s hg38.chr17_JH159146v1_alt 62500 4 + 278131 tttt s panTro4.chr17 66182382 4 - 82630442 tttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712159 4 - 73212453 tctt i ponAbe2.chr17 C 0 C 0 s papAnu2.chr16 47611728 4 + 74645514 tttt i papAnu2.chr16 I 1 C 0 s calJac3.chr5 112723938 4 + 159171411 TCTT i calJac3.chr5 C 0 I 324 e canFam3.chr9 39292265 182 - 61074082 I e mm10.chr11 99469157 1187 + 122082543 I e chlSab2.chr16 9878045 1 - 75148670 I e macFas5.chr16 52566709 1 + 80997621 I e rheMac3.chr16 53043847 1 + 80904711 I e nomLeu3.chr19 47932690 0 - 81552678 C a score=75454.000000 s hg38.chr17_JH159146v1_alt 62504 295 + 278131 tattattttttttttttcagatggagtctctctctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaagctccgcctcccgggttcacgccactctcctgcctcagcctcccgaatagctgggactacaggcacccgccaccatgcctggctaattttttgtatttttagtagagacggggtttcaccgggttagcctggatggtctccatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgtctg s panTro4.chr17 66182386 295 - 82630442 ttttttttttttttcttcaaacggagtctctctctgtcgcccaggctggagtgcagtggtgcaatgttggctcactgcaagctccgcctcccgggttcactccattctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccatgcctggctaattttttgtatttttggtagatacggggtttcaccgggttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattataggcgtgagccactgcgtctg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712163 295 - 73212453 ttttttttgttttttttcagacggagtctcgctgtgtcacccaggctggagtgcagtggcgcaatctcagctcactgcaagctccgcctcccgggttcacgccattctcccgcctcagcctcccgagtagctgggactacaggcacccaccaccacgcctggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccacccgcctcggcttcccaaagtgctgggattacaggcgtgagccactgcGCCCG i ponAbe2.chr17 C 0 C 0 e canFam3.chr9 39292265 182 - 61074082 I e mm10.chr11 99469157 1187 + 122082543 I e calJac3.chr5 112723942 324 + 159171411 I e chlSab2.chr16 9878045 1 - 75148670 I e papAnu2.chr16 47611732 0 + 74645514 C e macFas5.chr16 52566709 1 + 80997621 I e rheMac3.chr16 53043847 1 + 80904711 I e nomLeu3.chr19 47932690 0 - 81552678 C a score=1724.000000 s hg38.chr17_JH159146v1_alt 62799 7 + 278131 gctgttg s panTro4.chr17 66182681 7 - 82630442 gcTATTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712458 7 - 73212453 GCCGTTG i ponAbe2.chr17 C 0 C 0 s mm10.chr11 99470344 7 + 122082543 GTTTTTT i mm10.chr11 I 1187 C 0 e canFam3.chr9 39292265 182 - 61074082 I e calJac3.chr5 112723942 324 + 159171411 I e chlSab2.chr16 9878045 1 - 75148670 I e papAnu2.chr16 47611732 0 + 74645514 C e macFas5.chr16 52566709 1 + 80997621 I e rheMac3.chr16 53043847 1 + 80904711 I e nomLeu3.chr19 47932690 0 - 81552678 C a score=1858.000000 s hg38.chr17_JH159146v1_alt 62806 6 + 278131 -ttttta s panTro4.chr17 66182688 6 - 82630442 -TTTTTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712465 6 - 73212453 -TTTTTA i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53043848 5 + 80904711 -TTTTT- i rheMac3.chr16 I 1 C 0 s macFas5.chr16 52566710 5 + 80997621 -TTTTT- i macFas5.chr16 I 1 C 0 s mm10.chr11 99470351 6 + 122082543 TTCTTC- i mm10.chr11 C 0 C 0 e canFam3.chr9 39292265 182 - 61074082 I e calJac3.chr5 112723942 324 + 159171411 I e chlSab2.chr16 9878045 1 - 75148670 I e papAnu2.chr16 47611732 0 + 74645514 C e nomLeu3.chr19 47932690 0 - 81552678 C a score=1911.000000 s hg38.chr17_JH159146v1_alt 62812 1 + 278131 t s panTro4.chr17 66182694 1 - 82630442 T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712471 1 - 73212453 T i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932690 1 - 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53043853 1 + 80904711 T i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52566715 1 + 80997621 T i macFas5.chr16 C 0 C 0 s mm10.chr11 99470357 1 + 122082543 T i mm10.chr11 C 0 C 0 e canFam3.chr9 39292265 182 - 61074082 I e calJac3.chr5 112723942 324 + 159171411 I e chlSab2.chr16 9878045 1 - 75148670 I e papAnu2.chr16 47611732 0 + 74645514 C a score=2548.000000 s hg38.chr17_JH159146v1_alt 62813 1 + 278131 t s panTro4.chr17 66182695 1 - 82630442 T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712472 1 - 73212453 T i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932691 1 - 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53043854 1 + 80904711 T i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52566716 1 + 80997621 T i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9878046 1 - 75148670 T i chlSab2.chr16 I 1 C 0 s mm10.chr11 99470358 1 + 122082543 T i mm10.chr11 C 0 C 0 e canFam3.chr9 39292265 182 - 61074082 I e calJac3.chr5 112723942 324 + 159171411 I e papAnu2.chr16 47611732 0 + 74645514 C a score=10152.000000 s hg38.chr17_JH159146v1_alt 62814 3 + 278131 ctt s panTro4.chr17 66182696 3 - 82630442 CTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712473 3 - 73212453 CTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932692 3 - 81552678 CTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53043855 3 + 80904711 CTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52566717 3 + 80997621 CTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47611732 3 + 74645514 ctt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9878047 3 - 75148670 CTT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99470359 3 + 122082543 CTT i mm10.chr11 C 0 C 0 e canFam3.chr9 39292265 182 - 61074082 I e calJac3.chr5 112723942 324 + 159171411 I a score=179247.000000 s hg38.chr17_JH159146v1_alt 62817 69 + 278131 aAAACTTCAGCCATCATTTGGTTCACTGAAGAAAGAAATGGCCCTTGAAGAGAATTTAGAAAGATTTTT s panTro4.chr17 66182699 69 - 82630442 AAAACTTCAGCCATCGTTTGGTTCACTGAAGAAAGAAATGGCCCTTGAAGAGAATTTAGAAAGATTTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712476 69 - 73212453 AAAACTTCAGCCATCATTTGGTTCACTGAAGAAAGAAATGGCCCTTGAAGAGAATTTAGAAAGATTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932695 69 - 81552678 AAAACCTCAGCCATAGTTTGGTTCACTGAAGAAAGAAATGGCCCTTGAAGAGAATTTAGAAAGATTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53043858 52 + 80904711 AAAACTTCAGCCATCGTTTGGTTCACTGAAGAA-----------------AGAATTTAGAAAGATTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52566720 52 + 80997621 AAAACTTCAGCCATCGTTTGGTTCACTGAAGAA-----------------AGAATTTAGAAAGATTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47611735 52 + 74645514 aaaacttcagCCATCGTTTGGTTCACTGAAGAA-----------------Agaatttagaaagattttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9878050 52 - 75148670 AAAACTTCAGCCATCGTTTGGTTCGCTGAAGAA-----------------AGAATTTAGAAAGATTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112724266 69 + 159171411 AAAACTTCAGCCATCATTTGGTTCATTGAAGAAACAAATGGCCCTTGAAGACAATTTAGAAAGATTTTT i calJac3.chr5 I 324 C 0 s mm10.chr11 99470362 66 + 122082543 AGAACATCAGCC-TAATTTGGCTATCTAGAAAA--AGATAAACTCTGAATAGAATTTAGGGAGATTCCC i mm10.chr11 C 0 I 30 e canFam3.chr9 39292265 182 - 61074082 I a score=132866.000000 s hg38.chr17_JH159146v1_alt 62886 52 + 278131 ATAAGTGAATACTCACTTATACATAAATATAGACGTATATTTTTTAGTGCTA- s panTro4.chr17 66182768 52 - 82630442 ATAAGTGAATACTCACTTATACATAAATATAGACGTATATTTTTTAGTGCTA- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712545 52 - 73212453 ATAAGTGAATACTCACTTGTACATAAATATAGAGGTATATTTTTTAGTGCTC- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932764 52 - 81552678 ATAAGTGAATATTCACTTATACGTAAATATAGAGGTATACTTTTTAGTGCTG- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53043910 50 + 80904711 ATAAGTGAATACTCACTTGTACGTAA--ATGGAAGTATACTTTTTAGTGCTA- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52566772 50 + 80997621 ATAAGTGAATACTCACTTGTACGTAA--ATGGAAGTATACTTTTTAGTGCTA- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47611787 50 + 74645514 ataAGTGAATACTCACTTGTACGTAA--ATAGAAGTATACTTTTTAGTGCTA- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9878102 50 - 75148670 ATAAGTGAATACTCACTTGTACGTAA--ATAGAGGTATACTTTTCAGTGCTA- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112724335 51 + 159171411 ATAAGTAAATATTCACTTATATGTAA--ATAGGGGTACACTTTTTAGTGTTAT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39292265 182 - 61074082 I e mm10.chr11 99470428 30 + 122082543 I a score=1585686.000000 s hg38.chr17_JH159146v1_alt 62938 475 + 278131 GTTAGCTAACACAATAGACAATCCTGGACAAGTGTTTTCCATCCTCTCCTGTGAATCTGATTTGTGAACCTCTCATAGCTTTTACTACGCATGGAGTCCAGGAAAAATTTGGGACAAAGTGATCGAT---CTTAATTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AGTGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTTGATAGAGGACCTAT--TGAGACTGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATTGCTAATTGATCAAAATCACCCATAATC---------Ttgcgactcgtggatcagcagccttagcatcctctgggagcttgttagatgtccaaaatcttgggcctcaacccagaacaattagat s panTro4.chr17 66182820 475 - 82630442 GTTAGCTAACACAATAGACAATCCTGGACAAGTGTTTTCCATCCTCTCCTGTGAATCTGATTTGTGAACCTCTCATAGCTTTTACTATGCATGGAGTCCAGGAAAAATTTGGGACAGAGTGATCGAT---CTTAATTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTTGATAGAGGACCTAT--TGAGACTGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATTGCTAATTGATCAAAATCACCCATAATC---------Ttgcgactcgtggatcagcagcctcagcatcctccgggagcttgttagatgtccaaaatcttgggcctcaacccagaacaattagat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24712597 501 - 73212453 CTTAGTTAACACAATAGACAATCCTGGACAAGTGTTTTCCATCCTCTCCCGTGAATCTGATTTGTGAACCTCTCATGGCTTGTACTATGCATGGAGTCCAGGAAAAATTTGGGACAAAGTGATCAAT---CTTAATTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACAATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTCAATAGAGGACCTGT--TGAGATTGGTTTATAGACACGACTATAAACCAGTGAGTGGTTTATCCCCACTCACTGTGGGAAATGCATCGAATCACCAATTGATCGAAATCACCCATAATC---------Ttgcgactcgtggatcagcagcctcagcatcctctgggagcttgttagatgtccaaaatctcgggcctcaacccagaacaattagat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47932816 475 - 81552678 GTTAGCTAACACAATAGACAATCCTGGACAAGTGTTTTCTATCCTCTCCTGTGAATCTGATTTGTGAACCTCTCATAGCTTGTGCTATGCACGGAGTCCAGGAAAAATTTGGGACAAAGTGATCGAT---TTTAATTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTCGATAGAGGACCTGT--TGAGACTGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATCGCCAATTGATCAAAATTACCCATAATG---------TTGCAACTcgtggatcagcagcctcagcatcttctgggagcttgttagatgtccaaaatcttgggcctcaacccagaacaattagat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53043960 476 + 80904711 GTTAGCTAACACAATAGGTAATCCTGGACAAGTGTTTTCCATTCTCTACCGTGAATCTGATTTGTGAACCTCTCATGGCTTGTGCTATGCATGGAGTCTAGGAAAAATTTGGGACAAAGTGATCGAT---CTTAACTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCTAAATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTCGATAGAGGACCTGT--TGAGACCGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATCGCCAATTGATCGAAATCACCCATAATC---------Ttgtgactcggggatcagcagcctcagcatcctctgggagcttgttagatgtccagaatcttgggcctcaacccagaacaattagat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52566822 475 + 80997621 GTTAGCTAACACAATAGGTAATCCTGGACAAGTGTTTTCCATTCTCTACCGTGAATCTGATTTGTGAACCTCTCATGGCTTGTGCTATGCATGGAGTCTAGGAAAAATTTGGGACAAAGTGATCGAT---CTTAACTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTCGATAGAGGACCTGT--TGAGACCGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATCGCCAATTGATCGAAATCACCCATAATC---------Ttgtgactcggggatcagcagcctcagcatcctctgggagcttgttagatgtccagaatcttgggcctcaacccagaacaattagat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47611837 475 + 74645514 GTTAGCTAACACAATAGGTAATCCTGGACAAGTGTTTTCCATTCTCTACCGTGAATCTGATTTGTGAACCTCTCATGGCTTGTGCTATGCATGGAGTCTAGGAAAAATTTGGGACAAAGTGATCGAT---CTTAACTTCTAGACTTCATTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTCTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTATCCTGTTCAGTCGATAGAGGACCTGT--TGAGACCGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATCGCCAATTGATCGAAATCACCCATAATC---------TTGTGACTCGGGGATCAGCAGCCCCAGCATcctctgggagcttgttagatGTCCAGAATCTTGGGCCTCAACCCAGAACAATTagat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9878152 475 - 75148670 GTTAGCTAACACAATAGGTAATCCTGGACAAGTGTTTTCCATTCTCTACTGTGAATCTGATTTGTGAACCTCTCATGGCTTGTGCTATGGATGGAGTCCAGGAAAAATTTGGGACAAAGTGATCGAT---CTTAACTTCTAGACTTTACTCTGTCTTCTGTTCTTGGTGAGAACCTAAGAAACATCTTCCTTCCAGGCCTGACTT----AGTGCTTTTGCAGGTTTAGCTTGCTTGGAGCAAGACTGTGCT-AATGGGATTCTAACGATGCCACCTTTCCTGCTGTGTTGTTTGTCCTGTTCAGTCGATAGAGGACCTGT--TGAGACTGGTTTATAGACACGA--------------------------CACTCACTGTGGGGAATGCATCGAATCGCCAATTGATCGAAATCACCCATAATC---------Ttgtgactcgtggatcagcagcctcagcatcctctgggagcttgttagatgtccagaatcttgggcctcaacccagaacaattagat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112724386 456 + 159171411 GTTAGCTAACACAATAGATAGCCTTGGACATGTGTTTTCCATCCTCTCCCATGAATCTAATTTGTGAACCTCTCATGTCTTGCTCTATGCATGGAATCCAGGAAAAATTTGGGGCGAAGTGATCGAT---CTTAATTTCCAGACCTCATTCTGTCTTCTATTCTTGGTGAGAACCTAGGAAATATCTCCCTTCCAGGCCTGACTT----GATGCTCTTGCAGGTTTAGCTTGCATGGAGCCAGACTGTGCT-AGTGGGATTCTGATGATGCTGCC---------------TTTATCCTGTTCATGTAA------ACCTGTCCCGAGACTGGTTTATAGACACGA--------------------------CATTCACTGTGGGGAATGCATTGAATCATCGATTGATCGAAATCACCCAGAATC---------Ttgtgacttgtgggtcagcagcctcagcgtcctctgggagctcgttagatgtgcaaaatcttcggtcttaaccccgaacaattatat i calJac3.chr5 C 0 C 0 s mm10.chr11 99470458 467 + 122082543 GCTAGGTGCTCCAACAGACAACCCAAGACAAACG-CTTCCATCTCCACCATTAGAACTGCACTGTG-------------CTGTGCCGTGCATCACACCCAGGAGTGA-CTGAGACAAAGTGCCCAGTCTCCTTAAATTCCAGAC------CTGTCTTCTGCTCTCAGCGAGAACCTAAGAAACACCCTCCTTCCAGGCCTGCCTTACCCAGGGCTCTTGAAAGATTAGCTTGCCTTGGGCAAGACTGTGTT-AATGGGATTCTACTGATGTCGCCAGTCCTGCTGCG-TGTCCACCCGGGTCAGTCTAAACCATAGTTAT--TGAAACTGGCTCATAGATGGGA--------------------------TATTCAGTGGTGGGAAC-CGACAAATGGCGGATGGGTTGAAATCACCCATCACCATTctccaagtttggtccacgggtcatcgtcctcagcaccatctggggctttgttagaagtgcggaatcccggg-ctccacccagagcttctaggt i mm10.chr11 I 30 C 0 e canFam3.chr9 39292265 182 - 61074082 I a score=2740404.000000 s hg38.chr17_JH159146v1_alt 63413 814 + 278131 cagaatctgca-ttttaacaagatccccatatg---------------ataagtatgcacattaagatttcggaagc-actg----ACATATAAGGCTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGGGTGCTGGGGATGATACATGAACATTTTCACAATA---TTTT-TTTTGTGATGAATCTCTGGATAAAATATTCTCAGC-TGATGACTGTTGATGGTATTGGGTGTATCTGTGGCCTGTCCATTATTACTACCCTGTCTTTGTCTTTCTTGTCCTATCATATTCTGTGAGTGTGTGGGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAACTCTCTCAGGGAAGCAATCATCGTCCCTGATGCTGATTCGTTTTAGGCTAAAA-----------CAAGTTAAGAACAC-ACCTCTGTATG-AAAGCAGTGGATG----CTTTGAGGTTTGATTAATGAGAAGGTAGCTTTTGGTTATAAAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTCAGAACAAGATCCAGGTAAAT---GATGTCAAAC----TAC--------CAATTGCCTC---TGAAAAATATGAGTTCTGAT--TT--------------------------------------------------------------TCAAATA-GAAAATCCAGATTTCT-CAT---------------ACCTG-----------GGCTCTT------------------ACCTTAGATAAAAGCCA--------TCAGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAGCA-CTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATActgggtacaaattctgtttccaccattttatagctgtat s panTro4.chr17 66183295 814 - 82630442 cagaacctgca-ttttaacaagatccccacatg---------------ataagtatgcacattaagatttcggaagt-actg----ACATATAAGGCTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGGGTGCTGGGGATGATACATGAACATTTTCACAATA---TTTT-TTTTGTGATGAATCTCCGGATAAAATATTCTCAGC-TGATGACTGTTGATGGTATTTGGTGTATCTGTGGCCTGTCCATTATTACTACCCTGTCTTTGTCTTTCTTGTCCTATCATATTCTGTGAGTGTGTGGGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGCGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAACTCTCTCAGGGAAGCAATCATCGTCCCTGATGCTGATTCGTTTTAGGCTAAAA-----------CAAGTTAAGAACAC-ACCTCTGTGTG-AAAGCAGTGGATG----CTTTGAGGTTTGATTAATGAGAAGGTAGCTTTTGGTTATAAAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTTTGACTCATGGATCTTGTCAGAACAAGATCCAGGTAAAT---GATGTCAAAC----TAC--------CAATTGCCTC---TGAAAAATATGAGTTCTGAT--TT--------------------------------------------------------------TCAAATA-GGAAATCCAGATTTCT-CAT---------------CCCTG-----------GGCTCTT------------------ACCTTAGATAAAAGCCA--------TCAGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAACA-CTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATActtggtacaaattctgtttccaccattttatagctgtat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24713098 807 - 73212453 cagagtctgca-ttttaacaagatccccgtatg---------------ataagtatgcacattaagatttcggaagt-actg----ACATATAAGGCTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCCAGGGTGCTGGGGATGATACATGAACATTTTCACAATA---TTTT-TTTTGTGATGAATCTCTGGATAAAATATTTTCAGC-TGATGACTGTTGATGGTATTGGGTGTGTCTGTGGCCTGTCTATTATTACTACCCTCTCTTTGTCTTTCTTGTCCTATCATAATCTGTGAGTGTGTGGGGAAAGAAAATTTTAATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAATCATTGTCCCTGATGCTGATTGGTTTTAGGCTAAAA-----------CAAGTTAAGAATAC-ACCTCTGTGTG-AAATCAGTGGATG----CGTTGTGGTTTGATTAATGAGAAGGTAGCTTTTGGCCATAAAAACCTGTC---CTTTGGTCCTGAGTGTCTGTTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAT---GATGTCAAAC----TAC--------CAATTGCCTC---TGAAAAATATGAGTTCTGAT--TT--------------------------------------------------------------TCAAACA-GAAAATCCAGATTTCT-CAT---------------CCCTG-----------GGCTCTT------------------ACC-TAGATAAAAGCCA--------TCGGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTTGCAAGCA-TTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATActgggtacaaattctgtttccaccattttatagctgtat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47933291 809 - 81552678 cagaatctgca-ttttaacaagatccccgtgtg---------------ataagtatgcacattaagatttcggaagt-actg----ACATATAAGGCTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGAGTGCTGGGGATGATGCATGAACATTTTCACAATA---TGTTATTTTGTGATGAGTCTCTGGATAAAGTATTTTCAGC-TGATGACTGTTGATGGTATTGGGTGTATCTGTGGCCTGTCCATTATTACTATCCTCTCTTTGTCTTTCTTGTCCTATCATATTCTGTGAGTGTGTAGGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGCTCCTCCAGG-TTTGGAACTTGCTAAG--CTTTCAGGGAAGCAATCACTGTCCCTGATGCTGATTGATTTTAAGCTAAAA-----------CAAGTTAAGAACAC-ACCTCTGTGTG-AAAGCAGTGGATG----CTTTGAGGTTTGATTAATGAGAAGTTGGCTTTTGGTTATAAAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAC---GATGTCAAAC----TAC--------CGATTGCCTC---TGAAAAATATGAGTTCTGAT--TT--------------------------------------------------------------TCAAGTA-GAAAATCCAGATTTCT-CAT---------------CCCTG-----------GGCTCTT------------------ACCTTAGATAAAAGCCA--------TCGGCAAGGGCTCATCAAAATGTGTTGACCATATTCAG----ATTTGACATAACTCTCTAGCAAGCA-TTTTTGAC-TTGTGTGGAAC-----AAAgagtaaatataccgggtacaaattctgtttccaccattttatagttgtat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53044436 791 + 80904711 cagaatctgca-ttttaacaagatccct-tatg---------------ataagtatgcacattaagatttcagaagt-actg----ACATACAAGACTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGAGTGCTGGGGATGATACATGAACATTTTCACAATATG-TTTT-TTTTGTGATGAGTCTCTGGATAAAATATTTTCAGC-TGATGACTGTTGATGGTGTTGGGTGTATCTGTGGCCTGTCCATTATTGCTACCCTCTCTTTGTCTTTCTTGTCCTATCATATTCTGTGAGTGTGTGAGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAGTCACCGTCCCTGATGCCGATTGGTTC----------------------------AGAACAC-GCCTCTGTGTG-AAAGCAGTGGATG-----TTTGAGGTTTGATTAATGCGAAGGTAGCTTTTGGTCATAGAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAT---GACGTCAAAC----TAC--------CCATTGCCTC---CGAAAAATACGAGTTCTGAT--TT--------------------------------------------------------------TCAAATA-CAAAATCCAGATTTCT-CAT---------------CCCTG-----------GGCTCTT------------------ACCTTAGATAAAAGTCA--------TTGGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAGCA-TTTTTGAC-TTGTGTGGCAC-----AAAgagtagatataccgggtacaaattctatttccaccattttatagctgtat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52567297 791 + 80997621 cagaatctgca-ttttaacaagatcccc-tatg---------------ataagtatgcacattaagatttcagaagt-actg----ACATACAAGACTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGAGTGCTGGGGATGATACATGAACATTTTCACAATATG-TTTT-TTTTGTGATGAGTCTCTGGATAAAATATTTTCAGC-TGATGACTGTTGATGGTGTTGGGTGTATCTGTGGCCTGTCCATTATTACTACCCTCTCTTTGTCTTTCTTGTCCTATCATATTCTGTGAGTGTGTGAGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGCCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAGTCACCGTCCCTGATGCCGATTGGTTC----------------------------AGAACAC-GCCTCTTTGTG-AAAGCAGTGGATG-----TTTGAGGTTTGATTAATGCGAAGGTAGCTTTTGGTCATAGAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAT---GACGTCAAAC----TAC--------CCATTGCCTC---CGAAAAATACGAGTTCTGAT--TT--------------------------------------------------------------TCAAATA-CAAAATCCAGATTTCT-CAT---------------CCCTG-----------GGCTCTT------------------ACCTTAGATAAAAGTCA--------TTGGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAGCA-TTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATAccgggtacaaattctatttccaccattttatagctgtat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47612312 809 + 74645514 cagaatctgca-ttttaacaagatcccc-taTG---------------ATAAGTATGCACATTAAGATTTCAGAAGT-ACTG----ACATACAAGACTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGAGTGCTGGGGATGATACATGAACATTTTCacaatatgttttt-ttttgtgatgagtctctggataaaatattttcagc-tgaTGACTGTTGATGGTGTTGGGTGTATCTGTGGCCTGTCCATTATTACTaccctctctttgtctttcttgtcCTATCATATTCTGTGAGTGTGTGGGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAGTCACCGTCCCTGATGCTGATTGGTTTTAGGCTAAAA-----------GAAGTTAAGAACAC-ACCTCTGTGTG-AAAGCAGTGGATG-----TTTGAGGTTTGATTAATGCGAAGGTAGCTTTTGGTCATAGAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAT---GACGTCAAAC----TAC--------CCATTGCCTC---CGAAAAATACGAGTTCtgat--tt--------------------------------------------------------------tcaaata-gaaaatccAGATTTCT-CAT---------------CGCTG-----------GGCTCTT------------------ACCTTAGATAAAAGTCA--------TTGGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAGCA-TTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATACCGGGTACAAATTCTATTTCCACCATTTTATAGCTGTAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9878627 809 - 75148670 cagaatctgca-ttttaacaagatccccatatg---------------ataagtatgcacattaagatttcagaagt-actg----ACATACAAGACTTGGGACTGGGTGGTGACCTGAAACTACTGCTTCCTAGAGTGCTGGGGATGATACATGAACATTTTCACAATATG-TTTT-TTTTGTGATGAGTCTCTGGATAAAATATTTTCAGC-TGATGACTGTTGATGGTGCTGGGTGTATCTGTGGCCTGCCCATTATCACTACCCTCTCTTTGTCTTTCTTGTCCTATCATTTTCTGTGAGTGTGTGGGGAAAGAAAATTTTGATAGAAAACAGGAGTGAGTGTGGAGTCTAACTGGACAGGT---TGGGGTCTGAGGTCCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAGTCACCATCCCTGATGCTGATTGGTTTTAGGCTAAAA-----------CAAGTTAAGAACAC-ACCTCTGTGTG-AAAGCAGTGGATG-----TCTGAGGTTTGATTAATGCGAAGGTAGCTTTTGGTCATAGAAACCTGTC---CTCTGGTCCTGAGTGTCTATTTCTGACTCATGGATCTTGTT----CTAGTACCAGGTAAAT---GACGTCAAAC----TAC--------CCATTGCCTC---CGAAAAATACAAGTTCTGAT--TT--------------------------------------------------------------TCAAATA-GAAAATCCAGATTTCT-CAT---------------CTCTG-----------GGCTCTT------------------ACCTTAGATAAAAGTCA--------TTGGCAAGGGCTCATCAAAATGTGTTGCCCATATTCAG----ATTTTACATAACTCTCTAGCAAGCA-TTTTTGAC-TTGTGTGGCAC-----AAAGAGTAAATATAccgggtacaaattctatttccaccattttatagctgtat i chlSab2.chr16 C 0 I 2124 s calJac3.chr5 112724842 807 + 159171411 cagaatctgca-ttttaacaaggtccccatatg---------------ataagtatgcacattaagatttcagacgt-actg----ACATACAAGGCTTGGGACTGGGCAGTGACCTGACACTACTGCTTCCTAGGGTGCTGGAGATGAGACATGAACATTTTCAGAATA---TGTT-TTTTGTGATGAGACTCCGGATAAAATCTTTTCAGC-TCATGACTGTTGATGGTATTAGGTGTATTTGTGGCCTGTCCATTATTACCACCCTCTCTTTG----TCTTGTCCTATCATATTCT----GTGTGTGGGGAAAGATGATTTTGATAGAAACCAGGAGTGAGTGTGGAGTCTAACTGGACAGATACCGAAGGTTTGA---TCTCCAGG-TTTGGAACTTGCTAAG--CTCTCAGGGAAGCAATCATCATCGCTGATGCTGATTGGTTTTAGACTAAAA-----------CAAGTTAAGAGCACAACCTCTGTGTGCAAAGGAGTGGATG----CTTGGAGGTTTGAGAAATGAGAAGGTAGCTTTTGGTCATAAAAACCTGTC---TTCTGGTCCTGAGTGCCTATTTCTGACTCATGGATCTTGTT----CTAGTTCCAGGCAAAT---GATGTCAAACTACTTAC--------TAATTGCCAC---TGAAAAATATGAGTTTTGAT--TT--------------------------------------------------------------TCAAATAGGAAAATCCAGATTTCT-CAT---------------CCCTG-----------GACTCTT------------------ACCTTAGATGAAAGCCA--------TCAGCAAGGGCTAATTAAAATGTGTTGCTTGTGTTCAG----ATTTCATGTAACTCTCTAGCAAGCA-TTGTTGAC-TCGTCTGGCAC-----AAACAGcaaatacaccgggtacaagttttgtttccaccattttatagctgtat i calJac3.chr5 C 0 C 0 s mm10.chr11 99470925 803 + 122082543 cacaatct-ca--tttaacaagctctcc----------------------gggtatgcgcactaggacttcagaagcaACTG----GTTCCCAAGGCTTGTGGCTGGGTGGTGACTCGAAACCATGGCTCCCGAAGCTGCTGGAAACGATGGGTGGAAATCTTCATACTA---CGC--CTTTGTGATAAGA--CCGAATAAAATATTTCTGCCTTAATGGCTGTTGAAAATATCTGGGGCAATAGTGATCTGTC-ATTATTACTTCCTTCTGTTCATCTTCCCTGATCCTTGGGGTTCGGTATGTG-----GCAGAGAGGATTC---TAGAAACTAGGAGTG-GTGTGTGGTCTAACTTGGCACACATCTGAGGTGTGACACCCTCTAGG-TTTGACATTTGCCAA---TTCTCAGGGAGGAAGTCAGTTTCCCTAGTAAGAATGGATGCAATTTTAGGGGCTGTTAATTTCAGGTTAAGAGATC-GTGTCTGTA-G-ACAGCATTGCATGAATGCTTCAAGTTTTGGGTAGTGAGA----------CGGTTATAATATCCTGTCACTCTTTGGTCCTGATTATC------CGACTCACACATACAGTG----CTGGTACGATGTCAAT---AAGATCAGGT------C--------TGATCACCAC---TGGAATATGGGAGTCCAGCTGCCT--------------------------------------------------------------TCAAATCTGAAAACTCAGATTTCC-CAT---------------C-CTG-----------GCTTCAC------------------ATTTCAGATAAAAAAAAAAACACATTTAGCAAATGTCCATTAAACTGCATGATGCATGTTTAGTTTTTTTTTTCACAACTCTTTGGAAATCG-TTTGTGAC-TCTTGTGGCAT-----AAAGCAGAAGCACATtgggcacaaattcaggagccaccattttatgactaagg i mm10.chr11 C 0 C 0 s canFam3.chr9 39292447 889 - 61074082 cAGAATCTGCAATTTTAATtatatatatatatatatatatatatatatatatataAGCATATTAAAATTTCAGAAGC-ACTGATATACATATAAGACTTGGGATTAGATGTTGACCCCAAATAACTGCTTCCCAGAATGTTGGAAATGATAAATAGAAAATTTCACAATA---TGC--TTTTGTGATGACACTCTAGATAAAATATTTCCAAT-TAATGACTCTCGAACATATTTTGTGTAACTATGGCTCATCCATCATTACCATCTTCTCTTAGTCCTTTTT---CTTGCTTAGTCTCTGACTGTATG-GGAGAGATAACTTTGGTAGA-------AGTGAGTGTAAGATCTAACTGGACAGAC---TAAGAGGTGGGGTCCTCTAAGTTTTGGAACTTGATAAG--CCCT-----------------TTCTTGGTATTG--------------------------------------------ACCTCTATGTACAGAGGATTGAATG----CTTTGATGTTTGGGTAATGGGAGAGTAGCTTTTAGTCATAAAAGTCTATC---CC----TCTCTAGTGTGTATTTCTGACTCTT---TTGTATT----CTAGTATAATGTACATTCAGATTTCATGG----TACATTCTGGACTCTTACCTTATATAAAAAACATCAGTGGGGAT--CTctgggtggcccagcagtttggcacctgccttaagcccagggcatgatcttggagacccgggatcaagtc-ccacatcgggctttctgcatggagcctgcttctccctctgcctgtgtctctgcctctctctctctgtccaagtaaaatcttaaaaaaaaaAAA--------TCTGCAAGAGTTCATCAAAACATGTTGCCTGCATTAAA----GTTTTATATAACTCTTTAGCAACCATTTTTTGACTTTgcgtgatacaataaaaagatcaagtacactgggtacaaattctggttctaccatttt-tagctatat i canFam3.chr9 I 182 C 0 a score=407717.000000 s hg38.chr17_JH159146v1_alt 64227 115 + 278131 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataatgatatgccacaaggttttgataaatgttaaatgagattgtgaatgtaaag s panTro4.chr17 66184109 115 - 82630442 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataatgatatgccacaaggttttgataaatgttaaatgagattgtgaatgtaaag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24713905 115 - 73212453 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataatgatatgccacagggttttgataaatgttaaatgagattgtgaatgtaaag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47934100 115 - 81552678 gaccacaggcaagtttatgcagtccatttgagcctcactttccccaatcacaaaataaagataatgatatgccacagggttttgataaatgttaaatgagatcgtgaatgtaaag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53045227 115 + 80904711 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataacgatatgccacagggttttgataaatgttaaatgagatggtgaatgtacaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52568088 115 + 80997621 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataacgatatgccacagggttttgataaatgttaaatgagatggtgaatgtacaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47613121 115 + 74645514 GACCACAGGCAAGTTAATGCAGTccatttgagcctcagtttccccaatcataaaataaagataacGATATGCCACAGGGTTTTGATAAATGTTAAATGAGATGGTGAATGTAAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9881560 115 - 75148670 gaccacaggcaagttaatgcagtccatttgagcctcagtttccccaatcataaaataaagataatgatacgccacagggttttgataactgttaaatgagatggtgaatgtaaaa i chlSab2.chr16 I 2124 C 0 s calJac3.chr5 112725649 112 + 159171411 gaccacaggaaagttaatgcagtccatctgagcctcagtttcttcaaacataagatacaggta---atatgccacagggctgtgacaaatgttaaatgagatcctgaatgtaaag i calJac3.chr5 C 0 C 0 s mm10.chr11 99471728 111 + 122082543 gatcccaggcacgtcaacgtgctccatctgagcctcggtttcatagattgcaaagtgcagacaatgaAGTCGTGCATGGCTATGGCCG-TGTTACACGAA---GTCAATGTGTAA i mm10.chr11 C 0 I 363 s canFam3.chr9 39293336 100 - 61074082 gaccat-------------tagttcattt-agccccaatttcctcagcc-tagaatgaggctaatactaccttgctgggttgtgacaagtgttaaatgaaattgtgaatgcaaag i canFam3.chr9 C 0 C 0 a score=1719693.000000 s hg38.chr17_JH159146v1_alt 64342 503 + 278131 -------------------cTCAGTCAAGGATAGTTGTTATTTAAAAAACTTCTGGTACATGTGTG--T--GTATGTCA----------------------------------------------------------------------------ATGCATACAT-----GCTATGCTGCGTATGCATACCATGGAATTAGCAAAAATTGACTTGTAGTTTCTATTAGATGACTCATAATTTTATTAGATGAATTCCCATTTAAATTTCAATGGGA-AGTTTGGGTGAGTAGGACAACCCATGTACTGAAATAGTT--------------------------------ACACACACACACAAAG-TTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATCGTTAGGTATGTGAGAAGCACTG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTATATTTTAGAAACTCTCTAACTCTCTTCAGAGAGATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCCTATAGTC-ATTCGGA-AAACCAATGTTGTTACCATAGGGAAATAACCAACAAAATACTTCAGGTG--ATATGTAAACACC s panTro4.chr17 66184224 503 - 82630442 -------------------cTCAGTCAAGGATAGTTGTTATTTAAAAAACTTCTGGTACATGTGTG--T--GTATGTCA----------------------------------------------------------------------------ATGCACACAT-----GCTATGCTGCGTATGCATACCATGGAATTAGCAAAAATTGACTTGTAGTTTCTATTAGATGACTCATAATTTTATTAGATGAATTCCCATTTAAATTTCAATGGGA-AGTTTGGGTGAGTAGGACAACCCATGTACTGAAATAGTT--------------------------------ACACACACATACAAAG-TTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATTGTTAGGTATGTGAGAAGCACTG---TCTTTTCCTTTTTGCATGATCTCACCTCCAATATATTTTAGAAACTCTCTAACCCTCTTCAGAGAGATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACGTG--GGAATGAAAGTAGGCCTGTAGTC-ATTCGGA-AAACCGATGTTGTTACCATAGGGAAATAACCAACAAAATACTTCAGGTG--ATATGTAAACACC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24714020 606 - 73212453 -------------------ctcagtcaaggaaagttgttattt-aaaAACTTCTGgtacatgtgta--t--gtatgtcacatgcatacatgtgtatgtatgtcacatgcatacatgtgtatgtatgtcacatgcgtacatgtgtatgtatgtcacatgcatacat-----gctatgtTGCTTATGCATACCACGGAATTAGCAAAAATTGACTTGTAGTTTCTATTAGATGGCTCATAATTTTATTAGATGAATTCCCATTTAAATTTCAA-AAGA-AGTTTGGGTGAGTAGGACGACCCATGTACTGAAATAGTTacacacata-------ccacacacacacacacacacacacacacaAAG-TTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATTGTTAGGTATGTGAGAAGTACTG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTATATTTTAGAAA--CTCTAACCCTCTTCAGAGAGATGGTGACACGTAGATGTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCATGTAGTC-ATTCAGA-AAACCAATGTTGTTACCATAGGGAAATAACCAACAAAATACTTCAGGTG--ATATGTAAACATC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47934215 520 - 81552678 -------------------cTCAGTCAAGGGTAGCTGTTATTTAAAAAACTTCTGGTACATGTGTA--T--GTATGTCA---------------------------------------------------------------------------CATGCATACAT-----GCTATGTTGCGTATACATACCATGGAATTAGCAAAAATTGACTTGTAGTTTCTATTAGATGACTCATAATTTTACTAGATGAATTCCTATTTAAATTTCAAAGCAA-AGTTTGGGTAAGCAGGACAACCCATATACTGAAATAGTT----------------acacacacagacacacacacacacacacaAAG-TTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATTGTTAGGTATGTGAGAAGCACTG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTATATTTTAGAAACTCTCTAACCCTCTTCAGAGAGATGGTGACAC------ATAGATATTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAGGTAGGCATGTAGTC-ATTCGGA-AAACTAACGTTGTTACCATAGGGAAATAACCAACAAAATACTTCAGGTG--ATATGTAAACACC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53045342 517 + 80904711 -------------------cTCAGTCAAGGATACTTGTCATTTAAAAAACTTCTGGTCCATGTGTA--T--GTATGTCA---------------------------------------------------------------------------CATGCATACAT-----GCTATGTTGCCTATGCATACCATGGAATTAGCAAAAATCAGCTTGTAGTTTCTATTAGATGACTCATAGTTTTATTAGTTGAATTCCCATTTAAATTTCAAAGAGA-AGTTTGGGTGAGTAGGACAATCCATTTACTGAAATAGTTAT------------------acacacacacacacacacacacacaAAATTTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATCGTTAGGTA--TCAGAAACACGG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTGTATTTTAGAAACTCTCTAACCCTCTTCAGAGAGATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCATGTATTC-ATTCGGA-AAACCAATGTTGTTACCTTATGGAAATAACCAACAAAATACTTCAGGTG--ATATGTAAACGCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52568203 513 + 80997621 -------------------cTCAGTCAAGGATACTTGTCATTTAAAAAACTTCTGGTCCATGTGTA--T--GTATGTCA---------------------------------------------------------------------------CATGCATACAT-----GCTATGTTGCCTATGCATACCATGGAATTAGCAAAAATCAGCTTGTAGTTTCTATTAGATGACTCATAGTTTTATTAGTTGAATTCCCATTTAAATTTCAAAGAGA-AGTTTGGGTGAGTAGGACAATCCATTTACTGAAATAGTTAT----------------------acacacacacacacacacacaAAATTTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATCGTTAGGTA--TCAGAAACACGG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTGTATTTTAGAAACTCTCTAACCCTCTTCAGAGATATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCATGTATTC-ATTCGGA-AAACCAATGTTGTTACCTTACGGAAATAACCAACAAAATACTTCGGGTG--ATATGTAAACGCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47613236 515 + 74645514 -------------------CTCAGTCAAGGATActtgtcatttaaaaaacttCTGGTCCATGTGTA--T--GTATGTCA---------------------------------------------------------------------------CATGCATACAT-----GCTATGTTGCCTATGCATACCATGGAATTAGCAAAAATCGGCTTGTAGTTTCTATTAGATGACTCATAGTTTTATTAGATGAATTCCCATTTAAATTTCAAAGAGA-AGTTTGGGTGAGTAGGACAATCCATTTACTGAAatagttat--------------------acacacacacacacacacacacaaaatttcaaGGTAAAACTT--CTGAGTATGATTAGATCATCAGATCGTTAGGTA--TCAGAAACACGG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTGTATTTTAGAAACTCTCTAACCCTCTTCAGAGAGATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATGGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCATGTATTC-ATTCGGA-AAACCAATGTTGTTACCTTACGGAAATAACCAACAAAATACTTCGGGTG--ATATGTAAATGCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9881675 527 - 75148670 -------------------cTCAGTCAAGGATACTTGTTATTTAAAAAACTTCTGGTCCATATGTA--T--GTATGTCA---------------------------------------------------------------------------CATACATACAT-----GCTATGTTGCCTATGCATACCATGGAATTAGCAAAAATCGGCTTGTAGTTTCTATTAGATGACTCACAGTTTTATTAGATGAATTCCCATTTAAATTTCAAAGAGA-AGTTTGGGTGAGTAGGACAATCCATTTACTGAAATAGTTATacacac--------acacacacacacacacacacacacacacacaATTTCAAGGTAAAACTT--CTGAGTATGATTAGATCATCAGATTGTTAGGTA--TCAGAAACACGG---TCTTTTCCTTTTTGCATGATCTCACCTCCAGTGTATTTTAGAAACTCTCTAACCCTCTTCAGAGAGATGGTGACAC------GTAGATGTTGTAATAGAATAGATGAGATAGGAATGAGTCA--CACATG--GGAATGAAAGTAGGCATGTATTC-ATTCGGA-AAACCAATGTTGTTACCTTACGGAAATAACCAACAAAATACTTCGGGTG--ATATGTAAACGCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112725761 532 + 159171411 -------------------cTCAGTCATGGATAGTTGTTATTTAAAACAATCCTGGCATCTGTGTA--T--GTACGTCA---------------------------------------------------------------------------TTTGCGTACGT-----GCTATGTTGCCTAACCATACCATGAAATTAGCACAAATCGACTTGCAGTTTTTATGAGATGACTCATAATTTTATTAAAGAAATTCCCATTTAAATTTCAAAGAGA-AGTTTGGGTGAGTAGGACAATCCATGTACTGAAAGAGTTCTGTGTGCAGGTGCGTGTGCGCGCGcacacacacacacacacacacaATTTTAAGGTAAAACTT--CTGAGTATCACTAGGTCATC-----GTTGAGTATGTCAGAAACACTG---TCTTTTCCTTTTTATATGATCTCACCTCAAGTATATTTTAGAAA--CTCTAATCCTCTTCAGAGAGATGATGACAC------ATAGATGTTGTAATAGAATAGATGAGATGGAAATGAGTCA--CACACACTGGAATGAACCTAAGCATGCAGTA-ATTCGAA-AAACCAATGTTGTTACCATACGGAAATAACCAACAAAATACTTTAGGTG--ATAGGTAAACACC i calJac3.chr5 C 0 C 0 s mm10.chr11 99472202 488 + 122082543 -------------------cccagccATGGTTAGTTATTA----ATATTTTTCTAGTATGTATATATTT--TTATGTCA---------------------------------------------------------------------------TGTGTATGAGTGTTGGGTTGTGTTGTATACATGTATCTTGAAACTAGCATAGACCG----GTAGTCTTCTTGAAATGATTCATAATTTCATTAGATGAATTCTCATTTAAAATTCAGAGGGAGATTTTTGGTGAG--------------TGCTGGGATGATTAA--------------ACTGATGTAGACACACAGAGCCATGCACAGAGATGGTAGAGAAAACTCAACTGAGTTAAACCAGCCCATTACCT-------TACAGCAGGGGCATGT---TCTTTTCCTTTTTAAATGATCTCAAC---GGAAAGTTCTGGAAATGTTCTAATCCTCCTTAAAAAGATG-TGACAG------GCAGTGGTGATGAGATAGTAAGTGAGAAGGG-ATGAGTCA--CATCCA--GGAATGAACTCAGACACGTTGTCGAGTCAGG-AAATCAGCATGCCCA------GGAAACA------CGAACACTCCAGGGC--ATATGCTAACCCC i mm10.chr11 I 363 I 630 s canFam3.chr9 39293436 538 - 61074082 GTCACAATTTTTATTATTGTTAAAATAAGAATAGTTGTTA---AAATTTCTTCTAATACATGTGTG--TACATATGTCA---------------------------------------------------------------------------CACTCATGAGT------TTACATTGTGTATGCATACCTAAAAATTAGTATAAATTGACATATAGTCTTTATTCAATGACTCATAATTTTATTAGATGGTTTCTAATTTAAATTTTAAATAGA-AGTTTTGGTGCATAGGACAGTCCATGTACCAGTATA-------------------ACAAACACATACACAAACACATATACTCAGAGTTCTTCAGTAAAACTC--CTAAGTCTGTTTA---TATTAGATCATGAAGTATGTCAGAAGCACTGTCATCTTTTCCTTTTTGCATGATCTCACTGCAAATATATTTTAGAAA--TTCTAATCCTCTTCAGAAGGAAGGTGACAT------ATAGATGTTGTGATAGAATAAATGAGATGGGGATGAGTCACCCACATG--GGAATGATCTCAGTCATGTAGTA-AGGCAGAGAAACCGATGTTGTTATGGTACACAAATAACCAACAGAACACTTCAGAGGGTATATATAAACACC i canFam3.chr9 C 0 C 0 a score=27889.000000 s hg38.chr17_JH159146v1_alt 64845 9 + 278131 -AAAAATCTG s panTro4.chr17 66184727 9 - 82630442 -AAAAATCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24714626 9 - 73212453 -AAAAATCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47934735 9 - 81552678 -AAAAATCTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53045859 9 + 80904711 -AAAAATCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52568716 9 + 80997621 -AAAAATCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47613751 9 + 74645514 -AAAAATCTg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9882202 9 - 75148670 -AAAAATCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112726293 9 + 159171411 -AAAAATCTT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39293974 9 - 61074082 CAAAATCCT- i canFam3.chr9 C 0 C 0 e mm10.chr11 99472690 630 + 122082543 I a score=3246134.000000 s hg38.chr17_JH159146v1_alt 64854 911 + 278131 AAAAGTATTTATTGATTAAAAGCTGTAGAAAAGTATAGCATTTAGAGTAT-----AGCATTGTGAATAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAGGGAGAACATTGCTTAACTATGTTGAAAAGAGATCTCCTTTCAGTGAAACTGTTGGTTTGTGTGGTATTGGAGGC-ATAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAA--A-----------GAGAGTCAAAAGGAATTGAAACTCAACGAGAAGAAAA---AGAATTTCCTTGGGCATCCCAGCATGCTTAAGTGAGGAGCAGGGGATG--CCCTGAC--TTCAGGTTGGAGCTA--CACTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGAACA----T-CATGTGCAATGGCTTTACTCTTTACCATCTCTGAAGAGGGTAG-----------------------ACCTTTGCTTTTCTCTTGAAAGTTTTGATG--TCATCTATTGTTATTAGACCAGGACTTTCATTAGAGGTCCATGTCAGTGTTAAAATGACTAGTATGCTGGTC-AAAAGTTTGGTGGGATGCAAATGAACTAGTTCGCC--------TTAAATCAGCTATTGTCACTGAGCAAATAAC-AGAGTCTTCTGTTTAAAATACTCtgtttcacttgcc---------tattgcggcatgaaaaatgaccccaaaactc-actggcttaaaacaaccaccattgtatttgttcacaatta-ttttgtgggacagaattttggattcagaatagcagggatg----gcctgtctctgctctgtgatgcctgggg--gcagtggcattgtcttgaatggctggaaactggctggaatggcttgactc-agtcatatgcctggagc s panTro4.chr17 66184736 914 - 82630442 AAAAGTATTTATTGATTAAAAGCTGTAGAAAAGTATAGCATTTAGAGTAT-----AGCATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TTTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAG-TTCTTGGTGAGGGAGAACATTGCTTAACTATGTTGAAAAGAGATCTCCTTTCAGTGAAACTGTTGGTTTGTGTGGTATTGTAGGC-ATAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GAGAGTCAAAAGGAATTGAAACTCAACGAGAAGAAAA---AGAATTTCCTTGGGCATCCCAGCATGCTTAAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGGTTGGAGCTA--CCCTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGAACA----T-CATGTGCAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCTTTGCTTTTCTCTTGAAAGTTTTGATGCTTCATCTATTGTTATTAGACCAGGACTTTCATTAGAGGTCCATGTCAGTGTTAAAATGACTAGTATGCTGGTC-AAAAGTTTGGTGGGATGCAAATGAACTAGTTCGCC--------TTAAATCAGCTATTGTCACTGAGCAAATAAC-AGAGTCTTCTGTTTAAAATACTCtgtttcacttgcc---------tattgcggcatgaaaaatgaccccaaaactt-actggcttaaaacaaccaccattgtatttgttcacaatta-ttttgtgggccagaattttggattcagaatagcagggatg----gcctgtctctgctctgtgatgcctgggg--gcagtggcattgtcttgaatggctggaaactggctggaatggcttgactc-agtcatatgcctggagc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24714635 912 - 73212453 AAAAGTATTTATTGATTAAAGGCTGTATAAAAGTATAGCATTTAGAGTAT-----AGTATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTATGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAAGGAGAACATTGCTTAACTATGTTGAAAAGAGAT---CTTTCAGTGAAACTGTTGGTTCGTGTGATACTGTAGGC-ATAAATGTTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GAGAGTCAAAAGGAATTGAAACTCAACGATAAGAAAA---ATAATTTCCTTGGGCATCCCAGCATGCTTAAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGGTTGGAGCTA--CCCTGCTTGGGCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGAACA----T-CATGTGCAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCTTGGCTTTTCTCTTGAAAGTTTTGATGCTTCATCTATTGTTATTAGACCAGGACTTTCATTAGAGGTCCACGTCAGTGTTAAAATGACTAGTATGCTGGTC-AAAAGTTTGGTGGGATGCAAATGAACTAGTTCGCC--------TTAAATCAGCTATTGTTGCTGAGCAAATAAC-AGAATCTTATGTTTAAAATACTCtgtttcacttgcc---------tattgcgtcatgaaaaacgaccccaaaactt-actggcttaaaacaaccaccattgtatttgttcacaatta-ttctgtgggccagaattttggattcagaatagtggggatg----gcctgtttctactctgtgatgcctgggg--gcagtggtactgtcctgaatgtctggaaactggctggaatggcttgactc-agtcatatgcctggagc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47934744 915 - 81552678 AAAAGTATTTACTGATTAAAGGCTGTGTAAAAGTATAGCATTTAGAGTAT-----AGCATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTACAGTTTCTTGGTGAAGGAGAACATTGCTTACCTATGTTGAAAAGAGATCACCTTTCAGTGAAACTGTTGGCTTGTGTGATATTGTAGGC-ATAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GAGAGTCAAAAGGAATTGAAACTCAAAGATAAGAAAA---AGAATTTCCTTGGGCATCCCAGCATGCTTAAGTGAGCAGCAGGGGATG--CCCTGAC--TCCAGGTTGGAGCTA--CCCTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGAACA----T-CATGTGCAGTGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCTTGGCTTTTCTCTTGAAAGTTTTGACACTTCATCTATTGTTGTTAGACCAGGACTTTCATTAGAGGTCCACGTCAGTGTTAAAATGACTAGTATGCTGGTC-AAAAGTTTGGTGGGATGCAAATGAACTAGTTCGCC--------TTAAATCAGCTATTGTCACTGAGCAAATAAC-AGAGCCTTCTGTTTAAAATACTCtgtttcatttgcc---------tattgcagcatgaaaaacgaccccaaaactt-actggcttaaaacaaccaccattgtatttgttcacaatta-ttttgtgggccagaattttggattcagaatagtggggatg----gcctgtctctgctctgtgatgcctgggg--gcagcggcactgtcttgaatggctgaaaactggctggaatggcctgactc-aatcatatgcctggagc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53045868 899 + 80904711 AAAAGTATTTATTGATTAAAGGCTGTATAAAAGTATAGCACTTGGAGTAT-----AGCATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAAGGAGAACATTGCTTACCTATGTTGAAAAGAGATCACCTTTCAGTGAAACTGTTGATTTGCGTGCTATTGTAGAC-ATAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GGGAGTCAAAAGGAATTGAAACTCAAAGATAA-AAAA---AGAATCTCCTTGGGCATCCCAGTATGCTTCAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGATTGGAGCTA--CCCTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGACCA----T-CATGTGTAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCCTGGCTTTCCTCTTGAAAGTTTTGATGCTTCATCTATTGTTGTTAGACCAGGACTTTCA-TAGAAGTCCACATCAGTGTTCAAATGACTAATATGCTGATC-AAAAGTTTGGTGGGATGCAAATGAACTAATTCACC--------TTAAATCAGCTATTGTCACTGAGCAAATAAT-AGAGTCTTCTGTTTAAAATACTCtgttttacttgcc---------tattgtggcatgaaaaatgaccctaaaactt-attggcttaaaacaactaccactgtatttgttcacaatta-ttttgtgggccagaattttggattcagaatagtggggatg----gcctgtctctgttctgtgatatctgggg--gcagcggcactgtcttgaatggctgggaactggctg---------------attcatatgcctggagc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52568725 899 + 80997621 AAAAGTATTTATTGATTAAAGGCTGTATAAAAGTATAGCACTTGGAGTAT-----AGCATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAAGGAGAACATTGCTTACCTATGTTGAAAAGAGATCACCTTTCAGTGAAACTGTTGATTTGCATGCTATTGTAGAC-ATAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GGGAGTCAAAAGGAATTGAAACTCAAAGATAA-AAAA---AGAATCTCCTTGGGCATCCCAGTATGCTTCAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGATTGGAGCTA--CCCTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGACCA----T-CATGTGCAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCCTGGCTTTCCTCTTGAAAGTTTTGATGCTTCATCTATTGTTGTTAGACCAGGACTTTCA-TAGAAGTCCACATCAGTGTTCAAATGACTAATATGCTGATC-AAAAGTTTGGTGGGATGCAAATGAACTAATTTACC--------TTAAATCAGCTATTGTCACTGAGCAAATAAT-AGAGTCTTCTGTTTAAAATACTCtgtttcacttgcc---------tattgtggcatgaaaaatgaccccaaaactt-attggcttaaaacaactaccactgtatttgttcacaatta-ttttgtgggccagaattttggattcagaatagtggggatg----gcctgtctctgttctgtgatatctgggg--gcagcggcactgtcttgaatggctgggaactggctg---------------attcatatgcctggagc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47613760 900 + 74645514 aaaagtatttattgattaaaggctgtataaaagtatagcacttGGAGTAT-----AGCATTGTGAAGAATCATGgctagaataaatgaa-ttatac-------tcttaa-----tgactt------ttaaatattatgaCTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAAGGAGAACATTGCTTACCTATGTTGAAAAGAGATCACCTTTCAGTGAAACTGTTGATTTGTGTGATATTGTAgac-ataaatatttgtagagaaaTTGTTAATGTCCCTGGAATGAGGAACTAAAAGA-----------GGGAGTCAAAAGGAATTGAAActcaaagataagaaaa---ataatctccTTGGGCATCCCAGTATGCTTCAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGATTGGAGCTA--CCCTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGACCA----T-CATGTGCAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCCTGGCTTTCCTCTTGAAAGTTTTGATGCTTCATCTATTGTTGTTAGACCAGGACTTTCA-TAGAAGTCCACATCAGTGTTCAAATGACTAATATGCTGATC-AAAAGTTTGGTGGGATGCAAATGAACTAATTCACC--------TTAAATCAGCTATTGTCACTGAGCAAATAAT-AGAGTCTTTTGTTTAAAATACTCTGTTTCACTTGCC---------TATTGTGGCATGAAAAATGACCCCAAAACTT-ATTGGCTTAAAACAACTACCACTGTATTTGTTCACAATTA-TTTTGTGGGCCAGAATTTTGGATTCAGAATAGTGGGGATG----GCCTGTCTCTGTTCTGTGATATCTGGGG--GCAGCGGCACTGTCTTGAATGGCTGGGAACTGGCTG---------------ATTCATATGCCTGGAGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9882211 899 - 75148670 AAAAGTATTTATTGATGAAAGGCTGTATAAAAGTATAGCACTTGGAGTAT-----AGCATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----TGACTT------TTAAATATTATGACTAGAAGCTACGTAATAATTATGATCACCTTAATTTGTAAATGA-CTTATAGTTTCTTGGTGAAGGAGAACATTGCTTACCTATGTTGAAAAGAGATCACCTTTCAGTGAAACCGTTGATTTGTGTGCTATTGTAGAC-ATAAATATTTGTAGAGAAATTGTTAATATTCCTGGAAGGAGGAACTAAAAGA-----------GAGAGTCAAAAGGAATTGAAACTCAAAGATAAGAAAA---AGAATTTCCTTGGGCATCCCAGCATGCTTCAGTGAGGAGCAGGGGATG--CCCTGAC--TCCAGATTGGAGCTA--CCGTGCTTGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCCGTGACCA----T-CATGTGCAATGGCTTTACTCTCTACCATCTCTGAAGAGGGTAG-----------------------ACCCTGGCTTTTCTCTTGAAAGTTTTGATGCTTCATCTATTGTTATTAGACCAGGACTTTCA-TAGAAGTCCACGCCAGTGTTAAAATGACTACTATGCTGGTC-AAAAGTCTGGTGGGATGCAAATGAACTAGTTCAGC--------TTAAATCAGCTGTTGTCACTGAGCAAATAAC-AGAGTCTTCTGTTTAAAATATTCtgtttcacttgcc---------tattgtggcatgaaaaatgaccccaaaactt-actggcttaaaacaactaccattgtattt-ttcacaatta-ttttgtgggccagaattttggattcagaatagtggggatg----gcctgtctctgttctgtgatgtctgggg--gcagcagcactgtcttgaatggctgggaactggctg---------------attcatatgcctggagc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112726302 913 + 159171411 AAAAGTACTTATTGATTAAAGGCTGTACAAAAGTATAGCATTCAAAGTACTGTGAAGTATTGTGAAGAATCATGGCTAGAATAAATGAA-TTATAC-------TCTTAA-----CGACTT------TTAAATATTATGACTAGGAGCTACATAATAATTATGATCACCTCAATTTGTAAATGA-CTTATAGTTTTTTGGCGAAGGAGAACATTGCTTACTTATGTTGAAAACAGATCACCTTT-AGTGAAACTGTTGATTTATG----------GGC-AAAAATATTTGTAGAGAAATTGTTAATGTCCCTGGAATGAGGAACTAAAACA-----------CAGAGTCAAAAGGAATTGAAACTTGAAGATAAGAAAA---AGAATTTACTTGGGCATCCGAGCATGTTAGAGTGGGGAGCAGGGGAAG--CCCCCTC--TCCAGGTTGGAGTTA--CCCTGC-TGGTCC-CACTTGGGAAGGAGCAGAGAGGAGAGCTGTGAATATCATT-CATGGGCAATGGCGTTACTCTCTGCTGTCTTTGAAGAGGGTAG-----------------------ACTCTGGCTTTTCTCTTGTGAG-TTTGATGCTTCATCTATTGCTATTAGACCAGGACTTTCT-TGGAAGTCCATGTCAGTGTTAAAATGACTAATATTCTAGTC-AAAAATTTGGTGGCATGCAAATGAACTAGATTACC--------TTAAATCAACTATTGTCACTGAGCATGTAACAAGAGTCTTCCGTTTAAAATACTGtatttcacttgcc---------tattgctgtttgaaaaacaatcccaaaacttaaccagcttaaaacaaccatcattttatttgttcacaattatttttgtgggccagaattttggattcgaaatagtgaggatg----gcctgttcctgctctgtgatgtccggga--gcagctgcactgtcttaaatggctgggaactggctgggatggcttgactc-agtcatatgcctggagc i calJac3.chr5 C 0 C 0 s mm10.chr11 99473320 881 + 122082543 aaAAGCATTTATTGATTAAAGATCGTA----------------AGAGTCT-----AGC-----------------CCAGAATGAAGGAGTTTTTAA-------TCCCAAGGTATTAACAA------CTGATTAATGTAACTGGGAGTCAT-TGAGGGTCACGATCATCTC-ATCCTTGAATGG-TAT-TACCCTCCAGGTGGAGG----------CTGCCTGTGTTGAAATG-GATCGCCCTGCGATGAAAC--TCCATCTGTGTGACACTGAGAGCGATGAATATTTATAGGGAAATTATTAACGTCTGTGGAATGAGG----AAGGCA-----------AACAGTCGGAAGCAATTGAAACTCAAAGATAA---------GAATCCACTTGGACATCCCAGCATGCTCTGG-GAGGAGCAGGCGTTC--TCTCTCCTGTTCAGGCTAGAGTCAACCACTGCTTGTCCC-CTCATGGGACAGGGCAGAGAGGGCAGCTATGAAAA----CACAGGGGAAGTGGCTTTATTCTCTATGGTCTTTGAGGAGGGCAGACCTCAGCTTCTGAGGAGGGCAAACCTTAGCTTCTTTCTC------TTTGATGCTTCACCTGTCTCTGTTGAACCAAGACTTCTG-GAAAGTTCCATTTGAGTGTTAA------CAAAAGGTTCCTC-TGAGTCTCAATGGGATAAAAATGTACTTTTTAGCTATGGTAAAATAAATCAGCTACTGTCATCGGGCAAATACT---ATTTTTGTATTTAAGACACTCCGATTTTCTCGTCTGCTttagttatttctatataagaaataa-cacaaacgtt-atgagctt-aaacaact--ctttttatttgttctcaattt--------------aattttgtgcttagcaccgtaggactgtattgtctgtctctgctctgtgatgtctggggcctcagttg-attggcacgaatggttgaggTCTCGCTGGAACAGGAGGACCCAAGCCATGTATTGAGAGC i mm10.chr11 I 630 I 100 s canFam3.chr9 39293983 906 - 61074082 GAAAGTATTTATTGAT------------------------ATGAGAGTAT-----AGCATAGTAAAG---CATATCTAGAACAAATGGA-CAATATATAAGGGTCTTAA-----TGACTTAAAAACTTAAACATTATAACTAAGAGCTACCTGATAATTATGATCATTTTAACCCATAAAAGGCCTTATAGTTTCTAGGTGAAGGAGAACTTCACTTACCTATATTGAAAACAGATCAGC----AGTGAAGTTTTTTATCTGTGTGATACTGTTAGC-----ATATTTATAGAGAAGCTGTTAATGTCCCTGGAATCAGGAACTTAAAGACAAAAGGAACCAAAAGTCAAAAGGAATCAAAACTCAATGAGAAGAAGAAGGAGAATTTACCTGGGCATCCCAGCATGCTCGAGTGAAGAGCAGGGGATGTTTCTCCAT--TCTGGGTTGGAGTTA--TAGTGCTTGGTCCTCATTTGTGAAGAGGCAGGGAGGAGAGCTCTAAACA------AACATACA-TGGCTTTACTCCCTGCTGTCTCTGAAGAGTGAGG-----------------------ATCTTGACTTTTCTCTTGGATACTTTGGTGCTTCATCTATGGTTATTGGACCAGGACTTCCA-CAGAGATCCATTTCACTGTTAAAATGACTGAAATCCTGGTTGAAAGGTTTGGTGGGAGACTTTTCTTTTTAATAGGC--------TTAAACCAGCTATTGTCACTGAGCAAATAAT-AGACTCTT--ATTTTAAATACTCTATTTTg-ttatc---------catggttatatgaaaaactattcccaaactt-actagcttaaaacaaccactattttatttgttcatag----ttttgtggatcagaatttcagattcagaatgtcggggatg----gcttatctctgctccatgatgcctggggcctcagcctgtttggcttaaatggctgggaactggctgcaatggctagaacagagtcatgtgtctggaac i canFam3.chr9 C 0 C 0 a score=1135729.000000 s hg38.chr17_JH159146v1_alt 65765 354 + 278131 ctcagttacagctgttgcctggagcttcagttatggctgttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcacagtatggt-gtctcagggtaattgaacttctcacatggtagctggctgcctataggg--cattccaagaga--ataactcccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttgatgttcc-attggccaaatcaagtctcatgaccaagcccagcgtcaatgtgggaggcagtagagaaaggcctgactgctggaggcatggatgcattggggccaccaatatgtacagcataccCAGAAAAT s panTro4.chr17 66185650 354 - 82630442 ctcagttacagctgttgcctggagcttcagttatggctgttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcacagtatggt-gtctcagggtaattgaacttctcacatggtagctggctgcctataggg--cattccaagaga--ataacccccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttgatgttcc-attggccaaatcaagtctcatgaccaagcccagcgtcaatgtgggaggcactagagaaaggcatgactgctggaggcatggatgcattggggccaccaatatgtacagcataccCAGAAAAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24715547 329 - 73212453 ctcagttac-------------------------ggctgttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcacagtacggt-gtctcagggtaattgaacttctcacaaggtagctggctgcctataggg--cattccaagaag--ataacccccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttggtattcc-attggccaaatcaagtctcatgtccaagcccagtgtcaatgtgggaggcactagagaaaggcatgactgctggaggcatggattcactggggccaccaatACCTACAGCATACCCAGAAAAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47935659 329 - 81552678 ctcagttac-------------------------ggctgttgcctggattcctcagcttttcttggtgtgggctctccaagaggctagcttagacttcctcacagtatggt-gtctcagggtaattgaacttctcacatggtagctggctgcctataggg--cattccaagagg--ataacccccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttgatgttcc-attggccaaatcaagtctcatgaccaagcccagcgtcaatgtgggaggcactagagaaaggcatgactgctggaggcatggattcattggggccaccaatatCTATAGCATACCCAGAAAAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53046767 330 + 80904711 ctcagttaa-------------------------ggctgttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcatagtatggt-gtctcagggtaattgaacttctcacatggtagcaggctgcccataggg--cattccaagagg--ataacccccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttgatgttcctattggccaaatcaagtctcattaccaagcccagcatcaacgtgggaggcgctagagaaaggcatgactgctggaggcatggattcattggggccaccaatACCTACAGCGTACCCAGAAAAT i rheMac3.chr16 C 0 I 259 s macFas5.chr16 52569624 330 + 80997621 ctcagttaa-------------------------ggctgttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcatagtatggt-gtctcagggtaattgaacttctcacatggtagcaggctgcccataggg--cattccaagagg--ataacccccaatgtgaaagcatttagtaagcctctgcttgtgtcaagcttgttgatgttcctattggccaaatcaagtctcattaccaagcccagcatcaacgtgggaggcgctagagaaaggcatgactgctggaggcatggattcattggggccaccaatACCTACAGCGTACCCAGAAAAT i macFas5.chr16 C 0 I 259 s papAnu2.chr16 47614660 330 + 74645514 CTCAGTTAA-------------------------GGCTGTTGCCTGGATTCCTCAGCTTTCCTTGGTGTGGGCTCTCCAAGAGGCTAGCTTAGACTTCCTCATAGTATGGT-GTCTCAGGGTAATTGAACTTCTCACATGGTAGCTGGCTGCCCATAGGG--CATTCCAAGAGG--ATAACCCCCAATGTGAAAGCATTTAGTAAGCCTCTGCTTGTGTCAAGCTTGTTGATGTTCCTATTGGCCAAATTAAGTCTCATGACCAAGCCCAGCGTCAACGTGGGAGGCGCTAGAGAAAGGCATGACTGCTGGAGGCATGGATTCATTGGGGCCACCAATACCTACAGTGTACccagaaaat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9883110 329 - 75148670 ctcagttaa-------------------------ggcttttgcctggattcctcagctttccttggtgtgggctctccaagaggctagcttagacttcctcatagtatggt-gtctcagggtaattgaacttctcacatggtagctggctgcctataggg--cattgcaagagg--ataacccccaatgtggaagcatttagtaagcctttgcttgtgtcaagcttgttgatatttctattggccaaatcaagtctcatgaccaagcccagcatcagcgtgaga-gcactagagaaaggcatgactgctggaggcatggattcactggggccaccaatACCTACAGCGTACCCAGAAAAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112727215 327 + 159171411 ctcagttat-------------------------ggctgttgtcttgactcctcagctttgcttggtgtgggctctccaagaggctagcttagactttgtcacagtatgat-gtctcagggtaatttaacttctcacatggtagctggcttcctacaggc--cattccaagagg--ataacccccaaagtgcaagcatttagtaagcctctgcttgtggcaagcttgctgatgttcc-attggccaaatc--gtctcatgaccaaacccagcatccgtgtgggaggccctacagaaaggcatgagtgctggaggcatgaattcattggggttactgatatctacagcataccCAGAAAAT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39294889 317 - 61074082 ttcagttat-------------------------ggc------ctggattcctcagttttcc---atgtggcctctctgttaggctagcttagacttcctcacagcagggtaggctcagagtaaatgaacttctcatatggcagctggcttcctagagggaacattctaagaagatataagccccagtgtgtaagcatttattaagcttctgctggtgtcttgcttgctgatgtttt-gttggcaaaatcaagtcatttggtcaagctcagagtctatgtgggaaagactacagaaaggcttgagacctggtggtgtgggttcactggggctaccagtatctac------tacaGAAA-- i canFam3.chr9 C 0 C 0 e mm10.chr11 99474201 100 + 122082543 I a score=751744.000000 s hg38.chr17_JH159146v1_alt 66119 244 + 278131 AAAACCATTATTTAAATGAGAAATTTAAATGCACATTTATAAATTTTTAAATTTACCATTATAA------------------------------------------ATAATGATATTATTTACTATCTGTTTTCTGTTGTGCAAGACCAAATAGGTATATGTGAAACTATGGTACA-AATTGCTTCATGTCCATGAAGGGTATGCTTAGAAATATGTTATTTT--ATCCCAAAGAAATGGCACGCTATATTATTTCACACAAAGTAAACTATTC--AAAATCTCTAAGCTA s panTro4.chr17 66186004 244 - 82630442 AAAACCATTATTTAAATGAGAAATTTAAATGCACatttataaatttttaaatttaccattataa------------------------------------------ataatgatattatttaCTATCTGTTTTCTGTTGTGCAAGACCAAATAGGTATATGTGAAACTATGGTACA-AATTGCTTCATGTCCATGAAAGGTATGCTTAGAAATATGTTATTTT--ATCCCAAAGAAATGGCACGCTATATTATTTCACACAAAGTAAACTATTC--AAAATCTCTAAGCTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24715876 244 - 73212453 AAAACCATTATTTAAATGAGAAGtttaaatatacatttataaatttttaaatttaCCATTATAA------------------------------------------ATAATGGTATTATTTACTATCTGTTTTCTGTTGTGCAAGACCAAATAGGTATATGTGAAACTATGGTACG-AATTGCTTCATGTCCATGAAAGGTATTCTTAGAAATATGTTATTTT--ATCCCAAAGAAATGGCACGCTGTATTATTTCACACAAAGTAAACTATTC--AAAATCTCTAAGCTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47935988 244 - 81552678 AAAACCATTATTTAAATGAGAAATTTAAATATACATTTATAAATTTTTAAATTTACCATTATAA------------------------------------------ATAATGGTATTATTTACTATTGGTTTTCTGTTGTGCAAGACCAAATAGGTATATGTAAAACTATGGTACA-AATTGCTTCATGTCCGTGAAAGTTATGGTTAGAAATATGTTATTTT--ATCCCAAAGAAATGGCATGCTATATTATTTCACACAGAGCAAACTATTC--AAAATCTCTAAGCTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53047356 241 + 80904711 AAAACCATTGTTTAAATGTGAAATTTAAATACACttttataaatttttaaatttaCTGTTATAA------------------------------------------ATAATGGTATTATT---TATCCGTTTTCTGTTGTGCAAGACCAAATAGGTACATGCGAAACTGTGGTACA-AATTGCTTCATGTCCATGAAAGGTATGGTTAGAAAGATGTTATTTT--ATCCCAAAGAAGTGGCATGCTGTATTATTTCACACAAAGTGAACTATTC--AAAATCTCTAAGCTA i rheMac3.chr16 I 259 C 0 s macFas5.chr16 52570213 241 + 80997621 AAAACCATTGTTTAAATGTGAAATTTAAATATACTTTTATAAATTTTTAAATTTACTGTTATAA------------------------------------------ATAATGGTATTATT---TATCCGTTTTCTGTTGTGCAAGACCAAATAGGTACATGCAAAACTGTGGTACA-AATTGCTTCATGTCCATGAAAGGTATGGTTAGAAAGATGTTATTTT--ATCCCAAAGAAGTGGCATGCTGTATTATTTCACACAAAGTGAACTATTC--AAAATCTCTAAGCTA i macFas5.chr16 I 259 C 0 s papAnu2.chr16 47614990 241 + 74645514 aaaaccattatttaaatgagaaatttaaatatacttttataaatttttaaatttactgttataa------------------------------------------ataGTGGTATTATT---TATCCGTTTTCTGTTGTGCAAGACCAAATAGGTATATGCGAAACTGTGGTACA-AATTGCTTCATGTCCATGAAAGGTATGGttagaaatatgttatttt--atccCCAAGAAATGGCATGCTGTATTATTTCACACAAAGTAAACTATTC--AAAATCTCTAAGCTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9883439 241 - 75148670 AAAACCATTGTTTAAATGAGAAATTTAAATATACTTCTATAAATTTTTAAATTTACTGTTATAA------------------------------------------ATAATGGTATTATT---TATCCGTTTTCTGTTGTGCAAGACCAAATAGGTATATGCGAAACTGTGGTACA-AATTGCTTCATGTCCATGAAAGGTATGGTTAGAAAGATGTTATTTT--ATCCCAAAGAAATGGCATGCTGTATTATTTCACACAAAGTGAACTATTC--AAAATCTCTAAGCTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112727542 288 + 159171411 AATACTGttatttaaataataaatttaaatatccatttacaaatttttaaatttaCCATTATAAAAATGGTATTATTTATCCTTGGTCTTCTAGTGGCTAGAAAATAAAATGGTATTATTTACTATTAGTTTTCTGTTGTGAAAGACCACATAGGTATATGTGAAACTATGGTACA-AGTTGCTTCATGTCCATGAAAGCTATGGTTAGAAATATGTTATTTT--ATCCCAAATAAATGGCATGCTCTATTATTTCACACAAAGTAAACTTTTTTAAAAATCTCTAAGCTA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39295206 182 - 61074082 ------------------------------------------------------------GAAA------------------------------------------ATTTTGCTATTAATTAGTATCCATTTTCTATTGTGAAAGGATAGATAAGTGTATATTCAACTATGGTACAGAATTGCTTTATGTACATAAAATGTATTTTTAGA-----GTTACTTTTAATCCCAAAGAAATGATATGTTATATCATTTGACACAATGTAAACTTTAA--AAAATCTCTAGTCTG i canFam3.chr9 C 0 C 0 e mm10.chr11 99474201 100 + 122082543 I a score=271906.000000 s hg38.chr17_JH159146v1_alt 66363 94 + 278131 ggccgagtgtggtggctcatgcctgtaatcccagcactttgggaagccaaggtgggtgggtcacttgagcccaggagttcaagaccagcctagg s panTro4.chr17 66186248 94 - 82630442 ggccaagtgtggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacttgagcccaggagttcaagaccagcctagg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24716120 94 - 73212453 ggccaagtgcggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcgggttgcttgagcccaggagttcaagaccagcctagg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47936232 94 - 81552678 ggccaagtgtggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcgggtcgcttgagcccaggagttcaagaccagcctagg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53047597 94 + 80904711 ggccgagtgtagtggctcacgcctataatcccaccactttgggaggccaaggagggatggccgtttgagcccaagagttcaaggccagtctaga i rheMac3.chr16 C 0 I 181 s macFas5.chr16 52570454 94 + 80997621 ggccgagtgtagtggctcacgcctataatcccaccactttgggaggccaaggagggatggccgtttgagcccaagagttcaaggccagtctaga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47615231 94 + 74645514 GGCCAAGTGTagtggatcatgcctataatcccagcactttgggaggccaaggtgggatggtcgtttgagcccaggagttcaaggccagtctagg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9883680 94 - 75148670 ggccgagtgtagtggctcacgcctataatcccagcactttgggaggccaagatgggatggtcgtttgagcccaggagttcaaggccagtctagg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112727830 94 + 159171411 ggccaagtgtgatggctcacttctgtaatcccagcactttgggaggccaaggtgggtggattgcttgagcccaggagttcaagaccagtctgag i calJac3.chr5 C 0 C 0 e canFam3.chr9 39295388 0 - 61074082 C e mm10.chr11 99474201 100 + 122082543 I a score=420130.000000 s hg38.chr17_JH159146v1_alt 66457 183 + 278131 caacatggcgaaaccctgtctctac-aaaaaatacaaaaattagccaggcatgatggtgtgtgtctgtagtcatagctacttgggagggtgaggtgggaagatggcttgagcctgcaaggttgaggctgcagtgagctgagatcatgcccctgccctccagcctgggtgac-agaatgagggagg s panTro4.chr17 66186342 183 - 82630442 caacatggcgaaaccctgtctctac-aaaaaatacaaaaattagccaggcatgatggtgtgtgtctgtagtcatagctacttgggagggtgaggtgggaagatggcttgagcctgcaaagttgaggctgcagtgagctgaggtcatgcccctgccctccagcctgggtgac-agaatgagggagg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24716214 183 - 73212453 caatgtggtaaaaccctgtctctac-aaaaaatacaaaaattagccaggcatgatggtgtgtgtctgtagtcctagctacttgggagggcgaggtgggaagatggattgagactgcgaggttgaggctgcagtgagctgggatcatgcccctgccctccagcctgggtgac-agaatgagggagg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47936326 183 - 81552678 caatgtggcgaaaccctgtctctat-aaaaaatacaaaaattagccaggcatgatggtgtgtgtctgtagtcctagctacttgggagggtgaggtgggaagatggcttgagcctgcaaggttgaggctgcagtgagctgagatcatgcccctgccctccagcctaggtgac-agagtgagggagg i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52570548 184 + 80997621 caacatggcgaaacccagtctctccaaaaaaatacgaaaattagctgggcatgatggtgtgtgtctgtagtcctagctacttgggagggtgaggtgggaagatggcttgagcctgtgaggttgaggctgcagtgagctgagatcatgtccctgccctccagcctgggtgac-agagtgagggagg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47615325 185 + 74645514 caacatggcgaaacccagtctctacaaaaaaatacaaaaattagccgggcatgatggtgtgtgtctgtagtcctagctacttgggagggtgaggtgggaagatggcttgagcctgtgaggttgaggctgcagtgagctgagatcatgtccctgccctccagcctgggtgacaagagtgagggagg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9883774 183 - 75148670 caacatggcgaaacccagtctctacaaaaaaatacaaaaattagccaggcatgatggtgtgtgtctgtagtcctagctacttgggaaggtgaggtgggaagatggcttgagcctgtgaggttgaggctgcagtgagctgagatcatgtccctgccctccagcctgggtgac-agagtgagggag- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112727924 179 + 159171411 caacatggcgaaatcctggctctgc-agaaaatacaaaaattagccaggcatggtgttgtgtgcctgtagtcgcagctacttgggaggctgaggtgggaagatgacttgagcctggaaggttggggctgcagtgagctgagattacgcccctggcttctagcctgggtgac-agaataagg---- i calJac3.chr5 C 0 C 0 e canFam3.chr9 39295388 0 - 61074082 C e mm10.chr11 99474201 100 + 122082543 I e rheMac3.chr16 53047691 181 + 80904711 I a score=965143.000000 s hg38.chr17_JH159146v1_alt 66640 362 + 278131 ccctgtt---------------t----------aaaaaaaaaaaaaaaaaaaaggaaaaGGAGAAGAAGAAGTCTCTTCTTAGCACTAAATATCTAAA-------TGTAGTCTGTGTTAAGTAACCCACTTACAGCTATCTGTAAAGAAAAATCTAATCTTTCGTACATACCTCTGGCTTACTTTTTTCTTATAATTATGGACATTTTTTCATATTGGTTCCAGCTTAGAGAGTGCATAAGTTATTTTGGCTTTTCAGTAGTTCATACATTTATAATTGTTATTTTTAATTTGCTATGAATTAAAAAATATGGTATGTTTTCTTCAATTCTGATGTTTTTATATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCAGGAGGGCT s panTro4.chr17 66186525 368 - 82630442 ccctgtt---------------t----agaaaaaaaaaaaaaaaaaaaaaaaaggaaaAGGAGAAGAAGAAGTCTCTTCTTAGCACTAAATATCTAAA-------TGTAGTCTGTGTTAAGTAACCCACTTACAGCTATCTGTAAAGAAAAATCCAATCTTTCGTACATACCTCTGGGTTACTTTTTTCTTATAATTATGGACATTTTTTCATATTGGTTCCAGCTTAGAGAGTGCATAAGTTATTTTGGCTTTTCAGTAGTTCATACATTTATAATTGTTATTTTTAATTTGCTATGAATTAATAAATATGGTATGCTTTCTTCAATTCTGATGTTTTTATATGATGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCAGGAGGGCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24716397 368 - 73212453 ccctgtt---------------c--------aaaaaaaaaaaaaaaaaaaaaaggaaaaGGAAAAGAAGAAGTC---TCTAAGCACTAAATGTCTAAATGTAGTCTGTAGTCTGTGTTAAGTAACCCACTTACAGCTATCTGTAAAGAAAAATCCAATCTTTCGTACATACCTCTGGCTTACTTTTTTCTTATAATTATGGACATTCTTTCATATTGGTTCCAGCTTAGAGAGTGCATAAGTTATTTTGGCTTTTCAGTAGTTCATACATTTATAATTGTTATTTTTAATTTGCTATGAATTAAAAAATACAGTATGCTTTCTTCAATTCTGATGTTTTCATATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCAGGAGGGCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47936509 356 - 81552678 ccctgtt---------------t-------------aaaaaaaaaaaaaaaaaggaaaaggaaaaGAAGAAGTC---TCTAAGCACTAAGTGTCTAAA-------TATAGTCTGTGTTAAGTAACCCACTTACAGCTATGTGTAAAGAAAAATCAGATCTTTTGTACATACCTCTGGCTTACTTTTTTCTTATAATTATGGACATTTTTTCATATTGGTTCCAGCTTAGAGAGTGCATAAGTTGTTTTGGCTTTTCAGTAGTTCATACATTTATAATTGTTATTTTTAATTTGCTATGAATTAAAAAATACAGTATGCTTTCTTCAATTCTGATGTTTTCTTATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCAGGAGGGCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53047872 358 + 80904711 ccttgtt--------------------aaaaaaaaaaaaaaaaaaaaaaaaaaGGAAAAGGTAAAGAAGAAGTC---TGTAAGCACTAAATGTCTAGA-------TGTAGTCTGTGT----TAACGCACTTATAGCTATCTGTAAAGAAAAATCCAATCTTTCATACATACCTCTGGCTTACTTTTTTCTTATAATTATTGACGTTTTTTCATATTGGTTCCAGCTTAGAGAGGGCATAAGTTATTTTGGCTTTT-GGTAGTTCATACATTTATAATTGCTATTTTTAATTTGCTATGAATTAAAAAATACAGTATGCTTTCTTCAATTCTGCTGTTTTCATATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCA-GAGGGCT i rheMac3.chr16 I 181 C 0 s macFas5.chr16 52570732 378 + 80997621 ccctgttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaggtaaagaagaagTC---TGTAAGCACTAAATGTCTAGA-------TGTAGTCTGTGT----TAACGCACTTATAGCTATCTGTAAAGAAAAATCCAATCTTTCATACATACGTCTGGCTTACTTTTTTCTTATAATTATTGACGTTTTTTCATATTGGTTCCAGCTTAGAGAGGGCATAAGTTATTTTGGCTTTT-GGTAGTTCATACATTTATAATTGCTATTTTTAATTTGCTATGAATTAAAAAATACAGTATGCTTTCTTCAATTCTGCTGTTTTCATATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCA-GAGGGCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47615510 348 + 74645514 ccctgtt-----------------------------aaaaaaaaaaaaaaaaaggaaaaggtaaagaAGAAGTC---TGTAAGCACTAAATGTCTAGA-------TGTAGTCTGTGT----TAACGCACTTATAG--ATCTGTAAAGAAAAATCCAACCTTTCATACATACCTCTGGCttacttttttcttataattattgaCATTTTTTCATATTGGTTCCAGCTTAGAGAGTACATAAGTTATTTTGGCTTTT-GGTAGTTCATACATTTataattgctatttttaatttactatgaattaaaaaatacagtatgcTTTCTTCAATTCTGCTGTTTTCATATGTTGAAGATGCTGGAATGGATAGGAATGAGACCTGAGTCCCAGGAGGGCT i papAnu2.chr16 C 0 I 321 s chlSab2.chr16 9883957 364 - 75148670 ccctgtt---------------ccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGAAAAGGTAAAGAAGAAGTC---TCTAAGCACTAAATGTCTAGA-------TGTAGTCTGTGT----TAACCCACTTATAGCTATCTGTAAAGAAAAATCCAATCTTTCGTACATACCTCTGGCTTACTTTTTTCTTATAATTATTGACATTTTTTCATATTGGTTCCAGCTTAGAGAGTGCATAAGTTATTTTGGCTTTT-GGTAGTTCATATATTTATAATTGCTATTTTTAATTTGCTATGAATTAAAAAATACAGTATGCTTTCTTCAATTCTGCAGTTTTCATATGTTGAAGATGCTGGAATGGATAAGAATGAGACCTGAGTCCCAGGAGGGCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112728103 314 + 159171411 ccctgtt-----------------------------aaaaaaaaaaa----------------------aaGTC---TCTAAG----------CTAAA-------TGTAGTCTGTGTTAAATAATCCACTTATGTCTATCTGTAAAGAGAAATCCGATCCTTCGTACCTACCTCTGGCTTACTTTTTTCTTATAATTATTGACATTTTTATATAGTGGTTCCCGCTTAGAGAGTGCATAAGTTATTTTGGCTTTC-AATAGTTCATCCATTTATAATTGTTATTTTTAATTTGCTATGAATTAAACAATACAGTATGCTTTCTTCAGTTCTGGTGTTTTC--ATGTCGATGATACTGGAATGAATAG------GACCTGAGTCCCAGGGGGGCT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39295388 0 - 61074082 C e mm10.chr11 99474201 100 + 122082543 I a score=585650.000000 s hg38.chr17_JH159146v1_alt 67002 200 + 278131 TGGATAACTTTTCTAGTCTTTTGATTCCTTATCTCTCACATAAGAAGTTTCAATCAGTTGATTTCTATGTTTACTTTTAATGCTGATATTTTTGATTTCAAATTACATGTAATGCCCTAATTAACTATTTAGAGAAATATAAAATGTGCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGAAA--AAAATTGCT s panTro4.chr17 66186893 200 - 82630442 TGGATAACTTTTCTAGTCTTTTGATTCCTTATCTCTCACATAAGAAGCTTCAATCAGTTGATTTCTATGTTTACTTTTAATGCTGATATTTTTGATTTCAAATTACATGTAATGCCCTAATTAACTATTTAGAGAAATATAAAATGTGCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGAAA--AAAATTGCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24716765 200 - 73212453 TGGATAACTTTTCTAGTCTTTTGCTTCCTTATCTCTCAAATAAGAAGCTTCAATCAGTTGATTTCTATGTTTACTTTTAATGCTGATATTTTTGATTTGAAATTACATGTAATGCCCTAATTAACTATTTAGAGAAATATCAAATGTGCATTTGGGAAATATTAAAATAACCTGATATTTCTTTAAGGAAA--AAAATTGCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47936865 200 - 81552678 TGGATAACTTTTCTAGTCTTTTGCTTCCTTATCTCTCAAATAAGAAGCTTCAATCAGTTGATTTCTATGTTTACTTTTAATGCTGATATTTTTTATTTGAAATTACATGTAATGCCCTAATTAACTATTTAGAGAAATATAAAATGTGCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGGAA--AAAATTGCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53048230 200 + 80904711 TGGACAACTTTTCTAATCTTTTGCTTCCTTATCTCTCAAATAAGAAGCTTCGATCAATTGATTTATATGTTTATTTTTAACGCTGATATTTTTGATTTGAAATTACATGTGATGCTTTAATTAACTATTTAGAGAAATATAAAATGTTCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGAAA--AAAATTGCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52571110 200 + 80997621 TGGACAACTTTTCTAATCTTTTGCTTCCTTATCTCTCAAATAAGAAGCTTCGATCAATTGATTTATATGTTTATTTTTAATGCTGATATTTTTGATTTGAAATTACATGTGATGCTTTAATTAACTATTTAGAGAAATATAAAATGTTCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGAAA--AAAATTGCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47616179 198 + 74645514 tggacaaCTTTTCTAATCTTTTGCTTCTTTATCTCTCAAATAAGAAGCTTCGATCAAttgatttatatgtttatttttaacgCTGATATTTTTGATTTGAAGTTACATGTGATGCCTTAATTAAc--tttagagaaatataaaatgttcatttggaaaatactaaaataatctgatatttctttaaggaaa--aaaattgct i papAnu2.chr16 I 321 C 0 s chlSab2.chr16 9884321 196 - 75148670 TGGACAACTTTTCTAATCTTTTGCTTCCTTATCTCTCAAATAAGAAGCTTCGATCAATTGATTTATATGTTTATTTTTAACGCTGATATTTTTGATTTGAAGTTACATGTGATGCCTTAATTA----TTTAGAGAAATATAAAATGTTCATTTGGGAAATACTAAAATAATCTGATATTTCTTTAAGGAAA--AAAATTGCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112728417 198 + 159171411 TGGATAACTTTTCCAGGCTTTTGTTTCCTTGTCTCTCAAATAAGAAGCTCCAATCAATGGATTTCTATGTTTACTTTTAATGCTGATATTTTTGATTTGAAATTACATGTAATGCCTTAAGTA----TTTAGAGAAATATAAAATGTGCATTTGGGAAATAACAAAATAATCTGATACTTCTTTAAGGAAAACAGAATTCCT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39295388 0 - 61074082 C e mm10.chr11 99474201 100 + 122082543 I a score=964570.000000 s hg38.chr17_JH159146v1_alt 67202 303 + 278131 TCTTTATTCCTTAAATTAATTTTTTA----GTCACTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACATTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGAGTCTAAAATAACAC-ACAA-----ATTTCCATAAGAGAAACTTACTACAGGAA----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAGGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAtttccttgtc--------ttttttttccagacagatctt s panTro4.chr17 66187093 303 - 82630442 TCTTTATTCCTTAAATTAATTTTTTA----GTCACTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACATTACTATTTTACTTTGCTTTG---ACAAAAATCTGAGAGGTAAAAGAAATGAGGAGTCTAAAATAACAC-GCAA-----ATTTCCATAAGAGAAACTTACTACAGGAA----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAGGTGGAAGTATGCTTGCAGAATTTTGTAAAATAttttt------------ctgattttcttgtc--------ttttttttccagacagatctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24716965 304 - 73212453 TCTTTGTTCCTTAAATTAATTTTTTA----GTCATTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACATTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAACGAGGAGTCTAAAATAACACAGCAA-----ATTTCCATAAGAGAAACTTACTACAGGAG----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAGGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttgtc--------ttttttttccagacagatctt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47937065 310 - 81552678 TCTTTATTCCTTAAATTAATTTTTCA----GTCACTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACACTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGAGTCTAAAATAACACAGCAA-----ATTTCCATAAGAGAAACTTACTACAGGAG----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTGGACTTAGGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttgtcttt--tttttttttttccagacagatctt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53048430 312 + 80904711 TCTTTGTCCTTAAAGTTAATTTTTTA----GTCTCTTGGCTTAGAGATGTTTTCTTCATGGGTCTTTTATTTGCATATATTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGCGGCTAAAATAACACAGCAA-----ATTTCCATAACAGAAACTTACTGCAGGAG----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAAGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttttcttttcttttcttttTTCCagacagatctt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52571310 312 + 80997621 TCTTTGTCCTTTAAGTTAATTTTTTA----GTCTCTTGGCTTAGAGATGTTTTCTTCATGGGTCTCTTATTTGCATATATTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGCGGCTAAAATAACACAGCAA-----ATTTCCATAACAGAAACTTACTGCAGGAG----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAAGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttttcttttcttttcttttttccagacagatctt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47616377 312 + 74645514 tctttgtcccttaagttaatttttta----gtCACTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACATTACTATTTTACTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGCGGCTAAAATAACACAGCAA-----ATTTCCATAACAGAAACTTACTACAGGAG----CCTAacactttggaaaaatatttgattaagtaCCTGGAAGAATTTTGCTAGACTTAAGTGGAAGTATGCTTGCAgaattttgtaaaatactttt------------ctgattttcttttcttttcttttcttttttccagacagatctt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9884517 311 - 75148670 TCTTTGTCCCTTAAGTTAATTTTTTA----GTCACTTGGCTTAGAGATGTTTTCTTGATGGGTCTCTTATTTGCATACATTACTATTTTGCTTTGCTTTG---ACAAAAATCTAAGAGGTAAAAGAAATGAGGCGGCTAAAATAACACAGCAA-----ATTTCCATAACAGAAACTTACTACAGGAG----CCTAACACTTTGGAAAAATATTTGATTAAGTACCTGGAAGAATTTTGCTAGACTTAAGTGGAAGTATGCTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttttctttt-tttttttttttccagacaggtctt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112728615 306 + 159171411 TCTTTGTTCCTTAAATTGGTTTTTTA----GTTACTTGGCTTACAGATGTTTTCTTGATGAGTCTCTTACTTGCATACATTACTAGTTTACTTTGCTGTG---ACAAAAATCTCAGAGGTAACATAAATGAAGAGGCTAAAAGAACACAGCAA-----ATTTTCATAATAGAACCTTACTATAGGAG----CCTAACACTTTGTAAAAATACTTGATTAAGTTCCTGGAAGAATTTTGCTAGACTTAGGTGAAAGTATGTTTGCAGAATTTTGTAAAATACTTTT------------CTGAttttcttttc------tttttctcccctagacagatctc i calJac3.chr5 C 0 C 0 s mm10.chr11 99474301 286 + 122082543 tttttgttgctttgttttgttttttgttttATTACCTGGCCAGGAGATACTTTCCCTG-GAGTTTCCTTTTTGCATATGTTAC-ATTTTACTTTGCTGTGGAAACAAAAGTCT------TAACAGAGATGAAGAGACTGA---------GCAACAGCCATGCTCATCACAGAAA-----TACAAGAGTCTATCTAACACCTCCGCCAAATACTAGATT------------------------ACGTAGGTGGGAGTGTGGTTGCAGAGCTTGGGAAAACACTTTTTGAAATCAAGTGTCAATTCTCTGGTC--------AGCTTTTCTTGGGCAGGGTTT i mm10.chr11 I 100 I 265 e canFam3.chr9 39295388 0 - 61074082 C a score=501860.000000 s hg38.chr17_JH159146v1_alt 67505 170 + 278131 gctgtgttgctcagctgaagtatggtgttgtgatcaaaactcactgcagcctggaactcctgggctcaagacatcctcctgccttggctcccgagtagctgggaccacaggtgcaagcctctgcactggtgaatttttaaactttttatatagacgaagtctca-ttatgt s panTro4.chr17 66187396 170 - 82630442 gctctgttgctcagctgaagtatggtgttgtgatcaaaactcactgcagcctggaactcctgggctcaaggcatcctcctgccttggctcccgagtagctgggaccacaagtgcaagcctctgcactggtgaatttttaaactttttatatagacgaagtctca-ttatgt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24717269 168 - 73212453 gctctgttgctcagctgaagtacggtgttgtgatcaaaactcactgcagcctggaactcctgggctcaagtcatcctcctgccttggctcccgagtagctgggaccacaggtgcatgcctctgcaatggtgagtttttaaac--tttgtatagacgaagtctca-ttatgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47937375 171 - 81552678 gctctgttgctcagctgaagtatggtgttgtgatcaaaactcactgcagcctggaactcctgggctcaaggcatcctcctgccttggctcccgagtagctgggaccacaggtgcatgcctctgcactggtgaatttttaaacttgttgtatagacgaagtctcatttatat i nomLeu3.chr19 C 0 I 183 s rheMac3.chr16 53048742 170 + 80904711 gctctgctgctcagctgaagtacggtattgtgatcaaacctcaatgcagcctgtaactcctgggctcaaggcatcctcctgtcttggatcccgagtagctgggaccacaggtgcatgcctctgtactggctaatttttaaactttttgtatagacgaagcctca-ttctgt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52571622 170 + 80997621 gctctgctgctcagctgaagtacggtattgtgatcaaacctcaatgcagcctgtaactcctgggctcaaggcatcctcctgtcttggatcccgagtagctgggaccacaggtgcatgcctctgtactggctaatttttaaactttttgtatagacgaagcctca-ttctgt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47616689 170 + 74645514 gctctgctgctcagCTGAAGTACGGTGTTGTGATCaaacctcactgcagcctgtaactcctgggctcaaggcatcctcctgtCTTggatcccgagtagctgggaccacaggtgcatgcctctgcactggctaatttttaaactttttgtatagacgaagtctca-ttctgt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9884828 170 - 75148670 gctctgctgctcagctgaagtacggtgttgtgatcaaacctcactgcagcctgtaactcctgggctcaaggcatcctcctgccttggatcccgagtagctgggaccacaggtgcatgcctctgcactggctaatttttaaactttttgtatagacgaagtctca-ttgtgt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112728921 170 + 159171411 actctgctgttcagctgaagtttagtgttgtgatcaaaactcactgcaacctggaactcctgggctcaaggtatcctcctgccttggctcccaagtagctgggactgtaggtgtatgcctctgccctggctaatttttaggttttctgtatagacaaagtctca-ttatgt i calJac3.chr5 C 0 C 0 e canFam3.chr9 39295388 0 - 61074082 C e mm10.chr11 99474587 265 + 122082543 I a score=547046.000000 s hg38.chr17_JH159146v1_alt 67675 183 + 278131 tgcctaggctagtctcaaactcctggcctcaagtgaacctcctgcctcagcctcccaaagtgctgggaccgcaggtgcgtgccactgtgcctggccACTAAAATACTTTTGTAAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATTCAGCTGTATTTCCTGGAAGCAGTTCTCTACAATTCT s panTro4.chr17 66187566 183 - 82630442 tgcctaggctagtctcaaactcctggcctcaagcgaacctcctgcctcagcttcccaaagtgctgggacagcaggtgcgtgccactgtgcctggccACTAAAATACTTTTCTTAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATTCAGCTGTATTTCCTGGAAGCAGTTCTCTACAATTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24717437 183 - 73212453 tgcctaggctagtctcaaactcctggcctgaagtgaacctcctgcctcagcctcccaaagtgctgggaccacaggtgtgtgccactgtgcctggccACTAAAATACTTTTCTAAGTGAAGTATTTGTCTCAGTTCTAAGTTTTAATTCAGCTGTGTTTCCTGGAAGCAGTTCTCTACAATTCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47937729 183 - 81552678 tgcctaggctagtctcaaactcctggcctcaagtgaacctcctgcctcaccctcccaaagtgctgggaccacaggtgtgtgccactgtgcctggccACTAAAATACTTTTCTAAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATACAGCTGTATTTCCTGGGAGCAGTTCTCTACAATTCT i nomLeu3.chr19 I 183 C 0 s rheMac3.chr16 53048912 181 + 80904711 tgcctaggctagtctcaaactcctggcctcaagtgaaactcctgcctcagcctcccaaagtgctggcaccacaggtgcgtgccactgtgcctggccACTAAAATACTTTTCTAAGTGAAG--TTTGTCTCAATTCTAAGTTTTAATTCAGCTGTATTTCCTGGAAGTAGTTCTCTGCAATTCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52571792 183 + 80997621 tgcctaggctagtctcaaactcctggcctcaagtgaaactcctgcctcagcctcccaaagtgctggcaccacaggtgcgtgccactgtgcctggccACTAAAATACTTTTCTAAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATTCAGCTGTATTTCCTGGAAGTAGTTCTCTGCAATTCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47616859 183 + 74645514 tgcctaggctagtctcaaactcctggcctcaagtgaaactcctgcctcagcctcccaaagtgctggcaccacaggtgcatgccactgtgcctggccactaaAATACTTTTCTAAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATtcagctgtatttcctggaagTAGTTCTCTGCAATTCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9884998 183 - 75148670 tgcctaggctagtctcaaactcctggcctcaaatgaaacgcctgcctcagcctcccgaagtgctggcaccacaggtgcgtgccactgtgcctggccACTAAAATACTTTTCTAAGTGAAGTATTTGTCTCAATTCTAAGTTTTAATTCAGCTGTATTTCCTGGAAGTGGTTCTCTGCAATTCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112729091 167 + 159171411 tgcctaggctggtctcgaactcctggcctcaagtgaacctcctgcctcagacttctaaagtgctgggaccacaggTACTTG----------------CTAAAATACTTTTCTAAGTTAAGTATTTGTCTCAATTCTAAGTTTTAATTCAGCCTTATTTCCTGGAAGCAGCTCTCTATGATTCT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39295388 0 - 61074082 C e mm10.chr11 99474587 265 + 122082543 I a score=657734.000000 s hg38.chr17_JH159146v1_alt 67858 225 + 278131 GTAAAATGAAACTCTAATCACTAGTGCT--TGGGGATTACGTCC-----------------TTTT------TTTTTCATTAGTTGTCATTAATTCCTGTTGGGAGTATTG-AAAAATTAGTAATATGGGAAACATACAAACAGATCAAAAAAGCACTCATCTGAAGGTACcagt---gtaagttcacaaacttggctgtacattataattatttgggactctttaaaacaaattgatggctgggtcccaacctc s panTro4.chr17 66187749 225 - 82630442 GTAAAATGAAACTCTAATCACGAGTGCT--TGGGGATTACGTCC-----------------TTTT------TTTTTCATTAGTTGTCATTAATTCCTGTTGGGGGTATTG-AAAAATTAGTAATATGGGAAACATACAAACAGATTAAAAAAGCACTCATCTGAAGGTACcagt---gtaagttcacaaacttggctgtacgttataattatttgggactctttaaaacaaattgatggctgggtcccaacctc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24717620 229 - 73212453 GTAAAATGAAACTCT-ATCACAAGTGCT--TGGGAATTACGTCC-----------------TTTTTTTTTGTTTTTTATTAGTTGTCCTTAATTCCTTTTGGGGGTATTG-AAAAATTAGTAATATGGGGAACATACAAACAGATTAAAAAA-CACTCACCTGAAGGTACTAAA---GTAggttcataaacttggctgtacattataattatttgggactctttaaaacaaattgatgactgggtcccaacctc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47937912 212 - 81552678 GTAAAATGAAACTCTAATCACAAGTGCT--TGGGAATTATGTCC-----------------TTTT------TTTTAAATTAGTTGTCATTAATTCCTTTTGGGGGTATTG-AAAAATTAGTAATATGGGGAACATACAAACAGATTAAAAAA-CACTCACCTGAAGGTACTAAA---GTAGGTTCATAAAC------------TATaattatttgggactttttaaaacaaattgatggccgggtcccaacctc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53049093 230 + 80904711 GTAAAATGAAACTCTAATCACAAGTGCT--TGGGAATTACGTCC-------------TTTTTTTT------TTTTTTTCCAGTTGTCATTAATTCCTGTTGGGGGTATTGAAAAAATTAGTAATATGGGGAACATACAAACAGATTAAAAAAGCACTCACCTGAAGGTACTAAA---GTAggttctcaaacttggctgcacattataattatttgggactctttaaaacaaattgatcgctgggtcccaacctc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52571975 229 + 80997621 GTAAAATGAAACTCTAATCACAAGTGCT--TGGGAATTACGTCC--------------TTTTTTT------TTTTTTTCCAGTTGTCATTAATTCCTGTTGGGGGTATTGAAAAAATTAGTAATATGGGGAACATACAAACAGATTAAAAAAGCACTCACCTGAAGGTACTAAA---GTAggttctcaaacttggctgcacattataattatttgggactctttaaaacaaattgatcgctgggtcccaacctc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47617042 228 + 74645514 GTAAAATGAAACTCTAATCACAAGTGCT--TGGGAATtacgtcc---------------tttttt------tttttttccagttgtcaTTAATTCCTGTTGGGGGTATTGAAAAAATTAGTAATATGGGGAACATACAAACAGATTAAAAAAGCACTCACCTGAAGGTACTAAA---GTaggttctcaaacttggctgcacATTATAATTATTTGGGACTCTTTAAAACAAATTGATCGCTGGGTCCCAACCTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9885181 236 - 75148670 GTAAAATGAAACTCTAATCACAAGTGCT--TGGGAATTACGTCCttttttttttttttttttttt------tttttttttAGTTGTCATTAATTCCTGTTGGGGGTATTGAAAAAATTAGTAATATGGGGAACCTACAAACAGATTAAAAAAGCACTCACCTGGAGGTACTAA----------tctcaaacttggctgcacattataattatttgggactctttaaaacaaattgattgctgggtcccaacctc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112729258 221 + 159171411 GTGAAATGAAACTCTAAGCA------CT--TGGGAATGACGCCC----------CCCCCCCTTTT------TTTTAAATTAGTTGTCATTAATTTCTGTTGGGGGTATTG-AAAAATTAGTAATATGAGGAACATACAGA-----TAAGAAAGCACTCACCTGAAGCTACTAAa---gtagtttctcaaacttggctgtacattataattatttgggactctttgaaacataatgatggttgggttccaatctg i calJac3.chr5 C 0 C 0 s canFam3.chr9 39295388 221 - 61074082 GTAAAAATGAACTCTATTTACAAGCATTAGTTGGAA----GCTC-----------------TTAT------TTTTCTATTAGCTGTCATTAATTCTTA-TGAGAATATTA-AACTATTAGTAATATGGAAAATATACAAACAAA-TACAGAAGTACTTACC-GAAGCTCCTGAAGTGGTAggttctcaaatttgggtatatgttgtaataagttggggatcttt-caacatattgat-gcctggtcccaacttt i canFam3.chr9 C 0 C 0 e mm10.chr11 99474587 265 + 122082543 I a score=852915.000000 s hg38.chr17_JH159146v1_alt 68083 321 + 278131 cacaagtactttttttttttttt-----tttttttttttttAATacagagtctggctctgttgctcaggctag---agtgcagtggcaca--------atcttgcagtcgcggctcactgcaacctctgcctcctgggtttaagtgagtttcatgcctcagcctcctgagtagctgggattacagatgcccaccaccacaccgggtaatttttgtatttttggtggagatggggtt---tcatattggccaggctggtctcatgctcctgatctcaagtgatccgcccacttcagcctcccaaagtgttgggattacaggcgtgagccatcatgcccggc s panTro4.chr17 66187974 321 - 82630442 cacaagtactttttttttgtttt-----ttgttttttttttaatacagagtctggctctgttgctcaggctgg---agtgcagtggcagg--------atcttgcaatctcggctcactgcaacctctgcctcctgggtttaagtgagtttcatgcctcagcctcctgagtagctgggattacagatgcccaccaccacaccgggtaatttttgtatttttggtggagatggggtt---tcctattggccaggctggtctcatgctcctgatcttaagtgatccgcccacttcagcctcccaaagtgttgggattacgggcgtgagccaccacgcccggc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24717849 321 - 73212453 cacaagtcctttttt----------------tttttttttaaatacagaatctggctctgttgcccaggctgg---agtgcagtggtacgatcttgcaatcttgcaatctcggctcactgcaacctctgcctcctgggtttaagtgagtttcgtgcctcagcctcctgagtagctgggattacagatgcctgccactacaccgggtaatttttgtatttttggtggagatggggtttcatcatattggccaggctggtcttgtgctcctgatctcaagtgatctgcccacttcagcctcccaaaatgttgggattacaggggtgagccaccacgcttggc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47938124 321 - 81552678 cacaaatcctttttttttttttt--------tttttttttaaatacagaatctggctctgttgcccaggctgg---agtgcagtggcacg--------atcttgcaatctcggctcactgcaacctctgcctcctgggtttaagtgagcttcgtgcctcagcctcctgagtagctgggattacagatgcccgccaccacaccgggtaatttttgtatttttggtggagatggggtttcatcatattggccaggctgatctcgtgctcctgatctcaagtgatccgcccacttcagcctcccaaagtgttgggattacaggcgtgagccaccatgctcggc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53049323 327 + 80904711 cacaagtccttttttttgtttttgtttttgttttgtcttttaatacagagtctggctctgttgcccaagctgg---agtgcagtggcatg--------atcttgcaatctcggcttactgcaacctctgcctcctaggttcaagtgcatttcgtgcctcagcctcctgagtagctgggattacagatgcccgccatcacactggctaa--tttgtatttttggtggagatgggatttcatcatattggccaggctggtcttgtgctcctgatctcaagtgatccacccacttcagccttccaaagtgttgggattacaggcgtgagccaccacgcccagc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52572204 327 + 80997621 cacaagtccttttttttgtttttgtttttgttttgtcttttaatacagagtctggctctgttgcccaagctgg---agtgcagtggcatg--------atcttgcaatctcggcttactgcaacctctgcctcctaggttcaagtgcatttcgtgcctcagcctcctgagtagctgggattacagatgcccgccatcacactggctaa--tttgtatttttggtggagatgggatttcatcatattggccaggctggtcttgtgctcctgatctcaagtgatccacccacttcagccttccaaagtgttgggattacaggcgtgagccaccacgcccagc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47617270 327 + 74645514 CACaagtccttttttttgtttttgtttttgttttgtcttttaatacagagtctggctctgttgcccaagctgg---agtgcagtggcatg--------atcttgcaatctcggcttactgcaacctctgcctcctaggttcaagtgcatttcgtgcctcagcctcctgagtagctgggattacagatgcccgccatcacactggctaa--tttgtacttttggtggagatgggatttcatcatattggccaggctggtcttgtgctcctgatctcaagtgatccacccacttcagccttccaaagtgttgggattacaggcgtgagccaccacgcccggc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9885417 288 - 75148670 cac-----------------------------------------acagagtctggctctgttgcccaagctgg---agtgcagtggcatg--------atcttgcaatctcggcttactgcaacctctgcctcctaggttcaagtgcatttcgtgcctcagcctcctgagtagctgggattacagatgcccgccaccacactggctaatttttgtatttttggtggagatgggatttcatcatattggccaggctggtcttgtgctcctgatctcaagtgatccacccacttcagcctcccaaagtgttgggattacaggcgtgagccaccacgcccggc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112729479 303 + 159171411 cacaagtcctttttt--------------------ttttttgatacagagcccagctctatcgcccaggccggagtagtgctgtggcaca--------atctcgtgatct-------ctgcaacctccgcctcctgggttc-cgtgatttttgtgcctcatcctcccaagtagcagggattacaggtgcctgcccccacactggctaatttttgtgtttttggtagagatggg-tttcatcatactgaccgggctgctctggtactcctggcctcaagtgatcctcctgcctcggcctcccaaagtgttgggattccaggtgtgagccaccatgcctggc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39295609 0 - 61074082 C e mm10.chr11 99474587 265 + 122082543 I a score=805853.000000 s hg38.chr17_JH159146v1_alt 68404 237 + 278131 caaaagtcttgatttaattattctagagtgtggcct-ggcattagaattttctcaccccctccaggtgatcctgatgtg-agccaagtttgagaacccctgCACTAAAGAAACGTCCTCGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTCGAGTCCTTACTCCTTGCTAGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCCTTTAATAATGAATTTTTATG-- s panTro4.chr17 66188295 237 - 82630442 caaaagtcttgatttaattattctagagtgtggcct-ggcattagaattttctcaccccctccaggtgatcctgatgtg-agccaagtttgagaacccctgCACTAAAGAAACGTCCTCGGGTCTCCTTCTGTTCCCCACTTTTTGCTGCCAGAATTCGAGTCCTTACTCCTTGCTAGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCCTTTAATAATGAATTTTTATG-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24718170 237 - 73212453 caaaagtcttgatttaattattctagaatgtggcctgggcattagaattttctcaccctctccaggtgatcctgatgtg-agccaagtttgaaaacccctgCACTAAAGAAACGTCCTTGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTTAAGTCCTTACTCCCTGCTAGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCC-TTAAAAATGAATTTTTATG-- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47938445 237 - 81552678 caaaagtcttgatttaattattctagaatgtggcctgggcattagaattttctcaccctctccaggtgatcctgatgtg-agccaagtttgagaacccctgCACTAAAGAAACGTCCTTGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTCAAGTCCTTACTCCCTGCTAGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCC-TTAATAATGAATTTTTATG-- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53049650 237 + 80904711 caaaagtcttgatttaattattctagaatgtggcctgggccttagaattttctcaccccctccaggtgatcctgatgtg-agccaagtttgagaaaccctgCACTAAAGAAACGTCCTTGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTTGAGTCCTTACTCCCTGCTCGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCC-TTAATAATGAATTTTTATG-- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52572531 237 + 80997621 caaaagtcttgatttaattattctagaatgtggcctgggccttagaattttctcaccccctccaggtgatcctgatgtg-agccaagtttgagaaaccctgCACTAAAGAAACGTCCTTGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTTGAGTCCTTACTCCCTGCTCGACTTTATGACCTCTTCCCTCCACATACTGTTGCTACATTCC-TTAATAATGAATTTTTATG-- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47617597 237 + 74645514 caaaagtcttgatttaattattctagAATGTGGCCTGGGCATTAGAATTTTCTCACCccctccaggtgatgctgatgtg-aGCCAAGTTTGAGAACCCCTGCACTAAAGAAACATCCTTGGGTCTCCTTCTGTTCCCCACCTTTTGCTGCCAGAATTTGAGTCCTTACTCCCTGCTCGACTTTATGACCTCTTCCCTCTACATACTGTTGCTACATTCC-TTAATAATGAATTTTTATG-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9885705 237 - 75148670 caaaagtcttgatttaattattctagaatgtggcctgggcattagaattttctcgccccctccaggtgatcctgatgtg-agccaagtttgagaacccctgCACTAGAGAAACGTCCTTGGGTCTCCTTCTGTTTCCCACCTTTTGCTGCCAGAATTCGAGTCCTTACTCCCTGCTCGACTTTATGACCTCTTCCCTCCACATACTGTTGCCACATTCC-TTAATAATGAATTTTTATG-- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112729782 236 + 159171411 ccaaagtcctgatttaattgttctagcatgtggccttggtattagagttttctca-cctctccaggtgatgctgatgtg-agccaagtttgagaacccctACACTAAAGAAACTTCCGTGGATGCGTTTCTCTTCCCCACCTTTTGCTGCCAGAATTTGAGTCCTTACTCCCTGCTTGGCTTTATGACCCCTTCCTTCAACACACTGTTGCTACATTCC-TGTATAATGAATTTTTATA-- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39295609 228 - 61074082 caaaaaccactatttaattgacctataatgcagcctggccattagaatctt-taaatctgccctggagatcctgaaatgcagccaagtttgagaacATCTGCTCTAAAGAAACTTTCTTGGACCTCTTTCTCTT-ACCATATTTTCCTAT---------AGTCCTTTATCCCTTCTCAACTTTATAATCTCTGCCC-CAACATACAATTGCTATATTCC-TCAATAATAAATTTTTATAAG i canFam3.chr9 C 0 C 0 e mm10.chr11 99474587 265 + 122082543 I a score=1109620.000000 s hg38.chr17_JH159146v1_alt 68641 298 + 278131 TTTAGTTCCCGATTT-ACACATCATCAGCAGGGTAGGTGTGTAAAAATAATAGTGAAGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGATTGGATT-AACA-GTATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGCAAATATGTTAACATAAATCCTAAATTCCAAAGTGATACATTATACTTCTCCGGATTAGCCATCGGTTTGTTTAGTTGGATTTTGGGTTATAGAATGATAATTGCTATTTATTCAAAGTGTTTCTGGAATGAAAACAATAGAACTTATTGCCA s panTro4.chr17 66188532 298 - 82630442 TTTAGTTCCCGATTT-ACACATCATCAGCGGGGTAGGTGTGTAAAAATAATAGTGATGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGATTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGCAAATATGTTAACATAAATCCTAAATTCCAAAGTAATACATTATACTTCTCCGGATTAGCCATCGGTTTGTTTAGTTGGATTTTGGGTTATAGAATGATAATTGCTGTTTATTCAAAGTGTTTCTGGAATGAAAACAATAGAACTTATTGCCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24718407 302 - 73212453 TTTAGTTCCCGATTT-ACACATCAACAGCAGGGTAGGTGTGTAAAAATAATAGTGAAGACATGA--GTCTA-TAAAGGTGTACA--------TTTGATTGGATT-AACA-ATATTAGATGAATCTATCTATCCATCCACTCCACCATTTTATGACACTGTGGGCAAAGATGTTAACATGAATCCTAAATTCCAAAGTAATACATTATACTTCTCTGGATTAGCCATCGATTTGTTTGGTTGGATTTTGGGTTGTGGAATGATAATTGCTATTTATTCAAAGTGTTTCTGGAATGAAAACAATAGAACTTATTGCCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47938682 298 - 81552678 TTTAGTTCCCGATTT-ACAGATCATCAGCAGGGTAGGTGTGTAAAAATAACAGTGAAGACATGA--GTCTA-TAAAGGCGTGCA--------TTTGATTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGCAAATATGCTAACATAAATCCTAAATTCCAAAGTAATACATTATACTTCTCCGGATTAGCCATCGATTTGTTTGGTTGGATTTTGGGTTGTAGAATGATAATTGCTATTAATTCAAAGTGTTTCTGGAATGAAAACAATAGAACTTATTGCCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53049887 298 + 80904711 TTTAGTTCCCGATTT-ACACATCAGCAGCAGGGTAGGTGTGTAAAAATAATGGTGAAGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGATTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGTAAATATGCTAATATAAATCCTAAATTCCAAAGTAATACATTATACCTCTCTGGATTAGTCATCAATTTGTTTAGTTGGATTTTGGGTTATAGAACAATAATTGCTATATATTCAAAGTGTTTCTGGAATGAAAACAATAGAACGTATTGCCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52572768 298 + 80997621 TTTAGTTCCCGATTT-ACACATCAGCAGCAGGGTAGGTGTGTAAAAATAATGGTGAAGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGATTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGTAAATATGCTAATATAAATCCTAAATTCCAAAGTAATACATTATACCTCTCTGGATTAGTCATCGATTTGTTTAGTTGGATTTTGGGTTATAGAACAATAATTGCTATATATTCAAAGTGTTTCTGGAATGAAAACAATAGAACGTATTGCCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47617834 298 + 74645514 TTTAGTTCCCGATTT-ACACATCAGCAGCAGGGTAGGTGTGTAAAAATAATGGTGAAGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGATTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATAACACTATGGGTAAATATGCTAACATAAATCCTAAATTCCAAAGTAATACATTATACCTCTCTGGATTAGTCATCGATTTGTTTAGTTGGATTTTGGGTTATAGAACAATAATTGCTATATATTCAAAGTGTTTCTGGAATGAAAACAATAGAACGTATTGCCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9885942 298 - 75148670 TTTAGTTCCCGATTT-ACACATCAGCAGCAGGGTAGGTGTGTAAAAATAATGGTGAAGACATGA--GTCTA-TAAAGGTGTGCA--------TTTGACTGGATT-AACA-ATATTAGATGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTGGGCAAATATGCTAACATAAATCCTAAATTCCAAAGTAATACATTATACTTCTCTGGATTAGTCATCGATTTGTTTAGTTGGATTTTGGGTTATAGAACAATAATTGCTATTTATTCAAAGTGTTTCTAGAATGAAAACAATAGAACGTATTGCCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112730018 297 + 159171411 TTTAGTTCTCAGTTT-ATATATCATCAGCAGGGTAGGTGTGTACAAATAATAGTGAAGAAATGA--GTCTA-TGAAGGGGTGCA--------TTTGATGGGATTAAACA-ATATCAGGGGGATCTATCT----ATCCACTCCACCATTTTATGACACTGTAGGCAAATATATTAACATAAATACTAAATTCCAAAGTAATACGTTAT-TTTCTCTGGATTAGCCACCTA-TCGTTTAGTCGGATTTTGGGTTATAGAATGATAATTGCTATTTATTCAAAGCATTTCTGGAATGAAAACAACAGAATTTGTTGCCA i calJac3.chr5 C 0 I 122 s mm10.chr11 99474852 260 + 122082543 TTTAGTTGCCAGTTTCGTACATCATCGACAGG--------GTAAAAATAATATGGGAGG----------TA-TATAGGTGTGTGGTTCTTTTTTTGATTGGGTA------ATATCAAATGGATCTATTT--------ACTCAACCATCTTATAATGCTTC-------TAGGTTAATATAAATACTAAATTTCAAAATAATCCTTCCTGCATCTCTGGATTAGACACCTGTTTGTTCAG---------------CATCACAATAACTGC-ATTTATTCCAAGTGTGTCTGGAATGAAAGCAGTAGAGTTTATTACCT i mm10.chr11 I 265 C 0 s canFam3.chr9 39295837 296 - 61074082 TTTAGTTCCCAATTTTACACATCATTAACAGGGTAGGTGTCAAAAAACATTAATGGAAAAATAAACATTTACTAAAGGCATGCA--------TTTGATTGGATG-AACACATATTAAGGGGATCT--------ATCCACTCAACCATGTTATGGTACTATTGGACAATATGTTGCCATAAATATTAAATTCCAAAGTAATATTTTACATTTCTCTGGGTTAGCCAACTATGTGTTTAGTTTGGTCTTAGGTAATGGA---ATAGGTGCCATTTACTTAGAGTGTTTCTGGAATGAAAACAGTGTAACTCATTACCA i canFam3.chr9 C 0 C 0 a score=73251.000000 s hg38.chr17_JH159146v1_alt 68939 20 + 278131 CCTCCTTTATGTGGGTTGGG s panTro4.chr17 66188830 20 - 82630442 CCTCCTTTATGTGGGTTGGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24718709 20 - 73212453 CCTCCTTTATGTGGGTTGGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47938980 20 - 81552678 CCTCCTTCATGTGGGTTGGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050185 19 + 80904711 -CTCCTTTATGTGGGTTGGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573066 19 + 80997621 -CTCCTTTATGTGGGTTGGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618132 19 + 74645514 -CTCCTTTATGTGGGTTGGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9886240 20 - 75148670 CCTCCTTTATGTGGGTTGGG i chlSab2.chr16 C 0 C 0 s mm10.chr11 99475112 20 + 122082543 CCTTCTTCATGTGGCTTGGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39296133 20 - 61074082 AGTCCTTTATGTGGTTTGGG i canFam3.chr9 C 0 C 0 e calJac3.chr5 112730315 122 + 159171411 I a score=659376.000000 s hg38.chr17_JH159146v1_alt 68959 174 + 278131 TGTATGTTGGTCAAATTC-----AAATACAAACAAAATCTTCTTTGGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAATGGGCATTTTGAAA-CATTTTTACGCTGATTTAAGTGTGGGG-GA-AGATTATTCTGTGTTACCTAGAGCCCAAAATCATGCAATTGTCTCTT s panTro4.chr17 66188850 174 - 82630442 TGTATGTTGGTCAAATTC-----AAATACAAACAAAATCTTCTTTGGTTGGTAATTCACCTGAATGTATAGGCATTAATTGGTTTGTAATGGGCATTTTGAAA-CATTTTTATGCTGATTTAAGTGTGGGG-GG-AGATTATTCTGTGTTACCTAGAGCCCCAAATCATGCAATTGTCTCTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24718729 174 - 73212453 TGTATGTTGGTCAAATTC-----AAATACAAACAAAAATTTCTTTGGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAACGGGCATTTTGAAA-CATTTTTACGCTGATTTAAGTGTGGGG-AA-AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47939000 173 - 81552678 TGTATGTTGGTCAAATTC-----AAATACAAACAAAAATTTCTTCAGTTGGTAATTCGCCTAAATGCATAGGCATTAATTGGTTTGTAACGGGCATTTTGAAA-CATTTTTACGCTGATTTAAGTGTGGGG-G--AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050204 174 + 80904711 TGTGTGTTGGACAAATTC-----AAATACAAACAAAAATTTCTTTGGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAATGGGCATTTTGAAA-CATTTTTACGCTGATTTAAGTGTGGGG-GA-AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573085 174 + 80997621 TGTGTGTTGGACAAATTC-----AAATACAAACAAAAATTTCTTTGGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAATGGGCATTTTGAAA-CATTTTTACGCTGATTTAAGTGTGGGG-GA-AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618151 174 + 74645514 TGTGTGTTGGACAAattc-----aaatacaaacaaaaatttctttgGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAATGggcattttgaaa-catttttacgCTGATTTAAGTGTGGGG-GA-AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9886260 174 - 75148670 TGTGTGTTAGTCAAATTC-----AAATACAAACAAAAATTTCTTTGGTTGGTAATTCACCTGAATGCATAGGCATTAATTGGTTTGTAATGGGCATTTTGAAA-CATTTTTATGCCGATTTAAGTGTGGGG-GA-AGATTATTCTGTGTTACCTAGAGCCAAAAATCATGCAATTGTCTCTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112730437 175 + 159171411 TGTAT-TTGTTCAAATACAAACAAAATGCAAACAAAAATGTATTTTCTTGGAGACTCACCTGAACACATAAGCATTGGTTGATTTGTAACAGGCATTTTGAAA-AGTTTTTACACTGATTTAAGTGTGGGG-GG-AG---ATTCTGTGTTACCTAGAGCCAAAAATCATGCAGTTGTTTCTT i calJac3.chr5 I 122 C 0 s mm10.chr11 99475132 176 + 122082543 TGTGTGTTTGTCCAAACC-----ACATGTAAACAGAAACTACTCCAGCTGACGGCTTGCCTAGATACACAAGAATTAATCGATTTGTAATGGGTATTTTGAAAGAAACTTTGGACTGATTTAAATTCGGGATAA-AGTTTAGTCTAAGGAACCTGGAACCCAAACTCATGCAATTGTCTCTC i mm10.chr11 C 0 C 0 s canFam3.chr9 39296153 165 - 61074082 TGTGTATTGGTCAAAACC-----AAATACAAATGAAAACTTCTGTGGTTAGTAACTCATCTAAACATGCAGGCACTAATCAATTTGTAATGGGTATTTTGAAA-TATTTTTGGGCTGATTTAGATACAGAG-GAGAAGTTATTCTATGTTGCCTAG----------CACACAATTGTCTTTT i canFam3.chr9 C 0 I 244 a score=221788.000000 s hg38.chr17_JH159146v1_alt 69133 55 + 278131 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAACAGAG s panTro4.chr17 66189024 55 - 82630442 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAACAGAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24718903 55 - 73212453 TATTCAGGCAAATGATTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAACAGAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47939173 55 - 81552678 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAACAGAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050378 55 + 80904711 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAACAGAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573259 55 + 80997621 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCGTAGTGAAACAGAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618325 55 + 74645514 TATTCAGGCAAAtggtttcatttctctcttctttcctctccttagTGAAACAGAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9886434 55 - 75148670 TATTCAGGCAAATGGTTTCATTTCTCTCTTCTTTCCTCTCCTTAGTGAAATAGAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112730612 55 + 159171411 TATTCAGGCAAATGGTTTTGTTTCTCTTTTTTTCTCTCTCCTTAGTGAAATAGAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99475308 48 + 122082543 TATTTAG----ATGGTTTAATTTTTCTCTACTTGTCTCT---TAGTGGAAGACAG i mm10.chr11 C 0 C 0 s canFam3.chr9 39296562 53 - 61074082 TATTCAGGCAAATGGTTTCATTTTCC--TACTTGTCACTACTTGGTGAAATAGAG i canFam3.chr9 I 244 I 329 a score=12780.000000 s hg38.chr17_JH159146v1_alt 69188 4 + 278131 GCAA--- s panTro4.chr17 66189079 4 - 82630442 GCAA--- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24718958 4 - 73212453 GCAA--- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47939228 4 - 81552678 GCAA--- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050433 4 + 80904711 GCAA--- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573314 4 + 80997621 GCAA--- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618380 4 + 74645514 GCAA--- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9886489 4 - 75148670 GCAA--- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112730667 4 + 159171411 GCAA--- i calJac3.chr5 C 0 C 0 s mm10.chr11 99475356 7 + 122082543 GCAATTC i mm10.chr11 C 0 C 0 e canFam3.chr9 39296615 329 - 61074082 I a score=1136214.000000 s hg38.chr17_JH159146v1_alt 69192 309 + 278131 TTTATTGATAGGGTGATCAGCCACCCCAGTTTGCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGCGAAAATTAATAAGACTTTAAAGATATTTTAGGTCCTTGCATGAAAAATTATTCATATGTTATGATTTAC-A-TTACCAAATCATATA-TAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATTT-GGTATTACAACTTTCTTTTCAGCTTGTCATATTATTTTTAGATATTCCTCAAAATATTTTTCTAGCAGTATTAAAAAATTCACCT s panTro4.chr17 66189083 309 - 82630442 TTTATTGATAGGGTGATCAGCCACCCCAGTTTGCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGCGAAAATTAATAAGACTTTAAAGATATTTTAGGTCCTTGCATGAAAAATTATTCCTATGTTATGATTTAC-A-TTACCAAATCATATA-TAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATTT-GGTATTACAACTTTCTTTTCAGCTTGTCATATTATTTTTAGATTTTCCTCAAAAGATTTTTCTAGCAGTATTAAAAAATTCACCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24718962 309 - 73212453 TTTATTGATAGGGTGATCAGCCACCCCAGTTTTCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGTGAAAATTAATAAGGCATTACAGATATTTTAGGTCCTTGCATGAAAAATTATTCATATGTTATGATTTAC-A-TTACCAAATCATATA-TAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTAGATCT-GGTATTATAACTTTCTTTTCAGCTTGTCATATTATTTTTAGATATTCCTCAAAAGATTTTTCTAGCAGTATTAAAAAATTCACCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47939232 308 - 81552678 TTTATTGATAGGGTGATCAGCCACCCC-GTTTGCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTTACCTTAATTGATACAGTGAAAATTAATAAGATGTTAAAGATATTTTAGGTCCTTGTATGAAAAATTATTCATATGTTATGATTTAC-A-TTACCAAATCATATA-TAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATCT-GGTATTATAACTTTCTTTTCAGCTTGTCATATTATTTTTAGATATTCCTCAAAAGATTTTTCTAGCAGTATTAAAAAATTCACCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050437 308 + 80904711 TTTATTGATAGGATGATTAGCCATCCCAGTTTGCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGTGAAAATTAATAAGACTTTAAAGATATTTTAGGTCCTTGCATGAAAAATTATTC--ATGTTATGATTTAC-A-TTACCAAATCATATATTAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATCT-GGTATTATAACTTTCTTTTCAGGTTGTCATATTATTTTTAGATATTCCTCAAAAGATTTTTCCAGCAGAATTAAAAAATTCACCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573318 308 + 80997621 TTTATTGATAGGATGATTAGCCATCCCAGTTTGCCTGGGACTAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGTGAAAATTAATAAGACTTTAAAGATATTTTAGGTCCTTGCATGAAAAATTATTC--ATGTTATGATTTAC-A-TTACCAAATCATATATTAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATCT-GGTATTATAACTTTCTTTTCAGGTTGTCATATTATTTTTAGATATTCCTCAAAAGATTTTTCCAGCAGAATTAAAAAATTCACCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618384 307 + 74645514 TTTATTGATAGGATGATTAGCCatcccagtttgcctgggactAATGAGT-TT-CTGGGCACACTGGGATGAATTGGTCACCTTAATTGATACAGTGAAAATTAATAAgactttaaagatattttaggtCCTTGCATGAAAAATTATTC--ATGTTATGATTTAC-A-TTACCAAATCATATA-TAAACTATGATTGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATCT-GGTATTATAACTTTCTTTTCAGGTTGtcatattatttttagatattccTCAAAAGATTTTTCCAGCAGTATTAAAAAATTCACCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9886493 305 - 75148670 TTTATTGAtagggtgattagccattccagtttgcctgggactaatgagt-tt-ctgggcacactgggaTGAATTGGTCACCTTAATCGATACAGTGAAAATTAATAAGATTTTAAAGATATTTTAGGTCCTTGCATGAAAAGTTG-TC--ATGTCATGATTTAC-A-TCACCAAATCATATA-TAAAATATGA-TGTAAATGGAAGG-TTTGTGATTGTTTTCTGGATCT-GGTATTATAACTTTCTTTTCAGCTTGTCATGCCATTTTTAGATATTCCTCAAAAGATTTTTCCAGCAGTATTAAAAAATTCACCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112730671 310 + 159171411 TTTGTTGGTAGGGTGATCATCCACCCCAGTTTTCCTGGGACTAATGAGT-TT-CTAGGCACACTGGGATGAGTTAGTCACCCTAACTGATACAGTGAAAATTAATAAGACTTGAAGGACATTTTAGGTCCTTGGATGAAAAATTATTCATATATTATGATGTAC-A-TTACCAAATCATACA-TAAACTATGATTGTAAATGGAAGACTTTGTGATTATTTTCTGGATCT-GGTATTATAACTGTCTTTTCAGCTTGTCATATTATTTTTAGATATTCCTCAAAAGATTTTTCTAGCAATATGCAAAAATTTACCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99475363 273 + 122082543 TTTACTGAT-GGGTGGCTATCTGTCCTA-TTTGCTTGGGATTGGGGAGTCTT-CTGGGTAAACTGGGATACACTAGCTACTTTCACTGATGGTGTTAAAATGAATTAG-----------ATTTTAGGTTGCTATGTGAAG---------------ATTATTTAC-AGTTCTCAAATCATGTA-TGAATTGTCATTGT------AAGA-TTAACAATTATTTTCTGATTTTGGGTTTTGTAAGTTTTACTCTGCCTTGGCATCTGCCTTTC-----TTCCAGGAACTCTTCTCCTGTTggcgttggggactgaaccc i mm10.chr11 C 0 I 593 s canFam3.chr9 39296944 305 - 61074082 TTTATTAAtagggtgaccaactacttcagtttgcctgggactgaggggt-ttcctgggcacactggga---attGGTTACCTTAATTGATATGGTGAAAATTAATAAGACTTTAAGGATATTTTAGCCCCTTGAATGAAAAATTATTCATATGTTATGATTTCCTA-TTACTAAATCATATA-TAAATTATGATGGTAAGTG-AAGA-CTAGTGATTATTTTCTGGGATT-AGTATTATAACTTTCCCTCCAGCTTATCACTTTTTTTTTA-ATATACTTCAAAAAATTTTCCTAGCCATGCTC-AAACTTCACCT i canFam3.chr9 I 329 C 0 a score=293959.000000 s hg38.chr17_JH159146v1_alt 69501 89 + 278131 TGAGAAAAATA-GCATATTTTATGCACATTTTCTAGATTTCAGGAAACAG------ATAATGTCCAAAACAGCAGAATTAGTTGGTGCTAAAATAG s panTro4.chr17 66189392 85 - 82630442 TGAGAAAAATA-GCATATTTTATGCAC----TCTAGATTTCAGGAAACAG------ATAATGTCCAAAACAGCAGAATTAGTTGGTGCTAAAATAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24719271 90 - 73212453 TGAGAAAAATATGTATATTTTATGCACATTTTCTAGATTTCAGGAAAGAG------ATAATGTCCAAAACAGCAGAATGAGTTGGTGCTAAAGTAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47939540 90 - 81552678 TGAGAAAAATATGTATATTTTATGCACATTTTCTAGATTTCAGGAAAGAG------ATAATGTCCAAAACAGCAGAATGAGTTGGTGCTAAAATAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050745 96 + 80904711 TGAGAAAAATATGTATATTTTATGCATATTTTCTAGATTTCAGGAAAGAGATAATAATAATGTCCAAAACAGCAGGATGAGTTGGTGCTAAAACAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573626 96 + 80997621 TGAGAAAAATATGTATATTTTATGCATATTTTCTAGATTTCAGGAAAGAGATAATAATAATGTCCAAAACAGCAGGATGAGTTGGTGCTAAAACAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618691 93 + 74645514 TGAGAAAACTATGTCTATTTTATGCACATTTTCTAGATTTCAGGAAAGAG---ATAATAATGTCCAAAACAGCAAGATGAGTTGGTgctaaaacag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9886798 93 - 75148670 TGAGAAAAATATGTATATTTTATGCACATTTTCTAGATTTCAGGAAAGAG---ATAATAATGTCCAAAACAGCAGGATGAGTTGGTGCTAAAATAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112730981 93 + 159171411 TGAGAAAAATATGTATATTTTATGCACATTTTCTAGATTTCAGGAAAGAG---ATAATAATGTCTAAAAGAGCAGAATGAGTTGGTGCTAAAATAG i calJac3.chr5 C 0 I 313 s canFam3.chr9 39297249 81 - 61074082 TGAGAA---------TATTTAATGCATAATTTCTAGATTTTAAGAGAAAG------GTAATGTCTAAAGTTGCAGAATGAATTGGTGCTAAAGTGG i canFam3.chr9 C 0 C 0 e mm10.chr11 99475636 593 + 122082543 I a score=-1040.000000 s hg38.chr17_JH159146v1_alt 69590 5 + 278131 AGAAA-- s panTro4.chr17 66189477 5 - 82630442 AGAAA-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24719361 5 - 73212453 AGAAA-- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47939630 4 - 81552678 AG-AA-- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050841 4 + 80904711 AG-AA-- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573722 4 + 80997621 AG-AA-- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618784 4 + 74645514 ag-aa-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9886891 4 - 75148670 AG-GA-- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112731387 5 + 159171411 AGGAA-- i calJac3.chr5 I 313 C 0 s canFam3.chr9 39297330 5 - 61074082 --Aaaaa i canFam3.chr9 C 0 I 219 e mm10.chr11 99475636 593 + 122082543 I a score=288953.000000 s hg38.chr17_JH159146v1_alt 69595 84 + 278131 AAAAATC--ATTTTTAGATCTGCTTGGAGACTATAATA-ACTAGTAACATAAAGAAGTTCTCTTAGTAAAATGAAATAGAAAAAGAG s panTro4.chr17 66189482 84 - 82630442 AAAAATC--ATTTTTAGATCTGCTTGGAGACTATAATA-TCTAGTAACATAAAGAAGTTCTCTTAGTAAAATGAAATAGAAAAAGAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24719366 84 - 73212453 AAAAATC--ATTTTTAGATCTGCTTGGAGACTACAATA-TCTAGTAACGTAAAGAAGTTCTCCTAGTAAAATGAAATAGAAAAAGAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47939634 84 - 81552678 AAAAATC--ATTTTTAGATCTGCTTGGAGACTACAATA-TCTAGTAACATAAAGAAGTTCTTTTAGTAAAACAAAAGAGAAAAAGAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050845 84 + 80904711 AAAAATC--ATTTTTAGATCTGCTTGGAGAATACAATA-CCTAGCAACATAAAGAAGTTCTTTTAGTAAAATGAAGTAGAAAAAGAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573726 84 + 80997621 AAAAATC--ATTTTTAGATCTGCTTGGAGAATACAATA-CCTAGCAACATAAAGAAGTTCTTTTAGTAAAATGAAGTAGAAAAAGAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618788 84 + 74645514 aaaaatc--atttttagatcTGCTTGGAGAATACAATA-CCTAGCAACATAAAGAAGTTCTTTTAgtaaaatgaagtagaaaaagaG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9886895 84 - 75148670 AAAAATC--ATTTTAAGATCTGCTTGGAGAATACAATA-CCTAGTAACATAAAGAAGTTCTTTTAGTAAAATGAAATAGAAAAAGAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112731392 84 + 159171411 AAAAATC--ATTTTTAGATCCGCTTAGAGACTACAATA-CCTAGTAAGATAAAGTAGTTCTCTTAGTCAATTGAAATAGAAAAAGAG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39297554 87 - 61074082 AAAAATTTAATTTTTAAACCTACCTTGAGACTCTAGTACCCTATTAACATAAGGAAGCTCTTGTAGTAAGATGAAATAGAAAAAGAG i canFam3.chr9 I 219 I 7737 e mm10.chr11 99475636 593 + 122082543 I a score=112750.000000 s hg38.chr17_JH159146v1_alt 69679 36 + 278131 AACCTAATAAAGTCTAATATGAATCCATTCTTGACC s panTro4.chr17 66189566 36 - 82630442 AAACTAATGAAGTCTAATATGAATCCATTCTTGACC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24719450 36 - 73212453 AACCTAATAAAGTCTTATATGAATCCATTCTTGACT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47939718 36 - 81552678 AGCCTAATGAAGTCTAAGATGAATCCATTCTTGACC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050929 36 + 80904711 AACCGAATGAAGTCTAATGTGAATCCATTCTTGACC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573810 36 + 80997621 AACCGAATGAAGTCTAATGTGAATCCATTCTTGACC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618872 36 + 74645514 AACCGAATGAAGTCTAATATGAATCCATTCTTGACC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9886979 36 - 75148670 AACCTAATGAAGTCTAATATGAATCCATTCTTGACC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112731476 36 + 159171411 AACGTACTGAAAACTAATATGAATCCATTATTGACC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39305378 33 - 61074082 ---AAAAGAAAATCTAATATGGATCCACTCTTGCTC i canFam3.chr9 I 7737 C 0 e mm10.chr11 99475636 593 + 122082543 I a score=26856.000000 s hg38.chr17_JH159146v1_alt 69715 8 + 278131 CAAATAAC s panTro4.chr17 66189602 8 - 82630442 CAAATAAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24719486 8 - 73212453 CAAATAAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47939754 8 - 81552678 CAAATAAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050965 8 + 80904711 CAAATAAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573846 8 + 80997621 CAAATAAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618908 8 + 74645514 CAAATAAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9887015 8 - 75148670 CAAATAAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112731512 8 + 159171411 CAAATAAC i calJac3.chr5 C 0 C 0 e canFam3.chr9 39305411 0 - 61074082 C e mm10.chr11 99475636 593 + 122082543 I a score=623165.000000 s hg38.chr17_JH159146v1_alt 69723 299 + 278131 AACAAAAGTCACCATATACggccaggtgtggtggctgacgcctgtaatcccagcactttgggaggcccaggtgggtggatcacctgaagtcaggagtgcgagaccagcctgaccaacatggtgaaacccggtctctactaaaaaatacaaaaattagatgcgcacagtggtgggcgcctgtaatcccacctacttgggaggctgaggcagtagaattgcttcagcccgaaaggcggaggttgcagtgaactgagatggcaccattgcactccagcttgggtgatagagcaagactccgt s panTro4.chr17 66189610 293 - 82630442 AACAAAAGTCACCATATACGGCCA------GTATATGacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaagtcaggagtgcgagaccagcctgaccaacatggtgaaacccggtctctactaaaaaatacaaaaattagatgggcatagtggtgggcgcctgtaatcccacctacttcggaggctgaggcagtagaatcgcttcagcccgaaaggcggaggttgcagtgaactgagatggcgccattgcactccagctggggcgatagagcaagactccgt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24719494 299 - 73212453 ATCAAAAGTCACCATATACggccaggtgcggtggctgacgcctgtaatcccagcactttgggaggccgagatgggtggatcacctgaagtcaggagtgtgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaaatacaaaaattggataggcacagtggtgggcacctgtaatcccacctacttgggaggctgaggcagtagaattgcttgagcccggaaggcggaggttgcagtgaactgagatggcgccattgcactccagcttgggtgacagagcaagactccgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47939762 298 - 81552678 ATCAAAAGTCA-CATATACggccaggtgcggtggctgacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaagtcaggagtgtgagaccagcctgaccaacatggtgaaaccccgtctttactaaaaaatacaaaaattagatgggcacagtggtgggcgcctgtaatcccacctacttgggaggctgaggccatagaatcgcttgagcccagaaggcagaggttgcagtgaactgagatggcgccattgcactccagcttgggcgatagagcaagactccgt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53050973 281 + 80904711 ATCAAAAGTCACCACATACggccgggcgtggtggctaatg-ctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcaa--------ccaccaacatggtgaaagcccatctctacta--------aaaaattagctgggcacggtggcgggcacctataatcccacctacttgggaggctgaggcagtagaatggcttgagcccggaaggcagaggttgcagtgagccgagatcaccccattgcactccagcttgggtgacagag-aagactccat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52573854 281 + 80997621 ATCAAAAGTCACCACATACggccgggcgtggtggctaatg-ctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcaa--------ccaccaacatggtgaaagcccatctctacta--------aaaaattagctgggcacggtggcgggcacctataatcccacctacttgggaggctgaggcagtagaatggcttgagcccggaaggcagaggttgcagtgagccgagatcaccccattgcactccagcttgggcgacagag-aagactccat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47618916 289 + 74645514 ATCAAAAGTCACCacatacggccgggcgcggtggctaatg-ctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaagcccatctctacta--------aaaaattagctgggcacggtggcgggcacctataatcccacctacttgggaggctgaggcagtagaatggcttgagcccggaaggcagaggttgcagtgagccgagatcaccccattgcactccagcttgggcgacagag-aagactccat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9887023 297 - 75148670 ATTAGAAGTCACCACATATggctgggtacggtggctaatg-ctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtctctactaaaaaatacaaaaattaaccaggcacggtggcgggcacctataatcccatctccttgggaggctgaggcagtagaatggcttgagcccggaaggtagaggttgcagtgagccgatatcaccccattgcactccagcttgggcgacagag-aagactccat i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39305411 0 - 61074082 C e mm10.chr11 99475636 593 + 122082543 I e calJac3.chr5 112731520 0 + 159171411 C a score=18916.000000 s hg38.chr17_JH159146v1_alt 70022 11 + 278131 ctc----------------------------aaaaaaaa s panTro4.chr17 66189903 28 - 82630442 ctc-----------aaaaaaaaaaaaaaaaaaaaaaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24719793 22 - 73212453 ctc-----------------aaaaaaaaaaaaaaaaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47940060 24 - 81552678 ctc---------------aaaaaaaaaaaaaaaaaaaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53051254 34 + 80904711 c-----aaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52574135 39 + 80997621 ctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47619205 30 + 74645514 ttc---------aaaaaaaaaaaaaaaaaaaaaaaaaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9887320 18 - 75148670 ttc---------------------aaaaaaaaaaaaaaa i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39305411 13 - 61074082 --------------------------CCCAAAACATCAA i canFam3.chr9 C 0 C 0 e mm10.chr11 99475636 593 + 122082543 I e calJac3.chr5 112731520 0 + 159171411 C a score=11511.000000 s hg38.chr17_JH159146v1_alt 70033 3 + 278131 aaG s panTro4.chr17 66189931 3 - 82630442 aaG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24719815 3 - 73212453 aaG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47940084 3 - 81552678 aaG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53051288 3 + 80904711 aaG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52574174 3 + 80997621 aaG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47619235 3 + 74645514 aag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9887338 3 - 75148670 aaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112731520 3 + 159171411 AAG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39305424 3 - 61074082 AAG i canFam3.chr9 C 0 C 0 e mm10.chr11 99475636 593 + 122082543 I a score=1058087.000000 s hg38.chr17_JH159146v1_alt 70036 323 + 278131 TCACCACATACAAATGCTGCACAAAGAAAACTTA-GTGAAGATGTTTGTGTACTGGTTA-TTTTTGAGTCTCTT----------TGAAATAGTAAAGATAAATTATTAATTTTACATCAGAGAGTTAATGTA-TTTAGTTAAACCAATAGTACACTT-TTGCTAG-GGTGTGGTTATTCTG----tttttattttttttcttttttctttt--------tcttttct---------------------------tttttttttttt-ttGGCATTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGGGAAGATGAATCCAATTTTAACAGATGCTCAGTTCAGGAAATATCAAAAGCTACCCTTTACAAAGGAGTAT s panTro4.chr17 66189934 317 - 82630442 TCACCACATACAAATGCTGCACAAAGAAAACTTA-GTGAAGATGTTTGTGTACTGGTTA-TTTTTGAGTCTCTT----------TGAAATAGTAAAGATAAATTATTAATTTTACATCAGAGAGTTAATGTA-TTTAGTTAAACCAATAGTACACTT-TTGCTAG-GGTGTGGTTATTCTG----tttttattttttttcttttttctttt--------tcttttc---------------------------------ttttctt-ttGGCATTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCAGTTCAGGAAATATCAAAAGCTACCCTTTACAAAGGAGTAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24719818 314 - 73212453 TCACCACATACAAATGCTGCACAAAGAAAACTTA-GTGAAGATGTTTGTGTACTGGTTA-TTTTTGAGTCTCTT----------TGAAATAGTAAAGATAAATTATTAATTTTACATCAGAGAGTTGATGTATTTTAGTTAAACCAGTAGTACACTT-TTGCTAG-GGTGTGGTTATTCTG----ttttcatttt-----ttttttctttt--------tcttttc--------------------------------tttttttt-ttGGCATTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCAGTTCAGGAAATATCAAAAGCTACCCTTTACAAAAGAGTAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47940087 323 - 81552678 TCACCACATACAAATGCTGCACAAAGAAAACTTA-GTGAAGATGTTTGTGTACTGGTTA-TTTTTGAGTCTCTT----------TGAAATGGTAAAGATAAATTACTAATTTTACATCAGAGAGTTAATGTATTTTAGTTAAACCAATAGTACACTT-TTGCTAG-GGTGTGGttattctg----tttttattttttttcttttttctttt--------tcttttc----------------------------tttttttttttt-ttGGCATTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCAGTTCAGGAAATTCCAAAAGCTACCCTTTACAAAGGAGTAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53051291 355 + 80904711 TCACCACATACAAATACTGCACAAAGAAAACTTA-GTGTAGATGTTTGTATACTGGTTA-TTTTTGAGTTTCTT----------TGAAATAGTAAAGATAAATTATTAATTTTACATCAGAGAGTTAAAGTATTTTAGTTAAACCAATAGTACACTT-TTGCTGG-GGTGTGGTTATTCTG--Gtttttttttttcttttttctttctttc------ttttttttttGCCTAATTTCAGATCGTTAAGGGGCTGGTTTTCTATTCT-TTGGCGTTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCCATTCAGAAAATATCAAAAGCAACCCTTTAGAAAAGAGTAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52574177 356 + 80997621 TCACCACATACAAATACTGCACAAAGAAAACTTA-GTGAAGATGTTTGTATACTGGTTA-TTTTTGAGTTTCTT----------TGAAATAGTAAAGATAAATTATTAATTTTACATCAGAGAGTTAAAGTATTTTAGTTAAACCAATAGTACACTT-TTGCTGG-GGTGTGGttattctg--ttttttttttttcttttttctttctttc-----tttttttttttGCCTAATTTCAGATCGTTAAGGGGCTGGTTTTCTATTCT-TTGGCGTTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCCATTCAGAAAATATCAAAAGCAACCCTTTAGAAAAGAGTAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47619238 363 + 74645514 tcaccacaTACAAATACTGCACAAAGAAAACTTA-GTGAAGATGTTTGTATACTGGTTA-TTTTTGAGTTTCTT----------TGAAATAGTaaagataaattattaattttacatcAGAGAGTTAAAGTATTTTAGTTAAACCAATAGTACACTT-TTGCTAG-GGTGtggttattctgttttttttttttttcttttttctttcttttttttttttttttttttgcctaatttCAGATCGTTAAGGGGCTGGTTTTCTATTCT-TTGGCATTAAAGA-TCAGAAACATCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCCATTcagaaaatatcaaaagcaacCCTTTAGAAAAGAGTAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9887341 352 - 75148670 TCACCACATACAAATACTACACAAAGAAAACTTA-GTGAAGATGTTTGTATACTGGTTA-TTTTTTAGTTTCTT----------TGAAATAGTAAAGATAAATTATTAATTTCACATCAGAGAGTTAAAATATTTTAGTTAAACCAATAGTACACTT-TTGCTAG-GGTGTGGTTATTCTG---Ctttttttttccttttttctttctttt--------ttttttttGCCTAATTTCAGATCGTTAAGGGGCTGGTTTTCTATTCT-TTGGCATTAAAGA-TCAGAAACACCAATT-GTTGCCTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCCATTCAGAAAATATCAAAAGCAGCCCTTTAGAGAAGAGTAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112731523 326 + 159171411 TTACCACATACAAATACTGCACAAAGAAAACTTA-GTGACAGTGTTCGTGTACTGGTTA-TTTTTGAGTCTCTT----------TGAAAGAGTAATGATAAA-TATTAATTTTACACCGGACAGTTAGTGTATTTTAGTTAAACCAATAGTATACTT-TTGCTAG-GGTGTGGTTCTTCTT--CTTCTTTGTTTTCCTAATTTCAACTCGT--------T--------------------------AGGGGCTGGTTTTCTATTCT-TTGGCATTAAAGA-TCAGAAACACCAATT-GTAGCTTTAAAGAGAAGATGAATCCAATTTTAACAGATGCTCAGTTCAGAAAATATCAAAAGCAACCCTTTACAAAAGGGTAT i calJac3.chr5 C 0 C 0 s mm10.chr11 99476229 343 + 122082543 TCACCATGGATAAATACAGAACAGAGGGAAGGCATTTGGAGAGGTCTATGTATTTGCTG-TCTTTTAGCCTTCTCTGAAAACAGTCAAATTGTAAATATAATCCTAAAAATCTACACCTG--GATTCATGGGATTTAGTTAAATCTATAATTTTTTTATTCCCAGTGATGTGCCCAACCTA----------TTTTCTTTGTTATATATTTT--------TTCAGTCTATATGGTTAAA--------------TGGTTTTCTATTTTGGGGGGATTAGAGG-TCGGAAACATCAATT-GTTGCTTTAAAGGGAAACGAAATCAGCTTTCATCAGATTCTCAGTTTAGAAATCATCAAAAGTAATCCTTTCAAAGAGACTAT i mm10.chr11 I 593 I 636 s canFam3.chr9 39305427 327 - 61074082 TCTCC----ACAAATACTGCACAAAGAAAATTCA-CTGAAAGTATTAGTGTAATGGTTATTTTTTGAGGTTATC----------TTAAAT------GATAAGTTTGCAAATTTACTCCAGATGATTAGTGTA-TTTAGTTAAACCAGTAACACATTT-TTGA-AT-TGTGTGATAATGACA----------------TGATTATCTCGGGT--------TCCTTTT-GCCTAATTTCAGATGTT--AGGGGATGGTTTTCCATTCT-TTGGGGATGAGGAGTCAGAAACACTATTTAAATTCCTTAAAGGGAAGACCAATTCAGTTTTGACAAATGCCGAGTTCAGAAAATATCAAAAGCTATCCTTTCCAAGAAAGTAT i canFam3.chr9 C 0 C 0 a score=313521.000000 s hg38.chr17_JH159146v1_alt 70359 91 + 278131 -TAAACATAGAGACAAAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT s panTro4.chr17 66190251 91 - 82630442 -TAAACATAGAGACAAAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAGTGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24720132 91 - 73212453 -TAAACATGGAGACAAAAAAATATGCAGGGCATTGCCAATGGATCAGATGACAGTGGGACTAA----ATCATACCCATTTTTGGTTTAACAGCTGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47940410 91 - 81552678 -TAAACATAGAGACAAAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53051646 90 + 80904711 -TAAGCATAGAGAC-AAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52574533 90 + 80997621 -TAAGCATAGAGAC-AAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47619601 90 + 74645514 -TAAGCATAGAGAC-AAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9887693 90 - 75148670 -TAAGCATAGAGAC-AAAAAATATGCAGGGCATTGCCAATGTATCAGATGACAATGGGACTAA----ATCACACCCATTTTTGGTTTAACAGCTGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112731849 90 + 159171411 -TAAACATAGAGAC-AAAAACTATGTAGGACATTGCCAATGTATCAGGTGACAATGGGACTAA----ATCACACTCATTTTTGGTTTAACAGCTGT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39305754 93 - 61074082 TAAAACATA-AAAC-AAAAAAAACATGGGACATTGCAAATGTGTTAGATAATAATGGCACTAACTACATCCTAC-CACTTGTAGTTTAACAACAGT i canFam3.chr9 C 0 C 0 e mm10.chr11 99476572 636 + 122082543 I a score=1280170.000000 s hg38.chr17_JH159146v1_alt 70450 345 + 278131 TAAATgagtcaagagacctggatctagatccagctgcaccgatccagtgagtgtctgggtaaatgccttcactgctctgggcctctgttgatttgtctgtaaaatgggagattttgactatcctgtgtctacagtctctt-aaattgttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTT-CCCCCTTCCTTTTCTCCAGCAGTGCTCCTCTGCAGCAACCTCAGAACAGTGGCCCACACTCCTAGAATTTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTTCGTAGTCTCAGTGGTTTATTCACCTGCTACAGCTC s panTro4.chr17 66190342 345 - 82630442 TAAATgagtcaagagacctggatctagatccagctgtaccgatccagtgagtgtctgggtaaatgccttcactgctctgggcctctgttgatttgtctgtaaaatgggagattttgactaccctgtgtctacagtctctt-aaattgttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTT-CCCTCTTCCTTTTCTCCAGCAGTGCTCCTCTGCAGTAACCTCAGAACAGTGGCCCACACTCCTAGAATTTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTTCATAGTCTCAGTGGTTTACTCACCTGCTACAGCTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24720223 345 - 73212453 GAAATgagtcaagagacctggatctagatccagctgcactgatccagtgagtgtctgggtaaatgtcttcactgctctgggcctccgttgatttgtctgtaaaatgggagattttgactatcttgtgtctacagtctctt-aaattgttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTT-CCCCCTTCCTTTTCTCCAGCAGTGCTCCTCTGCAGCAACCTCAGAACAGTGGCCCACACTCCTAGAATTTGAGAAAATGGCATGTTCTTCAGAGGACAGAGGTTCGTAGTCTCAGTGGTTTACTCACCTGCTACAGCTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47940501 345 - 81552678 TAAATgagtcaagatacctggatctagatccagctgcaccgatccagtgagtgtctgggtaaatgccttcactgctctgggcctccgttgatttgtctgtaaaatgggagattttgactatcctgtgtctacagtctctt-aaattgttaatatcctataattccgtg-TGCAGTATTCTGACGATGTTTTAGTGGATATGTGGATTT-CCCACTTCCTTTTCTCCAGCAGTGCTCCTTTGCAGCAACCTCAGAAAAGTGGCCCACACTCCTAGAATTTGAGAAAATGGCATTTTCTTCAGAGGACAGAGGTTCATAGTCTCGGTGGTTTACTAACCTGCTACAGCTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53051736 345 + 80904711 TAAAggagttaagagacctggatctagatccagctgcaccgatccagtgagtgtttgggtaaatgccttcactgctctgggcctccgttgatttgcctgtaaaatgggagattttgactatcctgtgtctacagtctctt-aaatggttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTTCCCCCCTTCCTTTTCTCCAGCAGTGCTCCTTTGCACCAGTCTCAGAACAGGGGCCCACACTCCTA-AATCTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTTTGTAGTCTCAGTGGTTTACTCACCTGCTACAGCTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52574623 345 + 80997621 TAAAggagttaagagacctggatctagatccagctgcaccgatccagtgagtgtttgggtaaatgccttcactgctctgggcctccgttgatttgcctgtaaaatgggagattttgactatcctgtgtctacagtctctt-aaatggttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTTCCCCCCTTCCTTTTCTCCAGCAGTGCTCCTTTGCACCAGTCTCAGAACAGGGGCCCACACTCCTA-AATCTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTTCGTAGTCTCAGTGGTTTACTCACCTGCTACAGCTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47619691 345 + 74645514 TAAAGGAGTCAAGAGACCTGGATCTAGATCCAGCTGCACCAATCCAGTGAGTGTTTGGGTAAATGCCTTCACTGCTCTGGGCCTCTGTTGATttgcctgtaaaatgggagatTTTGACTATCCTGTGTCTACAGTCTCTT-AAATGGTTAATATCCTATAATTCCATG-TGCAGTATTCTGACGATGTCTTAGTGGATTTGTGGATTTCCCCCCTTCCTTTTCTCCAGCAGTGCTCCTTTGCACCAGTCTCAGAACAGGGGCCCACACTCCTA-AATCTGAGAAGATGGCATCTTCTTCAGAGGACAGAGGTTCGTAGTCTCAGTGGTTTACTCACCTGCTACAGCTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9887783 345 - 75148670 TAAAggagtcaagagacctggatctagatccagctgcaccgatccagtgagtgtttgggtaattgccttcactgctctgggcctccgttgatttgcctgtaaaatgggagattttgactatcctgtgcctacagtctctt-aaatggttaatatcctataattccatg-TGCAGTATTCTGACGATGTCTTAGTGGATATGTGGATTTCCCCCCTTCCTTTTCTCCAGCAGTGCTCCTTTGCACCAGTCTCAGAACAGGGGCCCACACTCCTA-AATCTGAGAAAATGGCATCTTCTTCAGAGGACAGAGGTTCGTAGTCTCAGTGGTTTACTCACCTGCTACAGCTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112731939 333 + 159171411 TAAAgaagtc--gagaccggggtctagacgcagctgctccgatccagtgagtgtctggggaaatgctttcactgctctgggcctctgttgatttgtctataaaatgggagatttggactatcctgtgtctttagtctctt-aaattgttaatatcctataattccatT--------TTCTGACGATGTCTTAATTTATATGTGGATTT-CCCCCTTCCTTTTCTCCAGAAGTGCTCCTCTGCACTGGCTTCAGAACAGTGGCCCACATTCCTAGAA--TGAGAAAATGGCATCTTCCTCAGAGGACAGAGGTACGTAGTCTCA-TAGTTTACCCACCTGCTACAGTTC i calJac3.chr5 C 0 C 0 s mm10.chr11 99477208 338 + 122082543 TGGAGGGACCATGAGACACAGGTCTCTGTCCAGCAGCACCTGTCTGGGAAGCAGCC-AGTAAACACCCTCACCTCTCTGGGTATCTGGTTATTTGTTTGTAAAATGGGCA--TGTGCCTATCCAATGTTT---GCCTCTT-AAGCTGCTGATGTCCCAGCATTCCACACTCCCATAGTCTGATGACATATTCACAGACACATGTCCTT--CTTGCTCTTTTTCCCCAGTAGAGCCCCTCTGAAACAGTCATACAACAATGGCTTAGTCCCCTAGAACCTGAGACAACAGCCTGTTCTCGAGGGGACAGAGAT-CATCATCCCAGTAGGTCAGCCACCAGCCATAGATC i mm10.chr11 I 636 C 0 s canFam3.chr9 39305847 340 - 61074082 TAACAgagttgagagagctggatgtag-cctagcaaca---atccagtgagtctttgattaaatgcatttcttattctgggcatcagtttatttgtctgtaaaatgggagagtttgactagtctatgcttgtggtcccttaaaattgtgtatatcctataattccatg-TACAGCATTCTGATGATGCCTTA-CAGATATATGGATTT-CCATCTTCCTTTTCTCCAACATTGCTCCTTTGTACCAGTCTTGGAACAGTGGCTTACGCTGCTATAGTTTGAGAGAAAGGCATCTTCTTGAGAGGACAGAGGTGCAAAGTGTCTGTGCTTCAGCC-CCTACTCCACCTC i canFam3.chr9 C 0 I 1 a score=16317.000000 s hg38.chr17_JH159146v1_alt 70795 5 + 278131 AGCAT s panTro4.chr17 66190687 5 - 82630442 AGCAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24720568 5 - 73212453 AGCAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47940846 5 - 81552678 AGCAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53052081 5 + 80904711 AGCAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52574968 5 + 80997621 AGCAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47620036 5 + 74645514 AGCAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9888128 5 - 75148670 AGCAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112732272 5 + 159171411 AGCCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99477546 5 + 122082543 GCCAT i mm10.chr11 C 0 I 4 e canFam3.chr9 39306187 1 - 61074082 I a score=677105.000000 s hg38.chr17_JH159146v1_alt 70800 243 + 278131 Gtgatgtggttttgctgtgtccccacccaattgtcatcttgaattgcagctcccataattcctatgtgttgtgggagggacctggtgggaggtaattgaatcatga----gggtctttcccgtgtgctggtctcctgatagtgaataagtctcacaagatctgatgttttttttt--------------ttttttttttttttttgagacagagtctcactcttgtcacccaggctggagtgcagtggtgcgatcttggct s panTro4.chr17 66190692 240 - 82630442 Gtgatgtggttttgctgtgtccccacccaactgtcatcttgaattgcagctcccataattcctatgtgttgtgggagggacctggtgggaggtaattgaatcatgggggtgggtctttcccgtgtgctggtctcctgatagtgaataagtctcacaagatctgatg-------gt--------------ttttttttttttttttgagacggagtctcactcttgtcacccaggctggagtgcagtggtgcgatcttggct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24720573 238 - 73212453 Gtgatgtggttttgctgtgtccccacccaattgtcatcttgaattgcagctcccataattcctatgtgttgtgggagggacctggtgggaggtaattgaatcataggggtgggtctttcccatgtgctggtctcctgatagtgaataagtctcacaagatctgatg-----------------------gtttttttttttttttgagacggagtctcactcttgtcacccaggctggagtgcagtggtgcgatcttggct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47940851 261 - 81552678 Gtgatgtggttttgctgtgtccccacccaattgtcatcttgaattgcagctcccataattcctatgtgttgtgggaggaacctggtgggaggtaattgaatcatgggggtgggtctttcccatgtgctattctcctgatagtgaataagtctcacaagatttgatgtttttttttttttgttttttttgttttttttttttatttgagacagagtctcactcttgtcacccaggctggagtgcagtggtgcgatcttggct i nomLeu3.chr19 C 0 M 607 s rheMac3.chr16 53052086 238 + 80904711 Gtgatgtggttttgctgtgtccccacccaattctcatcttgaattgcagctcccataattcctatgtgtcatgggagggacctggcaggaggtaattgaaacacgggggcgggtctttcccatgcgctattctcctgatagtgaataagtctcacaagatctga---------tt--------------ttttttttttttttttgagacggagtctcactcttgttacccaggctggagtatagtggtgcgatcttggct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52574973 237 + 80997621 Gtgatgtggttttgctgtgtccccacccaattctcatcttgaattgcagctcccataattcctatgtgtcatgggagggacctggcgggaggtaattgaaacacgggggcgggtctttcccatgcgctattctcctgatagtgaataagtctcacaagatctga----------t--------------ttttttttttttttttgagacggagtctcactcttgttacccaggctggagtatagtggtgcgatcttggct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47620041 244 + 74645514 GTGatgtggttttgctgtgtccccacccaattctcatcttgaattgcagctcccataattcctatgtgtcatgggagggacccggtaggaggtaattgaaacacaggggcgggtctttcccatgcgctgttctcctgatagtgaataagtctcacaagatttgatt---tttttt--------------ttttttttttttttttgagacggagtctcactcttgttacccaggctggagtgtagtggtgcgatcttggct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9888133 244 - 75148670 Gtgatgtggttttgctgtgtccccacccaattctcatcttgaattgcagatcccataattcctatgtgtcgtgggagggacccggtaggaggtaattgaaacacgggggcgggtctttcccatgcgctgttctcctgatagtgaataagtctcacaagatctgatt---tttttt--------------ttttttttttttttttgagacggagtctcactcttgttacccaggctggagtgtagtggtgcgatcttggct i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112732277 223 + 159171411 Gtgatgtggtttggccatgtccccacccaactctcatcttgaatttcagctcccataattcccatgtgttatgggagggactccgtgggaggtgattgaatcatgagggcaggtctttctcat--gctgttctcctgagag----------ttatgagatctga----------t--------------tttttttttcttttttgagacagagtctcactcttgtcacccaggctggagtgcaatggcgcga--tgggct i calJac3.chr5 C 0 C 0 e canFam3.chr9 39306187 1 - 61074082 I e mm10.chr11 99477551 4 + 122082543 I a score=371422.000000 s hg38.chr17_JH159146v1_alt 71043 157 + 278131 cactgcaacctaagcctcctgggttcaagcaattctcctgtctcagcctcccaggtagctggcattacaagcacccaccaccatgcccagctaatttttcgatttt-agtagagacggggtttcaccatattggccaggctggtctcgaactcctgac s panTro4.chr17 66190932 157 - 82630442 cactgcaacctaagcctcctgggttcaagcaattctcctgtctcagcctcccaagtagctggcattacaagcacccaccaccatgcccaactaatttttctatttt-agtagagagggggtttcaccatattggccaggctggtctcgaactcctgac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24720811 157 - 73212453 cactgcaacctaagcctcctgggttcaagcaattctcctatctcagcctcccaagtagctggcattacaagcacccaccaccatgcccagctaatttttctatttt-agtagagatggggtttcaccatattggccaggctggtctcgaactcctgac i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53052324 157 + 80904711 cactgcaacctaagcctcctgggttcaagcaattcccctgtctcagcctcctgagtagctggcattacaggtgcctgccaccacgcccagctaatttttctatttt-agtagagacgggatttcaccatattggccaagctggtctcgaactcctgac i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52575210 157 + 80997621 cactgcaacctaagcctcctgggttcaagcaattcccctgtctcagcctcctgagtagctgacattacaggtgcctgccaccacgcccagctaatttttctatttt-agtagagacgggatttcaccatattggccaagctggtctcgaactcctgac i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47620285 157 + 74645514 cactgcaacctaagcctcctgggttcaagcaattcccctgtctcagcctcccgagtagctggcattacaggtgcctgccaccacgcccagctaatttttctatttt-agtagagacgggatttcaccatattggccaagctggtctcgaactcctgac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9888377 157 - 75148670 cactgcaacctaagcctcctgggttcaagcaattctcctgtctcagcctcccgagtagctggcattacaggtgcctgccaccacgcccagctaatttttctatttt-agtagagacggggttttaccatattggccaggctggtctcgaactcctgac i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112732500 158 + 159171411 cactgcaacctccgcctcatgggttcaggcaattctcctgtctcagcctccggagtagctggcattacaggcgcccaccaccacgcctaggtaatttttgtattttcagtggagatggggtttgaccatgttggctgggctggtcttgaactcctgac i calJac3.chr5 C 0 C 0 e canFam3.chr9 39306187 1 - 61074082 I e mm10.chr11 99477551 4 + 122082543 I e nomLeu3.chr19 47941112 607 - 81552678 M a score=636009.000000 s hg38.chr17_JH159146v1_alt 71200 210 + 278131 ctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcctggccgagatctgatggttttataaagaggagttcccctgcacaagcactcttgcctgctgccatgtaagacgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccacatgtgagtcaattaa s panTro4.chr17 66191089 210 - 82630442 ctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgtgcccggccgagatctgatggttttataaaggggagttcccctgcacaagcactcttgcctgctgccatgtaagacgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccacatgtgagtcaattaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24720968 209 - 73212453 ctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgtgcccggctgagatctgatggttttataaaggggagttcccctgcacaagcactcttgcctgctgccatgtaagacgtgtcttgcttcccctttgccctccatcatgattgtga-gccttcccagccaggtccacatgagagtcaattaa i ponAbe2.chr17 C 0 I 132 s nomLeu3.chr19 47941721 209 - 81552678 ctcaggtgatccgccca-ctcagcctcccaaagtgctgggattacaggcgtgagccactgtgcctggcTgagatctgatggttttataaaggggagttccccggcacaagcactcttgcctgctgccatgtaagacgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccacatgtgagtcaattaa i nomLeu3.chr19 M 607 C 0 s rheMac3.chr16 53052481 210 + 80904711 ctcaggtgatctgcccacctcggcctctcaaagtgctgggattacaggtgtgaaccaccacgcccagctgagatctgatggttttatagaggggagttctcctgcacaagcactcttgcctgctgccatgtcagatgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccacatgtgagtcaattaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52575367 210 + 80997621 ctcaggtgatctgcccacctcggcctctcaaagtgctgggattacaggtgtgaaccaccacgcccagctgagatctgatggttttatagaggggagttctcctgcacaagcactcttgcctgctgccatgtcagatgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccacatgtgagtcaattaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47620442 210 + 74645514 ctcaggtgatctgcccacctcggcctctcaaagtgctgggattacaggtgtgaaccaccacgcccagctgagatctgatggttttatagaggggagttctcctgcacaagcactcttgcctgctgccatgtcagatgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccACATGTGAGTCAAtgaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9888534 210 - 75148670 ctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccacgtccggcagagatctgatggttttatagaggggagttctcctgcacaagcactcttgcctgctgccatgtcagatgtgtcttgcttcccctttgccctccatcatgattgtgaggcctccccagccatgtccccatgcgagtcaattaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112732658 208 + 159171411 tacaagggatcagcctgcattggcttcccaaagcgctgggattacaggtgtgagccgccactcccagctgagatctgatagttttataaaggggagttcccctgcacaagcactcttgcttgctgccatgtaagac--gttttgcttcccctctgccttccaccatgattatgaggcctccccagccatgtccacatgtgagtcaattaa i calJac3.chr5 C 0 C 0 e canFam3.chr9 39306187 1 - 61074082 I e mm10.chr11 99477551 4 + 122082543 I a score=70499.000000 s hg38.chr17_JH159146v1_alt 71410 30 + 278131 acctcattcctttataaattacccagtctc s panTro4.chr17 66191299 30 - 82630442 acctcattcctttataaattacccagtctc i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47941930 30 - 81552678 accttattcctttataaattacccagtctc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53052691 30 + 80904711 gcctctttcctttataaattacccagtctc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52575577 30 + 80997621 gcctctttcctttataaattacccagtctc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47620652 30 + 74645514 gcctctttcctttataaattacccagtctc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9888744 30 - 75148670 gcctctttcctttataaattacccagtctc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112732866 30 + 159171411 acctctttcttttataaattacccagcctt i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24721177 132 - 73212453 I e canFam3.chr9 39306187 1 - 61074082 I e mm10.chr11 99477551 4 + 122082543 I a score=100201.000000 s hg38.chr17_JH159146v1_alt 71440 42 + 278131 gggtatgtctttata-cccgagcatgag-aacagact-aataTGG s panTro4.chr17 66191329 42 - 82630442 aggtatgtctttata-cccgagcatgag-aacagact-aataTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24721309 45 - 73212453 gggtatgtctttataccccgagcatgagaaacagactaaATATGG i ponAbe2.chr17 I 132 C 0 s nomLeu3.chr19 47941960 42 - 81552678 gggtatgtctttata-cccgagcatgag-aacagact-aataTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53052721 41 + 80904711 gggtatgtctttatt-agc-agcatgag-aacagact-aataTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52575607 41 + 80997621 gggtatgtctttatt-agc-agcatgag-aacagact-aataTGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47620682 41 + 74645514 gggtatgtctttatt-agc-agcgtgag-aacagact-aatatgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9888774 41 - 75148670 gggtatgtctttatt-agc-agcgtgag-aacagact-aataTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112732896 40 + 159171411 gggtatgtctttat--agc-agcgtgag-aacagact-aatacaG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39306187 1 - 61074082 I e mm10.chr11 99477551 4 + 122082543 I a score=28296.000000 s hg38.chr17_JH159146v1_alt 71482 7 + 278131 CATGATA s panTro4.chr17 66191371 7 - 82630442 CATGATA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24721354 7 - 73212453 CATGATA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47942002 7 - 81552678 CATGATA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53052762 7 + 80904711 CATGATA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52575648 7 + 80997621 CATGATA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47620723 7 + 74645514 cATGATA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9888815 7 - 75148670 CATGATA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112732936 7 + 159171411 CATGATA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39306188 7 - 61074082 CATAATA i canFam3.chr9 I 1 C 0 e mm10.chr11 99477551 4 + 122082543 I a score=2757105.000000 s hg38.chr17_JH159146v1_alt 71489 777 + 278131 CTCTGGATCCTAGTATTTGCAATTTGAATTTTGGATGAGTTACTTCCCCTTTTAGAGCCATAGTATCTGTCTGTAATGAGAA--------TTTTTTTCCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCTTTCAGCTTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCCCTTCCCTTCCTACTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCCGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCATGGACGATGTTCTGAGAACCCCTTGTTAGGATGAAACCCTGAGGT---GCTGTCTTGCCT----TATGATATT-AAAAAAAGACACGATGCAGCTAGTGCGGAGTTTTATTGGCTACAAAATAGATGCAAAATGATGAGAATCTGAAGGCTGC--------AGTAGGAAAGTAGAGCTTTACC---CTCATAAACTCGCACTTTGATTAGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGAC-------TGTTACAG-AAAAAAAAAATAAAAGTTTCTGAGTCTGATAATTCCAAGGGTATCTTTTAGAACTCACTCACTGGTGTCTGTGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAACAGGCGGAAACTTTCATTGGTCTCATGCGTGC s panTro4.chr17 66191378 777 - 82630442 CTCTGGATCCTAATATTTGCAATTTGAattttggatgagttacttccccttttagagccttagtatctgtctgtaatgagAA--------TTTTTTTCCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCTTTCAGCTTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTCTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCCCTTCCCTTCCTACTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCCGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCATGGACGATGTTCTGAGAACCCCTTGTTAGGATGAAACCCTGAGGT---GCTGTCTTGCCT----TATGATATT-AAAAAAAGACACGATGCAGCTAGTGTGGAGTTTTATTGGCTACAAAATAGATGCAAAATGATGAGAATCTGAAGGCTGC--------AGTAGGAAAGTAGAGCTTTACC---CTCATAAACTCGCACTTTGATTAGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGAC-------TGTTACAG-AAAAAAAAAATAAAAGTTTCTGAGTCTGATAATTCCAAGGGTATCTTTTAGAACTCACTCACTGGTGTCTGCGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAACAGGCGGAAACTTTCATTGGTCTCATGCGTGC i panTro4.chr17 C 0 I 422 s ponAbe2.chr17 24721361 775 - 73212453 CTCTGGATCCTGATATTTGCAATTTGgattttggatgagttacttccccttttagagccttagtatctgtctgtaatgagAT--------TTTTTTTCCCTTAATCTCCTTTTGTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCCTTCAGTTTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCCCTTCCATTCTTACTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCTATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAATGTCTGGCTGCCGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCATGGACAATGTTCTGAGAAATCCTTGTTAGGATGAAACCCTGAGGT---GCTGTCTTGCCT----TATGATATT-AAAAAAAGACAC---GCAGCTAGTGTGGAGTTTTATTGGCTACAAAATAGATGCACAATGATGAGAATCTGAAGGCTGT--------AGTAGGAAAGTAGAGCTTTATC---CTCATAAACTCGCACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGAT-------TGTTACAGAAAAAAAAAAATAAAAGTTTCTGAGTCTGATAACTCCAAGGGTATCTTTTAGAACTCACTCATTGGTGTCTGCGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAACAGGCGGAAGCTTTCATTGGTCTCATGCATGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47942009 777 - 81552678 CTCTGGATCCTAATATTTGCAATTTGGATTTTGGACGAGTTACTTCCCCTTTTAGAGCCTAAGTATCTGCCTGTGATTAGAA--------TTTTTTTCCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTGTTTTAGGCCTTTCAGGTTTCTTCCTTTTTAAAAGTGAGATAGCATACTTTTCGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCGCTTCCCTTCCTACGGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCTGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCATGGACAATGTTCTGAGAACCCCTTGTTAGGATGAAACCCTGAGGT---GCTGTCTTGCTT----TATGATATT-AAAAAAAGACACGATGCAGCTAGTGTGGAGTTTTATTGGCTAAAAAATAGATGCACAATGATGAGAATCTGAAGGCTGC--------AGTAGGAAAATAGAGCTTTACC---CTCATAAACTCGCACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGACAT-------TGTTACAG-AAAAAAAAAATAAAAGCTTCTGAGTCTGATAACTCCAAGGGTATCTTTTAGAACTCACTCATTGGTGTCTGCGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAACAGGTGGAAACTTTCACTGGTCTCATGCATGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53052769 788 + 80904711 TTCTGGATCCTAATATTTGCAATTTGGATTTTGGATGAGTTACTTCCCCTTTTAGATCCTTAGTATCTGTCTGTAATGAGAATTTTTTTTTTTTTTTTCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCCTTCAG-TTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCCCTTCCCTTCCTGCTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCTGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCACGGAAAATGTTTTGAGAACCCCTTGTTAGGATGAAACACTGAGGT---GCTGTTTTGCCT----CATGATATTAAAAAAAAGACACCATGCAGCTAGTGAGGAGTTTTATTGGCTACAAAATAGACGCACAATGATGAGAATCTGAAGGCTGC--------CGTAGGAAAGTAGAGATTTACA---CCCATAAAATCACACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGATTGTAGAATGTTACAG-AAAAAAATAATACAAGTTTCTGAGTCTGATAACTCCAAAGATATCTTTTAGA----ACTCATTGGTGTCTGGGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAATAGGCAGAAACTTTCACTGGTTTCATGCATGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52575655 786 + 80997621 TTCTGGATCCTAATATTTGCAATTTGGATTTTGGATGAGTTACTTCCCCTTTTAGATCCTTAGTATCTGTCTGTAATGAGAA--TTTTTTTTTTTTTTCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCCTTCAG-TTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCCTCCCTTTCTCTGTTTCCTCCCTTCCCTTCCTGCTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCTGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCACGGAAAATGTTTTGAGAACCCCTTGTTAGGATGAAACACTGAGGT---GCTGTTTTGCCT----CATGATATTAAAAAAAAGACACCATGCAGCTAGTGAGGAGTTTTATTGGCTACAAAATAGACGCACAATGATGAGAATCTGAAGGCTGC--------CGTAGGAAAGTAGAGATTTACA---CCCATAAAATCACACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGATTGTAGAATGTTACAG-AAAAAAATAATACAAGTTTCTGAGTCTGATAACTCCAAAGATATCTTTTAGA----ACTCATTGGTGTCTGGGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAATAGGCAGAAACTTTCACTGGTTTCATGCATGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47620730 786 + 74645514 TTCTGGATCCTAATATTTGCAATTTGGATTTTGGATGAGTTACTTCCCCTTTTAGAGCCTCAGTATCTGTCtgtaatgagaa--ttttttttttttttccttaatctcCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCccttcag-ttttttcctttttaaaagtgaGTTAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTGGGCctccctttctctgtttcctcccttcccttcctgctgGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATGCCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGTGTCTGGCTGCTGTGAACATGTCTGATG-------TCTGGAGATTTCTCTGGATCTTCCACGGAAAATGTTCTGAGAACCCCTTGTTAGGATGAAACACTGAGGT---GCTGCTTTGCCT----catgatattaaaaaaaagacaccatGCAGCTAGTGAGGAGTTTTATTGGCTACAAAATAGACGCACAATGATGAGAATCTGAAGGCTGC--------CGTAGGAAAGTAGAGCTTTACA---CCCATAAACTCACACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGACTGTAGaatgttacag-aaaaaaataatacaagtttCTGAGTCTGATAACTCCAAAGATATCTTTTAGA----ACTCATTGGTGTCTGGGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAATAGGCAGAAACTTTCACTGGTTTCATGCATGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9888822 791 - 75148670 TTCTGGATCCTAGTATTTGCAATTTGGATTTTGGATGAGTTACTTCCCCTTTTAGAGCCTTAGTATCTGTCTGTAATGAGAA----TTTTTTTTTTTTCCTTAATCTCCTTTTCTAGCTTAGAGT-AGCCTAAAAGAGAGTTACTCTTTTAGGCCCTTCAG-TTTTTTCCTTTTTAAAAGTGAGATAGCATACTTTTTGGTCATCTCACACTCCCAGTGAGGCTTTCTCGGCCTCCCTTTCTCTGTTTCCTCCCTTCCCTTCCTGCTGGCAGAAGTGTGGATTGTGGAGAGCCTCATGACCCATGACTCATTTCTAGGTTGCCTGGCTACAGGGTGACAATTCTGCCCAGCGTCTGGCTGCTGTGAACATGTCTGATGTCTGATATCTGGAGATTTCTCTGGATCTTCCATGGACAATGTTTTGAGAACCCCTTGTTAGGATGAAACACTGAGGT---GCTGTTTTGCCT----TATGATATTAAAAAAAAGACACGATGCAGCTAGTGAGGAGTTTTATTGGCTACAAAATAGATGCACAATGATGAGAATCTGAAGGCTGC--------AGTAGGAAAGTAGAGCTTTACA---CCCATAAAATCACACTTTGATTCGAAAAGT---GCAATATATTAAGAGCATTATGAGAAGTCTGGTGAGATTGTAGAATGTTACAG-AAAAAAATAATACAAGTTTCTGAGTCTGATAACTCCAAAGATATCTTTTAGA----ACTCATTGGTGTCTGGGCAAGGACTTTCC-TTGGGGGAAAATAGATTTTACAATAGGCAGAAACTTTCACTGGTTTCATGCATGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112732943 758 + 159171411 CTCAGGATCCTAATATTTGCAATTTGGATCTTAGATGAGTTACTTCCCCTTTTAGAGCCTTAGTATCTGCCTGTAATGAAAA-------TTTTTTTCCCCTTAATTTCCTTTTCTAGCTTGCAATAAACCTAAAAGATAGTTACTCTTTTAGGCCATTCAGCATTTTTCCTTCTTAAAAGTGAGATAGCATAGTTTTTGGTCATCTCATACTCCCAGTGAGGCTTTCTGGGCCT-CGTTTCTCTGTTTCCTC-CTCCTCTTCCTCCTGGCAGAAGTGTGGATTGTGGAGAGCCTCATG--------------CCCAGGTTACCTGGCTACAGGGTGACAATTCTGCTCAGTGTCTGGCTGCTGTGAACGTGCCTGATG-------TC--GAGATTTCTCTGGATCTTCCATGAACAATGTTCTGAGAAACCCTTGTTAGGATGAGACCTCGAGGT---GCTGTCTTGCCT----CATGATATT-AAAAAAAGACACGATGTAGCTAGTGTGGAGTTTTATTGGCTACAAAATAGATGCACAATGATGAGAATCTGAAGGCTAC--------AGTAGGAAAGGAGAGCTTAAT----CTCATAAACTCACGC--TGATTCGAAAAGT---GCAATATATTAAGAGCATTATAAGAAATCTGGTGAGAT-------TGTTACAG-AGGAAAAAAAGAAAAGTTTCTGAGTCTGATAACTCCAAGGATATCTTTTAGAACTCACTCATTAGTGTCTGGGCAAGGACTTTCC-TTGGGGTAAAATAGATCTTACAACAGGCAGAAATGTTTATTGGTCTCATGCTTGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99477555 651 + 122082543 CCTTGGCTCCTGGCATTGGCAATTTGGGT-----------------------------CTTAGTGTTTCTGTTTAATGAAAT------------CTATCCCTAATCTCCTTTCTTAATTTGAATT-------------------TATATCTGGTGC-TCAGCTACTTTCCT----------------ACATA-TATTCGGCCACCTTA----------GAGACGTTT--------CCTTTCTCTATATATCCCCCTCTTTTC-TGCTAGCAGAAA---AGGCTCTAGAGACCCTCAAGAACCATGCCTTATCCCTTGG-TGCATAGCTTCAGG-----------------------------GTGAACACATATGGTA-------TTTGAAGATCCCTCTAGATCTTTCACAGAC-ACGCTTCACAAATATCTCAGTAGGA--AGACCCCGAGGC---CCTGTCTTGCCT----AATGACAT--AGGAGAAGACAGGATGCCACCTGTATGGAGGTCTATTGGCTCCAAACCAAATGCATGTTGATG-GACCCCGGACACTGTACCATGAGAGCAGGAGAGTAGAGCTTTA-A---TTTATAAACTTCTTCTTTCACTCAAAAATTCCAACAATATATTAAGAGCATCATGGGAAGTCCTGTGAGAC-------CATTATAG-AGAA---------AAGTTTCTGAATCTGAAAACTCCAAGGATTTCCGTCGAGACTCACCCATTAGCGCGGAGACAAAGACTTTCCATAGGGGGAGTGTGGTTTTTACAACAGGCAGAAAC--TCCTTGGCTTCATATATGC i mm10.chr11 I 4 C 0 s canFam3.chr9 39306195 726 - 61074082 -CTCGGGTCCTAATATTTGTATTTTAgatgttggacaagtcacttcctcttttagggtcttagtgtctgtttgtaataaggg-------TTTTCTCCCCCTGAATTCCCTTCTCTAATTGTATGT-A-------------------------------------------TGTATGTATGTGAGCTAGAATAATTTTTGGTCATCTCACATTCCCAGTGAGACTTTCTAGGCCTTCC-TTCTCTGTTT-----TTCCCCTTCCTGTTGGCAGAGG-------TCTGGAAAGCCTCATGAGCCACATCTTGTCACTAGGTTGAATGGCTGCAGTGTAACAATTCTGCCCAGTGTTTGGCTGCCGCAGACATGGTCAAAG-------TATTAAGGTCCCTT----TCTTTCATGGACAGTGCCCTAAGAATCTTTTCTTAGGATGAGACCTTGATATAAAAATGACATGAATATGATGTGGTAT--AAACAAAGACATGATGCAGCTGGTATAGAGTTTTATTGACTACAAAACAG-CATGTAGCAATGGCAATCTAAAGATTGT--------AGTAGGAAAGTAGAGCTTTAAAAAGCTCATAAACTCATACTTTGATTCAAAAAGTATAGCAATATATTAAGATCATTATGGAATGTCTGGTGAGATTG-----TCTTACAG-AGGAAAAAAAT--AAGATTCTGAGTTTGATAACTTCAAGGATACCTCTTAGGACTCACCCCTT--TGTCTGGGCAAGAATTTCCA-TTGGGGAAAAGTAGTTCTTATAATAGGCCAAAACTTTTATTGGCCTTATGCATAC i canFam3.chr9 C 0 C 0 a score=4645145.000000 s hg38.chr17_JH159146v1_alt 72266 1256 + 278131 TTTTGGATTTCATTCACTTGACAAAGAACTAATCTTCCGTTGATGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACACTGAGAAAAAGAGCATGGAAGATGTCACTGCCATGCTTCTTCCACCATCTGAACTGTACTCATTTTCATTTCTCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCC-AAATGATCACTAAGCAATGAGGTGGGCTCTGCTGCTGGGAAAAGGGATTTCCCAAAGGAGGGATTTT--CTCCCACTCTCCAGGAAATGAGGATCTCTGAACAGTGTCACCTTCTGGAGGTGAAGACCTTCATCATAGGTGTGCCTCATATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCACT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaagtctagaaagcatgccacatgaggaatgggtgagaagccaaggatgcttaccatgg---CTGTTTTCAAATATATAA---CTTATTTGAATAAGTGC-CTGTTGAAACATCAATAAAGCAATTCTAGACCATAGGGAAGAATTGAAATCATTAATAAATTTACAAGGGAGAATTTTGTTAAATTAAAACCTCTC-----CATTGG-------GACCAT--CCCATCAAGT-AT-GGGTTCCCCATCCTAAGACATGTGTGAAGAGAGTCTCAAAGACC-CTTGTC-TTATTTTGTAGATGGGTAGCAGTGAGACCAGCTGTCCTGTGATGATTACTCCAACT--GATTCTTTGAATCTCCAATGCCTTAGAATAGGTTTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCCCAGACTACAGTCTCCTGCAACTTttctgtgagatattaaaggtaatctgagaaagcat-gtttccaggtcaaagatgtttgggaatactgggctaaacaaagttaaactttt-gttgtttctacctctttcttgttccttttctccttcaaagcagtacctgttccatctttaatacactgaactg--caacaggactgtccaagaagaggatcatggcacacagtatttc-----------------------------------------------------------------------------------------------------taaccttatctggccatagaacACAGTGTTCGTAATACACTATTCAAATCTCATGG--AACACGAGTGTTCAACAGAA--TCA--TCTGAGAAATGAAATCATGAAATCATTGCCTCTTAGTTTTCTAGGGGTTTAGTAA--------ACTGACTCCATTACTTAATAG--AGACATAATACTATTAATTATCATT s panTro4.chr17 66192577 1256 - 82630442 ttTTGGATTTCATTCACTTGACAAAGAACTAATCTTCCGTTGATGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACACTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCTTCCACCATCTGAACTGTACTCATTTTCATTTCTCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCC-AAATGATCACTAAGCAATGAGGCGGGCTCTGCTGCTGGGAAAAGGGATTTCCCAAAGGAGGGATTTT--CTCCCACTCTCCAGGAAATGAGGATCTCTGAACAGTGTCACCTTCTGGAGGTGAAGACCTTCATCATAGGTGTGCCTCATATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCACT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaagtctagaaagcatgccacatgaggaatgggtgagaagccgaggatgcttaccatgg---CTGTTTTCAAATATATAA---CTTATTTGAATAAGTGC-CTGTTGAAACATCAATAAAGCAATTCTAGACCATAGAGAAGAATTGAAATCATTAATAAATTtacaagggagaattttgttaaactaaaacctctc-----cattgg-------gaccat--cccatcaagt-at-gggttccccatcctaagacatgtgtgaagagagtctcaaagacc-cttgtc-ttattttgtagatgggtagcagtgagaccagctgtcctgtgatgattactccaact--gattctttgaatctCCAATGCCTTAGAATAGGTTTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCCCAGACTACAGTCTCCTGGAACTTttctgtgagatattaaaggtaatctgagaaagcat-gtttccaggtcaaagatgtttgggaatactgggctaaacaaagttaaacTTTT-GTTGTTTCTACCTCTTTCTTGTTCCTTTTCTCCTTCAAAGCAGTACCTGTTCCATCTTTAATACACTGAACTG--CAACAGGACTGTCCAGGAAGAGGATCACGGCacacagtatttc-----------------------------------------------------------------------------------------------------taaccttatctggccatagaacacagtgttcgtaatacactattcaaatctcatgg--aacacgagtgttcaacagaa--tca--tctgagaaatgAAATCATGAAATCATTGCCTCTTAGTTTTCTAGGGGTTTAGTAA--------ACTGACTCCATTACTTAATAG--AGACATAATACTATTAATTATCATT i panTro4.chr17 I 422 C 0 s ponAbe2.chr17 24722136 1254 - 73212453 TTTTGGATTTCATTCACTTGACAAAGAACTAATCTTCCGTTGATGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACGCTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCTTCCACCATCTGAACTGTACTCATTTTCAGTTCTCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCC-AAATGATCACTAAGCAATGAGGCAGGCTCTGCTGCAGGGAAAAGGGATTTCCCAAAGGAGGGATTTT--CTCCCACTCTCCAGGAAATGAGGATCTCTGAACAGTGTCACCTTCTGGAGGTGAAGACCTTCATCATAGGTGTGCCTCATATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCACT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCGGGGTGCCTCATTTTaaagtctagaaggcatgccacatgaggaacggatgagaagccaaggatgcttaccatgg---CTGTTTTCAAATATATAA---CTTATTTGAATAAGTGC-CTGTTGAAACATCAATAAACCAATTCTAGACCATAGGGAAGAATTGAAATCATTAATAAATTTACAAGGGAGAATTCTGTTGAACTAAAACCTCTC-----CATTGG-------GATCAT--CCCATCAAGT-AT---GTTCCCCATCCTAAGACACGTGTGAAGAGAGGCTAAAAGACC-TTTGTC-TTATTTTGTAGATGGGTAGCAGTTAGACCAGCTGTTCTGTGATGATTACTCCAACT--GATTCTTTGAATCTCCAATGCCTTAGAATAGGTTTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCCCAGCCTACAGTCTCCTGGAACTTTTCTGTGAGATATTAAAGGTAATCTGAGAAAGCGT-GTttccaggtcaaagatgtttgggaatactgggctaaacaaagttaaacTTTT-GTTGTTTCTTCCTCTTTCTTGTTCCTTTTCTCCTTCAAAGCAGTACCTGTTCCATCTTTAACATACTGAACTG--CAACAGCACTGTTCAAGAAGAGGATCATGGCACACAGTATTTC-----------------------------------------------------------------------------------------------------TAACCTTATCTGGCCATAGAACACAGTGTTCATAATACATTATCCAAATCTCATGG--AACACGAGTGTTCAACAGAA--TCA--TCTGAGAAATGAAATCATGAAATCATTGCCTCTTAGTTTTCTAGAGGTTTAGTAA--------ACCGACTCCATTACTTAATGG--AGACATAATACTATTAATTATCATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47942786 1355 - 81552678 TTTTGGATTTCATTCACTTGACAAAGAACTAATCTTCCGTTGATGGTCTCCTGGGTTATTGCCTTGATCTTTGGAGTTGCAGATGCTGAGAAAAAGAGCACAGAAGATGTCACTGCCATGCTTCTTCCACCATCTGAACTATACTCATTTTCATTTCTCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCC-AAATGATCACTAAGCAATGTGGCGGGCTCTGCTGCAGGGAAAAGGGATTTCCCAAAGGAGGGATTTT--CTCCCACTCTCCAGGAAATGAGGATCTCTGAACAGTGTCACCTTCTGGAGGTGAAGACCTTCATCATAGGTGTGCCTCATATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCACT----GCAC-AGATTCCTTGAGGTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaagtctagaaagcatgccacatgaggaatgggtgagaagccaaggatgcttaccatgg---ctgttttcaaatatataa---cttatttgaataagtgc-ctgttgaaacatcaataaaccaattctagaccatagggaagaactgaaatcattaataaatttacaagggagaattttgttaaattaaaacctctc-----catt-g-------gaccat--cccatcaagt-at-gggttccccat-ctaagacatgtgtgaagagaggctcaaagacc-cttgtc-ttattttgtagatgggtagcagttagaccagctgttctgtgatgattactccaacc--gattctttgaatctCCAATGCCTTAGAATAGGTTTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCCCAGACTACGGTCTCCTGTAACTTttctgtgagatattaaatgtaatctgagaaaccat-gtttccaggtcaaagatgtttgggaatactgggctaaacagagttaaactttg-gttgtttcttcctctttcttgttccttttctccttaaaagcagtacctgttccatctttaacatactgaactg--caacaggactgttctagaagaggatcatggcacacagtatttctttttattttttattttattatgattatactttaagttttagggtacttgtgcacaatgtgcaggtttgttacatatgtatacatgggcacacagtatttctaaccttatttggccatggaacacagtgttcataatacactattcaaatctcatgg--aacatgagtgttcaacagaa--tca--tctgagaaatgAAATCATGAAATCATTGCCTCTTAGTTTTCTAGGGGTTTAGTAA--------ACCGACTCCATTACTTAATAG--AGACATAATACTATTAATTATCATT i nomLeu3.chr19 C 0 I 634 s rheMac3.chr16 53053557 1259 + 80904711 TTTTGGATCTCATTCACTTGACAAAGAACTAATCTTCCGTTGACGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACGCTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCCTCCACCATCTGAACTGTACTCATTTTCAGTTCCCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCCAAAACGATCACTAAGCAATATGGCGGGCTCTGCTGCAGGCAAAAGGGATTTCCCCAAGGAGGGATTTT--CTCCCTCTCTCCAGGAAATGAGGGTCTCTGAACAGTGTCACCTTCTGGAGGTGAAG-CCTTCATCTTAGGTGTGCCTCCTATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCGCT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaggtctagaaaacatgccacatgaggaatgggtgagaagccagggatgcttactgtgg---caattttcaaatatataa---cttatttgaataagtgc-ctgttgaaacatcaataaaccaattctagaccacagggaagaattgaaatcattaataaaattacaagggagaattttgttaaattaaaacctctc-----caatgg-------ggccat--cccatcaagt-at-gggttccccatcctaggacacatgtgaagagaggctcaaagacc-cttgtc-ttattttgtagatgggTAGC----AGACCAGCTGTTCTGTGATGATTACTCCAACT--GATTCTTTGAATCTCCAGTGCCTTAGTATAGATCTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCGCAGACTACAGCCTCCTGGAACTTttctgtgagatattaaaggtaatctgagaaagcat-gtttccaggtcaaaggtgtttgggaatactgggcaaaacaaagttaaactctt-gtcatttcttcctctttcttgttccttttccccttcagagcagcacctgttccatctttaacatactgaactgcacaacaggactgttcaagaagaggatcatggcacacagtatttc-----------------------------------------------------------------------------------------------------taacctcatctggccatagaacacagtgttcataattcactattcaaatctcatgg--aacacgagtgttcaacagaa--tca--tctgagaaatgA---CATGAAATCTTTGCCTCTTAATTTTCCAGGGGTTTAGTAAACTGACTAACCGATTCCATTACTTAAGAG--AGACATAATACTATTAATTATCATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52576441 1259 + 80997621 TTTTGGATCTCATTCACTTGACAAAGAACTAATCTTCCGTTGACGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACGCTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCCTCCACCATCTGAACTGTACTCATTTTCAGTTCCCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCCAAAACGATCACTAAGCAATATGGCGGGCTCTGCTGCAGGCAAAAGGGATTTCCCCAAGGAGGGATTTT--CTCCCTCTCTCCAGGAAATGAGGGTCTCTGAACAGTGTCACCTTCTGGAGGTGAAG-CCTTCATCATAGGTGTGCCTCCTATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCGCT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaggtctagaaaacatgccacatgaggaatgggtgagaagccagggatgcttaCTGTGG---CAATTTTCAAATATATAA---CTTATTTGAATAAGTGC-CTGTTGAAACATCAATAAACCAATTCTAGACCACAGGGAAGAATTGAAATCATTAATAAAATTACAAGGGAGAATTTTGTTAAATTAAAACCTCTC-----CAATGG-------GGCCAT--CCCATCAAGT-AT-GGGTTCCCCATCCTAGGACACATGTGAAGAGAGGCTCAAAGACC-CTTGTC-TTATTTTGTAGATGGGTAGC----AGACCAGCTGTTCTGTGATGATTACTCCAACT--GATTCTTTGAATCTCCAGTGCCTTAGTATAGATCTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCGCAGACTACAGCCTCCTGGAACTTttctgtgagatattaaaggtaatctgagaaagcat-gtttccaggtcaaaggtgtttgggaatactgggcgaaacaaagttaaactctt-gtcatttcttcctctttcttgttccttttccccttcagagcagcacctgttccatctttaacatactgaactgcacaacaggactgttcaagaagaggatcatggcacacagtatttc-----------------------------------------------------------------------------------------------------taacctcatctggccatagaacacagtgttcataattcactattcaaatctcatgg--aacacgagtgttcaacagaa--tca--tctgagaaatgA---CATGAAATCTTTGCCTCTTAATTTTCCAGGGGTTTAGTAAACTGACTAACCGATTCCATTACTTAAGAG--AGACATAATACTATTAATTATCATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47621516 1259 + 74645514 TTTTGGATCTCATTCACTTGACAAAGAACTAATCTTCCGTTGACGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACGCTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCCTCCACCATCTGAACTGTACTCATTTTCAGTTCCCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCCAAAATGATCACTAAGCAATATGGCAGGCTCTGCTGCAGGCAAAAGGGATTTCCCCAAGGAGggatttt--ctccctctctccaggaAATGAGGGTCTCTGAACAGTGTCACCTTCCGGAGGTGAAG-CCTTCATCATAGGTGTGCCTCCTATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGTCTGTGGGCTTTGTAGCGCT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCCATTCAGGGTACCTCATTTTAAGGTCTAGAAAGCATGCCACCTGAGGAATGGGTGAGAAGCCAGGGATGCTTACTGTGg---cagttttcaaatatataa---ctTATTTGAATAAGTGC-CTGTTGAAACATCAATAAACCAATTCTAGACCATAGGGAAGAATTgaaatcattaataaaattacaagggagaattttgttaaattaaaacCTCTC-----CAATGG-------GGCCAT--CCCATCAAGT-AT-GGGTTCCCCATCCTAGGACACGTGTGAAGAGAGGCTCAAAGACc-cttgta-ttattttgtagaTGGGTAGCAGTTAGACCAGCTGTTCTGTGATGATTACTCCACCT--GATTCTTTGAATCTCCAGTGCCTTAGTATAGATCTATCACAAA--CTAATCAG-AAAGTGCCACTTGTCGCAGACTACAGCCTCCTGGAACTTTTCTGTGAGATATTAAAGGTAATCTGAGAAAGCAT-GTTTCCAGGTCAAAGGTGTTTGGGTATACTGGGTGAAACAAAGTTAAACTTTT-GtcgtttcttcctttttcttgttccttttccCCTTCAAAGCAGTACCTGTTCCATCTTTACCATACTGAACTGCACAACAGGACTGTTCAAGAAGAGGATCATGGCACACAGTATTTC-----------------------------------------------------------------------------------------------------TAACCTCATCTGGCCATAGAACACAGTGTTCATAATTCACTATTCAAATCTCATGG--AACACGAGTGTTCAACAGAA--TCA--TCTGAGAAATGA---CATGAAATCTTTCCCTCTTAATTTTCCAGGGGTTTAGTAAACTG----ACCGATTCCATTACTTAATAG--AGACATAATACtattaattatcatt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9889613 1263 - 75148670 TTTTGGATCTCATTCACTTGACAAAGAACTAATCTTCCGTTGACGGTCTCCTGGGTTATGGCCTTGATCTTTGGAGTTGCAGACACTGAGAAAAAGAGCACGGAAGATGTCACTGCCATGCTTCCTCCACCATCTGAACTGTACTCATTTTCAGTTCCCTGCTGTCAGCCCCTGAAGGCTCTCAGTGCCTTCCAAAACGACCACTAAGCAATATGGCGGGCTCTGCTGCAGGCAAAAGGGATTTCCCCAAGGAGGGATTTT--CTCCCACTCTCCAGGAAATGAGGGTCTCTGAACAGTGTCACCTTCTGGAGGTGAAG-CCTTCATCATAGGTGTGCCTCATATGGAACCTAGTCTCTGACCACAAGCACTTGAGGAGTTCTTTCTCTGCCTGTGGGCTTTGTAGCGCT----GCAC-AGATTCCTTGAGCTTAC-AGAGCACTTAGTGCTATTCAGGGTACCTCATTTTaaggtctagaaagcatgccacatgaggaatgggtgagaagccagggatgcttaCTGTGG---CAGTTTTCAAATATATAA---CTTATTTGAATAAGTGC-CTGTTGAAACATCAATAAACCAATTCTAGACCACAGGGAAGAATTGAAATCATTAATAAAATTACAAGGGAGAATTTTGTTAAATTAAAACCTCTC-----CAATGG-------GGCCAG--CCCATCAAGT-AT-GGGTTCCCCATCCTAGGATATGTGTGAAGGGAGGCTCAAAGACC-CTTGTC-TTATTTTGTAGATGGGTAGCAGTTAGACCAGCTGTTCTGTGATGATTACTCCAACT--GATTCTTTGAATCTCCAGTGCCTTAGTATAGATCTATCGCAAA--CTAATCAG-AAAGTGCCACTTGTCGCAGACTACAGCCTCCTGGAACTTttctgtgagatattaaaggtaatctgagaaagcat-gtttccaggtcaaaggtgtttgggaatactgggtgaaacaaagttaaacTTTT-GTTGTTTCTTCCTCTTTCTTGTTCCTTTTCCCCTTCAGAGCAGTACCTGTTCCATCTTTAACATACTGAACGGCACAACAGGACTGTTCAAGAAGAGGATCATGGCACACAGTATTTC-----------------------------------------------------------------------------------------------------TAACCTCATCTGGCCATAGAACACAGTGTTCATAATTCACTATTCAAATCTCATGG--AACACGAGTGTTCAACAGAA--TCA--TCTGAGAAATGA---CATGAAATCTTTGCCTCTTAATTTTCTAGGGGTTTAGTAAACTGACTAACCGATTCCATTACTTAATAG--AGACATAATACTATTAATTATCATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112733701 1242 + 159171411 TTTTGGATCTCATTCACTTGACAAAGAACTAATCTTCCATTGATGGTCTCCTGTGTTATGGCCTTGATCTTTGAAGTTGCAGACGCTGAGAAAAAGAGTACGGAAGACGTCACTACCATGCTTCCTCCACCATCTGAACTGAACTCATTTTCAGTTCCCTACTGTCAGTCCCTGAAGGCTCTCGGCGCCTTCCAAAATGATCACTAAGCAATATGGCGGGCTCTGCTGCAGGGAAAAGGGATTTCCTCAAGGAGGGATTTT--CTCCCACTCTCCAG---ATGAGGATCTCTGAACAGTGCCACCTTCTGGAGGTGAAGACCTTCATCATAGCTGTGCCTGATGTGGAACCTAGTCTCTGACTGCAAGCACTTGGGGAATTCTTTCTCTGCATGTGGGCTTTGTAGCGCT----GCAC-AGATTCCTTGAGCTTATGGGAGCACTCAGGGCTATTCAGGGTACCACCTTTTaaggtctagaaagcatgccacatgagggctgggtgagaagccagggatgcttaccatgg---CTGTTTTCAAATATATAA---CTTACTTGAGTAAGTGC-CTGTTGAAACATCAATAAGCCAATTCTATTCCACAGGGAAGAACTGAAATCATTAATAAAATtacaagggagaattttgttaaaataaaacctctc-----caatgg-------gtctgc--cccatcaagt-at-gggtttctcatcctaggacatgtgtgaagagaggctcaaagacc-cttgtc-ttattttgtagaggggTAGA----AGACCAGGTGTTCTGTGATGATTACTTCAA--------CTTTGAATCTCCAGTGCCTTAGTACAGATTTATCATAAA--CTAATCGG-AAAGTGCCACTTGtcccagactatggtctcctggaacttttctgtgagatattaaaggcaatctgagaaagtat-gtttctgggtcaaagatgtttgggaatactgcactaaacaaagttaaacTTCT-GTTGTTTCTTCCTCTTTCTTGTTCCTTTTTTCCTTCAAAGCAGTACCTGTTCCATctttaacatgctgaaatg--caacaagactgttcaagaagaggataatggcacacagtgtttc-----------------------------------------------------------------------------------------------------taaccttaactggtcatagaacacatcatccataatacactattcaaatctcatgg--aacactagtgttcaacagaa--taa--tctgagacatgA---CATGAAATAATTGCCTCTTAATTTTCTAGGAGTTTAGTAA--------ACAGACACCATTACTTAATAG--AGACATAATACTATAAATTATCATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99478206 1224 + 122082543 TTTTGGATCTCATTCACTTGAGAAAGAACGATTCTTCCATTGACACTCTCTTGAGTGATGGCCTTGATCGTTGAAGCTTCAGATCCTGAGGGCAAGACCATCGGAGAGGTCACTGGTGGGCTTCCCACACCATTGACACCAAGCAAACATTCAAGTCCCTGCTCCCAGACCCTGTAAGTTTCCTGTGTCTT--------GTAACCAAGCTATATGGTGGGCTCTGCCACAGGGAGGAAAGACCTGACCTTGGAGGAA-ATC--CCCATGTCCTCCAGAAAGCAGAGATCTCTGAACAATGCTACTTTCTGGAGATCCAG----------------AACCTGGTACAGAAGTTGATCTCTGGCCACCAGCTCTTGAGGAGTGCTTTCCACTCACAAGGATTCTGTGGCTCT----TCACTACAGACTGTGTGTTTAT-GGAGTACTACAGGCCATCCAGGACATCGTGATTTAAGCTCTAGAAA-CATGAC-----AAGGGTGGGTGAGAGGCCAGGGATGTTCA---------CGGTCCTCAATGACACCATCCCTGATTTGAATAAGTGCTTTGCTGGCACATCAATAAACTGGTTCTAGGCCACAGGGAAGAATGGAAACTATTAATAAATGTACAAGGGGAA---TTGTAAAATGCAAGGCTCTTATCAGCATACG-------GTAGATTGTACATCAAGT-ATGGGGTTTCCCACCCCTGGATGCAGCTAAGAAGAGGTCTTGTGGCC-TCTGTG-CAATCTTTCAGAAACAAGGCAGTTAGAGCAGCTGCTCTGAAATGGTCAGTTCACCTCAGGTTCTCTGAATTGCTAACGCCTTAAAATAATTTTATTAAAACATCTAAGGAG-AAAGTAATGCATGGTCCATGCTGATCTGTGCTA-AACTTTTCTGTCATATGTCCATGGTAATCTGAGACAATGTGGTTCCCGGGTCACAGATG--TGAGACTATTGAGTTGGACAAAGTAAAACCTTTGGTTGTTTCTTTCTTGTTCTTGTCCCTTTCCTTCAACGAGGAAATGCTTGCTCTGTCTTGAGCGTACTGTTAGG--CAGCCTGCCTGTTACAGAGAAGGAT------ACATTGTATTCC------------------------------------------------------------------------------------------------AGTCCCAACCTCACCTGGCCTCAGAACACATCTTTCCTGATTCCATACTCAAATCTCATGTGCACCCCTACTGCTCAACGCAG--CCAGGCTTGGGAACTGA--------------TGCGATGTAATGTCTTAGGGGTCTACTTA--------ACAGACTTCATTATTTAAGAGCAAGAGAGAATTCTAACAATCACCTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 39306921 1243 - 61074082 TTTTCGATCTCATTCACTTGAGAAAGAATTATTCTTCCATTGACGCTCTCCTGTGtgatggccttgatcttt---gttgctga-----gggaaaaaagcaatgaagagatgactgccatgctcctcttaccatcTGAA--AAAGTCATTTGTAGTTCCCTGTTCTCAGTACCTGAAGCTTCCCTGTCCCTTCCAAAATGATCACACAGCAATATGGCAGGTTCTGCTG-GGGTTAAAGAGATCTCACCAAAGAAGGTTTTTTCCTCCCACCCTCCAGGAAACAAGAATGTGTGAATAGTGTCATCATCTAGAGGCCAAGACCTGCATCTTAGATTTGTCTGATACAGAATCTAGGCTCTGACTATATGCTCTTTGGGAGGCCTTCTGGCTTCTGCATGCTTTGTTGTACTTGTATCAC-AGGTTCTATGAGCTAAC-AGAGCACTAAATACCATTCTGGACACCTCATTTAAAGATCTAGAAAGCATG-------AAAGATGGCTGAGAAGCCAGAGATGCTTATCATGGTCACTGTTTTCAAAGTTATGA---TTTACTTGAATATGTGCTTTGTTGACACACCAGGAAACTGATTCTAGACCAAAGGGAAGATCTAA---CATTAATAGAGatac-agggaaaactttgttaaatc--aacctctc-----caacagtagagtaggccac--tccatcaagtaat-gggttccctgtttctggacacgtgtaa--gtaggctaacagaccatttgtcaatatcttgcagagaagtagcagttagaccagctgccc-atgatggtccctgaaaccctgattctctgaatct--aATGCCTTAGAACACTTTTATCACAAA--CTAATCAGAAAAGTGCCACTTGTACCAAACTATGGTTTCTTAGAACTTTTCCATGAGATATTAAAGGCAATCTGAGAAAGTAGGGTTCCCAGGTCAAGGATTTTTGGTAACACCAAGTTAAGCA-AGTAAAACTTTT-GATAGTTCTTTCTCTTTTCTGTTTCTTTTCTCCCTCACAGGAGTGCCTGGTCTATCTTTAACTTACTGAAATG-----CATGACTGTTCATGAGGAGGATAGTGGTACCTAGCATTTC------------------------------------------------------------------------------------------------------AACCATTTCTGGTCATGGGACACAttttttgtaatacacaattaaagtctcacag--aacactaatgtttaacagaatgtag--tttggtaaatTA---TGTGAAATAATTTTCTTGTAAT---CTAGCAGTTTATTAA--------ACAGACCCCATAACTTAACAG--AGATGTAATAATATGAATGATCATT i canFam3.chr9 C 0 C 0 a score=32852.000000 s hg38.chr17_JH159146v1_alt 73522 14 + 278131 TTAATTT---TCTTTAC s panTro4.chr17 66193833 14 - 82630442 TTAATTT---TCTTTAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24723390 14 - 73212453 TTAATTT---TCTTTAC i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53054816 14 + 80904711 GTAATCT---TCTTTAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52577700 14 + 80997621 TTAATCT---TCTTTAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47622775 14 + 74645514 ttaatct---tctttac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9890876 14 - 75148670 TTAATCT---TTTTTAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112734943 11 + 159171411 TTAA------TCTTTAC i calJac3.chr5 C 0 C 0 s mm10.chr11 99479430 17 + 122082543 TCAATCTATGTCTTTAC i mm10.chr11 C 0 I 396 s canFam3.chr9 39308164 14 - 61074082 GCTATCT---ATTTTAT i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 47944141 634 - 81552678 I a score=16819.000000 s hg38.chr17_JH159146v1_alt 73536 7 + 278131 TGCTTGC s panTro4.chr17 66193847 7 - 82630442 TGCTTGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24723404 7 - 73212453 TGGTTGC i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53054830 7 + 80904711 CGCTTGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52577714 7 + 80997621 TGCTTGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47622789 7 + 74645514 cgcttgc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9890890 7 - 75148670 CGCTTGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112734954 7 + 159171411 TCCTTGC i calJac3.chr5 C 0 I 158 s canFam3.chr9 39308178 7 - 61074082 TGCTGGC i canFam3.chr9 C 0 C 0 e mm10.chr11 99479447 396 + 122082543 I e nomLeu3.chr19 47944141 634 - 81552678 I a score=46336.000000 s hg38.chr17_JH159146v1_alt 73543 19 + 278131 -------TTTTACCTA---TATTGAGGAC s panTro4.chr17 66193854 19 - 82630442 -------TTTTACATA---TATTGAGGAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24723411 19 - 73212453 -------TTTTATATA---TATTGAGGAC i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53054837 19 + 80904711 -------TTTTATATA---TATTGAGGAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52577721 19 + 80997621 -------TTTTATATA---TATTGAGGAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47622796 19 + 74645514 -------ttttatata---tattgaGGAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9890897 19 - 75148670 -------TTTTATATA---TATTAAGGAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112735119 19 + 159171411 -------TTTTATATA---TATTGAGGAA i calJac3.chr5 I 158 C 0 s canFam3.chr9 39308185 29 - 61074082 AGAGGACTTGCATGTGTATTATTGAAGAC i canFam3.chr9 C 0 C 0 e mm10.chr11 99479447 396 + 122082543 I e nomLeu3.chr19 47944141 634 - 81552678 I a score=473215.000000 s hg38.chr17_JH159146v1_alt 73562 166 + 278131 AAT---------------------------AATGA---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTCAT-----TGAAGATTCCTGACC-----------CAGGACATTTTGAACCCAGGACATTTGGGAGTACATTAAGGATTATGACTACTACAAAATGGATAACCATGCTAATTC---CTTAAAAACAGAGATTCAAA----CAATGAAGG s panTro4.chr17 66193873 166 - 82630442 AAT---------------------------AATGA---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTAAT-----TGAAGATTCCTGACC-----------CAGGACATTTTGAACCCAGGACATTTGGGAGTACCTTAAGGATTATGACTACTACAAAATGGGTAACCATGCTAATTC---CTTAAAAACAGAGATTCAAA----CAATGAAGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24723430 177 - 73212453 AAT---------------------------AATGA---GACCTTATA-TCATTTTGTATTAGCTAATTT--GTTAAT-----TGAAAATTCCTGACCGTTTGGGAGTGAAATAAATTTTGAACCCAGGACATTTGGGAGTACACTAAGGATTATGACTACTACAAAATGGATAACCATGCTAATTC---CTTAAAAACAGAGATTCAAA----CAATGAAGG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53054856 177 + 80904711 AAT---------------------------AATGA---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTAAC-----TGAAAATTCCTGACCATTTGGGAGTGAAATAAATTTTGAACCCAGGACATTTGGGAGTACACTAAGGATTATGACTACTACAACATGGATAACCATGCTAATTC---CTTAAAAATAGAGATTCAAA----CAATGAAGG i rheMac3.chr16 C 0 I 1 s macFas5.chr16 52577740 177 + 80997621 AAT---------------------------AATGA---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTAAC-----TGAAAATTCCTGACCATTTGGGAGTGAAATAAATTTTGAACCCAGGACATTTGGGAGTACACTAAGGATTATGACTACTACAACATGGATAACCATGCTAATTC---CTTAAAAATAGAGATTCAAA----CAATGAAGG i macFas5.chr16 C 0 I 1 s papAnu2.chr16 47622815 177 + 74645514 AAT---------------------------AATGA---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTAAC-----TGAAAATTCCTGACCATTTGGGAGTGAAATAAATTTTGAACccaggacatttgggagtacactAAGGATTATGACTACTACAACATGGATAACCATGCTAATTC---CTTAAAAATAGAGATTCAAA----CAATGAAGG i papAnu2.chr16 C 0 I 1 s chlSab2.chr16 9890916 173 - 75148670 GAT---------------------------AATGG---GAGCTTACA-TCATTTTGTATTAGCTAATTT--GTTAAC-----TGAAAATTCCTG----TTTGGGAGTGAAATAAATTTTGAACCCAAGACATTTGGGAGTACACTAAGGATTATGACTACTACAACATGGATAACCATGCTAATTT---CTTAAAAATAGAGATTCAAA----CAATGAAGG i chlSab2.chr16 C 0 I 1 s calJac3.chr5 112735138 208 + 159171411 AATTTTCAATTAACAAATTAAGTAATACAAAATGAAGGGAGCTCTCATTCATTTTGTATTACTTAATTT--GTTAAT-----TGAAAATTCCTGACCGTTGGGGAGTGAAATAAATTTTGATCCCAGGACATTTGGGAGTATGCTAAGGATTATGACTACCACAGAATGGATAAGCAGGCTAATTC---CTTAAAAATAGAGATTCAAA----CAATGAAGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99479843 186 + 122082543 AAT---------------------------AACCA---GGACCCACT-TTGCTCTGAGGTACCTAAACT--GTTAACTTAATTGAAAGATTCTGGCTATCCAGGGGGAAAATAAAAACTGAGCTGAGGACATTAGGGAGCTGCGTATGAATTATGACTAATATGGAGTGGGCAGACAGGCCGATTA---GCTGAAGCAATAGTGTGAGAGGCGCGACGAAAC i mm10.chr11 I 396 C 0 s canFam3.chr9 39308214 181 - 61074082 AAT---------------------------ACTGA---GAGCTCACT-TTTTTCTTTTTTATCTAATTTGAGTTAAT-----TCAAAATTCCTTGCCATCTGGG-GTAAAATAAAAATCGAACACAGGATATTTGGGAGTACACTAAGGATTATGAGTACTATAGAATGAATAAACATGTTGATTCATTTTTTAAAAAGTAGATTCAAA----CAATGAAAG i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 47944141 634 - 81552678 I a score=1498966.000000 s hg38.chr17_JH159146v1_alt 73728 408 + 278131 AAA------TTTTTTACCTTTCATGCTCGACTTTGATTCTTCCCGTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACAATCATAACAACTTCTCAGGATGAACTAACTTCCTTCGCTTGCTTGTAAATCCTCTGCTCTTTAATGAGGATAATTGTCTGAGCTTAGTAGTCTCAAGGTCATGGGTTCACGGGAGAACCCGTCTGGATACAGAAGGCATTGGGTACCGCCTCCTGCTAACCCTGGAGTCAGGGGAAGTCCACCAACCATCCCC--TCCTTT----CAGCTGCAAGCT-TGGTTTTCT-------CTAGGATCCCTGCCAGG-GTCTGGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTCAAAGTTTGGTCTAGTGATGTTTTATTTATGTA-TTTTTAT s panTro4.chr17 66194039 408 - 82630442 AAA------TTTTTTACCTTTCATGCTCGACTTTGATTCTTCCCGTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACAATCATAACAACTTCTCAGGATGAACTAACTTCCTTCGCTTGCTTGTAAATCCTCTGCTCTTTAATGAGCATAATTGTCTGAGCTTAGTAGTCTCAAGGTCATGGGTTCACGGGAGAACCCGTCTGGATACAGAAGGCATTGGGTACCGCCTCCTGCTAACCCTGGAGTCAGGGGAAGTCCACCAACCATCCCC--TCCTTT----CAGCTGCAAGCT-TGGTTTTCT-------CTAGGATCCCTGCCAGG-GTCTGGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTCAAAGTTTGGTCTGGTGACGTTTTATTTATGTA-TTTTTAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24723607 409 - 73212453 AAA-----TTTTTTTACCTTTCATGCTCGACTTTGATTCTTCCCATGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACAATCATAATGACTTCTCAGGATGAACTAACTTCCTTTGCTTGCTTGTAAATCCTCAGCTCTTTAATGAGGATAATTGTCTAAGCTTAGTAGACTCAAGGTCATGGGTTCATGGGAGAACTCGTCTGGATGCAGAAGGCCTTGGGTACCGCCTCCTGCTAACCCTGGAGTCAGGGGAAGTCCACCAACCATCCCC--TCCTTT----CAGCTGCAAGCT-TGGTTTTCT-------CTAGGATCCCTGCCAGG-GTCTGGGCCTCAAGCCTGAGACCCCTGAGCGTCTCAGGCTGTTCAGAGTTTGGTCTGGTGATGTTTTATTTATGTA-TTTTTAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47944775 408 - 81552678 AAT------TTTTTTACCTTTCATGCTTGACTTTGATTCTTCCCGTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACCTTAGTATTAGCAACAATCGTAACAACTTCTCAGGATGAACTAACTTCCTTCGCTTGCTTGTAAATCCTCAGCTCTTTAATGAGGATAATTGTCTGAGCTTAGTAGTCTCAAGGTCATGGGTTCATGAGAGAACCCGTCTGGATGCAGAAGGCGTTGGGTACCGCCTCCTGCTAACCCTGGGGTCAGGGGAAGTCCACCAACCATCCCC--TCCTTT----CAGCTGCAAGCT-TGGTTTTCT-------CTAGGATCCCTGCCAGG-GTCTGGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTCAAAGTTTGGTCTGGTGATGTTTTATTTATGTA-TTTTTAT i nomLeu3.chr19 I 634 C 0 s rheMac3.chr16 53055034 411 + 80904711 AAT------TTTTTTACCTTTCATGCTCGACTTGGATTCTTCCATTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACGATCATAACAACTTCTCAGGATGGACTAACTTCCTTCTCTTGCTTGTAAATCCTCAGCTCTTTAATGAGGATAATTGTCTGAGCTTAGTAGCCTCACAGTCATAGGTTCACGGGAGAGCCGGACTGGATGCAGAAGGCATTGGGTACCGCCTCCTGTTAACCCTGGAGTCAGGGGAAGTCCACAAACCATCCCC--TCTTTTTAGCCAGCTGCAAGCT-TGGTTTCCT-------CTAGGATGCCTGCCAGG-GTC-GGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTTAGAGTTTGGTCCGGTGATGTTTTATTTATGTA-TTTTTAT i rheMac3.chr16 I 1 C 0 s macFas5.chr16 52577918 411 + 80997621 AAT------TTTTTTACCTTTCATGCTCGACTTGGATTCTTCCATTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACGATCATAACAACTTCTCAGGATGGACTAACTTCCTTCGCTTGCTTGTAAATCCTCAGCTCTTTAATGAGGATAATTGTCTGAGCTTAGTAGCCTCACAGTCATAGGTTCACGGGAGAGCCGGACTGGATGCAGAAGGCATTGGGTACCGCCTCCTGTTAACCCTGGAGTCAGGGGAAGTCCACAAACCATCCCC--TCTTTTTAGCCAGCTGCAAGCT-TGGTTTCCT-------CTAGGATGCCTGCCAGG-GTC-GGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTTAGAGTTTGGTCCGGTGATGTTTTATTTATGTA-TTTTTAT i macFas5.chr16 I 1 C 0 s papAnu2.chr16 47622993 411 + 74645514 AAt------ttttttACCTTTCATGCTCGACTTGGATTCTTCCATTGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACGATCATAACAACTTCTCAGGATGGACTAACTTCCTTCGCTTGCTTGTAAATCCTCAGCTCTTTCATGAGGATAATTGTCTGAGCTTAGTAGCCTCACAGTCATAGGTTCACGGGAGAGCCGGACTGGATGCAGAAGGCATTGGGTACTGCCTCCTGTTAACCCTGGAGTCAGGGGAAGTCCACAAACCACAGCC--TCTTTTCAGCCAGCTGCAAGCT-TGGTTTCCT-------CCAGGATGCCTGCCAGG-GTC-AGGTCTCAAGCCTGAGACCCCTGAGCTTCTCAGGCTGTTCAGAGTTTGGTCCGGtgatgttttatttatgta-tttttat i papAnu2.chr16 I 1 C 0 s chlSab2.chr16 9891090 411 - 75148670 AAT------TTTTTTACCTTTCATGCTCGACTTTGATTCTTCCATCGTCCTATAAAAGTGATAAAGGTTAAAGCTCACTTTAGTATTAGCAACGATCATAACAACTTCTCAGGATGGACTAACTTCCTTTGCTTGCTTGTAAATCCTCAACTCTTTAATGAGGATAATTGTCTAAGCTTAGTAGTCTCACGGTCATAGGTTCATGGGAGAGCCGGACAGGATGCAGAAGCCATTGGGTACTGCCTCCTGCTAACCCTGGAGTCAGGGGAAGTCCACAAACCATAGCC--TCTTTTCAGCCAGCTGCAAGCT-TGGTTTCCT-------CTAGGATGCCTGCCAGG-GTC-AGGTCTCAAGCCTGAGACCCCTCAGCTTCTCAGGCTGTTCAGAATTTGGTCCGGCGATGTTTTATTTATGTA-TTTTTAT i chlSab2.chr16 I 1 C 0 s calJac3.chr5 112735346 415 + 159171411 AATT---TTTTTTTTACCTTTCATGGTCGACTTTGATTCTTCCATTGTCCTATAAAAGTGATAAAGGTTAAAACTCACTTTAGTACTAGCAACAATCATAAAAACTTCTCAGAATGAACTAACTTCCTTCGGTTGCTTGTAAATCCTCAGCTCTTTAATGAGGATAATTGTCTGAGCTTAGTAGTCTCAAGGTCATGAGTTCATGGGCGAACCCATCTGGATGCAGAAGGCATTGGGTACTG-CTTCTACTAACCCTGGAGTTAGGGAATGTCCACCAACCATCCAT--TCCTTTCAGCCAGCTGCAAGCT-TGGTTTCCT-------CCAGGATCCCTGCCAGG-GTCTGAGTCTTAAGCCTGAGACCCCTGAGCTTCTCAGACTGTTCAGAGTTTGGTCTGGTGATGTTTTATTTATGTATTTTTTAT i calJac3.chr5 C 0 C 0 s mm10.chr11 99480029 393 + 122082543 ---AGATTCCCCTTTACCTTTCAGCCTTGACTCAGATCCATCCATCGTCCTAAGAAGGCAAAAAGGAAAAAAAGTCAA------GTTATCAACAATC---AGCCCTTCCCTTGGT------CCTTCCTTTGTATGCTTGCTATTTTTCAGCTCTTTAGGGAGGCTAATTG----AACCTGACAGATTCAAGATCATGAGATTGTGGGGG----CAACTGGATCCCGAAAA----GAGGGCCACCTTCCAGAAGTTCTGATATCAGGAGAATTCTCCCAAGTCTCCAT--GTCTTC----CTGTTCCTCTCTCCGGCTTCCTACAGCCACCAATATCCTTATCTGGAGTTTGCGTCTCATGTCTGGGTTTTCTGAGCTCCTCAGACTGGGTGTAGTTTGTTCCAACCACATTTTATTCATGTA-GTTTGAA i mm10.chr11 C 0 C 0 s canFam3.chr9 39308395 413 - 61074082 -AA------ATTTTTACCTTTAACACTTGACTTCGATTCCTCCATTGTCCTATAAAAATGATAAGAATTACAGCTCATTCTAGTGTTAGCAACAATCATAAAAATTCCTCAAGGTGAACTAACTTCCTTTGCTTGCTTGTAAATTCATAGCTCTTTAATGAGGATAATTGGCTGAGTTCTGTAGTCTCAAGTTCATGAGTTCATGGGAAAACCTTCCTGGATCCAGAAGGAAGTGAGTACTGCCTCCCACTGACCTTAGGACCAAGGGAAGTCTACCAAACTACCTCCATTCTTTCAGCTGGCTGCAGGCT-TTGCCTCCA-------CTGGGATCTTTTTCAGG-GTCTGGGTTTGAAGCCTGGAACCCTTGGGCTTTTCAGACTGTTCAAAGTTTGGTCTGATAGTCTtttatttatgta-tttttat i canFam3.chr9 C 0 I 136 a score=441299.000000 s hg38.chr17_JH159146v1_alt 74136 138 + 278131 AAAA-CTTCTATCCCTTCC---TT-TCGGATCATAGAATATATATGCCCTTT-----AT-ATGGCCAGCTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTAGCTCATA-TGCATC----TTTTTTTTTTT s panTro4.chr17 66194447 138 - 82630442 AAAA-CTTCTCTCCCTTCC---TT-TCGGATCATAGAATATATATGCCCTTT-----AT-ATGGCCAGCTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTAGCTCATA-TGCATC----TTTTTTTCTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24724016 138 - 73212453 AAAA-CTTCTATCCCTTCC---TT-TCGGATCATAGAATATATATGCCCTTT-----AT-ATGGCCAGCTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTATCTCATA-TGCATC----TTTTTTTTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47945183 138 - 81552678 AAAA-CTTCTATCCCTTCC---TT-TCGGATCATAGAATATATATGCCCTTT-----AT-ATGGCCAGCTGTTGTTATTTCCTGTGGTGGCCAGAAATATCAGATCGAA-AGTCTAGACATCTCTATCTCATA-TGCATC----ttttttttttt i nomLeu3.chr19 C 0 I 18 s rheMac3.chr16 53055445 136 + 80904711 AAAA-CTTCTATCCCTTCC---TT-TCAGGTCATAGAATATACATGCCCTTT-----AT-ATGGCCAACTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTATCTCTTA-TGCATC------TTTTTTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52578329 138 + 80997621 AAAA-CTTCTATCCCTTCC---TT-TCAGGTCATAGAATATACATGCGCTTT-----AT-ATGGCCAACTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTATCTCTTA-TGCATC----ttttttttttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47623404 142 + 74645514 aaaa-cttctaTCCCTTCC---TT-TCAGGTCATAGAATATACATGCCCTTT-----AT-ATGGCCAACTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTCTATCTctta-tgcatcttttttttttttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9891501 133 - 75148670 AAAA-CTTCTATCCCTTCC---TT-TCAGGTCATAGAATATACATGTCCTTT-----AC-ATGGCCAGCTGTTGTTATTTCCTGGGGTGGCCAGAAATATCAGATTGAA-AGTCTAGACATCTGTATCTCTTA-TGCATC---------TTTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112735761 126 + 159171411 AAAA-CTTCTATTACTTCT---TT-TTGGGTCATAGAATATATAT------------------GCCAGCTGTTGTTATTTCCTGGGGTGGCCAGAAATATCACATTGAA-AGTCCAGACATCTGAATCTTGTA-TGCACA----GTTTTTTTTTT i calJac3.chr5 C 0 I 11 s mm10.chr11 99480422 129 + 122082543 AAAACCCTCTGACGCTCCCTGTTT-TTGGACCAGAGGACACACATGGACTTT-----GTGATGGCTAGCTATGGTTTT----AGGAATGGTCAGAAATATCAGTTTGAT-AATCTTGAC-------TCTCTTAGTGAATC----TATCTCT---- i mm10.chr11 C 0 C 0 s canFam3.chr9 39308944 136 - 61074082 AAAA-ATTCTAAAACTTTT---TTCTTGGGTCATAGAATGCATGTGTCCTTTTTTCCAC-CCAGACAACTATTGTCATTTCCCAAGTTGCTCAGAAATGCCACATTGAAGAATCCAGACTTCTCAACCTCTTA-GGAATC----TT--------- i canFam3.chr9 I 136 C 0 a score=7180.000000 s hg38.chr17_JH159146v1_alt 74274 10 + 278131 TTCTCTTTTG s panTro4.chr17 66194585 8 - 82630442 --CTCTTTTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24724154 9 - 73212453 -TTTTTTTTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47945339 10 - 81552678 tttttttttG i nomLeu3.chr19 I 18 C 0 s rheMac3.chr16 53055581 9 + 80904711 -TTTTTTTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52578467 9 + 80997621 -tttttttGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47623546 9 + 74645514 -ttttttttg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9891634 9 - 75148670 -TTTTTTTGG i chlSab2.chr16 C 0 C 0 s mm10.chr11 99480551 1 + 122082543 ---------G i mm10.chr11 C 0 C 0 s canFam3.chr9 39309080 6 - 61074082 ----CTTATA i canFam3.chr9 C 0 C 0 e calJac3.chr5 112735887 11 + 159171411 I a score=2805873.000000 s hg38.chr17_JH159146v1_alt 74284 744 + 278131 CTGGTGGACTA-ACACATTCCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGTGTGCATTCCTACTGG-GAAACACAGTGGCCAAATCC-TTTTGAATTGTTTC----CTTCTAGAGACTTTAAC-------TC----TT-----CTGACTGCAAATCTTAGTGTCCTGTGAGTATTAGTTGATTAATT-ATACTTGCTGCTTAG------TGAAATACAGCCAGCTATAGGTATCTTCTGGAGTAGCTCAACAC-AACTTTTCTCTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGAGGTCCCTCGCATGCTCCTCTCGTGCCAGCCTTTGC---CTTACCCTTCACTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCATTGTTCTGCCGCTCCAGTTCATGGCGTAGCTGCGTCAGTTCCTCCTCATAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCGGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----CTTCTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGATTGTTGAGTACTTAGCAGATGTCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGATGAGAAGTAGGCTGACTTACAGGTTTGGGACTTGGG--CAGT--CAGGAGTTGAGCA----------GTGT s panTro4.chr17 66194593 744 - 82630442 CTGGTGGACTA-ACACATTCCCCTTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTATGTGCATTCCTACTGG-GAAACACAGTGGCCAAATCC-TTTTGAATTGTTTC----CTTCTAGAGACTTTAAC-------TC----TT-----CTGACTGCAAATCTTAGTGTCCTGTGAGTATTAGTTGATTAATT-ATACTTGCTGCTTAG------TGAAATACAACCAGCTATAGGTATCTTCTAGAGTAGCTCAACAC-AACTTTTCTCTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGAGGTCCCTCGCATGCTCCTCTCGTGCCAGCCTTTGC---CTTACCCTTCACTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCGTTGTTCTGCCGCTCCAGTTCGTGGCGTAGCTGCATCAGTTCCTCCTCATAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCGGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----ATTTTGTTAATTAACTGATGGCTTGATTGAGTCAATAATAGGTGATTGTTGAGTACTTAGCAGATGTCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGATGAGAAGTAGGCTGACTTACAGGCTTGGGACTTGGG--CAGT--CAGGAGTTGAGCA----------GTGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24724163 744 - 73212453 CTGGTAGACTA-ACACATTCCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGTGTGCATTTCTACTGG-GAAACACAGTGGCCAAATCC-TTTTGAATTGTTTC----CTTCTAGAGACTTTAAC-------TC----TT-----CTGACTGCAAATCTTAGTGTCCTGTGAGTATTATTTGATTAATT-ATACTTGCTGCTTAG------TGAAATACAACCGGCTATAGGTATCTTCTGGAGTAGCTCAACAC-AACTTTTCTTTTGCCAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGTTGGATGCCCCTCGCATGCTCCTCTTGTGCCAGCCTTTGC---CTTACCCTTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCATTGTTCTGCCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCTTCCTCATAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCGGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATAAT----CTTTTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGATTGTTGAGTACTTAGCAGATGTCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGATGAGAAGTAGGCTGACTTACAGGTTTGGGACTTAGG--CAGT--CAGGAGTTGAGCA----------GCGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47945349 743 - 81552678 CTGGTGGACTA-ACACATTTCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGTGTACATTCCTACTGG-GAAACACAGTGGCCAAATCC-TTTTGAATTGTTTC----CTTCTGGAGACTTTAAC-------TC----TT-----CTGACTGCAAATCTTAGTGTCCTGTGAGTATTAGTTGATTAATT-ATACTTGCTGCTTAG------TGAAATACAACTGGCTATAGGTATCTTCTGGAGCAGCTCAACAC-AACTTTTCTTTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGATGCCCCTCGCATGCTCCTCTTGTGCCAGCCTTTGC---CTTACCCGTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAAGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCGTTGTTCTGCCGCTCCAGGTCGTGGCGCAGCTGCATCAGTTCCTCCTCATAATGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCGGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----CTTTTGTTAATTAACTGAT-GCTTGATTGAGTCAATAACAGGTGATTGTTGAGTATTTAGCAGATGTCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGGCACAAAGATGAGAAGTAGGCTGACTTACAGGTTTGGGACTTGGG--CAGT--CAGGAGTTGAGCA----------GTGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53055590 744 + 80904711 CTAGTGGACTA-ACACATTCCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGGGTGCATTCCTACTGG-GAAACACGATGGCCAAAACC-TTTTGAATTGTTTC----CTTCTAGAGACCTTAAC-------TC----TT-----CTGACTGCAAATCTTAGGGTCCTGTGAGTATTAGTTGATTAATT-ACACTTGCTGCTTAG------TGAAATACAACTGACTATAGGTATCTCCTGGAGAAGCTCAACAC-AGCTTTTCTTTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGATGCCTCTTGCATCCTCCTGTCATGCCAGCCTTTGC---CTTACCCTTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCGTTGTTCTGCCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCCTCCTCGTAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCAGATAACAGGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----CTTTTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGACTGTTGAGTACTTAGCAGATGCCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGGTGAGAAGTAGGCTGACTTACAGGTTTGGGACTTGGG--CAGT--CAGGAGTTGAGTG----------ACGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52578476 744 + 80997621 CTAGTGGACTA-ACACATTCCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGGGTGCATTCCTACTGG-GAAACACGATGGCCAAAACC-TTTTGAATTGTTTC----CTTCTAGAGACCTTAAC-------TC----TT-----CTGACTGCAAATCTTAGGGTCCTGTGAGTATTAGTTGATTAATT-ACACTTGCTGCTTAG------TGAAATACAACTGACTATAGGTATCTCCTGGAGAAGCTCAACAC-AGCTTTTCTTTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGATGCCTCTTGCATGCTCCTGTCATGCCAGCCTTTGC---CTTACCCTTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCGTTGTTCTGCCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCCTCCTCGTAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCAGATAACAAGTTTTCCAAAGTAGATTTCTGAAAGAGGAAATGAT----CTTTTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGACTGTTGAGTACTTAGCAGATGCCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGGTGAGAAGTAGGCTGACTTACAGGTTTGGGACTTGGG--CAGT--CAGGAGTTGAGTG----------ACGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47623555 745 + 74645514 ctagtggACTA-ACACATTCCccctgcct------------------tctttttttc------tggagccAAAATTGGGTGCATTCCTACTGG-GAAACACGATGGCCAAAACC-TTTTGAATTGTTTC----CTTCTAGAGACCTTAAC-------TC----TT-----CTGACTGTAAATCTTAGGGTCCTGTGAGTATTAGCTGATTAATT-ACACTTGCTGCTTAG------TGAAATACAACTGACTATAGGTATCTTCTGGAGAAGCTCAACAC-AGCTTTTCTTTTGCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGATGCCTCTTGCATGCTCCTGTCATGCCAGCCTTTGC---CTTACCCTTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCGTTGTTCTGCCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCCTCCTCGTAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCAGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----CTTTTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGACTGTTGAGTACTTAGCAGATGCCGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGACACCAAGGTGAGAAGTAGGCTAACTTACAGGTTTCGGACTTGGG--CAGT--CAGGAGTTGAGTG----------ACGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9891643 744 - 75148670 CTAGTGGACTA-ACACATTCCCCCTGCCT------------------TCTTTTTTT-------TGGAGCCAAAATTGGGTGCATTCCTACTGG-GAAACACGATGGCCAAAACC-TTTTGAATTGTTTC----CTTCTAGAGACCTTAAC-------TC----TT-----CTGACTGCAAATCTTAGTGTCCTGTGAGTATTAGTTGATTAATT-ACACTTGCTGCTTAG------TGAAATCCAACTGACTATAGGTATCTTCTGGAGAAGCTCAACAC-AACTTTTCTTTTTCTAGAGTGACTCTTGCTAACAGAACCCAAAGATGCACACATATACCCACAGGAGCTGGATGCCTCTTGCATGCTCCTGTCATGCCAGCCTTTGC---CTTACCCTTCGCTCTCTCCCTCCAGGAGCCGTCGGTACGTGGTGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTATTCATTGTTCTGCCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCCTCCTCGTAGTGGGAGATGATCTCTTGCATGTCCTGGAGCTTGGAGGAGTACCGAGACTGGGTCTCAGATAACATGTTTTCCAAAGCAGATTTCTGAAAGAGGAAATGAT----CTTGTGTTAATTAACTGATGGCTTGATTGAGTCAATAACAGGTGACTGTTGAGTACTTAGCAGATGCTGACCAGTTGGCTAGGTGTCTTGGTAGCTGCTGAGGATACCAAGGTGAGAAGTAGGCTGACTTATAGGTTTGGGACTTGGG--CAGT--CAGGAGTTGAGTG----------ATGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112735898 736 + 159171411 CTGGTGGACTA-ACACATTCCCCTTGGCT------------------TTTTTTTTTCTTTTTTTGGAGCCAAAATTGTGTGCATTCCAGCTGG-GAAACACATTGGCCAAAATC-TTTCTAATTGTTTC----CTGCTAGAGACCTTAGC-------TT----TT-----CTGATTGCAAATCCTAGTGTCCTGTGAGTATTAGCTGATTAATT-ATACTTGCTGCTTAG------TGAAATACAACCGGCTATAGGTATCTTCTGCAGAAACTCAACAC-AACTTTTCTTTTGCTAGAGTGACT----------AAACCCAGAGATGCACACATACGCCCATAGCAGCTGGATGCTCGTCCCATGCTCCTCTCATGCCAGCCTTTGCCTTCTTACCCTTCGCTCTCTCCCTCCAGGAGCTGTCGGTATGTGGTAATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACTTGGTACTCATTGTTCTGTCGCTCCAGGTCGTGGCGTAGCTGCATCAGTTCCTCCTCGTAGTGGGAGATGATGTCTTGCATGTCCTGGAGCTTGCAGGAGTACCGAGACTGGGTCTCAGATAACATGTTTTCCAAAGCAGATTTCTGAAACAGGAAATGAT----CTTTTGTTAATTGACTGATGGCTGGATTGGGTCAATGACAGGTTCTTGTTGAGTACTTAGCAGATGTCGACCAGTTGGTTAGGTGTCTTTGTAGCTGCTGAGGACACCAAGATGAGAAGTAGGCTGACTTACAGGTTTGGGACTTG------------GGATTTGAGCA----------GTGT i calJac3.chr5 I 11 I 297 s mm10.chr11 99480552 725 + 122082543 CTGTTAGTCTACAAACCTTTCCCCTGCCT--------------TTGGTTTTTATTT-------TCGAACTCAGCTTGAGTGCACT-CTACTGGAGAAACACAACAGACATACCTGTTCTTCATTCCCCCATCTCTGCTTTGAACCATTAC-------TAAGGGCT-----CTGAGAGCAAACCTTCACATCCAGGGAG------------AACC-ACCCTTTCAGCTCAGACTTAATGAAA---AGCCTGATACAGGAATCTTCCAGAGAAAATTAATC----TTTCTTTCTCTCTACATTCACCATGGCTGA--GACCCTGGGGACACATCCATCCATGCACAGGAGTGTCACGTCCA--GCACGTTCTAGCTGCTCCAGC---------CTCACCCTTCAGTGTCTCCCTCCAGGAGCCGGCGGTAGGTGGCGATTTCCTTCTCCAGGTGGGTTTTGATGCCCAGCAGCACCTTGTGTTCATTGTTCTGACGCTCCAGGTCTTGGCGGAGCTGAATCAGCTCTTCTTCGTAGTGGGAGATGATCTGCTGCATGTCCTGGAGACGGCAGGAGTATCGAGCCCGGGTCTCTGTCAGCATGTTTTCCAAAGCGGTTTTCTGAAAGACGGAACGATAGCCCACTCACTAGTCTACTAGGGGT--------GTCGGCAGCAGG-GCTTGCGCAG-AGTTAACTTACTCTGACCTCTCCGCAAGGCATTGTGGGTGATGCTGGGGCGA-------------------GACTTACGGGGTTGGGACTTGGGGTCAGTGCTGGGTCTTTGGCAAGAAGCCATTGTGT i mm10.chr11 C 0 I 2 s canFam3.chr9 39309086 760 - 61074082 CTGTCAGACTA-AAATATCCTTCCAACCTTCTGGGCTTTTTGTTTTGTTTTGTTTT-------TGGAGCCAAAATTGTATGCATTCCCAGTGG-GAAATACTATAGCCAAG-CC-TTCCTAGTTGTTTC----TTTTTGGAGATTTTAACATATTAATT----TTAACAATTGACTTCAAATCTTAGTACCCTGGGAA---TAGCTGATTAATTCATACTTGCTATTTAA------TGAGATACAACCTGATTTAAATATC--CAGAAGAAATTCAACATAAACTTTTCTTTCTCTGGAGTGATGATTGCTAACAGAACTCTGAGGTATATGAAGGCACACACAAAAACTCAATGT-TATTTTGTCCTCCTCCCCTGCCAGCCTTTGC---CTTACCCCTCACTCTCTCCCTCCAGAAGCTGCTGGTAGGTGGCGATTTCCTTCTCTAGGTGGGTCTTGATGCCCAGGAGGACCTTGTATTCATTGTGCTGACGCTCCAGGTCATGGCGCAGCTGCCTCAATTCATCCTCATAGTGGGAGATGATCTGTTGCATGTCCTGGAGCTGGCAGGAGTACCGAGACTGGGTCTCTGATAACATGTTCTCTAAAGCAGATTTCTGAAAGAGGATATGATGTTTCTTCCATTAATTGGCTGATAGCTTGGCTGCTTCAATAATGTAGGCTTATTGAGTAGTTGGATTATACTGATCACTC------------TGGTGGCTTCTG-GGATGCAAAAGTGGGCACCTGACTGACTCACAGGTTTGGGGCTTGGG--CAGT--GAGGAGTGCACGA----------AAGT i canFam3.chr9 C 0 C 0 a score=847307.000000 s hg38.chr17_JH159146v1_alt 75028 240 + 278131 TAGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCCTTGCTCTGAACTGTTGTTTAACTC------CTTTCATTTTATCTTTGACCTGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGACTGCTATCTCTTTGTATCTTCGGAGAAGGGTCTCAATtagggatgccagataaaatagagaacatctagtt----------aaatttgaatttcagatgagtaatgagtaatttttt-agtgtaactatgtcca-aaatattgctccag s panTro4.chr17 66195337 240 - 82630442 TAGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCCTTGCTCTGAACTGTTGTTTAACTC------CTTTCATTTTATCTTTGACCTGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGACTGCTATCTCTTTGTATCTTCGGAGAAGGGTCTCAATtagggatgccagataaaatagagaacatctagtt----------aaatttgaatttcagatgagtaatgagtaatttttt-agtgtaactatgtcca-aaatattgctccag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24724907 240 - 73212453 TAGGACTTTTGA-------GGTCCAT---------------------------------------------------------------------------------------TGCTTTGCTCTGAACTGTTTTTTAACTC------GTTTCATTTTATCTTTGACCAGACTGAAAACTCCCAAAGAGCGACAGCAACTGGGACTGCTATCTCTTTATATCTTCGGAGAAGGGTCTCAATtagggatgccagataaaatagagaacatctagtt----------aaatttgaatttcacatgagtaatgagtaatttttt-agtgtaactatgtcca-aaatattgctccag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47946092 240 - 81552678 TAGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCCTTGCTCTGAACTGTTCTTTAACTC------CTTTCATTTTATCTTTGACCAGATTGAAAACTCCCAAAGAGCGACAGCAACTGAGACTGCTAACTCTTTGCATCTTCAGAGAAGGGTTTCAATtagggatgccagataaaatagagaacatctagtt----------aaatttgaatttcatatgagtaatgagtaatttttt-agtgtaattatgtcca-aaatattgctccag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53056334 240 + 80904711 TGGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCTTTGCTCTGAACTGTTCTTTAACTC------CTTACATTTTATCTTTGACCAGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGGCTGCTATCTCTTTGTATCTTTGGAGAAGGGTCTCGATtagggatgccagataaaatagagaacgtctagtt----------aaatttgaatttcagatgagcaatgagtaatttttt-agtgtaactatgtcca-aaatattgctccac i rheMac3.chr16 C 0 I 27 s macFas5.chr16 52579220 239 + 80997621 TGGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCTTTGCTCTGAACTGTTCTTTAACTC------CTTACATTTTATCTTTGACCAGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGGCTGCTATCTCTTTGTATCTTTGGAGAAGGGTCTCGATtagggatgccagataaaatagagaacgtctagtt----------aaatttgaatttcagatgagcaatgagtaatttttt-agtgtaacgatgtcca-aaatattgctcca- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47624300 240 + 74645514 TGGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCTTTGCTCTGAACTGTTCTTTAACTC------CTTACATTTTATCTTTGACCAGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGACTGCTATCTCTTTGTATCTTCGGAGAAGGGTCTCGATTAGGGATGCCAGATAAAATAGAGAAcgtccagtt----------aaatttgaatttcagatgagcAATGAGTAATTTTTT-AGTGTAACTATGTCCA-AAATATTGCTCCAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9892387 240 - 75148670 TGGGACTTCTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCTTTGCTGTGAACTGTTCTTTAACTC------CTTACATTTTATCTTTGACCAGATTGAAAACTCCCAAAGAGCGACAGCAACTGGGACTGCTATCTCTTTGTATCTTCGGAGAAGGGTCTCAATtagggatgccagataaaatagagaacgtctagtt----------aaatttgaatttcagatgagcaatgagtaatttttt-agtgtaactatgtcca-aaatattgctccac i chlSab2.chr16 C 0 I 26 s calJac3.chr5 112736931 236 + 159171411 TGGGACTTTTGA-------AGTCCAT---------------------------------------------------------------------------------------TGCCTTGCCCTGAGCTGTTCTTTGATAC------CTTACATTATATTTTTGATCCAATGGTAAACTCTC----AGGGACAGCAACTAGGACGGTTATCTCTTTGTATCTTTGGAGAAAGGTCTCTATtagggatgccagataaaatagagaatgtctagtt----------aaatttgaatttcagatgagcaatgagtaatttttt-agtgtgattgtgtcca-aaatattgctccag i calJac3.chr5 I 297 C 0 s mm10.chr11 99481279 281 + 122082543 GGGAGCTCTTGACAACGCCACTGCATCCCCTAGCTTTGATG--------------------------------GTT------------TACACACTGGGGATCAGACAGGAGCTGCCTGGCTTTGAACTATTCCTGA--TG------TTTCTATTTAATCTCTGGTTAGGTGGAGAATTCCAGGAGGGAGA--------GAGGCTGC-----------ATCCTCAGAGAGTGGTCTGATGGAGTGATGCCATGAACAATAGAGAATGCGTGGTTTTGAGTGATCACACTCGAATGCAAGATGAGCAATGAGTAACTTTTTAAGGATAAACATGTTCACAAGCATTATCACAC i mm10.chr11 I 2 C 0 s canFam3.chr9 39309846 328 - 61074082 CAGAATTTTTGA-------AGCCCATTTCTTTGTGTTGGGGAGCTCTTGGCAGCTTTGCTATGTTCCTGCAGTGTTTATTGAGTATGCTACTCATTTGGGGTTGGGCATACGCTGCCTTGCTCTGATTTATTCTTTACCTCCTCATGCTTATATTTTATCTGTGGCCATATAGAAAACTCCC-GGGAGAAATAGAAACTGGGACAGCTGTCTCTTTGTATCTTCAGAGAAGGGTCTCAAGtagggatgctggataaaatag----cacctagct----------aaatttgaatttcagatgagcaatgagtaatttatt-agtacaagtatgtcct-aaaaattgcctcaa i canFam3.chr9 C 0 C 0 a score=11536.000000 s hg38.chr17_JH159146v1_alt 75268 28 + 278131 tattgcatgggac------atgc---------------------aaaaaaaa-----------ttg s panTro4.chr17 66195577 28 - 82630442 tattgcatgggac------atgc---------------------aaaaaaaa-----------ttg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24725147 31 - 73212453 tattgcatgggac------atgcaaa------------------aaaaaaaa-----------ttg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47946332 28 - 81552678 tattgcatgggac------atgc---------------------aaaaaaaa-----------ttg i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52579459 27 + 80997621 -cctgcgtatact------aaaa---------------------aaataaaa-----------ttg i macFas5.chr16 C 0 I 1 s papAnu2.chr16 47624540 28 + 74645514 --CTGcgtatacta----aaaaa---------------------aaaaaaaa-----------ttg i papAnu2.chr16 C 0 I 1 s calJac3.chr5 112737167 34 + 159171411 tattgcatgggacatgtgtatac---------------------taaaaaaa-----------ttg i calJac3.chr5 C 0 C 0 s mm10.chr11 99481560 35 + 122082543 CATCACAACAGAC------ATTCCCATAT-----------GCTTAAAAATAA-------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 39310174 60 - 61074082 tattgcacgggac------atacttatactaaaaacaaaaaaacaaaaaaaaccccacaccctttg i canFam3.chr9 C 0 C 0 e chlSab2.chr16 9892627 26 - 75148670 I e rheMac3.chr16 53056574 27 + 80904711 I a score=1247662.000000 s hg38.chr17_JH159146v1_alt 75296 352 + 278131 ctttttatttgaaattccaactaaactgagtattctatattttaatttggtaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGACGATGGTAAAAAAAAAAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGCCAAATGAAGTTTCTGGGCTAG----AATATGGAGGATTGAGTTCAAGTCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGCGCATAATTTTAACCTtaaagaga-atctcctaactgtgctggatactctccctttatcgtggctgc-taattttca--gggggc---cgttcatgctgcctggcggttaaagcacatttccctggt--cagcca s panTro4.chr17 66195605 350 - 82630442 ctttttatttgaaattccaactaaactgagtattctatattttaatttggtaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGACGATGGT--AAAAAAAAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGCCAAATGAGGTTTCTGGGCTAG----AATATGGAGGATTGAGTTCAAGTCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGCGCATAATTTTAATCTtaaagaga-atctcataactgtgctggatactctccctttatcgtggctgc-taattttca--gggggc---cgttcatgctgcctggcggttaaagcacatttccctggt--cagcca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24725178 350 - 73212453 ctttttatttgaaattccaactaaactgagtgtcctatgttttaatttggtaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGACGATGGT--AAAAAAAAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGCCATATGAAGTCTCTGGGCTAG----AATATGGAGGATTGAATTCAAGTCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGTGCATAATTTTAATCTtaaagaga-atctcataagtgtgctggatactctccctttatcgtggctgc-taattttca--gggggc---cgttcatgctgcctggcggttaaagcacatttccctggt--cagcca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47946360 348 - 81552678 ctttttatttgaaattccaactaaactgagtgtcctatattttaatttggtaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGACGATGGT----AAAAAAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGCCAAATGAAGTTTCTGGGCTAG----AATATGGAGGATTGAGTTCAAGTCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGTGCATAATTTTAACCTtaaagaga-atctcgtaactgtgctggatactctccctttatcgtggctgc-taattttca--gggggc---cgttcacgctgccaggcggttaaagcacatttccctggt--cAGCCA i nomLeu3.chr19 C 0 I 100 s rheMac3.chr16 53056601 352 + 80904711 ttttttatttgaaattccaacgaaactgagtgtcctatattttaatttggcaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGATGATGGT--AAAAAAGAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGTCAAATGAAGTTTCTGGGCTAG----AATATGGAGCACTGAGTTCAAGGCCCACTTCTATTTGCATGTAACACCTGCTTTTCTGAAGTGCATAGTTTTAACCTtaaagaga-atctcataactgtgctgaatactctccctttatcgtggctgc-taattttcagggggggc---cgttcatgctccctggtggttagagcacatttccctggt--cagcca i rheMac3.chr16 I 27 C 0 s macFas5.chr16 52579487 352 + 80997621 ttttttatttgaaattccaacgaaactgagtgtcctatattttaatttggcaaatctggcaaccctaGTCTCAAGCAATGCTTTTTGATTATGATGATGGT--AAAAAAGAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGTCAAATGAAGTTTCTGGGCTAG----AATATGGAGCACTGAGTTCAAGGCCCACTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGTGCATAATTTTAACCTtaaagaga-atctcataactgtgctgaatactctccctttatcgtggctgc-taattttcagggggggc---cgttcatgctccctggtggttagagcacatttccctggt--cagcca i macFas5.chr16 I 1 C 0 s papAnu2.chr16 47624569 351 + 74645514 ttttttatttgaaattccaACTAAACTGAGTGTCCTATATTTTAATTTggtaaatctggcaaccctagtCTCAAGCAATGCTTTTTGATTATCATGATggt--aaaaaagaaatgtca--ttttttgaggaaattcTAACAGCTGCCAAATGAAGTTTCTGGGCTAG----AATATGGAGCACTGAGTTCAAGGCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGTGCATAATTTTAACCTTAAAGAGA-ATCTCATAACTGTGCTGAATACTCTCCCTTTATCGTGGCTGC-TAATTTTCA-GGGGGGC---CGTTCATGCTCCCTGGTGGTTAGAGCACATTTCCCTGGT--CAGCCA i papAnu2.chr16 I 1 C 0 s chlSab2.chr16 9892653 351 - 75148670 ttttttatttgaaattccaactaaactgagtgtcctatattttaatttggtaaatctggcatccctaGTCTCAAGCAATGCTTTTTGATTATGATGATGGT--AAAAAAGAAATGTCA--TTTTTTGAGGAAATTCTAACAGCTGCCAAATGAAGTTTCTGAACTAG----AATATGGAGCACTGAGTTCAAGGCCCAGTTCTGTTTGCATGTAACACCTGCTTTTCTGAAGTGCATAATTTTAACCTtaaagaga-atctcataactgtgctgaatactctccctttatcgtggctgc-taattttca-ggggggc---cgttcatgctccctggtggttagagcacatttccctggt--cggcca i chlSab2.chr16 I 26 C 0 s calJac3.chr5 112737201 352 + 159171411 ttttttatatgaaattccaactaaaccgagtgtcctatattttaatttggtaaatctggcaaccctaGTCTCAAACAATGCTTTTTGATTATGACAATGGT--TAAAAAAAATGGTCATTTTTTTTGAGGAAATTCTAACAGCTGCTAAATGAAGTTTCTGGGCTAG----GAAATGGAGGATTGGGTTCAAGCCCCTGTTCTGTTTGCATGTAACACCTGCTTTTATGATGTGCATAATTTTAACCTtaaagaga-atctcataactgtgctggatactcccactttattgtggctac-taattttca--gtgggc---tgttcatgctgcctggtggttaaagcacatttccctggt--cagtca i calJac3.chr5 C 0 C 0 s mm10.chr11 99481595 331 + 122082543 ------CTTAGATGTTGATCTTAAACCAAGTGTCCAG-----TCATTTGGTAAATATAG---TCTAGGTTGTAAGTGATAGTCTCTGATATCCA-----AT--AGCGACAGGCTGCCA--TTTTTTGAGGAAAATTCCGAAACTTTAAAACAAAGCATCTCAGGTAGGGTTGATATCAAGGGTTGATATC----CCTCACTCTGTCCGGACTCACCACCTGCTTTTCTGTGG-----AACTTTAATTTTAAggagataaaccataatcatattagctacccacccttga--atggctgcttcattttca--atgggctctcattaacactgtccggctatcaaaccatattcctctgattgcaggca i mm10.chr11 C 0 C 0 s canFam3.chr9 39310234 330 - 61074082 ctttgtatttgaaattcaaatttaactggatggcctatatttcaatttggtcaatctagcatccataGTCCCAAGCAATGCTCATTGATTATGACAATGAT-----AATGAATTGTCA---TTATTGAGGAAGTCCTAAAAGCTGCACAATGAAGTTGCCACACTAG----GATACGGAGAACTGAGATCAAGACCCTGTTCTCTTTGGATTTCCCACCCACTTTTCTGGAGTGTGTAACTTAAATCTTCAGgaga-aactcgcaactatgctggataatctcatttgcttatgg-tgt-taactttca--cagggc---acttaatgctgcctggc------------ctgcactcat--cac--- i canFam3.chr9 C 0 C 0 a score=1965533.000000 s hg38.chr17_JH159146v1_alt 75648 730 + 278131 gtctcctactctcccaggaggttattttgttccctctcctctgtcctt-------------gccatccttcctcggagtccatggcctcgcttcctaattttgttgatgaaatgaaagcaatcgggagagaccgcccac-tg-ctccctacattgctcccaggcacatacttgaatctgcatctgggtgctggct-tccctctgttcttttgtgtgagctgtctgtgctccagtcatctcggcagttgcccgccttcttgcgttatcaatattctct------ctggattattcccaccagc-------tttcaaatagaataatttttcctaccttaaaatatatctttcttaaacccatatctaccttcagctatcatccaatttctctgctctccttcagctacagcaaagctcctcaaagag------ttgtctatgcctgctgttcc-------TCTTGAGACCCCTCCAAGGTAGCCTACAAAGCCCTACACTGTCTGGTTCTGTTGGGACTCCGCGGCCTCACCCTGTCTTCCTCCCTCTTCccctcccttcccctcctcttctctcctttc---ttcttcccttcattcactcactgtagccacatggacttccctgctgctcctccaactcatcagacacacttgtgccttgtcgcttttgcacttgctgttccctcctc-ttggaaca--catcccatcaccacatcaagcacctccttacctcttt---gctcactgccactctaacaggaaaacctttcctgaccacct s panTro4.chr17 66195955 730 - 82630442 gtctcctactctcccaggaggttattttgttccctctcctctgtcctt-------------gccatccttcctcggagtccatggcctcgcttcctaattttgttgatgaaatgaaagcaatcgggagagatcgcccac-tg-ctccctacattgctcccaggcacatgcttgaatctgcatctgggtgctggct-tccctctgttcttttgtgtgagctgtctgtgctccagtcatctcggcagttgcccgccttcttgcgttatcaatattctct------ctggattattcccaccagc-------tttcaaatagaataatttctcctaccttaaaatgtatctttcttaaacccatatctaccttcagctatcatccaatttctctgctctccttcagctacagcaaagctcctcaaagag------ttgtctatgcctgctgttcc-------TCTTGAGCCCCCTCCAAGGTAGCCTACAAAGCCCTACACTGTCTGGTTCTGTTGGGACTCCGCGGCCTCACCCTGTCTTCCTCCCTCTTCccctcccttcccctcctcttctctcctttc---ttcttcccttcattcactcactgtagccacatggacttccctgctgcccctccaactcatcagacacacttgtgccttgtcgcttttgcacttgctgttccctcctc-ttggaaca--catcccatcaccacatcaagcacctccttacctcttt---gctcactgccactctaacaggaaaacctttcctgaccacct i panTro4.chr17 C 0 M 798 s ponAbe2.chr17 24725528 729 - 73212453 gtctcctactctcccagggtgttattttgttccttctcctctgtcctt-------------gccatccttccttggagtccatggccttgcttcctaatttcgttgatgaaatgaaagcaattgggagagaccgcccac-tg-ctccctacattgctcccaggcacatgcttgaatctgcgtccaggtgctggct-tccctctgttcttttgcgtgagctgtctgtgctccagtcatctcggcagttgccggccttcttgcattatcaacgttctct------ctggattattcccaccagc--------ttcaaatagaataatttctcccaccttaaaatgtatctttcttaaacccatatctaccttcagctatcatccaatttctcttctctccttcagctacagcaaagctcctcaaagag------ttttctatgcctgctgttcc-------TCTTGAGCCCCCTCCAAGGTAGCCTACAAAGCCCTACACTGTCTGGCTCTGTTGGGACCCCACAGCCTCACCCTCTTTTCCTCCCTCTTCccctcccttcccctcctcttctctcctttc---ttcttcccttctttcactcactgtagccacatggacttccctgctgctcctccaactcatcagacacacttgtgccttgccacttttgcacttgctgttccctcctc-ctggaaca--cgtaccattactacatcaagcacccccttacctcttt---gctcactgccactctaacaggaaaacctttcctgaccacct i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53056953 731 + 80904711 ctctcctactctcccagggggttactttgttccctctcctctgtcctt-------------cccatccttcctctgagtccatggcctcgcttcctaatttcattgatgaaacgaaagcaatcgggagagaccgcccac-tg-ctcccgccattgcgcccacgcacatgcttgaatccgcgtgcgggtgctggct-tccctgtgttcttttgcctgagctgtctgtgctccagtcatctcggcagttgccggcctccttgcatcatcagtgttctcctctctactggattattcccaccagc-------tttcaaatagaataatttctcctaccttaaaatgtatctttcttaaacccgtatctaccttcagctatcgtccaatttctctgctctccttcagctac-----ttctcctcaaagag------tggtctatacctgctgttcc-------tcttgaattccctccAAGGTAGCCTACAAAGCCCTGCACAGTCTGGCTCTGTTGGGATCCCATGGCCTCACCCTCTCTTCCTCCCTCTTCccctcccttcccctcctgttccgtcctttc---ttcttcccgtcgttcattcactgcagccacatggacttccctgctgctcctccaactcatcagacacacttgggccttgtcgcttttgcacttgctgttccttcctc-ctggaaca--catcccatcaccacatcaagcacctccgtacctcttt---gctcactgccactctaacaggaaaacctttcctgaccccct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52579839 731 + 80997621 ctctcctactctcccagggggttattttgttccctctcctctgtcctt-------------cccatccttcctctgagtccatggcctcgcttcctaatttcattgatgaaacgaaagcaatcgggagagacctcccac-tg-ctcccgccattgcgcccacgcacatgcttgaatccgcgtgcgggtgctggct-tccctgtgttcttttgcctgagctgtctgtgctccAGTCATCTCGGCAGTTGCCGGCctccttgcatcatcagtgttctcctctctactggattattcccaccagc-------tttcaaatagaataattcctcctaccttaaaatgtatctttcttaaacccgtatctaccttcagctatcgtccaatttctctgctctccttcagctac-----ttctcctcaaagag------tggtctatacctgctgttcc-------tcttgaattccctccAAGGTAGCCTACAAAGCCCTGCACAGTCTGGCTCTGTTGGGATCCCATGGCCTCACCCTctcttcctccctcttcccctcccttcccctcctgttccGTCCTTTC---Ttcttcccgtcgttcattcactgcagccacatggacttccctgctgctcctccaactcatcagacacacttgggccttgtcgcttttgcacttgctgttccttcctc-ctggaaca--catcccatcaccacatcaagcacctccgtacctcttt---gctcactgccactctaacaggaaaacctttcctgaccccct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47624920 731 + 74645514 CTCTCCTACTCTCCCAGGCGGTTATTTTGTTCCCTCTCCTCTGTCCTT-------------CCCATCCTTCCTCTGAGTCCATGGCCTCGCTTCCTAATTTCATTGATGAAACGAAAGCAATCGGGAGAGACCGCCCAC-TG-CTCCCGCCATTGCGCCCACGCACATGCTTGAATCTGCGTGCGAGTGCTGGCT-TCCTTGTGTTCTTTTGCCTGAGCTGTCTGTGCTCCAGTCATCTCGGCAGTTGCCGGCCTCCTTGCATCATCAGTGTTCTCCTCTCTACTGGATTATTCCCATCAGC-------TTTCAAATAGAATAATTCCTCCTACCTCAAAATGTATCTTTCTGAAACCCGTATCTACCTTCAGCTATCGTCCAATTTCTCTGCTCTCCTTCAGCTAC-----TTCTCCTCAAAGAG------TGGTCTATACCTGCTGTTCC-------TCTTGAATCCCCTCCAAGGTAGCCTACAAAGCCCTgcacagtctggctctgttgggACCCCATGGcctcatcctctcttcctccctcttcccctcccttcccctcctcttctgtcctttc---ttcttcccGTCGTTCATTCACTGCAGCCACATGGACTTCCCTGCTGCTCCTCCAACTCATCAGACACACTTGGGCCTTGTCgcttttgcacttgctgttccttccTC-CTGGAACA--CATCCCATCGCCACATCAAGCACCTCCGTACCTCTTT---GCTCACTGCCACTCTAACAGGGAAACCTTTCCTGACCCCCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9893004 726 - 75148670 ctctcctactctcccagggggttattttgttccctctcctctggcctt-------------cccatccttcctctaaatccatggccttgcttcctaatttcattgatgaaacgaaagcaatcgggagagaccgcccac-tg-ctcccgccattgctcccacgcacatgcttgaatctgcgtgcgggtgctggct-tccttgtgttcttttgcctgagctgtctgtgctccAGTCATCTCGGCAGTTGCCGGCctccttgcatcatcagtgttctcctctctactggattattcccaccagc-------tttcaaatagaataattcctcctaccttaaaatgtatctttcttaaacccatatctgccttcagctatcgtccaatttctctgctctccttcagctacagcaaagctcctcaaagag------tggtctgtacctgctgttcc-------TCTTGAACGCCCTCCAAGgtagcctacaaagtcctgcacagtctggctctgttgggaccccacggcctcaccctctcttgctccct----------cttcccctcctcttctgtcctttc---ttcttcccgtcgttcattcactgcagccacatggacttccctgctgcttctccaactcatcagacacacttgggccttgtcgcttttgcacttgctgttccttcctc-ctggaaca--catcccatcaccacatcaagcacctcctcacctcttt---gctcactgccactctaacaggaaaacctttcctgaccgcct i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112737553 736 + 159171411 ttcttctactctcccaggggactattgcatttcctctcctgtgtcctt-------------cccatccttcctctgagtccatggcctaacttcctaattttattaatgaaatgaaagcaatcaggagagacctcccac-tg-ctcccaccattgctcccacgcatgtgcttgaatctactaccaggtgctggct-tgcctgtgttactatgagtgagctg-ctgtgctccagtcatcttggcagttgctggccttcttgcctcatcaatgttctcctctctgctggattattcccaccagctttcagctttcaaatagaataatttctcctaccttaaaatttctctcttttaaacccatacctaccttcacctatcatcccatttctctgctgtccttcagctacagcagagctcctcagacag------ttgtctatacctgccgttcc-------TCTTGAGCCCCCTCCAAAGTAGCCTGCAAAGCCCTACACAGTCTGGCTCTGTTGTGACCCCACAGCTTCACCCTCTCTTCCTCCTTTTTCccctcccttcccctcctcttctctcctttc---tttttccgtttgttcactcact---tccacacggacttttctgctgctctgataacttatcagacacacttgatacttgttgcttctgca-ttgcag-tccctcttc-ctggaaca--cagcccaccaccgcgtcaagcacctccttacctcttc---gctcattgccactctactaggaaaa-ctttcctgactacct i calJac3.chr5 C 0 C 0 s mm10.chr11 99481926 614 + 122082543 cccccccattctcccagaggtgtgtttccttctttccccctttttctc-------------acccctcatcttcacattcccc-ctctcagcccttagcttcactga-ggaatgaaagccatctggagggaaaaccaac-agtcactcagccttgtttccaatcacttg-----atctatgtccaggtactcAAC-ACC-----TCCGATGACATGAGCCGTC--TGCTGCCATTGCCTCCACCGGCCCCTGCCTC----------CACTGTCCTTT------------------------C-------TTCTAGATGA---------TCCTACCTTGA---TTTTCTGCCTTAAATTTATACTCA----CAGCCAACATCCAGCGTCTCTGATTCCCTGCACAGATGGTAGACTTCCTCAAGGAG------CTGGCTACACTGGTTGTCCCAAAT---TCT------CCCTCCAAGGTAGCCTACAGAACCCCACGCTGTCTGGATCCATTGTGA--------CCTGACCCATTATCcccctctcctccctatgccctctctgcccttctctcctctcccgttctcccctttcttTA---------------------TCTTTGCTGC------AA------GAACACACTTGTGCCTCCTGGCTTTTACATTTGCCGACCCCTCCCCGCTCCTCTC--CAACCTGTAGCCACATAAAGCACCTCCTCATCTCTCT-----------------------CAGAGCTTTCCTCAGCTGTCT i mm10.chr11 C 0 I 11 s canFam3.chr9 39310564 736 - 61074082 -tctcctgttctcccagagggctactgcattccttctcctctgtccttagatcccctcctccctctcctttctttcagcccatggccttgcttcctg----tcttgaggaaatgaaagccatcaggagaggatcccaacaag-ttcccaacattacttccactcacacccatgagcctgtgtccaagttcttgctcttctcctgttacaatgcatgagctgtctgtgctccagtcatttgagcaattgcccactttcttgtatcattaatattttcctctctaccagattcttcccattggc-------tttcaaatagaataatttctcccaccttaaaaattttctctcttgaatccatatctacatttagttgtcattcaatttctctgctctccttcacctatagcaaagctcctcaaagtgtacagcttctctgtatctgctgttccaaattcctttagacttcccTCCAAGGGA-----CAAG---CTATACAGTCTGACCCCACTTTTACCCCAAGg-gtcaccc-------------------cttccctttcctcctcttctctcctttg---ttctttcctttgttcattcattatggacacattggctttcctgctattcctccaacccaactgacatacctgtgcctcatggcttttgcatttgctgttccctccac-ctggaaccctctctccatagccatgtaatgcacctgctcaccacttctaggtttttgttcaccttaacagtaaaacctttcctggctaccc i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 47946708 100 - 81552678 I a score=613413.000000 s hg38.chr17_JH159146v1_alt 76378 299 + 278131 tgtttaagatagcagctcttcaccctggtgcatctgccctcctc---ctctgcttcatctct--gtagcaattttctccatctaacatat--at--tttgatgatttgcacatttattatctgtcactcctactagaatataaactccTTCATT-AAAAA--ATCCTCAGTGCTAAGGATTGGTGTCAGATAGTAGAATGCATGaaaatgggtatacatgcctcgcctgtttcacagggccattgtgaaatactgtatgttaaaacgttttgaaagttg----------caCTATAAT------------------------TATTTTTGT-----------------------------------------ACTCATGATCTCTA s ponAbe2.chr17 24726257 298 - 73212453 tgtttaagatagcagctcttcaccctggtgcgtctgccctcctc---ctctgcttcatctct--gtagcaattttctccatctaacatat--at--tttgatgatttgcccatttattatctgtcactcctactagaatataaactccTTCATTAAAAAA--ATACTC--TGCTAAGGATTGGTGTCAGATAGTAGAATGCATGaaaatgggtatacatgcctcgcctgtttcacagggccgttgtgaaatactgtatgttaaaatgttttgaaagttg----------caCTATAAT------------------------TATTTTTGT-----------------------------------------ATTCATGATCTCTA i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53057684 306 + 80904711 tgtttaagatagcagctcttcaccctggtgcgtctgccctcctc---ctctgcttcatctct--gtagcaattttctccatctaacatatacat--tttgatgatttgcacatttagtatctgtcactcctactagaatataaactccTTCGTT-AAAAG--ATCCTCAGTGCTAAGAATTGGTGTCAGATAGTAGAATGCATGaaaatgggtatacatgcctcacctgtttcacagggccattgtgaaatactgtatgttaaaatgttttgaaagctgcaag-----acactataAT------------------------TATTTTTGT-----------------------------------------ACTCATGATCTCTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52580570 306 + 80997621 tgtttaagatagcagctcttcaccctggtgcgtctgccctcctc---ctctgcttcatctct--gtagcaattttctccatctaacatatacat--tttgatgatttgcacatttagtatctgtcactcctactagaatataaactccTTCGTT-AAAAG--ATCCTCAGTGCTAAGAATTGGTGTCAGATAGTAGAATGCATGAAAATGGGTatacatgcctcacctgtttcacagggccattgtgaaatactgtatgttaaaatgttttgaaagctgcaag-----acactataAT------------------------TATTTTTGT-----------------------------------------ACTCATGATCTCTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47625651 306 + 74645514 TGTTTAAGACAGCAGCTCTTCACCCTGGTGCGTCTGCCCTTCTC---CTCTGCTTCATCTCT--GTAGCAATTTTCTCCATCTAACATATACAT--TTTGATGATTTGCACATTTAGTATCTATCACTCctactagaatataaactccttCGTT-AAAAG--ATCCTCAGTGCTAAGAATTGGTGTCAGATAGTAGAATGCATGAAAATGGGTATACATGCCTCACCTGTTTCACAGGGCCATTGTGAAATACTGTatgttaaaatgttttgaaagctGCAAG-----Acactataat------------------------tatttttgt-----------------------------------------actcATGATCTCTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9893730 306 - 75148670 tgtttaagatagcagcttttcaccctggtgcgtctgccctcctc---ctctgcttcatctct--gtagcaattttctccatctaacatatgcat--tttgatgatttgcacatttagtatctgtcacttctactagaatataaactccTTCGTT-AAAAG--ATCCTCAGTGCTAAGAATTGGTGTCCGATAGTAGAATGCATGAAAATGGGTatacatgcctcgtctgtttcacagggccattgtgaaatactgtatgttaaaatgttttgaaagctgcaag-----acactataAT------------------------TATTTTTGT-----------------------------------------ACTCATGATCTCTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112738289 303 + 159171411 tgtttaagatggcagctcttcaccctggtgcatctgac---ctc---ccctgcttcatcttt--gtagcaattctctccgtctgacatagatat--tttgatgattttcacaatcattgtctgt--ctcctactagaatataaacgccTTCATT-AAAAAATATCCTCATTGCTAAGGATTGGTGTCAGACAGTAGGATGCATGaaaatgggtatacatgccttgcctgcctcacagggctattgtgaaatactgtatgttaaaatgttttggcagctgtaag-----acactataAT------------------------TATTTTTGT-----------------------------------------ACTCATGATCTCTA i calJac3.chr5 C 0 I 1140 s mm10.chr11 99482551 337 + 122082543 TGTTTAAGGTGGCAGTTCTTCCTTCTGCCATGTCTCCCTGTCTC---CCGT----------------GCAGTCTTCCCCGCCTGACATACATATAGTTAGATGGTTGACAGAACTGTGGTTTACATCCTC------AATG--------TTCATC-ACTAA--ATTCTCAGTGCTGTGCA-TAGTGCCAGAGGG---------GGAACACAGGCATCAGAGCCATATTGAC--CCCAGGACTATTGTGAAGTACAACA-GTTGAAATACACTGGACCCTGCAGAGCATCACACCGCGATCACGACTGCCACCTTGACAATGCATATTCTTATGGgagacagggtcttcacctcacagcttcggatagtgtcgaattaacgatctttc i mm10.chr11 I 11 I 55 s canFam3.chr9 39311300 292 - 61074082 tttttaaattggcggctctatatttcagcatgcctgacctcctcactccatgcttcatttcttagtagcacttttctccatctcacatatatat--tatga------------------tcggtcatccaaactagaatgtaaattccCTTATT-ATAGA--ATCCTTAGTATTTAGAA-TAGTATCAGATAGTAGAATGCATAAAAATGAATGCAAAtgtcttgctgacctcacatggttgttgtgaaatactgcatgtccaaatgctttgaaagccattaa-----acactgtaat------------------------tatttctgt-----------------------------------------gctcattattatCA i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 47946708 100 - 81552678 I e panTro4.chr17 66196685 798 - 82630442 M a score=7672.000000 s hg38.chr17_JH159146v1_alt 76677 4 + 278131 ------C-GTG s ponAbe2.chr17 24726555 5 - 73212453 ------CAGTG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53057990 5 + 80904711 ------CAGTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52580876 5 + 80997621 ------CAGTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47625957 5 + 74645514 ------CAGTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9894036 5 - 75148670 ------CAGTG i chlSab2.chr16 C 0 C 0 s mm10.chr11 99482943 5 + 122082543 ------CAGTG i mm10.chr11 I 55 C 0 s canFam3.chr9 39311592 11 - 61074082 CCTTGACAATG i canFam3.chr9 C 0 C 0 e calJac3.chr5 112738592 1140 + 159171411 I e nomLeu3.chr19 47946708 100 - 81552678 I e panTro4.chr17 66196685 798 - 82630442 M a score=584911.000000 s hg38.chr17_JH159146v1_alt 76681 275 + 278131 CACATTTGCAGTGTCTG--TTCAC--------CATCACGGATGCATAAAACACAGCAGTCATTTACCCAAGTGCACCTGCAACATAAATGAACAAATCATTGCCTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAATTATATGGATGAATGATTAGAAGACTCAATAGGGTATACTGGGAATCAAATGATAGA---CCTT----CATAAATTTTGAATGC--TTATGAC---CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTT----AGAGT s ponAbe2.chr17 24726560 276 - 73212453 CACATTTGCAGTGTCTG--TTCAC--------CATCACAGATGCATAAAACACAGCAGTCATTTACCCAAGCGCACCTGCAACGTAAACGAACAAATCATTGCCTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAATTATATGGATGAATGATTAGAAGACTCAATAGGGAATACTGGGAATCAAATGATAGA---CCTT----CATAAATTTTGAGTGC--TTATGACA--CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTT----AGAGT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53057995 277 + 80904711 CACATTTGCAGTGTCTG--TTCAC--------CATCATGGATGCTTAAAACACAGCGGTCATTTACCCAAGTGCACCTGCCACGTAAATGAACAAATCATTGCCTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAATTATAAGGATGAATGATTAGAAGACTCAGTAGGGTATACTGGGAATCAAATGATAGA---CCTT----CATAAATTTTGAATGC--TTATGACA--CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTTA---AGAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52580881 277 + 80997621 CACATTTGCAGTGTCTG--TTCAC--------CATCATGGATGCTTAAAACACAGCGGTCATTTACCCAAGTGCACCTGCCACGTAAATGAACAAATCATTGCCTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAATTATAAGGATGAATGATTAGAAGACTCAGTAGGGTATACTGGGAATCAAATGATAGA---CCTT----CATAAATTTTGAATGC--TTATGACA--CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTTA---AGAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47625962 277 + 74645514 CACATTTGCAGTGTCTG--TTCAC--------CATCACGGATGCTTAAAACACAGCAGTCATTTACCCAAGTGCACCTGCCACGTAAATGAACAAATCATTGCCTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAATTATAAGGATGAATGATTAGAAGACTCAGTAGGGTATACTGGGAATCAAATGATAGA---CCTT----CATAAATTTTGAATGC--TTATGACA--CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTTA---AGAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9894041 277 - 75148670 CACATTTGCAGTGTCTG--TTCAC--------CATCACGGATGCATAAAACACAGCGGTCATTTACCCAAGTGCACCTGCCACGTAAATGAACAAATCATTGCTTCTCAAGACTGAGGGTAGAA---TCGCACTTGGCAGTTATAAGGATGAATGATTAGAAGACTCAGTAGGGTATACTGGGAATCAAATGATAGA---CCTT----CATACATTTTGAATGC--TTATGACA--CATGCTAAGCATTTTTCT--AAACTGTGAAGATGATAGAAATGACTTGGACACAAGAACTTA---AGAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112739732 283 + 159171411 CACATTT-CAGTGTCTG--TTCACAACGTTTGTATCACAGATGCATAAAACCTAATGGCTATTTGCCCAAGAGCACCTGCAACGGAAACGAACAAGTCATTTCCTCTCAAGACTGAGGGTAGAC---TAGCACTTGGCGATTATGTGGGTGAATGATTAGAACACTCAGTAGGCTATACTGGGAATCAAATGATACA---CCTT----AATGAATTCTGAATGC--TTATGACA--CATACCAAGCATTTTTCT--AAACTGTGAAGGTGATAGACATGACGTGGACACAAGAATTT----AGAGT i calJac3.chr5 I 1140 C 0 s mm10.chr11 99482948 274 + 122082543 CACACTT-TAATGTCTGACCTCGC--------TATCATTAATTCACAAAACA---AGGTTATTCACCATATGGTTTTTGCAAAACAAATGAACTAATTAAGCATATTCAAAATGCAGGGTAAAGAACCTACTCTCAGGAGTTACGGTGGTG-GTGATCAGAAGGTTCAGTAGA------TATGAATAAAATGATAGT---TTGCATGGCATGAGTTTTGGATACAGTACTCACA--CAGGCT----GTCTTACC--AAACCACAATGAAAATAGAAATAGCATACCCTCATGAACGTATGCAGG-- i mm10.chr11 C 0 C 0 s canFam3.chr9 39311603 271 - 61074082 TACCTTTTAAATGTCTG--TTTAC--------CATCACTTATTCCTAAAACATAACAGTAATTTACC-ATGTGTATCTCCAATA-GAATGAACCAATTATT-CTCCTCAAGATCAAGGGCAGAG---TAGCACTTGGAAATAATATTGATAAATGATTAGAAGATTCA---------AATGGGAATCAAATGACAGATTTCATT----TAATGATTTTGAGTGC--TTGTGACACTCATACAAAGCATTTTACTAAAAACCATGAAAATTATAGAAATGACTTAGAAATAAGAATTT----ATAGT i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 47946708 100 - 81552678 I e panTro4.chr17 66196685 798 - 82630442 M a score=2707097.000000 s hg38.chr17_JH159146v1_alt 76956 863 + 278131 TTTCTGGGTGATAAGACATATACATA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTT-AGCCAGGCCTGGATCTGCCACCTA-CCATGTTGGCACTGGAATTTCTCTACATTGGGGTTTGAGGGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGGGG---------GT---CTAGAATCCC--CCTTCCTCCAAATAAATCATATgg-tttcatcaccagttacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcctcatctctaaaatggggacactaagacctatctgggaaggttactgtaaggattaatgacatttaatatcatgaactacttagcacaatgcctggcaccatcgggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTTGGATGGAAAGTGGAAAGTGAGAGTTGTCCCAAGGGAGTTGAGG-GTCAGGGCCTGGGAGAGAGGTC-------TCAGAAGGCTTCGTGAAGGAGGTGGTGTGGGATTCACGGTTTTCCTAGCCTTGACTCACCGTGCTGTACTGTGTCTGCAGGTCAATCTCCAGGGCCTGGAATGTGCGCTTCAGTTCGTGGATGTCACCTTGTCTGCTCTGCACAGTGGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTGGGACCAAGCA-A--GGCAAAGGCGTCAGCATTGGGACCTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCTTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCCTGGGACCT s panTro4.chr17 66197492 861 - 82630442 TTTCTGGGTGATAAGACACATACATA-----------------------------------------A-TGAATAGGGCAGTGCTT-GGAGTT-AGCCAGGCCTGGATCTGCAATGTA-CCATGTTGGCACTGGAATTTCTCTACATTGGGGTTTGAGGGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGGGG---------GT---CTAGAATCCC--CCTTCCTCCAAATAAATCATATGG-TTTCATCACCAgttacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcctcatctctaaaatggggacactaagacctatctggaaaggttactgtaaggattaatgacatttaatatcatgaactacttagcacaatgcctggcaccatcgggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTGGGATGGAAAGTGGAAAGTGAGAGTTGTCCCAAGGGAGTTGAGG-GTCAGGGCCTGGGAGAGAGGTC-------TCAGAAGGCTTCATGAAGGAGGTGGTGTGGGACTCACGGTTTTCCTAGCCTTGACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAATGTGCGCTTCAGTTCGTGGATGTCACCTTGTCTGCTCTGCACAGTGGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTGGGACCAAGCA-A--GGCAAAGGCGTCAGCATTGGGCCCTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCTTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCCTGGGACCT i panTro4.chr17 M 798 C 0 s ponAbe2.chr17 24726836 863 - 73212453 TTTCTGGGTGATAAGACACATACATA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTT-AGCCAGGCCTGGATCTGCCACCTA-CCATATTGGCACTGGAATTTCTCTACATTGGAGTTTGaggggg-gtagcctggttgtaagtgga--gagggcactgatagaaa----ttatgggg---------gt---ctggaatccc--ccctcctccaaataaatcacatgg-tttcaccaccagtcacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcttcatttctaaaatggggacactaagacctatctggaaaggttactgtaaggattaatggcatttattatcaagaactacttagcacaacgcctggcaccatctggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTTGGATGGAAAGTGGAAAGTGAGAGGTGTCCCAAGGGAGTTGAGG-GCCAGAGTCTGGGAAAGGGGTC-------TCAGAAGGCTTTGTGGAGGAGGTGGTGTGGGACCCAGGGTTTTCCTAGCCTCAACTCACCGTGCTGTACTGTGCCTGCAGATCAATCTCCAGGGCCTGGAATGTGCGCTTCAGCTCGTGGATGTCACCTTGTCTGCTCTGCACAGGGGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTGGGACCAAGCA-A--GGCGAAGGCGTCAGCATTGGGACCTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAATGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCTTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCCTGGGACCT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53058272 863 + 80904711 TTTCTGGGTGATAAGACACATACCTA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTG-AGCCAGGCCTGGATCTGCCACCTA-CCATGTTGGCACTGGAATTTCTCTATATCAGCGTTTGAGGGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGGGG---------GT---CTAGAATCCC--CCCTCCTCCAAATAAATCACATGG-TTTCACCACCAgtcacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcctcatctctaaaatggggacactaagacctatctggaaaagttgctgtaaggattaatgacatttaatatcatgaactacttagcacaacgcccggcaccatctggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTTGGATGGGAAGTGGAAAGTGAGAGGTGTCCCAAGGGAGCTGAGG-GTCAGGGCCTGGGAGAGAGGTC-------TCAGAAGGCTTCATGGAGGAGGTAGTGTGGGACCCAGCATTTTCCCAGCCTCGACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAACGTGCGCTTCAGCTCGTGGATGTCACCTTGTCTGCTCTGCACAGCAGCTGGACTGGCTGCTTCCTGGGACATGGCTGCAGACTGTAGGACCAAGCA-A--GGCGAAGGTGTCAGCATTGGGAACTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCCTGTCTCATATCCTCCAGAACCTTAATCAGATCTTCCTTGGGACCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52581158 863 + 80997621 TTTCTGGGTGATAAGACACATACCTA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTG-AGCCAGGCCTGGATCTGCCACCTA-CCATGTTGGCACTGGAATTTCTCTATATCAGCGTTTGAGGGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGGGG---------GT---CTAGAATCCC--CCCTCCTCCAAATAAATCACATGG-TTTCACCACCAgtcacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcctcatctctaaaatggggacactaagacctatctggaaaagttgctgtaaggattaatgacatttaatatcatgaactacttagcacaacgcccggcaccatctggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTTGGATGGAAAGTAGAAAGTGAGAGGTGTCCCAAGGGAGCTGAGG-GTCAGGGCCTGGGAGAGAGGTC-------TCAGAAGGCTTCATGGAGGAGGTAGTGTGGGACCCAGCATTTTCCCAGCCTCGACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAACGTGCGCTTCAGCTCGTGGATGTCACCTTGTCTGCTCTGCACAGCAGCTGGACTGGCTGCTTCCTGGGACATGGCTGCAGACTGTAGGACCAAGCA-A--GGCGAAGGCGTCAGCATTGGGACCTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCCTGTCTCATATCCTCCAGAACCTTAATCAGATCTTCCTTGGGACCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47626239 863 + 74645514 TTTCTGGGTGATAAGACACATACCTA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTG-AGCCAGGCCTGGATCTGCCACCTA-CCATGTTGGCACTGGAATTTCTCTATATCAGGGTTTGAGTGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGGGG---------GT---CTAGAATCCC--CCCTCCTCCAAATAAATCACATGG-TTTCACCACcagtcacttactagctgtgtgaccttggccaattTATTTTACTG-TTGGAGTTTTGGTTTCCTCTTCTCTAAAATGGGGACACTAAGACCTATCTGGAAAAGTTGCTGTAAGGATTAATGACATTTAATATCATGAACTACTTGGCACAACGCCCGGCACCATCTGGACACT--------CAATACATGGTCGCCCTTTATTATGGTTCTCATCATAAACAGTTTGGATGGAAAGTGGAAAGTGAGAGGTGTCCCAAGGGAGCTGAGG-GTCAGGGCCTGGGTGAGAGGTC-------TcagaaggcttcatggaggaggtagTGTGGGACCCAGCATTTTCCCAGCCTCGACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAATGTGCGCTTCAGCTCGTGGATGTCACCTTGTCTGCTCTGCACAGCAGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTAGGACCAAGCA-A--GGTGAAGGCATCAGCATTGGGAACTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCTAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCCTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCTTGGGACCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9894318 863 - 75148670 TTTCTGGGTGATAAGACACATACCTA-----------------------------------------AATGAATAGGGCAGTGCTTTGGAGTG-AGCCAGGCCTGGATCTGCCACCTA-CCATGTTGGCACTGGAATTTCTCTATATCAGGGTTTGAGGGGG-GTAGCCTGGTTGTAAGTGGA--GAGGGCACTGATAGAAA----TTATGAGG---------GT---CTAGAATCCC--CCCTCCTCCAAGTAAATCACATGG-TTTCACCACCAgtcacttactagctgtgtgaccttggccaatttattttactg-ttggagttttggtttcctcatctctaaaatggggacactaagacctatctggaaaagttgctgtaaggattaatgacatttaatatcatgaactacttagcacaacgcctggcaccatctggacact--------caatacatggtagccctttattATGTTTCTCATCATAAACAATTTGGATGGAAAGTGGAAAGTGAGAGGTGTCCCAAGGGAGCTGAGG-GTCAGGGCCTGGGAGAGAGGTC-------TCAGAAGGCTTCATGGAGGAGGTAGTGTGGGACCCAGCATTTTCCCAGCCTCGACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAACGTGCGCTTCAGCTCGTGGATGTCACCTTGTCTGCTCTGCACGGCAGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTAGGACCAAGCA-A--GGCAAAGACATCAGCATTGGGACCTCATGGAAATGCAACCTTTGGGAAGTTTGTGCATCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTCGATGCTTCTTCTTTATTATAAGCTCATATTCCTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCTTGGGACCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112740015 863 + 159171411 TTGCTGAGTGATAAGACACATACATA-----------------------------------------AATGAATAGGGAAGTGCTTTGCAGTTAAGCCAGGCCTGGATTTACCACCTA-CCATGTTGGCACTGGAATTTCTCTATTTTGGGGTTTGAGGGGGTGTAGCCTGGTTGTAAGTGGA--GATGGCACTGATAGAAA----TCATGGAG---------GT---CTAGAA-CCC--CCCTCCTCCAAATAAATCACATGG-TTTCTCCACCAgttatttactagctgtgtgtccttagccaatttattttactg-ttggagttttggtttcctcatctctaacgtggggacagtaagagctatccggaaaggttactgtaagga-taatgacatttaatatcatgaaccacctagcacattacacggcaggatctggacact--------caatacatggtagccctttattATGGTTCTCATCATAAACAATTTGGGTGGAAAGTGGAAAGTGATAGGTGTCCCAAAGGAGTTGAGG-GTCGGGGTCTGGGAGAGAGATC-------TTGGAAAGCTTCACGTAGGAGGTGGTGTGGGACCCAGGGTGTTCCTAGCCTCTACTCACCGTGCTGTACTGTGCCTGCAGGTCAATCTCCAGGGCTTGGAATGTGCGCTTCAGCTCGTGGATATCACCTTGTCTGCTCTGCATGGCGGCTGGACTGGCTGCCTCCTGGGACATGGCTGCAGACTGTGGGACCAAGCA-A--GGCAAAGGCATCAGCATTGGGACTCCATGGAAATGCAGCCTTTGGGAAGTTAGTGCACCTTTCTTTTACCTGTTCTTTATACCAAGTGTCCAAGTCTTGGTGCTTCTTCTTTATTATCAGCTCATATTCTTGTCTCATATCCTCCAGGACCTTAATCAGATCTTCCCTGGGACCC i calJac3.chr5 C 0 C 0 s mm10.chr11 99483222 835 + 122082543 GTAGTGTGTGACAGGTCACACACATA-----------------------------------------G-TGAACAGGG-AGTACATTGGAGTC-AG-CACAACTAAATCGGCTACTTA-TCATG------CTTGAATTTCTTTTTACTGGAGTTTGGGGAAC-ATA--CTGGTTATAAATGGGGTGAGAGGACTGATAGACAATATCTATGGGGAAGGGAGCTGT---CTAGCATCCC--CCACCCCT----GAAATCACATGACCCCCACCACCAGCAGctcacaaactgtgtgaccgttgctaaatctgttaactgcctggagctttggtttcctttttgtcagaatgagaaggccaagacctcccAGGAAAGCACAATTTGACTACCAACAGCACTGGATATAAAGAGCTACTCAGT-CAATGTCTAGC-------------------------TATGCCTTTGCACATATTTCTTCTCCTCAACATGAACATTTTGAATGGATCGTAGACAATGAGAGAAGTCCAAAGGGGCCCGGGGAGCTGAGGCCAGGGGACAAGGTC-------ATGGAAGGCCTTGTGAAGGAGACTGTACAGGGTCCAG------------CTCAACTCACCCTGCTGTGCTGGGCCTGCAGGTCAATCTCTAGGGCCTGGAATGTTCTCCTCAGCTCATGGATATCACTTTGGTTGCCCTGTACAGGCGCTGGACTGGCCACTTCCTGGGCCATGGCGGCTGACTGT-GGAGCAAGCGTA--TGCAGGACAATCAGTATTGTGACGT-GTGGGGATAGAAGAATCGGGCTGTCTGGTCACTTTTCTTTTACCTGCTCTCTGAACCAGGTGTCCAACTCTTGATGTTTCTTCTTTATTATTAACTCGTATTCCTGCCTCATATCTTCCAAGACCTTAATCAGATCTTCCCCTGGAGTA i mm10.chr11 C 0 C 0 s canFam3.chr9 39311874 906 - 61074082 TTACTGGATGATAAGACATCtatatatatatatatatatatatatatatatatatatatatatatataAtggacagagcactactttggagtc-agacagggctggatttgCCACCAATTCATGTTGACACCAGAATTTCTTTGTATTAGGGCTTCAGGGG--GCATCCTGGTTGTAAGTGGG--GAGAGTACTGGT-GAGA----TTATGAGG---------ACGTACTAGACCCCCCACACTTCTCCTCAAACACCAGGTGG-TTATACCACTGgccacttactatttgtatgactttggacaatttat--------ctggagctttggtttcctcatctataaaatgagaacacaaagacctgcctggaaaggttaatgtgaggattgatggcagttaacataatgaactccctggcatacactgtggcacaaggtagaaaccttgtgccacaataaatgatagctc-ttattaCCATTATCATTTTGAACAATCTGGATGGAAAGTGGGAAGTAAGAAATGTCCCAAGGGAGTTGGAG-AGAGAGGCCCAGGCAAGAAATCAAGAGAGTCAAGAGAAGTCAAGGAGGAGGTGGTACCTGACCC----------TAGCTCAGACTCACTCTGTTGCGCTGTGCCTGCAGGTCAATCTCCAGGGCCTGGAAAGTGCGCTTCAGTTCATGGATGTCACTTTGGCTACTCTGCACAGTTGCTGGACTGGCCACCTCCTGGGCCATGGCTGCTGCCTATGAGA-CAAGCA-AAGGGCAGAGGCATTGGCATTGGGACCACATGGAAATGGAACCTTTGGGAAGTTTGAGCACCTTTCCTTTACCTGCTCTTTATACCAAGTGTCCAAGTCTTGATGCTTCTTCTTTATTATAAATTCATATTCCTGCCTCATATCCTCCAGGACCTTAATCAGATCTTCTCCTGGAATT i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 47946708 100 - 81552678 I a score=989648.000000 s hg38.chr17_JH159146v1_alt 77819 264 + 278131 GTATCCACCTTCACATTGACATTGAAGTCACTTGGCACATGATGCTTCTCCATTTCCTATTTAATAACAGAGAAAGGAAATGAACCGGCTT-TGACAATCAGAAGGCTGGATTGCCATGTTGATTGGCAGTGGTAAATAGATCTTTTAAACATTCCGATTATGTGGTTGCTC-CCACTGTCAC-----TGGTTTG---GTTTCTCAAATATTA-CTTACTTGTTGGTGATAAAACATTGTATACTTTTTTCTCTAATAATTTTATAAAATAAAGA s panTro4.chr17 66198353 263 - 82630442 GTATCCACCTTCACATTGACATTGAAGTCACTTGGCACATGATGCTTCTCCATTTCCTATTTAATAACAGAGAAAGGAAGTGAACCGGCTT-TGACAATCAGAAGGCTGGATTGCTATGTTGATTGGCAGTAGTAAATAGATCTTTTAAACATTCCGATTATGTGGTTGCTC-C-ACTGTCAC-----TGGCTTG---GTTTCTTAAATATTA-CTTACTTGTTGGTGATAAAACATTGTATACTTTTTTCTCTAATAATTTTATAAAATAAAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24727699 259 - 73212453 GTGTCCACCTTCACATTGACACTGAAGTCACTTGGCACATGATGCTTCTCCATTTCCTATTTAATAACAGAGAAAGGAAATGAACTGGCAT-TGACAATCAGAAGGCTGGATTGCCATGTTGATTGGCAGTGGTAAATAGATCTTTTAAACATTCCAATTATGTGGTTGCTC-C-ACTGTCAC-----TGGTTTG---GTTTCTCAAATA-----TTACTTGTTGATAATAAAACATTGTATACTTTTTTCTCTAATAATTTTATAAAATAAAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47946808 263 - 81552678 GTATCCACCTTCACATTGACATTGAAGTCACTTGGCACATGATGCTTCTCCAATTCCTATTTAATAACAGAGAAAGGAAATGAACTGGCTT-TGACAATCAGAAGGTTGGATAGCCGTGTTGATTGGCAGTGGTAAATGGATCTTTTAAACATTCCAATTATGTGGTTGCTC-C-ACTGTCAC-----TGGTTTG---GTTTCTTAAATATTA-CTTACTTGTTGATGATAAAACATTGTATACTTTTTTCTCTAATAATTTTATGAAATAAAGA i nomLeu3.chr19 I 100 C 0 s rheMac3.chr16 53059135 259 + 80904711 GTGTCCACCTTCACGTTGACACTGAAGTCACTTGGCACATGATGCTTCTCCATTTCCTGTTTAATAACAGAGAAAGGAAATGAACTGGGTT-TGATAATCAGAAGGCTGGATTGCCGTGTTGATTGGCAGTGGTCAATGGATCTTTTAAACATTCTGATTATGTGGTTGCTC-C-ACTGTCGC-----TGGTTTG---GTTTCTCAAATG-----TTACTTGTTGATGATAAAACATTGTATACTTTTATCTCTAATAATTTTATAAAATAAAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52582021 259 + 80997621 GTGTCCACCTTCACGTTGACACTGAAGTCACTTGGCACATGATGCTTCTCCATTTCCTGTTTAATAACAGAGAAAGGAAATGAACTGGGTT-TGATAATCAGAAGGCTGGATTGCCGTGTTGATTGGCAGTGGTCAATGGATCTTTTAAACATTCTGATTATGTGGTTGCTC-C-ACTGTCGC-----TGGTTTG---GTTTCTCAAATG-----TTACTTGTTGATGATAAAACATTGTATACTTTTATCTCTAATAATTTTATAAAATAAAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47627102 259 + 74645514 GTATTCACCTTCACATTGACACTGAAGTCATTTGGCACATGATGCTTCTCCATTTCCTGTTTAAtaacagagaaaggaaatgaactGGGTT-TGATAATCAGAAGGCTGGATTGCCGTGTTGATTGGCAGTGGTCAATGGATCTTTTAAACATTCTGATTATGTGGTTGCTC-C-ACTGTCGC-----TGGTTTG---GTTTCTCAAATG-----TTACTTGTTGATGATAAAACATTGTATACTTTTGTctctaataattttataaaataaaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9895181 259 - 75148670 GTATCCACCTTCACATTGACACTGAAGTCCCTTGGCACATGATGCTTCTCCATTTCCTGTTTAATAACAGAGAAAGGAAATGAACTGGGTT-TGATAATCTGAAGGCTGGATTGCCATGTTGATTGGCAGTGGTCAATGGATCTTTTAAACATTCTGATTATGTGGTTGCTC-C-ACTGTGGC-----TGGTTTG---GTTTCTCAAATG-----TTACTTGTTGATGATAAAACATTGTATACTTTTATCTCTAATAATTTTATAAACTAAAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112740878 264 + 159171411 GTATCCACCTTCACGTTGACCTTCAAGTCACTTGGCACATGTTGCTTCTCCATTTCCTATTTAATAACAGAGAAAGGAAATGGACCAGCTT-TGGCAATCAGAAGGCTGGATTGCTGTGTTGATTGGCAGGGGTAAATGGATCTTTTAAACATTCCGGTTATGTGGTTGCTC-C-ACTGCCACTGGTTTGGTTTG---GTTTCTCAAATA-----TTACTTGTTGATGATAAAACAGTGTATACTTTAATCTCTAATAATTTTATAAAATAAAGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99484057 244 + 122082543 GTGTCCACCTTCACACTGACCTTGAAGTCACTCGGCAAGTGATTCTCCTCCATTTCCTGTTTAGTAACAGAGAAAGAAAATGAATTGGCCCGTGACAATCAGAAGGATGGATTGTTGTGTTAATTGGCATCGGTAAATGG------------TTCTATTTTCGTGGTTG--C-C-ACTCTCAC-----TGGCATGCCAATTTTGTAGTTA-----TTACAGATCG---ACTAGACATCATGTGCATTT-TCTCCAA-AACTTTATAAGATACAGA i mm10.chr11 C 0 I 1110 s canFam3.chr9 39312780 266 - 61074082 GTATTCACCTTCACATTGACCTTGAAGTCATTTGGCATATGATGTTCCTTCATTTCCTGTTTAGTAATAGAGAAAGAAAATGAACTGGCTT-TGGTAATCAGAAGACCAGA--AGTGTGTTGACTGGCAGCAGTTAACAGGTCTTTTAAAAATTCAGCTCTTGTGGTTTTTTAT-TCTTTTACTGGTATGGTTTG---ATTTCTTAGTTATTATCTTATTCATTAATGGCAAAACATTGTATATTTT--TCTATTATAACCTTAGAAAATAAAAA i canFam3.chr9 C 0 C 0 a score=26100.000000 s hg38.chr17_JH159146v1_alt 78083 8 + 278131 ATATCttt s panTro4.chr17 66198616 8 - 82630442 ATATCttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24727958 8 - 73212453 ATGTCttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47947071 8 - 81552678 ATATCttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53059394 8 + 80904711 ATATCttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52582280 8 + 80997621 ATATCttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47627361 8 + 74645514 atatcttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9895440 8 - 75148670 ATATCttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112741142 8 + 159171411 ATATCttc i calJac3.chr5 C 0 C 0 s canFam3.chr9 39313046 8 - 61074082 ATAGCACT i canFam3.chr9 C 0 I 218 e mm10.chr11 99484301 1110 + 122082543 I a score=348655.000000 s hg38.chr17_JH159146v1_alt 78091 118 + 278131 gagaccaacctgaccagcatggagaaaccctgtctctactaaaaatacaaaaa--attaactgggtgtggttgtacacacctttaatcccagctacttgggaggctgaggcaggagaatc s panTro4.chr17 66198624 118 - 82630442 gagaccaacctgaccagcatggagaaaccctgtctctactaaaaatacaaaaa--gttagctgggtgtggtggtacacacctgtaatcccagctacttgggaggctgaggcaggagaatc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24727966 118 - 73212453 gagaccaacctgaccagcatggagaaaccctgtctctactaaaaatacaaaaa--tttagctgggtgtggtagaaaacacctgtaatcccagctacttgggaggctgagacaggagaatt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47947079 117 - 81552678 gagaccaacctgaccagcatggagaaaccctgtctctactaaaaatacaaaaa---ttagctgggtgtggtggtacacacctgtaatcccagctacttgggaggctgaggcaggagaatc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53059402 118 + 80904711 gagaccaacctgaccagcatggtgaaaccccatctctactaaaaatacaaaaa--attaactgggtgtggtggtgcacgcctgtaatcccagctacttgggaggctgaggcaggagaatc i rheMac3.chr16 C 0 M 353 s macFas5.chr16 52582288 118 + 80997621 gagaccaacctgaccagcatggtgaaaccccatctctactaaaaatacaaaaa--attaactgggtgtggtggtgcacgcctgtaatcccagctacttgggaggctgaggcaggagaatc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47627369 118 + 74645514 gagaccaacctgaccagcatggtgaaaccccatctctactaaaaatacaaaaa--attaactgggtgtggtggtgcacgcctgtaatcccagctacttgggaggctgaggcaggagaatc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9895448 118 - 75148670 gagaccaacctgaccagcatggtgaaaccccatctttactaaaaatacaaaaa--attagctgggtgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112741150 120 + 159171411 aagaccagcctgatcagcattgtgaaacctcgcctctactaaaaatacaaaaaaaattaggcaggtgtgatggcacatgcctgtaattccagctacttgggaggctggggcaagcgaatc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39313054 218 - 61074082 I e mm10.chr11 99484301 1110 + 122082543 I a score=193505.000000 s hg38.chr17_JH159146v1_alt 78209 85 + 278131 gcttgaacctgcgaggtggaggctgcagt-gagccgagattgcgccactgcactccagcctgggtgacagagtgaga--ccctgtctc s panTro4.chr17 66198742 85 - 82630442 acttgaacctgggagatggaggctgcagt-gagccgagattgcgccactgcactccagcctgggtgacagagcgaga--ccctgtctc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24728084 86 - 73212453 gcttgaacctgggaggtggaggctgcagtggagccaagattgcgccactgcactccagcctgggtgacagagcaaga--ccctgtctc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47947196 85 - 81552678 gtttgaacctgggaggtggaggctgcagt-gagccgagattgcgccactgcactccagcctgggtgacagagcgaga--ccctgtctc i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52582406 85 + 80997621 ccttgaacttgggaggtggaggctgcagt-gagccgagatcgcgccactgcactccagcctgggtgacagagtgaga--ccctgtctc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47627487 85 + 74645514 ccttgaacttgggaggtggaggctgcagt-gagccgagatcgcgccactgcactccagcctgggtgacagagtgaga--ccctgtctc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9895566 84 - 75148670 ccttgaacttggcaggtggaggctgcagt-gagctgagattgcgccactgcactccagcctgggtgacagagtgagg---cctgtctc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112741270 87 + 159171411 gcttaaacctgggagatggagcttgcagt-gagccaagatcatgccactgcactccagcctgggtaacagagtgagagagcctgtctc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39313054 218 - 61074082 I e mm10.chr11 99484301 1110 + 122082543 I e rheMac3.chr16 53059520 353 + 80904711 M a score=-500.000000 s hg38.chr17_JH159146v1_alt 78294 1 + 278131 c s panTro4.chr17 66198827 1 - 82630442 c i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24728170 1 - 73212453 a i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52582491 1 + 80997621 a i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47627572 1 + 74645514 a i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9895650 1 - 75148670 a i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112741357 1 + 159171411 a i calJac3.chr5 C 0 C 0 s canFam3.chr9 39313272 1 - 61074082 c i canFam3.chr9 I 218 C 0 e mm10.chr11 99484301 1110 + 122082543 I e rheMac3.chr16 53059520 353 + 80904711 M e nomLeu3.chr19 47947281 0 - 81552678 C a score=1341083.000000 s hg38.chr17_JH159146v1_alt 78295 412 + 278131 aaaaaaaaaaaaaaaaaaaaaaa--------------------------gaaTATCATAAGGCAGGTAATCAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCAGAAAGAATTATGCTTCCATAGTGTGCAAAGTCCTGTTCAGCAGATGTGGATTGGTGAAGTGACAACATAGTTAAGCAGCTGAACCTTACAGGCTATAGGCCAAAGCTTTTGGGAAGCAGTTCAAGAGGCAAACAGCAGAAAGAAGGTGTAGAGGCTTTCAAAATCTCATCAATGCCTTGTGACACTGTAGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAAGGTTTAATTAACAATCATTGTCTAACCAGCTATTCAGAAACTGAGCTCTTTGATGTTGAGAAGCAATTTTGTTTTCCTAAAAT s panTro4.chr17 66198828 414 - 82630442 aaaaaaaaaaaaaaaaaaaaaaa------------------------aagaaTATCATAAGGCAGGTAATCAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCACAAAGAATTACGCTTCCATAGTGTGCAAAGTCCTGTTCAGCAAATGTGGATTGGTGAAGTGACGACATAGTTAAGCAGCTGAACCTTACAGGCTATAGGCCAAAGCTTTTGGGAAGCAGTTCAAGAGGCAAACAGCAGAAAGAAGGTGTAGAGGCTTTCAAAATCTCATCAATGCCTTGTGACACTGTAGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAAGGTTTAATTAACAATCATTGTCTAACCAGCTATTCAGAAACTGGGCTCTTTGATGTTGAGAAGCAATTTTGTTTTCCTAAAAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24728171 413 - 73212453 aaaaaaaaaaaaaaaaaaaaaaa-------------------------agaaTATCATAAGGCAGGTAATCAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCAGAAAGAATTACGCTTCCATAGTGTGCAAAGTCCTGTTCAGCAGACGTGGATTGGTGAAGTGACAACATAGTTAAGCAGCTGAACCTTCCAGGCTATAGGCCAAAGCTTTTGGGAAGCAGTTCAAGAGGCAAACGGCAGAAAGAAGGTGTAGAGGCTTTCAAAATCTCGTCAGTGCCTTGTGACCCTGTAGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAAGGTTTAATTAACAATCGTTGTCTAACCATCTATTCAGAAACTGGGCTCTTTGATGTTGAGAAGCAATTTTGTTTTCCTAAAAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47947281 407 - 81552678 -----aaaagaaaaaaaTAATAA--------------------------TAATACCATAAGGCAGGTAATCAAATAGCCTCCATGATTACTGACTTGATCCATGGTTGAAAATATTTCAGAAAGAATTACGCTTCCATAGTGTGCAAAGTCCTGTTCAGCAGATGTGGATTGGTGAAGTGACAACATAGTTAAGCAGCTGAACCTTCCGGGCTATAGGCCAAAGCTTTTGGGAAGCAGTTCAACAGTCAAACGGCAGAAAGAAGGTGTAGAGGCTTTCAAAATCTTGTCAATGCCCTGTGACCCTGTAGGGCTGACGCCCATAGGATTTCATGAAAACCAAACAGCCACAGGAAAGGTTTAATTAACAATCATTGTCTAACCAGCTGTTCAGAAACTGGGTTCTTTGATGTTGAGAAGCAATTTTGTTTTCCTAAAAT i nomLeu3.chr19 C 0 I 810 s rheMac3.chr16 53059887 411 + 80904711 -aaaaaaaaaaaaaaaaaaaaaa--------------------------aaaaTTCATAAGGCAGGTAATTAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCAGAAAGAATTACGCTTTCATAGTGTGTAAAGTCCCGTTTGGCAGATGTGGATTGGTGAAGTGACAACATAGTTAGGCAGCAGAACCTTCCAGGCTATAGGCCAAAGCTTTCGGGAAGCCGTTCAAGAGGCAAACGGCAGAAAGAAGGGGTAGAGGCTTTCAAAATCTCGTCAATGCCTTGTGACCCTGTGGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAATATTTAATTAACAATTATTGTCTAACCAGCTATTCAGAAATTGGGCTCTTTGATGTTCAGACGCAATTTTGTTTTCCTACCAT i rheMac3.chr16 M 353 C 0 s macFas5.chr16 52582492 408 + 80997621 ----aaaaaaaaaaaaaaaaaaa--------------------------aaaaTTCATAAGGCAGGTAATTAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCAGAAAGAATTACGCTTTCATAGTGTGTAAAGTCCCGTTTGGCAGATGTGGATTGGTGAAGTGACAACATAGTTAGGCAGCAGAACCTTCCAGGCTATAGGCCAAAGCTTTCGGGAAGCCGTTCAAGAGGCAAACGGCAGAAAGAAGGGGTAGAGGCTTTCAAAATCTCGTCAATGCCTTGTGACCCTGTGGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAATATTTAATTAACAATTATTGTCTAACCAGCTATTCAGAAATTGGGCTCTTTGATGTTCAGACGCAATTTTGTTTTCCTACCAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47627573 403 + 74645514 ---------aaaaaaaaaaaaaa--------------------------aaaattcataaggCAGGTAATTAAATAGCCTCCATGATTACTGACTTGATCCGTggttgaaaatatttcagaaagaatTACGCTTCCATAGTGTGTAAAGTCCCATTTGGCAGATGTGGATTGGTGAAGTGACAACAAAGTTAGGCAGCAGAACCTTCCAGGCTATAGGCCAAAGCTTTCAGGAAGCCGTTCAAGAGGCAAATGGCAGAAAAAAGGGGTAGAGGCTTTCAAAATCTCGTCAATGCCTTGTGACCCTGTGGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAAGATTTAATTAACAATTATTGTCTAACCAGCTATTCAGAAATTGGGCTCTTTGATGTTCAGACGCAATTTTGTTTTCCTACCAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9895651 403 - 75148670 ------aaaaaaaaaaaaaaaaa--------------------------aaaaaTCATAAGGCAGGTAATTAAATAGCCTCCATGATTACTGACTTGATCCGTGGTTGAAAATATTTCAGAAAGAATTATGCTTCCATAGTGTGTAAAGTCCTGTTCGGCAGATGTGGATTGCTGAAGTGACAACATAGTTAGGCAGCAGAACCTTCCAGGCTATAGGCTAAAGCTTTCGGGAAGCCGTTCAAGAGGCAAACGGCAGAAAGAAGGGGTAGAGGCTTTCAAAATC---TCAATGCCTTGTGACCCTGTGGGGCTGACGCCCATAGGATTTCATGAAAACCAAGCAGCCACAGGAAAGATTTAATTAACAATTATTGTCTAACCAGCTATTCAGAAACTGGGCTCTTTGATGTTCAGAAGCAATTTTGTTTTCCTACCAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112741358 425 + 159171411 aaaaaaaaaaaaaaaaaaaaaaaGATcacacacacacacacacacaAAAGAATATCATAAGACAGGTACTCAAATGGCCTCCATGATTACTGACTTGATCCCTGCTTGAAAATATTTCAGAAAGAATTACGCTTCC---------AAAGTCCTGTTCAGCAGATGTGGATTGGTGAAGTGACAACA----TAAACAGCTGAACCTTTCAGGTTATTGGCCAAAGCTTTTGGGAAGCAGTTCATGAAGCAAAAGGCAGAGAGAGGATGTAGAGGCTTTCAAAATCTTGTCATTGCCTTGTGATCCTGTAGGACTGATGCCCACAGGATTTTATGAAAACCATGTGGCCACAGGAAAGGTTTAATTAACAATCACTGTCTAACCAGCTATTCAGAAACTGGGCTCTTTGATGTTCAGAAGCAATTTTGTTTTCCTAAAAT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39313273 369 - 61074082 -ataaataaataaaaaataaaat--------------------------aaaaTTTATA--------------------------------------ATCCCTGTTTGGAAATGTTTCACAAAGAATTATGCTTACATAGCATGTAAAGCACTCTTCATCACATGTTCATGGGTGAAGTGATGGCACAATTCAACAGTTTAACATTTCAGATTATAGGCTAAGGCTTTCAGGAGGCATTCCA----GCAACCCAAAGTCAAAAGGTATAAAGCCTTTTAATATCTTGTCAATGCATTATGACTCTGTAGGGCTGGCACCCATAGAATATCACGAAAATCAAGAAACCGTAGGACAGGTTTAATTTACAATCATTGTCTAACCAACTGTTCAGAACTGAGGTTCTTTGATGTTCATTAGCAATTTTGTTTGCCTAAAAT i canFam3.chr9 C 0 C 0 e mm10.chr11 99484301 1110 + 122082543 I a score=743278.000000 s hg38.chr17_JH159146v1_alt 78707 207 + 278131 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTTGAGGACTTGTGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTCTGGAAATTAGGATTCTTTATTTTTGCCCCACATCACACTTATCTTGGTTGGTAGCAGACTCTCTTCATTATATTGTCCCCTAACTTGCTGAACATTGGGCCAGTGATGGAAGTCCAGTCTCACGCAT s panTro4.chr17 66199242 207 - 82630442 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTTGAGGACTTGTGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTCTGGAAATTAGGATTCTTTATTTTTGCCCCACATCACACTTATCTTGGTTGGTAGCAGACTCTCTTCATTATATTGTCCCCTAACTTGCTGAACATTGGGCCAGTGATGGAAGTCCAGTCTCACGCAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24728584 207 - 73212453 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTCAAGGACTTGCGATGGATGGTAACTC--TAAAAGTCAATTAAATGCTTCTGGAAATTAGGATTCTTTATTTTTGCCCCACATCACACTTATCTTGGTTGGTAGCAGACTCTCTTCATTATATTGTCCCCTAATTTGCTGAACATTGGGCCAATGATGGAAGTCCAGTCTCACACAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47948498 203 - 81552678 ggGAACTGTTTTTCTATCATTTTATCAGAGTCTCGAGGACTTGCGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTCTGGAAATTAGGATTCTTTATTTTTGCCCCACAT----CTTATCTTGGTTGGTAGCAGACTCTCTTCATTACATTGTCCCCTAATTTGCTGAACATTGGGCCAATGATGGAAGTCCAGTCTCACACAT i nomLeu3.chr19 I 810 C 0 s rheMac3.chr16 53060298 207 + 80904711 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTCAAGGACTTGTGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTTTGGAAATTAGGATTCTTTAGTTTTGTCCCACATCATACTTGCCTTGGTTGGTAGCAGACTCTTTTCATTATATTGTCCCCTAATTTGCTGAACATTGGGCCAACGATGGAAGTCCAGTCTCACACAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52582900 207 + 80997621 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTCAAGGACTTGTGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTTTGGAAATTAGGATTCTTTAGTTTTGTCCCACATCATACTTGCCTTGGTTGGTAGCAGACTCTTTTCATTATATTGTCCCCTAATTTGCTGAACATTGGGCCAACGATGGAAGTCCAGTCTCACACAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47627976 207 + 74645514 GGGAActgtttttctatcattttatcaGAGTCTCAAGGACTTGTGATGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTTTGGAAATTAGGATTCTTTAGTTTTGTCCCACATCACACTTGTCTTGGTTGGTAGCAGACTCTTTTCATTATATTGTCCCCTAATTTGCTGAACATTGGGCCAACGATGGAAGTCCAGTCTCACACAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9896054 207 - 75148670 GGGAACTGTTTTTCTATCATTTTATCAGAGTCTCGAGGACTTGTGGTGGATGGTAACTC--TAAAAGTCAGTTAAATGCTTCTGGAAATTAGGATTCTTTAGTTTTGTCCCACATCATACTTGTCTTGGTTGGTAGCAGACTCTTTTCATTATATTGTCCCCTAATTTGCTGAACATTGGGCCAATGATGGAAGTCCAGTCTCACACAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112741783 209 + 159171411 GGGAATTGTTTTTCTATCATTTTGTCGGAGTCTTGAGGACCTGAGATGGATGGTAACTCTTTAAAAGTCAGTTAAATGCTTCTGGGAATTAGGATTCTTTATTTTTGCCCCACATCACATTTATCTTGGTTGGTAGCAGACTCTTTTCATTATAGTGTCCCCTGATTTGGTGAATGTTGGGCCAATGATGGAAGTCCAGTCTCACACAT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39313642 207 - 61074082 GGGGATTGCTTTTC--TTATTGCATCAGAGTCTCAGGGACTTCAGATGGATGGTAACTTTTTCAAAGTCATTTAAATGCTTATGGAAATTAAGATTCTTCAGTTTTGCCACTAGTTTTATTTACCTTGGTTAGTGGCAAGTTCTCTTTATTCTACTGTCCTCCAGTTTTTTGCACATTGGGTCAACGAAGGAAGTTCAAGCTCATGCAT i canFam3.chr9 C 0 C 0 e mm10.chr11 99484301 1110 + 122082543 I a score=2834192.000000 s hg38.chr17_JH159146v1_alt 78914 746 + 278131 TGATTCTTATAGTAAC--ATTAACAAGCACATCTAGGTAAACATTGTGTATTAACAAAACTGTTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGACTAGCTAACCTTGAAATTAG--AAACATTAGATATTTGTATGTTTTTCTAAAGACTATTTAGGGTGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTGCAGGCTAAGAGCTGTGCTTATTAGCAGGTGTTCCTGGGGAGTTGTACCTGCTCATGGTGCTTCTTCATGAGAATGAGCTCTTTCCTCATTCCTTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTTTCTTAAAGGAGTGTTCATTTTCATACCTTTGGTGAGAAGGAAGAGAAGA--GTGCACTCA-TTGTTGGAAGGCCATGGTTTTTGAAAGGATTCATTTTCATTTAGAGGTGAATCTTTTACTTTTTAGGTTTAAAGAGAGCAAATGAATACATATAGGATGTCTTTTTTATGCCA----------------------------------------------------------------GTTTCATGCTACACTTCTCCATGATGGTGACTCAATGTCAAC----------------TTTTAAATTGagtagggagaataggataataaacagtcatatacccattatctatatttagcaaccatgaatgttttgccata-------------------tttgcttcatct-----at-ttcatt---------------------------------------------------------------------------------gctgaa s panTro4.chr17 66199449 746 - 82630442 TGATTCTTATAGTAAC--ATTAACAAGCACATCTAGGTAAACATTGTGTATTAACAAAACTGTTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGACTAGCTAACCTTGAAATTAG--AAACATTAGATATTTATATGTTTTTCTAAAGACTATTTAGGGTGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCAAATCAGCCTGAGATGTGCAGGCTAAGAGCTGTGCTTATTAGCAGGTGTTCCTGGGGAGTTGTACCTGCTCATGGTGCTTCTTCATGAGAATGAGCTCTTTCCTCATTCCTTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTTTCTTAAAGGAGTGTTCATTTTCATACCTTTGGTGAGAAGGAAGAGAAGA--GTGCACTCA-TTGTTGGAAGGCCATGGTTTTTGAAAGGATTCATTTTCATTTAGAGGTGAATCTTTTACTTTTTAGGTTTAAAGAGAGCAAATGAATACATATAGGATGTCTTTTTTATGCCA----------------------------------------------------------------GTTTCATGCTACACTTCTCCATGATGCTGACTCAATGTCAAC----------------TTTTAAATTGagtagggagaataggataataaacagtcatatacccattacctatatttagcaaccatgaatgttttgccata-------------------tttgcttcatct-----at-ttcatt---------------------------------------------------------------------------------gctgaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24728791 745 - 73212453 TGATTCTTATAGTAAC--ATTAACAAGCACATCTTGGTAAACATTGTGTGTTAAC-AAACTGCTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGACTAGCTAACCTTGAAATTAG--GAACATTAGATATTTATATGTTTTTCTAATGACTATTTAGGGTGAAGGACAAGGGGATTAGCATCCAGGTGATGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTGCAGGCTAAGAGCTGTGCTCATTAGCAGGTGTTCCTGGGGAGTCGTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCTTTCCTCATTCCCTCTACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTTTCTTAAAGGAGTGTTCATTTTCATACCTTTGGTGAGAAGGAAGAGAAGA--GTGCACTCG-TTGTTGGAAGGCTGTGGTTTTTGAAATGATTCATTTTCATTTAGAGATGAATCTTTTACTTTTTAGGTTTAAAGAGAGCAAATGAATACATATAGGATATCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGTCAAC----------------TTTTAAATTGagtagggagaataggataataaacagtcatatacccatcacctatatttagcaaccatgaatgttttgccata-------------------tttgcttcacct-----at-TTCATt---------------------------------------------------------------------------------gctgaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47948701 746 - 81552678 TGATTCTTATAGTAAC--ATTAACAAGCACATCTCGGTAAACATTGTGTGTTAACAAAACTGTTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGGCTGGCTAACCTTGAAATTAG--AAACATTAGATATTTATATGTTTTTCTAATGACTATTTAGGGTGAAGGACAAGCGGATTGGCATCCAGATGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTGCAGGCTAAGAGCTGTGCTCATTAGCAGGTGTTCCTGGGGAGTCGTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCTTTCCTCATTCCCTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTTTCTTAAAGGAGTGTTCATTTTCATACCTTTGGTGAGAAGGAAGAGAAGA--GTGCACTCA-TTGTTGGAAGGCCGTGGTTTTTGAAAGGATTCATTTTCATTTAGAAGTGAATCTTTTACTTTTTAGGTTTAAAGAGAGCGAATGAATACGTATAGGATGTCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGTCAAC----------------TTCTAAATTGagtagggagaataggataataaacagtcatatacccatcacctatatttagcaaccatgaatgttttgccata-------------------tttgcttcaCCT-----AT-TTCATt---------------------------------------------------------------------------------gctgaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53060505 744 + 80904711 TGATTCTTATAGTAACATATTAACAAGCACATCTAGGTAAACATTGTATGTTAACAAAACTGTTGACCA-------------ATTCATCATGAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGAGTAGCTCACCTTGAAATTAG--AAACTTTAGATATTTGTATGTTTTTCTAATGACTATTTAGGGTGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTTCATGCTAAGACCTGTGTTCATTACCAGGAGTTCCTGGGGAGTCCTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCCTTTCTCATTCCCTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTCTCTTAAAGGAGTGTTCATTTTCATATCTTTGGTGAGAAG-----GAAGA--GTGCACCCGTTTGTTGGAAGGTCATGGTTTTTGAAAGGATTCATTTTCATTTAGAGGTGAATCTTTTACTTATTAGGTTTAAAGACAGATGATGAATACATATAGGATGTCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGCCAAC----------------TTTTAAATTGagtagggagaacaggataataaacagtcacatacccatcacctacatttagcaaccgtgaatgttttgctgta-------------------tttactttgcct-----at-TTCATt---------------------------------------------------------------------------------gctgaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52583107 749 + 80997621 TGATTCTTATAGTAACATATTAACAAGCACATCTAGGTAAACATTGTGTGTTAACAAAACTGTTGACCA-------------ATTCATCATGAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGAGTAGCTCACCTTGAAATTAG--AAACTTTAGATATTTGTATGTTTTTCTAATGACTATTTAGGGTGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTTCATGCTAAGACCTGTGTTCATTACCAGGAGTTCCTGGGGAGTCCTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCCTTTCTCATTCCCTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTCTCTTAAAGGAGTGTTCATTTTCATATCTTTGGTGAGAAGGAAGAGAAGA--GTGCACCCGTTTGTTGGAAGGTCATGGTTTTTGAAAGGATTCATTTTCATTTAGAGGTGAATCTTTTACTTATTAGGTTTAAAGACAGATGATGAATACATATAGGATGTCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGCCAAC----------------TTTTAAATTGagtagggagaacaggataataaacagtcatatacccattacctacatttagcaaccgtgaatgttttgctgta-------------------tttactttgcct-----at-ttcatt---------------------------------------------------------------------------------gctgaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47628183 749 + 74645514 TGATTCTTATAGTAACATATTAACAAGCACATCTAGGTAAACATTGTGTGTTAACAAAACTGTTGACCA-------------ATTCATCATGAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGAGTAGCTAACCTTGAAATTAG--AAACTTTagatatttgtatgtttttctaaTGACTATTTAGGGTGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTTCATGCTAAGACCTGTGTTCATTACCAGGAGTTCCTGGGGAGTCCTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCCTTCCTCATTCCCTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTCTCTTAAAGGAGTGTTCATTTTCATACCTTTggtgagaaggaagagaaga--gtgcACCCGTTTGTTGGAAGGTCATGGTTTTTGAAaggattcattttcatttagagGTGAATCTTTTACTTATTAGGTTTAAAGACAGATGATGAATACATATAGGATGTCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGCCAAC----------------TTTTAAATTGAGTAGGGAGAACAGGATAATAAACAGTCACATACCCATCACCTACATTTAGCAACCGTGAATGTTTTGCCGTA-------------------TTTACTTTGCCT-----AT-TTCATT---------------------------------------------------------------------------------GCTGAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9896261 749 - 75148670 TGATTCTTATAGTAACATATTAACAAGCACATCTAGGTAAACATTGTGTGTTAACAAAACTGTTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGTTGTATTTGACATGTGAGTAGCTAACCTTGAAATGAG--AAACTTTAGATATTTGTATGTTTTTCTAATGACTATTTAGGGCGAAGGACAAGGGGATTGGCATCCAGGTGGTGGTTTCTTCTG-------TAGCTGTCGAATCAGCCTGAGATGTTCATGCTAAGAGCTGTGTTCATTACCAGGAGTTCCTGGGGAGTCCTACCTGTTCATGGCGCTTCTTCATGAGAATGAGCTCCTTCCTCATTCCCTCCACCTCCTGTTCTAGATCTGTTGTGACAATGGTCAGGTTGTCTAAGGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTCTCTTAAAGGAGTGTTCATTTTCATACCTTTGATGAGAAGGAAGAGAAGA--GTGCACCCGTTTGTTGGAAGGTCATGGTTTTTGAAAGGATTCATTTTCATTTAGAAGTGAATCTTTTACTTGTTAGGTTTAAAGACAGATGATGAATACATATAGGATGTCTTTTGTATGTCA----------------------------------------------------------------GTTTCATGCTACACTTTTCCATGATGGTGACTCAATGCCAAC----------------TTTTAAATTGagcagggagaacaggataataaacagtcacatacccatcacctatatttagcaaccgtgaatgttttgccata-------------------tttactttgcct-----at-ttcatt---------------------------------------------------------------------------------gctgaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112741992 749 + 159171411 TGATTCCTATAGTAACATACTAATAAGCACATCTAGGTAAACATTGTATGTTAACAAAACTGTTGACCA-------------ATTCATCATTAATTATGATTGCATTTTGGTTGCTCTATTTGACATGTGAGTAGCTAACCTTGAAATTAG--AAACATTAGATATTTATATGTTTTTTTAATGACTATTTAGGATGAAGGACAAGGGGATTGGCATCCAGGTAGTGGTTTCCACTA-------TAGCTGTCGAATCAGCCTGAGGTGTGCAGGCTGAGAGCTGCGCTCGCTGCCAGGAGTTCCGGGGGAGTCCTACCTGTTCATGGTGCTTCTTCATGAGAATGAGCTCTTTCCTCATTCCCTCCACCTCCTGTTCTAGGTCTGTTGTGACAATGGTCAAGTTGTCCAAAGTCCTTCGGAGGCCCTCGACTTCAATTTCCAAGTCTTTCTTAAAGGAGTGTTCATTTTCATACCTTTCGTGAGAAGAAAGAGAAGAGTGTGCACCTG-TTGTTGGAAGGCCACGGTTTTTGAAAGGATTCACTTTCATTTAGAGGTGAATCTTCTACTTTTTGGGTTTAATGAGAGCAAATGAATACATACAGGATGTCTTTTATATGTCA----------------------------------------------------------------GTTTCATGCTACATTTTTCCATAATGGTGACTCAATGCCAAT----------------TTTTCAATTGagcagggagtgtagaataataagcagtcatatacccatcacctatgtttagcagccatcaata-tttgccata-------------------tttgtttcacct-----at-TTCATT---------------------------------------------------------------------------------GCTGAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99485411 781 + 122082543 TGATTCTTACAGTATTATACTAACAAG----TCTAGGTAACCAGTGTGTGATAAC-AGATTATTAATTATTGTTATTTTGCCAATCACTGGTAATTATGATTGTA-CTTGGAGGTTTTGTTTAACATCTAAGAAGACAACCTTTAAATTGGAAAAAAAATCAATGTTTCTGTGGTTCCTTA--------------TGAGGAAC-------CTGGCACTCAGGTGGTGGTCCCTCCTG-------TTGCTATGGAGTCACACTGGACTGAG-AAGTCAGAAGCAGAGAGGGTTCCCAGGAG-CCCAGGGCGGCCCCACCTGCTCATGGCGTTTCTTCATGAGGATCAGCTCTTTCCTCATCCCCTCCACCTCCTGTTCCAGGTCTGTTGTGACAATGGTCAGATCATCCAAGGTCTTTCGGAGGCCCTCAACTTCAATTTCCAAGTCTTTCTTTAACGAGTGTTCGTTTTCAAACCTTTGGTGAGA--GAGGGGAAGA--GCA-ACTTG-TTGTTGGAAGATGGAGGGCATGGCCAGGGTCCACTTGGGTTTAGAGGGGATGCTCTTATTTTTGAG---------CGACTGACTGATACATACAGGACATTTTTAGCACATCGATACATTGATACAGGACATATCATATGTATATGTATATATAGATACACACAGATATAGCACATTGTTTCATGCTATGCTTGTCTGTGGTAGTGACTCAGTGCCAAC----------------TTTT-AATTGAGTA--GAGAATAGAAT-ACACACAGCCAGGTATCCGT-ACCTAGCTTTACGACCCATGAATATGTT-TTATG-------------------TGTGTTTCATCT-----ATATACATT---------------------------------------------------------------------------------GATGAA i mm10.chr11 I 1110 I 484 s canFam3.chr9 39313849 860 - 61074082 TTATTCTTACAGTACTATATTAACAAATAAGTCGAGGTAAACATTGTGTATTAGCAAAATTGTTGACTG-------------ATTTGTCATTAATTATGATTATATTTTGGCTGTTGGATTTGACAC-TGAATAGATAAGCCTGAAGCTGG--AAAAATTAGATGTTTATATGGTTCCTTA-TAATTACTTAGGTTGAAGGACACTAGGACCGGCATTCAGATGATGGTTTCTTCTGGGCTTCTGGGCTATTGAATCATC--GGAAAGTGCCTGTTAAAAGCTGTGCTAGTTACCAGGAGGTCCTGGGTAGTCCTACCTGCTCATGTCGCTTCTTCATGAGGATAAGCTCTTTCCTCATCCCCTCAACCTCCTGTTCCAAATCTGTTGTGACAATGGTCAGATCATCCAAGGTCTTTCGGAGACCTTCAACTTCAATTTCTAGATCTTTCTTGAAGGAGTGTTCATTTTCATACCTTTGGTTGGAAGGAAGAGAAGA--ATACACCTA-TTGTTGGAAGACTATGG-CCTTGTAAGGATTCACTTCAGTCTGGAGGTGAATCTCTTAGTTTTTAGGTTTAATAAGAGCAAATGAACATATGCTGCACATCTTTCATATGTCT----------------------------------------------------------------GTTTCATGC-AGGTTTTTCTGTGATGAAGACTTGTTAATAACAATGTTGTTATGTTTTTTTTAAATT--------AGGATGAAATAATAAACAGTCCtatgcccatcacttagactc--taactgttaacattttgcttcatctatactctattttgtattttattttattttttaaat-tttatttatttattcgagagagagaaagagagagaagcaggagcctgatgcgggactcaatcccaggactccaggatcatgccctgggctgaa i canFam3.chr9 C 0 I 43 a score=30291.000000 s hg38.chr17_JH159146v1_alt 79660 8 + 278131 gtatttta s panTro4.chr17 66200195 8 - 82630442 gtatttta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24729536 8 - 73212453 gtatttta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47949447 8 - 81552678 gtatttta i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061249 8 + 80904711 gtatttca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52583856 8 + 80997621 gtatttca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47628932 8 + 74645514 GTATTTCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897010 8 - 75148670 gtatttca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112742741 8 + 159171411 Gtatttta i calJac3.chr5 C 0 I 371 s canFam3.chr9 39314752 8 - 61074082 gtatttta i canFam3.chr9 I 43 C 0 e mm10.chr11 99486192 484 + 122082543 I a score=247565.000000 s hg38.chr17_JH159146v1_alt 79668 93 + 278131 aagcagattatagatgtgatgacattttaagactaaatacttcaggatgcatcttttaagaaaaatatattt---------taaaataaacaggccgggcac s panTro4.chr17 66200203 93 - 82630442 aagcagattatagatgtgatgacattttaagactaaatacttcaggatgcatcttttaagaaaaatatattt---------taaaataAACAggccgggcac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24729544 93 - 73212453 aagcagattatagacgtgatgacaTTTTAAGACTAAATACTTCAGGATGCATCTTTTAAGaaaaatatattt---------taaaataaaCTggccgggcac i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47949455 93 - 81552678 aagcagattatagacgtgatgacaTTTTAAGACtaaatacttcaggatgcatcttttaagaaaaatatattt---------taaaataaacagcccaggcac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061257 88 + 80904711 aagcagattatagacatgatgacaTTTTAAGACtaaatacttcaggatgcatcttttaagaaaaatatattt--------------taaacaggctgggcac i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52583864 93 + 80997621 aagcagattatagacatgatgacattttaagactaaatacttcaggatgcatcttttaagaaaaatatattt---------taaaataaacaggctgggcac i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47628940 93 + 74645514 AAGCAGATTATAGACATGATGACATTTTAAGACTAAATACTTCAGGATgcatcttttaagaaaaatatattt---------taaaataaacaggctgggcac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897018 93 - 75148670 aagcagattatagacgtgatgacattttaagactaaatacttcaggatgcatcttttaagaaaaatatattt---------taaaataaacaggctgggcac i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39314760 99 - 61074082 aactgaattatagacattacaacacttaacccctaagtacttaggaatatatcttttaaaaacaagaattttcATTAAGAATGAAGCAAAAGg---gggcac i canFam3.chr9 C 0 I 268 e mm10.chr11 99486192 484 + 122082543 I e calJac3.chr5 112742749 371 + 159171411 I a score=377839.000000 s hg38.chr17_JH159146v1_alt 79761 158 + 278131 ggtggctcacacctgtaatcccagtactttgggaggctgaggcgggcggatcacgaggccaagagattgagaccatcctggccaacatggtgaaaccctgttgctactaaaaatgcaaaaattagctgggcatggtggtgtgcacctatagtcccagc s panTro4.chr17 66200296 157 - 82630442 ggtggctcacacctgtaatcccagtactttgggaggctgaggcgggcggatcacgaggccaagagattgagaccatcctggccaacatggtgaaaccctgttgctactaaaaatgcaaaaattagctgggcatggt-gtgtgcacctatagtcccagc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24729637 158 - 73212453 ggtggctcacacctgtaatcccagtactttgggaggctgaggcgggcggatcatgagggcaagagattgagaccatcttgaccaacgtggtgaaaccctgtctctactaaaaatgcaaaaattagctgggcatggtggtgtgcacctatagtcccagc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47949548 158 - 81552678 agtggctcacacctgtaatcccagtactttgggaggctgaggcgggcggattatgaggccaagagattgagaccgtactggctaacatggtgaaaccctgtctctactaaaaatgcaaaaattagctgggcatggtggtgtgcacctatagtcctagc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061345 158 + 80904711 ggtggctcatgcctgtaatcccagtactttgggaggctgaggtgggcagatcatgaggccaagagattgagaccgtcctggccaacatggtgaaacgctgtctctactaaaaatataaaaattagctgggcgtggtggcgcgcgcctgtagtcccagc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52583957 158 + 80997621 ggtggctcatgcctgtaatcccagtactttgggaggctgaggcgggcagatcatgaggccaagagattgagaccgtcctggccaacatggtgaaacgctgtctctactaaaaatataaaaattagctgggcgtggtggcgcgcacctgtagtcccagc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629033 158 + 74645514 ggtggctcatgcctgtaatctcagtactttgggaggctgaggcgggcagatcatgaggccaagagattgagaccgtcctggccaacatggtgaaacgctgtctctactaaaaatataaaaattagctgggcgtggtggcgcgcacctgtagtcccagc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897111 158 - 75148670 ggtggctcatgcctgtaatcccagtactttgggaggctgaggcgggcagatcatgaggccaagagattgagaccgtcctggccaacatggtgaaacgctgtctctactaaaaatataaaaattagctgggcgtggtggcgcacacctgtagtcccagc i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39314859 268 - 61074082 I e mm10.chr11 99486192 484 + 122082543 I e calJac3.chr5 112742749 371 + 159171411 I a score=254575.000000 s hg38.chr17_JH159146v1_alt 79919 134 + 278131 tacttgggaggctg-aggcaggagaatcgcttgaacctggaaggcagaggttgca---------gtgagc----------------cgagatcacgccactacactaca-gcctggcaacagagcaagactccgtctcaa---------aaataaacaaataaataaata----------- s panTro4.chr17 66200453 134 - 82630442 tacttgggaggctg-aggcaggagaatcgcttgaacctggaaggcagaggttgca---------gtgagc----------------cgagatcacgccactacactcca-gcctggcaacagagcgagactccgtctcaa---------aaataaataaataaataaata----------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24729795 134 - 73212453 taattgggagcctg-aggcaggagaattgcttgaacctggaaggcagaggttgca---------gtgagc----------------tgagatcaagccactacactcca-gcctggcaacagagtgagactccatctcaa---------aaataaataaataaataaata----------- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47949706 134 - 81552678 tacttgggaggctg-aggcaggagaattgcttgaacctggaaggcagaggttgca---------gtgagc----------------caagatcaagccactacactcca-gcctggcaacagagcgagactccatctcaa---------aaataaataaatacataaata----------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061503 111 + 80904711 tacttgggaggctg-aggcaggagaattgcttgaacctgagaggcggaggttgca---------gtgagc----------------caagatcgcgccactacactcca-gcctg-------------------TCTCAA-------------aaataaataaataaata----------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584115 111 + 80997621 tacttgggaggctg-aggcgggagaattgcttgaacctgagaggcggaggttgca---------gtgagc----------------caagatcgcgccactacactcca-gcctg-------------------TCTCAA-------------aaataaataaataaata----------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629191 115 + 74645514 tacttgggaggctg-aggcgggagaattgcttgaacctgagaggcggaggttgca---------gtgagc----------------caagatcacgccactacactcca-gcctg-------------------tctcaa---------aaataaataaataaataaata----------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897269 115 - 75148670 tacttgggaggctg-aggcaggagaattgcttgaacctgagaggcggaggttgca---------gtgagc----------------caagatcgcgccactacactcca-gcctg-------------------TCTCAA---------aaataaataaataaataaata----------- i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39315127 178 - 61074082 tacctgaggggcaatgggtaggggaaacaggtga---tgggagttaaggagtgcacttgtgatgatgagcactgggtgatgtatagaagtgttgaatcagtatattctacacctgaaaggaatatgacactgtatgttaactatactagaattaaaataagaaAAAAACCCCAGTTTTCTA i canFam3.chr9 I 268 C 0 e mm10.chr11 99486192 484 + 122082543 I e calJac3.chr5 112742749 371 + 159171411 I a score=16562.000000 s hg38.chr17_JH159146v1_alt 80053 14 + 278131 ----aataaataaataaa s panTro4.chr17 66200587 14 - 82630442 ----aataaataaataaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24729929 14 - 73212453 ----aataaataaataaa i ponAbe2.chr17 C 0 I 646 s nomLeu3.chr19 47949840 14 - 81552678 ----attaaataaataaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061614 10 + 80904711 ----agtaaataaa---- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584226 10 + 80997621 ----agtaaataaa---- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629306 10 + 74645514 ----agtaaataaa---- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897384 10 - 75148670 ----agtaaataaa---- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112743120 14 + 159171411 ----aagaaaaagatact i calJac3.chr5 I 371 C 0 s canFam3.chr9 39315305 14 - 61074082 AAAAAAAAaaaaaa---- i canFam3.chr9 C 0 C 0 e mm10.chr11 99486192 484 + 122082543 I a score=1943.000000 s hg38.chr17_JH159146v1_alt 80067 4 + 278131 taaa---------------- s panTro4.chr17 66200601 4 - 82630442 taaa---------------- i panTro4.chr17 C 0 M 634 s nomLeu3.chr19 47949854 1 - 81552678 ---a---------------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061624 4 + 80904711 taaa---------------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584236 4 + 80997621 taaa---------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629316 4 + 74645514 taaa---------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897394 4 - 75148670 taaa---------------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112743134 4 + 159171411 taaa---------------- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39315319 19 - 61074082 -aaaaaacccagttttctaa i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24729943 646 - 73212453 I e mm10.chr11 99486192 484 + 122082543 I a score=389310.000000 s hg38.chr17_JH159146v1_alt 80071 201 + 278131 ataaacataa------cactacacctaaaca-ttaataacaaccctttaatatcatctaattcttgattcatattcaaacttccccatactataa--tgtgc-tttatatctgatttgtttaaactaaggttcattcaagtaacacacagtgcatttgccgttgctatgccttttCATTA--------TAAGATTTTAGATGCGGGTAATGGCAAGATG s nomLeu3.chr19 47949855 203 - 81552678 ataaacataa------cactacacctaaaca-ttaataataaccctttaatatcatctaattcttgattcatattcaaatttccccatactataacatgtgc-tttatatctgatttgtttaaactaaggttcattcaagtaacacacagcgcatttgccattgctatgccttttCGTTA--------TAAGATTTTAGATGCGGGTAATGGCAAGATG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061628 199 + 80904711 ataaacataa------cactacacctaaaca-ttaataacaaccctttaatatcatctaattcttgattcatattcaaatttcccc-----ataacatgtgcttttatatctggtttgtttaaactaaggttcattcaagtaacacacagtgcatttgctgttgctatgccttttCATTA--------TAAGATTTTAATTCCAGGTAATGGCAAGACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584240 199 + 80997621 ataaacataa------cactacacctaaaca-ttaataacaaccctttaatatcatctaattcttgattcatattcaaatttcccc-----ataacatgtgcttttatatctggtttgtttaaactaaggttcattcaagtaacacacagtgcatttgctgttgctatgccttttCATTA--------TAAGATTTTAATTCCAGGTAATGGCAAGACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629320 198 + 74645514 ataaacataa------caccacacctaaaca-ttaataacaaccctttaataTCATCTAATTCTTGAttcatattcaaatttcccc-----ATAACATGTGC-TTTATATCTGGTTTGTTTAAACTAAGGTTCATTCAAGTAACACACAGTGCATTTGCTGTTGCTATGCCTTTTCATTA--------TAAGATTTTAGTTCCAGGTAATGGCAAGaca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897398 202 - 75148670 ataaacataa------cactacacctaaaca-ttaataacaaccctttaatatcatctaattcttgattcatattcaaatttccccatactataacatgtgc-tttatatctggtttgtttaaactaaggttcattcaagtaacacacagtgcatttgctgttgctatgccttttCA-TA--------TAAGATTTTAGTTCCAGGTAATGGCAAGACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112743138 201 + 159171411 --aattataa------tactacacctaaact-ttaataataacactttaatatcatctacttcttgattcatattcaaatttccccacactataacatatgc-tttatatctggtttgtttaaactaaggttcattcaagtaacacacgttgcatttgccattgctatgccttttCATTA--------CAAGATTCTAGACATGGGTCATGGCAAGATG i calJac3.chr5 C 0 I 1 s canFam3.chr9 39315338 200 - 61074082 ataagcataattacattatcacacctaaagagctaataataactctttaatatcatctaattcttggttcatattcaaactttcccATGCTACAAGGTGTAT-TTTATATCTAGGTTGTTTAGA-----GTTCAGTCAAGT------------ATTCATTCCTATTATG-CTTTTAATTATATTTTATTAAGATGTTACATGTGGCTAACAGTGAGATA i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24729943 646 - 73212453 I e mm10.chr11 99486192 484 + 122082543 I e panTro4.chr17 66200605 634 - 82630442 M a score=8373.000000 s hg38.chr17_JH159146v1_alt 80272 11 + 278131 AGttttccttt s nomLeu3.chr19 47950058 11 - 81552678 AGttttccttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061827 9 + 80904711 AGttttcc--t i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584439 8 + 80997621 AGttttcc--- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629518 8 + 74645514 agtttcct--- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897600 9 - 75148670 AGttttcc--t i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39315538 11 - 61074082 AGTTTTCCTTT i canFam3.chr9 C 0 I 23 e ponAbe2.chr17 24729943 646 - 73212453 I e mm10.chr11 99486192 484 + 122082543 I e calJac3.chr5 112743339 1 + 159171411 I e panTro4.chr17 66200605 634 - 82630442 M a score=71897.000000 s hg38.chr17_JH159146v1_alt 80283 60 + 278131 ttttttttttttttgagatggagtctcactctgttgccaggctggagtgttagtggcgtg s nomLeu3.chr19 47950069 59 - 81552678 ttttttttttttt-gagatggagtctcactctgttgccaggctggagtgttagtggcgtg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061836 58 + 80904711 ttttttttttttt-gagacggagtctcactctgttgccaggctggagtg-cagtggcgcg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584447 57 + 80997621 -tttttttttttt-gagacggagtctcactctgttgccaggctggagtg-cagtggcgcg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629526 57 + 74645514 -tttttttttttt-gagatggagtctcactctgttgccaggctggagtg-cagtggcacg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897609 58 - 75148670 ttttttttttttt-gagacagagtctcactctgttgccaggctggagtg-cagtggcgcg i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24729943 646 - 73212453 I e canFam3.chr9 39315549 23 - 61074082 I e mm10.chr11 99486192 484 + 122082543 I e calJac3.chr5 112743339 1 + 159171411 I e panTro4.chr17 66200605 634 - 82630442 M a score=188541.000000 s hg38.chr17_JH159146v1_alt 80343 108 + 278131 atcttggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggcgtgtgccaccatgcccagctaattttt s panTro4.chr17 66201252 108 - 82630442 atcttggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggcgtgtgccaccgtgcccagctaattttt i panTro4.chr17 M 634 C 0 s nomLeu3.chr19 47950128 108 - 81552678 attttggctcactgctacctccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggcgtgtgccaccatgcccagctaattttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061894 103 + 80904711 atttcggctcactgcaacatccatctcctgggttcaagtgattctcctgc-----cctcatgagcagctgggactacaggcgtgcgccaccatgcccagctaattttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584504 103 + 80997621 atttcggcttactgcaacatccatctcctgggttcaagtgattctcctgc-----cctcctgagcagctgggactacgggcgtgcgccaccatgcccagctaattttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629583 108 + 74645514 atttcggctcactgcaacgtccatctcctgggttcaagtgattctcctgcctcagcctcctgagcagctgggactacaggcgtgcgccaccatgcccagctaattttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897667 108 - 75148670 atttcggctcactgcaacgtccatctcctgggttcaagtgattctcctgcctcagcctcctgagcagctgggactacaggcatgcgccaccatgcccagctaattttt i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24729943 646 - 73212453 I e canFam3.chr9 39315549 23 - 61074082 I e mm10.chr11 99486192 484 + 122082543 I e calJac3.chr5 112743339 1 + 159171411 I a score=183791.000000 s hg38.chr17_JH159146v1_alt 80451 80 + 278131 gtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------tgacctcgtgatccgcccgccttgg s panTro4.chr17 66201360 80 - 82630442 gtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------tgacctcgtgatccgcccgccttgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24730589 80 - 73212453 gtatttttagtagagatgaggtttcaccatctaggccaggatggtatccatttct--------tgacatcgtgatccacccgcctcgg i ponAbe2.chr17 I 646 C 0 s nomLeu3.chr19 47950236 88 - 81552678 gtatttttagtagagatggggtttcactatgttgaccaggatggtcttgatctcttgatctcgtgatctcgtgatccgcccgcctcgg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53061997 80 + 80904711 gtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------taacctcgcgatccgtccgccttgg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584607 80 + 80997621 gtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------taacctcgtgatccgtccgccttgg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629691 79 + 74645514 gta-ttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------taacctcgtgatctgtccgccttgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897775 80 - 75148670 gtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctct--------taacctcgtgatccgtctgccttgg i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39315549 23 - 61074082 I e mm10.chr11 99486192 484 + 122082543 I e calJac3.chr5 112743339 1 + 159171411 I a score=109046.000000 s hg38.chr17_JH159146v1_alt 80531 48 + 278131 cctcccaaagtgctgggattacaggtgtgagccaccgcgccccgccGA s panTro4.chr17 66201440 48 - 82630442 cctcccaaagtgctgggattacaggtgtgagccaccgcgccccgccGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24730669 48 - 73212453 cctcccaaagtgctgggattacaggtgtgagccactgcgccccgccGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47950324 48 - 81552678 cttcccaaagtgctgggattacaggtgtgagccaccgcgccccgccGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53062077 48 + 80904711 cctgccaaagtgctgggattacaggcttgcgccaccgcgcccggccAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584687 48 + 80997621 cctcccaaagtgctgggattacaggcgtgcgccaccgcgcccggccAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629770 48 + 74645514 cctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897855 48 - 75148670 cctcccaaagtgctgggattacaggtgtgagccaccgcgcccggccGA i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39315572 9 - 61074082 CCCCCCAAA--------------------------------------- i canFam3.chr9 I 23 C 0 e mm10.chr11 99486192 484 + 122082543 I e calJac3.chr5 112743339 1 + 159171411 I a score=117068.000000 s hg38.chr17_JH159146v1_alt 80579 38 + 278131 GTTTTCCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCGAAC s panTro4.chr17 66201488 38 - 82630442 GTTTTCCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCGAAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24730717 38 - 73212453 GTTTTCCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCGAAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47950372 38 - 81552678 GTTTTCCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCGAAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53062125 38 + 80904711 GTTTTTCTTTTGTAAAGCAAA----------CAAACAAAAAC-CGGAAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584735 38 + 80997621 GTTTTTCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCGAAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629818 38 + 74645514 gtttttcttttgtaaagcaaa----------caaacaaaaac-ccgaAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897903 38 - 75148670 ATTTTTCTTTTGTAAAGCAAA----------CAAACAAAAAC-CCAAAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112743340 38 + 159171411 GTTTTCCTTTTGTAAAGCAAA----------TGAGAAAGAAC-CTGAAC i calJac3.chr5 I 1 C 0 s canFam3.chr9 39315581 37 - 61074082 ------------TAAAGCAAAACAAAAACAGCAAATGAAAACTCCCCAC i canFam3.chr9 C 0 C 0 e mm10.chr11 99486192 484 + 122082543 I a score=908131.000000 s hg38.chr17_JH159146v1_alt 80617 230 + 278131 AACCCTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGCACAAAAGGTTATCTCACTTGGACACACCCACACATGACCGCTGCATGTCTGTCCTCTAGCTTCCTGAATATTTGACTTGTTAGTACAGACAACTTCTTGTTCT s panTro4.chr17 66201526 222 - 82630442 AACCCTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGT--------TTATCTCACTTGGACACACCCACACATGACCGCTGCATGTCTGTCCTCTAGCTTCCTGAATATTTGACTTGTTAGTACAGACAACTTCTTGTTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24730755 222 - 73212453 AACACTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATAATCTGAGCGTTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGT--------TTATCTCACTTGGACACACCCACACATGATCGCTGCATGTCTGTCCTCTAGCTTCCTGAATATTTGACTTGTTAGTACAGACAACTTCTTGTTCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47950410 223 - 81552678 AACACTGTGAAGAAAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATAATCTGAGCGTTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGG--------TTTTCTCACTTGGACACACCCACGCATGACCGCTGCATGTCTGTCCTCTAGCTTCCTGAATATTTGACTTGTTAGTACAGACAACTTCTTGTTCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53062163 222 + 80904711 AACACTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGGATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGG--------TTATCTTGCTTGGACACACCCACACATGACCGCTGCATGTCTGTCCTTTAGCTTCCTGAATATTTGACTTGTTAGTACAGACCACTTCTTGTTCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584773 222 + 80997621 AACACTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGGATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGG--------TTATCTTGCTTGGACACACCCACACATGACCGCTGCATGTCTGTCCTTTAGCTTCCTGAATATTTGACTTGTTAGTACAGACCACTTCTTGTTCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47629856 222 + 74645514 AACACTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGGATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGG--------TTATCTTGCTTGGACACACCCACACATGACCACTGCATGTCTGTCCTTTAGCTTCCTGAATATTTGACTTGTTAGTGCAGACCACTTCTTGTTCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9897941 222 - 75148670 AACACTGTGAAG-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGGATAATCTGAGCATTGGTCATCTTACCATCCACTATCTGTAAAACATGCACAAAAGG--------TTATCTTGCTTGGACACACCCACACATGACCACTGCATGTCTGTCCTTTAGCTTCCTGAATATTTGACTTGTTAGTACAGACCACTTCTTGTTCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112743378 221 + 159171411 AAGACTGTGAAA-AAGGAACTTACTTGAGGTTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATAATCTGAGCATTGGTCATCTTACCATCCACAATCTGTAAAACATGCACCAGAAG--------TTATCTCACTTGGACACACCCA-GCATGGCCTCTGCACGTCTGTCCTCGACTTTCCTGAATATTTGACTTGTTAGTACAGACAACTTCTTGTTCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99486676 221 + 122082543 AACTCTGTGAGG-AAGGGACTTACTTCAGGTTGAAGTCATCCACTGCCATCCTGGCGTTGTCAATGAGCACGACAATGTGGGCATTGGCCATCTTACCGTCCACTATCTGTAAAATATGTTCACGGAA--------TTATTCCAGTTGGACAGATCCAGCCATGACAGCAGTGTGTCTGCATCCAGGTTTCTTCCACCAGTGACTT-TCAGGACAGACAAACTATTCTCCT i mm10.chr11 I 484 I 882 s canFam3.chr9 39315618 220 - 61074082 AATATGATGAAG-AAGGAACTTACTTGAGGCTGAAGTCATCCACTGCCATCCTGGCATTGTCAATGAGAAGAATGATCTGAGCGTTGGTCAGCTTGCCATCCATGATCTGTAAAACACACATCAAGAG--------TCATTTAAGTCAGACACACTTCCATGGGAGAACTGCATTTCTGCTCTGTA-CTTTCTGGGTACAC-ACTTGTTAGCATAGATGCTGTTCTTTTCT i canFam3.chr9 C 0 C 0 a score=448594.000000 s hg38.chr17_JH159146v1_alt 80847 133 + 278131 GGCAGTGGAACAATGAATAACCGAATCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCAGAATGA-TTTTAAAATAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTTTTCTTTTTATGTTGAGTTT s panTro4.chr17 66201748 133 - 82630442 GGCAGTGGAACAATGAATAACCGAATCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCAGAATGA-TTTTAAAATAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTTTTCTTTTTATGTTGAGTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24730977 133 - 73212453 GGCAGTGGAACAATGAATAACCGAATCAGTAAATGCTTAGTGAGCACACAGTAGGTGCAA---AGCAGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTTTTCTTTTTACGTTGAGTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47950633 133 - 81552678 GGCAGTGGAACAATGAATAACCGAATCAGTAAATGCTCAGTGAGCACGTACTAGATGCAA---AGCAGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTGAGTGTTACTGCCTTTTTTCTTTTTACGCTGAGTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53062385 133 + 80904711 GGCAGTGGAACAATGAATGACCGAGTCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCAGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTCTTCTTTTTACATGGAGTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52584995 133 + 80997621 GGCAGTGGAACAATGAATGACCGAGTCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCAGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTCTTCTTTTTACATGGAGTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47630078 133 + 74645514 GGCAGTGGAACAATGAATGACCGACTCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCGGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTCAGTGTtactgcctttcttctttttacatgGACTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9898163 133 - 75148670 GGCAGTGGAACAATGAATGACCGAGTCAGTAAATGCTTAGTGAGCACATACTAGGTGCAA---AGCAGAATGA-TTTTAAAGTAAGAATATGATCTGCAGTCAGTGTTACTGCCTTTCTTCTTTTTACATGGAGTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112743599 133 + 159171411 GGCGGTGGATCAATGAATAACCAAATCAGAAAATGTTTAGTGAGCACATACTAGGTACAA---AGCAGAATGA-TTTTATATTAAAAATATGATCTGCAGTCAGTGTTACTGCCTTTTTTCTTTTTACATTGAGTTT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39315838 126 - 61074082 GGCAGTGGAAAAACAAGTAATGCAATCAACAAAT----ATTGAGCACTTACTAGGTACAAACCATCAGAATGATTTTTAAAGTACGAACATGGTCCGCAGCCACT-TCACTGTCTT-----TTTTTACCCTAAGTT- i canFam3.chr9 C 0 C 0 e mm10.chr11 99486897 882 + 122082543 I a score=308520.000000 s hg38.chr17_JH159146v1_alt 80980 82 + 278131 TGACAGGCTTGGATTGATGCAACTGCTGA-AAGAATGATATAGGAAGGGGAAGGACAGTAATTGTTCAAAATGCCCTCTAA-CT s panTro4.chr17 66201881 82 - 82630442 TGACAGGCTTGGATTGATGCAACTGCTGA-AAGAATGATATAGGAAGGGGAAGGACAGTAATTGTTCAAAATGCCCTCTAA-CT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24731110 82 - 73212453 TGACACGCTTGGATTGATGAAACTGCTGA-AAGAATGATATAGGAAGGGGAAGGACGGTAATTGTTCAAAATGTCCTCTAA-CT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47950766 82 - 81552678 TGACAGGCTTGGATTGATGCAACTGCTGA-AAGAATGATATAGGAAGGGGAAGGACAGTAATTGTTCAAAATGCCTTCTAA-CT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53062518 82 + 80904711 TGACAGGCTTGGACTGATGCAACTGCTGA-AACAATGATATAGGAAGGGGAAGGACAGTAATTATTCAAAATGCCTTCTAA-CT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52585128 82 + 80997621 TGACAGGCTTGGACTGATGCAACTGCTGA-AACAATGATATAGGAAGGGGAAGGACAGTAATTATTCAAAATGCCTTCTAA-CT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47630211 82 + 74645514 TGACAGGCTTGGACTGATGCAACTGCTGA-AACAATGATATAGGAAGGGGAAGGACAGTAATTATTCAAAATGCCTTCTAA-CT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9898296 82 - 75148670 TGACAGGCTTGGACTGATGCAACTGCTGA-AACAATGATATAGGAAGGGGAAGGACAGTAATTATTCAAAATGCCTTCTAA-CT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112743732 83 + 159171411 TGACAGGCTTGGATTGATGCAACTGCTGA-AAGAATGATATAGGGAGGGGAAGGATAGTAATTGTTCAAAATGCCTTCTAGTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99487779 82 + 122082543 TAGCAGGCAGGGATTGATTTGGCCACTGC-AAGAGTAAAGGAGGGTAAGAGAGGACGGTGCCTCTTGGCAATGCCTTCTAA-TT i mm10.chr11 I 882 I 351 s canFam3.chr9 39315964 78 - 61074082 TAACAGACTAGGATTGGTGCA--TTCTAAGAAGAATGACATTGGAAGGG---GGAAAGACATTGTTCAAAGTGCCTTCTGA-CT i canFam3.chr9 C 0 C 0 a score=396944.000000 s hg38.chr17_JH159146v1_alt 81062 119 + 278131 TTTTAGGTTATGGACATGTCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTAttaggttggtgaaaaagtga s panTro4.chr17 66201963 119 - 82630442 TTGTAGGTTGTGGACATGTCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTAttaggttggtgaaaaagtga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24731192 119 - 73212453 TTTTAGGTTATGGACATGTCATAGCATTTTGCTTAATTAAGCTCATTCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTAttaggttggtgaaaaagtga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47950848 119 - 81552678 GTTTAGGTTATGGACATGTCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTAttaggttggtgaaaaagtga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53062600 119 + 80904711 TTTTAGGTTATGGACACATCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTGttaggttggtgacaaagtga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52585210 119 + 80997621 TTTTAGGTTATGGACACATCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTGTTAGGTTGGTGACAAAGTGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47630293 119 + 74645514 TTTTAGGTTATGGACATGTCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTGTTTGGTTGGTGAAAAagtga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9898378 119 - 75148670 TTTTAGGTTATGGACATGTCATAGCATTTTGCTTAATTAAGCTCATCCACAGCTGAAGATGTTTAAAGGACTTTAGGTTCTGATCCTTTTCTTATTGTGTTTGGTTGGTGAAAAAGTGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112743815 119 + 159171411 TTTTATGTTATGGACATGTCGTAGCATTTTGCTTAATTAAGCTCATCCACCTGTGAAGATGTTAAAAGGACTTTAGGTTCTGATCCTTTTCTTATTATATTAAGTTGATGAAAAAGTCA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39316042 95 - 61074082 -CTCCAGTGCTGCAAACATCTTAGTGTTTTGT----TTCAGCTCATCCACATCTGACGATGTTAAAAAAGTTTTAAGTTATAATCCTGTTTTTATTGTGA------------------- i canFam3.chr9 C 0 C 0 e mm10.chr11 99487861 351 + 122082543 I a score=1939695.000000 s hg38.chr17_JH159146v1_alt 81181 575 + 278131 tttttgccattacttttaatTAGTTCAGCCCTCCAAAAATACAAAAATTATTATTTCAGGTGAACATAATTCTTACTTGTGATA-----------------GCAATCATGTTTCTA--ATCAGTGTTA--CTGAGCAACGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACA---------TTTTTTTTTTGCCCGAAGTGACTGTA------------ACTTGAAGGTGTGTTTATGTCATTGCAACTTATTCTGTGATGAGAATGTGCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAAAATGCTTAAGAAGCTTCAGTAGTGGTAAAGCCTCCAGTTAAAGACTTTCACTAGATGTTCGTATA-ATTTTTTTTTT-ACTTTGAAAAGAAAAATAGTATTGAAAGCACTTACTCGAGCAAGTGTGTATACATTTATGATTTGTAAACACTTGTAGGTATGTTATAGTCAGAGAAATAGCACACATTTGATGTATGTCACTGTCTTTAGG-------GTAGAAGATGTCTCGTTGTCAAAAG-TGTAATAA----TGCTTTTACGCCAAGTGTTgtgctggactagaaacttag s panTro4.chr17 66202082 588 - 82630442 tttttgccattacttttaatTAGTTCAGCCCTCTAAAAATACAAAAATTATTATTTCAGGTGAACATAATTCTCACTTGTGATA-----------------GCAATCGTGTTTCTA--ATCAGTGTTA--CTGAGCAACGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACA---------TTTTTTTTTTGCCCGAAGTGACTGTAGCCATACACGTAACTTGAAGGTGTGTTTATGTCATTGCAACTTATTCTGTGATGAGAATGTGCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAAAATGCTTAAGAAGCTTCAGTAGTGGTAAAGCCTCCAGTTAAAGACTTTCACTAGATGTTCGTATATATTTTTTTTTT-ACTTTGAGAAGAAAAATAGTATTGAAAGCACTTACTCGAGCAAGTGTGTATACATTTATGATTTGTAAACACTTGTAGGTATGTTACAGTCAGAGAAATAGCACACATTTGATGTATGTCACTGTCTTTAGG-------GTAGAAGATGTCTCGTTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAATGTTGTGCTggactagaaacttgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24731311 588 - 73212453 tttttgccattacttttaatTAGTTCAGCCCTCCAAAAATACAAAAATTATTATTTTAGGTGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGTGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACA-------TTTTTTTTTTTTGCCCTAAGTGACTATAGCCATACACGTAACTTGTAGGTGTGTTTATGTCATTACAACTTATTCTGTGATGAGAATGTGCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAAAATGCTTAATACGCTTTAGTAGTGGTGAAGCCTCCAGTTAAAGACTTTCGCTAGATGTTCGTATA-A-TTTTTTTTT-ACTTTAAAAAGAAAAATAGTATTGAAAGCACTTACTCAAGCAATTGTGTATACATTTATGATTTGTAAACACTTGTATGTATGTTATAGCCAGAGAAATAGCGCACGTTTGATGTATGTCACTGTCTTTAGG-------GTAGGAGATGTCTTGTTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAGTGTTGTGCTggactagaaacttgg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47950967 586 - 81552678 tttttgccattacttttaatTAGTTCAGCCCTCCAAAAATACAAAAATTATTATTTTAGGTGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGTGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------TATGTATT-TTGTAATAGTCATCACAGAACACA------TTTTTTTTTTTTTGCCTGAAGTGATTATAGCCATACACGTAACTTGCAGGTGTGTTTATGTCATTACAACTTATTCTGTGATGAGAATGTGCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAAGAAAATGCTTAATAAGCTTTAGTATTGGTAAAGCCTCCAGTT--AGACTTTCACTAGATGTTCGTATA-A-TTTTTTTTT-ACTTTAAAAAGAAAAATAGTATTGAAA-CACTTACTCGAGCAATTGTGTATACATTTATGATTTGTAAACACTTGTAGGTATGTTATAGTCAGAGAAATAGCGCACATTTGATGTATGTCACTGTCTTTAGG-------GTAGGAGATGTCTCGTTGTCAAAAG-TGTAACAA----TGCTTTTACACCAAGTGTTGTGCTggactagaaacttgg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53062719 586 + 80904711 tttttgccattacttttaatTAGTTCAGCCCTCCAAAAGTACAAAAATTATTATTTTAGATGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGGGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACA--------ATTTTTTTTTTGCCCGAAGTGACTATAGCCACACACATAACTTGTAGATGTGTTTATGTCATTGCAACTTACTCTGGGATGAGAATGCTCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAACATGCCTAATAAGTTTTAGTAGTGGTAAGGCCTGCAGTTAAAGACTTTCACTAGATGTTCGTATA-G--TGtttttt-actttaaaaataaaaatattattGAAAGCACTTACTCGAGCAATTGTGTATACATTTATGATTTATAAACACTTGTAGATATGTTATAGTCAGAGAAATAGCTCACATTCAATGTATGTCACTGTCTTTAGG-------GTAGAAGACGTCTCATTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAGTGTTGTGCTAGACTAAAAACTTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52585329 586 + 80997621 TTTTTGCCATTACTTTTAATTAGTTCAGCCCTCCAAAAGTACAAAAATTATTATTTTAGATGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGGGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACA--------TTTTTTTTTTTGCCCGAAGTGACTATAGCCACACACATAACTTGTAGATGTGTTTATGTCATTGCAACTTACTCTGGGATGAGAATGCTCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAACATGCCTAATAAGTTTTAGTAGTGGTAAGGCCTGCAGTTAAAGACTTTCACTAGATGTTCGTATA-A--TGTTTTTT-ACTTTAAAAATAAAAATATTATTGAAAGCACTTACTCGAGCAATTGTGTATACATTTATGATTTATAAACACTTGTAGATATGTTATAGTCAGAGAAATAGCTCACATTCAATGTATGTCACTGTCTTTAGG-------GTAGAAGACGTCTCATTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAGTGTTGTGCTAGACTAAAAACTTGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47630412 588 + 74645514 tttttgccattacttttaattagTTCAGCCctccaaaagtacaaaaattattattttagatgaaCATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGTGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCAcagaacacaa------ttttttttttttgcccgaTGTTACTATAGCCGTACACATAACTTGTAGATGTGTTTATGTCATTGCAACTTACTCTGGGATGAGAATGCTCTCATTgtagctattaaaatattaactgaAATAATTTCTTACCATCTAAGGAACATGCCTAATAAGTTTTAGTAGTGGTAAGGCCTCCAGTTAAAGACTTTCACTAGATGTTCGTATa-a--tgtttttt-actttaaaaataaaaatattattgaaagcACTTACTCGAGCAATCGTGTATACATTTATGATTTATAAACACTTGTAGATATGTTATAGTCAGAGAAATAGCTCACATTCAATGTATGTCACTGTCTTTAGG-------GTAGAAGACGTCTCATTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAGTGTTGTGCTAGACTAAAaacttga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9898497 591 - 75148670 TTTTTGCCATTACTTTTAATTAGTTCAGCCCTCCAAAAGTACAAAAATTATTATTTTAGATGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--ATCAGTGTTA--CTGAGCAAAGC-------TA--ACACTAATATTC-------------------AATGTATT-TTGTAATAGTCATCACAGAACACAAT----TTTTTTTTTTTTTGCCCGAAGTTACTATAGCCATACACATAACTTGTAGATGTGTTTATGTCATTGCAACTTACTCTGGGACGAGAATGCTCTCATTGTAGCTATTAAAATATTAACTGAAATAATTCCTTACCATCTAAGGAACATGCCTAATAAGTTTTAGTAGTGGTAAGGCCTCCAGTTAAAGACTTTCACTAGATGTTCGTATA-A--TTTTTTTTAACTTTAAAAATAAAAATATTATTGAAAGCACTGACTCGAGCAATCGTGTATACATTTATGATTTATAAACACTTGTAGATACGTTATAGTCAGAGAAATGGCTCACATTCAATGTATGTCACTGTCTTTAGG-------GTAGAAGACGTCTCGTTGTCAAAAG-TGTAATAA----TGCTTTTACACCAAGTGTTGTGCTggactagaaacctgg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112743934 581 + 159171411 CTTTTGCCATTACTTTTAGTTAGTTCAACCCTCCAAAAGTACAAAAATTATTATTTTAGGTGAACATAATTCTTACTTGTGATA-----------------GCATTCATGTTTCTA--CTCAGTGTTA--CTGAGCAAAGC-------TAACACACTAATATTA-------------------AATGTATT-TTGTAATAATCATCATAGAACACA----------ATTTTTTTTGCCCAAAGTGACCGTAGCCATGCATATAACTTGTAGGTATGTTTACGTGATTGCAACTTATTCTGTGATGCGAATGCTTTCATTGTAGCTATCAAAATATTAACTGACATAATTCTTTACCGTCTAGTGAAAATACTTAATAAGCCTTAGTAGTGGTACAGCCTCCAGTTAAAGAGTTTCACTAGATGTTTGTAAATA--TATTTTTT-ACTTTAAAGAGAAAAATATTATTGAAAGCACTTACTTGAGCAATTGTGTATACATTTATAATTTGTAAATACTTGTAGGTATGTTATAGTCAGAAAAACAGTGCACATTTGCTGTA------TGTCTTTAGG-------GTAGAAGATGTCTCATCGTCAAAAG-CGTCATAA----TGCTTTTATACCAAGTGTTATGCTGCACTAGAAACCTGG i calJac3.chr5 C 0 I 192 s mm10.chr11 99488212 570 + 122082543 TTCTTGCTGTAACT----ACAAGGTAAGATTTCCTAAAGTAC---GGTTACTATCTTAGGCACATGTAATTCTTGCTAGCGACA------------------CATTCACATTTCCATTGTGAGAGCTAATTTGAAGAATAC-------TT--CATATAGTCTTCA--TATAAA---------GAAattattattgttatcattattattgctattattattactactattattTTGCCCACAGAGACTAGAACCACACACATATCCTTCAGGAAGATGCAT----TTGTAATATATT-TGTGATGAGACTCCCTTGATAACAGCTATGAAAACACAAACTCAGTGAATTCTTTACCATCAAATGGTGCTGTTTAAGAAGTTTCTACAGTATTAAAACCTTCAGCTAAAGAC--TCACTAGATATTTACATA-G-GTTTTATGT-ACATTAAAAAGA-----CTCGTTGGAGGTGTTTGAGCAATTGACTGGCTATACA------------------------GGGCATTGGGATCAGAGCAAGGACTCACATTTGATTTATATCGTGATCTTTGGGAAA--ACGGAGTCAATTTCTCATTATCTAAAGATAAAGTAA----TGGTTCCATTTGGAGCATTGCTACAGGGTGCAGCTGCTG i mm10.chr11 I 351 C 0 s canFam3.chr9 39316137 598 - 61074082 ----------------CTATAAGTCTGGCTCCCTTAAAGTGC---AGTAGTTATTTTAGATGAACGTAATTCTTCTTTGCAGTAGCATTCATGTTGCAGTAGCATTCATGTTTCTG--ATCAGTGACA--CTGAGCAAAGTATCAAAATA--TCACTGATATTAGCTTGTCAAACTGATTTTGAGTGAATT-TTATAATAGTCATCACATGCCATA---------ATTATTTTTTGTTCAAAGTGACTATAACCATTCACAAAACTTGTAGATAGGTGTACATGTTCATAAATTATTCCATGATGAGAATGCCCTAATTGTAGCTATTAAAATATTAACTGAAATATTTTTTTGGCA------------GCTTAATAAACTTTAACTGTGGTAAAGCCTTTGGTT-AAGACTTGTACTGGGTGTTTATATA-C----TTTTGG-ACCTTAAAATGAAAAATACTGTTGAAAGTTTCTACTTGGGTAACTGTGCTTATGTATATGATTTGTAAATTCTTCTAGGCA------ATTTTAACAAGTAGTGCACATTTGATATATGTCACTCTCTTCAGAAAATTGAGTGGAAGATGTCTGAACATCAAAAG-TGTAATACTACTTACTTTTGTACCACATATTGTGCTgaactaggaactgg- i canFam3.chr9 C 0 C 0 a score=787676.000000 s hg38.chr17_JH159146v1_alt 81756 220 + 278131 ag-cttttctttggttctggctctgttcttgacca-tccatgtgga--tgcatcaggctgcatcactctactctccaggcctcagtttcatccattgtcaaataaggagtctgtactagagacagaggaccttagaggtcttagctctaagtttctgtaattTAGTTGGAGTCAGAGAATCCTGGGTAATTCCCATTATATTTACATAGCTCATTCCTTTATTT s panTro4.chr17 66202670 220 - 82630442 ag-cttttctttggttctggctctgttcttgacca-tacatgtgga--tgcatcaggctgcatcactctactctccaggcctcagtttcatccattgtcaaataaggagtctgtactagagacagaggaccttagaggtcttagctctaagtttctgtaattTAGTTGGAGTCAGGGAATCCTGGGTAATTCCCATTATATTTACATAGCTCATTCCTTTATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24731899 220 - 73212453 ag-cttttctttggttctggctctgttcttgacca-tccatgtgga--tgcatcaggctgcatcactctactctccaggcctcagtttcatccgttgtcaaataaggagtctgtactagagaaagaggactttagaggtcttagctttaaatttctgtaattTAGTTGGAGTCAGAGAATCCTGGGTAATTCCCATTATATTTACATAGCTCATTCCTTTATTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47951553 220 - 81552678 ag-cttttctttggttctggctctgttcttgacca-tccacgtgga--tgcatcaggctgcatcactctactctccaggcctcagtttcatccattgtcaaataaggagtctgtactagagacagaggaccttagaggtcttagctctaaatttctgtaattTAGTTGGAGTCAGAGAATCCTGGGTAATTCCCATTATGTTTACATAGCTCATTCCTTTATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53063305 221 + 80904711 AGTTTTTTTTTTGGTTTTGGCTCTGTTCTTGATCA-TCCAAGTGGA--TGCATCAGGCTGCAtcactctattctccaggcctcagtttcatccgttgtcaaataaggagtctgcactagagacagaggaccttagaggtcttaggtctaaatttctgtaattTAGTTGGAGTCAGAGAATCCTGGGTAATTCCCATTATATTTATATAGCTCATTCCTTTATTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52585915 221 + 80997621 AGTTTTTTTTTTGGTTTTGGCTCTGTTCTTGATCA-TCCAAGTGGA--TGCATCAGGCTGCAtcactctattctccaggcctcagtttcatccgttgtcaaataaggagtctgcactagaGACAGAGGACCTTAGAGGTCTTAGGTCTAAATTTCTGTAATTTAGTTGGAGTCAGAGAATCCTGGGTAATTCCCATTATATTTATATAGCTCATTCCTTTATTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47631000 220 + 74645514 ag-tttttttttggttttggctcTGTTCTTGATCA-TCCAAGTGGA--TGCATCAGGCTGCATCACTCtattctccaggcctcagtttcatCCGTTGTCAAATAAGGAGTCTGCACTAGAGACAGAGGACCTTAGAGGTCTTAGGTCTAAATTTCTGTAATTTAGTTGGAGTCAGATAATCCTGGGTAATTCCCATTATATTTATACAGCTCATTCCTTTattt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9899088 221 - 75148670 aggtttttttttggttctggctctgttcttgataa-tccaagtgga--tgcatcaggctgcatcactctattctccaggcctcagtttcatccgttgtcaaataaagagtctgcactagaGACAGAGGACCTTAGAGGTCTTAGGTCTAAATTTCTGTAATTTCGTTGGAGTCAGAGAATCCTGGGTAACTCCCATTATATTTATATAGCTCATTCCTTTATTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112744707 210 + 159171411 AG-CTTTTCTTTGGCTctggctctgttcttgacca-tccacgtgga------------tgcatcactctactctccaggcctcagtttcatcctttgtcaaataaggagtctatactagagactgaggacctttgaggtcttagctcaaaatttctgtaattTAGTTGCAGTCAGAGACTCCTCGGTCATTCCCGTTATATTTATACAGTTCATTCCTTTATTT i calJac3.chr5 I 192 C 0 s mm10.chr11 99488782 209 + 122082543 ---TGCTTCTCTGG-GCTGGCTTCCTTCCTGATCAGGCCCCATGGT--TG-----GGCAG--TCACTCCGC-CTTTGTGCTCTGGTCCCAACATTTGTTCAATAAGGGTTTTGTATTTGAAACAGGTGACCTCAGAGGTCCCCCTTTTAAGCTTTTGCAGTGCAGCTGGAGAGGCAGAACCTTTGGC-ATTCCCACTGTATTTGTACAGGTAATTCCTTTATTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39316735 207 - 61074082 ag-attttcttttttacttgct---ttactgacca-ttagtgtgaacttgggccag------tcaccctgttccctgggtttcaatttcatcatctgttaaataaggagttcgtagtagaaacta------ctaaaaatcttagctctaaacttctgtgattTAGCTGGAGGCAGAGAATCCTGTGACATTCTCATCATATTTGAAGAGATAATTCTTTTATTT i canFam3.chr9 C 0 I 180 a score=210047.000000 s hg38.chr17_JH159146v1_alt 81976 50 + 278131 AGAAAGCATTTT--------CTTAGGACAAAGCTATACTTCAGTACAAAGGC-ACCTTT s panTro4.chr17 66202890 50 - 82630442 AGAAAGCATTTT--------CTTAGGACAAAGCTATACTTCAGTACAAAGGC-ACCTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24732119 50 - 73212453 AGAAAGCATTTT--------CTTAGGACAAAGCTATACTTCAATACAAAGGC-ACCTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47951773 50 - 81552678 AGAAAGCATTTT--------CTTAGGACAAAGCTATACTTCAATACAAAGGC-ACCTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53063526 50 + 80904711 AGAAAGCATTTT--------CTTAGGACAAAGTTATACTTCAATACAAAGGC-ACCTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52586136 50 + 80997621 AGAAAGCATTTT--------CTTAGGACAAAGTTATACTTCAATACAAAGGC-ACCTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47631220 50 + 74645514 agaaagcatttt--------cttAGGACAAAGTTATACTTCAATACAAAggc-accttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9899309 50 - 75148670 AGAAAGCATTTT--------CTTAGGACAAAGTTACACTTCAATACAAAGGC-ACCTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112744917 51 + 159171411 AGAAAGTATTTT--------CTTAGGACAAAGCTATACTTCAATACAAAGGCAACTTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99488991 58 + 122082543 AGAGAGGTTTTTTTTTTTCCCTTAGTGTAAAGCTCTTCCTTAATACAAAGGT-GGCTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39317122 50 - 61074082 AGAAAGGATTTC--------CTCAGGACAAAGTTATACCTCAATACAAAGGC-ATCTTT i canFam3.chr9 I 180 I 174 a score=1267888.000000 s hg38.chr17_JH159146v1_alt 82026 357 + 278131 TAAAAGTCTGGTCCTATTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcatgaatgctgggtctggaactcaaagagcagggcctgggatcctgctc-cgcgcttactggctgggtgagattggctgagtgagcttggctgagtctcagtttattcatccataaaatagc---------aataacaatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtatgtcaaataatgtc---aaatagcatattatcggcatattatagacagtgaaaaattggtCGAAAC--TGAATTTGTTCAGAAAAAAGT-AAATAATACACCTTTCTTTTT s panTro4.chr17 66202940 357 - 82630442 TAAAAGTCTGGTCCTATTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcatgaatgctgggtctggtactcaaagagcagggcctgggatcctgctc-cgcacttactggctgggtgagattggctgagtgagcttggctgagtctcagtttattcatccataaaatagc---------aataataatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtatgtcaaataatgtc---aaatagcatattatcggcatattatagacagtgaaaaattggtCGAAAC--TGAATTAGTTCAGAAAAAAGT-AAATAATACACTTTTCTTTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24732169 357 - 73212453 TAAAAGTCTGGTCCTATTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcacgaatgctgggtctggaactcaaagagcagggcctgggatcctgctc-cacacttactggctgggtgagattggctgagtgagcttggctgagtctcagtttattcatccataaaatagc---------aataataatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtatgtcaaataatgtc---aaatagcatattattggcatattatagacagtgaaaaattggtCAAAAC--TGAATTAGTTCAGAAAAAAGT-AAATAATACACTTTTCTTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47951823 357 - 81552678 TAAAAGTCTGGTCCTATTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcacgaatgctgggtctggaactcaaagagcagggccttggatcctgtgc-cgcacttactggctgggtgagattggctgagtgagcttggctgagtctcggtttattcatccataaaatagc---------aataataatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtatgtcaaataatgtc---aaatagcatattatcagcatattatagacagtgaaaaattggtTGAAAC--TGAATTAGTTCAGAAAAAAGT-AAATAATACACTTTTCTTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53063576 343 + 80904711 TAAAAATCTTGTCCTGTTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGATGGCACAAATGCTgggtctggaactcaaggagcagggcctgggatcctgctg-cacacttactggctgg--------------gtgaacttggctgagtctcagtttcttcatccataaaatagc---------aatagtaatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtacatcaaataatgtc---aaatggcatattcttggcatattatagacagtgaaaaattggtCGAAAC--TGAATTAGTTAAGAAAAAAGT-AAAAAATACACTTTTCTTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52586186 343 + 80997621 TAAAAATCTTGTCCTGTTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcacaaatgctgggtctggaactcaaggagcagggcctgggatcctgctc-cacacttactggctgg--------------gtgaacttggctgagtctcagtttcttcatccatcaaatagc---------aatagtaatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtacatcaaataatgtc---aaatagcatattcttggcatattatagacagtgaaaaattggtCGAAAC--TGAATTAGTTAAGAAAAAAGT-AAAAAATACACTTTTCTTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47631270 337 + 74645514 taaaaatcttgtccTGTTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGATGGCACAAATGCTGGGTCTGGAACTCAAGGAGCAGGGCCTGGGATCCTGCTC-CACACTTACTGGCTGG--------------GTGAACTTggctgagtctcagtttcttcatccataaaatagc---------AATAGTAATAGTTACT--------TCATCAAAGAGTT-ATGAGA-----ATTAGAAGAGAGTACATCAAATAATGTC---AAATAGCATATTCTTGGCATATTATa------aaaaaattggtcaaaac--tgaattagttaagaaaaaagt-aaaaaatacacttttcttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9899359 344 - 75148670 TAAAAATCTTGTCCTGTTTAAAGCTCCACTGATCCCATGGAATTTGGTATCATGAATGCACAATAGCAGGATTTAGAGAtggcacaaatgctgggtctggaacgcaaggagcagggcctgggatcctgctc-cacacttactggctgg--------------gtgaacttggctgagtctcagtttcttcatccataaaatagc---------aatagtaatagttact--------tcatcaaagagtt-atgaga-----attagaagagagtatgtcaaataatgtc---aaatagcatattcttggcatattatagacagtgaaaaattggtCGAAAC--TGAATTAGTCCAGAAAAAAGTAAAAAAATACACTTTTCTTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112744968 342 + 159171411 TAAGAATCTGGTCCTATTTAAAGCTCCACTGATCACATGGAATTTGGTATCATGAATGCACAATAGCAGGATTCAGAGAtggcatgaatgctgggtctggaacgcagagagcagggcctgggatcctgctc-cacacttactggctgt--------------gtgagcttggctgagtctcagtttcttcatccataaaatatc---------aataataatagttact--------ttatcaaagagtt-atgaga-----attagaagagatTAAGTCAAATAATGGC---AAATA-CATATTCTCAGCATATTATAGACAGTGAAAAATTGGTCGAAAC--TGAATTAGTTCAGACAAATGT-AAATAATATACTTTTCTTTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99489049 311 + 122082543 TAAAACTCTAGTCCTATTTAAAGCTTTGCCAATGACATGGAATTTGGTCCTGTGAATTAACAATAGCAGCTTTCACAAGTAGGGGGGATGCTGGGTCTAGACCTCAAAGATCA-GGCCTGGGGT----------CACCCACTAGCTGG--------------GTAAGGACATCAGAGACTCATTTTCCTCATCTACAA-----C---------AATAATAATGGTTACTGACCACTGGCACAGACCAATT-GTAAGA-----GTCAGAAGATAGTA-ACGAGATAATGTT---GCAGG---CATGCTTGGCCTGCTACAGGCACTGTGAAA-GGGTC---AT--TGGACTTTGTCCTGAAAGTGT-AAAC----------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 39317346 363 - 61074082 TAAGGATCCACTCTTATTCAAAGCTCCATTGATTACTTGGAATTTGGTATCATGAATGCACAATAGCAGGATTCAGAGGTGAtaataacactgtgtctggaactcaaagggcagagattggggtcctgttctcccacctactagcaga--------------gtgacctta-ctgaatctcagtttcttcatccataaaatggcaatagtgataataatagtagccact--------tcatcaaagagttcatgagagttagattagaagagattaaatacaataatgttgtaacatagtataatctgggcatactgtagacactgaagaattagttGAAACtatatattaatttagaaaaatgt-aaaatgtttaattttctttta i canFam3.chr9 I 174 I 1335 a score=645719.000000 s hg38.chr17_JH159146v1_alt 82383 195 + 278131 AAAAATCTAGCACTTTT-----ATAGATTCAGTGACTACACTGTGAACATCCCCAGGTTCTATATGCTGAGATGCCTGCTCAGACTTTTGCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGCTCCTGCCTCA-TTCTTTTTCCTCTTGTGGGATTCCAAATGGTACTATGGCCCCTTCCCTTGCTAT-AAAGAAGGACACT s panTro4.chr17 66203297 195 - 82630442 AAAAATCTAGCACTTTT-----ATAGATTCAATGACTACACTGTGAACATCCTCAGGTTCTATATGCTGAGATGCCTGCTCAGACTTTTGCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGCTCCTGCCTCA-TTCTTTTTCCTCTTGTGGGATTCCAAATGGTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGACACT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24732526 195 - 73212453 AAAAATCTAGCACTTTT-----GTAGAGTCAATAACTACACTGTGAACATCCCCAGGTTCTATATGCTGAGATGCCTGCTCAGACTTTTGCTGT--TCACGGT-GGGACATAGCCAGGCTGGCTGCTCCTGCCTCA-TTCTTTTTTCCCTTGTGGGATTCCAAATGGTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGACACT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47952180 195 - 81552678 TAAAATCTAGCACTTTT-----GTGGAGTCAATGACTACACTGTGAACATCCCCAGGTTCTATGTGCTGAGATGCCTGCTCAGACTTTTGCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGCTCCTGCCTCA-TTCTTTTTCCCCTTGTGGGATTCCAAATGGTAAAATGGCCTCTTCCCTTGCTAT-AAAAAAGGACACT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53063919 195 + 80904711 AAAAATCTGGCACTTTT-----GTAGAGTCACTGACTACACTGCGAGCATCTCCAGGTTCTATATGCTGAGATGCCTGTTCAGACTTTTTCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGCTTCTGCCTCA-TTCTTTTTCCCCTTGTGGGATTCCAAGTGCTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGATACT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52586529 195 + 80997621 TAAAATCTGGCACTTTT-----GTAGAGTCACTGACTACACTGCGAGCATCTCCAGGTTCTATATGCTGAGATGCCTGTTCAGACTTTTTCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGCTTCTGCCTCA-TTCTTTTTCCCCTTGTGGGATTCCAAGTGCTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGATACT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47631607 195 + 74645514 taaaatctggcaCTTTT-----GTAGAGTCACTGACTACACTGCGAGCATCTCCAGGTTCTGTATGCTGAGATGCCTGCTCAGACTTTTTCTGT--TCATGGT-GGGACATAGCCAGGCTGGCTGcttctgcctca-ttctttttcCCCTTGTGGGATTCCAAGTGCTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGATACT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9899703 194 - 75148670 AAAAATCTAGCACTTTT-----GTAGAGTCACTGACTACACTGCGAGCATCTCCAGGTTCTATATGCTGAGATGCCTGCTCAGACTTTTTCTGT--TCATGGT-GGGACATAGCCA-GCTGGCTGCTTCTGCCTCA-TTCTTTTTCCCCTTGTGGGATTCCAAGTGGTACTATGGCCTCTTCCCTTGCTAT-AAAAAAGGATACT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112745310 199 + 159171411 AAAAATCTAGCACTTTT-----GCAGCGTCAATGACTGTACTGCAAGCACCCCCAGGTTCAATATGCTGAGATGCCTCCTCAGACTTTTGCTGTTCTCATGGTGGGGACATAACCAGGCTGGCCGCTCCTGCTTCA-TTCTTTTTTTCCCTCGTGGATTCCAGATGGTACTATGGCCTCTTCCCTTGCTATAAAAAAAGGATACT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39319044 198 - 61074082 AAAAAGCTTGCACTTTTTGTAATGAGAGCCAATGCCTGTATAGGATA-AAGTCCAGGTTCTGTATATTGAGATGTATCTTCAAACTTCTGCTGT--TCATAGT-GGAAGATAACCAGGCT-GCTGC-CCTGCCCAACTTTTTTCTTCTCTTGGTGTATTCCAAATGGTACTATGACTACTTCCTTTGCTCT-AAAAAAGGATTCT i canFam3.chr9 I 1335 C 0 e mm10.chr11 99489360 0 + 122082543 C a score=1326740.000000 s hg38.chr17_JH159146v1_alt 82578 380 + 278131 TTTAGATATTTCCTTGTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCAGACCCCTTATTCTTTGCATTATGTAAGCTCCTGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGGCCATTGTGGGGTAACCCTTACTTACTTGTGCACTGAGGTT------TTCTATTTGACACACACTATGAGG-----TGTTAATCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGGGTTA--------AATTGGTAATTTATCCATTGCAAAGTCCACCTCAAGTGTCTGATTCCCCCAGCT---------ATCATTCTCATAGCACACAAAT-GTGA-ATTCTGAAATGTGCTTGATATAGAG s panTro4.chr17 66203492 380 - 82630442 TTTAGGTATTTCCTTGTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCAGACCCCTTATTCTTTGCATTATGTAAGCTCCTGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGGCCATTGTGGGGTAACCCTTACTTACTTGTGCACTGAGGTT------TTCTATTTGACACACACTATGAGG-----TGTTAATCT-------------------------ACATC-----CAGAGAATCAGCAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGGGTTA--------AATTGGTAATTTATCCATTGCAAAGTCTACCTCAAGTGTCTGATTCCCCCAGCT---------ATCATTCTCATAGCACACAAAT-GTGA-ATTCTGAAATGTGCTTGATATAGAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24732721 380 - 73212453 TTTAGGTATTTCCTTGTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCAGACCCCTTATTTTTTGCATTATGTAAGCTCCTGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGACCATTGTGGGGTAAGCCTTACTTACTTGTGCACTGAGGTT------TTCTATTTGATACACACTATGAGG-----TGTTAATCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCCATTGCAAAATCCACCTCAAGTGTCTGATTCCCCCAGCT---------ATCATTCTCATAGCACACAAAT-GTGA-ATTCTGAAATGTGCTTGATATAGAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47952375 380 - 81552678 TTTAGGTATTTCCTTGTCTCCTCTCCGCAGTGCTGCTTAGGGGCATTCTT------ACCAATATCTTTCCCTCCAGACCCCTTATTCTTTGCATTATGTAAGCTCCTGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGAACATTGTGGGGTAACCCTTATTTACTTGTGCACTGAGGTT------TTCTATTTGACACACACTGTGAGG-----TGTTAATGT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCCATTGCAAAGTCTTCCTCAAGTGTCTGATTCCCCCAGCT---------GTCATTCTTATAGCACACAAAT-GTGA-ATTCTGAAATGTGCTTGATATAGAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53064114 386 + 80904711 TTTAGGTGTTTACTGTTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCGGACCAATTATTCTTTGCATTATGTAAGCTCATGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGACCATTGTGGGGTAACCCTTACTTACTTGTGCACTGAGGTTTTCTACTTCTATTTGACACATACTATGAGG-----TGTTAACCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCTGTTGCAAAGTCCACCTCAAGTGTCTGATTTCCCCAGCT---------ATCATTCTCATAGCACTCAAAT-GTGA-ATTCTGAAATGTACTTGATATGGAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52586724 386 + 80997621 TTTAGGTGTTTACTGTTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCGGACCAATTATTCTTTGCATTATGTAAGCTCATGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGACCATTGTGGGGTAACCCTTACTTACTTGTGCACTGAGGTTTTCTACTTCTATTTGACACATACTATGAGG-----TGTTAACCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCTGTTGCAAAGTCCACCTCAAGTGTCTGATTTCCCCAGCT---------ATCATTCTCATAGCACTCAAAT-GTGA-ATTCTGAAATGTACTTGATATGGAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47631802 386 + 74645514 TTTAGGTGTTTACTGTTGTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCGGACCAATTATTCTTTGCATTATGTAAGCTCATGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGACCATTGTGGGGTAACCCTTACTTACTTGTGCACTGAGGTTTTCTACTTCTATCTGACACATACTATGAGG-----TGTTAACCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCCGTTGCAAAGTCCACCTCAAGTGTCTGATTTCCCCAGCT---------ATCATTCTCATAGCACTCAAAT-GTGA-ATTCTGAAACGTACTTGATATAGAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9899897 382 - 75148670 TTTAGTTATTTACTGTTCTCCTCTCCACAGTGCTGCTTAGGGGCATTCTT------ACCAATACTTCTCCCTCCAGACCAATTATTCTTTGCATTACGTAAGCTCATGCAAAATGAAAAGTAGCTCTATCCCAAAGAGCCTGGGCACCATTGTGGGGTAACC----CTTACTTGTGCACTGAGGTTTTCTACTTCTATTTGACACATACTATGAGG-----TGTTAACCT-------------------------ACATC-----CAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTTTTCTGAGTTA--------AATTGGTAATTTATCCGTTGCAAAGTCCACCTCAAGTGTCTGATTTCCCCAGCT---------ATCATTCTCATAGCACTCAAAT-GTGA-ATTCTGAAATATACTTGATATAGAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112745509 376 + 159171411 TTCAGGTATTTCCTTGCCT-CTCTGCACAGTGCGGCTTAGGGGCATT-TT------ACCAATACTTTTTCCTCTGGTATCCTTATTCTTTTTATTTTCTAAGCTCATGGAAAGTGAAAAGTAGCTCTATCCCAAAGAGCCTGGGGACCAT--TGGGGTAGGCCTTACTTACTTGTGCACTGAATTT------TTCTATTTGATACATACTATGAGG-----TGTTAATCT-------------------------ACATT-----TAGAGAATCAGAAAATCAAAAATACTGTCTATGGGCTTATTTAGCTATTCTGCGTTA--------AACTGGTAAGTTATTCATTGCAAAGTCCACCTCAAGTGTCTGATTCCCCTAGCT---------ATCAGTCTCATAGCACACAAAT-GTGA-ATTCAGAAGTGTACTTGATATAGAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99489360 420 + 122082543 TGCAGGTATTTCCTTGCTTCTTGTCCACAGCATTGCTTTATGGCATTTTTATTTAAACCAGCCTTCTCCCTTCCAGGCTTCTTATCCTTGGTATTATTT--GCTCATGCAAAAT-AAAAGTAGCTCCGCCCCCAA-AGCTCGGG----ACTCTGTGGTAAGCCTTTCTTTCTTGTGCACTGTGTGA------CTGTATTC-ATCCATGCTGCTAGGCTGGCTGACAGCCTCTCATGGAGCAGCCTTGCAGTGTAAACACC--------AGAAACAGAGAAGTCAAAATAC--CCTGGGACCTTATTTGGCTTTTCCATGTTAAAGTGGTCAAGTGGTCACTTACCCATTGAGAAGCCCACACCAGGTTTGTGATCCCACCCTCTCTCTCCATCATCACTCTTATGGTCCACGAGC-GTGAGACCTTGGAGTGTACTCGGCATCTAG i mm10.chr11 C 0 I 443 s canFam3.chr9 39319242 352 - 61074082 -GTAGATATTTCCTTGTCTCCCTGCTGCAGTGCTGCTTAAGGATTTTCAT------ACCAATGCTTTTCCTTCCAGGCTCTTTATTCTTC-CATTGTCTAAACTCATAGGATAT-----GTAGCTCCATTTAGGAAAGCCCAGGGGC-----------------------CCTGTGCACTTAGGTG------------TTGATTGACATCCAGGGA-----AACCAAACA-------------------------GTATTCCCAACATGGGATCAGAAAATAAAAAATACAATCTGTGGGCTTATTTGGCTTTTTTGAGTTA--------AACTGATAATTTATCTGTTGTAAAACCCAC--CAAGAATCTGACTCCCCCCAGT-----CAGCATTCTTCTCAGTGTACGTGAATAGTGA-GTTCTGAAATGTACTCTATAGAGAA i canFam3.chr9 C 0 C 0 a score=16005.000000 s hg38.chr17_JH159146v1_alt 82958 3 + 278131 CAC s panTro4.chr17 66203872 3 - 82630442 CAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24733101 3 - 73212453 CAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47952755 3 - 81552678 CAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53064500 3 + 80904711 CAC i rheMac3.chr16 C 0 I 3 s macFas5.chr16 52587110 3 + 80997621 CAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47632188 3 + 74645514 CAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9900279 3 - 75148670 CAC i chlSab2.chr16 C 0 I 3 s calJac3.chr5 112745885 3 + 159171411 CAC i calJac3.chr5 C 0 C 0 s mm10.chr11 99490223 3 + 122082543 CAC i mm10.chr11 I 443 C 0 s canFam3.chr9 39319594 3 - 61074082 CAC i canFam3.chr9 C 0 C 0 a score=8129.000000 s hg38.chr17_JH159146v1_alt 82961 3 + 278131 GTT s panTro4.chr17 66203875 3 - 82630442 GTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24733104 3 - 73212453 ATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47952758 3 - 81552678 ATT i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52587113 3 + 80997621 ATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47632191 3 + 74645514 ATT i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112745888 3 + 159171411 ATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99490226 3 + 122082543 ATT i mm10.chr11 C 0 C 0 s canFam3.chr9 39319597 3 - 61074082 ATT i canFam3.chr9 C 0 C 0 e chlSab2.chr16 9900282 3 - 75148670 I e rheMac3.chr16 53064503 3 + 80904711 I a score=3822.000000 s hg38.chr17_JH159146v1_alt 82964 2 + 278131 TA s panTro4.chr17 66203878 2 - 82630442 TA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24733107 2 - 73212453 TA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47952761 2 - 81552678 TA i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112745891 2 + 159171411 TA i calJac3.chr5 C 0 C 0 s mm10.chr11 99490229 2 + 122082543 TA i mm10.chr11 C 0 C 0 s canFam3.chr9 39319600 2 - 61074082 TA i canFam3.chr9 C 0 I 191 e chlSab2.chr16 9900282 3 - 75148670 I e papAnu2.chr16 47632194 0 + 74645514 C e macFas5.chr16 52587116 0 + 80997621 C e rheMac3.chr16 53064503 3 + 80904711 I a score=206699.000000 s hg38.chr17_JH159146v1_alt 82966 151 + 278131 AAACTATTTCCCATTATTCAGGCTTACTTAGTACAGAATTATGATATAACCATCATTTCTGACACAATCTTCATGGTAATAAGTG---GATGAAGATGGGTTGAGAAACGATATATGAGGCATAGGTTTTTTACTGAGTGTTGTAATTAATCAC s panTro4.chr17 66203880 151 - 82630442 AAACTATTTCCCATTATTCAGGCTTACTTAGTACAGAATTATGATATAACCATCATTTCTGACACAATCTTCATGGTAATAAGTG---GATGAAGATGGGTTGAGAAACGATATATGAGGCATAGGTTTTTTACTGAGTGTTGTAATTAATCAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24733109 151 - 73212453 AAACTATTTCCCATTATTCATGCTTACTTAGTACAGAATTATGATATAACCATCATTTCTGAGACAATCTTCATGGTAATAAGTG---GATGAAGATGGGCTGAGAAATAATATATGAGGCATAGGTTTTTTACTGAGTGTTGTAATTAATCAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47952763 151 - 81552678 AAACTATTTCCCATTATTCAGGCTTGCTTAGTACAGAATTATGATGTAACCATCATTTCTGAGACAATCTTCATGGTAATAAGTG---GATGAAGATGGGTTGAGAAATGGTATATGAGGCATAGGTTTTTTACTGAGTGTTGTAATTAATCAC i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112745893 151 + 159171411 GAACCATTTCCCCTTATGCACACTTACTTAGTACAGTATTATGATACAACCATCATTTCTGAGACAACCTTCATGGTAATAAGTG---GATGAAGATGGGTTGAGAAATGACATATGAGGCATAGTTTTTTCACTGAGTGTTGTAATTAATCAC i calJac3.chr5 C 0 C 0 s mm10.chr11 99490231 150 + 122082543 AAACTTCTTCTCACTCTTTGGCTTTGCTTAATGTAATATTGTGGTGCAGTCACTGTTTCCGAGACATCCTTCACAGTCATAAAAG---GATGCGGATGGATTGAGAAACAAGATATGAGGCGTATATTTTAAACCCTGTGTTGTAA-TAATCAC i mm10.chr11 C 0 C 0 s canFam3.chr9 39319793 153 - 61074082 AAATTATTTCCT-CTGTTCAGGCTTACTTGGTATAATATTATGATATAGTCACTTTTTCTGGGACATCCTTCACAGTAATGAATGTATTATGAGGATGGATTGAGACATAATTTGTGAAGCATAGGTTTTGCATTGTGTGTTGTCATTAATCAC i canFam3.chr9 I 191 C 0 e chlSab2.chr16 9900282 3 - 75148670 I e papAnu2.chr16 47632194 0 + 74645514 C e macFas5.chr16 52587116 0 + 80997621 C e rheMac3.chr16 53064503 3 + 80904711 I a score=119632.000000 s hg38.chr17_JH159146v1_alt 83117 30 + 278131 CCAGATTCTCCTG-AAGGCCCTCAGTTCATT s panTro4.chr17 66204031 30 - 82630442 CCAGATTCTCCTG-AAGGCCCTCAGTTCATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24733260 30 - 73212453 CCAGATTCTCCTG-AAGGCCCTCAGTTAGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47952914 30 - 81552678 CCAGATTCTCCTG-AAGGCCCTCAGTTCATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53064506 30 + 80904711 CCAGATTCTCCTG-AAGGCCCTGAGTTAATT i rheMac3.chr16 I 3 C 0 s macFas5.chr16 52587116 30 + 80997621 CCAGATTCTCCTG-AAGGCCCTGAGTTAATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47632194 30 + 74645514 CCAGATTCTCCTG-AAGGCCCTGAgttaatt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9900285 30 - 75148670 CCAGATTCTCCTG-AAGGCCCTGAGTTAAtt i chlSab2.chr16 I 3 I 279 s calJac3.chr5 112746044 30 + 159171411 CCAGATTCTCCTG-CCGGCCCTGAGTTCATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99490381 30 + 122082543 TTAGATTCTCCCC-AAGGCCCTGAGTTCATT i mm10.chr11 C 0 C 0 s canFam3.chr9 39319946 31 - 61074082 GAGGATTCTCCCCTAAGGCTCTGAGTTCATT i canFam3.chr9 C 0 C 0 a score=2809551.000000 s hg38.chr17_JH159146v1_alt 83147 827 + 278131 CTTTTAAAAGCA----AGTTGGCATATTCTTGCAGCATTGTTGCTTCAGGATGTTTGAT---CTACTAGGGAGAGGAAAACAGAATGTTT--GACTGTAAACAAAAATGCCAAATATAGTCCGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTGTG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAGCTCAACTTGTT-ATCAACCTTTTGAGTGATATTTAATATACCTAAAGTGAGGGTACGGGAGAACTGTATCCACTCAGAGCATTTCACCAAGGTCCAGGAAGGA--TAAGCCCCAGGTAATTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggaggttggggtagatAGA-CAACCTCAACTTTAAAGAGTTTCTTTCTTCAAGTGTAGAGAAAACACAATGTTAGAGGTAAAAATCCAGAAAAGAGTGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTCAATCTCAGAACCCAGAATTCCAGGTCATCTGAAGGGTGGGCAGGTTGCTCCCCACACCCCCCATTGCACCTACTCACTTTTCT-------------CAATTCTGTTCCAAAGGATTTAGAC-------------AATGATTAGgtctcagtctccttatctgtaagttgagaatacaaatacctgctccacacagttgtgaggattaaatgagacaatgtgtatgaagtatgtgatgtgtggttaatgatgcaagtataatgcattatctttattCATACTAAGTGTCA--TTTTTATATGAGGTGGGCTAGGCAGCACTACACTGTAGTGAAATTTATGAGGCTACTGGaaacagacctgagttag s panTro4.chr17 66204061 827 - 82630442 CTTTTAAAAGCA----AGTTGGCATATTCTTGCAGCATTGTTGCTTCAGGATGTTTGAT---CTACTAGGGAGAGGAAAACAGAATGTTT--GACTGTAAACCAAAATGCCAAATATAGTCTGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTGTG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAGCTCAACTTGTT-ATCAACCTTTTGAGTGATATTTAATATACCTAAAGTGAGGGTACGGGAGAGCTGTATCCACTCAGAGCATTTCACCAAGGTCCAGGAAGGA--TAAGCCCCAGGTAATTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggaggttggggtagatAGA-CAACCTCAACTTTAAAGAGTTTCTTTCTTCAAGTGTAGAGAAAACACAATGTTAGAGGTAAAAATCCAGAAAAGAGTGAAATTCAAAGCCAAAGAAATTTCCT--------ATTCAATCTCAGAACCCAGAATTCCAGGTCATCTGAAGGGTGGGCAGGTTGCTCCCCACACCCCGCATTGCACCTACTCACTTTTCT-------------CAATTCTGTTCCAAAGGATTTAGAC-------------AATGATTAGgtctcagtctccttatctgcaagttgagaatacaaatacctgctccacacagttgtgaggattaaatgagacaatgtgtatgaagtatgtgatgtgtggttaatgatgcaagtataatgcattatctttattCATACTAAGTGTCA--TTTTTGTATGAGGTGGGCTAGGCAGCACTACACTGCAGTGAAATTTATGAGGCTACTGGaaacagacctgagttag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24733290 825 - 73212453 CTTTTAAAAGCA----AGTTGGCATATTCGTGCAGCATTGTTGCTTCAGGATGTTTGATCTCCTACCAGGGAGAGGAAAATAGAATGTTT--GACTGTAAACCAAAATGCCAAATATCATCTGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTATG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAA-TTTTAAACTCAACTTGTT-ATCAGCTTTTTAAGTGACATTTAATATACCTAAAGTGAGGATGCGGGAGAGCTGTATCCACTCAGAGCATTTCACCAAGGTCCAGGAAGGA--TAAGCCCCAGGTAATTGTGGGac------ctccttgcacctctgttttctcgtcttcaaatgagggaggttggggtagatAGA-CAACCTCAACTTTAAAGAGTTGCTTTCTTCAAGTGTAGATAAAACACAATGTTAGAGGTAAAAATCCAGAAAAGAGTGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTCAATCTCAGAACCCAGAATTCCAGGTCGTCTGAAGGGTGGGCCGGTTGCTCCCCACATCCCCCATTGCACCTACTCACTTTTCT-------------CAATTCTGTTCCAAAGGATTTAGAC-------------AACGATTAGgtctcagtctccttatctataagttgagaatacaaatacctgctccacacagttgtgaggattaaatgagacaatgtgtatgaagtatgtgttgtgtggttaatgatgcaagtataatgcattatctttattCATAC----TGTCA--TTATTGTATGAGGTGGGCTAGGCAGCACTACACTGTAGTGAAATTTATGAGGCTACTGGaaacagacctgagttag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47952944 830 - 81552678 CTTTTAAAAGCA----AGCTGGCATATTCGTGCAGCATTGTTGCTTCAGGATGTTTGATCTCCTACCAGGGAGAGGAAAATAGAATGTTT--GACTGTAAACTAAAATGCCAAATATAGTCCGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTATG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAATTTAACCTGTT-ATCAACTTTTTGAGTGACATTTAATACACCTAAAGTGAGGGTGCGGGAGAGCTGTATCCACTCAGAGCATTTCACCAAGGTCCAGGAAGGA--TAAGCCCCAGGTAGTTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggaggttggggtagatAGA-CAACCTCAACTTTAAAGAGTTGCTTTCTACCAGTGTAGAGAAAACACAATGTTAGAGGTAAAAATCCAGAAAAGAGTGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTCAATCTCAGAACCCAGAATTCCAGGTCATCTGAAGGGTGGGCAGGTTGCTCCCTACACCCCCCATTGCACCTACTCACTTTTCT-------------CAATTCTGTTCCAAAGGATTTAGAC-------------AACGATTAGgtctcagtctccttatctataagttgagaatacaaatacctgctccacacagttgtgaggattaaatgagacaatgtgtatgaagtatgtgttgtgtggttaatgatgcaagtataatgcattatctttattCATACTAAGTGTCA--CTTTTGTATGAGGTGGGCTAGGCAGCACTATACTACAGTGAAATTTATGAGGCTactggaaatagacctgagttag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53064536 827 + 80904711 CTTTTAAAAGCA----AGTTGGTATATTCGTGCAACATTGTTGCTTCAGGATGTTTGATCTCCTACCAGGGAGAGG-AAATAGAATGTTT--GACTGTAAACCAAAATGCCAAATATAGTCTGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTATG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAACTCAACTTCTT-ATCAACTTTTTGAGTGACATTTAATACACCTAAAGTGAGGGTGCGGGAGAGCTGTATCCACTCAAAGCATTTCACCAAGATCCAGGAAGCA--TAAGCCTCAGGTAACTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggagtttggggtagatAGA-CAATCTCAACTTTAAAGAGTTGCTTTCTTCAAATGTAGAGAAA--ACAGTGTTAGACGTAAAAATCCAGAAAAGAATGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTTAATCTCAGAACCCAGAATTCCAGGTCTTCTGAAGGGTGGGCAGGTTGCTCCCCA-AGCCCCCATTGCACCTACTTACTTTTCT-------------CAGTTCTGTTCCAAAGGATTTAGAC-------------AACGATTAGgtctcagtctccttatctataaattgagaataaaaatacctgctccacacagttgtgaggattaaatgagataatgtgtatgaaatatgtgttgtgtggttaatgatgcaagtataacgcattatctttattCATCCTAAGTGTCA-TTTTTTGTATGAGGTGGGCTAGGCAGCACCACACTGTAGTGAAATTTATGAGACTACTGGaaacagacctgagttag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52587146 827 + 80997621 CTTTTAAAAGCA----AGTTGGTATATTCGTGCAACATTGTTGCTTCAGGATGTTTGATCTCCTACCAGGGAGAGG-AAATAGAATGTTT--GACTGTAAACCAAAATGCCAAATATAGTCTGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTATG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAACTCAACTTCTT-ATCAACTTTTTGAGTGACATTTAATACACCTAAAGTGAGGGTGCGGGAGAGCTGTATCCACTCAAAGCATTTCACCAAGATCCAGGAAGCA--TAAGCCTCAGGTAACTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggagtttggggtagatAGG-CAATCTCAACTTTAAAGAGTTGCTTTCTTCAAATGTAGAGAAA--ACAGTGTTAGACGTAAAAATCCAGAAAAGAATGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTTAATCTCAGAACCCAGAATTCCAGGTCTTCTGAAGGTTGGGCAGGTTGCTCCCCA-AGCCCCCATTGCACCTACTTACTTTTCT-------------CAGTTCTGTTCCAAAGGATTTAGAC-------------AACGATTAGgtctcagtctccttatctataaattgagaataaaaatacctgctccacacagttgtgaggattaaatgagataatgtgtatgaaatatgtgttgtgtggttaatgatgcaagtataacgcattatctttattCATCCTAAGTGTCA-TTTTTTGTATGAGGTGGGCTAGGCAGCACCACACTGTAGTGAAATTTATGAGACTACTGGaaacagacctgagttag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47632224 827 + 74645514 cttttaaaagca----aGCTGGTATATTCGTGCAACATTGTTGCTTCAGGACATTTGATCTCCTACCAGGGAGAGG-AAATAGAATGTTT--GACTGTAAACCAAAACGCCAAATATAGTCCGATTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTATGACTATG---TCCAA-TTCTG-GATTTCAAAAggattgaattaatttttaaactcaaCTTCTTAATCAACTTTTTGAGTGACATTTAATACACCTAAAGTGAGGGTGCAGGAGAGCTGTATCCACTCAGAGCATTTCACCAAGATCCAGGAAGCA--TAAGCCTCAGGTAACTGTGGGAC------CTCCTTgtacctctgttttctcatcttcaaatgAGGGAGTTTGGGGTAGATAGA-CAATCTCAACTTTAAAGCGTTGCTTTCTTCAAATGTAGAGAAA--ACAGTGTTAGACGTAAAAATCCAG-AAAGAATGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTTAATCTCAGAACCCAGAATTCCAGGTCTTCTGAAGGGTGGGCAGGTTGCTCCCCA-ACCCCAAATTGCACCTACTTACTTTTCT-------------CAGTTCTGTTCCAAAGGATTTAGAC-------------AACGATTAGGTCTCAGTCTCCTTATCTACAAATTGAGAATAAAAATACCTGCTCCACacagttgtgaggattaaatgagataatatgtatgAAATATGTGTTGTGTGGTTAATGATGCAAGTATAACGCATTATCTTTATTCATCCTAAGTGTCA-TTTTTTGTATGAGGTGGGCTAGGCAGCACCACACTGTAGTGAAATTTATGAGACTACTAGAAACAGACCTGAGTTAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9900594 828 - 75148670 cTTTTAAAAGCA----AGTTGGTATATTCGTGCAACATTGTTGCTTCAGGATGTTTGATCTCCTACCAGGGAGAGG-AAATAGAATATTT--GACTGTAAACCAAAATGCCAAATATAGTCCGACTGAGAATCATTCAAGGTGTTTTATTTATGATACTCCTGTGACTATG---TCCAA-TTCTG-GATTTCAAAAGGATTGAATTAATTTTTAAACTCAACTTCTT-ACCAACTTTTTGAGTGACATTTAATACACTTAAAGTGAGGGTTCGGGAGAGCTGTATCCACTCAGAGCATTTCACCAAGATCCAGGAAGCA--TAAGCCTCAGGTAACTGTGGGac------ctccttgcacctctgttttctcatcttcaaatgagggagtttggggtagatAGA-CAATCTCAACTTTAAAGCGTTGCTTTCTTCAAATGTAGAGAAA--ACAGTGTTAGACGTAAAAATCCAGAAAAGAATGAAATTCAAAGCCAAAGAAGTTTCCT--------ATTTAATCTCAGAACCCAGAATTCCAGGTCTTCTGAAGGGTGGGCAGGTTGCTCCCCA-ACCCCAAATTGCACCTACTTACTTTTCT-------------CAGTTCTGTTCCAAAGGATTTAGAC-------------AACAATTAGgtctctgtctccttatctataaattgagaataaaaatacctgccccacacagttgtgaggattaaatgagataatgtgtatgaaATATGTGTTGTGTGGTTAATGAGGCAAGTATAATGCATTATCTTTATTCATACTAAGTGTCATTTTTTTGTATGAGGTGGGTTGGGCAGCACCACACTGTAGTGAAATTTATGggactactggaaacagacctgagttag i chlSab2.chr16 I 279 C 0 s calJac3.chr5 112746074 802 + 159171411 GTTTTAGAAGCA----AGTTGATATAGTTGTGC-GCATTTTTGCTTCAGGATGTTTGATCTTCTCCCAGGGAGAGAAAAATAGAA----------TGTAAAACAAACTGCCAAACAGAGTCCTATAGTGAATCACTCAAGGTGTTTTATTTATAATACTCCTATGACTGTGAAATCCAA-TTCTG-GATTTCAAAGGGATTGAATTAATTTTAAAACTCAACTTCTT-ATCAACTTTTTGAGTGACATTTAATATACCTAAAGTGAGGGTGCAGGAGAGCTGTGTCCACTCAGAGCATTTCACCAAGATCCAGGAAGGA--TAAGCCCCAGGTAATTGTGGGac------ctccttgcacctctgttttctcatcttcaaatga--------ggggtggataga-caacctcAACTTTAAAGAGTTGCTTTCTTCAAATGTAGAGAAA--ACA-TGTTAGACGTAAAAATCCAGAAAAGAGTGGAATTCAAAGCCAAAGAAGTTTCCT--------ATTTATTCTCAGATCCCAGAATTCCGGGTCATCTGAAGGGTGGGAAGGTTGGTCCCAACACACCCCATTGCACCTACTCACTTTTCT-------------CAATTCTGTTCCAAAGGATTTAGAC-------------AACAActaggtctcagtctccttgtctatacattgagaataaaaatacctgctccacacagttgtgagaattaaatgagataatgtgtatgaaaTATGTGTTGCATGATTAACGATTCAAGTGTAATGCATTACCTTTATTCATAATAAGTGTTA--TTTTTGTATGAGGTAGGCTAGGCAGCACCACACTGTAGTGAAATTTATGAGGCTGCTAGAAACAG----------- i calJac3.chr5 C 0 C 0 s mm10.chr11 99490411 786 + 122082543 CTATGAAAATCT----AGTTGATGCATTAGCAGAGTATCATTGCCCCAAGGCATGTAATCTCCCACTCAGGAGACA----------ATTT--GACCATGCTTCCAAATGTCAAAT--------ACCAAGAATCA-TCAGGGAGTTTTAGAAACGATATTCCTATTGCTGTG---TCCAATTTCTGTGTTTTCAAAAGGTTTAGATTAATTTCTGAACTACGTTTCTC-ACAGACTTTCTGAGTAGCATTTAACATTGC-AAAATGAGGATA----AAATGTCTATTTATTCAGAGTACTTCATCAGGACAGAGGAGAGA--CCAGCCCCAGGTGACTGAGGAAT------CCCTTAGGACCT-------------------GGCAGAATGACAGGAATGACAGG--AACCTCAACCTCCAAGAGTGACACTCTTCCAAACCAGAGAAGATGAAACATCCAAAGTACAAGTCGAGAAAAACATGAACTTTGA--------------CCT--------ATTTGGCCCGAGAATCCAGAGGTCT-GCCCCTGTTGAGAGTGGGCTGGCTGTCTTT---ACTCATAGTTGAACCTACTC-CTTATCTCCGTCCCCGCCCCCAATTCCATTCTAAAGAATTTAGAAAAGCAGGTATAAGAAGTATCCagtttcagtcccctggtctggaagttggggataaaaatatttgcctcccagatctgtgagaattgaacgTTGTGAACTATGTGTGACATGGGCTGTTCTGTCAACCCGCC--GCATGATCCATGGGACTAAGACATGC---ATTTCA--TCTTTGTATGAGGCTATTGAGTTGGTATCACGCAG-GGTGGAGGTT---GGATCATTTGAAACAGACCTGAGGGGA i mm10.chr11 C 0 C 0 s canFam3.chr9 39319977 756 - 61074082 CTTTTAAAAAAAATGGAGTTGGTGTATTAGTATAGCATTGTTGCTCCAGGGTGTATAATCTTGTTCCAAGAAAAAGAAAATAGGATTTTTTAAATAATGAACCACAGTGCCAAATATAGTACTATTGAGAG-CATTCTAAA------ATACATG-TATCCTTATGACCATG---TCTAA-TTCGA-TATTTCAAAAGGATTGGATTAATTTTTGAACTAATTTTCTT-ATAGATCTTTTGAGTAATATTTAGGATTCCTATGGTGGGACAAAAGGATA-CTATATCTGCAGATAGCATTTCATCA-GGCCTGGGAAGGGGTTGACCCCTATATTGTAGTGGGTTATCATATTCTTTGGGCCTCTGTTTTCTTGCCTGTGAGTCAAGGAGGTC---ACAGATAGAATAACCTCAACTTCAAAGAATTGTTTTCTTCAAACATGAAAAAA------TGCAATTAAAATAAATCTAGAAAAGAGTGGAATTCAAACCTGAATTTAATTGATAACCCAGAATTTAAGGTCAGAACCCAGAATCCTGGGGCA----------------------------AGCC---------CCCACTCACTTTTCT-------------CAATTCTGTTTCAAAGAATTTAGGC-------------CACCAATCagtctcagtctcctcatctataaattgggggtaaga-----------------------------aATGAGATAATGTGTATGAAATGTATGTCATAGGATTAGC-----------AGTGCATTATTTCTACTAACAAGCAGCACTA--TTTTTGTAGAAGATAGGCTAGTGAGCACCATGCAGT-GTGGAAACTGTGAGACCATTAGAAGCAGATCTgagttag i canFam3.chr9 C 0 I 102 a score=4395311.000000 s hg38.chr17_JH159146v1_alt 83974 1229 + 278131 aatcccacctctgcttcttgctgatggctttggatggctatttcactttttt-ccaagcttccatttccttaCAGGGTTCTTGC-AGAATCAAATAAAATAatatggaacatttccatcattgcagaaaactcttggatagtgttgACAtgtgtatt-aaatatccagcaggatgcctaggtacataataagtgctcagtaaacatttCCCTCTCTTTCCTCCC---TTTCTTTTTT--TTAAATCTCTTCCGCGAGCTCATAAATTATTTGACT-GGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAATT-CCTCCTTTCTACAACCAAAGCAACTTTAT---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTTGTTTTTTTTTTTTTTTCATAAAGACAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCATTGTGAAATAATAT-ATATAAATATTGGAAACTTGTGATACCCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGGGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAACATAACCTATGAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTATGAGACATCCCAGAAGGTATTTGCTTAGC------------------TTTTTTGAGGTTTGGTTAAAGAGTTCG----GTTTTTTTTG------AACAAGGTCTTTATAG-CCATCTCAACTCTCAGATTCTAAAAATTATGCTC-ATTTTATTATTAT--------TGGTTCTAGCAATATGCCATTGTCAGAACT------GTGAGCAACTTTA--CTGCAAGCAACCCACAAACGGAAATATCTAGGGATGTCATGATGACCTATATGCTGGTGT---GGTGACAAC-TTTTAGGCATAATCTTCAAAATAGTGTAA--CAGCCTTT-TGTCGATGGATAACCACATTGTT-CAAAAAAGTTTGAGGTGGAGCAGAACTGAGGTAATGAGAAAGTAAACACTCTCTTATGCCTGGTGCACTGAGCATGCAGCATGAACACCA--------GCCCTTATCATTTCTATGACATCGTTGGGTCATAAGTGACAT-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-TGGTCTGTGAGAAATCA-GTAGT s panTro4.chr17 66204888 1225 - 82630442 aatcccacctctgcttcttgctgatggctttggatggctatttcactttttttccaagcttccatttccttaCAGGGTTCTTGC-AGAATCAAATAAAATAatatggaacatttccatcattgcagaagactcttggatagtgttgACAtgtgtatt-aaatatccagcaggatgcctaggtacataataggtgctcagtaaacatttCCCTCCCTTTCCTCCC---TTTCTTTTTT--TTAAATCTCTTCCGCTAGCTCATAAATTATTTGACT-GGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAACT-CCTCCTTTCTACAACCAAAGCAACTTTAG---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTTGTTTTTTTTTC-----CATAAAGACAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATAATAT-ATATAAATATTGGAAACCTGTGATACCCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGGGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAAAATAACCTCTGAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTATGAGACATCCCAGAAGGTATGTGCTTAGC------------------TTTTTTGAGGTTTGGTTAAAAAGTTCG----TTTTTTTTTT------AAGAAGGTCTTTATAG-CCATCTCAACTCTCAGATTCTAAAAATTATGCTC-ATTTAATTATTAT--------TGGTTCTAGCAATATGCCATTGTCAGAACT------GTGAGCAAATTTA--CTGCAAGCAACCCACAAACGGAAATATCTAGGGATGTCATGATGACCTATATGCTGGTGT---GGTGACAAC-TTTTAGGCGTAATCTTCAAAATAGTATAA--CAGCCTTT-TGTCGATGGATAACCACATTGTT-CAAAAAAGTTTGAGGTGGAGCAGAACTGAGGTAATAAGAAAGTAAACACTCTCTTCTGCCTGGTGCACCGAGCATGCAGCATGAATACCA--------GCCCTTATCATTTCTATGACATCGTTGGGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGATTT-TGGTCTGTGAGAAATCA-GTAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24734115 1222 - 73212453 aatcccacctctgcttcttattgatggctttggatggctatttcactttttt-ccaagcttccatttccttaCAGGGTTCTTGC-AGAATCAAATAAAATAatatggaacatttccatcattgcagaaaactcttggatggtgttgACAtgtgtatt-aaatatccagcaggatgcctaggtacataataagtgctcagtaaacatttCCCTCCCTTTCCTCCC---TTTCTTTTTT--TAAAATCTCTTCTGCTAGCTCATAAATTATTTGACT-GGTTCTAACCTTGAATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAATT-CTTCCTTTCTACAACCAAAGCAACTTTAT---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTTGTTTTTTTTT------CATAAAAACAACCATGCACTATATAGTTAAGGTAATG--ACAGTCAGTTATCAGGTTGATTATTCAATAATTAGGGTTCATTACAAGAACAGATTTGTATTATCTTGACTGGTCTTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATAATAT-GTATAAATATTGGAAACTTGTGATACCCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGGGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGTTAGCTTTAAAAAATAACCTATGAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTATGAGACATCCCAGAAGGTATGTGCTTAGC------------------TTTTTTGAGGTTTTGTTAAAGAGTTC-----TTTTTTTTTG------AAGAAGGTCTTTATAG-CCATCTCAACTCTCAGATTCTAAAAATTATGCTC-ATTTTATTATTAT--------TGGTTCTAGCAATATGCCATCCTCAGAACT------GTGAGCAACTTTA--CTGCAAGCAACCCACAAACGGAAATATCTAGGGATGTCATGATGACCTATATGCTGGTGT---GATGACAAC-TTTTAGGCGTAATCTTCAAAATAGTACAA--CAGCCTTT-TGTCAATGGATAACCACATTGTT-CAAAAAACTTTGAGGTGGAGCAGAACTGAGGTAATGAGAAAGTAAACACTCTCTTATGCCTGGTACACTGAGCATGCAGCATGAATACCA--------GCCCTTATCATTTCTGTGACATCGTTGGGTCACAAGCGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-TGATGTGTGAGAAACAG-ACCAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47953774 1221 - 81552678 aatcccacctctgcttcttgctgatggctttggatggctatttcactttttt-ccaagcttccatttccttaCAGGGTTCTTGC-AGAATCAAATAAAATAatatggaacatttccatcattgtagaaaactcttggatggtgttgACAtgtgtatt-aaatatctagcaggatgcctaggtacataataagtgctcagtaaacatttCCCTCCCTT-----CC---TTTCTTTTTT--TTAAATGTCTTCTGCTAGCTCTTAAATTATTTGACC-TGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAATT-CCTCCTTTCTACAACCAAAGCAACTTTAT---TAAGC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTGTTTTTTTTTTTT----CATAAAGACAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACGAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTATAAAATAATAT-GTATAAATATTGGAAACTTGTGATACCCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGGGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAAAATAACCCGTGAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTATGAGACATCCCAGAAGGTATGTGCTTAGC------------------TTTTTTGAGGTTTGGTTAAAGAGTTAG--TTTTTTTTTTTG------AAGAAGGTCTTTATAG-CCATCCCAACTCTCAGATTCTAAAAATTATGCTC-ATTTTATTATCAT--------TGTTTCTAGCTATATGCCATTCTCAGAACT------GTGAGCAACTTTA--CTTCAAGCAACCCACAAACGGAAATATCTAGGGATGTCATGATGACCTATATCCTGGTGT---GGTGACAAC-TTTTAGGCATAATCTTCAAAATAGTATAA--CAGCCTTT-TGTCAATGGATAACCACATTGTT-CAAAAAACTTTGATGTGGAGCAGAACTGAGGTAATGAGAAAGTAAACACTCTCTTATGCCTGGTGCACCGAGCATGCAGCATGAATACCA--------GCCCTTATCATTTCTATGA-ATCGTTGGGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-CGGTCTGTGAGAAATCA-ATAGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53065363 1223 + 80904711 aatcccacctctgcttcttgctgatggctttggatggctatttcactttttt-ccaagcttccatttccttacagggttcttgc-agaatcaaataaaataatatggaacatttccatcattgaagaatgctcttggatggtgt---tatgtgtatt-aaatattcagcaggatgcctaggtacataataagtgctcaataaacatttCCCTCCCTTTCCTCCC----TTTTTTTTTGGTTAAATCTCTTCTGCTAGCTCCTAAATTATTTGACC-GGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAATT-CCTCCTTTCTACAACCAAAGCAACTTTAC---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTTG--TTTTTTTTT----CATAAAGGCAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATAATATGGTATAAATATTGGAAACTTGTGATGCTCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGAGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAAAATAACCTATAAGATGATTGGATTCCTTCTACTTCTAGCCAATGTTATGAGACATTCCGGAAGGTGTGTGCTTAGT------------------TTTTTTGGGGATTGGTTACAGAGTTA-----GTTTTTTTTG------AAGAGGGTCTTTATAG-CCATCCCAACTCTCAGGTTCTAAAAATTATGCTC-GTTTTATTATTAT--------TGTTTCTAGTGGTATGCCATTCTCAGAACC------GTGAGCAACTTTA-TCTTCAACCAACCCACAAGCGGAAATATCTAGGGATGTCACGGTGACCTATATGCTGGGGT---GGTGACAAC-TTTTAGGTGTAATGTTCAAAATCATCTAA--CAGCCTTT-TGTTAACGGATAACCACATTGTT-CAAAAAAATTTGAGGTGGAGCAGAACTGAGGTAATGAGAAGGTAAACACTCTCTTATCCCTGGTGCACTGAGCATGCAGCACGAATACTG--------GCCCTTATCATTTCTATGACATCGTTGGGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-TGGTGTGTGAGAAATCAGGTAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52587973 1224 + 80997621 aatcccacctctgcttcttgctgatggctttggatggctatttcactttttt-ccaagcttccatttccttacagggttcttgc-agaatcaaataaaataatatggaacatttccatcattgaagaatgctcttggatggtgt---tatgtgtatt-aaatattcagcaggatgcctaggtacataataagtgctcaataaacatttCCCTCCCTTTCCTCCC----TTTTTTTTTGGTTAAATCTCTTCTGCTAGCTCCTAAATTATTTGACC-GGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAATCTTCAATT-CCTCCTTTCTACAACCAAAGCAACTTTAC---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCTTG-TTTTTTTTTT----CATAAAGGCAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATAATATGGTATAAATATTGGAAACTTGTGATGCTCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGAGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAAAATAACCTATAAGATGATTGGATTCCTTCTACTTCTAGCCAATGTTATGAGACATCCCGGAAGGTGTGTGCTTAGT------------------TTTTTTGGGGATTGGTTACAGAGTTA-----GTTTTTTTTG------AAGAGGGTCTTTATAG-CCATCCCAACTCTCAGGTTCTAAAAATTATGCTC-GTTTTATTATTAT--------TGTTTCTAGTGGTATGCCATTCTCAGAACC------GTGAGCAACTTTA-TCTTCAACCAACCCACAAGCGGAAATATCTAGGGATGTCACGGTGACCTATATGCTGGGGT---GGTGACAAC-TTTTAGGTGTAATGTTCAAAATCATCTAA--CAGCCTTT-TGTTAACGGATAACCACATTGTT-CAAAAAAATTTGAGGTGGAGCAGAACTGAGGTAATGAGAAGGTAAACACTCTCTTATCCCTGGTGCACTGAGCATGCAGCACGAATACTG--------GCCCTTATCATTTCTATGACATCGTTGGGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-TGGTGTGTGAGAAATCAGGTAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47633051 1228 + 74645514 AATCCCACCTCTGCTTCTTGCTGATGGCTTTGGATGgctatttcactttttt-ccaaGCTTCCATTTCCTTACAGGGTTCTTGc-agaatcaaataaaataatatggaacatttccatcattgaaGAATGCTCTTGGATGGTGT---TATGTGTATT-AAATATTCAGCAGGATGCCTAGgtacataataagtgctcaataaacatttctctccctttcctccctttttttttttttggttaaatctCTTCTGCTAGCTCCTAAATTATTTGACT-GGTTCTAACCTTGTATTTGTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCatttgc-aaaaatcttcaatt-CCTCCTTTCTACAACCAAAGCAACTTTac---taaac------------aaaaaaacatgatGAGGACTGTTGAgtcaccttgttttttttttt----cataaaggcaACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTGACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATAATATGGTATAAATATTGGAAACTTGTGATGCTCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGAGAATTTTCTGGGACTGCTTTATATAAGAGGGGAGTTAGATAGCCTTAAAAAATAACCTATAAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTATGAGACATCCCGGAAGGTGTGTGCTTAG-------------------TTTTTTGGGGATTGGTTACAGAGTTA-----GttttttttG------AAGAGGGTCTTTATAG-CCATCCCAACTCTCAGGTTCTAAAAATTATGCtc-gttttattattat--------tgtttctagTGGTATGCCATTCGCAGAACC------GTGAGCAACTTTA-TCTTCAACCAACCCACAAGCGGAAATATCTAGGGATGTCACGGTGACCTATATGCTGGGGT---GGTGACAAC-TTTTAGGTGTAATGTTCAAAATCATCTAA--CAGCCTTT-TGTTAACGGATAACCACATTGTT-CaaaaaaaTTTGAGGTGGAGCAGAACTGAGGTAATGAGAAGGTAAACACTCTCTTATCCCTGGTGCGCTGAGCATGCAGCACGAATACTG--------GCCCTTATCATTTCTATGACATCGTTGGGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTCTAAAG-------------------------------------ATGTTTT-TGGTGTGTGAGAAATCAGGTAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9901422 1229 - 75148670 aatcccacctctgcttcttgctgatggctttggatggctatttcaggttttt-ctaagtttccatttccttacagggttcttgc-agaatcaaataaaataatatggaacatttccatcattgcagaatgctcttgggtggtgttgatatgtgtatt-aaatattcagcaggatgcctatgttcatagtaagtgctcaataaacattTCCCTCCCTTTCCTCCT---TTTTTTTTTTGGTTAAATCTCTTCTGCTAGCTCGTAAATTATTTGACC-GGTTCTAACCTTGTATTTCTTTTGGGAGTCATGGTCTCCCTTTGCTCTCCATTTGC-AAAAGTCTTCAATT-CCTCCTTTCTACAACCAAAGCAACTTTAC---TAAAC------------AAAAAAACATGATGAGGACTGTTGAGTCACCCTGTTTTTTTTTTT----CATAAAGGCAACCATGCACTATATAGTTAAGGTAATT--ACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTACAAGGACAGATTTATATTATCTTCACTGGTCCTTCCTACATTCAAGCAAGGATGACTGAGCGTTGTGAAATGATATGGTATAAATATTGGAAACTTGTGATACTCTTTCTAGG-----GGAGGTTAAATCATGGTCTTACAGAGAATTTTCTGGGATTGCTTTATATAAGAGGGGAGTTAGATAGCTTTAAAAAATAACCTATAAGATGATTGGATTCCTTCTACTTCTAGCTAATGTTGTGAGACATCCCGGAAGGTGTGTGCTTCGT------------------TTTTTTGGGGATTGGTTACGGAGTTA-----GTTTTTTTTG------AAGAGGGTCTTTATAG-CCACCCCAACTCTCAGGTTCTAAAAATTATGCTC-ATTTTATTATTAT--------TGTTTCTAGTGGTATGCCATTCTCAGAACT------GTGAGCAACTTTA-TCTTCAACCAACCCACAAGCGGAAATATCTAGGGATGTCACGGTGACCTATGGGCTGGGGT---GGTGACAGC-TTTTAGGTGTAATGTTCAAAATAGTCTAA--CAGCCTTT-TGTCGACGGATAACCACATTGTT-CAAAAAAATTTGAGGTGGAGCAGAACTGAGGTAATGAGAAGGTAAACACTCTCTTATCCCTGGTGCACTGAGCATGCAGCACGAATACTG--------GCCCTTATCATTTCTATGACATCGTTGCGTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACATTTTAAAG-------------------------------------ATGTTTT-TGGTGTGTGAGAAATCAGGTAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112746876 1226 + 159171411 -ATCCCACCTCTGCTTCTTGCTGATGGCTTTGGATGGCTAGTTCACTTTTCCCCCGAGCTTCCATTTCCTTACA-GGTTGTTGC-AGAATCAAATAAAATAatatagaatatttccatcattgcagaaagctcttggatggcgttgATAtgtgtatt-aaatatccagcatgatgcctaggtacgtaataagtgctcaataaacatttCCCTCCCTTTTCTCCC---TGTCTTTT----TAAAATCTCTTCTGCTAGCTCATAAGTTATCTGACCGGGGTCTAACCTTGTATTTCTTTTGGAAGTCTTGGTTTCCCTTTGTTCTCCATTTGT-AAAAATCCTCAATTCCCTCCTTTCTACAACCAAAGCAAGtttat---taaacaaaaaaaaaaaaaaaaaaaCATGATGAGGACTGTTGAGTCACCTTGTTTTTTT--------CATCAAGACAACCATGCACTATATAGTTAAGGTAATTACACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCCTTACTAGGACAGATTTATATTATCTTGACTGGTCCTTCTTACATTCAAGCAAGAA----TGAGCGTTGTGAAATAATATGGTGTAAATATTGGAAACTTGTGATGCCCTTTCTAGG-----GGAGGTTAAATCATGGTCTTA----GAATTTTCTGGGATGGTCGTATCTAAGAGGGGTGTTAGATAGCTTAAAAAAAGAACCTGTGAGATGATTGGATTCCTCCTACTTCTAGCTAATGTACGGAGACATCCCAGAAGGTATGTGCTTAGG------------------TTTTTTGAGGTTTGGTTAAAGAGTTAGTTTTTTTTTTTTTG------AAGAAGTTCTTTATAA-CCATCCCAACTCACAGATTCTAAAAATTATGCTT-GTT------TTAT--------TGTTTCTAGCAATATGCCATTCTCAGAACT------GTGAGCAACGTTA-TCTGCAAGCAACTCACAAACGTAAATACCTCGGGATGTCATGGTGACCTTTATGCTGGTGC---GGTGACAAA-TTTTAGGCATAATCTTCAAAATAGTGTAACTCAGCCTTT-TGTTGGTGGATAACCACATTGCT-CACAAAACTTTGAGGTGGAGCAGGAC---GGTAATGAGAAAGTAAACACTCTCTTATGCCTGGTGCACTGAGCATGCGGCGTGAATACTC--------CTCCTTATCATTTCTATGACGTTGTTGGTTCATAAGTGACAC-TAAACAGCAGCTGGTTGCCTCACAGTTTTAAG-------------------------------------GTGTTTT-TGGTGTGTGAGAAATCAGATAGT i calJac3.chr5 C 0 I 326 s mm10.chr11 99491197 1198 + 122082543 AGTCCCACC-CTGCCCTTGGCTGCTGGCTTGGA--GGTTATTTCACAGTTTT---GAACTTTAGTTTCCTAACAGAGTTGC--A-AGAATTACGTCAGATAACATAGATGAGTCCAGTTGTGGCAGAAAGCCCTT------------CGCACAGATT-TAACACCCTCCACACCGCAC-GGCATACAGGAAATGCTCAATAATTGTTCCCTCCCCTTTCTTTCC---TCTCCCTACT--TC---TCTCTCTGGTTGGACTGCCTGCTGTTGGAGC-AGGTGTAATCTGGTATTTCTTTTGGGAGTCATGCTCCCA----GCTTTCCATCTGT-AGACATCATCTTTCCCCTCCATTCTAAAACCAAAGCAACTTCAT---GAAAC------------GAAAAAACAGCGTGAGGA-TGTTGAGTCACCTTGTTTTCTT--------CACAGAGACGACCGCGCACTCTGTAGTTAAGGCAATTACGCACTTGGTTATTAGGCCGATTATTCAATAATTAGGGGTCATTACAAGGACAGATTTATGTTATCTTGATTGGTCCTTCCTACATTCAAGCAAAGATGGCTGAGCATTGTGAAATAATATGGTATTAATATTGGAAGCCTGCAATGGCCTTTCCGGGGGTGCGGGGGTTAAATCATGCTC-----------------------CTTCATACAA-AGGGAAGGGTTATAGCTTTAAGAACACAACTGTGAGATGACTGTCACCCCTCTGCTTGTATCC---------AGGCATCCCAGAAAGTAGAAGCTGAGC------------------ATCTTAGGTGTTTGACTGGGAAGCATG----GTATTCTTTG------GGAAG----------------CCCATCTCTCCAGTTTTTAA----ATGCCCAATTTTACTATTCTCACCCCCCCACCCCCAGCAATATGCCTTTATCAGAAGT------GTGACCCACTTTA-TCTTTTAGCAGTTCCTAGA--AAAATATCCAGGGATGTCC--ACGATCTATCTGCTGCTGG---AGAGACAGCTTTTTCCGCATGACCTACACAGTAGCGTAACTCAGCCTTT-TGTTGATAGAGAGTCACACTGTC-GTCAGGCCTCTGAGGTGGAGCAGAACTGATCTGATTTGGAAGCAAATTCTCTCCTGGGCCTTGTGTACCGAGGGTGCACCCTGCATAGCA--------G-CCTTATCATTTCTGTGATGTCGTTGGATCTTACGTGATACTTGCACGGTGACAGGCTGTCTGACACTCCTAAGGCTCACATATTTGGTTCACCCCCCGCCCCACCCCCCCATGTTTTAAAGTGTGTAGAAAACCAGGCAGT i mm10.chr11 C 0 I 1 s canFam3.chr9 39320835 1211 - 61074082 aaTCTCATGCCTGCCTCTTGCTGGTGGCTTTTGGTGGCAACGTCACACCTCT---GAACTCCAGGGTGTTTACAGGGTCATTGTAAGAATTGAATAAGGTAACATCGAATGTTTCCATCAGTGCAAAAAGCTCTTGGATGGTGTCAATATGTGCATTAAAACATCCAACATCAAGGAT-GGTATACAGGAAGAGCCCAATTAATACTTTCCTCCCT--CTTCCC---TGTTCCCTCC-------TCTCTCCTGTCAGTTAGTGAATTATTTGACT-AGGTTTGACCTCATGTTTATTCTGGAAGTTAGGTTCTCA----GCTGTCCATTTGCAAAAAAACTTCTGTTCTCTCCATTCTAAAACAAAAGTAACTTTATTTATGAAA------------AAAAAATTATGATGAGGTTTGTTGAGTCACCTTGTTTTTTC--------CATAAAGACAACCATGTACTATATAGTTAGGGTAATTACACAGTCAGTTATTAGGTTGATTATTCAATAATTAGGGTTCATTATGAGGACAGATTTATGTTATCTTGATTGGTCTTTTCTACATTCAAGCAAGGACAACTGAGGGTTGAGAAATAATACTGTATAAATATTGGAAAC---------CCTTTCTAGG-----ATGGGTAAAATCATGATCTTATGGGGAATTTTCTGGGACCACTTTACATAAGAGGAAAGTTACATAGCTTTAAAAAATAACTTGTGAGCTAACTGGATTCCCTCCACTTCCAG----TATTGTTAGATGTCTCGGAAGATAGGAGCTCAGCttttttttttttttttttttttttAACGTTTGGGTGAAAATTTT-----TTTTTTTTTATGTTTTAAAGAAGTCTCCATAACCCATCCTAACTATAAGATTCCAAAAATTATGCTC-ATTTTATTATTTT-----------TTCTAGCAATATGCCCTT-TCAGAACTTGGTGCAGGAGGAACTCAGAGCTTCTAGTAGCCCTCAAAAGGAAATATCCGGGGATGTCAGAATGATGTATCTGCCAAAGCTAGAGTGACAGC-TTTTAGGTACGATCTCCGAGAG---TTAACTCAGCCTTTCTTTCTGTGGGTAATCATGCTGTCGCCAGGACTTTTGAGGTGGAGCAGAACTGATGTAATGAGAAAGTAAATGCCCTCTTGTGTCTTGTGCACTGAGCATGAGGAATGAATACCATGATACCGGCCCTTATCATTACTATGACATTACTGGGTCATAACTGATAC-TGGACAGCAGCTGGTTGCCCTACATTTT------------------------------------------------------------------------ i canFam3.chr9 I 102 C 0 a score=1615986.000000 s hg38.chr17_JH159146v1_alt 85203 428 + 278131 CTCATTTTTGAA--ACAGTCTGTAGCACTTCTATCATTTTTGCTGCCTTCTTTTTCTACATTATCCATGGACAGTAGACTAATTAAACAAAACAGACGTTTCCCA----CTCCAAATTTAAGATATAATAAGAAAACATCCCCCAAAACCTTTGTGC-ACAATTACTTCAAGCG-----CTGATGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTCATTTTTCCTCC--CGAGGGTCCCCTGGCAAAGCAGCCCCATCTGGATCTCCAGGGTC--ACCCAGCATCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCATTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC s panTro4.chr17 66206113 428 - 82630442 CTCATTTTTGAA--ACAGTCTGTAGCACTTCTATCATTTTTGCTGCCTTCTTTTTCTACATTATCCATGGACAGAAGACTAATTATACAAAACAGACGTTTCCCA----CTCCAAATTTAAGGTATAATAAGAAAACATCCCCCAAAACCTTTGTGC-ACAATTACTTCAAGCG-----CTGATGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTTTTCCTCC--CGAGGGTCCCCTGGCAAAGCAGCCCCATCTGGATCGCCAGGGTC--ACCCAGCATCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCATTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24735337 425 - 73212453 T---TTTTGGAA--ATAGTCTGTAGCACTTGTATCATTTTTGCTGCCTTCTTTTTCTACATTATCCATGGACAGAAGACTAATTATACAAAACAGACATTTCCAA----CTCCAAATTTAAGGTATAATAAGAAAACATCCCCCAAAACCTTTGTGC-ACAATTACTTCAAGCG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTTTTCCTCC--CCAGGGTCCCCCGGCAAAGCAGCCCCATCTGGAGCTCCAGGGTC--ACCCAGCATCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCGTACTGGGAATAATCTTTCTTACTGCTGGGATCTCTCTGCTGGTGCCATTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTT i ponAbe2.chr17 C 0 I 94 s nomLeu3.chr19 47954995 428 - 81552678 CTCATTTTTGAA--ACAGTCTGTAGCACTTCTATCATTTTTGCTGCCTTCTTTTTCTACATTATCCATGGACAGAAGACTAATTATACAAAACAGACGTTTCCAA----CTCCAAATTTAAGGTATAATAAGAAAACATCCCCCAAAACCTTTGTGC-ACAATTACTTCAAGTG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTTTTCCTCT--CGAGGGTCCCCCGGCAAAGCAGCCCCATCTGGAGCTCCAGGGTC--ACCCAGCATCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCATTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53066586 428 + 80904711 CTCATTTTCGAA--ACAGTCTGCAGCACTTCTGTCATTTTTGCTGCCTTCTTTTTCTACATTATCCAGGGACAGAGGATTAATTATACAGAACAGACGATTCCAA----CTCCAAATTTAAGGTATCATAAGAAAACATCCCCCAAAACCTTTGTGC-ACCATTACTTCAAGCG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTCCTCCTCC--CGAGGGTTCCCAGGCAAAGCAGCCCCACCTGGAGCTCCCGGGTT--ACCCGGTCTCTTACCTGCTCCTGCAGGTGTGTGATGCTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCACTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52589197 428 + 80997621 CTCATTTTCGAA--ACAGTCTGCAGCACTTCTGTCATTTTTGCTGCCTTCTTTTTCTACATTATCCAGGGACAGAGGATTAATTATACAGAACAGACGATTCCAA----CTCCAAATTTAAGGTATCATAAGAAAACATCCCCCAAAACCTTTGTGC-ACCATTACTTCAAGCG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTCCTCCTCC--CGAGGGTTCCCAGGCAAAGCAGCCCCACCTGGAGCTCCCGGGTT--ACCCGGTCTCTTACCTGCTCCTGCAGGTGTGTGATGCTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTTTGCTGGTGCCACTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47634279 428 + 74645514 CTCATTTTCGAA--ACAGTCTGCAGCACTTCTGTCATTTTTGCTGCCTTCTTTTTCTACATTATCCAGGGACAGAAGATTAATTATACAGAACAGACGATTCCAA----CTCCAAATTTAAGGTATCATAAGAAAACATCCCCCAAAACCTTTGTGC-ACCATTACTTCAAGCG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTCCTCCTCC--CGAGGGTTCCCAGGCAAAGCAGCCCCACCTGGAGCTCCCGGGTT--ACCCGGTCTCTTACCTGCTCCtgcaggtgtgtgatgttctcctcatACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCACTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9902651 428 - 75148670 CTCATTTTCGAA--ACAGTCTGCAGCACTTCTGTCATTTTTGCTGCCTTCTTTTGCTACATTATCCAGGGACAGAAGATTAATTATACAGAACAGACGATTCCAA----CTCCAAATTTAAGGTATACTAAGAAAACATCCCCCAAAACCTTTGTGC-ACCATTACTTCAAGCG-----CTGTTGCCATTT-TCCTGGAAATTGTCTTCTGGA----CTGATTACTCCTCC--CGAGGGTTCCCAGGCAAAGCAGCCCCACCTGGAGCTCCCGGGTT--ACCCAGTCTCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCATACTGGGAATAATCTTTCTTACTGCCAGGATCTCTCTGCTGGTGCCACTTCAGGATGCGGCTTTCCAGCTTCGTGTTGGCCTCCTCCAGGGCGCGAACCTTCTCCAGGTAGGAGGCCAGGCGGTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112748428 425 + 159171411 CTCATGTTTGAA----AGTCTGTGCCACTTCTGTCATTATTGCCACCTTCTTTTTCTACATTGTCCATGGATAGAAGATTAATTATACAAAACAGATGTTTCCAA----GTCCAAATTTAAGGTATAGTAAGGAAACATCTCTCAAAACCTTTGTGT-ACAATTACTTCAATCC-----CTGTTGCAAATT-TCCTGAAAATCGTCTTCTGTA----CTTATTTTTCCTCC--TGAGGATCCCCCAGCAAAGCAGCCCCACCTGGAACTCCAGGGTC---CCCAGCGTCTTACCTGCTCCTGCAGGTGTGTGATGTTTTCCTCGTATTGGGAATAATCTTTCTTACTGACAGGATCTCTCTGCTGGTGCCACTTCAGGATGCGGCTTTCCAGCTTCATGTTGGCCTCCTCCAGGGCGCGCACCTTCTCCAGGTAGGAGGTCAGCCGGTC i calJac3.chr5 I 326 C 0 s mm10.chr11 99492396 428 + 122082543 TTGCTGTTTAAAAGATAGTGTATAGTAAATCTGAAATGTTTGCTGTCTGGTTT--CTACATCATTTGCAGAGAGGAAATTATTTTTATA-AACAGATTTCCCCGAATCCATCCATACTTAAGCTATAGCAGTAAGA--------------TTTGGGTGAGCAGTACTTGAGCTGAGTTCTTTTTGCTGTTTGCCCTGGGAACTGCCATGCACACAGTCTGGTTCCCCCTCCCTCTATCCTCTCTGGGTATGGCAGTACCAT----AGCTACAGGGTCTCTCTCAGTGTCTTACCTGCTCCTGCAGGCGGCTGATGTTTTCCTCATACTGGGAATAATCCTTTCTGTGGCTGGGTTCTCTCTCCTGATGCCACCTTAGTATACGGGTTTCCAGCTTCGAGTTAGCCTCCTCTAGAGCCCGCACCTTCTCCAGATATGTGGCCAGGCGATC i mm10.chr11 I 1 C 0 s canFam3.chr9 39322046 379 - 61074082 -------TTGGA---------------------------------------TTCTCTGTATAATTTATGTATAGAAGATGAAATACACAAACCAGGCTTTCCCGA----GTCCAA----AAGGTATAACAGGAAAATATCCTCAAATACCTTTGTTC-ACAATTACTTTCAGCT-----CTTTTGACATTT-TCCTGGAAATTGTCTTTTGTA----CTGATTTCTCCTCC--C-ATGGCTCTCTGGAAATGCAGCCCCCTCTTGAGTTCCAGGGGC--ACCCACAATCTTACCTGCTCTTGCAGGTGGCTGATGTTTTCCTCATACTGGGAGTAATTTTGCTTACTGCCAGGATCTCTCTGCTCGTGCCACTTCAAGATGCGACTTTCGAGCTTCTCGTTGGCCTCCTCCAGGGCACGTACCTTGTCCAGGTAGGAAGCCAGGCGGTC i canFam3.chr9 C 0 C 0 a score=56638.000000 s hg38.chr17_JH159146v1_alt 85631 14 + 278131 GTTGAGATTCTGCA s panTro4.chr17 66206541 14 - 82630442 GTTGAGATTCTGCA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47955423 14 - 81552678 GTTGAGATTCTGCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53067014 14 + 80904711 GTTGAGATTCTGCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52589625 14 + 80997621 GTTGAGATTCTGCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47634707 14 + 74645514 GTTGAGATTCTGCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9903079 14 - 75148670 GTTGAGATTCTGCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112748853 14 + 159171411 GTTGAGGTTCTGCA i calJac3.chr5 C 0 C 0 s mm10.chr11 99492824 14 + 122082543 GTTGAGATTCTGCA i mm10.chr11 C 0 C 0 s canFam3.chr9 39322425 14 - 61074082 ATTGAGGTTCTGCA i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24735762 94 - 73212453 I a score=1618423.000000 s hg38.chr17_JH159146v1_alt 85645 379 + 278131 TGGTGGCCTTC-----------CCATTTCCGCCTAGTAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGGGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGCTCCCCCCGCACCGCCATGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCACCTCCGGCGCCATGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGTGTCCGGAGTTCATGGTCCCATCTGTGTTTGGGACGGGGCTGAGCTCTGCTCCACTCCCTGGCAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCAACAAGATTGTATCATTGTGC s panTro4.chr17 66206555 379 - 82630442 TGGTGGCCTTC-----------CCATTTCCGCCTAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGCTCCCCCCGCACCGCCATGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCACCTCCGGCGCCATGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGTGTCCGGAGTTCATGGTCCCATCTGTGTTTGGGACGGGGCTGAGCTCTGCTCCACTCCCTGGCAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCAACAAGATCGTATCATTGTGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24735856 379 - 73212453 -----------NNNNNNNNNNNCCATTTCCGCATAGAGGGGGATTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGCTCCCCCCGCACCGCCATGGACGGTGGGAGCCCGGGGGAAGCTCCTGGGCCGGCCCCAGCCACCTCCAGCACCATGGAAGGAGGCCGAGGGAGTCTGGCTGAAGCTGTGTCCGGAGTTCATGGTCCCATCTGTGTTTGGGACGGGGCTGAGCTCTGCTCCACTCCCTGGCAC-CGCAGAACTGAGCCGCCCTAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCAACAAGATCGTATCATTGTGC i ponAbe2.chr17 I 94 C 0 s nomLeu3.chr19 47955437 379 - 81552678 TAGTGGCCTTC-----------CCATTTCCGCCTAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGCTCCCCCCGCACCGCCATGGACGGTGGGAGCCCGGGGGAAGCTCCTGGGCCGGCCCCAGCCACCTCCGGCACCATGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGTGTCCGGAGTTCATGGTCCCATCTGTGTTTGGGACGGGGCTGAGCTCTGCTCCACTCCCTGGCAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGATGGGTTTTATGGGCCTCTGCTGT-GGAGTTCCCTTCGCTGACCATTGTACCAACAAGATCGTATCACTGTGC i nomLeu3.chr19 C 0 M 100 s rheMac3.chr16 53067028 379 + 80904711 GGGTGGCCTTC-----------CCATTTCCGCCTAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGTTCCCCCTGCACCGCCGTGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCATCTCCGGTGCCGTGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGCTTCTGGAGTTCATGGTCCCATCTGTGTTTGGGATGGGGCTAGGCTCTGTTCCACTCCCTGGTAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCGACAAGATCGTATCATTGTGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52589639 379 + 80997621 GGGTGGCCTTC-----------CCATTTCCGCCTAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGTTCCCCCTGCACCGCCGTGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCATCTCCGGTGCCGTGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGCTTCTGGAGTTCATGGTCCCATCTGTGTTTGGGATGGGGCTAGGCTCTGTTCCACTCCCTGGTAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCGACAAGATCGTATCATTGTGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47634721 379 + 74645514 GGGTGGCCTTC-----------CCATTTCCGCCCAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACACTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGTTCCCCCTGCACCGCCGTGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCATCTCCGGGGCCGTGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGCTTCTGGAGTTCATGGTCCCATCTGTGTTTGGGATGGGGCTGGGCTCTGTTCCACTCCCTGGTAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCGACAAGATCGTATCATTGTGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9903093 379 - 75148670 GGGTGGCCTTC-----------CCATTTCCGCCTAGGAGGGGGCTGCTTCTTCCAGAACCCCAAGACCCTCCAGCGGGTGGGCAGCTCCGCGTGGTGAAGGACAGGGAGATGCGGGTTCCCCCTGCACCGCCGTGGACGGTGGGAGCCCTGGGGAAGCTCCTGGGCCGGCCCCAGCCATCTCCGGTGCCGTGGAAGGAGGCCGAGGGGGTCTGGCTGAAGCTGCGTGTGGAGTTCATGGTCCCATCTGTGTTTGGGATGGGGCTGGGCTCTGTTGCACTCCCTGGTGC-CGCAGAACTGAGCCGCCCCAGACCGCCCTGGATGGTTTTAT-GGCCTTTGCTGTGGGAGTTCCCTTCTCTGACAATTGTACCGACAAGATCGTATCATTGTGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112748867 378 + 159171411 TGGTGGCCTTC-----------CCATTTCCACCTAGGAGGGGGCTGCCTCTTCCAGAATCCCACGACCCTGTGGTGGGTAGGCAGCCCCGCGTGGTGAAGGACAGGGAAACTTGGGTTCCCCCTGCACCGCCATGGACACTGGGAGCCCGGGGGAAGCTCCTGGGCCGGCCCCAGCCCCCTCCCGCGCCATGGAAGGAAGCCGAGGGGGTCTGGCTGAAGCTGTGTCTGGAGTTCATGGTCCCATCTGTGTTTGGGACAGGGCTGGGCTCTGCTCCACTCCCTGGCAC-CGCAGAACTGAGCCGCCCCAGACTGCCCTGGATGGTTTTAT-GCCCTTTGCTGTGGGAGTG-CCTTCTCTGACAATTGTAGCAACAAGATCGTATCATTGTGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99492838 374 + 122082543 TGGTGGCCTTG-----------CCATTGCCACCTAGCAGGGGACTGCTTCTTCCAGACCCCCATGATCCTCCAGGAGGCAGGCAGCCTGGCGTGGTGAAGGAAAGGGAGATGCGGACACCCCCTGCGCCTCCATGGACACTCGGTGCCCGATGGCAGCTCCCCTGCCGCCCCCGGGTGCTTCCGAGGCTGTGGACAGAGGCCGAGTAGGTCTGGTTAAAGCTGTGGCTGGAGTTCATGGTCCCATCTGTGTATGGAGCAGGGCTA------TCTCAGCTCTCTGACGCTCACAGGACTGAACTGCCTCAGACTGCTTGAGATGGTTTTAT-GCCCTTTGCTGTGGGAGTTTCCTTCTCTGACAACTGTACCGACAAGATCCTATCATTGTGC i mm10.chr11 C 0 C 0 s canFam3.chr9 39322439 379 - 61074082 TCACTTCCTTC-----------CCACTTGCACCCGGGAGGGAATTGCCTTTTCTAGATCCCCAAGGCCCTCCAGGAGGCAGACACCTTGGTGAGCTGAAGGAAAGGGAGATGCGGACACCCCCAGCCCCCCCATGGACACTGGGAGCCCGAGGGAAGCTCCCCAGCTGGCCCCAGCTGCCTCCTGTGCCACGGAGGGAGCCTGAGGGGGTCTGGCTAAATTTATGGCTGGAGTTCATGGTCCCATCTGTGTTTGGTGCAGGGCTGGGCTCTGCTCTGCTCCCTGGCAC-TGCACAACTGAGCCGCCTCAGACTGCCCTGGATGGTTTTAT-GCCCTTTGCTGTGGGAGTTTCCTTCTCTGACAACTGTACCAACAAGATCGTATCATTGTGC i canFam3.chr9 C 0 C 0 a score=716087.000000 s hg38.chr17_JH159146v1_alt 86024 225 + 278131 AACTTGTGTTTCCTCTTGGTCAATCCCAAAGTGCCCCTGGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATATGACAGTTTGCTTCCTCCCTTCCCCTGGTAACCCGGAGGTGTGGCCCACGACATCAGGCGGGTATTGGG-CTCAGGTATCTTTCTAATCTTGCCGTGAAGTTTTTCCATTGTTCATTTACCTGGAATGGGTTAGGTTAAAGTCCACCC s panTro4.chr17 66206934 225 - 82630442 AACTTGTGTTTCCTCTTGGTCAATCCCAAAGTGCCCCTGGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATATGACAGTTTGCTTCCTCCCTTCCCCTGGTAACCCGGAGGTGTGGCCCACGACATCAGGCGGGTATTAGG-CTCAGGTATCTTTCTAATCTTGCCGTGAAGTTTTTCCATTGTTCATTTACCTGGAAAGGGTTAGGTTAAAGTCCACCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24736235 225 - 73212453 AACTTGTGTTTCCTCTTGGTCAATCCCAAAGTGCCCCTGGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATATGACAGTTTGCTTCCTCCCTTCCCCTGGTAACCCGGAGGTGTGGCCCACGACATCAGGCGGGTATTAGG-CTCAGGTATCTTTCTAATCTTGCCGTGAAGTTTTTCCATTGTTCATTTACCTGGAAAGGGTTAGGTTAAAGTCCACCC i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53067407 223 + 80904711 AACCCGTGTTTCCTCTTGGTCAATCCCACAGTGCCCC-GGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATGTGACAGTTTGCTTCCTCCCTTCCCCTGGTAA-CCGGAGGTGTGGCGCACGACATCAGGTGGGTGTTAGG-CTCAGGTATCTTTCTAATCTTGCTGGGAAGTTTTTCCATTGTTCATTTACCTGGAAAGGGTTAGGTTAAAGTACACCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52590018 223 + 80997621 AACCCGTGTTTCCTCTTGGTCAATCCCACAGTGCCCC-GGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATGTGACAGTTTGCTTCCTCCCTTCCCCTGGTAA-CCGGAGGTGTGGCGCACGACATCAGGCGGGTGTTAGG-CTCAGGTATCTTTCTAATCTTGCTGGGAAGTTTTTCCATTGTTCATTTACCTGGGAAGGGTTAGGTTAAAGTACACCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47635100 223 + 74645514 AACCTGTGTTTCCTCTTGGTCAATCCCACAGTGCCCC-GGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAATGTGACAGTtggcttcctcccttcccctggtAA-CCGGAGGTGTGGCGCTCGACATCAGGCGGGTGTTAGG-CTCAGGTATCTTTCTAATCTTGCTGGGAAGTTTTTCCATTGTTCATTTACCTGGAAAGGGTTAGGTTAAAGTACACCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9903472 223 - 75148670 AACCTGTGTTTCCTCTTGGTCAATCCCACAGTGCCCC-GGGCCTTCGCAC---AC--TGTTGTTGTTTAGAGCCACATCAGTGTGACAGTTTGCTTCCTCCCTTCCCCTGGTAA-CCGGAGGTGTGGCGCACGACATCAGGCGGGTGTTAGG-CTCAGGTATCTTTCTAATCTTGCTGGGAAGTTTTTCCATTGTTCATTTACCTGGAAAGGGTTAGGTTAAAGTACACCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112749245 222 + 159171411 AACGTGAGTTTCCTCTTGGTCAATCCCGAAGTGCCCCTGGGCCTCCGCAC---AC-----TGTTGTTTAGGGCGACATCCATATGACAGTTTGCTTCCTCCCTTCTCCTGGTAACCCAGAGGTGTGGCCCACGATATCATGTGGGTATTAGG-CTCAGGTGTCTTTCTAATTTTGCCGTGACGTTTTTCCATGGTTCGTTTATCTGGAAAGGGTCAGGTCAAAGTCCACCA i calJac3.chr5 C 0 C 0 s mm10.chr11 99493212 226 + 122082543 AATGTGTGTTTCCTCTTGGTCAATCCGGAGGTGCCCCTGGGCCAACACACTCTGC--TGTTGTTGTTTAGAACCACGTGAATATGCCAGTT-ACCACCTCCCTCCCAGTGGTAACCCGGAGGCGTGGCCCAGGCCACCAGGTGGGTAGCAGATCTCAGATGTCTTTCTAATCTCGCAGTGGAAAATTTCCAATGTACATTCGCCCAAAAAAGGTCAGATTAAAGTCCAC-- i mm10.chr11 C 0 C 0 s canFam3.chr9 39322818 224 - 61074082 AACAGGTGTTTCCTCTTGGCCAATCTTGAAGTGCCCCTGGGCCTTCACAC---ACATTGTTGTTGTTTAGAACCACATCAATATACCAGTTTGCTG-CTCCCTTCTAGTTGTAACCGGGAGGTGTGGCCCACAACATGAGGTAGGTATTAGT-CTCAGGTGCCTTTCTAATCTTTCTGTGGAAATTTTCCTTTGACTATTTATTTGAAAAGGATCAGACTGAAGTTTAC-- i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 47955816 100 - 81552678 M a score=147880.000000 s hg38.chr17_JH159146v1_alt 86249 42 + 278131 AAAAGAAAGCATATTCGATGTAGTATAGATTTCC----TTaaaaaa s panTro4.chr17 66207159 42 - 82630442 AAAAGAAAGCATATTCGATGTAGTATAGATTTCC----TTaaaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24736460 42 - 73212453 AAAAGAAAGCATATTCGGTGTAGTATAGATTTCC----ttaaaaaa i ponAbe2.chr17 C 0 I 21 s nomLeu3.chr19 47955916 42 - 81552678 AAAAGAAAGCATATTCGGTGTAGTATAGATTTCC----TTAaaaaa i nomLeu3.chr19 M 100 C 0 s rheMac3.chr16 53067630 42 + 80904711 AAAAGAAAGCATATTCGGTGTAGTATAGATTTCC----TTaaaaaa i rheMac3.chr16 C 0 I 22 s macFas5.chr16 52590241 42 + 80997621 AAAAGAAAGCATATTCGGTGTAGTATAGATTTCC----TTAAAaaa i macFas5.chr16 C 0 I 2 s papAnu2.chr16 47635323 38 + 74645514 AAAAGAAAGCATATTCGGTGTAGTATAgatttcc----ttaa---- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9903695 42 - 75148670 AAAAGAAAGCATATTCGTTGTAGTATAGATTTCC----TTaaaaaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112749467 46 + 159171411 AAAAGAAAGCATATTTGGTATAGTATAGATTTCCTTTTTTAAAAAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99493438 33 + 122082543 -------AGTAAGACTGGTGTGGTATAGCTTTTC----TTTTAA-- i mm10.chr11 C 0 C 0 s canFam3.chr9 39323042 39 - 61074082 ---AAAAAGGCTATTTGGTGTAGTATAGATTTGC----TTTGAAAA i canFam3.chr9 C 0 C 0 a score=-15124.000000 s hg38.chr17_JH159146v1_alt 86291 21 + 278131 aaccaaaaaccaaaacc-----aaaa s panTro4.chr17 66207201 21 - 82630442 aaccaaaaaccaaaacc-----aaaa i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47955958 26 - 81552678 aaacaacaaaaaaaacccccaaaaaa i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52590285 10 + 80997621 ----aacaaacaaa------------ i macFas5.chr16 I 2 C 0 s papAnu2.chr16 47635361 4 + 74645514 ----------aaaa------------ i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9903737 4 - 75148670 ----------caaa------------ i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112749513 1 + 159171411 -------------A------------ i calJac3.chr5 C 0 C 0 s canFam3.chr9 39323081 2 - 61074082 ------------AG------------ i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24736502 21 - 73212453 I e mm10.chr11 99493471 0 + 122082543 C e rheMac3.chr16 53067672 22 + 80904711 I a score=12325.000000 s hg38.chr17_JH159146v1_alt 86312 20 + 278131 caaaacaacaacaacagcaa s panTro4.chr17 66207222 20 - 82630442 ccaaacaacaacaacagcaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24736523 20 - 73212453 CAAaacaacaacaacaacaa i ponAbe2.chr17 I 21 C 0 s nomLeu3.chr19 47955984 20 - 81552678 caaaacaacaacaacaacaa i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52590295 18 + 80997621 caaacaaacaaaaaacGC-- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47635365 18 + 74645514 caaacaaacaataaacgc-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9903741 16 - 75148670 caaacaaacaa-aaacg--- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39323083 0 - 61074082 C e mm10.chr11 99493471 0 + 122082543 C e calJac3.chr5 112749514 0 + 159171411 C e rheMac3.chr16 53067672 22 + 80904711 I a score=2355439.000000 s hg38.chr17_JH159146v1_alt 86332 608 + 278131 caaaaaaccaGACATTAAACAACAGAGATACACACACCTTTTTCCACCCCCAATAAGC----CCCACCTCTAAAGGGAGGGTGAGCGAGCCTGGAGAAGGGAAAGCCAGCTCAGAACAGGATCTCAGGTCCCAGAATAAAGCT--TGCTGTGCTG-AGGCAGCCGAGAAGGTGGTGAATATCTGATGCCTTTGTGGCAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATGTAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGATTTCCCTTGG-CCCTGGGGGAGGAATGTAGCCGTTGTT--------AGCAGCCCCGGACCCCGGCTGAG-CCTGCCACGGCTGGGCTCTGTG----------TGTCTGTGACCTGCAG-AGGGACGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGTTGGATTTAAAGGGGACTTAC s panTro4.chr17 66207242 606 - 82630442 caaaaaACCAGACATTAAACAACAGAGATACACACACCTTTTTCCACCCCTAATAAGC----CCCACCTCTAAAGGGAGGGTGAGCGAGCCTGGAGAAGGGAAAGCCAGCTCAGAACAGGATCTCGGGTCCCAGAATAAAGCT--TGCTGTGCTG-AGGCAGCCGAGAAGGTGGTGAATATCTGATGCCTTTGTGGCAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCGGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGATTTCCCTTGG---CTGGGGGAGGAACGTAGCCGTTGTT--------AGCAGCCCCGGACCCTGGCTGAG-CCTGCCACGGCTGGGCTCTGTG----------TGTCTGTGACCTGCAG-AGGGACGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGTTGGATTTAAAAGGGACTTAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24736543 604 - 73212453 caaAAAACCAGACATTAAACAACAGAGATATACACACCTTTTTCCATCCCCAATAAGC----CCCACCTCTAAAGGGAGGGTGAGCGAGCCTCGAGAAGGGAAAACCAGCTCAGAACAGGATCTCAGGTCCCAGAATAAAGCT--CGCTGTGCTG-AGGCAGCCGAGAAGGTGGTGAATATCTGATGCCTTTGTGGCAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACATCTCAAAACCAAACAACCCTGGCCTGTGCTCAGGATTTCCCTTGG-CCCTGGGGGAGGAATGTAGCCGTTGTT--------AGCAGCCCCGGACCCTGGCTGAG-CCTGCCACGGCTGGGTTCTGTG----------TGTCTGTGACCTGCAG-AGGGACGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATG----AAGAAGCAGTCTGGGGGT-GGGAGCCACGTGCTAGTTACTGGCAGTTGGATTTAAAGGGGACTTAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47956004 607 - 81552678 c-aaaacCCAGACATGAAACAACAGAGATACACACACCTTTTTCCACCCCCAATAAGC----CCCACCTCTAAAGGGAGGGCGAGCGAGCCTGGAGAAGGGAAAGCCAACTCAGAACAGGATCTCGGGTCCTAGAATAAAGCT--CACTGTGCTG-AGGCAGCCGAGAAGGTGGTGAATATCTGATGCTTTTGTGGCAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAAGAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGATTTCCCTTGG-CCCTGGGGGAGGAATGCAGCCGTTGTT--------AGCAGCCCCGGACCCTGGCTGAG-CCTGCCACGGCTGGGCTCTGTG----------TGTCTGTGACCTGCAG-AAGGACGATGGGAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCACCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGTTAGATTTAAAGGGGAcatac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53067694 604 + 80904711 -caaaaaacagacattaaacaac--agacacacacacGTTTTTCCACCCCCAGTAATC----TCCACCTCTAAAGGGAGGGTGAGTGAGCCT-GAGAAGGGAGAGCCAGCTCAGAACAGGATCTCGGGTCCTGGAATAAAGCT--CGTTGTGCTG-AGGCAGTTGAGAAGATGGTGAGTATCTGATGCCTCTGTGACAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGACTTCCCTTGG-CCCTCGGGGAGGAATGCAGCCGTTGTG--------AGCAGCCGGGGACCCTGGCTGAG-CCTCCCACGGCTGGGTTCTGTG----------TGTCTGTAACCTGCAG-AGGGACTATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGCTAGATTTAAAGGGGACTTAC i rheMac3.chr16 I 22 C 0 s macFas5.chr16 52590313 606 + 80997621 -CAAAAAACAGACATTAAACAACAGAGACACACACACGTTTTTCCACCCCCAGTAATC----TCCACCTCTAAAGGGAGGGTGAGTGAGCCT-GAGAAGGGAGAGCCAGCTCAGAACAGGATCTCGGGTCCTGGAATAAAGCT--CGCTGTGCTG-AGGCAGTTGAGAAGATGGTGAGTATCTGATGCCTCTGTGACAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGACTTCCCTTGG-CCCTCGGGGAGGAATGCAGCCGTTGTG--------AGCAGCCGGGGACCCTGGCTGAG-CCTCCCACGGCTGGGTTCTGTG----------TGTCTGTAACCTGCAG-AGGGACGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGCTAGATTTAAAGGGGACTTAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47635383 606 + 74645514 -caaaaaacagacattaaacaacagagacacacacacgtTTTTCCACCCCCAGTAATC----TCCACCTCTAAAGGGAGGGTGAGTGAGCCT-GAGAAGGGAGAGCCAGCTCAGAACAGGATCTCGGGTCCTGGAATAAAGCT--CGCTGTGCTG-AGGCAGTTGAGAAGATGGTGAATATCTGATGCCTCTGTGACAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGatataattaattaatgaatgacCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACAcctcaaaaccaaacaaccctGGCCTGCCCTCAGGACTTCCCTTGG-CCCTCGGGGAGGAATGCAGCCGTTGTG--------AGCAGCCGGGGACCCTGGCTGAG-CCTGCCACGGCTGGGTTCTGTG----------TGTCTGTAACCTGCAG-AGGGACGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGCTAGATTTAAAGGGgacttac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9903757 607 - 75148670 caaaaaaacagacattaaacaacagagacacacacacGTTTTTCCACCCCCAGTAAGC----TCCACCTCTAAAGGGAGGGTGAGTGAGCCT-GAGAAGGGAGAGCCAGCTCAGAACAGGATCTCGGGTCCTGGAATAAAGGC--CGCTGTGCTG-AGGCAGTTGAGAAGATGGTGAATATCTGATGCCTCTGTGACAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTCGCTCTTAAGAACAAACCCTCAATTATAGATATAATTAATTAATGAATGACCGAACCTTCCACTTCCAGGGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGCCTGCGCTCAGGACTTCCCCTGG-CCCTGGGGGAGGAATGCAGCCGTTGTG--------GGCAGCCCCGGACCCTGGCTGAG-CCTGCCACGGCTGGGTTCTGTG----------TGTCTGTGACCTGCAG-AGGGACGATGGAAAATAGGAAACCTGCCATAGGCTGTCAAATGTGGTTGATGAATCTTATATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGCTAGATTTAAAGGGGACTTAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112749514 599 + 159171411 --------CATACCTTAAACAGCAGAGATACACAAACCTTTTTCCACCCCCAATAAGC----CCCACCTCTAAAGGGAGGGTGAGCGAGCCTTGAGGAGGGAGAGCCAGCTCAGAACAGGCTCTCCGATCCTGAAATGAAGCT--AGCTGTGCTG-AGGCAGTAGAGAAGGTGCTGAATATCTCATGCCTTTGTGGCAGTCACTGTTTGAAGGAAAGTACTTTCAAAGGACTTGCTCTTAAGAACAAACCCTCAATTATAGATATAATTTATTAATGAATGACCGAACCTTCCACTTCCA-GGTGCCTTTCAT-CCCAGCACACCTCAAAACCAAACAACCCTGGACTGCGCTTAGGACTTCCCTTGGCCCCCGGGGGAGGAATGCAGCAGTTGTT--------AGCAGCCCCGGACCCTGGCTGAG-CCTGCCACTGCTGGGTTCTGTG----------TGTCTGTGACCTGCAG-AGGGATGATGGAAAACAGGAAACCTGCCATGGGCTGTCAAATGTGGTTGA-GAATCTTACATTTCATCTGCCAAGGTAAAGGTTAGGAATGAATAAAGAAGCAGTCTGGGGGC-GGGAGCCACGTGCTAGTTACTGGCAGCTAGATTTAAAGGGAACTTAC i calJac3.chr5 C 0 C 0 s mm10.chr11 99493471 607 + 122082543 -AAAAAACCAACCATTAATCTCT---CTCACACACACAGTGCTCCA-----GATAAAC--------CCTCTTACACCAGGATAAGAAAGACTTACAAGGTTAGAACCAGAACAAACCAGAATCTCAAGTCCTGGAGGAAATCTGCTCCCGTGCGGAAGGAAACAGAGAGGGCTCTGAATATCTGATTCCTTTGTGTCTGCTGCCGTTTGATGGAAAGTAATTTCAAAGGAATCACTCTTCAGAACAAACCCTCAATTACAGTCGTAATTAATTAATGAATGACTG-GCCTTCCGCTTCCAGGATGCCTTTGAT-CCCAGCACACCTCAAAACCAAACAAGCC-AGCCTGTGCCTGGGATGTCCCTGGG-CTCCAGGGAGGAAAAGATGGCTTTGCTATTTGACCAGTAGCCCTGGGCA--GTCTCTG-TTTTTTTTGGTTGAGTCCCCGGACCATTGACCTGTATGCGATCTACAGCAGGGGCTAT-GAAAACAGGAAGCCCGTCGT-GGTGGTCTGACATGTGTGATGCATCTTAACTTT---CTGCCAAGGCAGAGGTTGAGAGTGAATAATGATGTAGTTT-GGGGC-AAGGGCTCTGTGCTGGTTACTGGTGACTCCATTTAAAGATGACGTAG i mm10.chr11 C 0 I 329 s canFam3.chr9 39323083 594 - 61074082 --------TAGACGTTAA-CAACACAGACACACACACCCTCCCCTGCCCGAAATAAACAAACCCTAGCTCTAAAGCTAGGGTGGGAGAGACTCCCAAGGGAAGAACCAGATCAGA-----ATCTCAGGTCCTAGAATAAAAAT--ACTCATGCTG-AGGAAATGGAAAATGTTCTGAGTATCTGATGCCTTTGTGGCAGTTACTGTTTGATGGAAAGTAATTTCAAAGGA-TCATTCTTAAGAACAAACCCTCAATTA------TAATTAATTAATGAATGACCGAGCCTTCCACTTCCAGGGTGCCTTTCATCCCCAGCACACCTCAAAACCAAACAACCC--GCCTGCAC-CAGGACTTCCTTGGC-CCCT--GGGAGGAATGCAGCCTTTGGTAACTGGCCAGCAGCCCTG--TCCTGGCTGAGCCCTGAAAAGGCTGGCTTCTGTG----------TGTCTGTGACCTGTAA-GGCGATGGAGAAAAACAGGAAGTGTGCTATGGGTTGTCGAATGTGCTTGATGAATCTTACTCTTCGTCTGCCAAGGTAAAGGTTAGAAATGAATAAAGAAATAGTCTGGGGGTGGGGAGCCACGTGCTGGTTA-TAGCAATTAGATTTAAAGGGGACTTTG i canFam3.chr9 C 0 C 0 a score=2212625.000000 s hg38.chr17_JH159146v1_alt 86940 666 + 278131 AAat-aaaatatcag-cgcaggaagggcttctggcctttctggttccaagccactaattggacagatgaggaaagctgaggcctatg----gtg--g---t-ggggaggt-----------------------tagtggcagagccagggctagaTTCTTTCT-CCACATAGCACTGTTATCTTGGGTTGAATCTTGACAG-GTCCTGTACCACACT---------TCTCTTTCAT--AATAata--ggacttgccaattggtgtagctcttttatattctttattgaat---cctcacaac-------------------------------------tctttatgtatccagg--------------------------caagggttg-------ttgtc---------ttcattttgcagacaaagaatcagggtctcatagggatgaaTGATCCAGAGCTGATTCGCATGTACAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGAGTCTGTGCTGTCCTCCCTGCCTGGAAAGTCA-----------CTCACCCCTACCTCTTC----------TATAGTTCAA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTCTAGGAGGAAACTGCCTCTTCTGGATGCCGAGGTCCTCCAGAGGGGCAGACACCTTGGCATC------------------------CCACCTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCTAGCCAG--GCGCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACT--CCGTTCTTTCAC-----------TCCATTATACTGCAT-TTGCC s panTro4.chr17 66207848 666 - 82630442 AAat-aaaatatcag-cgcaggaagggcttctggcctttctggttccaagccactaattggacagatgaggaaagcggaggcctatg----gtg--g---t-ggggaggt-----------------------tagtggcagagccagggctagaTTCTTTCT-CCACATAGCACTGTTATCTTGGGTTGAATCTTGACAG-GTCCTGTACCACACT---------TCTCTTTCAT--AATAata--ggacttgccaattggtgtagctcttttatattctttactgaat---cctcacaac-------------------------------------tctttatgtatccaga--------------------------caagggttg-------ttgtc---------ttcattttgcagacaaagaatcagggtctcatagggatgaaTGATCCAGAGCTGATTTGCATGTACAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGAGTCTATGCTGTCCTCCCTGCCTGGAAAGTCA-----------CTCACCCCTACCTCCTC----------TATAGTTCAA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGATG-CTTTAGGAGGAAACTGCCTCTTCTGGATGCCGAGGTCCTCCAGAGGGGCAGACACCTTGGCATC------------------------CCACCTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCTAGCCAG--GTGCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACT--CCGTTCTTTCAC-----------CCCATTATACTGCAT-TTGCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24737147 665 - 73212453 AAat-aaaatatcag-cgcaggaagggcttctggcctttctggttccaagccactaattggacagatgaggaaagctgaggcctatg----gtg--g---t-ggggaggt-----------------------tagtggcagagccggggctagaTTCTTTCT-CCACATAGCACTGTTATCTTGGGTTGAATCTTGACAG-GTCCTGTACCACACT---------TCTCTTTCAT--AATAata--ggacttgccagttggtgtagctcttttatattctttactgaat---cctcacaac-------------------------------------tctttatgtatccagg--------------------------caagggttg-------ttgtc---------ttcattttgcagagaaggaatcagggtctcataggggtgaaTGATCCAGAGCTGATTTTCATGTACAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGAGTCTGtgctgtcttctctgcctggaaagtca-----------cccacccctacctcctc----------tatagttcaa-gggctacctccttcaacaatcattttctgaattctcctgcatgagttgggtgacc-ctctaggAGGAAACTGCCTCTTCTGGATGCCGAGGTCCTCCAGAGGGGCAGACACCTTGGCATC------------------------CCACCTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GCGCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGAATGAAGTC------------------------------------------------CACT--CCATTCTTTCAC------------CCATTATACTGCAT-TTATC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47956611 667 - 81552678 aaat-aaaatatcag-cgcaggaagggcttctggcctttctggttccaagccactaattggacagatgaggaaagctgaggcctatg----gtg--g---tgggggaggt-----------------------tagtggcagagctggggctagaTTCTTTCT-CCACGTAGCACTGTTATCTTGGGTTGAATCTTGACAG-GTCCTGTATCACACT---------TCTCTTTCAT--AATAGta--ggacttgccagttggtgtagctcttttatattctttattgaat---cctcacaac-------------------------------------tctttatgtatccagg--------------------------caagcgttg-------ttgtc---------ttcattttgcagacaaagaatcagggtctcataggggtgaaTGATCCAGAGCTGATTTGCATGTACAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGAGTCTGCGCTGTCCTCCCTGCCTGGAAAGTCA-----------CCCACCCCTACCTCCTC----------TATAGTTCAA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTCTAGGAGGAAACTGCCTCTTCTGGATGCCGAGGTCCTCCAGTGGGGCAGGCACCTTGGCATC------------------------CCGCCTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GCCCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACT--CCATTCTTTCAC-----------CCCATTATACTGCAT-TTGTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53068298 665 + 80904711 AAGTAaaaataccag-cacaggaagggcttctagcctatctggttccaagccactaatcagacagatgaggaaagctgaggcctgtg----gtg--g---t-ggggaggt-----------------------tagtggcagagctggggctagaTTCTTTCT-CCACATAGCACTGTTATCTGGGGTTGAATCTTGACAG-GTCCTGTACCACACT---------Tctctttcat--gaggata--ggacttgccagttgatgtagctctttcatattctttattgaat---cctcacaac-------------------------------------tctttatgtagccagg--------------------------caagggttg-------ttgtc---------ttcattttgcagacaaagaatcaaggtctcacaggggtgaaTGATCCGGAGATGATTTGCATGTGCAGTGTAATTGAGCACATGAATTCATAGGTGACGCTGCCCGTGTCTGTGCTGTCCTCCCTGCCTGGAAAGTCA-----------CCCACCCC-ACCTCCTC----------TATAGTTCCA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTGTAGGAGG-AACTGCCTCTTCCGGATGCCGAGGTCCTCCGGAGGGGCGGACACCTTGGCATT------------------------CCACTTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GCCCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACC--CCATTCTTCCAC-----------CCCATTGTACTGCAT-TTGTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52590919 665 + 80997621 AAGTAaaaataccag-cacaggaagggcttctagcctatctggttccaagccactaatcagacagatgaggaaagctgaggcctgtg----gtg--g---t-ggggaggt-----------------------tagtggcagagctggggctagaTTCTTTCT-CCACATAGCACTGTTATCTGGGGTTGAATCTTGACAG-GTCCTGTACCACACT---------Tctctttcat--gaggata--ggacttgccagttgatgtagctctttcatattctttattgaat---cctcacaac-------------------------------------tctttatgtagccagg--------------------------caagggttg-------ttgtc---------ttcattttgcagacaaagaatcaaggtctcacaggggtgaaTGATCCGGAGATGATTTGCATGTGCAGTGTAATTGAGCACATGAATTCATAGGTGACGCTGCCCGTGTCTGTGCTGTCCTCCCTGCCTGGAAAGTCA-----------CCCACCCC-ACCTCCTC----------TATAGTTCCA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTGTAGGAGG-AACTGCCTCTTCCGGATGCCGAGGTCCTCCGGAGGGGCGGACACCTTGGCATT------------------------CCACTTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GCCCAGCCAC----------------------CTCCTGCGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACC--CCATTCTTCCAC-----------CCCATTGTACTGCAT-TTGTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47635989 665 + 74645514 aaataaaaataccag-CACAGGAAGGGCTTCTAGCCTATCTGGTTCCAAGCCACTAATCGGACAGATGAGGAAAGCTGAGGCCTGTG----GTG--G---T-GGGGAggt-----------------------tagtggcagagctggggctagATTCTTTCT-CCACATAGCGCTGTTATCTGGGGTTGAATATTGACAG-GTCCTGTACCACACT---------TCTCTTTCAT--AAGGATA--GGACTTGCCAGTTGATGTGGCTCTTTCATATTCTTTattgaat---cctcacaac-------------------------------------tctTTATGTAGCCAGG--------------------------CAAGGGTTG-------TTGTC---------TTCATTTTGCAGACAAAGAATCAAGGTCTCACAGGGGTGAATGATCCGGAGATGATTTGCATGTGCAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGTGTCTGTGCTGTCCTCCCTGCCTGGAAAGTCA-----------CCCACTCC-ACCTCCTC----------TATAGTTCCA-GGGCTACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTGTAGGAGG-AACTGCCTCTTCCGGATGCCGAGGTCCTCCGAAGGGGCGGACACCTTGGCATC------------------------CCACTTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GCCCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACC--CCATTCTTCCAC-----------CCCATTGTACTGCAT-TTGTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9904364 666 - 75148670 AAATAaaaataccag-cacaggaagggcttctagcctgtctagttccaagccactaatcggacagatgaggaaagctgaggcctgtg----gtg--g---t-ggggaggt-----------------------tagtggcagagctggggctagagtcTTTCT-CTACATAGCACTGTTATCTGGGGTTGAATCTTGGCAG-GTCCTGTACCACACT---------Tctctttcat--aagaatt--ggacttgccagttgatgtagctcttttatattttttattgaat---cctaacaac-------------------------------------tctttatgtagccagg--------------------------caagggttg-------ttgtc---------ttcattttgcagacaaagaatcaaggtctcacaggggtgaaTGATCCGGAGATGATTTGCATGTGCAGTGTAATTGAGCACATGAATTCATAGGTGACACTGCCCGTGTCTGTGCTGTCCTCCCTGCTTGGAAAGTCA-----------CCCACCCC-ACCTCCTC----------TATAGTTCAAGGGGCTACCTCCTTCAACAACCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTCTAGGAGG-AACTGCCTCTTCCACATGCCGAGGTCCTCCGGAGGGGCGGACACCTTGGCATC------------------------CCACTTCATGGT-----------------------GGA----------------------------------------AGCTGGG---AGCCCCCAGCCAG--GTCCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGATGAAGTC------------------------------------------------CACC--CCATTCTTTCAC-----------CCCATTATACTGCAT-TTGTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112750113 649 + 159171411 AAAT-AAAATGTCAG-TGCAGGAAGGGCCTCTAGCCTTTCTGGTTCCAA-------------------AGGGAAACTGAGACCTATG----GTGGAG---T-GAGGAGGT-----------------------TAGTGGCAGAGCTGGGGCTGGATTCTTTCT-CCACATAGCACTGTTATCTTGAATTGGATCTTAACAG-GTCCTGTGCAACACC---------CCTCTTTCAT--AATAATG--GGACTTGCCAGTTGGGGTAGCTCTTTGATATTCTTTATTGAAT---CCTCGAAAC-------------------------------------TCTTTACACAGCCAGA--------------------------AAAGAGTTG-------TTGTC---------TTCATTCTGCTGACAGAGAATCAGGGTTTCATAGGGGTGAATGATCCAGAGCTGATTTGCATGCACAGTGTAATTGAGCACATGAATTCACAAGTGTCACTGCCTGAGTCTGTGCTGTCCTCCTTGCCTGGAAAGTCA-----------CCCACCCCTACCTCTCC----------TGTAGTTCAA-GGATGACCTCCTTCAACAATCATTTTCTGAATTCTCCTGCATGAGTTGGGTGACC-CTCTAGGAGGAAACTGCCTCTTCTGGATGCTGAGGTCCTCCA-AGGGGCAGACACCTTGGCATC------------------------CCTACTCATGGT-----------------------GGG----------------------------------------AGCTGGG---AGCCCC-AGTCAG--GCCCAGCCAC----------------------CTCCTGTGCCT-------------------------------------------------GGGGTGAAGTC------------------------------------------------CCCCCACCATTCTTTCAC-----------CCCATTATACTGCAT-TTGTC i calJac3.chr5 C 0 I 864 s mm10.chr11 99494407 894 + 122082543 AAAT-AAAATGTCAGTTATCAGAAGAGACTTTGGTGTCACTC-TTCAATGCCACCAACTGCACAGATCAGGGAAAATGAGGCCTGTA----TGG--GATAT-GGGGAGGA-----------------------TG--AACTGAGTTAGGGAAG-----------CCACATAGCACTGCTATC---AGTCACA----AAGAG-GTCCTGTACAGGACCATAATGGTACTTCTTCCAT--AATGGTAATGGACCTTC-------TCTGCCTCCTAGACATTGTTT----AAT---CCTTATAACAACTATTGGGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGGGGGCTACTGAGAATGGAGCCTATAACCAGGGGTAGGCAAACACTGCCCAGTTATAATACACTTTGCTGATAAAGGACCAGGGGTTCGCAGAGGTGAGTGATTCGAGGCT-ATTTGCATGTGCAGTGTAGTTGAGTACAAGACTTTG-------------------------TCTCTTCCTTGCAAAGATAG---------------------------------------------GTTTGA-AGGTTGTTTCCTTCAATAATCATTTTCTGAATTCTCTGGAATGAATTTGGTGCCC-TGCCAGCAGGGCATGACCTCATCTAGAT-CCAAGGTCTTCCTACAGAATGGGCCACTTGGTATCTCTGCTCTGCTGCAGAAGCCAGAACCACCACAGGGTCCAGGAGTTTCTGTGCTTAGTGAGGATCGTTATTACTCTTTCCATACttgaggcagagtctcatgtagctggggctgaccttcaacttgctgtgtagctgcggagggccttgaacttatgattctcctgtttctgcctcttgagtgttataggcacacatcggatgttctttatgtagttctgggagtaaagtctcagagcgttttacacagtaggcaagacctctaccagccaagcCTGGTCAGA--CCATCTCACTACTGAT-------CACACCACACTGTACATTGTT i mm10.chr11 I 329 C 0 s canFam3.chr9 39323677 711 - 61074082 AAat-aaagtggcaa-cattggaagggactttagtgtacctccatccaaatcaattattttacagatgtggaaaactga--cctgtgcggaggg--g---t-ggcgaggtgtggcagaggacagattgtgagctagaggcaaagccacggtgggattCTTGCCACCACACAGCACTGTCA-------CTGAATCTTGACAGAGTCCTGTAAAGATTC---------TCTTCCTCATGGGATAatg--ggacctcccagtttacacagccctttgattgtctttattaaatgtgcatggccac-------------------------------------tcttgatgtattcatg--------------------------caagggtta-------ttgtc---------tccattttacagataaagaatcaagggctcatggaggtgactgacttaaagctgatttgcatgtgcaatgtaattcagcacatgaatttgtaggtgtcactgccttggtct--gctgtttccactgcttggattctcactgcctGACTGCCCACACCTGCTCCCTTGGCTTCCAGACATAGTTTAA-GGGCTATCTCTTTCCACGATCATTTGCTGAATTTTTCTGTACAAGCCGGGTGCCCTTTCTATGAAGAAACCACCTGTTCTGGATCCTTGGACCCTCTGGAGGGGCAGA------GAGTCC------------------------TCACCCCACTGT-----------------------GGA----------------------------------------AGCTGGG---AGGCCCCAACTGA--GCCCAGCTAC----------------------CTTCTGTTctt-------------------------------------------------g------actc------------------------------------------------caccc-ccattctttcactcatcaagtaactcataattctgtat-ctgtc i canFam3.chr9 C 0 C 0 a score=135337.000000 s hg38.chr17_JH159146v1_alt 87606 43 + 278131 ACACCCTTCTGagaccgcaggcttcttgaaagcagagtttatg s panTro4.chr17 66208514 43 - 82630442 ACAcccctctgagaccgcaggcttcttgaaagcagagtttatg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24737812 43 - 73212453 ACAcccctctgagaccgcagccttcttgaaagcagagtttatg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47957278 43 - 81552678 ACACTGCTTTGagactgcgggcttcttgaaagcagagtttatg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53068963 43 + 80904711 ACACCCCTCTGAGACCGCAGGCTTCTTGAAAGCAGAGTTGATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52591584 43 + 80997621 ACACCCCTCTGAGACCGCAGGCTTCTTGAAAGCAGAGTTGATG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47636654 43 + 74645514 ACACCCCTCTGAGACCGCAGGCTTCTTGAAAGCAGAGTCGATG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9905030 43 - 75148670 ACACCCCTCTGAGACCGCAGGCTTCTTGAAAGCAGAGTTGATG i chlSab2.chr16 C 0 C 0 s mm10.chr11 99495301 42 + 122082543 TCACGCCCCTGAGACTGCAGCCTTTTGGGATGCAGGGTTGAG- i mm10.chr11 C 0 C 0 s canFam3.chr9 39324388 43 - 61074082 acacttctctgggactgcaggcatcttgaaaaccaggattatg i canFam3.chr9 C 0 C 0 e calJac3.chr5 112750762 864 + 159171411 I a score=1450332.000000 s hg38.chr17_JH159146v1_alt 87649 431 + 278131 tcttcca-ttt-ttgagcaccaaagtctggtt------------tcttggtggtattttgcaaatgtatgttgactcaatCATAAAC-------------TTTTTagagtcaggattttaacacaggtctcctgatgccatcaacttctgctccttttaGGACTGTGAGTTATAGAACTAGAAAGTAGGAAAACGCCTCTCCTGGGTATAGATTAACCATCCATGAAGGCCA-ATCTTTTCCAATTACAAATAAAGCCACCCAAAAGCACACCAGCTCTGCTCCTCCCAGTCTTACAACAAAACCTTATCAGGGAAGAGTCTCTGAATATTTTTTATTTCACTGTGCACGAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAGCTTGGAGAGTGCTTAGAAAGAGTG----------CCGACAGTCACTTACATCTCAGA-TATGAGAAAAAGACAAAAGAGACAAGTG s panTro4.chr17 66208557 431 - 82630442 tcttccg-ttt-ttgagcaccaaagtctggtt------------tcttggtggtattttgcaaatgtgtgttgactcaatCATAAAC-------------TTTTTagagtcaggattttaacacaggtctcctgatgccatcaacttctgctccttttaGAACTGTGAGTTATAGAACTAGAAAGTAGGAAAACGCCTCTCCTGGGTATAGATTAACCATCCACGAAGGCCA-ATCTTTTCCAATTACAAATAAAGCCACCCAAAAGCACACCAGCTCTGCTCCTCCCAGTCTTACAACAAAACCTTATCAGGGAAGAGTCTCTGAATATTTTTTATTTCACTGTGCACGAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAGCTTGGAGAGTGCTTAGAAAGAGTG----------CCGACAGTCACTTACATCTCAGA-TATGAGAAAAAGACAAAAGAGACAAGTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24737855 431 - 73212453 tcttcca-ttt-ttgagcaccaaagtctggtt------------tcttggtggtattttgcaaatgtgtgttgactcaatCATAAAC-------------TTTTTagagtcaggattttaacacaggtctcctgatgccatcaccttctgctccttttaGGACTGTGAGTTATAGAACTAGAAAGTAGGAAAACGCCTCTCCTGGGTATAGATTAACCATCCACGAAGGCCA-ATCCTTTCCAATTACAAATAAAGCCACCCAAACGCACACCAGCTCTGCTCCTCCCGGTCTTACAGCAAAACCTTATCAGGGAAGAGTCTCTGAATATTTTTTATTTCACTGTGCACAAGCTAGAAAAATGAGCCTCCAAGCCTCAGGGAAGCTTGGAGAGTGCTTAGAAAGAGTG----------CCGACAGTCACTTACATCTCAGA-TATGAGAAAACGACAAAAGAGACAAGTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47957321 431 - 81552678 tcttcca-ttt-ttgagcaccaaagtctggtt------------tcttggtggtattttgcaaatgtgtgttgactcaatCATAAAC-------------TTTTTAGAGTTAGGATTTTAACGCAGGTCTCCTGATGCCATCACCTTCTGCTCCTTTTAGGACTGTGAGTTATAGAACTAGAAAGTAGGAAAACACCTCTCCTGAGTATAGATTAACCATCCACGAAGGCCA-ATCCTTTCCAATTACAAATAAAGCCACCCAAAAGCACACCTGCTCTGCTCCTTCCGGTCTTACAACAAAACCTTATCAGGTAAGAGTCTCTGAATATTTTTTATTTCACTGTGCACGAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAGCTTGGAGAGTGCTTAGAAAGAGTG----------CCTACAGTCACTTACATCTCaga-tatgagaaaaagacaaaagagacaagtg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53069006 429 + 80904711 TCTTCCA-TTT-TTGAGCACCAAAGTCTGTCT------------TCTTGGTGGTATTTTGCAAATGTGCGTTAACTCAATCATAAAC--------------TTTTAGAGTCAGGGTTTTAACACAGGTCCCCCGGTGCCATCACCTTC-GCTCCTTTTAGGACTGTGGGTTATAAAACTAGAAAGTCGGGAAATGCCTCTCCTGGGTATGGATTAACCACCCACGAAGGCCA-ATCCTTTCCGATTGCAAATAAAGTCACCCAAAAGCGCACCAGCTTTGCCCCTCCCAGTCTTACAACAAACCCTTATCAGGGAAGAGGCTCTGAATATTTTCTATTTCACTGTGCACAAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAACTTGGGGAGTGCTTAGAAAGAGTG----------CCTGCAGTCACTTACATCTCAGA-TATGAGAAAAAGACAAAAGAGACACGTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52591627 429 + 80997621 TCTTCCA-TTT-TTGAGCACCAAAGTCTGTCT------------TCTTGGTGGTATTTTGCAAATGTGCGTTAACTCAATCATAAAC--------------TTTTAGAGTCAGGGTTTTAACACAGGTCCCCTGGTGCCATCACCTTC-GCTCCTTTTAGGACTGTGGGTTATAAAACTAGAAAGTCGGGAAACGCCTCTCCTGGGTATGGATTAACCACCCACGAAGGCCA-ATCCTTTCCGATTGCAAATAAAGTCACCCAAAAGCGCACCAGCTTTGCCCCTCCCAGTCTTACAACAAACCCTTATCAGGGAAGAGGCTCTGAATATTTTCTATTTCACTGTGCACAAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAACTTGGGGAGTGCTTAGAAAGAGTG----------CCTGCAGTCACTTACATCTCAGA-TATGAGAAAAAGACAAAAGAGACACGTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47636697 425 + 74645514 TCTTCTA-TTT-TTGAGCACCAAAGTCTGTCT------------TTTTGGTGGTATTTTGCAAATGTGCA-----TCAATCATAAAC--------------TTTTAGAGTCAGGATTTTAACACAGGTCCCCTGGTGCCATCACCTTCTGCTCCTTTTAGGACTGTGGGTTATAAAACTAGAAAGTCGGAAAACGCCTCTCCTGGGTATGGATTAACCACCCACGAAGGCCA-ATCCTTTCCAATTACAAATAAAGTCACCCAAAAGCGCACCAGCTTTGCCCCTCCCAGTCTTACAACAAACCCTTATCAGGGAAGAGgctctgaatattttttaattcactgTGCACGAGCTGGAAAAATGAGCCTCCAAGCCTCAAGGAAACTTGGGGAGTGCTTAGAAAGAGTG----------CCTACAGTCACTTACATCTCAGa-tatgagaaaaagacaaaagagacaCGTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9905073 430 - 75148670 TCTTCCA-TTT-TTGAGCACCGAAGTCTGCCT------------TCTTGGTGGCATTTTGCAAATGTGCGTTAACTCAATCATAAAC--------------TTTTAGAGTCAGGGTTTTAACACAGGTCCCCTGGTGCCATCACCTTCTGCTCCTTTTAGGACTGTGGGTTATAAAACTAGAAAGTCGGAAAACGCCTCTCCTGGGTATGGATTAACCACCCACGAAGGCCA-ATCCTTTCCAATTACAAATAAAGTCACCCAAAAGCGCACCAGCTTTTCCCCTCCCAGTCTTACAACAAACCCTTATCAGGGAAGAGGCTCTGAATATTTTTTATTTCACTGTGCACGAGCTGGAAAAATGAGCCTCCAAGCCTCAGGGAAACTTGGGGAGTGCTTAGAAAGAGTG----------CCTACAGTCACTTACATCTCaga-tatgagaaaaagagaaaagagacacgtg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112751626 419 + 159171411 TTTCCCA-GTT-TTGAGCGCCAAAGTCTGGCT------------TCTTGTACGTATTTTGTAAATGTGTATTAACTCAATCATACAC-------------TTTTTAGAGTCAGGATTGTAAGTCAGGTCCCCTGACACCATCACCTCCTGCTCCTTTTAGGACTGTTAGTTATAGAACCAGAAAGTAGGAAAATGCCTCTCCTGGGAACGGATTAGACATCCACGAAGGCCC-GTCCTTTCCAATTA----------CACCCAAAAGCACACCAGCTCTGCTCCTCCTGGCCTTACCACAAAACCTTATCAGGGAAGATTCTCTGAATAGTTTTGATTTCACTGTGGACGAGCTGGAAAAAT--GTCGCTGAACCTCAGGAAAACTTGGAGAGTGCTTACAAAGAGTG----------CCTACATTCACTTACATTTCAGA-TATGAGAAAAAGACAAAAGAGACACGTA i calJac3.chr5 I 864 C 0 s mm10.chr11 99495343 406 + 122082543 TCTTCCACCTT-CTAAGTACCACTGCTTGGTCAGAGCACTGGAATACTGAAAGCTTTTCATGAATG-GTGTTGTT----TCATAAACTCAGTATTGATGTTTTCTAGAGTTAGAATTTTAACTCGGGCCCTTCCATACCAT---------TTTCTCCTAGCCCTGTGAGGTGAATAAACTCAACTTAGGAAAA-GCCAATCC---------AATTATTGCCCA---------------TTCCAAATATAAATAAAACCATT--GAATCACACCAGACCTGCTCTTTC------TGCATCAAAAACTGATCAAAGAAT-GACCCTGGATTTTCCTTATGTCACCACCAAACTGCTGCAAAGCTATAGTTGTGA--CTGCAGAAAGTTCAGTG-GTTCTTAGAAGGGGAG----------CTTGGGACTGCTTATGTCCCCCA--ATGAGAAAAGAAGAAAAAAAGGTAGTG i mm10.chr11 C 0 I 769 s canFam3.chr9 39324431 436 - 61074082 tcttcca-tctatcaagtgccagagtctggct------------tctaataggcatttcgtaaatgtgtgttaaCTCAGTAATGAAC-------------TTTCTAGAATTAGGATTTTAACTCTGGTCCTCTGATAGCATCACCTCCTGCCCCTTTTGGGATTGTGAGTTGTAAAACCAGGTAGTAGGAAAAAGCCTCTTCCAGGTGCAAACTAGCCAGCCATAAAGGCAACCTCATTCCTAATTACAAATAAAATTACC-AAAAGCACATCAGCTCTGCTTGTCC-ACCCTGGCATCAAAACCAT----GCAAAAGTCCTCTGGAATTTCTTCATCTCACTGTGGGCAGGATGGAATGAT--TTAGTCAAGACTAAAGGAAACTTTGGGGGTGCTTAGAGGGAGTGTTTAAAGTGTTCTATGGTCACTTACACCTTTGAACATGAGAAAGAGACAAAAGGGAGACAAG i canFam3.chr9 C 0 C 0 a score=39510.000000 s hg38.chr17_JH159146v1_alt 88080 10 + 278131 ATAAAAATAG s panTro4.chr17 66208988 10 - 82630442 ATAAAAATAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24738286 10 - 73212453 ATAAAAATAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47957752 10 - 81552678 ataaaaatag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53069435 10 + 80904711 ATAAAAATAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52592056 10 + 80997621 ATAAAAATAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47637122 10 + 74645514 ATAAAAATAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9905503 10 - 75148670 ataaaaatag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112752045 10 + 159171411 ATAAAAATAG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39324867 10 - 61074082 ATAAAAAGAG i canFam3.chr9 C 0 C 0 e mm10.chr11 99495749 769 + 122082543 I a score=1571767.000000 s hg38.chr17_JH159146v1_alt 88090 431 + 278131 AGCAAATGAGGGAACTAGAGAGACTTGTT-TG-GCGAGTGGTGGCAACCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCGCCTGGACCCAGACTTACCAAGGAAGAAAACA----TTTACCTTTAGCATGTGCAAGGGCCGGGCTGCACTGCCTTTTTCTAAATTCTCTCACCAGAATCTACAATG-AAATTAATGCTTCTC--TAA-TTATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCCCATAGATTTGGCCACTGTCTCATTTTATGTCCATGTGTGGGAGTTTTGATTTATAGGACTTATCCTTGAGCAAAA-------------------GATTTCTTGTGT--CATAGCAGGACCAGGGCCAGGAAAAACTGGTGGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCTAGT s panTro4.chr17 66208998 431 - 82630442 AGCAAATGAGGGAACTAGAGAGACTTGTT-TG-GCGAGTGGTGGCAACCAGTGTTGTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCGCCTGGACCCAGACTTACCAAGGAAGAAAACA----TTTACCTTTAGCATGTGCAAGGGCCGGGCTGCACTGCCTTTCTCTAAATTCTCTCACCAGAATCTACAATG-GAATTAATGCTTCTC--TAA-TCATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCCCATAGATTTGGCCACGGTCTCATTTTATGTCCATGTGTGGGAGTTTTGATTTATAGGACTTATCCTTGAGCAAAA-------------------GATTTCTTGTAT--CATAGCAGGACCAGGGCCAGGAAAAACTGGTGGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCCAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24738296 433 - 73212453 AGCAAATGAGGGAACTAGAGAGACTTGTT-TG-GCAAGTGGTGGCAGCCAGTCTTCTG-TGGATGTGGATGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCGCCTGGACCCAGCCTTAGCAAGGAAGAAAACA----TTTACCTTTAGCATGTGCAAGGGCCGCGGTGCACTGCCTTTCTCTAAATTCTCTCAGCAGAATCTACAATG-GAATTAATCCTTCTCTATAA-TCATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCCCATAAATTTGGCCGCTGTCTCATTTTATGTCCATGTGTGGGAGTTTTGATTTATAGGAGTTATCCTTGAGCAAAA-------------------GATTTCTTGTAT--CATAGCAGGACCAGGGCCAGGAAAAACCGGTGGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CCCTTCCAGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47957762 431 - 81552678 agCAAATGAGGGAACTAGAGAGACTTGTT-TG-GCAAGTGGTGGCAACCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCACCTGGACCCAGCCTTACCAAGGTAGAAAACA----TTTACCTTTAGCATGTGCAAGGGCCAAGCTGCACTGCCTTTCTCTAAATTCTCTCACCAGAATCTACAATG-GAATTAATGCTTCTC--TAC-TCATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCCCATAAATTTGGCCGCCGTCTCATTTTATGTCCGTGTGTGGGAGTTTTGATTTGTAGGAGTTATCCTTGAGCAAAA-------------------GATTTCTTGTAT--CATAGCAGGACCAGGGCCAGGAAAAACTGGTGGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTTCAGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53069445 431 + 80904711 AGCAAATGAGGGAACTAGAGAGACTTGTT-TG-GTGAGTGGTGGCAAGCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCACCCGGACCCAGCCTTACCAAGGAAGAAAACA----TTTACCGTTAGCATGTGCAAGGGCCGGGCTGCACTGCCTTTCTCTAAATTCTCTCACCAGAATCTACAATG-GAATGAATGCTTCTC--TAC-TCATTTCAGGCATGTCTG-AGTGGCAGTGACGTATCAACCCCATAAATTTGGCCACTGTCTCATTTTATGTCCGTGTGTGGGAGTTTTGATTTATAGGAGTTATCCTTGAGCAAAA-------------------GTTTTCTTGTAT--CATAGCAGGACCAGGGTGGGGAAAAACTGGTAGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCCAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52592066 431 + 80997621 AGCAAATGAGGGAACTAGAGAGACTTGCT-TG-GTGAGTGGCGGCAAGCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCACCCGGACCCAGCCTTACCAAGGAAGAAAACA----TTTACCGTTAGCATGTGCAAGGGCCGGGCTGCACTGCCTTTCTCTAAATTCTCTCACCAGAATCTACAATG-GAATGAATGCTTCTC--TAC-TCATTTCAGGCATGTCTG-AGTGGCAGTGACGTATCAACCCCATAAATTTGGCCACTGTCTCATTTTATGTCCGTGTGTGGGAGTTTTGATTTATAGGAGTTATCCTTGAGCAAAA-------------------GTTTTCTTGTAT--CATAGCAGGACCAGGGTGGGGAAAAACTGGTAGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCCAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47637132 431 + 74645514 AGCAAACGAGGGAACTAGAGAGACTTGTT-TG-GTGAGTGGTGGCAAGCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTATGGTCAGCTCTGGTTCCTGTTCACCCGGACCCAGCCTTAccaaggaagaaaaca----tttacCGTTAGCATGTGCAAGGGCTGGGCTGCACTGCCTTTCTCTAAATTCTCTCaccagaatctacaaag-gaatGAATGCTTCTC--TAC-TCATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCTCATAAATTTGGCCACTGTCTCATTTTATGTCCGTGTGTGGGAGTTTTGATTTATAGGAGTTATCCTTGAGGAAAA-------------------GATTTCTTGTAT--CATAGCAGGACCAGGGCAGGGAAAAACTGGCAGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCCAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9905513 431 - 75148670 agcaaatgagGGAACTAGAGAGACTTGTT-TG-GTGAGTGGTGGCAAGCAGTGTTCTG-TGGATGTGGACGGTTCCTGGTCA------------TCAAAGTTACGGTCAGCTCTGGTTCCTGTTCACCTGGACCCAGCCTTACCAAGGAAGAAAACA----TTTACTGTTAGCATGTGCAAGGGCTGGGCTGCACTGCCTTTCTCTAAATTCTCTCACCAGAATCTACAATG-GAATGAATGCTTCTC--TAC-TCATTTCAGGCATGTCTG-AGTGGCAGTGACTTATCAACCCCATAAATTTGGCCACTATCTCATTTTATGTCCGTGTGTGGGAGTTTTGATTTATAGGAGTTATCCTTGAGCAAAA-------------------GTTTTCTTGTAT--CATAGCAGGACCAGGGCAGGGAAAAACTGGTGGTGAGATCTGAGAGCACTGGGGAGAAATAGT---CTCTTCCAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112752055 420 + 159171411 AACATATGAGGGAACTAGAGAGACTTGTTGGG-GCGAGTGGTGGCAAGCAGTGTTCTG-TGGATGTGGATGGTTCCCGGTCA------------TCAAGGCTGTGGTCGGCTCTGGTTCCTGTTCACCTAGACCAAGCCTTACGAAGGAAGAGAACA----TTCACCTTTAGCATGTGCAAGGCCTGGGCTGCATGCCCTTTCTCTAAATTCTCTCACAGGAATCTACAGTG----------CTTCTG--TAC-TCATTTTAGGCACGTCTG-GGTGGCAGTAACTTATGAACCCCATAAATTTAGTTCCTGTCTCATTTTATGCCTATGTGTGGGAGTTTTGTTTTATAGGGGTTAACCTCGAGCAAAA-------------------GATTTCTTGTAT--CATAATAGGACCAGGGTAGGGAAAAAC------TGAGACCTGAGAGCACTGGGGAGAAATAGTCTCCTCTTCTAAT i calJac3.chr5 C 0 C 0 s mm10.chr11 99496518 451 + 122082543 AGCGAGTGAGTAAACTACAGA-------C-TG-ATAA---GCAGGAAGTCATGTTCTGATGTACACACAAAGTTCTTCGTCACTGGCTTTTGACTCAGGCTTGTGGTAGTCTCTGGGTTCCGTTGACATAGACCCAGCCTCTGCAAGGAGGAAAAGACAACCCTGCCTCCAATGAGTACAAGGTCCAGGCTGCAC-------CCCTAAATTCTTTCACAAGGATCTG-AATG-GAACTGATCCACCCC--CAAGTCATGCCAGGGGTGTCTG-AGGAGCTGTGGCTTAAGTAGCCCGTATAGTTGACTCCTGTCTCATTTTACATCAGTATGTGTGGGGTTTGATTTATAAGAATTAACCATGAACAAAATGTTGTTTGGTTTGGTTTTGTCTTTTTGTATTGCGTAGCTGGAACAGGGT-GGGGAGACTTGATGGTGTAATTTGAGAGGCATGGCAAGAAGCAGT---GTCTTGTAGT i mm10.chr11 I 769 I 298 s canFam3.chr9 39324877 438 - 61074082 GGCAAATGAGCGAAGCATAGAGACTTGTT-TGAATGTGTGGTGGCAAGCAGTGCTCTGCTAGACATCGATGGTGTCTGATCA-TTTGTTTTGACTCAAGGTTAGGGTCAGCTCTG-----TGTTCACATGGACTCAGACTCACAAAT---GACAACA----TCCATCCATAGGTTGTGCAAGGGCCAGTCTGTGCCCTGTCTCCTGAAACACCCTCTCAATGACTGGCGATGGGAATGATCATTTCCC--TGT-GCTTTGCAGGCATGTCTGAAGTGGCAGTGACCTATTAGCCCTGTGAATTTGGCCCATGCGTCATTTTATATCAGTGTGTGGGAGTTTGGATTTATAGGAGTTAACCTCGAGCAAAA-------------------TACTTCTTGTAT--TATAGCAGCACCAGGGCAGGGAAAAATTGGTGGTGCCATCTGAGAAGACTGAAGAGAAGTCAC---TTCTTCTAGA i canFam3.chr9 C 0 C 0 a score=74344.000000 s hg38.chr17_JH159146v1_alt 88521 21 + 278131 ACTGTTATATGATGGTTTCCC s panTro4.chr17 66209429 21 - 82630442 ACTGTTATATGATGGTTTCCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24738729 21 - 73212453 ACTGTTATATGATGGTTTCCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47958193 21 - 81552678 ACTGTTATATGATGGTTTCCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53069876 21 + 80904711 ACTGTTATATGATGGTTTCCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52592497 21 + 80997621 ACTGTTATATGATGGTTTCCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47637563 21 + 74645514 ACTGTTATATGATGGTTtccc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9905944 21 - 75148670 ACTGTTATATGATGGTTTCCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112752475 21 + 159171411 ACTGTTATCTGAGGAGTTCCC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39325315 21 - 61074082 ACTATTATGCAAAGATTTTCC i canFam3.chr9 C 0 C 0 e mm10.chr11 99496969 298 + 122082543 I a score=2457.000000 s hg38.chr17_JH159146v1_alt 88542 8 + 278131 ATAAC-----ttc s panTro4.chr17 66209450 8 - 82630442 ATAAC-----ttc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24738750 13 - 73212453 ATAACTGtttttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47958214 8 - 81552678 ATAAT-----TTC i nomLeu3.chr19 C 0 I 799 s rheMac3.chr16 53069897 7 + 80904711 ATAAC-----tt- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52592518 7 + 80997621 ATAAC-----tt- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47637584 9 + 74645514 ataac---tttt- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9905965 11 - 75148670 ATAAC-tttttt- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112752496 8 + 159171411 ATAAA-----ttc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39325336 0 - 61074082 C e mm10.chr11 99496969 298 + 122082543 I a score=854014.000000 s hg38.chr17_JH159146v1_alt 88550 299 + 278131 ---tttttttttttttctcaagatggagttttgctctgtcacccaggctggagtgcaatggcgcaatcttgactcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctaggattacaggtgcgcaccaccatgcccagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcatgatctgcctgccttggcctcccaaagtgctgggattacaggcatgagccaccctgcccagccAA s panTro4.chr17 66209458 298 - 82630442 ----ttttttttttttctcaagatggagttttgctctgtcacccaggctggagtgcaatggcgcaatcttgactcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctaggattacaggtgcgcaccaccatgcccagctaattttttgtatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcatgatctgcctgccttggcctcccaaagtgctgggattacaggcatgagccaccctgcccagccAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24738763 299 - 73212453 ---tttttttttttttctcaagatggagtcttgctctgtcacccaggctggagtgcaatggcgcaatcttgactcactgcaacctccacctcctgggttcaagcgattctcttgcctcagcctcccgagtagctaggattacaggtgcgcaccaccatgcctggctaagtttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgatctcatgatctgcctgccttggcctcccaaaatgctgggattacaggcatgagccaacctgcccagccGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47959021 298 - 81552678 ---tttttttttttttctcaaaatggagtcttgctctgtcacccaggctggagtgcgatggcacagtcttgactcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctctcgagtagctagg-ttacaggggcgcaccaccatgcccagctaattttttgtattcttagtagagacaggatttcgccatgttggccaggctggtcttgaactcctgacctcatgatctgcctgcctcggcctctgaaagtgctgggattacaggcatgagccaccgtgcccagccAA i nomLeu3.chr19 I 799 C 0 s rheMac3.chr16 53069904 299 + 80904711 ---tttttttttttttctcgagatgtagtcttgctttgttacccaggctggagtgcaatggcacaatcttggctcactgcaatctccaactgctgggttcaagcgattcttctgcctcggcctcccgagtagctaggattacaggtgtgcaccaacatgcccagttcattttttgtgtttttagtagagatgaggtttcaccatgttagccaggctggtctcgaactcttgacctcatgatctgcccatctcggcctcccaaagtgctgtgattacaggcatgagccaccgtgcctagcTGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52592525 299 + 80997621 ---tttttttttttttctcgagatgtagtcttgctttgttacccaggctggagtgcaatggcacaatcttggctcactgcaatctccaactgctgggttcaagcgattcttctgcctcggcctcccgagtagctaggattacaggtgtgcaccaacatgcccagttcattttttgtgtttttagtagagatgaggtttcaccatgttagccaggctggtctcgaactcttgacctcatgatctgcccatctcggcctcccaaagtgctgtgattacaggcatgagccaccgtgcctagcTGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47637593 297 + 74645514 ---tttttttttttttctcgagatgtagtcttgctttgttacccaggctggagtgcaatggcacaatcttggctcactgcaatctccaactgctgggttcaagcaattcttctgcctcggcctcccgagtagctaggattacaggtgtgcaccaacatgcccagctcattttttgtgtttttagtagagatggggtttcaccatgttagccaggctggtctcgaactc--gacctcatgatctgcccatctcggcctcccaaagtgctgtgattacaggcatgagccaccgtgcctagccga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9905976 299 - 75148670 ---tttttttttttttctcgagatgtagtcttgctttgttacccaggctggagtgcaatggcacaatcttggctcactgcaatctccaactgctgggttctagcgattcttctgcctcggcctcccgagtagctaggattacaggtgtgcaccaacatgcccagctcattttttgtgcttttagtagagatggggtttcaccatgttagccaggctggtctcgaactcttgacctcatgatctgcccatctcggcctcccaaagtgctgtgattacaggcatgagccaccgtgcctagccGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112752504 301 + 159171411 tttccttttttttccccttgagatggagtctagatctgttgcccaggctggagtgcagtggtgcgatctcggctcattgcaacctctgcctcctgggttcaagtgattctcctgccttagcctcctgagtagctgggattataggcatgtaccaccatgcctggctaattttttgtatttttagtagagacggggtttcactgtgttggccaggctggtcttgaatgcttgacctcgtgatctgcccacctcagcctttt-acgtgctgggattacaggtgtgagccactatgcctggccAA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39325336 0 - 61074082 C e mm10.chr11 99496969 298 + 122082543 I a score=696661.000000 s hg38.chr17_JH159146v1_alt 88849 313 + 278131 TTTTCCATAACttc-------------------ttttttttttttttgagacagagtctcgccctgtcgcccaggctggagtgcagtgatgtgatcgtggctcactgcaacctccacctcccgggttcaagcgattcttctgcctcagcctcccgagtagccgggaccacaggtgcgtgccaccacgcccggctaatctttgtagtttttagtagagacggggttttaccatgttggccaggcagatcttgaacttctgactttgtgatccacccacctcggcctcccaaagtgctgggattataggcatgagccaccgcacccggccCTGG s panTro4.chr17 66209756 313 - 82630442 TTTTCCATAACttc-------------------ttttttttttttttgagacagagtctcgccctgtcgcccaggctggagtgcagtgatgcgatcgtggctcactgcaacctccacctcccgggttcaagcgattcttctgcctcggcctcccgagtagccgggaccacaggtacgtgccaccacgcccggctaatctttgtagtttttagtagagacggggttttaccatgttggccaggctgatttttaacttctgacttcgtgatccacccaccttggcctcccaaagtgctggaattataggcgtgagccaccgcacccggccCCGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24739062 310 - 73212453 TTTTCCGTAACttc----------------------tttttttttttgagacagagtctcgccctgtcgcccaggctggagtgcagtgatgcgatcatggctcactgcaacctccacctcccgggttcaagcgattcttctgcctcagcctcccgagtagccgggaccacaggcgctcaccaccacgcccggctaatctttgtagtttttagtagagacggagttttaccatgttggccaggctgatcttgaacttctgacttcgtgatccacccacgtcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccggccCCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47959319 320 - 81552678 TTTTCCATAACTTCTGtt------------tttttttttttttttttgagaccgcgtctcgccctgtcacccaggctggagtgcagtgatgcgatcacgactcactgcaacctccacctcccgggttcaagcgattcttcggcctcagcctccggagtagctgggaccacaggcgcgtgccaccacgcttggctaatctttgtagtttttagtagagacggggttttaccatgttggccaggctgatcttgaacttctggcttcgtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgcacccagccCCGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53070203 320 + 80904711 TTATCCATAACTACTACttc----------ttcttctttttttttttgagacggagtctcgccctgtggcccaggctggaatgcagtgacacgatcccggctcactgcaagctccacctcccgggttcaaacaattcttctgcctcagcctcccgagtagctgggaccatagg-gtgtgccaccacgcccaactaatttctgtagtttttagtagagacggagttttaccatgttggccaggctgatcttgaacttctgaccttgttatccacccgcctcggcctccgaaagtgctgggattata-gcgtgagccactgcacccagccCTGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52592824 321 + 80997621 TTATCCATAACTACTACttc----------ttcttctttttttttttgagacggagtctcgccctgtggcccaggctggaatgcagtgacacgatcccggctcactgcaagctccaccttccgggttcaaacaattcttctgcctcagcctcccgagtagctgggaccatagg-gtgtgccaccacgcccaactaatttctgtagtttttagtagagacggagttttaccatgttggccaggctgatcttgaacttctgaccttgttatccacccgcctcggcctccgaaagtgctgggattataggcgtgagccactgcacccagccCTGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47637890 315 + 74645514 TTATccataacttc-----------------ttttttttttttttttgagacggagtctcgcccggtggcccaggctggattgcagtgacacgatcccggctcactgcaagctccacctcccaggttcaaacaattcttctgcctcagcctcctgagtagctgggaccatagacgtgtgccaccatgcccaactaatttctgtagtttttagtagagacagagttttaccatgttggccaggctgatcttgaacttctgaccttgttatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgcacccagccctga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9906275 332 - 75148670 TTATCCATAACTTCTTCttcttcttctttttttttttttttttttttgagacggagtctcgccctgtggcccaggctggaatgcagtgacacgatcctggctcactgcaagctccacctcccgggttcaaacaattcttctgcctcagcctcccgagtagctgggaccataggcatgtgccaccacgcccaactaatttccgtagtttttagtagagacggagttttaccatgttggccaggctgatcttgaacttccgaccttgttatccacccgcctcagcctctgaaagtgctgggattacaggtgtgaaccactgcacccagccCTGA i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39325336 0 - 61074082 C e mm10.chr11 99496969 298 + 122082543 I e calJac3.chr5 112752805 0 + 159171411 C a score=13104.000000 s hg38.chr17_JH159146v1_alt 89162 4 + 278131 TTTT s panTro4.chr17 66210069 4 - 82630442 TTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24739372 4 - 73212453 TTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47959639 4 - 81552678 TTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53070523 4 + 80904711 TTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52593145 4 + 80997621 TTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47638205 4 + 74645514 ttTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9906607 4 - 75148670 TTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112752805 4 + 159171411 TTTT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39325336 0 - 61074082 C e mm10.chr11 99496969 298 + 122082543 I a score=187672.000000 s hg38.chr17_JH159146v1_alt 89166 55 + 278131 CCATAACTTCTAATGTGTAGAGTTCCATTGGA-TTTTAAAAGAAATGATGCTTTTT s panTro4.chr17 66210073 52 - 82630442 CCATAACTTCTAATGTGTAGAGTTCCATTGGA-ttttaaaagaaatgatgctt--- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24739376 55 - 73212453 CCATAACTTCTAATGTGTAGAGTTCCATTGGA-TTTTAAAAGAAATGATGCTTTTT i ponAbe2.chr17 C 0 I 8 s nomLeu3.chr19 47959643 55 - 81552678 CCATAACTTCTAATGTTTAGAGTTCCATTGGA-ttttaaaagaaatcatgcttttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53070527 56 + 80904711 CCATAACTTCTGATGTGTAGAGTTCCATTGGAtttttaaaagaaatgatgcttttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52593149 56 + 80997621 CCATAACTTCTGATGTGTAGAGTTCCATTGGAtttttaaaagaaatgatgcttttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47638209 56 + 74645514 CCATAACTTCTAATGTGTAGAGTTccattggatttttaaaagaaatgatgcTTTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9906611 56 - 75148670 CCATAACTTCTGATGTGTAGAGTTCCATTGGAtttttaaaagaaatgatgcttttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112752809 55 + 159171411 CCATAACTTCTAATATGTAGAGTTCCACTGGA-TTTTAAAAGAAATAATGCCTTTT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39325336 55 - 61074082 TCGTAGCTCCCAATCTGTAGAGCTCCATTGGA-TTATAAAAGGAATGGTGGATTTT i canFam3.chr9 C 0 C 0 e mm10.chr11 99496969 298 + 122082543 I a score=1911.000000 s hg38.chr17_JH159146v1_alt 89221 1 + 278131 T s rheMac3.chr16 53070583 1 + 80904711 t i rheMac3.chr16 C 0 I 7 s macFas5.chr16 52593205 1 + 80997621 t i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47638265 1 + 74645514 T i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9906667 1 - 75148670 t i chlSab2.chr16 C 0 I 7 s calJac3.chr5 112752864 1 + 159171411 T i calJac3.chr5 C 0 C 0 s canFam3.chr9 39325391 1 - 61074082 T i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24739431 8 - 73212453 I e mm10.chr11 99496969 298 + 122082543 I e nomLeu3.chr19 47959698 0 - 81552678 C e panTro4.chr17 66210125 0 - 82630442 C a score=-15873.000000 s hg38.chr17_JH159146v1_alt 89222 28 + 278131 AAAAGCATCATTTTA-----AAAGCATTAAAag s panTro4.chr17 66210125 18 - 82630442 ----------tttaa-----aaagcattaaaag i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47959698 8 - 81552678 ----------------------tggggtaa--- i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52593206 7 + 80997621 -----------------------ggggtaa--- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47638266 7 + 74645514 -----------------------GGGGTAA--- i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112752865 7 + 159171411 -----------------------GGGATAa--- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39325392 25 - 61074082 ----GTTTCTTTTTGTTGGTTGGTTGGTA---- i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24739431 8 - 73212453 I e mm10.chr11 99496969 298 + 122082543 I e chlSab2.chr16 9906668 7 - 75148670 I e rheMac3.chr16 53070584 7 + 80904711 I a score=926682.000000 s hg38.chr17_JH159146v1_alt 89250 279 + 278131 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgatggtacaggaaaaaatatttaaaaattctac--cacacacacacaacgtttggtgacatttggtgaacatcctttcagatactat----gtgtatgtattggaagacaaaagaatggctagaataa--ttggaaaaatgggctcctgcgacttattccattttagaaaaacttaagtcaattaacacattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGACATAGTTTTTCTAG s panTro4.chr17 66210143 279 - 82630442 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgatagtacaggaaaaaatatttaaaaattctac--cacacacacacaacgtttggtgacatttggtgaacatcctttcagatactat----atgtatgcattggaagacaaaagaatggctagaataa--ttggaaaaatgggctcctgcgacttattccattttagaaaaacttaagtcaattaacacattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGACATAGTTTTTCTAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24739439 280 - 73212453 aaatgatacatgcttattatacaaaaa----tcaagtgatacatgatagtacaggaaaaaatatttaaaaattctac--cacacacacacaacatttggtgacatttggtgaacatcctttcagatactat----gtgtatgcattggaagacaaaagaatggctagaataa--ttggaaaaatggactcatacgacttattccattttagaaaaacttaagtcaattaacacattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGATATAGTTTTTCTAG i ponAbe2.chr17 I 8 C 0 s nomLeu3.chr19 47959706 276 - 81552678 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgatagtacaggaaaaaatatttaaaaattccac--cacacacacgcaacctttggtaacatttggtgaac--ccttttagatactat----gtgtatgcatTGGAAGACAAAA-AATGGCTAAAATAA--TTGGAAAAATGGGCTCGTACGACTTATTCCATTTTAGAAAAACTTAAGTCAATTAACACATTTTAATCGGCAAATAAGGAACTAGAATGAATTCACTTTAGTGACATAGTTTTTCTAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53070591 281 + 80904711 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgatagtacaggaaaatatattttaaaattctaccacacacacacacaacctttggtgacatttggtgaatgtcctttcagatactct----gtgtatgcattggaagacgaaagaatggctagaataa--ttggaaaaatgggctcacatgacttactccattttagaaaagcttaagtccattgacaaattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGACATAGTTTTTCTAG i rheMac3.chr16 I 7 C 0 s macFas5.chr16 52593213 281 + 80997621 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgatagtacaggaaaaaatattttaaaattctaccacacacacacacaacctttggtgacatttggtgaatgtcctttcagatactct----gtgtatgcattggaagacgaaagaatggctagaataa--ttggaaaaatgggctcacatgacttactccattttagaaaagcttaagtccattgacaaattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGACATAGTTTTTCTAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47638273 279 + 74645514 AAATGATACATGCTTATTATAC-AAAA----TCAAGTGATACATGAtaatacaggaaaaaatattttaaaattctac--cacacacacacaacctttgGTGACATTTGGTGAACATCCTTTCAGATACTCT----GTGTATGCATTGGAAGACGAACGAATGGCTAGAATAA--TTGGAAAAATGGGCTCATATGACTTACTCCATTGTAGAAAAGCTTAAGTCAATTGACAaattttaattggcaaataagGAACTAAAATGAATTCACTTTAGTGACATAGTTTTTCTAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9906675 279 - 75148670 aaatgatacatgcttattatac-aaaa----tcaagtgatacatgataatacaggaaaaaatattttaaaattctac--cacacacacacaacctttggtgacatttggtgaacgtcctttcagatactct----gtgtatgcattggaagacgaaagaatggctagaataa--ttggaaaaatgggctcatatgacttactccattttggaaaagcttaagtcaattgacaaattttaattggcaaataaggaactaaaatgaaTTCACTTTAGTGACATAGTTTTTCTAG i chlSab2.chr16 I 7 C 0 s calJac3.chr5 112752872 278 + 159171411 aaatgatacatgtttattatac-aaaa----tcaagtgatacatgatagtacaagaaaaaagatttacaaattctgc--cacacatacacaacctctggtgatatttggtg-acatccttttagatactat----gtgtatgcattggaagacgaaagaatggctagaataa--ttgcaaaaatgggctcatacgacttattccattttagaaaaccttaagtcaattaaaacattttaattggcaaataagaaacaaaagtgaaTTCACTTTAGTGACATAGTTTTTATAG i calJac3.chr5 C 0 I 3243 s canFam3.chr9 39325417 272 - 61074082 AAATTATCCATGCTTATTATAA-AAAAATACTCAAATAATATATGAAAGTATAAGAAAA--------AAGattctat----cacacagacagccattggtaaa--tcggtgaacattgtttcagacactctctacctgtatatattggtaggcatatggatgactagaatagttttagaaaaatgagcttatacagtttattctagtttagaagaattgattttta-----aaaatttggttgataaataagaagctgaaatgaCTTCACTTTAGTTACATGTTTTGTATAG i canFam3.chr9 C 0 C 0 e mm10.chr11 99496969 298 + 122082543 I a score=4600.000000 s hg38.chr17_JH159146v1_alt 89529 2 + 278131 AA s panTro4.chr17 66210422 2 - 82630442 AA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24739719 2 - 73212453 AA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47959982 2 - 81552678 AA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53070872 2 + 80904711 AA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52593494 2 + 80997621 AA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47638552 2 + 74645514 AG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9906954 2 - 75148670 AA i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39325689 2 - 61074082 GA i canFam3.chr9 C 0 C 0 e mm10.chr11 99496969 298 + 122082543 I e calJac3.chr5 112753150 3243 + 159171411 I a score=666894.000000 s hg38.chr17_JH159146v1_alt 89531 206 + 278131 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGATAAA-ATGGCCTGTAAATGCCAGGATTTTTGGAATCGCAGGACTGG--AAAGAAAAGCAACGCTGAGCCACTTGTTGCAGATTTTTGCTTTTAGGGAGGACAACGGCAGAGTGCTGAGCTTGTTTTTGAAG-----------------TATTCTTAAAGAACGCGAGGGATGAAGCC s panTro4.chr17 66210424 206 - 82630442 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGATAAA-ATGGCCTGTAAATGCCAGGATTTTTGGAATCGCAGGACTGG--AAAGAAAAGCAACGCTGAGCCACTTGTTGCAGATTTTTGCTTTTAGGGAGGACAACGGCAGAGTGCTGAGCTTGTTTTTGAAG-----------------TATTCTTAAAGAACGCGAGGGATGAAGCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24739721 206 - 73212453 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGGTAAA-ATGGCCTGTAAATGCCAGTATTTGTGGAATCACAGGACTGG--AAAGAAAAGCAACACTGAGCCACTTGTTGCAGATTTTTGCTTTTAGGGAGAACAACAGCAGAGTGCTGAGCTTGTTTTTGAAG-----------------TATTCTTAAAGAACGCAAGGGATGAAGCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47959984 194 - 81552678 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGGTAAA-ATGGCCTGTAAATGCCAGTATTTGTGGAATCACAGG--------------AGCAACACTGAGATACTTGTTGGAGATTTTTGCTTTTAGGGAGGACAACGGCAGAGTGCTGAGCTTGTTTTTGAAG-----------------TATTCTTAAAGAACTCGAGGGGTGAAGCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53070874 206 + 80904711 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGGTAAA-ATGTCCTGTAAATGCCAGTATTTGTGGAATCGCAGGACTGG--AAAGAAGAGCAACACTGAGCCACTGGTTGCGGATTTTTGCTCTTAGGGAGGACAACGGCAGAGTGCTGAGGTTGTTTTTGAAC-----------------TATTCTTAAAGAACTCGAGGGATGGAGCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52593496 206 + 80997621 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGGTAAA-ATGTCCTGTAAATGCCAGTATTTGTGGAATCGCAGGACTGG--AAAGAAGAGCAACACTGAGCCACTGGTTGCGGATTTTTGCTCTTAGGGAGGACAACGGCAGAGTGCTGAGGTTGTTTTTGAAc-----------------tattcttaaagaactcgagggatggagcc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47638554 206 + 74645514 TTTAAAAACGTTCAtcacattcttttaaattttacatttttaagaagggTAAA-ATGTCCTGTAAATGCCAGTATTTGTGGAATCGCAGTACTGG--AAAGAAGAGCAACACTGAGCCACTGGTTGCAGATTTTTGCTCTTCGGGAGGACAACGGCAGAGTGCTGAGCTTGTTTTTGAAC-----------------TATTCTTAAAGAACTCGAGGGATGGAGCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9906956 206 - 75148670 TTTAAAAACGTTCATCACATTCTTTTAAATTTTACATTTTTAAGAAGGGTACA-ATGTCCTGTAAATGCCAGTATTTGTGGAATCACAGGACTGG--AAAGAAGAGCAACACTGAGCCACTGGTTGCAGATTTTTGCTCTTAGGGAGGACAAGGGCAGAGTGCTGAGGTTGTGTTTGAAc-----------------tgttcttaaagaactcgagggatggagcc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112756393 205 + 159171411 TTTAAAAACTTTTATCACGTTCTTTTAAATGTTACATTTTTAAGAAGGGTAAA-ATGTTCTGTAAATGCCAGTATTTGTGGAATCACAGGGCTGGTTAAAGAAGTGCAATACTGAGCTGCTTGT---AGATTTTTGCTTTTAGGGAGGACAACGGCAGAGGGCTGAGCTTGTTTTTGAAc-----------------tattcttaaagagctcaagggatgaaggc i calJac3.chr5 I 3243 C 0 s canFam3.chr9 39325691 216 - 61074082 CTTTTCAACTTTAATCACATTCTTTTAATTTTATACTTTTTAAGGAGAAAAAACATGACCTgta--------catttgtggaatcacagagctgg--aaagaagggcaagaacaggtcatttgttgcagctttctgcttctaggtaggtcaaCTACAAATTGTTGAGCTTATTTTTAAGCtttttttttttttttttttttttttAAGAACTCAAGGGATAAAGGC i canFam3.chr9 C 0 C 0 e mm10.chr11 99496969 298 + 122082543 I a score=703914.000000 s hg38.chr17_JH159146v1_alt 89737 228 + 278131 TCCAACTGCTTCCTCAGTAAATGGCCAACATTTACTGATCCT-TTTGGTTCACAAGCATTTCACTTGCAATATGGTTTCAGGATTTCTTTTGGTATTTCTGTAGAGTGCAAATTGTTCAGAATCAAAATCA-TTCTGCTTTGCATGATTTTCTGGCTGAAACATTTGTAGTTTTCACATTTGATTCATCTTTCTGATGAACTCAGTTGTCGTCT-TGAAAGGGAGTGGGTA s panTro4.chr17 66210630 228 - 82630442 TCCAACTGCTTCCTCAGTAAATGGCCAACATTTACTGATCCT-TTTGGTTCACAAGCATTTCACTTGCAATATGGTTTCAGGATTTCTTTTGGTATTTCCGTAGAGTGCAAATTGTTCAGAATCAAAATCA-TTCTGCTTTGCATGATTTTCTGGCTGAAACATTTGTAGTTTTCACATTTGATTCATCTTTCTGATGAACTCAGTTGTTGTCT-TGAAAGGGAGTGGGTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24739927 225 - 73212453 TCCAACTGCTTCCTCAGTAAATGGCCAACATTTACTGATCCT-TTTGGTTCATAAGCATTTCACTTGCAATATGGTTTCATGATTTCTTTTGGTATTTCTGTAGAGTGCAAATTGTTCAGAATCAAAATCA-TTCTCCTTTGCAAGATTTTCTGGCTGAAACATTTGTAGTTTTCACATTTGATTCATCTTTCTGATGAACTCAGTT---GTCT-TGAAAGGGAGTGGGTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47960178 229 - 81552678 TCCAACTGCTTCCTCAGTAAATGGCCAACATTTACTGATCTT-TTTGGTTCATAAGCATTTCACTTGCAATATGGTTTCATGATTTCTTTTGGTATTTCTGTAGAGTGCAAATTGTTCAGAATCAAAATCATTTCTCCTTTGCACGATTTTCTGGCTGAAACATTTGTAGTTTTCACATTTGATTCATGTTTCTGATGAACTCAGTTGTCGTCT-TGAAAGGGAGTGGGTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53071080 226 + 80904711 TCCAACTGCTTGCTCAGTAAATGGCCAACGTCTGCTGATCCT-TTTGGTTCGTAAGCATTTCACTTGCAATA-GGTTTCATGATTTCTTTTGGT-TTTCTGTAGCGTTC-AATTGTTCAGAATCAAAATCA-TTCTCCTTTGCATAATTTTCTGGCTGAACCATTTGTAGTTTTCACGTTTGATTCATCTTTCTGGTGAACGGCATTGTGGTCTCTGAAAGGGAGTGGGTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52593702 226 + 80997621 tccaactgcttcctcagtaAATGGCCAACGTCTGCTGATCCT-TTTGGTTCGTAAGCATTTCACTTGCAATA-GGTTTCATGATTTCTTTTGGT-TTTCTGTAGCGTTC-AATTGTTCAGAATCAAAATCA-TTCTCCTTTGCATAATTTTCTGGCTGAACCATTTGTAGTTTTCACGTTTGATTCATCTTTCTGGTGAACGGCATTGTGGTCTCTGAAAGGGAGTGGGTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47638760 226 + 74645514 TCCAACTGCTTCCTCAGTAAATGGCCAACGTCTGCTGATCCT-TTTGGTTCATAAGCATTTCGCTTGCAATA-ggtttcataatttcttttggt-tttctgtagCGTTC-AATTGTTCAGAATCAAAATCA-TTCTCCTTTGCATAATTTTCTGGCTGAACCATTTGTAGTTTTCACGTTTGATTCATCTTTCTGGTGAACGGCATTGTGGTCTCTGAAAGGGAGTGGGTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9907162 225 - 75148670 tccaactgcttcctcagtaAATGGCCAACGTCTGCTGATCCT-TTTGGTTCATAAGCATTTCACTTGCAATA-GGTTTCATGATTTCTTTTGGT-TTTCTGTAGCGTTC-AGTTGTTCAGAATCAAAATCA-TTCTCCTTTGCATAATTTTCTGGCTGAACCATTTGTAGTCTTCACGTTTGATTCATCTTTCTGGTG-ACAGCATTGTGGTCTCTGAAAGGGAGTGGGTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112756598 215 + 159171411 tccaaattcttcctcagtagATGGCCAGCCTTTACTCCACTT-TTTGGTTCATAAGCATTTTACCTGC--------------TTTCTTTTTGGTGTTTCTGTAGAGTTCAAATTGTTCAGATTCAAAATCA-TTCTCCTTTGCCTAACTTTCTGGCTGAAACGTTTGTAGTTTTCACATTTGATTCATGTTTCTGATGAACTGAGATGTTGTCATTGAAAGGGAGTGGGTA i calJac3.chr5 C 0 I 5918 s mm10.chr11 99497267 202 + 122082543 TCCTCCTGCTTTTCCATTAGGTGTCCAAGATTTTGTCATTTTGTTCAGGGGACAAAC-CTGCACCTGTAATATGGTCTCAAGAT-----------TTTCCATGTAGTTCCAGCTGTCCGTGACTGTCATCA-TCC--CTCTGAGTGACAT--TAGCTAA------TCTTATTTCCATACTTGTTTCATCTGAGGGGTTGA------TACTGTCATGAGAAGGAACCAAGTG i mm10.chr11 I 298 C 0 s canFam3.chr9 39325907 221 - 61074082 -TCAATTGCCTTCTTAATAGATGCCCAACATTTACTCATCTT-TTTGGTCAATGAGCATTTCACCTATGATCTGATTTCATGAATTTTTTTGTA-TCTTTATGGAGTTCAAATTGTT-----TCTAAATTA-TTCTTCTTTGCATAACTTTACAGCTAGAAGTTTCATAATTTTCACATTTGGTTCATCTTTCTGATAAATTGAGATGTAGTCG-CTAAAGGGGATGAGTA i canFam3.chr9 C 0 C 0 a score=1170812.000000 s hg38.chr17_JH159146v1_alt 89965 334 + 278131 CTTTGTAAGACAGCTCAGCTGTTGAGTGAATGCATGGGGTTGCATGTGGGTGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATGAACTGGGTACACCGTCTGT-TTGTGTGCCTTTTCAAGACAACCATTCCATTAATGAAGCATTTTATAGGCACCCGT-TCTTTATAGT-AGAGAAAGATGGCCAAAATGACTCTCAAATACATTTTTACTACACATGATATTTCAGCACAGATGAGTAGTAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTGGAAGGTTACataagaagattagacatttatagaaataaaac s panTro4.chr17 66210858 334 - 82630442 CTTTGTAAGAGAGCTCAGCTGTTGAGTGAATGCATGGGGTTGCATGTGGGTGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATGAACTGGGTACACCGTCTGT-TTGTGTGCCTTTTCAAGACAACCATTCCATTAATGAAGCATTTTATAGGCACCCGT-TCTTTATAGT-AGAGAAAGATGGCCAAAATGACTCTCAAATACATTTTTACTACACATGATATTTCAGAACAGATGAGTAGTAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTGGAAGGTTACataagaagattagacatttatagaaataaaac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24740152 334 - 73212453 CTTTGTAAGAGAGCTCAGCTGGTGAGTGAATGCATGGGGTTGCATGTGGGTGTGTT-GGGGTCAGAAGGGAGCCCTGTTAGAAGGTAGTTGTCATGAACTGGGTACACAGTCTGT-TTGTGTGCCTTTTCAAGACAACCATTCCATTAATGCAGCATTTTATAGGCACCCGT-TCTTTATAGT-AGAGAAAGATGGCCAAAATGACTCTCGAATACATTTTTACTGCACACGACATTTCAGAACAGATGAGTAGTAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTGGAAGGTTACataagaagattagacatttatagaaataaaac i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47960407 334 - 81552678 CTTTGTAAGAGAGCTCAGCTGGTGAGTGAGTGCATGGGGTTGCATGTGGGTGTGTT-GAGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATGAACTGGGTACACAGTCTGT-TTGTGTGCCTTTTCAAGACAATGATTCCATTAATGAAGCATTTTATAGGCACCCGT-TCTTTATAGT-AGAGAAAGATGGCCAAAATGACTCTCGAATACATTTTTACTACACATGACATTTCAGAACAGTTGAGTAGTAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATAAGTTGGAAGGTTACataagaagattagacatttatagaaataaaac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53071306 328 + 80904711 TTTTGTAAG--AGCTCAGCTGGTGAATGAATGCGTGGAGTTGCATGCAAATGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATTAACTGGGTACA----CTGT-TTGTGAGCCTTTTCAAGACAACCATTTCATCAGCGAAGCATTTTATAGGCACCCGA-TCTTTACAGT-AGAGAAGAATGGCCAAAATGACTCTCGAATACATTTTTACTACACATGACATTTCAGAACAGATGAGTAGCAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTAGAAGGTTACataagaaggttagacatttatagaaataaaac i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52593928 328 + 80997621 TTTTGTAAG--AGCTCAGCTGGTGAATGAATGCGTGGAGTTGCATGCAAATGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATTAACTGGGTACA----CTGT-TTGTGAGCCTTTTCAAGACAACCATTTCATCAGCGAAGCATTTTATAGGCACCCGA-TCTTTACAGT-AGAGAAGAATGGCCAAAATGACTCTCGAATACATTTTTACTACACATGACATTTCAGAACAGATGAGTAGCAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTAGAAGGTTACataagaaggttagacatttatagaaataaaac i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47638986 328 + 74645514 TTTTGTAAG--AGCTCAGCTGGTGAATGAATGCGTGGAGTTGCATGCAAATGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATTAACTGGGTACA----GTGT-TTGTGAACCTTTTCAAGACAACCATTTCATCAGCGAAGCATTTTATAGGCACCCAA-TCTTTACAGT-AGAGAAGAATGGCCAAAATGACTCTCGAATACATTTTTACTACACATGACATTTCAGAACAGATGAGTAGCAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTGGAAGGTTACATAAGAAGGTTAgacatttatagaaataaaac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9907387 332 - 75148670 TTTTATAAG--AGCTCAGCTGGTGAGTGAATGCGTGGAGTTGCATGCAAGTGTGTT-GGGGTCAGAAGGGAGCCCTGTCAGAAGGTAGCTGTCATTAACTGGGTACACAGTCTGT-TTGTGAGCCTTTTCAAGACAACCATTTCATCAGCGAAGCATTTTATAGGCACCCGA-TCTTTACAGT-AGAGAAGAATGGCCAAAATGACTCTCGAATACATTTTTACTACACCTGACATTTCAGAACAGATGAGTAGCAGGTCTTCAGGCAAAATTGCTATGCTATTATCCTATGAGTTGGAAGGTTACataagaaggttagacatttatagaaataaaac i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112762731 333 + 159171411 GTTTGTGAGCAAACTCAGCTGGTGCGTGAATG-ATGGGGTTGCATGCATGTGTGCT-GGGGTTGGAAGAGAGCCCTATCAGCGGGTAGGTGTCATGAACCAGGTGCACAGTCTGT-TTGTGTGCCTTTTAAAGACAACCATTCCATCAGCAAAGCATTATATAGGCATTTGC-TCTTTATAGT-AGAGAAGAGTGGCCAAAATGACTCCCAAGTGTGTTTTTACTACACATGATATTTCAGAACAGATGAGTAGTAGGTCTTCAGGCAAAATTGCTATGCTATTATCTTATGATTTGGAAGGTTACataagaagattagacatttatagaaataaaat i calJac3.chr5 I 5918 C 0 s mm10.chr11 99497469 291 + 122082543 TTTCATTGGAGAGGCTGGGTGCTGAGGGGTTG---GAGGTTGCATGTGAGCAT-------CTCAGAAG---------CCAGCAGGAAGCAGCCAT-AACCCAGAGCA----CCGT-TTGTG--CCTTTGAAAGACCACCATCCCACCGAAGAAGCTCTTCA-GGGCACCCTTCTCCTTTTAGT-GGCT--GAATGGCTATAATGATCACCAAACATATTTTTGCTAAGTATGGCATTTCTATACAGATGA----CAGACCTCTGGACAAAATCCCTATGCCATTATCC-AGGGGTTGGAAGG-----------GCTAAAACATGTACAGAAGTAAAAC i mm10.chr11 C 0 I 1436 s canFam3.chr9 39326128 327 - 61074082 TTTTGCAGGAGACCTTGCACAATGAGTGAATAAAGGGGTTTGCATGTGGGTGCATCAGGGATCAGAAGAGAGCCCTGGTGGCCATTGACTGTCATTTACTGGGAGTA----CAGTGTTGTATGCCTTTTAAAGACAATCATTCCATCACTGAGACATTCCCTAGGCACCCTTTTCTTTAGAGTGAGAAAAGAACGGCTAGAGCAATCCCCAAATAGATTTTTACTCTGCATGATATTTCAGAACAGATGAGTAATAGATCTTCAGGCAAAATTACTATGATTT-------GGATTCGGGGAGCTACATAAAAAGATTAGACATTTATAGAAGTAAAAC i canFam3.chr9 C 0 C 0 a score=4095.000000 s hg38.chr17_JH159146v1_alt 90299 1 + 278131 a s panTro4.chr17 66211192 1 - 82630442 a i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24740486 1 - 73212453 a i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47960741 1 - 81552678 a i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53071634 1 + 80904711 a i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52594256 1 + 80997621 a i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47639314 1 + 74645514 a i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9907719 1 - 75148670 a i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112763064 1 + 159171411 a i calJac3.chr5 C 0 C 0 s canFam3.chr9 39326455 1 - 61074082 A i canFam3.chr9 C 0 I 1337 e mm10.chr11 99497760 1436 + 122082543 I a score=103622.000000 s hg38.chr17_JH159146v1_alt 90300 34 + 278131 tgcccatt-aa-aagtgggcaaaggacatgaacaga s panTro4.chr17 66211193 34 - 82630442 tgcccatt-aa-aagtgggcaaaggacatgaacaga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24740487 35 - 73212453 tgcccattaaa-aagtgggcaaaggacatgaacaga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47960742 35 - 81552678 tgcccattaaa-aagtgggcaaaggacatgaacaga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53071635 35 + 80904711 tgcctattaaa-aagtgggcaaaggacatgaacaga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52594257 35 + 80997621 tgcctattaaa-aagtgggcaaaggacatgaacaga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47639315 35 + 74645514 tgcctattaaa-aagtgggcaaaggacatgaacaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9907720 35 - 75148670 tgcccattaaa-aagtgggcaaaggacatgaacaga i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112763065 36 + 159171411 tgcccattaaataaatgggcaaaggacatgaccaga i calJac3.chr5 C 0 C 0 e canFam3.chr9 39326456 1337 - 61074082 I e mm10.chr11 99497760 1436 + 122082543 I a score=484084.000000 s hg38.chr17_JH159146v1_alt 90334 148 + 278131 cactATATACAGA----TACTATTTGTAAGCGACTC--AAGTTGGCTGTTGTTTTCTTCCTCATTTGAAATACTGTATTGAA--------------------GACTTCATAACTCACATCATCTCTCTGTTGGCCCCTTTTTCCTGGACAAATAGAAATATGAGAAAACGGTCT s panTro4.chr17 66211227 150 - 82630442 cactATATACAGA----TACTATTTGTAAGCGACTCTTAAGTTGGCTGTTGTTTTCTTCCTCGTTTGAAATACTGTATTGAA--------------------GACTTCGTAACTCACATCATCTCTCTGTTGGCCCCTTTTTCCTGGACAAATAGAAATATAAGAAAACGGTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24740522 149 - 73212453 cactatatacaga----tACTATTTGTAAGCGACTCTTAAGTTGGCTGTTGTTTTCTTCCTCATTTGAAATACTGTATTGAA--------------------GACTTCGTAACTCACATCATCTCTCTGTTGGCCCCTTTTTCCCGGACAAATAGAAATATGAG-AAATGGTCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47960777 154 - 81552678 cactatatacagatACTTACTATTTGTAAGCGACTCTTAAGTTGGCTATTGTTTTCTTCCTCGTTTGAAATACTGTATTGAA--------------------GACTTCGTAACTCACATCATCTCTCTGTTGTCCCCATTTTCCTGGACAAATAGAAATACGAGAAAATGGTCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53071670 150 + 80904711 cactatatacaga----tACTATTTGCAAGTGACTCTTAAGTTGGCTGTTGTTTTCTTCCTCGTTTGAAATACTGTATTGAA--------------------GACTTCATAACTCACATCTTCTCTCTGTTGGCCCCTTTTTCCTAGACAAATAGAAATATGAGAAAATGATCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52594292 150 + 80997621 cactATATACAGA----TACTATTTGCAAGTGACTCTTAAGTTGGCTGTTGTTTTCTTCCTCGTTTGAAATACTGTATTGAA--------------------GACTTCATAACTCACATCTTCTCTCTGTTGGCCCCTTTTTCCTAGACAAATAGAAATATGAGAAAATGATCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47639350 150 + 74645514 cactatATACAGA----TACTATTTGCAAGCGACTCTTAAGTTGGCtgttgttttcttccttgtttgAAATACTGTATTGAA--------------------GACTTCGTAACTCACATCTTCTCTCTGTTGGCCCCTTTTTCCTAGACAAatagaaatatgagaaaatgatCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9907755 150 - 75148670 cactATATACAGA----TACTATTTGCAAGCGAATCTTAAGTTGGCTGTTGTTTTCTTCCTCATTTGAAATACTGTATTGAA--------------------GGCTTCGTAACTCACATCTTCTCTCTGTTGGCACCTTTTTCCTAGACAAATAGAAATATGAGAAAATGGTCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112763101 169 + 159171411 cactATATACAGA----TACTATTTGCAAGCAGCTTTTAAATTGGCTGTTGTTTTCTTCCTTGTTTGAAACACTGTATTGAATACAGCAGTACCGGCAGCTGGGCTTGCTAACTCGCATCAGCTTTCGCTTAGCCCC-TTTTCCCAGACACATAGAAATATGAGAAAATGGTCT i calJac3.chr5 C 0 C 0 s canFam3.chr9 21747412 146 + 61074082 CAATATATATACA----TATTCTTTGGAAGCAACT-TTAGGTTGACTTGCCTTCCCCTTCTAGTCTAGAATACTATATTGAA--------------------TATTTCAT---TTAAATCTTCTATCTGTAGGCCCCCTTTTCCCGGAAAAATCAAAATATGAAAAAATGTTTT i canFam3.chr9 T 45580 n 1337 e mm10.chr11 99497760 1436 + 122082543 I a score=16304.000000 s hg38.chr17_JH159146v1_alt 90482 5 + 278131 GAGGA s panTro4.chr17 66211377 5 - 82630442 GAGGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24740671 5 - 73212453 GAGGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47960931 5 - 81552678 GAGGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53071820 5 + 80904711 GAGGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52594442 5 + 80997621 GAGGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47639500 5 + 74645514 GAGGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9907905 5 - 75148670 GAGGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112763270 5 + 159171411 AAGGA i calJac3.chr5 C 0 C 0 e canFam3.chr9 21747558 1337 + 61074082 I e mm10.chr11 99497760 1436 + 122082543 I a score=75115.000000 s hg38.chr17_JH159146v1_alt 90487 21 + 278131 TCATGCTGTAACAAAGTGTTT s panTro4.chr17 66211382 21 - 82630442 TCATGCTGTAACAAAGTGTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24740676 21 - 73212453 TCATGCTGTAACAAAATGTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47960936 21 - 81552678 TCATGTTGTAACAAAGTGTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53071825 21 + 80904711 TAGTGCTGTAACAAAGTGTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52594447 21 + 80997621 TAGTGCTGTAACAAAGTGTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47639505 21 + 74645514 TAGTGCTGTAACAAAGTGTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9907910 21 - 75148670 TCATGCTGTAACAAAGTGTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112763275 21 + 159171411 TCATGCTGTAACAAAGTGTTT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39327793 21 - 61074082 tCATGCTATAACAAAATGCCT i canFam3.chr9 I 1337 C 0 e mm10.chr11 99497760 1436 + 122082543 I a score=722272.000000 s hg38.chr17_JH159146v1_alt 90508 220 + 278131 TATATCAGCTTTACTTGACCACTCA-TGCTTATGCCCTTGTAGCATCT-TATCCATT---GGGAAAATGTTCCCAGCTGAAAACAG-------------TCAAT-TGCAGCTGCAA-----TTTTAAACATGGAATGCAATAGATAGACTTTAAGAAGTTAGTAAAA-TCTCTAAAACTATATGCAAAAATTTCTCTGCATGCTTATATGCTTGCTTTTCTGAGGAATAG--AAGCTTTTATTAACT s panTro4.chr17 66211403 233 - 82630442 TATATCAGCTTTACTTGACCACTCA-TGCTTACGCCCTTGTAGCATCT-TATCCATT---GGGAAAATGTTCCCAGCTGAAAACAATCAATCCAGTGCTTCAAT-TGCAGCTGCAA-----ttttaaacatggaatgcaatagatagactttaagaagttagtaaaa-tctctaaaactatatgcaaaaatttctctgcgtgcttatatgcttgcttttctgaggaatag--aagcttttattaACT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24740697 233 - 73212453 TATATCAGCTTTACTTGACCACTTA-TGCTTAAGCCCTTGTAGCATCT-TATCCATT---GGGAAAATGTTCCCAGCTGAAAACAATCAATCCAGTGCTTCAAT-TGCAGCTGCAA-----ttttaaacatggaattcaatagacagactttaagaagttaataaaa-tctctaaaactatatgcaaaaatttctctgcgtgcttatatgcttacttttctgaggaatag--aagcttttattaACT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47960957 232 - 81552678 TATATCAGCTTTA-TGGACCACTCA-TGCTTAAGCCCTTGTAGCATCT-TATCCATT---GGGAAAATGTTCCCAGCTGAAAACAATCAATCCAGTGCTTCAAT-TGCAGCTGCAA-----ttttaaacatggaattccatagatagactttaagaagttagtaaaa-tctctaaaactatatgcaaaaatttctctgcgtgcttatatgcttacttttctgaggaatag--aagcttttattaACT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53071846 218 + 80904711 TATATCAGCCTTACTTGACCACTCA-TGCTTAAGCCCTTGTAGCATCT-TATTCATT---GGGAAAACGTTCCCAGCTGAAAACAATCAATCCCGTGCTTCAAT-TGCAGCTGCAA-----TTTTAAACATGAAATTCAATAGATAGACTTTAAGAAGTTAGTAAAA-TCTCTAAAGCTATATGCAAAAATTTCTCTGCAAGTTTATATGCTTACTTTTCTGAGGA-----------------AACT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52594468 218 + 80997621 TATATCAGCCTTACTTGACCACTCA-TGCTTAAGCCCTTGTAGCATCT-TATTCATT---GGGAAAACGTTCCCAGCTGAAAACAATCAATCCCGTGCTTCAAT-TGCAGCTGCAA-----TTTTAAACATGAAATTCAATAGATAGACTTTAAGAAGTTAGTAAAA-TCTCTAAAGCTATATGCAAAAATTTCTCTGCAAGTTTATATGCTTACTTTTCTGAGGA-----------------AACT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47639526 218 + 74645514 TATATCAGCCTTACTTGACCACTCA-TGCTTAAGCCCTTGTAGCATCT-TATTCGTT---GGGAAAACGTTCCCAGCTGAAAACAATCAATCCCGTGCTTCAAT-TGCAGCTGcaa-----ttttaaacatgaaattcaaTAGATAGACTTTAAGAAGTTAGTAAAA-TCTCTAAAGCTATATGCAAAAATTTCTCTGCAAGTTTATATGCTTACTTTTCTGAGGA-----------------aact i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9907931 218 - 75148670 TATATCCGCCTTACTTGACCACTCA-TGCTTAAGCCCTTGTAGCATCT-TATTCATT---GGGAAAACGTTCCCAGCTGAAAACAATCAATCCCGTGCTTCAAT-TGCAGGTGCAA-----TTTTAAACATGAAATTCAACAGATAAACTTTAAGAAGTTAGTAAAA-TCTCTAAAACTATATGCAAAAATTTCTCTGCAAGTTTATATGCTTACTTTTCTGAGGA-----------------AACT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112763296 227 + 159171411 T-TATTAGCCTTACTCTATCACTCA-CGTTTATGCCCTTGTAGCTTCT-TATCCATT---GGGAAAATGTTCTTAGCTGAAAA-----AACTCAGCGCTTCAAT-TGCAGCTGTAA-----TTTTAAACACGAAATtccttagatagactttaagaatttagtaaaa-tctctaaaactgtatgcaaaatttttcctgtgtgtttatatgcttacttttctgaggagtag--gagctttcattaACT i calJac3.chr5 C 0 C 0 s mm10.chr11 99499196 244 + 122082543 TATGCCACTTTCATGTGATCACTAACTACTTCAGTTCCTGTAGTGCCT-CATTCATTTGGGGGAAAAAAATCCCAGGAGAAAAAAATTAATTTAATGCTTTAATCTGAAGCTGAGATTTTTTTTTAAACTCAGAGTTTAGCAGATTGATTATAAAAAGCAAGTAAAATTCTTGAAAAGTGTATGTAATTTTCTTCCTATCTTCTTCGCACCACCCTTTCCCATGGAGATT--GAGTGTTCACTGACT i mm10.chr11 I 1436 C 0 s canFam3.chr9 39327814 233 - 61074082 TATGTTTGCCTTGCTTGACCATCAG-TGCTTAGACTCTTGTAGCTTCTGTATCCCAG---AGGAACAT-TTCCCAGGTGAAAA--AACAAGACAGTGCCTTGTT-CTAAACTGAGC----TTTTTTTTCTTGGAATTCAATAGATAGACT-TAGGAAGGTAATAACA-TCTCTGAAAGTGTGTGCAAGTTTGTCGCTGTATATTCATATGTTCACTCTTCTGAGAGGAAGCCACACTTTTGTCAGCT i canFam3.chr9 C 0 I 285 a score=10764.000000 s hg38.chr17_JH159146v1_alt 90728 3 + 278131 GTT s panTro4.chr17 66211636 3 - 82630442 GTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24740930 3 - 73212453 GTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47961189 3 - 81552678 GTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53072064 3 + 80904711 GTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52594686 3 + 80997621 GTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47639744 3 + 74645514 gtt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9908149 3 - 75148670 GTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112763523 3 + 159171411 GTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99499440 3 + 122082543 TTT i mm10.chr11 C 0 I 399 e canFam3.chr9 39328047 285 - 61074082 I a score=988901.000000 s hg38.chr17_JH159146v1_alt 90731 362 + 278131 GTATTTAAAAATTTCAATTAggccgggcttggtggttcatgcctgtaatcccagcactttagggaggccgaagcaggtggattgatcacctaagggtatgagttcaagaccagcttggccaacatggtgaaatccccgtctctaccaaaaatac-aaaaaatttgctggacatggtggcgtgcacctgtaatcccagctactctggaggctgaggcag------gagaattgcttgagcctaggaggcagaggttggagtgagctgagatcacaccattgcactccagcctgggt---gacaagagtgaatctccatctcaaaagaaaTTTTTTTAAATTAAT--TATTAtttgttgagacagggtctcacttt s panTro4.chr17 66211639 362 - 82630442 Gtatttaaaaatttcaattaggccgggcttggtggctcatgcctgtaatcccagcactttagggaggctgaagcaggtggattgatcacctaagggtatgagttcaagaccagcttggccaacatggtgaaacccccgtctctactaaaaatac-aaaaaatttgctggacatggtggcatgcacctgtaatcccagctactctggaggctgaggcag------gagaattgcttgagcctaggaggcagaggttggagtgagctgagatcacaccattgcactccagcctgggt---gacaagagtgaatctccatctcaaaagaaattttttaaaattaat--tattatttgttgagacagggtctcacttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24740933 366 - 73212453 Gtatttaaaaatttcaattaggccgggcgtggtggctcatgcctgtaatcccagcacttt-gggaggctgaagcaggtggattgatcatctgagggcacgagttcaagaccagcttggccaacatggtgaaa-ccccgtctctactaaaaatac-aaaaaattagctggacatggtggcatgcacctgtaatcccagctactctggaggctgaggcaggaggctgaggcttgcttgaacccaggaggcggaggttggagtgagctgagatcataccattgcactccagcctgggt---gacaagagtgaatctccatctcaaaagaaattttttaaaattaat--tattatttgttgagacagggtctcatttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47961192 351 - 81552678 GTATTTAAAAATTTCAATTGggccaggcgtggtggctcatgcctgtaatcccagcatttt-gggaggccgaagtgggtggattggtcacctgagggcacgagttcaaga---------ccaacatggtgaaa-ccccatctctactaaaaacac-aaaaaattagctggacatggtggtgtgcacctgtaatcccagctactctggaagctgaggcag------gagaattgcttgaacccaggaggcggaggttggagtgagctgagatcacaccattgcactccagcctgggt---gacaagagtgaatttccatctgaaaagaaatttttttaaattaat--tattatttgttgagatagggtctcacttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53072067 360 + 80904711 Gtttttaaaaatttcaattaggctgggcgtggtggctcatgcctgtaatcccagcacttt-gggaggccgaagcgggcggatcgatcacttgaactcaggggttcgagaccagcttggccaacatggtgaaa-ccctatctctactaaaaatac-aaaaaattagccggacgtggtggcatgcgcctgtaatcccagctactctggaggctgaggcag------gagaatcacttgaatctaggaggcagaggttgaaatgagccgagattgcaccattgcacgccagcctgggt---gacaagagtgaatctccaactcaaaaataatttttaaaaattaat--tattattttttgagacagggtctcacttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52594689 360 + 80997621 GTTTTTAAAaatttcaattaggctgggcgtggtggctcatgcctgtaatcccagcacttt-gggaggccgaagcgggtggatcgatcacttgaactcaggggttcgagaccagcttggccaacatggtgaaa-ccctatctctactaaaaatac-aaaaaattagctggacgtggtggcatgcgcctgtaatcccagctactctggaggctgaggcag------gagaatcacttgaatctaggaggcagaggttgaaatgagccgagattgcaccattgcactccagcctgggt---gacaagagtgaatctccaactcaaaaataattttttaaaattaat--tattattttttgagacagggtctcacttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47639747 360 + 74645514 gtttttaaaaatttcaattaggctgggcgtggtggctcatgcctgtaatcccagcacttt-gggaggccgaagcgggtggatcgatcacttgaactcaggggttcgagaccagcttggccaacatggtgaag-ccctatctctactaaaaatac-aaaaaattagccggacgtggtggcatgcgcctgtaatcccagctactctggaggctgaggcag------gagaatcacttgaatccaggaggcagaggttgcagtgagacgagattgcaccattacactccagcctgggt---gacaagagtgaatctccatctcaaaaataattttttaaaattaat--tattattttttgagacaggttctcacttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9908152 361 - 75148670 GTTTTTAAAAATTTCAATTAggccgggcgtggtggctcatgcctgtaatcccagcacttt-gggaggccgaagcgggtggatcaatcacttgaactcaggagttcaagactagcttggccaacatggtgaaa-ccctatctctactaaaaatacaaaaaaattagccggatgtggtggcatgcgcctgtaatcccagctactctggaggctgaggcag------gagaatcacttgaacccaggaggcagaggttgaagtgagccgagattgcaccattgcactacaacctgggt---gacaagagtgaatgtccatctcaaaaaTAATTTTTTAAAATTAAT--TATTAttttttgagacagggtctcacttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112763526 357 + 159171411 CTTCTAAAAAATTTTAATTAGGCCAg---tggtggctcatgcctgtaatcccagcacttt-gggaggctga----ggtggttggatcacctgaggtcaggaattcttgaccagcttggccaacatggagaaa-ccctgtctctactaaaaatac-aaataattagccggatgtggtggcacgtgcttataatcccagctgctatggaggtttaggcag------gagaattgcttgaacccaggaggcagaggttgcagtgagccgagattgtgcaattgcactccagcctggggtgaaacaagagtgaaactccatctcaaaaa-aaTTTTTTTATATTGATAATATTTTTTTGAGAGATAGCGTCTCACTTT i calJac3.chr5 C 0 I 4682 e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I a score=180856.000000 s hg38.chr17_JH159146v1_alt 91093 72 + 278131 gttgcctgagctgtgggcagtggtgcaatcatggttcactacagcctcaacctcctggctcaagtgatcttc s panTro4.chr17 66212001 72 - 82630442 gttgcctgagctgtgggcactggtgcaatcatggttcactacagcctcaacctcctggctcaagtgatcttc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24741299 72 - 73212453 gttgcctgagctgtgggcagtggtgcaatcatggctcactacagcctcaacctcctggctcaagtgatcttc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47961543 72 - 81552678 gttgcctgagctgtgggcagtggtgcaatcatggctcactacagcctcaacctcctggctcaagtgatcttc i nomLeu3.chr19 C 0 M 325 s rheMac3.chr16 53072427 72 + 80904711 gttgcctgagctgtaggcagtggtgcaatcatggctcactgcagtctcaacctcctggctcaagtgatcttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52595049 72 + 80997621 gttgcctgagctgtaggcagtggtgcaatcatggctcactgcagcctcaacctcctggctcaagtgatcttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47640107 72 + 74645514 gttgcctgaGCTgtaggcagtggtgcaatcatggctcactgcagcctcaacctcctggctcaagtgatcttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9908513 72 - 75148670 gttgcctgagctgttggcagtggtgcaagcatggctcactgcagcctcaacctcctggctcaagtgatcttt i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e calJac3.chr5 112763883 4682 + 159171411 I a score=645647.000000 s hg38.chr17_JH159146v1_alt 91165 379 + 278131 ctgcctccacctccccagtagctgggacttacaggcgtgcatcaccacaccaggcaaattcttttttt-aatgttttgtagagacgaggccttgctacgttgcttaggctggtctcaaactcctgggctcatgcaattctcctatcttagcatctcgaagaggtaagataaaaggcatgagccacttcacctggccTCATTAACTTTTCAAAGGAGTATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCATTGAGctcctccttctcccttt---ctcctccccctccttctccttcttctc---cttcttcctcttcctcctccacctcctcctcttctt------------cttctcctcttcctcct s panTro4.chr17 66212073 392 - 82630442 ctgcctccacctccccagtagctgggacttacaggcgtgcatcaccacaccaggcaaattctttttttaaatgttttgtagagacgaggcctttctacgttgcttaggctggtctcaaactcctgggctcatgcaattctcctatcttagcatctcaaagaggtaagataaaaggcatgagccacttcacctggccTCATTAACTTTTCAAAGGAGTATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCATTGAGctcctccttctcccttt---ctcctccccctccttctccttcttctc---cttcttcctcttcctcctccacctcctcctcttcttctccttctcctccttctcctcttcctcct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24741371 379 - 73212453 ctgcctcc-cctccccagtagctgggacttacaggcatgcaccaccacaccaggcaaattctttctttaaatgttttgtagagacgaggccttgctacgttgctcaggctggtctcaaactcctgggctcgcgcaattctcccatcttagcatcttgaagtggtaagagtaaaggcatgagccacttcacctggccTCATTAACTTTTCAAAGGAGTATATAAGTTTAAAATGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCATTGAGctccttcttctcccttt---ctcctccccctccttctccttcttctc---cttcttcctcttcctcctccacctcctcctcctctt------------cttctccttctcctcct i ponAbe2.chr17 C 0 I 555 s rheMac3.chr16 53072499 365 + 80904711 ctgcctccacttccccagtagctgggac-tgtaggcatgcaccaccacaccaggcaaattctttctaaaaatgttttgtagacacgaggtcttgctacgttgctcaggctggtctcaaactcctgggctcaagcaattctcctatcttggcatctcgaagtggtaaga-----------------ttCACCTGGTCTCATTAACTTTTCAAAGGATTATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCAGTGAGCTCCTTTTTCTCTGTTT---ctcctcctcccctccctccttcttctccttcttcttcctcttcctcctccacctcctcctcgtctt------------ctccttctccttttcct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52595121 382 + 80997621 ctgcctccacttccccagtagctgggac-tgtaggcatgcaccaccacaccaggcaaattctttctaaaaatgttttgtagacacgaggtcttgctacgttgctcaggctggtctcaaactcctgggctcaagcaattctcctatcttggcatctcgaagtggtaagattaaaggcatgagccacttcacctggtcTCATTAACTTTTCAAAGGAGTATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCAGTGAGCTCCTTTTTCTCTGTTT---ctcctcctcccctccctccttcttctccttcttcttcctcttcctcctccacctcctcctcttctt------------ctccttctccttttcct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47640179 381 + 74645514 ctgcctccacttccccagtagctgggac-tgtaggcatgcaccaccacaccaggcaaattctttctaaaaatgttttgtagacacgaggtcttgctacgttgctcaggctggtctcaaactcctgggctcaagcaattctcctatcttgGCATCTCGAAGTGGtaagattaaaggcatgagccacttcacctggtcTCATTAACTTTTCAAAGGAGTATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCAGTGAGctcctttttctctgttt---ctcctcctcccctccctca-tcttctctttcttcttcctcttcctcctccacctcctcctcttctt------------ctccttctccttttcct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9908585 385 - 75148670 ctgcctccacctccccagtagctgggac-tataggcatgcaccaccacaccagacaaattctttttaaaaatgttttgtagagaggaggtcttgctacgttgctcaggctggtctcaaactcctgggctcaagcaattctcctatcttggcatcttgaagtggtaagattaaaggcatgagccacttcacctggtcTCATTAACTTTTCAAAGGAATATATAAGTTTAAAAAGTCAGGATCCAGTGATGTAAAACTTTAGTTTCCTTCCCTGTTGCCACTGAGctcctttttctccatttctcctcctcctcccctccctccttcttctccttcttcttcctcttcctcctccacctcctcctcttctc------------cttctccttttcctcct i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e calJac3.chr5 112763883 4682 + 159171411 I e nomLeu3.chr19 47961615 325 - 81552678 M a score=11160.000000 s hg38.chr17_JH159146v1_alt 91544 9 + 278131 gcttctcct s panTro4.chr17 66212465 9 - 82630442 gcttctcct i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53072864 9 + 80904711 ccttctcct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52595503 9 + 80997621 ccttctcct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47640560 9 + 74645514 ccttctcct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9908970 9 - 75148670 ccttctcct i chlSab2.chr16 C 0 I 29 e ponAbe2.chr17 24741750 555 - 73212453 I e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e calJac3.chr5 112763883 4682 + 159171411 I e nomLeu3.chr19 47961615 325 - 81552678 M a score=1910.000000 s hg38.chr17_JH159146v1_alt 91553 2 + 278131 ct s panTro4.chr17 66212474 2 - 82630442 ct i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53072873 2 + 80904711 ct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52595512 2 + 80997621 ct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47640569 2 + 74645514 ct i papAnu2.chr16 C 0 I 3 e ponAbe2.chr17 24741750 555 - 73212453 I e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e calJac3.chr5 112763883 4682 + 159171411 I e chlSab2.chr16 9908979 29 - 75148670 I e nomLeu3.chr19 47961615 325 - 81552678 M a score=1746.000000 s hg38.chr17_JH159146v1_alt 91555 3 + 278131 tcc s panTro4.chr17 66212476 3 - 82630442 tcc i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53072875 3 + 80904711 tcc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52595514 3 + 80997621 tcc i macFas5.chr16 C 0 C 0 e ponAbe2.chr17 24741750 555 - 73212453 I e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e calJac3.chr5 112763883 4682 + 159171411 I e chlSab2.chr16 9908979 29 - 75148670 I e papAnu2.chr16 47640571 3 + 74645514 I e nomLeu3.chr19 47961615 325 - 81552678 M a score=-187.000000 s hg38.chr17_JH159146v1_alt 91558 3 + 278131 tcc s panTro4.chr17 66212479 2 - 82630442 t-c i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53072878 3 + 80904711 tcc i rheMac3.chr16 C 0 I 34 e ponAbe2.chr17 24741750 555 - 73212453 I e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e calJac3.chr5 112763883 4682 + 159171411 I e chlSab2.chr16 9908979 29 - 75148670 I e papAnu2.chr16 47640571 3 + 74645514 I e macFas5.chr16 52595517 0 + 80997621 C e nomLeu3.chr19 47961615 325 - 81552678 M a score=2737.000000 s hg38.chr17_JH159146v1_alt 91561 28 + 278131 ccccctcccctcctccccttcctcctcc s panTro4.chr17 66212481 28 - 82630442 ccccctcccctcctccccttcctcctcc i panTro4.chr17 C 0 C 0 e ponAbe2.chr17 24741750 555 - 73212453 I e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e calJac3.chr5 112763883 4682 + 159171411 I e chlSab2.chr16 9908979 29 - 75148670 I e papAnu2.chr16 47640571 3 + 74645514 I e macFas5.chr16 52595517 0 + 80997621 C e rheMac3.chr16 53072881 34 + 80904711 I e nomLeu3.chr19 47961615 325 - 81552678 M a score=20030.000000 s hg38.chr17_JH159146v1_alt 91589 111 + 278131 cctcctccctctcttccccctcctccccgcctcctcctccccctcctcctccccctcctcctcctcctccccctcctcctcctccccctcctcctcctctttcttcttctt s panTro4.chr17 66212509 102 - 82630442 cgtcc---------tccccctcctctcctcctccctctcttccccctcctccccctcctcctcctccccctcctcctcctctttctccttcttcttctctttcttcttctt i panTro4.chr17 C 0 C 0 s chlSab2.chr16 9909008 105 - 75148670 cctcctttctctcttcccactcctct-----tccttttcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcct-cttcttcttcttcttcttcttctt i chlSab2.chr16 I 29 C 0 e ponAbe2.chr17 24741750 555 - 73212453 I e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e calJac3.chr5 112763883 4682 + 159171411 I e papAnu2.chr16 47640571 3 + 74645514 I e macFas5.chr16 52595517 0 + 80997621 C e rheMac3.chr16 53072881 34 + 80904711 I e nomLeu3.chr19 47961615 325 - 81552678 M a score=12772.000000 s hg38.chr17_JH159146v1_alt 91700 29 + 278131 tttctttctcttcttcttcctcctcctcc s panTro4.chr17 66212611 29 - 82630442 tttcttcctcttcttcttcctcctcctcc i panTro4.chr17 C 0 C 0 s chlSab2.chr16 9909113 29 - 75148670 cttcttcttcttcttcttcctcctcctcc i chlSab2.chr16 C 0 I 8 s calJac3.chr5 112768565 29 + 159171411 TTTTcttctcctcctcttccacctccttc i calJac3.chr5 I 4682 C 0 e ponAbe2.chr17 24741750 555 - 73212453 I e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e papAnu2.chr16 47640571 3 + 74645514 I e macFas5.chr16 52595517 0 + 80997621 C e rheMac3.chr16 53072881 34 + 80904711 I e nomLeu3.chr19 47961615 325 - 81552678 M a score=10962.000000 s hg38.chr17_JH159146v1_alt 91729 78 + 278131 ccagtcgtcatc-ttcttcttccttttcttcttctccttcctcctcttctccttctccctcctcctccttcttccttct s panTro4.chr17 66212640 79 - 82630442 cccctcgtcatcattcttcttccttttcttcttctcctttctcctcttctccttctccctcctcctccttcttccttct i panTro4.chr17 C 0 C 0 s calJac3.chr5 112768594 59 + 159171411 -------tcatc-ctcctccttctcctcctcttctacctcctcttcttctcctcctcc--tctcctctt---------- i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24741750 555 - 73212453 I e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e chlSab2.chr16 9909142 8 - 75148670 I e papAnu2.chr16 47640571 3 + 74645514 I e macFas5.chr16 52595517 0 + 80997621 C e rheMac3.chr16 53072881 34 + 80904711 I e nomLeu3.chr19 47961615 325 - 81552678 M a score=7610.000000 s hg38.chr17_JH159146v1_alt 91807 181 + 278131 tccttctcttcttcttcttcttatcctcctcctccttcatcttcctcctcctcctcttcttctcctcctccttatccttcctcctcccccctcctcttcttcttcttcttctccttctccttcttcttcctcttcttcttcctcctcctcccccctcgtcgtcatcttcttcttcttcctt s calJac3.chr5 112768653 153 + 159171411 tctcttattttctctcactctcctcctcctcctttttcctcttcctctacctcctcctcttcttctccttctcaccct-cctcctc-----ttctcttctcccactccctctcctcctcctcctccttcttctccttcttcctc----------------------ttcttcttcctcctc i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24741750 555 - 73212453 I e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e chlSab2.chr16 9909142 8 - 75148670 I e papAnu2.chr16 47640571 3 + 74645514 I e macFas5.chr16 52595517 0 + 80997621 C e rheMac3.chr16 53072881 34 + 80904711 I e nomLeu3.chr19 47961615 325 - 81552678 M e panTro4.chr17 66212719 0 - 82630442 C a score=7808.000000 s hg38.chr17_JH159146v1_alt 91988 59 + 278131 ttcttcttctcctttctcttctccttctccctcctcctccttcttcttccttttcttcg s nomLeu3.chr19 47961943 58 - 81552678 tccttctcctcctcctccttctcctcctcc-tcctccttcctcttcttcctcctccact i nomLeu3.chr19 M 325 C 0 s calJac3.chr5 112768806 54 + 159171411 ctcttcctcttctttttctccttcttctcc-tcctcct--cttttcttcctctcctt-- i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24741750 555 - 73212453 I e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e chlSab2.chr16 9909142 8 - 75148670 I e papAnu2.chr16 47640571 3 + 74645514 I e macFas5.chr16 52595517 0 + 80997621 C e rheMac3.chr16 53072881 34 + 80904711 I e panTro4.chr17 66212719 0 - 82630442 C a score=12832.000000 s hg38.chr17_JH159146v1_alt 92047 36 + 278131 tcttcttctccttcctcctcttctccttctccctcc s ponAbe2.chr17 24742305 36 - 73212453 tcttcttctccttcctcctcttctccttctccctcc i ponAbe2.chr17 I 555 C 0 s nomLeu3.chr19 47962001 36 - 81552678 tcttcttcttctccttctccttctccttctccttcc i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112768860 30 + 159171411 --tcttccttcttcctcttcttctttttctcc---- i calJac3.chr5 C 0 C 0 e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e chlSab2.chr16 9909142 8 - 75148670 I e papAnu2.chr16 47640571 3 + 74645514 I e macFas5.chr16 52595517 0 + 80997621 C e rheMac3.chr16 53072881 34 + 80904711 I e panTro4.chr17 66212719 0 - 82630442 C a score=6487.000000 s hg38.chr17_JH159146v1_alt 92083 17 + 278131 tcctccttcttc-cttct s ponAbe2.chr17 24742341 17 - 73212453 tcctccttcttc-cttct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47962037 18 - 81552678 tcttcctcttcctcttcc i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47640574 12 + 74645514 tcctccttctcc------ i papAnu2.chr16 I 3 I 2 s calJac3.chr5 112768890 16 + 159171411 tcctcctctttc--ttct i calJac3.chr5 C 0 C 0 e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e chlSab2.chr16 9909142 8 - 75148670 I e macFas5.chr16 52595517 0 + 80997621 C e rheMac3.chr16 53072881 34 + 80904711 I e panTro4.chr17 66212719 0 - 82630442 C a score=10673.000000 s hg38.chr17_JH159146v1_alt 92100 13 + 278131 tccttctcttctt s ponAbe2.chr17 24742358 13 - 73212453 tccttctcctctt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47962055 13 - 81552678 tcttcctcttctt i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52595517 13 + 80997621 tcctcctcctcct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47640588 13 + 74645514 cttttctcctcat i papAnu2.chr16 I 2 C 0 s calJac3.chr5 112768906 13 + 159171411 ttctcttcatctt i calJac3.chr5 C 0 C 0 e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e chlSab2.chr16 9909142 8 - 75148670 I e rheMac3.chr16 53072881 34 + 80904711 I e panTro4.chr17 66212719 0 - 82630442 C a score=11286.000000 s hg38.chr17_JH159146v1_alt 92113 9 + 278131 cttcttctt s panTro4.chr17 66212719 9 - 82630442 cttcttctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24742371 9 - 73212453 cctcttcct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47962068 9 - 81552678 cttcttctt i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52595530 9 + 80997621 tcttttctc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47640601 9 + 74645514 ccttttcct i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112768919 9 + 159171411 cctcttcat i calJac3.chr5 C 0 C 0 e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e chlSab2.chr16 9909142 8 - 75148670 I e rheMac3.chr16 53072881 34 + 80904711 I a score=-675.000000 s hg38.chr17_JH159146v1_alt 92122 3 + 278131 ct-------c s panTro4.chr17 66212728 3 - 82630442 ct-------c i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24742380 3 - 73212453 ct-------t i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47962077 10 - 81552678 ctttcttcct i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52595539 1 + 80997621 ---------c i macFas5.chr16 C 0 I 14 s papAnu2.chr16 47640610 1 + 74645514 ---------t i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9909150 3 - 75148670 ct-------c i chlSab2.chr16 I 8 C 0 s calJac3.chr5 112768928 3 + 159171411 ct-------t i calJac3.chr5 C 0 C 0 e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I e rheMac3.chr16 53072881 34 + 80904711 I a score=53043.000000 s hg38.chr17_JH159146v1_alt 92125 30 + 278131 ctccttctccttcctcctcttcctcctcct s panTro4.chr17 66212731 30 - 82630442 cttcctcctcttcctcctcctcctcttcct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24742383 30 - 73212453 cttcctcctcctcctcctcttcttcttcct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47962087 30 - 81552678 cttcctcttctccttcctcctcttctcctt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53072915 23 + 80904711 -------ctcctcctcctttctctcttccc i rheMac3.chr16 I 34 C 0 s macFas5.chr16 52595554 23 + 80997621 -------ctcctcctcctttctctcttccc i macFas5.chr16 I 14 C 0 s papAnu2.chr16 47640611 23 + 74645514 -------ctcctcctcctttctctcttccc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9909153 23 - 75148670 -------ctcctcctcctcctcctcctcct i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112768931 30 + 159171411 tgtcttcttcttcctcctccttttcctcct i calJac3.chr5 C 0 C 0 e canFam3.chr9 39328047 285 - 61074082 I e mm10.chr11 99499443 399 + 122082543 I a score=1079308.000000 s hg38.chr17_JH159146v1_alt 92155 350 + 278131 cttcc--------tcttcctcttcttctttcttcc-tTTTTTACTTTGCCATAGAGACAATACTTTAGGTTCACTAAAATTTTTGCAGTTGTGGGATATTGATTCAAGCACCTGCTCATTTA-AAGTGGTTGGCTATATTTAAAATGTTTTTATTGCTTTTTATCTCATACCCCCAAACTGTGCATTTCATCTCCAATTTCATTATTGGTTGAATTCCACAGCCACAAATCATATGACTTAAAATCTTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTTAGGGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTCCTACTT--AAAAACTATTTTAAAtttttattttaa s panTro4.chr17 66212761 350 - 82630442 cttcc--------tcttcttcttcttctttcttcC-TTTTTTACTTTGCCATAGAGACAATACTTTAGGTTCACTAAAATTTTTGCAGTTGTGGGATATTGATTCAAGCACCTGCTCATTTA-AAGTGGTTGGCTATATTTAAAATGTTTTTATTGCTTTTTATCTCATACCCCCAAACTGTGCATTTCATCTCCAGTTTCATTATTGGTTGAATTCCACAGCCACGAATCATATGACTTAAAATCTTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTTAGGGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTCCTACTT--AAAAACTATTTTAAAtttttattttaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24742413 347 - 73212453 cttct--------tcctcttcttcttc-ttcttcc-ttttTTACTTTGCCATAGAGACAATGCTTTAGGTTCACTAAAATTTTTGCAGTTGTGGGATATTGATTCAAGCACCTGCTCATTTA-AAGTGGTTGGCTATATTTAAAATG-TTTTATTGCTTTTTATCTCATATCCCCAAACCGTGCATTTCATCCCCAATTTCGTTATTGGTTGAATTCCACAGCCACAAATCATATGACTTAAAATCTTCTAACTTA---------GTTATTTATTTTATTGAAGATTT-CCTTT-GGGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTCCTACTT--AAAAACTATTTTAAAtttttattttag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47962117 348 - 81552678 ctcgc--------tcctcctcctccttcttcttcc-ttttttacttTGCCATAGAGACAATGCTTTAGATTCACTAAAATTTTTGCAGTTATGGGATATTGATTCGAGCACCTGCTCATTTA-AAGTGGTTGGCTATATTTAAAATGTTTTTATTGCTTTTTTTCTCATATCTCCAAACTGTGCATTTCATCTCCAAATTCATTATTGGTTGAATTCCACAGCCAC-AATCATTTGACTTAAAATCTTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTT-AGGGTACTCTGGTTTTACAAATAGACTAATATGACACAATTCCTACTT--AAAAACTATTTAAAAtttttattttaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53072938 350 + 80904711 cctcc--------tcctcctcctccttctTCTTCCTTTTTTTACTTTGGCATAGAGACAATGCTTTAGGTTCACTAAAGTTTTTGCAGTTGTGGGATATTGATTAAAACACCTGCTCATTT--AAGTGGTTGGCTATATTTAAAATGTTTTTATTGCTTTTTTTCTCCTACCCCCAAACTGTGCATTTCGTCTCTAATTTCATTATTGGTTAAATACCACAGCCACAAATAATTTGACTTAAAATCCTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTTAGAGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTCCTACtt--aaaaattatttaaaatttttattttaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52595577 350 + 80997621 cctcc--------tcctcctcctccttcttcttcctTTTTTTACTTTGGCATAGAGACAATGCTTTAGGTTCACTAAAGTTTTTGCAGTTGTGGGATATTGATTAAAACACCTGCTCATTT--AAGTGGTTGGCTATATTTAAAATGTTTTTATTGCTTTTTTTCTCCTACCCCCAAACTGTGCATTTCATCTCTAATTTCATTATTGGTTGAATACCACAGCCACAAATCATTTGACTTAAAATCCTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTTAGAGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTCCTACTT--AAAAATTATTTAAAAtttttattttaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47640634 358 + 74645514 cctcctctttctttcctcctcctcctccttcttcctttttttacttTGGCATAGAGACAATGCTTTAGGTTCACTAAAGTTTTTGCAGTTGTGGGATATTGATTAAAACACCTGCTCATTT--AAGTGGTTggctatatttaaaatgtttttattgctttttttctcctaCCCCCAAACTGTGCATTTCATCTCTAATTTCATTATTGGTTGAATACCACAGCCACAAATCATTTGACTTAAAATCCTCTAACtta---------gttattaattttattgaagattt-cCTTTAGAGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTcctcctt--aaaaattatttaaaatttttattttaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9909176 357 - 75148670 cctct-cttcttcttcttcttcttcctcttcttcctttttttacttTGGCATAGAGACAATGCTTTAGGTTCACTAAAGTTTTTGCAGTTGTGGGATATTGATTAAAACACCTGCTCATTT--AAGTGGTTGGCTATATTTAAAATGTTTTTGTTGCTTTTTTTCTCCTACCCCCAAACTGTGCATTTCATCTCTAATTTCATTATTGGTTGAATACCACAGCCACAAATCATTTGACTTAAAATCCTCTAACTTA---------GTTATTAATTTTATTGAAGATTT-CCTTTAGAGGTACTCTGGTTTTATTAATAGACTAATATGACAGAATTCCTACTT--AAAAATTATTTTAAAtttttattttaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112768961 347 + 159171411 ccttt--------ttttcccctccttttcctcttc-tttttttctttgtcct---GATGATGCTTTAGGTTTACTAAAATTTTTGCAGTTGTGGGATATTGATTCAAGCAACTGTTCATTTA-CAGTGGTTGAATATATCTAAAATGATTCTACTGCTTTTT-TCTCCTACCCCCAAAC--TGGATTTCAGCTCTAATTCCATTATTGGTTGAATTCCACAGCCACAAATCATTTGACTTAAAATCCTCTAAATTA---------GTGATTAATTTTATTGAAGATTTCCCTTTAGAGGTACTCTGGTTTTATAAATAGACTAATATGACACAATTTCCACtttaaaaatttattttaaatttttatttCAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39328332 351 - 61074082 CCTCC--------TTATCCTCTCTATTTTATTACTATTTTTTAA--AACCATAAAGCTGATGTTTCAGATTCACCAAAATTTTTGTACTTGCAGGATGTCAATTCGTGCATTTGTTCATTTACAAATAGCCACCTGTGTTTAAAATGTTTCTATTCCTTTTTTTCTCCCACCCTTAAACTATGCATTTTGTCTCTGATTCCACTGCTACTTAAACTCCATAATCACACATAATTAGGGTTAAAATCATCTAATTTAAATAACTTCATTATTTa-tttattgagagttt-cctttagaggtgcttggg-------actagactgataaggcacagttcctgcct--tcaagcagccttcagtctatggTTTCA i canFam3.chr9 I 285 C 0 e mm10.chr11 99499443 399 + 122082543 I a score=35692.000000 s hg38.chr17_JH159146v1_alt 92505 11 + 278131 tagtttttggg s panTro4.chr17 66213111 11 - 82630442 tagtttttggg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24742760 11 - 73212453 tagtttttggg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47962465 11 - 81552678 tagtttttggg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53073288 11 + 80904711 taGTTTTTGGG i rheMac3.chr16 C 0 I 64 s macFas5.chr16 52595927 11 + 80997621 tagtttttggg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47640992 11 + 74645514 tagtttttggg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9909533 11 - 75148670 tagtttttggg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112769308 11 + 159171411 TAGTTTTGGGG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39328683 0 - 61074082 C e mm10.chr11 99499443 399 + 122082543 I a score=133820.000000 s hg38.chr17_JH159146v1_alt 92516 80 + 278131 aaacaggtggttttcaattacattaatgaa----tttttttgtTTGCAGATGATGCAATCTAtttttttaaattattatatttt s panTro4.chr17 66213122 80 - 82630442 aaacaggtggttttcaattacattaatgat----tttttttgtTTGCAGATGATGCCATCTAtttttttaaattattatatttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24742771 80 - 73212453 aaacaggtggttttcaattacattaatgaa----tttttttgtTTGCAGATGATGCAATCttttttttaaaattattatttttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47962476 80 - 81552678 aaacaggtggtttttgattacattaatgaa----tttttttgtTTGCAGATGATGCAATCTAtttttttaaattattatttttt i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52595938 76 + 80997621 aaacaggtggtttttgattacattaataag-----tttttGGTTTGCAGACGATGCAATCtttttt---taattattatttttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47641003 76 + 74645514 aaacaggtgttttttgattacattaataaa-----tttttggtttgCAGACGATgcaatctttttt---aaattattatttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9909544 79 - 75148670 aaacaggtggtttttgattacgttaataag-----tttttGGTTTGCAGATGATGCAATCttttttttaaaattattatttttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112769319 81 + 159171411 AACAGGGGGGTTCCTGATAACATTAAAAAAATTTTTTGTTTGTTTGCAAA-GATACAATCCTGTTT--AAAAAAAATATACTTT i calJac3.chr5 C 0 I 13620 e canFam3.chr9 39328683 0 - 61074082 C e mm10.chr11 99499443 399 + 122082543 I e rheMac3.chr16 53073299 64 + 80904711 I a score=46023.000000 s hg38.chr17_JH159146v1_alt 92596 21 + 278131 aagttctgggttacata---------tgca s panTro4.chr17 66213202 21 - 82630442 aagttctgggttacata---------tgca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24742851 30 - 73212453 aagttctggggtacatatgcaggatgtgca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47962556 30 - 81552678 aagttctggggtacatatgcaggatgtgca i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52596014 21 + 80997621 aagttctggggtacata---------tgca i macFas5.chr16 C 0 I 9 s papAnu2.chr16 47641079 21 + 74645514 aagttctggggtacata---------tgca i papAnu2.chr16 C 0 I 9 s chlSab2.chr16 9909623 21 - 75148670 aagttctggggtacata---------tgca i chlSab2.chr16 C 0 I 9 s calJac3.chr5 46403901 21 - 159171411 aagttctggggtacata---------tgca i calJac3.chr5 n 13620 C 0 e canFam3.chr9 39328683 0 - 61074082 C e mm10.chr11 99499443 399 + 122082543 I e rheMac3.chr16 53073299 64 + 80904711 I a score=2559381.000000 s hg38.chr17_JH159146v1_alt 92617 893 + 278131 --------ggtttgtt---acataggtaaacatgtgcca-ggtggtttgctgcacctatcaacccatcacttaggtattaagcccagcatgcaataggtcttttccctactgctctccccacccgccctcccctgaaaggcctctgtgtgtgttgttcccctctctgtgtccagatgttctcatggttctgctcccacttataagtgataacatgtggtgtttgattttctgttcctgtgttagtttgctgaagataatggcttccagctt-----------------------------------------------------catccatgtccctgcaaaggacatgatgttgttcctttttatggctgtatggtattccatgatgtgtatgtaccacattttctttatccagtgtattattgatgggcatttgggttgattccatgtctctgctattgtgagtagta--gctgcaa--------tgaacatacatgtgcatatatctttataatagaatgatttaatatttttttggcaggccaccaggtctgttggggtgatatccagtagcaggattgctgggtcagatggtctttccagttctaaatctttgaggaattgccacactgtctaccacaatggttgaactaatttacattcccaccaacaatgtaaaagcattcccatttctccacaacctcaccagtatctgttgtttcttgactttttaataatcaccattctgactggtgtgagttggtatc---ttgtggttttgatttgcatttacctaattatcagtgatgttgagccttttttcatatgataggttctttagtggtgatttctgagattttggtgcacccatcaccagagcagtgtacactgtactcaatgtgcagtcttttatccct-------cactccctcccactcctacctttaaagatccttcagcctctaGATCCAACAG s panTro4.chr17 66213223 894 - 82630442 --------ggtttgtt---acataggtaaacatgtgccatggtggtttgctgcacctatcaacccatcacttaggtattaagcccagcatgcaataggtcttttccctactgctctccccacccgccctcccctgaaaggcctctgtgtgtgttgttcccctctctgtgtccagatgttctcatggttctgctcccacttataagtgataacatgtggtgtttgattttctgttcctgtgttagtttgctgaagataatggcttccagctt-----------------------------------------------------catccatgtccctgcaaaggacatgatgttgttcctttttatggctgtatggtattccatgatgtgtatgtaccacattttctttatccagtgtattattgatgggcatttgggttgattccatgtctttgctattgtgagtagta--gctgcaa--------tgaacatacatgtgcatatatctttataatagaatgatttaatatttttttggcaggccaccaggcctgttggggtgatatccagtagcaggattgctgggtcagatggtctttccagttctaaatctttgaggaattgccacactgtctaccacaatggttgaactaatttacattcccaccaacaatgtaaaagcattcccatttatccacaacctcaccagtatctgttgtttcttgactttttaataatcaccattctgactggtgtgagttggtatc---ttgtggttttgatttgcatttacctaattatcaatgatgttgagccttttttcatatgataggttctttagtggtgatttctgagattttggtgcacccatcaccagagcagtgtacactgtacccaatgtgcagtcttttatccct-------cactccctcccactcctacctttaaagatccttcagcctctaGATCCAACAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24742881 894 - 73212453 --------ggtttgtt---acataggtaaacatgtgccatggtggtttgctgcacctatcaacccatcacctaggtattaagcccagcatgcaataggtcttttccctactgctctccccacccaccctcccctgaaaggcctctgtgtgtgttgttcccctccctgtgtccaggtgttttcgtggttctgctcccacttctaagtgataacatgtggtgtttggttttctgttcctgtgttagtctgctgaagataatggcttccagctt-----------------------------------------------------catccatgtccctgcaaaggacatgatgttgctcctttttatggctgtgtggtattccatgatgtatatgtaccacattttctttatccaatgtattattgatgggcatttgggttgattccatgtctttgctattgtgagtagta--gctgcaa--------tgaacatacacgtgcatatatctttataatagaatgatttaatatttttttggcatgccaccaggcctgttggggtgatacccagtagcaggattgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacaatggttgaactaatttacattcccaccaacaatgtaaaagcattcccattcctccacaacctcaccagtatctgttgtttcttgactttttaataatcaccattctgactggtgtgagatggtatc---tcgtggttttgatttgcatttccctaattatcagtgatgttgagcattttatcatatgataggttctttagtggtgatttctgagattttggtgcacccatcaccggagcagtgtacactgtacccagtgtgcagtcttttatctct-------cactccctcccactcctacctttaaggatccttcagcctctaGATCTAACAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47962586 901 - 81552678 --------ggtttgtt---acataggtaaacatgtgccatggtggtttgctgcacctatcaacccatcacctaggtattaagcccagcatgcaatagctcttttccctactactctccccacccaccttcccctgaaaggcctctctgtgtgttgttcccctccctgtgtccaggtgttctcatggttctgctcccacttataagtgataacatgcggtgtttggttttctgttcctgtgttagtttgctgaagatgatggcttccagctt-----------------------------------------------------catccatgtccctgcaaaggacatgatgttgttcctttttatggctgtatggtattccatgatgtatatgtaccacattttctttatctagtgtattattgatgggcatttgggttgattccatgtctttgctat--ggagtagtagtgctgcaatgactcactgaatatata---gcatatatctttataatagaatgatttaatacttttttggcatgccaccagggctgttggggtgatatccagtagtgggattgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacaatggttgaactaatttacattcccgccaacagtgtaaaagcattcccatttctccacaacctcaccagtatctattgtttcttgactttttaataatcgccattctgactggtgtgagatggtatctcattgtggttttgatttgcatttccctaattatcagtgatgttgagccttttttcatatgatagtttctttagt-gtgatttctgagattttggtgcacccatcaccggagcagtgtacactgtacccagtgtgcagtcttttatccct-------cactcactcccactcctgcctttaaggatccttcagcctctaGATCCAACAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53073363 877 + 80904711 --------ggtttgtt---acataggtaaacatatgccatagtggtttgctgcacctatcaacccatcacctagatattaagcccagcatgcaatagctcttttccctaatgctctccccacccaccctcccctaaaaggcttctgtgtatgttgttccccttcctgtgtccaagcgttctcattgttctgttctcacttataagtgataacatgcagtgtttggttttctgttcctgtgttagtttg-----------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---------------------------------------tatggctgtatagtattccatgatgtatatgtaccacattttcttgatccaatatattattgatgggcatttgggttgattccatgtatttgctattgtgagtagt---gctgcaa--------tgaacatacacgtgcatatatctttataatagaatgatttaata-ttttttggcatgccaccgggcctgtggggatgatacccagtagtgggtttgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacagtggttgaactaatttacattcccaccaacaatgtaaaagcatgtccatttctccacaacctcaccagtatctgttgtttcttggctttttaataattgccattctgattggtgtgagatggtatctcattgtggttttgatttgcatttccctaattatcagtgatgttaagccttttttcatatgatagggtctttagtggtgatttctgagattttggtgcacccatcacccgagcagtgtacactgtacccagtgtgcagccttttatccct-------caccccctcccactcctacctttaagGATCCTTCAG---------CCAACAG i rheMac3.chr16 I 64 C 0 s macFas5.chr16 52596044 886 + 80997621 --------ggtttgtt---acataggtaaacatgtgccatagtggtttgctgcacctatcaacccatcacctagatattaagcccagcatgcaatagctcttttccctaatgctctccccacccaccctcccctaaaaggcttctgtgtatgttgttccccttcctgtgtccaagcgttctcattgttctgttctcacttataagtgataacatgcagtgtttggttttctgttcctgtgttagtttgctgaggataatggcttccagctt-----------------------------------------------------catccatgtcctttcaaaggacatgatgttgttcctttttatggctgtatagtattccatgatgtatatgtaccacattttcttgatccaatatattattgatgggcatttgggttgattccatgtatttgctattgtgagtagt---gctgcaa--------tgaacatacacgtgcatatatctttataatagaatgatttaata-ttttttggcatgccaccgggcctgtggggatgatacccagtagtgggtttgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacagtggttgaactaatttacattcccaccaacaatgtaaaagcatgtccatttctccacaacctcaccagtatctgttgtttcttggctttttaataattgccattctgattggtgtgagatggtatctcattgtggttttgatttgcatttccctaattatcagtgatgttaagccttttttcatatgatagggtctttagtggtgatttctgagattttggtgcacccatcacccgagcagtgtacactgtacccagtgtgcagccttttatccct-------caccccctcccactcctacctttaagGATCCTTCAG---------CCAACAG i macFas5.chr16 I 9 C 0 s papAnu2.chr16 47641109 886 + 74645514 --------ggtttgtt---acataggtaaacatgtgccatagtggtttgctgcacctatcaacccatcacctagatattaagcccagcatgcaatagctcttttccctaatgctctccccacccaccctcccCTAAAACGCTTctgtgtatgttgttccccttcctgtgtccaagtgttctcattgttctgttctcacttataagtgataacatgcagtgtttggttttctgttcctgtgttagtttgctgaggataatggcttccagctt-----------------------------------------------------catccatgtcctttcaaaggacatgatgttgttcctttttgtggctgtatagtattccatgatgtatatgtaccacattttctttatccaatatattattgatgggcatttgggttgattccatgtatttgctattgtgagtagt---gctgcaa--------tgaacatacatgtgcatatatctttataatagaatgatttaata-ttttttggcATGCCACCGGGCCTGTGGGGATGATACCCAGTAGTgggtttgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacagtggttgaactaatttacattcccaccaacaatgtaaaagcatgtccatttctccacaacctcaccagtatctgttgtttcttggctttttaataattgccattctgattggtgtgagatggtatctcattgtggttttgatttgcatttccctaattatcagtgatgttaagccttttttcatatgatatggtctttagtggtgatttctgagattttagtgcacccatcacccgagcagtgtacactgtacccagtgtgcagccttttatccct-------caccccctcccactccTACCTTTAAGGATCCTTCAG---------CCAacag i papAnu2.chr16 I 9 C 0 s chlSab2.chr16 9909653 895 - 75148670 --------ggtttgtt---acttaggtaaacatgtgccatagtggtttgctgcacctatcaacccatcacctagatattaagcccagcatgcaatagctcttttccctaatgctctccccacccaccctcccctaaaaggcttctgtgtatgttgttccccttcctgtgtccaagtgttctcattgttctgttctcacttataggtgataacatgcagtgtttggttttctgttcctgtgttagtttgctgaggataatggcttccagctt-----------------------------------------------------catccatgtcctttcaaaggacatgatgttgttcctttttatggctgtataatattccatgatgtatatgtaccacattttctttatccaatatattattgatgggcatttgggttgattccatgtatttgctattgtgagtagt---gctgtaa--------tgaacatacatgtgcatatatctttataatagaatgatttaata-ttttttggcatgccgccaggcctgttgggatgatacccagtagtgggtttgctgggtcaaatggtctttccagttctaaatctttgaggaattgccacactgtctaccacaatggttgaactaatttacattcccaccaacaatgtaaaagcatgtcgatttctccacaacctcaccagtatctgttgtttcttggctttttaataattgccattctgattggtgtgagatggtatctcattgtggttttgatttgcatttccctaattatcactgatgttaagccttttttcatatgattgggtctttagtggtgatttctgagattttggtgcacccatcacccgaacagtgtacactgtacccaatgtgcagtcttttatccct-------catcccctcccactcctacctttaagGACACTTCAGCCTCTAGATCCAACAG i chlSab2.chr16 I 9 C 0 s calJac3.chr5 46403922 910 - 159171411 ggatgtgcagttttttttaacataggcaaacatgtgccatggtggtttgttgcatctgccaacccatcacctgggtattaagcccagcatgcattagctcttttccctaatgctctccccaccc-ccctccccaaataggcctcagtgtgtttttttcccctccctgtgtccaggtgttctcattgttctgctcccacttataagtaataacatgcagtgtttggttttctgtttctgtatcagcttgctgaagataatggcttccagctt-----------------------------------------------------catccatgtccctgcaaaggacatga-gttgtttctttttatggctgcatagtattctatggcatagatgtaccat-tttttttaatctagtgtatcattcgtaggcatttgtgtttatcctctgtctttgctattgtcagtagt---gctgcaa--------cgaacatacttgtgcatatatctttataatagaatgattt-atatttttttggcatgctaccaggcctgttggggtgatacccagtaatgggattgctgggtcaaatgctatttccagttctaaatctttgaggaattgccacactatctaccacaattgttgaactaatttacattcccaccaacaatgtaaaaacattcccatttcttcacaacctcaccagcatctgttgtttcttgactttttaataatcagcattctgactggtgtgagatggtatctcattgtggttttgattttcatttccctaattttcagtgatgttgagctttttttaatatgatacgttctttattggtgattttggagattttggtgcacccatcatgcaagtagtgtacactgtacccagtatgtagtcttttctccctcaccccccacccccccCAACTCCTACCTTTAAGGATCCTTCAGCCTCTAGATCCAACAG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39328683 0 - 61074082 C e mm10.chr11 99499443 399 + 122082543 I a score=71639.000000 s hg38.chr17_JH159146v1_alt 93510 23 + 278131 TTTAGTTT-TATTTTGTTTGGCCT s panTro4.chr17 66214117 23 - 82630442 TTTCGTTT-TATTTTGTTTGGCCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24743775 24 - 73212453 TTTAGTTTCTATTTTGTTTGGCCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47963487 23 - 81552678 TTTAGTTT-TATTTTGTTTGGCCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53074240 23 + 80904711 TTTAGTTT-TATTTTGTTTGGTCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52596930 23 + 80997621 TTTAGTTT-TATTTTGTTTGGTCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47641995 23 + 74645514 tttagttt-tattttgtttggtct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9910548 23 - 75148670 TTTAGTTT-TATTTTGTTTGGTCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46404832 23 - 159171411 TTTAGTTT-TATTTTGTTTGGTCT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39328683 20 - 61074082 TTTTGTTT-TGTGTTTTGTAG--- i canFam3.chr9 C 0 C 0 e mm10.chr11 99499443 399 + 122082543 I a score=3393943.000000 s hg38.chr17_JH159146v1_alt 93533 942 + 278131 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-GGGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACCCATTTATACCTAGAATTCAGAGTTGCCAGTGCTC-A-GGAGACAAAGCAATTTAGCACCATCACCAGTAGAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATAGCTGCGATGAAGTCATCATCATCTGAGTGACATACTTATCATTCAGTACCTTGGTAT-AAGCCTGAGAAAAATGGGTTGGCCTAGCCCATCATACTGGTAGTTGATC----CTCATTTATCATTATCACCTTCAGAGAAGG----AGG-GCACCTCCTCCCTCCTTCCAGCTTCCTTCCTTTTCCAGCTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTTTCAGCTAGATAACTTCTTTCAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGATCCTTAAATCCTTTTGCACTGCCTCTG---TGC-AAAAGGCCTG-TGCAGTGATTTCATTCCCTTAACACAACAGCAGGAAAAACAGATCCCTGCAAATGGGTGGGAAG---TGCTGTTGCAAAGCTGAAACGACTTCACTCTTCT-TTTTCTCCTTATGATTATCTTAATCTGATGGACATGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTTGTTAGTGATCCTGGAATTAACCTGCG-TGTTAGCTTTAGTCCTCGCTGGGCGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAGCTGTGGTGTTGGTA-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGT----CTTGTCCTTATAGG-TTTTACCTTTAGCTCAGTGTGGTTCATGTTGC-GGCAGGGCAAGGGTATGCAAGGCTGTTGGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTGATAGTTGTTGCTGCCTGAAACTCAA s panTro4.chr17 66214140 943 - 82630442 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-GGGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACCCATTTATACCTGGAATTCAGAGTTGCCAGTGCTC-A-GGAGACAAAGCAATTTAGCACCATCACCAGTAGAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATAGCTGCGATGAAGTCATCATCATCTGAGTGATATACTTATCATTCAGTACCTTGGTAT-AAGCCTGAGAAGAATGGGTTGGCCTAGCCCATCATACTGGTAGTTGACC----CTCATTTATCATTATGACCTTCAGAGAAGG----AGG-TCACCTCCTCCCTCCTTCCAGCTTCCTTCCTTTTCCAGCTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTTTCAGCTAGATAACTTCTTTCAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGACCCTTAAATCCTTTTGCACTGCCTCTG---TGC-AAAAGGCCTGTTGCAGTGATTTCATTCCCTTAACACAACAGCAGGAAAAACAGATCCCCACAAATGGGTGGGAAG---TGCTGTTGCAAAGCCGAAACGACTTTACTCTTCT-TTTTCTCCTTATGATTATCTTAATCTGATGGACATGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTTGTTAGTGATCCTGGAATTAACCTGCC-TGTTAGCTTTAGTCCTCGCTGGGCGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTA-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGT----CTTGTCCTTATAGG-TTTTACCTTTAGCCCAGTGTGGTTCATGTTGC-GGCAGGGCAAGAGTATGCAAGGCTGTTGGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACATGATAGTTGTTGCTGCCTGAAACTCAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24743799 946 - 73212453 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-GGGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACCCATTTATACCTGGAATTCAGAGTTGCCAGTGCTC-A-GGAGACATAGCAATTTAGCACCATCACCAGTATAG-AA--------ACC---------TGGTTGTCAAGATCTTTTCACATAGCTGCGATGAAGTCATCATCATCTGAGTGACATACTTATCATTCAGTACCTTGGTGT-AAGCCTGAGAAGAATGGGTTGGCCTAGCCCATCATACTGGTAGTTGACC----CTCATTTATCATTATCACCTTCAGAGAAGG----AGG-GCACCTCCTCCCTCCTTCCAGCTTCCTTCCTTTTCCAGCTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTTTCAGCTAGACAACTTCTTTCAAAGGACTGCCAGAACACACTGACTTAAGCCTGGTTTCAGAAAGATCCTTAAGTCCTTTTGCACTGCCTCTG---TGC-AAAAGGCCTGTTGCGGTGATTTCATTCCCTTAACACAACAGCAGAAAAAACAGATCCCCACTAATGGGTGGGAAGTGCTGCTGCTGCAAAGCTGAAACAATTTCACTCTTCT-TTTTCTCCTTATTATCATGTTAATCTGATGGACATGATAGGTAATCAAATAAATCCTTTACACAAAGACTGTTGTTGTTAGTGATCCTGGAATTAACCTGCG-TGTTAACTTTAGTCCTCACTGGGCATTAGTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTT-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGT----CTTGTCCTTATAGG-TTTTACCTTTAGCCCAGTGTGGTTCATGTTGCGGGCAGGGCAAGAGTATGCAAGGCTGTTGGAAGGTCTTTGCTC-----------C-CAGCATTCTTCCCCACTTGATAGTTGTTGCCGCCTGAAACTCAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47963510 939 - 81552678 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-GGGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACTCATTTATACCTGGAATTCAGAGTTGCCAGTGCTC-A-GGAGACATAGCAATTTAGCACCATCACCAGTAGAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATAGCTGCGATGAAGTCATCATCATCTGAGTGACATACTTATCATTCAGTACCTTGGTAT-AAGCCTGAGAAGAATGGGTTGGCCTAGCCCATCATACTGGTAGTTGACC----CTCATTTATCATTATTACCTTCAGAGAAGG----AGG-GCACCTCCT-CCTCCTTCCAGCTTCCTTCCTTTTCCAGCTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTTTCAGCTAGATAACTTCTTTCAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAAA-CCTTAAGTCCTTTTGCACTGCCTCTG---TGC-AAAAGGCCTATTGCGGTGATTTCATTCCCTTAACACAACAGCAGAAAAAACAGATCCCCACTAATGGGTGGGAAG---TGCTGCTGCAGAGCTGAAACAATTTCGCTCTTCT-TTTTCTCCTTATTATCATCTTAATCTGATGGACATGATACGTAATCAAATAAATCCTTTACAGAAAGACC---GTTGTTAATGATCCTGGAATTAACCTGCGCTGTTAGCTTTAGTCCTCACTGGGCATTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTT-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGT----CTTGTCCTTATAGG-TTTTACCTTTAGCCCAGTGTGGTTCATGTTGC-AGCAGGGCAAGAGTATGCAAGGCTGTTAGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTCATAGTTGTTGCCACCTGAAACTCAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53074263 942 + 80904711 TTCAGTATTCTGTCAAATGACACAACCTGTTATGTGAGGG--TCTGCTCTG-TGGTGCTTA----------------------------------GGAGCGGTTACTGATCTTTACCCATTTATACCTGGAATTCAGAGTTACCAGTACTC-G-GGAGACACAGCAATTTAGCACCATCATCAGTAAAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATGGCTGTGATGAAGTTATCATCATCTGAGTGACATACTTATTATTCAGTACCTTGGTAT-AAGCCTGAAAAGAATGGGTTGGCCTAGCCCATCATACTGGGAGTTAACT----CTCATTTACCATTATCTCCTTCAGAGAAGG----AGG-GTACCTCCTCCCTCCTTCCAG----CTTCCTTTTCCAGTTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTGTCAGCTAGAAAACTTCTTTGAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGATCCTTAAGTCCTTTTATACCGCCTCTG---TGC-AAAAGGCCTGTTGCAGTGATTTCATTCACTTAGCATAACAGCAGGAAAAACAGATCCCCACTAATGGGTGGGAAG---TGCTGCTGCAAAACTGAAATGATTTCACTCTTCT-TTTTCTCCTTATTATCATCTTAATCTAATGGACTTGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTCATTAATGATCCTGGAATTAAACTGCA-TGTTAGCTTTAGTCCTCACTGGGCGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTT-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGTACCATTTGCCCTTATAAG-TTTTACCTTTAGCCCAGTG-GGTTCATGTTGC-GGTAGGGCAAGTGTATGCAAGACTGTCAGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTGACAGTTGTTGCCACCTGAAACTCAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52596953 942 + 80997621 TTCAGTATTCTGTCAAATGACACAACCTGTTATGTGAGGG--TCTGCTCTG-TGGTGCTTA----------------------------------GGAGCGGTTACTGATCTTTACCCATTTATACCTGGAATTCAGAGTTACCAGTACTC-G-GGAGACACAGCAATTTAGCACCATCATCAGTAAAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATGGCTGTGATGAAGTTATCATCATCTGAGTGACATACTTATTATTCAGTACCTTGGTAT-AAGCCTGAAAAGAATGGGTTGGCCTAGCCCATCATACTGGGAGTGGACT----CTCATTTACCATTATCTCCTTCAGAGAAGG----AGG-GTACCTCCTCCCTCCTTCCAG----CTTCCTTTTCCAGTTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTGTCAGCTAGAAAACTTCTTTGAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGATCCTTAAGTCCTTTTATACCGCCTCTG---TGC-AAAAGGCCTGTTGCAGTGATTTCATTCACTTAGCATAACAGCAGGAAAAACAGATCCCCACTAATGGGTGGGAAG---TGCTGCTGCAAAACTGAAATGATTTCACTCTTCT-TTTTCTCCTTATTATCATCTTAATCTAATGGACTTGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTCATTAATGATCCTGGAATTAAACTGCG-TGTTAGCTTTAGTCCTCACTGGGCGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTT-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGTACCATTTGCCCTTATAAG-TTTTACCTTTAGCCCAGTG-GGTTCATGTTGC-GGTAGGGCAAGTGTATGCAAGACTGTCAGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTGACAGTTGTTGCCACCTGAAACTCAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47642018 942 + 74645514 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-TGGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACCCGTTTATACCTGGAATTCAGAGTTACCAGTACTC-G-GGAGACACAGCAATTTAGCACCATCATCAGTAAAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATGGCTGTGATGAAGTTATCATCATCTGAGTGACATACTTATTATTCAGTACCTTGGTAT-AAGCCTGAGAAGAATGGGTTGGCCTAGCCCATCATACTGGGAGTTGACT----CTCATTTACCATTATCTCCTTCAGAGGAGG----AGg-gcacctcctccctccttccac----cttccTTTTCCAGTTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTGTCAGCTAGAAAACTTCTTTGAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGATCCTTAAGTCCTTTTATACCGCCTCTG---TGC-AAAAGGCCTGTTGCGGTGATttcattcacttagcataacagcAGGAAAAACAGATCCCCACTAATGGGTGGGAAG---TGCTGCTGCAAAGCTGAAATGatttcactcttct-ttttctccttattaTCATCTTAATCTAATGGACTTGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTCATTAATGATCCTGGAATTAACCTGCG-TGTTAGCTTTAGTCCTCACTGGGCGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGTTGGTT-GCTGAAACATCATCATCTCATGCAATTTG-CTGAAGT----CTTGCCCTTATAGG-TTTTACCTTTAGCCCAGTGTGGTTCATGTTGA-GGCAGGGCAAGTGTATGCAAGACTGTCAGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTGACAGTTGTTGCCACCTGAAACTCAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9910571 972 - 75148670 TTCAGTATTCTGTCAAATGACACAACCTATTATGTGAGGG--TCTGCTCTG-TGGTGCTTAGGAGCAGTTACTGATCTTTATCTGTTTATACCTGGGAGCAGTTACTGATCTTTACCTGTTTATACCTGGAATTCAGAGTTACCAGTGCTC-G-GGAGACATAGCAATTTAGCACCATCATCAGTAAAGAAA--------ACC---------TGGTTGTCAAGATCTTTTCACATGGCTGTGATGAAGTTATCATCATCTGAGTGGCATACTTATTATTCAGTACCTTGGTAT-AAGCCTGAGAAGAATGGGTTGGCCTAGCCCATCATACTGGGAGTTGACT----CTCATTTACCATTATCTCCTTCAGAGAAGG----AGG-GCACCTCCTCCCTCCTTCCAG----CTTCCTTTTCCAGTTGACACCAAACCTTTCTGAGG----AGGCAAGTGATGTGTCAGCTAGATAACTTCTTTGAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGAAAGATCCTTAAGTCCTTTTATACCGCCTCTG---TGC--AAAGGCCTGTTGAGGTGATTTCATTCACTTAGCATAACAGCAGGAAAAACAGATCCCCACTGATGGGTGGGAAG---TGCTGCTGCAAAGCTGAAATGATTTCACTCTTCT-TTTTCTCCTTATTATCATCTGAATCTGATGGACATGATAGGTAATCAAATAAATCCTTTACACAAAGACCGTTGTCATTAATGATCCTGGAATTAACCTGTG-TGTTAGCTTTAGTCCTCACTGGGTGTTACTTTCTT------TTGCCTTAGGAGGAGATGTTTTGAGTTAACTGTGGTGGTGGTT-GCTGAAA---CATCATCTCATGCAATTTG-CTGAAGT----CTTGTCCTTATAGG-TTTTACCTTTAGCCCAGTGTGGTTCATGTTGC-GGCAGGGCAAGTGTATGCAAGACTGTCAGAAGGTCCTTGCTC-----------C-CAGCATTCTTCCCCACTTGACAGTTGTTGCCACCTGAAACTCAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46404855 926 - 159171411 TTCAGCATTCTGTCAAACAACACAACCTATTATGTGAGGG--TCTGCTCTG--GGTGCTTA----------------------------------GGAGCAGTTACTGATCTTTACCCATTTATACCTTGAATTCAGAGTTATCAGTGCTCAG-GGAGACACTGCAATTTGGCACCATCAACAATAGAGAAA--------ATC---------TGCTTGTCAAGATCTTCTCACATGGCTGCGATGAAGTCATCATCATCTGAGTGACATATTTATCATTCAGTACCTTGGTAT-AAGTCTGAGAAGAATGGATTTGTCTAGTCCATCATACTGGGAGTTGACC----CTCATTTATCATCATCACCTTCAGAGGAGG----AGG-CCACCTCCTCCCTCCTTCCGA----CTTCCTTTTCCAACTGACACCAAGTCTTTCTGAGG----AGGCAAGTGACATTTCAGCTAGATAACTTCTTTGAAAGGACTGCCAGAACACTCTGACTTAAGCCTGGTTTTAGGAAGATCCTTAAGACCTTTTGTGTGGCCTCTGACTTGCCGCCAGGCCCAGTGCAGTGATTTCATCTATTTAAGGTGACAGCAGAAAAGACAGATCTCCACAAACAGGTTGGAAG---TGCTGCTGCAAAGCTGAAATGGTCT-----TCTT-TTTTCTCTCTATTATCATCTTAATCAGATGGACATCACAGGTAATCAAATAAATCTTTTATACAAAGACCATTGTCATGAATAATTCTGGAATTAACCTACA-CATCAGCTTCAGTTTTTGCTGGGCGTTATTTTCTT------TTGCCTTAGAAGGAGACATTCTGAGTTAACTGTGGCATTGGTT-GCTGAAG---CATCATCTTATGCAATTTG-CTGAAGT----CTGGTCCTGATAGG-TTTTGCCCTTAGCCTGGTGT-------------GGCAGGGCCAGTGTACAAAAGGCTGCCAGAAGGTCCTTGCTC-----------C-CAGCGTTCTTCCCCACTTGACAGTAGTTGCCACCTGAAACTCAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99499842 910 + 122082543 TTTTGTGTTC--TCCGGTGATCTGGCCTGCCACATAACGGTCTCTGGTCCT-GGGTGCTCA----------------------------------GCA------------CTTTA-TCATTTAC--------------GATTCCAGTTTTC-ATGAAGATACAGCAATTTAGTGTCATCACCCCCACAAAAG--------GCCATCCTTTCTTGGTTGTCAAAGCCTTGTCACCTCATGAAGGCTTTGTCACCATCATCTGGGCCACATGTCTGTCATTCCATACATGGGTCC-ATGCCAAGGAGGAGTGGTCTGGCCTATCAGATGATACTAAGAATTGCATGTTGTTCCTTTGTCCTTTTGGTCTACAAAAGAAGGCTTAGG-TCACCC-------------------TTCTCCTTCTCGGATGACACCAAACCTTTCTGAGATGCTAGGCAA---AGGTCTCACCTGTGTAAGTTCTTTGAGAGGAGTGCTGAGATGCTGTGCTGTAAGCCTGGCTTTAGAGACATC---GAGTCCTTTTGTGCTACTTTGGCATAGT-GCCAGGCCTATTGAGGTGATTGTGTTCAGTGCAGGTGAC-GTAAAAACAATGGAAGTCCACCAGTGGGTGGGGTG---TGCTCTCGCAAGACCGAAGTGATTTCACTCTCCTCTTTTCTCTTCATTAGCACCTTAATCCAGCAAGTACGGCAGCTAATCACCCAGATCTCTTGTAGAAAGGCAGTTGCCATTAATAATCCT---------------TG--AGCTTCAACACGTATTGGGTGTTACTTTCTTTTTCTATTGCCACATAAGGAGACATTCTGAG-CATCCACCGTGTTGGTTGGCTGAGG---CATTACCTCATGCAATAGGCCTAAAAT----CTTGCTTTCACAGGTTTTTACCTTTAGCCCAGAA--GTTCTTGTTGT-GACAAGGCCAGTGGGAGCTGGG------GAGAGTTTCTGCTTGTCTCCACATAC-CAGAATCCATCCCTAGTTTATAGTC-TGGGGACTTGAAATGCAG i mm10.chr11 I 399 C 0 s canFam3.chr9 39328703 940 - 61074082 -TCACTACTTTG-CAAGTGATCCAACCTATTATGTGAGGG--TCTGTGCTGGGGGTGCTTA----------------------------------GGAGCAGTTACTGATC-TTATCCATTTGTACCTTGAGTTCAGAGTTGCCAGATCTCAG-GGAGACATGACAGTTTAGCATTTTCACCAACAGAAAAGTCACATTTTCC---------TGGTTGTTGGGATCTTTTCACTTGGTAGCAATGAAGTCATCCTCATTTGAGTGACACATTTGTCATTCACTCTGTCATTGTGGAGCTTGGGGAGAATGGATTGGCCTATCCCATGATACTGGGAATTTAGT----CTTATTCATTACTATCACTTTCAAAAAAGG----AGGCTCATCCCCTCCCTTTTCCTAG----TTTCCTTATCCACTTGCCACCGAACCTTTCTGAGA----AGGTAAGAGATATTCTAGCCAGATAGCTTCTTTGAAAGGAGTGCCAGGACAATCTGGGTTAAGCCTGGCTTTAGAAAGATCCCTGTGTCCTTTTGCACTACCTTTGGCATGCCACCAGGTCTGTGGAGGTGATTTTGTTCATTTGATGCTGCAG-AAGACAAACAGAT-------GGTGGGTGGGGAG---TGCTAGCGCAAGACTGAAATGATTTCA----TTT-TTTCTTCCTTTTTATCGTCTTAATCTGATGAACATGATAGGTAATCAAATAAATCCCTTATACAAAGGTTGTTGTCATTGATAATCCTTGAATTAACCTGCA-CATTAGCTTCAGTGCTCGTAGGGCGTTACTTTCTT------GTGCCATTTAAGGAGACATTTGAAG-TATCTGTGGTGTTGGTTTGCTGAGA---CATCCTGTCATGCAGTTTG-CTGAAGT----CT-GTCCTGGTAGC-TTTTACCTCTAGTCCAGTGTGGTTCATGTTGT-GGCAGGGTCAGTGTAtggaggactgtggtaaggcctttgcac-----------tgcaggattctttcccacttgacagttgttggtgcctgaaatccaa i canFam3.chr9 C 0 C 0 a score=89027.000000 s hg38.chr17_JH159146v1_alt 94475 33 + 278131 TCATGTATTTGTTTGGTTCACTCAAATATTGCT s panTro4.chr17 66215083 33 - 82630442 TCATGTATTTGTTTGGTTCACTCAAATATTGCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744745 33 - 73212453 CCATGTATTTGTTTGGTTCACTCAAATATTACT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964449 33 - 81552678 CCATGTATTTGTTTGGTTCACTCAAATATTGCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53075205 33 + 80904711 CCATGTATTTGTTTGGTTCACCCAAATATTGCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52597895 33 + 80997621 CCATGTATTTGTTTGGTTCACCCAAATATTGCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47642960 33 + 74645514 CCATGTATTTGTTTGGTTCACCCAAATAttgct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9911543 33 - 75148670 CCATGTATTTGTTTGGTTCACCCAAATATTGCT i chlSab2.chr16 C 0 I 149 s calJac3.chr5 46405781 12 - 159171411 CCATGTATTTGT--------------------- i calJac3.chr5 C 0 C 0 s mm10.chr11 99500752 33 + 122082543 TCATTTATTTGACTGACTCCACAAAACTTCACC i mm10.chr11 C 0 C 0 e canFam3.chr9 39329643 0 - 61074082 C a score=1492.000000 s hg38.chr17_JH159146v1_alt 94508 2 + 278131 GC s panTro4.chr17 66215116 2 - 82630442 GC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744778 2 - 73212453 TC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964482 2 - 81552678 TC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53075238 2 + 80904711 Tc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52597928 2 + 80997621 Tc i macFas5.chr16 C 0 I 1055 s papAnu2.chr16 47642993 2 + 74645514 cc i papAnu2.chr16 C 0 I 53 s mm10.chr11 99500785 2 + 122082543 Ac i mm10.chr11 C 0 C 0 e canFam3.chr9 39329643 0 - 61074082 C e calJac3.chr5 46405793 0 - 159171411 C e chlSab2.chr16 9911576 149 - 75148670 I a score=13989.000000 s hg38.chr17_JH159146v1_alt 94510 6 + 278131 TTCTTC s panTro4.chr17 66215118 6 - 82630442 TTCTTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744780 6 - 73212453 TTCTTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964484 6 - 81552678 TTCTTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53075240 6 + 80904711 tccttc i rheMac3.chr16 C 0 I 938 s macFas5.chr16 52598985 6 + 80997621 tccttc i macFas5.chr16 I 1055 C 0 s papAnu2.chr16 47643048 6 + 74645514 tccttc i papAnu2.chr16 I 53 I 6 s mm10.chr11 99500787 6 + 122082543 ttcttc i mm10.chr11 C 0 C 0 e canFam3.chr9 39329643 0 - 61074082 C e calJac3.chr5 46405793 0 - 159171411 C e chlSab2.chr16 9911576 149 - 75148670 I a score=39427.000000 s hg38.chr17_JH159146v1_alt 94516 35 + 278131 TTCGTttttctttctttctttt------ttttctttttctt s panTro4.chr17 66215124 35 - 82630442 TTCATttttctttctttctttt------ttttctttttctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744786 41 - 73212453 TTCTTTTTTCTTTAtttctttttttttcttttttttttttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964490 35 - 81552678 TTCGTtttcctttctttttttt------ctttttttttttt i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52598991 35 + 80997621 cttccttcTCTCTCTCTCtttt------tctttctttcttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47643060 35 + 74645514 tttctctctctctctctctttt------tctttctttcttt i papAnu2.chr16 I 6 C 0 s calJac3.chr5 46405793 25 - 159171411 ----------TCTCTTTCGTat------tttttttttaata i calJac3.chr5 C 0 C 0 s mm10.chr11 99500793 35 + 122082543 tccgtctccttctcctccatct------tcttcttcctttt i mm10.chr11 C 0 I 236 e canFam3.chr9 39329643 0 - 61074082 C e chlSab2.chr16 9911576 149 - 75148670 I e rheMac3.chr16 53075246 938 + 80904711 I a score=-2732.000000 s hg38.chr17_JH159146v1_alt 94551 4 + 278131 gaga s panTro4.chr17 66215159 4 - 82630442 gaga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744827 4 - 73212453 gaga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964525 4 - 81552678 gaga i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52599026 1 + 80997621 c--- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47643095 1 + 74645514 c--- i papAnu2.chr16 C 0 C 0 s calJac3.chr5 46405818 4 - 159171411 aaga i calJac3.chr5 C 0 C 0 e canFam3.chr9 39329643 0 - 61074082 C e mm10.chr11 99500828 236 + 122082543 I e chlSab2.chr16 9911576 149 - 75148670 I e rheMac3.chr16 53075246 938 + 80904711 I a score=74356.000000 s hg38.chr17_JH159146v1_alt 94555 28 + 278131 cagagtcttgatctgttgcccaggctgg s panTro4.chr17 66215163 28 - 82630442 cagagtcttgatctgttgcccaggctgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744831 28 - 73212453 cacagtcttgatctgttgcccaggctgg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964529 26 - 81552678 c--agtcttgatctgttgcccagactgg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076184 28 + 80904711 cagagtcttgatctgttgcccaggctgg i rheMac3.chr16 I 938 C 0 s macFas5.chr16 52599027 28 + 80997621 cagagtcttgatctgttgcccaggctgg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47643096 28 + 74645514 cagagtcttgatctgttgcccaggctga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9911725 28 - 75148670 cagagtcttcatctgttgcccagactgg i chlSab2.chr16 I 149 C 0 s calJac3.chr5 46405822 28 - 159171411 cagggtttcaccatgttggtcaggctgg i calJac3.chr5 C 0 I 36 e canFam3.chr9 39329643 0 - 61074082 C e mm10.chr11 99500828 236 + 122082543 I a score=28861.000000 s hg38.chr17_JH159146v1_alt 94583 12 + 278131 agtgcactggcg s panTro4.chr17 66215191 12 - 82630442 agtgcactggcg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744859 12 - 73212453 agtgcactggtg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964555 12 - 81552678 agtgcactggtg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076212 12 + 80904711 agtgcactggca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52599055 12 + 80997621 agtgcactggca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47643124 12 + 74645514 agtgcactggca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9911753 12 - 75148670 agtgcactggca i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39329643 0 - 61074082 C e mm10.chr11 99500828 236 + 122082543 I e calJac3.chr5 46405850 36 - 159171411 I a score=9675.000000 s hg38.chr17_JH159146v1_alt 94595 6 + 278131 ccatct s panTro4.chr17 66215203 6 - 82630442 ccatct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744871 6 - 73212453 cgatct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964567 6 - 81552678 tgacct i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076224 6 + 80904711 tggtct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52599067 6 + 80997621 tggtct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47643136 6 + 74645514 tggtct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9911765 6 - 75148670 tgatct i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39329643 6 - 61074082 ccattt i canFam3.chr9 C 0 C 0 e mm10.chr11 99500828 236 + 122082543 I e calJac3.chr5 46405850 36 - 159171411 I a score=78411.000000 s hg38.chr17_JH159146v1_alt 94601 32 + 278131 cagctcactgcagtctccaccccccaggttca s panTro4.chr17 66215209 32 - 82630442 cagctcactgcagtctccaccccccaggttca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744877 32 - 73212453 cagctcactgcagtctccgcctgccaggttca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964573 32 - 81552678 cggctcactgcagtctccaccccacaggttca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076230 32 + 80904711 cagctcactgtagtctccgccccccaggttca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52599073 32 + 80997621 cagctcactgtagtctccgccccccaggttca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47643142 32 + 74645514 cagctcactgcagtctccgccccccaggttca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9911771 32 - 75148670 cagctcactgcagtctccgccccccaggttca i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39329649 0 - 61074082 C e mm10.chr11 99500828 236 + 122082543 I e calJac3.chr5 46405850 36 - 159171411 I a score=132105.000000 s hg38.chr17_JH159146v1_alt 94633 47 + 278131 agcctcccgagcagctgggattacaggcgcccaccaccatgccctgc s panTro4.chr17 66215241 47 - 82630442 agcctcctgagcagctgggattacaggcgcccaccaccatgccctgc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744909 47 - 73212453 agcctcctgagtagctgggattacaggtgcccaccaccatgccctgc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964605 47 - 81552678 agcctcctgagtagctgggattacaggcgcccaccaccatgccctgc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076262 47 + 80904711 agcctctcaagtagctgggattacaggcacctgccaccatgccctgc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52599105 47 + 80997621 agcctctcaagtagctgggattacaggcacctgccaccatgccctgc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47643174 47 + 74645514 agcctctcaagtagctgggattacaggcacctgccaccatgccctgc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9911803 47 - 75148670 agcctctcaagtagctgggattacaggcgcctgccaccatgccctgc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46405886 46 - 159171411 ggcctccaaagt-gcttggattacaggcgtgagccaccatgcccagc i calJac3.chr5 I 36 T 18020 e canFam3.chr9 39329649 0 - 61074082 C e mm10.chr11 99500828 236 + 122082543 I a score=163535.000000 s hg38.chr17_JH159146v1_alt 94680 75 + 278131 ta-ttttttgtattttttgtagagatggggtttcaccatgttggccaggctggtctcaaactcctgaccttgaaag s panTro4.chr17 66215288 74 - 82630442 ta-ttttttgta-gttttggagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcgaaag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24744956 76 - 73212453 tatttttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcgaatg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964652 75 - 81552678 ta-ttttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaaatg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076309 75 + 80904711 ta-ttttgtgtatttttagtcaagatggggtttcaccatgttggccaggctgctctggaactcctgaccttgaatg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52599152 75 + 80997621 ta-ttttgtgtatttttagtcaagatggggtttcaccatgttggccaggctgctctggaactcctgacctcgaatg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47643221 75 + 74645514 ta-ttttgtgtatttttagtcaagatggggtttcaccatgttggccaggctggtctggaagtcctgacctcgaatg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9911850 75 - 75148670 ta-ttttttgtatttttagttgagatggggtttcaccatgttggccaggctggtctggaactcctgacctcgaatg i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39329649 0 - 61074082 C e mm10.chr11 99500828 236 + 122082543 I e calJac3.chr5 46405932 18020 - 159171411 T a score=63102.000000 s hg38.chr17_JH159146v1_alt 94755 26 + 278131 atctgcttggctcagcttcccaaagt s panTro4.chr17 66215362 26 - 82630442 atctgcttggctcagcctcccaaagt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24745032 26 - 73212453 atctgcttggctcagcctcccaaaat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964727 26 - 81552678 atctgcctggctcagcctcccaaagt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076384 26 + 80904711 atctgcctggctcagcctcttaaagt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52599227 26 + 80997621 atctgcctggctcagcctcttaaagt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47643296 26 + 74645514 atctgcctggctcggcctcttaaagt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9911925 26 - 75148670 atctgcctggctcagcctcccaaagt i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39329649 19 - 61074082 atttgtttggttcA-----CCAAA-- i canFam3.chr9 C 0 C 0 e mm10.chr11 99500828 236 + 122082543 I e calJac3.chr5 46405932 18020 - 159171411 T a score=1072546.000000 s hg38.chr17_JH159146v1_alt 94781 415 + 278131 gttgagattacag-----gcgcgagccactgcatgcggccAAT-GTTGCTTCTTATTCAGAAACAAA-----------CCTTAATACATT-GTTCACACAAAAA---ACCCATTGTTTGCCTTttcattcattgaacaagtatttactgaatgcctaccctgtg----tggagcagagaaggtgaggaggagggcagggtgagaggacgctgg-----------------------------------------------tggcgcacagg------------acacagggtcgttctgggctttctcagctctgctgagtattttgatcttcaacacaagagatgt----ggaaaatgaagattttaagcaggggagtactgcactgtgatc----------ttcaaaaagatcaccctagctgtctcatggagaatgaatgagggtgagagtgaagtggtggggat-ggccaggaagggactgcccctgtccagaggagagacaat--ggaagt s panTro4.chr17 66215388 415 - 82630442 gttgagattacag-----gcgtgagccactgcatgcggccAAT-GTTGCTTCTTATTCAGAAACAAA-----------CCTTAATACATT-GTTCACACAAAAA---ACCCATTGTTTGCCTTttcattcattgaacaagtatttactgaatgcctaccctgtg----tggagcagagagggtgaggaggagggcagggtgagaggacactgg-----------------------------------------------tggcgcactgg------------acacggggtcgttccgggctttctcagctctgctgagtattttgatcttcaacacaagagatgt----ggaaaatgaagattttaagcaggggagtactgcactgtgatc----------ttcaaaaagatcaccctagctgtctcatggagaatgaatgagggtgagagtgaagtggtggggat-ggccaggaagggactgcccctgtccagaagagagacaat--ggaagt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24745058 415 - 73212453 gttgagattacag-----gcacgagccaccgcatctggccAAT-GTTGCTTCTTATTCAGAAACAAA-----------CCTTAATACATT-GTTCACACAAAAA---ACCCATTGTTTGCCTTttcattgattgaacaagtatttactgaatgcctaccctgtg----tggagcagagagggtgaggaggagggcagggtgagaggacgctgg-----------------------------------------------tgacgcacagg------------acacggggtcgttctgggctttctcaggtctgctgagtattttgatcttcaacacaagagatgt----ggaaaatgaagattttaagcaggggagtactgcactgtgatc----------ttcaaaaagatcaccctagctgtctcatggagaatgaatgagggtgagagtgaagtggtggggat-ggctaggaagggactgcacctgtccacaagagagacaat--ggaagt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47964753 415 - 81552678 gttgagattacag-----gcgtgagccaccgcatccggccAAT-GTTGCTTCTTATTCAGAAACAAA-----------CCTTAATACGTT-GTTCACACAAAAA---ACCCATTGTTTGCCTTttcattcattgaacaagtatttagtgaatgcctacCCtgag----tggagcagagaaggtgaggaggagggcagggtgagaggacgccgg-----------------------------------------------tgacgcacagg------------actcggggtcgttctgggctttctcagctctgctgagtattttggtcttcaacacaagagatgt----ggaaaatgaagattttaggcaggggagtactgcactgtgatc----------ttcaaaaagatccccctagctgtctcatggagaatgaatgagggtgagagtgaaggggtggggat-ggctaggaaaggacagcccctgtccagaagagagacgat--ggaagt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076410 418 + 80904711 attgggattacag-----gcacgagccaccgcatcgggccAATAATTGCTTCTTATTCAAAAACAAA-----------CCTTAATACATT-GTTCACATAAAAA---ACACATTGTTTGCCTTttcattcattgaacaagtatttattgaatgcctacCCTGCA----tggagcagagagggagaggaggagagcagggtgagaggatgctgg-----------------------------------------------tgacgcacagg------------acacggggttgttctgggctttctcacctctgctgagtattttgatcttcgacacaagagatgt----ggaaaatgaagactttaagcaggggagtactgcactgtgatc----------ttcgaaaagatcaccctagctgtcttatggagaatgaatgagggtgagagtgaaggggtggggat-ggctaggaagggactgcctctgtccagaagagaaacgatggGGAGGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52599253 418 + 80997621 attgggattacag-----gcacgagccaccgcatcgggccAATAATTGCTTCTTATTCAAAAACAAA-----------CCTTAATACATT-GTTCACATAAAAA---ACACATTGTTTGCCTTttcattcattgaacaagtatttattgaatgcctaccctgcg----tggagcagagagggagaggaggagagcagggtgagaggatgctgg-----------------------------------------------tgacgcacagg------------acacggggttgttctgggctttctcagctctgctgagtattttgatcttcgacacaagagatgt----ggaaaatgaagactttaagcaggggagtactgcactgtgatc----------ttcgaaaagatcaccctagctgtcttatggagaatgaatgagggtgagagtgaaggggtggggat-ggctaggaagggactgcctctgtccagaagagaaacgatggGGAGGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47643322 418 + 74645514 gttgggattacag-----gcacgagccaccgcatcGGGCCAATAATTGCTTCTTATTCAGAAACAAA-----------CCTTAATACATT-GTTCACATAAAAA---ACACATTGTTTGCcttttcattcattgaacaagtatttattgaatgcctacccTGCG----TggagcagagagggagaggaggagagcagggtgagaggaCGCTGG-----------------------------------------------TGACACACAGG------------ACATGGGGTCGTTCTGGGCTTTCTCAGCTCTGCTGAGTATCTTGATCTTTGACACAAGAGATAT----GGAAAATGAAGACTTTAAGCAGGGGAGTACTGCACTGTGATA----------TTCAAAAAGATCACCCTAGCTGTCTTATGGAGAATGAATGAGGGTGAGAGTGAAGGGGTGGGGAT-GGCTAGGAAGGGACTGCCTCTGTCCAGAAGAGAGACGACGGGGaggt i papAnu2.chr16 C 0 I 264 s chlSab2.chr16 9911951 418 - 75148670 gttgggattacag-----gcacgagccaccgcatcgggccAATAATTGCTTCTTATTCAGAAACAAA-----------CCTTAATACATT-GTTCACATAAAAA---ACACATTGTTTGCCTTttcattcattgaacaagtatttattgaatgcctaccctgcg----tggagcagagagggagaggaggagagcagggtgagaggacgctgg-----------------------------------------------tgacgcacagg------------acacggggtcgttctgggctttctcagctctgctgagtactttgatctttgacacaagagatgt----ggaaaatgaagactttaagcaggggagtactgcactgtgatc----------ttcgaaaagatcaccctagctgtcttatggagaatgaatgagggtgagagtgaaggggtggggat-ggctaggaagagactgcctctgtccagaagagagatgatggGGAGGT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99501064 398 + 122082543 actggagttacagctggcttgctagccac---------cCAA-----GCTTCTCATCTTAAAAAAAAAAAAAAGGattcatttactcattcattcattcatccattcattcattcatcacctattcattcattcCACAAACGTTAACTGAATATCTGTGCTGAGTTACTAGAGCA------------AAGAGAACAGAGTGAGATGAAGCCAGGACTCCCTCCAGATGCTGCCAGTTGAGACCTTTGTGTTCACTGGAATTGGCAGAAAGTCGAAAAACACCCACAGTGGGTGATCCCAGGTCTTCT-AGTTCTGTGATGTGTCTTGCTCTTCAGCATCAGAGTCAT----GGAAATT-----------------------------------------------------------CCTGG--GCCTTGTGGAATGTAAATGAGAGCAGGGGTAAGCACACGGGGAC--ATTAAGAAGGG--------TGTTTGG--------TGAT-------- i mm10.chr11 I 236 C 0 s canFam3.chr9 39329668 368 - 61074082 -----------------------------------------AT-AATGCTTCCTATTAAAAAAAAAA-----------ACTTAATGTATT-GTTCT-----------CCTTTTTATTCATTCatccattccttcaacaaatatttattgaatacttactctaagtgattggagcggagacagcaaggaggga-------------gaagctgg-----------------------------------------------atgcacacaag-------------tgctgggatattccatgctttcctaactctg---agtattttgatcttaaacataagagttttctacggaaa-----ggttttaagtgggagagtgccatgccatgaccacatttgtgttctgaaaaggtaaccctggctgtcttgtggaaaatgcatgagagcaagtgtaaatgtgtgtgggtcagctgggaggctactgcacctactcagaagagagatgat--ggtggt i canFam3.chr9 C 0 C 0 e calJac3.chr5 46405932 18020 - 159171411 T a score=163132.000000 s hg38.chr17_JH159146v1_alt 95196 60 + 278131 ttgCTTGTTAATTTT--------GAT-------TGACTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG s panTro4.chr17 66215803 60 - 82630442 ttgCTTGTTAATTTT--------GAT-------TGACTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24745473 92 - 73212453 ttgCTTTTTAATTTT--------GAT-------TGATTTAGTAAGATATTCAGTATTAGTATTAGTTAGATATTCACTATTAGTAAGATATTAGAGTAAGAGCACAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47965168 60 - 81552678 ttgCTTATTAATTTT--------GAT-------TGATTTAGTAAGATATTCAG--------------------------------GGATATCAGAGTAACAGAACAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076828 60 + 80904711 TTGCTTATTAATTTT--------GAT-------TGATTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52599671 60 + 80997621 TTGCTTATTAATTTT--------GAT-------TGATTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47644004 60 + 74645514 ttGCTTATTAATTTT--------GAT-------TGATTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG i papAnu2.chr16 I 264 C 0 s chlSab2.chr16 9912369 60 - 75148670 TTGCTTATTAATTTT--------GAT-------TGATTTAGTAAGATATTCAG--------------------------------GGATATTAGAGTAAGAGCACAG i chlSab2.chr16 C 0 C 0 s mm10.chr11 99501462 67 + 122082543 CAGCTTGTGACCTTT--------GGTAGCAGAATGGTTTGGTGGAACCCACAG--------------------------------AGATGGTAGGGTGGCGTCATAA i mm10.chr11 C 0 C 0 s canFam3.chr9 39330036 68 - 61074082 ttACTCATTATTTTTTTGTAGGAGAA-------TAATTTGGTGAAATATACAA--------------------------------GGATATTTGAGGAGTAGCACAA i canFam3.chr9 C 0 C 0 e calJac3.chr5 46405932 18020 - 159171411 T a score=186349.000000 s hg38.chr17_JH159146v1_alt 95256 47 + 278131 CATTAACTACTTTTCTGCCGTGAGAAAGAAGACAT---AATAATAGTCAA s panTro4.chr17 66215863 47 - 82630442 CATTAACTACTTTTCTGCCGTGAGAAAGAAGACAT---AATAATAGTCAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24745565 47 - 73212453 CATTAACTACTTTTCTGCCGTGAGAAAGAAGACAT---AATAAAAGTCCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47965228 47 - 81552678 CATTAACTACTTTTCTGCCGTGAGAAAGAAGACAT---AATAAAAGTCAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076888 47 + 80904711 CATTAACTACTTTTCTGCCATGAGAAAGAAGACAT---AATAAAAGTCAA i rheMac3.chr16 C 0 I 22 s macFas5.chr16 52599731 47 + 80997621 CATTAACTACTTTTCTGCCATGAGAAAGAAGACAT---AATAAAAGTCAA i macFas5.chr16 C 0 I 2 s papAnu2.chr16 47644064 47 + 74645514 CATTAACTACTTTTCTGCCATGAGAAAGAAGACAT---AATAAAAGTCAA i papAnu2.chr16 C 0 I 2 s chlSab2.chr16 9912429 47 - 75148670 CATTAACTACTTTTCTGCCATGAGAAAGAAGACAT---AATAAAAGTCAA i chlSab2.chr16 C 0 I 22 s calJac3.chr5 112783020 47 + 159171411 CAGTAATCACTTTTCTGCCTTGAGAAAGAAGGCAT---GATAAAAGTCAA i calJac3.chr5 I 13620 C 0 s mm10.chr11 99501529 50 + 122082543 TGTCAACTGCTTCTCTGCTATGAGAAAGAAGACATTAAAGTAAAATTCAG i mm10.chr11 C 0 I 2 s canFam3.chr9 39330104 43 - 61074082 ----TGTTAGTTTTCTACCATGAAAAAGAAGATGT---CATAAAATTCGA i canFam3.chr9 C 0 C 0 a score=-5070.000000 s hg38.chr17_JH159146v1_alt 95303 35 + 278131 TAATAAATTGACTATTATTATGTCAATAAATTGAC s panTro4.chr17 66215910 35 - 82630442 TAATAAATTGACTATTATTATGTCAATAAACTGAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24745612 22 - 73212453 TTTATTATTGAC---TTTTATGTC----------C i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47965275 22 - 81552678 TTTATTATTGAC---TTTTATGGC----------A i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52599780 20 + 80997621 --TATTATTGAC---TTTTATGGCA---------- i macFas5.chr16 I 2 C 0 s papAnu2.chr16 47644113 20 + 74645514 --TATTATTGAC---TTTTATGGCA---------- i papAnu2.chr16 I 2 C 0 s calJac3.chr5 112783067 22 + 159171411 CTTATTGTTGCC---TTTTATTATA---------- i calJac3.chr5 C 0 C 0 s mm10.chr11 99501581 23 + 122082543 TATGGTTTTTACAGTGCTTAGAC------------ i mm10.chr11 I 2 C 0 s canFam3.chr9 39330147 28 - 61074082 CTTATTACTGAC---TCTTATGGTATCCACA---- i canFam3.chr9 C 0 C 0 e chlSab2.chr16 9912476 22 - 75148670 I e rheMac3.chr16 53076935 22 + 80904711 I a score=835671.000000 s hg38.chr17_JH159146v1_alt 95338 248 + 278131 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGCATAATAGACACGGTGTCTATTATGGTACCTTAAACTGTATATGTTTGATATGTGTCCTATTCAGTAGGCTTTTAGACAGG-----GAG-----TAATCATAT-GTTTTGCCAAAATATTTTTTTGTTCAAGGCTCTCAACTTGCTTTATGGACAAGTAACTACCACGATGGACTTTTtcttatggatgtaagaactaaggcagtgaaaggaggaag- s panTro4.chr17 66215945 248 - 82630442 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGCATAATAGACACGGTGTCTATTATGGTACCTTAAACTGTATATGTTTGATATGTGTCCTATTCAGTGTGCTTTTAGACAGG-----GAG-----TAATCATAT-GTTTTGCCAAAATATTTTTTTGTTCAAGGCTCTCAACTTGCTTTATGGACAAGTAACTACCATGACGGACTTTTtcttatggatgtaagaactaaggcagtgaaaggaggaag- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24745634 247 - 73212453 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGCATAATAGACACGGTGTCTATTATGGTACCTTAAATTGTACATGTTTGATATGTGTCCTATTCAGTGTGCTTTTAGACAGG-----AAG-----TAATCATAT-GTTTTGCCAAAATATTTTTTTGTTCAAGGCTTTCAACTTGCTTTATGGACAAGTAACAACCATGATGGActttttc-tatggatgtaagaactaaggcagtgaaaggaggaag- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47965297 253 - 81552678 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGCATAATAGACACGGTGTCTATTACGGTACCTTAAACTGTACTTGTTTGATATGTATCCTCTTTAATGTGCTTTTGGACAAGAAGTAGAG-----TAATCATAT-GTTTTGCCAAAATATTTTTTTGTTCAAGGCTCTCAGCTTGctttatggacaagtaactaccatgatggactttttcttatggatgtaagaactaaggcagtgaaaggaggaag- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53076957 247 + 80904711 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGTGTAATAGACACGGTGTCTATTATGGTACCTTAAACTGCACGTGTTTGATATGTATCCTATTCAGTGTGCTTTTAGACAGG-----AAG-----TAATCATAT-GTTTTGCCAAAATA-TTTTTTGTTCAAGGCTCTCAACTTGCTTTGTGGACaagtaactaccatgatggactttttcttgtggatgtaagaactaaggcagtgacaggaggaag- i rheMac3.chr16 I 22 C 0 s macFas5.chr16 52599800 247 + 80997621 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGTGTAATAGACACGGTGTCTATTATGGTACCTTAAACTGCACGTGTTTGATATGTATCCTATTCAGTGTGCTTTTAGACAGG-----AAG-----TAATCATAT-GTTTTGCCAAAATA-TTTTTTGTTCAAGGCTCTCAACTTGCTTTGTGGACaagtaactaccatgatggactttttcttgtggatgtaagaactaaggcagtgacaggaggaag- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47644133 247 + 74645514 CCTGTGGTGTGTATATGCTGCATTTG-TTATTCGAGAGGATTGTGTAATAGACACGGTGTCTATTATGGTACCTTAAACTGTACGTGTTTGATATGTATCCTATTCAGTGTGCTTTTAGACAGG-----AAG-----TAATCATAT-Gttttgccaaaata-ttttttgttcaaGGCTCTCAACTTGCTTTGTGGACAAGTAACTACCATGATGGACTTTTTCTTGTGGATGTAAGAACTAAGGCAGTGACAGGAGGAAG- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9912498 247 - 75148670 CCTGTGGAGTGTATATGCTGCATCTG-TTATTCGAGAGGATTGTGTAATAGACACGGTGTCTATTATGGTACCTTAAACTGTATGTGTTTGATATGTATCCTATTCAGTGTGCTTTTAGACAGG-----AAG-----TAATCATAT-GTTTTGCCAAAATA-TTTTTTGTTCAAGGCTCTCAACTTGCTTTGTGGACaagtaactaccatgatggactttttcttgtggatgtaagaactaaggcagtgacaggaggaag- i chlSab2.chr16 I 22 C 0 s calJac3.chr5 112783089 242 + 159171411 CCTGTGTTGTGTATGTGCTGCATTTG-TTATTTAAGAGGATTGTACAATAAACTTGGTGTC--TTATGGTACCTTAAACTGTACATGTTTGACATGTATCTTGTTCTGTATGCTTTTTGACAGG-----AAG-----TAATC--AT-GTTTTGCC-CAATATTTTTTTGTTCAAGGTTCTCAGTGTGCTTTATGGACAAGTAACTACCATGGT-GACTTTTTCTTATGGATGTAATAACTAAGGCAGTGAAAGGAGGAAG- i calJac3.chr5 C 0 I 63 s mm10.chr11 99501604 199 + 122082543 ---------TGCGCATACTGAATTGT-CTA---GCGAGCAGTATGCAATAAATACACTCATTATTCTAG----CTGGACCATTCAT-TTTGATACATGAGCTAATCAGTATGCCTTTAA--TGG-----GAG-----TACCCATACAATTCCACTAAAGCATTCTTTTGTTTGAGGTTCTGGCCCTGTTTTATAG-------------------------------TAGACGAGAGAATTAAAATAGCAATAAGATAAAG- i mm10.chr11 C 0 C 0 s canFam3.chr9 39330175 246 - 61074082 ------GTATGTA---GCTGTGTTGACCTTTTCTACAGACTTATATCGTAAGCACAGTGTTGAGTATGCTATTTTAGACTATACATGTTTGATACATGTCCTAATCAGTCTGCTTTTAGGCAGG-----AAGTAGGCTAATCAGAT-AGTTGGCTAAAGTATTCTTTTGTTCAAGGCTCTTAACCTGTTTTATGAATAATTAACTACTATGATGGACTCTCTGTTACAGATAAAAGAATTTACATAGTAAAAAGATTTTAG i canFam3.chr9 C 0 C 0 a score=280108.000000 s hg38.chr17_JH159146v1_alt 95586 103 + 278131 acttgcctaaggttgtgcagtgagttaatggcaaaggggccctagagccca-ctccctacatggctgctgg-ttcgtattTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT s panTro4.chr17 66216193 103 - 82630442 acttgcctaaggttgtgcagtgagttaatggcaaaggggccctagagccca-gtccctacatggccgctgg-ttcgtattTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24745881 103 - 73212453 acttgcctaaggttgtgcagtgagttaatggcaaaggggccctagagccca-gtccctacatggctgctgg-ttcgtattTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47965550 103 - 81552678 acttgcctaaggttatgcagtgagttagtggcgaaggtgccctagagccca-gTCCCTACATAGCCACTGG-TTCATATTTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53077204 103 + 80904711 acttgcctaaggttgtgcagtgagttaatggcaaagatgccctagagccca-gTCCCTACATAGCCACTGG-TTCGTATTTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52600047 103 + 80997621 acttgcctaaggttgtgcagtgagttaatggcaaagatgccctagagccca-gTCCCTACATAGCCACTGG-TTCGTATTTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47644380 103 + 74645514 ACTTGCCTAAGGTTGTGCAGTGAGTTAGTGGCAAAGATGCCCTAGAGCCCA-GTCCCTACATAGCCACTGG-TTCGTATTTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9912745 103 - 75148670 acttgcctaaggttgtgcagtgagttaatggcaaagatgccctagagccca-gTCCCTGCATAGCCACTGG-TTCGTATTTCA-------------------------------------CCCATGTGCTTAC--------------------------------------------------------------------------------------AGAGACTTT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99501803 226 + 122082543 CATTGCTTCAGATTGCCTTTTGAGGCAGTGGTGAAGGGACC--GGAGCCTGCCTGACCACATGACCAAAGGCTTTGTACTTCATCCCTGTTTGTGGAGGACACACACATACACAGGAGCGCCCATGAGTGTacacacacacacacacacacacacacacacacaTGAACATGGAGCATGCATAAATCCCACACACAGAAAAGAGAAAGTGGATGGAAATAGAGGCTTT i mm10.chr11 C 0 I 45 s canFam3.chr9 39330421 102 - 61074082 ATTTGCCTGAAGTTGTCCAGT--GTCAATGGCACAGGAGCCTTGGAGCCCA-TCCCTTACTTGACCACTGGCTTCAAATTTCA-------------------------------------TCCATGTATTTAC--------------------------------------------------------------------------------------CATGACTTC i canFam3.chr9 C 0 C 0 e calJac3.chr5 112783331 63 + 159171411 I a score=11260.000000 s hg38.chr17_JH159146v1_alt 95689 7 + 278131 ACCCATG s panTro4.chr17 66216296 7 - 82630442 ACCCATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24745984 7 - 73212453 ACCCGTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47965653 7 - 81552678 ACCCGTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53077307 7 + 80904711 ACCCTCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52600150 7 + 80997621 ACCCTCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47644483 7 + 74645514 ACCCTCG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9912848 7 - 75148670 ACCCTCG i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39330523 7 - 61074082 ATATATG i canFam3.chr9 C 0 C 0 e mm10.chr11 99502029 45 + 122082543 I e calJac3.chr5 112783331 63 + 159171411 I a score=412259.000000 s hg38.chr17_JH159146v1_alt 95696 159 + 278131 TGTACAGTGTCTTCTCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATATGCGTGAAT---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTACTAATCACGACTCGATTTTTAGTTTGCG-ATACAGGTTT--TTCTTTTCCC-TTCCCTCCTTTCTTTTGGTT s panTro4.chr17 66216303 157 - 82630442 TGTACAGTGTCTTCTCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATATGCGTGAAT---GCTGTTCTCATCAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCATAGATTACTAAT--CGACTCGATTTTTAGTTTGCG-ATACAGGTTT--TTCTTTCCCC-TTCCGTCCTTTCTTTTGGTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24745991 159 - 73212453 TGTACAGTGTCTTCTCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATATGCGTGAAT---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTACTAATCACGACTTGATTTTTAGTTTGCG-ATACATGTTT--TTCTTTCCCC-TTCCCTCCTTTCCTTTGGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47965660 159 - 81552678 TGTACAGTGCCTTCTCACATTT-----------------------------------------ACTTTTCGGTTTCTCCCTTCTATATGCGTGAAT---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTTGTAGATTACTAATCACGACTTGATTTTTAGTTTGCG-ATACAGGTTT--TTCTTTCCCC-TTCCCTCCTTTCTTTTGGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53077314 159 + 80904711 TGTACAGTATCTTCCCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATCTGCGTGAAC---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTGCTAATCACGACTTGATTTTTAGTTTGTG-ACACAGGGTT--TTCTTTCCCC-TTCCCTCCTTTCTTTTGGTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52600157 159 + 80997621 TGTACAGTATCTTCCCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATCTGCGTGAAC---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTGCTAATCACGACTTGATTTTTAGTTTGCG-ACACAGGGTT--TTCTTCCCCC-TTCCCTCCTTTCTTTTGGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47644490 159 + 74645514 TGTACAGTGTCTTCCCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATATGTGTGAAT---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTGCTAATCATGACTTGATTTTTAGTTTGTG-ACACAgagtt--ttctttcccc-ttccttcctttcttttggtt i papAnu2.chr16 C 0 I 252 s chlSab2.chr16 9912855 159 - 75148670 TGTACAGTGTCTTCCCACATTT-----------------------------------------ACTTCTAGGTTTCTCCCTTCTATCTGTGTGAAC---GCTGTTCTCATTAC------------------------------------------------------------------------------------------------------------CTATTTTACTGCTCGTAGATTGCTAATCACGACTTGATTTTTAGTTTGCG-ACACAGGGTT--TTCTTTCCCC-TTCCCTCCTTTCTTTTGGTT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99502074 300 + 122082543 TGTGCAACATTTCCACACCTATGTGCCACGAGTGATGCCCAGAGAGAGCTACCAGAATTCCCAACTTCTTTGCTCATCCTTTCTTTTTGGAAACACCAAGCTGTTGTCTTTCCGTTTTCCTCGGATATACATTATTTTATCTGATCCGGGTCTTACTATACAGATTCATTTCGTTTCCAGGTGTCACACAGAGCCTTGTCATCTAAGCAGCTGTGGTCCCTCTGCTTTGCTGATGATAAACTGCTAACCACAGCTCGGCCTTTGGGCT-----CAC---------TCTTTCCCT-CCTCGTTCTTTTCTTTAGCT i mm10.chr11 I 45 I 1 s canFam3.chr9 39330530 155 - 61074082 TTTACAGTATCTTTGCAGATTT-----------------------------------------ATTTCTTGGTTGCTCCTTTTAATATTTGTGAGT---GATATTCTCCTTAC------------------------------------------------------------------------------------------------------------CTATTTCCTT--------ATTACTATTCATGGCTTGGCTTTTGGTTTGGGAAAACTGGATTTATTCTTTCTCCATTCTCTCCTTTCTTTTGGTT i canFam3.chr9 C 0 C 0 e calJac3.chr5 112783331 63 + 159171411 I a score=716854.000000 s hg38.chr17_JH159146v1_alt 95855 290 + 278131 TGGAATATTTGCTTTTCAAAGCTCTGTTATTCTAACTAAAAC-----TTTTTTTTTTTT--AATTTTTGAAGATCTTCTTGATGGTG----ACATTTTCTGCATCTTTGTTgcagtttggactagtgggaaggattttgggctaggggtttaaagtccacgctctaccgttaa-cccacccacctagcaacattaacctctctggtctcaaagttcttaccatgaaaatgagactgccaataattttccttgtagtttagagggttgttgtggggagcaagtgagttaatgtacatacataa s panTro4.chr17 66216460 289 - 82630442 TGGAATATTTGCTTTTCAAAGCTCTGTTATTCTAACTAAAAC------TTTTTTTTTTA--AATTTTTGAAGATCTTCTTGATGGTG----ACATTTTCTGCATCTTTGTTgcagtttggactagtgggaaggattttgggctagggggttaaagtccacgctctgctgttaa-cccacccacctagcaacattaacctctctggtctcaaagttcttaccatgaaaatgagactgccaataattttccttgtagtttagagggttgttgtggggagcaagtgagttaatgtacatacataa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24746150 292 - 73212453 TGGAATATTTGCTTTTCAAAGCTCTATTATTCTAACTAAAAC----TTTTTTTTTTTTT--AATTTTTGAAGATCTTCTTGATGGTG----ACATTTTCTGCATCTTTGTTGCAATTTGAACTAGCGGGAAggattttgggctagggggttaaagtccatgctctgctgttaaccccacccacctagcaacattaacctctctggtctcaaagttcttaccatgaaaatgagactgccaataattttccttgtagtttacagggttgttgtggggagcaagtgagttaatgtacatacataa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47965819 291 - 81552678 TGGAATATTTGCTTTTCAAAACTCTATTATTCTAACTAAAAC----TTTTTTTAAAAAA--AATTTTTGAAGATCTTCTTGATGGTG----ACATTTTCTGCATCTTTGTTgcagtttggactagtgggaaggattttgggctagggggttaaagtacatgctctgctgttaa-cccacccacctagcaacattaacctctctggtctcaaagttcttaccatgaaaatgagactgccaataattttccttttagtttacagggtcgttgtggggagcgcatgagttaatgtaCATACATAA i nomLeu3.chr19 C 0 M 241 s rheMac3.chr16 53077473 278 + 80904711 TGGAATGTTTGCTTTTCAAAGCTCTATTATTCTAACTAAATC---TTTTTTTTTTTGTT--ATGTTTTGAAGATCTTCTTGATGGTG----ACCTTTTCTGCATCTTTGGTgcagtttggactagtgggaaggattttgggc-tgggggctaaagtccatgctctgctgttaa-cccacccacctagcaacattaacc-cactggtctcaaggttcttaccatgaaaatg------------attttccttgtagtttacagggttgttgtggggggcaagtgagttaatgtacatacataa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52600316 281 + 80997621 TGGAATGTTTGCTTTTCAAAGCTCTATTATTCTAACTAAATCttttttttttttttgtt--atgttttGAAGATCTTCTTGATGGTG----ACCTTTTCTGCATCTTTGGTGCAGTTTGGACTAGTGGGAAGGATTTTGGGC-TGGGGGCTAAAGTCCATGCTCTGCTGTTAA-CCCACCCACCTAGCAACATTAACC-CACTGGTCTCAAGGTTCTTACCATGAAAATG------------ATTTTCCTTGtagtttacagggttgttgtggggggcaagtgagttaatgtacatacataa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47644901 284 + 74645514 tggaATGTTTGCTTTTCAAAGCTCTATTATTCtaactaaatcttttttttttttttttttaatgttttgaagatCTTCTTGATAgtg----accttttctgcatctttggTGCAGTTTGGACTAGTGGGAAGGATTTTGGGCgggggggTTAAAGTCCATGCTCTGCTGTTAA-CCCACCCACCTAGCAACATTAACC-CACTGGTCTCAAGGTTCTTACCATGAAAATG------------ATTTTCCTTGTAGTTTACAGGGTTGTTGTGGGGGGCAAGTGAGTTAATGTACATACATAA i papAnu2.chr16 I 252 C 0 s chlSab2.chr16 9913014 281 - 75148670 TGGAATGTTTGCTTTTCAAAGCTCTATTATTCTAACTAAACC-TTTTTTTTTTTTTTTT--AAGTTTTGAAGATCTTCTTGATGGTG----ACCTTTTCTGCATTTTTGTTGCAGTTTGGACTAGTGGGAAGGATTTTGGGCTGGGgggttaaagtccatgctctgctcttaa-cccacccacctagcaacattaacc-cactggtctcaaggttcttaccatgaaaatg------------attttccttgtagtttacagggttgttgtggggggcaagtgagttaatgtacatacataa i chlSab2.chr16 C 0 C 0 s mm10.chr11 99502375 227 + 122082543 TGGAAAGTTTGCTTTT--ATGCTCCCTTAGTTTCATTCCCACCTCCCCCCTTCCCCTTA--AA-----AAAAATCACC-----------------------------TGTTGTGATACTGATAAGTAGACGGGA--CTGTGCCTGGGATTCACAGTTCCTATGCTGTTATTAA-----GCAACCTGGCAAAGTTGACCTCCCTGGTCTCAATGGGACCACC-----GATG------------ACAGTCATGGTTGTTCACAGGGTTGTTG-GGGTAGTGGATGAATTAAT------------ i mm10.chr11 I 1 C 0 s canFam3.chr9 39330685 278 - 61074082 AGGAATTATTGCTTTT------TCTACCCTTTTAGCTTCAAAGAATTTCCTGCCCCTTT--AA------AAAATCACCCTGATGCTGCTGTACTTTTTCCATATCTTTGTTAcagtgtggattagcggaagggactttggcc-tgggggttaaagaccctgctcttctattaa-----cacactgggcaatcttaacc-tcttggtctcaattttcttatcattgaaatgagactaaca---gtcttccctgtaattaatagggctgttgttgggagtgaatgagttaacgtacatatgtga i canFam3.chr9 C 0 C 0 e calJac3.chr5 112783331 63 + 159171411 I a score=34140.000000 s hg38.chr17_JH159146v1_alt 96145 15 + 278131 gctttgtgatctaca s panTro4.chr17 66216749 15 - 82630442 gctttgtaatctaca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24746442 15 - 73212453 gctttgtaatctaca i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53077751 15 + 80904711 actgtgtaatctata i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52600597 15 + 80997621 actgtgtaatctata i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47645185 15 + 74645514 ACTGTGTAAtctata i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9913295 15 - 75148670 actttgtaatctata i chlSab2.chr16 C 0 C 0 s mm10.chr11 99502602 15 + 122082543 GCTTTGTAATATGTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39330963 15 - 61074082 gctctataatctgta i canFam3.chr9 C 0 C 0 e calJac3.chr5 112783331 63 + 159171411 I e nomLeu3.chr19 47966110 241 - 81552678 M a score=158316.000000 s hg38.chr17_JH159146v1_alt 96160 70 + 278131 tgtaatatatatacaTTAGCTATGTAATAGGTGTGTAC-TTTACATACATGAGCCACATAATTGGTATGTA s panTro4.chr17 66216764 70 - 82630442 tgtaatatatatacaTTAGCTATGTAATAGGTGTGTAC-TTTACATACATGAGCCACATAATTGGTATGTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24746457 70 - 73212453 tgtaatatatatacaCTAGCTATGTAATAGGTGTGTAC-TTTACATACATGAGCCACATAATTGGTATGTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47966351 70 - 81552678 TGTAATATATATATATTAGCTATGTAATAGGTGTGTAC-TTTACATACATAAGCCACATAATTGGTATGTA i nomLeu3.chr19 M 241 C 0 s rheMac3.chr16 53077766 70 + 80904711 TGTAGTATATATACATTAGCTACGTAATAGGTATGTGC-TTTACATACATGAGCCACATAATTGGTATGTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52600612 70 + 80997621 TGTAGTATATATACATTAGCTACGTAATAGGTATGTAC-TTTACATACATGAGCCACATAATTGGTATGTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47645200 70 + 74645514 tgtagtatatatacattaGCTATGTAATAGATATGTAC-TTTACATACATGAGCCACATAATTGGTATGTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9913310 70 - 75148670 TGTAGTATATATACATTAGCTACGTAATAGGTATGTAC-TTTACATATACGAGCCACATAACTGGTATGTA i chlSab2.chr16 C 0 C 0 s mm10.chr11 99502617 65 + 122082543 TGCTCtgtgtatgtgtgtg-tgtgt-gtgtgtgtgtgtgtgtgtACACATG----ACTTCATCACTGTGTA i mm10.chr11 C 0 I 112 s canFam3.chr9 39330978 16 - 61074082 tgtagtgtatatacat------------------------------------------------------- i canFam3.chr9 C 0 C 0 e calJac3.chr5 112783331 63 + 159171411 I a score=205309.000000 s hg38.chr17_JH159146v1_alt 96230 82 + 278131 ACAAACATACTTGAACTATGTAATTTTCAAGCAATGTACACACATGATACATGTAATCTGTATGTAATATACATACAGAAGC s panTro4.chr17 66216834 82 - 82630442 ACAAACATACTTGAACTATGTAATTTGCAAGCAATGTACACACATGATACATGTAATCTGTATGTAATATACATACAGAAGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24746527 82 - 73212453 ACAAACATACTTGAACTATGTAATTTGCAAGCAATGTACACACATGATACATGTAATCTGTATGTAATATACATACAGAAGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47966421 79 - 81552678 ACAAACATACTTGAACTATGTAATTGGCAAGCAATGTACACAC---ATACGTGTAATCTGTATGTATTATACATACAGAAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53077836 80 + 80904711 ACAAATATACTTGAACTATGTAATTTGCAAGCAATGTACACCG--GATACATGTAATCTGTATGTAATATACATACAGAAGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52600682 80 + 80997621 ACAAATACACTTGAACTATGTAATTTGCAAGCAATGTACACCG--GATACATGTAATCTGTATGTAATATACATACAGAAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47645270 80 + 74645514 ACAAATATACTTGAACTATGTAATTTGCAAGCAATGTACACAT--GATACATGTAATCTGTATGTAATATACATACAGAAGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9913380 80 - 75148670 ACAAACATACTTGAACTATGTAATTTGCAAGCAATGTACACAC--GATACATGTAATCTGTATGTAATATACATACAGAAGC i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39330994 68 - 61074082 ------------gAACTATGTAATCTGCATGCTATGTGTATAGACAAATTATGTAGTCTGTA--CAGTGTACACACATGAGC i canFam3.chr9 C 0 C 0 e mm10.chr11 99502682 112 + 122082543 I e calJac3.chr5 112783331 63 + 159171411 I a score=270648.000000 s hg38.chr17_JH159146v1_alt 96312 103 + 278131 TATGTAATAGGTCTGTAGG------GTACACATACAAGCTTTGTAATCTGTAGACTGCTGTGCAGAGATGAGGGCAGAGGAGGAGAATG-----------ATTAA---------AAAACACCCGTATTC s panTro4.chr17 66216916 103 - 82630442 TATGTAATAGGTCTGTAGT------GTACACATACAAGCTTTGTAATCTGTAGACTGCTGTGCAGAGATGAGGGCAGAGGAGGAGAATG-----------ATTAA---------AAAACACCCGTATTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24746609 103 - 73212453 TATGTAATAGGTCTGTAGT------GTACACATACAAGCTTTGTAATCTGTAGACTGCTGTGCAGAGATGAGGGCAGAGGAGGAGAATG-----------ATTAA---------AAAACACCCCTTTTT i ponAbe2.chr17 C 0 I 2327 s nomLeu3.chr19 47966500 103 - 81552678 TATGTAATAGGTCTGTAGT------GTACGCATACAAGCCTTGCAATCTGTAGACTGCTGTGCAGAGATGAGGGCAGAGGAGGAGAATG-----------ATTAA---------AAAACACCTCTATTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53077916 103 + 80904711 TATGTAATAGGTCTGTAGT------GTACATATACAAACTGTGTAATCTGTAGAGTGCTGTGCACAGATGACGGCAGGGGAGGAGAGTG-----------ATTAA---------AAAACACCCCTATTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52600762 103 + 80997621 TATGTAATAGGTCTGTAGT------GCACACATACAAACTGTGTAATCTGTAGAGTGCTGTGCACAGATGAGGGCAGGGGAGGAGAGTG-----------ATTAA---------AAAACACCCCTATTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47645350 103 + 74645514 TATGTAATATGTCTGTAGT------GTACATATACAAACTTTGTAATCTGTAGAGTGCTGTGCACAGAtgagggcaggggaggagagtG-----------ATTAA---------AAAACACCCCTATTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9913460 103 - 75148670 TATGTAATAGGTCTGTAGT------GTACATATACGAACTTTGTAATCTGTAGAGTGCTGTGCACAGATGAGGGCAGGGGAGGAGAATG-----------ATTAA---------AAAACACCCCTATTC i chlSab2.chr16 C 0 C 0 s mm10.chr11 99502794 120 + 122082543 tgtgt-gtgtgtgtgtAGGAAACAAGTACACACATGAGCTTTTTAGTT-------TGCTGTGCACAAATTCAAGCAGATGGTGAGGGTGTTGTTGTTGCCATTGATGGTGATTTTAAATGCTCAGTCT- i mm10.chr11 I 112 C 0 s canFam3.chr9 39331062 103 - 61074082 TGTGTAATTGGCATATAAT------GTATTCATATGAGCTTTGTAATTCGTAAGTTTCAGTGCACAGTTGAGAGAGGAGGATAGTGATG-----------ATTGT---------TATACACTCCTTGTC i canFam3.chr9 C 0 C 0 e calJac3.chr5 112783331 63 + 159171411 I a score=1100018.000000 s hg38.chr17_JH159146v1_alt 96415 384 + 278131 CACCCTGAAGTCAGGATCCCACAAGTCTGGACAGAGGGGAGACCGATGAAGTTGTCAGGAAGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGCTATAATTCTGTCCCCAGGTGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGCTCAGTCTAGATTTATGCTGATGAATACCCTGGTTACCAGC-----TGTCAGTTCACA-TCCCAATTCTGCCAT-TGCTAC-------CCAGTTCTTCAGTctttaatttccacagctgtgaactgagattaatactcagccctgattgat-ggggttgttgtggaaacgaaaggagataatctat---gcattatacattaaaaa-gtactCAGTGATACTATT s panTro4.chr17 66217019 384 - 82630442 CACCCTGAAGTCAGGATCCCACAAGTCTGGACAGAGGGGAGACCGATGAAGTTGTCAGGAAGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGCTATAGTTCTGTCCCCAGGTGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGGTCAGTCTAGATTTATGCTGATGAATaccctggttaccagc-----tgtcagttcaca-tcccaattctgccat-tgctac-------ccagttcttcagtctttaatttccacagctgtgaactgagattaatactcagccctgattgat-ggggttattgtggaaacaaaaggagataatctat---gcattatacattaaaaa-gtactCAGTGGTACTATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24749039 384 - 73212453 CACCCTGTAGTCAGGATCCCACAAATCTGGACAGACGGGAGACTGATGAACCTGTCAGGAAGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGTTATAGTTCTGTCCCCAGGTGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGGTAAGTCTAGATTTATGCTGATGAATaccctggttaccagc-----tgtcagttcaca-tcccgattctgccat-tgctac-------ccagttcttcagtctttaatttccacagctgtgaactgagattaatactcagccctgattgat-ggggttattgtggaaatgaaaggagataatctat---gcattatacattaaaaa-gtactCAGTGGTACTATT i ponAbe2.chr17 I 2327 C 0 s nomLeu3.chr19 47966603 383 - 81552678 CACCCTGCAGTCAGGATCCCACGAGTCTGGACAGAGGCGAGACCGATGAAGTTGTCAGGAAGTCACAAGGGCTAGATGAAAAAGTCTAACCTAAAAGCTATAGTTCTGTCCCCAGATGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATGAACTTAGTCCATGTAAAGGTCAGTCTAGATTTATGCTGATGAATaccctggttaccagc-----tgtcagttcaca-tcccaattctgccat-tgttac-------ccagttcttcggtctttaatttccacagctgtgacctgagattaatactcagccctgattgat-ggggttattgtggaaatgaaaggagataatctat---gcaTTATA-ATTAAAAA-GTACTCAGTGGTACTATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53078019 382 + 80904711 CACCCTGCAGTCAGGATCCCACAAGTCTGGACGGAGGGGAGACCAATGAAGTTGTCAGGAGGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGCTATAGTTCTGTCTCCAGATGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGGTCAGTCTAGATTTATGCTGATGAATactctggttaccagctttaatttaagttcaca-tcccaattctgccat-tgctac-------ccaattcttcagtctttaatttccacagctgtgaactgagattaatactcagccctgattgat-ggtgttattgtggaaatgaaagcagataatccat---gcattatacattaaaa--------agtggtaCTATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52600865 382 + 80997621 CACCCTGCAGTCAGGATCCCACAAGTCTGGACAGAGGGGAGACCAATGAAGTTGTCAGGAGGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGCTATAGTTCTGTCTCCAGATGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGGTCAGTCTAGATTTATGCTGATGAATACTCTGGTTACCAGCTTTAATTTAAGTTCACA-TCCCAATTCTGCCAT-TGCTAC-------CCAATTCTTCAGTCTTTAATTTCCACAGCTGTGAACTGAGATTAATACTCAGCCCTGATTGAT-GGTGTTATTGTGGAAATGAAAGCAGATAATCCAT---GCATTATACATTAAAA--------AGTGGTACTATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47645453 382 + 74645514 CACCCTGCAGTCAGGATCCCACAAGTCTGGACAGAGGGGAGACCAATGAAGTTGTCAGGAAGTCACAAGGGCTAGATGAAAAAGTCTAGCCTAAAAGCTATAGTTCTGTCTCCAGATGAACTTAAGGAGAAACAGGAACTTCAGgagtttacattttataaatttagtccATGTAAAGGTCAGTCTAGATTTATGCTGATGAATACTCTGGTTACCAGCTTTAATTTAAGTTCACA-TCCCAATTCTGCCAT-TGCTAC-------CCAATTCTTCAGTCTTTAATTTCCACAGCTGTGAACTGAGATTAATACTCAGCCCTGATTGAT-GGTGTTATTGTGGAAATGAAAGCAGATAATCCAT---GCATTATACATTAAAA--------AGTGGTACTAtt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9913563 363 - 75148670 CACCCTGCAGTTAGGATCCCACAAGTCTGGCCAGAGGGGAGACCAATGAAGTTGTCAGGAAGTCACCAGCGCTAGATGAAAAAGTCTAGCCTAAAAGCGATAGTTCTGTCTCCAGATGAACTTAAGGAGAAACAGGAACTTCAGGAGTTTACATTTTATAAACTTAGTCCATGTAAAGGTCAGTCTAGATTTATGCTGATGAATACTCTGGTTACCAGCTTTAATTTAAGTTCACA-TCCCAATTCTGCCAT-TGCTAC-------CCAATTCTTCAGTCTTTAATTTCCACAGCTGTGAA-------------------CTGATTGAT-GGTGTTATTGTGGAAATGAAAGCAGATAATCCAT---GCATTATACATTAAAA--------AGTGGTACTGTT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99502914 360 + 122082543 TAGCCTGTAGTCATGACCCCGCACAGCTGAACAGCAAGGAAACCAGTG-GGTTGTAAGAAAGCCATGAAGGCTGGATTAAAAGTTCTAGTGTAAAGAC-ATTTGTCTCTTTCCAAGTGAATTCAACGAAAAGCACTAGCTTTCAG-GTTTATATTTTATAAACACAG-ACATGTGACAATCCATCCAG----ATGCAGATGGCAGTTCTGGTGACCAGC-----CTTC----------------TCTGACTC-TGCTGCCCGAATTCCAGCCCCTCTCTCCTCAGTTCCCACAGCTTTGAATTAAACTGAACTGACAGCCCTCAT------GTG-------GGAAGTCCACCTAGGTAATATATACAGCATTGTCCATAAGAAGTGCACATAGTAATGCTATT i mm10.chr11 C 0 I 1054 s canFam3.chr9 39331165 382 - 61074082 TGCCCTGTAGCCACGATCCCACAGGTCTTGAGAAAGAGGAGACCGATGAAGTAGTCAGGAGATCACAAGGGCTTGATAAAAAAGCCTCGCCTTACAAGCATACTTCTGTCCCCAAATGAACCCAGAAATAAACATTAATTGCAAGAGTTTACATTTTATAGATGCAGTCCATGTGAAGGTTAGTGTACATTTATGCTGATGAATGTTCTAGTGACCAGC-----CTCAAGTTCAGATTTTTGACCCTGCCATCTGCTGC-------CCAActctacaggtttcaatttccacaaatgtgaactgagcttaatactca-ctttgatggataggggttattgtaggaattaaattagataattgat---gcactgcacataaaa---gtgctcagtgatgctt-- i canFam3.chr9 C 0 C 0 e calJac3.chr5 112783331 63 + 159171411 I a score=175510.000000 s hg38.chr17_JH159146v1_alt 96799 85 + 278131 ATGAAAAtgtgtctgtgtgtgtttg------------------tgtgtgtatgtgtgagtgtgtTAGAATA---CTCTATTTTAGCTAGGTGAAATAAGCCTATAT---- s panTro4.chr17 66217403 85 - 82630442 ATGAAAAtgtgtctgtgtgtgtttg------------------tgtgtgtatgtgtgagtgtgtTAGAATA---CTCTATTTTAGCTAGGTGAAATAAGCCTATAT---- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24749423 85 - 73212453 ATGAAAAtgtgtctgtgtgtgtttg------------------tgtgtgtatgtgtgagtgtgtTAGAATT---CTCTGTTTTAGCTAGGTGAAATAAGCCTATAT---- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47966986 85 - 81552678 ACGAAAAtgtgtctgtgtgtgtttg------------------tgtgtgtatgtgtgagtgtgtTAGAATA---CTCTATTTTAAATAGGTGAAATAAACCTATAT---- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53078401 77 + 80904711 ATGAAAAtgtgtctgtgtgtgtgtt--------------------------tgtgtgtgtgtgtTAGAATA---CTCTATTTTAGCTAGGTGAAATAACCCTATCT---- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52601247 77 + 80997621 ATGAAAAtgtgtctgtgtgtgtgtt--------------------------tgtgtgtgtgtgtTAGAATA---CTCTATTTTAGCTAGGTGAAATAACCCTATCT---- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47645835 103 + 74645514 atgaaaatgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagaata---CTCTATTTTAGGTAGGTGAAATAACCCTATCT---- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9913926 95 - 75148670 ATGAAAATGTGTCTCTCtgtgtgtg--------tgtgtgtgtgtgtgtgtgtatgtgtgtgtgtTAGAATA---CTCTATTTTAGCTAGGTGAAATAACCCTATCT---- i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39331547 74 - 61074082 attaaaACACATGTGTGCGTTTCTG------------------------------------TGTTAGAATGGTTGTCTATTCTGGTCAGACAAAATAAGCCCACATCACT i canFam3.chr9 C 0 C 0 e mm10.chr11 99503274 1054 + 122082543 I e calJac3.chr5 112783331 63 + 159171411 I a score=667082.000000 s hg38.chr17_JH159146v1_alt 96884 222 + 278131 CTATGTTCTGGTTTTGGATA-C-TTTTGCTGAGAAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTATTTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAATCCCCAA-TTTTTTGTTTTGCTATATTTTATTCTTACTATTATCATGTTATCTGTTTAAAGT--------TATTTTAGGGCAGGCACTCTTT s panTro4.chr17 66217488 219 - 82630442 CTATGTTCTGGTTTTGGATA-C-TTTTGCTGAGAAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAA-----TTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAATCCCCAA-TTTTTTGTTTTGCTGTATTTTATT----CTATTATCATGTTATCTGTTTAAAGTTAT--TTATATTTTAGGGCGGGCACTCTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24749508 228 - 73212453 CTATGTTCTGGTTTTGGATA-C-TTTTGCTGAGAGGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTACTTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAATCCCCAA-TTTTTTGTTTTGCTATATTTTATTCTTACTATTATCATGTTATCTGTTTAAAGTTAT--TTATATTTTAGGGCGGGCACTCTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47967071 224 - 81552678 CTATGCTCTGGTTTCGGATA-C-TTTTGCTGAGTAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTATTTGAATATGCTTTGTGACTTTTAAAATTTCACTTTTCT---------------------------------------ATATAAATTATATCCCAAACATAATCCCCAA-TTttttgttttgctatattttatt----ctattatcatgttatctgtttaaagttat--ttatattttaGGGCGGGCACTCTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53078478 228 + 80904711 CTATGTTCTGGTTTTGGATA-C-GTTTGCTGAGAAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTATTTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAGTCCCTAA-TTTTTTGTTTTGCTATATTTTATTCTTACTGTTATCATGTTATCTGTTTAAAGTTAT--TTATATTTTAGGGTGGGCACTCTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52601324 228 + 80997621 CTATGTTCTGGTTTTGGATA-C-GTTTGCTGAGAAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTATTTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAGTCCCTAA-TTTTTTGTTTtgctatattttattcttactgttatcatgttatctgttTAAAGTTAT--TTATATTTTAGGGTGGGCACTCTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47645938 228 + 74645514 CTATGTTCTGGTTTTGGATA-C-GTTTACTGAgaagtcatatatatttttatagagtgTTCTAAACttacagaatttattttaatatgctttgtggcttttaaaatctcacttttct---------------------------------------atataaattatatccTAAACATAGtccctaa-ttttttgttttgctatattttattcttactgTTATCATGTTATCTGtttaaagttat--ttatattttagggtGGGCACTCTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9914021 228 - 75148670 CTATGTTCTGGTTTTGGATA-C-GTTTGCTGAGAAGTCATATATATTTTTATAGAGTGTTCTAAACTTACAGAATTTATTTTAATATGCTTTGTGGCTTTTAAAATCTCACTTTTCT---------------------------------------ATATAAATTATATCCTAAACATAGTCCTTAA-TTTTTTGTTTtgctatattttattcttactgttatcatgttatctgttTAAAGTTAT--TTATATTTTAGGGTGGGCACTCTTT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99504328 263 + 122082543 CTGTGTTCT-GCTTTGAATATC-ATTTGCAGGGAAG----AAATATTTTCATAGTATGTTTTAAATGTAGAGAATTCACTTCAATGACTTTGGTGCCTTTTGAGTtctctctctctctctctctctctctctctctctctctctcCCCCCTCCCTGATGTAG---ATATCTTACATATAGCTCCCAACTTCTTTATTTTGATATATTTTATTCTCACCTTTACTGTGTTACCTGTTCAGAACTGTAATTATATTTTGGGATAAGCACAATTT i mm10.chr11 I 1054 C 0 s canFam3.chr9 39331621 203 - 61074082 CTGTTTTCTGGCTTCAGATA-CAGTATGCTGGGAAATTATATAT-TTTTTAAAGAATGCTCTAAACTTATACA--TTATTTCAGTATCCTTGGTATCTTTTAAATTCTCACTTTTCA-----------------------------------------ATTAATTATAT-------------CTCAA-TTT----CTTTGGTATATTTCATTCTTACTCCTACTATATTGTCTGTTTAAAATTAT--TTATACTTTAGGATGGACACT---- i canFam3.chr9 C 0 C 0 e calJac3.chr5 112783331 63 + 159171411 I a score=51873.000000 s hg38.chr17_JH159146v1_alt 97106 21 + 278131 CCACCCTAGCAGTGAACTATA s panTro4.chr17 66217707 21 - 82630442 CCACCCTAGCAGTGAACTATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24749736 21 - 73212453 CCACCCTAGCAGTGAACTATG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47967295 21 - 81552678 CCACCCTAGCAGTGAACTATG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53078706 21 + 80904711 CCACCCTAGCAGTAAACTATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52601552 21 + 80997621 CCACCCTAGCAGTAAACTATG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47646166 21 + 74645514 CCACCCTAGCAGTAAACTATG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9914249 21 - 75148670 CCACCCTAGCAGTAAACTATG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46387912 21 - 159171411 CCTTCCTAGGGAAGAAATATT i calJac3.chr5 T 18020 C 0 s mm10.chr11 99504591 20 + 122082543 -GCCTCTTCGAAAAAGCTACC i mm10.chr11 C 0 C 0 s canFam3.chr9 39331824 5 - 61074082 ----------------TTATA i canFam3.chr9 C 0 C 0 a score=5984.000000 s hg38.chr17_JH159146v1_alt 97127 3 + 278131 AGT s ponAbe2.chr17 24749757 3 - 73212453 AGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47967316 3 - 81552678 AGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53078727 3 + 80904711 AGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52601573 3 + 80997621 AGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47646187 3 + 74645514 AGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9914270 3 - 75148670 AGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46387933 3 - 159171411 AGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99504611 2 + 122082543 AG- i mm10.chr11 C 0 C 0 e canFam3.chr9 39331829 0 - 61074082 C e panTro4.chr17 66217728 0 - 82630442 C a score=45413.000000 s hg38.chr17_JH159146v1_alt 97130 47 + 278131 TCACTGCTCCACTCTACCTTAAGCCCCAGTTATTATAACTTGATGTG s ponAbe2.chr17 24749760 44 - 73212453 TCACTGATCCATTCTACCTTAAGCCCCAGTTAT---AACACGATGTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47967319 47 - 81552678 TCACTGCTGCACTCTACCTTAAGCCCCAGTTATTATAACATGATGTG i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 28395975 47 - 80997621 TCACTGCTCTACTCTACCTTAAACCCCAGTTATTATAACATCATGCG i macFas5.chr16 T 42294 n 0 s papAnu2.chr16 26999254 47 - 74645514 TCACTGCTCTACTCTACCTTAAATCCCAGTTATTATAACATCATGCG i papAnu2.chr16 T 41828 T 76564 s calJac3.chr5 46387936 39 - 159171411 TCACTGCTCCACTCTACCTAAAGTCCCAGTTATTATAAC-------- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39331829 38 - 61074082 ----TTTTCCACTCTGACAAAATTACCAG-----AGAATTCTGTATG i canFam3.chr9 C 0 C 0 e mm10.chr11 99504613 0 + 122082543 C e chlSab2.chr16 9914273 0 - 75148670 C e rheMac3.chr16 53078730 0 + 80904711 C e panTro4.chr17 66217728 0 - 82630442 C a score=7049.000000 s hg38.chr17_JH159146v1_alt 97177 3 + 278131 AAC s ponAbe2.chr17 24749804 3 - 73212453 AAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47967366 3 - 81552678 AAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53078730 3 + 80904711 AAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52601576 3 + 80997621 AAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47646190 3 + 74645514 AAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9914273 3 - 75148670 AAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46387975 2 - 159171411 -AC i calJac3.chr5 C 0 n 0 e canFam3.chr9 39331867 0 - 61074082 C e mm10.chr11 99504613 0 + 122082543 C e panTro4.chr17 66217728 0 - 82630442 C a score=180912.000000 s hg38.chr17_JH159146v1_alt 97180 73 + 278131 AATGTAACATATGGAAAGT--------------TCACATCGTGTTATAATAACTGGGGTTTAAGGTAGAGTGGAG--CAGTGAACTCAT----- s ponAbe2.chr17 24749807 73 - 73212453 AATGTAACATATGGAATGT--------------TCACATAGTGTTATAATAACTGGGGTTTAAGGTAGAGTGGAG--CGGTGAACTCAT----- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47967369 73 - 81552678 AATGTAACATATGGAATGT--------------TCACATTGTGTTATAATAACTGGGGTTTAAGGTGGAGTGGAG--CAGTGAACTAAT----- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53078733 73 + 80904711 AATGTAACACATGGAATGT--------------TCGCATGATGTTATAATAACTGGGGTTTAAGGTAGAGTAGAG--CAGTGAACTCAT----- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52601579 73 + 80997621 AATGTAACACATGGAATGT--------------TCGCATGATGTTATAATAACTGGGGTTTAAGGTAGAGTAGAG--CAGTGAACTCAT----- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47646193 73 + 74645514 AATGTAACACATGGAATGT--------------TCGCATGATGTTATAATAACTGGGATTTAAGGTAGAGTAGAG--CAGTGAACTCAT----- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9914276 73 - 75148670 AATGTAACACATGGAATGT--------------TCGCATGATGTTATAATAACTGGGGTTTAAGGTAGAGTAGAG--CAGTGAACTCAT----- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112783394 87 + 159171411 AATGTGACATATGGGATGTGAGCATTCTGTATGTTACATTGTGTTATAATAACTGGGACTTTAGGTAGAGTGGAG--CAGTGAACTAAT----- i calJac3.chr5 I 63 C 0 s mm10.chr11 99504613 57 + 122082543 AACATCGTATATGTTATGC--------------T------GTGTTACAAC------------AGGTAGGGTGGTGCACAATAAACCAGT----- i mm10.chr11 C 0 I 5 s canFam3.chr9 39331867 61 - 61074082 ---------------------------------TTATGTTGTGTTATAATAACTGGGGTTTAAGGTAGCATGAAGCACAGTGAACCAGTCTTAC i canFam3.chr9 C 0 C 0 e panTro4.chr17 66217728 0 - 82630442 C a score=326122.000000 s hg38.chr17_JH159146v1_alt 97253 98 + 278131 AGTTCTTCCCTAGGAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTTTGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTAGC-----------------------------------------------------------------------TCT s panTro4.chr17 66217728 98 - 82630442 AGTTCTTCCCTAGGAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTTCGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTAGC-----------------------------------------------------------------------TCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24749880 98 - 73212453 AGTTCTTCCCTAGGAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTTTGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTATC-----------------------------------------------------------------------TCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47967442 98 - 81552678 AGTTCTTCCCTAGGAAGTCTTGAG----------TTTCCAA--------ATACAGGTGAAAGCCATTTCCAAATGCCTTCGGTTAGGTCA-CA-------------CTCTGGTC-------------------------TTTTCCTTCTATC-----------------------------------------------------------------------TCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53078806 98 + 80904711 AGTTCTTCCCTAGAAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTGCGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTATC-----------------------------------------------------------------------TCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52601652 98 + 80997621 AGTTCTTCCCTAGAAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTGCGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTATC-----------------------------------------------------------------------TCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47646266 98 + 74645514 AGTTCTTCCCTAGGAAGACTTGAG----------TTTCCAA--------GTACAGGTAAAAGCCATTTCCAAATGCCTGTGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCCTTCTATC-----------------------------------------------------------------------TCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9914349 98 - 75148670 AGTTCTTCCCTAGAAAGGCTTGAG----------TTTCCAA--------ATACAGGTAAAAGCCATTTCCAAATGCCTGTGGTTAGGTCC-CA-------------CTCTGGTC-------------------------TTTTCTTTCTATC-----------------------------------------------------------------------TCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112783481 169 + 159171411 ATTTCTTCCCTAGGAAGGCTTGAG----------TTTCTAA--------AGGCAGGTAAAAGCCATTTCCAAATGCCTTTGGTTAGGTCC-CA-------------CTCTGATC-------------------------TTTTCCTTCTATCTTTGTAATAATTTATTCCCTAATTGACAGAGAGAGTGATGAAGGGTCCACATATCCCCTTTCATCACAATTTCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99504675 142 + 122082543 TGCTCTTCCTTGGG--GACTTGGA----------TTTTCCATGCTTTTTGAGCAAGTGACAGCCATTCCCACATTCCTCT-CTTAGATCTACAGTTTCCTTCTAATCTCCGGTCTCTGTCATTCTTAAATGGTTATGATTTTTTCTTTTCTT-----------------------------------------------------------------------TCT i mm10.chr11 I 5 C 0 s canFam3.chr9 39331928 108 - 61074082 TGTTCCTCCCTAGGATGGCTTGAATGCATCCTGTTTCCTTT--------GAGCAAGTGAAAGCCATTCCCAGACACCTTTTATTAGATCT-TA-------------CTCCCATT-------------------------CTTTCTTTCCATC-----------------------------------------------------------------------TCT i canFam3.chr9 C 0 I 165 a score=146376.000000 s hg38.chr17_JH159146v1_alt 97351 58 + 278131 GTCAA----------------TTAGGGAATA------------------------------------------------------------------------------AATTATTGCAAAGTGTATATTGG---TT------AAAAAAAAAAA---------GGAGGAA s panTro4.chr17 66217826 59 - 82630442 GTCAA----------------TTAGGGAATA------------------------------------------------------------------------------AATTATTGCAAAGTGTATATTGG---TT------AAAAAAAAAAAA--------GGAGGAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24749978 58 - 73212453 GTCAA----------------TTAGGGAATA------------------------------------------------------------------------------AATTATTGCAAAGTATATATTGG---TT------TAAAAAAAAAA---------GGAGGAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47967540 57 - 81552678 GTCAA----------------TTAGGGAATA------------------------------------------------------------------------------AATTATTGCAAAGTGTATATTGG---TT------AAAAAAAAAAA----------GAGGAA i nomLeu3.chr19 C 0 I 5561 s rheMac3.chr16 53078904 58 + 80904711 GTCAA----------------TTAGGGGATA------------------------------------------------------------------------------AATTATTGCAAGGTATATATTGG---TT------TAAAAAAAAAA---------GGGGGAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52601750 58 + 80997621 GTCAA----------------TTAGGGGATA------------------------------------------------------------------------------AATTATTGCAAGGTATATATTGG---TT------AAAAAAAAAAG---------GGGGGAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47646364 64 + 74645514 GTCAA----------------TTAGGGGATA------------------------------------------------------------------------------AATTATTGCAAGGTAtatattgg---tttaaaaaaaaaaaaaaaa---------gggggaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9914447 67 - 75148670 GTCAA----------------TTAGGGGATA------------------------------------------------------------------------------AATTATTGCAAAGTGTATATTGG---TT------AAAAAAAAAAAAAGGGAGTGGGGGGAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112783650 57 + 159171411 GTCAA----------------TTAGGCAATA------------------------------------------------------------------------------AATTATTGCAAAGTATATATTGG---TT------AAAAAAAAGAA----------GAGGAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99504817 145 + 122082543 CTCCAAGAATTGTAAGAGAGGTCAGGGGATAACAGCCAAGACTGACCTTGGGATAAACTTCATTCATCTAATTGTACCTTTTGTTTTGCCCCAAGATTACTTAGCAATCAGTTATTTTGAAGTAGATATTGTGACCT------AAAAGGAA------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 39332201 50 - 61074082 GTCAA----------------TTAGTGAATA------------------------------------------------------------------------------AATAATTGAAAAATGTATGTTGA---TA------AAAAAAAGAa----------------- i canFam3.chr9 I 165 C 0 a score=2460054.000000 s hg38.chr17_JH159146v1_alt 97409 673 + 278131 GAGGCAG-TTTTTcatgacggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctgtggcactaactatctgtgtga----ctg----gctgtgaacctctcgtgcctcactttcttcatctgcaaaatgggtagttgtatagcaaatgcacatagagaacacttaacac----tttggcacattggaagcactcagtaaatgtta---attgttattATTGTTGCTCTAAAGAGATGA-CCCCACAAGGTTATGGAGTATGTTTACATCTTCAAACTATTAGTTAAGATATAGCCTTAAACATATGCTCTCCTTATGTCAGA-ATGTTCCCTGAGGGTTGAAGTACAACCGGGAAGCTTGATTGGTTCGTGAATTTAAACACTCGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGGCTG---------------------TCTCTTT-TCCCCTCCCTCTCTCTGTTTCCTTT-------------------------------------------------------------------------------------------------------------GGtgtgggaggaagaataatg--gtccccgaaggatgcccaggtcctaatacccagag-cctgtgaatagctgatgttacttggcaaaaaggtaattaaagtcacaagtagaattaaggttgctaatcagctggccttaaaatagggagagtatcctgaattattcaggtgggcccaagataatcataatgtctttaaaa s panTro4.chr17 66217885 673 - 82630442 GAGGcag-tttttcatgacggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctgtggcactaactatctgtgtga----ctg----gctgtgaacctctcgtgcctcactttcttcatctgcaaaatgggtagttgtatagcaaatgcacatagagaacacttaacac----tttggcacattggaagcactcagtaaatgtta---attgttattATTGTTGCTCTAAAGAGATGA-CCCCACAAGGTTATGGAGTATGTTTACGTCTTCAAACTATTAGTTAAGATATAGCCTTAAACATATGCTCTCCTTATGTCAGA-ATGTTCCCTGAGGGTTGAAGTACAACCGGGAAGCTTGATTGGTTCGTGAATTTAAACACTCGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGGCTG---------------------TCTCTTT-TCCCCTCCCTCTCTCTGTTTCCTTT-------------------------------------------------------------------------------------------------------------GGtgtgggaggaagaataatg--gtccccgaaggatgcccaggtcctaatacacagag-cctgtgaatagctgatgttacttggcaaaaaggtaattaaagtcacaaatagaattaaggttgctaatcagctggccttaaaatagggagagtatcctgaattattcaggtgggcccaagataatcataatgtctttaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24750036 660 - 73212453 GAGGcag-tttttcatgatggttcaaagtgcaggatttggagtcccatggtcctgggtgtgaagcctggctctggcactaactatctgtgtgact--ctg----gctatgaacctctcgtgcctcactttcttcatctgcaaaatgagtagttgtatagcaaatgcacatagataacacttaacac----tttggcacattggaagcactgagtaaatgtta---attgttattATTGTTGCTATAAAGAGATGA-CCCCACAAGGTTATGGAGTATGTTTACATCTTCAAACTATTAGTTAAGATATAGCCTTAAACATATGTTCTCCTTATGTCAGA-ATGTTCCCTGAGGATTGAAGTACAACAGGGAAGCTTGATTGGTTCGTGAATTTAAACACTTGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGGCTG---------------------TCTCTTT-TCCCCTCCCTCTCTCTGTTTCCTTT-------------------------------------------------------------------------------------------------------------GGtgtgggaggaagaataatg--gtccctgaaagatgcccag---------------g-cctgtgaatagctgatgttacttggcaaaaaggtaattaaagttacaaatagaattaaggttgctaatcagctggccttaaaatagggagagtatcctgaattattcaagtgggcccaagataatcataatgtctttaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47973158 669 - 81552678 GAGGCAT-TTTTTcatgatggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctctggc----actatctatgtgact--ctg----gctatgaacctctcatgcctcactttcttcatctgcaaaatgggtagttaaatagcaaatgcacatagagaacacttaacac----tttagcacattggaagcacccagtaaatgtca---attgttattATTGTTGCTATAAAAAGATGA-CCCCAGAAGGTTATGGAGCATGTTTACATCTTCAAACTATTAGTTAAGATATAGCCTTAAACATATGCTCTCCTTATGTCAG---TGTTCCCTGAGGGTTGAAGTACAACAGGGAAGCTTGATTGGTTCGTGAATTTAAACACTCGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGGCTG---------------------TCTCTTT-TCCCCTCCCTCTCTCTGTTTCCTTT-------------------------------------------------------------------------------------------------------------GGtgtgggaggcagaataatg--gtccccgaaagatgcccaggtcctaatacccagag-cctgtgaatagttgatgttacttggcaaaaaggtaattaaagtcacaaatagaattaaggttgctaatcagctggccttaaaatagggagagtatcctgaattattcaagtgggcccaagataatcataatgtctttaaaa i nomLeu3.chr19 I 5561 C 0 s rheMac3.chr16 53078962 670 + 80904711 GAGacag-tttttcatgatggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctctggc----actatctgtgtgact--ctg----gctatgaacctctcatgcctcactttcttcatctgtaaaacgggtagttgtatagcaaatgcacttagagaacacttaacac----ttcggtacattggaagcactcagtaaatgtta---attgttattATTGTTGCTATAAAAAGATGA-CCCCACAAGGTTAAGGAATATGTTTACATCTTCAAATTATTAGTTAAGATATAGCCTTCAACATACACTCTCCTTATGTCAGA-GTGTTCCCTGAGGGTTGAAGTACAACA-GGAAGCTTGATTGGTTGGTAAATTTAAACACTTGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGACTG---------------------TCTCTTT-TCCCATCCCTCTCTCTGTTTCCTTC-------------------------------------------------------------------------------------------------------------GGtgtaggaggcagaataatg--gtctcctaaagatgcccaggttttaatacccagag-cctgtgaatagccgatgttacttggcaaaaaggtaattaaggtcacaaatagaattaaggttgctaatcaactggccttaaaattgggagagtatcctgaattattcaagtggacccaagataatcataatgtctttaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52601808 670 + 80997621 GAGacag-tttttcatgatggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctctggc----actatctgtgtgact--ctg----gctatgaacctctcatgcctcactttcttcatctgtaaaacgggTAGTTGTATAGCAAATGCACTTAGAGAACACTTAACAC----TTCggtacattggaagcactcagtaaatgtta---attgttattATTGTTGCTATAAAAAGATGA-CCCCACAAGGTTAAGGAATATGTTTACATCTTCAAATTATTAGTTAAGATATAGCCTTAAACATACACTCTCCTTATGTCAGA-GTGTTCCCTGAGGGTTGAAGTACAACA-GGAAGCTTGATTGGTTGGTAAATTTAAACACTTGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGACTG---------------------TCTCTTT-TCCCATCCCTCTCTCTGTTTCCTTC-------------------------------------------------------------------------------------------------------------GGtgtagggggcagaataatg--gtctcctaaagatgcccaggttttaatacccagag-cctgtgaatagccgatgttacttggcaaaaaggtaattaaggtcacaaatagaattaaggttgctaatcaactggccttaaaattgggagagtatcctgaattattcaagtggacccaagataatcataatgtctttaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47646428 670 + 74645514 gagACAG-TTTTTCATGACGGTCAAAAGTGCAGGATTTGGAGTCCCATGGTCCTGGGTGTGAATCCTGGCTCTGGC----ACTATCTGTGTGACT--CTG----GCTATGAACCTCTCatgcctcactttcttcatctgtaaaatgggtagtTGTATAGCAAATGCACTTAGAGAACACTTAACAC----TTCGGTACATTggaagcactcagtaaatgtta---attgttattattgttgctaTAAAAAGATGA-CCCCACAAGGTTAAGGAGTATGTTTAAATCTTCAAATTATTAGTTAAGATATAGCCTTAAACATACACTCTCCTTATGTCAGA-GCGTTCCCTGAGGGTTGAAGTACAACA-GGAAGCTTGATTGGTTGGTAAATTTAAACACTCGTAACTTTATTGCT-TA---------C---------TCCagttttggttttggggttttagAGAGATAATACATGGACTG---------------------TCTCTTT-TCCCAtccctctctctgtttccttC-------------------------------------------------------------------------------------------------------------GGTGTAGGaggcagaataatg--gtctccTAAAGATGCCCAGGTTCTAATACCCAGAG-CCTGTGAATAGCCGATGTTACTTGGCAAAAAGGTAATTAAGGTCACAAatagaattaaggttgctaatcaacTGGCCTTAAAATTGGGAGAGTATCCTGAATTATTCAAGTGGACCCAAGATAATCATAATGTCCTTAAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9914514 670 - 75148670 GAGGCAG-TTTTTcatgacggttaaaagtgcaggatttggagtcccatggtcctgggtgtgaatcctggctctggc----actatctgtgtgact--ctg----gctatgaacctctcatgcctcactttcttcatctgtaaaatgggTAGTTGTATAGCAAATGCACTTAGAGAACACTTAACAC----TTCggtacattggaagcactcagtaaatgtta---attgttattATTGTTGCTATAAAAAGATGA-CCCCACAAGGTTAAGGAGTATGTTTACATCTTCAAATTATTAGTTAAGATATAGCCTTAAACATACACTCTCCTTATGTCAGA-GCGTTCCCTGAGGGTTGAAGTACAACA-GGAAGCTTGATTGGTTGGTAAATTTAAACACTCGTGACTTTATTGCT-TA---------C---------TCCAGTTTTGGTTTTGGGGTTTTAAAGAGATAATACATGGACTG---------------------TCTCTTT-TCCCATCCCTCTCTCTGTTTCCTTC-------------------------------------------------------------------------------------------------------------GGtgtaggaggcagaataatg--gtctcctaaagatgcccaggttctaatacccagag-cctgtgaatagccgatgttacttggcaaaaaggtaattaaggtcacaaatagaattaaggttgctaatcaactggccttaaaattgggagagtatcctgaattattcaagtggacccaagataatcataatgtctttaaaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112783707 682 + 159171411 GAGATAG-TTTTTcatcatggttaaaagtggagggtctggagtcccatggtcctgggtgtgaatcctggttctggc----actatctgtatgact--ctg----gctataaacctctcatgcctcaccttcttcatctgcaaaatgggtaattgtgtagcaaatgtacatggagaacacttaacgc----tttggcacattgcaagcactcagtaaatgttaattattattATTATTGTTGCTATAAAAAAATGA-CCCCACAAGGTTATGGAGTATGTTTACATCTTCAAACTATCAGCTAAGATATAGCCTTAAACATATACTCTCCTTATGCGTCA-GTG-TCCCTGAGGCTTGCAGTGCAACAGCGAAGCTTGATTGGTTGGTGAATTTAAACACCTGTGACTTTATGACT-TACACCTCAATC---------TCCAGTTTTGGTTTTGGGGTTTTAGAGAGATAATACATGGGCTG---------------------CCTCTTTCTCTCCTCCCTCTCTATATTTCCTTT-------------------------------------------------------------------------------------------------------------GGtgtgggaggcagaataatg--gccccctaatgatgcccaggtcctaatacccagag-cctgtgaataggcaatgttaattggc-aaaaggtaattaaggtcacaaatagatttaagtctgctaatcagctggctttaaaatagggagagtatcctgaattatttgagtgggcggaaggtaatcagaatgtctttaaaa i calJac3.chr5 C 0 C 0 s mm10.chr11 99504962 796 + 122082543 GAGGCAGATTTTGCCCAATGCTTGGAAATGCACAGTTGGGAGACCCACAGTCCTGGGACTGAATTTGAGCTCAGCC----ACTATCTGAATGACTGATGA----GTTAGGAGCCACTACTGCCTCGTGCTCTT----TGTAAAATGGGACACTGTTAGAAAAAaacacacggagaacacttagcct----tttggcacattgtaaatgctcaataaaggtta---attgttgttGTTGTTGCTATAAAAAGATGA-TCTCTAAAGGCTGTGGAATATGTTTACACCTGCAAACTATTAGTTATGATGTGGCCTTAAGCATGCTTTATCCTTGTATTAGCTGTGGTCCCTGGGGCTTGAAGGACTGCATGGAAACATGATTGGTCAGAGGGTTCAAGCACACATGTCTTCATCACTATA---------CATAACAGTATTCAGTTTGGATGCTGGTGTTTTAGAGAGGTAACATGAGGTCTTGActtcccttcccttccctcccctcctt-tcctctcccttcccctctcccctcctctccttttctctccccttttttcccttcacccctctcctcttctctcctttcatctactctcttcctctttcccttcccctcATTTGGTTTA-TTATAAGCAAGTGTAAGtgtagtaggcagactccta--cccactcccagctgtccacattataatacccagag-cctgtaaatgggatgtattatgtggc-aaaggggaattagagttttagatagaattaaggttcataatcaactggcctttgaatt---agattatcctcggtcatttagatgggcc----agcatca-----tctctaat- i mm10.chr11 C 0 C 0 s canFam3.chr9 39332251 711 - 61074082 gaggcag-ttttgcatgatggttaaaagtgcaggatctgaagtcacacagtcctgggtttgaatactggctctgacactaactctccatgaaact--ctggtaagttataaatgtctcttgcctgaggctcctca-----gagatgagtgggtgcgtaggaaatgcacatc-agaacactgaacactttgtttggtacattggaaatgctcagtaagtgtta---attgctgttattGTTGCTATAAAAAGGTGACCCCCAGAAGGTTATGGAGTGTGTTTACATCTTCAAACTATTAGTTAAGGTATAAGCCTAAGTATATACTATCTTTACATCACCTGTGTTCCCTGAGGCTTGCAGTACAATATGAAAACGTGATTGGTTGGTAGATTTAAACACACATGACTTTGTCACTGTATGCATCAAGC---------TCCAGTTTGGGTCTTGGTGTTTTATGGAGATAATACATGAAAtc---------------------tctctct-ctctctctctctctctctctctctc------------------------------------------------------------------------tctTATTTTTCTTTTGGTTTAGTTGTAGGAG------AGtgtaacaggcagaatcacaccctcccctcaccatgtctgtcccctaatatctggaaccctgtgaatatgttgtggcacatggcaatgggggagttaatggtgcagacagagttaaggttgctaataagctggccttaaattggggagattatcttgaatgattcaggtggggct------------gtgtctttagaa i canFam3.chr9 C 0 C 0 a score=35153.000000 s hg38.chr17_JH159146v1_alt 98082 12 + 278131 gtggaagagggg s panTro4.chr17 66218558 12 - 82630442 gtggaagaggtg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24750696 12 - 73212453 gtggaagagggg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47973827 12 - 81552678 gtggaagagggg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53079632 12 + 80904711 gtgtaagagaag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52602478 12 + 80997621 gtgtaagagaag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47647098 12 + 74645514 GTGTAAGagaag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9915184 12 - 75148670 gtgtaagagaag i chlSab2.chr16 C 0 C 0 s mm10.chr11 99505758 12 + 122082543 gttgaagggggg i mm10.chr11 C 0 I 1033 s canFam3.chr9 39332962 12 - 61074082 gtggaagaggga i canFam3.chr9 C 0 C 0 e calJac3.chr5 112784389 0 + 159171411 C a score=17874.000000 s hg38.chr17_JH159146v1_alt 98094 8 + 278131 ctgggcac s panTro4.chr17 66218570 8 - 82630442 ctgggcac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24750708 8 - 73212453 ctgggcac i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47973839 8 - 81552678 ctgggcac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53079644 8 + 80904711 ctgggcat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52602490 8 + 80997621 ctgggcat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47647110 8 + 74645514 cagggcat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9915196 8 - 75148670 ttggacat i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39332974 8 - 61074082 ggggacac i canFam3.chr9 C 0 I 161 e mm10.chr11 99505770 1033 + 122082543 I e calJac3.chr5 112784389 0 + 159171411 C a score=671975.000000 s hg38.chr17_JH159146v1_alt 98102 328 + 278131 ggtggctcacgcttgtaatctcagcactttaggaggccgaggtgggtggatcacgaggtcaagggttcgagaccagcctgaccaacatggtgaaa-ccctgtctctactaaacgaacgaacaaacaaacaaacaaaaaaccccacaaaaattagctgggcatggtggcacatgcctgcatgcctgcatgcctgcacacctgtaatcccagctactccggaggctgaggcaggagaatggcttgaacctgggaggtggaggttgcagtgagccaagatcgcgtcactgcactccagcctgggtgacagagcaagactccgtctc------------aaaaaa s panTro4.chr17 66218578 316 - 82630442 ggtggctcacgcctgtaatcccagcactttaggaggccaaggtgggtggatcacgaggtcaagggttcgagaccagcctgaccaacatggtgaaa-ccccgtctctactaaacgaac----aaacaaacaaacaaaaaaccccacaaaaagtagctgggcatggtggcacatgcctgcatgcctgca--------cacctgtaatcccagctactccggaggctgaggcaggagaatggcttgaacccgggaggcggaggttgcagtgagccaagatcgcgtcactgcactccagcctgggtgacagagcgagactccgtctc------------aaaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24750716 313 - 73212453 ggtggctcacgcctgtaatcccagcactttaggaggctgaggtgggtggatcacgaggtcaagggttcgagaccagcctgaccaacatggtgaaa-ccccatctctactaaacgaac--------aaacaaacaaaaaaccccacaaaaattagctgggcatggtggcacacgcctgcatgcctgca--------cacctgtaatcccagctactccggaggctgaggcaggagaatggcttgaacccaggaggcggaggttgcagtgagccaagatcacgtcactgcactccaacctgggcgacagagcgagactccgtctc-----------aaaaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47973847 309 - 81552678 cgtggctcacacctgtaatccgagcactttaggaggccgaggtgggcggatcacaaggtcaagggttcgagaccagcctgatcaagatggtgaaacccccgtctctactaaacgaac------------aaacaaaaaaccccacaaaaattagctgggcatggtggcacacgcctgcatgcctgca--------cacttgtaatcccagctactccggaggctgaggcaggagaatggcttgaacccaggaggtggaggttgcagtgagccaagatcgcgtcactgcgctccagcctgggcgacagagcgagactccgtctc------------aaaaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53079652 300 + 80904711 ggtggctcacgtctgtaatcccagcgctttaggaggtcgaggcaggtggatcatgaggtcaagggttcgagaccagcctgaccaaaatgatgaaa-ccccatctctactaaacaaac------------aaacaaacaaacccacaaaaattagctgggcatggtggcacatgcctgcatgcctgta----------------atcccagctactccggaggctaaggcaggagaatggcatgaacccgggaagtggaggttgcagtgagccaagatcacaccactacactccagcctgtgcgacagagggagactccatctc------------aaaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52602498 308 + 80997621 ggtggctcacgtctgtaatcccagcgctttaggaggtcgaggcaggtggatcatgaggtcaagggttcgagaccagcctgaccaaaatgatgaaa-ccccatctctactaaacaaac------------aaacaaacaaacccacaaaaattagctgggcatggtggcacatgcctgcatgcctgta----------------atcccagctactccggaggctaaggcaggagaatggcatgaacccaggaagtggaggttgcagtgagccaagatcacaccactacactccagcctgtgcgacagagggagactacatctc----aaaaaaaaaaaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47647118 304 + 74645514 ggtggctcacatctgtaatcccagcgctttaggaggttgaggcaggtggatcacgacgtcaagggttcgagaccagcctgaccaacatgatgaaa-ccccatctctact--------------------aaacaaacaaacccacaaaaattagctgggcatggtggcacacgcctgcatgcctgca----------------atcccagctactccggaggctaaggcaggagaatggcatgaacccaggaagcggaggttgcagtgagccaagatcacaccactacactccagcctgtgcgacagagggagactccatctcaaaaaaaaaaaaaaaaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9915204 308 - 75148670 agtggctcacgtctgtaatcccagcgctttaggaggtcgaggcaggtggatcatgaggtcaagggttcgagaccagcctgaccaacatgatgaaa-ccccatctctact----aaac------------aaacaaacaaacccacaaaaattagctgggcatggtggcacacgcctgcatacctgta----------------atcccagctactctggaggctaaggcaggagaatggcatgaacctgggaagcggaggttgcagtgagccaagatcacaccacttcactccagcctgtgcgacagagggagactccatctcaaaaaaaaaaaaaaaaaa i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39332982 161 - 61074082 I e mm10.chr11 99505770 1033 + 122082543 I e calJac3.chr5 112784389 0 + 159171411 C a score=34310.000000 s hg38.chr17_JH159146v1_alt 98430 12 + 278131 aaaaaaaaaaag s panTro4.chr17 66218894 12 - 82630442 aaaaaaaaaacg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24751029 12 - 73212453 aaaaaaaaaaag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47974156 12 - 81552678 aaaaaaaaaaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53079952 12 + 80904711 aaaaaaaaaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52602806 12 + 80997621 aaaaaaaaaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47647422 12 + 74645514 aaaaaaaaaaag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9915512 12 - 75148670 aaaaaaaaaaaa i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39333143 12 - 61074082 aaaaaaaaagaa i canFam3.chr9 I 161 C 0 e mm10.chr11 99505770 1033 + 122082543 I e calJac3.chr5 112784389 0 + 159171411 C a score=1158736.000000 s hg38.chr17_JH159146v1_alt 98442 374 + 278131 gtggaagagggaagta---gaagattcagtcagtgttggcgaaggagatgtgatgaaggcagagttaagggtgacgagatggctgatggtgaagatggaaatggtggacaagcccaggaatgtgagcagcctctgaaagctggaaaagtttggcaataaaacaaat---------cccccc------caggacct---------------------ccaacactttgattttagtacactgagtcccaagtcagatttctgaaatagagaacagtaagatagtacattcgtg---ttttg-tgttattttgagccatgaaatgcatgtcactttgttacagtggcagtag------aaCATCGT-------A---GTGTCTGTGTGTTTGTGGGGGAAACAT---------------CCAGTAGGAACTCTGGTGATGGATTTTTGCT s panTro4.chr17 66218906 374 - 82630442 gtggaagagggaagta---gaaggttcagtcagtgttggcgaaggagatgtgatgaaggcagagttaagggtgacgagatggctgatggtgaagatggaagtggtggacaagcccaggaatgtgggcagcctctgaaagctggaaaagtttggcaataaaacaaat---------cccccc------caggacct---------------------ccaacactttgattttagtacactgagtcccaagtcagatttctgaaatagagaacagtaagatagtaaattcgtg---ttttg-tgttattttgagccatgaaatgcatgtcactttgttacagtggcagtag------aaCATCGT-------A---GTGTGTGTGTGTTTGTGGGGGAAACAT---------------CCAGTAGGAACTCTGGTGATGGATTTTTGCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24751041 372 - 73212453 gtggaagagggaagta---gaagattcagtcagtgttggcgaaggagatgtgatgaaggcagagttaagggtgacaagatggctgatggtgaagacggaagtggtggacaagcccaggaatgtgggcagcctctgaaagctggaaaagtttggcaagaaaacaaat---------cccccc------caggacct---------------------ccaacactttgattttagtacattgagtcccaagtcagatttctgaaatagagaacagtaagacagtaaattcgtg-----tta-ttttgtgttgagtcacgaaatgcatgttactttgttacagtggcagtag------aaCATCGT-------A---GTGTGTGTGTGTTTGTGGGGGAAACAT---------------CCAGTAGGAACTCTGGTGATAGATTTTTGCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47974168 377 - 81552678 gtggaagagggaagta---gaagattcagtcagtgttggcaaaggagatgtgatgaaggcagagttaagggtgacgagatcgctgatggtgaagatggaagtggtggacaagcccaggaatgtgggcagcctctgaaagctggaaaagcttggcaagaaaacaaat---------cccccc------caggaccc---------------------ccaacactttgattttagtacattgagtcccaagctagatttctgaaatagagaacagtaagatagtacattcgtgttattctg-tgttattttgagccatggaatgcatgttactttgttacagtggcagtag------aaCATCGT-------A---GTGCGTGTGTGTTTGTGGGGGAAACAT---------------GCAGTAGGAACTCTGGTGATAGATTTTTGCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53079964 378 + 80904711 gtggaagagggaagta---gaagattcagtcagtgttggcaaaggagatgtgatgaaggc--agttaagggtgacgaggtcactgatggtgaagacggaagtggtggacaagcccaggaatgtgggcagcctctgaaagctggaaaagtttggcaagaaaacaaat---------ccccccagccg-caggacct---------------------ccaacacttggattttagtacattgagtcccaagtcagacttctgaaatagagaacagtaagatagtaaatttgtg---ttatgttgttattttgagccatgaaatgcatgttactttgttacagtggcagtag------aaCATCGT-------A---GTGCATGTGTGTTTGTGGGGGAAACAT---------------CCAATAGGAACTCTGGTGATAGATTTTTGCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52602818 378 + 80997621 gtggaagagggaagta---gaagattcagtcagtgttggcaaaggagatgtgatgaaggc--agttaagggtgacgaggtcgctgatggtgaagatggaagtggtggacaagcccaggaatgtgggcagcctctgaaagctggaaaagtttggcaagaaaacaaat---------ccccccagccg-caggacct---------------------ccaacacttggattttagtacattgagtcccaagtcagacttctgaaatagagaacagtaagatagtaaatttgtg---ttatgttgttattttgagccatgaaatgcatgttactttgttacagtggcagtag------aaCATCGT-------A---GTGCATGTGTGTTTGTGGGGGAAACAT---------------CCAATAGGAACTCTGGTGATAGATTTTTGCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47647434 385 + 74645514 gtggaagagGGAAGTAGTCGAAGATTCAGTCAGTGTTGGCGAAGGAGGTGTGATGAAGGC--AGTTAAGGGTGACGAGGTCGCTGATGGTGAAGATGGAAGTGGTGGACAAGCccaggaatgtgggcagcctctgaAAGCTGGAAAAGTTTGGCAAGAAAACAAAT-----ccccccccccAACCG-CAGGACCT---------------------CCAACACTTGGATTTTAGTACATTGAGTCCCAAGTCAGACTTCTGAAATAGAGAACAGTAAGGTAGTAAATTTGTG---TTATGTTGTTATTTTGAGCCATGAAATGCATGTTACTTTGTTACAGTGGCAGTAG------AACATCGT-------A---GTGCATGTGTGTTTgggggggAAACAT---------------CCAATAGGAACTCTGGTGATAGATTTTTGCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9915524 387 - 75148670 gtggaagagggaagta---gaagattcagtcagtgttggcgaaggagatgtgatgaaggc--agttaagggtgacaaggtcgctgatggtgaagatggaaggggtggacaagcccaggaacgtgggcagcctctgaaagctggaaaagtttggcaagaaaacaaatcctcccccctcccccgcccg-cagtacct---------------------ccaacacttggattttagtacattgagtcccaagtcagacttctgaaatagagaacagtaagatagtaaatttgtg---ttatgttgttattttgagccatgaaatgcatgttactttgttacagtggcagtag------aaCATCGT-------A---GTGCATGTGTGTTTGTGGGGGAAACAT---------------CCAATAGGAACTCTGGTGATAGATTTTTGCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112784389 370 + 159171411 gtggaagagagaggca---gaagattcagtcagtgctggcga---agatgtgatgaaggcagagt------tgacgagattgctgatggtgaaggtggaagcagcggacaaacccagaaacatgggcagcctctgaaagct-gaaaagtttggcaagaaaacaaat---------tccccccactatccgaacct---------------------ccaacactttgattttagtacactgagtcccaagtcagacttctgaaatagagaacagtaagatagtaaatttgtt-----------ttgtttcaagctgtgagatttatgtcgctttgttacagtggcagtag------aacattattataGCGA---AAGTGTGTGTGTTTGTGGGGGAAACAT---------------CCCATGGGAACTCTGGTAATCTATTTTTGCT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39333155 379 - 61074082 gtggaagagaaaggta---gaagag--agtccccatcagggaagga-atgtggtaaaggcagatttgtag-tgatgaggttgctggcttcaaaggtagaaggggaacctaagccaaagaatgtggg----------aggctggaa----tgggcaaggaaacaggt---------tctcctc-----tgggacctccaggaaggaacataggtcagccaataccttg-ttttagctcagtgggacctttgccagacttctgaaa----------taagataataaatttgtg-----------ttgttctgagccac----tctgtgcta-tttgttacagtggcaatggcagattaatataGT-------ACACGTGTGTGTGTGTGTGTgagagagagagagagagagagagaTACAAATAGGAACTCTAGTGATGGATTTTTGCT i canFam3.chr9 C 0 C 0 e mm10.chr11 99505770 1033 + 122082543 I a score=3600.000000 s hg38.chr17_JH159146v1_alt 98816 1 + 278131 G s panTro4.chr17 66219280 1 - 82630442 G i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24751413 1 - 73212453 G i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47974545 1 - 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53080342 1 + 80904711 G i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52603196 1 + 80997621 G i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47647819 1 + 74645514 G i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9915911 1 - 75148670 G i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112784759 1 + 159171411 G i calJac3.chr5 C 0 C 0 e canFam3.chr9 39333534 0 - 61074082 C e mm10.chr11 99505770 1033 + 122082543 I a score=1143847.000000 s hg38.chr17_JH159146v1_alt 98817 470 + 278131 AAGATTtgccaggtctgtcctgcagaccctggccgagcgtcggatgaagggagtactgacaacacaggcgtgcagtgtaagagcagctaggggtctgccggcacttagggccaaagaagagagcagctgcgaacagctgaagctgcttgcttttattcagtacagacataatgccgaaagcctggagcaaacacaatctgcgggtaattaacattattgttccccttttcagggagcagtcatgtgcacagattatcaaaggtcggtttctggacaacctaagtaaacaagcctgtttacgataaattcccctacacctccttgtacctactccttgccctctgcctcaggatcagagaacagctgccttcagcttattctcccctgaagctatgcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcctac s panTro4.chr17 66219281 470 - 82630442 AAGATTtgccaggtctgtcctgcagaccctggccgagcgtcggatgaagggagtactgacaacacaggcatgcagtgtaagagcagctaggggtctgctggcacttagggccaaagaagagagcagctgcgaacagctgaagctgcttgcttttattcagtacagacacgatgccgaaagcctggagcaaacacaatctgcgggtaattaacattattgttccccttttcagggagcagtcatgtgcacagattatcaaaggttggtttctggacaacctaagtaaacaagcctgtttacgataaattcccctacacctccttgtacctactccttgccctctgcctcaggatcagagaatagctgccttcagcttattctcccctgaagctatgcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcctac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24751414 470 - 73212453 AAGATTtgccaggtctgtcctgcagaccctggccgagcgtcggatgaagggagtactgacaacacaggcatgcagtgtaagagcagctaggggtctgccggcacttagggtcaaaggagagcgcagccgcgaacagctgaagctgcttgcttttattcagtacagacataatgccgaacgcctggagcaaacacaatctgcgggtaattaacattattgttccccttttcagggagcagtcatgtgcacagattatcaaaggtcggtttctggacaacctaagtaaacaagcctgtttacgataaattcccctacacttccttgtacctactccttgccctctgcctcaggatcagagaatagctgccttcagcttattctcccctgaagctatgcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcctgc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47974546 467 - 81552678 --GATTtgccaggtctgtcctgcagaccctggccgagcatcggatgaagggagtactgac-acacaggcatgcagtgtaagagcagctaggggtctgccggcacttagggccaaagaagagagcagccgcgaacagctgaagctgcttgcttttattcagtacagacataatgccgaaagcctggagcaaacacaatctgcgggtaattaacattattgttccccttttcagggagcagtcatgtgcacagattatcaaaggtcggtttctagacaacctaagtaaacaagcctgtttacgataaattcccctacacttccttgtacctactccttgccctctgcctcaggatcagagaacagctgccttcagcttattcttccctgaagctacgcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcctac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53080343 469 + 80904711 AAGATTtgccaggtctatcctgcagaccctggcagagtgttgaatgaaaggagtactgag-acacaggcatgcagtgtaagagcagctaggggtctgccggtacttagggccaaagaagagagcagctgtgaatagctgaagctgctcgcttttattcactacagacataatgctgaaagcctggagcaaacacaatctgcaggtaagtaacattatttttccccttttcagggaacagtcacatgcatggattatcaaaggtcagtttctggacaacctaagtaaacaagcctgtttatgataaattcccctgtacttccttttacctactccttgccctctgcctcaggatcagagaacagcttccttcaacttattctctcttgaagctaggcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcccgc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52603197 469 + 80997621 AAGATTtgccaggtctatcctgcagaccctggcagagtgttgaatgaaaggagtactgag-acacaggcatgcagtgtaagagcagctaggggtctgccggcacttagggccaaagaagagagcagctgtgaatagctgaagctgcttgcttttattcactacagacataatgctgaaagcctggagcaaacacaatctgcaggtaagtaacattatttttccccttttcagggaacagtcacatgcatggattatcaaaggtcagtttctggacaacctaagtaaacaaacctgtttatgataaattcccctgtacttccttttacctactccttgccctctgcctcaggatcagagaacagcttccttcaacttattctctcttgaagctaggcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctcccaccactctgaccaatctcccgc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47647820 469 + 74645514 AAGATTTGCCAGGTCTATCCTGCAGACCCTGGCTGAACGTTGAATGAAAGGAGTACTGAG-ACACAGGCATGCAGTGTAAGAGCAGCTAGGGGTCTGCTGGCACTTAGGGCCAAAGAAGAGAGCAGCAGCGAATAGCTGAagctgcttgcttttattcaCTACAGACATAATGCTGAAAGCCTGGAGCAAACACAATCTGCAGGTAAGTAACATTATTGTTCCCCTTTTCAGGGAACAGTCACATGCATGGATTATCAAAGGTCAGTTTCTGGACAACCTAAGTAAACAAGCCTGTTTATGATAAATTCCCCTGTACTTCCTTTTACCtactccttgccctctgcctcaggATCAGAGAACAGCTTCCTTCAACTTATTCTCTCTTGAAGCTAGGCAGAGCCTTCTGAACTTTCAGAAGGTTTGCATCCTTTCCCTATAGTTTCTCCCACCACTCTGACCAATCTCCCGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9915912 469 - 75148670 AAGATTtgccaggtctaccctgcagaccctggcagagtgttgaatgaaaggagtactgag-acacaggcatgcagtgtaagagcagctaggggtctgctggcacttagggccaaagaagagagcagctgtgaatagctgaagctgcttgcttttattcactacagacataatgctgaaagcctggagcaaacacaatctgcaggtaagtaacattattgttccccttttcagggaacagtcagatgcatggattatcaaaggtcggtttctggacaacctaagtaaacaagcctgtttatgataaattcccctgtacttccttttacctactccttgccttctgcctcaggatcagagaacagcttccttcaacttattctctcctgaagctaggcagagccttctgaactttcagaaggtttgcatcctttccctatagtttctccaaccactctgaccaatctcccgc i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39333534 0 - 61074082 C e mm10.chr11 99505770 1033 + 122082543 I e calJac3.chr5 112784760 0 + 159171411 C a score=3276.000000 s hg38.chr17_JH159146v1_alt 99287 1 + 278131 a s panTro4.chr17 66219751 1 - 82630442 a i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24751884 1 - 73212453 a i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47975013 1 - 81552678 a i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53080812 1 + 80904711 a i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52603666 1 + 80997621 a i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47648289 1 + 74645514 A i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9916381 1 - 75148670 a i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39333534 1 - 61074082 A i canFam3.chr9 C 0 C 0 e mm10.chr11 99505770 1033 + 122082543 I e calJac3.chr5 112784760 0 + 159171411 C a score=1257393.000000 s hg38.chr17_JH159146v1_alt 99288 363 + 278131 AAGATTAAATCAAGGTGAATAGAATGTGTTTTCCATGTGATTTATAAAACATAT-TTTCCATACACATACTTAGTCTAGATCTTTAATTATTAGCGTAACAGCAAAGATGGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGGTGGATTTTTAAATTTTCAAATTAATATATATGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTACGGAGAAGCATAAAATTACATAAAAGGAAGGCTGTTCCTGAAGATCCACGGC--ACGTGGGAACCATCATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAACCAAAGCCT s panTro4.chr17 66219752 363 - 82630442 AAGATTAAATCAAGGTGAATAGAATATGTTTTCCATGTGATTTATAAAACATAT-TTTCCATACACATACTTAGTCTAGATCTTTAATTATTAGCATAACAGCAAAGATGGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTGTAGGTGGatttttaaattttcaaattaatatatatGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTACGGAGAAGCATAAAATTACATAAAAGGAAGGCTATTCCTGAAGATCCACGGC--ACGTGGGAACCATCATTAGGGCAAATGTGAATATGTGTTTTTTATTTACAACCAAAGCCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24751885 363 - 73212453 AAGATTAAATCAAGGTGAATAGAGTATCTTTTCCATGTGATTTATAAAACATAT-TTTCCATACACATACTTAGTCTAGATCTTTAATTATTAGCATAACAGCAAAGATGGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGGTAGatttttaaattttcaaattaatatatatGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTACGGAGAAGCATAAAATTACATAAAAGGAAGGCTGTTCCTGAAGATCCACGGC--ACGTGAGAACCATCATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAACCAAAGCCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47975014 361 - 81552678 AGGATTAAATCAAGGTGAATAGAATATCTTTTTCATGTCATTTATAAAACATAT-TTTCCATACCCATGCTTAGTCTAGATCTTAAATTATTAGCATAACAGCAAAGATGGTTATAGTTACTATATTTCATAAACCCTAAAA-TGGCAAATTATAGGTGGATTTTTAAATTTTCAAATTAATATATATGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTACGGAGAAGCATACAATTACATAAAAGGGAGGCTGTTCCTGAAGATCCAGGGC--ACGTGGGAACCATCATTAGGGCAAATGTGAATA--TGTCTTTTATTTACTAGCAAAGCCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53080813 363 + 80904711 AAGATTAAATCAAGGTGAATAGAATATCTTTTCCATGTCATTTATAAAACATAT-TTTCCATACACATACTTGGTCTAGATCTTTAATTATTAGCATAACAGCAAAGACAGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGGTGGATTTTTAAATTTGCAAATTAATATATATGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTATGGAGAAGTACAAAATTACATAAAAGAAAGGCTGTTCCTGAAGATCCAGGGC--ACGTGCGAACTATTATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAATCAAAGGGT i rheMac3.chr16 C 0 I 35 s macFas5.chr16 52603667 363 + 80997621 AAGATTAAATCAAGGTGAATAGAATATCTTTTCCATGTCATTTATAAAACATAT-TTTCCATACACATACTTGGTCTAGATCTTTAATTATTAGCATAACAGCAAAGACAGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGGTGGATTTTTAAATTTGCAAATTAATATATATGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTATGGAGAAGTACAAAATTACATAAAAGAAAGGCTGTTCCTGAAGATCCAGGGC--ACGTGGGAACTATTATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAATCAAAGGGT i macFas5.chr16 C 0 I 33 s papAnu2.chr16 47648290 363 + 74645514 AAGATTAAATCAAGGTGAATAGAATATCTTTTCCAtgtcatttataaaacatat-tttccatACACATACTTGGTCTAGATCTTTAATTATTAGCATAACAGCAAAGACAGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGgtggatttttaaatttgcaaattaatatatatgatatacctcagaaaattatagaatttaaatcacatttaattaaacattttacaaataatttttatggaTAAGTACAAAATTACATAAAAGAAAGGCTGTTCCTGAAGATCCAGGGC--ACGTGGGAACTATTATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAATCAAAGGGT i papAnu2.chr16 C 0 I 33 s chlSab2.chr16 9916382 363 - 75148670 AAGATTAAATCAAGGTGAATAGAATATCTTTTCCATGTCATTTATAAAACATAT-TTTCCATACACATACTTGGTCTAGATCTTTAATTACTAGCATAACAGCAAAGACAGTTATAGTTACTATATTTCATAAACCCTAAAA-AGGCAAATTATAGGTGGATTTTTAAATTTGCAAATTAATATATATGATATACCTCAGAAAATTATAGAATTTAAATCACATTTAATTAAACATTTTACAAATAATTTTTATGGAGAAGTACAAAATTATATAAAAGAAAGGCTGTTCCTGAAGATCCAGGGC--ACGTGGGAACTATTATTAGGGCAAATGTGAATATGTGTCTTTTATTTACAATCAAAGCCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112784760 361 + 159171411 AAGATGAAATCAAGATGAATAGACTATCTTTTCCATGTCATTTATAGAACTTAT-TTTCCATACACATACTTAGAATAGATCTTTAATGATTAGCATAATAGCAAAGATGGTTATAGTTACTATGTTTCATAAACCCTAAAA-A-GCAAATTACAGGTGGATTTTTAAATGAGCAAATTAGTATACATGATATACCTCACAAAATTATAGAATTTAAATCACA-TTAATTAAACATTTTAGAAATAATTTTTATAGAGAAGCATAAAATTACATAAAAGCCAAGCTGCTCCTGAAGATCCAGGGC--ACATGGGTACCACCGTTAGGGCAAACATGAATATGTGTCTTTTATTTACGACCTGAGCCT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39333535 357 - 61074082 AAGATAAAATTAAGGTGAATAGAATA--TTTTCAATGTCATTTATAAAACATGTATTTTCACATATAT------CATGGATTTTTAGTTGTTAGCATAATAGCAAAGATGATTGTAGTAACTA--TTTCATAAACTCTACACTATCCAAATTACAGGCAGATTTTTAAATTTGCAATTTAGAATATATTATATATCTTACAAAATTAAAGAGTTTAAACTATATTTACTTAAACAGCTCATAAATGATTTTTATTGAAAGGTATAAAATTACAAAAAAACAGGGCTTTTCTTGAAGATCCAGGGCATATGTGGGTACCATCATTAGGGTGGATGTGAATATTTGTTTTTCAATTATAACCCAAGGGT i canFam3.chr9 C 0 C 0 e mm10.chr11 99505770 1033 + 122082543 I a score=37621.000000 s hg38.chr17_JH159146v1_alt 99651 27 + 278131 ATTTCCCTCCTGATCTCACCCTTTGTC------ s panTro4.chr17 66220115 27 - 82630442 ATTTCCCTCCTGATCTCACCCTTTGTC------ i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24752248 27 - 73212453 ATTTCCCTCCTGATCTCACCCTTTGTC------ i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47975375 27 - 81552678 ATTTCCCTCCTGATCTCACCCTTTGTC------ i nomLeu3.chr19 C 0 C 0 s chlSab2.chr16 9916745 27 - 75148670 ATTTCCCACCTGATATCACCCTTTGTC------ i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112785121 27 + 159171411 ATCTCCCTTCTGATCTCACCCTTTGTC------ i calJac3.chr5 C 0 C 0 s canFam3.chr9 39333892 33 - 61074082 ATCTCCCCTGTCATCTCATCTCCTACCTCTGGC i canFam3.chr9 C 0 C 0 e mm10.chr11 99505770 1033 + 122082543 I e papAnu2.chr16 47648653 33 + 74645514 I e macFas5.chr16 52604030 33 + 80997621 I e rheMac3.chr16 53081176 35 + 80904711 I a score=3980.000000 s hg38.chr17_JH159146v1_alt 99678 2 + 278131 CA s panTro4.chr17 66220142 2 - 82630442 CA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24752275 2 - 73212453 CG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47975402 2 - 81552678 CA i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52604063 1 + 80997621 -A i macFas5.chr16 I 33 I 1 s papAnu2.chr16 47648686 1 + 74645514 -A i papAnu2.chr16 I 33 I 1 s chlSab2.chr16 9916772 2 - 75148670 CA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112785148 2 + 159171411 CA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39333925 2 - 61074082 CA i canFam3.chr9 C 0 C 0 e mm10.chr11 99505770 1033 + 122082543 I e rheMac3.chr16 53081176 35 + 80904711 I a score=1133379.000000 s hg38.chr17_JH159146v1_alt 99680 346 + 278131 CAGCTCGT--------------------CTTTC---------------------------ATCCTTAATTATTATTTACTACATAGTCTTTGTGTCATTACTACAAAGAGACGGTGCTGTAACTGGGACGCTGGACACGG--TCCCTGCAATCTTAGTCCCACTGTACATTCTGTTCCATGTAAGTGAGCTCCAAATGACCTCTTGGTTCTTCTTACTCTGCAGCCACAAAAACATATCCATTTTGCTCCTTTCTCTTTCTTATTTTGTCTATTTCTCCCAGTGCCTCTCCTGAATACACT-AATATAGCATCTTCTGTTTTTTT---CTGAACCCAACACGTTTGATTTCATTTCTGATTACCATCCCTCTAATTATAATTTGTAGCCTTTCTTAAAA s panTro4.chr17 66220144 346 - 82630442 CAGCTCGT--------------------CTTTC---------------------------ATCCTTAATTATTATTTACTACATAGTCTTCGtgtcattactacaaagagacggtgctgtaactgggacgctggacatgg--tccctgcaatcttagtcccactgtacattctgttccatgtaagtgagctccaaatgacctcttggttcttcttactctgcagccacaaaaacatatccattttgctcctttctctttcttattttgtctatttctcccagtgcctctcctgaatacacc-aatatagcatcttctgttttttt---ctgaacccaacacgtttgatttcATTTCTGATTACCATCCCCCTAATTATAATTTGTAGCCTTTCTTAAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24752277 346 - 73212453 CAGCTCGT--------------------CTTTC---------------------------ATCCTCAATTATTATTTACTACATAGTCTTTGTGTCATTACTACAAAGAGACAGTGCTGTAACTGGGACGCTGGACGCGG--TCCCTGCAATCTTAGTCCCACTGTACATTCTGTTCCATGTAAGTGAGCTCCAAATGACCTCTTGGTTCTTCTCACTCTGCAGCCACAAAAACATATCCATTTTGCTCTTTTCTCTTTCTTGTTTTGTCTATTTCTCCCAGTGCCTCTCCTGAATACACC-AATATAGCATCTTCTGTTTTTCT---CTGAACCCAACACGTTTGATTTCATTTCTAATTACCATCCCCCTAATTATAATTTGTAGCCTTTCTTAAAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47975404 346 - 81552678 CAGCTCGT--------------------CTttc---------------------------atccctaattattatttactacatagtctttgtgtcattactacaaagagacggtgctgtaactgggacgctggacatgg--tccctgcaatcttagtcccgctgtacattctgttccatgtaagtgagctccaaatgacctcttggttcttcttactctgcagccacaaaaacatatccattttgctccctcctctttcttattttgtctatttcttccagtgcctctcctgaatacacc-aatatagcatcttctgtttttct---ctgaacccaacccttttgatttcATTTCTGATTACCATCCCCCTAATTATAATTTGTAGCCTTTCTTAAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53081211 341 + 80904711 TAGCTCAT--------------------CTTTC---------------------------ATCCCTAATTATTATTTACTACATAGTCTTCGTGTCGTTACTACAAAGAGACGGTGCTGTAACTGGGACGCTGGACACAG--TCCCTGCAATCTTAGTCCCACTGTACATTCTATTCTATCTAAGTGAGTTCCAAATGACTTCTTGGTTCTTCTTATTCTGCAGCCACAAAAGCATACCCATTTTTCTCCTTCCTCTTTCTTATTTTGTCTATTTCTCCCAGTGCCTCTCCTGAATACACC-AATATAGCATCTTCTGTTTCTCT--------CCCAACACATTTGATTTCATTTCTGATTACTATCCCCCCAATTACAATTTGTAGCCTTTATTAAAA i rheMac3.chr16 I 35 C 0 s macFas5.chr16 52604065 341 + 80997621 TAGCTCAT--------------------CTTTC---------------------------ATCCCTAATTATTATTTACTACATAGTCTTCGTGTCGTTACTACAAAGAGACGGTGCTGTAACTGGGACGCTGGACACAG--TCCCTGCAATCTTAGTCCCACTGTACATTCTATTCTATCTAAGTGAGTTCCAAATGACTTCTTGGTTCTTCTTATTCTGCAGCCACAAAAGCATACCCATTTTTCTCCTTCCTCTTTCTTATTTTGTCTATTTCTCCCAGTGCCTCTCCTGAATACACC-AATATAGCATCTTCTGTTTCTCT--------CCCAACACATTTGATTTCATTTCTGATTACTATCCCCCCAATTACAATTTGTAGCCTTTATTAAAA i macFas5.chr16 I 1 C 0 s papAnu2.chr16 47648688 341 + 74645514 TAGCTCAT--------------------CTTTC---------------------------ATCCCTAATTATTATTTACTACATAGTCTTCGTGTCGTTACTACAAAGAGACGGTGCTGTAACTGGGACGCTGGACACAG--TCCCTGCAATCTTAGTCCCACTGTACATTCTATTCTATCTAAGTGAGTTCCAAATGACTTCTTGGTTCTTCTTATTCTGCAGCCACAAAAGCATACCCATTttgctccttcctctttcttattttgtctatttctcccaGTGCCTCTCCTGAATACACC-AATATAGCATCTTCTGTTTCTCT--------CCCAACACATTTGATTTCATTTCTGATTACTATCCCCCTAATTACAATTTGTAGCCTTTATTAAAA i papAnu2.chr16 I 1 C 0 s chlSab2.chr16 9916774 341 - 75148670 CAGCTCAT--------------------CTTTC---------------------------ATCCCTAATTATTATTTACTACATAGTCTTCGTGTCGTTACTACAAAGAGACGGTGCTGTAACTGGGACGCTGCACACAG--TCCCTGCAATCTTAGTCCCACTGTACATTCTATTCTATCTAAGTGAGTTCCAAATGACTTCTTGGTTCTTCTTATTCTGCAGCCACAAAAGCATACTCATTTTGCTCCTTCCTCTTTCTTATTTTGTCTATTTCTCCCAGTGCCTCTCCTGAATATACC-AATATAGCATCTTCTGTTTCTCT--------CCCAACACATTTGATTTCATTTCTGATTACTATCCCCCTAATTACAATTTGTAGCCTTTATTAAAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112785150 347 + 159171411 CAGCTCCC--------------------CTTTC---------------------------ATCACTAATTATTGTTTACTACGTAGTCTTCATGTCATTACTCCAAAGAGATGGTGCTGTGACT-GCACGTGGGACACGATCTCCCTGCAATCTTAGTCCCACTCGACATTCTTTTCCATGTAAGTGAATTCCAAATGACCTCTTGGCTCTTCTTACCCTGCAGCCACAAAAGCACACCTATTGTGATCCTTCCTGTTTCTTATTTTGTCTATTCCTCCCAGTGCCTTTCCTGAATACACA-AAAGTCACATCTTTGGTTTCTCT---CTGAATCCAACACATTCGATTTCATTTCTGATTACTATCCCACGAATTACAATTTGTAGCCTTTCTTGAAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39333927 390 - 61074082 CAGCTCCTGAACACCTCTGTGGACCTTCCTTTCAGAGCTACCTGAACCACAGGTTTGTTTATCACTAATTGCTGTTTACTGCATAGGCTTCATATCATTAATATGAAGAGGTGGTGCTATAACTGGGGTGCTGAACATGA--TTCCTGCAGTC-CACTGCCCCCAAACATTCTGTTCTGTTTGGGTGAGTTGTAAATGAC--CTTGTCTTATCTCCCTCTGTGGCCATAAGAGAATATCTGTTTTCACCCTTCTTCTGTCATATTTTGTCTGCATCTCCCAGTATCTCCCCTGAATTTGCCAAACATAATACCTTCCACTTTTATCATCTAAACCTAGTACATTTCATTCCACTTCTGATTGCTGCCCTCCA----ATAATTTGTAGCCTATAGTAAAA i canFam3.chr9 C 0 C 0 e mm10.chr11 99505770 1033 + 122082543 I a score=49811.000000 s hg38.chr17_JH159146v1_alt 100026 34 + 278131 GGGACCC---TGTGGGGGTGGGGGGGG------GCAGTgggtg s panTro4.chr17 66220490 33 - 82630442 GGGACCC---TGTGGGGGTGGGGGGGG-------CAGcgggtg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24752623 40 - 73212453 GGGACCC---TGTGGGGGTGGGGGGGGGGGTGTGCGGcgggca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47975750 37 - 81552678 GGGACCC---TGTGGGAGTGGGGGGGGGGG---GCGGcgggtg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53081552 29 + 80904711 GGAACCC---TGTGGGGTGGCGGGGGA-----------gggca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52604406 29 + 80997621 GGAACCC---TGTGGGGTGGCGGGGGA-----------gggca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47649029 29 + 74645514 GGAACCC---TGTGGGGTGGCGGGgga-----------gggca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9917115 29 - 75148670 GGAACCC---TGTGGGGTGGCGGGGGA-----------gggca i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39334317 39 - 61074082 GGGATTCTGGTGTGTGTGTGTGTGGGA----TGATAGTGGGCA i canFam3.chr9 C 0 C 0 e mm10.chr11 99505770 1033 + 122082543 I e calJac3.chr5 112785497 0 + 159171411 C a score=645353.000000 s hg38.chr17_JH159146v1_alt 100060 304 + 278131 tggttgctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcatctgaggtcaggagttcgagaccagcctgaccaacgtggagaaactctgtctctact-aaaaaaaaaaaaaaaaaccacaattgtctgggcatggtggcgcatgcctgtaatcctagctacttgggaggccaaggcaggagaatcacttgaacccaggaggtggaggttgcggtgagccgagatcgtgccattgcactccagcctgggcaacacgagcaaaactctgtctcaaaaaaaaaaaaagaaaaaa s panTro4.chr17 66220523 300 - 82630442 tggttgctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcgagaccagcctgaccaacgtggagaaactctgtctctact-aaaaaaaaaaaaata--caacaattgtctgggcatggtggcgcatgcctgtaatcctagctacttgggaggccaaggcaggagaatcacttgaacccaggaggtggaggttgcggtgagccgagatcgtgccattgcactccagcctgggcaacacgagcaaaactctgtctcaaaaaaaaaaa--gaaaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24752663 287 - 73212453 tggttgctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagtttgagacaagcctgaccaacgtggagaaactctgtctctact-aaaaaaaaaata-----caaaaattgtctgggcatggtggcacatgcctgtaatcctagctacttgggaggccgaggcaggataatcacttgaatccagaaggtggaggtggcggtgagccgagatcgtgccattgcactccagcctgggcaacacgagcaaaactctgtctcaaaaaaaa------------ i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47975787 296 - 81552678 tggttgctcacacctgtaatcccagcactttgggaggctgaggcaggtagatcacctgaggtcaggagtttgagaccagcctgaccaacgtggagaaactctgtctctact-aaaaaaaaaaata----caaaaattgtcttggcatggtgatgcatgcctgtaattctagctacttgggaggccgaggcaggagaatcacttgaacccaggaggtggaggttgcggtgagccgagatcgtgccattgcactccagcctgggcaacacgagcaaaactccgtctcaaaaaaaaaaa----aaaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53081581 290 + 80904711 cggtggctcacacctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaaccctgtctctact-aaaaaaaaata------caaaaattgtccgagcttggtggtgtatgcctgtaatcccacttacttgggaagctgaggcaggagaattgcttgaacccgggaggcgaaggttgtggtcagccgaaatcatgccattgcactgtagcctgggcaaaacgaacaaaaatccaaccc--------aaaaaaaaaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52604435 298 + 80997621 cggtggctcacacctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaaccctgtctctact-aaaaaaaaata------caaaaattgcccgagcttggtggtgtatgcctgtaatcccacttacttgggaagctgaggcaggagaattgcttgaacccgggaggtggaggttgtggtcagccgacatcatgccattgcactgtagcctgggcaacacgagcaaaactccatctcaaaaaaaaaaaaaaaaaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47649058 298 + 74645514 cggtggctcacacctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaaccctgtctctact-aaaaaaaaata------caaaaattgtccgagcttggtggtgtatgcctgtaatcccagttacttgggaagctgaggcaggagaattgcttgaacccgggaggtggaggttgtggtgagccgacatcatgccattgcactgtagcctgggcaacacgagcaaaactccatctcaaaaaaaaaaaaaaaaaaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9917144 296 - 75148670 cggtggctcacacctgtaatcccagcactttgggaggccaaggctggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaaccctgtctctactaaaaaaaaaata------caaaagttgtccgagcttggtggtgtatgcctgtaatcccagttactcggcaagctgaggcaggagaattgcttgaacccgggaggtggaggttgtggtgagccgacatcatgccattgcactctagcctgggcaacacaagcaaaactccgtctc---aaaaaaaaaaaaaaaaa i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39334356 0 - 61074082 C e mm10.chr11 99505770 1033 + 122082543 I e calJac3.chr5 112785497 0 + 159171411 C a score=4220.000000 s hg38.chr17_JH159146v1_alt 100364 3 + 278131 aaT s panTro4.chr17 66220823 3 - 82630442 aaT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47976083 3 - 81552678 aaT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53081871 3 + 80904711 aaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52604733 3 + 80997621 aaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47649356 3 + 74645514 aaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9917440 3 - 75148670 aaT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99506803 3 + 122082543 AAA i mm10.chr11 I 1033 C 0 e ponAbe2.chr17 24752950 0 - 73212453 C e canFam3.chr9 39334356 0 - 61074082 C e calJac3.chr5 112785497 0 + 159171411 C a score=71171.000000 s hg38.chr17_JH159146v1_alt 100367 19 + 278131 GGAATCCTGGGGGTGGACT s panTro4.chr17 66220826 19 - 82630442 GGAATCCTGGGGGTGGACT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24752950 19 - 73212453 GGAATCCTGGGGGTGGACT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47976086 19 - 81552678 GGAATCCTGGGGTTGGACT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53081874 19 + 80904711 GGAATCCTAGGGGTGGACT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52604736 19 + 80997621 GGAATCCTAGGGGTGGACT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47649359 19 + 74645514 ggaatcctagGGGTGGACT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9917443 19 - 75148670 GGAATCCTGGGGGTGGACT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112785497 19 + 159171411 GGAATCCTGGGGGTGGACT i calJac3.chr5 C 0 C 0 s mm10.chr11 99506806 19 + 122082543 GAGATCCTGGGAATAGACC i mm10.chr11 C 0 C 0 e canFam3.chr9 39334356 0 - 61074082 C a score=269725.000000 s hg38.chr17_JH159146v1_alt 100386 76 + 278131 TTGGATATTTCATCCTATCAGCCT-----TGTGTCCTGTTACTC-------TTGGGATGGGTCAAAACCAGGAAGTCCCCTGCAGCTT s panTro4.chr17 66220845 76 - 82630442 TTGGATATTTCATCCTATCAGCCT-----TGTGTCCTGTTACTC-------TTGGGATGGGTCAAAACCAGGAAGTCCCCTGCAGCTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24752969 76 - 73212453 TTGGATATTTCATCCTATCAGCCT-----TGTGTCCTGTTACTC-------TAGGGATGAGTCAAAACCAGGAAGTCCCCTACAGCTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47976105 76 - 81552678 TTGGATATTTCATCCTATCAGCCT-----TGTGTCCTGTTACTC-------TTGGGATGGGTCAAAACCAGGAAGTCCCGTGCAGCTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53081893 83 + 80904711 TTGGGTAGTTCATCCTACCAGCCT-----TGTGTCCTGTTACTCCTGGGATCTGGGATGGGTCAAAACCAGGAAATCCTCTGCAGCTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52604755 83 + 80997621 TTGGGTAGTTCATCCTACCAGCCT-----TGTGTCCTGTTACTCCTGGGATCTGGGATGGGTCAAAACCAGGAAATCCTCTGCAGCTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47649378 76 + 74645514 TTGGGTAGTTCATCCTACCAGCCT-----TGTGTCCTGTTACTC-------CTGGGATGGGTCAAAACCAGGAAATCCTCTGCAGCTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9917462 76 - 75148670 TTGGGTAGTTCATCCTACCAGCCT-----TGTGTCCTGTTACTC-------CTGGGATGGGTCAAAACCAGGAAATCCTCTGCAGCTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112785516 71 + 159171411 TTGGATATCTCAT-----CAGTCT-----TGTGTCCTGTTACTC-------TTGGGATGAGTCAAAACCAGGAAGTCCCCTGCAGCTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99506825 75 + 122082543 CTGAAGATCAAACCTGATTA-CCC-----CGTATCCTGTTAATT-------GTAAGATAGGTCAGAACCAACAAGTCCTCTACAGCTC i mm10.chr11 C 0 C 0 s canFam3.chr9 39334356 77 - 61074082 TTTGACTTCCTATCCTATCACCCTCTTCCTATATCCTGTTAATC-------TTAAG----GTCACAACCAGAAAGTCCCCTGCAGCTT i canFam3.chr9 C 0 I 643 a score=2026692.000000 s hg38.chr17_JH159146v1_alt 100462 569 + 278131 TGGCAGCCCACAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCCGGCATTCATTGTTTTGAGCCTATGCTCGCCATGAATATGAACTA-GTTAGAAATGAGACCTACACTTTCCCAA--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGGGCTATACTGTGCCAATCTTCTAGCAATAAACTTCACACAAATCCAACAGCCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GGTCTCCAAAGCAGAACTTCACAAGGTGATACTTTCTTGTGAAGTCACAGTGGTCTATGTCTGTTCTTAGGCTGGTGGGt----------------tattagtgcaccagaaccaaagggattctcaggagctgactcagagtaacctgacttttaagtgccagatgaaagagacagaatgcaaacttattaatttaacattgaaagatgatccattttgcaaccacagagttcccaactgcaaatcaatgcaccttctttgttgtacc-------taagaattagagaaaccaaattgtaatatgaaggctttt-- s panTro4.chr17 66220921 570 - 82630442 TGGCAGCCCACAGTTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATGTCCGGCATTCATTGTTTTGAGCCTATGCTCGCCACGAATATGAACTAAGTTAGAAATGAGACCTACACTTTCCCGA--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGGGCTATAGTGTGCCAATCTTCTAGCAATAAACTTCACACAAATCCAACAGCCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GGTCTCCAAAGCAGAACTTCACAAGGTGATACTTTCTTGTGAAGCCACAGTGGTCTATGTCTGTTCTTAGGCTGGTGGGt----------------tattagtgcaccagaaccaaagggattctcaggagctgactcagagtaacctgacttttaagtgccagatgaaagagacagaatgcaaacttattaatttaacattgaaagatgatccattttgcaaacacagagttcccaactgcaaatcaatgcaccttctttgttgtacc-------taagaattagagaaacccaattgtaatatgaaggctttt-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24753045 570 - 73212453 TGGCAGCCCATAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCCGACATTTATTGTTTTGAGCCTATGCTCGCCATGAATAGGAACTGAGTTAGAAATGAGACCTACACTTTCCTGG--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGCAGAGCAGGGCTATACTGTGCCAATCTTCTAGCAATAAACTTCACACAAATCCAACAACCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GGTCTCCAAAGCCGAACTTCACAAGGTGATACTTTTTTGTGAAGTCACAGTGGTCTATGTCTGTTCTTAGGCTGGTGGGt----------------tattagtgcaccagaaccaaagggattctcaggagctgactcagagtaacctgacttttaagtgccagatgaaagagacagaatgtaaacttattaatttaacattgagagatgatccattttgcaaccacagagttcccaactgcaaattgatgcaccttctttgttgtacc-------taagaattagagaaaccaaattgtaatatgaaggctttt-- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47976181 570 - 81552678 TGGCAGCCCACAATTGCTGATGAAGCCACACAT----TGTTGGAAACATGAATATCTGGCATTCATTGTTTTGAGCCTATGCTCGCCATGAATATGAACTGAGTTAGAAATGAGACCTACACTTTCCTGG--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGGGCTATACTGTGCCAATCTTCTAGCAATAAACTTCACACAAATCCAATAACCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GGTCTCTAAAGCAGAACTTCACAAGGTGATACTTTTTTGTGAAGTCACAGTGGTCTATGTCTGTTCTTAGGCTGGTGGGT----------------TATTAGTGGACCAGAACCAAAGGGATtctcaggagctgactcagagtaacctgacttttaagtgccagatgaaagagacagaatgcaaacttattaatttaacattgagagatgatccattttgcaaccacagagttcccaactgcaaatcaatgcaccttctttgtcgtacc-------taagaattagagaaaccaaattgtaatatgaaggctttc-- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53081976 570 + 80904711 TGGCAGCGCACAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCTGGCATTCATTGTTTTGAGCCTATGCTTGCCATGAATATGAACTGAGTTAGAAATGAGACCTACACTTTCCCGG--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGAGCTCTACTATGCCAATCTTCTAGCAATAAACTTCACACAGACCCAGCAACCTAATTGTTATGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GGTCTCCAAAGCAGAACTTCACAAGCTGATACTTTTTTGTGAAGTCACAGTGGTCTATGTCTATTCTTAGGCTGGTGGGt----------------tattagtgcaccagaactgaagggattctcacaagctgactcacagtaacctgacttttaagtgccagatgaaagagacagaatgcaaacttattaatttaacattgagagatgatccattttgcaaccacagagttcccaactgcgaatcaatgcaccttctttgttgtatc-------taagaattagagaaaccaaactgtaatatgaaggctttt-- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52604838 570 + 80997621 TGGCAGCGCACAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCTGGCATTCATTGTTTTGAGCCTATGCTTGCCATGAATATGAACTGAGTTAGAAATGAGACCTACACTTTCCCGG--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGAGCTCTACTATGCCAATCTTCTAGCAATAAACTTCACACAGACCCAGCAACCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCT-GAtctccaaagcagaacttcacaagctgatacttttttgtgaagtcacagtggtctatgtctgttcttaggctggtgggt----------------tattagtgcaccagaactgaagggattctcacaagctgactcacagtaacctgacttttaagtgccagatgaaagagacagaatgcaaacttattaatttaacattgagagatgatccattttgcaaccacagagttcccaactgcgaatcaatgcaccttctttgttgtatc-------taagaattagagaaaccaaactgtaatatgaaggctttt-- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47649454 514 + 74645514 TGGCAGCGCACAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCTGGCATTCATTGTTTTGAGCCTATGCTTGCCATGAATATGAACTGAGTTAGAAATGAGACCTACACTT----------------------------------------------------------TACTATGCCAATCTTCTAGCAATAAACTTCACACAAACCCAGCAACCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTATTGAGTTAGGTCATCT-GGTCTCCAAAGCAGAACTTCACAAGCTGATACTTTTTTGTGAAGTCACAGTGGTCTATGTCTGTTCTTAGGCTGGTGGGT----------------TATTAGTGCACCAGAACTGAAGGGATTCTCACAAGCTGACTCACAGTAACCTGACTTTTAAGTGCCAGATGAAAGAGACAGAATGCAAACTTATTAATTTAACATTGAGCGATGATCCATTTTGCAACCACAGAGTTCCCAACTGCGAATCAATGCACCTTCTTTGTTGTATC-------TAAGAATTAGAGAAACCAAACTGTAATATGAAGGCTTTT-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9917538 568 - 75148670 TGGCAGCGCACAATTGCTGATGAAGCCACAAAT----TGTTGGAAACATGAATATCTGGCATTCATTGTTTTGAGCCTATGCTTGCCATGAATATGAACTGAGTTAGAAATGAGACATATACTTTCCCGG--TGCTTCTCCATTCAAGACCTCTTGGCTTTATATCTAGTAGAGCAGAGCTCTACTGTGCCAATCTTCTAGCAATAAACTTCACACAAACCCAGCAACCTAATTGTTGTGGTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTaggtcatct-ggtctccaaagcagaatttcacaagctgatacttttttgtgaagtcacagtggtctatgtctgttcttaggctggtgggt----------------tattagtgcaccagaaccaaagggattctcacaagctgactcacagtaacctgacttttaagtgccagatgaaggagacagaatgcaaacttattaatttaacattgagagatGATCCATTTTGCAACCACAGAGTTCCCAACTGTGAATCAATGCACCTTCTTTGTTGTATC-------TAAGAATTAGAGAAACCAAAC--TAATATGAAGGCTTTT-- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112785587 559 + 159171411 TGGCAACCCACCATTGCTGAAGAAGCCACCAAT----TGTTAGAAATACGAATATCTGGCATCCATCGTTTTGAGCCTGTGCTCGCCATGAAC----------------ATGAGACCTACACTTTCCTGG--TGCTTCTCCATTCAAGACCTCTTAGTTTTATATCTAGTAGAGCAGAGCTACACAGTGCCAATCTTCTAGCAATAAACCTCACACAAACCCAATAACCTAATTATTGT-GTTAGAATGAGAAGAGATGAAGATGCTGTTGAGTTAGGTCATCTAGGTCTCCAAAGAGGAACTTCACAAGGTGATACTTT-TTGTGAAGTTATGGTGGTCTACATCGGTTCTGAGGCTGGTGGGT----------------TATTAGTGCACCAGAACCAAAGGGATtctcagga-ttgactcacagtaacctgacttttaagtgccagatgaatcagacagaatgcaaacttattaatttaacattgagaGTTGATCCATTCTGCAGCCACGGAGTTCTCAACTGCAAATCAATGCACCTTCTTTGTTGCACAAATTAGGTTAGAATTAGACAAATCAAATAGTAATAGGAAGGCTTTT-- i calJac3.chr5 C 0 I 2798 s mm10.chr11 99506900 533 + 122082543 TTACAACCCACAATTGCTGATGAAACCACAAGTGGAGTGTTGGAAACATGGATGTCTGGAAGCTACTGTTTTAACACTATACTCATCATGAACGAGA------TTGAAAATGAGGCTTCCCCCATTCCTGCTTGTTCCTCCAGTTAAGACCTCTTAGTTTTGCAGCTGGTAGGGAAGA----------ACCAGTATTTGATCAATAAAC-TCATGTGAACCCAACAACTGGACTTGTGCATTGAGAATGTGGTGGGATGA--ATGCTGTCTAGCACAGTCTTCT-GGTCTCCAGGTCTCCACAGCACAGCCTG-TACTTATTT--------ACAATAACCTGTATCTGTTCTCAGACTGGTGAATTCAGA-GTACTATTTATCTCAGTGCCCAAGAACCAAAGAGATTCTCAAGAGCCAACTCACAGTTGC--ACCTTTTAAATGCCGTGTGAAC----TAGAATTCAAGCTCA-----CCAACACCCAGAGGCAAAGCA-TCTGCAGCC---TAGTTTCCATCGGAAGCTGGGAGCACTTTGTTCATCACAGC-------TCAGAA-TAGATACATTAAT---TAATT------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 39335076 566 - 61074082 tagcagcCCATGACTGATATTGAAGCTACAGATTATCTGTTGGAAACATGGATGATTGGCAGCCATTGTTTTGACCTTGTGCTCATTATGACTATGAACAGGGTTA-AAATGAGATCTATGCTTTCCTAA--TGCGTCTCCAAATAAGGCCTCTTGGTCTAGTA-----TAGAACTGTGCCATTCCATGCCAGCCCTGAAATAGTAAACTTCACATGAACTGAACCACCTAACTCCTGTATTTAGAATGAAATGAGATGGAGGTGCTATCTAGTTGgactgtct-gatctctgagaaagagcttcacatggtgacactcccttatgcagtcactgtggtctgagtgtcttcttaggctggtgagttcaaaggtaccattt-tattagtgcaccagaaacaaagggattctcagaagccgactcacagtaacctaattcttaggtgccggatgaactagccagaatgcaaacttattaatttaacatagagagatGATCCATTCTGCAACCACAATATTCCCACCTG-------------------TGTTGTGTC-------TGAGTATCAGGGAAACCAGACTGTGATATGGAAGTTGGTTG i canFam3.chr9 I 643 C 0 a score=133361.000000 s hg38.chr17_JH159146v1_alt 101031 37 + 278131 gtcaaaaatggaactagaagagggATATGGGGTCTTG s panTro4.chr17 66221491 37 - 82630442 gtcaaaaatggaactagaagagggATATGGGGTCTTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24753615 37 - 73212453 gtcaaaaatggaactagaagagggATGTGGGGTCTTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47976751 37 - 81552678 gtcaaaaatggaactagaagagggATGTGGGGTCTTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53082546 37 + 80904711 gtcaaaaatggaactagaagagggATGTGGGGTCTTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52605408 37 + 80997621 gtcaaaaatggaactagaagagggATGTGGGGTCTTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47649968 37 + 74645514 GTCAAAAATGGAACTAGAAGAGGGATGTGGGGTCTTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9918106 37 - 75148670 GTCAAAAATGGAACTAGAAGAGGGATGTGGGGTCTTG i chlSab2.chr16 C 0 C 0 s mm10.chr11 99507433 37 + 122082543 GGCAAAGATGGAGCCATAAGAGAGACCAgctgccttg i mm10.chr11 C 0 I 716 s canFam3.chr9 39335642 37 - 61074082 GTAAAAAATGGAACCAGAAGAGAGATGTGGGGTCTTA i canFam3.chr9 C 0 C 0 e calJac3.chr5 112786146 2798 + 159171411 I a score=703924.000000 s hg38.chr17_JH159146v1_alt 101068 276 + 278131 AGGAATGAGGT-TGAAAAACTGCCTCAAGTCCACACGTGCTTA---GATGGTGTTCATGAGTTCAGTGTTGCCCCTTCCTGGATTGGGCTGG------ACACTGTTGTGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAATATTTTCTTAACCACTTGAACCACCAGGGATATGGCTCACCTTCTTTAGACCTCCAAGACAAGCATTATTTCTTTAATTCTTTATAGCTTTCATTAGGCTAC--ATGTATGACATTTTCAAACTTGAGTAATTATTTAATTGATT s panTro4.chr17 66221528 276 - 82630442 AGGAATGAGGT-TGAAAAACTGCCTCAAGTCCACACGTGCTTA---GATGGTGTTCATGAGTTCAGTGTTGCCCCTTCCTGGATTGGGCTGG------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAATATTTTCTTAACCACTTGAACCACCAGGGATATGGCTCACCTTCTTCAGACCTCCAAGACAAGCATTATTTCTTTAATTCTTTATAGCTTTCATTAGGCTAC--ATGTATGACATTTTCAAACTTGAGTAATTATTTAATTGATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24753652 272 - 73212453 AGGAATGAGGT-TGAAGAACTGTCTCAATTCCACACGTGCTTA---TATGGTGTTCATGAGTTCAATGTTGCCTCTTCCTGGATTGGGCTGG------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAACATTTTCTTAACCACTTGAACCACCAGGGATATGACTTACCTTCTCTAGACCTCCAAGACAAGCATTATTTCTTTAATTCTTTATAGCTTTCATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATTATTTA----ATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47976788 272 - 81552678 AGGAATGAGGT-TGAAGAACTGCCTCAAGTCCACACATGCTTA---GATGGTGTTCATGAGTTCAGTGTTGCTCCTTCCTGGATTGGGCTGA------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAACATTTTCTTAACCACTTGAACCACCAGGGATATGGCTCACCTTCTTTAGACCTCCAAGACAAGCATTATTTCCTTAATTCTTTATAGCTTTCATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATTATTTG----ACT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53082583 279 + 80904711 AGGAATGAGGT-TGAAGAACTGCCTCAAGTCCACACATGCTCATGTGATGATGTTCATGAGTTCAACGTTGCTCCTTCCTGGATTGGGCTGG------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAACATTTTCTTCACCACTTGAACTACCAGGGATACGGCTCACCTTCTTTAGACCTCCAAGACCAGCATTATTTCTTTAATTCTTTATAGCTTTGATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATCATTTAATTGATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52605445 279 + 80997621 AGGAATGAGGT-TGAAGAACTGCCTCAAGTCCACACATGCTCATGTGATGGTGTTCATGAGTTCAACGTTGCTCCTTCCTGGATTGGGCTGG------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAACATTTTCTTCACCACTTGAACCACCAGGGATACGGCTCACCTTCTTTAGACCTCCAAGACCAGCATTATTTCTTTAATTCTTTATAGCTTTGATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATCATTTAATTGATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47650005 279 + 74645514 AGGAATGAGGT-TGAAGAACTGCCTCAAGTCCACACATGCTCATGTGATGGTGTTCATGAGTTCAACGTTGCTCCTTCCTGGATTGGGCTGG------ACACTGCTGAGTTGTGTTTTTAGGgctcactttctctttttaaaacatttgcttcACCACTTGAACCACCAGGGATACGGCTCACCTTCTTTAGACCTCCAAGACcagcattatttctttaattctttataGCTTTGATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATCATTTAATTGATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9918143 279 - 75148670 ATGAATGAGGT-TGAAGAACTGCCTCAAGTCCACACATGCTCATGTGATGGTGTTCATGAGTTCAACGTTGCTCCTTCCTGGATTGGGCTGG------ACACTGTTGAGTTGTGTTTTTAGGGCTCACTTTCTCTTTTTAAAACATTTTCTTAACCACTTGAACCACCAGGGATATGGCTCACCTTCTTTAGACCTCCAAGACCAACATTATTTCTTTAATTCTTTATAGCTTTGATTAGGCTAC--ATGTATGACATTGTCAAACTTGAGTAATCATTTAATTGATT i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39335679 215 - 61074082 AGGAGTGTGGCAGGAGGAACTGCCCTGACTC--CATGTGCTAA--------TGTGTTTGGATACAATGTCCCATCTTTCCAGATTGGGCTGGATATAAACACTGTTGAGT--TGCTTTTAGAGCTC-------------------------------------------------------ACCTTCTTCAGAACTCCATGACAAACA-CATTTCTTTAACTATTTGTGCCTTTGATTGGGCTACAAATATATAATACTGCCAAATTTGagtgatta--gaacca--- i canFam3.chr9 C 0 C 0 e mm10.chr11 99507470 716 + 122082543 I e calJac3.chr5 112786146 2798 + 159171411 I a score=275255.000000 s hg38.chr17_JH159146v1_alt 101344 97 + 278131 gggcatttgg-aat--agaggatttgagtttgttcagattttgac-tttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagcctta s panTro4.chr17 66221804 97 - 82630442 gggcatttgg-aat--agaggatttgagtttgttcagattttgac-tttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagcctta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24753924 97 - 73212453 gggcatttgg-aat--agaggatttgagtttgttcagattttgac-tttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagcccta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47977060 97 - 81552678 gggcatttgg-aat--agaggatttgagtttgtttagattttgac-tttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagcctta i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53082862 100 + 80904711 gggcattaggaaataaagaggatatg-gttttttcagattttgacttttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagccttg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52605724 100 + 80997621 GGGCATTAGgaaataaagaggatatg-gttttttcagattttgacttttaacatttactagctgt--gacactgagcaaattacttaacttctgtaagccttg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47650284 98 + 74645514 GGGCATTTGG-AATGAAGAGGATATg-gttttttcagattttgac-tTTAACATTTACTAGCTAT--GACactgagcaaattacttaacttctgtaAGCCTTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9918422 98 - 75148670 gggcatttgg-aataaagaggatatg-gttttttcagattttgac-tttaacatttactagctgt--gacactgagcaaactacttaacttctgtaagccttg i chlSab2.chr16 C 0 C 0 s mm10.chr11 99508186 90 + 122082543 GGCCAtttgg-agt--atagaatttg------tttaaattttggc-cttgccatgtactaattgcaaggcattgag---gttagttgacttctcaaagccttg i mm10.chr11 I 716 C 0 s canFam3.chr9 39335894 97 - 61074082 gggcatttgg-aaaatggaagacacgaatttgttcaaatttttac-ttgactgtttactg--tgt--gatgctgagcaaggtagttaacttctgtaagcctta i canFam3.chr9 C 0 C 0 e calJac3.chr5 112786146 2798 + 159171411 I a score=1767242.000000 s hg38.chr17_JH159146v1_alt 101441 515 + 278131 gttcacttgttagtaatgtggtaataaccatagtatggtagggccattgtgagaattgagtgagataattcatgtaaagcatgtagcacaatgtctagAGGCATAATATTTAATCAGTTTTTAATTGAATGAAAGAAGCATTACTCTTTCTACTTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGCGG----------------------------TGGAGAA-----------------GCCTTCCAGCTG----------TTTTCTCCATTGACACCATAACCTGACTCCAGGAAACATCAGGGCCACAAGAGACAAGGGTAACAGATATTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTGCCCTGTCATTTCAGTTGTCCACAAAAGTGATCCTGT---T-ACAGGGATGACTTCAAACTGTTCTCCCTTCTCCTCCAGGGCTATCTTCTTCCTACTGGC-CG-CAAAGATTGTGAAGGTTGAT-ACATGATGGAGAGGTCCTTTACAACTGAGCTCCCTAACATTCTGGAAAACAGA s panTro4.chr17 66221901 515 - 82630442 gttcacttgttagtaatgtggtaataaccatagtatggtagggccattgtgagaattgagtgagataattcatgtaaagcatgtagcacaatgtctagAGGCATAATATTTAATCAGTTTTTAATTGAATGAAAGAAGCATTGCTCTTTCTACTTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGCGG----------------------------TGGAGAA-----------------GCCTTCCAGCTG----------TTTTCTCCATTGACACCATAACCTGACTCCAGGAAACATCAGGGCCACAAGAGACAAGGGTAACAGATATTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTGCCCTGTCATTTCAGTTGTCCACAAAAGTGATCCTGT---T-ACAGGGATGACTTCAAACTGTTCTCCCTTCTCCTCCAGGGCTATCTTCTTCCTACTGGC-CG-CAAAGATTGTGAAGGTTGAT-ACATGATGGAGAGGTCCTTTACAACTGAGCTCCCTAACATTCTAGAAAACAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24754021 515 - 73212453 gttcacttgttagtactgtggtaataaccatagtatggtagggccattgtgagaattgagtgagataattcatgtaaagcatatagtacaatgtctagAGGCATAATATTTAATCACTTTTTAATTGAATGAAAGAAGTGTTGCTCTTTCTACTTATTGGCCCTAGAAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGCGG----------------------------TGGAGAA-----------------GCCTTCCAGCTG----------TTTTCTCCATTGACACCATAACCTGACTCCAGGAAACATCAGGGCCACAAGAGACAAGGGTAACAGATACTGTACT-AGGAGAAAGGCCAT----CAGTCCTCTCTGAATTGTCCTGTCATTTCAGTTGTCCACAAAAGTGATCCTGT---T-ACAGGGATGACTTCAAACTGTTCTCCCTTCTCCTCCGGGACTATCTTCTTCACACTGGC-CG-CAAAGCTTGTAAAGGTTGAT-ACATGATGGAGAGGTCCTTTACAACTGAGCTCCCTAACATTCTGGAAAACAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47977157 515 - 81552678 gctcacttgttagtaatgtggtaataaccatagtatggtagggccattgtgagaattgagtgagataattcatgtaaagcatatagcacaatgtctagAGGCATAATATTTAATCAGTTTTTAATTGAATGAAAGAAGCGTTTCTCTTTCTACTTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGCAG----------------------------TGGAGAA-----------------GCCTTCCAGATG----------TTTTCTCCATTTACACCATAATCTGACTCCAGGAAACATCGGGGCCACAAGAGACAAGGGTAACAGATATTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTGCCCTGTCATTTCAGTTGTCCATAAAAGTGATCCTGT---T-ACAGGGATGACTTCAAACTGTTCTCCCTTCTCCTCCGGGGCTATCTTCTTCCTACTGGC-TG-CAAAGCTTGTGAAGGTTGAT-ACCTGATGGAGAGGTCCTTTACAACTGAGCTCCCTAACATGCTGGAAAACAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53082962 514 + 80904711 gttcccttgtt--taatgtggtaataaccatagtatgatagggccattgtgagaatcgagtgagataattcatgtaaagcgtatagcacagtgtctagAGGCATAATATTTAATCAGTTTTTAATTGAATAAAACAAGCATTGCTCTTTCTACCTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTTTGTGTTGGTGG----------------------------TGGAGAA-----------------GACTTCCAGCTG----------TTTTCTCCGTTGACACCAAAACCTGACTCTAGGAAACATCAGGGCCACAAGGGACAAGGGTAACAGATACTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTGCCCTGTCATTTCAGTTGTCCACAAACGTGATCCTGT---T-ACAGGGATGACTTCAAACTCTTCTCCCTCCTCCTCCTGGGCTATCTTCTTCCTACTGGC-CG-CAAAGCTTGTGAAGGTTGATAACATGATGGAGAGGTCCTTTACGGTTGAGCTTCCTAACATTCTGGAAAACAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52605824 514 + 80997621 gttcccttgtt--taatgtggtaataaccatagtatgatagggccattgtgagaatcgagtgagataattcatgtaaagcgtatagcacagtgtctagAGGCATAATATTTAATCAGTTTTTAATTGAATAAAAGAAGCATTGCTCTTTCTACCTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGTGG----------------------------TGGAGAA-----------------GACTTCCAGCTG----------TTTTCTCCGTTGACACCAAAACCTGACTCTAGGAAACATCAGGGCCACAAGGGACAAGGGTAACAGATACTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTGCCCTGTCATTTCAGTTGTCCACAAACGTGATCCTGT---T-ACAGGGATGACTTCAAACTCTTCTCCCTCCTCCTCCTGGGCTATCTTCTTCCTACTGGC-CG-CAAAGCTTGTGAAGGTTGATAACATGATGGAGAGGTCCTTTACGGTTGAGCTTCCTAACATTCTGGAAAACAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47650382 514 + 74645514 GTTCCCTTGTT--TAATGTGGTAATAACCATAGTATGATAGGGCCATTGTGAGAATCGAGtgagataattcatgtaaagcGTATAGCACAGTGTCTAGAGGCATAATATTTAATCAGTTTTTAATTGAATAAAAGAAGCATTGCTCTTTCTACCTTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTATGTGTTGGTGG----------------------------TGGAGAA-----------------GACTTCCAGCTG----------TTTTCTCCGTTGACACCAAAACCTGACTCTAGGAAACATCAGGGCCACAAGGGACAAGGGTAACAGATATTGTACT-AGGAGAAGGGCCAT----CAGTCCTCTCTGAATTTCCCTGTCATTTCAGTTGTCCACAAACGTGATCCTGT---T-ACAGGGATGACTTCaaactcttctccctcctcctcctgaaCTATCTTCTTCCTACTGGC-CG-CAAAGCTTGTGAAGGTTGATAACGTGATGGAGAGGTCCTTTACGGTTGAGCTTCctaacattctggaaaacaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9918520 514 - 75148670 gttcacttgtt--taatgtggtaataaccatagtatgatagggccattgtgagaatcgagtgagataattcatgtaaagcgtatagcacaatgtctagaggcataatatttagtcagcttttaatTGAATAAAAGAAGCATTGCTCTTTCTACCGTTTGGCCCTAGGAGACACTGTGGCTTCTGTGCATCTGTGATTACTTTTATTACGTGTTGGTGG----------------------------TGGAGAA-----------------GCCTTCCAGCTG----------TTTTCTCCATTGACACCAAAACCTGACTCCAGGAAACATCGGGGCCACAAGGGACAAGGGTAACAGATATTGTACT-AGGGGAAGGGCCGT----CAGTCCTCTCTGAATTTCCCTGTCATTTCAGTTGTCCACAAACGTGATCCTGT---T-ACAGGGATGACTTCAAACTCTTCTCCCTCCTCCTCCTGAACTATCTTCTTCCTACTGGC-CG-CAAAGCTTGTGAAGGTTGATAACGTGATGGAGAGGTCCTTTATGGCTGAGCTTCCTAACATTCTGGAAAACAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112788944 545 + 159171411 gttcacttgttaggaatgtggtgttaacaatagtatgatagggccattgtgagaattgagtgagataattcatgtaaagcatataacaaaatgtctaga--cataataCTTAATCTATTTTTAATTGAATGAAAGAAACCTTGCT-TTTCTACTCTTTGGCCCTAGGAGACGCTGTGGCTTCTGTGCATCTGTAATTACTTCGATCATGTGTTGACAGGACTATGTCCATTTTGAAAG-----TTCTAGAGAA-----------------GCCTTCCAGCTGTTTTCTCCATTTTTCTCCATTGAACCCATAGCCCAACTCCAGGAAACATTGGGCCCACAAAGGACAA-GGTAACAGATATTGTACC-AAGAGAAGGGCCAT----CGGTCCTGTCTGGGTTGCCCTGTCATTTCCATTGTCCACAATAGTAATCCTCT---T-ACAGGGATGACATCAAACTGTTCTCCTTCCTCCTCCGGGGCCATCTTCTTCCTACTGGCTTG-CAAAGAGTGTCAAGGTTGTT-ATGTGATGGAGAGGTCCTTTATAACTAAGTTCCCCAACATTCTGGAAAACAGA i calJac3.chr5 I 2798 C 0 s mm10.chr11 99508276 374 + 122082543 gttcagttggt--agctgtgtaaataatgacagcattacaggggaatcttgagaggtaagtgagatcatccgtgGGACG----------------------------------------------------------------------------------------------------TTC----------------------------------------------------------------CGCAGGA-----------------TCCCTCCTATTG----------ATTTCTCTAT---------AACCTGGTTTCAATGAACACCGAGACCAGGAAGAACAAAGACACCAGATACTGTGCTGGGGAGAAGGGCAGCCTCACAGACCCATCTGAGCTGCCCTGCTCTTTCTCATTTCCACAATACTGATTGTGTAAGT-GCAGGACTGACTTCAAGATTGTCCCTCTCTTTTGACAGGGC-ATCTTCTTCCTGTTGAT-TG-TAGGAAATCTGAAGGTTAGTTATTTG--GAGGAAGACCTTTCCAAAAGAATTCCATGACATTCTgagagagaga i mm10.chr11 C 0 I 53 s canFam3.chr9 39335991 554 - 61074082 gttcacttattggtgaagtggggataataatatcattgtaaggttgttgtgatgattgagcaagctaactcaggtacagcactgagcacagtgtct-gaggcataataGTCAACTGATTTTCAGTTGGCTAGAAGAAGCATTACTCTTTCTACTTGTTGACCATAGGAGGATCTGTGGCTTCTG------TCTCATGGCTTTGATTATGTGTTGATTGTTCTGTGTTAATTGGGACAGGTTTTTTTTTGAGACTTCCTCCTACTACTGCTACTTTCCTGCTA----------CTTTCTCTGTTGAGCCCATAACCTGACTCCAGGGAACATTGGGGCTGGGAGAGATAAGGGCAGCAGAATCTGTTCT-TGGAGAAGGGCCCC----CAGTCCTATCTGGGCTGCTCTGTCATGTTCAATCTCCACAAAAGTGATCCTGT---TCATAGGGCTGACTTCACACTGTTTTCCCTCCTCTTCCTGGGCCGTCTTCTTACTATTGGC-TGACAAAGAGTATG-AGGTTGAT-ATATTATGGGGAGGTCCTTTTCAACTGAGTTCCATCACATTCCAGAAAATAGA i canFam3.chr9 C 0 C 0 a score=68135.000000 s hg38.chr17_JH159146v1_alt 101956 21 + 278131 AGAGTTGGACCTTTATGTGGT----- s panTro4.chr17 66222416 21 - 82630442 AGAGTTGGACCTTTATGTGGT----- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24754536 21 - 73212453 AGAGTTGGACCTGTATGTGGT----- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47977672 21 - 81552678 AGAGTTGGACCTGTATGTGGT----- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53083476 21 + 80904711 AGAGTTGGACCTGTATGTGGA----- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52606338 21 + 80997621 AGAGTTGGACCTGTATGTGGA----- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47650896 21 + 74645514 agaGTTGGACCTGTATGTGGA----- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9919034 21 - 75148670 AGAGTTGGACCTGTATGTGGA----- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112789489 21 + 159171411 AGAGCTGGACCTGTATGTGTT----- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39336545 26 - 61074082 AAAGTTGGGCCTACATGTGATAATCT i canFam3.chr9 C 0 C 0 e mm10.chr11 99508650 53 + 122082543 I a score=207085.000000 s hg38.chr17_JH159146v1_alt 101977 68 + 278131 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GACTCAGCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAATATAGCACT s panTro4.chr17 66222437 68 - 82630442 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GACTCAGCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAATATAGCACT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24754557 67 - 73212453 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GACTC-GCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAATATAGCACT i ponAbe2.chr17 C 0 I 121 s nomLeu3.chr19 47977693 68 - 81552678 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GACTCAGCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAGTATAGCACT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53083497 68 + 80904711 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GATTCAGCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAATCTAGCACT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52606359 68 + 80997621 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GATTCAGCTTTCTTTT---------------------AAAAAGAAAGGTTCTATCCTTAATCTAGCACT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47650917 68 + 74645514 TTTTACTTTGGGT---------------------------CAGG-TGT----------------GATtcagctttctttt---------------------aaaaagaaaggttcTATCCTTAATCTAGCACT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9919055 68 - 75148670 TTTTCCTTTGGGT---------------------------CAGG-TGT----------------GATTCAGCTTTCTATT---------------------AAAAAGAAAGGTTCTATCCTTAATCTAGCACT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112789510 67 + 159171411 TTTTGCTTTGGGT---------------------------CAGG-TGT----------------GACTCAG-TTTCTTTT---------------------AAATAGAAAGGTTCCATCCTTAATCTAGCACT i calJac3.chr5 C 0 C 0 s mm10.chr11 99508703 45 + 122082543 TTTTCCTTTGGGC---------------------------CATTCCAT----------------GGTTCTACTTTCTAGT---------------------GGAAGGAA------------------------ i mm10.chr11 I 53 C 0 s canFam3.chr9 39336571 132 - 61074082 TTTCCCTATGCGcatacacacacacacacacacacacacacaca-cGTCAAAACATCTTAAATAGATACAATTTTTCCttaaaaaataaatagtaaaataaaaaaaGAAAGGTCCCATCCTTAATCTGGTGCT i canFam3.chr9 C 0 C 0 a score=1234856.000000 s hg38.chr17_JH159146v1_alt 102045 331 + 278131 -TTCATTAGTTATCAGAATGGC-TTTGCATGACTATGCCATTGTCATTTGGCTCAAGTGAAATAATTCATTAGCTCTCATGTGATTGTTTTGCCAACTGAA-GTAAGCTTCACGAAGCAGTATAATGCAATCCTACTAACAAGGttactgggtgccaggcatgctctaggagctttgcatgcattaattaatgatgtcatctcagccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agagattaagtaacttgcccaagatctcatggtatgtggcagggctgggaatcagagacccagctggtctagattcaa s panTro4.chr17 66222505 331 - 82630442 -TTCATTAGTTATCAGAATGGC-TTTGCATGACTATGCCATTGTCATTTGGCTCAAGTGAAATAATTCATTAGCTCTCATGTGATTGTTTTGCCAACTGAA-GTAAGCTTCACGAAGCAGTATAATGCAATCCTACTAACAAGGttactgggtgccaggcgtgctctaggagctttgcatgcattaattaatgatgtcatctcagccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agagattaagtaacttgcccaagatctcatggtatgtggcagggctgggaatcagagacccagctggtctagattcaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24754745 331 - 73212453 -ttCATTAGTTATCAGAATGGC-TTTGCATGACTATGCCATTGTCATTTGGCTCAAGTGAAATAATTCATTAGCTCTCATGTGATTGTTTTGCCAACTGAA-GTAAGCTTCATGAAGCAGTATAATGCAATCCTACTAACAAGGttactgggtgccaggcatgctctaggagctttgcatgcattaattaatgatgtcatctcagccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agagattaagtaacttgcccaagatctcatggtatgtggcagggcttggaatcagagacccagctggtctagattcaa i ponAbe2.chr17 I 121 C 0 s nomLeu3.chr19 47977761 332 - 81552678 -TTCATTAGTTATCGGAATGGC-TTTGCATGACTACGCCATTGTCATTTGGCTCAAGTGAAATAATTCATGAGCTCTCATGTGATTGTTTTGCCAACTGAA-GTGAGCTTCTCGAAGCAGTATAATGCAATCCTACTAACAAGGttactgggtgccaggcatactctaggagctttgcatgcattaattaatgatgtcatctcagccctatgaagtagatgctattaatagcccccattttaaagatgaggaaatag------agaggttaagtaacttgtccaagatctcatggtatgtggcagggctgggaatcagagacccagctggtctagattcaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53083565 330 + 80904711 -TTCTTTAGTTATCAGAATGGC-CTTGCATGACTATGCCACTGTCATTTGGCTCAAGTGAAATAATTCATTAGCTCTCGTGTGATTAGTTTGCCAACTGAA-GTAAGC-TCACGAAGCAGTATAAGGCAATCCTACTAACAAGGttactgggtgccaggcatgctccaggagctttgcatgcattaattaatgatgtcatctctgccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agaggttaagtaacttgcccaagatctcatggtacatggcagggctgggaatcaaagacccagctggtctagattcaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52606427 330 + 80997621 -TTCTTTAGTTATCAGAATGGC-CTTGCATGACTATGCCACTGTCATTTGGCTCAAGTGAAATAATTCATTAGCTCTCGTGTGATTAGTTTGCCAACTGAA-GTAAGC-TCACGAAGCAGTATAAGGCAATCCTACTAACAAGGttactgggtgccaggcatgctccaggagctttgcatgcattaattaatgatgtcatctctgccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agaggttaagtaacttgcccaagatctcatggtacatggcagggctgggaatcaaagacccagctggtctagattcaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47650985 319 + 74645514 -TTCTTTAGTTATCAGAATGGC-CTTGCATGACTATGCCA-----------CTCAAGTGAAATAATTCATTAGCTCTCGTGTGATTAGTTTGCCAACTGAA-TTAAGC-TCACGAAGCAGTATAATGCAATCCTACTAACAAGGTTACTGGGTGCCAGGCATGCTCCAGGAGCTTTGCATGCATTAATTAGTGATGTCATCTCTGCCGTATGAAGTAGATGCTATTAAtag-ccccattttaaagatgaggaaatag------agaggttaagtaacttgcccaagatctcaTGGTACATGGCAGGGCTGGGAATCAGAGACCCAGCTGGTCTAGATTCAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9919123 319 - 75148670 -TTCTGTAGTTATCAGAATGGC-CTTGCATGACTATGCCA-----------CTCAAGTGAAATAATTCATTAGCTCTCGTGTGATTAGTTTGCCAACTGAA-TTAAGC-TCACGAAGCAGTATAATGCAATCCTACTAACAAGGttactgggtgccaggcatgctccaggagctctgcatgcattaattagtgatgtcatctctgccctatgaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agaggttaagtaacttgcccaagatctcacggtacatggcagggctgggaatcagagacccagctggtctagattcaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112789577 321 + 159171411 -TTCATCAGGTATCAGAATGGC-TTTGCATGACCATGCCATTGTCAGTTGGCTCAGGGGAAATAATTCATTAGCTCTCGTGGGATTGTTTTGTCAGTTGA-----AGCTTCACGAAGCAGTACAATGCAACCCTACGAACAAGGttcctgggtgccaggcatgctctaggagctttgaatgcattaattaatgttgccctctcagccctgtaaagtagatgctattaatag-ccccattttaaagatgaggaaatag------agaggttaagtaacttgtctgagatctcacggtatgtggcaaggctgggaatcagagacccaggtggtctag------ i calJac3.chr5 C 0 C 0 s mm10.chr11 99508748 311 + 122082543 --------GTAGTTAGGATGAC-TTTGGCTGACTGCTGTGTTGTCAATTAGCTTAAGTGAAATAACTTGTAAGGGTTAGGGTGTTTGTTTTACCAATGGAATGTAAGTTCTTCAAAACATCAAAAGGACACCTTCCTAATAATGTTATGGGgtgtctgacatgctctaagtgctttgtatacattaattaatgttgtcaccccaacactatgaagtgcatgctattaatag-ccccattatacaggaagtagagtgg------agaagttaagtaactcccataggatctcac------------agctgggaatc--agacccagcttgtctaaattcaa i mm10.chr11 C 0 I 136 s canFam3.chr9 39336703 325 - 61074082 TTTATTAAATTATTGGGATGGCTTTTGCTTGACAATGTCATTATCA----GTTCCAATGAAGTACTTCACTAGCTTGAGTGTGACTGTTT-------GGAG-GTAAGTGTTTTAGAGCAGCACAATGAAATCATACTCACAATGttactaggtgccaggcatgc-ctaagagctctgcatacattcattaatgtaatcatgccaaccctatgaagtagatattatcaatag-cctcattctaaagatgaggaagtggagatacagaggtttagtaactttcccaagatctcacagtaggtggcagggctgagaatc--agacccagctggtctggcttcat i canFam3.chr9 C 0 C 0 a score=855390.000000 s hg38.chr17_JH159146v1_alt 102376 238 + 278131 gtatgtgttattaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAAAGTTCTTTTCTAGGTTTTTCTAATACC------------TTTAAAAG-GGTGCTTGTTCTGAGATTTCATCCTAGTCTCCTTTCCCCACTGAACTTAACAGAGTCCTCTTACATGGGTAGTAA-TTTTATTTACCTTCCACTGTGAGACTTCTCCCTGCAAC--CAGAGTCTATGCTGGGAG-TGGGGAAGGGGGTGTTTCTT s panTro4.chr17 66222836 238 - 82630442 gtatgtgttattaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAAAGTTCTTTTCTAGGTTTTTCTAATACC------------TTTAAAAG-GGTGCTTGTTCTGAGATTTCATCCTAGTCTCCTTTCCCCACTGAACTTAACAGAGTCCTCTTACATGGGTAGTAA-TTTTATTTACCTTCCACTGTGAGACTTCTCCCTGCAAC--CAGAGTCTATGCTGGGAG-TGGGGATGGGGGTGTTTCTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24755076 237 - 73212453 gtatgtgttattaatcagtaCCTGATTCTGCTTTTTAAACAAAGGTGGCCAAAGTTCTTTTCTAGGTTTTTCTAATATC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCCTTTCCCTGCTGAACTT-ACAGAGTCCTCTTACATGGGTAGTAA-TTTTATTTACCTTCCATTGTGAGACTTCTCCCTGCAAT--CAGAGTCTATGCTGGGAG-TGGGGATGGGGGTGTTTCTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47978093 237 - 81552678 gtatgtattattaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAAAGTTCTTTTCTAGGTTTTTCTAATACC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCCTTTCCCCGCTGAACTT-ACAGAGTCCTCTTACATGGGTAGTAA-TTTTATTTACCTTCCACTGTGAGACTTCTCCCTGCAAC--TAGAGTCTATGCTGGGAG-TGGGGATGGGGGTGTTTCTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53083895 237 + 80904711 gtatgtgttcttaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAAAGTTCTCTTCTAGTTTTTTCTAATCTC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCTTTTCCCCACTGAACTT-ACAGAGTGCTCTTACATGGGTAGTAA-TTTTATTTACCTTCCATTGTGAGACTTGTCCCTGCAAC--CAGAGTCTCTGCTGGGAA-TGGGGAGGGGGGTGTTTCTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52606757 237 + 80997621 gtatgtgttcttaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAAAGTTCTCTTCTAGTTTTTTCTAATCTC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCTTTTCCCCACTGAACTT-ACAGAGTGCTCTTACACGGGTAGTAA-TTTTATTTACCTTCCATTGTGAGACTTGTCCCTGCAAC--CAGAGTCTCTGCTGGGAA-TGGGGAGGGGGGTGTTTCTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47651304 237 + 74645514 GTATGTATTCTTAATCAGTACATGattctgctttttaaacaaaGGTGGCCAAAGTTCTTTTCTAGGTTTTTCTAATCCC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCCTTTCCCCACTGAACTT-ACAGAGTGCTCTTACACGGGTAGTAA-TTTTATTTACCTTCCACTGTGAGACTTGTCCCTGCAAC--CAGAGTCTCTGCTGGGAA-TGGGGATGGGGGTGTTTCTT i papAnu2.chr16 C 0 I 329 s chlSab2.chr16 9919442 237 - 75148670 gtatgtgttcttaatcagtacatgattctgCTTTTTAAACAAAGGTGGCCAGAGTTCTTTTCTAGGTTTTTCTAATCCC------------TTTAAAGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCCTTTCCCCACTGAACTT-ACAGAGTGCTCTTACACGGGTAGTAA-TTTTATTTACCTTCCACTGTGAGACTTGTCCCTGCAAC--CAGAGTCTCTGCTGGGAA-TGGGGATGGGGGCGTTTCTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112789898 216 + 159171411 -------------------ACATGCTTCTGCTTTTTAAACAGAGATGGCCAACGTTCTTTTCTAGGTTTTTCTA--CTT------------TTTTAGGG-GGTGCTTGTTCTGAGTTTTCATCCTAGTCTCCTTTCCCCATTCAACTT-ACAGAGTCCTCTTACATGGGTAGTAA-TTGTATTTACCTTCCACTGTGAGACTTCTCCCTGCAAC--CAGCGTCTATGCTGGGAA-TGGGGAAGGGGGTGTTTCCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99509195 245 + 122082543 GTATTTGTTCTTAATCAGTGCATGTTTCAGCTTCTTGACCAGACATGGGCA-TGATCTCTTCTAGCTATTGTTAATGTCTCACTTCTAGGGTTTTCTAG-AGCGCTTCTTCTGGATCTTTGTCTGAGTCTCCTTCTCCTATTCAGGTT-TCAGATTCCTCTTGAGTAGGCTGTAG-CTTTATTTGCCTTCCACCTTGTGACTTCTCTCTTCAAT--CAAGGTC-ACACT-GCAG-TGCAGG-GCAGGTGTTTCTC i mm10.chr11 I 136 C 0 s canFam3.chr9 39337028 240 - 61074082 gaatctgttccaaatcagcatgTGGTTGTACTTCTTGACCCCAAGTGGCCAGTGTTCTCTTGTGGCTTTTTCTAATGCC------------TTAGTAGGCACCACTTGTCTTGAATTTTCACGCTAGTCTCCTTTTCTCCCTCAAGTT-ACAGAGTTCTCTTAAATGGGCTATGATTTTTATTTGCCTTTCCTTGTGAGACTTCTCTCTGCACCCACAAAAGCTATACTGAGTGTTGGGGAAGGTGGTCTCTC-- i canFam3.chr9 C 0 C 0 a score=1587568.000000 s hg38.chr17_JH159146v1_alt 102614 538 + 278131 AGAAAGTGGCAGTGAAGGAAGAGAACACAG----------TTATTT-TTTT--------------CCGGTCAATGGAAA-ATGAGCTGACAGACATTTATCCTCCACAGAAGTGCAGAGAGAAGACCTTTTTACTCTTACATACAGTT----GATGGGTAGTTCTTTATGACCAGCTACCCATGTTTAGAGATGTTCAGCCCAAAGCATGGTCTCTCTCTAGGTCTTCTGGGTCAGTAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAATGGGTGGATACAACCCTTTCCAGG-AAACTCTTGAGCACTAGCGTG-CCCAGTGGCCCTCCATAACGAGCTGTAATATCGGAAATTTTTGCTTCTGGATTAGCAGAAAGGCCtttttgattc-ttttttgtttctgttttttttgtttgtttgtttttGGAGAAGGAAAAAGAGAAAGGAGTCCCAAACTTGCTCTCCTCCT--------------GAAAAAAGTAAGAGATCTTACTGTCTGAGATGTTTTCTCCAGGTACGACTAGTATGTCCGCCTTGA-------CTATTGGGTTGTTCCAGAGAGAGAGAAA s panTro4.chr17 66223074 536 - 82630442 AGAAAGTGGCAGTGAAGGAAGAGAACACAG----------TTTTTT-TTTT--------------CCGGTCAATGGAAA-ATGAGCTGACAGACATTTATCCTCCACAGAAGTGCAGAGAGAAGACCTTTTTACTCTTACATACAGTT----GATGGGTAGTTCTTTATGACCAGCTACCCAGGTTTAGAGATGTTCAGCCCAAAGCATGGTCTCTGTCTAGGTCTTCTGGGTCAGTAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAATGGGTGGATACAACCCTTTCCAGG-ATACTCTTGAGCACTAGCATG-CCCAGTGGCCCTCCATAATGAGCTGTAATATCGGAAATTTTTGCTTCTGGATTAGCAGAAAGGCCtttttgattc-ttttttgtttctgtttttttt--ttgtttgtttttgGAGAAGGAAAAAGAGAAGGGAGTCCCAAACTTGCTCTCCTCCT--------------GAAAAAAGTAAGAGATCTTACTGTCTGAGATGTTTTCTCCAGGTACGACTAGTATGTCCGCCTTGA-------CTATTGGGTTGTTCCagagagagagaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24755313 530 - 73212453 AGAAAGTGGCAGTGAAGGAAGAGAACGCAG----------TTTTTT-TTTT--------------CTGGTCAATGGAAA-ATGAGCTGACAGACATTTATCCTCCACAGAAGTGCAGAGAGAAGACCTTTTTACTCTTACATACAGTT----GACGGGTAGTTCTTTATGACCAACTACCCAGGTTTAGAGATGTTCAGCCCAAAGCGTGGTCTCTCTCTAGGTCTTCTGGGTCAGTAGAGTTAGGCAGTTTATTTAAGGGCCACAG-------------ATACCAAATGGGTGGATACAACCCTTTCCAGG-AAACTCTCGAGCACTAGCGGG-CCCAGTGGCCCTCCATAACAAGCTGTAATATCAGAAATTTTTGCTCCTGGATTAGCAGAAAGGCCTTTTTGATTC-TTTTTTGTTTCTGGTTTTTTT--------GTTTTTGGAGAAGGAAAAAGAGAAGGGAGTCCCAAACTTGCTCTCCTCCT--------------GAAAAGAGTAAGAGATCTTACTGTCTGAGATGTTTTCTCCAGGTACGACTAATATGTCTGCCTTGA-------CTATTGGGTTGTTCCagagagagagaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47978330 526 - 81552678 AGAAAGTGGCAGTGAAGGAAGAGCACACAG----------TTATTT-TTTT--------------CCAGTCAACAGAAA-ATGAGCTGACAGACATTTATCCTCCACAGAAGTGC--AGAGAAGGCCTTTTTACTCTTACATACAGTT----GATGGGTAGTTCTTTATGACCAACTACCCAGGTTTAGAGATGTTCAGCCCAAAGTGTGGTCTCTCTCTAGGTCTTCTGGGTCAGTAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAATGGGTGGATACGACCCTTTCCAGG-TAACTCTCGAGCACTGGCTGG-CCCAGTGGCCCTCCATAACGAGCTGTAATATCGGAAATTTTTGCTCCTGGATTAGAAGAAAGGCCTTTTTGATTA--TTTTTGTTTCTGGTTTTTT---------GTTTTTGGAGAAGGAAAAAGAGAAGGGAGTCCCAAACTTGCTCTCCTCCT--------------GAAAAGAGTGAGAGAACTTACTGTCTGAGATGTTTTCTCCAGGTACGACTAGTATGTCCACCTTGA-------CTATTGGGTTGTTCCagagagagagaag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53084132 483 + 80904711 AGAAAGTGGCAGTGAAGGAAGAGAACACAG----------TTATTT-TTTT--------------CCAGTCAATGAACA-ATGAGCTGACAGACATTTATCCTGCACAGAAGTGCAGAG---AGACCTTTTTACCCTTACATACAGTT----GATGGGTAGTTCCTTATGACCAACTACCCAGGTTTAGAGATATTCAGCCCAAAGTGTGGTCTCTCTCCAGGTCTTCTGGGTCAGCAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAACGTGTGGATACAACCCTTTCCGGG--AACTCTCGAGCATTAGCTGG-CTCAGTGACCCTCCATAACAAGCTGTAATATCGGAAACTTTT-----------------------------------TTTTTGTTA---------TT--------GTTTTTGGAGAAGGAAAAAGAGAAGGGAGTCCCAAACCTGCTGTCCTCCT--------------AAAAAGAGTAAGAGAACTTACTGTCTGAGATGTTTTATCCAGGTACAACTAGTATGTCCGCCTTGA-------CTGTTGTATTGTTCCagagagagagaaa i rheMac3.chr16 C 0 I 8 s macFas5.chr16 52606994 486 + 80997621 AGAAAGTGGCAGTGAAGGAAGAGAACACAG----------TTATTT-TTTT--------------CCAGTCAATGAACA-ATGAGCTGACAGACATTTATCCTGCACAGAAGTGCAGAGAGAAGACCTTTTTACCCTTACATACAGTT----GATGGGTAGTTCCTTATGACCAACTACCCAGGTTTAGAGATATTCAGCCCAAAGTGTGGTCTCTCTCCAGGTCTTCTGGGTCAGCAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAACGTGTGGATACAACCCTTTCCGGG--AACTCTCGAGCATTAGCTGG-CTCAGTGACCCTCCATAACAAGCTGTAATATCGGAAACTTTT-----------------------------------TTTTTGTTA---------TT--------GTTTTTGGAGAAGGAAAAAGAGAAGGGAGTCCCAAACCTGCTGTCCTCCT--------------AAAAAGAGTAAGAGAACTTACTGTCTGAGATGTTTTATCCAGGTACAACTAGTATGTCCGCCTTGA-------CTGTTGTATTGTTCCAGAGAGAGAGAAA i macFas5.chr16 C 0 I 8 s papAnu2.chr16 47651870 487 + 74645514 agaaagtggcagtGAAGGAAGAGAACacag----------ttattt-tttt--------------ccagtCAATGAACA-ATGAACTGACAGACATTTATCCTCCACAGAAGTGCAGAGAGAAGACCTTTTTACCCTTACATACAGTT----GATGGGTAGTTCTTTATGACCAACTACCCAGGTTTAGAGATGTTCAGCCCAAAGTGTGGTCTCTCTCTAGGTCTTCTGGGTCAGCAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCAAACGGATGGATACAACCCTTTCCAGG-TAACTCTCGAGCACTAGCTGG-CCCAGTGACCCTCCATAACAAGCTGTAATAtcggaaactttt-----------------------------------tttttgtta---------tt--------gtttttggagaaggaaaaagagaagggagtCCCAAACCTGCTGTCCTCCT--------------AAAAAGAGTAAGAGAACTTACTGTCTGAGATGTTTTATCCAGGTACAACTAGTATGTCCGCCTTGA-------CTGTTTTATtgttccagagagagagaaa i papAnu2.chr16 I 329 I 8 s chlSab2.chr16 9919679 488 - 75148670 AGAAAGTGGCAGTGAAGGAAGAGAACACAG----------TTATTT-TTTT--------------CCAGTCAATGAACA-ATGAGCTGACAGACATTTATCCTGCACAGAAGTGCAGAGAGAAGACCTTTTTACCCTTATGTACAGTT----GATGGGTAGTTCTTTATGACCAACTACCCAGGTTTAGAGATATTCAGCCCAAAGTGTGGTCTCTCTCTAGGTCTTCTGGGTCAGCAGAGTTAGGCAGTTTCTTTAAGGGCCACAG-------------ATACCGAACGTGTGGACACAACCCTTCCTGGG--AACTCTCGAGCACTAGCTGG-CTCGGTGAACCTCCATAACAAGCTGTGATATCGGAAACTTTT-----------------------------------TTTTTGTTA-------TTTT--------GTTTTTGGAGAAGGAAAAAGAGAAGGGAGTCCCAAACCTGCTGTCCTCCT--------------AAAAAGAGTAAGAGAACTTACTGTCTGAGATGTTTTATCCGGGTACGACTAGTATGTCCACCTTGA-------CTGTTGTATTGTTCCagagagagagaaa i chlSab2.chr16 C 0 I 18 s calJac3.chr5 112790114 572 + 159171411 AGAAAGTGGCA--GAAGGAAGAGAACACAGgtttgtttgtttgtttgtttT--------------CTGGTCAATGGAAA-CTGACCTGACAGACATTTATCCTCCACAGAAGTGCAGAGAGAAGAACTTTTTACTCTTATATACAGTC----GATGGGTAGTTCTTTATGACCAATTGCCCACATTTAGAGATGTTCATCCCAAACTGTGGTGTCTCTCTAGGTCTTCCGGGTCAGTCGGATTAGGCAGTTTCTTTAATGGCCACAGATACCAAATACATATACCAAATGGGTGGATACCACCCTTTCCAGG-TAACTCTTGAGGACTAGAGAG-CCCAGTGGCCCTCCATAATGAGCTATAATATCAAAGTTTTTGGCTCCTGGATTAGAAGAAAGGCCTTCTTGATTCTTTTTTTGTTTCTGTCTTGTTTTGTTTGTTTTTTTTGGAGAAG--AAAAAAGAAGGGAGTCCCAAACCTGCTCACCTCCTACAAAAAGAGTAAGAAAAAAAGTAAGAGAACTTACTGGCTGAGATGTTTTCTCCAGGTACTACTAGTATGTCGGCCTTGA-------CTGCTGTGTTGTTCCAGAGAGAGAGAA- i calJac3.chr5 C 0 C 0 s mm10.chr11 99509440 447 + 122082543 AGGCAGTGACAGTGAAGCAGGAGGGCACAG----------TTCTTT-TTTT---TTTTTTTCTGGTTGGTCAGTGGAAACATAAACCCATCAGCAATG----CCCACTCATGTTC--AGACAAGACTCTTGTACTGTTACCTACAGTT----GG-AGATAGTGTTCTATGACCAA--ACACAGCTTCAGAT------------AAATGCTGTCTCTTCCCGACTTTTCTGGGTCAGTAG-GTTAAGTGGCTTCTCCAAGTACCTCTG-------------ATACCAAATG---AAGTAAAGCCATCTCCAGCATGACTCTGAAGCACCTGCTGGTCCCACTGGGTCACCATAAGGAGCTATGATAGCAGA--CTTTTGCTTTTGCCTTAGGAGGAAGGTGGACTTGATTA--TTTTT-----------------------TCCTTATGACAAGGACACAGGGAAAGGAG-------------------CT--------------------------------------------TAGTTTCTTCAGGAAATACCAGTATGTCT-TCTCGG-------CTGTTGCATCATGCAAGACAGAGA---- i mm10.chr11 C 0 I 1 s canFam3.chr9 39337268 500 - 61074082 AGAGAGTGGCAGTGATGGAGGAGGGCACAC----------TTATGT-TTTTTTTTTTTTTTCTGATGGGTCAGTGGCAA-ATGAGCTGAAAAACATTTAT----------GGGGCAAAGAGAAGACCTTTCTATCCTGACAAACAAGTTGGGGATAGGCAGTTCTCTATAATCAACTATATGGATTTGGAGAAATTCAGTCCCAAATGTGGTCTC--CCTAGCTCTTCTGGTTTAGTAGAGTT-----------------------G-------------GTATTAAGTAGGTAAGTACTGTCCTCTGCAGGGTAACTCTCAAGCACTTGCTGGGCCCAATGGGCTACCACAATGAGCTATAA-AGCAGAGGGTTCA-CCCCTGGCTTAGAAGAAGGA--------------TTTTTGATT--------TTT--------TTCTTTATAGAAAGACACAAAGAAGAGAGCCACAAACCTGCTTTATTTCT-------------AGGAAATAGTAAGATAAACTTTAATCTCAGATATTTACTTCAGGTACCACCAATATGTTCACCTTGATATCCACCACTTATGTTGTCCCAGACAgagaggaa i canFam3.chr9 C 0 C 0 a score=16592.000000 s hg38.chr17_JH159146v1_alt 103152 30 + 278131 GAGGGGG-GGG----GGGTgagagagagaaagaga s panTro4.chr17 66223610 28 - 82630442 gaagggg-ggg----tggggggagagaga--gaga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24755843 28 - 73212453 gaaagag-gag----gggagagagagaga--gaga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47978856 29 - 81552678 gaaagagcggg----gtggggcgggggga--gaga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53084623 28 + 80904711 gttgggg-gag----gagagagagagaga--gaga i rheMac3.chr16 I 8 C 0 s macFas5.chr16 52607488 32 + 80997621 GTTGGGG-GAGgagagagagagagagaga--gaga i macFas5.chr16 I 8 C 0 s papAnu2.chr16 47652365 12 + 74645514 ggtgggg-gag----------------------ga i papAnu2.chr16 I 8 C 0 s calJac3.chr5 112790686 25 + 159171411 ---GGGA-GTG----CTGAGGGGTGGGGA--GAGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99509888 28 + 122082543 GGGGGAG-AAG----GTTAGGGAGTGGAT--AGGA i mm10.chr11 I 1 I 2 s canFam3.chr9 39337768 19 - 61074082 ----------g----gagagaagaaggga--gagg i canFam3.chr9 C 0 C 0 e chlSab2.chr16 9920167 18 - 75148670 I a score=2030303.000000 s hg38.chr17_JH159146v1_alt 103182 547 + 278131 gagagag--------agagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GTGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-CAT-T-TTTTCCCATGTGCATGTAAGTGGTAGCCTGTGGCTCAAAAGCATCACCT-AGGAAAGCTCTCCAAATATGATGTT-TAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGTTGCCAAACAG----GGTTGTTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAACTTGTGAATCATTCATGAACACACTGATCAGATATTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-TCTGTGTCA--CGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAATAATGACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATGTTT-C-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT s panTro4.chr17 66223638 547 - 82630442 aagagag--------agagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GCGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-CAT-T-TTTTCCCATGTGCATGTAAGTGGTAGCCTGTGGCTTAAAAGCATCACCT-AGGAAAGCTCTCCAAATATGATGTT-TAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGTTGCCAAACAG----GGTTGTTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAACTTGTGAATCATTCATGAACACACTGATCAGATATTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-TCTGTGTCA--CGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAATAATGACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATTTTT-C-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24755871 555 - 73212453 aagagagagagacaaagagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GCGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----CA-CATAT-TTTTCCCATGTCCATGTAAGTAGTAGCCTGTGGTTTAAAAGCATTACCT-AGGAAAGCTCTCCAAATACGATGTT-TAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGTTGCCAAACAG----GGTTGTTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTGTGAATCATCCATGAACACACTGATCAGATATTTCTAGCCAGCCGAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAGGGTTTGCTTACCCTGAGACTAACCCAAG-GCTGTGTCA--CGGATGCTGATTGCCTCAGCCTGGAAATTCTTCCTAACCTAATGTGGACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATGTTT-------------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47978885 549 - 81552678 gagagag--------acaaagaaa----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GCGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-CATAT-TTTTCCCATGTGCATGTAAGTGGTAGCCTGTGGCTTAAAAGCATCACCT-AGGAAAGCTCTCCAAATATGATGTT-TAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGTTGCCAGACAG----GGTTGTTCCTATTTGAACTGGGTGCGTGGGTGGTTCCCATGAAGCTTGTGAATCATTCATGAACACACTGATCAGATATTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TGTTTAAGGTTTGCTTGCCCTGAGACTAACCCAAG-GCTGTGTCA--TGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAATATGGACCTATTCTCTTCTCTTTG---GGGACCCTTTCCTTTTCTCTTGAATTTTAATGTTTTC-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53084651 548 + 80904711 gagagag--------agagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GGGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-CATAT-TTTCCCCATGTGCATGTAAGTGGTAGCCTATGGCTTAAAAGCGTCACCT-AGGAAAGCTCTCCAAATATGATGCT-CAACCTGAAAGGAT------AATTACAGCAAACCTTTCTT-TGCTGCCAGACAG----GGTTGCTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTATGAATCATGCATGAACACACTGACCAGATACTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-GCTGTGTCA--CGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAACATGAACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATCTTT-C-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52607520 548 + 80997621 gagagag--------agagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GGGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-CATAT-TTTCCCCATGTGCATGTAAGTGGTAGCCTATGGCTTAAAAGCGTCACCT-AGGAAAGCTCTCCAAATATGATGCT-CAACCTGAAAGGAT------AATTACAGCAAACCTTTCTT-TGCTGCCAGACAG----GGTTGCTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTATGAATCATGCATGAACACACTGACCAGATACTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-GCTGTGTCA--CGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAACATGAACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATCTTT-C-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGGATGTTTGCTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47652377 548 + 74645514 gagacag--------agagagaga----gagagaggatca---aGAAAACATATTCAGAAATTTTGCTATT-GGGATGCCTTC-TTAAGACGTTTAGAAACATTGATA----TA-CATAT-TTTCCCCATGTGCATGTAAGTGGTAGCCTATGGCTTAAAAGCGTCACCT-AGGAAAGCTCTCCAAATATGATGCT-CAACCTGAAAGGAT------AATTACAGCAAACCTTCCAA-TGCTGCCAGACAG----GGTTGCTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTATGACTCATGCATGAACACACTGACCAGATACTTCTAGCCAGCCCAGTACCCAGAGGATTCATTTCCTATGAAAGACATTTGATCACAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-GCTGTGTCA--CGGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAACATGGACCTATTCTCTTCTCTTTG---GGGacactttccttttctcttgaatTTTAATCTTT-C-----------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTGgatgtttgcttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9920185 547 - 75148670 gagagag--------agagagaga----gagagagGATCA---AGAAAACATATTCAGAAATTTTGCTATT-GGGATGCCTTC-TTAAGATGTTTAGAAACATTGATA----TA-TATAT-TTTCCCCATGTGCATGTAAGTGGTAGCCTGTGGCTTAAAAGCGTCACCT-AGGAAAGCTCTCCAAATATGATGCT-CAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGCCGCCAAACAG----GGTTGTTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTGTGAATCATGCATGAACACACTGACCAGATATTTCTAGCCAGCCCAATACCCAGAGGATTCATTTCCTATAAAAGACATTTGATCGCAGTGTTGAAACAATG----TATTCAAGGTTTGCTTGCCCTGAGACTAACCCAAG-GCTGTGTCA--CAGATGCTGATTGCCTCAGCCTAGAAATTCTTCCTAACCTAACATGGACCTATTCTCTTCTCTTTG---GGGACACTTTCCTTTTCTCTTGAATTTTAATCTTT-------------------------------------------------------------------------------------CCCCCTTC--TCTCATTTAAAGTAGATGTTTGCTTT i chlSab2.chr16 I 18 C 0 s calJac3.chr5 112790711 587 + 159171411 ----------------------GA----GAG-GAGAATCG---AGAAAATGTATTCAGAAATTTTGCTGCT-GTGATGCCTTT-TTAAGATGTTTAGA------------------------------------ATGTAGGTGGTGGCCTGTGGCTTAAAAGCATCACCT-AGGAAAACCCTCCAGATCCTATGCTCCAACCTGAAAGGAT------AATTACAGCAAACCTTTCAA-TGTTGCCACACAG----GGTTGTTCCCATTTGAACTGGGTGCGTGGGTTGTTCCCATGAAGCTTGTGAATCATGCTTGAACACACTGACCAGATATTTCTAGCCAGCCCCATATCCAGAGGATTCATTTCCTATAAAAGACATTTGATCACAGTGTTGAAACAATG----CATTCCAGGTTAGCTTGCCCCGAGACTAACCCATG-GCTGTGTCA--TAGGTGCTGATTGCCTCAGCCTAGAAATTAGTCCTAATCTAACACGAACCTATTCTCTTCTCTTTG---GAGACACTTTCTTTTTCTCTTGAATTTTAATCTCT-CCCCCTTCTCGCATTTAAAGTGTATGTTTGCTTTTAAAATGTGTTTTTATTATTAATTTCTTTTTCTCTTGATTTTTAATCTCTCCCCCTTC--TCGCATTTAAAGTGTATGTTTGCTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99509918 569 + 122082543 GAGAGAGAAAAGGCAAGGAACAGATTCTGAGAAAGGACGACACAGAGAACTTTTTCAGGAACTTTGCTTCT-GTGATACCTTTATTGAGGTGTCTTAGAAAACTGGCATTTTTC-TATGT-TGTTTTTCTGTGCCTGGAAATGGTGACCTATAGCTTGAAGGCATGGCCTAAGAAAAACTCTCCGAGCATGATGCT-CAACCTGAAAGGATCATTCCAACTAAAACAAACCTTCCTGCTGTTGCCAAACAC----GGTTGCTCCCCTCTG-CCTGCATGCGTGGGTAGTTCCCATGAAGC-TGTGAATCCTGCATGAACACATTGACCAGGTATTTCCAGCCAGTCAAATAGGGGAAGGATTCATTTCCTATAAAAGACATTTGATTACAGTGTTGAAGCAATGAACACATACCAGGCTTGTCTGTGCTGATGCTAACCCAGG-GCTCTGTAGTTTGGATGGTCATTCTTTTTGCCCATGACTTCTTCCTAA------AATGAGCATTTTTCTTTTGTGTGTGTGACACACTTCACTTTGTTTCTGAACCTTATTCCCC-A-----------------------------------------------------------------------------------TTTAATTC--CCTCTTATCA--------TTTGCCTT i mm10.chr11 I 2 C 0 s canFam3.chr9 39337787 558 - 61074082 -agaggg-------gagggaggTG----GTGGGAACAGCA---AGAAAGTGTGCTTAGAAACTTTGCTACTGGTGACACCTGAACTGGAATATTTAGAAACATTGGCA----TATTATATATTTTCTTATGTTCATATAAGTGGTGGCCTGTGGCTTAAAAGCATCATAT-AAGAAAACCCTCCAAATATAATGCT-CAACCTGAAATGATCATTT-GACTACATAAACCTTTCCAA-TGTTGCCAAATAGGATTGGTTGTTCGCATTTGAACTAGGTGCGTGGGTTGTTCCCATGAAGCTTGTGAATCATTCAGAAACACGC----CAGATATTTCCAGCTAGCCAACCAGCCAAAAGATTCATTTTCTAT-AAAGACATTTGATTACAGTGTTGAAACAGTG----CATTCCAGGCTTGCTTGCACTGATACTAGGCATGGCGTTGTGTCA--TGGACGCTGGTTGCCTCAGCCTACAAATTCTTTCTAACATGG-ATGGTGCTCTTTCTTTCTCATCT---GGGACACTTTCTGTTTCTCTTGAATTTTAATCTCT-T-----------------------------------------------------------------------------------TCTCCTTCTTTCTCATTGGGAGAGGAAATTTGCTTT i canFam3.chr9 C 0 I 1643 a score=1052787.000000 s hg38.chr17_JH159146v1_alt 103729 304 + 278131 TAAAATGTGTTTTCATTATA-AAAACTTTAATTTTAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGTAAGGGATCCGTTTCTGTCTAGAGTAAGATACTTTTCTTCATTGTTTG-AAAAATGGAAATTATGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAG-ACATGAAGATCTCACTGATACCATCCAATTGCCTTT----AAAAGACACTGGCAAAGTGGGGTGGGGG---GGGTTGGAAGAC---TTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA----- s panTro4.chr17 66224185 307 - 82630442 TAAAATGTGTTTTCATTATA-AAAACTTTAATTTTAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGTAAGGGATCCGTTTCTGTCTAGAGTAAGATACTTTTCTTCATTGTTTG-AAAAATGGAAATTATGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAG-ACATGAAGATCTCACTGATACCATCCAATTGCCTTT----AAAAGACACTGGCAAAGTGGGGTGGGGGCAGGGGTTGGAAGAC---TTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA----- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24756426 308 - 73212453 TAAAGTGTGTTTTCATTATA-AAAACTTTAATTTTAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGTAAGGGGTCCGTTTCTGTTTAGAGTAAGATACTTTTCTTCATTGTTTG-AAAAATGGAAATTATGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAG-ACATGAAGATCTCACTGATACCATCCAATTGCCTTT----AAAAGACCCTGGCAAAGTGGGGTGGGGGC--GGGTTGGAAGACATTTTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA----- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47979434 305 - 81552678 TAAAATGTGTTTTCATTATA-AAAACTTTAATTTTAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGTAAGGG-TCTGTTTCTGTCTAGAGTAAGATACTTTTCTTCACTGTTTG-AAAAATGGAAATTACGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAGAACATGAAAGTATCACTGATACCATCCACTTGCCTTT----AAAAGACACTGGCAAGGTGGGGTGGGGGC--AGGTTGGAAGAG---TTTTTTTGGTATCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA----- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53085199 309 + 80904711 TAAAATGGGTTTTCATTATA-GGAACTTTAATTTCAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGCGAGGGGTCCGTTTCTGTCTGGAGTAAGATACTTTTCTTCATTGTTTGAAAAAATGGAAATGATGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAGAACATGAAGATCTCACTGATACCATCTAATTGCCTTT----AAAAGACACTGGCAAGGTGGGGTGGGGGC--AGGTTGGAAGAC-TTTTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAACTAGACATGGTAAGTAA----- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52608068 309 + 80997621 TAAAATGGGTTTTCATTATA-GGAACTTTAATTTCAAATCAAAATGGACAGAAATAGGAT--AAACTTACTCAGGCGAGGGGTCCGTTTCTGTCTGGAGTAAGATACTTTTCTTCATTGTTTGAAAAAATGGAAATGATGGGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAGAACATGAAGATCTCACTGATACCATCTAATTGCCTTT----AAAAGACACTGGCAAGGTGGGGTGGGGGC--AGGTTGGAAGAC-TTTTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAACTAGACATGGTAAGTAA----- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47652925 307 + 74645514 taaaatgggTTTTCATTATA-GgaactttaattttaaatcaaaatggacAGAAATAGGAT--AAACTTACTCAGGCAAGGGGTCCGTTTCTGTCTAGAGTAAGATACTTTTCTTCATTGtttgaaaaaatggaaatgatggGAATTAATAACAACATAGAGTCAT---TATCTTCTAAAGAACATGAAGATCTCACTGATACCGTCTAATTGCCTTT----AAAAGACACTggc-aggtggggtgggggc--aggttgGAAGAC--ttttttttGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA----- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9920732 308 - 75148670 TAAAATGGGTTTTCATTATA-GGAACTTTAATTTTAAATCAAAATGGACAGAAATAGGAT--AAACCTACTCAGGTGAAGGGTCCGTTTCTGTCTAGAGTAAGATACTTTTCTTCATTTTTTGAAAAAATGGAAATGATGGGAATTAATAACAACATAGGGTCAT---TATCTTCGAAAGAACATGAAGATCTCACTGATACCATCTAATTGCCTTT----AAAAGACACTGGCAAGGTGGGGTGGGGGC--AGGTTGGAAGAC--TTTTTTTTGGTGTCAGTTCTTATTTACAGAGG----------------TAGAAAGCTAGACATGATAAGTAA----- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112791298 323 + 159171411 TAAAATGTGTTTTTGTTATT-AAAACTTTAATTTTAAATCAAAATGGACAGAAATAGAATAGAAACTTACTCAGCTAAGGGGGTCATTTCTGTCTAGAGTAAGATAATTTTCTTCATTGTTTG-AAAAGTGGAAATTATGGGAATTAATAGCAACATAGAGTAAT---TATCTTCTAAAGAACATTAAGATCTCACTGATACCATCTAATTGCCTTT----AAAAGACACTGGCAAGGTGAGATGGAGG---GGGTTGAAAGAC---TTTTTTTGGTGTCAATTCCTATTTACAGAGGAATAGAGAGCTTTCTAGAGAAAGCTAGACATGATAAGTAA----- i calJac3.chr5 C 0 I 300 s mm10.chr11 99510487 295 + 122082543 TAAAATGCTTTTTCATTAGAGAAAACTTTCCTTTTAAAT-AAAATGGGCAG-ATTAGGAT--AAACTTAGCCAAGAAATAGGCTCATTTCATCCTAGAGTAAGATACATTTC-TCATTGCTAG-CTACACGGAAATCA-GGGAGTT-ATAGTAAGACACTATCATATCTAGTTGCTAAAAATCATATAGAGATCACCGACAGCATTTA-TGGCCTTT----AAAAGATACCTGGAAGAGGAGTTTG------AGGTTG--------TTATTTCTGGCATCACCTCCTGTTTATAGATA----------------TAGATGACTAGACACAACAGGGTG----- i mm10.chr11 C 0 C 0 s canFam3.chr9 39339988 285 - 61074082 taaaATGC-TCTTTATCATC-AGAACTTGCATTTTAAATCAAAATGGACAGAATTAGGGT--AGACCTACTCATGCAAT-----------------GAGCAATACACTTTTATCCATTGTTTG-ATACATGAAAATCA------ATAAGAAGAACATACAATAAT---TAGCTTCTAAAAAACTTAAAGATCTTATCAATAGCATCTGATTGCCTTTTTAAAAAAGACTTCAGAGAGAGAAG----------GAATTGGAGGAT-GTTATCTTTGATGCTATTTTCTATTTACAGTTG----------------CAGAAGGCAAGACACAATAAGGTGAGGAA i canFam3.chr9 I 1643 C 0 a score=290850.000000 s hg38.chr17_JH159146v1_alt 104033 92 + 278131 TGTCAGA----------GCTT----------GTAAGAGAAA-CTAAGGACGTAAGCTTTGAAGAGTCCATGGTG-----ACTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT--------- s panTro4.chr17 66224492 92 - 82630442 TGTCAGA----------GCTT----------GTAAGAGAAA-CTAAGGATGTAAGCTTTGAAGAGTCCATGGTA-----ACTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT--------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24756734 92 - 73212453 TGTCAGA----------GCTT----------Gtgagagaaa-ctaaggacataagctttgaagagtccatggtg-----actgc-ccagagtctaagcacagagaagccaa-------------------------------------------------atggtact--------- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47979739 92 - 81552678 TGTCAGA----------GCTT----------GTAAGAGAAA-CTAAGGATATAAGCTTTGAAGGGTCCATGGTG-----AGTGC-CCAGAGTCTAAGCACAGATAAGCCAA-------------------------------------------------ATGGTATG--------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53085508 92 + 80904711 TGTCAGA----------GCTT----------GTAAGAGAAA-CTAAGGACATAAGCTTTGAAGAGTCCATGGTG-----AGTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT--------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52608377 92 + 80997621 TGTCAGA----------GCTT----------GTAAGAGAAA-CTAAGGACATAAGCTTTGAAGAGTCCATGGTG-----AGTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT--------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47653232 92 + 74645514 TGTCGGA----------GCTT----------GTAAGAGAAA-CTAAGGACATAAGCTTTGAAGAGTCCATGGTG-----AGTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT--------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9921040 92 - 75148670 TGTCGGA----------GCTT----------GTAAGAGAAA-CTAAGGACATAAGCTTTGAAGAGTCCATGGTG-----AGTGC-CCAGAGTCTAAGCACAGAGAAGCCAA-------------------------------------------------ATGGTACT--------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112791921 91 + 159171411 TGTCAGA----------GCTT----------TTAAGAGACA-CTAAGGACATGAGCTCTGAAGAGTCCATGGTG-----AGTGC-CTAGAGTCTAAGCACAGAGAA-TCAA-------------------------------------------------GAGGTACT--------- i calJac3.chr5 I 300 C 0 s mm10.chr11 99510782 101 + 122082543 AGTCAAATCCCATATGTGTTT----------ATAAGAGAAG-CCAAGGACATTTGATTTGAAGAGTCTATGATG-----AACACTCTAGAACATA--CAGAGAGAAGGCAA-------------------------------------------------GTGATGCC--------- i mm10.chr11 C 0 C 0 s canFam3.chr9 39340273 166 - 61074082 CATCAGG----------GATTTAGATAATAGATCAGAAAAATCTCCAGGTCTAAGCGCAGAGAAGTCAATGATGCTTCTAAGAA-CTagaatgctaactctgggaaacgaactaggggtggtagaaggggaggagggcggggtgtgggagtgaatgggtgacggcactgggggttat i canFam3.chr9 C 0 C 0 a score=13752.000000 s hg38.chr17_JH159146v1_alt 104125 4 + 278131 TCTG s panTro4.chr17 66224584 4 - 82630442 TCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24756826 4 - 73212453 tctg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47979831 4 - 81552678 TCTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53085600 4 + 80904711 TCTG i rheMac3.chr16 C 0 I 3 s chlSab2.chr16 9921132 4 - 75148670 TCTG i chlSab2.chr16 C 0 I 3 s calJac3.chr5 112792012 4 + 159171411 TCTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99510883 4 + 122082543 TCTG i mm10.chr11 C 0 C 0 s canFam3.chr9 39340439 4 - 61074082 tctg i canFam3.chr9 C 0 I 55 e papAnu2.chr16 47653324 0 + 74645514 C e macFas5.chr16 52608469 0 + 80997621 C a score=227242.000000 s hg38.chr17_JH159146v1_alt 104129 272 + 278131 AGAGTTAGAGCCTGAGGTCACTGTCTTG----GGGTCCAGTGTTC-TTCACATTAGGCC-------TCAGTCCACAC--CTGTTCACTACAGATGTGCCTGGGAACGAGGAGAGTGAGGAGCAGAAGACGGGGAACAAGGAGAGTGAGGAGCAGAAG-AAAGAGCACT----GG-TCCTCTTTTCGACCCACGTACCATGGACCAGTTACTGTTCTTTCTGTGCCCCAGATTCTCCATCTCTCACAT-TAAAAATGCTATTAGCTGCCATC-CAATACCTTCCGCATTCAAAAA s panTro4.chr17 66224588 276 - 82630442 AGAGTTAGAGCCTGAGCTCACTGTCTTG----GGGTCCAGTGTTC-TTCACATTAGGCC-------TCAGTCCACAC--CTGTTCACTACAGATGTGCCTGGGAACGAGGAGAGCGAGGAGCAGAAGACGGGGAACAAGGAGAGTGAGGAGCAGAAG-AAAGAGCACTCACTGG-TCCTCTTTTCGACCCACGTACCATGGACCAGTTACTGTTCTTTCTGTGCCCCAGATTCTCCATCTCTCGCAT-TAAAAATGCTATTAGCTGCCATC-CAATACCTTCCGCATTCAAAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24756830 272 - 73212453 agagttagagcctgaagtcactgtcttg----gggtccagtgttc-ttcacattaggcc-------TCAGTCCACAC--CTGTTCACTACAGATGTGCCTGGGAATGAGGAGAGCGAGGAGCAGAAGACGGGGAACAAGGAGAGTGAGGAGCAGAAG-AAAGAGCACT----GG-TCCTCTTGTTGACCCATGTACTATGGACCAGTTACTGTTCTTTCTGTGCCCCAGATTCTCCATCTCTGGCAT-GAAAAATGCTATTAGCTGCCATC-CAATACCTTCCGCATTCAAAAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47979835 267 - 81552678 AGAGTTAGAGCCTGAGGTCACTGTCTTG----GGGTCCAGTGTTC-TTTGCATTAGGCC-------TCAGTCCACAC--CTGTCCACTACAGATGTGCCTGGGAATGAAGAGAGTGAGGAGCAGAAGACAGGGAACAAGGAGAGTGAGGAGCAGAAGAAAAGAGCACT----GG-TCCTCTTGTTGACCACTG------AGAACACGTACCATTCTCTCTGTGCCCCAGATTCTCCATCTATGACAT-TAAAAAGGCTATTAGCTGCCATC-CAATACCTTCCCCATTCAAAAA i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112792016 240 + 159171411 AGGGTCAGAACTTGGGGTCGCTGTCTTG----GGGTCAAGTGTTG-TTTGCATTAGGCC-------TCAGTCCACAG--CTGTTCACCACAGAAGTGC------------------------------CAGATAACGAGGGGAGTGAGGAGCAGAAG-AAAGGGTACT----GG-TCTTCTTGTTGACC-ACATGCCATGAAGAAGTTACCATTCTCTCTGTG-CCCAGATTCTTCATCTCTGACAT-TAAAAAGACTACTAGCTGCCATC-CAATACCTTCCTCATTCAAAAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99510887 223 + 122082543 --GGACTGAATCAGAGACCAGTGACTTGTAGTTGGCTCAGGGTTG-ACTCCATTAGACCCTCCTGTTTGGTTTTTACTGTTGTCTAGTGTGGATGTGT-----------------------------------------TAGGATGTGAAGTAGAAG-AAAGA-CTTG----GA-TTTTCTCATTGTCC---------------AGTTGCCTTTTTCTCTGGGTCCTCAATTC----TCTGTGACAC-GAAGAAGCCAACTAGCTGCTATTAAAACCCCTTTCTAATGTTAAAG i mm10.chr11 C 0 C 0 s canFam3.chr9 39340498 234 - 61074082 aGAACTGGAATGGAAGGTCACTGCCTGA----TGGTTCAATTTTGTTTTCCATCAAACC-------CAGTTCCAGTG--CTGTCTACTCCAGATGTGG---------------------------------------TGGGGAATGAGAAGTAGAAG-AAAGAGCACT----GGATTCTCTTACTGACT-ATGAGTCATGGACCAATCTCCTTTGTCTGTGGACCCCAT-TTCTTCACCTCTGATACAAAAAAAAGCTATTAGATGTCATC-AGAAATCTTTCTAATtttcaaa i canFam3.chr9 I 55 I 563 e chlSab2.chr16 9921136 3 - 75148670 I e papAnu2.chr16 47653324 0 + 74645514 C e macFas5.chr16 52608469 0 + 80997621 C e rheMac3.chr16 53085604 3 + 80904711 I a score=2698.000000 s hg38.chr17_JH159146v1_alt 104401 3 + 278131 TCC s panTro4.chr17 66224864 3 - 82630442 TCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24757102 3 - 73212453 TCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47980102 3 - 81552678 TCC i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112792256 3 + 159171411 TTC i calJac3.chr5 C 0 C 0 s mm10.chr11 99511110 3 + 122082543 CTC i mm10.chr11 C 0 C 0 e canFam3.chr9 39340732 563 - 61074082 I e chlSab2.chr16 9921136 3 - 75148670 I e papAnu2.chr16 47653324 0 + 74645514 C e macFas5.chr16 52608469 0 + 80997621 C e rheMac3.chr16 53085604 3 + 80904711 I a score=451263.000000 s hg38.chr17_JH159146v1_alt 104404 432 + 278131 ACATATTCTCTGCATTTCTGGATGAGGGATA-------------------AAGACTCCTTGGATGA-TTCTCACTGGAAGCTGTGATGAGC----TGGAGAAGGGTGCTTTGAAGAGTT-GAAAAGCAA----------------------------------------------GCTGTTGCTACTACAGATTATTTCTGTT-------CT--------------TGTATCAGGTGCTATTTGACCTTTC-TAAGGAAATAAAAGTACTGATAATTCAAT-CCCATTATTGTGCGGCAtggatgagtcagttaaatt-ttctgcccagcagtttcctcatctgtgaaatggggctattaataatatctacttcatgatggggttgtgaggattaaatgagttgatGATA--TTTATTAAATTATTGGTCA--TTATTGATTAACTCCATTTTATAAACAGGCGAATAGACACGAAGGAGGGGGGAATC----TGCATGTGTGGTTGTCTATCAAGCT-ATGCCCAAATCTAAAAG s panTro4.chr17 66224867 436 - 82630442 ACATATTCTGTGCATTTCTGGATGAGGGGTA-------------------AAGACTCCTTGGATGA-TTCTCACTGGAAGCTGTGATGAGCAAGCTGGAGAAGGGTGCTTTGAAGAGTT-GAAAAGCAA----------------------------------------------GCTGTTGCTACTACAGATTATTTCTGTT-------CT--------------TGTATCAGGTGCTATTTGACCTTTC-TAAGGAAATAAAAGTACTGATAATTCAAT-CCCATTATtgtgcggcatggatgagtcagttaaatt-ttctgcccagcagtttcctcatctgtgaaatggggctattaataatatctacttcatgatggggttgtgaggattaaatgagttgatGATA--TTTATTAAATTATTGGTCA--TTATTGATTAACTCCATTTTATAAACAGGCGAATAGACACGAAGGAGGGGGGAATC----TGCATGTGTGGTTGTCTATCAAGCT-ATGCCCAAATCTAAAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24757105 431 - 73212453 ACATATTCTGTGCATTTCTGGATGAGGGGTA-------------------AAGACTCCTTGGATGA-TTCTCACTGGAAGCTGTGATGAGCAAGCTGGAGAAGGGTGCTTTGAAGAGTT-GAAAAGCAA----------------------------------------------GCTGTTGCTACTACAGATTATTTCTGTT-------CT--------------TGTATCAGGTGCTATTTGACCTTTC-TAAGGAAATAAAAGTACTGATAATTCAAT-CCCATTATTGTGCGGCACggatgagtcagttaaatt-ttctgcccagcagtt---tcatctgtgaaatggggctattaataatatctacttcatgatggggttgtgaggattaaatgagttgatGATA--TTTATTAAATTATTGGTCA--TTATTGATTAACTCCATTTTATAAACAGGCGAATAGACATGAAG--GGGGGGAATC----TGCATGTGTGGTTGTCTATCAAGCT-ATGCTCAAATCTAAAAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47980105 435 - 81552678 ACATATTCTGTGCATTTCTGGATGAGGGGTA-------------------AAGACTCCTTGGATGA-TTCTCACTGGAAGCTGTGATGAGCAAGCTGGAGAAGAGTGCTTTGAAGAGTT-GAAAAGCAA----------------------------------------------GCTGTTGCTACTACAGATTATTTCTATT-------CT--------------TGTATCAGGTGCTATTTGACCTTTC-TAAGGAAATAAAAGTACTGATAATTCACT-CCCATTATTGTGAGGCAtggatgactcagttaaatt-ttctgcccagcagtttcctcatctgtgaaatggggctattaatagtatctacttcatggtggggttttgaggattaaatgagttgatGGTA--TTTATTAAGTTATTGGTCA--TTATTGATTAACTCCATTTTATAAACAGGCGAATAGACATGAAG--TGGGGGAATC---TTGCATGTGTGGTTGTCCGTCAAGCT-ATGCCCGAATCTAAAAG i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112792259 434 + 159171411 ACATATTCTGTGCATTTCTGGATGAGGGGTA-------------------AAAATTCCTCGGATGGTTTCTCACTGG-AGCTGTGATGAGTGAGCTGGAGAAGGGTACTTTGAAGAGTT-GGAAAGCAA----------------------------------------------GCTTTTGCTACTGCAGATTATGTCTGTT-------CT--------------TGTATCAGGTTCGATTTGACCTTCC-TAAGGAAATAAAAGTACTTACAATTCAAT-ctcattattgtgtggcgtggatgagtcagttaagtt-ttctgcccagcagtttcctcatctgtgaaatggggctattcatagtatctacttcatgatgggattgtgaggattaaatgagttgatGATA--TTTATTAAATTATTGACCA--CGATTGATTAGCTCTGTTTTATAAACAGGCAAATAGACATGAAG--AGGGGGACTC----TCTAAGTGTGGTTGTCTATCAAGCT-ATGTCTGAATCTAAGAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99511113 482 + 122082543 ACCTAGCCCGTGAA--CATGGGTGAAGAGGACTGTGGGTGCTAATGACACAAGGTTCATTT--TGGTTTCTCATTAGAGAC-------AGCAAGT--GGGAATGGAACTCAGAAGAGCT-GAaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaCCCCCAAAACCACCCACTAAAGCTAATGTGGATT---TCTGCTAGAGGAGAC--------------TGCATAATACATCATACAACA------AGGGAATTTAAAGCACTTAgacttcatcactcattattgtgcaactc---tgagt--gctaacat-ctgtaaccagtggtttctccaacggttcaatgatattattggtagtagctacattatgatggctgtgtgatcatcaaatgagttaaAAAAAACTTTGCTAATGTATT---------ATTGGCTTATCCCATTTTAGAGTCATGTAGATAGACATGGGG--AAGAGGAGCTGTCTGGGGGGTGAGGTCATTGATAAGGCTAATGTCAGAGTTTACAAG i mm10.chr11 C 0 I 456 s canFam3.chr9 39341295 469 - 61074082 ACTCAGTCTATGAATTTCTGGACAAAAAGAATGACAAAGGCTAATATCA-TAGATTCCTTGGATGGTCTCTCACTGGAATCATTGACAAGCAGGCTATAGAATAGTTCCTTGAAGAGTTGGAAAAATAA----------------------------------------------TCTGTTGCTACTGTGAATTGCTTCTATT-------CTTGGAGACTGTGAAATGTATCCCGTGCTATTTTAACTTTCTTAAGGAAATCAGAGTACTTAAAATTCAAT-cttattattgtgtgacactggggaaaacattgaattgctttacccattagttgctttatctgttaaatgggaatattagtggtagctcttccgtggtag-----taaggattaaatgaattagt--TA--TTAAATGAGTTACTTCTTAGCTTTTTTATTAATCCTCCTTCATAAACACATGGATAGATATGTAG--AGGAGGAATTGTC-TGTGAGCGTGGTCATCTATCAAGCTAGTGTCAGAGCTTAAAAG i canFam3.chr9 I 563 I 5 e chlSab2.chr16 9921136 3 - 75148670 I e papAnu2.chr16 47653324 0 + 74645514 C e macFas5.chr16 52608469 0 + 80997621 C e rheMac3.chr16 53085604 3 + 80904711 I a score=69057.000000 s hg38.chr17_JH159146v1_alt 104836 66 + 278131 CCTCAAATAAGTCATCAAGTCATTCAGATCTTTAAGCCAAAAGCCCCC-ATCAGTGATAAAGcagtg s panTro4.chr17 66225303 67 - 82630442 CCTCAAATAAGTCATCAAGTCATTCAGATCTTTAAGCCAAAAGCCCCCTATCAGTGATAAAGcagtg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24757536 67 - 73212453 CATCAAATAAGTCATCAAGTCATTCAGATCTTTAAGCCAAAAGCCCCCTGTCAGTGATAAAGcagtg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47980540 67 - 81552678 CCTCAAATAAGTCATCAAGTCATTCAGATCTTTAAGCCAAAAGCCCCCTGTCAGTGATAAAGcagtg i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112792693 67 + 159171411 CCTAGAATAAGGAATCAAGTCATTCAGATCTTTAAGCCAAGAGTCTCTTGTCAATGATAAAGCAGtg i calJac3.chr5 C 0 I 248 s canFam3.chr9 39341769 64 - 61074082 CCCCG---AAGGCAGCAAGTCATCCAGATCTTTAAACCAAAAAGCATTTGTCAGTTAGCAAGCAGTG i canFam3.chr9 I 5 C 0 e mm10.chr11 99511595 456 + 122082543 I e chlSab2.chr16 9921136 3 - 75148670 I e papAnu2.chr16 47653324 0 + 74645514 C e macFas5.chr16 52608469 0 + 80997621 C e rheMac3.chr16 53085604 3 + 80904711 I a score=205309.000000 s hg38.chr17_JH159146v1_alt 104902 279 + 278131 gcttt--taattcagtgcacacacttcagctgagacttttgttaaaatttggattcccaggtcccacagctggagatgcagatacaggaggtctggggtaaggcccaggaatctgaatGATACAGACTCCCCTATTAATGCAATTGCAGGTGGCTTCTGGGTCACACTGGAGAAGTTTTGGCGGGACGTCAGGTAAGGGGTTACCACTAACTGAACTCTGGAGGAAAAGTTTCTGGGTAGTCTCTTCTGATCAGCAATTGCTGGAATTGGCTCTGGGAAGT s panTro4.chr17 66225370 279 - 82630442 gcttt--taattccgtgcacacacttcagctgagacttttgttaaaatttggattcccaggtcccacacctggagatgcagatacaggaggtctggggtaaggcccaggaatctgaatGATACAGACTCCCCTATTAATGCAATTGCAGGTGGCTTCTGGGTCACACTGGAGAAATTTTGGTGGGACGTCAGGTAAGGGGTTACCACTAACTGAACTCTGGAGGAAAAGTTTCTGGGTAGTCTCTTCTGATCAGCAATTGCTGGAATTGGCTCTGGGAAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24757603 279 - 73212453 gcttt--taattcagtgcacacacttcagctgagacttttgttaaaatttggattcccaggtcccacacccggagatgcagatgcaggaggtctggggtaaggcccagaaatctgaatGATACAGACTCCCCTATTAATGCAATTGCAGGCAGCTTCCGGGTCACACTGGAGAAATTTTGGTGGGACATCAGGTAAGGGGTTACCACTAACTGAACTCTGGAGGAAAAGTTTCTGGGTAGTCTCTTCTGAGGAGCAATTGCTGGAATTGGCTCTGGGAAGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47980607 279 - 81552678 gcttt--taattcagtgcacacacttcagctgagacttttgttaaaatttggattcgcaggtcccacacctggagatgcagatgtaggatgtctggggtaaggcccaggaatctgaatGATACAGACTCCCCTATTACTGTGATTGCAGGTGGCTTCTGGGTCACACTGGAGAAATTTTGGTGGGAAGTCAGGTAAGGGGTTACCACTAACTGAACTCTGGAGGAAAAGTTTCTGGGTAGTCTCTTCTGAGCAGCAATTGCTGGAATTGGCTCTGGGAAGT i nomLeu3.chr19 C 0 C 0 s canFam3.chr9 39341833 279 - 61074082 GCTTTTATAATTTGGCGTACATGCTTTGGCTgaaaattttg-taaaatttggatgcccaggtcccacacctggagatgctaatgtaggaggtctagggtagggcccaagaatctgaattttataggttcctcaggggaCTTGGATAGAAGTGGTTTCTAGGTTA-ACTAGAGAAATCCTCGTGGCAAGTAATGTAAGGGGTTACCACTAACTGAACTCTTGAGGGAAAATTTTCAGGCCACTTCTTCTAAGCAGAAATTGCTGGAATTGATCCTAGAGGCT i canFam3.chr9 C 0 C 0 e mm10.chr11 99511595 456 + 122082543 I e calJac3.chr5 112792760 248 + 159171411 I e chlSab2.chr16 9921136 3 - 75148670 I e papAnu2.chr16 47653324 0 + 74645514 C e macFas5.chr16 52608469 0 + 80997621 C e rheMac3.chr16 53085604 3 + 80904711 I a score=87096.000000 s hg38.chr17_JH159146v1_alt 105181 98 + 278131 AAGGATGCAAAGGGTGTGGGCTGTGTGATGGGGGCAGGTGATGGGGGACAGTTAAGGGGTGAGAGGCAAGGAGAAAGGGGGAAGCGTGGTTACTTACC s panTro4.chr17 66225649 98 - 82630442 AAGGATGCAAAGGGTGTGGGCTGTGTGATGGGGGCAGGTGATGGGGGACAGTTAAGGGGTGAGAGGCAAGGAGAAAGGGGGAAGCGTGGTTACTTACC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24757882 98 - 73212453 AAGGATGCAAAGGGTGTGGGCTGTGTGATGGGGGCGGGTGATGGGGGACAGTTAAGGGGTGAGAGGCAAGGAGAAAGGGGGAAGCGTGGTTACTTACG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47980886 98 - 81552678 AAGGATGCAGAGGGTGTGGGCTGTGTGCTggggacaggtgacgggggacagttaaggggtgagaggcaaggagaaagggggaagCGTGGTTACTTACC i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112793008 93 + 159171411 AATGATATAGAGAGTGTAGGCTGTGTGCTGAGGGCAGGTGATGGGGGACAGTTGAGGGGTGA-AAGCAAAGGGAAAGGGGGAAGCGTGGTTACC---- i calJac3.chr5 I 248 C 0 s canFam3.chr9 39342112 81 - 61074082 GAAGATGGAGAGATTGTGAGTCATGTATAGGGGTTG------GGAAGGCAATTAATGATTGAGAGATGAAGGGGAAGAGAGAAGCAT----------- i canFam3.chr9 C 0 C 0 e mm10.chr11 99511595 456 + 122082543 I e chlSab2.chr16 9921136 3 - 75148670 I e papAnu2.chr16 47653324 0 + 74645514 C e macFas5.chr16 52608469 0 + 80997621 C e rheMac3.chr16 53085604 3 + 80904711 I a score=9594.000000 s hg38.chr17_JH159146v1_alt 105279 6 + 278131 TCTGTG s panTro4.chr17 66225747 6 - 82630442 TCTGTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24757980 6 - 73212453 TCTGTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47980984 6 - 81552678 TCTGTA i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52608469 6 + 80997621 TCTGTA i macFas5.chr16 C 0 I 1 s papAnu2.chr16 47653324 6 + 74645514 TCTgta i papAnu2.chr16 C 0 I 1 s calJac3.chr5 112793101 6 + 159171411 TCCATA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39342193 0 - 61074082 C e mm10.chr11 99511595 456 + 122082543 I e chlSab2.chr16 9921136 3 - 75148670 I e rheMac3.chr16 53085604 3 + 80904711 I a score=305823.000000 s hg38.chr17_JH159146v1_alt 105285 93 + 278131 TTTGGAAGAGTTTAAACTAGCTATGACATGAA-GTGGAGTCAACAAGAAGAAAGGAAAAAAATCTAGAAAAAATATATCTAAAATATCTCCCTT s panTro4.chr17 66225753 93 - 82630442 TTTGGAAGAGTTTAAACTAGCTATGACATGAA-GTGGAGTCAACAAGAAGAAAGGAAAAAAATCTAGAAAAAATATATCTAAAATATCTACCTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24757986 87 - 73212453 TTTGGAAGAGTT-----TAGCTATGACACGAA-GTGGAGTCAACAAGAAGAAACG-AAAAAATCTAGAAAAAATATATCTAAAATATCTCCCTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47980990 93 - 81552678 TTTGGAAGAGTTTAAACTAGCTATGACATGAA-GTGAAGTCAACAAGAAGAAAGGAAAAAAATCTAGAAAAAATATATCTAAAATATCTCCCTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53085607 93 + 80904711 TTTGGAAGAGTTTAAACTAGCTATGACATGAA-GTGGAGTCAACAAGAAGAAAGGAAAAAAATCCAGAAAAAATATATCTAAAATATCTCCCTT i rheMac3.chr16 I 3 C 0 s macFas5.chr16 52608476 93 + 80997621 TTTGGAAGAGTTTAAACTAGCTATGACATGAA-GTGGAGTCAACAAGAAGAAAGGAAAAAAATCCAGAAAAAATATATCTAAAATATCTCCCTT i macFas5.chr16 I 1 C 0 s papAnu2.chr16 47653331 93 + 74645514 tttggaagagtttaaacTAGCTATGACGTGAA-GTGGAGTcaacaagaagaaaggaaaaaaatacagaaaaaatatatctaaaatgtcTCCCTT i papAnu2.chr16 I 1 C 0 s chlSab2.chr16 9921139 93 - 75148670 TTTGGAAGAGTTTAAACTAGCTATGATGTGAA-GTGGAGTCAACAAGAAGAAAGGGAAAAAATCCAGAAAAAATATATCTAAAATATCTCCCTT i chlSab2.chr16 I 3 C 0 s calJac3.chr5 112793107 92 + 159171411 TTTTGAAGAGTTTAAACTAGCTATGATATAAA-GTG-AGTCAACAAGAAGAAAAGAAAAAAAATCTAGAAAAATATATCTAAAATATCTCCCTT i calJac3.chr5 C 0 I 210 s canFam3.chr9 39342193 90 - 61074082 -TTGGAAGTATTTAAACCAGCTGTCATATTAAGGTGGAGTCAACATGAAAAAAG--ACGAAATCTAGAGAAAATATATCCCTAA-ACCTCCTTT i canFam3.chr9 C 0 C 0 e mm10.chr11 99511595 456 + 122082543 I a score=466528.000000 s hg38.chr17_JH159146v1_alt 105378 159 + 278131 TTTAAGAAATATAATTATGGACCCTCAGAGTGAGAAGCAGAGATATAGGATTTGACCTCAGGCTCTGGACACCATGCTGTGTTTCCTGATTCATGGTTGTCTTTCGAACTGTGCTAAAATTACACTTTCCCTCCCCACGAGCCCCTTTTCTGCTCTAGC s panTro4.chr17 66225846 159 - 82630442 TTTAAGAAATATAATTATGGACCCTCAGAGTGAGAAGCAGAGATATAGGATTTGACCTCAGGCTCTGGACAGCATGCTGTGTTTCCTGATTCATGGTTGTCTTTCGAACTGTGCTAAAATTACACTTTCCCTCCCCACGAGCCCCTTTTCTGCTCTAGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24758073 159 - 73212453 TTTAAGAAATATAATTATGGACCCTCAGAGTGAGAAGCAGAGATATAGGATTTGACCTCAGGCTCTGGACACCATGCTGTGTTTCCTGATTCATGGTTGTCTTTTGAACTGTGCTAAAATTACACTTTCCCTCCCCACGAGCCCCTTTTCTGCTCCAGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47981083 159 - 81552678 TTTAAGAAATATAATTATGGACCCTCAGAGTGAGAAGCAGAGATATAGGATTTGACCTCAGGCTCTGGACAACATGCTGTGTTTCCTGATTCATGGTTGTCTTTCGAACTGTGCTAAAATTACACTTTCCCTCCCCACGAGCCCCTTTTCTGCTCCAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53085700 159 + 80904711 TTTAAGGAATAGAACTATAGACCCTCAGAGGGAGAAGCAGAGAGAGAGGATTTGACCTCAGGCTCTGGAGACCATGCTGTGTATCCTGATTCATGGTTGTCTTTTGAATTGTGCTAAAATTACAGTTTCCCTCCCCATGAGCCCCTTTTCTGCTCCAGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52608569 159 + 80997621 TTTAAGGAATAGAACTATAGACCCTCAGAGGGAGAAGCAGAGAGAGAGGATTTGACCTCAGGCTCTGGAGACCATGCTGTGTATCCTGATTCATGGTTGTCTTTCGAATTGTGCTAAAATTACAGTTTCCCTCCCCATGAGCCCCTTTTCTGCTCCAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47653424 159 + 74645514 TTTAAGGAATAGAAGTATAGACCCTCAGAGGGAGAAGCAGAGATAGAGGATTTGACCTCAGGCTCTGGAGACCATGCTGTGTATCCTGATTCATGGTTATCTTTCGAATTGTGCTAAAATTACAGTTTCCCTCCCCATGAGCCCCTTTTCTGCTCCAGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9921232 157 - 75148670 TTTAAGGAATAGAACTATAGACCCTCAGAGTGAGAAGCAGAGATACAGGATTTGACCTCAGGCTCTGGAGACCATGCTGTGTATCCTGATTCATGGTTGTCTTTCGAATTGTGCTAAAATT--AGTTTCCCTCCTCATGAGCCCCTTTTCTGCTCCAGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112793409 159 + 159171411 tTTAAGAAATATAATTATGGACCCTCGGAGTGAAAAGCAGAGAAGTAAGATTTGACCTCAGACTCTAGAGACCATGTTGTGTTTCCTGATTCATGTTTGTCTTTCGAGCTGTGCTAAAATTATAGTTTCCCTCCCTGCAAGCCCCTTTTCTGCTCCAGC i calJac3.chr5 I 210 C 0 s canFam3.chr9 39342283 70 - 61074082 GTTTAGAAATAAAATTATGGACCACCAAA----------------TGGGTTTTGA-----------------------------------------------------------------TATTCTTTCCCTCTCTGAGA--------CAGGCTCTAGC i canFam3.chr9 C 0 I 69 e mm10.chr11 99511595 456 + 122082543 I a score=117541.000000 s hg38.chr17_JH159146v1_alt 105537 39 + 278131 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC s panTro4.chr17 66226005 39 - 82630442 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24758232 39 - 73212453 TGCTGACTT-CTGCTGAAC--TGTCATAAAACCTTAAATTTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47981242 39 - 81552678 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53085859 39 + 80904711 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52608728 39 + 80997621 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47653583 39 + 74645514 TGCTGACTT-ATGCTGAAC--TGTCATAAAACCTTAAATTTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9921389 39 - 75148670 TGCTGATTT-ACGCTGAAC--TGTCATAAAACCTTGAATTTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112793568 42 + 159171411 TGCTGACTTAATGCTGAACTATGTCATAAAACCTTGAACTCC i calJac3.chr5 C 0 C 0 e canFam3.chr9 39342353 69 - 61074082 I e mm10.chr11 99511595 456 + 122082543 I a score=390612.000000 s hg38.chr17_JH159146v1_alt 105576 124 + 278131 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCTAG-TAAAAATCCAGTCTCCTTATTGCCTTTA--------AAAGTTTTGACCACATGCATACAA---CCAGCAA--ATGGTTTTACATTCTCTTATACGAAGA s panTro4.chr17 66226044 124 - 82630442 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCTAG-TAAAAATCCAGTCTCCTTAGTGCCTTTA--------AAAGTTTTGACCACATGCATACAA---CCAGCAA--ATGGTTTTACTTTCTCTTATACGAAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24758271 124 - 73212453 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCTAG-TAAAAATCCAGACTCCTTATTGCCTTTA--------AAAGGTTTGACCACATGCATACAA---CCAACAA--ATGGTTTTACATTCTCTTATACGAAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47981281 124 - 81552678 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCTAG-TAAAAATCCAGACTTCTTATTGCCTTTA--------AAAGGTTTTACCACATGCATACAA---CCAGCAA--ATGGTTTTACATTCTCTTATACGAAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53085898 124 + 80904711 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCCAG-TAAAAATCCAGACTTCTTATTTCCTTTA--------AAAGGTTTGACCACACGCGTACAA---CCAGCAA--GTGGTTTTACATTCTTTTATCTGAAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52608767 124 + 80997621 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCCAG-TAAAAATCCAGACTTCTTATTTCCTTTA--------AAAGGTTTGACCACACGCGTACAA---CCAGCAA--GTGGTTTTACATTCTTTTATCTGAAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47653622 124 + 74645514 CTCCTGTGGCTATGTAGGATACTTATTTAGCCTCCCAG-AAAAAATCCAGACTTCTTATTTCCTTTA--------AAAGGTTTGACCACACGCATACAA---CCAGCAA--GTGGCTTTACATTCTTTTATATGAAga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9921428 124 - 75148670 CTCCTGTGGCTGTGTAGGATACTTATTTAGCCTCCCAG-TAAAAATCCAGACTTCTTATTTCCTTTA--------AAAGGTTTGACCACACGAGTACAA---CCAGCAA--GTGGTTTTACATTCTTTTATATGAAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112793610 124 + 159171411 CT-TTGGGGCTGTAAAGGATACTTACTTAGCCTCCCAGTTAAAAATCCAGATTTCCTATTGCCTTTA--------AAAGGTTTGACCACATGCATACAA---CCAGAAA--ATGGTTTTACATTCTCTTATACAAAGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99512051 135 + 122082543 CCCCTGTGGCTGTATAGGATACTTAATCAGTTTTCTAG--AAAAATCTCGACTTGATACTGCTTTGATTTATTTTATGTTTTTGGCCATAGGCAAAGAAAATCCTGAAGCTATAGTTTTACATGCTCATATACAAAG- i mm10.chr11 I 456 C 0 e canFam3.chr9 39342353 69 - 61074082 I a score=169337.000000 s hg38.chr17_JH159146v1_alt 105700 69 + 278131 AGACACTT-----AAAAAAAAAA-AC--AAAACTGCAA--GCCTTCGAGTGGCTAACTCCCCTCTTTACTGTGCAGCTT s panTro4.chr17 66226168 70 - 82630442 AGACACTT-----AAAAAAAAAACAA--AAAACTGCAA--GCCTTCGAGTGGCTAACTCCCCTCTTTACTGTGCAGCTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24758395 67 - 73212453 AGACACTT-----AAAAAAAGAG-----AAAACTGCAA--GCCTTCGAGTGGCTAACTCCCTGCTTTACTGTGCAGCTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47981405 66 - 81552678 AGACACTT-----AAAGAAAAAA------AAACTGCAA--GCCTTCAAGTGGCTAACTCCCCTCTTTACTGTGCAGCTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53086022 69 + 80904711 AGATACTT-----AAAAAAAAAA-AA--AAAGCTGCAA--GCCTTCGAGTGGCTAACTCCCCTCTTTACTGTGCAACTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52608891 69 + 80997621 AGATACTT-----AAAAAAAAAA-AA--AAAGCTGCAA--GCCTTCGAGTGGCTAACTCCCCTCTTTACTGTGCAACTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47653746 66 + 74645514 agatactt--------aaaaaaa-aa--aaagctgcaa--gcCTTCGAGTGGCTAACTCCCCTCTTTACTGTGCAACtc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9921552 74 - 75148670 AGATACTTaaaaaaaaaaaaaaa-aa--aaaGCTGCAA--GCCTTCCAGTGGCTAACTCCCCTCTTTACTGTGCAACTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112793734 64 + 159171411 AGACACTT-----AAAAAAAAAC--------GCTGCAA--GCCTTCAAGTGGCTAACTTCCCTTTTTACTGTGCAGTTT i calJac3.chr5 C 0 I 304 s mm10.chr11 99512186 52 + 122082543 -------------GAAACAGGAA------------TAG--GTCTTAGAGGTGCCAGGTTTTGTTTTTATTATGCAGATC i mm10.chr11 C 0 C 0 s canFam3.chr9 39342422 68 - 61074082 AGACTTTC-----AGAGAAAGGA-ACCTGGTGTTATAACTGCCCTACAGGACTAGGATCCTGTCTTTTTGGTTT----- i canFam3.chr9 I 69 C 0 a score=6004602.000000 s hg38.chr17_JH159146v1_alt 105769 1624 + 278131 ATAATCATATA-----TTT--TTTAAAACCATGAATGGCAT-GGGGGATATTTTGCTCTCCATAGGAGGAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCATCAGTTCAATCTTAGCTTGAGTCCAGTGAGATTCCTCAACCCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATATATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGAAGGTATTGATGGAAACGACATGTGTCTAGGTTTAAATATAGGGAATAGGAATGCCCTtctgcaaagcaccttaca--gtttatgagaccctttcaccattattattccattttatccttgcagccgtgtggtaggcagggcttatattgttatatcctatttactcgaggtcatacatgcccaggctggattgagactccgtcccaaggtttctgaatcccagttccatgctctttccacATTTTCATCCTGCAGCCTGAGATAGTACGCAGTTAACTACTGACCGGAGGTACTCTGCCCACTCAGATGAGAGAGAAATTATTGATTTAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCAAGCTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGCATTATTGACTCATTGATATGCGATACATACCCTAAGAACTGAAAAATGCTTTATTGAGTAGAATTGTGGGCCTGATCACAGGAA-ATCATG------TTTTTTTT-----TCTCCTA----AAAGTTAAACACTATT-AAAACT-CCAAAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGATAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAAttacattgg-gtggtgcttttcagcattcaaagcagtgtcacataaacaatttcatttgatcatcacaacaaccctgtgaagtaggcatgatcctcatttaacaaacacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtaggacttcaggccttttgactaccca-tctgtgttTGATTTTGAATTATTTCTTAAA------ACCTCTGGCAATGTCCAATG-ATTATTGTCAGGAATGACTTACATATTCTGAGACTATCCTGTAAGAAGCTGTGATGATGGCTGGTATATAAATGATGCC-TTCTCACATTGGGA-CTGCCTTGCACTTACAAGCAGCAATTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAATTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCACAACT-TATC-TGATTCT---CAAATAAAATATTTGG---AGAGCCTAATAGGTCACAAAGTTTTGGAGACCATGGACATTT s panTro4.chr17 66226238 1621 - 82630442 ATAATCATATA-----TTT--TTTAAAACCATGAATGGCAT-GGGGGATATTTTGCTCTCCATAGGAGGAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCATCAGTTCAATCTTAGCTTGAGTCCAGCGAGATTCCTCAACCCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATATATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGAAGGTGTTGATGGAAATGA--TGTGTCTAGGTTTCAATATAGGGAATAGGAATGCCCTtctgcaaagcaccttaca--gtttacgagaccctttcaccattattattccattttatccttgcagccgtgtggtaggcagggcttatattgttatatcctatttactcgaggtcatacatgcccaggctggattgagactccgtcccaaggtttctgaatcccagttccatgctctttccacATTTTCATCCTGCAGCCTGAGATAGTACGCAGTTAACTACTGACCGGAGGTACTCTGCCCACTTAGATGAGAGAGAAATTATTGATTTAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCAAGCTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGCATTATTGACTCATTGATATGCAATACATACCCTAAGAACTGAAAAATGCTTTATTGAGTAGAATTGTGGGCCTGATCACAGGAA-ATCATG------TTTTTTTT-----TCTCCTA----AAAGTTAAACACTATT-AAAACT-CCAAAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGATAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAAttacattgg-gtggtgctttccagcattcaaagcagtgtcacataaaccatttcatttgatcttcacaacaaccctgtgaagtaggcatgatcctcatttaacaaacacagaaattaaatttgaggaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtaggacttcaggccttttgactACCCA-TCTGTGTTTGATTTTGAATTATTTCTTAAA------ACCTCTGGCAATGTCCAATG-ATTATTGTCAGGAATGACTTACATATTCTGAGACTATCCTGTAAGAAGCTGTGATGATGGCTGGTATATAAATGATGCC-TTCTCACATTGGGA-CTGCCTTGCACTTACAAGCAGCAATTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAATTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCC-ACAACT-TATC-TGATTCT---CGAATAAAATATTTGG---AGAGCCTAATAGGTCACAAAGTTTTGGAGACCATGGACATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24758462 1623 - 73212453 ATAATCATGTA-----TTT--TTTAAAACCATGAATGGCAT-GGGGGATATTTTGCTCTCCATAGGAGGAAGACATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGTATCAGCTCAATCTTAGCTTGAGTCCAGCGAGATTCCTCAACCCT-A--------------------------------ATTTTGC---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATATATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGACGGTGTTGATGGAAATGACATGTGTCTAGGTTTCAATATAGGGAATAGGAAAGCCCTtctgcaaagcaccttaca--gtttacgagaccctttcaccatcattattccattttatccttgcagccgtgtggtaggcagggcttatattgttatatcctatttactcgaggtcatacatgcacaggctggattgagactctgtcccaaggtttctgaatcccagttccatgctctttccacattttcatcctgcAGCCTGAGATAGTACGCAGTTCACTACTGACCGGAGGTACTCTGCCCACTCAGATGAGAGAGAAATTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTGCTTGTCTGGAGGAAGTAAATCATTGAACTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGC---ATTGACTCATTGATATGTGATACATACCCTAAGAATTGGAAAATGCTTTATTGAGTAGAATTGTGGGCCTGATCACAGGAA-ATCATA------TTTTTTTTTC---TCTCTTA----AAAGTTAAACACTATT-AAAACT-CCAAAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGATAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAAttacactgg-gtggtgcttttcagcattcaaagcagtatcgcataaacaatttcatttgatcttcacaacaaccctgtgaagtaagcatgatcctcatttaacaaacacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtaggatttcaggccttttgacttcTCA-TCTGTGTTTGATTTTGAATTACTTCTTAAA------ACCTCTGGCAATGTCCAATG-ATTATTGTCAGGAATGACTTACATATTCTGAGACTATCCTGTAAGAAGCTGTGATGATGGCTGGTATATAAATGATGCC-TTCTCACATTGGGA-CTGCCTTGCACTTACAAGCAGCAATTATTCACT-ATTGCTTTTCTGTAAAATGTGTGGATATTATGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTACGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAATTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAACGTTTAATGAAAAGACCCATGCTCTTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCACAACT-TATC-TGATTCT---CAAATAAAATATTTGG---AGAGCCTAATAGGTCACAAAGTTTTGGAGACCATGGGCATTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47981471 1621 - 81552678 ATAATCATGTA-----TGT--TTTAAAACCATGAGTGGCAT-AGGGGATATTTTGCTCTCCATAGGAGGAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCATCAGCTCAATCTTAGCTTGAGTCCAGCGAGATTCCTCAA-CCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATATATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGAAGGTGTTGATGGAAACGACATGTGTCTAGTTTTCAATATAGGGAATAGGAATGCCCTTCTGCCAagcaccttaca--gtttacaagaccctttcaccatcattattccattttatccttgcagccgtgtggtaggcagggcttatattgttatatcctatttactcgaggtcatacatgcacaggctggattgagactctgtcccaaggtttctgaatcccagttccatgctctttccacattttcatcctgcAGCCTGAGATAGTACGCAGTTAACTACTGACTGGAGGTACTCTGCCCACTCAGATGAGAGAGAAATTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCATTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCGAGCTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGAC---ATTGACTCATTGATATGTGATACATACCCTAAGAATTGAAAAATGCTTTATTGAGTAGAATTGTGGGCCTGATCACAGGAA-ATCATG------TTTTTTTTTT---TCTCCCA----AAAGTTAAACACTATT-AAAACT-CCAAAATCATGACTGGATAACTAAATTCGTGAAGAAAGAATTTTAAAATGAGATAATTAC-----AAAAATAGGTCTAGAGCTGTAGCTAAAACCAAAACTTACATAAAAAttacgttgg-gtggtgcttttcagcattcaaagcagtgtcacataatcaatttcatttgatcttcacaacaaccctgtgaagtaggcatgatcctcatttaacaaacacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtaggacttcaggccttttgacttcccg-tctgtgttTGATTTTGAATTATTTCTTAAA------ACCTCTGGC-ATGTCCAATG-ATTATTGTCGGGAATGACTTACATATTCTGAGACTATCCTGTAAGAAGCTGTGATGATGGCTGGTATATAAATGATGCC-TTCTCACATTGGGA-TTGCCTTGCACTTACAAGCAGCAATTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-TTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATATATTTTTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAACAGAAAGAGAAATAGCAAACATTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCACAACT-TATC-TGATTCT---CAAATAAAATATTTGG---AGAGCCTAATAGGTCACAAAGTTTTGGAGACCATGGACATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53086091 1622 + 80904711 ATAATCATGTA-----TTT--TTTTAAACCGTGAATGGCATGGGGGGATATTTTGCACTCCATAAGAGAAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCACCAGCTCAAGGTTAGCTTGAGTCCAGTGAGATTCCTCAACCCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATAAATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGAAGGTGTTGATGGAAATGACATGTGTCTAGTTTTCAATGTAGGGAATAGGAATGCCCTtctgcaaagcaccttaca--gtttacaagaccctttcaccatcgttattccattttatccttatagccctgtggtaggcagggcttatattgttataccctatttactcgaggtcatacatgcacaggctggattgagactccgtcccaaggtttctgaatcccagttccatgctctttccacattttcatcctgcAGCCTGAGATAATACGCAGTTAACTGCTGACCGGAGTTACTCTGCCCACTCAGATGAGAGAGAACTTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATTGAACTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGC---ATTGACTCACTGATATGTGATACATACCCTAAGAATTGAAAAATGCTTTATTGAGAAGAATTGTGGGCCTGATCACAGGAA-ATCGTG-------TTTTTCTTT---CCTCCCA----AAAGTTAAACACTATT-AAAACT-CCAGAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGCTAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAAtcacattgg-gtggtgcttttcagcattcaaagaagtgtcacataaacaatttcatttgatcttcacaacaaccctgtgaagtaggcatgatcctcatttaagaaacacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtagaacttcgggccttttgactTTCCA-TCTGTGTTTGATTTTGAATTATTTCTTAAA------ACCTCTGGCAATGTCC-ATG-ATTATTGTCGGGAATGACTTACATATTCTGTGACTATCCTGCCAGAAGCTGTGATGATGGCTGGTATGTAACTGATGCC-TTCTCACATTGGGA-CTGCCTTGCGCTTACAAGCAGCAACTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAGACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCGCAACT-TATC-TGACTCT---CAAATAAAATATTTGG---AAAGCCTAATAGGTCACAAAGTTTCGGAGACCATGGACATTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52608960 1622 + 80997621 ATAATCATGTA-----TTT--TTTTAAACCGTGAATGGCATGGGGGGATATTTTGCACTCCATAAGAGAAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCACCAGCTCAAGGTTAGCTTGAGTCCAGTGAGATTCCTCAACCCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATAAATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGACGAAGGTGTTGATGGAAACGACATGTGTCTAGTTTTCAATGTAGGGAATAGGAATGCCCTtctgcaaagcaccttaca--gtttacaagacccttttaccatcgttattccattttatccttatagccctgtggtaggcagggcttatattgttataccctatttACTTGAGGTCATACATGCACAGGCTGGATTGAGACTCCGTCCCAAGGTTTCTGAATCCCAGTTCCATGCTCTTTCCACATTTTCATCCTGCAGCCTGAGATAATACGCAGTTAACTGCTGACCGGAGTTACTCTGCCCACTCAGATGAGAGAGAACTTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATTGAACTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGC---ATTGACTCACTGATATGTGATACATACCCTAAGAATTGAAAAATGCTTTATTGAGAAGAATTGTGGGCCTGATCACAGGAA-ATCGTG-------TTTTTTTTT---CCTCCCA----AAAGTTAAACACTATT-AAAACT-CCAGAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGCTAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAATCACAttgg-gtggtgcttttcagcattcaaagaagtgtcacataaacaatttcatttgatcttcacaacaaccctgtgaagtaggcatgatcctcatttaagaaacacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtagaacttcgggccttttgactTTCCA-TCTGTGTTTGATTTTGAATTATTTCTTAAA------ACCTCTGGCAATGTCC-ATG-ATTATTGTCGGGAATGACTTACATATTCTGTGACTATCCTGCCAGAAGCTGTGATGATGGCTGGTATGTAACTGATGCC-TTCTCACATTGGGA-CTGCCTTGCGCTTACAAGCAGCAACTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAGACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCACAACT-TATC-GGACTCT---CAAATAAAATATTTGG---AAAGCTTAATAAGTCACAAAGTTTCGGAGACCATGGACATTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47653812 1618 + 74645514 ataatcatgta-----ttt--tttaaaaccgTGAATGGCAT-GGGGGATATTTTGCACTCCATAGGAGAAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCACCAACTCAAGGTTAGCTTGAGTCCAGTGAGATTCCCCAACCCT-A--------------------------------ATTTTGT---------AGCTTGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATAAATA----TCAAGGTCCACCTGGGCCCAGCactgaaccagaaagaaaggaagaaggtgtTGATGGAAATGACATGTGTCTAGTTTTCAATGTAGGGAATAGGAATGCCCTTCTGCAAAGCACCTTACA--GTTTACAAGACCCTTTCACCATCGTTATTCCATTTTATCCTTACAGCCACGTGGTAGGCAGGGCTTATATTGTTATACCCTATTTACTCGAGGT----CATGCACAGGCTGGATTGAGATTCCGTCCCAAGGTTTCTGAATCCCAGTTCCATGCTCTTTCCACATTTTCATCCTGCAGCCTGAGATAATGCGCAGTTAACTGCTGACTGGAGTTACTCTGCCCACTCAGATGAGAGAGAACTTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCGAACTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGC---ATTGACTCACTGATATGTGATACATACCCTAAGAATTGAAAAATGCTTTATTGAGAAGAATTGTGGGCCTGATCACAGGAA-atcgtg------tttttttttt---cctccca----aaagTTAAACACTATT-AAAACT-CCAGAATCATGACTGGATAACTAAATTcatgaagaaagaattttaaaatgagcgAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAATCACATTGG-GTGGTGCTTTTCAGCATTCAAAGAAGTGTCACATAAACaatttcatttgatcttcacaacaaccctgtgaagtaggCATGATCCTCATTTAACAAACACAGAAATTAAATTTGATGAAGTCTAAATGTTTTCCCCAAGGTCACAGCTGGGAAAT--GCAGGTGTAGAACTTCGGGCCTTTTGACTTTCCA-TCTGTGTTtgattttgaattatttcttaaa------acctCTGGCAATGTCC-ATG-ATTATTGTCGGGAATGACTTACATATTCTGTGACTATCCTGCCAGAAGCTGTGATGATGGCTGGTATGTAACTGATGCC-TTCTCACATTGGGA-CTGCCTTGCGCTTACAAGCAGCAACTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGACGGATATATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCttcacagggaggggaag----aagggtTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAaagaatagaaagagaaataGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTCC---------------TAGATTCACTCCCCACAACT-TATC-TGactct---caaataaaatatttgg---aaagcctAATAGGTCACAAAGTTTCGGAGAccatggacattt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9921626 1628 - 75148670 ATAATCATGTA-----TTT--TTTTAAACCGTGAATGGCAT-GGGGGATATTTTGCATTCCATAGGAGAAAGGCATCCTACTTCTAGG-ATAAACTGAAAATGGCACTGCTGCACCAGCTCAAGGTTAGCTTGAGTCCAGTGAGATTCCCCAACCCT-A--------------------------------ATTTTGT---------AGCTCGGAGCAGAT---------T----------------------------------TTAGTGTGGATGATAAATA----TCAAGGTCCACCTGGGCCCAGCACTGAACCAGAAAGAAAGGAAGAAGGTGTTGATGGAAACGACATGTGTCTAGTTTTCAATGTAGGGAATAGGAATGCTCTtctgcaaagcaccttaca--gtttacaagaccctttcaccatcattattccattttatccttacagccgtgtggtaggcagggcttatattgttataccctatttACTTGAGGTCATACATGCACAGGCTGGATTGAGACTCCGTCCCAAGGTTTCTGAATCCCAGTTCCATGCTTTTTCCACATTTTCATCCTGCAGCCTGAGATAATACGCAGTTAACCGCTGACCGGAGTTACTCTGCCCACTCAGATGAGAGAGAACTTATTGATTAAAAAGAGGTCATTCTGGGAGTTCTGCATTCCACTTGCCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCGAACTGTAAGTTACACAATGCATGTGTCTTTGATGTGGGCATCAGGC---ATTGACTCACTGATATGTGATACATACCCTAAGAATTGAAAAATGCTTTATTGAGAAGAATTGTGGGCCTGATCACAGGAA-ATCATGGTGTTTTTTTTTTTTT---CCTCCCA----AAAGTTAAACACTATT-AAAACT-CCAGAATCATGACTGGATAACTAAATTCATGAAGAAAGAATTTTAAAATGAGATAATTAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAATCACAttgg-gtggtgcttttcagcattcaaagaagtgtcacataaacaatttcatttgatcttcacaacaaccctgtgaagtaggcatgatcctcatttaacaaatacagaaattaaatttgatgaagtctaaatgttttccccaaggtcacagctgggaaat--gcaggtgtagaacttcgggccttttgactTTCCA-TCTGTGTTTGGTTCTGAATTATTTCTTAAA------ACCTCTGGCAATGTCC-ATG-ATTATTGTCGGGAATGACTTACATATTCTGTGACTATCCTGCCAGAAGCTGTGATGATGGCTGGTATGTAACTGATGCC-TTCTCACATTGGGA-CTGCCTTGCGCTTACAAGCAGCAACTATTCACT-ATTGCTTTTCTGCAAAATGTGTGGATATTATGTCCATTTA-CTCTGACGGACAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAG----AAGGGTTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATAGCAAATGTTTAATGAAAAGACCCATGCTATTTCTTCAAAGTGTTC---------------TAGATTCACTCCCCACAACT-TATC-TGACTCT---CAAATAAAATATTTGG---AGAGCCTAATAGGTCACAAAGTTTCGGAGACCATGGACATTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112794102 1603 + 159171411 ATAATCATGTATTTTTTTT--TTTTTAATCACGAATGGCAT-GGGGGATATTTTGCTCTGCAAGGGAGGAAGTCATTCTGTTTCTAGG-ATAAATTGAGAACGGCACTGCTGCGTCAGCTCAAGGTTAGCTTGAGTCCAGTGAGATTCCTAAACCCT-G--------------------------------ATTTTGT---------AGCCCAG--------------------------------------------------------------GACATGTA----TCAGGGTCCACCTGGGCCCAGCACTGAACTAAAAAGAAAGGAAGAAGG-GTGGATGAAAATGACC--CGTCTAGTTTTCAATTTAGGGAATAGGAATGCTCTtctgcaaagcaccttatg--gtttatgagaccctttcaccatcacagttccactttatccttacaaccgtgtgataggtagggcttatgttgctatattccatttgctcaaggtcatatgtgcacgggctggattgagactccgtcccaaagtttctgaatcccagtcccatgctctttccacattttcatcctgcAGCCTGAGATGGTGCTTAGATAACCACTGACCAGAGATACCCTGCCCACTCAGAGGAGAGAGAAATTATTGATTAAAATGAAGTCATTCCGGGAGTTCTGCATTCCACTTGGCTAGTGTAAGTTGCTACTTGTCTGGAGGAAGTAAATCATCGAGCTGCAGGTTACACAATGCGTGTGTCTTTGATGTGGGCATCAGGC---ATTGAC----TGATATGTGATACATACCCTGAGAATTGAAAAATGCTTTATTAAGTAGAATTGTGGGCTTGATCACAGGAA-ATCATG--TTTCTTTTTTTTTT---TCTCCCA----ACAGTTAAACACTATT-AAAACT-CCAAAATCATGACTGGATGGCTAAATTCATGAAGAAAGAA-TTTAAAATGAGGTAATGAC-----AAAAATAGGTCTAGGGCTGTAGCTAAAAGCAAAACTTACATAAAAATAGcattggtgtcgtgcttttcagcattcaaagcagtatcacacaagccatttcatttgaccttcacaacaaccctgtgaagtaggcatgatcagcgtttaacaaacacagaaattcagtgtgatgaagtctaagtgttttccccagcatcacagctgggaaat--gcaagtgta--------ggccttttgacctcaca-tctGTGTTTGATTTTGAATTATTTCTCAAA------ACCTCTGACAATGTCCAATG-ATTATTATTGGGAATGACTTACATATTCTGTGACTATCCTGTAAGAAACCGTGATGACGGCTGGCATATGAATGATGCC-TTCTCACACTGGGA-CTGCCTTGCGCTTACAAGCAGCAATTATTCACT-ATTGCTTTTCTGCAAAATGGGTGGATATTAAGTCCATTTA-CTCTGATGGATAGATTGAAGCAGGAATCTAAGCTATGTTTTTCTTTGTCACTCTTCACAGGGAGGGGAAGAAGCAAGGGTTATTTCTTGAGAGTTCCAGCTAAATGTTCCTTGTCAAACAATCAGAACAAACTCCCATTCCCTAAAGAATAGAAAGAGAAATTGCAAACGTTTAATGAAAAGACCCATGCTATTTCTTCTGAGTGTTC---------------TAGATTCACTTCCCACAACTATATC-TCATTCT---CAAATAAAATATTTGG---AGAGCCTAATGGGTCACAAAGTTTTGGAGAACATGGACATTA i calJac3.chr5 I 304 C 0 s mm10.chr11 99512238 1615 + 122082543 ATAGTATTTTA-----TTTTATTTTTTGCATGGGGTGGCAT-GGGGGATATTTTGATCAGAGTAGGAGAAAGGTGTCTTCTTTTGGGGCATAAATGGAGAGTGTCATTGTTGCATCTGCCCAAGGTTA-------------GAGGTTCCTAAATCCT-AGGTTCAGATGGAATCAAGAGAGCAAGGTGAGTACCTCTC---------ACCTCTTAGCAAACAACTTCTTAT----------------------------------TTAGTGTTGATGGTGTATAGCAGGCAGGATCTACCT-GGCCTAGCACGGAGTCAAACCAAAAGGAAACAACTATGGATAAAAATGACACATGTCTAGTGCCCAATTTAAGGACCAAGAACTTATTTCTGCCTAGCACTACGCATCATTTACAAAGTCT--------TCATTAGCCCATTGAACCCTTCCA-TTATATGCCAGGCAAGGCCAATGCTGTTAAATCACTTTTACTCAAGGTCACACACACACACCCTGGGTGGAAGCTGT---TCATGGTTTCTGAGCACCATGTCTTTACTCTGTCCATAGTGCCATCTTGCAGACTGAGCCAATACATAGTGAGGGGCTGACAGGAGTGACTCTG----CTTATGTCATTGAGAAACTGACAAC--AGAAGAGACTCTTCCTGGAGGCTTGCATCCCATCTGCCTTGTGTAAGCCACTGTTCTTCTGGAGGAAGCATTCGGCTGAGCTGTGAGTCCAGCACCGCAAATGTCTTTGATGTGAGCATCA--------------ACTGGTATCTGACACACACTCTAAGAATTCAGAGATGCTTTATTTAGTATAATTATGAGTATAATCACAG-------ATG------TTCTATTTTTGCACCCCCCACACCATTGCTGAACATTGTTAAAAACT-TTTGAATCATGACTGGATAACTAAATTCGCAGAGAAAGAATTTTAAAATGAAGTAATGATGAAAGAAAATTAAGTCTAGCTAATTAGCTAATGGCTAAACATACACAAGGACCA-----G-GT----------------------------ACAGAATGGGTTTCAAGTGATCTCCACAACAGCCCTTTGAAGCAGGTGTGACCCTCAGTGAGTAAATAAGGATATC-AGTTTGAGGAAGGCTGGACATTTTATGCAGAGTCAT-GATAGGAAATTGGCAAGTTTAAGAA-TCAGGTCTTGGAACTCTACAGTTTGTGTTTGATTTAGACTTTTTTTTTTAAGCTGACACCTCTGAAAAGGTCCAATATATTTTTTTTAAGAATGACTCCCCTGCTCTGTGGACCTGCT-CTAAAAGTTGTGATACTGGCTGG-AGCTGAATGGTGAC-TGCTGGTATTTGCAGCAGCCTCTTACTGGCAAGCAGAAATTACTCACT-AATGCTCTTTTGGAAAGTTTGGTGCTCTTAATTCCATCCCTCTCTGATGGAAGGATTGATGCAGGCATCTAAGCTAT-TTTGTCCTTGTTACCCATC------------------AGGTCTTATGTCTTGAGAAATCCAGCTCTATGCCCATTGTCAAACAAGCAGATCAAACTCCCATACCCTAAGGGATAGGAAGAGAAACAGCCAACCTTTAATGAGCGGACCCAGGCTATTGCTTCAACATGATCCTAAAGAGAGACCCTTGGATTCATACTACACAACT-AATCTTCATTCT---TAAAGAAAGTATTTGGAGAAGAGCCTTGTGGTTCCTCAAGTTTCAGAGACTGTGGACATCT i mm10.chr11 C 0 I 142 s canFam3.chr9 39342490 1623 - 61074082 -CAAATACCTA-----TAA--TTT--GGCCGAGTGTGGCAC-A----------TGCCTGGAGTGGGAAGAAGAGATCTTGTTTTGTGG-ATAAACTGAGAATGCCATAG------CAGCCCAAGCTTAGCCTGAGTCCAGAAAGGTTCCTAAACTCTGA--------------------------------ATCCTGTTGAAATCAAAACTTAGGGCAGAC---------TGAGAACTCCAGCCTCTCCTTAACTGGTTTTCCAGTTAGTGTTGATAGTACATA----T-GTGATCCACTGGGGACCATCACTTAACCAGACACACAGGAAGAAG-TATGTAAGGAAATGACAAATGCCTGGTTTCCAAT-CAGGGGACAAAACCTCCCTTCTGCCTGGCCTTGTATA--ACTTAAAGGACCCTTTCACTATTATTATTCCATTTAATCCCTCTAG---TGTGTTAG----GGCCTACATCTTTATGTCCCTTttactcaaggtcataca--catagaatggggtgagactctctcctatggcttctgagtgcaagccccctgctcttcccacATTTCTATCATTCAGTCTGAGATGGTATGCAGTGATGTGCT-ACCAGGGGTAATCTGGGAATTTGGATGGGAAGGAAGTTATTGACAAGAAAGAGATCTCTCTGGGAGTTCTGCATTCCACTCCCTCAGTGCAAGTTGCTACTAGTCTGGAGGAAGTGGCT-GCTGAGC-ATGAGTTAAACGACACTTTTGTCTTTGCTGTGGGCACCAGCC---ATCAAC----TGATATCTGATATAGACCCTA--ACTTCAGAAACACTTTACTGAGTAAAATTGCAGGCTTGATGACAAGAAGATCTTG-TTCTGTTCTTTTTTC---ACCCCTC----AAAGCCAAGCACTATT-AAAACTCCCCAAATCATGAGTGGATAACTAAATTTATGGGGAAAGAATTTTGACATGAGATAATAAC---------ACAGGTCTAGGGCTGTAGTTAAAAGTAAAGCTTATGTAAAAATAacatttgcaccatgttcttcagtgtactaagtagcatgatatgaacaatttcatttgatctgcacaacaaacctgtcaagtagccaaggttctcatttaacaaataaggaaattaaatttgatgaaggctagatgttttgtctaaggtctca------agaa--actagtttaggacttcaggtctt-tgactccacattcTATATTTAATTTGTAATTATTTACTAAA------ACTTCTGGAAATACTGAATA-ATTTTTGTAGGGATTGACTGAATCTCTTTGTGACCTTGCTGTGAGAAGCTCTGATGATGGCCAGTACCATGTACATACCATTCTCAC-TTGGGA-CTGTCTTGTGCTTGCAAGCAGCAATTACTCAATGATTACTTTTCTGCAAAGTTTGT-GATATCAAATCCATTTCTCTCTGATGGATAGATTGAAGGAGGAAGCTAAGCTATGT-TTTCATGGTCATCAGTCCCAGGGA---GATG----GAGGAATAGCGTGTGAGAGTTCCAGCTCCATGTTCTTTGTTAAATAGTCAGAAACAACTCCCATTCCCTAAAGAGTGGAAAGAGAAATAGCAAACATTTAGTGAAAGGATCCATGTTATTCCTTCAAAATGCTC---------------TAGATTCACTCC--ACAACT-CTTCCTGACTCTTGATGATGAAAATATTTGG---AGAGCCCAATCATTT-CAAAGTTTTGGAGAACACAGACATCT i canFam3.chr9 C 0 C 0 a score=6701064.000000 s hg38.chr17_JH159146v1_alt 107393 1763 + 278131 -AAAAAAA---------------------------------------------------------TATCTTTGGAAAGGTAAAGTATGTTAGTATAGATAAATCA--TAATTAAGACAGCAGAGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGTGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATATATGTTTCTTTCTGTATCCAAAGA---CATTTAGAA--GGGAAGGTTGTAGCTTTTCAC-CTTCAGGTGCCGGTGGCCAAAAACAACCCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCGGTAAACAAGGCCTGAGTAAACAAGAGAGAGACCTGCCCATCAATCACCTGGGTAGTCAAGCAATGTAGGCCATCTTCCTGGGTGCTTACAAATCAGTTCCCATCCCTCAGATAAATGCAAAACATCCTTCCAGAGAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGTTAGGGAAGGAGCAGAATAAAAGATATTCTACCTAGCAATGGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTGTTTCATAAATGTGGGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCGCAGGCACTGCAGTGCTCCTTTAAGCTGCAGGGGGATGAGGATG------TGCAAGCTGGGGCCGTGCTTTCTATGGCTCCGGACTTACAAGATGTCCAAGGGGAAGGCTCACATTTGGTGGCACGTGGGTAACAGGGACGCCTAAGGAAAAAA-----------------------------------------------AACACAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGATTGTGGCTAA---TTTTTTTAACACGTGTTGCTC-AAGACAAGTACATACTTCTAAATGCTTATTCATTTATTTTGTACTGTAGTTACTGGAAGAAAAAGAATCAGATTAAATCCATTGGAAATCAGCATCCTAGGTTTAGAAGTATTCGATTATGTAAGTTTCCATTA--GTCAATACCATCACAT-Tgtggaaagaatactgcactagcagtcaaaagactgaggcagagaccagctctgtcctttaccagctggtgacctcagctaagtcatttaa-cgcactcaacctttagtttttcatctgcagaatggatataatggaaactaaacccacaggatCAACAGTGATAAGGAACAAGTTGAGGGCATTATTATCCGAGGAATGGAAATTAACCAGATATTTTTCTCAT---TGAGGAGTTAGTCATACTAATAGTGGTGGCCTGAACCCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTGGCTGTCTATGCAT----AGTTTTTAGAGAACTGAAGTAAAAAGCAGTTCATAGTAAACACTCTTTTTATAA-A-CATAATCTTTCTTTGATGATTCGAGGTATTTTGGTATATGATCACAGCTCCTAAAGGTGAC-AGCATTGATGACCATTGTGCTCACATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTCGGGAAGTAGGTCTCCTTTGCAATTGTAACTAAGTCT----CTGGGGTTTTAGTTTGGACTGAGTTGCTT-----CAAAGAACTCAT----CCTCCATATATGTTTACTT----ATGGGTTGGTTAGCTTCTTATTGCTTACAAAA-ATT s panTro4.chr17 66227859 1763 - 82630442 -AAAAAAA---------------------------------------------------------TATCTTTGGAAAGGTAAAGTATGTTAGTATAGATAAATCA--TAATTAAGACAGCAGAGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGTGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTATCCAAAGA---CATTTAGAA--GGGAAGGTTGTAGCTTTTCAC-CTTCAGGTGCCAGTGGCCAAAAACAACCCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGACCTGCCCATCAATCACCTGCGTAGTCAAGCAATGTAGGCCATCTTCCTGGGTGCTTACAAATCAGTTCCCATCCCTCAGATAAATGCAAAACGTCCTTCCAGAGAAATGTAAT-----TTATTGTCATGTTAGCAGTGGTGAGTTAGGGAAGGAGCAGAATAAAAGATATTCTACCTAGCAATGGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTGTTTCATAAATGTGGGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCACAGGCACTGCGGTGCTCCTTTAAGCTGCAGGGGGATGAGGATG------TGCAAGCTGGGGCCGTGCTTTCTATGGCTCCGGACTTACAAGATGTCCAAGGGGAAGGCTCACATTTGGTGGCACGTGGGTAACAGGGACGCCTAAGGAAAAAA-----------------------------------------------AACACAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGATTGTGGCTAA---TTTTTTTAACACTTGTTGCTC-AAGACAAGTACATACTTCTAAATGCTTATTCATTTATTTTGTACTGTAGTTACTGGAAGAAAAAGAATCAGATCAAATCCATTGGAAATCAGCATCCTAGGTTTAGAAGTATTCGATTATGTAAGTTTCCATTA--GTCAATACCGTCACAT-Tgtggaaagaatactgcactagcagtcaaaagactgaggcagagaccagctctgtcctttaccagctggtgacctcagctaagtcatttaa-cgtactcaacctttagtttttcatctgcagaatggatataatggaaactaaacccacaggatCAACAGTGATAAGGAACAAGTTGAGGGCATTATTATCCGAGGAATGGAAATTAACCAGATATTTTTCTCAT---TGAGGAGTTAGTCATACTAATAGTGGTGGCCTGAACCCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTGGCTGTCTATGCAT----AGTTTTTAGAGAACTGAAGTAAAAAGCAGTTCATAGTAAACACTCTTTTTATAA-A-CATAATCTTTCTTTGATGATTCGAGGTATTTTGGTATATGATCACGGCTCCTAAAGGTGAC-AGCATTGATGACCATTGTGCTCATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTCGGGAAGTAGGTCTCCTTTGCAATTGTAACTAAGTCT----CTGGGGTTTTAGTTTCGACTGAGTTGCTT-----CAAAGAACTCAT----CCTCCATATATGTTTACTT----ATGGGTTGGTTAGCTTCTTATTGCTTACaaaa-att i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24760085 1761 - 73212453 -AAAAAAA----------------------------------------------------------ATCTTTGGAAAGGTAAAGTATGTTAGTATAGATAAATCA--TAATTAAGACAGCAGAGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGTGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATATTTCTTTCTGTATCCAAAGA---AATTTAGAA--GGGAAGGTTGTAGCTTTTCAC-CTTCAGGTGCCAGTGGCCAAAAACAACCCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGACCTGCCCATCAATCACCTGTGTAGTCAAGCAATGTAGGCTATCTTCCTGGGTGCTTACAAATCAGTTCCCATCCCTCAGATAAATGCAAAATGTCCTTCCAGAGAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGTTAGGGAAGGAGCAGAATAGAAGATATTCTACCTAGCAATGGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAGCCTCTCTGGCAGGAGCATGTATTGGCCTCTGTTTCATAAATGTGTGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAGGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCACAGGCACTGCAGTGCTCCTTTAAGCTGCAGGGGGATGAGGATG------TGCAAGCTGGGGCCTTGCTTTCTATGGCTCCGGACTTACAAGATGCCCAAGGGGAAGGCTCACATTTGGTGGCACACGGGTAACAGGGACACCTAAGG-AAAAA-----------------------------------------------AACACAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGGTCGTGGCTAA---TTTTTTTAACACTTGTTGCTC-AAGACAAGTACATACTTCCAAATGCTTATTCATTCATTTCGTACTGTAGTTGTTGGGAGAAAAAGAATCAGATCAAATCCATTGGAAATCAGCACCCTAGGTTTAGAAGTATTCGATTATGTAAGTTTCCATTA--GTCAATACCGTCACAT-Tgtggaaagaatactgcactagcagtcaaaagactgaggcagagaccagctctgtcctttaccagctggtgacctcagctaaatcatttaa-tgctctcaagctttagtttttcatctgcagaatggatataatggaaactaaacccacaggatCAACAGTGATAAAGAACAAGTTGAGGGCATTATTATCCGAGGAATGGAAATTAACCAGATATTTTTCTCAT---TGAGGAGTTAGTCATAGTAATAGTGGTCGCCTGAACCCCAGCTGTGAAAGAGTCTTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTGGCTGTCTATGCAT----AGTTTTTAGAGAACTGAAGTAAAAAGCAGTTCATAGTAAACACTCTTTTTATAA-A-CATAATCTTTCTTTGATGATTCGAGGTATTTTGGTATATGATCACGGCTCCTAAAGGTGAC-AGCATTGACGACCATTGTGCTCATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTAACTGATTATTTTCTGGAAGTAGGTCTCCTTTGCAATTGTAACTAAGTCT----CTGGGGTTTTAGTTTGGACTGAGTTACTT-----CAAAGAACTCAT----CCTCCGGATACGTTTACTT----ATGGATTGGTTAGCTTCTTATTGCTTACaaaa-att i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47983092 1760 - 81552678 -AAAAAAA---------------------------------------------------------TATCTTTGGAAAGGTAAAGTATGTTAGTATAGATAAATCA--TAATTAAGACAGCAGAGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGGGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTGTCCAAAGA---AATTTAGAA--GGGAAGGTTGTAGCTTTTCAC-CTTCAGGTGCCAGTGGCCAAAAACAACCCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGACCTGCCCATCAGTCACCTGTATAGTCAAGCAATGCAGGCCATCTTCCTGGGTGCTTATAAATCAGTTCCCATCCCTCAGATAAATGCAAAATGTCCTTCCAGAGAAACGTAAT-----TTATTATCATGTTAGCAGTGGTGAGTTAGGGAAGGAGCAGAGTAAAAGATATTCTACCTAGCAATGGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTGTTTCATAAATGTGGGTCATTTTCATCGCCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGACGAAATGACTTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCACAGGCATTGCAGTGCTCCTTTAAGCCACAGTGGGCTGAGGATG------TGCAAGCTGGGGCCGTGCTTTCCATGGCTCCGGACTTACAAGATGTCCAAGGGGAAGGCTCACATTTGGTGGCACACGGGTAACAGGGACGCCTAAGG-AAAAA-----------------------------------------------AACAGAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGGTCGTGGCTAA---ATTTTTAAACACTTGTTGCTC-AAGACAAGTACATACTTCCAAATGCTTATTCATTCATTTCGTACTGTAGTTAGTGGAAGAAAAAGAATCAGATCAAATCCATTGGAAATCAGCATCCTAGGTTTAGAAGTATTCGATTATGTAAGTTTCCATTA--GTCAATACCatcacat-tgtggaaagaatactgcactagcagtcaaaagactggggcagagaccggctctgtcctttaccagctggtgacctcagctaagtcatttaa-cgctctcaagctttagtttttcatctgcagaatggatataatggaaactaaacccataggAGCAACAGTGATAAGGAACAAGTTGAGGGCATTATTATCCAAGGAATGGAAATTAACCAGATATTTTTCTCAC---TGAGGAGTTAGTCATACTAATAGTGGTGGCCTGAACCCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTGGCTGTCTATGCAA----AGTTTTTAGAGAACTGAAGTAAAAAGCAGTACATAGTAAACA--CTTTCTATAA-A-CATAATCTTTCTTTGATGATTCGAGGTATTTTGGTATATGATCACGGCTCTTAAAGGTGAC-AGCATTGATGACCATTGTGCTTATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTTGGGAAGTAAGTCTCCTTTGCAATTGTAACTAAGTCT----CTGGGGTTTTAGTTTGGACTGAGTTACTT-----CAAAGAACTCAT----CCTCTGGATACGTTTACTT----ATGGGTTGGTTAGCTTGTTATTGCTTACAAAA-ATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53087713 1759 + 80904711 -AAAAACT----------------------------------------------------------ATCTTTGGAAAGGTCAAGTATGTTAGTGTAGATAAATCA--TAATTAAGACAGCAGGGTTTAATAGGATCTATACTCGTGACTATCT-ACACAAGGGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTATCCAAAGA---AATTTAGAA--GGGAAGGTTGTAACTTTTCAC-CTTCAGGTGCCAGTGGCCAAAAACAACTCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGGCCTGCCCATCAATCACCTGTGAAGTCAAGCAATGTAGGCCATCTTTCTGGGTGCTTACAAATCAGTTCCCAGCCCTCAGATAAATGCAAAATGTCCTTCCAAAGAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGCTAGGGAAGGAGCAGAATACAAGATATTCTACTTAGCAATGGGGACCCGCTATAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTCTTTCATAAATGTGGGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCATAGGCACTGCAGTGCTCCTTTAAGCCACAGGGGGCTGAGGATG------TGCAAGCTGGGGCCGTGCATTCCATGGCTCCGGACTTATAAGATGTCCAGGGGGAAGGCTCACATTTGGTGGTACACAGGTAACAGGGACGCCTAAAG--AAAA-----------------------------------------------AACAGAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGGTCGTGGCTAA--TTTTTTTTAACACTTGTTGCTC-AAGACAAGCACATACTTCCAAATGCTTATTCATTCATTTTGTACTGTAGTTGGTGGAAGAAAAAGAATCAGATCAAATCCATTGGAAATCAGCATCCTGGGTTTAGAAGTATTCGATTATGTAAGTTTCTGTTA--GTCAATACCATCGCAT-Tgtagaaagaataccgcactagcagtc-aaagactggggcagacaacagctctgtcctttaccagctggtgacctcagctaagtcatttaa-ctctctcaagctttagttgttcatctgcagaatggatataatggaaactaaacctacaggatCAACAGTGATAAGGAACAAGTTGAGGGGATTATTATCTGAGGAATGGAAGTTAACCAGATATTTTTCTCAT---TGCGGAGTTAGTCATACTAATAGTGGTGGCCT-AACTCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAATG--CCTTCTAGCCGTctatacat----agtttttagagaattggagtaaaaagcagttcatagtaaacactcttttgataa-a-cataatctttctttgatgattcaaggtattttggtatatgatcacggctcctaaaggtgac-agcattgatgaccattgtgctcatataatgtggt--------catgccaattaaaagaATGCTGTGA--AGAGTTCACTGATTATTTTGGGGAAGTAGGTCTCCTTTACAATTGTACCTAAGTCT----CTCAGGTGTTAGTTTGGACTGAGTTACTT-----CAAAGAACTCAT----CCTCCAGGTATGTTTACTT----ATGGGTTGGTTAGatttttattgtttacaaaa-att i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52610582 1759 + 80997621 -AAAAACT----------------------------------------------------------ATCTTTGGAAAGGTCAAGTATGTTAGTGTAGATAAATCA--TAATTAAGACAGCAGGGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGGGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTATCCAAAGA---AATTTAGAA--GGGAAGGTTGTAACTTTTCAC-CTTCAGGTGCCAGTGGCCAAAAACAACTCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGGCCTGCCCATCAATCACCTGTGAAGTCAAGCAATGTAGGCCATCTTCCTGGGTGCTTACAAATCAGTTCCCAGCCCTCAGATAAATGCAAAATGTCCTTCCAAAGAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGCTAGGGAAGGAGCACAATAAAAGATATTCTACTTAGCAATGGGGACCCGCTATAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTCTTTCATAAATGTGGGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCATAGGCACTGCAGTGCTCCTTTAAGCCACAGGGGGCTGAGGATG------TGCAAGCTGGGGCCGTGCATTCCATGGCTCCGGACTTATAAGATGTCCAGGGGGAAGGCTCACATTTGGTGGTACACGGGTAACAGGGACGCCTAAAG--AAAA-----------------------------------------------AACAGAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGGTCGTGGCTAA--TTTTTTTTAACACTTGTTGCTC-AAGACAAGTACATACTTCCAAATGCTTATTCATTCATTTTGTACTGTAGTTGGTGGAAGAAAAAGAATCGGATCAAATCCATTGGAAATCAGCATCCTGGGTTTAGAAGTATTCGATTATGTAAGTTTCTGTTA--GTCAATACCatcgcat-tgtagaaagaataccgcactagcagtc-aaagactggggcagacaacagctctgtcctttaccagctggtgacctcagctaagtcatttaa-ctctctcaagctttagttgttcatctgcagaatggatataatggaaacgaaacctacAGGATCAACAGTGATAAGGAACAAGTTGAGGGGATTATTATCTGAGGAATGGAAGTTAACCAGATATTTTTCTCAT---TGCGGAGTTAGTCATACTAATAGTGGTGGCCT-AACTCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAATG--CCTTCTAGCCATCTATACAT----AGTTTTTAGAGAATTGGAGTAAAAAGCAGTTCATAGTAAACACTCTTTTGATAA-A-CATAATCTTTCTTTGATGATTCAAGGTATTTTGGTATATGATCACGGCTCCTAAAGGTGAC-GGCATTGATGACCATTGTGCTCATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTGGGGAAGTAGGTCTCCTTTACAATTGTACCTAAGTCT----CTCAGGTGTTAGTTTGGACTGAGTTACTT-----CAAAGAACTCAT----CCTCCAGGTATGTTTACTT----ATGGGTTGGTTAGCTTTTTATTGTTTACAAAA-ATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47655430 1759 + 74645514 -aaaaaat----------------------------------------------------------atctttggaaAGGTCAAGTATGTTAGTGTAGATAAATCA--TAATTAAGACAGCAGGGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGGGAATTAAATATTAAAGATCTTTTCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTATCCAAAGA---AGTTTAGAA--GGGAAGGTTGTAACTTTTCAC-CTTCAGGTGCCGGTGGCCAAAAACAACTCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGGCCTGCCCATCAATCACCTGTGAAGTCAAGCAATGTAGGCTGTCTTCCTGGGTGCTTACAAATCAGTTCCCAGCCCTCAGATAAATACAAAATGTCCTTCCAgagaaatgtaat-----ttattatcATGTTAGCAGTGGTGAGCTAGGGAAGGAGCAGAATAAAAGATATTCTACTTAGCAATGGGGACCCGCTATAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTCTTTCATAAATGTGGGTCATTTTCATCACCTTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCACAGGCACTGCAGTGCTCCTTTAAGCCACAGGGGGCTGAGGATG------TGCAAGCTGGGGCCGTGCATTCCATGGCTCCGGACTTATAAGATGTCCAGGGGGAAGGCTCACATTTGGTGGTACACGGGTAACAGGGACGcctaaag--aaaa-----------------------------------------------aacagaattttagctGTGATTGAGGGAAGGTGATGATGGTCATGGAGAAAAATGgtcgtggctaa--ttttttttaacacttgTTGCTC-AAGACAAGTACATACTTCCAaatgcttattcattcattttgtacTGTAGTTGgtggaagaaaaagaatcagaTCAAATCCATTGGAAATCAGCATCCTGGGTTTAGAAGTATTCGATTATGTAAGTTTCTGTTA--GTCAATACCATCGCAT-TGTAGAAAGAATACCGCACTAGCAGTC-AAAGACTGGGGCAGAGAACGGCTCTGTCCTTTACCAGCTGGTGACCTCAGCTAAGTCATTTAA-CTCTCTCAAGCTTTAGTTGTTCATCTGCAGAATGGATATAATGGAAACTAAACCTACAGGATCAACAGTGATAAGGAACAAGTTGAGGGGATTATTATCTGAGGAATGGAAGTTAACCAGATATTTTTCTCAT---TGCGGAGTTAGTCATACTAATAGTGGTGGCCT-AACTCCAGCTATGAAAGAGTCGTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTAGCCGTCTATACAT----AGTTTTTAGAGAATTGGAGTAAAAAGCAGTTCATAGTAAACACTCTTTTGATAA-A-CATAATCTTTCTTTGATGATTCAAGGTATTTTGGTATATGATCACGGCTCCTAAAGGTGAC-GGCATTGATGACCATTGTGCTCATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTGGGGAAGTAGGTCTCCTTTACAATTGTACCTAAGTCT----CTTAGGTGTTAGTCTGGACTGAGTTACTT-----CAAATAACTCAT----CCTCCAGGTATGTTTACTT----ATGGGTTGGTTAGCtttttattgtttacaaaa-att i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9923254 1756 - 75148670 -AAAAAAT----------------------------------------------------------ATCTTTGGAAAGGTCAAGTATGTTAGTGTAGATAAATCA--TAATTAAGACAGCAGGGTTTAATAGGATCCATACTCGTGACTATCT-ACACAAGGGAATTAAATATTAAAGATCTTTCCCCCTATTTATACTGTTCCCATGTATGTTTCTTTCTGTATCCAAAGA---AATTTAGAA--GGGAAGGTTGTAACTTTTCAC-CTTCAGGTGCCGGTGGCCAAAAACAACTCTA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTCAGTAAACAAGGCCTGAGTAAACAAGAGAGAGGCCTGCCCATCAATCACCTGTAAAGTCAAGCAATGTAGGCCGTCTTCCTGGGTGCTTACAAATCAGTTCCCAGCCCTCAGATAAATGCAAAATGTCCTTCCAGAGAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGCTAGGGAAGGAGCAGAATAAAAGATATTCTACCTAGCAATAGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACT-GGGAGTTTTCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTCTTTCATAAATGTGGGTCATTTTCATCA--TTGGGATGTTAGACTTTGGCAGGTCTGATGATGAAACAAGGCTGTACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTGATGGTGCAAATTTTAACCAGTATCCGGGACAGGGGTCCACAGGCACTGCAGTGCTCCTTTAAGCCACAGGGGGCTGAGGATG------TGCAAACTGGGGCCGTGCATTCCATGGCTCCGGACTTATAAGATGTCCAAGGGGAAGGCTCACATTTGGTGGCACACGGGTAACAGGGACGCCTAAAG--AAAA-----------------------------------------------AACAGAATTTTAGCTGTGATTGAGGGAAGGCGATGATGGTCATGGAGAAAAATGGTCGTGGCTAA-TTTTTTTTTAACACTTGTTGCTC-AAGACAAGTACATACTTCCAAATGCTTATTCATTCATTTTGTACTGTAGTTGGTGGAAGAAAAAGACTCAGATCAAATCCATTGGAAATCAGCAT-CTGGGTTTAGAAGTATTTGATTATGTAAGTTTCCGTTA--GTCAATACCATCGCAT-Tgtagaaagaataccgcactagcagtc-aaagactggggcagagaacggctctgtcctttaccagctggtgacctcagctaagtcatttaa-ctctctcaagctttagttgttcatctgtagaatggatataatGGAAACTAAACCTACAGGATCAACAGTGATAAGGAACAAGTTGAGGGGATTATTATCTGAGGAATGGAAGTTAACCAGATATTTTTCTCAT---TGCGGAGTTAGTCATACTAATAGTGGTGGCCT-AACTCCAGCTATGAAAGAGTCCTCACTGTGTCATCAGGAAGCTTCAAAGTG--CCTTCTAGCTGTCTATACAT----AGCTTTTAGAGAATTGGAGTAAAAAGCAGTTCATAGTAAACACTCTTTTGATAA-G-CATAATCTTTCTTTGATGATTCAAGGTATTTTGGTATATGATCACGGCTCCTAAAGGTGAC-GGCATTGATGACCATTGTGCTCATATAATGTGGT--------CATGCCAATTAAAAGAATGCTGTGA--AGAGTTCACTGATTATTTTGGGGAAGTAGGTCTCCTTTGCAATTGTACCTAAGTCT----CTCAGGTGTTAGTTTGGACTGAGTTACTT-----CAAAGAACTCAT----CCTCCAGGTACGTTTACTT----ATGGGTTGGTTAGCTTTTTATTGTTTACAAAG-ATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112795705 1739 + 159171411 -AAAAACA----------------------------------------------------------ATCTACGGAAAGGTAAAGTATGTTAGTATAGATAAATCA--TAATTAAGACAGTGGAGTTTAATAGGATCCATACTTGTAAATATCT-ACTCAAGGGAACTAAATAGT-AAGATTTTCCCCCCTATTTATACTGTTCCCATGTACATTTCTTTCTGTATCCAAAGA---AATTTAGAA--GGTATGGTTGTAGCTTTTCAC-CTTCATGTGCCAGTGGCCAAAAACAACCCCA-AACTTGTCTGACTGGCTCTAAGGAGGAATGTAAGTAAACAAGGCCTGAGTAAACAAGAGAGAGACCTGCCCATCAATCACCTGTGCAGTCAAGCAATGTAGGCCATCTTCCTGGGCGCTTACAAATCAGTTCCCATCCCTCAGATAAATGCAAAATGTCCTTCCAGAAAAATGTAAT-----TTATTATCATGTTAGCAGTGGTGAGTTAGGGAAGGAGCAGAATAAAAGGCATTCTACCTGGCAATGGGGACCCGCTGTAGTAGTAAGAAACTAAGTACCTT-AAGGGACTGGGGAGTTTCCTTAAACCTCTCTGGCAGGAGCATGTATTGGCCTCTCTTTCATTAAAGTGGGTCATTTTCATCACCTTGGGCTGTTAGACTTTGGCAGGTCTGATGATGAAGCAAGGCTGCACATGCTCATAAGAAGAAATGACCTTCCCATCCTTAATCTCCTTGGTAATGGTGCAGATTTTAACCAGTATCCTGGACAGGGGTCCACAGGCACTGCAGGGCCCCTGTAAGCCACAGGAGGCTGAGGATG------TGCAAGCTGGGGCCGTGCATTCCATGGCTCTGGACTTACAAGATGTCCAAGGGGAAGGCTCACACTTAGTGGCACATGGATAACAAGGAAGCCTAAGGAAAAAA-----------------------------------------------AACAGACTTTTAGCTGTGATAGAAGGAAGGCAATGATGGTCATGGAGAAAAATGGTTGTGGCTAATTTTTTTTTAAACACTTGTTGCTC-AAGAGAAGTACGTACTTCCGAATGTTTATTCATTCATGTCATTCTGTAGTTAGTGGAAGGAAAAGAATCAGATCAAATCGATTGGAAATCAGCATCCTAGGTTCAGAAGTATTCGATTACGTAAGTTTCCATTG--GTCAATACCATtgcac-tgtggaaagaataccgcactcgcagtg-aaaggctggggcagagactagctctgtcctttaccagctggtgacc-cagctaagtcatttaa---ctctcaagctttagcttttcatctgcagaatggagataatGGAAACTAAACCCACGGGATCAATAGTGATAAGGAACAAGTTGAGGGAA-TATTATCTGAGGAATGGAAATTGATCAGATATTTTTCTCAC---TGGGGACTTAGTCATACTAATAGTGGTGGCCTAAACCCCAGCTACAAAAGAGTCCTCACTGTGTCATCGGGAAGCTTCAAAGTG--GCTTCCAGCTGTCTATATGT----AGTTTTTAGAGAATTGGAGTAAAAAGCAGTTCATAGTAAACGCTCTTTTTATAA-A-CATAATCTTTCTTTGATGATTTGAGGCACTTTGGTATATGATCACAGCTCCCTAAGGTGAC-AGCATTGATTACCGTTGTGCTCATGTAATGTGGT--------TGTGCCAATTAGAAGAATGCTATGA--AGAGTTCGCTGATTACTTTGGGGAAGCAGGTCTTCTTTGCAATTGCAACTAAGTCT----CTGGGGTGTTAGTTTGGGCTGAGTTACTT-----CAAGGAACGCAT----CCTCCGGGTATAT------------------------TTCTTATGGTTTACAAAA-ATT i calJac3.chr5 C 0 I 294 s mm10.chr11 99513995 1790 + 122082543 -aaAAGATGAAAATCAGAATGGGAGAAGAATCTAGAGCATGCAGAAAGCCCCCCCCCCCAAGTTCTGTTTTGGTAACAGGAAAATATACTAGTACAGA-GAATCAATTGGTTGAGGTGGCGAAGGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGG----TCTTCCTTATTTATTCGGTTCCTGTGTCGGCTTCATTCTACATCCAAAGAAGGAATTCAGAA--GGCAAGGCTGTGGCTTTTTACGTTTCACGTGCCAACTGCCAAAACCAACCCCAGAACTTGTCTGACTGGCTCTACAGAGGTACAGAGATAAACAAGGCTTGAATAAACAAAAGGAAAACCTGCCTGTCCGACACCTGACTAGGCAAGCAATGTAGGC-------------ACTAGCTAACCAGTTCCCATCCCTGCGAC-AATACGTAATGTCCTTCCAGAGAAATGTGAC-----TTATTATCATGTTGGTAGCAGTGACTTAGGGAAGGAGAAGAACAC------------------ATGGGAGCCCACTGTAGTAGTAAGAAACTAGGTACCTT-AAGGGACTGGGGG--TTTCTTAAGCCTTTCTGGCAGGAGCATGCACTGGCCTCTCTTTCATGAATGGAGGTCATTCTTATCACCTTGAGATGCTAGACTTTGGTAGCTCTGGTGATGTAGCAAGGCTGCACATGCTCGTAAGAAGAAATGACCTTCCCATCCTTGATCTCCTTGGTGATGGTGCATATCTTAACAAGTATCCGGGATGGGGGTCCAGAGGCACGGCAGGGCTTGTGAATCCCAGGGAGTGATGAAGATG------TATAAACTGGGGTAAAACACTCCATAGCTCTGGCCTGGCAGGAT------------GGCTCCCACTTAGTGGCACATGGGTTACAGGGAAGCCTAAGT--AGAaacaatgagaacagcaacaacaatagcagcagcaataacaagagcagcaacaGAATTTTA---GTGATCGAGGAAGGGCAATGATCGCTACGAAG-AAGATGGGAGTGGCTAA----GTCTTCAATACTTGTCACTTGAACACAATC----ACCACTAAATGCTCATTCATTCATTTTGTGCTGTAGTTAGCAGAAGATTGAGAATTAGAGCAGATCCATTGGAAGATAGCTTCCTGGCTTGAGAAGT-----ATTACCTGGGT-----TCA--ACTGCTATTCTAGCTC-CAtgggaaacacactgcaccagcaatc-aaagacaggggcagggcccagttctcttgtttgctagtgggtgaccttggctgaagcagtcaagccctcctgaactttagtttTGTGTGGTCAGAATGGACACAATGGGGACTTAACTC------CCATAAAGGGTATGCAGAGAGTGGAGGGGCTTTCTATCTGGCGAATGGAGATGAGTTAGGTCATTTTCTGGTGTGGGGGGAGTTTGTTATACAATTAGAGGTGGTCTGAACGCTACTTACAGAGGAATCTTTAGCATATCACCAGGAAGTGTCAAAGTGCCCCTTGTGAATGTCTGTATGTTATATATATATATATAGTTGGAGTAGCCAATAGTTTGCACTAAACATTCTTTTTACAATA-CATGATTTTTACTGGGTAACTGGTGGT-CTTTGCTATGCTAT---AGTTCTTTAAAGGAAT-AGTGCC-----CCTTAATACTTGTGCTGTGT-----------------ACACAAGAGAACACAGCGAGCGAAGGTGACTGATTACTGTGGCACAGTTGGTGTCCTTTGCAGTTTCAATGAGGTTT----TTGTGGGGTTAGTTTGGCCTGAGTTGCTT-----CAACAAACTCAT----------GATTAGTTGAATTCTGGATGGGTTGGCTGTCTTATTATCACTAAAAAAC-ATA i mm10.chr11 I 142 C 0 s canFam3.chr9 39344113 1749 - 61074082 TCAGAAAT----------------------------------------------------------ATCTTGGGGAACATGAAGTATGTCAGTATGGATAA--CA---------GACAGCGGAGTTCAACAGGAGACAGACTCATGACTTTTC-----AAGGAAACTGAACATTAATGATCTTTTCCCCTATTCATGCTATTCGAATAGAGGCTTCTTTCCATGGCCAAGGAAGGATTTTAGAAGGGGGAAGGTTGCAGCTTTTGAC--ATCATGTACCA-TGGCGAAAAGCAATCCTAGAACTTGTCTGACTGGCTCTAGTGAGGAATATAAGTACACAAGACCTGAGTAAACAAAAGAGAAACCG---CAT--ATCACTTGTGAAGTCAAGTAATGTAGGGAACCTTCCTGGGCACCTACAAATCACTGCCTGTCTCTCAGAGAAATGGGTAATGTGCTCCTAGAGAAATTTCATCCATCTTATTATCACGTTGACAGCTGCAACTTAGGGAGGGATCAGAATACAAGGTATTCTGTTTAGCAGTGCACACCCACTGTGGTA-TAAGAAACTAAGTACCTTAAAGGGGCTGGGGA---CTTTTAAGCCTTTCTGGTAGGAACAAGTATTGACCTCTCTTTCATGAACGAGGGATATTTTCTTCACCTTGGGATGTCAAACTCTGGCAATTCTGATAAGGAAGCAAGGCTGCACATGCTCATGGGAAGAAATGATTTTGCCATCCTGAATCTCCTGAGTGATGGTGCAGATTTTAACCAGTATTCGGGGAAGGACTCTGTAGGCACAGCAAGGCTCCTGTGTCCTGCGGGAATCTGAGGATGGTGTATTGTAAACCAGAGCTGTGCATTCCATGGCGCTGGCCTTACTTGA------------AGGCTCACATTTGGTGGCACACGGGTTACAGAGAAGCCTAGAA--AAAA-----------------------------------------------ACCAGAATTTTACCTGTGACTGAGGGAAGGTAATG-TGGTGATAGAAAACAATAGCGGTGGGCAG---TTTTT----CATGCATCACTT-GAAACAAGT----ACTCCCAAATGCTTATTCATTAATTTTATTCTATCATTAGTGGAAGAAAAAGAATGAGACCAGATCCATGGGAAAGCAGCAAGTTAGGTTTAGAAGCGTTAGGTTATGTAAGCTGCTATTATGGAGAATGCTACCACACAcggtggaaggacgtaatgccaggagtt-aaagaccagggtgtag--tagctttgtccttcaccagctggtgacctaagataaatcagtgag-tcctcctgagctttagttcttcacctgcacaataagtatagtgagaactAAACGTACATGGTCAACAGTGATAAGGGACAAGTTAAGGGGCTTATTATCTGAGGAAAGCAAGTTAATCAGATATTTTTCTTAT---CAGAGA----GCCACAATAGTACTGATGGCTTGAACCTCATCTATGGAAGAGTCCTCGAGGTTTTTTCAGGAAGCTTCAAAGTG--CCTTCTGGGCGTATTTAAAT---GAAACTTTACAGAATTGGAGTTGGAAGCAGTTAACAGAA----CTCTTTTTAGAA-AGCATCATCTTTCTTTGATGATTCAAGCAACTTTGGTATATTGT---AGCTCCTCAAAGTGACTAGCAGGGGTGAATCTTGTGCTGGTATAATGTGGCAGTTAAAATGTGCCAGTTAAAAGAATCCTATGAACAGAGTTCACTGCTTATTTTGGAGAAGAAGGTCTCTGTAACAACTGTAACTAAGTCTGCACCTAGGGTGTTAGTTTGGACTGAGTTGCTTTCCTCTAAACAACTTGTGGTCTCTCTAGGTCAGTTC-CTT----ATGATTTGGTTGGCTTCTTATCATTGAAAAAACACT i canFam3.chr9 C 0 C 0 a score=620805.000000 s hg38.chr17_JH159146v1_alt 109156 165 + 278131 ATAACTTTTATTTTTTAA---AAAAGATGCTAAAACATACATGTGTACATGCTTCTGTTGGCCTCAAGGACTAGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAGACGTTCA s panTro4.chr17 66229622 165 - 82630442 ataacttttattttttaa---aaaaGATGCTAAAACATACATGTGTACATGCTTCTGTTGGCCTCAAGGACTAGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAGACGTTCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24761846 165 - 73212453 ataacttttattttttaa---aaaaGATGCTAAAACATACATGTATACATGCTTCTGTTGGCCTCAAGGACTAGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAGACGTTCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47984852 165 - 81552678 ATAACTTTTATTTTTTAA---AAAAGTTGCTAAAACATACATGTGTACATGCTTCTGTTGGCCTCAAGGACTAGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTGGTTTTGTACAAGCTCATGAAAATCAGACGTTCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53089472 165 + 80904711 ataacttttattttttaa---aaaaGATGCTAAAACATACATGTGTACGTGCCTCTGTTGGCCTCAAGGACTGGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----GTGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAAATGTTCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52612341 165 + 80997621 ATAACTTTTATTTTTTAA---AAAAGATGCTAAAACATACATGTGTACGTGCCTCTGTTGGCCTCAAGGACTGGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAAATGTTCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47657189 165 + 74645514 ataacttttattttttaa---aaaaggtgctaaaacatacatgtgtatgtgccTCTGTTGGCCTCAAGGACTGGTGGCTAGATAGGGTTAGGGGTTTCAGCCTAAGCAGA----ATGTTCCTCCAAAGGAGCCTGGGTTGTTTTGTACAAGCTCATGAAAATCAAATGTTCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9925010 165 - 75148670 ATAACTTTTATTTTTTAA---AAAAGATGCTAAAACATACATGTGTATGTGCTTCTGTTGGCCTCAAGGACTGGTGGCTAGATAGGGTTAGGGGTTTCAGCCTGAGCAGA----ATGTTCCTTCAAAGGAGGCTGGGTTGTTTTGTACAAGCTCATGAAAATCAAACGTTCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112797738 165 + 159171411 acaacTTTTATTTTTTTA---AAAAGATGTTAAAACACACATGTGTACCCACTGCTGTTGGCATCAAGAACTAGTGACTAGATAGGGTTAGGGGTTTCAGCCTGAGAAGA----ATGGGCCTCCAAAGGTGCCTGGGTTGTTTTGTACGAGCTCATGAAAAGCAGATGTTCA i calJac3.chr5 I 294 C 0 s mm10.chr11 99515785 168 + 122082543 CAAAGTCTTAATTTGTAAATGAAAGGATGTGGAAAC--CCTTGTCAGCACGCTGCTGTTGGGGTGAAGG-CTCACATCTAGACAGGGTTGGGGGTTTCAGCCTGAGCACGCACTGCGTGCCTCTACTGGA-CCAGGGTTGTCCTTTCTTACATCAGCAAAGTCCCATGTTCA i mm10.chr11 C 0 I 237 s canFam3.chr9 39345862 158 - 61074082 ATAATTTCTTTTTCTAAA---AAATGGTGTTAAAACACACATATCTACATGCTGCTATTGGCATCAAGAACAAGTGGCTGGATAGGTGTGGGCATTTCAGCCTGAGCAGA----ATGTTCCTCCAAAGGGAACAGGGTCAGTCTATTGGATCTCATAAAA-------GTGCA i canFam3.chr9 C 0 C 0 a score=303429.000000 s hg38.chr17_JH159146v1_alt 109321 96 + 278131 TCTCAGT-GGGGAAACATCTGTAATGGTC--ACCAGGAATATTC--ATCTATGGGGAAATAATTTTTTCTCTAGTAATTTTTAAAACTCTAAGAAGGTAAG s panTro4.chr17 66229787 96 - 82630442 TCTCAGT-GAGGAAACATCTGTAATGGTC--ACCAGGAATATTC--ATCTATGGGGAAATCATTTTTTCTCTAGTAATTTTTAAAACTCTAAGAAGGTAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24762011 96 - 73212453 TCTCAGT-GGGGAAACATCTGTAATGGTC--ACCAGGAATATTC--ATCTATGGGGAAATCATTTTTTCTCTAGTAATTTTTAAAACTCTAAGAAGGTAAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47985017 97 - 81552678 TCTCAGTGGGGGAAATATCTGTAATGGTG--ACCAGGAATATTC--ATCTATGGGGAAATCATTTTTTCTCTAGTAATTTTTAAAACTTTAAGAAGGTAAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53089637 96 + 80904711 TCTCAGT-GGGGAAACATCTGGAATGGTC--ACCGGGAATATTC--ATCTAAGGGGAAATCATTTTTTCTCTAGTAATTTTTAAAACTCGAAGAAGGTAAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52612506 96 + 80997621 TCTCAGT-GGGGAAACATCTGGAATGGTC--ACCGGGAATATTC--ATCTAAGGGGGAATCATTTTTTCTCTAGTAATTTTTAAAACTCGAAGAAGGTAAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47657354 96 + 74645514 TCTCAGT-GGGGAAACATCTGGAATGGTC--ACCGGGAATATTC--ATCTAAGGGGAAATCATTTTTtctctagtaatttttaaaactcgaAGAAGGTAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9925175 98 - 75148670 TCTCAGT-GGGGAAACATCTGGAATGATCAGATTGGGAATATTC--ATCTATGGGGAAATCATTTTTTCTCTAGTAATTTTTAAAACTCGAAGAAGGTAAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112797903 96 + 159171411 TCTCAGT-GGGGAAACATCTATAATGGTC--ACTAGGACTATTC--ATCTATGGGAAAACCATTTTCTCTCTAGTCATTTTTAAAACTCTAAGAAGCTAAG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39346020 84 - 61074082 TCTCAGT-GGGGGAGAATCTATAA--GTT--GCCAGGAATATTTGAATATTTGGGGAAACCATTTTTCGTCTTCTACTTAAAAAAACTC------------ i canFam3.chr9 C 0 C 0 e mm10.chr11 99515953 237 + 122082543 I a score=2180088.000000 s hg38.chr17_JH159146v1_alt 109417 551 + 278131 CAACCTATAAGAAATTAACCTGGCCCATGGGCTCTTCAGAACAGCTCAGGTCAGCCAATGCCTCAAATTTGGATAAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAGGGTGTGTGGATGCCTCTGTCCAAGC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------ACCCCTGTTGCCAGTGGCAGTA--CATATATCTGCGTTCATTTA---------------------------CACTT-TTTTGTCATAGAAGTTGCTGTTATTTTACATACTTGCCATCCGAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACATTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCTTCCAGGTTATCAATCAGACTCTGGATCTGGGTCAGCAAGGCCGTGTAGCGAGCCTCTGTCTCCGTTAGGATGCACTCTTGGGAATCTCTCTACCATGGAGAAGGATAGTAGGATTTATAATGA---CTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT s panTro4.chr17 66229883 554 - 82630442 CAACCTATAAGAAATTAACCTGGCCCATGGGCTCTTCAGAACAGCTCAGGTCAGCCAATGCCTCAAATTTGGATAAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAGGGTGTGTGGATGCCTCTGTCCAAGC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------ACCCCTGTTGCCAGTGGCAGTA--CATATATCTGCGTTCATTTG---------------------------CACTT-TTTTGTCATAGAAGTTGCTGTTATTTTACGTACTTGCCATCCGAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGATTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCTTCCAGGTTATCAATCAGACTCTGGATCTGGGTCAGCAAGGCCGTGTAGCGAGCCTCTGTCTCCGTTAGGATGCGCTCTTGGGAATCTCTCTACCATGGAGAAGGATAGTAGGATTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24762107 549 - 73212453 CAACCTATAAGAAATTAACCTGGCCCATGGGCTCTTTAGAACAGCTCAGGTCAGCCAACACCTGAAATTTGGATGAGCTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAGGGTGTGTGGATGCCTCTGTCCAAGC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------ACCCCTATTGCCAGTGGCAGTA--CATATA--TGCGTTCATTTG---------------------------CACTT-CTTTGTCATAGAAGT---TGTTATTTTACGTACTTGCCATCCAAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCATATTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCCTCCAGGTTATCGATCAGACTCTGGATCTGGGTCAGCAAGGCCGTGTAGCGAGCCTCTGTCTCCGTTAGGATGCACTCTTGGGAATCTCTCTACCATGGAGAAGGATAGTAGGATTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47985114 552 - 81552678 CAACCTATAAGAAATTAACCTGGCCCATGGGCTCTTTAGAACAGCTCAGGTTAGCCAACTCCTCAAATTTGGATGAGGTTACAATTGCAAGTCTTCCTCATGGCACAACTTGAGAGGGTGTGTGGATGCCTCTGTCCAAGC-TCCCCGTCACTGGCAAGAAGGTC-AAACAAAGCACTTC------ACCTCTATTGCCAGTGGCAGTA--CATATA--TGCGTTCATTTG---------------------------CACTT-CTTTGTCATAGAAGTTGTTGTTATTTTACGTACTTGCCATCCAGGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGATGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCCTCCAGGTTATCGATCAGACTCTGGATCTGGGTCAGCAAGGCTGTGTAGCGAGCCTCTGTCTCCGTTAGGATGCACTCTTGGGAATCTCTCTACCATGGAGAAGGATAGTAGGATTTATAATGATGACTCCTTTAAGCCC------AGGTCACGTGTGACCTGTATCATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53089733 541 + 80904711 CAACCTGTAAGAAATTAACCTGGCGCATGGGTTCCTCAGAAC----------AGCCAACGCCTCAAATTTGGATGAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAGGGTGTGTGGATGCCTCTGTCCAAGC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------TCCCCTATTGCCAGTGGCAGTA--CATATA--TG-GTTCATTTG---------------------------CACTT-CTTTGTCATAGAAGTTGTTGTTATTTTACGTACTTGCCATCCAAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGAATCTCTGCCAGCTGAGCCTCCAGGTTATCGATCAGACTCTGGATCTGGGTCAGCAGGGCTGTGTAGCGAGCCTCCGTCTCCGTCAGGATGCACTCTTGGGAATCTCTCTAGCATGGAGAAGGATAGTAGGGTTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT i rheMac3.chr16 C 0 I 316 s macFas5.chr16 52612602 541 + 80997621 CAACCTATAAGAAATTAACCTGGCGCATGGGCTCCTCAGAAC----------AGCCAACGCCTCAAATTTGGATGAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGagggtgtgtggatgcctctgtccaagc-tccccatcactggcaagaaggtc-aaacaaagcacttg------tcccctattgccagtggcagta--CATATA--TG-GTTCATTTG---------------------------CACTT-CTTTGTCATAGAAGTTGTTGTTATTTTACGTACTTGCCATCCAAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGAATCTCTGCCAGCTGAGCCTCCAGGTTATCGATCAGACTCTGGATCTGGGTCAGCAGGGCTGTGTAGCGAGCCTCCGTCTCCGTCAGGATGCACTCTTGGGAATCTCTCTAGCATGGAGAAGGATAGTAGGGTTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT i macFas5.chr16 C 0 I 316 s papAnu2.chr16 47657450 541 + 74645514 CAACCTATAAGAAATTAACCTGGCACATGGGCTCCTCAGAAC----------AGCCAACGGCTCAAATTTGGATGAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAAGGTGTGTAGATGCCTCTGTCCAACC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------TCCCCTATTGCCAGTGGCAGTA--CATATA--TG-GTTCATTTG---------------------------CACTT-CTTTGTCATAGAAGTTGTTGTTATTTTACGTACTTGCCATCCAAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCTGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCCTCCAGGTTATCAATCAGACTCTGGATCTGGGTCAGCAGGGTTGTGTAGCGAGCCTCCGTCTCTGTCAGGATGCACTCTTGGGAATCTCTCTAGCATGGAGAAGGATAGTAGGGTTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGAcctgtatcattt i papAnu2.chr16 C 0 I 269 s chlSab2.chr16 9925273 541 - 75148670 CAACCTATAAGAAGTTAACCTGGCACATGGGCTCCTCAGAAC----------AGCCAACGCCTCAAATTTGGATGAGGTTACAATTGCAAGTCTTCCTCATGGCACAGCTTGAGAAGGTGTGTGGATGCTTCTGTCCAAGC-TCCCCATCACTGGCAAGAAGGTC-AAACAAAGCACTTG------TCCCCTATTGCCAGTGGCAGTA--CATATA--TG-GTTCATTTG---------------------------CACTT-CTCTGTCATAGAAGTTGTTGTTATTTTACGTACTTGCCATCCCAGCTCTCCAGAAGGCTGCGGTATGTGGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTACTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCCTCCAGGTTATCAATCAGACTCTGGATCTGGGTCAGCAGGGTTGTGTAGCGAGCCTCCGTCTCCGTCAGGATGCATTCTTGGGAATCTCTCTAGCATGGAGAAGGATAGTAGGGTTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTT i chlSab2.chr16 C 0 I 236 s calJac3.chr5 112797999 549 + 159171411 CAACCTGGAAGAAATTAACCTGGCACATGGGCTCTTTAAAACAGCTCAGCTTAGCCAACGCCTCAAATTTGGAAGAGGTTACAACTGTAAGTCTTTCCCATGGCACAGCTTGAGATGGTGTGTGGTTGCCTCTGTCCAAGC-TCCCCATCACTGGCCAGAAGGTC-AAACAAAGCATGTG------TCCCCCATTGCCAGTGGCAGTA--CGTGTA--TGCATTCATTTG---------------------------CACTT-CTTTGTCATAGAAGT---TGTTATTTTACATACTTGCCATCCAAGCTCTCCAGAAGGCTGCGGTATGTAGTAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGGATCTCGTATTCTTGGTTCTGTCTTTCCAGGGCACACCGGATCTCTGCCAGCTGAGCCTCCAGGTTATCAATCAGACTCTGGATCTGGGTCAGCAGGGCTGTGTAGCGAGCCTCTGTCTCCGTCAGGATGCACTCCTGGGAATCTCTCTACCATGGAGGAGGAAAGTAGGATTTATAATGATGACTCCTTTAAGCCC------AGGTCACCTGTGACCTGTATCATTA i calJac3.chr5 C 0 I 1 s mm10.chr11 99516190 567 + 122082543 CAACCTATGAGGAATTAATTTGGTATGC-ATCTCTTCAAACCGATTTAGTTCCACACACATCTCAAGTTAGGACTATGTTACAATTGAAGGTCTTT----------------AGAGAATATTTGATAATCTCCATCCAGATGTCCCCCTTATTGTCAAGAAAGTCGAAGCATAGTTCTTGAATGGATGCTCTATTTCCCgtgtgtgtg--tgtgtg--tgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtAACACACACAT-TTCTTTCATCTATGTTGCTTTAATTTTACATACCTGCCATCTAAGCTCTCAAGAAGGCTTCGGTATGTGGCTATCTCACACTCCAGCCGGGACTTGATGTCTAGCAGAACTTCATATTCCTGGCTCTGTCTTTGCAGGGCACTGCGGATATCTGCCACCTGAGCCTCCAGGTTGTGGATCAGACTCTGGATTTGGGCCAGCAGGGCTGTGTAGCGGGCCTCCGTCTCCGTCAGGATGCATTCCTGGGACTCTCTCTATGGAAGAGGAGGCATACAGACTCTA-----ATGACTCCTTTAAACTTCCCAGAAGGTCAC----GGTTAAAGCCATTT i mm10.chr11 I 237 C 0 s canFam3.chr9 39346104 525 - 61074082 -AACATATAAGGAGTTAGCCTGGTACACTGGCTTTTCAGAATGACTC-----AGCTAAGACCTCAAATTTGGAGTAGGTTACAACTGA----TCTCCAAACAGCACAGCTTGAGACTATATATCA-----------CAAG--TTCCCATCACTGGCAAGAA-----GAGCAAAGTGCACG------CCCCTTGTTGCCAGTGACAGTAGTAATAAA--TG----TATGTG---------------------------AACATATTTTCTCATAGAAGCTGTTTTTATTTTACTTACTTGACTTCTGAACTCTCCAGAAGGCTGCGGTATATGGCAATCTCACACTCCAGCCGGGACTTGACGTCCAGCAGAATCTCATATTCTTGGTTCTGTCTTTCCAGGGCACACCGTATCTCTGCCAGCTGAGCCTCTATGTTATCGACCAGACACTGGATCTGGGCCAGTAAAGCTGTGTAGCGGGCCTCTGTCTCCACCAAGATGCATTCTTGGGAATCTCTCTACCATGGAGGAGGAAAGTATGACTTACAATGATGACCTCTTGGAGCCT------AGGTCATGTGTGAAATGAATCATTT i canFam3.chr9 C 0 C 0 a score=803484.000000 s hg38.chr17_JH159146v1_alt 109968 235 + 278131 AAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCACTTTATTTATTGTTTCCTAATCAAA-TAAATCCAAAACCCAAATGATCAACTATGCTAAAAtctgctttcctttatctcttccctctttctctctttctc---tttttgcttctctgtaagtatttgtttcactttctctttctTGACCAACCAATAGTCTCGCACCACACTTTCCT---ACTTAGGAGAGAAAAAA s panTro4.chr17 66230437 235 - 82630442 AAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGAACTTTATTTATTGTTTCCTAATCAAA-TAAATCCAAAACCCAAATGATCAACTATGCTAAAATCTGctttcctttatctcttccctctttctctctttctc---tttttgcttctctgtaagtatttgtttcactttctctttcttGACCAACCAATAATCTCGCACCACACTTTCCT---ACTTAGGAGAGAAAAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24762656 231 - 73212453 TAAGAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCAC----TTTATTGTTTCCTAATCAAA-TAAATCCAAAACCCAAATGATCAACTATGCTAAAATCTGCTTTCCTTTATCTCTTCCCTCTTTCTCTCTTTCTC---TTTTTGCTTCTCTGTAAGTATTTGTTTCACTTTCTCTGTCTTGACCACCCAATAATCTCGCACCACACTTTCCT---ACTTAGGAGAGAAAAAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47985666 237 - 81552678 TAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCACTTTATTTATTGTTTCCTAATCAAATTAAATCCAAAACCCAAATGATCAATTATGCTAAAAtctgctttcctttgtctcttccctctttctctctttctc--ttttttgcttctctgtaagtatgtatttcactttctctttctTGACCACCCAATAATCTTGAACCACACTTTCCT---ACTTAGGAGAGGAAAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53090590 232 + 80904711 AAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCACTTTATTTATTGTTTCCTAAGCAAA-TAAATCCAAAACCCAAATGATCAACTATGCTAAAATCTGCTTTCCTTTATCTCCTCCCTCTTTCTCTCTTTCTCTTTTTTTTGCCTCTTTTTAAGTATTTATTTCACTT------TCTTGACCACCTGATAATCTTGCACCACACTTTCCT---ACTTAGGAGAGAAAAAG i rheMac3.chr16 I 316 C 0 s macFas5.chr16 52613459 232 + 80997621 AAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCACTTTATTTATTGTTTCCTAAGCAAA-TAAATCCAAAACCCAAATGATCAACTATGCTAAAAtctgctttcctttatctcctccctctttctctctttctcttttttttgcctctttTTAAGTATTTATTTCACTT------TCTTGACCACCTGATAATCTTGCACCACACTTTCCT---ACTTAGGAGAGAAAAAG i macFas5.chr16 I 316 C 0 s papAnu2.chr16 47658260 231 + 74645514 aaaaaaaatggtttctttgTGACA-CTACTGATAGATCTCCAAGCactttatttattgtttcctaAGCAAA-TAAATCCAAAACCCAAATGACCAACTATGCTAAAATCTGctttcctttatctcctccctctttctctctttctc-tttttttgcctctttttaagtatttatttcactt------tcttgacCACCTGATAATCTTGCACCACACTTTCCT---Acttaggagagaaaaag i papAnu2.chr16 I 269 C 0 s chlSab2.chr16 9926050 231 - 75148670 AAAAAAAATGGTTTCTTTGTGACA-CTACTGATAGATCTCCAAGCACTTTATTTATTATTTCCTAAGCAAA-TAAATCCAAAACCCAAATGATAAACTATGCTAAAATCTGCTTTCCTTTATCTCCTCCCTCTTTCTCTCTTTCTC-TTTTTTTGCCTCTTTTTAAGTATTTATTTCACTT------TCTTGACCACCTGATAATCTTGCACCACACTTTCCT---ACTTAGGAGAGAAAAAG i chlSab2.chr16 I 236 C 0 s calJac3.chr5 112798549 236 + 159171411 AAAAAAAATGGTTTCTTTCTGACA-CTACTAATAGATTTCCAAGCCCTTTATTTATTGCTTCCTAATCAAA-TAAATAAAAAACCCAAATGATCAACTATGCTAAAATCTGCTTTCCTTGATCTCTTCCCTCTGTCTCTCTCTCTC--TTTTTTGCCTCTCTTTAAGTGTTTGTTTTGTTTCCTTTTTCTTGACCACCTGATAATCTCCCACCACACTTTCCT---ACTTAGGAGAGAAAAAA i calJac3.chr5 I 1 C 0 s mm10.chr11 99516757 191 + 122082543 -TAAACGATAGCTTCTCTGTGACA-GTACTAAGGGTTCTCTAAGTCC----TTTATTACTTCCTAACCAAA-TAAATCCAAA---CAAA--------------AATGTTTGCTTTCCTTTATCCCTTCTCT-TTCCTATCTCTCTG----GTTTATTTCTCTTT--GTCTTTTTTTT----------TTAAAACCACT---TAGTCTC--------TTTTCCTCTGGCTCATGAGAGAGAAAA i mm10.chr11 C 0 C 0 s canFam3.chr9 39346629 212 - 61074082 -TAAACAATGGTTTCTTTGTGACAGGTACTAATGAGTCTCCAAACCCT---CTTATTACTTCCTAACCAAA-TAAATCCAAAACAAAAATTATCTACTATGCTAAAGCTCACTTCCTTTTATC------------CTCTTTATTTA---TTTTTGCCTCCCTTTAAGTATTTACTTCTCTT------TATTATTCACTTGATAATATGCTACCACACTT--CT---ATCTGTGAGACAAAAAA i canFam3.chr9 C 0 C 0 a score=101237.000000 s hg38.chr17_JH159146v1_alt 110203 33 + 278131 TAAT---AACTTAATGCACACCCAGGCATTAAAAAT s panTro4.chr17 66230672 33 - 82630442 TAAT---AACTTAATGCACACCCAGGCATTAAAAAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24762887 33 - 73212453 AAAT---AACTTATTGCACACCCAGGCATTAAAAAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47985903 32 - 81552678 -AAT---AACTTATTGCACACCCAGGCATTAAAAAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53090822 33 + 80904711 AAAT---AACTTATTGCACACCCAGGCATTAAAAAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52613691 33 + 80997621 AAAT---AACTTATTGCACACCCAGGCATTAAAAAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47658491 33 + 74645514 aaat---aacttattGCACACCCAGGCATTAAAAAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9926281 33 - 75148670 AAAT---AACTTATTGCACACCCAGGCATTAAAAAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112798785 28 + 159171411 AAA--------TTTTGCACACACAGGCATTAAAAAT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39346841 36 - 61074082 ATATTCCAACTTATTTCACACCTGGGCTTTAAGAAC i canFam3.chr9 C 0 C 0 e mm10.chr11 99516948 0 + 122082543 C a score=14781.000000 s hg38.chr17_JH159146v1_alt 110236 6 + 278131 GCATTA s panTro4.chr17 66230705 6 - 82630442 GCATTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24762920 6 - 73212453 GCATTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47985935 6 - 81552678 GCATTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53090855 6 + 80904711 GCATCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52613724 6 + 80997621 GCATCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47658524 6 + 74645514 GCatta i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9926314 6 - 75148670 GCATTA i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39346877 6 - 61074082 CTGTTA i canFam3.chr9 C 0 I 264 e mm10.chr11 99516948 0 + 122082543 C e calJac3.chr5 112798813 0 + 159171411 C a score=254469.000000 s hg38.chr17_JH159146v1_alt 110242 104 + 278131 CTggctgggcgcagtggctcacgcctataatcccagcactttgggaggcccaggtgggtggatcacaaggtcaggagttcaagaccagcctggccaagatggtg s panTro4.chr17 66230711 104 - 82630442 CTggctgggcgcagtggctcacgcctataatcccagcactttgggaggccaaggtgggtggatcacaaggtcaggagttcaagaccagcctggccaagatggtg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24762926 104 - 73212453 CTggctgggcgcagtggctcatgcctataatcccagcactttgggaggctgaggtgggtggatcacaaggtcaggagttcaagaccagcctggccaagatggtg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47985941 104 - 81552678 CTggctgggcacagtggcttatgcctataatctcagcactttgggaggccaaggtgggtggatcacaaggtcaggagttcaagaccagcctggccaagatggcg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53090861 104 + 80904711 CTggctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtccagagttcaagaccagcctggtcaagatagtg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52613730 104 + 80997621 CTggctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtccagagttcaagaccagcctggtcaagatagtg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47658530 104 + 74645514 ctggctgggcatggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcacaaggtccagagttcaagaccagcctggtcaagatagtg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9926320 104 - 75148670 CTggctgggcatggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtccagagttcaagaccagcctggtcaagatagtg i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39346883 264 - 61074082 I e mm10.chr11 99516948 0 + 122082543 C e calJac3.chr5 112798813 0 + 159171411 C a score=399729.000000 s hg38.chr17_JH159146v1_alt 110346 182 + 278131 aaaccccgtctctactaaaaatac---aaaaaattagctgggtgttctggtgggcacctgtaatcccagctacttgggaggctaaggcagagaattgcttgaacccgggaggtggaggttgcagtgacccgagatcgtgccactgctgtccagtctgggcgacagagtgagactccatctcaaaa s panTro4.chr17 66230815 182 - 82630442 aaaccccgtctctactaaaaatac---aaaaaattagctgggtgttgtggtgggcacctgtaatcccagctacttgggaggctaaggcagagaattgcttgaacccgggaggtggaggttgcagtgacccgagatcgtgccactgctgtccagtctgggcgacagagtgagactccatctcaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24763030 182 - 73212453 aaaccccatctctactaaaaatac---aaaaaattagctgggtgtggtggtgggcacctgtaatcccagctgcttgggaggctaaggcagagaattgcttgaacctgggaggtggaggttgcagtgacccgagatcatgccattgctctccagtctgggcgacagagtgagactctatctcaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47986045 182 - 81552678 aaacgctgtctctactaaaaatac---aaaaaattagctggatgtggtggtgggtgcctgtaatcccagctactcgggaggctgaggcagagaattgcttgaacccgggaggtggaggttgtagtgacccgagatcgtgccactgctctccagtctgggcgacagagcgagactccatctcaaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53090965 184 + 80904711 aaaccccatctctactaaaaatac-aaaaaaaattagctaggtgtggtcgtgggcacctgtaatcccagctacttgggaggctgaggcagagaattgcttgaacccaggaagtagaggttgcaatgacctgagatcaagccactgctctccagtctgggcaacagagtgagactccatttcaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52613834 184 + 80997621 aaaccccatctctactaaaaatac-aaaaaaaattagctaggtgtggtcgtgggcacctgtaatcccagctacttgggaggctgaggcagagaattgcttgaacccaggaagtagaggttgcaatgacctgagatcaagccactgctctccagtctgggcaacagagtgagactccatttcaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47658634 185 + 74645514 aaaccccatctctactaaaaatacaaaaaaaaattagctaggtgtggtcgtgggcacctataatcccagctactcgggaggctgaggcagagaattgcttgaacccaggaagtagaggttgcaatgacctgagatcacgccattgctctccagtctgggcaacagagtgagactccatttcaaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9926424 185 - 75148670 aaaccccatctctactaaaaatacaaaaaaaaattagctaggtgtggtcgtgggcacctgtaatcccagctactcgggaggctgaggcagagaattgcttgaacccatgaagtagaggttgcaatgacctgagatcacgccactgctctccagtctgggcaacagagtgagactccatttcaaaa i chlSab2.chr16 C 0 C 0 s mm10.chr11 99516948 39 + 122082543 AACCCCCACCTC----------AC----------------------------------------------TTCACTGAAGGCTCAGGCA------------------------------------------------------------------------------------------TTAAAA i mm10.chr11 C 0 C 0 e canFam3.chr9 39346883 264 - 61074082 I e calJac3.chr5 112798813 0 + 159171411 C a score=-11966.000000 s hg38.chr17_JH159146v1_alt 110528 16 + 278131 agaaa-----------------aaaa-----------aaaaaa-a s panTro4.chr17 66230997 15 - 82630442 agaaa-----------------aaaa-----------aaaaaa-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24763212 17 - 73212453 agaaa-----------------aaaa-----------aaaaaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47986227 13 - 81552678 agaaa-----------------aaaa-----------aaaa---- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53091149 34 + 80904711 acaaaacaaaacaaaacaaaacaaaa-----------aacaaaac i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52614018 34 + 80997621 acaaaacaaaacaaaacaaaacaaaa-----------AACAAAAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47658819 34 + 74645514 ataaaacaaaccaaacaaaacaaaaa-----------aacaaaac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9926609 45 - 75148670 acaaaacaaaacaaaacaaaacaaaacaaaacaaaacaCCAAAAC i chlSab2.chr16 C 0 C 0 s mm10.chr11 99516987 3 + 122082543 TCA------------------------------------------ i mm10.chr11 C 0 C 0 s canFam3.chr9 39347147 16 - 61074082 ----------------ataaataaag-----------aaaaaa-- i canFam3.chr9 I 264 C 0 e calJac3.chr5 112798813 0 + 159171411 C a score=7109003.000000 s hg38.chr17_JH159146v1_alt 110544 1845 + 278131 GCATTACCATGGCACTTCATTCAGTGAGTGTTCGTGTCTTAAAAAAGGAAGGAAGCAATGTTTTACCATATACAATTTATCCACCAGAtcaattcctttatatgtaaaatatgaaagttgaaa--ctg--atgagtaaatttcattcctgctctatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAATAGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaaactgaggttcaagtggttcaatatgttgtccaaggtcacatgactagctggtgacaaaaccag-tgtggggcaaggtcttcccaaaagccttcac---------------------------atcagagcatgtaagcaattctctactTcagagaggc-attatcatgagacagaa-tgatactggctttggaatctaaactctggctcagactcttatttcttttgtgactttggatgagtttcttaatgtctcaggatctcagtgtctc------tataaaataggtgggctgaaacttaccttggattt-gcttgggaaaatcactttagctcttggagcctcatctgtaacattcg-ttaataattatgcca-ccccccctcttagga--ttg-ctttataaatctcatgtgatagcttgt-aaaaatgctttgcatataataa----aatgctctcccagtgtttcccaaagtgtacttcatgaatcattaataccatgagatgttctaaaaaaa-----------gtggggggatccacagtcaaataagttttggaatgctgaataccatatacccccttcctggagattcatggtgtatattagcttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtgcagcgtttcgtagacttatttggccacaaagctctttttcagccatagacgctttaacaaat-gaggaactattgttctgaaagacacagtttgggaaatactgcagcacacaggtgtaagggactgttTCCATCTTTGCTGAGCTAGGCTTGGTCAGCTTGCTCAGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACACTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TGTTTTTGACTTTTCTATATCCCCCACCTGCGTGTTGAACCACTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGGCTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAGCAGAAGGGGCAGCAGTCACTTCAATGTCAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTAAGGAAAGAAAAAGACTGTGAAGTCACTTGGTGAACAGATAACC---CCTT--TGTGTTCTTGTTTCACTCTAACTGCTACGATTTAGCTTAATTGTGTCTAAAATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATTGAGATGCTATAAAATGATTTAAGACTCTTTCAGGTAGGACTGTGTGTTTAAATGTGTGCAAAATT--AAAAAAAAATGAGTAGCAA-------------GACCAGAGTTCCAAAAAATTTAGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTCTATGGTGCAAATACGGGATTGTGCCAATATTGACTTGCACCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGCCTGTATAGGGATGCCTACA------AACATGGGAAGACTG s panTro4.chr17 66231012 1844 - 82630442 GCATTACCATGGCACTTCATTCAGTGAGTGTTCGTGTCTTAAAAAAGGAAGCAAGCAATGTTTTACCATATACAATTTATCCACCAGAtcaattcctttatatgtaaaatatgaaagttgaaa--ctg--atgagtaaatttcattcctgctctatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAATCGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaaactgaggttcaagtggttcaatatgttgtccaaggtcacatgactagctggtgacaaaaccag-tgtggggcaaggtcttcccaaaagccttcac---------------------------atcagagcatgtaagcaattctctactTcagagaggc-attatcatgagacagaa-tgatactggctttggaatctaaactctggctcagactcttatttcttttgtgactttggatgagtttcttaatgtctcaggatctcagtgtctc------tataaaataggtgggctgaaacttaccttggattt-gcttgggaaaatcactttagctcttggagcctcatctgtaacattcg-ttaataattatgcca-ccccccctcttagga--ttg-ctttataaatctcatgtgatagcttgt-aaaagtgctttgcatataataa----aatgctctcccagtgtttcccaaagtgtacttcatgaatcattaataccatgagatgttctaaaaaaa-----------gtggggggatccacagtcaaataagttttggaatgctgaataccacatacccccttcttggagattcatggtgtatattagcttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcgtagacttatttggccacaaagctctttttcagccatagacgctttaacaaat-gaggaactattgttctgaaagacacagtttgggaaatactgcaacacacaggtgtaagggactgttTCCATCTTTGCTGAGCTAGGCTTGGTCAGCTTGCTCAGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACACTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TGTTTTTGACTTTTCTATATCCCCCACCTGCGTGTTGAACCACTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAGCAGAAGGGGCAGCAGTCACTTCAATGTCAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTAAGGAAAGAAAAAGACTGTGAAGTCACTTGGTGAACAGATAACC---CCTT--TGTGTTCTTGTTTCACTCTAACTGCTACGATTTAGCTTAATTGTGTCTAAAATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATTGAGATGCTATAAAATGATTTAAGACTCTTTCAGGTAGGACTGTGTGTTTAAATGTGTGCAAAATT--AAAAAAAA-TGAGTAGCAA-------------GACCAGAGTTCCAAAAAATTTAGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTCTATGGTGCAAATACGGGATTGTGCCAATATTGACTTGCACCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGCCTGTGTAGGGATGCCTACA------AACATGGGAAGACTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24763229 1833 - 73212453 GCATTACCATGGCACTTCATTCAGTGAGTGTTTGTATCTTAAAAAAGGAAGCAAGCAATGTTTAACCATATACAATTTATCTACCAGAtcaattcctttatatgtaaaatatgaaagttgaaa--ctg--atgagtaaatttcattcctgctgtatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAATAGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaaactgaggttcaagtggttcaatatgttgtccaaggtcacatgactagctggtgacaaaatcag-tgtggggcaaggtcttcccaaaacccTTCAC---------------------------ATCAGAGCATGTAAGCAATTCTCTACTTcagagaggc-attatcatgagacagaa-tggtactggctttggaatctaaactctggctcagactcttatttcttttgtgactttggatgagtttcttaatgtctcaggatctcagtgtctctatt--tataaaattggtgggctgaaacttgccttggattt-gcttgggaaaatcactttagctcttggagcctcatctgtaacattca-ttaataattatgcca-tcccccc-cttagga--tta-ctttataaatctcacgtgatagcttgt-aaaaatgctttgcatataataa----aatgctctcccagtgtTTCCCAAAGTGTACTTCATGAATCATTAATACCATGGGATGTTCTAAAAAAA---------AGGGGGGGGGAtccacagtcaaataagttttggaatgctgaatatcatatacccctttcttggagattcatggtgtatattagcttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcccagacttatttggccacaaagttctttttcagccatagaccctttaacaaat-gaggaactaatattctgagagacacagtttgggaaatactgCAACACACAAGTGTAAGGGACTGTTTCCATCTTTGCTGAGCTAGGCTTGGTCAGCTTGCTCAGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTGT---TGTTTTTGACTTTTCTATTTCCCCCACCTGCGTGTTGAACCACTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTCAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTAAGGAAAGAAAAAGAATGTGAAGTCATCTGGTGAACAGATGACA---CCCT--TGTGTTCTTATTTCACTCTAACTGCTACGATTTAGCTTAATTGTGTCTAAAATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATTGAGATGCTATAAAATGATTTAAGACTCTTTCAGGTAGGACTGTGTGTTTA-----------------AAAAAAAA-TGAGTAGCAA-------------GACCAGAGTTCC-AAAAATTTGGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTCTATGGTGCAAATACGGGATTGTGCCAATATTGACTTGCACCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGCCTGTGTAGGGATGCCTACA------AACATGGGAAGACTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47986240 1836 - 81552678 GCATTACCATGGCACTTCATTCAGTGAGTGTTTGTATCTTAAAAAAGGAAGACAGCAATGTTTAACCATATACAATTTATCCACCAGATCAATTCCTTTATATGTAAAATATGAAAGTTGAAA--CTG--ATGAGTAAATTTCATTCCTGCTCTATCATTCTGTAAGTCTGTGGATAATGATGGGATTTTAGGTTTTAATAGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaaactgaggttcaagtggttcaatatgtcgtccaaggtcacatgactagctggtgacaaaaccag-tgtggggcaaggtcttcctaaaacccttcac---------------------------atcagagcatgtaagcaattctctactTcagagaggc-attatcatgagacagaa-tggtactggctttggaatccaaactctgactcagactcttatttcttttgtgactttggacaagtttcttaatgtctcaggatctcagtgtctctatt--tatgaaataggtgggctgaaactcaccttggattt-gcttgggaaaatcactttagctcttggagcctcatctg--------------taattatgcca-accccct-cctagga--tta-ctttataaatctcacgtgatagcttgtaaaaaatgctttgcatataataa----aatgctctcccagtgtttcccaaagtgtacttcatgaatcattaata-cacgagatgttctaaaaaaaa--------aaaggggagcatccacagtcaaataagttttggaatgctgaataccatatatccccttcttggagattcatggtatatattagcttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcccagacttatttggccacagagttctttttcagccatagaccctttaacaaat-gaggaactattgttctgagagacacagtttgggaaatactgcaacacacaggtgtaagggactgttGCCATCTTTGCTGAGCTAGGCTTGGTCAGCTTGCTCAGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAATTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGTTCCTCTATCTGAAACACACAACCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TGTTTTTGACTTTTCTATTTCCCCCACCTGCGTGTTGAACCATTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGAGCAGCAGTCACTTCAATGTCAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTAAGGAAAGAAAAAGAATGTGAAGTCACTTCGTGAACAGATGACC---CCCT--TGTGTTCTTGTTTCACTCTAACTGCTATGA-TTAACTCAATTGTGTCTAACATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATTGAGATGCTATAAAATGATTTAAGACTATTTCAGGTAGGACTGTGTGTTTAAATATGTGCAAAATT--AAAAAAAA-TGAGTAGCAA-------------GACCAGAGTTCCAAAAAATTTAGATCATTTCCAGGGCGGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGACAGA-----TTATAGTCTCTATGGTGCAAATACGGGATTGTGCCAATATTGATTTGCACCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGCCTGTGTAGGGATGCCTACA------AACATGGGAAGACTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53091183 1856 + 80904711 CCATTACCATGGCACTTCATTCAGTGAGTGTTTGTATCATCGAAAAGGAAGCAAGAAATGTTTAACCATATACAATTTATCCACCAGAAcaattcctttatatgtaaaatatgaatgttgaaa--ctg--atgagtaaatttcattcctgttctatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAAtag-ct--attatttgtgtgattaccccaatttttatagatgagaaacctgaggttcaagtggttcaatatgttgtccaaggtcacatgactaaccggtgacaaaaccag-tgtggggcaaggtcttcctaaAATGCTTCAC---------------------------ATCAGAGCATGTAAGCAATTCTCTGCTTcagagaggc-attatcatgagacagaa-tggtactggctttggaatctaaactctggctcagactcttatttcttttgtgactttggacaagtttctcaacgtctcaggatctcagtgtctctatt--tataaaataggtgggctgaaacttaccttggattt-gcttgggaaaatcaccttagctcttggagcctcgtctgtaacatgcg-ttaataattatgcca-cccccct-tttagga--tta-ctttataaatttcacgtgatagcttgt-aaaaatgctttgcatataataa----aatgctctcccagtgtttcccaaagtgtacttcatgaatcattaataccatgagatgctctaaaaaaagtgggcaggggggcaggggatccacagtcaaataagttttggaatgctgaataccatatatccccttcttggagattcatggtgtatattaacttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcccagacttatttggccacaaagtcctttttcagccatagaccctttaacaaaa-gaggaactgttgttctgagagacacagtttgggaaatactgcaacacacaggtgtcagggactgttGCCATCTGTGCTGAGCACGGCTTGGTCAGCTTGCTCGGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TCTTTTTGACTTTTCTATTTCCCCCACCTGTGTGTTGAACCATTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTGAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTGTGAAAAGAAGAAGAATGTGAAGTCACTTGGTGAACAGATGACC---CCCT--TGTGTTCTTGTTTCACTCTAATTGCTACGATTTAGCTTAATTATGTCTAAAATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATT--GATGCTATAAAATGATTTACGACTATTTCAAGTAGGACTGTGTGTTTAAATATGTGCAAAATT--AAAAAAAAATGAGTAGCAA-------------GACCAGAGTTCCAAAAACTTTAGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTTTATGGTACAAATATGGGATTGTGCCAATATTGACTTGCAGCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGTCTGTGTAGGGATGCCTACA------AACACGGGAAGACTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52614052 1855 + 80997621 CCATTACCATGGCACTTCATTCAGTGAGTGTTTGTATCATCGAAAAGGAAGCAAGAAATGTTTAACCATATACAATTTATCCACCAGAAcaattcctttatatgtaaaatatgaatgttgaaa--ctg--atgagtaaatttcattcctgttctatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAAtag-ct--attatttgtgtgattaccccaatttttatagatgagaaacctgaggttcaagtggttcaatatgttgtccaaggtcacatgactaaccggtgacaaaaccag-tgtggggcaaggtcttcctaaAATGCTTCAC---------------------------ATCAGAGCATGTAAGCAATTCTCTGCTTcagagaggc-attatcatgagacagaa-tggtactggctttggaatctaaactctggctcagactcttatttcttttgtgactttggacaagtttctcaacgtctcaggatctcagtgtctctatt--tataaaataggtgggctgaaacttaccttggattt-gcttgggaaaatcaccttagctcttggagcctcgtctgtaacatgcg-ttaataattatgcca-cccccct-tttagga--tta-ctttataaatttcacgtgatagcttgt-aaaaatgctttgcatataataa----catgctctcccagtgtttcccaaagtgtacttcatgaatcattaataccatgagatgctctaaaaaaagtgggcaggggggcaggggatccacagtcaaataagttttggaatgctgaataccatatatccccttcttggagattcatggtgtatattaacttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcccagacttatttggccacaaagtcctttttcagccatagaccctttaacaaaa-gaggaactgttgttctgagagacacagtttgggaaatactgcaacacacaggtgtcagggactgttGCCATCTGTGCTGAGCACGGCTTGGTCAGCTTGCTCGGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TCTTTTTGACTTTTCTATTTCCCCCACCTGTGTGTTGAACCATTGTTCCACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTGAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTGTGAAAAGAAGAAGAATGTGAAGTCACTTGGTGAACAGATGACC---CCC---TGTGTTCTTGTTTCACTCTAATTGCTACGATTTAGCTTAATTATGTCTAAAATATAGCCCACAACAAAGGAATACATGATTTACAGGTGTTATT--GATGCTATAAAATGATTTACGACTATTTCAAGTAGGACTGTGTGTTTAAATATGTGCAAAATT--AAAAAAAAATGAGTAGCAA-------------GACCAGAGTTCCAAAAACTTTAGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTTTATGGTACAAATATGGGATTGTGCCAATATTGACTTGCAGCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGTCTGTGTAGGGATGCCTACA------AACACGGGAAGACTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47658853 1858 + 74645514 ccatgacCATGGCACTTCATTCAGTGAGTGTTTGTATCATCGAAAAGGAAGCAAGAAATGTTTAACCATATACAATTTATCCACCAGAACAATtcctttatatgtaaaatatgataGTTGAAA--CCG--ATGAGTAAATTTCATTCCTGTTCTATCATTCTGTAAGTCTATGGATAATGATGGGATTTTAGGTTTTAATAGCCT--ATTATTTGCATGATTATCCcaatttttatagatgagaaacctGAGGTTCAAGTGGTTCAATAtgttgtccaaggtcacatgactAACTGGTGACAAAACCAG-TGTGGGGCAAGGTCTTCCTAAAATGCTTCAC---------------------------ATCAGAGCATGTAAGCAGTTCTCTACTTCAGAGAGGCAATTATCATGAGACAGAA-TGGTACTGGCTTTGGAATCTAAACTCTGGCTCAGACTCTTATTTCttttgtgactttggacaagtttctCAACATCTCAGGATCTCAGTGtctctatt--tataaaatagatgGGCTGAAACTTACCTTGGATTT-GCTTGGGAAAATTACCTTAGCTCTTGGAGCCCTGTCTGTAACATGCG-TTAATAATTATGCCAcccccccT-TTTAGGA--TTA-CTTTATAAATTTCACGTGATAGCTTGT-AAAAATGCTTTGCATATAATAA----AATGCTCTCCCAGTGTTTCCCAAAGTATACTTCATGAATCATTAATACCATGAGATGCTCTaaaaaaaGTGGGC---GGAGCGGGGGATCCACAGTCAAATAAGTTTTGGAATGCTGAATACCATATATCCCCTTCTTGGAGATTCATGGTGTATATTAACTTATCAA-TGGCTCACAGGAAGGCACCCTGTTTAACCTTGGTTTAGTCCAGCATTTCCCAGACTTATTTGGCCACAAAGTCCTTTTTCAGCCATAGACCCTTTAACAAAA-GAGGAACTGTTGTTCTGAGAGACACAGTTTGGGAAATACTGCAACACACAGGTGTCAGGGACTGTTGCCATCTGTGCTGAGCACGGCTTGGTCAGCTTGCTCGGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGAGACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TCTTTTTGACTTTTCTATTTCTCCCACCTGTGTGTTGAACCATTGTTCTACATCTTTGCGGTTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTGAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTgtgaaaagaagaagaatgtgaAGTCACTTGGTGAGCAGATGACC---CCGT--TGTGTTCTTGTTTCACTCTAATTGCTACGATTTAGCTTAATTATGTCTAAAATATAGCCCACAACAAAGGAATACATGACTTACAGGTGTTATA--GGTGCTATAAAATGATTTAAGACTATTTCAAGTAGGACTGTGTGTTTAAATAtgtgcaaaattaaaaaaaaaaatgagtcgcAA-------------GACCAGAGTTCCAAAAAATTTCGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTCTATAGTACAAATATGGGATTGTGCCAATATTGACTTGCAGCAATATTGACTTGTACCAATGGGAGGTGGCAGAAGTCTGTGTAGGGATGCCTACA------AACACGGGAAAACTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9926654 1852 - 75148670 CCATTACCATGGCACTTCATTCAGTGAGTGTTTGTATCATCGAAAAGGAAGCAAGAAATGTTTAACCATATACAATTTATCCACCAGAAcaattcctttatatgtaaaatatgaaagttgaaa--ctg--atgagtaaatttcattcctgttctatcattctgtaagtctatgGATAATGATGGGATTTTAGGTTTTAATAGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaacctgaggttcaagtggttcaatatgttgtccaaggtcacatgactaaccagtgacaaaaccaa-tgtggggcaaggtcttcctaaAATGCTTCAC---------------------------ATCAGAGCATGTAAGCAATTCTCTACTTcagagaggc-attatcatgagacagaa-tggtactggctttggaatctaaactctggctcagactc--atttcttttgtgactttggacaagtttctcaatgtctcaggatctcagtgtctctatt--tataaaataggtgggctgaaacttaccttggattt-gcttgggaaaatcaccttagctcttggagcctcgtctgtaatatgcg-ttaataattatgcca-cccccct-tttagga--tta-ctttataaatttcacgtgatagcttgt-aaaaatgctttgcatataataa----aatgctctcccagtgtttcccaaagtgtacttcatgaatcattaataccatgagatgctctaaaaaaagtgcgg---ggtgggggggatccacagtcaaataaggtttggaatgctgaataccgtatatccccttcttggagattcatggtgtatattaacttattaa-tggctcacaggaaggcaccctgtttaaccttggtttagtccagcatttcccagacttatttggccacgaagtcctttttcagccatagaccctttaaccaaa-gaggaactgttgttctgagagacacagtttgggaaatactgcaacacacaggtgtcagggactgttGCCATCTGTGCTGAGCACAGCTTGGTCAGCTTGCTTGGTACCATTCGATGCTGGGCCTGCAGTTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGTTGATTCAGCTCCTCTATCTGAAACACACAGCCAGACACTGAGAATATTATGGGAGGAAAACATGACTTTGATTAAAGGGC-CC-TAGAAATGCAGCATCAGCTTAT---TCTTTTTGACTTTTCTATTTTCCCCACCTGTGTGTTGAACCATTGTTCCGCATCTTTGCGATTTGTCTCCATGATGGACTCATATTGACATCTCATTTCTTGTAGAACCTGGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTGAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTGTGAAAAGAAGAAGAATGTGAAGTCACTTGGTGAACAGATGACC---CCCT--TGTGTTCTTGTTTCACTCTAATTGCTACGATTTAGCTTAATTACATCTAAAATATAGCCCACAACACAGGAATACATGATTTACAGGTGTTATT--GATGCTATAAAATGATTTAAGACTATTTCAAGTAGGACTGTGTGTTTAAATATGTGCAAAATT--AAAAAAAAATGAGTAGCAA-------------GACCAGAGTTCCAAAAAATTTAGATCATTTCCAGGGCTGGATAATGGGTGAAACAGGATAAAGGTGGAATTGATCATGAGAGA-----TTATAGTCTCTATGGTACAAATATGGGATTGTGCCAATATTGACTTGCAGCAATACTGACTTGTACCAATGGGAGGTGGCAGAAGTCTGTGTAGGGATGCCTACA------AACACAGGAAGACTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112798813 1818 + 159171411 GCATTACCATGGCACTTCATTCAGTGAGTGTTTCTGTCTT-AAAAAGAAAGCAAGTAGTGTTTAACCATATACAATGTCTTCACCAGATCAATTCCTTTATATGTAGACTATGAAAGTTGAAA--CTG--ATGAGTAAATTTGATTCCTGCTCTATCATTCTCTAAGTCTAGGGATAATGATGGGATTTTAGGTTTTAGTAGCCT--ATTATTTgcatgattatcccaatttttatagatgagaaaactgaggttcaagaggttcaatatgttgtccaagcccacatgactagctggtgaaaaaaccag-tgtggggcaaggtcttcctaaAACCCTTCAC---------------------------ATCGGAGCATTTAAGCAGCTCTCTGCTTcagagaggc-attatcgtgagacagaa-tggcactggctttggaatctcaactctggctcagactc---------ttgtgacactggacaagtttcttaatggctcaggatctcagtgtctctatt--tacaaaataggtggactgaaacttacttggga-tt-gctggggaaaatcaccttagctcttggagcctcgtctgtaacattaa-ttaataattatgcca-cccccca---tagga--tta-ctttataaatctcatgtgataacttgt-aaaaatgctttgcatataataa----aatgttCTCCcagtgtttcccaaagtgtatttcacgagtcattaataccatgagatgctctaaaccaa-------------ggggggatccacagtcaaataagttttggaatgctgaataacccatttccccttcttggagattcatggtgtacatttgcttattaa-aggcttacagaaaggcaccctgtttaaccttagtttagtccagtatttcccagacttatttggccacaaagtccctttttagccatagaccctttgacaaaacaaggaatgattgttctaagagacacagtttgggaaatactgCAACACACAGGTGTCAGGGACTGCTGCCACTTTTGCTGTGATAGGCTTGGTCAGCTTGCTTGGTACCATTCGATGCTGGGCCTGCAGGTCAACCTCCAGAGTGTTCACAGTGCGTCTCAGTTCTATGATCTCCTTTTGGCAGCATTGCTGCTGTTGAGAGCTGGTCACCACTTGCTGATTCAGCTCCTCCATCTGAAACACACAGTCAGAAACTGAGGCTATTATGGGAGGAAAACATGACTTTGAGTAAAGGGT-CC-TAGAAATGCAGCATCAGCTTAT---TGTTTTTGACTTTTCTATTTCCCCCACCTGCGCGCTGAACCATTGTTCTGCATCTTTGCGGTTTGTCTCCATGATGGACTCATAGCGACATCTCATTTCTTGTAGGACCTGGTTTAGGTCAACAGAAGGAGCAGCAGTCACTTCAATGTGAAGTCTCTCCCCAAGCTGACACTGTAAAGAATTGATTTCCTATGGGAAGAAAAAGAATGTGAAGTCACTTGGTGAACAGAGGACT---CCCT--TGTGTTCTTGTTTCAGTCTAACTGCTGTGATTTAGCATAATTGTGTCTAAAATATAGCCCACAACAAAGGAATACATGCTTTACAGGTGTTATTAAGAGGCTATAAAATGATTTAAGGCTATTTCAAGTAGGACTGTGTGTTTAAATATGTGCAAAATT--TTAAAAAAATGAGTAGCAA-------------GACCAGAGTTCCAAAAAATTTAGATCATTTTCAGGGCTGGATAATGGGTAAAACAGCATAAAGGTGGAATTGATCATAAGAGC-----TCATAGTCTCTATGGTGCAAATATGGGATTGTGCCAATAT----------------TGACTTGTACTAATGAGAGGTGGCAGAAGTCTGTACAGAGATGCCTACA------CACATGGGAAGACTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99516990 1835 + 122082543 ----TACCAGGACACCTCATTCAGCCTGCGTTTGAGCCTTTG-AAAGGAAGTGAGCAATGTTTAACTAGAATCATTTGCCTCAGTGTGTCAATTCCTTTATAAGTAAAATATGAGTGTTGAAA--CTGGAATGGGTCAAGTTCTTTCTTGTTCTATCATTTTGTAAGTCTACAGATAATGGCGGGGTTTTAGGTTTTAATAACCTTGGTTATTCACGGGGttatctcaacttttacagatgagaaaaatgaggttcagggaatt---------gcccaacatctcatgagtagcagctgatgtaacc-----tggGG-AGGGTTTTGCTAATGCCTGCCGCTCCGAGCAGGACATGCTTGCCGCTCCTAGCAGGACTTTTGAGTACTGTCTTATTTCTGAGTCGC-AGTCTCAAGAAGCAGA---GATGCTggcagtgggatccgatc-ctgactc--------attcctttggtgactttgggaaggtcactcatagctttgggacctcagtgtctccatc--tgtgaGTAGGGTGTGATGGCTTGTATTGTGGTTCTGGCTTGGGAAAACCACCCTGGTTCTTAGAATGTCATCAGTAAAGTTGG-TGAATGGTTTTACGT-CACCTCT-TTCAGAATGTTG-TGTCATAATCCCAATATGAGAGTTTAC-GATAATGCTTTGCATAAGAGAAATCTAATGCTTTCCTGgtgattccaaaagtgttttccatgggtcatggtcactgtgacatactctggggagga--------gagggaaagcacccataatcaaataagttttggaatgctgagtcctgcaca---cctccttggagatccatggcacatgccactttgtaggctagcttgcagaaaggc--------tagcctttgtgaaatccaacatttccaagacttacttgaccatgaagttcttttctagtcacagaccctttaacTAAT--------------------AGACACAGTTTGGGAAATAGCGTAACACTCAGTCACCGGGGACTGTTGCCACCGGTGTAAGGTTAGGCTTGGTCATCCTGTTGGGTACCATTCTGTGCTGGGCCTGCAGCTCAATCTCGAGGGCACTTATGGTCCGTCTCAGCTCTATGATGTCCTTCTGGCAGCATTGCTGCTGCTGAGAGCTGCTCACTACTTGTTGATTCAGTTCCTCCATCTGAAACA------CAGAGATTCCAGGTAATTTGCAAGG-AAGCATAACAT--ATCTAAGGAC-TCGTAGACATATGG----AGCTTATGGATTTTTTTGACTTGTTGGCTCTCCCAACCTGTGTATTGAACCATTCTTCTACGTCTTTACGGTTTGTCTCCATGATGGACTCGTACCGGCATCTCATTTCTTGTAGGATTTGATTTAGGTCAACAGAAGGGGCAGCTGTTACTTCAATGTTGATTCTGTCCCCTAGTTGGCACTGTAAGGAATTAACTTCCTGTGGAAAAGGAAAGAATGTGAAGTGGTTTAGTGAACAGATGACCATTCCCTACTGAGTTCTTGTTTCAATATTACAGAAATAATTTAGTTTAATTGTGTCTGGAATACAGTACACAACAGAGGGGCACATGACTTGTAGGTGTTATTGGGATGCCCTATGGTGACTGAAGGTGATTTCAGGTATGG--GTGTGCTCGAACTTGTGGGAAAAG--AAGAGGGAATGACTAACAATATTGACTGACAGTATCAAAATTCAGAAATTTTAAGACCATTTATAGAATGAAAAAATGGAGGCAG-ATCACAGAAGTGGGATT--TTATGGAAAGACTACCTACCATCTCTAGGCTGCTCATATGAGCTCATGCCAGAATTGGCTT---------TTTTTTTTTCCCATTAGGATGTGGCAGAA-TCTGTTCCAGGATGTCTATACCAATGAATATGACAAAACTG i mm10.chr11 C 0 I 101 s canFam3.chr9 39347163 1729 - 61074082 ---------------------------atatt-----------aaaaaaaataaaTAA---------ATAAAC-------------------------------TAAGACACAAGTGTTGAAATTTTG--ATGGTTAGAGTTCTTTCCTGCTCCATCATTCTATAAGCCTAGGGATAAT---GGAATCTTTGGCTTGAATAATCT--ATTATTTgcatggttttcccaacatttagagaggagaaaactgaggttcaaggggttaaatgagttgcccatggtcatatgactaattggtgacaaagctagctttggggcagggtcttccaaatactcttcat---------------------------atcagagcatttaaataattccctactttATagagac-agtacaatgaagcagaagtggttccaactttggaacctgaattctggctcagattc--atttcttttgtgacttttaacaagttacttaatgcctcaggacctcagtgtctccattgctataaaataggcaagatggaactcacctgggatttagtgtgggaaaatcacatttgctccctgagcctcatctgtaaaatttgcttaataattatgcca-cctcctt-tataaga--ttatttttataaatt-----tgatagtttgt-aaaaCTATTATGCATGTAATAA----AAAGCTCTCTTACTgtttcccaaagtgtactccatggatcattattgccatgagatgcttttaaagga---------------agggatccacagtcaaataag-tttggaatgctgaataccatatatctccttcttggagatccatagtgtatattagcttattaa-aggcctataggaaggtaccccatttaacctatgtttattccagcatttcccaggcttatttgaccacg--ggccttttttgggcatagacctttcagcaaacagaggaac-----ttcggaggcacacaatttgggaaacattgCAACATGCAGTTGTCAAGGGCTATTGCCATCACAGCTGTGTTAGGCATTG----CATTCTGGGTACCATTCGGTGCTGGGCCTGCAGTTCAATCTCCAGAGCATTCATGGTACGTCTCAGTTCAGTGATCTCCTTCAGGCAGCACTGCTGCTGTTGAGAGCTGGTCACCACCTGCTGGTTCAGTGCCTCCATCTGAAACA--TGGTTAAAGACCATGAATATTATG-AAAGAAAACATGACTTTGATTAAAGGTCACC-TGGAAATGCAATGTCAACTTTT---TGTTTTGGGCTTTTTTACCCTCCCCACCTGTGTGTTGAACCACTGTTCCACTTCTCTGCGATTTGTCTCCATGATGGACTCATACTGACATCTCATTTCTTGTAGAACCCTGTTTAGGTCAACAGAAGGGGCAGCAGTCACTTCAATGTTGAGTCTGTCCCCAAGCTGGCTCTGTAAGGAGTTGATTTCCTATTGAAAGAAAAAGAATGTGAAGTCACTTATTGGACAGATGACA---CTCT--TGTATTCTTGTTT--GTCTAATAGCAATAATTTAGCTTAATCGTATCTGAAATATAGCTCACAATAAAGGAATAGATGATTTATAGGTGCCATTGAGATGCTATAAAATGACTTAAAGCTATTTCAGATATGAC--TCTATTCAAATACGTGAAACATT--AAAAGGAATTAATTAGCAA-------------GATCAGAGTCGTAAGGAATTTAGACCATTTCCAGGAATGGGTAATGG-TGAAGCAGCAGAGAGGTGGAATTTATAGTAAGAGA-----CCATAGTCTCTAAGACAAAAATATGGGCTTTTGCCAATATGGACTTCGAACAATA--------------------GTGGTAGAAGTCTGTGTAGGGATGCCTACA----AAAAGATGGGACATTTG i canFam3.chr9 C 0 C 0 a score=562234.000000 s hg38.chr17_JH159146v1_alt 112389 157 + 278131 TAAGGACAGAAAAATTGGGTTCCTT-CTTGTAGAAAAGCTGGAGGGGATGTTGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGTGGATTTGAAATACTACCTTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA s panTro4.chr17 66232856 157 - 82630442 TAAGGACAGAAAAATTGGGTTCCTT-CTTGTAGAAAAGCTGGAGGGGATGTTGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGTGGATTTGAAATACTACCTTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24765062 157 - 73212453 TAAGGACAGAAAAATTGGGTTCCTT-CTCGTAGAAAAGCTGGAGGAGATGATGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGTGGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGACTAAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47988076 157 - 81552678 TAAGGACAGAAAAATTGGGTTCCTT-CTTGTGGAAAAGCTGGAGGGGATGATGGAGGCCTTTCTTCCTCTTATGGCTCCAGATATTGTGTTGGAGCCAGTGGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53093039 157 + 80904711 TAAGGACAGAAAAATTGGGATCCTT-CTTGTGGAAAAGCTGGAGGGGATGATGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGCGGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52615907 157 + 80997621 TAAGGACAGAAAAATTGGGATCCTT-CTTGTGGAAAAGCTGGAGGGGATGATGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGCGGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47660711 157 + 74645514 TAAGGACAGAAAAATTGGGATCCTT-CTTGTGGAAAAGCTGGAGGGGATGATGGAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGCGGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9928506 157 - 75148670 TAAGGACAGAAAAATTGGGATCCTT-CTTGTGGAAAAGCTGGAGGGGATGATGCAGGCCTTTCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGCAGATTTGAAATACTACATTGAACCAGTGCTAGTAGCAGTAGGTATTTTCAGGGCTAAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112800631 157 + 159171411 TAAGGACAGAAAAATTGGGTTCCTT-ATTGTGGAAGAGCTGGAGGGGATGATGGAAGACTTGCTTCCCCTTATGGCTCCAGATATTGTGTTGGAGCCAGTGGATTTGAAATAATGCATTGAACCAGTGGTAGTAGCAGTAGGTATTTTCAGGGCTAAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39348892 136 - 61074082 TGAGGACAGGAAAATTGGGTTGTTTCCTTTTGTAAAAGCTGGAGAGGGCAAAGGA------------------GGCTTCAGATATTGTGTTTTGGTGA-TGGATTTGAAACA---CATTGAACCAGTGGTGGTAGCAGTAGGTATTGTCAGGGCTGAA i canFam3.chr9 C 0 I 9 e mm10.chr11 99518825 101 + 122082543 I a score=1179982.000000 s hg38.chr17_JH159146v1_alt 112546 383 + 278131 CCAGAGTAGTACGTAGCAG-----tggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattcccatgtgtcaagggagggacctagtgggaggagattggatcatgggggtggtgtcccccatgctgttcttaggatagtgagtgagttctcacaagatctgatagttttataaagggctcttccccctttgg--tctctctctgtctcctgctgccaagtgagatgtgcctgcttccccttaagccatgattgtaagtttcctgaggcctccccagccatgtggaactgtgactcagttacacttctgtcctttataaattacctactctcagttatttctttatagcagtgtgagaacgaactaataca s panTro4.chr17 66233013 383 - 82630442 CCAGAGTAGTACGTAGCAG-----tggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattcccatgtgtcaagggagggacctagtgggaggtgattggatcatgggggtggtgtcccccatgctgttcttaggatagtgagtgagttctcacaagatctgatagttttataaagggctcttccccctttgg--tctctctctgtctcctgttgccaagtgagatgtgcctgcttccccttaagccatgattgtaagtttcctgaggcctccccagccatgtggaactgtgactcagttacacttctttcctttataaattacctactctcagttatttctttatagcagtgtgagaacaaactaataca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24765219 383 - 73212453 CCAGAGTAGTACGTAGCAG-----tggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattcccacgtgtcaaaggagggacctagtgggaggtgattggatcatgggggtggtgtcccccatgctgttctcaggatagtgagtgagttctcacaagatctgatagttttataaagggctcttccccctttgg--tctctctctgtctcctgctgccaagtgagatgtgcctgcttccccttaagccatgattgtaagtttcctgaggcctccccagccatgtggaactgtgactcaattacacttctttcctttatgaattacctactctcaggtatttctttatagcagtgtgagaacgaaataataca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47988233 389 - 81552678 CCAGAGTAGTACATAGCAGtgatatggtttggctctgtgtccccacccaaatctcatcttgaattgtaattcccataattcccacgtgtcaagggagggaactagtgggaggtgattggatcatgggggtggtgt-ccccatgctgttctcaggacagtgagtgagttcttacaagatctgatagttttataaagggctcttccccctttggtctctctctctgtcttctgctgccaagtgatatgtgcctgcttccccttaagccatgattgtaagtttcctgaggcctccccagccatgtggaactgtggctcaattacacctctttcctttataaattacctactctcaggtatttctttgtagcagtgtgagaacgaactaataca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53093196 386 + 80904711 CCAGAGTAGTATGTAGCAGtgatatggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattcctacctgtcaagggaaggacctagtgggaggtgattggatcatgggggtggtgtcccccatgctgttctcaggatagtgaatgagttctcacaagatctgatggttttacaaagggctcttccccctttgg--tctctctc--tctcctgctgccaagtgagatgtgtctgcttccccttaagccatgattgtaagtttcctgaggcctccccagctatctggaactgtgactcaattacacctctttcctttataaattacctactctcaggtatttctttatagcagtgtgagaacgaactaataca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52616064 386 + 80997621 CCAGAGTAGTATGTAGCAGtgatatggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattcctacctgtcaagggaaggacctagtgggaggtgattggatcatgggggtggtgtcccccatgctgttctcaggatagtgaatgagttctcacaagatctgatggttttacaaagggctcttccccctttgg--tctctctc--tctcctgctgccaagtgagatgtgtctgcttccccttaagccatgattgtaagtttcctgaggcctccccagctatgtggaactgtgactcaattacacctctttcctttataaattacctactctcaggtatttctttatagcagtgtgagaacgaactaataca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47660868 386 + 74645514 CCAGAGTAGTATGtagcagtgatatggtttggctctgtgtccccacccaaatctcatctcgaattgtaattcccataattccTACCTGTCCAGGgaaggacctagtgggaggtgattggatcatggggatggtgtcccccatgctgttctcaggatagtgaatgagttctcacaagatctgatggttttacaaagggctcttccccctttgg--tctctctc--tctcctgctgccaagtgagatgtgcctgcttccccttaagccatgattgtaagttgcctgaggcctccccagctatgtggaactgtgactcaattacacctctttcctttataaattacctactctcaggtatttctttatagcagtgtgagaacgaactaataca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9928663 386 - 75148670 CCAGAGTAGTATGTAGCAGtgatatggtttggctctgtgtccccacccaaatctcatctcgaattgtaattctcataattcctacctgtcaagggaaggacctagtgggaggtgattggatcatgggggtggtgtcccccatgctgttctcaggatagtgaatgagttctcacaagacctgatggttttacaaagggctcttcccactttgg--tctctctc--tctcctgctgccaagtgagatgtgcctgcttccccttaagccatgattgtaagtttcctgaggcctccccagctatgtggaactgtgactcaattacacctctttcctttataaattacctactctcagatatttctttatagcagtgtgagaacgaactaataca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112800788 381 + 159171411 CCAGAATGGTAGGTAACAGtgatatggtttggctccatgtccccacccaaatctcatctcaaatggtaattcccataattcccacatgtcaagggagggacccagtgggaggtggttagatcatgggg-tggtgtcccccatgctgttctcaggataatgagtgagttctcacaagatctgatgatttcataagggtctctttcccctttgg--tctctctc------ctgctgccaagtgaaatatacctgcttccccttaagccatgattgtaagtttcctaaggcctccccagccatgtggaactgtgactcaattatacctctttcttttataaattgcctactcctaggtatttgtttatagcagtgtgagaatgaactaatata i calJac3.chr5 C 0 C 0 e canFam3.chr9 39349028 9 - 61074082 I e mm10.chr11 99518825 101 + 122082543 I a score=9811.000000 s hg38.chr17_JH159146v1_alt 112929 3 + 278131 AGC s panTro4.chr17 66233396 3 - 82630442 AGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24765602 3 - 73212453 AGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47988622 3 - 81552678 AGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53093582 3 + 80904711 AGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52616450 3 + 80997621 AGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47661254 3 + 74645514 agc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9929049 3 - 75148670 AGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112801169 3 + 159171411 AAC i calJac3.chr5 C 0 C 0 s mm10.chr11 99518926 3 + 122082543 AGT i mm10.chr11 I 101 C 0 e canFam3.chr9 39349028 9 - 61074082 I a score=4793937.000000 s hg38.chr17_JH159146v1_alt 112932 1209 + 278131 GGGCACACCCTTTGTCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGACTTAGCTTGTGATTACTCTATTGGTCTTTGTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCTAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGACTCTACCAGCTGGCGTAGAGACACCTCAGCTTCGTATCTTTAAAAACCAGATGGG---AAAAGAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCTCATCTGCATTTTGCTCTGGGCACCTCACTTAGTGTATTTCTATTAGAAGTTTTATTCTCTTTGGAGGTGAAACCATTTGATATAGATCATAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTGTTCTTTGAGATATGGGAATTTATTGTCCTTCCTCTGCCCCTAGTggcaatgcaatgtaagtgaagaaagcactggattagggctcagaaaacatgtgtccaagtttcggttttgacttgtgctagttatgcttacctttgggtgag---taacttagcctcactaag---ccacagatttctcaccttaaagagagtaacaatatattagtcctatctattttactgaactattgtgtaggtaatcaaatgggttcacaagttagaaactataggtactgtatacatgtgagcagttattaATCTTAATCATTCATTGAATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATCATCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCATCTCG-GTCAGACTCAGGGTGAGCTCTGTCATTGATGACGGTGTTGGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCGGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGT----TTGTGTGTGTGTCAAGTAACAGGGGAAGGCTAAGTAGACTTTTTATTAATCTTCATAGCTATGCTCACAAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTAACTAGAAA-CTTTT s panTro4.chr17 66233399 1208 - 82630442 GGGCACACCCTTTGTCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGACTTAGCTTGTGATTACTCTATTGGTCTTTCTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCTAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGACTCTACCAGCTGGCGTAGAGACACCTCAGCTTCATATCTTTAAAAACCAGATGGG---AAAAGAGAG----------------------------------------------------------ACATCTGAA-------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCTCATCTGCATTTTGCTCTGGGCACCTCACTTAGTGTATTTCTATTAGAAGTTTTATTCTCTTTGGAGGTGAAACCATTTGATATAGATCATAACTTAATTATGATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTATCCTTTGAGATATGGGAATTTATTGTCCTTCCTCTGCCCCTAGTggcaatgcaatgtaagtgaagaaagcactggattagggctcagaaaacgtgtgtccaagtttcggttttgacttgtgctagttatgcttacctttgggtgag---taacttagcctcactaag---ccacagatttctcaccttaaagagggtaacaatatattagtcctatctattttactgaactattgtgtaggtaatcaaatgggttcacaagttagaaactataggtactgtatacatgtgagcagttattaATCTTAATCATTCATTGAATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATCATCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCGTCTCG-GTCAGACTCAGGGTGAGCTCTGTCATTGATGACGGTGTTAGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCAAGACCAGTCTGGAATTCTCGGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGGGAAGGCTAAGTAGACTTTTTATTAATCTTCATAGCTATGCTCATGAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTAACTAGAAA-CTTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24765605 1207 - 73212453 GGGCACACCCTTTGTCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGACTTAGCTTGTGATTACTCTCTTGGTCTTTCTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCTAGGTCAGTCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGTAGAGACACCTCAGCTTCATACCTTTAAAAACCAGATGGG---AAAAGAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCTCGTCTGCATTTTGCTCTGGGCACCTCGCTTAGCGTATTTCTATTAGAAGTTTTATTCTCTTTGGAGGTGAAACCATTTGAAATAGATCATAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGAAT-CTACATTGCTGTCCTTTGAGATACGGGAATTTATTGTCCTTCCTCTGCCCCTAGTggcaatgcaatgtaagtgaagaaagcactgcattagggctcagaaaacgtgggtccaagtttcggttttgacttgtactagctatgtttacctttgggtgag---taacttagcctcactaag---ccacagatttctcaccttaaagagagtaacaatatattagccctacctattttactgaactattgtgtaggtaatcaaatgggttcacaagttagaaactataggtactgtatacatgtgagcagttattaATCTTAATCATTCATTGAATTTG--AG-TCTTTTCTGGGCTAGTGCCAACATCATCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCATCTCG-GTCAGACTCAGGGTGAGCTCTGTCATTGATGACGGTGTTGGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGGGAAGGCTAAGTAGACTTTTAATTAATCTTCATAGCTATGCTCACGAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTTCTTAACTAGAAA-CTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47988625 1207 - 81552678 GGGTACACCCTTTTTCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGACTTAGCTTGTGATTACTCTCTCGGTCTTTTTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCTAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGTAGAGACACCTCAGCTTCATACCTTTAAAAACCAGATGGG---AAAAGAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCTCATCTGCATTTTGCTCTGGGCACCTCACTTAGTGTATTTCTATTAGAAGTTTTATTCTCTTTGGAGGTGAAACCATTTGATATAGATCATAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTGTCCTTTGAGATATGGGAATTTATTGTCCTTCCTCTGCCCCTAGTggcaatgcaatgtaagtcaagaaagcactggattagggctcagaaaacgtgggtccaagtttcggttttgacttgtactagttatgcttacctttgggtgag---taac--agcttcactaag---ccacagatttctcaccttaaagagggtaacaatatattagccctacctattttactgaactattgtgtaggtaatcaaatgggttcacaagttagaaactataggtattgtatacatgtgagcagttattaATCTTAATCATTCATTGAAGTTGAAAG-TCTGTTCTGGGCTTGTGCCAACATCATCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCATCTCG-GTCAGACTCAGGGTGAGCTCTGTCATTGATGACGGTGTTGGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGGGAAGGCTGAGTAGACTTTTTATTAATCTTCATAGCTATGCTCACAAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTCATTTTCCT-AAAAGATCAGCAAAAAGTACTTAACTAGAAA-CTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53093585 1208 + 80904711 GGGGACACCCTTTATCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGGCTTAGCTTGTGATTACTCTCCTGGTCTTTCTCTCACCTCTTTATGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCCAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGGAGAGACACCTCAGCTTCATACCTTAAAAAACCAGATGGG---AAAACAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCCCATCTGCATTTTTCTCTGGGCACCTCACTTAGTGTATTTCTATTAAAAGTTTTATTCTCTTTAGAGGTGAAACCATTTGATATAGATCATAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTGTCCTTTGAGATATGGGAATGTATTGTCCTTCCTCTGCCCCTAGTggcaatgcagtgtaagtgaagaaagcactggattagggctcagaaaacgtgggtccaagttttggctctgacttgtgctagttatgcttacctttgggtgag---taacttagcctcactaag---ccacagatttctcaccttaaagagggtaacaatatattagccctacctattttactgaactgttgtgtaggtaatcagatgggttcacaagttcaaaactataggtactgtatacatgtgagcagttattaATCTTAGTCATTCATTGTATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATGGTCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCACCTCG-GTCAGACTCAAGGTGAGCTCTGTCATCGATGATGGTGTTGTGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGAAAAGGCTAAATAGAC-TAAAAGTAATCTTCATAGCTATGCTCATGAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTACCTAGAAA-CTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52616453 1208 + 80997621 GGGGACACCCTTTATCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGGCTTAGCTTGTGATTACTCTCCTGGTCTTTCTCTCACCTCTTTATGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCCAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGGAGAGACACCTCAGCTTCATACCTTAAAAAACCAGATGGG---AAAACAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCCCATCTGCATTTTTCTCTGGGCACCTCACTTAGTGTATTTCTATTAAAAGTTTTATTCTCTTTAGAGGTGAAACCATTTGATATAGATCATAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTGTCCTTTGAGATATGGGAATGTATTGTCCTTCCTCTGCCCCTAGTggcaatgcagtgtaagtgaagaaagcactggattagggctcagaaaacgtgggtccaagttttggctctgacttgtgctagttatgcttacctttgggtgag---taacttagcctcactaag---ccacagatttctcaccttaaagagggtaacaatatattagccctacctattttactgaactgttgtgtaggtaatcagatgggttcacaagttcaaaactataggtactgtatacatgtgagcagttattaATCTTAGTCATTCATTGTATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATGGTCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCACCTCG-GTCAGACTCAAGGTGAGCTCTGTCATCGATGATGGTGTTGTGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGAAAAGGCTAAATAGAC-TAAAAGTAATCTTCATAGCTATGCTCATGAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTACCTAGAAA-CTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47661257 1208 + 74645514 GGGGACACCCTTTATCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGGCTTAGCTTGTGATTACTCTCCTGGTCTTTCTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCCAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGGAGAGACACCTCAGCTTCATACCTTAGAAAACCAGATGGG---AAAACAGAG----------------------------------------------------------TCATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACGCCCATCTGCATTTTTCTCTGGGCACCTCACTTAGTGTATTTCTATTAAAAGTTTTATTCTCTTTAGAGGTGAAACCATTTGATATAGATCGTAACTTAATTATTATTCCCAAATTAGTTTGCTAGGGGGAT-CTACATTGCTGTCCTTTGAGATATGGGAATGTATTGTCCTTCCTCTGCCCCTAGTGGCAATGCAGTGTAAGTGAAGAAAGCACTGGATTAGGGCTCAGAAAACGTGGGTCCAAGTTTTGGCTCTGACTTGTGCTAGTTATGCTTACCTTTGGGTGAG---TAACTTAGCCTCACTAAG---CCACAGATTTCTCACCTTAAAGAGGGTAACAATATATTAGCCCTACCTATTTTACTGAACTGTTGTGTAGGTAATCAGATGGGTTCACAAGTTCAAAACTATAGGTACTGTATACATGTGAGCAGTTATTaatcttattcattcattatattTGAAAG-TCTTTTCTGGGCTTGTGCCAACATGGTCTGGGGCAAGAGGGTTAGTAGACATGGGGACAGTTTTGTTGAGGGCATCTCG-GTCAGACTCAGGGTGAGCTCTGTCATCGATGATGGTGTTGTGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTGAGAACCAAGGGGC----TTGTGTGTGTGTCAAGTAACAGGAAAAGGCTAAATAGAC-TAAAAGTAATCTTCATAGCTATGCTCATGAAGCTT--GGAAAACTTCAGAAAGTCAGATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTACCTAGaaa-ctttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9929052 1211 - 75148670 GGGGACACCCTTTATCAGGTGCAACTCAAAGGAACTGATGCTACTTTTAGGGGCTTAGCTTGTGATTACTCTCCTGGTCTTTCTCTCACCTCTTTGTGGTTGTTCTTGAGGCAAATGAGCTCCTCTTTCAGAGACTGGACTTGTGCCTCCAGGTCGGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCTACCAGCTGGCGGAGAGACACCTCAGCCTCATACCTTAGAAAACCAGATGGG---AAAACAGAG----------------------------------------------------------ACATCTGAAA------------------------------------------------------GGAGATGATGCAAACCAAGCCAAGCAGAACTCCCATCTGCATTTTTCTCTGGGCACCTCACTTAGTGTATTTCTATTAAAAGTTTTATTCTCTTTAGAGGTGAAACCATTTGATATAGATCATAACTTAATTATTATTCCCAAATTAGTTCGCTAGGGGGAT-CTACATTGCTGTCCTTTGAGATATGGGAATGTATTGTCCTTCCTCTGCCCCTAGTggcaatgcaatgtaagtgaagaaagcactggattagggctcagaaaacgtgggtccaagttttggctctgacttgtgctagttatgcttacctttgggtgag---taacttagcctcactaagccaccacagatttctcaccttaaagagggtaacaatatattagccctacctattttactgaactgttgtgtaggtaatcagatgggttcacaagtttgaaactataggtactgtatacatgtgagcagttattaATCTTAGTCATTCATTGAATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATGGTCTGGGGCAAGAGGGTTAGTAGACATGGGGACAATTTTGTTGAGGGCATCTCG-GTCAGACTCAGGGTGAGCTCTGTCATCGATGATGGTGTTGGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGTCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGTACACACAAATGAAGCAAACACCAAGATTTCCTTCTTTAAGAACCAAGGAGC----TTCTGTGTGTGTCAAGTAACAGGGAAAGGCTAAATAGAC-TAAAAGTAATCTTCATAGCTATGCTCATGAAGCTT--GGAAAACTTCAGAAAGTCAAATTTCCTGTTATTTTCCT-AAAAGATCAGCAAAAAGTACTTACCTAGAAA-CTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112801172 1204 + 159171411 AGGGACACCCTTTGTCAGGTGCAACTCAAAGGAACTGATGCTACTCTTAGGGGCTTAGCTTGTGATTACTCTCTTGGTTCTTTTCTCACCTCTTCGTGGTTGTTCTTGAGGCAAAGGAGCTCCTCCTTCCGAGACTGGACTTGTACCTCCAGGTCTGCCTTGCCCAGGGTCAGCACATTCAGGATCTGCTTGAGGCCATTGGCATCTGCCTCCGCCAGCTGGCGTAGAGACGCCTCAGCTTCATACCTTTAAAAACCAGACAGG---AAAAGAGAG----------------------------------------------------------ATATCTGAAA------------------------------------------------------GAAGATGATGCAAACCAAGCCAAGCAGAACTCCTGTCTATATTTTACTCTGGGCATCTCACTTGGTGTATTTCTATTGAAGGTTTTATTCTCTTTAGAAGTGAAACCATTTGATAAAGATCATAACTTAATTATTATTCCCAAAATAGTTTGCTAGGGGGAT-CTGCATTGCTGCCCTTTGAGATGTGGGAATTTATTGTTCTTCCCCTGCCCCTAGTggcaatgcaatgtaagtgaagaaagcagtggattagagctcggaaaacttgggtccaaattttggctctgactcgtaccagttgtgcttacctttgggtaat---caacttagcctcactaag---ccacagctttctcaccttaaaggggacaacag---------cctattcattttactaaactattgtgtaggtaatcagatgggttcacaagttagaaactataggtaatgtacacatgtgagtagttattaATCTTAATCAATCATTGAATTTGAAAG-TCTTTTCTGGGCTTGTGCCAACATGGGCCGGGGCAAGAGGGTTAGTAAATGGAGGGATAATTTTGTTGAGGGCATGTTA-GTCAGACTCAGGGTGAGCTCTGTCATGGATGACAGAGTTGGGTGGGCTTACTTGGCTCTCAAGTCATCTGCAGCCAGTTTGGTGTTGTCAATTTGCGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAAATCGTACACACAAATGAAACACATACCAGGATCTCCTTCTTTGAGAACCAAGGTGCATGTGTGTGTGTGTGTGAAGTAACAGGGGAAGATGAAGTAGACTTTTGATTAATCTTCATAGTTAGGCTCAGGAAACTT--GGAAAGCTTTGGAAAGTCAAATTTTCTGTTATTTTCCT-AAAAGACCAGTAAAGAGTACTTAACTAGAAA-CTTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99518929 1177 + 122082543 GGGAATACACTTTGCTATGTACAACTCAAAGGAACCAATGCTAATTTTCGGGGTTCAGCCTGTACTGATTCT--TGGTCTCTTTCTTACTTCCTCATGGTTCGTTTTGAGGCACAGAAGTTCCTCCGTCAGAGACTGGACTCGGGCCTCCAGGTCAGCCTTGCTCAGAGTGAGTGCATCCAGGATCTGCTTCAGGCCATTGGCATCGGCTTCCACAAGCTGGCGCAGGGACAACTCAGCTTCATAGCTTTAAATGCCAGAAAGGGGAAAGAACAAG----------------------------------------------------------CCATTAGAAT------------------------------------------------------GTAGATG-CACACGGTGGGCTCGGCAGAACTTCCCGCTTCTTTGTCCTCTGGGTCTCTCTCT----GTGTTTCTATGGAAGACGTTATTCTTTGTAGCAGTGAAACTGT---------ATCATGACTTGGTTGTTAGGCTTAAGTTAGTCCACCTGCCCGATGCCACCTTAGTGTCTTTTGAGATGAAGGAATTCATTTTCCCATCTTTGCTCCTAAAGGCAACA-AGTGTAAG----AAAACCATTGGGTTTGGGCTCAGGAAGTGTGGGTCTGCATTTTGGCTCTCACTTGTATCACACACACACACTTTAGTGTAAGGTTTTTTTTTTTCTCATTTTA---TCAAGGTTTTCTGGCCTGGAGCAAGGTTACAAGACATTGACCCTACTTATCTCACTA---------GGGGGCAATCATATGAGTCCTTTTGTC--ATCCCGGAGGTGCCGTGTGCAGGTTAG-GGCTATTAATCTTAATCA--CATTGAATCTGAAGG-TCTTTTCTGGGTTACTTTTGATAGGCTATGGAGTGGGAGGCTTGGTGCATGTGGGGACAGTCTCCCTGGGAATATTTAA-ATCAGACTCA-GATGAAGTCTATCACCAGTGACAGTGCTGGGCAGGCTTACTTGGCTCTCAAGTCATCTGCAGCCAGTTTGGTGTTGTCAATTTGTGAGACCAGTCTGGAATTTTCAGCCTTGGTACACAAGATCTAGAATTAAGAGATTGCACACACAAATGAGACAAACACCAGGATCCCGTACTTTAAGAACCAAAGGAC-------CGTGTGTTCTAGTTAGCAG---AAGACTGGTTAGAATTTTCCTGACTCTTCAGAGCCATGCTTAAGAAACATGGGGGAAACATTGGACAATCAGAGTTCTTGTTAGTTTTCT-AAGAGATTATCAAAACACATGCAAATAAAAATCATTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39349037 1301 - 61074082 GGAGACACCTTTTGCCAAATTCAGCCCAAAGGAATTGTTGCTATTTTTTAGAG----GCTTGTAATGACTCTCTTGGT---TCTCTAACCTCTTCATGCTTGTTTTTGAGGAAGAGGAGCTCCTCCCTCAGAGACTGGACTTGTGCCTCCAGGTCAGCCTTGGCCAGGGTCAGTGCATTCAGAATCTGCTGTAGGCCTTTGGCATCAGCCTCCACCAGCTGGCGTACAGACACCTCAGCTTCATACCTTTAAAAATGAGACATA---AaaagaaggcattaaaatgtaaatggtgcactgggtgttatatgcaactgatgaattgttgaacactccatctgaaactaacgatgtactatatgttggctaattgaatttaaattaaaCAAAACAAAAATATAGATGGTGTAAATCAAGCCAAGCAGAACTCCTTTCCACATTTT-CTTTTATTTTCTCATTTATTATATTTCTGTTGTGGGTTTTATTCTCTTTAGATGTGAGATTATTTGATAAAAATAACCACTTAATTTTTATTCCTTAATCAGTTTGCCAGCATGAGGCCACATTGCTGGTCTTTGAGATAAGGGAATTTATGCTCTTTCTCCTGCCCTCAAaagcaatgcagtggaagtggaaagagcagtggattaggagttagaaaatttgcatccaagttttagctgtgtcttgtcctagttgta--tgtcttcggata-----tagctgaatcccattaaa---ccagagttttctcaccttaaacaaggtaactacagattggccctacctattttcctgaattactgtgcaggtaatcagatgggttcgtatgttagaaactacaaggattatttacatgtgagtggtta-tAAGCTTTATCATTTATCAAATATGAAAGTTTTTTTCTGGACTAGTGCTAATATGGTATGGAGCAGGAGGTTTAGCAGATTTAGGGATAATCTTCATGGCAGTGTGCAGAGTCAGAGGCAGGGTGAAATCTGTTGTGAATGCCAGTGCTGGGTGGGCTTACTTGGCTCTCAAGTCATCAGCAGCCAGTTTGGTGTTGTCAATTTGTGAGACCAGTCTGGAATTCTCAGCCTTGGTACACAAGATCTAGAATTAAGAAATTGTACACACAAATGAGACAAACACCAGGATATCCTTCTTTAAAAACCAAGG-GC----TTGTGTGTGTTGCAGTTTACAGGGAAGGGCCAGTTAGGC----------TTTTCATAGCTATGCTTAGGAAGCTT--GGGAAGCTTTGGAAAGTCAGAGTTTTTGTTATTTTCCTAAAAAAATCAGCAAAAGCCACTCCAATAAAAA-CTTCT i canFam3.chr9 I 9 C 0 a score=18549.000000 s hg38.chr17_JH159146v1_alt 114141 11 + 278131 AAGTA-TTT------TTT s panTro4.chr17 66234607 11 - 82630442 AAGTA-TTT------TTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24766812 12 - 73212453 AAGTATTTT------TTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47989832 10 - 81552678 AAGTA-TTT------TT- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53094793 11 + 80904711 AAGTA-TTT------TTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52617661 17 + 80997621 AAGTA-tttttgttgttg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47662465 17 + 74645514 aagta-tttttgttgttg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9930263 11 - 75148670 AAGTA-TTT------TTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112802376 11 + 159171411 AAGTA-TTT------TTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99520106 11 + 122082543 CTGTA-TGT------TTT i mm10.chr11 C 0 I 569 e canFam3.chr9 39350338 0 - 61074082 C a score=404908.000000 s hg38.chr17_JH159146v1_alt 114152 141 + 278131 TTGTTGTTGTTGT--TAAAAAATCCAggctgagagcagtggctcacccatgtaatatcagcacttgggaggctgaggcgggcggatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccctgtctctact s panTro4.chr17 66234618 143 - 82630442 TTGTTGTTGTTAAAATATAAAATCCAggctgagcgcagtggctcacccatgtaatatcagcacttgggaggctgaggcgggcggatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccctgtctctact i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24766824 143 - 73212453 TTGTTGTTGTTAAAATATAAAATCCAggccaagcgcggtggctcacccctgtaatatcagcatttgggaggctgaggcgggcggatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccctgtctctact i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47989842 140 - 81552678 ---TTGTTGTTAAAATATAAAATCCAggccgagcgcagtggctcacccctgtaatatcagcacttgggaggctgaggggggcggatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccctgtctctact i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53094804 143 + 80904711 TTGTTGTTGTCAAAATATAAAATCCAggccgagcacagtggctcacccctgtaatatcagcagttgggaggctgaggtgggcagatcatgaggtcaagagatcgagaccatcctggtcaacatggtgaaactctatctctact i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52617678 143 + 80997621 ttgttgttgttAAAATATAAAATCCAggccgagcacagtggctcacccctgtaatatcagcacttgggaggctgaggcgggcagatcatgaggtcaagagatcgagaccatcctggtcaacatggtgaaactctatctctact i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47662482 143 + 74645514 tggttgttgttaaaatataaaatccaggccgagcacagtggctcacccctgtaatatcagcacttgggaggctgaggcgggcagatcatgaggtcaagagatcgagaccatcctggtcaacatggtgaaactctatctctact i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9930274 143 - 75148670 TTGTTGTTGTTAAAATATAAAATCCAggccgagcacagtggctcacccctataatatcagcacttgggaggctgaggcgggcggatcatgaggtcaagagatcgagaccatcctggtcaacatggtgaaactctatctctact i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112802387 130 + 159171411 TTGTTGTTGTTACAATATAAAATCCAgaccaggtgcagcggctcatgcctgtaatcccaacactttgg-----gaggggggtggatcac--------gagatcaaaaccatcctgaccaacatggtgaaaccccgtctctact i calJac3.chr5 C 0 C 0 e canFam3.chr9 39350338 0 - 61074082 C e mm10.chr11 99520117 569 + 122082543 I a score=14441.000000 s hg38.chr17_JH159146v1_alt 114293 6 + 278131 aaaaaa s panTro4.chr17 66234761 6 - 82630442 aaaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24766967 6 - 73212453 aaaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47989982 6 - 81552678 aaaaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53094947 6 + 80904711 aaaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52617821 6 + 80997621 aaaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47662625 6 + 74645514 aaaaaa i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112802517 5 + 159171411 -aaaaa i calJac3.chr5 C 0 C 0 e canFam3.chr9 39350338 0 - 61074082 C e mm10.chr11 99520117 569 + 122082543 I e chlSab2.chr16 9930417 0 - 75148670 C a score=9690.000000 s hg38.chr17_JH159146v1_alt 114299 7 + 278131 tacaaaa s panTro4.chr17 66234767 7 - 82630442 tacaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24766973 7 - 73212453 tacaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47989988 7 - 81552678 tacaaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53094953 7 + 80904711 tacaaaa i rheMac3.chr16 C 0 C 0 s calJac3.chr5 112802522 7 + 159171411 tacaaaa i calJac3.chr5 C 0 C 0 e canFam3.chr9 39350338 0 - 61074082 C e mm10.chr11 99520117 569 + 122082543 I e chlSab2.chr16 9930417 0 - 75148670 C e papAnu2.chr16 47662631 0 + 74645514 C e macFas5.chr16 52617827 0 + 80997621 C a score=4206.000000 s hg38.chr17_JH159146v1_alt 114306 5 + 278131 attgg s panTro4.chr17 66234774 5 - 82630442 attgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24766980 5 - 73212453 attgg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47989995 5 - 81552678 attgg i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112802529 5 + 159171411 attag i calJac3.chr5 C 0 C 0 e canFam3.chr9 39350338 0 - 61074082 C e mm10.chr11 99520117 569 + 122082543 I e chlSab2.chr16 9930417 0 - 75148670 C e papAnu2.chr16 47662631 0 + 74645514 C e macFas5.chr16 52617827 0 + 80997621 C e rheMac3.chr16 53094960 0 + 80904711 C a score=145303.000000 s hg38.chr17_JH159146v1_alt 114311 296 + 278131 ccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtagatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatataaaaaaaaaaaaaa------ttagctgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaacccaggaagcggagctagcagtgagccgagatcgcgccactgcactgcagcctgggagacagagcgagactccgtctcaaaaaaaaa s panTro4.chr17 66234779 302 - 82630442 ccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaaaaaaaaaaaaaaaaaaaaaaaaattagccgggcgtggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggaagcggagctagcagtgagccgagatcgcgccactgtactgcagcctgggagacagagcgagactccgtctcaaaaaaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24766985 291 - 73212453 ctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcaagaccatcctggctgacacagtgaaaccccgtctctactaaaaatattaaaaaaaaaa---------ttagccgggtgtggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgggaggcggagctagcagtgagccaagattgcgccactgcactgcagcctgggaaacagagcaagatt--gtctcaaaaaaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47990000 296 - 81552678 ccaggcacggtggctcatgcctgtaatcccagcactttaggaggctgaagcgggtgcatcacaaggtcgggagatcaagaccatcctggctaacacggtgaaaccccatttctactaaaaatatatatataaaaaaaa------ttagccgggcgtggtggcgggcgcctatagtcccagctactcgggaggctgaggtgggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgtgccactgcactccagcctgggaaacagagcgagactccatctcaaaaaaaaa i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 39350338 0 - 61074082 C e mm10.chr11 99520117 569 + 122082543 I e calJac3.chr5 112802534 0 + 159171411 C e chlSab2.chr16 9930417 0 - 75148670 C e papAnu2.chr16 47662631 0 + 74645514 C e macFas5.chr16 52617827 0 + 80997621 C e rheMac3.chr16 53094960 0 + 80904711 C a score=5460.000000 s hg38.chr17_JH159146v1_alt 114607 6 + 278131 aaaaaa s panTro4.chr17 66235081 6 - 82630442 aaaaaa i panTro4.chr17 C 0 I 1 s ponAbe2.chr17 24767276 6 - 73212453 aaaaaa i ponAbe2.chr17 C 0 I 1 s nomLeu3.chr19 47990296 6 - 81552678 aaaaaa i nomLeu3.chr19 C 0 C 0 s chlSab2.chr16 9930417 6 - 75148670 aaaaaa i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39350338 0 - 61074082 C e mm10.chr11 99520117 569 + 122082543 I e calJac3.chr5 112802534 0 + 159171411 C e papAnu2.chr16 47662631 0 + 74645514 C e macFas5.chr16 52617827 0 + 80997621 C e rheMac3.chr16 53094960 0 + 80904711 C a score=15477.000000 s hg38.chr17_JH159146v1_alt 114613 8 + 278131 tacaaaaa s panTro4.chr17 66235088 8 - 82630442 tacaaaaa i panTro4.chr17 I 1 C 0 s ponAbe2.chr17 24767283 8 - 73212453 tacaaaaa i ponAbe2.chr17 I 1 C 0 s nomLeu3.chr19 47990302 8 - 81552678 tacaaaaa i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52617827 8 + 80997621 tacaaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47662631 8 + 74645514 tacaaaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9930423 8 - 75148670 tacaaaaa i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39350338 0 - 61074082 C e mm10.chr11 99520117 569 + 122082543 I e calJac3.chr5 112802534 0 + 159171411 C e rheMac3.chr16 53094960 0 + 80904711 C a score=10192.000000 s hg38.chr17_JH159146v1_alt 114621 4 + 278131 ttat s panTro4.chr17 66235096 4 - 82630442 ttat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24767291 4 - 73212453 ttat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47990310 4 - 81552678 ttat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53094960 4 + 80904711 ttat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52617835 4 + 80997621 ttat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47662639 4 + 74645514 ttat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9930431 4 - 75148670 ttat i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39350338 0 - 61074082 C e mm10.chr11 99520117 569 + 122082543 I e calJac3.chr5 112802534 0 + 159171411 C a score=454757.000000 s hg38.chr17_JH159146v1_alt 114625 157 + 278131 ctgggtgtggtggtgcgtgcctgtagacccagctactagagaggcagaggagggagaatcgcttgaacctgggagctggaggttgcagtgagcagagatcgcgccattgcactccagcctggtgacagagtgagactccatctcaataaata----cataa s panTro4.chr17 66235100 157 - 82630442 ctaggtgtggtggtgcgtgactgtagacccagctactcgagaggcagaggagggagaatcgcttgaacccgggagctggaggttgcagcgagcagagatcgcgccattgcactccagcctggtgacagagtgagactccatctcaataaata----cataa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24767295 157 - 73212453 ctgggtgtggtggtgcacacctgtagacccagctactcaagaggctgaggagggtgaatcccttgaacctgggagccagaggttgcagtgagcagagatcgcgccattgcactccagcctggtgacagagtgagacttcatctcaataaata----aataa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47990314 157 - 81552678 ctgggtgtggtggcgtgtgcctgtagactcagctacttgagaggctgaggagggagaatcgcttgaacccgggagctggaggttgcagtgagcagagatcgtgccattgcactagagcctggtgacagagtgagactccatctcaaaaaata----aataa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53094964 157 + 80904711 ctgggtgtggtggtgcgtgcctgtagacccagctacttgagaggctgaggagggagaatcacttgaacctgggagctggaggttgcagtgagcagagattgcaccattgcactctagcctggtgacagagtgagactccatctcaataaata----aatga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52617839 157 + 80997621 ctgggtgtggtggtgcgtgcctgtagacccagctacttgagaggctgaggagggagaatcacttgaacctgggagctggaggttgcagtgagcagagattgcaccattgcactctagcctggtgacagagtgagactccatctcaataaata----aatga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47662643 161 + 74645514 ctgggtgtggtggtgcgtgcctgtagacccagctacttgggaggctgaggagggagaatcacttgaacctgggagctagaggttgcagtgagcagagattgcaccattgcactccagcctggtgacagagtgagactccatctcaataaataaatgaatga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9930435 161 - 75148670 ctgggtgtggtggtgcgtgcctgtagacccagctacttgagaggctgaggagggagagtcacttgaacctgggagctggaggttgcagtgagcagagattgcaccattgcactccagcctggtgacagagtgagactccatctcaataaataaatgaatga i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112802534 154 + 159171411 ctgggcgtggtagcacatgcttgtggtcccagctactcaggaggctgaggcaagagaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcgcgccattgcactccagtctgacagcagagtgagacttcatctcaaaaa-------aataa i calJac3.chr5 C 0 C 0 e canFam3.chr9 39350338 0 - 61074082 C e mm10.chr11 99520117 569 + 122082543 I a score=1534804.000000 s hg38.chr17_JH159146v1_alt 114782 471 + 278131 ataaata-aataaa-------------aaataa--aataaaATCCATCC-------TAAATTTATATAAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccaatattttcccagaatctagaacaatgtttggcccaatgttgttgctgctcagtaaacatttgttgaatgaataaaACTGAATAAATCCAG-ATATGTAGTAG---CAGAATACGTCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AAGCAATGTGGAGATGATAACATAAGCATAAAAGGAGAAAAAGGTGGTGATGGTTGAAAAATGGATAAAAACTAAATTGCTTAGAAACTCATTAAAGCAAAATTTATTTTCTCTGATCTCTGTTTCCCTATTTTTATTTAAAAAATGGCAACAA-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAGTCATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA s panTro4.chr17 66235257 526 - 82630442 ataaata-aatata-------------aaataa--aATAAAATCCATCC-------TAAATTTATATAAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccagtattttcccagaatctagaacaatgtttggcccaatgttgttgctgctcagtaaacatttattgaatgaataaaACTGAATAAATCCAG-ATATGTAGTAG---CAGAATACGTCTGTGCATAACAA--ACTTGGATTTGGTG-TAGAAACAAACC----AAGCAATGTGGAGATGATAACATAAGCATAAAAAGAGAAAAAGGTGGTGATGGTTGAAAAATGGATAAAAACTAAATTGCTTAGAAACTCATTAAAGCAAAATTTATTTTCTCTGATCTCTGTTTCCCTATTTTTATTTAAAAAATGGCAACAATGATTTTAGCTGtaaaaaaaataaataaaaaataaaaaataaaaaatGGCAACAACTTGCTGTTAACA-TCTTTTGGTCCTGAGTCATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24767452 485 - 73212453 ataaata-aataaacaaataaataaataaataa--aataaaATCCATCC-------TAAATTTATATAAATACCATTGATccactagaatgtcaactccatgaggccagggactttttaaaggtcaccaatattttccaagaatctagaacaatgtttggctcaatgttgttgctgctcagtaaacatttgttgaagaaataaaACTGAATAAATCCAG-ATGTGTAGTAG---CAGAATATGTCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAATAAACC----AAGCAATGTGGAGATGATAACATAAGCATAAAAGGAGAAAAAGTTGGTGATGGTTGAAAAATGGATAAAAACTAAATTGTTTAGAAACTCATTAAAACAAAATTTATTTTCCCCGATCTCTGTTTCCCTATTTTTATTTAAAAAATGATAACAA-------------------------------------------------------CTTGCTGTTAACA-ACTTTTGGTCCTGAGTTATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47990471 471 - 81552678 ataaatataaaata-------------aaataa--aataaaatCCATCC-------TAAATTTATATAAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccaatattttcccagaatctagaacaatgtttggcccaatgttgttgctgctcagtaaacatttgttgaatgaataaaACTGAATAAATCCAG-ATGTGTAGTAG---CAGAATACATCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AAGCAATGTGGAGATGATAACATAAGCATAAAAGGAGAAAAAGGTGGTGATGGTTGAAAAATGGATAAAAACTAAATTGTTTAG-AACTCAGTGAAGCAAAATTTATTTTCTCTGATCTCTGTCTCCCTATTTTTACTTAAAAAATGGCAACAA-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAGTTATCTAGTTATA--ATGATACAGTGTATTTCTGGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53095121 479 + 80904711 ataaata-aataaa-------------taaaaat-aaaaaaaTCCATTTATATGAATGGATTTATATGAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccaatattttcccagaatctagaataatgtttggctcaatattgttactgctcagtaaacatctgttgaatgaataaaACTGAATAAATCCAG-ATGTGTAGTAG---CAGAATATATCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AATCAATGTGGAGATGATAACATAAACATAAAAGGAGAAAAAGGTGGTGATGGTTGCAAAATGGATAAAAACTAAACTGTTCAGAAACTCATTAAAACAAAATTTATTTTCTCTGATCTCTGTTTCCCTATTTTTATTTAAAAAATGGCAACAA-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAGTTATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52617996 479 + 80997621 ataaata-aataaa-------------taaaAAT-AAAAAAATCCATTTATATGAATGGATTTATATGAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccaatattttcccagaatctagaataatgtttggctcaatattgttactgctcagtaaacatctgttgaatgaataaaACTGAATAAATCCAG-ATGTGTAGTAG---CAGAATATGTCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AATCAATGTGGAGATGATAACATAAACATAAAAGGAGAAAAAGGTGGTGATGGTTGCAAAATGGATAAAAACTAAACTGTTCAGAAACTCATTAAAACAAAATTTATTTTCTCTGATCTCTGTTTCCCTATTTTTATTTAAAAAATGGCAACAA-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAGTTATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47662804 473 + 74645514 ataaata-aataaa-------------taaaaatcaaaaaaatccaTTC-------TAAATTTATATGAATACCA-TGATCCACTAGAATGtcaactccatgagggcagggactttttAAAGGTCACCAATATTTTCCCAGAATCTAGAATAATGTTTGGCTCAATATTGTTACTGCTCAGTaaacatctgttgaatgaataaaactgaataaaTCCAG-ATGTGTAGTAG---CAGAATATGTCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AATCAATGTGGAGATGATAACATAaacataaaaggagaaaaaggtggtgatggttgcaaaatgGATAAAAACTAAACTGTTCAGAAactcattaaaacaaaatttattttctctgatctctgtttccctatttttattttaaaaatggcaacaa-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAGTTATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9930596 473 - 75148670 ataaata-aataaa-------------taaaaattaaaaaaaTCCATTC-------TAAATTTATATGAATACCA-TGATccactagaatgtcaactccatgagggcagggactttttaaaggtcaccaatattttcccagaatctagaataatgtttggctcaatattgttactgctcagtaaacatctgttgaatgaataaaACTGAATAAATCCAG-ACGTGTAGTAG---CAGAATATGTCTGTGCATAACAA--ACTTAGGTTTGGTG-TAGAAACAAACC----AATCAATGTGGAGATGATAACATAAACATAAAAGGAGAAAAAGGTGGTGATGGTTGCAAAATGGATAAAAACTAAACTGTTCAGAAACTCATTAAAACAAAATTTATTTTCTCTGATCTCTGTTTCCCTATTTTTATTTAAAAAATGGCAACAA-------------------------------------------------------CTTGCTGTTAACA-TCTTTTGGTCCTGAATTATCTAGTTATA--ATGGTAGAGTGTATTTCTGGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112802688 469 + 159171411 --aaata-aatcaa--------------aataa--aGTAAAATCCATCC-------TAAATTTATATAAATACCA-TGATctactagaatgtcaacttcatgaaggcagggactttttaaagttcaccaatattttcccagaatctagaacaatgtttggtccattgctgttgctgctcagtaaatatttgtcgaatgaatgaaACTGAATAAATCCAG-ATGTGTAGTAG---CAGAATATCTCTGTGCATGACAA--ACTTAGTTTTGGTG-TAGACACAAACC----AAGCAACGTGGAGATGATAATGCAAGCATAAAAGGAGAAAAAGGTGGCGATGGTTGCAGAATGGATAAAAACTAAACTGTTTAGGAACTCATTAAAACAAAATTTATTTTCTCTGATCTCCATTTTCTTATTTTTATTTTAAAAACGGTAACGA-------------------------------------------------------TTTGCTGTTAACATTTTTTTGGTCCTGAGTTATCTAGTTATA--ATGGTAGAGTATATTTCTGGA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39350338 468 - 61074082 GTATGTG-TATTAC-------------TGTTAAAATATAAAATCTGCAT-------TTGATTT-------------GCATcctctggaatgtaatcgtcatgagggcaggggcttttt--agttcattaatattttcccagagcctagagtaatgtctagtgtgttgtcggtggtgttcagtaaatagtcgttgaacaagtaaaATGGGATAAATCTGGCATGTGCAGTAGCAACAGCACATCACTATGATTAGGAAGGAGATAGGCTTGGTGTTGGAAAAAAACCATTGAAACAATTTGGAGATGATGAAATGAGCATAAAAGGGGGAAAGAGTGGTGATGATTGAAAAATGGATAAAACCTAAACTGTTAAGGGACTTATTAGAGCAAAATGCTCTTTCTCAGATCCTTGTTTTCTTATTTTTGTTAAAGAAATGGCAGCAA-----------------------------------------------------------TAGGTGACA-CATTTTGACACATGTTGACACACTTCTGACATAGCAGAATGTATCCCTGGA i canFam3.chr9 C 0 I 11 e mm10.chr11 99520117 569 + 122082543 I a score=936243.000000 s hg38.chr17_JH159146v1_alt 115253 359 + 278131 GAAAGGAAACACCATGAGACTCttctttttgtttct------------------gatttttaaagacatagtctcacttttgtctgggctggagtgcagtggcaggatcttggctcatggcagcctcaacctcttgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccacgcccatctaatttttttttgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtaaggatggaatttcatcatgttgcccaggatggtctagaactcctgggctcaagtgatctgtctgcctcagcctcccaaagtgttaggattacaggtgtgca-tcactgcgcctgaccAGAAATAC s panTro4.chr17 66235783 357 - 82630442 GAAAGGAAACACCATGAGACTCttctttttgtttct------------------gatttttaaagacagagtctcacttttgtctgggctggagtgcagtggcaggatcttggcttatggcagcctcaacctcttgggctcgagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccatgcccatctaattttttt--gtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtaaggatggaatttcatcatgttgcccaggatggtctagaactcctgggctcaagtgatctgtctgcttcagcctcccaaagtgttaggattacaggtgtgca-tcactgcgcctgaccAGAAATAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24767937 348 - 73212453 GAAAGGAAACACCATGAGACTCttctttttgttttt------------------gatttttaaagacagagtctcgcttttgcccaggctggagtgcggtggcaggaactcagctcatggcagcctcgacctcttgggctcaagtaatcctcccacctcagcctcccaagtagctgggaccacaggcaggtgccaccacgcccatctaattttt----gtgtg-------gtttttttttttttttttctttagagacggagtttcatcatgttgtccaggctggtgtagaactcctgggctcaagtgatctatctgcctcagcctcccaaagtgttaggattacaggtgtgca-tcactgcacctgaccAGAAATAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47990942 334 - 81552678 GAAAGGAAACACCATGAGA--Cttcttttcattttt------------------gatttttaaagacagggtctcgcttttgtctgggctggagtgcagtggcaggatcttggctcatggcagcctcgacctcttgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccatgctcatctaattttttt-----------------------tttgtgtgtgtgtagagatggaatttcatcatgttgcccaggctggtctagaactcctgggctcaagtgatctgtccgcctcagcctcccaaagtgttaggattataggtgtgca-tcactgcgcctgaccAGAAATAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53095600 346 + 80904711 GAAAGGAAACATCATGAGACTCttctttttgttttt------------------gatatttaaagacagagtctcacttttgcctgggttggagtgcagtggcagcatatcagctcatagcagcctcgacctcttgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgcgccaccatgcccatctaatgtgtgt------------ctgtgtgtgtgtgtgtgtgtttgtagaaatggactttcatcatgttg-ccaggctggtctagaactcctgggctcaagtgatctgtctacctcaacctctcaaagtgttaggattacaggtgtgca-tcactgcgcctggtcAGAAATAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52618475 342 + 80997621 GAAAGGAAACATCATGAGACTCttctttttgttttt------------------gatatttaaagacagagtctcatttttgcctgggttggagtgcagtggcagcatctcagctcatagcagcctcgacctcttgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccatgcccatctaatgtg----------------tgtgtatgtgtgtgtgtgtttgtagaaatggactttcatcatgttg-ccaggctggtctagaactcctgggctcaagtgatctgtctacctcaacctctcaaagtgttaggattacaggtgtgca-tcactgcgcctggtcAGAAATAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47663277 340 + 74645514 GAAAGGAAACATCATGAgactcttctttttgttttt------------------gatatttaaagacagagtctcacttttgcctgggttggagtgcagtggcagcatctcagctcatagcagcctcgacctcttgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccatgcccatctaatg------------------tgtgtgtgtgtgtgtgtgtttgtagaaaTGGACTTTcatcatgttg-ccaggctggtctagaactcctgggctcaagtgatctgtctacctcaacctctcaaagtgttaggattacaggtgtgca-tcactgcGCCTGGTCAGAAATAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9931069 341 - 75148670 GAAAGGAAACACCATGAGACTCttctttttgttttt------------------gatttttaaagacagaacctcacttttgcctgggttggagtgcagtggcaggatctcagctcatggcagcctcgacctcctgggctcaagtgatcctcccacctcagcctcccaagtagctgggaccacaggcatgtgccaccatgcccatctaatt------------------tgtgtgtgtgtgtgtgtgtttgtagaaatggagtttcatcatgttgcccaggctggtctagaactcttgggctcgagtgatctgtctacctcaacctcccaaagtgttaggattacaggtgtgca-tcactgcacctggccAGAAATAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112803157 352 + 159171411 GAAAAGAAACACTAACAGATTCTTCTTTTTAtttttatttatttatttattttaatttttttaagacagagtcttgcttttgcccagactgtagtgcagtggcaggatctcagctcatggcagcctcgagttcctatgctcaagtgatcct-ccacctcagcctcccaagtagctagggccacaggcatgcgccaccatgccaatctaatttt----------------tgtat---------tttttttgtagagatggagtttcatcttgtcgcccaggctggtctagaactcctggactcaagcgatctgtctgcctcagcctcccaaattgttaggattacaggtgtgcgcccactacgcctggcTGGAAATAC i calJac3.chr5 C 0 C 0 e canFam3.chr9 39350806 11 - 61074082 I e mm10.chr11 99520117 569 + 122082543 I a score=177862.000000 s hg38.chr17_JH159146v1_alt 115612 47 + 278131 TATCAGACTCTGAATGCTGCCTCAAGATGACAATTTCACTCAAGAAA s panTro4.chr17 66236140 47 - 82630442 TATCAGACTCTGAATGCTGCCTCAAGATGACAATTTCACTCAAGAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24768285 47 - 73212453 TATCAGACTCTGAATGCTGCCTCAAGATGACAATTTCACTCAAGAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47991276 47 - 81552678 TATCAGACTCTGAATGCTGCCTCAAGATGACAATTTCACTCAAGAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53095946 47 + 80904711 TAGCAGACTCTGAATGCTGCCTCAAGATGACAATTTCGCTCAAGAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52618817 47 + 80997621 TAGCAGACTCTGAATGCTGCCTCAAGATGACAATTTCGCTCAAGAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47663617 47 + 74645514 TAGCAGACTCTGAATGCTGCCTCAAGATGACAATTTCGCTCAAGAGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9931410 47 - 75148670 TAGCAGACTCTGAATGCTGCCTCAAGATGACAATTTCGCTCAAGAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112803509 47 + 159171411 TATCAGACTCTGAATGTTGCCTCAAGATGACAGTTTCATTCAAGAGA i calJac3.chr5 C 0 I 2 s canFam3.chr9 39350817 47 - 61074082 TATAAAACTCTGAATATTGCCTCAAGATGATAATTTCATTCAAGATA i canFam3.chr9 I 11 C 0 e mm10.chr11 99520117 569 + 122082543 I a score=6356549.000000 s hg38.chr17_JH159146v1_alt 115659 1622 + 278131 TTTTTCTATTCTTCAAAAAAATTTT--CAGCATCAACTGAACAAAAAATATTAAAGTTTAGCAAATAACTGTTGCTTGGAAACCATTAATTCACAACACGATTAAACAGGTTCTTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAGTAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTACTTTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTGCAGGTAGTTAGCAAGGCGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAAAAACGGGCATTGAAGTTGTTCATTAGGTAGATGGGCTTGCGACAAAAGCGAGGAGTGGGT-TGGCAGCCCTGGTCCCAGGGAATTCTGAGAACGTGGCCAGCTGGTTGACAGTTGTTGACTGTAAGGCCACCAGGATGGCAGCCGTTGTT---AGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTACAGCCCTTGGTGTCCATAGTATGTGTCTGGCTTTAGTTTGTT-CCAGGTCTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACAGAGTCTGAATTCCAAGGCTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTACGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATATCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAACATGTGCATTTAGGCTGTTAGTAAGTTATTACCCATCATAACTACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATACTAAGTTCATTACATTCTTGTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAACTATTAATGTTTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCTGCCCAAATGGTTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTTAGTCTTTTAAAAGTCTTGTTTTAAAGATAATTGCTAGATTTATGTTTTAGCTTTCCataaaatgtaataacataaaataaaatataaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAGACTAGCTCTCTTTTGGTTTTCCAAAGTCCACATTTTATAACATTTTTAGTGCTTGGTGTTTGCTTGTGGTATTACATTAGATAAAAATGTATCACAGTGTTGGTTTATACTGGATGTTTAAATAGGATTCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------TACTCAGCATTTTCTT----------CAGAAAGTTACTTgctgctaatcctttatggaggctctaggggaacatca-ttttcttgccttttccagcttctacaggctgtccacat- s panTro4.chr17 66236187 1623 - 82630442 TTTTTCTATTCTTCAAAAAATTTTT--CAGCATCAACTGAACAAAAAATATTAAAGTTTAGCAAATAACTGTTGCTTGGAAACCATTAATTCACAACACGATTAAACAGGTTCTTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAGTAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTACTTTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTGCAGGTAGTTAGCAAGGCGCTCGTTCAAGATGTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAAAAACGGGCATTGAAGTTGTTCATTAGGTAGACGGGCTTGCGACAAAAGCGAGGAGTGGGT-TGGCAGCCCTGGTCCCAGGGAATTCTGAGAACGTGGCCAGCTGGTTGACAGTTGTTGACTGTAAGGCCACCAGGATGGCAGCCGTTGTT---AGAAGAGATGGTATTAACATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTACAGCCCTTTGTGTCCATAGTATGTGTCTGGCTTTAGTTTGTTTCCAGGTCTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACAGAGTCTGAATTCCAAGGCTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTACGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATATCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTAGTAAGTTATTACCCATCATAACTACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATACTAAGTTCATTACATTCTTGTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCTGCCCAAATGGTTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTTAGTCTTTTAAAAGTCTTGTTTTAAAGATAATTGCTAGATTTATGTTTTAGCTTTCCataaaatgtaataacataaaataaaatataaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAGACTAGCTCTCTTTTGGTTTTCCAAAGTCCACATTTTATAACATTTTTAGTGCTTGGTGTTTGCTTGTGGTATTACATTAGATAAAAATGTATCACAGTGTTGGTTTATACTGGATGTTTAAATAGGATTCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------TACTCAGCATTTTCTT----------CAGAAAGTTACTTgctgctaatcctttatggagactctaggggaacatca-ttttcttgccttttccagcttctacaggctctccacat- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24768332 1613 - 73212453 TTTTTCTATTCTTCAAAAAATTTTT--CAGCATCAATTGAACAAAAAATATTAAAGTTTAGCAAATAACTGTTGCTTGGAAACCATTAATTCACAACACGATTAAACAGGTTCCTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAGTAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTACTCTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGGTGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAGGAACGGGTGTTGAAGTTGTTCATTAGGTAGATGGGCTTGCGACAAAAGCAAGGAGTGGGT-TGGCAGCCCTGGTCCCAGGGAGTTCTGAGAACGTGGCCAGCTGGTTGACAGTTGTTGACTTTAAGGCCACCAGGATGGCAGCGGTTGTT---AGAGGAGATGATACTAGCATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTACAGCCCTTGGTGTCCATAGTATGTGTCTGGCTTTAGTTTGTTTCCAGGTCTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACGGAGTCTGAATTCCAAGGCTCTTGGTGTTTTCCTCTTTGAAGTGCTTATATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATATCAAATCCTGTAGGAACATCTCATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCATAACTACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATACAAAATTCATTACATTCTTGTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCTACCCAAATGGTTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTTAGTCTTTTAAAAGTCTTGTTTTAAAGATAATTGCTAGATTTATGTTTTAGCTTTCCataaaatgtaataatat-----------taaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAGACTGGCTATCTTTTGGTTTTCCAAAGTCCACATTTTATAACATTTTTAGTGCTTGGTGTTTGCTTGTGGTATTACATTAGATAAAAATGTATCACAGTGTTGGTTCATACTGGATGTTTAAATAGGATTCATCGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------TACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTGCTAAtcctttatggaggctctaagggaacatca-ttttctt-ccttttccagcttctagaggctgtccacat- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47991323 1610 - 81552678 TTTTTCTATTCTTCAAAAAATTTTT--CAGCATCAACTGAACAAAAAATATTAAAGTTTAGCAAATAACTGTTGCTTGGAAACCATCAATTCACAACACGATTAAACAGGTTCCTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAGTAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTACTCTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGGCGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAGGAACGGGCGTCGAAGTTATTCATTAGGTAGATGGGCTTGCGACAAAAGCAAGGAGTGGGT-TGGCAGCCCCGGTCCCGGGGAGTTCTGAGAATATAGCCAGCTGGTTGACAGTTGTTGACTTTAAGGCCACCAGGATGGCAGCGGTTGTT---AGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTACAGCCCTTGGCATCCATAGTATGTGTCCAGCTTTAGTTTGTTTCCAGGTCTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACGGAGTCTGAATTCCAAGGCTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGCTTATATCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCATAACTACTACTTGTCTATTGGACCCAGAGCTTCAACTTATGTCTTCAAAAGGAACT---------GTC---------CTA--AGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTACATTCTTGTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAATTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAGTATTTCAGTTTGTTCTGCCCAAATGGTTTCCCCATTTTCAGCGTCAGGACAATGTGAGTATGAATTAAAATGTTAGTCTTTTAAAAGGCTTGTTTTAAAGATAATGGCTAGATTTATGTTTTAGCTTTCCataaaatgtaataacat-----------aaaataaaatatgaaataaaataaaaGCTATGGGGAAAAGGTAGGGTTTGATTGGTAATAAGAAATTTCTTGGAAAAGAGACTGGCTATCTTTTGGTTTTCTAAAGTCCACATTTTATAACATTTTTAGTGCTTGGTGTTCGCTTGTGGTATTACATTAGATAAAAATGTATCACAGTGTTGGTTTTTACTGGATGTTTAAATAGGATTCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------TACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTCTTAAtcctttatggaggctctaggggaacatca-ttctcttaccttttctagcttctagaggctgtccacat- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53095993 1621 + 80904711 TTTTTCTATTCTTCAAAAAATGTTT--CAGCATCAACTGAACAAAAAATATTAAAGCTTAGCAAATAACTGTTGCTTGGAAACCATCAATTCGCAACACGATTAAACAGGTTCCTAGGAATCTTACCTTCTGCTGGAGTTCCTCAATGGTAGTGTAATAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTATTCTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGACGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAGGAATGCAAGATGAAGTTGTTTATTAGGTAGATGGGTTTGCGACAAAAGCAAGGAGTGGGT-TGGCAGCCCTGGTCCCGGGTAGTTCTGAGAGTGTGGCCAGCTGGTTGACAGTTCTTGACTTTAAGGCCACCAGAATGGCAGCAGTTGTT---AGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACTTGGGGTTGAAGGAGAATTGGTTGTTGTGCAGCCCTTGGTATCCATAGTATGTGTCCGGCTTTAGTTGGTTTCCAAGACTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACGGAGCCTGAATTCCAAGACTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATGTCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCATAAATACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTACGTTCTTCTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCGTCCTTC-TTTTCCTTTCTTCTCTAGGAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCTACCCAGATGATTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTCAGTGTTTTAAAAGACTTGTTTTAAAGATAATTGCTAGATTTATGCTTTAGCTTTCCataaaatgtaataacataaaataaaatataaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTT-GAAAAGAAACTGGCTATCTTTTGGTTTTCCGAAGTCCACGTTTTGTAACATTTTTAGTGC-TAATGTTTGCTTGTGGCATTACATTAGATAAAAATTTATCACAGTGTTGGTTTATACTGGATATTTAAATAGGATCCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------CACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTCCTAgtcctttatggaggctctaggggaacatca-ttttcttgccttttccagcttctagaggctgtccacat- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52618864 1622 + 80997621 TTTTTCTATTCTTCAAAAAATGTTT--CAGCATCAACTGAACAAAAAATATTAAAGCTTAGCAAATAACTGTTGCTTGGAAACCATCAATTCGCAACACGATTAAACAGGTTCCTAGGAATCTTACCTTCTGCTGGAGTTCCTCAATGGTAGTGTAATAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTATTCTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGACGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAGGAATGCAAGATGAAGTTGTTTATTAGGTAGATGGGCTTGCGACAAAAGCAAGGAGTGGGT-TGGCAGCCCTGGTCCCGGGTAGTTCTGAGAGTGTGGCCAGCTGGTTGACAGTTCTTGACTTTAAGGCCACCAGAATGGCAGCAGTTGTT---AGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACTTGGGGTTGAAGGAGAATTGGTTGTTGTGCAGCCCTTGGTATCCATAGTATGTGTCCGGCTTTAGTTGGTTTCCAAGACTGTGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACGGAGTCTGAATTCCAAGACTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATGTCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCATAAATACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTACGTTCTTCTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCGTCCTTC-TTTTCCTTTCTTCTCTAGGAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCTACCCAGATGATTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTCAGTGTTTTAAAAGACTTGTTTTAAAGATAATTGCTAGATTTATGCTTTAGCTTTCCataaaatgtaataacataaaataaaatataaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAAACTGGCTATCTTTTGGTTTTCCGAAGTCCACGTTTTGTAACATTTTTAGTGC-TAATGTTTGCTTGTGGCATTACATTAGATAAAAATTTATCACAGTGTTGGTTTATACTGGATATTTAAATAGGATCCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------CACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTCCTAgtcctttatggaggctctaggggaacatca-ttttcttgccttttccagcttctagaggctgtccacat- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47663664 1622 + 74645514 TTTTTCTATTCTTCAAAAAATGTTT--CAGCATCAActgaacaaaaaatattaaagctTAGCAAATAACTGTTGCTTGGAAACCATCAATTCGCAACACGATTAAACAGGTTCCTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAATAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTATTCTCTTCCTGGATTTTAGATTCCAGTTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGACGCTCATTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTGCAGTCATCCAGAGAGGAATGCAAGATGAAGTTGTTTATTAGGTAGATGGGCTTGCGACCAAAGCAAGGAGTGGGT-TGGCAGCCCTGGTCCCGGGTAGTTCTGAGAGTGTGGCCAGCTGGTTGACAGTTCTTGACTTTAAGGCCACCAGAATGGCAGCAGTTGTT---AGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTGCAGCCCTTGGTATCCATAGTATGTGTCCGGCTTTAGTTGGTTTCCAAGACTGTGGTCACCAGGATGAAAAGCTCAAGCCACGTCCACAGAGTCTGAATTCCAAGACTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATATCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCATAAATACTACTTGTCTATTGGACCCAGGGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTACGTTCTTCTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTcgtccttc-ttttcctttcttctctaggAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAGTATTTTAGTTTGTTCTACCCAAATGATTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTCAGTGTTTTAAAAGACTTGTTTTAAAGATAATTGCTAGATTTATGCTTTAGCTTTCCataaaatgtaataacataaaataaaatataaataaaatatgaaataaaataaaagccatggGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAAACTGGCTATCTTTTGGTTTTCCAAAGTCcacattttgtaacatttttagtGC-TAATGTTTGCTTGTGGCATTACATTAGATAAAAATTTATCACAGTGTTGGTTTATACTGGATATTTAAATAGGATCCATTGAAAG---Gggtgtgttttctttctgag-----------------gAATAC--T-------------------------CACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTCCTAGTCCTTtatggaggctctaggggaacatca-ttttcttgccttttccagcttctagaggctgtcCACAT- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9931457 1620 - 75148670 TTTTTCTATTCTTCAAAAAATGTTT--CAGCACCAACTGAACAAAAAATATTAAAGCTTAGCAAATAACTGTTGTTTGGAAACCATCAATTCACAACACGATTAAACAGGGTCCTAGGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGTGTAATAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTGTTCTCTTCCTGGATTTTAGATTCCAATTCAGCATTCTCTCGTTCTAGCATTCGCACCTTTTCCAGGTAGTTAGCAAGACGCTCGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACCATACCAGCTACAGTCATCCAGAGAGGAACGCACGATGAAGTTGTTTATTAGGTAGATGGGTTTGCGACAAAAGCAAGGAGTGGGT-TGGCAGCCCTGGTCCCGGGTAGTTCTGAGAGTGTGGCCAGCTGGTTGACAGTTCTTGACTTTAAGGCCACCAGGATGGCAGCGGTTGTT---CGAAGAGATGGTACTAACATTTGTAATCCTAGAGCAGTTTTGACATGGGGTTGAAGGAGAATTGGTTGTTGTACAGCCCTTGGTATCCATAGTATGTGTCCGGCTTTAGTTGGTTTCCAAGAC--TGGTCACCAGGATGAAAAGCTCAAGCCACCTCCACGGAGTCTGAATTCCAAGACTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCTTCTATGTGGTGTCACA-CAGGTGAGATGTTTTCCTTTCTCAGGTTTATATCAAATCCTGTAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTATTTGTCTCATAAAAATGTGCATTTAAGCTGTTACTAAGTTATTACCCATCATAAATACTACTTGTCTATTGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CTAACAGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTACGTTCTTCTTGACCTCTCCACTTGGCACTGAGCTTAACCAGGAATGAGTTCGTCCTTC-TTTTCCTTTCTTCTCTAGGAAAGGGAAACTATTAATGTCTAATAATTATTGGTAAACTTAGAAATCAGAAGTCAATATTTTAGTTTGTTCCACCCAAATGATTTCCCCATTTTCAGTGTCAGGACAATGTGAGTATGAATTAAAATGTCAGTATTTTAAAAGACTTGTTTTAAAGATAATTGCTAGATTTATGTTTTAGCTTTCCataaaatgtaataatataaaataaaatataaataaaatatgaaataaaataaaaGCCATGGGGAAAAGGTAGGGTTTGATTGCTAATAAGAAATTTCTTGGAAAAGAAACTGGCTATCTTTTGGTTTTCTGAAGTCCACATTTTGTAACATTTTTAGTGC-TAATGTTTGCTTGTGGCATTACATTAGATAAAAATTTATCACAGTGTTGGTTTATACTGGATATTTAAATAGGATCCATTGAAAG---GGGTGTGTTTTCTTTCTGAG-----------------GAATAC--T-------------------------TACTCAGCATTTTCTT----------AAGAAAGTTACTTGTTCCTAGCCctttatggaggctctaggggaacatca-ttttcttgctttttccagcttctagaggctgtccacat- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112803558 1633 + 159171411 TTTTTTTATTCTTCAAAAAAATTTT--TAGCATCAAATAAAC-AAAAATATTAATGTTTAGCAAATAGCTGTTGCTTGGAAACCATCAATTCACAACATGATTAAACA-GTTCCTAGGAATCTTACCTTCTGCTGGAGCTCCTCGATGGTAGTGTAGTAAGACAGGTAATCAGGACATAGAACAGGGAGCTCTTTGTTACTCTCTTCCTGGATTTTAGACTCCAGCTCAGCATTCTCTCGTTCTAGCATCCGCACCTTTTCCATGTAGTTAGCAAGGCGGTTGTTCAAGATTTGCATGGTCTCCTTCTCATTACTGTTGATGCCTTCACTATACCAGCTGCAGTAATCCAGAGAGGAGCGAGCATTGAAGTTGTTTACTAGGTAGATGGGCATGCAACAAGAGCAACGGGTGGGT-TGGCAGCCCTGGTCCTGGAAAATTCTCTGAACGTGGCCAGCTGGATGACGGTTGTTGACTTTAAGACCGCCACATTGGCAGCTGTTGTT---AGCAGAGATGTTACTAACATTTGTAATCCTAGAGCAGCTTTGACATGGGGTTGAAGGAGAATTTGTTGTTGTATGGCCTTTGGTATCCATAGTATGTGTCTGGCTTTAGTTTGTTTCCAAGTCTGTGGTCACCAGGATGAAAAGCTCAAGCCACTTGCGCAGAGTCTAAATTCCAAGGCTCTTGGTGTTTTCCTCTTTGAAGTGCT--TATATAGCCTCTCCTCTATGCGGTGTCACA-CAGGTGGGATGTTTTCCTTTCTCAGGTTTATATCGAATCCCATAGGAACATCTTATTAGTCTGCTTTTTACTTGCTTAAGAAGAGTTACTTGTCCAATAAAAATGTGCATTTAGGCTGTTACTAAGTTATTACCCATCACAACTACTACTTGTCTATAGGACCCAGAGCTTCAAATTATGTCTTCAAAAGGAACT---------GTC---------CAAACAGCATCCATTATTAAGCAGGTGTGATTATATTAAGCTCATTATGTTCCTGTTGACCTCTTCACTTGGCACTGAGCTTAACCAGGGAAGAGTACATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAACTATTAATGTCAAATAATTATTGGTAGACTGAGAAATCAGAAATCAGTATTTTAGTTTGTTGTGCCCAGATGCTTTCCCCATTTTCAGTGTCAGGGCACTGTAAGTATGAATTAAAATGTTAGTCTTTTAAAAGGCTTGTCTTAAAGATAATTGCTTGATTTATGTTTCAGCTTTCCataaaatgtgatgaaat-----------aaaataaaatataaaataaaacaaaaGCCACGGGGAAAAGGTAGGATTTGATTGCTGATAAGAAATTTCTTGGAAAAGAGACTGGCTGTCTTTCAGTTTTCCAAAGCCCACATTT--------------------GTGTTTGCTCGTGGTGTTACCTTAGCTAAAAATTTGT--CAGTGTTGATTTATACTGGATGTTTAAATAGGATCCATCGAAAGAAAGGGTGTGTTTTCTTTCTGAGTAAATATTCCTCAGAAAGAATTC--TTTTATTCTTTATTCTTTCTGAGGAATACTTAGCATTTTCTT----------AAGAAAGTTACTTGTTCCTAAtcctttatagaggctctaggggaacatca-ttttcttgccttttccagcttctagaggctgtccatat- i calJac3.chr5 I 2 C 0 s mm10.chr11 99520686 1493 + 122082543 tctttcttttttt----AAACATAG--CAGCACAGAAGGTTCTAGAATGAATAAAATTAAACAGATAACCATTGTGTGGAGAGCATCCATCCACAGTTTAATTCAGCATCTTGCT-GAGCTCTTACCTTCTGCTGCAGCTCCTCGATGGTGGTGTAGTAGGACAGGTAGTCAGGACACAGGATGGGGAGCGCCTTGCTGCATGCCTCCTGGATTTTATCCTCTAGGTCCGCGTTCTCTCCTTCCAGCATCCGCACCTTTTCCAGATAGTTTGCAAGGCGTTCGTTCAAAATCTGCATGGTCTCCTTCTCATGAGTGTTAATGCCTTCAGTGCACCTGCTGCCATCATCCAGACAAGGATGGAAGCTGTAGGTTCTTATCAAGTAATGAGGGCATCGATAAAGGCAAGGGCTGGAT-CCACAGCCCTGGCCCTGGGGAGTTTGTAGAGCACAGCCAGTTGACT------------------GGCCATCATGACAACAGCTCTTGTTAGAAGAAGAGTTCGTCCTAAAATTTGTATTCCCAGAGCAGTTTTGGGGTGGGGTTGAAGAAGAAATCGTCACTGTAGAGCCCTTGGTATCCATGGTGTGTGTTCAGCTTCACGTTGTCTCTGAGTCTGAGGTCACC---------ACCCGAAGCACCCTCAACCAAGCCCAAATGCCA--GCCTGTGGC-TTTTCTCCTTTGAAGTGCT--TATATAGCCTTCCTTCCAGGTGGTGACACA-GAGGTGGCATGCTTTCCTTTCTCATGTTTATGTCGAATCCCACAGGAACTCCTCATTAATC-----------TGCCCGAGAAGAGTTACTTGTCTCATAAAAATGTGCATTTAGGCGGTTACTAAGTTATTACCCGTCGCAACTGCTACTTGTC-ATCCGGTCCAGAGCTTCGCACTGGGTCTTCAAAAGGAACTCCCGCCACACTC---------TTAACAGCACCCATCATTAAGCAGGTGTGAGGGTGTTTCGACCTTTAAATCCTTGCCGACCTTTCTGGCTGACGTTTAACTTGACCTGGAATGAGTCCAACCTTCTTTTTCCTTTCTTCTCCAGAAAAGGGAAACTAGTAATATCCTGTAATTACCGGAGAACTTAGAAATCAGCATTTTAT-TTTGACTTTGATCTGACTGGCTCATTTCTCCATTTTTACCACTTGGAGATGGTGAATATAGATTAAAATA-------TTTAAACAGAGTTTGACCAATCCAATTGCCGGGATCATGTTTGAGCTTTTC------------------------------------------------------------------TGATAGGATTTGACTGCTAATAGAACATTCCCTGGGAAAGACGCTGATTACTTTCTGATGGCCCACAGTCTATATTTGATAGCATTCATATTGCCCAGTGTTTG--TGTGG---TACATGAACC---------------TGTTGGGCTTGATTTGATGTT---------------GAAAG---GCAGGCATGTTATTTCTGAG-----------------GGAAACAGC-------------------------TTTTCACCTTCTTCTTCTAATTTTTAAAATAAGTTACTTggttttgattcttcatacagcctccaagagagaatgacttttctcacttttcacagcttctagaggtgacccacat- i mm10.chr11 I 569 I 4082 s canFam3.chr9 39350864 1530 - 61074082 TTTTCTTATTCTACAAAATATCTTTTCCAAAATAAAATGAACTAAGTATATTAAGGCTTAGCAAATGTCTATTGCTTGGAGAATATCATGACACAACCTGA-TATACACATTCTTAAGAATCTTACCTTCTGCTGGAGCTCCTCAATGGTAGCGTAGTAGGACATGTAGTCAGGACATACAACACAGAATTCTTTGTTACACTCCTCCAGGATTTTGCATTCCAGTTCAGCATTCTCTTTTTCCAAGGTCCGTACCTTCTCCAGGTAGTTAGCAAGGCGCTCATTCAAGATTTGCATGGTCTCTTTCTCATTACTGTTGATGCCTTCACCACACCAGCCGCAGTCATCCAGAGGTAGACAGGCATTGACGTTGTTTATTAAGCAGATGGGTGTGAAATAAAAACAAGGAGTGGGTCTGGCAGCCC----------------ACAGAACGTGGCCAGTTGGTTGGCGGCTGTTGGCTTCAAGACCACTGTGTTGGCAGTTAGCGTT---AGAAGAAATGGTCTGAAAATTTGTAATCCGAGAGCAGCGTTGCTGTGGCGTTGAACAAGAA---ATCGTTGTACAGCCTTTAGTATCCATAGTGAGCACCCAGTTTTCGTTT------CAGTCTGTGGTCCT---GATGGAAAGCTCAAGCAGCTGTGACTGTGTTTGAATTCCAAGCTTCTTGGTTATTTCCTCTTTGAAGTGCT--TATATAGCCTTTGCTCTAGGTGGAGTCACAGCTGGCAGGATGTTTTCCTTTCTAATGTTTATATCAAATCCCATAGGAACATCTCATTAGTCTGCTTTTTACTTGCCTGAGAAGAGTTACTTGTCTCATAAAAATGTGCATTTAAACTGTTACTAAGTTATTACCCATCACCACTACTGCTTGTC-ATTGGACCCAGAGCTTCACATGAAGTCTTCAAAAGGAACT---------GTCGTCACATTTCTAACAGCATCCATTATTAAGCAGGTGTGAGTATATTAAGTTCATTAAATCCTTGTTGACCTCTCCAACTGGCATTAAGCTTGATCAGGAATGAGTTCATCCTTC-TTTTCCTTTCTTCTCTAGAAAAGGGAAACTATTAATATCTAATAATTATTGGTGAACTTAGAAACCAG-------TGTTTTATTTTGTTCCGCCCAACCGATTTTCCCATTTTCATTGTTCAGACATTG----TATGGGTTAAAATGTTAGTTTTAAGTAAGAATCTTTTTAAATATAGTTGCTAGTTTCCTGTTTCAGTTTGCC------------------------------------------------------------------AGGTAGGGTCTGGTTACTAACACGAAATTTCCTGGGAAAGAGGCTGGTTACCTTTTGGTTTTCTAAAGCCCACATTTTATGACATTTTTAGCACTCAGTGTTTGCTTGTGGAATTACATTAGCTAAAAATGTGTTATGGTGTTGGCTTATATTTATTGTTTAAACATGATCTATTGAAAG---GCATGTGTTTACTTTCTCAG-----------------GAATAC--T-------------------------TTCTCATCATTTTCTT----------AAGAAAGTTATTTGTTTCTGAtcctttatggaggttctaggagagaataa-tttccttgccttttgcagcttctagaggctgtttatgct i canFam3.chr9 C 0 C 0 a score=69522.000000 s hg38.chr17_JH159146v1_alt 117281 19 + 278131 cctcagctagtggcccctt s panTro4.chr17 66237810 19 - 82630442 cctcagctagtggcccctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24769945 19 - 73212453 cctcagctagtggcccctt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47992933 19 - 81552678 tctcagctagtgtcccctt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53097614 19 + 80904711 cctcagctagtggcccctt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52620486 19 + 80997621 cctcagctagtggcccctt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47665286 19 + 74645514 CCTCAGCTAGTGGCccctt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9933077 19 - 75148670 cctcagctagtggcccctt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112805191 19 + 159171411 cctcagctagttgcctctt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39352394 19 - 61074082 acttagcctgtggcctctt i canFam3.chr9 C 0 I 5235 e mm10.chr11 99522179 4082 + 122082543 I a score=1598634.000000 s hg38.chr17_JH159146v1_alt 117300 553 + 278131 ttcatcCTTTTTTTTTTTTCTTGA---ATTATGAGATTT-Tttgtactttgagttctgggatacatgtgcagaacgtgcaggtttgctacataggtatacaagtgccatggtggtttgctgtacccatcaacctgtcatctacattaggtatttctcctaatgctatcccacccctagcccctcaccccctcacagtccccg--gtgtgatgttcccctccctgtgtccatgtgtgctcattgttcaactcccacttatgagtgagaacatgcagtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagctttattcatgtccctg----caaaggacatgaactaatcctttattatggctgtatagtattccatggtgtatatgtgccacattttctttatccagtccatcattgatgggcatttgggttggttccatgtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtgtctttatagtagaatga--tttataatcctttgggtatgtatcaagtaataggattgctgg s panTro4.chr17 66237829 550 - 82630442 ttcatcctTTTTTTTT---CTTGA---ATTATGAGATtt-tttgtactttgagttctgggatacatgtgcagaacgtgcaggtttgctacataggtatacaagtgccatggtggtttgctgcacccatcaacctgtcatctacattaggtacttctcctaatgctatcccacccctagcccctcaccccctcacagtccccg--gtgtgatgttcccctccctgtgtccatgtgtgctcattgttcaactcccacttatgagtgagaacatgcggtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagctttatccatgtccctg----caaaggacatgaactaatcctttattatggctgtatagtattccatggtgtatatgtgccacattttctttatccagtccatcattgatgggcattcgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtgtctttatagtagaatga--tttataatcctttgggtatgtatcaagtaataggattgctgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24769964 549 - 73212453 ttcatcCTTTTTTTTT--TCTTGA---ATTATGAG-TTT-TTTTtactttaagttctgggatacatgtgcagaacgtgcaggtttgctacataggtatacaagtgccatggtggtttgctgcacccatcaacctctcatctacattaggtatttctcctaatgctatccctcccctagaccctcacaccctcacagtccccg--gtgtgatgctcccctccctgtgtccatgtgttctcattgtt-agctcccacttatgagtgagaacatgcggtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagctttatccatgtcgctg----caaaggacatgaactaatcctttattatggctgtatagtattccatggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctaatgtgaatagtgctgcaataaacatacatgtgcatgtgtctttatagtagaatga--tttataatcctttgggtatgtaccaagtaataggattgctgg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47992952 554 - 81552678 ttcatcctTTTTTTTT-TTCTTGA---ATTATGAGATtt-tttgtactttaagttctgggatacatgtgcagaacgtgcaggtttgctacataggtatacaagtgccatggtggtttgctgcaaccatcaacctgtcatctacattaggtatttctcctaatgctatccctcccctagccctcaaccccctgacaggccccactgtgtgatgttcccttccctgtgtccatgtgtgctcattgttcaactcccacttatgagtgagaacatgtggtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagctttatccatgtccctg----caaaggacatgaactaatcctttattatggctgtatagttttccatgctgtatatgtgccacattttctttatccagtctgtcattgatgggcatttgggttggttccaggtctttgctattgtgaatagtgctgcaataaacatacgtgtgcatgtgtctttatagtagaatga--tttataatcctttgggtatgtaccaagtaataggattgctgg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53097633 553 + 80904711 ttcatctA-TTTTTTT-TTCTTGA---ATTATGAGATTT-Tttgtactttaagttcttggatacatgtgcagaacgtgcaggtttgcaatataggtatacacgtgctatggtggtttgctgcacccatcaacctgtcgtctacattaggtatttctcctaatgctatccctcccctagcccctcactccctcacaggccctg--gtgtgatgttcccttccctgtgtccatgagtgctcattgttcaactcccacttatgggtgagaatatgcagtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagcttcatccatgtccctg----caaaggacatgaactaatccttttttatggctacatagtattccacagtatgtatgtgccacattttctttatccagtctatcattgatgggcatttgggttgggtccaagtctttgctattgcaagtagtgctacaataaacatacatgtgcatgtgtccttttagtagaatgatttttataatcctttgggtatgtaccaagtaataggattgctgg i rheMac3.chr16 C 0 I 4 s macFas5.chr16 52620505 553 + 80997621 ttcatctA-TTTTTTT-TTCTTGA---ATTATGAGATTT-Tttgtactttaagttcttggatacatgtgcagaacgtgcaggtttgcaacataggtatacacgtgctatggtggtttgctgtacccatcaacctgtcgtctacattaggtatttctcctaatgctatccctcccctagcccctcactccctcacaggccctg--gtgtgatgttcccttccctgtgtccatgagtgctcattgttcaactcccacttatgggtgagaatatgcagtgtttggttttctgttcctgtgtgagttttctgagaatgatggtttccagcttcatccatgtccctg----caaaggacatgaactaatccttttttatggctacatagtattccacagtatgtatgtgccacattttctttatctagtctatcattgatgggcatttgggttgggtccaagtctttgctattgcaagtagtgctgcaataaacatacatgtgcatgtgtccttttagtagaatgatttttataatcctttgggtatgtaccaagtaataggattgctgg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47665305 554 + 74645514 ttcatctatttttttt-ttcttga---attatgagattt-tttgtactttaagttcttggatacatgtgcagaacatgcaggtttgcaACATAGGTATACACGgcctatggtggtttgctgcacccatcaacctgtcatctacattaggtatttctcctaatgctatccctcccctagcccctcactccctcacaggccctg--gtgtgatgttcccttccctgtgtccatgtgtgctcattgttcaactcccacttatgagtgagaatatgcagtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagcttcatccatgtccctg----caaaggacatgaactaatccttttttatggctacataggaTTCCACagtatgtatgtgccacattttctttatccagtctatcattgatgggcatttgggttgggtccaagtctttgctattgcaagtagtgctgcaataaacatacatgtgcatgtgtccttttagtagaatgatttttataatcctttgggtatgtaccaagtaataggattgctgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9933096 554 - 75148670 ttcatctATTTTTTTT-TTCTTGA---ATTATGAGATTT-Tttgtactttaagttcttggatacgtgtgcagaacgtgcaggtttgcaacataggtatacatgtgccatgttggtttgctgcacccatcaacctgtcatctacattaggtatttctcctaatgctatccctcccctagcccctcactccctcacaggccctg--gtgtgatgttcccttccctgtgtccatgagtgctcattgttcaactcccacttatgagtgagaatatgcagtgtttggttttctgttcctgtgtgagtttgctgagaatgatggtttccagcttcatccatgtccctg----caaaggacatgaactaatccttttttatggctacatagtattccacagtatgtatgtgccacattttctttatccagtctatcattgatgggcatttgggttgggtccaagtctttgctattgcaagtagtgctgcaataaacatacatgtgcatgtgtccttttagtagaatgatttttataatcctttgggtatgtaccaagtaataggattgctgg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112805210 554 + 159171411 ttcatcCTTTTTTTTT-TTTTAAAAAGAATATGAGATTTGTttatactttaagttctgggatatatgtgcagaacacgcaggtttgttacataggtatacacatgccatggtggtttgcagcacccatcaacccgtcatctacatttggtatttctcctaaggctatcccttcctagcccctccaccccacaataggtccag--gtgtg-tgatgctctccctgtgtccatgtgttctcattattcaactcccacttatgaatgaaaacatgcggtgttaggttttctgtttctgtgttagtttgccaagaataatggtttccagcttt----atgtccctgcaaacaaaagacattaccccatccttt-ttatggctgcatagtattccatggtgtatatgtgccacattttctttatctagtgtaccactgatggacatttgggttggttccacgtctttgctattgtgaatagtgctgcaataaacatacatgtgcatttgcctttatagtagaatga--tttataattctttgggaatatactcagtaatgggattgctga i calJac3.chr5 C 0 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99522179 4082 + 122082543 I a score=419327.000000 s hg38.chr17_JH159146v1_alt 117853 191 + 278131 gtcaaactgtatttatggttcttgatccttaagaaattgccacactgtcttctgcattggttgaactaatttacactcccaccaactgtgtaaaagtgttccaatttctctccatcctctccagcatctgttgtttcctgactttttaatgattgtcattctaactggtgtgagatggtatctcattgtgg- s panTro4.chr17 66238379 191 - 82630442 gtcaaactgtatttatggttcttgatccttgagaaattgccacactgtcttccgcattggttgaactaatttacactcccaccaactgtgtaaaagtgttccaatttctctccatcctctccagcatctgttgtttcctgactttttaatgatcgtcattctaactggtgtgagatggtatctcattgtgg- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24770513 191 - 73212453 gtcaaactgtatttatggttcttgatccttgagaaatcgccacactgtcttccgcattggttgaactaatttacactcccaccaactgtgtaaaagtgttcctatttctctccatcctctccagcatctgttgtttcctgactttttaatgatcgtcattctaactggtgtgagatggtatctcattgtgg- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47993506 191 - 81552678 atcaaactgtatttatggttcttgatccttgagaaatcgccacactgtcttccacattggctgaactaatttacactcccaccaactgtgtaaaagtgttcctatttctctacatcatctccagtatctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatcttattgtgg- i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52621058 183 + 80997621 --------gtatttatggttctagatccttgaggaatcaccacactgtcttccacaatggctgaactaatttaccctcccaccaactgtgtaaaagtgttcctatttctctacatcctctctagcatctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtgg- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47665859 183 + 74645514 --------gtatttatggttctagatccttgaggaatcaccacactgtcttccacaatggctgaactaatttacactcccaccaactgtgtaaaagtgttcctatttctctacatcctctctagcatctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtgg- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9933650 183 - 75148670 --------gtatttatggttctatagccttgaggaatcaccacactgtgttccacaatggctgaactaatttacacttccaccaactgtgtaaaagtgttcctatttctctacatcctctctagcatctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatgatatctcattgtgg- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112805764 186 + 159171411 gtcaactggta------gttctagatccttgaggaattgccacactgtattccacaatagttgaattaatttacactcccaccaacagtgtaaaagcatttctgtttctccacatcctccccagcatctgttgtttcctgactttttaatgatcaccattctaactggcctgagatgatatctcattgtgct i calJac3.chr5 C 0 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99522179 4082 + 122082543 I e rheMac3.chr16 53098186 4 + 80904711 I a score=612522.000000 s hg38.chr17_JH159146v1_alt 118044 222 + 278131 tttgatttgcatttctctagtgaccagtgatgatgagc-ttttttcatatgtttgttggccacataaatgtcttcttttgagaagtgtctttctatatccttagcccatttttttgatggggttgtttg-ttttttcttgtaaatttgtttaagttccttgtagattctgtatattagccctttgtcagatggacagattgcaaaaattttctcccattCTGTA s panTro4.chr17 66238570 222 - 82630442 tttgatttgcatttctctagtgaccagtgatgatgagc-ttttttcatatgtttgttggccacataaatgtcttcttttgggaagtgtctttttatatccttagcccatttttttgatggggttgtttg-ttttttcttgtaaatttgtttaagctccttgtagattctgtatattagccctttgtcagatggacagattgcaaaaattttctcccattCTGTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24770704 222 - 73212453 tttgatttgcattcctctaatgaccagtgatgatgagc-ttttttcatatgtttgttggccacataaatgtcttcttttgagaagtgtctttttatatccttagcccatttttttgatggggttgtttg-ttttttcttgtaaatttgtttaagtttcttgtagattctgtatattagccctttgtcagatggatatattgcaaaaattttctcccattttgta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47993697 221 - 81552678 tttgatttgcatttctctaatgaccagtgatgatgagc-ttttttc--atgtttgttggacacataaatgtcttcttttgagaagtgtctttttatatccttagcccatttttttgatggggttgtttgtttttttcttgtacatttgtttaagttccttgtagattctgtatattagccctttgtcaggtggatagattgcaaaaattttctcccattcAGta i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53098190 218 + 80904711 tttgatttgcatttctttcatgaccagtgatgatgagcatttttgcatatgtctgttggctgcataaatgtcttcatttgagaagtttctgttcatatccttagccca-ttttttgatggggttg-----ttttttcttgtaaatttgtttaagttccttgtagattctgtatattagtgctttctcagatggatagattgcaaaaattttctcccattctgta i rheMac3.chr16 I 4 C 0 s macFas5.chr16 52621241 217 + 80997621 tttgatttgcatttctctgatggcaagtgatgatgagc-ttttttcatatgtttgttggccacataaacgtcttcttttgagaagtgtctttttatatccttagccca-ttttttgatggggttg-----ttttttcttgtaaatttgtttaagttccttgtagattctgtatattagtgctttctcagatggatagattgcaaaaattttctcccattctgta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47666042 217 + 74645514 tttgatttgtgtttctctaatgaccggtgatgatgagc-ttttttcatatgtttgttggccacataaatgtcttcttttgagaagtgtctttttatatctttagccca-ttttttgatggggttg-----ttttttcttgtaaatttgtttaagttccttgtagattctgtatattagtgctttctcagatggatagattgcaaaaattttctcccattctgta i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9933833 217 - 75148670 tttgatttgtgtttctctaatgaccggtgatgatgagc-ttttttcatatgtttgttggccacataaatgtcttcttttgagaagtgtctttttatatccttagccca-ttttttgatggggttg-----ttttttcttgtaaatttgtttaagttccttgtagattctgtatattagtgctttctcagatggatagattgcaaaaattttctcccattctgta i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112805950 206 + 159171411 tttgattggcatttctctaatgaccagtgatgatgagctttttttcacatgttttttggccgcataaatgtcttctttt-agaagtgtctgttcatatactttgtaga-tttgt----------------ttttttcttgtaaatttgtttaagttccttgtaaattctgggtattagccctttgtcagatggatagattgcaaaagttttctcctattctgta i calJac3.chr5 C 0 I 1530 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99522179 4082 + 122082543 I a score=5103085.000000 s hg38.chr17_JH159146v1_alt 118266 1789 + 278131 ggaggctgaggcagaagaattacttgaacccaggagttcaagttcag-gtgggcaacacagtgcgatttcatttttaataaaataaaata------------------aaATA-----CAAAATAAAAGCCAT-GGGGAAAAGGTAGACCGTTATATGTATTATATGTACTTTGGGGACAATTTTGTATTCCCTTTGGTGTGGGGGCAGGGAATGTTGAAACCATACTTCATCCTTTACAGTGGGACGAATTACAAGTAGatcaaagattgagatatgaaaaataaataataaatatgCCCAAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGACTTTTCCAATGATGACTCAAAATTAAGAAGCCGTAAAAAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGGTGAAAAATACAACCTGTAAAACCAGAAGACAAGATGACAAACTGGGAAACAATATTACAATTACACTCTagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagagaaatgtaaatttaaattatactgagatattttagttttccacctatcaaactgaaaaaaa-tcaaagtttgataacaGATACATT-CACTGCCTATAGCACTCTCATTGCTTGTGGCAATGAAATGTAAATTCATGcaagttactataatgctactacaattaaaacagtgtgatattggcataagggttggaaagtagatcaatgagaaagaatatagagtttagaaatagactcacatatatgtggtcaattgatttctgacaaagatcccaaagcaagtcaatgagaaaaggaaagctttttcaatactgttttttcaatactgttcaatacttgtcgctgaatcaagtggatacttgtatagccaaaatgaatacatcttgatctctacctcacgctacgtataaaacttaattcaggttggattaaacacttaattgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttctgccatgagaagacttctaagctcatggaggacactataataaatagattagacttcatcaaaatgaaaaccttttgttgatcagataaatagctaagaaagtgaaaaggcaagctacagcctgggttaaaatattCTCT--CTCTCTCTTCATACACCCAC----------C---CCCCAACGCACACATTAGAACACATACATACACAACGTCATATCTTTTGtaacaatgggaatatattctgagaaattcacctttagtgattttgttgttgtgtaaacatcacagtggacttcatgaacctggatggtatagcctataacacacttaggctatatggtatagtctattgctcataggctgtaaacctgcacagcatgttactgtactgaatacagtaggcaactgtaacacaatggtaagtatttgt-tatctggaaacacatttaaacatagaaaaggtacaataaaaatatgacattatagttttttgggacagcttttgtatgtgtatgttccat------------------------------------------------------------------cattgttgactgaaatgtcattatgtggcacatgactCTataaataaatatgtgtataaaaataaataaacacataTTTATTTATACAGTAATATACTAtctctctct---ctctc----------------------------------------------------------tctct----------------ctctct-ctGACAAAGGACCTCCc------ccaaggacctagcaatttcatggttaggtatatgtcca--------agagagatgaatgtatatattttatacacacaataatatttgcacaagaatgcttata s panTro4.chr17 66238792 1776 - 82630442 ggaggctgaggcagaagaattacttgaacccaggagttcaagttcag-gtgggcaacacagtgcgatttcatttttaataaaataaaata------------------aaataaaatacaaaataaaaGCCAT-GGGGAAAAGGTAGACCGTTATATGTA---------CTTTGGGGACAATTTTGTATTCCCTTTGGTGTGGGGGCAGGGAATGTTGAAACCATACTTCATGCTTTACAGTGGGACAAATTACAAGTAGATCAAAGATTGAGATATGAAAAATAAATAATAAATATGCCCAAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGGCTTTTCCAATGATGACTCAAAATTAAGAAGTCGTAAAAA-CTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGATGAAAAATACGACCTGTaaaaccagaagacaagatgacaaactgggaaacaatattacaattacactctagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaacgctcaatgtcactcatgaaaagagaaatgtaaatttaaattatactgagatattttagttttccacctatcaaactgaaaaaaa-tcaaagtttgataacagatacatt-cactgcctatagcactctcattgcttgtggcaatgaagtgtaaattcatgcaagttactataatgctactataattaaaacagtgtgatattggcataagggttggaaagtagatcaatgagaaagaatatagagtttagaaatagactcacatatatgtggtcaattgatttctgacaaagatcccaaagcaagtcaatgagaaaaggaaagctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcaagtggatacttgtatagccaaaatgaatacgtcttgatctctacctcacgctacgtataaaacttaattcaggttggattaaacacttaattgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttctgccatgcgaagacttctaagctcatggaggacactataataaatagattagacttcatcaaaatgaaaaccttttgttgatcaaataaatagctaagaaagtgaaaaggcaagctacagcctgggttaaaatattCTCT--CTCTCTCTTCATACACCCAC----------CACCCCCCCACACAAACATTAGAACACATACATACACAACGTCATATCTTTTGtaacaatgggaatatattctgagaaattcacctctagtgattttgttgttgtgtaaacatcacagtggacttcatgaacctggatggtatagcctataacacacttaggctatatggtatagtctattgctcataggctgtaaacctgcacggcatgttactgtactgaatacagtaggcaactgtaacacaatggtaagtatttgt-tatctggaaacacatttaagcatagaaaaggtacaataaaaatatgacattatagttttttgggacagcttttgtacgtgtatgttccat------------------------------------------------------------------cattgttgactgaaatgtcattatgtggcacatgactCtataaataaatatgtgtataaaaataaataaaca--tatttatttataCAGTAATATACTATCTCTCTCT---CTCTC----------------------------------------------------------TCTCT-------------------------GACAAAGGACCTCCc------ccaaggacctagcaatttcatggttaggtatatgtcca--------agagagatgaatgtatatattttatacacacaataatatttgcacaagaatgcttata i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24770926 1775 - 73212453 ggaggctgaggcagaagaattacttgaacccaggagttcaagttcag-gtgggcaacacagtgcgatttcatttttaataaaataaaata------------------aaata-----taaaaTAAAAGCCAT-GGGGAAAAGGTAGACTATTATATGTA---------CTTTGGGGACAATTCTGTATTCCCTTTGGTGTGGGGACAGGGAATGTTGAAACCATACTCCATCCTTTACAGTGAGACAAATTACAAGTAGATCAAAGATTGAGATATGAAAAGTAAATAATAAATATGCCCAAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGACTTTTCCAATGATGACTCAAAATTAAGAAGCCATAAAGAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAAATTGTGCTTGGATGAAAAATACAACCTGTAAAACCAGAAGACAGGATGACAAACTGGGAAACAATATTACAGTTACACTCTagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagagaaatgtaaatttaaattatactgagatattttagttttccacctatcaaactgaaaaaaa-tcaaagtttgataacaGATACATT-CACTGCCTATAGCACTCTCATTGCTTGTGGCAATGAAATGTAAATTCATGcaagttactataatgttactataattaaaacagtgtgatattggcataagggttggaaagtagatcaatgagagagaatgtagagtttagaaatagactcacatatatgtggtcaattgatttctgacaaagatcccaaagcaagtcaacaagaaaaggaaagctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcaagtggatacttgtacagccaaaatgaatacatcttgatctctacctcatgctacgtataaaacttaattcaggttggattaaacacttaaatgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttgtgccatgcgaagacttctaagctcatggaggacactataataaatagattagacttcatcaaaatgaaaaccttttgctgatcaaataaatagctaagaaagtgaaaaggcaagccacagcctgggttaaaatattCTCT--CTCTCTCTTCATACACCCAC----------C---CGCCGACACACACATTAAAACACATACATACACAATGTCATATCTTTTGtaacaatgggaatatattcagagaaattcacctttagtgattttgttgttgtgtaaacatcacagtggacttcatgaacctggatggtatagcctataacacacttaggctatatggtatagtctattgctcacaggctataaacctgcacagcatgttactgtactgaatacagtaggcaactgtaacacaatggtaagtatttgt-tatctggaaacacatttaagcttagaaaaggtacaataaaaatatgacattatagttttctgggacagcttttgtacatgtgtgttccat------------------------------------------------------------------cattgttgactgaaatgtcattatgtggtacatgactCTATAAATAAATATGTGTATAAAAATAAATGAACACATATTTATTTATACAGTAATGTACTCTCTCTCTCT---CTATA----------------------------------------------------------TATAT--------------------AT-CTGACAAAGGacctccc------ccaaggacctagcaatttcatggttaggtatatgtcca--------agagagatgaatgtatatattttatacacacaataatatttgcacaagaatgcttata i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47993918 1777 - 81552678 ggaggctgaggcagaagaattacttgaacccaggagttcaagttcag-gtgggcaacacagtgagatttcatttttaataaaataaaata----------------------------taaaacaaaaGCCAC-GGGGAAAAGGTAGACCATTATATGTA---------CTTTGGGGACAATTCTGTATTCCCTTTGGTGTGGGGGCAGGGAATGTTGAAACCATACTTCATCCTTTACAGTGGGACAAGTTACAAGTAGATCAAACATTCATATATGAAAAATAAATAATAAATATGCCCCAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGACTTTTCCAATGATGACTCAAAATTAAGAAGCCATAAAAAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGATGAAAAATACAACCTGTAAAACCGGAAGACAAGATGACAGACTGGGAGACAATATTACAATTACACTCTagacagtgactaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgcttaatgtcactcatgaaaagggaaatgtaaatttaaattatactgagatattttagttttccacctatcaaactgaaaaaaa-tcaaagtttgataacagatacatt-cactgcctatagcactctcattgcttgtggcaatgaagtgtaaattcatgcaagttactataatgctactataattaaaacaatgtgatattggcataagggttggaaagcagatcaatgagaaagaatatagagtttagaaatagactcacatatatgtggtcaattgatttctgacaaagatcccaaagcaagtcaatgagaaaaggaacgctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcaagtggatacttgtatagcaaaaatgaatacatcttgatctctacctcacgctatgtataaaacttaattcaggttggattaaacacttaaatgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttgtgccatgcaaagacttctaagcttatggaggacactataataaatagattagacttcatcaaaatgaaaaccttttgctgatcaaataaatagctaagaaagtgaaaaggcaagccacagcctgggttaaaatattCTCTCCCTCTCTCTTCATACACCCAC----------C---ACCCCCCACACACATTAGAACACATACATACACAATGTCATATCTTTTGtaacaatgggaatatattctgagaaattcacctttagtgattttgttgttgtgtaaacatcacagtggacttcatgaacctggatggtatagcctataacacacttaggctatatggtatagtctattgctcataggctataaacctgcacagcatgttactgtactgaatacagta-gcaactgtaacacaatggtaag----tgt-tatctggaaacacatttaagcatagaaaaggtacaataaaaacatgacattatagttttctgagacagcttttgtacatgtgtgttccat------------------------------------------------------------------catcattgattgaaatgtcattatgtggtacatgactCTataaataaatatgtgtataaaaataaataaacacataTTTATTTATACAGTAACACtatatatatatat---atata----------------------------------------------------------tatata----------tatatatatat-CTGACAAAGGACCTCCc------ccaatgacctagcaatttcatggttaggtatatgtcca--------agagagatgaatgtatatattttatacacacaaaaatatttgcacaagaatgcttata i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53098408 1819 + 80904711 ggaggctgaggcagaagaattacttgaacccagtagttcaagttcagtgtaggcaacacagtgagatttcatttttaacaaagtaaaATA------------------AAATA-----TAAAATAAAAGCCAT-GTGGAAAAGGTAAACCATTATATGTA---------CTTTGGGGACAATTCTATATTCCCTTTGGTGTGGGGGCAGGgaatgttgaaaccatacttcattctttacagtgagacaaattacaagtagatcaaagattcagatatgaaaaataaataataaatatgccccaa-aggataattattttataaatttggagtcagaagacttttccaattatgactcaaaattaagaagccataaaaaactgttagatttgactccataaaataacagtgtttgaacttgtgcttggatgaaaaatacaacctgtaaaaccagaagacaagatgacaaactgggaaacaatattAT-ATTACACTCcagacaatgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagaaaaatgtaaatttaaatcatactgagatactttagttttccacctatcaaactgaaaaaaagtcaaagtttgataacagatacatt-cactgcctatagcactctcattgcttgtggcaatgaaaTGTAAATTCATGcaagttactataatgctactataattaaaacagtgtgattttggcttaggggttggacagtagatcaatgagaaagaatatagagtttagaaatagactcacatatatgtgatcaattgatttctgacaaagatccaaaagcaagtcaatgagaaaaggaaagctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcgattggatacttgtatagcaaaaatgaatacttcttgatccctacctcacactatgtataaacattaattcaggttggattaaacacttaaatgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttgtgccatgtgaaaacttcttagctcatggaggacactataataaatagattaaacttaatcaaaatgaaaa-cttttgctgatcaaataaatagctaagaaagtgaaaaggtaagccacagcctgggtgaaaatattCTCTCTCT----------ACACCCCCACCCCCCACCC---CCACCCCACATACATTAGAACACATATATACACAACATCATATCTTTTGtaacagtgggaatatattctgtgaaattcacctttagtgattttgttgttgtgtaaacatcacagtggacttgatgaacttggatggtatagcctataacacact------------tatagtctattgcttgtaggctataaacctgcacaacatgttactgtgctgaatacagtaggcaactgtaacacaatggtaagtattagt-tatctggaaacacatttaagcatagaaaaggtacaataaaaatatgacattatagttttctgggacaacttttgtacgtgtgtgttccat------------------------------------------------------------------cattgttgactgaaatgtcattatgtggtgcatgactCTATAAATAAATATGAGTATAAAAATAAATAAACACA----TATTTATACAGTAATGTACTATATCTATGT---CTGTCTNNNNNNNNNNNNNNNNNNNN--------------------Ntatctatctatctatctatctatctatctatctatctatctat-ctaACAAAGGACCTCCc------cccaggacccagcaatttcatggttaggtgtatgtcca--------agagagatgaatgtatatgttttatactcacaacaatatttgcacaagaatgcttata i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52621458 1804 + 80997621 ggaggctgaggcagaagaattacttgaacccagtagttcaagttcagtgTAGGCAACACAGTGAGATTTCATTTTTaacaaagtaaaata------------------aaata-----taaaataaaaGCCAT-GGGGAAAAGGTAAACCATTATATGTA---------CTTTGGGGACAATTCTATATTCCCTTTGGTGTGGGGGCAGGGAATGTTGAAACCATACTTCATTCTTTACAGTGAGACAAATTACAAGTAGATCAAAGATTCAGATATGAAAAATAAATAATAAATATGCCCCAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGACTTTTCCAATGATGACTCAAAATTAAGAAGCCATAAAAAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGATGAAAAATACAACCTGTAAAACCAGAAGACAAGATGACAAACTGGGAAACAATATTACAATTACACTCcagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagaaaaatgtaaatttaaatcatactgagatactttagttttccacctatcaaactgaaaaaaaatcaaagtttgataacaGATACATT-CACTGCCTATAGCACTCTCATTGCTTGTGGCAATGAAATGTAAATTCATGCAAGttactataatgctactataattaaaacagtgtgattttggcttaggggttggacagtagatcaatgagaaagaatatagagttttgaaatagactcacatatatgtgatcaattgatttctgacaaagatccaaaagcaagtcaatgagaaaaggaaagctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcgattggatacttgtatagcaaaaatgaatacttcttgatccctacctcacactatgtataaacattaattcaggttggattaaacacttaaatgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttgtgccatgtgaaaacttcttagctcatggaggacactataataaatagattagacttaatcaaaatgaaaa-cttttgctgatcaaataaatagctaagaaagtgaaaaggtaagccacagcctgggtgaaaatattCTCTCTCTCTCTC----CATACGCCCCCCACCCCCCC---CCACCCCACATACATTAGAACACATATATACACAACATCATATCTTTTGtaacagtgggaatatattctgtgaaattcacctttagtgattttgttgttgtgtaaacatcacagtggacttgatgaacttggatggtatagcctataacacact------------tatagtctattgcttgtaggctataaacctgcacaacatgttactgtgctgaatacagtaggcaactgtaacacaatggtaagtattagt-tatctggaaacacatttaagcatagaaaaggtacaataaaaatatgacattatagttttctgggacaacttttgtacgtgtgtgttccat------------------------------------------------------------------cattgttgactgaaatgtcattatgtggtgcatgactCTataaataaatatgagtataaaaataaataaacaca----taTTTATACAGTAATGTACTATATCTATGT---CTGTC------------------------------------------TGtctatctatctatctatctatctatctatctatctatctat-ctatctaAGGACCTCCc------cccaggacccagcaatttcatggttaggtgtatgtcca--------agagagatgaatgtatatgttttatactcacaacaatatttgcacaagaatgcttata i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47666259 1820 + 74645514 ggaggctgaggcagaagaattacttgaacccagtagTTCAAGTTCAGtgtaggcaacacagtgagatttcatttttaacaaagtaaaata------------------aaata-----taaaataaaagccat-gGGGAAAAGGTAAACCATTATATGTA---------CTTTGGGGAcaattctgtattccctttggtGTGGGGGCAGGGAATGTTGAAACCATACTTCATTCTTTACAGTGAGACAAATTACAAGTAGATCAAAGATtcagatatgaaaaataaataatacatatgccccaa-aggataattattttataaatttggagtCAGAAGACTTTTCCAATGATGACTCAAAATTAAGAAGCCATAAAAAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGATGAAAAATACAACCTGTAAAACCAGAAGACAAGATGACAAACTGGGAAACAATATTACAATTACACTCCAGACAGTGaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagaaaaatgtaaatttaaatcaTACTGAGATACTTTAGTTTTCCACCtatcaaactgaaaaaaaatcaaagtttgaTAACAGATACATT-CACTGCCTATAGCACTCTCATTGCTTGTGGCAATGAAATGTAAATTCATGCAAGTTACTATAATGCTActataattaaaacagtgtgattTTGGCTTAAGGGTTGGACAGTAGATCAATGAGAAAGAATATAGAGTTTTGAAATAGACTCACGTATATGTGATCAATTGATTTCTGACAAAGATCCGAAAGCAAGTCaatgagaaaaggaaagcttTTTCAATACTGTTTTT-CAATACTGTTCAATACTTGTTGCTGAATCAATTGGATACTTGTATAGCAAAAATGAATACTTCTTGATCCCTACCTCACACTATGTATAAACATTAATTCAGgttggattaaacacttaaatgtgaAGATTTCAAGTCTAAAGTTTTTAGAAGAAAACTCAGAAGATTATATTCATAACCTTGTGCCATGCGAAAACTTCTTAGCTCATGGAGGACACTATAATAAATAGATTAGACTTaatcaaaaggaaaa-cttttGCTGATCAAATAAATAgctaagaaagtgaaaaggtaagccacagcctgggtgaaaatattctctctctctctcttcatacgccccccaccccccccc---ccaccccacatacattagaacacatacatacacaacatCATATCTTTTGTAACAGTGGGAATATATTCTGCGAAATTCACCTTtagtgattttgttgttgtgtaaACATCACAAAGGACTTGATGAACTTGGATGGTATAGCCTATAACACACTTAAGCTATATGGTATAGTCTATTGCTTGTAGGCTataaacctgcacagcatgttactgtgctgaatacagtaggcaactgtaacacaatggtaagtattagT-TATCTGGAAACACATTtaagcatagaaaaggtacaataaaaatatgacattatAGTTTTCTGGGACAACTTTTGTACGTGTGTGTTCCat------------------------------------------------------------------cattgttgactgaaatgtcattacgTGGTGCATGactctataaataaatatgagtataaaaataaataaacaca----tatttatacaGTAATGTActatatctatgt---ctgtc------------------------------------------tgtctatctatctatctatctatctatctatctatctatctat-ctatctaaggACCTCCC------CCCAGGACCCAGCAATTTCATGGTTAGGTGTATGTCCA--------AGAGAGATGAATGTATATGTTTTATACTCACAACAATATTTGCACAAGAATGCTTATA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9934050 1800 - 75148670 ggAGGCTGAGGCAGAAGAATTACTTCAACCCAGTAGTTCAAGTTCAGTGTAGGCAACACAGTGAGATTTCATTTTTaacaaagtaaaata------------------aaata-----taaaataaaaGCCAT-GGGGAAAAGGTAAACCATTATATGTA---------CTTTGGGGACAATTCTGTATTCCCTTTGGTGTGGGGGCAGGGAATGTTGAAACCATACTTCATTCTTTACAGTGAGACAAATTACAAGTAGATCAAAGATTCAGATATGAAAAATAAATAATAAATATGCCCTAA-AGGATAATTATTTTATAAATTTGGAGTCAGAAGACTTTTCCAATGATGACTCAATATTAAGAAGCCATAAAAAACTGTTAGATTTGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGATGAAAAATACAACCTGTAAAACCAGAAGACAAGACGACAAACTGGGAAACAATATTACAATTACACTCcagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaaatgctcaatgtcactcatgaaaagaaaaatgtaaatttaaatcatactgagatactttagttttccacctatcaaactgaaaaaaaatcaaagtttgataacaGATACATT-CACTGCCTATAGCACTCTCATTGCTTGTGGCAATGAAATGTAAATTCATGCAAGttactataatgctactataattaaaacagtgtgatattggcttaagggttgaacagtagatgaatgagaaagaatatagagtttagaaatagactcacatataagggatcaattgatttctgacaaagatccgaaagcaagtcaatgagaaaaggaaagctttttcaatactgttttt-caatactgttcaatacttgttgctgaatcgattggatacttgtatagcaaaaatgaatacgtcttgatccctacctcacactatgtataaacattaattcaggttggattaaacacttaaatgtgaagatttcaagtctaaagtttttagaagaaaactcagaagattatattcataaccttgtgccatgcgaaaacttcttagctcatggaggacactataataaatagattagacttaatcaaaatgaaaa-cttttgctgatcaaataaatagctaagaaagtgaaaaggtaagccacagcctgggtgaaaatattCTCTCTCTCTCTCTTCATACGCCCCC----CAACCCC---CCACCCCACATACATTAGAACACATACATACACAACATCATATCTTTTGtaacagtgggaatatattctctgaaattcacctttattgattttgttgttgtgtaaacatcacagtggacttgatgaacttggatggtatagcctataacacacttaagctatatggtatagtctattgcttgtaggctacaaacctgcacagcatgttactgtgctgaatacagtaggcaactgtaatacaatggtaagtattagt-tatctggaaacacatttaagcatagaaaaggtacaataaaaatatgatgttatagttttctgggacaatttttgtacgtgtgtgttccat------------------------------------------------------------------cattgttgactgaaatgtcattgtgtggtacatgactCTGtaaataaatatgagtataaaaataaataaacaca----tatttataCAGTAATGTACTATATCTATGT---CTGTC----------------------------------------------------------TGtctatctatctatctatctatctat-ctaACAAAGGACCTCCc------cccaggacccagcaatttcatggttaggtatatgtcca--------agagagattaatgtatatgttttatactcacaacaatatttgcacaagaatgcttata i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112807686 1913 + 159171411 ggaggctgaggctgaaggattacttgaacccaggagttcaagttcagcctgggcaatacagcaagacttcatttttaataaaataaaataaataaaataaaataaaataaata-----aaaaataaaaGCCATAGGGGAAAAGGTAAACCATTATATGTA---------CTTTGGCGACAATTCTGTATTCCTTTTGGTG-GGGGGCACGGAATGTTGAAACCATACT-CATTCTTTATAGTGGGACAAACTACAAGTAGATCAAAGATCCAAATATGAAAAATAAATAATACATATGCTAAAAGAGGATAATTATTTTATAAATTTGGAGTCCAAAGACTTTTCCAATGATGACTCAAAATTAAGAAACCATTAAAAACTTATACTTTCGACTCCATAAAATAACAGTGTTTGAACTTGTGCTTGGACGAAAAATACGACCTGTAAAACCAGAAGACAAGACGATAAACTGGGAAACAATATTACAATCACACTGTagacagtgaccaaaaggaaaatacaaaaggcacttaaaataagaaaaagtactcaatgtcactcatgaaaagagaaatgtaaatttaaattatactgagagacttcagttttctacctatcaaactgaaaaaaa-tcaaagtttggtaacaGATACATTGCGCTGCCTATAGCACTCTCGTTGCTTGTGGCAATGAAATGCAACTTCATACAAGTTACCTTAAtac----ataatgaaaacagtgtgatattggtgtaagggttggaaagtagatcaatgagaaagaatatagagtttagaaacagactcacgtgtatgtggtcaactgatttttgacaaagatcccagagcaagtcaatgagaaaaggaaagctttttcagtactgtcttt-cagtactgttcaatacttgttgctgaatcaagtggctacttgtatcgcaaaaatgaatcaatcctgatttctacctcacgctatgtgtaaaaattcattcagattggattaaatgcttaaatgtgaagatagcaagtgtaaacgttttagaagaaaacgtagaagattatatttataaccttgtgacatgcaaagactccttggctcatgggagatattgtaataaatacagtagacttcatcaaaataaaaaccttttgctgatcaaataaatagataagaaaatgaaaaggcaagccacagcctgggtgaaaatattCTTTCTGTCTCTCTTCATATACCACC----------C---CCC-----CACACGTTAGTACACATACATAGACAcagttgtatgttttgtaacaatgggaatatattctgagaacttcaccttcagtga-tttgttgttgtgcgaacatcacggtgggcttcatgaacctggatggtatggtctgtaacacatttaggctacatggtatagtctgttgctcgtaggctatgaacctgcacagcatgttactgtactgagtacagtaggcaattgtaacataatggtaagtatttgtgtatctataaacacatttaaacatagaaaaggtacaataaaaacatggcattatacttttctgggacaacttttgta--tctgtattccattgttcactgaaatgtcattaaaatatggcattatagttttctgggacatcttttatgtgtgtattccattgttggctgaaatgtccttatgtggtacatgactATATAAATA-----GTGTATAAAAATA----AACACGTATTTATTTATACAGTCGTTCACTATATATATATGCACTATA---------------------GTCATGCACTTTacacacaggcgcacgcgcacgtgcacacacacacacatacacacacacacacacacacacaGGACCTCCCCAAGGACCAAGGACCCAGCCATTTTATGGCTAGGTATATGTCCACGAGAGATAGAGAGATGAACGTATTTATTttatacacacaaaagtgtttgaac-----tgcttgta i calJac3.chr5 I 1530 I 1642 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99522179 4082 + 122082543 I a score=1749170.000000 s hg38.chr17_JH159146v1_alt 120055 723 + 278131 gcagctatattcttaatagcactaaaataaaaat-----aactgctcataaacagaataatgga-caacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaataaagaatgaactgccggtactcatgacaccatggaaaaatctcaaaaacatattgagctgaagaagtcaggcacaaaacagtacgaacagtatgactacatttatattaacttcaagaacaggcaaaactcatctttgacatggttagagataagagtagtggttgtctctgtcagagagatgtactggctggaaagcaacaagaaagaatttctaaggttgatgttctacattttgaaatgctattctgtatcttgatctgggtgttgattacacaaattcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactctattgcccaggctggagtttagtagcatga--tcatagctcactgaagccttgaattactgggctcaagttgtcttcccacctcagcttcccaagtagctgggactacaggcacatgccaccatgcctggctaatttaaaaaaa-tttttttagagatggggcctcattatgttgcccaggctggcataaactcctaacctcaactgatcctcccaccttggcctcccaaagcactgggattacaagcgtgagccactgtgcccagcctgac s panTro4.chr17 66240568 723 - 82630442 gcagctatattcttaatagcactaaaataaaaat-----aactgctcataaacagaataatgga-caacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaacaaagaatgaactgctggtactcatgacaccatggaaaaatctcaaaaacatactgagctgaagaagtcaggcacaaaacagtatgaacagtaggactacatttatattaacttcaagaacaggcaaaactcatctttgacatggttagagataagaatcgtggttgtctctgtcagagagatatactggctggaaagcaacaagaaagaatttctaaggttgatgttctacattttgaaatgctattctgtatcttgatctgggtgttgattacacaaattcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactctattgcccaggctggagtttagtagcatga--tcatagctcactgcagccttgaattactgggctcaagtggtcttcccacctcagcttcccaagtagctgggactacaggcacatgccaccatgcctggctaattaaaaaaaa-tttttttagagatggggcctcattatgttgcccaggctggcataaactcctaacctcaactgatcctcccaccttggcctcccaaagcactgggattacaagcgtgagccactgtgcccagcctgac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24772701 717 - 73212453 gcagctatattcttaatagcactaaaataaaaat-----aactgctcataaatggag-aatgga-caacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaataaagaatgaactgctggtactcacgacatcatggaaaaatctcaaaaacatattaagctgaagaagtcaggcataaaacagtacaaacagtatgactacatttatgttaacttcaagaacaggcaaaactcatctttgacatggttagagataagaatagtggttgtctctgtgagagagatgtattggctggaaagcaacaagaaagaatttctaaggttgatgttctacattttgaaatgctat------ccttgatctgggtgttgattacacaagttcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactctattgccgaggctggagttcagtagcatgaactcatagctcactgcagccttgaattactgggctcaaatggtcttccggcctcagcttcccaagtagctgggactacaggcacatgccaccatgcctggctaatttaaaaaaa--ttttttagagatggggcctcattatgttgcccaggctggcataaactcctaacctcaactgatcctcccaccttggcctcccacagcgctgggattacaagcgtgagccactgtgcccagcctgac i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47995695 727 - 81552678 gcagctatattcttaatagcactaaaataaaaataactcaactgctcataaacaggataatggatcaacaaactgtgacatgtttatgtaatggagtagtacgcagcaacaataaagaatgaactgctggtactcaagacaccatggaaaaatctcaaaaacatattgagctgaagaagtcaggcacaaaacagtacaaacagtatgaccacatttatattaagttcaagaacaggcaaaactcatctttgacatggttagagataagaatagtggttgtctctgtgggagagatgcattggctggaaagcaacaagaaagaatttctaaggttgatgttctacattttgaaatgctattctgtatcttgatctggttgttgattacacaagttcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactctattgcccaggctggagtttagtagcatga--tcatagctcactatagccttgaattactgggctcaagtggtcttctggcctcagcttcccaagtagctgggactacaggcacatgccactatggctggctaattaaaaaaaa---gttttagagatggggcctcattatgttgcccaggctggcataaactcctaacctcaactgatcctcccaccttggcctcccaaagcgctgggattacaagcgtgagccactgtgcccagcctgac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53100227 730 + 80904711 tcagttatattcttaatagcactaaaataaaaataactcaactgctcataaacaggagaatggatcaacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaataaagaataaactgctggtactcacgacacgatggaaaaatctcaaaaacatattgagctgaagaagtcaggcacaaaacagtacaaacagtatgactacatttacattaacttcaagaataagaaaaactcatctttgatatagttagagataagaatagtggttgtctctgtgggagagatgtgttggctagaaagcagtaagaaagaatttctaaggttgatgttctacatgttgaaatgctattctgtatcttgatctgggtgttgattacacaagttcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactttgttgcccaggctggagtttagtagcatga--tcatagctcactgcagccttgaattactgggctcaagtggtcttcccgcctcagtttcccaagtagctgggactacaggcacatgccaccatgcctggctaattaaaaaaaattttttttagagatggggcctcattgtgttgcccagcctggcataaactcctgacctcaactgatcctcccaccttgacctcccaaagtgctgggattacaagcgtgagccactgtgcccagcctgac i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52623262 730 + 80997621 tcagttatattcttaatagcactaaaataaaaataactcaactgctcataaacaggagaatggatcaacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaataaagaataaactgctggtactcacgacaccatggaaaaatctcaaaaacatattgagctgaagaagtcaggcacaaaacagtacaaacagtatgactacatttacattaacttcaagaataagaaaaactcatctttgatatagttagagataagaatagtggttgtctctgtgggagagatgtgtcggctggaaagcagtaagaaagaatttctaaggttgatgttctacatgttgaaatgctattctgtatcttgatctgggtgttgattacacaagttcatgtgctttcaaactccatgaagctgcctacttttatttttatttttagacacagggtctcactttgttgcccaggctggagtttagtagcatga--tcatagctcactgcagccttgaattactgggctcaagtggtcttcgcacctcagtttcccaagtagctgggactacaggcacatgccaccatgcctggctaattaaaaaaaattttttttagagatggggcctcattgtgttgcccagcctggcataaactcctgacctcaactgatcctcccaccttgacctcccaaagtgctgggattacaagcgtgagccactgtgcccagcctgac i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47668079 722 + 74645514 TCAGTTATATTCTtaatagcattaaaataaaaataactcaactGCTCATAAACAGGAGAATGGATCAACAAACTGTGACATGTTTATGTAATGGAGTAGTATGCAACAACAATAAAGAATAAACTGCTGGTACTCACGACACCAtggaaaaatctcaaaaacatattgAGCTGAAGAAGTCAGGCACAAAACAGTACAAACAGTATGACTACATTTACATTAACttcaagaataagaaaaactCATCTTTGATATAGTTAGAGATAAGAATAGTGGTTGTCTCTGTGGGAGAGATGTGTCAGCTGGAAAGCAGTAAGAAAGAATTTCTAAGGTTGATGTTCTACATGTTGAAATGCTATTCTGTATCTTGATCTGGGTGTTGATTACACAAGTTCATGTGCTTTCAAACTCCATGAAGCtgcctacttttatttttatttttagacacagggtctcactttgttgcccaggctgga-------agcatga--tcatagctcactgcagccttgaattactgggctcaagtggtcttcccacctcagtttcccaagtagctgggactacaggcacatgccaccatgcctggctaattaaaaaaaa-tttttttagagatggggcctcattgtgttgcccagcctggcataaactcctgacctcaactgatcctcccaccttgacttcccaaagtgctgggattacaagcgtgagccactgtgcccagcctgac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9935850 729 - 75148670 tcagttatattcttaatagcactaaaataaaaataactcaactgctcataaacaggagaatggatcaacaaactgtgacatgtttatgtaatggagtagtatgcaacaacaataaagaataaactgctggtactcacgacaccataaaaaaatctcaaaaacatattgagctgaagaagtcaggcacaaaacagtacaaacagtatgactacatttacattaacttcaagaataagaaaaactcatctttgacatagttagagatgagaatagtggttgtctctgtgggagagatgtgtcggctggaaagcagcaagaaagaatttctaaggttgatgttctacatgttgaaatgctattctgtatcttgatctgggtgttgattacacaagttcatgtgctttcaaactcgatgaagctgcctacttttatttttatttttagacacagggtctcactttgttgcccaggctggagtttagtagcatga--tcatagctcactgcagccttgaattactgggctcaagtggttttcccacctcagtttcccaagtagctgggactacaggcacatgccaccatgcctggctaatttaaaaaaa-tttttttagagatggggcctcattgtgttgcccagcctggcataaactcctgacctcaactgatcctcccaccttgacctcccaaagtgctgggattacaagcgtgagccactgtgcccagcctgac i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99522179 4082 + 122082543 I e calJac3.chr5 112809599 1642 + 159171411 I a score=89427.000000 s hg38.chr17_JH159146v1_alt 120778 33 + 278131 ctgcgcactttcaattgatgcatcttattgtct s panTro4.chr17 66241291 33 - 82630442 ctgcgcactttcaattgatgcatcttattgtct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24773418 33 - 73212453 ctgtgcactttcaattgatacatcttattgtct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47996422 33 - 81552678 ctgtgtgctttcaattgatgcatcttattgtct i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53100957 33 + 80904711 ctgcacactttcaattgatgcattttattgtct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52623992 33 + 80997621 ctgcacactttcaattgatgtattttattgtct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47668801 33 + 74645514 ctGCACACTTTCAATTGATGCATTTTATTGTCt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9936579 33 - 75148670 ctgcacactttcaattgatgcattttattgtct i chlSab2.chr16 C 0 C 0 s mm10.chr11 22557079 31 - 122082543 CTGCATATTTTCAATGGATGTATTTCATTAT-- i mm10.chr11 T 87594 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e calJac3.chr5 112809599 1642 + 159171411 I a score=1223871.000000 s hg38.chr17_JH159146v1_alt 120811 393 + 278131 gaaaattgtatctcaatAAAGTGGAGTTAACATAAAAAGTTAAGATTTGATACAACTGTGCAGCTGCATGAATGTTCACTACTTTATCTATATACTT------AaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactaaaataaaatataggagaatacttttaCAAATTCAGATGAGGAAGGCCTTTGTAACAGTGACTTGAAATTAAGAACCTGTAAAAAATACGATAAATTTGACTTCATAAAATAGCAGTGTTTGAAATAGTCCATTAGTTTGAAAATGTATGAAAAATACTGAAAGTAAATAAATCAAGAGGTTAGCAGTGAAATTC-TTTGCATTTTATAGTTACTGATGAATATTA----TTTTC----TTGTTTTTATT s panTro4.chr17 66241324 393 - 82630442 gaaaattatatctcaataaaGTGGAGTTAACATAAAAAGTTAAGATTTGATACAACTGTGCAGCTGCatgaatgttcactactttatctatatactt------aaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactaaaagaaaatataggagaatactttcacaaattcagatgaggaaggcctttgtaacagtgacttgaaattaagaacctgtaaaaaattcggtaaatttgactccataaaatAGCAGTGTTTGAAATAGTCCATTAGTTTGAAAATGTATGAAAAATACTGAAAGTAAATAAATCAAGAGGTTAGCAGTGAAATTC-TTTGCATTTTATAGTTATTGATGAATATTA----TTTTC----TTGTTTTTATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24773451 388 - 73212453 gaaaattatatctcaataaaGTGGAATTAACATAAAAAGTTAAGATTTGATACAACTGTGTAGCTGCatgaatgttcactactttatctatatactt------aaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcattaatgtact-----aaaatataggagaatacttttacaaattcagatgaggaagacctttgtaacagtgacttgaaattaagaacccgtaaaaaattcgataaattcgactccataaaatAGCAGTGTTTGAAATAGTCTGTTAGTTTGAAAATGTATGAAAAATACTGAAAGTAAATAAATCAAGAGGTTAGCAGTGAAATTC-TTTGCATTTTGTAGTTATTGATGAATGTTA----TTTTC----TTGTTTTTATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47996455 393 - 81552678 gaaaattatatctcaatAAGGTGGAATTAACATAAAAAGTTAATATTTGATACAACTGTGTAGCTGCATGAATGTTCACTACTTTATCTATATACTT------AaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactgaaagaaaatataggagaatacttttaCAAATTCAGATGAGGATGGCCTTTGTAACAGTGACTTGAAATGAAGAACCCGTAAAAAATTCGATAAATTTGACTCCATAAAATAGCAGTGTTTGAAATAGTCCATTAGTTTGAAAATGTATGaaaaatactgaaagtaaatacaccaagaggttagcagtgaaattc-tttgcattttgtagttattgatgaatgtta----ttttc----ttatttttATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53100990 392 + 80904711 gaaaattatatctcaataaCGTGGAATTAACATGAAAAGTTAATATTTGATacaactgtgtagctgcatgaatgttcactgctttatctatatactt------aaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactaaaagaaaatgcaggagaatacttttacaaattcagatgaggaagtcctttgtaacagtgacttgaaattaagaacccacaaaaaattcgataaattcgactccataaaatAGCAATGTTTGAAATAGTCCATTAGTCTGAAAATGTATTaaaaagactgaaagtaaatacatcaagaggttagcagtgaaattc-tttgcattttgtagttattgatgaatctta----ttttc----ttatgttt-tt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52624025 392 + 80997621 gaaaattatatctcaaTAACGTGGAATTAACATGAAAAGTTAATATTTGATACAACTATGTAGCTGCATGAATGTTCACTGCTTTATCTATATACTT------AaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactaaaagaaaatgcaggagaatacttttaCAAATTCAGATGAAGAAGTCCTTTGTAACAGTGACTTGAAATTAAGAACCCACAAAAAATTCGATAAATTCGACTCCATAAAATAGCAATGTTTGAAATAGTCCATTAGTCTGAAAATGTATTaaaaagactgaaagtaaatacatcaagaggttagcagtgaaattc-tttgcattttgtagttattgatgaatctta----ttttc----ttatgttt-tt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47668834 392 + 74645514 gaaaattatatctcaataacgTGGAATTAACATGAAAAGTTAATAATTGATACAACTGTGTAGCTGCATGAATGTTCACTGCTTTATCTATATACTT------AAATTACAAATGGATCAAAGATTCAAATGTGAAAAGTGAAAATCATAAATGTACTAAAAGAAAATGCAGGAGAATACTTTTACAAATTCAGATGAGGAAGTCCTTTGTAACAGTGACTTGAAATTAAGAACCCACAAAAAATTCGATAAATTCGACTCCATAAAATAGCAATGTTTGAAATAGTCCATTAGtctgaaaatgtattaaaaagacTGAAAGTAAATACATCAAGAGGTTAGCAGTGAAATTC-TTTGCATTTTGTAGTTATTGATGAatctta----ttttc----ttatgttt-tt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9936612 392 - 75148670 gaaaattgtatctcaaTAACGTGGAATTAACATGAAAAGTTAATATTTGATACAACTGTGTAGCTGCATGAATGTTCACTGCTTTATCTATATACTT------AaattacaaatggatcaaagattcaaatgtgaaaagtgaaaatcataaatgtactaaaagaaaatgcaggagaatacttttaCAAATTCAGATGAGGAAGTCCTTTGTAACAGTGACTTGAAATTAAGAACCCACAAAAAATTCGATAAATTCGACTCCATAAAATAGCAATGTTTGAAATAGTCCATTAGTCTGAAAATGTATTaaaaagactgaaagtaaatacatcaagaagttagcagtgaaattc-tttgcattttgtagttattgatgaatctta----ttttc----ttatgttt-tt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112811241 396 + 159171411 gaaAATTATATCTCAGTAAAGTAAGGTTAACATAAAAAGTTAAGATTtgatacaactgggtagctgcacggatgttcaatactttatccatatactt------aaactacaaatggatcaaagattcaaatgtgaaaagtggaagtcataaatgtactaaaagaaaataaaggtgaattattttacaaattcagatgaggaaggccattgtaacagtgacttgaaattaagaaactgtaaaaaatgcgataaattcgactccataaaatAGCAGTGTTTGCAATAGTCTATAAGTTTGAAAATGTATTaaaaagactcaaagaaactacatcaagaggttagcagtgaaattc-tttgcattttgtagttattgatgattgtta----ttttcttatttatgttt-tt i calJac3.chr5 I 1642 C 0 s mm10.chr11 22557110 353 - 122082543 --AAATTGAGCTCTAAGAGAACACAGTTAAAATTAGAAATTAAGATGTGCTACAAATGTACA----CAAGAA-----ACTTCCAAATAGATCAAATTCCAAAGAAATTCCAAATAGATCAAGCTCTCAAAAATAAAACGT--AAATCGCAAACATGCTAAAAAGGGA---------------------------ATGTGGAAGAACTTTGTGACAACAACTCAAAATTATGAATCTGTAAAATACT-GATAGGGGTCACT----------ACAATGCTTGAGACAATTTCTAATCTCATAGCTGTATAAAGAAGGCTAGAAGGAGACATATAACAGTACTAATGGTACCATTCTTTTGCAATTTGTAACTCTTCACGATAACTATCTTTTTTC----CCAtttttatt i mm10.chr11 C 0 I 470 e canFam3.chr9 39352413 5235 - 61074082 I a score=255649.000000 s hg38.chr17_JH159146v1_alt 121204 89 + 278131 CCACAAATTCCACAAATTGAATGTATCTCTTTTAGAATCATTAGAAAAATTGTCTGCAAAACT---GTTTCTGCTTCGTTAGTTTCTTAGAC s panTro4.chr17 66241717 89 - 82630442 CCACAAATTCCACAAATTGAATGTATCCCTTTTAGAATCATTAGAAAAATTGTCTGCAAAACT---GTTTCTGCTTCATTAGTTTCTTAGAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24773839 89 - 73212453 CCACAAATTCCACAAATTGAATGTATCCCTTTTAGAATCATTAGAAAAATTGTCCGCAAAACT---GTTTCTGCTTCATTAGTTTCTTAGAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47996848 89 - 81552678 CCACAAATTCCACAAATTGAATGTATCCCTTTTAGAATCGTTAGAAAAATTGTCCGAAAAACT---GTTTCTGCTTCATTAGTTTCTTAGAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53101382 89 + 80904711 atatgcattccacaaattGAATGTATCCCTTTTAGAATCATTACAAAAATTGTCCGAAAAACT---GTTTCTGCTTTGTTAGTTTCTTAGAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52624417 89 + 80997621 atatgcattccacaaattgaatgtatcccttttagaatcattacaaaaaTTGTCCGAAAAACT---GTTTCTGCTTCGTTAGTTTCTTAGAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47669226 89 + 74645514 atatGCATTCCACAAATTGAATGTATCCCTTTTAGAATCATTACAAAAATTGTCCGAAAAACT---GTTTCTGCTTCGTTAGTTTCTTAGAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9937004 89 - 75148670 atatgcattccacaaattgaatgtatcccttttagaatcattacaaaaaTTGTCCGAAAAACT---GTTTCTGCTTCGTTAGTTTCTTAGAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112811637 92 + 159171411 atatacatttcacaaattgaatgtatcccttttagaatcatcagaaaaaTTGACTGAAAACCTAACGTTTCTGCTTCGTTAGTTTTTCAGAG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 22557463 470 - 122082543 I a score=2067042.000000 s hg38.chr17_JH159146v1_alt 121293 635 + 278131 TTTTTTTCTGCCTCCATACCTTTCTA----ATAATTTTT------ATTCTTTTCCTCTTGTGTCTCACATGCAGAGTTGTTCCTTCCT----TGGCTGATTCCCTTTTGATTTCTTCAGGGCCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATCATTTTTTCTTTCCCTATAAGCACATCTGTTAACTGATCCTACA--ATGTCTGACCCGTAACCATGAGGCACTTCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTACTTATT-GTCTTTATTTTTCTACCACCAGGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACCACATTCTCCACTTTGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATATAGCTCCATTGCTGGTGCAGAAATGTTCAAC-CTTCCTACAGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCCACAATATTGACCCAGCTGACTTTATCTCATATTCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCTATTCCCCAAGCTCTTCCTGCCCTGTTCCCCCACTGCACATTT s panTro4.chr17 66241806 634 - 82630442 TTTTTTTCTGCCTCCATACCTTTCTA----ATAATTTTT------ATTCTTTTCCTCTTGTGTCTCACATGCAGAGTTGTTCCTTCCT----TGGCTGATTCCCTTTTGATTTCTTCAGGGCCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATCATTTTTTCTTTCCCTATAAGCACATCTGTTAACTGATCCTACA--ATGTCTGACCTGTAACCATGAGGCACTTCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAGACCTTTTGACAGAATAGTGGGTACTTATT-GTCTTTATTTTTCTACCACCAGGT----CATTTGTTAACTTTTGTCAATCTTGCTA-GCCTGTAAATTACTTTACCACATACTCCACTTTGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATATAGCTCCATTGCCGGTGCAGAAA-GTTCAAC-CTTCCTACAGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCCACAATCTTGACCCAGCTGACTTTACCTCATATTCCAGGACCCCTGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCTATTCCCCAAGCTCTTCCTGCCCCGTCCCCCCACTGCACATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24773928 637 - 73212453 TTTTTTTCTGCCTCCATACCTTTCTA----ATAATTTTT------ATTCTTTTCCTCTTGTGTCTCACATGCAGAGTTGTTCCTTCCT----TGGCTGATTCCCTTTTGATTTCTTCAGGGCCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATCATTTTTTCTTTCCCTATAAGCACGTCTGTTAACTGATCCTACAATATGTCTGACCCATAACCATGAGGCACTTCTTCCATGAACGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTACTTATT-ATCTTTATTTTTCTACCACCATGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACTACATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATATAGCTCCATTGCTGGTGCAGAAATGTTCAAC-CTTCCTACAGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCCACAATCTTGACCCAGCTGACTTTACCTCATATTCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATTCCCCAAGCTCTTCCTGCCCTGTCCCCTCACTGCACATTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47996937 641 - 81552678 ATTTTTTCTGCCTCCATACCTTTCTA----ATAATTTTT------ATTCTTTTCCTCTTGTGTCTCACATACAGAGTTGTTCCTTCCTTCCATGGCTGATTCCCTTTTGATTTCTTCAGGGCCACATTTCATCCATCATGCTC-CCCCTTTTCTTGCCTCTTTTATGTCTTCTTTACTACTGGATCATTTTTTCTTTCCCTATAAGCACGTCTGTTAACTGATCCTACAATATGTCTGACCCATAACCATGAGGCACTTCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTATTTATT-ATCTTTATTTTTCTACCACCAGGT----CATTTGTCAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACTACATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATATAGCTCTATTGCCGGTGCAGAAATGTTCAAC-CTTCCTACAGAGAGAGCAAGGTTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCCACAATCTTGACCCAGCTGACTTTACCTCATATTTCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATTCCCCAAGCTCTTCCTGCCCTGTCCCCCCACTGCACATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53101471 642 + 80904711 CTTTTTTCTGCTTCCACACCTTTCTA----ATAATTTTT------ATTCTGTTCCTCTTGTGTCTCACATGCAGAGTTGTTCCTTCTTTCCATGGCTGATTCCCTTTTGATTTCTTCAGGACCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATGATTTTTTCTTGCCCTATAAGCACGGCTGTTAACTGATCCTACAGTATGTCTGACCCATAGCCGTGAGGCACTCCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTATTTGTCAATCTTTATTTTTCTACCACCAAGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACTGCATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATACAGCTCCATTGCCGGTGCAGAAATGTTCATC-CTTCCTATGGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAGCCAAGACCCTCAACAATCTTGACCCAGCTGACTTTACCTCATATGCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATCCCCCAAGCTCTTCCTGCTCTGTCCCTCCACTGCACATTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52624506 642 + 80997621 CTTTTTTCTGCTTCCACACCTTTCTA----ATAATTTTT------ATTCTGTTCCTCTTGTGTCTCACATGCAGAGTTGTTTCTTCCTTCCATGGCTGATTCCCTTTTGATTTCTTCAGGACCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATGATTTTTTCTTGCCCTATAAGCACGGCTGTTAACTGATCCTACAGTATGTCTGACCCATAGCCATGAGGCACTCCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTATCAAACCTTTTGACAGAATAGTGGGTATTTGTCAATCTTTATTTTTCTACCACCAAGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACTGCATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATACAGCTCCATTGCCGGTGCAGAAATGTTCATC-CTTCCTATGGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAGCCAAGACCCTCAACAATCTTGACCCAGCTGACTTTACCTCATATGCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATCCCCCAAGCTCTTCCTGCTCTGTCCCTCCACTGCACATTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47669315 642 + 74645514 CTTTTTTCTGCTTCCACAcctttcta----ataattttt------attctgttcctCTTGTGTCTCACATGCAGAGTTGTTCCTTCCTTCCATGGCTgattcccttttgatttcttcaggACCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGatgattttttctttccctataaGCACGTCTGTTAACTGATCCTACAATATGTCTGACCAATAGCCATGAGGCACTCCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTATTTgtcaatctttatttttctaccaCCAAGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTAAATTACTTTACTGCATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATACAGCTCCATTGCCGGTGCAGAAATGTTCATC-CTTCCTATGGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCAACAATCTTGACCCAGCTGACTTTACCTCATATGCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATCCCCCAAGCTCTTCCTGCTCTGTCCCTCCACTGCACATTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9937093 642 - 75148670 CTTTTTTCTGCTTCCACACCTTTCTA----ATAATTTTT------ATTCTGTTCCTCTTGTGTCTCACATGCAGAGTTGTTCCTTCCTTCCATGGCTGATTCCCTTTTGATTTCTTCAGGACCACATTTCATCCATTATGCTC-CCCCTTTTCTTGCCTCTTTCATGTCTTCTTTACTACTGGATGATTTTTTCTTTCCCTATAAGCACGTCTGTTAACAGATCCTACAATATGTCTGACCCATAGCCATGAGGCACTCCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTACCAAACCTTTTGACAGAATAGTGGGTATTTGTCAATCTTTATTTTTCTACCACCAAGT----CATTTGTTAACTTTTGTCAATCTGGCTA-GCCTGTCAATTACTTTACTGCATACTCCACCTCGGAGATCTTCTTT----------------------------------------------ATCTACCTTCATACAGCTCCATTGCCGGTGCAGAAATGTTCAAC-CTTCCTATGGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAACCAAGACCCTCAACAATCTTGACCCAGCTGACTTTACCTCATATGCCAGGACCCCCGACCCACTCTATACATTCTAGCCCAACTGCATCCTTTGCCATCCCCCAAGCTCTTCCTGCTCTGTCCCTCTACTGCACATTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112811729 642 + 159171411 TTTTTTTCTGCTTCCATACCTTTCTGTCTTATAATTTTT------ATTCTTTTCCTCTTGTGTCTCACAAGCAGAGTTGTTTCTTCCTCCCATGGCTGATTCTCTTTTGATTTCTTCAGGGCAACATGTCATCCATCAGGCTCTCCCCTTTTCCTGCCTCCTTTATGTCTTCTTTACTATTGGATCATTTTTCCTTTCCCTATAAGCACGTCTGTTACCTGATCCTACAATATGTCTGACCCATAACCATAAGGCCCTTCTTCCATGAAGGTGGCTTCTGCCTTCTTTTCATTATCAAA-CTTCTGACAGAATAGTGGATATTTGTC-ACCTTTATTTTTCTGCCACCAGGT----CATTTGTTAACTTTTGTCAATCTGACTA-GCCTGT-AATCACTTTAATATATACTCCACCTTGGAGAGCTTCTTT----------------------------------------------ATCTACTGTCATACAGCTCCACTGCAAGTGCAGAAATGTTCAAC-CTTCCTGTAGACAGAGCAAGGCTCAAATTCTTGTTTGCCTGGCAATCAAGGCCCTCCACAGTCTCGACGCAGCTGACTTTACCTCATATTCCTGGACCCC-GACCCACTCCATCCATTCTAGCCCGACTGCATCCTTTGCCATTGCTCAA-CTCTTCCTGCCCTGTCCCTCCACTGCACATTT i calJac3.chr5 C 0 C 0 s mm10.chr11 22557933 628 - 122082543 TTTCTCTCTGCTTCCGT--CCTTTAA----GTCATTTCTCCCATGAGTCACTTCCTCGTGT--------TGTACTATTG--------------AACTGATTCGCCTTTGATTCCTGCAAAACCACAATCCATCCATTAA---C-TTCTTCTTCTGGCCTCTTCTGTGTCTCCTTTACTATGTGGTCAATTTTCCTTTCCCTGTAAGCATGTTTGTTTCCCATCCATAAAATCTGTCTTCCCTGTAGTCGAGAGGCTCTTCTTCCATGAAGGCATTGTCCTCCCTCTTTTTGTTG----------TGATAGAGCAGTGGGGATTTGTC-ATCACCA-TTTTCCATCACCAGCTAGAGCCTCTGTTCACTTTCAGCATTCTGGCTATGCC-----ATGGCTGTTCTACATAATCCACCTTGACGTGCTTCTTTGGCCTTCGTGAGCTAGTCAACAAACATAAAAGTTATAGGAATCTTAATCAACAAGCATATTAGTTTAGT----GTACAAAACTACTTAATGATTCCTATGGAACAAGC-----TCAGGTTCTTAGTTGCCTAGCAATGA-----TTGTACGGCCTGACCCTAGACAACCTTGTCCTGTA-ACTACTACCCCT-------------CATCCTACCGAAGTTGTATCCTCAGCTGTCTTCTATACTCTCCCTGCCTAGTCCTTCCACTGCACTTTt i mm10.chr11 I 470 n 470 e canFam3.chr9 39352413 5235 - 61074082 I a score=466865.000000 s hg38.chr17_JH159146v1_alt 121928 152 + 278131 ATTGTGGGGGTTCCCTCTA-CCTTTCTTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTC--GGGCTCACGCATAtctggttctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgcagttaggCAGGGTATTACC s panTro4.chr17 66242440 152 - 82630442 ATTGTGGGGGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGAAAGAGACTC--GGGCTCACGCATAtctggttctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgcagttaggCAGGGTATTATC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24774565 154 - 73212453 ATTGTGGGGGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTGTGGAAGAGACCCTAGGGCTCACGCATAtctggttctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgtagttaggCAGGGTATTACC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47997578 154 - 81552678 ATTGTAGGGGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTCTAGGGCTCATGCGTAtctgattctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgcagttaggCAGGGTATTACA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53102113 154 + 80904711 GTTGTTGGAGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTCTAGGGCTTACGCatatctggttctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgcaattaggCAGGGTTTTACC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52625148 154 + 80997621 GTTGTTGGAGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTCTAGGGCTTACGCATAtctggttctcctctccttttgggcacatgggaggcttaccctctcttgcccctttgcaattaggCAGGGTTTTACC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47669957 154 + 74645514 GTTGTTGGAGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTCTAGGGCTCACGCATATCTGGTTCTCCTCTCCTTTTGGGCACATGGGAGGCTTACCCTCTCTTGCCCCTTTGCAATTAGGCAGGGTTTTACC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9937735 154 - 75148670 GTTGTTGAAGTTCCCTCTA-CCTTTCCTCATCTGTGTGTTTCAAGGCTGTTCTGGAAGAGACTCTGGGGCTCACGCATATCTGGTTCTCCTCTCCTTTTGGGCACATGGGGGGCTTACCCTCTCTTGCCCCTTTGCAATTAGGCAGAGTTTTACC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112812371 155 + 159171411 ATTGTTGGGGTTCCCTCTACCCTTTCCTCATCTGTGTGTTTCAAGACTGTCCTGAAAGAGATTCTAGGGTTCATGCATATCTGGCTGTCCTCTCCATTTGGGCACATGGGAGACTTACTCTCCGTTGCCCCTTTGCAGTTAGGCAGGGTATTAGC i calJac3.chr5 C 0 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 22558561 470 - 122082543 I a score=246649.000000 s hg38.chr17_JH159146v1_alt 122080 87 + 278131 AAGGCTTTGTTTTCTGGTTCAAGATCTTTGGGCTGTCTCTTCCCTGCCCCAGGCACTGAGAAGGCAGC-TGTTCTAGAAG---------------------------------------------------------------T-----GCTTCTC s panTro4.chr17 66242592 87 - 82630442 AAGGCTTTGTTTTCTGGTTCAAGATCTTTGGACTGTCTCTTCCCTGTCCCAGGCACTGAGAAGGCAGC-TGTTCTAGAAG---------------------------------------------------------------T-----GCTTCTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24774719 87 - 73212453 AAGGCTTTGTTTTTTGGTTCAAGATCTTTGGGCTGTCTCTTCCCTGCCCCAGGCACTGAGAAGGCAGC-TGTTCTAGAAT---------------------------------------------------------------T-----GCTTCTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47997732 150 - 81552678 AAGGCTTTGTTTTCTGGTTCAAGATCTTTGGGCTGTCTCTTCCCTGCCCCAGGCACTGAGAAGGCAGC-TGTTCTAGAAGTGCTTCTCTCTTTTCTGTTCTTTTTTTGAGTGTCATTTTGGAGAATCGCAGCTGTTCTAGAAAT-----GCTTCTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53102267 87 + 80904711 AAGACTTTGTTTTCTGGTTCAAAATCTTTGGGCTGTCTCTTCCCTGCCCCAGGAACTGACAAGGCAGC-TGTTCTAGAAA---------------------------------------------------------------T-----Gcttctc i rheMac3.chr16 C 0 I 25 s macFas5.chr16 52625302 87 + 80997621 AAGACTTTGTTTTCTGGTTCAAAATCTTTGGGCTGTCTCTTCCCTGCCCCAGGAACTGACAAGGCAGC-TGTTCTAGAAA---------------------------------------------------------------T-----Gcttctc i macFas5.chr16 C 0 I 25 s papAnu2.chr16 47670111 87 + 74645514 AAGACTTTGTTTTCTGGTTCAAGATCTTTGGGCTGTCTCTTCCCTGCCCCAGGAACTGACAAGGCAGC-TGTTCTAGAaa---------------------------------------------------------------t-----gcttctc i papAnu2.chr16 C 0 I 130 s chlSab2.chr16 9937889 87 - 75148670 AAGGCTTTGTTTTCTGGTTCAAGATCTTTGGGCTGTCTCTTCCCTGCCCCAGGAACTGAGAAGGCAGC-TGTTTTAGAAA---------------------------------------------------------------T-----GCTTCTC i chlSab2.chr16 C 0 I 30 s calJac3.chr5 112812526 88 + 159171411 AAGGCTCTGTTGTCCGGTTGAAGACCTTTGGGCTGTCTCTTCCCTGCCACAGAAACTGAGAAGGCAGCACTTTCTAGAAG---------------------------------------------------------------T-----GCTTCTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99526261 76 + 122082543 AAGCCCTTGATTTCTGACTCAAGATTCTGGGA-----------------CAGGGAATGCTGAAGTGGTGTATGTTATGAG---------------------------------------------------------------TACAGGACTTCTA i mm10.chr11 I 4082 C 0 e canFam3.chr9 39352413 5235 - 61074082 I a score=856007.000000 s hg38.chr17_JH159146v1_alt 122167 269 + 278131 TCTTC------------TCTTTTC--TTTTTTTGAG--TGTCATTTTGGAGAATCTCAGCTGTAAAAACTCAAGTCCA--CACTG-CCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTG-CCCCTGT----CTTTCTGAGAAAGGGGTTGTGCACAACATAGGAAGAATGGGCACTGGGGCCAGCCTGAGACCAGTAGCTGAGTGATAGGAAGGCCTTATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGTAAATATTAAATTTACATAGA s panTro4.chr17 66242679 269 - 82630442 TCTTC------------TCTTTTC--TTTTTTTGAG--TGTCATTTTGGAGAATCTCAGATGTAAAAACTCAAGTCCA--CACTG-TCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTG-CCCCTGT----CTTTCTGAGAAAGGGGTTGTGCACAACATAGGAAGAATGGGCACTGGGGCCAGCCTGAGACCAGTAGCTGAGTGATAGGAAGGCCTTATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGTAAACattaaatttacataga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24774806 271 - 73212453 TCTTT------------TCTTTTC--TTTTTTTGAG--TGTCATTTTGGAGAATCTCAGCTGTAAAAACTCAAGTCCA--CACTGTCCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTCCCCTGT----CTTTCTGAGAAAGGGGCTGTGCACAACATAGGAAGAATGGGCACTGGGGCCAGCTTGAGACCAGTAGCTGAGGGATAGGAAGGCCTTATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGtaaatattaaatttacataga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47997882 271 - 81552678 TCTTT------------TCTGTTC--TTTTTTTGAG--TGTCATTTTGGAGAATCTCAGCTGTAAAAACTCAAGCCCA--CACAGTCCTGGAAGATCAAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTCCCCTGT----CTTTCTGAGAAAGGGGTTGTGCACAGCATAGGAAGAATGGGCACTGGGGCTAGCCTGAGACCAGTAGCTGAGGGATAGGAAGGCCTTATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGtaaatattaaatttacataga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53102379 283 + 80904711 tctcttctcttctcttctcttttc--ttTTTGTGAG--TGTCATTTTGGAGAATCTCAGCTGTCAAAATTGAAGTCCA--CACTGTCCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTGCCCTGT----CTTTCTGAGAAAGGGATTGTGCACAATATAGGAAGAATGGGCACTGGGGCCAGCCTGAGACTGGTAGCTGAGGGATAAGAAGGCCTCATCTGCCTCTGTAGAGCTAGTGAGGAATCCATGAATTGtaaatattaaatttacataga i rheMac3.chr16 I 25 C 0 s macFas5.chr16 52625414 271 + 80997621 tctct------------tcttttc--ttttTGTGAG--TGTCATTTTGGAGAATCTCAGCTGTCAAAATTGAAGTCCA--CACTGTCCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTGCCCTGT----CTTTCTGAGAAAGGGATTGTGCACAATATAGGAAGAATGGGCACTGGGGCCAGCCTGAGACTGGTAGCTGAGGGATAAGAAGGCCTCATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGTAAATATTAAATTTACATAGA i macFas5.chr16 I 25 C 0 s papAnu2.chr16 47670328 271 + 74645514 tcttt------------tcttttc--tttttgtgag--tgTCGTTTTGGAGAATCTCAGCTGTCAAAATTGAAGTCCA--CACTGTCCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTGCCCTGT----CTTTCTGAGAAAGGGATTGTGCACAATATAGGAAGAATGGGCACTGGGGCCAGCCTGAGACTGGTAGCTGAGGGATAAGAAGGCCTCATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGaattgtaaatattaaatttacataga i papAnu2.chr16 I 130 C 0 s chlSab2.chr16 9938006 271 - 75148670 tcttt------------tcttttc--ttttTGTGAG--TGTCATTTTGGAGAATCTCAGCTGTCAAAATTGAAGTCCA--CACTGTCCTGGAAGATCGAATCTGGAAGTGATAGAAAGTTCTCTTGACAGCTTTGTGCTCTGT----CTTTCTGAGAAAGGGATTGTGCACAATATAGGAAGAATGGGCACTGGGACCAGCCTGAGACTGGTAGCTGAAGGATAAGAAGGCCTCATCTGCCTCTGTAGAGCCAGTGAGGAATCCATGAATTGtaaatattaaatttacataga i chlSab2.chr16 I 30 C 0 s calJac3.chr5 112812614 271 + 159171411 TCTTT------------TCTTTTCTTTTTTTTTGAG--TGTCATTTTCAAGAATCTCATCTGTAAAAACTCTAGTCCA--CACTGCCCTGGAAGATCAAATCTGGAAGTGATAGAAAGT--TCTTGACAGCTCTGTCCTCTGT----CTTTCTAAGAAAGGGGTTGTGCACAACATAGGAAGAATGGGCACTAGGGCCAGCCTGAGCCCAGTAGCTGAGGACTAAGAAGGCCTTATCTGCCTCTGGAGAGCCAGTGAGGAATCCATGAATTGTAAATATTAAATTTACACTGA i calJac3.chr5 C 0 I 1284 s mm10.chr11 99526337 254 + 122082543 -------------TGCGTTTTCTC--TTTGTTTGGGCATGCCATTTTGGGATTTCTGAGTAGTAAAAGTGTATGTTCAACTTCTCTCCTGTAAGATTAAATCTGAGAGAAACGACAGGC-------ACAGCTTTGTTCTGGGTAGAACCTTCTGGGCAGAGG------------AGAGGGGAAGGTGGCTTAGCAGCCAGTCTGAGGTGAATAGCTGTGGGCTAGGCAGGGTCTAGCTCCTTCTATAGAGCCAGTAAGGGTTCCTTGAATTGTAAACAC---AATCATGTC-- i mm10.chr11 C 0 C 0 e canFam3.chr9 39352413 5235 - 61074082 I a score=105859.000000 s hg38.chr17_JH159146v1_alt 122436 43 + 278131 TTAAATATTTAAAATATTA-AATCTAATATTGTAAATA-TTAGAT s panTro4.chr17 66242948 43 - 82630442 ttaaatatttaaaatatta-aatctaatattgtaaata-ttaGAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24775077 43 - 73212453 ttaaatatttacaatatta-aatctaatattgtaaata-ttaGAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47998153 43 - 81552678 ttaaatatttaaaatatta-aatctaagattgtaaata-ttagat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53102662 43 + 80904711 ttaaatatttaaaatatta-aattcaatattgtaaata-ttaGAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52625685 43 + 80997621 TTAAATATTTAAAATATTA-AATTCAATATTGTAAATA-TTAGAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47670599 43 + 74645514 ttaaatatttaaaatatta-aattcaatattgtaaata-ttagat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9938277 44 - 75148670 ttaaatatttaaaatatta-aattcaatattgtaaatattTAGAT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99526591 41 + 122082543 TTATATA---AAAATATTATCAATCAACAATAGACACT-TTAGAT i mm10.chr11 C 0 I 10078 e canFam3.chr9 39352413 5235 - 61074082 I e calJac3.chr5 112812885 1284 + 159171411 I a score=2762908.000000 s hg38.chr17_JH159146v1_alt 122479 1187 + 278131 TTCTGAATCGTGGGCACttttt--------------tttttt---tttttttgagacggagtctcactctgtcgcccaggctggagtgcagtggcgcgatctcagcttactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacatgcgtgcaccactatgcctggttaatttttgtatttttagtggagac-ggggtttcaccatgttggccaggctggtctcaaactcctgacctcatgatctgcctgcctcagcctcccaaagtgctggggttagag--gtgtgtgccaccgcacctggccACATATATGTTTTCTTCACATGGGTGGTGCAATCAAAATATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCctaatttgttctccattcttataattgtgtcatttcaagaatgttatatacatagaattatcaaatatatggccctttgaattgccctttttcactcggcatgatggccttgagatCTTTAggacatttctgtgatctctagtttttggctattacaaacaaagctgctatgaacaattgtgcatctcttcaatccttttactttcaacctacctatattgttatattt------agctttttgcagaatgtatcgtacagttggatcatgcttttttatccactctgccaagatctgtc-ttttttct-atgtctttagactctttccacttgctgtaattttctatatttagcctgtattgtatttattgtattctgtttgttcattctgttttttgtttgtttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctatagtgttttttagtatacctattggcatagctttttaaatagttgctctgggtatttcatgctgtatgcatagcttaccatagtctaccagtgttaacgttttatcagtttaagtgaagtgtggaaaactcgcctttgtttatattcctttactcgcctccattttaatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccatgaaacataatttagaaaactcaggaggagaaagaaatttatttaaattaatcatatattaattttttattatatttt s panTro4.chr17 66242991 1180 - 82630442 TTCTGAATCGTGGGCACttttt--------------tttttt----------gagacagagtctcactctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacatgcgtgcaccactatgcctggttaatttttgtatttttagtagagac-ggggtttcaccatgttggccaggctggtctcaaactcctgacctcgtgatctgcctgcctcagcctcccaaagtgctggggttagag--gtgtgtgccaccgcacccggccACATATATGTTTTCTTCACATGGGTGGTGCAATCAAAATATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCctaatttgttctccattcttataattgtgtcatttcaagaacgttatatacatagaattatcaaatatatggccctttgaattgccctttttcactcggcatgatggccttgagatCTTTAggacatttctgtgatctctagtttttggctattacaaacaaagctgctatgaacaattgtgCATCTCttcaatccttttactttcaacctacctatattgttatattt------agctttttgcagaatgtatcgtacagttggatcatgcttttttatccactctgccaagatctgtc-ttttttct-atgtctttagactctttccatttgctgtaattttctatatttagcctgtattgtatttattgtattctgtttgttcgttctgttttttgtttgtttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctatagtgttttttagtatacctattggcatagctttttaaatagttgctctgggtatttcatgctgtatgcatagcttaccatagtctaccagggttaacgttttatcagtttaagtgaagtgtggaaaactcacctttgtttatattcctttactcgcctccattttaatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccatgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcgtatattaattttttattatatttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24775120 1197 - 73212453 TCCTGAATCGCGGGCACttttt--------------ttttttttttttttttgagacggagtctcactctgtcgcccaggctggagtgcagtggcatgatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctgtctcagcctcccaagtagctgggattacatgcgtgcaccactatgcctggttaatttttgtatttttagtagagac-ggggtttcaccatgttggccgcgctggtcccaaactcctgacctcgtgatctgcccgcctcagccttccaaagtgctggggttagaggcgtgtgtgccaccgcacccagccATATATATGTTTTCTTCACATGGGTGGTGCAATCAAAATACGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTACGCctaatttgttctccattcttataattgtgtcatttcaagaacgttatatacatagaattatcaaatatatggccctttgaattgccctttttcacttggcacgatggccttgagatCTTTAggacatttctgtgatctctagtttttggctattacaaacgaagctgctatgaacaattgtacatctcttcaatcctttcactttcaacctacctatattgttatatttgaagtgagctttctgcagaatgtatcgtacagttggatcatgcttttttatccactctggcaagatctgtc-tttttttg-atgtctttagactctttccatttgctgtaattttctatatttagcctgtattttatttattgtattctgtttgttccttctgttttttgtttgtttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctatagtgtttttgagtatacctattggcatagctttttaaatagttgctctaggtatttcatgctgtatgcataacttatcatagactactagtgttaacgttttatcggcttaagtgaagtgtggaaaacttacctttgtttatattcctttactcgcttccattttaatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccatgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcatatattaattttttattaca-tgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 47998196 1191 - 81552678 GCCTGAATCGTGGGCACttttt--------------tttttt----ttttttgaggcggagtcttcctctgtcgcccaggctggagtgcagtggcttgatctcagctcactgcaacctctgccttcagggttcaagcaattctcctgccttagcctcccaagtagctgggattacatgtgtgcaccactatgcctggttaagttttgtatttttagtagagac-ggggttttaccgtgttggctgggctggtcttgaactcctgacctcgtgatctgcccgcctcagcctcccaaagtgctgtggttagag--gcgtgagccaccacacccggccATATTTATGTTTTCTTCACATGGGTGCTGCAATCAAAATATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTACGCctaatttgttctccatgcctataattgtgtcatttcaagaatgttatatacatagaattatcaaatatatggccctttgaattgacctttttcactcggcacgatagccttgagatCTTt-ggacatttctgtgatctctagtttttggctattacaaa-aaagctgctatgaacaattgtgcatctcttcaatccttttactttcaacctacctatattgttatatttgaactgagctttttgcagaatgtattgtacagttggatcatgcttttttgtccactctgccaagatctgtc-ttttttttgatgtctttagactctttccatttgctgtgattttctatatttagcccgtattttatttattgtattctgtttgttccttctgttttttgtttgtttctctatattctttttcctgcctttctgtgggttacttgaatatgctttggagttccattttgatttatctatagtgtttttgagtgtacctattggcatagtttttaaaatagttgctctaggtgtttcatgctgtatgcataacttaccatagtctactagtgttaacattttatcagtttaagtgaagtgtggaaaactcacctttgtttatattcctttactcgactccattttaatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccatgaaacataatttagaaaactcaggaagaaaaagaaatttatttaaattaaccatatattaattttttattatatttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53102705 1191 + 80904711 TCCTGAATCATGTGTGCGTCttcttcttcttcttc-ttcttt---tttttttgagacgaattctcgctctgttgcccaggctggagtgcagtggcgcg-----ggctcactgcaagctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctga----------gtacaccactatgcctggctaatttttgtatttttagtagagacgggggtttcaccatgtgggccaggctggtctcgaactcctgacctcatgatctgcctgcctcaacctcccaaagtgctggggtcagag--gtgcgacccaccgcacctggccATATATATATTTTCTTCACATGGGTGGTGCAATCAAACTATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCctaatttgttctccatttctataattgtgtcattttaagaacgttatatacatagaattatcaaatatatggccctttgaattgcccattttcactcggcatgctggccttgagatCTTTAggacatttctgtgatctctattttttggctattataaacaaaactgctatgaacaattgtgcatctcttccatccttttactttcgacctacctgtatcgttatatgtgaagtgagctttttgcagaatgtatcatatagttgggtcatgcttttttatccactttgccaagatctgtc-ttttttttgatgtctttagactcttcccatttgctgtaattttcgatatttagcc-gtattttatttactgtattttgtttgttccttctgttttttgtttctttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctgttatgtttttgagtacacctattggcatagcttttaaaatagttgctctaggtgtttcatgctgtatgcataacttaccatagtctactagtgttaacgttttatcagtttaagtgaagtgtggaaaacttgcctttgtttatattccattactcgcctccattttgatacaattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccacgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcatatattaa-tttttattatatttt i rheMac3.chr16 C 0 I 2004 s macFas5.chr16 52625728 1198 + 80997621 TCCTGAATCATGTGTGCGTCttcttcttcttcttcttttttt---tttttttgagacgaattctcgctctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctga----------gtacaccactatgcctggctaatttttgtatttttagtagagacgggggtttcaccatgtgggccaggctggtctcgaactcctgacctcatgatccgcctgcctcaacctcccaaagtgctggggtcagag--gtgcgagccaccgcacctggccATATATATATTTTCTTCACATGGGTGGTGCAATCAAACTATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCctaatttgttctccatttctataattgtgtcatttcaagagcgttatatacatagaattatcaaatatatggccctttgaattgcccattttcacttggcatgctggccttgagatCTTTAggacatttctgtgatctctattttttggctattataaacaaaactgctatgaacaattgtgcatctcttccatccttttactttcgacctacctgtatcgttatatgtgaagtgagctttttgcagaatgtatcatatagttgggtcatgcttttttatccactttgccaagatctgtctttttttttgatgtctttagactcttcccatttgctgtaattttcgatatttagcc-gtattttatttactgtattttgtttgttccttctgttttttgtttctttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctgttatgtttttgagtacacctattggcatagcttttaaaatagttgctctaggtgtttcatgctgtatgcataacttaccatagtctactagtgttaacgttttatcagtttaagtgaagtgtggaaaacttgcctttgtttatattccattactcgcctccattttgatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccacgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcatatattaa-tttttattatatttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47670642 1194 + 74645514 tCCTGAatcatgtgtatgtcttcttcttcttct---tttttt---tttttttgagacgaattctcgctctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctga----------gtacaccactatgcctggctaatttttgtatttttagtagagacgggggtttcaccatgtgggccaggctggtctcgaactcctgacctcatgatccgcctgcctcaacctcccaaagtgctggggttagag--gtgcgagccaccgcacctggccatatatatattttcttcacatGGGTGGTGCAATCAAACTATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCCTaatttgttctccatttctataattgtGTCATTTCAAGAACGTTATATACATAGAATTATCAAATATATGGCCCTTTGAATTGCCCATTTTCACTCGGCATGCTGGCCTTGAGAGCTTTAGGACATTTCTGTGATCtctattttttggctattataaacaaaactgctatgaacaattgtgcatctcttccatccttttactttcgaCCTACCTGTATCGTTATATGTGAAGTGAGCTTTTTGCAGAATGTATCATATAGTTGGGTCATGCTTTTTTATCCACTTTGCCAagatctgtc-ttttttttgaTGTCTTTAGACTCTTCCCATTTGCTGTAattttcgatatttagcc-gtattttatttactgtattttgtttgttccttctgttttttgtttctttctctgtattctttttcctgcctttctgtGGGTTACTTGAATATGCTTTAGAGTTCCATTTTGATTTATCTGTTATGTTTTTGAGTACACCTATTGGCATAGCTTTTAAAATAGTTGCTCTAGGTGTTTCATGCTGTATGCATAACTTACCATAGTCTACTAGTGTTAATGTTTTATCAGTTTAAGTGAAGTGTGGAAAACTTGCCTTTGTTTATATTCCATTACTCGCCtccattttaatataattgtcttaaatattttctacacATATATTGAGAACCACATCAGACAGTGTTATACTTCTTGCCTCAACCAcgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcatatattaa-tttttattatttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9938321 1192 - 75148670 TCCTGAATCATGTGTACttcttctttttttt-----tttttt---tttttttgagacgaattctcgctctgttgcccaggctggagtgcagtggtgcgatcttggctcactgcaagctctgcctcctgggctcaagcgattctcctgcctcggcctgctgagtagctga----------gtacaccactatgcctggctaatttttgtatttttagtagagacgggggtttcaccatgtgggccaggctggtctcgaactcctgacctcatgatccgcttgcctcaacctcccaaagtgctggggttagag--gtgtgagccaccgcacccagccATATATATATTTTCTTCACATGGGTGGTGCAATCAAACTATGGAACTATTCAATCACCACAGAGCTTTCCTTTGTCCTATGCctaatttgttctccatttctataattgtgtcatttcaagaacgttatatacatagaattatcaaatatatggccctttgaattgcccattttcactcggcatgctggccttgagatCTTTAggacatttctgtgatctctgttttttggctattataaacaaaactgctatgaacaattgtgcatctcttccttccttttactttcgacctacctgtatcgttatatgtgaagtgagctttttgcagaatgtatcatatagttgggtcatgcttttttattcactttgccaagatctgtc-ttttttttgatgtctttagactcttcccatttgctgtaattttcgatatttagcc-gtattttatttactgtattccgtttgttccttctgttttttgtttctttctctgtattctttttcctgcctttctgtgggttacttgaatatgctttagagttccattttgatttatctgttatgtttttgagtacacctattggcatagcttttaaaatagttcctctaggtgtttcatgctgtatgcataacttaccatagtctactagtgttaatgttttatcagtttaagtgaagtgtggaaaacttgcctttgtttatattccattactcgcctccattttaatataattgtcttaaatattttctacacatatattgagaaccacatcagacagtgttatacttcttgcctcaaccatgaaacataatttagaaaactcaggaagagaaagaaatttatttaaattaatcatatattaa-tttttattatatttt i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99526632 10078 + 122082543 I e calJac3.chr5 112812885 1284 + 159171411 I a score=97687.000000 s hg38.chr17_JH159146v1_alt 123666 59 + 278131 ttcctgtctgatcttccaagtttccttattttatagttttgtttgtgtttagggaattt s panTro4.chr17 66244171 59 - 82630442 ttcctgtctgatcttccaagtttccttattttatagtttcgtttgtgtttagggaattt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24776317 57 - 73212453 ttcctgtctgatctt-caggtttccttattttatagttttgtttgtg-ttaaagaattt i ponAbe2.chr17 C 0 I 29 s nomLeu3.chr19 47999387 59 - 81552678 ttcctgtctgatcttccaagtttcctcattttatagtttcgtttgtgtttagggaattt i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52626926 59 + 80997621 ttcctgtctgatcttccacatttccttattttatagtttcgtttgtgtttagagaactt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47671836 59 + 74645514 ttcctgtctgatCTTCcacatttccttattttatagtTTCGTTTGTGTTTAGAGAACCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9939513 59 - 75148670 ttcctgtctgatcttccacatttccttattttatagtttcgtttgtgtttagataactt i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99526632 10078 + 122082543 I e calJac3.chr5 112812885 1284 + 159171411 I e rheMac3.chr16 53103896 2004 + 80904711 I a score=37008.000000 s hg38.chr17_JH159146v1_alt 123725 31 + 278131 tctttagtcattgttttaggttggtttgctg s panTro4.chr17 66244230 31 - 82630442 tctttagtcattgttttaggttggtttgctg i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47999446 31 - 81552678 tctttagtcattgttttagattggtttgctg i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52626985 31 + 80997621 tctttagtcatcattttaggttggtttgctg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47671895 31 + 74645514 TCTTTAGTCATCATTTTAGGTTGGTTTGCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9939572 28 - 75148670 tctttag---tcattttaggttggtttgctg i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24776374 29 - 73212453 I e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99526632 10078 + 122082543 I e calJac3.chr5 112812885 1284 + 159171411 I e rheMac3.chr16 53103896 2004 + 80904711 I a score=183298.000000 s hg38.chr17_JH159146v1_alt 123756 157 + 278131 gccacatcttttaagtttccttcatctgagaatgtcttgatttctctt-------tggttttctgaacgatattttcaaagggtatataaatctgggttgacagtttctttctctctttcttt------------ctttctttctttcttccttccttcctttccttcttcttttc s panTro4.chr17 66244261 150 - 82630442 gccacatcttttaagtttccttcatctgagaatgtcttgatttctctt-------tggttttctgaac---attttcaaagggtatataaatctgggttgacagtttctttctctcTCTCTCT------------ctttctttctttcttccttcctt----tccttcttcttttc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24776403 166 - 73212453 nnnnnnnnntttaagtttccttcatctgagaatgtcttga-ttctcttaaaaaaaagattttctgaacgatattttcaaagggtatataaatctgggttgacaaattctttccctttctttctttc---------ctttctttctttctttctttctttctttctttctttctttc i ponAbe2.chr17 I 29 C 0 s nomLeu3.chr19 47999477 169 - 81552678 gccacatcttttaagcttccttcatctgagaatgtcttgatttctctt-------tgattttctgaacgatattttcaaaggttatgtaaatctgggttgacagtttctttccttttctttctttctttctttttctttctttctttcttcctttctttcttccttttttcttttc i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52627016 157 + 80997621 gtgacatcttttaagtttctttcgtctgagaatgtcttgatttctctt-------tgatcttctgaatgatattttccaagggtatataaatttgggttgacagtttctttctCccttccttc------------cttccttccttccttccttccttccttccttccttccttcc i macFas5.chr16 C 0 M 2897 s papAnu2.chr16 47671926 135 + 74645514 GTGACatcttttaagtttcttttgtctgagaatgttttgatttctctt-------tgaTCTTCTGAATGATATTTTCCAAGGGTATATAAATTTGAGTTGAcagtttctttctcccttccttc------------cttccttccttccttcttc---------------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9939600 117 - 75148670 gtgacatcttttaagtttctttcatctgagaaggtcttgatttctctt-------tgatcttctgaacgatattttccaagggtatataaatttgggttgacagtttcttcctccctcccttc------------c---------------------------------------- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99526632 10078 + 122082543 I e calJac3.chr5 112812885 1284 + 159171411 I e rheMac3.chr16 53103896 2004 + 80904711 I a score=2255.000000 s hg38.chr17_JH159146v1_alt 123913 12 + 278131 cttccttccttc s panTro4.chr17 66244411 12 - 82630442 cttccttccttc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24776569 12 - 73212453 tttctttctttc i ponAbe2.chr17 C 0 I 777 s nomLeu3.chr19 47999646 12 - 81552678 tttctttctttt i nomLeu3.chr19 C 0 I 4 s papAnu2.chr16 47672061 4 + 74645514 ----cctc---- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9939717 6 - 75148670 --tccctc---- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99526632 10078 + 122082543 I e calJac3.chr5 112812885 1284 + 159171411 I e macFas5.chr16 52627173 2897 + 80997621 M e rheMac3.chr16 53103896 2004 + 80904711 I a score=69795.000000 s hg38.chr17_JH159146v1_alt 123925 180 + 278131 cctccctcccttccttcattccttccttcctttccttcttcttttccttccttccttc--ccttcctccctccctccctccttccttcgttccgtccctccctccctcctttcttttcttcttttcttttctcttttctt-tttccttctttctttccttc-cttc-cttctcttctctt---------------------ctttc s panTro4.chr17 66244423 203 - 82630442 cctccctcccttccttcattccttccttcctttccttcttcttttccttccttccttc--ccttcctctctccctccctccttccttcattccatccctccctccctcctttcttttcttcttttcttttctcttttctt-tttccttctttccttccttctcttctcttttcttttctttctttctttctttctttctttctttc i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 47999662 186 - 81552678 tttctctttcttccttccttccttccttccttttcttcttcttttccttccttccttcttccttccctccccctccctccctcccttcattccttccttccatcctttccttcttcttttccttccttccttccttccttccttccttccttccttccttc-cttc-cttctcttctttc------------------tttctttc i nomLeu3.chr19 I 4 I 2 s papAnu2.chr16 47672065 147 + 74645514 cctccctccctccctcc-ttccttccttccttcc---------ttcctttctttcttt--ctttctctctttctctctttctctctttctctctttctctctttctctctttctctctttctctctttctttctttcttt-ctttctttctttctttctt---------------------------------------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9939723 143 - 75148670 cctccctccctcccttcgttccttccttccttcc---------ttccttccttccttc--cttccttccttccttccttccttcct---tctttttccttctttcttttttctttcctttccttctttccctccctcctt-c--ccttccttccttcctc---------------------------------------------- i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24776581 777 - 73212453 I e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99526632 10078 + 122082543 I e calJac3.chr5 112812885 1284 + 159171411 I e macFas5.chr16 52627173 2897 + 80997621 M e rheMac3.chr16 53103896 2004 + 80904711 I a score=871888.000000 s hg38.chr17_JH159146v1_alt 124105 746 + 278131 t--ctttctttctttct---ctctctctctttgtttctctttcctttccttccctcc--------------------------------------------------ctccctctctccctcccttccttcctt----tttctttttt--gtcttgctctgtcacccaggctggagtgcagtggcacgatctctgctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccgccaccgcacccagcaaatttttgtattttcagtagagatggggtttcaccatgttggccaggatggtctcgatctcttgaccttgtaatccatcctccttggcctcccaaagtgctgggattacaggtgtgagtcaccacgcctggccGACAGTTTT---ttttttt--------------cttttagcatttgaaaactattgtattacttcatattggcttccatggtttatggtgacatacctgccatcaattaaattgttttcttctattggtaaggtgtcatttctctctcactgctttcataattttttttgtctttagc-tttcaaaagtttgaatatgatatttcctggtgtagatttcttagggtttatcatttttggggtttgcttggtttctggaatctgtaggtttttgtcttttgccatatttgt-aaattttcagtgtttattccttcaaatgtttttggcttcactttttctcctcccttacagaactccactgacatgaatgttagatcg-tttgatatagccccaaaattccctga s panTro4.chr17 66244626 755 - 82630442 tttctttctttctttct-ttctctctctctctctttctctttcctttccttccctcc--------------------------------------------------ctccctctctccctcccttccttccttcctttttctttttt--gtcttgctctgtcacccaggctggagtgcagtggcacgatctttgctcactgcaacctccgcctcccaggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggtgcccgccaccgtgcccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctcttgaccttgtaatccgtcctccttggcctcccaaagtgctgggattacaggtgtgagtcaccacgcctggcTGACAGTTTT---TTttttt------------ttcttttagcatttgaaaactattgtactacttcatattggcttccatggtttatggtgacatacctgccatcaattaaattgttttcttctattggtaaggtgtcatttctctctcactgctttcataattttttt-gtctttagc-tttcaaaagtttgaatatgatatttcctggtgtagatttcttagggtttatcatttttggggtttgcttggtttctggaatctgtaggtttttgtcttttgccatatttgt-aaattttcagtgtttattccttcaaatgtttttggcttcactttttatcctcccttacagaactccgctgacatgaatgttagatca-tttgatatagccctaaaattccctga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24777358 751 - 73212453 --tctttctttctttct---ttctttctct-tctctctctttcctttctttccctcc--------------------------------------------------ctccctc-ctccctcccttccttccttcctttttttttttttggtcttgctctgtcacccaggctagagtgtagtggcgcgatctctgctcactgcaacctccgcctcctgggttcaagcga-tctcctgcctcagtctcctgagtagctgggattacaggtgcctgccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggatggtctcgatctcttggccttgtgatccgtcctccttggcctcccaaagtgctgggattacaggcgtgagtcaccgtgcctggccAACAGTTTT---TTTtttt-----------tttcttttagcatttgaaaactattgtactacttcatattggcttccatggtttatggtgacatacctgccatcaattaaattgttttcttctattagtaagatgtcatttctctct--ctgctttcataattttttttatctttagt-tttcaaaagtttgaatatgatatttcctggtgtagatttctttgggtttatcaattttggggtttgcttagtttctggaatctgtaggtttttgtcttttgccatatttgtaaaattttcagtgtttattccttcaaatgtttttggcctcactttttctcctcccttacagaattccactgacatgaatgttagatcg-tttgatatagccccaaagttccgtga i ponAbe2.chr17 I 777 C 0 s nomLeu3.chr19 47999850 755 - 81552678 --tctttctttctttcttttctctctctctttcttttatttctttctctttcctttc--------------------------------------------------cttccccccctccttccttccttccttcctttttctttttt--gtcttgctctgtcacccaggttggagtgcagtggcgcgatctctgctcactgcaacctctgcctcctgggttcaagcaattctcctgcctcagtctcccgagtagctgggattacaggttcacgccaccacacccagctaatttttgtctttttagtagagacggggtttcaccatgttggccaggatggtcttgatctcttgaccttgtgatctgtcctccttggcctcccaaagtgctgggattaca-gcgtgagtcaccgcgcctggccGACAGTTTT---TTTTttt----------ttttcttttagcatttgaaaactattgtactacttcatattggcttccatggtttatggtgacatacctgccatcaattaaattgttttcttctattggtaaggtgtcatttctctctcactgctttcataatttttt--gtctttagt-tttcaaaagttttaatatgatatttcctggtgtagatttctttgggtttatcatttttggggtttgcttggtttctggaatctgtaggtttttgtcttttgccatatttgtaaaattttcagtgtttattccttcaaatgtttttggcttcactttttctcctcccttacagaactcctctgacatgaatgttagatcg-tttgatatagccccaaagttccctga i nomLeu3.chr19 I 2 C 0 s papAnu2.chr16 47672212 799 + 74645514 --tctttctttctttct---ttctttcttcttctt------------------cttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttccttccttccttcctgcctgccttc---ccttttttct--gtcttgctctgtcacccaggctggagtgcagaggcatgatctctgctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtgcccgccatcatgcccagctattttttgtatttttggtagagacagggtttcaccatgttggccaggatggtctcgatctcttgaccttttGATCcatcttccttggcctcccaaagtgctgggattacaggtgtcagtcactgcgcctggccgacagttttttgtttttgtttttgtttttttttcttttagcatttgaAAACTGTCGTCCTACTTCATATTGGCTTCCATGGTTTATGGTGACAGACCTGCCAtcaattaaattgttttcttctattggtaaggtgtcatttctctctcactgctttcataatttgttttgtctttagtaATTCAAAAGTTTGAATATGATATTTCCTGGTGTAGATTTCTTTGGATTTATAATTTTTGGGGTTTGCTTGGTTTCTGGAATCTGTAGGTTTTTGTCTTTTgccatatttgtaaaattttcagtgtttattccttcaaatatttttggcCTCACTTTTTCTCCTCCCTTACAGAACTCCGTTGACATGAATGTTAGATCGTTTTGATATAGCCATAAAGTTCCCTGA i papAnu2.chr16 C 0 I 589 s chlSab2.chr16 9939866 738 - 75148670 --ccttccttccttcct---tccttcctgcctgc-------------------------------------------------------------------------ctgcctgcctgccttccttcctgcctt----ccttTTTTTT--gtcttgctctgtcacccaggctggagtgcagaggcatgatctctgctcactgcaacctctacctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtgcccgccatcatgcccagctattttttgtatttttggtagagacagggtttcaccatgttggccaggatggtctcgatctcttgaccttttgatccatcttccttggcctcccaaagtgctgggattacaggtgtcagtcactgcgcctggccgatagtttt---tttttttttttttttttttttcttttagcatttgaaaactgtcgtcctacttcatattggcttccatggtttatggtgacagacctgccatcaattaaattgttttcttctattggtaaggtgtcatttgtctctcactgctttcataatttgttttgtctttagt-attcaaaagtttgaatatgatatttcctggtgtagatttctttgggtttataatttttggggtttgcttggtttctggaatctgtaggtttttgtcttttgccatatttgtaaaattttcagtgtttattccttcaaatgtttttggcctcactttttctcctcccttacagaactccgctgacatgaatgttagatcg-tttgatatagccataaagttccctga i chlSab2.chr16 C 0 I 313 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99526632 10078 + 122082543 I e calJac3.chr5 112812885 1284 + 159171411 I e macFas5.chr16 52627173 2897 + 80997621 M e rheMac3.chr16 53103896 2004 + 80904711 I a score=969392.000000 s hg38.chr17_JH159146v1_alt 124851 416 + 278131 gactctatctttttaacacta-ttttttttcc-gtttttcaggtcggatgatgtctattattgtatcatcaaattccctgatgttttcctctctggcctg--cattctgctgttaagcccatctccattgaggtttctattttggttctatggtatgtttcagttctgaaatttccactggagtctttccatcttcttc---attgagtcttctctatttttgcatttgttgtaagagtttattgaagcattgcttactgaagcatttttatgatgactatttaaaaatcattgtcaataagtaaaatagtgtaactggatgtttgtaacaccaaagatacatgcttgaggggatggacaccccattctcc---atgtgattattacacattgcatgcctgtgtcaaatcatctcatgtaccccat s panTro4.chr17 66245381 420 - 82630442 gactctatctttttaacacta-tttttttttctgtttttcaggtcggatgatgtctattattgtatcatcaaattccctgatgttttcctctctggcctg--cattctgctgttaagcccatctccattgaggtttctattttggttctacggtatgtttccgttctgaaatttccactggagtccttccatcttcttcttcattgagtcttctctatttttgcatttgttgtgagagtttattgaagcattgcttactgaagcatttttatgatgactgtttaaaaatcattgtcaataagtaaaatagtgtaactggatgtttgtaacaccaaagatacatgcttgaggggatggacaccccattctcc---atgtgattattacacattgcatgcctgtgtcaaatcatctcatgtaccccat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24778109 420 - 73212453 gactctatctttttaacacta-tttttttttctgtttttcaggtcggatgatgtctattattgtatcatcaaattcgctgatgttttcctctctggccag--cattctgctgttaagcccatctccattgaggtttctattttggttctctggtatgtttcagttctgaaatttctactggagtctttccatcttcttcttcactgagtcttttctatttttgcatttgttgtaagggtttattgaagcattgcttattgaagcatttttatgatgactgtttaaaaaccattgtcaataagtaaaagagtgtaactggatgtttgtaacaccaaagatacatgcttgaggggatagacaccccattctcc---atgtgattattacgcattgcatgcctgtgtcagatcatctcatgtacctcat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48000605 417 - 81552678 gactctatctttttaacacta-tttttttttctgtttttcaggtcggatgatgtctattattgtatcatcaaattccctgatgttttcctctctggcctg--cattctgctgttaagcccgtctccactgaggtttctcttttggctctatggtatgtttcagttctgaaatttccactggagtctttccatcttcttc---attgagtcttctctacttttgcatttgttgtaagagtttattgaagcattgcttattgaaggatttttatgatgactgtttaaaaatccttgtcaataagtaaaagagtataactggatgtttgtaacaccaaagatacatgcttgaggggatggacaccccattctcc---atgtgattattacacattgcatgcctgtgtcaaatcatctcatgtaccccat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53105900 416 + 80904711 gactctatctttttaacacta-ttttttttcctgtttttcaggtcagatgatgtctattattgtatcatcaaattccctgatgttttcctgtctggcctgtctgttctgctgttaagcccatctgcactgaggtttctattttggttctatggtatgtttcagttctgaaatttccactggagtctttccatcttcttcttcactgagacttttctgtttttgcatttgttataagagtttattgaagcattgcttattgaagcatttttgtgatgaccgtttaaaaatgcttgtcaataagtaaaagagtataactggatgtttgtaacaccaaagatgcgt---------gatggataccctatttattctcatgtgattattacacattgtatacctgtatcaaaatatgtaatgtacccata i rheMac3.chr16 I 2004 C 0 s macFas5.chr16 52630175 425 + 80997621 GACTCTATCtttttaacacta-ttttttttcctgtttttcaggtcagatgatgtctattattgtatcatcaaattccctgatgttttcctgtctggcctgtctgttctgctgttaagcccatctgcactgaggtttctattttggttctatggtatgtttcagttctgaaatttccactggagtctttccatcttcttcttcactgagacttttctgtttttgcatttgttataagagtttattgaagcattgcttattgaagcatttttgtgatgactgtttaaaaatgcttgtcaataagtaaaagagtataactggatgtttgtaacaccaaagatgcatgcttgaggggatggacaccccattcttcatgatgtgattattacgcattgcatgcctgtatcaaatcatctcatgtaccccat i macFas5.chr16 M 2897 C 0 s papAnu2.chr16 47673600 423 + 74645514 gacTCTATCTttttaacactatttttttttcctgtttttcaggTCAGATGATGTCTATTATTGTATCATCAAATTCCCTGATGTTTTCCTGTCTGGCctgtctattctgctgttaagcCCATCTGCACTGAGGTTTCTATTTTGGTTCTATGGTATGTTTCAGTTCTGAAATTTCCACTGGAGTCTTTCCATCTTCTTCTTCACTGagacttttctgtttttgcatttgttataAGAGTTTATTGAAGCATTGCTTATTGAAGCATTTTTGTGATGACTGTTTAAAAATGCTTGTC---AagtaaaagagtataactggatgtTTGTAACACCAAAGATgcatgcttgaggggatggacaccccattcttcatgatgtgattattacgcattgcatgcctgtatcaaatcatctcatgtaccccat i papAnu2.chr16 I 589 C 0 s chlSab2.chr16 9940917 425 - 75148670 gactctatctttttaacacta-ttttttttcctgtttttcgggtcagatgatgtctattattgtatcctcaaattccctgatgttttcctgtctggcctgtctattctgctgttaagcccatctgcactgaggtttctattttggttctatggtatgtttcagttctgaaatttccactgaagtctttccatcttcttcttcactgagacttttctgtttttgcatttgttataagagtttattgaagcattgcttattgaagcatttttgtgatgactgtttaaaaatgcttgtcaataagtaaaagagtataactggatgtttgtaacaccaaagatgcatgcttgaggggatggacaccccattcttcatgatgtgattattacgcattgcatgcctgtatcaaatcatctcatgtaccccat i chlSab2.chr16 I 313 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99526632 10078 + 122082543 I e calJac3.chr5 112812885 1284 + 159171411 I a score=2587485.000000 s hg38.chr17_JH159146v1_alt 125267 867 + 278131 aaatatatacatc---tatgtacccagaaaaataacaaataaaaagttaaaaacccttgtcagttaattctaacgtctttttcctcttgatgtttgaatttgttgatcatcttttttcctgtaagttgagattttatgatccttggtataaagagcaattgttgattgaaacctggacattggggcattatgttatgagattcaggatactgtttaatcttatgttctagcaggtctcctctgacactgttttggcaggggaagggggacactgcttcattcctaccaggtgggagtagaaatacaggttctctccactttgcccctattgacacccaaggggagagcccccctcatcactgctgggagggaggattttagactccttacctggcctctgctgataccaccctggcc-aggaggggcaggaatatcttgttattgctcccatgcagcttccactgacactgcat-gggg-gtggccttggtactgctggaggagggaaagagttctgactgtccagtaggactcttgtgacactaa-ccccagaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggcttcccgtgtggtctccactgataccatgatggtgggac-----------agggagtgcttccatgtctcatagtaggaatgaaagtcctggatctctcacttagccttccctgattccaccccagtggtgaagtttgagtgccttattacagcctgggaaggatagaagtctggactccccacctggcctttccttgtgtggatatgggtgggtgaaatgatattttctgtggtgtttggctgagttgagtggttattgtctaaaggttttccgcctttctaggc s panTro4.chr17 66245801 862 - 82630442 aaatatatacatc---tatgtacccagaaaaataacaaataaaaagttaaaaacccttgtcagttaattctaacatctttttcctcttgatgtttgaatttgttgatcatcttttttcatgtaagttgagattttatgatccttggtataaagaggaattgttgattgaaacctgggcattggggcattatgttatgagattcaggatactatttaatcttatgttctagcagacctcctctgacactgttttggtaggggaagggggacactgcttcattcctaccaggtgggagtagaaatacaggttctctccactttgcccctattgacacccaaggggagggccccccttatcactgctgggagggaggattttagactccttacgtggcctctgctgataccaccctggcc-aggaggggcaggaatatcttgttattgctcccatgcagcttccactgacactgcat-gggg-gtggccttggtactgctggaggagggaaagagttctgactgtccagtaggactcttgtgacactaa------gaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggcttcccgtgtggtctccactgacaccatgatggtggggc-----------agggagtgcttccatgtctcatagtaggaatgaaagtcctggatctctcacttagccttccctgatttcaccccagtggtgaagtttgagtgccttattacagcctgggaaggatagaagtctggactccccacctggcctttccttgtgtggatatgggtgggtgaaatgatattttctgtggtgtttggctgagttgagtggttagtgtctaaaggttttccgcctttctaggc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24778529 866 - 73212453 aaatatatacatc---tatgtacccagaaaaatatgaaataaaaagttaaaaacccttgtcagtgaattctgacgtctttttcctcttgatgttggaatttgttgatcatcttttttcatgtaagttgagattttatgatcctaggtataaagagcaattgttgattgaaacctggacattggggcattatgttatga-atagaggatactatttaatcttctgttctggcaggtctcctctgacactgttttggtaggggaagggggacgctgcttcattcctaccaggcgggagtagaaatacaggttctctccactttgcctctattgacacccaaggggacag-ccccctcatcactgctgggagagaggattttagactccttacctggcctctgctgataccaccctggcc-aggaggggcaggaatatcttgttattgctcccatgcagcttccactgacactgcatggggg-gtggccttggtactgctggaggagggaaagagttctgactgtccagtaggccttttgtgacactaa-ccccagaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggctccctgtgtggtctccactgacaccgtgatggtgggac-----------agggagtgcttccatgtctcatagtaggaatgaaagtcctggatctctcacttagccttccctgactccaccccagtagggaagtttgagtgccttgttacagcctgggaaggatagaagtctggattccctacctggcctttcctggtgtggatatgggtgggtgaaatgatattttctgtggtgtttggctgagttgagtggttattgtctaaaggttttctgcctttctaggc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48001022 868 - 81552678 aaatatatacatc---tatgtacccagaaaaataagaaataaaaagttaaaaacccttgtcagttaattctaacgtctttttcctcttgatgttggaatttgttgatcatcttttttcatgtaagttgagattttatgatccttggtataaagagcaattgttgattgaaacctggacactggggcattatgttatgagattcaggatactatttaatcttctgttctagcaggtctcctctgacactgttttggtaggggaagggggacactgcttcattcctaccaggtgggagtagaaatacaggttctctccactttgcccctattgacacccaaggggagagcccccctcatcactgctgggagggaggattttagactcctcacctggcctctgctgataccaccctggcc-aggaagggcaggaatattttgttattgctcccatgcagcttccactgacactgcatggggg-gtggccttggtactgctggaggagggaaagggttctaactgtccagtaggactcttgtgacactaa-ccccagaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggcttctcgtgtggtctccactgacaccatgatggtgggac-----------agggagtgcttccatgtctcatagtaggaatgaaagtcctggatctctcacttagccttccctgactccaccccagtggggaagcttgagtgccttgttacagcctgggaaggatagaagtctggactccccacctggcctttcctggtgtggatatgagtgggtgaaatgatattttctgtggtgtttggctgagttgagtggttaatgtctaaaggttttctgcctttctaggc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53106316 865 + 80904711 gcatatatacacctagtatgtacccagaaaaataaaaaataaaaagttaaaaacccttgtccgttcattctaacatctttttcctcttgatgttggaatttgttgatcatcttttttcatgtaagttgagattttatgatccttggtatgaagagtaattgttgattgaaacctggacattggggcattatgttatgagattcaggatattatttaatcttctgttctggcaggtctcctctgacactgttttggtaggggaagggggacactgcttcattcctaccaggtgggattagaaatagaggttctctccactttgcccctattgacacccaaggggagagcccccctcatcacggctgggagggaggattttagactccttatctggcctctgctgataccacccgggcc-aggaggggcaagaatatcttgttattgctcccatgcag------ctgacactgcatggggg-gtggccttggtactgctggaggagggagagagtcctgactgtccagtaggcctcctgtgacactaaaccccagaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggcttcccgtgtggtctccactgacaccatggtggtggggc------------ggaggtgcttccatgtctcttagcaggaatgaaagtcctggatctctcacttacctttccctgactccaccccagtggggaagtttgagtgccttgttacagcctgtgaaggatagaagactggactccctccctggccttttctggtgtggatatgggtgggcaaaatgatattttcggtggtgtttggctgagttgagtggttgttgtctaaaggttttctgcctttctaggc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52630600 861 + 80997621 aaatatatacatc---tatgtacccagaaaaataaaaaataaaaagttaaaaacccttgtccgttcattctaacatctttttcctcttgatgttggaatttgttgatcatcttttttcatgtaagttgagattttatgatccttggtatgaagagtaattgttgattgaaacctggacattggggcattatgttatgagattcaggatattatttaatcttctgttctggcaggtctcctctgacactgttttggtaggggaagggggacactgcttcattcctaccaggtgggattagaaatagaggttctctccactttgcccctattgacacccaaggggagagcccccctcatcacggctgggagggaggattttagact-cttatctggcctctgctgataccacccgggcc-aggaggggcaagaatatcttgttattgctcccatgcag------ctgacactgcatggggg-gtggccttggtactgctggaggagggagagagtcctgactgtccagtaggcctcctgtgacactaaaccccagaggagaaaagaagagcctcactgcagcctgtagagttaagtccaggcttcccgtgtggtctccactgacaccatggtggtggggc------------gggggtgcttccatgtctcttagcaggaatgaaagtcctggatctctcacttacctttccctgactccaccccagtggggaagtttgagtgccttgttacagcctgtgaaggatagaagactggactccctccctggccttttctggtgtggatatgggtgggcaaaatgatattttcggtggtgtttggctgagttgagtggttgttgtctaaaggttttctgcctttctaggc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47674023 862 + 74645514 aaatatatacatc---tatgtacccagaaaaataaaaaataaaaagttaaaaaccctTGTCCATTCATTCTAACATCTTTTTCCTCTTGATGTTGGAATTTGTTGATCATCTTTTTTCATGTAAGTTGAGATTTTATGATCCTTGGTATGAAGAGTAATTGTTGATTGAAACCTGGACATTGGGGCATTATGTTATGAGATTCAGGATATTATTTAATCTTCTGTTCTGGCAGGTCTCCTCTGACACTGTTTTGGTAGGGGAAGGGGGACACTGCTTCATTCCTACCAGGTGGGATTAGAAATAGAGGTTCTCTCCACTTTGCCCCTATTGACACCCAAGGGGAGAGCCCCCCTCATCACGGCTGGGAGGGAGGATTTTAGACTCCTTATCTGGCCTCTGCTGATACCACCTGGGCC-AGGAGGGGCAAGAATATCTTGTTATTGCTCCCATGCAG------CTGACACTGCATGGGGG-GTGCCCTTGGTACtgctggaggagggagagagtcCTGACTGTCCAGTAGGCCTCCTGTGACACTAAACCccagaggagaaaagaagagcctcactgcagcctgtagAGTTAAGTCCAGGCTTCCCGTGTGGTCTCCACTGACACCATGGTGGTGGGGC------------GGGGGTGCTTCCATGTCTCTTAGAAGGAATGAAAGTCCTGGATCTCTCACTTACCTTTCCCTGACTCCACCCCAGTGGGGAAGTTTGAGTGCCTTGTTACAGCCTGCGAAGGATAGAAGACTGGACTCCTTCCCTGGCCTTTTCTGGTGTGGATATGGGTGGGCAAAATGATATTTTCGGTGGTGTTTGGCTGAGTTGAGTGGTTGTTGTCTAAAGGTTTTCTGCCTTTCTAGGc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9941342 862 - 75148670 aaatatatacatc---gatgtacccagaaaaataaaaaataaaaagttaaaaacctttgtccgttaattctaacatctttttcctcttgatgttggaatttgttgatcatcttttttcatgtaagttgagattttatgatccttggtatgaagagtaattgttgattgaaacctggacattggggcattatgttatgagattcaggatattatttaatcttctgttcttgcaggtctcctctgacactgttttggtaggggaagggggacgctgcttcattcctaccaggtgggattggaaatagaggttctctccactttgctcctattgacacccaaggggaaagcccccctcatcacggctgggagggaggattttagactccttacctggcctctgctgataccacccgggcc-aggaggggcaagaatattttgttattgctcccatgcag------ctgacactgcatggggg-gtggccttggtactgctggaggagggagagagtcctgactgtccagtaggcctcctgtgacactaaaccccagaggagaaaagaagagcctcgctgcagcctgtagagttaagtccaggcttcccgtgtggtctccactgacaccaaggtggtggggc------------ggggatgcttccatgtctcttagcaggaatgaaagtcctggatctctcgcttacccttccctgactccaccccagtggggaagtttgagtgccttgttacagcctgcgaaagatagaaggctggactccctccctggcctttcctggtgtggatatgggtgggcaaaatgatattttcggtggtgtttggctgagtcgagtggttgctgtctaaaggttttctgcctttctgggc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112814169 877 + 159171411 AAATATATACATCTACTATGTACCCAGAAAAATAAAAAATAAAAAGTTAaaaacccttgtcagttaattctaacatctttttcctcttgatgttggaatttgttgattgtcttttctcatgtaagttgagattttatggtccttggtatgaagagcaatttttgatcgaaacctggatgttggggtattatgtcataaaattcaggttattatttaatcttccgttctagctggt---ctctgacactgttttggtaggggaa-ggggatgctgcttcattcctaacaggcgggagtggaaatacaggttctcttcactttgcctctgtggacacccaaggggaggg--ctcctcatcactgctgggaggggggattttagactccttacctgacctctgcagataccaccctggccgggggggggcagaaataacttggtattgcttccatgcagattccactgacactgcatgggggagtggccttggtactgctgggggagggaaagagtcctggctgtccagcaggcctcttgtgacactag-ccctagagaagaagag-agagcctcactgcagcctgcagaggtaagtctggactgcctgtgtgatctccactgacaccgtggtggtggtggtggtggtggaaggggggtgcttccacatctcgtagcaggaatgaaagtcctggatctctcacttagccttccctgactccaccccagtggggaagtttgagtgccttgtgacagcctgggaaggacagaagtctggactggctacctggcctttcctggtgtggataggggtgggcgaaaggacattttctgtggtgtctggctgagttgagtggttactgtcttaaggttttctgtctttctaggc i calJac3.chr5 I 1284 C 0 e canFam3.chr9 39352413 5235 - 61074082 I e mm10.chr11 99526632 10078 + 122082543 I a score=1306096.000000 s hg38.chr17_JH159146v1_alt 126134 400 + 278131 tgcctcttttctggttctt----taagcagagcaagctcttt-----------------------------------------------------ctg-----tttgtttgtttgtttgttt----tgtctgcacctgttggtgtttct-ggttgttggtttctccagctccc-cctctgggatatatgagataaaaagctaatccagggagctcaccacagtgtcactcctggagtctcaacatctttaggtggtttggcttcttcttctacctttcagagtcctcttatgtttatttgatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaatata---------catcATTCTGGA-----AGTTCTCTACCTTGTTTTTTAAATATATGAGAATAATTATTCTTATAACCTAAATGTCCAATAACAGATCAATGTACCTTATGGTACATTATGCAACCAGTAAAATGATGG s panTro4.chr17 66246663 404 - 82630442 tgcctcttttctggttctt----taagcagagcaagctcttt-----------------------------------------------------ctg-----tttgtttgtttgtttgtttgttttgtctgcacctgttggtgtttct-ggtagttggtttctccagctccc-cgtctggaatatatgagataaaaagctaatccagggagctcaccacagtgtcactcctggagtctcaacatctttaggtggtttggcttcttcttctacctttcagagtcctcttatatttatttgatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaatata---------catcATTCTGGA-----AGTTCTCTACCTTGTTTTTTAAATATATGAGAATAATTATTCTTATAACCTAAATGTCCAATAACAGATCAATGTACCTTATGGTACATTATGCAACCAGTAAAATGATGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24779395 392 - 73212453 tgcctcttttctggttctt----taagtagagcaagctcttt-----------------------------------------------------ttg-----tttgtttgttt------------tgtttgcacctgttggtgtttct-ggttgttggtttctccagctccc-actctgggatatacgagataaaaagctaatccagggagcccaccacagtgtcactcctggggtctcaacatctttaggtggtttggcttcttcctctacctttcagagtcttcttacgtttatttgatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaatata---------catcATTCTGGA-----AGTTCTCTACCTTGTTTCTTAAATGTATGAGAATAATTATTCTTATAACCTAAATGTCCAATAACAGATCAATGCACCTTATGGTACATTATGCAACCAGTAAAATGATGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48001890 397 - 81552678 tgcctcttttctggttctt----taagcagagcaagctcttt-----------------------------------------------------ctg-----tttgtttgtttgttc--------tgtctgcacctgttggtgtttct-ggttgttggtttctccagctcccttttctgggatatatgagataaaaagctaatccagggagcccaccacagtgtcactcctggggtctcaacatctttaggtggtttggctgcttcttctacctttcagagtcctcttatgtttatttgatttgtaatttctagggttt----------ttagg----------atgaggaatatggaaatata---------catcATTCTGGA-----AGTTCTCTACCTTGTTTTTTAAATGTATGAGAATAATTATTCTTataacctaaatgtccaataacagatcaatgtaccttatggtacattatgcaaccagtaaaatgatgg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53107181 444 + 80904711 tgcctcttttttggttcct----taagcagagcaagctcttccctttctaggctgcctcttttttggttctttaagcagagcaagctcttctggttgg-----tttgtttgttt------------tgtctgcacctattggtgtttct-ggttgttggtttgtccagctccc-actctgggatttatgagataaagagttaatccagggagcccaccacagtgtcactcctggggtctcaatatctttaggtggtttggcttcttcttctacctttcagagtcttcttatgtttattcgatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaaTAGA----------ATCATTCTGGA-----AGTTCTCTACCTTGTCTCTTAAATGTATGAGAATAATTATTCTTataacctaaatgtccaataacagatcaatgcaccttatggtacattatgcaaccattaaaatgatgg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52631461 391 + 80997621 tgcctcttttttggttctt----taagcagagcaagctcttc-----------------------------------------------------tgg-----tttgtttgttt------------tgtctgcacctattggtgtttct-ggttgttggtttgtccagctccc-actctgggatttatgagataaagagttaatccagggagcccaccacagtgtcactcctggggtctcaatatctttaggtggtttggcttcttcttctacctttcagagtcttcttatgtttattcgatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaaTAGA----------ATCATTCTGGA-----AGTTCTCTACCTTGTCTCTTAAATGTATGAGAATAATTATTCTTataacctaaatgtccaataacagatcaatgcaccttatggtacattatgcaaccattaaaatgatgg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47674885 391 + 74645514 tgcctcttttttggttctt----taAGCAGAGCAAGCTcttc-----------------------------------------------------tgg-----tttgtttgttt------------tgtctgcaCCTATTGGTGTTTCT-GGTTGTTGGTTTCTCCAGCTCCC-ACTCTGGGATTTATGAGATAAAGAGTTAATCCAGGGAGCCCACCACAGTGTCATTCCTGGGATCTCAATGTCTTTAGGTGGTTTGGCTCCTTCTTCtacctttcagagtcttcttaCGTTTATTCGATAGGTAATTTCCAGGGTTT----------TTAGG----------AGGAGGAATATGGAAATATA----------ATCATTCTGGA-----AGTTCTCTACCTTGTCTCTTAAATGTATGAGAATAATTATTCttataacctaaatgtccaataaCAGATCAATGCACCTTATGGTACATTATGCAAGCAGTAAAATGATGg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9942204 391 - 75148670 tgcctcttttttggttctt----taagcagagcaagctcttc-----------------------------------------------------tgg-----tttgtttgttt------------tgtctgcacctattggtgtttct-ggttgttggtttgtccagctccc-actctgggatttatgagataaagagttaatccagggagcccaccacagtgtcactcctggggtctcaatatctttaggtggtttggctccttcttctacctttcagagtcttcttatgtttattcaatatgtaatttccagggttt----------ttagg----------aggaggaatatggaaaTATA----------ATCATTCTGGA-----AGTTCTCTACCTTGTCTCTTAAATGTATGAGAATAATTATTCTTATTacctaaatgtccaataacagatcaatgcaccttatggtacattatgcaaccagtaaaatgatgg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112815046 415 + 159171411 tgctgcttttctgattctttagctaagcagagcaagctcttc-----------------------------------------------------ctg-----tttatttgttt------------tgtctgcacctgttggtgtttct-ggttattggtttctccagctccc-actttgggatatatcagataaaaagataatccagggagcccaccacagtgtcactcctggggtctcaatacctttaggtggtttgccttcttcgtctacctttcagagccttcttatgtttattttatatgtagtttccagcattt----------ttaggtagacttggaaggaggaatatggaaatatgcacctacttcatcattctgga-----agTTCTCTACCTTGTTTCTTAAATGTATGAGAATAATTATTCTTATAACCTAAATGTCCAGTAACAGACCAATGCACCTTATGGTACACTATGCAACCAGTAAAATGATGG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39357648 401 - 61074082 tacctctcttcaagtccct----tgact--------ctcctc-----------------------------------------------------TTGGAGATTTTGttt-ttc------------tgtctgcccctgctggtatttatgggttgttggtttcttcagctccc-aacatgggatatatgaggccaaaagaaaacccaaggaactcgct----tgctgttccttgaat----atgattctagttggtttgg---cttcttccacctttcagaatctgcttatatttcttttatatgtaatttccctggttttcagccagacttagg----------aagaggaatgaggaaatgtacatccatttcatttttttggaggtggagttctccactttgctttttaaATGTGTATGAATAATTATTCTTATACCCCAAATGTCCAATAACAGGCCAATA-ACCTTatggtattttatgtagccactaaaataacag i canFam3.chr9 I 5235 C 0 e mm10.chr11 99526632 10078 + 122082543 I a score=22204.000000 s hg38.chr17_JH159146v1_alt 126534 7 + 278131 CTACAgg s panTro4.chr17 66247067 7 - 82630442 CTACAgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24779787 7 - 73212453 CTACAgg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48002287 7 - 81552678 ctacagg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53107625 7 + 80904711 ctacagg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52631852 7 + 80997621 ctacagg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47675276 7 + 74645514 ctacagg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9942595 7 - 75148670 ctacagg i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39358049 7 - 61074082 tcacagg i canFam3.chr9 C 0 C 0 e mm10.chr11 99526632 10078 + 122082543 I e calJac3.chr5 112815461 0 + 159171411 C a score=542878.000000 s hg38.chr17_JH159146v1_alt 126541 286 + 278131 ctgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaagctggtggatcacaagg-------tca------------------------------agagattgagaccatcctggctaacacggtgaaaccctgtctctactaaaaaa-------------------------------------aaaaaaaaa------------ttagcctggtgtggtggcagacacctgtagtcccagctacttgggaggctg--------------------------------------aggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagcccagatagtgtgactacactccagcctgggtgacacagcaagactctgtctcaaaaaa s panTro4.chr17 66247074 283 - 82630442 ctgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaagctggtggatcacaagg-------tca------------------------------agagattgagatcatcctggctaacacggtgaaaccctgtctctactaaaaaa-------------------------------------aaaaaaaaa-----------attagcctggtgtggcggcacacacctgtagtcccagctacttgggaggctg--------------------------------------aggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagcccagatag----actgcactccagcctgggtgacacagcgagactctgtctcaaaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24779794 298 - 73212453 ctgggtgcggtggctcacacctgtaatcccagcactttgggaggctgaggtgggaggatcacaagg-------tca------------------------------ggagatcgagatcatcctggctaacacggtgaaaccctgtctctactaaaaaa-------------------------------------aaaaaaaaaaacaataaaaaattagcctggtgtggtggcacatgcctgtagtctcagctactcgggaggctg--------------------------------------aggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagcccagatagtgtgactgcactccagcctgggcgacacagtgagactctgtctcaaaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48002294 287 - 81552678 ctgggtgctgtggctcacacctgtaaacccagcactttgggaggctgaagctggtggatcacaagg-------tca------------------------------ggagatcgagaccat-ctggctaacacggtgaaaccctgtctctactaaaaaa-------------------------------------acaaaacaa--------aaaattagcctggtgtggtggcacacacctgtagtcccagctactcgggaggctg--------------------------------------aggaaggagaatcgcttgaacccgggaggcagaggttgcagtgagctgagatagtgcgactgcactccagcctgggcgacacagcaaga--ctgtctcaaaaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53107632 309 + 80904711 ctgggtgcggtggctcatgcctgtaatcccagcactttgggaggctgaggtgggcggatcacaaggaccttgatcacaaggtca----------------------ggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatagcgcgactgcactccagcctgggcgacacagggagactttgtctcaaatta i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52631859 326 + 80997621 ctgggtgcggtggctcatgcctgtaatccctgcactttgggaggctgaggtgggcggatcacaagg-------tcaggagatcgagaccatcctggctaacatggtgaagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaaa------------------------------------aaaaaaaaaa---tacaaaaaattagcctggcgtggtggcatgcacctgcagtcccagctactcgggaggctg--------------------------------------aggcaggagaaccgcttgaacctgggaggtggaggttgcagtgagccgagatagcgcgactgcactccagcctgggcgacacagggagactttgtctcaaatta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47675283 300 + 74645514 ctgggtgcagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggcggatcacaggg-------tca------------------------------ggagatcgagaccatcgtggctaacatggtaaaaccctgtctctacttaaaaa------------------------------aacaataaaacagaaa---aacaaaaaattagcctggcatggtggcgcatgcctgtagtcccagctactccggaggctg--------------------------------------aggtaggagaatctcttgaacccgggaggtggaggttgcagtgagctgagacagcgccactgcactccagcctgggcgacacagtgagactttgtctcaaa--a i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9942602 295 - 75148670 ctgggtgtggtggctcatgcctgtaatcccagcactttgggaggctgaggtgggcggatcacaagg-------tca------------------------------ggagatcgagaccattctggctaacatggtgaaaccctgtctctactaaaaaa-------------------------------------aaaaaaaaa---tacaaaaaattagcctggcgtggtggcatgcacctgtagtcccagctactcgggaggctg--------------------------------------aggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccaagatagcgcgactgcactccagcctgggcgacacagggagactttgtctcaaatta i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39358056 0 - 61074082 C e mm10.chr11 99526632 10078 + 122082543 I e calJac3.chr5 112815461 0 + 159171411 C a score=16644.000000 s hg38.chr17_JH159146v1_alt 126827 32 + 278131 aaaataaaaa--------ataaaa-----aaaGTGATGGCTACAA s panTro4.chr17 66247357 25 - 82630442 aaaaaaaaaa--------a------------aGTGATGGCTACAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24780092 18 - 73212453 aaaa---------------------------aGTGATGACTACAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48002581 28 - 81552678 aaaaaaaaaa--------aaaa---------agtgatggctacaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53107941 37 + 80904711 aaaaacaaaacaaacaa-acaaaa-----aaa--aatggctacaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52632185 39 + 80997621 aaaaacaaaacaaacaa-acaaaa-----aaaacaatggctacaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47675583 29 + 74645514 aaaaaaaaaa----------aaaa-----aaagtgat-gctaCAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9942897 40 - 75148670 aaaaacaaaatcaacaacaaaaaa-----aaaatgatggctacaa i chlSab2.chr16 C 0 C 0 s mm10.chr11 99536710 37 + 122082543 AGATTAAATA--------ATGCAACTGCTAAAATGTTGAGTACAG i mm10.chr11 I 10078 C 0 e canFam3.chr9 39358056 0 - 61074082 C e calJac3.chr5 112815461 0 + 159171411 C a score=3276.000000 s hg38.chr17_JH159146v1_alt 126859 1 + 278131 T s panTro4.chr17 66247382 1 - 82630442 T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24780110 1 - 73212453 T i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48002609 1 - 81552678 t i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53107978 1 + 80904711 t i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52632224 1 + 80997621 t i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47675612 1 + 74645514 T i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9942937 1 - 75148670 t i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112815461 1 + 159171411 T i calJac3.chr5 C 0 C 0 e canFam3.chr9 39358056 0 - 61074082 C e mm10.chr11 99536747 0 + 122082543 C a score=3785500.000000 s hg38.chr17_JH159146v1_alt 126860 1065 + 278131 ACAATCTTATGTTTTTATTAGAATTAAAAATGCTTAGATGACATAAATGAAAGAA--AGTTTACACAAGTGTGTGCATATGTTAGTATGATTATAGCTGTGTGGAAAAATCTATTATAagaaagaaaactggaagaaagtaccccaaaatattgactatggctgtttggaagatgaaatcataagtgaccttttcccttttaatgagcc-aa-atttaaaaaaaga--gaatctagtacttttataat--caa----aaaaTACATTTTATCATATTTTATTCCTAATATTTTTCCTCAGAAAGATACACACAACTATTTTCTAAGATATATGACATTTCTCATGGGTTCATTAATTTATTTGTATTTGAGGAGTTAAAAAATATTTTCAGCCTGGGTTTATGTACATTGAAACTATGGTTATGGGTTTAGATGATTTCCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGCCATAGAGCTATATTTACCACGCTAAAGGAATAAAACAC---GTTTTATTTGGAGATGAGCAAGAATGCTTTATGGGCTTCCAGTATACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATACCTGGAGGGCAATTCCAGGATATGAGAGCCT----------------------------------------C-CTG-----------GATTTGTGCTTCCGGTTTGGATGTC-CCTGGTTGAAGCCCCATCTCCTTTCTAGGATGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAGCAGCAGTTTTCAACAGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGCTACAGGAAAGCCTGGGGAAAAATCGATTTTCAACCAAGATTAACAAGGG-AATGTTGATAAAATGGCAACTCAGAAAA-ACCGTGTCAAAATTTGCCCTACAAATTATGTTCTGAAAAAAACTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCTGCACCCAGA------------ATTGCCACT--TCATGTTCACTGTAGCAGTGGCAGTTGAATAGT--ATTTTATATTTTTTCTTGATTTTGCAAATGTTATCT s panTro4.chr17 66247383 1065 - 82630442 ACAATCTTATGTTTTTATTAGAATTAAAAATGCTTAGATGACATAAATGAAAGAA--AAATTACACAAGTGTGTGCATATGTTAGTATGATTATAGATGTGTGGAAAAATCTATCGTAagaaagaaaactggaagaaagtaccccaaaatattgactatggctgtttggaagatgaaatcataagtgaccttttcccttttaatgagcc-aa-atttaaaaaaaga--gaatctagtgcttttataat--caa----aaaaTACATTTTATCCTATTTTATTCCTAATATTTTTCCTCAGAAATATACACACAACTATTTTCTAAGATATATGACATTTCTCATGGGTTCATTAATTTATTTGTATTTGAGGAGTTAAAAAATATTTTCAGCCTGGGTTTATGTACATTGAAACTATGGTTATGGGTTTAGATGATTTCCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGCCATAGAGCTATATTTACCATGCTAAAGGAATAAAACAC---GTTTTATTTGGAGATGAGCAAGAATGCTTTATGGGCTTCCAGTATACCACAAATAAGCTGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATACCTGGAGGGCAATTCCAGGATATGAGAGCCT----------------------------------------C-CTG-----------GATTTGTGCTTCCGGTTTGGATGTC-CCTGGTTGAAGCCCCATCTCCTTTCTAGGATGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAACAGCAGTTTTCAACAGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGCTACAGGAAAGCCTGGGGAAAAATCGATTTTCAGCCAAGCTTAACAAGGG-AATCTTGATAAAATGGCAACTCAGAAAA-ACCGTGTCAAAATTTGCCCTACAAATTATGTTCTGAAAAAAACTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCTGTACCCAGA------------ATTGCCACT--TCATGTTCACTGTAGCAGTGGCAGTTGAATAGT--ATTTTATATTTTTTCTTGATTTTGCAAATGTTATCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24780111 1062 - 73212453 ACAATCTTATGTTTTTATTAGAATTAAAAATGCTTAGATGACATAAATGAAAGA------TTACACAAGTGTGTGCATATGTTAGTATGATTATAGCTGTGTGGAAAAATCTATCATAagaaagaaaactggaagaaagtaccccaaaatattgactatggctgtttggaagatgaaatcataagtgacctttTCCCTTTCAATGAGCC-AA-ATTTAAAAAAAGA--GAATCTAGTACttttataat--aaa----aaaatacattttatcatattttattCCAAATTTTTTTTCTCAGAAAGATATACACAACTATTTTCTAAGATATGTGACATTTTGCATGGGTTCATTAATTTATTTGTATTCGAGGAGTTAAAAAATATTTTCAGCCTTGGTTTATGTACATTGAAACTATGGCTATGGGTTTAGATGATTCCCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGCCATAGAGCTATATTTACCATGCTAAAGGAATAAAACAC---GTTTTATTTGGAGATGAGCACAAATGCTTTATGGGCTCCCAGTATACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATGCCTGGAGGGCAATTCTAGGATATGAGAGCCC----------------------------------------CGCTG-----------GATTTGTGCTTCCGGTTTGGATGTC-CCTGGTTGAAGCCCCATCTCCTTTCTAGGACGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAACAGCAGTTTTCAACCGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGTTACAGGAAAGCCTGGGGAAAAATTGATTTTAAACCAAGCTTAACAAGGG-AATCTTGATAAAATGGCAACTCAGAAAA-ACCATGTCAAAATTTGCCCTGCAAATTATGTTCTGAAAAAAATTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCCACACCCAGA------------ATTGCCACT--TCATGTTCACTGTAGCAGTGGCAGTTGAATCGT--ATTTTATATTTTTTCTTGATTTTGCACATGTTATCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48002610 1069 - 81552678 acaatcttatgtttttattagaattaaaaatgcttagatgacataaatgaaagaa--agattacacaagtgtgtgcatatgttagtatgattatagctgtgtggaaaaatctatcataagaaagaaaactggaagaaagaaccccagaatattgactatggctgtttggaagataaaatcataagtgaccttttcccttttaatgagcc-aa-atttaaaaaaaga--gaatctagtgcttttataat--aaa----aaaaTACATTTTATCATATTTTATTCCTAATTTTTTTTCTCAGAAAGATACACACAACTATTTTCTAAGATACATGACATTTTGCATGGGTTTATTAATTTATTTGTATTTGAGGAGTTAAAAAATATTTTCAGCCTGGGTTTATGTACATTGAAAGTATGGTTATGGGTTTAGATGATTCCCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGCCATAGAGCTATATTTACCATGCTAAAGGAATAAAACACGTTGTTTTATTTGAAGATGAGCAAGAATGCTTTATGGGCTCCCAGCATACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAATAGAAAGAC--TGAGGATGCCTGGAGGGCAATTGCAGGATATGAGAGCCC----------------------------------------C-CTG-----------GATTTGTGCTTCCGGTTTGGATGTC-CCTGGTTGAAGCCCCATCTCCTTTCTATGACGCTGCTGGCTTTGATTCCTCTACCCTGCTG--TCC-------TTAACATTCACGAACAGCAGTTTTCAACTGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGAGTTACAGGAAAGCCTGGGGAAAAATCGATTTTAAACCAAGCTTAACAAGGG-AATCTTGATAAAATGGCAACTCAGAAAA-ACCATGTCAAAATTTGCCCTACAAATTATGTTCTGAAGAAAACTCTGCACAATAGTA-TTGATCGAAGCCTGTTTCTTCTCTGCACCCAGA------------GTTGCCACT--TCATGTTCACTGTAGCAGTGGCAGTTGAATAGT--ATTTTATATTTTTTCTTGATTTTGCAAGTGTTATCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53107979 1060 + 80904711 acaatcttatgttttgattagaattaaaaatgcttagatgacataaatgaaagaa--agattacacaagtgtgtgcatatgttagtatgattatagctgtgtggaaaaatctatcataagaaagaaaaccagaagaaagtaccccaaaatattgactatggctgtttgcaagatgaaatcataagtgaccttttcccttttaatcagcc-aa-attacagaaaaga--gaatctagtacttttataat--aaa----aaaaTACAATTTAT--TATTCTATTCCTAAT-TTTTTTCTCAGAAAGATACACACAACTGTTTTCTAAGATATATGACATTTTGCATGGGTTCATTAATGTGTTTGTATTTGAGGAGTTAAAAAATATTTTCAACCTGGGTTTTTGTATGTTGAAACTATGGTTATGGGTTTAGATGATTCTCTTGCCATAAAATGAATATTCTATCAACACTAATCAGCCATAGAGCTATATTTACCATGTGAAAGGAGTAAAACAT---GTTTTATTTGGAGATGAGCAAGAACACTTTATGGGCTCCCAGCATACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATACCTGGAGGGCAATTCCAGGATATGAGCGTCC----------------------------------------C-CTG-----------GATTTGTGATTCCTGTTTGGATGCC-CCT-GTTGAAGCCCCATCTCCTTTCTAGGATGCTGCCGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAACAGCAGTTTTCAACCGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGTTACAGGAAAGCCTGGGGAAAAATTGATGTTAAACCAAGCTTAGCAAGGG-AATCTTGATAAAATGGAAACTCAGACAA-ACCATGTCAAAGTTTGTCC-ACAAATTATGTTCTGAAAAAAACTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCCGCACCCAGA------------ATTGCCACT--TCATGTTCACTGTAGCAGTGGCAGTTGAATAGA--ATTTTATATTTTTTCTTGATTTTGCAAATGTTATCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52632225 1060 + 80997621 acaatcttatgttttgattagaattaaaaatgcttagatgacataaatgaaagaa--agattacacaagtgtgtgcatatgttagtatgattatagctgtgtggaaaaatctatcataagaaagaaaaccagaagaaagtaccccaaaatattgactatggctgtttgcaagatgaaatcataagtgaccttttcccttttaatgagcc-aa-attacagaaaaga--gaatctagtacttttataat--caa----aaaaTACATTTTAT--TATTCTATTCCTAAT-TTTTTTCTCAGAAAGATACACACAACTGTTTTCTAAGATATATGACATTTTGCATGGGTTCATTAATGTGTTTGTATTTGAGGAGTTAAAAAATATTTTCAACCTGGGTTTTTGTATGTTGAAACTATGGTTATGGGTTTAGATGATTCTCTTGCCATAAAATGAATATTCTATCAACACTAATCAGCCATAGAGCTATATTTACCATGTGAAAGGAGTAAAACAT---GTTTTATTTGGAGATGAGCAAGAACGCTTTATGGGCTCCCAGCATACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATACCTGGAGGGCAATTCCAGGATATGAGCGTCC----------------------------------------C-CTG-----------GATTTGTGATTCCTGTTTGGATGCC-CCT-GTTGAAGCCCCATCTCCTTTCTAGGATGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAACAGCAGTTTTCAACCGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGTTACAGGAAAGCCTGGGGAAAAATTGATGTTAAACCAAGCTTAGCAAGGG-AATCTTGATAAAATGGAAACTCAGACAA-ACCATGTCAAAGTTTGTCC-ACAAATTATGTTCTGAAAAAAACTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCCGCACCCAGA------------ATTGCCACT--CCATGTTCACTGTAGCAGTGGCAGTTGAATAGA--ATTTTATATTTTTTCTTGATTTTGCAAATGTTATCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47675613 1061 + 74645514 AcaatcttatatttttattagaattaaaaATGCTTAGAtgacataaatgaaagaa--agattaCACAAGTGTGTGCATATGTTAGTATGATTATAGCTGTGTGGAAAAATCTAtcataagaaagaaaaccagaagaaagtACCCCAAAATATTGACTATGGCTGTTTGCAAGATGAAATCCTAAGTGACCTTTTCCCTTTTAATGAGCC-AA-ATTACAGAAAAGA--GAATCTAGTACTTTTATaat--caa----aaaatacattttat--tattctattcctaat-ttttttctcagaaagatacACACAACTGTTTTCTAAGATATATGCCATTTTGCACGGGTTCattaatgtatttgtatttgaggagttaaaaaatattttcaacctgGGTTCATGTACATTGAAACTATGGTTATGGGTTTAGATGATTCCCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGCCATAGAGCTATATTTACCATGCGAAAGGagtaaaacat---gttttatttggaGATGAGCAAGAACGCTTTATGGGCTCCCAGCGTACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATGCCTGGAGGGCAATTCCAGGATATGAGCGCCC----------------------------------------C-CTG-----------GATTTGTGATTCCTCTTTGGACGTC-CCTGGTTGACGCCCCATCTCCTTTCTAGGATGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACTTTCACAAACAGCAGTTTTCAACTGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTT--GAACATGGGTTACAGGAAAGCCTggggaaaaatttattttaaaccaaGCTTAGTAAGGG-AATCTTgataaaatggaaactcagaCAA-ACCATGTCAAAGTTTGCCC-ACAAATTATGTTCTGaaaaaaaCTCTGCACAATATCA-TTGACTGAAGCCTGTTTCTTCTCCGCACCCAGA------------ATTGCCACT--TCATGTTCACTGTAGCAGTGGCAGCTGaatagt--attttgtattttttcttgattttgcaAATGTTATCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9942938 1025 - 75148670 acaatcttatgtttttattagaattaaaaatgcttagatgaaataaatgaaagaa--agattacacaagtgtgtgcatatgttagtatgattatagctgtgtggaaaaatctatcataagaaagaaaaccagaagaaagtaccccaaaatattgactatggctgtttgcaagatgaaatcataagtgaccttttcccttttaatgagcc-aa-attacagaaaaga--gaatctagtacttttataat--caa----aaaaTACATTTTAT--TATTCTATTCCTAAT-TTTTTTCTCAGAAAGATACACACAACTGTTTTCTAAGATATATGACATTTTGCATGGGTTCATTAATGTGTTTGTATTTGAGGAGTTAAAAAATATTTTCAACCTGGGTTTATGTATGTTGAAACTGTGGTTATGGGTTTAGATGATTCTCTTGCCATAAAATGAATATTCTATCAACAGTAATCAGTCATAGAGCTATATTTACCATGCGAAAGGAGTAAAACCT---GTTTTATTTGGAGATGAGCAAGAACGCTTTATGGGCTCCCAGCGTACCACAAATAAGCCGGAAGGAGAGGAAATAGTAAAGCAGAAAGAC--TGAGGATGCCTGGAGGGCAATTCCAGGATATGAGCGCCC----------------------------------------C-CTG-----------GATTTGTGATTCCTGTTTGGACGTC-CCTGGTTGAAGCCCCATCTCCTTTCTAGGATGCTGCTGGCTTTGATTCCTCTA-CCTGCTG--TCC-------TTAACATTCACAAACAGCAGTTTTCAACCGTGCAGATGACATAGGCTGAGCATGGCTCACAAGTGTTGCTCGA----------------------GGTGCATGTGGTC--GAACATGGGTTACAGGAAAGCCTGGGGAAAAATTGATTTTAAACCAAGCTTAGTAAGGG-AATCTTGATAAAATGGAAACTCAGAC--------------------------------------AAAAAAACTCTGCACAATAGCA-TTGACTGAAGCCTGTTTCTTCTCCGCACCCAGA------------ATTGCCACT--TCATGCTCACTGTAGCAGTGGCAGTTGAATAGT--ATTTTTTATTTTTTCTTGATTTTGCAAATGTTATCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112815462 1025 + 159171411 ACAACATTACATTTTTATGAAAATTAAAAATGCTCAGATGACATTAATGAAAGAA--AGATTACACAACTGTGTGCATATGTAAGTATGATTATAGCTATGTGGAAAA----------------------------------CCCAAACTATGGACAATGGCTGTTTGGAAGATGAAATTGTAAGTAACCCCTTCCCTTTCAATGAGCCAAA-ATTTTAAAAAAGA--GAATCTAGTACTTTCATAAT--CAA----AAAATAAATTTTATCATATTTTGTTCCTAAA-TTTTCTCTCAGAAAGATACATACAACTATCTTCTAAGATATATGACATTTTGCATGGGTTCATTAATTTATTTGTATTTCAGGAGTTAAAAAATATTTTCAATCTGGGTTTATATACATTGAAACTATGGTTATGGGTTTAGATGATTCCCTTGTCATAAGATAAATATTCCACGAACAGCAATCAGCCACAGAGCTATACTTACCATGCTAAAGGAAGAAAACAT---ATTTTATTTGGAGATTAGCAAGAATGCTTTATGGGCTCCCAGCATACCACAAATAAGCCAGAAGGAGAGGAAATAGTGAAGCAGAAAGAC--TGAGGATGCCTGGAGGGCAATTCCGGGATACGAAAGCCC----------------------------------------C-CTG-----------GACTTGTGCTTCCGGTTTGGGTGTC-CCTGGTTGAAGCCTCGTCTCCTTTCTAGGACGCTGCTGGCTTTGATTCCTCCA-CCTGCTG--TCC-------TTCACATTCACAAACAGCAGTTTTCAACTGTGCAGATTACATAGGCTGAGCATGGCTCACAAGTGTTGCTCAG----------------------CGTGCATGTGGTC--GAACATGTGTTACAGGAAAGCCTGGGGGAAAATCGATTTTAAACTAAGCTTAACAAGGG-AATCTTGATAAAATGGCAATTCAGAAAA-ACCATGTCAAAACTTGCCCTATAATTTACGTTCTGAAAAAAACTCTGCACAATAGCA-TTGACCAAAGGCTATTTCTTCTTTGTGCCCAGA------------ATTGCCACT--TCATGTTCA------CAGTGGCAGTTGAATAGT--CTTTTATCTTTTTTCTTGAATTTGCAAATGTTATCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99536747 1085 + 122082543 AAAATGTTTTCTTTTAAGTTGGGATTAAAGTGCTTTGGTAACATAAGTGAAAAGA--ATATGA---AACTGTATAAATTGTTAAGTATAATTATCCCTATGTAGAAAA-CCAATTATAAGAATGAAAATTAGAAG---TCCCTTCTAAATAT------TGGCCATTTGTGGGCCGGAACTGTA-------TATTTCCCCTTAATATGCA-AATGTTAAAAATAGGA--GAACCTTATTCATCGAGAAT--TAAACATAAAATACATGTT----------------AAT-TTATTTCTGAGAAAGATGCAGTCATCCATCATTTTATATATGCAACATTTCTCATGGATTATTTAATCTGTTTG------AGGAGT--AAAGATATTTTCAGACTGGTGTTAGGCAAATTGAAACTACAGTCCTGGGTTTAGACAACTTCTCTTCTGTTAAATGCCTATTATAGCCAAGGCCATTGACCACTAAACTGTATTTACCACCCTAAAGAAGTGAAACAA---GTTTTATTTGGAGATTAGCAAGAAGGCTTCATGGGCTTCTAGAATACCAAAAGCAAGCTTAAGGCAGAAGCTATGATCA-----ACAGAC--CCGGGATGCTTAGTGCAGATTTTCAGGATCTGAAATCCCAGTAGATCTGTTTCTGCACTGGGTGGAGCATGTTTGAGGTC-CTGACTCCGGGACAGATCTGTGTCTCAAGGTTGGGTGTAGCCAGGATCAGGTCTGGACTTCTTTCTTGAGCAGTTTTGATTTTCATCCA---G-CGTGCTGGAGAT-------TTAATTGTCATGCACAGCAGTTTTCAACTGTGCAAATCACATAGGCTGAACACGGCTCACACATGCTGTTTGAACACGGCTCACATGTGCTGTTCGGCATGGGTGCTCCGGAGCCTGGATTGCAGGGGAGTCTGGGGGAAA--CCAATTCAAACTAAGTTTAGTAAGAG-AATGCTGGTAGCAAGTCATCTCAGAAAC-A-----TTAGAGACTGCCTTCCCAATTGTCCTCAG-CGGAGGCTTTGCAT--------TTGACTCTAGCCCGTTCCATCTTTGGCCCCAGAACAGCCCCGCCCATGGCTGCT--TCA-GTTCACTGCAGCAGACATTGCTGCACAAC--------TCTTTCTTTTTAGCTTGTGAAATGTTATCT i mm10.chr11 C 0 I 608 s canFam3.chr9 39358056 1043 - 61074082 acaatcttataggtttatttggattgaaaatgcttacatgacat-agtgaaaaaagtagtttactcaactatgtgcatatgtaaatatgatttccattatgtggaaaaacctattatatgaaagaaagctggaag-----ctcccaaaatactgataacgggtgtttggggg-tggaattgtaactaatttttTCCCCTTTCATGTGCC-AA-ATTGAGAAAAAAATGGAATCCTGTACTTTTATAATTACAA----ATAAGACATTT-----------ATTCTTAAA-TTTCCTCTTAGAAAGATACATACAACTGTCTTCCAAGATGTATGACATTTTGCATGGATTAGTTAAACT-TTTGTATTTGAGGAGTTAAAAACTATTTTCAGCCTCGGTTTGTGCAAAATCAAACTATCGACATGGGTTTAGG------------CATCACATGGTTCTTATATCCACAGTTATAAGCCACAAAGCTATATTTACCATGCTAAAGGAATGAAACAT---ATTTTATTTGGAGATTAGCAAGAAAGCTTTATAGACTCCTAGAATATCACTAATAAGCAGGCAGGAGAGGAAATGACAAAGCAGAAATATAATGGGGATGTTTAGAGGACAAATTTAGGGTAGAAACCCCT----------------------------------------T-CTT-----------GACTT-----TTAGATTTGGATGCA-TCTGATTGAAGTCCCATCTCCTTTCCAGGACACTGCTGGCTTTGACTCCTCTA-TCCACTG--CGCCGAGGGTTGAACATTCATGCACAGTAGTTTTCGACCGTGCAAATCAGATACGCTGAGCATGCCTCACAAGTGTTGCTTGA----------------------TGTGCTTATTGTA--GAACACGGGTTACAAGGAAGCCTGTGGAA------ATTTTGAAGTAAGCTTAACAAGGGAAATCCAGGTAAAATTTCAACTCAGAAAAGATCGTGCCAAAATTTGCCCTGCAAATGATGTTCTG-AACACTCTTTGCAGAGTAGCATTTGACCTAAGCCTATTTCAGGCCTAGATTCAGC------------ATTGCCACTAGGAATGCTCACTGCCCCTGTGCCAGTTGAATACACAGTTTTGTGTATTTATTTCACTTTGCAAATGTCATCT i canFam3.chr9 C 0 C 0 a score=473494.000000 s hg38.chr17_JH159146v1_alt 127925 136 + 278131 TAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGCATGAAATGTTACAC-TAATAATTAATCTGC-------CTTTAGAATATTTTAAAAATATCTCTAGTGTCATGTTCTTAACCTCAGCCA s panTro4.chr17 66248448 136 - 82630442 TAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGCATGAGATGTTACAC-TAATAATTAATCTGC-------CTTTAGAATATTTTTAAAATATCTCTAGTGTCATGTTCTTAACCTCAGCCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24781173 136 - 73212453 TAGGCCTCTTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGCATAAAATGTTACAC-TAATAATTAATCTGC-------CTTTAGAATATTTTTAAAATATCTCTAGTGTCATGTTCTTAACCTCAGCCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48003679 136 - 81552678 TAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGCATGAAATGTTACAC-TAATAATTAATCTGC-------CTTTAGAATATTTTTAAAATATCTCTAGTGTCATGTTCTTAACCTCAGCCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53109039 136 + 80904711 CAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGTATGAAATGTTACAC-TAATAATTAATCTGC-------CtttataatattttaaaaatatCTCTAGTGTCATGTGCTTAACCTCAGCCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52633285 136 + 80997621 CAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGTATGAAATGTTACAC-TAATAATTAATCTGC-------CTTTATAATATTTTAAAAATATCTCTAGTGTCATGTGCTTAACCTCAGCCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47676674 136 + 74645514 CAGGCCTATTCCTGATTTTCCTTTAGTGGAAAACAGGAACAAAGGGAGATG-CCAGTAGGAAATGTTACAC-TAATAATTAATCTgc-------ctttataatattttaaaaatatctctagtGTCATGTGCTTAACCTCAGCCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9943963 136 - 75148670 CAGGCCTATTCCTGATTTTCCTTTAGTGGAAAAGAGGAACAAAGGGAGATG-CCAATATGAAATGTTACAC-TAATAATTAATCTGC-------CTTTATAATATTTTAAAAATATCTCTAGTGTCATGTGCTTAACCTCAGCCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112816487 136 + 159171411 TAGGCCTATTCCTGATTTTCCGTGAGTGGAAAACAGGAACAAAGGGAGGTG-CCAGCATGACATGTGACAC-TAATAATTAATCTGC-------CTTTAGAATATTTAAAAAATAGTTCTCATGTCATGTGCTTAGCCTCAGCTA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39359099 144 - 61074082 TATGCATGTTCCTGATTTCTCTTTGGTGGAAGTCAGGAACAAAGGGGGACGCCCAGCATGAAATTTTGTATGTGATACTTATTCTGCTTTAGAACTTTGGAATACTTTT-GAATACTTCTACTGTCATGTGATTAGCCTCAGCtg i canFam3.chr9 C 0 C 0 e mm10.chr11 99537832 608 + 122082543 I a score=1746050.000000 s hg38.chr17_JH159146v1_alt 128061 413 + 278131 ---------------------------------CTTTTCAGCACTTTTTTAA---GAAGATCCCTAAACACACTGGGGAGGTCTGAACTTGTCCAGACTTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATTTCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCGCTGTCCAGCAGGCCCCAGTACGTGTTGATCTCACCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCAGGTTATCGATCAGACACTGAATTTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGCgggagga-aa----cattgtccaaaggacc--atgaagtgcagtctctcgggccagag s panTro4.chr17 66248584 413 - 82630442 ---------------------------------CTTTTCAGCACTCTTTTAA---GAAGATCCCTAAACACACTGGGGAGGTCTGAACTTGTCCAGACTTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATTTCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCGCTGTCCAGCAGGCCCCGGTACGTGTTGATCTCACCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCAGGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGCgggagga-aa----cattgtccaaaggacc--atgaagtgcattctctcgggccagag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24781309 413 - 73212453 ---------------------------------CTTTTCAGCACTCTTTTAA---GAAGATCCCTGAACACACTGGGGAGGTTTGAACTTGTCCAGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATTTCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCGCTGTCCAGCAGGCCCCAGTACGTGTTGATCTCACCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGCAGCTGTACTGGGCCTCAGTTTCTGCTACAGTGCATTCCAGAGATTCTGTCTGCAGGATGA-AA----CATTGTCCAAAGGACC--ATGAagtgcagtctctcgggccagag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48003815 413 - 81552678 ---------------------------------CTTTTCAGCACTCTTTTAA---GAAGATCCCTGAACACACTGGGGAGGTTTGAACTTGTCCTGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATTTCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCGCTGTCCAGCAGGCCCCGGTATGTGTTGATCTCACCCTCCAGCCGGGCCTTCACATCCAGGAGTACCTGGTACTTCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCAATCAGACACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGcaggagga-aa----cattgtccaaaggact--atgaagtgcagtctcttgggccagag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53109175 413 + 80904711 ---------------------------------CTGTTCAGCCCTCTTTTAA---GAAGATCCCTGAGCACATTGGGGAGGTTTGAACTTGTCCAGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATATCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCACTGTCCAGCAGGCCCCGATACGTGTTGATCTCGCCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGcaggagga-aa----cattgtccaaaggacc--atgaagtgcagtctctcgggccagag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52633421 413 + 80997621 ---------------------------------CTGTTCAGCCCTCTTTTAA---GAAGATCCCTGAGCACATTGGGGAGGTTTGAACTTGTCCAGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATATCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCACTGTCCAGCAGGCCCCGATACGTGTTGATCTCGCCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGcaggagga-aa----cattgtccaaaggacc--atgaagtgcagtctcttgggccagag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47676810 413 + 74645514 ---------------------------------CTGTTCAGCCCTCTTTTAA---GAAGATCCCTGAACACACTGGGGAGGTTTGAACTTGTCCAGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATATCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCACTGTCCAGCAGGCCCCGATACGTGTTGATCTCGCCCTCCAGCTGGGCCTTCATGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGCAGGAGGA-AA----CATTGTCCAAAGGACC--ATGAAGTGCAGTCTCGTGGGCCAGAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9944099 413 - 75148670 ---------------------------------CTGTTCAGCCCTCTTTTAA---GAAGATCCCTGAACACATTGGGGAGGTTTGAACTTGTCCAGACCTTGGGGAAACAGGATTCTTTTACATCAGCCTCTTTGTGACTCTGGGGGATATCATGAGTAAC--TGTGGAGCTTGCCTGCTGTCCTCACTGTCCAGCAGGCCCCGATACGTGTTGATCTCACCCTCCAGCCGGGCCTTCACGTCCAGGAGCACCTGGTACTCCTGGTTCTGTCGCTCCAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGATTCTGTCTGcaggagga-aa----cattgtccaaaggacc--atgaagtgcagtctctcgggccagag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112816623 413 + 159171411 ---------------------------------CTTTTGAGCACTCTTTTAA---GAAGATCCCTGAACACATTAGGGAGGTTTGAACTGGGCCAGATGTTGGGGAAACAGGATTCTCTCACATCAGCGTCTTTGAGACTCTGAGGGGTTTCATGAGTAAC--TGTGGAACTTGCCTGCTGTCCTCGCTCTCCAGCAGGCCCTGGTACGTGTTGATTTCGCCCTCCAGCCGGGCCTTCACATCCAACAGCACTTGGTACTCCTGGTTCTGTCGCTCTAGGTCGCAGCGGATCTCGGCCAGCTGGTTCTCCACGTTATCGATCAGGCACTGAATCTGGGCCAGCTGGGAGCTGTACTGGGCCTCGGTTTCTGCCACGGTGCATTCCAGAGAGTCTGTCTGCAGGAGGA-AA----CATTGTCCAAAGGACC--ATGAAGTGCAGTCTCTGGGGCCAGAG i calJac3.chr5 C 0 I 341 s mm10.chr11 99538440 377 + 122082543 ---------------------------------CTTTCTTTCACTGTTTGAAAAGGAAGACCCCGAAACAT-------GGAATTGGCCTTAGTCAGGCCTTGAGGAAACAGGGTTCTCCTGGG-----------GGGACTCTGGGGGT------------C--TGTGTAACTTGCCTGCTGTCCTCCTTCTCCAGCAGGCCCCTGTACGTGTTGATCTCACACTCCAGCCGGGCCTTGGTGTCCAGCAGCACCTGGTACTCCTGGTTCTGACGCTCCAGGTCACAGCGGATCTCAGCCAGCTGGTGCTCCACACTGTCAATTAGGCACTGCATTTGGGCCAGTTGTGTGCTGTACTGGGCCTCGGTTTCTGCCACAGTACACTCCAGAGACTCCGTCTGCAAGAGTAGAA----CCTTCtcagaaggaccctatga----cagaccctcg-------- i mm10.chr11 I 608 C 0 s canFam3.chr9 39359243 448 - 61074082 ttttttttgttgttgttgttttgttttgtttgtcttttta---ctcttgtAA---GGAGATCATTTAACACATGAGGGAGGTTTCACCTTGGGCAGACCTTGAGGAGGCAAGATTCTCTTGCATGAGCTTCTTTGTGACT-TGGGGGATTTTGAGAATAATCGTGTGGAACTTGCCTGCTGTCTTCACTCTCAAGGAGACCTCGGTATGTGTTGATCTCACCCTCCAGCAGAGCCTTTGTGTCCAGCAGCACCTCATACTCCTGGTTCTGCCGCTCCAGGTCACAGCGGATCTCAGCCAGCTGGTTCTCCACGTTATCAATCAGGCACTGCATCTGGGCCAGCTGGGTGCTATACTGGGCCTCCGTCTCTGCCACAGTGCATTCCAGAGACTCTGTCTGCAGAAGAA-AAAGAGTATATTCAGAAGGGCT--GTGTagcatagtccttggggccagag i canFam3.chr9 C 0 C 0 a score=413281.000000 s hg38.chr17_JH159146v1_alt 128474 150 + 278131 tgcctactttcaaattcctgct-tacccttttctagctatgtgaccac-tggcaaattatttagcttctgtgagtctcagttttattctctgtatagtggagaatacaaagtatctgtttcattagac-ggttgtgaagattaa--gagttaata s panTro4.chr17 66248997 150 - 82630442 tgcctactttcaaattcctgct-tacccttttctagctatgtgaccac-tcgcaaattatttagcttctgtgagtctcagttttattctctgtatagtggagaatacaaagtatctatttcattagac-ggttgtgaagattaa--gagttaata i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24781722 150 - 73212453 tgcctactttcaaattcctgct-tacccttttctagctatgtgaccac-tggcaaattatttcgcttttgtgaatctcagttttattctctgtatagtggggaatacaaagtatttgtctcattagag-ggttgtgaagattaa--gagttaata i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48004228 150 - 81552678 tgcctactttcaaattcctgct-tacccttttctagctatgtgaccac-tggcaaattatttagcttctgtgagtctcagttttattctctgtatagtggggaatacaaaatatttgtctcattagac-ggttgtgaagattaa--gagttaata i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53109588 140 + 80904711 tgcctactttcaaatccttgct-tacccttttctagctatgtgaccac-tggcaaattatttagcttctgtgagtctcagttttattctctat----------atgcaaagtatttgtctcattagag-ggttgtgaagattaa--gagttaata i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52633834 140 + 80997621 tgcctactttcaaatccttgct-tacccttttctagctatgtgaccac-tggcaaattatttagcttctgtgagtctcagttttattctctat----------atgcaaagtatttgtctcattagag-ggttgtgaagattaa--gagttaata i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47677223 150 + 74645514 TGCCTACTTTCAAATCCTTGCT-TACCCTTTTCTAGCTATGTGACCAC-TGGCAAATTATTTAGCTTCTGTGAGTCTCAGTTTTATTCTCTATATAGTGGGGAATGCAAAGTATTTGTCTCATTAGAG-GGTTGTGAAGCTTAA--GAGTTAATa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9944512 140 - 75148670 tgcctatgttcaaatccttgct-tacccttctctagttatgtgaccac-tggcaaattatttagcttttgtgagtctcagttttattctctat----------atgcaaagtatttgtctcattagag-ggttgtgatgattaa--gagttaata i chlSab2.chr16 C 0 C 0 s mm10.chr11 99538817 133 + 122082543 -------------------atg-tacccctttctagctcagagacctcagggccagttacttagcttctctgagcct--gttttattctagagtcaatggagaatgcaaagtacctatgtcatgggggaggctggggaggtgagatgagctgata i mm10.chr11 C 0 C 0 s canFam3.chr9 39359691 151 - 61074082 tgctggttttcaaatccttgatctaccctagtgcatctatgtgacttt-gggaaaattacttagcttctctgaggct--gttttattttataaaaaatgaccaatgcaaagtacttatttcataggat-ggttgtgcggattgaatgaattaata i canFam3.chr9 C 0 C 0 e calJac3.chr5 112817036 341 + 159171411 I a score=4403.000000 s hg38.chr17_JH159146v1_alt 128624 6 + 278131 tgcggg s panTro4.chr17 66249147 6 - 82630442 tgcggg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24781872 6 - 73212453 tgcggg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48004378 6 - 81552678 tgcggg i nomLeu3.chr19 C 0 C 0 s mm10.chr11 99538950 6 + 122082543 cttggg i mm10.chr11 C 0 I 201 s canFam3.chr9 39359842 6 - 61074082 tgtgta i canFam3.chr9 C 0 C 0 e calJac3.chr5 112817036 341 + 159171411 I e chlSab2.chr16 9944652 0 - 75148670 C e papAnu2.chr16 47677373 0 + 74645514 C e macFas5.chr16 52633974 0 + 80997621 C e rheMac3.chr16 53109728 0 + 80904711 C a score=30151.000000 s hg38.chr17_JH159146v1_alt 128630 53 + 278131 ctgggcgcggtggctcaggcctgt----aatcccagcactttgggaggccgaggcgg s panTro4.chr17 66249153 53 - 82630442 ctgggcgcggtggctcacgcctgt----aatcccagcactttgggaggccgaggcgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24781878 53 - 73212453 ccaggcgcggtggctcatgcctgt----aatcccagcactttgggaggccgaggcgg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48004384 53 - 81552678 ctgggcacggtggctcacgcctgt----aatcccagcactttgggaggctgaggcag i nomLeu3.chr19 C 0 C 0 s canFam3.chr9 39359848 55 - 61074082 --aaacactgtgaacagtgcctggAAAAAATTTCAAAACTGTGCAAGGACTATGCTG i canFam3.chr9 C 0 I 158 e mm10.chr11 99538956 201 + 122082543 I e calJac3.chr5 112817036 341 + 159171411 I e chlSab2.chr16 9944652 0 - 75148670 C e papAnu2.chr16 47677373 0 + 74645514 C e macFas5.chr16 52633974 0 + 80997621 C e rheMac3.chr16 53109728 0 + 80904711 C a score=113575.000000 s hg38.chr17_JH159146v1_alt 128683 218 + 278131 gcggatcacaaggtcagaagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatataaaaaattagctgggtacggtggtggacgcctgtagtcccagctactcaggagaatggtgtgaacccgggaggcaaagcttgcagtaagtcaagatcatgccattgcactccagcctgggcgacagagggagactccgtccaaaaaa s panTro4.chr17 66249206 218 - 82630442 gcggatcacaaggtcagaagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatataaaaaattagctgggtatggtggtgggcgcctatagtcccagctactcaggagaatggtgtgaacccgggaggcaaagcttgcagtgagtcaagatcatgccattgcactccagcctgggcgacagagcgagactccgtccaaaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24781931 218 - 73212453 gcggatcacaaggtcaggagatcaagaccatcctggctaacacggtgaaaccacatctctactaaaaatacaaaaaattagctgggcgcggtggtgggcgcctgtagtcccagctactcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcgtgccactgcactccagcctgggtgacagagcgagactccatccaaaaaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48004437 218 - 81552678 gcggatcacaaggtcaggagattgagaccatcctggctaacatggtgaaaccccgcctctgctaaaaatacaaaaaattagctgggcatggtggtgggcgcctgtagtcccagctactcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagcgagactccctccaaaaaa i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 39359903 158 - 61074082 I e mm10.chr11 99538956 201 + 122082543 I e calJac3.chr5 112817036 341 + 159171411 I e chlSab2.chr16 9944652 0 - 75148670 C e papAnu2.chr16 47677373 0 + 74645514 C e macFas5.chr16 52633974 0 + 80997621 C e rheMac3.chr16 53109728 0 + 80904711 C a score=1112.000000 s hg38.chr17_JH159146v1_alt 128901 7 + 278131 -aaaaaaa s panTro4.chr17 66249424 7 - 82630442 -aaaaaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24782149 7 - 73212453 -aaaaaaa i ponAbe2.chr17 C 0 I 4 s nomLeu3.chr19 48004655 7 - 81552678 -aaaaaag i nomLeu3.chr19 C 0 C 0 s canFam3.chr9 39360061 7 - 61074082 ggattga- i canFam3.chr9 I 158 C 0 e mm10.chr11 99538956 201 + 122082543 I e calJac3.chr5 112817036 341 + 159171411 I e chlSab2.chr16 9944652 0 - 75148670 C e papAnu2.chr16 47677373 0 + 74645514 C e macFas5.chr16 52633974 0 + 80997621 C e rheMac3.chr16 53109728 0 + 80904711 C a score=9139.000000 s hg38.chr17_JH159146v1_alt 128908 11 + 278131 aagagttaatg s panTro4.chr17 66249431 9 - 82630442 --gagttaatg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24782160 11 - 73212453 aagagttaatg i ponAbe2.chr17 I 4 C 0 s nomLeu3.chr19 48004662 8 - 81552678 ---agttaata i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112817377 11 + 159171411 aagagttagta i calJac3.chr5 I 341 C 0 s canFam3.chr9 39360068 11 - 61074082 atgaattaata i canFam3.chr9 C 0 C 0 e mm10.chr11 99538956 201 + 122082543 I e chlSab2.chr16 9944652 0 - 75148670 C e papAnu2.chr16 47677373 0 + 74645514 C e macFas5.chr16 52633974 0 + 80997621 C e rheMac3.chr16 53109728 0 + 80904711 C a score=644468.000000 s hg38.chr17_JH159146v1_alt 128919 192 + 278131 tgcgtaaagcatttagaacagtgcc----agccatacTGCCACTGTTCTACGTGTCAACTATCA-------CTACCACCACTATGACTACAGCAATACATGACATATTTGTGAAGCTTAAGGACTATCCACAACATATGAGAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTATTAAGAGAAGAGG s panTro4.chr17 66249440 192 - 82630442 tgcgtaaagcatttagaacagtgcc----agccatactgtcactgttctacgtgtcaactatca-------ctACCACCACTATGACTATAGCAATACATGACATATTTGTGAAGCTTAAGGACTATCCACAACATATGAGAGGAAAGATTGAGTTTGGGCTCTTGGCGGGGGTGGGTAGTATAGTGCTGTTAAGAGAAGAGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24782171 199 - 73212453 tgcgtaaagcatttagaacagtgcc----agccataCTGCCACTGTTCTACGTGTCAACTATCACTACCACCTACCACCACTATGACTACAGCAATACATGACATATTTGTGAAGCTTAAGGACTATCCACAGCATATGAAAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTACTATAGTGCTGTTAAGAGAAGAGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48004670 192 - 81552678 tgcgtaaagcatttagaacagtgcc----agtcatacTGCCACTGTTCTACGTGTCAACTATCA-------CTACCACCACTATGACTACAGCAATACATGACATATTCGTGAAGCTTAAGGACTATCCACAGCATATGAGAGGGAAGATTGAGTGTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTGTTAAGAGAAGAGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53109728 192 + 80904711 tgtgtaaagcatttagaacagtgcc----agccgtactgccactgttctacatgtcagctatca-------ctACCACCACTATGACTACAGCAATACATGACTTATTTGTGAAGCTTAAGGACTATCAACAGCATATGAGAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTGTTAGGAGAAGAGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52633974 192 + 80997621 tgtgtaaagcatttagaacagtgcc----agccgtactgccactgttctacatgtcagctatca-------ctACCACCACTATGACTACAGCAATACATGACTTATTTGTGAAGCTTAAGGACTATCAACAGCATATGAGAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTGTTAGGAGAAGAGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47677373 192 + 74645514 tgtgtaaagcatttagaacagtgcc----agCCGTACTGCCACTGTTCTACATGTCAGCTATCA-------CTACCACCACTATGACTACAGCAATACATGACTTATTTGTGAAGCTTAAGGACTATCAACAGCATATGAGAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTGTTAGGAGAAGAGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9944652 192 - 75148670 tgtgtaaagcatttagaacagtgcc----agctgtactgccattgttctacatgtcagctATCA-------CTACTACCACTATGACTACAGCAATACATGACATATTTGTGAAGCTTAAGGACTATCAACAGCATATAAGAGGAAAGATTGAGTTTGGGCTCTTGGCAGGGAGGGGTAGTATAGTGCTGTTAGGAGAAGAGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112817388 192 + 159171411 tgtgtaaagcacttaggacagtgcc----agccatactaccactgttctacatgtcagctatta-------ctACCACCACTACGACTGCAGCAATCCACGCCGTATTTGTGAAGCTTAAGGACTATCAACAGCATTTGAGGGGAAACATTGAGTTTGGGCTCTTGGCAGGGAGGGATAGTATAGTGCTGTTAAGAGAAGAGG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39360079 186 - 61074082 tgtgtaaaacactgtgaacagtgcctggaaaaaatttcaaaactgtgc-aagggttagttatta-------ctATCACCACT-TGCCCATCACAACCTGTAATATAT--------ATTAAGGAAGATCAACAGCATTTGAGGGGAGAAGTTGAGTATGGACTTGGGGCAGGAAAGAGCCAtatagaatggttcagagaagagg i canFam3.chr9 C 0 C 0 e mm10.chr11 99538956 201 + 122082543 I a score=1026814.000000 s hg38.chr17_JH159146v1_alt 129111 354 + 278131 CTCTGgataccagaggctgggactggcatatgtgtggtaaggggatgaagagaggttggttaatgggtgcaaacatacagttagacagaaagaatatgttttcatgttggacagcagagaagtgtgactacagttaacaacaatacactgtgcatttcaaaatagctagatgggaggacttgaaatgctcccaacacatagaaatgataaatacttgaggtgatggatgctctaaatatcctgacttgatcattacacattctatgcatgtaacaaaatatcacatctacgtaaaaaaaatttacgcatattatatatcaat-aaaaataaaTTTAAAAAGAGAGagagaagaga s panTro4.chr17 66249632 354 - 82630442 CTCTGgataccagaggctgggatgggcatatgtgtggtaaggggatgaagagaggttggttaatgggtgcaaacatacagttagacagaaggaatacgttttcatgttggacagcagagaagggtgactacagttaacaacaatacactgtgcatttcaaaatagctagatgagaggacttgaaatgctcccaacacatagaaatgataaatacttgaggtgatgcatgctctaaatatcctgacttgatcattacacattctatgcatgtaacaaaatatcacatctacgtaaaaaaaatttacgcatattatatatcaat-aaaaataaaTTTAAAGAGAGAGagagaagaga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24782370 347 - 73212453 CTCTGgataccagaggctgggacgggcacatgtgtggtaaggggatgaagagaggttggctaatgggtgcaaacatacagttagacagaagggatacgttttcatgttagacagcagagaagggtgactacagttaacaacaatacactgtgcatttcaaaatagctagaagagaggacctgaagtgctcccaacacatagaaatgataaatacttgaggtgatggatgctctaaatatcctgacttgatcattacacattctatgcatgtaacaaaatatcacatctatgttaaaaaaatttacac-------atatcaat-aaaaataaaTTTAAAAAGAGAGagagaagaga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48004862 352 - 81552678 CTCTGgataccagaggctgggacaggcatatgtgtggtaaggggacgaagagaggttggttaacgggtgcaaacatacagttagacagaaggaatacgttttcatgttggacagcagagaagggtgactacagttaacaacaatacactgtgcacttcaaaatagctagaagagaggacttgaaatgctcccaacacgtagaaatgagaaatacttgaggtgatggatgctgtaaatatcctgacttgattattacatattctatgcatgtaacaaaatatcacatctatgt--aaaaaatttatgaatattatatatcaat-aaaaataaaTTTAAAAAGAGAGagagaagaga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53109920 354 + 80904711 CTCTGgataccagaggctgggaagggcatgtgtgtggtaaggggatgaagagaggttggttaatgggtgcaaacatacagctagacagaaggaatacgttttcatgttggacagcagagaagggtgactacagttaacaacaatacactgtgcatttcaaaatagctagaagagtgggcttgaaatgctcccaacacgtagaaatgataaatacttgaggtgatggatgctgtaaatatcctgacttgatcgttacacattctatgcatgttacaaaatagcacatctactccataaatatttacaaatattgtatatcaat-aaaaataaaTTTAAAAAGAGAGagagaagagg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52634166 354 + 80997621 CTCTGgataccagaggctgggaagggcatgtgtgtggtaaggggatgaagagaggttggttaatgggtgcaaacatacagctagacagaaggaatacgttttcatgttggacagcagagaagggtgactacagttaacaacaatacactgtgcatttcaaaatagctagaagagtgggcttgaaatgctcccaacacgtagaaatgataaatacttgaggtgatggatgctgtaaatatcttgacttgatcgttacacattctatgcatgttacaaaatagcacatctactccataaatatttacaaatattgtatatcaat-aaaaataaaTTTAAAAAGAGAGagagaagagg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47677565 354 + 74645514 CTCtggataccagaggctgggaagggcatgTGTGTGGTaaggggatgaagagaggttggttaatgggtgcaaacaTACAGCTAGACAGAAGGAATACGTTTTCATGTTGGACAGGAGAgaagggtgactatagttaacaacaatacACTGTGCatctcaaaatagctagaagagtggGCTTGAAATgctcccaacacatagaaatgataaatacttgaggtgatggatgctgtaaatatcctgacttgatcgttacacattctatgcatgttaCAAAATATCACAtctactccataaatatttacaaatattgtatatcaat-aaaaataaatttaaaaagagagagagaagagg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9944844 352 - 75148670 CTCTGgataccagaggctgggaagggca--tgtgtggtaaggggatgaagagaggttggttaatgggtgcaaacatacagctagacagaaggagtacgttttcatgttggacagcagagaagggtgactacagttaacaacagtacactatgcatttcaaaatagctagaagagagggcttgaaatgctcccaacacatagaaatgataaatacttgaggtgatggatgctgtaaatatcctgacttgatcgttacacattctatgcatgttacaaaagatcacatctactccataaatacttacaaatattatatatcaat-aaaaataaaTTTAAAAAGAGAGagagaagagg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112817580 348 + 159171411 CTCTGGGTACT-gaggctggaaagggtatatgtgtggtaaggggatgaagagaggttggttaatgggtacaaacatacagttacatagaaggaatatgtttgcatgttggacagtagagaagggtggctacagttaacaacaacacactgtgtatttcaaaatagctagaagagaagacttgaaatgttcccagcacacagaattaataaatactggaggttacggatgccctaaatatcttgccttgatcattacacattctatgcatctaacaaagtttctcatgtactccataaatatttacaa------tatatcaataaaaaataaaTTTAAACAGAGAGCgagaagaga i calJac3.chr5 C 0 C 0 e canFam3.chr9 39360265 0 - 61074082 C e mm10.chr11 99538956 201 + 122082543 I a score=136609.000000 s hg38.chr17_JH159146v1_alt 129465 36 + 278131 ctctgggattcaactggctgaactcagcttccaagt s panTro4.chr17 66249986 36 - 82630442 ctctgggattcaactggctgaactcagcttccaagt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24782717 36 - 73212453 ctctgggattcaactggctgaactcagcttccaagt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48005214 36 - 81552678 ctctgggattcaactggctgaactcagcttccaagt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53110274 36 + 80904711 ctctgggattcaactggctgaactcagcttccaagt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52634520 36 + 80997621 ctctgggattcaactggctgaactcagcttccaagt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47677919 36 + 74645514 ctcTGGGATTCAACTGGCTGAACTCAGCTTCCAAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9945196 36 - 75148670 ttctgggatttaactggctgaactcagcttccaagt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112817928 36 + 159171411 ctctgggatttgactggctgaattcagcttccatgt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39360265 36 - 61074082 ctctgggattgaaccagctggatccagcttccactt i canFam3.chr9 C 0 C 0 e mm10.chr11 99538956 201 + 122082543 I a score=4395976.000000 s hg38.chr17_JH159146v1_alt 129501 1173 + 278131 ttgcctcttag-----------------------------------aattgcat--c---ctttgcaagttacttaatctgagtctcagttttccttatctgtgt-catggg----ata---aaggtatctatccggtaaagttactgtgagcc--ttaaatcagCATAGTGCCTCTCACAGGATGAATGCTCAGCTATTGTTCTTCTAGGTGTTCTCCGCAGGGCCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGAACGCATGGTGTTCCTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGGGT--GGTGCAGTGAAGGATAAGGTTGAAGTGTAGATCCT-----------GGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCCAGAATGCTTAAGCGACCATGGCCCGGAGGTTTCTCTCCAGCTCTGCTTCT----CCCTCC----------CTGTCTCTGGAGGCTGCTGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGG------ACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATAGCTGGGTAAACGGCAGTACTCGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCTCGGA--T--ATGGAAGAGGGCTTAACATCTCAGGGCCTGACTTATCAGTGACACA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCACTGGCTGTGCGTTTCAGTTCCAAGATCTCCATCTGGCAGCCCTGCAGCTGCTCCGCGCTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGACACCATTAGAGAATTCAAAAAAGGCAGAAGTCTGTAAGCCTGACATTTTTTCA---------------------------------------------------------------------ATCTGGGTACTGACCTGAACAGCCAACCATTCTTCAGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCACACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTTCACGAAGCAAGTTGACTTCCTGAAAGTGG-GATGGTGTAAAGAATGTCACAGAATGGTGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTTTGG---AGCagtgggtaaaagt-------------------------------------------gtgagattttga----------ttcagattgcctg s panTro4.chr17 66250022 1173 - 82630442 ttgcctcttag-----------------------------------aattgcat--c---ctttgcaagttacttaatctgagtctcagttctccttatctgtgt-catggg----ata---aaggtatctatccggtaaagttactgtgagcc--ttaaatgagCATAGTGCCTCTCACAGGATGAATGCTCAGCTATCGTTCTTCTAGGTGTTCTCCGCAGGGCCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGAATGCATGGTGTTCCTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGGGT--GGTGCAGTGAAGGATAAGGTTGAAGTGTAGACCCT-----------GGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCCGGAATGCTTAAGCGACCATGGCCCAGAGGTTTCTCTCCAGCTCTGCTTCT----CCCTCC----------CTGTCTCTGAAGGCTGCCGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGG------ACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATAGCTGGGTAAACGGCAGTACTTGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCTCGGA--T--ATGGAAGAGGGCTTAACATCTCAGGGCCTGACTTATCAGTGACACA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCACTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCGCTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGACACCATTAGAGAATTCAAAAAAGGCAGAAGTCTGTAAGCCTGACATTTTTTCA---------------------------------------------------------------------ATCTGGGTACTGACCTGAACAGCCAACCATTCTTCAGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTTCATGAAGCAAGTTGACTTCCTGAAAGTGG-GATGGTGTAAAGAATGTCACAGAATGGTGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTTTGG---AGCagtgggtaaaagt-------------------------------------------gtgagattttga----------ttcagattgcctg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24782753 1178 - 73212453 ttgcctcttag-----------------------------------aattgcat--c---ctttgcgagttagttaatctgagtctcagttttccttatctgtgt-catggg----ata---aaggtatctatcccataaagttactgtgaggc--ttaaatgagCATAGTGCCTCTCACAGGTTGAATGCTCAGCTATCGTTCTTCTAGGTGTTCTCCGCAGGGCCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGAACGCATGGTGTTCCTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGGGGTGGGGTGGGGTGCAGTGAAGGATAAGGTTGAAGTGTAGATGCT-----------GGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCCGGAATGCTTAAGTGACCATGGCCCGGAGGTTTCTCTCTCGCTCTGCTTCT----CCCTCC----------CTGTCCCTGGAGGCTGCCGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCGTCTTAGAGG------ACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATAGCTGGGTAAACGGCAGTACTCGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCTTGGA--T--ATGGAAGAGGGCTTAACATCTCAGGGCCTGACTTATCAGTGACACA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCTGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCAAAAAAGGCAGAAGTCTGTAAGCCTGACATTTTTTCA---------------------------------------------------------------------ATCTGGGTACTGACCTGAACAGCGAACCATTCTTCAGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGTTGACTTCCTGAAAGTGG-GATGGTGTAAAGAATGTCACAGAATGGTGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTTTGG---AGCagtgggtaaaagt-------------------------------------------gtgagattttga----------ttcagattgcctg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48005250 1178 - 81552678 ttgtctcttag-----------------------------------aattgcat--c---ctttggaagttacctaatctgagtctcagttttccttatctgtgt-catggg----ata---aaggtatctatcccataaagttactgtgaagc--ttaaatgCGCATAGTGCCTCTCACAGGATGAATGCTCAGCTATCGTTCTTCTAGGTCTTCTCCGCAGGGCCCAATGACATGCA-----CACAGCGGTGCTTGACCAGAACTGGTTCATGTCATCTTGAACGCATGGCGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGTGG--GGTGCAGTGAAAGATAAGGTTGAAGGGCAGATCCT-----------GGGAAACTGTCGGATGAAATGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCTGGAATGCTTAAGTGACCATGGCCCGGAGGTGtctctctcgctctgcttct----ccctcc----------ctgtctctGGAGGCTGCCGCAGCAT-CAGACTCAAGCCCAAGAACGAAGGT-AAGGCATCTTAGAGGGACAATACAAGCTGTGGACCTGTCATTTCTGCTTCTATTAATAGCTGGGTAAACGGCAGTACTCGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCTTGGG--T--ATGGAAGAGGGCTTAACATCTCAGGA-CTGACTTATCAGTGACACA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCAAAAAAGGCAGAAGTCTGTAAGCCTGACATTTTTTCA---------------------------------------------------------------------ATCTGGGTGCTGACCTGAACAGCGAACCATTCTTCAGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGCGTCCAACTCCACACTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGCTGACTTCCTGAAAGTGG-GATGGTGTAAAGAATGTCACAGAATGATGGGGAAAAA----TCCATTTGACATC----------CAACGGCATTCTACTTCTGTTTTTTGG---AGCagtgggtaaaagt-------------------------------------------gggagattttga----------ttcagattgcctg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53110310 1247 + 80904711 ttgcctcttag-----------------------------------aattgcat--c---ctttgcaggttacttaatctgagtctcagttttccttatctgtgt-catggg----ata---aaggtatctatcccgtgaagttactgtgaggc--ttaaatgagCATAGTGCCTCTCACTGGATGAATGCTCAGCTATTGTTCTCCTAGGTATTCTCTGCAGGACCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGGACGCATGGTGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGTGG--GGTACAGTGAAGGATCAGGTTGAAGTGTAGATCCTG--------TAGGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------CGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATGAAATGAGAATTAAAACCTGCTGGAATGCTTAAGTGACCATGGCCTGGAGGTT--TCTCTCGCTCTGCTTCT----CCCTCC----------CTGTCTCTGGAGGCTGCTGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGGGACAACACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATA-CTGGGTAAACGGCAGTACTTGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCCTGGA--T--ATGGAAGAGGGCTTAACATCTCAGAGCCTGACTTATCAGTGACATA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCACAAAAGGCGGAAGTTTGTAACCTTGCCATTTTTTCGATCGCTGAAACACAGGCACCATTAGAGAATTCGCAAAGGGCAGAAGTCTGTAACCCTGCCGTTTTCTCAATCTGGGTGCTGACCTGAACAGCGAACCATTCTTCGGCTTCTCTGCGATTGTTGGCAAGCACTGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGCTGACTTCCTGAAAGTGG-GATGGCATAAAG-ATGTCACAGAATGATGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTGTGG---AGTAGTAGGTAAAAGT-------------------------------------------GTGAGATTTTGA----------TTCAGGTTGTCtg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52634556 1179 + 80997621 ttgcctcttag-----------------------------------aattgcat--c---ctttgcaggttacttaatctgagtctcagttttccttatctgtgt-catggg----ata---aaggtatctatcccgtgaagttactgtgaggc--ttaaatgagCATAGTGCCTCTCACTGGATGAATGCTCAGCTATTGTTCTCCTAGGTATTCTCCGCAGGATCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGGACGCATGGTGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGTGG--GGTACAGTGAAGGATCAGGTTGAAGTGTAGATCCTG--------TAGGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------CGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCTGGAATACGTAAGTGACCATGGCCTGGAGGTT--TCTCTCGCTCTGCTTCT----CCCTCC----------CTGTCTCTGGAGGCTGCTGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGGGACAACACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATA-CTGGGTAAACGGCAGTACTTGGGAAAGGCAAGGAAATGTGA--------------------------------------------------TCCCTGGA--T--ATGGAAGAGGGCTTAACATCTCAGAGCCTGACTTATCAGTGACATA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCACAAAAGGCGGAAGTCTGTAACCTTGCCATTTTTTCG---------------------------------------------------------------------ATCTGGGTGCTGACCTGAACAGCGAACCATTCTTCGGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGCTGACTTCCTGAAAGTGG-GATGGCATAAAGAATGTCACAGAATGATGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTGTGG---AGTAGTAGGTAAAAGT-------------------------------------------GTGAGATTTTGA----------TTCAGGTTGTCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47677955 1182 + 74645514 TTGCCTCTTAG-----------------------------------AATTGCAT--C---CTTTGCAGGTTACTtaatctgagtctcagttttccttATCTGTGT-CATGGG----ATA---AAGGTATCTATCCCGTGAAGTTACTGTGAGGC--TTAAATGAGCATAGTGCCTCTCACTGGATGAATGCTCAGCTATTGTTCTCCTAGGTATTCTCCGCAGGATCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACAGGTTCATGTCATCTTGGACGCATGGTGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGTGG--GGTACAGTGAAGGATCAGGTTGAAGTGTAGATCCTG--------TAGGGAAACTGTAGGatgaaatgtttgaaaa-----------------------------tgatTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCTGGAATGCTGAAGTGACCATGGCCTGGAGGTT--TCTCTCGCTCTgcttct----ccctcc----------ctgtctctggAGGCTGCTGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGGGACAACACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATA-CTGGGTAAACGGCAGTACttgggaaaggcaaggaaatgtgA--------------------------------------------------CCCCTGGA--T--ATGGAAGAGGGCTTAACATCTCAGAGCCTGACTTATCAGTGACATA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCACAAAAGGCAGAAGTCTGTAACCCTGCCGTTTTCTCA---------------------------------------------------------------------ATCTGGGTGCTGACCTGAACAGCGAACCATTCTTCGGCTTCTCTGCGATTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACACTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGTTGACTTCCTGAAAGTGG-GATGGCATAAAGAATGTCACAGAATGATGGGGAAAAA----TCCATTTGACATC----------CAATGGCATTCTACTTCTGTTTTGTGGAGTAGTAGTAGGTAAAAGT-------------------------------------------GTAAGATTTTGA----------TTCAGGTTGTCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9945232 1181 - 75148670 ttgcctctcag-----------------------------------aattgcat--c---ctttgcaggttacttaatctgagtctcagttttccttatctgtgt-catggg----gta---aaggtatctatcccgtgaagttactgtgaggc--ttaaatgagCATCGTGCCTCTCACTGGATGAATGCTCAGCTATTGTTCTCCTAGGTATTCTCCGCAGGACCTAATGACATGCA-----CACAGTGGTGCTTGACCAGAACTGGTTCATGTCATCTTGGACGCATGGTGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GGTGG--GGTACAGTGAAGGATCAGGTTGAAATGTAGATCCTG--------TAGGGAAACTGTAGGATGAAATGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATAACAGTGAGCCTGGAAAACTGGCC-TGAATCAAATGAGAATTAAAACCTGCTGGAATGCTTAAGTGACCATGGCCTGGAGGTTtctctctcgctctgcttct----ccctcc----------ctgtctctGGAGGCTGCTGCAGCAT-CAGACTCAAGCCCAGGAGTGAAGGT-AAGGCATCTTAGAGGGACAACACAAGCTGTGGACCTGTCACTTCTGCTTCTATTAATA-CTGGGTAAACGGCAGTACTTGGGAAAGGCAAGGAAATTTGA--------------------------------------------------TCCCTGGA--T--ATGGAAGAGGGCTTAACATCTCAGAGCCTGACTTATCAGTGACATA-ACGGACACTGCCTTTGCCTCACGCACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCCGTCTGGCAGCCCTGCAGCTGCTCCGCACTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGCACCATTAGAGAATTCACAAAAGGCAGAAGTCTGTAACCTTGCCGTTTTCTCA---------------------------------------------------------------------ATCTGGGTGCTGACCTGAACAGCGAACCACTCTTCAGCTTCTCTGCGGTTGTTGGCAAGCACCGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTGTCCAGCTCCACATTGAGGCGGTCGCCAAGCTGTCCACGAAGCAAGTTGACTTCCTGAAAGTGG-GATGGCATAAAGAATGTCACAGAATGATGGGGAAAAA----TCCATTTGATATC----------CAATGGCATTCTACTTCTGTTTTGTGG---AGTAGTAGGTAAAAGT-------------------------------------------GTGAGATTTTGA----------TTCAGGTTGTCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112817964 1168 + 159171411 ttgcctcttag-----------------------------------aattacat--c---ctttgcaaattacttaatctgagtctccgttttccttatctgtgt-tatggg----ata---aaggtatctattccataaagttattgtgaggc--ttaaatgagCATGGTGCCTCTCACAGGATGAATGCTCAGCTATCATTCTTCTAGGTACTCTCTGCAGGACCTAATGAAATGCA-----CACAGTGGTGCTTGACCAGAACGGGTGAATGTAATCTTGAACGCATGGTGTTCTTGTT------------------------------------------GCTTGA-----------------------------------------------------------------------------------GTGG---GCTGG--GAGGCAGTGAAGTGTCAGGTTGAAGTATAGATCCC-----------AGGAAATGGTAGGATGAAACGTTTGAAAA-----------------------------TGATTCTTTGTTTTAGATATGACAGTGAGCCCGGAAAACTGGCC-TGAATCAAAGGAGAATTAAAACCTGCTGGAATGCGTAAGTGACCTTGGCCTGGAGGTC----------TCTGCTTCC----CCCTCC----------CTGTCTCTGAAAGCTGCCGAAGCAT-CAGACTCAAGCCCAAGAGTGAAGGC-GAGGCATCTTAGAGA-GCAATACGAGCTGTCGACTTGTCACTTCTGCTTCTATTAATAGCTGGGTAAATGACAGTACTTGGGAAAGGCAAGGAAATATGA--------------------------------------------------TCCCCAGA--T--ATGGAAGAGGGCTTAACATCTCAGGGCCGGACTTATCAGTGACACA-ACAGACACTGCCTTTGCCTCACACACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAAGATCTCTGTCTGGCAGCCCTGCAGCTGCTCCGCGCTGGACAGTTGCTGCTGATTCAGCTCTTCTGTCTGAAACACAGGTACCATTAGAGAATTCAAAAAAGGCAGAAGTCTGTAAGCCTGCCATTTTTTTG---------------------------------------------------------------------ATCTGGGTGCTGACCTGAACAGCGAACCATTCTTCTGCTTCTCTGCGGTTGTTGGCCAGCACGGTTTCATACTGACAGCGCATCTCATCCAGGACCCTGTTGAGGTCAAGGGTGGGGGCAGTATCTAGCTCCACACTGAGGTGGTCGCCAAGCTGTCCACGAAGCAAGTTGACCTCCTGAAAGTGG-AATGGTGTAAAGAATGTCACAGAATGGTGAAAAAAAA----TCCATTTGACATC----------CAATAGCGCTCCACTTCTGTTTTTTGG---AGtagtgggtaaaagt-------------------------------------------gtgagattttta----------ttcagattgccta i calJac3.chr5 C 0 C 0 s mm10.chr11 99539157 1268 + 122082543 TTTCTACTGAG-----------------------------------AACTGCAG--CACATTCTGGAACTTTCTTCCTTTGACCCTAGCTTTCCCCCACCTGTTCACCCGGG----CTAGTGAAGGTGTCTG--CCATAGATT---------------------GCACCATGCCTCTC-CTAGGTGGATGCTCAGGTGACGTTCATCTAGGTAAACTCCTTGG------ATGAAGCTCAACTGGTACCACAGTGCCTGATGGGACCTGGTATACGTGACTTTCACTGCATGGTGTTCTTGT---------------------------------------------GTGG-----------------------------------------------------------------------------------GTGG---GGAGG--GCTATGG-------------TGATGTGCGGGTCTT---------------AGCTGTTGTATG-ACCACTTGAAACTTGATGTGGTTtttttttgtttgtttgtttgtttttttgtttTAGACACTACGGTGAATCTGTAAAACTGTTCATCGATTAGAGGA-AAGGAAAATCTGTTGCTAAGCTTAAGGGCCTTTGGCTCAGCTCTCCCTGTCCCACTGTG-TTCTGAGACTTTTC----------TTGTCTCTAGCTGATGGTATTGGAGACATGCTTAGGCTTAGGAGGGCCAGG-GAGGCACCCTGGTGAGAGGACAAAGCCCGTTGATCTGTCA-TTCTGTTTCTACT-----GTGGACAAGTAACATATGTGAAGAAAGGGAGGGAAATGCCAGCTAGGCTAATTGGATACCCAGACCTGCTGC----TGAACTGTGAGCATCTCCCTGGACTT--CTGTCAAAGAGCATAGCATCTCTGGA-------TGCTGCTGACAAAGGCTGGCACTG--TTCATCCCACGCACCAGGGTTTGCTGCGCCTGGAGCTCAATTTCCAGAGTGTTGGCCTTGCGCTTCAACTCCAACATCTCAGTCTGGCAGCCCTCCAACTGCTCCGCGCTGGACTTCTGCTGCTGGTTCAGCTCTTCTGTCTGAAACAAAGGCCCCATTAGAGAGCTCAGGCAGGGCACCCTCCCGGAAGCCAGTCCTTTACCGA-------------------------------------------------------------------------GGGCACTGACCTGAGCAGCGAACCACTCCTCTGCATCCCTGCGGTTGTTGGCCAGCACCCTCTCGTATTGACATCGCATCTCATCCAGGACCTTGTTGAGGTCCACAGTGGGGGCAGTGTCCAGCTCCACGCTGAGCCGATCGCCAAGCTGCTCACGAAGCAGGTTGACCTCCTGTGGGTGGAAATGGAGTGAAGAATGTCAGAGTGCTCTGTGTGTGTG----TGTCTGTGATGTTAATGTGATGAAAAAAGCATTGCACTT-TGATTTTTGG---CACACTGGGTAAAAGTTCAGATTCTCTTGGTTAGGTCTCTTCTCATTACTTCTGTTTAAGAAAGATTTTAAAAATTTACATTTAAGTGTGCCTG i mm10.chr11 I 201 I 101 s canFam3.chr9 39360301 1392 - 61074082 ttgcctcttaacaactgcatgaaaaaaaaaaaaaaaaaaaaaaaaCaactgcatgac---ccctgc----tacttaatctgagtctcagtcttcctcatctg-at-aatgggtttagta---aaaggatttatcccatcaagttattatgaggCGTTTAA-----------GCCTCTCACAAGATAAATATGTAGCTATTATTCACCCAGATAGTCTCTATAGGCCCCAATGTGGCACA-----GACAGTGGTGTCTGACTGGAACTGGCTAATGTGATCTTCAATGCATGGTATCCtttttaaaaaaatttttttttaaaataaCCTCTATgcccagcatggggcttgaactcatgatcctgagatcaagagtcacatgctcctctgactgagccagccaggcTCCCCAGTGCATAGTATTTTCATTGCTGGGTGA---AATGG--GGTGGAGTGAAGGGTCCAGTTGAGGTGTGGATCCTGGAAAAGCTTAGGGTAGTGGAAGAATGCAAAGTTTGAATA-----------------------------TTATTCTTT------TATATGATGCTGAGTTTGAGAAGTTGGCC-CAAATCAAAGCACAATTAAAACCCACTGGAATGCTTCAGTGCCTTCAGCTCAGAGGTTCCACTCTCATTCTGCTCCTG---CCCTCCTGTTCTTTTTCTGTCTCTGGAAGGTGCTGCAGGAT-CATGCTCAAGCCCAGGAGGGAAGGTCAGGGAATCCTGTTGGGACAGTACAGACTGTTGACCTATCACTTCTGCTTCTAG------CTCAGTAAACAGCAGTATTTGGGTAAGTCAAAG-AATACAATCCTTGCATATTGGAAATTCAGACTTTCTGCCACATGAACTGTGGATCTCTCCTTGGG--TTCATGGAAGAGGGACTAGCATCTCAGGGCTTAATTCTTCAGTGACAAA-AACAGAGCTGTCTTTCCCTTACATACCAGGCTTTGCTGTGCTTGGAGCTCAATTTCCAGAGCATTGGCTGTGCGTTTCAGTTCCAGGATCTCTGTCTGGCAGTCTTGCAGCTGCTCTGCGCTGCACAGCTGCTGCTGATTCAGCTCCTCTGTCTGTAAACCAGGTATGATTAGAGGATGCAAATAAGGCAGAAGTCTGGAAGCTTGTCATTTTCTTG---------------------------------------------------------------------CTCTGGGTACTGACCTGAACAGCAAACCATTCTTCCACGTCTCTACGGTTGTTGGCCAGCACGGTTTCATACTGACAACGCATCTCTTCCAGGACCCTGTTGAGGTCGATGGTGGGGGCAGTGTCCAGCTCTACACTGAGTCGGTCACCCAACTGTCCACGAAGCAAGTCAACCTCCTGAAAGAGGAAATGGAGTAAAGAAAGTCACAGAGTGGTGGGGAAGAAGAATTCACCTTGACATC---------CCAAGAGCATCCAATTTC-------TGG---AGAAGTGAGTAAAAGT-------------------------------------------GTGGGATTTAGA----------TTCAGATTGCTTA i canFam3.chr9 C 0 C 0 a score=1757934.000000 s hg38.chr17_JH159146v1_alt 130674 485 + 278131 ggctgaat--------------ctcttttcaccacttagaagggcctcagtttcttcgtctgtaaaatggacataataat-tggacatttttccagaaagttattgtgagatctagaagagtcaatctacacataattaacttataaaagttaattatgacacatagtaaggtgtcaataaatgttagctatgattGTCATCAACAAACGTTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCA---------------ATAT------ATCAGTGGCTGTATATTTTATGATTTTTAGAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGATAGTGCAC-AGTCTTTATCCCTTTTTTGAAATGGACTTCACAGTC--TGTTC-CTCAGCCTGATTTTCATACCCTGTGGACTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTT----ACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA s panTro4.chr17 66251195 485 - 82630442 ggctgaat--------------ctcttttcaccacttagaagggcctcagtttcttcgtctgtaaaatggacataataat-tggacatttttccagaaagttattgtgagatctagaagagtcaatctatacataattaacttataaaagttaattatgacacatagtaaggtgtcaataaatgctagctatgattGTCATCAACAAATGTTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCA---------------ATAT------ATCAGTGGCTGTATATTTTATGATTTTTAGAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGATAGTGCAC-AGTCTTTATCCCTTTTTTGAAATGGACTTCACAGTC--TGTTC-CTCAGCCTGATTTTCATACCCTGTGGACTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTT----ACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24783931 484 - 73212453 ggctgaat--------------ctcttttcaccacttagaagggcctcagtttcttcatctgtaaaatggacataataat-tggacatttttccagaaggttattatgagatctaga--agtcaatctacacataattaacttataaaagttaattatggcacataataaggtgtcaataaatgttagctatgattGTCATGAACAAATGTTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTCTCATTTTCTAGCTTTATCA---------------ATAC------ATCAATCGCTTTATGTTTTATGATTTTTAGAAGTTTATAAATGCCGAATATTTAAAAACACTCGTCGAGATAGTGCATGAGTCTTTATCCCTTTTTTGAAATGGACTTCACAGTC--TGTTT-CTCAGCCTGATTTTCATACCCTGTGGATTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTT----ACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48006428 485 - 81552678 ggctgaat--------------ctcttttcaccacttagaagggcctcagtttcttcgtctgtaaaatggacataataat-tgtacatttttccagaaggctattgtgagatctagaagggtcaatctacacataattaacttacaaaagttaattatggcacatagtaagctgtcaataaatgttagctatgattGTCATCAACAAATGTTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCA---------------ATAT------ATCAATTGCTTTATATTTTATGATTTTTAGAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGGTAGTGCACGAGTCTTTATCCCTTTTTTGAAATGGACTTCACAGTC--TGTTT-TTCAGCCTGATATTCATACCCCATGGATTGGAGCTAGGGGTGGCATAAAGCCTCCAAA-GAAGCCATTTGTGAAGTT----ACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53111557 490 + 80904711 ggctgaat--------------ctcttttcaccacttagaagggcctcaatttcttcgtctgtaaaatggacataataat-cggacatttttccagaaggttattgtgagatctagaagagttaatctacacataattaacttataaaagttaattatgacacatagtaaggtgtcaataaatgttagctatgattGTCATCAACAAATATTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCG---------------ATGT------ATCAATCACTTTATATTTTATGACTTTTAAAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGATAGTGCATGAGTCCTTATTCCTTTTTTGAAACGGACTTCACAGTC--TGTTT-CTCAGACTGATTTTCATACCTTGTGGATTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTTACTCACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52635735 490 + 80997621 GGCTGAAC--------------Ctcttttcaccacttagaagggcctcaatttcttcgtctgtaaaatggacataataat-cggacatttttccagaaggttattgtgagatctagaagagttaatctacacataattaacttataaaagttaattatgacacatagtaaggtgtcaataaatgttagctatgattGTCATCAACAAATATTCAAAGAGCA----AACGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCA---------------CTGT------ATTAATCACTTTATATTTTATGACTTTTAAAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGATAGTGTATGAGTCCTTATCCCTTTTTTGAAACGGACTTCATAGTC--TGTTT-CTCAGACTGATTTTCATACCTTGTGGATTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTTACTCACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47679137 505 + 74645514 GGCTGAAT--------------CTCTTTTCACCACTTAGAAGGGCCTCAATTTCttcgtctgtaaaatggacataataat-CGGACATTTTTCCAGAAAGTTATTGTGAGATCTAGAAGAGTTAATCTACACATAATTAACTTATAAAAGTTAATTATGACACATAGTAAGgtgtcaataaatgttagctatgatTGTCATCAACAAATATTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGcttttcattttctagctttatcaatcactttatattttatgt------atcaatcactttatattttatgacttttaaaagtttataaatgcGGAATATTTAAAAACACTGGTCCAGATAGTGCATGAGTCCTTATTCCTTTTTTGAAACGGACTTCACAGTC--TGTTT-CTCAGACTGATTTTCATACCCTGTGGATTGGAGCTAGGGGTGGCATAAAGCCTCCAAAGGAAGCCATTTGTGAAGTTACTCACCTCCTCCACAAaggcaagggcaggagaaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9946413 490 - 75148670 GGCTGAAT--------------Ctcttttcaccacttagaagggcctcaatttcttcgtctgtaaaatggacataataat-tggacatttttccagaaagttattgtgagatctagaagagttaatctacacataattaacttataaaagttaattatgacacatagtaaggtgtcaataaatgttagctatgattGTCATCAACAAATATTCAAAGAGCA----AATGTACTTTGTTACATCATTCAGCTTTTCATTTTCTAGCTTTATCG---------------ATGT------ATCAATCACTTTATATTTTATGACTTTAAAAAGTTTATAAATGCGGAATATTTAAAAACACTGGTCCAGATAGTGCATGAGTCCTTATCCCTTTTTTGAAACGGACTTCACAGTC--TGTTT-CTCAGACTGATTTTCATACCCTGTGGATTGGAGCTAGGGGTGGTATAAAGCCTCCAAAGGAAGCCATTTGTAAAGTTACTCACCTCCTCCACAAAGGCAAGGGCAGGAGAAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112819132 485 + 159171411 ggctgaat--------------ctcttttcaccacttacaagggtctcagttgcttcatctgtaaaatgggcataataat-tggacatttctcccaaaggttattgtgagatctagaagaattaatctacatataattaacttataaatg----tcctggcacatagtaagttctcgataaatgttagctatgattGCCATCAAAAAATGTTCAAAGAGCA----AATGTAATTTGTTACGTCATTCAGCTTTTCATTTTCTAGCTTTATTA---------------ATAT------ATCAATTGCTTTATATTTTATGAGTTTTAAAAGTTTATAAATGTGGAATATTTAAAAACACTGGTCCAGATAGTGCACGGGTCTTTCTCTC-TTTTTGAAATGGCCTTCACAGTC--TGTTT-CTCAGCCTGATTTTTATAGCCGGTGGATTGGAATTAGGAGTGGCATAAAACCTCCAAGGAAAGCCATTTGTGGAGTTATTCACCTTCTCCACAAAGGCAGGGGCAGGAGAAGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99540526 447 + 122082543 TGCTGAGTCATTTTCCCATCCCCTCTTTCCATTAGGTTTAAAtgtctcagcttcttcctctgcaaaatgggtgtaatattgtgtaccctttcccagagggttattgtgagacagggaagagttagtacaCACACAATAAATCTATAAAAT----TGATGACCCACGCTAAGGTATCCATAATTGCCAGCTATTGTTACCATCA--AAATATTCAGAGTGAACTTTGTTTTACTTTGTTACATCATT-----------------------------------------CTGT------AT-------TTCGTAGTTTATGATACAAACACGATTATAAATGCACAGTACCTGAAAACATGATCCCAAATATTGCATGATTATTTGTCCCTCTTTTGGAATGGGATACGCAGCC--TGTTTAATCAGCTCAATTTTCTT--CTTATACA-----------------ATAGAGCTTACGGAGAAAACCACGAGTCGGATT----ACAT-CTTTACCCAAGCAATGGCAGGAGAAAG i mm10.chr11 I 101 C 0 s canFam3.chr9 39361693 461 - 61074082 GGTTGAct--------------ctcttttcatca-----------ttcagtctctgcatccacaaaaggtgtataataat-tttac-ctttcctagagagttattgtgaga--gatatgagttgatgttcatataaagcacttatgaaagt---ccttggcacataggaaggtctcaataaatgcta-------ttatcatCAACACATGCTCAAAGGGAA----AATATACCATTTTACATCATTAAGTTTTTCACTTTTTAGCTTTATCA---------------ACATGAGATAGTCATATACTTCGTATTTTATGA-TTTAGAAAGTTTATAGATGTAGAATATTTTAAAATATTGGTCCAAATATTGCATAAGATGTTATCCCCTTTCTGAAATGGCCTTCATGCCCTGTGTTT-ATCAGCCTGATTTTTGTAGCTTATGGATTAGAGTTAT--GTGGCATAAAGCCTCCAAGGAAAGCCATTTGTAAAGTT----ACCTCCTTCACGAAAGCAATAGCAGG------ i canFam3.chr9 C 0 I 90 a score=260866.000000 s hg38.chr17_JH159146v1_alt 131159 92 + 278131 GTTTGATTCCTTCCTCTGGCGCTGTCTAGGGGTTA-------------------------------------TTTCACACCTTAAATCAGAGACACACTGGAATGATCAGGTTGAATAGTAATAATGCC s panTro4.chr17 66251680 92 - 82630442 GTTTGATTCCTTCATCTGGCACTGTCTAGGGGTTA-------------------------------------TTTCACACCTTAAATCAGAGACACACTGGAATGATCAGGTTGAATAGTAATAATGCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24784415 92 - 73212453 GTTTGATTCCTTCGTCTGGCACTGTCTAGGGGCTA-------------------------------------TTTCACACCTTAAATCAGAGACACACTGGAATGATCAGGTTGAATAGTCATAATGCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48006913 92 - 81552678 GTTTGATTCCTTCGTCTGGCACTGTTTAGGGGCTA-------------------------------------TTTCACACCTTAAATCAGAGACACACTGGAATGATCAGGTTGAATAGTAATAATGCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53112047 129 + 80904711 GTTTGGTTCCTTTGTCTGGCACTGTCTAGGGGCTATTTCACATGTTAATTCAGAGACACGCTGATTCCAGCGTTTCACATGTTAATTCAGAGACACGCTGGAATGATCAGGTTGAATAGTAATAATGCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52636225 92 + 80997621 GTTTGGTTCCTTTGTCTGGCACTGTCTAGGGGCTA-------------------------------------TTTCACATGTTAATTCAGAGACATGCTGGAATGATCAGGTTGAATAGTAATAATGCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47679642 92 + 74645514 gtTTGGTTCCTTTGTCTGGCACTGTCTAGGGGCTA-------------------------------------TTTCACATGTTAATTCAGAGACACGCTGGAATGATCAGGTTGAATAGTAATAATGCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9946903 92 - 75148670 GTTTGGTTCCTTTGTCTGGCACTGTCTAGGGGCTA-------------------------------------TTTCACATGTTAATTCAGAGACACGCTGGAATGATCAGGTTGAGTAGTAATAATGCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112819617 91 + 159171411 GTTTGATTTCTTTGTCTGGCACTGGCCAGGGG-TA-------------------------------------TTTCACATCTTAATTCAGAGACACACTGGAATGATCAGGCTGAGCAGTAATAATGCC i calJac3.chr5 C 0 C 0 s mm10.chr11 99540973 51 + 122082543 AGTGGCCTCACCTCCCTGGCACTG-CTGAGGGTTG-------------------------------------TCTTACA----------------------------------------TAATGATACC i mm10.chr11 C 0 I 63 e canFam3.chr9 39362154 90 - 61074082 I a score=37568.000000 s hg38.chr17_JH159146v1_alt 131251 17 + 278131 TCGAGTAG--TTtttgttt s panTro4.chr17 66251772 17 - 82630442 TCGAGTAG--TTtttgttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24784507 18 - 73212453 TCGAGTAG-TTTtttgttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48007005 18 - 81552678 TCGAGTAG-ttttttgttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53112176 18 + 80904711 TCGAGTAG-TTTTCCGCtt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52636317 19 + 80997621 TCGAGTAGTTTTTCCGCtt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47679734 18 + 74645514 TCGAGTAG-TTTCccgctt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9946995 18 - 75148670 TCGAGTAG-tttttcgctt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112819708 17 + 159171411 TTGAGTAG--TTTTAGTCT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39362154 90 - 61074082 I e mm10.chr11 99541024 63 + 122082543 I a score=726768.000000 s hg38.chr17_JH159146v1_alt 131268 304 + 278131 gtttgtttgtttgtttgttttttgagatggagtctcgccctgtcacccaggctggagtgcagtggtaagatctcggctcactgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctcccgagtagctaggactacaggcgcctgccaccatgcccagctaatttttgtatttttagtagagatgaggtttcatcatattggtcaggctggtctcgaactcctgaccttgtgatcctcctgcctcagcctcccaaagtgcttggattacaggtgtgagccaccatgcctggccC s panTro4.chr17 66251789 300 - 82630442 gtttgtttgtttgttt----tttgagatggagtctcgccctgtcacccaggctggagtgcagtggtaagatctcggctcactgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctcccgagtagctaggactacaggcgcctgccaccatgcccagctaatttttgtatttttagtacagatgaggtttcatcatattggtcaggctggtctcgaactcctgaccttgtgatcctcctgcctcagcctcccaaagtgcttggattacaggcgtgagccaccatgcctggccC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24784525 300 - 73212453 gtttgttcgtttgttt----tttgagatggagtctcgctctgtcacccaggctggagtgcagtggtgagatctcggctcactgcaacctccgcctcctgagttcaagtgattctcctgcgtcagcctcccgagtagctaggactacaggcgcctgccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggccaggctggtcttgaactcctgaccttgtgatcctcctgcctcggcctcccaaagtgctcggattacaggcgtgagccaccatgcctggccT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48007023 300 - 81552678 gtttgtttctttgttt----tttgagatggagcctcgctctgtcatccgggctggagtgcagtggtgagatctcagctcactgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctcccaagtagctaggactacaggcgcctgccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggcctggctggtctcgaactcctgaccttgtgaccctcctgcctcggactcccaaagtgcttggattacaggcgtgagccaccatgcctggccC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53112194 300 + 80904711 ttttgtttggttgttt----tttgagatggagtcttgctctgttgcccaggttggagtgcagtggcgagatctcggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcccgagtagctgggactacaggtacccaccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggccaggctggtctcaaactcctgaccttgtgatccacctgcctcggcctcccaaagtgctcagattacaggcatgagccaccgcgcttggccC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52636336 300 + 80997621 ttttgtttgtttgttt----tttgagatggagtcttgctctgttgcccaggttggagtgcagtggcgagatctcggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcccgagtagctgggactacaggtacccaccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggccaggctggtctcgaactcctgaccttgtgatctacctgcctcggcctcccgaagtgctcggattacaggcatgagccaccgcgcttggccC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47679752 300 + 74645514 ttttgtttgtttgttt----tttgagatggagtcttgctctgttgcccaggttggagtgcagtggcgagatctcggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcctgagtagctgggactacaggcacccgccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggccaggctggtctcgaactcctgaccttgtgatccacctgcctcagcctcccaaagtgctcggattacaggcatgagccaccgcgcttggccc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9947013 300 - 75148670 ttttgtttgtttgttt----tttgagatggagtctcgctctgttgcccaggttggaatgcagtggtgagatctcggctcactgcaacctccgcctcctgggttcaagctattctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccatgcccagctaatttttgtatttttagtagagatggggtttcatcatattggccaggctggtctcgaactcctgaccttgtgatccacctgcctcggcctcccaaagtgctcggattacaggcatgagccaccgcgcttggccC i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39362154 90 - 61074082 I e mm10.chr11 99541024 63 + 122082543 I e calJac3.chr5 112819725 0 + 159171411 C a score=20509.000000 s hg38.chr17_JH159146v1_alt 131572 8 + 278131 TGCCTCAA s panTro4.chr17 66252089 8 - 82630442 TGCCTCGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24784825 8 - 73212453 CGCCTCGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48007323 8 - 81552678 TGCCTCAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53112494 8 + 80904711 TGCCTGGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52636636 8 + 80997621 TGCCTGGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47680052 8 + 74645514 tGCCTGGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9947313 8 - 75148670 TGCCTGGA i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39362244 8 - 61074082 TGCCTCGA i canFam3.chr9 I 90 C 0 e mm10.chr11 99541024 63 + 122082543 I e calJac3.chr5 112819725 0 + 159171411 C a score=46864.000000 s hg38.chr17_JH159146v1_alt 131580 13 + 278131 GTAGTTTTATTCC s panTro4.chr17 66252097 13 - 82630442 GTAGTTTTATTCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24784833 13 - 73212453 GTAGTTTTATTCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48007331 13 - 81552678 GTAGTTTTATTCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53112502 13 + 80904711 GTAGTTTTATTCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52636644 13 + 80997621 GTAGTTTTATTCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47680060 13 + 74645514 GTAGTTTTATTCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9947321 13 - 75148670 GTAGTTTTATTCC i chlSab2.chr16 C 0 C 0 s mm10.chr11 99541087 13 + 122082543 TTAGGTCTGTTCC i mm10.chr11 I 63 C 0 s canFam3.chr9 39362252 13 - 61074082 GTAATTTTGTTCC i canFam3.chr9 C 0 C 0 e calJac3.chr5 112819725 0 + 159171411 C a score=1774441.000000 s hg38.chr17_JH159146v1_alt 131593 450 + 278131 AGCTTAAACAACATCTGCCCAAATTCGATTTACAAACATCAACAGATCATCTGTCAATG-TAAGTACGTTACTCTCGGAGTCCTTCAGCGGAGTTGCCACTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATCAGATTTGCACAGGGTCAGTTCCTCCAGGATCCCATGCAGGCTGCTGATGTCAGCCTCTAACAGCTGGCGAAGGGACAGTTCACTCTCGTACCTTTCA---CAGCAAAAGAGAAATCCA--ACGCTTACTTTGCTGAACGCTGTGCAAAGTGTGGGGATACATGGAGGATCGACACACGGACTTCAGGAAGCCATGTGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTAACT-TTAAAATA--TTATATAGAGAATATTt s panTro4.chr17 66252110 450 - 82630442 AGCTTAAACAACATCTGCCCAAATTCGATTTACAAACATCAACAGATCATCTGTCAATG-TAAGTACGTTACTCTCGGAGTCCTTCAGCGGAGTTGCCACTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATTAGATTTGCACAGGGTCAGTTCCTCCAGGATCCCATGCAGGCTGCTGATGTCAGCCTCTAACAGCTGGCGAAGGGACAGTTCACTCTCGTACCTTTCA---CAGCAAAAGAGAAATCCA--ACGCTTACTTTGCTGAACGCTGTGCAAAGTGTGGGGATACATGGAGGATCGACACATGGACTTCAGGAAGCCATGTGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTAACT-TTAAAATA--TTATATAGAGAATATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24784846 449 - 73212453 AGCTTAAACAACATCTGCCCAAATTCGATTTACAAACATCAACAGATCATCTGTCAGTG-TAAGTACGTTACTCTTGGAGTCCTTCAGCGGAGTTGCCACTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATCAGATTTGCACAGGGTCAGTTCATCCAGGATCCCATGCAGGCTGCTGATGTCAGCCTCTAACAGCTGGCGAAGGGACAGTTCACTCTCGTACCTTTCA---CAGCAAAAGAGAAATCCA--ATGCTTACTTTGCTGAATGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGACACATGGACTTCAGGAAGCCATGTGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTAACT-TTAAAATA--TTATATAGAGAATATT- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48007344 450 - 81552678 AGCTTAAACAACATCTGCCCAAATTCGATTTACAAACATCAACAGATCATCTGTCAGTG-TAAGTACGTTACTCTCGGAGTCCTTCAGCTGAGTTGCCACTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATCAGATTTGCACAGGGTCAGTTCATCCAGGATCCCATGCAGGCTGCTGATGTCAGCCTCTAACAGCTGGCGAAGGGACAGTTCACTCTCGTACCTTTCA---CAGCAAAAGAGAAATCCA--ACGCTTACTTTGCTGAATGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGATACATGGACTTCAGGAAGCCATGTGCAT-AATTTCTCTTAATTTCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTAACT-TTAAAATA--TTATATAGAGAATATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53112515 451 + 80904711 AGCGTAAGCAACATCTGCCCAAATTTGATTTACAAACATCAACAGATCATCTGTCAGTGTTAAGTACGTTACTCTCGGAGTCCTTCAGTGGCGTTGCCGCTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATTTTCCTTCAGAGACTCCACATGGGCCTCCACATCAGATTTGCACAGGGTCAGCTCATCCAGGATCCCATGCAGGCCACTGATGTCTGCCTCTAATAGCTGGCGAAAGGACAGTTCACTCTCGTACCTTTCA---CGGCAAAAGAGAAATCCA--ATGCTTACTTTGCTGAATGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGACACATGGACTTCAGGAAGCCACATGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTGACT-TTAAAATA--TTATATAGAGAATATTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52636657 451 + 80997621 AGCTTAAGCAACATCCGCCCAAATTTGATTTACAAACATCAACAGATCATCTGTCAGTGTTAAGTACGTTACTCTCGGAGTCCTTCAGTGGCGTTGCCGCTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCACATCAGATTTGCACAGGGTCAGCTCATCCAGGATCCCATGCAGGCCACTGATGTCTGCCTCTAATAGCTGGCGAAAGGACAGTTCACTCTCGTACCTTTCA---CGGCAAAAGAGAAATCCA--ATGCTTACTTTGCTGAACGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGACACATGGACTTCAGGAAGCCACATGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTGACT-TTAAAATA--TTATATAGAGAATATTt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47680073 451 + 74645514 AGCTTAAGCAACATCCGCCCAAATTTGATTTACAAACATCAACAGATCATCTGTCAGTGTTAAGTACGTTACTCTCGGAGTCCTTCAGTGGCGTTGCCGCTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATCAGATTTGCACAGGGTCAGCTCATCCAGGATCCCATGCAGGCCACTGATGTCTGCCTCTAATAGCTGGCGAAAGGACAGTTCACTCTCGTACCTTTCA---CGGCAAAAGAGAAATCCA--ATGCTTACTTTGCTGAACGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGACACATGGACTTCAGGAAGCCACATGCAT-AATTTCTCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTcttgact-ttaaaata--ttatatagagaatattt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9947334 451 - 75148670 AGCTTAAGCAACATCCGCCCAAATTTGATTTACAAACATCAACAGATCATCTGTCAGTGTTAAGTACGTTACTCTCGGAGTCCTTCAGTGGCATTGCCACTTTCCTTACCTCTTCATGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGATCAGATTTGCACAGGGTCAGCTCATCCAGGATCCCATGCAGGCCACTGATGTCTGCCTCTAATAGCTGGCGAAAGGACAGTTCACTCTCGTACCTTTCA---CGGCAAAAGAGAAATCCA--ATGCTTACTTTGCTGAACGCTGTGCAAAGTGTGGGGATACGTGGAGGATCGACACATGGACTTCAGGAAGCCACGTGCAT-AATTTATCTTAATTCCTAAGTAATGATAAATTCAAGCTTTTAAAACATTCTTGACT-TTAAAATA--TTATATAGAGAATACTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112819725 450 + 159171411 AGCTTAAGCAACATCTGCCCTAGTTCTATTCACAAACATCAACAGATCATCTGTCAGTG-TAACTATGTCACTCTTGGAGTCCTTCAACGGAGTTGCCACTTTCCTTACCTCTTCATGGGTTTTCTTAAGGCAAAGAAGATCTTCCTTCAGAGACTCCACATGGGCCTCCAGGTCGGATTTGCACAAGGTCAGCTCATCCAGGATTCCATGCAGGCCGCTGATGTCAGCCTGTAACAGCTGGCGAAGGGACAGTTCACTGTCGTACCTTTCA---CAGCAAAAGAGAAATCCA--ACACTTATTCTGTTGAATGCTGTGCAAAGTGTGAGGATACATGGAGGATCGACATATGAATTTCAGGAAGCCACATGCAG-AATTTCTCTTAATTCCTGAGTAATGATAAATTCAAGCTTTTAAGACATTCTTAACT-TTAAGATA--TTATATAGAGAATATTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99541100 431 + 122082543 AGCTTAGGCAGTATTTGTCCCTGTTCAGTTTATACATATGAG------ATCTCTCAGCA------GAGCCCTTCCTGTAGT-CTTTGGCCCAGCGGCCACTTCGCTCACCTCTTCATGGCCTTTCTTAAGGCAAATCAGATCATCTTTCATAGACTCCACGTGGGCCTCTAGATCTGACTTGCACAGGGTCAGTTCACCCAGGATCCCACGAAGGCCAGTGATGTCGTTCTCCACCAGCTGGCGCAGGGACAGTTCGCTCTCATATCTTTCAGACAGGAGAAAGGGAGGGGAG--GGGCTTAGTCGGCTA----------AAAGTGCTGGGGTGCAGGGGAAGATGACACATGGACTCCAGGGAGCCACGTGCCTCAATTTCCCTTGCATTCCAAATGATGGTGAGTTCAAGGTTC--AATCATTCTCAGTTAAAAAAATA--TTATGCAGAGAATATTT i mm10.chr11 C 0 I 31 s canFam3.chr9 39362265 426 - 61074082 AGCTTTAGCAATATCTGCCCGAGTTTGATTTATATACACAAAACGAA-ATCTATCAGTT-TGACTTTGTCACCTCCACATTCATTCAGCAATTTTA-CACTTTCCTTACCTCTTTGTGGTTTTTCTTAAGGCAAAGGAGATCTTCCTTCAGAGACTCCACATGGGCCTCTAGATCAGCTTTGCACAGAGTCAGCTCATCCAGGATCCCACGCAGGCCACCAATGTCCGTCTCTATCAGCTGGCGAAGAGACAGTTCAGACTCATACCTTTCA---CAGCAAAAGAGATACAGATGGTGCTTATTTTGCTAGACACTGTGCAAGATGCTGGG-CATGCTGATGAATGACACAACGACTCAAGGAAGCTATAT-CCC-AATT------------------------AATGTGAGCTTTGTGAGCATTCTTAGCT-TAAAAAAAGCTTATGTAGAGAATATTT i canFam3.chr9 C 0 C 0 a score=56838.000000 s hg38.chr17_JH159146v1_alt 132043 35 + 278131 gt------------------------------------------------gtgtgtgtgtgtgt--------gtgagagagaga--gattgag s panTro4.chr17 66252560 37 - 82630442 TT------------------------------------------------GTGTGTGTGTGTga--------gagagagagagattgagagag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24785295 30 - 73212453 -----------------------------------------------------TGTGTGTGTGT--------GAGAGAAAGAGA--GAGAGAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48007794 37 - 81552678 GT------------------------------------------------GTGTGTGTGTgaga--------gggagagagagattgagagag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53112966 37 + 80904711 GT----------------------------------------------GGGTGTGTGTGTGTGT--------gagagagagaga--gattaag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52637108 37 + 80997621 gt----------------------------------------------gggtgtgtgtgtgtgt--------gagagagagaga--gattaag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47680524 45 + 74645514 gt----------------------------------------------gtgtgtgtgtgtgtgtctgtgagagagagagagaga--gattaag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9947785 33 - 75148670 --------------------------------------------------GTGTGTGTGTGTGT--------gagagagagaga--gattaag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112820175 83 + 159171411 GTGTGTGTGTGTGAGAGAAAGAGAGAgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgt--------gagagagagaga--gagagag i calJac3.chr5 C 0 C 0 s canFam3.chr9 39362691 40 - 61074082 -------------------------------------GTAgtgtgcatgtgtgtgtgtgtgtgt--------gtgtgtgtgtga--g------ i canFam3.chr9 C 0 C 0 e mm10.chr11 99541531 31 + 122082543 I a score=34859.000000 s hg38.chr17_JH159146v1_alt 132078 9 + 278131 agagagaga s panTro4.chr17 66252597 9 - 82630442 agagagaga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24785325 9 - 73212453 TGAGAGAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48007831 9 - 81552678 agagagaga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53113003 9 + 80904711 agagagaga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52637145 9 + 80997621 agagagaga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47680569 9 + 74645514 agagagaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9947818 9 - 75148670 agagagaga i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112820258 9 + 159171411 agagagaga i calJac3.chr5 C 0 C 0 s mm10.chr11 99541562 7 + 122082543 --aattata i mm10.chr11 I 31 C 0 s canFam3.chr9 39362731 9 - 61074082 agagagaga i canFam3.chr9 C 0 C 0 a score=-819.000000 s hg38.chr17_JH159146v1_alt 132087 1 + 278131 g-- s panTro4.chr17 66252606 1 - 82630442 g-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24785334 1 - 73212453 G-- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48007840 1 - 81552678 g-- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53113012 1 + 80904711 g-- i rheMac3.chr16 C 0 I 233 s macFas5.chr16 52637154 1 + 80997621 g-- i macFas5.chr16 C 0 I 8 s papAnu2.chr16 47680578 1 + 74645514 g-- i papAnu2.chr16 C 0 I 9 s chlSab2.chr16 9947827 1 - 75148670 g-- i chlSab2.chr16 C 0 I 10 s calJac3.chr5 112820267 1 + 159171411 g-- i calJac3.chr5 C 0 I 14 s mm10.chr11 99541569 3 + 122082543 att i mm10.chr11 C 0 C 0 e canFam3.chr9 39362740 0 - 61074082 C a score=105830.000000 s hg38.chr17_JH159146v1_alt 132088 39 + 278131 CCATAAGTTATTttcaaattaaaattaaagccgggcgtg s panTro4.chr17 66252607 39 - 82630442 CCATAAGTTATTTTCAAATTAAAATTAAAgccgggcgtg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24785335 39 - 73212453 CCATAAATTATTTTCAAATTAAAATTAAggccaggcgtg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48007841 39 - 81552678 CCAtaaattattttcaaattaaaattaaggccgggcgtg i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52637163 39 + 80997621 CCATAAATTATTTTCAAATTAAAATTAAggcggggtgtg i macFas5.chr16 I 8 C 0 s papAnu2.chr16 47680588 39 + 74645514 ccataaattattttcaaattaaaattaaggcggggcgtg i papAnu2.chr16 I 9 C 0 s chlSab2.chr16 9947838 39 - 75148670 CCAtaaattattttcaaattaaaattaaggcggggcgtg i chlSab2.chr16 I 10 C 0 s calJac3.chr5 112820282 39 + 159171411 CCATAAATTATTTTCAAAATAAAATTAAGCctgggtgtg i calJac3.chr5 I 14 C 0 s mm10.chr11 99541572 39 + 122082543 ttataaattattttctaattaaatttaaGATTTAGCATG i mm10.chr11 C 0 I 24 e canFam3.chr9 39362740 0 - 61074082 C e rheMac3.chr16 53113013 233 + 80904711 I a score=439204.000000 s hg38.chr17_JH159146v1_alt 132127 202 + 278131 gtggctcatgcctgtaatcccagcactttgggaggccaaggcggg-cagatca-cctgaggtcaggagttcgagaccaacctggcccacatggtgaaaccctgtctctactaaaaatacaaaaattagctaggt----gtggcggtgcacgcctgcctgtaatcccggctactcaggaggctgaggcaggagaaccacttgaacccag s panTro4.chr17 66252646 202 - 82630442 gtggctcatgcctgtaatcccagcactttgggaggccaaggcggg-cagatca-cctgaggtcaggagttcgagactaacctgacccacatggtgaaaccctgtctctactaaaaatacaaaaattagctaggt----gtggcggtgcacgcctgcctgtaatcccggctactcaggaggctgaggcaggagaaccacttgaacccag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24785374 204 - 73212453 gtggcccatgcctgtaatcccagcactttgggaggccaaggagttccaggccagcttgaagtcaggagtctgagaccagcctggcccacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggt----gtggtggtgcacgcctgcctgtaatcctggctactcaggaggctgaggcaggagatccgcttgaacccaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48007880 202 - 81552678 gtggctcatgcctgtaatcccagcactttgggaggccaaggcagg-cagatca-cctgaggtcaggagttcgagaccagcctttcccacatggtgaaaccccatctctactaaaaatataaaaattagccaggt----gtggctgtgcacgcctgcctgtaatcccggctactcgggaggctgaggcaggagaactgcgtgaatccag i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52637202 206 + 80997621 gtggctcatgcctgtaatcccagcactttgggaggccgaggcagg-tggatca-cctgaggtcaggagttcaagaccagcctgatccacatggtgaaaccccatctctactgaaaatacaaaaattagctgggtgcgggtggcggcgcacgcctgcctgtaatcccggctactcaggaggctgaggcaggagaatcgcttgaacccag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47680627 198 + 74645514 gtggctcatgcctgtaatcccagcactttgggaggccgaggcagg-tggatca-cctgaggtcaggagttcaagaccagcctggtccacatggtgaaaccccatctctactg--------aaaattagctgggtgtgggtggcggcgcatgcctgcctgtaatcctggctactcaggaggctgaggcaggagaatcgcttgaacccag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9947877 206 - 75148670 gtggctcatgcctgtaatcccagcactttgggaggccgaggcagg-cggatcc-cctgaggtcaggagttcaaaaccagcctggtccacatggtgaaaccccatctctactgaaaatacaaaaattagctgggtgtgggtggcggcgtacgcctgcctgtaatcccggctactcaggaggctgaggcaggagaatcgcttgaacccag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112820321 202 + 159171411 gtggctcatgcctgtaatcccagcactttgggaggccaaggcagg-cagatca-cctaaggtcaggagtttgagaccattctggccagcatggtgaaacctcttctctactaaaaatacaaaaattagctgggc----atggcagcacatgcctgtctgtaatcgcagctacctgggagactgaggcaggagactcgctcaaacgcag i calJac3.chr5 C 0 C 0 e canFam3.chr9 39362740 0 - 61074082 C e mm10.chr11 99541611 24 + 122082543 I e rheMac3.chr16 53113013 233 + 80904711 I a score=140697.000000 s hg38.chr17_JH159146v1_alt 132329 74 + 278131 gaggcagaggttgcagtgagctgagatagcaccattgagctctagcctgggtgacaagagtgaaactccatctc s panTro4.chr17 66252848 74 - 82630442 gaggcagaggttgcagtgagccgagatagcaccattgcgctctagcccgggtgacaagagtgaaactccttctc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24785578 74 - 73212453 gaggcagaggttgcagtgagctgagatagcaccattgtactctagcctgggtgactagagtgaaactccttctc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48008082 74 - 81552678 gaggcagaggttgcagcaagccgagatagcaccattgcactctagcctgggtgacaagagtgaaactccttctc i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52637408 71 + 80997621 gaagcagaggttgcagtgagccgagatagcgccattgcactctagcctgggcgacaagagtgaaactc---ctc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47680825 71 + 74645514 gaagcagaggttgcagtgagccgagatagcaccattgcaccctagcctgggcgacaagagtgaaactc---ctc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9948083 71 - 75148670 gaagcagaggttgcagtgagccgagatagcgccattgcactctagcctgggcgacaagagtgaaactc---ctc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112820523 72 + 159171411 gaggcggaggttgcagtgaaccatgatagtgccactgcactccagcctgagcaac--gagggaaactccacctc i calJac3.chr5 C 0 C 0 s canFam3.chr9 39362740 27 - 61074082 gagagagagaCAGCCATGA--------------ATTATTTT--------------------------------- i canFam3.chr9 C 0 C 0 e mm10.chr11 99541611 24 + 122082543 I e rheMac3.chr16 53113013 233 + 80904711 I a score=20564.000000 s hg38.chr17_JH159146v1_alt 132403 8 + 278131 aaaataaa s panTro4.chr17 66252922 8 - 82630442 aaaataaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24785652 8 - 73212453 aaaataaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48008156 8 - 81552678 aaaataaa i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52637479 8 + 80997621 aaaaTAAG i macFas5.chr16 C 0 I 5 s papAnu2.chr16 47680896 8 + 74645514 aaaataag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9948154 8 - 75148670 aaaacaag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112820595 8 + 159171411 aaaataaa i calJac3.chr5 C 0 C 0 s mm10.chr11 99541635 8 + 122082543 AAAATAAG i mm10.chr11 I 24 C 0 s canFam3.chr9 39362767 5 - 61074082 CAAAT--- i canFam3.chr9 C 0 C 0 e rheMac3.chr16 53113013 233 + 80904711 I a score=1333502.000000 s hg38.chr17_JH159146v1_alt 132411 348 + 278131 taaataaaataaaattaaattaaacttaCTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGTCAT---TATGTGATAAATGATTCTTTGAGAGAAACCTAAGTAAACTTCTATCCAACAGCTATGCCATTAGCTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATCACCCTCAGCCTGCTTTTTTTTATTAACCTTGTCACTTC-ATGAAGAAAAAAAG------CAGAGCCAATTTAGAAACAAAATAATGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACATTTT s panTro4.chr17 66252930 347 - 82630442 taaactaaattaaattaaattaaaCTTACTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGTCAT---TATGTGATAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGTTATGCCATTAGCTATCTTTTGAAAGTCTTTATAACAAAGTATAAAATCACCCTCAGCCTGCTTTTTTT-ATTAACCTTGTCACTTC-ACGAAGAAAAAAAG------CAGAGCCAATTTAGAAACAAAATAATGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACATTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24785660 347 - 73212453 taaattaaattaaattaaattaaaCTTACTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGTCAT---TATGTGATAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTATGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATCACCCTCAGCCTGCTTTTTTT-ATTAACCTTGTCACTTC-ATGAAGAAAAAAAG------CAGCGCCAATTTAGAAACAAAATAATGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACATTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48008164 347 - 81552678 taaattaaattaaattaaattaaacttactttgacttaaaGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGTCAT---TATGTGATAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTATGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATAACCCTCAGCCTGCTTTCCTT-ATTAACCTTGTCATTTC-ATGAAGAAAAAAAG------CAGCGCCAATTTAGAAACAAAATAATGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACATTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53113246 346 + 80904711 taaattaaattaaattaaattaaaCTTACTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGCCAT---TATGTGACAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTATGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATCACCCTCAGCCTGCTTTTCTT-ATTGACCTTGTCGCTTC-ATGAAG-AAAAAAG------CAGTGCCAATTTAGAAGCAAAATAGAGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACACTTT i rheMac3.chr16 I 233 C 0 s macFas5.chr16 52637492 346 + 80997621 taaattaaattaaattaaattaaaCTTACTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGCCAT---TATGTGACAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTATGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATCACCCTCAGCCTGCTTTTCTT-ATTGACCTTGTCGCTTC-ATGAAG-AAAAAAG------CAGTGCCAATTTAGAAGCAAAATAGAGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACACTTT i macFas5.chr16 I 5 C 0 s papAnu2.chr16 47680904 346 + 74645514 taaattaaattaaattaaattaaacttacTTTGACTTAAAGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGCCAT---TATGTGACAAATGATTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTATGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTATAAAATCACCCTCAGCCTGCTTTTCTT-ATTGACCTTGTCGCTTC-ATGaag-aaaaaag------cagtgccaatttagaagcaaaatagagaaataaaaaggtttagtttttta-aaaacat-aagacaCTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9948162 341 - 75148670 -----taaattaaattaaattaaacttactttgacttaaaGTCATCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCTTTCGTGCATAAGATCTGGGAAGCAAGCCAT---TATGTGACAAACGGTTCTTTGAGAGAAACCTAAATAAACTTCTATCCAACAGCTACGCCATTAGTTATCTTTTGAAAGTCTTTATAAGAAAGTAGAAAATCATCCTCAGCCTGCTTTTCTT-ATTGACCTTGTCGCTTC-ATGAAG-AAAAAAG------CAGTGCCAATTTAGAAGCAAAATAGAGAAATAAAAAGGTTTAGTTTTTTA-ATAACAT-AAGACACTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112820603 343 + 159171411 -----taaaTTAAATAAAATTCAACTCACTTTGACTTAAAATCCTCAGTGGCCAGTTTGCAGTTGTCAAGCTGTACAGCAAGTCTAGAATTCTCTGCCTTCGTGCATAAGATCTGTGAAGAAAGTCCT---TATTTAATAAAGTATTCTTTGAGAGAAACCTAAATAAACTACTATCCAACAGCTATGCCATTAGTTATCCTTTGAAAGTCTTTATAAGAAAGTGTAAAATGGCCGTTAG-CTGCTTTCCGT-ATTCACCGTGTCACTTG-ATGAAGCAAACAAG------CAGTGCCAATTCAGAAACAAAATAGAGACATAAAAAGGTTCACTTTTTTCTCTACCATCAAGACATTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99541643 333 + 122082543 --------------CACAATTTGACTTACTTTGACCTGAAATCATCAGCAGCCAGTTTGCAGTTGTCCACCTGAACGGCAAGTCTAGAATTCTCTGCCTTTGTGCACAATATCTAAGAGGTAAGTCAC---CATTTAATGAACAGCTCTTTAGAAGAAACCCACATA---TCTGTTTTAATAGCCATACCATTCACTAGTTTATGGAAGTCTTTCCAAGTTAACATAACATCTCTTTCAACCCAGGTTTCCT-ATTAACTACACCACTAC-ATGAAGGAAAGAAAAACATTCAGTGCCAACCTAGAAACAAAATACAGAAATAAAAGAGGT---TCTCTTC-GTAAAAG-GAAAGATTTT i mm10.chr11 C 0 I 421 s canFam3.chr9 39362772 335 - 61074082 --------------TCAAATTTAACTTACTTTGACCTAAAGTCATCAGCAGCCAGTTTGCAGTTGTCAAGTTGCACAGCAAGTCTGGAATTTTCTGCCTTCGTGCATAAGATCTGGTAAGTAAGTTAGTTATATATACTAGAGGGCTCTTTGAAAGAAACTTAAATATTTATTCATTTAACAACTATACCATTATTTATCTTTTAAAAGTCTTTATAAGACAGTATAAAATAGCTTGAAGCCTATTTTTCTT-ATTAAGCATGTCACTTCAATGAAG-AAAAAAG------CAGGACC-ATTCATAAAATAAATATAGAAATAAAAAGGGTCCGTTTTTCA-GTGGCCT-AAAACATTTT i canFam3.chr9 C 0 C 0 a score=107676.000000 s hg38.chr17_JH159146v1_alt 132759 38 + 278131 GCAACATTCTCAGGCAGTTG-AACACCATTAATGTTTTC s panTro4.chr17 66253277 38 - 82630442 GCAACATTCCCAGGCAGTTG-AACACCATTAATGCTTTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24786007 38 - 73212453 GCAACACTCCCAGGCAGTTG-AACACCATTAATGTTTTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48008511 38 - 81552678 GCAACATTCTCAGGCAGTTG-AACACCATTAACGTTTTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53113592 38 + 80904711 GCAACATCCCTAGGCAGTTG-AACACCATTAACGTTTTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52637838 38 + 80997621 GCAACATCCCTAGGCAGTTG-AACACCATTAACGTTTTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47681250 38 + 74645514 GCAACATCCCTAGGCAGTTG-AACACCATTAACGTTTTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9948503 38 - 75148670 GCAACATCCCTAGGCAGTTG-AACACCATGAACATTTTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112820946 39 + 159171411 GGCCTAGTCCTAGGCCGGGGAAACGCCATTAACGTTGTT i calJac3.chr5 C 0 I 112 s canFam3.chr9 39363107 34 - 61074082 GCAATATTCCTTGGCAGTTG-AAC----TTGGATTTTTC i canFam3.chr9 C 0 C 0 e mm10.chr11 99541976 421 + 122082543 I a score=51138.000000 s hg38.chr17_JH159146v1_alt 132797 13 + 278131 TCCATCAGTAGTT s panTro4.chr17 66253315 13 - 82630442 TCCATCAGTAGTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24786045 13 - 73212453 TCCATCAGTAGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48008549 13 - 81552678 TCCATCAGTAGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53113630 13 + 80904711 TCCATCAGTAGTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52637876 13 + 80997621 TCCATCAGTAGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47681288 13 + 74645514 TCCATCAGTAGTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9948541 13 - 75148670 TCCATCAGTAGTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112821097 13 + 159171411 TCCATCAGTAGTT i calJac3.chr5 I 112 C 0 s canFam3.chr9 39363141 13 - 61074082 TCCATAGGTAGTT i canFam3.chr9 C 0 C 0 e mm10.chr11 99541976 421 + 122082543 I a score=133521.000000 s hg38.chr17_JH159146v1_alt 132810 49 + 278131 TGTATTATGAGTATATCCTCTCCCATAATAATAGAAATTCATG---GAGAGA s panTro4.chr17 66253328 52 - 82630442 TGTATTATGAGTATATCCTCTCCCATAATAATAGAAATTCGTGAAGGAGAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24786058 49 - 73212453 TGTATTATGAGTATATCCTCTCCCATAATAATAGAAATTCATG---GAGAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48008562 52 - 81552678 TGTATTATGAGTATATCCTCTCCCATAATAATAGAAATTCATGAAGGAGAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53113643 52 + 80904711 TGTATTATGACTCTATCCTCTCCCATAATAATAGAAATTCATCAAGGAGACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52637889 52 + 80997621 TGTATTATGACTCTATCCTCTCCCATAATAATAGAAATTCATCAAGGAGACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47681301 52 + 74645514 TGTATTATGACTATATCCTCTCCTATAATAATAGAAATTCATCAAGGAGACA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9948554 52 - 75148670 CGTATTATGACTATATCCTCTCCCATAATAATAGAAATTCATCAAGGAGACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112821110 49 + 159171411 TGTATTATGACTATACCCTCTGCC---ATAATGGAGATTCATCAGGGAGAGA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39363154 0 - 61074082 C e mm10.chr11 99541976 421 + 122082543 I a score=454225.000000 s hg38.chr17_JH159146v1_alt 132859 145 + 278131 AGAAAATGATTACTAGGTAG--TTAAAAAGATGGCATTTCATGATCTGTGT-TCAGATAATGTAAATGTTCAGTGTCACGTACAAaagcgattttgga------tataatacagtttttctgcattctatagatgatgaaggaaaagtctacag s panTro4.chr17 66253380 145 - 82630442 AGAAAATGATTACTAGGTAG--TTAAAAAGATGGCATTTCATGATCTGTGT-TCAGATAATGTAAATGTTCAGTGTCACGTACAAaagcgattttgga------tataatacagtttttctgcattctatagatgatgaaggaaaagtctacag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24786107 145 - 73212453 AGAAAATGATTACTAGGTAG--TTAAAAAGATGGCATTTCATGATCTGTGT-TCAGATAATGTAAATGTTCagtgtcacatacaaaagtgattttgga------tataatacagtttttctgcattttatagatgatgaaggaaaagcctacag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48008614 145 - 81552678 AGAAAATGATTACTAGGTAG--TTGAAAAGATGGCATTTCATGATCCGTGT-TCAGATAATGTAAATGTTCagtgtcacatacaaaagtgattttgga------tataatacagtttttctgcattctatagatgatgaaggaaaagtctacag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53113695 145 + 80904711 AGAAAATGATTACTAGGTGG--TTAAAAAGATGGCATTTGACGATTTGTGT-TCAGATAATATAAATGTTCagtgtcaaatacaaaagcgattttgga------tgtaatacagtttttctgcattctgtagatgatgaaggaaaagcctaagg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52637941 145 + 80997621 AGCAAATGATTACTAGGTGG--TTAAAAAGATGGCATTTGACGATTTGTGT-TCAGATAATATAAATGTTCagtgtcaaatacaaaagcgattttgga------tgtaatacagtttttctgcattctatagatgatgaaggaaaagcctaagg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47681353 140 + 74645514 AGAAAATGATTACTAGGTGG--TTAAAAAGATGGCATTTGACGATTTGTGT-TCAGATAATATAAATGTTCAGTGTCAAATACAAAAGCG-----GGA------TGTAATACAGTTTTTCTGCATTCTATAGATGATGAAGGAAAAGCCTAAGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9948606 145 - 75148670 AGAAAATGATTACTAGGTGG--TTAAAAAGATGGCATTTGACGATTTGTGT-TCGGATAATATAAATGTTCagtgtcaaatacaaaagcgattttgga------tgtaatacagtttttctgcattctatagatgatgaaggaaaagcctaagg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112821159 141 + 159171411 AAAA----ATGACTAGGTGG--GTAAAAAGATGGCATTTCATGATCTGTGT-TCAGATAATATAAATGTTCagtgtcacatacaaaagcgattttgga------tataacacagtctttttgcattctatagatgacgaaggaaaagtccacag i calJac3.chr5 C 0 C 0 s mm10.chr11 99542397 143 + 122082543 AGAGAACGATTACTAGGTGAACTCAAATGGATGGTATTCAAT-ACCTGTTTGGTAAAGAATATAAATATGCAATGATACATGCAGAACAGATTTTAGAAGATATCATAATTCAATTTCCCT-CACACTGTAGACG---------AAGTCTATAG i mm10.chr11 I 421 C 0 e canFam3.chr9 39363154 0 - 61074082 C a score=5541250.000000 s hg38.chr17_JH159146v1_alt 133004 1446 + 278131 gcaagttactttattatagtcactcagtaatcaggggtagctctggggctgatgctgaggttttctgactttcagtccggtgctctcccctatgtatcactaactcTTAGAATTTTCCTTTCCCTTGGTTT-------CCTTCTGTAAAACAGCCCC--TTCTAGTAGAAAGATAAAGCAAACCATAGATCAGGAAGGTGGAGCACTAGGGCAACAGGACA-CAG-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACGCTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGCTGGCGAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTATTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCAGTCAGCCCGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGTACCGGGGAGACAAGCTGTTTCCACGGAGCAGCTTGAGGCAGGTGCACAACCGGAAGCCGTGCCACAGGACTCAGGAGAGCAGTGTGTGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGACTGGCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC---------CTCTCCTGAGAGTTTTATA-----ACCCCCC-AAAATGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCGTACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAATAGGGATAACTTTAGGTTACCAAAGCAGGACCCACACCATTTCCATGTGC----AAGAC-AAAACACTTATTTCAGAAAATCGTCATAGGAAGCATTGTGCTTTTGACAGAATAATAAAAGAAAGAGAAAATTTGGCCAATGAATAATTATAGATACAACTCATTACAAATCAGGAAAATAATATGTCCACAGATTTTGATTCTGTGGATTG---ATTGCTTGTGTCCCCTTTTAAAATTAGTATTACAGCTCACAAAATGACAATTATTTGTTTGTGCCACC----ACCATAAAAATGGTCAGTGTGATTAGTAATCTTT-CAATGCTTTTT-------------------------------------GTGATCTCAGAGCATGTGCTGAT--------------------------------AAAGACTGGAGGAGTGAGCTATATATTGGGTTTAAAGTGTG--------------TGTGTGTGTG--------------CAAACCATGTCTACCTGCGTACAAATGGAAAAGTCACTTTAC--ATAACTGATAGGAATAACTTGTTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTCCTGAAACTTGCCTTCT---------------CCACATTTCTCATTGC----------------------------------------------------------------------------TTATT--------------------------------------GTTAGATAAGTTATACT-----------ATTTTA- s panTro4.chr17 66253525 1461 - 82630442 gcaagttactttattatagtcactcagtaatcaggggtagctctggggctgatgctgaggttttctgactttcagtccggtgctctcccCTATGTATCATTAACTCTTAGAATTTTCCTTTCCCTTGGTTT-------CCTTCTGTAAAACAGCCCC--TTCTAGTAGAAAGATAAAGCAAACCATAGATCAGGAAGGTGGAGCACTAGGGCAACAGGACA-CAG-ACCTTTTGTTGGAGATCTTCAACGATGTTGAAGTAACGCTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCGAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTGGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCAACAAGCAGGGACTATTACGACTCCCCGTAAAGTAGCATGGCAGGAGGCAACCAGTCAGCCCGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCCACGGAACAGCTTGAGGCAGGTGCACAACCGGAAGCCGTGCCACAGGACTCAGGAGAGCAGTGTGTGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGACTGGCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC---------CTCTCCTGAGAGTTTTATA-----ACCCCCCCAAAATGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCGTACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAATAGGGATAACTTCAGGTTACCAAAGCAGGACCCACACCATTTCCATGTGC----AAGAC-AAAACACTTATTTCAGAAAATCGTCATAGGAAGCATTGTGCTTTTGACAGAATAATAAAAGAAAGAGAAAATTTGGCCAATGAATAATTATAGATACAACTCATTACAAATCAGGAAAATAATATGTCCACAGATTTTGATTCTGTGGATTG---ATTGTTTGTGTCGCCTTTTAAAATTAGTATTACAGCTCACAAAATGACAATTATTTGTTTGTGCCACC----ACCCTAAAAATGGTCAGTGTGATTAGTAATCTTT-CAATGCTTTTT-------------------------------------GTGATCTCAGAGCATGTGCTGAT--------------------------------AAAGACTGGAGGAGTGAGCTATATATTGGGTTTAAAgtgtg--------------tgtgtgtgtgtgtttgtgtgtgtgCAAACCATGTCTACCTGCATACAAATGGAAAAGTCTCTTTAC--ATAACTGATAGGAATAACTTGTTTTTCTGCAGGCAAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTCCTGAAACTTGCCTTCT---------------CCACATTTCTCATTTC----------------------------------------------------------------------------TTATT--------------------------------------GTTAGATAAGTTATACT-----------ATTTTA- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24786252 1454 - 73212453 gcaagttactttattatagtcactcagtaatcaggggtagctctggggctgatgctgaggttttctgactttcagtccggtgctctcccCTATGTATCATTAACTCTTAGAATTCTCCTTTCCATTGGTTT-------CCTTCTGTAAAACAGCCCC--TCCTAGTAGAAAGATAAAGCAAACCATAGATAGGGAAGGTGGAGCACTAGGGCAACAGGACA-CAG-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAATGCTGATAATCCGGGCACACCATTGGGGTATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCGAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTATTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCAGTCAGCCCACGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCCATGGAACAGCTTGAGGCAGGTGCACAACCGGAAGCCGTGGTACAGGACTCAGGAGAGCAGTGCGTGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGACTGGCTGCAAAA---CTTGGG--TTGCCTTGACTCCAAAACTCTC---------CTCTCCTGAGAGTTTTATA-----ACCCCCC-AAAATGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTTGTACAAACATCTCATTAGAGTTGTTTATTTACTGAAGAAGAGTTTTATGCCTCATAAAAGAGGGATAACTTTAGGTTACCAAAGCAGGACCCACCCCATTTCCATGTGC----AAGAC-AAAACACTTATTTCAGAAAATCGTCATAGGAAGCTTTGTCCTTTTGAAAGAATAAGAAAAGAAAGAGAAAATTTGGCCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAAATACTGTGTCCACAGATTTTGATTCTGTGGATTG---ATTGCTTGTGTCCCCTTTTAAAATTAGTATTACAGCTCATAAAATGACAATTATTTGTTTGTGCCACC----ACCATAAAAATGGTCAGTGTGATTAGCAATCTTT-CAATGCTTTTT-------------------------------------GTGATCTCAGAGCATGTGCTGAT--------------------------------AAAGACTGGAGGAGTGAGCTATATATTGGGTTTAAAgtgtg--------------tgtgtgtgtg------tgtgtgtACAAACCATGTCTACTTGCGTACAAATGGAAAAGTCACTTTAC--ATAACTGATAAGAATAACTTGTTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTCCTGAAACTTGCCTTCT---------------CCACATTTCTCATTTC----------------------------------------------------------------------------TTATT--------------------------------------GTTAGATAAGTTATACT-----------ATTTTA- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48008759 1446 - 81552678 gcaagttactttattatagtcactcagtaatcaggggtagctctgggcctgatgccgaggttttctgactttcagtccagtgctctcccCTATGTATCATTAACTCTTAGAATTCTCCTTTCCCTTGGTTT-------CCTTCTGTAAAACAGCCCC--TTCTAGTAGAAAGATAAAGCAAACCATAGATCGGGAAGGTGGAGCACTAGGGCAACAGGACA-CAG-ACCTTCTGTTGGAGATCTTCAATGGTGTTGAAGTAACGCTGATAATTGGGGCACACCATTGGGATATCCTGTTCACATTGTGCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCGAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAAGACCCCATCCTCACACCAGGCACAGTTCCCCACCGAGCAGCAACTATTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCGGTCAGCCCGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATTGGGATGTAGCACAGGCACCGGGGAGACAGGCTGTTTCCATGGAACAGCTTGAGGCAGGTGCACAACCGGAAGCCGTGGTACAGGACTCAGTAGAGCAGTGCGTGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGGCAGAGACTGGCTGCAAAA---CTTCAG--TTTCCTTGACTCCAAAACTCTC------CTTCTCTCCTGAGAGTTTTATA-----ACCCCCC-AAAATGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCGTACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAGGAGGGATAACTTTAGGTTACCAAAGCAGGACCCACACCATTTCCATGTGC----AAGAC-GAAACACTTATTTCAGAAAATCGTCATAGGAAGCATTGTCCTTTTGACAGAATAAGAAAAGAAAGAGAAAATTTGGCCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAAATGATATGTCCACAGATTTTGATTCTGTGGATTG---ATTGCTTGTGTCCCCTTTTAAAATTGGTATTACAGCTCATAAAATGACAATTATTTGTTTGTGCCACC----ACCATAAAAATGGTCATTGTGATTAGCAATCTTT-CAGTGCTTTTT-------------------------------------GTGATCTCAGAGCATGTGCTGAC---------------------------------AAGACTGGAGGAGTGAGCTATATATTGGGTTTAAAGTGTG--------------TGTGTGTA----------------CAAACCATGTCTATCTGTGTACAAATGGAAAAGTCACTTTAC--ATAACTGATAGGAATAACTTGGTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTCCTGAAACTTGCCTTCT---------------CCACATTTCTCACTTC----------------------------------------------------------------------------TTATT--------------------------------------GCTAGATAAGTTATACT-----------ATTTTA- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53113840 1569 + 80904711 gcgagttactttattatagtcactcagttatcaggggtagttctggcgctggtgctgaggttttctgactttcagtccagtggtctcccCTATGTACCATTAACTCCTGGAATTCCCCTTTCCCTTGGTTG-------CCTTCTGTAAAACCGTCCC---TCTGGTAGAAAGATAAAGCAAGTCATAGATCCGGAAGGTGGAGCACTAGGGCAACAGGACA-CAC-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACACTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCAAGTCTGTCATTTAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTGTTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCGGTCAGCCCGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCTATGCAACAGCTTGAGGCAGGTGCACAACCGGAGGCCGTGGTACAGGATTCAGGAGAGCAGTGCGTCGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACGGAGGCTGTCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC------CTTGCCTCCTGAGAGTTTTATA-----ACACCCC-AAAATGGGTGTTTACAGACTGCACTGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCATACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAAGAGGGATAACTTTAGGTTACCGAAGCAGGACCTACACCATTTCCATGTGC----CAGAC-AAAACACTTATTTCAGAAAATTGTCATAGGAAACATTGTCCTTTTGACAGAATAAGAAAAGAAAGAGAAAATTTGGCCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAAATAACATGTCCACAGATTTTGATTCTGTGCATTG---ATTGCTTGGGTCCCCTTTTAAAATTAGTATTACAGCTCATAAAATGACATTTATTTGTTTGTGCCACC----ACCATAAAAATGGTCAGTGTGATTAGCAATCTTT-CAATGCTTTTT-------------------------------------GTGTTCTCAGAGTATGTGCTGACAAGACTGGAGGAGTGAGCTATATATTGGGCTTAAAGACTGGAGGAGTGAGCTATATATTGGACTTAAtgtgtg--------------tgtgtgtgtttgtgtgtgtgtATACAAA-CATGTCTACCTGCGTACAAATGGAAAAGTCACTTTAC--GTAACTGATAGGAATAACTTGTTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTTCTGAAACTTGCCTTTT---------------CCCCATTTCTCATTTCTTGTTGTTAGATAAGTTGTACTATTTTACCTGATCTTTGATTTTCTGAAACTTGCCTTCTCCCCATTTCTCATTTCTTGTT--------------------------------------ATTAGATAAGTTATACT-----------ATTTTA- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52638086 1460 + 80997621 gcgagttactttattatagtcactcagttatcaggggtagttctggcgctggtgctgaggttttctgactttcagtccagtggtctcccctatgtaccattaactccTGGAATTCCCCTTTCCCTTGGTTG-------CCTTCTGTAAAACCGTCCC---TCTGGTAGAAAGATAAAGCAAGTCATAGATCCGGAAGGTGGAGCACTAGGGCAACAGGACA-CAC-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACACTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCAAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTGTTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCGGTCAGCCCGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCTATGCAACAGCTTGAGGCAGGTGCACAACCGGAGGCCGTGGTACAGGATTCAGGAGAGCAGTGTGTGGAGGAACAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGGCTGGCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC------CTTCCCTCCTGAGAGTTTTATA-----ACGTCCC-AAAATGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCATACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAAGAGGGATAACTTTAGGTTACCGAAGCAGGACCTACACCATTTCCATGTGC----CAGAC-AAAACACTTATTTCAGAAAATTGTCATAGGAAACATTGTCCTTTTGACAGAATAAGAAAAGAAAGAGAAAATTTGGCCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAAATAACATGTCCACAGATTTTGATTCTGTGCATTG---ATTGCTTGGGTCCCCTTTTAAAATTAGTATTACAGCTCATAAAATGACATTTATTTGTTTGTGCCACC----ACCATAAAAATGGTCAGTGTGATTAGCAATCTTT-CAATGCTTTTT-------------------------------------GTGTTCTCAGAGTATGTGCTGAC---------------------------------AAGACTGGAGGAGTGAGCTATATATTGGACTTAAtgtgtg--------------tgtgtgtgtttgtgtgtgtgtATACAAA-CATGTCTACCTGCGTACAAATGGAAAAGTCACTTTAC--GTAACTGATAGGAATAACTTGTTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTTCTGAAACTTGCCTTCT---------------CCCCATTTCTCATTTC----------------------------------------------------------------------------TTGTT--------------------------------------ATTAGATAAGTTATACT-----------ATTTTA- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47681493 1461 + 74645514 GCGAGTTACTTTATTATAGTCACTCAGTTATCAGGGGTAGTTCTGGCGCTGGTGCTGAGGTTTTCTGACTTTCAGTCCAGTGGTCTCCCCTATGTACCATTAACTCCTGGAATTCCCCTTTCCCTTGGTTG-------CCTTCTGTAAAACAGTCCC--TTCTGGTAGAAAGATAAAGCAAGTCATAGATCCGGAAGGTGGAGCACTAGGGCAACAGGACA-CAC-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACACTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCGTTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCAAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTGTTACAATTCCCAGTAAAGTAGCATGGCAGGAGGCAACCGGTCAGCCCACGAGACCTGGATAGGAAGCTTGGAGTCTGACATCGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCTATGGAACAGCTTGAGGCAGGTGCACAACCGGAGGCCGTGGTACAGGATTCAGGAGAGCAGTGCGTGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGGCTGGCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC------CTTCCCTCCTGAGAGTTTTATA-----ACGCCCC-AAAATGGGTGTTTACAGACTGCACTGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCATACAAACATCTCATTAGAGTTGTTTATTTTCTGAGGAAGAGTTTTATGCCTCATAAAAGAGGGATAACTTTAGGTTACTGAAGCAGGACCTACACCATTTCCATGTGC----CAGAC-AAAACACTTATTTCAGAAAATTGTCAAAGGAAACATTGTCCTTTTgacagaataagaaaagaaagagaaaatttggcCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAAATAACATGTCCACAGATTTTGATTCTGTGCATTG---ATGGCTTGGGTCcccttttaaaattagtattacagctcataaaatgacatttatttgtttgtgcCACC----ACCATAAAAATGGTCAGTGTGATTAGCAATCTTT-CAATGCTTTTT-------------------------------------GTGTTCTCAGAGTATGTGCTGAC---------------------------------AAGACTGGAGGAGTGAGCTATATATTGGGCttaatgtgtg--------------cgtgtgtgtttgtgtgtgtgtatacaaa-catGTCTGCCTTCGTACAAATGGAAAAGTCACTTTAC--ATAACTGATAGGAATAACTTGTTTTTCTGCAGGCTAAAATGTAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTTCTGAAACTTGCCTTCT---------------CCccatttctcatttc----------------------------------------------------------------------------ttgtt--------------------------------------GTTAGATAAGTTATACT-----------ATTTTA- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9948751 1455 - 75148670 gcaagttactttattatagtcactcagttatcaggggtagttctggggctggtgctgaggttttctgactttcagtccagtggtctcccctatgtaccattaactccTGGAATTCCCCTTTCCCTTGGTTG-------CCTTCTGTAAAACAGTCCC--TTCTGGTAGAAAGATAAAGCAAGTCATAGATCTGGAAGGTGGAGCACTAGGGCAACAGGACA-CAC-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACACTGATAATCCGGGCACACCATTGGGATATCCTGTTCACATTGTTCTTGGATCCTGGATTCCAGCTCTGCATTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCAAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACCCCATCCTCACACCAGGCACAGTTCCCCACAAAGCAGGGACTGTTACAATTCCCAGTAAAGTAGCATGGCAGGAGGCAACCAGTCAGCCTGCGAGACCTGGATAGGAAGCTTGGAGTCTGACATTGGGATGTAGCACAGGCACCGGGGAGACAAGCTGTTTCTATGGAACAGCTTGAGGCAGGTGCACAACCGGAGGCCGTGGTACAGGATTCAGGAGAGCAGTGCATGGAGGAGCAGTCAGAAGTCATCCTTCCAGAAGCAAAGACAGAGGCTGGCTGCAAAA---CTTCAG--TTGCCTTGACTCCAAAACTCTC------CTTCCCTCCTGAGAGTTTTATA-----ATGCCCC-AAAACGGGTGTTTACAGACTGCACCGGATGTTTTCTTTATCACTGATGGTGCCAGTTTTCATACAAACATCTCATTAGAGTTGTTTATTTACTGAGGAAGAGTTTTATGCCTCATAAAAGAGAGATAACTTTAGGTTACCGAAGCAGGACCCACACCATTTCCATGTGC----CAGAC-AAAACACTTATTTCAGAAAATTGTCATAGGAAACATTGGCCTTTTGACAGAATAAGAAAAGAAAGAGAAAATTTGGCCAATCAATATTTATAGATACAACTCATTACAAATCAGGAAAATAATATGTCCACAGATTTTGATTCTGTGCATTG---ATTGCTTGGGTCTCCTTTTAAAATTAGTATTGCAGCTCATAAAATGACATTTATTTGTTTGCGCCACC----ACCATAAAAATGGTCAGTGTGATTAGCAATCTTT-CAATGCTTTTT-------------------------------------GTGTTCTCAGAGTATGTGCTGAC---------------------------------AAGACTGGAGGAGTGAGCTATATATTGGGCTTAAtgtgtg--------------cgtgtgtgtttgtgtgtgtgtgtACAAACCGTGTCTACCTGCGTACAAATGGAAAAGTCACTTCAC---------ATAGGAATAACTTGTTTTTCTGCAGGCTAAAATATAAATTGGTT----AGAGCTGGAATTATGATCTTTGATTTTCTGAAACTTGCCTTTT---------------CCCCATTTCTCATTTC----------------------------------------------------------------------------TTGTT--------------------------------------GTTAGATAAGTTATACT-----------ATTTTA- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112821300 1453 + 159171411 acaagttactttgttatagttactcagtaatcaggggtagctttaggggtgggactgaggtttcccgacttccagcacagtgctcttccctatgtaccaTTAACTTGTAGAACTCTCCTTTCTCTTGGTTT-------CCTTCTGTAAAACAGCACC--TTCTAGTAGAAAGATAAAGTAAACCATAGATAGAGAAGCTGGAGCACTAGGGCAACAGGACA-TGC-ACCTTTTGTTGGAGATCTTCAATGGTGTTGAAGTAACACTGACAATCGGGACATGCCAGTGGGATATCCTGTTCACATTGCTCTTGGATCCTGGATTCCAGCTCTGCATTGGTCTCCTCCAGGCTGCGCACCTTCTCCAGATAGTTGGCGAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTAGTGAACACTCCATCCTCACACCAGGCACAGTTCCCCACCAAGCAGGGACTACTACAACTCCCAGTAAAGTAGCATGGCAGGAGGCAACCGGTCAGCCCGAGAGACCTGGAAAGGGAGCTAGGGGTCTGACATCGGGATGCAGCACAGGAACCGGGGAGACAAGCTGTCTCCATGGAACAGCTTGAGGCAGGTGCACAACAGGAAGCCCTGGTACAGGACTCAGGAGAGCAGAGCGTGGAGGAGCAGTCAGAAGACATCCTTCTAGAAGCAAAGACAGAGACTGGCTGCAAAA---CACCAG--TTGCCTTGACTCCAAAACACTC------CTTCCCTCCTGAGAGTTTTATATAGCCCCCCCTC-AAAATGGGTGTTTACAGACTGCACCGGATGTTTTCGTCATCATTGATGGTGCCGGTTTTTATACAAACATCTCATTAGAGTTGTTTATTTACTGAAGAAGAGTTGTATGCCTCATAAAAGGGGGATAACTTTAGGTTACCAAAGCAGGGCCCACACCATTTCCATGTGC----AAGAC-AAAACACTTATTTCAGAAAATCATCATAGGAAGCATTGTCTTTTTGACAGAATAAGAAAAGAAAGAGAACATTTGGCCAATCAATAATTATAGATACAACTCATTACAAATCAGGAAATTAATATTCCCACAGATTTTGATTCTGTGCATTG---ATTGCTTGTGTCTTC-TTTAAAATTAGTATTACGGCTCATAAAAGGACATTCATTTGTTTGT-CCACC----ACTATAAAAATGGTCAGTGTGGTTAGCAATCTTC-CAGTGCTTTTT-------------------------------------GTGATCTTAGAGCATGTGCTGAC---------------------------------AGGACTGGAGAAGTGAGGTATATACTGGGTTTAAAGAGTG--------------TGAGTGTGTG----TGTGTGTGTACAAACCATGTCTACCTGCATACAAATGGAAAAGTCTCTTTAC--ACAACTGATAGGAATAACTTG-TTTCCTGTAAGTTAAAATATATATTGGTT----AGAGCTGGAATTATGATCTTTGACTTCCTGAAACTTGCCTTCT---------------CCACACTTC-----------------------------------------------------------------------------------TTATT--------------------------------------TTTAGATAAGTCATACA-----------ATTTTA- i calJac3.chr5 C 0 C 0 s mm10.chr11 99542540 1458 + 122082543 CAAGGTGACATTTCTATAGTCACCCAATAATTCG--------CAGAGAATGAGACTGA--TTATTTGAC------------------------------CTAGCTCTGGGAATCCCTCTTTCCTTTGTTTT-------ACATCCACAAAGCAACCTG--CCCCAGTATAGCTATGAGAGAAATCAGAAATGGGAAA-------CATTAAGGCAGTGAGACA-CCCAACCTTTTGTTGGAGTTCTTCAATGGTGTCGAAGTACCGCTGATAATCGGGGCAGACCAGAGGGGCATTGGGCTCGCATTGCTCTCGGATCCTGCACTCCAGCTCTGCGTTGTTCTCTTCCAGGCTTCTCACCCTCTCCAGATAGCTGGCCAGGCGGTCATTCAGGAACTGCATGGTCTCCTTCTCATTACTGTTGAACGATCCTTCCTCACACCATGCACAGCTCCCCACCAGGCAAGGACTGTTACAGCCACCAGCCAAGTAGCACGGTGAGAGGCAACAGGCTGGGAGGGAAGCCCTGCAGAGGAAGCTTGGGGTTTGACATCTGGATGTGGAACAGGTGTTGGGGAGGCAAGTTGTGTTGGTGGGGCAGAATGAGGCAGTTGCGCAGCCGGAAGCCCCTGCACAGGGCTCAGAAGAGCAGCAGCTAGGGGAGCCATCGGAAGCCATCTTCTGAGAAGGAAC-----AGACAGGATGTAGTATTGCTTCGGTCTCGCCTAGTCTCCAAAGGTCTAGGACTTTTGGCCTCCTGAGACTTTTATA-----TCTCCCTTCAAATGGGTATTTACAGGACACACC-GATGTTTTCTCTAGTGCTACAGGTGCCAGTTTTCCTACAAACATCTCATTAGTGTTGATTATTTATGGAGGA--AGTTTTATGCCTCGTAAAAGGAGGATAACTTCAGGTTACTAAATCAGGACTAACGCCATTTCCACATGCTGCTTGGATAAAAATTCTTATTTCAGCAAATGGTCATAGTAAGCATTATCCTTTTGAACGAATAAGGAACCAAAGAGAAAAATCGAGCCATCAGTAATTATAGGTAGAGGTCATTAGAAATATTAAAA--------CCCATAGGGTTTTATTTTGAAAATTG---ATTGCTCTGGTCTACCTAACAAACGGACATCACAGCTTATTAAATTGCATGTATTTGTTTGTGCTACCAACTACTGTGGAAATGGTCATTGTGGTTAACAATCTTG-AAGTGGTTTttaaattaaattaaattaaattaaattaaatttaattTAGTGAGCTTGAAGCATATGCTTGC---------------------------------ATGGCATAGGAA--AAGGTTTATGCTGAATGTGAAGTGTG--------------TGCATT-----------------------CATTTTTA---------------------------------GACTGATGAGAATAATT-----------GAGCCAAAATATGAACTGGTTATCAAGATCT-GAATTGTGATCTTTGGTcatccagaatttgcggtctgtagccaagcactaaccatgcctcaccctgc----------------------------------------------------------------------------ttagttggtgagattggatgTGTATGCTCTGAGTGGATAGTCAGATACATAAGCTTTGCTTTCTCATTTACATTTTA- i mm10.chr11 C 0 I 103 s canFam3.chr9 39363154 1468 - 61074082 GTGAGTGAGTTTATTTTGGCCATTCAATGATTACTGGCAGCCCCACGGCTCATGCTAATTTTTGCTGAATTTCAGCCCACCACCCTTTC--------------CTCCTGGAGAACCCCTTTCCCTGGGGATGGGGGGAACTTCCATAGAACAGCCTTTTTTTTAGTATAAAGATAAAGCAAATCACAGATTGGGAGGGTGAAGCATTAGGGCAATGAAACACCAG-ACCTTTTGCTGAAGCTCTTCAATAGTGTCAAAGTAACACTGATAATCAGGGCACACCAGTGGGATATCCTCTTCACATTGTTCTCGAATCCTGCATTCGAGCTCTGCGTTCATCTCTTCCAGGCCACGGACCTTCTCTAGATAGTTGGCAAGTCTGTCATTCAGGAACTGCATCGTCTCCTTCTCATTGCTGTTGAACACCCCATCCTCACACCAAGCACAGTTCCCCACCAAGCAAGGAATATTATAATTCCCAGCAAAGTAGCATGGTGTGAGGCAACTAGTTGGCAAGCGAGACCTGGATAGGAAGCTAGGGGTCTGGCATCTGGATGTAGCAGGGGCACTGGGGAGGCAGGTGGCCTCCATGGAACAGGTTGAAGCAAGTGCACAGTCGGAAGCCTGGGCACAGGATTCAGAAGAGCAGCACGTGGGGAAACAGTCAGAAGTCATCCTATTAGAAGTGAAGAACAAGACTAGTTGCAAAA---CTCCAA--TTGACT-GGTTCCCAGAGTCTC------CATCCCTCCTGAGACTTTTATA-----CAGCCTG-CAAATGGGTATTTACAGAACATACCGGATGTTCTGTTTATCACTGTTGGTGCCAGTTTTCATATGAACAT-TCATTAGTGTTGTTTGTTTTCTGAGGA--AGTTTTATGCCTCATAAAAGAGGCATAGCTTCAGGTTACTAAGTAAGGG----CAATATTTCCATCTGCCAGTAGGAT-AAGACGCTTGGTTCAGAGAATCTTCATGAGATGCATTATCTTTTTGGTAGAATACAGAAAGGCAGAGGACATTTGG-CACTCAGTAATTGCAGATACAACTGATTACAAATAACAAAAATGATATTATCACAGATTTTGCTCCTGT--ATTGTAAATTGTTTATCTATCCTTTTAAAATTCATATTACATCTCATTAAATGCCATTTATTTGTTTGTG-TACC----ATCAT-AAAATGTTCCATGTAGTTAACCATCTTTGCAATGCTTTTT-------------------------------------ATGGTCTTGT----TGTGCTCAC---------------------------------ATGG-TAGAGGAGTGAGGTGTGTACTGGGTTTAAAgtgtgtgtgcacatgcatatgtgtgtgtgtgtgtgtgtgtgtatgAACTACATCTACCTGTGTGCAAATTGAAAAGTCACTTTATAAATAACTGATGGGCATAATCTG-TGGCCTGCAGGCCAAAATACAAACTGGTTATCAAGATCTGGAGTTGTGATCTTTGATTTCCTGAAACTTGCTTTCT---------------CTATGTTACCTATGCC----------------------------------------------------------------------------TCATT--------------------------------------TTTAGATTATGTATACT-----------ATTTTCA i canFam3.chr9 C 0 C 0 a score=284440.000000 s hg38.chr17_JH159146v1_alt 134450 85 + 278131 CCTGTATTCCTA------------------ATAAGA--------GTGAAATATAAA--TTCTA----------------------------------------------------------------AGTTATAACCTTTTAGTCCCTTGGGAA-----TTCCTTAATGATTATACTTCAGA s panTro4.chr17 66254986 85 - 82630442 CCTGTATTCCTA------------------ATAAGA--------GTGAAATATAAA--TTCTA----------------------------------------------------------------AGTTATAACCTTTTACTCCCTTGGGAA-----TTCCTTAATGATTATACTTCAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24787706 85 - 73212453 CCTGTATTCCTA------------------ATAAGA--------GTGAAATATAAA--TTCTA----------------------------------------------------------------AGTTATAACCTTTTAGTCCCTTGGGAA-----TTCCTTAATGATTATACTTCAGA i ponAbe2.chr17 C 0 M 522 s nomLeu3.chr19 48010205 85 - 81552678 CCTGTATTTCTA------------------ATAAGA--------GTGAAATATAAA--TTCTT----------------------------------------------------------------AGTTATAACCTTTTATTCCCTTGGGAA-----TTCCTTAATGATTATACTTCAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53115409 85 + 80904711 CGTGTATTTCTA------------------ATGAGA--------GTGAAATATAAA--TTGTA----------------------------------------------------------------AGTTATAACCTTTTAGTCCCTTGGGAA-----TTCCTCAATGATTATACTTCAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52639546 85 + 80997621 CGTGTATTTCTA------------------ATGAGA--------GTGAAATATAAA--TTGTA----------------------------------------------------------------AGTTATAACCTTTTAGTCCCTTGGGAA-----TTCCTCAATGATTATACTTCAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47682954 84 + 74645514 CCTGTATTTCTA------------------ATGAGA--------GTGAAATATAAA--TTGTA----------------------------------------------------------------AGTTATAACCTTTTAGT-CCTTGGGAA-----TTCCTCAATGATTATACTTCAGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9950206 84 - 75148670 CCTGTATTTCTA------------------ATGACA--------GTGGAATATAAA--TTGTA----------------------------------------------------------------AGTTATAACCTTTTAGT-CCTTGGGAA-----TTCCTCAATGATTATACTTCAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112822753 87 + 159171411 CCTGTATTCCTA------------------ATAAGA--------GTGAAATATAAATTTTCTA----------------------------------------------------------------AGTTATAATCTTTTAGTCCCTTGGGAA-----TTCCTCAGTGATTATACTTCAGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99544101 174 + 122082543 cctgccttcctgcACAGTTGAAGATCAATCATAAGATATTGTTCATGGTACATAAA--TGATGTACCCCAACCTACAATCCCTGTCCTTACCTATATTAAGGAGAGCAGAGAGAGAAATGGGGGTGTGGCTGTAATGTTTCAGTCCCTTGAGAA------ACCTCACCCATTATACTTCGGA i mm10.chr11 I 103 C 0 s canFam3.chr9 39364622 90 - 61074082 CCTGTATTAATA------------------ATAAGA--------GTGAAATACAAT--TTCTA----------------------------------------------------------------AGTTACAATCTTTTAGTTTCTTGGGAAACTAAACCCTCATTGGATACAGTTCAGA i canFam3.chr9 C 0 C 0 a score=804606.000000 s hg38.chr17_JH159146v1_alt 134535 298 + 278131 GTAGGGGCAAGGAACCCACAGGAATCTTTTCTTCTGAGATGTAGAGCCTGTTTTCTCCTATTTATTTA-TTTATGAAGGCCTGAATTTCATGAAAATTGAAAATACTGGAACTTGGAAAATAAAATTCT---ATTTAGGTTCCAAATCAGTAATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAC--AGGAACTTGAGATACGTAATTTTTTTGAATTATCTCT-TGGATTTCACCTCCAT----TGTGAAGGATAATCTATTTCACTTTGCTTGGTTTTAGTCGTTACATTTATTTCATTT s panTro4.chr17 66255071 298 - 82630442 GTAGGGGCAAGGAACCCACAGGAATCTTTTCTTCTGAGATGTAGAGCCTGTTTTATCCTATTTATTTA-TTTATGAAGGCCTGAATTTCATGAAAATTAAAAATACTGGAACTTGGAAAATAAAATTCT---ATTTAGGTTCCAAATCAGTAATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAC--AGGAACTTGAGATACGTAATTTTTTTGAATTATCTCT-TGGATTTCACCTCCAT----TGTGAAGGATAATCTATTTCACTTTGCTTGGTTTTAGTCGTTACATTTATTTCATTT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48010290 296 - 81552678 GTGGGGGCAAGGAACCCACAGGAGTCTTTTCTTCTGCGATGTAGAGCCTGTTTTCTCCTATTTATTTA-TTTATGAAGGTCTGAATTTCATGAAAATTAAAAATACTGGAACTTGGAAA--AAAATTCT---ATTTAGGTTCCAAATCAGTAATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAC--AGGAACTTGAGATGTGTAACTTTTTTGAATTCTCTCT-TGGATTTCACTTCCAT----TATGAAGCATAATCTATTTCACTTTGCTTGGTTTTAGTTGTTACATGTATCTCATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53115494 298 + 80904711 GTAGGGACAAGGAACCCACAGGAGTCTTTTCTTCTGAGATGTACAGCCTGTTTTCTCCTGTTTATTTA-TTTATGAAGGCCTGAATTTCATGAAAATTAAAAATGCTGGAACTTGGGAAATAAAATTTT---ATTTAGGTTCCAAATCAGTTATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAT--AGGAACTTGAGATGTGTAACTTTTTTGGATTCTGTCT-TGGATTTCAGCTCCAT----TATGAAGCATAATCTGTTTCACTTTGCTTGGTTTTAGTCGTTATGTTTATTTCATTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52639631 298 + 80997621 GTAGGGACAAGGAACCCACAGGAGTCTTTTCTTCTGAGATGTACAGCCTGTTTTCTCCTATTTATTTA-TTTATGAAGGCCTGAATTTCATGAAAATTAAAAATGCTGGAACTTGCAAAATAAAATTTT---ATTTAGGTTCCAAATCAGTGATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAT--AGGAACTTGAGATGTGTAACTTTTTTGGATTCTGTCT-TGGATTTCAGCTCCAT----TATGAAGCATAATCTGTTTCACTTTGCTTGGTTTTAGTCGTTATGTTTATTTCATTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47683038 298 + 74645514 GTAGGGACAAGGAACCCACAGGAGTCTTTTCTTCTGAGATATACAGCCTGTTTCCtcctatttatcta-tttatgaaGGCCTgaatttcatgaaaattaaaaatgctggaacttgcaaaataaaatttt---atttaggttCCAAATCAGTGATTCCACTAGAT-GAAATCTCTGGTGCCAAATCTGACAGAT--AGGAACTTGAGATGTGTAACTTTTTTGGATTCTGTCT-TGGATTTCAGCTCCAT----TTTGAAGCATAATCTATTTCACTTTGCTTGGTTTTAGTCgttatgtttatttcattt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9950290 298 - 75148670 GTAGGGACAAGGAACCCACAGGAGTCTTTTCTTCTGAGATGTAGAGCCTGTTTTCTCCTATTTATTTA-TTTATGAAGGCCTGGATTTCATGAAAATTAAAAATGCTGGAACTTGCAAAATAAAATTTT---ATTTAGGTTCCAAATCAGTTATTCCACTGGAT-GAAATCTCTGGTGCCAAATCTGACAGAT--AGGAACTTGAGATGTGTAACTTTTTTGGATTCTGTCT-TGGATTTCAGCTCCAT----TATGAAGCATAATCTGTTTCACTTTGCTTGGTTTTAGTCGTTCTGTTTATTTCATTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112822840 244 + 159171411 -AAAGAGGGAGGAACCCACAGGAGTCTTTGCTTCTGAGATGTA------------------------------------------------------TAAACATACTGGAACTTGGGAAATAAAATTCT---ATTCAGGTTCCAAATGACTAATTCCACTGGTT-GAAATCTCTGATGCCAAATCTGACAGAT--AGGAGCTTGAGATGTGTGACTTTTTTGGATTCTCTCT-TGAATTTCACCTCCGT----TATGAAGTACAATCTATTTCACTTTGCTTAGCGTTAGTCATGACATGTATTTCATTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99544275 294 + 122082543 GTAGAGCCAAGGAAGCTGCAAAAATCTTACTTTTGGTTATATGGAGTCTGTATCCTC----TTGTTTA-TTTAGGAAAGTCTCAATTTCATGAAAATTAAAAGTATTGGGACCTGGGGAATATGATTCTGTGATGTCTGTTTC-AACCAACAGTCCCTCTGAGTAAAAACCTCTGGTACAGCACTAGATAGATGAATGAGCATTTGAGACAGAACTTCTTTGTATTGGTTCTAGGGATTTCACCTCTAC----TGTAAACTGGAA----TTTCATGTTGTCTGACTTT--TCATAGTTTTTATTTCACTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39364712 300 - 61074082 ATAGGGGCAAGGAAGCTATAAAAGACTTTTCTTCTGAGA--TAGAATCTGTTTTCTCTTATTTACTTATTTTTTTAAGGTCACAATTTCATAAAAATGTGAAATACTGGCG-TTGGGGAATAAAATTTTATAATTTGAGTTCCAGACCAGGAGTTCCATTGGAT-GAAATCCCTGGTGCAGTACCAAATGGAT--AGCGATTTGAGA--CATAACTTTTTTGGATTTTGTTT-TGAATTTCATCTCTATTATGTATGTAGCATAATCTCTTTCACTTTCCTTGGCA-TAATTGTGGTATGTATTTCATTT i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24787791 522 - 73212453 M a score=172975.000000 s hg38.chr17_JH159146v1_alt 134833 43 + 278131 TCAAAGGTGCATA-GAGAAAATTGTCTCTAGAATTTTTAAGAAC s panTro4.chr17 66255369 43 - 82630442 TCAAAGGTGCATA-GAGAAAATTGTCTCTAGAATTTTTAAGAAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24788313 44 - 73212453 TCAAAGGTGCATATTAGAAAATTGTCTCTAGAATTTTTAAGAAC i ponAbe2.chr17 M 522 C 0 s nomLeu3.chr19 48010586 43 - 81552678 TCAAAGGTGCATA-GAGAAAATTGCCTCTAGAATTTTTAAGAAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53115792 43 + 80904711 TCAAAGGTGCATA-GAGAAAATTGCCTGTAGAATTTTTAAGAAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52639929 43 + 80997621 TCAAAGGTGCATA-GAGAAAATTGCCTGTAGAATTTTTGAGAAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47683336 43 + 74645514 tcaaaggtGCATA-GAGAAAATTGCCTGTAGAATTTTTAAGAAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9950588 43 - 75148670 TCAAAGGTGCATA-GAGAAAATTGCCTGTAGAATTTTTAAGAAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112823084 43 + 159171411 TCAAAGGTGCACA-GAGAAAATTGCCTCTAGAATTTTTAAGAAC i calJac3.chr5 C 0 C 0 s mm10.chr11 99544569 43 + 122082543 TCAAAATTACACA-GAGAAAATTGCTTTCAGCATCAATAAGAGC i mm10.chr11 C 0 I 5381 s canFam3.chr9 39365012 43 - 61074082 TCAAAGGTGGGCA-GAACAGATTGCCTCTAGAATCTTTAAGATT i canFam3.chr9 C 0 C 0 a score=735037.000000 s hg38.chr17_JH159146v1_alt 134876 242 + 278131 ATTATAGGAAA--AAAACAGATTAATCTGAAAAAGTTAAAAAATTTTTGATCCAGAATAAACTTA-TTTTTTCTCCTAATCTTGAGTGCTACTTCCTAGGTACCTGATAGTAGA--AACCAAA--CCAAACCAAACCAGAAGAACATATGTAAGTGAGTTAAAATAGTCTCTTAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------CTGGGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG s panTro4.chr17 66255412 242 - 82630442 ATTATAGGAAA--AAAACACATTAATCTGAAAAAGTTAAAAAATTTTTGATCCAGAATAAACTTA-TTTTTTCTCCTAATCTTGAGTGCTACTTCCTAGGTACCTGATAGTAGa--aaccaaa--ccaaaccaaaccaGAAGAACATATGTAAGTGAGTTAAAATAGTCTCTTAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------CTGGGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24788357 241 - 73212453 ATTATAGGAAA--AAAACACATTAATCTGAAAAAG-TAAAAAAATTTTGATCCAGAATAAACTTA-TTTTTTCTCCTAATCTTGAGTGCTACTTCCTAGGTAGCTGATAATAGa--aaccaaa--ccaaaccaaaccaGAAGAACATATATAAGTGAGTTAAAATAGTCTCTTAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGGGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48010629 241 - 81552678 ATTACAGGAAA--AAAACACATTAATCTGAAAAAGTTAAAAATTTTTTTATCCAGAATAAACTTA--TTTTTCCCCTATTCTTGAGTGCTACTTCCTAGGTAGCTGATAATAGA--AACCAAA--CCGAACCAAACCAGAAGAACATATGTAAGTGAGTTAAAATAGTCTCTTAGGATTTGTTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGGGTTTGAATTTAGTGATTCTCTTCACACATCAACACTT-ATGCAAAAAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53115835 233 + 80904711 ATCATAGGAAAAGAAAACACAGTAATCTGAAAAAGTTAAAAATTTTTTGATCCAGAATAAACTTA-TTTTTTCCCCTAATCCTGAGGGCTACTTCCTAGGTAGCTGATAATAGA--------------AACCAAACCAGAAGAACATATGTAAGTGAGTTAAAATAGTCTCTGAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGGGTTT-AATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52639972 234 + 80997621 ATTATAGGAAAAGAAAACACAGTAATCTGAAAAAGTTAAAAATTTTTTGATCCAGAATAAACTTA-TTTTTTCCCCTAATCCTGAGGGCTACTTCCTAGGTAGCTGATAATAGA--------------AACCAAACCAGAAGAACATATGTAAGTGAGTTAAAATAGTCTCTGAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTAGGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47683379 234 + 74645514 ATTatgggaaaagaaaacacagtaatctgaaaaagttaaaaaatttttgatccagaataaactta-ttttttcccctaatCCTGAGTGCTACTTCCTAGGTAGCTGATAATAGA--------------AACCAAACCAGAAGAACATATGTAAGTGAGTTAaaatagtctctgaggatttATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGGGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGCAAAAAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9950631 234 - 75148670 ATTATAGGAAAAGAAAACACAGTAATTTGAAAAAGTTAAAAATTTTTTGGTCCAGAATAAACTTA-TTTTTTCCCCTAATCCTGAGTGCTACTTCCTAGCTAGCTGATAATAGA--------------AACCAAACCAGAAGAACATATGTAAATGAGTTAAAATAGTCTCTGAGGATTTATTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGGGTTTGAATTTAGTGATTCTCTTTACACATCGACACTT-ATGCAAAAAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112823127 231 + 159171411 ATTATAGGAAA--AAAACACATTAATCTGAAAAAGTTAAAAAATTTATGATCCAAAATAAACTTA-TTTCTTCTCCTAATCTTGAGTGCTGCTTCCTGGGTAGCTGAGAAGAGA--AACCAAA--CCAAACCAAGCCAG-AGAACATATGTAAGTGAGTTAAAATAGTCTC----------TTACTCC----------------CTGGG----------------------------------------------CAGAG------------------TTGAGTTTGAATTTAGTGATTCTCTTTACACATCAACACTT-ATGAGAAAAG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39365055 327 - 61074082 TTTACTGGAA---AAGGCCCACTATTCTGACAAAGTTAAAATTTTCATGATCCAGAAAAAACTAAAAATTTTTTTCTAACTCTGAACACTACTTCCTAGGTAGCTGATGATGGAAAAACCAAAACCAAAAACAAACCAAGAGGTCTTAAATAGATGGACTTAAATAGTCCCTTAGTATGTATTACtctcccatctaaatactaaccgggcctgaccctgcttagcttccaagatcagataggattggaacactttcagggtggtatggttgtagacTCTTGGGTTTGATTTTAGTGATTCTCTTCACATTTCAACACTTAATGCTAAATG i canFam3.chr9 C 0 I 1192 e mm10.chr11 99544612 5381 + 122082543 I a score=935208.000000 s hg38.chr17_JH159146v1_alt 135118 278 + 278131 TTCTTA-GAGTGTCTCATGGTATATTGACGCTGCTCTGCAACAAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAATATCTGTGAAGAAAACCCATGTTTTGGTTGTCCATCACAGGCTCCAGTTAGCTAAAATGCAG----------------TCATGTAAGTGCAGGT-AAAATAAGAAATATTTCCTTCTGTCTGGAACTAATTTCTAATTGTAAATTATTTGTTACTGG s panTro4.chr17 66255654 278 - 82630442 TTCTTA-GAGTGTCTCATGGTATATTGACGCTGCTCTGCAACAAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAATATCTGTGAAGAAAACCCATGTTTTGGTTGTCCATCACAGGCTCCAGTTAGCTAAAATGCAG----------------TCATGTAAGTGCAGGT-AAAATAAGAAATATTTCCTTCTGTCTGGAACTAATTTCTAATTGTAAATTATTTGTTACTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24788598 277 - 73212453 TTCTTA-GAGTGTCTCATGGTATATTGATGCTGCTCTGCGACAAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAATATCTTTGAAGAAAACCCATGTTTTGGTTGTCCATCACGGGTTCTA-TTAGCTAAAATGCAG----------------TCGTGTAAGTGCAGGT-AAAATAAGAAATATTTCCTTTTGTCTGGAACTAATTTCTGATTGTAAATTATTGGTTACTGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48010870 277 - 81552678 TTCTTA-GAGTGTCTCATGGTATATTGACGCTGCTCTGCAACGAATATGAGTTCCAGGATTCAAAAACAC-TTCCGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACGGTAACCTAATGAGTCAAAAGAAAAATATCTTTGAAGAAAACCCATGTTTTGGTTGTCCATCACAGGTTCCAGTTAGCTAAAATGCAG----------------TCATGTAAGTGCGAGT-AAAATAAGAAATATTTCCTT-TGTCTGGAACTAATTTCTAATTGTAAAGTATTGGTTACTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53116068 278 + 80904711 TTCTTA-GAGTGTCTCATGGTATATTGACGCTGCTCTGCAACGAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAGTATCTTTGAAGAAAACCCACGTTTTGGTTGTCCATCACAGGTTCCAGTTAGCTAAAGCGCAG----------------TCATGTAACTGCAGGT-AAAATAAGAAATATTTCCTTTTGTCTGGAACTAATTTCTAATTGTAAAGTACTGGTTACTAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52640206 278 + 80997621 TTCTTA-GAGTGTCTCATGGTATATTGACGCTGCTCTGCAACGAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAGTATCTTTGAAGAAAACCCACGTTTTGGTTGTCCATCACAGGTTCCAGTTAGCTAAAGTGCAG----------------TCATGTAACTGCAGGT-AAAATAAGAAATATTTCCTTTTGTCTGGAACTAATTTCTAATTGTAAAGTATTGGTTACTAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47683613 277 + 74645514 TTCTTACGAGTGTCTCATGGTATATTGATGCTGCTCTGCAACGAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTctgaaagaaaat--tc---ttttcacAGTAACCTAatgagtcaaaagaaaaatatctttgaagAAAACCCACGTTTTGGTTGTCCATCACAGGTTCCAGTTAGCTAAAGTGCAG----------------TCATGTAACTGcaggt-aaaataagaaatatttccttttgtctgGAACTAATTTCTAATTGTAAAGTACTGGTTACTAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9950865 278 - 75148670 TTCTTA-GAGTGTCTCATGGTATATTGACACTGCTCTGCAACGAATATGAGTTCAAGGATTCAAAAACAC-TTCTGA------AAAATTACAAATCTCTGAAAGAAAATTATC---TTTTCACAGTAACCTAATGAGTCAAAAGAAAAATATCTTTGAAGAAAACCCACGCTTTGGTTGTCCATCACAGGTTCCAGTTAGCTAAAGTGCAG----------------TCATGTAACTGCAGGT-AAAATAAGAAATATTTCCTTTTGTCTGGAACTAATTTCTAATTGTAAAGTATTGGTTACTAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112823358 278 + 159171411 TTTTTA-GAGTGCTTCATGGTATGCTGATGCTGCTTTGCAACAAACACAAGTTCAAGGATTCAAAAACACTTTCAAA------AAAATCACAACTCTCTGAAAGAAAACGATC---TTTTCGCAGTAACTTAATGAGTCAAAAGAAAAACATCTTTGAAGAAAACCCATGTTTTGGTGGCCCGTCACAGGTTCCACTTAGCTAAAATGCAG----------------TAACGCAATTGCAGGT-AAAATGGAAAATATTTCCTTTTGTCTTGAACTAA-TTCTAATTGTAAAGTGTTGGTTACTGG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39366574 277 - 61074082 TTCTTG-GAGTA-CTGATGGTATATTAATGCTGTTCTGCAATAGACGGGAGTTCAAGGAATCAAAAACAT-ATTTGAAAATTGAAAGTTACAAATCTCTGAAAAAAAAA-ATCTAATTTCCACAGTAACTGAATGAG-------------------------AATCCGTGTCTTGGTTGTCTGTCATAGGTTTCAGCTAATTAAAATGCAGCATTGTGTCATTATTTTAAAGTAACTGCAGGTAAAAATAAGAAATATTTTCTTTTATCTTGAGCTAATTTCTATTTGTAAAATGTTGACATATGg i canFam3.chr9 I 1192 I 38 e mm10.chr11 99544612 5381 + 122082543 I a score=19210.000000 s hg38.chr17_JH159146v1_alt 135396 7 + 278131 TTATTGT s panTro4.chr17 66255932 7 - 82630442 TTATTGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24788875 7 - 73212453 TTATTGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48011147 7 - 81552678 TTATTGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53116346 7 + 80904711 TTAGTGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52640484 7 + 80997621 TTAGTGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47683890 7 + 74645514 TTAGTGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9951143 7 - 75148670 TTAGTGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112823636 7 + 159171411 TTATTGT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39366851 38 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I a score=334958.000000 s hg38.chr17_JH159146v1_alt 135403 96 + 278131 CCTGCAG-GTAGGACTATTTATTTTGGTCTTGATTAATTAGGTAGTGTTGT---ATAATGATCTATAGCTATAGTCTCCATCGTAGAATATAGAAATCAC s panTro4.chr17 66255939 96 - 82630442 CCTGCAG-GTAGGACTATTTATTTTGGTCTTGATTAATTAGGTAGTGTTGT---ATAATGATCTATAGCTATAGTCTCCATCGTAGAATATAGAAATCAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24788882 96 - 73212453 CCTGCAG-GTAGGACTATTTATTTTGGTCTTGATTAATTAGGTAGTGTTGT---ATAATGATCTATAGCTATAGTCTCCATCGTAGAATATAGAAATCAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48011154 97 - 81552678 CCTGCAGAGTAGGACTATTTATTTTGGTCTTGATTAATTAGGTAGTGTTGT---ATAATGATCTATAGCTATAGTCTCCATCGTAGAATATGGAAATCAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53116353 100 + 80904711 CCTGCAGGGTAGGACTATTTATTTTGTTCTTGATTAATTAGGTAGTGTTGTATAATAATGATCTATAGCTATAGTCTCCATCGTAGAATATGGAAATCAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52640491 100 + 80997621 CCTGCAGGGTAGGACTATTTGTTTTGTTCTTGATTAATTAGGTAGTGTTGTATAATAATGATCTATAGCTATAGTCTCCATCGTAGAATATGGAAATCAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47683897 100 + 74645514 CCTGCAGGGTAGgactatttattttgttcttgattAATTAGGTAGTGTTGTATAATAATGATCTATAGCTATAGTCTCCATCGTAGAATATGGAAATCAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9951150 100 - 75148670 CCTGCAGGGTAGGACTATTTGTTTTGTTCTTGATTAATTAGGTAGTGTTGTATAATAATGATCTATAGCTACAGTCTGCATCGTAGAATATGGAAATCAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112823643 97 + 159171411 CCTGCAGGGCAGGACTGTTTATGTTGGTCTTGATGAATTAGGTAATGTTGT---ATAATAATCTACAGCTGTAGTCTCCATTGTAGAATATGGAAATTGC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39366889 96 - 61074082 CAAACAC-ACAGGACTATTTATTTTGGGCTTGATTAATTAGATAGTATTGT---ATGACGATCTATAGCTTTAGTTCTCATCTTAGAATATTGAAATTAC i canFam3.chr9 I 38 I 165 e mm10.chr11 99544612 5381 + 122082543 I a score=209652.000000 s hg38.chr17_JH159146v1_alt 135499 69 + 278131 CCAGAATTCATTTCtgtggagtcctccttagggaaaagaagtcaggctggcaggaccagaggaaagcaa s panTro4.chr17 66256035 69 - 82630442 CCAGAATTCATTTCtgtggagtcctccttagggaaaagaagtcaggctggcaggaccagaggaaagcaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24788978 69 - 73212453 CCAGAATTCGTTTCtgtggagtcctccttagggaaaagaagtcaggctggcaggaccagaggaaagtga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48011251 69 - 81552678 CCAGAATTCATTTCtgtggagtcctccttagagaaaagaagtcaggctggcaggacaagaggaaagcaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53116453 68 + 80904711 CCAGAATTCATTTCtgtggagtcctccttagggaagagaagtcaggctggcaggaccagaggaaagca- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52640591 68 + 80997621 CCAGAATTCATTTCtgtggagtcctccttagggaagagaagtcaggctggcaggaccagaggaaagca- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47683997 68 + 74645514 CCAGAATTCATTTCTGTGGAGTCCTCCTTAGGGAAGAGAAGTCAGGCTGGCAGGACCagaggaaagca- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9951250 68 - 75148670 CCAGAATTCATTTCtgtggagtcctctttagggaagagaagtcaggctggcaggaccagaggaaagca- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112823740 69 + 159171411 CCAGAATTCATTTCtgtgatgccctccttagggaaaagaagtcaggcttgcaggaccacaggaaagcaa i calJac3.chr5 C 0 I 853 e canFam3.chr9 39366985 165 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I a score=38.000000 s hg38.chr17_JH159146v1_alt 135568 1 + 278131 g s panTro4.chr17 66256104 1 - 82630442 g i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24789047 1 - 73212453 a i ponAbe2.chr17 C 0 I 23 e canFam3.chr9 39366985 165 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I e calJac3.chr5 112823809 853 + 159171411 I e chlSab2.chr16 9951318 0 - 75148670 C e papAnu2.chr16 47684065 0 + 74645514 C e macFas5.chr16 52640659 0 + 80997621 C e rheMac3.chr16 53116521 0 + 80904711 C e nomLeu3.chr19 48011320 0 - 81552678 C a score=-7045.000000 s hg38.chr17_JH159146v1_alt 135569 81 + 278131 ttagtgggtgcagcgcaccagtatggcacatgtatacatatataactaacctgcacaatgtgATAAATAAATAAAAAAAAC s panTro4.chr17 66256105 81 - 82630442 ttagtgggtgcagcgcaccagtatggcacatgtatacatatgtaactaacctgcacaatgtgATAAATAAATAAAAAAAAC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48011320 10 - 81552678 ----------------------------------------------------------------------aaaaaaaaaa- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53116521 13 + 80904711 --------------------------------------------------------------------aaaaaataaaaat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52640659 13 + 80997621 --------------------------------------------------------------------aaaaacaaaaaac i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47684065 11 + 74645514 --------------------------------------------------------------------aaaaaaaaaaa-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9951318 10 - 75148670 --------------------------------------------------------------------aaaaaaaaaa--- i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24789048 23 - 73212453 I e canFam3.chr9 39366985 165 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I e calJac3.chr5 112823809 853 + 159171411 I a score=25851.000000 s hg38.chr17_JH159146v1_alt 135650 27 + 278131 CAAAAAACAAa-----aaacaaagaaagaaag s panTro4.chr17 66256186 26 - 82630442 -AAAAAACAAa-----aaacaaagaaagaaag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24789071 27 - 73212453 aagaaagcaaa-----aaacaaagaaagaaag i ponAbe2.chr17 I 23 C 0 s nomLeu3.chr19 48011330 19 - 81552678 --------aaa-----aaaaaaaaaaagaaag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53116534 31 + 80904711 -aaaaaataaaaaataaaaaaaagaaagaaag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52640672 20 + 80997621 ------------aaccaaaaaaagaaagaaag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47684076 16 + 74645514 ----------------aaaaaaaaaaagaaag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9951328 16 - 75148670 ----------------aaaaaaaaaaaaaaag i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39366985 165 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I e calJac3.chr5 112823809 853 + 159171411 I a score=1067817.000000 s hg38.chr17_JH159146v1_alt 135677 371 + 278131 caggtaatgtataagactcaccttct----tcatggtccaggacacatagcc-------ctcctg-----------cacaatattcctgcacccagctatcaccagaccttcagctgatagaaaaatgtaacttagctcactgcaaccttagtgttatcagtaccacacaaaccctcttcagcacacagtacaagcaccatcctgtaaaatctccagcacgcctttgtctccttgcagacagccccttctctgctgtgctgcccattgcttccttgcaacgtattttcatacgttctctaatatatctgcctttctttacctacaactatcttgataaattcttcttacccccatgccaccagccccagatagttgctaat---------------------------------------------------------------------------------cacccgtgacaA s panTro4.chr17 66256212 371 - 82630442 caggtcatgtataagactcaccttct----tcatggtccgggacacatagcc-------ctcctg-----------cacaatattcctgcacccagctatcaccagaccttcagctgatagaaaaatgtaacttagctcactgcaaccttagtgttatcagtaccacacaaaccctcttcagcacacagtacaagcaccatcctgtaaaatctccagcactcctttgtctccttgcagacagccccttctctgctgtgctgcccattgcttccttgcaacgtattttcatacgttctctaatatatctgcctttctttacccacaactatcttgataaattcttcttacccccatgccaccagccccagatagttgctaat---------------------------------------------------------------------------------cacccgtgacaA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24789098 371 - 73212453 cagataagctataagactcaccttct----tcatggtccaggacacatagcc-------ctcctg-----------cacaatattcctgcacccagctatcaccagaccttcagctgatagaaaaatgcaacttagctcactgcaaccttagtgttatcagtaccgcacaaaccctcttcagcacacagcataagcaccatcctgtaaaatctccagcacacctttgtctccttgcagacagctgcttctctgctgtgctgcccattgcttccttgcaacatattttcatacgttctctgatacatctgcctttctttacctacaactatcttgataaattcttcttaccctcatgccaccagccccagatagttgctaat---------------------------------------------------------------------------------cacccgtgacaA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48011349 370 - 81552678 caggtaagctatgagactcaccttct----tcatggtccaggacacatggcc-------ctcctg-----------cacaatattcctgcacccagctatcactagaccttcagctgatagaaaaatgcaacttagctccctgcaaccttagcgttatcagtaccgcacaaacccttttcagcacacagcacaagcaccatcctgtaaaatctccagcacgcctttgtccccttgcagacagccccttctctgctgtgctgcccattgcttcctcgcaacatattttcatatgttctctaatacatctgcctttctttacctacaactatcttgataaattcttcttaccc-catgccaccagccccagatagtcactaat---------------------------------------------------------------------------------cacccgtgacaA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53116565 374 + 80904711 cagatacgctataagattcatcttct-tcatcatggtccaggacacataacc-------ctcctg-----------cacaatatttctgcacccagctatcaccagactttcagctgatagaaaaatgcaacttagctcactgcaacctttgtgttatcagtaccgcacaaaccttcttcagcacacagcacaagcaccatcctgtaaaatctccagcacaccttttcctccttgcagacagccccttctctgctgtgcttcccattgcttccttgcaacgtattttcatactttctctaataaatctgcctttctttacctacaactatgttgataaattctttttacccccatgccgccagccccagatagtcgctaat---------------------------------------------------------------------------------cacccgtgacaA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52640692 374 + 80997621 cagatacgctataagattcatcttct-tcatcatggtccaggacacatagcc-------ctcctg-----------cacaatatttctgcacccagctatcaccagactttcagctgatagaaaaatgcaacttagctcactgcaacctttgtgttatcagtactgcacaaaccctcttcagcacacagcacaagcaccatgctgtaaaatctccagcacacctttttctccttgcagacagccccttctctgctgtgctgcccattgcttccttgcaacgtattttcatactttctctaataaatctgcctttctttacctacaactatgttgataaattctttttacccccatgccgccagccccagatagtcgctaat---------------------------------------------------------------------------------cacccgtgacaA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47684092 374 + 74645514 cagatacGCTATAAGATTCACCTTCT-TCATCATGGTCCAGGACACATAGCC-------CTCCTG-----------CACAATATTTCTGCACCCAGCTATTACCAGACTTTCAGCTGATAGAAAAATGcaacttagctcactgcaacctttgtgtTATCAGTACTGCACAAACCCTGTTCAGCACAGAGCACAAGCACCATGCTGTAAAATCTCCAGCAAACCTTTTTCTCCTTGCAgacagccccttctctgctgtgctgcccatTGCTTCCTTGCAACgtattttcatactttctctaataaatctgcctttctttacctacaactaTGTTGATAAATTCTTTTTACCCCCATGCCACCAGCCCCAGATAGTCGCTAAT---------------------------------------------------------------------------------CACCCGTGACAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9951344 368 - 75148670 aagataagctac--gactcaccttct----tcgtggtccaggacacatagct-------ctactg-----------cacaatatttctgcacccagctatcaccagactttcagctgatagaaaaatgcaacttagctcactgcaaccttagtgttatcagtactgcacaaaccctcttcagcacacagcacaagcaccatgctgtaaaatctccagcacacctttttctccttgcagacagccccttctctgctgtgctgcccattgattccttgcaatgtattttcatactttctctaataaatctgcctttctttacctacaactatgttgataaattcttctta-ccccatgccaccagccccagatagtcgctaat---------------------------------------------------------------------------------cacccgtgacaA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112824662 474 + 159171411 cagataagctataagactgacctaccttcatcatggtccaggacacatagcccatagctctcctgcacaaataactcacaatcctccttcacccagctatcaccagactttcggctggtagaaaaatgaaagttagctcactgcagccttagtgttatcagtactgcacaaaccctcttcagcacacagcacaagcaccatcctgtaaatcccccagcacgcctttgtctccttaaagacagctccttctctgctgtgctgcctgttgctcccttgcaacctattttcatactttgtctaataaatctgcccttcattacccacacctatcttgataaattcttcttacccccatgccaccaactccagatagtcactaatgcccatgacaATTTCTTTTTTTTAATTGCATTTTACATTTTGGGGTACATGTTTGCTGCATTCTCGGCAAACTGACACAAGAACCCATGACAA i calJac3.chr5 I 853 C 0 e canFam3.chr9 39366985 165 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I a score=347172.000000 s hg38.chr17_JH159146v1_alt 136048 129 + 278131 TTTCTATAGCATATCATCACCAGAAGAAAGGAACATTGGGAATAGAGAAAAAGAAATAGACATCATGAAAGGCCATGATAAAAAAAAAAA---------------------------------------CCGACAACAACACGGTAGTTTATTTTGCATAATACTATG s panTro4.chr17 66256583 133 - 82630442 TTTCTATAGCATATCATCACCAGAAGAAAGGAACATTGGGAATAGAGAAAAAGAAATAGATGTCATGAAAGGCCATGATAAAAAAAAAAA-----------------------------------AAAACCGACAACAACACGGTAGTTTATTTTGCATAATACTATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24789469 133 - 73212453 TTTCTATATCATATCATCATCAGAAGAAAGGAACATTGGGAATAGAGAAAAAGAAATAGACGTCATGAAAGGCCATGATAAAAAAAAAAA-----------------------------------AAAACCGACAACAACACGGTAGTTTATTTTGTATAATACTATG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48011719 131 - 81552678 TTTCTATAGCATATCATCATCAGAAGAAAGGAACATTGGGAATAGAGAAAAAGAAATAGACGTCATGAAAGGCTATGATAAATAAaacaa-----------------------------------caa--caacaacaacaCGGTAGTTTATTTTGTATAATACTATG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53116939 161 + 80904711 TTTCTGTGGTGCACCATCATCAGAAGAAAGGAACATTGGGAATACAGAAAAAGAAATAGATGTCATGAAAGGCCATGATAAaaaaaaaaaaccaaaaaaacagaaa-------acaacaacaacaaaaacaaacaaaaacaCTGTAGTTTATTTTGTATAATACTCTG i rheMac3.chr16 C 0 I 21 s macFas5.chr16 52641066 161 + 80997621 TTTCTGTGGTGCACCATCATCAGAAGAAAGGAACATTGGGAATACAGAAAAAGAAATTGATGTCATGAAAGGCCATGATaaaaaaaaaaaaccaaaaaaacagaaa-------acaacaacaacaaaaacaaacaaaaaCACTGTAGTTtattttgtataatactctg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47684466 145 + 74645514 TTTCTGTGGTGCATCATCATCAGAAGAAAGGAGCATTgggaatacagaaaaagaaatagatgtcATGAAAGGCcatgataaaaaaacaaaaacagaa------------------aacaacaacaaaaacaaacaaaagcactgTAGTTTATTTTGTATAATA----- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9951712 168 - 75148670 TTTCTATAGTGCACCATCATCAGAAGAAAGGAACATTGGGAATACAGAAAAAGAAATAGATGTCATGAAAGGCCATGATGaaaaaaaaaaaacacaaaaaaacaaaaaaacagaaaacaacaacaaaaacaaacaaaaacaCTGTAGTTTATTTTGTATAATACTCTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112825136 127 + 159171411 TTTCTATAGCACATTATCATCAGATGAAAGGAACACTGGGAATAGACAAAAAGAAATAGACATCATGAAAGGCCATGATTAAAAAAATAA-----------------------------------------AAGAATAACATAGTAGTTTATTTCATATAATAATATG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39367150 110 - 61074082 TTTTTATCGCATATTATCCTCAAAAGGAGGGAACACTGGGAATAAAGAAAATG-AATAGATGCCATTAAAGGTCATGA-----------------------------------------------------GAAGATGCCATTATTGTTTCTTCT-TGTAATATG--- i canFam3.chr9 I 165 C 0 e mm10.chr11 99544612 5381 + 122082543 I a score=10451.000000 s hg38.chr17_JH159146v1_alt 136177 7 + 278131 CTCTTAC s panTro4.chr17 66256716 7 - 82630442 CTCTTAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24789602 7 - 73212453 CTCTTAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48011850 7 - 81552678 CTCTTAT i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52641227 6 + 80997621 -tattat i macFas5.chr16 C 0 I 15 s chlSab2.chr16 9951880 7 - 75148670 CTCTTAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112825263 5 + 159171411 --CTCAT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39367260 7 - 61074082 CCCTTAC i canFam3.chr9 C 0 C 0 e mm10.chr11 99544612 5381 + 122082543 I e papAnu2.chr16 47684611 0 + 74645514 C e rheMac3.chr16 53117100 21 + 80904711 I a score=1262156.000000 s hg38.chr17_JH159146v1_alt 136184 371 + 278131 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTTCCTAAAATACAAACCTGCTTTTT-GTCGCCTTCCACTTATGGAATGcaaactttctaccttggcaaatatgaccttccctaacctggtgccaatttacctttctgggctcacttcctgatgttctgtctcacaaacccta-------------------------agctccagccatccttcaagcttcg-taggtactattttcttggtcaaatgctcttctgctattcgtttcctggatgaactcacatgtcaagactcagctgaaacgtcGTTCAACTGCCTCATGTGGAGATGT-GGCTCCTCCCAGAGCACTTTGCACGCATCTCTGCTATAGCAGTTGTCTTGTTGCTTTTAACATTT s panTro4.chr17 66256723 371 - 82630442 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTTCCTAAAATACAAACCTGCTTTTT-GTCGCCTTCCACTTATGGAATGcaaactttctaccttggcaaatatgaccttccctaacctggtgccaatttacctttctgggctcacttcctgatgttctctctcacaaacccta-------------------------agctccagccatccttcaagcttcg-taggtactattttcttggtcaaatgctcttctgctattcctttcctggatgaactcacatgtcaagactcagctgaaacgtcGTTCAACTGCCTCATGTGGAGATGT-GGCTCCTCCCAGAGCACTTTGCACGCACCTCTGCTATAGCAGTTGTCTTGTTGCTTTTAACATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24789609 371 - 73212453 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTTCCTAAAATACAAACCTGCTTTTT-GTCGCCCTCcacttacagaatgcaaactttctaccttggcaaatatgaccttccctaacctggtgccaatttacctttctgggctcacttcctgatgttctctcttacaaacccta-------------------------agctccagccatccttcaagctttg-taggtactattttcttggtcaaatgctcttctgctattcctttcctggatgaactcacatgtcaagactcagctgaaaCATTGTTCAACTGCCTTATGTGGAGATGG-GGCTCCTCCCAGAGCACTTTGCACGCATCTCTGCTATAGCAGTTGTCTTGTTGCTTTTAACATTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48011857 371 - 81552678 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTTCCTAAAATACAAACCTGCTTTTT-GTCGCCCTCCACTTATGGAGTGcaaactttctaccttggcaaatatgaccttccctaacctggtgccaatttatctttctgggctcacttcctgatgttctctctcacaaacccta-------------------------agctccagccatccttcaaggtttg-taggtactattttcttggtcaaatgctcttctgctattcctttcctggatgaacttacatgtcaagactcagctgaaacgtcGTTCAACTGCCTCATGTGGAGATGG-GGCTCCTCCCAGAGCACTTTGCATGCATCTCTGCTATAGCAGTTGTCTTGTTGCTTTTAACATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53117121 371 + 80904711 CTTACAACATCCACCTA-AGCTGCCAGAATCATTTCCCTAAAATACACACCTGCTTTTC-GTCGCCCTCcacttatggagtgcaagctttctaccttggcaaatatgaccttctctaacctagtgcccatttacctttctgggctcacttcatgatgttctctttcacaaacccta-------------------------agctccagccatccttcaagctttg-taggtactgttttcttggtcaaatgctcttctgccattcctttcctggatgaactcacatgtcaagacttagctgaaacatcattcagctgcctcatgtggaggtgg-ggctcctcccagagcacttcgcatgcatttctgctatagcagttgtcTTGTGGCTTTTAACATTT i rheMac3.chr16 I 21 C 0 s macFas5.chr16 52641248 371 + 80997621 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTCCCTAAAATACACACCTGCTTTTC-GTCGCCCTCcacttatggagtgcaagctttctaccttggcaaatatgaccttctctaacctagtgcccatttacctttctgggctcacttcatgatgttctctttcacaaacccta-------------------------agctccagccatccttcaagctttg-taggtactgttttcttggtcaaatgctcttctgccattcctttcctggatgaactcacatgtcaagacttagctgaaacatcaTTCAGCTGCCTCATGTGGAGGTGG-GGCTCCTCCCAGAGCACTTCGCATGCATTTCTGCTATAGCAGTTGTCTTGTGGCTTTTAACATTT i macFas5.chr16 I 15 C 0 s papAnu2.chr16 47684611 371 + 74645514 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTCCCTAAAATACCCACCTGCTTTTC-GTCGCCCTCCACTTATGGAGTGCAAGCTTTCTACCTTGGCAAATATGACCTTCTCTAACCTAGTGCCCATTTACCTTTCTGGGCTCACTTCGTGATGTTCTCTTTCACAAACCCTA-------------------------AGCTCCAGCCATCCTTCAAGCTTTG-TAGGTACTATTTTCTTGGTCAAATGCTCTTCTGCCATTCCTTTCCTGGATGAACTCACATGTCAAGACTTAGCTGAAACATCATTCAGCTGCCTCATGTGGAGGTGG-GGCTCCTCCCAGAGCACTTCGCATGCATTTCTGCTATAGCAGTTGTCTTGTGGCTTTTAACATTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9951887 371 - 75148670 CTTACAACATCCACCTA-GGCTGCCAGAATCATTTTCCTAAAATACACACCTGCTTTTC-GTCGCCCTCcacttatggagtgcaagctttctaccttggcaaatatgaccttctctaacctagtgcccatttacctttctgggctcacttcgtgatgctctctttcacaaacccta-------------------------agctccagccatccttcaagctttg-taggtactgttttcttggtcaaatgctcttctgccattcctttcctggatgaactcacatgtcaagacttagctgaaacatcGTTCAGCTGCCTCATGTGGAGATGG-GGCTCCTCCCAGAGCACTTCGCATGCATTTCTGCTATAGCAGTTGTCTTGTGGCTTTTAACATTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112825268 362 + 159171411 CCTACAACATCCACCT---------AGAATCATTTTCTTAAAATACAAACCTGTTTTTT-GTCACTCTCCACCTATGGAGTGCAGACTTTCTGCTTTGGCAAATATGA-CTTCCCTAACCTGGTGCCAATTTACCTTTCTTGGCTCActtcctgatgttctctctcacaaacccca-------------------------agctccagccatccttcaagctttgttaagtactgttttcttggtcaaatcctcttctgccattcctttcctggatgaactcacatgtcaagactcagctgaaaggtcaTTCAACTACCTCATGCTGAGATG--GGCTCCTCCCAGAGCACTTTGCACGAATCTCCACTGTAGCAATTGTCTTGTTGCTTTTAACATTT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39367267 382 - 61074082 CTCAGAAAATCCACTTACCGCTGCTAGACTCACTTTAGCAAAATACAAATCTATTTTTTGGTCACTTTCCACCTATGAAATCCAGACTTTCTGGCTTGACAAAAACAACCTTTTCCAATCTGGTGCCAGTTTACTTTTCTAGGCTAATTTCCTGATACTTTGTCTCACAAACCCTGTAGTCATCTTTGACTGTACAGCCTTGACTGTAGTCATCCTTCAAGCTTTG----------TTGCCTTGATTCATTGCTCTTCTGCCA------CCCGGCATGATCCTACTTGTTAAGAC--AGCTAGAATGGCATTCAGCAACCTCATGCTGAGATGGAGGCTTTtcctcttgcactctgcatacacctccactacagcggttgtcacagctctttaaactttt i canFam3.chr9 C 0 I 9536 e mm10.chr11 99544612 5381 + 122082543 I a score=5876911.000000 s hg38.chr17_JH159146v1_alt 136555 2042 + 278131 GTGCGAcaggttataagagtttacatgaggccttaagaaatttggctcagggccagagctagtatccacgtgcagcaacttggttga-ttttcactgttttgggcaacaacctaaataacttttaacagtgcctgggaatgttcaagggtcagctcgggttcaagctgcaggggaaacacacagctggctgggccac-agggtggtcaaggtaatc--tgtttcccaaggcaaagaaggaagtggagggatgatctgggtgaccctacaACATGATCAATCATATTGAATAacttggtcactctacattatcctttatgtaaattgttttattcagttagttgataggattagcaaatgga-tttccacccccatctatgttcttgagaaatatttcctgtaaatttcttttcttctaatgatcttgttaggttttggtatcaa-gttacatactgggttcacaatatgacttagctctgcgtccccacccaaacttcatctcaaattataaaccccaaatccccacgtgttaggggagggacctg------gatgattggatcatgggggcagtttcccgtatactgttcttgtgatagtgagttcgttctcaggaaatctaatggttttgtaagtgtgtgacagttcctccttcccacgctctctctcacctgccccca-tgtaagaagtgcctgcttccccttccaccattattgtaagtttcctgaggcct-ccccagccatgtggaactgggactcaattacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtaatactgttcataaattaaattgggaaatgtttcctctttatttcat--gaaattctgtaagattagtgttatttattccttaaatgtttgatggagtccagtgaggccacctcttccaggagtctcccatgtgaaaaagttgtgttttgtttttaactaggaaaaaaaa--tgtctgggcgcggtggctcaagcctgtaatcccagcactttgggaggcccaggcaggcagatcacttaagggcaggaggttgagaccagcctggctaatatgctgaaggcttgtctctactaaaaatacaaaaattagttgggcatagtggcgaacacctgtagtcctagcttttcgggaggctgaggcatgagaattgctgaaacctggaaggcagatgttgcggtgagccgagatcacaccattgcactccagcttgggtgagagtgagactccatttcaaacacacacacacacacacacacac--acacacacacacacacacacatgcacacacacacgcaaatatatgtatatttgctgacctctac------------------atcaaattgcttacctctacttatagaaacctcacaatgctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagttgttcataataatccttatcatgaattttagtatctgcagtgtctataaattctcactatttaattccagatattggtaatttgtgttttatctcatgcttcccccatcaatctggcttgatgttcatcagattaatactaatgtattgtttatttcaaggttgctgaaagagtaga-tttttgatgttctcaccataaaacaatgatcaggtgcttaggtgatggatatgttacttagcttgattta-tctttccacaatgcatacataaatcaaaacaccacattgtaccccacaaatatacatatacacaattattatttgccaactaaaaaataactaaatagaagtactttatgaatcctttcaaagaatcaaattttagcttcattaatttcctc----gttttcta-ttcattgatttctgatattatgtttattatttatttctttctccttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattgatgaagagataaatgaaggtgataaagatgtaaatcttattttct s panTro4.chr17 66257094 2016 - 82630442 GTGCGAcaggttataagagtttacatgaggccttaagaaatttggctcagggccagagctagtatccacatgcagcaacttggttga-ttttcactgttttgggcaacaacctaaataacttttaacagtgcctgggaatgttcaagggtcagctcgggttcaagctgcaggggaaacacacagctggccgggccac-agggtggtcaaggtaatc--tgtttcccaaggcaaagaaggaagtggagggatgatctgggtgaccctacaACATGATCAATCATATTGAATAacttggtcactctacattatcctttatgtaaattgttttattcagttagttgataggattagcaaatgga-tttccacccc-atctatgttcttgagaaatatttcctgtaaatttcttttcttctaatgatcttgttaggttttggtatcaa-gttacatactgggttcacaatatgacttagctctgcgtccccacccaaacttcatctcatattgtaaaccccaaatccccacgtgttaggggagggacctg------gatgattggatcatgggggcagtttcccgtatactgttcttgtgatagtgagttcgttctcaggaaatctaatggttttgtaagtgtgtgacagttcctccttcccacgctctctgtcacctgccccca-tgtaagaagtgcctgcttccccttccaccattattgtaagtttcctgaggcct-ccccagccatgtggaactgggactcaattacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtaatactgttcataaattaaattgggaaatgtttcctctttatttcat--gaaattctgtaagattagtgttatttattccttaaatgtttgatggagtccagtgaggccacctcttccaggagtctcccatgtgaaaaagttgtgttttgtttttaactaggaaaaaaaa--tg----ggcgcggtggctcaagcctgtaatcccagcactttgggaggcccaggcaggcagatcacttaagggcaggagtttgagaccagcctggctaatatgctgaaggcttgtctctactaaaaatacaaaaattggttgggcatagtggcgaacacctgtagtcctagcttttcgggaggctgaggcatgagaattgctgaaacctggaaggcagatgttgcggtgagccgagatcacaccattgcactccagcttgggtgagagtgagactccatttcaaacacacacacacacacacacgcac--acacacacacaca------------------------aatatatgtatatttgctgacctctac------------------atcaaattgcttacctctacttatagaaacctcacaatgctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagttgttcataataatccttatcatgaattttagtatctgcagtgtctataaattctcactatttaattccagatattggtaatttgtgttttatctcatgcttcccccatcaatctggcttgatgttcatcagattaatactaatgtattgtttatttcaaggttgctgaaagagtaga-tttttgatgttctcaccataaaacaatgatcaggtgcttaggtgatggatatgttacttagcttgattta-tctttccacaatgcatacataaatcaaaacaccacattgtaccccacaaatatacatatacacaattattatttgccaactaaaaaataactaaatagaagtactttatgaatcctttcaaagaatcaaattttagcttcattaatttcctc-attgttttcta-ttcattgatttctgatattatgtttattatttatttctttctccttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattgatgaagaggtaaatgaaggtgataaagatgtaaatcttattttct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24789980 2035 - 73212453 GTGCGACAGGTTGCAAgagtttacatgaggccttaagaaatttggctcagggccagagctagtatccacgtgcagcaacttggttga-ttttcactgttttgggcaacaacctaaataacttttaacagtgcctgggaatgttcaaggcccagctcgggttcaagctgcaggggaaacacacagctggccgggacac-agagtggtcaaggtaatc--tgtttcccaaggcaaagaaggaagtcggggggtgatctgggggatcctacaATATGATCAATCATATTGAATGacttggtcactctacattatcctttatgtaaattgctttattcaattagttgataggattagcaaatgga-tttttccccccatctatgttcatgagaaatatttcctgtaaatttcttttcttctaatgaccttgttaggttttggtatcaa-gttacatactgggttcacaatatgacttggctctgtgtccccacccaaacttcatctcaaattgtaatccccaaatccccgtgtgttaggggagggacctg------ggtgattggatcatgggggcagtttcccgtatactgttcttgtgatagtgagttcattctcaggaaatctaatggttttgaaagtgtgtgacagttcctccttcacacactctctctcacctgccccca-tgtaagaagtgcctgcttccccttccatcattattgtaagtttcctgaggcct-ccccag-catgtggaactgggactcaatcacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtaatactgttcataaattaaattgggaaatgtttcttctttatttcat--gagattctataagattagtgttatttattccttaaatgtttgatggagtccagtgaggccacctcttccaggagtctcccgtgtgaaaaagttgtgttttttttttaactaggaaaaaaaa---gtctgggcacggtggctcaagcctgtaatcccagtgctttgggaggcccaggcaggcagatcacttaagggcaggagtttgagaccagcctggctaatatgataaagccttgtctctactaaaaatacaaaaattagttgggcatagtggcaaacacctgtagtcctagcttttcgggaggctgaggcatgagaattgctgaaacctggaaggcagatgttgcggtgagccaagatcacaccattgcactccagcttgggtgagagtgagactccatttcaaacacacacacacacacacacacaccggcacacacacaca------------------------aatatatatatatttgctgacctctacatcaaata-ttaaaagatatcaaattgcttacctctacttatagaaaccccacaatgctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagttgttcataataatccttatcatgaattttagtatctgtagtgtctataaattctcactatttaattccagatattggtaatttgtgttttatctcatgcttcccccatcgatctggcttgatgttcatcagattaatactaatgtatcgtttatttcaaagttgctgaaagagtaga-tttttgatgttctcatcataaaacaatgataaggtgcttaggtgatgaatatgttaattagcttggttta-tctttccacaatgcatacataaatcaaaacaccacattgtacccgacaaatatacatatacacaattattatttgccaactaaaaaataactaaatagaagtactttatgaatcctttcaaagaatcaaattttagcttcattaatttcctc-attgttttctatttcattgatttctgatattatgtttattattta----tttctccttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgactgatgaagaggtaaatgaaggtgataaagatgtaaatcttattttct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48012228 2029 - 81552678 GTGCgtcagtttatgagagtttacatgaggctttaagaaatttggctcagggccagagctagtatccatgtgcagcaacatgattga-ttttcactgttttgggcaacaatctaaataac-tttaacagtgcctgg-------caaggcccggcttgggttcaagctgcaggggaaacacacagctggctaggccac-agggtggtcaaggtactc--tgtttcccaaggcaaagaaggaagtgggggggtgatctgggggaccctacaATATGATCAATCATATTGAATGacttggtcactctacattatcctttatataaattgctttattcaattagttgataggattagcaaatgga-ttttttcccccatctatgttcatgataaatatttcctgtaaatttcttttcttctaatgaccttgttaggttttggtatcaa-gttacatactgggttcacaatatgacttggcgctgtgtccccacccaaacttcatctcaaattgtaatccccaaatccccacatgttaggggagggacctggtgggaggtgattggatcatggggacagtttcccctatgctgttcttgtgatagtgagtttgtccttaggaaatctaatggttttgtaagtctgtgacagttcctccttcacatgctctctctcacctgccccca-tgtaagaagtgcctgcttccccttccaccattattgtaagtttcctgaggcct-ccccagccatgaggaactggaactcaattatacctccttcctttataaattatctagtctcagatattttttcataacagtgtgagaatggagtaatactgttcataaattaaattgggaaatgtttcctctttatttcat--gagattctataagattagtgttatttcttccttaaatgtttgatggagtccagtgaggtcacttcttccaggagtctcccatgtgaaaaaggtgtgttttgtttttaactaggaaaaaaa----gtctgggcatggtggctcaagcctgtaatcccagcactctgggaggcccaggcaggcagatcacttaagggcaggagtttgaggccagcctggctaatatgctgaagccttgtctctactaaaaatacaaaaattagttgggcatagtggcgaacacctgtagccctagcttttcgggaggttgaggcatgagaattgctgaaacctggaaggcagatgttgcagtgagccaagatcacaccattgcactccagcttgagtgagagtgagactccatttcaaacacacacacacacacat--------gcacacacataca------------------------aatatatatatatttgctgacctctacatcaaata-ttaaaaaatatcaaattgcttacctctacatatagaaaccccacaatgctattcagttgttctgtttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagttgttcataataatccttatcatgaattttagtatctgtagtgtctataacttctcactatttaatttcagatattggtaatttgtgttttatctcatgcttcccccatcaatctggcttgatgttcatcagattaatactaatgtatcatttatttcaaagctgctgaaagagtaga-tttttgatgttctcaccataaaacaatgataaggtgcttaggtgatggatatgttcattagctcgattta-tctttccacaatgcatacataaatcaaaacaccacattgtaccccacaaatatatatatacgtaattactatttgccaactaaaaagtaactaaatagaagtactttatgaatcctttcaaagaatcaaattttagcttcattaatttcctc-attgttttctatttcattgatttctggcattatgtttattatttatttctttctccttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattgatgaagatgtaaatgaaggtgataaagatgtaaatcttattttct i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53117492 2033 + 80904711 GTGCAtcaggttataagagtttacatgcggctttaagaaatttggctcagggccaaggctagtatatacacgcagtaacaaggttga-ttttcactgttttgggcaacaacctaagtaac-tttaacagtgcctgggaatgttcaaggcccggctcgggttcaagctgcaaggggaacacacagctggctgggccac-gggatgatcaaggcactc--tgtttcccaaggcaaagaaggaagtgg-gggctgatctgggggaccctacaGTACGATCAATCATCTTGAATGacttggtcactctacattatcttttacataaattgctttattcaattagttgacaggattagcaaatgga--ttttccccccatctatgttgatgagaaatattgcccgtaattttcctttcttctaatgacctagctaggttttggtatcaa-gttgtatactgggttcacgatatggcttggctttgtgt-cccacccaaacttcatcttgaattgtaatccccaaatccccacgtgttaggtgagggacctggtgggaggtgattggatcataggggcagtttcctctatgctgttcttgtgatagtgagtgagttctcaggaaatctaatggttttgtaagtgtgtgacagttcctccttcacccgctgtctctcactggccccca-tgtaagaagtgcctgcttccccttgcaccattattgtaagtttcctgaggcct-ccctagccatgtggaactgggactcaattacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtaatactgttcataaattaaattgagaaatgtttcctctttatttcat--gagattctattagattagtgttatttcttccttaaatgtttgatggagtccagtgaggccatctcttccaggagtctcccatgtgaaaaagttgtgttttgtttttaactaggaaaaaaaa---gtctgggcatggtggctcaagcctgtaatcccagcattttgggggg-ccaggcaggcagatcacttaagggca-gagttcgagaccagcctggctaatatgctgaagccttgtctccactaaaaatacaaaaaatagctgggcatagtggcaaacacctgtagtcctagcttttcgggaggctgaggcatgaaaattggtgaaacctggaaggtggaggttgcagtgagtcgagatcacaccattgcactctagcttggatgagagtgagactccgtttcaaacacacatacacatacacacac----gcccacacacaca------------------------aatatatatatatttgcttacctctacatcaaata-ttaaaaaatatcaaattgcttacctctacatatagaaaccccacaaagctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagtggttcgtaataatccttatcatgaattttagtatctgtagtgtctatatattctcactatttaattccagatgttggtaatttgtgttttatttcatgcttcccccatcaatctggcttgatgttcatcagattaatactaatgtattgtgtatttcaaagttgctgaaagagtagatttttttatgttctcaccataaaacaatgataaggtg-ttaggtgatggatatgttaattagcttgatttactgtttccacaatg----cataaatcgaaacaccacattgcaccccacaaacatacatatatacaattattatttgccaactaaaaaataactaaataaaagtacttcatgaatcctttcaaagaatcatattttagcttcattaatttcctc-attgctttctatttcattgacttctgatattatgtttattgtttctttctttctacttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattaaagaagatataaatgaaggtgataaagatgtaaatcttattttct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52641619 2030 + 80997621 GTGCAtcaggttataagagtttacatgcggctttaagaaatttggctcagggccaaggctagtatatacacgcagtaacaaggttga-ttttcactgttttgggcaacaacctaagtaac-tttaacagtgtctgggaatgttcaaggcccggctcgggttcaagctgcaaggggaacacacagctggctgggccac-gggatgatcaaggcactc--tgtttcccaaggcaaagaaggaagtgg-gggctgatctgggggaccctacaGTACGATCAATCATCTTGAATGacttggtcactctacattatcttttacataaattgctttattcaattagttgacaggattagcaaatgga--tttttcccccatctatgttgatgagaaatattgcccgtaattttcctttcttctaatgacctagctaggttttggtatcaa-gttgtatactgggttcacgacatggcttggctttgtgt-cccacccaaacttcatcttgaatcgtaatccccaaatccccacgtgttaggtgagggacctggtgggaggtgattggatcataggggcagtttcctctatgctgttcttgtgatagtgagtgagttctcaggaaatctaatggttttgtaagtgtgtgacagttcctccttcacatgctgtctctcactggccccca-tgtaagaagtgcctgcttccccttccaccattattgtaagtttcctgaggcct-ccctagccatgtggaactgggactcaattacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtaatactgttcataaattaaattgagaaatgtttcctctttatttcat--gagattctattagattagtgttatttcttccttaaatgtttgatggagtccagtgaggccatctcttccaggagtctcccatgtgaaaaagttGTGTTTTGTTTTTAACTAGGAAAAAAAA---GTctgggcatggtggctcaagcctgtaatcccagcattttgggggg-ccaggcaggcagatcacttaagggca-gagttcgagaccagactgg---gtatgctgaagccttgtctccactaaaaatacaaaaaatagctgggcatagtggcaaacacgtgtagtcctagcttttcgggaggctgaggcatgaaaattggtgaaacctggaaggtggaggttgcagtgagtcgagatcacaccattgcactctagcttggatgagagtgagactccgtttcaaacacacatacacatacacacac----gcccacacacaca------------------------aatatatataTATTTGCTTACCTCTACATCAAATA-TTAAAAAATATCAAATTGCTTACCTCTACATATAGAAACCCCACAAAGctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagtggttcgtaataatccttatcatgaattttagtatctgtagtgtctatatattctcactatttaattccagatgttggtaatttgtgttttatttcatgcttcccccatcaatctggcttgatgttcatcagattaatactaatgtattgtatatttcaaagttgctgaaagagtagatttttttatgttctcaccataaaacaatgataaggtg-ttaggtgatggatatgttaattagcttgatttactgtttccacaatg----cataaatcaaaacaccacattgcaccccacaaacatacatatatacaattattatttgccaactaaaaaataactaaatagaagtacttcatgaatcctttcaaagaatcatattttagcttcattaatttcctc-attgctttctatttcattgacttctgatattatgtttattatttctttctttctacttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattaaagaagatataaatgaaggtgataaagatgtaaatcttattttct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47684982 2034 + 74645514 GTGCATCAGGTTATAAGAGTTTACATGCGGCTTTAAGAAATTTGGCTCAGGGCCAAGGCTAGTATATACACGCAGTAACAAGGTTGA-TTTTCACTGTTTTGGGCAACAACCTAAGTAAC-TTTAACAGTGCCTGGGAATGTTCAAGGCCCGGCTCGGGTTCAAGCTGCAAGGGGAACACACAGCTGGCCGGGCCAC-GGGATGATCAAGGCACTC--TGTTTCCCAAGGCAAAGAAGGAAGTGG-GGGCTGATCTGGGGGACCCTACAGTACGATCAATCATCTTGAATGACTTGGTCACTCTACATTATCTTTTACATAAATTGCTTTATTCAATTAGTTGACAGGATTAGCAAATGGA-TTTTTTCCCCCATCTATGTTGATGAGAAATATtgcctgtaattttcctttcttctaatgACCtagctaggttttggtatcaa-gttGTATACTGGGTTCACAATATGGCTTGGCTTTGTGT-CCCACCCAAacgtcatcttgaattgtaatccccaaatcCCCACGTGTTAggtgagggacctggtgggaggtgattgggtcataggggcagtttcctctttgctgttcttgtaatagtgagtgagttctcaggaaaCCTAATGGTTTTGTAAGTGTGTGACAGTTCCTGCTTCACACGCTGTCTCTCACTGGCCCCCATTGTAAgaagtgcctgcttccccttccaccattattgtaagtttcctgaggcct-ccctagccatgtggaactgggacTCAATTacacctccttcctttataaattatccagtctcagatatttctttataacagtgtgagaatggagtAATACGGTTCATAAATTAAATTGAGAAATGTTTCCTCTTTATTTCAT--GAGATTCTATTAGATTagtgttatttcttccttaaatgtttgatggaGTCCAGTGAGGCCATCTCTTCCAGGAGTCTCCCATGTGAAaaagttgtgttttgtttttaactaggaaaaaaaa---gtctgggcatggtggctcaagcctgtaatcccagcattttgggagg-ccaggcaggcagatcacttaagggca-gagtttgagaccagcctggctaatatgctgaagccttgtctccactaaaaatacaaaaaatagctgggcatagtggcaaacacctgtagtcctagctttttgggaggctgaggcatgaaaattggtgaaacctggaaggtggaggttgcagtgagtcgagatcacaccattgcactctagcttggatgagagtgagactccgtttcaaacacacatacacatacacacac----gcccacacacaca------------------------aatatatatatatttgcttacctctacatcaaata-ttaaaaaatatcaaattgcTTACCTCTACATATAGAAACCCCACAAAGCTATTCAGttgttctatttcattttgtgtgAAAGTTGCA--TTTTTCAAGGAGTTTGTTCACTTCACCTAAGTtgcaaaaatactgaaataaagtGGTTCGTAATAATCCTTATCATGAATTTTAGTATCTGTAGTGTCTATATATTCTCACTATTTAATTCCAGAtgttggtaatttgtgttttatCTCATGCTTCCCCCATCAATCTGGCTTGATGTTCATCAGATTAATACTAacgtattgtatatttcaaagttgcTGAAAGAGTACA-TTTTTTATGTTCTCACCATAAAACAATGATAAGGTG-ttaggtgatggatatgttaattagcttgatttactGTTTCCACAATG----CATAAATCAAAACACCACATTGTACCCCacaaacatatgtatacacaattattatttgccaactaaaaaataactaaatagaaGTACTTCATGAATCCTTTCAAAGAATCATATTTTAGCTTCATTAATTTCCTC-ATTGCTTTCTATTTCATTGACTTCtgatattatgtttattatttctttctttctacttactttgaattttagttgttctttttctatttagttgaaatgaaaacttaagtGATTGAAGAAGATATAAATGAAGGTGATAAAGATGtaaatcttattttct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9952258 2030 - 75148670 GTGCAtcaggttataagagtttacatgcggctttaagaaatttggctcagggccagggctattatatacacgcagtaacaaggttgatttttcactgttttgggcaacaacctaagtaac-tttaacagtgcctgggaatgttcaaggcctggctcgggttcaagctgcagggggaacacacagctggctgggccac-gggatgatcaaggcactc--tgtttcccaaggcaaagaaggaagtgg-ggggtgatctgggggaccctacaGTACGATCAATCATCTTGAATGacttggtcactctacattatcctttacataaattgctttattcaattagttgacaggattagcaaatgga-ttttttccctcctctatgttgatgagaaatattgcctgtaattttcctttcttctaatgccctagctaggttttggtatcaa-gttgtatactgggttcacgatatggcttggctttgtgt-cccacccaaacttcatctcaaattgtaatccccaaatccccacatgttaggggagggacctggtgggaggtgattggatcatgggggcagtttcccctatcctgttcttgtgatagtgagtgagttcttgggaaatctaatggttttgtaagtgtgtgacagttcctccttcacacgctgtctctcactggcccccattgtaagaagtgcctgcttccccttccaccattattgtaagtttcctgaggcctcccctagccatgtggaactgggactcaattacacctccttcctttataaattatccagtatcaggtatttctttataacagtgtgagaatggagtaatactgttcatgaattaaattgagaaatgtttcctctttatttcat--gagattctattagattagtgttatttcttccttaaatgtttgatggagtccagtgaggccatctcttccaggagtctcccatgtgaaaaagttGTGTTTTGCTTTTAACTAGGAAAAAAAA---GTctgggcatggtggctcaagcctgtaatcccagcattttgggagg-cgaggcaggcagatcacttaagggca-gagtttcagaacagcctggctaatatgctgaagccttgtctccactaaaaatacaaaaaatagctgggcatagtggcaaacacctgtagtcctagcttttcgggaggctgaggcatgaaaattggtgaaacctggaaggtggaggttgcagtgagtcgagatcataccattgcactctagcttggatgagagtgagactccgtttcaaac------acacatacacacac----gcccacacacaca------------------------AATATATATATATTTGCTTACCTCTACATCAAATA-TTAAAAAATATCAAATTGCTTACCTCTACATATAGAAACCCCACAAAGctattcagttgttctatttcattttgtgtgaaagttgca--tttttcaaggagtttgttcacttcacctaagttgcaaaaatactgaaataaagtggttcgtaataatccttatcatgaattttagtatctgtagtgtctatatattctcactatttaattccagatgttggtaatttgtgttttatctcatgcttcccccatcaatctggcttgatgttcctcagattaatactaatgtattgtatatttcaaagttgctgaaagagtaga-ttttttatgttctcaccataaaacaatgataaggtg-ttaggtgatggatatgttaattagcttgatttactgtttccacaatg----cataaatcaaaacaccacattgtaccccacaaacatacatatacacaattattatttgccaactaaaaaataactaaatagaagtacttcatgaatcctttcaaagaatcatattttagcttcattaatttcctc-attgctttctatttcattgacttctgatattatgtttattatttctttctttctacttactttgaattttaattgttctttttctatttagttgaaatgaaaacttaagtgattgaagaagatataaatgaaggtgataaagatgtaaatcttattttct i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112825630 2039 + 159171411 GTGCATCAGGTTCTAAgagtttacatgcagctttaagaactttgactcagggcaagggcgagtatctacgtgtagcaacatggttga-tttttactgttttggacaacaacctaaataac-tttaatagtgcctgggaacgttcaaggcccgactcaggttcaggctgcaggggaaacactcagctggctgggccacaagggtggtcaaggcactctgtgtttcccaaggcaaagaaagaagtg--gggatgaactgggggaccctacaATATGATCAATCATATTGAATGacttggtcactctacattatcatttatatagcttgc-ttattcaattagctgatagaattagcaaaccgattttctccccccatctatgttcatgagaaatattgcctgtaattttctgttcttgtaatggccttgttaggttttgctatcaaggttaaatactgagttcatgatttggtttggc--tgtgtccccacccaaacttcacctcgaattgtaatccccaagtccccgtgtgttggggtagggacctggtgggaggtgactggatcctgggggcagtttctcctatgctgttcttgtgatagtgagtgagttatcaggagatctaatggttttgcaagtgtttgacagttcctccttcacacgccctctctcacctgccccca-tgtaagacatgcctgcttccccttccaccattattgtaagtttcctgaggcct-tccaagccatgtggaactgtgactcaatgacacctccttcctttataaattatccagtctcaggtatttctttatagcagtgtgagaatggaataatacagttcataaattaaattgggaaatgtttcctctttatttcatgagagattctataagattagtgttatttcttctttaaatatttgatggagttcagtgaagccatctcttccaggagtcaccaatgtgaaaaagttgtttttttttctgaactagaaaaaaaaaaaagtctgggcatggtggctcaagtcagtaatcccagcactttgggaggcccaggcaggcagatcacttacgggcaggaggttgagaccagcctggctaatatggtgaaaccctgtctctactaaaaatgcaaaaactagcttggcatagtggcaaacacctatagtcctagatattctggaggccgaggcatgagcattgctggaacctgggaggcaaaggttgcagtgagctgagatcacaccattgcactccagcttgggtgagagacagactcTATTAAAAA-----------atatatacat----atatatatatatg------------------------catttatatataattgattacttctacatcaaatatttaaaacaaatcaaattgcttacctctacaataggaaaccccacaatgctattcagttgttatatttcattttgtgtgaaagttgcatttttttcaaggagtttgttcacttcacctaagttgcaaaaatacttaaataaagttgttcataataatccttattatgctttttagtctctgtagtgtctacataag-gcactatttaattccagatattggtagtttgtgttttagctcatgcttcccccatcaatctggctagatgttcatcagattaatactaatgtgttgcatatttcaaagttgctaaaagagtaga-tttttgatgttctcaccataaaacaatggtaagatggttaggtgatggatatgttaattagcttgatttactctttccacaatgtatacataaatcaaaacattacattgtaccccacaaatatacatatacacaattattatttgctaaatataaaataactaaatagaagttcttcatgaatcctttcaaagaatcaaatcttagctccattaacttcctcaattgttttctatttcattgattcctgatattatgtttattactgatttcttactacttactttgaattttaattgttctttttctgtctagttaaaatgaaaacttaaatgattgatGAAGATGTAAATGAAGGTGATAAAGATGAATATCTTCTTTTCT i calJac3.chr5 C 0 I 2152 e canFam3.chr9 39367649 9536 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I a score=1697688.000000 s hg38.chr17_JH159146v1_alt 138597 725 + 278131 aatataatcatttgctgtatattttctactaatccaatgctgtatgtatcccataaatttttaaaatcttttgttttcattatcattcagctcataatatttcttaagctgtattggtatttattatttgatccataggttattagaactgtgttgtttgattttcaaatatttggtgatttttctaagtatctga--------------------------------------------------ttgatttctcatttaattccattgtggtcagataacatattttgttagattttggaatttatggagacaaatttaatggcccagaatatagtctattttggtgagagttccttatgcatttgaaaagaatgtatattctgcaattgtagggggtaacattctgtaaatgtaactgagtaaaattgtttgatactattattcaaatcttctttctccttggtaattttcttatctgtttgttctctcagatcctgacaggggatattaaaatcaccaaatgtgattttggattcatctatttctctcttgacttctgtg----att-ttttgccttatttattttgaagctctgttattgggtcatatttttaaggattataggaccacctgatgaattttccctttttcattatgaaatatcacctt-aaaattatctaatatttaagtgaccaaacttctttcttatcattactatttgcgtggtatgtctttttttcagactacataattcaattttcttgtgcttttatatt s panTro4.chr17 66259110 725 - 82630442 aatataatcatttgctgtatattttctactaatccaatgctgtatgtatcccataaattttaaaaatcttttgttttcattatcattcagctcataatatttcttaagctgtattggtatttattatttgatccataggttattagaactgtgctgtttgattttcaaatatttggtgatttttctaagtatctga--------------------------------------------------ttgatttctcatttaattccattgtggtcagataacatattttgttagattttggaatttatggagacaaatttaatgacccagaatatagtctattttggtgagagttccttatgcatttgaaaagaatgtatattctgcaattgtagggggtaacattctgtaaatgtaactgcgtaaaattgtttgatactattattcaaatcttctttctccttggtaattttcttatctgtttgttctctcagatcctgacaggggatattaaaatcaccaaatgtgattttggattcatctatttctctcttgacttctgtg----att-ttttgccttatttattttgaagctctgttattgggtcatatttttaaggattatattaccacctgatgaattttccctttttcattatgaaatatcacctt-aaaattatctaatatttaagtggccaaacttctttcttatcattactatttgcgtggtatgtctttttttcagactacataattcaattttcttgtgcttttgtatt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24792015 726 - 73212453 aatataatcatttgctgtatattttttactaatccaatgctgtatttttcccataaatttttaaaatcttgtgttttcattatcattcagctcataatatttcttaaactgtattggtatttattatttgatccataggttattataactgtgttgtttgattttcaaatatttggtgatttttctaagtatctga--------------------------------------------------ttgatttctcatttaattccattgtggtcagataacatattttgttagattttggaatttatggagacaaatttaatggcccagaatatagtctattttggtgagagttccttatgcatttgaaaagaatgtatattctgcaattgtagggggtaacattctgtaaatgtaactgggtaaaattgtttgatactattattcaaatcttctttatccttggtaattttcttatctgtttgttctctcagatcttgacaggggatattaaaatcaccaaatgtgattttggattcatctatttctctcttgacttctgtg----att-ttttgccttatttattttgaagctctgttattgggtcatatttttaaggattataggaccacctgatgaattttccctttttcattatgaaatatcaccttaaaaattatctaatatttaaatgaccaaacttctttcttatcattactatttgcatggtatgtctttttttcagactacagaattcaattttcttgtgctcttatatt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48014257 726 - 81552678 aatataatcatttgctgtatattttctactaatccaatgctatatgtatcccataaatttttaaaatcttgtgttctcattatcattcagctcataatatttcttaagctgtactggtatttattatttgatccataggttattagaactgtgttgtttgattttcaaatatttggtgatttttctaagtatctga--------------------------------------------------ttgatttctcatttaattccattgtggtcagttaacatattttgttagattttggaatttatggagacaaatttaatggcccagaatatagtctattttggtgacagttccttatgcatttgaaaagaatgtatattctgcaattgtagggggtaacattctgtaaatgtaactgggtaaaattgtttgatactattattcaaatcttctttatccttagtaattttcttatctgtttgttctctcagatcctgacaggggatattaaaatcaccaaatgtgattttggattcatctatttctctcttgacttctgtg----att-ttttgccttatttattctgaagctctgttattgggtcagatttttatggattataggaccacctgatgaattttccctttttcattatgaaatatcaccttaaaaattatctaatatttaaatgaccaaacttctttcttatcattactatttgcatggtatgtctttttttcagactatagcattcaattttcttgtgcttttgtgtt i nomLeu3.chr19 C 0 I 486 s rheMac3.chr16 53119525 724 + 80904711 aatataatcatttgctgtatattttctactaatccaatgctgtatgtatcttattaatttttaaaatcttgtgtttccattatcattcagctcataatatttcttaagctgtattggtatttattatttgatccataggttattagaactgtgttgtttgattttcaagtatttggt-------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------gataacatgttttcttagattttggaatttatggagacaaatttaatggcccagaatatagtctactttggtgagagttccttgtgcatttgaaaagaatgtatattctgtaattgtaaggggtaacattctgtgaatgtaactgggtaaaattgcttgatactattattcaaatcttctttatccttggtaattttcttgtc----tgttctctcagatactgacaggggatattaaaatcatgaaatgtgattttggatttatctgtttctctcttgacttctggg----atttttttgccttatttattttgaagctctgttattgggtcatatttttatggattatgggaccacctgatgaattttccctttttcattatgaaatatcactttaaaaattatctaatatttaaatgaccaaacttctttcttatcattactatttgcatggtatgtctttttttcagactatagcattcaattttcttgtgcttttatatt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52643649 723 + 80997621 aatataatcatttgctgtatattttctactaatccaatgctgtatgtatcttattaatttttaaaatcttgtgtttccattatcattcagctcataatatttcttaagctgtattggtatttattatttgatccataggttattagaactgtgttgtttgattttcaagtatttggtgatttttctaaatatctta--------------------------------------------------ttgatttctcatttaattccgttgtggtcagataacatattttcttagattttggaatttatggagacaaatttaatggcccagaatatagtctactttggtgagagttccttgtgcatttgaaaagaatgtatattctgtaattgtaaggggtaacattctgtgaatgtaactgggtaaaattgcttgatactattattcaaatcttctttatccttggtaattttcttgtc----tgttctctcagatactgacaggggatattaaaatcatgaaatgtgattttggatttatctgtttctctcttgacttctggg----atttttttgccttatttattttgaagctctgttattgggtcatatttttatggattatgggaccacctgatgaattttccctttttcattatgaaatatcaccttaaaaattatctaatatttaaatgaccaaacttctttcttatcattactatttgcatggtgtgtctttttttcagactatagcgttcaattttcttgtgcttttatatt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47687016 731 + 74645514 aatataatcaTTTGCTGTATATTTTCTACTAATCCAATGCTGTATgtgtcttattaatttttaaaatcttgtgtttccattatcattcagctcataatatttattaagctgtATTGGTATTTATTATTTGATCCATAGGTTATTAGAACTGTGTTGTTTGATTTTCAAGTATTTGGtgatttttctaaatatctta--------------------------------------------------ttgatttctcatttaattccgTTGTGGTCAGataacatattttgttagattttggAATTTATGGAGACAAATTTAATGGCCCAGAATATAGTCTACTTTGGTGAGAGTTCCTtgtgcatttgaaaagaatgtatattctgtaattGTAAGGGGTGACATTCTGTGAATGTAACTGGGTAAAATTGCTTGATACTATTATTCAAATCTTCTTTATCCTTGGTAATTTTCTTGTCTGTTTGTTCTCTCAGATACTGACAGGGGATATTAAAATCATGAAATGTGATTTTGGATTTATCTGTTTCTCTCTTGActtctgggtattttttttttgccttatttattttgaagctctgttattggGTCATATTTTTATGGATTATGGGACCACCTGATgaattttccctttttcattatgaaatatcaCCTTAAAAATTATCTAATATTTAAATGACCAAACTTCTTTCTTATCATTACTATTTGCATGGTATGTCtttttttCAGACTATAGCATTCAATTTTCTTGtgcttttatatt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9954288 727 - 75148670 aatataataatttgctgtatattttctactaatccaatgctgtatgtatcttattaatttttaaaatcttgtgtttccattatcattcagctcataatatttcttaagctgtattggtatttattatttgatccataggttattagaactgtgttgtttgatttttaagtatttggtgatttttctaaatatctta--------------------------------------------------ttgatttctcatttaattctgttgtggtcagataacatattttgttagattttggaatttatggagacaaatttaatggcccagaatatagtctactttggtgagagttccttgtgcatttgaaaagaatgtatattctgtaatcgtaaggggtaacattctgtgaatgtaactgggtaaaattgcttgatactattattcaaatcttctttatccttggtaattttcttgtctgtttgttctctcagatactgacaggggatattaaaatcatgaaatgtgattttggatttatctgtttctctcttgacttctggg----attattttgccttatttattttgaagctctgttattgggtcatatttttatggattatgggaccacctgatgaatgttccctttttcattatgaaatatcaccttaaaaattatctaatatttaaatgaccaaacttctttcttgtcattactatttgcatggtatgtctttttttcagactatagcattcaattttcttgtgcttttatatt i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39367649 9536 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I e calJac3.chr5 112827669 2152 + 159171411 I a score=3015684.000000 s hg38.chr17_JH159146v1_alt 139322 1275 + 278131 taaagtgaatcactttaaaacagcatagtgctgggttttctttttaaatccaatctgacatcctctgactttttattggagtgcttactttatatttaatgtaattattgatatggttggtttaaaatctaccatcttgctatttgttttttatttccatgtgttttttgcttcctttcccttttatttctcatcttattttgggccaatcaaacattctactttattttctatactagctttataagtatatatcttttaatgg-tttttctaaagggtggggtagttctctcaggattatgatatgcatctttacatttttgtactccacttggaattaatactgtagcactttatgtaaaatacgagaaccttaccacagtagggttctttttgcccctttctgttctttgtgctattattgtcaaattgcttacttctacatatagaaaccctacaatgccattgcttttgctttaaatcattgtcttttagaatatcgagaaaaggaaaaagagaaagtctcatattttatccatgtatttaccattttcagtg---tttttttccttcctgaaggtctgagacttcattttgtataattactcttAAAAt-ttttttattgtggcaaaatacaagtaacataaaatttactattttaactatttttaagtgtacaatccagtggtattaagtacattcaaatgttgtgtgggcatcaccaccgtccttctccataactcttttcaccttttaaaactgaaactctgttccctttaaacaactgcccatgaagcccgcccttgtgtcctggcaaccattgttctgcttttcatctctatg----a-tttttttactacttttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtg-ctggcttacttcacttagcacaacatcttcaaggttaattcatgttgtggcatgtgtcagaaagtccttcccttttagggctgaataatattccattgtatggatgtaccatattttgattatccatccgtctatcaatgagcacttgtttgttttcatattttagctattgcaattattgctgctatgaacgcaagtatacaaatgtcttttagcgaccctgctttcaattcttttgggtatatacccagaagtggaagcgcaagatcataaggcaattctacatttaattttttgaggaagtgctatattgtttttcacagtcactgtacaattttaccttcctaccagcaatgcttgagggttcca s panTro4.chr17 66259835 1276 - 82630442 taaagtgaatcacttttaaacagcatagtgctgggttttctttttaaatccaatctgacatcttctggctttttattggagtgcttactttatatttaatgtaattattgatatggttggtttaaaatctaccatcttgctatttgttttttatttccatgtgttttttgcttcctttcccttttatttctcatcttattttgggccaatcaaacattctactttattttctatactagctttataagtatatatcttttaatgg-tttttctaaagggtggggtagttctctcaggattatgatatgcatctttacatttttgtactccacttggaattaatactgtagcactttatgtaaaatacgagaaccttaccacagtagggttctttttgcccctttctgttctttgtgctattattgtcaaattgcttacttctacatatagaaaccctacaatgccattgtttttgctttaaatcattgtcttttagaatattgagaaaaggaaaaagagaaagtctcatattttatccatgtatttaccattttcagtg---tttttttccttcctgaaggtctgagacttcattttgtataattactcttAAAAt-ttttttattgtggcaaaatacaagtaacataaaatttactatcttaactacttttaagtgtacgatccagtggtattaagtacattcaaatgttgtgtgggcatcaccaccgtccttctccataactcttttcaccttttaaaactgaaactctgttcccttcaaacaactgcccatgaagcccgcccttgtgtcctggcaaccattgttctgcttttcatctctatg----a-tttttttactacttttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtgactggcttacttcacttagcacaacatcttcaaggttaattcatgttgtggcatgtgtcagaaagtccttcccttttagggctgaataatattccattgtatggatgtaccatattttgattatccatccgtctatcaatgagcacttgtttgttttcatattttagctattgcgattattgctgctatgaacgcaagtatacaaatgtcttttagcgaccttgctttcaattcttttgggtatatacccagaagtggaagcgcaggatcataaggcaattctacatttaattttttgaggaagtgctatattgtttttcacagtcactgtacaattttaccttcctaccagcaatgcttgagggtccca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24792741 1277 - 73212453 taaagtgaatcacttttaaacagcatggtgctgggttttctttttaaatccaatctgacatcctctgactttttattggagtgcttactttatatttaatataattattgatatggttggtttaaaatctaccatcttgctatttgttttttatttccatgtg--ttttgcttcctttcccttttgtttctcatcttattttgggccaatcaaacattctactttattttctatactagctttataagtatgtatattttaatgg-tttttctaaagggtggggtagttctcccaggattatgatatgcatctttacatttttatactccacttggaattaatactctagcactttatgtaaaatacgagaaccttaccacagtagagttctttttgctcctttctgttctttgtgctattactgtcaaattgcttacttctgcatatagaaaccctacaatgccattgtttttgctttaaataattgtcttttagaatattgagaaagggaaaaagagaaagtctcatattttatccatgtatttgccattttcagtgtt-tttttttccttcctgaaggtctgagacttcattttgtataattactcttAAAAt-ttttttattgtggcaaaatacaagtaacataaaatttactatcttaactatttttaagtgtacaatcctgtggtattaagtacattcaaatgttgtgcaggcatcaccaccgtccttctccataactcttttcacctttcaaaactgaaactctgttccctttaaacaactgcccatgaagcctgcccttgtgtcctggcaaccattgttctgcttttcagctctatg----attttttttactacttttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtgactggcttacttcacttagcacaacgtcttcaaggttaattcatgttgtggcatgtgtcagaaagtccttcccttttagggctgaataatattccattgtatgggtgtaccacattttgattatccatccatctatcaatgagcacttgtttgttttcatattttagctattgggattattgctgctatgaacacaagtatacaaatgtcttttagagaccctgctttcaattcttttgggtatatacccagaagtggaagcgcaggatcataaggcaattctacatttaattttttgagaaactgctatattgtttttcacagtcactgtacaactttaccttcctaccagcaatgcttgagggttcca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48015469 1264 - 81552678 taaaatgaatcacttttaaacagaatagtgttgggttttgttttcaaatccggtctgacatcctctgactttttattggagtgcttactttatatttaatgtaattattgatatggttggtttaaaatctaccatcttgctatttgttttttatttccatgtg-tttttgcttcctttcccttttgtttctcatcttatctggtgc----caaacattctactttattttctatactaactttataagtatatatattttaatggttttttctaaagggtggggtagttctcccaggattatgaaatgcatctttacattattacagtccacttggaattaatactgtagcactctatgtaaaatatgagaaccttaacacagtagagttctttttgctcttttctgttctttatgctattatagtcaaattgcttacttctgtatatagaaaccctacaatgccattgtttttgctttaaataattgtcttttagaatattgagaaaaggaaaaagagaaagtctcatattttatccatgtatttaccattttcaatg-t-tttctttccttcctgaaggtgtgagacttcattttgtataattactcttAAAAt-ttttttattgtggcaaaatacaagtaacataaaatgtactatcttaactatttttaagtgtacaatccagtggtattaagtacattcaaatgctgtgtgggcatcaccaccgtccttctccataacccttttcaccttttaaaactgaaactctgttccctttaaacaactgcccattaa-------cttgtgtcctggcaaacactgttctacttttca--tctatg----a-tttttttactacttttaactacctcatataagtgaaagcatataagtgaatagcatctttttgtgactggcgtacttcacttagaacaatgtcttcaaggttaattcatgttgtggcatgtgtcagaaagtctttcccttttagggctgaataatattccattgtatggatgtaccacattttgattatccatccatctatcaatgaacgcttgtttgttttcatattttagctattgcgattattgctgctatgaacacaagtatacaaatgtcttttagagaccctgctttcaattcttttgggtatatacccagaagtggaagcgcaggatcataaggcaattctacatttaattttttgaggaactgctatattgtttttcacagtcactgtacaattttaccttcttaccagcaatgcttaagagttcca i nomLeu3.chr19 I 486 C 0 s rheMac3.chr16 53120249 1270 + 80904711 taaagcaaatctcttttaaacagcatagtgttgggttttctttttaaatccaatctgacatcctctgac--ttt-ttggagtgcttactttataattaatgtaattattgatacggttggtttaaaatctaccatcttgctatctgttttttatttccgtgtc-tttttgcttcctttcccctttgtttctcatctaattttgggccaatcaaacattctactttattttctatgctagctttataagtatatatcttttaatgg-cttttctaaagggtgggatagttctcccaggattatgatatgcatctttacattattacagtccacttggaattaataatgtagcactttatgtaaaatacgagaaccttaccacagtagagttctttttgctcctttctgttctttgtgctattattgtcaatttgcttacttctgcatgtggaaaccccacgatgccattgcttttgcttgaaataattgtcttttagaatattgagaaaacaaaaaagagaaagtctcatattttatccatgtatttaccattttcagtg-attttttttccttcctgaaggtctgagacttcattttgtatcattACTCTTAAAATGttttttattgtggcaaaatacaagtaacataaaatttactatcttaactgttttaaagtgtacaacccagtggtattaagtacattcaaatgttgtgtgggcatcaccaccatccttctccataactctcttcaccttttaaaactgaaactctgtttcctttaaacaactgtccattaaccccacccttgtgtcctggcaagaactgttctacttttca--tctctg----a-tttttttactacatttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtgactggcttacttcacttagcacaatgtcttcaaggttaattca---tgtggcatgtgtcagaaagtccttcccttttagggctgaataatattccattgtatggatgtaccacattttgattatccatccatctatcaatgaatgcttgtttgttttcatattttagctattgcgattattgctgctatgaacacaagtatacaaatgtcttttagagcccctgctttcaattcttttgggcatatacccagaagtggaagtgcaggatcataaggcaattctacatttaattttttgaggaactgctatattgtttttcatagtcactgtacgattttaccttcctaccagcaatgcttgagggttcca i rheMac3.chr16 C 0 I 8 s macFas5.chr16 52644372 1271 + 80997621 taaagcaaatctcttttaaacagcatagtgttgggttttctttttaaatccaatctgacatcctctgacttttt-ttggagtgcttactttataattaatgtaattattgatacggttggtttaaaatctaccatcttgctatctgttttttatttccatgtc-tttttgcttcctttcccctttgtttctcatctaattttgggccaatcaaacattctactttattttctatgctagctttataagtatatatcttttaatgg-cttttctaaagggtgggatagttctcccaggattatgatatgcatctttacattattacagtccacttggaattaataatgtagcactttatgtaaaatatgagaaccttaccacagtagagttctttttgctcctttctgttctttgtgctattattgtcaaattgcttacttctgcatgtagaaaccccacgatgccattgcttttgcttgaaataattgtcttttagaatattgagaaaacaaaaaagagaaagtctcatattttatccatgtatttaccattttcagtg-a-tttttttccttcctgaaggtctgagacttcattttgtatcattACTCTTAAAATGttttttattgtggcaaaatacaagtaacataaaatttactgtcttaactgttttaaagtgtacaacccagtggtattaagtacattcaaatgttgtgtgggcatcaccaccatccttctccataactctcttcaccttttaaaactgaaactctgtttcctttaaacaactgtccattaaccccacccttgtgtcctggcaagaactgttctacttttca--tctctg----a-tttttttagtacatttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtgactggcttacttcacttagcacaatgtcttcaaggttaattca---tgtggcatgtgtcagaaagtccttcccttttagggctgaataatattccattgtatggatgtaccacattttgattatccatccatctatcaatgaatgcttgtttgttttcatattttagctattgcgattattgctgctatgaacacaagtatacaaatgtcttttagagcccctgctttcaattcttttgggcatatacccagaagtggaagtgcaggatcataaggcaattctacatttaattttttgaggaactgctatattgtttttcatagtcactgtacgattttaccttcctaccagaaatgcttgagggttcca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47687747 1274 + 74645514 taaagcaaatcTCTTTTAAACAGCATAgtgttgggttttctttttaaatccaatCTGACATCCTCTGACTTTTTATTGGAGTGCTTACTTtataattaatgtaattattgatacgGTTGGGTTAAAATCtaccatcttgctatttgttttttatttccatgtc-ttttcgcttcccttcccctttgtttCTCATCTTATTTTGGGCCAATCAAACATTCTACTTTATTTTCTATGCTAGCTTTATAAGTATATATCTTTTAATGG-CTTTTCTAAAGGGTGGGATAGTTCTCCCAGGATTATGATATGCATCTTTACATTATTACAGTCCACTTGGAATTAATAATGTAGCACTTTATGTAAAATACGAGAACCTTACCACAGTAGAGTTCTTTTTGCTCCTTTCTGttctttgtgctattattgtcaAATTGCTTACTTCTGCATGTAGAAACCCCACAATGccattgtttttgctttaaataattgtcttttagaatattgagaaaacaaaaaagagaaagtctcATATTTTATCCATGTATTTACcattttcagtg-a-tttttttccttcctgaaggTCTGAGACTTCATTTTGTATCATTActcttaaaatgctttttattgtggcaaaatacaagtaacataaaatttactatcttaactgTTTTAAAGTGTACAACCCAGTGGTATTAAGTATATTCAAATGTTGTGTGGGCATCACCACCATCCTTCTCCATAACTCTCTTcaccttttaaaactgaaactctgtttcCTTTAAACAACTGCCCATTAACCCCACCCTTGTGTCCTGGCAAGAACTGTTCtacttttca--tctctg----a-tttttttactACATTTAactacctcatataagtgaaagCATATAAATGAATagtatctttttgtgactggcttacttcacttagcacaatgtcttcaaGGTTAATTCACgttgtggcatgtgtcagaaAGTCCTTCccttttagggctgaataatattccattgtatggatgtaccacattttgattatccatccatctatcaatgaatgcttgtttgttttcatattttagctATTGCGATTATTGCTGCTATGGACACAAGTATACAAATGTC-TTtagagaccctgctttcaattcttttgggcatatacccagaagtggaaatGCAGTATTAAAAGGCAattctacatttaattttttgaggaactgctatattgtttttcatagtcACTGTACAATTTTACCTTCCTACCAGCAATGCTTGAGGGttcta i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9955015 1279 - 75148670 taaggcaaatctcttttaaacaacatagtgttgggttttctttttaaatccagtctgacatcctctgactttttattggagtgcttactttataattaatgtaactattggtatggttggtttaaaatctaccctcttgctatttgttttttatttccatatc-ttttcgcttcctttcccctttgtttctcatcttattttgggccagtcaatcattctactttattttctatgctagctttataagtatatatcttttaatgg-cttttctaaagggtgggatggttctcccaggactatgatatgcatctttacattattacagtccacttggaattaataatgtagcactttatgtaaaatatgagacccttaccacagtagagttctttttgctcctttctgttctttgtgctattattgtcaaattgcttacttctgcatgtagaaaccccacaatgccattgtttttgctttaaataattgtcttttagaatattgagaaaacaaaaaagagaaagtctcatattttatcctcgtatttaccattttcagtg-a-tttttttccttcctgaaggtctgagacttcattttgtatcattACTCTTAAAATGttttttattgtggcaaaatacaagtaacataaaatttactatcttaactgttttaaagtgtacaacccagtggtattaagtacattcaaatgttgtgtgggcatcaccaccatccttctccataactcttttcaccttttaaaactgaaactctgttccctttaaacaactgcccattaaccccacccttgtgtcctggcaaccactgttctacttttca--tctctgtgatt-tttttttactacatttaactacctcatataagtgaaagcatataagtgaatagtatctttttgtgattggcttacttcacttagcacaatgtcttcaaggttaattcatgttgtggcgtgtgtcagaaagtccttcccttttagagctgaataatattccattgaatggatgtacctcattttgattatccatccatctatcaatgaatgcttgtttgttttcatattttagctattgcgattattgctgctatgaacacaagtatacaaatgtcttttagagaccctgctttcaattcttttgggcatatacccagaagtggaagtgcaggatcataaggcaattctacctttaattttttgaggaactgctatattgtttttcatagtcactgtacaattttaccttcctaccagcaatgcttgagggttcca i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39367649 9536 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I e calJac3.chr5 112827669 2152 + 159171411 I a score=44100.000000 s hg38.chr17_JH159146v1_alt 140597 65 + 278131 atttctctctctctctctctctatatatatata-----atgtatatattatatattttacatatatatgt s panTro4.chr17 66261111 63 - 82630442 atttctctctctctctctct--atatatatata-----atgtatatattatatattttacatatatatgt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24794018 65 - 73212453 atttctcTCTCTCTCTCTCTCtatatatatata-----atgtatatattatatattttatatatatatgt i ponAbe2.chr17 C 0 I 472 s nomLeu3.chr19 48016733 66 - 81552678 atttctctctctctctctctctctctctctctctctctctctatata-tatata---tatatatatatat i nomLeu3.chr19 C 0 I 2 s macFas5.chr16 52645643 53 + 80997621 gtttctcTCTCTCTCTCTCtatatatatatata-----atatatata----------ggtatatatat-- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47689021 45 + 74645514 --------gtctctctctctctatatatataaa-----atatatata----------ggtatatattt-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9956294 48 - 75148670 ------gtttctcTCTCTCtgtgtgtgtgtgta----tatatatata----------tatatgtgtgt-- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39367649 9536 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I e calJac3.chr5 112827669 2152 + 159171411 I e rheMac3.chr16 53121519 8 + 80904711 I a score=42591.000000 s hg38.chr17_JH159146v1_alt 140662 75 + 278131 gtgtatatatatataaggggttttgttttgttttttgttttttgagacggaatcttgctctgtcacccaggctgt s panTro4.chr17 66261174 75 - 82630442 gtgtatatatatataaggggttttgttttgttttttgttttttgaggcggaatcttgctctgtcacccaggctgt i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48016801 68 - 81552678 atatatatatatata-----ttttgtttgtttgtttg--ttttgagacagagtcttgctctgtcacccaggctgg i nomLeu3.chr19 I 2 C 0 s macFas5.chr16 52645696 58 + 80997621 TTTTTTGTGTG------------TGGtttttttttt---ttttga--ccgagtcttgctctgtcacccaggctgg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47689066 61 + 74645514 ttttttttgtg---------gttttttttttttttt---ttttga--ccgagtcttgctctgtcacccaggctgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9956342 66 - 75148670 gtgtgtgtgtgtata----tatatataCtttttttt---ttttga--ccaagtcttgctctgtcacccaagctgg i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24794083 472 - 73212453 I e canFam3.chr9 39367649 9536 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I e calJac3.chr5 112827669 2152 + 159171411 I e rheMac3.chr16 53121519 8 + 80904711 I a score=135265.000000 s hg38.chr17_JH159146v1_alt 140737 76 + 278131 agtgcagtggtgccatcttggcccagtgcagcctctgcctcctgggttcaagtgattctcttgcttcagcctccca s panTro4.chr17 66261249 76 - 82630442 agtgcagtggtgccatcttggcccagtgcagcctctgcctcctgggttcaagtgagtctcttgcttcagcctccca i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48016869 76 - 81552678 agtacagtggcaccatcttggctcagtgcaacctctgcctcccgggttcaagtgattctcttgctttagcctcctg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53121527 76 + 80904711 agtgcagtggcaccatcttggctcagtgcaacctctgcctcccaggttcaagtgattctctttcttcagcctccga i rheMac3.chr16 I 8 C 0 s macFas5.chr16 52645754 76 + 80997621 agtgcagtggcaccatcttggctcagtgcaacctctgcctcccaggttcaagtgattctctttcttcagcctccga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47689127 76 + 74645514 agtgcagtggcaccatcttggctcagtgcaacctctgcctcccaggttcaagtgattctctttcttcagcctccga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9956408 76 - 75148670 agtgcagtggcgccatcttggctcagtgcaacctctgcctcccaggttcaagtgattctcttgcttcagccttcca i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24794083 472 - 73212453 I e canFam3.chr9 39367649 9536 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I e calJac3.chr5 112827669 2152 + 159171411 I a score=1470587.000000 s hg38.chr17_JH159146v1_alt 140813 625 + 278131 agtagctgggattacaggagcccaccaccacgcccagctaatttttgtatttttagtagagacgggatttcaccatgttggctgggctggtctcaaattcctgacctcaagtgatccacctgccttggcctcccaaagtgctgggattataggcataagccaccacacctggctgttttgttttttgtatttatttatttatttatttatttattttatggcagccatcctaatgggtgggaggtagtatctcattgtagttttgatttgcactttgctaatgattagtga-gtgatgctgagtacctttgcctgtgctgattggctatttgtatatcttctttgaagaaa-gtctattcaagttctctgtccatttctgaactggtttgtttgttttttgtctttgaggtaaaattactcttaaaccaaaaggacttccttattgtttcttatagtgtagatcttcaggcacttaaaaaagaagtcagctttattcacctaaaagtgtttttattttttctttaattttgaaggttgtttttgcagactgtagtgttcacaattttttttcctttaggaccttttaaatgaggtttgattttcctctgacatccattttacctaaa s panTro4.chr17 66261325 623 - 82630442 agtagctgggattacaggagcccaccaccatgcccagctaatttttgtatttttagtagagacgggatttcaccatgttggctgggctggtctcaaactcctgacctcaagtgatccacctgccttggcctcccaaagtgctgggattataggcataagccaccacacctggctgttttgtttttt---tgtagttatttatttatttatttattttatggcagccatcctaatgggtgggaggtagtatctcattgtagttttgatttgcactttgctaatgattagtgatgtgatgctgagtacctttgcctgtgctgattggctatttgtatatcttctttgaagaaa-gtctattcaagttctctgtccatttctgaactggtttgtttgttttttgtcgttgaggtaaaattactcttaaaccaaaaggacttccttagtgtttcttatagtgtagatcttcaggcacttaaaaaagaagtcagctttattcacctaaaagtgtttttattttttctttaattttgaaggttgtttttgcagactgtagtgttcacaattttttttcctttaggaccttttaaatgaggtttgattttcctctgacatctattttacctgaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24794555 615 - 73212453 agtagctgggattacaggagcccaccaccacgcccggctaatttttgtatttttactagagacgggatttcaccatgctggccgggctggtctcaaattcctgacctcgagtgatctgcctgccttggcctcccaaagtgctgggattataggcatgagccatcacacctggccGTTTTGTTTTTT------------Gtatttatttatttattttatggcagccatcctaatgggtgggaggtagtatctcattgtagttttgatttgcactttgctaatgattagtgatgtgatgctgagtacctttgcttgtgctgattggctatttgtatatcttctttgaagaaatgtctattcaagttctctgtccatttctgaactggtttgtttgttttttgtcgttgaggtaaaattactcttaaaccaaaaggacttccttagtgtttcttatagtgtagatcttcaggcacttaaaaaagaagttagctttattcacctaaaagtgtttttattttttctttaattttgaaggttgtttttgcagactgtagtgttcacaattttttttcctttaggaccttttaaatgaggtttgattttcctcttacatccattttatctgaa i ponAbe2.chr17 I 472 C 0 s nomLeu3.chr19 48016945 615 - 81552678 agtagctgggattacaggagcccaccaccacgcccggctaatttttgtatttttagtagagacgggatttcaccatgttggccgggctggtctcaaactcctgacctcaagtgatccgcctgccttggcctcccaaagtgttgggattataggcatgagccaccacacctggccgttttgtttttt-----------tgtatttatttgtttattttatggcagccatcctaatgggtgggaggtagtatctcattgtagttttgatttgcactttgctaatgattagtgatgtgatgccgagtacctttgcctgtgcttattggctatttgtatatcttctttgaagaaatgtctgttcaagttctctgtccatttctgaactggtttgtttgttttttgtcgttgaggtaaaattactcttaaaccaaaaggacttccttagtgtttcttatagtgtagatcttcaggcacttaaaaaagaagccagctttattcacctagaagtgttttta-tttttctttaattttgaaggttgtttttgcagactgtagtgttcacaattttttttcctttaggaccttttaaatgaggtttgattttcctctgacatccattttatctgaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53121603 611 + 80904711 agtagctgggattacaggagcccaccaccatgcctggctaatttttgtatttttagtagagacgggatttccccatgttggccgggctgatctcaaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggattatagacatgagccaccacacctggccgttttgtttttt------------gtat---tttatttattttatggtagccatcctaatgggtgggaggtgatgtctcattgtagttttgatttgcactttgctaatgattagtgatgtgatgctgagtagctttgcctgtgcttattggctatttgtatatcttttttgaagaaatgtctattcaagttctctgtccttttctgaactggtttgtttgttttttgtcgttgaggtaaaattactcttaaaccacaaggacttccttagtgtttcttatagtatagattttcaggcacttaaaaaagaagtcagctttattcacctaaaagtgtttttattttttctttaatattgaaggttgtttttgcagactgtagtgttcacag-tttttttcctttaggaccttataaatgaggtttgattttcctctgacactcattttatctaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52645830 611 + 80997621 agtagctgggattacaggagcccaccaccatgcctggctaatttttgtatttttagtagagacgggatttccccatgttggccgggctgatctcaaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggattatagacatgagccaccacacctggccGTTTTGTttttt------------gtat---tttatttattttatggtagtcatcctaatgggtgggaggtgatgtctcattgtagttttgatttgcactttgctaatgattagtgatgtgatgctgagtagctttgcctgtgcttattggctatttgtatatcttttttgaagaaatgtctattcaagttctctgtccttttctgaactggtttgtttgttttttgtcgttgaggtaaaattactcttaaaccacaaggacttccttagtgtttcttatagtatagattttcaggcacttaaaaaagaagtcagctttattcacctaaaagtgtttttattttttctttaatattgaaggttgtttttgcagactgtagtgttcacag-tttttttcctttaggaccttataaatgaggtttgattttcctctgacactcattttatctaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47689203 607 + 74645514 agtagctgggattacaggagcccaccaccactcctggctaatttttgtatttttagtagagacgggatttccccatgttggccgggctgatctcaaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggattataggcatgagccaccacacctggccgttttgtttttt------------gtat-------tttattttatagtagccatcctaatgggtgggaggtgatgtctcattgtagttttgatttgcactttgctaatgattagtgatgtgatGCTAAGTAGCTTTGcctgtgcttattggctatttgtatatgttttttgaagaaatgtctattcaagttctcTGTGCTTTTCTGaactggtttgtttgttttctgtcgtTGAGGTAAAATTACTCTTAAACCACAAGGACTTCCTTAGTGTTTCTTATAGTATAGATTTTCAGGCACTTAAAAAAGAAGTCAGCTTTATTCAcctaaaagtgtttttattttttctttaatattgaaGGTTGTTTTTGCAGACTGTAGTGTTCacag-tttttttcctttaggaCCTTATAAATGAGGTTTGATTTTCCTCTGACACCCATTTTATCTAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9956484 611 - 75148670 agtagctgggattacaggagcccaccaccatgcccggctaatttttgtatttttagtagagacgggatttccccatgttggccaggctgatctcaaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggattataggcatgagccactacacctggccGTTTTGTttttt------------gtat---tttatttattttatggtagccatcctaatgggtgggaggtgatgtctcattgtagttttgatttgcactttgctgatgattagtgatgtgatgctgagtagctttgcctgtgcttattggctatttgtatatcttttttgaagaaatgtctattcaagttctctgtccttttctgagctggtttgtttggtttttgtcattgaggtaaaattactcttaaaccacaaggacttccttagtgttccttatagtatagatcttcaggcacttaaaaaagaagtcagctttattcatctgaaagtgtttttattttttctttaatattgaaggttgtttttgcagactgtagtgttcacat-tttttttcctttaggaccttataaatgaggtttgattttcctctgacacccattttatgtaaa i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39367649 9536 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I e calJac3.chr5 112827669 2152 + 159171411 I a score=806219.000000 s hg38.chr17_JH159146v1_alt 141438 333 + 278131 aagaagtcagacatccattttttc-tttgctgccttctatttgatt---tgttttttttt--cttaa--------------------------ttggtattcagcagtttgactatgatatgtgtaggtg----------gtgtgtgtgtgtgtgtgtgt------attgcaattatcctgctaagtgtttattgagactcttgaatatatgggttaataaa--atgtcaccaaatttcgaaaatttttgcttt-tattccctcccaaatttttatttccta--ttctttaactcctctc-attctgagactccaatttcatcctcatttcaccacttggtactttcccacaggcttcttagtttcttcaa-ttt--ctttttcaa-tcct s panTro4.chr17 66261948 337 - 82630442 aagaagtcagacatccattttttc-tttgctgccttctatttgatt---tgttttttttt--cttaa--------------------------ttggtattcagcagtttgactatgatatgtgtaggtg----------gtgtgtgtgtgtgtgtgtgt--gtgtattgcaattatcctgctaagagtttattgagattcttgaatatatgggttaataaa--atgtcaccaaatttcgaaaatttttgcttt-tattccctcccaaatttttatttccta--ttctttaactcctctc-attctgagactccaatttcatcctcgtttcaccacttggtactttcccacaggcttcttggtttcttcaa-ttt--ctttttcca-tcct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24795170 330 - 73212453 gagaagtcagacatccactttttc-tttgctgccttctatttaatt---tgttttttttttccttaa--------------------------ttgttattcagcagtttgactatgatatgtgtaggtg----------gtgtgtgtgcgtgt------------attgcaattatcctgctaagagtttgttgagattcttgaatatgtgagttaataaaatatgtcaccaaatttcaaaaatttttgcttt-tattccctcccaaatttttatttcctg--ttctttaactcctctc-attctgagactccagtttcatcctcgtttcaccacttgatactttcccacaggcttcttagtttcttcaa-ttt---tttttcaa-tcct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48017560 335 - 81552678 aagaagtcagacatccacattttc-tttgctgccttctatttga--------tttttttt--cttaa--------------------------ttgttattcagcagtttgactatgatatgtgtaggtg----------gtgtgtgtgtgtgtgtgtgtgtgtgtattgcaattatcctgctaagagtttgttgagattcttgaatatgtgggttaataaaatatgtcaccaaattttgaaaatttttgcttt-tattcgctcccaaatttttatttccta--ttctttaactcctctc-attttgagactccactttcatcctcgtttcaccacttgataccttcccacagtcttcttagtttcttcca-ttt---tttttcaa-tcct i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53122214 348 + 80904711 gagaagtcagacattcattttttc-tttgctgccttctatttgatttgtttttttttttt--cttaa--------------------------ctgttattcagcagtttgactatgatatgtgtaggtg------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgcaattatcctgctaagagtttgttgagattcttgaatatgtgggttaataaaatatgtcatcaaattttgaaaatttttgcttt-cattccctcccaaatttttatttccta--ttctttaactcctgtcaattctgatactccaatttcatccttgtttcaccacttgatactttcccacaggcttcttagcttcttcaa-ttt---tttttcaa-tcct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52646441 353 + 80997621 gagaagtcagacattcattttttc-tttgctgccttctatttgatttg-ttttttttttt--cttaa--------------------------ctgttattcagcagtttgactatgatatgtgtagatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgcaattatcctgctaagagtttgttgagattcttgaatatgtgggttaataaaatatgtcatcaaattttgaaaatttttgcttt-cattccctcccaaatttttatttccta--ttctttaactcctgtcaattctgatactccaatttcatccttgtttcaccacttgatactttcccacaggcttcttagcttcttcaa-ttt---tttttcaa-tcct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47689810 338 + 74645514 GAGAAGTCagacattcattttttcttttgctgccttctatttgagt---ttttttttttc--tttaa--------------------------ctgttaTTCAGCAGTTTGACTGTGATAtgtgtaggtg--------------gtgtgtgtgtgtgtgtgtgtgtattgcaaTTATCCTGCTAAGAGTTTGTTGAGATTCTTGAATATGTGGGTTAATAAAATATGTcatcaaattttgaaaatttttgcttt-cattccctcccaaatttttatttccta--ttctttAACTCCTGTCAATTCTGAGACTCCAATTTCATCCTTGTTTCACCACTTGATACTTTCCCACAGGCTTCTTagcttcttcaa-ttt---tttttcaa-tcct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9957095 239 - 75148670 gagaagtcagacattcattttttc-tttgctgccttctatttgatt------------------------------------------------------------------------------------------------------------------------------------------------tgttgagattcttgaatatgtgggttaataaaatatgtcatcaaattttgaaaatttttgcttt-cattccctcccaaatttttatttccta--ttctttaactcctgtcaattctgagactccagtttcatccttgtttcaccacttgatactttcccacaggcttcttagtttcttcaatttt---tttttcaa-tcat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112829821 367 + 159171411 agggagtcagacattccctttttc-tttgctgccttctacttgatt---tgtttgttttt--cttaaatttttaaaagatatcctactgatctttgttattcagcagttggactatgatatgtctagggg-----------tgtgtgtgtgtgtatgtgtaatta-gtagcaattatcctgctaagagtttgttgagattcttgaa----tgggttagttaaatatgtcatcaaatttggaaaatgtttgccttgtatttcctcccaaatgtttatttcctattttttttaactcctctc-attctgagtctccagttccatgtttgtttcaccacttgatagtttcccacaggattcttaggttctttaa-tttttttttttcaattctt i calJac3.chr5 I 2152 C 0 e canFam3.chr9 39367649 9536 - 61074082 I e mm10.chr11 99544612 5381 + 122082543 I a score=2674104.000000 s hg38.chr17_JH159146v1_alt 141771 890 + 278131 tttttctACCCTGGCTAGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCACTCAGCTTCTAATCACCCAGCAGCCACTCTTTGCTATGCCTGATGGAATTTCAGCCAGCGTATTTGCAACTGTGCCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTTACTTACCTACGTATATCTTCTTCCTCTCCAGAA---------------TAACTTTCCAAACCC--CATTTAGATATAGCTACTCGTGTTGCAAACATGACCTGTGTAGAGCAAGAAGAACAGAGTATTTCCATCTTGAACTCTCTTCTCCTTCTCGGCTCCTAGGCTCAATTGGTGACATAACTCCACTGTCTAGTCTTTCTTTGATATTTTCTTTTCCTCCATATCCCTTTGATGACTAGCTGCAGTCAATTCCTCTTTGACTATGTCTTTCCCACTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATACTGCTGGTAGAACACATC-----TTTTTTTATTATAACACAGCAACTGGCATTC----GATAATTATTAACCGTAGGAAGAAACAAATGGATGTTGTGTTTGTATTTGCTTCACCTGCCAGATGGTTAGCTTATTTTCAGCAGAGACAATAAaacacaggacacacaa-tagacatttaataaatcttagttgaataaataaTGACATTATTATA----------TTTTTTTCATAAATAG---ATCATGTCACCTGGATTAGTTTATATATTTTGTCATATTTGGTGTTTGGGTAATGTTCAGTATTTCTCAACCTGTCTGAAACCA---TTTTTTGGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTACATGCAAGGATGTTTAA s panTro4.chr17 66262285 890 - 82630442 tttttctACCCTGGCTAGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTTGTATCTCCACTCAGCTTCTAATCACCCAGCAGCCACTCTTTGCTATGCCTGATGGAATTTCAGCCAGCGTATTTGCAACTGTGCCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTTACTTACCTACGTATATCTTCTTCCTCTCCAGAA---------------TCACTTTCCAAACCC--CATTTAGATATAGCTACTCGTGTTGCAAACATGACCTGTGTAGAGCAAGAAGAACAGAGTATTTCCATCTTGAACTCTCTTCTCCTTCTCGGCTCCTAGGCTCAATTGGTGACATAACTCCACTGTCTAGTCTTTCTTTGATATTTTCTTTTCCTCCATATCCCTTTGATGACTAGCTGCAGTCAATTCCTCTTTGACTATGTCTTTCCCACTTTACCC---------CCATGACAACAGTCTTCATCATTCTCAATTTTATGATCCCACAGCACTTTACTAATACTGCTGGTAGAACACATC-----TTTTTTTATTATAACACAGCAACTGGCATTC----GATAATTATTAACCGTAGGAAGAAACAAATGGATGTTGTGTTTGTATTTGCTTCACCTGCCAGATGGTTAGCTTATCTTCAGCAGGGACAATAAAACACAGGACACACAA-CAGACATTTAATAAATCTGAGTTGAATAAATAATGACATTATTATA----------TTTTTTTCATAAATAG---ATCATGTCACCTGGATTAGTTTATATATTTTGTCATATTTGGTGTTTGGGTAATGTTCAGTATTTCTCAACCTGTCTGAAACCA---TTTTTTGGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTACGTGCAAGGATGTTTAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24795500 897 - 73212453 tttttctaccctggctaggct-ggaACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTCAGCTTCTAATCACCCAGCAGCCACTCTTTGCTATGCCTGATGAAATTTCAGCCAACGTGTATGCAACTGCGCCTTCTATAAGTAC-TG--AGAACTTTTACACAGTCTTGTTTACTTACCTACGTATATCTTCTTCTTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTTAGATATAGCTACTCGTGTTGCAAACATGACATGTCTAGAGCAAGAAGAACAGAGCATTTCCATCTTGAATTCTCTCCTCTTTCTTGGCTCCTAGGCTCAATTGGTGACATAACTCCACTGTCTAGTCTTTCTTTGATATTTTATTTTCCTCCGTATCCCTTTGATGACTAGCTGCAGTCAATTCCTCTTTGACTATGACTTTCCCACTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATGCTGCTGGTAGAACACATCA-TTTTTTTTTTATTATAACACAGCAATTGGAATTT----GATAATTATTAACTGTAGGAAGAAACAAATGGCTGTTGTGTTTGTATTTGCTTCACCTGCCTGATGGTTAGCTTATTTTCAGCAGAGACAATAAAACATAGGACACACAA-TAGACATTTAATAAATCTTAGTTGAATAAATAATGACACTATTATATTA------TTTTTTTTCATAAATAG---ATAATGTCATCTGGATTAGTTTATATATTTTGTCATATTTGGTGTTTGGGTAATGTTCAGTATTTCTCAACCTGTCTGAAACCA---TTTTTTGGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTATATGCAAGAATGTTTAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48017895 894 - 81552678 tttttcta-cctgGCTAGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTCAGCTTCTAATCACCCAGCAGCCACTCTTTGCTATGCCTGATGGAATTTCAGCGAGCATATTTGCAACTGCACCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTTACTTACCTACATATATCTTCTTCCTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTTAGATATAGCTACTCGTGTTGCAAACATGACATGTGTAGAGCAAGAAGAACAGAATATTTCCATCTTGAATTCTCTCCTCCTTCTCGGCTCCTAGGCTCAATTGGTCACATAACTCCACTGTCTAGTCTGTCTTTGATATTTTCTTTTCCTCCATATCCCTTTGATGACTAGTTGCAGTCAATTCCTCTTTGACTATATCTTTCCCACTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCGATTTTATGATCCCACAGCACTTCACTAATACTGCTGGTAGAACACATC-----TTTTTTTATTATAACACAGCAATTGGCATTTGATAGATAATTATTAACTGTAAGAAGAAACAAATGGATGTTGTGTTTGTATTTGCTTCACCTGCCAGATGGTTAGCTTATTTTCAGCAGAGACAATAAaacacaggacacacaa-taggcatttaataaatcttagttgaataaaCAATGACATTATTACA---------ATTTTTTTCATAAATAG---ATCATGTCATCAGGATTAGTTTATATATTTTGTCATATCTGGTGTCTGGGTAATGTTCAGTATTTCTCAACCTGTCTGAAACCA---TTTTTTGGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCTGAGGTACTAGACCATCTTATATGCAAGGATGTTTAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53122562 822 + 80904711 tttttctactctgG-TAGGCT-GGGACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTCAGCTTCTAACCACCCAGCAGCCACTCTTTGCTGTGCCTGATGGAATTTCAGCCAGCGTATATGCAACTGCACCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTCACTTACCTACATATATCTTCTTCCTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTTAGATACAGCTACTCGTGTTGCAAATGTGACATGTCTAGAGCAAGAAGAACAGAGTATTTCCATCTTGAATTCTCTCCTCCTTCTCTCCTTCTAG----------------------------------------------------------------------------GTTGCAGTCAATTCCTCTTTGACCATGTCTTTCCCATTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATACTCCTGGTAGAACACATCATT--TTTTTTTATTGTAACACAGCAATTGACATTTGACAAATAATTATTAACTGTAGGAAGAAACAAATGGATGTTGTGTTTGTATTTGTTTCACCTGCCAGATGGTTAGCTTATTTTCAGCAAGGATAATAAaacacccgacacacca-tgggcatttaataaatcttagttgaataaataaTGACATTATTATA----------ATTTTTTCATAAATAG---CTCATGTCATATGGATTAGTTTATGTATTTTGTCATATTTGGTGTTTGGGTAATGTTCAATATTTCTCAACCTGTCTGAAACCA-TTTTTTTTTGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTATATGCAAGGACGTTTAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52646794 821 + 80997621 tttttctactctgG-TAGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTCAGCTTCTAACCACCCAGCAGCCACTCTTTGCTGTGCCTGATGGAATTTCAGCCAGCGTATATGCAACTGCACCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTCACTTACCTACATATATCTTCTTCCTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTTAGATACAGCTACTCGTGTTGCAAATGTGACATGTCTAGAGCAAGAAGAACAGAGTATTTCCATCTTGAATTCTCTCCTCCTTCTCTCCTTCTAG----------------------------------------------------------------------------GTTGCAGTCAATTCCTCTTTGACCATGTCTTTCCCATTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATACTCCTGGTAGAACACATCA-T--TTTTTTAATTGTAACACAGCAATTGACATTTGACAAATAATTATTAACTGTAGGAAGAAACAAATGGATGTTGTGTTTGTATTTGTTTCACCTGCCAGATGGTTAGCTTATTTTCAGCAAGGATAATAAaacacctgacacacca-tgggcatttaataaatcttagttgaataaataaTGACATTATTATA----------ATTTTTTCATAAATAG---CTCATGTCATATGGATTAGTTTATGTATTTTGTCATATTTGGTGTTTGGGTAATGTTCAATATTTCTCAACCTGTCTGAAACCA-TTTTTTTTTGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTATATGCAAGGACGTTTAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47690148 820 + 74645514 TTTTTCTACCCTGA-TAGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTGTTATCTCCATTCAGCTTCTAACCACCCAGCAGCCACTCTTTGCTGTGCCTGATGGAATTTCAGCCAGCGTATATGCAACTGTGCCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTCACTTACCTACATATATCTTCTTCCTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTTAGATACAGCTACTCGTGCTGCAAATGTGACATGTCTAGAGCAAGAAGAACAGAGTATTTCCATCTTGaattctctcctccttctctccttctag----------------------------------------------------------------------------GTTGCAGTCAATTCCTCTTTGACCATATCTTTCCCATTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATACTCCTGGTAGAAcacatca-t--tttttttattataacacAGCAATTGACATTTGACAAATAATTATTAACTGTAGGAAGAAACAAATGGATGttgtgtttgtatttgtttcaCCTGCCAGATGGTTAGCTTATTTTCAGCAAGGATAATAAAACACAGGACACACCA-TGGGCATTTAATAAATCTTAGTTGAATAAATAAtgacattattata----------attttttcataaatag---ctcatGTCATATGGATTAGTTTATGTATTTTGTCATATTTGGTGTTTGGGTAATGTTCAATATTTCTCAACCTgtctgaaacca--ttttttttggAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTATATGCAAGGAcgtttaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9957334 819 - 75148670 tttttctACCCTGG-TGGGCT-GGAACCTCAAAGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTCAGCTTCTAACCACCCAGCAGCCACTCTTTGCTGTGCCTGATGGAATTTCAGCCAGCGTATATGCAACTGCACCTTCTGTAAGTACTTG--AGAACTTTTACACAGTCTTCTTCACTTACCTATATATATCTTCTTCCTCTCCAGAA---------------TAGCTTTCCAAACTC--CATTT--ATACAGCTACTCGTGTTGCAAATGTGACATGTCTAGAGCAAGAAGAACAGAGTATTTCCATCTTGAATTCTCTCCTCCTTGTCTACTCCTAG----------------------------------------------------------------------------GTTGCAGTCAATTCCTCTTTGACCATGTCTTTCCCATTTTACCC---------CCATGACAACAGTCTTCATTGTTCTCAATTTTATGATCCCACAGCACTTTACTAATACTCCTGGTAGAACACATCA----TTTTTTTATTATAACACAGCAATTGACATTTGACAAATAATTATTAACTGTAGGAAGAAACAAATGGATGTTATGTTTGTATTTGTTTCACCTGCCAGATGGTTAGCTTATTTTCAGCAAGGATGATAAAACACAGGACACACCA-TGGGCATTTAATAAATCTTAGTTGAATAAATAATGACATTATTATA----------ATTTTTTCATAAATAG---CTCATGTCATATGGATTAGTTTATGTATTTTGTCATATTTGGTGTTTGGGTAATGTTCAGTATTTCTCAACCTGTCTGAAACCATTTTTTTTTTGGAAGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGACCATCTTATATGCAAGGACGTTTAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112830188 875 + 159171411 tttttctACCCTGGCTAGGCA-GGAACCTCAATGTCTGTTAATAGTGAATGACCTCTGGTATCTCCATTT-GCTTCTAATCACCCAGCAGCCACTCTTTGCTATGCTTGATGGAATTTCAGCCAGCGTATATGCAACTGCACTTTCTGCAAGTACTTG--AGAACTTTAA------------------------TATATCTTCTTCTTCTCCAGAA---------------TAGCTTTCCAAACTCCTCACTTAGATACAGCTACTCGTGTCTCAAACTTGACGTGCCTAGAGCAAGCAAAACAGAGTATTTCCATCTCGAATTCTCTCCTCCTTCTTTGCTCCTATGCTTAATTGGTGACATAACTCCATCATCTAGTCTTTCTTTAACATTTTCTTTTCCTCCATAGCCCTTTGATGACTAGCTGCAGTCAATTCCTCCTTGACAGTGTCTTTCCCACTTTACCC---------CCATGACAACCGTCTTTAGTGTTCTCAATTTTATGATGTTACAGGACTTGGCTAATACTGCTGGTAGAACACATCA-T--ATTTTTCATTACAACATAGCAATGGGCATTGGATAAATAATTATTAACTGTAGGAAGAAACAATCGGATGCTGTGTTTGTATTTGCCTCACTTGCCAGATGGTTAGCTTATTTTTGGCAGG--CAATAAAACACA-GACATACAA-TAGACATTTAATAAATCTTAGTTGaataaataattacattattatattac-----aatttctttataaataG---ATAATGTCATCTGGATTTGTTTATATATTTTGTCATAGTTGGTGTTTGGGTAATGTTCAATATTTCTCAACCTGTCTGAAACCA---TTTTTTGGGAGGACAAGTCAGGAAAAGTCTACTTTCAAATATGCCGATGTACTAGGCCATCTTATATGCAAGGACATTTAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39377185 897 - 61074082 TTTGTCATCTCTGAATGTGCTGGGAACTTCAGTATCTGTTCATATTGGTTGACTTCTGGTATCTCCATTCAGCTCTTTATCCCCCAGCAGCCAGTC--TGTTA-GCCTCATGGAATTTTATCCTGCATA----CAACCCAGCCCTTTGCAAGTATTTGATAGAACTTTTACACAGACTTGCACACCTTCCTTCATACGTCTTCTTCCTCTCTAGAACACTTGTGCAAATTCCAGCTCTCTAAATTCC-CATTTAGATACGG--AGTTGTGCCTC--------CATATTCAGAGC----AGAATACATTATGTCTTTTTAAAATTCTCTCTTCCTTCTCTGCTCCTATGCTTACTTAGTGACATAACCCCACTGTCTAATCTCTCTTTGACACCTTCTTCTCTTTTAAATCTTTTTGGCCACCAGCTCTAGTGG-----TCTTTGACTCTCTTTTTTGCTCTTTCTCCTGCTTATCACCATGGCAACAATCTTAATTGTTCTCAATTTTATGGTATCACAGCACTTTACTAATACTACTAGTAGAACATTTAT----ATTTTTTGTTATAATACAGTACTCAGCATTC-AAAAATAATTGTTAATTGTACATAGGAATGAATGAGTATTATGTTTCTATCTACATGACCTGCTAGACAGTCTGCTCATTTTGAGCAGTGATAATAAAATATAGGGCACATAATTAGATATTTAATAAAAGTTTACTGAATGAATTATAACATTATGAAGTTACTATTTTTTTTTTACATAAACAACACATCAGGTCA-CTGGA--AGTTGATATGTTATATC----------TTCATATCATGTTCAGTGCTTCCCAATTTACCTTAAACCA---CTTTTTGGTAGGACAAGTTAGGGAAAGTATACTTGTGACCGTGCTGATATAATGGACCATCTGATATGCAAGGCCATTTAG i canFam3.chr9 I 9536 C 0 e mm10.chr11 99544612 5381 + 122082543 I a score=5629563.000000 s hg38.chr17_JH159146v1_alt 142661 1449 + 278131 TTTTCTTAAAACAGCAAGAACAGCAAAATTAAGAAATTTTTGTCCATACTGCC--------ACCATTTTCAGTTTCACTAATGTTTCCAGTTTTTCTTTAAATGCCAATGTTCAGAGTTAAGA-------------AACGCATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACACTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAAGAACTTCCTTAATTTTCAGAAAGATACCACCCAAGACTGAAAACAGAATTCCCAAACCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCAGGAAGCTATAGGCATCCACTGATTCAAACTGCA----GTTGGTTA-------TAGCTGAATGGTCATTGAAAGTTTCTTGGTCTCTTTTTTTT----TGCAGGGGGTGATTGTGGTAGTACCATCCTT--GTTCCAATTTCTAAAGCAGAGTACATTAGTTGTAGGTACTGAGATAGGTGAATGCTAAAGCTTCTATGTTGACTTTTTCAATCTCAGGCACTGAGCAAAGTAG-CCATCCAT---TAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCAGAGGAGCAGATGGTGGTGGCAGGCCCGGTGGGGACACTGCAGCCTCGAGAGGCACAGCAATCCATGGCTATTAGAGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGATAAGGCTTCTGAGGTGTGAATATCTCTCCTTTCTCTGGGGCTCTTATGTACCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-TC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCGTTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAT---TGCATGACAGTGAGTCTGT--AATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAATTTGTCTGATAAAGTATTCTTGTTTTAAAGAGTTGAACTTAATT----TT----ACTTTCTTTTAGCTTTGAGGCTTTTGAAGATCA--------------AAATTAC-ATTAACA--------------------------TGAAGA---------AATATGCCATTAAGAAATATGGAAAAACTT-TAAAAAACGCTTATTAttctagt-------------------tttttactacaaaat-------------------------------------------------------------atttt-----gtataca----------------ttgtt s panTro4.chr17 66263175 1448 - 82630442 TTTTCTTAAAACAGCAAGAACAGCAAAATTAAGAAATTTTTGTCCATACTGCC--------ACCATTTTCAGTTTCACTAATGTTTCCAGTTTTTCTTTAAATGCCAATGTTCAGAGTTAAGA-------------AACGCATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACACTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGATACCACCCAAGACTGAAAACAGAATTCCCAAACCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCAGGAAGCTATAGGCATCCACTGATTCAAACTGCA----GTTGGTTA-------TAGCTGAATGGTCATTGAAAGTTTCTTGGTCTCTTTTTTTT----TGCAGGGG-TGATTGTGGTAGTACCATCCTT--GTTCCAATTTCTAAAGCAGAGTACATTAGTTGTAGGTACTGAGATAGGTGAACGCTAAAGCTTCTATGTTGACTTTTTCAATCTCAGGCACTGAGCGAAGTAG-CCATCCAT---TAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCAGAGGAGCAGATGGTGGTGGCAGGCCCGGTGGGGACACTGCAGCCTCGAGAGGCACAACAATCCATGGCTATCGGAGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGATAAGGCTTCTGAGGTGTGAATATCTCTCCTTTCTCTGGGGCTCTTATATACCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-TC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAT---TGCATGACAGTGAGTCTGT--AATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAATTTGTCTGATAAAGTATTCTTGTTTTAAAGAGTTGAACTTAATT----TT----ACTTTCTTTTAGCTTTGAGGCTTTTGAAGATCA--------------AAATTAC-ATTAACA--------------------------TGAAGA---------AATATGCCATTGAGAAATATGGAAAAACTT-TTAAAAACGCTTATTAttctagt-------------------tttttactataaaat-------------------------------------------------------------atttt-----gtgtaca----------------ttgtt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24796397 1446 - 73212453 TTTTCTTAAAACAGCAAGAACAACAAAATTAAGAAATTTTTGTCCATACTGCC--------ACCATTTTCAGTTTCACTAATGTTCCCAGTTTTTCTTTAAATGCCAATGTTCAGAGTTAAGA-------------AACACATTTAATGAATGAACAGAAATAAACAGGAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGATACCACCCAAGACTGAAAACAGAATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCAGGAAGCTGTAGGCATCCACCGACTCAAACTGCA----GTTGGTTA-------TAGCTGAATGGTCATTCAAAGTTTCCTGGTCTC-TTTTTTT----TGCAGGGGGTGGTTGTGATAGTACCATCCTT--GTTCCAATTTCTAAAGCAGAGTACATTAGTTGTAGGTACTGAGATAGGTGAACGCTAAAGCTTCTATGTTGACTTTTTCAGTCTCAGGCACTGAGCAAAGTAG-CCATCCAT---TAGCAGCCTTTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGACCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCAAAGGAGCAGATGGTGGTGGCAGGCCCGGTGGGGACACTGCAGCTGTGAGAGGCACAGCAATCCATGGCTATCGGAGTCTG--TGGTATTTATGGGTTTGATTGAAAAGATGGATAAGGCTTCTGAGGTGTGAATATCTCTCCTTTCTATGGGGCTCTTATATACCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTAT-TTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-TC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAT---TGCATGACAGTGAGTCTGT--AATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTCTACCAATTTGTCTGATAAAGTATTCTTGTTTTAAAGAGTTGAACTTAATT----TT----ACTTTCTTTTAGCTTTGAGGCTTTTGAAGATCA--------------AAATTAC-ATTAACA--------------------------TGAAGA---------AATATGCCATTGAGAAATATGGAAAACTTT-T--AAAACACTTATTATTCTAGT-------------------TTTTTACTATAAAAT-------------------------------------------------------------ATCTT-----GTATACAT---------------TTGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48018789 1449 - 81552678 TTTTCTTAAAACAGCAAGAACAGCAAAATTAAGAAATATTTGTCCATACTGCC--------ACCATTTTCAGTTTCACTAATATTCCCAGTTTTTCTTAAAATGCCAATGTTCAGAGTTAAGA-------------TACACATTTAACGAATGAACAGAAATAAACATAAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAATAACTTCCTTAATTTCCAGAAAGATACCACCCAAGACTGAAAACAGAATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCAAATAGCTTCAGGAAGCTATAGGCATCCACCGATTCAAACTGCA----GTTGGTTA-------TAGCTGAATGGTCATTGAAAGTTTCTTGGTCTCTATTTTTT----TGCAGGGGGTGATTGTGATAGTACCATCCTT--GTTCCAATTTCTAAAGCAGAGTACATTAGTTGTAGGTACTGAGATAGGTGAACGCTAAAGCTTCTATGTTGACTCTTTCAGTCTCAGGCACTGAGCAAAGTAG-CCATCCAT---TAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGAAGGAGCAGAGGGTGGTGGCTGGTCCGGTGGGGACACTGCAGCCGCGAGAGGCACAGCAATCCATGGCTATCGGAGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGATAAGGCTTCTGAGGTGTGAATATCTCTCCTTTCTCTGGGGCTCTTATATACCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-TC-TGTAAAGAGTCCCCATTTTTCTAATTAACTTTTATTTGAGTTCATTGCTAAACCTGAACTGATTACCCTTGCTATTTGTCATTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAC---TGCATGACAGTGAGTCTGT--AATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAATTTGTCTGATAAAGTATTCTTGTTTTAAAGAGTTGAACTTAGTT----TT----ACTTTACTTTAGCTTTGAGGCTTTTGAAGATCA--------------AAATTAC-ATTAATG--------------------------TGGAGA---------AATATGCCATTGAGAAATATGGAAAAACTT-TAAAAAACACTTATTAttctagt-------------------tttttactataaaa--------------------------------------------------------------atttt-----gtatacat---------------ttgtt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53123384 1433 + 80904711 TTTTCTTAA---------AACAGCAAAATT---AAATTTTTGTCCATACTGCC--------ACCATTTTTAGTTTCACTAAGGTTCCCAGTTTTTCTTAAAATGCCAATGTTCAGAGTTAAGA-------------AACACATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAGTTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGATAGCACCCAAGACTGGAAAC--AATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGGACAGCTTCGGGAAGCTGTAGGCATCCACCTAC---AGCTGCA----GTTGGTTA-------TAGCTGAATGGTCATTGAAAGTTTCTTGGTCTCTTTTTATT----TGCAAGGGGTGATTGTGATAGCAACATCCTT--GTTCCAATTTCTAAAACAGAGCACATTAGTTGTAGGTACTGAGATACGTGAACGCTAAAGCTTCTATGCTGACTCTTTCAACCTCAGGCACTGAGCAAAGTAG-CCATCCAT---CAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAATTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCAGTGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGACAAGTCTTCTGAGGCGTGAATATCTCTCCTTTCTCTGGGGCTCTTATATATCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-AC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAC---TGCATGACAGTGAGTCTGTACAATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAATTTGTCTGATAAAGTATCCTTGTTTTAAAGAGTTGAACTTAATT----TT----ACTTTCTTTTAGCTTTGAGGA-TTTGAAGATCA--------------AAATTAC-ATTAATA--------------------------TGGAGA---------AATATGCTGTTGAGAAATATGGAAAAACTT-TATAAAACACTTATTATTGTAGT-------------------TTTTTACTACAAAT--------------------------------------------------------------ATTTT-----GTATACAT---------------TTGTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52647615 1436 + 80997621 TTTTCTTAA---------AACAGCAAAATT---AAATTTTTGTCCATACTGCC--------ACCATTTTTAGTTTCACTAAGGTTCCCAGTTTTTCTTAAAATGCCAATGTTCAGAGTTAAGA-------------AACACATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAGTTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGATAGCACCCAAGACTGGAAAC--AATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCGGGAAGCTGTAGGCATCCACCAATTCAGACTGCA----GTTGGTTA-------TAGCTGAATGGTCATTGAAAGTTTCTTGGTCTCTTTTTATT----TGCAAGGGGTGATTGTGATAGCAACATCCTT--GTTCCAATTTCTAAAACAGAGCACATTAGTTGTAGGTACTGAGATACGTGAACGCTAAAGCTTCTATGCTGACTCTTTCAACCTCAGGCACTGAGCAAAGTAG-CCATCCAT---CAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAATTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCAGTGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGACGAGTCTTCTGAGGCATGAATATCTCTCCTTTCTCTGGGGCTCTTATATATCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-AC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAACTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTACTGGGGAATAC---TGCATGACAGTGAGTCTGTACAATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAATTTGTCTGATAAAGTATCCTTGTTTTAAAGAGTTGAACTTAATT----TT----ACTTTCTTTTAGCTTTGAGGA-TTTGAAGATCA--------------AAATTAC-ATTAATA--------------------------TGGAGA---------AATATGCTGTTGAGAAATATGGAAAAACTT-TATAAAACACTTATTATTGTAGT-------------------TTTTTACTACAAAT--------------------------------------------------------------ATTTT-----GTATACAT---------------TTGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47690968 1447 + 74645514 ttttcttaaaacagcaagaacagcaaaatt---aaatttttgtccATACTGCC--------ACCATTTTTAGTTTCACTAAGGTTCCCAGTTTTTCTTAAAATGCCAATGTTCAGAGTTAAGA-------------AACACATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGACAGCACCCAAGACTGGAAACAGAATTCCCAAAGCA-CCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCGGGAAGCTGTAGGCATCCACCAATTCAGACTGCA----GTTGGTTA-------TGGCTGAATGGTCATTGAAAGTTTCTTGGTCTCATTTTATT----TGCAAGGGGTGATTGTGATAGCAACATCCTT--GTTCCAATTTCTAAAACAGAGCACATTAGTTGTAGGTACTGAGATACGTGAACGCTAAAGCTTCTGTGCTGACTCTTTCAACCTCAGGCACTGAGCAAAGTAG-CCATCCAT---CAgcagcttcttgggaggcaggG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAAGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCAGCGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGACAAGTCTTCTGAGGTGTGAATATCTCTCCTTTCTCTGGGGCTCTTATATATCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGCACCCattattctttaatttgtttGACATTTAGAC-AC-TGTAAAGAGTCCCCATTTTCctaattaacttttatttgagTTCATTGCTAAATCTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAATAC---TGCATGACAGTGAGTCTGTACAATATGTGGGCCTGCTCTCCAgtgctgctttatttttaa---tct-gtcaCTTTATCTATACCAATTTGTCTGATAAAGTATCCTTGTTTTAAAGAGTTGaacttaatt----tt----actttcttttagctTTGAGGCTTTTGAAGATCA--------------AAATTAC-ATTAATA--------------------------TGGAGA---------AATATGCTGTTGAGAAATATGGAAAAACTT-TATAAAACacttattattgtaat-------------------tttttactacaaat--------------------------------------------------------------atttt-----gtatacat---------------ttgTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9958153 1448 - 75148670 TTTTCTTAAAACAGCAAGAACAGCAAAGTT---AAATTTTTGTCCATACTGCC--------ACCATTTTCAGTTTCACTAAGGTTCCCAGTTTTTCTTAAAATGCCAATGTTCAGAGTTAAGA-------------AACACATTTAATGAATGAACAGAAATAAACAGAAGTAATTGTAGACATTTGTGCTATGCCAGAGATGTAAAATTTATTAGGATAATCATGAAGAACTTCCTTAATTTCCAGAAAGATAGCACCCAAGACTGGAAACAGAATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCTTCGGGAAGCTGTAGGCATCCACCAATTCAGACTGCA----ATTGGTTA-------TAGCTGAACGGTCATTGAAAGTTTCTTGGTCTCTTTTTATT----TGCAAGGGGTGATTGTGATAGCAACATCCTT--GTTCCAGTTTCTAAAACAGAGCACATTAGTTGTAGGTACTGAGATACGTGAACGCTAAAGCTTCTATGCTGACTCTTTCAACCTCAGGCACTGAGCAAAGTAG-CCATCCAT---CAGCAGCTTCTTGGAAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAAGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCAGCGTCTG--TGGTATTTATGGGTTTGATTGAAAAGAAGGACCAGTCTTCTGAGGTGTGAATATCTCTCCTTTCTCTGGGGCTCTTATATATCCTCTCCACTGGGAGTTGGTCCAGCCAAGAGGCTTC-TTTCCTGGTTCTTGTTTATGTTAGTGTACCCATTATTCTTTAATTTGTTTGACATTTAGAC-AC-TGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATGTGAACTGATTACCCTTGCTATTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGATTAC---TGCATGACAGTGAGTCTGTACAATATGTGGGCCTGCTCTCCAGTGCTGCTTTATTTTTAA---TCT-GTCACTTTATCTATACCAACTTGTCTGATAAAGTATTCTTATTTTAAAGAGTTCAACTTAATT----TT----ACTTTCTTTTAGCTTTGAAGCTTTTGAAGATCA--------------AAATTAC-ATTAACG--------------------------TGGAGA---------AATATGCTATTGAGAAATATGGAAAAACTT-TATAAAACACTTATTATTGTAGT-------------------TTTTTACTACAAAT--------------------------------------------------------------ATTTT-----GTATACAT---------------TTGTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112831063 1442 + 159171411 TTTTC-TAAAACAGCAAGAACCACAAAATTAAGAAATTTTTGTCCATGCTGCC--------ACCAGTTTCAGTTTCACTAATATTTCCAGTTTTTCATAAAATGTCAATGATCAAAGTTAAGA-------------AACATATTTAATAAAAGAACAGAAATAAACAGAAGTAATTGTAGACATTTGTGCTATGCCAGAAATGTAACATTTATTAGGATAATCATGAAGAACTTCCTTAATTTTCAGAAAGATATGACCCACGACTGGAAACAGAATTCCCAAAGCACCCACAGAAAGAGACACTTTAATATGAAGGAATCGAACAGCCTCAGGAAGCTGTCGGCATCCACCTATTCAAATTGCA----GTTGGTTA-------TAGCTAAATGGTCATTGAAAGTTTCTTGGTCTC---TTTTT----TGCAGGGGGTGATTGTGATAGTACCATCCTT--GTCCCAATTTCTTAAGCAGAGTAAATTAGTTGCAGGTACTGAGCTAGGTGAACTCTAAAGCTTCTAGGCTGCCTTTTTCGATCTCAGGCACTGAATAGAGTAG-TCATCCATCAGCAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAAGTGGTGAGGTTGAGGGTCTCCAGGTTTGAAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAGCAGGTGGGCTCCAGTAACCAAACTGCGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTATCATAGGAGCAGATAGTGGTGGCTGGCCCGGTGGGGACACTGCAGCCGTAGGGGACACAGCAATCCATGGCGATGGGGGTCTG--CAGTATTTGTGGGTTTGGTTGAAAAGAAGGAAGAGACTTCTGAGGTTTGAATGTCTCTCCTTTCTCTGGGGCTCTTATATACCCTCTCCACTGGGAGTTGGTCCAGTCAAGAGGCTTC-TTTCCTGGTCCTTGTTTATGTTAGTATACTCATTATTCTTTAATTTGTTTGACATTCAGAC-TC-CGTAAAGAGTCCCCATTTTCCTAATTAACTTTTATTTGAGTTCATTGCTAAATCCGAACTGATTACTCTTGCTGTTTGTCACTGGAACACAAGCTTTATGAGGTATCACCAAAGCCTTCTGTTATTATATTTTCAACACCAGCCCTGCTGGGGAACAC---TGCATGACAGTGGGTCTGT--GATATGTGGGTCTGCTCTCTAGGGCTGCTGGAGTTTTAA---TCT-TTCACTTTATCTATTCCAATTTGTCTGATAAAGTATTCTTGTT---AAAAGTCGAGCTTAATT----TT----GCTTTCTTTTATCTTTGAGGCCTTTGAAGATCA--------------AAATTAC-ATTAATG--------------------------TGGAGA---------AACATGCTATTGAGAAGTATGGAAAAACTT-TAAAAAGCAC---ATATTCTAG--------------------CTTTTACTTTAAAAT-------------------------------------------------------------ATTTt-----gtatacat---------------ttatt i calJac3.chr5 C 0 C 0 s mm10.chr11 99549993 1488 + 122082543 TTTCCCTAGAATAGCAAGAGCAACAAAACCAGTAAGTCTT--GCTTTGCTGCC--------ACTATTTTCAT---------GGCTCTCGGTTTCTCTTAAAATGACA---TCAGGAGTTAAGA-------------AACACATTTAACAAAGTCATAGAAATAAACAAA---AATTATAGACATTTGTGCTATGGCACAGACACAAAATTTATTAGGAAGATCATGAGAAAATTCCTCGATTTGCAGAAAAATACCCCCCAAGACTGAAAACAGAAACCCCAAA-CACCCAAAGAAAGGCACACATTAAGATGAAGGAGTC-AACGCCTTCAGACATCTTGAAGCAT-CAATAGTCCGAACTGCACACGGTCGGTAA-------ATGTTGCATTACC----AAAGACTC-TGGTTTCTTTTTGTTGAGGTGGGAGAGGCCATTGTCATGACAATATCACTCAACTCCAACTTCTAAATCAGAATAAGCTAATTGCAGGTTCT--GCCAGGTAAGC-CTAGAGCTCCCGGGTTGACTCTTTCGAAGACTGGTGCCAAGCAAGGGAG-CCACAGGT---CAGCAGCACCTTGGGACACAGGGCTCCTCACAGCCTGGCTGCACATAGGTGGTGAGGTTGACAGTCAGCAGGTCTGGGGTTGGGTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACACAGGGCTGAGGGATGTGGCAGGGTGGGGGGCAGTTGTCACAGCAGGTGGGCTCCAGCTGCCAAATGGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGACTTGTCTGAGGAGCAGATGGTGGTGGCAGGGCCGGTGGGGACACTGCAGCAGCGGGCAACACAGCAAGCCATGGTGCT-GGAGTCTGGTTGGCTTTGATCTCTTC----------AAAGATGAAATTTCTGAAGTTCAAATGTCTCCTCTTGCTCTGGGGTTCTTATATACCCTCTCCAGTGGGCGTTGACCCTACCAATGGGCTTCTTTTCCTGGTTCTC----------GTGTTCCCATTATCCTTTAATTGGCCTGCCATTTAGATGCC-TGTAAAGAGTCCCTATTCTGCTAATTACCTTTTATTTGAATTCATTGCCAAATCTTCACTGATTACACTTGCTGTTTGTCACTAGGACACAAGCTTTATGATGTACCACAAAAGGCTTCTACAATTACAGTGTCACTACCAG-GCTATAGGGGACCACAGGGGCATGACAGT-AATCTGT--AGAGTGCTGCTCTCCTTGCTATTGCTGACAACCTTTTAG---TCTCTTTGCCCTTTCTCTATCA----GCCTGATGAA-TGTTTACGTTTTGAAGAGATGAACTGCATTTTAGTT----ACTGTCTATGAGCACTGAGGCACTTGCAGCTTA--------------ACACTAC-ACTAAAG--------------------------TGG-----------------TTTGATGAGAAATATGGACGAACCT-TGCAAA-TAGTTATTATTTCTATACAAA------ATATTACATATTTATTAAAAATTGAAAAT---GTAAAAGAGCATAAAGA-------------TATCATCTGGAAATATCTATTGATATTACACAGCACACATATAAATATGATGGGATTATT i mm10.chr11 I 5381 C 0 s canFam3.chr9 39378082 1608 - 61074082 TTTTCTTAAAACAATAAGAACAATAAAAGCAAGAAATATTTGCCTGTACAGTCTTTTTTTTTTTTTTTTTGGTTTTGC--AGATACTCTGTTTTTCTTAAAATGTTGACTTTTAGAGTTCAGAAGTACATTTGATGAATACATTTAATGAATTAATAGGAATAAACAAAAATAATTATAGACATTTGTGCTATGCCAGAGATGGAAAATTTATTAGTATGATCATGAAAAAGATCTTTAGTTCCCAGAAAGATACCACCCAACACTGGAAAC--AATCCCCAAAGCA-CCAAAGAAAGATAAACTTTAATACGAAGGAAATGAAAAACTTTGGGAAGCCAATAGCATCCACATATTCAAATTGCC----TTTGGTCACTAATATCTACCACGTGGCCACTGAAAGTCTCTTGGTTTCTTTTTG------AGTGAGGGTTTTCAGGGATAATGTCATCCTT--GTTCCAACTTGGAAAGCAGAGTCAATTAGTTGTAGGTACTGAGACAGGTGGACACTAAAGCTTC-----TGAGTTCTTCATTGTCAGGCATGGAACAAAACAGCCCATCATT---CAGCAGCAGCTTGAGATGCAGGG---CTCACAGGAGGGCTGAGTGTAGGTTGTGAGGTTGAGGGTCTCCAGGCCTGGGGTAGGGTGGCTGGAGTTGAGCAGGAAGCAGGTGGGCACACAGGGCTGAGGAATATGGCAGGGTGGGGGGCAGTTGTCACAGCAGGTTGGTTCCAGTAACCAAGTCGTGTGTGGGCAGGTGCTAGGCAGGCAGACTCCACACCGGCAGCATTTGTCAGAGGAGCAGATGGTGGTGGCGGGGCCAGTGGGTACGCTGCAGCAGCAGGGAACGCAGCAAGCCATGGCG-TGGGAATCTG--TGTTTTAAATTGATTTGGTTGTAACGATAGATGAGGCTTCTAAGATGTGCATGTTTCCTCTTGCTTTGAGGCTCTTATATACCCTCCCCAGTGGGTGTTGGTCCAACCAGAAGGCTTC-TTTCCTGGTTCTTGTTTATATTAGTGTACCCATTATCCTTTGATTGGTTTGACATTTAGAT-GCTTGTAAAGAGTCTCTATTCTCCTAATTAACATTTATTTGAGTTCCTTGCTAAATCTGAACTGATTACTCTTGTTGTTTGTGACTGGAACACAAGTTTTATGACATATCACCAAAAGCTTCTGCTATTATAATTCCAACACCAGACTTTCTGGGGAATAT---TGCACAATAGTATACCTGC--ACTATGTAAGCCTTATCTCTAGTGCAGGTCTAATGTTTATTCTCT-TTGCCTTTATCTGTATCAGTGGGCCTGATGATGTATTCTTGTTTGAAAAAGTTGAACTTAAGT----TTAGTAACTTTCTTTTAGCTTTGGGACTTTAAAATATTACTTAATTTTTTGTTAAGCTATAATCAACGTGTAACTTATTAAGTGTTGGGACTTTTGAAGATCATATCTTAACATGCTTTTGAGAAACATGTGCAGACTTGTAAAAGACAGCTATTTTTCCATTTTTGACCATACATATTATGTATTTATTTAAAAATTTGAATaaaatagaagagtataaagaaaactcataatcttatcatcaagagaa--------attct-----ctatgaatatttgcatgta----ttctt i canFam3.chr9 C 0 I 205 a score=111946.000000 s hg38.chr17_JH159146v1_alt 144110 40 + 278131 tatcattaca---------------ttacattact---ggaatcatattgtgcatagg s panTro4.chr17 66264623 40 - 82630442 tatcattaca---------------ttacattact---ggaatcatattgtgcatagg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24797843 40 - 73212453 TATCATTACA---------------TTACATTACC---GGAATCATATTGTGCATAGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48020238 40 - 81552678 tatcattaca---------------ttacattact---ggaatcatattgtgcatagg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53124817 43 + 80904711 TAGTATTACA---------------TTACATTACTGGAGGAATCACATTGTGCATAGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52649051 43 + 80997621 TAGTATTACA---------------TTACATTACTGGAGGAATCACATTGTGCATAGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47692415 43 + 74645514 TAGTATTACA---------------TTACAttactggaggaatcacattgtGCATAGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9959601 43 - 75148670 TAGTATTACA---------------TTACATTACTGGAGGAATCACATTGTGCATAGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112832505 36 + 159171411 t----ttata---------------ttatattact---ggaatcatattgtgcatagg i calJac3.chr5 C 0 C 0 s mm10.chr11 99551481 53 + 122082543 TTTGACTATATGCAATCATCTATTTTTATATTTCT---GGAATCATTTTATG--TAGA i mm10.chr11 C 0 C 0 e canFam3.chr9 39379690 205 - 61074082 I a score=62751.000000 s hg38.chr17_JH159146v1_alt 144150 35 + 278131 ttctgaaactt---gcctttgtgtgtgtgcatatatat--------------------------- s panTro4.chr17 66264663 35 - 82630442 ttctgaaactt---gcctttgtgtgtgtgcatatatat--------------------------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24797883 35 - 73212453 TTCTGAAACTT---GCCTTTGTGTGTGTGTATATATAT--------------------------- i ponAbe2.chr17 C 0 I 84 s nomLeu3.chr19 48020278 26 - 81552678 ttctgaaactt---gcctttgtgtgtgta------------------------------------ i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53124860 28 + 80904711 TTCTGAAACTT---GCCTTTGTGTATATCTA---------------------------------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52649094 28 + 80997621 TTCTGAAACTT---GCCTTTGTGTATATCTA---------------------------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47692458 28 + 74645514 TTCTGAAACTT---GCCtttgtgtatatcta---------------------------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9959644 28 - 75148670 TTCTGAAACTT---GCCTTTGTGTGTATCTA---------------------------------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112832541 34 + 159171411 ttctgaaactt---gcc-ttgtgtatatgtatatatat--------------------------- i calJac3.chr5 C 0 I 2 s mm10.chr11 99551534 35 + 122082543 TTCTATAACGT---ACCTTCTTGCATAAGCTCATATAT--------------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 39379895 65 - 61074082 ttctgatatttctagtatttttttctatacatttttttattatttttttatgttgctggaatcat i canFam3.chr9 I 205 C 0 a score=704857.000000 s hg38.chr17_JH159146v1_alt 144185 272 + 278131 --------------tatatat--------------------atata---taattatcttatattttaaaggatatttgatagtgttacttttaatatttcttagcatttattatataattgcacttctatgttactttaaaattttatattatta------tgcattgaggttattttccacttttctctacaataattttggcaac--ag-agcacctctgtatgtaaatctttgtgcatatttttgattatttcagaaacagaattaattatttggtagaattataggggcaaatgttaatttccagtatttttaa s panTro4.chr17 66264698 258 - 82630442 --------------tatatat--------------------atata-----attatcttatattttaaag------------tgttacttttaatatttcttagcatttattatataattgcacttctatgttactttaaaattttatattatta------tgcattgaggttattttccacttttctctacaataattctggcaac--ag-agcacctctgtatataaatctttgtgcatatttttgattatttcagaaacagaattaattatttggtagaattataggggcaaatgttaatttccagtatttttaa i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48020304 272 - 81552678 --------------tatatag--------------------atata---taattatcttatattttaaaggatatttgatagtgttacttttaatacttcttagcatttattgtataattgcacttctatgttactttaaaatgttatattatta------tgcattgaggttattttcaacttttctctacaataattttggcaac--ag-agcacctctgtatataaatctttgtgcatatttttgattatttcagaaacagaattaattatttggtagaattataggggcaaatgttaatttccagtatttttaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53124888 265 + 80904711 --------------TGTATCT--------------------Gtata---taattat-----attttaaaagatatttgatagtgttacttttaatatt--ttagtatttattatataattGCACTTCTATGTTACTTTAAAAATGTAtattactg------tgcattgaggttattttcaacttttctctacaatagttgtggcaat--ag-agcacctctgtatataaatctttgtgcatatttttgattatttcagaaacagaattaattatttggtacaattataggggcaaatgttaatttctagtagttttaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52649122 265 + 80997621 --------------TGTATCT--------------------GTATA---TAATTAT-----ATTTTAAAAGatatttgatagtgttacttttaatatt--ttagtatttattatataatTGCACTTCTATGTTACTTTAAAAATGTAtattactg------tgcattgaggttattttcaacttttctctacaatagttgtggcaat--ag-agcacctctgtatataaatctttgtgcatatttttgattatttcagaaacagaattaattatttggtagaattataggggcaaatgttaatttctagtagttttaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47692486 265 + 74645514 --------------tgtatct--------------------gtatg---taattat-----attttaaaagatatttgataGTGTTACTtctaatatt--ttagtatttattatataattgcaCTTctatgttactttaaaaatgtatattactg------TGCATTGAggttattttcaacttttctctaCAATAGTTGTGGCAAT--AG-AGCACCTCTGTATATAAATCTTTGTGCATATTTTTGATTATTTCAGAAACAGAATTAATTATTTGGTAGAATTATAGGGGCAAATGTTAATTTCTAGTAGTTTTAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9959672 270 - 75148670 --------------TGTATCT--------------------GTATA---TAATTATTT--CATATTTTAAGATATTTGATAGTGTTACTTTTAATATTTCTTAGTATTTATTATATAATTGCACTTCTATGTTACTTTAAAAATGTAtattactg------tgcattgaggttattttcaacttttctctacaattattgtggcaat--ag-agcacctctgtatctaaatctttgtgcatgtttttgattatttcagaaacagaattaattatttggtagaattataggggcaaatgttaatttctagtagttttaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112832577 259 + 159171411 --------------------------------------------ta---taattat-----attttaaaggatatttgatagtgttacttttaatattttctagtatttattttttaattgcacttctaagttactttaaaattttgtattatta------ttcattgaggttattttcaacttttctctacaataattgtggcaatagag-agcacctctgcatataattctttgtgtatatttttgattatttcagaaacagaattaattatttggtagaattatagggatgaatgttaattttcagtatttttaa i calJac3.chr5 I 2 C 0 s mm10.chr11 99551569 245 + 122082543 ---------------------------------------------T---TCATTATCTTGCATTCC------------------TGATTTTTAATGTTTCCTAGTATTTATCA-ATAATTGAACTTTTGGGTTACTTTAAGATTTCATTTTATTAATTATTTGCTTTTTAATTAATCTCAAGCATCTGCTTTGATAACAGTGGCAAT--AG-AGATTCTCT--ACATGAATCCTTGCATTTGTTTCTAATTA-TTCTGAAGTAGAAATATTTACCAGATAGAGTTATGGGGACAAATGTAAATGTCCAATAATTTCAA i mm10.chr11 C 0 C 0 s canFam3.chr9 39379960 301 - 61074082 tatacctactattctgtatcttgcctttttgcttaaacataatatattttcattatcttgaattcttaagtatatttgataatgttatttttaatgtctcctagcattcatcatatagttatacttctaagttacttaagaattttatatgatta------attatttaggttatttgcaaggt--------ggtaattgtggcagt--agtaacaactatggatagaaatctttatgcacatttctgatcatcttaggaacagaaataattattggatagaattattggagcaaatgctagttaacaatattttaa- i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24797918 84 - 73212453 I a score=317084.000000 s hg38.chr17_JH159146v1_alt 144457 101 + 278131 ggcctttcata-tcattgccatactgtttttcagaatggttctatttacctac-----ttttttt-ttcaaattatctatttccaccagatgtgtttgattaagaatt s panTro4.chr17 66264956 101 - 82630442 ggcctttcata-tcattgccatactgtttttcagaatggttctatttacctac-----ttttttt-ttcaaattatctatttctaccagatgtgtttgattaagaatt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24798002 102 - 73212453 GGCCTTTCATA-TGATTGCCATACTGCTTTTCAGAATGGTTCTATTTACCTAT-----TTTTTttgttcaaattatctatttccaccaggtgtgtttgattaagaatt i ponAbe2.chr17 I 84 C 0 s nomLeu3.chr19 48020576 100 - 81552678 cgcctttcata-tcattgccatactgtttttcagaatggttctatttacctat-----tttttt--ttcaaattatctatttccaccaggtgtgtttgattaagaatt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53125153 105 + 80904711 ggcctttcata-tcattgccatactgctcttcagaatggttctatttacctgg-ttttttttttt-ttcaaattacctatttctaccaggtgtgtttgattaagaatt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52649387 104 + 80997621 ggcctttcata-tcattgccatactgctcttcagaatggttctatttacctgg--tttttttttt-ttcaaattacctatttctaccaggtgtgtttgattaagaatt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47692751 106 + 74645514 GGCCTTTCATA-TCATTGCCATACTGCTCTTCAGAATGGTTCTATttacctggtttttttttttt-ttcaaattacctATTTCTACCAGGTGTGTGTGATTAAGAATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9959942 101 - 75148670 ggcctttcata-tcattgccatactgctcttcagaatggttctatttacctgg-----ttttttt-ttcaaattatctatttctaccaggtgtgtttgattaagaatt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112832836 99 + 159171411 ggcctttcaga-tcattgccatactgctcatcagaatggttctaTTTACCTAT-------TTTTT-TTCAAGTTATCTATTTCCACCAGGTGTGTTTGATTAAGAATT i calJac3.chr5 C 0 I 942 s mm10.chr11 99551814 55 + 122082543 AGCCTTTACTATTCATTACACTTCTGCCCTCCAG------------------------TATTTTT-T-------------------CAGTTGTGTTCGG--------- i mm10.chr11 C 0 C 0 s canFam3.chr9 39380261 91 - 61074082 gacctttgatattcattgtcatactgccctccagaatggttctctttgcctct-------------ttctatttatgtatccccacaagctatatttga----gaatt i canFam3.chr9 C 0 C 0 a score=2143568.000000 s hg38.chr17_JH159146v1_alt 144558 639 + 278131 -cccatttcgtatacctttgacagatactttattttaaaggtgttttccaatttcattggtgaaaaacacaattttatgattgttgtgtctgtatttc-ttttataaccagctaggttgaaatattccttcatatgc----atattggccatctgtct-tctattgagagttggc---------------tTGCTTTGTTTCCTTC----ACTGCTAATTGTGG-GCA----AATTGAATTTTTAGCTTCTGTCTATATAG------------ACTAAATAAAATAATAACTTAAGAATACAAAACTAAAATTCAAGTAAAATT-----ATTACCAAAGGAAAC-----TTATGAGCCTGAGCTAGATTAATCTGTTGACATTTGAtttcattctctctctctcttttttt-------------tctttttttttttGCAAGGTATTGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTAGGAAAGACCTGG---TTCTAGTACCAGTACGCTATTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTATACACCTCGAACCATTTCCGCTCAGCTTGGTCTCATGCTTCTTGCAAGCCATGGTTCTTCTCACATTCTTCATACCTCCTCTTTTAGGCACACCTGTTGAGTGGTGCATTGTGG-TGTGCATGTTT s panTro4.chr17 66265057 645 - 82630442 -cccatttcctatacctttgacagatactttattttaaaggtgttttccaatttcattggtgaaaaacacaattttatgattgttgtgtctgtatttc-ttttataaccagctaggttgaaatattccttcatatgc----atattggccatctgtct-tctattgagagttggc---------------tTGCTTTGTTTCCTTC----ACTGCTAATTGTGG-GCA----AATTGAATTTTTAGCTTCTGTCTATATAG------------ACTAAATAAAATAATAACTTAAGAATACAAAACTAAAATTCAAGTAAAATT-----GTTACCAA-GGAAAC-----TTATGAGCCTGAGCTAGATTAATCTGTTGACATTTGATTTCATTCTCTCTCTCTCttttttt------ctttttttttttttttttttACAAGGTATAGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTAGGAAAGACCTGG---TTCTAGTACCAGTACGCTATTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTATACACCTCGAACCATTTCCGCTCAACTTGGTCTCATGCGTCTTGCAAGCCATGGTTCTTCTCACATTCTTCATACCTCCTCTTTTAGGCACACCTGTTGAGTGGTGCATGGTGG-TGTGCATGTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24798104 633 - 73212453 -cccatttcctgtatctttgacaggtactttattttaaaggtgttttccaatttcatgggtgaaaaacacaattttatgattgtcgtgtctgtatttc-ttttataaccagctaggttgaaatattgcttcatatgc----atattggccatctgtct-tctattgagagctggc---------------tTGCTTTGTTTCCTTC----ACTGCTAATTGCAG-GCA----AATTGAATTTTTAGCTTCTGTCTATATAG------------ACTAAATAAAATAATAACTTAAGAGTACAAAACTAAAATTCAAGTAAAATT-----GTTACCAAAGGAAAC-----TTATGAGCCTGAGCTAGATTAATCTGTTGACATTTGATTTCGTTCTCTCTCTCTTTTTCTTT-------------------TTTTTTTACAAGGTATTGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTAGGAAAGACCTGG---TTCTAGTACCAGTACGCTATTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGACTTGTGGCCAATATCATTTATACACTTCAAACCATTTCCGCTCAGTGTGGTCTCATGCGTCCTGCAAGCCATGGTTCTTCTCACATTCTTCTCACCTCCTCCTTTAGGCACACCTGTTGAGTGGTGCATGGTGG-TGTGCATGTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48020676 632 - 81552678 -cccatttcctatacctttgacagatactttattttaaaggtgttttccaattctgtgggtgaaaaacacaattttatgattgtcgtgtctgtatttc-ttttataaccaactaggttgaaatattccttcatatgc----atattggccatctgtct-tccattgagagttggc---------------tTGCTTTGTTTCCTTC----ACTGCTAATTGTGG-GCA----AATTAAATTTTTAGCTTCTGTCTATATAG------------GCTAAATAAAACAATAACTTAAGAATACAAAACTAAAATTCAAGTAAAATT-----GTTACCAAAGGAAAC-----TTATGAGCCTGAGCTAGATTAATCTGTTGACATTTGATTTCATTCTCTCTCTCTCTTTTTTC--------------------TTTTTTACAAGGTATTGCA--TTTTTTCCTGAAATAAAATGTAGCTGTCGTAGGAAAGACCTGG---TTCTAGTACCAGCACGCTATTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTATACACCTCAAACCATTCCCGCTCAGCTTGGTCTCATGTGTCCTGCAAGCCATGGTTCTTCTCACATTCTTCCCACCTCCTCCTTTAGGCACACCTGTTGAGTGGTGCATGGTGG-TGTGCACGTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53125258 645 + 80904711 -cccatttcctataccgttgacagatactttattttaaaggtgtgttccagtttcttgggtgaaaaacacaattttatgattattgtgtttgtatttc-ttttataaccagctaggttgaaatattctttcatatgc----atattggccatctgtct-tctattgagagctggc---------------tTGCTTTCTTTCCTTC----ACTGCTAATTGTAG-GCA----AATTGAATTTTTAGCTTCTGTCTATATAG------------ACTAAATAAAATAA-----TAAGAATACAAAACTAAAATTCAAGTAAAATT-----ATCACCAAAGGAAAC-----TTATGAGCCTGAGCTAAATTAAACTGTTAACACTTGATTTCATTCTCTCtttttttctttcc--ttttttttttttttttttttttttACAAAGTATTGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTAGGAAAGACCTGGA--TTCTAGTATCAGTACGCTGTTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTAGAAACCTCAAACCATTTCCGCTCAGCTTGGTCTCATGCATCCTGCAAGCCATGGTTCTTCTCACATTCCTCCCACCTCCTCC-TTAGGCACACCTGTAGAGTGGTACATGGTGG-GGTGCATGTCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52649491 647 + 80997621 -cccatttcctataccgttgacagatactttattttaaaggtgtgttccagtttcttgggtgaaaaacacaattttatgattattgtgtttgtatttc-ttttataaccagctaggttgaaatattctttcatatgc----atattggccatctgtct-tctattgagagctggc---------------tTGCTTTCTTTCCTTC----ACTGCTAATTGTAG-GCA----AATTGAATTTTTAGCTTCTGTCTATATAG------------ACTAAATAAAATAA-----TAAGAATACAAAACTAAAATTCAAGTAAAATT-----ATCACCAAAGGAAAC-----TTATGAGCCTGAGCTAAATTAATCTGTTAACACTTGAtttcattctctctttttttctttcCttttttttttttttttttttttttttACAAAGTATTGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTAGGAAAGACCTGGA--TTCTAGTATCAGTACGCTGTTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTAGAAACCTCAAACCATTTCCGCTCAGCTTGGTCTCATGCATCCTGCAAGCCATGGTTCTTCTCACATTCCTCCCACCTCCTCC-TTAGGCACACCTGTAGAGTGGTACATGGTGG-GGTGCATGTCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47692857 646 + 74645514 -CCCATTTCCTATACCGTTGACAGATACTTTATTTTAAAGGTGTGTTCCAGTTTCTTGGgtgaaaaacacaattttatgaTTATcgtgtttgtatttc-ttttataacCAGCTAGGTTGAAATATTCTTTCATATGC----ATATTGGCCATCTGTCT-TCTATTGAGAGCtggc---------------ttgctttctttccttc----actgCTAATGGTAG-GCA----AATTGAATTGTTAGCTTCTGTCTATAtag------------actaaataaaataa-----taagaatacaaAACTAAAATTCAAGTAAAATT-----ATCACCAAAGGAAAC-----TTATGAGCCTGAGCTAAATTAATCTGTTAACACTtgatttcattctctctttttttctttcc--ttttttttttttttttttttttttacaaagtattGCA--TTTTTTCCTGAAATCAAATGTAGCTGTGGTTGGAAAGACCTGGA--TTCTGCTATCAGTACGCTGTTTAGACTGCTGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTCTACACCTCAAACCATTTCCGCTCAGCTTGGTCTCATGCATCCTGCAAGCCATGGTTCTTCTCacattcctcccacctcctcctttaGGCACACCTGTAGAGTGGTACACGGTGG-GGTGCATGTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9960043 640 - 75148670 -cccatttcctataccgttgacagatactttattttaaagatgtgttccagtttcctgggtgaaaaacacaattttatgattatcgtgtttgtatttc-ttttataaccagctaggttgaaatattctttcatatgc----atattggccatctgtct-tctattgagagctggc---------------tTGCTTTCTTTCCTTC----ACTGCTAATGGTAG-GCA----AATTGAATTGTTAGCTTCTGTCTATATAG------------ACTaaataaaataa-----taagaatacaaaactaaaattcaagtaaaatT-----ATCACCAAAGGAAAC-----TTATGAGCCTGAGCTAAATTAATCTGTTAACACTTGAtttcattctctctttttttctttcc--------ttttttttttttttttAAACAAAGTATTGCA--TTTTTTCCTGAAATCAAATGCAGCTGTGGTAGGAAAGACCTGGA--TTCTAGTATCAGTACGCTATTTAGACTGCAGGCATAGTTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATCATTTAGAAACCTCAAACCATTTCCGCTCAGCTTGGTCTCATGCATCCTGCAAGCCATGGTTCTTCTCACATCCCTCCCATCTCCTCCTTTAGGCACACCTGTAGAGTGGTACATGGTGG-TGTGCATGTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112833877 636 + 159171411 -CCCATTTCCTGTATTTTTGATAGATATTTTAttttaaaggtgttttccaatttcataggtgaaaagcaaaattttgtggttgttgtgcttgtatttc-ttttatactcagttagactgaaacattctttcgtatgc----atattggtcatttatct-tCTACTGAGAGCTGGC---------------TTGCTTTGTTTCCTTC----AGTGTTAACTGTGG-GCA----AGTTGAATGTTTAGCTTCTGTCTGTATAG------------ACTAAATAAAATAATAACTTAAGAATACAAAACTAAAATTCAATTAAAATT-----GTTACCAAAGGAAAC-----TTGTGAGCCTGAGCTAGATTAGTCTGTTGACATTTGATTTCATGCTCTCTCTCTCTCTCTTT-----------------TTTTTTTTTACAAGGTGTTGCATTTTTTTTCCTGAAATCAAATGTAGCTGTAGGAGGAAAGATCTGGA--TTCTAGTACCAGTATGCTATAGAGACTTCAGGAATAGCTCAGTGTTTAAGAGGGAGCACAAGGTGGGCTTGTGGCCAATATAATTTATACACCTCAAATCATTTCCCCTCAGCTTGGTCTCATGTGTCCCGCAAGCCATAGTTCTTCTCACATTCTTCTCACCTCCTCCTTTGGG--CACCTGTAGACCTGGGCACGGCAG-TGCGCATCTTT i calJac3.chr5 I 942 I 461 s mm10.chr11 99551869 567 + 122082543 ------TTTGTAAAC----------------ATTTTCAAAGTCTTTTCCAATTTGCAAGACGAAAGATGACATTTCTT--TTATTGCG------TTTC-TCCCATAGCACGTTAGGCTGACACATGCTCCCAT-TGCTCAGGTCCTGGGCATTTGCCT-CCTAGCATGAATTAGCCCGGATTCTGCACTGTTGCTTCATTTCTTTG----GCTGTTCAATGTGGAACAGAGCAGTTGAGTTCTTAA--TCTGTATGTAGAATAAAAATGAAACACTAAATGAAATAATAAGTTGAGACTACAAATTTAGAATTCATGTAAAGCTGATTGATCACAATAGAAAGCC--AACTTTGGGCCTCAACCGGATAGAT---------TTTAATTTC-------------------------------------------------------TTGTT--CTGTTTGCT-----------------------GAAAGACCCAA---GTCTCCTTCCAGAGTGCCATTTAGACTTCAGATACACTTCAGTGCTCAAGAGCAAGTACTAGGTGTGTTCCTGGGCAGGATCATGCTTGTAGCTTAGAGTATTTCTGCTCAGCTTAGACTCATGCGGCCTTTAAG----------TCTCATACTCGTCTCCCCTCCCACTCTAAGGCTACCTGTCCGTCAGTCTATGATGA-TAGGTGTGTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39380352 614 - 61074082 accatttccctgtacttttgatggatattttatt-----------tgccaatttgttgggtgaaaaatgaaattttgttattgttgtatttgtatttctttttataatgagttaggttgagacattatttcatatgt----gcattagccatttatttctctattgagaactggc---------------tTGCTTTGTTTCCTTCTCTTACTGCTAAGTGTGG-GAA----AGTCGAATTTGTAGCTTATATCTGCAT--------------CCTAAGTAAAAGAAAAATTCAAAACCATGCTACTAGTATTCACATGAAATT-----ACTACCAATAGAAATCGAAGTTAAGGGCCTAAG-----TTAATCTGTCTACATTTGATTTTATTC------AGTTTTTTTTC-----------------------------AAGTAGTGCA--TTTTCTCCCTAAATCAAATGTATCTGTGGTAGGAAACACCTGGACTCTTTCATTCCAATACATCATTTAGGCTTCAGGCATGGTTCAATATTTAAGAGGGAACATGGAGTGGGCTTCTGTGCAGGATCATCCTGAC-CCTCACATTATTTACACTTAACATTGATTCACTCATTCTTCAAGTCATGATTCTTCTCACTTGCTTCCCACTTCCTACTTTAAGTATACCTGTGTCTCTGTGCATGATGGAGGAGCATGTCT i canFam3.chr9 C 0 C 0 a score=2130750.000000 s hg38.chr17_JH159146v1_alt 145197 622 + 278131 GTATGTTTTGGGAATGGGGACgtgtagtcaagaggaccacctgaggagtcagaatagctct---tgactgttcccggtgctgctggttatcttcctcgttatggtaagtaattcacttttaggagcttcatcctttttctctgcgaaatcagggtaatagcatgcatattcctccacttagaagattattgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatataatgctatgcaaaaataaattattatcatGATTGAAACAAATTACAGATGAAATTCAAGGCAAGGTAAAGATAAAAGAAACATAGTCAAAAGAAGAAAAGAAAATGAGATGAAGGTAAGTAAGAGAGCAACCTTACAGGAAAGAGCAAAC-----------ATTTATATT---------AGTTTATACaaataaataaataaataaataaTCACATCTACGATTAGAGAAAGT-GGTTGGCATATAAATTAACAAACCTAAAAATTTGAAA-AGCTCCCTATGGCTCTGATTGAAAGGGAGAATTCATGATATCTTCTGGTTCCTGGACTTTCCCCAGATTTATCTTTGTATGAATGCCTGCCGAAGTGTGCACCCTTTTACTTAGAACTGATTAGTATTTCACTTAT s panTro4.chr17 66265702 618 - 82630442 GTATGTTTTGGGAATGGGGACgtgtagtcaagaggaccacctgaggagtcagaatagctct---tgactgttcccggtgctgctggttatcttccttgttatggtaagtaattcacttttaggagcttcatcctttttctctgcgaaatcagggtaataacatgcatattcctccacttagaagattattgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatataatgctatgcaaaaataaattattatcatGATTGAAACAAATTACAGATGAAATTCAAGGCAAGGTAAAGATAAAAGAAACATAGTCAAAAGAAGAAAAGAAAATGAGATGAAGGTAAGTAAGAGAGCAACCTTACAGGAAAGAGCAAAC-----------atttatatt---------agtttatacaaataaataaataaataa----tCACATCTACGATTAGACAAAGT-GGTTGGCATATAAATTAACAAACCTAAAAATTTGAAA-AGCTCCCTATGGCTCTGATGGAAAGGGAGAATTCATGATATCTTCTGGTTCCTGGACTTTCCCCAGATTTATCTTTGTATGAATACCTGCCGAAGTGTGCACCCTTTTACTTAGGACTGATTAGTATTTCACTTAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24798737 614 - 73212453 GTATGTTTTGGGAATGGGGACGTATAGTCaagaggaccacacgaggagtcagaatagctct---tgactgttcccggtgctgctggttatcttccttgttatggtaagcaattcacttttaggagcttcatcctttttctctgagaaatcagagtaatcacatgcatattcctccactcagaagattattgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatatagtgctatgcaaaaataaattattatcatGATTGAAGCAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAACATAGTCAAAAGAAGAAAAGAAAAAGAGATGAAGGTAAGTAAGACAGCAACCTTATAGGAAAGAGCAAAC-----------ATTTATATT---------AGTTTATACAAATAAATAAATAA--------TCACATCTACGATTAGAGAAAGT-GGTTGGCATATAAATTAACAAACTTAAAAATTTGAAA-AGCTCTCTACGGCTCTGCTTGAAAGAGAGAATTCATGATATCTTCTGGTTCCTGGACTTTCCCCAGGTTTATTTTTGTATGAATACCTGCCAAAGTGTGTACCCTTTTACTTAGGACTGATTAGTATTTCACTTAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48021308 614 - 81552678 GTATGTTTTGGGAATGGGGACGTATAGTCaagaggaccacatgaggagtcagaatagctct---tgactgttcccggtgctgctggttatcttccttgttatggtaagtaattcacttttaggagcttcatcttttctctctgcgaaatcagggtaataacatgcatattcctccactcagaagattattgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatatagtgctatgcaaaaataaattattatcatGATTGAAGCAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAACATAGTCAA---AAGAAAAGCAAAAGAGATGAAGGTAAGTAAGAGAGCAAGCTTATAGGAAAGAGAAAAC-----------ATTTATATTGG------AAGTTTATACAAATAAATAAATAA--------TCGCATCTACGATTAGAGAAAGT-GGTTGGCATATAAATTAACAAACTTAAAAATCTGAAA-AGCTCTCTATGGCTTTGCTTGAAAGAGAGCATTCATGATATCTTCTGGTTCCTGGACTTTCCCCAGATTTCTCTTTGTATGAATACCTGCCAAAGTGCGCACCCTTTTACTTGGGACCAATTAGTATTTCACTTAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53125903 619 + 80904711 GTATGTTTTGGGAATGGGGATGTGTATTTaagaggaccacattaggagtcagaagagctct---tgactgttcccggtgctgctggttaccttccttgttatggtaagtaattcacttttaggagcttcatcttttttctctgcaaaattagggtaataacatacatattcctccactcaggagattactgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatctagtgctatgcaaaaataaattattatcatGATTAAAGCAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAAC--AGTCAAAAGAAGAAAAGAAAAAGAGATGAAGGTAAGCAAGAGAGCAACCTTACAGGAAAGAGCAAAC-----------ATTTATATTAG------AAGTTTATACAAATAAATAAATAAATAA----TCACATCTACTATTAGAGAAAGT-GCTTGGCATATAAATTAACAAACTTAAAAATTTGAAA-ATCTCTCTATGGCTCTGCTTGAAAGACAGAATTCATGATATCTGCTGGTTCCTGGACTTTCACCAGATTTATTTTTGTATGAATACCTGCCAAAGTATGCATCCTTTTACTTAGGACTGATTATTATTTCACTTAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52650138 619 + 80997621 GTATGTTTTGGGAATGGGGATGTGTATTTaagaggaccacattaggagtcagaagagctct---tgactgttcccggtgctgctggttaccttccttgttatggtaagtaattcacttttaggagcttcatcttttttctctgcaaaattagggtaataacatacatattcctccactcaggagattactgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatatagtgctatgcaaaaataaattattatcatGATTAAAGCAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAAC--AGTCAAAAGAAGAAAAGAAAAAGAGATGAAGGTAAGCAAGAGAGCAACCTTACAGGAAAGAGCAAAC-----------ATTTATATTAG------AAGTTTATACAAATAAATAAATAAATAA----TCACATCTACTATTAGAGAAAGT-GCTTGGCATATAAATTAACAAACTTAAAAATTTGAAA-ATCTCTCTATGGCTCTGCTTGAAAGACAGAATTCATGATATCTGCTGGTTCCTGGACTTTCACCAGATTTATTTTTGTATGAATACCTGCCAAAGTATGCATCCTTTTACTTAGGACTGATTATTATTTCACTTAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47693503 619 + 74645514 GTATGTTTTGGGAATGGGGATGTATATTTAAGAGGACCACATTAGGAGTCAGAAGAGCTCT---TGACTGTTCCCGGTGCTGCTGGTTACCTTCCTTCTTATGGTAAGTAATTCACTTTTAGGAGcttcatcttttttctctgcaaaatTAGGGTAATAACATACATATTCCTCCACTCAGGAGATTACTGTGAGGTTCACATGTGATAAAAAGGG-TGAAAGCTCATGGACAACCATATAGtgctatgcaaaaataaattattatcatGATTAAAGCAAATTACAGATcaaattcaaggcaaggtaaagataaaggaaac--agtcaaaagaagaaaagaaaaagagatgaaggtaagcaagagaGCAACCTTACAGGAAAGAGCAAAC-----------ATTTATATTAG------Aagtttatacaaataaataaataaataa----tcacatcTACTATTAGAGAAAGT-GCTTGGCATATAAATTAACAaacttaaaaatttgaaa-atctctCTATGGCTCTGCTTGAAAGACAGAATTCATGATATCTGCTGGTTCCTGGACTTTCActagatttatttttgtatgaataCCTGCCAAAGTGTATGCCCTTTTACTTAGGACTGattattatttcacttat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9960683 619 - 75148670 GTATGTTTTGGGAATGGGGATGTATATTTaagaggaccacattaggagtcagaagagctct---tgactgttcccggtgctgctggttaccttccttcttatggtaagtaattcacttttaggagcttcatcttttttctctgcaaaattagggtaataacatacatagtcctccactcaggagattactgtgaggttcacatgtgataaaaaggg-tgaaagctcatggacaaccatatagtgctatgcaaaaataaattattatcatGATTAAAGCAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAGC--AGTCAAAAGAAGAAAAGAAAAAGAGATGAAGGTAAGCAAGAGAGCAACCTTATGGGAAAGAGCAAAT-----------ATTTATATTAG------AAGTTTATACAAATAAATAAATAAATAA----TCACATCAGCTATTAGAGAAAGT-GCTTGGCATATAAATTAACAAACTTAAAAATTTGAAA-AGCTCTCTATGGCTCTGCTTGAAAGACAGAATTCATGATATCTGCTGGTTCCTGGACTTTCACCAGATTTATTTTTGTATGAATACCTGCCAAAGTATGCATCCTTTTACTTAGGACTGATTATTATTTCACTTAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112834974 607 + 159171411 GTATGTTTTGAGAATGGGGATGTGTAGCCaagaggaccacatgaggagtcagaagagccat---tgactattcccagtgctgctggttatcttccttgttatggtaagtaattcacttttaggagcctcatctattttctctggaaaatcaggttaataacatgtatattccttcactcagaagattattgtgaggttcacatgtaatgaaaaggg-tgaaagttcatgaacaaccctgtagtgctatgcaaaaataaattattatcattAGTGAAGTAAATTACAGATCAAATTCAAGGCAAGGTAAAGATAAAAGAAACATAGTCAAAAGAAGAAAAGAGAAAGAGATGAAGGTAAGTAAGAGAGCAACCTTAAAGGAAAGAGCAAAC-----------ATTTATATTCA------AAGTTCATACAAATAAAGAA------------TCCCATCC---ATTAGAGAAAGTAATTTGGCATATAAACT----AACTTAAAAATTTGAAA-AGGTTTCTATGGCTCTGCTTGAAAGAGAGAATTCATGATATCCACTGGTTCATGAACTTTCCCCAGATTTATCGTTGTATGAATACCTGCCAAAGTGTGCATCCTTTTACTTAGGACTGATTAGTATTTCACTTAT i calJac3.chr5 I 461 C 0 s mm10.chr11 99552436 557 + 122082543 GTATATTTGGAAAGCAGGCATATAGAATCAAGAGG-CCATGTTTGGAGGCAGAGGAGCTCTGTATTATTGGTCCAAGGAGTACTGGTTACCTACCTTGTTATTGTAGGCAGTTCACTTTTGGGAAACTTGCCCTTT---TCTGCAAAGGAGGGGCAGTAGCACGTACACTCTCTTACTTAAAGGAGCATTGTGAGCCTCACATGAGATGAAAAGAGCTTAAAGTCCATGG---------------TGTGCAAAGATGAG-CACCATGATGATTGAAATAAGGTGCAGATCACA--CAAGGCAAAGTAAAGATAAAAGAAAC--AGTCACAGAAGGAGGAGGAGAAGAGA--AACACAAGTAAGAGGGACACCTCAGGTGAGACAGGGGGCCTGATTTCAGAGTTCATGCTAGTTAAGTAAGTCAACA-AAATAA--AAATAAGTGT----TAACACCCGAGAGCAGAGAAAAT-GGCTGGCATATACACTAAGTTACTGCAATACTCAAGA----------------------------------------ATCTTCAG-----------------AGATTTATCACTGAATGAATAGCTGCTAAATTGCACATTGGCTTGCTTAGGGAAAATGAATATTTCAtgtgt i mm10.chr11 C 0 I 2440 s canFam3.chr9 39380966 543 - 61074082 GTGTGTTTTTCTGGAAGGGGTATAGATTCATTATGATCATattaggcctcagaagagctct---ttactggtccctgtccagctgatagcctttcttgttatggcaagtcattcacattttagattttcatctttcgcctctgcaaaataaggatcataatatctacattcttctactcaggagattgttgt--------------------------------CCATAGACAACCATAAAGTGTTACACAAAGATA-------ATCATTATCCAAGTAAGTTGCAGATCAAATTCAAAGTGAGAGAAAGGAGAAAGAAAT--AGTTTAAAGAAGAAAA--AATATATCTGTAGAT-AGTAAAATAGCAACCTTATAGAAAATAGGAAAC-----------ATTTATCTG--------AAGGT---------------------------TCATACCCACAATTAAATAAAAT-AG-TGGCACAGAAATTAATAAACTTCAAATTTTAAAAAAGTTCTCTATGACTCTGCTTGGAAGAAAGGATTTGTAATCTCTGCTT-------GATTTCAACCAGATTTATCTTTGAGTGAATACCTGCCAAATTGCTCACTCTTTTGCTTAGGACTGATTAACATTTTCAG--- i canFam3.chr9 C 0 C 0 a score=2988895.000000 s hg38.chr17_JH159146v1_alt 145819 895 + 278131 TATTTAAAAAGTAattcaacagacatttactgagcagttactatgtgctagtcactgtgataaatgttggatttatagcaataaacaagataggcaccatccttgccctcatgaagtttacagtttggtggaagaatttttcatac--acataacatattattataaGCTGCTGCTATTATACATTATAATAGGaaagaaaa---------------agagta-aaagacaaaaaataaaag--aaaaaaTT-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGATTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTGAGTTCACCATAAAAGCTTAGAGCAACTATTACTGTT-TATGCAGCACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGATTACAAACAGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTGACAAGACTTGCagcactttattaaaatgtattttctctgcagtggtctaagagacctgagaattactctcctttgtttataaatgatgacagtgattcatagagaggtgagatgatttgccttagatggttcgggagccagtgtgttaaaaactaaatataggacctaTTGGGATTGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGATACTAAGCATTTTATTTTTAAAAACAACGCGTATCTTTTTTCTTTAAGTGAATGTAGGAAAAACATGGTGATTCTTGATGAGATGGTAGATTTTCGGGGTGCTAAAAATCTAGacacacacacacatacgcacacgcacactcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTATAGTCAATG s panTro4.chr17 66266320 895 - 82630442 TATTTAAAAAGTAattcaacagacatttactgagcagttactatgtgccagtcgctgtgataaatgttggatttatagcaataaacaagataggcaccatccttgccctcatgaagtttacagtttggtggaagaatttttcatac--acataacatattattataagctgctgctattatatgttataataggaaagaaaa---------------agagtA-AAAGACAAAAAATAAAAG--AAAAAATT-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGATTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTGAGTTCACCATAAAAGCTTAGAGCAACTATTACTGTT-TATGCAGCACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGACTACAAACGGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTGACAAGACTTGCagcactttattaaaatgtattttctctgcagtggtctaagagacctgagaattactctcctttgtttataaatgatgacagtgattcatggagaggtgagatgatttgccttagatGGTTCGGGAGCCAGTGTGTTAAAAACTAAATATAGGACCTATTGGGATTGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGATACTAAGCATTTTATTTTTAAAAACAACGCGTATCTTTTTTCTTTAAGTGAATGTAGGAAAAACATGGTGATTCTTGATGAGATGGTAGATTTTCGGGGTGCTAAAAATCTAGacacacacacacatacgcacacgcacactcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTATAGTCAATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24799351 895 - 73212453 TATTTAAAAAATAattcaacagacatttgctgagcagttactatgtgccagtcactgtgataaatgttggatatatagcaataaacaaaataggcaccatccttgccctcatgaagtttatagtttggtggaagaatttttcatac--acataacatattattataaGTTGCCGCTATTATACATTGTAATAGGGAAGAAAA---------------AGAGTA-AAATACAAAAAATAAAAG-AAAAAAATT-----ATTTTGTGGGACACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGATTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTGAATTCACCATAAAAGATTAGAGCAACTATTACTG-T-TATGCAGCACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGATTACAAACAGTTGTAGTGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTGACAAGACTTGCAGCACTTTATTAAAATGTATTTTCTCTGCAGTGGTCTAAGAGACCTGGGAATTACTcccctttgtttataaatgatgatagtgattcatagggaggtgagatgatttgccttagatGGTTTGGGAGCTGGTGTGTTAAAAACTAAATATAGGACCTATTGGGATTGAGCTGCC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGACACTAAGCATTTTATTTTTGAAAAGAAAGGGTATCTTTTTTCTTTAAGCGAATGTAGGAAAAATATGGTGATGCTTGATGAGATGGTAGATTTTCAGGGTGCTAAAACTCTAGacacacacacacatacacacacgcacacgcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTGTAGTCAATG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48021922 887 - 81552678 TATTTAAAAAGTAattcaacagacatttactgagcagttactatgtgccagtcactgtgataaatgttggatttatagcaataaacaaaataggcaccatccttgccctcatgaagtttatagtttggtggaagaatttttcatac--acgtaacatattattataaGTTGCTGCTATTACACATTATAATAGGaaagaaaa-----------------agta-aaagacaaaaa--aaaag--aaaaaa-T-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCCTGCAGACCCTCAGGATTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTGAGTTCAGCATAAATGCTTAAAGCAACTATTAC-GTT-TATGCAGCACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGATTACAAACCGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTGACAAGACTTGCAGCACTTTATTAAAATGTATTTTCTCTGCAGTGGTCTaagagacctgagaattactctcctttgtttataaatgatgatagtgattcatagagaggtgagaggatttgccttagatGGTTTGGGAGCTGGTGTGTTAAAAACTAAATATAGGACCTATTGGGATTGAGCTACC--TTTTGTGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAAATACTAAGCATTTTATTTTTAAAAACAAAGGGTATCTTTTTTCTTTACACGAACGTAGGAAAAACATGGTGGTTCTTGATGAGATGGTAGATTTTCGGGGTGCTAAAAACCTAGacacacacacac--acgcacatgcacacgcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTATAGTCAATG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53126522 903 + 80904711 TATTAAAAAAATAattcaacagacatttactgagcagttactatgtgctagtcactgtaataaatgttggatatatagcaataaacaaaataggcaccatccttgccctcatgaagtttatagtttgggggaagaatttttcatac--acataacatattattataaGTTGCTGCTATTATACATTATAATAGGAAGGAAAA--AGATTGGATTCTAAGGGCA-AAAGACAATAAATAAAAGAAAAAAAATT-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGGTTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTAAGTTCACCGTAAAAGCTTAGAGAAACTGTTACTGTT-TATGCAGAACATTGTGTTTCTCTAATGATAAAGAAGA--CAAGGTTACAGATTACAAACAGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTAACAAGACGTGCAGCACTTTATTAAAATGTATTTTCTCTGCAGTGGTCTAAGAGACCTGGGAATTACTCTCCTTTGTTTATAAATGATGATAGTGATTCATAGAGAGGTGAGATGAT-----TTAGATGGTTTGGGAGCCAGTGTGTTAAAAACTAAATATAGGACCTATTGGGATAGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGATACTAAGCATTTTATTTTTAAAAACAAAGGGTATCTTTTTTCTTTAAGCAATTGTAGGAAAAGTATGGTGATTCTTGATGAGATGGTAGATTTTCGGAGTGCTAAAAATCTAGacacacacatac--acgcacacgcacaagcacacaTCCAAGAA---GTCCAGTTTTAATTGTATCTTTCTACAGTCAATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52650757 903 + 80997621 TATTTAAAAAATAattcaacagacatttactgagcagttactatgtgctagtcactgtaataaatgttggatatatagcaataaacaaaataggcaccatccttgccctcatgaagtttatagtttgggggaagaatttttcatac--acataacatattattataaGTTGCTGCTATTATACATTATAATAGGAAGGAAAA--AGATTGGATTCTAAGGGCA-AAAGACAATAAATAAAAGAAAAAAAATT-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGGTTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTAAGTTCACCGTAAAAGCTTAGAGAAACTGTTACTGTT-TATGCAGAACATTGTGTTTCTCTAATGATAAATAAGA--CAAGGTTACAGATTACAAACAGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTAACAAGACGTGCAGCACTTTATTAAAATGTATTTTCTCTGCAGTGGTCTAAGAGACCTGGGAATTACTCTCCTTTGTTTATAAATGATGATAGTGATTCATAGAGAGGTGAGATGAT-----TTAGATGGTTTGGGAGCCAGTGTGTTAAAAACTAAATATAGGACCTATTGGGATAGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGATACTAAGCATTTTATTTTTAAAAACAAAGGGTATCTTTTTTCTTTAAGCAATTGTAGGAAAAGCATGGTGATTCTTGATGAGATGGTAGATTTTCGGAGTGCTAAAAATCTAGacacacacatac--acgcacacgcacaagcacacaTCCAAGAA---GTCCAGTTTTAATTGTATCTTTCTACAGTCAATG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47694122 899 + 74645514 tatttaaaaaataattcaacagacatttactgaGCTGTTACTATGTACTAGTCACTGTAATAAATGTTGGATATATAGCAATAAACAAAATAGGCACCATCCTTGCCCTCATGAAGTTTATAGTTTGGGGGAAGAATTTTTCATAC--ACATAACATATTATTATAAGTTGCTGCTATTATACATTATAATAGGAAGGAAAA--AGATTGGATTCAAAgggca-aaagac----aaaaaaaagaaaaaaatt-----attttgagggaAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGGTTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGATACAATATTACTTTAAGTTCACCGTAAAAGCTTAGAGAAACTGTTACTGCT-TATGCAGAACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGATTACAAACAGTTGTAATGCAACAAGTTTATTATAATAAGCTCTTCTCTTTTATTAACAAGACGTGCAGcactttattaaaatgtattttctctgcaGTGGTCTAAGAGACCTGGGAATTActctcctttgtttataaatgatGATAGTGATTCATAGAGAGGTGAGATGAT-----TTAGATGGTTTGGGAGCCAGTgtgttaaaaactaaatataggaCCTATTGGGATAGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGAtactaagcattttatttttaaaaacaaagggtatcttttttctttaagcaatTGTAAGAAAAGCATGGTGATTCTTGATGAGATGGTAGATTTTCGGAGTGCTAAAAAtctagacacacacatac--acgcacacgcacaagcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTACAGTCAATG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9961302 899 - 75148670 TCTTTAAAAAATAattcaacagacatttactgagcagttactatgtgctagtcactgtaataaatgttggatatatagcaataaacaaaataggcaccatccttgccctcatgaagtttatagtttgggggaagaatttttcatac--acataacatattattataaGTTGCTGCTATTATACATTATAATAGGAAGTAAAAAGAGATTGGATTCTAAGGGCA-AAAGACAAAAAATAAAAG-AAAAAAATT-----ATTTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGGTTAGAATTTCATGGCAGAAAGCTATCAGCTTCTTACCTGGGGTACAATATTACTTTAAGTTCACCATAAAAGCTTAGAGAAACTGTTACTGCT-TATGCAGAACATTGTGTTTCTCTAATCATAAATAAGA--CAAGGTTACAGATTACAAACAGTTGTAATGCAACAAGTTTATTATAATAAG-----CTCTTTTATTAACAAGACGTGTAGCACTTTATTAAAATGTATTTTCTCTGCAGTGGTCTAAGAGAACTGGAAATTACTCTCCTTTGTTTATAAATGATGATAGTGATTCATAGAGAGGTGAGATGGT-----TTAGATGGTTTGGGAGCCAGTGTGTTAAAAACTAAACATAGGACCTATTGGGATAGAGCTACC--TTTTATGTGGTTAGAAATGGAAGTTTAAACTATGTGTCAGAGATACTAAGCATTTTATTTTTAAAAACAAAGGGTATCTTTTTTCTTTAAGCAATTGTAGGAAAAGCACGGTGATTCTTGATGAGATGGTAGATTTTCGGAGTGCTAAAAATCTAGacacacacacac--acacacacgcacaagcacacaTCCAAGAA---GTCCAGTTTTAATTATATCTTTCTATAGTCAATG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112835581 858 + 159171411 TATTTTAAAAATAattcaacagacacttactgagcagttactatgtgccagtcactgtgataaatgttgtatatatagcaataaacaaaatagacatcatccttgacctcatgaagtttacagtctggtggaaggacttttcatacatacataacatattattataaattgctgctgttatacattaaaataggaaggacaa--acactgggttctaagggCA-AAAGACAAAAAATAAAAG-AAAAAAATT-----ATGTTGAGGGAAACATTACAAAGGAAACATGGCTTGCAGACCCTCAGGATTAGAATTTCATGGCAGAAGGCTATCAGCTTCTAACCCGGGATAC-CCAATACTTTGAGTTCACCATAAAAGCTTAGAGAA-----------------------------TTTCTCTAATCATAAATAAGG--CAAGGTTACAGATT--AAACAGTTGTAATGTAACAAGTTTATTATAATGAGCTCATCTCTTTTATTAACAAGACTTGCAGTACTTTATTAAAATGTATTTTCTCTGCAGTG--------GACCTGggaattactctcctttgtttataaaggatgatactgagtcatagagaggtgagatgatttgccttagatGGTTTGGGAGTCGATGTGTTAAAAACTAAATATAGGACCTATTGTGATTGAGCTACC--TTTTATGTGGTTAAAAATGGAAGTTTAAACTATGTGTCAGAAATACTGAGCATTTTATTTTTAAAAACAAAGGATA--TTTTTTTGTTAAGCTAATGTAGGAAAAACATGGTGATCCTTGATGAGATGGTAGA------------TAAAAATCTacacagacacacac--acacatacacacacacacac-TACAAGAAGTTGTCCAGTTTTAGTTACATCTTTCTATAGTCAATA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39381509 870 - 61074082 TATTTTAAAAATAatttaatggacgtttattgggcagttcccacgtgccaagcactgtgataaatgttggatacacagcagtgaacaaaatagacatcattcttgctgtcatggaacttggagtctgatggaagg-TTTATTATGC-------ACATATTATTATAAGTTACTGTTGTTATACATTATGGTAG-----AAGA---------GTTTCAAGAGTATAAAAATTATAAGCAGAAG-GAAATTATTTTGACATTTTAAGAAAAACATTACAGAGGA------GTTTGCAGATTCTCA----CATAATTCCATGGCAGAAAGAAATCGCTCTCTTATTTAGAATGCAGTGTTACTTTGAGTCAGGCTTATAAGGCTAGAGAAATTGTTACTGTTCTGTGTAGAATGTTATGTTTCCATAATTACAAATAATATGTAAAGTTATAGATTAGAAACAGTTGTAAAATAATAAGCTTATGATAATAAA--CATCTCTCTTATTGAAAAGATTTGCAACACTTTATTAAAATTTCTTCTCTTTGCCATGGTCTAAGAGACCTGGGAATAACTctcctttgtttgtaaattaagacagtgaatcctagagaggtgagctaatttgccttagatGGCCTGGTGACTAACTTGTTATATAATAAATATAGAACCTATTGAAATTGAGCTACCCTTTTTTTGTGGTTTAACATGTAAGTTTAAAGTATGTGTCAGAGATACTAAACATTTTATTTTTAGAAACAAAGAGCCCCTTTTTCCTTTAAGTGAATGCAGGAAAAGCATGGTGATTCTTGATTAGATGGTAGATTTTCAAGTTGCTGAAAATCTACATACACATACAC--ACA--------------------CAAGAACTTGCCCAGTTTTAATTATA-CTGTCTATAGTCAATG i canFam3.chr9 C 0 I 758 e mm10.chr11 99552993 2440 + 122082543 I a score=987517.000000 s hg38.chr17_JH159146v1_alt 146714 304 + 278131 GAGGGATCTGGGACAGTGCAGATGTAAATCAAAGATTAATAATGAAAAGAGAC----AGAAGCAAAACATGATTATATTGGTCTCTTGCTTGAAATATTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTGAGGAGCCCCTTATGTCTGggtctttgcat---ttctgtcttctctgcctcaccctcttcaatgcattgttcatccagtcattcccaactacctcctgtgg----cttaaagacaccaacctttccgctgcctccatgatttattaagctgctattctgtctggaacaactgttccct s panTro4.chr17 66267215 304 - 82630442 GAGGGATCTGGGACAGTGCAGATGTAAATCAAAGATTAGTAATGAAAAGAGAC----AGAAGCAAAACATGATTACATTGGTTTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTAAGGAGCCCCTTATGTCTGggtctttgcat---ttctgtcttctctgcctcaccctcttcaatgcattgttcatccagtcattcccaactacctcctgtgg----cttaaagacaccaacctctccgctgcctccatgatttattaagctgctattctgtctggaacaactgttccct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24800246 304 - 73212453 GAGGGATCTGGGACAGTGAAGACATAAATCAAAGATTAGTAATGAAAAGAGAC----AGAAGCAAAACACGATTATATTGGTCTCTTGCTTGAAATATTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTAGGGAGCCCCTTATGTCTGggtctttgtat---ttctgtcttctctgcctcaccctcttcaatgcattgttcatccagtcattcccaactacctcctgtgg----cttaaagacaccaacctctctgctgcctccatgatttattaagctgctgttctatctggaacaactgttccct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48022809 304 - 81552678 GAGGGATCTGGGACAGTGAAGACATAAATCAAAGATTAGTAATGAAAAGAGAC----AGAAGCAAAACACGATTATATTGGTCTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTGGGGAGCCCCTTGTGTCTGggtctttgtat---ttctgtcttctctgcctcaccctcttcaatgcattgttcatccagtcattcccatctacctcctgtgg----cttaaaaacaccaacctctccactgcctccatgatttattaagctgctgttctgtctggaacagctgttccct i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53127425 308 + 80904711 GAGGGATCCAGGACAGTGAAGATGTAAATCCAAGATTAATAATGAAAAGAGACAGTTAGAAGCAAAACATGATTATATTGGTCTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTGGGGAGTCCCTTGTGTCTGggtctttgtat---ttctgtcttctctgcctcaccctcttcaatgcattgttcatccggtcattcccaactacctcctgtgg----cttaaaaaccccaacctctttgctgcctccatgatttattaagctgttgttctgtctggaacaactgtttcct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52651660 308 + 80997621 GAGGGATCCAGGACAGTGAAGATGTAAATCCAAGATTAATAATGAAAAGAGACAGTTAGAAGCAAAACATGATTATATTGGTCTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTGGGGAGTCCTTTGTGTCTGGGTCTTTGTAT---TTCTGtcttctctgcctcaccctcttcaatgcattgttcatccggtcattcccaactacctcctgtgg----cttaaaaaccccaacctctttgctgcctccatgatttattaagctgttgttctgtctggaacaactgtttcct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47695021 302 + 74645514 GAGGGATCCAGGACAGTGAAGACGTAAATCCAAGATTAATAATGAAAAGAGACAGTTAGAAGCAAAACATGATTATATTGGTCTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCGGTCCAAACCCCTTTGCTTTGGGGAGTCCCTTGTGTCTGGGTCTTtgtat---ttctgtcttctctgcctCACCCTCTTCAATGCATTGTTCATCCGGTCATTCCCAACTACCT------G----CTTAAAAACCCCAACCTCTTTGCTGCCTCCATGATTTATTAAGCTGTTGTTCTGTCTGGAACAACTGTTCCCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9962201 308 - 75148670 GAGGGATCTGGGACAGTGAAGACGTAAATCCAAGATTAATAATGAAAAGAGACAGTTAGAAGCAAAACATGATTATATTGGTCTCTTGCTTGAAATCTTTCATTGCTTCAAAGTTTCAGTCCAAACCCCTTTGCTTTGGGGAGCCCCTTGTGTCTGGGTCTTTGTAT---TTCTGtcttctctgcctcaccttcttgaatgcattgttcatccggtcattcccaactacctcctgtgg----cttaaaaatgccaacctctttgctgccttcatgatttattaagctgttgttctgtctggaacaactgttccct i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112836439 311 + 159171411 GAGAGATCTGGGACAGTGAAGACATAAGTCAAATATTAATAATGAAAAGAGACAGTTTGAAGCACAACGTGATTGTATCGGTCTCTTGCTTGAAATCTTCCATTGCTTCAAAGTTT-AGTCCAAACCCCTTTGCTTTGGGGAATCCCTCATGTCCAGGTCTTAGTAT---TTCTGTCTTCTCTGCCTCACCCTCTTCAATGCATTGTTCATTCAGTCATTCCCAACTACCTCCTGTGGCTTACTTAAAAACACCAACCCGTCAACTGCCTCCATGATTTATGAAGCTGCTGTTCTGTATGGAACAAGTGTTCCCT i calJac3.chr5 C 0 I 116 s canFam3.chr9 39383137 252 - 61074082 GGGGTATCGGTGATAGTGAAGACATAAATTGAAAGTTGATAATAAGAAGAAAC----------AAAATATGATTG--TTAGTTTCTTGCTTCAAATCTCTCTTTGCTTATAGGTTTTAGTCTTAAAGCCCTTGGCTTAGGGAGCCCC-AACCTTAGGGTCTCTGCATTTCTTCTTTCCTCCTCCCCTTACCCTCTTCTCTCCATTTTCAGTGC------------------------G----CTCAA----------------------TCCATGAGTTAGTAAGCTGCTGTTGTGTCTGGAACAGCACCCTCCC i canFam3.chr9 I 758 C 0 e mm10.chr11 99552993 2440 + 122082543 I a score=575490.000000 s hg38.chr17_JH159146v1_alt 147018 205 + 278131 ----------acctctcctgctgcctattcatcttttaaagcttagactggatagctcagaggctttccgtagctatttctcacctttgacactgaatcaccaaatcagggttttagttattctttctgtatgcttgcatgccatgctgctcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttattatgat---aacttgtctttctt s panTro4.chr17 66267519 205 - 82630442 ----------acctctcctgctgcctattcatcttttaaagcttagactggatagctcagaggctttccgtagctatttctcacctttgacactgaatcaccaaatcagggttttagttattctttctgcatgcttgcatgccatgctgctcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttattatgat---aacttgtctttctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24800550 205 - 73212453 ----------acctctcctgctgcctattcatcttttaaagcttagactggatagctcagagactttccataactatttctcacctttgacactgaatcaccaaatctgggttttagttattctttctgtatgcttgcatgccatgctgctcacctcccagtcacggca-gaatccctcagcattgcaatta------------------------------ttacgattat---aacttgtctttctc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48023113 205 - 81552678 ----------acctctcctgctgcctattcatcttttaaagcttagagtggatagctcagaggctttccataactatttcgcacctttgacactaaatcaccaaatctgggttttagtcattctttctgtatgcttgcatgccatgctgctcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttttgattat---aacttgtctttctc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53127733 205 + 80904711 ----------acctctcctgctgcctattcatcttttaaagcttaggctggataactcagaggctttccataactatttctcacctctgacactgaatcaccaaatctgggttttagttattctttctgtatgcttgcatgccatgctgttcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttgtgattat---aacttgtctttctc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52651968 205 + 80997621 ----------acctctcctgctgcctattcatcttttaaagcttaggctggataactcagaggctttccataactatttctcacctctgacactgaatcaccaaatctgggttttagttattctttctgtatgcttgcatgccatgctgttcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttgtgattat---aacttgtctttctc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47695323 205 + 74645514 ----------ACCTCTCCTGCTGCCTATTCATCTTTTAAAGCTTAGGCTGGGTAACTCAGAGGCTTTCCATAACTATTTCTCACCTCTGACACTGAATCACCAAATCTGGGTTTTAGTTATTCTTTCTGTATGCTTGCATGCCATGCTGTTCACCTCCCAGTCACAGCA-GAATCCCTCAGCATTGCAATTA------------------------------TTGTGATTAT---AACTTGTCTTTCTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9962509 205 - 75148670 ----------acctctcctgctgcctattcatcttttaaagcttaggctggataactcagaggctttccataactatttctcacctctgacactgaatcaccaaatctgggttttagttattccttctgtatgcttgcatgccatgctgttcacctcccagtcacagca-gaatccctcagcattgcaatta------------------------------ttgtgattat---aactcgtctttctc i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39383389 242 - 61074082 ACACACACACACCACCTCTCCTGCCTTGTCATCTTTCAATGCTTAGCCTGGAGAGCTCAGAGGCTTTCCATAACTCTCCCTC-CCCCTGACACTGAATCACCAAATCTGGG-----ATTAGTTCCTCTGTGTGCTTGCATGCCTTGCTGCTCACA-CCTTGTCACGGCAGGAACCACATGGCATTATAAATATATTCATACACTGTATGTAGAACACATGTGttgtgattataacaacttatctgtttt i canFam3.chr9 C 0 I 183 e mm10.chr11 99552993 2440 + 122082543 I e calJac3.chr5 112836750 116 + 159171411 I a score=1604475.000000 s hg38.chr17_JH159146v1_alt 147223 594 + 278131 cttcactagatttgggagagacttgagggcacttgagacttgaggtaatagcatttcttttatctttttactcctggcatcaatatgatgcctgacatagggcaaacactcaggaaata-tggacaaatgaatgagtGAATGGACTAGATCTCTTGTTGACAATATCCTCTGTAGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATCCCGTGAGAAATTTCTCTCTCAAGACACTAACAGGTACATTGAGGACATTTTAAAACAAGTTTGTTAAAAAGCATTTGCTTCTCCCCTTCCTTGT-------------CCTACTCTGTTTCTTGCATGTCTTCTTGTGGTTTTATTTCAATGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatacatacacacatatatttatatgtgt-tacataaatgtattggatgtattatatatataatatata------------CTTGTTCTCT---CTAGGCTTGGAAAAGAAAAATCTTCATGAGATAAAATTAAGTAGGTTGATAAAATTAAGTA----------ACGAATTAAAGCATACGTAATCAGAGT s panTro4.chr17 66267724 594 - 82630442 cttcactagatttgggagagacttgagggcacttgagacttgaggtaatagcatttcttttatctttttactcctggcgtcaatatgatgcctgacatagggcaaacactcaggaaata-tggacaaatgaatgagtGAATGGACTAGATCTCTTGTTGACAGTATCCTCTGTAGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATTCCGTGAGAAATTTCTCTCTCAAGAGACTAACAGGTACATTGAGGACATTTTAAAACAAGTTTGTTAAAAAGCATTTGCTTCTCCCCTTCCTTGT-------------CCTACTCTGTTTCTTGCATGTCTTCTTGTGGTTTTATTTCAATGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatacatacacacatatatttatatgtgt-tacataaatgtattggatgtattatatatataatatata----------taCTTGTTCTCT---CTAGGCTTGGAAAAGAAAAATCTTCATGAGATAAAATTAAGTAGGTTGATAAAATTAAGTA----------ACGAATTAAAGCATATGTAATCAG--T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24800755 593 - 73212453 cttcaccagatttgggagagacttgagggcacttgagacttgacgtaatagcatttcttttatctttctactcctggcattaatataatgcctgacacagggcaaacactc-ggaaata-tggacaaatgaatgagtGAATGGACTAAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCCATGGCTGCTAAGTTCTATTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATCCCGTGAGAAATTTCTCTCTGAAGAGACTAACAGGTACATTGAGGACATTTTAAAACAAGTTTGTTAAAAAGCATTTGCTTCTCCCCTTCCTTGT-------------CCTGCTCTTTTTCTTGCATGTATTCTTGTGGTTTTATTTCAATGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatacgtacacacatatatttatatgtgt-tacataaatgtattggatgtattatatatataatatata----------taCTTGTTCTCT---CTAGGCTTGGAAA--AAAAATCTTCATGAGATAAAATTAAGTAGGTTGACAAAATTAAGTA----------ACGAATTAAAGCATATTTAATCAGAGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48023318 596 - 81552678 cttcgccagatttgagagagacttgagggcacttgagacttgaggtaatagcatttcttttatctttctactcctggcattaatatgatggctgacacagggcaaacactcaggaaata-tggacaaatgaatgagtGAATGGACTAAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCTATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATAGAATCCCGTGAGAAATTTCTCTCTGAAGAGACTAACAGGTACATTGAGGACATTTTAAAACAAGCTTGTTAAAAAGCATTTGCTTCTCCCCTTCGTTGT-------------CCTACTCTTTTTCTTGCATGTATTCTTGTGCTTTTGTTTCAATGCATTTTCAGATTTTGACTTGtatctttatatatatatattgtgtatagatatac--acacacatatatttatatgtgt-tacataaatgtattggatgtattatatatataatatatg----------taCTTGTTCTTT---CTAGGCTTGGAAAAGAAAAATCTTCATGAGATAAAATTAAGTTGGTTGATAAAATTAAGTA----------ATGAGTTAAAGCATATTTAATCAGAGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53127938 606 + 80904711 cttcatcagatttgggagagacttgagggcactagagacttgaggcaatagcatttcttttatctttctactcctggcgttaatgtgatgcctgacacaggataagcactcaggaaata-tggacaaatgaatgagtGAATGGACTGAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATCCCCTGAGAAATTTCTTTCTGAAGGGACTAACAGGTACATTGAGGACATTTTAAAACAAGCATGCTTAAAAGCATTTTCTTCTCCCCTTGCTTGT-------------CCTCCTCTTTTCCTTGCATGTATTCTTGTGGTTTTATTTCAAGGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatgcatgcacacatatatttatatgtgt-tacataaatgtattggatgtattatatatatagtatatatacatatatgtaCTTGTTCTCT---CTAGGCTTGGAAAAGAAAAATCTTTGTGAGATAAAATTAAGTAGGCTGATAAAATTCAGTA----------ATGAATTAAAGCATATTTAATCAGAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52652173 606 + 80997621 cttcatcagatttgggagagacttgagggcactagagacttgaggcaatagcatttcttttatctttctactcctggcgttaatgtgatgcctgacacagaataagcactcaggaaata-tggacaaatgaatgagtGAATGGACTGAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATCCCCTGAGAAATTTCTTTCTGAAGGGACTAACAGGTACATTGAGGACATTTTAAAACAAGCATGCTTAAAAGCATTTTCTTCTCCCCTTCCTTGT-------------CCTCCTCTTTTCCTTGCATGTATTCTTGTGGTTTTATTTCAAGGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatgcatgcacacatatatttatatgtgt-tacataaatgtattggatgtattatatatatagtatatatacatatatgtaCTTGTTCTCT---CTAGGCTTGGAAAAGAAAAATCTTTGTGAGATAAAATTAAGTAGGCTGATAAAATTCAGTA----------ATGAATTAAAGCATATTTAATCAGAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47695528 605 + 74645514 CTTCACCAGATTTGGGAGAGACTTGAGGGCTCTAGAGACTTGAGGCAATagcatttcttttatctttctactCCTGGCGTTAATGTGATGCCTGACACAGGATAAGCAGTCAGGAAATA-tggacaaatgaatgagtgaatggactGAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTGTGGAATCccctgagaaatttctttctgaagGGACTAACAGGTACATTGAGGACATTTTAAAACAAGCGTGCTTAAAAGCATTTACTTCTCCCCTTCCTTGT-------------CCTACTCTTTTCCTTGCATGTATTCTTGTGGTTTTATTTCAATGAATTTTCAGATTTTGACTTGtgtctt--tatatatgtattatgtatagatatacatgcacacatatatttatatgtgt-tacataaatgtattgaatgtatta-atatatagtatatatacatatatgtacttgTTCTCT---CTAggcttggaaaagaaaaatctttgtgagATAAAATTAAGTAGGCTGATAAAATTCAGTA----------ATGAATTAAAGCATATTTAATCAGAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9962714 604 - 75148670 cttcaccagatttgggagagacttgagggcactagagacttgaggcaatagcatttcttttatctttctactcctggcgttaatgtgatgcctgacacaggataagctctcaggaaata-tggacaaatgaatgagtGAATGGACTGAATCTCTTGTTGACAGTATCCTCTGTTGTGTCCCATAGACTCCATGGCTGCTAAGTTCTGTTCATTTAAGGTTGAGCTGTAAAAAGCCTATGGAATCCCCTGAGAAATTTCTTTCTGAAGGGACTAACAGGTACATTGAGGACATTTTAAAACAAGCGTGCTTAAAAGCATTTTCTTCTCCCCTTCCTTGT-------------CCTACTCTTTTCCTTGCATGTATTCTTGTGGTTTTATTTCAAGGCATTTTCAGATTTTGACTTGTGTCTT--tatatatgtattgtgtatagatatgcatgcacacatatatttatatgtgt-tacataaatgtattggatgtatt--atacatagtatatatacatatatgtaCTTGTTCTCT---CTAGGCTTGGAAAAGAAAAATCTGTGTGAGATAAAATTAAGTAGGCTGATAAAATTAAGTA----------AGGCATTAAAGCATATTTAATCAGAGT i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39383814 600 - 61074082 tctcaccagatatgaaagaaacttgagagc-------actctaggtaataacatttcttttatctttatacttctagcacagatatggtgcctggcataggggaagcactcgtgaaatattggccaaacaaatgagtGGATATACTAAATCCCTTATTGGCAGTATTGTAGGTTGTGTTCCATGTGCCCTGTGGCTGCTAAGTTCTCTTCATTCA-----GACCACTAACAAGCCTGTGAGATCCTCTGAGAAATCCCTCTCTGGAGAGACTGGCAGGCACACTAAGGGCATTTAGAAACATGTTTATTGAAAGGCATTTACTTCGTCCCTTCCTTGCTTCCTTGCCCTGACTTTTTTTTTTTTTTGCATATATTCTTTCAGTTTTAGCTCAATGT-TTTTCAGATTTTGACTTGTGCTTT--tgtatatgaatgacacatatatacat---tatacatgta-ttatacatgtatacat-----catgatatgtgttaaatatatattatata------------ggtatTCTCTAAGTAAGGTTGGAAAAAGGATAATTTGCTCAAGATAAAATTAAGTAGGTTGGTAAAAATAAGTAAAATTAAGGCATAGATTAAATCATGTTTAATCAAGAC i canFam3.chr9 I 183 C 0 e mm10.chr11 99552993 2440 + 122082543 I e calJac3.chr5 112836750 116 + 159171411 I a score=653637.000000 s hg38.chr17_JH159146v1_alt 147817 213 + 278131 TTTAGCTCTCAACCTGAGAC----ACCTGAAAAGTAT-TGGCATTCTATTGATTACTGTGGTAGAACATCTGTGCTGAGTATGGTGGCAAATAAAG-GTATGTCCCTGGTGCCTTGTTACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAAATGAAGTTGAAATAGGTACACCTTCAAAAT-GCCCAGATTTTAGAATTGAATACTTGCCAATTTT s panTro4.chr17 66268318 213 - 82630442 TTTAGCTCTCAACCTGAGAC----ACCTGAAAAGTAT-TGGCATTCTATTGATTACTGTGGTAGAACATCTGTGCTGAGTATGGTGGCAAATAGAG-GTATGTCCCTGGTGCCTTGTTACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAAATGAAGTTGAAATAGGTACACCTCCAAAAT-ACCCAAATTTTAGAATTGAATACTTGCCAATTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24801348 213 - 73212453 TTCAGCTCTCAACCTGAGAC----ACCTGAAAAGTAT-TGGCATTCTATTGATTACTGTGGTAGAACATCTGTGCTGAGTATGGTGGCAAATAGAG-GTATGTTCGTGGTGCCTTGTTACTAGAGTCGACCACTTTGAGTTCTCTCTAAG-------------AGAAAATGAAGTTGAAATAGGTACACCTCCAAAAT-ACCCAGATTTTAGAATTGAATATCTGCCAATTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48023914 213 - 81552678 TTTAGCTCTCAACCCGAGAC----ACCTGTAAAGTAT-TGGCATTCTATTGATTACTGTGGTAGAACATCTGTGCTGAGTATGGTGGCAAATAGAG-GTATGTTCCTGGTGCCTTGTTACTAGAGTTGACCACTTTGATTTCTCTCTAAG-------------AGAAAATGAAGTTGAAATAGGTACACCTCCAAAAT-ACCCAGATTTTAGAATTGAATACTTGCCAATTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53128544 213 + 80904711 TTTAGCTCTTAACCTGAGAC----ACCTGAAAAGTAT-TAGCATTCTATTGATTACTGTGGTAGAACATCTGTGCAGAGTACGGTGGCAAATAGAG-GTATATTCCTGGTGCCTTGTGACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAGATGAAGATGAAATAGGGACACCTCCAAAAT-ACCCAGATTTTAGAATTGAATACTTGCCAATTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52652779 213 + 80997621 TTTAGCTCTTAACCTGAGAC----ACCTGAAAAGTAT-TAGCATTCTATTGATTACTGTGGTAGAACATCTGTGCAGAGTACGGTGGCAAATAGAG-GTATATTCCTGGTGCCTTGTGACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAGATGAAGTTGAAATAGGGACACCTCCAAAAT-ACCCAGATTTTAGAATTGAATACTTGCCAATTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47696133 213 + 74645514 TTTAGCTCTTAACCTGAGAC----ACCTGAAAAGTAT-TGGCATTCTATTGATTACTGTGGTAGAACATCTGTGCAGAGCACAGTGGCAAATAGAG-GTATATTCCTGGTGCCTTGTGACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAGATGAAGTTGAAATAGGTACACCTCCAAAAT-ACCCAGATTTTAGAATTGAATACTTGCCAATTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9963318 213 - 75148670 TTTAGCTCTTAACCTGAGAC----ACCTGAAAAGTAT-TAGCATTCTATTGATTACTGTGGTAGAACATCTGTGCAGAGTACGGTGGCAAATAGAG-GTATGTTCCTGGTGCCTTGTGACTAGAGTTGACCACTTTGAGTTCTCTCTAAG-------------AGAAGATGAAGTTGAAATAGGGACACCTCCAAAAT-ACCCAGGTTTTAGAATTGAATACTTGCCAATTTT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99555433 191 + 122082543 TTTAGCTCTCAATCTGTCAT----CCC---AGAGCATCTGATATCCTATTGACTACTGGACTATCACCTCTGTGATAACAGGGGGGGCAAACAAAGCATGTGTTT---GTGTCCTGATGCTAGAGTTGACCATTCTGAGT--TCTGTAAG-------------CAAAAATGAGATTGAAGTG-----------------ACCCAGCTCTTACAGCTGAATATTTGTCAATTTT i mm10.chr11 I 2440 C 0 s canFam3.chr9 39384414 229 - 61074082 TCTAGCTCTACTTCTTAGCTCATGACCTGAAGAGTTT-TGGCATTTTGTTGATCACTGAGGTTGAACTTCTGTGCAGAGGATGGTGGCAAGTAGAG-ATATATTCCTAGTGCCCTGATTCTAGAGTTT-CCACT-TAAATTCTCCTTAAGGGAAAGTGAAGTCAAAAAGTGAAGTCAAAATTGGTAGGCCCACTAAATGACCCAGATCTTAGAACTGAATATCTGCTACTttt i canFam3.chr9 C 0 I 207 e calJac3.chr5 112836750 116 + 159171411 I a score=1397280.000000 s hg38.chr17_JH159146v1_alt 148030 513 + 278131 AATCTATGAACCAATGTACTCTTTTTCTATTATAATCCGATGT--G--GATTTTGTTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCATATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCTGGTTTCATTAGTATTGAAGGTTCTAtgatgtggtaggaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaattaactttatgactttcagaatgttgaataac--gcttaaaacttca-ttttttcttatcCATTAGTGCTGTTTTAAGGACTAAATCAA---------TAATTTAC-TGGTGAAGAGTAGATAAATAAATGTTGGTTCACACCAAAATTGCACTTGTCTGAGGAAGAAGAGAGAAGAGAAGGCAAACATGAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATGTTAGTAG--TAGCAAGAATGTTA--GTCATTCTG-----CCAATAGAGTCTTCTTTAAAAGATTAAAATAATCATCCTGTTTTTACCTTTT----------------------------------------------------TAAA s panTro4.chr17 66268531 565 - 82630442 AATCTATGAACCAATGTACTCTTTTTCTATTATAATCCGATGT--G--GATTTTGTTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCATATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCTGGTTTCATTAGTATTGAAGGTTCTAtgatgtggtaggaaaaattgggctttagagtcagacatacaggaggctgaattctgattttctaagtaattaactttatgactttgagaatgttgaataac--tcttaaaacttca-ttttttcttatcCATTAGTGCTGTTTTAAGGACTAAATCAA---------TAATTTAC-TGGTGAAGAGTAGATAAATAAATGTTGGTTCACACCAAAATTGCATTTGTCTGAGGAAGAAGAGAGAAGAGAAGGCAAACATGAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATGTTAGTAG--TAGCAAGAATGTTA--GTCATTCTG-----CCAATAGAGTCTTCTTTAAAAGGTTAAAATAATCATCCTGTTTTTACCTtttatttatttatttatttttttattATACTTTAAGTTTCCTGTTTTTACCTTTTTAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24801561 512 - 73212453 AATCTATGAACCAATGTACTCTTTTTCTGTTATAATCCAATGT--G--GATTTTGTTAAAGAATGTTACATGTTTT--------------A-TTTCTCTT---GCATATTTTGGGTTTATTTCACAACTGTGCTCATTAAGCTTCTGGTTTCATTAGTATTGAAGGTTCTAtgatgtggtaggaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaattaactttatgactttgagaatgttgaataac--tcttaaaacttaa-ttttttcTTA-CCATTAGTGCTGTTTTAAGGACTAAATGAA---------TGATTTAC-TAGTGAAGAGTAGATAAATAAATGTTGGTTCACACCAAAATTGCATTTGTCTGAGGAAGAAGAGAGAAGAGAAGGCAAACATAAAAGAGAACCTGTTAA-AAGTTAGCAAGGCGTGTTAGTAG--TAGCAAGAATGTTA--GTCATTCTG-----CCAATAGAGTCttttttaaaaaattaaaataatCATCCTATTTTTACCTTTT----------------------------------------------------TAAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48024127 512 - 81552678 AATCTATGAACCAATGTACTCTTTTTCCATTATAATCCAATGT--A--GATTTTATTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCATATTTTGGGTTTATTTCATAAC--TGCTCATTAAGCTTCTGGCTTCATTAGTATTGAAGGTTCTAtgatgtgctaggaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaattaactttatgactttgagaatgttgaataac--tcttaaaacttcatttttttcttatccgtTAGTGCTGTTTTAAGGACTAAATGAA---------TGATTTAC-TAGTGAGGAGTAGATAAATAAATGTTGGTTCACGCCAAAATTGCATTTGTCTGAGGAAGAAGAGAGAAGAGAAGGCAAACATAAAAGAGAACCTGTTAA-AAGTTAGCAAGGCATGTTAGTAG--TAGCAAGAATGTTA--GTCATTCTG-----CCAATAGAGTCCTTTTTAAAAAATTAAAATAATCATCCTATTTTTACCTTTT----------------------------------------------------TAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53128757 510 + 80904711 AATCTATGAACCAATGTACTCTTTTTCTATTATAATACAATGT--G--GATTTTGTTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCGTATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCTGGCTTCATTAGTATTGAAggtagtat--tgtggtaggaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaagtaactttatgactttgagaatgttgaataac--tcttaaaacttca-tttattcttgtcCATTAGTGCTGTTTCAAGGACTAAATGAA---------TGATTTAC-TAGTGAAGAGTAGACAAATAAATGTTGGTTCACACCAAAATTACATTTGTCTGAGGAGGAAGAGAGAAGAGAAGGCAAATATAAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATATTAGTAG--TATCCAGAATGTTA--GTCATTCTG-----CCAATAGATTCttttttaaaaaattaaaataatCATCTT-TTTTTACCTTTT----------------------------------------------------TAAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52652992 510 + 80997621 AATCTATGAACCAATGTACTCTTTTTCTATTATAATACAATGT--G--GATTTTGTTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCGTATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCCGGCTTCATTAGTATTGAAggtagtat--tgtggtagtaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaagtaactttatgactttgagaatgttgaataac--tcttaaaacttca-tttattcttgtcCATTAGTGCTGTTTCAAGGACTAAATGAA---------TGATTTAC-TAGTGAAGAGTAGACAAATAAATGTTGGTTCACACCAAAATTACATTTGTCTGAGGAGGAAGAGAGAAGAGAAGGCAAATATAAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATATTAGTAG--TATCCAGAATGTTA--GTCATTCTG-----CCAATAGATTCTTTTTTAAAAAATTAAAATAATCATCTT-TTTTTACCTTTT----------------------------------------------------TAAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47696346 510 + 74645514 AATCTACGAACCAGTGTACTCTTTTTCTATTATAATCCAATGT--G--GATTTTGTTAAAGAAtcttacatgtttt--------------a-tttctctt---gcgTATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCTGGCTTCATTAGTATTGAAGGTAGTAT--TGTGGTAGGAAAAATTGGGCTTTAGAGTCAGACATACAAGAGGCTGAATTCTGATTTTCTAAGTAAGTAATTTTATGactttgagaatgttgaataaC--TCTTAAAACTTCA-TTTATTCTTATCCATTAGTGCTATTTTAAGGACTAAATGAA---------TGATTTAC-TAGTGAAGAGTAGACAAATAAATGTTGGTTCACACCAAAATTACATTTGtctgaggaggaagagagaagagaaggcaaATATAAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATGTTAGTAG--TATCCAGAATGTTA--GTCATTCTG-----CCaatagattcttttttaaaaaattaaaataatcatctt-tttttacctttt----------------------------------------------------taaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9963531 510 - 75148670 AATCTACGAACCAATGTACTCTTTTTCTATTATAATCCAATGT--G--GATTTTGTTAAAGAATCTTACATGTTTT--------------A-TTTCTCTT---GCGTATTTTGGGTTTATTTCATAACTGTGCTCATTAAGCTTCCGGCTTCATTAGTATTGAAggtagtat--tgtggtaggaaaaattgggctttagagtcagacatacaagaggctgaattctgattttctaagtaagtaactttatgactttgagaatgttgaataac--tcttaaaacttca-tttattcttgtcCATTAGTGCTGTTTCAAGGACTAAATGAA---------TGATTTAC-TAGTGAAGAGTAGACAAATAAATGTTGGTTCACACCAAAATTACATTTGTCTAAGGAGGAAGAGAGAAGAGAAGGCAAATATAAAAGAGAACCTGTTAA-AAGTTAGCAAGCCATGTTAGTAG--TATCCAGAATGTTA--GTCATTCTG-----CCAATAGATTCTTTTTTACAAAATTAAAATAATCATCTT-TTTTTACCTTTT----------------------------------------------------TAAA i chlSab2.chr16 C 0 C 0 s mm10.chr11 99555624 469 + 122082543 GATT--AGAGCCGATTTACCCCCTTTCAGTCAAAATTGGACATCAT--GATTTTGTTGAGGAATCTTACatttttttttttcatttttaaa-ttttttttCAGGTATGTTTTGAATCTGTGTCAAAGC--TGCTGACT-AGTTTCTTCTTTTCTTTGTATTCgaggctttgtgatgtgg--gaaagaattggtcttttgagtcagacacgccaggggttaaattctgcttgccttagtaattaactctataatattgagaacatttaaTAACAAACCGACAACGT-A-TCCCATATCATTATATAGTGTTGTTTTGAGGATTTGATGA-------------------------------------------------------------------GTTTGAG-----AGAAAGGAGAGAAGATGGACAGTAAAGA----CTGATAACAAATCAGGAAGGCGAGCTAGCAAGCTCGCTCTGGTGCTGCCTTCATTTTGAACCTTCAATtaataataataataataataataataataatgataaagataatCTAT----------------------------------------------------TAA- i mm10.chr11 C 0 C 0 s canFam3.chr9 39384850 494 - 61074082 AATCTGTGAGCCAATAGATCCTTTTTTTATTACAATCAGATAT--GATGATTTTGCTAAAGATTCTTACATTTAAA--------------ATTTTTTCTT---GCATGTCTTAAGTTGATGTCCTACC--TGTTCACTCAACTTCTGGCTC--TTAGTATTGgaggctctgtcatttggtagaaagaattgggctttaaagtcaaacatatgaagacctgaattctggatttcttactaagtaact--------ttgagaatgttgagcaat--tcttacagcttca-ttt-ttctcatctatgaGTGATGTTTTAAGGATTATGTGAATTAATAATGTGATTTACGCAGCAAAATATAGGTAAATAAATACTGTCTCACCTCCAAATTGTATTTGGGTGAGGAAAAGGGGAG-----------AACATAAAAGATAACCAATTTG-AAGTTAGGAAGCC----TAGGAAGCTAGCTAG--TTCCA--ATCATTCTT-----CTAAT-----CAGTTAAAAAAAAATAAAATAATCATCTTATCTTTACCTTTT--------------------------------------------------TTTAA- i canFam3.chr9 I 207 C 0 e calJac3.chr5 112836750 116 + 159171411 I a score=2311919.000000 s hg38.chr17_JH159146v1_alt 148543 565 + 278131 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAATGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAACCCACCAAGAAATTTT----CT-T--CTATGAAAATACCCAGTACAAGAAACAAGAGCCAGGAAGCAATATGA-TCAAGAACATGTAATCTGAGGTCTTAAAGATTGAAACAGTATTTTGCTAATAAAACTCATTCACCTGCCCACAGGAACCAAATGGTTTTTCAGCTAAATAACCATAAAAAATACTTTTCTTTTTTTCCCCCATTAAAACCAAAGGTAAGTTCTTCATATC-TGGGTCATCTGGTCTACCTTAACATCTGGCAAACTACTGAGGCAAGTGAATACTGAAGGGACAGCTTCTGGATTCTTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCCGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAG s panTro4.chr17 66269096 565 - 82630442 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAATGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAACCCACCAAGAAATTTT----CT-T--CTATGAAAATACCCAGTACAAGAAACAAGAGCCAGGAAGCAATATGA-TCAAGAACATGTAATCTGAGGTCTTAAAGATTGAAACAGTATTTTGCTAATAAAACTCATTCACCTGCCCACAGGAACCAAATGGTTTTTCAGCTAAATAACCATAAAAAATACTTTTCTTTTTTTCCCCCATTAAAACCAAAGGTAAGTTCTTCATATC-TGGGTCATCTGGTCTACCTTAACATCTGGCAAACTACTGAGGCAAGTGAATACTGAAGAGACAGCTTCTGGATTCTTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24802073 564 - 73212453 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAATGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAACCCACCAAGAAATTTT----CT-T--CTATGAAAATACCCAATATAAGAAACAAGAGCCAGGAAGCAATATGA-CCAAGAACATGTAATCTGAGGTCTTAAAGATTGAAACAGTATTTTGCTAATAAAACACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAAGCATAAAAAATACTTTTC-TTTTTTCCCCCATTAAAACCAAAGGTAAGTTCTTCATATC-TTGGTCATCTGGTCTACCTTAACATCTGGTAAACTACTGAGGCAAGTGAATACTGAAGAGACAGCTTCTGGATTCTTCGTTGTCGGGCACTGAGCAAAGTAGCCATCTAC---CAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAAGTGGTGAGGTTGAGGGTCTCCAGACCTGGAGTTGGCCGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACACAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAG i ponAbe2.chr17 C 0 M 207 s nomLeu3.chr19 48024639 562 - 81552678 ATGGAAGAAATATACTCAAA--ACT-AAC--AAAAAAATGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAACCCACCAAGAAATTTT----CT-T--CTATGAAAATACCCAGTACAAGAAACAAGAGCCAGGAAGCAATATGA-TCAAGAACATGTAATCTGAGGTCTTAAAGATTGAAACAGTATTTTGCTAATAAAACACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAAGGATAAAAAATACTTTTC-TTTTTTCCCCCATTAAAACCAAAGGTAAGTTCTTCATATC-TGGGTCAACTGGTCTACCTTAACATCTGGTAAACTACTGAGGCAAGTGAATACTGAAGAGACAGCTTCTGGATTCTTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAGCAGCCTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGACCTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53129267 563 + 80904711 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAAGGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAAACCACCAAGAAATTTT----CT-T--CTATGGAAATACCCAATACAAGAAACAAGAGCCAGGAAGCAGTATGA-TCAAGAACATGTAATCTGAGGTCTTACAGATTGAAACAGTAGTTTGCTAATAAA--ACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAACCATGAAAAATACTTTTCTTTTTTCCCGCCATTAAAACCAAAGGTAAATTCTTCATATC-TGGGCCATCTGATCTGCCTTAACATCTGGTAAACTACTGAGGCAAGTGACTACTGACGAGACAGCTTCTGGATTCCTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGCCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGGGTTGGCTGGCAGGAATTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52653502 563 + 80997621 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAAGGACACATCTTGCCAGAGAAATATAGTTTATTGGAAAAACCACCAAGAAATTTT----CT-T--CTATGGAAATACCCAATACAAGAAACAAGAGCCAGGAAGCAGTATGA-TCAAGAACATGTAATCTGAGGTCTTACAGATTGAAACAGTAGTTTGCTAATAAA--ACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAACCATGAAAAATACTTTTCTTTTTTCCCGCCATTAAAACCAAAGGTAAATTCTTCATATC-TGGGCCATCTGATCTGCCTTAACATCTGGTAAACTACTGAGGCAAGTGACTACTGACGAGACAGCTTCTGGATTCCTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGGGTTGGCTGGCAGGAATTGAGCAGGAAGCAGGTAGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47696856 565 + 74645514 atggaagaaatatacCCAAA--ACT-AACATAAATAAAGGACACGTCTTGCCAGAGAAATATAGTTTATTGGAAAAACCACCAAGAAATTTT----CT-T--CTATGGAAATACCCAATACAAGAAACAAGAGCCAGGAAGCATTATGA-TCAAGAACATGTAATCTGAGGTCTTACAGATTGAAACAGTATTTTGCTAATAAAACACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAACCgtgaaaaatacttttcttttttccccccattaaAACCAAAGGTAAATTCTTCATATC-TGGGCCATCTGATCTACCTTAACATCTGGTAAACTACTGAGGCAAGTGACTACTGAAGAGACAGCTTCTGGATTCCTCGTTGTCGGGCACTGAGCAAAGTAGCCATCCAT---CAgcagcttcttgggaggcaggG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGGGTTGGCTGGCAGGAATTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9964041 565 - 75148670 ATGGAAGAAATATACCCAAA--ACT-AACATAAACAAAGGACACATCTTGCCAGAGAAATATAGTTTATTTGAAAAACCACCAAGAAATTTT----CC-T--CTATGGAAATACCCAATACAAGAAACAAGAGCCAGGAAGCAGTATGA-TCAAGAACATGTAATCTGAGGTCTTACAGACTGAAACAGTATTTTGCTAATAAAACACATTCACCTGCCCACAGGAACCAAATGGTTATTCAGCTAAATAACCATGAAAAATACTTTTCTTTTTTCCCCCCATTAAAACCAAAGGTAAATTCTTCATATC-TGGGCCATCTGATCTACCTTAACATCTGGTAAACTACTGAGGCAAGTGACTACTGAAGAGACAGCTTCTGGATTCCTCGTTGTCGGGCACTGAGCGAAGTAGCCATCCAT---CAGCAGCTCCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAGGTGGTGAGGTTGAGGGTCTCCAGGCCTGGAGTTGGCTGGCAAGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTAGCAGGGTGGGGGACAGTTGTCACAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112836866 572 + 159171411 ATGGAAGAAATATACCCAAA--ACT-AACATAAGCAAAGGACACATCTTGCCAGAGAAATAAAGTTTATTGGAAAACCCGCCAAGAAATTCTTTTGCC-T--CTATGAAAATACCCAATACAAGAAATAAGAGCCAGGAAGCAATGTGA-CCAAGAACAGATATTCTGAGGTCTTAAAGATTGAAACAGTATTTTGCTAATAAAACACATTCACCTGCCTACATGAACCAAATCGTTATTCAGCTAAATAACCATAAAAATTCTTGGGTTTTTTTCCCTCCATTAAAACCAAAGGTAAGTTCTTCATATC-TGGGCCATCTGGTCTACTTAAACATCTGGTAAACTACTGAGGCAAGTGAATACAGAAGAGATAGCTTCTGGGTTCTTCATTGTCGGGCACTGAGCAGGGTAGCCATCCATCAGCAGCAGCTTCTTGGGAGGCAGGG---CTCACAGCAGGGCTGAGTGAAAGTGGTGAGGTTGAGAGTCTCCAGATTTGGAGTTGGCTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACGCAGGGCTGAGGAATGTGGCAGGGTGGGGGACAGTTGTCACAG i calJac3.chr5 I 116 C 0 s mm10.chr11 99556093 567 + 122082543 --ACAAGAAATGTGTCCCAAATACT-AACATAAATAAAGAACACTTATGGCCAGGGAAATACAATTTATTAGAAAACCCATCAGGAGATTAT----TT-TGCCTCTGAAAATACTCAATACAGAAAATGAGATCCCAGAAGCAACATGGCCCAAACCCCCATAGTTTGAAATCTTAAAGATTTCAATAGCACTTTCATAATGGAAGATGTTCACCTGTTGAAATCAGTCAAATGGCTATTCATCCGGATCA-CATAAGCAAAACCTTGATTTCTTGCCC---TTAAAAATAAAAGTAGGGTTTCCATGGCTTAGGTCATCTG-CCTATTTTAACATTGTGAAAACTATTGAGACAAGCAGGTGGTGGTTGGGCAGTTCCTGGGGTTTTCAGTATGAGGCGTCAAGCAAGGGAGCCACAGGT---CAGCAGCACCTTGGGACACAGGGCTCCTCACAGCCTGGCTGCACATAGGTGGTGAGGTTGACAGTCAGCAGGTCTGGGGTTGGGTGGCAGGAGTTGAGCAGGAAGCAGGTGGGCACACAGGGCTGAGGGATGTGGCAGGGTGGGGGGCAGTTGTCACAG i mm10.chr11 C 0 C 0 s canFam3.chr9 39385344 563 - 61074082 ATTAAAGAAATATACCAAAA--AATGAATGTACACAAACAACATATCTTGCCAGAGAAAT--AGTTTATTGGAAAACCCATCAAGAATTTTT----TTCT--CTATGAAAATATCCAGTATAAGAAATAGGATCCAAGAAGCAACATGA-CCAAGAAAATATAGTCAGAGCTCTGACAGATTTTAGTAGTATTTTGATAATAGATGATGTTCACCTGCCCAAATGATCCAAATGATTATTCAGCCGAATAACCATAAAAAATGTCTCAATTTTTTTCC--CATTAAAATGAAAGGTAGGCTTTCCATATC-TGGGCCATCTGGTCTACCTCAACAAATGATAAACTGCCCAGGCAAGTGAATACTGAATAGACAGCTTCTGGGTTCTTCATTGTCAGCCATGGAGCAAAGCAATCATCATT---CAGCAGCAGCTTGAGATGCAGGG---CTCACAGGAGGGCTGAGTGTAGGTTGTGAGGTTGAGGGTCTCCAGGCCTGGGGTAGGGTGGCTGGAGTTGAGCAGGAAGCAGGTGGGCACACAGGGCTGAGGAATATGGCAGGGTGGGGGGCAGTTGTCACAG i canFam3.chr9 C 0 C 0 a score=31159.000000 s hg38.chr17_JH159146v1_alt 149108 8 + 278131 CAGATGGG s panTro4.chr17 66269661 8 - 82630442 CAGATGGG i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48025201 8 - 81552678 CAGGTGGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53129830 8 + 80904711 CAGGTGGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52654065 8 + 80997621 CAGGTGGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47697421 8 + 74645514 CAGGTGGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9964606 8 - 75148670 CAGGTGGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112837438 8 + 159171411 CAGGTGGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99556660 8 + 122082543 CAGGTGGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39385907 8 - 61074082 CAGGTTGG i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24802637 207 - 73212453 M a score=5246142.000000 s hg38.chr17_JH159146v1_alt 149116 1450 + 278131 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGGAGGAGCAGATGGTGGTGGCAGGCCCAGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATGGGCGTCTGGTTAGCTTTCAGTTTCTT----AGATGAGGATTCTGAGGTACAAATGTCTCCTCTTTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAACTGGAAGCCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCAGTTTGTCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTATTAA-GTTAATCATATTTTTGACTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGTTTCT-GGCATGCCAAACCTTATATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG-----TTTTTCCCTCTTAATTTAAAATACTATGG-----ATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAATGATGAACTGGACCATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCTCGGACATGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----TAGAATGGTACAGGATGAAGAAACTCCTTTTTATTATTTTTATTAAATCTGTAGTGAATTTCTCAATGTTGTATTA-------------TTCTATGGATTTTTT-----TTTTCTAAAATAG-------------------------------TCTCTATTCTCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATT----GGAAGG--------AAGGATCCACA----CAGTGGCCATTCTTTGTTGAATATACCA-CTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCACATGAATGGTGTACATACTTTAAAATAAGATGAAATAAGAATTAAAAGGAGAAACCACAAGAGTCACAGAA-CAATCATGGATTTTGGCAGGGAATCTGACTCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACTTACTCCCTACTTTGCATGTTTATTTGTTTTCATACCTTGGATCTTGAACTAGATTG-AAATTCCTTTGAGGTATGCCTTAAACAACATTATTTACTTAAGTCAGCC-------------------------------AGAGATTGAACTAGATAATATCAAATGTGTAATATTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAATTACAT-ACTCGTTAT--------------GTGGCAAT----TTGTTGACTTAACAGAAAGCAAAGATTCC-GGGTAGGTTGTTTCTGAGGGGACATTACC-AAAAACCAGTACGATCTACTTAAAAGAGAAGAAAGCTGGCTAAAA---- s panTro4.chr17 66269669 1445 - 82630442 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGGAGGAGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCCGCGAGAGGCACAGCAATCCATGGCAATGGGCGTCTGGTTAGCTTTCAGTTTCTT----AGATGAGGATTCTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAACTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCAGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTATTAA-GTTAATCATATTTTTGACTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGTTTCT-GGCATGCCAAACCTTATATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG-----TTTTTCCCTCTTAATTTAAAATACTACGG-----ATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAATGATGAACTGGACCATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCTCGGACATGTTTGCATTATCTAGTGATTTTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----TAGAATGGTACAGGACGAAGAAACTCCtttttattatttttaataaatCTGTAGTGAATTTCTCAAGGTTGTATTA-------------TTCTATGGATTTTTT-----TTTTCTAAAATAG-------------------------------TCTCTATTCTCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATT----GGAAGG--------AAGGATCCACA----CAGTGGCCATTCTTTGTTGAATATACCA-CTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCACGTGAATGGTGTACATACTTTAAAATAAGATGAAATAAGAATTAAAAGGAGAAACCACAAGAGTCACAGAA-CAATCATGGATTTTGGCAGGGAATCTGACTCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACTTACTCCCTACTTTGCATGTTTATTTGTTTTCATACCTTGGATCTTGAACTAGATTG-AAATTCATTTGAGGTATGCCTTAAACAACATTATTTACTTAAGTCAGCC-------------------------------AGAGATTGAACTAGATAATATCAAATGTGTAATATTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAATTACAT-ACTCGTTAT--------------GTGGCAAT----TTGTTGACTAAACAGAAAGCAAAGATTCC-GGGTAGGTTGTTTCTGAGGGGACATTACC-AAAAACCAGTACGATCTACTT-----AGAAGAAAGCTGGCTAAAA---- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24802844 1451 - 73212453 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGAAGGAGCAGATGGTGGTGGCAGGCCCGGTGGGGACACTGCAGCTGTGAGAGGCACAGCAATCCATGGCAATGGGCGTCTGGTTAGCTTTCAGTTTCGTAGACAGATGAGGATTCTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTATTATATACCCTCCCAAGTGGGCATTGGTCCAACTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCAGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCTGCTCTTATTAA-GTTAATCATATTTTTGACTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGTTTCT-GGCATGCCAAACCTTATATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTATAATTTTGGAGGCCAAACTCTTTTGG-----TTTTTCCCTCTTAATTTTAAATACTATGG-----ATAATGTGATTTCTATTGACTAGTTTCAGAATGAGTAACTCAAATGATGAACTGGACCATTTTCAACTCAATAAAGTCAACAAGAACATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCTCGGACATGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----TAGAATGGTACAGGAT---GAAACTCCtttttattatttttaataaatCCGTAGTGAATTTCTCAAGGTAGTATTA-------------TTGTATGGATTGTTT-----TTTTCTAAAATAG-------------------------------TCTCTATTCTCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATT----GGAAGG--------AAGGGTCCACA----CAGTGGCCATTCTTTGTTGAATATACCA-CTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCATGTGACTGGTGTACATGCTTTAAAATAAGATGAAATAAGAATTAAAAGGAGAAACCACAAGAGTCACAGAA-CAATCATGGGTTTTGGCAGGGAATCTGACCCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACTTACTCCCTACTTTGCATGTTTATTTGTTTTCATACCTTGGATCTTTAACTAGATTG-AAATTCCTTTGAGGTATGCCTTAAACAACATTATTTACTTAAGTCAGCC-------------------------------AGAGATTGAACTAGATAATCTCAAATGTGTAATATTCTA-GATTCCAACATCTTCTTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAATTACAT-ACTCGTTAT--------------GTGGCAAT----TTGTTGACTAAACAGAAAGCAAAGATTCT-GGGTAGGTTGTTTCTGAGGGGACATTACC-AAAAACCAGTATGATCTATTTAAAAGAGAAGAAAGCTGGCTAAAA---- i ponAbe2.chr17 M 207 C 0 s nomLeu3.chr19 48025209 1450 - 81552678 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGAAGGAGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCCGCGAGAGGCACAGCAATCCATGGCAATGGGCATCTGGTTAGCTTTCAGTTTCTTAGACAGATGAGGATTCTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAACCGGGAGGCT---------TCTT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATTAGTTTGGCATTTAC----ATGTCCACTAAGAGCTCCCGCTCTTATTAA-GTTAATCATATTTTTGACTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGTTTCT-GGCATGCCAAACCTTACATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTTTGG-----TTTTTCCCTCTTAATTTAAAACACTATGG-----ATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAATGATGAGCTGGACCATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCACGGACATGGTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----TAGAATGGTACAGGAT---GAAACTCCTTTTTATTATTTTTAAAAAATCAATAGTGAATTTCTCAAGGTTGTATTA-------------TTCTATGGATT-TTT-----TTTTCTAAAATAG-------------------------------TCTCTATTCTCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATCCATT----GGAAGG--------AAGGATCCACA----CAGTGGCCATTCTTTGTTGAATATACCA-TTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCATGTAAATGGTGTACGTACTTTAAAATAAGATGAAATAGGAATTAAAAGGAGAAACCACAAGAGTCACAGAA-CAATCATGGATTTTGGCAGGGAATCTGACCCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACTTACTCCCTACTTTGCATGTTTATTTGTTTTCACACCTTGGATCTTGAACTAGATTG-AAATTCCTTTGAGGTATGCCTTGAACAACATTATTTACTTAAGTCAGCC-------------------------------AGAGATTGAACTAGATAATCTCAAATGTGTAATATTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAATTACAT-ACTCGTTAT--------------TTGGCAAT----TTGCTGACTAAACAAAAAGCAAAGATTCT-GGGTAGGTTGTTTCTGAGGGGACATTACC-AAAAACCAGTATGGTCTATTTAAAAGAGAAGAAAGCTGGCTAAAA---- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53129838 1432 + 80904711 CTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATTGGTGTCTAGTTAGCTTTCAGTTTCTTAGACAGATGAGGTTGGTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAGCTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCTGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTGTTAA-GTTAATCATATTTTTGAGTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGGTTCT-GGCATGCCAAACCTTACATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG------TTTTCCCTCTTAATTTAAAATACTGTGGATCACATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAATGATGAATTGGACTATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCTCAGATACGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGAGG----CAGAGTGGTACAGGAT---GAAATTCCTTCTTATTATTTTTAATAAATTCGTAGTGAATTTCTCAAAGTTGTATTA-------------TTCTATGGATTGTTT-----TTTTCTAAAAGAG--------------------------------------TCCCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATTGGAAGGAAGG--------AAGGATCCACA----CAGTGACAATTCTTTGTTGAATGTACCA-TTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCA--------------------TCAAATAAGATGAAATAGGAATTAAAAGGAGAAACCTTAAGAGTCACAGAA-CAACAGTGGATTTTGGCAGGAAATCTGACCCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACCTACTCCCTACTTTGCTTGTTTATTTGTTTTCGTATCTTGGATCTTGAACTAGATTG-AAATTCCTCTGAGGTATGCCGTAAACAACATCTTTTACTTCAGTCAGCC-------------------------------AGAAATTGAACCAGATAATCTCAAAAGTGTGATAGTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAGTTACAT-ACTCGTTGT--------------GTGGCAAT----TTGTTGAATAAACAGAAAGCAAAGATTCT-TGGTAGGTTGTTTCTGAGGTCACATTACC-AAAAACCAGTAAGATCTATTTAAAAGAGAAGAAAGCTGACTAAAA---- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52654073 1432 + 80997621 CTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATTGGTGTCTAGTTAGCTTTCAGTTTCTTAGACAGATGAGGTTGGTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAGCTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCTGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTGTTAA-GTTAATCATATTTTTGAGTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGGTTCT-GGCATGCCAAACCTTACATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG------TTTTCCCTCTTAATTTAAAATACTGTGGATCACATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAATGATGAATTGGACTATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGACTACAGGCATCTCAGATACGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGAGG----CAGAGTGGTACAGGAT---GAAATTCCTTCTTATTATTTTTAATAAATTCGTAGTGAATTTCTCAAAGTTGTATTA-------------TTCTATGGATTGTTT-----TTTTCTAAAAGAG--------------------------------------TCCCAAAGTTATGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATTGGAAGGAAGG--------AAGGATCCACA----CAGTGACAATTCTTTGTTGAATGTACCA-TTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCA--------------------TCAAATAAGATGAAATAGGAATTAAAAGGAGAAACCTTAAGAGTCACAGAA-CAACAGTGGATTTTGGCAGGAAATCTGACCCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACCTACTCCCTACTTTGCTTGTTTATTTGTTTTCGTATCTTGGATCTTGAACTAGATTG-AAATTCCTCTGAGGTATGCCGTAAACAACATCTTTTACTTCAGTCAGCC-------------------------------AGAAATTGAACCAGATAATCTCAAAAGTGTGATAGTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTATAATTTAAGTTACAT-ACTCGTTGT--------------GTGGCAAT----TTGTTGAATAAACAGAAAGCAAAGATTCT-TGGTAGGTTGTTTCTGAGGTCACATTACC-AAAAACCAGTAAGATCTATTTAAAAGAGAAGAAAGCTGACTAAAA---- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47697429 1453 + 74645514 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCGGTGTCTGGTTAGCTTTCAGTTTCTTAGACAGATGAGGTTGGTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAGCTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCTGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTGTTAA-GTTAATCATATTTTTGAGTCATTGACTTGTCATTTTTGTCACAAGGTCATCACATTTTGTCTTCACAGGGTTCT-GGCATGCCAAACCTTACATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG------TTTTCCCTCCTAATTTAAAATACTGTGGATCACATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAGTGATGAATTGGACCATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGGCTACATGCATCTCAGACATGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----CAGAGTGGTACAGGAT---GAAAttcctttctgttatttttaataaatccgTAGTGAATTTCTCAAGGTTGTATTA-------------TTCTatggattgttt-----ttttctaaaagag-------------------------------tCTCTATTCCCAAAGTTACACCAATCTT-GTGGTGAATCAAAGTAT-AAATtcattggaaggaagg--------aaggatccaCA----CAGTGGCCATTCTTTGTTGAATGTACCA-TTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCATGTGAATGGTGTATGCActttaaaataagatgaaatagGAATGAAAAGGAGAAACCTTAAGAGTCACAGAA-CAACAGTGGATTTTGGCAGGAAATCTGACCCAATGCAATTTAGAACTATGGCATtcat----aaaaatcactttttcaCTGACTTACTCCCTactttgcttgtttatttgttttcatatcttggatCTTGAACTAGATTG-AAATTCCTTTGAGGTATGCCTTAAACAACATC-CTTATTTCAGTCAGCC-------------------------------AGAAATTGAACCAGATAATCTCAAATGTGTAATACTCTA-GATTCC-ACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAG--AATACTGTATAATTTAAATTACAT-ACTTGT--T--------------GTGgcaat----ttgttgaataaacagaAAGCAAAGATTCT-TGGTAGATTGTTTCTGATGGCACATTACC-AAAAACTAGTAAGATctatttaaaagagaagaaagctgaCTAAAA---- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9964614 1460 - 75148670 CTCCAGTAACCAAACCGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGAAGGTGCAGATGGTGGTGGCGGGCCCGGTGGGGACACTGCAGCTGCGAGAGGCACAGCAATCCATGGCAATCGGTGTCTGGTTAGCTTTCAGTTTCTTAGACAGATGAGGTTGGTGAGGTACAAATGTCTCCTCTCTTGTTAGGGCTCTTATATACCCTCCCAAGTGGGCATTGGTCCAGCTGGAAGGCT---------TCCT----GTTTTGTTTATGGCACCCTTTTTCACTGAGATTCTCTAATCTGTTTGGCATTTAC----ATGTCCATTAAGAGTTCCCGCTCTTGTTAA-GTTAATCATATTTTTGAGTCATTGACTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTTCACAGGTTTCT-GGCATGCCAAACCTTATATGACTTTTATGGGTAATCAATCCAAGTGACAATTCAGCTGTAATTTTGGAGGCCAAACTCTTCTTG------TTTTCCCTCTTAATTTAAAATAGTGTGGATCACATAATGTGATTTCTAATGACTAATTTCAGAATGAGTAACTCAAGTGATGAATTGGACCATTTTCAACTCAATAAAGTCAACAAGAATATGGCTATTTACAGATGAATGTTTCATGTGGCTACAGGCATCTCAGACATGTTTGCATTATTTAGTGATATTATAATTCAGGTTCTATTGAGCAAGCAAAGTGG----CAGAATGGTACAGGAT---GAAATTCCTTCCTGTTATTTTTAATAAATCCGTAGTGAATTTCTCAAGGTTGTATTA-------------TTCTATGGATTGTTT-----TTTTCTAAAAGAG-------------------------------TCTCTATTCCCAAAGTTACGCCAATCTT-GTGGTGAATCAAAGTAT-AAATTCATTGGAAGGAAGG--------AAGGATCCACA----CAGTGGCCATTCTTTGTTGACTGTACCA-TTAAAAGAAAACCACCTCAGCCTTGATTCATTTTCATGTGAATGGTGTATGCACTTCAAAATAAGATGAAATAGGAATTAAAAGGAGAAACCTTAAGAGTCACAGAA-CAACAGTGGATTTTGGCAGGAAATCTGACCCAATGCAATTTAGAACTATGGCATTCAT----AAAAATCACTTTTTCACTGACTTAGTCCGTACTTTGCTTGTTTATTTGTTTTCATATCTTGGATCTTGAACTAGATTG-AAATTCCTTTGAGGTATTCCGTAAACAACATCTTTTACTTCAGTCAGCC-------------------------------AGAAATTGAACCAGATAATCTCAAATGTGTAATATTCTA-GATTCCAACATCTTCCTACACCTGTCCATGATCAGCACAAATCCTTTCAGATAATATTGTGTGATTTAAGTTACAT-ACTCGTTGT--------------GTGGCAAT----TTGTTGAATAAAAAGAAAGCAAAGATTCT-TGGTAGGTTGTTTCTGAGGTCACATTACCAAAAAACCAGTAAGATCTATTTAAAAGAGAAGAAAGCTGACTAAAA---- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112837446 1460 + 159171411 CTCCAGTAACCAAACTGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGGATTTGTCGTAGGAGCAGATAGTGGTGGCTGGCCCGGTGGGGACACTGCAGCCGTAGGGGACACAGCAATCCATGGCGATGGGCGTCTGGTTGGCTTTCAGCTTCTTAGACAGATGAGGTTTCTGAGGTACAAATGACGGTTCTCTTGTTAGGACTCTTATATACCCTCCCCACTGGGCGCTGGTCCAACTGGAAAGCT---------TCCT----GTTTTGTTTATGGCACCCTTTCCCACTAAGATTCTCTAATCAGTTTGGCATTTACATGTATGTCCATCAAGAGTTCCCGCTCTTATTAA-GTTAATCATATTTTTGACTCATTGGCTTGTCATTTTTGTCACAAGATCATCACATTTTGTCTCCACAGGTTTCT-GGCATGCCAAACCTTACATGACTTTGA-AGGTTATCAATCCAAGTGATAATTGAGCTGTAATTTTGGAGGCTAAACTCTTCTTG-----TTTTTCCCTCTTAATTTAAAATACTATGGATAACATAATGTGATTTCTAATTACTAA-TTCAGAATGAGCAAAGCAAATGATTAATGGGACTATTTTCAACTCAGTAAAGTCAACAAGAATATGACTGTTTATAGATAAATGTTTCCTATGACTATAGGCATCTCAGAAATGTTTGCATTATTTGTTAATATTATAATTCAGGTTCTGCTGAGCAAGCAAAGTGG----CAGAATGGTACAGGAC---GTAACCCCTTTTCATTATTTTTAATAAATTTGTAGTGAATTTCTCAAGGTTGTATTA-------------TTCCATGGATTG-TT-----TTCTCTAAAAGAG-------------------------------TCTCTATTCTCAAAGTTATGCCTATCTT-GTGGTGAAACAAAGTAT-AAATTCACT----GGAAGG--------AAGGATCCACA----CAGTGGTTACTCTTTGTTGAATGTACCATTTAAAAAAAAGCCATCTCAGCCTTGATTCATTTTCACATGAATGGTGTACATACTTTAAAATAAGATGAAATGGGAATTAAAAGGAGAAATCATAAGAGTCACAGAA-CAACAGTGGATTTTGGCAGGATATCTGACCCAATGCAATTTAGAACTATGACATTCAT----AAAAATCACTTTTCCACTAACTTATTCCCGAC---ACATGTTTATTTGTTTTCATAACTTGGGTCTTGAACTGGATTG-AAATTCCTTTGAGGTTTGCCTTAAGCAACATTCTTTACTTCAGGCAGCC-------------------------------AGAAATTGAACTCGATAATCTGAAATGTGTACTGTGCTATGATTCCAACATCTTCTCATACCTCTCCATGATCAGCACAAATCCATTCAGATAGTATTATATAATTTAAATTACAT-ACTTGTTGC--------------ATGGCAATTTGATTGTTGAATAAACAGAAAGCAAAGATTCT-TGGTGGGTTGTTTCTGAGGGGACATTACC-AAAAACCAGTATGATCTGTTTAAAAGAGAAGTAAGTTCACTAAAA---- i calJac3.chr5 C 0 C 0 s mm10.chr11 99556668 1428 + 122082543 CTCCAGCTGCCAAATGGTGTGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGACTTGTCTGAGGAGCAGATGGTGGTGGCAGGGCCGGTGGGGACACTGCAGCAGCGGGCAACACAGCAAGCCATGGTGCT-GGAGTCTGCTTGGCTTTGG---TCTTTCAAAGATGAAGTTTCTGAGGTTCAAATGTGTCCTCTC-AGTCTGGACTGTTTTATACCTTCCTCAGTGGGTATGAGTCCAATCAGAAGGCTTCCCTCCTGTCCT----GTTTTGTTTGTGACACCCTATTCCACTGAGATTATCTAATCAGTTTGGCATTTTT----TTGTCTATTAAAACTACCTGCCCTTATTAA-TTCAGTTGGAGTTTTGACTCATGGACCTGCCA-TTTTGTCAAAATACCATCACAGTTTACCTTTACAGAATTCTGGGCATGCCCACACTTGTATGAGTT--ATGTGTAATTTGCTCAAGTGACAACTCATGGGCACTTTTAGGGTTTAAAATTTCTCAG---------TTCTTCTAAGTTTTCAATAGTATGCATTGTATGATGTCACATGTATGGAAAAGTTCTAGAGAAATTAGCTCAAATGATCAATTGGATACCTCTCCACTCAATGAAACCATCAAGAACATGGCCACTTATCTATAGCTATCTCAC-TGACAATGTACACTTCCACCA--TTTCTTTTATTTATTGATAATGGAATTCAGGGTCTCCTGAGCAAGCAATGGGG----CAGAATGTTGTGGTGC---TAGGttttttttt----tttttaat---tgtttaaaaaa------aatGCTGTTTTG-------------TTTTGTTGTTTGTCTGGAGATCTTTCAAAGGTGGTATTGTA----------------------TTTTATTTTCCTACAGCTTCACTATTCTTAAAGATGAGTCAAAGTATAAAAATCATT----GGAAAGAGTAAAAAAAAAAACCAAAAAACCCACGGCTTTCCTTGATT--CTATGTCA-TGAAAAGAAAACTAACCTGGTCGTCATTCATTTTCATGTGAGTGACACACACACTT---------------------------------ACTCT-----TCACAGAGTTAACGGCGGGGTTTAGATGG----------CAATGCAAGGTAGAATGAGGGACTTCATTAAAAAAAATCATGTT---AGTGACTTTCATC------TGCATAGGTGTTTGTACTCCCCCCTTGGAGCTTTGGCTGATAGT-ACATTCCATTGAG--AGGCCTTCTACAAGATCCCTCACTTCAGCTGGCCTTGGCTTGTGTTTGTGTTTCCT---------GTAGGCTGAAGGAGAGACACAACAATGCCTACTGTGCAACGGTTCTGACATCTTCACATATCTCT------TCAGCACAAACCC-CTCAGCCA-----GTGCAATCGAAAGCACAG-ATTTTTTTTTTTTAAACATTTGGATGGCAAA-TCATTTTTGGTTAAGTGCAGAGTACAGATTCC--------TTGGCCTTGGTGGGATATTGTT--TCATCCAACAGGACATGTTTAAA--AGAAGAAGGATAACTGAGA---- i mm10.chr11 C 0 I 503 s canFam3.chr9 39385915 1509 - 61074082 TTCCAGTAACCAAGTCGTGTGTGGGCAGGTGCTAGGCAGGCAGACTCCACACCGGCAGCATTTGTCAGAGGAGCAGATGGTGGTGGCGGGGCCAGTGGGTACGCTGCAGCAGCAGGGAACACAGCAAGCCATGGTGTTGAGAATCTGGTTTGCTTCTGGTTTCTTGCAAAGATGAGGTTTCTGGGATACAAATGTCTCCTCTTGCTTTGAGGCTCTTATATATGCTCCCTGGTGGGTGTTGGTCCAACCAGAAAGCT---------TCCTCCCATTTTTGTTTATCCCACCTGTCTTCACTAAGATTCTCTAATCAGTTTGGTATTTAC----TTGTCCATTGAGAGT-CCTGCCCTTATTAAGGTAAATCATGTTTTTGACTCATTGACTTGTCATTTTTGTCATAAGATGGTTGCATTTTATCTTCACAGGG-TCT-GGAATGCCAAACTTGA--------TTATGGATAATCAGTCTGAGAGAAAATTTAGCTATAGTTTCAGAGGCTATATTCTTCTCCCTGTTTTCCTCCCCCTTAATTTAAAATAGTATGCATAACATGATATCATCTTTAATTACTAATTTTGGTACATGTAACTCAAGCGGTTAAATGGACCATTCTCTA---AATAAAGTCGGTAAGGACATGGCTACTTACAGATGAATGTTACATATGGCTATATGCACCTCAGACATATTTACCTTATTTATTGAGGATATAATTCAGGTTTTATTGAGCAAGTGGGGTGATAACCAGAATGGAATAAGAT---GAAACCCCTTTC-ATTATTTTTAA----TCTATTGCAAGTTTCCAAAGGTTGTATTACCCTTATACTTTTTTTTAAGAATTTTAT-----TCTCaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaaaaaaagaaTTTTATTCTCAAAGTTATGCCAATCTC-ATAGTGAGTCAAAATGT-AAATTCTTT----GGGAAG--------AAAGATGCACC----CGGTTGCTGACCTTTGTTAAATGTACCA-GTAAAAGAAAATCACTTCA-TCTTTATTCATTTTCAAATGAATGCTATACTTAATTTAAAATAAATTGAAACAAGAACTAAAAAGAGAAGTCAT-AGGTTCATAAAA-CAACAGTGGCTTCTGGAAGGGGATCCAATCCAATGTGATTTAGAGCTATAGAAATCCT------------TTTTTTCACTGACTT----CCTACTGTGAA--------TGTTTTCACACCTTGGATCTTCAATTGGGTTGTAAATTCTTTTGAGGAATGCCTTATACATCATTcttcaccttagttggccttgatttgccattctgtaggttgacagatgaggaacttggactgaataatctctaatatgtaaca-tcca-gattccagcattttCACATACTTCCTCTTGATCAGCACAAAACTATTCAGTTA-----GTAGAATTTAAATTACATAATTTGTTGG--------------ATAGCAAG-TTGCTGTTGAGTAAACATGAAGTACAGATTCTTTGGATGGGTGTTTCTGAGGAGACATTACT-GAAAACCAACTTGGCCTGATTAAAAGGGAAGAAGCCCAGCTGGAACAAA i canFam3.chr9 C 0 C 0 a score=157216.000000 s hg38.chr17_JH159146v1_alt 150566 51 + 278131 TCAGTGG-AAAATATCAAATGTCATTGGTAGGTAAGCCTTATACGTTATACG s panTro4.chr17 66271114 51 - 82630442 TCAGTGG-AAAATATCAAATGTCATTGGTAGGTAAGCCTTATACGTTACACG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24804295 52 - 73212453 TCAGTGGAAAAATATCAAATGTCATTGGTAGGTAAGCCTTATATGTTATATG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48026659 51 - 81552678 TCAGTGG-AAAATATCAAATGTCATTGGTAGGTGAGCCTTATATGTTATATG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53131270 51 + 80904711 TCAGTGG-AAAATATCAAATGTCATTCATAGGTAAGCCTTATATGTTATATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52655505 51 + 80997621 TCAGTGG-AAAATATCAAATGTCATTCATAGGTAAGCCTTATATGTTATATG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47698882 51 + 74645514 TCATTGG-AAAATATCAAATGTCATTCATAGGTAAGCCTTATACGTTATATG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9966074 51 - 75148670 TCAGTGG-AAAATATCAAATGTCTTTCGTAGGTAAGCCTTATACGTTGTATG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112838906 42 + 159171411 TCAGTGG-AAAATATCAAATGTTATT---------GCTGTTAATCTTATATG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39387424 51 - 61074082 TCAGTGG-AAAATATTAAATGTCCTTGGTAAATAAACCTCATGCATTTTACG i canFam3.chr9 C 0 I 321 e mm10.chr11 99558096 503 + 122082543 I a score=212581.000000 s hg38.chr17_JH159146v1_alt 150617 78 + 278131 TTAAAACAACCAGTTTATCTTTT----TCTTTAACAACaaaaatatgtggtacatatatgccatagaatactatgcagccat s panTro4.chr17 66271165 78 - 82630442 TTAAAACAACCAGTTTATCTTTT----TCTTTAACAACaaaaatatgtggtacatatatgccatagaatactatgcagccat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24804347 78 - 73212453 TTAAAACAACCAGTTTATCTTTT----TCTTTAACAACaaaaatacgtggtacatatatgccgtagaatactatgcagccat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48026710 77 - 81552678 TTAAAACAACCAGTTTATCTCTT----T-TTTAACAACaaaaatatgtggtacatatacgccatagaatactatgcagccat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53131321 82 + 80904711 TTAAAACAACCAGTTTATCTTTTATTCTTTTTAACAACAaaaataagtgacacatgtatgccaatgaatactatgcagccat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52655556 82 + 80997621 TTAAAACAACCAGTTTATCTTTTATTCTTTTTAACAACAaaaataagtgacacatgtatgccaatgaatactatgcagccat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47698933 82 + 74645514 TTAAAACAActagtttatctttttttctttttaacaacaaaaataagtgaCACATGTATGCCAtcgaatactacgcagccat i papAnu2.chr16 C 0 I 322 s chlSab2.chr16 9966125 82 - 75148670 TTAAAACAACCAGTTTATCTTTTTTTCTTTTTAACAACAaaaataagtgacacatgtatgccatcgaatactatgcagccat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112838948 75 + 159171411 TTAAAACAGCCAGTTTATCTTTT------TTTAACAACaaaaa-atgtggtacatatatgccatggtatactatgcagccat i calJac3.chr5 C 0 C 0 e canFam3.chr9 39387475 321 - 61074082 I e mm10.chr11 99558096 503 + 122082543 I a score=2448919.000000 s hg38.chr17_JH159146v1_alt 150695 855 + 278131 aaaaaataaggagctcctatcctttgaagaaacatggatggagctggaggctattatctttagt-aactaatgcagaaacagaaaaccgaatactgcatgttctcacttataagtggtagctaaatgatgagaacgcatggacacatagaggggaataacagatgctagaacctatcagagggtggaaggtgggaggagggacaggatcaggaaaaataactggtaggtactaggcttaatacgtgggtgatgagataatctgtacaacaaacccccatgacaccagcttacctatgtaacaaacctgcacaggtacccctgaacttaaaagttaaaaacaaa-----aaAACAGAAAACAGC-TTCAAATCATTTTTATTAGCAGGAATTTACAACAAATGCCAAGGGTGTCGAACATCATACtgttaccagatggtgccatgcagttcc-aggcttttggtgtcc----caaagaattggacgagacacccacagcaaaacaaagaaacaaaagtgtattaagcacagtattacactctaagagggggagagcaaaccagcctctgtgagatgagatcagcccccagcttggtgcagtttgcgtctt------------------tgtgtgtgt---gtgtgtgtgtgtatgtgtgtgtgtgtgtcccttcccaaggctgcctaatctctagccagtgtttgcctctttgattgacaggtgtgttgcttagttactttggcccctgtgtgcttgcgcaccacctccagcccataattttaagt-acatacatgatatgcagtccatatgcataagcctgaatgagctgattttcatacaaggtcatgttaaggatacgttttctctttaatgcacatgcttatccat s panTro4.chr17 66271243 858 - 82630442 aaaaaataaggagctcctatcctttgaagaaacatggatggagctggaggctattatctttagt-aactaatgcagaaacagaaaaccaaatactgcatgttctcacttataagtggtagctaaatgatgagaacacatggacacatagaggggaataacagatgctggaacctatcagagggtggaaggtgggaggagggacaggatcaggaaaaataactggtaggtactaggcttaatacctgggtgatgagataatctgtacaacaaacccccatgacaccagcttacctatgtaacaaacctgcacaggtacccctgaacttaaaagttaaaaataaa-----aaAACAGAAAACAGC-TTCAAATCATTTTTATTAGCAGGAATTTACAACAAATGCCAAGGGTGTCGAACATCATACtgttaccagatggtgccatgcagttcc-aggcttttggtgtcccaaacaaagaattggacgagacacccacagcaaaacaaagaaacaaaagtgtattaagcacagtattacactcgaagagggggagagcaaaccgacctctgtgagatgagatcagcccccagcttggtgcagtttgcgtctt------------------tgtgtgtgt---gtgtgtgtgtg--tgtgtgtgtgtgtgtcccttcccaaggctgcctaatctctagccagtgtctgcctctttgattgacaggtgtgttgcttagttactttggcccctgtgtgcttgcgtaccacctccagcccataattttaaataacatacatgatatgcagtccatatgcataagcctgaatgagctgattttcatacaaggtcatgttaaggatacgttttctctttaatgcacatgcttatccat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24804425 858 - 73212453 aaaaaataaggagatactatcctttgaagaaacatggatggagctggaggctattatctttagt-aactaatgcagaaacagaaaaccaaatactgcatgttctcacttataagtggtagctaaatgatgagaacacatgtacacatagaggggaataacagacgctggaatctatcagagggtggaaggtgggaggagggacaggatcaggaaaaataactggtaggtactaggcttaatacctgggtgatgagataatctgtacaacaaacccccatgacaccagcttacccatgtaacaaacctgcacaggtacccctgaacttaaaagttaaaaacaaa-----aaAACAGAAAACAGCTTTCAAATCATTTTTATTAGCAGGAGTTTACAACAAATGCCAAGGGTGTTGAACATCATACtgttaccagatggtgctgtgcagttcc-aggcttttggtgtcccaaacaaagaactggacgagacacacacagcaaaacaaagaaacaaaagtctattaagcacagtattacactctaagagggggagagtgaaccgacctctatgagatgagatcagcccccagcttggtgcagtttgcgtctt------------------tgtgtgtgt---gtgtgtgtgtg--tgtgtgtgtgtgtgtcctttcccaaggctgcctaatctctagccagtgtctgcctctttgattgacaggtgtgttgcttagttactttggcccctgtgtgcttgcgcaccacctccagcccataattttaagt-acatacatgatatgcagtccatatgcataagcctgaatgagctgattttcatacaaggtcatgttaaggatacgttttctcttaaatgtgcatgcttatcCAT i ponAbe2.chr17 C 0 M 30000 s nomLeu3.chr19 48026787 842 - 81552678 aaaaaataaggagatcctatcctttgaagaaacatgggtggagctggaggctatcatctttagt-aactaatgcagaaacagaaaaccaaatactgcatgttctcacttataagtggtagctaaataatgagaacacatggacacatagaggggaataacagacactggaagctatcagagggtggaaggtgggaggagggacaggatcaggaaaaataactggtaggtactaggcttaatacttgggtgatgagataatctgtacaacaaacccccatgacaccagcttacctatgtaacaaacctgcacaggtacccctgaacttaaaagttaaaaacaaa-----aaACCAGAAAACAGCTTTCAAATCATTTTTATTAGCAGGAATTTACAACAAATGCCAAGGGTGTTGAACATCATACtgttactagatggtgccatgcagttcc-aggcttttggtgtcccaaacaaagaattggatgagacacacacagcaaaacaaagaaacaaaagtgtattaagcgcagtattacactctaagagggggacagcgaaccgacctctatgagatgagatcagtctccagcttggtgcagtttgtgtctt------------------tttg---------------------tgtgtgtgtgtgtgtcccttcccaaggctgcctaatctctagccagtgtctgcctctttgattgacaggtgtgttgcttagttactttggcccctgtgtgcttgcccaccacctccagcccataattttaagt-acatacatgatatgcagtccatatgcataagcctgaatgagctgattttcatacaaggtcatgttaaggatacgtttcctctttaatgcgcatgcttatccat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53131403 847 + 80904711 aaaaaataaggagatcccatcctttgaagaaacacggatggagctggaggctattatcattagtaaactaatgcagaaacagaaaaccaaatactgcgtgttctcacttataagtggtagctaaatgataagaacacatggacacatagaagggaataacagatgctgaaagctatcagagagtggaaggtgggaggagggacaggatcaggaaaaataactcatgggcactaggcttaatacctgggtgatgaaataatctgtacaacaaacccccatgacacaagtttacctatgtaacaaacctgcacgtgtacccctgaacttaaaagttaaaaacaaa-----aaAACAGAAAACAACTTTCAAATCATTTTTATTAGCAGGAATTTACAACAAATGCCAAGGGTGTTGAACATCATACtgttaccagatggtgccat---------gggcttttggtgtcccaaacaaagaattggacgagacacacacagcaaaacaaagcagcaaaagtgtattaagcacagtattacactctaagagggggagagcaaaccgacctctatgagatgagatcagcccccagcttggtgcattttgggtctt------------------tgtgtgtgt---gtgtgtg------tgtgtgtgtgtgtgtgtcttcccaagaccgcctaatctctagccagtgtctgcctctttgatggacaggtgtgttgcttagttactttggtccctgtgtgcttggacaccacctccagcccataattctaagt-acatacgtgatatgcggtccatatgcataagcctgaatgagctgattttcatacaaggtgatgttaaggatactttttctctttaacgcacatgcttatccat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52655638 847 + 80997621 aaaaaataaggagatcccatcctttgaagaaacacggatggagctggaggctattatcattagtaaactaatgcagaaacagaaaaccaaatactgcgtgttctcacttataagtggtagctaaatgataagaacacatggacacatagaagggaataacagacgctgaaagctatcagagagtggaaggtgggaggagggacaggatcaggaaaaataactcatgggcactaggcttaatacctgggtgatgaaataatctgtacaacaaacccccatgacacaagtttacctatgtaacaaacctgcacgtgtacccctgaacttaaaagttaaaaacaaa-----aaAACAGAAAACAACTTTCAAATCATTTTTATTAGCAGGAATTTACAACAAATGCCAAGAGTGTTGAACATCATACtgttaccagatggtgccgt---------gggcttttggtgtcccaaacaaagaattggacgagacacacacagcaaaacaaagcagcaaaagtgtattaagcacagtattacactctaagagggggagagcaaaccgacctctatgagatgagatcagcccccagcttggtgcagtttgggtctt------------------tgtgtgtgt---gtgtgtg------tgtgtgtgtgtgtgtgtcttcccaagactgcctaatctctagccagtgtctgcctctttgatggacaggtgtgttgcttagttactttggtccctgtgtgcttggacaccacctccagcccataattctaagt-acatacgtgatatgcggtccatatgcataagcctgaatgagctgattttcatacaaggtgatgttaaggatactttttctctttaacgcacatgcttatccat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47699337 851 + 74645514 aaaaaataaggagatCCCATCCTTTGAAGaaacacggatggagctggaggcaattatccttagtaaactaatgcagaaacagaaaaccaaatactgcgtgttctcacttataagtggtagctaaatgatgagaacacatggacacatagaggggaataacAGACGCTGGAAACTATCAGagagtggaaggtgggaggagggacaggatcaggaaaaataactcatgggtactaggcttaatacctggatgatgaaataatctgtacaacaaacccccatgacacaagtttacctatgtaacaaacctgcacgtgtacccctgaacttaaaagttaaaaacaaa-----aaaacagaaaacaactttcaaatcatttttatgaGCAGGAATTTACAACAAATGCCAAGGGTGTTGAACATCATACTGTTACCAGATGGTGCCATGCAGTTCCAGGGCTTTTGGTGTCCCAAACAAAGAATTGGACGAGACACACACAGCAAAACGAAGCAGCAAAAGTGTATTAAGCACAGTATTACACTCTTAGAGGGGGAGAGCGAACCGACCTCT-----ATGAGACCAACCCCCAGCTTGGTGCAGTTTGGgtctt------------------tttatgtgt---gtgtgtg------tgtatgtgtgtgtgtgtcttcccaAGGCTGCCTAATCTCTAGCCAGTGTCTGCCTCTTTGATGGACAGGTGTGTTGCTTAGTTACTTTGGTCCCTGTGTGCTTGCACACCACCTCCAGCCCATAATTTTAAGT-ACATACGTGATATGCGGTCCATATGCATAAGCCTGAATGAGCTGATTTTCATACAAGGTGATGTTAAGGATACTTTTTCTCTTTAACGCACATGCTTATCCAT i papAnu2.chr16 I 322 C 0 s chlSab2.chr16 9966207 865 - 75148670 aaaaaataaggagatcccatcctttgaagaaacatggatggagctggaggctattatccttagtaaactaatgcagaaacagaaaaccaaatactgcgtgttctcacttataagtggtagctaaatgatgagaacacatgggcacatagaagggaataacagatgctggaagttatcagagggtggaaggtggaaggagggagaggatcaggaaaaataactcatgggcactaggcttaatacctgggtgatgaaataatctgtacaacaaacccgcacgacacaagtttacctatgtaacaaacctgcacgtgtacccctgaacttaaaagttaaaaacaaa-----aaAACAGAAAACAACTTTCAAATCATTTTCATGAGCAGGAATTTACAGCAAATGCCAAGGGTGTTGAACATCATACtgttaccagatagtgccat---------ggtcttttggtgtcccaaacaaagaattggatgagacacgcacagcaaaacaaagcagcaaaagtgtattaagcacagtattacactctaagagggcaagagcaaaccgacctctatgagatgagattggcccccagcttggtgcagtttgggtctttgtgtgtgtgtgtgtgtgtgtgtgtgt---gtgtgtg------tgtgtgtgtgtgtgtgtcttcccaagactgcctaatctctagccagtgtctgcctctttgatggacaggtgtgttgcttagttacttagttacctgtgtgcttgcacaccacctccagcccataattctaagt-acatacgtgatatgcggtccatatgcataagcctgaatgagctgattttcatacaaggtgatgttaaggatactttttctctttaatgcacatgcttatccat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112839023 825 + 159171411 aaaaaggaatgagatcttgtgctttgaagaaacgtggatgaagctgaaggctattatccttagcaaactaatgcagaaacggaaaacaaaatatcacatgttctcacttacaagtggtagctaagtgatgagaatacatggacacatagaggggactaacagatgctggaacctatgagagggtggagagtggaagcagggagaggatcaggaaaaataattaataggtactagacttaatacctgggtgatggaataatctgtacaacaaacctccatgacacaggtttacctatgtaacaaacctgcacatgtacccctgaacttaaaagttaaaaaaaaaaaAACAAAACAGAAAACGGCCTTCAAATGATATTTATTAGCAGGAATTTACAACAAATGCCAAGGGTGTTGCGCATCATAc-------agatggtgccatgcagttcc-aggcttttggcgtcccaggcaaagaattggaggagacacacagagcaaaacaaagcagcaaaagcgtattgagaacagtattacactcgcagagcgggagagcagactgacctctacgagatgagattag-caccagcttgatacagattgggtctg------------------tgtgtgtgtgtggtgtgtg------tgtgtgtgtgtgtttctcttcccaaggctgcccaatctctagccagtggcctcctctttgattgacaggcttgttg-ttagttactttggcccctgtgtgcttgcgcatcatttccagcccataatttc-agt-gcatgcatgatatgcagtccatatgcataagctttaataagctgattttcatacagggtcat----------------------------caagcctattcct i calJac3.chr5 C 0 C 0 e canFam3.chr9 39387475 321 - 61074082 I e mm10.chr11 99558096 503 + 122082543 I a score=2061291.000000 s hg38.chr17_JH159146v1_alt 151550 908 + 278131 gaagagttgccccttactggtttggt-ccttatcttg--ccggccatgggggccttgctttcttctc-tatcttactt----tttgttttgg------------------------------------------------------------ctggagtgcagtggcat--tctctgctcactgcagcctctactttctgggatcaagtgattctcctacctcagactcccaagtagcagctgggattacaggtgcccgccaccacacccagctaagttttgta-ttttttgtagaga-ggggtgtttctccatgttggccaggctggtcttgaactcctgatctcaagtgatccacctgcttcggcctcccaaaatgccaggattacagcatgagccaccgcgcctggtctaacttctgcttcttatcttgcttcttgcttacctgccccttcaccttgcttctggtctctgcttttattcactccaccctttatccaagttttaattccctttgctagtctcctgcctcaA----TACCTGCACTTTACCACTGAAGAACAGATAAGCAAATTCAAGTGGCTTTCCCAGTATATTATAAAATTCAAAGTTAATGAACTAGTATTGAAATCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATCT---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATCGATTTTGAAATATTATatagattcaggagatctactgtacaacatggtgactatagtgaataaccatatattgcatttttgaaaaacgctgagagaatggattaagtgttctcatcacaaaaatga-taactatgtga-gtcacgcatatgttaatCATACAGCACATTACATAAAGTGAAGGCGGGAGTCTCCTAGgtactttaccctctgtgac s panTro4.chr17 66272101 909 - 82630442 gaagagttgccccttactggtttggt-ccttatcttg--ccggccatgggggccttgctttcttctc-tatcttactt----tttgttttgg------------------------------------------------------------ctggagtgcagtggcat--tctctgctcactgcagcctctactttctgggttcaagtgattctcctatctcagactcccaagtagcagctgggattacaggtgcccgccaccacacccagctaagttttgta-ttttttgtagagagggggtgtttctccatgttggccaggctggtcttgaactcctgatctcaagtgatccacctgcttcggcctcccaaaatgccaggattacaggatgagccaccgcgcctggtctaacttctgcttcttatcttgcttcttgcttacctgccccttcaccttgcttctggtctctgcttttattcactccaccctttatccaagttttaattccctttgctagtctcctgcctcaA----TACCTGCACTTTACCACTGAAGAACAGAGAAGCAAATTCAAGTGGCTTTCCCAGTATATTATAAAGTTCAAAGTTAATGAACTAGTATTGAAATCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATCT---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATCGATTTTGAAATATTATatagattcaggagatctactgtacaacatggtgactatagtgaataaccatatattgcatttttgaaaaacgctgagagaatggattaagggttctcatcacaaaaatga-taactatgtga-gtcacgcatatgttaatCATACAGCACATTACATAAAGTGAAGGCGGGAGTCTCCTAGgtactttaccctctgtgac i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48027629 908 - 81552678 gaagagttgccccttactggtttggt-ccttatcttg--ctggccatgggggccttgctttcttctc-tatcttactt----tttgttttgg------------------------------------------------------------ctggagtgcagtggcat--tctctgctcactgcagcctccactttctgggttcaagtgattctcctacctcagactcccaagtagcagttgggattacaggtgcccgccaccacacccagctaaattttgta-ttttttgtagaga-ggggtgtttctccatgttggccaggctggtcttgagctcctgatctcaagtgatccacctgcttcggcctcccaaaatgccaggattacaggatgagccaccgcgcctggtctaacttctgcttcttatcttgcttcttgcttacctgccccttcaccttgcttctggtctctgcttttattcactccaccctttatccaagttttaattccctttgctattctcctgcctcaA----TACCTACACTTTACCACTGAAGAACAGAGAAGCAAATTCAAGTGGCCATCCCAGTATATTATGAAATTCAAAGTTAATGAACTAGTATTGAAATCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATCT---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATTGATCTTGAAATATTACatagattcaggagatctactgtacaacatggtgactatagtgaataaccatacactacatttttgaaaaacactgagagaatggattaagtgttctcatcacaaaaatga-taactatgtga-gtcacgcatacattaatCATATAGCACATTACATAAAGTGAAGGCGGGAGTCTCCTCGGTACTTTACGCTCTGTGAC i nomLeu3.chr19 C 0 I 123 s rheMac3.chr16 53132250 905 + 80904711 gaagagttgccccttactggtttggt-ccttatcctgctctggcaatgggggacttgctttcttctcttatcttactt----tttgttttgg------------------------------------------------------------ctagagtacagtggcat--tctctgctcactgcagcctccacctcctgggttcgagtgattctcctacctcagactcccaagtagc---tgggattacaggtgcccatcaccacacccacataagttttgta-ctttttgtagagc-ggggggtttcaccatgttggccaggctggtcttgaactcctgacttcaagcgatccacctgctttggcctcccaaagtgccaggattacagtatgagccaccgcacctagtctaacttctgcttcatatcttgtttcttgcttacctgccccttcaccttgcttctggtccctgcttttattcactccgctctttatccaagttttaattccctttgctattctcctgcctcaA----TACCTACACTTTACCACCGAAGAACAGAGAAGCAAATTCAAGTGGCCTTCCGAGTATATTATAAAATTCAAAGTTAATGAACTAGTATTGAAACCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATAG---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATTTATCTTGAAATATTATatagattcaggagatctactatacaacatggtgactatagtgaataaccatatactgca---atgaaaaatgctgagagaatggattaagtgttcccaccacaaaaatga-tagctatgtga-atcatgcatatgttaatCATACAGCACATCACATAAAGTGAAGGCGGGAGTCTCCTAGgtactttaccctctgtgac i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52656485 905 + 80997621 gaagagttgccccttactggtttggt-ccttatcctgctctggcaatgggggacttgctttcttctcttatcttactt----tttgttttgg------------------------------------------------------------ctagagtacagtggcat--tctctgctcactgcagcctccacctcctgggttcgagtgattctcctacctcagactcccaagtagc---tgggattacaggtgcccatcaccacacccacataagttttgta-ctttttgtagagc-ggggggtttcaccatgttggccaggctggtcttgaactcctgacttcaagcgatccacctgctttggcctcccaaagtgccaggattacagtatgagccaccgcacctagtctaacttctgcttcttatcttgtttcttgcttacctgccccttcaccttgcttctggtccctgcttttattcactccgctctttatccaagttttaattccctttgctattctcctgcctcaA----TACCTACACTTTACCACCGAAGAACAGAGAAGCAAATTCAAGCGGCCTTCCGAGTATATTATAAAATTCAAAGTTAATGAACTAGTATTGAAACCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATAT---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATTTATCTTGAAATATTATatagattcaggagatctactatacaacatggtgactatagtgaataaccatatactgca---atgaaaaatgctgagagaatggattaagtgttcccaccacaaaaatga-tagctatgtga-atcatgcatatgttaatCATACAGCACATCACATAAAGTGAAGGCGGGAGTCTCCTAGgtactttaccctctgtgac i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47700188 909 + 74645514 GAAGAGTTGCCCCTTACTGGTTTGGT-CCTTATCCTGCTCTGGCAATGGGGGACTTGCTTTCTTCTCTTatcttactttttgtttgttttgg------------------------------------------------------------ctagagtacagtggcat--tctctgctcactgcagcctccacctcctgggttcaagtgattctcctacctcagactcccaagtagc---tgggattacaggtgcccatcaccacacccagataagttttgtatttttttgtagag--ggggggtttcaccatgttggccaggctggtcttgagctcctgacttcaagtgatccacctgctttggcctcccaaagtgccaggattacaggatgagccaccgcacctagtcTAgcttctgcttcttatcttgcttcttgcttacctgccccttcaccttgcttctggtccctgcttTTATTCACTCCGCCCTTTATCCAAGTTTTAATTCCCtttgctattctcctgcctcaa----tacCTACACTTTACCACCGAAGAACAGAGAAGCAAATTCAAGTGGCCTTCCCAGTATATTATAAAATTCAAAGTTAATGAACTAGTATCGAAACCGTCAAGGAAATGTTTAATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATCT---AGAAGACAGAGGCTTGGCAAGTAGAATATATGAAGAAGACCCTCTCCCATTCTCTGTGTTCTCTCtgacttctcttttaaaatttatcttgaaaTATTATATAGATTCAGGAGATCTActatacaacatggtgactatagtgaATAACCATACACTGCA---Atgaaaaatgctgagagaatggattaagtgttctcaccacaaaaatga-tagcTATGTGA-ATCATGCATATGTTAATCATACAGCACATCACATAAAGTGAAGGCGGGAGTCTCCTAGGTACTTTACCCTCTGTGAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9967072 906 - 75148670 gaagagttgccccttagtggtttggt-ccttatcctgctctggcaatgggggacttgctttcttctcttatcttactt----tttgttttgg------------------------------------------------------------ctagagtacagtggcat--tctctgctcactgcagcctccacctcctgggttcaagttattctcctacctcagactcccaagtagc---tgggattacaggtgcccatcatcacacccagctaagttttgtatttttttgtagaga-ggggggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatccacctgctttggcctcccaaagtgccaggattacaggatgagtcaccgcgcctggtctaacttctgcttcttatcttgcttcttgcttacttgccccttcaccttgcttctggtctctgcttttattcactctgccctttatccaagttttaattccctttgctattctcctgcctcaA----TACCTACACTTTACCACTGAAGAACAGAGAAGCAAATTCAAGTGGCCTTCCCAGTGTATTAAAAAATTCAAAGTTAATGAACTAGTATTGAAACCGTCAAGGAAATGTTTGATGTTTACTTACTCTTGACTTACCAGTCTCTCTCATCT---AGAAGCCAGTGGCTTGGCAAGTAGAATATATGAAGAAGACTCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAATTTATCTTGAAATATTATatagattcaggagatctactatacaacatggtgactgtagtgaataaccatatactgca---atgaaaaacgctgagagaatggattaagtgttctcaccacaaaaatga-tagctatgtga-gtcgtgcatatgttaatCATACAGCACATCACATAAAGTGAAGGCGGGAGTCTCCTAGgtactttaccctctgtgac i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112839848 957 + 159171411 gaagagttaccccttgctggtttggtcccttatcctg--ctggtcatgggggccttacttgcttctc-tatcttactt----ttggttttggctgtttaacatctgccactttttttttttttttttacaggttctcactctgtcacccagtctggagcacaatggtgtgatcttggctcactgcagcctccgcctcctgggttcaaacgattctcctgcctcagactcctgagtagg---tgggattacaggtgtccaccactatgcctggctaatttttgta----------gata-gggcagtttcaccttgctggccaggctggtatcgaactcctgacctcaagtgatccatctgccttggcctcccaaagtgccaggatta-agactgagccaccgtacctgacctaacttctgcttctcatcttgcttcttgcttatctgccccttcaccttgcttctgctctctgcttttattcactccgccctttatccaagttttaattccctttgctatttgcctgcctcaGTTCTTGCCTACACTTTACCACTAAAG-ACAGACAAACAAATTCGAGTGGCCTTCTCAGTATAGTATAAAATTCAAAGTTAATCAACTGGTATTGAAATCATCAAGGAAATGTTTAATGTTTACTTACTCTCGACTTACCAGCCTCTCTCATCTGTAATAAGTCAGTGGCTTGGCAAGTAGGATATATGAAGTGAACCCTCTCCCATTCTCTGTGTTCTCTCTGACTTCTCTTTTAAAACTTATCTTGAAATATTATACAGAttctggagatccacggtacaacatggtgactctagtgaacaacgatatactgcgtttttgaaaaatgctgagagaatggattaagtgttctcatcacaaaaacgattgactatatgaggtcgtgtgtgtgttaatCATGCAGCACATCACATAAAGTGAAGGTTGGAGtctcc---------taccctctgtgac i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39387475 321 - 61074082 I e mm10.chr11 99558096 503 + 122082543 I a score=11915.000000 s hg38.chr17_JH159146v1_alt 152458 5 + 278131 ctcgt s panTro4.chr17 66273010 5 - 82630442 ctcgt i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48028660 5 - 81552678 ctcgt i nomLeu3.chr19 I 123 C 0 s rheMac3.chr16 53133155 5 + 80904711 ctcgt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52657390 5 + 80997621 ctcgt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47701097 5 + 74645514 CTTGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9967978 5 - 75148670 ctcgt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112840805 5 + 159171411 cttgt i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39387475 321 - 61074082 I e mm10.chr11 99558096 503 + 122082543 I a score=1233949.000000 s hg38.chr17_JH159146v1_alt 152463 469 + 278131 tcatactgtttctttagcttaaagtgacctttcccaattctctagtttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactctaggtgattcttctagatgtttgcatccttttctctgctctcacaaaatgggctgcctattcttccctttcaacctcatttctttctgctatattttgtagtttgtcacttaaatttgttttcctcactccaatgcaaggttcttggaagtggtaatcgtatgttagttttatttgtcttt-ttcaagcacctaggacaatgcctgaaacagggtaggcatttgataaatatttgttgaatTGGATTACATTTCAGATTAGAATT-AAAAAGGTATTTATTTATTTTTATAATGGCCTTTT---------ATAACAGTAACACTTTATATAAAGAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTGTCAA s panTro4.chr17 66273015 469 - 82630442 tcatactgtttctttagcttaaagtgacctttcccaattctctagtttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactctaggtgattcttctagatgtttgcatccttttctctgctcccacaaaatgggctgcctattcttccctttcaacctcatttctttctgctatattttgtagtttgtcacttaaatttgttttcctcactccaatgcaaggttcttggaaatggtaatcgtatgttagttttatttgtcttt-ttcaagcacctaggacaatgcctgaaacagggtaggcatttgataaatatttgttgaatTGGATTACATTTCAGATTAGAATT-AAAAAGGTATTTATTTATTTTTATAATGGCCTTTT---------ATAACAGTAACACTTTATATAAACAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTGTCAA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48028665 464 - 81552678 Tcatactgtttctttagcttaaagtgacctttcccaattctctactttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactctaggtgattcttctagatgtttgcatccttttctctgctctcacaaaatgggctgcctattcttccctttcaacttcatttctttctgctatattttgtagtttgtcacttaaatttgttttcctcactccaatgcaaggttcttggaagtggtaattgtatgttagttttatttgtcttt-ttcaagcaccta--acaatgcctgaaatagggtaggcatttgataaatatttgttgaatTGGATTACATTTCAGATTAGAATT-TAAAAGG----TATTTATTTTTATAACGGCCTTTT---------ATAACAGTAACACTTTATATAAACAGAGTGATTCATTTTTTTGTGTGAATTGCTTTACAGTTGTCAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53133160 468 + 80904711 tcatactgtttctttaacttaaactgacctttcccagttctctactttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactttaggtgattcttctagatgtttgcatccttttctctgctctcacaaaatgggctgcctattcttccctttcaacctcatttctttctgctgtattttatagtttgtcacttaaatttgttttcctcactccagtgcaaggtt-ttggaagtggtaatcgtatgttagccttatttgtcttt-ttcaagcacttaggacaatgcctgaaacagggtaggcatttgataaatatttgttgcatTGGATTACATTTCAAATTAGAATT-AAAAAGGTATTTATTTATTTTTGTAATGGCCTTTT---------ATAACAGTAACGCTTTATATAAGCAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTGTCAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52657395 468 + 80997621 tcatactgtttctttaacttaaactgacctttcccagttctctactttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactttaggtgattcttctagatgtttgcatccttttctctgctctcacaaaatgggctgcctattcttccctttcaacctcatttctttctgctgtattttatagtttgtcacttaaatttgttttcctcactccagtgcaaggtt-ttggaagtggtaatcgtatgttagccttatttgtcctt-ttcaagcacttaggacaatgcctgaaacagggtaggcatttgataaatatttgttgcatTGGATTACATTTCAAATTAGAATT-AAAAAGGTATTTATTTATTTTTGTAATGGCCTTTT---------ATAACAGTAACGCTTTATATAAGCAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTGTCAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47701102 468 + 74645514 TCATACTGTTTCTTTAACTTAAACTGACCTTTCCCAGTTCTCTACTTTCCAAATCATGTTGCTCCCTCAAG-ATTCAGCCAAACATCCCCTTCATAAAGAAACTTTAGGTGATTCTTCTAGATGTTTGCATCCTTTTCTCTGCTCTCACAAAATGGGCTGCCTATTCTTCCCTTTCAACCTCATTTCTTTCTGCTGTATTTTATAGTTTGTCACTTAAATTTGTTTTCCTCACTCCAATGCAAGGTT-TTGGAAGTGGTAATCGTATGTTagccttatttgtcttt-ttcaagCACTTAGGACAATGCCTGAAACAGGGtaggcatttgataaatatttgttgcattgGATTACATTTCAAATTAGAAtt-aaaaaggtatttatttatttttgtaatggcCTTTT---------ATAACAGTAACCCTTTATATAAGCAGAGTGATTCA-GTTTTTGTGTGAATTGCTTTACAGTtgtcaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9967983 468 - 75148670 tcgtactgtttctttagcttaaactgacctgtcccagttctctactttccaaatcctgttgatccctcaag-attcagccaaacatccccttcataaagaaactttaggtgattcttctagatgtttgcatccttttctctgctctcacaaaatgggctgcctattcttccctttcaacttcatttctttctgctgtattttatagtttgtcacttaaatttgttttcctcactccaatgcaaggtt-ttggaagtggtaatcgtatgttagccttatttgtcttt-ttcaagcacttaggacaatgcctgaaacagggtaggcatttgataaatatttgttgcatTGGATTACTTTTCAAATTAGAATT-AAAAAGGTATTTATTTATTTTTGTAATGGCCTTTT---------ATAGCAGTAACCCTTTATATAAACAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTGTCAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112840810 465 + 159171411 tcatgctatttctttagcttgaagtg-tcttttccagctctctactttccaaaccctgttgattcctcaag-attcagccaagcatccccttcataaagaaactttaggtgattcttctaaatgttttcatccttttctctgctcttataaaatgtgctgccta---ttccctttcaacctcgtttctttctgctgtattttatagtttatcacttaaatttgttttcctcactccaatgcaaggcccttggaagtggtcatcatatcttagtcttgtttgtctct-ctcatgcacctaggatgatgcctgaaacatagcaggcatttgataaatatttgctgaatTGGATTAAATTACAGCTTAGAATT-TAAAAGCTATTTTTTTATTTTTATAATGACTTTCT---------GTAATAGTAACCCTATATATAAGGAGAGTGATTCA-TTTTTTGTGTGAATTGCTTTACAGTTTTCAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39387796 441 - 61074082 Tcatactgtttctt--------gcagtccttccctgattctctacttttcaaatgctactcattactcaagcatcaattcaaatatctccttcac-ggtagcttttaggtggttcttctaga-------------ttctttgctttcacaaagtgtgctgcctgtctttatatttagaccttgtgttagtctgttatatattatggttcatcatttatatctgtcttcctcactccagtgcaaactctctgaaaatgggaattatgtcttcatcttctttgtctctattcaagtacttcattcagtgcctggaacatagtaggcatttgataaatgtatattgaatTGGATCAAATTACAGATTAGAATGAAAAAAGGTATGTATTTATTTTTAGAATATACCCTTataataataataataataataatTTACATAAGCAGAACAATTCA-GT-----TGTGAAGTGCT------------- i canFam3.chr9 I 321 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99558096 503 + 122082543 I a score=55790.000000 s hg38.chr17_JH159146v1_alt 152932 38 + 278131 AAC-------ttttttttttttttgagatggagttttgctcttgt s panTro4.chr17 66273484 37 - 82630442 AAC--------Cttttttttttttgagatggagtttcgctcttgt i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48029129 37 - 81552678 AAC--------Attttttttttttgagatggagtttccctcttgt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53133628 42 + 80904711 AAC---ttttttttttttttttttgagatggagtttcgctcttgt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52657863 42 + 80997621 AAC---ttttttttttttttttttgagatggagtttcgctcttgt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47701570 43 + 74645514 aac--tttttttttttttttttttgagatggagtttcgctcttgt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9968451 45 - 75148670 AACttttttttttcttttttttttgagatggagtttcgctcttgt i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39388237 10 - 61074082 -----------------------------------TTACACTTGT i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99558096 503 + 122082543 I e calJac3.chr5 112841275 0 + 159171411 C a score=373023.000000 s hg38.chr17_JH159146v1_alt 152970 220 + 278131 tgcccaggctggagtgcaatggcacgatcttggctcacagtaacctctgcctcccgggttcaagccattctcctgcctcagcctgaggaatagatgggattacattcatgctctaccatgcccggctaattttgtatttttagtagagacgggctttcaccatgttggtcaggctggtcttgaactccggacctcaggtgatccgcccgcctcagcctcc s panTro4.chr17 66273521 220 - 82630442 tgcccaggctggagtgcaatggcacgatcttggctcacagcaacctctgcctcccgggttcaagccattctcctgcctcagcctgcggaatagatgggattacattcatgctctaccatgcctggctaattttgtatttttagtagagacgggctttcaccatgttggtcaggctggtcttgaactccggacctcaggtgatccgcccgcctcagcctcc i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48029166 220 - 81552678 ttcccagactggagtgcaatggcacgatcttggctcacagcaacctccgcctcccaggttcaagccattctcctgcctcagcctctggaatagatgggattacattcatgtgctaccatgcccggctaattttgtatttttagtagagacgggctttcaccatgttggtcaggctggtctcgaactccggacctcaggtgatttgcccgcctcagcctcc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53133670 215 + 80904711 tgccca-----gagtgcaatggcgtgatctctgctcacagcaacctctgcctcctgggttcaagccattctcctgcctcagcctccggagtagatgggactacacgcgtgcaccaccacacctggctaattttgtatttttagcagagacggggtttctccatgttggtcaggctggtctcgaactccagacctcaggtgatccgcccgcctcggcctcc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52657905 215 + 80997621 tgccca-----gagtgcaatggcgtgatctctgctcacagcaacctctgcctcctgggttcaagccattctcctgcctcagcctccggagtagatgggactacaggcgtgcaccaccacacctggctaattttgtatttttagcagagacggggtttctccatgttggtcaggctggtctcgaactccagacctcaggtgatccgcccgcctcggcctcc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47701613 215 + 74645514 tgccca-----gagtgcaatggcgtgatctctgctcacagcagcctctgcctcctgggttcaagccattctcctgcctcagcctccggagtagatgggactacaggcatgcaccaccacacctggctaattttgtatttttagcagagatggggtttctccatgttggtcaggctggtctcgaactccagacctcaggtgatccgcccgcctcggcctcc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9968496 215 - 75148670 tgccca-----gagtgcaatggcgtgatctctgctcacagcaacctctgcatcctggggtcaagtcattctcctgtctcagcctccggagtagatgggactacaggcatgcaccaccgcacctggctaattttgtatttttagcagagacggggtttctccatgttggtcaggctggtcttgaaccccagacctcaggtgatccgcccgcctcggcctcc i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39388247 0 - 61074082 C e mm10.chr11 99558096 503 + 122082543 I e calJac3.chr5 112841275 0 + 159171411 C a score=53475.000000 s hg38.chr17_JH159146v1_alt 153190 43 + 278131 caaagtgctgggattagagaggcgtgagccaccatgcctggcc s panTro4.chr17 66273741 41 - 82630442 caaagtgctgggatt--agaggcgtgagccaccatgcctggcc i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48029386 41 - 81552678 caaagtgctgggatt--agaggcgtgagccaccatgcctggcc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53133885 41 + 80904711 caacgtgctgggatt--acaggcatgacccaccgcgcccaacc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52658120 41 + 80997621 caaagtgctgggatt--acaggcatgacccaccgcgcccaacc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47701828 41 + 74645514 caaagtgctgggatt--acaggcatgacccaccgcgcccagcc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9968711 41 - 75148670 caaagtgctgggatt--acaggcatgagccactgcgcccagcc i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39388247 4 - 61074082 CAAA--------------------------------------- i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99558096 503 + 122082543 I e calJac3.chr5 112841275 0 + 159171411 C a score=210930.000000 s hg38.chr17_JH159146v1_alt 153233 77 + 278131 AACATTTTTAAATTCAAAGATTTACCTAAATGAGACAGCGAAAAAAAT-GGGCTTGGCTCAATCTTTGAGGTCCTTTC s panTro4.chr17 66273782 77 - 82630442 AACATTTTTAAATTCAAAGATTTACCTAAATGAGACGGTGAAAAAGAT-GGGCTTGGCTCAATCTTTGAGGTCCTTTC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48029427 78 - 81552678 AACATTTTTAAATTCAAAGATTTACCTAAATGAGACGGTGAAAAAAATAGGGCTTGGCTCAATCTTTGAGGTCCTTTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53133926 78 + 80904711 AACATTTTTAAATTCGAAGATTTACTTAAATGAGATGGTGAAAAAAATAGGGGTTAGCTCAATCTTTGAGGTCTTTTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52658161 78 + 80997621 AACATTTTTAAATTCGAAGATTTACTTAAATGAGATGGTGAAAAAAATAGGGGTTAGCTCAATCTTTGAGGTCTTTTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47701869 78 + 74645514 aacatttttaaattcaaagattTACTTAAATGAGATGGTGaaaaaaaTAGGGGTTAGCTCAATCTTTGAGGTCCTTTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9968752 78 - 75148670 AACATTTTTAAATTCAAAGATTTACTTAAATGAGATGGTGAAAAAAATAGGGGTTAGCTCAATCTTTGAGGTCCTTTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112841275 77 + 159171411 AACATTTTTAAATTCAAAGATTTACCTAAATGAGATGGTGAAAAA-ATAGGGCTTAGCTCAATCTTTGAGATCCTTTC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39388251 76 - 61074082 -ACAGTTTTACATTCAAAGCTTCACCTAAACGAGTCAATGAAAAA-ATATGGGTCAGCTCAGTCTTCGGGGTCTCTTC i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99558096 503 + 122082543 I a score=3501255.000000 s hg38.chr17_JH159146v1_alt 153310 1107 + 278131 TGTGAGCATGTTGATCTCAAATTGCTAGCTTCACTGCCTCTTTAA--GGACAC--GTGAG---TTTATTTAGAGGCA-GGG--AAAAAATAAAAATCAAAGGTAGATGCTGACCTTGGCATTT-AAAACGATTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGGTATCTACGTATGCCTGTGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATGTATTTTTAAGTTCATGATG----CATGTGTCAAGAGTCGTTGGGTAATTATAGCATTAAATGTTGAGGCAGTATGTGGTTTGGGGAGTAGTGGTGTTTATTTAGTTTTGAAGTAAGGGGATCCATGGTAGCA---TTTTTTTTCCCATTTCTCATTTGAAATCATTGTTCAAAACAGGAAAAGAAAACTTCTGTAAAACTGAAGGCACAGTGCT---ATATTTTCTTCCAAATGGCCTCATTAAAGGCCATTTGCTGA-GCAGCGCTTAATGACTA---CTGAAGGTCCTCAGGGTAATGTGGGC----AAGC-------------TCTTTGG----------CTAGCAGCAAGGTGGTTCACACT-------CTGGATGCAGGTGGTGACAGAGAGCCCGCTCAGGGTTGGAGCTGGGTGGCATTTGTTGAgcagtcaacaggatggcacataggagtcaggcatgcagccaggcaggGGCCAGG-TTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGACAGGTGCTGGGTAGGCAGACTTCACATTGACAGCTTATGTCAGAGGGGCAGATAGTGGTGGCCAGGCC---AGTGGGGACGCTGCAGCATCCTTGGAGATAGGAATCACAGCAAGACATAGTGACAGTGGACCAGGACAATGTTTTG-TGGCAAAGGAA-GGCTTTCTTCTACAAGGTTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACACGGCTTCTGTCCATCAGAATGTTGGACGGAACATCCTTGTTGCTGTTTACCTAATTCTGTAAAAATAACTCACTAACTTCTTATGTATCAGACAGGGGATGAGCTCTCCTTCAGTTTTATTTAGTTGTGTTGCTGCATTCAAACTTGCTTTCTGTTGTAGTTT s panTro4.chr17 66273859 1107 - 82630442 TGTGAGCATGTTGATCTCAAATTGCTAGCTTCACTGCCTCTTTAA--GGACAC--GTGAG---TTTATTTAGAGGCA-GGG--AAAAAATAAAAATCAAAGGTAGATGCTGACCTTGGCATTT-AAAACGATTCTGAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGGTATCTACGTATGCCTGTGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATGTATTTATAAGTTCATGATG----CATGTGTCAAGAGTCGTTGGGTAATTATAGCATTAAATGTTGAGGCAGTGTGTGGTTTGGGGAGTAGTGGTGTTTATTTAGTTTTGAAGTAAGGGGATCCATGGTAGCA---TTTTTTTTCCCATTTCTCATTTGAAATCATTGTTCAAAACAGGAAAAGAAAACTTCTGTAAAACTGAAGGCACAGTGCT---ATATTTTCTTCCAAATGGCCTCATTAAAGGCCATTTGCTGA-GCAGCGCTTAATGACTA---CTGAAGGTCCTCAGGGTAATGTGGGC----AAGC-------------TCTTTGG----------CTAGCAGCAGGGTGGTTCACACT-------CTGGATGCAGGTGGTGACAGAGAGCCTGCTCAGGGTTGGAGCTGGGTGGCATTTGTTGAGCAGTCAACAGGATGGCACATAGGAGTCAGGCACGCAGCTGGGCAGGGGCCAGG-TTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGATAGGTGCTGGGTAGGCAGACTTCACATTGACAGCTTATGTCAGAGGGGCAGATAGTGGTGGCCAGGCC---AGTGGGGACGCTGCAGCATCCTTGGAGATAGGAATCACAGCAAGACATAGTGACAGTGGACCAGGATAATGTTTTG-TGGCAAAGGAA-GGCTGTCTTCTACAAGGTTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACACGGCTTCTGTCCATCAGAATGTTGGACGGAACATCCTTGTTGCTGTTTACCTAATTCTGTAAAAATAACTCACTAACTTCTTATGTATCAGACAGGGAATGAGCTCTCCTTCAGTTTTATTTAGTTGTGTTGCTGCATTCAAACTTGCTTTCTGTTGTAGTTT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48029505 1109 - 81552678 TGTGAGCATGTTGATCTCAAATTGCTAGCTTCACTGCCTCTTTAA--GGACACGTGTGAG---TTTATTTAGAGGCA-GGG--AAAAAATAAAAATCAAAGGTAGATGCTGACCTTGGCATTT-AAAACGATTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGGTATCTACGTATGCCTATGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTACTGGATGTATTTAGAGGTTCATGATG----CATGTGTCAAGAGTCATTGGGTAATTATAGCATTAAATGTTGAGACAGTATGTGGTTTGGGGAGTAGTGGTGTTTATTTAGTTTTGAAGTAAGGAGATCCATGGTAGCA---TTTTTTTCCCCATTTCTCATTTGAAATCATTGTTCAAAACAGGAAAAGAAAAATTCTGTAAAACTGAAGGCACAGTGCT---ATATTTTCTTCCAAATGGCCTAATTAAAGGCCATTTGCTGA-GCAGCCCTTAATGACTA---CTGAAGGTCCTTAGGGTAATGTGGGC----AAGC-------------TCTTTGG----------CTAGCAGCAAGGTGGTTCACACT-------CTGGATGCAGGTGGTGACAGACAGCCCACTCAGGGTTGGAGCTGGGTGGCATTTGTTCAGCAGCCAACAGGATGGCACATAGCAGTCAGGCACACAGCAGGGCAGGGGGCAGG-TTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGACAGGTGCTGGGCAGGCAGACTTCACATTGACAGCTTATGTCAGAGGGGCAGATAGTGGTGGCCAGGCT---AGTGGGGACGCTGCAGCATCCTTGGAGATAGGAATCACAGCAAGACATGGTGACAGTGGACCAGGAAAATGTTTTG-TTGCAAAGGAA-GGCTTTCTTCTACAAGATTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACACGGCTTCTGTCCATCAGAATGTTGGACGGAACATCCTTGTTGCTGTTTACCTAATTCTGTAAAAATAACTCACTAACTTCTTATGTATCAGACACGGGATGAGATCTCCTTCAGTTTTATTTAGTTGTGTTGCTGCATTCAAACTTGTTTCCTGTTGTAGTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53134004 1124 + 80904711 TGTGAGCATGTTGATCTCAAATTGCCAGCTTCACTCCTTCTTTAA--GGACACATGTGAG---TTTATTTAGAGGCA-GGG--AAAAAACAAAAATTAAAGTTAGATGCTGACCTTGGCATTT-AAAACGACTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGGTATCTGTGTATGCCTGTGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATATATTTATAAGTTCATGATG----CATGTGTCAAGAGTCGTTGGGTAATCATAGCATTAAATGTTGAGACAGTATGTGGTTTGGGGAGTTGTGGTGTTTATTTAGTTTTGAAGTAAGGAGATCCACGATAGCATTTTTTTTTTTCCCATTTCTCATTTGAAATCATTGTTCGAAACAGGAAAAGAAAACTTCTGTAAAACTGAAGGCACAGTGCTATAATATTTTCTTCCAAATGGCCTAATTAAAGGCCATTTGCTGA-GCAGCCCTTAATGACTA---CTGAAGGTCCTCAGGGCAATGTGGGCA---AAGC-------------TCTTTGG----------CTAGCAGCAAAGTGGTTCACACTCATAAGGCTGGACGCAGGTGGTGACAGAGAGCCTACTCAGGGTTGGAGCTGGGTGGCATTTGTTGGGCAGGCAACAGGATGGCACATAGGAGTCAGGCACACAGCAGGGCAGGGAGCAGGTTTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGGCAGATGCTGGGCAGGCAGGCTTCACATTGACAGCTTATGTCAGAGGGACAGATAGTGGTGGCCAGGCC---AGTGGGGACACTGCAGCATCCTTGGAGCTAGGAATCACAGCAAGACATGGTGACAGTGGACCAGGAAAATGTTTTG-TTGCAAAGAAA-GGCTTTCTTCTACAAAGCTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACATGGCTTCTGTCCATCAGAATGTTGGACGGAACATCCTTGTTGCTGTTTACATAATCCTGTAAAAATAACTCCCTAACTTCTTGTGTATCAGACACGGGATGAGCTCTCCTTGAGTTTCATTTAGTTGTGTTGCTACATTCAAACTTGCTTCCTGTTGTAGTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52658239 1123 + 80997621 TGTGAGCATGTTGATCTCAAATTGCCAGCTTCACTCCTTCTTTAA--GGACACATGTGAG---TTTATTTAGAGGCA-GGG--AAAAAACAAAAATTAAAGTTAGATGCTGACCTTGGCATTT-AAAACGACTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGGTATCTGTGTATGCCTGTGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATATATTTATAAGTTCATGATG----CATGTGTCAAGAGTCGTTGGGTAATTATAGCATTAAATGTTGAGACAGTATGTGGTTTGGGGAGTTGTGGTGTTTATTTAGTTTTGAAGTAAGGAGATCCACGATAGCA-TTTTTTTTTTCCCATTTCTCATTTGAAATCATTGTTCGAAACAGGAAAAGAAAACTTCTGTAAAACTGAAGGCACAGTGCTATAATATTTTCTTCCAAATGGCCTAATTAAAGGCCATTTGCTGA-GCAGCCCTTAATGACTA---CTGAAGGTCCTCAGGGCAATGTGGGCA---AAGC-------------TCTTTGG----------CTAGCAGCAAAGTGGTTCACACTCACAAGGCTGGACGCAGGTGGTGACAGAGAGCCTACTCAGGGTTGGAGCTGGGTGGCATTTGTTGGGCAGGCAACAGGATGGCACATAGGAGTCAGGCACGCAGCAGGGCAGGGAGCAGGTTTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGGCAGATGCTGGGCAGGCAGGCTTCACATTGACAGCTTATGTCAGAGGGACAGATAGTGGTGGCCAGGCC---AGTGGGGACACTGCAGCATCCTTGGAGCTAGGAATCACAGCAAGACATGGTGACAGTGGACCAGGAAAATGTTTTG-TTGCAAAGAAA-GGCTTTCTTCTACAAAGCTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACATGGCTTCTGTCCATCAGAATGTTGGACGGAACATCCTTGTTGCTGTTTACATAATCCTGTAAAAATAACTCCCTAACTTCTTGTGTATCAGACACGGGATGAGCTCTCCTTGAGTTTCATTTAGTTGTGTTGCTACATTCAAACTTGCTTCCTGTTGTAGTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47701947 1120 + 74645514 TGTGAGCATGTTGATCTCAAATTGCCAGCTTCACTCCTTCTTTAA--GGACACATGTGAG---TTTATTTAGAggca-ggg--aaaaaacaaaaattaaagttagATGCTGACCTTGGCATTT-AAAACGACTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCGCAGTTTTCTTCAGGTATCTACGTATGCCTGTGAGGCCTCTTTTTGACTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATATATTTATAAGTTCATGATG----CATGTGTCAAGAGTCGTTGGGTAATTATAGCATT-AATGTTGAGACAGTATGTGGTTTGGGGAGTTGTGGTGTTTATTTAGTTTTGAAGTAAGGAGATCCATGAtagca---ttttttttcccatttctcatTTGAAATCATTGATCGAAACAGGAGAAGAAAACTTCTGTAAAACTGAAGGCACAGTGctataatattttcttccaaatggCCTAATTAAAGGCCATTTGCTGA-GCAGCCCTTAATGACTA---CTGAAGGTCCTCAGGGCAATGTGGGCA---AAGC-------------TCTTTGG----------CTAGCAGCAAAGTGGTTCACACTCACAAGGCTGGACACAGGTGGTGACAGAGAGCCTACTCAGGGTTGGAGCTGGGTGGCATTTGTTGGGCAGGCAACAGGATGGCACATAGGAGTCAGGCACGCAGCAGGGCAGGGGACAGGTTTCACAGCCGGTGGATTGAAGGAGGCTGATCTCATGAGGGCAGATGCTGGGCAGGCAGGCTTCACATTGACAGCTTCTGTCAGAGGGACAGATAGTGGTGGCCAGGCC---AGTGGGGACGCTGCAGCATCCTTGGAGCTAGGAATCACAGCAAGACATGGTGACAGTGGACCAGGAAAATGTTTTG-TTGCAAAGAAA-GGCTTTCTTCTACAAAGTTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACACGGCTTCTGTCCATCAGAATGTTAGACGGAACATCCTTGTTGCTGTTTACATAATCCTGTAAAAATAACTCACTAACTTCTTGTGTATCAGACACAGGATGAGCTCTccttcagtttcatttagttgtGTTGCTACATTCAAACTTGCTTCCTGTTGTAGTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9968830 1121 - 75148670 TGTGAGCATATTGATCTCAAATTGCCAGCTTCACTCCTTCTTTAA--GGACACAAGTGAG---TTTATTTAGAGGC--GGG--AAAAAACAAAAATTAAAGTTAGATGCTGACCTTGGCATTT-AAATCGACTCTAAGCTTAGAGCCTAATGCATTTCACTATCCTCACAGTTTTCTTCAGATATCTACGTATGCCTGTGAGGCCTCTTTTTGGCTAT-GAAATTTATGTTGATGTCATCAGAAAGTGTAATTCTGCTGGATATATTTATAAGTTCATGATG----CTTGTGTCAAGAGTCGTTGGGTAATTATAGCATT-AATGTTGAGACAGTATGTGGTTTGGGGAGTTGTGGTGTTTATTTAGTTTTGAAGTAAGGAGATCCGTGATAGCA-TTTTTTTTTCCCCATTTCTCATTTGAAATCATTGTTCGAAACAGGAAAATAAAACTTCTGTAAAACTGAAGGCACAGTGCTATAATATTTTCTTCCAAATGGCCTAATTAAAAGCCATTTGCTGA-GCAGCCCTTAATGACTA---CTGAAGGTCCTCAGGGCAATGTGGGCA---AAGC-------------TCTTTGG----------CTAGCAGCAAAGTGGTTCACACTCACAAGGCTGGACGCAGGTGGTGACTGAGAGCCTACTCAGGGTTGGATCTGGGTGGCATTTGTTGGGCAGGCAACAGGATGGCACATAGGAATCAGGCACGCAACAGGGCAGGGGACAGGTTTCACAGCAGGTGGGCTGAAGGAGGCTGATCTCATGAGGGCAGATGCTGGGCAGGCAGACTTCACATTGACAGCTTATGTCAGAGGGACAGATAGTGGTGGCCAGTCC---AGTGGGGACGCTGCAGCATCCTTCGAGCTAGGAATCACAGCAAGACATGGTGACAGTGGACCAGGAAAATGTTTTG-TTGCAAAGGAA-GGCTTTCTTCTACAAAGTTGTCCTCTATGGGTCTTTTATATCCACCTATCTCAGGGAACATGGCTTCTGTCCATCAGAATGTTGGATGGAACATCCTTGTTGCTGTTTACATAATCCTGTAAAAATAACTCACTAACTTCTTGTGTATCAGACATGGGATGAGCTCTCCTTCAGTTTCATTTAGTTGTGTTGCTACATTCAAACTTGCTTCCTGTTGTAGTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112841352 1112 + 159171411 TGTGAGCACACTGATCTCAAATTGCCAGCTTCCCTGCCTCTTTAA--GGACACATGTGAG---TTTATGTAGAGGCA-GGGAAAAAAAATAAAAATCAAAGGTAGGTGCTGAGCTTGGCATTT-GAAACAATTCTGAACTTAGAGCCTCATGCATTTCACTATCCTCACAGTTTACTTCAGGTATTTACATATCCCTGAGAGGCCTCTTTTTGGTTAT-GAAATTTATGTTAATGTCATCAGAAAGTGTAATTCTGCTGGATATATTTATAAGTTTATGATG----CATTTGTCAAGAGTCATTGGGCAATTATAGCATTAAATGTTGAGACAGTATGTGGTT--GGGAGTAGAGGTGTTTATTTAGTTTTGAAGTAAGAAGATCTATGATAGCA----TTTTTCTTCCATTTCTCATTTGAAATCACTGTTTACAGCAGGAAGAGAAAACTTTTGTAAAACTGAAGGCACAGTGCCATAATATTTTCTTCCAAAGCACGTAATTAAAGGCCATTTGCTGA-GCAGCCCTTAATGACTA---TTGAAGGTTCTTAGGGCAAT-TGGGC----AAGC-------------TTCTTGG----------CTAGCAGCAAGGTGGTTTGCACTCCCAAGGCTGGACGCAGGTGGTGACAGAGAGCCCGGTCAGGGTTGGAGCTGGGTGGCAGTTGCTGAGCAGCCAACAGGAGGGCACATAAGAGTCAGGCATGCAGCAGGGCAGTGGGCAGGTTTCAAAGCAGGTGGGCTGAAGGAAGCTGATCTCACGCAGCCAAGTGCAGGACAGGCAGACTTCACATTGACAGCTTATGTCAGAGGAGCAGATGATGGTGGCTGGGCC---AATGGGGATGCTGCAACATCCTTGGAAACAGGAATCACAGCAAGAAGTGGTGCCAGTGGACCAGGAAAATTTTTTGTTTGCAAAGGAA-GGCTTTCTTCTGCAAAGCTGTCCTCTGTGAGTCTTTTATATCCACCTATCTCAGGGAACGTGGCTCCCGTCTGTCAGAATGTTGGACGAAACATCCTTGCTGCTGTTTACATCATCCTGTAAAAATAACACACTAACTTCTTATGTCTCAGACGCGGGATCACCTCTCCCTCAGTTCTATCTGGTTGTGTTGCTACATTCAAACTTGC-------TGTAGTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99558599 1110 + 122082543 TGTGAGTGTGTGCATGTCTAATGATCAGCTTGGCTGTGCCTACAA--GGACACATTTGAG---TTTGTTTAAATATT-CAG--GGAAAACAAAAGTTAAAGGTAGGTGCTGATCTTGGAATTTAAAAACAATTCTAAGCTCAGTA-TGAATGTGTTTTATGAGTCAGGCAGTCTCCTGCGTGTATCTGCGTATCCTAGTGTGACTTCCTTTCAGCTATGGAGATTTATGTTGATGTCATCAGAAAGCATAACTCTGCTGTACACATTTATAGCTTCATGATG----CTTGTGTCAAGAGTCCTTGGGTAATTATAGCATCAGACACCGAGACAACACAAGATTTGGGGAGTAGAGGTGTTTATTTACTTTTAAAACATGGGGATCTAGGAGAACA------ATTTTTCCATTT---ACCTGAAATCATTGCTCAAAACACAGAAAGAATACTTCTGTAAAAATGAAGCCTCAGGGTC---AAAACGTATTCCAAAGTGCCTCACTAAA-GCCATTTGTTAATGCAGCCGTCAGTGGCAAACTTTGTAGATCCTTAAGGCAAGGTAGGGAAGGAAGC-------------TTTTTAAGTGCTTTCATTTAGCAGCAAGAGGGGTCACACTCACAGGGTTCAACACAGGTGGAAACAGAGATCCCCTTCAGGTTTGGGGCAGGGTAGCCCTTGTTGAGCAGCCAACACGATGACACATAGGAATCAGGCACACAGCAGGATGGGGGGCAAGTGTCACAGCAGCTGGGGTGAAGGAGGCTGATCTTGTGTGGACAGGTACTAGGCAGGCAGACTCCACACGGACAGTATATGTCAGAGGAGCAGAGGGTGGTGGCCGGGCC---AATGGGGACGATACGGCATCCTTGCAGATAGGAATTGCAGCCGGTCATGGTGACAGTGAACCAGG------TTTTG-TTGCTGAGGAACGGCGTTCTTCCACAAAGTTGCCCTTGGAGGGCCTTTTATACCTACCTATTTCAGGGACCATGGCCTCAGTCT-TCAGTCTGCT----------TCCTTGTTGGTGTTTGCACAACTCCACACAAATAACGCAATGCCTTCTT---TATCAGCCACGGGACACACACTCCTGAAGTTTTATTTGGCTGTGTTGCTTTACCCAAACTTGCTTCCTGCTGCAGTTT i mm10.chr11 I 503 I 5163 s canFam3.chr9 39388327 1085 - 61074082 ----TGTATGTTGATATTTGATTGTCAGTTTCTCAGAATCTTTAAACAGACATATGTGAGTTATTTACTTAGAGAGACAGG--AAAACATTAAAATTAAAAGCAGGGGCTGACCTTGGAATTT-AAAATGATTTTAAGCTTACATCTTAATATATCTGACCATTCAGGCAATTTTCTTCAAGTATTTACATAACCTTGTGAGGCCTCTTTTTGCTTAT-GTGGTTTATGTTGATGTCATCAGTTAATGTCATTCTGCTGGACGTATTTATAGGTTTATGATGTGCACATGCGTTAAGAGTTGTGCAGTAATTATAGCATTAAACA-CGAGACAGTACATGGTTTGGGGCACAGTGGTGCTTATTTAGTTTTAAGGTGAGGAGGCTCATGACAGTG------TTTATTCGACTTCTCACTGTAAGTCATCATTCAAAACACAGAAAGAACAGTTCTGCAAAACTGAAAGCACAGTGTCAGAACGTTTTCTTCCAGAGCTTTTAATTAAAAACCATTTGCTGA-GCAGCCCTTAATGACTA---TTGTTGTCTCTTGGGGCAATGTGGGC----AAGCTCCCATAGCCATATCTTTGG----------CTAGCA-CCTGGTGCTTCACATGCACAGGGTTGGACACAGGTGGTGATAGAGATCCCACTCAGGTTTGGAATAGGGTGGCAGCTGTTGAGAAGCCAACATGATGGCACATAGGAGTCAGGCACACAGCAGGGTGGGGGGCAGGGGTCGCAGCAGGTGGGCTGAAGGAGGCTGAGCTGGTGTGGGCAGGTGCTGGGCAGGCCAATTCCACATTGACAGCACAGGTCAGAGGAGCATATGGTGGTGGTGGGGCCGGTGGTGGGGATCCTGCAGCAGCCTTGGAGACAAGACTCACAGTAAGACA------------------------TTTTG-TTGCT-------G-------TCTACAAAGTTGTTCTCTGTGAGTCTTTTATATCCAGCTGTCTCAGGGACCATGGCTTCTGCCCATCAGAATGTT----------TCCCTGTTGTTGTTTGTATAATCCCATACAAATAACTCACTAACTTCTTATTTATCAGC-----AATAAGCTCTCCTTCAGTTTTATTTGGTTGTGTTGCTACATTCAAACGTGCTTCCTGCTGCCATTT i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M a score=164535.000000 s hg38.chr17_JH159146v1_alt 154417 59 + 278131 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATGTAGACACATCCATACtgtatt s panTro4.chr17 66274966 59 - 82630442 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATATAGACACATCCATACtgtatt i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48030614 59 - 81552678 CAAAATGGCGTCAGTGTAGTTTTCCACTTAC----TCACATGTGGACACATCCATATtgtatt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53135128 59 + 80904711 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATGTAGACACTTCCATATtgtatt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52659362 59 + 80997621 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATGTAGACACTTCCATATtgtatt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47703067 59 + 74645514 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATGTAGACACTTCCATATTGTCTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9969951 59 - 75148670 CAAAATGGTGTCAGTGTAGTTTTCCACTTAC----TCACATGTAGACACATCCATATtgtatt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112842464 59 + 159171411 CAAAATGGTGTTGGTGTAGTTCTCCACTTCA----TCACATGTAGACACATCCATATtgtatt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39389412 60 - 61074082 CAAAATGGTATCAGTGTAGTTCTTCACTTACTCAATCACAGGTAAATACTTC---ACTGTCTT i canFam3.chr9 C 0 I 3629 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99559709 5163 + 122082543 I a score=322792.000000 s hg38.chr17_JH159146v1_alt 154476 147 + 278131 agtctgttctcatgctgctatagggacatacccgagattgggtaatttataaaggaaagaagtttaatggactcacagtAGAcccacctcagcctcccaaagtgctgggattacaggcacgagtcgctgtgcctggccTCAATAACA s panTro4.chr17 66275025 147 - 82630442 agtctgttctcacgctgctatagggacataccgaagattgggtaatttataaaggaaagaagtttaatggactcacagtAGAcccacctcagcctcccaaagtgctgggattacaagcacgagtcgctgtgcctggccTCAATAACA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48030673 147 - 81552678 agtctgttctcacgctgctatagggacatacccgagattgggtaatttataaaggaaagaagtttaatggactcacagtagacccacctcggcctcccaaagtgctgggattacaggcatgagacgctgtgcctggccTCAATAACA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53135187 146 + 80904711 agtcagttctcacgctgctatagggacatacccgagattgggtaatttataaaggaaagaa-tttaacagactcacagtAGAcccacctcggcctcccgaagtgctgggattacaggcatgagccactgcgcccagccTCAAGATCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52659421 147 + 80997621 agtcagttctcacgctgctatagggacatacccgagattgggtaatttataaaggaaagaagtttaacagactcacagtAGAcccacctcggcctcccgaagtgctgggattacaggcatgagccactgcgcccagccTCAAGATCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47703126 133 + 74645514 AGTcagttctcacgctgctataggGACATACCCG--------------ATAAAGCAAAGAAGTTTAACAGACTCACAGTagacccacctcggcctcccgaagtgctgggattacagacatgagccactgcacccagcctcaagaaca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9970010 147 - 75148670 agtcagttctcacgctgctatagggacatacccgagattggataatttataaaggaaagaagtttaacggactcacagtAGAcccacctcagcctcccgaagtgctgggattacaggcatgagccactgtgcccggccTCAAGAACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112842523 147 + 159171411 agtctgttctcatgctgctataaggacatacccgaggctgggtgatttataaaagagagaggtttaatggattcacagtAGacctgcctcggcctcccaaagtactgagatgacaagcatgagccactgcgcccagccTCAGGAACA i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39389472 3629 - 61074082 I e mm10.chr11 99559709 5163 + 122082543 I a score=484983.000000 s hg38.chr17_JH159146v1_alt 154623 195 + 278131 ATTTGAAGGAAAAATGAAATATCTTG-TTTT----TTATTATATTATCAAGGATAAACAATTATTAATGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCT-----GAAGTTGAACT-GAAAATGTGTTTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATGCAGCCAATATTTCTTCTCTGCTGACACTGCT s panTro4.chr17 66275172 196 - 82630442 ATTTGAAGGAAAAATGAAATATCTTGTTTTT----TTATTATACTATCAAGGATAAACAATTATTAATGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCT-----GAAGTTGAACT-GAAAATGTGTTTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATTTCTTCTCTGCTGACACTGCT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48030820 200 - 81552678 ATTTGAAGGAAAAATGAAATACCTTGTTTTT----TTATTATATTATCAAGGATAAACAATTATTAATGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCT-----GAAATTGAACT-GAAAATGTGTTTGAGTTGCCAGACATTCTGCATTTCAATTCAAAGTGAATTAATGATCCAGCCAATATTTCTTCTCTGCTGACTCTGCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53135333 199 + 80904711 ATTTGAAGGAAAAATGAAATACCat--tttttaaattattatattatCAAGGATAAACAATTATTAACGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCTCATCAGAA----AACT-GAAAATGTGTTTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATTTCTTCTCTGCTGACACTGCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52659568 199 + 80997621 ATTTGAAGGAAAAATGAAATACCAT--TTTTTAAATTATTATATTATCAAGGATAAACAATTATTAACGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCTCATCAGAA----AACT-GAAAATGTGTTTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATTTCTTCTCTGCTGACACTGCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47703259 198 + 74645514 atttgaaggaaaaatgaaatacca---ttttaaaattattatattaacaaGGATAAACAATTATTAACGTTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCTcatcagaa----aact-gaaaatgtgttTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATTTCTTCTCTGCTGACACTGCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9970157 199 - 75148670 ATTTGAAGGAAAAATGAAATACCAT--TTTTTAAATTATTATATTATCAAGGATAAACAATTATTAACATTAAGGGCAG-TTGTTTT-ACCTTGA------TTATTGATGCTCATCAGAA----AACT-GAAAATGTGTCTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATTTCTTCTCTGCTGACACTGCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112842670 197 + 159171411 ATTTGAAGGAAAAATGAAATACCTTGTTTTT----CTATTACATTATCAAGGATGAACAGTTATTAACTTTAAGGGCAG-TCGTTTT-ACCTTGA------TTATTGATGCTCGTCAGAA----AACT-GAAAATGTGTTTGAGTTGCCAAACATTCTGCATTTCAATTCAAAG----TTAATGATCCAGCCAATATGTCTTCTCTGCTGAAACTGCT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39393101 165 - 61074082 ATTTGAAAGAAAAATGAA-------------------------------------AACAATTATTAACTTTACAGGTAGCTTGTTTTCACTTTGAACTGGGTTATTGAAACTCCTCAGAA----AATTAAAAAATGTGTTTGAGTTGCCAAACATTTTGTATTTCAGCGCAAGG----TTAATGACCCA--------TTAACCTGTGTGAAGGTTGCT i canFam3.chr9 I 3629 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99559709 5163 + 122082543 I a score=730848.000000 s hg38.chr17_JH159146v1_alt 154818 362 + 278131 AATCAG-----TAAAGTCTGACTTTTTAAAAAA----GGTTTGTTCTTAACTTAGAAACACGGATACCTTTTTTAATACTCATTGTATACACTCATTTTATTTTAGACTATAATCACCACAGAGAAAACAGA------GAAAACAACAAAAGATACAATTGACAGGGATAGTAGAGAATATATTGTCAAGTGTCATATAC-TTTCTCCTGAATAAAGAGAGCCACCTATAGTCACATTTCTCTTTGACATATTGCTGTCTGTGGggaaggtgagtgctttggtgtagtggaaagagaagggacttcggactt-----agtttggggtttaagtccttctctctcacttatgattt-atgtaacttttgcaagtaatttagtctt s nomLeu3.chr19 48031020 368 - 81552678 AATCAG-----TAAAGTCTGACTTTTTAAAAAA----GGTTTGTTCTTACCTTAGAAACATGGATACCTTTTTTAATACTCATTGTATACACTCATTTTATTTTAGACTATAATCACCACAGAGAAAGCAGAGCTGCTGTGTACAACAAAAGATACAACTGACAGGGATAGTAGAGAATATATTGCCAAGTGTCATATAC-TTTCTCCTGAATAAAGAGAGCCACCTATAATCCCATTTCTCTTTGACATATTGCTGTCTGTGGGGAAGGTGAGTGCTTtggtgtcgtggaaagaaaagggacttgggactt-----agtccagggtttaagtccttctgtctcacttatgattt-atgtaacttttgcaagtaatttagtctt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53135532 364 + 80904711 AATCAG-----TGAAGTCTGACTTTTTAAAAAA----GGTTTGTTCTTACCTTGGAAACATGAATACCTTTTTAAATACTCATCGTATACCCTCATTTTATTTTAGACTGTAATCGCCACAGAGAAAGCAGAGCTGCTGTGTACAACAAAACATACAATTGACAGGGATAGTAGAGAATATATTGTCAAGTGTCATGTAC-TTTCTCCTGAATAAAGACAGCCACCTATAATCACATTTCTCTTTGACATATTGCTGTCTGTGGagaaggcgagtgctttggtgtagtggaaagagaagggacttgggactt-----agtttggggtttaattccttctctctc----acgattt-acataacttttgcaagtactttagtctt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52659767 364 + 80997621 AATCAG-----TGAAGTCTGACTTTTTAAAAAA----GGTTTGTTCTTACCTTGGAAACATGAATACCTTTTTAAATACTCATCGTATACCCTCATTTTATTTTAGACTGTAATCGCCACAGAGAAAGCAGAGCTGCTGTGTACAACAAAACATACAATTGACAGGGATAGTAGAGAATATATTGTCAAGTGTCATGTAC-TTTCTCCTGAATAAAGACAGCCACCTATAATCACATTTCTCTTTGACATATTGCTGTCTGTGGagaaggcgagtgctttggtgtagtggaaagagaagggacttgggactt-----agtttggggtttaattccttctctctc----acgattt-acataacttttgcaagtactttagtctt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47703457 368 + 74645514 AATCAG-----TGaagtctgactttttaaaaaa----ggtttgtTCTTACCTTGGAAACATGAATACCTTTTTAAATACTCATCGTATaccctcattttattttagactgtAATCGCCACAGAGAAAGCAGAGCTGCGGTGTACAACAAAACATACAATTGACAGGGATAGTAGAGAATATATTGCCAAGTGTCATATAC-TTTCTCCTGAATAAAGACAGCCACCTATAATCACATTTCTCTTTGACATATTGCTGTCTGTGGAGAAGGCGAGTGCTTTGGTGTAGTGGAAAGAGAAGGGACTTGGGACTT-----AGTCTGGGGTTTAATTCCTTCTCTCTCACTTACGATTT-ACGTAACTTTTGCAAGTACTTTAGTCTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9970356 368 - 75148670 AATCAG-----TAAAGTCTGACTTTTTAAAAAA----GGTTTGTTCCTACCTTGGAAACATGAATACCTTTTTAAATACTCATTGTATACCCTCATTTTATTTTAGACTATAATCGCCACAGAGAAAGCAGAGCTGCTGTGTACAACAAAACATACAATTGACAGGGATAGTAGAGAATATATTGTCAAGTGTCATATAC-TTTCTCCTGAATAAAGACAGCCACCTATAATCACATTTCTCTTTGACATATTGCTGTCTGTGGagaaggcgagtgctttggtgtagtggaaagagaagggacttgggactt-----agtttggggtttaattgcttctctctcccttatgattt-acgtgacttttgcaagcactttagtctt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112842867 361 + 159171411 AATCAG-----TAAAGTCTGACTTTTTAGGAAA----GATTTGTTCTTACCTTAGAAACACAGATACCTTTTTT-ATACTCATTGTATGCACTCAGTTTATTTTACACTATAATCACCACAGAGAAAGCACAGTTGCTGTGTACAACAAAAGATACAATTGACAGG-------GAAAATGTATTGTCAAGCGTCATATAC-TTTCTCCTGAATAAATAGAGCCACCAATAACCACATTTCTCTTTGACATACTGCTGTCTGTGGagaaggtgagcgctttggtgtagtgggaagaggagggactttggactt-----ggtttggggtttaattccttctctctcacttatgacttaacttgtgttttgcaagtaatttaatcat i calJac3.chr5 C 0 C 0 s canFam3.chr9 39393266 379 - 61074082 AATCAGTATTTTAAAGTCTGGCTGAAAAAAAAAAGATGATTTGTTTTCACCTTAGAAACACAAAGAGCTTTTCCTAGACTCTTTGTATGTACTCATTTTGCCTTAGACTGTAATCACCCCAGAGAAAGT-GAGTTACTATATACAACCAAATATACAATTTAGGGGGCCAGAAGAAAATGTACTGTTAAGTGGCATATACTTTTCTCCTGGATAAAGAGAGCCACATGTAATC-CATTTATCTCGGGCATATTGCTGTCTGCAAAGGAAGTGTGTGCTTtggtgtagaggaaagagaagcagcttttggattcaggcagttttaggtttaatccccactcaatcacttactattt-gtgtaactttttcgagt--ctcagtttt i canFam3.chr9 C 0 I 92 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99559709 5163 + 122082543 I e panTro4.chr17 66275368 0 - 82630442 C a score=907160.000000 s hg38.chr17_JH159146v1_alt 155180 512 + 278131 tctcagcctgagtttctgcacctgtTAGTGGCCTTTCTTCACCTGTTAGtgatgcagggcaggggagccccaaagtggggcttagcctgcaagggttcttggctttgcctagggaagaattcaagggcaagccagaggtagaaaacagctttattgaagcagcagtgttacagctctgtgattgctcctgcagaacagggctacctctgtaggcagagagtagcagctcagggcagttttgcatatttctacctacttttaattagatgtagattaaagagtggtttgtgcagaaatttctaa-gaaggagtagtaagttttaggtcattgggtcattgccatggaaaggggtggtaactcaggtgttgccatggcaatggtaaattgacacagcatgctggtgggcatgtctgattggaaagctgtttctgtccccatcctgttttagctagccctcaatttggtccagtatctgagccccgcttctggagtagagtcccaccttctacctc s nomLeu3.chr19 48031388 512 - 81552678 tctcagcctgagtttctgcacctgtTAGTGGCCTTTCTTCACCTGTTAGTTatgtagggcaggggaaccccaaagtggggcttagcctgcaagggttcttggctttgcctagggaagaattcaagggcaagccagaggtagaaaacagctttactgaagcagcagtgttacagctccgtgactgctcctgcagaacagggctacctctgtaggcagagagtagcagctcagggcagttttacatatttctacctacttttaattagatgtagattaaagagtggtttgtgcagaaatttctaaggaaggagtagtaagttttaggtcattgggtcattgccatggaaaggggtggtaactcaggtgttgccatggcaacggtaaattgacatggcatgctggtgggcatgtctgattggaaagatgtttctgtctccatcctgttttagctagccctcaatttggt-cagtatctgagccccacctctggagtagagtcccaccttctacctc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53135896 512 + 80904711 tctcagcctgagtttctgcacctgtTAGTGGCCTTTCTTCACTTGTTAGtgatgcagggcaggggagccccaaagtggggcttagcctgcaagggttcttggctttgaccaggggagaattcaagggcaggccagaggtagaaaacagctttattgaagcagcagtgttacagctccatgactgctcctgcag-acagggctacctctgcaggccgagagtagcagctcagggcagttttacatatttacacctacttttaattagatgtagattaaagagtagtttgtgcagaaatttctagggaaggagtagaaacttttaggtcattgggtctttgccttggaaaggggtggtaactgaggtgttgccatggcaacggttaattgacagggcatgctggtgggcatgtctgattggaaagctgtttctgtccccatcctgttttagctagccctcaatttggtctggtatctgagccccacctctggagtagagtcccaccttctacctc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52660131 512 + 80997621 tctcagcctgagtttctgcacctgtTAGTGGCCTTTCTTCACTTGTTAGtgatgcagggcaggggagccccaaagtggggcttatcctgcaagggttcttggctttgcccagggaagaattcaagggcaagccagaggtagaaaacagctttattgaagcagcagtgttacagctccatgactgctcctgcag-acagggctacctctgcaggccgagagtagcagctcagggcagttttacatatttacacctacttttaattagatgtagattaaagagtagtttgtgcagaaatttctagggaaggagtagaaacttttaggtcattgggtctttgccttggaaaggggtggtaactgaggtgttgccatggcaacggttaattgacagggcatgctggtgggcatgtctgattggaaagctgtttctgtccccatcctgttttagctagccctcaatttggtctggtatctgagccccacctctggagtagagtcccaccttctacctc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47703825 512 + 74645514 TCTCAGCCTGAGTTTCTGCACCTGTTAGTGGCCTTTCCTCACTTGTTAGTGATGCAGGGTAGGGGAGCCCCAAAGTGGGGCTTAGCCTGcaagggttcttggctttgcccagggaagaattcaagggcaagccagaggtagaaaacagctttattgaagcaGCAGTGTTATAGCTccatgactgctcctgcag-aCAGGGCTACCTCTGTAGGCggagagtagcagctcagggcagttttACATATTTACACCTACTTTTAATTAGATGTAGATTAAAGAGTAGTTtgtgcagaaatttctagggaaggAGTAGAAACTTTTAGGTCATTGGGTCTTTGCCttggaaaggggtggtaactcaGGTGTTGCTATGGCAACGGTTAATTGACAGGGCATGCTGGTGGGCATGTCTGATTGGAAAGCTGTTTCTGTCCCCATCCTGTTTTAGCTAGCCCTCAATTTGGTCTGGTATCTGAGCCCCACCTCTGGAGTAGAGTCCCACCTTCTACCTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9970724 513 - 75148670 tctcagcctgagtttctgcacctgtTAGTGGCCTTTCTTCACTTGTTAGtgatgcagggtaggggagccccaaagtggggcttagcctgcaagggttcttggctttgcccagggaagaattcaagggcaagccagaggtagaaaacagctttattcaagcagcagtgttatagctccatgactgctcctgcagaacagggctacctctgtaggccgagagcagcagctcagggcagttttgcatatttacacctacttttaattagatgtagattaaagagtggtttgtgcagaaatttctagggaagaagtagaaacttttaggtcattgggtcttcgccatggaaaggggtggtaactcaggtgttgccatggcaacagttaattgacagggcatgctggtgggcatgtctgattggaaagctgtttctgtccccatcctgttttagctagccctcagtttggtctggtatctgagccccacctctggagtagagtcccaccttctacctc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112843228 504 + 159171411 tctcagcctgagtttctgcacctgtTAGTACACTTACTGCACCTGTTGGtgatgcagggcaggtaaacaccaaagtggggcttagcctgcaaggatttttggctttgctcagagaaaaattcaagggcaagccagagggagaaaacagctttattgaagcagcagggttatagctccatgactgctcctgcagaacagggctgcctctgtaggcagagagtagcggctcggagcagttttgcatctttatacctacttttaattacatgaagattgaagagtggtttgtgcagagatttctagggaagcagtagtaattttcaggtcattgggtcattgccctggaaaggggtggcaactcaggtgttgccatggcaacggtagattgacacagcac--------gcatgtctgattggaaagctgtttctgtcctcacgctgttttagctagtcctcaatttggtcgagtatctgag-cccacctctggagtagagtcccaccttctacctc i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39393645 92 - 61074082 I e mm10.chr11 99559709 5163 + 122082543 I e panTro4.chr17 66275368 0 - 82630442 C a score=1258449.000000 s hg38.chr17_JH159146v1_alt 155692 612 + 278131 aTT----AGTATGTCCAGTAGATACTCACTCAGTGTGAGCTATTCCTAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCATGGGG--TACTTGTTACTTAGAATGCTTCTGGATGATCtagaatcatagaatgttaaaacgaaaagcaaccttagagatggtgtgatcaaccaacccattttactgctttaacacctgagaccccaagaacttaattgacttgcttagggccacagaggcagctcaag-gcagagccaggactaaaacaacacatcttctggtt-----tccagttggggatttataactagg--ccaGGGCCCGTGAATG-CTAAAGA-CCATGGTAGTAGTAATAGGA-ACTTCGAGTTATTTTAGGTATTAAAAACAAACTCT-AATTTTTATCCCTTACTAGCATGTATGAAAACATGAAA-ATTCTTTGTTTTTGACTAGAAAAAAGGTAACTTGGCATGGTAACAAAGGTTATTCTATAGTAATCCTAAACATTTAATTGATATTTATAAATGTATTTATGAACACAAATGAAGGAATTAATAAACATTTTTAAGAAAGCCATTTGGGAAAAAT-ACATATTTCAAGAAATAAAAAGATGC s nomLeu3.chr19 48031900 610 - 81552678 aTT----AGTATGCCCAGTAGATATTCACTTAATGTGAGCTATTCCTAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCATGCGG--TACTTGTTACTTAGAATGCTTCTGGATGATCtagaatcatagaatgttaaaacgaaaagcaaccttagagatggcctgatcaaccaacccattttactgctttaacacccgagaccccaataacttaattgacttgcttagggccacagaggcagctcaag-gcagagccaggactaaaacag--------ccagttataaatccagCTGGGGATTTATAACTAGG--CCAgggcccatgaatg-ctaaaga-ccatggtagtagtaatagga-acttcgagttatgttaggtattaaaaacgaactctaaatttttatcccttactagtatgtatgaaaacatgaaa-gttctttgtttttgactagaaaaaaggtaacttggcatggtaacaaaggttattctataataatcctaaacatttcattgatatttatacatgtatttATGAACACAAATGAAGGAATTAATAAACATTTTTAAGAAAGCCATTTGGGAAAAAT-ACATATTTCAAGAAATAAAAAGATGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53136408 614 + 80904711 aTT----AGTATGCCCAGTAGGTATTCACTCAATGTGAGCTATTCCCAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCATGGGG--TACTTGTTACTTAGAATGCTTCTGGATGATCtagaatcatagaatgttaaaacgaaaagcaaccttagagatggtctgattaaccaacccattttactgctttaacacctgagaccccaagaacttaattgacttgtttagggccacagaagcagctcaag-gcagagccagggctaaaacaacacatcttctggtt-----tccagtTGGGGATTTATAACTAGG--CCAgggcccgtgaatg-ctaaagacccatggtagtagtagtagga-acttcgagttattttcagtattaaaaacaaactctaaatttttatcccttactagcatgtatgaaaacatgaaa-cttctttgtttttgactaggaaaaaggtaacttggcatggtaacaaaggttattctataataatcctaaacatttcattgatatttataaacatatttatgaacaaaaaTGAAGGAATTATTAAACTTTTTTAAGAAAGCCATTTGGGAAAAAT-ACATATTTCAAGAAATAAAAAGATGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52660643 614 + 80997621 aTT----AGTATGCCCAGTAGGTATTCATTCAATGTGAGCTATTCCCAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCATGGGG--TACTTGTTACTTAGAATGCTTCTGGATGATCtagaatcatagaatgttaaaacgaaaagcaaccttagagatggtctgattaaccaacccattttactgctttaacacctgagaccccaagaacttaattgacttgtttagggccacagaagcagctcaag-gcagagccagggctaaaacaacacatcttctggtt-----tccagttggggatttataactagg--ccaGGGCCCGTGAATG-CTAAAGACCCATGGTAGTAGTAGTAGGA-ACTTCGAGTTATTTTCAGTATTAAAAACAAACTCTAAATTTTTATCCCTTACTAGCATGTATGAAAACATGAAA-CTTCTTTGTTTTTGACTAGGAAAAAGGTAACTTGGCATGGTAACAAAGGTTATTCTATAATAATCCTAAACATTTCATTGATATTTATAAACATATTTATGAACAAAAATGAAGGAATTATTAAACTTTTTTAAGAAAGCCATTTGGGAAAAAT-ACGTATTTCAAGAAATAAAAAGATGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47704337 614 + 74645514 ATT----AGTATGCCCAGTAGGTATTCACTCAATGTGAGCTATTCCCAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCACGGGG--TACTTGTTACTTAGAATGCTTCTGGATGATCTAGAATCATAGAACGTTAAAACGAAAAGCAACCTTAGAGATGGTCTGATTAACCAACCCATTTTACTGCTTTAACACCTGAGACCCCAAGAACTTAATTGACTTGTTTAGGGCCACAGAAGCAGCTCAAG-GCAGAGCCAGGGCTAAAACAACACATCTTCTGGTT-----TCCAGTTGGGGATTTATAACTAGG--CAAGGGCCCGTGAATG-CTAAAGACCCATGGTAGTAGTAGTAGGA-ACTTCGAGTTATTTTCAGTATTAAAAACAAACTCTAAATTTTTATCCCTTATTAGCATGTATGAAAAcatgaaa-cttctttgtttttgactAGAAAAAAGGTAACTTGGCATGGTAACAAAGGTTACTCTATAATAATCCTAAACATGTCGttgatatttataaatgtatgtatgaacaaaaatgaaggaattattaaacttttttaagAAAGCCATTtgggaaaaat-acatatttcaagaaataaaaagatgc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9971237 614 - 75148670 aTT----AGTATGCCCAGTAGGTATTCACTCAATGTGAGCTATTCCCAATGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGCTTGGTTAGTTGCACGGGG--TACTTGTTACTTAGAATGCTTCTGGATGATCtagaatcacagaatgttaaaatgaaaagcagccttagagatggtctgattaaccaacccattttactgctttaacacctgagaccccaagaacttaattgacttgtttagggccacagaagcagctcaag-gcagagccagggctaaaacaacacatcttctggtt-----tccagttggggatttataactagg--ccagggcccgtgaatg-ctaaagacccatggtagtagtagtagga-acttcgagttattttcagtattaaaaacaaactctaaatttttatcccttactagcatgtatgaaaacatgaaa-cttctttgtttttgactaggaaaaaggtaacttggcatggtaacaaaggttattctataataatcctaaacatttcattgatatttataaatgtatttatgaacaaaaaTGAAGGAATTATTAAACTTTTTTAAGAAAGCCATTTGGGAAaaat-acatatttcaagaaataaaaagatgc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112843732 615 + 159171411 aTTCGAAAGCATGCCCAGTAGATAGTCACTCAATGTGAGCTGTTCCTAACGAAAGCAG---TAAAAGTAATGAGGTAGAATGGGGTTGGTTAGTTGCATGGGG--TACTTGTTACTTCGACTGCTTCTGGATGATCtagaatcacagaatgataaactgaaaagcaaccttagagatggtctgatcaaacaactcattttactgatttaacacttgagaccccgagaaattaactgacttgctcagggccacagaggcagctcaag-gcaaagccagggctaaaataacacatcttctggtt-----tccagtTGGGGATTTATAACTAGA--AAAgggcccttgaatg-caaaaggcccatagtagtagtaatagga-gcttcaagttatttccagcattaaaaataaactctcaatttttatccc----taacatgtatgaaaacatgaaagctactttgtttttgactagaaaaaaggtaacttggcgtggtaacaaaggttatcctataataatcctaaacatttcattgatatttataaatgtatttctgaaaaaaaatgaagGGATTAATAAACTTTTTTAAGAAAGTCATTTGGGAAAAAT-ACATATTTCAAGAAATAAAAAGATAC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39393737 588 - 61074082 att----agaatacccaatagatattcaccaaatgttagctattatGAATGAAAGTAGCACTAAAAGTGATCAGGTGGGATGCAGTTGGTTAGTGGCATGGAGTATACTTGTTACTTAAAATGCTTCTGGATAACCtaggaccgtagaatgttaaagctgaaagtctctctagagaaattctggtcaacaagcctgtttgactgatttaagacctgagacccacagaactcaagtgactggctcagggccaca-aggcagcttaggagcagagcCA------------CACAT---CTGTGT-----TCCATCTGGGTCATTTAAATTAGTGCCAAGGGTCTTTGAGTGCCTAAAGGTCCACAGTGGTATTTCTAGGACACTCAGATTTACTTTCAGTATTAAAAATAAAATCTAAATATTTAACCCTTACAAACATATATGAAAATGTCAAA-ATTCTTTGCTTATGACTA-AAAAAAGGAAACTTGG-------------------GCATATTAATCCTAAAATTCTCACCAATGCTTATGAATGTATTTATGAACAAACATGAAGGAAGAAATGGGTTATTTTAC-AAAGGTATGTGGAAAAAATAATATTTTTCAAAGAATAAGAGGATGC i canFam3.chr9 I 92 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99559709 5163 + 122082543 I e panTro4.chr17 66275368 0 - 82630442 C a score=115501.000000 s hg38.chr17_JH159146v1_alt 156304 80 + 278131 Ccaacctacgtatccatcatccaatgagtggatagagaaactgtggta------tgtatacaccatggaa---tactactcagctgtta s nomLeu3.chr19 48032510 80 - 81552678 Ccaacctaagtatccatcatccaatgagtggatagggaaactgtggta------tatatacaccatggaa---tactactcagctgtta i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53137022 86 + 80904711 Ccagcctaagtatccatcatccaatgagtagatagagaaactgtggta--tatatatatataccgtggaatactactactcagctgtt- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52661257 79 + 80997621 CCAGCAT-------catcatccaatgagtagatagagaaactgtggtg--tatatatatataccgtggaatactactactcagctgtt- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47704951 84 + 74645514 cTAGCCTAAGTATCCATCATCCAATGAGTAGATAgagaaactgtggtg--tatatatatataccatggaa---tactactcagctgtTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9971851 86 - 75148670 ccagcctaagtatccatcatccaatgagtggatagagaaactgtggtgtatatatatatataccgtggaa---tactactcagctgtta i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112844347 80 + 159171411 Ccaacctaagtgtctgtcattcaatgagtggatagagaagctgtggta------tttgtacaccatggaa---tactcctcagcagtta i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39394325 0 - 61074082 C e mm10.chr11 99559709 5163 + 122082543 I e panTro4.chr17 66275368 0 - 82630442 C a score=647668.000000 s hg38.chr17_JH159146v1_alt 156384 283 + 278131 aagggaatgaaacaatgtcttttgtggcaacttggatggagctggaggccattattctgagtgaaatggagtgggaaattacaggaatggaaaacaaaaaacc--atgttttcacttataagtgggagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaagtggagggtgggagggaggccagggataaaacactacacattagctaccatgtatactccttgggt-acgggtgcactaaaatctcagaattcaccacca s panTro4.chr17 66275368 283 - 82630442 AAGGgaatgaaacaatgtcttttgtagcaacttggatggagctggaggccattattctgagtgaaatggagtgggaaattacaggaatggaaaacaaaaaacc--atgttttcacttataagtgggagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaagtggagggtgggagggaggccagggataaaacactactcattagctaccatgtatactccttgggt-acaggtgcactaaaatctcagaattcaccacca i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48032590 283 - 81552678 aagggaatgaaacaatgtcttttgcagcaacttggatggagttggaggccattattctgagtgaaatggagtgggaaatcacaggaatggaaaataaaaaacc--acgttttcacttgtaagtgggagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaggtggagggtgggagggaggccaaggataaaacactacatattagctaccatgtatactcctcgggt-acgggtgcactaaaatctcagaattcaccacca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53137108 280 + 80904711 ---agaatgaaacaatgtcttttgctgcaatttggttggagctagaggccattattctgagtgaaatggagtgggaaatcacaggaaccaaaaacaaaaaacc--atgttttcacttataagtggaagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaggtggagggtgggaagcaggccaggaacaaaacaccactcattaggtacgatgtatactcctcgggt-acgggtgtaccaaaatctcagaattcaccatca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52661336 280 + 80997621 ---agaatgaaacaatgtcttttgctgcaatttggttggagctagaggccattattctgagtgaaatggagtgggaaatcacaggaaccaaaaacaaaaaacc--atgttttcacttataagtggaagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaggtggagggtgggaagcaggccaggaacaaaacaccactcattaggtacgatgtatactcctcgggt-acgggtgtaccaaaatctcagaattcaccaTCA i macFas5.chr16 C 0 M 40898 s papAnu2.chr16 47705035 283 + 74645514 AAGAGAATGAAACAATGTCTTTTGCTGCAAtttggatggagctagaggccattattctgagtgaaatgGAGTGGGAAATCACAGGAAccgaaaacaaaaaacc--atgttttcacttataagtggaagctaaactaAGTATGCAGATGCATAtggagtgatataatggactttagagactcaaaaggtggagggtgggaaccAGGCCAGGAACAAAACACTACGCATTAGGTACGATGTATACTCCTCGGGT-Acgggtgtaccaaaatctcagaattcaccacca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9971937 283 - 75148670 aagagaatgaaacaatgtcttttgctgcaatttggatggagctagaggccattattctgagtgaaatggagtgggaaatcacaggaactgaaaacaaaaaacc--atgttttcacttataagtggaagctaaactaagtatgcagatgcatatggagtgatataatggactttagagactcaaaaggtggagggtgggaggcaggccaggaacaaaacactacacattaggtacgatgtatactcctcgggt-acaggtgtaccaaaatctcagaattcaccacca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112844427 283 + 159171411 aaaggaataaaac--tgtcttttgcagcaacttggatggagctggaggccattattctgagtgaagtggag-gggaaaccacaggaatgaaaaaccaaaaaccatatgttttcacttataagtgggagctaaactaagtgtgcagaggcatacggagtgatataatgaactttagaggtttgaaaggtggagggtgggagggaggccagggataaaaccctgcatactaggtaccacgtatactcctcaggtgacaggtgcaataaaatctcagaattcaccacca i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39394325 0 - 61074082 C e mm10.chr11 99559709 5163 + 122082543 I a score=105316.000000 s hg38.chr17_JH159146v1_alt 156667 69 + 278131 ctatataattcatccatgtaaccaaaaaccacctgtaacccaaaagctaCGGaaataaataaataaata s panTro4.chr17 66275651 69 - 82630442 ctatataattcatccatgtaaccaaaaaccacttgtaacccaaaagctaCAGaaataaataaataaata i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48032873 69 - 81552678 ctatgtaattcatccatgtaaccaaaaaccacttgtaccccaaaagctactgaaataaataaataaata i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53137388 68 + 80904711 ctgtgtaattcatccatgtaacc-aaaaccacttgtaccccaaaagctactgaaataaacaaataaata i rheMac3.chr16 C 0 C 0 s papAnu2.chr16 47705318 68 + 74645514 ctgtgtaattcatccatgtaacc-aaaaccacttgtaccccaaaagctactgaaataaacaaataaata i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9972220 69 - 75148670 ctgtgtaattcatccatgtaaccaaaaaccacttgtaccccaaaagctactgaaataaataaataaaca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112844710 69 + 159171411 ctatataattaatctatataactaaaacccatgtatcaccccaaagctactaaaatacctaaatacata i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39394325 0 - 61074082 C e mm10.chr11 99559709 5163 + 122082543 I e macFas5.chr16 52661616 40898 + 80997621 M a score=10820.000000 s hg38.chr17_JH159146v1_alt 156736 7 + 278131 aataaat s panTro4.chr17 66275720 7 - 82630442 aataaat i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48032942 7 - 81552678 aataaat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53137456 7 + 80904711 aacaaac i rheMac3.chr16 C 0 I 4 s papAnu2.chr16 47705386 7 + 74645514 aacaaac i papAnu2.chr16 C 0 I 4 s chlSab2.chr16 9972289 7 - 75148670 aataaat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112844779 7 + 159171411 catacat i calJac3.chr5 C 0 I 4 s mm10.chr11 99564872 7 + 122082543 AAAAAAT i mm10.chr11 I 5163 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39394325 0 - 61074082 C e macFas5.chr16 52661616 40898 + 80997621 M a score=33792.000000 s hg38.chr17_JH159146v1_alt 156743 19 + 278131 aaata----TTTTT-------AAAAGATGT s panTro4.chr17 66275727 23 - 82630442 aaataaataTTTTT-------AAAAGATGT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48032949 15 - 81552678 a--------TTTTT-------AAAAGATGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53137467 19 + 80904711 aaaTA----TTTTT-------AAAAGCTGC i rheMac3.chr16 I 4 C 0 s macFas5.chr16 52702930 19 + 80997621 AAATA----TTTTT-------AAAAGCTGC i macFas5.chr16 M 40898 C 0 s papAnu2.chr16 47705397 19 + 74645514 aaata----ttttt-------aaaagctgc i papAnu2.chr16 I 4 C 0 s chlSab2.chr16 9972296 19 - 75148670 aaata----TTTTT-------AAAAGCTGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112844790 19 + 159171411 acata----TTTTT-------AAAAGATGC i calJac3.chr5 I 4 C 0 s mm10.chr11 99564879 26 + 122082543 GCATG----TTTTTCCAAATGGAAGAATGT i mm10.chr11 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39394325 0 - 61074082 C a score=590986.000000 s hg38.chr17_JH159146v1_alt 156762 248 + 278131 CTTTTGGTGAGAAAGTTGGGAACTTCCATATGGCAGTAATGGTGAGAGTCTCTCATGTGTAAcaggttgatgctgtggacacggtggtttctacacttcagggcatctggtcctcacaataatcctgagac------aaaagcagggcagAGAGTAATAACAAGCTAACTGAGCCTGTAGGAAACCAAGCTATAGGTAGGAAACCACGCTATAGGTAGGAAATCACTTTAATAACAGGGAAATTGAGACTGAGA s panTro4.chr17 66275750 248 - 82630442 CTTTTGGTGAGAAAGTTGGGAACTTCCATATGGCAGTAATGGTGAGAGTCTCTCATgtataacaggttgatgctgtggacacggtggtttctacacttcagggcatctggtcctcacaataatcctgagac------aaaagcaaggcagAGAGTAATAACAAGCTAACTGAGCCTGTAGGAAACCAAGCTATAGGTAGGAAACCACGCTATAGGTAGGAAACCACTTTAGTAACAGGGAAATTGAGACTGAGA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48032964 228 - 81552678 CTTTTGCTGAGAAAGTTGGGAACTGCCATATGGCAGTAATGGTGAGAGTCTCTCATGTGTAAcaggttgatgctgtggacacggtggtttctacacttcagggcatctggtcctcacaataatcctgagac------aaaagcaaggcagAGAGTAATAACAAGCTGACTGAGCCTGTAGGAAACCAAGCTATAGATAGGAAACCAC--------------------TTAATAACAGGGAAATTCAGACTGAGA i nomLeu3.chr19 C 0 I 987 s rheMac3.chr16 53137486 229 + 80904711 TTTTTGGTGAGAAAGTTGGGAACTGCCATGTGGCAGTAATGGTGGGAGTCTCTCATGTGTAACAGGTTGATGCTGTGGACATGGTGGTTTCCACACTTGAGGAcgtctggtcctcacaataatcctgagac------aaaagcaaggcagAAAGTAATAACAAGCTAACTGAGACTGTAGGAAACCAAACTATAGGTGGGAAACCAC-------------------TTTAGTAACAGGGAAATTGAGACTGAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52702949 229 + 80997621 TTTTTGGTGAGAAAGTTGGGAACTGCCATGTGGCAGTAATGGTGGGAGTCTCTCATGTGTAACAGGTTGATGCTGTGGACATGGTGGTTTCCACACTTGAGGAcgtctggtcctcacaataatcctgagac------aaaagcaaggcagAAAGTAATAACAAGCTAACTGAGACTGTAGGAAACCAAACTATAGGTGGGAAACCAC-------------------TTTAGTAACAGGGAAATTGAGACTGAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47705416 229 + 74645514 tttTTGGTGAGAAAGTTGGGAACTGCCATGTGGCAGTAATGGTGGGAGTCTCTCATGTGTAACAGGTTGATGCTGTGGACATGGTGGTTTCCACACTTGAGGACATCTGGTCCTCACAATAATCCTGAGAC------AAAAGCAAGGCAGAAAGTAATAACAAGCTAACTGAGACTGTAGGAAACCAAACTATAGGTGGGAAACCAT-------------------TTTAGTAACAGGGAAATTGAGACTGAGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9972315 229 - 75148670 TTTTTGGTGAGAAAGTTGGGAACTGCCATGTGGCAGTAATGGTGAGAGTCTCTCATGTGTAACAGGTTGATGCTGTGGacatggtggtttccacacttcaggacatctggtcctcacaataatcctgagac------aaaaacaaggcagAAAGTAATAACAAGCTAACTGAGACTGCAGGAAACCAAACTATAGGTAGGAAAccac-------------------tttaataacagggaaattgagactgaga i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112844809 227 + 159171411 C-TTTGGTGAGAAAGTTGGGAACTGCCATATGGCAGTAATGCTAAGAGTCTCTCATGTGTCAAAGGTTGATGCTGTGGacacagtgttttctacactttggggcatctggtcctcacaagaatcctgagac------aaaagcaaggcagAGAGT-TTAACAAGAAAACTGAGCCTTCAGGAAACCAAGCTACAGGTAGGAAACCAC-------------------TTTACTAAAAGGGAGATTGAGACTGAAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99564905 219 + 122082543 CTTTTTGGAGTGAAATCTGGAAATATCTGGTAGAAGTCACAGTGAGAGGC-------TGGGACAGCTCACTACTATGAATGAAGTAGTATCTATCCTTTGGGTCATTCAGTCCTTATAGCAGTTTTAAGAC------ATAAGCAGAGGGTAAGATCATAATAAGGTCAGCTAGGCTGTCGGATACCAGGCTACAGATAGCAGgagag----------------------agagagagagagagagagagagaga i mm10.chr11 C 0 I 10 s canFam3.chr9 39394325 178 - 61074082 CTTTTGGTGCGAAAGCTGGGAACCATTATGTGGCAGTAATGGCGAGTGTCTGTCACCATT--TAGAATGGGGCTGTTGACATGTTG--------------GGtcatctgagtctcacaataatcctgaggccaggatacaggcaggggtgggagtattatt-----------------------------------------tctgc-------------------tgtgatgacgagaaaactaaggttgaga i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M a score=61356.000000 s hg38.chr17_JH159146v1_alt 157010 45 + 278131 GGGAAGCAATTGGCCCAAAGGCCAAAGGCAAGT------CCAAAAGTGTGT s panTro4.chr17 66275998 45 - 82630442 GGGAAGCAACTGGCCCAAAGGCCAAAGGCAAGT------CCAAAAgtgtgt i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53137715 40 + 80904711 GGGAAGCAATTGGCCC-----CCAAAGGCAAGT------CTAAAAGTATAT i rheMac3.chr16 C 0 I 39 s macFas5.chr16 52703178 40 + 80997621 GGGAAGCAATTGGCCC-----CCAAAGGCAAGT------CTAAAAGTATAT i macFas5.chr16 C 0 I 16 s papAnu2.chr16 47705645 45 + 74645514 GGGAAGCAATTGGCCCAAAGGCCAAAGGCAAGT------Ctaaaagtatat i papAnu2.chr16 C 0 I 16 s chlSab2.chr16 9972544 45 - 75148670 gggaagcaattggcccaaagGCCAAAGGCAAGC------CCAAAAGtatat i chlSab2.chr16 C 0 I 30 s calJac3.chr5 112845036 45 + 159171411 GGGAAGCAACTGTCCCAAAGGCCAAAGGCAAGTCCCCCCCCAAAA------ i calJac3.chr5 C 0 C 0 s mm10.chr11 99565134 33 + 122082543 gagagagagagagagagagagagagagagagga------------------ i mm10.chr11 I 10 C 0 s canFam3.chr9 39394503 39 - 61074082 gaaaagtgaatggcccaaagtcccaagacaagt------CCAAGA------ i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e nomLeu3.chr19 48033192 987 - 81552678 I a score=-4273.000000 s hg38.chr17_JH159146v1_alt 157055 30 + 278131 GTGTGTGt------atatatatatatatatatataA s panTro4.chr17 66276043 36 - 82630442 gtgtgtgtgtgtgtatatatatatatatatatataA i panTro4.chr17 C 0 C 0 s macFas5.chr16 52703234 28 + 80997621 gtgtgtgtgtgtgtgtgtgtgtATCTAT-------- i macFas5.chr16 I 16 I 1 s papAnu2.chr16 47705706 28 + 74645514 gtgtgtgtgtgtgtgtgtgtgtgtgtat-------- i papAnu2.chr16 I 16 I 1 s chlSab2.chr16 9972619 36 - 75148670 gtgtatatgtgtgtgtatgtgtgtgtatatatatat i chlSab2.chr16 I 30 I 3 s calJac3.chr5 112845081 8 + 159171411 ----------------------------AAATACAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99565167 30 + 122082543 ------gagTAAGAAAATAATTATGCAACTAGATTG i mm10.chr11 C 0 C 0 s canFam3.chr9 39394542 12 - 61074082 --------------AAATAGATGAGA---------- i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e rheMac3.chr16 53137755 39 + 80904711 I e nomLeu3.chr19 48033192 987 - 81552678 I a score=528756.000000 s hg38.chr17_JH159146v1_alt 157085 233 + 278131 TCACAATACCTTTATTTTTTGCAAAGACCTAATTGCACCTAGATTTTTCTAAGATAAATAAGGACAT-------GAATTAGTGGTTATCGTAGTAGTTTTGTT-----CTAATA-GAAAC--------TGTGTGTTTTTGCTCTCAGAATTGTGTGACTATTTCTGGTGTATAGAAAATACTACACTGTAGTCTGATATTTTAAGCATATTTCAATGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT s panTro4.chr17 66276079 241 - 82630442 TCACGATACCTTTATTTTTTGCAAAGACCTAATTGCACCTAGATTTTTCTAAGATAAATAAGGACAT-------GAATTAGTGGTTATCATAGTAGTTTTGTT-----CTAATA-GAAACATAGAAACTGTGTGTTTTTGCTCTCAGAATTGTGTGACTATTTCTGGTGTATAGAAAATACTACACTGTGGTCTGATATTTTAAGCATATTTCAATGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53137794 240 + 80904711 TCACCATACCTTTATTTTCCGCAAAGACCTAATCGCACTTAGATTTTTCTAAGATAAATAAGGACATGAATTAGGAATTAGTGGTTATCGTAGAAGTTTTGTT-----CTAATA-GAAAC--------TGTGTGTTTTTGTTCTCAGAATTGTGTGACTATTTCTGGTGTATAGAAAATACTATACTGTGGTCTGATATTTTAAGTATATTTCATTGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT i rheMac3.chr16 I 39 C 0 s macFas5.chr16 52703263 240 + 80997621 TCACCATACCTTTATTTTCCGCAAAGACCTAATCGCACTTAGATTTTTCTAAGATAAATAAGGACATGAATTAGGAATTAGTGGTTATCGTAGAAGTTTTGTT-----CTAACA-GAAAC--------TGTGTGTTTTTGTTCTCAGAATTGTGTGACTATTTCTGGTGTATAGAAAATACTACACTGTGGTCTGATATTTTAAGTATATTTCATTGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT i macFas5.chr16 I 1 C 0 s papAnu2.chr16 47705735 240 + 74645514 tcaccATGCCTTTATTTTCCGCAAAGACCTAATTGCACTTAGATTTTTCTAAGATAAATAAGGACATGAATTAGGAATTAGTGGTTATCGTAGAAGTTTTGTT-----CTAATA-GAAAC--------TGTGTGTTTTTGCTCTCAGAATTGTGTGACTATTTCTGGTGTATAGAAAATACTACACTGTGGTCtgatattttaagtatatttcatTGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT i papAnu2.chr16 I 1 C 0 s chlSab2.chr16 9972658 238 - 75148670 TCACCATACCTTTATTTTCTGCAAAGACCTAATTGCACTTAGATTTTTCTAAGATAAATAAGGACATGAATTAGGAATTAGTGGTTATCGTAGAAGTTTTGTT-----CTAATA-GAAAC----------TGTGTTTTTGCTCTCAGAATTGTGTGACTATTTCTAGTGTATAGAAAATACTACACTGTGGTCTGATATTTTAAGTATATTTCATTGTCATGATATTATATGT-CACTTAGACTAGCAAACTTCT i chlSab2.chr16 I 3 C 0 s calJac3.chr5 112845089 229 + 159171411 ---TGATATC--TGTTTTCTACAAAGATCTAATTGCACTTAGATTTTTCTAAGACAAATAAGGACAT-------GAATTAGTGGTTATCATAAAAGTTTTGTA-----CTAAGAGGAAAC--------TGTGTCTTTTTGCTCTCGGAATTGTGTGACTGTTTCTGGTGTATAGAAAATACTGCACTGTAGTCTGATATTTTAAGCATATTTCAATGTTGTGATATTATATGT-CACTTAGATTAGCAAACATCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99565197 238 + 122082543 TAGCAGTCTGGGCATTTTCTTGAAAGACCTTACTGTATATAGATTTTTCCATCACAACTAAGGAAAT-------AACATAATGGTCAACACAGAGATTTCTTTTTTCCCTAAGA-GGAA---------TGTTTGTTATATCTATCAGAAGGTCATGGCTATTTCTGTTGTATAAAGAATATTTAATTTTGGTCTAATACATTACAGATATTTCAGTGACATGATAGCATGCATATGCTTGAACCAATCAACTTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 39394554 229 - 61074082 TTGTTCTTTGGATACTTCCTGTAAAAACCTTAT-ACATTTGGAATTTTCCAGGACAACTGAGGAGAT-------GAATTAATGGTCATCATAAAAGTTCTATT-----CTAACA-GGAAC----------TGTGTTTTTGCTTCCAGAATTGTGTG-CCATTTCTGGTGGATGGATAATACTGTGCTATAGCCTGGCATTTTCAGCTTATTTCAACACCATGATACTATATGT-TACTTGGACTACTAAACTTCT i canFam3.chr9 C 0 I 207 e ponAbe2.chr17 24805283 30000 - 73212453 M e nomLeu3.chr19 48033192 987 - 81552678 I a score=42587.000000 s hg38.chr17_JH159146v1_alt 157318 22 + 278131 AATCATAGTCATGACTA--ATGTA s panTro4.chr17 66276320 22 - 82630442 AATCATAGTCATGACTA--ATGTA i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53138034 22 + 80904711 AATCATGGTCATGACTA--ATGTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52703503 22 + 80997621 AATCATGGTCATGACTA--ATGTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47705975 22 + 74645514 AATCATGGTCATGACTA--ATGTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9972896 22 - 75148670 AATCATGGTCATGACTA--ATGTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112845318 22 + 159171411 AATCATAGTCATGACTA--ATGTA i calJac3.chr5 C 0 C 0 s mm10.chr11 99565435 24 + 122082543 AAGAATAGTTGGGGCTCTTCTGTA i mm10.chr11 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39394783 207 - 61074082 I e nomLeu3.chr19 48033192 987 - 81552678 I a score=498815.000000 s hg38.chr17_JH159146v1_alt 157340 245 + 278131 AACCAATGTAAGCCCCATTTGAGGAATCAATGAATACTCGATAAATGCTAACATTAATTAAAAATGGATTGTTTTGGAAGACAGCATATATGAAGAAATGGATATATACACTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTGTGAGGACTAGGATAAT-C-AAATTATTTATACACACCAGCACAGTGA--TCAATTCATTTAGTCAATTAAGGAAGAAAGAAAAATCAATGTC s panTro4.chr17 66276342 245 - 82630442 AACCAATGTAAGCCCCATTTGAGGAATCAATGAATACTCGATAAATGCTAACATTAATTAAAAATGGATTGTTTTGGAAGACAGCATATATGAAGAAATGGATATATACACTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTGTGAGGACTAGGATAAT-C-AAATTATTTATACACACCAGCACAGTGA--TCAATTCATTTAGTCAATTAAGGAAGAAAGAAAAATCAATGTC i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53138056 242 + 80904711 AACCAATGTAAGCCCCATTTGAGGGTGCAATGAATACTCAATAAATGCTGATATTAATTCAAAATGGATTTTTTGGGAAGGCAGCATATAGGAAGAAATGGATGTATATGCTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTGT---GACTAGGATGAT-C-AAATTATTTATACACACCAGCACAGTCA--TCAATTCATTTAGTCAATTAAGGAAGAAAGAAAAATCAATGTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52703525 242 + 80997621 AACCAATGTAAGCCCCATTTGAGGGCACAATGAATACTCAATAAATGCTGATATTAATTCAAAATGGATTTTTTTGGAAGGCAGCATATAGGAAGAAATGGGTGTATATGCTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTGT---GACTAGGATGAT-C-AAATTATTTATACACACCAGCACAGTGA--TCAATTCATTTAGTCAATTAAGGAAGAAAGAAAAATCAAAGTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47705997 242 + 74645514 AACCAATGTAAGCCCCATTTGAGGGCGCAAtgaatactcaataaatgctgatattaattcaaaatggatttttttgGAAGGCAGCATATAGGAAGAAATGGATGTATATGCTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTTT---GACTAGGATGAT-C-AAATTATTTATACACACCAGCACAGTGA--TCAATTCATTTAGTcaattaaggaagaaagaaaaatcaatgtc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9972918 242 - 75148670 AACCAATGTAAGCCCCATTTGAGGGCGCAATGAATACTCAATAAATGCTGATATTGATTCAAAATGGATTTTTTTGGAAGGCAGCATATAGGAAGAAATGGATATATATGCTTCTCAAAA----------TTGC-TTTGCATTTTGAGCTCAGAATTTCA--G----ATGACTGT---GACTAGGATGAT-C-AAATTATTTATACACACCAGCACAGTGA--TCAATTCATTTAGTCAATTAAGGAAAAAAGAAAAATCAATGTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112845340 239 + 159171411 AACCAATGTAAGCCCCATTTGAGGGTGCAATGAATACTCAATAAATGCTAATATTAAGTCAAAATGGATT-TTGGGGAAGACAGCATATATGAAGAAATGTATATATATACTTTTCAAAA----------CTGC-TTTGCATTTTTAGCTCAGAATTTGA--G----ATGACTGT---GACTAAGATAAT---AAATTATTTATATGCACCAGCACAGTGA--TAAATTTGTGT-GTCAATTAAGGAAGAAAGAAAAATCAATGTC i calJac3.chr5 C 0 C 0 s mm10.chr11 99565459 241 + 122082543 AACTCACAGAGCCCTCCCTGGAGGGAGCAAACAA----CAAATAATGCTGATATTTACATAAAACCAATTATTCAGCAAGACAGCATCCATCCAAACCTCTTCTCTAGGACCCTTCAAGGATGGGAATTCTTGC-TTGTCTCTTTTTGCAATAAATACCA--GAGCAATGAGTGT------TTGGCTGATGT-AAATTA-----------CAGCCAAGGGAGTTCAAATCATAAGACACCATGGGAAAGAAAAGAAAAGAAAAAAC i mm10.chr11 C 0 I 2 s canFam3.chr9 39394990 243 - 61074082 AAGTAAAACAAGCCTCATTTGAGGGTGCAAGGAATAGCCAATAAATATGAATATTTTTTCGGAATTGACTTTTCT---AGACAGCATATATCAAGTAATGGGTATATGTTCTTCCCCAAA----------TTACGTTTGCATTTTGAGCTTGGAATTTCACCA----ATGATTAT---AACTAAAGCAAT-CAAAATTGTTTCTACATGACAGCAAAGTGA--TCAATTTGTTTAGCCAGGTAAGGAAGAAAGAAAAATCAATTTC i canFam3.chr9 I 207 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e nomLeu3.chr19 48033192 987 - 81552678 I a score=852728.000000 s hg38.chr17_JH159146v1_alt 157585 316 + 278131 AGAATCAATGGAAACTA----AAATCAAGTATTTTTA-------AAACATTctgttaa---tctctagactctagcatagtgctt-gcacagtggatgtcttccaataatatctattaaataa-atATCTGTTAAATAAAAAGCTTCTATAAAATGAACTACCACATTTTTTACTTTTTAACTTATCACAAATAACCAGTATCTATTTTTTCGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTGGGG-TAAATCTTGGATAGTGTGATAACCTACTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAGACATGAAAATAAATA s panTro4.chr17 66276587 315 - 82630442 AGAATCAATGGAAACTA----AAATCAAGTATTTTTA-------AAACATTctgttaa---tctctagactctagcatagtgctt-gcacagtggatgtcttccaataatatctattaaataa-atATCTGTTAAATAAAAA-CTTCTATAAAATGAACTACCACATTTTTTACTTTTTAACCTATCACAAATAACCAGTATCTATTTTTTCGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTGGGG-TAAATCTTGGATAGTGTGATAACCTACTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAAACATGAAAATAAATT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48034179 316 - 81552678 AGAATCAATGGAACCTA----AAATCAAGTATTTTTA-------AAACATTctgttaa---tctctagactctagcatagtgctt-gcacagtggatgtcttccaataatatctattaaatga-aGATCTGTTAAATAAAAAGATTCTATAAAACGAACTACCACATTTTTTACTTTTTAACCTATCACAAATAACCAGTATTTATTTTTTCGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTGGGG-TAAATCTTGGATAGTGTGATAACCTGCCGTCCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAAACATGAAAATAAATC i nomLeu3.chr19 I 987 C 0 s rheMac3.chr16 53138298 313 + 80904711 AGAATCAATGGAAACTA----AAATCCAGTATTTTAA-------AAACATTCTATTAA---CCTCTAGACTCTAGCGTAGTGCTT-GCACAGTGGATGTCTTCCaataatatctattaaataa-atatatgttaaataaaaaGATTCTAT-AAATGAACTACCACATTTTTTACTTTTTAACCTATCACAAATAACCAGTATCTATTTTTTCGATAAA--------TTCCACTATGAGAG--CTTATTCTGTTGGGG-TAAATCTTGGATAGTGTGTTAACTTGCTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAAACATGAAAATAAATC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52703767 315 + 80997621 AGAATCAATGGAAACTA----AAATCCAGTATTTTAA-------AAACATTCTATTAA---CCTCTAGACTCTAGCGTAGTGCTT-GCACAGTGGATGTCTTCCAATAATATCTATTAAATAA-ATATATGTTAAATAAAAAGATTCTAT-AAATGAACTACCACATTTTTTACTTTTTAACCTATCACAAATAACCAGTATCTATTTTTTTGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTGGGG-TAAGTCTTGGATGGTGTGTTAACTTGTTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGAAAACATGAAAATAAATC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47706239 315 + 74645514 aGAATCAATGGAAACTA----AAatccagtattttaa-------aaacattctattAA---TCTCTAGACTCTAGCATAGTGCTT-GCACAGTGGATGTCTTCCAataatatctattaaataa-atatctgttaaataaaaagaTTCTAT-AAATGAACTaccacattttttactttttaacctgTCACAAATAACCAGTGTCTATTTTTTCGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTGGGG-TAAATCTTGGATAGTGTGTTAACTTGCTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATgggaaacatgaaaataaatc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9973160 315 - 75148670 AGAATCAATGGAAACTA----AAATCCAGTATTTTTA-------AAACATTCTATTAA---TCTCTAGACTCTAGCGTAGTGCTT-GCACAGTGGATGTCTTCTAATAATATCTATTAAATAA-ATATCTGTTAAATAAAAAGATTCTAT-AAATGAACTACCACATTTTTTACTTTTTAACCTATCACAAATAACCAGTATCTATTTTTTCGATAAA--------TTCCACTATGAGAGCTCTTATTCTGTTAGGG-TAAATCTTGGATAGTGTGTTAACTTGCTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAAACATGAAAATAAATC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112845579 315 + 159171411 AGAATCAATGGAAACTA----AAATCAAGTATTTTAA-------AAACAATCTATTAA---TCTCTAGACTCTAGCAGAGTGCTTGGCATGGCAGACATCTTCCAGCAACATCTATTAAATAA-ATATCTGTTAAATAAAAAGATCCCATAAAATGAGCTACCACATCTTTTAC-TTTTAACCTATCACAAAGAACC-GTATCTATTTTTTCAATAAA--------TTCCACTGCGAGAGCTTTTATGCTGTTGGGG-TAAATCTTGAATAGTGTGATAACCTGCTGTTCAGGTTTAGGTAGGCATTCCACTTTCCCTAATGGGAAATATGAAAATAAATA i calJac3.chr5 C 0 I 715 s mm10.chr11 99565702 308 + 122082543 AAAATGAAAGCAATTTC----ATGTCAGGTGTCTTGATCTCCAGTATTATTGACTTAAATGCCTTTGGTCTCT-----GATTCCT-CTATGTTTCATGCTAT---GTAATTTCTATTTATTTACACATTT----------AAGCTTTTCC-AGGCAAGCT-----AGTTCTAAATGCTAAAGCTTTTACACAT--CTACTATTTTCCCACTCCAAAGAGGGAACTGTTCGCACATAAGACTTCTCACTGTGCTGGGA-TGGACATTGGGTTGTATAAGAACCTGCTGT-CAACCAGAGCTAGGCATTCCCCTTTCCCTAAGAGGAAACACAGACATAAACA i mm10.chr11 I 2 C 0 s canFam3.chr9 39395233 303 - 61074082 AGGGACAATGGAAATTAAATTAAGTAAAACATTTAAA-------AAACATTATATTAA---tctccaggttccagcaaagggcttggcatagtagttgtcttcaaaaaatacctattgagtaa-a---------------AAGATTCTACAAAATGGCATAGTGAATTTTTTAGTTTTCAACCCATCACAAAGAGCTAGTATGTAATTTTTCAGTGA---------TTCCACCACAAATGTGCTCCTTCTGCTGGGGATAAATCTTAGATA---TGATGACCTGCTATTCAGGTTTAGATAGGCATTCCACTTTCGCCAAGAAGAAACATGAGAACAAATC i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M a score=5185151.000000 s hg38.chr17_JH159146v1_alt 157901 1621 + 278131 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAATGGTCAAAATGGTTATTTCTCAAAGAGTGATGAAAT-AGCCTAAAAGACAGAAGGGAGGTCTCCAATGGTACCCAAATGTGCAAATAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGAGTGCTGAAGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTGGTTAACAGCGGGGCTCACAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGTCCGGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGGCAGACTCCACAGCGGCAGCTTTTATCAAATGAGCAGAAGGTGGTGGCAGGGCCGGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATACATGGCAATGGGAGGTGGGTTTTTGTTGAGTTGAG---AGAAGTCTGTTGGTGTCTCGATGCTCCTCTCTTCTGCTCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTCCCCCATGTTTCAGTTTATAGTTATTTCCATAAAAAATGCCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTATTCACATTGCCAGTGTGTCACTACACAGAAATCT---TCATTCCAGTCTTCAAAGGTACCGGGCCATTATCTTCTAATCATTATACCCTCACTAATAATGGCTCGGTATGCCAGGCATCTGCAAACGTTTCCCAC-TTCTTTTGTTTACTTTTCAGATGAAGAGGACAAGTAAGCTTTTTGT-TTGCTGTTCTACCAGTGACTACAG-GTTCTATGTGATCCTTTAGGCCCTCAGGCTGAAAAAGTGATATAACATTttagatttattatttg-----------------tggctccaataaactgaatgaagatgaatggatagaatctatagagaaatagattttggttttgtgtaaagaggcactttcaaacagagctatAACAAATCGTTTGTTCTGCATTCCTTTCAAATATGCTCTGAACAATAACTTGGTAAGAACATGCAGGTGGGAATGA--------AGACCTTCATGGGTGACAAAGATGGGTGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGGAGATTATTTATAA-CCAAAAGGCTGGTTGTATTGGGCCATTCAGAAGCTAAATGATGcagtatttaccagactgagttccatgaacactggttccaagggacttgaaagtgttttctggtaagtaagtttgggaaatgctgaattcttcattgttgggcctctcggagcctttaatgtgctaaaatgctctatgacttttcaata------------cagagatatagcatatatttttctccaaacttacttgaccatg-gactgctttttgtttgtt----ttcagagattagctctataggtcagtgctttatgaaacatac s panTro4.chr17 66276902 1624 - 82630442 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAATAGTCAAAATGGTTATTTCTCAAAGAGTGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCCAAAGGTGCAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGAGTGCTGAAGCCCAGATGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTGGTTAACAGCAGGGCTCACAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGTCCGGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGGCAGACTCCACAGCGGCAGCTTTTATCAAATGAGCAGAAGGTGGTGGCAGGGCCAGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATGACAATGGGAGGTGGGTTTTTGTTGAGTTGAGAGAAGAAGTCTGTTGGTGTCTCGATGCTCCTCTCTTCTGCCCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTCCCCCATGTTTCAGTTTATAGTTATTTCCATAAAAACTGCCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTATTCACATTGCCAGTGTGTCACTACACAGAAATCT---TCATTCCAGTCTTCAAAGGTACCGGGCCATTATCTTCTAATCATTATACCCTCACTAATAATGGCTCGGTATGCCAGGCATCTGCAAACCTTTCCCAC-TTCTTTTGTTTACTTTTCAGATGAAGAGGACAAGTAAGCTTTTTGT-TTGCTGTTCTACCAGTGACCAAAG-GTTCTATGTGATCCTTTAGGCCCTCAGGCTGAAAAAGTGATATAACATTttagatttattatttg-----------------tggctccaataaactgaatgaagatgaatggatagaatctatagagaaatagattttggttttgtgtaaagaggcactttctaacagagctatAACAAATTGTTTGTTCTGCATTCCTTTCAAATATGCTCTGAACGATAATTTGGTAAGAACATGCAGGTGGGAATGA--------AGACCTGCATGGGTGACAAAGATGGGCGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGGAGATTATTTATAA-CCAAAAGGCTGGTTGTATTGGGCCATTCAGAAGCTAAATGGTGcagtatttaccagactgagttccatgaacactggttccaagggacttgaaagtgttttctggtaagtaagtttgggaaatgctgagttcttcattgttgggcctctcggagcctttaatgtgctaaaatgctctatgacttttcaata------------cagagatatagcatatatttttctccaaacttacttgaccatg-gactgctttttGTTTGTT----TTCAGAGATTAGCTCTATAGGTCAGCGCTTTATGAAACATAC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48034495 1614 - 81552678 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAATAGTCAAAACGGTTATTTCTCAAAGAGTGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCCAAAGGAGCAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCCTAGCCTTGATGTAGGCAGTAGTGAGTGCTGAAGCCCAGATGGTGTGGAGGACACTGGGCAGCCACCTCACGGAACCTGTGCAGACTCGGCTTGTTAACAGCAGGGCTCACAGGGACTCTCACAGCCAGGCTGAACATAAGTAGTCAGGTTGATCCCACTCAGTCCAGGAATCTGGTAACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGGCAGACTCCGCAGCGGCAGCTTTTGTCAAAGGAGCAGAAGGTGGTGGCAGGGCCGGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATGGCAATGGGAGGTGGGTTTCTGTTGAGTTGAGAGAAGAAGTCTGTTGGTGTCTCGATGCTCCTCTCTTCTGCCCTGGCTCTTATATACCCATCTCCCTGGGTGTCAGCCTATTACCGACGGTTTTTTCCCCATGTTTCAGTTTATAGCTATCTCCATAAAAACCGTCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTTAAATTAGGACTCTTCACATTGCCAGTGTGTCACTACACAGAAAGCT---TCATTCCAGTCTTCAAAGGTACCAGGCCATTATCTTCTAATCATTATACCCTCACTAATAATGGCTTGGTATGCCAGGCATCTGCAAACCTTTCCCAC-TTCTTTTGTTTAGTTTTCAGATGAAGAGGACAAGTAAGCTTTTTGT-TTGCTGTTCTACCAGTGACCAAAG-GTTCTATGTGATCCTTTAGGCCCTCGGGCTGAAAAAGTGATAGAACATTttagatttattatttg-----------------tagctccaataaactgaatgaagattaatggttagaacctatagagaaatagattttggttttgtgtaaagaggcattttctaacagagctgtAACAAATCATTTGTTCTGCATTCTTTTCAAATATGCTCTGAACAATAACTTGGTAAGAACATGCAGATGGGAATGA--------AGACCTGCATGGGTGACAAAGATGGGCATCCTTT-AAGCTCCATCCAACTGTGTTATAAATGGAGATTATTTATAA-CCAAAAAGCTAGTTGTATTGGGCCATTCAGAAGGTAAATGGTGcagtatttcccagactgagttccatgaacactggttccaagggacttgaaa----------caaagtaaatttgggaaatgctgagttcttcattgttgggtctctcagagcctttaatgtgctaaaatgctctatgacttttcaata------------cagagatatagcgtatatttgtctccaaacttacttgatcatg-gactgctttttGTTTGTT----TTCAGAGATTAGCTTTATAGGTCAGTGCTTTATGAAACATAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53138611 1616 + 80904711 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAAGAGTCAAAATGGTTATTTCTC-AAGAGTGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCGAAAGGAGCAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCAGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGAGTGCCGAAGCCCGGGTGATGCAGAGGACATTGGGCAGCCACCTCACGGAACGTGTGCAGACTTGGCTGGTTAACAGCGGGGCTCACAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGGCCAGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGACAGACTCCACAGCGGCAGCTTTTATCAAAGGAGCAGAAGGTGGTGGCAGGGCCAGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATAGCAATGGGAGGCGGGTTTTTGTTGAGTCGAG---AGAAGTCCTTTGGTGTCTGGATGCTCCTCTCTTCTACCCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTTCCCCATGTTTCACTTTATAGCTATCTCCATAAAAACCGTCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTCTTCACATTGCCAGTGTGTCACTGCACAGAAAGCT---TCATTCCAGTCTTCAAAGGTACCGGGCCATTATCTTCTAATCGTTATACCCTCACTAATAATGGCTTGGTATGCCAGGCATCTGCAGACCTTTCCCAC-TTCTTTTGTTTACTTTTCAGATGAAGAGGACAAGTAAGCTTTTTGT-TTGTTCTTCTACCAGTGACCAAAG-GTTCTTTGTGATCCTTTAGGGCCTCTGGCTGAAAAAGTGATATCACATTttagatttattatttg-----------------tgactccaagaaa-tgaatgaagatgaatggatagaatctgtagagaaatagattttggttttgtgtaaagaggcacttttt-acagagctgtAACAAATCATTTGTTCTCCATTCCTTTCAAATATGCTGCGAACGATAACTTGGTAAGAACCTGCAGCTGGGAATGA--------AGACCTGCATGGGTGACAAAGATGGGTGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGAAGATTATTTATGA-CCAAAAATCTAGTTGTATTGGGCCATTCAGAAGCTAAATGGTGcagtatttcccagactgagttccgtgaacaccggttccaagggacttgaaagggttctctggtaaataagtttgggaaaggctgagttcttcactgttgggcctctcggagcctttaatgtgc--aggtgctctacgacttttcaata------------caaagatagagcatatatttttctccaaacttacttgaccgtg-gactgctttttgtttgtt----ttcagagattagccttataggtcagtgctttatggaacatac i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52704082 1653 + 80997621 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAAGAGTCAAAATGGTTATTTCTC-AAGAGTGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCGAAAGGAGTAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGAGTGCCGAAGCCCGGGTGATGCAGAGGACATTGGGCAGCCACCTCACGGAACGTGTGCAGACTTAGCTGGTTAACAGCGGGGCTCGCAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGGCCAGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGACAGACTCCACAGCGGCAGCTTTTATCAAAGGAGCAGAAGGTGGTGGCAGGGCCAGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATAGCAATGGGAGGCGGGTTTTTGTTGAGTCGAG---AGAAGTCCTTTGGTGTCTCGATGCTCCTCTCTTCTACCCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTTCCCCATGTTTCACTTTATAGCTATCTCCATAAAAACCGTCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTCTTCACATTGCCAGTGTGTCACTGCACAGAAAGCT---TCATTTCAGTCTTCAAAGGTACCGGGCCATTATCTTCTAATCGTTATACCCTCACTAATAATGGCTTGGTATGCCAGGCATCTGCAAACCTTTCCCAC-TTCTTTTGTTTACTTTTCAGATGAAGAGGACAAGTAAGCTTTTTGT-TTGTTCTTCTACCAGTGACCAAAG-GTTCTATGTGATCCTTTAGGCCCTCTGGCTGAAAAAGTGATATCACATTTTAGATTTATTATTTGTGACTCCAAGAAAtgaatgactccaagaaa-tgaatgaagatgaatggatagaatctatagagaaatagattttggttttgtgtaaagaggcacttttt-acagagctgtAACAAATCATTTGTTCTCCATTCCTTTCAAATATGCTGCGAACGATAACTTGGTAAGAACCTGCAGCTGGGAATGAAGACCTGCAGACCTGCATGGGTGACAAAGATGGGTGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGAAGATTATTTATGA-CCAAAAATCTAGTTGTATTGGGCCATTCAGAAGCTAAATGATGcagtatttcccagactgagttccatgaacaccggttccaagggactcgaaagggttctctggtaaataagtttgggaaaggctgagttcttcactgttgggcctctcggagcctttaatgtgc--aggtgctctacgacttttcaatacaaagatagagccaaagatagagcatatatttttctccaaacttacttgaccgtg-gactgctttttgtttgtt----ttcagagattagctttaaaggtcagtgctttatggaacatac i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47706554 1618 + 74645514 atCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAATAGTCAAAATGGTTATTTCTC-AAGAGTGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCGAAAGGAGCAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTGATGTAGGCAGTAGTGAGTGCTGAAGCCTGGGTGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACGTGTGCAGACTTGGCTGGTTAACAGCGGGGCTCGCAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGGCCGGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGACAGACTCCACAGCGGCAGCTTTTATCAAAGGAGCAGAAGGTGGTGGCAGGGCCAGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATAGCAATGGGAGGTGGGTTTTTGTTGAGTCGAG---AGAAGTCCTTTGGTGTCTCGATGCTCCTCTCTTCTACCCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTTCCCCATGTTTCACTTTATAGCTATCTCCATAAAAACCGTCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTCTTCACATTGCCAGTGTGTCACtacacagaaagct---tcattccagtcTTCAAAGGTACCGGGCCATTATCTTCTAATCATTATACCCTCACTAATAATGGCTTGGTATGCCAGGCATCTGCAAACCTTTCCCAc-ttcttttgtttacttttcagaTGAAGAGGACAAgtaagctttttgt-ttgttgttctaCTAGTGACCAAAG-GTTCTATGTGATCCTTTAGGCCCTCTGGCTGAAAAAGTGATATCACATTTTAGATTTATTATTTG-----------------TGGCTCCAAGAAA-TGAATGAAGATGAATGGATAGAATCTATAGAGAAATAGATTTTGGTTTTGTGTAAAGAGGCACATTTT-ACAGAGCTGTAACAAATCATTTGTTCTCCATTTCTTTCAAATATGCTGTGAACGATAACTTGGTAAGAACCTGCAGGTGGGAATGA--------AGACCTGCATGGGTGACAAAGATGGGTGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGAAGATTATTTATGA-CCAAAAATCTAGTTGTATTGGGCCATTCAGAAGCTAAATGGTGCAGTATTTCCCAGACTGAGTTCCGTGAACACCGGTTCCAAGGGACTTGAAAGGGTTCTCTGGTAAGTAAGTTTGGGAAAGGCTGAGTTCTTCATCGTTGGGCCTCTCGGAGCCTTTAATGTGCTAAGGTGCTCTACGACTTTTCAATA------------CAAAGATAGAGCATATGTTTTTCTCCAAACTTACTTGACCGTg-gactgctttttgtttgtt----ttcagagatTAGCTTTATAGGTCAGTGCTTTATGGAACATAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9973475 1618 - 75148670 ATCACAAGGTCATATTTGCTAAGCCAGAATAAAGTTTATTAACAAATAGTCAAAATGGTTATTTCTC-AAGAGTGATGAAAT-AGCCTAAAAGACAGATAGGGGGTCTCCAACTGTACCGAAAGGAGCAAAGAA----TTAAGA--------AGATTCATCAAGACTTGGCCCCGGGGATTGGGATGGCCTTAGCCTTCATGTAGGCGGTAGTGAGTGCTGAAGCCCGGGTGGTGCAGAGGACATTGGGCAGCCACCTCACGGAACGTGTGCAGACTTGGCTGGTTAACAGCGGGGCTCGCAGGGACTCTCACAGCCAGGCTGAACATAGGTGGTCAGGTTGATCCCACTCAGGCCGGGAGTCGGGTGACAGTTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCTTGCAGCAGGGTGGGGGGCAGGTGTCACAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGTAGACAGACTCCACAGCGGCAGCTTTTATCAAAGGAGCAGAAGGTGGTGGCAGGGCCAGTGGGGACGCTGCAGGAGCGGAGAGCACAGCAATCCATAGCAATGGGAGGTGGGTTTTTGTTGAGTCGAG---AGAAGTCCTTTGGTGTCTCGATGCTCCTCTCTTCTACCCTGGCTCTTATATACCCATCTCCCTGGGCGTCAGCCTATTACTGAGGGTTTTTTCCCCATGTTTCACTTTATAGCTATCTCCATAAAAACTGTCTAATTACTTAAGTGTTTATTACCTAAGATACACTGCTCACCTCATAAAAGAGTTTTAGGTTGTTTTGTTGTCAAATTACGACTCTTCACATTGCCAGTGTGTCACTACACAGAAAGCT---TCATTCCAGTCTTCAAAGGTACCGGGCCATTATCTTCTAATCGTTATACCCTCACTAATAATGGCTTGGTATGCCAGGCATCTGCAAACCTTCCCCAC-TTCTTTTGTTTACTTTTCAGATGAAGAGGACAAGTAAGTTTTTTGT-TTGTTGTTCTACCAGTGACCAAAG-ATTCTATGTGATCCTTTAGGCCCTCTGGGTGAAAAAGTGATATCACATTttagatttattatttg-----------------tggctccaagaaa-tgaatgaagatgaatggatagaatctatagagaaatagattttggttttgtgtaaagaggcacttttt-acagagctgCAACAAATCGTTTGTTCTCCATTCCTTTCAAATATGCTGCGAACGATAACTTGGTAAGAACCTGCAGGTGGGAATGA--------AGACCTGCATGGGTGACAAAGATGGGTGTCCTTT-AAGCTCCATCCAACTGTGTTATAAATGAAGATTATTTATGA-CCAAAAATCTAGTTGTATTGGGCCATTCAGAAGCTAAATGGTGcagtatttcccagactgagttccgtgaacaccagttccaagggacttgaaagggttctctggtaaataagtttgggaaaggttgagttcttcattgttgggcctctcggagcctttaatgtgctaaggtgctctacgacttttcaata------------caaagatagagcatatatttttctccaaacttacttgaccgtg-gactgctttttgtttgtt----ttcagagattagctttataggtcagtgctttatggaacatac i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112846609 1616 + 159171411 ATCACAAGGTCATATCTGCTAAGTTAGAATAAAATTTATTAACAAATAGTCAAATCGGTTATTTCTCAAAGAGGGATGAAAT-AGCCTAAAAGACAGAAAGGAGGTCTCCAACTGTACCCAGAGAAGCTAAGAA----TGAAGA--------AGATTCATCGAGACTTGGCCCCAGGAATTGGGAGGGCCTTAGCCTTGATGTAGGCAGTGGTGAGAGTTGAAGCTCAGATGATGCGGAGGACACTGGACAGCCGCCTCACAGAACCTGTGCAGACTCGGCTGGTTAACAGCAGGGCTCACAGGGACTCTCACAGCCAGGCTGAACGTAGGTTGTCAGGTTGATCCCACTCAGTCCGGGAGTCGGGTGACAGCTGTTGAGCAGCCAGCAAGTTGGCACATAGGTATCAGGCGTGCAGCAGGGTGGGGGGCAGGTGTCGCAGCAGATGGGCTGAAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGCAGGCAGACTCCGCAGCGGCAGCTTTTATCAAAGGAGCAGAAGGTGGTGGCAGGGCCGGTGGGGACGCTGCAGGAGCGAAGAGCACAGCAATACATGGCGATGGGAGGTGGGTTTTTGTTGAGTTGAGAGGAGAAGTCTGTTGGTGTCTTGATGCTCCTCTCTTCTGCCCTGGCTCTTATATACCCGTCTTCCTGGGCGTCAGCCTATTACCGACGGATTTTTCCTCATGTTTCAGTTTATAGCTATCTCCATAAAAACCGTCTAATTACTTAAGTGTTTATGACCTAAGATACACGGCTCACCTCGTAAAAGAGATTTAGGTTGTTTTGTTGTCAAATTAGGACTCTTCACATTGCCCGTGTGTCACTGCACAGAAAGCT---TCATTCCAGTCTTCAAAGGCACCGGGCCATTATCTTCTAATCACTACACGCTTCCCAATAATGGCTCGGTATGCCAGGCATCTGCAAACCTTTCCCAC-TTGTGTTGGTAACTTTTCAGATGAAGAGGACAAGAAAGCTTTTTGT-TCGCTGTTCTGCCAGTGACCAAAG-GTTCTATGTGTTCCTTTAGGCCCTCTGGCtgaaaaagggaca--acattttagatttattgtttg-----------------cggctccaagaaactgaatgaagatgaatggatggaatctacagagaaataga------ttttgtgtaaagaggcacttcctagcagagccgtAACAAGCCATTTGTTCTTCATTCCCTTCAAACATGCTCCAAATGATAACTTGGTAAGAACAAGCAGATGGGAGTCA--------AGACCTGCATGAGTGGCAAAGATGAGTGTCCTTT-CAGCTCCGTCCAACTGTGTTACAAATGAAGGTTGTTTATGA-CCAAAAAGCTAGTTGTACTGGGACATTCCGAAGCTCAATGGTGcagtatttcccagattgagttccatgaacacgggttccaagggacttgaaagggttttctggtaaataagtttgggaactactgagttcttcatggttgggcctgtcagagcctttaatgtgctaaagcgctctgtgacttttcagta------------tatacctatagcatatatttttctccaaacgtacttgaccatg-ggctgcactttgtttgtt----ttcatagattagctttacaggtcagtgctttatggaacatac i calJac3.chr5 I 715 C 0 s mm10.chr11 99566010 1621 + 122082543 GCTACGAGGCCATGGATGCTAAGCCAGAATGAAGTTTATTAATAAGTAGTCCAAATGGTTATCTCTCAAAAAAAGCAGGAATGAGCTTAAAAGAGAGACATCA----TTCATCTGTTCCCAAAGGAATAAAGCA----TTAAGAATTTAAACATGTCCATGGGCCCCTGTTTCTGGGCATTGGGGTTGATTGAGCTTTGATGCAAGCAGAAGCAGTTATTGAAGGGCAGGTGAAAGAGAGGATGCTGAGCAGACAGGCCACTGAACCTGGGAAGACTTGACTGCTTAACAGCAGGGCTCACAGGGACTCTCACAGCCGGGCTGCACGTAGGTGGTCAGGTTGATGCCACTCAGGCCGGGAGTTGGGTGGCAAGAGTTGAGCAGCCAGCAGGTTGGCACGTACACTTCAGGCTGGCAGCAGGGTGGGGGGCAGGGGTCACAGCAAGTGGGCTGCAGGAGGCTGATCTCATGTGGGCAGGTGCTGGGCAGGCAGACTCCACAGCGGCAGGACTTGTCTGAGGAGCAGATGGTGGTGGCAGGGCCGGTGGGGACACTGCAGCAGCGGGCGACACAGCAAGCCATGGCTTTGGGAGTTGGGTTGTGGTAAGGTTGAGAGGAGAAGTCAGTTGATGTCTGAATGCT-CTGTCGTCTGCCCTGGCTTTTATATACCCGCCTCCCTGGGCGTCAACCTATGGTCAA-GATATTTTCCCCATGTTTCAGTTTATGGCTGCTTCCATAAAATCCTTCTAATTACTTAAGTGTTTATTACCTAAGACACATTCTTTACCTCATAAAAGGGATTCAGGTTGTTTTGTCGTCAAGTAAGGACTCTTCACATTGGTCAGTTGTCATTGCACAGAGAGCTTCATCATTTTGGTCTTCAAAGGCTCTGAGCCATTATCTTCTAATCATTCCACA-TCACTAATAGTGGCTTGGAATGGCAGGTATC-GCAGCTCTTCCCTGT-GCTCCGTGTCTACTTTACAGACAAAGACTCCA--TAGGCATTTTGCATTTCTCTTCTTCCAGCAACCATGGTTTTCTATGAGATAATATAGACTCTCTGACT-AAAAAGTGAGAAAAAAAATTAGATTTATGTCTGG-----------------TAGTGCCAAGGCGTTGACTTGAA---AAGGAGTAGAAT---TAGAGAGAGCAGGTTGGGCAATGGGCAAAGAAGTACTTTTCTATAGAATTCTAGAAAAATCTCTCATTTTCTTTCCCTTTGTACATGGTTTGAATGATGACTCTGGAGGGGCACGTGGATGGCCATCA--------AGAGCTCTATGGGTGACAAGGTCCAGTGCCCTTA-GAACTTCGTCTGATTGCACCATGCACTTAGATTATTTATCA-CTCAAAGATGAGTTGTGTTAGG--ACTTAAGAATGAAAGGGTAGAGTGTTT-CTAAACTGAGGTTCTCGAACCGCTGCTCTAGGAGACACAAAATGAGACTCTCG-AGGTAACATGGGGGAATactgacttcccgactggagggtttctcagagcctccaacatgctaagagtctctggatgttttcatta------------aggtgatataacgtatatctccct-caaacctccttgaccaTACCACTACGTTTAGTTTGTTTATCTTCATAGATTTGCTTGATAGGTCAGTCTTTTCTGGAGCATGC i mm10.chr11 C 0 C 0 s canFam3.chr9 39395536 1598 - 61074082 ATCACAAGGCCAAATTTGCTAAGCCAGAATAAAGTTTATTAAGGAATAGTCAAAATGGTTATATCTCAAAGAGCAGTAAAAT-GGCCTAAAAGACAGAAAGAAGGTCTCCAACTCCACTCAAAAGAGGAGAGGAGAAGTTGGGT--------GAATTCATGAAAACATGGCCCAGGGGCTTGGGATTGATTGAGCC-TGAGACAGGTAGTAGTGGGTGTTGAAGGCCAGATGG------------TGAGCAG-CATCCCAC---ACCTGTGCA----TGGCTGCTT---AGCAGGGCTCACAGGGATTCTGACAGCCAGACTGAACATAGGTGGTCAGGTTGATCCCACTCAGTCCAGGAGTTGGGTGGGAAGAATTGAGCAGCCAGCAAGTTGGCACATAGGTGTCAGGCTCACAGCAGGGTGGAGGGCAGGTGTCGCAGCAGGTGGGCTGAAGGAGGCTGATGTCATGGGGGCAGGTGCTGGGCAGGCAGACTCCGCACCGACAGCATTTGTCAGAGGAACAGATGGTGGTGGCAGGGCCGGTGGGGACGCTGCAGCAGCAGGGAACACAGAAAGCCATGATGTCAGGAGTTGGGTTTTCGTTGGGTTGAGAAGAGGAGTCTGTTGGTGTCTCAATGCTTCTCTCTTCTGCCCTGGCTCTTATATACCCACCTCCCTGGGTGTCAGCCTATTACCAAGACTTTTTTCCTTGTGTTTCAGTTTATAGCTATCTCCATTAAAACCAGCTAATTACTTAAGTGTTTATTACCTGGGACACACTCTTTACCTCATAAAAGGGGTTTAGGTTGTTTTGTTGTCAAATTAGGACTCTTCATGTTGGCTCTTTGTCACCTCA-AGGACATT---TCATTTCAGTCTTCAAAGGCACCGAGTCATTATTCTCTAATCATTATACA-TCGTTAGTGATGGCCTGGTATGCCAGGTATCTGCAAATCATCTCCACATTTCTTTGCCTGCTTTTCAGATGAAGA-GATAAGTAGGCTTTTTGA-TTGCTATTCTAACAGCAACCAAAG-ATTCTATGTGATAATTTAGGTCTTCTGGCTGAAAAAGTGCTA-AAAGTCttagatttatttttca-----------------tggccctaagaagctgaattaagatgaatggatgggatctatagagaaggagattctgatccagtgtaaagaaacactttct----TAGATGTAA-AAATCATTTACTTTCCGTTCCCTCCATGCATACAGTAAACAATAACTTGTCAGGGACAGGTAGATGGGAGTCA--------GGAATTGTAC-AGTGACAGTGGCAGATGCCATTCAAAACTCAGACCAACGATGTTATAGATTAAGATTGTTGATGACCCCAGAAAACAGTTTTGTGGGGCCATTTAGAGACTAAACTCTGCAATATTTCCTAAAATGAGTTCCATGAACACCTGTTTGATGGAACATTAAAAGGTTATCTGGTAAATACATTTGAGaaata--gagttcttcattggtggacctttcagagcctttaatatgctaaaatgctctctgactttccaatt------------aagagatataacaggtatttttctccaaaattacttggccatg-gaat-cattttGTTTGTTAGTTTCCATAGGTTAGCTTCATAGATTAGTGTTCTATAGAGCACAG i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M a score=36016.000000 s hg38.chr17_JH159146v1_alt 159522 11 + 278131 ttggggaGATT s panTro4.chr17 66278526 11 - 82630442 TTGGGGAGATT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48036109 11 - 81552678 TTGGGGAGATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53140227 11 + 80904711 ttggggaGATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52705735 11 + 80997621 ttggggagaTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47708172 11 + 74645514 TTGGGGAGATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9975093 11 - 75148670 ttggggaGATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112848225 11 + 159171411 ttggggaGATT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39397134 11 - 61074082 GTGGGGAGATT i canFam3.chr9 C 0 I 214 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99567631 0 + 122082543 C a score=608990.000000 s hg38.chr17_JH159146v1_alt 159533 279 + 278131 TAGCAACATCTTACAGcaagcttgttcaacc------------------tgtggcccagaaaggcattgaatgca----gcacaacacaaattcataaac-tttcttaaaacattatgaga-tttttttgtga----ttttttttctttttttgctcatcagctgtcattagtgttagtgtattttatgtgtggcccaagacaa---ttcttctttcaatgtggcccagggaagccaaaacattgaacacccctgTCTTACTTCCAGGCTCTGTGGTCC---AGAATAGAGACATTTCCGAGTTTCATCTAAA s panTro4.chr17 66278537 281 - 82630442 TAGCAACATCTTACAGcaagcttgttcaacc------------------tgtggcccagaaaggcattgaatgca----gcacaacacaaattcataaac-tttcttaaaacattatgagattttttttgtga---tttttttttctttttttgctcatcagctgtcattagtgttagtgtattttatgtgtggcccaagacaa---ttcttctttcaatgtggcccagggaagccaaaacattgaacacccctgTCTTACTTCCAGGCTCTGTGGTCC---AGAATAGAGACATTTCCGAGTTTCATCTAAA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48036120 284 - 81552678 TAGCAACATCTTACAGcaagcttgttcaacc------------------tgtggcccagaatggcattgaatgca----gcacaacataaattgataaac-tttcttaaaacattatgaga-tatttttgtga--ttttttttttctttttttgctcatcagctgtcattagtgttagtgtattttatgtgtggcccaagacaattcttcttctttcaatgtggcccagggaagccaaaacattgaacaaccctgTCTTACTTCCAGGCTCTGTGGTCC---AGAATAGAGACATTTCCAAGTTTCATCTAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53140238 299 + 80904711 TAGCAACAGCTTACAGcaagcttgtccaacctgcgg--cataggtcacatgtggcccagaatggccttgaatgta----gcacagcacaaatttgtaaac-tttcttaaaacattatgaga--tgttttgtgg--tttttttttcttttttttgctcatcagctgtcattagtgttagtgttttttacgtgtggcccaagacaattcttcttctttcaaagtggtccagggaagccaaaacatcgaacacccccgTCTTATTTCCAGGCTCTGTGGTTC---AGAATAGAGACATTTCCAAGTTTCATCTAAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52705746 299 + 80997621 TAGCAACAGCTTACAGcaagcttgtccaacctgcgg--cataggtcacatgtggcccagaatggccttgaatgta----gcacagcacaaatttgtaaac-tttcttaaaacattatgaga--ttttttgtgt--tttttttttcttttttttgctcatcagctgtcattagtgttagtgttttttacgtgtggcccaagacaattcttcttctttcaaagtggtccagggaagccaaaacatcgaacacccccgTCTTATTTCCAGGCTCTGTGGTCC---AGAATAGAGACATTTCCAAGTTTCATCTAAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47708183 301 + 74645514 TAGCAACAGCTtacagcaagcttgtccaacctgcgg--cATAGGTCACATGTGGCCCAGAATGGCCTTGAATGTA----GCACagcacaaatttgtaaac-tttcttaaaacattatgaga--ttttttgtggtttttttttttcttttttttgctcatcagctgtcattagtgttagtgttTTTTACgtgtggtccaagacaattcttcttctttcaaagtggtccagggaagccaaaacaTCGAACACCCCCGTCTTATTTCCAGGCTCTGTGGTCC---AGAATAGAGACATTTCCAAGTTTCATCTAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9975104 299 - 75148670 TAGCAACAGCTTACAGcaagcttgtccaacctgcgg--cataggtctcatgtggcccagaatggccttgaatgta----gcacagcacaaatttgtaaac-tttcttaaaacattatgaga--ttttttgtga--tttttttttcttttttttgctcatcagctgtcattagtgttagtgttttttacgtgtggcccaagacaattcttcttctttcaaagtggtccagggaagccaaaacatcgaacacccctgTCTTATTTCCGGGCTCTGTGGTCC---AGAATAGAGACATTTCCAGGTTTCATCTAAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112848236 296 + 159171411 TAGCAACATCTTAAAGcaagcttgtccaacctgcagcccatgggccacatgtggcccagaattgtattgaatgcatgaggcacaacacaaatgcgtgaacttttcttaaaacattatgagg-----tttgtgt--------tgttttatttttgctcatcagctatcattagtgttagtgtattttatgtgtggaccaagagaattcttcttctttcaatgtgtcccagggaagccaaaagattgaactctcctgTTTCA----CAGGCTCTGTGGTCCAGGAGAATAGAGACACTTCCAAGTTATGTCTAAA i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e canFam3.chr9 39397145 214 - 61074082 I e mm10.chr11 99567631 0 + 122082543 C a score=749002.000000 s hg38.chr17_JH159146v1_alt 159812 295 + 278131 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATAAAGGTAGAAAATTTAGTATGATGATTTAGAATTACTTTAGAATATGAAAAATACTAAACTGGTAAAACCTTTAGAAATGGCTTACTTAGAAAGGCTTAAAAACATGTACATATTTTCTTGACCCATTTTTTCAGATAAGATGGCTCAAGTTCTA------AAGTAGAAAATTGCACAATGCAGAGGAATCAGAAGCCAAAT-------GAGATGCA---------------------------AATCAACAAGATGT-------------------------------TGGATT------------------------------AAAAAA------ATG-CTTAGCATGAAACTGCTTTCTTTTT s panTro4.chr17 66278818 295 - 82630442 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATAAAGGTAGAAAATTTAGTATGATGATTTAGAATTACTTTAGAATATGAAAAATACTAAACTGGTAAAACCTTTAGAAATGGCTTACTTAGAAAGGCTTAAAAACATGTACATATTTTCTTGACCCATTTTTTCAGATAAGATGGCTCAAGTTCTA------AAGTAGAAAATTGCACAATGCAGAGGAATCAGAAGCCAAAT-------GAGATGCA---------------------------AATCAACAAGATGT-------------------------------TGGGTT------------------------------TAAAAA------ATG-CTTAGCATGAAACTGCTTTCTTTTT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48036404 294 - 81552678 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATAAAGGTAGAAAATTTGATATGACGATTTAGAATTACTTTAGAATATGAAAAATACTAAACTGGTAAAACCTTTAGAAATAGCTTGCTTAGAAAGGCTTAAAAGCATGTACATATTTTCTTGACCCATTTTTTCAGATAAGATAGCTCAAGTTCTA------AAGTAGAAAATTGCACAATGCAGAGGAATCAGAAGACAAAA-------GAGATGCA---------------------------AATCAACAAGATGT-------------------------------TGGATT-------------------------------AAAAA------ATG-CTTAGCGTGAAACTGCTTTCATTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53140537 298 + 80904711 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATGAAGGTAGAAAATTTAGTAT---GATTTGGAATTACTTTAGAATAGGAAAAATATTGAACTGGTAAAACCTTTAGAAATAGCTTACTTAGAAAGGTTTAAAAACATGTATATATTTTCTTGACCCATTTTTTCAGATAAGATGGCTCAAGTTCTA-AAGACAAGTAGAAAATTGTACAATGCAGAGGAATCAAAAGCCAAAT-------GAGATGCA---------------------------AATCAACAAGATGA-------------------------------TGGATT-----------------------------AAAAAAA------ATG-CTTAGCATGAAACAGCTTTCATTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52706045 298 + 80997621 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATGAAGGTAGAAAATTTAGTAT---GATTTAGAATTACTTTAGAATAGGAAAAATATTGAACTGGTAAAACCTTTAGAAATAGCTTACTTAGAAAGGTTTAAAAACATGTATATATTTTCTTGACCCATTTTTTCAGATAAGATGACTCAAGTTCTA-AAGACAAGTAGAAAATTGTACAATGCAGAGGAATCAAAAGCCAAAT-------GAGATGCA---------------------------AATCAACAAGATGA-------------------------------TGGATT-----------------------------AAAAAAA------ATG-CTTAGCATGAAACTGCTTTCATTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47708484 298 + 74645514 CCactaaaactctaaaaataaagttttaaaagtagaTGAAGGTAGAAAATTTAGTAt---gatttaaaattactttagaaTAGGAAAAATATTGAACTGGTAAAACCGTTAGAAATAGCTTACTTAGAAaggtttaaaaacatgtatatattttcttgacCCATTTTTTCAGATAAGATGGCTCAAGTTCTA-AAGACAAGTAGAAAATTGTACAATGCAGAGGAATCAAAAGCCAAAT-------GAGATGCA---------------------------AATCAACAAGatga-------------------------------tggatt-----------------------------aaaaaaa------atg-cttagcaTGAAACTgctttcatttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9975403 298 - 75148670 CCACTAAAACTCTAAAAATAAAGTTTTAAAAGTAGATGAAGGTAGAAAATTTAGTAT---GATTTAGAATTACTTTAGAATAAGAAAAATATTGAACTGGTAAAACCTTTAGAAATAGCTTACTTAGAAAGGTTTAAAAGCATGTATATATTTTCTTGACCCATTTTTTCAGATAAGATGGCTGAAGTTCTA-AAGACAAGTAGAAAATTGTACAATGCAGAGGAATCAAAAGCCAAAT-------GAGATGCA---------------------------CATCAACAAGATGA-------------------------------TGGATT-----------------------------AAAAAAA------ATG-CTTAGCATGAAACTGCTTTCATTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112848532 302 + 159171411 CCACTAAAACTCTAAAAATAAATTTTTAAAAGTAGATAAAGGTAAAAAATTTAGTATGATGATTTAGAATTACTTTAGAGTAGGAAAAATATTGAACTGGTAAAACCTTTAGCAATAGCTTACTTAGAAAGGCTTAAAAACATGTATATGTTTTCTTGAACCA-ATTTTAAGATAAGATGGCTCAAGTTCTA-AAGATAATAGAGGGATTGCACCTTGCAGAGGAATCAGAAGCCAAAT-------GAGATGCA---------------------------TATCAACAAGATGA-------------------------------TGGATC----------------------------AAAAAAAA------ATGTTTTAGCATGAAACTGCTTTTATTTT i calJac3.chr5 C 0 M 6125 s canFam3.chr9 39397359 394 - 61074082 CTACTAAAACCCTAATGATAGAATTATTTAAATACATAAAGATGTAAAACTTACTATGATGTTTTAGAATTGCTTTAGAGTAGGAAAAACATTAAACTAGTAGAA-CTTTAGAAATATTTTACTTTGAACATCTTAAAGA-----ATATGTTTCCTTGACCCA--TTTTCATGTAAAATGGCTTAGGCTTTAAAAAATAAGTAGAAAATTATGCAACAAAAAGGAATCAGAAGCCAAAATCACAAGAAGATGGATCGAAAGGGTGCTTAactgagtggggcacttgacaggatgagcattgactgttatgctatatgttggcaaattgaactccaataaaaaaataataaaagaaaaagaaaAAAAAAGAAAGCATG-CTTAACATGAAATTGCTTTCATTTT i canFam3.chr9 I 214 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99567631 0 + 122082543 C a score=424231.000000 s hg38.chr17_JH159146v1_alt 160107 205 + 278131 AGCCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATCAAAATTAGAATTTACATATAAAATGCTcattgattgaacacctgttgtatgttgggcatcatgcaaaaagtcg----caataggctcctgcccttacaggggtcatagagaagaagacagacacagaga s panTro4.chr17 66279113 205 - 82630442 AGCCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATCAAAATTAGAATTTACATATAAAATGCTcattgattgaacacctgttgtatgttgggcatcatgcaaaaagtcg----caataggctcctgcccttacaggggtcatagagaagaagacagacacagaga i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48036698 205 - 81552678 AGCCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTGTTAGATATTTACATATCAAAATTAGAATTTGCATATAAAATGCTCAGTGGTTGAACACCTGTTGTATGTTGGGCATCATGCAAAAAGTCG----CAATAGGCTCCTGCCCTTACAGGGGTCATGGAGAAGAAGACAGACACAGGAA i nomLeu3.chr19 C 0 M 3715 s rheMac3.chr16 53140835 205 + 80904711 AGCCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATTAAAATTAGAATTTACATATCAAATGCTcattgattgaacacctgctgtacgttgggcatcatgcaaaaagttg----caataggctcctgcccttacaggggtcatagaaaagaagagagacacagaga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52706343 205 + 80997621 AGTCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATTAAAATTAGAATTTACATATCAAATGCTcattgattgaacacctgctgtacgttgggcatcatgcaaaaagttg----caataggctcctgcccttacaggggtcatagaaaagaagagagacacagaga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47708782 205 + 74645514 agccatttt----cttATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATCAAAATTAGAATTTACATATCAAATGCTCATTGATTGAACACCTGCTGTACGTTGGGCATCATGCAAAAAGTCA----CAATAGGCTCCTGCCCTTACAGGGGTCatagaaaagaagagagacacagaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9975701 205 - 75148670 AGCCATTTT----CTTATTGGAATGATTTTGCAGTTTTGGATTCCTATGCTAGAATTT------------ACAT--CTCTCTTAGATATTTACATATCAAAATTAGAATTTACATATCAAATGCTcattgattgaacacctgctgtacgttgggcatcatgcaaaaagtcg----caataggctcctgcccttacaggggtcatagaaaagaagagagacacagaga i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39397753 206 - 61074082 AGCCATTTTAGCCACTACTAGAATGATTTTGTGGTTTTGG-TTCCTCTGCTAAAATTTTGCTTGTTGTCCACATTCCTTCCATAGATATCTCTTAGTCCA---------------GTCAAAACCTcattcatggaacacctgctataagtcagacattacacaaaaaaaagaagcaaagaggtgcctgaccttgaggaggttgtagagaag-----agacacagaga i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99567631 0 + 122082543 C e calJac3.chr5 112848834 6125 + 159171411 M a score=413351.000000 s hg38.chr17_JH159146v1_alt 160312 271 + 278131 agtaaaccagcaaacaataacaaaggattgtacatttagattttccaggttatgatatgagaatttagaggtagaagcca--------cagacttctcctagaaaacttaggaagcccttcacaaaaagagaacatctgtttggatcttgaagggtgaaaaggagctgagcagatagaaataaataggaaggagatttcagc--------cattgaaacaaaatgccacagggcccccatggtatgacaaaaagtgttgcctggttgaag-------catAGGTTCTGAATCTG---------------------------- s panTro4.chr17 66279318 271 - 82630442 agtaaaccagcaaacaataacaaaggattgtacatttagattttccaggttatgatatgagagtttagaggtagaagcca--------cagacttctcctagaaaacttaggaagcccttcacaaaaagagaacatctgtttggatcttgaagggtgaaaaggagcttagcagatagaaataaataggaaggagatttcagc--------cattgaaacaaaatgccacagggcctccatggtatgacaaaaagtgttgcctggttgaag-------catAGGTTCTGAATCTG---------------------------- i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53141040 271 + 80904711 agtaaaccagcaaacaataacaaaggattgtacatttagattttccaggttatgatatgagagtttagagatagaagcta--------tagactttacctggaaaacttaggaagcccttcacagaaagagagcatttgtttggatcttgaagggtgaaaaggagcttagcagatagagataaataggaaggggatttcagc--------cattgaaacaaaatgccacggggcactcatgggaggacaaaaagtgttgcctggttgaag-------catAGGTTCTGAATCTG---------------------------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52706548 271 + 80997621 agtaaaccagcaaacaataacaaaggattgtacatttagattttccaggttatgatatgagagtttagagatagaagcta--------tagactttacctggaaaacttaggaagcccttcacagaaagaaagcatttgtttggatcttgaagggtgaaaaggagcttagcagatagagataaataggaaggggatttcagc--------cattgaaacaaaatgccacggggcactcatgggaggacaaaaagtgttgcctggttgaag-------catAGGTTCTGAATCTG---------------------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47708987 271 + 74645514 agtaaaCCAGCAAACAATAACAAAGGATTGTACATTTAGATTTTCCAGGTTATGATATGAGAGTTTAGAGATAGAAGCTA--------TAGACTTTACCTGGAAAACTTAGGAAGCCCTTCACAGAAGGAGAACATTTGTTTGGATCTTGAAGGGTGAAAAGGAGCTTAGCAGATAGAGATAAATAGGAAGGGGATTTCAGC--------CATTAAAACAAAATGCCACGGGGCACTCATGAGAGGACAAAAAGTGTTGCCTGGTTGAAG-------TATAGGTTCTGAATCTG---------------------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9975906 279 - 75148670 agtaaaccagcaaaccataacaaaggattgtacatttagattttccaggttatgatatgagagtttagagatagaagctatagacttttagactttacctggaaaacttaggaagcccttcacagaaagagaacatttgtttggatcttgaagggtgaaaaggagcttagcagatagaaataaataggaaggagatttcagc--------cattaaaacaaaatgccacggggcactcatgggaggacaaaaagtgttgcctggttgaag-------catAGGTTCTGAATCTG---------------------------- i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39397959 309 - 61074082 cgtgaactggcaaatgacaacacagggttgtacattcaggttttctagatgat----tgggagcttagaagtaggtacca--------cagactttacctggaaggttcgggaagtacttcatgagaaggtagcagttgtgtaggtagagaaccatgattaggagcttagcaggtagaaaggaatagtcagagaatttcaacaggtgaagcagGGAAACAAAATGCCACAGTACGTTCATGGGATGAC-AAAAGCATTGCTTGGGAGAAGCACAAAACATGGATTCTGGATTTCCCTTACTTGGGGAGGCTGTggagaacag i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24805283 30000 - 73212453 M e mm10.chr11 99567631 0 + 122082543 C e calJac3.chr5 112848834 6125 + 159171411 M e nomLeu3.chr19 48036903 3715 - 81552678 M a score=245712.000000 s hg38.chr17_JH159146v1_alt 160583 115 + 278131 TTGGA-ATGAAGACGGAAAGGTGGGTTAGTGCCACAGTATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCAATAGGCATTATGTAA s panTro4.chr17 66279589 119 - 82630442 TTTGA-ATGAAGATGGAAAGGTGGGTTAGTGCCACAGTATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCCTCTTTTAAGGCAATAGGCATTATGTAA i panTro4.chr17 C 0 I 102 s ponAbe2.chr17_random 8302965 115 - 17838096 TTGGA-ATGAAGATGGAAAGGTGGGTTAGTGCCACAGTATGAAGAATTTGTACTGTGCTTAGTGTCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCGATGGGCATTATGTTA i ponAbe2.chr17_random n 0 C 0 s rheMac3.chr16 53141311 115 + 80904711 TTGGA-ATGGAGGTGGAAAGATGGGTTAGTGCCATAGCATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCAATGGTCATTATCTAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52706819 115 + 80997621 TTGGA-ATGGAGGTGGAAAGATGGGTTAGTGCCATAGCATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCAATGGTCATTATCTAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47709258 115 + 74645514 TTGGA-ATGGAGGTGGAAAGATGGGTTAGTGCCATAGCATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCAATGGTCATTATCTAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9976185 115 - 75148670 TTGGA-ATGGAGGTGGAAAGATGGGTTAGTGCCATAGCATGAAGAATTTGTACTGTGCTTAGTATCCTACACTTAGGATTTTGAACTTTATCTTGT----AGGCAATGGTCATTATCTAA i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39398268 115 - 61074082 tgggagatggagttggaaag-tgggtgagtgacacagtaggaagaatttgcactgtgcctagtatgctacactcaggactttgaacttcatcctct----tggcaaggaacattaatgaa i canFam3.chr9 C 0 C 0 e mm10.chr11 99567631 0 + 122082543 C e calJac3.chr5 112848834 6125 + 159171411 M e nomLeu3.chr19 48036903 3715 - 81552678 M a score=525737.000000 s hg38.chr17_JH159146v1_alt 160698 247 + 278131 AGGTTGCTGAACAGGCATGTGACATGACTAGA-----TTTTGGAAGGATACTGTAGTTTTTGAGGGAAGGCTCATCATGGTTATCATTGCcacttactaagtattaggtaatgtgctgagtgctttgcatgcattatttcatacagttcttacaacaaccttatgatgatgtatgcaatgatattatccttgccctttgacagacgaggaacctgcagcatagagaggctaagtagctagtgggtgagt-----agc s panTro4.chr17 66279810 247 - 82630442 AGGTTGCTGAATAGGCTTGCGACATGACTAGA-----TTTTGGAAAGATACTGTAGTTTTTGAGGGAAGGCTCATCATGGTTATCATTGCcacttactaagtattaggtaatgtgctgagtgctttgcatgcattatttcatacagttcttacaacaaccttatgatgatgtatgcaatgatattatccttgccctttgacagacgaggaacctgcagcatagagagtctaagtagctagtgagtgagt-----agc i panTro4.chr17 I 102 C 0 s ponAbe2.chr17_random 8303080 247 - 17838096 AGGTTGCTGAACAGGTATGTGACATGACTAGA-----TTTTGGAAAGATGCTGTAGTTTTTGAGGGGAGGCTCACCATGGTTATCATTGCcacttactaagtattaagtaatgtgctgagtgctttgcatgcattatctcatacagttcttacaacaaccttataatgatgtatgcaatgatattttccttgccctttgacagatgaggaacctgaggcatagagaggctaagtagctagcgagtgagt-----agc i ponAbe2.chr17_random C 0 C 0 s rheMac3.chr16 53141426 247 + 80904711 GGGTTGCTGAACAGGTATGTGACATGACTAGA-----TTTTGGAAATACACTGTAGTTTTTGAGGGGAGGTTCATCATGGTTATCATTGTcacttactaagtattaggtaatgtgctgagtgctttgcatgcattgtctcatacagttcttacaacaaccttatgatgatgtatgcaatgatattatccttgccctttgacagacaaggaacctgaggcacagaggggctaagtagctagtgagtgagt-----agc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52706934 247 + 80997621 GGGTTGCTGAACAGGTATGTGACATGACTAGA-----TTTTGGAAATACACTGTAGTTTTTGAGGGGAGGTTCATCATGGTTATCATTGTcacttactaagtattaggtaatgtgctgagtgctttgcatgcattgtctcatacagttcttacaacaaccttatgatgatgtatgcaatgatattatccttgccctttgacagacaaggaacctgaggcacagaggggctaagtagctagtgagtgagt-----agc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47709373 247 + 74645514 GGGTTGCTGAACAGGTATGTGACATGACTAGA-----TTTTGGAAATACACTGTAGTTTTTGAGGGGAGGTTCATCATGGTTATCATTGTCACTTACTAAGTATTAGGTAATGTGCTGAGTGCTTTGCATGCATTGTCTCATACAGTTCTTAGAACAACCTTATGATGATGTATGCAATGATATTATCCTTGCCCTTTGACAGACAAGGaacctgaggcacagaggggctAAGTAGCTAGTGAGTGAGT-----AGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9976300 247 - 75148670 GGGTTGCTGAACAGGTATGTGACATGACTAGA-----TTTTGGAAATACACTGTAGTCTTTGAGGGGAGGTTCATCATGGTTATCATTGTcacttactaagtattaggtaatgtgctgagtgctttgcatgcattgtctcatacagttcttataacaaccttatgatgatgtatgcaatgatattatccttgccctttgacagacaaggaacctgaggcacagaagggctaagtagctagtgagtgagt-----agc i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39398383 241 - 61074082 aggtt-ttgaacagatatgggacatgattggatttgtttttagaaagacaac-tAGTTTTTGAGTAAAGGCTCAGC-TG-----CATCATTActtactaaatattaggccttgtgctgagtgctttatgtgtgtt-----acatagttcttaccacaagctt---atgatgtacgcaatgttgctatccttgccattttacagatgaggaacctggggcatagacaaactaactagtaaatgagtaagttatggagc i canFam3.chr9 C 0 C 0 e mm10.chr11 99567631 0 + 122082543 C e calJac3.chr5 112848834 6125 + 159171411 M e nomLeu3.chr19 48036903 3715 - 81552678 M a score=143996.000000 s hg38.chr17_JH159146v1_alt 160945 57 + 278131 tggcatttgaagccaagcagtatggcttcagactccatggtcttaatcactgtgcca s panTro4.chr17 66280057 57 - 82630442 tggcatttgaagccaagcaatatggcttcagactccatggtcttaatcactgtgcca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8303327 57 - 17838096 tggcatttgaagccaaacagtatggcttcagactccatggtcttaatcactgtgcca i ponAbe2.chr17_random C 0 C 0 s rheMac3.chr16 53141673 57 + 80904711 tggcatttgaagccaagtagtgtggcttcagatttcatggccttaatcactgtgcca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52707181 57 + 80997621 tggcatttgaagccaagtagtgtggcttcagatttcatggccttaatcactgtgcca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47709620 57 + 74645514 TGGCATTTGAAGCCAAGTAGTGTGGCTTCAGATTTCATGGCCTTAATCACTGTGCCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9976547 57 - 75148670 tggcatttgaagccaagtagtgtggcttcagatttcatggccttaatcactgtgcca i chlSab2.chr16 C 0 C 0 s mm10.chr11 99567631 54 + 122082543 TGGCATTTGAAGTCAACT-GTGTGTTTCCACATTCCATGTTCTTCACTACTTTAC-- i mm10.chr11 C 0 C 0 s canFam3.chr9 39398624 57 - 61074082 tagcatttgaagccaagcagtctggctccagattctgcactctcaaccactatgcca i canFam3.chr9 C 0 C 0 e calJac3.chr5 112848834 6125 + 159171411 M e nomLeu3.chr19 48036903 3715 - 81552678 M a score=743148.000000 s hg38.chr17_JH159146v1_alt 161002 260 + 278131 -----------------------gattCCCTCTTGCTT----------------TAGGGGTATTG-------------TCTGACTACAGTGCAGAAGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGAGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGAGTTTAGAG-CTATTTTCTTAATCAAAAGACTATGCTGTAGAAAGGAGGAAACTTGAAGACAAGGACAATAATTAGGAAACTATTTGGGTGTTCTAGGGGAGTGAGGAGTGTCTTAGAAGATAT--CATAGTTTTG s panTro4.chr17 66280114 260 - 82630442 -----------------------gattCCCTCTTGCTT----------------TAGGGGTATTG-------------TCTGACTACAGTGCAGAAGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGAGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGAGATTAGAG-CTATTTTCTTAATCAAAAGACTATGCTGTAGAAAGGAGGAAACTTGAAGACAAGGACAATAATTAGGAAACTATTTGGGTGTTCTAGGGGAGTGAGGAGTGTCTTAGAAGATAT--CATAGTTTTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8303384 260 - 17838096 -----------------------gattCCCTCCTGCTT----------------TAGGGGTATTG-------------TCTGACTACACTGCAGAAGACCCTCAAGATTAGTTGAGTGTAAGACTGGTAGGAAGGATGAGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGAGTTTAGAG-CTATTTTCTTAGTCAAAAGACTACGCTGTAGAAAGGAGGTAATTTGAAGACAAGGACAATAATTAAGAAACTATTTGGGTGTTCTAGGGGAGTGAGGAGTGTCTTAGAAGATAT--CACAGTTTTG i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48040633 260 - 81552678 -----------------------GATTCCCTCTTGCTT----------------TAGTGGTATTG-------------TCTGACTACACTGCAGAAGACCCTCAAGATTTGTTGAGTGTAAGATTTGTAGGAAGGATGAGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGAGTTTAGAG-CTATTTTCTTAGTCAAAAGACTATGCTGTAGAAAGGAGGTAATTTGAAGACAAGGACAATAATTAGGAAACTATTTGGGTGTTCTAGGGGAGTGAGGAGTGTCTTAGAAGATAT--CATAGTTTTG i nomLeu3.chr19 M 3715 C 0 s rheMac3.chr16 53141730 260 + 80904711 -----------------------gattCCCTCTTGCTT----------------TAGGGGTATTG-------------TCTGACTACAGTGCAGAGGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGGGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAAGGGA-GTTGGGTTTAGAT-CTATTTTCGTAATCAAAAGACTATGCTGTAGAAAGGAGGTAATTTGAAGACAGGGACGATAATTAGGAAGCTATTTGGGTGTTCTAGGGGAGTGAGGAGTATCTTAGAAGATAT--CATAGTTTTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52707238 260 + 80997621 -----------------------gattCCCTCTTGCTT----------------TAGGGGTATTG-------------TCTGACTACAGTGCAGAGGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGGGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAAGGGA-GTTGGGTTTAGAT-CTATTTTCGTAATCAAAAGACTATGCTGTAGAAAGGAGGTAATTTGAAGACAGGGACGATAATTAGGAAGCTATTTGGGTGTTCTAGGGGAGTGAGGAGTATCTTAGAAGATAT--CATAGTTTTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47709677 260 + 74645514 -----------------------GATTCCCTCTTGCTT----------------TAGGGATATTG-------------TCTGACTACAGTGCAGAGGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGGGGCCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGGGTTTAGAT-CTATTTTCGTAATCAAAAGACTATGCTGTAGAAAGGAGGTAATTTGAAGACAGGGACAATAATTAGGAAGCTATTTGGGTGTTCTAGAGGAGTAAGGAGTATCTTAGAAGATAT--CATAGTTTTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9976604 260 - 75148670 -----------------------gattCCCTCTTGCTT----------------TAGAGGTATTG-------------TCTGACTACAGTGCAGAGGACCCTCAAGATTAGTTGAGTGTAAGATTGGTAGGAAGGATGGGACCAGGTCATTGAAGGTCTTGGGACCAC--AAGGGGA-GTTGGGTTTAGAT-CTATTTTCGTAATCAAAAGACTATGCTGTAGAAAGGAGGTAATTTGAAGACAGGGACAATAATTAGGAAGCTATTTGGGTGTTCTAGGGGAGTGAGGAGTATCTTAGAAGATAT--CATAGTTTTG i chlSab2.chr16 C 0 C 0 s mm10.chr11 99567685 249 + 122082543 ------------------------ATGTCCTCCTGCTG----------------TGGGGGTGGTG------------TTCCTACCAGAAAGAGGAAGGCTTTCAATAT---GCAAATGTA-----GATAGGAAATGTTAGTCCAGGTTGTCCAAAGTCCTGGGGCCGT--AAGAGAAGGTTGACTTTACAGACTAGTTTCTTAATCAAAATTCTATGCTATACAAACAAGATGATTTGAAGGTAGGGGAAGTGACTGGGTTGATGTTGGTGACATGGAGGGGTGTGAGCAG-------GGAGGTATGGCATAGTTGTA i mm10.chr11 C 0 I 418 s canFam3.chr9 39398681 274 - 61074082 tactatGCCCTTTTATGCCATACTATGCCCTTTTACTTGGTATCAGGGTGGTGGTGGGGATGGTGGTGGAGGGACTGTTCTGACTAGAGTGAAAACAACCCTCAAGATGAGTTG---GTA----------GAAGGGTAGGATCAGGTTATTGAAAGTCTTGAGACCATAAAAGGGGA-GCTGATTTTAGAGCCTGTTTTCTTAACTAAAATGCTA-GCAGTAGAAAGGAAATAATTTGAAGGCAGGGACAGTGGTT------CTAT------------GGGGGGTGTTGAG-------GAGGGTAT--GAT--TTCTG i canFam3.chr9 C 0 C 0 e calJac3.chr5 112848834 6125 + 159171411 M a score=605679.000000 s hg38.chr17_JH159146v1_alt 161262 202 + 278131 TGGGAATAGAGAAGTGGGAGT-TACCAGAGATTTCTTATCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTGGTACAGCAGTTTCCACAATAAAATTAATATTTTTGTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTTCATGGattggat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg s panTro4.chr17 66280374 202 - 82630442 TGGGAATAGAGAAGAGGGTGT-TACCGGAGATTTCTTATCACATTATTCAGTTA-TTAGGGACCACCATCTGGGTGGTACAGCAGTTTCCACAATAAAATTAATATTTTTGTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTTCATGGattggat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8303644 202 - 17838096 TGGGAATAGAGAAGAGAGACT-TACCGGAGATTTCTTATCACATCATTCAGTTT-TTAGGGACCACCCTCTGGGTAGTACATCAGTTTCCACAATAAAATTAATATTTTTGTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTGcatgtatgagat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48040893 202 - 81552678 TGGGAATAGAGAAGAGGGACT-TACCGGAGATTTCTTATCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTGGTACGTCAGTTTCCACAATAAAATTAATATTTTTGTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTGcatgtattgggt--gtataccgtgtgtcaggcacggtgctaagta-ttatggtg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53141990 202 + 80904711 TGGAAATAGAGAAGAGGGACT-TATCAGAGATTTCTTACCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTAGTACATCAGTTTCCACAATAAAATTAATATTTTTCTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTGcatgtattggat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52707498 202 + 80997621 TGGAAATAGAGAAGAGGGACT-TATCAGAGATTTCTTACCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTAGTACATCAGTTTCCACAATAAAATTAATATTTTTCTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTGcatgtattggat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47709937 202 + 74645514 TGGAAATAGAGAAGAGGGACT-TATCAGAGATTTCTTACCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTAGTACATCAGTTTccacaataaaattaatatttttgtttttaaggtaatGGGAACA-------CTAATCCTCTGCTAACACTTTGCACGTATTGGAT--GTATACCATGTGTCAGGCATGGTGCTAAGTA-TTATTGTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9976864 202 - 75148670 TGGAAATAGAGAAGAGGGACT-TATCAGAGATTTCTTACCACATCATTCAGTTT-TTAGGGACCACCATCTGGGTAGTACATCAGTTTCCACAATAAAATTAATATTTTTGTTTTTAAGGTAATGGGAACA-------CTAATCCTCTGCTAACACTTTGCAGGtattggat--gtataccatgtgtcaggcatggtgctaagta-ttattgtg i chlSab2.chr16 C 0 C 0 s mm10.chr11 99568352 185 + 122082543 TGGGGATGGATAGGAAAACAT-AACCTAGGATTTCTCATCACATTGTTCAGTTT-GGGAGAACCATTTTCTAGGTGGCA-ATCAGTTCT-----TATGGTTTATATTCATATGTTTAAGATAACTGCAACA-------CTGATCCTCCACTAAAACTT------------AT--GTATTTGTTGTCTCAGGCATAATACTAAGTATTTAATATG i mm10.chr11 I 418 C 0 s canFam3.chr9 39398955 202 - 61074082 ---TCTTAGAGAAGAAGGGATATATCTGGGATTTCTCATCACGCTATGCAATTTCTTGGGGACCACT-----GGTGGCACATCAGTTTCCACAATAAAACT--CATTTGTGTTTTTAAGATGACTAGAATATGGTCATCTTATCCTCTGCtaataggtagcatttattgaatacatataccaagtgctaagcatagtgctgagta-tt-ttgtg i canFam3.chr9 C 0 I 602 e calJac3.chr5 112848834 6125 + 159171411 M a score=1039982.000000 s hg38.chr17_JH159146v1_alt 161464 432 + 278131 catcttcttccttacatcttacaaccctttaagatcactattgggtacactattactgtacccatttcccagatgatgaaaccaagaataaggatatta-agtaatgattctaaagtcacactactagtgaacgATGGCTCACCTAATA-------------------------------------------------GCAATAGTTTGCAC--------AAAATCG-----------------------------------ATAT---TTTTGTGGAAT--------------------------------------------------TAAATTTTATATAATTGTAGATTATGCTCATGTATTTTTTAAATTTA-TTAATGCCCTCAACAAAATGTCTAAGActatgctaggtgctaagcatagagcaataaacaggtcagataaggtccttgttgtca-------------agtgg-gag-agacagacaataagaaaactaacaaatgaataaataagaactccaga-----------------------------------------gaagtgccag------------ggagTGTA-TTACCTTAGTTAGAGTggtcagagtggctggactatagtgaaga s panTro4.chr17 66280576 428 - 82630442 catcttcttccttacatcttacaaccctttaagatcactattgggtacactattactgtacccatttcccagatgatgaaaccaagagtaaggagatta-a----tgattctaaagtcacactactagtgaacgATGGCTCACCTAATA-------------------------------------------------GCAACAGTTTGCAC--------AAAATCA-----------------------------------ATAT---TTTTGTGGAAT--------------------------------------------------TAAATTTTATATAATTGTAGATTATGCTCATGTACTTTTTAAATTTA-TTAATGCCCTCAACAAAATGTCTAAGActatgctaggtgctaagcatagagcaataaacaggtcagataaggtccttgttgtca-------------agtgg-gag-agacagacaataagaaaactaacaaatgaataaataagaactccaga-----------------------------------------gaagtgccag------------ggagTGTA-TTACCTTAGTTAGAGTggtcagagtggctggactatagtgaaga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8303846 432 - 17838096 caacttcttcctcatatcttacaaccctttaagatcactgctggatacactattactgtacccatttcccagatgatgaaaccaagagtaaggatatta-agtaatgattctaaagtcacactgctagtgaatgATGGCTCACCTAATA-------------------------------------------------ACAATAGTTGGCAC--------AAAATCA-----------------------------------ATAT---TTTTGTGGAAT--------------------------------------------------TAAATTTTATATAATTGTAGATTATGCTCATGTACTTTTaaaattta-ttaatgccctcaacaaaatgtctaagactatgctaggtactaagcatagagcaataaacaggtcagataaggtccttgttgtca-------------agtgg-gag-agacagacaataaaaaaactaacaaatgaataaataagaactccaga-----------------------------------------gaagtgccag------------ggagtgta-ctaacttagttagagtggtcagagtggctggactatagtgaaga i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48041095 431 - 81552678 catcttcttccttacatcttacgaccctttaagatcactattgggtgcactattactgtagccatttcccagatgatgaaaccaagagtaaggatgtta-agtaatgattctaatgtcacactgctagtgaatgATGGCTTACCTAATA-------------------------------------------------GCAATAGTTTGCAC--------AAAATCA-----------------------------------ATAT---TTTTGTGGAAT--------------------------------------------------TAAATTGTATATAATTATAGATTATGCTCATGTACTTTTTTAattta-ttaatgccctcaacaaaatgtctaagactatgttaggtgctaagtgtagagcaataaacaggtcagataatgtccttgttgtca-------------agcct-gc--aggtcgactctagaggatcccacaaatgaataaataagAACTCCAGA-----------------------------------------GAAGTGCCAG------------GGAGTGTA-CTACCTTAGTTAGAGTggtcagagtagctggactatagtgaaga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53142192 439 + 80904711 tatcttcttccttttatcttacagccctttaagatcactatggggtacactgttactgcacccatttcacagatgatgaaaccaagagtaaggatatta-agtaataatgttaaagttacac------CGAATGATGGCTCACCTGATA-------------------------------------------------GCAATCGCTTGCAC--------AAAATCA-----------------------------------ATAC---TTTTGTGGAAT--------------------------------------------------TAAATTTTATATAACTGTAGATTATGCTCATGTACTTTTaaaattta-ttaatgtcttcaacaaaatgtctaagactatgataggtgctaagcatagagcaataaacaggtcagataaggtccttgttgtcaaggtgttaattctagtgg-gag-aaacagacaat-aaaaaactaagaaatgaataaataagaacaccaga-----------------------------------------gaagtgccag------------ggagtgtacctaccttaattagagtggtcagagtggctggactacagtgaaga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52707700 439 + 80997621 tatcttcttccttttatcttacagccctttaagatcactatggggtacactgttactgcacccatttcacagatgatgaaaccaagagtaaggatatta-agtaataatgttaaagttacac------TGAATGATGGCTCACCTGATA-------------------------------------------------GCAATCGCTTGCAC--------AAAATCA-----------------------------------ATAC---TTTTGTGGAAT--------------------------------------------------TAAATTTTATATAACTGTAGATTATGCTCATGTACTTTTaaaattta-ttaatgtcttcaacaaaatgtctaagactatgataggtgctaagcatagagcaataaacaggtcagataaggtccttgttgtcaaggtgttaattctagtgg-gag-aaacagacaat-aaaaaactaagaaatgaataaataagaactccaga-----------------------------------------gaagtgccag------------ggagtgtacctaccttaattagagtggtcagagtggctggactacagtgaaga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47710139 434 + 74645514 TATCTTCTTA----TATCTTACAG-CCTTTAAGATCACTATGGGGTACACAGTTACtgcacccatttcacagatgatgaaACCAAGAGTAAGGATATTA-AGTAATAATGTTAAAGTCACAC------CGAATGATGGCTCACCTGATA-------------------------------------------------GCAATCGCTTGCAC--------GAAATCA-----------------------------------ATAC---TTTTGTggaat--------------------------------------------------taaattttatgtaactGTAGATTATGctcatgtacttttaaaattta-ttaatgtcTTCAACAAAATGTCTAAGACTATGCTAGGTGCTAAGCATAGAGCAATAAACAGGTCAGATAAGGTCCTTGTTGTCAAGGTGTTAATTCTAGTGg-gag-aaacagacaat-aaaaaactaagaaatgaataaataagaactCCAGA-----------------------------------------GAAGTGCTGG------------GGAGTGTACCTACCTTAATTAGAGTGGTCAGAGTGGCTGGACTACAGTGAAGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9977066 437 - 75148670 tatcttcttccttatatcttacagccctttaagatcactatggggtacacagttactgcacccatttcacagatgatgaaaccaagagtaaggatatta-agtaataatgttaaagtcacac------CGAATGATGGCTCACCTGATA-------------------------------------------------GCAATCGCTTGCAC--------AAAATCA-----------------------------------ATAT---TTTTGTGGAAT--------------------------------------------------TAAATTTTATACAACTGTAGATTATGCTCATGCACTTTTTAAattta-ttaatgtcctcaacaaaatgtctaagacgatgctaggtgctaagcatagagcaataaacaggtcagataaggtccttgttgtcaaggtgttaattctagtgg-gag-aaacagacaataaaaaaactaagaaatgaataaat---aactccaga-----------------------------------------gaagtgccgg------------ggagtgtacctaccttaattagagtggtcagagtggctggactatagtgaaga i chlSab2.chr16 C 0 C 0 s mm10.chr11 99568537 592 + 122082543 CATGTTCTTTCT-ATATCCTA--------TAAGACCAA----------------ACTATGCCCACTTTCTTGGTGATAAA---AAGAGCAAAGATATTATATTATTGAGTATGGAGTTGCATGGCTAATGAAAAATGACTTAGCTGACACCATAGCTCATGGAAGTGTatacacacacatgtacacacatacacatacacacacgcatgcac--------acacacacacacacacacacacacacacacacagatacacacatacCCATTctgaggaattgaacatagggtcttgcaagtgctctacccttgagctatatcttaagtcctaaattttatataattataa-------ttatatattttttC-ATTTA-CTAA--CCCATTAAAAAATAACCTGTGCTATGTTTGGTAGTAAGAGTACACCAATAAACA-TTCAGATTGGCTCCTTGTTACAG---TGTCTATCGTAGTAACGTC-AACCTGATGGCCATGAAATAAACCATTGAACACCTAAGAACTTTAGACAGTGACAGGTGCTAGAAGGAAAGAAAGCACACTGACACATGGAGTGACAGGGAGATAGCAATGGAGGGTGGCCCCTGTGATTAGGGAAGTCAGAG-GTCT---TCTTAGCCAGGG i mm10.chr11 C 0 I 5 s canFam3.chr9 39399759 397 - 61074082 cattttcttctttatttcttataaccctataagatca---------ggactattaatacacctaattctcagaagacaaaactgagagtaaggataata-aataatgat-ttaaagtcatacacctagtgaatgacagCTTGTCTAACA-------------------------------------------------GCAATTCTTCATATTTATAGTAAAAATTA-----------------------------------GCAT---TTTTCTGGGAT--------------------------------------------------TAAATTTTACACAACTGTAAACTGTattcattcattttttaaaattagttaattcattcagcaaaatacccagcaccatggtaggtgctatgcatatagaagttaacaggtcggataagagccttgtggtcagggtattcattctagtag-gggaagataggcaataaaaaa------aaataaagaaatgacaat----ga-----------------------------------------gaagtaacag------------gt------------------------gccagaa---------------gaaaa i canFam3.chr9 I 602 C 0 e calJac3.chr5 112848834 6125 + 159171411 M a score=105079.000000 s hg38.chr17_JH159146v1_alt 161896 57 + 278131 caaggagcgtaataggaaatgaggttacagaa-g----gtggcaggtg--gcaggccgtgtagg s panTro4.chr17 66281004 57 - 82630442 gaaggagtgtaataggaaatgaggttacagaa-g----gtggcaggtg--gcaggccgtgtagg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8304278 57 - 17838096 gaaggagtgtaataggaaatgaggttacagaa-g----gtggcaggtg--gcaggccgtgtagg i ponAbe2.chr17_random C 0 C 0 s rheMac3.chr16 53142631 57 + 80904711 gaaggaatgtaacaggaaatgaggttacagaa-g----gtggcaggtg--gcagggcgtgtagg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52708139 57 + 80997621 gaaggaatgtaacaggaaatgaggttacagaa-g----gtggcaggtg--gcagggcgtgtagg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47710573 56 + 74645514 GAAGGAATGT-ATAGGAAATGAGGATACAGAA-G----GTGGCAGGTG--GCAGGGCGTGTAGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9977503 57 - 75148670 gaaggagtgtaataggaaatgaggttacagaa-g----gtggcaggtg--gcaagccgtgtagg i chlSab2.chr16 C 0 C 0 s mm10.chr11 99569134 57 + 122082543 GAAGAACTGTGATAGGAGACCGTATCAAAGTA-GTCATTCAGCAGCTG--GTCAGGCTCG---- i mm10.chr11 I 5 C 0 s canFam3.chr9 39400156 49 - 61074082 -------taaaatgg----tgaagtgacagagtg----gtgggaggtgatgcagggagtgcACT i canFam3.chr9 C 0 C 0 e calJac3.chr5 112848834 6125 + 159171411 M e nomLeu3.chr19 48041526 0 - 81552678 C a score=2584.000000 s hg38.chr17_JH159146v1_alt 161953 11 + 278131 --attttgaaggA s panTro4.chr17 66281061 11 - 82630442 --attctgaaggA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8304335 11 - 17838096 --attttgaaggA i ponAbe2.chr17_random C 0 C 0 s mm10.chr11 99569191 11 + 122082543 --GTTTTCAAGGA i mm10.chr11 C 0 I 276 s canFam3.chr9 39400205 6 - 61074082 CCATTG------- i canFam3.chr9 C 0 C 0 e calJac3.chr5 112848834 6125 + 159171411 M e chlSab2.chr16 9977560 0 - 75148670 C e papAnu2.chr16 47710629 0 + 74645514 C e macFas5.chr16 52708196 0 + 80997621 C e rheMac3.chr16 53142688 0 + 80904711 C e nomLeu3.chr19 48041526 0 - 81552678 C a score=12039.000000 s hg38.chr17_JH159146v1_alt 161964 63 + 278131 GTATAATAGGAAATAAGGTTACAGAAGGTGGCAG------GTGGCAGGTGGCAGGCCGTGTAGGATTTT s panTro4.chr17 66281072 63 - 82630442 GTATAATAGGAAATAAGGTTACAGAAGGTGGCAA------GTGGCAGGTGGCAGGCCGTGTAGGATTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8304346 56 - 17838096 GTGTGATGGGAAATAAGGTTACAGAAG-------------GTGGCAGGTGGCAGGCTGTGTAGGATTTT i ponAbe2.chr17_random C 0 C 0 s canFam3.chr9 39400211 38 - 61074082 -----------------GCCAGGGCAGTTGGCAACTTCTCTTgccaggtggctgg-------------- i canFam3.chr9 C 0 C 0 e mm10.chr11 99569202 276 + 122082543 I e calJac3.chr5 112848834 6125 + 159171411 M e chlSab2.chr16 9977560 0 - 75148670 C e papAnu2.chr16 47710629 0 + 74645514 C e macFas5.chr16 52708196 0 + 80997621 C e rheMac3.chr16 53142688 0 + 80904711 C e nomLeu3.chr19 48041526 0 - 81552678 C a score=25079.000000 s hg38.chr17_JH159146v1_alt 162027 62 + 278131 GAAGGAGTATAATAGGAAATAAGGTTacagaaggtggcaggtggcagg-------ccgtgtaggatttt s panTro4.chr17 66281135 69 - 82630442 GAAGGAGTATAATAGGAAATAAGGTTACAcaaggtggcaggtggcaggtggcaggccgtgtaggatttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8304402 62 - 17838096 gaaggagtataataggaaataaggttacagaaggtggcaggtggcagg-------ccgtgtaagatttt i ponAbe2.chr17_random C 0 I 206 s nomLeu3.chr19 48041526 62 - 81552678 gaaggagtgtaataggaaatgaggttacagaaggtggcaggtggcagg-------ccatgtaggatttt i nomLeu3.chr19 C 0 C 0 s canFam3.chr9 39400249 13 - 61074082 ------------------------------agtgtggcaaatg-------------------------- i canFam3.chr9 C 0 C 0 e mm10.chr11 99569202 276 + 122082543 I e calJac3.chr5 112848834 6125 + 159171411 M e chlSab2.chr16 9977560 0 - 75148670 C e papAnu2.chr16 47710629 0 + 74645514 C e macFas5.chr16 52708196 0 + 80997621 C e rheMac3.chr16 53142688 0 + 80904711 C a score=20850.000000 s hg38.chr17_JH159146v1_alt 162089 53 + 278131 gaaggagtataataggaaataaggtt-acagaaggtggcaggtggcaggccatg s panTro4.chr17 66281204 53 - 82630442 gaaggagtataataggaaataaggtt-acagaagatggcaggtggcaggccatg i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48041588 53 - 81552678 gaaggagtataataggaaataaggtt-atagaaggtggcaggtggcaggccatg i nomLeu3.chr19 C 0 C 0 s canFam3.chr9 39400262 52 - 61074082 --aggagtgtgaaagtagatgaagttcatggaggtaggtaggtgccgggccatg i canFam3.chr9 C 0 C 0 e ponAbe2.chr17_random 8304464 206 - 17838096 I e mm10.chr11 99569202 276 + 122082543 I e calJac3.chr5 112848834 6125 + 159171411 M e chlSab2.chr16 9977560 0 - 75148670 C e papAnu2.chr16 47710629 0 + 74645514 C e macFas5.chr16 52708196 0 + 80997621 C e rheMac3.chr16 53142688 0 + 80904711 C a score=2519.000000 s hg38.chr17_JH159146v1_alt 162142 4 + 278131 taga s panTro4.chr17 66281257 4 - 82630442 taga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8304670 4 - 17838096 TAGG i ponAbe2.chr17_random I 206 C 0 s nomLeu3.chr19 48041641 4 - 81552678 caga i nomLeu3.chr19 C 0 C 0 s canFam3.chr9 39400314 4 - 61074082 tagg i canFam3.chr9 C 0 C 0 e mm10.chr11 99569202 276 + 122082543 I e calJac3.chr5 112848834 6125 + 159171411 M e chlSab2.chr16 9977560 0 - 75148670 C e papAnu2.chr16 47710629 0 + 74645514 C e macFas5.chr16 52708196 0 + 80997621 C e rheMac3.chr16 53142688 0 + 80904711 C a score=136989.000000 s hg38.chr17_JH159146v1_alt 162146 51 + 278131 attttttagttgttct-acacagtttagattttactctaaggg-tgttgaaat- s panTro4.chr17 66281261 51 - 82630442 attttttagttgttct-acacagtttagattttactctaaggg-tgttgaaat- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8304674 53 - 17838096 ATTTTTTAGTTGTTCTCACACAGtttagattttactctaagggttgttgaaat- i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48041645 51 - 81552678 attttttagttgttct-acacagtttagattttactctaaggg-tgttgaaat- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53142688 51 + 80904711 actttttagttgttct-acacagtttagattttactctaaggg-tgttgaaat- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52708196 51 + 80997621 actttttagttgttct-acacagtttagattttactctaaggg-tgttgaaat- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47710629 51 + 74645514 ACTTTTTAGTTGTTCT-ACACAGTTTAGATTTTACTCTAAGGG-TGTTGAAAT- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9977560 51 - 75148670 actttttagttgttct-acacagtttagattttactctaaggg-tgttgaaac- i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39400318 50 - 61074082 attttgtag--gctca-atagagtttaggttttattctaaagg-cactgagaat i canFam3.chr9 C 0 C 0 e mm10.chr11 99569202 276 + 122082543 I e calJac3.chr5 112848834 6125 + 159171411 M a score=1571232.000000 s hg38.chr17_JH159146v1_alt 162197 565 + 278131 ccact-ggatgacttaaagaagggagtgataacattttccttatgttcaaaggaaaatgaactacagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgaggatagacagttgatgctagtttttgatgaactgttaagaagtggtagagtttggaa-gcccttttgaaagtggagatgataggtcatgctgattgagaggatgtgt-------ggAG-------CCAAGGATCAT----GTCTAGGTGTCAGATTTACTCGTAGAAACA-------------------GCT-----------GCTGTCTGGGGTGATAGGAA---AGGGATTGGAGATGAGTTTAGTTTGGGACCTACA-GACAAAGCATCCTGAAG-CCGTGAGAGGGAGCAGAGCTGGACGTGCAGATTTGGGAGGCTCCAACATACAGG-AAAAATTTTGCTTACAATGATGTGCCTGGACTGAGA-ACGAGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACGAATATCCATCTCCCAACAACTCAGTGAATTTGTGGGTGGCTGTTGGGAAACACCTTCCACAGTGTCACCTCCTGAGTCAGCAGG s panTro4.chr17 66281312 565 - 82630442 ccact-gaatgacttaaagaagggagtgataacattttccttatgttcaaaggaaaatgaattacagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgaggatagacagttgatgctagtttttgatgatctgttaagaagtggtagagtttggaa-gcccttttgaaagtggagatgataggtcatgctgattgagaggatgtgt-------ggAG-------CCAAGGATCAT----GTCTAGGTGTCAGATTTACTCTTAGAAACA-------------------GCT-----------GCTGTCTGGGGTGATAGGAA---AGGGATTGGAGATGAGTTTAGTTTGGGACCTACA-GACGAAGCATCCTGAAG-CCGTGAGAGGGAGCAGAGCTGGAGGTGCAGATTTGGGAGGCTCCAACATACAGG-AAAAATTTTGCTTACAATGATGTGCCTGGACTGAGA-ATGAGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACCAATATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACGGTGTCACCTCCTGAGTCAGCAGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8304727 565 - 17838096 ccact-ggatgacttaaagaagggagtgataagatgcgatttatgttcaaaggaaaatgaactgcagcagag-caaa-gtggaaactggcacaactaga--------aagtgtgaggatagacagttgatgctagtttttgatgaactgttaagaagtggtagagtttggaa-gcccttttgaaagtggagatgataggtcatgctgattgagaggatgtgt-------ggAG-------CCAAGGATCAT----ATCTAGGTGTCAGATTTACTCGTAGAAACG-------------------GCT-----------GCTGTCTGGGGTGATAGGAA---AGGGATTGGAGATGAGTTTAGTTTGGGACCGACA-GACAAAACATCCCGAAG-CTGTGAGAGGGAGCAGAGCTGGAGGTGCAGATTTGGGAGGCTCCAACATACAGG-AAAAATTTTGCTTTCAATGATGTGTGTGGACTAAGA-ATGAGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACCAATATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACAGTGTCACCTCCTGAGTCAGCAGG i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48041696 565 - 81552678 ccact-ggatgacttaaagaagggagtgataagttgcgatttatgttcaaaggaaaatgagctgcagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgaggatagacagttgatgctagtttttgatgaactgttaagaagtggtagagtttggaa-gcccttttgaaagtggagatgataggtcatgctgattgagaggatgtgt-------ggAG-------CCAGGGGTCAT----GTCTAGGTGTCAGATTTACTCGTAGAAATG-------------------GCT-----------GCTGTCTGGGGTGATAGGAA---AGGGATTGGAGATGAGTTTAGTTTGGTACCTACA-GACAAAGCATCGCGAAG-CCGTGAGAGGGAGCAGAGCTGGAAGTGCAGATTTGAGAGGCTCCAACATACAGG-AAAAATTTTGCTTACAATGATGTCCCTGGACCGAGA-ATGAGATAGTCACTTTTATGTGCATTAGTCATGTTCTGCTGTGAGCCACTTTTGTGCCTGACCAATATCCATCTCCCAACAACTCAGGAAATTT-TGGGTGGCTGTTGGGAAACGCCTTCCACAGTGTCACCTCCTGAGTCAGCAGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53142739 547 + 80904711 ccact-ggatgacttcgagaagggagtgataaggtgcgatttatgttcaaaggaaaatgaactgcagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgaggatagacagttgatgccagtttttgatgaactgttaagaggtggtagagtttggaa-gcccttttgaaagtggagatgaaaggtcatgctgattgagaggatgcgt-------ggAG-------CCAAGGATCAT----ATCTAGGTGTCAGATTTACTCGTGAAAAAG-------------------GCT-----------GCTGTCTGGAGTGATAGGAA---AGGGATTGGAGATGAATTTAGTTTGGGACCTACA-GACAAAGCGTCCTGAAG-CCGTGAGGGGAAGCCCAGCTGGAGGTGAAGATTTGGGAGGCTCCAACATATGGG-AAAAATTTTGCTTTTTTT-------------------ATGAGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACCAACATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACAGTGGCACCTCCTGAGTCAGCAGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52708247 547 + 80997621 ccact-ggatgacttcgagaagggagtgataaggtgcgatttatgttcaaaggaaaatgaactgcagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgaggatagacagttgatgccagtttttgatgaactgttaagaggtggtagagtttggaa-gcccttttgaaagtggagatgaaaggtcatgctgattgagaggatgcgt-------ggAG-------CCAAGGATCAT----ATCTAGGTGTCAGATTTACTCGTGAAAAAG-------------------GCT-----------GCTGTCTGGAGTGATAGGAA---AGGGATTGGAGATGAATTTAGTTTGGGACCTACA-GACAAAGCGTCCTGAAG-CCGTGAGGGGAAGCCCAGCTGGAGGTGAAGATTTGGGAGGCTCCAACATATGGG-AAAAATTTTGCTTTTTTT-------------------ATGAGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACCAACATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACAGTGGCACCTCCTGAGTCAGCAGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47710680 547 + 74645514 CCACT-GGATGACTTCGAGAAGGGAGTGATAAGGTGCGATTTATGTTCAAAGGAAAATGAACTGCAGCAGAG-CAAA-GTGGAAACTGGCACGACTAGA--------AAGTGTGAGGATAGACAGTTGATGCCAGTTTTTGATGAACTGTTAAGAGGTGGTAGAGTTTGGAA-GCCCTTTTGAAAGTGGAGATGAAAGGTCATGCTGATTGAGAGGATGCGT-------GGAG-------CCAAGGATCAT----ATCTAGGTGTCAGATTTACTCATGAAAAAG-------------------CCT-----------GCTGTCTGGAGTGATAGGAA---AGGGATTGGAGATGAATTTAGTTTGGGACCTACA-GACAAAGCGTCCTGAAG-CCGTGAGGGGAAGCCCAGCTGGAGGTGAAGATTTGGGAGGCTCCAACATATGgg-aaaaattttgcttttttt-------------------atgaGATAGTCACTTTTATGTGCGTTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCCTTACCAACATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACAGTGGCACCTCCTGAGTCAGCAGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9977611 547 - 75148670 ccact-ggatgagttcgagaagggagtgataaggtgcgatttatgttcaaaggaaaatgaactgcagcagag-caaa-gtggaaactggcacgactaga--------aagtgtgagggtagacagttgatgctagtttttgatgaactgttaagaggtggtagagtttggaa-gcccttttgaaagtggagatgaaaggtcatgctgattgagaggatgcgt-------ggAG-------CCAAGGATCAT----ATCTAGGTGTCAGATTTACTTGTGAAAAAG-------------------GCT-----------GCTGTCTGGAGTGATAGGAA---AGGGATTGGAGATGAATTTAGTTTGGGACCTACA-GACAAAGCATCCTGAAG-CCGTGAGAGGAAGCCCAGCTGGAGGTAAAGATTTGGGAGGCTCCAACATATGGG-AAAAATTTTGCTTTTTTT-------------------ATGAGATAGTCACTTTTATGTGCATTAGTCATGTTTTGCTGTGAGCCAC-TTTGTGCTTTACCAACATCCATCTCCCAACAACTCAGTGAATTTCTGGGTGGCTGTTGGGAAACGCCTTCCACAGTGGCACCTCCTGAGTCAGCAGG i chlSab2.chr16 C 0 C 0 s mm10.chr11 99569478 544 + 122082543 CTACTCGGTTGATTTAGAGCAGAGAGTGATAGGTT-----TCATGTTTGAAGGAGAATGATCTGCC-CAGGG-CAGGCATGGAAGTAGGCTGAATTATA--------------GAGGCTAGGCAA--GAGGGTAGACACTGAGCAACTGATACGAGAAGGCAGAGTTTGGGT-GACA-TTAGAAAGGAGGGGTGAGGTGTTTTGTTGACCGAGAGGCTGTATACGGAGAGAGG-------TCAGGAATCCTATCCATCCAGGTCTCAGATCTACTCATAGGAAGG-------------------GGCCCTGAGCAAAAGCTGCCTGG-GTGGTAGGAA---AGCGATCAATGTTGCCTTCAGTTTGGGGCCAACAGGGCCAAGC----------CCACGTGACCAAGTAGGGCTAGA-GTGAAGAGCTG-GCGGCTCCAGCACGCAGATGGAAATTCTGCTTACTAC----CTTCCAAACGGAGGCTCGTGATGCT---TTTTATATGTGTTAGTCACACTTTGTTGTGAGCCTC-CCAGTGCCTAA--------------CCAACAGCACCGTGGATTTCCGGGTTGATCTTGGGTGAACCCTCCCAGTCCGGCATCTCCTGATTCAGCTGC i mm10.chr11 I 276 C 0 s canFam3.chr9 39400368 562 - 61074082 gcact-ggatgctttggagcagggggcgataacatg----ttatgttctgcagaaagtgagatgcagcagggtcaaa-gtggaaacagacagaacaatcagtggtccaggtgagaggatgaacag-tgatgccagtgattgataaaccagtaagagttggaagagttggggatatgtttttgaaagtagagatgataggttgtgctgattaagaagacatgt-------ggagagagaaacaaaggaTCAT----ATTTAGGTCTCAGATTTACTCGTAGGTAAGAGGGGGCTTGAGCCACAGAGCT-----------GCCATCTGGAGTGGTGGGAAGCGGGGGAT----GGTGAGGTCATTGTAGGACCTGCA-GGATGAGCAGCCTGAAGCCCATGAGAGGTAGCAGGGCTGAAGACACAG------GAGGCTCCAACACCCAGACACAGAATGTGCTTACTACTAAGTTCCTGGCCTAGG--ATGAAA-GGTCACTTTTATGTGTGTTAGTCACAGTTTGT-----------TGTGTGCCTTACCAACATCC-----------------TGGATTTCTAGGGTGCTGTTGGGAAAACCCTCCCATGACGGCACCTCCCGAGTCAGCAAG i canFam3.chr9 C 0 C 0 e calJac3.chr5 112848834 6125 + 159171411 M a score=1389874.000000 s hg38.chr17_JH159146v1_alt 162762 392 + 278131 ------GATGTTAGGAAGCTTCACACCTTAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGTCTAGTAAATAAAAACATTT-----GGTCTTCATTTCCTGAATTGCATGATCTTTGAAACTGCCAGTG----CATTCCTTTATAGTATAGATTGAAAGAAAGAA-TGGCTGGTATCAAGGCTGCCATTGACATCAATTTATTCTTTGTTTA-------CTTTGCTATATGCTGAAAATTCATGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTGTTTTCCAGTTGCATCAGA---TTTTTTTTTTTTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC- s panTro4.chr17 66281877 392 - 82630442 ------GATGTTAGGAAGCTTCACACTTTAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGTCTAGTAAATAAAAACATTT-----GGTCTTCATTTCCTGAATTGCATGATCTTTGAAACTGCCAGTG----CATTCCTTTATAGTATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGACATCAATTTATTCTTTGTTTA-------CGTTGCTATATGCTGAAAATTCACACAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTGTTTTCCAGTTGCATCAGA---TTTTTTTTTTTTCCAGTTTTTGGTTATAGTCAAGCCTGATATATC- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8305292 395 - 17838096 ------GATGTTAGGAAGCTTCACACTTTTGGGCCACTCAATTTTCCTAAAGCCTGTT---GCAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGTCTGGTAAGTGAAAACATTT-----GGTCTTCATTTCCTGAACTGCATGATCTTTGAAACTGCCAGTG----CATTCCTTTATAGTATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGACATCAATTTATTCTTTGTTTA-------CTTTGCTATTTGCTGAGCATTCACGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTGTTTTCCAGTTGCATCAGATTTTTTTTTTTTTTTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC- i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48042261 393 - 81552678 ------GATGTTAGGAAGCTTCACCCTTTAGTGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCCTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGTCTAGTAAGTAAAAACATTT-----GGTCTTCATTTCCTGAACTGCATGATCTTTGAAACTGCCAGTG----CATTCCTTTATAGTATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGACATCAATTTATTCTTTGTTTA-------CTTTGCTATATGCTGAGCATTCATGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGAAGTGTTTTCCAGTTGCATCAGA--TTTTTTTTTTTTTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53143286 398 + 80904711 ------GGTGTTAGGAAGCTTCACACCTCAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGCCTAGTAAGTAAAAACATGT-----GGTCTTCATTTCCTGAATTGCATGATCTTTGAAACTGCCAGTGCATTCATTCCTTTGTAATACAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGATATCAATTTATTCTTTGTTTA-------CTTTGCTATTTGCTGAGCATTCACGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTTTTTTCCAGTTGCATCAGA-TTGCTTCTTTTTTTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52708794 398 + 80997621 ------GGTGTTAGGAAGCTTCACACCTCAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGCCTAGTAAGTAAAAACATGT-----GGTCTTCATTTCCTGAATTGCATGATCTTTGAAACTGCCAGTGCATTCATTCCTTTGTAATACAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGATATCAATTTATTCTTTGTTTA-------CTTTGCTATTTGCTGAGCATTCACGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTTTTTTCCAGTTGCATCAGA-TTGCTTCTTTTTTTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47711227 398 + 74645514 ------GGTGTTAGGAAGCTTCACACCTCAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTTTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGCCTAGTAAGTAAAAACATGT-----GGTCTTCATTTCCTGAATTGCATGATCTTTGAAACTGCCAGTGCATTCATTCCTTTGTAATATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGATATCAATGTATTCTTTGTTTA-------CTGTGCTATTTGCTGAGCATTCACGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTTTTTTCCAGTTGCAtcaga-ttgtttctttttttccagtttgtggGTATAGTCAAGCCTGATATATC- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9978158 394 - 75148670 ------GATGTTAGGAAGCTTCACACCTCAGGGCCACTCAATTTTCCTAAAGCCTGTT---GGAATTCTTCATCCCTTCA-CAAAAGCAGGATATAGAAACCTTTAAAGTTTGTCATCCTAATAAAAATGCCTAGTAAGTAAAAACATGT-----GGTCTTCCTTTCCTGAATTGCATGATCTTTGAAACTGCCAGTG----CATTCCTTTGTAATATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGCCATTGATATCAATTTATTCTTTGTTTA-------CTTTGCTATTTGCTGAGCATTCATGCAAAGGATTCTGGGCTTGGGTTAAATGGTGAAC-TTTGGGAGTTTTTTCCAGTTGCATCAGA-TTGTTTCTTTTTCTCCAGTTTGTGGTTATAGTCAAGCCTGATATATC- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112854993 387 + 159171411 ------GATAGTAGGAAGCTTCATTACTTCAGGGCAGTCAATTTCCTTAAAGGCGTGT---GGAAATTCTCATGCGTTCACCAAAAGCAGGATACAGAAACTTTTAAAA-TTGGCATCCTAATAAAAATGCTTAGTAAGTAAAAACATTT-----GGTCTTTATTTCCTGAAATGCATGATCTTTTAAACTGCCAGTG----CATTCCTTTATAATATAGATTGAAAGAAAGAA-TGGCTGGTATCAGGGCTGTTACTGACATCAATTTATTCTTTGTCTA-------ATTTGCTATTTGCTGAACAGTCTTGCAAAAGATTCTGAGCTTGGGTTAAATGGTGGCC-TTTGGGATTGTTATCCAATTGCATCAGA--------TTTTTTTTTAGTTTGTGGTTATACTCAAGCCTGATATAAC- i calJac3.chr5 M 6125 C 0 s mm10.chr11 99570022 374 + 122082543 ------TGTGCTAAGCAGCTTCCCACTCGTGGGTCACTCAGTACTTCCGAAACTGTTTGGAGGAGGAGTTTATCTCTTCA-TCATAG-------TAGAAATC-TTAAGGTTTCTCACTCTAATAAAAGTGGCT-GTGAGCAAGAACATTTAGGTAGGTCTGTCTTACACAATCTTCCTGGTTTCTGATA-------------TTTTACTTTATAAAGAAGATGGAAGGGAAATG-TGGTCGTCATCAGGGCTGCTGGGAATATTGATCTTCGCACTGCAGA-------ATGCCCATTTTGTGGAGCATACATGCAAAGAATTTTAAGCCTGGGTTAAGTGGTGCCCATCTCAGA----CATCCTGTAAAATGGTG--------TTTTTCTCTAGTTTGTAGTTAGAGTCAAGTCTGACATAAC- i mm10.chr11 C 0 I 251 s canFam3.chr9 39400930 391 - 61074082 AATGTCAGTGTGGGGAGATTTCACACTTCGAGGCAACTCAATTTTCTTTAAGCCTGAT---GGAGCACTTCATTCCTTCA-CACAAGCAGGTATTAGGAGCCTTTTCAGTTTGTCATCCTAATAAAAATGCCT-GTAAGTAAAAACATTC-----AGTCTTTGTTTTCTGAATTGCATGATCTTTTCTATTTCTGGTG----AACTCCTTAATAATAGCAGTTGGAAGAAAAAAGTATCTGGCTTCAGGACTGCTATTGGCATCAGTCCTTTCATTGTATAATGTCCGCTTTATTCTTTGCTGAGCAGGCAGGGAGAGGATTCTGGGTTTGGGTTAAATGGTGTAC-TTTTGGGGCCTTTTCCAG-------ATA-----------TTTTCTAGTGTGTCGTTATAGCCAAGACAGATAAGTGC i canFam3.chr9 C 0 C 0 a score=1193136.000000 s hg38.chr17_JH159146v1_alt 163154 360 + 278131 TC--ATCACC-TTATTAGCTTGCACTGAAAATTACCCCCAAATTG---AATTTCTTTTAAATGGAAGTAGTGGTGTTTTCCACTTGAGGACATC---TGATAGT----------------------------------------CTCTATA----ATTGTCATCTG----------GCAACATG-CAGGGCT-------------------GAT------CTCATAGCTTTCAGTCCCGTGGCACATGCAACATTCTTGCAAGTGATTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTT-TTCCTGGGAA-----CCCTAGGCTTTCAGTTTAATTCTTATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTCTTTATGATTAACTAATATATAAAA-ATATGTG-TTAACTAAAATTAATATGTTTAGGAAAATAGAcact s panTro4.chr17 66282269 360 - 82630442 TC--ATCACC-TTATTAGCTTGCACTGAAAATTACCCCCAAATTG---AATTTCTTTTAAATGGAAGTAGTGGTGTTTTCCACTTGAGGACATC---TGATAGT----------------------------------------CTCTGTA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTT-TTCCTGGGAA-----CCCTAGGCTTTCAGTTTAATTCTTATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTCTATATGATTAACTAATATATAAAA-ATATGTG-TTAACTAAAATTAATATGTTTAGGAAAATAGAcact i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8305687 356 - 17838096 TC--GTCACC-TTATTAGCTTGCACTGAAAATTACCCCCAAATTG---AATTTCTTTTAAATGGAAGTAGTGGTGTTTTCCACTTGAGGACATC---TGATAGT----------------------------------------CTCTGTA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTGATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTT-TTCCTGGGAA-----CCCTAGGCTTTCAGTTTAATTCTTATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTCTATATGAT----TAATATATAAAA-ATATGTG-TTAACTAAAATTAATATGTTTAGGAAAATAGAcact i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48042654 362 - 81552678 TCTTGTCACC-TTATTAGCTTGCACTGAAAATTACCCCCAAATTG---AATTTCTTTTAAATGGAAGTAGTGGTGTTTTCCACTTGAGGACATC---TGATAGT----------------------------------------CTCTATA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTAATT-TTCCTGGGAA-----CCCTAGGCTTTCAGTTTAATTCTTATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAATAGATAATTCTATATGATTAACTAATATATAAAA-ATATGTA-TTAACTAAAATTAATATGTTTGGGAAAATAGAcact i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53143684 359 + 80904711 TCTTGCCACCTTTATTAGCTTGCACTAAAAATTACCCCCAAATTG---AATTTCTTTTCAATGGAAATAGTGGTGTTTTCCACTTGAGGGCATC---TGATAGT----------------------------------------CTCTATA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTTCTTCCTGGGAA-----CCCTAGGCTCTCAGTTTAATTCTCATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTATGTATGat----taatatataaaa-atatgta-ttaact-aaattaatCTGTTTAGGAAAATAGAcact i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52709192 359 + 80997621 TCTTGCCACCTTTATTAGCTTGCACTAAAAATTACCCCCAAATTG---AATTTCTTTTCAATGGAAATAGTGGTGTTTTCCACTTGAGGGCATC---TGATAGT----------------------------------------CTCTATA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTTCTTCCTGGGAA-----CCCTAGGCTCTCAGTTTAATTCTCATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTATGTATGAT----TAATATATAAAA-ATATGTA-TTAACT-AAATGAATCTGTTTAGGAAAATAGAcact i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47711625 359 + 74645514 TCTTGCCACCTTTATTAGCTTGCACTAAAAATTACCCCcaaattg---aatttcttttaaatggaaatagTGGTGTTTTCCACTTGAGGGCATC---TGATAGT----------------------------------------CTCTATA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTTCTTCCTGGGAA-----CCCTAGGCTCTCAGTTTAATTCTCATGTATTATTGTAGGCTGTGGAGTATACAGATAGTAACAGATAATTATGTatgat----taatatataaaa-atatgta-ttaact-aAATTAATCTGTTTAGGAAAATAGACACT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9978552 359 - 75148670 TCTTGCCACCTTTATTAGCTTGCACTAAAAATTACCCCCAAATTG---AATTTCTTTTGAATGGAAATAGTGGTGTTTTCCACTTGAGGGCATC---TGATAGT----------------------------------------CTCTATA----GTTGTCATCTG----------GCAACATG-CAGAGCT-------------------GAT------CTCATAGCTTTCAGTCACGTGGCACATGCAACATTCTTGCAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTTACCTATTTTTTCCTGGGAA-----CCCTAGGCTCTCAGTTTAATTCTCATGTATTATTGTGGGCTGTGGAGTATAAAGATAGTGACAGATAATTATGTATGAT----TAATATATAAAA-ATATGTA-TTAACT-AAATTAATCTGTTTAGGAAAATAGAcact i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112855380 355 + 159171411 TCTTGCCACC-TTCTTAGCTTGCACTA---------CCCAAATTG---AATTTCTTTTAAATGGAAGTAGTGGTGGTTTCCACTCAAGGACGTCTGATGATAGT----------------------------------------CTCTGTA----GTTGTCATCTG----------GTAACCTG-CAGAGCT-------------------GAT------CTCATAGCTGTTAGTCACATGGCACATGCAACATTCTTGTAAGTGGTTGCTTAGCCA-------GC------TGGCTGGAAGTGTCACCTATTT-TTCCCGGGAA-----TCCTA-GCTTTCAGTTTGATTCTCATGTACTATTGTAGGTTGTGAAGTATGCAGATAGGAACAGATAATTATATATGATTAAGTAATATATAAAA-GTGTACA-TTAAATACAATTAATCTTTTTAGGAAAATAGAcact i calJac3.chr5 C 0 C 0 s mm10.chr11 99570647 406 + 122082543 CCTTGCTACT-ATATTATCTTGCACTGAAAATGGCCTTTAAGTTGTAACATTGTTTTTAGATGGCTTTAGTGATATTTTC----TGAGCTCAGT---TGTTATCCATGGCTGTTGTATAGGTGTGCAAAAGAGG-------CAACTCTCTC----ACTGTTTCCTG----------TGGACTTA-CTGATTTCATTGAATATGCCAGTAGAGAC------CTCATGGTGTTTAGTTACATGATACATGCAATATTCTTTCAAGTTCTTGCTTAACCA-------GCTTCCTTTGGCTGGAATTCTGAACCATTTTTTTTTGGGGGGGGGTCTGTAGGTTC---GCTTTAGTCTCACGTATTATTGTAAATTACAGAGGATGTAGAGAGAAAGAGAG-----------------TAGCATGCAGAA-GTAAATACTTTACCAAAGTTAATATGTCTAGGAAAAGGGACACT i mm10.chr11 I 251 I 744 s canFam3.chr9 39401321 366 - 61074082 --TTGCCAGC-TTATTAGCCTGTGCTG--------------ATTG---GGTTTCTTTTAAATGGAAGTAATGTT--TTGCGACTTGAAGACAGC---TGATACT---------------GACTTAAAAGGGATGAGCCCTTCCACTCTATCTCATGTGGACATGTATGATCTCAATGCAACATGCCAGGGCA-------------------GCTAGCCCCCTCACAGTACTCTGGCACACGGCACACACAA-----------------GCTTAGCCCAGCTTATGC------TGGCTGGCAGTGTTGCCTATTT-TTCTCGGGGG-------------------GTTAATTCTCATTCATTATTGTGGGCTATGGAATGTGCAGATAGTCATAGGATATTATACACAGTTAAGGAAAGTATAAAGTATATGTG-CTAAGTAAAATTAACCTGATTGGG-AAATAGATTTC i canFam3.chr9 C 0 C 0 a score=244656.000000 s hg38.chr17_JH159146v1_alt 163514 70 + 278131 ccataaaatttgagtacct---actatatgccaggcactggtaaaataaaATTTTCAGCTGCCTACTATGTGA s panTro4.chr17 66282629 70 - 82630442 ccataaaatttgagtacct---actatatgccaggcactggtaaaataaaATTTTCAGCTGCCCACTATGTGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8306043 70 - 17838096 ccataaaatttgagtacct---actatatgccaggcactggtaaaataaaATTTTCAGCTGCCTACTATGTGA i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48043016 70 - 81552678 ccataaaatttgagtacct---actatatgccaggcactggtaaaataaaATTTTCAGCTGCCTACTATGTGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53144043 70 + 80904711 caataaaatttgagtacct---actatatgccaggcactggtgaaataaaATTTGAAGCTGCCTACTATGTGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52709551 70 + 80997621 caataaaatttgagtacct---actatatgccaggcactggtgaaataaaATTTGAAGCTGCCTACTATGTGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47711984 70 + 74645514 CAATAAaatttgagtacct---actatatgccaggcactggtgaaataaaatttgaagctgCCTACTATGTGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9978911 70 - 75148670 caataaaatttgagtacct---actatatgccaggcactggtgaaataaaATTTGAAGCTGCCTACTATGTGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112855735 70 + 159171411 caataaaatttgagtacct---aatatatgccaagcactgggaaaataaaATTTTCAGCTACCTACTATGTAA i calJac3.chr5 C 0 I 2604 s canFam3.chr9 39401687 72 - 61074082 CAGTAAAATTTGAATATATTTGAATATATG-CAGGCACTGGGAAAATAAAATTTCCAGCTCTTCATTGTGTGA i canFam3.chr9 C 0 C 0 e mm10.chr11 99571053 744 + 122082543 I a score=2376501.000000 s hg38.chr17_JH159146v1_alt 163584 723 + 278131 -----AGTATTGAGATATTTAAACTTACAATTATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAACAA-----TAGTTGT----------------------------------------------------------------------ACT---------------TTATAAATTTATTTTGAATCAGAGAC-TTTTTTCTCCATTGATTAGATAAATCTGACTACTGTATTGAATTGAATGACCACTGATTTTCCAAAGAGCTCCTGC-AGTACTTGAAATTTTTTGAA-----GAGACTTAATTG-TTATGTATTTAAATATTAGCTGACACTATGGCTTTAAAATATACTTTGAGTTTTTAGCTTATTTTACTAAACATATAGTTGGCTATATGGTAAGGGCAAATTCTCATACagaattttctgtgtgacagattttttt-aaaagtgcactacacgtatcatgtcatttaattcttaccacagccctatgaggttggtattaaagctatcctctctttcatagctgaaggaaactgaggcatagagtggttaagtaagttgctcaaagtc-----------aatag-------------------------ctggtaagtgatggaattaaaatctgaaccaaggccacctgaccccagagtctgcattcttagt--cactatacATTAGTTTATAATTTCTCTATTATTGATTATTGCATTTTTCAAGAGAAAA--------------------------TATATAACTTGGTTTATttcaacctatctctgttgagcacctgctgtttgctttgtactgtgctaggagatttaaggcattcaaggacaagcaggacaT-GGTGTACTCT s panTro4.chr17 66282699 728 - 82630442 -----AGTATTGAGATATTTAAACTTACAATTATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAACAA-----TAGTTGT----------------------------------------------------------------------ACT---------------TTATAAATTTATTTTGAATCAGAGAC-TTTTTTCTCCATTGATTAGATAAATCTGACTACTGTATTGAGTTGAATGACCACTGATTTTCCAAAGAGCTCCTGC-AGTACTTGAAATTTTTTGAAATTAAGAGACTTAATTG-TTATGTATTTAAATATTAGCTGACACTATGGTTTTAAAATATACTTTGAGTTTTTAGCTTATTTTACTAAACATATAGTTGGCTATATGGTAAGGGCAAATTCTCATACagaattttctatgtgacagattttttt-aaaagtgcactacacgtatcatgtcatttaattcttaccacagccctatgaggttggtattaaagctatcctctctttcatagctgaaggaaactgaggcatagagcggttaagtaagttgctcaaagtc-----------aatag-------------------------ctggtaagtgatggaattaaaatctgaaccaaggccacctggccccggagtctgcattcttagt--cactatacATTAGTTTATAATTTCTCTATTATTGATTATTGCATTTTTCAAGAGAAAA--------------------------TATATAACTTGGTTTATttcaacctatctctgttgagcacctgctatttgctttgtactgtgctaggagatttaaggcattcaaggacaagcaggacaT-GGTGTACTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8306113 727 - 17838096 -----AATATTAAGATATTTAAACTTACAA-TATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAACAA-----TTGTTGT----------------------------------------------------------------------ACT---------------TTATAATTTTATTTTGAATCAGAGAC-TTTTTTCTCCATTGATTAGATAAATCTGACTACTGTATTGAATTAAATGACCACTGATTTTCCAAAGAGCTCCTGT-AGTACTTGAAATTTTTTGAAATTAAGAGACTTAATTG-TTATGTATTTAAATATTAGCTGACACTATGGTTTTAAAATATACTTTGAGTTTTTAGCTTATTTTACTAAACATATAGTTGGCTATACGGTAAGGGCAAATTCTCATACAGAATtttctgtgtaacagattttttt-aaaagcgcactacatgtatcatgtcatttaattcttaccacagccctatgaggttggtattaaagctatcatctctttcatagctgaaggaaactgaggcatagagcagttaagtaagttgctcaaagtc-----------aatag-------------------------ctggtaagtgatggaattaaaatctgaaccaaggccacctggctccagagtctgcattcttagt--cactatacATTAGTTTATAATCTCTCTATTATTGATTATTACATTTTTCAAGAGAAAA--------------------------TATACAACTTGGTTTATTTCAACCTATCTCTGTTGAGCACGTGCTATTTGCTTTGTACTGTGCTAGGAGATTTAAAGCATTCAAGGACAAGCAGGACAT-GGTGTACTCT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48043086 727 - 81552678 -----AATATTGAGATATTTAAACTTACAA-TATTCCAGTGTAAGCTTTGGAATTTTTGTCTTTGAAATTATTTTCTAACAA-----CAGTTGT----------------------------------------------------------------------ACT---------------TTATAATTTTATTTTGAATCAGAGAC-TTTTTTCTCCATTGATTAGATAAATCTGACTACTGTATTGAATTAAATGACCACTGATTTTCCAAAGAGCTCCTGT-AGTACTTGAAATATTTTGAAATTAAGAGACTTAATTG-TTATGTATTTAAATATTAGCTGACACTATGGTTTTAAAATATACTTTGAGTTTTTAGCTTATTTTACTAAACATATAGTTGGCTATATGGTAAGGGCAAATTCTCATACagaattttctgtgtaacagattttttt-taaagtgcactacatgtatcatgtcatttaattcttaccacagccctatgaggttagtattaaagctatcctctctttcatagctgaaggaaactgaggcatagagcagttaagtaacttgctcaaagtc-----------aatag-------------------------ctagtaagtggcggaattaaaatctgaaccaaggccacctgcctccagagtctacgttcttagt--cactatacCTTAGTTTATAATTTCTCTATTATTGATTATTACATTTTTCAAGAGAAAA--------------------------TATATAACTTGGTTTATTTCAACCTGTCTCTGTTGAGCACCTGCTATTTGCTTTGTACTGTGCTAGGAGATTTAAGGCATTCAAGGAGAAGCAGGACAT-GGCGTACTCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53144113 728 + 80904711 -----AATATTGAGATATTTAAACTTGTGATTATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAGCAA-----TAGTTGT----------------------------------------------------------------------ACT---------------TTACAATTTTATTTTGAATCAGAGAC-TTTTTTCTCAATTGATTACATAAATCCAACTCCTGCATTGAATTAAGTAATCACTGTTTTTCCAAAGAACTCCTGT-AGTACTCAAAATTTTTTGAAATTAAGAGACTTAATTG-TTATATATTTAAATATTAGCTGACACTAGGG-TTTAAAATATACTTTGAGTTTTTAACTTATTTTACTAAACATATAGTTGACTATATGaaaagagcaaactctcatacagaattttctgtgtaacagattttttaaaaaagtgcattacatgcatcatgtcatttaattcttaccacagccctatgaggctggtattaaagctatcctctcttttatacctaaaggaaactgaggcatagagcagttaagtaagttgctcaaggtc-----------aatag-------------------------ctggtaagtggtggaattaaaatctgaaccaaggccatctggctccatagtctatgttcttagt--cactatacATTAATCTATAATCTCTCTATTATTGATTATTACATTTTTCAAGAGAAAA--------------------------TACATAACTTGGTTTATttcaaccaatctctgttgagcacctggtatttgctttgtactgtgctaggagactgaggacattcaaggacaagcaggacat-ggtgtaccct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52709621 728 + 80997621 -----AATATTGAGATATTTAAACTTGTGATTATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAGCAA-----TAGTTGT----------------------------------------------------------------------ACT---------------TTACAATTTTATTTTGAATCAGAGAC-TTTTTTCTCAATTGATTACATAAATCCAACTCCTGCATTGAATTAAGTAACCACTGTTTTTCCAAAGAACTCCTGT-AGTACTCAAAATTTTTTGAAATTAAGAGACTTAATTG-TTATATATTTAAATATTAGCTGACACTAGGG-TTTAAAATATACTTTGAGTTTTTAACTTATTTTACTAAACATATAGTTGACTATATGAAAAGAGCAAACTCTCATACagaattttctgtgtaacagatttttttaaaaagcgcattacatgcatcatgtcatttaattcttaccacagccctatgaggctggtattaaagctatcctctcttttatacctaaaggaaactgaggcatagagcagttaagtaagttgctcaaggtc-----------aatag-------------------------ctggtaagtggtggaattaaaatctgaaccaaggccatctggctccatagtctatgttcttagt--cactatacATTAATCTATAATCTCTCTATTATTGATTATTACATTTTTCAAGAGAAAA--------------------------TACATAACTTGGTTTATttcaaccaatctctgttgagcacctggtatttgctttgtactgtgctaggagactgaggacattcaaggacaagcaggacaT-GGTGTACCCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47712054 728 + 74645514 -----AATATTGAGATATTTAAACTTATAATTATTCTAGAGTAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAGCAA-----TAGTTGt----------------------------------------------------------------------act---------------ttacaattttattttgaatcagAGAC-TTTTTTCTCAATTGATTACATAAATCCGACTCCTGCATTGAATTAAGTAATCACTGTTTTTCCAAAGAACTCCTGT-AGTActcaaaattttttgaaattaagagACTTAATtg-ttatgtatttaaatattagcTGACACTAGGg-tttaaaatatactttgagtttttaacttattttactaAACATATAGTTGACTATATGAAAAGAGCAAACTCTCATACAGAATTTTCTGtgtaacagattttttaaaaaagtgcattACATGCATCATGTCATTTAATTCTTACCACAGCCCTATGAGGCTGGTATTAAAGCTATCCTCTCTTTTATACctaaaggaaactgaggcatagagcaGTTAAGTAAGTTGCTCAAGGTC-----------AATAG-------------------------CTGGTAAGTGGTGGAATTAAAATCTGAACCAAGGCCATCTGGCTCCATAGTCTATGTTCTTAGT--CACTATACATTAATCTATAATCTCTCTATTATtgattattacatttttcaagagaaaa--------------------------tacATAACTTGGTTTATTTCAACCAATCTCTGTTGAGCACCTGGTATTTGCTTTGTACTGTGCTAGGAGACTGAGGACATTCAAGGACAAGCAGGACAT-GGTGTACCCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9978981 729 - 75148670 -----AATATTGAGATATTTAAACTTATAATTATTCTAGAGCAAGCTTTGGAATTTTCATCCTTGGAATTATTTTCTAGCAA-----TAGTTGT----------------------------------------------------------------------ACT---------------TTACAATTTTATTTTGAATCAGAGAC-TTTTTTCTCAATTGATTAGATAAATCTGACTCCTGCATTGAATTAAGTAACCACTGGTTTTCCAAAGAACTCCTGT-AGTACTCAAAA-TTTTTGAAATTAAGAGACTTAATTG-TTATATACTTAAATATTAGCTGACACTAGGG-TTTAAAATATACTTTGAGTTTTTAACTTATTTTACTAAACATATAGTTGACTATATGaaaagagcaaactctcatacagaattttctgtgtaacagattttttaaaaaagtgcattgcatgcatcatgtcatttaattcttaccacagccctatgaggctggtattaaagctgtcctctcttttatacctaaaggaaactgaggcatagagcagttaagtacgttgctcaaggtc-----------aatag-------------------------ctggtaagtggtggaattaaaatctgaaccaaggccatctggctccatagtctctgttcttagtcacactatacATTAATCTATAATCTCTCTATTATTGATTATTACGTTTTTCAAGAGAAAA--------------------------TACATAACTTGGTTTATttcacccaatctctgttgagcacctggtatttgctgtgtactgtgctaggagacttaggacattcaaggacaagcaggacaT-GGTGTACCCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112858409 721 + 159171411 -----AATATTGAGATATTTAAACTTATAATTGTCTTATAGTAAGCTTTGTAATTTTCATCCTTGGAATTATTTCCTAACAA-----TAATTGT----------------------------------------------------------------------ACT---------------TTACAA-TTTAGTTTGAATCAGAGATGTTTTTTCTCCATTGAGTAGATAAATCTGACTACTGCATTGAATCAAATAACCATTGGTTTTCCAGAGAGCTCCTGT-GGTATTTGAAATTTCTTGAAATTAAGAGACTTAATTG-TTATGTGTTTAAATATTAGCTGACACTACGGTTTTAAAATATACTTTGAG-TTTCAGCTTATTTTATTAAACATATAGTTGGCTACATGGTAagagcaaactctcatgcagaattttccgtgtaatagatttttta-aaaagtgcattacatgtattatgtcatttaattcttacaagagccctaggaggttggtattaaagttatcctctcttttacagtgaaaggaaactgaggcatagagcaggtaagtaagttgctcaaggtc-----------aat-g-------------------------ctggtaaatggtggaattaagatctgaaccaagggcaactggccctagagtctatgttcttaat--cactacacATTAGTCTATAA----TCTATTATTGATTACTGCATTATTCAAGAGAAAA--------------------------TATATAATTTGGtttatctcaaccaatctctgttgagcacctgctatttgctttgtactgtgcttggagactaagggcattcaaggataa-caggacac-ggtgtactct i calJac3.chr5 I 2604 C 0 s canFam3.chr9 39401759 864 - 61074082 AATTGAAGATTGAGATAGTTAAA--TACAATTATTCTAGAGTAAAAGTCGGGCTTTTTATCCTTGGAATTATTTGATAACAAATAATTATTTGTTATCAAATCAAAAACATCTAATTCAAAATAAAATTATAGCCATTGTTACCAAATAATTAGTTACCAAATAACTATTGTTACCAAATAGttataattttattttgaattaaatat---ttttGTCCATTGGTTAGACAAATCTGATTACTGGATTGAATCAAATAGCTACTGGATTTCCAAACAGCTCCTGTAAGTAGTTGaaatttttaaaaattaagataattaaatgtttatgtatttaaatattaGCTGACATGATAACTTTAAAACATATCTTCAGTTGTTAGTTTACTAT----AACATACAGCTGATTTTATGATAACAGCAAAGGCTTAC-TAGTATTTAAT---TGATAAGgttct-------gtgctttacatgtattatgtcatttaattcttacaacagtccaa--agcttggtattgaaggtatcctctgttttacagatgagggaaactgagacacagagag----aataagttgttcagggtcagccactggtaaatagtggagtgggatttgaaccccagccactggtaaatagtggagttgggatttgaaccccagctctctggctccaaggtctgtgttcttaat--cagtgtatactaATCCATAATCACTCCATTATTGATTATTATATTTTTCAAGAGAAAATTAGAAATTTTCAAATTTCAAATAATTGAATTATTTGGCTTATttcagccaatctttgttgagcccctgctatttgctttgcactgtactaggggatttaggggacttagggatgggcaggacaCAGGTGTACTTt i canFam3.chr9 C 0 I 912 e mm10.chr11 99571053 744 + 122082543 I a score=1278203.000000 s hg38.chr17_JH159146v1_alt 164307 438 + 278131 TAAatatctgagaatttactgggattcgcagggtacacagggcttgaatgcaaggcagaggagtagg-aaggcattccagctatagggaacagcagcagtaaatgcat---agaagtggaaaagaacaaatggttgttaggaagccatgaatagtgcgctgtgtctagagaacaattgtgtgagATAAAAGCAAGATGTAGAGTCTTGAC-CCCAGGATGAGGTGTTTGAACTTGAATTAAGTAGACCCATGGAGAACCACTGGTATATATTTTTCTAAGGCA-GGAAGTTACCTctttaactccgtcatttgtaaatatggctaatgttactatcacattgataggatgtttaaagaataaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcaataaatgatTCTAATAGGTGTGATTGT s panTro4.chr17 66283427 438 - 82630442 TAAatatctgagaatttactgggattcacagggtacacagggcttgaatgcaaggcagaggagtagg-aaggcattccagctgtagggaacagcagcagtaaatgcat---agaagtggaaaagaacaaatggttgttaggaagccatgaatagtgcactgtgtctagagaacaattgtgtgagATAAAAGCAAGATGTAGAGTCTTGAC-CCCAGGATGAGGTGTTTGAACTTGAATTAAGTAGACCCATGGAGAACCACTGGTATATATTTTTCTAAGGCA-GGAAGTTACCTctttaactccttcatttgtaaatatggctaatgttactatcacattgataggatgtttaaagaataaattaaagaaaccattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcaataaatgatTCTAATAGGTGTGATTGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8306840 442 - 17838096 TAAATATCTTAGAATTTACTGGGATTCGCAGGGTACACCGGGCTTGAATGCAAGGCAGAGGAGTAGG-AAGGCATTCCAGCTGTAGGGAAGAGCAGCAGTAAATGCATAGAAGAAGTGGAAAAGAAAAAATGGTTGTTAGGAAGCCATGAATAGTGCGCGGTGTCTAGAGAACAATTGTGTGAGATAAAAGCAAGATATAGAGTCTTGAC-CCCAAGATGAGGAGTCTGAACTTGAATTAAGTAGACCCATGGAGAACCACTGGTATATATTTTTCTAAGGCAGGGAAGTTACCTctttaactccttcatttgtaaatatggccaatattgctatcacattgataggatgtttaaagagtaaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtccttaataaatgatTCTAATAGGTGTGATTGT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48043813 442 - 81552678 TAAATATCTTAGAATTTACTGGGATTCCCAGGGTACACAGGGCTTGAATGCAAGGCAGAGGACTAGG-AAGGCATTCCAGCTGTAGGAAACAGTAGCAGTAAATGCATAGAAGAAGTGGAAAAGAAAAAATGGTTGTTAGGAAGCCATGAATAGTGCACTGCGTCTAGAGAACAATTGTGTGAGATAAAAGCAAGATATAGAATCTTGAC-CCCAGGATGAGGAGTTTGAACTTGAATTAAGTAGACCCATGGAGAACCACTGGTATATATTTTTCTAAGGCAGGAAAGTTACCTctttaactccttcatttgtaaatatggctaatgttactatcacattgataggatgtttaaagaataaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcaataaatgatTCTGATAGGTATGATTGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53144841 440 + 80904711 taaatatcatagaatttactgggattctcagggtacacagggcttgaatgcaaggcagaggagtaggaaaggcattccagctgtaaggaacagcagcagtaaatgcatagaagaagcggaaaagaacaaatggttgttaggaagccgtgaatagtgcagtgtgtctagagaaccattgtgtgagataaaagc---aagtagagTCTTGAC-CCCAGGATGAGGAGTTTGAACTTGAATTAAGGAGACCCATGGAGAACCACTGGTATATATTTTTctaaggcagggaacttacttctttaactccttcatttgtaaatatggcgaatgttactatcacattgataggatgtttaaagaataaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcagtaaatgatCCTAATAGGTGTAATGGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52710349 440 + 80997621 TAAATATCATAGAATTTActgggattctcagggtacacagggcttgaatgcaaggcagaggagtaggaaaggcattccagctgtaaggaacagcagcagtaaatgcatagaagaagcggaaaagaacaaatggttgttaggaagccgtgaatagtgcggtgtgtctagagaaccattgtgtgagataaaagc---aagtagagTCTTGAC-CCCAGGATGAGGAGTTTGAACTTGAATTAAGGAGACCCATGGAGAACGACTGGTATATATTTTTctaaggcagggaacttacctctttaactccttcatttgtaaatatggctaatgttactatcacattgataggatgtttaaagaataaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcagtaaatgatCCTAATAGGTGTAATGGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47712782 443 + 74645514 TAAATATCATAGAATTTACTGGGATTCTCAGGGTACACAGGGCTTGAATGCAAGGCAGAGGAGTAGGAAAGGCATTCCAGCTGTAAGGAACAGCAGCAGTAAATGCATAGAAGAAGCGGAAAAGAACAAATGGTTGTTAGGAAGCCGTGAATAGTGCAGTGTGTCTAGAGAACCATTGTGTGAGATAAAAGCAAGAAGTAGAGTCTTGAC-CCCAGGATGAGGAGTTTGAACTTGAATTAAGTAGACCCATGGAGAACGActggtatatatttttctaaggCAGGGAACTTACCTCTTTAACTCCTTCATTTGTAAATATGGCTAATGTTACTATCACATTGATAGGatgtttaaagaataaattaaagaaagCATTAAAATGTGCAatgcagtgcctggaacatagtaagtcCTCAGTAAATGATCCTAATAGGTGTGATGGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9979710 443 - 75148670 TAAATATCATAGAATTTActgggattctcagggtacacagggcttgaatgcaaggcagaggagtaggaaaggcattccagctgtaaggaacagcagcagtaaatgcataggagacgtggaaaagaacaaatggttgttaggaagccgtgaatagtgcagtgtgtctagagaaccattgtgtgagaTAAAAGCAAGATATAGAGTCTTGAC-CCCAGGATGAGGAGTTTGAACTTGAATTAAGTAGACCCATGGAGAACCACTGGTATATATTTTTCTAAGGCAGGGAAGTTACCTctttaactccttcatttgtaaatctggcgaatgttactatcacattgataggatgtttaaagaataaattaaagaaagcattaaaatgtgcaatgcagtgcctggaacatagtaagtcctcagtaaatgatCCTAATAGGTGTGATGGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112859130 418 + 159171411 taactatcttagaatct-------------------gcagggcttgaatgcaa-acagaggagtaggaaaggcattccagcggtagggaacagcagcagtaaatgcat---agacgtggaaaacaacaaattgttgttaggaagccatgactagtgcactgtgtctagagaacaattgtgtgagATAAAAGCAAGATGCAG--TGTTGACTCCCAGGATGTGGAGTTTGAACTTAAATTAGGTAGACTCATCGAGAACCACGGGTATGTATTTTTCCAAAGTG-GAAAGTTACTTctttaactccctcgtttgtaaatatggctaaagttactgtcacatcgataggatgcttaaaggataaattaaacaaagcattaaaatgtgtaaggcagtgtctggaacagagtgagtggtcagtaaatgatTCTAATAGGTGTGGTGGT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39402623 912 - 61074082 I e mm10.chr11 99571053 744 + 122082543 I a score=1674043.000000 s hg38.chr17_JH159146v1_alt 164745 543 + 278131 TGTTACTAAATAAGCAGAGGGAGGCTGGAG--CTTTTTTCTTCCCCGTCATTTTCAGGTATTCTTTCTCTCCGACGATAGGGAATCTAGGGCTAAATTTGGGAGTTTAGCTTTTAGGTTTCCCACGCCTGGAAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGACCCCGCCTCCAAAAAGCAAACTG-TGCCCCTCGACCTTGCTTTGCTGGAACCCTGTGAGATCACTGGTAAGCAGTGTGCACTCCTCATGTCCCCTCTACCACGTTGCCTTTTTCAGGAGGCAGTCATCACAAACGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAATGCTCTAGCTGCTTGAGCGTGACTTCTTCCTCAT----TCTTTCTTATTACTATCTGTGATTTACAT-GAAGTGACACAATTTATATTTTGATACAGTTAAAAATTTCCTCTGTAGAATAAGATGTATTGCAACAGCTTGTAATTATAGCCGGTCAGTTTTCCTGAGTGGAAATTTGACATCTGAGTCCATTG----GGATG s panTro4.chr17 66283865 543 - 82630442 TGTTACTAAATAAGCAGAGGGAGGCTGGAG--CTTTTTTCTTCCCCGTCATTTTCAGGTATTCTTTCTCTCCGACGATAGGGAATCTAGGGCTAAATTTGGGAGTTTAGCTTTTAGGTTTCCCACGCCTGGAAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGACCCCGCCTCCACAAAGGAAACTG-TGCCCCTCGACCTTGCTTTGCTGGAACCCTGTGAGATCACTGGGAAGCAGTGTGCACTCCTCATGTCCCCTCTACCACGTTGCCTTTTTCAGGAGGCAGTCATCACAAACGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAATGCTCTAGCTGCTTGAGCGTGACTTCTTCCTCAT----TCTTTCTCATTACTATCTGTGATTTACAT-GAAGTGACACAATTTATATTTTGATACAGTTAAAAATTTCCTCTGTAGAATAAGATGTATTGCAACAGCTTGTAATTATAGCCGGTCAGTTTTCCTGAGTGGAAATTTGACATCTGAGTCCATTG----GGATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8307282 546 - 17838096 TGTTACTAAATAAGCAGAGGGAGGCTGGAG---TTTTTTCTTCCCCTTCATTTTCAGCTATTCTTTCTCTCCAACAATAGGGAATCTAGGGTTAAATTTGGGAGTTTAGCTTTTAGGTTTCCCATGCCTGGAAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGCAACCAGTGAAGACCCCGCCTCCACAAAGGAAACTG-TGCCCCTCTACCTTGCTTTGCTGGAACCCTGTAAGATCACTGGGAAGCAGTGTGCGCTCCTCATGTCCCCTCTACCACGTTGCCTTTTTCAGGAGGCAGTCATCACAAATGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAATGCTCTATCTGCTTGAGCATGACCTCTTCCTCATTCTGTCTTTCTCATTACTATCTGTGATTTACAT-GAAGTGATACAATTTATATTTTGGTACAGTTAGTAATTTCCTCCATAGAATAAGATGTATTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAGTGGAAATTTGACATCTGAGTCCATTG----GGATG i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48044255 546 - 81552678 TGTTACTAAATAAGAAGACGGAGGCCGGAG--CTTATTTTTTCTCTGTCACGTTCAGGTATTCTTTCTCTCCAACAATAGGGAATCTAGGGCTAAGTTTGGGAGTTTAGCTTTTAGGTTTCCCATGCCTGGAAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGATCCCGCCTCCACAAAGGAAACTG-TGCCCCTCGACCTTGCTTTGCTGGAG-CCTGTGAGATCACTGGGAAGCAGCGTGCGCTCCTCATGTTCCCTCTACCACGTTGCCTTTTTCAGGAGGCAGTCATCACAAATGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAATGCTCTATCTGCTTGAGTGTGACTTCTTCCTCATTCTGTCTTTCTCATTACTATCTGTGATTTACAT-GAAGTGATACAATTTATATTTTGATACAGTTAGAAATTTCCTCTGTAGAATAAGATGTATCGCAACAGCTTGTAACCACAGCCGGTCAGTTTTCCTGAGTGGAAATTTGACATCTGAGTCCATTG----GGATG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53145281 546 + 80904711 TGTTACTAAATAAGCAGAGGGAGGCTGGAG---CTTTTTTTTCCCTGACATTTTCAGGTATTCTTTCTCTCCAACAATAGGGCATCTAGGGCTAAATTTGGGAGTTTAGTTTTTAGGTTTCTCAGGCCTGGGAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGACCCCACCTCCACAAAGGGCACTG-TGCCCCTCGACCTTGCTTTGCTGGAGCCCTGTGAGATCACTGGGAAGCAGTGTGTGCTCCTCATGTCCTCTCTACCACGTTGCCTTTTTCAGGAGGCAGCCATCACAAATGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAGTGCTCTATCTGCTTGAGCGTAACTTCTTCCTCATTCCGTCTTTCTCATCACTCTCTGTGATTTACAT-GAAGTGTTACAATTTATATTTTGATACAGTTAGGAATTTCCTCTGTAGAATAAGATGTATTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAGTGGAAATTTGACTTCTGAGTCCATTG----GGATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52710789 546 + 80997621 TGTTACTAAATAAGCAGAGGGAGGCTGGAG---CTTTTTTTTCCCTGACATTTTCAGGTATTCTTTCTCTCCAACAATAGGGCATCTAGGGCTAAATTTGGGAGTTTAGTTTTTAGGTTTCTCAGGCCTGGGAAGCCTGCCTGTTGATAGTCTTCATTGTAGTTTTTGTAACCAGTGAAGACCTCACCTCCACAAAGGGCACTG-TGCCCCTCGACCTTGCTTTGCTGGAGCCCTGTGAGATCACTGGGAAGCAGTGTGTGCTCCTCATGTCCTCTCTACCACGTTGCCTTTTTCAGGAGGCAGCCATCACAAATGCCTAGCAGGATTTACTACTCAGAGGGGACTGAAGAAGTGCTCTATCTGCTTGAGCGTAACTTCTTCCTCATTCCGTCTTTCTCATCACTCTCTGTGATTTACAT-GAAGTGTTACAATTTATATTTTGATACAGTTAGGAATTTCCTCTGTAGAATAAGATGTATTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAGTGGAAATTTGACTTCTGAGTCCATTG----GGATG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47713225 546 + 74645514 TGTTACTAAATAAGCAGAGGGAGGCTGGag---cttttttttccctgacaTTTTCAGGTATTCTTTCTCTCCAACAATAGGGCATCTAGGGCTAAATTTGGGAGTTTAGTTTTTAGGTTTCTCAGGCCTGGGAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGACCCCACCTCCACAAAGGGCACTG-TGCCCCTCGACCTTGCTTTGCTGGAGCCCTGTGAGATCACTGGGAAGTAGTGTGTGCTCCTCATGTCCTCTCTACCACGTTGCCTTTTTCAGGAGGCAGCCATCACAAATGCCTAGCAGGATTTATTACTCAGAGGGGACTAAAGAAGTGCTCTATCTGCTTGAGCGTaacttcttcctcattctgtctTTCTGATCACTCTCTGTGATTTACAT-GAAGTGATACAATTTATATTCTGATACAGTTAGGAATTTCCTCTGTAGAATAAGATGTATTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAGTGGAAATTTGACTTCTGAGTTCATTG----GGATG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9980153 546 - 75148670 TGTTACTAAATAAGCAGAGGGAGGCTGGAG---CTTTTTTTTCCCTGACATTTTCAGGTATTCTTTCTCTCCAACAATAGGGCATCTAGGGCTAAATATGGGAGTTTAGTTTTTAGATTTCTCACGCCTGGGAAGCCTGCCTGTTGATAGTCTTCATTATAGTTTTTGTAACCAGTGAAGACCCCACCTCCATAAAGGACACTG-TGCCCCTCGACCTTGCTTTGCTGGAGCCCTGTGAGATCACTGGGAAGCAGTGTGTGCTCATCATGTCCCCTCTACCACGTTGCCTTTTTCAGGAGGCAGCCATCACAAATGCCTAGCAGGATTTATTACTCAGAGGGGACTGAAGAAGTGCTCTATCTGCTTGAGCGTAACTTCTTCCTCATTCCGTCTTTCTCATAACTCTCTGTGATTTACAT-GAAGTGATACAATTTATATTTTGATACAGTTAGAAATTTCCTCTGTAGAATAAGATGTGTTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAGTGGAAATTTGACTTCTGAGTCCATTG----GGATG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112859548 548 + 159171411 TGTTAAAAAATAAGCAGAGGGAAGCTGGAGTCTTTTTTTTCCCCCTATCATTTTCAGGTTTTCTTTCTTTCCAACAATGGGGCATGGAGGGCTACATTTGGGAGTTTAGCTTTTAAGTTTCTCATGCCTGGGAAGCCTGTCTGTTGATAGTCTTCTTTACAGTTTTCGTAACCAGTGGAGACTCCACCCCCACAAAGGAAGCAG-CA-TCCTCAACCTTGCTTTGCTGGAGCCCTGTGAGATCACTGGGAAGCAGTGCGAGCTTATCCCGTCCCCTCTGCCACATTGCCTTTTTAAGGAGGCAGTCATCACAAATGCCCAGCAGGATTTATTACTCAGAGGGGACTGAAGAAATGCTCTATCTGCTTGAGCGTGACTTCTTCCTCATTCTGTCTTTCTCATTAGTATCTGTGATTTACAT-GAAGTAATAACATTTACATTTCAATACAGTTAGAAATTTTCTCTGTAGAATAAGATGCACTGCAACAGCTTGTAATCATAGCTGGTCAGTTTTCCTGAATGGAAATTTGACGTCTGAGTCTGTTG----GGATG i calJac3.chr5 C 0 C 0 s mm10.chr11 99571797 450 + 122082543 TGTTGTTGAACAGGAGTGGGGGAACCGGGG---CTCTTTTAT----------------TATTCTTTCTGTCC-CCTATGGGGAGCCTGAGG-TAAAGTTGAGGTTTTAGCTCCGTGGTGTCTCACTTGTGGAAGGTCT-----TTATCAGTCTTCATCCAAACCTTTCAAGTCAGTGGAGGCCCTGCCTTCTCCAGAAGGGCTGATGTCTCTTTGCCTCGCCCTGCTGGAGTCCTGTG-------------------------------------------ATGTTACCTATGTGTGGACAGGTTAACCAGAAAGAAGCAGCTGGCTCCCATATT--------------------CTCTGTGAGCTTGACTACCACTTCTCTGTCCCTCGG---ATGTCATTAACCCTTACGACTTATATAGAAAGGATGT------CATTTCAATACACTTAGGCAATGTAGTTAGGGTATGAGAGAGGAGGGAACTGTTCATATTC-TAGTTGGTCAG------TGAGAGGGAATTTGGCTTCTTGATCGGGTGTGAAGAAAG i mm10.chr11 I 744 C 0 e canFam3.chr9 39402623 912 - 61074082 I a score=256590.000000 s hg38.chr17_JH159146v1_alt 165288 71 + 278131 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TG-AGATAAACG------------TTCCCACTAATATT--GTGTGTTTTGAT------------TTTCGAG s panTro4.chr17 66284408 71 - 82630442 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TG-AGAAAAACG------------TTCCCACTAATATT--GTGTGTTTTGAT------------TTTCGAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8307828 73 - 17838096 AAAAGAACAGAAAG--GAGGACGACAACA-----TG-AGAAAAACC------------TTCCCAAAAATATTAAGTGTGTTTTGAT------------TTTCGAG i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48044801 73 - 81552678 AAACGAGCACAAAG--GAGGAAGATAACA-----TG-AGAAAAACG------------TTCCCACTAATATTAAGTGTGTTTTGAT------------TTTTGAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53145827 73 + 80904711 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TA-AGGAAAACG------------TTCCCACAAATATTAAGCGTGTTTTGAT------------TTTTGAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52711335 73 + 80997621 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TG-AGGAAAACG------------TTCCCACAAATATTAAGCGTGTTTTGAT------------TTTTGAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47713771 73 + 74645514 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TG-AGGAAAACG------------TTCCCACAAATATTAAGcgtgttttgat------------ttttgag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9980699 73 - 75148670 AAAAGAGCAGAAAG--GAGGAAGATAACA-----TG-AGGAAAACA------------TTCCCACAAATATTAAACGTGTTTTGAT------------TTTTGAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112860096 73 + 159171411 AAAAGAGCAGAAAG--GAGGAAGATAACA-----GG-AGAAAAAGT------------TTCCCACAAATATTAACAGTGTTTTGAT------------TTTCGAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99572247 102 + 122082543 AAAAGAGCGGAAAG--GAAGGAAGGAACACTGTGCG-AGGAGAACGTTCCAGAGAACATTCCCACGAGTACTAGGAGTGGTGTGATATTTtttttttctttggag i mm10.chr11 C 0 I 158 s canFam3.chr9 39403535 76 - 61074082 AAAAGAACAGAATGGTGAGGAACATCACA-----TGTGGAAAAAAA------------TTCCTACAAATATTAAGAGTGTTTTGAT------------TTTTGAG i canFam3.chr9 I 912 C 0 a score=263490.000000 s hg38.chr17_JH159146v1_alt 165359 92 + 278131 AGTACACCACGCtcagtgctggaggtgaagatttggaaggctccaacatatagatgaaaactgtgcttactatgaagcgcttggactgagaa s panTro4.chr17 66284479 92 - 82630442 AGTACACCACGCtcagtgctggaggtgaagatttggaaggctccaacatatagatgaaaattgtgcttactatgaagcgcttggactgagaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8307901 92 - 17838096 AGTACACCACGCTTAGTActggaggtaaagatttggaaggctccaacatatagatgaaaattgtgcttactatgaagcacttagactgagaa i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48044874 92 - 81552678 AGTACACCACGCTCAGTGCTGGAGGTGAAGATTTGGAAGGCTCCAACATACAGATGAAAATTGTGCTTACTATGAAGCGCTTGGACTGAGAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53145900 92 + 80904711 AGTACACGACGCTCAGTGCTAGAGGTGAAGATTTGGAAGGCTTCAACACACAGATGAAAATTTTGCTTACTATGAAGCGCTTGAACTGAGAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52711408 92 + 80997621 AGTACACGACGCTCAGTGCTAGAGGTGAAGATTTGGAAGGCTTCAACACACAGATGAAAATTTTGCTTACTATGAAGCGCTTGAACTGAGAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47713844 92 + 74645514 agtACACAACGCTCAGTGCTGGAGGTGAAGATTTGGAAGGCTTCAACACACAGATGAAAATTTTGCTTACTATGAAGCGCTTGAACTGAGAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9980772 92 - 75148670 AGTACACGACGCTCAGTGCTGGAGGTGAAGATTTGGAAGGCTTCAACACACAGATGAAAATTTTGCTTACTATGAAGCGCTTGAACTGAGAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112860169 92 + 159171411 AGTACATCATGCTCACAGCTGGAAGTGAAGATTTGGAAGGCTTCAATATCCAGATGAATATTTTGCTTACTATGAAGCACTTGGACTGAGAA i calJac3.chr5 C 0 I 316 s canFam3.chr9 39403611 24 - 61074082 -----------------------AGTGCAGATGTG---------------------------------------------TTAGATAAAGAA i canFam3.chr9 C 0 C 0 e mm10.chr11 99572349 158 + 122082543 I a score=118231.000000 s hg38.chr17_JH159146v1_alt 165451 40 + 278131 tgagatgaccaTTTTTATGTGATCCATTTTATTCAAATGG s panTro4.chr17 66284571 40 - 82630442 tgagatgaccaTTTTTATGTGATCCATTTTATTCAAATGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8307993 40 - 17838096 tgagatgaccGTTTTTGTGTGATCCATTTTATTCAAATGG i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48044966 40 - 81552678 TGAGATGATCATTTTTATGTGATCCATTTTATTCAAATGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53145992 40 + 80904711 TGAGATGATCATTTTTGTGTGATTCATTTTATTCTAATGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52711500 40 + 80997621 TGAGATGATCATTTTTGTGTGATTCATTTTATTCTAATGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47713936 40 + 74645514 TGAGATGATCATTTTTGTGTGATTCATTTTATTCTAATGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9980864 40 - 75148670 TGAGATGATCATTTTTGTGTGATTCATTTTATTCAAATGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112860577 40 + 159171411 TGAGATGATCACTTTTATGTAATCCATTTTATTCAAATGG i calJac3.chr5 I 316 C 0 s canFam3.chr9 39403635 19 - 61074082 -GGAGCAACCAC--------------------CCAAATGG i canFam3.chr9 C 0 C 0 e mm10.chr11 99572349 158 + 122082543 I a score=501173.000000 s hg38.chr17_JH159146v1_alt 165491 152 + 278131 AATACAACATCACCCTGAGCAAT-GCTCTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTATCCTCTCCATAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACACTTGAGTGGAGAAGAGGaatagaaaataaaat s panTro4.chr17 66284611 152 - 82630442 AATACAACATCACCCTGAGCAAT-GCTCTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTATCCTCTCCATAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACACTTGAGTGGAGAAGAGGaatagaaaataaaat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8308033 143 - 17838096 AATACAACATCACCCTGAGCAAT-GCTCTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACT---------ATGCTATCCTCTCCATAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACACTTGAATGGAGAAGAGACATAGAAaataaaat i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48045006 152 - 81552678 AATACAACATCACCCTGAGCAAT-GCTCTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTGTCCTCTCCATAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACACTTGAGTGGAGAAGAGGaatagaaaataaaat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53146032 152 + 80904711 AATACAACATCACCCTAAGCAAT-GCTTTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTATTCTCTCCACAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACGTTTGAATGGAGAAGAGGaatagaaaataaaat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52711540 152 + 80997621 AATACAACATCACCCTAAGCAAT-GCTTTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTATTCTCTCCACAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACGTTTGAATGGAGAAGAGGAATAGAAaataaaat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47713976 152 + 74645514 AATACAACATCACCCTAAGCAAt-gcttttccta-tttttaaagctattt----tcc--ACACATGACTATCTGGCTCATGCTATTCTCTCCACAGCCAAAAGGG----------CTTTCTGCTCCTGAAGACATACGTTTGAATGGAGAagaggaatagaaaataaaat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9980904 145 - 75148670 AATACAACATCACCCTGAGCAAT-GCTCTTCCTA-TTTTTAAAGCTATTT----TCC--ACACATGACTATCTGGCTCATGCTATTCTCTTCACAGCCAAAAGG-----------------GCTCCTGAAGACATACATTTGAATGGAGAAGAGGaatagaaaataaaat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112860617 151 + 159171411 GATACAACATTACCCTGAGCAAT-GCTCTTCCCA-TTTTTAAGGCTATTT----TCC--ACACATGAGTATCTGGCTGTTGTTGTCCTCTCCATAGCCAAAAGG-----------TTTTCTGCTCCTGAAGACATACACTTGAATGGAGAAGAGGaatagaaaataaaat i calJac3.chr5 C 0 C 0 s mm10.chr11 99572507 162 + 122082543 AATGAGAAATTACTCGAGTTAATCTCCTTTCTTG-TTGGCACAGCTATTTCTCACCC--ACACCCGAGTGTCTGGTGTCTTCTGTCCTCACAATACTCTAAAGAGTTGGGTTTTTTTTCCTCCTCCAAAAGACATAGATTTGAATGAAG--GAAGCAGGGAAAATAA--- i mm10.chr11 I 158 C 0 s canFam3.chr9 39403654 124 - 61074082 AGTAAAACATCATCCTGGGCAGC-CTTCTTCCTAGTTTTCTCAGCTTTAT----TCCTGACTCTTGTGTATCTGGGCATTGTTAGTCCCCTAACAGTCAACAGGG----------TTTTGTGCTT-------------------------------ACCCAAGATAAAAT i canFam3.chr9 C 0 C 0 a score=433967.000000 s hg38.chr17_JH159146v1_alt 165643 151 + 278131 ttctggagcacctactatatgccaggcatattactattaataaccttatttgttattcacagcaatactgtgacatattagaacccccatttgatatagaagacaaaaactgagcttctgagaagacttgtctaaggtc-----acagtcagtgag s panTro4.chr17 66284763 151 - 82630442 ttcttgagcacctactatatgccaggcatattactattaataacctcatttgttattcacagcaatactgtgacatattagaacccccatttgatatacaagacaaaaactgagcttctgagaagacttgtctaaggtc-----acagtcagttag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8308176 151 - 17838096 ttgttgagcacctgctatatgccaggcatattactattaataaccttatttgttattcacagcaatactgtgacatattagaacccccatttgatatacaagacaaaaactgagcttctgagaagacttgtctaaggtc-----acagtcagttag i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48045158 148 - 81552678 ttcttgagcacctactatatgccaggcatattactattaataaccttatttgttattcacagcaatactgtgacatattagaacccccatttgatatacaagacaaaaactgagcttctg---agatttgtctacggtc-----atagtcagttaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53146184 149 + 80904711 tttttgagcacctactatatgccaggcatattactattaataaccttatttattattcacagcaatactgtgacatattagaacccccatttgatatacaatac-aaaactgagcttctgagaatatttgtctaaggtc-----acagtgagtga- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52711692 149 + 80997621 tttttgagcacctactatatgccaggcatattactattaataaccttatttattattcatagcaatactgtgacatattagaacccccatttgatatacaatac-aaaactgagcttctgagaatatttgtctaaggtc-----acagtgagtga- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47714128 149 + 74645514 tttttgagcacctactatatgccaggcatatTACTATTAATAACCTTATTTATTATTCACAGCAATACTGTGACATATTAGAACCCCCATTTGATATACAATAC-AAAACTGAGCTTCTGAGAATATTTGTCTAAGGTC-----ACAGTGAGTGA- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9981049 149 - 75148670 tttttgagcacctaccatatgccaggcatattactattaataaccttatttattattcacagcaatactgtgacatattagaacccccatttgatatacaatac-aaaactgagcttctgagaatatttgtctaaggtc-----acagtgagtga- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112860768 151 + 159171411 ttcttgagcatctactctgtgccaggcatattactattaaaaaccttatttgttattcacagcaatactatgacatattagaacccccatttgatatacaagacaaaaaccgagcttctgagaagatttgtctaaggtc-----acagtcagtgag i calJac3.chr5 C 0 C 0 s mm10.chr11 99572669 114 + 122082543 --------------------------------CCTATTGAGTATTTTA-GTGGTGCTCACAGTAGTTCT-CGAGACATT-GAACTCTCCCTAAACA-ATGGTTT-AAAAATG-GCTTCAGAGGA----TCTCTGAGACCCATCTACAGTCAGCCAG i mm10.chr11 C 0 C 0 e canFam3.chr9 39403778 0 - 61074082 C a score=288679.000000 s hg38.chr17_JH159146v1_alt 165794 73 + 278131 tgagtagagttgggattttaaactcaggtcttctgattcctttc-tcatcccactctctgcccctTCCTACAGT s panTro4.chr17 66284914 73 - 82630442 tgagtagatatgggattttaaactcaggtcttctgattcctttc-tcatcccactctctgtccCTTCCTACAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8308327 73 - 17838096 tgagtagatttgggattttaaactcaggtcttctgattcctttc-tcatcccactctctgtccCTTCCTACAGT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48045306 73 - 81552678 cgagtagatttgggattttaaactcaggtcttctgattcctttc-tcattccgctctctgtccCTTCCTACAGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53146333 72 + 80904711 -gagtagatttgggattttaaactcaggtcttctgattccTTTC-TCATCTCACTCTCTGTCCCTTCCTACAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52711841 72 + 80997621 -gagtagatttgggattttaaactcaggtcttctgattcctttc-tcatctcactctctgtccCTTCCTACAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47714277 72 + 74645514 -GAGTAGATTTGGGATTTTAAACTCAGGTCTTCTGATTCCTTTC-TCATCCCACTCTCTGTCCCTTCCTACAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9981198 72 - 75148670 -gagtagatttgggattttaaactcaggtcttctgatttctttc-tcatctcactctctgtccCTTCCTACAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112860919 73 + 159171411 tgagtagatttgggatttggagctcaagtcttctgattccttcc-tcatcgcactctctgtccCTTCCTACAGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99572783 71 + 122082543 AGAGTAGATTTGAG--TTTGAACTTGGGATTCCTGACTCCTTTCATCATCTTCTTCTGTGT-CCTGCCTACAGT i mm10.chr11 C 0 I 1 s canFam3.chr9 39403778 61 - 61074082 TGGGTAAATTTGGGATTTTCA-CTTAGGTCTTCTGATTCCTTTT------------TTTGTCCCTTCCTACAGT i canFam3.chr9 C 0 C 0 a score=169151.000000 s hg38.chr17_JH159146v1_alt 165867 51 + 278131 -TAAAAACATCTTCAGAGTGATTAAAGTGT-CAACCTATACTCAAATACAATa s panTro4.chr17 66284987 51 - 82630442 -TAAAAACATCTTTAGAGTGATTAAAGTGT-CAACCTATACTCAAATACAATa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8308400 51 - 17838096 -TAAAAACATCTTTAGAGTGATTAAAGTGT-CAACCTATACTCAAATACAATa i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48045379 51 - 81552678 -TAAAAGCATCTTTAGAGTGATCAAATTGT-CAACCTATATTCAAATAAAATa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53146405 51 + 80904711 -TAAAAACGTCTTTAGGGTGATCAAATTGT-TAACCTATACTCAAACACAATa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52711913 51 + 80997621 -TAAAAACGTCTTTAGGGTGATCAAATTGT-TAACCTATACTCAAACACAATa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47714349 51 + 74645514 -TAAAAACGTCTTTAGGGTGATCAAATTGT-TAACCTATACTCAAACACAATA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9981270 51 - 75148670 -TAAAAACGTCTCTAGGGTGATCAAATTGT-TAACCTATACTCAAACACAATa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112860992 51 + 159171411 -TAAAAACCTCTTTACAGTGATCAAAGTGT-CAATCTATACTCAAATACGATa i calJac3.chr5 C 0 C 0 s canFam3.chr9 39403839 53 - 61074082 TAAAAAATGTCTTTCAAGTGATCAGAGTGTACAATCTGTACTCAAATACAATA i canFam3.chr9 C 0 I 2 e mm10.chr11 99572854 1 + 122082543 I a score=987221.000000 s hg38.chr17_JH159146v1_alt 165918 340 + 278131 gcagtccccattctttttgacacca-gggaccggtttcatggaggacaatttttccatggac--tgtgggtgggatgaaggtgggatggttttgggatgaaactgtcccacctcagacagattctcacaaggaacgtgcaaccttgatccctcgcacgtgcggttcacaat-------aggctttgcgcttctgtgagaatctaatgccaccgccgatctgctgagctgacaggaggcaaagctcaggtgggaacacttgctcctcggctgctcacctcctgccatgtgatccagttcctaacaggccagggacaggtatcgctctgcaacccggggcttggggacccct s panTro4.chr17 66285038 340 - 82630442 gcagtccccagtctttttgacacca-gggaccagtttcatggaggacaatttttccatggac--tgtgggtgggatgagggtgggatggttttgggatgaaactgtcccacctcagacagattctcacaaggaacgtgcaaccttgatccctcgcacgtgcggttcacaat-------aggctttgcgcttctgtgagaatctaatgccaccgccgatctgctgatctgacaggaggcgaagctcaggcaggaatacttgctcctcggctgctcacctcctgccatgtgatccagttcctaacaggccagggacaggtatcgctctgcagcccggggcttggggacccct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8308451 337 - 17838096 gcagtccccagcctttttgacacca-gtgaccggtttcatggaggacaatttttccactgac--tgtgggtgggatgagggtgggatggttttgggatgaaactgtcccacctcagacagattctcacaaggaacttgcaacctggatccctcacacgtgcagttcacaat-------aggctttgcacttctatgagaatctaatg---ctgccgatctgctgatctgacaggaggcaaatctcaggcgggaatacttgctccttggctgctcacctcctgctgtgtgatccagttcctaacaggccagggacaggtatcactctgcagcctggggcttggggacccct i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48045430 340 - 81552678 gctgcccccagtctttttgacacca-gggaccggtttcatggaggacaatttttccacggac--tgtgggtgggatgagggtgggatggttttgggatgaaactgtcccacctcagacagattctcacaaggaacgtgcaacctggatccctcacacgtgcagttcactat-------aggctttgcgcttctatgagaatctaatgctgccgccgatctgctgatctgacaagaggcgaagctcaggcgggaatacttgctcctcggctgctcacctccggctgtgtgatccagttcctaacaggccagggacaggtatcgctctgcagcccggggcttggggacccct i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53146456 341 + 80904711 gcagtccccaggctttttgatacaaggggactggtttcatggaggacaatttttccacggac--tgtgggtgggatgggagtgggatggttttgggatgaaactgtcccatctcagacggattctcacaaggagtgtgcaacctggatcccttgcatgtgcagttcacagt-------aggctttgcgctcctatgaaaatcgaatgctgccgccgatctgctgatctgacaggaggcggagctcaggcgggaataattgctcctctgctgctcacctcctgctgtgtgatccagttcctaacaggccagggacagctatcgctccgcagcccgggacttggggacccct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52711964 341 + 80997621 gcagtccccaggctttttgatacaaggggactggtttcatggaggacaatttttccacggac--tgtgggtgggatgggagtgggatggttttgggatgaaactgtcccatctcagacggattctcacaaggagtgtgcaacctggatccctcgcatgtgcagttcacagt-------aggctttgcgctcctatgaaaatcgaatgctgccgccgatctgctgatctgacaggaggcggagctcaggcgggaatacttgctcctctgctgctcacctcctgctgtgtgatccagttcctaacaggccagggacagctatcgctccgcagcccgggacttggggacccct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47714400 341 + 74645514 GCAGTCCCCAGGCTTTTTGACACAaggggactggtttcatggaggacaatttttccacggac--tgtgggtgggatgggagtgggatggttttgggatgaaactgtccCATCTCAGACAGATTCTCACAAGGAGTGTGCAACCtggatccctcgcatgtgcagttcacagt-------aggctTTGCGCTCCTATGAAAATCGAATGCTGCCGCCGAtctgctgatctgacagaaggcggagctcaggcgggaATACTTGCTCctctgctgctcacctcctgctgtgtgatccagttcctaacaggccagggacAGCTATCGCTCCGCAGCCCGGGACTTGGGGACCCCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9981321 341 - 75148670 gcagtccccaggctttttgacacaaggggacaggtttcatggaggacaatttttccacggac--tgtgggtgggttgggagtgggatggttttgggatgaaactgtcccatctcagacagattctcacaaggagtgtgcaacctggatccctcgcatgtgtagttcacagt-------aggctttgcgctcctttgaaaatcgaatgccgccgccgatctgctgatctgacaggaggcagagctcaggcgggaatacttgctcctctgctgctcacctcctgctgtgtgatccagttcctaacaggccagggacagctatcgctctgcagcccgggacttggggacccct i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112861043 334 + 159171411 acagtccccaacttttttgacacca-gggaccagtttcatggaggacaatttttccatggactgtgtgggtggggtggggatgggatggtttggggacaaaactgccc---ctcagacagattctcacaaggagtgtgcaacctggatcccttgcatgtgcagttcacagttcacagaatgctttgcactcctatgagaatctaatgccgccgctgatctactgatctgacaagaggcagagctcag------------gctcctctgctcctcacctcctgatgtgtggtccagttcctaacaggccagggacagatactgctctgcagcctggaggtgggggacccct i calJac3.chr5 C 0 C 0 e canFam3.chr9 39403892 2 - 61074082 I e mm10.chr11 99572854 1 + 122082543 I a score=135170.000000 s hg38.chr17_JH159146v1_alt 166258 45 + 278131 gAGAAACAACATAACAAGTTTGTTTTGCTTAGTACACGTTAACAC s panTro4.chr17 66285378 45 - 82630442 gAGAAACAACATAACAAGTTTGTTTTGCTTAGTACATGTTAACAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8308788 45 - 17838096 gAGAAACAACATAACAAGTTTGTTTTGCTTAGTACATGTTAACAC i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48045770 44 - 81552678 gAGAAACAACATAACAAG-TTGTTTTGCTTAGTAAATGTTAACAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53146797 45 + 80904711 gAAAAACAACATGACAAGTTTGTTTTGCTTAGTACGTGTTAACAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52712305 45 + 80997621 gAAAAACAACATGACAAGTTTGTTTTGCTTAGTATGTGTTAACAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47714741 44 + 74645514 GAAAAAC-ACATGACAAGTTTGTTTTGCTTAGTACGTGTTAACAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9981662 45 - 75148670 gAAAAACAACATGACAAGTTTGTTTTCCTTAGTACGTGTTAACAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112861377 42 + 159171411 gAAATATAAC---ACAAGTTTGTTTTGCTTAGTACATGTTAATAC i calJac3.chr5 C 0 C 0 s mm10.chr11 99572855 45 + 122082543 GAAACACCACTCAAGTTATTTGTTTCGCTTAGCGCATGCCAACAC i mm10.chr11 I 1 C 0 e canFam3.chr9 39403892 2 - 61074082 I a score=1239411.000000 s hg38.chr17_JH159146v1_alt 166303 366 + 278131 ACAAAACAAGTGTTTTGTATGACTTCTAGTCTCAGCTTCTGGTTCCCTCTAACTACTATCCCTGGCTTTTGTGCAGTTCTCTTTCTGTTTGGTCCCTTCTGATCACTAAACCAACAAGCGTTGGAGTAAAGGGCAAAAATGTTAACCTCAGAGTTTCCTGAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TCTCCTGAATAGAGAACGTTGAATT---TCCTTCTGTTCAGA-G-TTTTTTGTGGCTGTTGCT----GTCAACCTCTGCCATCTCTAACTCTTCTCAAACTTCCTCATGCTTCCTGGCTTCAGTTGCTCTGAAAATCCTGAGTTCTTTCCCTTCTTCCTACCGTAAGGTTATCA s panTro4.chr17 66285423 366 - 82630442 ACAAAACAAGTGTTTCCTATGACTTCTAGTCTCAGCTTCTGGTTCCCTCTAACTTCTATCCCTGGCTTTTGTGCAGTTCTCTTTCTGTTTGGTCCCTTCTGATCACTAAACCAACAAGCGTTGGAGTAAAGGGCAAAAATGTTAACCTCAGAGTTTCCTGAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TCTCCTGAATAGAGAACGTTGAATT---TCCTTCTGTTCAGA-G-TTTTTTGTGGCTGTTGCT----GTCAACCTCTGCCATCTCTAACTCTTCTCAAACTTCCTCATGCTTCCTGGCTTCAGTTGCTCTGAAAATCCTGAGTTCTTTCCCTTCTTCCTACCGTAAGGTTATCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8308833 366 - 17838096 AGAAAACAAGTGTTTCGTATGACTTCTAGTCCCAGCTTCTGGTTCCCTCTAACTTCTATCCCTGTCTTTTGTGCAGTTCTCTTTCTGTTTGGTCCCTTCTGATCACTAAACCAACAAGCGTTGGAGTAAAGGGCAAAAATGTTAACCTCAGAGTTTCCTGAATTCTATCTCTAGGATTCTATTGTTTTTTCTCCCTCAACC---------TCTCCTGAATAGAGAACCTTGAATT---TCCTTCTGTTTAGA-G-TTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAACTCTTCTCAAACTTCCTCATGCTTTCTGGCTTCAGTTGCTCTGAAAATCCTGAGTTCTTTCCCTTCTTCTTACCGTAAGGTTATCA i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48045814 366 - 81552678 ACAAAACAAGTGTTTCGTATGACTTCTGGTCTCAGCTTCTGGTTCCCTCTAACTTCTATCCCTGGCTTTTGTGCAGTTCTCTTTCTGTTTGGTCCCTTCTGATCACTAAACCAACAAGCATTGGAGTAAAGGGCAAAAATGTTAACCTCAGAGTTTCCTGAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TTTCCTGAATAGAGAACCTTGAATT---TCCTTCTGTTTAGA-G-TTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAACTCTTCTCAAACTTTCTCATGCTTCCTGGCTTCAGTTGCTCTGAAAATCCTGAGTTCTTTCCCTTCTTCCTACTGTAAGGTTATCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53146842 361 + 80904711 ACAAAGCAAGTGTTTCGTATTACTTCTAGTCTCAGCTTCCGGTTCCCTCTAACTTCTATCCCTGGCTTTTGTGCAGCTCTCTTTCCGTTTGGCCTCGTCTGATCACTAAACCAACAAGTGTAGGAATAaagggtaaaaatgttaacctcagagttgcc-gaattctatctctaggattctattgttttgtctccctcaacc---------tctcctgAATAGAGAACCTTGAATT---TCCTTCTTTTAAGA-GCCTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAGCTCTTCTCTAACTTCCTCATGCTTCCTGGCTTCAGTTGC-----AAATCCTGAGTTCTTTCCCTTCTTCCTACCGTGAGCTTATCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52712350 361 + 80997621 ACAAAGCAAGTGTTTCGTATTACTTCTAGTCTCAGCTTCCGGTTCCCTCTAACTTCTATCCCTGGCTTTTGTGCAGCTCTCTTTCCGTTTGGCCTCGTCTGATCACTAAACCAACAAGTGTAGGAATAAAGGGTAAAAATGTTAACCTCAGAGTTGCC-GAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TCTCCTGAATAGAGAACCTTGAATT---TCCTTCTTTTAAGA-GCCTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAGCTCTTCTCTAACTTCCTCATGCTTCCTGGCTTCAGTTGC-----AAATCCTGAGTTCTTTCCCTTCTTCCTACCGTGAGCTTATCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47714785 361 + 74645514 ACAAAGCAAGTGTTTCGTATTACTTCTAATCTCAGCTTCCAGTTCCCTCTAACTTCTATCTGTGGCTTTTGTGCAGCTCTCTTTCCGTTTGGCCTTGTCTGATCACTAAACCAACAAGTGTAGGAATAAAGGGTAAAAACGTTAACCTCAGAGTTGCC-GAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TCTCCTGAATACAGAACcttgaatt---tccttcttttaaga-GCCTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCCAGCTCTTCTCTAACTTCCTCATGCTTCCTGGCTTCAGTTGC-----AAATCCTGagttctttcccttcttcctaccGTGAGCTTATCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9981707 361 - 75148670 ACAAAGCAAGTGTTTCGTATTACTTCTAGTCTCAGCTTCCGGTTCCCTCTAACTTCTATCCCTGGCTTTTGTGCAGCTCTCTTTCTGTTTGGCCCCGTCTGATCACTAAACCAACAAGTGTAGGAATAAAGGGTAAAAATGTTAACCTCAGAGTTGCC-GAATTCTATCTCTAGGATTCTATTGTTTTGTCTCCCTCAACC---------TCTCCTGAATAGAGAACCTTGAATT---TCCTTCTTTTAAGA-GCCTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAGCTCTTCTCTAACTTCCTCATGCTTCCTGGCTTCAGTTGC-----AAATCCTGAGTTCTTTCCCTTCTTCCTACCGTGAGCTTATCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112861419 367 + 159171411 ACAAAACAAGAGTTTAGTATTACTTCTAGTCTCAGC-TCTGGTTCACTCTAACTTCTGTTCCTGACTTTCGTTCCGTTCTCTTTCAGTTTGGTCTCTTCCGATCACTAAACCAATAAGTGTTGGAGCAAAGTGTAAAAATGTCAACCTCAGAGTCTCCTGAATTCCATCCTTAGGATTCTATTATTTTGTCTCCCTTACCC---------CCTCCTGATTAGAGAGCCTTGAATT---TTCTTCTTTTTTCATGTTTTTTTGTGGCTGTTGCT----GTCAACCTCTGTCATCTCTAACTCTTTTCAGACTTCCTCATGCTTCCTGGCTTCAGTTGCTCTGAAAATCCTGAGTTCTTTCTCATCTTCTTACCACCAGGTTATCA i calJac3.chr5 C 0 C 0 s mm10.chr11 99572900 349 + 122082543 ATCAACGGAGACGCCGGCATC-CTCCCAAACCCAGCTTT-------------ACTCTCTCCCTGGCCTTTCTGCCGTT-TCGTTTATCCAGGTCCTCTCTGCTCACTAAA-CAGTGAGTGTTTGAATAAGGTTTAAAAACACGAAGCTTGTACGTTCT-GAGTGCTAGGTC-AAACGTCTATCATTTTGTCTTCCTTGTCA---------CCTCCGTCGTGAAGAACCTCGGACCCCGTCTGTCTGCTTTGC-G-CCCTTCTCAGCCGTCACT----CCCACACGCTGTCACTTCTAGCTCTTCTCAAACTCCCTCATCATTCCTGATGCCAGCTTCGCTGGAGATCCCCTGTTACT--CCTTCCTCCCACAGTATTGTTAACA i mm10.chr11 C 0 I 4 s canFam3.chr9 39403894 375 - 61074082 ACAATATATTTGTTTGGC-TTACTTCCAGTCTCAGCCCCTGGTCCATACTAATTTCTATTCCTAACCTTTGTGTACTTCTCTCTCATTTTTGTCTCTTCTGTTCAATTAAACTGTAAATATTGGAATGAAGGTTCAAAATACTAACTTCAGAGTTTCCTGAATTCTATCTTCAGGATTC-ATTGTATTGTTTCCTGTTTCCCCAGGGATGCCCCCTAAGGGGAGAACCATGAATT---T-CTCCTGCATCAA-G-ATCTTCCTGGCTGTTATTCTAGATAAACATCTGTCATCT-TGACTCTTCTTGAACTTTCTCATGGTTGACAACTTCAGTGGTTCTGAAAATCCTGAGTTCCTTCACTTCTCCATCCCACAGTGTTATAA i canFam3.chr9 I 2 C 0 a score=971080.000000 s hg38.chr17_JH159146v1_alt 166669 322 + 278131 GCCCACTAGGATCTTTTTTTTCCAGGGTCACAGGTGTCATCTTTTGAACAAGTCAGTACTGTCTTAGAGATAACATAATTGTAGTTCTTTACTCTGGCCCCATTTGGACCAAGATTTCTCTGATCCTTTTGGGAAAATATCTCGTTTGTTTCATTCATGCAACTAAAATAAATAAGATATTAAAAAATTGAGAAAATAAAAG--TCGAAATTTTGT-----------------------------------------------------------------------ATGTTAAATATTAACCCATTAAAAGC------------------------------------------------------CAGGAATTTTGA-TTT------------------------TCATGTTGTG-----------------------------------------------TATTCTACCACTCCTGTTTCTCTATCCCATATTTGTAATGCAAGAACAAAGAAGAAA- s panTro4.chr17 66285789 322 - 82630442 GCCCACTAGGATCTTTTTTTTCCAGGGTCACAGGTGTCATCTTTTGAACAAGTCATTACTGTCTTAGAGATAACATAATTGTAGTTCTTTACTCTGGCCCCATTTGGACCAAGATTTCTCTGATCCTTTTGGGAAAATATTTCGTTTGTTTCATTCATGCAACTAAAATAAATAAGTTATTAAAAAATTGAGAAAATAAAAG--TCGAAATTTTGT-----------------------------------------------------------------------ATGTTAAATATTAACCCATTAAAAGC------------------------------------------------------CAGGAATTTTGA-TTT------------------------TCATGTTGTG-----------------------------------------------TACTCTACCACTCCTGTTTCTCTATCCCATATTTGTAATGCAAGAACAAAGAAGAAA- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8309199 323 - 17838096 GCCCATTAGGATC-TTTTTTTCCAGGGTCACAGGTGTCATCTTTTGAACAAGTAAGTACTGTCTTAGAGATAACATAATTGTAGTTCTTTACTCTGGCCCCATTTGGACCAAGATTTCTCTGATCCTTTTGGGAAAATATTTGGTTTGTTTCATTCATGCAACtaaaataaataagatattaaaaaattaaGAAAGTGAAAGTATTGAAATTTTGT-----------------------------------------------------------------------ATGTTAAGTATTAACCAATTAAAAGC------------------------------------------------------CAGGAATTTTGA-TTT------------------------TCATGTTGTG-----------------------------------------------TACTGTACCAGTCCTGTTTCTCTATCCCATATTTGTAATGCAAGAACAAAGAAGAAA- i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48046180 323 - 81552678 GCCCACTAGGATC-TTTTTTTCCAGGGTCACAGGTGTCATCTTTCGAACAAGTCAGTACTGTCTTAGAGATAACATAATTGTAGTTCTTTACTCTGGCCCCATTTGGACCAAGATTTCTCTGATCCTTTTGGGAAAATATTTGGTTTGTTTCATTCATGCAACTAAAATAAATAAGATATTAAAAAATTGAGAAAGTAAAAGTCTTGAAATTTTGT-----------------------------------------------------------------------ATGTTAGGTATTAACCCATTAAAAGC------------------------------------------------------CAGGAATTTTGA-TTT------------------------TCATGTTGCG-----------------------------------------------TACTGTACCAGTCCTGTTTCTCTATCCCATATTTGTAATGCAAGAACAAAGAAGAAA- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53147203 323 + 80904711 GCCCACTAGGATC-TTTTTTTCCGGGGTCACAGGTGTCATATTTTGAACAAGTCAGTACTGTCTTAGAGTTAACATAATTGTAGTTCTTTACTGTGACCCCATTCAGAAAAAGACTTCTCTGATCCTTTTGGGAAAATATTTGGTGTGTTTCATTCATGCAACTAAAATAAATAAGATACTAAAAAATTGAGAAAGCAAAAGTCTTGACATTTTGT-----------------------------------------------------------------------ATATTAAGTGTTAACCCATTAAAAGT------------------------------------------------------CAGGGATTTTGA-TTT------------------------TCGTGTTGTG-----------------------------------------------TAGTGTACCAGTCCTGTTTCTCTATGTCATATTTGTAATGCAGGAACAAAGAAGAAC- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52712711 323 + 80997621 GCCCACTAGGATC-TTTTTTTCCGGGGTCACAGGTGTCATATTTTGAACAAGTCAGTACTGTCTTAGAGTTAACATAATTGTAGTTCTTTACTGTGACCCCATTCGGAAAAAGACTTCTCTGATCCTTTTGGGAAAATATTTGGTGTGTTTCATTCATGCAACTAAAATAAATAAGATACTAAAAAATTGAGAAAGCAAAAGTCTTGACATTTTGT-----------------------------------------------------------------------ATATTAAGTGTTAACCCATTAAAAGC------------------------------------------------------CAGGGATTTTGA-TTT------------------------TCATGTTGTG-----------------------------------------------TAGTGTACCAGTCCTGTTTCTCTATGTCATATTTGTAATGCAGGAACAAAGAAGAAC- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47715146 322 + 74645514 GCCCACTAGGATC-ttttttt-CAGGGTCACAGGTGTCATATTTTGAACAAGTCAGTACTGTCTTAGAGTTAACATAATTGTAGTTCTTTACTGTGACCCCATTCGGAAAAAGACTTCTCTGATCCTTTTGGGAAAATATTTGGTGTGTTTCATTCATGcaactaaaataaataagatactaAAAAATTGAGAAAGCAAAAGTCTTGACATTTTGC-----------------------------------------------------------------------ATATTAAGTGTTAACCCATTAAAAGC------------------------------------------------------CAGGGATTTTGA-TTT------------------------TCGTGTTGTG-----------------------------------------------TAGTGTACCAGTCCTGTTTCTCTATGTCATATTTGTAATGCAGGaacaaagaagaac- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9982068 323 - 75148670 GCCCACTAGGATC-TTTTTTTCCGGGGTCACAGGTGTCATATTTTGAACAAGTCAGTACTGTCTTAGAGTTAACATAATTGTAGTTCTTTACTATGACCCCATTCGGAAAAAGACTTCTCTGATCCTTTTGGGAAAATATTTGGTGTGTTTCATTCATGCAACTAAAATAAGTAAGATACTAAAAAATTGAGAAAGCAAAAGTCTTGACATTTTGT-----------------------------------------------------------------------ATGTTAAGTGTTAACCCATTAAAAGC------------------------------------------------------CAGGGATTTTGA-TTT------------------------TCGTGTTGTG-----------------------------------------------TAGTGTACCAGTCCTGTTTCTGTATGTCATATTTGTAATGCAGAAACAAAGAAGAAC- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112861786 324 + 159171411 ACCCACTACGATC-TTTCTTTCCAGGTTCGCAGGTGTCATCTTTGGAACAAGTTAATACTGTCTTAGAGATAACATAATGACAGTTCTTTACTCTGGCCCCATTCGGACCAAGAGTTCTCTGAATCTTTTGGGAAAATATTTGGTTTGTTTCATTTATGCAACTAAAATAAGTAAGATATTAAAAATTTGAGAAAGCAAAAGTCTTGAAATTTTGT-----------------------------------------------------------------------ATGTTAAATATTAACCCATTAAAAGC------------------------------------------------------CAGGAATTTTGATTTT------------------------TTATTTAATG-----------------------------------------------TAGTGTATCAGCCCTGTTTCTCTATCTCATATTTGTAATGCAGGAGCAAAGAAGAAA- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39404269 495 - 61074082 GCCTACTGGCATC-TTTTCTG-CAGGTTTACAGATCTTATCTTTTGAACAAAACAATACTATCTT-------------------TACTTTATTCTGGCTCCCTTCAGACCAAGATTCCTCTCATCCTTTTGGGAAAAGATTTAGTTTGTCTCTTCCAC----TGAAGATCAATACTATATTGAAAAACTAAGAGA-CAAAAGTCTTGAAATTTTGTGTTTTCAATGTTATTCTAGTAAAAGCCAGCATTTTTGATTTTGAGGTCATGTAGTATATAtttttttaaagattttatttatttattcatgagagacacagactgagagagagaggcagagacacaggcagagggagaagcaggctccatgcagggaacccga-tgtggacttgatcccgggactccaggatcacgctctgcgctgaaggcagatgctcaactgctgagccactcagggatcccCACATAGTATATCAATTCTTTTACTCTGTATTGTATTTGTGATGTAGGAATCAAGAAGAGAA i canFam3.chr9 C 0 C 0 e mm10.chr11 99573249 4 + 122082543 I a score=56534.000000 s hg38.chr17_JH159146v1_alt 166991 15 + 278131 AAAGAGAACGTGCTT s panTro4.chr17 66286111 15 - 82630442 AAAGAGAACGTGCTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8309522 15 - 17838096 AAAGAGAACATGCTT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48046503 15 - 81552678 AAAGAAAACGTGCTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53147526 15 + 80904711 AAAGAGAACATGCTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52713034 15 + 80997621 AAAGAGAACATGCTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47715468 15 + 74645514 aaagagaacaTGCTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9982391 15 - 75148670 AAAGAGAACATGCTT i chlSab2.chr16 C 0 I 239 s calJac3.chr5 112862110 15 + 159171411 AAAGAGAATGTGCTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99573253 15 + 122082543 ATGGAGATTTCGCTT i mm10.chr11 I 4 C 0 s canFam3.chr9 39404764 15 - 61074082 AAAAAGAATGTTTTT i canFam3.chr9 C 0 C 0 a score=56225.000000 s hg38.chr17_JH159146v1_alt 167006 12 + 278131 AGAAATGAATAG s panTro4.chr17 66286126 12 - 82630442 AGAAATGAATAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8309537 12 - 17838096 AGAAATGAATAG i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48046518 12 - 81552678 AGAAATGACTAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53147541 12 + 80904711 AGAAATGAATAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52713049 12 + 80997621 AGAAATGAATAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47715483 12 + 74645514 AGAAATGAATAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9982645 12 - 75148670 agaaaTGAATAG i chlSab2.chr16 I 239 C 0 s calJac3.chr5 112862125 12 + 159171411 AGAAATGAATAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99573268 12 + 122082543 AGAAAGGAACAG i mm10.chr11 C 0 C 0 s canFam3.chr9 39404779 12 - 61074082 AGAAATGAATAG i canFam3.chr9 C 0 I 104 a score=1246315.000000 s hg38.chr17_JH159146v1_alt 167018 339 + 278131 GCCCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATAGTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACAATTTTACTAAACTCTCAAATCTCCGGTCTTACCCAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAACATCCCTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTCTAATCGCACTTAACAGAATAATCATGATGGAGAATAGGTTTCTTAAGTCAGAGTTATGATTCTGGGGATAAGTCAGTC----ATTAACAAAGGGCCGTCTGCAGTCAGGTCTCTG-GGCACATCCCACTTTTCATGGAAGGCCTTTGAT s panTro4.chr17 66286138 339 - 82630442 GCCCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACAATTTTACTAAACTCTCAAATCTCCAGTCTTACCCAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAACATCCCTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTCTAATCGTATTTAACAGAATAATCATGATGGAGAATAGGTTTCTTAAGTCAGAGTTATGATTTTGGGGATAAGTCAGTC----ATTAACAAAAGGCCGTCTGCAGTCAGGTCTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8309549 339 - 17838096 GCCCAACATAG-----------------------------------------------GCTCGT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACAATTTTACTAAACTCTCAAATCTCCAGTCTTACCCAAGGCTTACATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAACATCCCTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTCTAATGGCATTTAACAGAATAATCATGATGGAGAATAGGTTTCTTAAGTCAGAGTTATGATTTTTGGGATAAGTCAGTC----ATTAACAAAGGGCCGTCTGCAGTCAGGTCTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGAT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48046530 339 - 81552678 GCCCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATATTTGGTGCTTTGGATTAGTCTCTCTCAATCTCA-CA-AAACAATTTTACTAAACTCTCAAATCTCCAGTCTTACCCAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAACATCCCTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTCTAATGGCATTTAACAGAATAATCATGATGGAGAATAGGTTTCTTAAGTCAGAGTTACGATTTTGGGGATAAGTCAGTC----ATTAACAAAGGGCCATCTGCAGTCAGGTCTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53147553 337 + 80904711 G-CCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACGATTTTACTAAACTCT-AAATCTCCAGTCTTACCTAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAAAATCCTTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTATAATGGCATTTAACAGAATAATCATGATGGACAATAGGTTTCTTAAGTCAGAGTTATGATTTGGGGGATAAATCAGTC----GTTAACAAAGGGCCGTCTGCAGTCAGGTGTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52713061 337 + 80997621 G-CCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACGATTTTACTAAACTCT-AAATCTCCAGTCTTACCTAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAAAATCCTTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTATAATGGCATTTAACAGAATAATCATGATGGACAATAGGTTTCTTAAGTCAGAGTTATGATTTGGGGGATAAATCAGTC----GTTAACAAAGGGCCATCTGCAGTCAGGTGTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47715495 337 + 74645514 G-CCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACGATTTTACTAAACTCT-AAATCTCCAGTCTTACCTAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAAAATCCCTTTGTGTCTTTGAGCTTTTAAAACTAA-TTCTGTCTAATGGCATTTAACAGAATAATCATGATGGACAATAGGTTTCTTAAGTCAGAGTTATGATTTGGGGGATAAATCAGTC----GTTAACAAAGGGCCGTCTGCAGTCAGGTGTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9982657 338 - 75148670 GCCCAACATAG-----------------------------------------------GCTCAT--------------------------------------------------------------------------AATACTTGGTGCTTTGGATTAGTCTCTCTCAACCTCA-CA-AAACGATTTTACTAAACTCT-AAATCTCCAGTCTTACCTAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTCTCCCTTCA-AGTTTCTCAAAATCCCTTTGTGTCTTTGAGCTATTAAAACTAA-TTCTGTCTAATGGCATTTAACAGAATAATCATGATGGACAATAGGTTTCTTAAGTCAGAGTTATGATTTGGGGGATAAGTCAGTC----ATTACCAAAGGGCCATCTGCAGTCAGGTGTCTG-GGCACATCCCACTTTTCATGGAAGGCTTTTGGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112862137 332 + 159171411 GCCCAACATAG-----------------------------------------------GCTAAT--------------------------------------------------------------------------AATACTTGGTGTTTTGGATTAGCCTCTCTCAAGCTCA-CA-AAACATTTTCACTAAACTCTCAAATCTCCAGTCTTACCCAAGGCTTTCATGCTTTAGTTGATGTGATGATTCAACATTTTTTCCCTTCA-AGTTTCTGAAAATCCCTTTGTGTCTTTAAGTGTTTAAAACTAA-TTCTGTCTAATGGTATTTAATAGAATAATCATGATGGA-AACAGGTTTCTTAAGTC------ATGATTTTGGGGATAAGTCAGTA----ATTAATGAAGGGCCGTCTGCAGTCAGTTCTCTG-GGCTCATCCCACTTTTCATGGAAGGCTTTTGAT i calJac3.chr5 C 0 C 0 s mm10.chr11 99573280 316 + 122082543 GCCCTATGTGC-----------------------------------------------AGTC-----------------------------------------------------------------------------ACACTTACTGCTGTGGATTAGCATTTGTTACGCTTA-CATAAACGACTCTGCTTAGCTCTCAAATCCTTAGCTTCACCCAAAGCTTCCATGCTTCAGTGGATGTGATGATTC-ACAGTCTCTGCCTTCAGAATTTCCCCAAATTGCTCTATGTCCTTTGACTTCTAAAAATGATTTTTGCCCATTGGCATTTAA-AGAGCA-----GAGTGGGTTCTGGTTTCTTCTATTAGAGCTGTGGTTT---GGGCATCTCAGGA----GTCAACAGAGGGTCTTC-------------CTG-GATATTATCCTCTTCCTATAAGAAAGTTTCTAT i mm10.chr11 C 0 C 0 s canFam3.chr9 39404895 463 - 61074082 gctcatcatggagtctgcttggcattctctgtctccctctccctgtgcccctccccctgctcatacaaaatctaccccccaaaataaataaataaatctttaaaaaaGAGAAAGAAATGAAAATCCCCAATATGAACAAATAGTTAGTGCT-TGGATTAGTCTCTCCGAACCTTATTA-GAACAAAATTACTTAATTCT-CAATCCCCAGGCTCACTTAAGGCTTTCATGCTTCAGTTGATGTGATGACTCAACATTTTCTCCCTTGA-AGTTTCTCAAAATCCCTTTGTATTCTTGGGCTTTTAAAACTAA-GTTTGCCTATTAGCATTT-ATAGAATAATCATGTTGGAAAGCAGGTTTCTCAAGTCAGAGTTATGGTTTTGGGGATAAGTCAGTCAGTAATTAACAAAGGGCTACCTGCTGTCAGGTCTCCATGGCACAGCCCACTTTACAGAGAAGGTTTTTAAT i canFam3.chr9 I 104 I 197 a score=1115708.000000 s hg38.chr17_JH159146v1_alt 167357 328 + 278131 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAATGTTGTT---GAGTAATCTTTCTAGTTTCTCAATTGGATTC-TAACAGGTCTAAAATGCTGTAATTCTCTGACTGCCATCTCCAAAG------CTCAGATA-TAA-TTTTTTTCTCATAATCCACTATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGCTCACTAAATAATCTAA--TTTTTCAAAGGCAGTAAGAGTATAACAGTTAGGGTCCC-GCAGAAGATGAGAACCAAACCCTTTCTTTTTCTATTGAATAAAATTCATAAGAATAATTTT----TAAGCTGTT-CACTAGGTA s panTro4.chr17 66286477 322 - 82630442 AGAAAAGGTGGAACTTTCTTAACTACGGAGCTTAATGTTGTT---GAGTAATCTTTCTAGTTTCTCAATTGGATTC-TAACAGGTCTAAAATGCTGTAATTCTCTGACTGCCATCTCCAAAG------CTCAGATA-TAA-TTTTTTTCTCATAATCCACTATGGTGATTAATGAAAGGGAGTAAGAGAACATTCTGTACAAATGGCTCACTAAATAATCTAA--TTTTTCAAAGGCAGTAA------AACAGTTAGGGTCCC-ACAGAAGATGAGAACAAAACCCTTTCTTTTTCTATTGAATAAAATTCATACAAATAATTTT----TAAGCTGTT-CACTAGGTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8309888 328 - 17838096 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAATGTTGTT---GAGTAATCTTTCTAGTTTCTCAATTGGATTC-TATCAGGTCTAAAATGCTGTAATTCTCTGACTGCCATCTCCAAAG------CTCAGATA-TAA-TTTTTTTCTCATAATCCACTATGGTGATTAATGAAAGGGAGTAAATGAACATTCTGTACAAATGGCTCACTAAATAATCTGA--TTTTTCAAAGGCAGTAAGAGTATAACAGTTAGGGTCCC-ACAGAAGATGAGAACCAAACACTTTCTTTTTCTATTGAATAAAATTCATACGAATAATTTT----Taagctgtt-cactagata i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48046869 328 - 81552678 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAATGTCGTC---GAGTAATCTTTCTAGTTTCTCAATTGGATTC-TATCAGGTCTAAAATGCTGTAATTCTCTGACTGCTGTCTCCAAAG------CTCAGATA-TAA-TTTTTTTCTCATAATCCACTATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGGTCACTAAATAATCTAA--TTTTTCAAAGGCATTAAGAGTATAACAGTTAGGGTCCC-GCAGAAGATGAGAACCAAACCCTTTCTTTTTCTATTGAATAAAATTCATACGAATAATTTT----Taagctgtt-cactagata i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53147890 326 + 80904711 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAACGTTGCC---AAGTAATCTTTCTAGTTTCTCAGTTGGATTC-TGTCAGGCCTAAAATGCTGTAATTCTCTGACTACCATCTCCAAAG------CTCTGAGA-TAA-TTTTTTTCTCAT-ATCCACGATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGCTCACTAAATAATCAAA--TTTTCCAAAGGCAATAAGAGTATAACAGTTAGGGTCCC-ACAGGAGGTGAGAACCAAATGCTGT-TTTTTCTATTGAATAAAATTCGTATGAAGAATTTT----Taagttgtt-cactagaga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52713398 326 + 80997621 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAACGCTGCC---AAGTAATCTTTCTAGTTTCTCAGTTGGATTC-TGTCAGGCCTAAAATGCTGTAATTCTCTGACTACCATCTCCAAAG------CTCTGAGA-TAA-TTTTTTTCTCAT-ATCCACGATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGCTCACTAAATAATCAAA--TTTTCCAAAGGCAATAAGAGTATAACAGTTAGGGTCCC-ACAGGAGGTGAGAACCAAATGCTGT-TTTTTCTATTGAATAAAATTCGTATGAAGAATTTT----Taagttgtt-cactagaga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47715832 326 + 74645514 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAACGTTGCC---AAGTAATCTTTCTAGTTTCTCAGTTGGATTC-TGTCAGGCCTAAAATGCTGTAATTCTCTGACTACCATCTCCAAAG------ctctgaga-taa-tttttttcccat-atcCACTATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGCTCACTAAATAATCGAA--TTTTCCAAAGGCAATAAGAGTATAACAGTTAGGGTCCC-ACAGGAGGTGAGAACCAAATGCTGT-TTTTTCTATTGAATAAAATTTGTATGAAGAATTTT----TAAGTTGTT-CACTAGAGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9982995 326 - 75148670 AGAAAAGGTGGAACTTTCTTAACTACAGAGCTTAACGTTGCC---AAGTAATCTTTCTAGTTTCTCAGTTGGATTC-TGTCAGGCCTAAAATGCTGTAATTCTCTGACTGCCATCTCCAAAG------CTCTAAGA-TAA-TTTTTTTCTCAT-ATCCACTATGGTGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGCTCACTAAATAATTGAA--TTTTCCAAAGGCAATAAGAGTATAACAGTTAGGGTCCC-ACAGGAGGTGAGAACCAAATGCTGT-TTTTTCCATTGAATAAAATTCGTATGAAGAATTTT----Taagttgtt-cactagaga i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112862469 319 + 159171411 AGAGAACGTGGAACTTTCTTAACTACAGAGCCTAATGTTGCCAAGGAGTAATCTTTCTAGTTTCTTAATTGGATTC-TATCAGGCCTAAGATGCTGTAATTCTCTGGCTGCCATCTCCAAAG------CTCAGAGA-TAATTTTTTTTTTCATAATCCACTATGGGGATTAATGAAAGGGAGTAAGTGAACATTCTGTACAAATGGATCACTAAATAGTCTAA--TTTTCCAAAGGCAATGAGAGTATAACAGTTAGGGTCCC-ACAGGAGATGCGAATCAAATCCTTT--------------TAAAATTCGTATGAAGAATTTT----TAAATTGTTGGGCTAGGTA i calJac3.chr5 C 0 I 334 s mm10.chr11 99573596 322 + 122082543 AGAAATGG-GGAGATTTCTTAGCTACCACGTTCAGTGGGGCT---G-GCAATCTTTCTAGTGTCTAAACTAGATTC-AGTATTGCCCGAA----TGTGATTCCCTAGGTGTTTTCTCTAAAGTAGAGACTAATATG-TTC-CATGTTCCCCACAATCAGCTCTGACGAGCAACCAAAAGGAGTGAGTGTA-AGTCTGAGTGAATAGTTCACtaaataattttaatttttttaaaGGAGGCAA--ATGTAACAG---GGCTTAG-TCAGGAGACATGAACTACACACATG--ATTTGCATTGAATTAATTTAA----AACAATTTTTAACTAAGTTGTT-GGTTAGGTG i mm10.chr11 C 0 I 4 s canFam3.chr9 39405555 324 - 61074082 AGAAATGGTAGAGCTTTCTTAACTGCAGAGCTAAGTGGTGCC---AAGTAATCTTTCCAGTTCTTCAATCAGATTCTTGTCAGACCTATAA---TGTAATTCTCTGGTTGCCACTTCCAAAG------CTCAGAGACTAA-TTTTTTTTTCA--GTCAGTTTCCAAGATTAATCAA----AGTAAGTGGGAAGTCTGAACAAATGGTTCAGTAAATAATCTGA--ATTTTTAAAGGCAACAAGAGtataacagtaagggttccttcaggaaacaagaatcacacccatt--atttgaatcaagtgaattttatatggagaattttaaactaagttgtt-agataacta i canFam3.chr9 I 197 C 0 a score=478181.000000 s hg38.chr17_JH159146v1_alt 167685 144 + 278131 AA----------AAAAGAGGACCCTAAAATACCACAAATGTGGAAACTGCAGAAAGCCCTAGTTTTCCAGGGAAGCTTTAAAGGCCTAGCTTTAAATGCAGGAGG-CAAGGAATTAAACc---ttaga--------gagggagatgtcctgtagcgctgaaactgt- s panTro4.chr17 66286799 144 - 82630442 AA----------AAAAGAGGACCCTAAAATACCACAAATGTGGAAACTGCAGAAAGCCCTAGTTTTCCAGGGAAGCTTTAAAGGCCTAGCTTTAAATGCAAGAGG-CAAGGAATTAAACC---TTAGA--------GAGggagatgtcctgtagagctgaaactgt- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8310216 154 - 17838096 actgaaaggattaaaagaggaccctaaaataccacaaatgtggaaactgcagaaagccctagttttccagggaagctttaaaggcctagctttaaatgcaagagg-caaggaattaaacc---ttaga--------gagggagatgtcctgtagagctgaaactgt- i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48047197 154 - 81552678 actgaaaggattaaaagaggatcctaaaataccacaaatgtggcaactgctgaaagcCCTAGTTTTCCAGGGAAGCTTTAAAGGCCTAGCTTTAAATGCAAGAGG-CAAGGAATTAAACC---TTAGA--------GAGggagatgtcctgtagagctgaaattgt- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53148216 155 + 80904711 actgaaaggattgaaagaggactctaaaatatcacaaatgtggaaactgcagaaagTCCTAGTTTTCAAGGGAAGCTTTAAAGGCCTAGCTTTAAATGTAAGAGGCCAAGGAATTAAACC---TTAGa--------gaggcggatgtcctgtagagctgaaactgt- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52713724 154 + 80997621 actgaaaggattgaaagaggactctaaaatatcacaaatgtggaaactgcagaaagTCCTAGTTTTCAAGGGAAGCTTTAAAGGCCTAGCTTTAAATGTAAGAGG-CAAGGAATTAAACC---TTAGa--------gaggcggatgtcctgtagagctgaaactgt- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47716158 154 + 74645514 ACTGAAAGGATTGAAAGAGGACTCTAAAATATCACAAATGTGGAAACTGCAGAAAGTCCTGGTTTTCAAGGGAAGCTTTAAAGGCCTAGCTTTAAATGTAAGAGG-CAAGGAATTAAACC---TTAGA--------GAGGCGGATGTCCTGTAGAGCTGAAACTGT- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9983321 154 - 75148670 actgagaggattgaaagaggactctaaaatatcacaaatgtggaaactgcagaaagcCCTAGTTTTCAAGGGAAGCTTTAAAGGCCTAGCTTTAAATGTAAGAGG-CAAGGAATTAAACC---TTAGa--------gaggtggatgtcctgtagagctgaaactgt- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112863122 144 + 159171411 -----AA-----AAAAGAGGACCCTAAGATACCACAAATGTGGGAACTGCAGAAAGCCCTAGTTTTCAAGGGAAGCTTTAAAGGCCTAGCTTTAAATGGAAGAGT-CAAGGAATTAAAAC---TTAGA--------GAGGGGTATTCCCTGTAGAGCTGAAACTGT- i calJac3.chr5 I 334 I 282 s mm10.chr11 99573922 141 + 122082543 ----AAAAGGTTTAAAGAAACTCCTACGACATCATAAGTTTAGTAAATGCAGAACATGTGCATTTTAaaagaaagaaggaaaaa---------agaaagaaggaa-aAAGAAAACATACAGAGTTAGA--------GAGGATGTTACCCTGAAGAG-TGAAACG--- i mm10.chr11 I 4 C 0 s canFam3.chr9 39405879 148 - 61074082 ----aaagggttagaaggggatactgagatgttacagatgtaggagctgtagcaaaccc----ttggaaatgatacttt-------ttttttctgagggaagtgg-gagggaattaacac---ttagaaatttagggagggggttatcctgtagagctgaactcaga i canFam3.chr9 C 0 C 0 a score=1453475.000000 s hg38.chr17_JH159146v1_alt 167829 418 + 278131 tgttttaagagaggactggttggtc---ctggtgaccctg---gaaaggag--acaatgaagctggttcttcaagtgttgagaaaactgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctggagtgagaagtgtgacttggggcgattatcctgggatctgcttagcatacaggaagtcccaaatggagcag-----------aaggaaggaacaaatcctgccttcctattccagctttgcagttttcctctgtcaccccctagtagaaaagcctaacagaactgcggtcaaagccacagtgtgttttgcagagtA-----------------CAGAAGGGAGGCCTTGAAG-----CCGAGAAATAGGAACATAAT-GGGCACAAAGAGG---AACTTATTCTGAA-GCCCACAGCTGCCCAAGGAGATATCCTTGGATCTACTGAATC s panTro4.chr17 66286943 418 - 82630442 tgttttaagagaggactgattggtc---ctggtgaccctg---gaaaggag--acaatgaagctggttcttcaagtgttgagaaaactgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctagagtgagaagtgtgacttggggcgattatcctgggatctgcttagcatacaggaagccccaaatggagcag-----------aaggaaggaacaaatcctgccttcctattccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaactgcggttaaagccacagtgtgttttgcagagtA-----------------CAGAAGGGAGGCCTTGAAG-----CCGAGAAATAGGAACGTAAT-GGGCACAAAGAGG---AACTTATTCTGAA-GCCCACAGCTGCCCAAGGAGATATCCTTGGATCCACTGAATC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8310370 440 - 17838096 tgttttaagagaggactggttggtc---ctggtgaccctg---gaaaggag--acaatgaagctggttctacaagtgttgagaaaactgcaaactgaattcatgtgctgccatgggcaggatctgcacctgccatgggcaggatctgcacctgctggagtgagaagtgtgacttggggcaattatcctgggatctgcttagcatacaggaagccccaaatggagcag-----------aaggaaggaacaaatcctgccttcctattccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaaccgcagtcaaagccacagtgtgttttgcagagtA-----------------CAGAAGGGAGGCCTTGGAG-----CCGAGAAATAGAAACGTAAT-GGGCACAAAGAGG---AATTTATCCTGAA-GCCCACAGCTGCCCAAAGAGATATCCTTGGATCTACTGAATC i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48047351 420 - 81552678 tgttttaagagaggactggttggtc---ctggtgaccctg---gaaaggag--acaatgaagctggttctacaagtgttgagaaaactgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctggagtgagaagtgtgacttggggcgattatcctgggatctgcttagcatacaggaagccccaaatggagcag-----------aaggaaggaacaaatcctgccttcctattccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaactaccgtcaaagccacagtgtgttttgcagagtA-----------------CAGAAGGGAGGCCTTGGAG-----CCGAGAAATAGGAACGTAAT-GGGCACAAAGAGGTTCCTCTTTCTCTGAC--CCCACAGCTGCCCAAAGAGATATCCTTGGATCTACTGAATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53148371 417 + 80904711 tgttttaagagaggactggttagtc---ctggtgaccctg---gaaaggag--acaatgaagctggttctacaagtgttgagaaaaatgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctggactgagaagtgtgacttggggcgattatcctgggatctgcttagcatacaggaagccccaaatggagcag-----------aaagaaggaacaaatcccaccctcctcttccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaacaatgggcaaagtcacgctgtgttttgcagagtA-----------------CAGAAAGGAGGTCTTGGAG-----CCGAGAAATAGGAACGTAAT--GGCACAAAGCGG---AACTTATTCTGAA-GCCCACAGCTGCCCAAAGAGATATCCTTAGATCTACTGAATC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52713878 417 + 80997621 tgttttaagagaggactggttagtc---ctggtgaccctg---gaaaggag--acaatgaagctggttctacaagtgttgagaaaactgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctagactgagaagtgtgacttggggcgattatcctgggatctgcttagcgtacaggaagccccaaatggagcag-----------aaagaaggaacaaatcccaccctcctcttccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaacaatgggcaaagtcacgctgtgttttgcagagta-----------------cagaaaggaggtcttggag-----ccgagaaataggaacgtaat--ggcacaAAGCGG---AACTTATTCTGAA-GCCCACAGCTACCCAAAGAGATATCCTTAGATCTACTGAATC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47716312 417 + 74645514 TGTTTTAAGAGAGGACTGGTTAGTC---CTGGTGACCCTG---GAAAGGAG--ACAATGAAGCTGGTTCTACAAGTGTTGAGAAAACTGCAAACTGAATTCGTGTG----------------------CTGCCATGGGCAGGATCTGCACCTGCTGGACTGAGAAGTGTGACTTGGGGCGATTATCCTGGGATCTGCTTAGCATACAGGAAGCCCCAAATGGagcag-----------aaagaaggaacaaaTCTCACCTTACTCTTCCAGCTTTGCAGTTTTCCTCTGTCGCCCCCTAGTGGAAAAGCCTAACAGAACAATGGGCAAAGTCACGCTGTGTTTTGCAGAGTA-----------------CAGAAAGCAGGTCTTGGAG-----CCGAGAAATAGGAATGTAAT--GGCACAAAGGGG---AACTTATTCTGAA-GCCCACAGCTGCCCAAAGAGATATCCTTAGATCTACTGAATC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9983475 418 - 75148670 tgttttaagagaggactggttagtc---ctggtgaccctg---gaaaggag--acaatgaagctggttctacaagtgttgagaaaactgcaaactgaattcgtgtg----------------------ctgccatgggcaggatctgcacctgctggactgagaagtgtgacttggggcgattatcctgggatctgcttagcatacaggaagccccaaatggagcag-----------aaggaaggaacaaatcccaccttcctcttccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagaactgtgggcaaagtcacgctgtgttttgcagagta-----------------cagaaaggaggtcttggag-----ccgagaaataggaacgtaat-gggcacaAAGGGG---AACTTATTCTGAA-GCCCACAGCTGCCCAAAGAGATATCCTTAGATCCACTGAATC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112863548 411 + 159171411 tgtttTAagagaggactggttggtc---ctggtgaccctg---caaaggag--acaatgaagccggttctacaagtgttgagaaaactgcaaactgaattcatgtg----------------------ctgccatgggcaggatctgcacctgctggagtgagaagtgtgacttggggcgattatcttgggatctgcttagcatacaggaagaccc-aatgaagcgg-----------aaggaaggaaaaagtcccgtcctcctcttccagctttgcagttttcctctgtcaccccctagtggaaaagcctaacagagccacgggcaatgccacagtgtgttttgcagagtA-----------------CACCAGGGAAGTCTTAGAG-----CAGAGAAAGAGGAACTAAAT-GGGCACAAAGAGG---AACTTATCCTGAA-GCCCACAGTTTCCCAGAGAGATGT------AGTTACTGAATC i calJac3.chr5 I 282 C 0 s mm10.chr11 99574063 397 + 122082543 CATTTTGGGAAAGGTGTGGCAGGCTTAGCTCGTGTCATGGGCTGAAAAGAG---CAGTGGAGTTAGTTCTAT-AGAGTGGAGAGAACTACAAATGGAACCCAGGTA----------------------CTGCCAGGGCAAGGATGCGTGCCTGCTGGATCGAGGCAGCGAATctgaggtgataacgctggcaccagctgacaaaggagtaagcagaaaacagtaaag------------aggaagggacagg----accctactctgcagacggcgcggttttcctctcttgccccctagtggtcaagtctagcacagccactggcagagcaacaaagaggtttactgagtac----------------cactacaggcatctcagagattgccacagaggtcagaatg--------------gagg---agctga----gaa-aTTCA---------AGACAGTCATCCTTAGATATCCTGAATC i mm10.chr11 C 0 C 0 s canFam3.chr9 39406027 416 - 61074082 tgtttcaggaaa--actggttgg-----ctggtgactctg---agtggggtgtgcaatgaagcaggttctacacgtgttgagaaaactgcaggctgggtttagatg----------------------cttctctggatgggctctgcagctgctggagcaaacagtgttact--aggaggtaatcctgggaattgcc-agcatacaaaaagtccc-aatgaagcagaaggaaacaaaaaggaaggagcaggagccttcttcctcttc-agctttgcagttttcctctgtcactccctagtggtgaatcccgacaga--------------------gTGGTTTGCAGAGCATCACTAACCCAACTGAACAGCAGGGAGGGTATGAAG--------GGAGACAGGAACAACACCTGGCACA--GAGG---AGCTTACTCTGAAAGCCCACAGCTTCCCAAATAGACATCTTTAAATCAGTTGAACC i canFam3.chr9 C 0 I 234 a score=20088.000000 s hg38.chr17_JH159146v1_alt 168247 6 + 278131 TCCCAA s panTro4.chr17 66287361 6 - 82630442 TCACAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8310810 6 - 17838096 TCCCAA i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48047771 6 - 81552678 TCCCAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53148788 6 + 80904711 TCCCAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52714295 6 + 80997621 TCCCAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47716729 6 + 74645514 TCCCAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9983893 6 - 75148670 TCCCAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112863959 6 + 159171411 TCCCAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99574460 6 + 122082543 TCCACA i mm10.chr11 C 0 C 0 e canFam3.chr9 39406443 234 - 61074082 I a score=104565.000000 s hg38.chr17_JH159146v1_alt 168253 25 + 278131 CACCAATCTTTACTTCCAATTCCTT s panTro4.chr17 66287367 25 - 82630442 CACCAATCTTTACTCCCAATTCCTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8310816 25 - 17838096 CACCAATCTTTACTTCCAATTCCTT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48047777 25 - 81552678 CACCGACTTTTACTTCCAATTCCTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53148794 25 + 80904711 CACCAATCTTTACTTCCAGTTCCTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52714301 25 + 80997621 CACCAATCTTTACTTCCAGTTCCTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47716735 25 + 74645514 CACCAATCTTTACTTCCAATTCCTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9983899 25 - 75148670 CACCAATCTTTACTTCCAATTCCTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112863965 25 + 159171411 CACCAATCTTTACTTCCAATTCCTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99574466 22 + 122082543 CATCA---TTGACTTCTAGTTTCTT i mm10.chr11 C 0 I 2317 s canFam3.chr9 39406677 25 - 61074082 CACCATTCTTTATTTCCAGTTCCTT i canFam3.chr9 I 234 C 0 a score=247025.000000 s hg38.chr17_JH159146v1_alt 168278 76 + 278131 AACTTCATGGTCTCATcatgaa-ttttggggtcagagttgggtttgtatttctgttttttacttatgaataaactat s panTro4.chr17 66287392 76 - 82630442 AACTTCATGGTCTCATcatgaa-ttttggggtcagagttgggtttgtatttctgttttttacttatgaataaactat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8310841 76 - 17838096 AACTTCATGGTCTCATcaagaa-ttttgggatcagagttgggtttgtatttctgttttttacttatgaataaactat i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48047802 76 - 81552678 AACTTCATGGTCTTGTcatgaa-ttttggggtcagagttgggtttgtatttctgtcttttacttatgaacaaactat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53148819 76 + 80904711 AACTTCATGGTCTCATcatgaa-ttttgggatcagagttgggtttgtatttctgtgttttacttatgaacaaactat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52714326 76 + 80997621 AACTTCGTGGTCTCATcatgaa-ttttggggtcagagttgggtttgtatttctgtgttttacttatgaacaaactat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47716760 76 + 74645514 AACTTCGTGGTCTCATCATGAA-TTTTGGGGTCAGAGTtgggtttgtatttctgtgttttacTTATGAACAAACTAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9983924 76 - 75148670 AACTTCATGGTCTCGTcataaa-ttttggggtcagagttgggtttgtatttctgtttttcacttatgaacaaactat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112863990 64 + 159171411 AATTTCATGGTCTCGTCATGAATTTTTGGAGTCAGAGTTGGATTTGTATTTC-------------tgaacaaactat i calJac3.chr5 C 0 C 0 s canFam3.chr9 39406702 71 - 61074082 AATTTCATTGTCTTGTTCTGAG-TTTTGGAGCCTGAGTTGGGTTCATATTTTGGTTT-----TTACGTATAAGCTAT i canFam3.chr9 C 0 I 3033 e mm10.chr11 99574488 2317 + 122082543 I a score=2805486.000000 s hg38.chr17_JH159146v1_alt 168354 958 + 278131 tgaaccgcctttaggtttgatttcctcatctacaaaggtaaggtaacagtatctattttacaggattgatgtaagtattcaatgaaattaggttaatatgaagcttacttagcttggggtataacatacggcagtagcccccaacctttttggcacgagggactggcttcatggaagacaatttttccatggaccagggaggtgggta-ggatggttcaggatgattcaagggcattacatttattgtgcaccttatttctattattattatagtgtaatatataatgtaataattatacaactcaccataatgtagaatcaatgggagccctgagcttgttttcctgcaactagatggtcccacctgcgagtgataggagatagtgacagatcatcaggcattagagtctcataaggagcccacaacctagatccatcacatgcgcggttcacaatagggtttgcgcttctatgagaatctaatgccacagctgatctgacaggagacagagct----caagcagtaatgcttctggccagtggctcacctcctgctgtgctgcctggttcctaataggccac-aactggtaccggtccactgcccaggggttgggggcccctgCCTtaatagattgctcctgtgcacatccagccttatagtttggtgggtagataaca--cccagctaagcatgagaagctcaggttgcacagtcattccattttttccagttcttgcccactagcaagccggaagtagtttatcaaaaggacagtagttattttcagaggagggcatggattttctccaaaaccttataagtctgacctgtaattcttctattgatgcttgccagaggctatatacggtgagcgtgtgttttccatagacacttcaaatatggttggatgtgctggattataaggctcaaatgaaatagcagcttgaattatagctgggact s panTro4.chr17 66287468 958 - 82630442 tgaactgcctttaggtttgatttcctcatctacaaaggtaaggtaacagtatctattttacagaattgatgtaagtattcaatgaaattaggttaatatgaagcttacttagcttggggtatagcatacggcagtagcccccaacctttttggcatgagggactggcttcatggaaggcaatttttccatggaccagggaggtgggta-ggatggttcaggatgattcaagggcattacatttattgtgcaccttatttctattattattatagtgtaatatataatgaaataattatacaactcaccataatgtagaatcaatgggagccctgagcttgttttcctgcgactagatggtcccatctgcaagtgataggagatagtgacagatcatcaggcattagagtctcataaggagcccacaacctagatccctcacatgcgcggttcacaatagggtttgcgcttctatgagaatctaatgccacagctgatctgacaggagacagagct----caagcagtaatgcttctggccggtggctcacctcctgctgtgctgcctggttcctaataggccac-aactggtaccggtccactgcccaggggttgggggcccctgCCTtaatagattgctcctgtgcacatccagccttatagtttggtgggtagataaca--cccagctaagcatgagaagctcaggttgcatagtcattccattttttccagttcttgcccactagcaagctggaagtagtttatcaaaaggacagtagttattttcagaggagggcatggattttctccaaaaccttataagtctgacctgtaattcttctattgatgcttgccagaggctatatacagtgagcatgtgttttccatagacacttcaaatatggttggatgtgctggattataaggctcaaacgaaatagcagcttgaattgtagctgggact i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8310917 957 - 17838096 tgaaccgcctttaggtttgagttcctcatctacaaaggtaatgtaacagtatctattttacaggattgatgtaagtattcaatgaaattaggttaatatgaagcttacttagcttggggtgtagcatatggca-TAgcccccaaactttttggcacgagggaccggcttcatggaagacaatttttccatggagcagggaggtgggtagggatggttcaggatgattcaagtgcgttacatttattgtgcactttatttctattattattatagtgtaatatagaatgagataattatacaactcgccataatgtagaattgatgggagccctgagcttgttttcctgcaactagacggtcacacctgcgagtgataggagacggtgacacatcatcaggcattagagtcttataaggagcccacagcctagatccctcacatgcatggttcacaacagggtttgcgcttctgtgagaatgtaatgccaccgctgatctgacaggagacagagct----caagcagtactgcttctggccggtggctcacctcctgctgtgctgcctggttcctaataggccac-aactggtaccagtccactgcccaggggttgggggcccctgCCTtaatagattgctcctgtgcacatccagccttatagtttggtgggtagataaca---ccagctaagcatgagaagctcaggttgcacagtcattccattttttccagttcttgcccactagcaagccggaagtagtttatcaaaaggacagtagttattttcagaggagggcatggattttctccaaaaccttataagtctgacctgtaattcctctattgatgcttgccagaggctacatacagtgagcatgtgttttccatagacacttcaaatatggttggatatgctggcttataaggctcaaatgaaatagcagcttgaattgtagctgggact i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48047878 957 - 81552678 tgaactgcctttaggtttgatttcctcatctacaaaggtaaggtaacagtatctattttacaggattgatgtaagtattcaatgaaattaggttcatatgaagtttac-taacttggggtatagcatacggcagtggcccccaacctttttggcacgagggaccagcttcatggaagagaatttttccatggaccgggtaggtgggta-ggatggttcagaatgattcaagtgcattacatttattgtgcatcttatttctattattattatagtgtaatatataatgaaataattatacagctcaccatgatgtagaatcgatgggagccctgagcttgttttcctgcaactagatgatcccatctgcgagtgataggagatagtgacagatcatccggcattagagtctcataaggagcccacaacctagatccctcacgtgcgtcgttcacaatagggtttgtgcttctgtgagaatctaatgccaccgctgatctgacaggagacaaagct----caagcagtaatgcttctggccggtggctcacctcctgctgtgctgcctggttcctaataggccac-aactggtactggtccactgcccatgggttgggggcccctgccttaatagattgctcctgtgcacatccagccttatagtttggtgggtagataaca--cccagctaagcatgagaagctcaggttgcacagtCATTCCATTTTTTCCAGGTGTTgcccaccagcaagccggaagtagtttatcaaaaggacagtagttattttcagagaaggtcatggattttccccaaaaccttgtaagtctgacctgtaattcttctattgatgcttgccagaggctacatacagtgagcatgtgttttccacagacacttctaatatggttggatgtgctggcttgtaaggctcaaatgaaatagcagcttgaattgtagttgggact i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53148895 962 + 80904711 tgaactgcctttaggtttgatttcctcatctatgaaggtaaggtaacagtatctattttacaggattgatgtaagtactcaaagaaattaagttcatatgacacttacttagcttgggatatagcatacagcagtggcccccaacctttttggcatgagggaccggcttcaaggaagacaatttttccatggactggggaggtcagtagggttggttcaggatgagtcaagtgcattacatttattgtgcactttatttctattattattatagtgtaacatagaatgagataattatacaactcaccatcgtgtagaatcgatgggagccctgagcttgttttcctgcaactagatggt-ccacctgcgagtgataggagacagtgacatatcatcaggcattagagtctcataaggagcccacagcctagatccctcacacacacggttcacaatagggtttgtgcttctgtgaaaatctcatcccactgctgatctgacaggagacagagctcaggcaggcagtaatgcttctggtcggtggcttacctcctgctgtgctgcctggttcctaacaggccacggactggtaccggtctactgcccaggggttggggacccttgCCTtaatagattgctcctatgcacatccagccttatagtttggtgggtgaataaca--cccagttaagcatgagaagctcaggttgcacggtcattccattttttctagttcttgcccactagcaagctggaagtagtttattaaaaggacggtagttattttcagaggagggcatggattttctccaaaaccttagaagtctgacctataattcttctattgctgcttgccagaggctacatacagtgagcctgtattttccatagacacttcaaatacgattggatgtgctgg-ttataaggctcaaatgaaatagcagcttgaattgtagctgggact i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52714402 959 + 80997621 tgaactgcctttaggtttgatttcctcatctatgaaggtaaggtaacagtatctattttacaggattgatgtaagtactcaaagaaattaagttcatatgacacttacttagcttgggatatagcatacagcagtggcccccaacctttttggcatgagggaccggcttcaaggaagacaatttttccatggactggggaggtcagtagggttggttcaggatgagtcaagtgcattacatttattgtgcactttatttctattattattatagtgtaacatagaatgagataattatacaactcaccatcgtgtagaatcgatgggagccctgagcttgttttcctgcaactagatggtcccacctgcgagtgataggagacagtgacatatcatcaggcattagagtctcataaggagcccacagcctagatccctcacacacacggttcacaatagggtttgtgcttctgtgaaaatctaatcccactgctgatctgacaggagacagagct----caggcagtaatgcttctggtcggtggcttacctcctgctgtgctgcctggttcctaacaggccacggactggtaccggtctactgcccaggggttggggacccttgccttaatagattgctcctatgcacatccagccttatagtttggtgggtgaataaca--cccagttaagcatgagaagctcaggttgcacggtcattccattttttctagttcttgcccactagcaagctggaagtagtttattaaaaggacggtagttattttcagaggagggcatggattttctccaaaaccttagaagtctgacctataattcttctattgctgcttgccagaggctacatacagtgagcctgtattttccatagacacttcaaatacgattggatgtgctgg-ttataaggctcaaatgaaatagcagcttgaattgtagctgggact i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47716836 959 + 74645514 TGAACTGCCTTTAGGTTTGATTTCCTCATCTACGAAGGTAAGGTAACAGTATCTATTTTACAGGATTGATGTAAGTACTCAATGAAATTAAGTTCATATGACACTTACTTAGCTTGGGATATAGCATACAGCTGTggcccccaacctttttggcatgaGGGACTGGCTTcaaggaagacaatttttccatggactggggagGTCAGTAGGGTTGGTTCAGGATGagtcaagtgcattacatttattgtgcactttatttctattattattatagtgtAACATAGAATGagataattatacaactcaccatcgTGTAGAATCgatgggagccctgagcttgttttcctgcaactagatggtcccaccTGCGAGTGATAGGAGACAGTGAcatatcatcaggcattagagtctcataaggagcccacagcctagatccctcacatgcatggttcacaatagggtttgtgcttctgtgagaatctaatcccactgctgatctgacaggagacagagct----caggcagtaatgcttctGGTCGgtggctcacctcctgctgtgctgcctggttcctaacaggccacggactggtaccGGTCCActgcccaggggttggggacccttgCCTTAATAGATTGCTCCTATGCACATCCAGCCTTATAGTTTGGTGGGTGGATAACA--CCCAGTTAAGCATGAGAAGCTCAGGTTGCACAGTCATTccattttttctagttcttgcCCACTAGCAAGCTGGAAGTAGTTTATTAAAAGGACAGTAGTTATTTTCAGAGGAGGGCATGGATTTTCTCCAAAACCTTAGAAGTCTGACCTATAATTCTTCTATTGCTGCTTGCCAGAGGCTACATACAGTGAGCCTGTATTTTCCATAGACACTTCAAATACGGTTGGATGTGCTGG-TTATAAGGCTCAAATGAAATAGCAGCTTGAATTATAGCTGggact i papAnu2.chr16 C 0 I 326 s chlSab2.chr16 9984000 959 - 75148670 tgaactgcctttaggtttgatttcctcatctacgaaggtaaggtaacagcatctattttacaggattgatgtgagtattcaatgacattaagttcatatgacacttacttagcttgggatatagcatacagcagtggcccccaacctttttggcatgagggaccggcttcaaggaagacaatttttccatggactggggaggtgagtagggttggttcaggatgagtcaagtggattacatttattgtgcactttatttctattattattatagtgtaacatagaatgagataattatacaactcaccatcacgtagaatcgatgggagccctgagcttgttttcctgcaactagataatcccacctgcgagtgataggagacagtgacatatcatcaggcattagagtctcataaggagcccacagcctagatccctcacatgcacggttcacaatagggattgtgcttctatgagaatctaatcccactgctgatctgacaggagacagagct----caggcagtaatgcttctggtcggtggctcacctcctgctgtgctgcctggttcctaacaggccacggactggtactggtccatggcccaggggttggggccccctgccttaatagattgctcctatgcacatccagccttatagtttggtgggtagataaca--cccagttaaccatgagaagctcaggttgcatggtcattccattttttctagttcttgcccactagcaagctggaagtagtttattaaaaggacagtagttattttcagaggagggcatggattttctccaaaaccttggaagtctgacctataattcttctattgctgcttgccagaggctacatacagtgagcctgtattttccatagacacttcaaatacagttggatgcactgg-ttataaggctcaaatgaaatagcagcttgaattgtagctgggact i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112864054 921 + 159171411 tgaaccccgtttaggttttatttcctcatctacaaaggtaaggtggcagtatctattttacaggattgatgtaagtattcagtgaaattaggttcatatgaagcttacttagcttagggtatggcatatggcagaggtccccaa-cttttccacatgagggaccagcttcatggaagacagtttttccatggaccagggaggtgaatggggatgcttcaggatgattcaagtgcattacagttattgtgcactttatttctgttattattgtagtgtaatttacaatgacataattatataactccccataatgtagaatcaatgggagccctgaacttatttttctgcaactagacagccccatctgggagtaacaggagacagtgacagatcatcaggcattagagtctcataaggagcccacaacctagatccctcatatgcatggttcacaatagggtttgcgctcctctgagaatctaatgccaccactgatctgacaggacgttgagtt----caggcagtaatgttcctggccagtggctcacctcctgctgtgctgcctggttcctaacaggccatggactggtatcaatccactgcccagggcttaggggcccctgCCTTA----------------------------------------GGTAGATAACAACCTCTGCTAAGCAGGAGAAGCTCAGGTTGCACAATCATTCTATTTTTTCCAGTTCTTgcccactagcaagccagaagtagtttatcaaaaggagagcaattattttcagaagagggcatggattttctccagaacgttataagtctgacctgtaatttttctactgatgcttgccagagtctacacacagtgagcatgtattttccatagatacttcaaatatcgctggatgtgctggcttataaggctcaaatgaaataacagcctgaattgtagcTGGCtcc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I a score=54859.000000 s hg38.chr17_JH159146v1_alt 169312 41 + 278131 tTTC-TTTCTTTCTTCttcttctttttttttttttttttttt- s panTro4.chr17 66288426 36 - 82630442 tTTC-TTTCtttcttctt-----ttttttttttttttttttt- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8311874 32 - 17838096 tTTCttttctttcttctt----------cttttttttttttt- i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48048835 34 - 81552678 tTTC-tttctttcttctt-------cttcttctttttttttt- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53149857 36 + 80904711 tTTC-TGTTCtttttctt-----tctttctttcttttttttt- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52715361 36 + 80997621 tTTC-TGTTCtttttctt-----tctttctttctttcttttt- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47718121 36 + 74645514 ttct-ttctttctttctt-----tctttctttctttctttct- i papAnu2.chr16 I 326 C 0 s chlSab2.chr16 9984959 35 - 75148670 tTTC-TTttcttgttctt-----tctttcttt-ttttttttt- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112864975 42 + 159171411 ttcc-ttccttccttccttcctctcttacttacttacttcctt i calJac3.chr5 C 0 I 1779 e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I a score=3133074.000000 s hg38.chr17_JH159146v1_alt 169353 1314 + 278131 t---tatggagtcttgctctgtcacccaggctggagtgcagtggcgtgatccgggctcactgcaagctctgtctcccaggttcaagcaattctcctgcctcagcctctcaagtagctgggattacaggtgcgtgccaccacgcccATagctgggacttttctttagagccttctcttgctcttg----ccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacacactcaaatatggcatatgttgaccccaaaatacaaaaatgcccaccaagagttgtgcctttttagctgaagttagcttaaaatacagcagtttttctttcaccttggaaaggatatgtcagtgtgttccagacaatttgacttcaagaaacttcattgaggctgtgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgttacttcctgctcatcaaatgtcaccagcaagatgtcattgatgtagtggactgttatgatgttgtatggaaagtcaagatgattaatagcatgagtatattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaaggttactgttggccatgccaggtcaaagaaaagtacttctggctgccctgatacagagaaaaatgcattttcttgtcaatagctgcataccaggtgccaggggctgtcttaatttgctccattcaagatacaacatttgggacatcatctccagttgaggtcatcacctgaattcatttaa---aataataatacataattgttctgttatactccagggtttatctgctttgtctacgggataaacaagctcaatggggagatggtaggtatcacaacccagctttttccaagtctctgataatggcacccatcttcaaaattttcccatcaatatagtatta-ttttttatttactattcttgtatcaa-ggaaacttctgggggcttcaacttggcccttttttaccaaatgagctttattcctca-------gtgccaatgtggggattctgccagttgtcaaacatgattattccaattatacattcacaaattggggaattgtcctgcaggcccactgggtccactgtgattcaaacgtagaccaagattctaactatcatctggccaccaaaagtcaccac----ttttttttggaggaccagtggcatttgggtctctagaaattagtgtcaacttagtgtctaatagttcctGTGATTGGCAGAATTTCAGCCTCCAAGGCCTCTGAGCCCTT----GT s panTro4.chr17 66288462 1314 - 82630442 t---aatggagtcttgctctgtcacccaggctggagtgcagtggcgtgatccgggctcgctgcaagctctgtctcccaggttcaagcaattctcctgcctcagcctctcaagtagctgggattacaggtgcgtgccaccacgcccATagctgggacttttctttagagccttctcttgctcttg----ccctaaaacccagcagcattttgagttattcattaagtgggttgaaataacacactcaaatatggcatatgttgaccccaaaatacaaaaatgcccaccaagagttgtgcctttttagctgaagttagcttaatatacagcagtttttctttcaccttggaaaggatatgtcagtgtgttccagacaattggacttcaagaaacttcactgaggctgtgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgttacttcctgctcgtcaaatgtaaccagcaagatgtcattgatgtagtggactgttatgatgttgtatggaaagtcaagatgattaatagcatgagtgtattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaaggttactgttggccatgccaggtcaaagaaatgtacttctggctgccctgatacagagaaaaatgcattttcttgtcaatagctgcataccaggtgccaggggctgtcttaatttgctccattcaagatacaacatttgggacatcatctccagttgaggtcatcacctgaattcatttaa---aataataatacataactgttctgttatactccagggtttatctgctttgtccacgggataaacaagctcaatggggagatggtaggtatcacaacccagctttttccaagtctctgataatggcacccatgttcaaaattttcccatcaatatagtatta-ttttttatttactattcttgtatcaa-ggaaacttctgggggcttcaacttggcccttttttaccaaatgagctttattcctca-------gtgccaacgtggggattctgccagttgtcaggcatgattattccaattatacattcacaaattggggaattgttctgcaggcccactgggtccactgtgattcaaacatagaccaagattctaactatcatctgaccaccaaaagtcaccac----ttttttttggaggaccagtggcatttggttctctagaaattagtgtcaacttagtgtctaatagttcctGTGATTGGCAGAATTTCAGCCTCCAAGGCCTCTGAGCCCTT----GT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8311906 1311 - 17838096 t---aatggagtcttgctctgtcacccaggctggagtgcagaggagtgatctgggctcactgcaagctctgcctcccaggttcaagcaattctcctgcctcagcctctcaagtagctgggattacaggtgcgtgccaccacgcccATagctgggacttttctttagagccttctcttgctcttgtcccccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacaaactcatatatggtatatgttgaccccaaaatacaaaaatgcccaccaagagttgtgcctttttagctgaagttagcttaaaatata------tatctttcaccttggaaaggatatatcagtgtgttccagacaattggactccaagaaacttcattgaggaggtgagctttttaa-ttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgttacttcctgctcgtcatatgtaaccagcatgatgtcattgatatagtggactgttatgatgttgtatggaaagtcaagatgattaataccatgagtatattaggacagagagcaggatagttgacgtagccctgaggcaatgcttggaaggttactgttggccatgccaggtcaaagaaatgtacttctggttgccctgatacagagaaaaatgcattttcttgtcaatagctgcataccaggtgccaggggctgtcttaatttgctccattcaagatacaacatttggaacatcatctccagttgaggtcaccacctgaattcatttaa---aacaataatacataattgtttggttatactccagggtttatctgctttgtccacgggataaacaagctcaatggggagatggtaggtatcacaacccagctttttccaagtctctgataatggcacccatcttcaaaattttcccatcaatatagtatta-ttttttatttactattcttgtatcaagggaaacttctgggggcttcaacttggttc-tttttaccaaatgagctttattcctca-------gtgccaatgtggggattctgccagctgtcaagcatgattattccaattatacattcacaaattgtggaattgttctgcaggcccactgggtccactgtgattcaaatgtagaccaagattctaactatcatctggccatcaaaagtcaccac----ttttttttggaggaccagtggcatctgggtctctagaaattagtgtcaacttaatgtctaatagttcctGTAATTGGCAGAATTTCAGCCTCCAAGGCCTCTGAGCCCTT----GT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48048869 1317 - 81552678 t---aatggagtcttgctctgtcacccaggctggagtgcagtggcatgatccgggctcactgcaagttctgcctcccaggttcaagcaattctcctgcctcagtctctcaagtagctgggattacaggtgcgcgccaccacgcccATagctgggacttttctttagagccttctcttgctcttgtcccccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacacactcaaatatggtatatgttgaccccaaaatacaaaaatgcccaccaagagttgtgcctttgtagccgaagttagcttaaaatacagcagtttttctttcaccttggaaaggatatatcagtgtgttccagacaattggactccaagaaacttcattgaggtgacgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgttacttcctgctcatcaaatgtaaccagcatgatgtcattgatgtagtggactgttatgatgttgtatggaaagtcaagatgattaataccatgagtatattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaaggttactgttggccatgccaggtcaaagaaaagtacttctggttgccctgatacagagaaaaatgcattttcatgtcaatagctttatatcaggtgccagggactgtcttaatttgctccattcaagatacagcatttgaaacatcatctccagttgaggtcaccacctgacttcatttaa---aataataatacatagttgttctattatactccggggtttatctgctttgtccaagagataaacaagctcaatggggagatggtaggtatcacaactcatctttttccaagtctctgataatggcacccatcttcaaaattttcccatcaatataatatta-ttttttatttactattcttgtatcaa-ggaaacttctgggggcttcaacttggccc-tttttaccaaatgagctttattcctca-------gtgccagtgtggggattctgccagttgtcaagcatgattattccaattatgcattcacaaattggggaattgttctgcaggcccactgggtccactgtgattcaaatgtagaccaagattctaactatcatctggccaccaaatgtcaccac----ttttttttggaggcccaatggcatttgggtctctagaaatcagtgtcaacttagTATCTAATAGTTCCtgtgattggcagaatttcagcctccaaggcctctgagccctt----gt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53149893 1328 + 80904711 tta-aatggagtcttgctctgtcgcccaggctggagtgcagtggcatgatctgggctcattgcaacctccgcctaccaggttcaagcaattctcctgccttagcctcccaagtagctgggattacaggtgcccgccaccacacccATagctgggactt---tttagagccttctcttgctcttgtcccccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacacactcaaatatggtatatattgacccccaaatacaaaaatgcccaccaagagttatgcctttttagttgaagttagcttaaaatacagcagtttttctttcaccttggaaaggatatctcaatatgttccagacagttggactccaggaaacttcactgaggtgatgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgtcacttcctgctcatcaaatgtaaccagcatgatgtcatagatgtagtggactgctatgatgttgtgtggaaagtcaagatgattaatatcatgagtatattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaatgttactgttggccatgccagctcaaagaaaattacttctggttgccctgatacagagaaaaatgcattttcatgtcaatagctgcataccaggtgccaggggttgtcttaatttgctccattcaagatacaacatttgggacatcttctccggttgaggtcaccacctgaattcatttaagataataataatatataattgttctgttatactccagggtttatctgctttgtccataggataaacaagctcagtggggagatggtaggtatcacaacccagctttttccaagtctctgataatggaacccatcttcaaaattttcccatcaatatagtactatttttttatttaccattcttgtatcaagggaaactcctgggggcttcaacttgaccc-ctttt-ccaaataagccttattcctcaggccagtgtgccaatgtggggattctgccagttgtcaaacatgataattccaattatactttcacaaattgggtgattattctgcaggcccactgggtctactgtgattcagatgtagaccaagattctaactatcatctggccaccaaaa-tcaccac--ttttttttttggagggccagtggcatttgggtctctagaaattagtgtcaacttagtgtctaatagttcctgtgattggcagaatttcagcctccaagacctctgagcccttgt---- i rheMac3.chr16 C 0 I 19 s macFas5.chr16 52715397 1326 + 80997621 tta-aatggagtcttgctctgtcgcccaggctggagtgcagtggcatgatctgggctcattgcaacctccgcctaccaggttcaagcaattctcctgccttagcctcccaagtagctgggattacaggtgcccgccaccacacccATagctgggactt---tttagagccttctcttgctcttgtcccccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacacactcaaatatggtatatattgacccccaaatacaaaaatgcccaccaagagttatgcctttttagttgaagttagcttaaaatacagcagtttttctttcaccttggaaaggatatctcaatatgttccagacagttggactccaggaaacttcactgaggtgatgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgtcacttcctgcccatcaaatgtaaccagcatgatgtcatagatgtagtggactgctatgatgttgtgtggaaagtcaagatgattaatatcatgagtatattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaaggttactgttggccatgccagctcaaagaaaagtacttctggttgccctgatacagagaaaaatgcattttcatgtcaatagctgcataccaggtgccaggggttgtcttaatttgctccattcaagatacaacatttgggacatcttctccggttgaggtcaccacctgaattcatttaagataataataatatataattgttctgttatactccagggtttatctgctttgtccataggataaacaagctcagtggggagatggtaggtatcacaacccagctttttccaagtctctgataatggaacccatcttcaaaattttcccatcaatatagtactatttttttatttaccattcttgtatcaagggaaactcctgggggcttcaacttgaccc-ctttt-ccaaataagccttattcctcaggccagtgtgccaatgtggggattctgccagttgtcaaacatgataattccaattatactttcacaaattgggtgattattctgcaggcccactgggtctactgtgattcagatgtagaccaagattctaactatcatctggccaccaaaa-tcaccac--ttttttttttggagggccagtggcatttgggtctctagaaattagtgtcaacttagtgtctaatagttcctgtgattggcagaatttcagcctccaagacctctgagccctt------ i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47718157 1330 + 74645514 ttcttatggagtcttgctctgtcacccaggctggagtgcagtggcatgatctgggctcattgcaacctccgcctaccaggttcaagcaattctcctgcctcagcctcccaagtagctgggattataggtgcccgccaccacacccatagCTGGGACTT---TTTAGAGCCTTCTCTTGCTCTTATCCCCCCTAAAACCTAGCAGCATTTTGAGTTATTCATTAAGTGGGTTGAAATAACACACTCAAATATGGTATATATTGACCCCCAAATACAAAAATGCCCACCAAGAGTTGTGCCTTTTTAGTTGAAGTTAGCTTAAAATACAGCAGTTTTTCTTTCACCTTGGAAAGGATATCTCAATATGTTCCAGACAGTTGGACTCCAGGAAACTTCACTGAGGTGAtgagctttttaatttttgtagagtttGTTTCTTGCCCTGGAGTTCATTAATGTTTTACCAAGTCCTCTAAGGTACTTGTCACTTCCTGCTCATCAAATGTAACCAGCATGATGTCATAGATGTAGTGGACTGCTATGATGTTGTGTGGAAAGTCAAGATGATTAATATCATGAGTATATTAGGACAGAGAGCAGGATAGTTGACATAGCCCTGAGGCAATGCTTGGAATGTTACTGTTGGCCATGCCAGGTCCAAGAAAAGTACTTCTGGTTGCCCTGATacagagaaaaatgcattttcatgTCAATAGGTGCATACCAGGTGCCAGGGGTTGTCTTAATTTGCTCCATTCAAGATACAACATTTGGGACATCTTCTCCGGTTGAGGTCACCACctgaattcatttaaaataataataatatataattgttcTGTTATACTCCAGGGTTTATCTGCTTTGTCCATAGGATAAACAAGCTCAGTGGGGAGATGGTAGGTATCACAACCCAGCTTTTTCCAAGTCTCTGATAATGGAACCCATCTTCAAAATTTTCCCATCAATATagtactatttttttatttaccatTCTTGTGTCAAGGGAAACTCCTGGGGGCTTCAACTTGACCC-CTTTT-CCAAATGAGCCTTATTCCTCAGGCCAGTGTGCCAATGTGGGGATTCTGCCAGTTGTCAAACATGATAATTCCAATTATACTTTCACAAATTGGGTGATTATTCTGCAGGCCCACTGGGTCTACTGTGATTCAGACATAGACCAAGATTCTAACTATCATCTGGCCACCAAAAgtcaccacttttttttttttggagggccAGTGGCATTTGGGTCTCTAGAAATTAGAGTCAACTTAATGTCTAATAGTTCCTGTGATTGGCAGAATTTCAGCCTCCAAGGCCTCTGAGCCCTT------ i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9984994 1329 - 75148670 tta-aatggagtcttgctctgtcgcccaggctggagtgcagtggcatgatctgggctcattgcaacctccacctaccaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggtgcccaccaccacaccTATagctgggactt---tttagagccttctctggctcttgtcccccctaaaacctagcagcattttgagttattcattaagtgggttgaaataacacacccaaatatgatatatattgaccccaaaatacaaaaatgcccaccaagagttgtgcctttttagctgaagttatcttaaaatacagcagtttttttttcaccttggaaaggatatctcaatatgttccagacaattggactccaggaaacttcactgaggtggtgagctttttaatttttgtagagtttgtttcttgccctggagttcattaatgttttaccaagtcctctaaggtacttgtcacttcctgctcatcaaatgtaaccagcatgatgtcatagatgtagtggactgctatgatgttgtatggaaagtcaagatgattaataccatgagtatattaggacagagagcaggatagttgacatagccctgaggcaatgcttggaaggttactgttggccatgccaggtcaaagaaaagtacttctggttgccctgatacagagaaaaatgcattttcatgtcaatagctgcataccaggtgccaggggttgtcttaatttgctccattcaagatacaacatttgggacatcttctctggttgaggtcaccacctgaattcatttaaaataataataatatatcattgttctgttatactccagggtttatctgctttgtccataggataaacaagttcagtggggagatggtaggtatcacaacccagctttttccaagtctctgataatggaacccatcttcaaaattttcccatcaatatagtactatttttttatttaccattcttgtatcaagggaaactcctgggggcttcaacttgaccc-ctttt-ccaaataagccttattcctcaggctagtgtgccaatgtggagattctgccagttgtcaaacatgatcattccaattatactttcacaaattgggtgattattctgcaggcccactgggtccactgtgattcagatgtagaccaagattctaactatcatctggccaccaaaagtcaccac--ttttttttttggagggccagtggcatttgggtctctagaaattagtgtcaacttagtgtctaatagttcctgtgattggcagaatttcagcctccaaggcctctgagccctt--gt-- i chlSab2.chr16 C 0 I 19 e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I e calJac3.chr5 112865017 1779 + 159171411 I a score=8620.000000 s hg38.chr17_JH159146v1_alt 170667 9 + 278131 GTCATGACC s panTro4.chr17 66289776 9 - 82630442 GTCATGACC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8313217 9 - 17838096 GTCATGACC i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48050186 9 - 81552678 gtcatgacc i nomLeu3.chr19 C 0 I 10 s macFas5.chr16 52716723 8 + 80997621 gtcatgac- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47719487 8 + 74645514 GTCATGAC- i papAnu2.chr16 C 0 C 0 e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I e calJac3.chr5 112865017 1779 + 159171411 I e chlSab2.chr16 9986323 19 - 75148670 I e rheMac3.chr16 53151221 19 + 80904711 I a score=3982.000000 s hg38.chr17_JH159146v1_alt 170676 8 + 278131 CAAGGTCA s panTro4.chr17 66289785 8 - 82630442 CAAGTTCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8313226 8 - 17838096 CAAGGTCA i ponAbe2.chr17_random C 0 C 0 s macFas5.chr16 52716731 8 + 80997621 catggcta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47719495 8 + 74645514 CATGGCTA i papAnu2.chr16 C 0 C 0 e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I e calJac3.chr5 112865017 1779 + 159171411 I e chlSab2.chr16 9986323 19 - 75148670 I e rheMac3.chr16 53151221 19 + 80904711 I e nomLeu3.chr19 48050195 10 - 81552678 I a score=4230.000000 s hg38.chr17_JH159146v1_alt 170684 3 + 278131 tgt s panTro4.chr17 66289793 3 - 82630442 tgt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8313234 3 - 17838096 tgt i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 33499234 3 + 81552678 tgt i nomLeu3.chr19 n 10 C 0 s macFas5.chr16 52716739 3 + 80997621 tgt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47719503 3 + 74645514 TGT i papAnu2.chr16 C 0 C 0 e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I e calJac3.chr5 112865017 1779 + 159171411 I e chlSab2.chr16 9986323 19 - 75148670 I e rheMac3.chr16 53151221 19 + 80904711 I a score=141940.000000 s hg38.chr17_JH159146v1_alt 170687 159 + 278131 accttcaaccctagggtcagtagctgcttcctgtagttgctacttccatgttcaaataattggcatggattttgtctcctcactagatgctgactgataGAAAAGTTGTTACCAGGAGTGGTCCTGGAAAGTAGACCTTCATAGATGGGACTTGGGGAT s panTro4.chr17 66289796 159 - 82630442 accttcaaccctagggtcagtagctgcttcctgtagttgctaCttccatgttcaaataattggcacggattttgtctcctcactagatgctgactgataGAAAAGTTGTTACCAGGAGTGGTCCTGGAAAGTAGACCTTCATAGATGGGACTTGGGGAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8313237 159 - 17838096 accttcaaccctagggtcagtagctgcttcctgtagttgctacttccatgTTCAAATAATTGGCATGGATTTTGTCTCCTCACTACATGCTGACTGATGGAAAAGTTGTTACCAGGAGTGGTCCTGGAAAGTAGATCTTCATAGATGGGACTTGGGGAT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 33499237 159 + 81552678 tccttcaaccctagggtcagtagctgcttcctgtagttgctacttccatgttcaaataattggcatggattttgtctcctcactagatgctgactgataGAAAAGTTGTTACCAGGAGTGGTCCTGGAAAGTAGACCTTCATAGATGGGACTTGGGGAT i nomLeu3.chr19 C 0 T 54493 s papAnu2.chr16 26922737 159 - 74645514 tccttcaACCCTTGGGTCAGTAGCTGCTTCCTGTAGTTGCTACTTCCATGTTCAAATAATTGGCATGGATTTTGTCTCCTCATTAGGTGCAGACTGACAGAAAAGTTGTTACCAGGAGTGGTCCTGGAAAATCGACCTTCATAGATGGGAGTTGGGGAT i papAnu2.chr16 T 76564 n 0 e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I e calJac3.chr5 112865017 1779 + 159171411 I e chlSab2.chr16 9986323 19 - 75148670 I e macFas5.chr16 52716742 0 + 80997621 C e rheMac3.chr16 53151221 19 + 80904711 I a score=3684.000000 s hg38.chr17_JH159146v1_alt 170846 13 + 278131 GTTATGTAGCATG s panTro4.chr17 66289955 13 - 82630442 GTTATGTAGCATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8313396 13 - 17838096 GTTATGTAGCATG i ponAbe2.chr17_random C 0 C 0 e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I e calJac3.chr5 112865017 1779 + 159171411 I e chlSab2.chr16 9986323 19 - 75148670 I e papAnu2.chr16 26922896 0 - 74645514 I e macFas5.chr16 52716742 0 + 80997621 C e rheMac3.chr16 53151221 19 + 80904711 I e nomLeu3.chr19 33499396 54493 + 81552678 T a score=1808.000000 s hg38.chr17_JH159146v1_alt 170859 2 + 278131 TC s panTro4.chr17 66289968 2 - 82630442 TC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8313409 2 - 17838096 Tc i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48050205 2 - 81552678 tc i nomLeu3.chr19 I 10 C 0 s macFas5.chr16 52716742 2 + 80997621 tt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47719506 2 + 74645514 TT i papAnu2.chr16 C 0 C 0 e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I e calJac3.chr5 112865017 1779 + 159171411 I e chlSab2.chr16 9986323 19 - 75148670 I e rheMac3.chr16 53151221 19 + 80904711 I a score=5184759.000000 s hg38.chr17_JH159146v1_alt 170861 2174 + 278131 Tgctacataacaaaaggga--------------catttcaaatgtaattaaggttactaatcagtggacttcaagatagtgacaatagcctgaattatccaggtgtgtccagtgtaattatatgtgccgttaaaagcggaaca-tttttttcccagctgacagcagaagaggatattggagagggaagtgggggtagggtaggaaatc--agagattc-aa---agtataacatgaacttgacctaccactgctggtttgaagatggagg--------------------------ggactatatgaaaaCATGAGaaagaaatgaatcctgccaacaaaacaattcctggaagaagactgagcctcagatgaggaccagctgatactttggttttattcctgtaagaccaagagcaaagaatctcaccatgccctgctgtactcctgacccac-aaaatctgtgagataatacatttgtgttgttttaggttgccaattttatggtaatttgttagaggagcatttggaaactaatacaATCCCCTGAATAtctgagtatagatatcaaccaacattttaataggcttccccttaatttcattccaaggataccataataaactatctactgacagatccctgtgggtcaaagcattctggctaccactatatctctgtttctctttacagtgaATGTAcagttgtctctcagtgtactgggtgggggggattggttccaggcctcctgcatatacaaaatctgcacatattcaagtctcacgctcagccctgtggagtgtttatgaaaagttggccctccatatatgcaagttttgcatcttgagaatactgtatttcaatcagtgtttggttgaaaaaaa-tctgcgtgtaagtggacccatgtaattcaaacAGGCCAACTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAGCTTCCAGTGCTCTGAGATCCTATTATCTCTACTGAAATCAA--GGAGAGGGAGTATCTCCACCATCATATCTAGGCTACTGCAAGAGTcccccatgaatataaaatccttgagtgaaggcagttttctctgggacttttgggaagttacttggtgctgcgtatgtgtgcagtgtaacatgataaatcttctccaaaattcctatctccttaagtctttgattcctttcctttatgttatgtcaaaaaagtcctgacatctgagcatcagtaaacataggccatggttgatttcaagtttaaacaaacaaatcaaataattctttgtacaaaaaatttacatccagaatctttaagtgtaaccacgtcatttaggcattccatataagcaacttccccaagtgagactataagag--------tgtcatattccatcttctttggtttactacccc-aaaaatacacttacacatattcctcaggtttctgctaatatataataatacaataatgttttttaaaaatacacttta-tttccagagtagttttgagttcacagcaaaatcga-------gcacacaggtttcctatataccc--tgttttcacacatgtgtagcttcccccattatcagcatcccccactagagtgataca-ttttttacaactgataaatctacattgacacataatcacccagagtccatagttttcatttgggttcacttttgttgttgttcattttatgggtttggataaatacataatttgtacccaccttatagtatcatacagaatagttccactgcgctaaaatcctttttttgttgttcctattccaccccttttacccc-aacccctggcaaccactca-tttttttagtctccatagttttacttttttcagaatgtcatatacttggagtcatacagtatttagccttttcaaa-tggcttctttcatttagtcatatgcatttaaatctcatctatgtcttttcatgacttgataactcatttcttttcagtactaaatagtatttcattgtctggatgtaccacagtttatccattctcctactgaagggcatcttgattgttttcaagtttgggcaattatgtataaagctactttaaaca-tccatatgcaggtttttgagtggacatatgttttcaactttttaaggtatataccaagttgtatgcttgccagattgtatggtaagaatatgtttagttttgtaagaaaacatcaaactgtcttccaaagtggctgtac s panTro4.chr17 66289970 2192 - 82630442 TGCTACATAACAAAAGGGatataacaaaagggacatttcaaatgtaattaaggttactaatcagtggacttcaagatagtgacaatagcctgaattatccaggtgtgtccaatgtaattatatgtgctgttaaaagcagaaca-tttttttcccagctgagagcagaagaggacattggagagggaagttggggtagggtaggaaatc--agagattc-aa---agtataacatgaacttgacctaccactgctggtttgaagatggagg--------------------------ggactatatgaaaacatgagaaagaaatgaatcctgccaacaaaacaattcctggaagaagactgagcctcagatgagaaccagctgatactttggttttattcctataagactaagagcaaagaatctcaccatgccctgctgtactcctgacccac-aaaatctgtgagataatacatttgtgttgttttaggttgccaattttatggtaatttgttagaggagcatttggaaactaatacaATCCCCTGAACAtctgagtatagatatcaaccaacattttaataggcttccccttaatttcattccaaggataccataataaactaactactgacagatccctgtgggtcaaagcattctggctaccactatatctctgtttctctttacagtGAATGTAcagttctctctcagtgtactgggtgggggggattggttccaggcctcctgcatatacaaaatctgcacatattccagtctcacactcagccctgtggagtgtttatgaaaagttggccctccatatatgcaagttttgcatcttgagaatactgtatttcaatcagtgtttggttgaaaaaaaatctgcgtgtaagtggacccatgcaattcaaacAGGCCAACTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAGCTTCCAGTGCTCTGAGATCCTATTATCTCTACTGAAATCAA--AGAGAGGGAGTATCTCCACCATCATATCTAGGCTACTGCAAGAGTcccccatgaatataaaagccttgagtaaaggcagttttctctgggacttttgggaagttacttggtgatgtgtatgtgtgcagtgtaacatgataaatcttctccaaaattcctatctccttaagtctttgattcctttcctttatgttatgtcaaaaaagtcctgacatctgagcatcagtaaacataggccatggttgatttcaagtttaaaccaacaaatcaaataattctttgtacaaaaaatttacatccagaatctttaagtgtaatcacatcatttaggcattccttataagcaacttccccaagtgagattattagag--------tgttatattccatcttctttggtttactacccccaaaaatacacttacacatattcttcaggtttctgctaatatataataatacaataatgctttttaaaaatacacttta-tttccagagtagttttgagttcacagcaaaatcga-------gcacacaggtttcctatataccccctgttttcacacatgtgtagcttcccccattatcaacatcccccactagagtgataca-ttttttacaattgataaatctacattgacacataatcacccagagtccatagttttcatttgggttcacttttgttgttgttcattttatgggtttgcataaatacataatttgtacccaccttatagtatcatacagaatagtttcactgcgctaaaatcctttttt-gttgttcctagtccaccccttttacccctaacccctggcaaccactca-tttttttagtctccatagttttacttttttcagaatgtcatatacttggagtcatacagtatttagccttttcaaa-tggcttctttcatttagtcatatgcatttaaatctcatctatgtcttttcatgacttgataactcatttcttttcagcactaaatagtatttcattgtctggatgtaccacagtttatccattctcccactgaagggcatcttgattgttttcaagtttgggcaattatgaataaagctactttaaaca-tccatatgcaggtttttgagtggacatatgttttcaactttttaaggtatataccaagttgtatgcttgctggattgtatggtaagaatatgtttagttttgtaagaaaacatcaaactgtcttccaaagtggctgtac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8313411 2177 - 17838096 tgctatgtaacaaaaggga--------------catttcaaatgtaattaaggttactaatcagttgacttcaagatagtgacaatatcctgaattatccaggtgtgtccaatttaattatatgtgcccttaaaagcagaacattttttttcccagctgagagcagaagaggacattggagagggaagtgggggtagggtaggaaatcagagagattc-aa---agtataacatgaacttgacctaccactgctggtttgaagatggagg--------------------------ggactatatgaaaacatgagaaggaaatgaatcctgccaataaaacaattcctggaagaagactgagcctcagatgagaaccagctgatactttggttttactcccataagaccaagagcaaagaatctcgccatgccctgctgtactcctgacccac-aaaatctgtgagataatacatttgtgttattttatattgccaattttgtggtaatttgttagaggagcaattggaaactaatacaATCCCCTGAACAtctgagtatagatatcagccaacattttaataggcttccccttaatttcattccaaggataccataataaactaactactgacagaaccctgtgggtcaaagcattctggctaccactatatctctgtttctttttacagtgaATGTAcagttgtctctcagtgtactgggtggggggaattggttccaggcctcctgcatatacaaaatctgcacatattcaagtctcacagtcagccctgtggagtgtttatgaaaagttggtcctccatatatgcaaattttgcgtcttgagaatactgtatttcaatcagtgtttggttgaaaaaaa-tctgcgtgtaagtggacccatgcaattcaaacAGGCCAACTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGGCTTAGCTTCCAGTGCTCTGAGATCCTATTTTCTCTACTGAAATCAA--AGAGAGGGAGTATCTCCACCATCATATCTAGGCTACTGCAAGAGTctctcatgaatataaaagccttgagtgaaggcagttttctctgggacctttggaaagttacttggcgatgcgtatgtgtgcagtgtcacatgataaatcgtctccaaaattcctatctccttaagtctttgattcctttcctttacattatgtcaaaaaagtcctgacacgtgagcgtcagtaaacataggccattgttgatttcaagtttaaaccaacaaatcaaataaTTCTTTGTACAGAAATTTTACATCCAGAATCTTTAAGTGTAATCACATCATTTAGGCATTCCTCATAAGCAACTTCCCTAAGTGAGATTATTAGAG--------TGTCATATTCCATCTTCTTTGGTTTACTACCCC-AAAAATACACTTACACATATTCCTCAGGTTTCTGCTAATATATAATAATACAATAATGCtttttaaaaatacacttta-tttccagagtagttttgagttcacagcaaaatcga-------gcacacaggtttcctatataccccctgttttcacacatatgtagcttcccccattatcaacatctcccgctagagtgatacatttttttacaattgataaatctacattgacacataatcatccagagtccatagttttcatttgggttcactt---ttgttgttcattttacgggtttggataaatacatgatttgtacccaccttatagtatcatacagaatagtttcactgccctaaaatcctttttt-gttgttcctattccaccccttctacccctaacccctggcaaccactca-tttttttagtctccatagttttacttttttcagaatgtcatatacttggagtcatacagtatttagccttttcaaa-tggcttctttcatttagtcatatgcatttaaatctcatctatgtattttcatggcttgataactcatttcttttcggcactaaatagtatttcattgtctggatgtaccacagtttatccattctcctactgaagggcatcttggttgttttcaagtttgggcaattatgaataaagctactttaaaca-tccatatgcaggtttttgagtggacatatgttttcaactttttaaagtatataccaagttgtatgattgctggattgtatggtaagaatatgtttagtttggtaagaaactgtcaaactgtcttccaaagtggctgtac i ponAbe2.chr17_random C 0 M 1495 s nomLeu3.chr19 48050207 2178 - 81552678 tgctgcataacaaaaggga--------------catttcaaatgtaattaaggttattaatcagttgacttcaagatggtgagaatatcctaaattatccaggtgcgtccagtgtaattatatgtgcccttaaaagcagaaca--ttttttcccagctgagagcagaagaggacattggagagggaagtgggggtagggtaggaaatcagaaagattcaaa---agtataacatgaacttgacctaccactgctggtttgaagatggaga--------------------------ggactatatgaaaacatgagaaggaaatgaatcctgccaataaaacaattcctggaagaagactgagcctcagatgagaaccagctgatactttggttttactcccataagacctagagcaaagaatctcgccatgccctgctgtactcctgacccac-agaatctgtgaaataatacatttgtgttgttttaggttgccaattttgtggtaatttgttagaggagcgattggaaactaatacaATCCCCCTAACATCTGAGTATAGTTATCAACCAACATTTTAATAGGCTT-CCCTTAATTTCATTCCAAGGATACCATAATAAACTAACTACTGACAGATCCCGGTGGGTCAAAGCATTCTGGCTACCACTATATCTCTGTTTCTCTTTACAGTGAATGTAcagttgtctctcagtgtactgggtcggggggattggttccaggcctcctgcatatacaaaatctgcacatattcaagtctcatactcagccctgtggagtgtttatgaaaagttggccctccatatatgcaagttttgcatcttgagaatactgtatttcaatcagtgtttggttgaaaaaaa-tctgcgtgtaagtggacccacgcaattcaaacAGGCCAACTGCACTTCCTTTTACTTTGGTAGTCAAGTTTTGTGACTTAGCTTCCAGTGCTCTGAGATCCTATTATCTCTACTGAAATCAA--AGAGAGGGAGTATCTCCACCATCATATCTAGGCTATTGCAAGAGTcccccatgaatataaaagccttgagtgaaggcagttttctctggaacctttgggaagttacttggtgatgtgtatgtgtgcattgtcatatgataaatcttctccaaaattcctgtctccttaagtctttgattcctttcctttacattatgtcaaaaatgtcctgacatctgagcatcagtaaacataggccattgttgatttcaagtttaaaccaacaaatcaaataaTTCTTTGTACAAAAATTTTACATCCAGAATCTTTAAGTGTAATCACATCATTTAGGCATTCCTTATAAGCAACTTCCCCAAGTGAGATTATTGGAG--------TGTCATATTCCATCTTCTTTGGTTTACTACCCT-AAAAATACACTTACACATATTCCTCAGGTTTCTGCTAATATATAATAATACAATAATGCtttttaaaaatacacttta-tttccagagtagttttgagttcacagcaaaatcga-------gcacacaggtttcctatataccccctgttttcacacatgtgtagcttcccccattatcaacatcccccactagagtgataca-ttttttacaattgataaatctacattgacacataatcacccagagtccatagttttcatttgggttcacttttgttgtagttcattttatgggtttggataaatacataatttgtacccaccttatagtatcatacagaataatttcactgccctaaaatcctttttt-gttgttcctactccaccccttttacccttaaccccgggcaaccactca-tttttttagtctccatagttttacttttttcagaatgtcatatacttggagtcatacagtatatagccttttcaaattggcttctttcatttagtcataagcatttaaatttcatctatgtcttttcatggcttgataactcatttcttttcagcactaaatagtatttcattgtctggatgtaccacagtttatccattctcctactgaagggcatcttggttgttttcaagtttgggcaattatgaataaagctactttaaaca-tccatatgcaggtttttgagtggacatatgttttcaacttttaaaggtatataccaagttgtatgcttgctggattgtatggtaagaatatgtttagttttgtaagaaaccgtcaaactgtcttgcaaagtggctgtac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53151240 2210 + 80904711 tgctacataacaaaaggga--------------catttcaaatgtaattaaggttactaatcagttgacttcaagatagtgagagtatcctgaattatccaggtgcgtccagtgtaactatatgtgcccttaaaagcagaaca--ttttcttccagctgagagcagaagaggacattggagagggaagtgagggtagggtaggaaatcagagagattc-aa---agtataacatgaacttgacctaccattgctgttttgaagatggaggggactatattaaaatgtgagaaggaaggactatattaaaatgtgagaaggaaatgaatcctgccaacaaaacaattcctggaagaaaactgagcctcagatgagaatcagctgatactttggttttattcctgtaagaccaagagcaaagaatctcaccatgccctgctgtactcctgacccacaaaaatctgtgagataatacatttgtgttgtttttggttgccaattttgtggtaatttgttagaggagcaattggaaact-----aatcccccaaagatctgagtatAGATATCAACCAACATTTTAATACGCTTCTCCTTAATTTCATTCCAAGGATACCATAATAAACTAACTACTGACAGATCCCTGTGGGTCAAAGCATTCTGGCTCCCACTATATCTCTATTTCTCTTTACAGTGAAGGTAcagttgtctctcagtgtactgggtggggaggatttgttccaggtctcctgcatatacaaaatctgctcatactcaagtctcacattcagccctgtggagtgtttatgaaaagtcagccttccatatatgcaagttttgcatcttgagaatactgtatctcaatcagtgtttggttgaaaaaat-tctgtgtgtaagtggacccatgcaattcaaacAGGCCAGCTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAACTTCCACTGCTCTGAGATCCTATTATCTCTACTGAAATCAA--AGAGAGAGAGTGTCTCCACCATCATACCTAGGCTACTGCAAGAGTCCCCTATGAATATAaaagccttgggtgaaggcagttttctctgggacctgtgggaagttacttggcaatgcgtatgtgtgcagtgtcatatgataaatcttctccaaaattcctatctccttaagtctttgattcctttcctttacattatgtcaaaaaagtcctgacacctgagcatcagtaaacatagaccattattgatttcaagtttaagccaacaaaccgaataattctttgtacaacaattttacatccagaatctttaagtgtaatcacatcatttaggcattccttacaagcaacttccccaagtgagattattagagtgagaccgtgttatattccatcttctttggtttactaccct-aaaaatacacttacacatattcctcaggtttctgctaatacataataatgcaataatgctttttaaaaatacactttattttccagagtagttttgggttcacagcaaaatcaagcaggaggcacacaggtttcctatataccccctgttttcacacctgtgtagcttcccctattatcaacatcccctgctagggtgataca-ttttttataattgataaatctacattgacgcataatcacctagagtcca-agttttcatttgggttcactt---ttgttgttcattttatgggtttagataaatacataatttgtacccaccttacagtatcatacagaatagtttcactgccctcaaatcctttttt-gttgttccttttccaccccttttacccataacccctggcaaccactcattttttttagtcttcatagttttacctttttcagaatgtcatatacttggagtcatacggtatacagccttttcaaattggcttctttcatttagtcatatgcatttaaatctcatctatgtcttt---tggcttgataactcatttcttttcagtgctaaataatatttcattgtctggatgtaccacagtttatccattctcctactaaaggacatgttggttgttttcaagtttggacaattatgaataaagctactttaaaca-tccataggcaggtttctgagtggacatatgttttcaactttttaaggtatataccaagttgtatgcttgctggattgtatggtgagaatatgtttagttttgtgagaaaccaccaaactgccttgcaaagtggctgtac i rheMac3.chr16 I 19 C 0 s macFas5.chr16 52716744 2209 + 80997621 tgctacataacaaaaggga--------------catttcaaatgtaattaaggttactaatcagttgacttcaagatagtgagagtatcctgaattatccaggtgcgtccagtgtaactatatgtgcccttaaaagcagaaca--ttttcttccagctgagagcagaagaggacattggagagggaagtgagggtagggtaggaaatcagagagattc-aa---agtataacatgaacttgacctaccattgctgttttgaagatggaggggactatattaaaatgtgagaaggaaGGACTATATTAAAATGTGAGaaggaaatgaatcctgccaacaaaacaattcctggaagaaaactgagcctcagatgagaatcagctgatactttggttttattcctgtaagaccaagagcaaagaatctcaccatgccctgctgtactcctgacccac-aaaatctgtgagataatacatttgtgttgtttttggttgccaattttgtggtaatttgttagaggagcaattggaaact-----aatCCCCCAAAGATCTGAGTATAGATATCAACCAACATTTTAATACGCTTCTCCTTAATTTCATTCCAAGGATACCATAATAAACTAACTACTGACAGATCCCTGTGGGTCAAAGCATTCTGGCTCCCACTATATCTCTATTTCTCTTTACAGTGAAGGTAcagttgtctctcagtgtactgggtggggaggatttgttccaggtctcctgcatatacaaaatctgctcatactcaagtctcacactcagccctgtggagtgtttatgaaaagtcagccttccatatatgcaagttttgcatcttgagaatactgtatctcaatcagtgtttggttgaaaaaat-tctgtgtgtaagtggacccatgcaattcaaacAGGCCAGCTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAACTTCCACTGCTCTGAGATCCTATTATCTCTACTGAAATCAA--AGAGAGAGAGTGTCTCCACCATCATACCTAGGCTACTGCAAGAGTCCCCTATGAATATAAAAGCCTTGGGTGAAGGCAGTTTTCTCTGGGACCTGTGGGAAGTTACTTGGCAATGCGTATGTGTGCAGTGTCATATGATAAATCTTCTCCAAAATTCCTATCTCCTTAAGTCTTTGATTCCTTTCCTTTACATTATGTCAAAAAAGTCCTGACACCTGAGCATCAGTAAACATAGACCATTATTGATTTCAAGTTTAAGCCAACAAACCGAATAATTCTTTGTACAACAATTTTACATCCAGAATCTTTAAGTGTAATCACATCATTTAGGCATTCCTTACAAGCAACTTCCCCAAGTGAGATTATTAGAGTGAGACCGTGttatattccatcttctttggtttactaccct-aaaaatacacttacacatattcctcaggtttctgctaatacataataatgcaataatgctttttaaaaatacactttattttccagagtagttttgggttcacagcaaaatcaagcaggaggcacacaggtttcctatataccccctgttttcacacctgtgtagcttcccctattatcaacatcccctgctagggtgataca-ttttttataattgataaatctacattgacgcataatcacctagagtcca-agttttcatttgggttcactt---ttgttgttcattttatgggtttagataaatacataatttgtacccaccttacagtatcatacagaatagtttcactgccctcaaatcctttttt-gttgttccttttccaccccttttacccataacccctggcaaccactcattttttttagtcttcatagttttacctttttcagaatgtcatatacttggagtcatacggtatacagccttttcaaattggcttctttcatttagtcatatgcatttaaatctcatctatgtcttt---tggcttgataactcatttcttttcagtgctaaataatatttcattgtctggatgtaccacagtttatccattctcctactaaaggacatcttggttgttttcaagtttggacaattatgaataaagctactttaaaca-tccataggcaggtttctgagtggacatatgttttcaactttttaaggtatataccaagttgtatgcttgctggattgtatggtgagaatatgtttagttttgtgagaaaccaccaaactgccttgcaaagtggctgtac i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47719508 2214 + 74645514 TGCTACATAACAAAAGGGA--------------CATTTCAAatgtaattaaggttactaatcagtTGACTTCAAGATAGTGAGAGTATCCTGAATTATCCAGGTGCATCCAGTGTAACTATATGTGCCCTTAAAAGCAGAACA--TTTTCTTCTAGCTGAGAGCAGAAGAGGACATTGGAGAGGGAAGCGGGGGTAGGGTAGGAAATCAGAGAGATTC-AA---AGTATAACATGAACTTGACCTACCATTGCtgttttgaagatggaggggaCTATATTAAAATGTGAGAAGGAAGGACTATATTAAAATGTGAGAAGGAAATGAATCCTGCCAACAAAACAATTCCTGGAAGAAAACTAAGCCTCAGATGAGAATCAGCTGATACTTTGGTTTTATTCCCGTAAGACCAAGAGCAAAGAATCTCACCATGCCCTGCTGTACTCCTGACCCAC-AaaatctgtgagataatacatttgtgttgtttttggttgccaattttgtggtaatttgttagaggAGCAATTGGAAACT-----AATCCCCCGAAGATCTGAGTATAGTTATCAACCAACATTTTAATACGCCTCTCCTTAATTTCATTCCAAGGATACCATAATAAACTAACTACTGACAGATCCCTGTGGGTCAAAGCATTCTGGCTCCCACTATATCTCTATTTCTCTTTACAGTGAAGGTACAGTTGTCTCTCAGTGTACTGGGTGGGGAGGATTTTTTCCAGGTCTCCTGTATATACAAAATCTGCTCATACTCAAGTCTCACACTCAGCCCTGTGGAGTGTTTATGAAAAGTCAGCCTTCCATATATGCAAGTTTTGCATCTTGAGAATACTGTATCTCAATCagtgtttggttgaaaaaat-tctgtgtgtaagtGGACCCATGCAATTCAAACAGGCCAACTACACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAACTTCCACTGCTCTGAGATCCTATTATCTCTACTGaaatcaaagagagagagagtgtctcCACCATCATACCTAGGCTACTGCAAGAGTCCCCTATGAATATAAAAGCCTTGGGTGAAGGCAGTTTTCTCTGGGACCTGTGGGAAGTTACTTGGCGATGCGTATGTGTGCAGTGTCATATGATAAATCTTCTCCAAAATTCCTATCTCCTTAAGTCTTTGATTCCTTTCCTTTACATTATGTCAAAAAAGTCCCGACACCTGAGCATCAGTAAACATAGACCATTATTGATTTCAAGTTTAAGCCAACAAACCGAATAATTCTTTGTACAACAATTTTACATCCAGAATCTTTAAGTGTAATCACATCATTTAGGCATTCCTTACACACAACTTCCCCAAGTGAGATTATTAGAGTGAGACCATGTTATATTCCATCTTCTTTGCTTTACTACCCT-AAAAATACACTTACACATATTCCTCAGGTTTCTGCTAATACATAATAATgcaataatgctttttaaaaatacactttattttcCAGAGTAGTTTTGGGTTCACAGCAAAATCAAGCAGGAGGCACACAGGTTTCCTATATACCCCCTGTTTTCACACCTGTGTAGCTTCCCCTATTATCAACATCCCCTGCTAGGGTGataca-ttttttataattgaTAAATCTACATTGACACATAATCACCTAGAGTCCA-AGTTTTCATTTGGGTTCACTT---TTGTTGTTCATTTTATGGGTTtagataaatacataatttgtaCCCAccttacagtatcatacagaatggtTTCACTGACCTCAAAtcctttttt-gttgttccttttcCACCCCTTTTACCCATaccccctggcaaccactcattttttttAGTCttcatagttttacctttttcagaatgtcatatacttGGAGTCATACAGTATACAGccttttcaaattggcttctttcatttagtcaTATGCATTTAAATCTCatctatgtcttttcatggcttgataactcatttcttttcagtgctaaataatatttcattgtctggatgtaccacagtttatccattctcctactgaagggcatcttggttgTTTTCAAGTTtggacaattatgaataaagctactttAAACA-TCCATAGGCAGGTTTCTgagtggacatatgttttcaactttttaaggTATATACCAAGTTGTATgcttgctggattgtatggtgagaatatgtttagttttgtgagaaaccaccaaactgccttgcaaagtggctgtac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9986342 2186 - 75148670 tgctacataacaaaaggga--------------catttcaagtgtaattaaggttactaatcagttgacttcaagatagtgagagtatcctgaattatccaggtgcatccagtgtaactatatgtgcccttaaaagcagaaca--ttttcttccagctgagagcagaagaggacattggagagggaagtgggggtagggtaggaaatcagagagattc-aaagtagtataacatgaacttgacctaccattgctgttttgaagatggagg--------------------------ggactatattaaaatgtgagaaggaaatgaatcctgccaacaaaacaattcctggaagaaaactgagcctcagatgagaatcagctgatactttggttttattcccgtaagaccaagagcaaagaatctcaccatgccctgctgtactcctgacccac-aaaatctgtgagataatacatttgtgttgtttttggttgccaattttgtggtaatttgttagaggagcaattggaaact-----aatCCCCTGAAGATCTGAGTATAGATATCAACCAACATTTTAATACGCTTCCCCTTAATTTCATTCCAAGGATACCATAATAAACTAACTACTGACAGATCCCTGTGGGTCAAAGCATTCTGGCTCACACTATATCTCTATTTCTCTTTACAGTGAAGGTAcagttgtctctcagtgtactgggtggggaggatttgtttcaggtctcctgcatatacaaaatctgctcatactcaagtctcacactcagccctgtagagtgtttatgaaaagtcagccttccatatatgcaagttttgcatcttgagaatactgtatctcaatcagtgtttggttgaaaaaat-tctgtgtgtaagtggacccatgcaattcaaacAGGCCAACTGCACTTACTTTTACTTTGGTAGTCAAGTTTTGTGACTTAACTTCCACTGCTCTGAGATCCCATTATCTCTACTGAAATCAA--AGAGAGAGAGTGTCTCCACCATCATACCTAGGCTACTGCAAGAGTCCCCTATGAATATAAAAGCCTTGGGTGAAGGCAGTTTTCTCTGGGACCTGTGGGAAGTTACTTGGCGATGCGTATGTGTGCAGTGTCATGTGATAAATCTTCTCCAAAATTCCTATCTCCTTAAGTCTTTGATTCCTTTCCTTTACATTATGTCAAAAAAGTCCTGACACTTGAGCATCAGTAAACATAGACCATTATTGATTTCAAGTTTAAGCCAACAAACCGAATAATTCTTTGTACAACAATTTTACATCCAGAATCTTTAAGTGTAATCACATCATTTAGGCATTCCTTACACGCAACTTCCCCAAGTGAGATTGTTAGAGTGAGACCGTGttatattccatcttctttggtttactaccct-aaacatacacttacacatattcctcaggtttctgctaatacataataatgcagtaatgctttttaaaaatacactttattttccagagtagttttgggttcacagcaaaaccaagcaggaggcacacaggtttcctatataccccctgttttcacacatgtgtagcttcccctgttatcaacatcccctgctagggtgataca-ttttttataattgataaatctacattgacacataatcacccagagtcca-agtttgcatttgggttcacttttgttgttgttcattttatgggtttagataaatacataatttgtacgcaccttacagtatcatacaaaatagtttcactgccctcaaatcccttttt-gttgttccttttccaccccttttacccataacccctggcaaccactcattttttttagtcttcatagttttacctttttcagaatgtcatatacttggagtcatacagtatacagccttttcaaattggcttctttcatttagtcatatgcatttaaatctcatctatgtcttttcatggcttgataactcatttcttttcagcactaaataataattcattgtctggatgtaccacagtttatccattctcctactgaaggacatcttggttgttttcaagtttggacaattatgaataaagctactttaaacattccataggcaggtttctgagtggacatatgttttcagctttttaaggtatataccaagttgtatgcttgctggat-------tgagaatatgtttagttttgtaagaaaccaccaaactgccttgcaaagtggctgtac i chlSab2.chr16 I 19 C 0 e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I e calJac3.chr5 112865017 1779 + 159171411 I a score=1464384.000000 s hg38.chr17_JH159146v1_alt 173035 800 + 278131 cattttccattcccaccagcaatgaatgagaactcctgttgctccatattcttgtcagcatttggtgttgtcagtattctggattttggcctattgcatgttttttcatgtatgagctatttttcctggatcatacattgta-tttgccctatggagcatctgaaatgtgatcagaaatacaggactagtaggaaaaatttatagttatggtggctattcagcacaataggcattccatataagtacatttcccaagtgaggttattagaggattttccagcagtggacagctgttctcatcagactcaggagggaaatctatttttactggtagaggaggctcagaatgacttggagattcaagatcttcagtcccctttgagttcagacagaaatccttatgccaggtttcaattctaaaacttcttctttatcaattccctaactttcacatgacagtcttgttgaagctgtgaattcagcttaactttcaattatgcaactcacacaattaaatttagttagtgtttaatatggggcagtatcagtcctgtggctataacaaacaagttattattttagggctgctgctgaatcttttctgtatctctgattatgacctgacctgagatattaaggtcttgaatttgccatttttctttctgaaagcacacagtacactcagaagacatcctccacaacaatgcttataatcatcatgactgtcttaatagtcaagagcagcagcaacttgagcccccaagccacttatttcaataggtgctttattTAAACAACAA s panTro4.chr17 66292162 799 - 82630442 cattttccattcccaccagcaatgaatgagagctcctgttgctccatattcttgtcagcatttggtgttgtcagtattctggattttggcctattgcatgttttttcatgtatgagctatttttcctggatcatacatcata-tttgccctgtggagcatctgaaatgtgatcagaaatacaggactagtaggaaaaatt-gtagttatggtggctattcagcacaataggcattccatataagtacatttcccaagtgaggttactagaggattttccagcagtggacagctgttctcatcagactcaggggggaaatctatttttactggtaaaggaggctcagaatgacttggagattcaagatcctcagtcccctttgagttcagacagaaatccttatgccaggtttcaattctaaaacttcttccttgtcaattccctaactttcacatgacagtcttgttgaagccgtgaattcagcttaactttcaattatgcaactcacacaattaaatttagttagtgtttaatatggggcagtatcagtcctgtggctataacaaacaagtgattattttagggctgctgctgaatcttttctggatctctgattatgacctgacctgagatattaaggtcttgaatttgccatttttctttctgaaagcacacggtacactcagaagacatcctcaacaacaatgcttataatcatcatgactgtcttaatagtcaagagcagcagcaacttgcgcccccaagccacttatttcaataggtgctttattTAAACAACCA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48052385 801 - 81552678 cattttccattcccaccagcaatgaatgagagttcctattgcttcatattcttgtcagcattttgtgttgtcagtattctggattttggtcTATTGCATGCTTTTTCATGTATGAGCTATTTTTCCTGGATCATACATCGTATTTTGCCCTATGGAGCACCTGAAATTTGATCAGAAATACAGGACTAGTAGGAAAAAGGTATAGTTGTGGTGGCTATTCAGGACAATAGGCATTCCATATAAGTACCTTTCCCAAATGAGGTTATTAGAGGGTTTTCCAGCAGTGGACAGCTGTTctcatcggactcaggagggaaatctatttttactggtaaaggaagctcagaatgacttggagattcaagatcctcagcccactttgagttcagacagaaatccttatgccaggtttcaattctaaaacttcttccttgccagttcgctaactttcacatgacagtcttgctgaagctgtgaattcaacttatctttcaattatgcaactcacacgattaaatttagttagtgtttaatatggggcagtatcagtcctgtggctataacaaacaagtgattattttagggctgctactgaatcttttctggatctctgattatgacctgacctgagatattaaggtcttgaatttgccatttttctttctgaaagcacacagtacactcagaagacattctccacaacaacgcttataatcatcatgactgtcttaagagtcaagagcagcagcaacttgggcccccaagccacttatttcaattggtactttattTAAACAACCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53153450 799 + 80904711 cattttccattcccaccagcaatgaatgagagttcctactgctccataatcttgtcagcatttggtgttgtcagtattctggattttggcctatggcatgttttttcatgtatgagctatttttcctggatgatacatcata-tttgccttatggagcatctgaaatttgatcagaagtataggactagtaggaaaaagatatagttatggtggctattcaggacgataggcattccatataagtacctttcccaaatgagattattagaggattttccagcagtggacagctgttctcatcagactcaggggggaaatctatttttactggtcaaagaagctcagaatgacttggagattcaagatcctcagccccctttgagttcagacggaaacccttacgccaggtttcaattctaaaacttcttccttgtcaatcccctaactttcacatgatagtcttgttgaagctgtgaattcaacttacctttcaattgtgcaactcacacaattaaatttagttagtgtttaatatgggacagtaccagtcctgtggctataagaaacaagtgattattttagggctgctgctgaatcttttctggatctctgattatgacttgacatgagatattaaagtcttgaatttgccatttttctttctgaaagcacgcagtacactcagaagacatcctccacaac-acgcttataatcatcatgactgtcttaagagtcaagagcagcagcaacttgggctcccaagccacttatttcaataggtactttattTAAACAACCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52718953 799 + 80997621 cattttccattcccaccagcactgaatgagagttcctactgctccataatcttgtcagcatttggtgttgtcagtattctggattttggcctatggcatgttttttcatgtatgagctatttttcctggatgatacatcata-tttgtcttatggagcatctgaaatttgatcagaagtacaggactagtaggaaaaagatatagttatggtggctattcaggacgataggcattccatataagtacctttcccaaatgagattattagaggattttccagcagtggacagctgttctcatcagactcaggggggaaatctatttttactggtcaaagaagctcagaatgacttggagattcaagatcctcagccccctttgagttcagacggaaacccttacgccaggtttcaattctaaaacttcttccttgtcaatcccctaactttcacatgatagtcttgttgaagctgtgaattcaacttacctttcaattgtgcaactcacacaattaaatttagttagtgtttaatatgggacagtaccagtcctgtggctataagaaacaagtgattattttagggctgctgctgaatcttttctggatctctgattatgacttgacatgagatattaaagtcttgaatttgccatttttctttctgaaagcacgcagtacactcagaagacatcctccacaac-acgcttataatcatcatgactgtcttaagagtcaagagcagcagcaacttgggctcccaagccacttatttcaataggtactttatttaaacaacca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47721722 800 + 74645514 cattttccattcccaccagcaatgaatgagagttcctacTGCTCCATAatcttgtcagcatttggtgttgtcagtattCTGGATTTTGGCCTATGGCATGTTTTTTCATGTATGAGCTATTTTTCCTGGATGATACATCATA-TTTGCCTTATGGAGCATCTGAAATTTGATCAGAAGTACAGGACTAGTAGGAAAAAGATATAGTTATGGTGGCTATTCAGGACGATAGGAATTCCATATAAGTACCTTTCCCAAGTGAGATTATTAGAGGATTTTCCAGCAGTGGACAGCTGTTCTCATCAGACTCAGGGGGGAAATCTATTTTTACTGGTCAAAGAAGCTCAGAATGACTTGGAGATTCAAGATCCTCAGCCCCCTTTGAGTTCAGATGGAAACCCTTATGCCAGGTTTCAATTCTAAAACTTCTTCCTTGTCAAACCCCTAACTTTCACATGACAGTCTTGTTGAAGCTGTGAATTCAACTTACCTTTCAATTGTGCAACTCACACAATTAAATTTAGTTAGTGTTTAATATGGGACAGTACCAGTCCTGTGGCTATAAGAAACAAGTGATTATTTTAGGGCTGCTGCTGAATCTTTTCTGGATCTCTGATTATGACTTGACATGAGATATTAAAGTCTTGaatttgccatttttctttctgaaagcaCGCAGTACACTCAGAAGACATCCTCCACAACAACGCTTATAATCATCATGACTGTCTTAAGAGTCAAGAGCAGCAGCAACTTGGGCTCCCAAGCCACTTATTTCAATAGGTACTTTATTTAAACAACCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9988528 800 - 75148670 cattttccattcccaccagccatgaatgagagttcctactgctccataatcttgtcagcatttggtgttgtcagtattctggattttggcctatggcatgttttttcatgtatgagctatttttcctggatgatacatcata-tttgccttatggagcatctgaaatttgatcagaagtacaggactagtaggaaaaagatatagttatggtggctattcaggacgataggcattccatataagtacctttcccaagtgagattattagaggattttccagcagtggacagctgttctcatcagactcaggggggaaatctatttttactggtcaaagaagctcagaatgacttggagattcaagatcctcagccccctttgagttcagatggaaacccttatgccaggtttcaattctaaaacttcttccttgtcaatcccctaactttcacatgacagtcttgttgaagctgtgaattcaacttacctttcaattgtgcaactcatacaattaaatttagttagtgtttaatatgggacagtaccagtcctgtggctataagaaacaagggattattttagagctgctgctgaatcttttctggatctctgattatgacttgacatgagatattaaagtcttgaatttgccatttttctttctgaaagcacacagtacactcagaagacatcctccacaacaacgcttataatcatcatgactgtcttaagagtcaagagcagcagcaacttgggctcccaagccacttatttcaataggtactttatttaaacaacca i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17_random 8315588 1495 - 17838096 M e canFam3.chr9 39406773 3033 - 61074082 I e mm10.chr11 99574488 2317 + 122082543 I e calJac3.chr5 112865017 1779 + 159171411 I a score=297392.000000 s hg38.chr17_JH159146v1_alt 173835 146 + 278131 AAGTAATAATGGTGATGTTATTGCATGCAATGCATTTCATTTTTTATTGGCAAGGAGTTTAACACTGGGTTCAAGCTCAGGGACTTTACCAAAGCAATCCCCAA-------------GTCCCATCTATGAAGGTCTACTTTCCAGGGCCACTCCTGGTA s panTro4.chr17 66292961 146 - 82630442 AAGTAATAATGGTGATGTTGTTGCATGCAACGCATTTCATTTTTTATTGGCAAGGAGTTTAACACTGGGTTCAAGCTCAGGGACTTTACCAAAGCAATCCCCAA-------------GTCCCATCTATGAAGGTCTACTTTCCAGGGCCACTCCTGGTA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48053186 146 - 81552678 AAGTAATAATGATGATGTTATTGCATGCGATGCATTTCATTTTTTATTGGCAAGGAGTTTAACACTGGGCTCAAGCTCAGGGACTTTACCAAAGCAATCCCCAA-------------GTCCCATCTATGAAGGTCTACTTTCCAGGACCACTCCTGGTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53154249 146 + 80904711 AAGTAATAATGGTGATGCTATTGCATGCGATGCATTTCATTTTTCATTGGCAAGGAGTTTAACACTGGGTTCAAGCTCAGGGACTTTGCCAAAGCAATCCCCAA-------------CTCCCATCTATGAAGGTCGATTTTCCAGGACCACTCCTGGTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52719752 146 + 80997621 aagtaataatggtgatgctattgcatgcgatgcatttcatttttcattggcaaggagtttaacactgggttcaagctcagggactttgccaaagcaatccccaa-------------ctcccatctatgaaggtcgattttccaggaccactcctggta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47722522 146 + 74645514 AAGTAATAATGGTGATGCTATTGCATGCGatgcatttcatttttcattggcAAGGAGTTTAACACTGGGTTCAAGCTCAGGGACTTTGCCAAAGCAATCCCCAA-------------CTCCCATCTATGAAGGTCGATTTTCCAGGACCACTCCTGGTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9989328 146 - 75148670 aagtaataatggtgatgctattgcatgcgatgcatttcatttttcattggcaaggagtttaacactgggttcaagctcagggactttgccaaagcaatccccaa-------------ctgccatctatgaaggtctattttccaggaccactcctggta i chlSab2.chr16 C 0 C 0 s mm10.chr11 99576805 150 + 122082543 AAGTAAAAATTGTGGTATGATT---------CTATTTCATTTCCTATCAACAAGAAATTTAACACAAAGTACAAGTTTAGGGATTCTGTTAAAGTAGCCACAAAATAGGATTGTTGCTTCTTTTTTTTTTTTTTCCTTTTTCTGGAATCACTCTTGATA i mm10.chr11 I 2317 C 0 e ponAbe2.chr17_random 8315588 1495 - 17838096 M e canFam3.chr9 39406773 3033 - 61074082 I e calJac3.chr5 112865017 1779 + 159171411 I a score=75526.000000 s hg38.chr17_JH159146v1_alt 173981 28 + 278131 ACAACTTTTCtatcagtcagcatctagt s panTro4.chr17 66293107 28 - 82630442 ACAACTTTTCtatcagtcagcatctagt i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48053332 28 - 81552678 ACAACTTTTCtatcagtcagcatctagt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53154395 28 + 80904711 ACAACTTTTCTGTCAGTCAGCACCTAAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52719898 28 + 80997621 acaaCTTTTCtgtcagtcagcacctaat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47722668 28 + 74645514 ACAACTTTTCTGTCAGTCTGCACCTAAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9989474 28 - 75148670 acaaCTTTTCTGTCAATCAGCACCTAAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112866796 28 + 159171411 acaactttTCtatcagtcagcatctagt i calJac3.chr5 I 1779 C 0 s mm10.chr11 99576955 28 + 122082543 CCAACTTTTGTGTTAGCAAATACCTAAT i mm10.chr11 C 0 C 0 e ponAbe2.chr17_random 8315588 1495 - 17838096 M e canFam3.chr9 39406773 3033 - 61074082 I a score=1144205.000000 s hg38.chr17_JH159146v1_alt 174009 365 + 278131 ---gaggagacaaaa--tccatgccaatt---atttg-aacacggaagt--------agc-----------aactacaggaagcagct------------------actga---------ccctagggttgaaggaac-------aaggaagagttaggagttatt-aaaatgtgtaagtttagaggctgggtcctgcagaactgacagtcata-tt---ttttcttgacatattctgatggctctgaacttggaggatagtcccagtggacctgactcagaattctgaggatggggtgctggctggctggagcaaggcctaatatggagagctggaaaagcaacaatgtggcttgcagatt-tcatca-ctaacatcataaagctgagtatcgtagggaggatgtggagttctgagaccacaacttaaccagc s panTro4.chr17 66293135 365 - 82630442 ---gaggagacaaaa--tccatgccaatt---atttg-aacacggaagt--------agc-----------aactataggaagcagct------------------actga---------ccctagggttgaaggaac-------aaggaagagttaggagttatt-aacatgtgtacgtttagaggctgggtcctgcagaactgacagtcata-tt---ttttcttgacatattctgatgtctctgaacttggaggatagtcccagtggacctgactcagaattctgaggatggggtgctggctggctggagcaaggcctaatatggagagctggaaaagcaacaatgtggcttgcagatt-tcatca-ctaacatcataaagctgagtatcgtagggaggatgtggagttctgagaccacaacttaaccagc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8317093 361 - 17838096 ---GAGGAGACAAAAATTCCATGCCAATT---ATTTGAAAcatggaagt--------agc-----------aactacaggaagcagct------------------actga---------ccctagggttgaaggaac-------aaggaagagttaggagttattaaaaatgtataagtttagaggctgggtcctgcagaactgacagtcatattt---ttttcttgacatgttctgatgtctctgaacttggaggatagtcccagtggacctgacttggaactctgaggatggggtgctggctggctggagcaaggcctaatatggaaagctggaaaagcaacaatgtggcttgcagatt-tcattg-ctaacatcataaagctgagtataatag---------ggAGTTCTGAGACCACAACTTAACCAGC i ponAbe2.chr17_random M 1495 C 0 s nomLeu3.chr19 48053360 366 - 81552678 ---gaggagacaaaa--tccatgccaatt---atttg-aacatggaagt--------agc-----------aactacaggaagcagct------------------actga---------ccctagggttgaaggaac------aaaggaagagttaggagttatt-aaaatgtatatgtttagaggctgagtcatgcagaactgacagtcata-tt---ttttcttgacatgttctgatgtctctgaacttggaagatagtcccagtggacctgactcagaattctgaggatggggtgctggctggctggagcaaggcctaatatggagagctgcaaaagcaacaatgtggcttgcagatt-tcatca-ctaacatcataaagctgagtatagtagggaggatgtggcgttctgagaccacaacttaaCCAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53154423 366 + 80904711 ---GAGGAGACAAAA--TCCATGCCAATT---ATTTG-AAcatggaagt--------agc-----------aactacaggaagcagct------------------actga---------cccaaaggttgaaggaac------aaaggaagagttaggagttatt-aaaatgtatacatttagaggctgggccctgcagaactgacagtcata-tt---ttttcttcacatattctgatgtctctgaactaggaggatagtcccagtggatctgactcagaactctgaggatggggtgctggctggctggagcaaggcctaacacggagagctggaaaagcaacaatgtggcttgcggatt-tcatca-ctaacatcacaaagctgagtatagtagggagggtgtggagttctgagaccgcaacttaaccagc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52719926 366 + 80997621 ---gaggagacaaaa--tccatgccaatt---atttg-aacatggaagt--------agc-----------aactacaggaagcagct------------------actga---------cccaagggttgaaggaac------aaaggaagagttaggagttatt-aaaatgtatacatttagaggctgggccctgcagaactgacagtcata-tt---ttttcttcacatattctgatgtctctgaactaggaggatagtcccagtggatctgactcagaactctgaggatggggtgctggctggctggagcaaggcctaacacggagagctggaaaagcaacaatgtggcttgcggatt-tcatca-ctaacatcacaaagctgagtatagtagggagggtgtggagttctgagaccgcaacttaaccagc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47722696 366 + 74645514 ---GAGGAGACAAAA--TCCATGCCAATT---ATTTG-AACATGGAAGT--------AGC-----------AACTACAGGAAGCAGCT------------------ACTGA---------CCCAAGGGTtgaaggaac------aaaggaagagtcaggagttttt-aaaatgtatacatttagaGGCTGGGTCCTGCAGAACTGACAGTCAta-tt---ttttcttcacatattctGATGTCTCTGAACTAGGAGGATAGTCCCAGTGGATCTGACTCAGAACTCTGAGGACGGGGTGCTGGCTGGCTGGAGCAAGGCCTAACATGGAGAGCTGGAAAAGCAACAATGTGGCTTGCGGATT-TCATCA-CTAACATCACAAAGCTGAGTATAGTAGGGAGGGTGTGGAGTTCTGAGACCGCAACTTAACCAGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9989502 366 - 75148670 ---GAGGAGACAAAA--TCCATGCCACTT---ATTTG-AAcatggaagt--------agc-----------aactacaggaagcagct------------------actga---------cccaagggttgaaggaac------aaaggaagagttaagagttata-aaaatgtattagtttagaggctgggtcctgcagaattgacagtcata-tt---ttttcttgacctgttctgatgtctctgaacttggaggatagtcccagtggatctgactcagaactctgaggacagggtgctggctggctggagcaaggcctaacatggagagctggaaaagcaacaatgtggcttgtggatt-tcatca-ctaacatcacaaagctgagtatagtagggagggtgtggagttctgagaccacaacttaaccagc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112866824 366 + 159171411 ---gtgaagacaaaa--accatgccaatt---atttg-aacatggaagt--------agc-----------aactacaggaagcagct------------------actca---------ctctagggataaaggaac------aaaggaagagttagaagtcatt-aaaatgtataagtttagaggatgggtcctgcagaactgaaagtcgta-tt---ttttcttgacatgttctgatgtctctgaacttggaggataatcccagcggatctgactcagacctctgaggatagggtgctggctgactggagcaaggcctaacatggagagctggaaaagcaacaatgtggcttgcagatt-ttatca-ctaacatggaaaagctgagtatagaagggagggtgtggagttctcagaccacaacttaaccagc i calJac3.chr5 C 0 C 0 s mm10.chr11 99576983 405 + 122082543 AAGGAGGGGAAGAAG------TGCCAGTTTACCCTTG-ACCTTGATAATTTAATATAAGCCATTATTGGTTAGCTATAGGAGGTAGCTTAGTAGTTAGAAAAGAAGACAGAAGAATAGTTTCTTATAGAAGAAGCAGCTATGGGAAGGGAAGAGTCAGAGAGCAAT-AAAATATACAAATCAAGGGGA-ATGTCCTGAAGGGATG-CACTCATT-GTGCATCTTCTTGATGTTTTCTAATGTC-CTGAACTTGAAGGATGGCTCCAGTGGACCGG-----GAGCTCC-AGGAT-GGGTGATGGGTGGCTTGAACAAAGTCTGTCATGG----------AAGCAGTGATGTGGTTTGCATAGTACCACCACCCAGCCTCCCCAAACAGAGCATGGAAGGGGAGTGGCCAAGCTATAAGACGAGAGCCTATGTACC i mm10.chr11 C 0 C 0 e canFam3.chr9 39406773 3033 - 61074082 I a score=192166.000000 s hg38.chr17_JH159146v1_alt 174374 51 + 278131 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCTGAAATAGCCGTCTTT s panTro4.chr17 66293500 51 - 82630442 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCTGAAATAGCCATCTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8317454 51 - 17838096 AGCACAGAGTAACTTATTCTGAAGCCCACAGTCTCTGAAATAGCCGTCTTT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48053726 51 - 81552678 AGCACAGAGTAACTTATGCTGAAGCCCACAGTCTCCAAAATAGCCGTCTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53154789 51 + 80904711 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCCGAAATAGCCGTCTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52720292 51 + 80997621 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCCGAAATAGCCGTCTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47723062 51 + 74645514 AGCACAGAGTAACTTATTCTGAAGCCCACAGTCTCCGAAATAGCCGTCTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9989868 51 - 75148670 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCCGAAATAGCCGTCTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112867190 51 + 159171411 agcacaGAGTAACTTATTCTGAAGCCCACAGTCTCTGAAATAGCCATCTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99577388 51 + 122082543 AGCATCTAGGAACTTCTACCAAAACTCGTGATTCCTAAAGTAAAAATGTTT i mm10.chr11 C 0 I 267 s canFam3.chr9 39409806 43 - 61074082 AGAAAAGAGGAACTTATTC-------CACAGCTTCT-AAACAGCCATTCTT i canFam3.chr9 I 3033 C 0 a score=308886.000000 s hg38.chr17_JH159146v1_alt 174425 95 + 278131 AAATCTTACAAACTTTCCCACACGTTTCTTTATATCTATTTTCTTAATTTCATTCTCTCcataaattttggagtcaga---cagagttgcattcagat s panTro4.chr17 66293551 95 - 82630442 AAATCTTACAAACTTCCCCACACGTTTCTTTATATCTATTTTCTTAATTTCATGCTCTCcataaattttggagtcaga---cagagttgcattcagat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8317505 91 - 17838096 AAATCTTATACACTTTCCCACACGTTCCTTTATATCTATTTTCTTAATTTCATTCTCTCcataaattttggagt-------cagagttgcattcagat i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48053777 91 - 81552678 AAATCTTATAAACTTTCCCACACGTTCCTTTATATCTATTTTCTTAATTTCATTCTCTCcataaattttggagt-------cagagttgcattcagat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53154840 94 + 80904711 AAATCTTATAAACTTTCCCACACTTTCCTTTATATCCATTTTCTTAATTTCATTCTCTCcataaattttggagttgg----cagagttgcattcagat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52720343 94 + 80997621 AAATCTTATAAACTTTCCCACACTTTCCTTTATATCCATTTTCTTAATTTCATTCTCTCcataaattttggagtcgg----cagagttgcattcagat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47723113 93 + 74645514 AAATCTTATAAACTTTCCCACACTTTCCTTTATatccattttcttaatttcattctcTCCATAAATTTTGGAGTCGG----CAGAGTTGCATTCAGA- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9989919 94 - 75148670 AAATCTTATAAACTTTCCCACACTTTCTTTTATATCCATTTTCTTAATTTCATTCTCTCcataaattttggagtcag----cagagttgcattcagat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112867241 95 + 159171411 AAATCTTATAAATTTTCCCACACTTTCCTTTATATCTATTCTCTTAATTTCATTCTCTCcataaattttggagtcaga---cagagttgcattcagat i calJac3.chr5 C 0 C 0 s canFam3.chr9 39409849 93 - 61074082 AAATCTCCTGAACCTCCCCATAC-CTCCTTCAAATATAATTCCTTAATTTCATTCTC----Tgagttttggagtcagattttagttttgggttcagat i canFam3.chr9 C 0 C 0 e mm10.chr11 99577439 267 + 122082543 I a score=958801.000000 s hg38.chr17_JH159146v1_alt 174520 272 + 278131 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttttagactta-----cttatctaca----agccaggatcacaatatctatttcacaggatcagtatagatgttatgtgaagcaaagttcgcatgatgtgtacctggcacat-gcacagcatatggtaCT-AACAAGGCCACGCTGGTTCACCTCCTTTCCCTTCAGGTGTGTCTTCTCCATCACTCTTCCTCCTTTTCTTTCAGCCTCTCATACCTAGCC-----------------TTTTT s panTro4.chr17 66293646 272 - 82630442 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttttagactta-----cttatctaca----agccaggatcacaatatctatttcacaggatcagtatagatgttatgtgaagcaaagttcgcatgatgtgtacctggcacat-gcacagcatatggtaCT-AACAAGGCCACGCTGGTTCACCTCCTTTCCCTTCAGGTGTGTCTTCTCCATCActcttcctccttttctttcagcctctcatacctagcc-----------------ttttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8317596 272 - 17838096 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aaacaagctatttaacttcttttagactta-----cttatttaca----agccaggatcacaatatctatttcacaggatcgatatagatgttatgtgaagcaaagttcgcatgatgtgtacttgggacat-gcacagcatatggtaCT-AATAAGGCCACGCTGGTTCACCTCCTTTCCCTTCAGGTGTGTCTTCTCCATCACTCTTCCTCCTTTTCTTTCAGCCTCTTGTACCTAGCC-----------------TTTTT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48053868 272 - 81552678 ttcagttttcgttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttgtagactta-----cttagctaca----agccaggatcacaatatctatttcacaggatcggtatagatgttatgtgaagcaaagttcgcatgatgtgtacttggcacat-gcacagcatgtggtaCT-AACAAGGCCACGCTGGATCACCTCCTTTCCCTTCACGTGTGTCTTCTCCATCACTCTTCCTCCTTTTCTTTCAGCCTCTCGTACCCAGCC-----------------TTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53154934 272 + 80904711 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttttagactta-----cttatctata----agccaggatcgcaatatccatttcacaggattggtgtagatgttatgtgaagcaaagttcacatggtgtgtacttggcatat-gcacagtgtgtggtact-agcaagGCCACGCTGGTTCACCTCCTTCCCCTTCAGATGTGTCTTCTCCATCActcttcctccttttctttcagcctctcgtacctagcc-----------------ttttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52720437 272 + 80997621 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttttagactta-----cttatctata----agccaggatcgcaatatccatttcacaggattggtgtagatgttatgtgaagcaaagttcacatggtgtgtacttggcatat-gcacagtgtgtggtact-agcaagGCCACGCTGGTTCACCTCCTTCCCCTTCAGATGTGTCTTCTCCATCACTCTTCCTCCTTTTCTTTCAGCCTCTCGTACCTAGCC-----------------TTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47723206 272 + 74645514 TTCAGTTTTGTTTC--TAAACTTATGAG-CTATGTGACTGT---------AAGCAAGCTATTTAACTTCTTTTAGACTTA-----CTTATCTATA----AGCCAGGATCGCAATATCTATTTCACAGGATTGGTGTAGATGTTATGTGAAGCAAAGTTCGCATGATGTGTACTTGGCATAT-GCACAGCGTGTGGTACT-AGCAAGGCCACGCTGGTTCACCTCCTTCCCCTTCAGATGTGTCTTCTCCAtcactcttcctccttttctttcagcCTCTCGTACCTAGCc-----------------ttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9990013 273 - 75148670 ttcagttttgtttc--taaacttatgag-ctatgtgactgt---------aagcaagctatttaacttcttttagactta-----cttatctata----agccaggattgcaatatctatttcacaggatcggtatagatgttatgtgaagcaaagttcgcatgatgtgtacttggcatgt-gcacagcatgtggtaCT-AACAAGGCCACGCTGGTTCACCTCCTTCCCCTTCAGATGTGTCTTCTCCATCACTCTTCCTCCTTTTCTTTCAGCCTCTCGTACCTAGCC----------------TTTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112867336 272 + 159171411 ttcagttttccttc--taaacttatgaa-ttatgtgactgt---------aagcaagctattcagcttcttttagactta-----cttatctaca----agccaggatcaccatatctatttcacaggattgacacgaatgttatgtgaaccaaagtctgcatgatgtgtacttggcaggt-gcacagcatatggcaCT-AACAAGGCCATGCTGGTTCACCTCCTTCCCCTTCAGGAGTGTCGTCTCCAtccctcttcctccttttctttcagcctcttatacttagcc-----------------ttttt i calJac3.chr5 C 0 C 0 s mm10.chr11 99577706 258 + 122082543 TTTAGTTTCCTTTTAATGGAGTTTGGAG-TTAGATAGAGGTGGATTCAGAAAGCAAGACATTTTACCTTTTTTAGATCTA-----CTTATTCACATATGAGCCAGGGCACACATGTCTATTTTGTAGGAT-GATACAAGGGTTACACAAAATAAGCCTAGCATGAAGTATCAATGCTAAGT--------------------ACAAGGCCGGGCTGTTTC-CATCTTTTCCTTCCCTGGGTATCTTTCTCAAGACTCTT-----TATTAACTCTGCCTCTCATCC----CC-----------------TTTTC i mm10.chr11 I 267 C 0 s canFam3.chr9 39409942 288 - 61074082 tttagttttttgtt--t--acttaaaagaatatgtgact-t---------aagcaagctatttagtttcatttagatttattttccttatctaca----agccaggataataatatttatctca-aggattgatgtaagtgttaaatga--taaagcgcgca--aagtataattagcgtatggcacagtgtctggcactaaacaaggtcatgttggttttcatCTCTCTCCTTCATGCCCCTCTCCCCCGTCA-TTTTCCCCTTTTCTTTTTTGCCTCTAGTCCCTAGTCGTCTCTCTCTCTCTtttttttt i canFam3.chr9 C 0 I 150 a score=1054725.000000 s hg38.chr17_JH159146v1_alt 174792 297 + 278131 CACTGTG------------------------------TCTTCTCTCTGTCTTTTCTCCT-----ATATTTTGTTCTCTTCTCCCCCTTTTCATTCTTGTCTCCATCCTTCGATACCTTAAT---------TCATCTTGCTTCATCCCTTTCGTTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAAGCTCCCACATTTGCTTTCGACTTGGAAATATGTGTCTTTTTACCATTACTTAACTTTTTAATGCACTTTATGTCTTCTTTGGTGTCATATATAGGAAATTGCCA-TTTTGAGAGCTTGCTGCAGTTTATTGCATAGTGTAAtgg s panTro4.chr17 66293918 297 - 82630442 cactgtg------------------------------tcttctctctgtcttttctcct-----atattttgttctcttctcccccttttcattcttgtctcCATCCTTTAATACCTTAAT---------TCATCTTGCTTCATCCCTTTCGTTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAGGCTCCCACATTTGCTTTCGACTTGGAAATATGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACTTTATGTCTTCTTTGGTGTCATATATAGGAAATTGCCA-TTTTGAGAGCTTACTGCAGTTTATTGCATAGTGTAAtgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8317868 297 - 17838096 CACTGTG------------------------------TCTTCTTTCTGTCTTTTCTCCT-----ATAGTTAGTTCTCTGCTCCCCCTTTTCATTCTTGTCTCCATCCTTTAGTACCTTAAT---------TCATCTTGCTTCATCCTTTTCATTGT-------CCACCTACTCTTA-CATGGCCAATGATCCTCAATGAAAGAAAGGCTCTCACGTTTGCTTTGGACTTGGAAATATGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACCTTATGTCTTCTTTGGTGTCATACATAGGAAATTGCCA-TTTTGAGAGCTTACTGCAGTTTATTGCATAGTGTAAtgg i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48054140 297 - 81552678 TACTGTG------------------------------TCTTCTCGCTGTCTTTTCTCTT-----ATATTTTGTTCTCTTCTCCCCCTTTTCATTCTTGTCTCCATCCTTTAATACCTTAAT---------TCATCTTGCTTCATCCCTTTCATTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAGGCTCCCACATTTGCTTTGGACTTGGAAATATGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACTTTATGTCTTCTTTGGTGTCATATATAGGAAATTGCCA-TTTTGAGAGCTTACTGCAGTTTATTGCATAGTGTAAtgg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53155206 297 + 80904711 cactgtg------------------------------tcttctctctgtcttttctcct-----ctattttgttctcttctcccccttttcattcttgtctcCATCCTTTAATACTCTAAT---------TCATCTTGCTTCATCCCTTTCATTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAGGCTCCCACGTTTGCTTTGGACTTGGAAATGTGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACCTTATATCTTCTTTGGTGTCATATATAGAAAATTGCCA-TTTTGAGAGCTTATTGCAATTTATTGCATAGTGTAAtgg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52720709 297 + 80997621 CACTGTG------------------------------TCTTCTCTCTGTCTTTTCTCCT-----CTATTTTGTTCTCTTCTCCCCCTTTTCATTCTTGTCTCCATCCTTTAATACTCTAAT---------TCATCTTGCTTCATCCCTTTCATTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAGGCTCCCACGTTTGCTTTGGACTTGGAAATGTGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACCTTATATCTTCTTTGGTGTCATATATAGAAAATTGCCA-TTTTGAGAGCTTATTGCAATTTATTGCATAGTGTAAtgg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47723478 297 + 74645514 cactgtg------------------------------tcttctctctgtcttttctcct-----ctattttgttctcttctcccccttttcattcttgtctccatcctttAATACTCTAAT---------TCATCTTGCTTCATCCCTTTCATTGT-------CCACCTACCCTTA-CATGGCCAATGATCCTCAATAAAAGAAAGGCTCCCACGTTTGCTTTGGACTTGGAAATGTATGTCTTTTTACCATTACTTAACTGTTTAGTGCAccttatatcttctttggtgtcATATATAGAAAATTGCCA-TTTTGAGAGCTTATTGCAATTTATCGCATAGTGtaatgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9990286 288 - 75148670 TACTCTG------------------------------TCTTCTCTCTGTCTTTTCTCCT-----CTATTTTGTTCTTTTCTCCCCCTTTTCATTCTTGTCTCCATCCTTTAATACCCTAAT---------TCATCTTGCTTCATCCCTTTCATTGT-------CCATCTACCCTTA-CATGGCCAGTG---------AAAAGACAGGCTCCCACGTTTGCTTTGGACTTGGAAATGTGTGTCTTTTTACCATTACTTAACTGTTTAGTGCACCTTATGTCTTCTTTGGTGTCATATATAGAAAATTGCCA-TTTTGAGAGCTTATTACAATTTACTGCATAGTGTAACgg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112867608 297 + 159171411 tactgtg------------------------------tcttctttctgtcttttcgcct-----ctattttgttcttttcttccccttttcattcttttctccaccctttAATACCTTAAT---------TCATTTTCCTTCATCCCTTTCATTGT-------CTACCTACGCTTA-CATGGCCAATGATGTTCAATAAAAGAAAGGTTCCCACTTTTGCTTTGGACTTGGAAATGTGTGTCTTTTTGCCATTAGTTAACTGTTTAGGGCACCTTATGTCTTCTTTGGTGTCATATATAGGAAATTGCCA-TTTTGAGTGCTTACTGCAGTTTATTGCATAGTGTAAtga i calJac3.chr5 C 0 C 0 s mm10.chr11 99577964 276 + 122082543 C-----------------------------------------------TTTTTGCTCAGATAAACTATTTTGTTCTTTTTTTCATCTTGTGATTCTC-TCCCCATCCTTTA----TTTAAT---------ACCTCGTTTTCCGTCCATTGGTTGGGATGAGAAACATCAACCTTCC-AATGG-CAATATTCCTCCTTTGAAGGAACATTCCCACTTCTGCTTTGGGATTTTAAATGTGTGTTCTTTTGTCATTACTTGACTGTTTATGGC-----------CAGTAGATACTGTATGTAGGAAACTGCCATTTTTGAGAGTTGTTTACAGCCATCTGTACCATGTAACAG i mm10.chr11 C 0 I 1679 s canFam3.chr9 39410380 327 - 61074082 cactgagccacccaggtgtcccCCTCGTCATCTTCAATCTGTCTTCTGTCTTTTCTCCT-----CTGTTTTGTGCTTTT-----CCTTTTCATTCTTTTCTCCATTTCTTA---CCTTAATCTGCCCCCCTGATTTTCTTCTATCCCTCTTATTAT-------CCATCTACTCACATTATCATCAATGAACCTCAATTAAAAGTAC-TCCCCATTCTTGCTTTAGAATTTGCAGTTAATGTGCTTTTCCTATCACTGAACTGTTTA-TGCATCTCAAATGCTCTTAGGTATCATATATAGGAAGTTTCCA-TTTTGAGAGCTTACTGCAGTCTACTGCATAGTGTAGTGG i canFam3.chr9 I 150 I 9150 a score=408572.000000 s hg38.chr17_JH159146v1_alt 175089 148 + 278131 agtgcagtagcatgatcttagctcactgaaacctctgcctcctgggttcaagcgattctccttcctcagcctcccaagtagctgggactacaggtgtgcactaccacgcccagctaattttttttttttttt---tttgtatttttagtag s panTro4.chr17 66294215 145 - 82630442 agtgcagtagcatgatctcagctcactgaaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggtgtgcaccaccacgcccagctaatttttttttgttttt------gtatttttagtag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8318165 151 - 17838096 agtgcagtagcatgatctcagctcactgaaacctccacctcccgggttcaagcaattctcctgcctcagcctcccaagtagctgggactacaggcatgcaccaccacgcccagctaatttttttttttttttttttttgtatttttagtag i ponAbe2.chr17_random C 0 n 0 s nomLeu3.chr19 48054437 141 - 81552678 agtgcagtagcatgatctcagctcactgaaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggtgtgcaccaccacgcccagctaattttttttttt----------gtatttttagtag i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53155503 144 + 80904711 agtgcagtagcatgatctcagctcactgaaacctccgcctctcaggttcaagcgattctcctgcctcagcctcccaagtagttgggactacaggcatacatccccacgcccag-taattttttttttttttt------gtatttttagtag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52721006 143 + 80997621 agtgcagtagcacgatctcagctcactgaaacctccgcctctcaggttcaagcgattctcctgcctcagcctcccaagtagttgggactacaggcatacatcaccacgcccag-taa-tttttttttttttt------gtatttttagtag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47723775 144 + 74645514 agtgcagtagcacgatctcagctcactgaaacctccgtctctcaggttcaagcgattctcctgcctcagcctcccaagtagttgggactacaggcatacatcaccacgcccag-taattttttttttttttt------gtatttttagtag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9990574 143 - 75148670 agtgcagtagcacaatctcagctcactgaaacctccacctctcaggttcaagtgattctcctgcctcagcctcccaagtagttgggactacaggcatacatcaccacgcccag-tat-tttttttttttttt------gtatttttagtag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112867905 142 + 159171411 agtgcagtagcataatctttgctcactgaaacctctgcctcccaggttcaagtgattctcctgtctcagcttcctgagtagctgggactacaggtgtgcactaccacacccaactaatttttttttttt---------gtatttttagtag i calJac3.chr5 C 0 C 0 e canFam3.chr9 39410707 9150 - 61074082 I e mm10.chr11 99578240 1679 + 122082543 I a score=337400.000000 s hg38.chr17_JH159146v1_alt 175237 112 + 278131 agacagggtttcaccatgttgcccaggctggtctcaaactcgtgagctcaggtaatccactcacctcagcctcccaaaatgctaggattacaggtgtgaaccactgctcttg s panTro4.chr17 66294360 112 - 82630442 agacagggtttcaccatgttgcccaggctggtctcaaactcgtgagctcaggtaatccgctcacctcagcctcccaaattgctaggattacaggtgtgaaccactgctcctg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8506825 112 - 17838096 agacagggtttcaccatgttgcccaggctggtctcaaactcgtgagctcaggtaatccgcccacttcagcctcccaaattgctaggattacaagtgtgaaacactgctcctg i ponAbe2.chr17_random n 0 C 0 s nomLeu3.chr19 48054578 111 - 81552678 agacagggttcc-ccatgttgcccaggctggtctcaaactcgtgggctcaggtaatccacccgcctcagcctcccaaattgctaggattacaggtgtgaaccactgctcttg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53155647 112 + 80904711 agacagggtttcaccatgttgcccaggctggtctcaaactcgtgagctcaggttatccgcccgcttcaggctcccagattgctaggattacaggtgtgtaccactgctcctg i rheMac3.chr16 C 0 I 318 s macFas5.chr16 52721149 112 + 80997621 agacagggtttcaccatgttgcccaggctggtctcaaactcgtgagctcaggttatccgcccgcttcaggctcccagattgctaggattacaggtgtgtaccactgctcctg i macFas5.chr16 C 0 I 318 s papAnu2.chr16 47723919 112 + 74645514 agacagggtttcaccatgttgcccagactggtctcaaactcgtgagctcaGGTTATCCGCCCGCTTCAGGCTCCCagattgctaggattacaggtgtgtaccactgctcctg i papAnu2.chr16 C 0 I 318 s chlSab2.chr16 9990717 112 - 75148670 agacagggtttcaccatgttgcccagactggtctcaaactcgtgagctcaggttatctgcccacttcaggctcccagattgctaggattacaggtgtgtaccactgctcctg i chlSab2.chr16 C 0 I 316 s calJac3.chr5 112868047 112 + 159171411 agacaggatttcaccatgttgcccaggctggtcttgaactcatgagctcgagtaatccatctgcctcagcctcccaaattgctaggattacaggtgtgagccactgctcctg i calJac3.chr5 C 0 C 0 e canFam3.chr9 39410707 9150 - 61074082 I e mm10.chr11 99578240 1679 + 122082543 I a score=10800.000000 s hg38.chr17_JH159146v1_alt 175349 3 + 278131 gcc s panTro4.chr17 66294472 3 - 82630442 gcc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8506937 3 - 17838096 gcc i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48054689 3 - 81552678 gcc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53156077 3 + 80904711 gcc i rheMac3.chr16 I 318 C 0 s macFas5.chr16 52721579 3 + 80997621 gcc i macFas5.chr16 I 318 C 0 s papAnu2.chr16 47724349 3 + 74645514 gcc i papAnu2.chr16 I 318 C 0 s chlSab2.chr16 9991145 3 - 75148670 gcc i chlSab2.chr16 I 316 C 0 s calJac3.chr5 112868159 3 + 159171411 gcc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39410707 9150 - 61074082 I e mm10.chr11 99578240 1679 + 122082543 I a score=4095.000000 s hg38.chr17_JH159146v1_alt 175352 1 + 278131 T s panTro4.chr17 66294475 1 - 82630442 T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8506940 1 - 17838096 T i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48054692 1 - 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53156080 1 + 80904711 T i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52721582 1 + 80997621 T i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47724352 1 + 74645514 t i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9991148 1 - 75148670 T i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112868162 1 + 159171411 T i calJac3.chr5 C 0 C 0 s mm10.chr11 99579919 1 + 122082543 T i mm10.chr11 I 1679 C 0 e canFam3.chr9 39410707 9150 - 61074082 I a score=3932118.000000 s hg38.chr17_JH159146v1_alt 175353 991 + 278131 CAAGTAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAGTGAAAACAAAGACAATGGTTTCTTTGCCTAGTATATAATATTTATTAAGAAATGACAGAAGACATTGTATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAACCAAGGGATGG-ATCAGATGTTAAAATGTGGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTGATGAGCTT-CCA-TTCTCTCTGGTG--ACTTGAGGAATGTCACTTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAAATTTTAGGTAAAC--AAGAT----AAA-ATAGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAGTTCTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAATTGATGATCAGCAGGTGGCTTTGTAGCATTTCTGTGTCCCCAGTGAAGGGTCAAGGTATTCATTGTAGAATGGAATCAGATAGAATTGTGA-GCTCATATACTTAGTAGTCTCCATCACAAGC---AATGC--------------------------------------------------------------------------------------------------AAAGTCTGAGAACTTGTTAGTGGTCCAGAGGTGGTCAAGG-GATGAACAGTTCAGAGACACTGTGACCTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAGTGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGTTGGCAGCAGGATGGGGGCGTGCAGCTCACCACACAGCAGGGGGGTAGGTAGGTGCCCTCCACACGACTGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCTGATGCCACCACCAATGCCACAGCCAGTTCCGCAGGAGCTGATCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAG- s panTro4.chr17 66294476 990 - 82630442 CAAGTAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAGTGAAAACAAAGACAATGGTTTCTTTGCCTAGTATATAATATTTATTAAGAAATGACAGAAGACATTGTATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAACCAAGGGATGG-ATCAGATGTTAAAATGTGGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTGATGAGCTT-CCA-TTCTCTCTGGTG--ACTTGAGGAATGTCACTTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAAATTTTAGGTAAAC--AAGAT----AAA-ATAGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAGTTCTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAATTGATGATCAGCAGGTGGCTTTGTAGCATTTCTGTGTCCCCAGTGAAGGGTCAAGGTATTCATTGTAGAATGGAATCAGATAGAATTGTGA-GCTCATATACTTAGTAGTCTCCATCACAGGC---AATGC--------------------------------------------------------------------------------------------------AAAGTCTGAGAACTTGTTAGTGGTCCAGAGGTGGTCAAGG-GATGAACAGTTCAGAGACACTGTGACCTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAGTGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGTTGGCAGCAGGATGGGGGCGTGCAGCTCACCACACAGCAGGGGGGCAGGCAGGTACCCTCCACACGACTGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCTGATGCCACCACCAATGCCACAGCCAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCA-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8506941 992 - 17838096 CAAGTAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAGTGAAAACAAAGACAATGGTTTCTTTGCCTAGTATATAATATTTATTAAGAAATGACAGAAGACATTGTATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAACCAAGGGATGG-ATCAGATGTTAAAACGTGGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTGATGAGCTT-CCA-TTCTCTCTGGTGACACTTGAGGAATGTCACTTGGCTATAATTTGGGGTCTTTGATGTTGCAAAAAATTTTAGGTAAAC--AAGAT----AAA-ATAGATTATAAAGCATGGAAA--CATTAGACTTGTGGACAGTTCTCATGGATAAATTCCACAACATGTCATTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAATTGATGATCAGCAGGTGGCTTTGTAGCATTTCTGTGTCCCCAGTGAAGCGTCAAGGTATCCACTGTAGAATGGAATCAGATAGAATTGTGA-GCTCATATACTTAGTAGTCTCCATCACAGGT---AATGC--------------------------------------------------------------------------------------------------AAAGTCTGAGAGCTTGTTAGTGGTCCAGGGGTGGTCAAAG-GATGAACAGTTCAGAGACACTGTGACCTAGGCAACTGAAAATAAGCAAACTGGCTTTCAGCAAGTGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCTTGGGCATGGTGCAATTGGCAGCAGGATGGGGGCGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGACTGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCTGATGCCACCACCAATGCCACAGCCAGTTCCGCAGGAGCTGGTCTGGCAACAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCA-- i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48054693 993 - 81552678 CGAGTAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAGTGAAAACAAAGACAATGGTTTCTTTGCCTAATATATAATATTTATTAAGAAATGACAGAAGACATTGTATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAACCAAGGGATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTGATGAGCTTCCCA-TTCTCTCTGGTGACACTTGAGGAATGTCACTTGGCTATAATTTGGTGTCTTTCATGTTGCAAAAAATTTTAGGTAAAC--AAGAT----AAA-ATAGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAG-TCTCACGGATAAATTCCACAACATGTCAGTAATTTTTTAATCATGCAGAAATATCAGAAATAGTATATCCCAAGC-AAATTGATGATCAGCAGGTGGCTTTGTAGCATTTCTGTGTCCCCAGTGAAGGGTCAAGGTATTCATTGTAGAATGGAATCAGATAGAATTGTGA-GCTCATATACTTAGTAGTCTCCATCACAGGC---AATGC--------------------------------------------------------------------------------------------------AAAGTCTGAGAACTTGTTAGCGGTCCAGGGGTAGTCAAGG-GATGAACAGTTTAGAGACACTGTGACCTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAGTGGGCTCAT---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGTTGACAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCTGATGCCACCACCAATGCCACAGCCAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGCTGGCAACAGCTGGTCTCACAGCAGCTTGGCTGGCAGCA-- i nomLeu3.chr19 C 0 I 7954 s rheMac3.chr16 53156081 989 + 80904711 CAAGTAGACATTCTTGAATTATAAGCAGTCAAACCAGGTGATGTACAAGTAAAAACAAATACAATGGTTTCTTTGCCTAGTATATACTATTTATTAAGAAATGACAGAAGACATTGCATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAATCAAGGGATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTAATGAGCTT-CCA-TTCTCTCTGGTGACACTTGAGGAATGTCACCTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAACTTTTAGGTAAAC--AAGAT----AAATATGGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAGCTCTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAACTGATGATCAGCAGGTGACTTTGTAGCATTTCTATGTCCGCAGTGAAGAGTCAAGGTATTCACTGTAGAATGGAATC----AGAATTGTGA-ACTCTTATACTTAGTAGTCTCCATCACAGAC---AATGC--------------------------------------------------------------------------------------------------AAAGTCCGAGAACTTGTTAGTGGTCCAGGGGTGGTCAAGG-GATGAACAGTTCAGAGACACTGTGATGTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAATGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACGGATCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCACAGGAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCA-- i rheMac3.chr16 C 0 I 1 s macFas5.chr16 52721583 989 + 80997621 CAAGTAGACATTCTTGAATTATAAGCAGTCAAACCAGGTGATGTACAAGTAAAAACAAATACAATGGTTTCTTTGCCTAGTATATACTATTTATTAAGAAATGACAGAAGACATTGCATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAATCAAGGGATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTAATGAGCTT-CCA-TTCTCTCTGGTGACACTTGAGGAATGTCACCTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAACTTTTAGGTAAAC--AAGAT----AAATATGGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAGCTCTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAACTGATGATCAGCAGGTGACTTTGTAGCATTTCTATGTCCGCAGTGAAGAGTCAAGGTATTCACTGTAGAATGGAATC----AGAATTGTGA-ACTCTTATACTTAGTAGTCTCCATCACAGAC---AATGC--------------------------------------------------------------------------------------------------AAAGTCCGAGAACTTGTTAGTGGTCCAGGGGTGGTCAAGG-GATGAACAGTTCAGAGACACTGTGACGTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAATGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACGGATCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCACAGGAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCA-- i macFas5.chr16 C 0 I 1 s papAnu2.chr16 47724353 993 + 74645514 caagtAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAgtgaaaacaaatacaatggTTTCTTTGCCTAGTATATACTATTTATTAAGAAATGACAGAAGACATTGTATTACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAATCAAGGGATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTAATGAGCTT-CCA-TTCTCTCTGGTGACACTTGAGGAATGTCACCTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAACTTTTAGGTAAAC--AAGAT----AAATATGGATTATAAAGCATAGAAA--CATTAGACTTGTGGATAGCTCTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCGCAAGC-AAACTGATGATCAGCAGGTGACTTTGTAGCATTTCTGTGTCCGCAGTGAAGAGTCCAGGTATTCACTGTAGAATGGAATCAGATAGAATTGTGA-ACTCTTATACTTAGTAGTCTCCATCACAGAC---AATGC--------------------------------------------------------------------------------------------------AAAGTCCGAGAACTTGTTAGTGGTCCAGGGGTGGTCAAGG-GATGAACAGTTCAGAGATACTGTGACGTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAATGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACGGATCCACTGCTGCCCTCTTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCgcaggagctggtctggcagcagcttggctggcagcagctggtctcacagcagcttggctggcagca-- i papAnu2.chr16 C 0 I 17588 s chlSab2.chr16 9991149 989 - 75148670 CAAGTAGACATTCTTGAATTATAAGCAGTTAAACCAGGTGATGTACAAGTGAAAACAAATACAATGGTTTCTTTGCCTAGTATATACTATTTATTAAGAAATGACAGAAGACATTGTATCACAGATATAACTGAAATA-TCCAGCAGGCAAGATCATTATGATCC-----------AAAAACCAAGGGATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGTAATGAGCTT-CCA-TTCTCTCTGGTGACACTTGAGGAATGTCACCTGGCTATAATTTGGTGTCTTTGATGTTGCAAAAAATGTTAGGTAAAC--AAGAT----AAATATAGATTATAAAGCATGGAGA--CATTAGACTTGTGGATAGCTGTCATGGATAAATTCCACAACATGTCAGTAA-TTTTTAATCCTGCAGAAATATCAGAAATAGTATATCCCAAGC-AAAT---TGATCAGCAGGTGACTTTGTAGCATTTCTGTGTCCGCAGTGAAGGGTCAAGGTATTCACTGTAGAATGGAATCAGATAGAATTGTGA-ACTCTTATAC-TAGTAGTCTCCATCACAGGC---AATGC--------------------------------------------------------------------------------------------------AAAGTCCGAGAACTTGTTAGTGGTCCAGGGGTGGTCACGG-GATGAACAGTTCAGAGATACTGTGACGTAGGCAATTGAAAATAAGCAAACTGGCTTTCAGCAAATGGGCTCAC---------------------------------------AGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACGCAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACGGATCCACTGCTGCCCTCTTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGCTGACAGCAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCA-- i chlSab2.chr16 C 0 I 1 s calJac3.chr5 112868163 1115 + 159171411 CAAGTAGACATTCTTAAATTATAAGCAGTTAAACCAGATGAGGTACAAGTGAAAACAAAGACCATGGTTTCTTTGCCTAGTACATAATGTTTATTAAGAAATGACAGAAGATATTGTATCACAGATATAACTGAAATAGTCCAGCAGGCAAGATCATTATGATCC-----------AAAAACAGAGGAATGG-ATCAGATGTTAAAATGTAGAA-AGTCCAGCCTACTTCTTAGAAGCTGAATGTTGGGCGATGAGCTT-CCA-TTTTCTCCGGTGACACCTGAGGAATGTCACTTGGGTATAATTTGGTGTCTTTGACATTGCAAAA--TTTTAGGTAAAC--AAGAT----AAAAATAGATTATAAAGCATGGAAA--CATTAGACTTGTGGATAACTCTCATGGATGAATTCCACAACGTGTCAGTAA-TTTTTAATACTGCAGAAATATGAGAAACAATATATCCCAAGCAAAATTGATGATCTGCCGGTGGCTTTGTAGCCTTTCTGTGTCACCAGTGAAGGGTCAAGATATTCATTGTAGAATGGAATCAGGTAGAATTGAGA-GCTCATATACTTAGTAGTCTCCATCGCAGGA---AAAGCAATAAAAGTCTGAGAACTTGCTAGTGGTCTAGGAGTGGTCAAGAGATGAACAGTTCAGAGATATTGTGAGAGTAGTCTCCATCACAGGAAAAGCAATAAAAGTCTGAGAACTTGCTAGTGGTCCAGGAGTGGTCAAGA-GATGAACAGTTCAGAGCTATTGTGACCTATGCAACTGAAAATAAGCAAACCAGCTTTCAACAAGTGGGCTCAC---------------AGCAGGTGGGCCCACAGCAGGAGTAGCAGCAGACTGGGCGGCAGCCGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACGCAGCAGGGGGGCAGGCAGGTGCCTTCTGCACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACAGCCACCCTCCTGGCCACAGCCGATGCTACCACCAATGCCACAGCTGGTTCCACAGCAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTGACAGCAGCTTGGCTGGCAGCA-- i calJac3.chr5 C 0 I 1 s mm10.chr11 99579920 947 + 122082543 TAAGTACATTTTCTAATACCATAAG---------CAGATGAAACACAAGTAGAAACAA--ACCATAGTTAATTTGCCCAGGATATAAGCTTTATTAAGAAACATCAGAAGTCACAATGCTACAGATATAA-TGGAATG-GCCAGCAGGCAAACGAATTATGATCC---------AAAAAAAATAAGGAAAGG-ATCCAGTGGAAAAGTGTAGAATGGTCTGGCCTATTTCTTAGCAGCCAGAAGTTGGTTAAGGAACTT-CCATTTTTCTCTGATGACATCTGAAGAATGTCTCTCAGCTGTGGGCTGGTGTCTTTGATGTTA-GAAAAGCTTTAAGTAAACAGAAGAT----AAAAGTTGGTCACCAAGCA--GGAA--GAATAGGATTACAGATTGTTCTAAAGAAAATATTCTTCAAGATTTTGACAA-TTTTCAATTCTGCAAGAGTTTCAGATGCAATACATCCAGAAC-AATTTGGTGGTCAGCCTGTGGGTTCTCAGCATTTCTGGATCCACTGTAGAGGGTCAAGGTATTGGTTATAGAACAGACTCGGACAGGGCTGTGATGCGCCTGTACTCTG-AGGCCTCATAAAAGAC---AACGA----------------------------------------------------------------------------------------------AGCAAAGGTTGGAGAACTTGTTACTGCTCCAGAGTTGGTTAAGGAGATGCACAATTCAAGAATACCATGATCTGGGCAATCAAA-------AAATTAGCTCTTAATAGGTGGATTAGC------------------------------AGCAGTAGCAGCAACAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGACGGCAGCAGGAGGCCTGGGCGTGGTGCAGCTGGCAGCAGGTTGGGGGTATACAGCTCACCACACAGCAGGGGGGCAGGCAGGTGCCCTCCACGCGGCAGTCAGGGCGGCACCATCTAACACGGCAGCTCACACCTCCAAAGCCACCCTCCTGGCCACAGCCAATTCCACCCCCAATGCCATAGCCTGTCCCACAG---------------CAGCTTGGCTGGAAGCAG------------------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 39419857 1012 - 61074082 CAAGTAGGCACTCACAAATTATCA-CAGTTAACCCATTCTATGTACAAGTAGAAACACAGACTAAGGTTTATTTGCCCAGT-TATAATATTTATTAAGAAATGACAGAAAACACTGTATCACAGGTGTAATTGAAACA-GCCAACAGGCAAGATCATTATGATCCCCACCCCCTGCAAAAA--AAGGGTTGGAATCAGATGTTGAATTATGAAAAAGTTTAGCCTACTTCTTAGAAGGTGAATTTTGGGTGAAGAGCTT-CCA-TTTTTTCTGATGACACCTGAGGAAAGTCACTTGACTCTACTCTGGTGCCTTTGATGTTAGAAAAAATGTTAGGTAAAT--AGAACTAAAAAAAAAAGATTATAAAGCAGAGAAAAGAATTAGACTTGTGGATAGTTCTCAAAGATTAATTCCACAGAATATTAATAG-TTTTCAACCCTACAGAAAAATCAGAAATAGTATATCCAAAGC-ATTTTGATAACCAACTGGTAGGTTTGCAGCTTTTCTGTGACCACAGTGGATAGCCAAGGTATTCAGTGCAGGATGAAATCAGATAAA--------ACTCATATACTTAGAACTCCATAACTTAAACCTAAATG---------------------------------------------------------------------------------------------------GAAGTCTAAGAACTT-CTGATGGCCCAAGGGTGATTGAGGAGATCTGCTATCCAGAGATATTGTGTCCTGGGCAATTGGAAATGA-CAACCTGGCTTTTAGCAGGTGGGCTCACAACAGGTGGGCTGGCAGCAGGTGGGCTGGCAGCAGTAGGAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGCAGGTGTCCTCCACGCGGCAGTCAGGGCGGCACCACCTGACTCGGCAGCTCATAGCTCCACTGCCACCCTCCTGGCC------------ACCACCAATGCCACAGCCAGTCCCA------------------CAGCTGggctggcagcagctggtctgacagcaagttggctggcagca-g i canFam3.chr9 I 9150 C 0 a score=5210.000000 s hg38.chr17_JH159146v1_alt 176344 4 + 278131 CTGG s nomLeu3.chr19 48063640 4 - 81552678 CTGG i nomLeu3.chr19 I 7954 C 0 s papAnu2.chr16 47742934 4 + 74645514 ctAG i papAnu2.chr16 I 17588 C 0 s chlSab2.chr16 9992139 4 - 75148670 CTGG i chlSab2.chr16 I 1 I 14742 s mm10.chr11 99580867 4 + 122082543 CTGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39420869 4 - 61074082 ctgg i canFam3.chr9 C 0 C 0 e ponAbe2.chr17_random 8507933 0 - 17838096 C e calJac3.chr5 112869278 1 + 159171411 I e macFas5.chr16 52722572 1 + 80997621 I e rheMac3.chr16 53157070 1 + 80904711 I e panTro4.chr17 66295466 0 - 82630442 C a score=21072.000000 s hg38.chr17_JH159146v1_alt 176348 26 + 278131 TCTCACAGCAGCTTGGCTGGCAGCAA s panTro4.chr17 66295466 1 - 82630442 -------------------------A i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8507933 1 - 17838096 -------------------------G i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48063644 26 - 81552678 TCTCACAGCAGCTTGGCTGGCAGCAG i nomLeu3.chr19 C 0 T 7983 s papAnu2.chr16 47742938 26 + 74645514 TTTCACAGCAGCTTGGCTGGCAGCAG i papAnu2.chr16 C 0 T 17617 s chlSab2.chr16 10006885 26 - 75148670 TCTGGCAGCAGCTTGGCTGGCAGCAG i chlSab2.chr16 I 14742 C 0 s mm10.chr11 99580871 26 + 122082543 TCTCACAACAGCTGGGCTGGCAGCAG i mm10.chr11 C 0 C 0 s canFam3.chr9 39420873 26 - 61074082 tctggcagctggttggctggcagcag i canFam3.chr9 C 0 C 0 e calJac3.chr5 112869278 1 + 159171411 I e macFas5.chr16 52722572 1 + 80997621 I e rheMac3.chr16 53157070 1 + 80904711 I a score=19255.000000 s hg38.chr17_JH159146v1_alt 176374 4 + 278131 CTGG s panTro4.chr17 66295467 4 - 82630442 CTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8507934 4 - 17838096 CTGG i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48055687 4 - 81552678 CTGG i nomLeu3.chr19 T 7983 C 0 s rheMac3.chr16 53157071 4 + 80904711 CTGG i rheMac3.chr16 I 1 C 0 s macFas5.chr16 52722573 4 + 80997621 CTGG i macFas5.chr16 I 1 C 0 s papAnu2.chr16 47725347 4 + 74645514 ctgg i papAnu2.chr16 T 17617 C 0 s chlSab2.chr16 10006911 4 - 75148670 CTGG i chlSab2.chr16 C 0 T 14772 s calJac3.chr5 112869279 4 + 159171411 CTGG i calJac3.chr5 I 1 C 0 s mm10.chr11 99580897 4 + 122082543 CTGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39420899 4 - 61074082 ctcg i canFam3.chr9 C 0 C 0 a score=4762498.000000 s hg38.chr17_JH159146v1_alt 176378 1330 + 278131 AGCTGCAGGTCCCACTGGTTGAGAAGCTGGGAAATCCGCAGAAGCTAGTCTGGCAGCTGC------------------------------GTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGATGGAGAAGCTGGGATATCCACAGAAGCTGGTCTGGCAGCAGGTCATGGTGTCAGAAGTTGGGTTAAGAGTTAGGTTGCTTGGAGGAGTTTCTGAGGTTTGGTGGTGACTTCCACGTTGGTCCTTTTATATATCTGAACCAGCTGCTGTTTACAAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTACTCCGTGGATCTCTGATTGGCTTATGTTGAAATACTTGTGACACATTATGAGCAATAGTTTAGAAATTA--CTGTTTTATAGTTTCTTCTGGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCAAAGAGTACTTCCATTTTAGTCCAAATGAATGCTCTCATTTTACATA-ATAGTTATTCCACGTGACAATCTATCCATACCTCTAAGGCTAAGAGTAATA--ATTGTGCTGTTATATTTAACTATTA-TTTTTTCCTCCTAGATATATAGACTAAATTTTATTGAATTTTGGATATCTGGATATCTACTGAACTGAAGGAATACCTTTGGTCATACATAATTCGCAGATTTCACCT-------TTTTTTGTTCCAATGTCTTATTGAATTACCGATTATAGTTCCTTTGATTTCAACCAATTTGGAATGTGTGACTATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTTAATAAATGTTTACTGAATCTGATTCAATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCTTGATTCATGGATATCAATACCACTCAAACATGATTAAAGAGAACTTTCAAGCTGTAGTACTTCTCATGAAAGAGTC-TTGTTATTTGCTGTAAAGAGACTAGGAAATGTGTTttttggtttattttattttatttt---------------ttggatttAGTAGTGGAACCGGG-CTCGGGAAAAAATATCTAGGAGTTATGACACTTTGAAAAATGTACTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATTTTGTGTGTAATCCATCATTGCTACCAATTAAAT-ATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAACGTGTTTCT-------TTCTATATTTGCATCCTATTGTATTTTGTGTATTACACTCTAATGCCTAATGAAGAATTTAAAAATTAAATGGTAAAATA s panTro4.chr17 66295471 1375 - 82630442 AGCTGCAGGTCCCACTGGTTGAGAAGCCGGGAAATCCGCAGAAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGAGAAGCTGGGATATCCACAGAAGCTGGTCTGGCAGCAGGTCATGGTGTCGGAAGTTGGGTTAAGAGTTAGGTTGCTTGGAGGAGTTTCTGAGGTTTGGTGGTGACTTCCACGTTGGTCCTTTTATATATCTGAACCAGCTGCTGTTTACAAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTACTCCGTGGATCTCTGATTGGCTTATGTTGAAATACTTGTGACACATTATGAGCAATAGTTTAGAAATTA--CTGTTTTATAGTTTCTTCTGGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCAAAGAGTACTTCCATTTTAGTCCAAATGAATGCTCTCATTTTACATA-ATAGTTATTCCACGTGACAATCTATCCATACCTCTAAGGCTAAGAGTAATA--ATTGTGCTGTTATATTTAACTATTA-TTTTTTCCTCCTAGATATATAGACTAAATTTTATTGAATTTTGGGTATCTGGATATCTACTGAACTGAAGGAATACCTTTGGTCATACATAATTCGCAGATTTCACCT-------TTTTTTGTTCCAATGTCCTATTGAATTACCGATTATAGTTCCTTTGATTTCAACCAATTTGGAATGTGTGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTTAATAAATGTTTACTGAATCTGATTCAATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCTTGATTCATGGATATCAATACCACTCAAACATGATTAAAGAGAACTTTCAAGCTGTAGTACTTCTCATGAAAGAGTC-TTGTTATTTGCTGTAAAGAGACTAGGAAATGTGTTTTTTGGtttattttattttattttattttattttattttTTGGATTTAGTAGTGGAACCGGG-CTCGGGAAAAAATATCTAGGAGTTATGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTTGGAAACTGCATAATTTTGTGTGTAATCCATCATTTCTACCAATTAAAT-ATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAACGTGTTTCT-------TTCTATATTTGCATCCTATTGTATTTTGTGTATTACACTCTAATGCCTAATGAAGAATTTAAAAATTAAATGGTAAAATA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8507938 1343 - 17838096 AGCTGCAGGTCTCACTGGTTGAGAAGCTGGGAAATCCGCAGAAGCTGGTCTGGCAGCTGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGAGAAGCTGGGATATCCACAGAAGCTGGTCTGGCAGCAGGTCATGGCGTTGGGAGTTGGGTTGAGAGTTAGGTTGCTTGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACGTTGGCCCTTTTATATATCTGAACCAGCTGCTGTTTACAAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCTGATTGGCTTACGTTGAAATACTTATGACACATTATGAGCAATAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCTGGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCAAAGAGTCCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTACATA-ATAGTTATTCCATGTGACAATCTATCCAGACCTCTAAGGCTAAGAGTAATA--ATTGTGCTGTTTTATTTAACTATTATTTTTTTCCTTCTAGATATATAGACTACATTCTATTGAATTTTGGATATCTGGATATCTACT-AACTGAAGGAGTACCTTTGGTCAGACATAATTTGCAGATTTCACCT-------TTTTTTGTTCCAATGTCCTATTGAATTACTGATTATAGTTCCTTTGATTTCAACCAATTTGGAATGTGTGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTT-------------------------AATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCATGATTCGTGGATATCAATACCACTCACACATGATTAAAGAGAACTTTCAAGCTGTAGTACTTCTCATGAAAGAGTC-TTGTTATTTGCTGTAAAGAGACTAGAAAATGTGTTTTTTGAtttattttattttatttt----------attttTTGGATTTAGTAGTGGAACCGGG-CTCGGGAAAAAATATCTAGGAGTTATGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATTTTGTGTGTAACCCATCATTGCTACCAATTAAATGATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAATGTGTTTCT-------TTCTATATTTGCATCCTGTTGTATTTTGTGTATTACACTCTAACGCCTAATGAAGAATTTAAAAATTAAATGGCAAAATA i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48055691 1330 - 81552678 AGCTGCAGGTCCCACTGGTTGAGAACCTGGGAAATCCGCAGAAGCTGGTCTGGCAGCAGC------------------------------TTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGAGAAGCTGGGATATCCACAGAAGCTGGTCTGGCAGCAGGTCATGGTGTCGGGAGCTGGGTTGAGAGTTAGGTTGC-TGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTT--TATATCTGAACCAGCTGCTGTTTACAAAATTGTTAACATACTTTCTTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCTGATTGGCTTACGTTGAAATACTTATGACACATTATGAGCAATAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCTGGAGTCTTCATATCAGTCTTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCAAAGAGTTCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTATATA-ATAGTTATTCCACGTGACAATCTATCCAGACCTCGAAGGCTAAGAGTAATA--ATTGTGCTGTTGTATTTAACTATTA-TTTTTTCCTCCTAGATATATAGACTAAATTCTATTGAATTTTGGATATCTGGACATCTACTGAACTGAAGGAGTACCTTTGGTCATACATAATTTGCAGATTTCACCTTTTTTTGTTTTTTGTTCCAATGTCCTATTGAATTACCGGTTATAGTTCCTTTGATTTCAACCAATTTGGAATATATGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGAAACCAAACTGACATAGTAT-----------------------TTAGGAAGgtatccagcagagtccttagtttgtagtagaaccttaataaatgtttattgaatCTGATTCAATAAATGTTTATTG--ATAGGTGGAGTAAAAGGCATGATTCATGGATATCAATACCACTCACACATGATTAAAGAGAACTTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTGCTGTAAAGAGACTAGGAAATGTGTCTTTGG------TTTATTTTATTTT---------------TTGGATTTAGTAGTGGAATCGGG-CTTGGGAAAAAATATCTAGGAGTTATGACACTTTGAAGAATGTGCTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATTTTGTGTGTAATCCATCATTGCTACCAATTAAATGATAGAGGTAAGTTCTGGAAGCTTGTCAATAATGTGGAAAATGTGTTTCT-------TTCTATATTTGCATCCTATTGTATTTTGCGTATTACACTCTAATGCCTAATGAAGAATTTAAAAATTAAATTGTAAAATA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53157075 1338 + 80904711 AGCCACAGGTCCCACTGGTTGAGAAGCTGGGAAATCCACAGAAGCTGGTCTGGCAGCAGCT------------------------------TGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTAGAGCAGCTGGGATATCCACAGAGGCTGGTCTGGCAGCAGGTCATGGTGTTGGGAGTTGGGTTGAGAGCTGCGTTGCTTGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTTTATACATCTGAGCCAGCTGCTGTTTACAAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCCAATTGGCTTACATTGAAGTACTTATGACACATTATGAGCAATAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCCGGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCCAAGAGTCCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTATATA-ATAGTTATTCCATGTGACAATCTATTCAGACCTCTAAGGCTAAGAGTAATA--ACTGTGTTGTTATATTTAACTATTA-TTTTTTCCTCCTT----GATAGACTAAATTCTATTAAGTTTTGGATATCTGGATATCTACTGAACTGAAGGAGTACCTTTGGTCATGCATAATTCGCAGATTTCACCT-------TGTTTTGTTCCAGTGTCGTATTGAATTACCGATTATAGTTCCTTTGATTTCAACCAATTTGAAATGTGTGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTTAATAAATGTTTATTGAATCTGATTCAATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCATGATTCATGGATATCAATACCACTCCCACAAAATTAAAGAGAAATTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTACTGTAAAGAGACTAGGAAATGTGTTTTTTGGtttattttattttatttt-----attttattttTTGG-TTTAGTAGTGGAACCGGG-CTCAGGAAAAAATATCTAGGAGTTGTGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATCTTGTGTGTAATCCATCATTGCTACCAAGTAAATGATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAATATGTTCCT-------TTCTATATTTGCATCCTATTGTATTTTGTATATTACACTCTAATACCTAATGAAGAGTTTAAAAATTAAATGCTAAAATA i rheMac3.chr16 C 0 M 1328 s macFas5.chr16 52722577 1368 + 80997621 AGCCACAGGTCCCACTGGTTGAGAAGCTGGGAAATCCACAGAAGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTAGAGCAGCTGGGATATCCACAGAGGCTGGTCTGGCAGCAGGTCATGGTGTTGGGAGTTGGGTTGAGAGCTGCGTTGCTTGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTTTATACATCTGAGCCAGCTGCTGTTTACAAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCCAATTGGCTTACGTTGAAGTACTTATGACACATTATGAGCAATAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCCGGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCCAAGAGTCCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTATATA-ATAGTTATTCCATGTGACAATCTATTCAGACCTCTAAGGCTAAGAGTAATA--ACTGTGTTGTTATATTTAACTATTA-TTTTTTCCTCCTT----GATAGACTAAATTCTATTAAGTTTTGGATATCTGGATATCTACTGAACTGAAGGAGTACCTTTGGTCATGCATAATTCGCAGATTTCACCT-------TGTTTTGTTCCAGTGTCGTATTGAATTACCGATTATAGTTCCTTTGATTTCAACCAATTTGAAATGTGTGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTTAATAAATGTTTATTGAATCTGATTCAATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCATGATTCATGGATATCAATACCACTCCCACATAATTAAAGAGAAATTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTACTGTAAAGAGACTAGGAAATGTGTTTTTTGGtttattttattttatttt-----attttattttTTGG-TTTAGTAGTGGAACCGGG-CTCAGGAAAAAATATCTAGGAGTTGTGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATCTTGTGTGTAATCCATCATTGCTACCAAGTAAATGATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAATATGTTCCT-------TTCTATATTTGCATCCTATTGTATTTTGTATATTACACTCTAATACCTAATGAAGAGTTTAAAAATTAAATGGTAAAATA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47725351 1371 + 74645514 agcCACAGGTCCCACTGGTTGAGAAGCTGGGAAATCCgcagaagctggtctggcagcagcttggctggcagcagctggtctcacagcagcgtggctggcagcagctggtctcacagcagcttggctggcagcagctggagccgcagGTCCCACTGGTAGAGAAGCTGGGATATCCACAGGGGCTGGTCTGGCAGCAGGTCATGGTGTTGGGAGTTGGGTTGAGAGCTGCGTTGCTTGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTTTATACATCTGAGCCAGCTGCTGTTTACAAAATTgttaacatattttctttg-tttttgtttaaatttgtttctcagtGGATCTCCAATTGGCTTACGTTGAAGTACTTATGACACATTATGAGCAATAGTTTAGAAATTGCTCTGTTTTATAGTTTCTTCCGGACTCCTCATATCAGTCCTTTGCTCTTTGGAGTA-TGTTTGTGGTTTCCCATGTTCCAAGAGTCCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTATGTA-ATAGTTATTCCATGTGACAATCTATTCAGACCTCTAAGGCTAAGAGTAATA--ACTGTGTTGTTatatttaactatta-ttttttcctcctggaTAGATAGACTAAATTCTATTAAGTTTTGGATATCTGGATATCTACTGAACTGAAGGAGTACCTTTGGTCATGCATAATTCGCAGATTTcacct-------tgttttgttccagtgtCGTATTGAATTACCGATTACAGTTCCTTTGATTTCAACCAATTTGAAATGTGTGAATATTATTCCTGTTCCAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAaccttaataaatgtttattgaatctgattcaataaatgtttattga-ataggtGGAGTAAAAGGCATGATTCATGGATATCAATACCACTCCCACATAATTAAAGAGAAATTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTACTGTAAAGAGACTAGGAAAtgtg-tttttggtttattttattttatttt-----attttattttttgg-tttagtAGTGGAACCGGG-CTTAGGAAAAAATATCTAGGAGTTGTGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTTGGAAATTGCATAATCTTGTGTGTAATCCATCATTGCTACCAAGTAAATGATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAATATGTTCCT-------TTCTATATTTGCATCCTATTGTATTTTGTATATTACACTCTAATACCTAATgaagagtttaaaaattaaatggtaaaata i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9992143 1362 - 75148670 AGCCACAAGTCCCACTGGTTGAGAAGCTGGGAAATCCGCAGAAGCTGGTCTGGCAGCAGTGTGGCTGGCAGCAGCTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTAGAGAAGCTGGGATATCCACAGAGGCTGGTCTGGCAGCAGGTCATGGTGTTGGGAGTTGGACTGAGAGCTGGGTTGCTTGGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTTTATACATCTGAGCCAGCTGCTGTTTACCAAATTGTTAACATATTTTCTTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCTGATTGGCTTACATTGAAGTACTTATGACACATTATGAGCAATAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCCAGACTCCTCATATCAGTCCTTTGCTCTTTGGAATA-TGTTTGTGGTTTCCCATGTTCCAAGAGTCCTTCCATTTTAGTCCAAATGAATGCTCTCATTTTATATA-ATAGTTATTCCGTGTGACAATCTATCCAGACCTCTAAGGCTAAGAGTAACA--ATTGTGTTGTTATATTTAACTATTA-TTTTTTCCTCCGGGATAGATAGACTAAATTCTATTAAGTTTTGGATATCTGGATATCTACTGAATTGAAGGAGTACCTTTGGTCATGCATAATTCGCAGGTTTCGCCT-------TGTTTTGTTCCAATGTCGTATTGAATTACCATTTATAGTTCCTTTGATTTCAACCAATTTGAAATGTGTGAATATTATTCCTGTTACAGACCAGAAA--TCTGTTCTTGGGAACCAAACTGACATAGTAT-----------------------TTAGGAAGGTATCCAGCAGAGTCCTTAGTTTGTGGTAGAACCTTAATAAATGTTTGTTGAATCTGATTCAATAAATGTTTATTGA-ATAGGTGGAGTAAAAGGCATGATTCATGGATATCAATACCACTCCCACATAATTAAAGAGAAATTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTACTGTAAAGAGACTAGGAAATGTGTTTTTTGG----------TTTATTTT-----ATTTTATTTTTTGG-TTTAGTACTGGAACTGGG-CTCAGGAAAAAATATCTAGGAGTTGTGACGCTTTGAAGAATGTACTGCCATCTACTTTATTCCTGTTGGAAATTGTGTAATCTTGTGTGTAATCCATCATTGCTACCAAGTAAATGATAGAGGTAAGTTCTGGGAGCTTGTAAATAATGTGGAAAATATGTTCCT-------TTCTATATTTGCATCCCATTGTATTTTGTATATTACACTCTAATGCCTAATGAAGAGTTTAAAAATTAAATGATAAAATA i chlSab2.chr16 T 14772 C 0 s calJac3.chr5 112869283 1240 + 159171411 AGCCGCAGGTCCCACCGGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTGGCAGCAGC------------------------------------------------------------TTGGCTGGCAGCA------------------------------------------------GCTGGTCTGACAACAGGCCATGGTGTCGGGATTTGGGTTGAGAG----GTTGCTCAGAGGAGTTTCTGAGTTTTGGTGGTGACTTCCACACTGGCCCTTTTATATATCTGAGCCAGCTGCTGTTTACAAAATTCTTAACATATTTTCCTTG-TTTTTGTTTAAATTTGTTTCTCAGTGGATCTCTGATTGGTTTACATTGAAATACTTATGACACATAGTGAGCAACAGTTTAGAAATTACTCTGTTTTATAGTTTCTTCGGTACTCCTCATATCAGTCATTTGCTCTTTGGAGTA-TGTTTGTGGTTTCCCATGTTCAAAGAGTCTTTCCATCTTAGTCCAAATACATGCTCTCATTTTACGTA-TTAGTTATTCCACGTGACAATCTATCCAGACCTCTAAGGCTAAGAGTAACA--ATTGTGCTGTTTTATTTAACTATTA-TTTTTTCCTCCTGGATATATAGGCTAAACCCTCCTGAATTTTGGATATCTGGATATCTACTGAACGGAAAGAGTACCTTTGGTCATGCATAATTCATAGACTTCACCT-------TGTTTTATTCCAACGTCATACTGAATTAATGATTATAGTCCCTTTAATTTCAACCAATTTGGAATGTGTAAATATTATTCCCGTTCCAGGGCAGAAA--TCTTTTCTTGGGAACCAAATTGACACAGTAT-----------------------ATAGGAAGGTATCCAGCAGAATGCTTAGCTTGTGGTAGAACCTT---AAATGTTTATTGAATCTGATTCAATAAAGATTTATTGA-ATAGGTGGAGTAAAAGGCATGATTCATGGATGTCAATACCACTCATACATGATTAAAGAGAACTTTCAAGCTGTAGTACCTCTCATGAAAGAGTC-TTGTTATTTGCTGTAAAAAGACTAAGAAATGTG---------------TGTTTTCTTTT---------------TTAAATTAAGTAGTTGAATTGGG-CTAAAGAAAAAACATCTAGGAGTTATGACACTTTGAAGAATGTACTGCCATCTACTTTATTCCTCTCGGAAATTGCACAATCTTGTGTATAATCCATCATAGCTACCAATTAAATGATAGAGGTAAGTTCCAGGAGCTTGTAAATAATGTGGGAAATGTGTTTCTTAGTCTGTTCTATATTTGCATCTTATTGTATTTTATATATTGCACTCTAATGCCTAATGAAGAATTTAAAAATTAAGTGATAAAAGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99580901 1150 + 122082543 AGCCACAGGTGCCACCAGTGGAGCAAGTGGGAAAGCCACAGAAGCTAGT--------------------------------------------------------------------------------AGCA----------------------------------------------------------CAGCAGGCCATGTTGTCAGGAGTTGG-TTGGATGTTGAGTAGGTTGGATGAGTTTCTGAGTTTGGGAGCAAACCTGAGCATGGGGCCTTTTATATAGTCAAGCAAGTTGCTGTTTATAAAATTCTTAACATATTTTTCTTGTTTTTTGTTTAAATTTGTTCCTCAGTGGTCCTCTGATTGGCTTCCATTGAAATACTTGTGACATATTATGGG-GATGGTTT-----------TGTTTTATAAGGTCGCTGTGACTCGTTCTATTGGCCGCATACTCTTTGGAGTAGCGTTTGTGGTTT-CCATGTTCAAAGAGTCTTCTTACTGTAGGTTAAGACAACACCCTTACTCTGAATA-GTTGTCATTCCACTTGGCCGTCTAGCCAAACCTCTGAAGCAGAAGGCCATATGACTGCCT-------TTCAAGCATTA-TTTTTCTCTCTTGCATAGATAGACTAAATTCTATTGAATTTAAAGCATTGGTGTATTTGCCAAATTGAG--------------CATACAT-----GTAACATCTACCC-------CA-TCGACACTGTCACCATAATCAAATGGTCTTCGTAGCTCTTTCCATTTCAATAGATTGGAAATGTGTAAGCGTTATTTGTATTTCAGGCCAGAGAGTTCTTTCACTGTGAACTAAA-TGACTTGTTTTTATTTTTTTTTTTTCTTTTTCTCTTCAGAAAGTATCCAGA--------CTGATTTTCGCATATTCTTATTAAATGTTTACTGAATCTGATTCAGGGGTGATTAACTAAGGGGGGCGGAGTATAGGGTATGATTCATGAACGCCTGAACCACTCAAGAGTGAGT-AAGAGCACTTTCAAGTTGTAGCGCTGCCCACAAAGACTTC-------TTTGCCGTGAAGACAGTAGGGAATAG----------------TGAGCTATTTT------------TGTCTGAATTTAGTGGTTGGAAAAAG-CTTGAG-AAAAATATCTAGGA--------------------GTACAGTCATTCAATTCTCTCTTTTCTGGAA-TGTACCATTCTATTTGTAATCCATCGTTGCTGCCAATTTAATGAGAGAGGTAAGTGGTGGGGACTTGTAAATATCCTGAAAAAAAAAGTCTT-----------------AAGTCTTTATGTATTTTGTGTATT-TAGTCAACTGCTTATATAAGAACT--AAAATTACATGATAGACTC i mm10.chr11 C 0 C 0 s canFam3.chr9 39420903 1244 - 61074082 -------------------------gctgg--------cagcagctggtctggcagctgg------------------------------ttggctggcAGCAGCTGGTCTGACAGCAGCTAGGCTGGCAGCAGCTGGAGCCACAGTTCCCACTGGTGGAGCAGGTGGGAAATCCACAGAAGCTAGTGGAGCAGCAGGCCATG--GTCAGGAGCTGGGTTGAGAGTTGGGTTGCTTGGAGGTGT--------TTTGGTGGTAAGGTCTATGTCAGGCCTTTTATATATCTGAGCCAGCTTCTATTTATAAAATTCTTAACATATCTTCCTTG-TTTTTGTTTAAATTTGTTCCTCATTGGTCCTCTGATTGGCTTACATTGAAATACTTATGACCCATTATGAGCAGCAGTTTAGAAATTACTTCGTTTTATAGTTTCATTTGAACTCCTCATATTGGTCCTTTGCCCTTTGGAATA-CATTTGTGGTTTTCCATGTTCAAAGAGTCTGTCCATTTTACTCCATGTCAACACCCTCATTTTGTAGAGGTGGTTATTCCACGTGACACTCTATTCATATCTCTAAGGCTAAGG---ATA--ATTGTGCTTTTATTTTCAACTATTATTTTTTTCCTTCTGGCTGTATAGACTGAATTCTGTTGAGTTTAGGACATTGGGACTTCCTCTGAATAGAA-GAGTACCTTTGGTTATACGTAACTAAAAGCTTC------------TAGTTTACTCCAACATCACATCAAATTACTG-TTATAATTTCTTTGATTTCAATCAGTTTGAAATATGTAAATATTGTTCATGTTCTAGATGAGAAA--TCTTTTCTTGTGAACCAAG-TGACATAGTTT-----------------------ATATAAAGGTATCTAGCAGAGTGCTAAGCCTCAGGTAGAACTTCAGTAAATGCTCACTGAATCTGATT-------------TTGA-ATAGGTGGAGTAAAAGGCATGATTCATGGACACATGGACCACTTACAAATGATTTAATAGAACTTTCAAGCTGTAGCGCCGTCCATGGAGGAGTCCCTGTCATTGTCA--AAAGAGACTAGGAAGTGC----------------TGAAATATTTT--------------TCTACATTGAATAGTTGAACCAAGTCTCAGGGAAAACCATCTGGGATTTATGATGTTTTGAAGAATGCATCGCCATTTATTATATTC---TTTGAAATT-----------CATTTGATCTATCATTGCTGCCAATTAAATGATAGAGGTAAGTGCTGGGATCTTGTAAATAACTTGGAAAATATTTTACATAAAGTGTCCTATATTT-TGTCCTATTTTATTTTGGATGTTGCATTAAAATACTTAATGAGGAATT-AAAAATTAAATGGTAAAATG i canFam3.chr9 C 0 C 0 a score=18316.000000 s hg38.chr17_JH159146v1_alt 177708 6 + 278131 TGTTTT s panTro4.chr17 66296846 6 - 82630442 TGTTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8509281 6 - 17838096 TGTTTT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48057021 6 - 81552678 TATTTT i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52723945 6 + 80997621 TGTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47726722 6 + 74645514 tgtttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9993505 6 - 75148670 TATTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112870523 6 + 159171411 TATTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99582051 6 + 122082543 TACCTC i mm10.chr11 C 0 C 0 s canFam3.chr9 39422147 6 - 61074082 TATTTT i canFam3.chr9 C 0 I 13 e rheMac3.chr16 53158413 1328 + 80904711 M a score=46482.000000 s hg38.chr17_JH159146v1_alt 177714 16 + 278131 GTTTTGTTCTAGGTTG- s panTro4.chr17 66296852 16 - 82630442 GTTTTGTTCTAGGTTG- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8509287 16 - 17838096 GTTTTGTTCTAGGTTG- i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48057027 16 - 81552678 GTTTTGTTCTAGGTTG- i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52723951 16 + 80997621 GTTTTGTTCTAGGTTG- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47726728 16 + 74645514 gttttgttctaggttg- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9993511 16 - 75148670 GTTTTGTTCTAGGTTG- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112870529 16 + 159171411 GTTTTGTTCTAGGTTA- i calJac3.chr5 C 0 C 0 s mm10.chr11 99582057 17 + 122082543 CTTTTGTTCTAGGTTTG i mm10.chr11 C 0 C 0 e canFam3.chr9 39422153 13 - 61074082 I e rheMac3.chr16 53158413 1328 + 80904711 M a score=11226.000000 s hg38.chr17_JH159146v1_alt 177730 12 + 278131 TGTTAA-----ttt---ttt s panTro4.chr17 66296868 12 - 82630442 TGTTAA-----ttt---ttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8509303 17 - 17838096 TGTTAAAttttttt---ttt i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48057043 8 - 81552678 TG---------Ctt---ttt i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52723967 13 + 80997621 TGTTAA-----Cttc--ttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47726744 13 + 74645514 tgttaa-----cttc--ttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9993527 15 - 75148670 TGTTAA-----Cttcttttt i chlSab2.chr16 C 0 C 0 s mm10.chr11 99582074 12 + 122082543 TGTTAA-----CTT---CTT i mm10.chr11 C 0 I 4 e canFam3.chr9 39422153 13 - 61074082 I e calJac3.chr5 112870545 0 + 159171411 C e rheMac3.chr16 53158413 1328 + 80904711 M a score=258200.000000 s hg38.chr17_JH159146v1_alt 177742 153 + 278131 ttttt-----gagacagagtcttgct-tgttgcccaggctggagtgcagtggcgtgatcttggctcactgcaagctctgcctcccaggttcacgccatactcctgcctcagcctcccaagtagctgggactgcaggcacccacgaccacacctgactaa s panTro4.chr17 66296880 158 - 82630442 ttttttttttgagacagagtcttgct-tgttgcccaggctggagtgcagtggcgtgatcttggctcactgcaagctctgcctcccaggttcacgccatactcctgcctcagcctcccaagtagctgggactgcaggcacccacgaccatgcctggctaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8509320 159 - 17838096 ttttttttttgagacagagtcttgctctgttgcccaggctggagtacagtggcatgatcttggctcactgcaaactccacctcctgggttcacgccatactcctgcctcagcctcccgagtagctgggactgcaggcacccacaaccacacctggctaa i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48057051 154 - 81552678 ttttt-----gagacagagtcttgctctgttgcccaggctggagtgcagtggcatgatctcagctcactgcaagctccccctcccgggttcacaccattctcctgcctcagcctcctgagtagctgggactacaggtgcccaccaccatgcctggttaa i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52723980 159 + 80997621 tttttttttttagacagagtctcgctctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaagctccgcctcccgagttcatgcccttctcctgcctcagcctcctgagtagctgggactacaggtgtccactaccatgcccgactaa i macFas5.chr16 C 0 I 25 s papAnu2.chr16 47726757 159 + 74645514 tttttttttttagacagagtctcgctctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaagctccgcctcctgagttcatgcccttctcctgcctcagcctcctgagtagctgggactacaggtgtccactaccatgcccggctaa i papAnu2.chr16 C 0 I 7 s chlSab2.chr16 9993542 159 - 75148670 tttttttttttagacagagtctcgctctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaagctccgcctcccgagttcatgcccttctcctgcctcagtctcctgagtagctgggactacaggtgtctactaccatgcccggctaa i chlSab2.chr16 C 0 I 13 e canFam3.chr9 39422153 13 - 61074082 I e mm10.chr11 99582086 4 + 122082543 I e calJac3.chr5 112870545 0 + 159171411 C e rheMac3.chr16 53158413 1328 + 80904711 M a score=300304.000000 s hg38.chr17_JH159146v1_alt 177895 135 + 278131 tttttttttt----gta-tttttagtaaagactgggtttcaccatattagtcaggatggtctcaatctcctgacctcgtgatccacccatctcagcctcccaaagtgctgggattacaggcgtaagccaccgtgtccagc s panTro4.chr17 66297038 138 - 82630442 tttttttttt-tttgta-tttttagtaaagagtgcgtttcaccatattagccaggatggtcttgatctcctgacctcgtgatccacccatctcagcctcccaaagtgctgggattacaggcgtaagccaccgtgcccagc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8509479 139 - 17838096 ttttttttttttttgta-tttttagtaaagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacctgtctcggcctcccaaagtgctgggattacaggcgtaagccactgcgcccagc i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48057205 138 - 81552678 tttttttttt-tttgta-tttttagtaaagacggggtttcaccatgttagccaacatggtctcgatctcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggcgttagccaccacgcccagc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53159771 136 + 80904711 tttttttttt----gtattttttggtaaagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatctgctcgcctcggcctcccaaagtgctgggattacaggcatgagccactgtgcccggc i rheMac3.chr16 M 1328 C 0 s macFas5.chr16 52724164 136 + 80997621 tttttttttt----gtattttttggtaaagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatctgctcgcctcggcctcccaaagtgctgggattacaggcatgagccactgtgcccggc i macFas5.chr16 I 25 C 0 s papAnu2.chr16 47726923 136 + 74645514 tttttttttt----gtattttttagtaaagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcatgagccactgtgcccggc i papAnu2.chr16 I 7 C 0 s chlSab2.chr16 9993714 136 - 75148670 tttttttttg----gtattttttagtaaagacagggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgagattacaggcatgagccactatgcccggc i chlSab2.chr16 I 13 C 0 e canFam3.chr9 39422153 13 - 61074082 I e mm10.chr11 99582086 4 + 122082543 I e calJac3.chr5 112870545 0 + 159171411 C a score=3600.000000 s hg38.chr17_JH159146v1_alt 178030 1 + 278131 G s panTro4.chr17 66297176 1 - 82630442 G i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8509618 1 - 17838096 G i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48057343 1 - 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53159907 1 + 80904711 G i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52724300 1 + 80997621 G i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47727059 1 + 74645514 g i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9993850 1 - 75148670 G i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39422166 1 - 61074082 G i canFam3.chr9 I 13 C 0 e mm10.chr11 99582086 4 + 122082543 I e calJac3.chr5 112870545 0 + 159171411 C a score=49230.000000 s hg38.chr17_JH159146v1_alt 178031 13 + 278131 TGTTAACTTCTTA s panTro4.chr17 66297177 13 - 82630442 TGTTAACTTCTTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8509619 13 - 17838096 TGTTAACTTCTTA i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48057344 13 - 81552678 TGTTAACTTTTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53159908 13 + 80904711 TGTTAACTTCTTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52724301 13 + 80997621 TGTTAACTTCTTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47727060 13 + 74645514 tgTTAACTTCTTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9993851 13 - 75148670 TGTTAACTTCTTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112870545 13 + 159171411 TGTCAACTTCTTA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39422167 13 - 61074082 TGTTAACTTCCTA i canFam3.chr9 C 0 C 0 e mm10.chr11 99582086 4 + 122082543 I a score=1848242.000000 s hg38.chr17_JH159146v1_alt 178044 503 + 278131 AGAGAATATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATCGAGCTGTTTCAGATTTCTAACACTTCTGTCTGACAAATGGCAATGGTAGAACTCA---GCGGGTGCTCTCTATAGCTG-TTTCTTCTACTATCATTTAGACCAAAGATACACCTTATGCA----TACGTACATCAAATGAAGGTGAATAGTGGGAGTTGAAGCTTAGAGAGCAATTCAAGGATCAGTGGGAAGAATGTGAAAGGCTAAGGTGTAGAAATTAAACCTAAATTCTCTTGGAAA----------ATAGGTAGTATCTAGTAGCTATTTTTAAATCTATTTAGAAGGTAATG---CAATTTCTTTAGATTTTGGGGCATAAATGAAGGAGAA-CATTTAGTATAT----TAAATGGAAGGAGACAAAAGATGGTAGAATTACATTTAGATAGAAAT-CAATAGCTTTGATCAACCTTAACATTTTAGCTAAAGG----TCAACCTTTATTGGTCTAGACCTAATCATAATAGATTAGAGCATGT s panTro4.chr17 66297190 503 - 82630442 AGGGAATATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATCGAGCTGTTTCAGATTTCTAATGCTTCTGTCTGACAAATGGCAATGGTAGAACTCA---GCGGGTGCTCTCTATAGCTG-TTTCTTCTACTATCATTTAGACCAAAGATACACCTTACGCA----TACGTACATCAAATGAAGGTGAATAGTGGGAGTTGAAGCTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGTGTAGAAATTAAACCTAAATTCTCTTGGAAA----------ATAGGTAGTATCTAGTAGATATTTTTAAATCTATTTAGAAGGTAATG---CAATTTCTTTAGATTTTGGGGCATAAATGAAGGAGAA-CATTTAGTATAT----TAAATGGAAGGAGACAAAAGATGGTAGAATTACATTTAGATAGAAAT-CAATAGCTTTGATCAACCTTAACATTTTAGCTAAAGG----TCAACCTTTATTGGTCTAGACCTAATCATAATAGATTAGAGCATGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8509632 503 - 17838096 AGAGAATATCTTTTAAGTTGGGTTGCAAAGTGCCAAATATAATAGAGCTGTTTCAGATTTCTAATGCTTCTGTCTGACAAATGGCAATGGTAGAACTCA---GCGGGTGCTCTCTATAGCTG-TTTCTTCTACTATCATTTAGACCAAAGATACACCTTATGCA----TACCTACATCAAATGAAGGTGAATAGTGGGAGTTGAAGCTTAGAGAGCAATTCAGAGATCAGTGGGAAGAATGTGAAAGGCTAAGGTGTAGAAATTAAACCTAAATTCTCTTGGAAA----------ATAGGTAGTATCTAGTAGATATTTTTAAATCTATTTAGAAGGTAATG---CAATTTCTTTAGATTTTGGGGCATAAATGAAGGAGAA-CATTTAGTATAT----TAAATGGAAGGAGACAAAAGATGGTAGAATTACATTTAGGTAGAAAT-CAATAGCTTTGATCAACCTTAACATTTTAGCTAAAGG----TCAAGCTTTATTGGTCTAGACCTAATCATAATAGATTAGAGCATGT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48057357 504 - 81552678 AGAGAACATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATAGAGCTGTTTCAGATTTCTAACGCATCTGTCTGACAAATGGCAATGGTAGAACTCA---GCGGGTGCTCTCTATAGCTGTTTTCTTCTACTATCATTTAGACCAGAGATACACCTTATGCA----TACCTACATCAAATGAAGGTGAATAGTGGGAGTTGAAACTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGTGTAGAAATTAAACCTAAATACTCTTGGAAA----------ATAGGTAGTATCTAGTAGATATTTTTAAATCTATTTAGAAGGTAATG---CAATTTCTTTAGATTTGGGGGCACAAATGAAGAAGAA-CATTTAGTATAT----TAAATGGAAGGAGACAAAAGATGGTAGAATTACATTTAGGTAGAAAT-GAATAGCTTTGATCAACTTTAAAATTTTAGCTAAAGG----TCAACCTTTATTGGTCTAGACCTAATCATAATAGATTAGAGCATGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53159921 507 + 80904711 AGAGAACATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATAGAGCTGTTTCAGATTTCTAACGCATCTGTCTGACAAATGGCAACAGTAGAACTCA---GCAGGTGCTCTCTATAGCTG-TTTCTTCTATTATAATTTAGACCAGAGATACACTTTATGCATACCTACCTACATCAAATGAAGGTGAATACTGGGAGTTGAAGCTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGCGTAGAAATTAAACCTAAATACTCTTGGAAA----------ATAGGTAGTATCTGGTAGATATTTTAAAATCTATTTAGAAAGTAATA---CAATGTCTTTAGATTTGGGGGCATAAATGAAGGAGAA-TATTTAGTATAT----AAAATGGAAGGAGACAAAAGATAGTAGAATTACATTTAGGTTGAAAT-CAATAGCTTTGATCAACCTTAAAATTTTAGCTGAAGG----TCAACCTTTATTGGTCTAGACCTAATTGTAATAGATTAGAGCATGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52724314 507 + 80997621 AGAGAACATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATAGAGCTGTTTCAGATTTCTAACGCATCTGTCTGACAAATGGCAACAGTAGAACTCA---GCAGGTGCTCTCTATAGCTG-TTTCTTCTATTATAATTTAGACCAGAGATACACTTTATGCATACCTACCTACATCAAATGAAGGTGAATACTGGGAGTTGAAGCTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGCGTAGAAATTAAACCTAAATACTCTTGGAAA----------ATAGGTAGTATCTGGTAGATATTTTAAAATCTATTTAGAAAGTAATA---CAATGTCTTTAGATTTGGGGGCATAAATGAAGGAGAA-TATTTAGTATAT----AAAATGGAAGGAGACAAAAGATAGTAGAATTACATTTAGGTTGAAAT-CAATAGCTTTGATCAACCTTAAAATTTTAGCTGAAGG----TCAACCTTTATTGGTCTAGACCTAATTGTAATAGATTAGAGCATGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47727073 510 + 74645514 AGAGAACATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATAGAGCTGTTTCAGATTTCTAACGCATCTGCCTGACAAATGGCAACGGTAGAACTCAACGGTAGGTGCTCTCTATAGCTG-TTTCTTCTATTATAATTTAGACCAGAGATACACTTTATGCATACCTACCTACATCAAATGAAGGTGAATACTGGAAGTTGAAGCTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGCATAGAAATTAAACCTAAATACTCTTGGAAA----------ATAGGTAGTATCtggtagatattttaaaatctatttagaaAGTAATA---CAATGTCTTTAGATTTGGGGgcataaatgaaggagaa-tatTTAGTATAT----AAAATGGAAGGAGACAAAAGATGGTAGAATTACATTTAGGTTGAAAT-CAATAGCTTTGATCAACCTTAAAATTTTAGCTGAAGG----TCAACCTTTATTGGTCTAGACCTAATTGTAATAGATTAGAGCATGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9993864 503 - 75148670 AGAGAACATCTTTTAAGTTGGGTTGCAAAGTGCAAAATATAATAGAGCTGTTTCAGATTTCTAACGCATCTGTCTGACAAATGGCAATGGTAGAACTCA---GCAGGTGCTCTCTATAGCTG-TTTCTTCTATTATAATTTAGACCAGAGATACACCTTATGCA----TACCTACATCAAATGAAGGTGAATACTGGGAGTTGAAGCTTAGAGAGCAATTCAGGGATCAGTGGGAAGAATGTGAAAGGCTAAGGCATAGAAATTAAACCTAAATACTCTTGGAAA----------ATAGGTAGTATCTGGTAGATATTTTAAAATCTATTTAGAAAGTAATA---CAATGTCTTTAGATTTGGGGACATAAATGAAGGAGAG-TATTTAGTATAT----AACATGGAAGGAGACATAAGATGGTAGAATTACATTTAGGTTGAAAT-CAATAGCTTTGATCAACCTTAAAATTTTAGCTGAAGG----TCAACCTTTATTGGTCTAGACCTAATCTTAATAGATTAGAACATGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112870558 501 + 159171411 AGAGAAAATCTTTTAAGTTGGGTTGCAAAGTACAAAATATAACAGAGCTGTTTCAGATTTCGAATGCATCTGTCTGACAAATGGCAATGGTAGAACTCA---GTGGGTGCT-TTTATAGCTG-CTTATTCTACTGTCATTTAGACTAGAGATATACCTTATGCA----TACCTACATCAAATGAAGGTGAATAGTGGGAGTTGAAGCTTAGAGAGCAATTCAGGGATCAATGGGAAGAATGTGAAAGGCTAAGGTATAGAAATTAAACCAAAATACTCTTGGAAA----------ATAGGTAATATCTAGTAGATATTTTAAAATCTATTTAGAAGGCAGTA---CAATTTCTTTAGATGTTGGG-CATAAATGAAGGAGAG-CATCTAGTATAT----TAAATGGAAGGAGACAAAAGATGGTAGAAGTACATTTAGGTAGAAAT-CGATAGCTTTGATCAACTTTAAAATTTTAGCTGCAGG----TCAACTTTTATTGGTCTAGACCTAATCATAATCAATTAAAGCATGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99582090 433 + 122082543 AAGGCATTTTTTTTCAATTGGATTGCAAATTATAAATTGTGATATTGCTGTTTGAGATTTCTAAGGCATTTGTATGAT-----GTGGTGGTGGAATTCA---GCAGTTATACCTCAAAGCTG-CTTGCTCTACTCTTATCTAGTACAGATGTATCCCTCATACA--------CCCAGTAAGTGCAGGTGAATACTGGGAGTTGAAGTTTATACAGC----TGGAGATCAGCAGAATGGAGTT---AGGCCAAGTTGTAGGAACTGAACCCAAGTTCTATTGGAAA---------------TGGTAT-TGGCAGATATTTAGCAAAAGAGTTAGTAGATAATAATCTAGTTTCTTTATGTT---GTGCATGGATAAAGAAAAATCATCTACTGTAT----TAAATGGGACAAGGTTTGAGTTGGTATAA-------------AAAGT-CCA----------------------------TGAAGG----GTAA-CTCTATTGGTCTGGGTCC-ATTTTAATA------AACATTC i mm10.chr11 I 4 C 0 s canFam3.chr9 39422180 509 - 61074082 AGAGAACATCTTTCAAATTGGATTACAAAGTGCAACATATA------TAGTTTGAGATATCTAATGCATGTGTCTGACCATTGGTGTTGGTAGAACTCA----CAGAAAATCTCCCTGGCTT-TTTGTTCTACCCTCATTTAGATC--AGATACACTTTATACA----CACTTACAGTAAATGGAGGTGAGTGTTGGGAGTTGAAATTTGAAGAGTAATTTGGGGATCAGTGGGAAGAATATAATAGGCTAAGACATAGGAATTAAACCTAAATGCTCTTGGAAAATGCCATCTAATAGATAGTATCTGGTAGATATTTTAAAATCTATTTAGTAAGTAATA---TAA--TCTTTAGATATTAGG-CATGCATAAAGGAGAACCATCTGGTGTATAAACTAACTGCAAGGAGATTAAA-ATGGTAGAGGTATATCTAGGTGGAAATCCCATAGATTTGAGCAACCTAAAATTTTTAGCCAAAAGTGGCTTTAGGTCTATT-GTCTAGACCTAATCATAATAGGTTAGAGCATTT i canFam3.chr9 C 0 I 157 a score=42641.000000 s hg38.chr17_JH159146v1_alt 178547 11 + 278131 AAATATTTGAA s panTro4.chr17 66297693 11 - 82630442 AAATATTTGAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8510135 11 - 17838096 AAATATTTGAA i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48057861 11 - 81552678 AAATATTTGAA i nomLeu3.chr19 C 0 I 171 s rheMac3.chr16 53160428 11 + 80904711 AAATATTGGAA i rheMac3.chr16 C 0 I 3 s macFas5.chr16 52724821 11 + 80997621 AAATATTGGAA i macFas5.chr16 C 0 I 3 s papAnu2.chr16 47727583 11 + 74645514 AAATATTAgaa i papAnu2.chr16 C 0 I 3 s chlSab2.chr16 9994367 11 - 75148670 AAATATTGGAA i chlSab2.chr16 C 0 I 3 s calJac3.chr5 112871059 11 + 159171411 AAGTATTTGAA i calJac3.chr5 C 0 I 3 s mm10.chr11 99582523 11 + 122082543 ACACATTTAAA i mm10.chr11 C 0 I 3 s canFam3.chr9 39422846 11 - 61074082 AAGTATTTGAA i canFam3.chr9 I 157 I 3 a score=14589.000000 s hg38.chr17_JH159146v1_alt 178558 4 + 278131 CTAT s panTro4.chr17 66297704 4 - 82630442 CTAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8510146 4 - 17838096 CTAT i ponAbe2.chr17_random C 0 C 0 s rheMac3.chr16 53160442 4 + 80904711 CTAT i rheMac3.chr16 I 3 C 0 s macFas5.chr16 52724835 4 + 80997621 CTAT i macFas5.chr16 I 3 C 0 s papAnu2.chr16 47727597 4 + 74645514 ctat i papAnu2.chr16 I 3 C 0 s chlSab2.chr16 9994381 4 - 75148670 CTAT i chlSab2.chr16 I 3 C 0 s calJac3.chr5 112871073 4 + 159171411 CTGT i calJac3.chr5 I 3 I 1 s mm10.chr11 99582537 4 + 122082543 CCAT i mm10.chr11 I 3 C 0 s canFam3.chr9 39422860 4 - 61074082 CTAT i canFam3.chr9 I 3 C 0 e nomLeu3.chr19 48057872 171 - 81552678 I a score=3188925.000000 s hg38.chr17_JH159146v1_alt 178562 834 + 278131 AAAAATTCTTTAATTCATGGAGCATTTT-TAAGCTGATGGATTCAAGCATAATTTACTTTGTATTTAATCTTTCTGGTTTAGACTTTATGGTTATGCCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCTACAAGAAGACATGTTTAAAGGTAGAA-GGAGGACATAACTCAGTTTGCTT-TGCACATTAAAACATTTTATTTG-GATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGAGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCC-TGGTCCTCTGCTCAAGCAACGCAAGCTATCCAGA-ACA--CTGATTGATACATCT-TTCAGTAAGTGAATT-CGGCACATCCAC-AGTG-TCCTAACTAGGAGTTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAGCATCCAAGTAAAATCGAACAGTTCTTCAGAAATCAGCACAATTTTGCTGTGCTTCCCCTTTCATTCTTAAGCGATCAGCAACCTGGCTTTT------------------------------AGCAGGTGGGCTCACAGCAGTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGTAGCAGGGGGGCAGGCAGGTGCCCTCCACGTGGCAATCTGGGTGGCACCACCTGATACGGGTGCTCACAGATCCACCGCTGCCCTCCTGGCCATAGCCAATGCCACCACCAATGCCACAGC--------------------------CGGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGC--------------------------------------------------------------------------- s panTro4.chr17 66297708 833 - 82630442 AAAAATTCTTTAATTCATGGAGCATTTT-TAAGCTGATGGATTCAAGCATAATTTACTTTGTATTTAATCTTTCTGGTTTAGACTTTATGGTTATGCCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCTACAAGAAGACATGTTTAAAGGTAGAA-GGAGGACATAACTCAGTTTGCTT-TGCACATTAAAACATTTTATTTG-AATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGA-GCATGAGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCC-TGGTCCTCTGCTCAAGCAACGCAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTAAGTGAATT-TGGCACATCCAC-CGTG-TCCTAACTAGGAGTTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAGCATCCAAGTAAAATCGGACAGTTCTTCAGAAATCAGCACAATTTTTCTGTGCTTCCCCTTTCATTCTTAAGCGATCAGCAACCTGGCTTTT------------------------------AGCAGGTGGGCTCACAGCAGTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGTAGCAGGGGGGCAGGCAGGTGCCCTCCACGTGGCAATCTGGGTGGCACCACCTGATACGGGTGCTCACAGCTCCACCGCTGCCCTCCTGGCCATAGCCAATGCCACCACCAATGCCACAGC--------------------------CAGTTCCGCAGTAGCTGGTCTGGCAGCAGCTTGGC--------------------------------------------------------------------------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8510150 834 - 17838096 AAAAATTCTTTAATTCATGGAGCATTTT-TAAGCTGATGGATTCAAGCATAATTTACTTTGTATTTCATCTTTCTGGTTTAGACTTTATAGTTATGCCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCTACAAGAAGACATGTTTAAAGGTAGAA-GGAGGACATAACTCAGTTTGCTT-TGCACATTAAAACATTTTATTTG-AATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGCAGATGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCA-TGGTCCTCTGCTCAAGCAATGCAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTAAGTGAATT-CGGCACATCCAC-AGTG-TCCTAACTAGGAGTTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAACATCCAGGTAAAATCGAACAGTTCTTCAGAAATCAGAACAATTTTGCTGTGCTTCCTCTTTCATTCTTAAGCGATCAGCAACCTGGCTTTT------------------------------AGCAGGTGGGCTCACAGCAGTCGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGCAGCAGGGGGGCAGGGAGTTGCCCTCCACACGGCAATCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCACAGC--------------------------CAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGC--------------------------------------------------------------------------- i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48058043 833 - 81552678 aaaAATTATTTAATTCATGGAGCATTTT-TAAGCTGATGGATTCAAGCATAATTTAATTTGTATTTAATCTTTCTGGTTTAGACTTTATGGTTATGCCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCTACAGGAAGACATGTTTAAAGGTAGAA-GAAGGACATAGCTCAGTTTGCTT-TGCACCTTAAAACATTTTATTTG-AATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGGGCATCAAGAGAGAGTTGAGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCC-TGGTCCTCAGCTCAAGCAAAGCAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTGAGTGAATT-CGGCACATCCAC-AGTG-TCCTAACTAGGAGCTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAGCATTCAAATAAAATCGAACAGTTCTTCAGAAATCAGCACAATTTTACTGTGCTTCCCTTTTCATTCTTAAGTGATCAGCAACCTGGC-TTT------------------------------AGCAGGTGGGCTCACAGCAGTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGCAGCAGGGGGGCAGGCAGGTGCCCTCCATGCGGCAATCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGgccatagccaatgccaccaccaatgccacagc--------------------------caGTTCCGCAGGAGCTGGTTTGGCAGCAGCTTGGC--------------------------------------------------------------------------- i nomLeu3.chr19 I 171 C 0 s rheMac3.chr16 53160446 833 + 80904711 -AAAATTATTTAATTCATGGAGCATTTC-TAAGTTGATGGATTCAAGCATAATTTACTTTGTATTTAATCTTTCTGGTTTAGACTTTGTGGTTATACCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCCACAGGAAGACATGCTTAAAGGTAGAA-GGTGGACATAACTCAGTTTGCTT-TGCACATTAAAACATTTTATTTG-AATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCT-TGGTCCTCTGCTCAAGCAACGTAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTGAGTGAATT-CGGCACATCCAC-AGTG-TCTTCACTAGGAGTTTCATTATCTCTGAGCAGGTTAACAACATCATGGTACTTAGCATCCAAGTAAAATTGAACAGTTCTTCAGAAATCAGCATAATTTTGCTGTGCTTCCCCTTTCATTCGTAAGCGATCAGCAACCTGGTTTTT------------------------------AGCAGGTGGGCTCACAGCATTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGCCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCAGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGCAGCAGGGGGGCAGGCAGGTGCCCTCCACGCGGCAATCTGGGCGGCACCACCTGATACGGGTCCTCACAGCTCCACCCATGCCCTCCTGGCCACAGCTGATGCTACCACCAATGCCACAGC--------------------------CAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGC--------------------------------------------------------------------------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52724839 833 + 80997621 -AAAATTATTTAATTCATGGAGCATTTC-TAAGTTGATGGATTCAAGCATAATTTACTTTGTATTTAATCTTTCTGGTTTAGACTTTGTGGTTATACCTTGGCATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCCACAGGAAGACATGCTTAAAGGTAGAA-GGTGGACATAACTCAGTTTGCTT-TGCACATTAAAACATTTTATTTG-AATTAATCAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCT-TGGTCCTCTGCTCAAGCAACGTAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTGAGTGAATT-CGGCACATCCAC-AGTG-TCTTCACTAGGAGTTTCATTATCTCTGAGCAGGTTAACAACATCATGGTACTTAGCATCCAAGTAAAATCGAACAGTTCTTCAGAAATCAGCATAATTTTGCTGTGCTTCCCCTTTCATTCGTAAGCGATCAGCAACCTGGTTTTT------------------------------AGCAGGTGGGCTCACAGCATTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGCCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCAGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGCAGCAGGGGGGCAGGCAGGTGCCCTCCACGCGGCAATCTGGGCGGCACCACCTGATACGGGTCCTCACAGCTCCACCCCTGCCCTCCTGGCCACAGCTGATGCTACCACCAATGCCACAGC--------------------------CAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGC--------------------------------------------------------------------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47727601 831 + 74645514 -aaaattatttaattcatgGAGCATTTC-TAAGTTGATGGATTCAAGcataatttactttgtttttaatctttctggTTTAGACTTTGTGGTTATACCTTGGTATTATTATCAAATTGCGAATCCACT--------CTTAAATACCAGCCACAGGAAGACATGCTTAAAGGTAGAA-GGTGGACATAACTCAGTTTGCTT-Tgcacattaaaacattttatttg-aattaatcAGAG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCC-TGGTCCTCTGCTCAAGCAACGTAAGCTATCCAGA---A--CTGATTGATACGTGT-TTCAGTGAGTGAATT-CGGCACATCCAC-AGTG-TCTTCACTAGGAGTTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAGCATCCAAGTAAAATCGAACAGTTCTTTAGAAATCAGCATAATTTTGCTGTGCTTCCCCTTTCATTCGTAAGCGATCAGCAACCTGGTTTTT------------------------------AGCAGGTGGGCTCACAGCATTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGCCCACAGTAGGATGGACGGCAGCAGGAGGCCTcagcatggtgcagctggcagcaggatgggggtgtgcagcttaccaggcagcaggggggcaggcaggTGCCCTCCACGCGGCAATCTGGGCGGCACCACCTGATACGGGTCCTCACAGCTCCACCCCTGCCCTCCTGGCCACAACTGATGCTACCACCCATGCCACAGC--------------------------CAGTTCCgcaggagctggtctggcagcagcttggc--------------------------------------------------------------------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9994385 833 - 75148670 -AAAATTATTTAATTCATGGAGCATTTC-TAAGTTGATGGATTCAAGCATAATTTACTTTGTATTTAATCTTTCTGGTTTAGACTTTGTGGTTATACCTTGGTATTATTATCAAATTGCAAATCCACT--------CTTGAATACCAGCCACAGGAAGACATGCTTAAAGGTAGAA-GGTGGACATAACTCAGTTTGCTT-TACACATTAAAACATTTTATTTG-AATTAATCAGTG-ATATTCAAGGAAAAACCAGGTCTGAAGATGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGATGTCACTGAAATGATGAACTATTCCATCC-TGGTCGTCTGCTCAAGCAACGTAAGCTATCCAGA-ATA--CTGACTGATACGTGT-TTCAGTGAGCGAATT-CGGCACATCCAC-AGTG-TCCTCACTAGGAGTTTCATTATCTCTGAGCAGCTTAACAACATCATGGTACTTAGCATCCAAGTAAAATTGAACAGTTCTTCAGAAATCAGCATAATTTTGCTGTGCTTCCCCTTTCATTCGTAAGCGATCAGCAACCTGGTTTTT------------------------------AGCAGGTGGGCTCACAGCATTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGCCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCAGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTACCAGGCAGCAGGGGGGCAGGCAGGTGCCCTCCACACGGCAATCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACCCCTGCCCTCCTGGCCACAGCTGATGCTACCACCAATGCCACAGC--------------------------CAGTTCCGCAGGAGCTGGTCTGGCAGCAGCTTGGC--------------------------------------------------------------------------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112871078 854 + 159171411 AACATTTATTTAATTCCTGGAGCATTTT-TAA---GATGGATTCAAGCATAATTTACTTTGTACTTAATCTTTCTCGTTTAGACTTTATGGTTATGCCTTGGTATTATTAATATAATGCACCTCCACT--------CTTGAATTCCAACTACAGGAAGACATGCTTAAAGGGAGAA----GGACATAACTCAGTTTGCTT-TGCACATTAAGATATATAACTTG-AATTAATCGGTG-ATATTCAAGGAAAAACCAGGTCTGAAGGTGCATGGGCATCAAGAGAGAGTTGGGGGAGCAGAGAAGTCCCTGAAATGATGAACCATTCCATCC-CGGTCCTCTGCTCCAGCAAGGCAAGCTATCCAGA-ACA--CTGATTGATACATGT-TTCAGTGAGCAAATT-CAGCACATCCAC-AGTG-TGCTAGCTAGAAGTTTCATGATGTCTGAACAGCTTAGCAACATCATGGTACTTAGCATCCAAGTACAATTGAACAATTCTTCATAAATCAGCACAATTTTGCTGTGCTTCCCCTTTCATCCTTAAGCGATCAGCAACCTGGCTTTT------------------------------AGCAGGTGGGCTCATGGCGGTGGCAGCAGCAGGCTGGATGGCAGTAGGACTGTCCACAGTAGGATGAGCTGCAGTGGGAGGCCTGGGTGTGGTGCAGCTGGCAGCAGGATGGGGGCATGCAGCTCTCCAGGCAGCAGGGGGCCAGACAGGTGACCTCCATGTGGCAGTCTGGGCGGCATCACCTGGTGTGGGAGCTCACAGCTCCACAGCCACCCTCTTGgccacagccaatgccactgccaatgccacagcTACCCTCCTGGCCACAGCCAGTGTCACAGTCTGGCAGCAGCTTGGCTGGCAGAAGCTGGTC--------------------------------------------------------------------------- i calJac3.chr5 I 1 C 0 s mm10.chr11 99582541 815 + 122082543 GAATATTATTTAATGCACAGAACATTTTATTAGCAGAC-GATTCAAACATAAGTTAATTTTCATACAACCATTTTGCTTTAGATTATGTGCCTATGCCTGAAGATTACTATCAT----------------------------------CTATAGATGGGCA-GCTTAAAATTAGAA-GATGCACAGAAATCTATTCACTTGTGCAC---AAAACACTTTATTTG-AGAGCATCGGGGTCTCTTCAAGTGGAAAGCTTGATGGAAGACGTGTGGGGACCGAGGACTAGGGAATAAAGTCCACACCTCACTGGAATGATGTACTGCTGCATCCTTTGTGCATCATCTAAGCAAAGAAGGGTCCCTGGA-ACATGCTGATTGAGACGCGTGTTCAGTGGACTAATTCCAGCACGCCTTT-GGGGATCCTGATGAAGAGTTCCACC-TCCAGGAACAGGTTAACAACATGAAGATACTTAGCATCCA--CCACACAGAACACATCCTCAGCAGTCCACACAATTCTTCAGGGCTTTCTGTTGCATTTCTAACTATTCAGGAACCTGGTTCTTAACAGCTGGGCTCAGAGCAGCTGGGCTTAGAGCAGCTGGGCTCACAACAGTGGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGCAGGTGCCCTCCACACGGCAGTCAGGGCGGCACCATCTAACACGGCAGCTCAGGCCTCCACTGCCACCCTCCTG------------------------GCCACTGC--------------------------CAGTTCCACAGCAGCTGGTCTGACAGCAgctgggc--------------------------------------------------------------------------- i mm10.chr11 C 0 I 165 s canFam3.chr9 39422864 936 - 61074082 AAAGATTATTTAACGCATGGAACATTTTACTTACTGATGGATTCATGCATAATGTAATTAATATTTAATCTTTCCAGTTTAGATTTTGT--TTATGCTTTAAGATTATTATCAAAATGCAAATCCAACTAAACTAACTTGAATTCCAACTAAAGATGGATAAGCTTAGAGGTAGAAAAAAGAAAATAACTCAGTTTGCTT-TACACATTTAAACATTTTATTTGAAATTAAT--GGT-ATATTCAAGGAGAAAGCAAATCTAAAAATATGCAGGGATCAAAAGATAGGGAGGAGACGGGAGATGTCACTGAAATAAAGAAATACCCTACCC-TGATGC-CTTCTCTAACAAGGCAGGATATCTAGATACT--CTGATTGATACATGTATTCCCTGTGCTAATT-CAGCACATCCAAGAGGG-GCCTGATTAAGA--TTCATTATTTCTGATTGGCTTAGAAACATCATG---------ATGGGAATAAAATTGAACACTTCTTCAGAGATCAGAGCAGCTGATTTA-GCTTCCCATTTCATTCTTGATTAATCAGCAGCCTTGCTTTTAGCAGGTGGGCCCACAACAGGTGGGCTGGCAGCAGGTGGGCTGGCAGCAGTAGGAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACGCAGCAGGGGGGCAGGCAGGTGTCCTCCACGCGGCAGTCAGGGCGGCACCACCTGACTCGGCAGCTCATAGCTCCACTGCCACCCTCCTGGCCACCACCAATGCCACAGCCAGTCCCACAGC--------------------------TGggctggcagcagctggtctgacagcaagttggctggcagcagctggtctggcagctggttggctggcagcagctcggctggcagcagctggtctggcagctggttggc i canFam3.chr9 C 0 C 0 a score=975747.000000 s hg38.chr17_JH159146v1_alt 179396 243 + 278131 TGGCAGCAGCTAGTTTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGTTGGGTTGAGAGCTG---TGTT-AAGAGAGGTTTCTGAGTTTGGGCTGTACCTTCTATATCTGTCCTTTGATATGTTCCCTAGAGCTGCATATTTACCCAA-------CACCTTTTCTTGATGTCAATTTCAGTGTGAGTCT----CTGGCTAATACCTGAGGTGTTTAT s panTro4.chr17 66298541 243 - 82630442 TGGCAGCAGCTAGTTTCACAGCAGTTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGTTGGGTTGAGAGCTG---TGTT-AAGAGAGGTTTCTGAGTTTGGGCTGTACCTTCTATATCTGTCCTTTGATATGTTCCCTAGAGCTGCATATTTACCCAA-------CACCTTTTCTTGATGTCAATTTCAGTGTGAGTCT----CTGGCTAATACCTGAGGTGTTTAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8510984 243 - 17838096 TGGCAGGAGCTAGTTTCACAGCAGCTTGACTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCGTGGTGTCAGAAGTTGGGTTGAGAGCTG---TGTT-AAGAGAGGTTTCTGAGTTTGGGCTGCACCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CACCTTTTCTTGATGTCAATTTCAGTATGAGTCT----CTGGCTAATACTTGAGGTGTTTAG i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48058876 246 - 81552678 TGGCAGCAGCTAGTCTCACAGCAACTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCGAGAGTTGGGTTGAGAGCTGTGTTGTT-AAGAGAGGTTTCTGAGTTTGGGCTGCACCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CATCTTTTCTTGATGTCAATTGCAGCGTGAGTCT----CTGGCTAATACCCGAGGTGTTTAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53161279 246 + 80904711 TGGCAGCAACTGGTCTCACAGCAGCTTGGCTGGCAGCAACTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGCTGGGTTGAGAGCTGTGTTGTT-AAGAGAGGTTTCTGAGTTTGTGCTGCGCCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CATCTTTTCTTGATGTCAGTTTCAGCATGAGTCT----CTGGCTAATACCCGAGGTGTTTAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52725672 246 + 80997621 TGGCAGCAACTGGTCTCACAGCAGCTTGGCTGGCAGCAACTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGCTGGGTTGAGAGCTGTGTTGTT-AAGAGAGGTTTCTGAGTTTGTGCTGCGCCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CATCTTTTCTTGATGTCAGTTTCAGCATGAGTCT----CTGGCTAATACCCGAGGTGTTTAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47728432 246 + 74645514 tggcagcagctggtctcacagcagcttggctggcagcaactggagcCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGCTGGGTTGAGAGCTGTGTTGTT-AAGAGAGGTTTCTGAGTTTGTGCTGCACCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CATCTTTTCTTGATGTCAATTTCAGCATGAGTCT----CTGGCTAATACCCGAGGTGTTTAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9995218 245 - 75148670 TGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAACTGGAGCCACAGGTCCCACTGGTGGA------------------------------ACAGCTGGCCATGGTGTCAGGAGCTGGGTTGAGAGCTGTGTTGTT-AAGAGAGGTTTCTGAGTTTGTGCTGCACCTTCTATATCTGTCCTTTTATATGTTCCCTAGAGCTGCATATTTACCTAA-------CATCTTTTCTTGATGTCAATTTCAGCATGAGTCT----CTGG-TAATACCCGAGGTGTTTAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112871932 246 + 159171411 TAGCAGCAGCTTGTCTCACAGCAATTTGGCTGGCAGCAGCTGGAGCCACAGGTCTCACTGGTGGA------------------------------ACACCTGGCCATGGTGTCAGGAACTAGGTTGAGAGCTGTGTTGTG-AAGAGAGGTTTCCGAGTTTGGGCTGCACCTTCTATATCTGTCCTTTTATATGTTCCCTAAAGCTGCATATTTACCTAA-------CATCTTTCCTTGATGTCAATTTCAATGCGAGTCT----CTGGCTAATACCTGAAGTGTTTGG i calJac3.chr5 C 0 I 1322 s mm10.chr11 99583521 283 + 122082543 tggCAGCAGCTGGATTGGGAGCAGCTGGGCTGACAGCAGTTAGAACCACATGTGCCGCCAGTGGAGCAAGTGGGAAAGCCACAGAAACTAGTAGCGCAGCAGGCCATGGTGTCTGGAGTCAATTTG---GTTGTTCTGTG-AGGAGAAGTTTCTGAGTTTGGTTTGTGTCTTCCTCACCTGGTCTTTTATATATTCCCTATAGCTGCGTATTCATCTAACATTTAGCATCTTCCCTTGACGCAAGTTGCAAAGTCAGTCTTTGATTGGTCAGTATCTGA-GTAATTAG i mm10.chr11 I 165 C 0 s canFam3.chr9 39423800 286 - 61074082 tggcAGCAGCTGGTCTGACAGCAGCTAGGCTGGCAGCAGCTGGAGCCACAGTTCCCACTGGTGGAGCAGGTGGGAAATCCACAGAAGCTAGTGGAGCAGCAGGCCATG--GTCAGAACTTAGGTTAAGAGCTGGGTTGTTAAAGAGAAGTTTTTGAGTTTTGGCTGCGCCTTCTACATCTGGCCTTTTATATATTTCCTAGAGCTGCCTATTTCCCTAACATTCAGCATTGTTCCTTGATACCATTTGCAAAGTAAGTCTCTGATTGGCTGATACTTGAGTTGTTTAG i canFam3.chr9 C 0 C 0 a score=2826949.000000 s hg38.chr17_JH159146v1_alt 179639 783 + 278131 AAAGTTATAAATAG--------CATTTCAATAGC---CTTTTTCCATTGTACAATTAAGTCTCATTATGTTTCTTCTTTGCCCTCTGGGCGAAGTGAAGGCTCATCATGGAAGCCAAGCACCGAAGTGCCTCTTTATGCAAGTCACATGACAGACTAGCCTTGAGCCAAGTGTCGCCCTGGCACGTTTTGTCATAGTTGTCCTTTGATAACCTTTAGGCAGAA-TTTATCTTAACTGATCATTT-T-TCCTTAAATGGTCACTTAACTA-TGATCATGATTTTATAAACAA--TTTGTCCAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTA-CAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAATAGTGAATGTACAAATTGCTAACTAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACTC--TATTAAATTAAACATATGTGCTagta-------------------atgagtacacat-------------------------------------tgtaacaagtcaaagagt-acagaggtatataaagaaaaattagtgt--cttttccct----tccTGGA-------AGATGCACACATCTCTTCCAAAACTAATGctctagaggtaatcaatattaagaatttggtgcacattctttgacacctttatccttgcttctgcaaata------------------taaaccagcatatatacatataTATCTTCTATTTCAGAAAAGTTTGGGTCTCCTACACATGTTTATAGTTACAAAtttttaattgtggt s panTro4.chr17 66298784 783 - 82630442 AAAGTTATAAATAG--------CATTTCAATAGC---CTTTTTCCATTGTACAATTAAGTCTCATTATGTTTCTTCTTTGCCCTCTGGGCGAAGTGAAGGCTCGTCATGGAAGCCAAGTACCGAAGTGCCTCTTTATGCAAGTCACATGACAGACTAGCCTTGAGCCAAGTGTCGCCCTGACACGTTTTGTCATAGTTGTCCTTTGATAACCTTTAGGCAGAA-TTTATCTTAACTGATCATTT-T-TCCTTAAATGGTCACTTAACCA-TGATCATGATTTTATAAACAA--TTTGTCCAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTA-CAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTACATATTGCTAACTAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACTC--TATTAAATTAAACATATGTGCTagta-------------------atgagtacacat-------------------------------------tgtaacaagtcaaagagt-acagaggtatataaagaaaaattagtat--cttttccct----tccTGGA-------AGATGCACACATCTCTTCCAAAACTAATGctctagaggtaatcaatattaagaatttggtgcacattctttgacacctttatccttgcttctgcaaata------------------taaaccagcatatatacatataTATCTTCTATTTCAGAAAAGTTTGGGTCTCCTACACATGTTTATAGTTACAAAtttttaattgtggt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8511227 786 - 17838096 AAAGTTATAAATAG--------CATTTCAATAGCCTGCTTTTTCCATTGTTCAATTAAGTCTCATTATGTTTCTTCTTTGCCCTCTGGACTAAGTGAAGTCTCACCACGGAAGCCAAGCACAGAAGTGCCTCTTTATGCAAGTCACATGACAGACTAGCCTTGAGCCAAGTGTTGCCCTGGCACGTTTTATCATACTTGTCTTTTGATAACCTTTAGGCAGAA-TTTATCTTAACTGACCATTT-T-TCCTTAAATGGTCACTTAACCA-TGATCATGTTTTTACAAACAA--TTTGTCCAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTA-CAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTACATATTGCTAACTAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACTC--TATTAAATTAAACATATGTGCTAGTA-------------------ATGAATACACAT-------------------------------------TGTGATAAGTCAAAGAGT-ACAGAGGTATATAAAGAAAAATTAGTAT--CTTTTCCCT----TCCCAGA-------AGATGCACACATCTCTTTCAAAACTAATGCTCTAGAGGTAATCAATATTAAGAATTTGGTGCACATTCTTTGACACCTTTATCCTTGCTTCTGCAAATA------------------TAAACCAGCATATATACATATATATCTTCTATTTCAGAAAAATTTGGGTCTCCTACACATGTTTATAGTTACAAAtttttaattgtggt i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48059122 783 - 81552678 AAAGTTATAAATAG--------CATTTCGATAGCCTGCTTTTTCCATTGTTCAATTAAGTCTCATTGTGTTTCTTCTTTGCCCTCTGGACTAAGTGAAGGCTCATCATGGAAGCCAAGCACAGAAGTGCCTCTTTATGCAAGTCACATGACAGACTAGCCTTGAGCCAAGTGTTGCCCTGGCATGCTTTGTCATACTTGTCCTTTGATAACCTTTAGGCAGAA-TTTATCTTAACTGACCATTT-T-TCCTTAAATGGTCACTTAACCA-TGATCATGGTTTTATAAACAA--TTTGTCCAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTA-CAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTTTGCAAGTTATAGGATCCTTAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATATACATATTGCTAACTAAAATATTTAATGACTTTTGCTTGTAGATTGTTTTCTGACTC--TATTAAATCAAACATGTGTGCTagta-------------------ataaatacacat-------------------------------------tgtaacaagtcaaagagt-acagaggcatataaagaaaaattaatat--cctttctct----tccTGGA-------AGATGCACACATCTCTTCCAAAACTAGTGCTCTAGAGGTAATCAATATTAAGAATTTGGTGCACATTCTTTGACACATTTATCCCTGCTTCTGCAAGTA------------------AAAACCAGCATATATACATATATATCGTCTATTTCAGAAAAG-TTGGATCTCCTACACA--TTTATACTTACAAAtttttaattgtggt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53161525 782 + 80904711 AAAGTTATAAATAG--------CATTTCAATAGCCTGCTTTTTCCATTGTTCAATTGAGTCTCATTATGTTTCTTCTTTGCCCTCCGGACTAAGTGAAGGCTCATCATGGAAGCCAAGCACAAAAGTGCCTCTTGATGCAAGTCACATGACAGACTGGCC-TGAGCCAAGTGTTGCCCTGGCATGCTTTGTCATACTTGTCCTTTGATAGCCTTTAGGCATAA-TTTATCTTAACTGACCATTT-T-TCCTTAAATGATCACTTAACCA-TGATCATGGTTTTATAAACAA---TTGTCTAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTG-TAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTGCATGTTGATAACCAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACAC--TATTAAATTAAACATATGTGCTagta-------------------atgaatacacat-------------------------------------tgtaacaagtcaaagagt-acagaggcatataaagaaaaactaatat--cctgtccct----tccctGA-------AGATGCACACATCTCTACCAAAATTAATGCTCTAGAGATAATCAATATTAAGAATTTGGTGCACATTCTTTGATACCTTTATCCCTGCTTCTGCAAATA------------------TAAACCAGCATATATACATATATATCTTCTATTTCAGTAAAGTTTGGGTCTCCTACACA--TTTGTACTTACAAAtttttaattgtggt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52725918 782 + 80997621 AAAGTTATAAATAG--------CATTTCAATAGCCTGCTTTTTCCATTGTTCAATTGAGTCTCATTATGTTTCTTCTTTGCCCTCCGGACTAAGTGAAGGCTCATCATGGAAGCCAAGCACAAAAGTGCCTCTTGATGCAAGTCACATGACAGACTGGCC-TGAGCCAAGTGTTGCCCTGGCATGCTTTGTCATACTTGTCCTTTGATAGCCTTTAGGCATAA-TTTATCTTAACTGACCATTT-T-TCCTTAAATGATCACTTAACCA-TGATCATGGTTTTATAAACAA---TTGTCTAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTG-TAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTGCATGTTGATAACCAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACAC--TATTAAATTAAACATATGTGCTagta-------------------atgaatacacat-------------------------------------tgtaacaagtcaaagagt-acagaggcatataaagaaaaactaatat--cctgtccct----tccctGA-------AGATGCACACATCTCTACCAAAATTAATGctctagaggtaatcaatattaagaatttggtgcacattctttgatacctttatccctgcttctgcaaata------------------taaaccagcatatatacatataTATCTTCTATTTCAGTAAAGTTTGGGTCTCCTACACA--TTTGTACTTACAAAtttttaattgtggt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47728678 783 + 74645514 AAAGTTATAAATAG--------CATTTCAATAGCCTGCTTTTTCCATTGTCCAGTTGAGTCTCATTATGTTTCTTCTTTGCCCTCCGGACTAAGTGAAGGCTCATCATGGAAGCCAAGCACAAAAGTGCCTCTTGATGCAAGTCACATGACAGACTAGCCTTGAGCCAAGTGTTGCCCTGGCATGCTTTGTCATACTTGTCCTTTGATAACCTTTAGGCATAA-TTTATCTTAAGTGACCATTT-T-TCCTTAAATGATCACTTAACCA-TGATCATGGTTTTATAAACAA---TTGTCTAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTG-TAACCTGATGTATCAGCTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTACATGTTGATAACCAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACAC--TATTAAATTAAACATATGTGCTAGTA-------------------ATGAATACACAT-------------------------------------TGTAACAAGTCAAAGAGT-ACAGAGgcatataaagaaaaactaatat--ccTTTCCCT----TCCCTGA-------AGATGcacacatctctaccaaaattaatGCTCTAGAGGTAATCAATAGTAAGAATTTGGTGCACATTCTTTGATACCTTTATCCCTGCTTCTGCAAATA------------------TAAAccagcatatatacatatatatcttctaTTTCAGTAAAGTTTGGGTCTCCTACATG--TTTATACTTacaaatttttaattgtggt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9995463 783 - 75148670 AAAGTTATAAATAG--------CATTTCAATAGCCTGCTTTTTCCATTGTTCAATTGAGTCTCATTATGTTTCTTCGTTGCCCTCCGGACTAAGTGAAGGCTCATCATGGAAGCCAAGCACAAAAGTGCCTCTTGATGCAAGTCACATGACAGACTAGCCTTGAGTCAAGTGTTGCCCTGGCATGCTTTGTCATGCTTGTCCTTTGATAACCTTTAGGCATAA-TTTATCTTAACTGACCATTT-T-TCCTTAAATGGTCACTTAACCA-CGATCATGGTTTTATAAACAA---TTGTCTAGACTTGGAAAGACTAACATTAGTGTCATCAAAACATGAACTG-TAACCTGATGTATCAACTTTCAAACCAAGTATGCCTTTCTATGATCAATTTGTGCAAGTTATAGGATCCTCAGAGCTCTATCTAATATTCTTGCCTTCAGTAGTAGTGAATGTACATGTTGATAACCAAAATCTTTAATGACTTTTGCTTGTAGATTGTTTTCTGACAC--TATTAAATTAAACATATGTGCTagta-------------------atgaatacacat-------------------------------------tgtaacaagtcaaagagt-acagaggcatataaagaaaaactaatat--cctttccct----tccctGA-------AGATGCACACATCTCTACCAAAATTAATGCTCTAGAGGTAATCAATATTAAGAATTTGGTACACATTCTTTGATACCTTTATCCCTGCTTCTGCAAATA------------------TAAACCAGCATATATACATATGTATCTTCTATTTCAGTAAAGTTTGGGTCTCCTACACA--TTTATACGTACACAtttttaattgtggt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112873500 789 + 159171411 AAAGTTATAAATAGCACTTCAACATTTCAATTGCCTGCTTTGTCCATTGCTCAATTAAGTCTCATTATGTTTCTTCTTTGCCCTCT--CCTTAGTGAAGGCTCATCATGGAAGCCAATCACAGAAGTGTCTCTCTACACAAGTCACATGAGAGACTAGCTTTGAACCAAGTGTTGCCCTGGCATGCTTTGTCATACTTGTCCTTTGACAGCCTTTAGGCAATA-TTTATCTTAACTTACCATTT-T-TCCCTAAGTGGTCACTTAACCA-TGATCATGGTTTTCTAAACAA--TTTGTTTAGATGTGGAAAGACTAATAGTAGTGTCATCAAAACATGAATTA-TAACCTGATGTATCAACTTTCAAACGAAGTATACCTTTCTATGATCAATTTGTGGAAGTTATAGAATCCTCAGAGCTCTGTCTAATATTCTTGCCTTCAGTAGTAGTCAATGTACCTATGGCTAACTAAAACCTTTAATGACTTTTGCTTATAGATTGTTTTCTGACTT--TTTAAACTTAAACATATGTGCTAGTA-------------------ATGGATACACAC-------------------------------------TGTAACAAGTCAAAGAGG-ACAGAGGCATATAAAGAAAAATTAACAT--CCTTTCCCT----TCTCTGA-------AGATGAACACATCTCTTCCAAAACTAATGTTCTGGAGGTAATCAACATTAAGAATTTG---CATATTCTTTAATACCTTTCTCTCTGCTTCTGCAAATA------------------TAAACCAGCATATATACATATATATCTTCTATTTCAGTAAAGTTTGAGTCTCCTACACATGGTTGTACTTACAGAAttttaattgtggt i calJac3.chr5 I 1322 C 0 s mm10.chr11 99583804 818 + 122082543 AAACGTATAAACAG--------TGCTTCCATCATCTGCTATAGTCAGTGATCAATTAAGTGGCCCTGTGCTTCCTCTTTCCCCTCTGGTCTAAGGGAAGGTATATTA------CCTAACACAGCAG---CCCTCTATAAAAGTCAAATGACAAAC----------------ACTACCATGGCTTGCTTTGCCTCAGCTGACCTTTGATAACC-TTAGGCACAAGTTTATCCAAACTGAAAATTTAT-TTCCTAAGCAGCCAC-----------TCATGATTTCATAAACAG--TTTACTCAGACTCGGTAAGACTAATATTGATGTCATAAAAACATGAACTATTAAACTG----ATCAGCATCCAAACAAAGTCTGCCTTCCTGGGATCAGTCTGCGCAGGTTAGAAGATCCTTAAGGCTC-----AATGCTACTTCCTTT--TGGTCATCAATGCACACTTTACAAACCGAAGCTTTTAACGACTTTGCCTTCTACATTGTTTTCTGTCTTCatatatacttacatatatatatatatatatatatatatatatatatatgtatatatatatatGTGTGTGTGTGTAAAATTATATCAATGGATATGTTTAACAAGGCAAAGAGTGATAGAGTCATAT-AAGGAAAACTGATATTCCCTTTCCCTAGTGTCACAGACATACACATATGCAAATATCTTTTTCAAAACTAGTGTAACAAAGATAACCAATATT-GGCAGTTGGTGTTTATTCTTTA-----TTCATTCCTGCTCCTTGAAGTAATAAtgtgtgtgtgtttgtatgtgtgcgtgcacatgtgtgtgtCTTCAATTTCAATAAAGTTTGGCT---TTATGCA--TGTGTAAAT-TATAATTTTAGTTGTGG- i mm10.chr11 C 0 C 0 s canFam3.chr9 39424086 745 - 61074082 AAAGTTATAAATAG--------CATTTCAATAGACTGCTTGGT-CATTATTCAATTAGATCTCATTATGTTTTGTCTTTGCTCTCTGGA------------TCATTATGGAAGCCAATCAGAGCAACACCTCTTTATGCAAATCACATGACAGACTAGAGTTGGGCTAA------CCCTGGTTTGCTTTATCATACCTATCCTTTGTTAACCTTGAGACCGAG-TTTATCTAAACTGAACATTT-TCTTCCTAAGTGATCATTAAATTAGGGATCAGGACTTCATAAAAAGAATTTGTTCAGATTTGGAATGGCTGATATTAGGGTCATCAAAACATGAACTA-T--CCAAATTAATCAACATCCAAAAGAACTATGCCTTCCTAGGATCTGTTTGTGCAAGTTATAGGACACTAAGAGCTCTAACCAGTATTTTTGCCTTC---AACCATCAGTGTACATATTCCCAGTTGAAACCTTTAATGACTTTTGCTAGTAGATTGTTTTCTGACTC--TACTAAATTAAAAATAAAATTCAGTG-------------------ATGAATACGTGT-------------------------------------TTTAACAAGTCAAACAGT-ACACAGGTGCATAAA--AAAATTATTAT--TTTTCCTCTCTT-TCCCAAA-------A----CATCCATCTGATCCAAAACTAGTACTTCAGAAATAATAAATATTCAG--TTTGGTGCATATTCTTTGACAC--TTCTCCCTGCTTTTGCAGACA------------------TAAACC-------ATAAATATA-----TTTAGTTAAGTAAATAATGGGGTCTATATGTA--CTTATTTTTTAAAAATTGTACTTATAGT i canFam3.chr9 C 0 I 5557 a score=154995.000000 s hg38.chr17_JH159146v1_alt 180422 56 + 278131 aaaatatacataccataaaatttatg--aaccatttacattaaccatcttAACCATTT s panTro4.chr17 66299567 56 - 82630442 aaaatatacataccataaaatttatg--aaccatttacattaaccatcttAACCATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8512013 56 - 17838096 aaaatatacataccataaaatttatg--aaccatttacattaaccatcttAACCATTT i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48059905 56 - 81552678 aaaatacacataccataatatttatg--aaccatttacgttaaccatcttaaccattt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53162307 51 + 80904711 aaaatatacataccagaaaattcatg--aatcat-----ttaaccatcttaactattt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52726700 51 + 80997621 aaaatatacataccagaaaattcatg--aatcat-----ttaaccatcttaactattt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47729461 56 + 74645514 aaaatatacataccataaaattcatg--aACCGTTTAAGTtaaccatcttaaccattt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9996246 56 - 75148670 aaaatatacataccataaaattcatg--aatcatttaagttaaccatcttaactattt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112874289 58 + 159171411 aaaatatacataccgtaaaatttaTGCTAACAATTTATGTTAACCATCTTAACCATTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99584622 48 + 122082543 ---AAATTCATGTC--AATATTTTTA--A--CAT-TATGTCAATCATTTTAACTAATT i mm10.chr11 C 0 I 5716 e canFam3.chr9 39424831 5557 - 61074082 I a score=1287113.000000 s hg38.chr17_JH159146v1_alt 180478 444 + 278131 Gtaaatagtcttgtcacccttgttgaaaatcatttgaccacattcacattcagaagaaatgaaattagaccattgtctcacattatatacaaaaaccaacttagaatggattaaaagactgaaatgtaagaaagactcaaaatgataaaactataagaagaaaacagagg--aaactccatgacttttgcctggccaatattgtgatattgtgaacatgaatccaaaagcatcagcaaaaatagacaagtgggattacatcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagacgcaaaccgctgaatgggagaaaatatttataaaccacatatctgataaagggttaatatccaaagtatagaggaaactcaaacaactcaatacctgtagtaagaaaacaaataacgtaattgaaaaatgggcaaa s panTro4.chr17 66299623 443 - 82630442 Gtaaatagtcttgtcacccttgttgaaaatcatttgaccacattcacattcagaag-aatgaaattagaccattatctcacattatatacaaaaaccgacttagaatggattaaaagactgaaatgtaagaaagactcaaaatgataaaactattagaagaaaacagagg--aaactccgtgacttttgcctggccaatattgtgatattgtgaacatgaatccaaaagcatcagcaaaaatagacaagtgggattacatcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagatgcaaaccactgaatgggagaaaatatttataaaccacatatctgataaagggttaatatccaaagtatagaggaaactcaaacaactcaatacctgtagtaagaaaacaaataacgtaattgaaaaatgggcaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8512069 443 - 17838096 Gtaaatagtcttgtcatccttgttgaaaatcatttgaccacattcacatgcagaag-aatgaaattagaccattatctcatattatatacaaaaaccaacttagaatggattaaaagactgaaatgtaagaaagactcaaaatgataaaagtattagaagaaaacagagg--aaactccatgacttttgcctggccaatattgtgatattgtgaacacgaatccaaaagcatcagcaaaaatagacaagtgggattacatcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagagacaaaccattgaatgggagaaaatatttataaaccacatatctgataaggagttaatatccaaaatatagaggaaactcaaacaactcaatacctgtagtaagaaaacaaataatgtaattgaaaaatgggcaaa i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48059961 443 - 81552678 gtaaatagtcttgtcacccttgttgaaaatcgtttgaccacattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaagaaccaacttagaatggattaaaaggctgaaatgtaagaaagactcaaaatgataaaactattagaagaaaacagagg--aaactccatgacttttgcctggccaatattgcgatattgtgaacatgaacccaaaagcatcagcaaaaatagacaagtgggattacacctaactgaaaagcttctgcacagccaataaaacactaaactgagtgaagagacaaaccacagaatgggagaaaatatttacaaaccacatatctgataaggggttaatacccaaaatatagaagaaactcaaacaactcaatacctgtagtaagaaaacaaataacgtaattgaaaagtggggaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53162358 435 + 80904711 gtaaatAGTCTTGTCACCCTTGTTGAAAATCTTTTGACCACattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaaaaaccaacttacaatggattaaaagactgaaatgtaagaaagactcaaaatg--aaaactattagaagaaaatagagg-caaactccacgacttttgcctggccaat-----gatattgtgaacatgaactcaaaagcatcagcaaaaatagacaaatgggattacatcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagagacaaaccacag-atgggagaaaatatttacaaaccacatatctgataagggg-taatatccaaaatatagaagaaactcaaacaactcaatacctgtagtaagaaaacaaataacataattgaaaaatgggcaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52726751 435 + 80997621 gtaaatagtcttgtcacccttgttgaaaatcttttgaccacattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaaaaaccaacttacaatggattaaaagactgaaatgtaagaaagactcaaaatg--aaaactattagaagaaaatagagg-caaactccacgacttttgcctggccaat-----gatattgtgaacatgaactcaaaagcatcagcaaaaatagacaaatgggattacatcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagagacaaaccacag-atgggagaaaatatttacaaaccacatatctgataagggg-taatatccaaaatatagaagaaactcaaacaactcaatacctgtagtaagaaaacaaataacataattgaaaaatgggcaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47729517 437 + 74645514 gtaAATAGTCTTgtcacccttgttgaaaatcgtTTGACCacattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaaaaaccaacttaCAATGGattaaaagactgaaatgtaagaaagactcaaaatg--aaaactattagaagaaaatagagg-CAAACTCCATGACTTTTGCCTGGCCAAT-----GATATTGTGAACATGAACCCAAAAGCAttagcaaaaatagacaaatgggattacatcaaactaaaaagcttctacacagccaATAAAACACTAAACTGAGAGAAGAGACAAaccacagaacgggagaaaatatttacaaactacatATCTGATagggggttaatatccaaaatatagaagaaactcaaacaactcaatacccatagtaagaaaacaaataacataattgaaaaatgggcaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9996302 435 - 75148670 gtaaatAGTCTTGTCACCCTTGTTGAAAATTGTTTGTCCacattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaaaaaccaagttacaatggattaaaagactgaaatgtaagaaagactcaaaatg--aaaactattagaagaaaatagagg-caaactccacgacttttgcctggccaat-----gatattgtgaacatgaactcaaaagcatcagcaaaagtagaacaatgggattacgtcaaactaaaaagcttctgcacagccaataaaacactaaactgagtgaagagacaaaccacag-atgggagaaaatatttacaaaccacatatctgataagggg-taatatccaaaatatagaagaaactcaaacaactcaatacctgtagtaagaaaacaaataacataattgaaaaatgggcaaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112874347 434 + 159171411 GCAaatagtcttgtcatccttgttgaaaatcatttgaccaCattcacatgcagaag-aatgaaattagaccattatctcacatcatatacaaaaaccaactcagaatggatt-aaagactgaaatgtaagaaagactcaaaataataaaaatattagaag----tagaggaaaagctccatgacttttgtctggccaat-----gttatggtgaacatgaa-ccgaaagcatcagcaaaaatagacaaatgggattacgtcgaacaaaaaagcttctgcatagctaataaaatactacactgagcgaggagacaacccacagaatgggagaaaatattaacaaaccacatatctgatgaggggttaatatccaaaatatagaagaaactcaaacagctcaattcctgtactaagaaaacaaacagtctaatttaaaaatgggcaaa i calJac3.chr5 C 0 I 4159 e canFam3.chr9 39424831 5557 - 61074082 I e mm10.chr11 99584670 5716 + 122082543 I a score=1438919.000000 s hg38.chr17_JH159146v1_alt 180922 623 + 278131 aaatctaaatagacatttctcaaaaaaa-----atctacaaattgccaacaggtatatg-aaaaattttcaaaatcaccaatcatcggataatgcaaattgaaaccacaatgagatatcgtctcacacatattagatagttattatcaaaaagacaaaagatagcaagtgttggagaggaagtggagaaaagagaactctggcacactgttggtggaaatgtaaattagtacagccattatggaaaacaatatgaaggttcatcagaaaattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtatatacccgaaggaaagtaaatcagtattttgaagagacatctgcattcccatgttcattgcagcattactcacaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgagtggataaagaaaatgtgat--acacacacacatacacacacacacactcacacactggaatattattggtcataaaagaaggaaatcctgctatttggggca--acagattaaacttgagaacattatactaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttacaagtggaa s panTro4.chr17 66300066 623 - 82630442 aaatctaaatagacatttctcaaaaaaa-----atctacaaattgccaacaggtatatg-aaaaattttcaaaatcaccaatcatcggataatgcaaatggaaaccacaatgagatatcgtctcacacatattaggtagttattatcaaaaaaacaaaagatagcaagtgttggagaggaagtggagaaaagagaactctggcacactgttggtggaaatgtaaattagtacagccattatggaaaacaatatgaaggttcatcagaaaattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtatatacccgaaggaaagtaaatcagtattttgaagagacatctgcattcccatgttcattgcagcattactcacaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgagtggataaagaaaatgtgat----acacacacatacacacacacacactcacacactggaatattattggtcataaaagaaggaaatcctgctatttggggcaacacagattaaacttgagaacattatactaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttacaagtggaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8512512 625 - 17838096 aaatctaaatagacttttctcaaaaaaa-----atctacaaatggacaacaggtatatg-aaaaattttcaaaatcaccaatcatcagataatgcaaattgaaaccacaatgagatatcgtctcacacatattaggtagttattatcaaaaagacaaaagatagcaagtgttggagaggaagtggagaaaagagaactctggcacactgttggtggaaatgtaaattagtacagccattatggaaaacaatatgaagattcctcagaacattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtacacacccgaaggaaagtaaatcagtattttgaagagacatctgcattcccatgttcattgcagcattactcccaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgaatggataaagaaaatgcgat--acatgcacacatacacacacacacactcacacactggaatattattggtcataaaagaaggaaatcctgctatttggggcaacacagatgaaatttgagaacattatactaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttataagtggaa i ponAbe2.chr17_random C 0 C 0 s nomLeu3.chr19 48060404 632 - 81552678 gaatctaaatagaca-ttctcaaaaaaaaaaagatctacaaatggcaaacaggtatatgaaaaaattttcaaaatcaccaatcatcggataatgcaaattgaaaccgcaatgagatatcatctcacatacgtcagatggttattatcaaaaagacaaaagatagcaagtgttggggaggaagtggagaaaagagaactctggcacactgttagtggaaatgcaaattagtacagccattatggaaaacaatatgaaggttcctcaaaaaattaaaaacagaactgtcatataatcaagcaatcccacttctgtgtatatgcccgaaggaaagtcagtcagtattttgaagagacatctgcattcccatgttcattgcagcattactcccaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgagtgggtaaagaaaatgtgacacacacacacacacacacacacacatactcacacactggagtattattagtcataaaagaaggaaatcctgctatttgggtcaacacagatgaaacttgagaacattatactaagttaaataagtcagacaaagaaaaagactaatattgcactttctgacttacaagtggaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53162793 609 + 80904711 gaatctaaatagacgtttctcaaaaaaa----gatctacaaatggccaacaggtatatgaaaaagttttcaaaatcaccaatcgtcgaataatgcaaattgaagccacaatgaggtatcatctcacatatgttagatggttattatcaaaaagacaaaagatagcaagtgttggagaggaagtgtagaaaacagaactctggcacactgttggtggaaatgtaaattagtacagtctttatggaaaacaatat-aaggttcctgaaaacattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtatatacccgaaggaaactaaatcagtattttgaagagacatctgcattcccgtgttcattgcagcattactcccaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgagtggataaataaaatgtgac------------------acacacacactcacacactggaatattcttagtcataaaagaaggaaatcctgctatttggggcaacacagatgaaacttgagaacattat-ctaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttacaagtggaa i rheMac3.chr16 C 0 I 3695 s macFas5.chr16 52727186 609 + 80997621 gaatctaaatagacgtttctcaaaaaaa----gatctacaaatggccaacaggtatatgaaaaagttttcaaaatcaccaatcgtcgaataatgcaaattgaagccacaatgaggtatcatctcacatatgttagatggttattatcaaaaagacaaaagatagcaagtgttggagaggaagtgtagaaaacagaactctggcacactgttggtggaaatgtaaattagtacagtctttatggaaaacaatat-aaggttcctgaaaacattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtatatacccgaaggaaactaaatcagtattttgaagagacatctgcattcccgtgttcattgcagcattactcccaatagccaagatatggaagcaacctaagtgtccatgtccatcattaaatgagtggataaataaaatgtgac------------------acacacacactcacacactggaatattcttagtcataaaagaaggaaatcctgctatttggggcaacacagatgaaacttgagaacattat-ctaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttacaagtggaa i macFas5.chr16 C 0 I 3673 s papAnu2.chr16 47729954 609 + 74645514 gaatctaaatagacatttctcaaaaaga----gatctacaaatggccaacaggtatatgaaaaagttttcaaaatcacCAATCATCGAataatgcaaattgaaaccacaatgagatatcatctcacatatGTTagatggttattatcaaaaagacaaaagatagcaAGTGTTGGAGAGGAAGTGTAGAAAACAGAACTCtggcacactgttggtggaaatgtaaattagtacagtctttatggaaaacaatat-aaggttcctgaaaacattaaaaatagaactgtcatATAATCaagcaatcccacttctgtgtatatacccgaaggaaactaaatcagtattttgaagagacatctgcattcctgtgttcattgcagcattactcccaatagccaagatatggaagcaacctaagtgtccatgtCCATCAttaaatgagtggataaataaaatgtgac------------------acacacacactcacacactggAATTTTCTTAGtcataaaagaaggaaatcctgctatTTGGGGCAACACAGATGAAACTTGAGAACATtat-ctaagtgaaataagtcagacaaagaaaaagactAATATTGCActttctcacttacaagtggaa i papAnu2.chr16 C 0 I 3979 s chlSab2.chr16 9996737 609 - 75148670 gaatctacatagacacttctcaaaaaga----gatctacaaatggccaacaggtatatgaaaaagttttcaaaatcactgatcatcaaataatgcaaattgaaaccacaatgagatatcatctcacatatgttatatggttattatcaaaaagacaaaagatagcaagtgttggagaggaagtgtagaaaacagaactctggcacactgttggtggaaatgtaaattagtacagtctttatggaaaacaatatgaaggttcttgaaaacattaaaaatagaactgtcatataatcaagcaatcccacttctgtgtatatacccgaaggaaactaaatcagtattttaaagagacatctgcattcccatgttcattgcagcattactcccaatatccaagatatggaagcaacctaagtgtccatgtccatcattaaaagagtggataaataaaatgtgac------------------acacacacactcacacactggaatattcttagtcataaaagaaggaaatcctgctatt--gggcaacgcagatgaaacttgagaacattatactaagtgaaataagtcagacaaagaaaaagactaatattgcactttctcacttacaagtggaa i chlSab2.chr16 C 0 I 1205 e canFam3.chr9 39424831 5557 - 61074082 I e mm10.chr11 99584670 5716 + 122082543 I e calJac3.chr5 112874781 4159 + 159171411 I a score=328929.000000 s hg38.chr17_JH159146v1_alt 181545 639 + 278131 cttaatgtaaatgacaagttattgggtgcagcacaccaacatggcacatgtatacatatgcaacaaacctgcaagttgtgcacatgtaccctagaacttaaagtataataaaaacaaaaaaaCCTC-AAAAAAAAGaaaaagttgaattcatggaagtagaaagtagaatggtggttacc-gggggtagggtggtggtggagtgtgttgggaagatgttggtcaaaggattacaaaatttcagttagataagaggaataaattcaagagatctattgtacaacatagagactatagttcataacaatatgttacagtcctgaaaattgctaagagagtagattttgtgttttcactacaaaaaaacttatgtgaggtaatgcatatgttaattagtttgatttagccattgtacgaagtatacatattccaaaaaaatgtgttgtacacaataaatacatataatttttgtcaattcaaataaaTAAATAAATGAACtcatttaaccatatgtgtatttgagggtttatttctaggctctctgttcttttccattgctttatatatctgtctttatatcagtatcacactgttatgattactgtagctttacagtaaattttgaaacaggaaaatgtgaga s panTro4.chr17 66300689 639 - 82630442 cttaatgtaaatgacaagttattgggtgcagcacaccaacatggcacgtgtatacatatgcaacaaacctgcacattgtgcacatgtaccctagaacttaaagtataataaaaacaaaaaaaACTCAAAAAAAAAGaaaaagttgaactcatggaagtagaaagtagaatggtggttaccagggggtagggtggtggtggagtgtgttgggaagatgttggtcaaaggattacaaaatttcagttagataagaggaataaattcaagagatctattgtacaacgtagagactatagttcataacaatatgttacagtcctgaaaattgctaagagagtagattttgtgttttcactac-aaaaaacttatgtgaggtaatgcatatgttaattagtttga-ttagccattgtacgaagtatacatattccaaaaaaatgtgttgtacacaataaatacatataatttttgtcaattcaaataaaTAAATAAATGaactcatttaaccatatgtgtatttgagggtttatttctaggctctctgttcttttccattgctttatatatctgtctttatatcagtatcacactgttatgattactgtagctttacagtaaattttgaaataggaaaatgtgaga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17_random 8513137 632 - 17838096 cttaatgtaaatgattagttattgggtacagcacaccaacatggcacatgtatacatatgtaacaaacccgcacgttgtgcacatgtaccctagaacttaaagtataataaaaacaaaaaaaCCTC-AAAAAAAAGaaaaagttgaactcatagaagtagaaagtagaatggtggttaccagggggtagggtggtggtggagtgtgttgggaagatgttggtcaaaggattacaaaatttcagttagataagaggaataaattcaagagatctattgtacaacatagagactatagttcataacaatatgttacagtcctgaaaattgctaagaaagtagattttgtgttttcgctacaaaaaaacttatgtgaggtaatgcatatgttaattagtttga--------ttgtacaaagtatacatattccaaaacaatgtgttgtacacaataaatacatataatttttgtcaattcaaataaaTAAATAAATGAACtcatttaaccatatatgtatttgagggtttatttctaggctctctgttcttttccattgctttatatatctgtctttatgtcagtatcacactgttatgattactgtacctttgcagtaaattttgaaataggaaaatgtgaga i ponAbe2.chr17_random C 0 n 0 s nomLeu3.chr19 48061036 635 - 81552678 cctaatataaatgatgagttaatgggtgcagcacaccaacatggcacatgtccacatatgtatcaaacctgcacattgtgcacatgtaccctagaacttaaagtataataaaaacaaaaaaaCCTC------AAAaaaaaagttgaactcatagaagtagaaagtagaatggtggttaccaggggatagggtggtggtggagtgtgttgggaagatgttggtcaaaggattacaaaatttcagttagacaagaggaataaattcaagagatctattgtacaacatagagactatagttcataacaatatgttacagtcctgaaagttgctaagagagtagattttgtgttttcactacaaaaaaaattatgggcggtaatgcatatgttaattagtttgatttagccattgtacaaagtatacatattctaaaacaatgtgttgtacacaataagtacatataatttttgtcaattcaaataaaTAAATAAATGAACtcatttaatcatatatgtatttgagggtttatttctaggctctctgtttttttccattgctttatatatctgtctttatgtcagtaccacactgttatgattactgtagctttgcagtaaattttgaaataggaaaatgtgaga i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 39424831 5557 - 61074082 I e mm10.chr11 99584670 5716 + 122082543 I e calJac3.chr5 112874781 4159 + 159171411 I e chlSab2.chr16 9997346 1205 - 75148670 I e papAnu2.chr16 47730563 3979 + 74645514 I e macFas5.chr16 52727795 3673 + 80997621 I e rheMac3.chr16 53163402 3695 + 80904711 I a score=285205.000000 s hg38.chr17_JH159146v1_alt 182184 540 + 278131 ccaactttgttcttttttaagattgttttggctatataggaccccttctaatttcatatgtattttaggatggatttttttaaaatttctgcaaaaacatcattgggatttttatagggattgcgttaaatctgtagattctctgggtagtattgacatcttaacaatattaaatcctataatccatgatctcaggatgtcttttcatttatttgtgtcttctttaatttctttcagtaacattttgtagtttctggtgtacgagtctttcccctccaaggctaagtttgttcctaagtattttattcttta------ttttattattattattattatttgaaatggagtctcactctgtcacccaggctggagtgaagtggcacaatcttggctcactgtaacctccacctcctgggttcaagcaattctcatgcctcagcctccccagtagctgggaccacaggcatccacgaacatgcctggctaatttttgtatttttagtagagacagggtttcactatattggccaggctggacttgag s panTro4.chr17 66301328 539 - 82630442 ccaactttgttcttttttaagattgttttggctatataggaccccttctaatttcat-tgtattttaggatggatttttttaaaatttctgcaaaaacatcattgggatttttatagggattgcgttaaatctgtagattctctgggtagtattgacatcttaacaatattaaatcctacaatccatgatctcaggatgtcttttcatttatttgtatcttctttaatttctttcagtaacattttgtagtttctggtgtacaagtctttcccctccaaggctaagtttgttcctaagtattttattcttta------ttttattattattactattatttgaaatggagtctcactctgtcacccaggctggagtgaagtggcacaatcttggctcactgtaacctccacctcctgggttcaagcaattctcatgcctcagcctccccagtagctgggaccacaggcatccacgaacatgcctggctaatttttgtatttttagtagagacagggtttcactatattggccaggctggacttgag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24835283 546 - 73212453 ccaactttgttcttttttaagattgttttggctatataggaccccttctgatttcatatgtattttaggatagatttttttaaaatttctgcaaaaacatcattgggatttttacaggtattgcattaaatctgtagattctctgggtagtattgatatcttaacaatattaaatcctacaatccatgatctcaggatgtcttttcatttatttgtatcttctttaatttctttcagtaacattttgtagtttctggtgtacaaatctttcccctccaaggttaagtttgttcctaagtattttattctttattttatttttattattattattattttttgaaatggagtctcactctgtcacccaggctggagtgaagtggcacaatcttggctcactgtaacctccacctcctgggttcaagcaattctcatgcctcagcctccccagtagctgggaccataggcatccacgaacatgcctggctaatttttgtatttttagtagagacagggttttactatattggccacgctggacttgaa i ponAbe2.chr17 M 30000 C 0 s nomLeu3.chr19 48061671 535 - 81552678 ccaactttgttcttttttaagattgttttggctatataggaccccttctgatttcatatgtattttaggatggattttttttaaatttctgcaaaaacgtcattgggatttttatagggattgcattaaatctgtagattctctgggtagtattgccatcttaacaatgttaaatcctacaatccatgatatcaagatgtcttttcatttatttgtgtcttctttaatttctttcagtaacattttgtagtttctgatgtacaagtctttcccctccaaggttaagtttgttcctcagtattttattcttta-----------ttattattattattatttgaaatggagtctcactctgtcacccaggctggagtgcagtggcacaatcttggctcactgtaacctccacctcctgggttcaagcaattctcttgcctcagcctccccagtagctgggaccataggcatccacgaccatgtctggctaatttttgtatttttagtagagacagggtttcactatattggccaggctggacttgaa i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 39424831 5557 - 61074082 I e mm10.chr11 99584670 5716 + 122082543 I e calJac3.chr5 112874781 4159 + 159171411 I e chlSab2.chr16 9997346 1205 - 75148670 I e papAnu2.chr16 47730563 3979 + 74645514 I e macFas5.chr16 52727795 3673 + 80997621 I e rheMac3.chr16 53163402 3695 + 80904711 I a score=85259.000000 s hg38.chr17_JH159146v1_alt 182724 155 + 278131 ctcctaacctcaggtgatctgcccacctcagcttaccaaagtgctgggattacaggcatgagccaccatgcccggccataagtattttattctttt------------gatggaattgtttttaaaattttccttacagatttttcatggttagtatatagaaatgc s panTro4.chr17 66301867 155 - 82630442 ctcctaacctcaggtgatctgcccacctcagcttaccaaagtgctgggattacaggcatgagccaccatgcccggccataagtattttattctttt------------gatggaattgtttttaaaattttccttacagatttttcatggttagtatatagaaatgc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24835829 167 - 73212453 ctcttaacctcaggtgatctgcctgcctcagcttaccaaagtgctgggattacaagcatgagccaccatgcccggccataagtattttattctttcaatgttattgtaaatggaattgtttttaaaattttacttacagatttttcatggttagtatatagaagtgc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48062206 167 - 81552678 ctcctaacctcaggtgatctgcccgcctcagcttaccaaagtgctgggactacaggcatgagccaccatgcctggccataagtattttattcttttgatgttattgtaaatggaattgtttttaaaattttccttacagatttttcatggttagtatatagaaatgc i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112878940 86 + 159171411 ctcctgggttcaattgattctcctgcctcagccctccgagtagctgggattacaggtgcaggtcaccatgctcagc-----------tattttttt------------g---------------------------------------------------------- i calJac3.chr5 I 4159 C 0 e canFam3.chr9 39424831 5557 - 61074082 I e mm10.chr11 99584670 5716 + 122082543 I e chlSab2.chr16 9997346 1205 - 75148670 I e papAnu2.chr16 47730563 3979 + 74645514 I e macFas5.chr16 52727795 3673 + 80997621 I e rheMac3.chr16 53163402 3695 + 80904711 I a score=23.000000 s hg38.chr17_JH159146v1_alt 182879 10 + 278131 -aatttatttt s panTro4.chr17 66302022 10 - 82630442 -aatttatttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24835996 9 - 73212453 -aattga-ttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48062373 9 - 81552678 -aattga-ttt i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52731468 10 + 80997621 -aattttttgt i macFas5.chr16 I 3673 I 2 s papAnu2.chr16 47734542 10 + 74645514 -aattttttgt i papAnu2.chr16 I 3979 I 2 s calJac3.chr5 112879026 2 + 159171411 ca--------- i calJac3.chr5 C 0 C 0 e canFam3.chr9 39424831 5557 - 61074082 I e mm10.chr11 99584670 5716 + 122082543 I e chlSab2.chr16 9997346 1205 - 75148670 I e rheMac3.chr16 53163402 3695 + 80904711 I a score=374422.000000 s hg38.chr17_JH159146v1_alt 182889 121 + 278131 ttttagtagagatggggtttcaccatgttggccaagctgatctcaaactcccgacctcgtgatctgtctaccttggcctcccaaaatgctgggattacaggtgtgagccaccgtacccagc s panTro4.chr17 66302032 121 - 82630442 ttttagtagagatggggtttcaccatgttggccaagctgatctcaaactcccgacctcgtgatctgcccaccttggcctcccaaaatgctgggattacaggtgtgagccaccgtacccagc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24836005 121 - 73212453 ttttagtagagatggggtttcaccatgttggccaagctgatctcaaactcccaatctcatgatctgcccacattggcctcccaaaatgctgggattacaggtgtgagccaccacacccagc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48062382 121 - 81552678 ttttagtagagatggggtttcaccatgttggccaagctgatctcaaactcctggcctcgtgatctgcccaccttggcctcccaaaatgctgggattacaggtgtgagccaccatacctagc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53167097 121 + 80904711 ttttagtagagatggggtttcaccaggttggccaagctgatctcgaactcctcacctagtgatctgcccacctcggcctcccaaaatgctgggattacaggtgtgagccactgcacccagc i rheMac3.chr16 I 3695 C 0 s macFas5.chr16 52731480 121 + 80997621 ttttagtagagatggggtttcaccaggttggccaagctgatctcgaactcctcacctagtgatctgcccacctcggcctcccaaaatgctgggattacaggtgtgagccactgcacccagc i macFas5.chr16 I 2 C 0 s papAnu2.chr16 47734554 121 + 74645514 ttttagtagagatggggtttcaccaggttggccaagctgatctcgaactcctgacctagtgatctgcccacctctgcctcccaaaatgctgggattacaggtgtgagccactgcacccagc i papAnu2.chr16 I 2 C 0 s chlSab2.chr16 9998551 121 - 75148670 ttttagtagagatggggtttcaccaggttggccaagctgatctcgaactcctgacctagtgatctgcccacctccgcctcccaaaatgctgggattacaggtgtgagccgccgcacccagc i chlSab2.chr16 I 1205 C 0 s calJac3.chr5 112879028 121 + 159171411 ttttagtagagatggggtttcaccatgttggccaagctggtctcgaactcctgactttgtgatctgcccacctcggcctcccaaagtgctaggattacaggtgtgagccaccacacccagc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39424831 5557 - 61074082 I e mm10.chr11 99584670 5716 + 122082543 I a score=632214.000000 s hg38.chr17_JH159146v1_alt 183010 186 + 278131 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTGCCATTTCTGAGGCCCTAAATAACTACACTTACTCTATGTTTTTATGGTCATTAACCTCCACTGGACCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT s panTro4.chr17 66302153 186 - 82630442 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGTTTAAGTTATGGTAACAGAGCCTTTGCCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGTCATTAACCTCCACTGGACCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24836126 186 - 73212453 cAGAGAATTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCAGTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTGCCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGTCATTAACCTCCACTGGACCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48062503 186 - 81552678 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTGCCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGTCATTAACCTCACTGGGACCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53167218 186 + 80904711 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTACCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGGCATTAACCTCCACTGGGCCTCTGGATATCAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52731601 186 + 80997621 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTACCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGGCATTAACCTCCACTGGGCCTCTGGATATCAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47734675 186 + 74645514 cagagatTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAAGTTAAGTTATGGTAACAGAGCCTTTACCATTTCTGAGGCCCTAAATAACTACATTTACTCTATGTTTTTATGGGCATTAACCTCCACAGGGCCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9998672 186 - 75148670 cAGAGATTTTGATTTCTGTAACTTCCTGGT--TGTGAAAGCACTGTGTAAGGTTAAGTTATGGTAACAGAGCCTTTACCATTTCTGAGGCCATAAATAACTACATTTACTCTGTGTTTTTACGGGCATTAACCTCCACTGGATCTCTGGATAACAAATTTCCT-------AATGTGGTATTAGAAGAGAAGGGAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112879149 188 + 159171411 cAGAGATTTTTATTTCTATAACTTCCTGGTTGTGTGAAAGCACTGTGTAAGGTTAGGTTATGGCAACAGAGCCTTTGCCATTTCCGAGGCCCTAAGTAACTACCTTTACTGTATCTTTTTACAGGTGTTAACCTCCAATGGACCTCTGGGTACCAAATTTCCT-------CATGTGGTTTCAGAAGGGAAGGGAT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39430388 167 - 61074082 CAGAGTTCCCGATTTCTGTAACTC--------TATGGAAACATTTTGTGAGGTCAAGATTTGGAAATAGAGCCTGTGCCACTTCTGAGGCCCTATATAACTGCCTTTGCTTTATCTTTCTATGGGGATTAACATCCATTGGATCT-----GATTAAATTTCCTAGACAGCAATGTGGGAT--------------- i canFam3.chr9 I 5557 C 0 e mm10.chr11 99584670 5716 + 122082543 I a score=404202.000000 s hg38.chr17_JH159146v1_alt 183196 115 + 278131 ATCAAAAGCAGATT-AAAGTTTTTCATATGACATTCTATGAAATATACATCCTGAGTACACTCAATGAAA-AAAAAAAGATATGTTTGTTG-CACCAATAGTTAAAATTTATTAGACC s panTro4.chr17 66302339 114 - 82630442 ATCAAAAGCAGATT-AAAGTTTTTCATATGACATTCTATGAAATATACATCCTGAGTACACTCAATG-AA-AAAAAAAGATATGTTTGTTG-CACCAATAGTTAAAATTTATTAGACC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24836312 115 - 73212453 ATCAAAAGCAGATT-AAAATTTTTCATATGACATTCTATGAAATATACATCCTGAGTACACTCAATG-AA-AAAAAAAGATATGTTTGTTGCCACCAATAGTTAAATTTTATTAGACC i ponAbe2.chr17 C 0 I 788 s nomLeu3.chr19 48062689 114 - 81552678 ATCAAAAGCAGATT-AAAATTTTTCATATGACATTCTATGAAATATACATCCTGAGTACACTCAATG-AA-AAAAAAAGATATGTTTGTTG-CACCAATAGTTAAAATTTATTAGGTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53167404 114 + 80904711 ATCAAAAGCAGATT-AAAATTTTTCATATGACATTCTATGAAATATAAATCCTGAATACACTCAATG-AA-AAAAAGAGACATGTTTGTTG-CACCAATAGTTACAATTTATTAGACC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52731787 114 + 80997621 ATCAAAAGCAGATT-AAAATTTTTCATATGACATTCTATGAAATATAAATCCTGAATACACTCAATG-AA-AAAAAGAGACATGTTTGTTG-CACCAGTAGTTACAATTTATTAGACC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47734861 114 + 74645514 ATCAAAAGCagatt-aaaatttttcatatgaCATTCTATGAAATATACATCCTGAATACACTCaatg-aa-aaaaagagacatgTTTGTTG-CACCAATAGTTACAATTTATTAGACC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9998858 114 - 75148670 ATCAAAAGCAGATT-AAAATTTTTCATATGACATCCTATGAAATATACATCCTGAATACACTCAATG-AA-AAAAAAAGACATGTTTGTTG-CACCAATAGTTACAATTTATTAGACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112879337 113 + 159171411 ATCAAAAGCAGATTAAAAATTTTTCATATGATGTTCTATGAAATATACATCATGATTACATTCAATA----AAAAAGAGATATGTTTGTTG-CACCAATAGTTATAATTTATTAGACC i calJac3.chr5 C 0 C 0 s mm10.chr11 99590386 107 + 122082543 ATCAAACTCA-----GAAATCTTTTAGATGGATCTCCATGAAGTATCTATTATTTGCACACTAAATA----AAAAGAAGCAAGTTTTGATA-TGCCAACAGATATAATTTATTATTT- i mm10.chr11 I 5716 C 0 s canFam3.chr9 39430555 110 - 61074082 ATCCAAAACAGACT-AAAATCTTT--AGTGACTTTTTATGAAATACATATAAAGAACACACTCAATG-AAGAAGAATAGATATGTTTGTTG-CACCAA---ATAAAATTTAATAGACC i canFam3.chr9 C 0 C 0 a score=1476562.000000 s hg38.chr17_JH159146v1_alt 183311 513 + 278131 TTGGTATATTATTCCTCTTTC-ATAGGGGGTGCAATTTGCAGGACGGTGGGATACAGGAAGTGAGTGT-CCTGAGAAGGACAGATGGCTCTTCCATGGTCTCGTCGGCGCTGAGACTCAGAGCGTGGGCTTCAATGCTTGCAAAGGCTCAGTTTCAAGGTAAATCGGCTTTTTCATTTCTTGGGTCAAATTTGTATTTTGGCGTCCTCAGAGAGAAGAGTAAGGTC-TTTCTGGAATTGAAAGGAATCAGATAATTC--TGAGGCCAAAATATTTGGTAACCCCCATAAG-AAAGACAAAGAAAGGTTGAAGAATTTGTTCGTTGTCCATAAGTGCTTGAAGAAATAATTCGTTCATGAATGGAACTGAAAGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTTTAGCAGGTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGTT s panTro4.chr17 66302453 514 - 82630442 TTGGTATATTATTCCTCTTTCAATAGGGGGTGCAATTTGCAGGACGGTGGGATACAGGAAGTGAGTGT-CCTGAGAAGGACAGATGGCTCTTCCATGGTCTCGTCGGCGCTGAGACTCAGAGCGTGGGCTTCAATGCTTGCAAAGGCTCAGTTTCAAGGTAAATCGGCTTTTTCATTTCTTGGGTCAAATTTGTATTTTGGCGTCCTCAGAGAGAAGAGTAAGGTC-TTTCTGGAATTGAAAGGAATCAGATAACTC--TGAGGCCAAAATATTTGGTAGCCCCCATAAG-AAAGCCAAAGAAAGGTTGAAGAATTTGTTAGTTGTCCATAAGTGCTTGAAGAAATAATTTGTTCATGAATGGAACTGAAAGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTTTAGCAGGTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGAT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48062803 513 - 81552678 TTGGTATATTATTCCTCTTTC-ATAGGAGGTGCAATTTGCAGGACGGTGGAATACAGGAAGTGAGTGT-CCTGAGAAGGACAGATGGCTCTTCCATGGTCTCATCGGCGCTGAGACTCAGAGCGTGGGCTTCAATGCTTATAAAGGCTCAATTTCAAGGTAAATCGGCTTTTTCATTTCTTGGGTCAAATTTGTATTTTGGTGTCCTCAGAGAGAAGAGCAAGTTC-TTTCTGGAATTGAAAGGAATCAGATAATTC--TGAGGCCGAAATATTTGGTAACCCCCATAAC-AAAGCCAAAGAAAGTTTCAAGAATTTGTTAGTGGTCCATAAGTGCTTGAAGAAATAATTCGTTCATGAATTGAACTGAAGGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTTTAGCAGGTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGTTGACAGCAGGAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53167518 510 + 80904711 TTGGTGTATTATTCCTCTTTC-ATAGGGGGTGCAATTTGCAGGGTGGTGGAATAGAGAAAGTGAGTGT-CCTGAGAAGAACAGATGGCTCTTCCATGGTCTCGTCGGCACTGAGACTCAGAGCGTGGGCTTCAATGCTTGT-AAGGGTCAATTTCAAGGTAAATCGGCTTTTTCATTTTTTGGGTCAAATTTGTAATTTG--GTCCTCAGAGAGAAGAGCAAGGTC-TTTCTGGAATTGAAAGGAATCAGGTAATTC--TGAGGCCTAAATATTTGGTAACCCCCATAAC-AAAGCCAAAGAAAAGTTCAAGAATTTGTTAGTGGTCCACAAGTGCTTGAAGAAATAATTCATTCATGAATTGAACTGAAAGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTCTAGCAGCTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52731901 493 + 80997621 TTGGTGTATTATTCCTCTTTC-ATAGGG-----------------GGTGGAATAGAGAAAGTGAGTGT-CCTGAGAAGAACAGATGGCTCTTCCATGGTCTCGTCGGCACTGAGACTCAGAGCGTGGGCTTCAATGCTTGT-AAGGGTCAATTTCAAGGTAAATCGGCTTTTTCATTTTTTGGGTCAAATTTGTATTTTG--GTCCTCAGAGAGAAGAGCAAGGTC-TTTCTGGAATTGAAAGGAATCAGGTAATTC--TGAGGCCTAAATATTTGGTAACCCCCATAAC-AAAGCCAAAGAAAAGTTCAAGAATTTGTTAGTGGTCCACAAGTGCTTGAAGAAATAATTCATTCATGAATTGAACTGAAAGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTCTAGCAGCTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47734975 513 + 74645514 TTGGTGTATTATTCCTCTTTC-ATAGGGGGTGCAATTTGCAGGGTGGTGGAATAGAGAAAGTGAGTGT-CCTGAGAAGAACAGATGGCTCTTCCATGGTCTCGTCGGCACTGAGACTCAGAGCGTGGGCTTCAATGCTTGTAAAGGGTCAATTTCAAGGTAAATcggctttttcattttttgggtCAAACTTGTATTTTGGCGTCCTCAGAGAGAAGAGCAAGGTC-TTTCTGGAACTGAAAGGAATCAGGTAATTC--TGAGGCCTAAATATTTGGTAACCCCCATAAC-AAAGCCAAAGAAAAGTTCAAGAATTTGTTAGTGGTCCACAAGTGCTTGAAGAAATAATTCATTCATGAATTGAACTGAAAGTGGAAATTTCAAGTTGAAAATCAGCAAACTGGCTTTTAGCAGCTGGGCTCA------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9998972 513 - 75148670 TTGATGTATTATTCCTCTTTC-ATAGGGGGTGCAATTTGCAGGGTGGTGGAATAGAGAAAGTGAGTGT-CCTGAGAAGAACAGATGGCTCTTCCATGGTCTTGTCGGCACTGAGACTCAGAGCGTGGGCTTCAATGCTTGTAAAGGGTCAGTTTCAAGGTAAATCGGCTTTTTCATTTATTGGGTCAAATTTGTATTTTGGCATCCTCAGAGAGAAGAGCAAGGTC-TTTCTAGAATTGAAAGGAATCAGATAATTC--TGAGGCCTAAATATTTGGTAACCCCCATAAC-AAAGCCAAAGAAAAGTTCAAGAATTTGTTAGTGGTCCACAAGTGCTTGAAGAAATAATCCGTTCATGAATTGAACTgaaagtggaaatttcaagttgaaaattggcaaactggCTTTTAGCAGCTGGGCTCG------------------------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCATGGTGCAGCTGGCAGCAGGAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112879450 485 + 159171411 TTGTTATATTATCTCTCTTTC-ATACAAAGTGCAATT--CAGGGTGGTGGAATAGAGGAAG----------TGAGAAGGACAGACAGCTCTTCCATGGTCTTGGCAATGCTGAGCCTCAGAGCATGGGCTTCGGTGCTTGC-------------------AAATTGGCTTTTTCATTTCTTGCGTCCAATTTGTATTTTGGCGTCCTCAGAGAGAAGATCGAAGTCTTTTCTGGAGCACAAAGGAATCAGATAATTC--TGAGGCCTAAATATCTGGTAACCCCCATAACAAAAGCCAAATTAAAGTTCAAGAATTTGTTAGTGGTCCACAAGTGCTTGAAGAAATAATTAGTTCATGAATTCAACTGGAAGTGAAAGTTTCAAGTTGAAAATCAGCAACCTGGCTTTTAGCAGGTGGGCCCA------------------------------CAGCAGGAGTAGCAGCAGACTGGGCGGCAGCCGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGAT i calJac3.chr5 C 0 C 0 s mm10.chr11 99590493 446 + 122082543 TGGATACATTAGCCTTCATTT-ATAAGAGG---AATTTACAGAACAATGGAAGAAGAATGAAAACTAT-CTT----CGTGTAGAAGAATCTTCCATGGCCTTGACAGCACCAAGCCTTGGAAAAT------------------AGGGACAATCCCAAGGTAAATTGATTTTCTTGTTTG-GGGATCAAGTTTGTATTTTATTATTTTCATAGAGGATATCAAAGCC-TTTCCAGTATTAGATGGAAAAAAATGTTTA--GTAAGGCCAAGTATTTGTG---CCCCAAACA-CAAGCCATATCAAAATTCAAGATCCT--------------------------------------------------------------------TTGGGAATCAGCAACCTGGGTCTTAACAGGTAGGCTCACAGCAGTTAGACTCAGAGCAGCTGGGTGGGCAGCAGTAGCAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAATAGGATGGACGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39430665 522 - 61074082 TTGGTATATTAATTCCCTTTC-ATAAAAACTGCAGCTTGCAGAACGGTGGCATAGAGGAGGTGTACATATCTGAGAAGGACAGATGGTTCTTCTGTGGCATCGGTGGCACTGAGTCATAGAGAGTAAATTCACATGCGTCC------------TGAAGGCAA-------------TTTCTTGAGTTAAATTTATATTTTGGCAACCTCAGTGGGGAGAATGAGGTC-TTTCCAGAATTGAATGGAATCAGATAGATCTGTGAGGCCCAAATGTGTGGTATCCCCCACAACAAAATCCAAATAAAAGTTCAAGAATTTGTTAGTGGTCCATGATTAGTGGAAGAGAAAATTAGTTCATGAATTGATTTGGAAGTTGAAACTTCAAATCAAAAATCAACAACCTGGCTTTTAGCAGGTGGGCTCACAACAGGTGGGCTGGCAGCAGGTGGGCTGGCAGCAGTAGGAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTT i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24836427 788 - 73212453 I a score=659484.000000 s hg38.chr17_JH159146v1_alt 183824 154 + 278131 GGGGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGgccatagccaatgccaccaccaatgccacagccaGTTCCGCAGG s panTro4.chr17 66302967 154 - 82630442 GGGGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAGCCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCAATGCCACCACCAATGCCACAGCCAGTTCCACAGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24837215 156 - 73212453 GGGGGTGTGCAGCTCACCACGCCAGCAGGGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCACAGCCAGTTCTGCAGG i ponAbe2.chr17 I 788 C 0 s nomLeu3.chr19 48063316 154 - 81552678 GGGGGCGTGCAGCTAACCACA-CAGCA-GGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCACAGCCAGTTCCGCAGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53168028 154 + 80904711 GGGGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGATCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCACAGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52732394 154 + 80997621 GGAGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGATCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCACAGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47735488 154 + 74645514 GGGGGTGTGCAGCTCACCACG-CAGCA-GGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACGGATCCACTGCTGCCCTCTTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCgcagg i papAnu2.chr16 C 0 T 10357 s chlSab2.chr16 9999485 154 - 75148670 GGGGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAAGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCATAGCTGGTTCCGCAGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112879935 154 + 159171411 GGGGGTGTGCAGCTCACCACA-CAGCA-GGGGGGCAGGCAGGTGCCTTCTGCACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACAGCCACCCTCCTGGCCACAGCCGATGCTACCACCAATGCCACAGCCGGTTCCGCAGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99590939 130 + 122082543 GGGGGTGTGCAGCTTACCACA-CAGCA-GGGGGGCAGGCAGGTGCCCTCCACGCGGCAGTCAGGGCGGCACCATCTAACACGGCAGCTCACGGCTCCACTGCCACCCTCCTGGCC------------ACTGCCAGTTCCACAGC------------ i mm10.chr11 C 0 C 0 s canFam3.chr9 39431187 137 - 61074082 GGGGGTGTGCAGCTCACCACG-CAGCA-GGGGGGCAGGCAGGTGTCCTCCACGCGGCAGTCAGGGCGGCACCACCTGACTCGGCAGCTCATAGCTCCACTGCCACCCTCCTGGCC------------ACCACCAATGCCACAGCCAGTCCC----- i canFam3.chr9 C 0 C 0 a score=132949.000000 s hg38.chr17_JH159146v1_alt 183978 32 + 278131 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG s panTro4.chr17 66303121 32 - 82630442 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24837371 47 - 73212453 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTTGGCTGGCAGCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063470 32 - 81552678 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53168182 32 + 80904711 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52732548 32 + 80997621 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47725285 32 + 74645514 agctggt---------------ctggcagcagcttggctggcagcag i papAnu2.chr16 T 10357 C 0 s chlSab2.chr16 9999639 32 - 75148670 AGCTGGT---------------CTGGCAGCAGCTTGGCTGACAGCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112880089 32 + 159171411 AGCTGGT---------------CTGGCAGCAGCTTGGCTGGCAGCAG i calJac3.chr5 C 0 T 10872 s mm10.chr11 99591069 32 + 122082543 Agctggg---------------ctggcagcagctgggctggcaacag i mm10.chr11 C 0 C 0 s canFam3.chr9 39431324 19 - 61074082 ----------------------------ACAGCTGGGCTGGCAGCAG i canFam3.chr9 C 0 C 0 a score=117937.000000 s hg38.chr17_JH159146v1_alt 184010 30 + 278131 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAA s panTro4.chr17 66303153 30 - 82630442 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24837418 30 - 73212453 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063502 30 - 81552678 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53168214 30 + 80904711 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52732580 30 + 80997621 CTGGTCTCA------------------------------CAGCAGCTTGGCTGGCAGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47725317 30 + 74645514 ctggtctca------------------------------cagcagcttggctggcagcag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9999671 60 - 75148670 CTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTGGCAGCAGCTTGGCTGGCAACAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112869249 30 + 159171411 CTGGTCTGA------------------------------CAGCAGCTTGGCTGGCAGCAG i calJac3.chr5 T 10872 I 10842 s mm10.chr11 99591101 30 + 122082543 ctggtctgg------------------------------gagcagcaaggttggcagcaa i mm10.chr11 C 0 C 0 s canFam3.chr9 39431343 28 - 61074082 CTGGTCTGA------------------------------CAGCAAGTTGGCTGGCAGC-- i canFam3.chr9 C 0 C 0 a score=139245.000000 s hg38.chr17_JH159146v1_alt 184040 46 + 278131 CTGGAGCTGCAG-----------------GTCCCACTAGTTGAGAAGCTAGGAAATCCGCAGA s panTro4.chr17 66303183 46 - 82630442 CTGGAGCTGCAG-----------------GTCCCACTGGTTGAGAAGCTGGGAAATCCGCAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24837448 46 - 73212453 CTGGAGCTGCAG-----------------GTCTCACTGGTCGAGAAGCTGGGAAATCCGCAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063532 46 - 81552678 CTGGAGCTGCAG-----------------GTCCCACTGGTTGAGAACCTGGGAAATCCGCAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53168244 46 + 80904711 CTGGAGCCACAG-----------------GTCCCACTGGTTGAGAAGCTGGGAAATCCACAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52732610 46 + 80997621 CTGGAGCCACAG-----------------GTCCCACTGGTTGAGAAGCTGGGAAATCCACAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47725347 46 + 74645514 ctggagcCACAG-----------------GTCCCACTGGTTGAGAAGCTGGGAAATCCgcaga i papAnu2.chr16 C 0 I 10249 s chlSab2.chr16 9999731 46 - 75148670 CTGGAGCCACAG-----------------GTCCCACTGGTTGAGAAGCTGGGAAATCCGCAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112880121 46 + 159171411 CTGGAGCCGCAG-----------------GTCCCACTGGTTGAGCAGCTGGGAAATCCACAGA i calJac3.chr5 I 10842 C 0 s mm10.chr11 99591131 58 + 122082543 ctggattggcagcagctgggctggcaacagctggactggc--agcagctgggctggcagc--- i mm10.chr11 C 0 C 0 e canFam3.chr9 39431371 0 - 61074082 C a score=514326.000000 s hg38.chr17_JH159146v1_alt 184086 118 + 278131 AGCTGGTCTGGCAGCAGC------------------------------TTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGAGCAGCTGGGATATCCACAGAAGCTGGTCTG s panTro4.chr17 66303229 118 - 82630442 AGCTGGTCTGGCAGCAGC------------------------------TTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGAGCAGCTGGGATATCCACAGAAGCTGGTCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24837494 118 - 73212453 AGCTGGTCTGGCAGCTGC------------------------------GTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGAGCAGCTGGGATATCCACAGAAACTGGTCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063578 148 - 81552678 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGTTTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGAGCAGCTGGGATATCCACAGAAGCTGGTCTG i nomLeu3.chr19 C 0 T 7875 s rheMac3.chr16 53168290 118 + 80904711 AGCTGGTCTGGCAGCAGCT------------------------------TGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52732656 148 + 80997621 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47735642 118 + 74645514 agctggtctggcagcagct------------------------------tggctggcagcagctggtctcacagcagcttggctggcagcagctggagccgcagGTCCCACTGGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTG i papAnu2.chr16 I 10249 C 0 s chlSab2.chr16 9999777 148 - 75148670 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGTCTCACAGCAGCGTGGCTGGCAGCAGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112880167 118 + 159171411 AGCTGGTCTGGCAGCAGC------------------------------TTGGCTGGCAGCAGCTGGTCTGACAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTAGTGGAGCAGCTGGGAAATCCGCAGAAGCTGGTCTG i calJac3.chr5 C 0 I 78 s mm10.chr11 99591189 118 + 122082543 agctggactgggagcagc------------------------------taggctggcagcagctgggctggcagcagctgggctggCAGCAGCTGGAGCCACAGGTGCCACCAGTGGAACATGTGGGAAAGCCACAGAAGCTAGTAGC i mm10.chr11 C 0 C 0 s canFam3.chr9 39431371 118 - 61074082 AGCTGGTCTGGCAGCTGG------------------------------TTGGCTGGCAGCAGCTGGTCTGACAGCAGCTAGGCTGGCAGCAGCTGGAGCCACAGTTCCCACTGGTGGAGCAGGTGGGAAATCCACAGAAGCTAGTGGA i canFam3.chr9 C 0 C 0 a score=107264.000000 s hg38.chr17_JH159146v1_alt 184204 28 + 278131 GCAGCAGG-TCATGGTGTTGGGAGCTGGT s panTro4.chr17 66303347 28 - 82630442 GCAGCAGG-TCATGGTGTTGGGAGCTGGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24837612 28 - 73212453 GCAGCAGG-TCATGGTGTTGGGAGCTGGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48055851 28 - 81552678 GCAGCAGG-TCATGGTGTCGGGAGCTGGG i nomLeu3.chr19 T 7875 C 0 s rheMac3.chr16 53168408 28 + 80904711 ACAGCAGG-CCATGGTGTCAGGAGTTGGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52732804 28 + 80997621 ACAGCAGG-CCATGGTGTCAGGAGTTGGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47735760 29 + 74645514 ACAGCAGGCCCATGGTGTCAGGAGTTGGT i papAnu2.chr16 C 0 I 3 s chlSab2.chr16 9999925 28 - 75148670 ACAGCAGG-CCATGGTGTCAGGAGTTGGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112880363 28 + 159171411 ACAGCAGG-CCATGTTGTCAGGAGTTGGT i calJac3.chr5 I 78 C 0 s mm10.chr11 99591307 28 + 122082543 GCAGCAGG-CCATGGTGTCAGAAGTTGAT i mm10.chr11 C 0 I 5 s canFam3.chr9 39431489 26 - 61074082 GCAGCAGG-CCATG--GTCAGAACTTAGG i canFam3.chr9 C 0 C 0 a score=9308.000000 s hg38.chr17_JH159146v1_alt 184232 3 + 278131 ATG s panTro4.chr17 66303375 3 - 82630442 CTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24837640 3 - 73212453 CTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48055879 3 - 81552678 TTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53168436 3 + 80904711 CTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52732832 3 + 80997621 CTG i macFas5.chr16 C 0 C 0 s chlSab2.chr16 9999953 3 - 75148670 CTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112880391 3 + 159171411 CTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99591340 3 + 122082543 CTG i mm10.chr11 I 5 C 0 s canFam3.chr9 39431515 3 - 61074082 TTG i canFam3.chr9 C 0 C 0 e papAnu2.chr16 47735789 3 + 74645514 I a score=253929.000000 s hg38.chr17_JH159146v1_alt 184235 64 + 278131 AAGTCTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACATTGGGCCTTTTATA s panTro4.chr17 66303378 63 - 82630442 AAGTCTGGGTT-CTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACATTGGGCCTTTTATA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24837643 64 - 73212453 AAGTCTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACATTGGGCCTTTTATA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48055882 63 - 81552678 AGAGTTAGGTTGC-TGGAGGAG-TTTCTGAGTTTTGGTGGTGACTTCCACATTGGCCCTTTTATA i nomLeu3.chr19 C 0 I 7254 s rheMac3.chr16 53168439 64 + 80904711 AAGTTTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACACTGGGCCTTTTATA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52732835 64 + 80997621 AAGTTTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACACTGGGCCTTTTATA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47735792 64 + 74645514 AAGTTTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACACTGGGCCTTTTATA i papAnu2.chr16 I 3 C 0 s chlSab2.chr16 9999956 64 - 75148670 AAGTTTGGGTTGCTTGGAGGAG-TTTCTGAGTTTTGGTGATGGCTGCCACACTGGGCCTTTTATA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112880394 64 + 159171411 AAGGTTGGGTTGCTTGGAGGAG-TTTTTGAGTTTTGGTGATGGCTGCCACACTGGGCCTTTTATA i calJac3.chr5 C 0 C 0 s mm10.chr11 99591343 65 + 122082543 AAGGTTTGTTTGCTTAGAGAAGTTTTTTGAATTTGTGTGGTGAGTGCCACTCCAGTCTTTTTATA i mm10.chr11 C 0 C 0 s canFam3.chr9 39431518 64 - 61074082 AGAGCTGGGTTGCTAAGAGAAG-TTTTTGAGATTTGGTAGTGACTTCCATGCTGGGCCTTTTATA i canFam3.chr9 C 0 C 0 a score=1825017.000000 s hg38.chr17_JH159146v1_alt 184299 610 + 278131 AGCCTGGGCCAGCTACTGTTTACATAATTCCAGAAGTCTCTTGCTTATTTGTGTTGG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAATTATTTGTTGAACCTACTGAGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAGGCTTCTTTACCATGGTCAAGAAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCTCATGTTTCTTAAAATTTCCTCATGGTCA-AGGAATAATTGAC---------TGATGCCTCACC--TTTAAGGATTGTC-AATATTACTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAATTTTAACTGTGGCTCCTTCTCTAACTTTCTTATCTTCCCTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCTGGGAGATTTGCATTAATTGCTATTGATaaca-ttttcccatcactgattatgtgcctaaatagttctgagtacttcgcatgtatcaatttgctgaattttcacggcaatc-tatgggctaggtatcactgccactcccatcaaccatgtgagaaaactgagccacaac- s panTro4.chr17 66303441 610 - 82630442 AGCCTTGGCCAGCTACTGTTTACATAATTCCTGAAGTCTCTTCCTTATTTGCGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAATTATTTGTTGAACCTACTGAGAGCCTTT-GAAAGTTGATTCTATTTGGTCTGCAATTAGGCTTCTTTACCATGGTCAAGAAGTCATTGGAATTAATTAGGAATGTGATCCCTAACTCCTCATGTTTCTTAAAATTTCCTCATGGTCA-AGGAATAATTGAC---------TGATGCCTCACT--TTTAAGGATTGTC-AATATTACTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAATTTTAACTGTGGCTCCTTCTCTAACTTTCTTATCTTCCCTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----CGG-GCCTGGGAGATTTGCATTAATTGCTATTGATaaca-tttttccatcgctgattatgtgcctaaatagttctgagtacttcatatgtgtcaatttgctgaattttcacagcaatc-tatgggctagatatcattgccattcccatcaaccatgtgagaaaactgagccacaac- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24837707 609 - 73212453 AGCCTTGGCCAGCTACTGTTTACATAATTCCTGAAGTCTCTTCCTTATTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAATTATTTGTTGAACCTACTGAGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAGGCTTCTTTACCGTGGTCAAGTAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCTCATGTTTCTTAAAATTTCCTCATGGTCA-AGGAATAATTGAC---------TGATGCCTCACC--TTTAAGGATTGTC-AACATTACTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCCATTTTAACTGCAG-TCCTTCTCTAACTTTCTTATCTTCCCTTTGACTGTGAAGCAAGACTACATTCAGCTGGTCAGAAAGGGATGCTTTCT----CAG-GCCTGGGAGACTGGCATTAATTGCTCTTGATaaca-tttttccatcactgattatgtgcctaaatagttctgagtacttcgcatgtgtcaatttgctgaattttcacagcaatc-tatgggctaggtatcattgccactcccatcaaccatgtgagaaaactgagccacaac- i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53168503 610 + 80904711 AGCCTTGGCCAGCTACTGTTTACATAATTCCTGAAGTCTCTTCCTTATTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAGTTATTTGTTGAACCTTCTGGGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAAGCTTCTTTACCATGGTCAAGTAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCCCATGTTTCTTAAAATTTTCTCATGGTCG-AGGAATAATTGAC---------TGATGCTTCACC--TTTAAGGATTGTC-AATATTATTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAGTTTTAACTGCGGCTCCTTCTCTACCTTCCTTATCTTCCCTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCAGGGAGATTTGCATTAATTGCTATTCATaaca-tttttccatcactgattatgtgcctaaatggttctgagtactttgtatgtatcaacttgctgaattttgacagcaatc-tgtggactaggtatcactgccactcccatcaaccatgtgagaaaactgagccacaac- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52732899 610 + 80997621 AGCCTTGGCCAGCTACTGTTTACATAATTCCTGAAGTCTCTTCCTTATTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAGTTATTTGTTGAACCTTCTGGGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAAGCTTCTTTACCATGGTCAAGTAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCCCATGTTTCTTAAAATTTTCTCATGGTCG-AGGAATAATTGAC---------TGATGCTTCACC--TTTAAGGATTGTC-AATATTATTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAGTTTTAACTGCGGCTCCTTCTCTACCTTCCTTATCTTCCCTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCAGGGAGATTTGCATTAATTGCTATTCATaaca-tttttccatcactgattatgtgcctaaatggttctgagtactttgtatgtatcaacttgctgaattttgacagcaatc-tgtggactaggtatcactgccactcccatcaaccatgtgagaaaactgagccacaac- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47735856 610 + 74645514 AGCCTTGGCCAGCTACTGTTTACATAATTCCTGAAGTCTCTTCCTTATTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAGTTATTTGTTGAACCTTCTGGGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAAGCTTCTTTACCATGGTCAAGTAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCccatgtttcttaaaattttctcatGGTCG-AGGAATAATTGAC---------TGATGCTTCACC--TTTAAGGATTGTC-AATATTATTCAG---TGTTGACCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAATTTTAACTGCAGCTCCTTCTCTGCCTTCCTTATCTTCCCTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCAGGGAGATTTGCATTAATTGCTATTCATAACA-TTTTTCCATCACTGATTATGTGTCTAAATGGTTCTGAGTACTTTGTATGTATCAACTTGCTGAATTTTGACAGCAATC-TGTGGACTAGGTATCACTGCCACTCCCATCAACCATGTGAGAAAACTGAGCCACAAC- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10000020 610 - 75148670 AGCCTTGGCCAGCTACTGTTTACATAATTTCTGAAGTCTCTTCCTTATTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGCCTCTCCCTGAGTTATTTGTTGAACCTTCTGGGAGCCTTT-GAAAGTTGATTGTATTTGGTCTGCAATTAAGCTTCCTTACCATGGTCAAGTAGTCATTGGCATTAATTAGGAATATGATCCCTAACTCCCCATGTTTCTTAAAATTTTCTCATGGTCG-AGGAATAATTGAC---------TGATGCTTCACC--TTTAAGGATTGTC-AATATTATTCAG---TGTTGGCCCTTACAACTGGGTGATTGGGTCTCACATGACAGTTTAATTCC-----------CTCCAATTTTAACTGCGGCTCCTTCTCTACCTTCCTTATCTTCCTTTTGACTGTGAAGCAAGACTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCAGGGAGATTTGCATTAATTGCTATTCATaaca-tttttccatcactgattatgtgcctaaatggttctgagtactttgtatgtatcaacttgctgaattttgacagcaatc-tgtggactaggtatcactgccactcccatcaaccatgtgagaaaacggagccacaac- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112880458 607 + 159171411 AGCCTTGGCCAGCTACTGTTTACATAATTCCCGAAGTCTCTTCCTTGTTTGTGTTTG-ATAATTTGTCTCTGAATGATAATTGGTCTTTCCCTGAGTTATTTGTTGAACCTTCGGAAAGCCTTT--AAAATTGATTTTATTTGGTATGCAATTAGGCTTCCTTACTATGGTCAAGTAGTCACTGGCATTAATTAGGAATATAATCCCTAACTCCCCATGTTTGTTAAAATTTTCTCTTTGTCA-AGGAATAACTGAA---------GGATGCCTCATG--TTTAAGGATTGTC-AATATTACTCAATATTGTTGACCCTTACAACTGGGTTATTCAGTCTCACATGACAGTTTAATTCC-----------CTCCAATTTTAACTGTGGCTCCTTCTCTACCTTCCTTATCTTCACTTTGACTGTAAAGCAGGGCTATATTCAGCTGGCCAGAAAGGGATGCTTTCT----TGG-GCCTGGGAGATTTGCATTAATTGTTACTGATaaca-tttttccatcactgactgtgtgcctaaatggttccaagtactttgcatgtatcaatttgctgaattttcacggcaatc---tggactaggtatcattgctactcccatcatccatgtgagaaaactgagcctc---- i calJac3.chr5 C 0 C 0 s mm10.chr11 99591408 579 + 122082543 ATCCCTGGCTGGCTGCTGTTTCCCTAATTTCCAAAGTGTCTTCCTTGTTTATGTTTATGTAGTTTTTCTCTAAATGATAATT-GTTTGTTTCTGAGTTACTTGTTCAGACTTCTGAAAGCCCGTAAAAAGCTGATTTTATTTGGTGTTCAATTAGACTTCTTGACTACAGTGAAGTAGTCATTAGCGTTCATTGGAAACATGAGCCTGGATCACCCATATTCACTATAATCTTCCTACCGCCA-ACGACTAATTGAC---------TAATGCTACTCCTATTTAAGGAGAGTCAAAAATTACTCAG---TGTTGACATTTGTAATT-GGTTCTTGAATCTCACATGGAAGTTCAAT------------------ATTTTTGCCTG-------------------------TTTCCTTTGACTGGGATGAAAGG-TGGGTTCAACTGGACAGAAA-AGATGCCTCCTTCTCTGC-ACCTGGGAAATGTGAATGGTTCGTTatcactaatg-attgctgagcacttatcatgtatctagacaactgtctatatcttgtataaatccacttct----ttttcacatcaacc-ttaagggtgggctctactgctgctgtcataattcaggggaagaaactgagccaTTAC- i mm10.chr11 C 0 I 764 s canFam3.chr9 39431582 625 - 61074082 AGGCTTGGCTAGCTATGATTTACATAATTCTCAAAATCTCTTTCTTGTCTGTGTATAAATAATCTGTCTCTGAATAATAATTTCCCTGTTCCTGAGTTATTT-TTCAACCT-CTAAAAGGCTTT-TAAAGTTCATTTTATTTGGTCTACAATTAGTATTCTTTACCACAGTCAAGTAATCATTGGCATTCATTGGCTACACATCCCACAGTCCCTCATATTTGTTAAAATTTGGTCATTGCCCTAAGAATAATGGGCAATGACCAATAATGCCTCATC--TTTAAGGAGTGTC-AGTATTACTCAA---TGTTGATCCTAATAATCGAGCTCTTGGGCCTCACATGACAGTTTAATTCCCAGCAACATGGCCCTGATGTCAACTACTGCCCATT---TATCTTTCTTATCTTCAATTTGACCATGAAACAAAGT--GATCCAGCTGGCCAGAAAGGGATGCTTTTT----GGGTGACTGAGAAATGTGGATGAATTGTTACTGATCACAGtttctggagcact---tgggtgcccaaatggttctgactactttgcctgtatcagttcatttaatttttactgcgatcccatgagccacgcct-atagctactcccatcatccatgtaatgaaactgagcctcaaac i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48055945 7254 - 81552678 I a score=73152.000000 s hg38.chr17_JH159146v1_alt 184909 28 + 278131 aggttgaagtaacttaccctagttcaca s panTro4.chr17 66304051 28 - 82630442 agattgaagtaacttacccaagttcaca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24838316 28 - 73212453 agattgaagtaacttacccaagttcaca i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53169113 28 + 80904711 agattgaagtaacttacccaagttcaca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52733509 28 + 80997621 agattgaagtaacttacccaagttcaca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47736466 28 + 74645514 AGATTGAAGTAACTTACCCAAGTTCACA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10000630 28 - 75148670 agattgaagtaacttacccaagttcaca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112881065 22 + 159171411 ------aagtaacttactcaagttcaca i calJac3.chr5 C 0 C 0 s canFam3.chr9 39432207 28 - 61074082 agatttacatctcttgcctagtttcaca i canFam3.chr9 C 0 I 139 e mm10.chr11 99591987 764 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=225155.000000 s hg38.chr17_JH159146v1_alt 184937 85 + 278131 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaacctctgattccagactaaactcttt-aaacactatAGTCAAttctt----------tctct s panTro4.chr17 66304079 85 - 82630442 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaccctctgattccagactaaactcttt-aaacactatAGTCAAttctt----------tctct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24838344 95 - 73212453 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaccctctgattccagactaaactcttt-aaacactaCAGTCAAttctttctctctttctctct i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53169141 85 + 80904711 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaccctctgattccagactaaactcttt-aaacactatAGTCAAttctt----------tctct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52733537 85 + 80997621 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaccctctgattccagactaaactcttt-aaacactatAGTCAAttctt----------tctct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47736494 85 + 74645514 CTAGTATCTAG------------------------------------------------------TGAATCTGAAATTTGAATCCACATCCTCTGATTCCAGACTAAACTCTTT-AAACACTATAGtcaattctt----------tctct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10000658 84 - 75148670 ctagtatctag------------------------------------------------------tgaatctgaaatttgaatccacaccctctgattccagactaaactcttt-aaacactatAGTCAAttctt----------tctc- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112881087 85 + 159171411 ttaatatctag------------------------------------------------------tgaatctgaagtttgaatccatgccatctgattccagaatAAACTCTTC-AGAAACTATAGTCAAttctt----------ttcct i calJac3.chr5 C 0 C 0 s canFam3.chr9 39432374 140 - 61074082 cgggtgtccaggatcatgccctgggccgaaggcagcgctaaaccgttgagccacctgggctgccctgaatctgagatttgaacccacatcatctgactccagactaaactctttcaaccactatagtcaatactT----------TTTTC i canFam3.chr9 I 139 C 0 e mm10.chr11 99591987 764 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=6652.000000 s hg38.chr17_JH159146v1_alt 185022 10 + 278131 ----ctttctctct s panTro4.chr17 66304164 10 - 82630442 ----ctttctctct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24838439 10 - 73212453 ----ctttctctct i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53169226 10 + 80904711 ----ctttctctct i rheMac3.chr16 C 0 I 164 s macFas5.chr16 52733622 7 + 80997621 ----ctttctc--- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47736579 10 + 74645514 ----ctttctctct i papAnu2.chr16 C 0 C 0 s canFam3.chr9 39432514 10 - 61074082 CAgggtgcct---- i canFam3.chr9 C 0 C 0 e mm10.chr11 99591987 764 + 122082543 I e calJac3.chr5 112881172 0 + 159171411 C e chlSab2.chr16 10000742 0 - 75148670 C e nomLeu3.chr19 48055945 7254 - 81552678 I a score=2175.000000 s hg38.chr17_JH159146v1_alt 185032 19 + 278131 ----gtctttctcccttccttcc s panTro4.chr17 66304174 15 - 82630442 ----gtctttctc----ccttcc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24838449 15 - 73212453 ----gtctttctc----cctttc i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52733629 10 + 80997621 ---------tctc----ccttcc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47736589 11 + 74645514 --------ccctt----ccttcc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10000742 10 - 75148670 ---------tctc----ccttcc i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39432524 19 - 61074082 gggtggctcagtc----ggttaa i canFam3.chr9 C 0 I 72 e mm10.chr11 99591987 764 + 122082543 I e calJac3.chr5 112881172 0 + 159171411 C e rheMac3.chr16 53169236 164 + 80904711 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=25199.000000 s hg38.chr17_JH159146v1_alt 185051 53 + 278131 ttccttccctcctttcttctttctttctttctttctttctttctttct--------ttctt s panTro4.chr17 66304189 48 - 82630442 ttccttccctcttttcttccttc--cctttctttctttctttctttc-----------ctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24838464 53 - 73212453 ttccttccttcattcccttcctt--ccttcctttctttccttctttct------cattctt i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52733639 60 + 80997621 ttccttccttcctt-cttccttcttcttccttttccttccttccttccttccttccttcct i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47736600 38 + 74645514 ttccttccttcctt-cttccttcttcttccttttctttc---------------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10000752 38 - 75148670 ttccttccttcctt-cttccttcttcttccttttctttc---------------------- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39432543 72 - 61074082 I e mm10.chr11 99591987 764 + 122082543 I e calJac3.chr5 112881172 0 + 159171411 C e rheMac3.chr16 53169236 164 + 80904711 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=6368.000000 s hg38.chr17_JH159146v1_alt 185104 45 + 278131 tctttctttccttctttctttctttctttcctttctttctttctt s panTro4.chr17 66304237 22 - 82630442 tctttcttt--ttctttctttctt--------------------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24838517 43 - 73212453 tctttctttccttctttctttctt--ttctttttctttctttctt i ponAbe2.chr17 C 0 I 188 s macFas5.chr16 52733699 24 + 80997621 tccttccttccttccttccttcct--------------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47736638 18 + 74645514 ----tctttctttctttctttc----------------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10000790 19 - 75148670 ----tttctctttcttttctttc---------------------- i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39432615 19 - 61074082 tctgcttctccctctgtct-------------------------- i canFam3.chr9 I 72 C 0 e mm10.chr11 99591987 764 + 122082543 I e calJac3.chr5 112881172 0 + 159171411 C e rheMac3.chr16 53169236 164 + 80904711 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=0.000000 s hg38.chr17_JH159146v1_alt 185149 2 + 278131 tc e ponAbe2.chr17 24838560 188 - 73212453 I e canFam3.chr9 39432634 0 - 61074082 C e mm10.chr11 99591987 764 + 122082543 I e calJac3.chr5 112881172 0 + 159171411 C e chlSab2.chr16 10000809 0 - 75148670 C e papAnu2.chr16 47736656 0 + 74645514 C e macFas5.chr16 52733723 0 + 80997621 C e rheMac3.chr16 53169236 164 + 80904711 I e nomLeu3.chr19 48055945 7254 - 81552678 I e panTro4.chr17 66304259 0 - 82630442 C a score=56463.000000 s hg38.chr17_JH159146v1_alt 185151 96 + 278131 cttccttccttccttccttccttccttccttccttcctttctttctttctttctttctttctttctttctttctttctttctttttcttctttctc----------- s panTro4.chr17 66304259 52 - 82630442 -------------------------------------tttctttctttctttctttctttctttctttc-----ttctttctcct--ttctttctt----------- i panTro4.chr17 C 0 C 0 s macFas5.chr16 52733723 85 + 80997621 ----------tccttccttccttccttccttcctttctttctttctttctttctttctttctttctttctttctttctttctttct-ttctttctt----------- i macFas5.chr16 C 0 I 13 s papAnu2.chr16 47736656 68 + 74645514 ---------------------------tctctctctctctctttctttctttctttttctctctttttctctctttctttctttcc-ttctttctt----------- i papAnu2.chr16 C 0 I 3 s chlSab2.chr16 10000809 68 - 75148670 ---------------------------tctttctttctttctttctttctttctttctttctttctttctttctttctttctttct-ttctttgtc----------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112881172 86 + 159171411 --------cttcctttcttccttctttccttccttccttccttcctttcttcctccctttctttctttcttttgttctttcattct-ttcttttt------------ i calJac3.chr5 C 0 C 0 s canFam3.chr9 39432634 93 - 61074082 -------------ctgccctcctccctgcttgtgatctctccctctctctctctctctttctctctctctcACACACATGCACACA-CTCTCTCTCTTAAATAAATA i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24838560 188 - 73212453 I e mm10.chr11 99591987 764 + 122082543 I e rheMac3.chr16 53169236 164 + 80904711 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=92401.000000 s hg38.chr17_JH159146v1_alt 185247 75 + 278131 ctttctttctttc----ctttcttctttttttATGTAAAAAGTCATTCTAAGGAAATTCCAATGGTGAAAGCAAGCCGT s panTro4.chr17 66304311 75 - 82630442 cttcctttctttc----ctttcttctttTTTTATGTAAGCAGTCATTCTAAGGAAAATCCAAGGGTGAAAGCAAGCCAT i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53169400 76 + 80904711 CTTTCTTTCTTTC---TCTTTCTTCTTTTTTTATGTAAGCAGTCGTTTGAAGGAAAATCCAAGTGTGAAAGCAAGATAT i rheMac3.chr16 I 164 C 0 s macFas5.chr16 52733821 76 + 80997621 ctttctttctttc---tctttcttctttttttATGTAAGCAGTCGTTTGAAGGAAAATCCAAGTGTGAAAGCAAGATAT i macFas5.chr16 I 13 C 0 s papAnu2.chr16 47736727 62 + 74645514 -----------------ctttcttctttttttatgtaaGCAGTCATTCGAAGGAAAATCCAAGTGTGAAAGCAAGATGT i papAnu2.chr16 I 3 C 0 s chlSab2.chr16 10000877 59 - 75148670 --------------------tcttctttttttATGTAAGCAGTCGTTAGAAGGAAAATCCAAGTGTGAAAGCAAGTTGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112881258 53 + 159171411 --------------------------tttttACTGTAAGCAGTCATTCTAAGGAAATTCCAAGGGTGAGAGCAAGATGT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39432727 72 - 61074082 ----AAATCTTAAAAAATGCTCTGTTTTCCAAATGTAAGCAATTGTTGTAGAGAAAATCAAAGGGTAAG---AAGATGT i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24838560 188 - 73212453 I e mm10.chr11 99591987 764 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=1741086.000000 s hg38.chr17_JH159146v1_alt 185322 659 + 278131 AAAAATTTGCTTCCTTTCTTACGGACTTTTTTGAGAGTAA----AAGGAAGGAAGGGAGAGCTTAGGGTAAGTAATAACACAGTTTACTACAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACAGTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTT-----CTTGTGACTTTGTCTCATCTTTTATCTTAGGATATTCTATAGATTTAGATTTTTT--AACTGCAT-AAAATTATAGTTTTTAACATATTAATACTGGAGTATGTGATTTACTACAGAGTGTTAGATCGGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCCAGTGAACTGGAAAGTTTATATAATTTGAATGAGACAGCTGATGACGGTGAATATAAAGGTTTTGTTTAGATGCAATAAAAGGTGACCAGGCCTCCATGGAGTATGGGTTC-ATTACTGAGAAATGCAAGTTACGATGCTACTCTTGGATTTTGAACCAGAACACCAAGTGGT-AGTTCTGCTTCTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTGAGTCAGAATTAAGACATATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATATGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTACATCA s panTro4.chr17 66304386 659 - 82630442 AAAAATTTGCTTCCTTTCTTACAGACTTTTTTGAGAGCAA----AAGGAAGGAAAGGAGAGCTTAGGGTAAGTAATAACACTGTTTACTAGAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTC-----CTTGTGACTTTGTCTCATCTTTTATCTTAGGATATTCTATAGATTTAGATTTTTT--AACTGCAT-AAAATTATACTTTTTAACATATTAATACTGGAGTATGTGATTTACTACAGAGTGTTAGATCGGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCCAGTGAACTGGAAAGTTTATATAATTTGAATGAGACAGCTGATGACGGTGAATATAAAGGTTTTGTTTAGATGCAATAAAAGGTGACCAGGCCTCCATGGAGTATGGGTTC-ATTACAGAGAAATGCAAGTTACGATGCTACTCTTGGATTTTGAACCAGAACACCAAGTGGT-AGTTCTGCTTTTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTGAGTCAGAATTAAGACATATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATATGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTACATCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24838748 659 - 73212453 AAAAATTTGCTTCCTTTCTTACAGACTTTTTTGAGAGTAA----AAGGAAGGAAGGGAGAGCTTAGGGTAAGTAATAACACTGTATACTAGAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTC-----CTTGTGACTTTGTCTCGTCTTTTATCTTAGGATATTCTACAGATTTAGATGTTTT--AACTGCAT-AAAATTATACTTTTTAACATATTAATGCTGGAGTATGTGATTTACTACAGAGTGTTAGATCAGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCCAGTGAACTGGAAAGTTTATATAATTTGAATGAGACAGCTGATGATGGTGAATATAAAGGTTTTGTTTAGATGCAATAAAAGGTGACCAGGCCTCCATGGAGTATGGATTC-ATTACAGAGAAATGCAAGTTACAATGCTACTCTTGGATTTTGAACCAGAACACCAAGTGGT-AGTTCTGCTTCTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTCAGTCAGAATTAAGACATATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATGTGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTACATCA i ponAbe2.chr17 I 188 C 0 s rheMac3.chr16 53169476 665 + 80904711 AAAAATGTGCTTCCTTTCTTATAGACTTTTTTCAGAGTAAAAGGAAGGAAGGAAGGGGGAACTTAGGGTAAGTAATAACACTGTTTATTAGAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTCCTTGACTTGTGACTTTGTCTCATCTTTTATCTTAGGATATTCTATAGATTTAGATTTTTT--GACTGCAT-AAAATTATAC-TTTTAACATATTAATACTGGAGTATGTGATTTACTACAGTGTGTTAGATCTGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCTAGTGAACTGGAAAGTTTATATAATTTGAATGAGGCAACTGATGATGGTGAAGATAAACGTTTTGTTTAGATGCAATAAAAGGTGATGAGGCCTCCATGGAGTATGAGCTC-ATTGCAGAGAAATGCAAGTTACAGTGCTACTCTTGGGTTTTGAACCAGAACACCAAATGGT-AGTTCCACTTCTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTGAGTCACAATTAAGTC--ATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATGTGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTATATCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52733897 665 + 80997621 AAAAATGTGCTTCCTTTCTTATAGACTTTTTTTAGAGTAAAAGGAAGGAAGGAAGGGGGAACTTAGGGTAAGTAATAACACTGTTTATTAGAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTCCTTGACTTGTGACTTTGTCTCATCTTTTATCTTAGGATATTCTATAGATTTAGATTTTTT--GACTGCAT-AAAATTATAC-TTTTAACATATTAATACTGGAGTATGTGATTTACTACAGTGTGTTAGATCTGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCTAGTGAACTGGAAAGTTTATATAATTTGAATGAGGCAACTGATGATGGTGAAGATAAACGTTTTGTTTAGATGCAATAAAAGGTGATGAGGCCTCCATGGAGTATGAGCTC-ATTGCAGAGAAATGCAAGTTACAGTGCTACTCTTGGGTTTTGAACCAGAACACCAAATGGT-AGTTCCACTTCTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTGAGTCACAATTAAGTC--ATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATGTGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTATATCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47736789 661 + 74645514 AAAAATGTGCTTCCTTTCTTATAGACTTTTTTGAgagtaa----aaggaaagaagggggaaCTTAGGGTAAGTAATAACACTGTTTACTAGAGCCATTCctagagattttatttatttattaacagcaTAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTCCTTGACTTGTGACTTTGTCTCAtcttttatcttaggatattctATAGATTTAGATTTTTT--GACTgcat-aaaattatac-ttttaacatATTAATACTGGAGTATGTGATTTACTACAGTGTGTTAGATCTGCTGTATGCAGTTTCTTATAGATATTAGAGACTAATCTAGTGAACTGGaaagtttatataatttgaatGAGGCAACTGATGATGGTGAACATAAACGTTTTGTTTAGATGCAATAAAAGGTGATGAGGCCTCCATGGAGTATGAGCTC-ATtgcagagaaatgcaagttacaGTGCTACTCTTGGGTTTTGAACCAGAACACCAAATGGT-AGTTCCGCTTCTCTAGAAATGACAGCTTTGAGTTTACATCATAACTCTTTCTGAGTCAGAATTAGGTC--ATTTTCAAATTCCACATCAAA-TTTGGTTTAAAAGATGTGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTATATCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10000936 661 - 75148670 AAAAATGTGCTTCCTTTCTTATAGACTTTTTTGAGAGTAA----AAGGAAGGAAGGGGGAACATAGGGTAAGTAATAACACTGTTTACTAGAGCCATTCCTAGAGATTTTATTTATTTATTAACAGCATAATAAGCACACTTCAAGAAAATCTTAAGTGCTAAAAAAG---TTAACCTCCTTGACTTGTGACTTTGTCTCATCTTTTATCTTAGGATATTCTATAGATTTAGATTTTTT--GACTGCAT-AAAATTATAC-TTTTAACATATTAATACTGGAGTATGGGATTTACTACAGTGTGTTAGATCTGCTGTATGCAGTTTATTATAGATATTAGAGACTAATCTAGTGAACTGGAAAGTTTATATAATTTGAATGAGGCAACTGATGATGGTGAAGATAAACGTTTTGTTTAGATGCAATAAAAGGTGATGAGGCCTCCATGGAGTATGAGCTC-ATTGCAGAGAAATGCAAGTTACAGTGCTACTCTTGGGTTTTGAACCAGAACACCAAATGGT-AGTTCCGCTTCTCTAGAAATGACAGCTTTGAGTTTACGTCATAACTCTTTCTGAGTCAGAATTAAGTC--ATTTTCAAATCCCACATCAAA-TTTGGTTTAAAAGATGTGATTCTTTGTAAATTCCTTG---CTTCTTCTTAAGCAAAGCTATATCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112881311 658 + 159171411 AAAACTTGGCTTCCTTACTTACAGACTTTTTTGAGAGTAA----GAGGAAGGAAGGGAGAGCTTAGGGTAAGCAACGACACTGTTCACTAGAGACATTCCTGGAGATATTAT---TTTTTTGACAGCATAATAAAGACACTTCAAGAAAATATCAAGTGCTAAAAAAG---TTAACTGACTTGACTTGTAACTTTGCTTCATCTTTTATCTTAGGATGTTCTAAAGATGTAGATGTTTTTAAACTGCAT-AAATTTATAC-TTTTAACTTATCAATACTGGAGTATGTGATTTACT---GGGTGTTCAATCTGCTGTGTGCAGTTTATTGTAGATGTAAGAGACTAATCTAGTTAACTGGAAAGTTTACATAATTTGAATGAGACAGCTGGTGATGGTGAAGATAAAGGTTTTGTTTAGATGCAGTAAAAGGTGGCCAGGCTTCCATGGAGTATGGGCTCTGTTACAGAGAAATACAAGCTACAATGCTACTCTTGGGTTTTGAACCAGAGCACCAAGTGGT-AGTTCTGCTCCTCTAGAAATGACAGCTTTGAGTTTACATCATAAATCTTTCTGAGTCAGAACTAAGACATATTTTCAAATCCCACATCAAA-TTTGGTTTAGAAGA--TGATTCTTTGTGAATTCCTTG---CTTCTTCTTAAGCAAAGCTGCATCA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39432799 605 - 61074082 AAAAATGTG---GCCCACTTTCAAACTTTTTTTAGAGTCA----AAGGAAGAAAGGCAGCATTTAGGGTAAGTAACAACACA----ATTAGAGGCTTCTCTGaaaattttat---ttttttaactatataataaGCACATTTCAAGAAAATCTCAAGTGCTAAAAAGGTTATTAACCTATTTGACTTGTGACTTTATCTAAATTTTGATATTAGAATGTCCTATAGTTTAAATGTCCTT--AACTGCATAAAAATCACAC---TCAGTGTATTAACACTGGAGCATGT-------------GTGTTAGATCTGCAATATGCAGTTTACTGTACATATTAGAAACTAGTCCAACTCACT-GAAAGCTAATATAATTGAA--------------------------------TTTGTGCAGGTGCAATGAAAGGTGACCTGGTCTCTGTTGAGTATGGATTCTATTATAGGGAAATGAATTTTAAAATGCTACTTATACAGGTTGAATCAGAATACCAGGTGTTCAGTCCTGCTTCTCCAGAAATGACAGTTTTGAGTTAAGATCATAATTCTTCCCAAGTCAAAATTAAGAC--ACTTTCAAATCCCACATCAAATTTTGAGTTAAAAGGTA--------TGTGAATTTTTTGCCTCCTCTCCTTAAGCAAATCTACATCA i canFam3.chr9 C 0 C 0 e mm10.chr11 99591987 764 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=829729.000000 s hg38.chr17_JH159146v1_alt 185981 277 + 278131 CAGATTCTTTGATTAGCTAATA-TTTTTTATGTTGGATGCTTGAAATACGTGGGTGTGTCATGACAACAATCTCGGGAGCTATTTAATTC------AGATCTAAATTTAGCAGAATCTTTGATACTAAACAGATGTATCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACCTGAAATACATTATTGATAAGAGCACTGGAGACAGTGGCGTTGCATATCAGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACTATTTTCAACA--------------TCT-TCCTCAATG----------------------------------CAAAATT s panTro4.chr17 66305045 277 - 82630442 CAGATTCTTTGATTAGCTAATA-TTTTTTATGTTGGATGCTTGAAATACGTGGATGTGTCATGACAACAATCTCAGGAGCTATTTAATTC------AGATCTAAATTTAGCAGAATCTTTGATACTAAACAGATGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATACATTATTGATAAGAGCACTGGAGACAGTGGCGTTGCATATCAGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACTATTTTCAACA--------------TCT-TCCTCAATG----------------------------------CAAAATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24839407 277 - 73212453 CAGATTCTTTGATTAGCTAATA-TTTTTTATGTTGGATGCTTGAAATACGTGGATGTGTCATGACAACAACTTCAGGAGCTATTTAATTC------AGATCTAAATTTAGCAGAATCTTTGATACTAAACAGATGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATACATTATTGATAAGAGCACTGGAGACAGTGGCGTTTCATATCAGTTCTCTCTTTCTGGGCTTTTCTACTGTGGCACTATTTTCAACA--------------TCT-TCCTCAATG----------------------------------CAAAATT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53170141 277 + 80904711 CGGATTCTTTGATTAGCTAATA-TTTTTTATGTTGGATGTTTGAAATATGTAGATGTGTCATGACAAGAATCTCAGGAGCTATTTAATTC------AGATCTAAACTTAGCAGAATCTTTGATACTAAACAGATGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATATATTATTGATAAGAGCACTGGAGACAGTGGCGTTGCATATCGGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACCATTTTCAACA--------------TCT-TCCTCAGTG----------------------------------CAAAATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52734562 277 + 80997621 CGGATTCTTTGATTAGCTAATA-TTTTTTATGTTGGATGTTTGAAATATGTAGATGTGTCATGACAAGAATCTCAGGAGCTATTTAATTC------AGATCTAAACTTAGCAGAATCTTTGATACTAAACAGATGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATATATTATTGATAAGAGCACTGGAGACAGTGGCGTTGCATATCGGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACCATTTTCAACA--------------TCT-TCCTCAGTG----------------------------------CAAAATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47737450 278 + 74645514 CAGAATCTTTGATTAGCTAGTAtttttttATGTTGGATGTTTGAAATATGTGGATGTGTCATGACAAGAATCTCAGGAGCTATTTAATTC------AGATCTAAACTTAGCAGAATCTTTGATACTAAACAGATGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATACATTATTGATAAGAGCACTGGAGACAGTGGTGTTGCATATCGGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACCATTTTCAACA--------------TCT-TCCTCAGTG----------------------------------CAAAATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10001597 277 - 75148670 CAGATTCTTTGATTAGCTAGTA-TTTTTTATGTTGGAAGTTTGAAATATGTGGATGTGTCATGACAAGAATCTCAGGAGCTATTTAATTC------AGATCTAAACTTAGCAGAATCTTTGATACTAAACAGTTGTGTCTCCTTTTGCAAAAGGCTCAGATATCTGAGGACTTGAAATACATTATTGATAAGAGCACTGGAGACAGTGGCGTTGCATATCGGTTCTCCCTTTCTGGGCTTTTCTACTGTGGCACCATTTTCAACA--------------TCT-TCCTCAGTG----------------------------------CAAAATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112881969 270 + 159171411 CAGATTCTTTGATTAGCTAATT-TGTTTTCTATTGGATGCTTGAAATACGCGGATGTGTCAGGATAACAATCTCAGGAGCTATTTAATTC------AGATCTAAATTTAGCAGAATGCTTGACACTAAAAAGATGTGTCTGCCTTTGCAAAAGGCTTAGTTATCT-------TGAAATATGTTATTGACAAGGGCACTGGAGATGGGGGTGTTGCATATCAGTTCTCCCTTTCTGGGCTTTTTTACTGTGACACTGTTTTCAACA--------------TCT-TCCTCAGTG----------------------------------TAAAATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99592751 310 + 122082543 cagcTTCTTTGGTTGGGTAT---TTTTTCACTTTAAGTGCTTGAAATATGCAG--GTGGCCTGATAACCATCTCAGGGACTATTTCATTCATGATGAAATTTGAATTCAGCAGGATGCTTGATACTACAGATACTGAT----------------CTCGGGTGTTTAAGATGTTGCAGTGCATTGTTGATAAAAGCCCTGGAGATAATGACATTATGTGTGGCATTATTGTTTCTGGACTTTTCTACT-TGGCACCGTTTTTAACAGTACAAGATTTAAGTCT-ACTTTCATGATTATGGACTTCGGTAATTACTAACAATAAAACACCAAGCT i mm10.chr11 I 764 C 0 s canFam3.chr9 39433404 276 - 61074082 CAGATTCTTTGATTAGCTAAT--TTTTCCACCTTGGATGTTTGGAATATGTAGGTTTGTCACCATTACAATCTCAGGAGCTATTTAATTC------ATATTTAAATTCAGTAGAATCTCTGATACTAAAAACATTTATCTCCCCTTGCAAACAATTCAGATGTTTGAGGAGTTGAAATAC-CTCCTGATAAAGGCACTGGAGATAGTAATGTTGTTGGTTAAATCTCTATTTCTGTACTTTTCTGGTGTGGCACTGTTTTTAGCA--------------TCTAACATTGGTG----------------------------------CAAAACT i canFam3.chr9 C 0 I 477 e nomLeu3.chr19 48055945 7254 - 81552678 I a score=26100.000000 s hg38.chr17_JH159146v1_alt 186258 7 + 278131 TAAGGTA s panTro4.chr17 66305322 7 - 82630442 TAAGGTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24839684 7 - 73212453 TAAGGTA i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53170418 7 + 80904711 TAAGGTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52734839 7 + 80997621 TAAGGTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47737728 7 + 74645514 TAAGGTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10001874 7 - 75148670 TAAGGTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112882239 7 + 159171411 TAAGATA i calJac3.chr5 C 0 I 2 s mm10.chr11 99593061 7 + 122082543 CAAggtg i mm10.chr11 C 0 I 155 s canFam3.chr9 39434157 7 - 61074082 TAAGGTA i canFam3.chr9 I 477 C 0 e nomLeu3.chr19 48055945 7254 - 81552678 I a score=346291.000000 s hg38.chr17_JH159146v1_alt 186265 114 + 278131 TGACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAACGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTAAATTAAGAA----------AAtgaaatttattttatttcac--tttaca s panTro4.chr17 66305329 114 - 82630442 TGACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAACGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTACATTAAGAA----------AATGAAATTTATTttatttcac--tttaca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24839691 114 - 73212453 TGACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAACGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTAAATTAAGAA----------AATGAAATTTATTttatttcac--tttaca i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53170425 114 + 80904711 TAACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAATGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTAAATTAAGGA----------AATGAAATTTATAttatttcac--tttaca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52734846 114 + 80997621 TAACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAATGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTAAATTAAGGA----------AATGAAATTTATAttatttcac--tttaca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47737735 114 + 74645514 TAACACTT---ACTTGAGAATTTGACTCTTGTGCCACAGAATGAAGACTAATCTAAACATTCCCTTACCTCCTCTAAGTAAATTAAGGA----------Aatgaaatttgtattatttcac--tttaca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10001881 114 - 75148670 TAACACTT---ACTTGAGAATTTGACTCCTGTGCCACAGAATGAAGACTAATCTGAACATTCCCTTACCTCCTCTAAGTAAATTAAGGA----------AATGAAATTTATAttatttcac--tttaca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112882248 113 + 159171411 TTGCACTT---ACTTGAGAATTTGACTCCTATGCCACAGAATGAAGACTAATCCG-ACATTCCCTTACCTCCTCTAAGTAAATCCAGAA----------AATGAAATTTATTttatttcac--tttaca i calJac3.chr5 I 2 C 0 s mm10.chr11 99593223 127 + 122082543 TGTCACTCAAAATTTGAGAGCTCTCCTTCTCTGTCACAGGGTGAAGCCGAGTCTGAACATTCCCTCACCAGCCTTGAATAAATCAAGAACACCGGATGTAACCAGACTTCTTTTTTTTTTC--TTTCTA i mm10.chr11 I 155 I 164 s canFam3.chr9 39434164 110 - 61074082 TGACACTTAAAATTTGAGAATTCTACTCCTCTGCCACAGA-------CAAATCTGAACATTCCCTTACCTTCCC-aaataaattaagaa----------aataaaa-ttattttCTCctaccgcttaaa i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48055945 7254 - 81552678 I a score=204289.000000 s hg38.chr17_JH159146v1_alt 186379 99 + 278131 --------------------------------------------ttatatccttcaagtt---------taggtatgttgtaatatgtga---ccgaatttcctgcttttt-atagactc-------aatagtattccgttgtgtgtatataccacatttctt- s panTro4.chr17 66305443 99 - 82630442 --------------------------------------------taatatccttcaagtt---------taggtatgttgtaatatgtga---ccgaatttcctgctttgt-atagactc-------aatagtattccgttgtgtgtatataccacatttCTT- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24839805 100 - 73212453 --------------------------------------------taatatccttcaagtt---------taggtgtgttgtaatatgtga---ccgaatttcctgctttttaatagactc-------aatagtattccattgtatgtatataccacatttCTT- i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53170539 99 + 80904711 --------------------------------------------taatatcctccaagtt---------tagatatgttgtaatatgtga---ccgaatttccttcttttt-acagactc-------aatagtattccgttgtgtgtatataccacatttctt- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52734960 99 + 80997621 --------------------------------------------taatatcctccaagtt---------tagatatgttgtaatatgtga---ccgaatttccttcttttt-acagactc-------aatagtattccgttgtgtgtatataccacatttctt- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47737849 99 + 74645514 --------------------------------------------taatATCCTCCAAGTT---------TAGATATGTTGTAATATGTGA---ccgaatttccttcttttt-acagACTC-------AGTAGTATTCcgttgtgtgtatataccacatttctt- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10001995 99 - 75148670 --------------------------------------------taatatcctccaagtt---------tagatatgttgtaatatgtga---ccgaatttccttctttta-acagactc-------aatagtattccgttgtgtgtatataccacatttctt- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112882361 99 + 159171411 --------------------------------------------taatgtcctccaagct---------taggcatgttgtagtgtgtga---cagaattttcttcttttt-atagagtg-------aatagtattccattgtgtgtacatatcacttttgtt- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39434274 161 - 61074082 tccatttcttcttgattggttctcatacaaatagagTAAGAAGTTATAATCATTCATGATGTTTCTGTGTAGATTTTATGTCCTGTTTAAATGCTGGATATC--TCTATCT-GTGGTCTTCTTTGAGAAAAGAATGCCAGTCATTTTACATTTAAAACTATTTT i canFam3.chr9 C 0 C 0 e mm10.chr11 99593350 164 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=285909.000000 s hg38.chr17_JH159146v1_alt 186478 98 + 278131 attACTGTGCTGATTCCCTCTGGCATTCATTACTTCATTTAAGTGATGGGCTGTAGACCATTCCAGTACCATAAGAAGAAAG--------------AATGTGTTTGTCTGTT s panTro4.chr17 66305542 98 - 82630442 ATTACTGTGCTGATTCCCTCTGGCTTTCATTACTTCATTTAAGTGATGGGCTCTAGACCATTCCAGTACCATAAGAAGAAAG--------------AATGTGTTTGTCTGTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24839905 98 - 73212453 ATTACTGTGCTGATTCCCTCTGGCTTTCATTGCTTCATTTAAGTGATGGGCTCCAGACCATTCCACTACCATAAGAAGAAAG--------------AATGTGTTTGTCTGTT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53170638 98 + 80904711 attcctgtgcttattCCCTCTGGTTTTCATTACTTCATTTAAGTGATGGGTTCCAGACCATTCCAGTACCATAAGAAGAACG--------------AATATGTTTGTCTATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52735059 98 + 80997621 attcctgtgcttattCCCTCTGGTTTTCATTACTTCATTTAAGTGATGGATTCCAGACCATTCCAGTACCATAAGAAGAACG--------------AATATGTTTGTCTATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47737948 98 + 74645514 aTTCCTGTGCTTATTCCCTCTGGTTTTCATTACTTCATTTAAGTGATGGGTTCCAGACCATTCCAGTACCATAAGAAGAAAG--------------AATATGTTTGTCTATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10002094 98 - 75148670 attcctgtgcttattCCCTCTGGTTTTCATTACTTCATTTAAGTGATGGGTTCCAGACCATTCCAGTACCATAAGAAGAAAG--------------AATATGTTTGTCTATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112882460 98 + 159171411 ACTACTGTGGTTATTCCCTCTGGCTTTTATTACTTCATTTAAGTTCTGGGCTCCAGACCATTCCAGTACCATATGAAGAAAG--------------AGTATGTTTGTCTGTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99593514 105 + 122082543 ATTATCTTTCTTATTCTCTTCAGATTCCACTACATCATCTTGG----AGGGCACAGACCACACCATT---ATATGAACAAGGTACTTTTTTTTAGCTATTTGTTTGTTTTTG i mm10.chr11 I 164 C 0 s canFam3.chr9 39434435 97 - 61074082 ATTACTTTGCTTATTCTCTTTGGTTTTCATTACTTCATTTAAGTGATGGGGCCCAGA-CACAGTAGTACCAAAAGAAGAAAG--------------GATGTGTTTGTTTGTT i canFam3.chr9 C 0 I 216 e nomLeu3.chr19 48055945 7254 - 81552678 I a score=916919.000000 s hg38.chr17_JH159146v1_alt 186576 344 + 278131 ATTC-CTGAACGT--GGCTTTGGTTTAACACAGACACTAATGTTTGAAATTATTTTTCTTTAAGATATCATGGTTCTGGTTTTCTAGTTACAAGTTCTGGGGATTCTCCCAATTTCTTCATCTCCGTTTTACTAGTTCTCTAATTCGGTTGTGACTGCCTTACTTAGATTCTCGAGAAATAAAAC---ATGATTGATGTACCAGTCAAATGAATACAACATTCCTATGTAGGGCTTCTGTGCTTCTGC-TCTGGGCTTCCATCCTAGTAATCTAGACCAGATAACACATAAACTTCAAGGACCTCCTCTTACTACCAACTTTTATCCTAAGCCAAGTCACAAGATCTATCT s panTro4.chr17 66305640 344 - 82630442 ATTC-CTGAATGT--GGCTTTGGTTTAACACAGATACTAATGTTTGAAATTATTTTTCTTTAAGATATCATGGTTCTGGTTTTCTAGTTACAAGTTTTGGGGATTCTCCCAATTTCTTCATCTCCATTTTACTTGTTCTCTAATTCAGTTGTGACTGCCTTAGTTAGATTCTCGAGAAATAAAAC---ATGATTGATGTACCAGTCAAATGAATACAACATTCCTATGTAGGGCTTCTGTGCTTCTGC-TCTGGGCTTCCATCCTAGTAATCTAGACCAGATAACACATAAACTTCAAGGACCTCCTCTTACTACCAACTTTTATCCTAAGCCAAGTCACAAGATCTATCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24840003 346 - 73212453 ATTC-CTGAACGCTGGACTTCGGTTTAACACAGATACTAATGTTTGAAATTATTTTTCTTTAAGATATCATGGTTCTGGTTTTCTAGTTACAAGTTCTGGGGATTCTCCCAATTTCTTCATCTCCATTTTACTAGTTCTCTAATTCAGTTGTGACTGCCTTACTTAGATTCTCGAGAAATAAAAC---ATGATTGATGTACCAGTCAAATGAATACAACATTCCTATGTAGGGCTTCTGTGCTTCTGC-TCTGGCCTTCCATCTTAGTAATCTAGACCAGATAACACATAAACTTCAAGGACCTCCTCTTACCACCAACTTTTATCCTACGCCAAGTCACAAGATCTATCT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53170736 345 + 80904711 ATTC-TTGAACATTGGACTTTGGCTTAACACAGATACTAATGTTTGAAATTATTTTCACTTAAGATATCATGGTTCTGATTTT-TAGTTACAAGTTCTGGGGATTCTTCCAATTTCTTCATCTCCATTTTACTAGTTCTCTAATTCAGTTGTGACTGCCTTACTTAGATTCTCAAGAAATAAAGC---ATGATTGATGTACCAGTCAAATGAATACAGCATTCCTACGTAGGGCTTCTGTGCTTCTGC-TCTGGGCTTCCAGCCTAGTAATCTAGACCGGATAACACATAAACTTCAAGGACCTTGTCTTACCCCCAACTTTTATCTTAAGCCAAGTCACAAGTTCTATCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52735157 345 + 80997621 ATTC-TTGAACATTGGACTTTGGCTTAACACAGATACTAATGTTTGAAATTATTTTCACTTAAGATATCATGGTTCTGATTTT-TAGTTACGAGTTCTGGGGATTCTTCCAATTTCTTCATCTCCATTTTACTAGTTCTCTAATTCAGTTGTGACTGCCTTACTTAGATTCTCAAGAAATAAAGC---ATGATTGATGTACCAGTCAAATGAATACAGCATTCCTACGTAGGGCTTCTGTGCTTCTGC-TCTGGGCTTCCAGCCTAGTAATCTAGACCGGATAACACATAAACTTCAAGGACCTTGTCTTACCCCCAACTTTTATCTTAAGCCAAGTCACAAGTTCTATCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47738046 345 + 74645514 ATTC-TTGAACATTGGACTTTGGCTTAACACAGATActaatgtttgaaaatattttcacttaagATATCATGGTTCTGATTTT-TAGTTACAAGTTCTGGGGATTCTTCCAATTTCTTCATCTCCATTTTACTAGTTCTCTAATTCAGTTGTGACTGCCTTACTTAGATTCTCAAGAAATAAAGC---ATGGTTGATGTACCAGTCAAATGAATACAGCATTCCTACGTAGAGCTTCTGTGCTTCTGC-TCTGGGCTTCCAGCCTAGTAATCTAGACCGGATAACACATAAACTTCAAGGACCTCGTCTTACCCCCAACTTTTATCTTAAGCCAAGTCACAAGATCTATCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10002192 345 - 75148670 ATTC-TTGAACATTGGACTTTGGCTTAACACAGATACTAATGTTTGAAATTATTTTCACTTAAGATATCATGGTTCTGATTTT-TAGTTACAAGTTCTGGGGATTCTTCCAATTTCTTCATCTCCATTTTACTAGTTCTCTAATTCAGTTGTGACTGCCTTACTTAGATTCTCAAGAAATAAAGC---ATGATTGATGTACCAGTCAAATGAATACAGCATTCCTACGTAGGGCTTCTGTGCTTCTGC-TCTGGGCTTCCAGCCTAGTAATCTAGACCGGATAACACATAAACTTCAAGGACCTCATCTTACCCCCAACTTTTATCTTAGGCCAAGTCACAAGGTCTATCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112882558 345 + 159171411 ATTC-TTGAACATTGTACTTTTGTTTAACACAGATACTAATGTTTGAAATTATTTTTCTTTAAGATATCATGGTTCTGATTTCCTAGTTACAAGTTCTGGGGGTTCTCCCAATATCTTCATCTCCATTTTACTAGTTCTCTAATTCAGCTGTGACTGCCTTACTTACATTCTTGAGAAATAAAAT---AT-ATTGATGTACCAGTCAAATGAATACAGCATTCCTATGTAGGGCTTCTCTTCTTCTGC-TCTGGGCTTCCATCCTAGTGATCTAGAATGGACAATACATAAACTTCAAGGACCTCCTCTTATCTCCAATGTTTATCTTAAGCCAAGTCACATGATCTATCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99593619 325 + 122082543 TTTCTTTTAACTTTGACTCTCTGTCTAAGAGTG-TCCTAATGTTTTGAGTGGTTTCTGTTTAAGATGGCACAGTCCTATTTCG-GAGT-----GTTCTGG-----------CTTTCTTCATGTTCATTTCACCAGGACTCTAAGCCAGTC-TGATT-------TTAGATCTCTGAAGGATGTGGCTTGGTGGTTGATACACGAGCCACATGAGCACAGCATCCTTGCTTAGGGCATCTGTGCTCCTGTGTTTTGTAATTCGTCCCAGTGACCTCAATTGGGCAACGAATAAGCCTCAAGGACTTCCTTGCATCCCAGCTTTCTAGCCTTAATCAAGCAATGAGGCCTTCCT i mm10.chr11 C 0 I 122 s canFam3.chr9 39434748 242 - 61074082 atta-ttGAATGTTTACCTTCTGTTT---ATAGATACTTATATATTGAGTTATTTTTCTTTAAGAGATCAAGGTTCTGAGTTTCTTATTGTAAATTTTGGGGCTTCTCTCAATTCCTTAAAGTCCATTTTACTAGTTCTCTAATTCAGTTGCCTCTGCCTTACT----TTCCTGAGTGATAAGAT---ATGGTTGATATGCCAACCAGTTGAACA----------------------------------TC-------------------------------------------------------------CCCCATTTTTTATTCTATATCAAGTAATAAGATCTT--- i canFam3.chr9 I 216 C 0 e nomLeu3.chr19 48055945 7254 - 81552678 I a score=1122888.000000 s hg38.chr17_JH159146v1_alt 186920 413 + 278131 CTTCCCTCCTGAATGCCAA----CCAGGA---------------TTTTTTGG--------------------GGTGCTTCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCCAACCTAAACCCTCTCA----------GAGACAACAGAGCTCTAAATGAGGGGAATAAAATGTTGACTACATTGTagggccattgtgtatagatgtacaggtcgcgccctgatg--------tgtggctctgtccactcagaggaaggagcatattatttcttacatcaa---g---ctggaggctcaacaaactgtgcactcctctgtctgtatcttctccaaagtggtg--ccttttcctaattcttttaaagttgtgctagcagaggtcctgTTCTTTTGAT----tttttaaaatggaggt---taaattcacataacctacaattaaccattttaaagtgtataattgagtgacatatagtatattt s panTro4.chr17 66305984 420 - 82630442 CTTCCCTCCTGAATGCCAA----CCAGGC---------------TTTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAAGTACATCCAACCTAAACCCTCTCA----------GAGACAACAGAGCTCTAAATGAGGGGAATAAAATGTTGACTACATCGTagggccattgtgtatagatgtacaggtcgcgccctgatgtgtggct-tgtggctctgtccactcagaggaaggagcatattatttcttacatcaa---g---ctggaggctcaacaaactgtgcacccccctgtctgtatcttctccaaagtggtg--ccttttcctaattcttttaaagttgtgctagcagaggtcctATTCTTTTGAT----tttttaaaatggaggt---taaattcacataacctacaattaaccattttaaagtgtataattgagtgacatatagtatattt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24840349 420 - 73212453 CTTTCCTCCTGAATGCCAA----CCAGGC---------------TTTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCCAACCTAAACCCTCTCA----------GAGACAACAGAGCTCTAAATAAGGGGAATAAAATGTTGAATACATTGTagggccattgtgtatggatgtacaggtcgcgccctgatgtgtggct-tgtggttctgtccactcagaggaaggagcatattatttcttacatcaa---g---ctggaggctcaacaaactgtgcacccctctgtctggatcttctccaaagtggtg--ccttttcctaattcttttaaagttgtgctagcagaggtcctgTTCTTTTGAT----tttttaaaatggaggt---taaattcacataacctacaattaaccattttaaagtgtataattgagtgacatatagtatattt i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53171081 420 + 80904711 CTTCCCTCCTGAATGCCAA----CCAGGC----------------TTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCTAACCTAAACCCTCTCA----------GCGACAACAGAACTCTAAATGAGGGGAATAAAATGTTGACCACATTGcagggccattgtgtatagatgtacaggtcgtgccctgatgtggggctctgtggctctgtctactcagaggaaggagcatattatttcttacatcaa---g---ctggaggctcgacaagctgtacacccctctgtctgtatcttccccaaagtggta--ccttttcctaattcctgtaaagttgtgctagcagaggtcctgTTCTTTTGAT----tttttaaaattgaggt---gaaattcacataacctacaattaaccattttaaagtgtgtaactgagtgacgtatagtatgttc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52735502 420 + 80997621 CTTCCCTCCTGAATGCCAA----CCAGGC----------------TTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCTAACCTAAACCCTCTCA----------GCGACAACAGAACTCTAAATGAGGGGAATAAAATGTTGACCACATTGcagggccattgtgtatagatgtacaggtcgtgccctgatgtggggctctgtggctctgtctactcagaggaaggagcatattatttcttacatcaa---g---ctggaggcttgacaagctgtacacccgtctgtctgtatcttccccaaagtggta--ccttttcctaattcctgtaaagttgtgctagcagaggtcctgTTCTTTTGAT----tttttaaaattgaggt---gaaattcacataacctacaattaaccattttaaagtgtgtaactgagtgacgtatagtatgttc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47738391 420 + 74645514 CTTCCCTCCTGAATGCCAG----CCAGGC----------------TTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCTAACCTAAACCCTCTCA----------GCGACAACAGAGCTCTAAATGAGGGGAATAAAATGTTGACCACATTGCAGGGCCATTGTGTATAGATGTACAGGTCGTGCCCTGATGTGGGGCTCTGTGGCTCTGTCTACTCAGAGGAAGGAGCATATTATTTCTTACATCAA---G---CTGGAGGCTCGACAAGCTGTACACCCCTCTGTCTGTATCTTCCCCAAAGTGGTA--CCTTTTCCTAATTCCTGTAAAGTTGTGCTAGCAGAGGTCctgttcttttgat----tttttaaaattgaggt---gaaattcacataacctaccattaaccattttaaagtgtgtaaCTGAGTGACGTATAGTATgttc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10002537 420 - 75148670 CTTCCCTCCTGAATGCCAA----CCAGGC----------------TTTTTGG--------------------GGTGCTGCTGAGCCAAAGTCCTTTTAATTAAAAGGTACATCTAATCTAAACCCTCTCA----------GCGACAACAGAGCTCTAAATGAGGGGAATAAAATGTTGACCACATTGcagggccattgtgtgtagatgtacaggtcgtgccctgatgtggggctctgtggctctgtccactcagaggaaggagcatattatttcttacatcaa---g---ctggaggctcgacaagctgtacacccctctgtctgtatcctccccaaagtggta--ccttttcctaattcctgtaaagttgtgctagcagaggtcctgTTCTTTTGAT----ttttaaaaattgaggt---gaaattcacataacctacaattaaccattttcaagtgtgtaactgagtgacgtatagtatgttc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112882903 410 + 159171411 CTTCCCTCCTGAATGCCAA----CCAGGC---------------TTTTCTGG--------------------G----------GCCAGAGTCCTTTTAATTACAAGGTACATCAAATCTAAACTCTCTCA-TCCTGACGGGAGATGACAGAGCTCTAAATGAGGGGAATCAAATGTTGAACACATTGTAGTGTCATTGAGTATAGACGTACAGGTTGTACCCTGATGTGGGGCTCTGTGGCTTTGTCCACGCAGAGGAAGGAGCACATTATTTTTTATATCAA---G---CTGGAGgctcaacaagctgtgcactcctctgtttgtatctaccacaaagtggtg--ccttttcctaa-tcttgtaaagttgtgctagtagaggtcctATTC-TTTGAT----tttttaaaattgaggt---gaaattcatataacctgcaactaactattttaaa------aatggagtgacatttag--tgttc i calJac3.chr5 C 0 C 0 s mm10.chr11 99594066 458 + 122082543 tctgcctcccgagtgctgggattaaaggcgtgtgtcactaTAAGTTTTCTAAACACAAACCTATAGCATTTTGATGCATGTGGGTTGACATCCTTCTAAGCGAAAGATGTCTCAAGCCCTTAACCTTTTAGTCCAGTTGGGAGTCAGGAGACCTATATGTTAGGAT-CTGGGACGTTGATTGGGTTGTAACCTCACC--------AAGCACAGGTTGTTTCTGGATG--------TGGGGCTGTGTTCACACAGAAGAAGGCACATATCATTCTTCATGCCAATGTA---CTGTAGGTCTGAAAAGCCGTGT-TCCTTGGGTATATGTTAATGTCAAGATGGCGTTTTTTTTTCTGATTGTTGTAAAGTTGTACTA-TGGAGGCCTCACTCCTCTCCT----TTTAATAAATTGAAGGAAAAAAAATCATATAATGTGAAA-TAACTATTTAAATGTGTACAATAAAGTGACGTTTAGTGCATTT i mm10.chr11 I 122 I 2472 s canFam3.chr9 39434990 423 - 61074082 CTTCTCTTCTGCATGTCCA----CTTGGC---------------TCTTTTGG----------------------TGCTTC-AAGCTGAAGCCCTTCTAAGTAAAAGGTGCATCCAACCTAAGTCTTCCTA-ATCTGTTGGAAGCTAAGAGAGTGGTATATGAGGGACGTAGAGTGTTGAACATGTTTTAGACACATTGTGTATGAATGTGTAGGTtgtgccctgatg--------ggaggctctgtcctctcagaggagggag---agcctttttcacacaaa---gatcctataggctCAGTAAGCTGTATATTCTATAGACTGTGTCTACCTAAAGGTGGTG--CTTTTTTTCTAATGCTGGTAAGTCGTGTTAGTGGAAACCCCATGCCTTTGACTTAGttttttaagttgaagt---gaaattcacataatgtatactaaaccattttaaaatgtacaattgaatgacttttagtgcatcc i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48055945 7254 - 81552678 I a score=89886.000000 s hg38.chr17_JH159146v1_alt 187333 37 + 278131 ataatattgggcaacatcat--ctctctctagcttcaaa s panTro4.chr17 66306404 37 - 82630442 ataatgttgggcaacatcat--ctccctctagtttcaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24840769 37 - 73212453 ataatgttgggcaacatcat--ctctctctagtttcaaa i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53171501 37 + 80904711 ataatgttgtgcaacatcgt--ctctctctagtttcaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52735922 37 + 80997621 ataatgttgtgcaacatcgt--ctctctctagtttcaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47738811 37 + 74645514 ataatgttgtgcaacaTCGT--CTCTCTCTAGTTTCAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10002957 37 - 75148670 ataatgttgtgcaacatcgt--ctctttctagtttcaaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112883313 37 + 159171411 ataatgctgtgccacatctt--ctctctctacttttgga i calJac3.chr5 C 0 I 626 s canFam3.chr9 39435413 38 - 61074082 ataatgttttgcaccgccattcctttctctagcttaaa- i canFam3.chr9 C 0 C 0 e mm10.chr11 99594524 2472 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=1111275.000000 s hg38.chr17_JH159146v1_alt 187370 415 + 278131 aacttttccatcatcgcagaagaacacccccatg--acctttaagcaatcacttcccatacccctctacccccaggcactggctcaccactttgatttAATGACAAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGCG-TCTTTTATTTAATGCTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAACAGTGACAGT--------------------ATTTAAATCCATCCTTGCAGTGAACATTTATTTTCTGCTTCACAATACATAAGAAGATTATACAGGTATTATAAAAACATCAGTTGATACTCCCTTTcatcatttttcaaagtatattttgaggagtatttgtgttacagggtgttaacaggtaacataaaaatagagagttttctggctaagttagtttgggagtgatggttatagag s panTro4.chr17 66306441 433 - 82630442 aacttttccatcatcgcagaagaacacccccatg--acctttaagcaatcacttcccatacccctctacccccaggcactggctcaccactttgatttAATGACGAAAG--TTTATCCCTTGGAAT-GAAAGCCTCACTATGCA-TCTTTTATTTAATGCTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAACGGTGACAGTATATAGCCAACATCACATTCATTTAAATCCATCCTTGCAGTGAACATTTATTTTCTGCTTCACAATACATAAGAAGATTATACAGGTATTATAAAAACATCAGTTGATACTCCCTTTcatcatttttcaaagtatattttgaggagtatttgtgttacagggtgttaacaggtaacataaaaatagagagttttctggctaagttagtttgggagtgatggttatagag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24840806 437 - 73212453 aacttttccatcatcacagaagaacacccccatgacacctttaagcaatcacttcccatacccctctatccccaggcattggctcaccactttgatttAACGACGAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGCG-TCTTTTATTTAATGCTTGCTTCT-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAACGGTGATAGTATATAGCCAACATCACATTCATTTAAATCCATCCTTGCAGTTAACATTTATTTTCTGCTTCACAATACATAGGAATATTATACAGGTATTATAAAAACATCAGTTGATGCTCTCTTTCATCATTTTTCAAAGTATATTTTGAGGAGTATTTGTGTTACAGGGTGTTAACAGGTAACATAAAAATAGAGAGTTTTCTGGCTAAGTTAGTGTGGGAGTAATTGTTATAGAG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53171538 433 + 80904711 aacttttccatcatcccagtggaacgcccccatg--acctttaagcaatcacttcccatacccctctatccccagtcactggctcaccactttgatttAATGATGAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGTG-TCTTTTATTTAATACTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAATGGTGATAGTATACAGCCAACATCACATTCATTTAAATCCATCCTTGCAGTGAACATTTATTTTCTGCTTCACAATACATAAGAAGTATGTACAGATATTATAAAAACATCAGCTTATACTCCCTTTcaccatttttcgaagtatattttgaggagtattggtgttacagggtgttaacaggtaatataaaaat--agagttttctggctaagttagtttgggaGTGATGGTTATAGAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52735959 433 + 80997621 aacttttccatcatcccagtggaacgcccccatg--acctttaagcaatcacttcccatacccctctatccccagtcactggctcaccactttgatttAACGATGAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGTG-TCTTTTATTTAATACTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAATGGTGATAGTATACAGCCAACATCACATTCATTTAAATCCATCCTTGCAGTGAACATTTATTTTCTGCTTCACAATACATAAGAAGTATGTACAGATATTATAAAAACATCAGCTTATACTCCCTTTcaccatttttcgaagtatattttgaggagtattggtgttacagggtgttaacaggtaatataaaaat--agagttttctggctaagttagtttgggaGTGATGGTTATAGAG i macFas5.chr16 C 0 I 633 s papAnu2.chr16 47738848 433 + 74645514 AACTTTTCCATCATCCCAGAGGAACACCCCCATG--ACCTTTAAGCAATCACTTCCCATACCCCTCTATCCCCAGTCACTGGCTCACCACTTTGATTTAACGATGAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGTG-TCTTTTATTTAATACTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAATGGTGATAGTATACAGCCAACATCACATTCATTTAAATCTATCCTTGcagtgaacatttattttctgcttcacAATACATAAGAAGTATGTACAGATATTATAAAAACATCAGTTTATGCTCCCTTTCACCATTTTTCGAAGTATATTTTGAGGAGTATTGGTGTTACAGGGTGTTAACaggtaatataaaaat--agagTTTTCTGGCTAAGTTAGTTTGGGAGTGATGGTTatagtt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10002994 433 - 75148670 aacttttccatcatcccagaggaacgcccccatg--acctttaagcaatcacttcccatacccctctatccccagtcactggctcaccactttgatttAACGATGAAAGATTTTATCCCTTGGAAT-GAAAGCCTCACTATGTG-TCTTTTATTTAATACTTGCTTCA-TCTAGAA--CTCTCTCTGAAAATTAGAATAAGAATGGTGATAGTATACAGCCAACATCACATTCATTTATATCTATCCTTGCAGTGAACATTTATTTTCTGCTTCACAATACCTAAGAAGATTATACAGATATTATAAAAACATCAGTTTATACTCCCTTTcaccatttttcgaagtatattttgaggagtattggtgttacagggtgttaacaggtaatataaaaat--agagttttctggctaagttagtttgggaGTGATGGTTATAGAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112883976 423 + 159171411 aacttttc---cattccagaataac-cccacata--accttcaggcaatcacttcccatacctctctatccccagtcactgactcaccactttgatttGATGACCAAAGATTTTATACCTTGGAAT-GAAAGCCTCACAATATG-TCTTTTATTTAATGCTTGCTTCATTCTAGAG--CTCTCTCTGAAAATTAGAATAAGAATGGTGATAGTATATAGC------CACAGTCATTTAAATTCATTCTTGCGGTGAAAATTTACTTTCTGCTTCACAACACACAAGAAGATTGCACAGGTGTTATAAAATTATCAGTTGATACTCCCTTTcaacatttttcaaagtatattt---ggagtatcggtgttataggatgttaacaggtaatataaaaatagagagttttccagctaagttagtttgggattgatggttatagag i calJac3.chr5 I 626 C 0 s canFam3.chr9 39435451 408 - 61074082 aactttttcatcag--------------ctaata--atcttta-gtaatcattccccatttccctttatctcctgccactCATTTACCACTTTGAT---------------TTTATCCATTAAAATGGAAGGTCTTACTATGTGTTTTTTTATTTCATCCATGCTTCATTCTAGACCTCTCTCTCTGGAGATTAGAATAAGACTGGACATAGTGAAT-GCCAGTATCATGCTTGCTTAAACCCTTCC-TGTAATGAATATTTGTTTTCTACTTAACAATACATGAAAGAACTGTATAGATGTTAGAGAAACATTAGTTGAAATTCCCTTTcatcattttccaaagtatattttgaagaatactagtgttacaggatgttagttaataataaataaatggaagattccctgattaaatcaacttgggaataatagttttagag i canFam3.chr9 C 0 C 0 e mm10.chr11 99594524 2472 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=2794.000000 s hg38.chr17_JH159146v1_alt 187785 2 + 278131 tt s panTro4.chr17 66306874 2 - 82630442 tt i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53171971 2 + 80904711 Tt i rheMac3.chr16 C 0 I 1633 s macFas5.chr16 52737025 2 + 80997621 tt i macFas5.chr16 I 633 I 2 s papAnu2.chr16 47739281 2 + 74645514 tc i papAnu2.chr16 C 0 I 614 s chlSab2.chr16 10003427 2 - 75148670 tt i chlSab2.chr16 C 0 I 402 s calJac3.chr5 112884399 2 + 159171411 tt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39435859 1 - 61074082 -c i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24841243 0 - 73212453 C e mm10.chr11 99594524 2472 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=100.000000 s hg38.chr17_JH159146v1_alt 187787 1 + 278131 g s panTro4.chr17 66306876 1 - 82630442 g i panTro4.chr17 C 0 C 0 e ponAbe2.chr17 24841243 0 - 73212453 C e canFam3.chr9 39435860 0 - 61074082 C e mm10.chr11 99594524 2472 + 122082543 I e calJac3.chr5 112884401 0 + 159171411 C e chlSab2.chr16 10003429 402 - 75148670 I e papAnu2.chr16 47739283 614 + 74645514 I e macFas5.chr16 52737027 2 + 80997621 I e rheMac3.chr16 53171973 1633 + 80904711 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=-4265.000000 s hg38.chr17_JH159146v1_alt 187788 25 + 278131 -tttttt--ttttctttt-ctttttcttt s panTro4.chr17 66306877 25 - 82630442 -tttttt--tttttttct-tttctttttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24841243 22 - 73212453 ----TTT--Ttttttctt-ttcttttctt i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52737029 24 + 80997621 -ttcttt--ctttctttc-tttctttct- i macFas5.chr16 I 2 C 0 s papAnu2.chr16 47739897 25 + 74645514 -ttcttt--ctttctttcttttctttct- i papAnu2.chr16 I 614 C 0 s calJac3.chr5 112884401 2 + 159171411 -----------------------tt---- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39435860 25 - 61074082 tttctttaatattctatt-gtgcttt--- i canFam3.chr9 C 0 I 278 e mm10.chr11 99594524 2472 + 122082543 I e chlSab2.chr16 10003429 402 - 75148670 I e rheMac3.chr16 53171973 1633 + 80904711 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=1092567.000000 s hg38.chr17_JH159146v1_alt 187813 635 + 278131 tttttt---ttttttgagatggactctcactctgtcacccaggctgtagtgtagtggcgcgatcttgtttcaccgcaacctccacctcctggattcaagtgattctcctgcttcagcct---------gtaagaccacaggtgcccgccatgacgcctggctaatttttgtatttttagtagacacggggttttgccatgtttgtcatgctggtctcgaacttgtgacctcaggtgatccacctgcctcagcctccggaagtgctaggatgacaggtgtgagccactgagcccggccactggttgtagagctttatttattgcaggccatctcagtccctttaatattccagtgtggctttataaacttgcaaaaaggtgataaagcatacaacataatttgaccactgtata-ttttttcctctttgggcatctGAAGCTATTACTGGTCAGTGTGTAGCCTGTTTAGGAAATTATCTACCCTCTTATGCctggaagggatgttgtcagtaatgactcaattctctcatttcccaaattagaaataggtacccaggcaagtgaagggacttgctcaaggattcatggatagctagttacaaagttgggactagaactcaggagtcttgatttagctttttgttcttc s panTro4.chr17 66306902 635 - 82630442 tttttt---ttttttgagatggactcccactctgtcacccaggctgtagtgtagtggcgtgatcttgtttcaccgcaacctccacctcctggattcaagtgattctcctgcttcagcct---------gtaagaccacaggtgcccgccatgacgcctggctaatttttgtatttttagtagacacggggttttgccatgtttgtcatgctggtctcgaacttgtgacctcaggtgatccacctgcctcagcctccggaagtgctaggatgacaggtgtgagccactgagcccagccactggttgtagagctttctttattgcagggcatctcagtccctttaatattccagtgtggctttataaacttgcaaaaaggtgataaagcatacaacataatttgaccactgtata-ttttttcctctttgggcatctGAAGCTATTACTGGTCAGTGTGTAGCCTGTTTAGGAAATTATCTACCCTCTTATGCctggaagggatgttgtcagtaatgactcaattctctcatttcccaaattagaaataggtacccaggcaagtgaagggacttgctcaaggattcatggatagctagttacaaagttgggactagaactcaggagtcttgatttagctttttgttcttc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24841265 636 - 73212453 tttttg---tttttggagatggactctcactctgtcacccaggctgtagtgtagtggcacgatcttgtttcaccccaacctccacctcctggattcaagtgattctcctgcttcagcct---------gtaagaccacaggtgcccaccatgatgcctggctaatttttgtatttttagtagacacggggttttgccatgtttgtcatgctggtctcgaacttgtgacctcaggtgatccacctgcctcagcctccgaaagtgctaggatgacaggtgtgggccactgagcccggccACTGGTTGTAGagctttctttattgcagggcatctcagtccctttaatattccagtgtgactttataaacttgcaagatggtgataatgcatacagtatAATTTGACCACTGTATATTTTTTTCCTCTTTGGGCATCTGAAGCGATTACTGGTCAGTGTGTAGCCTGTTTAGGAAATTATCTACTCTCTTATGCctggaagggatgttgtcagtaatgactcaattctctcatttcccaaattagaaataggtacccaggcaagtgaagggacttgctcaaggattcatggatagctagttacaaagttgggactagaactcaggagtcttgatttagcattttgttcttc i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52737053 637 + 80997621 ttctttctgtcttttgagacagactctcactctgtcacccaggctgtagtgtagtggcacaatcttgtttcactgcaacctctacctcctggattcaagtgattctcctgcttcaggct---------gtgagaccacaggtgcccaccatgacgcctggctaatttttgtagttttagtagagacggggttttgccatgtttgccatgctggtctcgaacttgtgacctcaggtgatccacctgcctcagcctccgaaagtgctgggatgataggtgtgagccactgagcccggccACTGgttatagagctttctttattgcagggtatctcagtccgtttaatattccaatgtggctttataaacctgcaagatggtgataatgcatacgacattatttaaccactgtata-ttttttcctctttgggcatctGAAGCAATTACTGGTCAATGTGTCGCCTGTTTAGGAAATTATCTACTCTCTTATGCctggaagggatgttgttggtaatgactcagttctttcattttccaaattagaaataggtacccaggcaagcgaagggatttgctcaaggattcatggatagctagttacaaagctgggactagaactcaggAGTCTGTATTT-GCTTTTTGTTCTTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47739922 634 + 74645514 ttcttt---tctttcgagacagactctcactctgtcacccaggctgtagtgtagtggcacaatcttgtttcactgcaacctctacctcctggattcaagtgattctcctgcttcaggct---------gtgagaccacaggtgcccaccacgacgcctggctaatttttgtagttttagtagagacggggttttgccatgtttgccatgctggtctcgaacttgtgacctcaggtcatccacctgcctcagcctctgaaagtgctgggatgataggtgtgagccactgagcccggccactGGTTATAGAGCTTTCTTTATTGCAGGGTATCTCAGTCTGTTTAATATTCCAATGTGGCTTTATAAACCTGCAAGATGGTGATAATGCATACGACATTATTTAACCActgtata-ttttttcctctttgggCATCTGAAGCGATTACTGGTCAATGTGTCGCCTGTTTAGGAAATTATCTACTCTCTTATGCCTGGAAGGGATGTTGTTGGTAATGACTCAGttctttcattttccaaattAGAAATAGGTACCCAGTCAAGCGAAGGGATTTGCTCAAGGATTCATGGATAGCTAGTTACAAAGCTGGGACTAGAACTCAGGAGTCtgtattt-gctttttgttcttc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10003831 634 - 75148670 tttctt---tcttttgagacagactctcactctgtcacccaggctgtagtgtagtggtgtaatcttgtttcactgccacctctacctcctggattcaagtgattctcctgcttcaggct---------gtgagaccacaggtgcccaccatgacgcctggctaatttttgtagttttagtagagacgaggttttgccatgtttgccatgctggtctcgaacttgtgacctcaggtgatccacctgcctcagcctccaaaagtgctgggatgataggtgtgagccactgagcccggccACTGgttatagagctttctttattgcagggtatctcagtccgtttaatattccaaggtggctttataaacttgcaagatggtgataatgcatacaacattatttaaccactgtata-ttttttcctctttgggcatctgaagcgattactggtcAATGTGTTGCCTGTTTAGGAAATTATCTACTCTCTTATGCctggaagggatgttgtcggtaatgactcagttctctcattttccaaattagaaataggtacccaggcaagcgaagggacttgctcaaggattcatggatagctggttacaaagctgggactagaactcaggAGTCTGTATTT-GCTTTTTGTTCTTC i chlSab2.chr16 I 402 I 405 s calJac3.chr5 112884403 636 + 159171411 ttcttt---ctttttgagacagactctcactctgttgcccagggtataatgcagtggcgcgatcttgtttcactgcaacctccacctcctgggttcaggcgattctcctgcctcagcctcccgagtagctgagaccccaggtgcctgccatgatgcctggctaatttttgtatttttagtagagatggag--ttgccctgtttgccatgctggtctcaaactcatgacctcaggtgacccacccacctcagcctccaaaagtgctgggatgacagctgtgagccactaagcccagtcactggttatagagctttctttattgcaaggcatctcaattcctttaatattccaatgtggctttataaacttgcaagatggtgataatccattcaacattatttgatcactctata-tttttt-ctctttgagcatctGAAGCAATTACTAGTCAATGTGTCACCTGTTTAGGAAATTATGTACTCTCTTATGCCTGGAA-GGATTTTGTCAGTAATGACTcagttctcttattttccaagttagaaataggtacccaggcaagtgaagggacttgttcaaggattcatggatagttagttataacagtgggactagaactcaggtgtcttTA----GCTTTTTGTTTTTC i calJac3.chr5 C 0 C 0 e canFam3.chr9 39435885 278 - 61074082 I e mm10.chr11 99594524 2472 + 122082543 I e rheMac3.chr16 53171973 1633 + 80904711 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=81315.000000 s hg38.chr17_JH159146v1_alt 188448 116 + 278131 tacccaATAGCATAA----------------------------GCTAT---------------------TTTTACATCTTATGCTATTGGGTAGAAGG-AAAAAaaaaca---cactcaaatgttctttctactctctcactcaacaacaatcaacacagaagatttct s panTro4.chr17 66307537 117 - 82630442 tacccaATAGCATAA----------------------------GCTAT---------------------TTTTACATCTTATGCTATTGGGTAGAAGGAAAAAAaaaaca---cactcaaatgttctttctactctctcactcaacaacaatcaacacagaagatttct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24841901 117 - 73212453 tacccagTAGCATAA----------------------------GCTAT---------------------TTTTACATCTTATGCTATTGGGTAGAAGGAAAAAAaaaaca---cactcaaatgttctttctattctctcactcaacaacaatcaacacagaagatttct i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52737690 83 + 80997621 ---------------------------------------------------------------------CTTTTC----------------TAGAAGG-AAAAAaaaaaaaaccactcaaatgttctttctgttttctcactcaacaacaatcaacatagaagattttt i macFas5.chr16 C 0 I 307 s papAnu2.chr16 47740556 80 + 74645514 ---------------------------------------------------------------------cttttc----------------tagaagg-aaaaaaaaaca---cactcaaatgttctttctgttttctcactCAACAACAATCAACAtagaagatttct i papAnu2.chr16 C 0 I 304 s calJac3.chr5 112885039 161 + 159171411 TACCCAATAGCATAAAATGTAAAAAATAGCTTATACATCTTAGGCTATTATGCTTCATGTGAAAATAACTTTTACATCTTATGCCATTGGGTGGggga-----aaaacca---cagtcaaatgttttttctattctctctctcaatgacaatcaacacagaaaacttct i calJac3.chr5 C 0 C 0 e canFam3.chr9 39435885 278 - 61074082 I e mm10.chr11 99594524 2472 + 122082543 I e chlSab2.chr16 10004465 405 - 75148670 I e rheMac3.chr16 53171973 1633 + 80904711 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=38587.000000 s hg38.chr17_JH159146v1_alt 188564 80 + 278131 gtggctaatgtgtggggatttctccccatcaagaagcaaggaaataaattctgcagcagataccagctgcatgttttcca s panTro4.chr17 66307654 80 - 82630442 gtggctaatgtgtggggatttctccccatcaagaagcaaggaaataaattctgcagcagataccagctgcgtgttttcca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24842018 79 - 73212453 gtggctaatttgt-gggatttctccccatcaataagcaaggaaataaattctgcagcagataccagctgcgtgttttcca i ponAbe2.chr17 C 0 C 0 s calJac3.chr5 112885200 79 + 159171411 gtggccaa-atgtgggtatttctccccatcaataagcaaggaaataaattctgcagcagataccagctgtgtgttctcca i calJac3.chr5 C 0 C 0 e canFam3.chr9 39435885 278 - 61074082 I e mm10.chr11 99594524 2472 + 122082543 I e chlSab2.chr16 10004465 405 - 75148670 I e papAnu2.chr16 47740636 304 + 74645514 I e macFas5.chr16 52737773 307 + 80997621 I e rheMac3.chr16 53171973 1633 + 80904711 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=1685411.000000 s hg38.chr17_JH159146v1_alt 188644 735 + 278131 ctccaattccattctaacgctatttacttggtgatagtgtcaggttttacagggggagggctcagttctgtaagactgccccctacttccagtgccaagcaca--agctccaggttgttttgcctgtgcttctgaccaaccagccataaattgggaattccatgacaccctc---aagtttgatgaatgtgctagggcaggtcccaggactcagggaaacatttagcttattggtttattataaagacaattacaaatggcacagaagaagagatgcatagggtgaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagcacattccaggaacctccacac--attcagctatctggaagctcctcaaactctgtgggtt----tttttttttttttttttttgaacattttacggggacttcagtggatgggcatgatggacaaccattagaaacgtgattggacaaaaagagtatgatctaatgttagtagagtgagtgatgaaa----------cctgtctg-tcagatccttcttggtctctctatgcagccttccttcctccagggcatggggcagaacctcttctgaaatgggg-atcttatgacctacaatcaggcaaggtaggtaggagaatatcttgatggccagtgccaagaacagtgggggaagattcttgccttgaggagtaaaaggagcaggtgaaaagaggtggggagaaggcc--------------agagaGAGAGAGAG s panTro4.chr17 66307734 745 - 82630442 ctccaattccattctaacgctatttacttggtgatagtgtcaggttttacagggggagggctcagttctgtaagactgccccctacttccagtgccaagcaca--agctccaggttgttttgcctgtgcttctgaccaaccagccataaattgggaattccatgacaccctc---aagtttgatgaatgtgctagagcaggtcccaggactcagggaaacatttagcttattggtttattataaagacaattacaaacggtacagaagaagagatgcatagggtgaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagtacattccaggaacctccacac--attcagctatctggaagctcctcaaactctgtgg--t----tttttttttttttttttttgaacattttatggggacttcagtggatgggcatgatggacaaccattagaaacgtgattggacaaaaagagtatgatctaatgttagtagagtgagtggtgaaacccagtaaggcctgtctg-tcagatccttcttggtctctctatgcagccttccttcctccagggcatggggcagaacctcttctgaaatgggg-atcttatgacctaaaatcaggcaaggtaggtaggagaatatcttgacggccagtgccaagaacagtgggggaagattcttgccttgaggagtaaaaggagcaggtgaaaagaggtggggagaaggcca------------gagagagagagagag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24842097 757 - 73212453 ctccaattccattctaacgctatttacttggtgatagcttcaggttttacaaggggagggctcagttctgtaagactgccccatacttccagtgccaagcaca--agcttcaggttgttttgcctgtgcttccgaccaaccagccataaattgggaattccatgacaccctc---aagtttgatgaatgtgctagagcaggtcccaggactcagggaaacatttagcttattggtttattataaagacaattacaaaaggtacagaagaagagatgcatagggtgaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagcacattccaggaacctccacac--attcagctatctggaagctcctcaaactttgtgg--t----tttttttttttttttttttgaacattttatggaaacttcagtagatgggcatgatggacaaccattggaaatgtgattggacaaaaagagtatgatctaatgttagtagagtgagtggtgaaacccagcaaggcctgtctg-tcagatccttcttggtctctctatgcagccttccttcctccagggcatggggcacaacctcttctgaaatgggg-atctcatgacctacaatcagacaaggtaggtaggagaatatcttgacggccagtgccaagaacagtgggggaagattcttgccttgaggagtaaaaggagcaggtgaaaagaggggaggagaaggccagagaGAGGGAGCGAGAGAGAGAGAGAG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53173606 746 + 80904711 ctccagttccattctaatgctgtttacctggcgatagcgtcaggttttacagagtgagggctcagtcccgtaagactgccccctacttccagtgccaagcacatgagctccaggttgttttgcctgtgcttccgaccgaccagccgtaagttggaaattccacgaccccctccttaagtttgatgagtgtgctagagcggctcccaggactcagggaaacatttagtttattggtttatgataaagaccattacaaaaggtacagaagaagagaggcatagggtaaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagcacattccaggaacctccacac--attcagctctccggaagctcctcaaattccgtgg--g-------ttttttttttttttttgaacattttatggagacttcagtggatgggcatgatggacaaccattagaaacgtgattggacaaaaagagtatgatgtaatgttagtagagtgagtggtgaaacccggtaaggcctgtctgttcagatccttcttggtcactctgtgcagccttccttcctccagggcacggggcagaacctgttctgaaatgggg-atcttatgacctacaagcagacaaggaaggtaggagaatatcttgacggccagtgccaagaacagtgggggaagattcttgccttgaggagtaaaaggagcaggtgaaaagagggcaggagaagggc--------------agagaGAGAGAGAG i rheMac3.chr16 I 1633 I 13 s macFas5.chr16 52738080 753 + 80997621 ctccagttccattctaatgctgtttacctggcgatagcgtcaggttttacagagtgagggctcagtcccgtaagactgccccctacttccagtgcaaagcacacgagctccaggttgttttgcctgtgcttccgaccgaccagccgtaagttggaaattccacgaccccctccttaagtttgatgagtgtgctagagcggctcccaggactcagggaaacatttagtttattggtttatgataaagaccattacaaaaggtacagaagaagagaggcatagggtaaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagcacattccaggaacctccacac--attcagctctccggaagctcctcaaattccgtgg--gttgttttttttttttttttttttgaacattttatggagacttcagtggatgggcatgatggacaaccattagaaacgtgattggacaaaaagagtatgatgtaatgttagtagagtgagtggtgaaacccggtaaggcctgtctgttcagatccttcttggtcactctgtgcagccttccttcctccagggcacggggcagaacctgttctgaaatgggg-atcttatgacctacaagcagacaaggaaggtaggagaatatcttgacggccagtgccaagaacagtgggggaagattcttgccttgaggagtaaaaggagcaggtgaaaagagggcaggagaagggc--------------agagagagagagag i macFas5.chr16 I 307 I 56 s papAnu2.chr16 47740940 746 + 74645514 CTCCAATTCCATTCTAATGCTGTTTACCTGGCGATAGCATCAGGTTTTACAGGGTGAGGGCTCAGTCCCGTAAGACTGCCCCCTACTTCCAGTGCCAAGCACACAAGCTCCAGGTTGCTTTGCCTGTGCTTCCGACCGACCAGCCGTAAGTTGGGAATTCCACGACCCCCTCCTTAAGTTTGATGAGTGTGCTAGAGCGGCTCCCAGGACTCAGGGAAACATTTAGTTTATTGGTTTATGATAAAGACCATTACAAAAGGTACAGAAGAAGAGAGGCATAGGGTAAGGTGTGGGGGAAGGGGTATGAGGAGCTTTCATAACCTCTCTAGGAACAGCACATTCCAGGAACCTCCACAC--ATTCAGCTCTCCGGAAGCTCCTCAAattccatgg--t-------ttttttttttttttttggacattttaTGGAGACTTCAGTGGATGGGCATGATGGACAACCATTAGAAACGTGATTGGACAAAAAGAGTATGATGTAATGTTAGTAGAGTGAGTGGTGAAACCCGGtaaggcctgtctgttcagatccttctTGGTCACTCTGTGCAGCCTTCCTTCCTCCGGGGCACGGGGCAGAACCTCTTCTGAAATGGGG-ATCTTATGACCTACAAGCAGACAAGGAAGGTAGGAGAATATCTTGACGGCCAGTGCCAAGAACAGTGGGGGAAGATTCTTGCCTTGAGGAGTAAAAGGAGCAGGTGaaaagagggcaggagaagggc--------------agagagagagagag i papAnu2.chr16 I 304 I 22 s chlSab2.chr16 10004870 752 - 75148670 ctccaattccattctaatgctgtttacctggcgatagcatcaggttttacagggtgagggctcagtcccgtaagactgccccctacttccagtgccaagcacacaagctccaggttgttttgcctgtgcttccgaccaaccagccataagttgggaattccacgaccccctccttaagtttgatgagtgtgctagagcggctcccaggactcagggaaacatttagtttattggtttatgataaagaccattacaaaaggtacagaagaagagaggcatagggtaaggtgtgggggaaggggtatgaggagctttcataacctctctgggaacagcacattccaggaacctccacac--attcagctctctggaagctcctcaaattccgtgg--t-tttttttttttttttttttttttgacgttctatggagacttcagtggatgggcatgatggacaaccattagaaacgtgattggacaaaaagagtatgatgtaatgttagtagagtgagtggtgaaacccggtaaggcctgtctgttcagatccttcttggtcactctgtgcagccttccttcctccagggcacggggcggaacctcttctgaaatgggg-atcttaagacctacaagcagacaaggaaggtaggagaatatcttgatggccagtgccaagaacaatgggggaagattcttgccttgaggagtaaaaggggcaggtgaaaagagggcaggagaaggcc--------------agagCgagagagag i chlSab2.chr16 I 405 I 54 s calJac3.chr5 112885279 732 + 159171411 ctccagatctattctaatgctatttacgtggcaatagcgtcaggttttacagggcgagggcttagtccggtaagactgccccctacttccagtgccaagcaca--ggctccaggttgttttgcctgtgcttctgactgaccagtcatgatttgggaattccataataccctccttaagtttgattaatctactagagtggctcccagaactcagggaaatacttagcttattggtttataataaaga-aattacaaaaggcacagaggaagtgatgcatagggtgaggtatgggggaaaggg--tgaggagctttcataccctttctgggcacagcacctt-caggaccctccacacatattcagctatctggaagctcctgaaactctgcat--t------------------ttttttgacattttatggagacttcagtggttaggcacgatggacaaccattagaaacctgattggacaaaaagggtatgatctaatgctagtagagtgagtggtgaaacccagtaaagcctgtctgttcagatccttcttggtctctctgtgcagccttcctttctccagggcatggggcagaacctcttctgaaatggggaatcttaggacctacaatcagatgaggtaggtaggagaatatcttgatggacagcgccaaaaacagtaagggaagactcttgccttgaagagtaaaaggagcaggtgaaaagaggggaggagaatgtg--------------tgtatgagagagag i calJac3.chr5 C 0 C 0 e canFam3.chr9 39435885 278 - 61074082 I e mm10.chr11 99594524 2472 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=9821.000000 s hg38.chr17_JH159146v1_alt 189379 21 + 278131 AGCAAgagcaagtgagtgagc s panTro4.chr17 66308479 21 - 82630442 agcaagagcaagtgagtgagc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24842854 21 - 73212453 AGCAAGAGCAAGTAAgcgagt i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53174365 18 + 80904711 ---gagagagagagagagaga i rheMac3.chr16 I 13 C 0 s macFas5.chr16 52738889 21 + 80997621 agagagagagagagaaagaga i macFas5.chr16 I 56 C 0 s papAnu2.chr16 47741708 21 + 74645514 agagaggagaagagagagaga i papAnu2.chr16 I 22 C 0 s calJac3.chr5 112886011 9 + 159171411 ----------acagagaca-- i calJac3.chr5 C 0 C 0 e canFam3.chr9 39435885 278 - 61074082 I e mm10.chr11 99594524 2472 + 122082543 I e chlSab2.chr16 10005622 54 - 75148670 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=283127.000000 s hg38.chr17_JH159146v1_alt 189400 127 + 278131 gagagc--------------gagagagagagagattctgttttctgaggcctgcttctgaagtgtaaagtgccctaacatcaataaaagggctatgggagttatgagccta-gaccttgaat-gaaaTGTGTATATTCGTTAC s panTro4.chr17 66308500 141 - 82630442 gagagtgagagagcgagagagagagagagagagattctgttttctgaggcctgcttctgaagtgtaaagtgccctaacatcaataaaagggctatgggagttatgagccta-gaccttgaat-gaaaTGTGTATATTTGTTAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24842875 130 - 73212453 gagaaa------------gagagagagagagagattctgttttctgaggcctgcttctgaagtgtaaagtgccctaacatcaataaaagggctatgggagttatgagcctaggaccttgaat-gaaacgtgtatatTCGTTAT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53174383 128 + 80904711 gagaga--------------gagagagagagatattctgttttctgaggtctgcttctgaagtctaaagtgccctaacatcataaaaagggctatgggagttatgagcctaggaccttgaat-aaaaTGTGTATGTTTGTTAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52738910 128 + 80997621 gagaga--------------gagagagagagagattctgttttctgaggtctgcttctgaagtctaaagtgccctaacatcataaaaagggctatgggagttatgagcctaggaccttgaat-aaaaTGTGTATGTTTGTTAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47741729 128 + 74645514 gagaga--------------gagagagagagagattctgttttctgaggtCTGCTTCTGAAGTCTAAAGTGCCCTAACATCATAAAAAGGGCTATGGGAGTTATGAGCCTAGGACCTTgaat-aaaatgtgtatgtttgttaT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10005676 128 - 75148670 gagaga--------------gagagagagagagattctgttttctgaggtctgcttctgaagtctaaagtgccctaacatcataaaaagggctatgggagttatgagtctaggaccttgaat-aaaaTGTGTATGTTTGTTAT i chlSab2.chr16 I 54 C 0 s calJac3.chr5 112886020 129 + 159171411 gagata--------------gagacacagagagattctgttttctgaagcctgcttctgaagtctgaagtgccctaacatcataacaaaggctatgggagttatgaacccaggaccttgaatgaaaatgtatatatgtgttat i calJac3.chr5 C 0 C 0 e canFam3.chr9 39435885 278 - 61074082 I e mm10.chr11 99594524 2472 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=105319.000000 s hg38.chr17_JH159146v1_alt 189527 41 + 278131 ATGCTATTACTCTGTAATCTTGTGTTTGTATTCTTTCACAA- s panTro4.chr17 66308641 41 - 82630442 GTGCTATTACTCTATAATCTTGTGTTTGTATTCTTTCACAA- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24843005 41 - 73212453 GTGCTATTACTCTATAATCTTGTGTTTGTATTGTTTCACAA- i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53174511 41 + 80904711 GTGCTATTACTCTATAATCTTGTGTTTGTATTCTTTCCCAA- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52739038 41 + 80997621 GTGCTATTACTCTATAATCTTGTGTTTGTATTCTTTCCCAA- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47741857 41 + 74645514 GTGCTATTACTCTATAATCTTGTGTTTGTATTCTTTCacaa- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10005804 41 - 75148670 GTGCTATTACTCTATAATCTTGTGTTTGTATTCTTTCACAA- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112886149 41 + 159171411 GTGCTATTACTCTATAATTTTGTGTTGGTGATCTTTCACAA- i calJac3.chr5 C 0 C 0 s canFam3.chr9 39436163 41 - 61074082 ATGCTAGTAATTTGAAATCTTATGTTTACTGTCTTTC-CAAT i canFam3.chr9 I 278 C 0 e mm10.chr11 99594524 2472 + 122082543 I e nomLeu3.chr19 48055945 7254 - 81552678 I a score=1876307.000000 s hg38.chr17_JH159146v1_alt 189568 683 + 278131 TTTTTATTATGCTTTTGTATATCTTGGAGGACAGAAATAATTGTATACAACCTCATATATGAATGGATG--------AATGAATAGATTTGGCAAAACCTCAAGAAGCTG--------------------------AATCAATCTGTTGGAATACCTAGCCCACCACTTTGCACATGAGAGGACCTTAGGAAACAGTTCCTAAATG---------------------TTGTCAAGTTCCTTTAATCATATGTCTTGGCTGCA-AAATATTGGACCATTTAATGGTAAAACAAAGGAAAATTG-CTGTTAAATATCATCATTAAAAGAGCAAAAGTACAGAAAAACCATAGTGTCATGTCA----TGTTGATA-TTTTGAAAAATCCCAGTACCCCAATATTGTTAATAAATTCCAAAGCAAAGAAAGTTCAAACAACAAC--TTCATCATTGAAGAGATGAA--AACTTTTATTAAAT-TTAAGTCCCAA-TAAC--------TGTTGAAATATTTCAGGTGATATTTATAGTAAAATAGTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACAACCAGGTCTAGGAAAAATTTTTGGTCTTCCATTGTAAATGAATTTACTTCCTAGGGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAGGTGCCATCTTATCAGGATCCCCAGCAGAAGGA s panTro4.chr17 66308682 683 - 82630442 TTTTTATTATGCTTTTGTATATCTTAGAGGACAGAAATAATTGTATACAACCTCATATATGAATGGATG--------AATGAATAGATTTGGCAAAACCTCAAGAAGCTG--------------------------AATCAATCTGTTGGAATACCTAGCCCACCACTTTGCACATGAAAGGACCTTAGGAAACAGTTCCTAAATG---------------------TTGTCAAGTTCCTTTAATCATATGTCTTGGCTGCA-AAATATTGGACCATTTAATGGTAAAACAAAGGAAAATTG-CTGTTAAATATCATCATTAAAAGAGCAAAAGTACAGAAAAACCATAGTGTCATGTCA----TGTTGATA-TTTTGAAAAATCCCAGTACCCCAATATTCTTAATAAATTCCAAAGCAAAGAAAGTTCAAACAACAAC--TTCATCATTGAAGAGATGAA--AACTTTTATTAAAT-TTAAGTCCCAA-TAAC--------TGTTGAAATATTTCAGGTGATATTTATAGTAAAATAGTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACAACCAGGTCTAGGAAAAATTTTTGGTCTTCCATTGTAAATGAATTTACATCCTAGGGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAGGTGCCATCTTATCAGGATCCCCAGCAGAAGGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24843046 683 - 73212453 TTTTTATTATACTTTTGTATATCTTAGATGACAGAAATAATTGTATACAACCTCATATATGAATGGATG--------AATGAATAGATTTGGCAAAACCTCAAGAAGCTG--------------------------AATCAATCTGTTGGAATACCTAGCCCACCACTTTGCACATGTGAGGACCTTAGGAAACAGTTCCTAAATG---------------------TTGTCATGTTCCTTTAATCATATGTCTTGGCTGCA-AAATATTGGACCATTTAATGGTAAAACAAAGGAAAATTG-CTTTTAAATATCATCATTAAAAGAGCAAAAATACAGAAAAACCATAGTGCCATGTCA----TGTTGATA-TTTTGAAAAATCCCAGTACCCCAATATCCTTAATAAATTCCAAAGCAAAGAAAGTTTGAACAACAAC--TTCATCATTGAAGAGATGAA--AACTTTTATTAAAT-TTAAGTCCCAA-TAAC--------TGTTGAAATATTTCAGATGATATTTATAGTAAAATAGTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACAACCAGGTCTAGGAAAAATTTTTGGTCTTCCATTGTAAATGAATTTACATCCTAGGGAATTTACGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAGGTGCCATCTTATCAGGATCCCCAGCAGAAGGA i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53174552 703 + 80904711 TTTTTATTGTGTTTTTGTGTATCATAGATGATAGAAATAATTGTACACAACCTCATATATGAATGAATGAATGGACAAATGAATAGATTTGACAGAACCTCAAGAAGCTGAATAACAT-GAAATTCCTTTTTATAAAATCAGTCTATTGGAATACCTAGCCCACCACTTAGCACATGTGAGAACCTTAGGAAACAGTTCCTAAATG---------------------CTGTCATGTTCCTTTAATCATATGTCTTAGCTGCA-AAATATTGGACCATTTAATGGTAAAACAAAAGAAAATTA-CTTTTGAAGATCATCATTAAA--AGCAGAAATACAGAAAAACCATAGTGCCATGTCA----TGTTGATA-TTTTGAAAAATCCCAGCACCCCAATATCTGTAACAAATTCCAAAGCAAAGAAAGTTC---TAATGAC--TTCATCAT--------TGAA--AACCTTTATTAAAT-TTAAGTCCCAA-TAAT--------TGTTGAAATATTTCAGATGATATTTATAGTAAAATATTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACATCCAGGTCTAGGAAAAAATTTTGGTCTTCCATTGTAAATGAATTTACATCCTAGAGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAAGTGCCATCTTATCAGGATTCCCAGCAGAAGGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52739079 703 + 80997621 TTTTTATTGTGTTTTTGTGTATCATAGATGATAGAAATAATTGTACACAACCTCATATGtgaatgaatgaatggacaaatgaatAGATTTGACAGAACCTCAAGAAGCTGAATAACAT-GAAATTCCTTTTTATAAAATCAGTCTATTGGAATACCTAGCCCACCACTTAGCACATGTGAGAACCTTAGGAAACAGTTCCTAAATG---------------------CTGTCATGTTCCTTTAATCATATGTCTTAGCTGCA-AAATATTGGACCATTTAATGGTAAAACAAAAGAAAATTA-CTTTTGAAGATCATCATTAAA--AGCAGAAATACAGAAAAACCATAGTGCCATGTCA----TGTTGATA-TTTTGAAAAATCCCAGCACCCCAATATCTGTAACAAATTCCAAAGCAAAGAAAGTTC---TAATGAC--TTCATCAT--------TGAA--AACCTTTATTAAAT-TTAAGTCCCAA-TAAT--------TGTTGAAATATTTCAGATGATATTTATAGTAAAATATTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACATCCAGGTCTAGGAAAAAATTTTGGTCTTCCATTGTAAATGAATTTACATCCTAGAGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAAGTGCCATCTTATCAGGATTCCCAGCAGAAGGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47741898 703 + 74645514 tttttattgtgtttttgtgTATCATAGATGATAGAAATAATTGTACACAACCtcatatatgaatgaatgaatggacaaatgaataGATTTGACAGAACCTCAAGAAGCTGAATAACAT-GaaattcctttttataaaatCAGTCTATTGGAATACCTAGCCCACCACTTAGCACATGTGAGAACCTTAGGAAACAGTTCCTAAATG---------------------CTGTCATGTTCCTTTAATCATATGTCTTAGCTGCA-AAATATTGGACCATTTAAtggtaaaacaaaagaaaatta-cttttgaaGATCATCATTAAa--agcagaaatacagaaaaaccaTAGTGCCAtgtca----tgttgata-ttttgaaaaatccCAGTACCCCAATATCTGTAACAAATTCCAAAGCAAAGAAAGTTC---TAATGAC--TTCATCAT--------TGAA--AACCTTTATTAAAT-TTAAGTCCCAA-TAAT--------TGTTGAAATATTTCAGATGatatttatagtaaaatattatCTAACTCTTTTCACATTGTAGGACTTTGGCTGACATCCAGGTCTAGGAACAAATTTTGGTCTTCCATTGTAAATGAATTTACATCCTAGAGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTT---AGGATTCTAATTTGGCTAGTTTTAAAGTGCCATCTTATCAGGATTCCCAGCAGAAGGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10005845 703 - 75148670 TTTTTATTGTGTTTTTGTGTATCATAGATGATAGAAATAATTGTACACAACCTCATATatgaatgaatgaatggacaaatgaatAGATTTGACAGAACCTCAAGAAGCTGAATAACAT-GAAATTCCTTTTTATAAAATCAGTCTATTGGAATACCCAGCCCACCACTTAGCACATGTGAGAACCTTAGGACACAGTTCCTAAATG---------------------CTGTCATGTTCCTTTAATCATATGTCTTAGCTGCA-AAATATTGGACCATTTAACGGTAAAACAAAAGAAAATTA-CTTTTAAAGATCATCATTAAA--AGCAAAAATACAGAAAAACCATAGTGCCATGTCA----TGTTGATG-TTTTGAAAAATCCCAGTACCCCAATATCTGTGGCAAATTTCAAAGCAAAGAAAGTTC---TAACGAC--TTCATCAT--------TGAA--AACCTTTATTAAAT-TTAAGTCCCAA-TAAC--------TGTTGAAATATTTTGGATGATATTTATAGTAAAATATTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACATCCAGGTCTAGGAAAAAAATTTAGTCTTCCATTGTAAATGAATTTACATCCTAGAGAATTTATGTGGCTGTGTGATGAGAGGTTGCAAGTCCAGTGATAGGTGCTGGAGTTCAGAAGATCGTT---AGGATTCTAATTTGGCTAGTTTTAAAGTGCCATCTTATTAGGATTCCCAGCAGAAGGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112886190 711 + 159171411 TTTGTGTTATGCTTTTG--TATCTTAGTTGATAGAAATAATTGTACACAGCCTCCTGTATGAATGAATG--------GATGAGTAGATTTGACAAAACCTCAAGAAGCTGAATGACAT-GAAATTCCTTTTTATAAAATCAATCAGTTGGAATACCCAGCCCACCACCTTGCACATGTGAGGACCTTAGGAAACAGGTCCTAAGTG---------------------TTGTCATGTTCCTTTAATCATATGCCTTGGTTGAA-AAATATTGGACCATTTGATGGTAAAACAAAAGAAAATTA-CTTTTAAAGATCATCATTAAAAGAGCAAGAATACCAAAAAGCCATAGTGCCATGCCA----TGTTGATATTTTTGAAAAATTCCAGTGCCCCAATATCTTTAACAAATTCCAAAGCCAAGAAAGTTC---TAACAAC--TTCATCATTGAAAAGATTAA--AAATTTTATTAAAT-CTAAGTCACAA-CAACCATTGAAATATTGAAATATTTCAGGTGATATTTATAGTAAAATGTTATTCAACTCTTTTCACATTATAGGACTTTGACTGACGTCCAGGTTTAGGAAAGACTTTCGGTCTTCCCTTGTAAATGCATTTACATACTAGGGAATTTATATGGCTGCATAATGACAGGTTGCAAACCCAGTTATAGG-ACTGGAGTTCAGGAGTTTGTT---AGAATTCTAATTTGGTTAGTTTTGAAGTGCCATCTTAACAGGATTCCCATCAGAAGGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99596996 644 + 122082543 TCTGCATCACACCTCAGAATCCCTTTGATGCTTGAAAGAATCAGATGTAGACTCACATTTGAGTG------------ACGAGAGGGGTTTGGCAATGCCCTAGACACCAAAAGGACAC-AAACTTCCTCTTTGTAAAACTGAC-----------------------TTTGGTACACAGGGGCCACTCTGTTCAGGTGTCTTAATTA---------------------TTGTTGTGTTTTGTGGGTGATGTATTTCAGTTGCAGAAATAATGGGCCATTGA--GGGAGAATCAAAGA-------------AAGAGAATTATTAAA--A----------TGAAAAACTGTAG-----TGGCT----TATTGAGA-TTTTGAAAGAATCCAATA-CTCAGTATTATTAAAATATTTCAAGGAACAGAAAGCATTGACAATAACTTTTTACCATTGAAGAGACAAAATACTTTTTATTAAAT-ACAAATCCCAATTGGC--------TATTGAAGTAGTTCTGGTAATATTTATAGTAATGTAGTATACACTCCTTTCCACACAGTGGGTCTTTTGTTGGTGTTCAAG-CCAACAAAGATGTTGGCTCTTCCACCCCAAATGAATTTACCTCCT-GGGAAATTATGTAGCCGTGTCA----------ATAGCTGAGTTATCAATACTGAAGTTTAGAAGATTATTTTAAGGGTTGTAA-TTAGTTCATTTTGAAGTGTCATCTTCCTAAGATTCTTGCCAGAAGG- i mm10.chr11 I 2472 C 0 s canFam3.chr9 39436204 720 - 61074082 TATGTATTACCCTTTTA--TACCCTTGATAATTGAAAGAATTGTACACTGAGTC--ATGTGACTGA-----------AATAAAAAGATTTAGTAACACCTCAAGAAGCTAAATGACATAAAAATTCCTTTTTGTAAAATTGATCTTCTGGAACACCTAGCCCATCAGTTTGCATATGTGAGGACCTTGGGGAATAATTCTTAAATACTGATAGATTCTTTTTTTTTTCTGATAGATTCTTTTAATCATAGATTTTGGCTGC--AGATATTAGACTATTTAATGGTAAAACAAAGAAAAACCATCTTTCAAAGACCTTTATAACA-GGACAAAAATTAAGAAAAACCATACTGTCATAGCATAGTTATTGAGA-TTTTGAAAAATCCAAGTACCCCAATAGCAATAAAAAATTCCAAAGAAAAGAAAGCTCCAACAATGAC--TACATCACTGAAGA--ATAA--AAATTTTATTAAATCCCAACTCCAAA-GAGC--------TGTTGAGCTGCTTCAG---ACATTTATAGTAAAATTTTACATATTTCTCTTAAACTTGTAGGACTTCTGTTCATATCGACGTTTATGAAATATTTTTGGTCTTCGATTATAAATTAATTCACATCTTAGGAAAATTATGTAGCCATGTGATAAGAGTTTGCAAGCTGGATTTTGAGTATTAGAGCTCAGATG-TTGTT---GGGACTCTACATTGGCTCATTTTGAAGTACCAGTTTCTCAGGATTCCT-TTAGAATGA i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48055945 7254 - 81552678 I a score=1168019.000000 s hg38.chr17_JH159146v1_alt 190251 255 + 278131 GGTTTTCAACAA------------------------------GTGGGCTCA---------------GAGCAGTAGCAGCAGCAGACTGGGCGGCAACAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACGCAGCAGGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGgccatagccaatgccaccaccaatgcca s panTro4.chr17 66309365 255 - 82630442 GGTTTTCAACAA------------------------------GTGGGCTCA---------------GAGCAGTAGCAGCAGCAGACTGGGCGGCAACAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCGTGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTAACCACACAGCAGGGAGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCAATGCCACCACCAATGCCG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24843729 255 - 73212453 GGTTTTCAACAA------------------------------GTGGGCTCA---------------GAGCAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTAACCACGCAGCAGGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGCGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063199 255 - 81552678 GGCTTTTAGCAG------------------------------GTGGGCTCA---------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGTTGACAGCAGGATGGGGGCGTGCAGCTAACCACACAGCAGGGGGGCAGGCAGGTACCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCCTCCTGGCCATAGCCGATGCCACCACCAATGCCA i nomLeu3.chr19 I 7254 C 0 s rheMac3.chr16 53175255 255 + 80904711 GGTTTTCAACAA------------------------------GTGGGCTCA---------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACGCGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCTTCCTGGCCATAGCCGATGCCACCACCAATGCCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52739782 255 + 80997621 GGTTTTCAACAA------------------------------GTGGGCTCA---------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACGCGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCTTCCTGGCCATAGCCGATGCCACCACCAATGCCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47742601 255 + 74645514 GGTTTTCAACAA------------------------------GTGGGCTCA---------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACTGCTGCCTTCCTGGCCATAGCTGATGCCACCACCAATGCCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10006548 255 - 75148670 GGTTTTCAACAA------------------------------GTGGGCTCA---------------CAGGAGTAGCAGCAGCAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGACGGGCGGCAGCAGGAGGCCTCGGCGTGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGTAGGTGCCCTCCACACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACCGCTGCCTTCCTGGCCAGAGCTGATGCCACCACCAATGCCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112886901 255 + 159171411 GGTTTTCAACAG------------------------------GTGGGCTCA---------------CAGCACGAGTAGCAACAGACTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGATGGGGGTGTGCAGCTTGCCACACAGCAGGCGGGCAGGCAGGTGTCCTCTGCACGGCAGTCTGGGCGGCACCACCTGATACGGGTGCTCACAGCTCCACAGCCGCCCTCCTGGCCACAGCCGATGCTACCACCAATGCCA i calJac3.chr5 C 0 C 0 s mm10.chr11 99597640 268 + 122082543 --CTTTCAACAG------------------------------CTGGGCTCAGAGCAGCTGGGCTGGCAGCAGTAGCAGCAGCATGCTGGGCGGCAGCAAGACTGTCCACAGTAGGATGGACGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACACAGCAGGGGGGCAGGCAGGTGCCCTCCACGCGGCAGTCAGGGCGGCACCATCTAACACGGCAGCTCACACCTCCACTGCCACCCTCCTGGCCACAGCCAATGCCACCCCCAAAGCCA i mm10.chr11 C 0 T 6855 s canFam3.chr9 39436924 273 - 61074082 GGTTTTCAACAAGTAGACTGGCAGCAGGTGGGCTGGCAGCAGGTGGGCTGG---------------CAGCAGTAGGAGCAGCAGGCTGGGCGGCAGCAGGACTGTCCACAGTAGGATGGGCGGCAGCAGGAGGCCTGGGCATGGTGCAGCTGGCAGCAGGTTGGGGGTGTGCAGCTCACCACGCAGCAGGGGGGCAGGCAGGTGTCCTCCACGCGGCAGTCAGGGCGGCACCACCTGACTCGGCAGCTCATAGCTCCACTGCCACCCTCCTGGCC------------ACCACCAATGCCA i canFam3.chr9 C 0 C 0 a score=99974.000000 s hg38.chr17_JH159146v1_alt 190506 27 + 278131 cagccaGTTCCGCAGGAGCTGGTCTGG s panTro4.chr17 66309620 27 - 82630442 CAGCCAGTTCCGCAGGAGCTGGTCTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24843984 27 - 73212453 CAGCCAGTTCCGCAGGAGCTGGTCTGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063454 27 - 81552678 CAGCCAGTTCCGCAGGAGCTGGTCTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53175510 27 + 80904711 TAGCTGGTTCCGCAGGAGCTGGTCTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52740037 27 + 80997621 TAGCTGGTTCCGCAGGAGCTGGTCTGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47742856 27 + 74645514 TAGCTGGTTCCGCAGGagctggtctgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10006803 27 - 75148670 TAGCTGGTTCCGCAGGAGCTGGTCTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112887156 27 + 159171411 CAGCTGGTTCCGCAGGAGCTGGTCTGG i calJac3.chr5 C 0 I 2 s mm10.chr11 99591053 27 + 122082543 CTGCCAGTTCCACAGCAgctgggctgg i mm10.chr11 T 6855 C 0 s canFam3.chr9 39437197 11 - 61074082 CAGCCAGTCCC---------------- i canFam3.chr9 C 0 C 0 a score=4491.000000 s hg38.chr17_JH159146v1_alt 190533 2 + 278131 TA s panTro4.chr17 66309647 2 - 82630442 TA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844011 2 - 73212453 TA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063481 2 - 81552678 CA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53175537 2 + 80904711 CA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52740064 2 + 80997621 CA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47742883 2 + 74645514 ca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10006830 2 - 75148670 CA i chlSab2.chr16 C 0 C 0 s mm10.chr11 99591080 2 + 122082543 ca i mm10.chr11 C 0 C 0 e canFam3.chr9 39437208 0 - 61074082 C e calJac3.chr5 112887183 2 + 159171411 I a score=82104.000000 s hg38.chr17_JH159146v1_alt 190535 17 + 278131 GCAGCTTGGCTGGCAGC s panTro4.chr17 66309649 17 - 82630442 GCAGCTTGGCTGGCAGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844013 17 - 73212453 GCAGCTTGGCTGGCAGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063483 17 - 81552678 GCAGCTTGGCTGGCAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53175539 17 + 80904711 GCAGCTTGGCTGGCAGC i rheMac3.chr16 C 0 T 7344 s macFas5.chr16 52740066 17 + 80997621 GCAGCTTGGCTGGCAGC i macFas5.chr16 C 0 I 30 s papAnu2.chr16 47742885 17 + 74645514 gcagcttggctggcagc i papAnu2.chr16 C 0 I 30 s chlSab2.chr16 10006832 17 - 75148670 GCAGCTTGGCTGACAGC i chlSab2.chr16 C 0 I 30 s calJac3.chr5 112887185 17 + 159171411 GCAGCTTGGTTGGCAGC i calJac3.chr5 I 2 C 0 s mm10.chr11 99591082 17 + 122082543 gcagctgggctggcaac i mm10.chr11 C 0 C 0 s canFam3.chr9 39437208 17 - 61074082 ACAGCTGGGCTGGCAGC i canFam3.chr9 C 0 C 0 a score=225770.000000 s hg38.chr17_JH159146v1_alt 190552 67 + 278131 AGCTAGTTTCACAGCAGCTTGGCTGGCAGCAGCTAGAGTCACAAGTCCCACCGGTTGAGAAGCTAGG s panTro4.chr17 66309666 67 - 82630442 AGCTAGTTTCACAGCAGCTTGGCTGGCAGCAGCTAGAGTCACAAGTCCCACTGGTTGAGAAGCTAGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844030 67 - 73212453 AGCTAGTTTCACAGCGGCTTGGCTGGCAGCAGCTAGAGTCACAAGTCCCACTGGTTGAGAAGCTAGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063500 67 - 81552678 AGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCTGCAGGTCCCACTGGTTGAGAACCTGGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53168212 67 + 80904711 AGCTGGTCTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTTGAGAAGCTGGG i rheMac3.chr16 T 7344 C 0 s macFas5.chr16 52740113 67 + 80997621 AGCTAGTTTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAAGTCCCACTGGTTGAGAAGCTGGG i macFas5.chr16 I 30 C 0 s papAnu2.chr16 47742932 67 + 74645514 agctAGTTTCACAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAAGTCCCACTGGTTGAGAAGCTGGG i papAnu2.chr16 I 30 C 0 s chlSab2.chr16 10006879 67 - 75148670 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAAGTCCCACTGGTTGAGAAGCTGGG i chlSab2.chr16 I 30 C 0 s calJac3.chr5 112887202 67 + 159171411 AGCTGGTCTGGCAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACCAGTGGAGCAGCTGGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99591099 52 + 122082543 agctggtctgggagcagcaaggttggcagcaactggattggc---------------agcagctggg i mm10.chr11 C 0 I 6757 s canFam3.chr9 39437225 30 - 61074082 AGCTGGTCTGACAGCAAGTTGGCTGGCAGC------------------------------------- i canFam3.chr9 C 0 C 0 a score=52184.000000 s hg38.chr17_JH159146v1_alt 190619 16 + 278131 AAATCCACAGAAGCTG s panTro4.chr17 66309733 16 - 82630442 AAATCCACAGAAGCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844097 16 - 73212453 AAATCCACAGAAGCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063567 16 - 81552678 AAATCCGCAGAAGCTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53168279 16 + 80904711 AAATCCACAGAAGCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52740180 16 + 80997621 AAACCCACAGAAGCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47742999 16 + 74645514 AAACCCgcagaagctg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10006946 16 - 75148670 AAACCCACAGAAGCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112887269 16 + 159171411 AAATCCACAGAAGCTG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39437255 5 - 61074082 -----------AGCTG i canFam3.chr9 C 0 C 0 e mm10.chr11 99591151 6757 + 122082543 I a score=29760.000000 s hg38.chr17_JH159146v1_alt 190635 6 + 278131 GTCTGG s panTro4.chr17 66309749 6 - 82630442 GTCTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844113 6 - 73212453 GTCTGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063583 6 - 81552678 GTCTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53168295 6 + 80904711 GTCTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52740196 6 + 80997621 GTCTGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47743015 6 + 74645514 gtctgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10006962 6 - 75148670 GTCTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112887285 6 + 159171411 GTCTGG i calJac3.chr5 C 0 T 17955 s mm10.chr11 99597908 6 + 122082543 GTCTCG i mm10.chr11 I 6757 C 0 s canFam3.chr9 39437260 6 - 61074082 GTCTGG i canFam3.chr9 C 0 C 0 a score=86020.000000 s hg38.chr17_JH159146v1_alt 190641 19 + 278131 CAGCAGCTTGGCTG---------------GCAGC s panTro4.chr17 66309755 19 - 82630442 CAGCAGCTTGGCTG---------------GCAGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844119 34 - 73212453 CAGCAGCTTGGCTGGCAGCAGCTGGTCTCGCAGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063589 19 - 81552678 CAGCAGCTTGGCTG---------------GCAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53168301 19 + 80904711 CAGCAGCTTGGCTG---------------GCAGC i rheMac3.chr16 C 0 T 11311 s macFas5.chr16 52740202 19 + 80997621 CAGCAGCTTGGCTG---------------GCAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47743021 19 + 74645514 cagcagcttggctg---------------gcagc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10006968 19 - 75148670 CAGCAGCTTGGCTG---------------GCAGC i chlSab2.chr16 C 0 T 14772 s calJac3.chr5 112869336 19 + 159171411 CAGCAGCTTGGCTG---------------GCAGC i calJac3.chr5 T 17955 C 0 s mm10.chr11 99597914 19 + 122082543 CAACAGCTTGGCTG---------------GCAGC i mm10.chr11 C 0 C 0 s canFam3.chr9 39437266 19 - 61074082 CAGCTGGTTGGCTG---------------GCAGC i canFam3.chr9 C 0 C 0 a score=64585.000000 s hg38.chr17_JH159146v1_alt 190660 17 + 278131 AGCTGGTCTCACAGCAG s panTro4.chr17 66309774 17 - 82630442 AGCTGATCTCACAGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844153 17 - 73212453 AGCTGGTCTCACAGCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063608 17 - 81552678 AGCTGGTCTCACAGCAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53157009 17 + 80904711 AGCTGGTCTGGCAGCAG i rheMac3.chr16 T 11311 C 0 s macFas5.chr16 52740221 17 + 80997621 AGCTGGTCTCACAGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47743040 17 + 74645514 agctggtctcacagcag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9992215 17 - 75148670 AGCTGGTCTCACAGCAG i chlSab2.chr16 T 14772 C 0 s calJac3.chr5 112869355 17 + 159171411 AGCTGGTCTGACAACAG i calJac3.chr5 C 0 I 17919 s mm10.chr11 99597933 17 + 122082543 AGCTGGCCTCACAACAG i mm10.chr11 C 0 C 0 e canFam3.chr9 39437285 0 - 61074082 C a score=33031.000000 s hg38.chr17_JH159146v1_alt 190677 13 + 278131 CGTGGCTGGCAGG s panTro4.chr17 66309791 13 - 82630442 CATGGCTGGCAGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844170 13 - 73212453 CGTGGCTGGCAGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063625 13 - 81552678 TTTGGCTGGCAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53157026 13 + 80904711 CTTGGCTGGCAGC i rheMac3.chr16 C 0 I 18517 s macFas5.chr16 52740238 13 + 80997621 CGTGGCTGGCAGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47743057 13 + 74645514 cgtggctggcagg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 9992232 13 - 75148670 CGTGGCTGGCAGC i chlSab2.chr16 C 0 I 14742 s mm10.chr11 99597950 13 + 122082543 CTGGGCTGGCAAC i mm10.chr11 C 0 C 0 e canFam3.chr9 39437285 0 - 61074082 C e calJac3.chr5 112869372 17919 + 159171411 I a score=39672.000000 s hg38.chr17_JH159146v1_alt 190690 11 + 278131 AGCTGGTCTCA s panTro4.chr17 66309804 11 - 82630442 AGCTGGTCTCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844183 11 - 73212453 AGCTGGTCTCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063638 11 - 81552678 AGCTGGTCTCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53175556 11 + 80904711 AGCTGGTCTCA i rheMac3.chr16 I 18517 C 0 s macFas5.chr16 52740251 11 + 80997621 AGCTGGTCTCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47743070 11 + 74645514 agctggTCTCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10006987 11 - 75148670 AGCTGGTCTCA i chlSab2.chr16 I 14742 C 0 s mm10.chr11 99597963 11 + 122082543 AGCTGGACTGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39437285 11 - 61074082 AACTGGTCTGA i canFam3.chr9 C 0 C 0 e calJac3.chr5 112869372 17919 + 159171411 I a score=208917.000000 s hg38.chr17_JH159146v1_alt 190701 47 + 278131 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGA s panTro4.chr17 66309815 47 - 82630442 CAGCAGCTTGGCTGGCAGCAGCTGGATCCGCAGGTCCCACTGGTGGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844194 47 - 73212453 CAGCAGCTAGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063649 47 - 81552678 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCATGTCCCACTGGTGGA i nomLeu3.chr19 C 0 I 30 s rheMac3.chr16 53175567 47 + 80904711 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52740262 47 + 80997621 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47743081 47 + 74645514 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10006998 47 - 75148670 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCGCAGGTCCCACTGGTGGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112887291 47 + 159171411 CAGCAGCTTGGCTGGCAGCAGCTGGAGCCACAGGTCCCACTGGTGGT i calJac3.chr5 I 17919 C 0 s mm10.chr11 99597974 38 + 122082543 GTGCAGGTGGGCTGGCAGCAGCTGGAG---------CCACCTGTGGA i mm10.chr11 C 0 C 0 s canFam3.chr9 39437296 47 - 61074082 CAGCAGCTAGGCTGGCAGCAGCTGGAGCCACAGTTCCCACTGGTGGA i canFam3.chr9 C 0 C 0 a score=2303476.000000 s hg38.chr17_JH159146v1_alt 190748 602 + 278131 GCAGCTGGGAAATCCACAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGATCTGAAGGTTGGGTTGCTTGGAGGAGTTTCTGAATTATGGCTGCCTATTCCACTGCC-GGCTTTTTATAAGTCTGGGCCAATTCCTCTATTTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTCAAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTACAAACAATGGTATAATTTCCACTTGAGCTTCAGCTTCAGGTTTGCACTTGTGGGTATATCACCTGACAAAGTGACTCTCACCCATAAGGTGATGTGATTTTGGAGATCATATTCACCAAACCTCAGGTCTCCAGAAAAGAATTATTAATCAT-GATTGCCCTT-ATGTAAGAC----TG-CTTTGTATTTT--------TTAGACT------------------------------------------AATAAGATTATCCTCTCTCGATATAATCTTATTAGCCAGATAGAAACTCTGATAAACTCTATATTCATAGAAATTCATAGATTTTTCCCTG s panTro4.chr17 66309862 603 - 82630442 GCAGCTGGGAAATCCACAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGATCTGAAGGTTGGGTTGCTTGGAGGAGTTTCTGAATTATGGCTGCCTATTCCACTGCCGGGCTTTTTATAAGTCTGGGCCAATTCCTCTATTTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTCGAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAGTGTT-AACATTTTGTTTACAGACAATGGTATAATTTCCACTTGAGCTTCAGCTTCAGGTTTGCACTTGTGGGTATATCACCTGACAAAGTGACTCTCACCCATAAGGTGATGTGATTTTGGAGATCATATTGACCAAACCTCAGGTCTCCAGAAAAGAATTATTAATCAT-GATTGCCCTT-ATGTAAGAC----TG-CTTTGTATTTT--------TTGGACT------------------------------------------AATAAGATTATCCTCTCTCGATATAATCTTATTAGCCAGATAGAAACTCTGATAAACTCTATATTCATAGAAATTCATAGATTTTTCCCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844241 602 - 73212453 GCAGCTGGGAAATCCACAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGATCTGAAGGTTGGGTTGCTTGGAGGAGTTTCTGAATTATGGCTGCCTATTCCACTGCC-GGCTTTTTATAAGTCTGGGCCAATTCCTCTATCTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCTCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTCAAAATTGATTCTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTTCAAACAATGGTATAATTTCCACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGCATATCACCTGACAAGGTGACTCTCACCCGTAAGATGATGTGATTTTGGAGATCATATTCACCAAACCTCAAGTCTCCGGAAAAGAATTATTAATCAT-GATTGTTCTT-ATGTAAGAC----TG-CTTTGTATTTT--------TTAGACT------------------------------------------AATAAGATTATACTCTCTCGATATAATCTTATTAGCCAGATAGAAACTCCAATAAACTCTATATTCATAGAAATTAACAGATTTTTCCCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48063726 602 - 81552678 GCAGCTGGGAAATCCGCAGAAGCTGGTCTGACAGCAGGCCATAGTGTCAGGAGTTGATCTGAAGGTTGGGTTGCTTGGAGGAGTTTCTGAATTATGGCTGCCTATTCCACTGCC-GGCTTTTTATAAGTCTGGGCCAATTCCTCTATCTGTGGTGAACAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTACGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTCAAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTTCAAACAATGGTATAATTTCCACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGTGTATCACCTGACAAGGTGACTCTCACCCATAAGATGATGTGATTTTGGAGATCATATTTACCAAACCTCAAGTCTCCAGAAAAGAATTATTAATCAT-GATTGTCCTT-ATGTAAGAC----TG-CTTTGTATTTT--------TTAGACT------------------------------------------AATAAGATTATACTCGCTCGATATAATCTTATTAGCCAGATAGAAACTCCGATAAACTCTATATTCATAGAAATTCATAGATTTTTCCCTG i nomLeu3.chr19 I 30 C 0 s rheMac3.chr16 53175614 601 + 80904711 GCAGCTGGGAAATCCACAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGGTCTGAGGTTTGGGTTGCTTGGAGGAGTTTCTGAGTTGTGGCTGCCTATTCCACCTCG-GGCTTTTTATAAGTCTTGACCAATTCCTCTATCTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTTGAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTTCAAACAATGGTGTAATTTCTACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGCATATCATCTGACAAGGTGACTCTCACCCATAAGATGATGTGATTTTGGGGATTGTATTCACCAAACCTCAAGTCTCCAGAAAAGAATTATGAATCAT-GACTGTCC-T-ATGTAAGAC----TG-CTTTATATTTT--------TTAGACT------------------------------------------AGTAAGATTATACTCTCTCTATATAATCTTATTAGCCAGATAGAAATTCTGATAAACTCTACATTCATAGAAATTCATATATTTTTCACTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52740309 601 + 80997621 GCAGCTGGGAAATCCACAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGGTCTGAGGTTTGGGTTGCTTGGAGGAGTTTCTGAGTTGTGGCTGCCTATTCCACCTCG-GGCTTTTTATAAGTCTTGACCAATTCCTCTATCTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTTGAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTTCAAACAATGGTGTAATTTCTACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGCATATCATCTGACAAGGTGACTCTCACCCATAAGATGATGTGATTTTGGGGATTGTATTCACCAAACCTCAAGTCTCCAGAAAAGAATTATGAATCAT-GACTGTCC-T-ATGTAAGAC----TG-CTTTATATTTT--------TTAGACT------------------------------------------AGTAAGATTATACTCTCTCTCTATAATCTTATTAGCCAGATAGAAATTCTGATAAACTCTACATTCATAGAAATTAATATATTTTTCACTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47743128 602 + 74645514 GCAGCTGGGAAATCCGCAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGGTCTGAAGTTTGGGTTGCTTGGAGGAGTTTCTGAGTTGTGGCTGCCTATTCCACCTCG-GGCTTTTTATAAGTCTTGACCAATTCCTCTATCTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAACATATCTTGAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTggtaaaaatgtt-aacattttgttttcaaacaatGGTGTAATTTCTACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGCATATCATCTGACAAGGTGACTCTCACCCATAAGATGATGTGATTTTGGGGATTGTATTCACCAAACCTCAAGTCTCCAGAAAAGAATTATGAATCAT-GACTGTCCTT-ATGTAAgac----tg-ctttatatttt--------ttagacT------------------------------------------AGTAAGATTATACTCTCTCTCTATAATCTTATTAGCCAGATAGAAATTCTGATAAACTCTACATTCATagaaattcatatatttttcactG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10007045 601 - 75148670 GCAGCTGGGAAATCCGCAGAAGCTGGTCTGACAGCAGGCCATGGTGTCAGGAGTTGGTCTGAAGTTTGGGTTGCTTGGAGGAGTTTCTGAGTTGTGGCTGCCTATTCCACCTCG-GGCTTTTTATAAGTCTTGACCAATTCCTCTATCTGTGGCGAGCAACATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGATGGTTCAAATGCTGAATTGTTTTAAATATATCTTGAAATTGATTTTTCCTTATTGCTCAGCTAATACTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTTCAAACAATGGTGTAATTTCTACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGCATATCATCTGACAAGGTGACTCTCACCCGTAAGATGATGTGATTTTGGGGATTGTATTCACCAAACTTCAAGTCTCCAGAAAAGAATTATGAATCAT-GACTGTCCTT-ATGTAAGAC----TG-CTTTATA-TTT--------TTAGACT------------------------------------------AGTAAGATTATACTCTCTCTCTATAATCTTATTAGCCAGATAGAAATTCTGATAAACTCTGCATTCATAGAAATTCATAGATTTTTCACTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112887338 600 + 159171411 GCAGCTGGGAAATCCGCAGCAGGTGTTCTGACAGCAGGCCATGGTGTTGGGAGTTGGTCTGAAGGTTGGGTTGCTTGAAGGAGTTTCTGGGTTATGGCTGCCTATTTCACCTTG-GGCTTTTTATAAGCCTTGGCCAATTCCTCTGTTTGTGGCCAGCGGCATTTTTATCTTGTTACTCTTTAAACCAGCCTTTCTAGGGCCCTCTGACTGTTCAAATGCTGAATTGTTTTAAATACATCTTTGAATTGATTTTTCCTTATTGCTCAGCTAATGCTCACCAAATGTGTTTGTCCTTGGTAAAAATGTT-AACATTTTGTTTCCAAACAGTGGTATAATTTCCACTTGAGCTTCAGCTTCAGTTTTGCACTTGTGGGTATATCACCTGACAAGGTGACTCTCACCCATAAGATGATGTGATTCTGGGGCTCATATTCACCAAACCT---GTCTCCAGAAAAGAATTGTTAATCAT-GATCGTCCTTCATGTAAGAC----TGTCTCTATATTTT--------TTAGACT------------------------------------------GATAAGATTATACTCTGCCTATATAATCTTATTATGTAGATAGAAACTCTGATAAACTCTACATTCATAGAAATTTATAGATTTCTC-CTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99598012 572 + 122082543 GCAAGTGGGAAAGCCACAGAAGCTTGTAGCACAGCAGGCCATTGTGTTA-CCGTTGAGTTGAGAGCTGTGTAGTTGAGAGGAGTTTCTGGATTCTGGCTGCCTATCCTACCAAG-AGCCTTTTATAATCCTTGGCCAGTCACTC----TGCGACAGGTAACATATTTATCTTGTTACTCCTAAAACCAGACTTTCT--GGCCCT---------------CTGAGTTACTTTAAACATATCTGTAAGTGGGTGTGTCTTTGTTGCTCAGCTAATGCTCATTACATATGCTCATCTGAGGTAGACATGTTAAATGCTTTAAGCCCAAACAGAGTTGTGATTTCCACTTGAGTCTTAGCTTCAGTTTTGTGTTTGTGGTCACAGCACCTGACAAGGTGACTCTCATC-----GGAATTATAATAATGGGGA-CATACTCACCAAATCTCAAGTATTCAGGAAAGAGTTGTTGACCCTGGGTTGTACTT-CAAAAAGAC----TGTCTTTATGCTTCTAGTTATATTTTATT------------------------------------------GGTAAGATCACAGTTTCT-------ACATTGTTGCTCAGAAAG------TGATATATTATACATTGACAGgtatttacagattcctccata i mm10.chr11 C 0 I 124 s canFam3.chr9 39437343 619 - 61074082 GCAGGTGGGAAATCCACAGAAGCTAGTGGAGCAGCAGGCCATG--GTCAGGAGCTGGGTTGAGAGTTGGGTTGCTTAGTGGAGTTTCTGAGTGAGAGCTGCTTATTCCACTT-G-GGCCTTTTATAGGTCTTGGCCAGTTCCTTTGTTTGTGATGGACAGCATTTTTATCTTGTTACTCTTTAAACAAGCTTTTCCAGAGTCCTTTGATTGTTCAAATATTGAGTTATTTTAAATGCATCCTCAGATTGGTTTTTCCTTATTGCTCAGCTAATATTCACTAAATGT-TTCATCCTTAATAGAAATGTT-ATTGTTTCATTTCCAAACAATGCTGTAATTTCTCCTTAAGTCTCAGCTTCCATTCTGC------------ATCACCTGACAAAGTGACTCTCACTCATAAGATGATGTGATTTTAGGG-TCATATTCACCAAA-CTCAAGTCTCCAGAAAA-AATTAGTAACAAT-TGACTTTCTT-ATGTAAGACATTTTG-AGTGATGTTTT--------CTCAAGTCTGAAGTGTGAGATTCAGGAGAGATCATGGAAATTGACTATAATTAAGATTATAGTCTTTACA---------GTTAGTCAGATAGAAACTCTGATAAACTTCACATTGATAGAAATCCATAGATTTTTCCAG- i canFam3.chr9 C 0 C 0 a score=90474.000000 s hg38.chr17_JH159146v1_alt 191350 25 + 278131 AAATGGAATCT-TTCCAATTTCT-GTG s panTro4.chr17 66310465 25 - 82630442 AAATGGAATCT-TTCCAATTTCT-GTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844843 25 - 73212453 AAATGGAATCT-TTCCAATTTCT-GTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48064328 25 - 81552678 AAATGGAATCT-TTCCAATTTCT-GTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53176215 25 + 80904711 AAATGAAATCT-TTCCAATTTCT-GTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52740910 25 + 80997621 AAATGAAATCT-TTCCAATTTCT-GTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47743730 25 + 74645514 AAATGAAATCT-TTCCAATTTCT-GTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10007646 25 - 75148670 AAATGAAATCT-TTCCAATTTCT-GTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112887938 25 + 159171411 AAATGGAATCT-TTCCAATTTCT-GTG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39437962 27 - 61074082 AAATTGAATCTCTCCCAATTTCTCATG i canFam3.chr9 C 0 C 0 e mm10.chr11 99598584 124 + 122082543 I a score=4216195.000000 s hg38.chr17_JH159146v1_alt 191375 1164 + 278131 ATATCTCCTGAACTTCA--CA-TTCATATTTTAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTTCAATGTCT-----------------------CTTAAAAAAGAGGCTAAAA-TTCATATTCAGTAATTGGAAAAA-AT---TGCA-AAATATTTTAACAAAATTTACACTTCTCTATG-AAAGACAAAAATCACTTGTATATGGATTATCTGGCATA----TAATTTTTCAAAGGCAGAATTTAATTTTAATTTATGTCATTTCAAGTTACTAAACCATGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAAGGGAATAAATCAAAGAAAAAGCAAGAGTTAGAAAATACTTTTATCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGAAAAATTTCAGCAAAATAAAAGTTAAAACAATTCCTGGTCATTGCCAGAAGAAAGAATGTA-------AT-----TTT-CACTGGGAGTTTAGGG---TTACGTGAG-ATAAATGAAAAAAGG----CTGGTC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCAATCATGAATAGAAACACATAGTTAGCTTTTTATGAGGTGGTGGCATTTGTTTGTACAGGAATGGGGTTATATCACAATGTGATTCATGCCAGCTTCAGTAAAGATGTTCACGTCATATGGTAACCATGACTGTAGGTATGAAGTTGAAAATGGTTATATGTaatcaatgaatgttggagatcaaaaatgtagtaaattatcttgttccaccacttaattttataggtgtagaaactgaCAT--------------------CATTCTTATTATAAATAGCACATATTTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAAGATCCCATCTATTTGTTTTGTATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGCAATAGGAGGGATTAATCAAGGAAAAGAGTTGAGTATAGAACCATTTAGTCTC-AAAGTTCTAAATGGGAACATTGGTGATGTGCTATGGAGCACTTTTCATTTTCACTTAACATCGGCTGATGTTAGAATAC-----TCTtgagtc----------------ttgaagaggttaagtggcttg-ttccattcacacagtacacaaccagaagagctgg s panTro4.chr17 66310490 1164 - 82630442 ATATCTCCTGAACTTCA--CA-TTCATATTTTAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTTCAATGTCT-----------------------CTTAAAAAAGAGGCTAAAA-TTCATATTCAATAATTGGAAAAA-AT---TGCA-AAATATTTTAATGAAATTTACACTTCTCTATG-AAAGACAAAAATCACTTGTATATGGATTATCTGGCATA----TAATTTTTCAAAGGCAGAATTTAATTTTAATTTATGTCATTTCACTTTACTAAACCATGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAAGGGAATAAATCAAAGAAAAAGCAAGAGTTAGAAAATACTTTTATCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGAAAAATTTCAGCAAAATAAAAGTTAAAACAATTCCTGGTCATTGCCAGAAGAAAGAATGTA-------AT-----TTT-CACTGGGAGTTTAGGG---TTACATGAG-ATAAATGAAAAAAGG----CTGGTC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCAATCATGAATAGAAACACATAGTTAGCTTTTTATGAGGTGGTGGCATTTGTTTGTACAGGAATGGGGTTATATCACAGTGTGAGTCATGCCAGCTTCAGTAAAGATGTTCACGTCATATGGTAACCATGACTGTAGGTATGAAGTTGAAAATGGTTATATGTaatcactgaatgttggagatcaaaaatgtagtaaattatcctgttccaccacttaattttataggtgtagaaactgaCAT--------------------CATTCTTATTATAAATAGCACATATTTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAAGATCCCATCTATTTGTTTTGTATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGCAATAGGAGGGATTAATCAAGGAAAAGAGTTGAGTATAGAACCATTTAGTCTC-AAAGTTCTAAATGGGAACATTGGTGATGTGGTATGGAGCACTTTTCATTTTCACTTAACATCGGTTGATGTTAGAATAC-----TCTtgagtc----------------ttgaagaggttaagtggcttg-ttccattcacacagtacacaaccagaagagctgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24844868 1164 - 73212453 ATATCTCCTGAACTTCA--CA-TTCATATTTTAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTTCAATGTCT-----------------------CTTAAAAAAGAGGCCAAAA-TTCATATTCAGTAATTGGAAAAA-AT---TGCA-AAATATTTTAATGAAATTTACACCTCTCTATG-AAAGACAAAAATCACTGGTATATGGATTATCTGGCATA----TAATTTTTCAAAGGCAGAATTTATTTTTAATTTATGTCATTTCACATTACTAAACCATGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAAGAGAATCAATAAAAGAAAAAGCAAGAGTTAGAAAATACTTTTATC-GCTT--------TATGAGACAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGAAAAATTTCAGCAAAATAAAAGTTAAAACAATTCCTGGTAATTGCCAGAAGAAAGAATGTA-------AT-----TTTCCACTGGGAGTTTAGGG---TTACATGAG-ATAAATGAAAAAAGG----CTGGTC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCAGTCATGAATAGAAACACATAGTTAGCTTTTTATGAGGTGGTGACATTTGTTTGTACAGGAATGGGGTTATATTACAATGTGATTCATGCCAGCTTCAGTAAAGATGTTCACGTCATATGGTAACCATGACTGTAGGTATGAAGTTGAAAATGGTTATATGTaatcactgaatgttggagatcaaaaatgtagtaaattatcttgttccaccacttaattttataggtgtagaaactgaCAT--------------------CATTCTTATTATAAATAGCACAAATTTATTAA---CCTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAAGATCCCATCTATTTGTTTTGTCTCTTGCTCTAGTATAAAA---ATCGGTGTAGTAGCAATAGGAGGGATTAATCAAGGAAAATAGTTGAGTATAGAACCATTTAGTCTC-GAAGTTCTAAATGGGaacactggtgatgtggtaaggagcacttttcattttcacttaacatcggttgatgttagaatac-----tcttgagtc----------------ttgaagaggttaagtgacttg-ttccattcacacagtacacaaccagaagagctgg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48064353 1163 - 81552678 ATATCTCCTGAACTTCA--CA-TTCATATTTTAGGAAACATTGATCACTCAGGAGGATTTATAAAACAAAACCTGTTCAATTTCAATGTCT-----------------------CTTTAAAAAGAGGCTAAAA-TTCATATTCAGTAATTAGAAAAAGAT---TACA-AAATATTTTAATGAAATTTACACTTCTCTATG-AAAGACAAAAATCACTGGTATATGGATTATCTGGCATA----TAATTTTTCAAAGGCAGAATTTATTTTTAATTTATGTCATTTCACATTACTAAACCATGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAGAGGAATCAATCAAACAAAAAGCAAGAGTTAGAAAATACTTTTATCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGAAAAATTCCAGCAAAAT--AAGTTAAAACAATTCCTGGTCATTGCCAGAAGAAAGAATGTG-------AT-----GTTACACTGGGAGTTTAGGG---TTACATAAG-ATAAATGAAAAAAGG----CTGGTC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCAATCGTGAATAGAAACACATAGTTAGCTTTTTATGAGGTGGTGGCATTTGTTTGTACAGGAATGGGGTTGTATTACAAGGTGATTCATGCCAGCTTCAGTAAAGATGTTCACGTCATATGGTAACCATGACTGTAGGTATGAAGTTGAAAATGGTTATATGTaatcactgaatgttggagatcaaaaatgtagtaaattatc-tgttccaccacttaattttataggtgcagaaactgaCAT--------------------CATTCTTATTATAAATAGCACATATCTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAAGACCCCATCTATTTGTTTCGTATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGCAATAGGAGGGATTAATCAAGGAAAAGAGTTGAGTATAGAACCATTTATTCTC-AAAGTTCTAAATGGGAACATTGGTGGTGTGGTATGGAGCACTTTTCATTTTCACTTAACACCGGTTGATGTTAGAATAC-----TCTtgagtc----------------ttgaagaggttaagcaacttg-ttccattcacacagtacacaatcagaagatctgg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53176240 1161 + 80904711 ATATCTCCTGAACTTCA--CA-TTCATATCTGAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTCCAATGTCT-----------------------CTTAAAAGAGAGGCTAAAA-TTCATGTTCAGTAATTGGAAAAAGAT---TGCA-AAATATTTTAATGAAATCTACACTTCTCTATG-AAAGACAAAAATCACCGGTATATGGATTATCTGGCATA----TAATTTCTCAAAGGCAGAATTTATTTTTAATTTATGTCATTTCACATTACTAAACTGTGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAGGGAAATCAATCAAAGAAAAAGCAAGAGTTAGAAAATACTTTTTTCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGATAAATTTCGACAAAATAAAAGTTAAAACAATTCCTGGCCATTGCTAGAAGAAAGAATGTG-------AT-----TTTCTACTGGGAGTTTAGGG---TTACATAAC-ATACATGAAAAAAGT----CTGGAC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCCATCATGAATAGAAACACATAGTTAGCATTTTATGAGGTGGTGG----TGTTTATACAGGAATAGGGTTATATTACAATGTGATTCATGCCAGCATCAGTAAAGATGTTCATGTCATATGGTAACTATGACTGTAGGTATGACGTTGAAAATGGTTATATGTAATCGCTGAACGTTGGAGATCAAAAATGT-GTaaattatcttgttccaccacttaattttataggtgtagaaactgaCAT--------------------CATTCTTATTATAAATAGCACATATTTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAGGACCCCATCTGTTTGTTTCATATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGTAACAGGAGGGATTAATCAAGGAAAAGAGTTGAGTAAAGAACTATTTAGTCTC-AAAGTTCTAAATGGGAACATTGGTGGTGTGGTATGGAGCACTTTTCATTTTCACTTAACATTAGTTGGTGTTAGAATAC-----TCTtgagtc----------------ttggagaggttaagtgacttg-ttccattcccagagtacacaactagaagagctgg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52740935 1161 + 80997621 ATATCTCCTGAACTTCA--CA-TTCATATCTGAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTCCAATGTCT-----------------------CTTAAAAGAGAGGCTAAAA-TTCATATTCAGTAATTGGAAAAAGAT---TGCA-AAATATTTTAATGAAATCTACACTTCTCTATG-AAAGACAAAAATCACCGGTATATGGATTATCTGGCATA----TAATTTCTCAAAGGCAGAATTTATTTTTAATTTATGTCATTTCACATTACTAAACTGTGTGTCCTGTGAAAAGATATTAGAGCAAAGAGCATGACAACTGAATTTAGGAAGGGAAATCAATCAAAGAAAAAGCAAGAGTTAGAAAATACTTTTTTCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGATAAATTTCGACAAAATAAAAGTTAAAACAATTCCTGGCCATTGCTAGAAGAAATAATGTG-------AT-----TTTCTACTGGGAGTTTAGGG---TTACATAAC-ATACATGAAAAAAGT----CTGGAC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCCATCATGAATAGAAACACATAGTTAGCATTTTATGAGGTGGTGG----TGTTTATACAGGAATAGGGTTATATTACAATGTGATTCATGCCAGCATCAGTAAAGATGTTCATGTCATATGGTAACTATGACTGTAGGTATGACGTTGAAAATGGTTATATGTAATCGCTGAACGTTGGAGATCAAAAATGT-GTAAATTATCTTGTTCCACCACTTAATTTTATAGGTGTAGAAACTGACAT--------------------CATTCTTATTATAAATAGCACATATTTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAGGACCCCATCTGTTTGTTTCATATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGTAACAGGAGGGATTAATCAAGGAAAAGAGTTGAGTAAAGAACTATTTAGTCTC-AAAGTTCTAAATGGGAACATTGGTGGTGTGGTATGGAGCACTTTTCATTTTCACTTAACATTAGTTGGTGTTAGAATAC-----TCTtgagtc----------------ttggagaggttaagcgacttg-ttccattcccagagtacacaactagaagagctgg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47743755 1162 + 74645514 ATATCTCCTGAACTTCA--CA-TTCATATCTGAGGAAACATTGATCACTCAGGAGGATATATCAAACAAAACCTGTTCAATTCCAATGTCT-----------------------CTTAAAAGAAAGGCTAAAA-TTCATATTCAGTAATTGGAAAaagat---tgca-aaatattttaatgaaatgtacACTTCtctatg-aaagacaaaaaccaccgGTATATGGATTATCTGGCATA----TCATTTCTCAAaggcagaatttatttttaatttatgtcatTTCACATTACCAAACTGTGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAGGGAAATCAatcaaagaaaaagcaagagttagaaaatacttttttctgctt--------tataagGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGATAAATTTcgacaaaataaaagttaaaacaattccTGGCCATTGCTAGAAGAAAGAATGTG-------AT-----TTTCTACTGGGAGTTTAGGG---TTACATAAC-ATACATGAAAAAAGT----CTGGAC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCCATCATGAATAGAAACACATAGTTAGCATTTTATGAGGTGGTGG----TGTTTGTACAGGAATAGGGTTATATTACAATGTGATTCATGCCAGCATCAGTAAAGATGTTCATGTCATATGGTAACTATGACTGTAGGTATGACATTGAAAATGGTTATATGTAATCACTGAACGTTGGAGATCAAAAATGT-GTAAATTATCTTGTTCCACCACTTAATTTTATAGGTGTAGAAACTGACAT--------------------CATTCTTATTATAAATAGCACATATTTATTAA---CTTCTACTATGCCCAGAGCACTAAAGGCTTATACAGAAAGCAGGACCCCATCTGTTTGTTTCATATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGTAACAGGAGGGATTAATCAAGGAAAAGAGTGGAGTAAAGAACTATTTAGCCTC-AAAGTTCTAAATGGGAACATTGGTGGTGTGGTATGGAGcacttttcattttcacttaacattagTTGGTGTTAGAATAC-----TCTTGAGTC----------------TTGGAGAGGTTAAGCGACTTGTTTCCATTCCCACAGTACACAACTAGAAGAGCTGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10007671 1168 - 75148670 ATATCTCCTGAACTTCA--CA-TTCATATCTGAGGAAACATTGATCACTCAGGAGGATATATAAAACAAAACCTGTTCAATTCCAATGTCC-----------------------CTTAAAAGAGAGGCTAAAA-TTCATATTCAGTAATTGGAAAAAGAT---TGCA-AAATATTTTAATGAAATTTATACTTCTCTATG-AAAGACAAAAATCACCGGTATATAGATTATCTGGCATA----TAATTTCTCAAAGGCAGAATTTATTTTTAATTTATGTCATTTCACATTACTAAACTATGTGTCCTGTGAAAAGATATTAGACCAAAGAGCATGACAACTGAATTTAGGAAGGGAAATCAATCAAAGAAAAAGCAAGTGTTAGAAAATACTTTTTTCTGCTT--------TATAAGGCAGGTTAGAAAATGGGTGACCAAATATAGT---TCAAGAGGTA-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAGATTAAGATAAATTTCGACAAAATAAAAGTTAAAACAATTCCTGGCCATTACTAGAAGAAAGAATGTGATAAAATAT-----TTTCTACTGGGAGTTTAGGG---TTACATAAC-ATACATGAAAAAAGT----CTGGAC-AAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCCATCATGAATAGAAACACATAGTTAGCATTTTATGAGGTGGTGG----TGTTTGTACAGGAATAGGGTTATATTACAATGTGATTCATGCCAGCATCAGTAAAGATGTTCATGTCATATGGTAACTATGACTGTAGGTATGACATTGAAAATGGTTATATGTAATCACTGAACGTTGGAGATCAAAAATGT-GTAAATTATCTTTTTCCACCACTTAATTTTATAGGTGTAGAAACTGACAT--------------------CATTCTTATTGTAAATAGCACATATTTATTAA---CTTCTACTATGCCCGGAGCACTAAAGGCTTATACAGAAAGCAGGTCCCCATCTGTTTGTTTCATATCTTGCTCTAGTATAAAA---ATCAGTGTAGTAGTAACAGGAGGGATTAATCAAGGAAAAGAGTTGAGTAAAGAACTGTTTAGTCTC-AAAGTTCTAAATGGGAACATTGGTGGTGTGGTATGGAGCACTTTTCATTTTCACTTAACATTAGTTGGTGTTAGAATAC-----TCTtgagtc----------------ttggagaggttaagcgacttg-ttccattcccacagtatacaactagaagagctgg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112887963 1183 + 159171411 ATATCTCCTAAACTTCA--CA-TTCGTATTTGAGGAAACATTGATCACTCAGGAGGATATATGAAACAAAACCTGTTTCATGCCAGTGTTT-----------------------CTTCAAAGAGAGGCTAAAA-TTCATATTCAATAATTGGAGAAACAT---TGCa-aaatattttaataaaatttaCACTTCTTTATG-AAAGACAAAAATCACTGGTATATGAATTATCTGGCATA----TACTTTCTCAAAGGCAGAATTTACTTTTAATTTGTGTCATTTTATGTTACTAAACCATGTGTCCTGTGAAAAGGTATTAGACCAAAGAGCATGACAACTGGATTTAAGAAGGGGAATCAATCAAAGAAAAAGCAAGAGTTAGAAAATACTTTTATCTGCTT--------TATAAGACAGTTTAGAAAATGGGTGACCAAATATACT---TCAAGAGGTG-TAG------------------------------------------------------------------------------------------T-ATAA----------TAAATG------------------------------CAAAGAAATTAAGATAAATTTCAGCAAAATAAAAGTTAAAACAATTCTTGGTCATTGGCAGAAGAAACAATGTG-------AT-----TTTCCACTGGGAGTTTAGGG---TTCCATGAG-ATAAATGAAAAAACG----CTGGTCAAAA--AACATATTATTTCTACTTGGGGTAGGTTTATTTCTCCCTTCCAATCATGAACAGAAACACATAGTTAGCTTTTTATGAGGTGGTGGTATTCGTATGTACAGGACTGGGGTTATATTAAAATGTGATTCATGCCAGCTTCAGTAAAGATGTTCATGTCATGTGGTAACCGTGACTGTAGGTGTGAAGTTGAAAATGGTTATATGTaatcactgaatattggagatcaaaaacatagtaaactatcttgttccaccacttaattttataggtgtagaaactgaCAT--------------------CATTCTTATTATAAATAGCACGTATTTATTAA---CTTCTACTACGCCCAGAGCACTAAAGGCTTATACAGAAAGCAAGGCCCTATCTGTTTGTCTCATATCTTGCTCTAGTGTAAAA---ATCATTGTAGTAGCAATAGGAGGGATTAATTAAGGAAAAGAGTTTTGTATAGAACCATTTCCTCTC-AAAGTTCTAAATGGAAACGTTGCTTGTGTGGTATGGAGCGCTTTTCGTTTTCACTTAACATTGGTTGATGTTAGAATAC-----TCTTGAGTCTAGGGATGGCTACAATTTGAagaggttaagtgacttg-ttcctttcacatggcacacaatcagaagagctag i calJac3.chr5 C 0 C 0 s mm10.chr11 99598708 1131 + 122082543 gtatTTTCTACACTTAAGTTA-TTAATATTTGAGGAAACATTTGTCACTCAGAAGAGTATATGGAACAAATCCTGTTGCACTCCAATTCAA-----------------------TTTGAAGAAGAGGCTAAAATTTTATAAATAGTAACTGGGGAAAAACACACACA-AAATCTTCAAGTGAAATTTATACTTCTTTATGTGCATTAAAAAATTAATGCTATGTGGATCATCCGG-GCA----ACATCCCTCAAAGTCAGAGTTGA-TTTCAATTTATGTCATTT-ATGTTATTGTGCCATGTGTGC----------------AACAAAGAGGACAACAGGTCAATTTATAAAGAGGAGCCAAGGATACAAATGGAGTCAGGAAAATAGTATTTTTTTCTGCTT--------CATAATGTTTGT------AAGGGAGATTGAAAATGGTTTATCAATATGTGTTAG------------------------------------------------------------------------------------------TGGTTA----------TAAATG------------------------------CAAA-AACTTAAGGTAAATCTTAACAAACAATAAGCTAAAACAATTCCTGGTAGCCAACAGAAG--GCAATGTG-------ATATTTATTTCCACTAAGTGTTTAGGG---TTACGTGAGTGGACATGAAAAACAT-GTAGTGGCC-AAA--AGC-CACTTTTGCTGCCTGTAGTGTGTTTACT--GACCTTGTACATGTGGCTAGAAACACAAAGTT-GCCTTTTAGGAGAGGGTGATACTGTTGCAAACAGCGCTAAGATTACACTGGAATAGCATGCATACCAGTCTCAGTAAAGGTGG--ATGCTGTCTGGTAGCCATGACTACAGACATGAAGTTGAAAATGGTTACATGTAACCACTGAATAATGCAAAGAAAAACTA--ATAAGTCATCTT-TTCGACCACTTCATATTTTGGGTGCAGAAAGCAATAT---------------------GCTTTCATTAGAAGTATCACAAACTTGTTTT---GGTTTACTCTGCACAGAACACTAAAGGC-TATAAAGAAAGAGTAGAATTATCTGTTT------CATTTTGCTGGGGTGCACAAGGTATCAGTGGAGT--------------TCATTTAAAAAAATGAATTCAATACAGAGCCATT----CTCAAAAATCCTAGATTGGAACATCTGTGTGCTGGTAGAGGTGACTTCTCATTTTCCCTCAGTGTCAATTGTTAGGAGAACACAGTGATCTGGGATC---AGATAAAT-----TTGCAAAAGTTAAATGA-GCA-CTGAATTCACATAG---------GGAAGAGCTGG i mm10.chr11 I 124 I 507 s canFam3.chr9 39437989 1358 - 61074082 ATCTCTCCTGAATCTCA--CACTTCAGACTTGAGAAAACA----TCACTCAGGAAGATGTAGAGAACAAAAACTGTTCCATTCCAATTTACTATGGATATTTTATTAGCCAAAATTTAAAAGAAAGCCTAAAA-TTCATAGCCATTAATGAGGAAAATAC---TACACAGAAATGTAAGTGTAATTTATATTTTTCTATG-AATGATAAAAATCACTGCTATATAGATTATCTAG-ATAGTATTTATTTCTCATAAGTGGGATTTATTTTCAATTTATGTAATC------------ACCATGTGTCCTGTGAAAGGATATTAGACCAAAGAGCACAACAATTGAATTTATGAAGGGGAACCACTAAAAGGAAAAGCAGAAGTTAGGAAATAACCTTTCTGGATTACAGTGCATATAAGGCAGGGTAGGAAATGAATGATCAAATATCAT---TCAATAGGTA-TAGGTGGAAAAGGATTGATCTTTTGATATAGACCACTTTTAATTTCCCCTCACCACCAGCCAATGTTAGAATACTGTTGAATCTAGGAATGACT-ATAATTTGGAGAGGTAAGTGACTAGCTGCTCCATTTACACAGTACATAGCCAGAAAGCTGGATATACAT-TCAGGAAAATA-AATTTGAAACAGTT-TTGGTGGTTACCAAAAGAAAGAACATG-------TT-----GTCAAAAGAAGAATGTGTAGTGTTTACATGGGGGGAAATGAAAAAAGAAGTGGTGGCC-AAAAGAGCATATTATTGCTATTTGTGGTAGGTTTATTCTTTCCTTCCAATCTTGAATAGAAGCACATAGTTAGCTTTTTATGAGGTGGAAGTATTGGTTTGAACAGTGATAGAATTACATTAGAATGTGATTCATGCCAGTATCAAGAAAGATATTCATGTCATATGATAACCATGACCACATGTATGAAGTTGAAAAGTGGTTGAAGGAATCATCAAGTATCAGAGATCAAAAACA--ATAAATTGTTTTGTCCAAACATTTGATTGTATAGTTATAGAAACTGACATTTTTTAAAAGAAACTGACATCATTGTTTTTATAAGTATCAAATGTTTATTAAATCATCATATTATGCACAGAGCACTAAAGGGTTGTGCAGAAGG-GAGGTTCAATCTGTCTGCCTCATATCTTGCTCTAGTGTACAA---ATCATTGTAGTACTGATAGGAGGGATGAATCGAGGAAAAGATTCAAATATACTAACATCCATCCTT-ATAGTTTTAAGTTGGAACACTGATTTTTTGGTATAGACTGCTTTTAATTTCCTCTTGGCATCAGATGATGTTAGAATAC-----TACTGAGTCTAGGAGTGGCTGCATTTTGGAGAGATT-AGTGACTTG-GTTAATTCACACAATAGACAGCCAGAAGAGCTGG i canFam3.chr9 C 0 C 0 a score=16191.000000 s hg38.chr17_JH159146v1_alt 192539 5 + 278131 gtata s panTro4.chr17 66311654 5 - 82630442 gtata i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24846032 5 - 73212453 gtata i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48065516 4 - 81552678 gta-a i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53177401 5 + 80904711 gtata i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52742096 5 + 80997621 gtata i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47744917 5 + 74645514 GTATA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10008839 5 - 75148670 gtata i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112889146 5 + 159171411 gtata i calJac3.chr5 C 0 C 0 s canFam3.chr9 39439347 5 - 61074082 GTATA i canFam3.chr9 C 0 C 0 e mm10.chr11 99599839 507 + 122082543 I a score=815560.000000 s hg38.chr17_JH159146v1_alt 192544 233 + 278131 aaattcctatcacttgttcctagaccagttctttttattttata-ccatgctgcttttcAGAATCAATTAATGTTAGTAAGGCTCTTTGTCTTTGTCTTTTTTTCTAAAAAAAAAAGGTATTTTGTAATAGCACAAGAATAGAAATATTAGATGGTAGAGAGATGGCACTATGGAGTAGTGA-TTTTAAATACACAATAAATAAGTACAAATATGTTAAAGTTCTTTTAAGTATC s panTro4.chr17 66311659 231 - 82630442 aaattcctatcacttgttcctagaccagttctttttattttata-ccatgctgcttttcAGAATCAATTAATGTTAGTAAGGCTCTTTGTCTTTGTCTTTTTTTCT--AAAAAAAAGGTATTTTGTAATAGCACAAGAATAGAAATATTAGATGGTAGAGAGATGGCACTATGGAGTAGTGA-TTTTAAATACACAATAAATAAGTACAAATATGTTAAAGTTCTTTTAAGTATC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24846037 231 - 73212453 aaactcctatcacttgttcctagacctgttcttttcattttata-ccatgctgcttttcAGAATCAATTAATGTTAGTAAGGCTCTTTGTCTTTGTCTTTTTTTCT--AAAAAAAAGATGTTTTATAATAGCACAAGAATAGAAATATTACATGGTAGAGAGATGACACTATGGAGTAGTGA-TTTTAAATACACAATAAATAAGTACAAATGTGTTAAAGTTCTTTTAAGTATC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48065520 231 - 81552678 aaactcctatcactcattcctagaccagttctttttattttata-ccatgctgcttttcAGAATCAATTAATGTTAGTAAGGCTCTTTGTCTTTGTCTTTTTTTCT--AAAAAAAAGGTATTTTATAATAGCTCAAGAATAGAAATATTAGATGGTAGAGAGATGACACTATGGAGTAGTGA-TTTTAAATACACAATAAATAAGTATAAATATGTTAAAGTTCTTTTAAGTATC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53177406 231 + 80904711 aaactcctatcactcattcctagaccagttctttttattttata-ccatgctacttTTCAGAATCAATTAATGTTAGTAAAGCTCTTTGTATTTGTCTTTTTTTCT--TAAAAAAAGGTATTTTGTAATAGCTCAAGAATATAAATATTAGATGATAGACAGATGACACTATGGACTAGCAA-TTTTAAATACACAATAAATAAGTATAAATATGTTAAAGTTCTTTTAAGTATC i rheMac3.chr16 C 0 I 218 s macFas5.chr16 52742101 230 + 80997621 aaactcctatcactcattcctagaccagttctttttattttata-ccatgctacttttcAGAATCAATTAATGTTAGTAAAGCTCTTTGTATTTGTCTTTTTTTCT--T-AAAAAAGGTATTTTGTAATAGCTCAAGAATATAAATATTAGATGGTAGACAGATGACACTATGGACTAGCAA-TTTTAAATACACAATAAATAAGTATAAATATGTTAAAGTTCTTTTAAGTATC i macFas5.chr16 C 0 I 218 s papAnu2.chr16 47744922 230 + 74645514 AAACTCCTATCACTCATTCCTAGaccagttctttttattttata-ccatGCTACTTTTCAGAATCAATTAATGTTAGTAAAGCtctttgtatttgtctttttttct--t-aaaaaaggtATTTTGTAATAGCTCaagaatataaatattagatGGTAGACAGATGATACTATGGACTAGCAA-ttttaaatacacaataaataagtataaatatgTTAAAGTTCTTTTAAGTATC i papAnu2.chr16 C 0 I 195 s chlSab2.chr16 10008844 226 - 75148670 aaactcctatcactgattcctagaccaattctttttattttata-ccatgctacttTTCAGAATCAATTAATGTTAGTAAAGCTCTCTGTATTTGTCTTTTTTTCT--T-AAAAAAGGTATTTTGTAATAGCTCAAGAATATAAATAGTAGATGGT----AGATGACACTATGGACTAGCAA-TTTTAAATACACAATAAATAAGTATAAATATGTTAGAGTTCTTTTAAGTATC i chlSab2.chr16 C 0 I 195 s calJac3.chr5 112889151 214 + 159171411 aaactcctatcactcatttctaaaccagttctttttattttata-ccatgctgcTTTCCAGAATCAATTAATGTTAGTAAAGCTCTTTGTCTTTGTCTTTTTTTCT--AAA------------------AGCTCAAGAATAGAAATATTATATGGTAAACAGATTACACTATGAAATAGTGATTTTTAAATACACAATAAATAAGTATAAATATGTTAAAGTTCTTTTAAGTGTC i calJac3.chr5 C 0 C 0 s mm10.chr11 99600346 225 + 122082543 AAAGCCCCCTCTCCTGTCCTTAG-CCAGTTCTTTTTCTTTTCTAGCCTGGCTGCTTTCCAGATTCAGTGAGTATCAGTCAAACTCTTT-TATGTATCACCTTTATT--TTAAA-----TAGATTTTAGAAGTTCAAAAATATAGACATGAGGTGTTGGGTAGGATAAACTATGGAATAATAA-TGTGAAAGACACAGCAAAGATGTACAAGTATGTTATAGCCCCTTTAAGCATT i mm10.chr11 I 507 C 0 s canFam3.chr9 39439352 213 - 61074082 AAACTTCTATCTCTCCCTCCTACATCAATTCATTTTATTTTATA-CCATGCTGTTTTCCAGGATCAATTAA--GTATTAAAACTCTTTGTC----TCCTTATTTTT--AAAAAA----TACTTTAGAATAGCTCAAGAAGAGAAATACTAG-TAGTGGGCAGA-AATGCTATGGAGTAGTAA-------ACATACAGTAAATAAGCATGAATATGTTAAGATTCTTTTAGGTGTC i canFam3.chr9 C 0 C 0 a score=121008.000000 s hg38.chr17_JH159146v1_alt 192777 36 + 278131 ----TGGACCAGAG----ACTTATAATTGGAATAAGTCACATTT s panTro4.chr17 66311890 36 - 82630442 ----TGGACGAGAG----ACTTATAATTGGAATAAGTCACATTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24846268 36 - 73212453 ----TGGACCAGAG----ACTTATAATTGGAATAAGTCACATTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48065751 36 - 81552678 ----TGGACCAGAG----ACTTATAACTGGAGTAAGTCACATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53177855 36 + 80904711 ----tgGACCAGAG----ACTTATAATTGGAATAAATCACATTT i rheMac3.chr16 I 218 C 0 s macFas5.chr16 52742549 36 + 80997621 ----tgGACCAGAG----ACTTATAATTGGAATAAATCACATTT i macFas5.chr16 I 218 C 0 s papAnu2.chr16 47745347 36 + 74645514 ----tggaCCAGAG----ACTTATAATTGGAATAAATCACATTT i papAnu2.chr16 I 195 C 0 s chlSab2.chr16 10009265 36 - 75148670 ----tgGACCAGAG----ACTTATAATTGGAATAAATCACATTT i chlSab2.chr16 I 195 C 0 s calJac3.chr5 112889365 36 + 159171411 ----TGGACCAGCG----ACTTATAATTGCAATAAGTCACGTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99600571 30 + 122082543 ----------TTAA----ACCCAGAATTGAAAGAAGTCACATTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39439565 42 - 61074082 TTCTCACAAAAGAGTTTTACCTAAAGCTGCAATAA--CACATTT i canFam3.chr9 C 0 I 162 a score=344371.000000 s hg38.chr17_JH159146v1_alt 192813 94 + 278131 GCCTCCTAGTTG-TTT----------------------TTTGTTTCCCACATTCAACTAAGTTAATATACTTTCTGGGTTTCTACATCTGCTATACTCATTGTGT-CTTCTTTATTCC s panTro4.chr17 66311926 94 - 82630442 GCCTCCTAGTTG-TTT----------------------TTTGTTTCCCACATTCAACTAAGTTAATATACTTTCTGGGTTTCTACATCTGCTATACTCATTGTGT-CTTCTTTATTCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24846304 95 - 73212453 GCCTCCTAGTTGTTTT----------------------TTTGTTTCCCACATTCAACGAAGTTAATATACTTTCTGGGTTTCTACATCTGCTATACTCATTGTGT-CTTCTTTATTCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48065787 94 - 81552678 GCTTCCTAGTTG-TTT----------------------TTTGTTTCCCACATTCAACTGAGTTAATATACTTTCTGGGTTTCTACATCTGCTGTACTCATCGTGT-CTTCTTTATTCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53177891 93 + 80904711 GCTTCCTAGTCG--TT----------------------TTTGTTTCCCACATTCAACTAAGTTAATATACTTTCTGGGTTTCTACATCTGCCATACTCATTGTGT-CTTCTTTATTCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52742585 93 + 80997621 GCTTCCTAGTCG--TT----------------------TTTGTTTCCCACATTCAACTAAGTTAATATACTTTCTGGGTTTCTACATCTGCCATACTCATTGTGT-CTTCTTTATTCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47745383 94 + 74645514 GCTTCCTAGTCG-TTT----------------------TTTGTTTCCCACATTCAACTAGGTTAATAAACTTTCTGGGTTTCTACATCTGCCATACTCATTGTGT-CTTCTTTATTCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10009301 94 - 75148670 GCTTCCTAGTCG-TTT----------------------TTTGTTTCCCACATTCAACTAAGTTAATATACTTTCTGGGTTTCTACATCTGCCATACTCATTGTGT-CTTCTTTATTCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112889401 93 + 159171411 GCTTCCTAATTG-TTT----------------------TTCGTTTCCCACAATCAACTAAGTTAATAGACTTTCTGGGTTTCTACGTCTGCCATACT-ATTGTGT-CTTCATTATTCC i calJac3.chr5 C 0 C 0 s mm10.chr11 99600601 91 + 122082543 ACCTTCTAGCAG-TTC----------------------CTTGACTCCCACTTTGAAT----TTAACAGACTTTCTGGTTTTCTTTGCTTGTCATCTTCATTGTGGACTtctctctctc i mm10.chr11 C 0 I 624 s canFam3.chr9 39439769 111 - 61074082 gccacctaggca-ttccAACACATTTCATTCTTAACTATTTGTTTCCCACAATTA-----GGTAATATATCTTCTGAGTTTCTATGTCTGCCCTACTCTTTGTGT-CTTCTTTATTCC i canFam3.chr9 I 162 C 0 a score=367907.000000 s hg38.chr17_JH159146v1_alt 192907 112 + 278131 ATGGGTATTATCTTAGTTGAGCTCTTATTGTA-ATCACTT-GACCAAGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTACGACTCATTTCTCTGGCCTTTGACCTCTG s panTro4.chr17 66312020 112 - 82630442 ATGGGTATTATCTTAGTTGAGCTCTTATTGTA-ATCACTT-GACCAAGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTACGACTCATTTCTCTGGCTTTTGACCTCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24846399 113 - 73212453 ATGGGTATTATCTTAGTTGAGCTCTTATTGTACATCACTT-GACCAAGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTACGACTCATTTCTTTGGCCTTTGACCTCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48065881 114 - 81552678 ATGCGTATTATCTTAGTTGAGCTCTTATTGTACATCACTTGGACCAAGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTATGACTCATTTCTCTGGCCTTTGACCTCTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53177984 114 + 80904711 ATGGGTATTATCTTAGTTGAGCTCTTATTGTACATCGGTTGGACCAGGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTGCAACTTATTTCTCTGGCCTTTGACCTCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52742678 114 + 80997621 ATGGGTATTATCTTAGTTGAGCTCTTATTGTACATCGGTTGGACCAGGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTGCAACTTATTTCTCTGGCCTTTGACCTCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47745477 114 + 74645514 ATGGGTATTATCTTAGTTGAGCTCTTATTGTACATCGCTTGGACCAGAGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTGCAACTTATTTCTCTGGCCTTTGACCTCTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10009395 114 - 75148670 ATGGGTATTATCTTAGTTGACTTCTTATTGTACATCGCTTGGACCAGGGCAATATCTTCCTGATTAGTTTCTGTATAGTTCTGTGCAACTTATTTCTCTGGTCTTTGACCTCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112889494 114 + 159171411 AATGGTAACATCTGAGTTGAGCTCTTATTGTACATCACTTGGATCAAGGCAATGTCTCCCTGATTAGTTTCTGCATAGTTCTGTAGGACTTATTTTTCTGGCCTTTGACCTCTG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39439880 106 - 61074082 ATGGCTATCATTGTAGGTCAGTTCTTACTGTATATCACTTGGACCAGTACAATGGCCTCTTGAATTGTTTCTGTATAGCT--------ATTATATGTCTAGCCTTTGGCCTTAT i canFam3.chr9 C 0 C 0 e mm10.chr11 99600692 624 + 122082543 I a score=1752826.000000 s hg38.chr17_JH159146v1_alt 193019 481 + 278131 TCTTTATAAGGAGCTATCATGAGAATTGTCCCAATGCCCTGCTCTTGTTATGCCATTTTCCTGCCCCAAAGCTTTCAACAACTCCTTACTGCTTATTGCATTAAGGGTGTACTCCGTTGGCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCATTATCACTCTATATATATCCAGTGCCCCCAGCCAAACCGTACTCTGAACAACCCTATGGTTCCCCTCCCTCCACACCTTTGCTCATACTATTTCTATTGCTGAGAATGC---CA---TCCCTGTGATCTGGACACCACAATCTGAACCTATATAAAATGTTAGCTTCTCTTTTCAATCTTTCTTAT----TTTCCCCAACC-----AACAGTGACTTCTGTGTTGACACCACACAGT--GTTGTACTTTTATTTTTTAATATTCTAGTTTTTAGATGAATTATAGGTGAATATGACTCATGTCTCTAGAATCTTTTTGAAGATGGGAACATTTTTAA s panTro4.chr17 66312132 481 - 82630442 TCTTTATAAGGAGCTATCATGAGAATTGTCCCAATGCCCTGCTCTTGTTATGCCATTTTCCTGCCCCAAAGCTTTCAACAACTCCTTACTGCTTATTGCATTAAGGATGTACTCCGTTGGCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTATCACTCTATATATATCCAGTGCCCCCAGCCAAACCGTACTCTGAACAACCCTATGGTTCCCCTCCCTCCACACCTTTGCTCATACTATTTCTATTGCTGAGAATGC---CA---TCCCTGTGATCTGGACACCACAATCTGAACCTATATAAAATGTTAGCTTCTCTTTTCAATCTTTCTTAT----TTTCCCCAACC-----AACAGTGACTTCTGTGTTGACACCACACAGT--GTTGTACTTTTATTTTTTAATATTCTACTTTTTAGATGAATTATAGGTGAATATGACTCATGTCTCTAGAATCTTTTTGAAGATGGGAACATTTTTAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24846512 481 - 73212453 TCTTCATAAGGAGCTATCATGAGAATTGTCCCAATGCCCAGCTCTTGTTATGCCATTTTCCTGCCCCAAAGCTTTCAACAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCGTTGGCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTATCACTCTATATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAACCCTATGGTTCCCCTCCCTCCATACCTTTGCTCACACTATTTCTATTGCTGAGAATGC---AA---TCCCTGTGATCTGGGCACCACAGTCTGAACCTATATAAAATGTTGGCTTCTCTTTTCAATCTTTCTTAT----TTTCCCCAACC-----AATAGTGACTTCTGTGTTGACACCACACAGT--GTTGTACTTTTATTTTTTCATATTCTACTTTTTAGATGAATTATAGGTGAATATGACTCATGTCTCTAGAAGCTTTTTGAAGATGGaaatatttttaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48065995 481 - 81552678 TCTTTATAAGGAGCTATCATGAGAATTGTCCCAATACCCCGCTCTTGTTATGCCATTTTCCTGCCCCAAAGCTTTCAATAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCGTTGGCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTATCACTCTCTATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAACCCTATGGTTCCCCTCCCTCCATACCTTTGCTCGTACTATTTCTATTGCTGAGAATGC---CA---TCCCTGTGATCTGGGCACCACCGTCTGAACCCATATAAAATGTTAGCTTCTCTTTTCAATCTCTCTTAT----TTTCCCCAACC-----AATAGTGACTTCTGTGTTGACACCACACAGT--GTTGTACTTTTATTTTTTCACATTCTACTTTTTAGATGAATTATAGATGAATATGACTCACGCCCCTAGAAGCTTTTTGAAGAAGGGAACATTTTTAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53178098 481 + 80904711 TCTTTATAAGGTGCTATCATGAGAATTGTCCCAATGCCCAGCTCTTGTTATGCCATTTTCCTGCCCCAAAACTTTCAACAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCCTTGTCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTATCACTCTCTATATATCCAGTGCccccagccaaactgtactctgaacaatgctatggttcccctccctccatacctttgctcatactatttctattgctacgaatgc---ca---tccctcTGATCTGGGTAGCACAATCTGAACCCATATAAAATGTTAGCTTCTCTTTTCAATCTTTCTTTT----TTTCCTCAACC-----AATAGTGACTTCTGTGTTGATACCACACAGT--GTTGTACTTTTATTTTTTCATATTCTACTTTTTAGATGAATTATAGGTGAATATGACTCATGTCCCTAGAAGCTTTTTGAAGAAGGGAACATTTTTAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52742792 481 + 80997621 TCTTTATAAGGTGCTATCATGAGAATTGTCCCAATGCCCAGCTCTTGTTATGCCATTTTCCTGCCCCAAAACTTTCAACAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCCTTGTCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTATCACTCTCTATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAATGCTATGGTTCCCCTCCCTCCATACCTTTGCTCATACTATTTCTATTGCTACGAATGC---CA---TCCCTCTGATCTGGGTAGCACAATCTGAACCCATATAAAATGTTAGCTTCTCTTTTCAATCTTTCTTTT----TTTCCTCAACC-----AATAGTGACTTCTGTGTTGATACCACACAGT--GTTGTACTTTTATTTTTTCATATTCTACTTTTTAGATGAATTATAGGTGAATATGACTCATGTCCCTAGAAGCTTTTTGAAGAAGGGAACATTTTTAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47745591 481 + 74645514 TCTTTATAAGGTGCTATCATGAGAATTGTCCCAATGCCCAGCTCTTgttatgccattttcctgccccAAAGCTTTCAACAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCCTTGTCTAGTATTCAAAGCatacaaattttccaaatctttctttCACTATCACTCTCTATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAATGCTATGGTTCCCCTCCCTCCATACCTTTGCTCATACTATTTCTATTGCTACGAATGC---CA---TCCCTCTGATCTGGGTAGCACAATCTGAACCCATATAAAATGTTAGCTTCTCttttcaatctttctttt----tttccccaacc-----aATAGTGACTTCTGTGTTGACACCACACAgt--gttgtacttttattttttcatattctacTTTTTAGATGAATTATAGGTGAATATGACTCATGTCCCTAGAAGCTTTTTGAAGAGGGgaacattttaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10009509 477 - 75148670 TCTTTATAAGGTGCTATCATGAGAATTGTCCCAATGCCCAGCTCTTGTTATGCCATTTTCCTGCCCCAAAGCTTTCAACAGCTCCTTACTGCTTATTGCATTAAGGGTGTACTCCCTTGTCTAGTATTCAAAGCATACAAATTTTCCAAATCTTTCTTTCACTAGCACTCTCTATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAATGCTATGGTTCCCCTCCCTCCATACCTTTGCTCATACTATTTCTATTGCTACGAATGC---CA---TCCCTCTGATCTGGGTAGCACAATCTGAACCCATATAAAATGTTAGCTTCTCTTTTCAATCTTTCTTTT----TTTCC----CC-----AATAGTGACTTCTGTGTTGACACCACACAGT--GTTGTACTTTTATTTTTTCATATTCTACTTTTTAGATGAATTATAGGTGAATATGACTCATGTCCCTAGAAGCTTTTTGAAGAGGGGAACATTTTTAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112889608 481 + 159171411 TCTTTATAAGGAGCTATCATGAGAATTGTCCCAATGGCCAGTACTTGTTATGCCGTTCTCCTTCCCCAAAACTTTCAACAGCTCCTTAGTGC-TATTGCATCAATGGTGTACTCGCTTGGCTGGTATTGAAAGCATGCAAATTTTCCAAATCTTTCTTTCATGGTCACTCTCTATATATCCAGTGCCCCCAGCCAAACTGTACTCTGAACAACCCTATGG-TCCCCTCCCTCCATACATTTGCTCATACTTTTTCTATTACTGAGAATGC---CA---TCCCTCTGATCTGGGCACCACAATGTTAACCCATATAAAATGTTAGCTTCTTTTTAAAATCTTTCTTGT----TTTCCCCAACC-----AGTAGTGATTTCTGTGTTGATACCACATAGTACGTTGTGCTTTTATTTTTTCATATTCTACTTTTTAGATGAGTTATAGGTGAATTTGACTCATGTCCCTAGAAGTTTTTTGGGGAGGGGAACGTTTTTAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99601316 451 + 122082543 tcttcacaAGAAAC-ATCAC--AGACTATCCCAGCA-CCAACTCCTATTGTGCCATGC-ATGGACCCGAGGCTTTAGACAGCTCCTTAGAGCTTTCTTTCT--------GACTCGACTGGCTGATAGGCAAAGCATATTAATTCTCTAAATGATCCTTC--------CTCTTCATATATCCAGTG-CTCTAGCCAAATTGTA--TAGATGGGCCTTGAGGT---ACTTCCCCCATACCTCGGC-CATACTGTTTCCATGGATGAGGTCAC---CACTTTCCTTCTAGTCTGGGTAACTAAATTTTAACTCATATAAGATACTAACAG---TTTTCAAACTTCCTTAT----TCTTTCTAATAACAAGAATAGTAACATCTTCGTGGATCCTATA------TGTATACTTCTA-TTTCTCATATTCATCTATGTAGTTGTGTCA-AGGTAGATATGACTCATCTTCCCAGAGGC-TTTTAATAAAAGAAACATTTTgag i mm10.chr11 I 624 I 499 s canFam3.chr9 39439986 459 - 61074082 TTTTGATAAGCAGCTACCATAAGAAT----------------ACCCTTTGTGCCATTCACTTGCCCCAAGACTTTCAACAGCTCCCTAGTACTTACTGCACTAAGGGCATACTCCTTTGGTTAGTATTCAAAGCATACACATTTTCCAAATTTATTTTCCACTATCATTCTACATATATCCAGTGTTCCCAGCCAAACTATCCTCTGAACAGT----------CCCTCTCTCCATACCTTCATGTGTATTATTACCAGTGTTGAGAATGCTATCA---TCTTTTATACCTGCATGTCAAAATGTTAACCTATACAAAATGCTAGC-TCCCTTCTCAGTTTTCCTTGTTCTCTCTCCCTAGTC-----AATACCGATTTCTCTGTTGACATCAATGTAT--GTCGTACTTTT-TTTTTTCATTTTATAATTTTTAGTTGCATCATTG-TGAATTTCATTTATCTCCCTAGAAGTTTCTTGAAGAGGGGAGCATTTTCAA i canFam3.chr9 C 0 C 0 a score=298140.000000 s hg38.chr17_JH159146v1_alt 193500 79 + 278131 TTCAATTTTACTTTCTATTTTATACCATATAGCCTGTGACTTGCATATGGTAGGCAAGCAGCACATTtagaccctattt s panTro4.chr17 66312613 79 - 82630442 TTCGATTTTACTTTCTATTTTATACCATATAGCCTGTGACTTGCATATGGTAGGCAAGCAGCACATTtagaccctattt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24846993 79 - 73212453 ttcaattttaatttctattttataCCATATAGCCTGTGACTTGCATATGGTAGGCAAGCAGCACATTtagaccctattt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48066476 78 - 81552678 TTCAATTTTAATTTCTATTTTATACCATATAGCCTATGAC-TGCATATGGTAGGCAAGTAGCACATTtagaccctattt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53178579 79 + 80904711 TTCAATTTTAATTTCTATTTTATACCATGTAGCCTGTGACTTGCATATGGTAGGCAAACAGTGCATTtagaccctattt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52743273 79 + 80997621 TTCAATTTTAATTTCTATTTTATACCATGTAGCCTGTGACTTGCATATGGTAGGCAAACAGTGCATTtagaccctattt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47746072 79 + 74645514 ttcaattttaatttctattttataccATGTAGCCTGTGACTTGCATATGGTAGGCAAACAGTGCATTTAGACCCTATTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10009986 79 - 75148670 TTCAATTTTAATTTCGATTTTATACCATGTAGCCTGTGACTTGCATATGGTAGGCAAACAGTGCATTtagaccctattt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112890089 79 + 159171411 TTCAATTTTAATTTCTATTTTATACCATGTAGCCTGTGACTTGCATATGGTCAGCAAGCAGCACATTtagaccctattt i calJac3.chr5 C 0 C 0 s mm10.chr11 99602266 78 + 122082543 CTCAA-TTGAATGTTTCTTATAGTCCGTGCAGTCTGTGACTTGCAGGTGCTAAGCAATTAGCATTTTTGAGACCTAATT i mm10.chr11 I 499 I 254 s canFam3.chr9 39440445 71 - 61074082 CTCAATTTTAATTT-TATCATATACCATCTAGCCTGTGACTTGCAGATG-TAGGCAATCAGTATATTT------TATAT i canFam3.chr9 C 0 C 0 a score=45175.000000 s hg38.chr17_JH159146v1_alt 193579 20 + 278131 ----cttaactcatttaaaaacaa s panTro4.chr17 66312692 20 - 82630442 ----ctcaattcatttataaacaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24847072 20 - 73212453 ----ctcaactcatttaaaaacaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48066554 20 - 81552678 ----ctaaacttacttaaaaacaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53178658 20 + 80904711 ----gtcaacgtatttaaaaacaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52743352 20 + 80997621 ----gtcaacgtatttaaaaacaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47746151 20 + 74645514 ----GTCAACGTAtttaaaaacaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10010065 20 - 75148670 ----gtcaacgtatttaaaaacaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112890168 19 + 159171411 ----atcaacgga-ttaaagacaa i calJac3.chr5 C 0 C 0 s canFam3.chr9 39440516 24 - 61074082 GTTGGCAAATTGATTTAAGTAAAA i canFam3.chr9 C 0 C 0 e mm10.chr11 99602344 254 + 122082543 I a score=716968.000000 s hg38.chr17_JH159146v1_alt 193599 237 + 278131 cccaaaatggattaaatacttaaatataagaccacatataataaaacaactagaagaaaacccacaggaaacattttatgacacttgtctgggcaatgg-ttttttcttggggggataagacctcaaaggcacaggcaacaaaagtgaaagtaaacaaatgggattatataaaatt-aaaaccttctgcacagcaaaggaaacaatcaaatcagcagagtgaagagacagcctagagaa s panTro4.chr17 66312712 237 - 82630442 cccaaaatggattaaatacttaaatataagaccacacataataaaacaactagaagaaaacacacaggaaacattttatggcactggtctggacaatgg-ttttttcttggggggataagacctcaaaggcacaggcaacaaaagtgaaagtaaacaaatgggattatataaaatt-aaaaccttctgcacagcaaaggaaacaatcaaatcagcagagtgaagagacagcctagataa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24847092 237 - 73212453 cccaaaatggattaaatacttaaatataagaccacatataataaaactactagaagaaaacatacaggaaacattttatggcactcatctgggcaatgg-ttttttcttggggggataagacctcaaaggcacaggcaacaaaagtgaaagtaaacaaatgggattatataaaatt-aaaaccttctgcacagcaaaggaaacaatcaaatcaacagagtgaagagacaacctagagaa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48066574 238 - 81552678 cccaaactggattaagtacttaaatataagaccgcaaataataaaactactagaagaaaacatacaggaaacattttatggcactggtctgggcaattg-atttttttgggggtgataagatctcaaaggcacaggcaacaaaagtgaaagtagacaaaggggattatataaaactaaaaaccttctgcacagcaaaggaaacaatcaaatcaacagagtgaagagacaacctagagaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53178678 239 + 80904711 cccaaaatggattaaatacttaaatataagaccacaaataataaaactactagaagaaaacatacaggaagcattttatggcactggtctgggcaatggtttttttcttggggggataagacctcaaaggcacaggcaacaaaagtgaaagtagacaaatgggattatataaaagtaaaaaccttctgcacagcaaaggaaataatcaaatcaacagagtgaagagacaacctagagaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52743372 239 + 80997621 cccaaaatggattaaatacttaaatataagaccgcaaataataaaactactagaagaaaacatacaggaagcattttatggcactggtctgggcaatggtttttttcttggggggataagacctcaaaggcacaggcaacaaaagtgaaagtagacaaatgggattatataaaagtaaaaaccttctgcacagcaaaggaaataatcaaatcaacagagtgaagagacaacctagagaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47746171 239 + 74645514 cccaaaatggattaaatacttaaatataagaccgcaaataataaaactactagaagaaaacaagcaGGAAGCATTTTATGGCACTGGTCTGGGCAATGGtttttttCTTGGGGGGATAAGACctcaaaggcacaggcaacaaaagtgaaagtagacaaatgggattatataaaagtaaaaaccttctgcacagcaaaggaaataatcaaatcaacagagtgaagagacaacctagagaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10010085 239 - 75148670 cccaaaatggattaaatacttaaatataagaccgcaaataataaaactactagaagaaaacatacaggaagcattttatggcactggtctgggcaatggtttttttcttggagggctaagacctcaaaggcacaggcaacaaaagtgaaggtagacaaatgggattatataaaagtaaaaaccttctgcacagcaaaggaaataatcaaatcaacagagtgaagagacaacctagagaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112890187 238 + 159171411 cccaaaatggattaaatacttaagtataagactgcaaatgataaaactactagaagaaagcatacatgaaacatcttatggcactggtctgggcaatgg-ctttttctgatgggaataagacctcaaaggcacaggcaacaaaagtgaaaatagacaaatgggattatataaaactaaaagccttctgcacagcaaaggaaacaatcaaatcaacagagggaagagacaacctagagaa i calJac3.chr5 C 0 C 0 e canFam3.chr9 39440540 0 - 61074082 C e mm10.chr11 99602344 254 + 122082543 I a score=898.000000 s hg38.chr17_JH159146v1_alt 193836 2 + 278131 tg s panTro4.chr17 66312949 2 - 82630442 tg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24847329 2 - 73212453 tg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48066812 2 - 81552678 tg i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112890425 2 + 159171411 ca i calJac3.chr5 C 0 C 0 e canFam3.chr9 39440540 0 - 61074082 C e mm10.chr11 99602344 254 + 122082543 I e chlSab2.chr16 10010324 0 - 75148670 C e papAnu2.chr16 47746410 0 + 74645514 C e macFas5.chr16 52743611 0 + 80997621 C e rheMac3.chr16 53178917 0 + 80904711 C a score=488888.000000 s hg38.chr17_JH159146v1_alt 193838 953 + 278131 ggagaaaatatttTC-----TTTTTTGGTACttttttttttattatacttttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacgtgtgccatgttggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccccctccccccaccacacaacagtccccggtgtgtgatgttccccctcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattcca---tgtatatgtgccacattttcttaatccaatctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtatctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagca---ttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccacttattgatggggttgtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatattagccctttgtcagatgagtagattgcaaaaatt s panTro4.chr17 66312951 953 - 82630442 ggagaaaatatttTC-----TTTTTTGGTACtttttttaaaattatac-tttaagttctagggtacatgtgcacaacgtgcaggttttttacatatatatacgtgtgccatgttggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccccctccccccaccacacaataggccctggtgtgtgatgttccccctcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttctgtccttgcgatagtttgctgagaatgatgatttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattcca---tgtatatgtgccacattttcttaatccagtctatcattgatggacatttgggttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtatctttatagcagcatgattaataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctgtccagcacctgttgtttcctgactttttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagca--tttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcacccacttattgatggggttgtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatattagccctttgtcagatgagtagattgcaaaaatG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24847331 956 - 73212453 ggagaaaatatttTCTTTTTTTTTTTGGTACttttttt--tattatac-ttgaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacgtgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctcccccctctccccaccacacaacaggccctggtgtgtgatgttctccctcctgtgtccaagtgttctcattgttcaattcccacctatgagtgagaatatgcggtgtttggttttctgtccttgcaatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaattcatcattttttgtggctgcattgtattcca---tgtatatgtgccgcattttcttaatccaatctatcattgatggacatttgggttggttccaagtctttgttattgtgaatagtgccgcaatagacatacatgtgcatgtgtctttatagcagcatgatttataatcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctgtccagcacctgttgtttcctgaatgtttaatgatcaccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagca--tttttttcatgtgtctgttggctgcataaatgtcttcttttgagaagtgtctgttgatatccttcgcccacttgttgatggggttgtttgtttttttcttgtaaatttgtttgagttctttgtagattctggatatttgccctttgtcagatgagtatattgcaaaaatt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48066814 961 - 81552678 ggagaaaatatttTCTTTTTTTTTTTGGTACCCttttttttattatac-tttaagttctagggtacatgtgcacaacgtgcagttttgttacacatgtatacatgtgccatgttgctgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctccctcctccccccaccccacgacaggccgtggagtgtgatgtttcccttcctgtgtccaagtgttctcattgttcaattccca-ctatgagtgagaacatgcagtgtttggttttctgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctaaaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatcgagtctatcattgttggacatttggcttggttccaagtctttgctgttgtgaatagtgccacaataaacatatgtgtgcatgtgtctttatagcagcacgatttataatcctttgggtatacacccagtaatgggatggctgcgtcaagtggtgtttctggttctagatccctgaggaatcaccacactgtcttccacaatggttgaactagcttatagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctcccgcacctgttgtttcctgactttttaatgatcaccattctaattggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcatttttttttcatgtgtttgttggctgcataaagatcttcttttgagaagtgtctgttcgtatcctttgcccactttttgatggcgttgtttgttttttg-ttgtaaagttgtttgagttcattgtagattctggatattagccctttgtcaaaagagtagattgcaaaaatt i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 39440540 0 - 61074082 C e mm10.chr11 99602344 254 + 122082543 I e calJac3.chr5 112890427 0 + 159171411 C e chlSab2.chr16 10010324 0 - 75148670 C e papAnu2.chr16 47746410 0 + 74645514 C e macFas5.chr16 52743611 0 + 80997621 C e rheMac3.chr16 53178917 0 + 80904711 C a score=5348.000000 s hg38.chr17_JH159146v1_alt 194791 2 + 278131 tg s panTro4.chr17 66313904 2 - 82630442 tg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24848287 2 - 73212453 tg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48067775 2 - 81552678 tg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53178917 2 + 80904711 tg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52743611 2 + 80997621 tg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47746410 2 + 74645514 tg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10010324 2 - 75148670 tg i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39440540 0 - 61074082 C e mm10.chr11 99602344 254 + 122082543 I e calJac3.chr5 112890427 0 + 159171411 C a score=3130184.000000 s hg38.chr17_JH159146v1_alt 194793 1076 + 278131 ggagaaaatattttcaaactatgcatctgaccaggggttaatatctagaatatataaggaacttgaacaactcaacagtgaataat-aataaaaaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacatacaaatttccaacacatatatgaagaagtgctcagcatcactaatcatcaggaaatgcaaatcaaaaccgcaa-------tgagataccatatcaccacaattagaatggctattatcaaaaatacaaaaagataacaaatgctggtgtggatgtggaaaaaagggaactcatacaaggttagagggaatgtaaagtagtatagccattatggaaaacagtatggagggttccccaaaaattaaaaataggacgatcatgtgatccaggaatcccactactgagtatatacgcaaaggaaatgaaatc-agtatgttgaggagatttctgcacttccatgtttattgcagcacgattcacaacagccaacatatgaaaacaatctaagtgt-tcatcaatggatgaatggataaagaaaatgtgacacacact--cacacccaaaca------cacaatgaaatactatcagccat-gaaaaagaatgaaatactgtcatgtgcagcaacatggatgaacctgggggacattatgttaagtgaaattaaccaggcacagaaagacaaatagcacattcactcactcctatgtgaaatctaaagaagttgatctcatagaagtagagagtagaatagtgactaccagaggctggggagggtgagaggaggggaggataggcagagattggtctacaggtacaaagttacaggtagataggagggataagttttggtattctaatgtacagtagggtgactgtggttagtaatattttatcatatatttcaaaatagcgatcagagaatattttaaatgatcttaccatgaagaaatgataaatgtatgaggtgacgaatatgctaaacaccctgacttgattattacacaacgtatacatgtatggaaacattacattgcaccccataaatatgtacaattatgtgt s panTro4.chr17 66313906 1082 - 82630442 ggagaaaatattttcaaactatgcatctgaccaggggttaatatctagaatatataaggaacttgaacaactcaacagtgaataat-aataaaaaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacatacaaattgccaacacatatatgaagaagtgctcagcatcactaatcatcaggaaatgcaaat-gaaaccgcaagnnnnnnnnnnataccatatcaccacaattagaatggctattatcaaaaatacaaaaagataaaaaatgctggtgtggatgtggaaaaaagggaactcatacaaggttggagggaatgtaaagtagtatagccattatggaaaacagtatggagggttccccaaaaattaaaaataggacgaccatgtgatccaggaatcccactacggagtatatacgcaaaggaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttattgcagcacgattcacaacagccaacatatgaaaacaatctaagtgt-ccatcaatggatgaatggataaagaaaatgtgacacacact--cacacacaaaca------cacaatgaaatactatcagccat-gaaaaagaatgaaatactgtcatgtgcagcaacatggatgaacctgggggacattatgttaagtgaaattaaccaggcacagaaagacaaatagcacattctctcactcctatgtgaaatctaaagaagttgatctcatagaagtagagagtagaatagtgactaccagaggctggggagggtgagaggaggggaggataggcagagattggtctacaggtacaaagttacaggcagataggagggataagttttggtattctgatgtacagtggggtgactgtggttaataatattgtatcatatatttcaaaatagcgatcagagaatattttaaatgatcttaccatgaagaaatgattaatgtatgaggtgacgaatatgctaaacaccctgacttgattattacacaatgtatacatgtatggaaacatcacattgcaccccataaatatgtacaaatatGTGT i panTro4.chr17 C 0 M 575 s ponAbe2.chr17 24848289 1077 - 73212453 ggaggaaatattttcaaactatgcatctgaccaggggttaatatctagactatataaggaacttgaacaactcaacagtgaataat-agtaaaaaatccaattaaaaataggtgaaagacctgaatagatatttcacaaaagaaaacatacaaattgccaacacatatatgaagaagtgctcagcatcactaatcatcatgaaatgcaaatcaaaaccgcaa-------tgagataccatatcaccgcaattagaatggctattatcaaaaatacaaaaagataacaaatgctggtgtggatgtggaaaaaagggaactcatacaaggttggagggaatgtaaagtagtatagccattatggaaaacagtatggagggttccccaaaaattaggaatagaatgtccatatgattcaggaatcccactattgggtatacatgcaaaggaaatgaaaccaagtatgttgaggagatatctgcacttctatgtttattgcagcatgattcacaacagccaacatatgaaaacaatctaagtgt-ccatcaatggatgaatggataaagaaaatgtgacacacact--cacacacacaca------tacaatgaaatactatcagccat-gaaaaagaatgaaatactgtcatgtgcagcaacatggatgaacctgggggacattatgttaagtgaaattaaccaggcacagaaagacaaatagcacattctctcactcctatgtgaaatctaaagaagttgatctcatagaagtagagagtagaatagtgactactagaggctggggagggtgagaggaggggaggataggcagagattggtctataggtacaaagttacaggtagatagaaaggataagttttggtattctaatgtacagtagggtgactgtggttagtgatattgtatcatgtatttcaaaataactatcagagaagatattaaatgatcttaccatgaagaaatgataaatgtatgaggtggcgaatatgctaaacaccctgacttgattattacaaaatgtatacatgtatggaaacatcacactgcaccccataaatatgtacaattatgtgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48067777 1077 - 81552678 ggagaaaatattttcaaactatgcatctgaccaggggttaatatccagaatatataaggaacttgaacaactcaacagtgaataat-aataataaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacatacaaattgccaacacatatatgaagaagtgctccgaatcactaatcatcaggaagtgcaaatcagaaccgcaa-------tgagatatcatatcaccccaattagaatggctattatcaaaaatacaaaaaaataacaaatgctggtgtggatgtggaaaaaagggaattcatacaaggttggagggaatgtaaagtagtatagcctttatggaaaacagtatggagggtcccctaaaaattaaaaatagaactaccatatgatccaggaatcccactattgagtatatatccaaaggaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttattgcagcactattcacaacagccaacatatgaaaacaatctaagtgt-ccatcaatggatgaatggataaagaaaatgtgacacacactcacacacacacaca------cacaatgaaatactatcagccac-gaaaaagaatgaaatactatcacgtgcagcaacatggatgaacctggaggacgttatgttaagtgaaattaaccaggcacagaaagacaaatagcacattctctcact-ctatgtgaaatctaaagaagttgatctcacagaagtagagaggagaatagtggctaacagaggctggggagggtgagaggaggggaggataggcagagattggtctacaggtacaaagttacaggtagataggagggataagttttggtattctaatgtacagtagggtgactatggttagtaattttttatcgtatatttcaaaatagctatcagagaagattttaaatgatcttaccatgaagaaatgataaatgtatgaggtgacaaatatgctaaacaccctgacttgattattacaaaatgtatacgtgtatggaaacatcacactgcaccccataaatatgtacaattatgtgt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53178919 1062 + 80904711 ggagaaaatattttcaaactatgcatctgaccaggggttaatatccagaatatataaggaacttgaacaactcaacagtgaataac-gataataaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacacacaaatggccaacacatatatgaagaagtgctcagcatcactaatcatcatgaaatgcagatcaaaaccacaa-------tgagataccatatcaccccaattagaatggctattatcaaaaatacaaaaaagtaacaaatcctggtgtggatgtggtaaaaggggagctcatacaaggttggagggaatgtaaagtagcatagccattatggaaaacagtatggaggggcccccaaa-------actagaactaccatatgatccagcaatcccattactgagtatatgtccaaaggaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttgttgcagcactattcacagcagacaacatatgaaaacaatctaagtgtcccatcaatggatgaatggatagagaaaatatg----acact--ctcacac--aca------cacaatgaaa-actatcagccat--aaaaacaatgaaatactgtcatgtgcaacaacatggatgaacctggaggacattatggtaagtgaaattaaccaggcacaggaagacaaacagcacattctctcactcctatgtgaaatctaaagaagttaatctcatagaagtagagagtagaatactggctaccagaggctggggagagtgagaggaggggaggataagcagagattggtcaacaggtacaaagttacagatagataggaggggtaagtgttggtattctaatgtacagtaggatgactatggttaataatattgtatcgtatatttcaaaatagctaacagagaagattttaaatgctcttaccatgaagaaatgataaatgtatgaggtgatgaatatgctaaacaccctgacttgattattacaaaatgtatacatgtatggaaacatcacactgcaccccataaacatgtacaattatgtgt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52743613 1062 + 80997621 ggagaaaatattttcaaactatgcatctgaccaggggttaatatccagaatatataaggaacttgaacaactcaacagtgaataac-gataataaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacacacaaatggccaacacatatatgaagaagtgctcagcatcactaatcatcatgaaatgcagatcaaaaccacaa-------tgagataccatatcaccccaattagaatggctattatcaaaaatacaaaaaagtaacaaatcctggtgtggatgtggtaaaaggggagctcatacaaggttggagggaatgtaaagtagcatagccattatggaaaacagtatggagggtcccccaaa-------aatagaactaccatatgatccagcaatcccattactgagtatatgtccaaaggaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttgttgcagcactattcacagcagacaacatatgaaaacaatctaagtgtcccatcaatggatgaatggatagagaaaatatg----acact--ctcacac--aca------cataatgaaa-actatcagccat--aaaaacaatgaaatactgtcatgtgcaacaacatggatgaacctggaggacattatggtaagtgaaattaaccaggcacaggaagacaaacagcacattctctcactcctatgtgaaatctaaagaagttaatctcatagaagtagagagtagaatactggctaccagaggctggggagagtgagaggaggggaggataagcagagattggtcaacaggtacaaagttacagatagataggaggggtaagtgttggtattctaatgtacagtaggatgactatggttaataatattgtatcgtatatttcaaaatagctaacagagaagattttaaatgctcttaccatgaagaaatgataaatgtatgaggtgatgaatatgctaaacaccctgacttgattattacaaaatgtatacatgtatggaaacatcacactgcaccccataaacatgtacaattatgtgt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47746412 1065 + 74645514 ggagaaaatattttcaaactatgcatctgaccaggggttaatatccagaatatataaggaacttgaacaacTCAACAGTGAATAAT-GATGataaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacacacaaatggccaacacatATATGAAGaagtgctcagcatcactaatcatcatgaaatgcagatcaaaaccgcag-------tgagataccatatcaccccaattagaatggctattatcaaaaatacaaaaaagtaacaaATCCTGGTGTGGATGTGGTAAAAGGGGAGCTCATACAAGGTTGGAGGGAATGTAAAGTAgcatagccattatggaaaacagtatggagggtcccccaaa-------aatagaactaccatatgatccagcaatcccattactgagtatatgtccaaaggaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttgttgcagcactattcacagcagccaacatatgaaaacaatctaagtgt-ccatcaatggatgaatggatagagaaaatatgacacacact--ctcacac--aca------aacAATGAAA-ACTAtcagccat--aaaaacaatgaaatactgtcatgtgcaacaacatggatgaacctggaggacattatggtaagtgaaattaaccgggcacaggaagacaaacagCACATTCTCTCACTCCTACGTGAAATCTAAAGAAGttaatctcatagaagtagagagtagaatactggctaccagaggctggggagagtgAGAGGAGGGGAGGATAAGCAGAGATtggtcaacaggtacaaagttacagATAGATAGGAGGGATAAGTGTTGGTATTCTAATGTACAGTAGGATGACTATGGTTAGTAATATTGTAtcgtatatttcaaaatagctaacaGAGAAGATTTTAAATGCTCTTAccatgaagaaatgataaatgtatgaggtgatgaatatgctaaacACCCTGACTTGATTATTacaaaatgtatacatgtatggaaACATCACACTGCaccccataaacatgtacaattatgtgt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10010326 1064 - 75148670 ggagaaaatattttcaaactatgcatctgaccaggggttaatatccagaatatataaggaacttgaacaactcaacagtgaataac-gataataaatccaattaaaaataggtaaaagacctgaatagatatttcacaaaagaaaacacacaaatggccaacacatatatgaagaagtgctcagcatcactaatcatcatgaaatgcagatcaaaaccacaa-------cgagataccatatcaccccaattagaatggctattatcaaaaatacaaaaaagtaacaaatcctggtgtggatgtggtaaaaggggagctcatacaaggttggagggaatgtaaagtagc-tagccattatggaaaatagtatggagggtcccccaaa-------aatagaactaccatatgatccagcaatcccattattgagtatatgtccaaaagaaatgaaatc-agtatgttgaggagatatctgcacttccatgtttgttgcagcactattcacagcagccaacatatgaaaacaatctaagtgt-ccatcaatggatgaatggatagagaaaatatgacacacact--ctcacac--ata------cacaatgaaa-actatcagccat--aaaaacaatgaaatactgtcatgtgcaacaacatggatgaacttggaggacattatggtaagtgaaattaaccaggcacaggaagacaaacagcacattctctcactgctatgtgaaatctaaagaagttaatctcatagaagtagagagtagaatactggctaccagaggctggggagagtgagaggaggggaggataagcagagattggtcaacaggtacaaagttacagatagataggagggataagtgttggtattctaatgtacagtaggatgactatggttagtaatattgtatcgtatatttcaaaatagctaacagagaagattttaaatgctcttaccatgaagaaatgataaatgtatgaggtgatgaatatgctaaacaccctgacttgattattacaaaatgtatacatgtatggaaacatcacactgcaccccataaacatgtacaattatgtgt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112890427 1081 + 159171411 ggaaaaattattttcaaactttacatctgact-ggtgttaatatccagaatacatgagaaacctgaacaactcaacagtgaataatcaataataatttcaattaaaagtaggtaaaagacctgaataaatatttctcaaaagaaagcatagaaatggccaacacatatacaaagaagtgctcaacattaccaatcatcaggaaatgcaaattaaaaccacaa-------tgagatagcatatcaccccaattagaatggctattatc-aaaatatgaaaaaataacaaatgctcatgtggatgtggaaaaaaaggaactcatacaggactgtagggaatgtaaagtagcatagccattatggaaaacagtatggagggtccccccaaatttaaacatagaactactatatgatccagcaatcccactattgagtatatatccaaagcaaatgaaatc-agtatgttgaagggctatctacatttccatgtttcctgcggcacgattgacaacagccaacataccaaaacaatctaagtgt-ccatcaatggatgaatggataaagaaaatgtgacacacact--cacatacacacatacatgcacaatgaaatactatcagtcataaaaaaagaatgaaatactgtcttgtgcagcaacatggatgaacctggaggaccgtatgttaagtgaagttaaccaggcacagaaagacaaatagcacacgctctcacatctatgtgaaatctaaacaagttgatcccatagaagtagagagtagaatagttgttaccagaggctggggagggtgagagaaggagatagtagggaaagactggtcaacaggtacaaagttacaggtagataggagggatacatttcggtactctagtgtacagtggggcaactatggttagcaatattgtatcatatatttcaaaatagctctcagagaagattttaaatattcttaccattaagaaacgatgaatgtatgaggtgataaatatcctaaacaccctgatttgattattacaaaatgtatacatgtat-gaaacatcacgctgcaccccgtaaatatgtacaattatgtgt i calJac3.chr5 C 0 C 0 e canFam3.chr9 39440540 0 - 61074082 C e mm10.chr11 99602344 254 + 122082543 I a score=13447.000000 s hg38.chr17_JH159146v1_alt 195869 10 + 278131 cagttTTTTT s ponAbe2.chr17 24849366 9 - 73212453 cag-tttttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48068854 10 - 81552678 cagttTTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53179981 9 + 80904711 cag-ttttta i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52744675 9 + 80997621 cag-ttttta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47747477 9 + 74645514 cag-tttttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10011390 9 - 75148670 cag-ttTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112891508 9 + 159171411 cca-tttttt i calJac3.chr5 C 0 C 0 e canFam3.chr9 39440540 0 - 61074082 C e mm10.chr11 99602344 254 + 122082543 I e panTro4.chr17 66314988 575 - 82630442 M a score=5008.000000 s hg38.chr17_JH159146v1_alt 195879 3 + 278131 AAT s ponAbe2.chr17 24849375 3 - 73212453 aat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48068864 3 - 81552678 AAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53179990 3 + 80904711 aaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52744684 3 + 80997621 aaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47747486 3 + 74645514 aaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10011399 3 - 75148670 AAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112891517 3 + 159171411 aaa i calJac3.chr5 C 0 C 0 s mm10.chr11 99602598 2 + 122082543 -aa i mm10.chr11 I 254 C 0 e canFam3.chr9 39440540 0 - 61074082 C e panTro4.chr17 66314988 575 - 82630442 M a score=818989.000000 s hg38.chr17_JH159146v1_alt 195882 297 + 278131 TAAAAAATTAATTTAATACAAAATATTAGAATGAGTAAATAAAACCAAATC--TTTTTGCAAGGCCAAAGAACAGATATTTATTAGAAAATAAACATGCCACGAAATCT----T-------AAGAAGAAGGAAATTGCTTCTTTTAC--AGACTTCAGAATGGCCCAGGTCTTAATAGATGAGCCCAGTGCTCGGTTCCCTGCTTGGTTGATGTGGGGTTTTGTGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAATGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTACGCGTTCCGGGCAGTCAGTGCA s ponAbe2.chr17 24849378 299 - 73212453 taaaaaattaatttaatacaaaatattaGAATGAGGAAATAAAACCAAAGC--TTTTTGCAAGGCCGAAGAACAGATATTTATTAGAAAATAAACATGCCACGAAATCT----T-------AAGAAGAAGGAAATTGCTTCTTTTACAAAGACTTCAGAATGGCCCAGGTCTTAATAGATGAGCCCGGTTCTCGGTTCCCAGCTTGGTTGATGTGGGGTTTTGTGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAATGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTACGCGTTCCGGGCAGTCAGTGTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48068867 303 - 81552678 TAAAAAATTAATTTAATACAAAATATTAGAATGAGTAAATAAAACCAAAGC--TTTTTGCAAGGCCAAAGAACAGATATTTATTAGAAAATAAACATGCCACGAAATCTTAGAT-------AGGAAGAAGGAAATTGCTTCTTTTACAAAGACTTCAGAATGGCCCAGGTCTTAATAGATGAGCCCGGTTCTCGGTTCCCAGCTTGGTTGATGTGGGGTCTTGTGGGCTCAGGGCAGGAGGTTTGTTAAGGTAGAGAAATCGGAGTGTGAC--TTTTTCAGAAGGTGAGTTACGCGTTCCGGGCATTCAGTGCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53179993 301 + 80904711 ttaaaaGTTAATTTAATACAAAACATTAGAATGAGTAAATAAAACCAAAG---TTTTTGCAAGACCAAAGAACAGATATTTATTAGAAAATAAACATGCCACAAAATCTTAGAT-------AGGTAGAAGGAAATTGCTTCCTTTACAAAGACTTCAGAAGGGCCCAGGTCTTAAT-GATGAGCCCGGTTCTCGGTTCCCAGCTTGGTTGATGTGGGGTCTTGCGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAACGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTGCATGTTCCGGGCAGTCAGTGAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52744687 301 + 80997621 ttaaaaGTTAATTTAATACAAAACATTAGAATGAGTAAATAAAACCAAAG---TTTTTGCAAGACCAAAGAACAGATATTTATTAGAAAATAAACATGCCACAAAATCTTAGAT-------AGGTAGAAGGAAATTGCTTCCTTTACAAAGACTTCAGAAGGGCCCAGGTCTTAAT-GATGAGCCCGGTTCTCGGTTCCCAGCTTGGTTGATGTGGGGTCTTGCGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAACGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTGCATGTTCCGGGCAGTCAGTGAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47747489 301 + 74645514 tcaaaagttaatttaatacaaaacattagaatgagtaaataaaaccAAAG---TTTTTGCAAGACCaaagaacagatatttattagaaaataaacatgCCACAAAATCTTAGAT-------AGGAAGAAGGAAATTGCTTCCTTTACAAAGACTTCAGAAGGGCCCAGGTCTTAAT-GATGAGCCAGGTTCTCAGTTCCCAGCTTGGTTGATGTGGGGTCTTGCGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAACGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTGCATGTTCCGGGCAGTCAGTGCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10011402 301 - 75148670 TTAAAAGTTAATTTAATACAAAACATTAGAATGAGTAAATAAAACCAAAG---TTTTTGCAAGACCAAAGAACAGATATTTATTAGAAAATAAACATGCCACAAAATCTTAGAC-------AGGAAGAAGGAAATTGCTTCCTTTACAAAGACTTCAGAAGGGCCCAGGTCTTCAT-GATGAGCCCGGTTCTCGGTTCCCAGCTTGGTTGATGTGGGGTCTTGCGGGCTCAGGGCAGGAGGTTTGTTAAAGTAGAGAAACGGGAGTGTGAC--TTTTTCAGAAGGTGAGTTGCATGTTCCGGGCAGTCAGTGCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112891520 298 + 159171411 taaaaAATACATTTAATACAAAATATTAGAATGAGTAAATAAAACCAAAGC--TTTTTGCAAGGTCAAAGAACAGATATTTATTAGAAAGGAAACATGCCACAAAATCTTAGAT-------GGGAGGAAGGAAATTGCT---TTTACAAAGGCTGCAGAATGGCCCAGGTTTTAATAGATGAGCCCGGTTCTCGG-TCCCAGCTTGGTTGATGTGGGATCTTGCAGGCTCAGGGCAGGAGGTTTGTT-AGGCAGAGAAATGGGAGTGTGGC--TTTTTCAGAAGGTGACTTGCGTGCTCCAGGCAGTCAGTGTA i calJac3.chr5 C 0 C 0 s mm10.chr11 99602600 267 + 122082543 TTAAAAAT--ATTT--TAAAAGGCACACGGAAGAACAATCAAAGCAA----------TGTGAGGCCCAAGAAGTGAAATTTATTTTTAAATGAATATGATCCAAGACTTTAGACCCAAGAGAGAAAGAAGGACACAGA--CAGCTATAAAGACTT-------GCACAAGTCTT-----------CTGGGCCTCCATTCACAAGCTGGCTGATTTAGGAT------GGCTCAGGGCAGGAGTTT-----ACAAGAAGAAACTGGAACATGACTATTTTCTAAAGGATGACT--CTTGCCCCAGGTGCTCAGCTCA i mm10.chr11 C 0 C 0 s canFam3.chr9 39440540 309 - 61074082 TAAAAAATAAACTTAATGAAAAAAATTAGAATGAACAAGTAAAACCAAAAATGTATTTTCTAGGCCAAAGATGAGAAGTTTATTAGAAAAGAAGCATGCCACAAGATCTAAGATCTACAGTGGGAAGAAGGGAGTTGATAGTGTTACAAAGACTTGAGAACAGCCCAAGTCTTAATAAGTGAGCCTGTATTTCCATTCAACCTCTGGTTGACTTGGGGTCTTGATAGTTCAGGGCAGGAGGTTTGTT-AGGTAGAG--ATGGGAGTACTAC--GTTTTCAGAAAGTTGATAGCTTGTTCTAGACAGTCGGTACA i canFam3.chr9 C 0 C 0 e panTro4.chr17 66314988 575 - 82630442 M a score=24370.000000 s hg38.chr17_JH159146v1_alt 196179 5 + 278131 CTGCT s panTro4.chr17 66315563 5 - 82630442 CTGCT i panTro4.chr17 M 575 C 0 s ponAbe2.chr17 24849677 5 - 73212453 CTGCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48069170 5 - 81552678 CTGCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53180294 5 + 80904711 CTGCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52744988 5 + 80997621 CTGCT i macFas5.chr16 C 0 I 6087 s papAnu2.chr16 47747790 5 + 74645514 CTGCT i papAnu2.chr16 C 0 I 6121 s chlSab2.chr16 10011703 5 - 75148670 CTGCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112891818 5 + 159171411 CTGCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99602867 5 + 122082543 CTGCT i mm10.chr11 C 0 C 0 s canFam3.chr9 39440849 5 - 61074082 CTTCT i canFam3.chr9 C 0 C 0 a score=25011.000000 s hg38.chr17_JH159146v1_alt 196184 6 + 278131 CAGCAG s panTro4.chr17 66315568 6 - 82630442 CAGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24849682 6 - 73212453 CAGCAG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53180299 6 + 80904711 CAGCAG i rheMac3.chr16 C 0 I 6004 s macFas5.chr16 52751080 6 + 80997621 CAGCAG i macFas5.chr16 I 6087 C 0 s papAnu2.chr16 47753916 6 + 74645514 CAGCAG i papAnu2.chr16 I 6121 C 0 s chlSab2.chr16 10011708 6 - 75148670 CAGCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112891823 6 + 159171411 CAGCAG i calJac3.chr5 C 0 I 3 s mm10.chr11 99602872 6 + 122082543 CAGCAG i mm10.chr11 C 0 I 6934 s canFam3.chr9 39440854 6 - 61074082 TAGCAG i canFam3.chr9 C 0 I 3 e nomLeu3.chr19 48069175 0 - 81552678 C a score=120483.000000 s hg38.chr17_JH159146v1_alt 196190 41 + 278131 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCC s panTro4.chr17 66315574 41 - 82630442 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24849688 41 - 73212453 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCC i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53186309 41 + 80904711 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCC i rheMac3.chr16 I 6004 C 0 s macFas5.chr16 52751086 41 + 80997621 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGTGTCGGCTGGCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47753922 41 + 74645514 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCC i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112891832 41 + 159171411 GGGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCC i calJac3.chr5 I 3 I 9234 s mm10.chr11 99609812 41 + 122082543 GGGGAGGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCA i mm10.chr11 I 6934 C 0 s canFam3.chr9 39440863 41 - 61074082 GGGGAGGTCCTGCAGGTGGTGCGGCAGGGGGCAGGCTGGCA i canFam3.chr9 I 3 C 0 e chlSab2.chr16 10011714 0 - 75148670 C e nomLeu3.chr19 48069175 0 - 81552678 C a score=22780.000000 s hg38.chr17_JH159146v1_alt 196231 7 + 278131 GCAGGGG s panTro4.chr17 66315615 7 - 82630442 GCAGGGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24849729 7 - 73212453 GCAGGGG i ponAbe2.chr17 C 0 I 7678 s rheMac3.chr16 53186350 7 + 80904711 GCAGGGG i rheMac3.chr16 C 0 I 15 s macFas5.chr16 52751127 7 + 80997621 GCAGGGG i macFas5.chr16 C 0 I 15 s papAnu2.chr16 47753963 7 + 74645514 GCAGGGG i papAnu2.chr16 C 0 I 15 s calJac3.chr5 112901107 7 + 159171411 GCAGGGG i calJac3.chr5 I 9234 C 0 s mm10.chr11 99609853 7 + 122082543 GCAAGGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39440904 7 - 61074082 GCAGGAG i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10011714 0 - 75148670 C e nomLeu3.chr19 48069175 0 - 81552678 C a score=3600.000000 s hg38.chr17_JH159146v1_alt 196238 1 + 278131 G s panTro4.chr17 66315622 1 - 82630442 G i panTro4.chr17 C 0 I 120 s ponAbe2.chr17 24857414 1 - 73212453 G i ponAbe2.chr17 I 7678 C 0 s rheMac3.chr16 53186372 1 + 80904711 G i rheMac3.chr16 I 15 C 0 s macFas5.chr16 52751149 1 + 80997621 G i macFas5.chr16 I 15 C 0 s papAnu2.chr16 47753985 1 + 74645514 G i papAnu2.chr16 I 15 C 0 s calJac3.chr5 112901114 1 + 159171411 G i calJac3.chr5 C 0 C 0 s mm10.chr11 99609860 1 + 122082543 G i mm10.chr11 C 0 I 15 s canFam3.chr9 39440911 1 - 61074082 G i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10011714 0 - 75148670 C e nomLeu3.chr19 48069175 0 - 81552678 C a score=63735.000000 s hg38.chr17_JH159146v1_alt 196239 23 + 278131 ---------------ACTGCACAGACACAGGCTGGCAG s panTro4.chr17 66315743 23 - 82630442 ---------------ACTGCACAGACACAGGCTGGCAG i panTro4.chr17 I 120 C 0 s ponAbe2.chr17 24857415 23 - 73212453 ---------------ACTGCACAGACACAGGCTGGCAG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53186373 23 + 80904711 ---------------ACTGCACAGACACAGGCTGGCAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52751150 23 + 80997621 ---------------ACTGCACAGACACAGGCTGGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47753986 23 + 74645514 ---------------ACTGCACAGACACAGGCTGGCAG i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112901115 23 + 159171411 ---------------ACTGCACTGACACAGGCTGGCAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99609876 23 + 122082543 ---------------CCTGCACTGAGATGGGCTGGCAG i mm10.chr11 I 15 T 7021 s canFam3.chr9 39440912 38 - 61074082 GGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAG i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10011714 0 - 75148670 C e nomLeu3.chr19 48069175 0 - 81552678 C a score=28004.000000 s hg38.chr17_JH159146v1_alt 196262 9 + 278131 CAGGTGGTG s panTro4.chr17 66315766 9 - 82630442 CAGGTGGTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857438 9 - 73212453 CAGGTGGTG i ponAbe2.chr17 C 0 T 105 s rheMac3.chr16 53186396 9 + 80904711 CAGGTGGTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52751173 9 + 80997621 CAGGTGGTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47754009 9 + 74645514 CAGGTGGTG i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112901138 9 + 159171411 CAGGTGGTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99602878 9 + 122082543 CAGGTGTTG i mm10.chr11 T 7021 C 0 s canFam3.chr9 39440950 9 - 61074082 CAGGTGGAG i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10011714 0 - 75148670 C e nomLeu3.chr19 48069175 0 - 81552678 C a score=2800.000000 s hg38.chr17_JH159146v1_alt 196271 1 + 278131 G s panTro4.chr17 66315775 1 - 82630442 G i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857342 1 - 73212453 G i ponAbe2.chr17 T 105 C 0 s rheMac3.chr16 53186405 1 + 80904711 G i rheMac3.chr16 C 0 T 6101 s macFas5.chr16 52751182 1 + 80997621 G i macFas5.chr16 C 0 I 5058 s papAnu2.chr16 47754018 1 + 74645514 G i papAnu2.chr16 C 0 I 5062 s calJac3.chr5 112901147 1 + 159171411 G i calJac3.chr5 C 0 I 1 s canFam3.chr9 39440959 1 - 61074082 G i canFam3.chr9 C 0 C 0 e mm10.chr11 99602887 0 + 122082543 C e chlSab2.chr16 10011714 0 - 75148670 C e nomLeu3.chr19 48069175 0 - 81552678 C a score=-1470.000000 s hg38.chr17_JH159146v1_alt 196272 2 + 278131 -CT s panTro4.chr17 66315776 2 - 82630442 -CT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857343 2 - 73212453 -CT i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52756241 2 + 80997621 -CT i macFas5.chr16 I 5058 T 11250 s papAnu2.chr16 47759081 2 + 74645514 -CT i papAnu2.chr16 I 5062 T 11288 s calJac3.chr5 112901149 1 + 159171411 -C- i calJac3.chr5 I 1 C 0 s canFam3.chr9 39440960 2 - 61074082 CC- i canFam3.chr9 C 0 I 6152 e mm10.chr11 99602887 0 + 122082543 C e chlSab2.chr16 10011714 0 - 75148670 C e rheMac3.chr16 53186406 6101 + 80904711 T e nomLeu3.chr19 48069175 0 - 81552678 C a score=8148.000000 s hg38.chr17_JH159146v1_alt 196274 3 + 278131 CAG s panTro4.chr17 66315778 3 - 82630442 CAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857345 3 - 73212453 CAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48069175 3 - 81552678 CAG i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52744993 3 + 80997621 CAG i macFas5.chr16 T 11250 C 0 s papAnu2.chr16 47747795 3 + 74645514 CAG i papAnu2.chr16 T 11288 C 0 s calJac3.chr5 112901150 3 + 159171411 CAG i calJac3.chr5 C 0 T 9324 s canFam3.chr9 39447114 3 - 61074082 CAG i canFam3.chr9 I 6152 T 6257 e mm10.chr11 99602887 0 + 122082543 C e chlSab2.chr16 10011714 0 - 75148670 C e rheMac3.chr16 53186406 6101 + 80904711 T a score=8764.000000 s hg38.chr17_JH159146v1_alt 196277 3 + 278131 CAG s panTro4.chr17 66315781 3 - 82630442 CAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857348 3 - 73212453 CAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48069178 3 - 81552678 CAG i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52744996 3 + 80997621 CAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47747798 3 + 74645514 CAG i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112891829 3 + 159171411 CAG i calJac3.chr5 T 9324 C 0 s mm10.chr11 99602887 3 + 122082543 CAT i mm10.chr11 C 0 C 0 s canFam3.chr9 39440860 3 - 61074082 CAG i canFam3.chr9 T 6257 C 0 e chlSab2.chr16 10011714 0 - 75148670 C e rheMac3.chr16 53186406 6101 + 80904711 T a score=219207.000000 s hg38.chr17_JH159146v1_alt 196280 48 + 278131 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGG s panTro4.chr17 66315784 48 - 82630442 GAGTAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857351 48 - 73212453 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGG i ponAbe2.chr17 C 0 T 7663 s nomLeu3.chr19 48069181 48 - 81552678 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGACCGCAGGGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53180305 48 + 80904711 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGG i rheMac3.chr16 T 6101 C 0 s macFas5.chr16 52744999 48 + 80997621 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47747801 48 + 74645514 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10011714 48 - 75148670 GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112891832 48 + 159171411 GGGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCCGCAGGGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99602890 48 + 122082543 GGGGAAGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCAGCAAGGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39440863 48 - 61074082 GGGGAGGTCCTGCAGGTGGTGCGGCAGGGGGCAGGCTGGCAGCAGGAG i canFam3.chr9 C 0 C 0 a score=2647767.000000 s hg38.chr17_JH159146v1_alt 196328 610 + 278131 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTGGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCCGGGTGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTTTGTTTTGACTAATGG------TTGCTTGTGACACACTCATTA-TCTCACTAAAGAGCTCTTGTTTTATCTCTAAGTATGGATG---TACTCACATTG-----GGTGAAAATC-TAAGAACTCATCGTCATTTGAGGTGATAG s panTro4.chr17 66315832 610 - 82630442 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAACAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGCCTCCCCCATAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTATTCTCGGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCCGGGTGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTTTGTTTTGACTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTTTATCTCTAAGTATGGATG---TACTCACACTG-----GGTGAAAATC-TAAGAACTCATCGTCATTTGAGGTGATAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24849736 610 - 73212453 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGCCAGCAGCAGGGCTGGCAGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCCGGGTGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTTTGTTTTGACTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTTTATCTCTAAGTATGGATG---TGCTCACACTG-----GGTGAAAATC-TAAGAACTCATCGTCATTTGAGGTGATAG i ponAbe2.chr17 T 7663 C 0 s nomLeu3.chr19 48069229 610 - 81552678 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCATGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTGACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGCCTCCCCCATAGCTCAGGCAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCGGGTGTGAATGTCCTCGTTCCATTCTGGGCCCTTTATATACCTTGGCCGGGTGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTTTGTTTTGACTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTGCATCTCTAAGTATGGATG---TACTCACACTG-----GGTGAAAATC-TAAGAACTCATCATCATTTGAGGTGATAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53180353 610 + 80904711 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCCAGGGGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTCTGTTTTGGCTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTGCATCTCTAAGTATGGATG---TACCTACACCG-----TGTGAAAATC-TAAGAACTCATCGTCATTTGAGGTGATAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52745047 610 + 80997621 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCCAGGGGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTCTGTTTTGGCTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTGCATCTCTAAGTATGGATG---TACCTACACCG-----TGTGAAAATC-TAAGAACTCATCGTCATTTGAGGTGATAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47747849 610 + 74645514 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAACAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAggagccggtcatggtggtgtcTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCCAGGGGCAGGTGA---CCCTTTTCGTTTACCTTTTGGCCAATTAAGTAGAATTCTGTTTTGGCTAATGG------TTGCTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTGCATCTCTAAGTATGGATG---TA-CTACACGG-----TGTGAAAATCTTAAGAACTCATCGTTATTTGAGGTGATAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10011762 611 - 75148670 GGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAACGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAACAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCCGCAGCCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCCCGCCCTTTATATACCCTGGCCAGGGGCAGGTGA---TCCTTTTCGTTTACCTTTTGGCCAATTAAATAGAATTCTGTTTTGACTAATAG------TTGTTTGTGACACACTCATTA-TCTCATTAAAGAGCTCTTGTTGCATCTCTAAGTATGGATG---TACCTACACGG-----TGTGAAAATCTTAAGAACTCATCGTTGTTTGAGGTGATAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112891880 610 + 159171411 GGCCGGCAGCAGGGGGACTGCACTGACACAGGCTGGCAGCAGGTGGTGGTCCAGCAGCAGGGCCTGCAGACCACAGAGGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACTGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGCCTCCCCCGCAGCTCAGGGAGGAGAAGGTGGATCCGCAGCAGGAGCCGTACATGGTGGTGTCTGAGACTGGTGTGGGG-AGGGCTGTTGAGAGGAGCTGGTTGTTCTCAGGTGTGAATGTCCTCCTCCCTCTCTGGGCTCTTTATATACCCTGGCCTGGTGCAGGTGA---CCCCTTTTGTTTACCTTTTGGCCAATTAAGTAGAATTTTGTTTTGACTAATGG------TTGCTTGTGACACTCTCATTA-GCTCATTAAAGAGCTCTTGTCACATCTCCAAGTATGGATG---TAGTCACACTG-----TGTGAAAATC-TAAGAACTCATCATCATTTGATGTGATAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99602938 597 + 122082543 GGCCTGCAGCAGGGAGCCTGCACTGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAAGGCCTGCAGACCACAGCTGTGCAAGAGGTGGGGCAGCAGGTGATGGGGCGACAGCAGCCCTGCTGCAGGCTGCAGGGGTCACAGCAGATGGGGCGGCGACAGGGCTCACAGATGGGCCTGGTGCAATGGGGCACACAGGTCACAGGGCGACACACTGTGGTCTGGCAGGACACTGGGCGGCAGCAGCAGGGGTCCCTGCAGCAGCAGGGCTGGCAGCAGCCTCCTCCACAGCTCTGGGAGGAGAA---GGATCCACAGCAGGAGCCTGTCATGGTTGTGTCTG-GGCTGGAGTGGGGCTGAGAAGTGAAGAGAGGTTGGGAGTTCTCAGGTGTG-ATGT-CTCCTCTGGGTCGGGTCCCTTTATATACCT-------GTGCTGATGA---CACCTCTTGTTTATCTTTTGACTAATTAAGCC-AATGTCTCTTTGGCTAATGG------TTGAGT------CATTGATTGCCCTCATTAAGTAATTCTCATTGCATCTCTAAATATGAACATCTTACACTCACTGTTCATTGTGGAAA-C-TTGGAAATTACAGCTA--TGAGGTGATAG i mm10.chr11 C 0 I 349 s canFam3.chr9 39440911 624 - 61074082 GGGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAGGGGCGGCAGACCACGGCAGTGCAGGACGTGGGGCAGCAGCTGATGGGGCGGCAGCAGCCCTCCTGCAGGGAGCAGGGGTCACAGCACACAGGGCGGCGGCAGGGCTCACAGATGGGGCGCGTGCAGCGGCAGGTGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGCTCACGGGGCGACAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCATTCTGTGCCACAGCCCTGGGAGGAGCAGATGGAACCACAGCAGGAGCCGGACATGGTGATATGTGGGGCTGTTTAGGTT-TGGACTGGTGAGAGGATTTGGATGTTGTCAGGTGAGAATGTCTTTGTCCTGCTTTGGGCCCTTTATATATCCTGCCCAGGTGCTGATGACACCCCCCCCCATTTATCTTTTGGCCAATTAAGTAGGATTTTGTTTTGACTAAATGATTGCATTGCTTGTGACATACTCATGA-TCTCATTAAAGAACTCTTGTTGCATTCCTAAATATGGATA---TATACATGCTGTTCATCATCAAAATC-TAAGCACTCACAGTCATTTTAGGTGAGAG i canFam3.chr9 C 0 C 0 a score=307015.000000 s hg38.chr17_JH159146v1_alt 196938 98 + 278131 TAGCTCTTGATGCTTATTTTGAGTAGATAA-CACTGGATCAAATCTGGACAAAACGGT-CTAAAAAAACTTCAGTTTTTAAAAGAAATTAAAAACATAGA s panTro4.chr17 66316442 97 - 82630442 TAGCTCTTGATGCTTATTTTGAGTAGATAA-CACTGGATCAAATCTGGACAAAACGGT-CT-AAAAAACTTCCGTTTTTAAAAGAAATTAAAAACATAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24850346 96 - 73212453 TAGCTCTTCATGCTTATTTTGAGTAGACAG-CACTGGATCAAATCTGGACAAAACGGT-CTAAAAAAACTT--GTTTTTAAAATAAATTAAAAACATAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48069839 98 - 81552678 TAGCTCTTGATGCTTATTTTGAGTAGATAG-CACTGGATCGAATCTGGACAAAACGGT-CTAAAAAAACTTCAGTTTTTTAAAGAAATTAAAAACATAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53180963 98 + 80904711 TAGCTCTCGATGCTTATTTTGAGTAGATAG-CACTGGATCAAATCCGGACAAAATGGT-CTAAAAACTTTTCAGTTTTAAAAAGAAATTATAAACATAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52745657 98 + 80997621 TAGCTCTCGATGCTTATTTTGAGTAGATAG-CACTGGATCAAATCCGGACAAAATGGT-CTAAAAACTTTTCAGTTTTAAAAAGAAATTATAAACATAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47748459 98 + 74645514 TAGCTCTCGATGCTTATTTTGGCTAGATAG-CGCTGGATCAAATCCGGACAAAATGGT-CtaaaaaattttcagttttaaaaagaaattataaacataGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10012373 98 - 75148670 TAGCTCTCGATGCTTATTTTGAATAGATAA-CACTGGATCAAATCTGGACAAAATGCT-CTAAAAAATTTTCAGTTTTTAAAAGAAATTATAAACATAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112892490 98 + 159171411 CAGCTCTTGATGCTTACTTTGAGTAGATAG-CACTGGACTGAATCTAGACAAAATGGT-CTAAAAACACTTCAGTTTTAAAAAGAAATTAAAAATATAGA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39441535 100 - 61074082 CAGCTCTTGATGCATATTTTGGGTAGATAACCACCTGATGAATCTTGGAGAAAATGATCCTAAAAGAACTGCAAGTTTTAAAATAAATCAAATATATAGG i canFam3.chr9 C 0 C 0 e mm10.chr11 99603535 349 + 122082543 I a score=607335.000000 s hg38.chr17_JH159146v1_alt 197036 190 + 278131 GAAGTACATAGAACATTGAGTAGAGCCTAT-CCTGACCCCAATAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAACGTGAATCACACGAGTGTTAGACAAGCCCTCCCACGTAGTCTGCTTGGG-AATACGTTTGATTATCACTTGATATAGTGGGATACATAGGCCTTGAATAGGATAGCAGCTCA s panTro4.chr17 66316539 189 - 82630442 GAAGTACATAGAACACTGAGTAGAGCCTAT-CCTGACCCCAATAGGGGACTC---AAGTCCTTGGAAGCACCTACAT-TGAAACGTGAATCACACGAGTGTTAGACAAGCCCTCTCATGTAGTCTGCTTGGG-AATACGTTTGATTATCACTTGATATAGTGGGATACATAGGCCTTGAATAGGATAGCAGCTCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24850442 190 - 73212453 GAAGTACATAGAACACTGAGTAGAGCCTGT-CCTGACCCCAATAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAATGTGAATCACACGAGTGTTAGACAAGCCCTCCCATGTAGTCTGCTTGGG-AATATGTTTGATTATCACTTGATATAGTGGGATACATAGGCCTTGAATAGGATAGCAGCTCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48069937 190 - 81552678 GAAGTACATAGAACACTGAGTAGAGCCTAT-CCTGACCCCAGTAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAACGTGAATCACATGAGTGTTAGACAAGCCCTCCTGTGCAGTCTGCTTAGG-AATATGTTTGATTATCACTTGATATAGTGGGATACACAGGCCTTGAATAGGATAGCAGCTCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53181061 186 + 80904711 GGAGTACATAGAACACTGAGTAGAGCCTAT-CCCGACCCCAGCAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAAAGTGAATCACACGAGTGTTAGACAAGACCTCCCATGTAGTCTGCTTGGG-AATATGT----TTATCACTTGAAGTAGTGGGATACATAGGCCTTGAATAGGATAGTAGCTCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52745755 186 + 80997621 GGAGTACATAGAACAGTGAGTAGAGCCTAT-CCCGACCCCAGCAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAAAGTGAATCACACGAGTGTTAGACAAGACCTCCCATGTAGTCTGCTTGGG-AATATGT----TTATCACTTGAAGTAGTGGGATACATAGGCCTTGAATAGGATAGTAGCTCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47748557 186 + 74645514 GGAGTACATAGAACACTGAGTAGAGCCTAT-CCTGACCCCAGCAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAAAGTGAATCACACGAGTGTTAGACAAGACCTCCCATGTAGTCTGCTTGGG-AATATGT----TTATCACTTGAAATAGTGGGATACATAGGCCTTGAATAGGATAGTAGCTCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10012471 186 - 75148670 GGAGTACATAGAACACTGAGTAGAGCCTAT-CCCGACCCCAGCAGGGGACTC---AAGTCCTTGGAAGCACCTACATGTGAAAAGTGAATCACACGAGTGTTAGACAAGACCTCCCATGTGGTCTGCTTGGG-AATATGT----TTATCACTTGAAGTAGTGGGATACATAGGCCTTGAATAGGAGAGTAGCTCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112892588 186 + 159171411 GGAGTACAT-----ACTGACTAGAACCTAT-CCTGACCCCAGCAGTGAACTCAGTAAGTCCTTGGAAGCACCTACATGTGAAAAGTGAATCATACAAGTGTTAGACAAGCCGTCTAATGTAGTCTGCTTGGG-AAT--GTTTGATTATCACTTGATGTAGTAGGATACCTATGCCTTGAATGGGATAGCAGCTCA i calJac3.chr5 C 0 C 0 s mm10.chr11 99603884 173 + 122082543 GAGATGCAGAGATCATGGACTGGATCCTTC-TC---CCTTAATG-----------AGTACCCTGGAAGCATGTGTCC-------ATAAACCAAACAGGCACTAGACACATTGTTTTATATGGGATTCTTTGACAATATATTTATTTACTGTTTGGTACAAGATAATACAAATTCCTCAGCTAGAACAGCAGCTCA i mm10.chr11 I 349 I 2980 s canFam3.chr9 39441635 172 - 61074082 --GGTTTCTAGAGTACTGACTGGATCTTGTATTTGACTCT--TAGGAG-------ATGCCCTGAGAA--ACCTGTAT-------GTGAATCAGACAGGTATTAGACATGTCCTTGGGTGTAGACTCCTTAGG-ACTTTATTGACCTATCACTTGA--TAATGGAATGCATGTACCTTGAATAAGACTGCAGCTCA i canFam3.chr9 C 0 C 0 a score=832293.000000 s hg38.chr17_JH159146v1_alt 197226 258 + 278131 TAGAGTTGTACAGGACAGACAAAA----ATTTTTGCAAACCA-CTAAGTGTTGGAATAAAACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTTCA-GGTTCTGTGCAACTCTGGTCTTTCT-GTCATAAGATGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCGTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTGAATATACCTTGTTggccgggcgcagtggctcatgcctgt s panTro4.chr17 66316728 259 - 82630442 TGGAGTTGTACAGGACAGACAAAA----ATTTTTGCAAACCA-CTAAGTATTGGAATAAAACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTTCA-GGTTCTGTGCAACTCTGGTCTTTCTGGTCATAAGATGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCGTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTGAATATACCTTGTTggccgggcacagtggctcacgcctgt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24850632 259 - 73212453 TAGAGTTGTACAGGACAGACAAAA----ATTTTTGCAAACCA-CTGAGTATTAGAATAAAACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTTCA-GGTTCTGTGCATCTCTGGTCTTTCTGGTCGTAAGATGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATAGGAAATTTTTCTGAATATACCTTGTCggccgggcacagtggctcacccctgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48070127 259 - 81552678 TAGAGTTGTACAGGACACACAAAA----ATTTTTGCAAACCA-CTAAGTATTGGAATAAAACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTTCA-GGTTGTGTGCAACTCTGGTCTTTCTGGTCATAAGATGATGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTGAATATACCTTGTCggccgggcacagtggctcacacctgt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53181247 260 + 80904711 TCTAGTTTTACAGGACAGATGAAA----ATTTTTGCAAGCCA-CTAAGTATTGGAATAATACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTACATGGTTCTGTGCAACTCTGGTCCTTCTGCTCATAAGGTGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTTAATATACCTTGACAgctgggcgcagtggctcatgcctgt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52745941 260 + 80997621 TCTAGTTTTACAGGACAGATGAAA----ATTTTTGCAAGCCA-CTAAGTATTGGAATAATACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTACATGGTTCTGTGCAACTCTGGTCCTTCTGCTCATAAGGTGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTTAATATACCTTGACAgctgggcgcagtggctcatgcctgt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47748743 260 + 74645514 TCTAGTTTCACAGGACAgatgaaa----atttttgcaagccA-CTAAGTATTGGAATAATACCTCCAAGCCTGCcttgcatg-------ttttcttttctctagtacACGGTTCTGTGCAACTCTGGTCCTTCTGCTCATAAGGTGCTGCTTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGggaaatttttcttaatataccttgacagccgggcgcagtggctcatgcctgt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10012657 260 - 75148670 TCTAGTTTTACAGGATCGATAAAA----ATTTTTGCAAGCCA-CTAAGTATTGGAATAATACCTCCAAGACTGCCTTGCATG-------TTTTCTTTTCTCTAGTACATGGTTCTGTGCAACTCTGGTCCTTCTGGTCATAAGGTGCTGCTTTTTATCTCTGAAACATGTCA---TTTTTTAGCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTGTAATGGGAAATTTTTCTTAACATACCTTGACAgccgggcgcagtggctcatgcctgt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112892774 257 + 159171411 TATAGTTGTACAGAGCAGACAAAAGTTTATTTTTGCAAACCA-CTAAATACTGGAATAAAACCCCCAAGACTGCCTTGCATG------------TTTTCTCTAGTTCA-GGTTCTGTGCACCTCTGGTCCTTCTGGTCATAAGATGCTGATTTTTATCTCTGAAACATGTCA---TTTTTTATCCTTGCCTTTCTTGTGCATGTAATGAAGAATTCTCTAATGGGAATTTTTTCTTAATATACCTT-ATggccaggcacagtggctcatgcctgt i calJac3.chr5 C 0 C 0 s canFam3.chr9 39441807 260 - 61074082 GATAACTTGTTGGGAAAGATAAAAGGTTATTTTTGTAAAACAGCTAAGAATTGGAATAAAATATCCACAGCTGCCCTCCATTGTTTTTCTTTTCTTTTCTTCTGTTCA-GGCT-TGAGCAACTGTGGTCCTTCTGGCTACAGAATGTTGATTTTTATCTCTGAGACATGACATTTTTTTTTATATTTGCCTTTCTTGTGTATATGATAAAGAATCATGTAATGggg-------------atccctgggtggcgcaacggtttggcacctgccttt i canFam3.chr9 C 0 I 141 e mm10.chr11 99604057 2980 + 122082543 I a score=703671.000000 s hg38.chr17_JH159146v1_alt 197484 237 + 278131 aatcccaacacctggggaggccaaggcaggtggatcacctgagctcaggagttcaagaccaccctgggcaacatggtgaaacctcaactctaataaaatacaaaaaattagctgggtgtggtggca-gtgcctgtagtcccagctgtgccggaggctggggaacgagaatcacttgagccccaaaggcggaggttgcagtgagccgagatcatgccattgcactccagcttgggctac s panTro4.chr17 66316987 238 - 82630442 aatcccaacacttggggaggccaaggcaggtggatcacctgagctcaggatttcaagaccaccctgggcaacatggtgaaacctcaactctaataaaatacaaaaaattagctgggtgtggtggcaggtgcctgtagtcccagctgtgccggaggctggggaacgagaatcacttgagccccaaaggcggaggttgcagtgagccgagatcatgccattgcactccagcttgggctac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24850891 238 - 73212453 aatcccaacacttggggaggccaaggcaggtggatcacctgagctcaggagttcaagaccaccctgggcaacatggtgaaacctcaactctaataaaatacaaaaaactagccgggtgtggtggcaggtgcctgtagtcccagctatgcaggaggctggggaatgagaatcacttgagccccagaggcggaggttgcagtgagccgagatcatgccactgcactccaggttgggctac i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48070386 238 - 81552678 aatcccaacacttggggaggccaaggcaggtggaccacctgagcctgggagttcaagaccaccatgggcaacatggtgaagcctcaactctaataaaatacaaaaaattagccgggtgtggtggcaggtgcctgtagtcccagctatgcgggaggctggggaacgagaatcacttgagccccagaggtggaggttgcagtgagctgagatcatgccactgcactccagcttgggctac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53181507 238 + 80904711 aatcccaacacttggggaggctgaggcaggcagatcacctgagctcaggagttcaagaccaccctgggcaatatggtgaaaccccaactctaataaaatacaaaaaattagccaggtgtggtggtgggtgcctgtagtcctagctatgcaggaggctggggaacgagaatcacttgagccccagaggcggaggttgcagtgagccaagatcatgccacagaactccagcttgagctgc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52746201 238 + 80997621 aatcccaacacttggggaggctgaggcaggcagatcacctgagctcaggagttcaagaccaccctgggcaatatggtgaaaccccaactctaataaaatacaaaaaattagccaggtgtggtggtgggtgcctgtagtcctagctatgcaggaggctggggaacgagaatcacttgagccccagaggcggaggttgcagtgagccaagatcatgccacagaactccagcttgagctgc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47749003 238 + 74645514 aatcccaacacttggggacgctgaggcaggcagatcacctgagctcaggagttcaagaccgccctgggcaatatggtgaaacctcaactctaataaaatacaaaaaattagccaggtgtggtggtgggtgcctgtagtcctagctatgcaGAAGGCTGGggaacgagaatcacttgagccccagaggcggaggttgcagtgagccaagatcatgccacagaactccagcttgagctac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10012917 238 - 75148670 aatcccaacacttgtggaggctgaggcaggcagatcacctgagctcaggagttcaagaccgccctgggcaatatggtgaaacctcaactctaataaagtacaaaaaattagccaggtgtggtggtgggtgcctgtagtcctagctatgcaggaggctggggaatgagaatcacttgagccccagaggcggaggttgcagtgagccaagatcatgccacagaactccagcttgagctac i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112893031 237 + 159171411 aatcccaagattttgggagaccgaggcaggcagactgcctgagctcaggagtttgagaccacc-tgggcaacatggtgaaaccctgattctaataaaatgcaaaaaattagttgggcatggtgatgggtgcctgtagtcccagctatgcaagaggctgagacacgagaatcacttgagacctggaggtggaggctgcagtgggcagagatcacatcactgcactccagcttgagctac i calJac3.chr5 C 0 C 0 e canFam3.chr9 39442067 141 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I a score=1926238.000000 s hg38.chr17_JH159146v1_alt 197721 590 + 278131 agagtgagactccatctcaaaaa-------------------agaaaTATGCATAT-------------------ATAC-TTTGACATAGGTGCTCTGATTAGCAAGTGACAAGAAAG-GGGTTTTCAACCAACATTGCACACATATCCAGAACACTGTTCAGGGgtagacgcattgggaggctgcccag-tgttctgctgt----ggcactgct-aaaagcgtgatggatgcgcttcttcaggaagtgttgccaggggcagttcaggaactacat--gggggaaacagtcccattactttccagctttactcctcCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCGGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGGGCCGGACATCTAAAGCTCCCCAAATGGAATTTCAAGCATAATTTCAAAACTTTAAGAGGAATGTAAATTGACTGGACCCGGTAGTCACAATTAGGGAAACAGAAGAGGGAGATATCAGGCACAATCTCATCGCTAGAGACCTTTGACTCTCC--TGTTTTACATTCTTTTCTTTGTTTACGGA--CGTGGGATTTTTGtttttcaaagtggtaaccagaggtaactaggtaaaaagttgtatattctgctctttt s panTro4.chr17 66317225 590 - 82630442 agagtgagactccatatcaaaaa-------------------ggaaaTATGCATAT-------------------ATAC-TTTGACATAGGTGCTCTGATTAGCAAGTGACAAGAAAG-GGGTTTTCAACCAACATTGCACACATATCCAGAACACTGTTCAGGGgtagacgcattgggaggctgcccag-tgttctgctgt----gacactgct-aaaagcgtgatggatgcgcttcttcaggaagtgttgccaggggcagttcaggaactacat--aggggaaacagtcccattactttccagctttactcctcCTGTTAGTCACCAGACAGGATTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGGGCCGGACATCTAAAGCTCCCCAAATGGAATTTCAAGCATAATTTCAAAACTTTAAAAGGAATGTAAATTGACTGGACCCGGTAGTCACAATTAGGGAAACagaagagggagatatcaggcacaatctcatcgctagagacctttgactctcc--tgttttacattcttttctttgtttatgga--cgtgggatttttgtttttcaaagtggtaaccagaggtaactaggtaaaaagttgtatattctgctctttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24851129 580 - 73212453 agagtgagactccatctcaaaaa-------------------agaaaTATGCATAT-------------------ATAC-CTTGACATAGGTGCTCTGATTAGCAAGTGACAAGAAAG-GGGTTTTCAACCAACATTGCACACATATCCAGAACACTGTTCAGGGG-AGACACATTGGGAGGCTGCCCAG-TGTT---CTGT----GGCACTGCT-AAAAGCGTGGTGGATGCGCTTCTTCAGGAAGTGTTGCCAGGGGCAGTTCAGGAACTGCAT--GGGGGAAACAGTCCCATTACTTTCCAGCTTTACTCCTCCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGG----GCACATCTAAAGCTCCCCAAATGGAATTTCAAGCATAATTTCAAAACTTTAAAAGGAATGTGAATTGACTCAACCC-GTAGTCACAATTAGGGAAACAGAAGAGGGAGATATCAGGCACGATCTCATCGCTAGAGACCTTTGACTCTAC--TGTTTTACATTCTTTTCTTTGTTTATGGA--CATGGGATTTTTGTTTTTTAAAGTGGTAACCAGAGGTAACTAGGTAAAAAGTTGTATA-TCTGCTCTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48070624 588 - 81552678 aaagtgagactccatctcaaaaa-------------------agaaaTATGCATAT-------------------ATGC-CTTGACATAGGTGCTCTGACTAGCAAGTGACAAGAAAG-GGGTTTTCAACCAACATTGCACACATATCCAGAACACTGttcagggg-agacacattgggaggctgcccag-tgttctgctgt----gtcactgct-aaaagtgtgatggacacgcttcttcaggaagtgttgccaggggcagttcaggaactgcat--gggggaaacagtcccattactttccagctttactcctcCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGGCCCGGACATCTAAAGCTCCCCAAATGGAATTTCAAGCATAATTTCAAAACTTTAAAAGGAATGTAAATTGACTGAACCC-ATAGTCACAATTAGGGAAACAGAAGAGGGAGATATCAGGCACAATCTCATTGCTAGAGACCTTTGAGTCTCC--TGTTTTACATTCTTTTCTTTGTTTATGGA--CATGGGATTTTTGTTTTTCAAAGTGGTAACTAGAGGTAACTAGGTAAAAAGTTGTATATTCTGCTCTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53181745 586 + 80904711 aaagtgagactccatctc-aaaa-------------------GGATATATACATGT-------------------ATAC-CTTGACATAAGTGCTATGACTAGCAAGTGACAAGAAAG-GGGTTTTCAACCGACATTGCACACATATCCAGTACACTGttcaacgg-agacacgttgggaggctgcccag-tgttctgctgt----ggcactgct-aaaagcgtgatggacgggctccttcaggaagtgttgccagaggcagtttaggaactgca---aagggaaacaatcccattaccttccagctttactcctcCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGACCCCGACATCTTAAGCTCCCCAAATGGAATCTCAAGCATAATTTCAAAACTTTAAGGGGAACGTAAATTGACTGAACCC-ATAGTCACAATTAGCGaaacagaagaaggagctatcaggcacaatctcatcactagagacctttgactctct--tgttttagattcctttctttgttcatgga--catgggatttttgtttttcaaagcggtaaccagaggtaactaggtaaaaagttgtatattctgctctttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52746439 586 + 80997621 aaagtgagactccatctc-aaaa-------------------GGATATATACATGT-------------------ATAC-CTTGACATAAGTGCTATGACTAGCAAGTGACAAGAAAG-GGGTTTTCAACCGACATTGCACACATATCCAGTACACTGttcaacgg-agacacgttgggaggctgcccag-tgttctgctgt----ggcactgct-aaaagcgtgatggacgggctccttcaggaagtgttgccagaggcagtttaggaactgca---aagggaaacaatcccattaccttccagctttactcctcCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGACCCCGACATCTTAAGCTCCCCAAATGGAATCTCAAGCATAATTTCAAAACTTTAAGGGGAACGTAAATTGACTGAACCC-ATAGTCACAATTAGCGaaacagaagaaggagctatcaggcacaatctcatcactagagacctttgactctct--tgttttagattcctttctttgttcatgga--catgggatttttgtttttcaaagcggtaaccagaggtaactaggtaaaaagttgtatattctgctctttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47749241 586 + 74645514 aaagtgagactccatctc-gaaa-------------------ggatatatacatgt-------------------atac-ctTGACATAAGTGCTATGACTAGCAAGTGACAAGAAAG-GGGTTTTCAACCGACATTGCACACATATCCAGTACACTGTTCAATGG-AGACACGTTGGGAGGCTGCCCAG-TGTTCTGCTGT----GGCACTGCT-AAAAGCGTGATGGACGGGCTCCTTCAGGAAGTGTTGCCAGAGGCAGTTTAGGAACTGCA---AAGGGAAACAATCCCATTACCTTCCAGCTTTACTCCTCCTGTTAGTCACCAGACAGGGTTTTGAATCACTTCAggatcattttctttatttgaaagaatGTGCCTTGGACCCTGACATCTTAAGCTCCCCAAATGGAATCTCAAGCATAATTTCAAAACTTTAAGGGGAACGTAAATTGACTGAACCC-ATAGTCACAATTAGCGAAACAGAAGAAGGAGCTATCAGGCACAATCTCATCACTAGAGACCTTTGACTCTCT--TGTTTTAGATTCCTTTCTTTGTTCATGGa--catgggatttttgtttttcaaagcgGTAACCAGAGGTAACTAGGCAAAAAGTTGTATATTCTGCTCTTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10013155 586 - 75148670 aaagtgagactccatctc-aaaa-------------------GGATATATACATGT-------------------ATAC-CTTGACATAAGTGCTATGACTAGCAAGTGACAAGAAAG-GGGTTTTCAACCAACATTGCACACATATCCAGTACACTGttcaacgg-agacacgttgggaggctgcccag-tgttctgctgt----ggcactgct-aaaagcgtgatggacgggctccttcaggaaatgttgccagaggcagtttaggaactgca---aagggaagcaatcccattaccttccagctttactcctcCTGTTAGTCACCAGACAGAGTTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGACCCCGACATCTTAAGCTCCCCAAAAGGAATCTCAAGCATAATTTCAAAACTTTAAGGGGAACGTAAATTGACTGAACCC-ATAGTCACAATTAGCGAAACAGAAGAAGGAGCTATCAGGCACAATCTCATCACTAGAGACCTTTGACTCTCT--TGTTTTAGATTCCTTTCTTTGTTTATGGA--CATGGGATTTTTGTTTTTCAAAGCAGTAACCAGAGGTAACTAGGTAAAAAGTTGTATATTCTGCTCTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112893268 607 + 159171411 agagtgagactccatctcaaaaataataataataataataataTATACATATATAT-------------------ATAC-CTTGATGTAGGCTCTATGACTAGCAAGTGACAAGAAAG-GGTTTTTCAACCAACATTGCCCAAATACACAGTACACTGTTCAGGAG-AGACACATTGAGAGATTGCTCAG-TCTTCTGCTGTGGGCGGCACTGCTAAAAAGCGTGATGGAGGAGCTTCTTCAGGAAGTGTTGCCAGGGGCAGTTTAGGAACTACCT--GGGGGAAACAATTCCATTATTTTCCAGCTTTACTCCTCCTGTTAGTCACCAGAAAGGATTTTGAATCACTTCAGGATCATTTTCTTTATTTGAAAGAATGTGCCTTGGGTCCCAACATCTAAAGCTCCCCAAGTGGAATTTCAAGCATAATTTCAAAACTTTAAACGGAATGTAAATTAACTGAACCT-GTAGTCACAATTAGGAAAACAGAGGAGGGAGAAATCAGGCACAATCTCATCGCTAAAGACCTTCGACTTTTT--TGTTTCACATTCT----TTTGTTCATGGA--CAGGGGA-TTTTGTTTTTCAAAGTGGTAACCAGAGGTAACTAGGTAAAAAGTTGTATATTCTGCTCTTTT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39442208 601 - 61074082 aaaaaaaaattttttttaaaaaa-------------------aaaaaGAATCATGTAATGGGAAATTTTTTCTTAATATATTTGACATGGGCACTATGAC-------TGACAAGATGGAGGGTTTCCAACCAGCATTGCTGACGTAGACAATACATTGATCAGAAA-ACTTATGTAGGG-GACTGCATAGCTGTTCTGTGAC----AGTACTGCT-AGAAGTGTGGTAGACATGCTTCTTAGGGAAGGGTCATCAGAGGCTCTTGGAGAATTGCATGGTGGGGAAGAAGTCTCGTTACTTTTCAGCTTTTC-CCTCTTATTATTCACCAGGCAGGGTTTTGAGTCACTTTAGGATCATTCCCATCATTCAAAAGAATGTACCTCAAGCCCCAGGAACTAAAGCTCCCCAAATGGAATTTTAAACATAATTTTAAAAGTTTAAAAGGAATGTAAACTGACTGAGTGT-ATAGTCATAACTGAGGAGACAGAAGAGGGAGAAATGAAGCATGGTCTCATCAATGAAGACCTTCAACTCTCTCATATTTCATGTTCTATCTCTTATCCAGGGACCCACATGACTT---TTTTTAAAAGCAGTAACCAGA---ACCAAGATAAAAACTTGTATATTCTGCTCTTTT i canFam3.chr9 I 141 I 1192 e mm10.chr11 99604057 2980 + 122082543 I a score=878331.000000 s hg38.chr17_JH159146v1_alt 198311 341 + 278131 cgagacatattatctcataatttattttcatgctgctgtggagtcttcatgataatcacattttatgCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGCAGAAACTTCAAACCCAAGGTCATTCTAAAGAGATCTGTCTCTCCCCTTTATAAAGATCTGTCTCTCCCCTTTATAAGGATCTGTC--TCCCCTTTATAAAGGTCCAAAAAGATAATCTGTGCATCACTCAGT-AACCTTTCTAGTGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTCGTTTTCAGGCAGAGAAAATATGGGT s panTro4.chr17 66317815 341 - 82630442 cgagacatattatctcataatttattttcatgctgctgtggagtcttcatgataatcacattttatgCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGCAGAAACTTCAAACCCAAGGTCATTCTAAAGAGATCTGTCTCTCCCCTTTATAAAGATCTGTCTCTCCCCTTTATAAGGATCTGTC--TCCCCTTTATAAAGATCCAAAAAGATAATCTGTGCATCACTCAGT-AACCTTTCTAGTGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTCATTTTCAGGCAGAGAAAATATGGGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24851709 344 - 73212453 CGAGACATATTATCTCATAATTTACTTTCATGCTGCTGTGGAGTCTTCATGATAATCACATTTTATGCAATGGGAGCCTCTCTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGCAGAAACTTCGAACCCAAGGTCATTCTAAAGAGATCTGTCTCTCCCCTTTATAAAGATCTGTCTCTCCCCTTTATAAGGATCTGTCTTTCCCCTTTATAAAGATCCAAAAAGATAGTCTGTGCATCACTCAGTAAACCTTTCTAGCGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTCATTTTCAGGCAGAGAAAATATGGGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48071212 344 - 81552678 CGAGACATATTATCTCATAATTTATTTTCATGCTGCTGTGGGGTCTTCATGATAATCACATTTTATGCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACGTTAACAAGACTCATTTCTCTACTGCAGAAACTTTGAACCCAAGGTCGTTCTAAAGAGATCTGTCTCTCCCCTTTATAAAGATTTGTCTCTCTCCTTTATAAGGATCTGTCTCTCCCCTTTATAAATATCCAAAAAGATAGTCTATGCATCACTCAGTAAACCTTTCTAGTGTTTATTCACTCTAAGGCACTTATCCACACCCCATAGCCAAACTTCATTTTCAGGCAGAGAAAATATGGGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53182331 298 + 80904711 tgagacatattatctcataatttattttcatgctgctgtggagtcttcatggtaatcacattttatgCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGCACAAACTTTGAACCCAAGTTAATTCCAAAGACATCTGTCTC----------------------------------------------TCCCCTTTGTAAAGATCCAAAAAAATAGTCTGTGTATCATTCAGTAAACCTTTCTAATGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTAATTTGCAGGCAGAGAAGTTATGGGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52747025 298 + 80997621 tgagacatattatctcataatttattttcatgctgctgtggagtcttcatggtaatcacattttatgCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGCACAAACTTTGAACCCAAGTTAATTCCAAAGACATCTGTCTC----------------------------------------------TCCCCTTTGTAAAGATCCAAAAAAATAGTCTGTGTATCATTCAGTAAACCTTTCTAATGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTAATTTGCAGGCAGAGAAGTTATGGGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47749827 297 + 74645514 TGAGACATATTAtctcataatttattttcatgctgctgtggCGTCTTCATGGTAATCACATTTTATGCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAAGACTCATTTCTCTACTGC-CAAACTTTGAACCCAAGTTAATTCCAAAGACATCTGTCTC----------------------------------------------TCCCCTTTGTAAAGATCCCAAAAAATAGTCTGTGTATCACTCAGTAAACCTTTCTAATGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTAATTTGCAGGCAGAGAAGTTATGGGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10013741 296 - 75148670 TGAGACATATTATCTC--AATTTATTTTCATGCTGCTGTGGAGTCTTCATGGTAATCACATTTTATGCAATGGGAGCCTCTTTGGAAGACTTAAATCATCACATTAACAGGACTCATTTCTCTACTGCACAAACTTTGAACCCAAGTTCATTCCAAAGACATCTGTCTC----------------------------------------------TCCCCTTTGTAAAGATCCAAAAAAATAGTCTGTGTATCATTCAGTAAACCTTTCTAATGTTTATTCACTCTAAGACACTTATCCACACCCCATAGCCAAACTTAATTTGCAGGCAGAGAAATTATGGGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112893875 294 + 159171411 CTAGACATATTATCTCATAATTTATTTTCATGCTGCTGTGGCGT-TTCATGATAATCACATTTTATTCAATGGGAGCTTCTTTGGAAGATTTAAATCATCACGTTAACAAGACTCATTTCTTTACTGCAAAAATTTCTGACCCAAGGTAATTCCAAAGATATTTGTCTC----------------------------------------------TCCCCTTTATAAAGATCCAAAAAGATAGTCTGTGCATCACTCAGTAAACCT---TAGTGTTTATTCACTCTAATACTTTTATCCACACCCCATAACCAAACTTCATTTTCAGGCAGAGAAAATATGGGT i calJac3.chr5 C 0 I 140 e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I a score=781135.000000 s hg38.chr17_JH159146v1_alt 198652 250 + 278131 CATGCTTCAGTTATTCATGCCTCAGAGTTGTAAGAGCACAGACAGCTCTGCGGTTTGACACTTGGTGGCAAGTCACATCCTATTTTCTGACCCcacttattctgaaactggacaatgctcatttaaagctctgccacttactggctgtgtgtccttgggccataataatagttcatatcagaa---ttgtaaggattacatgagctaatatttgtcaagtgctaagaacaaacaatgtctggcacttagtGTC s panTro4.chr17 66318156 249 - 82630442 CATGCTTCAGTTATTCATGCCTCAGAGTTGTAAGAGCACAGACAGCTCTGCGGTTTGACAC-TGGTGGCAAGTCACATCCTATTTTCTGACCCcacttattctgaaactggacaatgctcatttaaagctctgccacttactggctgtgtgtccttgcgccataataatagatcatatcagaa---ttgtaaggattacatgagctaatatttgtcaagtgctaagaacaaacaatgtctggcacttagtGTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24852053 248 - 73212453 CATGCTTCAGTTATTCATGCCCCAGAGTTGTGAGAGCACAGACAGCTCTGCGGTTTGACAC-TGGTGGCAAGTCACATCCTATTTTCTGA-CCcacttattctgaaactggacaatgctcgtttaaagctctgccacttactggctgtgtgtccttgggccataataatagttcatatcagaa---ttgtaaggattacgtgagctaatatttgtcaagtgctaagaacaaacagtgtctggcacttagtGTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48071556 252 - 81552678 GATGCTTCAGTTATTCATGCCCCAGAGTTGTGAGAGCACAGACAGCTCTGCAGTTTGACAC-TGGTGGCAAGTCACATCCTATTTTCTGACCCCACTTGTtctgaaactggacaatgctcatttaaagctctgccacttactggctgtgtgtccttgggccataataatagttcatatcagcattgttgtaaggattacgtgagctaatatttgtcaagtgctaagaacaaacagtgtctggcacttagtGTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53182629 252 + 80904711 CACGCTTCAGTTATTCATGCCCCAGAGTTGTGAGAGCACAGACAGCTCTGCGGTTTGAAAC-TGGTGGCAAGTCACATCCTATTTTCTGACCCcacttattctgaaactggacaatgctcatttaaagctctgctgcttactggctgtgtgtccttgggccataataatagttcatatcagaattgttgtaaggattacatgagctaatatttgtcaagtgctaagaacaaacagtgtctggtacttagtaTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52747323 252 + 80997621 CACGCTTCAGTTATTCATGCCCCAGAGTTGTGAGAGCACAGACAGCTCTGCGGTTTGAAAC-TGGTGGCAAGTCACATCCTATTTTCTGACCCcacttattctgaaactggacaatgctcatttaaagctctgctgcttactggctgtgtgtccttgggccatagtaatagttcatatcagaattgttgtaaggattacatgagctaatatttgtcaagtgctaagaacaaacagtgtctggtacttagtaTC i macFas5.chr16 C 0 I 81 s papAnu2.chr16 47750124 252 + 74645514 CACGCTTCAGTTATTCATGCCCCAGAGTTGTGAGAGCACAGACAGCTCTGCGGTTTGAAAC-TGGTGGCAAGTCACATCCTATTTTCTGACCCCACTTATTCTGAAACTGGACAATGCTCATTTAAAGCTCTGCTGCTTActggctgtgtgtccttgggccaTAATAATAGTTCATATCAGaattgttgtaaggattacatGAGCTAATATTTGTCAAGTGCTAAGAACAAACAGTGTCTGGTACTTagtgtc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10014037 252 - 75148670 CATGCTTCAGTTATTCATGCCTCAGAGTTGTGAGAGCACAGACAGCTCTGCGGTTTGAAAC-TGGTGGCAAATCACATCCTATTTTCTGACCCcacttattctgaaactggacaatgctcatttaaagctctgccacttactggctgtgtgtccttgggccataataatagttcatatcagaattgttgtaaggattacatgagctaatatttgtcaagtgctaagaacaaacagtgtctggtacttagtGTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112894309 251 + 159171411 CATGCTTTAGTTATTCATGCCCCAGAGTTGTGAGAGCACAAACAGCTCTGCAGTTTGACAC-TGGTGGCAAATCACATCCTATTTTTTGATCCcacttattctgaaactagacaatgctcatttaaacctctgccacttactggctgtatgtcctcgggccataataatagttcatatcagagttgttgtaaggattacataagccgata-ttgtcaagtgctaggaacaaacagtgcctagcacttagtGTC i calJac3.chr5 I 140 C 0 e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I a score=1179.000000 s hg38.chr17_JH159146v1_alt 198902 1 + 278131 T s panTro4.chr17 66318405 1 - 82630442 T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24852301 1 - 73212453 C i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48071808 1 - 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53182881 1 + 80904711 t i rheMac3.chr16 C 0 I 216 s chlSab2.chr16 10014289 1 - 75148670 T i chlSab2.chr16 C 0 I 267 s calJac3.chr5 112894560 1 + 159171411 T i calJac3.chr5 C 0 C 0 e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e papAnu2.chr16 47750376 0 + 74645514 C e macFas5.chr16 52747575 81 + 80997621 I a score=17115.000000 s hg38.chr17_JH159146v1_alt 198903 19 + 278131 TGTATTTGT----------taaatatata s panTro4.chr17 66318406 17 - 82630442 TGTATTTGT----------TAA--atata i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24852302 19 - 73212453 TGTATTTGT----------TAAatatata i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48071809 19 - 81552678 TGTATTTGT----------taaatatata i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52747656 29 + 80997621 tatatttatatataacatataaatatata i macFas5.chr16 I 81 C 0 s calJac3.chr5 112894561 19 + 159171411 TGTATTTGT----------TAAATAAATA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e chlSab2.chr16 10014290 267 - 75148670 I e papAnu2.chr16 47750376 0 + 74645514 C e rheMac3.chr16 53182882 216 + 80904711 I a score=84350.000000 s hg38.chr17_JH159146v1_alt 198922 167 + 278131 t------------------------------------atatatagtaaatatatatatacacacatatatacacatatatagtaacatgaccttttactatatatatagtaaaatatatatagtatatatgtatatatacatatgtat-tacatatatagtaaaatatgtatagtatatatg--tataca-gtatatatgtatgtat-- s panTro4.chr17 66318423 167 - 82630442 t------------------------------------atatatagtaaatatatatatacacacatatatacacatatatagtaacatgaccttttactatatatatagtaaaatatatatagtatatatgtatatatacatatgtat-tacatatatagtaaaatatgtatagtatatatg--tataca-gtatatatgtatgtat-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24852321 157 - 73212453 t------------------------------------atatatagtaaatatatatatac----------acacctatataGTAACATGACCTTTTAC--TATATATAGTAAAatatatatagtatatatgtatatatacatatgtat-tacatatatagtaaaatatatatagtatatatgtatatata-gtatatatgtatatat-- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48071828 134 - 81552678 t------------------------------------atatacac-------------------------acacatatatagtaacatgaccttttac--tatatatagtaaaatatat---gtatatatgtatatatacata--tat-tacatatatagtaaaata--tatagtatatatac-tatacatgtataca-gtatatat-- i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52747685 205 + 80997621 tttaaatatatagtatatatagtaaatatatttttaaatatacagtaaatatatatatttatacatatatacacatatataGTAACATGAccttttactatatatagagt-aaatatatgtagtacatatatacatatatgtatatatgtacatatatacctgtatgtgtata-tatacata--tacacacatatatatgtataagtat i macFas5.chr16 C 0 T 315 e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e calJac3.chr5 112894580 0 + 159171411 C e chlSab2.chr16 10014290 267 - 75148670 I e papAnu2.chr16 47750376 0 + 74645514 C e rheMac3.chr16 53182882 216 + 80904711 I a score=7257.000000 s hg38.chr17_JH159146v1_alt 199089 15 + 278131 actatatatgtatat s panTro4.chr17 66318590 15 - 82630442 actatatatgtatat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24852478 15 - 73212453 agtatatatgtatat i ponAbe2.chr17 C 0 I 1516 s nomLeu3.chr19 48071962 15 - 81552678 actatacatgtatat i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e calJac3.chr5 112894580 0 + 159171411 C e chlSab2.chr16 10014290 267 - 75148670 I e papAnu2.chr16 47750376 0 + 74645514 C e macFas5.chr16 52747890 315 + 80997621 T e rheMac3.chr16 53182882 216 + 80904711 I a score=1184.000000 s hg38.chr17_JH159146v1_alt 199104 5 + 278131 ggtgt s panTro4.chr17 66318605 5 - 82630442 GGtgt i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48071977 5 - 81552678 ggtat i nomLeu3.chr19 C 0 C 0 e ponAbe2.chr17 24852493 1516 - 73212453 I e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e calJac3.chr5 112894580 0 + 159171411 C e chlSab2.chr16 10014290 267 - 75148670 I e papAnu2.chr16 47750376 0 + 74645514 C e macFas5.chr16 52747890 315 + 80997621 T e rheMac3.chr16 53182882 216 + 80904711 I a score=112885.000000 s hg38.chr17_JH159146v1_alt 199109 1254 + 278131 tgcgggaagtcaggaaccccaaacggagggactgactgaagccatgacagaagaacgtggattgtgaagattttatggacatttattagttcctcaaattaatacttttgtaatttcttatgcctgtctttactgaaatctctaaacataaattgtaaagatttcatggacacttatcacttccccaatcaatacccttgtgatttcctatgcctgtctttactttaatctcttaatcctgtcagttgaggaggatgtatatcattccaggaccctgtaataattgcattaactacaaaaattgtacagcatgtctgtttgagcaatatgaaatgtgggcaccctgaaaaaagaacagaataacagcaattgttcagggaataagagagataatcttaaactctgaccgctggtgagccgggcagaacagagccatatttctcttctttcaaaagcaaatgggagaaacatcgctgaattctttttctcagcgtggaacgtccctgagaaagagaatgcgcacctaggggtaggtctctgaactggcccccccggggtgtacctgtctcttatggtcgagattgcagaggtgaaataaactccagtctcccatagcgctcccaggcttattaggaagaggaaattcccacctaataacttttggtcagaccggttgatctcaaaaccctgtctcctgataagatgttatcaatgacagtggtgcccaaaacttcattagcaattttaatttcacctcggtcctgtggtcctctgatctcgccctgcctccacttgccttgtgatattgcattaccctgttaagtacttgatgtctgtcactcacacctattcgtatactctctccccttttgaaactccctaataaaaacttgctggtttttgtggcttgtggggcatcacggatcctaccaaaatgtgatgtctcccccggacacccagctttaaagtttctctcttttgttctctgtccctttatttctcaagccagccgatgcttaggaaaatagaaaagaacatacgtgattatcggggcaggttccccgataatatggtacatatatattacatatatagtaaaatatatataatatattacatatatagtaaaatatatataatatattatatatatagtaaaatatatataatataatatatatagtaaaatatatataatatattatatatagtaaaatatatataatatattatatatatagtaaaatatatata s panTro4.chr17 66318610 1244 - 82630442 tgcgggaagtcaggaaccccaaacggagggaccgactgaagccatgacagaagaacgtggattgtgaagattttatggacatttattagttccccaaattaatactttcgtaatttcttatgcctgtctttactgaaatctctaaacataaattgtaaagatttcatggacacttatcacttccccaatcaatacccttgtgatttcctatgcctgtctttactttaatctcttaatcctgtcagttgaggaggatgtatatcattccaggaccctgtaataattgcattaactacaaaaattgtacagcatgtgtgtttgagcaatatgaaatgtgggcaccctgaaaaaagaacagaataacagcaattgttcagggaataagagagataatcttaaactctgaccgctggtgagccgggcagaacagagccatatttctcttctttcaaaagcaaatgggagaaatatcactgaattctttttctcagcgtggaacgtccctgagaaagagaatgcgcacctaggggtaggtctctgaactggcccccccggggtgtacctgtctcttatggtcgagattgcagaggtgaaataaactccagtctcccatagcgctcccaggcttattaggaagaggaaattcccacctaataaattttggtcagaccggttgatctcaaaaccttgtctcctgataagatgttatcaatgacagtggtgcccaaaacttcattagcaattttaatttcgcctcggtcctgtggtcctctgatctcgccctgcctccacttgccttgtgatattgtattaccctgttaagtacttgatgtctgtcactcacacctattcgtatactccctcccgttttgaaactccctaataaaaacttgctggtttttgtggcttgtggggcatcacggatcctaccaaaatgtgatgtctcccccggacacccagctttaaagtttctctcttttgttctctgtccctttatttctcaagccagccgatgcttaggaaaatagaaaagaacatacgtgattatcggggcaggtcccccgataATATGGTACatatatattacatatatagtaaaatatatataatatatt--atatatagtaaaatatatataatatgt--tatatatagtaaaatatatataatatgttatatatagtaaaatatatataatatgt--tatatagtaaaatatatataatatgt----tatatagtaaaatatatata i panTro4.chr17 C 0 C 0 e ponAbe2.chr17 24852493 1516 - 73212453 I e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e calJac3.chr5 112894580 0 + 159171411 C e chlSab2.chr16 10014290 267 - 75148670 I e papAnu2.chr16 47750376 0 + 74645514 C e macFas5.chr16 52747890 315 + 80997621 T e rheMac3.chr16 53182882 216 + 80904711 I e nomLeu3.chr19 48071982 0 - 81552678 C a score=0.000000 s hg38.chr17_JH159146v1_alt 200363 243 + 278131 acatattatatatagtaaaatatatataatatattatatatatagtaaaatatatataatatattatatatagtaaaatatatataatatattatatatagtaaaatatatataatatattatatatagtaaaatatatataatatattatatatagtaaaatatataatatattatatatagtaaaatatatataatatattatatatatattaaaatatatataatatattatatatatag e ponAbe2.chr17 24852493 1516 - 73212453 I e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e calJac3.chr5 112894580 0 + 159171411 C e chlSab2.chr16 10014290 267 - 75148670 I e papAnu2.chr16 47750376 0 + 74645514 C e macFas5.chr16 52747890 315 + 80997621 T e rheMac3.chr16 53182882 216 + 80904711 I e nomLeu3.chr19 48071982 0 - 81552678 C e panTro4.chr17 66319854 0 - 82630442 C a score=11705.000000 s hg38.chr17_JH159146v1_alt 200606 83 + 278131 taaaatatataatatattata-tatagta---aaatatata---atatattatatatagtaaaatatatataatatattatatatagtaa s macFas5.chr16 52747575 82 + 80997621 TAAAatagat-atattttatattataatatacaaatatatatttatatataacatata--aagatat-----atttactatatatactat i macFas5.chr16 T 315 C 0 s papAnu2.chr16 47750376 81 + 74645514 taaaatatat-atattttata-tataatatataaatatatatttatatataacatata--aagatat-----atttactatatatactat i papAnu2.chr16 C 0 C 0 e ponAbe2.chr17 24852493 1516 - 73212453 I e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e calJac3.chr5 112894580 0 + 159171411 C e chlSab2.chr16 10014290 267 - 75148670 I e rheMac3.chr16 53182882 216 + 80904711 I e nomLeu3.chr19 48071982 0 - 81552678 C e panTro4.chr17 66319854 0 - 82630442 C a score=14775.000000 s hg38.chr17_JH159146v1_alt 200689 114 + 278131 ------atatataatatattatgtatagtaaaa----tatatataa-tatattatatatagtaaatatataatatat-tatatatagtaaaatatatataatatatt--atatatagt-aaaatatata s nomLeu3.chr19 48071982 87 - 81552678 ------atatattacatat-----atagtaaaa----tacata-----------------gtatatatatactatacatgtatatagta---tatatat----tact--atatatagt-aatatatata i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52747657 85 + 80997621 atatttatatataacatat-----------aaa----tatatattt----------------aaatatatag------tatatatagta---aatatat----ttttaaatatacagtaaatatatata i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47750457 102 + 74645514 atatttacatataacatat-----------aaattactatatatttatatgttatat---aaaaatatatag------tatatatagta---aatatat----ttttaaatatacagtaaatatatata i papAnu2.chr16 C 0 C 0 e ponAbe2.chr17 24852493 1516 - 73212453 I e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e calJac3.chr5 112894580 0 + 159171411 C e chlSab2.chr16 10014290 267 - 75148670 I e rheMac3.chr16 53182882 216 + 80904711 I e panTro4.chr17 66319854 0 - 82630442 C a score=79161.000000 s hg38.chr17_JH159146v1_alt 200803 143 + 278131 atataatatattatatatttatatatacagatatact-agat-atattttactatatatagtatatatgtatata-tacaaatatgtatatatattttactatatgtatt---------------ttacatatac---tatatatattta---ctatatgtatac-------ca s panTro4.chr17 66319854 143 - 82630442 atataatatattacatatttatatatacatatatact-atat-gtattttactatatatagtatatatgtatata-tacaaatatgtatatatattttactatatgtatt---------------ttacatatac---tatatatattta---ctatatgtatac-------ca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24854009 142 - 73212453 atataatatattatatatttatatata-atatatact-atat-atattttactatatatagtatatatgtatata-tacaaatatgtatatatattttactatatgtatt---------------ttacatatac---tatatatattta---ctatatgtatac-------ta i ponAbe2.chr17 I 1516 C 0 s nomLeu3.chr19 48072069 135 - 81552678 ----------gtatatatgtatatatacatatata---------tattttactatacatagcatatatat------tttctatatgtatgtatatttt-ctatatatatgacatatatatagaaaatatatatac---tatatatattta---ctgtatgtatac-------ta i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52747742 135 + 80997621 -----------tttatacatatatacacatatataGTAACATGAccttttactatatatagagtaaatatatgtagtacatatatacatatatg------tatatatgt----------------acatatatacctgtatgtgtat------atatacatatacacacatata i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47750559 143 + 74645514 -----------tttatacatatatacacatatatagtaacatgaccttttactatatatagagtaaatagatatagtacatatatacatatatgt----atatatatgt----------------acatatatacctgtatgtatatatatacatatacatatacacacatata i papAnu2.chr16 C 0 C 0 e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e calJac3.chr5 112894580 0 + 159171411 C e chlSab2.chr16 10014290 267 - 75148670 I e rheMac3.chr16 53182882 216 + 80904711 I a score=7008.000000 s hg38.chr17_JH159146v1_alt 200946 5 + 278131 tatgt s panTro4.chr17 66319997 5 - 82630442 tatgt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24854151 5 - 73212453 tatgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48072204 5 - 81552678 tatgt i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52747877 5 + 80997621 tatgt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47750702 5 + 74645514 tatgt i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112894580 3 + 159171411 --AGT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39442809 1192 - 61074082 I e mm10.chr11 99604057 2980 + 122082543 I e chlSab2.chr16 10014290 267 - 75148670 I e rheMac3.chr16 53182882 216 + 80904711 I a score=1694.000000 s hg38.chr17_JH159146v1_alt 200951 1 + 278131 a s panTro4.chr17 66320002 1 - 82630442 a i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24854156 1 - 73212453 a i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48072209 1 - 81552678 g i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52747882 1 + 80997621 a i macFas5.chr16 C 0 I 4 s papAnu2.chr16 47750707 1 + 74645514 a i papAnu2.chr16 C 0 I 4 s calJac3.chr5 112894583 1 + 159171411 A i calJac3.chr5 C 0 I 2 s canFam3.chr9 39444001 1 - 61074082 a i canFam3.chr9 I 1192 C 0 e mm10.chr11 99604057 2980 + 122082543 I e chlSab2.chr16 10014290 267 - 75148670 I e rheMac3.chr16 53182882 216 + 80904711 I a score=133577.000000 s hg38.chr17_JH159146v1_alt 200952 38 + 278131 tatataGCAAAAGGTCATGTTACATTGGTACTTTCTAA s panTro4.chr17 66320003 38 - 82630442 tatataGCAAAAGGTCATGTTACATTGGTACTTTCTAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24854157 38 - 73212453 tatataGCAAAAGGTCATGTTACATTGGTACTTTCTAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48072210 38 - 81552678 tatatagtaaaaggtcatgttacattggtactttctaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53183098 38 + 80904711 tatataGTAAAAGGTCATGTTACATTGGTACTTTTTAA i rheMac3.chr16 I 216 C 0 s macFas5.chr16 52747887 38 + 80997621 tatatagtaaaaggtcatgttacattggtactttttaa i macFas5.chr16 I 4 C 0 s papAnu2.chr16 47750712 38 + 74645514 tatataGTAAAAGGTCATGTTACATTGgtactttttaa i papAnu2.chr16 I 4 C 0 s chlSab2.chr16 10014557 38 - 75148670 tatatagtaaaaggtcatgttacgttggtactttttaa i chlSab2.chr16 I 267 C 0 s calJac3.chr5 112894586 38 + 159171411 TATGTTGTAAAAGGTCACGTTACATTGGTAATTTCTAA i calJac3.chr5 I 2 C 0 s canFam3.chr9 39444002 38 - 61074082 tatattttaaaaaGCCATGTTATGTGGGTGCCTTATAA i canFam3.chr9 C 0 C 0 e mm10.chr11 99604057 2980 + 122082543 I a score=78813.000000 s hg38.chr17_JH159146v1_alt 200990 18 + 278131 ATTCTAAACTTTAAGTTT s panTro4.chr17 66320041 18 - 82630442 ATTCTAAACTTTAAGTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24854195 18 - 73212453 ATTCCAAACTTTAAGTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48072248 18 - 81552678 attctaaACTTTAAGTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53183136 18 + 80904711 ATTCTAAACTTTAAGTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52747925 18 + 80997621 attctaaACTTTAAGTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47750750 18 + 74645514 attctaaactTTAAGTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10014595 18 - 75148670 attctaaACTTTAAGTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112894624 18 + 159171411 ATTCTAAACTTTAAGTTT i calJac3.chr5 C 0 I 316 s mm10.chr11 99607037 18 + 122082543 ACTTTAAAATTTGAATTC i mm10.chr11 I 2980 C 0 s canFam3.chr9 39444040 18 - 61074082 ACTCTAAATTTTGAGTTT i canFam3.chr9 C 0 C 0 a score=1456192.000000 s hg38.chr17_JH159146v1_alt 201008 425 + 278131 AGAAAAAAGACCAACATATTTGTTATG-GCAAATGGTTAGTTCTCTGCTCAGTCACCAAACAATACACATGAAATAACAT---TATTCAGTAGTAAGTTCCATTAATAGCATGAAATAAAATAAAAGCACCTGGAAGGAAGAAACAGAGCACCTTCTCATTGAGCACTTACCTCTGTGAA-GGGAGTCAGGCTATTGTT---GAACTGA-----CAGAAGGCATATCTG---------TCAGGACTGTGTATAGCAACAAGACCCCTACTGAGAACCCCACAGCCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT------AAAAAAAAAA-GCCTTCAAATTGATTTAGACAGATTTCTCATGGTGATGGACAACAGATTTTGTGTAACAAACTCCAGAGCTTTATTTCACATTATCATTTAACAATAACATTATGAACAAAtttt- s panTro4.chr17 66320059 426 - 82630442 AGAACAAAGACCAACATATTTGTTATG-GCAAATGGTTAGTTCTCTGCTCAGTCACCAAACAATACACATGAAATAACAT---TATTCAGTGGTAAGTTCCATTAATAGCATGAAATAAAATAAAAGCACCTGGAAGGAAGAAACAGAGCACCTTCTCATTGAGCACTTACCTCTGTGAA-GGGAGTCAGGCTATTGTT---GAACTGA-----CAGAAGGCATATCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGCCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT------AAAAAAAAAAAGCCTTCAAATTGATTTAGACAGATTTCTCATGGTGATGTACAACAGATTTTGTGTAACAAACTCTAGAGTTTTATTTCACATTATCATTTAACAATAACATTATGAACAAATCTt- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24854213 424 - 73212453 AGAACAAAGACCAACATATTTGTTATG-GCAAATGGTTAGTTCTCTGCTCAGTCACCAAATAATACACATGAAATAACAT---TATTCAGTGGTGAGTTCCATTAATAGCATGAAATAAAATAAAAGCACCTGGAAGGAAGAAACAGAGCATCTTCTCATTGAGCACTTACCTCTGTTAA-AGGAGTCAGGCTATTGTT---GAACTGA-----CAGAAGGCATATCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGCCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT------AAAAAGAAAA-GCCTTCAAATTGATTTGGACAGATTTCTCATGGTGATGGACAACAGATTTTGTGCAACAAACTCTAGAGCTTTATTTCACATTATCGTTTAACAATAACATTATGAAC-AAtttt- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48072266 420 - 81552678 AGAATGAAGACCAACATATTTGTTATG-GCAAATGGTCAGTTCTCCACTCAGTCACCAAATAATACACATGAGATAACAT---TGTTCAGTGGTAAGTTCCATTAATAGCATG-----AAATAAAAGCACCTGGAAGGAAGAAATAGAGCGCCTTCTCACTGAGCACTTACTTCTGTTAA-GGGAGTCAGACTATTGTT---GAACTGA-----CAGAAGGCACATCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGCCCGTGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT------AAAAAAAAAAAGCCTTCAATTTGATTTAGACGGATTTCTCGTGGTGATGGACAACAGATTTTGTGTAACAAACTCTGGAGCTTTATTTCTCATTATTGTTTAACAATAACATTATAAAC-AAtttt- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53183154 429 + 80904711 AGAACAAAGATCAACATATTTTTTATG-GCAAATGATCGGTTCTCTGCTCAGTCACCAAAGAATATGCATGAAATAACAT---TATTCAGTGGTGAGTTCCATTAATAGCATGAAGTAAAATAAAAGCACCTGGAAGGAAGAAATAGAGCACCTTCTCATTGAGTACTTACCTCTGTTAA-GGGAGTCAGGCTATTGTT---GAACTGA-----CAGGCGGCACGTCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGTCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT--AAAAAAAAAAAAAAGGCCTTCAAATTGATTTAGACAGATTTCTCGTGGCGGTGGACAACAGATTTTGTGTAATAAACTCTAGAGCTTTATTTCACATTATCATTTAACAATAACATTATGAAC-AAtttt- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52747943 431 + 80997621 AGAACAAAGATCAACATATTTTTTATG-GCAAATGATCGGTTCTCTGCTCAGTCACCAAAGAATATGCATGAAATAACAT---TATTCAGTGGTGAGTTCCATTAATAGCATGAAGTAAAATAAAAGCACCTGGAAGGAAGAAATAGAGCACCTTCTCATTGAGTACTTACCTCTGTTAA-GGGAGTCAGGCTATTGTT---GAACTGA-----CAGGCGGCACGTCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGTCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTTAAAAAAAAAAAAAAAAGGCCTTCAAATTGATTTAGACAGATTTCTCGTGGCGGTGGACAACAGATTTTGTGTAATAAACTCTAGAGCTTTATTTCACATTATCATTTAACAATAACATTATGAAC-AAtttt- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47750768 427 + 74645514 AGAACAAAGATCAACATATTTGTTATG-GCAAATGATCGGTTCTCTGCTCAGTCACCAAAGAATATGCATGAAATAACAT---TATTCAGTGGTGAGTTCCATTAATAgcatgaagtaaaataaaagcacCTGGAAGGAAGAAATAGAGCACCTTCTCATTGAGTACTTACCTCTGTTAA-GGGAGTCAGGCTATTGTT---GAACTGA-----CAGGCGGCAGGTCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACGGTCCATGC-AATACAGAATGGGGTCTTAGAGAagcatcctt----aaaaaaaaaaaaggccttcaaATTGATTTAGACAGATTTCTCGTGGTGGTGGACAACAGATTTTGTGTAATAAACTCTAGAGCTTTATTTCACATTATCATTTAACAATAACattatgaac-aatttt- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10014613 428 - 75148670 AGAACAAAGACCAACATATTTTTTATG-GCAAATGATCGGTTCTCTGCTCAGTCACCAAAGAATACGCATGAAATAACAT---TATTCAGTGGCGAGTTCCATTAATAGCATGAAATAAAATAAAAGCACCTGGAAGGAAGAAATAGAGCACCTTCTCATTGAGTACTTACCTCTGTTAA-GGGAGTCAGGCTATTGTT---GAGCTGA-----CAGGCGGCACATCTG---------TCAGGACTGTGTATAACAACAAGACCCCTACTGAGAACCCCACAGCCCATGC-AATACAGAATGGGGTCTTAGAGAAGCATCCTT---AAAAAAAAAAAAAAGCCTTCAAATTGATTTAGACAGATTTCTTGTGGTGGTGGACAACAGATTTTGTGTAATAGACTCTAGAGCTTTATTTCACATTATCATTTAACAATAACATTATGAAC-AAtttt- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112894958 427 + 159171411 agaacaaaGACAAACATATTTGTTATG-GCAAATGGTCAATTCTCTGCGTAGTCACCAAAGAATACACATGAAATAACAT---TATTCAGTGGTGAGTTCCATTAATAGCATGAAATAAATTTAAAACACCTGGAAGGAAGAAATAGCGTGCCCTCTAATCAAGCACTTATCTCTGTTAA-GGGGAGTCAGCTCTTGTT---GAACTGA-----CAGGAGGCACATCTG---------TCAGCACTGTGTATAACAACAACAGCCCTACTGAGAACCCT-CAGCCCATGC-AACACCAAATGAGGTCTTAGAGAGGCATCCTT--AAAAAAAAAAAAAAAGCCTCCAAATTGATTTAGACAGATTTCTAGTGGTGGTGGA-AACAGATTTGGTGTAATAAACTCTACAGCTTTATTTCACACTATCGTTTAACAATAACATTATGAAC-ACtttt- i calJac3.chr5 I 316 C 0 s mm10.chr11 99607055 359 + 122082543 AGAGTAAAG-TCAGCATGTGTGATGTGAGCCACTG--------------CAGCCGCCACAGGATGCCCACCAAATAAGATGAATATTTAATGGTGAGTTTTCTTAATATCATAAAGTAAAATTAATGTACCAAGAAAGAAGAA--------------------------ACCATTTCCAG-GGGAATTAGACTCCTGCT---GAGTGAAGAGGCCAGAGGCCAAGTATGCTTCAGAGCCCTGGACGGTGTGTG------------TTACTGCAAACACCACCACCCA-GC-AACA---------GTCTT-------TTTTTTT------TTTTTGTAAAGGTTTGTAAA-GAATTTAGAAAGCTTCCTAGCAGTGGTGGGTAATATATTTTGATTATCAAATCATAGACCT-------------CCATTCAATAACATTGTTGTGAAT-ATATTT- i mm10.chr11 C 0 I 1544 s canFam3.chr9 39444058 425 - 61074082 AGAATT-AGATGAACATATCTGATATG-GCAAATGGCCAGCTGTTTGCCCAGTCACCACAGAAAATATTCTAAATAATAT---TATCTATTGGAGAGTTTCATTAATAGCATGACATAAAATAAAAATGCCTAGAAGGAAGATATGAAGCTCCCTCTTTTTAA-CACTAGTTTCTGGAAAGGGGAGTTAGGTTATTGTTGCAGAATTTA-----CAAGAAGCATATGTG---------TCGGAATTGTGGATAGTGTCTTGAACCCGACTGAGAACCCCACAGTCCATGCAAACACAGAGTGAACTCTTAGAAAAACATCGTT----------TAAAAAAGACTTAAAAGTAATACAGGCAGATTCCTGAGGGTGATGGGCAACATATTTTGTATTACTAATGGTAGGGCTTTATTTAACACTACCATTCAACAATAGCATTATGAAC-AAATTTT i canFam3.chr9 C 0 I 1815 a score=2159822.000000 s hg38.chr17_JH159146v1_alt 201433 728 + 278131 tttttcattatttcaacttttcctttagattcaggtggtatattgtgtgatgtgccagtttgttatgtgggtatactgtgtgatgctgaggtttgggg-------tatgatcgatcctgtcacccagg-actgagtgtagcacccaacagtttttcagcccttgtctccctcccgctctgcctgctctagtagtccccagtgtctattgttgccatcattatgtcaatgagtacccgatgtttaactcccatttgtcagtgagaaaatatggcatttggttttctgttcctgggttaatttgtttaggataatggcccccagctgcatccatgttactgtgaaggacatgagttcattg-ttttttatgggtgagtagtattccatggtgtatgtgtaccatattttctctatccagtccaccactgatgggaacctaggtcgattccatgtctttgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtctttttggtagaatgatttgttttcttttggctacagaccaagtaaagggattgctgggtcaaatgatagttctactttaagttcctgagaaatctccacactgctttccatagtagctgaactaatttacattcccatcaacagcatataagcattctctcctctcaacagccttgtcagcatctgttg-ttttttaa--ctatttttttctttattctgaaagtatggggcttcagtta s panTro4.chr17 66320485 728 - 82630442 tttttcattatttcaacttttcctttagattcaggtggtatattttgtgatgtgccagtttgttatgtgggtatactgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-actgagtgtagcacccaacagtttttcagcccttgtctccctcccgctctccctgctctagtagtccccagtgtctattgttgccatcattatgtcaatgagtacctgatgtttaactcccatttgtcagtgagaaaatatggcatttggttttctgttcctgggttaatttgtttaggataatggcccccagctgcatccatgttactgtgaaggacatgagttcattg-ttttttatgggtcagtagtattccatggtgtatgtgtaccatattttctctatccagtccaccactgatgggaacctaggtcgattccatgtcttcgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtctttttggtagaatgatttgttttcttttggctacagaccaagtaaagggattgctgggtcaaatgatagttctactttaagttcctgagaaatctccacactgctttccatagtagctgaactaatttacattcccatcaacagcatataagcattctctcctctcaacagccttgtcagcatctgttg-ttttttta--ctatttttttctttattctgaaagtatggggcttcagtta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24854637 728 - 73212453 tttttcattatttcaacttttcctttagattcaggtggtatattgtgtgatgtgcccgtttgttatgtgggtatactgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-actgagtgtagtatccaatagtttttcagcccttgtctccctccctctctccccactctagtagtccccagtgtctattgttgccatcattatgtcaatgagtacctgatgtttaactcccatttgtcagtgagaaaatatggcatttggttttctgttcctgggttaatttgcttaggataatggcccccagctgcatccatgttactgtgaaggacatgagttcattg-ttttttatggctgagtagtgttccatggtgtatgtttaccatatttcctctatccagtccaccactgatgggaacctaggtcgattccatgtctttgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtcttttcggtagaatgatttgttttc-tttggctacagaccaagtaaagggattgctgggtcaaatgatagttctactttaagttcttgagaaatctccatactgatttccatagtggctgaactaatttatattcccatcaacagcatataagcattctctcctctcaacagccttgtcagcatctgttgtttttttta--ctattttcttctttattctgaaagtatggggcttcaatta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48072686 728 - 81552678 tttttcattatttcaacttttcctttagattcatgtggtatgttgtgtgatgtgccagtttgttatgtgggtatattgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-actgagtgtag-acccagtagtttttcagcctgtgtctccctccctctctccccgctctagtagtccccagtgtctactgttgccatcattatgtcaatgagtacctgatgtttaactcccatttgtcagtgagaacatgcggcatttggttttctgttcctgggttaatttgcttagtataatggctcccagctgcatccacattactgtgaaggacatgatttcattgtttttttatggctgagtagtattccatggtgtatgtgtacgatattttctctatccagtccaccactgatgggaacctaggtcgattccatgtctttgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtcttttcggtagaatgagttgttttcttttggctacagaccaagtaaagggattgctgggtcaaattatagttctactttaagttcttgaaaaatctccacactgctttccatggtggctgaactaatttacattcccatcaacagcatataagcattctctcctctcgacagccttgtcagcatctgttg-ttttttta--ctatttttttctttattctgaaagtatggggcttcaatta i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53183583 728 + 80904711 tttttcactatttcaacttttcctttagattctgggggtacattgtgtgatgtaccagtttgctatgtgggtatattgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-actgagtgtagtagccaatagtttttcaatccttgtcttcctccctctctccccactctagtagtccccgatgtcgattgttgccatcattaggtcaatgaatacccgatgtttaattcccatttgtcagtgagaacatatggcatttggttttctgttcctgagttaatttgattaggataatggcccccagctgcatccatgttactgtgaaggacatgagttcattg-ttttttatggctgagttgtactccatagtgtatgtgtaccacattttctctatccagtccaccactgatgggaacctaggttgattccatgtctttgctattgtgaactgtactgtgacaaacatgcaagtgcatgtgtctttttggtagaatgatttattttcttttggctacagaccaagtaaagggattgctgggtcaaatgatagttctattttaagttcttgagaaatctccacattgctttccatagtggctgaactaatctacattcccatcaacagcatataagcattctctcctctcgacagccttgtcagcatctgttg-ttttttta--ctatttctttctttatcctgaaagtatggggcttcaatta i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52748374 728 + 80997621 tttttcactatttcaacttttcctttagattccgggggtacattgtgtgatgtaccagtttgctatgtgggtatattgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-actgagtgtagtagccaatagtttttcaatccttgtctccctccctctctccccactctagtagtccccgatgtcgattgttgccatcattaggtcaatgaatacccgatgtttaattcccatttgtcagtgagaacatatggcatttggttttctgttcctgggttaatttgattaggataatggcccccagctgcatccatgttactgtgaaggacatgagttcattg-ttttttatggctgagttgtactccatggtgtatgtgtaccacattttctctatccagtccaccactgatgggaacctaggttgattccatgtctttgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtctttttggtagaatgatttattttcttttggctacagaccaagtaaagggattgctgggtcaaatgatagttctattttaagttcttgagaaatctccacattgctttccatagtggctgaactaatctacattcctatcaacagcatataagcattctctcctctctacagccttgtcagcatctgttg-ttttttta--ctatttCTTTCTTTATTCTGAAAGTATGGGGCTTCAATTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47751195 728 + 74645514 tttttcactatttcaaCTTTTCCTTTAGATTCCGGGGGTACATTGTGTGATGTACCAGTTTGCTAtgtgggtatattgtgtgatgctgaggtttgggg-------tatgattgatcctgtcacccagg-acTGAGTGTAGTagccaatagtttttcaacccttgtctccctccctctctccccactctagTAGTCCCCGATGTCGATTGTTGCCATCATTAGGTCAATGAATACCCGATGTTTAATTCCCATttgtcagtgagaacatatggtatttggttttctgttcctgggttaatttgattaggataatggcccccagctgcatccatgttactgTGAAGGACATgagttcattg-ttttttatggctgagttgtactccatggtgtatgtgtaccacattttctctatccagtccaccactgatgggaacctaggttgattccatgcctttgctattgtgaactgtACTGTGACAAAcatgcaagtgcatgtgtctttttggtagaatgatttattttcttttggctacAGACCaagtaaagggattgctgggtcaaatgatagttctattttaaattcttgagaaatctccacattgctttccatagtggctgaactaatctacattcccatcaacagcatATAAGCATTCTCTCCTCTCGAcagccttgtcagcatctgttg-ttttttta--ctatttctttctttattctgaaaGTATGGGGCTTCAATTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10015041 728 - 75148670 tttttcattatttcaacttttcctttagattcagggggtacattgtgtgatgtaccagtttgttatgtgggtatatagtgtgatgctgaggtttgggg-------tatgattgatcctgtcacctagg-actgagtgtaatacccaatagtttttcaacccttgtctccctccctctctccccgctctagtagtccccgaagtctattgttgccatcattaggtcaatgagtacccgatgtttaattcccatttgtcagtgagaacatatggcatttggttttctgttcctgggttaatttgcttaggataatggcccccagctgaatccatgttaccgtgaaggacatgagttcattg-ttttttatggctgagttgtactccgtggtatatgtgtaccacattttctctatccagtccaccactgatgggaacctaggttgattccatgtctttgctattgtgaattgtactgtgacaaacatgcaagtgcatgtgtctttttggtagaatgatttattttcttttggctacagaccaagtaaagggattgctgggtcaaatgatagttctattttaagttcttgagaaatctccacattgccttccatagtgactgaactaatctacattcccatcaacagcatataagcattctctcctctcgacagcctcgtaagcatctgttg-ttttttta--ctatttTTTTCTTTATTCTGAAAGTATGGGGCTTCAATTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112895385 715 + 159171411 tttttcattatttcaagttttcctttagattcagg-ggcatattgtgtgatgtgtcagttcgttatgtgggtatattgtgtgatgctgaggtatgaggtgtgagttatgactgatcttgtcacccaggtactgagtgtagtacccaatcgtttttcaacccttgtctccctccctctccccccactctagttgtctccagtggctattgttgccatca-tatgtcaatgagtacctgaggtttaactccc-cttgtaagtcagaacatgtggtatttgtttttctgttccttggttactttgcttaggctaatggcctccagcagcatccatgttactgtgaaaaataagatttcattc-cactt--tggctga-------------gtgtatgtataccgtattttctgtgtccattccaccactgatgggaacataggttgattccatgtctctgctattgtgaattgtactgtgacaaatatgcaagtgcatgtgtctttttggtagaatgatttgttttcttctggctaaagacccagtaaagaaattgctgggtcaaacgatagttctattttaaattcttgagaaatctccacactgctttccgtagtgg-----ctaatttacattcccattaacagtgtataagcattccctcttctccacagccttgccagcatctgtta-tttttttgactttttCTTTTTTTTACTCTGAAAGTATGGGGCTTCAATTA i calJac3.chr5 C 0 I 2969 e canFam3.chr9 39444483 1815 - 61074082 I e mm10.chr11 99607414 1544 + 122082543 I a score=3329664.000000 s hg38.chr17_JH159146v1_alt 202161 1113 + 278131 ctgagctttttaataatagccattttgactggtgtaagatggtatctcattgtggttttgattttgcatttctttgatgaataatgatgtggagca-ttttttcacatgtgtgtttggctgcttgtatgtcttgttttgagaagtgattgttcaagtcctttgcccactttttaatgggattatttg-tttttgcttgttcaattgtttaagttccttatagattctggatgttaggcctttgttggatgcacagtttgtgaatattttctctcattctgtaggttgtctatttactgtgttcatagtttcattt-actgtgcagaagctctttagtttaattaggtcccacttgccaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttcccaaggttgatgttaagaattatgttttctagattttctcctagggtttttaaagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaa-gtcagggtctagtttcaatcatctgcataaagctagccagctatcccagcaccacttattgaatagggagtcctatcctcattgcttatttttgttaatgatatcaaagattagattgttgtatgagcatggctttatttctgggttctctattctgttccttttgtctatgccactttatattttacaactttctgtttttgtaccagtaccatgctgttttgtttactgtagtcttatagcatagtttgaagtcaggtaatgtgatgccttcagt-tttctttttatttacgattgctttggctatttgggctctttttggttccttatgaatttcagaatag-tttttttctagttctgtgaaaaatgacattggtagcttgatagaaatagcattgaatctgtagattgctttgggcagtgtggtcattttaatgatactgattcttccaatccattggcatgggatgtttttccattcgtttgtgtcacctatcatttctttaagtcgtgttctgtagttttctctgtagagatttttcacttccttggctagatgtattcctaggaagtgtgtatatgtgtgtgtgtg s panTro4.chr17 66321213 1113 - 82630442 ctgagttttttaataatagccattttgactggtgtaagatggtatctcattgtggttttgattttgcatttctttgatgaataatgatgtggagca-ttttttcatatgtgtgtttggctgcttgtatgtcttgttttgagaagtgattgttcaagtcctttgcccactttttaatgggattatttg-tttttgcttgttcaattgtttaagttccttatagattctggatgttagacctttgttggatgcacagtttgtgaatattttctctcaatctgtaggttgtctatttactgtgttcatagtttcattt-actgtgcagaagctctttagtttaattaggtcccacttgccaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttcccaaggttgatgttaagaatgatgttttctagattttctcctagggtttttaaagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaa-gtcagggtctagtttcaatcatctgcatagagctagccagctatcccagcaccacttattgaatagggagtcctatcctcattgcttatttttgttaatgttatcaaagattagattgttgtatgagcatggctttatttctgggttctctattctgttccttttgtctatgccactttatattttaaaactttctgtttttgtaccagtaccatgctgttttgtttactgtagtcttgtagcatagtttgaagtcaggtaatgtgatgccttcagt-tttctttttatttaggattgctttggctatttgggctctttttggttccatatgaatttcagaatag-ttttttcctagttctgtgaaaaatgacattggtagcttgatagaaatagcattgaatctgtagattgcttggggcagtgtggtcattttaatgatactgattcttccaatccattggcatgggatgtttttccattcgtttgtgtcacctatcatttctttaagttgtgttctgtagttttctctgtagagatttttcacttccttggttagatgtattcctaggaagtgtgtatatgtgtgtgtgtg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24855365 1108 - 73212453 ctgagctttttaataatcgccattctgactggtgtaagatggtatctcattgtggttttgattttgcatttctttgatgaataatgatgtggagca-ttttttcacatgtttg-ttggctgcttgtatgtcttgttttgagaagtgattgttcaagtcctttgcccactttttaatggggttatttg-tttttgcttgttcaattgtttaagttccttatagattctggatgttaggcctttgttggatgcacagtttgtgaatattttccctcattctgtaggttgtctatttactgtgttcattgtttcatttaactgtgcagaagctctttagtttaattaggtcccatatgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttcccaaggttgatgttcagaatgatgttttctagattttcttctagggtttttatagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctataaggtgaaa-gtcagggtctagtttcaatcatctgcatagagctagccagctatcccagcaccacttattgaatagggagtcctatcctcattgcttatttttgttaatgttatcaaagattagattgttgtatgagcatggctttatttctgggttc-----tctgttctttttgtttatgccactttatattttacaactttctgtttttgcaccagtaccatgctgttttgtttactgtagtcttatagcatagtttgaagtcaggtaatgtgatgccttcagt-tttctttttatttaggattgctttggctgtttgggctctttttggttccatatgaacttcagaatag-tttttttctagttctgtgaaaaataacattggtagcttgatagaaatagcgttgaatctgtagattgctttgggcagtgtggtcattttaatgatactgattcttccaatccattggcatggggtgtttttccattcatttgtgtcacctatcatttctttaagttgtgttctgtagttttctctgtagagatttttcacttccttggttagatgtattcctaggGAGTGTGTATATGTGTGTGTGTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48073414 1108 - 81552678 ctgagctttttaataatagccattctgactggtgtaagatggtatctcattgtggttttgattttgcatttctttgatgaataatgatgtggagca-ttttttcacatgtttg-ttggctgcttgtatgtcttgttttgagaagtgattgttcaagtcctttgcccactttttaatggggttatttg-tttttgctttttcaattgtttaagttccttatagattctggattttaggcctttgttggatgcacagtttgtgaatattttctctcattctgtaggttgtctgtttactgtgttcatagtttcattt-actgtgcagaagctctttagtttaattaggtcccacttgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttcccaaggttgatgttcagaatgttgttttccagattttctcctagggtttttatagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatg----aaag-gtcagggtctagtttcaatcatctacatagagctagccagctatcccagcaccacttattgaatagggaatcctatcctcattgcttatttttgttaatgttatcaaagattagattgttgtatgagcatggctttatttctgggttctctattctgttccttttgtctatgccactttatattttacaactttctgtttttgtaccagtaccatgctgttttgtttactgtagtcttatagcatagtttgaagtcaggtaatgtgatgccttcagt-tttatttttatttaggattgctttgactatttgggctctttttggttccatatgaatttcagaatag-tttttttctagttctgtgaaaaatgacattggtagcttgatagaaatagcattgaatctgtagattgctttgggcagtgtggtcattttaatgatactgattcttccagtccattggcatgggatgtttttccattcatttgtgtcacctatcatttctttaagtcatgttctatagttttctctgtagagatttttcacttccttggttagatgtattcctagggagtgtgtgtatgtgtgtgtgtg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53184311 1112 + 80904711 ctgagctttttaataatagccattctgactggtgcaagatggtatctcattgtggttttga-tttgcatttctttgatgaataatgatatggggca-ttttttcacatgtttg-ttggctgcttgtatgtcttattttgagaagtgattgttcaagtcctttgcccactttttaatggggttatttgttttttgcttgttcaattgtttaagttccttatagattctggatattaggcgtttattggatgcacagcttgtgaatattttctctcattctgtaggttgtctatttactgtgttgatagtttcattt-actgtgcagaagctctttagtttaattaggtcccgcttgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttctgaagattgatgctcagaatgatgttttctagattttctcctggggtttttacagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatgttggggtctagtttcaatcctctgcatagagctagccagctatctcagcaccacttatcgaatagggagtcctatcctcattgcttatttttgttaatgttatcaaagattagattgttgtatgagtgtggctttatttctggattctctattctgttccttttgtctatgccactttatattttacaaccttctgttttggtaccagtaccatgctgttttgtttactgtagtcttatagcgtagtttgaagtcaggtaatgtgatgcctccaga-tttctttttatttaggattgctttggctatttgggctcttttcggttccatatgaatttcagaatcgttttttttctggttctgtgaaaaatgagattggtagcttgataaaaatagcattgaatctgtagattgctttgggcagtgtagccattttaatgacattgattcttccaatccattggcatgggatgtttttccattcgtttgtgtcacctatcatttctttaagtcgtgttctgtaattttctctgtagagatttttcacttccttggttagatgtattcctagggggtgtgtgta--tgtgtgtgtg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52749102 1098 + 80997621 CTGAGctttttaataatagccattctgactggtgcaagatggtatctcattgtggttttga-tttgcatttctttgatgaataatgatatggggca-ttttttcacatgtttg-ttggctgcttgtatgtcttattttgagaagtgattgttcaagtcctttgcccactttttaatggggttatttgttttttgcttgttcaattgtttaagttccttatagattctggatattaggcgtttattggatgcacagcttgtgaatattttctctcattctgtaggttgtctatttactgtgttgatagtttcattt-actgtgcagaagctctttagtttaattaggtcccgcttgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttctgaagattgatgctcagaatgatgttttctagattttctcctggggtttttacagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatgttggggtctagtttcaatcctctgcatagagctagccagctatctcagcaccacttatcgaatagggagtcctatcctcattgcttatttttgttaatgttatcaaagattagattgttgtatgagtgtggctttatttctggattctctattctgttccttttgtctatgccactttatattttacaaccttctgttttggtaccagtaccatgctgttttgttta--------------cgtagtttgaagtcaggtaatgtgatgcctccaga-tttctttttatttaggattgctttggctatttgggctcttttcggttccatatgaatttcagaatcgttttttttctggttctgtgaaaaatgagattggtagcttgataaaaatagcattgaatctgtagattgctttgggcagtgtagccattttaatgacattgattcttccaatccattggcatgggatgtttttccattcgtttgtgtcacctatcatttctttaagtcgtgttctgtaattttctctgtagagatttttcacttccttggttagatgtattcctagggggtgtgtgta--tgtgtgtgtg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47751923 1113 + 74645514 CTgagctttttaataatagccattctgactggtgcaagatggtatctcattgtggttttga-tttgcatttctttgatgaataATGATATGgggca-ttttttcacatgtttg-ttggctgcttgtatgtcttgttttgagaattgattgttcaagtcctttgcccactttttaatggggttatttgttttttgcttgttcaattgtttaagttccttatagattctggatattaggcgtTTATTGGAtgcacagtttgtgaatattttctctcattctgtaggttgtctatttactgtgttgatagtttcattt-actgtgcagaagctctttagtttaattaggtcccacttgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttctgaAGATTGATGCTCAGAATgatgttttctagattttctcctggggtttttacagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaATGttggggtctagtttcaatccTCTGCATAGAGCTAGCCAGCTATCTCAGCACCACTTATCGAATAGGGAGTCCTatcctcattgcttatttttgttaatgttATCAAAGATTAGATTGTTGTACgagtgtggctttatttctagattctctattctgtttcttttgtctATGCCACTTTATATTTTACAAccttctgttttggtaccagtaccatgctgttttgtttactgtagtctTATAgcgtagtttgaagtcaggtaatgtgatgcctccagattttctttttatttaggattgctttggctatttgggctcttttcggttccatatgaatttcagaatcgttttttttctggttctgtgaaaaatgagatTGGTAGCTTGAtaaaaatagcattgaatctgtagattgctttgggcagtgtggccattttaatgatattgattcttccaatccattggcatgggatgtttttccattcgTTTGTGTCACCTATCATTTCTTTAAGTCGTGTTCTGTAATTTTCtctgtagagatttttcactttcttggttagatgtattcctagggggtgtgtgta--tgtgtgtgtg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10015769 1110 - 75148670 CTGAGctttttaataatagccattccgactggtgcaagatggtatctcattgtggttttga-tttgcatttctttgatgaataatgatgtggggca-ttttttcacatgtttg-ttggctgcttgtatgtcttgttttgagaagtgattgttcaagtcctttgcccactttttaatggagttgtttgttttttgcttgttcatttgtttaagttccttatagattctggatattaggcctttattggatgcacagtttgtgaatattttctctcattctgtaggttgtctatttactgtgttgatagtttcattt-actgtgcagaaactctttagtttaattaggtcccacttgtcaatttttgtgtttgttgcaattgcttttgaggacttagtcataaattctttctgaagattgacgctcagaatgatgttttatagattttctcctagggtttttacagtttgaggtcttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaaggtcggggtctgatttcaatcctctgcatagagctagccacctatctgagcaccacttatcaaatagggagtcctatcctcatagcttatttttgttaatgttatcaaagattaga-tgttgtatgagtgtggcttcatttctgggttctctattctgttccttttgtctatgccactttatattttacaaccttctgtttttgtaccagtaccatgctgttttgtttactgtagtcttatagcatagtatgaagtcaggtaatgtgatgcctccaga-tttctttttatttaggattgctttggctatttgggctcttttcagttccatatgaatttcagaatag-tttttttctggttctgtgaaaaatgagattggtagcttgataaaaacagcattgaatctgtagattgctttgggcagtgtggccattttaatgacattgattcttccaatccattggcatgggatgtttttccattcgtttgtgtcacctatcatttctttaagtcatgttctgtaattttctctgtagagatttttcacttccttggttagatgtattcctagggggtgtgtgta--tgtgtgtgtg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112899069 1104 + 159171411 CTGAGctttttaataatagcagctcagattggcataagatggtatcttattatggttttga-tttgtatttctttggtgaataatgatgtggagcatttttttcacatgtttc-ttggccacttgtatgtcttgtttagggaagtgattgttcaggtcgtttgcccactttttaatggggttgt----tttttgcctgttccattctttaagttccttatggattctggatattaggcctttgttggatgcatagtttgtgaatattttctcccattctgtaggttgtctttttatggtgttgatagttttgttt-gctgggtagaagctctttagtttaattaggtcccacttgtcaatttttgtgtttgtggcaattgcttttgaggacttagtcataaattctttcccaaggttgatgttcagaatggtgtttcctagattctcttctaggattcttatagtttgaggtcttaaatttaagtctttaa-ctatcttgaattaatttttctatttggtgaagggcaggggtctagtttcaatcttctgcatagagctagccagctatcccagcaccatttattgaata--gagtcctattctcattgcttatttttgttaatgttatcaaaggttagatggttgtatgcatgtgacttaatttctgagttctctattctgtttcatttgtctatgtcactttatattttacaactttctgtttttgtaccattaccatgctgtttggtttactgtagtcctatagcatagtttgaagtcaggtaatgtgatgcctttggt-tttctttttatttaggattgctttggctatttgggctctttttggttccatatgaatttcaggatag--ttttttctagttctgtgaaaaatggcattggtagtttgatagaaatagcattgaatctgtagcttgctttggttactgtggccattttaatggtatcgattcttccaatcccctggcatgggatgtttttccattaatttgtgtcatctatgatttctttaagctgtgttctgtacttttctctgtagagatctttcacttctttggttagatgtattcctaggGTGTGTGTGTA--TGTGTGCTTG i calJac3.chr5 I 2969 C 0 e canFam3.chr9 39444483 1815 - 61074082 I e mm10.chr11 99607414 1544 + 122082543 I a score=149211.000000 s hg38.chr17_JH159146v1_alt 203274 50 + 278131 gctattgaaatgTAAAATAAAGTTG--TAGAATGTACAACCATTTTGTGATT s panTro4.chr17 66322326 50 - 82630442 gctattgAAGTGTAAAATAAAGTTG--TAGAATGTGCAACCATTTTGTGATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24856473 50 - 73212453 GCTAATGAAGTGTAAAATAAAGTTG--TAGAATGTACAACCATTTTGTGATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48074522 50 - 81552678 gctattgAAGTGTAAAATAAAGTTG--TAAAATGTACAACCGTTTTGTGATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53185423 50 + 80904711 gctattgAAGTGTAAAATAAAGTCG--TAAAATATACAACCATTTTGTGATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52750200 50 + 80997621 gctattgAAGTGTAAAATAAAGTCG--TAAAGTATACAACCATTTTGTGATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47753036 50 + 74645514 gctattgaaGTGTAAAATAAAGTCG--TAAAATATACAACCATTTTGTGATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10016879 50 - 75148670 gctattgAAGTGTAAAATAAAGTCG--TAAAATATACAACCATTTTGTGATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112900173 50 + 159171411 GCTATTGAAGTGTAAAAAAAAGTTG--TAAAATACAAAACCATTTTGTGATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99608958 44 + 122082543 GCTAAGGAGATGTAA---GGACTTGGACAGGATGAACAAGCTTCTTT----- i mm10.chr11 I 1544 C 0 e canFam3.chr9 39444483 1815 - 61074082 I a score=1199382.000000 s hg38.chr17_JH159146v1_alt 203324 345 + 278131 AACATGTCTCTCACCATACT---AAGAAGTGTTTGACCTGAGGTCTAAATG-CAGGAAACT-TGTATTCTCCAG--GGTCTTTTCTGAACTTTTGGGATTATAATTACATT-------AGTAAGTAACTTATTTACTCTTACATTATTCA-----Tgtttctttaacttcaaaaacagaggtaattggccagaggttgcctaaggcttcttccacctctaacaccctgggcgttct-atgatGTTCCAACAGGTGTCGGATCAGTAAACACACCATTAGGCTGGGAATGTAAGTTTCAACCCAGGTGCGGCCTCCTAGCGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCAATGCATGCCTG s panTro4.chr17 66322376 345 - 82630442 AACATGTCTCTCACCATACT---AAGAAGTGTTTGACCTGAGGTCTAAATG-CAGGAAACT-TGTATTCTCCAG--GGTCTTTTCTGAACTTTTGGGATTATAATTACATT-------AGTAAGTAACTTATTTACTCTTACATTActca-----tgtttctttaacttcaaaaacagaggtaattggccagaggttgcctaaggcttcttccacctctaacaccctgggcgttct-atgatGTTCCAACAGGTGTCGGATCAGTAAACACACCATTAGGCTGGGAATGTAAGTTTCAACCCAGGTGCGGCCTCCCAGCGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCAATGCATGCCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24856523 345 - 73212453 AACATGTCTCTCACCATACT---AAGAAGTGTTTGACTTCAGGTCTAAATG-CAGGAAACT-TGTATTCTCCAG--GGTCTTTTCTGAACTTTTGGGATTATAATTACATT-------AGTAAGTAACTTATTTACTCTTACATTcctca-----tgtttctttaacttcaaaaacagaggtaattggccagaggttgcctaaggcttcttccacctctaacaccctgggcgttct-atgatGTTCCAACAGGTGTCGGATCAGTAAACACACCATTAGGCTGGGAATGTAAGTTTCAACCCAGGTGCAGCCTCCTAGCGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCGATGCATGCCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48074572 345 - 81552678 AACATGTCTCTCACCATACT---AAGAAGTGTTTGACTTGAGGTCTAAATG-CAGGAAACT-TGTATTCTCCAG--GGTCTTTTCTGAACTTTTGGGATTATAATTAGATT-------AGTGAGTAACTTATTTACTCTTACATTActca-----tgtttctttaacttcaaaaacagaggtaattggccagagtttgcctaaggcttcttccacctctaacaccctgggcgttct-atgatGTTCCAACAGGTGTTGGATCAGTAAACACGCCATTAGGCTGGGAATATAAGTTTCAACTCAGATGCAGCCTCCTAGCCTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCAATGCATGCCTG i nomLeu3.chr19 C 0 M 12435 s rheMac3.chr16 53185473 348 + 80904711 AACATGTCTCTCACCATACTAAGAAGAAGTGTTTGACTTAAGGTCTAAATG-CAGGAAACA-TGCATTCTCCAG--GGTCTTTTCTAAACTTTTGTGATTATAATTACATT-------AGTAAGTAACTAATTTACTCTTACATTActca-----tgtttctttaacttttgaaagagaggtaattggccagaggttgcctaaggcttcttccatctctaacaccctgggtattct-atgatGTTCCAACAGGTGTTGGATCAGTAAATACACCATTAGGCTGGGAATATAAGTTTCAACCCAGGTGCAGCCTCCCAGGGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCGATGCATGCCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52750250 348 + 80997621 AACATGTCTCTCACCATACTAAGAAGAAGTGTTTGACTTAAGGTCTAAATG-CAGGAAACA-TGCATTCTCCAG--GGTCTTTTCTAAACTTTTGTGATTATAATTACATT-------AGTAAGTAACTAATTTACTCTTACATTActca-----tgtttctttaacttttgaaagagaggtaattggccagaggttgcctaaggcttcttccatctctaacaccctgggtattct-atgatGTTCCAACAGGTGTTGGATCAGTAAATACACCATTAGGCTGGGAATATAAGTTTCAACCCAGGTGCAGCCTCCCAGGGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCGATGCATGCCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47753086 348 + 74645514 AACATGTCTCTCACCATACTAAGAAGAAGTGTTTGACTTAAGGTCTAAATG-CAGGAAACA-TGCATTCTCCAG--GGTCTTTTCTAAACTTCTGTGATTATAATTACATT-------AGTAAGTAACTAATTTACTCTTACATTACTCA-----TGTTTCTTTAACTTTTGAAAGAGAGGTAATTGGCCAGAGGTTGCCTGAGGCTTCTTCCACCTCTAACACCCTGGGTATTCT-ATGATGTTCCAACAGGTGTTGGATCAGTAAACACACCATTAGGCTGGGAATATAAGTTTCAACCCAGGTGCAGCCTCCCAGGGTGTTTCTTGTTGCAGAACATTTCTCAGGTGTTCGATGCACGCCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10016929 348 - 75148670 AACATGTCTCTCACCATACTAAGAAGAAGTGTTTGACTTAAGGTCTAAATG-CAGGAAACA-TGCATTCTCCAG--GGTCTTTTCTAAACTTTTGTGATTATAATTATATT-------AGTAAGTAAATAATTTACTCTTACATTActca-----tgtttctttaacttttgaaagagaggtaattggccagaggttgcctaaggcttcttccacctctaacaccctgggtattct-atgatGTTCCAACAGGTGTTGGATCAGTAAACAGACCATTAGGCTGGGAATGTAAGTTTCAACCCAGGTGCAGCCTCCCAGGGTGTTCCTTGTTGCAGAACATTTCTCAGGTGTTCGATGCATGCCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112900223 348 + 159171411 AACATGTATCTCACCACACTAAGAAGACGGGTTTGACTTAAGGTCTAATgt-caggaaact-tgcattctccag--ggtcttttctgaacctttgtgattataattacatc-------agtaagtcacttatttaatcttagattactca-----tttttctttagcttcaaaaacagaggtaattagccagaagttgcctaaggctccttccacctctaacatcctgggtgttct-ctaatGTGCCAACACATGTCAGATCAGTAAGCACACCCTCAGGCTGGCAACGTAAGTTTCAACCCAGGTGCAGCCTCCCGGAGTGTTTCTTGTTGTAGAACATTTCTCAGGTGTTTGATGCGTGCCTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99609002 348 + 122082543 --CATTTCT---ACCATATGGAGCACAAGTGTTGACTTCAAGGTGGAATTT-TGGGGAATTCTCTACTCTCTGGGAGGTAATTTATTGACACCTATAACTATAATTACATTTGACCTCAATTAATAACCAATGTATTTT----CTACCCATTAGCTATTTCTTTA-CTTCAAACTCAGAGATGATTCAGCAGACATAGCCTGGAGTTTCTCCCACCTC---AGCTTTGAAGATTTTCATGATGTACCAACAGGTAGCTGCTCAAGTGACAAGCTACCAGACTGGGCATGC-AGATGCTGTCTGAACACTGCTTCCTAACAGGCTGGTCAATGCAGGCAGGTTCTCAGTTGGCTGGTAAGGGTG-- i mm10.chr11 C 0 C 0 s canFam3.chr9 39446298 331 - 61074082 AACGTGTCTCCTACCATACTAAGAGGAAGTGTTTGACTTAAAGGCTTAATGTCAGGGGGCT-AACGTTCTCCTG--GGTCTTTTCTGAACATCAGTGATTATAATCATATT-------A-TAGGAAACTTACTTAATCTTTCATTACTCA-----TTGCTCTGCAACTTCATAAAC----TTGTTTTGCCAGATGTTGCCTAAGGGTCTTACCACCTCTAACATACTAGGTTTTCT-AAGCTGTACTAACAGGTATCA-TTCAGTGAATGAAACTTGAGCCCAGGGATGTAA---------TAGATGCAGCCTCCTTAC-CGAGTGTTGTTAAAGGACATCTCTCAGATGTTTG--GCATGTCTG i canFam3.chr9 I 1815 C 0 a score=1308996.000000 s hg38.chr17_JH159146v1_alt 203669 471 + 278131 GAATTTTGGGCACAAGTGACTCTGTACACATGATAAAGTCATAGTTGTATCCATCTTCCTGACTCAG---CTGTGCTCCATAAATGCCATTTACAATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTGTATAAGAGGATTATTCTGCATCTTGCTTTGAGTA------TCTCTAGAAAAAA--------AGAGACAATCTCCCAGAAGAAAATATCACAAAGACCATGATTTCTATGGTAGGAGTATTGAG-TTTATTAGAAAGCAGACAACATGATATAGGAGTTAGACTGGAGTCCTAGGA----AAAGTA-TTTCTCATCTGTGGTTGGTCTGAA---AAGGTGTCTTCAATGCATAGTGTGAGCTAGTATGAAGAGATGAGAAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGACCTGGCCATCTTCTGAGGGG-CCCTTCGTGATAACGGGCT s panTro4.chr17 66322721 471 - 82630442 GAATTCTGGGCACAAGTGACTCTGTGCACATGATAAAGTCATAGTTGTATCCATCTTCCTGACTCAG---CTGTGCTCCATAAATGCCATTTACAATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTGTATAAGAGGATTATTCTGCATCTTGCTTTGAGTA------TCTCTAGAAAAAA--------AGAGACAATCTCCCAGAAGAAAATATCACAAAGACCATGATTTCTATGGTAGGAGTATTGAG-TTTATTAGAAAGCAGACAACATGATATAGGAGTTAGACTGGAGTCCTAGGA----AAAGTA-TTTCTCATCTGTGGTTGGTCTGAA---AAGGTGTCTTCAATGCATAGTGTGAGCTAGTATGAAGAGATGAGAAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGACCTGGCCATCTTCTGAGGGG-CCCTTCGTGATAACGGGCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24856868 474 - 73212453 GAATTCTGGGCGCAAGTGACTCTGTACACATGATAAAGTCATAGTTGTACCCATCTTCCTGACTCAG---CTGTGCTCCATAAATGCCATTTACAATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTATATAAGAGGATTATTCTGCATCTTGCTTTGAGTA------TCTCTAGAAAAAA----AGAGAGAGACAATCTCCCAGAAGGAAATATCACAAAGACCATGATTTCTATGCTAGGAGTATTGAG-TTTATTAGAAAGCAGACAACATGATATAGGAGTTAGACTGGAGTCTTAGGA----AAAGTA-TTTTTCATCTGTGTTCGGTCTGAA---AAGGTGTCTTCAATGCATAGTGTGAGCTAGTATGAAGAGATGA-AAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGACCCGGCCATCTTCTGAGGGG-CCCTTCGTGATAACGGGCT i ponAbe2.chr17 C 0 T 7663 s rheMac3.chr16 53185821 479 + 80904711 GAATTCTGGGCACAAGTGACTCTGTACACATGATAAAGACATAGTTGTACTCATCTTCCTGACTCAG---CTGTGCTCCACAAATGCCATTTACGATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTATGTAAGAGGATTGTTCTGCATCTTGCTTTGAGTA------TCTCTAGACAAAA-----GAGAGATGCAATCTACCGGAAGGAAATATCACAAAGACCATGATTTCTATGCTAAGAATATTGAGTTTTATTAGAAAGCAGACAACATGATATGGGAGTTAGACTGGAGTCCTAGGAAGAGAGAGTA-TTTTTCATCTGTAGTTGGTCTGAA---AAGGTATCTTCAGTGCATAGGGTGAGCTAGTATGAAGAGATGAGAAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGTCCTGGCCATCTTCTGAAGGG-TTCTTCGTGATTACGGGCT i rheMac3.chr16 C 0 I 65 s macFas5.chr16 52750598 479 + 80997621 GAATTCTGGGCACAAGTGACTCTGTACACATGATAAAGACATAGTTGTACTCATCTTCCTGACTCAG---CTGTGCTCCACAAATGCCATTTACGATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTATGTAAGAGGATTGTTCTGCATCTTGCTTTGAGTA------TCTCTAGACAAAA-----GAGAGATGCAATCTACCGGAAGGAAATATCACAAAGACCATGATTTCTATGCTAAGAATATTGAGTTTTATTAGAAAGCAGACAACATGATATGGGAGTTAGACTGGAGTCCTAGGAAGAGAGAGTA-TTTTTCATCTGTAGTTGGTCTGAA---AAGGTATCTTCAGTGCATAGGGTGAGCTAGTATGAAGAGATGAGAAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGTGGTGAAGCCCTGAGGGGCAGCG-GGATGGTCCTGGCCATCTTCTGAAGGG-TTCTTCGTGATTACGGGCT i macFas5.chr16 C 0 I 65 s papAnu2.chr16 47753434 479 + 74645514 GAATTCTGGGCACAAGTGACTCTGTACACATGATAAAGACATAGTTGTACTCATCTTCCTGACTCAG---CTGTGCTCCACAAATGCCATTTACGATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTATGTAAGAGGATTGTTCTGCATCTTGCTTTGAGTA------TCTCTAGACAAAA-----GAGAGATGCAATCTACCGGAAGGAAATATCACAAAGACCATGATTTCTATGCTAAGAATATTGAGTTTTATTAGAAAGCAGACAACATAATATGGGAGTTAGACTGGAGTCCTAGGAAGAGAGAGTA-TTTTTCATCTGTAGTTGGTCTGAA---AAGGTATCTTCAGTGCATAGGGTGAGCTAGTATGAAGAGATGAGAAATGGGCTTCTCAAGGAAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGTCCTGGCCATCTTCTGAAGGG-CCCTTCGTGATAACGGGCT i papAnu2.chr16 C 0 I 65 s chlSab2.chr16 10017277 479 - 75148670 GAATTCTGGGCACAAGTGACTCTGTACACATGATAAAGACATAGTTGTGCTCATCTTCCTGACTCAG---CTGTGCTCCACAAATGCCATTTACAATGATTAT-AAGAAAACTACTCAGACTTAAGTTAT------GAGAACTACATAAGAGGATTATTCTGCATCTTGCTTTGAGTA------TCTCTAGACAAAA-----GAGAGATGCAATCTACCGGAAGGAAACATCACAAAGACCATGATTTCTATGCTAAGAATATTGAGTTTTATTAGAAAGCAGACAACATGATATGGAAGTTAGACTGGAGTCCTAGGAAGAGAGAGTA-TTTTTCATCTGTAGTTGGTCTGAA---AAGGTGTCTTCAGTGCATAGTGTGAGCTAGTATGAAGAAATGAGAAATGGGCTTCTCAAGGCAACGTGTATTGCTCTGCGGTGAAGCCCTGAGGGGCAGCG-GGATGGTCCTGGCCATCTTCTGAAGGG-CCCTTCGTGATAACGGGCT i chlSab2.chr16 C 0 I 65 s calJac3.chr5 112900571 468 + 159171411 GAATTCTGAGCAC-AGTGACTCTGTACACATGATAGAGACATAGTTGTAACCATC-TCCTCACTCAG---CTGTGCTCCATAAATGCCATTTACAATGCTTAT-AAGAAAACTACTCAGACTTAGGTTAT--TTCAGAGAACTATGTTAGAGGATTATTCTGCA------------TA------TCTCTAGACAAAA------AGTGAGACAATCTACCAGAAGGAACTGTCACAGAGACCATGATTTCTATGTCAGGAGTATTGAG-TTTATTAGAAAGCAGACAACATGATAGAGGAGTTAGACTGGAGTCCTAGGAAGAGAGAATT-TTCTTCAGCTGTAGTTTGTCTGAA---AAGCTGTCTTCAATATATAGTGTGAGCTAGTATGAAGACATGAGGAACGGGCTTCTCAAGGAAATGTGTATTGTTCTGCAGTGAAGCCCTGAGAGGCAGCA-GGATGGACCTGGCCATCTATTGAAGGGACCCTTCATGAAAATGGGCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99609350 434 + 122082543 GAATTTGGATTAT--GTAA---TGAACAGATGGTGA----CTGACTGTCACCATTCTCGT--------------------CATGTGCCATTTGCAGTGAGCCCAAAGAGAACAACTCAGACATAAGTTGTTTTTCAGAAAAATT-----GAAGGTTATTCTGAACCTTGTCTTGAAAAAGAACCTCTCTGGT----------GATTGAAGCAACAGACCAAAGGAAAACATCATAACACTCGTGATATCTATGCTGAGAATGCTGAG-TTTATTAGAAAACAGACAATACCAC-----GGTTAGATCACAGTATAAAGAGGGAACAATG-TTCTCTATCAGAAAGGGGCCCTAAAAGAAGATATCTTCCATGTATAGGTTGAAACAGTTTGAAGAC--------TAGACTACTAAAGAAATTATATA------TATAATCATGTCCTGAGTGACAGCA-GGATGAACCTAGCCATCACCT-AGGGA-TCCTTAGTGGTAATG---- i mm10.chr11 C 0 C 0 s canFam3.chr9 39446629 479 - 61074082 -GATTGTGAGCACATGTGACTCTATATATGTGGTGAAGATACAGCTATGCCTACCTTTCTCACTTGGATATTGTGCCTTATAAATGCTCCTTACAAGAACAAT-GAG---ATTACCCAGACCTAAGTTAT--TTCAGTGAACAATTTGAGAGAATTATTCTGCATCCTGCTTTGAATA------TGTCTGAACAAAAAAAGAGAGAGACAAAACCTACTTAAAGGAAGTATCACAAAGACCACGATTTCTATGCTGGAAATACTAAG-TTTATTAGAAAACAGAAGACATGATTGAGGAGTTAGACAGGGGTCCTGAGAGGACAGAGTACTCTCCCATCAGTAGTCGGTCTGAA---AAGGGGGCCCCAATGCGTACTCTGAGTTAGTTTGAAGAAACGGGAAATGGGCTTCTCAGGAAAAGTCATGCTTTTCT--------GTCCTGAAGGGCAGGATGGATGGACTTCACCATCTACT-AGCGA-CCCTCAATGATGATATACT i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=2209.000000 s hg38.chr17_JH159146v1_alt 204140 3 + 278131 GCT s panTro4.chr17 66323192 3 - 82630442 GCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24849679 3 - 73212453 GCT i ponAbe2.chr17 T 7663 C 0 s calJac3.chr5 112901039 3 + 159171411 GCT i calJac3.chr5 C 0 I 3 s mm10.chr11 99609784 1 + 122082543 --T i mm10.chr11 C 0 C 0 s canFam3.chr9 39447108 3 - 61074082 TCT i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10017756 65 - 75148670 I e papAnu2.chr16 47753913 65 + 74645514 I e macFas5.chr16 52751077 65 + 80997621 I e rheMac3.chr16 53186300 65 + 80904711 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=5210.000000 s hg38.chr17_JH159146v1_alt 204143 4 + 278131 CAGC s panTro4.chr17 66323195 4 - 82630442 CAGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24849682 4 - 73212453 CAGC i ponAbe2.chr17 C 0 C 0 s calJac3.chr5 112901045 4 + 159171411 CAGC i calJac3.chr5 I 3 C 0 s mm10.chr11 99609785 4 + 122082543 CAGT i mm10.chr11 C 0 I 4615 s canFam3.chr9 39447111 4 - 61074082 CAGC i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10017756 65 - 75148670 I e papAnu2.chr16 47753913 65 + 74645514 I e macFas5.chr16 52751077 65 + 80997621 I e rheMac3.chr16 53186300 65 + 80904711 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=2865.000000 s hg38.chr17_JH159146v1_alt 204147 2 + 278131 AG s panTro4.chr17 66323199 2 - 82630442 AG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24849686 2 - 73212453 AG i ponAbe2.chr17 C 0 C 0 s calJac3.chr5 112901049 2 + 159171411 AG i calJac3.chr5 C 0 C 0 s mm10.chr11 99614404 2 + 122082543 AG i mm10.chr11 I 4615 C 0 s canFam3.chr9 39447115 2 - 61074082 AG i canFam3.chr9 C 0 I 3 e chlSab2.chr16 10017756 65 - 75148670 I e papAnu2.chr16 47753913 65 + 74645514 I e macFas5.chr16 52751077 65 + 80997621 I e rheMac3.chr16 53186300 65 + 80904711 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=49322.000000 s hg38.chr17_JH159146v1_alt 204149 41 + 278131 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCC s panTro4.chr17 66323201 41 - 82630442 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTTGGCTGGCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24849688 41 - 73212453 GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCC i ponAbe2.chr17 C 0 I 7678 s calJac3.chr5 112901051 41 + 159171411 GGGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCC i calJac3.chr5 C 0 I 15 s mm10.chr11 99614406 41 + 122082543 GGGGAGGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCA i mm10.chr11 C 0 C 0 s canFam3.chr9 39447120 41 - 61074082 GGGGAGGTCCTACAGGTGGTGCGGCAGGGGGCAGGCTGGCA i canFam3.chr9 I 3 C 0 e chlSab2.chr16 10017756 65 - 75148670 I e papAnu2.chr16 47753913 65 + 74645514 I e macFas5.chr16 52751077 65 + 80997621 I e rheMac3.chr16 53186300 65 + 80904711 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=34416.000000 s hg38.chr17_JH159146v1_alt 204190 8 + 278131 GCAGGGGG s panTro4.chr17 66323242 8 - 82630442 GCAGGGGG i panTro4.chr17 C 0 I 15 s ponAbe2.chr17 24857407 8 - 73212453 GCAGGGGG i ponAbe2.chr17 I 7678 C 0 s rheMac3.chr16 53186365 8 + 80904711 GCAGGGGG i rheMac3.chr16 I 65 C 0 s macFas5.chr16 52751142 8 + 80997621 GCAGGGGG i macFas5.chr16 I 65 C 0 s papAnu2.chr16 47753978 8 + 74645514 GCAGGGGG i papAnu2.chr16 I 65 C 0 s chlSab2.chr16 10017821 8 - 75148670 GCAGGGGG i chlSab2.chr16 I 65 C 0 s calJac3.chr5 112901107 8 + 159171411 GCAGGGGG i calJac3.chr5 I 15 C 0 s mm10.chr11 99614447 8 + 122082543 GCAGGGGG i mm10.chr11 C 0 I 15 s canFam3.chr9 39447161 8 - 61074082 GCAGGAGG i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=85962.000000 s hg38.chr17_JH159146v1_alt 204198 24 + 278131 ---------------ACTGCACAGACACAGGCTGGCAGC s panTro4.chr17 66323265 24 - 82630442 ---------------ACTGCACAGACACAGGCTGGCAGC i panTro4.chr17 I 15 C 0 s ponAbe2.chr17 24857415 24 - 73212453 ---------------ACTGCACAGACACAGGCTGGCAGC i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53186373 24 + 80904711 ---------------ACTGCACAGACACAGGCTGGCAGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52751150 24 + 80997621 ---------------ACTGCACAGACACAGGCTGGCAGC i macFas5.chr16 C 0 I 5058 s papAnu2.chr16 47753986 24 + 74645514 ---------------ACTGCACAGACACAGGCTGGCAGC i papAnu2.chr16 C 0 I 5062 s chlSab2.chr16 10017829 24 - 75148670 ---------------ACTGCACAGACACAGGCTGGCAGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112901115 24 + 159171411 ---------------ACTGCACTGACACAGGCTGGCAGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99614470 24 + 122082543 ---------------CCTGCACTGAGATGGGCTGGCAGC i mm10.chr11 I 15 C 0 s canFam3.chr9 39447169 39 - 61074082 GGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAGC i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=26190.000000 s hg38.chr17_JH159146v1_alt 204222 6 + 278131 AGGTGG s panTro4.chr17 66323289 6 - 82630442 AGGTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857439 6 - 73212453 AGGTGG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53186397 6 + 80904711 AGGTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52756232 6 + 80997621 AGGTGG i macFas5.chr16 I 5058 C 0 s papAnu2.chr16 47759072 6 + 74645514 AGGTGG i papAnu2.chr16 I 5062 C 0 s chlSab2.chr16 10017853 6 - 75148670 AGGTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112901139 6 + 159171411 AGGTGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99614494 6 + 122082543 AGGTGG i mm10.chr11 C 0 T 4711 s canFam3.chr9 39447208 6 - 61074082 AGGTGG i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=35705.000000 s hg38.chr17_JH159146v1_alt 204228 11 + 278131 TGGCTCAGCAG s panTro4.chr17 66323295 11 - 82630442 TGGCTCAGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857445 11 - 73212453 TGGCCCAGCAG i ponAbe2.chr17 C 0 I 5438 s rheMac3.chr16 53186403 11 + 80904711 TGGCCCAGCAG i rheMac3.chr16 C 0 I 5053 s macFas5.chr16 52756238 11 + 80997621 GGTCTCAGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47759078 11 + 74645514 GGTCTCAGCAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10017859 11 - 75148670 TGGCCCAGCAG i chlSab2.chr16 C 0 T 114 s calJac3.chr5 112901145 11 + 159171411 TGGTCCAGCAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99609789 11 + 122082543 TGGCTCAGCAG i mm10.chr11 T 4711 I 4711 s canFam3.chr9 39447214 11 - 61074082 AGGCCCAGCAG i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=25744.000000 s hg38.chr17_JH159146v1_alt 204239 34 + 278131 GAGGAGGTCCTGCAG---GTGGTGCTGCAAGGGGTCG--------------- s panTro4.chr17 66323306 34 - 82630442 GAGTAGGTCCTGCAG---GTGGTGCTGCAAGGGGTCG--------------- i panTro4.chr17 C 0 T 90 s ponAbe2.chr17 24862894 34 - 73212453 GAGGAGGTCCTGCAG---GTGGTGCTGCAAGGGGTCG--------------- i ponAbe2.chr17 I 5438 I 15 s macFas5.chr16 52756249 34 + 80997621 GAGAAGGTCCTGCAG---GTGGTGCTGCAAGGCGTCG--------------- i macFas5.chr16 C 0 I 15 s papAnu2.chr16 47759089 34 + 74645514 GAGAAGGTCCTGCAG---GTGGTGCTGCAAGGCGTCG--------------- i papAnu2.chr16 C 0 I 15 s calJac3.chr5 112901156 11 + 159171411 ---CAGGGCCTGCA-------------------------------------- i calJac3.chr5 C 0 C 0 s mm10.chr11 99614511 34 + 122082543 ---CAAGGCCTGCAGACCACAGCTGTGCAAGAGGTGG--------------- i mm10.chr11 I 4711 I 4 s canFam3.chr9 39447225 49 - 61074082 ---CAGGGGCGGCAGACCACGGCAGTGCAGGACGTGGGGCAGCAGCTGATGG i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10017870 114 - 75148670 T e rheMac3.chr16 53186414 5053 + 80904711 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=12651.000000 s hg38.chr17_JH159146v1_alt 204273 25 + 278131 ------------------GCTGGCCGCAGGGGG-ACTGCA------CAGA s panTro4.chr17 66323250 25 - 82630442 ------------------GCCGGCAGCAGGGGG-ACTGCA------CAGA i panTro4.chr17 T 90 C 0 s ponAbe2.chr17 24862943 25 - 73212453 ------------------GCCGGCAGCAGGGGG-ACTGCA------CAGA i ponAbe2.chr17 I 15 C 0 s macFas5.chr16 52756298 25 + 80997621 ------------------GCCGGCAGCAGGGGG-ACTGCA------CAGA i macFas5.chr16 I 15 C 0 s papAnu2.chr16 47759138 25 + 74645514 ------------------GCCGGCAGCAGGGGG-ACTGCA------CAGA i papAnu2.chr16 I 15 C 0 s calJac3.chr5 112901167 18 + 159171411 ---------------------GACCACAGAGG----TGCA------C-GA i calJac3.chr5 C 0 C 0 s mm10.chr11 99614549 28 + 122082543 ------------------GCAGGTGATGGGGCG-ACAGCAGCCCTGC--- i mm10.chr11 I 4 T 4777 s canFam3.chr9 39447274 40 - 61074082 GGCGGCAGCAGCCCTCCTGCAGGGAGCAGGGGTCACAGCA---------- i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10017870 114 - 75148670 T e rheMac3.chr16 53186414 5053 + 80904711 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=16355.000000 s hg38.chr17_JH159146v1_alt 204298 13 + 278131 CACAGGCTGGCAG s panTro4.chr17 66323275 13 - 82630442 CACAGGCTGGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24862968 13 - 73212453 CACAGGCTGGCAG i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52756323 13 + 80997621 CACAGGCTGGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47759163 13 + 74645514 CACAGGCTGGCAG i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112901185 10 + 159171411 CGTGG---GGCAG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39447314 13 - 61074082 CACAGGGCGGCGA i canFam3.chr9 C 0 C 0 e mm10.chr11 99614577 4777 + 122082543 T e chlSab2.chr16 10017870 114 - 75148670 T e rheMac3.chr16 53186414 5053 + 80904711 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=2800.000000 s hg38.chr17_JH159146v1_alt 204311 1 + 278131 C s panTro4.chr17 66323288 1 - 82630442 C i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24862981 1 - 73212453 C i ponAbe2.chr17 C 0 T 105 s macFas5.chr16 52756336 1 + 80997621 C i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47759176 1 + 74645514 C i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112901195 1 + 159171411 C i calJac3.chr5 C 0 C 0 s mm10.chr11 99609800 1 + 122082543 C i mm10.chr11 T 4777 C 0 s canFam3.chr9 39447327 1 - 61074082 C i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10017870 114 - 75148670 T e rheMac3.chr16 53186414 5053 + 80904711 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=3276.000000 s hg38.chr17_JH159146v1_alt 204312 1 + 278131 A s panTro4.chr17 66323289 1 - 82630442 A i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24862877 1 - 73212453 A i ponAbe2.chr17 T 105 C 0 s rheMac3.chr16 53191467 1 + 80904711 A i rheMac3.chr16 I 5053 C 0 s macFas5.chr16 52756337 1 + 80997621 A i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47759177 1 + 74645514 A i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112901196 1 + 159171411 A i calJac3.chr5 C 0 C 0 s mm10.chr11 99609801 1 + 122082543 A i mm10.chr11 C 0 C 0 s canFam3.chr9 39447328 1 - 61074082 A i canFam3.chr9 C 0 I 4756 e chlSab2.chr16 10017870 114 - 75148670 T e nomLeu3.chr19 48074917 12435 - 81552678 M a score=16365.000000 s hg38.chr17_JH159146v1_alt 204313 7 + 278131 GGTGGTG s panTro4.chr17 66323290 7 - 82630442 GGTGGTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24862878 7 - 73212453 GGTGGGG i ponAbe2.chr17 C 0 T 5543 s rheMac3.chr16 53191468 7 + 80904711 GGTGGGG i rheMac3.chr16 C 0 T 5175 s macFas5.chr16 52756338 7 + 80997621 GGTGGTG i macFas5.chr16 C 0 T 5268 s papAnu2.chr16 47759178 7 + 74645514 GGTGGTG i papAnu2.chr16 C 0 T 5272 s calJac3.chr5 112901197 7 + 159171411 GGTGATG i calJac3.chr5 C 0 I 2 s mm10.chr11 99609802 7 + 122082543 GGTGTTG i mm10.chr11 C 0 C 0 s canFam3.chr9 39452085 7 - 61074082 GGCGGTT i canFam3.chr9 I 4756 C 0 e chlSab2.chr16 10017870 114 - 75148670 T e nomLeu3.chr19 48074917 12435 - 81552678 M a score=691.000000 s hg38.chr17_JH159146v1_alt 204320 3 + 278131 --GCT s panTro4.chr17 66323297 3 - 82630442 --GCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857342 3 - 73212453 --GCT i ponAbe2.chr17 T 5543 C 0 s rheMac3.chr16 53186300 3 + 80904711 --GCT i rheMac3.chr16 T 5175 C 0 s macFas5.chr16 52751077 3 + 80997621 --GCT i macFas5.chr16 T 5268 C 0 s papAnu2.chr16 47753913 3 + 74645514 --GCT i papAnu2.chr16 T 5272 C 0 s chlSab2.chr16 10017756 3 - 75148670 --GCT i chlSab2.chr16 T 114 C 0 s calJac3.chr5 112901206 1 + 159171411 --G-- i calJac3.chr5 I 2 T 162 s canFam3.chr9 39452092 3 - 61074082 CAG-- i canFam3.chr9 C 0 C 0 e mm10.chr11 99609809 0 + 122082543 C e nomLeu3.chr19 48074917 12435 - 81552678 M a score=10476.000000 s hg38.chr17_JH159146v1_alt 204323 3 + 278131 CAG s panTro4.chr17 66323300 3 - 82630442 CAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857345 3 - 73212453 CAG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53186303 3 + 80904711 CAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52751080 3 + 80997621 CAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47753916 3 + 74645514 CAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10017759 3 - 75148670 CAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112901045 3 + 159171411 CAG i calJac3.chr5 T 162 C 0 s canFam3.chr9 39452095 3 - 61074082 CAG i canFam3.chr9 C 0 T 4981 e mm10.chr11 99609809 0 + 122082543 C e nomLeu3.chr19 48074917 12435 - 81552678 M a score=3197169.000000 s hg38.chr17_JH159146v1_alt 204326 976 + 278131 CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTGGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACGCTGGCTGGGAGCTGATGA----CCCCCAGGACACAAGGTCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCAG-CAGATTAGTAAGTTTTGTAGACA-TTGTTTAGATGCTCAGGTACACATAAAAGTCTA----TTTTCCTTATTTAGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCGTTATAATTCAATGACGCTTTTGCTAGTTGCTGTTTTGATAGCTCAAAGCAGCTGTTGTGCTCTGCATGCTCTGAGGGTTATTACTTGCTAGCAGTTGAAGTAAAGCGAGCATCTCAAGTTGTTAGTATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAGGATTTCTCAGTAAAAGAAGAATTTTCCTGTC-CCCTTTTTGGAGGTACAAGAATGCATTTTAGTAGGTTTCCATCA s panTro4.chr17 66323303 976 - 82630442 CAGGAGTAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCATAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACGCTGGCTGGGAGCTGATGA----CCCCCAGGACACAAGGTCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCAG-CAGATTAGTAAGTTTTGTAGACA-TTGTTTAGATGCTCAGGTACACGTAAAAGTCTA----TTTTCCTTATTTAGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCGTTATAATTCAATGACGCTTTTGCTAGTTGCTGTTTTGATAGCTCAAAGCAGCTGCTGTGCTCTGCATGCTCTGAGGGTTATTACTTGCTAGCAGTTGAAGTAAAGCGAGCACCTCAAGTTGTTAGCATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAGGATTTCTCAGTAAAAGAAGAATTTTCCTGTC-CCCTTTTTGGAGGTACAAGAATGCATTTTAGTACGTTTCCATCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857348 976 - 73212453 CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGACACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGCCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACGCTGGCTGGGAGCTGATGA----CCCCCAGGACACGAGGTCATTTCCTTGTTT-T-CACTTATTCTTCTTTAAATAACGCTAG-CAGATTAGTAAGTTTTCTAGACA-TTGTTTGGATGCTCAGGTACACATAAAAGTCTA----TTTTCCTTATTTAGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCGTTATAATTCAATGACGCTTTTGCTAGTTGCTGTTTTGATAGTACAAAGTAGCTGTTGTGCTGTGCATGCTCTGAGGGTTATTACTTGCTATCAGTTGAAGTGAAGTGAGCACCTCAAGTTGTTAGCATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAGGATTTCTCAGTAAAACAAGAATTTTCCTGTC-CCCTTTTTGGAGGTACAAGAATGCATTTTAGTAGGTTTCCATCA i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53186306 970 + 80904711 CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTTCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGC-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGATGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCTGGGAGCTGATGA----CCCCCAGGACACGAGGTCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCTG-CAGATTAGTAAGTTTTCTAGACA-TTGTTTAGATACTCAGGTACACATAAATGTCTATTTGTTTTCCTTATTTAGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCATTATAATTCAATGATGCTTTTGCCAGTTGCTGTTTTGATAGCACAAAGCAGCTGTCATGCTCTGCATGCTCTGAGGG---TTACTTGCTAGCAGT-----TGAAGT--ACACCTCAAGTTGTTAGCATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAAGATTTCTCAGTAAAAGAAGAATTTTCCAGTC-CTCTTTTTGGAGGTACAAGAATGCATTTTAGTAGGTTTCCATCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52751083 970 + 80997621 CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGTGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTTCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCAGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGATGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCTGGGAGCTGATGA----CCCCCAGGACACGAGGTCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCTG-CAGATTAGTAAGTTTTCTAGACA-TTGTTTAGATACTCAGGTACACATAAATGTCTATTTGTTTTCCTTATTTAGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCATTATAATTCAATGATGCTTTTGCCAGTTGCTGTTTTGATAGCACAAAGCAGCTGTCATGCTCTGCATGCTCTGAGGG---TTACTTGCTAGCAGT-----TGAAGT--ACACCTCAAGTTGTTAGCATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGGTAGTTTAAAAGTCAGGATTTCTCAGTAAAAGAAGAATTTTCCAGTC-CTCTTTTTGGAGGTACAAGAATGCATTTTAGTAGGTTTCCATCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47753919 974 + 74645514 CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTAATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAACAGCAGGGGTCGCGGTAGCAGCA-GGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAggagccggtcatggtggtgtcTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCTAGGAGCTGATGA----CCCCCAGGACACGAGGTCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCTG-CAGATTAGTAAGTTTTCTAGACA-TTGTTTAGATACTCAGGTACACATAAATGtctatttgttttccttatttagtGTAGACCC-attatattttgctatttatGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCTCCAATTATCATTATAATTCAATGATGCTTTTGCCAGTTGCTGTTTTGATAGTACAAAGCAGCTGTCATGCTCTGCATGCTCTGAGGG---TTACTTGCTAGCAGTTGAAGTGAAGT--ACACCTCAAGTTGTTAGCATTCTTTGCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAGGATTTCTCAGTAAAAGAAGAATTTTCCAGTC-CTCTTTTTGGAGGTACAAGAATGCATTTTAGTAGGTTTCCATCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10017762 974 - 75148670 CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTTGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGTCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCACAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGTTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCTGGGAGCTGATGA----CCCCCAGGACACGAGATCATTTCCTTGTTT-T-CACTTATTCTTCCTGAAATAACACCTG-CAGATTAGTAAGTTTTCTAGACA-TTGTTTAGATACTCAGGTACACATAAAAGTCTATTTGTTTTCCTTATGTGGTGTAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTCCCCAATTATCGTTATAATTCAATGATGCTTTTGCCAGTTACTGTTTTGATAGCACAAAGCAGCTGTCATGCTCTGCATGCTCTGAGGG---TTACTTGCTAGCAGTTGAAGTGAAGT--AAACCTCAAGTTGTTAGCATTCTTTCCCACTGCTAAGCTTCCT------GGGCAAAA---------------------CAAGTTGAGGATAATACTACA-----GGGATAGTTTAAAAGTCAGGATTTCTCAGTAAAAGAAGAATTTTCCAGTC-CTCTTTTTGGAGGTACAAGAATGCATTTCAGTAGGTTTCCATC- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112901048 966 + 159171411 CAGGGGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACTGACACAGGCTGGCAGCAGGTGGTGGTCCAGCAGCAGGGCCTGCAGACCACAGAGGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACTGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGCAGCTCAGGGAGGAGAAGGTGGATCCGCAGCAGGAGCCGCACATGGTGGTGTCTGAGACTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCTTTCTGGGCCCTTTATATACCCTGGCTGGGAGCTGATCA-----CCCCAGGACATGAAGTCATTTCCTTGTTT-T-CACTTATTCTTTCTGATATAACACCAG-CAGATTAGTAAGTTCTCTAGACA-TTGTTTAGATGTTCAGGTACCCATAAAAGTCCATTTGTTTTCCTTATTTAGCAGAGATCCAATTATATTTTGCTATTTATGGTTCAAATATGAAATTAATGACCCTAACTTCAAAGTCTCCAATTATTGTTATAATTCAATGATGCTTTTGCCAGTTGCTGTTTTGATAGCACAAAGTAGCTGC---------CATGCTCTGAAGC---TTACTTGCTAGCAGTTGAAGTGAAGTGAGTGCCTTAAGTTGTTAGCATTCTTTTCCACTGCTAGGCTTCCT------GGGCAAAA---------------------AAAGTTGAGGATAATACTGAG-----GGAGTAGTTTAAAAGTCAGGATTTCTCCATGA---AAGAATTTTCCAGTCTTTTTTTTTGGAGATACAAGAATGCATTTCAGTAGGCTTCCATCA i calJac3.chr5 C 0 C 0 s mm10.chr11 99609809 917 + 122082543 CATGGGGAGGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCAGCAAGGGGGCCTGCAGCAGGGAGCCTGCACTGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAAGGCCTGCAGACCACAGCTGTGCAAGAGGTGGGGCAGCAGGTGATGGGGCGACAGCAGCCCTGCTGCAGGCTGCAGGGGTCACAGCAGATGGGGCGGCGGCAGGGCTCACAGATGGGCCTGGTGCAGTGGGGCACACAGGTTACAGGGCGACACACTGTGGTCTGGCAGGACACTGGGCGGCAGCAGCAGGGGTCCCTGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCTCCACAGCTCTGGGAGGAGAA---GGATCCACAGCAGGAGCCTGTCATGGTTGTGTCTG-GGCTGGAGTGGGGCTGAGAAGTGAAGAGAGGTTGGGAGTTCTCAGGTGTG-ATGT-CTCCTCTGGATTGGGTCCCTTTATATACCTGGGC--AGTGCTGATGA---CCCCCCAGGACTGAGGACAATTTCCTTGTTT-TGGGTTTGTCCCTTCTAGAAGGGCATTGG-TGGATTGGTAAGTTCTCTGGGTG-TGTTTCAAGTGCTCAGGACCTCGTAAAAGATTATTTGTGTCCCTTACTTAATGACAGCTC-ATTATATCTTGCTATTTATGGTTCAAATATGAACTTAATGGCTCTAACTTCAAAGTCGCCAATTACGTTCATAG-----------TTTTGCTAGGTAGTATTTTGATGTCGCAAAAGAGCTCC---------TGTGCCATTGGGG---TTACTTACTCACAGTGGAAGTGAATTCAGCAAATCATCTTGCTGT--TTCTTCTCCATTGTTCAACTCTCT------GCACAAAA---------------------CAAAGCAAGAGTGTTG--ACA-----GAGTTAAT---------------------------ACGAATTTTCTA----TCTCCTCGGGAGCTCCAGGAACACACCCTAGCAGGCCTGTATT- i mm10.chr11 C 0 C 0 s canFam3.chr9 39447117 1014 - 61074082 CAGGGGGAGGTCCTACAGGTGGTGCGGCAGGGGGCAGGCTGGCAGCAGGAGGGGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAGGGGCGGCAGACCACGGCAGTGCAGGACGTGGGGCAGCAGCTGATGGGGCGGCAGCAGCCCTCCTGCAGGGAGCAGGGGTCACAGCACACAGGGCGGCGACAGGGCTCACAGATGGGGCGCGTGCAGCGGCAGGTGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGCTCACGGGGCGACAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGGAGGGCTGGCAGCATTCTGTGCCACAGCCCTGGGAGGAGCAGATGGAACCACAGCAGGAGCCTGACATGGTGATATGTGGGGCTGTTTAGGTT-TGGACTGGTGAGAGGATTTGGGTGTTGTCAGGTGTGAATGTCTTTGTCCTGCTTTGGGCCCTTTATATACCCTGCCCAGGTGCTGATGATGTCTCCCATGGACACATGATCACTTCCTTGTTTAT-TGTTTATTCTTTCTGAAATGGCACTAGATAGGCTACCAA-TTTCCTCGACATTTTTTTAGGTGCTCACCTACTCATGAAACACCATTTGCTTTCCTTATTTAATAGAGACCC-ATTATATTTTGCTATTTATGGTTCAAATATGAATTTAATGACCCTAACTTCAAAGTTTCCAATTATCTTCATAATTCAGTGATGTTTTTGCCAATTGATGTTTTGATAGCACAAAGTAGCTGT---------CATGCTCTTAGGG---TTACTTACTAATAGTGGAAGTAAATT-----CCCCAAGTTGTGAGTATCTGTTTCCACTGCTAAGGTTCCCTCCTTAGGGAAGGAAGCTTAAGCTTTCCCTAAGCTTAAGTTTAGGAAAAAAAAAAAAAAAGGGACTATTTTAAAAGTCATGGTCTCTCAGGAAAATAAG--TTTTGCTGTG-TACTTTTTGGAGCTACAGGAATGCACCTTATCATCTTCTCAGCA i canFam3.chr9 T 4981 I 839 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=16380.000000 s hg38.chr17_JH159146v1_alt 205302 8 + 278131 TCCAGTGG--- s panTro4.chr17 66324279 8 - 82630442 TCCAGTGG--- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24858324 8 - 73212453 TCCAGTGG--- i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53187276 8 + 80904711 TCCAGTGG--- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52752053 8 + 80997621 TCCAGTGG--- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47754893 8 + 74645514 TCCAGTGG--- i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112902014 11 + 159171411 TCCAGTGGGTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99610726 8 + 122082543 TTCAATGG--- i mm10.chr11 C 0 C 0 e canFam3.chr9 39448131 839 - 61074082 I e chlSab2.chr16 10018736 0 - 75148670 C e nomLeu3.chr19 48074917 12435 - 81552678 M a score=1633482.000000 s hg38.chr17_JH159146v1_alt 205310 562 + 278131 TTTTTGTCTTAGAGATATGTTCATTGATTTCTATGGTTGTATCTTTCCAGACCAAGGTAAATTTCACTGT----AATCTTCATGATAGCCAGTAtcattaagttg---taactatgttccaagcatcatattaaa--aaatacatgcattaatctaatcttcataacattcttaggatgtggatattgtt-tatttctcatttcacacataaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggagccaatactcattccagaaatatctgT-GGGAACATTATTTATCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAGAATGGATTGTAGGTACCACATTCCCAGGTATTAAGGAATGTCTATTTTATTTAGGAGCTTTTACAGTGTATTTACTTTGAAAACAGTTGTTATTTATGATATGTCTAA-TTTTTAGAGTCGGTTGAAAGGACTCTATGTCTTACCAA-CAGCCTCAGGAGTGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCGAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG s panTro4.chr17 66324287 562 - 82630442 TTTTTGTCTTAGAGATATGTTCATTGATTTCTATGGTTGTATCTTTCCAGACCAAGGTAAATTTCACTGT----AATCTTCATGATAGCCAGTAtcattaagttg---taactatgttccaagcatcatattaaa--aaatacatgcattaatctaatcttcataacattcttaggatgtggatattgtt-tatttctcatttcacacataaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggagccaatactcATTTCAGAAATATCTGT-GGGAACATTATTTATCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAGAATGGATTGTAGGTACCACATTCCCAGGTATTAAGGAATGTCTATTTTATTTAGGAGCTTTTACAGTGTATTTACTTTGAAAACAGTTGTTATTTATGATATGTCTAA-TTTTTAGAGTCGGTTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCGAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24858332 565 - 73212453 TTTTTGTCTTAGAGATATGTTCATTGATTTCTATGGTTGTATCTTTCCAGACCAAGGTAAATTTCACTGT----TATCTTCATGATAGCCGGTAtcattaagttc---taactgtgttccaagcatcatatttaa--aaatacatgcattaatctaatcttcataacactcttaggatgtggatattgtt-tatttctcatttcacacataaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggagccaatactcattccagaaatatctgT-GGGAACATTATTTATCAGCCCAAAAAGCTGAAGAACTCACTGTAGTTAAAGAATGGATTGTAGGTACCACAGTCCCAGGTGTTAAGGAATGTCTAGTTTATTTAGGAGCTTTTACAGTGTATTTACTTTGAAAACAGTTGTTATTTGTGATATGTCTAATTTTTTAGAGTCGGTTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGGATTACC-TCTA------TTCAGCCCTTCTGAAATGCTCGAATCATACCCTAACGGAGATAGTGTCCATAGTTGGG i ponAbe2.chr17 C 0 I 1183 s rheMac3.chr16 53187284 563 + 80904711 TTTTTGTCTTAGAGATATGTTCATTGATTTCTATGGTTGTATATTTCCAGACCAAGGTAAATTTCACTGT----AATCTTCatgatagccagtatcattaagttc---taactatgttccaagcagcatattaaa--aaatacacgtattaatgtcatcttcataacattcttaggatgtagatactgtt-tatttctcatttcacacatgaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggagccaatactcactccagAAATATCTGT-GGGAACATTATTTGTCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAAAATGGATTGTAGGCACCACATTCCCAGATATTAAGGAATGTCTATTTTATTTAGGAACTTTTACAATGTATTTACTTTGAAAACAGTTGTTATTTGTGATATGGCTAATTTTTTAGAGTCAGCTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCAAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52752061 563 + 80997621 TTTTTGTCTTAGAGATATGTTCATTGATTTCTATGGTTGTATATTTCCAGACCAAGGTAAATTTCACTGT----AATCTTCatgatagccagtatcattaagttc---taactatgttccaagcagcatattaaa--aaatacacgtattaatgtcatcttcataacattcttaggatgtagatactgtt-tatttctcatttcacacatgaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggagccaatactcactccagAAATATCTGT-GGGAACATTATTTGTCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAAAATGGATTGTAGGCACCACATTCCCAGATATTAAGGAATGTCTATTTTATTTAGGAACTTTTACAATGTATTTACTTTGAAAACAGTTGTTATTTGTGATATGGCTAATTTTTTAGAGTCAGCTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCAAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47754901 564 + 74645514 TTTTTGTCTTAGAGATATGTTCATTGATTTCTatggttgtatatttccagacCAAGGTAAATTTCACTGT----AATCTTCATGATAGCCAGTATCATTAAGTTC---TAAGTATGTTCCaagcagcatattaaa--aaatacatgtattaatcTAATCTTCATAACATTCTTAGGATGTAGATactgtt-tatttctcatttcacaCATGAGGAACCAGATAAGTGACTGGTACCAAGGTCATGTACCTAGTAAGTGTTGGAGCCAATACTCACTCCAGAAATATCTGT-GGGAACATTATTTGTCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAGAATGGATTGTAGGTACCACATTCCCAGATATTAAggaatgtctattttatttagGAACTTTTACAATGTATTTACTTTGAAAACAGTTGTTATTTGTGATATGGCTAAGTTTTTAGAGTCAGCTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCAAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10018736 558 - 75148670 -----GTCTTAGAGATATGTTCATTGATTTCTACAGTTGTATCTTTCCAGACCAAGGTAAATTTCACTGT----AATCTTCatgatagccagtatcattaagttc---taactatgttccaagcagcatattaaa--aaatacacgtattaatctaatcttcataacattcttaggatgtagatactgtt-tatttctcatttcacacatgaggaaccagataagtgacttac-ccaaggtcatgtacctagtaagtgttggaaccaatactcactccagAAATATCTGT-GGGAACATTATTTGTCAGCCCAAAAAGCTGAAGAACTCACTGTAGCTAAAGAATGGATTGTAGGTACCACATTCCCAGATATTAAGGAATGTCTATTTTATTTAGGAACTTTTACAATGTATTTACTTTGAAAACAGTTGTTATTTGTGATATGGCTAATTTTTTAGAGTCAGCTGAAAGGACTCTATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTTCTA------TTCAG-CCTTCTGAAAATGTCAAAACATACCCTAA-GGAGATAGTGT-CATAGTTGGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112902025 560 + 159171411 TTTTTGTCTTGGAGACATGTTCATTGATTTCTATAGCTGTATCTTTCCAGACCAAGGTAAGTTTCACTGT----AATCTTCatgatagccagtatcgttaagttc---taactatgttccaagcatcatattaaa--aaatacatgtattaatctaatattcataacaatcttaggatgtagatattgtt-tgttcctcatttcacacataaggaaccagataagtgacttac-ccaaggtcatatacctagtaagtgttggagccaatactcattccagAAACATCTACAGGGAACATTATTTGTCAGCCCAAAAAGCCGAAGAACTCATTGTAGCTAAAGAATGGATTGTAGGTACCACATGTCCAGGTATTAGGGAATGTCTATTTTATTTAGGAACTTTTACAGTGTATTTACTTTGAAAACA---GTTATTTGTGATATGGCTAA-TTTTTAGAGTCAGCTGAAAGGACTCCATGTCTTACCAA-TAGCCTCAGGAATGGGAAGAATTACCTCCTG------GTCAG-CCTTCTGAAAATGTCGAAACATATCCTAA-GAAGAGAGTGT-CATAGTTGGA i calJac3.chr5 C 0 C 0 s mm10.chr11 99610734 526 + 122082543 ------CCTTGGATACACATTCGCTGATTTTCAGGGTCTTACTTTTCTGAGACAAAAGGAATTCCATTGTTTACTATTTTTAT-----TTAATATTGCTCAATGC---TATCtgtgt--caaacatcatgcttaactaaatacatgtattaatttattcttaataa-atccctacaaggtgaggattatgatatcttttggtttccctatatcagactcggtaagtgattttc-tcaatgtcaaaca-ttagtaaatgctacagccaatactcagtcccCAAATATGTGC-CATGATATTGTTCATAAGTCCAACGAGCTGCAGAATT------------------AATGACGAGGACCACATGACCAGGTCTAATGGAG----TATTTGCTTTAAGAATTTTAATGGTGTATATACTTTTATAA---TTGTTATTTGTGACA--------CCTTCAGAGTCATCTGTACACATTC--TCTCTTACCAAGTATCTCCAGGAACTAGAAGAATTGAGTCTCACATAATTTGGG-AATTCTCAAAATTCTAAAACATGCCTCCA--AACAGAGTGT-CACAATTGGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39448970 531 - 61074082 ttttgGTCTTAAATATGTGCTCATTATTTTCCATAGTTGTGGTTTTCCAAACCATGGTGAATTTCATTTTTT--AATCTTCatgatagctagtatcattgacttctaataactgtattctaaatattgtgctaaaagaaataaatgtattaatttattcttcataataatcctatgaggtaagtattg---gattcctcattttacacatgtatgac-----------tttgt-ctaaggtcatatgcctact-agtgttggagccaggactTATTGCAAAAACATCTGT-GGGAACATAATTCATAAGGCCAA------------------GTTGCTGAAGAATGGAATGTGGTTACTGTATTCCCTGGCATTAAGGAATGTCT--TTTATGTAGGAATTTTAACAGTGAATATATTTTTAAAATAGTTGGTATTCATAAAATGTCTAA-TTTTTAGAGCTATCTGAAAGGACTC--TGTCTTCCCAA-TATTCTCAACAATTCAAATAATTATCTCCCA------CAAAG-CTTTCTAAAA--TTCCAAACATATCCTAA-GGAGATAGCAT-CAAAGTTGGA i canFam3.chr9 I 839 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=140225.000000 s hg38.chr17_JH159146v1_alt 205872 56 + 278131 CATAACTGAATGATTATGGGGTATTGTGAACAAAGCCACCAATATGGTGAGGAAGT s panTro4.chr17 66324849 56 - 82630442 CATAACTGAATGATCATGGGGTATTGTGAACAAAGCCACCAATATGGTGAGGAAGT i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53187847 56 + 80904711 CATAATTGAATGATCATGGGGTATTGTGAACAAAGCCACCAAAATGGTGAGAAAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52752624 56 + 80997621 CATAATTGAATGATCATGGGGTATTGTGAACAAAGCCACCAAAATGGTGAGAAAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47755465 56 + 74645514 CATAATTGAATGATCATGGGGTATTGTGAACAAAGCCACCAAAATGGTGAGGAAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10019294 56 - 75148670 CATAATTGAATGATCATGGGGTATTGTGAACAAAGCCACCAAAATGGTGAGGAAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112902585 56 + 159171411 CATAATTGAATGATCGTGGGGTACTGTGAACAAAGCTATCAATATGGTGAGGCAGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99611260 56 + 122082543 CATAGTTAATCGGTCATGGGACACTTTGAACAAAGCCACCAAACAGGTGAGGAAGT i mm10.chr11 C 0 C 0 s canFam3.chr9 39449501 56 - 61074082 CATCACTAAAGGGTTACAGGGCACTATGAACAAAGCCATTGATgagaagaaagaat i canFam3.chr9 C 0 I 435 e ponAbe2.chr17 24858897 1183 - 73212453 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=15430.000000 s hg38.chr17_JH159146v1_alt 205928 9 + 278131 CAAACA-----AGT s panTro4.chr17 66324905 9 - 82630442 CAAACA-----AGT i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53187903 9 + 80904711 CAAACA-----AGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52752680 9 + 80997621 CAAACA-----AGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47755521 9 + 74645514 CAAACA-----AGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10019350 9 - 75148670 CAAACA-----AGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112902641 9 + 159171411 CAAAGG-----AGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99611316 14 + 122082543 CAAAGACCTTGAGC i mm10.chr11 C 0 C 0 e ponAbe2.chr17 24858897 1183 - 73212453 I e canFam3.chr9 39449557 435 - 61074082 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=609211.000000 s hg38.chr17_JH159146v1_alt 205937 288 + 278131 CTATGTAGAGGAAGGTTGCAGTCTTGCGGTATAACAAAACCCTTCAGTAGTGATCCCACTTGAACGTGTTCTCGGGCCTCATCTGGCCCATACCTCAGTGT--CTTCAACATCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAATTGTCATTTTTAATTGTTTCAAACTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACTTTTGAGTCTTTGCCTCTTAATTTACTTGGTTCTGACCTTTTCCTTTACAACTAAGACTGTTCTAttaggtt s panTro4.chr17 66324914 288 - 82630442 CTATGTAGAGGAAGGTTGCAGTCTTGCGGTATAACAAAACCCTTCAGTAGTGATCCCATTTGAACGTGTTCTCGGGCCTCATCTGGCCCATACCTCAGTGT--CTTCAACATCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAATTGTCATTTTTAATTGTTTCAAACTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACTTTTGAGTCTTTGCCTCTTAATTTACTTGGTTCTGACCTTTTCCTTTACAACTAAGACTGTTCTAttaggtt i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53187912 288 + 80904711 CTATGTAGATGAAGGCTGCAGTCTTGCAGTATAATAAAACCCTTCAGTAGTGATCCCAGTTGAATGTGTTCTCAGGCCTCATCCGGCCCATACCTCAGTGT--CTTCAACATCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAATTGTCATTTTTAATTGTTTCAAATTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACATTTTAGTCTTTGCCTCTTAATTTGCTTGGTCCTGACCTTTTCCTTTACAACTAAGTCTGTTCTAttaggtt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52752689 288 + 80997621 CTATGTAGATGAAGGCTGCAGTCTTGCAGTATAATAAAACCCTTCAGTAGTGATCCCAGTTGAATGTGTTCTCAGGCCTCATCCGGCCCATACCTCAGTGT--CTTCAACATCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAATTGTCATTTTTAATTGTTTCAAATTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACATTTTAGTCTTTGCCTCTTAATTTGCTTGGTCCTGACCTTTTCCTTTACAACTAAGTCTGTTCTAttaggtt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47755530 288 + 74645514 CTATGTAGATGAAGGCTGCAGTCTTGCAGTATAATAAAACCCTTCAGTAGTGATCCCAGTTGAATGTGTTCTCAGGCCTCATCCGGCCCATACCTCAGTGT--CTTCAACATCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAattgtcatttttaattgtttcaaatTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACATTTTAGTTTTTGCCTCTTAATTTGCTTGGTCCTGACCTTTTCCTTTACAACTAAGTCtgttctattaggtt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10019359 288 - 75148670 CCATGTAGATGAAGGCTGCAGTCTTGCAGTATAATAAAACCCTTCAGTAGTGATCCCAGTTGAATGTGTTCTCAGGCCTCATCTGGCCCATACCTCAGTGT--CTTCAACGTCTCCCTGTGTGCTATGCTGGGGCTCATTTCTGCTTATGGAACCAATTGTCATTTTTAATTGTTTCAAATTGTCATGACTTGTAGGCAAATTATGTCACTCAATCACATTTTAGTCTTTGCCTCTTAATTTGCTTGGTCCTGACCTTTTCCTTTACAACTAAGTCTGTTCTAttaggtt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112902650 288 + 159171411 CTATCTAGATGAAGGTTGCAATCTTGCAGTTTAACAAAACCCTTAGGTAGTGATCCCTGTTGAACGTGTTCCCAGGCCTCATCTGGCCCATACCCTAGTGT--CTTCAGCATCTCCCTGTGTGCTATGCTGGGGTTCATTTATGCTTATAGAACCAATTGTCATTTTTAATTGTTGCGAACTGCCATAACTTGTAGTCAAATTATGTCACTCAACCATTTTTTGGTCTTTGCCTCTTAATTTGCTGGGTTCTGACTTTCTCCTTTACAACTAAGTCTGTTTTATTAGGTT i calJac3.chr5 C 0 I 1339 s mm10.chr11 99611330 214 + 122082543 CTATCCAGAGG--GGCTTCCATCCCTGAGGAGAATAG---TCCTAGCTAG---TTTCAATACAAAGCAGTCTTCGTC--TACCTTGTCTATATCT-AGTAT--CTCCAACACCTC-------------CTCAAGTTCATTCCCACCCACAGAACCAACTGTGATGTTCAATTGCGTCAAACTCTCAGGCCTTCTGCAAAACTTAGGTCA---------------------------TGATTTTACAGCTCCTGTGTCTGTCCTTTCT----------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 39449992 266 - 61074082 CCATCTAGATGAAGGCTGCAGTCTGCCAGCACAACAGAGCTCCCAGGTAGTGATCCCCACCAAAGGTGGTCTCCAGGCCTGCTTTGCCCATACCTCTGTCTTGCTCCAGTGTCTCCCCATGCACTATGCTTGAGCATATTCCTGCTTACAGAGCCAATTGTGATTCTCAATTGTTTGGGAC----------TGTAGGAAAATCATTTCACACAGCCATTTTGTAGACTCTG------GATTTGCT-GGTTCTGACCTTTTGCTTTATAACTAAGTCTGTTCTA------- i canFam3.chr9 I 435 C 0 e ponAbe2.chr17 24858897 1183 - 73212453 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=82250.000000 s hg38.chr17_JH159146v1_alt 206225 63 + 278131 ggtgcaaaaagtaattgtggtttttggc---actttcaatggcagaagctacaattatttttgcac s panTro4.chr17 66325202 66 - 82630442 ggtgcaaaaagtaattgtggtttttggcattactttcaatggcaaaagctacaattatttttgcac i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53188200 66 + 80904711 ggtgcaaaaagtaattgtggtttttggcattactttcaatggcaaaagctgcaattacttttgcac i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52752977 66 + 80997621 ggtgcaaaaagtaattgtggtttttggcattactttcaatggcaaaagctgcaattacttttgcac i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47755818 66 + 74645514 ggtgcaaaaaggAATTGTGGTTTTTGGCATTACTTTCAACGGCAaaagctgcaattacttttgcac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10019647 66 - 75148670 ggtgcaaaaagtaattgcggtttttggcattactttcaatggcaaaagctgcaattacttttgcac i chlSab2.chr16 C 0 C 0 s mm10.chr11 99611544 18 + 122082543 ------------------------------------------------CTGCAATTATTTCTGCCT i mm10.chr11 C 0 C 0 e ponAbe2.chr17 24858897 1183 - 73212453 I e canFam3.chr9 39450258 0 - 61074082 C e calJac3.chr5 112902938 1339 + 159171411 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=162537.000000 s hg38.chr17_JH159146v1_alt 206288 76 + 278131 cagcctaaTAGATCTGAAGTTGAAGGTTCAAGTGTAAGCATTCTTATTGATCACACCACTTGCATGGTTTCTTATA s panTro4.chr17 66325268 76 - 82630442 cagcctaaTAGATCTGAAGTTGAAGGTTCAAGTGTAAGCCTTCTTATTGATCACACCACTTGCATGGTTTCTTATA i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53188266 76 + 80904711 caatctaaTAGATCTGAAGTTGAAGGTTCAAGTGTAGGCCTTCTTATTGATCACACTTCTTGCATGGTTTCTTACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52753043 76 + 80997621 caatctaaTAGATCTGAAGTTGAAGGTTCAAGTGTAGGCCTTCTTATTGATCACACTTCTTGCATGGTTTCTTACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47755884 76 + 74645514 caatctaatagatCTGAAGTTGAAGGTTCAAGTGTAGGCCTTCTTATTGATCACACTTCTTGCATGGTTTCTTACA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10019713 76 - 75148670 caatctaaTAGATCTGAAGTTGAAGGTTCAAGTGTAGACGTTCTTATTGATCACACTTCTTGCATGGTTTCTTACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112904277 75 + 159171411 CAACCTAATAGATCTGAACTTGAA-GTTCAAGTGTAAGCCTTCTTATTGATCCCACTTCTTTCATTGTTCCTTACA i calJac3.chr5 I 1339 C 0 s mm10.chr11 99611562 68 + 122082543 --------TAGATCTGTGGTTGAAGGCTCTGGTTTACCCCTTGCCATCCGTCCTGCTGCTTATACAGTTCCTTACA i mm10.chr11 C 0 C 0 s canFam3.chr9 39450258 66 - 61074082 ----------GATCTGTGGCTGAGGACTGTGGTGTCAGCCTCCTTTCTGATCATTCTGCTTGCATAGCCTCTGGCA i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24858897 1183 - 73212453 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=345526.000000 s hg38.chr17_JH159146v1_alt 206364 121 + 278131 GGCTTACCCAGATCTGCACCAGCCACTTCAGCCAACCAGAGAATGGGGTGACTGTGGGAATAAATGAGATCCAATAATAATGATAGGTTTGAGGGGAAACAAGGCATTGTCCATTTGAGAA s panTro4.chr17 66325344 121 - 82630442 GGCTTACCCAGATCTGCACCAGCCACTTCAGCCAACCAGAGAATGGGGTGACTGTGGGAATAAATGAGATCCAATAATAATGATAGGTTTGAGGGGAAACAAGGCATTGTCCATTTGAGAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24860080 121 - 73212453 GGCTTACCTAGATCTGCACCAGCCACTTCGGCCAACCAGAGAATGGGGTGACTGTGGGAATAAATGAGATCCAATAATAATGATAGGTTTGGGGGAAAACAAGGCGTTGTCCATTTGAGAA i ponAbe2.chr17 I 1183 C 0 s rheMac3.chr16 53188342 121 + 80904711 GGCTTACCCAGATCTGCACCAGTCAGTTTGGCCAACCAGAGAATGGGGTGACTGTGGAAATAAATGAGATTCAATAATAGCGATAACTTTAGGGGGAAACAAGGCATTCTCCATTTGAGAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52753119 121 + 80997621 GGCTTACCCAGATCTGCACCAGTCAGTTTGGCCAACCAGAGAATGGGGTGACTGTGGAAATAAATGAGATTCAATAATAGCGATAACTTTAGGGGGAAACAAGGCATTCTCCATTTGAGAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47755960 121 + 74645514 GGCTTACCCAGATCTGCACCAGCCACTTTGGCCAACCAGAGAATGGGGTGACTGTGGAAATAAACGAGATTCAATAATAGCGATAACTTTAGGGGGAAACAAGGCATTCTCCATTtgagaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10019789 121 - 75148670 GGCTTACCCAGATCTGCACCAGCCACTTTGGCCAACCAGAGAATGGGGTGACTATGGAAATAAACGAGATTCAATAATAGCGATAACTTTCGGGGGAAACAAGGCATTCTCCATTTGAGAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112904352 121 + 159171411 GGCTTACCCAGATCTGCACCAACCACTCTAGCCAACCAGAGGATAGGGTAACTGTGGAAATAAACGAGATCCAATAATAATGATAGGTTTGGTAGGAAACAAGGCATTCTCCATTTGAGAA i calJac3.chr5 C 0 I 174 s mm10.chr11 99611630 117 + 122082543 GGGTCACTCAGCATGCTAGCAGCCAGTGTAGTTGACACAGGCACAGGGTTACCACAGAGACAAATGAA---TGATAATAAAGATAG-TGTGGAAGACAACACAACATCTTCTGTCTGAGAA i mm10.chr11 C 0 C 0 s canFam3.chr9 39450324 121 - 61074082 GGTTTACTCAGAATCACACCAACCACTGTTGCTCACCATGGCATGGATTTACTGTGGAAACAAACACAATCCAAAAATAACAATGAGCTTGGGAGTACACAAAGAATTCTACATCTGAGAA i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=269614.000000 s hg38.chr17_JH159146v1_alt 206485 93 + 278131 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAACAA-GAAAAACTCTGAGAGGAGAAAAACAGATGTACTTAACG-AAT-TTTGAAAACAGTGA s panTro4.chr17 66325465 93 - 82630442 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAACAA-GAAAAACTCTGAGAGGAGAAAAACAGATGCACTTAACT-AAT-TTTGAAAACAGTGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24860201 94 - 73212453 AACACTTTTAAATAAGGAG---GTCTCTAGAATGCTAACAA-GAAAAACTCTGAGAGGAGAAAAACAGGTGTACTTAACGAAAT-TTTGAGAACAGTGA i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53188463 93 + 80904711 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAAAAA-GAAAAACTCTGAGAGGAGAAAAACAGATGTACTTAGCA-AAT-TTTGAAAACACTGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52753240 93 + 80997621 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAAAAA-GAAAAACTCTGAGAGGAGAAAAACAGATGTACTTAGCA-AAT-TTTGAAAACACTGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47756081 93 + 74645514 aacacttttaaataaggaG---GTCTCTAGAAggctaaaaa-gaaaaactctgagAGGAGAAAAACAGATGTACTTAGCA-AAT-TTTGAAAACACTGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10019910 93 - 75148670 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAAAAA-GAAAAGCTCCGAGAGGAGAAAAACAGATGTACTTAGCA-AAT-TTTGAAAACACTGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112904647 93 + 159171411 AACACTTTTAAATAAGGAG---GTCTCTAGAAGGCTAACAA-GAAAAACTCTGAGAGGAGAAAAACAGATGTACTTAGCA-AAT-TTCAGAAACAGTGA i calJac3.chr5 I 174 C 0 s mm10.chr11 99611747 97 + 122082543 AGCACAGCAAGATAAAGAGAAAGTTTCTATATGTCTAAGAC-TAAAAGTACTGAGGGGAATAAAGCAGAGGTGTTTAGAG-ATTATTTTAAAATGGTGA i mm10.chr11 C 0 I 1514 s canFam3.chr9 39450445 88 - 61074082 --AATATTAAGACAAGGAA---TTCCCTAGAAGGCTAACAAGGAAAAATCCTGAGAGGAGAAAA----CTGTAGTTAGAG-AAA-TTTTAAAATGGTGT i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=6876.000000 s hg38.chr17_JH159146v1_alt 206578 2 + 278131 TC s panTro4.chr17 66325558 2 - 82630442 TC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24860295 2 - 73212453 TC i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53188556 2 + 80904711 TC i rheMac3.chr16 C 0 I 310 s macFas5.chr16 52753333 2 + 80997621 TC i macFas5.chr16 C 0 I 310 s papAnu2.chr16 47756174 2 + 74645514 TC i papAnu2.chr16 C 0 I 326 s chlSab2.chr16 10020003 2 - 75148670 TC i chlSab2.chr16 C 0 I 326 s calJac3.chr5 112904740 2 + 159171411 TC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39450533 2 - 61074082 TC i canFam3.chr9 C 0 C 0 e mm10.chr11 99611844 1514 + 122082543 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=1010823.000000 s hg38.chr17_JH159146v1_alt 206580 383 + 278131 AAGAATATATAGAAAGAAATTAGACTTGTGAGCCTATCCATTGGTTAATTACCAAACCGTTAAAAAAGATAAAACTCCATTGTGCACGTACTGCAAATGTAAAGTTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-TTGGTTTATTG-TTTTATTTTAAGAATATGCATATCCAGC---ATGAGTTGAGAGTTGGGATGGAATGATAATGTCTTTCTCTGTTTTAACCAATCCCCTTAGAACTTACTCatt-tatcattca----------acacatcatttctgattatactcaatgtgccaaatatcgtgcagatcagtg--ggaatctagtagtgaacaaagttagtcgagatcctgg s panTro4.chr17 66325560 383 - 82630442 AAGAATATATAGAAAGAAATTAGACTTGTGAGCCTATCCATTGGTTAATTACCAAACCGTTAAAAAAGATAAAACTCCATTGTGCACGTACTGCAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-TTGGTTTATTG-TTTTATTTTAAGAATATGTATATCCAGC---ATGAGTTGAGAGTTGGGATGGAATGATAATGTCTTTCTCTGTTTTAACCAATCCCCTTAGAACTTACTCatt-tatcattca----------acacatcatttctgattatactcaatgtgccaaatattgtgcagatcagtg--ggaatctagtagtgaacaaagttagttgagatcctgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24860297 393 - 73212453 AAGAATATATAGAAAGAAATTAGACTTGTGAGCCTATCCATTGGTTAATTACCAAATTGTTAACAAAGATAAAACTCCATTGTGCACGTACTAAAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTATCATATTTCCAGAAAAAACATCTTTCTTCATG-A-TTGGTTTATTG-TTTTATTTTAAGAATATGCATATCCAGC---ATGAGTTGAGAGTTGGGATGGAATGATGATGTCTTTCTCTCTTCTAACCAATCCCCTTAGAACTTACTCATT-TATCATTCAACACAtcattacacatcatttctgattatactcaatgtgccaaatattgtgcagatcagtg--ggaatctagtagtgaacaaagttagttgagatcctgg i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53188868 381 + 80904711 aagaaTATATAGAAAGAAATTAGACTTATGAGCCTATCCATTGGTTAATTACCAAACGGTTAACAAAGATAAAACTCCATTGTGCACATACTGAAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-TTGGTTTATTG------TTTTAAGAATATGCACATCCAGCATGATGAGTTGAGAGTTGGGATGGAATGATGATGTTTTTCTCTCTTCTAACCAATCCCCTTAGAACTTATTCatt-catcattca----------acacatcattttttattatactcaatgtgccaaatattgtgcaggtcagtg--ggaatctagtagtgaacaaagttagtcaagatcctgg i rheMac3.chr16 I 310 C 0 s macFas5.chr16 52753645 381 + 80997621 aagaaTATATAGAAAGAAATTAGACTTATGAGCCTATCCATTGGTTAATTACCAAACGGTTAACAAAGATAAAACTCCATTGTGCACATACTGAAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-TTGGTTTATTG------TTTTAAGAATATGCACATCCAGCATGATGAGTTGAGAGTTGGGATGGAATGATGATGTTTTTCTCTCTTCTAACCAATCCCCTTAGAACTTATTCatt-catcattca----------acacatcattttttattatactcaatgtgccaaatattgtgcaggtcagtg--ggaatctagtagtgaacaaagttagtcaagatcctgg i macFas5.chr16 I 310 C 0 s papAnu2.chr16 47756502 386 + 74645514 aagaatatatagaaagaaattaGACTTACGAGCCTATCCATTGGTTAATTACCAAACGGTTAACAAAGATAAAACTCCATTGTGCACATACTGAAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-Ttggtttattg-ttttattttaagaatatgcaCATCCAGCATGATGAGTTGAGAGTTGGGATGGAATGAtgatgtttttctctcttctaacCAATCCCCTTAGaacttattcatt-catcattca----------acacatcattttttattatactcaATGTGCCAAATATTGTGCAGGTCAGTG--GGAATCTAGTAGTGAACAAAGTTAGTCAAGATCCTGG i papAnu2.chr16 I 326 C 0 s chlSab2.chr16 10020331 386 - 75148670 aagaaTATATAGAAAGAAATTAGACTTACGAGCCTATCCATTGGTTAATTACCAAACGGTTAACAAAGATAAAACTCCATTGTACACATACTGAAAATGTAAAGGTTTTGAATATAACAGTCTTCTTGTTGAGAAACTTTTACCATATTTCCAGAAAAAAGATCTTTCTTCATG-A-TTGGTTTATTG-TTTTATTTTAAGAATATGCACATCCAGCATGATGAGTTGAGAGTTGGGATGGAATGATGATGTTTTTCTCTCTTCTAACCAATGCCCTTAGAACTTATTCatt-catcattca----------acacatcatttttgattatactcagtgtgccaaatattgtgcaggtcagtg--ggaatctagtagtgaacaaagttagtcatgatcctgg i chlSab2.chr16 I 326 C 0 s calJac3.chr5 112904742 382 + 159171411 AAGAATATATAGAAAGAAATCAGACTTGTGAGCCTATTCATTGGTTAATTACCAAATCGTTAACAAAAATAAAACTGCATTATACACATACTAAAAATGTAAAGATTTTGAATATAATA---CTCTTGTTGAGAAAGTTTTACCGTATTTTCAGAAAAAATATCCTTCTTCATGAA-TCAGCTTATTG-TTTTATTTTAAGAATATGCACATCCAGC---ATAAGTTGACAGTTGGGATGGAATGATGATGTCTTTCTCTCTTCTAACCAGTCCCCCTAGAAC-TATTCatt-catcattca----------acacatcatttctcattatactcaatatgccaaatattgtgcaggtcactactggaatctagtagtgaacaaagtcagtcaagatcctgg i calJac3.chr5 C 0 C 0 s canFam3.chr9 39450535 363 - 61074082 -AAAATATGTAGAAAGAAACTGGACTTGTCATCCTGTCTA-CAGTAAACCATTAAACTCTTACTAAAGAGAAAACTCCATTGTGT-----------ATGTAAATGTTTTGATTCTAATGGACTTCCTGTTGAGAAGTTTTTACCATATTTCAAGAAAAATGCT-TTCCATCGTG-AGGTGGCTAATTTATTTTATTGTAAGAATGCACATATCCAGC---ATGAGGAGAGAATCAGTGAGGGATAAAGATGTTTCTCTCTCCTCCAAT-----GCTGTAGAACTTATTCattccctcattca----------ccaaa----ttctgattatatcctatgtgccaaatatggtgcagatcagta--ggagtccagcagtgaacaaagtcaatcaagttccaac i canFam3.chr9 C 0 C 0 e mm10.chr11 99611844 1514 + 122082543 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=2205446.000000 s hg38.chr17_JH159146v1_alt 206963 965 + 278131 ccctcaatgtaaattagctcagccattgtggaaagcagtttggcaatttctgaaagtatttaaaacagaattaccattcaacccagcaatcccattagtgggtatggacccagagggattgaaatcattctaccataaagacatatacatgcatatgtttattgcagcactgttcaaagtagcaaagatatggaatcaacctaaatacccatcaagggtggactggataaagaaaatgtggtacacatacaccatggaatactatacagccat-aaaaaaggaaattatgtcctttgtagcaatgtggatgaagctggaggccattatcctaagcaaactaacacagatacagaaaaccaaatacggcatgttctcacttataagtggtagctaaacattgagtacatatggacacaaataagggaacaacagatactgaagcttacttgagggcagatggtgggaagagggtgaggataaaaaaaccatctatctgttactatgcttttgtttaattaaattaattaattaattaagttttgagacagagtctcactctgtcacccaggcaggagtgcagtggcgcaaccttgtctcaccaaagcctctgcctcccaggttcaagcgattctcctgattcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctactttttgtatttttagtagagacagggtttcaccatgttggcca-ggatggtcttgaattcctggcctcaagtgacctacccatctcagcctcccaaagtgctgggatttcaggcttgagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacaaacgtgcacatgtacccctgaacttgaaataaatttaaattaaaaaGACTAAAGACCCCTG s panTro4.chr17 66325943 965 - 82630442 ccctcaatgtaaattagctcagtcattgtggaaagcagtttggcgatttctgaaagtatttaaaacagaattaccattcaacccagcaatcccattattgggtatggacccagagggatagaaatcattctaccataaagacatatacatgcatatgtttattgcagcactgttcaaagtagcaaagatatggaatcaacctaaatacccatcaagggtggactggataaagaaaatgtggtacacatacaccatggaatactatacagccat-aaaaaaggaaattatgtcctttgtagcaatgtggatgaagctggaggccattatcctaagcaaactaacacagatacagaaaaccaaatacggcatgttctcacttataagtggtagctaaacattgagtacatatggacacaaataagggaacaacagatactgaagcttacttgagggcagatggtgggaagagggtgaggataaaaaaaccatctatctgttactatgcttttgtttaattaaattaattaattaattaatttttgagacagagtctcactctgtcacccaggcaggagtgcagtggcgcaaccttgtctcaccaaagcctctgcctcccaggttcaagcgattctcctgattcagcctcctgagtagcttggattacaggcacatgccaccatgtccagctactttttgtatttttagtagagacagggtttcaccatgttggcca-ggatggtcttgaattcctggcctcaagtgacctacccatctcagcctcccaaagtgctgggatttcaggcttgagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacaaacgtgcacatgtacccctgaacttgaaataaatttaaattaaaaaGACTAAAGACCCCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24860690 962 - 73212453 ccctcaatgtaaattagctcagccattgtggaaagcagtttggcaatttctgaaagtatttaaaacagaattaccattcaacccagcaatctcattattgggtatggacccagagggatagaaatcattctaccatgaagacatatacatgcatatgtttattgcagcactgttcaaagtagcaaagatgtggaatcaacctaaatacccatcaagggtggactggataaagaaaatgtggtacacatacaccatggaatactatacagccgt-aaaaaaggaaattatgtcctttgtagcaacgtggatgaagctggaggccattatcctaagcaaactaacacagatacagaaaaccaaatatggcatgttctcacttataagtggtagctaaacattgagtacatatggacacaaataagggaacaacagatactgaagcctacttgagggcagatggtgggaagagggtgaggat-aaaaaaccaccta--tgttactatgcttttgtttaattaaattaattaattaattagtttttgagacagagtctcactctgtcacccaggcaggagtgcagtggcgcaatcttgtctcagcaaagcctctgcctcccaggttcaagcgattctcctgattcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctaatttttgtatttttagtagagacagggttttgccatgttggcca-ggctggtcttgaattcctggcctcaagtgatctacccatctcagcctcccaaagtgctgggattacaggcctgagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacaaacctgcacatgtacccctgaaattgaaacaaaTTTAAATTAAGAAGACTAAAGACCCCTG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53189249 952 + 80904711 ccctcaatgtaaattagctcagccattgtggcaagcagtttggcaatttctgaaagtatttaaaacagaattgccatccaacccagcaatcccattattgggtatggacccagaggaatagaagtcattctaccataaagaca-atacatgcatacgt-----------ctggtcaaggtagcaaaaatatggaatcaacctaaatacccattaagggtggacaggataaagaaaatatggtacacatacatcacagaatagtacacagccataaaaaaaggaaattatgtcctttgtaacaatgtggatgaagctggaggccattatcctaagcgaactaacgcagatacagaaaaccaaataccacatgttctcacttataagtggtatctaaagattgaatacatatggacacaaagaagggaacaacagatactgaggcctacttgaaggcggatggcgggaagagggtgaggatgaaaaaaccacctgtctgttactatgcttttgtttaatttaattaattaattaatt---ttttgaaacggagtctcactctgtcacccaggcaggagtgcagtggtgcaatcttggctcaccgaagcctctgcctcccaggttcaagtgattctcctgactcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctaatttttgtatatttagtagagacagggtttcgccatgttggccatgaatggtcttgaattcctggcctcaagtgacctacccaccttagcctcccaaagtgccgggattacaggcataagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacacacctgcacatgtatccctgaacttaaaataaatttaaatttaaaaaaaTGAAGACCTCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52754026 952 + 80997621 ccctcaatgtaaattagctcagccattgtggcaagcagtttggcaatttctgaaagtatttaaaacagaattgccatccaacccagcaatcccattattgggtatggacccagaggaatagaagtcattctaccataaagaca-atacatgcatacgt-----------ctggtcaaagtagcaaaaatatggaatcaacctaaatacccattaagggtggacaggataaagaaaatatggtacacatacatcacagaatagtacacagccataaaaaaaggaaattatgtcctttgtaacaatgtggatgaagctggaggccattatcctaagcgaactaacgcagatacagaaaaccaaataccacatgttctcacttataagtggtatctaaacattgaatacatatggacacaaagaagggaacaacagatactgaggcctacttgaaggcggatggcgggaagagggtgaggatgaaaaaaccacctgtctgttactatgcttttgtttaatttaattaattaattaatt---ttttgaaacggagtctcactctgtcacccaggcaggagtgcagtggtgcaatcttggctcaccgaagcctctgcctcccaggttcaagtgattctcctgactcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctaatttttgtatatttagtagagacagggtttcgccatgttggccatgaatggtcttgaattcctggcctcaagtgacctacccaccttagcctcccaaagtgccgggattacaggcataagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacacacctgcacatgtatccctgaacttaaaataaatttaaatttaaaaaaaTGAAGACCTCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47756888 951 + 74645514 CCCtcaatgtaaattagctcagccatTGTGgcaagcagtttggcaatttctgaaagtatttaaaacagaattgccatccaacccagcaatcccattattgggtatggACCCAGAGGAATAGaagtcattctaccataaagaca-atACATGCATACGT-----------CTGTTCAAAgtagcaaaaatatggaatcaacctaaatacccattaagggtggactggataaagaaaatatggtacacataCATCACAGAATagtacacagccataaaaaaaggaaattatgtcctttgtaacaatgtggatgaagctggaggccattatcctaagcgaactaacgcagatacagaaaaccaaataccacatgttctcacttataagtggtatctaaacattgaatacatatggacacaaagaagggaacaacagatactgagGCCTACTTGAGGGCGGATGGTGGGAATAGGGTGAGGATGAAAAAACCACCTGTCTGTTACTAtgcttttgtttaatttaattaattaattaatt---ttttgaaacggagtctcactctgtcacccaggcaggagtgcagtggtgcaatcttggctcaccgaagcctctgcctcccaggttcaagtgattctcctgactcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctaatttttgtatatttagtagagacagggtttcgccatgttggcca-ggctggtcttgaattcctggcctcaggtgacctacccacctcagcctcccaaagtgctgggattacaggcataagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacaaacctgcacatgtatccctgaacttaaaataaatttaaatttaaaaaaatgaagacctCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10020717 950 - 75148670 ccctcaatgtaaattagctcagccattgtggcaagcagtttggcaa-ttctaaaagtatttaaaacagaattggcatccaacccagcaattccattattgggtatggacccagaggaatagaagtcattctaccataaagaca-atacatgcatacat-----------ctgttcaaagtagcaaaaatatggaatcaacctaaatacccattaagggtggactggataaagaaaatatggtacacatacatcacagaatagtacacagccattaaaaaaggaagttatgtcctttgtaacaatgtggatgaagctggaggccattatcctaagccaactaatgcagatacagaaaaccaaataccacatgttttcacttataagtggtatctaaacattgaatacatatggacacaaagaagggaacaacagatactgaggcctacttgagggcggatggtgggaagagggtgaggatgaaaacaccacctgtctgttactatgcttttgtttaatttaattaattaattaatt---ttttgagatggagtctcactctgtcacccaggcaggagtgcggtggtgcaatcttggctcaccggagcctctgcctcccagattcaagtgattctcctgactcagcctcctgagtagcttggattacaggcgcatgccaccatgcccagctaatttttgtatatttagtagagacagggtttcgccatgttggcca-ggctggtcttgaattcctggcctcaagtgacctacccacctcagcctcccaaagtgctgggattacaggcatgagccactgcacctggccatctgttactatgcttattacctgggtgatgaaataatctgtataccaaaaccctgtgacacacaatttacctatataacaaacctgcacatgtacccctgaacttaaaataaatttaaatttaaaaaGATGAAGACCTCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112905124 946 + 159171411 ccctcaGtgcaagttagctcagccactgtggaaagcagtttggcaatttctgaaagtatttaaaatagaattaccattcgacccagcaatcccattaatgggtatggacccagaggaatagaaatcattcttccataaagacacatacatgcatatgttcattgcagcactattcacaatagcaaagatatgtgatcaacctaaatacccatcaagggtggaatggataaagaaaatgtggtacatatacattacagaatactacacagccat-taaaaaggatattatgtcatttgtagcaacgtggatgaagctggaggccattatcctaagcgaactaacacagatacagaaaactaaatactgcatgttctcacttataagtggtagctaaatactgagtatgtatggactcaaagaaggcaacaacagatactggggcctacttgagggcggatggtgggaggaggatgaggatcaaaaaaccacc----tgttactatgc-----tttaattaaattaattaat--------gtttgagacagaatttcactctgtcacccaggctggagtgcaatggtgcaatctcagcttactgaagcctctgcctcctgggtttaagtgattctcctgcttcagcctcatgagtagcttggattacaggtatgtgccactatgcccagctaatatttgtatttttagtagagatagggttttgccattttggcca-ggctggtcttgaattcctgacctcaagtgatccacccacctcagcttcccaaagtgctgggattacagccatgagccactgcacctggccatctgttactatgcttattacttaggtgatgaaataatttgtatacctaaaccttgtgacgcacaatttacctatataataaac-tgcacatgtactcctggacttaaaataaa-ttaaaataaaaaaaaTAAAGATCCCTG i calJac3.chr5 C 0 C 0 e canFam3.chr9 39450898 0 - 61074082 C e mm10.chr11 99611844 1514 + 122082543 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=355161.000000 s hg38.chr17_JH159146v1_alt 207928 135 + 278131 CCCTCACAAAGCTTCCCTTGCCTCACTTCTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCTGAACAATC--AAAGAAATCTCTTTTCTATCACATGCTAGGAA---------------CTAAAAAGATATTTATCAGGAAAATGAT s panTro4.chr17 66326908 135 - 82630442 CCCTCACAAAGCTTCCCTTGCTTCACTTCTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCTGAACAATC--AAAGAAACCTCTTTTCTATCACATGCTAGGAA---------------CTAAAAAGATATTTATCAGGAAAATGAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24861652 135 - 73212453 CCCTCACAAAGCTTCCCTTGCCTCACTTCTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCTGAACAATC--AAAGAAACCTCTTTTCTATCACATGCTAGGAA---------------CTAAAAAGATATTTATCAGGGAAATGAT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53190201 150 + 80904711 CCCTCACAAAGCTTCCCTTGCCTCACTTTTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCCGAACAATC--AAAGAAACCTCTTTTCTATCAGATGCTAGGAACTTTTCTATCAGATGCTAAAAACATATTTCTCAGCGAAATGAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52754978 135 + 80997621 CCCTCACAAAGCTTCCCTTGCCTCACTTTTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCCGAACAATC--AAAGAAACCTCTTTTCTATCAGATGCTAGGAA---------------CTAAAAACATATTTCTCAGCGAAATGAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47757839 135 + 74645514 CCCTCACAAAGCTTCCCTTGCCTCACTTTTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCCGAACAATc--aaagaaacctcttttctaTCAGATGCTAGGAA---------------CTAAAAACATATTTCTCAGTAAAATGAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10021667 135 - 75148670 CCCTCACAAAGCTTCCCTTGCCTCACTTTTCTCAATGGGCAGGTAGATATGCCCAGGAATACATGCCGAACAATG--AAAGAAACCTCTTTTCTATCAGATGCTAGGAA---------------CTAAAAACATGTATCTCAGCGAAATGAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112906070 137 + 159171411 CCCTCACAAAGCTTACCTTGCCTCCCTTCTCTCAGCGGGCAGATAGATAAGCCCAGGAAGACATGCTGAACAGTCCAAAAAAAGCCTCTTTTATATCAGATGCTAGGTA---------------CTAAAAACATATTTCTCAGGGAAATGAT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39450898 132 - 61074082 ccttcacaaagcttacCTGGCCTGCCTCCTCTCTCTGGGTAGGTAGAT--GCCCAAGCAGACAAGCAGCACATTC--CAAAAAA-CTCTTTTAGAGCATATGTTGGGAA---------------CTCAATGCATATTTCTCAGGAAAACAAT i canFam3.chr9 C 0 C 0 e mm10.chr11 99611844 1514 + 122082543 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=221635.000000 s hg38.chr17_JH159146v1_alt 208063 78 + 278131 AGTGGTTAGCCTTCCTTACCAACATACAAGTATTTAACAAAATCAAAAATATATGCAGTATGGATTAATGTTATCAGC s panTro4.chr17 66327043 78 - 82630442 AGTGGTTAGCCTTCCTTACCAACATACAAGTATTTAACAAAATCAAAAATATATGCAGTATGGATTAATGTTATCAGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24861787 78 - 73212453 AGTTGTTAGCCTTCCTTACCAACATACAAGTATTTAACAATATCAAAAATATATGCAATATGGATTAATGTTATCAGC i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53190351 78 + 80904711 AGTGGTTAGCCTTCCTTACCAACCTACAAGTATTTAACAATATCAACAATATATGCAGTATGGATTAATGTTATCAGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52755113 78 + 80997621 AGTGGTTAGCCTTCCTTACCAACCTACAAGTATTTAACAATATCAACAATATATGCAGTATGGATTAATGTTATCAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47757974 78 + 74645514 AGTGGTTAGCCTTCCTTACCAACCTACAAGTATTTAACAATATCAACAATATATGCAGTATGGATTAATGTTATCAGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10021802 78 - 75148670 AGTGGTTAGCCTTCCTTACCAACCTACAAGTATTTAACAGTATCAACAATATATGCAGTATGGATTAATGTTATCACC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112906207 78 + 159171411 AGTGGTTAGCCTTCCTTACCAACTTACATGTGTTTAACCATATCAAAAATATACCCAGTATGGATTAATGTTATCACC i calJac3.chr5 C 0 C 0 s mm10.chr11 99613358 71 + 122082543 AGTGGTTAGCCTTCCTGACTGGTTTA------TCTGACAACAGTGAAACTGC-CCCACAAAGGGTTAATGTAATCACC i mm10.chr11 I 1514 I 70 s canFam3.chr9 39451030 76 - 61074082 AGTAGTTAG-TTTCCTAGTCAGCTTAAAAATGTTTAACAACCACAAAATCATATCCAGTGTGGATTAGTGTT-TTACT i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=150229.000000 s hg38.chr17_JH159146v1_alt 208141 61 + 278131 ATTTCAACCGCATTGCAGTTGTTTAAATGGTTAAG----ATGT--ATGCGGAGCTCAAAACTAGGAT s panTro4.chr17 66327121 60 - 82630442 ATTTCAACCGCATTGCAGTTGTTTAAATGGT-AAG----ATGT--ATGCGGAGCTCAAAACTAGGAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24861865 60 - 73212453 ATTTCAACCGCATTGCAGTTGTTTAAATGGT-AAG----ATGT--ATGCAGAGCTCAAAACTAGGAT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53190429 60 + 80904711 ATTTCAACTGCATTGGTGTTGTTTAAATGGT-AAG----ATGA--ATGTGGAGCTCAAAACCAGGAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52755191 60 + 80997621 ATTTCAACTGCATTGGTGTTGTTTAAATGGT-AAG----ATGA--ATGTGGAGCTCAAAACCAGGAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47758052 60 + 74645514 ATTTCAACTGCATTGGTGTTGTTTAAATGGT-AAG----ATGA--ATGTGGAGCTCAAAACCAGGAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10021880 60 - 75148670 ATTTCAACTGCATTGGTGTTGTTTAAATGCT-AAG----ATGA--ATGTGGAGCTCAAAACCAGGAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112906285 64 + 159171411 ATTTCAACCGCATTGGCATTGTTTAAATGGT-AAGATGTATGT--ATGTGGAGCTCAAAACTAGGAT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39451106 61 - 61074082 ATTTCAAC-ATATTGGCATTGTTTTAATGGT-AAA----ATAATCATTTGGGGTTCTAAATTAGAAT i canFam3.chr9 C 0 C 0 e mm10.chr11 99613429 70 + 122082543 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=2554190.000000 s hg38.chr17_JH159146v1_alt 208202 952 + 278131 GATTACAACCAAGGCTTCATTTCTCCCTGTCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCATGGTGGTGCTGACGG-GAACCATGGAGAAGATGGGATAGTGGTTCCTCCAGCATAGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCTTGTTTGACATCAATTACCGTACAGTTTCCTACATTGGTGAACAAATAGGGCTATAACTTAGCTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCGTCAGCATCACCA-TAAAACCTGCGACTCGAAATATGAAGGTGAATCAT--GAGATG-ATCAGATTTA-TTTGAAATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCTCTCCTTTCGTTCTTCTGGTTCTGCATGCTGTAATGTAAGCTAAATATGAGCTTTTGAAGAGCAATAAACAATAAATAAAAAGAAATGT--TTGCTTCCCCAGAAATATAATTTTATTTT-----TTTTTACAGTGCAAAAATACAGCATACAAATAGTATTATCCTGGAAG-AAAAAAATCTCATCTGAGAACCTTGAAAC--AGTAGAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTTTATTTACTCG-TTTTTT--------------------------------TTTT-CAAGCCAGGAATTCGAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTGCATAATTATGTGGGGAAATAGATAGGATGTTATTGTTGAATTCGTGCTTGAGGATCAGCTAGGCTGCAAAGGTGGAGTCTCTCATCTGATCCAGAAGGGGTAGAA-GAGTCTGCACAAGCTTCTGTGCACCTGGGAATGTTTCGTGCGTTGAGAGGAGAGG s panTro4.chr17 66327181 955 - 82630442 GATTACAACCAAGGCTTCATTTCTCCCTGTCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCGTGGTGGTGCTGACGG-GAACCATGGAGAAGATGGGATAGTGGTTCCTCCAGCATAGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCCTGTTTGACATCAATTACCGTACAGTTTCCTACATTGGTGAACAAATAGGGCTATAACTTAACTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCGTCAGCATCACCA-TAAAACCTGCAACTTGAAATATGAAGGTGAATCAC--AAGATG-ATCAGATTTA-TTTGAAATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCTCTCCTTTCGTTCTTCTGATTCTGCATGCTGTAGTGTAAGCTAAATATGAGCTTTTGAAGAGCAATAAACAATAAATAAAAAGAAATGTGTTTGCTTCCCCAGAAATATAATTTTATTTC-----TTTTTACAGTGCAAAAATACAGCATACAAGTAGTATTATCCTGGAAG-AAAAAAATCTCATCTGAGAACCTTGAAAC--AGTAGAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTTTATTTACTCG-TTTTTT--------------------------------TTTTTCAAGCCAGGAATTCGAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTGCATAATTATGTGGGGAAATAGATAGGACGTTATTGTTGAATTCGTGCTTGAGGATCAGCTAGGCTGCAAAGGCGGAGTCTCTCATCTGATCCAGAAGGGGTAGAA-GAGTCTGCACAAGCTTCTGTGCACCTGGGAATGTTTCGTGCCTTGAGGGGAGAGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24861925 955 - 73212453 GATTACAACCAAGGCTTCATTTCTCCCTGTTTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCGTGGTGGTGCTGATGG-GAACCATGGAGAAGATGGGATAGTGGTTCTTCCAGCACAGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCCTGTTTGACATCAATTACCGTACAGTTTTCTACACTGGTGAACAAATAGGGCTATAACTTAACTTAGACTTCCTCTCCCTTATCATGTGTGTGAATTATTCATAAGTCAATTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCCTCAGCATCACCA-TAAAACCTGCGACTCGAAATATGAAGGTGAATCAC--ATGAGATATCAGATTTA-TTTGAAATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCCCTCCTTTCGTTCTTCTGATTCTGCATGCTGTAATGTAAGCTAAATATGAGCTTTTGAAGAGCAATAAACAATAAATAAAAAGAAATGTGTTTGCTTCCCCAGaaatataattttatttt-----tttttaCAGTGCAAAAATACAGCATACAAGTAGTATTATCCTGGAAG-AAAAAAATCTCATCTGAGAACCTTGAAAT--AGTAGAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTTTATTTACTCG-TTTTTT--------------------------------TTTT-CAAGCCAGGAATTTAAATGATGAAAGCTGGAATTTTTCTCGAGATTGTCAGAGAGGGCCAGGATTAGCTGCATAATTATGTGGGGAAATAGATAGGATGTTATTGTTGAATTTGTGCTTGAGGATGAGCTAGGCTGCAAAGGTGGAGTCTCTCATCTGATCCAGAAGGGATAGAA-GAGTCTGCACAAGATTCTGTGCACCTGGGAATGTTTCGTGCGTTGAGGAGAGAGG i ponAbe2.chr17 C 0 T 5537 s rheMac3.chr16 53190489 981 + 80904711 GATGACAACCAAGGCTTCACTTCTCCCTGCCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCGTGATGGTGCTGATGG-GAACCATGGAGAATTTGGGATAGTGGTTCCTCCAGCATGGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCCCCTTTGACATCAATTACTGCACAGTTTTCTACATTGGTGAACAAATGGGGCTGTAACTTAACTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCCTCAGCATCACCA-TAAAACCTGCAACTAGAAATATGAAGGTGAATCACATGAGATG-ATCAGATTTATTTTGACATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCCTTCCTTTCGTTCTTCTGATTCTGTATGCTGTAATGTAAGCTAAATATGAGCTTTTGAAGAGTGATAAACAATAAATAAAAAGAAATGTGTTTACTTCCCCAGaaataaaattttatttta----tttttaCAG-GCAAAAATACAGCATACAAATAGCATTATCCTGGAAGAAAAAAAATCTCATCTGAGAACCTTGAAAT--AATACAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTGTATTTACTCA-tttttt---tttgttgttttgtt--ttgttttgttttgtttt-TAAGCCAAGAAATCAAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTACATAATTATGTGGGGAA----ACAGGATGTTATTGTTGAATTCGTGCTTGTGGATCAGCTAGGCTGCAAAGGTGGAGTCTCTCATCTGATCCAGAAGGGGTGGAA-GAGTCTGCACATGATTCTGTGCACTTGGGAATGTTTTGTGCGTTGAGGGGAGAGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52755251 984 + 80997621 GATGACAACCAAGGCTTCACTTCTCCCTGCCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCGTGATGGTGCTGATGG-GAACCATGGAGAATTTGGGATAGTGGTTCCTCCAGCATGGGATG-----TTCAGTGGTTAGGGATTCCCAGGTCCCCTTTGACATCAATTACTGCACAGTTTTCTACATTGGTGAACAAATGGGGCTGTAACTTAACTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTGCTATAGTCTCACCATTTCCTCAGCATCACCA-TAAAACCTGCGACTAGAAATATGAAGGTGAATCACATGAGATG-ATCAGATTTATTTTGACATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCCTTCCTTTCGTTCTTCTGATTCTGTATGCTGTAATGTAAGCTAAATATGAGCTTTTGAAAAGTGATAAACAATAAATAAAAAGAAATGTGTTTACTTCCCCAGAAATAAAATTTTATTTTA----TTTTTACAG-GCAAAAATACAGCATACAAATAGCATTATCCTGGAAGAAAAAAAATCTCATCTGAGAACCTTGAAAT--AATACAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTGTATTTACTCGTTTTTTT---tttgtttgtttgtttgtttgtttgtttgtttTT-TAAGCCAAGAAATCAAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTACATAATTATGTGGGGAA----ACAGGATGTTATTGTTGAATTCGTGCTTGTGGATCAGCTAGGCTGCAAAGGTGGAGTCTCTCATCTGATCCAGAAGGGGTGGAA-GAGTCTGCACATGATTCTGTGCACCTGGGAATGTTTTGTGCGTTGAGGGGAGAGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47758112 963 + 74645514 GATGACAACCAAGGCTTCACTTCTCCCTGCCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCTGTGATGGTGCTGATGG-GAACCGTGGAGAATTTGGGATAGTGGTTCCTCCAGCATGGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCCTCTTTGACATCAATTACTGCACAGTTTTCTACATTGGTGAACAAATGGGGCTGTAACTTAACTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCCTCAGCATCACCA-TAAAACCTGCGACTAGAAATATgaaggtgaatcacttgagatg-aTCAGATTTATTTTGACATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTATTCT--------AAAGCTCAAAA-ATGGCCCTTAGAAA-A---------------------TCCTTCCTTTCGTTCTTCTGATTCTGTATGCTCTAATGTAAGCTAAATATGAACTTTTGAAGAgtgataaacaataaataaaaagaaatgtgtttacttccccagaaataaaattttatttta----tttttacag-gcAAAAATACAGCATACAAATAGTATtatcctggaagaaaaaaaatctcatctgagaaccttgaaat--aatacaaaaatgggTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGATTTCCATTTactcg-tttt-------------tttgtt----------ttttttttt-taagccaagaaTTCAAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTACATAATTATGTGGGGAA----ACAGGATGTTATTGTTGAATTCGTGCTTGTGGATCAGCTAGGCTGCAAAGGTGGGGTCTCTCATCTGATCCAGGAGGGGTGGAA-GAGTCTGCACATGATTCTGTGCACCTGGGAATGTTTTGTGCGTTGAGGGGAGAGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10021940 981 - 75148670 GATGACAACCAAGGCTTCATTTCTCCCTGTCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCGTGATGGTGCTGATGG-GAACCATGGAGAATTTGGGATAGTGGTTCCTCCAGCATGGGATG-----TTCAGTGGCTAGGGATTCCCAGGTCCTCTTTGACATCAATTACTGCACAGTTTTCTACATTGGTGAACAAATGGGGCTGTAACTTAACTTAGACTTCCTCCCCCTTATCATGTGTGTGAATTATTCATAAGTCAAGTTTATGTTTACAGAGACCTACTGTAGTCTCACCATTTCCTCAGCATCACCA-TAAAACCTGCGACTAGAAATATGAAGGTGAATCACATGAGATG-ATCAGATTTA-TTTGACATGCTATTAAAATTATAGACCTTCCACCTGAGTTGTTCCTGTTCT---------AAGCTCAAAA-ATGACCCTTAGAAA-A---------------------TCCTTCCTTTCG---TTCTGATTCCGTATGCTGTAATGTAAGCTAAATATGAGCTTTTGAAGAGTGATAAACAATAAATAAAAAGAAATGTGTTTACTTCCCCAGAAATAAAATTTTATTTTA----TTTTTACAG-GCAAAAATACAGCATACAAATAGTATTATCCTGGAAGAAAAAAAATATCATCTGAGAACCTTGAAAT--AATAGAAAAAAGGGTGATGAGTCAGTGGGACAGAGTTCTATTCAAGAGGAGCTTTGAtttttatttacttg-ttcttttggtttgtgttttttttttttttttttttttttttt-tttGCCAGAAATTCGAATGATGAAAGCTGGAATTTTTCTCAAGATTGTCAGAGAGGGCCAGGATTAGCTACATAATTATGTGGGGAA----ACAGGATGTTGTTGTTGAATTCGTGCTTGAGGATCAGCTAGGCTGCAAAGGTGGAGTCTCTCATCTGATCCAGAAGGGGTGGAA-GAGTCTGCACATGATTCTGTGCACCTGGGAATGTTTTGTGCGTTGAGGGGAGAGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112906349 963 + 159171411 AATTACAACCAAGGCTTCATTTCTCCCTGTCTTCTCAGCAGCAGCCACTCCACTGGAAGTAGAACTGGCCTTGGTGGTGCCTTTGG-GAACCATGGAGAAGATGGGGTAGTGGTTCCTCCAGCATAAGATA-----TACAGTGGCTAGGGATTCCCAGGTCCTATTTGACATCAGTCACTGCACAGTTTTCTGCATGGATGAACAAATGGGGCTGTAA-----CTTGGACTTCCTCCCCCTTATCATGTGTGTGACTTATTCATGAGTCAAGTTTATGTTTACGGAGACTTACTGTACTCTCACCATTTCCTCAGCATCACCA-TAAAACCAGCAACTTAGAATATAAAGGTGAATCACATGAGATG-ATTGGATTTA-TCTGAAATGCTATTAGAATTACAGCTCTTCCACCTGAATTGTTCCTATTCT--------CAAACTCAAAA-ATGGCCCTTAGAAA-A---------------------TCCTTCCTTTCGTTCTTCTGATTCTGCATCCTGTATTGTAAGCTAAAAATGAGCTTTTGAAGCGTGATAAACAATAAATAATAAGAAATGTGTTTGCTTCCCCACAAATAAAATTTTATTTTATACTTTTTTGCAATGCAAAAATACAGCATACAAATAGTATTATACTAGAAGAAAAAAAATCTCCTCTGAGAACCTTGAAAT--AGTAGAAAAAAGGGTGATGAGTCACTGGGACGGAGTTCTATTCAAGAGGAGCTTTGATTTTTATTCACTGt-tttttt----------------------tttttttttttttt-ttAGCCAGGAATTCAAATGATGAAAGCCAGAATTTTTCTGAGGATTTTCAGAAAGGGCCAGGATTAACTGCGTAATTATGTGGGGAAATAGATAGGATGTTATTGTTGAGTTAGTGGTTGAGGATCAGCTAGGCTTCAAAGGCAGAGTCTCTCATCTGATCCAGAAGGGGTAGAG-GAGT---TGCATGATTCTGTGCACCTGGAAATGTTT-GTGTGTTGCCGGGAGAGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99613499 881 + 122082543 GATTCTAGCAAAGGCTGTATAATTC----TGTTCTCATCAGCAGCTGCATCA---GAAACCTAGCT-GCTGTGGTGGTGCTGGCTG-G---------GGAGATGAGAGAAAGACTGACCCAGGAGCTAAAGAAGACCTCAGTGATGAGGGGTTTCTGGG-------TGAGAT-GACCATGGCATAGTTTTCTATGTTGGGAAGCGAGCGGGGCTGTAA-----CTCGGACTTTGTTCCTTTTCTTGTGTGTATGAACCACTCCCAAATCATACTCAGGAT--CGAAGATCT------GTCTCACTATTTTTGTCCTGTTACCACCGAAGTCTGTGTCTTTAAAGACGAAAGCCCATTGG-CGAGATG-ATCTGAAATG-TTCAAATTCTTTTCACCATCATGGACCATGCACCTCAAAGGCTCTTGGGGGTGGGGAGGGAAGGTCAAAATACAGCTGTTAGGAACA---------------------TTTCTCCTTCTAGACATCCCATTCTGAACAGTGTAATTTACAC-ATCAATGAGGTTTCAAACATCAAGAAAGAATA---CAAAAAGGATGTGTGTACTTCACCaaaaataaaattttatttt-----ttttatCAT-GCAAAACCATAGCACAAGGATACCAT-------GCTGAAAACATATCCCATCT--GAACCTTGAAATTAAAAAAAAAAAATTACAGTGACTCAATGGGATGGA----TCTTCATGAAAAAACTTAACATTTGCTTACATA-TGCTTT-----------------------------------T-GATGCCAAGAATTCTGCTGATGGGAGCTAGAATATGTCTAGAGCTATGCAG--------ATGACTAGCTGAATATATATATGGAGAACTTGATAGGCCTTTACGGTTGGGTGAACTGGGGAAGTACAGATGGGCTGCAAAAGTGGTGTCTC---TCTGCTCCATCAGGAGTAGGACGAGT-----------TCTGTTCACCCGGAGAAGCTGCCTATG------------- i mm10.chr11 I 70 I 3 s canFam3.chr9 39451167 920 - 61074082 GGTTCCAGCCAA-ACTACAAATCTCC---TTTTCCCAGCAGCAGTGACTCCATTAGAATCA------GCCACAGTGGTGGGGGAGGAGAGTCATGGAAAAGATATGATAGTGGTTCTTCCAGCCTACGCC------TTCAGTGGTTCGGGATTCCCAGGTACCAATT-ATATTAATCGCAGCACAGTTTTCTAAATCAGGATATAAACGCGGGTCTAA-----CTTAGGCTTTTCCTCTTTTCACATGTGTGGGGATGGTTCATGGGTCAGGTGCATGCTCAGAGAAACCTGCTGTAGTCTCTCCATTTCCTCAACTTTACCA-TAAAACCTATGGCTTGAACTATG-AGGTGCCTCACATGAGATG-TTTTGCATTA-TTTGAC-TGCCATTAAAATTATAGACCTTGAACCTGATTTGTTCCT-------------AAAGCTTAAAA-ATGGCCCTTGAAAA-AAAAATGGCCCTTGAAAAATCCTTTTTTCTCTGGTTTTTCTGATTCTGCCTATCATACCATAAACTAAAAATAAGCTTTTGAAGATTAATAAACAATA----AAGAGAAACATTTTTGA-TAACCAGaaataaaatttttatta-----ttttGCCAT-GTAAAAACCTAGCATAAATATAATGATATCCTCA----AAATATGTCCCGTCA--------TGTAAC--AGCAGAGATG-TGATGATGAGTCAGCAGGATAGAGCTCCATTCAAGAGGAATTTTGATCTTTGTTCACTCA-TTTTTT-------------------------------------CAAGCCAGGAATTCAAATGATGAAAGTTGGGATGTTTCTAAAGGTTAT-AGAAGAGGCCGATATTAACTGGGTAATTATGTGGGAAAGTGGATAGACAGATACTGTTGAGTTAGTTACTGAAGAGCAGGTAAGTTGCAAAGGAGGTATCTCTCATAGGATCCTCTGGGGTGGGAA-GTGTTTTTGCATGTTTCTGAACAC-TGGGAATATTTC-----TCAATGGG----- i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=3667.000000 s hg38.chr17_JH159146v1_alt 209154 6 + 278131 TGGGGT-- s panTro4.chr17 66328136 6 - 82630442 TGGGGT-- i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53191470 6 + 80904711 TGGGGT-- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52756235 6 + 80997621 TGGGGT-- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47759075 6 + 74645514 TGGGGT-- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10022921 5 - 75148670 TGGGG--- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112907312 6 + 159171411 TGGGGC-- i calJac3.chr5 C 0 I 3 s mm10.chr11 99614383 3 + 122082543 TGG----- i mm10.chr11 I 3 C 0 s canFam3.chr9 39452087 6 - 61074082 --CGGTTC i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24862880 5537 - 73212453 T e nomLeu3.chr19 48074917 12435 - 81552678 M a score=1897580.000000 s hg38.chr17_JH159146v1_alt 209160 527 + 278131 CTCAG------------CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGAGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGACAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCGTTCCACTCTGGGCCCTTTATATATCCTAGCTGGATGCTG--ATGACCCCC--AGGACATGAGGTCATTTCCT s panTro4.chr17 66328142 527 - 82630442 CTCAG------------CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGCGTGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCGTTCCCTTCTGGGCCCTTTATATACCCTAGCTGGATGCTG--ATGACCCCC--AGGACATGAGGTCATTTCCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24857343 527 - 73212453 CTCAG------------CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGACACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGCCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACGCTGGCTGGGAGCTG--ATGACCCCC--AGGACACGAGGTCATTTCCT i ponAbe2.chr17 T 5537 I 5010 s rheMac3.chr16 53191476 527 + 80904711 CTCAG------------CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCGGGTGTGAATGTCCTCGTGCCCCTCTGGGCCCTTTATATGCCCTGGCTGGGAGCTA--ATGACCCCC--AGGACGTGAGGTCATTTCCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52756241 527 + 80997621 CTCAG------------CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCGGGTGTGAATGTCCTCGTGCCCCTCTGGGCCCTTTATATGCCCTGGCTGGGAGCTA--ATGACCCCC--AGGATGTGAGGTCATTTCCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47759081 527 + 74645514 CTCAG------------CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGCCTGCAGACCACAGCCGTGCATGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCACAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTCCTCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAggagccggtcatggtggtgtcTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCGTGCCCCTCTGGGCCCTTTATATGCCCTGGCTGGGAGCTA--ATGACCCCC--AGGACGTGAGGTCATTTCCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10022926 526 - 75148670 -TCAG------------CAGGAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGCAGCAGGGTCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGTAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCGGGTGTGAATGTCCTCGTGCCCCTCTGGGCCCTTTATATGCCCTGGCTGGGAGCTA--ATGACCCCC--AGGACGTGAGGTCATTTCCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112907321 529 + 159171411 AGCAG------------CAGGAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACTGACACAGGCTGGCAGCAGGTGGTGGTCCAGCAGCAGGGCCTGCAGACCACAGAGGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACTGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCCCCGCAGCTCAGGGAGGAGAAGGTGGATCCGCAGCAGGAGCCGCACATGGTGGTGTCTGAGACTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCTCTCTGGGCCCTTTATACACCGTGGCCAAGTGCAGATATGACCCCT--AGGACATAAGGTCATTTCCT i calJac3.chr5 I 3 C 0 s mm10.chr11 99614386 520 + 122082543 CTCAGCAGCAGGTGTTACAGGGGGAGGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCAGCAGGGGGGCCTGCAGCAGGGAGCCTGCACTGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAAGGCCTGCAGACCACAGCTGTGCAAGAGGTGGGGCAGCAGGTGATGGGGCGACAGCAGCCCTGCTGCAGGCTGCAGGGGTCACAGCAGATGGGGCGGCGGCAGGGCTCACAGATGGGCCTGGTGCAGTGGGGCACACAGGTCACAGGGCGACACACTGTGGTCTGGCAGGACACTGGGCGGCAGCAGCAGGGGTCCCTGCAGCAGCAGGGCTGGCAGCAG---------------CCTCCTCCACAGCTCTGGGAGGAGAA---GGATCCACAGCAGGAGCCTGTCATGGTGGTGTCTG-GGCTGGAGTGGGGCTGAGAAGTGAGGAGAGGTTGGGAGTTCTCAGGTACG-ATGT-CTTGTCTAGGTTGGGTCCCTTTATATAC-----CTGAACAGTG--CTGACCAAC-----------GGCCATTTCCT i mm10.chr11 C 0 C 0 s canFam3.chr9 39452093 544 - 61074082 AGCAG------------CAGGGGGAGGTCCTGCAGGTGGTGCGGCAGGGGGCAGGCTGGCAGCAGGAGGGGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAGCAGGTGGAGGCCCAGCAGCAGGGGCGGCAGACCACTGCAGTGCAGGACGTGGGGCAGCAGCTGATGGGGCGGCAGCAGCCCTCCTGCAGGGAGCAGGGGTCACAGCACACAGGGCGGCGGCAGGGCTCACAGATGGGGCGCGTGCAGCGGCAGGTGCAGGTCACGGGGCGGCACACAGTGGTCTGGCAGCTCACGGGGCGGCAGCAGCAGGGGTCGCGGCAGCAGCAGGGCTGGCAGCAGGAGGGCTGGCAGCATTCTGTGCCACAGCCCTGGGAGGAACAGATGGAACCACAGCAGGAGCCGGACATGGTGGTATGTGGGGCTGTTTAGGTT-TGGACTGGTGAGAGGATTTGGGTGTTGTCAGGTGTGAATGTCTTTGTCCTGCTTTGGGCCCTTTATATATCCTGCCCAGGTGCTG--ATGACCCCCCCAGGACACATGATCATTTCCT i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48074917 12435 - 81552678 M a score=1583816.000000 s hg38.chr17_JH159146v1_alt 209687 714 + 278131 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGCGATCCCTAAATCACTAAAGAATGCTTTGTTTTCTACCTGTCTACTTTTT---CCCTAGAACGGAATACCTGGTCATGTATATCATCAGAACAATTGCTCATCTATCAGCTAGTCCTTCCAGGCCATGCCATGTGAGAAGGTGCAAGTTTGAAGAATCCAG-----CCACCATCACACTTTCCTCTTGTTCG------CTGCCATCCGTGACTTAAGCATGGGACTGGAATGTTCATGA-GTCACAGGCTGGGTTTCTGATTGGCATTGAGATCAAGCAAGAATTTCT--------------TAAAAACCAAAATGGCTCATAAGAGCAGATGTGTATTGATTCTGCTATGGAAAGAATGGCCC----AGTGTTT------AATGACACAGTGCCTAACCTTGTTTATAAGAAAATCATCACCAAAGCTGCTAGACTGATTTTATTTTAGTAA---TCTGAGTTGGTTTATAACTCATTAACACTT-ATGAGACACTTATTATGTAGATGGTACTGTACTATTTGGGGGTGGAGGGGGAAAGGAAAGAAAAATAGCTTTCAAATAGTTTCCTATCACATAGTAATCATAACTTTTAGTAAGGCAAGACAAAGATAAATCAAGCAATTAAAGGGAAAGAACTTTTCTGGGAACAATAAGGTC-AAACTAAATGGGGATTTCATTCAT----------------------------------TCTGTGCCTTTCTGAATGC s panTro4.chr17 66328669 714 - 82630442 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGCGATCCCTAAATCACTAAAGAATGCTTTGTTTTCTACCTGTCTGTTTTTT---CCCTAGAACGGAATACCTGGTCATGTATATCATCAGAACAATTGCTCATCTATCAGCTAGTCCTTCCAGGCCATGCCATGTGAGAAGGTGCAAGTTTGAAGAATCCAG-----CCACCATCACACTTTCCTCTTGTTCG------CTGCCATCCGTGACTTAAGCATGGGACTGGAATGTTCATGA-GTCACAGGCTGGGTTTCTGATTGGCATTGAGATCAAGCAAGAATTTCT--------------AAAAAACCAAAATGGCTCATAAGAGCAGATGTGTATTGATTCTGCTATGGAAAGAATGGCCC----AGTGTTT------AATGACACACTGCCTAACCTTGTTTATAAGAAAATCATCACCAAAGCTGCTAGACTGATTTTATTTTAGTAA---TCTGAGTTGGTTTATAACTCATTAACACTT-ATGAGACACTTATTATGTAGATGGTACTGTACTATTTGGGGGTGGAGAGGGAAAGGAAAGAAAAATAGCTTTCAAATAGTTTCCTATCACATAGTAATCACAAATTTTAGTAAGGCAAGACAAAGATAAATCAAGCAATTAAAGGGAAAGAACTTTTCTGGGAACAATAAGGTC-AAACTAAATGGGGATTTCATTCAT----------------------------------TCTGTGCCTTTCTGAATGC i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53192003 710 + 80904711 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGCGATCCCTAAATCACTAAAGGATGCTTTGTTTTCTACCTGTCTGCTTTTT---CCCTTTAACTGAATACCTGGTGATGTATATCATCAGAACAATTGCTCATCTGTCAG------CTTCCAGGTCATGCCATGTGAGAAGATGCAAGTTTGAAGAATCCAGCATTGCCACCATCACACTTTCCTCTTGTTTG------CTGCCATCCGTGACTTAAGCATAAGACTGGAAAGTTCATGA-GTCACAGGCCAGGTTTCTGATTGGCATTGAGATCAAGTAAGAATTTCT--------------AAAAAGCCAAAATTGTTCATAAGAGCGGATGTGTATTGATTCTGCTATGGAAAGCATGGCCC----AGTGTTT------GATGACACAGTGCCTAACCTTGTTTGTAAGAAAATCATCACCAAAGCTGCTAGACTGATTTTATTTTAGTAA---TCTGAGTTGGTTTATAACTCATTAACACTTAATGAGACAC----TATGTAGATGATGCTGTACTATTTGGGGGTGGAGAGGGAAAGGAAAGAAAAATAACTTTCAAATAGTTTCCTATCACATAGCAGTCACAAATTTTAGTAAGGCAAGACAAAGATAAATCAAGCAATTAAAGGGAAAGAACTTTTCTGGAAACAATAAAGTC-AAAGTAAGTGGGGATTTAATTCAT----------------------------------TCTGTGCCTTTCTGAATGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52756768 709 + 80997621 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGCGATCCCTAAATCACTAAAGGATGCTTTGTTTTCTACCTGTCTGCTTTTT---CCCTTTAACTGAATACCTGGTGATGTATATCATCAGAACAATTGCTCATCTGTCAG------CTTCCAGGTCATGCCATGTGAGAAGATGCAAGTTTGAAGAATCCAGCATTGCCACCATCACACTTTCCTCTTGTTTG------CTGCCATCCGTGACTTAAGCATAAGACTGGAAAGTTCATGA-GTCACAGGCCAGGTTTCTGATTGGCATTGAGATCAAGTAAGAATTTCT--------------AAAAAGCCAAAATTGTTCATAAGAGCGGATGTGTATTGATTCTGCTATGGAAAGCATGGCCC----AGTGTTT------GATGACACAGTGCCTAACCTTGTTTGTAAGAAAATCATCACCAAAGCTGCTAGACTGATTTTATTTTAGTAA---TCTGAGTTGGTTTATAACTCATTAACACTT-ATGAGACAC----TATGTAGATGATGCTGTACTATTTGGGGGTGGAGAGGGAAAGGAAAGAAAAATAACTTTCAAATAGTTTCCTATCACATAGCAGTCACAAATTTTAGTAAGGCAAGACAAAGATAAATCAAGCAATTAAAGGGAAAGAACTTTTCTGGAAACAATAAAGTC-AAAGTAAGTGGGGATTTAATTCAT----------------------------------TCTGTGCCTTTCTGAATGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47759608 709 + 74645514 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGTGATCCCTAAATCACTAAAGGATGCTTTGTTTTCTACCTGTCTGCTTTTT---CCCTTGAACTGAATACCTGGTGATGTATATCATCAGAACAATTGCTC-CAGGTCAG------CTTCCAGGTCATGCCATGTGAGAAGGTGCAAGTTTGAAGAATCCAGCGTTGCCACCATCACACTTTCCTCTTGTTTG------CTGCCATGGGTGACTTAAGCATAAGACTGGAAAGTTCATGA-GTCACAGGCCAGGTTTCTGATTGGCATTGAGATCAAGTAAGAATTTCT--------------AAAAAGCCAAAATGGTTCATAAGAGCGGATGTGTATTGATTCTGCTATGGAAAGCATGGCCC----AGTGTTT------GATGACACAGTGCCTAAACTTGTTTGTAAGAAAATCATCACCAAAGCTGCTagactgattttattttagtaa---tcTGAGTTGGTTTATAACTCATTAACACTT-ATGAGACAC----TATGTAGATGATGCTGTACTATTTGGGGgtggagagggaaaggaaagaaaaataactttcaaatagTTTCCTATCACATAGCAGTCACAAATTTTAGTAAGGCAAGACAAAGATAAATCAAGCAATTAAAGGGAAAGAACTTTTCTGGAAACAATAAAGTCAAAAGTAAGTGGGGATTTCATTCAT----------------------------------TCTGTGCCTTTCTGAATGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10023452 708 - 75148670 GGAGTTGTAGCTGCCCGTTGAAAT-GAGAACTCTGGATTTAACTGCTGAGGCAGTGATCCCTAAATCACTAAAGGATGCTTTGTTTTCTACCTGTCTGCTTTTT---CCCTTTAACTGAATACCTGGTGATGTATATCATCAGAACAATTGCTC-CAGGTCAG------CTTCCAGGTCATGCCATGTGAGAAGGTGCAAGTTTGAAGAATCCAGCGTTACCACCATCACACTTTCCTCTTGTTTG------CTGCCATCGGTAACTTAAGCATAAGACTGGAAAGTTCATGA-GTCACAGGCCAGGTTTCTGATTGGCATTGAGATCAAGTAAGAATTTCT--------------AAAAAGCCAAAATGGTTCATAAGAGCGGATGTGTATCGATTCTGCTATGGAAAGCATGGCCC----AGTGTTT------GATGACACAGTGCCTAAATTTGTTTGTAAGAAAATCATCACCAAAGCTGCTAGACTGATTTTATTTTAGTGA---TCTGAGTTGGTTTATAACTCATTAACACTT-ATGAGACAC----TATGTAGATGATGCTGTACTATTTGGGGGTGGAGAGGGAAAGGAAAGAAAAATAACTTTCAAACAGTTTCCTATCACATAGCAGTCACAAATTTTAGTAAGGCAAGACAAAGCTAAATCAAGCAATTAAAAGGAAAGAACTTTTCTGGAAACAATAAGGTC-AAAGTAAGTGGGGATTTCATTCAT----------------------------------TCTGTGCTTTTCTGAATGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112907850 710 + 159171411 GGAGTTGTAGCTGTGGGTTGAAAT-GAGAAGTCTGGATTCAACTGCTGAGGCAGCAATTCCCAAATCACTAGAGGATGCTTTGTTTT----CTGTCTGCTTTTT---CCCTTGAACTGAATACCTGATGATTTATGTCATCAGAAAAATTGCTCTTCCATCAGCCAATCCTTCCAGACCACGCCATGTGAGAAGGTGCAAGTTTGAAGAATCCAGCGTTGCCACCATCACACTTTTCTCTTGTTTG------CTGTCTTTCATGACTTAAGCATGAGACTGTGGTGTTCATGA-GTCACAGGCTGGGTTTCTGATTGGCACTGAGATCAAGCAAGAATTTCT--------------AAGAAACCAAAATGGCTCAT-AGAGGAGCTGTGTATTGATTCTGCTATGGAAAGAATGGCCTAGTGAGTGTTT------AATGACACGGTGCC-----TTGTTTATAAGAAAATCATCACCAGAGCTGCTAGCATGATTTTATTTTAGTCA---TCTGAGTTGGCTTATAACTC---AACACTT-AGGAGACACTTACTGTGTAGATGGTGCTGTACCATTTGGGGGTGGAGAGGGAAAGGAAAGAGAAATAACTTTCAAATAGTTTCTTATTACATAGTAATCACAAATTTTAGTAAGGCAAAATAAAGACGAGTAAAGCAATTAAAGGGAAAGAACTTTTCTGGGAACGATAAGGTC-AAACTAAATGGGGATGTCGTTCAT----------------------------------TCTGTGCTGTTTCAAAAGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99614906 718 + 122082543 GGACTTGTGGTTACCCAATGAAAA-GAGAGCCCTGGATTCAGTTGCC-AGGCAACATTTCTAATATC-TGCAAGGATGCTTTTCTTCCTAGCCTTCT-CCTATT---CCCTTGGAATGAACACTTGGTAATTTGTATCATCAGAACTATTGCTCACCTGTCAGTCAATCCTCCCAGGCTAGACCATGTGACAGATTGAAAGTCCAGAGGACACACTGGTG-----ATGTCACTTTCCCCTTGTTCA------CAGTC-TCTGAG---TCGGTGTGAGCCTACAATGCACATGA-GTCACCAGCCTGAGCTCTGAGTGACATCCAGACCCAGTAACAATTCCT--------------GAAGAGCCAAGATGGCTCATAAAAGTAGGTGTGTGTCTATGTTGTTATGGAAAATATGCCCC----AGGGCTTCTGGAAAATGGATTATTACC-----TTGTTCCTGGAGACTGAGTCACCAAAGC-ATCAGAGTGG---CATTTGAGAAAGGTCTTGAATTGTCCCGTAACTGGAAACTTCTC-ATGAGACACTTAATATGTGAA-----CAGGACAATTTGGGG-------GATAGAGAAGAAAAAACTAGGCCTTGA--AATTTCCTACCACAGAGCAGTGACGATTTGTAAGGAGACAAGCTAAAACTAA---AAGCCATTTAAGGTGAAAAACTTTGT------AAATAAGATC-AAACCAAGTGACAGTTTTACTCATGCCTGTCTTCTAAATTTGTCTCTTGATTATTATATTTCTTGCTTCCTAAGTGC i mm10.chr11 C 0 I 213 s canFam3.chr9 39452637 744 - 61074082 GGAGTTGTGGTTGCCCATTGACCTCTAGATTGGTGGATTCAATTGCTGAAGCAGCAACTCCAACATCATGGAAGGATGCTTTCCTTTCTGCCTGTCTGCTTTCTTCCTCCTTGAAATGAATACTTGATGATTTATATCATCCAAAAAATTACTCGTGGAATAACCAGCCCTTCCAGACCATGTCACATGACAAGTTGAAAGTTTGACGATCCCAGTGTTGCTACCATCATACTTTCCTCTTGTTCGTCTTGTTCACCATCCATGAC-TAAGTGTGAGATTGTAA-GTTCATGAGGTCACAGGCCTGGTTTCTGAATGACATTGAAATGAAGCAAGAATTTCTAAAAAAAAAAAAAAAAAAAGCCAAAATTACTCATAGAAGGAGACGTGTACTGATACTGCTAAGGGAAGAATTGCCC----AGTGCTTCTGGAAAACAACATAGTGCTTCACCTTGTTTATAAGGAAATAATTACCAGAGCCGCTGGAGTGATATT-TTTTAGTAA---CCATAGTTGGCCTATAAATCACAGTCACTT-CTGAGACTCTTACTGTATAAACAGCACCACATTATTTGGGAGTGAAGAGGGAAAGGA-AGAAAATTAAGTTCTAAGAAGTTTCTTATCACACGGTAATTACAAATGTTAGGATGGCAAGACAATGGTAAATTAAGTGATTGAAGGAGAAG-GCTTTTCATGGAACAATAAAGTC-AAACTAAGTGAAAACTTTATTCAT----------------------------------ATTATGCATTT-TGAATGC i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=173404.000000 s hg38.chr17_JH159146v1_alt 210401 91 + 278131 CCTTCCCTGATTATTGACCTAGAAATAAAATTGAAATTGGGCTATTTCTTGCTTTCTTGCTTTGA-CATATGCACTTTGTATTACATACTTA s panTro4.chr17 66329383 91 - 82630442 CCTTCCCTGATTATTGTCCTAGAAATAAAATTGAAATTGGGCTATTTCTTGCTTTCTTGCTTTGA-CATATGCACTTTGTATTACATACTTA i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53192713 90 + 80904711 CCTTCCATGATTATTGTCTTAGAAATAAAATTGAAATT-GGCTATTTCTTGCTTTCTTGCTTTGA-CATATGCACTTTGTATTACATACTTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52757477 90 + 80997621 CCTTCCATGATTATTGTCTTAGAAATAAAATTGAAATT-GGCTATTTCTTGCTTTCTTGCTTTGA-CATATGCACTTTGTATTACATACTTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47760317 90 + 74645514 CCTTCCATGATTATTgtcttagaaataaaattgaaatt-ggCTATTTCCTGCTTTCTTGCTTTGA-CATATGCACTTTGTATTACATACTTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10024160 90 - 75148670 CCTTCCATGATTATTGTCTTAGAAATAAAATTGAAATT-GGCTATTTCTGGCTTTCTTGCTTTGA-CATATGCATTTTGTATTACATACTTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112908560 91 + 159171411 CCTTCCCTGATTATCATCTCAGAAATAAAATTGAAATTGGGCTATTTTCTGCTTCCTTGCTTTGA-TATGTGTACTTTGTATTACATATTAC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39453381 91 - 61074082 CCCTCCCTGAGTATGGTCTTAGAAATATAATTGAAATTGAGGTTGCTCTTTCTTTACAGGTGTGACCATAAACAC-TTGTACTGAGTTCTTC i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e mm10.chr11 99615624 213 + 122082543 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=269004.000000 s hg38.chr17_JH159146v1_alt 210492 119 + 278131 AAAATCTATGGACAATATCTACAAAGGAATCAATTATCTTTCTGTCACAGCTTCTTTAGTTTGTTGGCTGAGGGTTTTGTTTGTTTATGAGGTGGGAAGGTGGCATTATGAAAAAGACA s panTro4.chr17 66329474 119 - 82630442 AAAATCTATGGACAATATCTACAAAGGAATCAATTATCTTTCTGTCACAGCTTCTTTAGTTTGTTGGCTGAGGGTTTTGTTTGCTTATGAGGTGGGAAGGTGGCATTATGAAAAAGACA i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53192803 119 + 80904711 AAAATCTATGGACAATATCTACAAAGGAATCAGTTATCTTTCTGTCACAGCTGCTTTAATTTGTTGGCTGAGGGTTTTGTTTGCTTATGAGGTGGTAAGGTGGTATTATGAAAAAGACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52757567 119 + 80997621 AAAATCTATGGACAATATCTACAAAGGAATCAGTTATCTTTCTGTCACAGCTGCTTTAGTTTGTTGGCTGAGGGTTTTGTTTGCTTATGAGGTGGTAAGGTGGTATTATGAAAAAGACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47760407 119 + 74645514 AAAATCTATGGACAATATCTACAAAGGAATCAGTTATCTTTCTGTCACAGCTGCTTTAGTTTGTTGGCTGAGGGTTTTGTTTGCTTATGAGGTGGTAAGGTGGTATTATGAAAAAGACA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10024250 113 - 75148670 AAAATCTATGGACAATATCTACAAAGGAATCAGTTATCTTTCTGTCACAGCTGCTTTAGTTTGTTGGCTGAG------GTTTGCTTATGAGGTGGTAAGGTGGCATTATGAAAAAGACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112908651 118 + 159171411 AAAATTTGTGGGTAGTATCTACGAAGGGATCTATTGTCTTTCTGTCCCAGCTGCTTTAGTTTGTTGGCTGAGGGTTT-GTTTGCTTATGACGTGGGAAGGTGGCATTATGAAAAAGACA i calJac3.chr5 C 0 I 530 s mm10.chr11 99615837 117 + 122082543 AAAATCTATTGAACATATTTGAGGAGGAATCAATTATCTTACTGTAGTCAATA-TGTGGATTGATGGCTGAGAATTGTGACTGCTTATAAAAT-ATGATATAAGATTATTAGAAGGACA i mm10.chr11 I 213 C 0 s canFam3.chr9 39453472 116 - 61074082 AAAACATATTGAAAATATTTATAAAGAAATCAATTATCTTTCTCTAGTAGATGCTTCAGTCTGTTGGCTAAGGGTTT-GGTTGCTTATGAAGTGCGAAATTGGCTTCAGAGAAAACA-- i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=385146.000000 s hg38.chr17_JH159146v1_alt 210611 188 + 278131 AGGGGAATTAGTTTAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTCCAGCCATAGCAAAGATGAATAG--GAATACAGAAAATAAATTTAGAGTTGGAAGGTAGATTAAAGATAACATTGTCCAAGGAATGCTGATGGTCT-TCAGTGCAAATTTACCTCTGAG-GTGTGTTTTGTTTTGTTTTCTCTTTT s panTro4.chr17 66329593 188 - 82630442 AGGGGAATTAGTTGAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTCCAGCCATAGCGAAGACGAATAG--GAATACAGAAAATAAATTTAGAGTTGGAAGGTAGATTAAAGATAACATTGTCCAAGGAATGCTGATGGTCT-TCAGTGCAAATTTACCTCTGAG-GTGTGTTTTGTTTTGTTTTCTCTTTT i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53192922 188 + 80904711 AGGGGAATTAGTTGAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTACAGCCATAGTGAAGACGAATAG--GAATACAGAAAATAAATTTTGTGTTGGAAGGTAGATTAAAGATAACATTGCCCAAGGAATGCTGATGGTCT-TCGGCACAAATTTACCTCTGAG-GTGTGTTTTGTTTCGTTTGCTCTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52757686 188 + 80997621 AGGGGAATTAGTTGAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTCCAGCCATAGTGAAGACGAATAG--GAATACAGAAAATAAATTTAGTGTTGGAAGGTAGATTAAAGATAACATTGCCCAAGGAATGCTGATGGTCT-TCGGCACAAATTTACCTCTGAG-GTGTGTTTTGTTTTGTTTGCTCTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47760526 188 + 74645514 AGGGGAATTAGTTGAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTCCAGCCATAGTGAAGACGAAtag--gaatacagaaaataaatttagtgttgGAAGGTAGATTAAAGATAACATTGCCCAAGGAATGCTGATGGTCT-TCGGCACAAATTTACCTCTgag-gtgtgttttgttttgtttgctctttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10024363 188 - 75148670 AGGGGAATTAGTTGAGCTGGTGACCAATAAAATAGC-TTTGTCTTTTCCAGCCATAGTGAAGACGAATAG--GAATACAGAAAATAAATGTAGAGTTGGAAGGTAGATTAAAGATAACATTGTCCAAGGAATGCTGGTGGTCG-TCGGCGCAAATTTACCTCTGAG-GTGTGTTTTGTTTTGTTTGCTCTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112909299 184 + 159171411 AGGGGATTTAGGTGAGCCGGTGACTGACAAAATAGC-TCTGTCTTTTCCAGCCATAGCTAAGACGAATAG--GAATACAGAAAATACATTTAGAGTTGGAAGGCAGATTAAAGACAACAGAGTCTGAGGAATGCTGATGTCCT-TTAGCACAAATTTGCCTCTGGG-GTGTGTTTTGTT---TGTGCT-TTTA i calJac3.chr5 I 530 C 0 s mm10.chr11 99615954 172 + 122082543 ---AGACTTAGTGGAG-TAGTGACTGCATAAAGAAT-TTTATGTATCACCACTAC----------AATAGTCAGATACCAGAGATAAGTCAAGGTTTGGGAGGCTGCTGTATG----CATTGGACAAGGATTGCTGA-GGACT-CTGGATCAAGTTTGCCTCTGAGTGTGtgtgatggctagtttggattgtc i mm10.chr11 C 0 I 330 s canFam3.chr9 39453588 189 - 61074082 AGGGTAATCAGGTGTACTGATGACTGATAAAATAGCTTTTGTCTGTCTCAAACACAGCTAAAGAAAGTGG--GAGTATAAATAATAAATGTAGAGTTAGAAGGTAGATTAAGGATGACATTGTCCAAGTCTTGCTGATTGACTCTCAGACCAAATTTGCCTCCACA-AAATGTTTTATTTGATATGACCACA- i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=801111.000000 s hg38.chr17_JH159146v1_alt 210799 417 + 278131 TAAAAATACACCCTTTGGTCTATCATATCCCTGATCTTTGAAGTCCTTTGAGTCTATGATCCATCATAGTCCATCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTACGGATCAAAGAGTGGCAAATATTTAGCAATAC----CACAGGTCTTCTGTGGAGTAGAAACACTGGTG-ATGTCTCCCAGTCTTTTTCCAACTCGGAGTCAC-TCAAAATAGATAACATGTAGCAGTAGTTATTAAA--AAGTTTTATTCCCTTTAGTGAAATAAAATAAGTACTCACTTGATACATGGTTTAGCATTCTGTTCTTTGTTTTGGAATGTATACAGAGATGCCAA-ACTAAAAAGAGAAATATGTCTGTAAATCCACTGCTTTTGTTAAC-----AAAAGAACACAGTactaagaaat s panTro4.chr17 66329781 417 - 82630442 TAAAAATACACCCTTTGGTCTATCATATCCCTGATCTTTGAAGGCCTTTGAGTCTATGATCCATCATAGTCCACCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTACAGATCAAAGAGTGGAAAATATTTAGCAATAC----CACAGGTCTTCTGTGGAGTAGAAACACTGGTG-ATGCCTCCCGGTCTTTTTCCAACTCGGAGTCAC-TCAAAATAGATAACATGTAGCAGTAGTTATTAAA--AAGTTTTATTCCCTTTAGTGAAATAAAATAAATACTCACTTGATACATGGTTTAGCATTCTGTTCTTTGTTTTGGAATGTATACAGAGATGCCAA-ACTAAAAAGAGAAATATGTCTGTAAATCCACTGCTTTTGTTAAC-----AAAAGAACACAGTactaagaaat i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53193110 414 + 80904711 TAAAAATACA-CCTTTGGTCTACCATATCTCTGATCTTTGAAGGCCTTTGAGTCTATGATCCATCGTAGTCCATCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTACAGATCAAAGAGTGGCAAATCTTTAACAATAC----CACAGGTCTTCTGTGGAGTAGAAACACTGGTG-ATGTCTCCTAGTCTTTTTCCAACTTGGAGTCAC-TCAAAATAGACAACATGTAGCAGTTGTTATTAAA--AATTTTTATTCTCTTTAGTGAAATAAAATAAGTACTCACTTGATACATGGTATAGCATACTGTTCTTTGTTTCGGAATGTATACAGAGATGCCAA-ACTAAAA--AGAAATATGTCTATAAATCCACTGCTTTTGTTAAC-----AAAAGAACGCAGTATGAagaaat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52757874 414 + 80997621 TAAAAATACA-CCTTTGGTCTACCATATCTCTGATCTTTGAAGGCCTTTGAGTCTATGATCCATCGTAGTCCATCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTACGGATCAAAGAGTGGCAAATCTTTAACAATAC----CACAGGTCTTCTGTGGAATAGAAACACTGGTG-ATGTCTCCTAGTCTTTTTCCAACTTGGAGTCAC-TCAAAATAGACAACATGTAGCAGTTGTTATTAAA--AATTTTTATTCTCTTTAGTGAAATAAAATAAGTACTCACTTGATACATGGTATAGCATACTGTTCTTTGTTTCGGAATGTATACAGAGATGCCAA-ACTAAAA--AGAAATATGTCTATAAATCCACTGCTTTTGTTAAC-----AAAAGAACGCAGTATGAagaaat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47760714 414 + 74645514 taaaaataca-cctttGGTCTACCATATCTCTGATCTTTGAAGACCTTTGAGTCTATGATCCATCATAGTCCATCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTACGGATCAAAGAGTGGCAAATCTTTAACAATAC----CACAGGTCTTCTGTGGAGTAGAAACACTGGTG-ATGTCTCCTAGTCTTTTTCCAACTTGGAGTCAC-TCAAAATAGACAACATGTAGCAgttgttattaaa--aatttttattctctttagtgaaataaaataagtacTCACTTGATACATGGTATAGCATACTGTTCTTTGTTTCGGAATGTATACAGAGATGccaa-actaaaa--agaaatatgtcTATAAATCCACTGCTTTTGTTAAC-----AAAAGAACGCAGTACgaagaaat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10024551 414 - 75148670 TAAAAATACA-CCTTTGGTCTACCATATCCCTGATCTTTGAAGGCCTTTGCGTCTATGATCCATCATAGTCCATCACAGTTTTTGGAAGACCAGATTTACAAAATGAATTCCTCCAAAGTCGTATGGATCAAAGAGTGGCAAATCTTTAACAATAC----CACAGGTCCTCTGTGGAGTAGAAACACTGGTG-ATGTCTCCTAGTCTTCTTCCAACTTGGAGTCAC-TCAAAATAGACAACATGTAGCAGTTGTTATTAAA--AATTGTTATTCCCTTTAGTGAAATGAAATAAGTACTCACTTGATACATGGTATAGCATACTGTTCTTTGTTTTGGAATGTATACAGAGATGCCAA-ACTAAAA--AGAAATATGTCTATAAATCCACTGCTTTTGTTAAC-----AAAAGAACGCAGTACGAagaaat i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112909483 409 + 159171411 AAAAAATATACCCTTTGGTTTACTGTATCCCCGATCTTTGAAGGCCATTGAGTCTACGGTCCATCACAGTCCATCAC----TTTGGAAGACCAGATTTATGAAATGAATTCCTCCAAAGTCATA-GTATCAAAGAGTAGCACATCTTTAACGATACCACACACAGGTCTTCTGTGGAGAAGAAACATTAGTG-AGGTCTCCTAGTCTTTTT-CAGCTCAGAGTTAC-TCAAAATAGACAATGTGTAGCAGTGGTTATTAAA--CA-TTCTATTCCCTTTAGTG-----AAATAAGTACTCACTTGATACGTGGTTTAGGATACTGCTCTTTGTTCTGGAACATATACAGAGATGCCAA-ACTAAAAAGAGAAATATGTCTGTGAATCCACTGCTTCTGCTAAC-----AAGAAAACACGttactaagaaat i calJac3.chr5 C 0 C 0 s canFam3.chr9 39453777 421 - 61074082 TATATATACATTCATTCGTCTGCCACAGGCCAGGTCCTTGAAGGTCTTTGAGTTTGTGACCCATAATAGTCCTTCACAGGTTCTGAGGGGCTTGATTTGTGAAATG-ATTTCTCTAAAGTCATGCAGATAAAAGCATGGTAAATAGTTGACGACAG----TGT-GGTCTTCTCTTGACTATAAACACCGATGAATGACCTCTAGACTT-TTCCAACTCTCAGTTACTTCAGACTAGTGAACAGGTAATCATAGTTATCAAATCAAGTT---TCTCATCTATTGAAATAAAATGGAAACTTGCTTGATTTACAGTTTAGTGTACTGTTTTTTTTATTAGAATATATACAGCAATTCAAATATTAGGAATAGATAGATGTCTATAAACTAACTGCATTTGTTAACTAACAGAAAAGACTGAATactaagaaat i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e mm10.chr11 99616126 330 + 122082543 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=2187656.000000 s hg38.chr17_JH159146v1_alt 211216 1051 + 278131 actgttttctaaaattataggctg--ttagaaaccttgctcttccaagccacatcagtaagaaggaaacatttcactcttgcctagacaggatctaagtcatctggacagagaa--gcaacctcagta-cccaa-cccaggtacagaatttcagacaagtgacttgcagacacaacattccccatttgtctcaac-tat-acagtttccagtgaaaga-ggaccataagtctgtttcacagctcaggtctggtgttaattattttttatacacagccctgttttt-cttgagcctatgaaaacactatgtcacgtaattttacc---------ccaccattcctcaacattttataataacatttctcctcctttgtttgggaggatgccccatggtcctcagccatgtggtctcccttgctgtagcacattaatagtcctaagc-tattggacaagagatgtatccctggtCTTTACCACATGGACTTTTTTAG-TCATGTTATTCAAGTTCCACACATTCTTCAAGTGCATAATCACCAGGATGGAAACAAGTAAATCTGAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAAGAATGTAGTGTTGGTGACCTCTTGTGATGGTGGGCCATGCCCTCTTCTTAATAGTTTTATGAATTATATTTTGTTAGGAACTAGTCT---GGAAGCCACTAGATGTTAGGAAAATTATTAAAATTCTAAAATTAGAAAATACATTCCTTAAGGACTTCGTTCTCAGAAATAATCTTAAAAATATCCTCCAATCATAAGAGTCAGGGATG-GG-ATGGGGAATATTGACGGGCACAgggcaggaggaaaatggagaagataaagaaggattccagtcctttctccacctctttgcagttgtctaacttagagtaaatgacttac-------------ccttagcca-g---gtttcctca--tctgtaaaatgggCAGAGTCTTCGGTGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATACAAACATGGAAGAC-AGAGAAAGGGATATAATTAATTAGATATAATTAGAAAAGAAAAG s panTro4.chr17 66330198 1051 - 82630442 actgttttctaaaattataggctg--ttagaaaccttgctcttccaagccacatcagtaagaaggaaacattccactcttgcctagacaggatctaagtcatttggacagagaa--gcaacctcagta-cccaa-cccaggtacagaatttcagacaagtgacttgcagacacaacattccccatttgtctcaac-tat-gcagtttccagtgaaaga-ggaccataagtctgtttcacagctcaggtctggtgttaattattttttatacacagccctgttttt-cttgagcctatgaaaacactacgtcacgtaattttacc---------ccaccattcctcaacattttgtaataacatttctcctcctttgtttgggaggatgccccatggtcctcagccatgtggtctcccttgctgtagcacattaatagtcctaagc-tattggacaagaggtgtatccctggtCTTTACCACATGGACTTTTTTAG-TCATGTTATTCAAGTTCCACACATTCTTCAAGTGCATAATCACCAGGATGGAAACAAGTAAATCTGAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAAGAATGTAGTGTTGGTGACCTCTTGTGATGGTGGGCCATGCCCTCTTCTTAATAGTTTTATGAATTATATTTCGTTAGGAACTAGTCT---GGAAGCCACTAGATGTTAGGAAAATTATTAAAATTCTAAAATTAGAATATACATTCCTTAAGGACTTCATTCTCAGAAATAATCTTAAAAATATCCTCCAATCATAAGAGTCAGGGATG-GG-ATGGGGAATATTGATGGGCACAgggcaggaggaaaatggagaagataaagaaggattccagtcctttctccacctctttgcagttgtctaacttagagtaaatgacttac-------------ccttagcca-g---gtttcctca--tctgtaaaatgggCAGAGTCTTCGGCGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATGCAAACATGGAAGAC-AGAGAAAGGGATATAATTAATTAGATATAATTAGAAAAGAAAAT i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53193524 1035 + 80904711 acttttttctaaaattataggctg--tcagaaaccttgctcttc--atccatatcagtaagaagcaaacattccactcttgcctggacaggatctaagtcatttggacagagaa--gcaacctcagta-cccaa-accaggtgcagaatttcagacaattgactttcagacacaacattccccatttgtcttaac-tat-acagcttccagcaaagga-ggaccataagtctgtttcacagaccacatctggtgttaattattttttaaacacagccctgtttttccctgagcttatgaaaacactatgtcatgtaattttacc---------ccaccattcctcaacattttataataacatttct-ctactttgtttgggaggatgccctgtggtcctcagccatgtggtctcccttgctatagcatgttgatagtcctaagc-tattggacaagaggtgtgtccctggtCTTTACCACATGGAC-TTTTTAG-TCATATTATTCAAGTTACACACATACTTCAAGTGCATAATCACCAGGATGGAAACAAGTAAATCTTAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAAGAATGTAGTGTTGGTGACCCTTTGTGATGGTGGGCCACGCCCTCTTCTTAATAGTTTTATGAATTGTATTTTGTTAGGAACTAGTCT---GGGAGCCACTAGATGTTAGGAAATTTATTAAAATTCTGAAATTAGAATATACATTCCTTAAGGACTTTGTTCTCAGAAATAATCTTAAAAATATCCTCCAATCGTAAGAGTCAGAGATG-GG-ATGGGGAAGATTGATGGGCAAAGGGCAGGAGGAGAATGGAGAAGATAAAGAAggattccaatcctttctccgtctctttgcagtt------------gtaaatgactta--------------ccttagcca-g---gtttcctca--tctgtaaaatgggCAGAGTCTTCAGTGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATGCAAATGTGGAAGAC-AGAGAGAGGAATATAATTAATTAGATATAATTAGAAAAGAGAAA i rheMac3.chr16 C 0 I 2 s macFas5.chr16 52758288 1035 + 80997621 acttttttctaaaattataggctg--tcagaaaccttgctcttc--atccatatcagtaagaagcaaacattccactcttgcctggacaggaactaagtcatttggacagagaa--gcaacctcagta-cccaa-accaggtgcagaatttcagacaattgactttcagacacaacattccccatttgtcttaac-tat-acagcttccagcaaagga-ggaccataagtctgtttcacagaccacatctggtgttaattattttttaaacacagccctgtttttccctgagcttatgaaaacactatgtcatgtaattttacc---------ccaccattcctcaacattttataataacatttct-ctactttgtttgggaggatgccctgtggtcctcagccatgtggtctcccttgctatagcatgttgatagtcctaagc-tattggacaagaggtgtgtccctggtCTTTACCACATGGAC-TTTTTAG-TCATATTATTCAAGTTACACACATACTTCAAGTGCATAATCACCAGGATGGAAACAAGTAAATCTTAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAAGAATGTAGTGTTGGTGACCCTTTGTGATGGTGGGCCACGCCCTCTTCTTAATAGTTTTATGAATTGTATTTTGTTAGGAACTAGTCT---GGGAGCCACTAGATGTTAGGAAATTTATTAAAATTCTGAAATTAGAATATACATTCCTTAAGGACTTTGTTCTCAGAAATAATCTTAAAAATATCCTCCAATCGTAAGAGTCAGAGATG-GG-ATGGGGAAGATTGATGGGCAAAGGGCAGGAGGAGAATGGGGAAGATAAAGAAggattccaatcctttctccatctctttgcagtt------------gtaaatgactta--------------ccttagcca-g---gtttcctca--tctgtaaaatgggCAGAGTCTTCAGTGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATGCAAATGTGGAAGAC-AGAGAGAGGAATATAATTAATTAGATATAATTAGAAAAGAGAAA i macFas5.chr16 C 0 I 2 s papAnu2.chr16 47761128 1037 + 74645514 acttttttctaaaattataggCTG--TCAGAAACCTTGCTCTTCCAAGCCGTATCAGTAAGAAGCAAACATTCCACTCTTGCCTGGACAGGATCTAAGTCATTTGGACAGAGAA--GCAACCTCAGTA-CCCAA-ACCAGGTGCAGAATTTCAGACAATTGACTTTCAGACACAACATTCCCCATTTGTCTTAAC-TAT-ACAGCTTCCAGCAAAGGA-GGACCATAAGTCTGTTTCACAGACCACATCtggtgttaattattttttaaacacagcCCTGTTTTTCCCTAAGCTTATGAAAACACTATGTCATGTAATTTTACC---------CCACCATTCCTCaacattttataataacattTCT-CTACTTTGTTTGGGAGGATGCCCTGTGGTCCTCAGCCATGTGGTCTCCCTTGCTGTAGCACGTTAATAGTCCTAAGC-TATTGGACAAGAGGTGTGTCCCTGGTCTTTACCACATGGAC-TTTTTAG-TCATATTATTCAAGTTACACACATACTTCAAGTGCATAATCACCAGAATGGAAACAAGTAAATCTTAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAAGAATGTAGTGTTGGTGACCCTTTGTGATGGTGGGCCACGCCCTCTTCTTAATAGTTTTATGAATTGTATTTTGTTAGGAACTAGTCT---GGGAGCCACTAGATGTtaggaaatttattaaaattctgaaattagAATATACATTCCTTAAGGACTTTGTTCTcagaaataatcttaaaaatatcctccaatcGTAAGAGTCAGAGATG-GG-ATGGGGAAGATTGATGGGCAAAGGGCAGGAGGAGAATGGAGAAGATAAAGAAGGATTCCAatcctttctccatctctttgcAGTT------------GTAAATGACTTA--------------CCTTAGcca-g---gtttcctca--tctgtaaaatgggcagagTCTTCAGTGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATGCAAATgtggaagac-agagagaggaataTAATTAATTAGATATAATTAGAAAAGAGAAT i papAnu2.chr16 C 0 I 2 s chlSab2.chr16 10024965 1037 - 75148670 acttttttctaaaattataggctg--tcagaaaccttgctcttccaagccgtatcagtaagaagcaaacattccactcttgcctggacaggatctaagtcatctggacagagaa--gcaacctcagta-cccaa-accaggtgcagaatttcagacaattgactttcagacacaacattccccatttgtctcaac-tat-acagcttccagcaaaaga-ggaccataagtctgtttcacagaccacatctggtgttaattattttttaaacacagccctgtttttccctgagcttatgaaaacactatgtcatgtaattttacc---------ccaccattccttaacattttataataacatttctgctcctttgtttggga-gatgccctgtggtcctaagccatgcggtctcccttgttgtagcaagttaatagtcctaagc-tattggacaagaggtgtgtccctgatCTTTACCACATGGAC-TTTTTAG-TCATATTATTCAAGTTACACCCATACTTCAAGTGCATAATCACCAGGATGGAAACAAGTAAATCTTAAGCACAGTGAAAATAACTTGTGAGATTTTTGTAGTTGGATAGATAAATAATGTAGTGTTGGTGACCCTTTGTGATGGTGGGCCACGCCCTCTTCTTAATAGTTTTATGAATTGTATTTTGTTAGGAACTAGTCT---GGGAGCCACTAGATGTTAGGAAATTTATTAAAATTCTGAAATTAGAATATACATTCCTTAAGGACTTTGTTCTCAGAAATAATCTTAAAAATATCGTCCAATAGTAAGAGTCAGAGATG-GG-ATGGGGAAGATTGATGGGCAAAGGGCAGGAGGAGAATGGAGAAGATAAAGAAggattccaatcctttctccacctctttgcagtt------------gtaaatgactta--------------ccttagcca-g---gtttcctcg--tctgtaaaatgggCAGAGTCTTCAGTGCCTGGTGTTCTTCAGAGGCT-GGCTTATCATAAAATCCATGCAAATGTGGAAGAC-AGAGAGAGGAATATAATTAATTAGATATAACTAGAAAAGAGAAA i chlSab2.chr16 C 0 I 2 s calJac3.chr5 112909892 1057 + 159171411 actgttttctaaaattataggctgtatcagaaaccttgctcttccacgcctcattagtaagaagaaaacattccactcttgcctggacaggatctaagtcgtttggacaggaaa--gcaacctcagta-cccaa-cccaggtacaggatttcagacaagtgactttcaaacacaacattccccatttgtctcaac-tgt-gcagcttccagtgaaaga-gg-ccctaggtctatttcacagcccaggtctggtgttaattattttttatacacagccctgtttttccttgagcccatgaaaacactatatcatgtaattttaccaaaac---tccacccttcctcaacgttttataataatatttctcctccttagtttgggaggatgccccattgtcctcggccatgtggtctcccttgctgtagcacacaaatagttctaagc-tattggacaagaggtgtgtctctggtCTTTATCACATGAACTTTTTCAG-TCATATTATTCAAGTTTCACATATTCTACAAGTGCAAAATCACCAGGATAAAAACAAGTACATCTTAAGCACAGTGAAAATAACTTGGGAGATTTTTGTAGTTGGACTGAAAAATAATGTAGTGTTGGTGACCTTTTGTGATGGTGGGCCAGTCCCTCATCTTAATACTTTTATGAATTGTATTTTGTTAGCAATTAGTCT---GGGAGCCAGTAGATGTTAGGAAATTTATTAAAATTCTGAAATTAGAATATACATTCCTTAAGGACTTTGTTCTCAGAAATAATCTTAAAAATATCCTCCAATCATAAACGTCAAAGATG-GG-ATGGAGAAGATTGACGGGGAAAgggcaggaggagaatggagaagataaagaaggattccagtcctttctccaccattttatagttgtctaacttagagtcaatgacttac-------------ccttagcaa-g---gtttcctca--tctgtaaaatggAC--AGTCTTTGGTGTCTGATGTTCTTCAGAGGCT-AGTTTATTCTAAGATCTATACAAATGTGGAAGAT-GGAGAGAGGGATATAATTAATTAGATATAATTAGAAAATAGAAA i calJac3.chr5 C 0 I 2 s mm10.chr11 99616456 837 + 122082543 attgcactttaaa-------------ataaaagccttgcttccttcaattgccacagtcagga--------------------------------atgttgtcacaacaGA------------TAGTA-ACTAGTACAAGACTCCAAATTTCAGGTAGGAGATGTGAAGTTGTAATACTGTTCTTTCCTTTCACCATATCATTATTTCCTCTGGAAGATGGGTCATATGTTTGTTCCATAACCCACA-CTGACATTGG--ATGTTTTGTGTACAGTCGTGTTC-------AGCTTATCCAGACACAATCCCGTGCAAGGATACCAGAACGCTGCCACGGTC-----AGATCCTACGACCACTTTTGG-TTCTTCTGCTCTAGAG------------------------------CTCTTGCTGACACACAGTCAGGGAT-GGACT-TGTT--ACATGGAGACTGTCCCTAAACTTTATGACATGATC-TTTTAATCTCATATTATTCTAGTTCCAAGCATTCTGCAAGAGTGTAATCACCAG--TGGGAATATGCACATTTTAAGGATAATGATAATTAATCATGAGA--CTTGTCATTTGATTGGCAAAGAACATAATGATGGTGAC------TGTTGGTAGGCCGTGTCCTCATCTCAATAGTTTTATG-ATTGTGTCCTCTCAGGAACTAGGTTGGCGGGGGCTTCTAGATGTCAGGGGGTGT-CTACAATTCTGAAAACAGAGTATGTTTTTCATAGAGAGTCCATTCATAG-------------------------TCATAGGAGCCAGAAATGAGG-ATGGGGAGGGTTGAGGG---------AAGAGGGAACTGT-------------GTATCTCAG------------------------------------GCAAAGGACATCT-------------TCCCAGCCACA---GCTTCTGCA--TCTGTCAAGTGG----AGTCATCACTGCCTGGAGTTCTTCACAGACT-GATTTATT--------CACACAAATG--------------GATGAATATAATTAACCA-----------AAAAGAGAAG i mm10.chr11 I 330 I 2 s canFam3.chr9 39454198 1036 - 61074082 tctgggtcctgaaatcatagactg--tcagaaactttgctctttcaagccatatcagtaagaatggaagagcccactatttctaggaaaagatctgagtcgccttaacacagaatggtagcctcaatattccaa-cacaaaggcagagtttcagaaaagagattttcagatacagcattgctcatttatcttaac-tat-gcagttttcaaagaaagg-agacc-taagtcc-tatcacaacccagtcctgatgttaat--tcctttgcgcaaacccctcttttgctttgaacccattaaaacaccattttgtgtaattttagataaat----ctaccattcttcaaaatcctataaaaaaactt---ttccttttttgggtgggatgcccc-tggtcctttcctgtacagtcttctttgctgtagcacatgaataagcctaagcttgttggacaagagat-tgtcccCATTCTTTACCATTTGGCTTTTTTTAG-TCCTAGTATTTGAATTCCAGATGTCCTGCAAGAGCATAATCACCAGAGTGGGAACAAGTAAATGTTAACCATGATGGCAATATATTGTGGAATTTTTGTGGTTGGATTGAAAAAGTATGGAATGTTGGTGACCTTC--TGATGGTGAACCATGCCCCCTTCTTCAAAGTTTCATGACTTGTGTTTTGTTAGGAACTAGTTT---GAAAACCACTAGATGTTAGGAAGATT-TTTAAATTCTGATAACAGAATATGCATTCCCT---------GTTCTCCAAAATGATCTTTGAAATATCCTCCAATCATAGGAGGCAGAGATG-GATATGGGGAAGAATGAGGGAGAAAGGGCAGAAGAAGGATTGGGAAGACAAGTAGGGCTTCAGATCCTTCCTCTCTTACCTCGAAGTT------------GTGTGTGGCTTACAGCTGATCCCTGTCCCCTGCCA-GCATGTGTCCTCAGTTGTGTAAAAGGGGAAGAGTCTTCTGTTCCTGATGTTGTTCACAGGCCAGGTTTATCATGAAATCTGTAC-AATGCGGAAGACAAAAGAAATGGATATCATTCATTT-----------AAAAGAGAA- i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e nomLeu3.chr19 48074917 12435 - 81552678 M a score=158024.000000 s hg38.chr17_JH159146v1_alt 212267 66 + 278131 AGTTTAGTTGTGAGAGACAGAAAAA--CTAAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT s panTro4.chr17 66331249 66 - 82630442 AGTTTAGTTGTGAGAGACAGAAAAA--CTAAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48087355 66 - 81552678 AGTTTAGTTGGGAGAGACAGAAAAA--ACTAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT i nomLeu3.chr19 M 12435 C 0 s rheMac3.chr16 53194561 66 + 80904711 AGTTTAGTTGGGAGAGATAGAAAAA--CTAAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT i rheMac3.chr16 I 2 C 0 s macFas5.chr16 52759325 66 + 80997621 AGTTTAGTTGGGAGAGATAGAAAAA--CTAAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT i macFas5.chr16 I 2 C 0 s papAnu2.chr16 47762167 66 + 74645514 AGTTTAGTTGGGAGAGATAGAAAAA--CTAAATGATCGGGGGACTGGTGGAATTTGttg-----c----------------------------------------------------------------------------tagaattt i papAnu2.chr16 I 2 C 0 s chlSab2.chr16 10026004 66 - 75148670 AGTTTAGTTGGGAGAGATAGAAAAA--CTAAATGATCAGGGGACTGGTGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAACTT i chlSab2.chr16 I 2 C 0 s calJac3.chr5 112910951 66 + 159171411 AGTTTAGTTGTGAAAGACAGCAAAA--CTAAATGATTAGGGTACTTAGGGAATTTGTTG-----C----------------------------------------------------------------------------TAGAATTT i calJac3.chr5 I 2 C 0 s mm10.chr11 99617295 140 + 122082543 GGTCAAATTTCAAAATTCAGAAAAG--C--AATGGTTAGGGAACTCAGTGAATTTGTTT-----CTGTAGCATGTATATTTAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAATGTACATGTATATATCACAGATTATAAAATTA i mm10.chr11 I 2 C 0 s canFam3.chr9 39455234 65 - 61074082 --------TGTTTTAGATAGAAAAATTCTAGATGATTCGGGAGTGGGTGGGATTTTTTTTCCCCC----------------------------------------------------------------------------TGGAATTT i canFam3.chr9 C 0 I 158 e ponAbe2.chr17 24857870 5010 - 73212453 I a score=59217.000000 s hg38.chr17_JH159146v1_alt 212333 33 + 278131 TTTTAAA----------------AATTTCATCTGAGTTT-------TTTAGATATT s panTro4.chr17 66331315 32 - 82630442 TTTTAAA----------------AATTTCATCTGAG-TT-------TTTAGATATT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48087421 33 - 81552678 TTTTTTA----------------AATTTCATCAGAGTTT-------TTTAGATATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53194627 33 + 80904711 TTTTAAA----------------AAATTCATCTGAGTTT-------TTTAGATATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52759391 33 + 80997621 TTTTAAA----------------AAATTCATCTGAGTTT-------TTTAGATATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47762233 33 + 74645514 tttaaaa----------------agattcgtCTGAGTTT-------TTTAGATATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10026070 33 - 75148670 TTTAAAA----------------AAATTCATCTGAGTTT-------TTTAGATATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112911017 33 + 159171411 CAAAAAG----------------AATCTCATCTGAGTTT-------TCTAGATATT i calJac3.chr5 C 0 C 0 s mm10.chr11 99617435 56 + 122082543 TATATAAACAATCTATCAACCATACATCCAACTAATCTTTCTTAAGTTTAAATATT i mm10.chr11 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e canFam3.chr9 39455299 158 - 61074082 I a score=396577.000000 s hg38.chr17_JH159146v1_alt 212366 139 + 278131 CATTTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGAGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGAAGGTTCAATGTGAAAGAAAGAGTCGAACCATCAGATACTTACATG-TTGCTCAATCCTTCTTTT s panTro4.chr17 66331347 139 - 82630442 CATTTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGAGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGAAGATTCAATGTGAAAGAAAGAGTCGAACCATCAGATACTTACATG-TTGCTCAATCCTTCTTTT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48087454 135 - 81552678 CATTTGCCTAAAG-TCAGGGACGG-----CAAAGAAATCTTTTGAGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGATGGTTCAATGT----GAAAGAGCCTAACCATCAGATACTTACATT-TTGCTCAATCCTTTTTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53194660 139 + 80904711 CATCTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGGGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGATGGTTCAATGTGAAAGAAAGAGTCTAACCATCAGATACTTACAGT-TTGCTCAGTCCTTCTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52759424 139 + 80997621 CATCTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGGGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGATGGTTCAATGTGAAAGAAAGAGTCTAACCATCAGATACTTACAGT-TTGCTCAGTCCTTCTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47762266 139 + 74645514 CATCTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGGGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGATGGTTCAATGTGAAAGAAAGAGTCTAACCATCAGATACTTACATT-TTGCTCAGTCCTTCTTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10026103 135 - 75148670 CATCTGCCTAAAG-TCAGGGAAGG-----CAAAGTAATCTTTTGGGGTCTAT--TACAGCTTTGAGTTGTTTAATTCCCTTGGATGGTTCAATGTGAAAGAAAGAGTCTAACCATCAGA----TACATT-TTGCTCAGTCCTTCTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112911050 141 + 159171411 CATCTGCCTAATG-TCAAGGAAGG-----CAAAGTAATCTTTTGGGGTCTATTATACAGCTTTGAGTTGTTTAATTACCTTGGATGGTTCAATGTGAAAGGAAGAGTCTAACCATTAGATACCGATATT-TTGCTCAGTCCTTCTTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99617491 131 + 122082543 CATCGGCCTGAAG-TCAGGAAAAT-----TCAACCAGTCTTTTGGAATCTCA--TATTGCTTTTAGATTTTAAATTCCCTTGAATGGGCAGGTACAAGAGAAAG------GCTTTCAGATAC--ACATA-GTGCATAGTATTGCTCTT i mm10.chr11 C 0 I 1872 s canFam3.chr9 39455457 141 - 61074082 CATTTGCCTGAAGCCCAGGGAAGACTAACCCAAGTAATCTTTCAGAGTTTCT--TACAG-TTTGAGTTGTTTAATTCCTTTGGGTGGTTCAGAGTAGAAAGAAAAGT----CCATCAGATGCATGTATTATTTCCCAGCTCTCTTTGT i canFam3.chr9 I 158 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I a score=186341.000000 s hg38.chr17_JH159146v1_alt 212505 67 + 278131 ACCTGATGCTGCACTCCTATTCATAAATCCTATAATCTAGGACTCATTCCTGTGGACTTGTAGAATG s panTro4.chr17 66331486 67 - 82630442 ACCTGATGCTGCACTCCTATTCATAAATCCTATAATCTAGGACTCATTCCTGTGGACTTGTAAAATG i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48087589 67 - 81552678 ACCTGATGCTGCACTCCTATTCATAAATTCTGTAATCTAGGACTCATTCCTGTGGACTTGTAGAATG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53194799 67 + 80904711 TTCCGATGCTGCACTCCTATTCATAAATCCTGTAATCTCGGACTCATTCCTGTGGACTTGTAGAATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52759563 67 + 80997621 TTCCGATGCTGCACTCCTATTCATAAATCCTGTAATCTCGGACTCATTCCTGTGGACTTGTAGAATG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47762405 67 + 74645514 TTCCGATGCTGCACTCCTATTCATAAATCCTGTAATCTCGGACTCATTCCTGTGGACTTgtagaatg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10026238 67 - 75148670 TTCCAATGCTACACTCCTATTCATAAATCCTGTAATCTCGGACTCACTCCTGTGGACTTGTAGAATG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112911191 67 + 159171411 TCCTGATGCTGTACTCCTATTCATAAATCCTGTAATCTAGGACTCACTCCTGTGGACTTGTAGAATG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39455598 67 - 61074082 TCCCGACACTAAACCCTTATTCATAAATCTTGTAACCTAGGGCTCTTTCCTATGGATTAGCATAGCA i canFam3.chr9 C 0 I 226 e ponAbe2.chr17 24857870 5010 - 73212453 I e mm10.chr11 99617622 1872 + 122082543 I a score=1226740.000000 s hg38.chr17_JH159146v1_alt 212572 496 + 278131 AATTTTTAAAGATTATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGG-----------TTTTTTTTTTTGCCTTCTTCATTATATT----------------------------TATTAGAAAATCTATTCCTACTGGTAGATGTAGACTATCCTG--AAAA--AAAATTACAATT--------TAAGTTTGGTTAGTAAAGCCCTCCCCTGAATTTGTTCCCATTCCCAGTGAGTTGATATGTAGTAGATAGCACATCTTTTGAGCCTGTTCGATACAGTGATGTCCAAATGCTCCACAAGGAATATAAATGAATGttactgggcatttaactatgtgcca-ggcatcttgcatacataaaaagttataattgttatttaacttccctagcaatctacattggtaaatgttgctt---ttcccattttgcggatgagaaaactcgagagtcagagagg----ttaagttacACTA---ATGCCAAAA-TTTTTTCTTTAAATAA-TTATCTACCTTTTAAAATTCTTGTGGTAAAGACAATTTCCT s panTro4.chr17 66331553 501 - 82630442 AATTTTTAAAGATTATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGG-------TTTTTTTTTTTTTTTGCCTTCTTCATTATATT----------------------------TATTAGAAAATCTATTCCTAATGGTAGATGTGGACTATCCTG-AAAAA--AAAATTACAATT--------TAAGTTTGGTTAGTAAAGCCCTCCCCTGAATTTGTTCCCATTCCCAATGAGTTGATATGCAGTAGATAGCACATCTTTTGAGCCTGTTCGATACAGTGATGTCCAAATGCACCACAAGGAATATAAATGAATGttactgggcatttaactatgtgcca-ggcatcttgcatacataaaaagttataattgttatttaacttccctgtcaatctacattggtaaatgttgctt---ttcccattttgcggatgagaaaactcgagagtcagagagg----ttaagttacACTA---ATGCCAAAA-TTTTTGCCTTAAATAA-TTATCTACCTTTTAAAATTCTTGTGGTAAAGACAATTTCCT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48087656 510 - 81552678 AATTTTTAAAGATCATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGGtttg--ttttttttttttttttGCCTTCTTCATTATATT----------------------------TATTAGAAAATCTATTCCTGCCAGTAGATGTGGACTATCCTG-AAAAAATAAAATTACAATTTTTTTTGGTTAATTTGGTTAGTAAAGCCCTCCCCTGAATTTGTTCCCATTCCCAATGAGTTAATATGTAGTAGATAGCACATC-TTTGAGCCTGTTCGATAGAGTGATGTTCAAATGCACCACAAGGAATATAAATGAATGGtactgggcgtttaactatgtgcca-ggcatcttgcatacataaaaagttataaaagttatttaacttccccagcaatctacattggtaaatgttgctt---ttcccattttgcagatgagaaaactcaagagtcagagagg----ttaagttacACTA---ATGCCAAAA-TTTTTGCTTTAAATAA------TACCTTCTAAAATTCTTGTGGTAAAGACAATTTCCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53194866 500 + 80904711 AATTTTTAAAGATCATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGG---G--TTTTTTTTTTTTTTTTGCCTTCTTCATTATATT----------------------------TATTAAAAAATCTATTGCTGCCAGTAGAAGTGGACTATCCTG--AAAA--AAAATTACAATT--------TAAGTGTGATTAGTAAAGCCTTCCCCCGAATTTGTTCCCATTCTCAATGATTTGGTATGTAGTAGATAGCATGTCTTTTGAGCCTGTTCAATACAGTCATGTCCAAATGCACCAC-AGGAATATAAATGAATGGtattgggcatttaactatgtgccagggcatcttgcagtcataaaaagttataaaagttatttaactttcccaataatctacgttggtaaatgttgctt---ttcccattttgcggacgggataact--agagtcagagagg----ttaagttacACCA---ATGCCGAAA-TTTTTGCTTTAAATAA-ATACCTACCTTTTAAAATTCTTGTGGTAAAGACAATTTCCT i rheMac3.chr16 C 0 I 5 s macFas5.chr16 52759630 500 + 80997621 AATTTTTAAAGATCATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGG---G--TTTTTTTTTTTTTTTTGCCTTCTTCATTATATT----------------------------TATTAAAAAATCTATTGCTGCCAGTAGAAGTGGACTATCCTG--AAAA--AAAATTACAATT--------TAAGTGTGATTAGTAAAGCCTTCCCCCGAATTTGTTCCCATTCTCAATGATTTGGTATGTAGTAGATAGCATGTCTTTTGAGCCTGTTCAATACAGTCATGTCCAAATGCACCAC-AGGAATATAAATGAATGGtattgggcatttaactatgtgccagggcatcttgcagtcataaaaagttataaaagttatttaactttcccaataatctacgttggtaaatgttgctt---ttcccattttgcggacgggataact--agagtcagagagg----ttaagttacACCA---ATGCCGAAA-TTTTTGCTTTAAATAA-ATACCTACCTTTTAAAATTCTTGTGGTAAAGACAATTTCCT i macFas5.chr16 C 0 I 5 s papAnu2.chr16 47762472 502 + 74645514 aatttttaaagatcattttCATTCTGAGACAGCCTTAATCTGATGCCAAgttgttgtggg---gttttttttttttttttttgccttcttcattatatt----------------------------tattagaaaatcTATTGCTGCCAGTAGAAGTGGACTatcctg--aaaa--aaaattacaatt--------taagTGTGATTAGTAAAGCCTTCCCCCGAATTTGTTCCCATTCTCAATGATTTGGTATGTAGTAGATAGCACGTCTTTTGAGCCTGTTCAATACAGTCATGTCCAAATGCACCAC-AGGAATATAAATGAATGGTATTGGGCATTTAACTATGTGCTAGGGCATCTTGCAGtcataaaaagttataaaagttatttaactttccCAATAATCTACGTTGGTAAATGTTGCTT---TTCCCATTTTGCGGATGGGATAACT--Agagtcagagagg----ttaagttacaCCA---ATGCCgaaa-tttttgctttaaataa-atacctaccttttaaaattcttgtgGTAAAGacaatttcct i papAnu2.chr16 C 0 I 333 s chlSab2.chr16 10026305 499 - 75148670 AATTTTTAAAGATCATTTTCATTCTGAGACAGCCTTAATCTGATGCCAAGTTGTTGTGGG---T-----TTTTTTTTTTTTTGCCTTCTTCATTATATT----------------------------TTTTAGAAAATCTATTGCTGCCATTAGAAGTGGACTATCCTGAAAAAA--AAAATTACAATT--------TAAGTGTGATTAGTAAAGCCTTCCCCCGAATTTGTTCCCATTCTCAATGATTTGGTATGTAGTAGATAGCACATCTTTTGAGCCTGTTCAATACAGTCATGTCCAAATGCACCAC-AGGAATATAAATGAATGGtactgggcatttaactatgtgccagggcatcttgcagtcataaaaagttataaaagttatttaactttcccaacaatctacgttggtaaacgttgctt---ttcccactttgcggacaggaaaact--agagtcagagagg----ttaagttacACCA---ATGCTGAAA-TTTTTGCTTTAAATAA-ATACCTACCTTTTAAAATTCTCGTGGTAAAGACAATTTCCT i chlSab2.chr16 C 0 I 5 s calJac3.chr5 112911258 503 + 159171411 AATTTTTAAAGATCATTTTCATTCTGAGACAGCCTTAATCTGAAGCCAAGTTGTTCTGGT---G--------TGTTATTTTTGCCTTCTTTATTATACT----------------------------TATTAGAAAATCTATTTCTACCAATAGATATGGACTATCCTG---AAA--AAAACTGCTGTT--------TAAGTGTGCTTAGTAAAACCCTCCCCCGAATTTGTTCTCATTCTCAATGAGTTGGTATGTAGTAGACAGCACATCTTTTGAGCCTGTTCGATACAGTGATGTTCAAACACACCACAAGGAATATAAATGAATGGtactggacacttaactgtgtgcca-ggcatcttgcatccatgaaaaattgtaaaagtgatttaacttccccagcaatctacattggtaaatgtcacttaccatcccattttgaaaatgagaaaaccagagagtcagagaggttaattaagttacACTA---GTGATGAAATTTTTTGCTTTAAATAA-ATATCTACCTTTTAAAATTCTTGTGGTAAGGACAATTTTCT i calJac3.chr5 C 0 I 5 s canFam3.chr9 39455891 481 - 61074082 AACTTTTAAAGGACACTTTCAGTCTGAGTTGGCCTCAATATGATG----------ATGAA---------------TTTTTTTTCCTCCTTTCTTATACTTAGGAAATCTTAGGAATATGCTTTGTTATATTAGGAAATCTGTTTCTGCCAGTGGATGTGGACTATCTTG--AAAA--AA------------------CAA-----------AAAGCCTTCCCCTCAGCCTTCTCCCATTCTCGGTGACATAATATGTAATGAATAGAACATCTTTTGAGCCCCTTTGATACAGTGATGTTCAAATGTGCAGCAAGGAATATCAGTGAATGGtactgggtgaat-actgtgtgcca-ggcactttacatacataag-----------gtcatttaactttcccagcaatctacattggtaagtattaact---ttcccatttggcaaatgaggaaacctgaatgtcaaagaag----ttaagtTATGCTAATGATGCTGAAG-ATTCTGTTTTAAGTAAAATATTTACCTTTTATAATTCTTGTAAAGAAGATAATTACTT i canFam3.chr9 I 226 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e mm10.chr11 99617622 1872 + 122082543 I a score=1721318.000000 s hg38.chr17_JH159146v1_alt 213068 672 + 278131 -TTTATTTTG-ACAACTAAACAAACAGAAATTAAGTACCGGCTACGTATTAAACTTTGAGCTCAGTATTGGAAGCC---AAAAACAAACTGTGGTCCCCTCCTTGGAGGC--AAAAAAA--CATATAATCTCAATACAATGCCTTATGGGGAGGGAGGTAA---------GC-TATTGGAACTTGCTGAGAGCTCCTAACC--------------TGTAtgtgtgtgtgtgtgtgtgtgtgt------------------------gtgtgtATGCATTTGCACATGTGTTTGTGTGATACAggggttgggacaggactactggagaagactgaattgaatcttggaaatgaatcagagttaagtaggtgatgaaggtgaagagaaagagtgtgtaaaagaa------cagataagtgaaagaacatgaggaaaagcgaaacatttggaactgcaa---atgt-ttaataactataaggtcagtgttgcttgaagtgaatcttagtggggagcagtgagacatggatctatagagatgggcaaaggacagGCAGCAGACCACCTGATGTGCACACACTTCCTAGCCACATGGGTAATCTGAGGACTGGCCTAGCTCTCCTGTAACATCTTCAAATACCAAATACTTGTACCAGGAATCCTAGTGCCTGTCTCTGTTCCTCTTCTGTCTTTCTCATCATCTCCATCATCTTCCTCTTCACTCTTCCTCCTATTCATTGCC s panTro4.chr17 66332054 680 - 82630442 -TTTATTTTG-ACAACTAAACAAACAGAAATTAAGTACTGGCTACGTATTAAACGTTGAGCTCAGTATTGGAAGCC---AAAAACAAACTGTGGTCCCCTCCTTGGAGGC--AAAAAAA--CATATAATCTCAATACAATGCCTTATGGGGAGGGAGGTAA---------GC-TATTGGAACTTGCTGAGAGCTCCTAACC----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------------------------gtgtgtatgcatttgcacatgtgtttgtgtgATACAggggttgggacaggactactggagaagactcaattgaatcttggaaatgaatcagagttaagtaggtgatgacggtgaagag--agagtgtgtaaaagaa------cagataagtgaaagaacatgaggaaaagcaaaacatttggaactgcaa---atgt-ttaataactataaggtcagtgttgcttgaagtgaatcttagtggggagcagtgagacatggatctgtagagatgggcaaaggacagGCAGCAGACCACCTGATGTGCACACACTTCCTAGCCACGTGGGTAATCTGAGGACTAGCCTAGCTCTCCTGTAACATCTTCAAATACCAAATACTTGTACCAGGAATCCTAGTGCCTGTCTCTGttcctcttctgtctttctcatcatctccatcatcttcctcttcactcttcctcctattcattgcc i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48088166 701 - 81552678 -TGTATTTTG-ACAACTAAACAAACAGAAATTAAGTACCAGCTACCTATTAAACGTTGGGCTCAGTATTGGAAGCC---AAAAATAAACTGTGGTCCCTTCCTTGGAGGC--AAAAAAACCCATATAATCTCAATACAATGCCTTATGCGGAGGGAGGTAA---------GC-TGCTGGAACTTGTTGAGAGCTCCTAACC----TCtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgCGTGCGCGCACATGCGCACACAGGTGTGTATGCATTTGCACATGTATTTGTGTGATACAggggttgggacaggactactggagaagactgaattgaatcttggaaatgaatcagagttaagtaggtgatgaaggtgaagagaaagagtgtgcgaaagaa------cagataagtgaaagaacatgaggaaaggcaaaacatttggaactgcaa---atgt-ttaacaactacaaggtcagtgttgcttgaagtgaatcttagtggggagcggtgagacatggatctgtagagatgggcaaaggacagGCAGCAGACCACCTGATGTGCACACACTTCCTAGCCAAGTGGGTAATCCGAGGACTAGTCTAGCTCTCCTGTAACATCTT-------CAAATACTTGTACCAGGAATCCTAGTGCCTGTCTCTTTTCCTCTTCTGTCTTCCTTATCATTTCCATCATCTTCCTCTTCACTCTTCTTCCTATTCATTGCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53195371 687 + 80904711 -TTTATTTTG-ATAACTAAACAAGCGGAAATTAAATACTAGTTATGTATTAAATGTTGAGCTCAGTATTGGAAGCC----AAAATAAACTGTGATCCCCTCCTTGGAGGCCCAAAAAAA--CATATAATCTCAATACAATGCCTTATGGGGAGGGAGGTAA---------GC-TATTGGAACTTGCTGAGAACTCCTAACC----tgtgtgtgtgtgtgcacgtgtgcactcatgcatatgtgtgcaagcgcaca-------------gtgtatgcatttgcacatgtgtttgtgtgATACAgggtttgggataggactactggagaagactgaattgaatcttggaaatgactcagagttaagtaggtgatgaaggtgaagaaaaagagtgtgtgaaagaa------cagataagtgaaagaacatgaggaaaagcaaaacatttagaactgcaa---atgt-ttaataactataaggtcagtgttgcttgaagtgaatcttagtggggagcagtgagacatggatctgtagagatgggcaaaggacagGCAGCAGACTGCCTGATGTGCACACGCTTCCTAGCCACGTGGGTAATCTAAGGACTAGTCTAGCTCTCCTGTAACATCTT-------CAAATACTTGTACCGGGAATCCTAGTGcctctctcttttcctcttctgtcttcatcatcatctccatcatcttcctcttcgcttttcttcctattcattgcc i rheMac3.chr16 I 5 C 0 s macFas5.chr16 52760135 690 + 80997621 -TTTATTTTG-ATAACTAAACAAGCGGAAATTAAATACTAGTTATGTATTAAATGTTGAGCTCAGTATTGGAAGCC----AAAATAAACTGTGATCCCCTCCTTGGAGGCCCAAAAAAA--CATATAATCTCAATACAATGCCTTATGGGGAGGGAGGTAA---------GC-TATTGGAACTTGCTGAGAACTCCTAACC----TGTGTGTGTGTGTGCACGTGTGCACTCATGCATATGTGTGCAAGCGCACAG----------GTGTGTATGCATTTGCACATGTGTTTGTGTGATACAGGGTTTGGGATAGGACTACTGGAGAAGACTGAATTGAATCTTGGAAATGACTCAGAGTTAAGTAGGTGATGAAGGTGAAGAAAAAGAGTGTGTGAAAGAA------CAGATAAGTGAAAGAACATGAGGAAAAGCAAAACATTTAGAACTGCAA---ATGT-TTAATAACTATAAGGTCAGTGTTGCTTGAAGTGAATCTTAGTGGGGAGCAGTGAGACATGGATCTGTAGAGATGGGCAAAGGACAGGCAGCAGACTGCCTGATGTGCACACGCTTCCTAGCCACGTGGGTAATCTAAGGACTAGTCTAGCTCTCCTGTAACATCTT-------CAAATACTTGTACCGGGAATCCTAGTGCCtctctcttttcctcttctgtcttcatcatcatctccatcatcttcctcttcgcttttcttcctattcATTGCC i macFas5.chr16 I 5 C 0 s papAnu2.chr16 47763307 695 + 74645514 -tttattttg-ataacTAAACAAGCGGAAATTAAATACTAGTTATGTATTAAATGTTGAGCTCAGTATTGGAAGCC----AAAATAAACTGTGATCCCCTCCATGGAGGCCaaaaaaaa--CATATAATCTTAGTACAATGCCTTATGGGGAGGGAGGTAA---------GCTTATTGGAACTTGCTGAGAACTCctaacctgtgtgtgtgtgtgtgtgcacgtgtgcactCATGCGTATGTGTGCAAGCGCACAG----------GTGCGTATGCATTTGCACATGCGTTTGTGTGATACAGGGTTTGGGATAGGACTACTGGAGAAGACTGAATTGAATCTTGGAAATGACTCAGAGTTAAGTAGGTGATGAAGGTGAAGAGAAAGAGTGTGTGAAAGAA------CAGATAAGTGAAAGAACACGAGGAAAAGCAAAACATTCGGAACTGCAA---ATGT-TTAATAACTATAAGGTCAGTGTTGCTTGAAGTGAATCTTAGTGGGGAGCAGTGAGACATGGATCTGTAGAGATGGGCAAAGGACAGGCAGCAGACTGCCTGATGTGCGCACGCTTCCTAGCCACGTGGGTAATCTAAGGACTAGTCTAGCTCTCCTGTAACATCTT-------CAAATACTTGTACCGGGAATCCTAGtgcctctctcttttcctcttctgtcttcctcatcatctccatcatcttcctcttcgcttttcttcctATTCATTGCC i papAnu2.chr16 I 333 C 0 s chlSab2.chr16 10026809 690 - 75148670 -TTTATTTTG-ATAACTAAACAAGCAGAAATTAAACACTAGCTATGTATTAAATGTTGAGCTCAGTATTGGAAGCC----AAAATAAACTGTGATCCCCTCCTTGGAGGCCAAAAAAAA--CATATAATCTCAATACAATGCCTTATGGGGAGGGAGGTAA---------GC-TATTGGAACTTGCTGAGAGCTCCTAACC----TGTGTGTGTGTGTGCACGTGTGCACTCATGCATATGTGTGCAAGCGCACAG----------GTGTGTATGCATTTGCATATGTATTTGTGTGATACAgggtttgggacaggactactggagaagactgaattgaatcttggaaatgactcagagttaagtaggtgatgaaggtgaagagaaagagtgtgtgaaagaa------cagataagtgaaagaacatgaggaaaagcaaaacatttggaactgcaa---atgt-ttaataactataaggtcagtgttgcttgaagtgaatcttagtggggagcagtgagacatggatctgtagagatgggcaaaggacagGCAGCAGACTGCCTGATGTGCACACGCTTCCTAGCCATGTGGGTAATCTGAGGACTAGTCTAGCTCTCCTGTAACATCTT-------CAAATACTTGTACTGGGAATCCTAGTGCCTCTCTCTTTTCCTCTTCTGTCTTTCTCATCATCTCCATCATCTTCCTCTTCGCTTTTCTTCCTATTCATTGCC i chlSab2.chr16 I 5 C 0 s calJac3.chr5 112911766 661 + 159171411 -TTTATTTTG-ACAACGAAACAAATAGAAATTAAGTACCAGCTATGTATTAAACGCTGAGCTCAGTATTGGAAGCC----AAAATAAACTGTGGTCCCTTCCTTGGAGGC-AAAAAATA--TATATAATCTCAATACAATGACTTATGGGGAGGGAGTTAA---------GT-TATTGGAACTTGCTTGGAGCCCCTAACT----TCtgtgtgtgtgtg--------------tgtgtgtgtgtgtAAGTGCACAG----------GTGTGTATGCATTTGCACATGTGTTTGTGGGATACAGGGGTTGGAACATGACTACTGGAGAAGACTGAATTGAATCTTGGAAATGAATCAGAGTTAAGT-GGTGGTGAAGACGAAGAG--AAAGTGTGTGAAAGAA------CAGGTAAGTAAAAGAACACAAGGAAAAGCAAAACATTTGGAACTGCAA---A------------TATAAGGTCACTGTTGCTTGAATTGAATCTTAGTGGGGAGCAGTGAGACATGGATCTACAGAGATGGGCAAAGGACAGGCAGCAGACTGCCTGATGAACACATGCTTCCTAGCCATGTGGGTAATCTGAGGACTAGTCTAGCTGTCCTGTAACATCTT-------CAAATACTTGTACAAGGAATCCCAGTGCctccctcttttgctcttctgtcttccttgtcatctccatcatcttcctcttcactcttcttttcattcattgcc i calJac3.chr5 I 5 C 0 s canFam3.chr9 39456372 660 - 61074082 TCTTGTTTTGTTTGACATAACAAATAGAAATCAGGTACCAACCATATTCTAAACATTGAGCTCAGTACTGAAAGTCAGTAAAAATAAATTGTAGCCCCTTCATTGGAGAC--AGAGAAA--TAGATCATCTCAAGATAATGCCTTATGGGGAGGGAGGTAAACATAGGATGC-TATTGGCACATATTAGGGCCACCTAACC----TCTGTGTGTGTGCACATGCATGTAC------------------------------------ACATGCACACACATGTTCATGTGTTTATGTGATACAGGGGTTAGGATAGGACAATTACAGAAGGCTGAGCTGAATCTTTGAAATGACTCCGTGTTA--------------GTGGAGGGAAGTGGTAGGTGAAAAAAAGACTCCAGATAAATGAAAGAACATGATAAGAGCAAGGACATATGGGACTGCAGGGCATGTGCCAGTTACTGTGAG--CTGTGTTATTTGCAGTGA--CTTAGTGGGGCATGCTGAGATATGAACCTGGACATGTGGATGAAGGGAAGAGACCGAAGAACCCCATATG-ACAGATTTTCTACCCATGTAAGCAGTCAGAGGACTAGCCTGGCCATCCTGTACCACCTT-------CCAAGACTCATACCACTATTCTTAGCACCTCTCCCT-TTCCTCTCCTGTTTTCCTCATCTTCTCTGTCAT-------GTCATCCTTCTTCCTATTCCTTGTC i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e mm10.chr11 99617622 1872 + 122082543 I a score=1651928.000000 s hg38.chr17_JH159146v1_alt 213740 732 + 278131 TTGCCTCCCCTCTTCACTTTTTATTCATCCCTTATCTCTTACTTTTTGTCTCTCTTTTT------TTGTTGTCATTTTATTCCACCTATGACAAACTCAAGATACTG-TTTTTTTGCACATTCATTTACATTCACTTCTCTGCCAAACCGATTCTTCTGATTACAGTTTAGCAGGTGCTGTTTCATACTTATTATTATATTACAT--TTTTTTCTTCACTTTGGGTGTCTTCATTGTGGCTTGTCCTTGTGACTATTCTTGGAAGGCTTCCAGGCCATGCTTGTTAAGCCCTCAAGGAGCTCAAATCC---------------------------TGGTCTTCCTCTGAAATAATGGTCCTGAAATTCTAATg--------aattacatggaagtgatagaaaataaacagccttgggccccactcccagagattttgattcattaggtttggtttggggcctaagaatgtgcattttaataggcaattgcaagagattctattgtgtatgacgcatgggccacactttgaaaaATGCTACTCTAGGAACTGTGGTAAGAAGATGAGATGCGCTGTGCTGGTCA-GTTTACTACCAGTGGTCATTCTGGGCTTGGCATATGCtattcccacttcta---cccctcttcatgaacattgtctttccttttgtctattccattagaccataagcttcttggatacaaggcatgtagcttgttcatcactaatcaggcagcacctgtcaactggaggtcccttgataaacaattcctgaatga s panTro4.chr17 66332734 733 - 82630442 ttgcctcccctcttcactttttattcattccttatctcttactttttgtctctcttttt------ttGTTGTCATTTTATTCCACCTATGACAAACTCAAGATACTGTTTTTTTTGCACATTCATTTACATTCACTTCTCTGCCAAACCGATTCTTCTGATTACAGTTTAGCAGGTGCTGTTTCATACTTATTATTATATTACAT--TTTTTTCTTCACTTTGGGTGTCTTCATTGTGGCTTGTCCTGGTGACTATTCTTGGAAGGCTTCCAGGCCATGCTTGTTAAGCCCTCAAGGAGCTCAAATCC---------------------------TGGTCTTCCTCTGAAGTAATGGTCCTGAAATTCTAATg--------acttacatggaagtgatagaaaataaacagccttgggccccactcccagagattttgattcattaggtttggtttggggcctaagaatgtgcattttaataggtaattgcaagagattctattgtgtatgatgcatgggccacactttgaaaaATGCTACGCTAGGAACTGTGGTAAGAAGATGAGATGCGCTGTGCTGGTCA-GTTTACTACCAGTGGTCATTCTGGGCTTGGCATATGCtattcccacttcta---cccctcttcatgaacattgtctttccttttgtctattccattagaccataagcttcttggatacaaggcatgtagcttgttcatcactaatcaggcagcacctgtcaactggaggtcccttgataaacaattcctgaatga i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48088867 737 - 81552678 TTGCCTCTCCTCTTCACTTTTTATTCAGCCCTTATCTCTTATTTTTTGTCTCTCTTTTT-TGTTGTTGTTGTCATTTTATTCCACCTATGACAAACTCAAGATACTG-TTTTTTTGCATGTTCATTTACATTCATTTCTCTGCCAAATTGATTCTTCTGATTACAGTTTAGCAGGTGCTGTTTCATACTTATTATTATATTACCC--TTTTTTCTTAACTTTGGGTGTCTTCATTGTGGCTTGTCCTGGTGACTATTCTTGGAAGGCTTCCAGGCCATGCTTGTTAAGCCCTCAAGGAGCTCAAATCC---------------------------TGGTCTTCCTCTGAAATAATGGTCCTGAAATTCTAATg--------aattacatggaagtgatagaaaataaacagtcttaggccccactcccagagattttgattcattaggtttggtttggggcctaagaatgtgcattttaataggtaattgcaagagattctattatgtatgatgcatgggccacactttgaaaaacgctACTCTAGGAACTGTGGTAAGAAGATGAGATGTGCTGTGCTGGTCA-GTGTACTGCCAGTGGTCATTCTGGGCTTAGCATATGCtattcccacttcta---cccctcttcatgaacattgtggttccttttgactattccattagcccataagctccttggatacaaggcatgtagcttgttcatcactaatcaggcagcacctgtcaactggaggtcccttgataaacaattcctgaatga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53196058 721 + 80904711 ttgcctcccctcttcacttttacttaatcccttatctcttcctttttgcctctcttttt-tGTCATTGTTGTCATTTTATTCCACCTATGACAAGCTCAAGACACTG-TCTTTTTGC----------ACATTCATTTCTCTGCCAAATTGATTCTTCTGATTACAGTTTAGCAGGTGCTATTTCAGACTTATTACTATATTACCC--TTTTTTCTTAACTGTGGTTGTCTTCATTGTGGCTTGTTCCAGTGACTATTCTTGGAAGGCTACCAGGCCATGCTTGTTGAGGTCTCAAGGAGCTCAAATCC---------------------------TGGTGTTCCTCCGAAATAATGGTCCTGAAATTCTAAGg--------aattacatggaagtgatagaaaataagcagtcttgggccccattcccagagattttgattcattaggtttggtttggggcccaagaatgtgcatttta------aattgcaagagattctagtgtgtatgatgcatgggccacactttgaaaaacgctACTCTAGGAACTATGCTAAGAAGATGAGATGCACTGTGCTGGTCAGGTTTACTGCCAGTGGTCATTCTGGGCTTGGCATATGCtattcccactttta----ccctcttcatgaacattgcgtttccttttgtctattccattagcccataagctccttggatgcaaggcatgtagcttgttcatcactaatcaggctgcacctgtcaattggaggtcccttgataaacaattcttgaatga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52760825 721 + 80997621 TTGCCTCCCCTCTTCACTTTTATTTAATCCCTTATCTCTTCCTTTTTGTCTCTCTTTTT-TGTCATTGTTGTCATTTTATTCCACCTATGACAAGCTCAAGACACTG-TCTTTTTGC----------ACATTCATTTCTCTGCCAAATTGATTCTTCTGATTACAGTTTAGCAGGTGCTATTTCAGACTTATTACTATATTACCC--TTTTTTCTTAACTGTGGTTGTCTTCATTGTGGCTTGTTCCAGTGACTATTCTTGGAAGGCTACCAGGCCATGCTTGTTGAGGTCTCAAGGAGCTCAAATCC---------------------------TGGTCTTCCTCCGAAATAATGGTCCTGAAATTCTAAGg--------aattacatggaagtgatagaaaataagcagtcttgggccccattcccagagattttgattcattaggtttggtttggggcccaagaatgtgcatttta------aattgcaagagattctagtgtgtatgatgcatgggccacactttgaaaaacgctACTCTAGGAACTATGCTAAGAAGATGAGATGCACTGTGCTGGTCAGGTTTACTGCCAGTGGTCATTCTGGGCTTGGCATATGCTATTCCCACTTTTA----CCCTCTTCATGAACATTGCGTTTCCTtttgtctattccattagcccataagctccttggatgcaaggcatgtagcttgttcatcactaatcaggctgcacctgtcaattggaggtcccttgataaacaattcttgaatga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47764002 721 + 74645514 TTGCCTCCCCTCTTCActtttatttaatcccttatctcttcctttttgtctctcttttt-tgtcattgttgtcattttattCCACCTATGACAAGCTCAAGACACTG-tctttttgc----------acattcatttctCTGCCAGATTGATTCTTCTGATTACAGTTTAGCAGGTGCTATTTCAGACTTATTACTATATTACCC--TTTTTTCTTAACTGTGGTTGTCTTCATTGTGGCTTGTTCCAGTGACTATTCTTGGAAGGCTACCAGGCCATGCTTGTTGAGGTCTCAAGGAGCTCAAATCC---------------------------TGGTCTTCCTCCGAAATAATGGTCCTGAAATTCTAAGG--------AATTACATGGaagtgacagaaaataaacagtCTTGGGCCCCAttcccagagattttgattcaTTAGGTTTGGTTTGGGGCccaagaatgtgcatttta------aattgCAAGAGATTCTAGTGTGTATGATGCATGGGCCACACTTTGAAAAACGCTACTCTAGGAACTATGCTAAGAAGATGAGATGCACTGTGCTGGTCAGGTTTACTGCCAGTGGTCATTCTGGGCTTGGCATATGCTATTCCCACTTTTA----CCCTCTTCATGAACATTGCGTTTCCTTTTGTCTATTCCATTAGCCCATAAGCTCCTTGGATGCAAGGCATGTAGCTTGTTCATCACTAATCAGGCTGCACCTGTCAATTGGAGGTCCCTTGATAAACAATTCTTGAATGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10027499 750 - 75148670 TTGCCTCCCCTCTTCACTTTTATTTAATCCCTTATCTCTTCCTTTTTGTCTCTCTTTTT-TGTCATTGTTGTCATTTTATTCCACCTATGACAAGCTCAAGACACTG-TCTTTTTGC----------ACATTCATTTCTCTGCCAGATTGATTCTTCTGATTACAGTTTAGCAGGTGCTATTTCAGACTTATTACTATATTACCCTTTTTTTTCTTAACTGTGGTTGTCTTCACTGTGGCTTGTTCCAGTGACTATGCTTGGAAGGCTACCAGGCCGTGCTTGTTGAGGTCTCAAGGAGCTCAAATCTTCCTCCGAAATAATGGTCCTGAAATAATGGTCTTCCTCCGAAATAATGGTCCTGAAATTCTAAGg--------aattacatggaagtgatagaaaataaacagtcttgggccccattcccagagattttgattcattaggtttggtttgggacccaagaatgtgcatttta------aattgcaagagattctagtgtgtatgaggcatgggcaacactttgaaaaacgctACTCTAGGAACTGTGCTAAGAAGATGAGATGCGCTGTGCTGGTCAGGTTTACTGCCAGTGGTCATTCTGGGCTTGGCATATGCTATTCCCACTTTTA----CCCTCTTCATGAACATTGCGTTTCCTtttgtctattccattagcccataagctccttggatgcaaggcatgtagcttgttcatcactaatcaggctgcacctgtcaattggaggtcccttgataaacaattcttgaatga i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112912427 748 + 159171411 ttgcctcccctcttcgctttttatttatccctcatctcttcctttttgtctctctttttttGTTGTTGTTGTCATTTTATTCCACCTATGACAAGCTAAAAATACTG-TCATTTTGCACATTCGGTTATGTTCATTTTTCTGCCAAATTGATTCTTCTGATTACAGTTTAGCAGGTGCTGTTTCAGATGTATTACTCTATTACCC--CTTTTTCTTAACTTTGGGTGTCTTCATTGCTGCTTGTTCTAGTGACTGTTCCTGGGAGGCTTCCAGGCCATGCTTGTTAAGCCCTCAAGAAGCTCAAATCC---------------------------TGGTCTTCCTCCAAAATaatggtcctgaaattctaatatgcaaaataattacatagaagtgatagaaaa-aaacagtcttgggccccactcccagatattttgattcattaggtttggtttggggcctaagaatgtgcatctaaataagttattacaagagagtctagtgtggatgatgcatgagccacactttgaaaaacgctACTCTAGGAACCATGGTAAGAAGATGAGATGCGATGTGCTGGTCA-GTTTACTGCCAGTGGCCATTCTGGGCTTGGCATATGCTATTCCCACTTCTTGTACCTCTCTTCATTACCACTGTACTTCCTtttgtctattccatcagaccataagatccttggatgcaaggcatgtagcttgttcatcgctaatcaggcagcatctgtcaattggaagtctcttgataaacagttcctgaatga i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e canFam3.chr9 39457032 0 - 61074082 C e mm10.chr11 99617622 1872 + 122082543 I a score=189198.000000 s hg38.chr17_JH159146v1_alt 214472 76 + 278131 ctgaatAGATGAGATTTCTATGGATAAGGTTTTGCTTAGGTTGAGCTTTGTTTCCCTTGTGCAGGTTCCAAAATCT s panTro4.chr17 66333467 76 - 82630442 ctgaatAGATGAGATTTCTATGGATAAGGTTTTGCTTAGGTTGAGCTTTGGTTCCCTTTTGCAGGTTCCAAAATCT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48089604 76 - 81552678 ctgaatGGATGAGATTTCTATGGATAAGGTTTTGCTTAGGTCGAGCTTTGGTTCCCTTGTGCAGTTTGCAAAATCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53196779 76 + 80904711 ctgaatGGATGAGATTTCCATGGATAAAGTTTTGCTTAGGTTGAGCTTTGGTTCCCTGGTGCAGGTTCCAAAATCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52761546 76 + 80997621 ctgaatGGATGAGATTTCCATGGATAAAGTTTTGCTTAGGTTGAGCTTTGGTTCCCTGGTGCAGGTTCCAAAATCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47764723 76 + 74645514 CTGAATGGATGAGATTTCCATGGATAAAGTTTTGCTTAGGTTGAGCTTTGGTTCCCTGGTGCAGGTTCCAAAATCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10028249 76 - 75148670 ctgaatGGATGAGATTTCCATCGATAAGGTTTTGCTTAGGTTGAGCTTTGGTTCCCTGGTGCAGGTTCCAAAATCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112913175 76 + 159171411 ctgaatGGATGGGATTTCTATGGATAAAGTTTTGCTTAGGTTGAGCTTTGGTTCCCTTGTGCAGATTCCAAAATCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99619494 64 + 122082543 CTAAGTAGATGAAA-------GGATA----TTTGAGACAAATGAAC-TCAGTTTCCTTGGGCAGAGTCTAGACTCC i mm10.chr11 I 1872 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I e canFam3.chr9 39457032 0 - 61074082 C a score=520821.000000 s hg38.chr17_JH159146v1_alt 214548 184 + 278131 TGCTTATCTGTGTACGCTAATAAACATGCACTAACGAACAAATCAGGGAGCAGGGCAGTCTGCTATGCCAGGAAAAATTAGTTTATTGACAAC-AGTGAGCAACACATTGCAAAAGATGATGGTGACAGTTTGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTTTGCAAAGTCCACCCCAGGA s panTro4.chr17 66333543 184 - 82630442 TGCTTATCTGTGTACGCTAATAAACATGTACTAACGAACAAATCAGGGAGCAGGGCAGTCTGCTATGCCAGGAAAAATTAGTTTATTGACAAC-AGTGAGCAACACATTGCAAAAGATGATGGTGATAGTTTGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTTTGCAAAGTCCACCCCAGGA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48089680 184 - 81552678 TGCTTATCTGTGTACACTAATAAACATGCACTAACAAACAAATCAGGGAGCAGGGCAGGTTGCTATGCCAGGAAAAATTAGTTTATTGTCAAC-AGTGAGCAACACATCGCAAAAGATGATGGTGACAGTTTGAGCAGTAAAAACCATCAGATTGTAGAATGTGTTTTCAAAGTCCATCCCAGGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53196855 183 + 80904711 TGCTTATCTGTGTGCACTAATAAACATGCACTAACAAATAAATCAGGGAGCAGGGCAGTTTGCTATGCCAGGAAAAATTAGTTTATTGACAAC-AGTGAGCAACACATTGCAAAAGATGATGGTGACAGTTTGAGCAGT-AAAACCATCAGATTGTAGAATGTGTTTGCAAAGTCCACCCCAGGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52761622 183 + 80997621 TGCTTATCTGTGTGCACTAATAAACATGCACTAACAAATAAATCAGGGAGCAGGGCAGTTTGCTATGCCAGGAAAAATTAGTTTATTGACAAC-AGTGAGCAACACATTGCAAAAGATGATGGTGACAGTTTGAGCAGT-AAAACCATCAGATTGTAGAATGTGTTTGCAAAGTCCACCCCAGGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47764799 179 + 74645514 TGCTTATCTGTGTGCACTAATAAACATGCACTAAC----AAATCAGGGAGCAGGGCAGTTTGCTATGCCAGGAAAAATTAGTTTATTGACAAC-AGTGAGCAACACATTGCAAAAGATGATGGTGACAGTTTGAGcagt-aaaaccatcagattgtaGAATGTGTTTGCAAAGTCCACCCCAGGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10028325 183 - 75148670 TGCTTATCTGTGTGCACTAATAAACATGCACTAACAAATAAATCAGGGATCAGGGCAGTTTGCTATACCAGGAAAAATTAGTTTATTGACAAC-AGCGAGCAACACATTGCAAAAGATGATGGTGACAGTTTGAGCACT-AAAACCATCAGATTGTAGAATGTGTTTGCAAAGTCCACCCCAGGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112913251 157 + 159171411 TGCTTATCTGTGTACACTAATAAACATACACTAATGAACAAATTAGGGAGCAGGACAGTTTGCTATGCCAGGAAAAATTAGTTTATTGGCA----------------------------ATGGTGACAGTTTAAGCAGCAAAAACCATCAGATTGTAGAATTTGCTTGCAAAGTCCACTCCAGGA i calJac3.chr5 C 0 I 299 s mm10.chr11 99619558 178 + 122082543 TGCTCATCAGCACACACTAAT-AACACATACTAATGAATGAAGCA-AGAGTGTGGCA-TTTGCTATGCCAGG-AAAATCATTTTATTGA-AAC-AGTGAACAACACATGGC-AGAGATACTGGTGAAGATTTGATCTGCCTGAATCAAAAGGGCTCAAAATGGGCTTGTCCAGTCCATTCTGGGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39457032 173 - 61074082 TGCTCAGCCATGTACACTAATAAACATGCACTGCTGAATGAATCAGAGAGCAGGGAAGTTTA------CAGGAAAAATTAATTTATTGAAAACAAGCAAACAGCACATTGCAAAAGGTGGCAGGGAGGGTTTGAGCTGC------CTTCGGAATTCAGGATGGGTTTGCAGAGTCCACTCTGAGG i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I a score=575452.000000 s hg38.chr17_JH159146v1_alt 214732 217 + 278131 ATTCTTAAAGGTCGATTTACTATCCATAATGACTAAG----GCTGATGTAGACACCTGAAAATGTGGGTGAGGGTGGTAATGGACGTCTGCTTACACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTTGTGAAAAAAAATCTATTTTTCTTTTAAC-------------------TTTTTAAAAACACCAGATAGATGTTTAGGCTTCAGTGTATTGCTCTGTGGGGGCAT s panTro4.chr17 66333727 216 - 82630442 ATTCTTAAAGGTCGATTTACTATCCATGATGACTAAG----GCTGATGCAGACCCCTGAAAATGTGGGTGAGGGTGGTAATGGACGTCTGCTTACACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTTGTG-AAAAAAATCTATTTTTCTTTTAAC-------------------TTTTTAAAAACACCAGATAGATGTTTAGGCTTCAGTGTATTGCTCTGTGGGGGCAT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48089864 217 - 81552678 ATTCTTAAGGGTCAATTTACTATCCATAATGACTAAG----GCTGATGTAGACACCTGAAAATGTGGGTGAGGTTGGTAATGGGCATCTGCTTACACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTTATGAAAAAATATCTATTCTTCTTTTAAT-------------------TTTTTAAAAACACCAGATAGATGTTTAGGCTTCAGTGTATTGCTCTGTGGGGGCAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53197038 216 + 80904711 ATTCTTAAAGGTCAATTTACTATCCATAATGACTAAG----GTTGATGTAGACACCTGAAAAGGTGGGTGAGGGTGGTAGTGGACATCTGCTTATACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTGGTGAAAAAATATCTATTTTTCTTTTGAC--------------------TTTTGAAAACACCAAATAGACGTTTAGGCTTCAGTGTATTGTTCTGTGGGGGCAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52761805 216 + 80997621 ATTCTTAAAGGTCAATTTACTATCCATAATGACTAAG----GTTGATGTAGACACCTGAAAAGGTGGGTGAGGGTGGTAGTGGACATCTGCTTATACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTGGTGAAAAGATATCTATTTTTCTTTTGAC--------------------TTTTGAAAACACCAAATAGACGTTTAGGCTTCAGTGTATTGCTCTGTGGGGGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47764978 216 + 74645514 ATTCTTAAAGGTCAATTTACTATCCATAATGACTAAG----GTTGATGTAGACACCTGAAAAGGTGGGTGAGGGTGGCAGTGGACATCTGCTTATACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--CTATTGTCACCTGgtgaaaaaatatctatttttcttttgac--------------------ttttgaaaacACCAAATAGACGTTTAGGCTTCAGTGTATTGCTCTGTGGGGGCAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10028508 216 - 75148670 ATTCTTAAAGGTCAGTTTACTATCCATAATGACTAAG----GTTGATGTAGACACCTGAAAAGGTGGGTGAGGGTGGTAGTGGACATCTGCTTATACCAGGCTGTATCCAGA-TG-------GTAAAAATCA--TTATTGTCACCTGGTGAAAAAATATCTATTTTTCTTTTAAC--------------------TTTTGAAAACACCAAATAGATGTTTAGGTTTCAGTATATTGCTCTGTGGGGGCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112913707 222 + 159171411 ATTCTTAAAGGTCAATTTACTATCCATGACGACTAAG----GCTGATGTAGACACCTG-AAATTTGGCTGAGCATGGTAATGAACATCTGCTTATATCAGGCTGTATCCAGA-TGGTAAGATGTAAAAATAA--CTATTGTCACCTTGTGAAAAAA-ATATGTTTTTCTTTTAAC-------------------TTTATTAAAACATCAAATCAATGTTTAGGCTCCAGTGTATTGTTCTGTGAGGACAG i calJac3.chr5 I 299 C 0 s mm10.chr11 99619736 217 + 122082543 ACTTCTGAAGGTC-ATTTACCATCCACAGCAAATGATGTCCGCTGATAGAGATGTTTGGGAATTTGGAATAAGGCAGGAATGGCCATCTCCTTATCTCACATGGTATTCAGGCTG-------GAGGATGTTAAGCTGTTGCCACCTTTGGGAGGAAAATA---TTTTCTTTCAAT-------------------TTTATTAAAAGCCCAAGTGAACA---AGCATGTAGAGGCATGTCCTGGTGGGGATG i mm10.chr11 C 0 I 1 s canFam3.chr9 39457205 234 - 61074082 ACTTCTGAAGAAAGATTTACCATCCATGGTGTTTTCT----GCTTATGGAGGCACTTGGTAATTTGGCTGAGGGTGGCAATGGATATCTGCTTG--------TGTATCCAAA-TGGTGGGATGTAAAAATGA--CTATTGTTGCTTTATG-AAAAATATCTATTTGTCTTTCCACTTTCTTTTTTTTTTTCCACTTTCTTAAAATGCAGAATAGGTGCTTAGGCTCCAGTGAGTTGCTCTTTGGAGATGG i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24857870 5010 - 73212453 I a score=521865.000000 s hg38.chr17_JH159146v1_alt 214949 117 + 278131 -TGGGGTCT---CAGCAG------------GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC s panTro4.chr17 66333943 115 - 82630442 -TGGGGTCT---CAACAG------------GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTC-GCTGGCCGCA-GGGGGCCGGCAGCAGGGGGACTGCACAAACACAGGCTGGCAGCAGGTGGTGGCCCAGC i panTro4.chr17 C 0 I 1184 s ponAbe2.chr17 24862880 117 - 73212453 -TGGGGTCT---CAGCAG------------GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC i ponAbe2.chr17 I 5010 C 0 s nomLeu3.chr19 48090081 117 - 81552678 -TGGGGTCT---CAGCAG------------GAGGAGGTCCTGCAGGTGGTGCTGCAAGGGGTCGGTTGGCCGCAGGGTGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53197254 117 + 80904711 -TGGGGTCT---CAGCAG------------GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52762021 117 + 80997621 -TGGGGTCT---CAGCAG------------GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47765194 117 + 74645514 -TGGGGTCT---CAGCAG------------GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10028724 117 - 75148670 -TGGGGTCT---CAGCAG------------GAGAAGGTCCTGCAGGTGGTGCTGCAAGGCGTCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACAGACACAGGCTGGCAGCAGGTGGTGGCCCAGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112913929 120 + 159171411 -TGGGGTCTCAGCAGCAG------------GGGGAGGTCCTGCAGGTGGTGCTGCAAGGGGCCGGCTGGCCGCAGGGGGGCCGGCAGCAGGGGGACTGCACTGACACAGGCTGGCAGCAGGTGGTGGTCCAGC i calJac3.chr5 C 0 C 0 s mm10.chr11 99619954 129 + 122082543 -CAGGAGCT---CAGCAGCAGGTGTTGCATGGGGAGGTCCTGCAGGTGGTGCGACAGGGAGCAGGCTGGCAGCAAGGGGGCCTGCAGCAGGGAGCCTGCACTGAGATGGGCTGGCAGCAGGTGGAGGCCCAGC i mm10.chr11 I 1 C 0 s canFam3.chr9 39457439 121 - 61074082 TGGGGGTTTCAGCAGCAG------------GGGGAGGTCCTGCAGGTGGTGCGGCAGGGGGCAGGCTGGCAGCAGGAGGGGCGGCAGCAGGGCGCCTGCACAGAGATGGGCTGGCAGCAGGTGGAGGCCCAGC i canFam3.chr9 C 0 C 0 a score=5133645.000000 s hg38.chr17_JH159146v1_alt 215066 1272 + 278131 AGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAGGACAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTATTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCTGGGAGCTGATGACCC---TTCAACATATGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAGTGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCAT-ACATATTCATGTACATACACCACAAATATTCGCTCATTTTCTTGTATTGTTTATCCTCACTAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAA-----TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCGGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATTGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGATAGGCTTGTGGTTTTTCATATGAGCAGGGACCACACGAA-ATGC-AGATCCCTGGC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGATTGTAAAACCCTCTTCAAGGATCCATTGCAA--TTATTATATTTGTAATTTGTTTGGAATTAGTCGTTGCATCTGTAGAGTCCGggaagggattgcggagaatatgtaggcc----tatgccctcactc-tacggctgaggtcct--gagagtgtaccaaggtcacacaatgaggtcaccatatga-ggtctgagatccaggtctcctcagtctgcagtAAGTAGCCCCTACTATGAGTTTTATGCTCATTGGATTCAGTAAACCATGGTCTT s panTro4.chr17 66335242 1272 - 82630442 AGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTAGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCTGGGAGCTGATGACGC---TTCAACGTATGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAGTGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCAT-ACATATTCATGTACATACACCACAAATATTCGCTCATTTTCTTGTATTGTTTAACCTCACTAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAA-----TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCGGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATTGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCGTGACTCACTTAAAGATAGGCTTGTGGTTTTTCATGTGAGCAGGGACCACACGAA-ATGC-GGATCCCTGGC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCGAAACTCAACTTCTACCTTGATTGTAAAACCCTCTTCAAGGATCCATTGCAA--TTATTATATTTGTAATTTGTTTGGAATTAGTCGTTGCATCTGTAGAGTCTGggaagggattgcggagaatatgtaggcc----tatgccctcactc-tacagctgaggtcct--gagagtgtaccaaggtcacacaatgaggtcaccatatga-ggtctgacatccaggtctcctcagtctgcagtaagtagcctctACTATGAGTTTTATGCTCATTGGATTCAGTAAACCATGGTCTT i panTro4.chr17 I 1184 C 0 s ponAbe2.chr17 24862997 1276 - 73212453 AGCAGGGCCTGCACACCACAGCCGTGCACGACGAGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GCCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAGTGCACTCCTCCCCCTCTGGGCCCTTTATATACCCTGGCTGGGAGCTGATGACCC---TTCAACACATGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAGTGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCAT-ACATATTCATGTACATACACCACAAATATTCGCTCATTTTATTGTATTGTTTATCCTCACCAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAACTAG-TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAACTGCATCATCCTAGTGTAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGATAGGCTTGTGGTTTTTCATGTAAGCAGGGACCACAAGAA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGATTGTAAAACCCTCTTCAAGGATCCATTGCAA--TTATTATATTTGTAATTTGTTTGGAATTAGTCTTTGCATCTGTAGAGTCTGggaagggattgtggagaataagtaggcc----tatgccctctctc-tacagctgaggtcct--gagagtgtaccaaggtcacacaatgaggtcaccatatga-ggtctgaggtccaggtctcctcagtctgcagtaagtagcctctACTATGAGTTTTATGCTCATTGGATTCAGTAAACCATGGTCTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48090198 1278 - 81552678 AGCAGGGCCTGCACACCACAGCCGTGCATGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTGACAGGGCGGCACACCGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCACCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGT-TGGGCTGTTGAGAGGAGCTGAGTGTTCTCAGGTGTGAATGTCCTTCTCCTGCTCTGGGCCCTTTATATACCCTGGCTGGTTGCTGGTGACCC---CTCGGCACATAATTA-TTTTCTTGTACATCTTCTGGCCAATTAAGTGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCAT-ACATATTCATGTACATACACCACAAATATTCGCTCATTTTCTTGTATTGTTTATCCTTACCAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCTTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAACTAG-TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATTGCATCATCCTAGTGCAGACCAGTAGTCGTCTGCTTCACAGATAGCTCCTTCCACGACTCACTTAAAGACAGGCTTGTGGTTTTTCATGTGAGCGGGGACCACACGCA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGATTGTAAGACCCTCTTCAATGATCCATTGCAA--TTATTATATTTGTAATTTGTTTGGAATTAGTCATTGCATCTGTAGAGTCTGggaagggattgtggagaatatgcaggcc----tatgccctcactc-tacagctgaggtcctgagagagtgtaccaaggtcacacaatgaggtcaccatatga-ggtctgaggtccaggtctcctcaatcttcagtaagtagcctctACTATGGGTTTTATGCTCATTGGAGTCAGTAAACCATGGTCTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53197371 1277 + 80904711 AGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGTAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGGTGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCCTTGTGTTGATGACCC---CTCGACACGTGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAATGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCATAACATATTCATGTACATACACCACAAATATTCACTCATTTTCTTGTGTTGTTTATCCTTACCAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAACTAT-TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATAGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGACAGGCTTGTGGTTTTTCATGTCAGCAGGGACCACACGAA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTAGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGACTGTAAAACCCTCTTCAAGAATTCATTGCAA--TTATTATCTTTGTAATTTATTTGGAATTAGTCATTGCATCTGTAGAGTCTGggaagggattgtggagaatatgtaggcc----tatgctctcactc-tacagctgaggtcct--gagagtgtaccaaggtcacacaacgaggtcactatatga-ggtctgaagtccaggtctcctcaatcttgagtgagtagcctctACTATGAGTTTTATGCTCATTGGGTTCAGTAAACCATGGTCTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52762138 1277 + 80997621 AGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGTAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAAGAGAAGGTGGAGCCGCAGCAGGAGCCAGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATGTCCTCCTCCCGCTCCGGGCCCTTTATATACCCTGGCCTTGTGTTGATGACCC---CTCGACACGTGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAATGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCATAACATATTCATGTACATACACCACAAATATTCACTCATTTTCTTGTGTTGTTTATCCTTACCAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACCCATAAGAGA-GAAAAGAATGTGTTTTCTAAACTAT-TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATAGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGACAGGCTTGTGGTTTTTCATGTCAGCAGGGACCACACGAA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTAGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGACTGTAAAACCCTCTTCAAGAATTCATTGCAA--TTATTATCTTTGTAATTTATTTGGAATTAGTCATTGCATCTGTAGAGTCTGggaagggattgtggagaatatgtaggcc----tatgccctcactc-tacagctgaggtcct--gagagtgtaccaaggtcacacaacgaggtcactatatga-ggtctgaagtccaggtctcctcaatcttgagtgagtagcctctACTATGAGTTTTATGCTCATTGGGTTCAGTAAACCATGGTCTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47765311 1277 + 74645514 AGCAGGGCCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGTAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAAGAGAAGGTGGAGCCGCAGCAggagccggtcatggtggtgtcTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCAGGTGTGAATATCCTCCTCCCGCTCTGGGCCCTTTATATACCCTGGCCTGGTGTTGATGACCC---TTCGACACGTGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAATGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCATAACATATTCATGTACATACACCACAAATATTCACTCATTTTCTTGTGTTGTTTATCCTTACCAAATTTAGACATTGGATTCACTTCTGAttaattttcctttgaaatattcCTAACCcataagaga-gaaaagaatgtgttttctaAACTAT-TTAGTGTCTAATCACTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGCTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATAGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGACAGGCTTGTGGTTTTTCATGTCAGCAGGGACCACACGAA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGACTGTAAAACCGTCTTCAAGGATCCATTGCAA--TTATTATCTTTGTAATTTATTTGGAATTAGTCATTGCATCTGTAGAGTCTGGGAAGGGATTGTGGAGAATACGTAGGCC----TATGCCCTCACTC-TACAGCTGAGGTCCT--GAGAGTGTACCAAGGTCACACAACGAGGTCACTATATGA-GGTCTGAAGTCCAGGTCTCCTCAATCTTGAGTAAGTAGCCTCTACTATGAGTTTTATGCTCATTGGGTTCAGTAAACCATGGTCTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10028841 1277 - 75148670 AGCAGGGTCTGCAGACCACAGCCGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGGAGCAGGGGTCGCAGCACACCGGGCGGCGGCAGGGCTCGCAGATGGGACGCGTGCAGCGGGGCACGCAGGTCACGGGGCGGCACACGGTGGTCTGGTAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGTAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCCCCGTAGCTCAGGGAGGAGAAGGTGGAGCCGCAGCAGGAGCCGGTCATGGTGGTGTCTGAGGCTGGTGTGGGG-TGGGCTGTTGAGAGGAGCTGGATGTTCTCGGGTGTGAATGTCCTCCTCCCGCTCCCCGCCCTTTATATACCCTGGCCTGGTGTTGATGACCC---CTCGACACGTGATCA-TTTTCTTGTGCATCTTCTGGCCAATTAAATGAAGATTTAGCATTGA-CTAATGGTA-TTTTGGTCACTCTTCACCTCATAACATATTCATGTACATATACCACAAATATTCACTTATTTTCTTGTGTTGTTTATCCTTACCAAATTTAGACATTGGATTCACTTCTGATTAATTTTCCTTTGAAATATTCCTAACACATAAGAGA-GAAAAGAATGTGTTTTCTAAACTAT-TTAGTGTCTAATCGCTCTGCCCTTTGGCGCTAAAATTAGCATGTTA-TTCCTTGTCTTCAAAGGTTCCCATCACCAGCACCCAAGCAGTGACTTGCCTTATTAATGCACATGGGCATGATGGTAGCAGGTTAATAGCATCATCCTAGTGCAGACCAGTAGTCATCTGCTTCACAGATAGCTCCTTCCATGACTCACTTAAAGACAGGCTTGTGGTTTTTCATGTCAGCAGGGACCACACGAA-ATGC-GGATCCCTGCC-CACTGGTGTGGTCACTCTCCCCTGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGATGTGTCATCATTCACCTGGAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGACTGTAAAACCCTATTCAAGAATCCATTGCAA--TTATTATCTTTGTAATTTATTTGGAATTAGTCATTGCATCTGTAGAGTCTGggaagggattgtggagaatacgtaggcc----tatgccctcactc-tacagctgaggtcct--gagagtgtaccaaggtcacacaacgaggtcactatataa-ggtctgaagtccaggtctcctcaatcttgagtaagtagcctctACTATGAGTTTTATGCTCACTGGGTTCAGTAAACCATGGTCTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112914049 1277 + 159171411 AGCAGGGCCTGCAGACCACAGAGGTGCACGACGTGGGGCAGCAGGTGATGGGGCGGCAGCAGCCTTCCTGCAGGCAGCAGGGGTCGCAGCACACTGGGCGGCGGCAGGGCTCGCAGATGGGGCGCGTGCAGCGGGACACGCAAGTCACTGGGCGGCACACGGTGGTCTGGCAGGTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTGCCCCGCAGCTCAGGGAGGAGAAGGTGGGTCCGCAGCAGGAGCCGTACATGGTGTTGTCTGAGGCTGGTGTGGGG-AGGGCTGTTGAGAGGAGCTGGTTGTTCTCAGGTGTGAATGTCCTCTTCCCCCTCTGGGCTCTTTATATACCCTGGCCAGGTGATGATGACCC---CTGGGCACACGGTCATTTTTCTTGTGCCTCTTCTGGCCAATTAAGTGAAGATTTAACGTTGA-CGACTGGTATTTTTGGTCACTCTTCACCTCAT-ACCTATTCATGTACATACACCACAAATATTCCTTCCTTGTCTTTTATTGTTTATCCTTACCAAA-TTAGACATTGGATTTAATTCCGACTAATTTTCCCTTGAAATATTCCTAACCCATAAAAAA-GAAAAGAATGTGTTTTCTAAACTAGATTAGTGTCTAATCACTTTGCCCTTCTGTGGTAAAATTACTATGTTATTTTCTTGTTTTCAAAGACTCTCATCAACACCACTCAAGCAATGACTTTCCTTATTAATGCACGTGGGCATGATGGTAGCAGGCTAATAGCACTACCCTAGTGCAGACCAGTAGTCACCTGCCTCACAGATAGCTCCTTCTATGACTCACTTGAAGGCAGGCTTGTGGTTTTTCATGGGAGCAGGGACCACACAGA-AGGC-AGATCCCTGCT-CACTGGTGTGGTCACTCTCCCCGGACTAGGACCTGGGCTTTCCTGCCTTGGTTTTGGTGTCTCGTCATTCACTTGAAATGCCCTCCTCATCCTTCCAATCCAAACTCAACTTCTACCTTGATTGTAAG--CCTCTTCAAGGATGTATTGCAA--CTATTATCTTTGTAATTTATTTGGAATTaattattgcatttgtagagtccgggaagggactgtggagaatatgtcagcc----tatgccctcactc-tacagctgaggtcct--gagagtttaccaaggtcacac-aTGAGGTCACCATCTGAGGGTCCGAGGTCAAGGTATCCTCAATCTTCAGTAAGTAGCCTATACTACGAGTTTTCTGCTTATAGGGTTCAGTGAACCATGGTCTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99620083 1262 + 122082543 AGCAAGGCCTGCAGACCACAGCTGTGCAAGAGGTGGGGCAGCAGGTGATGGGGCGACAGCAGCCCTGCTGCAGGCTGCAGGGGTCACAGCAGATGGGGCGGCGGCAGGGCTCACAGATGGGCCTGGTGCAGTGGGGCACACAGGTCACAGGGCGACACACTGTGGTCTGGCAGGACACTGGGCGGCAGCAGCAGGGGTCCCTGCAGCAGCAGGGCTGGCAGCAGCAGGGCTGGCAGCAG------------------------------------------CCTCCTCCACAGCTCTGGGAGGAGAA---GGATCCACAGCAGGAGCCTGTCATGGTGGTGTCTG-GGCTGGAGTGGGGCTGAGAAGTGAGGAGAGGTTGGGAGTTCTCAGGTGTGA-TGT-CTCCTCTGGATTGGGTCCCTTTATATACCTGGAC--AGTGCTGATGACCC---CCAGGCACATGATCA---CTCTTGTAAATGCTCTGGCTAATTAAGAGAAGAGTTAGCATTGA-CTAATGGTA-TTTTTGTCCC----CACTCCCT-ACATA-TCATGCATACACATCACAAATATCCCTTTATTTTCTTTTGTGGTTTATTCTTACTGACTCTAAACACGGGATTGAATTACGATGAGT------TTGGAATATTTCTAAGTCATCAAAGAGGAAAAGAATTTGTTTTCCAAACCAG-ATAAGATCTAACCACTCT-CTCCTTGTCTCTGACGTCATCATTTTG--------TCTTCAAAGCCTCCCCAGGTTGCCACCCAAGCAGTGACTTACCTTGTTAGTACACATGGACATGACAGCAGTAGATTAATACCACCACTATAAGCCTGACCATCCG-CATCTGCTTCCCAGAGAACTC---CCAGGATGCATTT-CTGGCAGGTTTGTGGTTTCACATCTGATGAAGGACCACACGGGCATTT-ATAGCCTGTCA-CACTGGCTTGATCACTCTCTCTGGCTGAGGATCAGGGCTTTCCAGTCCTGG--CTGTTGTTTTCATATTGACCTGGAATGCCCTTCTTGTCCTCAGAACCTGAACTCAACTTCCACGTTGATCATAAAACCTGCTTCCGAGATCCCTCAAGATTTTTTTATCTTTGGGATTTATTTAGGATTAGTCACTGCATCAGTAGACTCTGGGAAAGGATTGTGGAGAGTCTATGGGCCCACATATCCCTTCCCTCTTGCGGCTGAAGTTTT---AGGGTTTACTGCGGTCACACAGCAAGGGTGCAGTGTGA-GATCTGAGTTCTGAGTCCCCTTACTTATCAGTAAATTGTATCTGCCCTAAGGTCTATGCTTA--GCGCTCTGTAAACCATCATTTT i mm10.chr11 C 0 I 866 s canFam3.chr9 39457560 1276 - 61074082 AGCAGGGGCGGCAGACCACGGCAGTGCAGGACGTGGGGCAGCAGCTGATGGGGCGGCAGCAGCCCTCCTGCAGGGAGCAGGGGTCACAGCACACAGGGCGGCGGCAGGGCTCACAGATGGGGCGCGTGCAGCGGCAGGTGCAGGTCACGGGGCGGCACACAGTGGTCTGGCAGCTCACGGGGCGGCAGCAGCAGGGGTCGC---------------GGCAgcagcagggctggcagcaggagggctggcaggagggctggcagcaggagggctggcagCATTCTGTGCCACAGCCCTGGGAGGAGCAGATGGAACCACAACAGGAGCCAGACATGGTGATGTGTGGGGCTGTTTAGGTC-TGGACTGGTGAGAGGATTTGGGTGTTGTCAGGTGTGAATGTCTTTGTCCTGCTTTGGCCCCTTTATATACCCTGCCCAGGTGCTGATGACCCCCTCTGGATACATGATCA--TTTCTTA---ATCTTCTATCCAATTAAGTGAGGAGTTAGCATTGAGCAAATGATA-TTTTT-TAACTCTTTACCTTGT-ACACATCCATGCATACA-ACCACAAACATTCCTTTGTCTTC-TATATTGTTTATTCTAACCAAATCTACACATTGGATTCAATTCTGATGAATTTTTA-TTGAAATATTCCTAACTCATACAAGA-GAAAAGAATGTG-TTTCTAAACTAGGATAGTATCTAATCACTCTGACCTTTGGCTTTGAAGTCAGCATTTTA-TTCCTGGACTTCAAAGACTCACATAATTACCACCCAAACAGTGACTTGCCTTATTTACACCCATGCCCCTAATAGTAATAGGTTAATAGCAACACTCTCGTGCAGGCCAGTAGACTTCTGCTTCCCAGATGTCTCCTTCCACGACTCACTAAGAGGCAGATTTGTGGTTTT-CAGATGAGGCGGGACCACATGAT-ATCCTAGACTCCTGCCACCTTGGTTTAGTCACTTTTCCCC-AGTGGGGCCTGA-----------------TTGTTGTCTCCCCATTCATCTGGAATGCCCTCCTCTTCCTTCCAAACCAAACTCAACCTCTACCTAGACTGTAAAATTTTCATCAAGGATCTGTTGCAA--TTTTTATCTTTGTAATTTATTCAGGATTAAT-ATCACATGTGTAGATTTTAggaaaggactatagagaatatataggct----tatcccctcatct-tacagGAGACGTCAT--GTGGGTTCACCACAGTTACACAA---------------A-GG-----GGTCTAGGTCTCCTCACTCCTTAGTAAGCAGCCTCTACTATGAGCTTTATGTTTATCAGGTTCAGTAGACCATACTCTT i canFam3.chr9 C 0 C 0 a score=75015.000000 s hg38.chr17_JH159146v1_alt 216338 19 + 278131 TAGACAGGAAAGAAAACAT s panTro4.chr17 66336514 19 - 82630442 TAGACAGGAAAGAAAACAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24864273 19 - 73212453 TAGACAGGAAATAAAACAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48091476 19 - 81552678 TAGACAGGAAAGAAAACAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53198648 19 + 80904711 TAGACAGGAAAGAAAACAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52763415 19 + 80997621 TAGACAGGAAAGAAAACAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47766588 19 + 74645514 tagacaggaaagaaaacat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10030118 19 - 75148670 TAGACAGGAAAGAAAACAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112915326 19 + 159171411 TAGACAGGAAAGAAAACAT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39458836 19 - 61074082 CAGGCAGGAAAGAGAACAT i canFam3.chr9 C 0 I 723 e mm10.chr11 99621345 866 + 122082543 I a score=286812.000000 s hg38.chr17_JH159146v1_alt 216357 98 + 278131 ATATTAAAGtagaagcccagacttcatgccactatgcaatatatccatgtaacaatgctgcatttgaacctcttacatttatacatattaaaCACAGA s panTro4.chr17 66336533 98 - 82630442 ATATTAAAGtagaagcccagacttcatgccactatgcaatatatccatgtaacaatgctgcatttgaacctcttacatttatacatattaaaCATAGA i panTro4.chr17 C 0 I 1791 s ponAbe2.chr17 24864292 98 - 73212453 ATATTAAAGtagaagcccagacttcatgccactgtgcaatatatccatgtaacaatgctgcatttgaaccccttacatttataCATATTAAACACAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48091495 98 - 81552678 ATATTAAAGGAGaagcctagacttcatgccactatgcaatatatccgtgtaacaatgctgcatttgaaactcttacatttatacatattaaaCACAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53198667 98 + 80904711 ATATtaaattagaagcccagacttcaagccactatgcaatatatccatgtaacaatgctgcatttgaacctcttacatttatacatattaaaCACAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52763434 98 + 80997621 ATATtaaattagaagcccagacttcaagccactatgcaatatatccatgtaacaatgctgcatttgaacctcttacatttatacatattaaaCACAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47766607 98 + 74645514 atattaaattaGAAGCCCAGACTTCAagccactatgcaatatatccatgtaacaatgCTGCATTTGAACCTCTtacatttatacatattaaacacaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10030137 98 - 75148670 ATATtaaattagaagcccagacttcaagccactatgcaatatatccatgtaacaatgctgcatttgaacctcttacatttatacatattaaaCACACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112915345 91 + 159171411 GTATTAAAGtagaagtc-------catgccactctgcaatacatccatgtcacaatgctgcatttgtacctcttaaatttataTGTATTCAACaaaaa i calJac3.chr5 C 0 I 8 e canFam3.chr9 39458855 723 - 61074082 I e mm10.chr11 99621345 866 + 122082543 I a score=1552357.000000 s hg38.chr17_JH159146v1_alt 216455 534 + 278131 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGCAAGGTTAGAAGTGGTACTGGAAGAGAATTAGGGAAATGTTTTGCCCAGATGACACATtgtcatcctggacccccattgactccactaagtatgacaatgtgtctgagaggctagagaagggacctggagaaagctaacatgatgcagggtttattagtggaactt-acatacaa----gggtggtccagtggtggtatctggacaggagaactgctattatttgtaaaaagcatgcagttcacacagtattttca-ttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaatggatgaggtggggattcaaatgtccttcatagataaggagtggatctccaagttggccactcccagatccttagctcagaactccaagcatacattcttctttgattgtaggatcattctcagggtatgcttaagttaagttattgctgccagat-gtgtctgccatacCC s panTro4.chr17 66338422 534 - 82630442 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGCAAGGTTAGAAGTGGTACTGGAAGAGAATTAGGGAAATGTTTTGCCCAGATGACACATtgtcatcctggacgcccattgactccaataaggatgacaatgtgtctgagaggctagagaagggacctggagaaagctaacatgatgcagggtttattagtggaactt-acatacaa----gggtggtccagtggtggtatctggacaggagaactgctactatttgtaaaaagcatgcagttcacatagtattttca-ttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaatggatgaggtggggattcaaatgtccttcatagataaggagtggatctccaggttggccactcccagatccttagctcagaactccaagcatacattcttctttgattgtaggatcattctcagggtatgcttaagttaagttattgctgccagat-gtgtctgccataccc i panTro4.chr17 I 1791 C 0 s ponAbe2.chr17 24864390 534 - 73212453 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGCAGGGTTAGAAGTGGTATTGGAAGAGAATTAGGGAGATGTTTTGCCCAGATGACACATtgtcatcctggacccccattgactccaataaggatgacaatgtgtctgagaggctagagaagggacctggagaaggctaacatgacggaggttttattagtggaactt-acatacaa----gggtggtccagtggcagtatctggacaggagaactactactatttgtaaaaagcatgcagttcacatagtattttca-ttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaatggatgaggtggagattcaaacgtccttcagagttaaggagtggatctccaggttggccactcccagatccttagctcagaactccaagcctacattcttctttgattgtaggatcattctaagggtatgcttaaattaagttattgctgccagat-gtgtctgccataccc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48091593 533 - 81552678 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGCAAGGTTAGAAGTGGTATTTGAAGAGAATTAGGGAAATGTTTTGCCCAGATGACACATtgtcatcctggacccccattgactccagtaaggatgacaatgtgtccgagaggctagagaagggacctggagaaagctaacatgacacagggtttattag-ggaactt-acatacaa----gggtggtccagtggcggtatctggacaggagaaccgctattatttgtaaaaagcatgcagttcacatagtattttca-ttagaaccctccacctaaccacctccatttaatccaaaacaaaggacctcaatccccagtatgacctgtgttctaatggatgaggtggggattcaaacgtccttcatagataaggagtggatctccaggttggccactcccagatccttagctcagaactccatgtgtacattcttctttgattgtaggatcattctcagggtatgcttaagttaagttattgctgccaggt-gtgtctgccatacCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53198765 539 + 80904711 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGTAAAGTTAGAAGTGGTACTGGAAGGGAATTAGGGAAATGTTTTGCTCAGATGACAGATtgtcatcctgggcccccattgactccaataaggatgacaatgtgtccgagaggctagagaagggacctggagacagctaacatgacgtggggtttgttaggggaactt-acatacaagggtgggtggcccagtggtggtgtctgaacaggagaactgctaccatttgtaaaaagcacgcagttcacatagtattttcacttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaacggatgaggtagggattcaaacgtccttcatagataaggagtggatctccaggttggccactcccagatccttagctcagaactccaagcatacattcttctttgattgtagggtcattctcagagtatgcttaagttaagttattgctgcccggt-gtgtctgccataccc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52763532 539 + 80997621 TT-TAAAAAAATAAGTAATGAACTTTCCTTTCAGCAGTAAAGTTAGAAGTGGTACTGGAAGGGAATTAGGGAAATGTTTTGCTCAGATGACAGATtgtcatcctgggcccccattgactccaataaggatgacaatgtgtccgagaggctagagaagggacctggagacagctaacatgacgtggggtttgttaggggaactt-acatacaagggtgggtggcccagtggtggtgtctgaacaggagaactgctaccatttgtaaaaagcacgcagttcacatagtattttcacttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaacggatgaggtagggattcaaacgtccttcatagataaggagtggatctccaggttggccactcccagatccttagctcagaactccaagcatacattcttctttgattgtagggtcattctcagagtatgcttaagttaagttattgctgcccggt-gtgtctgccatacCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47766705 535 + 74645514 tt-taaaaaaataagtaatgaaCTTTCCTTTCAGCAGTAAAGTTAGAAGTGGTACTGGAAGAGAATTAGGGAAATGTTTTGCTCAGATGACAGATTGTCATCCTGGACCCCCATTGACTCCAATAAGGATGACAATGTGTCCGAGAGGCTAGAGAAGGGACCTGGAGACAGCTAACATGACGCGGGGTTTGTTAGGGGAACTT-ACATACAA----GGGCAGTCCAGTGGTGGTGTCTGGACAGGAGAACTGCTACCATTTGTAAAAAGCATGCAGTTCACATAGTATTTTCACTTAGAACCCTCCACCTAACAACCTCCATTTAATCCAAAACAAAGGGCCTCAATCCCCAGTATGACCTGTGTTCTAACGGATGAGGTAGGGATTCAAACGTCCTTCATAGATAAGGAGTGGATCTCCAGGTTGGCCCCTCCCAGATCCTTAGCTCAGAACTCCAAGCATACATTCTTCTTTGATTGTAGGGTCATTCTCAGAGTATGCTTAAGTTAAGTTATTGCTGCCAGGT-GTGTCTGCCATACCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10030235 536 - 75148670 TTAAAAAAAAATAAGTAATGAACTTTCTTTTCAGCAGTAAAGTTAGAAGTGGTACTGGAAGAGAATTAGGGAAGTGTTTTGCTCAGATGACAGATGgtcatcctggacccccattgactccaataaggatgacaatgtgtccgagaggctagagaagtgacctggagacagctaacatgacgcggggtttgttaggggaactt-acatacaa----gggtggtccagtggtggtgtctgcacaggagaactgctaccatttgtaaaaagcatgcagttcacatagtattttcacttagaaccctccacctaacaacctccatttaatccaaaacaaagggcctcaatccccagtatgacctgtgttctaacggatgaggtagggattcaaacgtccttcatagataaggagtggatctccaggttggccactcccagatccttagctcagaactccaagcatacattcttctttgattgtagggtcattctcagagtatgcttaagttaagtgattgctgccaggt-gtgtctgccatacCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112915444 503 + 159171411 tt-taa----------aatGAACTTTCATTTTAGCAGCAAGGTTAGAAATGGTGCTGGAAGAGAATTAGGGAAATGTTTTGCACAGATGACAAATtgtcgtcctggacccctattgactccagtaaggatggcaatgtatctgagaggctggagaagaggcctgaagacagctaacatgacacaggtttttttaggggaacttaacatacag---------------tggcagtggctggacaggtgaacggttaccatatttaaaaagcatgcagttcatatagcattttcacttagaaccctccaccgaacaatctccatttaatccgaaac-aaggacctcaatccccggtatgacctgtgttctaacct-tggtctggggagtcaaatgtccttcacagataacggctggatcttcaggttggccactccca-atccttag-tcag-actccaagcatacattcttctttgactttagg-tcattctca-agtattagtaagttg------tgctgccaggtaatgtctgccatacCC i calJac3.chr5 I 8 I 2524 e canFam3.chr9 39458855 723 - 61074082 I e mm10.chr11 99621345 866 + 122082543 I a score=3443200.000000 s hg38.chr17_JH159146v1_alt 216989 1454 + 278131 TccacctcagcatacccttgaatagcccttacattctaatcacaccattcttctgagatttccctggggctaggatatgcagaggagcattgcaaccagatgtttcagcagcaacataaactactacaacaaaaaagaataatgaatgtaacaacaattgtactgtatagaaagtttttccaagcactcaggagttgattaaaccATGTGGTTACAGGGTCATAAGATAGAGATTCTATAGCAGAAATCTGGGTATCTAGGGCCCACATGGCCTGtgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatgcacaggttctgccctgataagcggttaagatgtcctgggccatgcaattttgcaaagtaacacacctaatttgggcagtttcttcagtgagaagagtaatatcatggcagatatcattaaagactgcagccctatgttaagccagggcctcaacttgcAGCTGTATGTCTATTGTCACCACTTGGGTGGTGAGTGGTGGGGGGAGTGGGGGGGGGGAC--ATggcaaaagtggccaacgggtaaaaccacagggatgcatgcttccagcagtgcctggcttttacaatttcccagttagtaagaatggtgtctaaactgggcacgatgtatcccagcaaatgaggatgtccccaggtgcatctaccagtccagttatagggtaagtaaggccaactgtggatgccgcatgcccacagccatcctaaggggtgtggtaggcccccaGGTGGAGAGTCACTCTGTCGTCGCAGTCAAGTATCACTGGTTACCTGAAGAGATTGGTTTCATTGCTGTCATATTCCATGTCTATTACCTGAAGAAATAGATTACATTACACTGTGGGGGTAGCCATCCCATACTACTGGTTTTAGCTTGTGGCATGCTATTATCATGCCTTTTAATACATGTGGGTGCACAGCCCACAAGCTGTATCTATACTGCTGTTGTCCACCCTGGCCCATCATCTACAGAATACCCCACAGTGGGGGTGACATTAACCTGCTCCTATACTAGGTGGAAAATATGTTGTCTCATCTCTGATGGTGGGAAACTTATCACATGAAGTGTGGTTATTGCTAAAGGGAAATGGGTGAGGGTCATTATACCAAGTATAGAAATGGCTCCAGATACTGAGGTTAGCTGCTTGGATGCACCATGGCAGGCTGATGCTGGAGGAGAAGGGCAGCTCCCTGCAGATGCAACAGTCTGTTTTGTTTTGGGGAAAGGTCGCCATTTGCACCCAGTTGGTGAAGAGGTACACCACCTATGGGTGACAGGTGAGATACCTAGTGGGTAGAAGAATGGGCAAGTTggccgggcacagtggctcacgtctgtaatcccaacacttttggaggccaaggcgtgtggaacacctgaggtctggagttcgagaccagctgacc s panTro4.chr17 66338956 1453 - 82630442 tccacctcagcatacccttgaatagcccttacattctaatcacaccattcttctgagatttccctggggctaggatatgcagaggagcattgcaaccagatgtttcagcagcaacataaactactacaacaaaaaagaacaatgaatgtaacagcaattgtactgtatagaaagtttttccaagcactcaggagttgattaaaccATGTGGTTACAGGGTCATATGATAGAGATTCTATAGCAGAAATCTGGGTATCTAGGGCCCACATGGCCTGTGCTacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatgcacaggttctgccctgataagcggttaagatgtcctgggccatgcaattttgcaaagttacacacctaatttgggcagtttcttcagtgagaagagtaatatcatggcagatatcattaaagactgcagccctatgttaagccagggcctcaacttgcAGCTGTATGTCTATTGTCACCACTTGGGTGGTGAGTGGTGGAGGGCGGGGGGAGGGGGAC--ATggcaaaagtggccaactggtaaaaccactgggatgcatgcttccagcagtgcctggcttttacaatttcccaattagtaagaatggtgtctaaactgggcacgatgtatcccagcaaatgaggatgtccccaggtgcatctaccagtccaatgatagggtaagtaaggccaactgtggatgccgcatgcccacagccatcctaaggggtgtggtaggcccccaCGTGGAGAGTCACTCTGTCGTCGCAGTCAAGTATCACTGGTTACCTGAAGAGATTGGTTTCAttgctgtcatattccatgtctattacctgaagaaatagattacattacactgtgggggtagccatcacatattactggttttagcttgtggcatgctattatcatgccttttaatacatgtgggtgcacagcccacaagctgtatctatactgctgttgtccaccctggcccatcatctacagaataccccacagtaggggtgacattaacctgctcctatactaggtggaaaatatgttgtctcatctctgatggtgggaaacttatcacatgaagtgtggttattgctaaagggaaatgggtgagggtcattttaccaagtatagaaatggctccagatactgaggttagctgcttggatgcaccatggcaggctgatgctggaggagaagggcagctccctgcagatgcaacagtctgttttgttttggggaaaggttgccatttgcacccagttggtgaagaggtACACCACCTATGGGCGACAGGTGAGATACCTAGTGGGTAGAAGAATGGGCAAGTTggccgggcacagtggctcacgtctgtaatcccaacacttttggaggccaaggcgtgtggaacacctgaggtctggagttcgaga-cagctgacc i panTro4.chr17 C 0 I 398 s ponAbe2.chr17 24864924 1454 - 73212453 tccacctcagcatacccttgaattgcccttacattctaatcacaccattcttctgagatttccctggggccagggtttgcagaggagcattgcagccagatgtttcagcagcaatataaactactacaacaaaaaagaataatgaatgtaacaacaatcgtactgtataggaagtttttccaagcactcaggagttgattaaaccATGTGGTTACAGGGTCATAAGACAGAGATTCTATAGCAGAAATGTGGGTATCTAGGCCCCACATGGCCTGTgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatgcataggatctgccctgataagcggttaagatgtcctgggccatgcaattttgcaaagtaacaCACCTAATTTGGGCAGTTTCTTCAGTGAGAAGAGTAATATCATGGCAGGTATCATTAAAGACTGCAGCCCTATGTTAAGCCAGGGCCTCAACTTGCAGCTGTATGTCTATTGTCACCACTTGGGTGGTGAGTGGTGGGGGGCGGGGGGAGGGGGGC--GTggcaaaagtggccaatgggtaaaaccatcaggatgcacgcttccagcagtgcctggcttttacaacttcccagttagtaagaatggtgtctaaactgggcacgatgtatcccagcaaatgaggatgtccccaggtgcatctaccagtccaattatagggtaagtaaggccaactgtggatgccgcatgcccacagccatcctatggggtgtggtaggccctcacgtggagagtcactctgtcatcgcagtcacgtatcactggttacctgaagagattggtttcattgctgtcacattccatgtctattacctgaagaaatgggttacattacactgtgggggtagccatcccatattaccggttttagcttgtggcatgctattatcatgccttttaatacatgtgggtgcacagcccacaagctgtatctatactgctgttgtccaccctggcccatcatctacagaataccctacagtgggggtgacattaacctgctcctatactaggtggaaaatatgttgtctcatctctgatggtgggaaacttatcacatgaagtgtggttattgctaaagggaaatgggtgagggtcattataccaagtatagaaatggctccagatactgaggttagctgcttggatgcaccatggcaggctgatgctggaggagaagggcagctccctgcagacgcaacagtctgttttgttttggggaaaggtcaccatttgcacccagttggtgaagaggtACACCACCTATGGGCGACAGGTGAGATACCTCATGGGTAGAAGAAAGGGCAAGTCagccgggcacagtggctcacgcctgtaatcccaacacttttggaggtcaaggcgggtggaacacctgaggtctggagttcgagaccagctgacc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48092126 1449 - 81552678 TccacctcagcatacccttgaatagcccttacattctaatcacaccattcttctgagatttccctggggccagggtatgcagaggagcattgcaaccagatgtttcagcaacaatgcaaactactacaacaaaaaagaataatgaatgtaacaaaaatcgtactgtatagaaagtttttccaagtgctcaagagttgattaaaccatgtggctATAGGCTCATAAGATAGAGATTCTATAGCAGAAATATGGGTATCAAGGGCCCGCATGGCCTTtgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatacacagattctgccctgataagcagttaagatgtcctgggccatgcaattttgcaaagtaacacatctaatttgggcagtttcttcagtgagaagagtaatatcatggcaggtgtcattaaagactgcagccctatgttaagccagggcctcaacttgcAGCTGTATGTCTATTGTCACCACTTGGGTGGTGAGTGGCGGCGGTGGGGGGAGGGGAGGCgtgtggcaaaagtggccaacgggtaaaaccaccgggatgcatgcctccagcagagcctggcttttacaatttcccagttagtaagaatggcgtctaaactgggcacgatgtatcccagcaaatgaggatgtccccaggtgcatctaccagtacaattatagggtaagtaaggccaactgtggatgccacatgcccacagccatcctaaggggtgtggtaggcccccacgtggagagtcactctgtcattgcagtcacgtatcactggttacctgaagagattggtttcattgctgtcacattccatgtctattacctgaagaaatagattacattacactgtgggggtagccatcccatattaccggttttagcttgtggcatgctattatcatgtcttttaatacatgtgggtgcacagcccacaagctgtatctatactgctgttgtccaccccggcccatcatctacagaataccccaaa------gtgactttaacctgctcctatactaggtggaaaatatgttgtctcatctctgatggtgtaaaacttatcacatggagtgtggttattgctaaagggaaatgggtgagggtcattatgctaagtatagaaatggctccagatactgaggttagctgcttggatgcaccacggcaggctgatgctggaggagaagggcagctccctgcagatgcaacagtctgttttgttttggggaaaagtcaccatttgcaaccagttggtgaagaggtACACCACCTATGGGCGACAGGTAAGATACCTAGT-GGTAGAAGAAAGGGCAACTTggccgggcacggtggctcacgcctataatcccaacacttttggaggccaaggcaggtggaatacctgaggtctggagttcaagaccagctgacc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53199304 1428 + 80904711 tccaccccagcatg--cttgaatagcccttacattctaatcataccattcttctgagatttccctggggccagggtttgcagaggagccttgcaaccagatgtttcagcagcaatacaaactactgcaacaaaaaagaagaatgaatgtaataacaatcatactgtatataaagtttttccaagtgctcaggagttgattaaaccatctggttacagggtcataagatagtgattctatagcagaaatatgtatatctagggcccgcatggcctgtgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatacacaggttctgctctggtaggtggttaagatgtcctgggccatgcaattttgcaaagtaatgcacctaatttgggcagtttcttcagtgagaagagtaatatcatgataggtatcattaaagactgcagccctatgtttagccagggcctcaacttgcagctgtatgtctgttgtcaccacttgggtggtgggc-------------gggggtgggga--gcagcaaaagtggccaacaggtaaaactaccaggatgcatgcttccagtagtgcctggcttttacaatttcccagttaggaagaatggtgtgtaaactgggcacgatgtgtcccaacaaatgaggatgtccccaggtgcatctaccagtccaattatagggtaagtaaggacaaccgtggatgccatatgcccacggccatcctaaggggtgtggtaggcccccacgtggagagtcactctgtcatcacagtcatgtatcactggttacctgaagagactggttacattgCCATCACATTCCATGTCTATTACCTGAAG-AATAGATTACATTACACTG-GGGGGTAGCCATCCCCTATCACCGATTTTAGCTTGTGGCATGCTATTATCATGCCTTTTAATACATGTGGGTGTACAGCCCACAAGCTATGTCTATACTGCTGTTGTCCACCCTGGCCCATCATCTACAGAATACCCCACAGTGGGGGTGACATTAACCTGCTCCTATGCTAAGTGGAAAATATGTTGTCTCATCTCTGATGGTGGGAAACTTATCACATGAAGTGCTTTTATTGCAAAAGGGAAATGGGTGGGGGTCATTATACCAAGTATAGAAGTGGCTCCAGATACTGAGGTTAGCTGCTTGGATGCCCCATGGCAG---------GGAGGAGAAGGGCAGCTCTCTGCAGAAGCAACTGTCCATTTTGTTTTGGAGAAAGGTCACCATTTGCACCCAGTTGGTGAACAGGTACACCACCTATGGGTGACAGGTGAGATACCTAGTGGGTAGAAGAAAGGGCAAGTCAgccgggcacggtggctcatgcctgtaatcccaacaattttggaggccaaggtgggtggaacacctgaggtctggaggttgaggccagctgacc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52764071 1429 + 80997621 Tccaccccagcatg--cttgaatagcccttacattctaatcataccattcttctgagatttccctggggccagggtttgcagaggagccttgcaaccagatgtttcagcagcaatacaaactactgcaacaaaaaagaagaatgaatgtaataacaatcatactgtatataaagtttttccaagtgctcaggagttgattaaaccatctggttacagggtcataagatagtgattctatagcagaaatatgtatatctagggcccgcatggcctgtgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatacacaggttctgctctggtaggtggttaagatgtcctgggccatgcaattttgcaaagtaatgcacctaatttgggcagtttcttcagtgagaagagtaatatcatgataggtatcattaaagactgcagccctatgtttagccagggcctcaacttgcagctgtatgtctgttgtcaccacttgggtggtgggc-------------gggggtgggga--gcagcaaaagtggccaacaggtaaaactaccaggatgcatgcttccagtagtgcctggcttttacaatttcccagttaggaagaatggtgtgtaaactgggcacgatgtgtcccaacaaatgaggatgtccccaggtgcatctaccagtccaattatagggtaagtaaggacaaccgtggatgccatatgcccacggccatcctaaggggtgtggtaggcccccacgtggagagtcactctgtcatcacagtcatgtatcactggttacctgaagagactggttacattgCCATCACATTCCATGTCTATTACCTGAAGAAACAGATTACATTACACTG-GGGGGTAGCCATCCCCTATCACCGATTTTAGCTTGTGGCATGCTATTATCATGCCTTTTAATACATGTGGGTGTACAGCCCACAAGCTATGTCTATACTGCTGTTGTCCACCCTGGCCCATCATCTACAGAATACCCCACAGTGGGGGTGACATTAACCTGCTCCTATGCTAAGTGGAAAATATGTTGTCTCATCTCTGATGGTGGGAAACTTATCACATGAAGTGCTTTTATTGCAAAAGGGAAATGGGTGGGGGTCATTATACCAAGTATAGAAGTGGCTCCAGATACTGAGGTTAGCTGCTTGGATGCCCCATGGCAG---------GGAGGAGAAGGGCAGCTCTCTGCAGAAGCAACTGTCCATTTTGTTTTGGAGAAAGGTCACCATTTGCACCCAGTTGGTGAACAGGTACACCACCTATGGGTGACAGGTGAGATACCTAGTGGGTAGAAGAAAGGGCAAGTCAgccgggcacggtggctcatgcctgtaatcccaacaattttggaggccaaggtgggtggaacacctgaggtctggagtttgaggccagctgacc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47767240 1439 + 74645514 TCCACCCCAGCATG--CTTGAATAGCCCTTACATTCTAATCATACCATTCTTCTGAGATTTCCCTGGGGCCAGGGTTTGCAGAGGAGCCTTGCAACCAGATGTTTCAGCAGCAATACAAGCTActgcaacaaaaaagaataatgaatgtAATAGCAATCATACTGTATATAAAGTTTTTCCAAGTGCTCAGGAGTTGATTAAACCATGTGGTTACAGGGTCATAAGATAGTGATTCTATAGCAGAAATATGTATATCTAGGGCCCGCATGGCCTGTGTTACATTGTGAGAGTAATCAGGGATATATACACAAAATTCAGTTTTAATTAATACACAGGTTCTGCCCTGGTAGGTGGTTAAGATGTCCTGGGCCATGCAATTTTGCAAAGTAATGCGCCTAATTTGGGCAGTTCCTTCAGTGAGAAGAGTAATATCATGATAGGTATCATTAAAGACTGCAGCCCTATGTTTAGCCAGGGCCTCAACTTGCAGCTGTATGTCTGTTGTCACCACTTGGGTggtgggc-------------gggggtgggga--gtggcAAAAGTGGCCAACAGGTAAAACTACCAGGATGCATGCTTCCAGTAGTGCCTGGCTTTTACAATTTCCCAGTTAGGAAGAATGGTGTGTAAACTGGGCACGATGTGTCCCAACAAATGAGGATGTCCCCAGGTGCATCTACCAGTCCAATTATAGGGTAAGTAAGGACAACCGTGGATGCCATATGCCCACGGCCATCCTAAGGGGTGTGGTAGGCCCCCACGTGGAGAGTCACTCTGTCATCGCAGTCACGTATCACTGGTTACCTGAAGAGATTGGTTACATTGCCGTCACATTCCATGTCTATTACCTGAAGAAATAGATTACATTACACTGTGGGGGTAGCCATCCCATATCACCGATTTTAGCTTGTGGCATGCTATTATCATGCCTTTTAATACATGTGGGTGCACAGCCCACAAGCTGTATCTGTACTGCTGTTGTCCACCCTGGCCCATCATCTACAGAATACCCCGCAGTGGGGGTTACATTAACCTGCTCTTATGCTAGGTGGAAAATATGTTGTCTCATCTCTGATGGTGGGAAACTTATCACATGAAGTGCTTTTATTGCGAAAGGGAAATGGGTGGGGGTCATTATACCAAGAATAGAAGTGGCTCCAGATACTGAGGTTAGCTGCTTGGATGCCCCATGGCAGGCTGATGCTGGAGGAGAAGGGCAGCTCTCTGCAGAAGCAACTGTCCATTTTGTTTTGGAGAAAGGTCACCATTTGCACCCAGTTGGTGAACAGGTAAACCACCTATGGGCGACAGGTGAGATACCTAGTGGGTAGAAGAGAGGGCAagtcggctgggcacggtggctcatgcctgtaatcccaacaattttggaggccaaggcgggtggaacacctgaggtctggagtttgaggccagctgacc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10030771 1439 - 75148670 Tccaccccagcatg--cttgaatagcccttacattctaatcatgccattcttctgagatttccctggggccagggtttgcagaggagccttgcaaccagatgtttcagcagcaatacaaactactgcaacaaaaaagaataatgaatgtaatagcaatcatactgtatataaagtttttccaagtgctcaggagttgattaaaccatgtggttatagggtcataagatagtgattctatagcagaaatatgtatatctagggcccgcatggcctgtgttacattgtgagagtaatcagggatatatacacaaaattcagttttaattaatacacaggttctgccctggtaggtggttaagatgtcctgggccatgcaattttgcaaagtaacgcacctaatttgggcagtttcttcagtgagaagagtaatatcatgataggtatcattaaagactggagccctatgtttagccagggcctcaacttgcagctgtatgtctgttgtcaccacttgggtggtgggc-------------gggggtgggga--gtggcaaaagtggccagcaggtaaaactaccaggatgcatgcttccagtagtgcctggcttttacaatttcccagttaggaagaatggtgtgtaaactgggcacgatgtgtcccaacaaatgaggatgtccccaggtgcatctaccagtccaattatagggtaagtaaggacaaccgtggatgccatatgcccacggccatcctaaggggtatggtaggcccccacgtggagagtcactctgtcatcgcagtcacgtatcactggttacctgaagagattggttacattgccgtcacattccatgtctattacctgaagaaatagattacatcacactgtgggggtagccatcccatatcaccaattttagcttgtggcatgctattatcatgccttttaatacatgtgggtgcacagcccacaagctgtatctatactgctgttgtccaccctggcctatcatctacagaataccccacagtgggggtgacattaacctgctcctatgctaggtggaaaatatgttgtctcatctctgatggtgggaaacttatcacatgaagtgcttttattgcgaaagggaaatgggtgggggtcattataccgagtatagaagtggctccagatactgaggttagttgcttggatgccccatggcaggctgatgctggaggagaagggcagctctctgcagaagcaactgtccattttgttttggagaaaggtcaccatttgcacccagttggtgaacaggtAAACCACCTATGGGCGACAGGTGAGATACCTAGTGGGTAGAAGAGAGGGCAAGTTggccgggcacggtggctcatgcctgtaatcccaacaattttggaggccaaggcgggtggaacacctgaggtctggagtttgaggccagctgacc i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39458855 723 - 61074082 I e mm10.chr11 99621345 866 + 122082543 I e calJac3.chr5 112915947 2524 + 159171411 I a score=2935745.000000 s hg38.chr17_JH159146v1_alt 218443 1314 + 278131 aacatggtgaaaccctgtctctactaaaaatacaaaaaa-atcaggcaggcgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatctcttgaacccaggaggcagagattgcagtgagctgagatcatgccactgcactctagcctgggcaacaagagcaaaactccatctcc---aaaaaaaaaaaaaaaaa----agaagaaaGGGCAAGTCAGGCC------ATCTAACAAGACAGGAAGTTGTGTCGTTCTGAGAGATCACCACCCCCAGCAGCAACCTGTGCCTGGTTTGCAATACCACATGGATTGCCCACTTCTGCAACACGTTGCAGCCACAGTAAGACAGTGTGGATATTGTAATGTCCCATAATGACAGGATGATCACTCCCTTGCACAAGTGGGGACTAGGATTGATTATTTTAGAAGTACAAGGAGGAATAGGATGTAAAATAGGTGTGATCTGTATATCATTTTCTACGCCCTTGCCCCATGGAGTGAAAAAACTGTACCAACTGGGGCTGGTTTGTGATTTCCGGGCCCATGTAATGATGTGCTCTCCAGTGGGTAGGTCCTATGGCAAGGGCATAG-CCCCAGGTTGAGTCCCAGGTTGAGGCAAAGGAGGGGGGTACCATCCCTTACACTG------TCAACCTGGATCGTGATGGTGGTATCAGGTCCTTGAGCCAGAAGAGTGTGTGCACTGGGGAGATGAGAGCACACCTGTTAATTCAGGGATATcttgggcctgcacggcctgagttacattgtgagagtaatcagggatatat------------------------------------------------------------------------atacacaacattcagttttaattaatgcagaagatccacactaagcgtccagggcatgtgattttgcaaAGTGATACATCTAATTTGGATAGTTTCATTCAGGGCGCAGATGGGTGCTGGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAATGGTTGTTTCATCCATTCAATCAGCCCCGCTGCTATAGGGTTGTATGGCAGGTAGAAATGCCAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGGCACTGTTGATATCAGTGGGGACGCCACAGGCTACATATAACTCCAGTCTTTTTATGGTGGTTTTCTGGGTAACATACTTGCTGGGATACACCTACAGTAGCCCCATGCAGGTGTCTGCACAAGTCAAGGCGTAGCGGAAGCCATCAGATAGGGGCAAAGGCCCTtgggattctgggaccttggccttcatcctagtataaaggggctggcacctgccat s panTro4.chr17 66340807 1315 - 82630442 aacatggtgaaaccccgtctctac--aaaatacaaaaaa--tcaggcaggcgtggtggtgcatgcctgtaatcccagccacttgggaggctgaggcaggagaatcacttgaacccaggaggcgaagattgcagtgagccgagatcatgccactgcactctagcctgggcaacaagagcaaaactccatctcc---aaaaaaaaaaaaaaaa------gaagaaaGGGCAAGTCAGGCC------ATCTAACAAGACAGGAAGTTGTGTCGTTCTGAGAGATCACCACCCCCAGCAGCAACCTGTGCCTGGTTTGCAATACCACATGGATTGCCCACTTCTGCAACATGTTGCAGCCACAGTAAGACAGTGTGGATATTGTAATGTCCCATAATGACAGGATGATCACCCCCTTGCACAAGTGGGGACTAGGATTGATTATTTTAGAAGTACAAGGAGGAATAGGATGTAAAATAGGTGTGATCTGTATATCATTTTCTATGCCCTTGCCCCATGGAGCGAAAAAACTGTACCAACTGGGGCTGGTTTGTGATTTCCGGGCCCATGTAATGATGTGCTCTCCAGTGGGTAGGTCCTATGGCAAGGGCATAG-CCCCAGGTTGAGTCCCAGGTTGAGGCAAAGGAGTGGGGGACCATCCCTTACACTGGGATGGTCAACCTGGATCGTGATGGTGGTATCAGGTCCTTGAGCCAGAAGAGTGTGTGCACTGGGGAGATGAGAGCACACCTGTTAATTCAGGGATATcttgggcctgcacggcctgagttacattgtgagagtaatcagggatatat------------------------------------------------------------------------atacgcaacattcagtTTTAATTAATGCAGAAGATCCACACTAAGCATCCAGGGCATGTGATTTTGCAAAGTGATACATCTAATTTGGATAGTTTCATTCAGGGCGCAGATGGGTGCTGGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAATGGTTGTTTCATCCATTCAATCAGCCCCGCTGCTATAGGGTTGTATGGCAGGTAGAAATGCCAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGGCACTGTTGATATCAGTGGGGATGCCACAGGCCACATATAACTCCAGTCTTTTTATGGTGGTTTTCTGGGTAACATACTTGCTGGGATACACCTACAGTAGCCCCATGCAGGTGTCTGCACAAGTCAAGGTGTAGCGGAAGCCATCAGATAGGGGCAAAGGCCCTtgggattctgggaccttggccttcatcctagtataaaggggctggcacctgccat i panTro4.chr17 I 398 C 0 s ponAbe2.chr17 24866378 1292 - 73212453 aacatggtgaaatcccatctctactaaaaatacaaaaaaaattaggcaggcatggtggtgtatgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcggagattgcagtgagccgagatcatgccactgcactctagcctgggcaacaagagcgaaactccgtctca---aaaaaaaaaaaaaaaa-------aagaaaGGGCAAGTCAGGCC------ATCTAACAAGACAGGAAGTTGTATTGTTCTGAGAGATCACCACCCCCAGCTGCAGCCTGTGCCTGGTTTGCAATACCACATGGATTGGCCACTTCTGCAACATGTTGCAGCCAGAGTAAGACAGTGTGGATATTGTAATGTCCCATAATGAGAGGATGATCACCCCCTTGTACAAGTGGGGACTAGGATTGATTATTTTAGAAGTACAAGGAGGAATAGGATGTAAAATAGGTGTGATCTGTATATCATGTTCTATGCCCTTG-CCCATGGAGTG-AAAAACTGTACCATCTGGGGCTGGTTTGTGATTTCCGGG-CCGTGTAATGATGTGCTCTCCAGTGGGTAGGTCCTATGGCAAGGGCATAGCCCCCAGGTTGAGTCCCAGGTTGAGGAAAAGGAGGGGAGGACCATCCCTTACACTG------TCAACCTGGATCGTGATGGTGGTATCAGGTCCTTGAGCCAGAAGAGTGTGTGCACTGGGGAGATGAGAGCACACATGTTAATTCAGGGATATCTTGGgcctgcatggcctgggttacattgtgagagtaatcagggatatat------------------------------------------------------------------------atacacaacattcagttttaattaatgcagaagatccacactaagcgtccagggcatgtgattttgcaaagtgacacatctaatttgggtagtttcattcagGGTGCAGATGGGTGCTG------------------GAGCCAGAGAGGGCATCTCCTGCCAGAGTTATTTCTTCAATGGTTGTTTCATCCATTCAATCAGCCCTGCTGCTATAGGGTTGTATGGCAGGTAGACATGCCAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGGCACTGTTGATATCAGTGGGGATGCCACAGGCCACATATAACTCCAGTCTTTTTATGGTGGTTTTCTGGGTAACATACTTGCTGGGATATGCCTACAGTAGCCCCATGCAGGCGTCTGCACAAGTCAAGGCATAGTGGAAGCCATCAGATAGGGGCAAAGGCCCTtgggattctgggaccttggccttcatcctagtataaaggggctggcacctgccat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48093575 1302 - 81552678 aacatggtgaaaccccatctctactaaaaatacaaaaaa--tcagccgggtgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggtaggagaatcacttgaacccaggaggcagagttagcagtgagctgagatcatgccactgcactctagcctgggcaacaagagcgaaactctgtctc--------aaaaaaaaaaga-------aagaaaGGGCAAGTCAGGCC------ATCTAACAAGACAGGAAGTTGTGTTGTTCTGAGAGAGTACCA-CCCCAGCAGCAGCCTGTGCCTGGTTTGCAATACCACATGGATTGGCCACTTCTGCAACATGTTGCAGCCAGAGTAAGACAGTGAGGATATTGTAATGTCCCATAATGAGAGGACGGTCACGCCCTTGCACAAGTGGGGATCAGGATTGATTA-TTTAGAAGTACAAGGAGGAATAGGATGTAAAATAGGTGTGATCTGTATATCATGTTCTATGCCCTTGCCCCATGGAGTGAAAAAAATGTATCATCTGGGGCTAGTTTGTGATTTCCGGGCCAGCGTAATCATGTGCTCTCCAGTGGGTAGGTCCTGTGGCAAGGGCATAG-CCCCAGGTTGAGTCCCAGGTTGAGGCAAAGGAGTATGGAACCATCCCTTACCCTG------TCAACCTGTATCATGACTGTGGTATGAGGTCCTTGAGCCAGAAAAGTGTGTGCACTGGGGAGATGAGAACACATGTGTTAATTCAGgggtatcttgggcctgcatggcctgagttacattgtgagagtaatcagggacacat------------------------------------------------------------------------acacacaacattcagttttaattaatgcagaagatccacaccaagcgtccagggcatgtgattttgcaaagtgacacatctaatttgggtagtttcattcagGACGCAGATGGGTGCTGGTAAGCAGTGTGTCCACAGAGTCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTC-ATGGTTGTTTCATCCATTCAATCAGCCCCGCTGCTATAGGGTTGTACAGCAGGTAGAAATGCCAATGGATATCCAGGGTCTCCACCGATTCTTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGGCACTGTTGATATCAGTGGGGATGCCACAGGCCACACACAACTCCAGTCTTTTTATGGTGGTTTTCTGGGTGACATACTTGCTGTGATATGCCTACAGTAGCCCCATGCAGGTGTCTGCACAAGTCAAGGCATAGCGGAAGCCATCGGATAGGGGCAAAGGTCCTtgggattctgggaccttggccttcatcctagtataaaggggctggcacctgccat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53200732 1273 + 80904711 aacatggtgaaaccccaactctactaaaaatacaaaaaa--ttagctgggcatggtggtgcatgcctgtaatcccagctacttgggaggctgaggta-------------------------ggagattgcagtgagccgagatcgtgccactgcactctagcctgggcaacaagagcgaaattctgtctcc------aaaaaaaaaaaaaaaaagaaaagaaaGGGCAAGTTAGGCCATCTAAATCTAACAAGACAGGAAGTTGTGTTGTTCTGAGACAGCACCACCCCCAGCAGCAGCCTGTGCCTGGTTTGCAATACCACATGGATTGGCCACTTCTGCAACGTGTTGCAGCCAGAGTGAGACAGTGGGGATATTGTAATATCCCATAATGAGAGGATGATCACCCCCTTGCACAATTGGGGACCAGGATTGATTA-TTTAGAAGTACACGTAGGAATAGGTTGTAAAATAGGTGTGATCTATATATCATGTTCTATGCCCTTGCCCCATGGAGTGAAAAAACTGTACCCTCTGGGGCTGGTTTGTGATTTCCGGGCCCGTGTAATGATGTGCTCTCCAGTGGGTAGGTTCTATGGCAAGGGCATAG-ACCCAGGTTGAGTTCCAGGTTGAGGCAAAGGAGTAGGGGACAATCCCTCATACTG------TCAAGCTGGATCATGACGGTGGTATCA-GTCCTTGAGCCTGAAGAGTGTGTGCACTGGGGAGATGAGAACACACACGTTAATTCAAgggtgtcttgggcctgcatggcctggtttacattgtgagagtaatcagggatatat------------------------------------------------------------------------acataca-----cagttttaattaatgcacaagatccACACTAAGTGTTCAGGGCTTGTGATTTTGCAAAGTGACACGTCTAATTTGGGCAGTTTCATTCAGGGCGCAGATGG-----GGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAATGGTTGTTTCATCCATTCAATCAGCCCCACTGCTAGAGCGTTGTACAGCAGGTAGAAAAGTCAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGACACTGCTGATATCAGTGGGGATGCCACAGGCCACACATAACTCCAGTCTTCTTACGGTGGTTGTCTGGGTGACATACTTGCTGGGATATGCCTACAGTAGCCCCATG----------CACAAGTCAAAGCATAGTGGAAACCATCAGATAGGGGCGAAGGTCCTTGGAATTCTGGGACCTCGGCCTTCATCCTAGTATAAAGGGGCTGCTACCTGCCAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52765500 1278 + 80997621 aacatggtgaaaccccaactctactaaaaatacaaaaaa--ttagctgggcatggtggtgcatgcctgtaatcccagctacttgggaggctgaggta-------------------------ggagattgcagtgagccgagatcgtgccactgcactctagcctgggcaacaagagcgaaattctgtctccag-aaaaaaaaaaaaaaagaaaagaaaaGAAAGGGCAAGTTAGGCCATCTAAATCTAACAAGACAGGAAGTTGTGTTGTTCTGAGACAGCACCACCCCCAGCAGCAGCCTGTGCCTGGTTTGCAATACCACATGGATTGGCCACTTCTGCAACGTGTTGCAGCCAGAGTGAGACAGTGGGGATATTGTAATATCCCATAATGAGAGGATGATCACCCCCTTGCACAATTGGGGACCAGGATTGATTA-TTTAGAAGTACACGTAGGAATAGGTTGTAAAATAGGTGTGATCTATATATCATGTTCTATGCCCTTGCCCCATGGAGTGAAAAAACTGTACCCTCTGGGGCTGGTTTGTGATTTCCGGGCCCGTGTAATGATGTGCTCTCCAGTGGGTAGGTTCTATGGCAAGGGCATAG-ACCCAGGTTGAGTTCCAGGTTGAGGCAAAGGAGTAGGGGACAATCCCTCATACTG------TCAAGCTGGATCATGACGGTGGTATCA-GTCCTTGAGCCTGAAGAGTGTGTGCACTGGGGAGATGAGAACACACACGTTAATTCAAGGGTGTCTTGGGCCTGCATGGCCTGGTTTACATTGTGAGAGTAATCAGGGATATAT------------------------------------------------------------------------ACATACA-----CAGTTTTAATTAATGCACAAGATCCACACTAAGTGTCCAGGGCTTGTGATTTTGCAAAGTGACACGTCTAATTTGGGCAGTTTCATTCAGGGCGCAGATGG-----GGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAATGGTTGTTTCATCCATTCAATCAGCCCCACTGCTAGAGCGTTGTACGGCAGGTAGAAAAGTCAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATATGGTAAAGTGAGAGCCCTGGACACTGCTGATATCAGTGGGGATGCCACAGGCCACACATAACTCCAGTCTTCTTACGGTGGTTGTCTGGGTGACATACTTGCTGGGATATGCCTACAGTAGCCCCATG----------CACAAGTCAAAGCATAGTGGAAACCATCAGATAGGGGCGAAGGTCCTTGGAATTCTGGGACCTCGGCCTTCATCCTAGTATAAAGGGGCTGCTACCTGCCAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47768679 1387 + 74645514 aacatggtaaaaccccaactctactaaaaatacaaaaaa--ttagctgggcgtggtggtgcaggcctgtaatcccagctacttgggaggctgaggtaggagaatcacttgaacccaggagacggagattgcagtgagccgagatcgtgccactgcactctagcctgggcaacaagagcgaaattctgtctccagaaaaaaaaaaaaaaagaaaaagaaaagaaagggcgAGTTAGGCCATCTAAATCTAACAAGACAGGAAGTTGTGTTGCTCTGAGACAGCACCACCCCCAGCAGCAGCCTGTGCCTGGTTTGCAATACCACATGGATTGACCATTTCTGCAACGTGTTGCAGCCAGAGTGAGACAGTGGGGATACTGTAATATCCCATAATGAGAGGATGATCA-ACCCTTGCACAATTGGGGACCAGGATTGATTA-TTTAGAAGTACAAGTAGGAATAGGTTGTAAAATAGGTGTGATCTATATATCATGTTCCATGCCCTTGCCCCATGGAGTGAAAAAACTGTACCCTCTGGGGCTGGTTTGTGATTTCCGGGCCTGTGTAATGATGTGCTTTCCAGTGGGTAGGTTCTATGGCAAGGGCATAG-ACCCAGGTTGAGTTCCAGGTTGAGGCAAAGGAGTAGGGGACAATCCCTTATACTG------TCAAGCTGGATCATGACAGTGGTATCA-GTCCTTGAGCCAGAAGAGTGTGTGCACTGGGGAGATGAGAACACACACGTTAATTCAAGGGTGTCTTGGGCCTGCATGGCCTGGGTTACATTGTGAGAGTAAtcagggatatatatatatatatatatatatatatatatatatacacacacacacacatacatatatatatacatacatatacacacacaca-----cagttttaatTAATGCACAAGATCCACACTAAGTGTCCAGGGCTTGTGATTTTGCAAAGTGACCCGTCTAATTTGGGCAGTTTCATTCAGGGCTCAGATGGGTGCTGGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAACGGTTGTTTCATCCATTCAATCAGCCCTGCTGCTATAGGGTTGTACGGCAGGTGGGTA---CAATGGATATCCAGGGCCTCCACCGATTCCTGTACTTTGTATACGGTAAAGTGAGAGCCCTGGACACTGCTGATATCAGTGGGGATGCCACAGGCCACACATAACTCCAGTCTTCTTACGGTGGTTGTCTGGGTGACATACTTGCTGGGATATGCCTATGGTAGCCCCATGCAGGTGTCTACACAAGTCAAAGCATAGTGGAAACCATCAGATAGGGGCGAAGGTCCTTGGAATTCTGGGACCTTGGCCTTCATCCTAGTATAAAGGGGCTGGTACCTGCCAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10032210 1313 - 75148670 aacatggt-aaaccccaactctactaaaaatacaaaaaa--ttagctgggcttggtggtgcaggcctgtaatctcagctacttgggaggctgaggtaggagaatcacttgaacccaggagacggagattgcagtgagctgagatcgtgccactgcactctatcctgggcaacaagagcgaaattctgtctccag-aaaaaaagaaaaagaaaaaagaaaaGAAAGGGCAAGTTAGGCCATCTAAATCTAACAAGACAGGAAGTTGTGTTGCTCTAAGACAGCACCACCCCCAGCAGAAGCCTGTGCCTGGTTTGCAATACCACATGGATTGACCATTTCTGCAACGTGTTTCAACCAGAGTGAGACAGTGGGGATATTGTAATATCCCATAATGAGAGGATGATCA-CCCCTTGCACAATTGGGGACCAGGATTGATTA-TTTAGAAGTACAAGGAGGAATAGGTTGTAAAATAGGTGTGATCTATATATCATGTTCTATGCCCTTGCCTTATGGAGTGAAAAAACTGTACCCTCTGGGGCTGGTTTGTGATTTCCGGGGCCGTGTAATGATGTGCTCTCCAGTGGGTAGGTTCTATGGCAAGGGCATAG-ACCCAGGTTGAGTTCCAGATTGAGGCAAAGGAGTAGGGGACAATCCCTTATACTG------TCAAGCTGGATCATGACGGTGGTATCA-GTCCTTGAGTCAGAAGAGTGTGTGCACTGGGGAGATGAGAACACACACGTTAATTCAAGGGCGTCTTGGGCCTGCATGGCCTGGGTTACATTGTGAGAGTAATCAGGGATATAT------------------------------------------------------------------------ATATACA-----CAGTTTTAATTAATGCACAAGATCCACACTAAGTGTCCAGGGCTTGTGATTTTGCAAAGTGACACGTCTAATTTGGGCAGTTTCATTCAGGGCGCAGATGGGTGCTAGTAAGCAGTGTGTCCACAGAGCCAGAGAGGGCGTCTCCTGCCAGAGTTGTTTCTTCAACGGTTGTTTCATCCATTCAATCAGCCCTGCTGCTATAGGGTTGTACGGCAGGTGGATA---CAATGGATATCCAGGGCCTCCACCGATTCCTGCACTTTGTATAAGGTAAAGTGAGAGCCCTGGACACTGCTGATATCAGTGGGGATGCCATAGGCCACACATAACTCCAGTCTTCTTACGGTGGTTGTCTGGGTGACATACTTGCTGGGATATGCCTACAGTAGCCCCATGCAGGTGTCTGCACAAGTCAAAGCATAGTGGAAACCATCAGATAGGGGCGAAGGTCCTtggaattctgggaccttggccttcatcttagtataaaggggctggtacctgccat i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39458855 723 - 61074082 I e mm10.chr11 99621345 866 + 122082543 I e calJac3.chr5 112915947 2524 + 159171411 I a score=104367.000000 s hg38.chr17_JH159146v1_alt 219757 81 + 278131 tcctctgtgggagggcagcgggctgagcctgaggctcctttgtgaagcactc--------ttccagcttgagcttctgccatagcctga s panTro4.chr17 66342122 81 - 82630442 tcctctgtgggagggcagcgggctgagcctgaggctcctttgtgaagcactc--------ttccagcttgagcttctaccatagcctga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24867670 81 - 73212453 tcctctgtgggagggcagtgggctgagcctgaggctccttagtgaagcactg--------ttccagcttgagcttctgccatagcctga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48094877 81 - 81552678 tcctctgtgggagggcagggggctgagcctgaggctccttagtgaagcactg--------ttccagcttgagcttctgccatagcctga i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47770066 89 + 74645514 TCCTCTGTGGGAGGGCAGCGGGCTGAGCCTGAGGCTCCTTAGTGAAGTTCCAGCTTGAGCTTCCAGCTTGAGCTTCCGCCATAGCCTGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10033523 81 - 75148670 tcctctgtgggagggcagcgggctgagcctgaggctccttagtgaagcactg--------ttccagcttgagcttccgccatagcctga i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39458855 723 - 61074082 I e mm10.chr11 99621345 866 + 122082543 I e calJac3.chr5 112915947 2524 + 159171411 I e macFas5.chr16 52766778 0 + 80997621 C e rheMac3.chr16 53202005 0 + 80904711 C a score=28908.000000 s hg38.chr17_JH159146v1_alt 219838 35 + 278131 ccagaacagcattgaactgtAGGCTCTTAGATAAC s panTro4.chr17 66342203 35 - 82630442 ccagaacagcattgaactgtAGGCTCTTAGATAAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24867751 35 - 73212453 ccagaacagcattgaactgtAGGCCCTTAGATAAC i ponAbe2.chr17 C 0 C 0 s papAnu2.chr16 47770155 34 + 74645514 CCAGAACAGCATTGAACTGTAGGCTCTTAGATAA- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10033604 34 - 75148670 ctagaacagcattgaactgtAGGCTCTTAGATAA- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39458855 723 - 61074082 I e mm10.chr11 99621345 866 + 122082543 I e calJac3.chr5 112915947 2524 + 159171411 I e macFas5.chr16 52766778 0 + 80997621 C e rheMac3.chr16 53202005 0 + 80904711 C e nomLeu3.chr19 48094958 0 - 81552678 C a score=94546.000000 s hg38.chr17_JH159146v1_alt 219873 111 + 278131 AGTCTAGATTCAAATCCAAGCATGTCTAAATCG-AAAGCTGTGTTTTCACAAATAGGCTTATGAA-AATGAGATTCTCCTTTGAATTAATTTGAATAGGCTCACTTTGCACTA s panTro4.chr17 66342238 111 - 82630442 AGTCTAGATTCAAATCCAAGCATGTCTAAATCG-AAAGCTGTGTTTTCACAAATACGCTTATGAA-AATGAGATTCTCCTTCGAATTAATTTGAATAGGCTCACTTTGCACTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24867786 111 - 73212453 AGTCTATATTCAAATCCAAGCATGTCTAAATCA-AAAGCTGTGTTTTCACAAATAGGCTTATGAA-AATGAGATTCTCCTTCGATTTAATTTGAATAGGCTCACTTTGCACTA i ponAbe2.chr17 C 0 C 0 s papAnu2.chr16 47770189 100 + 74645514 ----------CAAATCCAAGCATGTC-AACCTG-AAAGCTGTGTTTTCACAAATAGGCTTATGAA-AATGAGATTCTCCTTCGATTTAACATGAATAGGCTCACTTTGCACTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10033638 100 - 75148670 ----------CAAATCCAAGCATGTC-AACCTG-AAAGCTGTGTTTTCACAAATAGGCTTATGAA-AATGAGATTCTCCTTCAATTTAACATGAATAGGCTCACTTTGCACTA i chlSab2.chr16 C 0 C 0 s mm10.chr11 99622211 113 + 122082543 agtctggatacaaagtcagCTGTGCCTCACTGGTAAATTTATGCTTAAACTAAGATGATTACAAACAATGGAATCATTCTACAACTTAATGCTAATAAGTTGGCTTTACACTC i mm10.chr11 I 866 C 0 e canFam3.chr9 39458855 723 - 61074082 I e calJac3.chr5 112915947 2524 + 159171411 I e macFas5.chr16 52766778 0 + 80997621 C e rheMac3.chr16 53202005 0 + 80904711 C e nomLeu3.chr19 48094958 0 - 81552678 C a score=331291.000000 s hg38.chr17_JH159146v1_alt 219984 174 + 278131 TCCATTAATCCTCATTATATTGATAAAGCTAAAAATTTAACTAACT----ATCCCCTCCAGAAAATTTATCA-AAATTTACCATAAAACCAACCCTGTCACAAATACTTGGCCACTGTTCTATTTTTATTTTCTTTGTAGAAAGCCATCTGTTCATCCTTGTGTATTGATTGGTGTATT s panTro4.chr17 66342349 174 - 82630442 TCCATTAACCCTCATTATATTGATAAAGCTAAAAATTTAACTAACT----ATCCCCTCCAGAAAATTTATCA-AAATTTACCATAAAACCAACCCTGTCACAAATACTTGGCCACTGTTCTATTTTTATTTTCTTTGTAGAAAGCCATCTGTTCATCCTTGTGTATTGATTGGTGTATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24867897 173 - 73212453 TCCATTAATCCTCATTATATTGATAAAGCTAAAAATTT-ACTAACT----ATCCCCTCCAGAAAATTTATCA-AAATTTACAATAAAACCAACCCTGTCACAAATACTTGGCCACTCTTCTATTTTTATTTTCTTTGTAGAAAGCCATCTGTTCATCCTTGTTTATTGATTGGTGTATT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53202005 174 + 80904711 TCCATTAATCCTCATTTTATTGATACAGCTAAAGATTT-ACTAACT----ATCCCCTCCAGAAAATTTATCATAAATTTACAATAAAACCAACCCTGTCACAAATACTTGGCCACTCTTCTATTTTTATTTTCTTTGTAGACAGCCATCTGTTCATCCTGGTGTATTGATTGGTGTATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52766778 174 + 80997621 TCCATTAATCCTCATTTTATTGATACAGCTAAAGATTT-ACTAACT----ATCCCCTCCAGAAAATTTATCATAAATTTACAATAAAATCAACCCTGTCACAAATACTTGGCCACTCTTCTATTTTTATTTTCTTTGTAGACAGCCATCTGTTCATCCTGGTGTATTGATTGGTGTATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47770289 169 + 74645514 TCCATTAATCCTCATTTTATTGATACAGCTAAAGATTT-----ACT----ATCTCCTCcagaaaatttatca-aaatttacaaTAAAACCAACCCTGTCACAAATACTTGgccacttttctatttttattttgtttgtagaaaGCCATCTGTTCATCCTTGTGTATTGATTGGTGTATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10033738 174 - 75148670 TCCATTAATCCTCATTTTATTGATACAGCTAAAGATTT-ACTAACT----ATCCCCTCCAGAAAATTTATCATAAATTTACAATAAAACCAACCCTGTCACAAATACTTGGCCACTCTTCTATTTTTATTTTCTTTGTAGACAGCCATCTGTTCATCCTGGTGTATTGATTGGTGTATT i chlSab2.chr16 C 0 C 0 s mm10.chr11 99622324 165 + 122082543 TCCA-TATTCACAGTTTTATCTATTAGCCTCCAGATTT-ATTAATTTATGATCAC------AAAACTTATTA-AAATT-----CAAAATTTAACCTGGCACATATTCTTCAACATCATTTAATTTTTACTGTCTTTGTGGAAAACTATCTTCCTATCTTTGCACAATGTCTGGCATACT i mm10.chr11 C 0 C 0 e canFam3.chr9 39458855 723 - 61074082 I e calJac3.chr5 112915947 2524 + 159171411 I e nomLeu3.chr19 48094958 0 - 81552678 C a score=1430417.000000 s hg38.chr17_JH159146v1_alt 220158 628 + 278131 AAGCTGGCTTCACATTGCTACCATGGTtgaattag--acagcta---ttgctgcatagcaagcaaccacaaactctcatagcttattgtaacaagtatttatttattggtcatatatttgtaggttagttggggtttggttGA-TTAAGGTTGGCCTTAGCTTCTGCCCACAGGTTGGTTTGGGACTTTCTTTTGAATGagagttgtcatatttagcaaataaaaatacaggttccccagttacatgtcaatttcagaaaaacaacaaataattttattacaattatatctgattatgcatgg-g-tatacttacatttaaaaattatttgttgtttgtctggaatt-ccattttaatggagtgtccggtatttta-GGGGCC-ATCCTC--CTCT-----GAGAACAAAGGCCCAAGGGAACAATCT-----------CACATT-TTGAGTCTT---CGGGTCATGCCTtct-------cattggtcaaagcaactcacatggcaaagtccaagtcagagggtggga--------gaggaTACTTCTGGAGTTGGGTGGGAGGAGGGGGGAGAGTAAACATTAATAAGGAATAATCTAATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGT-GTGAGGCTTGGA-AAA-GACTTCTAGAAGATCAAATTA s panTro4.chr17 66342523 633 - 82630442 AAGCTGGCTTCACATTGCTACCATGGTtgaattag--acagcta---ttgctgcatagcaagcaaccacaaactctcatagcttattgtaataagtatttatttattggtcatatatttgtaggttagttggggtttggttGA-TTAAGGCTGGCCTTAGCTTCTGCCCACAGGTTGGTTTGGGACTTTCTTTTGAATGagagttgtcatatttagcaaataaaaatacagattccccagttacatgtcaatttcagaaaaacaacaaataattttattacaattatatctgattatgcatgg-g-tatacttacatttaaaaattatttgttgtttgtctggaatt-ccattttaatggagtgtccggtatttta-GGGGCC-ATCCTC--CTCT-----GAGAACAAAGGCCCAAGGGAACAATCT-----------CACATT-TTGAGtgtt---cgggtcatgccttctgacatctcattggtcaaagcaactcacatggcaag--ccaagtcagagggtggga--------gaggaTACTTCTGGAGTTGGGTGGGAGGAGGGGGGAGAGTAAACATTAATAAGGAATAATCTAATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGT-GTGAGGCTTGGA-AAA-GACTTCTAGAAGATCAAATTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24868070 631 - 73212453 AAGCTGGTTTCACATTGCCACCATGGTTGAATTAG--ACAGCTA---TTGCTGCACAGCAAGCAACCACAAACTCTCATAGCTTATTGTAACAAGTATTTATTTATTGGTTGTCTATCTGTAGGTTAGTTGGGGTTTGGTTGA-TTAAGGCTGGCCTTGGCTTCTGGCCACAGGTTGGTTTGGGACTTTCTTTTGAATtagagttgtcatatttagcaaataaaaatacaggtgccccagttacatgtcaatttcagaaaaacaataaataattttattacaattatatctgattatgcatgg-g-tatacttacatttaaaaattatttgttgtttgtctggaatt-ccattttaatggagtgtctggtatttta-GGGGCC-ATCCTC--CTCT-----GAGAACAGAGGCCCAAGGGAACAAACT-----------CACATT-TTGAGTCTt---tgggtcatgccttctgacatctcattgatcaaagcaactcacatggtgaagtccaagtcagagggtggga--------gaggaTACTTCTGGGGTTGGGTGGGAGGAGGGGGGAGAGTAAACATTAATAAAGAA-----TAATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGTCGTGAGGCTTGGA-AAA-GACTTCTGGAAGATCAAATTA i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53202179 636 + 80904711 AAGCTGGTTTCACATTGCTACCATGGTtgaattag--acagcta---ttgctgcatagcaagcaagcacaaactctcatagcttattgtaacaagtatttatttattggttatatatctgtcggttagttgggGTTTGATTGA-TTAAGGTTGGCCTTGGCTTCTGGCCACAGGTTGGTTTGGGACTTTCTTTTGAATtagagttgtcatagttagcaaataaaaatacaggttccccagttacatttcaatttcagataaacaacaaataattttattataattatatctgattatgcatgg-g-aatacttacatttaaaaattatttgttgtgtgtctggaatt-ccattttaatggagtgtctggtattttagggggca-atcctT--Ctct-----gagagtggaagcccaagggaacaagct-----------cacatt-ttgagtctt---tgggtcatgccttctgacatctcattggtcaaagcaactcacatggtaaagttcaagtcacagggtggaa--------gaggaTACTTCTGG-GTTGGGTGGGAGGAGGGGGGAGAGTAAACATTAATAAAGAATAATCTGATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGTTGTGAGGCTTGGA-AAA-GACTTCTAGAGGATCAAATTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52766952 636 + 80997621 AAGCTGGTTTCACATTGCTACCATGGTtgaattag--acagcta---ttgctgcatagcaagcaagcacaaactctcatagcttattgtaacaagtatttatttattggttatatatctgtcggttagTTGGGGTTTGATTGA-TTAAGGTTGGCCTTGGCTTCTGGCCACAGGATGGTTTGGGACTTTCTTTTGAATtagagttgtcatagttagcaaataaaaatacaggttccccagttacatttcaatttcagataaacaacaaataattttattataattatatctgattatgcatgg-g-aatacttacatttaaaaattatttgttgtgtgtctggaatt-ccattttaatggagtgtctggtattttagggggca-atcctT--Ctct-----gagagtggaagcccaagggaacaagct-----------cacatt-ttgagtctt---tgggtcatgccttctgacatctcattggtcaaagcaactcacatggtaaagttcaagtcacagggtggaa--------gaggaTACTTCTGG-GTTGGGTGGGAGGAGGGGGGAGAGTAAACATTAATAAAGAATAATCTGATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGTTGTGAGGCTTGGA-AAA-GACTTCTAGAGGATCAAATTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47770458 636 + 74645514 AAGCTGATTTCACATTGCTACCATGGTTGAATTAG--ACAGCTA---TTGCTGCATAGCAAGCAAGCACAAACTCTCATAGCTTATtgtaacaagtatttatttattggttatATATCTGTCAGTTAGTTGGGGTTTGATTGA-TTAAGGCTGGCCTTGGCTTCTGGCCACAGGTTGGTTTGGGACTTTCTTTTGAATTAGAGTTGTCATagttagcaaataaaaatgcaggtTCCCCAGTTACATttcaatttcagataaacaacaaataattttattacaatTATATCTGATTATGCATGG-G-catacttacatttaaaaattatttgttgtgtGTCTGGAATT-CCATTTTAACGGAGTGTCTGGTATTTTAGGGGGCA-ATCCTT--CTCT-----GGGAGCGGAAGCCCAAGGGAACAAGCT-----------CACATT-TTGCGTCTT---TGGGTCATGCCTTCTGACATCTCATTGGTCAAAGCAACTCACATGGTAAAGTTCAAGTCACAGGGTGGAA--------GAGGATACTTCTGG-gttgggtgggaggaggggagagagtaAACATTAATAAAGAATAATCTAATCTACCAAAGtagaaaatcaattattttaataatctttgtTGTGAGGCTTGGA-AAA-GACTTCTAGAAGATCAAATTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10033912 636 - 75148670 AAGCTGATTTCACATTGCTACCATGGTTGAATTAG--ACAGCTA---TTGCTGCATAGCAAGCAAGCACAAACTCTTATAGCTTATTGTAACAAGTATTTATTTATTGGTTATATATCTGTCGGTTAGTTGGGGTTTGATTGA-TTAAGGCTGGCCTTGGCTTCTGGCCACAGGTTGGTTTGGGACTTTCTTTTGAATtagagttgtcatagttagcaaataaaaatacaggttccccagttacatttcaatttcagataaacaacaaataattttattacaattatatctgattatgcatgg-g-catacttacatttaaaaattatttgttgtgtgtctggaatt-ccattttaatggagtgtctggtattttagggggca-atcctT--CTCT-----GGGAGCGGaagcccaagggaacaagct-----------cacatt-ttgcgtctt---tgggtcatgccttctgacatcccattggtcaaagcaactcgcatggcaaagttcaagtcacagggtggaa--------gaggaTACTTCTGG-GTTGGGTGGGAGGAGGGAGGAGAGTAAACATTAATAAAGAATAATCTGATCTACCAAAGTAGAGAATCAATTATTTTAATAATCTTTGTTGTGAGGCTTGGA-AAA-GACTTCTAGAAGATCAAATTA i chlSab2.chr16 C 0 C 0 s mm10.chr11 99622489 543 + 122082543 GAGTTAGTTT---ATTATGACTGTGATTGAGTTAGTTGCATTCAAATGTGGTCTATAATAAGCATCTGCAAACTCTCACCATGCACAATAATACGTGTTTATTTCTGGGTTACCTGTCTGCAGTTTA------GTTTGACTGATTTAAACCTGGGCGTGGCTTCTGGTCACAGGTTAGTGTGGGACTTCTTTAGGAATTAAGGGAGTCGTATTTCAAAAATAAAATTATCTATTTTCTAGACACATGCAAATATAGgataaacaatgaataactgtataataattgtatctgagtgtagattacc-catatttacattttcaaagtatttgttgtttatttgaagttaaaaatctaatgaattgtcctgtgttttaggtgaca-gtccta--CTCCTGCTAGAGAGAGGAGCCC-------ACAA--------------CACATTATTAAGTCTT---TA-------------------------------------------------------------------------------------------TTTGGATGGGAGAAGAG-AGAGTGTAGAGA-TAATGCAGAA-----AAATCTACTTAAGTTAAGAATCAACTATTTTAGTAATTTCTACTGGGCTGCTTACA-CAATGCCTTTTAGAGAGTGAGATCA i mm10.chr11 C 0 N 0 s canFam3.chr9 39459578 651 - 61074082 AGGCTAGTTTCTCTTTGCCGCCATGGTTGACTTAG--TCAGCTG----TAATGCATAACAAGCAACCACAAACTCTCAGAATATACAATAACAGATATTT-TTTCTTGGTCATGTGTCTGCAGGTCATTTGGGTTTTGGCTGA-TTAAGGTTGGTC-TGGCTTCTGGTAGTGGGTTAGTTTGGGACTTACTTCTGAATtagagttaccagatttagtaaataaaaatacaggtg-cccagttaaaattggatttcagataaacaaataa-atctttagtataa----gtttgaatatgcaagg-gtcatacttttatcacaattttatttgttatttatctgaaatt-aaaatttagtgaggtgtcctgtattttaattgacaGAGCCTTGGTTCT-----GATGGCATA-GCATGAGGCAGCAATGCAGTCATGCAGACATATT-tcaagtctttaatggatcatgtcctctaacatcccattggccaaagcaagtcacatggtgaagtcaaagtcacagggtgggagagTGGGTGAGGATACTTCTAGAG--GGGTGGGAAG-GGGAAGAGAGTAACCACTAATGAAGAATAATCTAATCTACCAGAGCAATGCATCAATTATTTTAGGAATCTTTGTTGTGAAGCTTGGACAAA-GACTTCTAAAAAGTCAAATTA i canFam3.chr9 I 723 C 0 e calJac3.chr5 112915947 2524 + 159171411 I e nomLeu3.chr19 48094958 0 - 81552678 C a score=31653.000000 s hg38.chr17_JH159146v1_alt 220786 18 + 278131 GATTATGTCTATTTCATT s panTro4.chr17 66343156 18 - 82630442 GATTATGTCTATTTCATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24868701 18 - 73212453 GATTATGTCTGTTTCATT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53202815 16 + 80904711 TATTATGTC--TTTCATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52767588 18 + 80997621 GATTATGTCTATTTCATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47771094 18 + 74645514 GACTATGTCTATTTCATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10034548 18 - 75148670 GATTATGTCTATTTCATT i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39460229 15 - 61074082 ---GATGTTCACTGCATT i canFam3.chr9 C 0 I 8631 e calJac3.chr5 112915947 2524 + 159171411 I e nomLeu3.chr19 48094958 0 - 81552678 C a score=524536.000000 s hg38.chr17_JH159146v1_alt 220804 285 + 278131 AGAAATTCTATTTTGGGATgggagtggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggctgatcatttgaggtcaggagttcaacaccagcctggccaacatggttaaatcctggctctactaaagatacaaaaattagctggccatggtggcaggtgcctgtaatcccagctactcaggaTAATAATCAAGTGACACAGCATATCCAAGAGCATTGCCTAGAAATCTATATTTATTAAAAACAAAACTGCCTGAGATGTTCTAGGAAGATG s panTro4.chr17 66343174 285 - 82630442 AGAAATTCTATTTTGGGATgggagtggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggctgatcatttgaggtcaggagttcaacaccagcctggccaacatggtgaaatcctgtctctactaaagatacaaaaattagctggccatggtggcaggtgcctgtaatcccagctactcaggaTAATAATCAAGTGACACAGCATATCCAAGAGCATTGCCTAGAAATCTATGTTTATTAAAAACAAAACTGCCTGAGATGTTCTAGGAAGATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24868719 285 - 73212453 AGAAATTCTATTTTGggctgggcgtggtggctcatgcctgtaatcccagtactttgggaggccgaggcgggcagatcatttgaggtcaggagttcaacaccagcctggccaacacggtgaaatcctgtctctactaaagatacaaaaattagctgggcatggtggtatgtgcctgtaatcccagctactcgggaTAATAATCAAGTGACACAGCATATCCAAGAGTATTGCCTAGAAATCTATATTTATTAAAAACAAAACTGCCTAAGATGTTCTAGGAAGATG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53202831 285 + 80904711 AGAAATTCTATTTTGggccaggcgtggtggcttgtgcctgtaatcccagcactttgggaggccaaggtgggcggatcatttgaggtcaggagttcaacaccagcctggccaacatggtgaaaccctgtctctactaaagatacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctactggggaTAATAATCAACTGACACAGCATATCCAAGAGTATTGCCTAGAAATCTATATTTATTAAAAATAAAACTGCCTAAGATGTTCTAGGAAGATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52767606 282 + 80997621 AGAAATTCTATTTTGggccaggcgtggtggcttgtgcctgtaatcccagcactttgggaggccaa---gggcggatcatttgaggtcaggagttcaacaccagcctggccaacatggtgaaaccctgtctctactaaagatacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctactggggaTAATAATCAACTGACACAGCATATCCAAGAGTATTGCCTAGAAATCTATATTTATTAAAAATAAAACTGCCTAAGATGTTCTAGGAAGATG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47771112 285 + 74645514 AGAAATTctattttgggccaggcatggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcggatcatttgaggtcaggagttcaacaccagcctggctaacatggtgaaaccctgtctctactaaagatacaaaaattagctgggcatggtggcaggtacctgtaatcccagctactcaggataaTAATCAACTGACACAGCATATCCAAGAGTATTGCCTAGAAatctatatttattaaaaataaaactgcctaAGATGTTCTAGGAAGATG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10034566 285 - 75148670 AGAAATTCTATTTTGggccaggcatggtggcttgtgcctgtaatcccagcactttgggaggccgaggtgggcagatcatttgaggtcaggagttcaacaccagcctggctaacatggtgaaaccctgtctctactaaagatacaaaaattagctgggcatggtggcaggtgcctgtaatcccagctactcgggaTAATAATCAACTGACACAGCATATCCAAGAGTATTGCCTAGAAATCTATATTTATTAAAAATAAAACTGCCTAAGATGTTCTAGGAAGATG i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39460244 8631 - 61074082 I e calJac3.chr5 112915947 2524 + 159171411 I e nomLeu3.chr19 48094958 0 - 81552678 C a score=810679.000000 s hg38.chr17_JH159146v1_alt 221089 347 + 278131 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGACTGTGGCCTAAATTCAAATATAACTGCGACTTTGTATTCTCAAGAAGATGAATCAGGAGTAGGGCTCTGTGAAGTACGGCATAAAGAGCCAAGCTTTTTTACAAGGCGGGAAAGACCAAAGACTTAGTGACTTGAAAGGATATCAGTATTTCCGGTGAATCTTGTGTGGGTCAAAGACCATTTATCTTGTTGCTTGGTGAG-------------------TGTGGCT----ACTTCCTTGAACCACATGGAGACACATTGTACAGGAAGAAGTGCCTCCTTCTGCTCGTCATCTGCGATTCTCA s panTro4.chr17 66343459 347 - 82630442 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGACTGTGGCCTAAATTCAAATATAACTGCGACTTTGTATTCTCAAGGAGATGAATCAGGAGTAGGGCTCTGTGAAGTATGGTATAAAGAGCCAAGCTTTTTTACAAGGCGGGAAAGACCAAAGACTTAGTGACTTGAAAGGATATCAGTATTTCCGGTGAATCTTGTGTGGGTCAAAGACCATTTATCTTGTTGCTTGATGAG-------------------TGTGGCT----ACTTCCTTGAACCACATGGAGACACATTGTACAGGAAGAAGTGCCTCCTTCTGCTCGTCATCTGTGATTCTCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24869004 370 - 73212453 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAGTTCCATCCATAAGACTGTGGCCTAAATTCAAATACAACTGCGACTTTGTATTCTCAAGAAGATGAATCAGGAGTAGGGCTCTGTGAAGTACAGCATAAACAGCCAATCTTTTTTACAAGGCAGGAAAGACCAAGGACTTAGTGACTTGAAAGGATATCAGTATTTCTGGTGGAGCTTGTGTAGGTCAAAGACCATTTATCTTGTTGCTTGATGAGGAACAAAGACCATTTATCTTGTTGCTTGTCACTTCCCTGAACCACATGGAGACACACTGTTTGGGAAGAAGTGCCTCCTTCTGCTCATCATCTGCAATTCTCG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48094958 344 - 81552678 ccAAGAAGAGTCCAAGCCCATGACCTTCTCATCAACTCCTTGCTGAGTGCAATCCCATCCATAAGACTGTGGCCTAAATTCAAATACAACTGTGACTTTGTATTCTCAAGAACATGAATCAGGAGTAGGGCTCTGTGAAGTATGGCATAAAGAGCCAAGCTTTTTTACAAGGCGGGAAAGACCAAAGACTTAGTGACTTAAGAGGGTATCAGTATTTCTGGTGGAGCTTGTGTGGGTCAAAGACCATTCATCTTGTTGCTTGATGAG-------------------GGTGGCT----ATGTCCCTGAACCACATGGAGACACATTGTACGGGAAGAAGTGCCTC---CTGCTTGTCATCTGCAATTCTCG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53203116 347 + 80904711 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGAATATGGCCTAAATTCAAATACAACTGCGACTTTGTATTGTCTAGAAGATGAATCAGGAGTAGGGCTCTGTGAAGTATAGCATAAAGAGCCAAGTTTTTTTACAAGATGGGAAAAACCAAGGACTTAGTGACTTGAGAGGATATCAGTATTTCTGGTGGAGCTTTGGTGGGTCAAAGACCATTCATCTTGCTGCTTGATGAG-------------------GGTGGCT----ACTTCCCTGAACCTCATGGAGACACACTGTACGGGAAGAAGTGCCTCCTCCTGCTTGTCATCTGCAATTCTCG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52767888 347 + 80997621 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGAATATGGCCTAAATTCAAATACAACTGCGACTTTGTATTGTCTAGAAGATGAATCAGGAGTAGGGCTCTGTGAAGTATAGCATAAAGAGCCAAGTTTTTTTACAAGATGGGAAAAACCAAGGACTTAGTGACTTGAGAGGATATCAGTATTTCTGGTGGAGCTTTGGTGGGTCAAAGACCATTCATCTTGCTGCTTGATGAG-------------------GGTGGCT----ACTTCCCTGAACCTCATGGAGACACACTGTACGGGAAGAAGTGCCTCCTCCTGCCCGTCATCTGCAATTCTCG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47771397 347 + 74645514 CCAAGAAGTATCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGAATATGGCCTAAATTCAAATACAACTGCGACTTTGTATTCTCAAGAAGATGAATCAGGAGTAGGACTCTGTGAAGTATAGCATAAAGAGCCAAGtttttttACAAGACGGGAAAAACCAAGGACTTAGTGACTTGAGAGGATATCAGTATTTCTGGTGGAGCTTTGGTGGGTCAAAGACCATTCATCTTGCTGCTTGATGAG-------------------GGTGGCT----ACTTCCCTGAACCACATGGAGACACACTGTATGGGAAGAAGTGCCTCCTCCTGCTCGTCATCTGCAATTCTCG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10034851 347 - 75148670 CCAAGAAGAGTCCAAGGCCATGACCTTCTCATCAACTCCTTGCTGGGTGCAATTCCATCCATAAGAATATGGCCTAAATTCAAATACAACTGCGACTTTGTATTCTCAAGAAGACGAATCAGGAGTAGGGCTCTGTGAAGTATAGCATAAAGAGTCAAGTTTTTTTACAAGACGGGAAAAACCAAGGACTTAGTGACTTGAGAGGATATCAGTATTTCTGGTGGAGCTTTGGTGGGTCAAAGACCTTTCATCTTGCTGCTTGATGAG-------------------GGTGGCT----ACTTCCCTGAACCACACGGAGACACACTGTATGGGAAGAAGTGCCTCCTCTTGCTCGTCACCTGCAGTTCTTG i chlSab2.chr16 C 0 C 0 e canFam3.chr9 39460244 8631 - 61074082 I e calJac3.chr5 112915947 2524 + 159171411 I a score=942166.000000 s hg38.chr17_JH159146v1_alt 221436 281 + 278131 TCTGACACCATGGTCAGCTTCTGTTGTAGCTCTGTCTGCTCTGAATAGAGCTGTGGCCAAGGCCTCTGCCAGACctgctgctgctgcagttgctgcCAGACCACCTACTGCAGAACCATCTGCTACCATCCCAGCTGCTCTGTGTCCAGCTGTTGCAGGCCCCCGTGCTG-----CCAGTCCCTGTGCTGC------------------CCCAGCTGCTGCATT------------------------------TCTAG---------------------------------------------CTGCTGCCACTCAAGCTGCAGTGTGTCCAC---------------CTGCTCCAGGCCCAGCTGTTATAATCCCCAGTACTACCAGCCctc s panTro4.chr17 66343806 281 - 82630442 TCTGACACCATGGTCAGCTTCTGTTGTAGCTCTGTCTGCTCTGAATAGAGCTGTGGCCAAGGCCTCTGCCAGACCTGCTGCTGCCCCAGTTGCTGCCAGACCACCTACTGCAGAACCATCTGCTACCATCCCAGCTGCTCTGTGTCCAGCTGTTGCAGGCCCCAGTGCTG-----CCAGTCCCTGTGCCGC------------------CCCAGCTGCTGCATT------------------------------TCTAG---------------------------------------------CTGCTGCCGCTCCAGCTGCAGTGTGTCCAC---------------CTGCTCCAGGCCCAGCTGTTATAATCCCCAGTACTACCAGCCCTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24869374 284 - 73212453 TCTGACACCATGGTCAACTTCTGTTGTGGCTCTGTCTACTCTGAACAGAGCTGTGGCCAAGGCCTCTGCCAGACCTGCTGCTGCCCCAGCTGCTGCCAGACCACCTGCTGCAGAACCACCTGCTACCATCCCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCCCAGTGTTG-----CCTGTCCCTGTGCTGCCAG---------------CCCACctgctgctgc------------------------------cccag---------------------------------------------ctgctgccactccagctactgtgtgtccag---------------ctgcttcaggcccagctgttataatccccagtgctgccagccctc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48095302 299 - 81552678 TCTGATACCATGGTCAGCTTCTGTTGTGGCTCTGTCTGCTCTGAACAGAGCTGTGGCCAAGGCCTCTGCCAGACCTGCTGCTGCCCCAGCTGCTGCCAGACCACCTGCTGCAAAACCACCCACTATCATCCCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCCCGGTGCTG-----CCAGTCCCTGTGCTGCCAGCCCACCTGCTGCTGCCCCAGCTGTGGCATT------------------------------TCTAG---------------------------------------------CTGCTGCCGCCCCAGCTGCTGTGTGGCCAG---------------CTGCTCCAGGCCCAGCTGTTATAAACCCCAGTGCTGCCAGCCTTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53203463 299 + 80904711 TCTGACACCATGGTCAGCTTCTGTTGTGGTTCTGTCTGCTCTGAACAGAGCTGTGGCCAAGGCCTCTGCCAGACGTGCTGCTGCCCCAGCTGCTGCCAGATCACCTGCTGCAGAACGACTCGCTACCATCCCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCGTGGTGCTG-----CCAGTCCCTGTGCTGCCAGCCCACCTGCTGCTGCCCCAGCTGCCACATT------------------------------TCTAG---------------------------------------------TTGCTGTCGCCCCAGCTGCTGTGTGTCCAG---------------CTGCTCCAGGCCCAGCTGTTATAATCCCCAGTGCTGCCAATCCTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52768235 299 + 80997621 TCTGACACCATGGTCAGCTTCTGTTGTGGTTCTGTCTGCTCTGAACAGAGCTGTGGCCAAGGCCTCTGCCAGACGTGCTGCTGCCCCAGCTGCTGCCAGATCACCTGCTGCAGAACGACTCGCTACCATCCCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCGCGGTGCTG-----CCAGTCCCTGTGCTGCCAGCCCACCTGCTGCTGCCCCAGCTGCCACATT------------------------------TCTAG---------------------------------------------CTGCTGCCGCCCCAGCTGCTGTGTGTCCAG---------------CTGCTCCAGGCCCAGCTGTTATAATCCCCAGTGCTGCCAATCCTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47771744 299 + 74645514 TCTGACACCATGGTCAGCTTCTGTTGTGGTTCTGTCTGCTCTGAACAGAGCTGTGGCCAAGGCCTCTGCCAGACGTGCTGCTGCCCCAGCTGCTGACAGATCACCTGCTGCAGAACGACTCACTACCATCCCAGCTGCTGTGTGTCCAGGtgctgcaggccgcggtgctg-----ccagtccctgtgctgccagcccacctgctgctgccccagctgccacatt------------------------------tctag---------------------------------------------ctgctgccgccccagctgctgTGAGTCCAG---------------CTGCTCCAGGCCCAGCTGTTATAATCCCCAGTGCTGCCAATCCTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10035198 299 - 75148670 TCTGACACCATGGTCAGCTTCTGTTGTGGTTCTATCTGCTCTGAACAGAGTTGTGGCCAAGGCCTCTGCCAGACGTGCTGCTGCCCCAGCTGCTGCCAGATCACCTGCTGCAGAACGACTCGCTACCATCCCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCGCGGTGCTG-----CCAGTCCCTGTGCTGCCAGCCCACCTGCTGCTGCCCCAGCTGCCACATT------------------------------TCTAG---------------------------------------------CTGCTGCCACCCCAGCTGCTGTGTGTCCAG---------------CTGCTCCAGGCCCAGCTGTTGTAATCCCCGGTGCTGCCAATCCTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46181641 320 - 159171411 TCTAACACCATGGTCAGCTCCTGTTGTGGTTCTGTCTGCTCTGACCAGGGCTGTGGCCTGG---------AGACCTGCTGCCGCCCCAGCTGCTGCCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGTTGCTGTGTGTCCAGCTGCTGCAGACCCCAGTGCTG-----CCAGTCTGTGTGCTGCCAGCCCACctgctgccgccccagctgctgcatctccagctgctgccgcccctcttgctgtgaatccag---------------------------------------------ctgctgccgccccagctgctgtgtgtccag---------------ctgctgcaggccccagtgctgccagtctgtgtgctgccagcccac i calJac3.chr5 n 2524 C 0 s canFam3.chr9 21556382 350 + 61074082 TCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTCTGCTCTGAGCAGGGCTGTGGCCAGG---------AGACCTGCTGCCGCCCCACCTGCTGCCAGACCACCTGCTGCAGGACCACctgctgccgcccaagctgctgtgtgtccagctgctgccgcccctcctgctgtggttccagtggctgtggctccag-----ctgctgcaggcccagctgctgcatc------------------------------tctagctgctgccgccccacctgctgcCAGACCACCTGCTGCAGGACCACctgctgccgccccagctgctgtgtgtctagctgctgccgcccctcctgctccagttccagctgctgtggctccagctgttgccgcccctc i canFam3.chr9 n 8631 T 31290 a score=325084.000000 s hg38.chr17_JH159146v1_alt 221717 98 + 278131 ctgctgccaccct-tctgctgcacttctagctgctgccaccctggctgctgtgtgtccagctgctgctgTCCAG---------------TCTGCTACCAGACCACCTGCTGTGG s panTro4.chr17 66344087 98 - 82630442 CTGCTGCCACCCT-TCTGCTGCACTTCTAGCTGCTGCCACCCTGGCTGCTGTGTGTCCAGCTGCTGCTGTCCAG---------------TCTGCTACCAGACCACCTGCTGTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24869658 98 - 73212453 ctgctgccgccct-tctgctgcacttctagctgctgccaccccggctgctgtgtgtccagctgctgcCATCCAG---------------TCTGCTGCCAGACCACCTGCTGTGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48095601 98 - 81552678 CTGCTGCCACCCT-TCTGCTGCACTTCTAGCTGCTGCCACCCCGGCTGCTGTGTGTCCAGCTGCTACCGTCCAG---------------TCTGCTCCCAGACCACCTGCTGTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53203762 98 + 80904711 CTACTGCCGCCCT-TTTGCTGCACTTCTAGCTGCTGCCACCCTGGCTGCTGTGTGTCCAGCTGCTGTCATCCAG---------------TCTGCTGCCAGACCACCTGCTGTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52768534 98 + 80997621 CTACTGCCGCCCT-TTTGCTGCACTTCTAGCTGCTGCCACCCTGGCTGCTGTGTGTCCAGCTGCTGTCATCCAG---------------TCTGCTGCCAGACCACCTGCTGTGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47772043 98 + 74645514 CTACTGCCGCCCT-TTTGCTGCACTTCTAGCTGCTGCCACCCTGGCTGCTGTGTGTCCAGCTGCTGTCATCCAG---------------TCTGCTGCCAGACCACCTGCTGTGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10035497 98 - 75148670 CCACTGCTGCCCT-TTTGCTGCACTTCTAGCTGCTGCCACCCTGGCTGCTGTGTGTCCAGCTGCTGTCATCTAG---------------TCTGCTGCCAGACCACCTGCTGTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46181961 99 - 159171411 ctgctgccgccccagctgctgcatctccagctgctgccgcccctcttgctgTGAATCCAGTTGCTGCCGTCCCA---------------GATGCTGCCAGACCACCTGCTGCAG i calJac3.chr5 C 0 I 43331 s canFam3.chr9 21525442 111 + 61074082 CTGCTGC--CTCA-GCTGCTATGTGTCCAGCTGCTGCCACCTTTCCTGCTATGGCTCCAGCTGCTTCTGCCCAGCATGCTATCAGATCCCCTGCTGCCATACCACCTTCTGTTG i canFam3.chr9 T 31290 C 0 a score=1878211.000000 s hg38.chr17_JH159146v1_alt 221815 707 + 278131 TCCAGTCTCCTATGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGGTTCAACCACCTTGTTGTCAGTGTACCAG--TCATTCTCATTCCCCTTCTCCACTGGACCTGGCCTTGCCCTGATCCACCACTACATTTATATAGCTCATTGTTCATTCCACCAAGCAACTATTTTAAAAGCAAAAATTTAAA-TGCATATCGTACAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGATGACCAG-ATATCTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAATTGCCGAGTGTGGTCTGGACTTTGCAATGAATTACGTCTGGTAGAGTAACTATATCTCAATAAA----CACTCTCTTGGTATCAAAAACATTTGTGACCTTTCAGTATTTCTTACTGTTGATTATTTATTTGTAAAATGGTTTGAGTTCCTATTGTATGGGCAATAACAAAAAAAT-TGATATTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATGCCAAATAATTCATTTTTTA-ATCCAAAACAGATTGCTCACTTTACCTGCCATCAAGTTTATTGAGACAAAACAAGAACTCAATTTTTACTGTAATTAAATTAAGAACAAATTAGCAA-----------GCTATTGGGCTCTGGGAATTGCATAAAATGAATGAGACCCACTTCTTTTCCCTTAGGTAACTCACAACATAATCATGGAttt s panTro4.chr17 66344185 707 - 82630442 TCCAGTCTCCTATGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGGTTCAGCCACCTTGTTGTCAGTGTACCAG--TCGTTCTCATTCCCCTTCTCCACTGGACCTGGCCTTGCCCTGATCCACCACTACATTTATATAGCTCATTGTTCATTCCACCAAGCAACTATTTTAAAAGCAACAATTTAAA-TGCATATCTTACAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGATGACCAG-ATATCTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAATTGCCGAGTGTGGTCTGGACTTTGCAATGAATTACGTCTAGTAGAGTAACTATATCTCAATAAA----CACTCTTTTGGTATCAAAAACATTTGTGACCTTTCAGTATTTCTTACTGTTGATTATTTATTTGTAAAATGGTTTGAGTTCCTATTGTATGGGCAATAACAAAAAAAT-TGATATTATATGTATCAGCCAAAGCCCGTATTAGAGAAAATGCCAAATAATTCATTTTTTT-ATCCAAAACAGATTGCTCATTTTACCTGCCATCAAGTTTATTGAGACAAAACAAGAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GCTATTGGGTTCTGGGAATTGCATAAAATGAATGAGACCCACTTCTTGTCCCTTAGGTAACTCACAACATAATCATGGAttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24869756 704 - 73212453 CCCAGTCTCCTATGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGTTTCAACCACTATGTTGTCAGTGCACTAG--TCATTCTCATTCCCCTTCTCCACTGGACCTGGCCCTGCTCTGATCCACCACTACATTTATATAGCTCATTGTTCATTCCACCAAGCAACTATTTTAAAAGCAACAATTTAAA-TGAATATCTTACAAAACCTCCAACTTCCATGC--------TTGGTGTGCAGTCAGATGACCAG-ATGTCTCACACTATTTCACTGGAATAGGCTTCTAAGCTTACAATTGCTGAGTGTCGTCTGGACTTTGCAATGAATTACATCTGGTAGAGTAACTATATCTCAATAAA----TACTCTCCTGGTATCAAAAATATTTGTGACCTTTCAGTATT--TTACTGTTGATTATTTATTTGGAAAATGGTTTGGGTTCCTACTGTATGGGCAATTA-AAATAAAT-TGTTATTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATGCCAAATAATTCATTTTTTT-ATCCAAAACAGATTGCTCACTTTACATGCCATCAAATTTATTGAGACAAAACAAGAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GCTATTGGGCTCTGGGAATTGCATAAAATGAATGAGACCCACTTCTCATCCCTCAGGTAACTCACAATAAAATCGTGTGGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48095699 707 - 81552678 CCCAGTCTCCTATGAATCCTCTTGCTATTGAACTTCATTCCTGACCACCAGCCCTGGTTCAACCACCATGTTGTCAGTGTACCAG--TCATTCTCATTCCCCTTCTCCACTGGACCTGGCCTTGCTCTGATCCACCACTACATTTATGTAGCTCATTGTTCATTCCATCAAGCAACTATTTTAAAAGCAACAATTTAAA-TGAATATCTTACAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGATGACCAG-ATATTTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAATTGCTGAGTGTGGCCTGGACTTTGCAATGAATTACGTCTGGTAGAGTAACTATATCTCAATAAA----TACTCTCTTGGTATCAAAAACATTTGTGACCTTTCAGTTCTTCTTAGTGTTGATTATTTATTTGGAAAATGGTTTGGGTTCCTATTGTATGGGCAATAACAAAAAAAT-TGATGTTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATGCCAAATAATTCATTTTTTT-ATCCAAAACAGATTGCTCACTTTACCTGCCATCAAGTTTATTGAGACAAAACAAGAAGTCAATTTTTACTGTAATTAAATTAAGACCCAATTAGCAA-----------GCTATTGGGCTCTGGGAATTGCATAAAATGAATGAGACCCACTTCTCATCCCTCAGGCAACTCACAATAAAATCGTGGATTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53203860 700 + 80904711 CCCAGTCTCCTGTGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGTCCTGGTTCAACCACCATGTTGTCAGTGTACTAG--TCATTCTCCTTCCTCTTCTCCACTGGACCTGGCCTTGCTGTGATCCACCACTACAAATATATAGCTAA-------TTCCACCAAGCAACCATTTTAAAAACAACAATTTAAA-TGAATATCTTACAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGAAGACCAG-CTATCTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAACTGCTGAGTGTGGTCTGGACTTTGCAATGAATTATGTCTGGTAGAGTAACTATAGCTCAATAAA----TACTCTCTTGCTATCAAAAACATTTGTGACCTTTCAGTATTTCTTAGAGTTGATTATTTATTTGGAAAACTGTTTGGGTTTCTATAGTATGGACAATAACATAAAAAA-TGATACTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATATCAAATAATTCATTTTTTT-ATCCAAAACAGATTGCAGACTTTACCTGCCATCAAGTTTATTGAGACAAAACAATAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GCTATTGGGATCTGGGAATTGCATAAAATGAATGATACCCACTTCTCGTCCCTCAAGTAACTCACAATAAAATCGTGGGTtt i rheMac3.chr16 C 0 I 321 s macFas5.chr16 52768632 700 + 80997621 CCCAGTCTCCTGTGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGGTTCAACCACCATGTTGTCAGTGTACTAG--TCATTCTCCTTCCTCTTCTCCACTGGACCTGGCCTTGCTGTGATCCACCACTACAAATATATAGCTAA-------TTCCACCAAGCAACCATTTTAAAAACAACAATTTAAA-TGAATATCTTACAAAACCTCCAACTTCTATGC--------TTCGTGTGCAGTCAGAAGACCAG-CTATCTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAACTGCTGAGTGTGGTCTGGACTTTGCAATGAATTATGTCTGGTAGAGTAACTATAGCTCAATAAA----TACTCTCTTGCTATCAAAAACATTTGTGACCTTTCAGTATTTCTTAGAGTTGATTATTTATTTGGAAAACTGTTTGGGTTTCTATAGTATGGACAATAACATAAAAAA-TGATACTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATATCAAATAATTCATTTTTTT-ATCCAAAACAGATTGCAGACTTTACCTGCCATCAAGTTTATTGAGACAAAACAATAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GCTATTGGGATctgggaattgcataaaatgaatgatacccacttctcgtccctcaagtaactcacaataaaatcgtgggttt i macFas5.chr16 C 0 I 13 s papAnu2.chr16 47772141 706 + 74645514 CCCAGTCTCCTGTGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGGTTCAACCACCATGTTGTCAGTGTACTAg--tcattctccttcctcttctccactGGACCTGGCCTTGCTCTGATCCACCACTACATTTATATAGCTAATTGTTCGTTTCACCAAGCAACCATTTTAAAAGCAACAATTTAAA-TGAATATCTTACAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGAAGACCAGAATATCTCACACGATTTCATTGGAACAGGTTTCTAAGCTTACAACTGCTGAGTGTGGTCTGGACTTTGCAATGAATTACGTCTGGTAGAGTAACTATAGCTCAATAAA----TACTCTCTTGGTATCAAAAACATTTGTGACCTTTCAGTATTTCTTACAGTTGattatttatttggaaaactgtttgggtTTCTATTGTATGGACAATAACACAAAAAAGTGATACTATATGTATCAGCCAAAGCCTGTATTAGAGAAAAtgtcaaataattcattttttt-atccAAAACAGATTGCACACTTTACCTGCCATCAAGT---TTGAGACAAAACAATAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GTTATTGGGCTCTGGGAATTGCATAAAATGAATGAGACCCACTTCTCATCCCTCAAGTAACTCACAATAAAATCgtgggttt i papAnu2.chr16 C 0 I 10 s chlSab2.chr16 10035595 709 - 75148670 CCAAGTCTCCTGTGAATCCTCTTGCTGTTGAACTTCATTCCTGACCACCAGCCCTGGTTCAACCACCATGTTGTCAGTGTACTAG--TCATTCTCCTTCCTCTTCTCCACTGGACCTGGCCTTGCTCTGATCCACCACTACATTTATATAGTGAATTGTTCATTCCACCAAGCAACCATTTTAAAAGCAACAATTTAAA-TGAATATCTTGCAAAACCTCCAACTTCTATGC--------TTGGTGTGCAGTCAGAAGACCAGCATATCTCACACTATTTCATTGGAACAGGCTTCTAAGCTTACAACTGCTGAGTGTGGTCTGGACTTTGCAACGAATTACGTCTGGTAGAGTAACTATAGCTCAATAAA----TACTCTCTTGGTATCAAAAACATTTGTGACCTTTCAGTATTTCTTACAGTTGATTATTTATTTGGAAAACTGTTTGGGTTTCTATTGTATGGACAATAGCATAAAAAA-TGATACTATATGTATCAGCCAAAGCCTGTATTAGAGAAAATGTCAAATAATTCATTTTTTTAATCCAAAACAGATTGCAGACTTTACCTGCCATCAAGTTTACTGAGACAAAACAATAACTCAATTTTTACTGTAATTAAATTAAGAACCAATTAGCAA-----------GCTATTGggctctgggaattgcataaaatgaatgatacccacttctcgtccctcaagtaactcacaataaaatcgtggattt i chlSab2.chr16 C 0 I 12 s canFam3.chr9 21525553 716 + 61074082 CCAAATATGCTGTGGATCCTCTTATTGTTGAAATTTGCTCTTCACCACCAGCCCTGAATTAAACACCATCATGCCAATATATTGGTATTGTTCTCATTTCTTTTGTCCACAGCATCTGGCCCTGTTCTGATTTGTCACTATATTTATTTATCCCATTGGTTATGCCACCAACCAACTATTTAAAGAGCAACAATCTAAACTAAATACCACACAGACCCTCCAAGTTCTATGCCTATTTCTTTGGCATTCAGTCAA---------ATGTCT-ACACTACTTCATGGGGACAGGCTCCTAATCTTATGATTGCTGTGCATGGCTTGGCCTTTACAATGAATCATGTGTGACAGAATAACTATGTCTCAATAAATACTTACTCTCTTGGTGTCAGAAACATTTGTGGTCCTTAATTATTTTTTAATGTTGGTTA-TGAACTGGAGATAAGTTTGAGCTTCTCTCAGGCAAACA-----AAGAAAAC-TAATTTTGCACATATCAATCAAAGCCTATGTTAGAGAAAATG-CAAATAATTAAATTTCCC--CCAAAATCATATTATCCACCTTACCTGTCAACAAGTTTATGGAGAGAAAACAAGAATGTCTTTTTATTAGAAATTGAATTATAGACCACCTAGCAAGGTTTTTGTGTGCTATTGGGCTCTGGGAAGTACACATGCTATATGAGATCCAGTTCCCATCCCTCATGTAGTTCACAATGGAATCTTGAATTT i canFam3.chr9 C 0 I 3457 e calJac3.chr5 46182060 43331 - 159171411 I a score=8166434.000000 s hg38.chr17_JH159146v1_alt 222522 3462 + 278131 ttttttttt-------------------ttttt----gagatggggtttcgctcttgtttcccaggctggagtgcagtggcatgatctcagctcatggcaacctctgcctctcgggttcaagtgattctcttgcctcagcctcccaagtagctgggattacaggcatgaaccaccatgcccggctaattttgtatttttagtagagacggggtttcttcatgttcatcaggctggtcttgaactcctgaactgaggtgatccacctgcctcggcctcctaaagtgctggtattacaggcttgagccaccacacgtggtcTGAAAGTTATTTTTCTTTCCTTTCCCTCTCCACTCAATTAATTC------------------------------------------------AATTAATCATGAATTTAATTTAAATGCATATGTCAGGGAGAGTATgttggtaatattagtgagaaaaaggactctattctattggagaaaagtaatacatacgtaaggattgattcatagaaataaaatgtgtcaattctgaaaattcaggttaacatgcacaggtcTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATATTTATATCTTTATGAAGGGTAGTCTTATTAAAAAGACATTTAAAAAATTATAGTCCTTTTAAGGAGGAGGGATATGTCAAGATTAATTCATGGTGAGTTCTATGGAAAAATAAGAGGCATAATTTTAGGCTGAAGCCATAGAGTCAGTGGGAAAATCAGCGAGCATGAGTGATGAAACACGTCATTATGGGAAAGAAAGTGATGGAAACCAAATTGGAATTGCAGATGAGTTCTATTTTTGAGATGCTTCACTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAGCTCCAATTGCAGAATTTGCATGCAGGTCTACCTATGAGACATGCAAAGGTTAGGGCTCACTCCACATGACCTGGATCAAGTCACCCAGCTACCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATTGGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAGAGCTCTAGGCAAAACTTTTAGCTGAAGAGGAAAATAAAAAAGTAAAGTAAGCACAAAACTCAAAACAACATATTCAGAAATTGATATGGTAATGCGACGTGAGAATCGTATCTTTGGGCTCAGGCATCCCTCTTCAATTTATTCCAGGACCATAAATGGTCTATACAAGCTGTTTCTCGTTTCAGTATTGCTTAAGTACCTAGGCCTGAGAAATCTATCAGAGCCTCAAACTAGTAATGATGCCTATTCTGTCATATCTGCATATTGCAAAACTGTATTTGTTTTATTCATTTCTATGATCTCTTCTATGGCACATAAACATTTATAAATATGTTATCTTCATTTTTGAAttttttcc---tttttttaaaagacaggatctggctctgtcacctaagttggtgtgcagtggcaccatgtcagctcactgcaaaattcaactccacggctcaagccaacctcccctagctacttcagcctcccaagtagctaggaccgcaggcatgcaccaccatgtctagttaatttttgtattttttgtggagacagggtctcactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccacctcggtctcccaaagtgctgggattacaggtgcaagccaccacacccACTTTATTACCAGAAAATATAGGTATTGTTACCCCA-TTTTTTAATTTGCCTACCACTTGTGTATTCTTTGCTA-TTTTTATCCCCTACCACTTTTAGAATAT----ATTT------GAATCTTTTTAAATTTTATCAGCTTCATCTCTCAGAACCATTATTTTATGCATGACATCTATACTGTAATGgaattctttattttgacttgtatttcagtcaatgggaatatttcttaaaggaattttaaagggaagttatatatcccgagtccttgaatctatgaggaaatctttccattgccttcacacatgaccaatagcttgtgtggatcaaaatAacagggtctgattctgtcacctaagctggagtgtggtggcacc-atttcagctc-actgcaagctccaactcctggactcaagccatcctgccacctcagcctcccaagtagctgggaccacaggcatgcCACAATTTTTTTTGCCCTTCAATGCAGTTTAGGCGTGAATAAAATATTGGAAAATAAAATTAACCTTCAGGATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTCACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGGAACACTTAAGGGGGAGTGTATATATGAGATACTAAGTCTAATTTTAACAGTTTAGTAATAGCAGGTCCTT-AAAATGTCAGAAAATTAACTTTTATGTCCTCTTATCCTCTTTGAATCCATTATGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAACCCTCATCTTACTTTCTCAGGACAGGAGACAATAGCAGATAAGAAAGTGTAGCAAATTTGGGGCAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATACAGAGAGAGTACCACAGAGTGTAAAGTTGGTTTTCCTTgaatcctcagaaa----------ggctcagaacccg-------------------------------gagtcaccaggtaatacacctgaaggcagggtaggcagcaggatgcttcgacccctggatccctaccccaccctacaaagttggtcattaggcctcccccacttccaaccaggagaaacaag-ggttatcttccagaaaatttagtgacagagactccagatttgggaatactaaagtgaacaaaagtcaagaatagaacagaaaacagactcatgcagtgaaaatctgagcactgTGctcagcatccagga--ctgatggccataagctttccaagcaggatattggaagattctcctctaaagaaacta-----------------aacaTATAAATCTTGACTTCTTTTTTGTGGATGAAGGGGAGGAGAGgtgaagagatcaattaacaagccctgctgtccacacagaactttcaattggctttttagtgccatgttaaccaatatgcttcagacacttgggaaatgtctccagcctgacaattcacactaatttaaaaagaa-aaaaagaaaaagggggaaaaacaaatttgacaggaatagaaactacagggagcagaatagaact-aaaaaattgtaaaacaagaactattgtaaataaaatactcaagagagctaagagaagaaattc--tgtttgaaataaaaacaagattctaagaaacaggagcagtcagagaagttgagtgaaagcttgagaattaaaatgtgatagaaaaaattagaaaaacgttcagtaaaatgtttggaaggtaaagtagaacaaGGAGTCAAATAATTTGTTCTCCTGTCTTGAAGATATGT-AAAAAAAAT---T s panTro4.chr17 66344892 3466 - 82630442 ttttttttt-------------------tttttttttgagatggggtttcactcttgtttcccaggttggagtgcagtggcatgatctcagctcacggcaacctctgcctctcgggttcaagtgattctcttgcctcagcctcccaagtagctgggattacaggcatgaaccaccatgcccggctaattttgtatttttagtagagacggggtttcttcatgttcgtcaggctggtctcgaactcctgaactgaggtgatccgcctgcctcggcctcctaaagtgctggtattacaggcatgagccaccacacctggtcTGAAAGTTATTTTTCTTTCCTTTCCCTCTCCACTCAATTAATTC------------------------------------------------AATTAATCATGAATTTAATTTAAATGCATATGTCAGGGAGAGTATTTTggtaatattagtgagaaaaaggactctattctattagagaaaagtaatacatacgtaaggattgattcatagaaataaaatgtgtcaattctgaaaattcaggttaacatgcacaggtcTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATATTTATATCTTTATGAAGGCTAGTCTTATTAAAAAGACATTTAAAAA-TTATAGTCCTTTTAAGGAGGAGGGATATGTCAAGATTAATTCATGGTGAGTTCTATGGAAAAATAAGAGGCATAATTTTAGGCTGAAGCCATACAGTCAGTGGGAAAATCAGCGAGCATGAGTGATGAAACACGTCATTATGGGAAAGAAAGTGATGGAAACCAAATTGGAATTGCAGTTGAGTTCTATTTTTGAGATGCTTCACTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAGCTCCAATTGCAGAGTTTGCATGCAGGTCTACCTATGAGACATGCAAAGGTTAGGGCTCACTCCACATGACCTGGATCAAGTCACCCAGCTACCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATTGGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAGAGCTCTAGGCAAAACTTTTAGCTGAAGAGGAAAATAAAAAAGTAAAGTAAGCAAAAAACTCAAAACAACATATTCAGAAATTGATATGGTAATGCGACGTGAGAATCGTATCTTTGGGCTCAGGCATCCCTCTTCAATTTATTCCAGGACCATAAATGGTCTATACAAGCTGTTTCTCATTTCAGTATTGCTTAAGTACCTAGGCCTGAGAAATCTATCAGAGCCTCAAACTAGTAATGATGCCTATTCTGTCATATCTGCATATTGCAAAACTGTATTTGTTTTGTTCATTTCTGTGACCTCTTCTATGGCACATAAACATTTATAAATATGTTATCTTCATTTTTGAAttttttcc---tttttttaaaagacaggatctggccctgtcacctaagttggagtgcagtggcaccatgtcagctcactgcaaaattcagctccatggctcaagccaacctcccctagctacttcagcctcccaagtagctaggactgcaggcatgcaccaccatgtctagctaatttttgtattttttgtaaagacagggtctcactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccacctcggtctcccaaagtgctgggattacaggtgcgagccaccacacccACTTTATTACCAGAAAATATAGGTATTGTTACCCCA-TTTTTTAATTTGCCTACCACTTGTGTATTCTTTGCTATTTTTTGTCCCCTACCACTTTTAGAATAT----ATTT------GAATCTTTTAAAAttttatcagcttcatctctcagaaccattattttatgcatgacatctatactgtaatggaattctttattttgacttgtatttcagtcaatgggaatatttcttaaaggaattttaaagggaagttatatatcccgagtccttgaatctatgaggaaatctttccattgccttcacacatgaccaatagcttgtgtggatcaaaatAacagggtctggttctgtcacctaagctggagtgtggtggcacc-atttcagctc-actgcaagctccaactcctggactcaagccatcctcccacctcagcctcccaagtagctgggaccacaggcatgcCACAA-TTTTTTCACCCTTCAATGCAGTTTAGGCGTGAATAAAATATTGAAAAATAAAATTAACCTTCAGGATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTCACCAACATCTGGAGCATGGGAACTAGTTTACTTCAGGAACATTTAAGGGGGAGTGTATATATGAGATACTAAGTCTAATTTTAACAGTTTAGTAATAGCAGGTCCTT-AAAATGTCAGAAAATTAACTTTTATGTCCTCTTATCCTCTTTGAATCCATTATGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAACCCTCATCTTACTTTCTCAGGACAGGAGACAATAGCAGATAAGAAAGTGTAGCAAATTTGGGGCAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATGCAGAGAGAGTACCACAGAGTGTAAAGCTGGTTTTCCTTgaatcctcagaaa----------ggctcagaacccg-------------------------------gagtcaccaggtaatacccctgaaggcagggtaggcagcaggctgctttgacccctggatccctaccccaccctacaaagttggtcattaggcttcccccacttccaaccaggagaaacaag-ggttatcttccagaaaatttagtgacagagactccagatttgggaatactagagtgaacaaaagtcaagaatagaacagaaaacagactcatgcagtgaaaatctgagcactgtgctcagcatccaggactctgatggccataagccttccaagcaggatattggaagattctcctctaaagaaacta-----------------aacatataaatcttgacttcctttttgtggatgaaggggaggagaggtgaagagatcaattaacaagccctgctgtccacacagaactttcaattggctttttagtgccatgttaaccaatatgctgcagacactttggaaatgtctccagcctgacaattcacagtaatttaaaaagaa-aaaaagaaaaagggggaaaaacaaatttgacaggaatagaaactacagggagcagaatagaact-aaaaaattataaaacaagaactattgtaaataaaatactcaagagagctaagagaagaaat----tgtttgaaataaaaacaagattctaagaaacaggagcagtcagagaagttgagtgaaaccttgagaattaaaatgtgatagaaaaaattagaaaaacgttcagtaaaatgtttggaaggtaaagtagaacaagaagtcaaataatttgttctcctgtcttgaagatatgtaaaaaaaaat---t i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24870460 3478 - 73212453 TTTTTTGTC------GGGGGGGATGGGGttttt----gagatggggtttctctattgtttcccagactggagtgcagtggcatgatctcagctcacggcaacctctgcctcccaggttcaagtgattctcttgcctcagcctcccaagtagctgggattacaggcatgaaccaccatgcctggctaattttgtatttttagtagagacggggtttctccatgttcatcaggctggtcttgaactcctgacctgaggtgatccgcctgcctcggcctcccaaagtgctggtattataggcatgagccaccacgcctggACTGAAGGTTATTTTTCTTTCCTTTCCCTCTCCACTCAATTAATTC------------------------------------------------AATTAATCATGGATTTAATTTAAATGCATATGTCAAGGAGAGTATGTTGGTAATATTAGTGAGAAAAAGGACTCTTTTCTATTGAAGAAAAGTAATACATACGTAAGGATTGATTCATAGAAATAAAATGTGTCAATTCTGAAAATTCAGGTTAACATGCACAGGTCTCAAACACATAAGATTATGTGAAAGAGAATCAGATCACAGCCAAATGTTTATATCTTTATGAAGGGTAGTATTATTAAAAAGACATTTTAAAAATTATAGTCCTTTTAAGGAGGAGGGATATGTCAAGATTAATTCATGGTGAGCTCTATGGAAAAATAAGAGGCATAATTTTAGGCTGAAGCCATAGAGTCAGTGGGAAAATCAGCGAGCATGAGTGATGAAACATGTCACTATGGGAAAGAAAGTGATGGAAACCAAATTGGAATTGCAATTGAGTTCTATTTTTGAGATGCTTCAGTGACCCATTAATGATATTCATCCACTTATGCTCTGTTAAATCTCCAATTGCAGAGTTTTCATGCAGGTCTGACTATGAGACATGCAAGGGTTAGGGCTCACTACACATGACCTGGATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATTGGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAACCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAGAGCTCTAGGCAAAACTTTTAGCTGAAGAGGAAAATAAAAAAGGAAAGTCAGCACAAAACTCAAAACAACATATTCAGAAATTGATATGGTAATGCGACATAAGAATCATATCTTTGGGCTCAGGCATCACTTTTCAATTTATTCCAGGACCATAAATGGTCTATACAAGCTGTTTCTCGTTTCAGTATTGCTTAAGTACCTAGGCCTAAGAAATCTATCAGAGCCTCAAACCAGTAATGATGCCTATTCTGTCATATCTGTATATTGCAAAACTGTATTTGTTTTGTTCATTTCTATGATCTCTTCTATGGCACTTAAACATTTATAAATATGTTATATTCATTTTTGAAttttttcc---tttttttaaaaaacaggatctggctctgtcacctaagctggagtgcagtggcaccatgtcagctcactgcaaacttcaactccatggctcaagccaacctcccctagctacttcagcctcccaagtagctaggaccacaggcatgcaccaccatgtctagataatttttgtattttttgtagagacagggtctcactatgttgcccaggttggtctcgaactcctgagctcaagcaatccacccacctcggtctcccaaagtgctgggattacaggtgcgagccaacacgcccACTTTATTACCAGAAAATATAGGTATTGTTACCCCA-TTTTTTAATTTGCCTACCACTTGTGTATTCTTTGCTATTTTTTATCCCCTACCACTTTTAGAATAT----ATTT------GAATCTTTTTAAATTTTATCAGCTTCATCTCTCAGAACCATTAttttatgcatgacatctacactgtaatggaattctttattttaacttgtatttcagtcaatgggaatatttcttaaaggaattttaaagggaagttatatatcccgagtccttgaatctatgaggaaatctttccattgccttcacacatgaccaatagcttgtgtggatcaaaatAacagggtctggttctgtcacctaagctggagtgtggtggcgcc-atttcagctc-actgcaagctccaactcctggactcaagccatcctcccacctcagcctcccaagtagctgggaccacaggcatgcCACAA-TTTTTTTGCCCTTCAATACAGTTTAGGCATGAATAAAATATTGAAAAATAAAATTAACCTTCAGGATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTCACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGGAACACTTAAGGGGGAGTGTATATATGAAATACTAAGTCTAATTTTAACAGTTTAGTAATAGCAGGTCCTTAAAAATGTCAGAAAATAAACTTTTATGTCCTCTTATCCTCTTTGAATCCATTATGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAATCCTCATCTTACTTTCTTAGGACAGGAGACAATAGCAGATAAGAAAGTGTAGCAAATTTGGGGCAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAACGTGAATGCATACAGAGAGAGTACCACAGAGTGTAAAGCTGGTTTTCCTTgaatcctcagaaa----------ggctcagaacccg-------------------------------gaggcaccaggtaataccccagaaggcagggtaggcagcaggctacttcgacccctggatccctaccccaccctacaaagttggtcattaggcctcccctacttccaaccaggagaaacaag-ggttatcttccagaaaatttagtgagagagactccagatttgggaatagtagagtgaacaaaagtcaagaatagaacagaaaacagactcatgcagtgaaaatctgagcactgtgctcagcatcaaggactctgatggccataagccttctaagcaggatattggaagattctcctctaaagaaacta-----------------aacaTATAAATCTTGACTTCCTTTTTGTGGATGAAGGGGAGGAGAGGTGAAGAGATcaattaacaagccctgctgtccacacagaactttcaattggctttttagtgccatgttaaccaatatgctgcagacagttgggaaatgtctccagcctgacaattcacactaatttaaaaagaa-aaaaagaaaaccagggaaaaacaaatttgacaggaatagaaactacagggagcagaatagagct-aaaaaattataaaacaagaactattataaataaaatactcaagagagctaagagaagaaactc--tctttgaaataaaaataagattctaagaaacaggagcagtcagagaagtcgagtgaaaccttgagaattaaaatgtgatagaaaaaattagaaaaatgttcagtaaaatgtttggaaggtaaagtagaACAAGAAGTCAAATAATTTGTTCTCCTGTCTTGAagatatgt-aaaaaaaat---t i ponAbe2.chr17 C 0 I 18 s nomLeu3.chr19 48096406 3471 - 81552678 TTTTTTTTTTTGTGTGTGAGGGATGGGGttttt----tagatggggtttctctcttctttcccaggctggagtgcagtggcatgatctcagctcacggcaacctctgcctcccaggttcaagtgattctcttgcctcagcctcccaagtagctgggattacagacatgaaccaccatgcccgggtaattttgtatttttaatatagacggggtttctccatgttcatcaggctggtctcgaacccctgacctgaggtgatccgcctgtcttggcctcccaaagtgctggtattataggcgtgagccaccacgcctggACTGAAAGTTATTTTTCTTTCCTTTCCCTCTCCACTCAATTAATTC------------------------------------------------AATTAATCATGGATTTAATTTAAATGCATATGTCAAGGAGAGTATGTTTgtaatattagtgagaaaaaggactcttctctattgaagaaaagtaatacatacggaaggattgattcatagaaataaaatgtgtcaattctgaaaattcagggtaacatgcacaggtcTCAAACACATAAGATTATGTGAAGGAGAATCAAATCACAGCCGACTGTTTATATCTTTATGAAGGGTAGTATTATTAAAAAGACATTTAAAAAATTATAGTCCTTTTAAGGAGGAGGGATATGTCAAGATTAATTCATGGTGAGTTCTATGGAAAAATAAGAGGCATAATTTTAGGCTGAAGCCATAGAGTCAGTGGGAAAATCAGCGAGCATGAGTGATGAAACACGTCACTATGGGAAAGAAAGTGATGGAAACCAAATTGGAATTGCAGTTGAGTTCTATTTTTGAGATGCTTCATTGACCCATTAATGATATTCATCCACTCATGCTCCGTTAAAGCTCCAGTTGCAGAGTTTGCATGCAGGTCTAACTATGAGACATGCAAAGTTTAGGGCTCACTACACATGACCTGGATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATTGGGAGTTCAGCTCATATTGTATTTCCTGTGTCTTTTGAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAGAGCTCTAGGCAAAACTTTTAGCTGAAGAGGAAAATAAAAAAGTAAAGCCAGCACAAAACTCAAAACAACATATTCGAAAATTGATATGGTAATGTGACATGAGAATCATATCTTTGGGCTCAGGCATC-CTTTTCAATTTATTCCAGGACCATAAATGGTCTATACAAGCTGTTTCTCGTTTCAGTATTGCTTAAGTACCTAGGCCTGAGAAATCTATCAGAGCCTCAAACTAGTAATGATGCCTATTCTGTCATATCTGTATATTGCAAAACTATATTTGTTTTGTTCATTTCTATGATCTTTTCTATGGCACATACACATTTATAAATATGTTATCTTCATTTTTGAA------------ttttttgaaagacaggatctggctctgtcacctaagctggagtgcagtggcaccatgtcagctcattgcaaacttcaactccatggctcaagccaacctcccctagctacttcagcctcccaagtagctaggaccacaggcatgcaccaccatgtctagctaatttttgtattttttgtagaggcagggtctcactatgttgcccaggttggtctcgaactccagagctcaagcaatccacccaccttggtctcccaaagtgctgggattacaggtgcgagccaccatgcccACTTTATTACCAGAAAATATAGGTATTGTTACCCCA-CTTTTT-ATTTTCCTACCACTTGTGTATTCTTTGCTATTTTTTATCCCCTACTACTTTTAGAATAT----ATTT------GAATCTTTTTAAATTTTATCAGCTTCATCTCTCAGAACCATTATTTTATGCATGACACCTATACTGTAATGgaattctttattttgacttatatttcagtcaatgggaacatttcttaaaggaattttaaagggaagttatatatcccgagtccttgaatctatgaggaagtctttccattgccttcacacatgaccaatagcttgtgtggatcaaaatAacagggtctggttctgtcacctaagctggagtgtggtggcacc-atttcagctcaactgcaagctccaactcctggactcaagctgtcctcctgcctcagcctcccaagtagctgggaccacaggcatgcCACAGTTTTTTTTGCCCTTCAATGCAGTTTAGGAGTGAATAAAATATTGAAAAATAAAATTAACCTTCAGGATTATTTAACATGCTTTGGAAACACAAAGAAAGAATCTCACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGAAACACTTAAGGGGGAGTGTATATATGAGATACTAAGTCTAATTTTAACAGTTTAGTAATAGCAGCTCCTT-AAAATGTCAGAAAATAAACTTTTATGTCCTCTTATCCTCTTTGAATCCATTATGATGCACCAACTTTTAAAAGGTGTTAAAAAAACAGAAACCCTCATCTTATTTTCTTAGGACAGGAGACAACAGCAGATAAGAAAGTGCAGCAAATTTGGGGCAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAACGTGAATGCATACAGAGAGAGTACCACAGAGTGTAAAGCTGGTTTTCCTTGAATCCTCAGAAA----------GGCTCAGAAGCCC-------------------------------GAGGCACCAGGTAATA---CTGAAGGCAGGGTAGGCAGAGGGCTGCTTCGACCCCTGGATCCCTACCCCACCCTACAAAGTTGGTCATTAGGCCTCCCCCACTTCCAACCAGGAGAAACAAG-GGTTATTTTCCAGAAAATTTAGTGAGAGAGACTCCAGATTTGGGAATACTAGAGTGAACAAAAGTCAAGAATAGAACAGAAAAC--ACTCATGCAGTGAAAATCTGAGCACTGTGctcagcatccaggactctgatggccataagccttccaagcaggatattggaagattctcctctaaagaaacta-----------------aacaTATAAATCTTGACTTCCTTTTGGTGGATGAAGGGGAGGGGAGGTGAAGAGATcaattaacaagccctgctgtccacacagaaatttcaattggctttttagtgccatgttaaccaatatgctgcagacacttggaaaatgtctccagcctgacaattcacactaatttaaaaagaa-aaaaagaaaaagggggaaaaacaaatttgacaggaagagaaaatacagggagcagaatagaact-aaaaaattataaaacaagaactactatacataaaatactcaagagagctaagagaagaaattc--tctttgaaataaaaacaagattctaacaaacaggagcagtcagagaattctagtgaaaccttgagaattaaaatgtgatagaaaaaattagaaaaaagttcagtaaaatgtttggaaggtaaagtagaacaagaagtcaaaTAATTTGTTCTCCTGTCTTGAAGATATGTAAAAAAAAAT---T i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53204881 3520 + 80904711 ttttttttt-------------------ttttt----gagatggggtttcactcttgtttcccaggctggagtgcagtggcataatctcagctcacggcaacctctgcctcccaggttcaagtgattctcttgtctcagcctcccaagtagctggaattacaggcatgaaccactatgcttggctaattttgtatttctagtagagacaaggtttctccatgtttgtcagggtggtctcgaactcctgacctggggtgatccgcccacctgggcctcccaaagtgctggtattacaggcatgagccaccacgcccagACTGAAAGTTATTTTT-----CTTTCACTCTCCACCCAATAAATTC------------------------------------------------AATTAATCATGGATTTAATTTAAATACATATGTCAGGGAGAGTATGTTAgtaatattagtgagaaaaaggactctcttctgttggagaaaagtaatacatatgtaaggattaattcatagaaataaaatgtgtcaattctgaaaattcagggtaacatgcaccggtcTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATGTATATATCTTTAAGAAG---AGTATTATTAGAAAGACATTTAAAAAATTATAGTCCTTTCAAGGAGAAGGGA-----CAAGATTAATTCATAGTGAGTTCTATGGATAA--AAGAGGGATGATTTTAGGCTGCAGCCATAGAGTCAGTGGGAAAATCAACGAGCATGAGTGACGAAACACGTCACTGTGGGAAAGAAAGTGATGGAAACTAAGTTGGAAATGCAGCTGAGTTCTATTTTTGAGATGCTTCATTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAACTCCAATTGCAGAGTTTGCATGCAGGTCTAACTATGAGACATGCAAAGGTTAGGGCTCACTACACATGACCTGTATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATCAGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAAAGCTCTAGGCAAAACTTTTAGTTGAAAAGGAAAATAAAAAGGTAAAGTCAGCACAAAACTC-AAACAACATATTCAGAAATTGATATGGTAATGCAACGTGAGAATCATATCTTTGGGCTCAGGCATCCCTTTTCAATTTATTCCAGGGCCATAAATGGTCTATACAAGCTCTTTCTCATTGCAGCATTCCTTAAGTACCGAGGCCTGAGAAGTCTATCAGAGTTTCAAACTAGTAATGATGCTTATTCTGTCATATCTGTATATTGCAAAACTGTATTTGTTTTGTTCATTTCTATGATCTCTTCTATGGCACGTAAACATTTATAAATATGCTATCTTCATTTTTGAAttttttcc--tttttttttttagacagggtctggctgtgtcacctaagctggagtgcagtggcaccatgtcagctcactgcaaacttcaactcctgggctcaagacaacctcccccagctacttcagtctcccaagtagctaggaccgcaggcatgcaccaccatgtctagctaatttttgtattgtttgcagatacagggtcttactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccaccttggtctcccaaagtgctgggattacaggtgtgaaccaccacgcccACTTTATCACCAGAAAGTATAGGTATTGTTACCCCA-TTTTTTTATTTGCCTACCACTTGTGTATTCTTTGCTATTTTTTATCCTCTACCACTTTTGGAATATTTGAATCTTTTAAAAAATCTTTTAAAATTTTACCAGCTTCATCTCTCCAAAGCAATATTTTATGCATGACATTTATACTGTAATGgaattctttattttgacttatatttcagtcaacgggaatatttcttaaaggaattttaaaggaaagttatgtatcctgagtccttgaatctatgaggagatctttccactgccttcacacatgaccaatagcttgtgtggatcaaaatAACAGCAtctggttctctcacctaagctggagtgtggtggcacc-atttcagctc-actgcaagctgcagctcctggactgcagccaacctcccacctcagcctcccaagtagctaggaccacaggcatgccacAATGTTTTTTGCCCTTCAATACAGTTTAGGCATGAATAAAATATTGAGAAATAAAATTAAACTTCAGAATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTTACCAACATCTGGAGCGTGGGCACTAGTTTACTTCAGGAATAGTTAAGGGGGAGTGTATATGTGAAATACTAAGTCTAATTTTAACTGTTTAGTAATAGTAGGTCCTT-AACATGTCAGAAAATAAACACTTATGTCCTCTTATCCTCTTTGAATCCATCATGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAACCCTCTTCTTATTTTCTTAGGACAGGAGATAATAGCACATAAGAAAGGGTAGCAAATTTGGGGAAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATACAGAGAGAGTACCACAGAGTGTAACGCTGGTTTTCCTTGaaggctcagaaaggctcagaacggctcagaaCCTGTCCTTGAAGGCTCAGAAAGGCTCAGAACCTAGAGGCACCAGATAATA---CTGAAGGCAGGGTAGGCAGCGGGCTGCttagacccctggatccctaccccaccctacaaagttgctcattaggcctcccctacttccaaccaggagaaacaagaggttatcttctagaagatttagtaagagatactctagatttgggaacactagagtgaacaaaagtcaagaatagaacagaaaacagacccatgcagtgaaaatctgagccctgtgctcaccattcaggactctgatgaccataagccttccaagcagaatattggaagattctcctctaaagaaactaaaggggcccagagaaagaacatataaatcttgacttccttttggtggacgaaggggaggagaggtgaagagataaattaacaagccctgctgtccacgtaggactttcaattggctttttagtgccatgtcaact-atatgctgcagacacttgggaaatgtctccagcctgacaattcacactaatttaaaaagaacaaaaagaaaaaaggggaaaaacaagtttgacaggaatagaaactataggaagcagcatagaactaaaaaaattataaaacaagaactactataaataaaatactcaagagagctgagagaagaaattctatctttgaaataaaaacaagattctaagaaacagaagcagtcagagaagtcgggtgaaatcttgagaattaaaatgtgatagaaaaaattagaaaaaagttcagtaaaatgtttggaaggtaaattagaataagaagtcaaagaatttgttctcctgtcttgaagataggtaaaaaaaaat---t i rheMac3.chr16 I 321 C 0 s macFas5.chr16 52769345 3489 + 80997621 ttttttttt-------------------ttttt----gagatggggtttcactcttgtttcccaggctggagtgcagtggcataatctcagctcacggcaacctctgcctcccaggttcaagtgattctcttgtctcagcctcccaagtagctggaattacaggcatgaaccactatgcttggctaattttgtatttctagtagagacaaggtttctccatgtttgtcagggtggtctcgaactcctgacctggggtgatccgcccacctgggcctcccaaagtgctggtattacaggcatgagccaccacgcccagACTGAAAGTTATTTTT-----CTTTCACTCTCCACCCAATAAATTC------------------------------------------------AATTAATCATGGATTTAATTTAAATACATATGTCAGGGAGAGTATGTTAgtaatattagtgagaaaaaggactctcttctgttggagaaaagtaatacatatgtaaggattgattcatagaaataaaatgtgtcaattctgaaaattcagggtaacatgcaccggtcTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATGTATATATCTTTAAGAAG---AGTATTATTAGAAAGACATTTAAAAAATTATAGTCCTTTCAAGGAGAAGGGA-----CAAGATTAATTCATGGTGAGTTCTATGGATAA--AAGAGGGATGATTTTAGGCTGCAGCCATAGAGTCAGTGGGAAAATCAACGAGCATGAGTGACGAAACACGTCACTGTGGGAAAGAAAGTGATGGAAACTAAGTTGGAAATGCAGCTGAGTTCTATTTTTGAGATGCTTCATTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAACTCCAATTGCAGAGTTTGCATGCAGGTCTAACTATGAGACATGCAAAGGTTAGGGCTCACTACACATGACCTGTATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATCAGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAAAGCTCTAGGCAAAACTTTTAGTTGAAAAGGAAAATAAAAAGGTAAAGTCAGCACAAAACTC-AAACAACATATTCAGAAATTGATATGGTAATGCAACGTGAGAATCATATCTTTGGGCTCAGGCATCCCTTTTCAATTTATTCCAGGGCCATAAATGGTCTATACAAGCTCTTTCTCATTGCAGCATTCCTTAAGTACCGAGGCCTGAGAAGTCTATCAGAGTTTCAAACTAGTAATGATGCTTATTCTGTCATATCTGTATATTGCAAAACTGTATTTGTTTTGTTCATTTCTATGATCTCTTCTATGGCACGTAAACATTTATAAATATGCTATCTTCATTTTTGAAttttttcc--tttttttttttagacagggtctggctgtgtcacctaagctggagtgcagtggcaccatgtcagctcactgcaaacttcaactcctgggctcaagacaacctcccccagctacttcagtctcccaagtagctaggaccgcaggcatgcaccaccatgtctagctaatttttgtattgtttgcagatacagggtcttactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccaccttggtctcccaaagtgctgggattacaggtgtgaaccaccacgcccACTTTATCACCAGAAAGTATAGGTATTGTTACCCCA-TTTTTTTATTTGCCTACCACTTGTGTATTCTTTGCTATTTTTTATCCTCTACCACTTTTGGAATATTTGAATCTTTTAAAAAATCTTTTAAAATTTTACCAGCTTCATCTCTCCAAAGCAATATTTTATGCATGACATTTATACTGTAATGgaattctttattttgacttatatttcagtcaatgggaatatttcttaaaggaattttaaaggaaagttatatatcctgagtccttgaatctatgaggagatctttccactgccttcacacatgaccaatagcttgtgtggatcaaaatAACAGCAtctggttctctcacctaagctggagtgtggtggcacc-atttcagctc-actgcaagctgcagctcctggactgcagccaacctcccacctcagcctcccaagtagctaggaccacaggcatgccacAATGTTTTTTGCCCTTCAATACAGTTTAGGCATGAATAAAATATTGAGAAATAAAATTAAACTTCAGAATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTTACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGGAATAGTTAAGGGGGAGTGTATATGTGAAATACTAAGTCTAATTTTAACTGTTTAGTAATAGTAGGTCCTT-AACATGTCAGAAAATAAACACTTATGTCCTCTTATCCTCTTTGAATCCATCATGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAACCCTCTTCTTATTTTCTTAGGACAGGAGATAATAGCACATAAGAAAGGGTAGCAAATTTGGGGAAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATACAGAGAGAGTACCACAGAGTGTAACGCTGGTTTTCCTTGaaggctcagaaaggctcagaacggctcagaaCCTG-------------------------------GAGGCACCAGATAATA---CTGAAGGCAGGGTAGGCAGCGGGCTGCttagacccctggatccctaccccaccttacaaagttgctcattaggcctcccctacttccaaccaggagaaacaagaggttatcttctagaagatttagtaagagatactctagatttgggaacactagagtgaacaaaagtcaagaatagaacagaaaacagacccatgcagtgaaaatctgagccctgtactcaccatccaggactctgatgaccataagccttccaagcagaatattggaagattctcctctaaagaaactaaaggggcccagagaaagaacatataaatcttgacTTCCTTTTGGTGGACGAAGGGGAGGAGAGGCGAAGAGATAaattaacaagccctgctgtccacgtaggactttcaattggctttttagtgccatgtcaact-atatgctgcagacacttgggaaatgtctccagcctgacaattcacactaatttaaaaagaacaaaaagaaaaaaggggaaaaacaagtttgacaggaacagaaactataggaagcagcatagaactaaaaaaattataaaacaagaactactataaataaaatactcaagagagctgagagaagaaattctatctttgaaataaaaacaagattctaagaaacagaagcagtcagagaagtcgggtgaaatcttgagaattaaaatgtgatagaaaaaattagaaaaaagttcagtaaaatgtttggaaggtaaattagaataagaagtcaaagaatttgttctcctgtcttgaagataggtaaaaaaaaat---t i macFas5.chr16 I 13 C 0 s papAnu2.chr16 47772857 3502 + 74645514 ttttttttt-------------------ttttt----gagatggggtttcactcttgtttcccaggctggagtgcagtggcatgatctcagctcacagcaacctctgcctcctaggttcaagtgattctcttgtctcagcctcccaagtagctgggattacaggcatgaaccactaagcctggctaattttgtatttctagtagagacaaggtttctccatgttcgtcagggtggtctcgaactcctgacctgaggtgatccgtccacctcggcttcccaaagtgctggtattacaggcatgagccaccacgcccagactgaaagttatttttctttcctttccctctccacCCAATAAATTC------------------------------------------------AATTAATCATGGatttaatttaaatacatatgtCAGGGAGAGTATGTTGGTAATATTAGTGAGAAAAAGGACTCTCTTCTGTTGGAGAAAAGTAATACATACGTAAGGATTgattcatagaaataaaatgtgtcaaTTCTGAAAATTCAGGGTAACATGCACCGGTCTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATGTATGTATCTTTAAGAAGAGTAGTATTAttagaaagacatttaaaaaattatagtccTTTCAAGGAGGAAGGACATGTCAAGATTAATTCATGGTGAGTTCTATGGAAAAATAAGAGGGATGATTTTAGGCTGCAGCCATAGAGTCAGTGGGAAAATCAACGAGCATGAGTGACGAAACACGTCACTGTGGGAAAGAAAGTGATGGAAACTAAGTTGGAAATGCAGCTGAGTTCTATTTTTGAGATGCTTCATTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAACTCCAACTGCAGAGTTTGCCTGCAGGTCTAACTATGAGACGTGCAAAGGTTAGGGCTCACTACACATGACCTGGATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATCAGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAAAGCTCTAGGCAAAACTTTtagttgaaaaggaaaataaaaaggtaaagtCAGCACAAAACTC-AAACAACATATTCAGAAATTGATATGGTAATGCAACGTGAGAATCATATCTTTGGACTCAGGCATCCCTTTTCAATTTATTCCAGGGCCATAAATGGTCTATACAAGCTCTTTCTCATTGCAGCATTCCTTAAGTACCTAGGCCTGAGAAGTCTATCAGAGTCTCAAACTAGTAATAATGCTTATTCTGTCATATCTGTATATTGCAAAActgtatttgttttgttcatttctatgATCTCTTCTATGGcacataaacatttataaatatgttatcttcatttttgaattttttcctttttttttttttagacagggtctggctgtgtcacctaagctggagtgcagtggcaccatgtcagctcactgcaaacttcaactcctgggctcaagacaaCCTCCCCCAgctacttcagtctcccaagtagctaggaccacaggcatgcaccaccatgtctagctaatttttgtattgtttgcagatacagggtcttactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccaccttggtctcccaaagtgctgggattacaggtgtgaaccaccacgcccactTTATCACCAGAAAGTATAGGTATTGTTACcccattttttttatttgcctACCACTTGTGTattctttgctattttttatcctctaccacttttggaatatttgaatcttttaaaaaatcttttaaaattttaccagcTTCATCTCTCCAAACCAATATTTTATGCATGGCATTTATACTGTAATGGAATTCTTTATTTTGACTTATATTTCAGTCAATGGGAATATTTCTTAAGGGAATTTTAAAGGAAAGTTATATATCCTGAGTCCTTGAATCTATGAGGAGATCTTTCCACTGCCTTCACACATGACCAATAGTTTATGTGGATCAAAATAATAGCATCTGGTTCTCTCACcaaagctggagtgtggtggcaccaatttcagctc-actgcaagctgcagcTCCTGGACTGCagccaacctcccacctcagcctcccaagtagctaggaccacaggcatgccacAATGTTTTTTGCCCTTCAATACAGTTTAGGCATgaataaaatattgagaaataaaattaaccttcaaaattatttaacatgctttggaa--acagagaaagaatctCACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGGAATAGTTAAGGGGGAGTATATATGTGAAATACTAAGTCTAATTTTAACTGTTTAGTAATAGTAGGTACTT-AACATgtcagaaaataaacatttatgtcCTCTTATCCTCTTTGAATCCATCATGATACACCAACTTTTAAAAggtatt-aaaaaacagaaaccctCTTCTTAATTTCTTAGGACAGGAGATAATAGCACATAAGAAAGGGTAGCAAATTTGGGGAAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATACAGAGAGAGTACCACAGAGTGTAAAGCTGGTTTTCCTTGAAggctcagaacggctcagaacggctcagaacCTG-------------------------------GAGGCACCAGATAATA---CTGAAGGCAGGGTAGGCAGCGGGCTGCTTAGACCCCTGGATCCCTACCCCACCCTACAAAGTTGCTCATTAGGCCTCCCCTACTTCCAACCAGGATAAACAAGAGGTTATCTTCTAGAAGATTTAGTAAGAGATACTCTAGATTTGGGAACACTAGAGTGAACAAAAGTCAAGAATAGAACAGAAAACAGACCCATGCAGTGAAAATCTGAGCCCTGTGCTCATCACCCAGGACTCTGATGACCATAAGCCTTCCCAGCAGAATATTGGAAGATTCTCCTCTAAAGAAACTAAAGGGGCCCAGAGAAAGAACATATAAATCTTGGCTTCCTTTTGGTGGACGAAGGGGAGGAGAGGTGAAGAGATAAATTAACAAACCCTGCTGTCCACGTAGGACTTTCAATTGGCTTTTTAGTGCCATGTCAACT-ATATGCTGCAGACACTTGGGAAATGTCTCCAGCCTGACAATCCAcactaatttaaaaagaacaaaaagaaaaaaggggaaaaacaaaTTTGACAGGAATAGAAACTATAGGAAGCAGCATAgaactaaaaaaattataaaacaagaactactataaataaaatactcaAGAGAGCTGAGAGAAGAAATTCtatctttgaaataaaaacaagattctAAGAAACAGAAGCAGTCAGAGAA---GGGTGAAATCTTGAGAATTAAAATGTgatagaaaaaattagaaaaaagttcAGTAAAATGTTTGGAAGGTAAATTAGAATAAGAAGTCAAAGAATTTGTTCTCCTGTCTTGAagataggt-taaaaaaat---t i papAnu2.chr16 I 10 C 0 s chlSab2.chr16 10036316 3536 - 75148670 ttttttttt-------------------ttttt----gggttggggtttcactcttgtttcccaggctggagtgcagtggcataatctcagctcacagcaacttctgcctcccaggttcaagtgattctcttgtctcagcctcccaagtagctgggattacaggcatgaaccactatgcctggctaattttgtatttctagtagagacaaggtttctccatgttcgtcagggtggtctcgaactcctgacctgaggtgattcgcccacctcggcctcccaaagtgctggtattacaggcatgagccaccacgcccagACTGAAAGTTATTTTTCTTTCCTTTCACTCTCCACCCAATTAATTCAATTATGGATTAATCATGGATTTAATTTATGGATTATTATCCATGGAAAATTAATCATGGATTTAATTTAAATACATATGTCAGGGAGAGTATGTTGGTAATATTAGTGAGAAAAAGGACTGTCTTCTGTTGGAGAAAAGTAATACATATGTAAGGACTGATTCATAGAAATAAAATGTGTCAATTCTGAAAATTCAGGGTAACATGCACCAGTCTCAAACACGTAAGATTATGTGAAGGAGAATCAGATCACAGCCGAATGTATATATCTTTAAGAAGAGTAGTATTATTAGAAAGACATTTAAAAAATTATAGTCCTTTCAAGGAGGAGGGA-----CAAGATTAATTCATGGTGAGTTCTATGGAAAAATAAGAGGGATGATTTTAGGCTGCAGCCGTAGAGTCAGTGGGAAAATCAACGAGCATGAGTGACGAAACACGTCACTGTGGGAAAGAAAGTGATGGAAACTAAGTTGGAAATGCAGCTGAGTTCTATTTTTGAGATGCTTCATTGACCCATTAATGATATTCATCCACTCATGCTCCATTAAAATTCAAATTGCAGAGTTTGCATGCAGGTCTAACTATGAGACATGCAAAGGTTAGGGCTCACTACACATGACCTGGATCAAGTCACCCAGCTGCCTGTGTTTCCTTTATAACTTTGAGATTCCCTTTTGCATCAGGAGTTCAGTTCATATTGTATTTCCTGTGTCTTTTCAAGCCATTTCCTTCCATTTCAAAATGATATCAATCAAAATGATATCAGTAGGCTCAAAAGCTCTAGGCAAAACTTTTAGTTGAAAAGGAAAATAAAAAGGTACAGTCAGCACAAAACTC-AAACAACATATTCAGAAATTGATATGGTAATGCAACGTGAGAATCATATCTTTGGGCTCAGGCATCCCTTTTCAATTTATTCCAGGGCCATAAATGGTCTATACAAGCTCTTTCTCATTGCAGCATTCCTTAAGTACCTAAGCCTGAGAAGTCTATCAGAGTCTCAAACTAGTAATGATGCTTATTCTGTCATATCTGTATATTGCAAAAC--TATTTGTTTTGTTCATTTCTATGATCTCTTCTATGGCACATAAACATTTATAAATATGCTATCTTCATTTTTGAAttttttcc-ttttttttttttagacagggtctggctgtgtcacctaagctggagtgcagtggcaccatgtcagctcactgcaaacttcaactcctgggctcaagacaacctcccctagctacttcagtctcccaggtagctaggaccgcaggcatgcaccaccatgtctagctaatttttgtattgtttgcagatacagggtcttactatgttgcccaggttggtcttgaactcctgagctcaagcaatccacccaccttggtctcccaaagtgctgggattacaggtgtgaaccaccacacccACTTTATCACCAGAAAGTACAGGTATTGTTACCCCA-TTTTTTTATTTGCCTACCACTTGTGTATTCTTTGCTATTTTTTATCCTCTACCACTTTTGGAATATTTGAATCTTTTAAAAAATCTTTTAAAATTTTACCAGCTTCATCTCTCCAAACCAATATTTTATGCATGACATTTATACTGTAATGgaattctttattttgacttatatttcagtcaatgggaatatttcttaaaggaattttaaaggaaagttatatatcctgagtccttgaatctatgaggagatctttccattgccttcacacatgaccaatagcttgtgtggatcaaaatAACAGCAtctggttctctcacctaagctggagtgtggtggcacc-atttcagctc-actgcaagctgcagctcctggactgcagccaacctcccacctcagcctcccaagtagctaggaccacaggcatgccacAATGTTTTTTGCCCTTCAATACAGTTTAGGCATGAATAAAATATTGAGAAATAAAATTAAACTTCAGAATTATTTAACATGCTTTGGAAACACAGAGAAAGAATCTCACCAACATCTGGAGCATGGGCACTAGTTTACTTCAGGAATAGTTAAGGGGGAGTGTATATGTGAAATACTAAGTCTAATTTTAACTGTTTAGTAATAGTAGGTCCTT-AACATGTCAGAAAATAAACATTTATGTCCTCTTATCCTCTTTAAATCCATCACGATACACCAACTTTTAAAAGGTGTT-AAAAAACAGAAACCCTCTTCTTATTTTCTTAGGACAGCAGATAATAGCACATAAGAAAGGGTAGCAAATTTGGGGAAAGAGCAATGGTGGTCAACTAAAGATAACAAAAGGAGCTACAATGTGAATGCATACAGAGAGAGTACCACAGAGTGTAAAGCTGGTTTTCCTTGAAGGCTCAGAAA----------GGCTCAGAACCTG-------------------------------GAGGCACCAGATAATA---CTGAAGGCAGGGTAGGCAGCGGGCTGCTTAGACCCCTGGATCCCTACCCCACCCTACAAAGTTGCTCATTAGGCCTCCCCTACTTCCAACCAGGAGAAACAAGAGGTTATCTTGTAGAAGATTTAGTAAGAGATACTCTAGATTTGGGAACACTAGAGTGAACAAAAGTCAAGAATAGAACAGAAAACAGACCCATGCAGTGAAAATCTGAGCCCTGTGCTCATCATccaggactctgatgaccataagccttccaagcagaatattggaagattctcctctaaagaaactaaaggggcccagagaaagaacatataaatcttgacTTCCTTTTGGTGGACGAAGGGGAGGAGAGGTGAAGAGATAaattaacaagccctgctgtccacgtaggactttcaattggctttttagtgccatgtcaact-atatgctgcagacacttgggaaatgtctccagcctgacaattcacactaatttaaaaagaacaaaaagaaaaaaggggaaaaacaaatttgacaggaatagaaactataggaagcagcatagaactaaaaaaattataaaacaagaactgctataaataaaatactc-agagagctgagagaagaaattc--tctttgaaataaaaacaagattctaagaaacagaagcagtcagagaagtcaggtgaaatcttgagaattaaaatgtgatagaaaaaaatagaaaaaagttcagtaaaatgtttggaaggtaaattagaataagaagtcaaagaatttgttctcctgtcttgaagataggtaaaaaaatatatat i chlSab2.chr16 I 12 C 0 e canFam3.chr9 21526269 3457 + 61074082 I e calJac3.chr5 46182060 43331 - 159171411 I a score=489512.000000 s hg38.chr17_JH159146v1_alt 225984 267 + 278131 ATAAAAAGAAGTGAAAGAAATGGACATTAAAGAAACTATAATAACACAGAGGATCAATTCAGGAGATCTACCACTCAATGAAGAAAAATTTTAGAAAGACAAATGAGAAAACATAAGGagtcaggtgtaatggttgcctgtgcctatagtcccagttacttgggaggctgaggtgagagggtcccttgggcccagggatttgaagccagcctgggcaacatagagaagtcttgtctcaaaaggaaaaaagaagacaggaagggaagg s panTro4.chr17 66348358 267 - 82630442 ataaaaagaagtgaaataaatggacattaaagaaactataataacacagaggatcaattcaggagatctaccactcaatgaagaaaaattttagaaagacaaatgagaaaacataaggaaTCAGGTGTAATggtggcctgtgcctatagtcccagttacttgggaggctgaggtgagagggtcccttgggcccagggatttgaagccagcctgggcaacatagagaagtcttgtctcaaaaggaaaaaagaaGACAGGAAGGGAAGG i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48099877 262 - 81552678 ATAAAAAGAAGTGAAAGAAATGGACATTAAAGAAAATATAATAACAAAGAGGATCAATTCGGGAGATCTACCACTC----AAGAAAAATTTTAGAAAGACAGATGAGAAAACATAAGGAGTCAGGTGTAATggtggcctgtgcctataatcccagttacttgggaggctgaggtgagagggtcccttgggcccaggaa-ttgaagccagcctgggcaacatagtgaagtcttgtctcaaaaggaaaaaagaaGATGggaagggaagg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53208401 267 + 80904711 ataaaaagaagtgaaagaaatggacattaaagaaaatataataacacagaggatcaattcaggagatctaccactcaatgaagaaaaattttagaaagacagataagaaaaCATAAGGAGTCAGGTGTAATggtggcctgtgcctctagtcccagttacttgggaggctgaggtgagagggtccctttggcccagggatttgaagccagcctaggcaacatagtaaagtcttgtctcaaaaggcaaaaaGAAGACTggaaggaaagg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52772834 267 + 80997621 ataaaaagaagtgaaagaaatggacattaaagaaaatataataacacagaggatcaattcaggagatctaccactcaatgaagaaaaattttagaaagacagataagaaaaCATAAGGagtcaggtgtaatggtggcctgtgcctctagtcccagttacttgggaggctgaggtgagagggtccctttggcccagggatttgaagccagcctaggcaacatagtaaagtcttgtctcaaaaggcaaaaagaagaCTggaaggaaagg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47776359 267 + 74645514 ataaaaagaagcgaaagaaatggacattaaagaaaatataataacacAGAGGATCAATTCAGGAGATCTACCActcaatgaagaaaaattttagaaagacagATAAGAAAACATAAGGAGTCAGGTGTAATGGTGGcctgtgcctctagtcccagttacttgggaggctgaggtgagagggtcccTTGGGCCCAGGGATTTGaagccagcctaggcaacatagtaaagTCTTGTctcaaaaggcaaaaagaagactggaagggaagg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10039852 267 - 75148670 ataaagagaagcaaaagaaatggacattaaagaaaatataataacacagaggatcaattcaggagatctaccactcaatgaagaaaaattttagaaagacagataagaaaGCATAAGGagtcaggtgtaatggtggcctgtgcctctagtcccagttacttgggaggctgaagtgagagggtcccttgggcccagggatttgaagccagcctaggcaacatagtaaagtcttgtctcaaaaggcaaaaagaaGACTggaagggaagg i chlSab2.chr16 C 0 I 30 e ponAbe2.chr17 24873938 18 - 73212453 I e canFam3.chr9 21526269 3457 + 61074082 I e calJac3.chr5 46182060 43331 - 159171411 I a score=-1826.000000 s hg38.chr17_JH159146v1_alt 226251 2 + 278131 ga- s panTro4.chr17 66348625 2 - 82630442 ga- i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48100139 2 - 81552678 ga- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53208668 2 + 80904711 -ga i rheMac3.chr16 C 0 I 28 s macFas5.chr16 52773101 1 + 80997621 -g- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47776626 1 + 74645514 -g- i papAnu2.chr16 C 0 C 0 e ponAbe2.chr17 24873938 18 - 73212453 I e canFam3.chr9 21526269 3457 + 61074082 I e calJac3.chr5 46182060 43331 - 159171411 I e chlSab2.chr16 10040119 30 - 75148670 I a score=12394.000000 s hg38.chr17_JH159146v1_alt 226253 38 + 278131 gaaagaaagaaagagagagagaaagagagagagagaaa s panTro4.chr17 66348627 38 - 82630442 gaaagaaagaaagagagagagaaagagaaagagagaga i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48100141 38 - 81552678 gaaagaaagaaagcaagagagaatgagaaagagaaaga i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52773102 28 + 80997621 ------aagggaaggagatggaaggggagggaag---- i macFas5.chr16 C 0 I 1 s papAnu2.chr16 47776627 28 + 74645514 ------aagggaaggggatggaagggaagggaag---- i papAnu2.chr16 C 0 I 1 e ponAbe2.chr17 24873938 18 - 73212453 I e canFam3.chr9 21526269 3457 + 61074082 I e calJac3.chr5 46182060 43331 - 159171411 I e chlSab2.chr16 10040119 30 - 75148670 I e rheMac3.chr16 53208670 28 + 80904711 I a score=15207.000000 s hg38.chr17_JH159146v1_alt 226291 23 + 278131 gagaaaga-----------------aaagaaagaaagaaa s panTro4.chr17 66348665 38 - 82630442 gagagagagagagagaga--gagagagagagagagagaaa i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48100179 40 - 81552678 aagagagaaagagagaaaagaaagaaaggaaagaaagaaa i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52773131 22 + 80997621 gagaaag------------------aaagaaggaaagaaa i macFas5.chr16 I 1 C 0 s papAnu2.chr16 47776656 22 + 74645514 gagaaag------------------aaggaaagaaggaaa i papAnu2.chr16 I 1 I 4 s chlSab2.chr16 10040149 22 - 75148670 gagaaag------------------aaagaaggaaagaaa i chlSab2.chr16 I 30 C 0 e ponAbe2.chr17 24873938 18 - 73212453 I e canFam3.chr9 21526269 3457 + 61074082 I e calJac3.chr5 46182060 43331 - 159171411 I e rheMac3.chr16 53208670 28 + 80904711 I a score=1027823.000000 s hg38.chr17_JH159146v1_alt 226314 714 + 278131 gaaaaagaaagaaag-------aaagaaagaaagaaagaaaggaagaaaggaagaagggaaggaaggaagaagggaaggaaggaagagaaggaagg--aagaagggaaggaaggaagaagggaaggaaggaagaagggaaggaaggagggaggaaggaaggaaagaagagagggaggaaggaaaggagagaaagaaagagaaagaggaaggaaggaaaagaaagaaagacaaggaagaa--aaagaaaggaag--------gaagacaggaagaaagggaaatagagaaagaggaagggagggagggaaggaaa------------gaa------------gaaggaaggaaggaaatacaagggagaaaactatcaaagaaatagtataagaaaatttctttcagaagggagctccagattaaaagaccaccagcgctgagaacagtgaatgtaaggcttacatcaagatacatcactgtgaaatctcagaatattagggatatgaaaatggtactaaaagcgtccaatgaggaaaataatatgtggttcccataccaaggttcaggaggcgaaatggcatcacacttttcaacatcaacaccggaagccagaagacaatgggaaatgccttaaaatttctcagtgggatgttttttagcctagaattccatgcctggccaaactaccaaacagaaacaaaggaatagtaacattttcagatatgaaaagcccaaaaaaatccttattgtccgtga s panTro4.chr17 66348703 727 - 82630442 gagagagagagaaagagaaagaaaagaaagaaagaaagaaagaaagaaaggaagaagggaaggaaggaagaagggaaggaaggaaga-agggaagg--aagaagggaaggaaggaggga-ggaaggaaggatgaagggaaggaaggagggaggaaggaaggaaagaagggagggaggaaggaaaggagagaaagaaagagaaagaggaaggaaggaaaagaaagaaagacaaggaagaa--aaagaaaggaag--------gaagacaggaagaaagggaaatagagaaagaggaagggagggagggaaggaag------------gaa----ggaagaaggaaggaaggaaggaaatacaagggagaaaactatcaaagaaatagtataagaaaatttctttcagaggggagctccagattaaaagaccaccagcactgagaacagtgaatgtaaggctcacatcaagatacatcactgtgaaatctcagaatattagggatatgaaaatggtactaaaagcgtccaatgaggaaaataatatgtggttcccataccaaggttcaggaggtgaaatggcatcacacttttcaacatcaacaccggaagccagaagacaatgggaaatgccttaaaatttctcagtgggatgttttttagcctagaattccatgcctggccaaactaccaaacagaaacaaaggaatagtaacattttcagatatgaaaagtccaaaaaaatccttattgtccctgc i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48100219 717 - 81552678 gaaaaaga-agaaag----aaaaaagaaagaaag-aagaaagaaagaa--gaaagaaagaaagaaagaagaaagaaagaaagaaaga-aagaaaga--aagaaagaaagaaagaaagaa---aaggaaggaaggaagatgggaaggagggagggaggaaggaaagaagggagggaggaaggaaaggagagaaagaaagagaaagaggaaggaaggaaaagaaagaaagaagaggaagaaagaaagaaaggaag--------gaagagaggaagaaaaggaaac--agaaagaggaagggagggagggagggaaa------------aag----gaaggaaggaaggaagaaaggaaatacaagggagaaaactatcaaagaaatagtataagaaaatttctttcagaagggagctacagattaaaagaccaccagtgctgagaacagtgaatgtaaggctcacatcaagatacatcactgtgaaatctcagaatattagggatatgaaaatggtactaaaagcatccaatgaggaaaataatatgtggttcccataccaaggttcaggaggcaaaatggcatcacacttttcaacatcaacaccagaagccagaagacaatgggaaatgccttaaaatttctcagtgggatgttttttagcctagaattccatgcctggccaaactaccaaatagaaacaaaggaatagtaacgttttcagatatgaaaagtccaaaaaaatccttattgtccctgc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53208698 672 + 80904711 -----------------------------------gagaaagaaaaaa-ggaaagaaggaaagaaagaa------aaagaaagagaa-agagaaagaaaaggaagaagggaaggaaggt-agaagggaaga-----------aaggagggaggaaggaaggaaagaagggagggaggaaggaaaag----------aaagaaagaggaag----gaaaggaaagaaagaagaggacagaagaaagaaagaaaggaagagaggaagaaaggaagaaagggaaatagagaaagaggaatggagggagggagggaaa------------aaggaaggaaggaaggaaagaaggaaagaaatatgagggagaaaactatcaagtaaatagtataagaaaatttctttcagaagggagctccagattaaaagaacaccagtgctgagcacagtgaatgtaaggttcacattaagatacgtcactgtgaaatctcagaatattagggatatggaaatggcactaaaagtgtccaacgaggaaaataatatgtggttcccatacca---ttcaggaagtaaaatggcatcacacttttcaacatcagcactggaagccagaagacaatgggaaatgccttaaaatttcttagtgggatgttttttagcctagaattccatgcctgggcaaactaccaaacagaaacaaaggaatagtaaaattttgagatatgaaaagtcc-aaaaaatccttactgtccctgc i rheMac3.chr16 I 28 C 0 s macFas5.chr16 52773153 646 + 80997621 -------------------------------------gaaagaaaaa---gaaagagaaagagaaagaa------aaggaagaaggg-aaggaagg--tagaagggaagaaaggaggga-ggaaggaagga-----------aagaagggagggaggaaggaaaagaaagaaagaggaaggaaagg----------aaagaaagaag----------aggacagaagaaaga------aagaaaggaagagag--------gaagaaaggaagaaagggaaatagagaaagaggaatggagggagggagggaaa------------aaggaaggaaggaaggaaagaaggaaagaaatatgagggagaaaactatcaagtaaatagtataagaaaatttctttcagaagggagctccagattaaaagaacaccagtgctgagcacagtgaatgtaaggttcacattaagatacgtcactgtgaaatctcagaatattagggatatggaaatggcactaaaagtgtccaacgaggaaaataatatgtggttcccatacca---ttcaggaagtaaaatggcatcacacttttcaacatcagcactggaagccagaagacaatgggaaatgccttaaaatttcttagtgggatgttttttagcctagaattccatgcctgggcaaactaccaaacagaaacaaaggaatagtaaaattttgagatatgaaaagtcc-aaaaaatccttactgtccctgc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47776682 697 + 74645514 -------------------------gaaaaagaaagagagagaaaaa---gaaagagaaagagaaagaa------aaggaagaaggg-aaggaagg--tagaagggaagaaaggaggga-ggaaggaagga-----------aaggagggaggaaggaaggaaagaagggagggaggaaggaaaag----------agagaaagaggaaggaaagaaaagaaagaaagaagaggacagaagaaagaaaggaaggaagagaggaagaaaggaagaaagggaaatagagaaagaggaatggagggagggagggaaaaaggaaggaaggaaggaaggaaggaaggaaagaaggaaagaaatatgagGGAGAAAACTATCAAGTAAATAGTATAAGAAAATTTCTTTCAGAAGGGAGCTCCAGATTAAAAGAACACCAGTGCTGAGCACAGTGAATGTAAGGTTCACATCAAGATACATCACTGTGAAATCTCAGAATATTAGGGATATGGAAATGGCACTAAAAGTGTccaatgaggaaaataatatgtGGTTCCCATACCAAGGTTCAGGAAGTAAAATGGCATCACACTTTTCAACATCAGCactggaagccagaagacaatgggaAATGCCTTAAAATTTCTTAGTGGGATGTTTTTTAGCCTAGAATTCCATGCCTGGGCAAACTACCAAACAGAAACAAAGGAATAGTAAAATTTTGAGATATGAAAAGTCC-AAAAAATCCTTACTGTCCCTGC i papAnu2.chr16 I 4 C 0 s chlSab2.chr16 10040171 634 - 75148670 --------------------------------------------------------gaaagagaaagaa------aaggaagaaggg-aaggaagg--tagaagggaagaa-----------------------------------agggaggaaggaaggaaagaagggagggaggaaggaaaag----------agagaaagaggaaggaaagaaaagaaagaaagaagaggacagaagaaagaaaggaaggaagagaggaagaaaggaagaaaaggaaatagagaaagaggaatggagggagggagggaaa------------aaggaaggaaggaaggaaagaaggaaagaaatacgagggagaaaactatcaagtaaatagtataagaaaatttctttcagaagggagctccagattaaaagaacaccagtgctgagaacagtgaatgtaaggttcacatcaagatacatcactgtgaaatctcagaatattagggatatggaaatggcattaaaagtgtcccatgaggaaaataatatgtggttcccataccaaggttcaggaagtaaaatggcatcacacttttcaacatcagcactggaagccagaagacaatgggaaatgccttaaaatttcttagtgggatgttttttagcctagaattccatgcctgggcaaactaccaaacagaaacaaaggaatagtaaaattttgagatgtgaaaagtcc-aaaaaatccttactgtccctgc i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24873938 18 - 73212453 I e canFam3.chr9 21526269 3457 + 61074082 I e calJac3.chr5 46182060 43331 - 159171411 I a score=1357041.000000 s hg38.chr17_JH159146v1_alt 227028 559 + 278131 accctttctaaagtaacgtctggaggatgtgcaccaccaacatgaagaagaagttgacaaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaaTCAGAATTGCATTCaaggtaaatccaaaaatggcaaccgtacagcaagcctagaaagcaatcagtgcagaggagaacagtaagatgaagattttggagggagaactctaggaaaaAAGatctttctaaatggtgtggttacagtactatttcttgacttttaaagtttagatattatctattggcccactgttatgtgtgatgagaatttagctcttacatccctctctatccaacagccaccattcttcctctccctttgtgttccaacttcccaatTGACCTGAGAATTCTAAATTACTGTCAAATGTAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgataatgaaaaccacaataagatattacctcatgcctgttaggatggctgttatcaaaaagtcaaaagataagtgttggcaaggatgtggtgtaaagggaa s panTro4.chr17 66349430 558 - 82630442 accctttctaaagtaacgtctggaggatgtgcaccaccaacatgaagaagaagttgacaaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaatcagaattgcattcaaggtaaatccaaaaatggcaaccgtacatcaagcctagaaagcaatcagtgcagaggagaacagaaagatgaggattttggagggagaactctagg-aaaaagatctttctaaatggtgtggttacactactatttcttgacttttaaagtttagatattatctattggcccactgttatgtgtgacgagaatttagctcttacatccctctctatccaacagccaccattcttcctctccctttgtgttccaacttcccaaCTGACCTGAGAATTCTAAAGTACTGTCAAATGTAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgataatgaaaaccacaataagatattacctcatgcctgttaggatggctattatcaaaaagtcaaaagataagtgttggcaaggatgtggtgtaaagggaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24873956 557 - 73212453 accctttctaaagtaatgtctggaggatgtgcaccaccaaaatgaagaagaagttgacaaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaatcagaattgcattcaacataaatccaaaaat-gcaaccgtacagcaagcctagaaagcaatcagtgcagaggagaacagtaagatgagggttttggagggagaactctagg-aaaaagatctttctaaatggtgtggttacactactatttcttgacttttaaagtttagatattatctattggcccactgttatgtgtgatgagaatttagctcttacatccctctctatccaacagccaccattcttcctctccctttgtgttccaacttcccaatTGACCTGAGAATTCTAAAGTACTGTCAGATGTAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgataatgaaaaccacagtaagatattacctcatgcctgttaggatggctattatcaaaaagtcaaaagataagtgttggcaaggatgtggtgtaaaggtaa i ponAbe2.chr17 I 18 C 0 s nomLeu3.chr19 48100936 558 - 81552678 accctttctaaagtaacgtctggaggatgtgcaccaccaaaatgaagaagaagttgacaaagaggagaacatagattcagaaaacaggaatttcaagacagaaaatcagaactgcattcaaggtaaatccaaaaatgacaaccgtacagcaagcctagaaagcaatcagtgaagaggagaacagtaagatgagggttttggaggaagaactccagg-aaaaagatatttctaaatggtgtggttacactactacttcctgacttttaaagtttagatattatctattggcccactgttacgtgtgatgagaatttagctcttacatccctctctatccaacagccaccatttttcctctcccTTTGTGTTCCAACTTCCCAACTGACCTGAGAATTCTAAAGTACTATCAAATGTAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgataatgaaaaccacaataagatattacctcacgcctgttaggatggctattatcaaaaagtcaaaagataagtgttggcaaggatgtggtgtaaagggaa i nomLeu3.chr19 C 0 I 320 s rheMac3.chr16 53209370 555 + 80904711 acgctttctaaagtaatgtctgcaggatgtgcaccaccaaaat---gaagaggttgacaaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaatcagaactgcattcaaggtaaatccaaaaatggcaactgtacagcaagcctagaaaatgatcagtgcagaggagaacagtaagatgagggttttggagagagaactctagg-aaaaagatatttctaaatggtgtggttacactactacttcctgacttttaaagtttagatattatctattggcccactgttacatgtgatgagaatttagctcttacatccctcactatccaacagccaccattcttcctctccccttgtgttccaacttcccaatTGACCTGATAATTCTAAAGTACTGTCAAATGCAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgctaatgaaaaccacaataagatattacctcatgcctattaggataactattatcaaaaagtcaaaagataagtgttggcaagggtgtggtgtaaaggcaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52773799 555 + 80997621 acgctttctaaagtaatgtctgcaggatgtgcaccaccaaaat---gaagaggttgacaaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaatcagaactgcattcaaggtaaatccaaaaatggcaaccgtacagcaagcctagaaaatgatcagtgcagaggagaacagtaagatgagggttttggagagagaactctagg-aaaaagatatttctaaatggtgtggttacactactacttcctgacttttaaagtttagatattatctattggcccactgttacatgtgatgagaatttagctcttacatccctcactatccaacagccaccattcttcctctccccttgtgttccaacttcccaatTGACCTGATAATTCTAAAGTACTGTCAAATGCAGTCTTtgaaaaggtgctcaacatcactaatcatcagggaagtgctaatgaaaaccacaataagatattacctcatgcctattaggataactattatcaaaaagtcaaaagataagtgttggcaagggtgtggtgtaaaggcaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47777379 555 + 74645514 ACGCTTTCTAAAGTAATGTCTGCAGGATGTGCACCACCAAAAT---GAAGAGGTTGACAAAGAGGAGAACACAGATTCAGAAAACAGGAATTTCAAGTCAGAAAATCAGAACTGCATTCAAGGTAAATCCAAAAATGACAACCGTACAGCAAGCCTAGAAAATGATCAGTGCAGAGGAGAACAGTAAGATGAGGGTTTTGGAGAGAGAACTCTagg-aaaaagatatttctaaaTGGTGTGGTTACACTACTACTTCCTGACTTTTAAAGTTTAGATATTATCTATTGGCCCACTCTTACATGTGATGAGAATTTAGCTCTTACATCTCTCACTATCCAACAGCCACCATTCTTCCTCTCCCGTTGTGTTCCAACTTCCCAATTGACCAGATAATTCTAAAGTACTGTCAAATGCAGTCtttgaaaaggtgctcaacatcactaatcatcagggaagtgctaatgaaaaccacaataagtTATTACCTCATGCCTATTAGGataactattatcaaaaagtcaaaagataagtgttggcaaggatgtggtgTAAAGGCAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10040805 555 - 75148670 acgctttctaaagtaatgtctgcaggatatgcaccaccaaaat---gaagaggttgacgaagaggagaacacagattcagaaaacaggaatttcaagtcagaaaatcagaactgcattcaaggtaaatccaaaaatgacaaccgtacagcaagcctagaaaatgatcagtgcagaggagaacagtaagatgagggttttggagagaaaactctagg-aaaaagatatttctaaatggtgtggttacactactacttcctgacttttaaagtttagatattatctattggcccactgttacatgtgatgagaatttagctcttacatccctcactatccaacagccaccattcttcctctccccttgtgttccaacttcccaatTGACCTGATAATTCTAAAGTACTGTCAAATGCAGTCTTCgaaaaggtgctcaacatcactgatcatcagggaagtgctaatgaaaaccacaataagatattacctcatgcctattaggataactattatcaaaaagtcaaaagataagtgttggcaaggatgtggtgtaaaggcaa i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21526269 3457 + 61074082 I e calJac3.chr5 46182060 43331 - 159171411 I a score=1592015.000000 s hg38.chr17_JH159146v1_alt 227587 701 + 278131 ctcttatacattgttggtgggaatgtaacttgatgcagccattatggaaaacagtatggaggctcctcaaaaaattaaaaatagaactcacctgtgaaccagcaattccacttctggatacatatccaaagtaaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacagctactaagatacagaaatatctatatgcccatccacaga----tgagtggataaagaaaatgtatataaatgtcattattcaaaatgcaattcagcctttaaaaggaagaaaatcctgtcatttataacaacatggatgaacccagaggacattaagctaagtgaaataagctagacacacaaagaccgatactgcatgatctgacttatatggtggttgcatggggtggaatgaggaagaaactggtagacgttggtcaaagagtataaagtttcagctatccaaaatcagtaagttctggaaattgaatgtatggcaatgtgactatagttaacaatactgtattgtacacttgaaatttgctagaacataagtattttcaccacaaaaagaataactatgtgaggtgattgatatgttaattagtttgattgtggtcatctacttcacaatgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt s panTro4.chr17 66349988 701 - 82630442 ctcttatacattgttgttgggaatgtaacttgatgcagccattatggaaaacagtatggaggctcctcaaaaaattaaaaatagaactcacctgtgaaccaggaattccacttctggatacatatccaaagtaaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacaactactaagatacagaaatatctacatgcccatccacaga----tgagtggataaagaaaatgtatataaatgtcattattcaaaatgcaattcagcctttaaaaagaagaaaatcctgtcatttataacaacatggatgaacccagaggacattaagctaagtgaaataagctagacacacaaagaccgatactgcatgatctgacttatatggtggttgcctggggtggaatgaggaagaaatgggtagatgttggtcaaagagtataaagtttcagctatccaaaatcagtaagttctggaaattgaatgtatggcaatgtgactatagttaacaatactgtattgtacacttgaaatttgctagaacataagtattttcaccacaaaaagaataactatgtgaggtgattgatatgttaattagtttgattgtggtcatctatttcacaatgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24874513 700 - 73212453 ctcttatacattgttggtgggaatgtaacttggtgcagccattatggaaaacagtatggaggctcctc-aaaaatcaaaaatagaactcacctgtgaaccagcaattccacttctggatatatatccaaagtaaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacaactactaagatacagaaatatctacatgcccatccacaga----tgagtggataaagaaaatgtatataaatgtcattattcacaatgcaattcagccttcaaaaagaaagaaatcctgtcatttataacaacatggatgaacccagaggacattaagctaagtgaaataagctagacacacaaagaccgatactgcgtgatctgacttatatggtggttgcctgaggtggaatgaggaagaaatgggtagatattgatcaaagagtataaagtttcagctatccaaaatcagtaagttctggaaattgaatgtatggcattgtgactatagttaacaatactgtattttacacttgaaatttgctagaacgtaagtattttcaccacaaaaagaataactatgtgaggtgattgatatgttaattagtttgattgtggtcatctatttcacaatgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48101814 705 - 81552678 ctcttatacattgttggtgggaatgtaacttgatgcagccattatggaaaactgtatggagggtcctcaaaaaattaaaaataaaactcacctgtgaaccagcaattccacttctggatatatatccaaaataaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacaactgctaagatacagaaacatctacgtgcccatccacagatgagtgagtggataaagaaaatgtgtataaatgtcattattcacaatgcaattcagcctttaaaaagaaggaaatcctatcatttataacaacatggatgaacccagaggacattaagctaagtgaaataagctggacacagaaagaccaatactacatgatctgacttatatggtggttgcctggggtagaatgaggaagaaatgggtagatgttggtcaaagagtataaagtttcggctatccaaaatgagtaagttctggaaattgaatgtatggcgatgtgactgtagttaacaatactgtattgtacacttgaagtttgctagaacacaagtattttcaccacaaaaagaataactatgtgaggtgattgatatgttaattagtttgattgtggtcatctatttcacaatgtatatatatatcaaagcattattttgtacaccttgaatatatgcaatttttacttgt i nomLeu3.chr19 I 320 C 0 s rheMac3.chr16 53209925 657 + 80904711 ctcttatacattattcgtgggaatgtaacttggtgcagccattatggaaaacagtatggaggctcctcaaaaaattaaaaatagaactcacctgtgaaccagcaattccacttctggatatatagccaaagtaaataaaatcactatcttgaagatatctgcacttgtgtgtacattgcagcattattcacaactgctaagatacagaaatacctacgtgcccatccacaga----tgagtggacaaagaaaatttatataaatgtcattattcacaatg-gattcagcctttaaaaaggag---accctgtcatttataacaacatggatgaacccagaggacattaagctaagagaaataagctggacacagaaagaccaatactgcatgatctgacttatatggtggttgcctggggtggaatgaggaagaaatgggtagatgttggtcaaagggtataaagtttcaactattcaaaataagtaagttctggaaattgaatgtacagcaatgtgactatagttaacaatact--------------------------------gtattttcaccacaaaaagag----tatgtgaggtgattgatat----gttagtttgattgtggtgatctatttcacaacgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52774354 661 + 80997621 ctcttatacattattcgtgggaatgtaacttggtgcagccattatggaaaacagtatggaggctcctcaaaaaattaaaaatagaactcacctgtgaaccagcaattccacttctggatatatagccaaagtaaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacaactgctaagatacagaaatacctacgtgcccatccacaga----tgagtggacaaagaaaatttatataaatgtcattattcacaatg-gattcagcctttaaaaaggag---accctgtcatttataacaacatggatgaacccagaggacattaagctaagtgaaataagctggacacagaaagaccaatactgcatgatctgacttatatggtggttgcctggggtggaatgaggaagaaatgggtagatgttggtcaaagggtataaagtttcaactattcaaaataagtaagttctggaaattgaatgtacagcaatgtgactatagttaacaatact--------------------------------gtattttcaccacaaaaagag----tatgtgaggtgattgatatgttagttagtttgattgtggtgatctatttcacaacgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47777934 660 + 74645514 CTCTTATACATTATAGGTGGGAATGTAACTTGgtgcagccattgtggaaaacagtatggaggctcctcaaaaaattaaaaatagaactcacctgtgaaccagcaattccacttctggatatatatccaaaggaaataaaatcactatCTTGAAGATATCTGCACTTGTATGtacattgcagcattattcacaactgCTAAGATACAGAAATACCTATGTGCCCATCCACAGA----TGAGTGgacaaagaaaatttatataaatgtcattattcacaatg-gattcagcctttaaaaaggag---acCCTGTCATttataacaacatggatgaacccagaggacattaagctaagtgaaataagctggacACAGAAAGACCAATACTGCATGATCTGACTTATATGGTGGTTGCCTGGGGTGGAATGAGGAAGAAATGGgtagatgttggtcaaagggtataaagtttcaACTATTCAAAATAAGTAAGTTCTGGAAATTGAATGTACAGcaatgtgactatagttaacaatact--------------------------------gtattttcaCCACAAAAAGAG----TATGTGAGGTGATTGATACGTTAGTTAGTTTGATTGTGGTGAT-TATTTCACAacgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10041360 661 - 75148670 ctcttatacattattggtgggaatgtaacttggtgcagccattatggaaaacagtatggaggctcctcaaaaaatgaaaaatagaactcacctgtgaaccagcaattccacttctggatatatatccaaagtaaataaaatcactatcttgaagatatctgcacttgtatgtacattgcagcattattcacaactgctaagatacagaaatacctacgtgcccatccacaga----tgagtggataaagaaaatttatataaatgtcattattcacaatg-gattcagccattaaaaaggag---accctgtcatttataacaacatggatgaacccagaggacattaagctaagtgaagtaagctggacacagaaaggccaatactgcatgatctgacttatatggtggttgcctggggtggaatgaggaagaaatgggtagatgttggtcaaagggtataaagtttcaactattcaaaataagtaagttctggaaattgaatgtacagcaatgtgactatagttaacaatact--------------------------------gtattttcaccacaacaagag----tatgtgaggtgattgatatgttaattagtttgattgtggtgatctatttcacaatgtatatgtatatcaaaacattattttgtacaccttgaatatatgcaatttttacttgt i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21526269 3457 + 61074082 I e calJac3.chr5 46182060 43331 - 159171411 I a score=1922279.000000 s hg38.chr17_JH159146v1_alt 228288 722 + 278131 caattatatctccaaaaagctTTCAAAAA--GCTAACAATAAATTCAACAATATGAAACACATGAGAAACATGCTGCCAGGATCTTAGAAGAGGGCAACTTAAGGGAGAGGTGGCTTGGGCAGAGAGCATCAGGAAAGGTTTGCTTGTGGAGGTAATAGCACCTAAGTCTTAAAGAACAAGTAGAATGGAGGTTCCTGCACAGTCTGTAGAACAGAATGAGAGAGTTCTC-ACCATTGTT---GAATAGATAAGTGAATGATGATCTATAGCTGTATAGGACTCCTAATTTCCGATTATATCAAACCCAACAAAGACCTTCCAA-AAGAACATTTCTGACCAATATAAAGCTCATCTGCACACATGGACCTGCT-ATTGTGATCCCACCTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCGATCCCTACATGACCCTGTGAATATTCTGAACATTGAAGACTGTGGCATTAGTGATTCACTTTTGC-------------------------------------------------------------------------------------------------TCT----------------------------------------ATTCTATTCTATTGGCATTATGTATTCCTAGGAGTATTGTATGTTGGGGCAATAATTCATTACTTGACTAACATATTACCTGAAATTCTGATGATCAGGTTACATCAT----AGAAAAGAATTAGGACAATGTCCTGAATATCTCCTACGCTTCCTAAATTTCTTGCTATAATTGATCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCCTGTACCG s panTro4.chr17 66350689 727 - 82630442 caattatatctccaaaaagctTTCAAAAA--GCTAACAATAAATTCAACAATATGAAACACATGAGAAACATGCTGCCAGGATCTTAGAAGAGGGCAACTTAAGGGAGAGGTGGCTTGGGCAGAGAGCATCAGGAAAGGTTTGCTTGTGGAGGTAACAGCACCTAAGTCTTAAAGAACAAGTAGTATGGAGGTTCCTGCATAGTCTGTAGAACAGAATGAGAGAGTTCTC-ACCACTGTT---GAATAGATAAGTGAATGATGATCTATAGCTGTATAGGACTCCTAATTTCCGATTATATCAAACCCAACAAAGACCTTCCAA-AAGAACATTTCTGGCCAACATAAAGCTCATCTGCACACATGGACCTGCT-ATTGTGATCCCACCTGTGAGTTACACAGGGCTTTTCAAGGCCCTAAGCCAATCCCTACATGACCCTGTGAATATTCTGAACATTGAAGACTATGGCATTAGTGATTCACTTTTGC--------------------------------------------------------------------------------------------tctattct----------------------------------------attctattctattGGCATTATGCATTCCTAGAAGTATTGTGTGTTGGGGCAATAATTCATTACTTGACTAACATATTACCTGAAATTCTGATGATCAGGTTACATCAT----AGAAAAGAATTAGGACAATGTCCTGAATATCTCCTACGCTTCCTAAATGTCTTGCTATAATTGATCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCCTGTACCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24875213 728 - 73212453 caattatatctccaaaaagctTTCAAAAA--GCTAACAATAAATTCAACAATATGAAACACATGAGGAACATGCTGCCAGGATCTTAGAAAAGGGCAACTTAAGGGAGAGGTGGCTTGGGCAGAGAGCATCAGGAAAGGTTTGCTTGAGGAGATAATAGCACCTAAGTCTTAAAGAACAAGTAGTATGGAGGTTCCTGCATAGTCTGTAGAACAGAATGAGAGAGGTCTC-ACCATTGTT---GAATAGATAAG----TGATGATCTATAGCTGTATAGGACTCCTAATTTCCGATTATATCAAACCCAACAAAGACCTTCCAA-AAGAACATTTCTGATCAATATAAAGCTCATCTGCACACATGGACCTGCT-ATTGTGATCCCATCTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCAATCCCTACATGACCCTGTGAATATTCTGAACATTGAAGACTGTGGCATCAGTGATTCACTTTTGC---------------------------------------------------------------------------------------tctattctattct----------------------------------------attctattctattGGCATTAAGCATTCCTGGGAGTATTGTGTGTTGGGGCAATAATTCATTACTTCACTAACATATTACCTGAAATTCTGATGATCAGGTTACATCAC----AGAAAAGAATTAGGACAATGTCCTGAATATCTCCTACGCTTCTTAAATTTCTTGCTATAATTGATCATCATACAACAAAATCTTGTTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCCTGTACCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48102519 810 - 81552678 caattatatctccaaaaagctTTCAAAaa--gctaaaaataaattcaacaatatgaaacacatgaggagcatgctagcaggatcttagaagagggtaacttaagggagaggtggcttgggcagagagcatcaggaaaggtttgctggaggaggtaatagcacctaagtcttaaagaacaagtagTATGGAAGTTCCTGCATAGTCTGTAGAACAGAATGAGAGAGGTCTCAACCATTGTT---GAATAGATAAGTGAATGATGATCTACAGCTTTATAGGACTCCTAATTTCCGATTATATCAAACCCAACAAAGGCCTTCCAA-AAGAACATTTCTGACCAATGTAAAGCTCATCTGCACACATGGACCTGCT-ACTGTGATCCCAACTGTGAGTTACACAGGGCTCTTCAAGGCCCTAAGCCAAT-CCTACATAACCCTGTGAATATTCTCAACATTGAAGACTGTGGCATCAGTGATTCACTTTTGCTCTATTCTATTCttctattctattctattctgttctgttctgtt-ctg----ttctg----ttctgttctgttctgttctgttctgttctattctattct----------------------------------------attctATTCCATTGGCATTATGCATTCCTGGGAGTATTGTGTGTTGGGGCAATAATTCATTACTTGACTGACATATTACCTGAAATTCTGATGATCAGGTTACATCAT----AGAAAAGAATTAGGACAATGTCCCGAATATCTCCTACACTTCTTAAATTTCTTGCTGTAATTTATCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCCTGTACCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53210582 742 + 80904711 caattatatctccaaaaagctTTCAAAaa--gctaaaaataaattcaacaatatgaaacacatgaggagcatgctaccaggatcttagaagagggcaggttaagggagaggtggcttgggccgagagtatcaggaaaggtttgctggaggaggtaatagcacttaagtcttaaagaacaagtaCTATGGAGGTTCCTGCATAGTCTGTGGAACAGAATGAGAGAGGTCTCAACCACTGTT---GAATAAATAAGTGAATGATAATCTACAGCTTTATAGGACTCCTAATTTCCAATTATATCAAACCCAACAAAGACCTTCCAA-AAGAGCATTTCTGACCAACATAAAGCTCATTTGCACGCAACGACCTGCT-ATTATGATCCCAACTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCAATCGCTACATGACCCTGTGAATATTCTGAACCTTGAAGACTGTGGCATTAGTGATTCGCTTTTGC-------------------------------------------t-ctc----ttctc----ttctcttct----------------------------------------------------------------------cttctcttctcttGGCATTATGCATTCCTGGGAGTATTGTGTGTTGGGACAGTAATTCATTACTTGACTGACATATTACCTGAAATTCTGATGATCAGGTTACATCATAGTCAGAAAAGAATTAGGACAATATCCTGAATATCTCCTATACTTCTTAAATTTCTTGCTGTAATTGGTCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCTTGTATCC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52775015 812 + 80997621 caattatatctccaaaaagctttcaaaaa--gctaaaaataaattcaacaatatgaaacacatgaggagcatgctaccaggatcttagaagagggcaggttaagggagaggtggcttgggccgagagtatcaggaaaggtttgctggaggaggtaatagcacttaagtcttaaagaacaagtaCTATGGAGGTTCCTGCATAGTCTGTGGAACAGAATGAGAGAGGTCTCAACCACTGTT---GAATAAATAAGTGAATGATAATCTACAGCTTTATAGGACTCCTAATTTCCAATTATATCAAACCCAACAAAGACCTTCCAA-AAGAGCATTTCTGACCAACATAAAGCTCATTTGCACGCAACGACCTGCT-ATTATGATCCCAACTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCAATCGCTACATGACCCTGTGAATATTCTGAACATTGAAGACTGTGGCATTAGTGATTCGCTTTTGC-------------------------------------------t-ctc----ttctc----ttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttcccttctcttctcttGGCATTATGCATTCCTGGGAGTATTGTGTGTTGGGACAATAATTCATTACTTGACTGACATATTACCTGAAATTCTGATGATCAGGTTACATCATAGTCAGAAAAGAATTAGGACAATGTCCTGAATATCTCCTATACTTCTTAAATTTCTTGCTGTAATTGGTCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCTTGTATCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47778594 786 + 74645514 caattatatctccaaaaagctttcaaaaa--gctaaaaataaattcaacaatatGAAACACATGAGGAGCATGCTACCAGGATCTTAGAAGAGGGCAGGTTAAGGGAGAGGTGGCTTGAGCCGAGAGTATCAGGAAAGGTTTGCTGGAGGAGGTAATAGCACTTAAGTCTTAAAGAACAAGTACTATGGAGGTTCCTGCATAGTCTGTGGAACAGAATGAGAGAGGTCTCAACCactgtt---gaataaataagtgaatgataATCTACAGCTTTATAGGACTCCTAATTTCCAATTATATCAAACCCAACAAAGACCTTCCAA-AAGAGCATTTCTGACCAACATAAAGCTCATTTGCACGCAACGACCTGCT-ATTATGATCCCAACTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCAATCGCTACATGACCCTGTGAATATTCTGAACATTGAAGACTGTGGTATTAGTGATTCGCTTttgc-------------------------------------------t-ctc----tcctcccctctctcttctcttctcttctcttctcttctcttctcttctcttctcttct------------------------------cttctcttctcttggcATTATGCATTCCTGGGAGTATTGTGTGTTGGGACAATAATTCATTACTTGACTGACATATTACCTGAAATTCTGATGATCAGGTTACATCATAGTCAGAAAATAATTAGGACAATGTCCTGAATATCTCCTATACTTCTTAAATTTCTTGCTGTAATTGGTCGTCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGTTTGTATCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10042021 762 - 75148670 caattgtatctccaaaaagctTTCAAAAA--GCTAAAAATAAATTCAACAATATGAAACACATGAGGAGCATGATACCAGGATCTTAGAAGAGGGCAGGTTAAGGGAGAGGTGGCTTGGGCCGAGAGTATCAGGAA-----------AGGAGGTAATAGCACTTAAGTCTTAAAGAACAAGTACTATGGAGGTTCCTGCATAGTCTGTGGAACAGAATGAGAGAGGTCTCAACCACTGTT---GAATAAATAAGTGAATGATAATCTACAGCTTTATAGGACTCCTAATTTCCAATTATATCAAACCCAACAAAGACCTTCCAA-AAGAGCATTTCTGACCAACATAAAGCTCATTTGCACACAATGACTTGCT-ATTATGATCCCAACTGTGAGTCACACAGGGCTCTTCAAGGCCCTAAGCCAATCGCTACATGACCCTGTGAATATTCTGAACATTGAAGACTGTGGCATTAGTGATTCACTTTTGC-------------------------------------------TCctc----ttctc----ttctcttctcttctcttctcttctcttctcttctcttct----------------------------------------cttctcttctATTGGCATTATGCATTCCTGGGAGTATTGTGTGTTGGGACAATAATTCATTACTTGACTGACATATTACCTGAAATTCTGATGATCAGGTTACATCATAGTCAGAAAAGAATTGGGACAATGTCCTGAATATCTCCTATACTTCTTAAATTTCTTGCTGTAATTGGTCATCATACAACAAAATCTTATTAATTT---------------GGGACATGTGCAGGCTAATTTTCCCTGGCTTGTATCC i chlSab2.chr16 C 0 C 0 s canFam3.chr9 21529726 716 + 61074082 CATTAGTATCT-TAAGAAGCTTAAGAAAAGTGCTGATAA-------AACAATGTAAAACACACAAGGAATATACT-CCAGAATATTAGAAG-----------AGGGAGAGGTAGTTTGGGTGGAGACTATCAGGAAGGGTTTGTTGGAGGAGGTATTAACACCAGAGTCTTAAAGAACAAGTACTATGGAGGTTCATGCATAGAGCCTGCAAGAGAATAGGGAAGCTTTCAACTGCTGTTTGAAAATATAACAATGAGTGACAATCTACAACTCTATAGGACTCTAGTTTTATGATTCTATCAAACCCAATAAAGACCTTTCAAGAAGAATATTTCTAACTAACATGTAGCTTATCTGCAAACATGGGCCTATTAATTATGATCCCAACTGTGAATCACTTGGGGGCTTTTAAGGCTGCAACACAATCCCTACATGATATTGTGCATATTCTAAACATTTAAGACTGTGAAATCAGTGACTCACTTTCAC-------------------------------------------T-CCCAGGACAGTA-----------------------------------------------------------------------------------ATTCAATTCTAAGGACATTATACATTCCTGGGAGTGTCATGTATTGGGGCAATAATCCATCAGTTGGCTGACACATTACCTGAA-----------------CCATCCC--TCAGAAAAGGATTAGGACAATGTCCTGAATGTCTCCTACATCCTTTAGATCTCTTGCTA----TGACATTTGCACAATAAAATATCATTAATTTGGACACATTCCATCAGGGACATGTGTAGGGTAATTTTTCCTGGCCTGCACCC i canFam3.chr9 I 3457 C 0 e calJac3.chr5 46182060 43331 - 159171411 I a score=431641.000000 s hg38.chr17_JH159146v1_alt 229010 125 + 278131 -AGGGAAAATTGGCATCTTCCACAAAATTCATG-------GACAAATTGGGAAGGTAAATGTAATTACAGAAGATATATTTAACCTAGCGTGAATGTACTTTGTGCTAATTGCAAGTGAATCA--TATTATTCTG s panTro4.chr17 66351416 125 - 82630442 -AGGGAAAATTGGCATCTTCCACAAAATTCATG-------GACAAATTGGGAAGGTAAATGTAATTACAGAAGATATATTTAACCTAGCGTGAATGTACTTTGCGCTAATTGCAAGTGAATCA--TATTATTCtg i panTro4.chr17 C 0 I 118 s ponAbe2.chr17 24875941 125 - 73212453 -AGGGAAAATTGGCATCTTCCAAAAAATTCATG-------GACAAATTGGGAAGGTAAATGTAATTACAGAAGATATATTTAACCTAGCGTGAATGTACTTTGTGCTAATTGCAAGTGAATCA--TATTTTTCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48103329 125 - 81552678 -AGTGAAAATTGGCATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTAAATGTAATTATGGAAGATATATTTAACCTAGCATGAATGTACTTTGTGCTAATTGCAAGTGAATCA--TATTATTCTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53211324 125 + 80904711 -AGGGAAAATTGGCATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTGAATGTAATTATAGAAGATATATTTAACCTAGCATGAATGCACTTTGTGCTGATTGCAAGTGAATCA--CATTATTCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52775827 125 + 80997621 -AGGGAAAATTGGCATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTGAATGTAATTATAGAAGATATATTTAACCTAGCATGAATGCACTTTGTGCTGATTGCAAGTGAATCA--CATTATTCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47779380 125 + 74645514 -AGGGAAAATTGGCATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTGAATGTAATTATAGAAGATATATTTAACCTAGCATGAATGCACTTTGTGCTGATTGCAAGTGAATCA--CATTATTCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10042783 125 - 75148670 -AGGGAAAATTGACATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTGAATGTAATTATAGAAGATATATTTAACCTAGCATGAATGCACTTTGTGCTGATTGCAAGTGAATCA--CATTATTCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112918471 118 + 159171411 -aGAAAAAAATGACATCTTCCAAAAAATTCATG-------GGCAAATTGGGAAGGTAAATGTAATTATAGAAGATATATTTAACCCAGC----ATGTACATTGTGCTAATTGCAAGTGAATCA--TATTATT--- i calJac3.chr5 I 2524 C 0 s canFam3.chr9 21530442 135 + 61074082 ACATGAAATTTGGCATCTTCAATAAAATTATTGTTTGTAAGGCAAATTGAGATGGTGAATATAATTACAGAAGTTATATTTAACTCAAAGTGGACCTACTTAACGCTAATTGCAAGTGAATCAGGTATTATTCTG i canFam3.chr9 C 0 C 0 a score=7896.000000 s hg38.chr17_JH159146v1_alt 229135 3 + 278131 TAC s ponAbe2.chr17 24876066 3 - 73212453 TAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48103454 3 - 81552678 TAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53211449 3 + 80904711 TAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52775952 3 + 80997621 TAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47779505 3 + 74645514 TAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10042908 3 - 75148670 TAC i chlSab2.chr16 C 0 C 0 s canFam3.chr9 21530577 3 + 61074082 TAC i canFam3.chr9 C 0 C 0 e calJac3.chr5 112918589 0 + 159171411 C e panTro4.chr17 66351541 118 - 82630442 I a score=299083.000000 s hg38.chr17_JH159146v1_alt 229138 95 + 278131 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGATGCTTAATTATG-TTTAAATGTATTGGGAAGAAGCTAAATGACATTATTATT s panTro4.chr17 66351659 95 - 82630442 ttgAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGATGCTTAATTATG-TTTAAATGTATTGGGAAGAAGCTAAATGACATTATCATt i panTro4.chr17 I 118 C 0 s ponAbe2.chr17 24876069 95 - 73212453 CTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGGTGCTTAATTATG-TTTAAATGTATTGGGAAGAAGCTAAATGACATTATTGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48103457 95 - 81552678 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGATGCTTAATTATG-TTTAAATGTATTGGGAACAAGCTAAATTACATTATTGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53211452 95 + 80904711 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTGTGATGCATAATTATG-TTTAAATGTATTGGGAACAAGCTAACTGACATCAGTATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52775955 95 + 80997621 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTGTGATGCATAATTATG-TTTAAATGTATTGGGAACAAGCTAACTGACATCAGTATG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47779508 95 + 74645514 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGATGCATAATTATG-TTTAAATGTATTGGGAACAAGCTAAATGACATcagaatg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10042911 95 - 75148670 TTGAGCCTTGAACCTCATCACTTAGAAGCATTCTTTAGCTATGATGTGTAATTATG-TTTAAATGTATTGGGAACAAGCTAAATGACATCAGTATG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112918589 76 + 159171411 -------------------ACTTAGAAGCATTCTTTAGGTACTATGCTTAATTATG-ACTAAATGTACTGGGGACAAGCTAACTCACTTTAttatt i calJac3.chr5 C 0 C 0 s canFam3.chr9 21530580 95 + 61074082 CTATGCCTTGAA-GTTATCACTTAGAAGCATTCTTTAGTTATGATTCTTAATTATGCTTTAAATGTGTTGGAAAGAAGCTAAAAGGCAATATTTTT i canFam3.chr9 C 0 I 71919 a score=314640.000000 s hg38.chr17_JH159146v1_alt 229233 109 + 278131 TTAtttc-----attttttaagttttgaggtacaagtgtgactttgttgcatgcatagattgcataattagcaagtcagagcttttaggccat---------catcacatgagtaacataaac s panTro4.chr17 66351754 108 - 82630442 ttatttc------ttttttaagttttgaggtacaagtgtgactttgttacatgcatagattgcataattagcaagtcagagcttttaggccat---------catcacatgagtaacataaac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24876164 109 - 73212453 TTATCtt-----attttttaagttttgaggtacaagtgtgactttgttacatgcatagattgcataattagcaactcagggcttttaggccat---------catcatatgagtaacataaac i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48103552 109 - 81552678 TTAtttt-----attttttaagttttgaggtacaagtgtgactttgttacatgcatagattgcataattagcaagtcagggcttttaggccat---------catcacatgagtaacataaac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53211547 109 + 80904711 ttatttt-----attttttaagttttgaggtacaagtgtgactttgttacatgcgtagattgcataattagcaagtcagggcttttaggccat---------catcacatgagtaacgtaact i rheMac3.chr16 C 0 I 26 s macFas5.chr16 52776050 109 + 80997621 ttatttt-----attttttaagttttgaggtacaagtgtgactttgttacatgcgtagattgcataattagcaagtcagggcttttaggccat---------catcacatgagtaacgtaact i macFas5.chr16 C 0 I 2 s papAnu2.chr16 47779603 108 + 74645514 ttatttt-----attttttaagttttgaggTAC-AGTGTGACTTTGTTACATGCGTAGATTGCATAATTAgcaagtcagggcttttaggcCAT---------CATCACATGAGTAACATAACT i papAnu2.chr16 C 0 I 2 s chlSab2.chr16 10043006 109 - 75148670 TTAtttt-----attttttaagttttgaggtacaattgtgactttgttacatgcatagattgcataattagcaagtcagggcttttaggccat---------catcacatgagtaacataact i chlSab2.chr16 C 0 I 26 s calJac3.chr5 112918665 122 + 159171411 ttattttattttattttTTAAGTTTTgaggtacaagtgcaa-tttgttacatgcatagattgtatagttggcaagtcagggcttttagggtatccatcagaccatcagctgagtaacataaat i calJac3.chr5 C 0 C 0 e canFam3.chr9 21530675 71919 + 61074082 I a score=8878.000000 s hg38.chr17_JH159146v1_alt 229342 9 + 278131 tgt--------acccat s panTro4.chr17 66351862 9 - 82630442 tgt--------acccat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24876273 9 - 73212453 tgt--------acccat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48103661 9 - 81552678 tgt--------actcat i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52776161 17 + 80997621 tgttatgagtaacacat i macFas5.chr16 I 2 I 7 s papAnu2.chr16 47779713 17 + 74645514 TGTTATGAGTAACACAT i papAnu2.chr16 I 2 I 7 s calJac3.chr5 112918787 9 + 159171411 tgt--------gcccat i calJac3.chr5 C 0 C 0 e canFam3.chr9 21530675 71919 + 61074082 I e chlSab2.chr16 10043115 26 - 75148670 I e rheMac3.chr16 53211656 26 + 80904711 I a score=1210827.000000 s hg38.chr17_JH159146v1_alt 229351 407 + 278131 taagtaatttctcattgtcaaccccactctcactctctaagctttctgagtgtccatggtctatcattctactctctatgtccatgtgcacacattatgtagcccccatgtgtgagaatatgcgatatttgtctttctgtgtctgatttgtttcatttaagataatgatctccagttccatccatgttgctgcaaaatacatgattttattatgattttatggtggaatagcattAAGTGACATTATTTTCTAAAGTCCAAGTCAACCAAATTAGTGTAGcctgcactttggggccatcattaagtaaaatgagggttatttgaaagcaagcactgcatatcctacagtactacaacagtcagtctggtaactgagataattactcggggattaaagggtg-gtcatg s panTro4.chr17 66351871 407 - 82630442 taagtaatttctcattgtcaaccccactctcactctctaagctttctgagtgtccatggtctatcattctactctctatgtccatacgcacatattatgtagcctccatgtgtgagaatatgcgatatttgtctttctgtgtctgatttgtttcatttaagataatgatctccagttccatccatgttgctgcaaaatacatgattttattatgattttatggcggaatagcattAAGTGACGTTATTTTCTAAAGTCCAAGTCAACCAAATTAGTGTAGcctgcactttggggccattattaagtaaaatgagggttatctgaaagcaagcactgcatatcctacaatactgcaacagtcagtctggtaactgagataattactcggggattaaagggtg-gtcata i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24876282 407 - 73212453 taagtaatttctcattgtcaaccccactctcactctttaagctttctgtgtgtccatggtctatcattctactctctatgtccatgcgcacacattatgtagcccccatgtgtgagaatatgtgatatttgtctttctgtgtctgacttgtttcatttaagataatgatctccagttccatccacgttgctgcaaaatacatgattttattatgattttatggcggaatagcattAAGTGATATTATTTTCTAAAGTCCAAGTCAACCAAATTAGTGTAGcctgcactttggggccattattaagtaaaatgagggttatctgaaagcaagcactgcatatcctacaatactgcaacagtcagtctggtaactgagataattacttggggattaaagggtg-gtcatg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48103670 407 - 81552678 taagtaatttctcattgtcaaccccactctcactctctaagctttctgagtgtccgtggtctatcattctactctctatgtccatgcgcacacattatgtagcccccatgtgtgagaatatgcgatatttgtctctctgtgtctgacttgtttcatttaagataatgatctccagttccatccatgttgctacaaaatatatgattttattatgattttatggcagaatagcattAAGTGACATTATTTTCTAAAGTCCAAGTCAACCAAATTAGTGTGGcctgcactttggggccattattaagtaaaatgagggttatttgaaagcaagcactgcatatcctacaatactgcaacagtgagtctggtaactgaggtaattactgggggattaaagggtg-gtcatg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53211682 407 + 80904711 taagtaatttctcattgtcaaccccactttcactctctaagctctctgagtgtccatagtctgtcattctattctctatgtccatgtgcacacatcatgtagcccccatgtgtgagaatatgcgatatgtgtccttctgtgtctgacttgtttcatttaagatgatgatctccagttccatccatgttgctacaaaatacatgattttattatt-ttttatggctgaatagtattAAGTGACATTATTTTCTAAAGTCCAAGCCAACCAAATTAGCCTAGcctgcactttggagccattattaagtaaaatgagggttatttgaacacaagcactacatatcctgcaatactgcaacagtcagtctggtaactgagataattatttggggattaaagggtgggtcatg i rheMac3.chr16 I 26 C 0 s macFas5.chr16 52776185 407 + 80997621 taagtaatttctcattgtcaaccccacttttactctctaagctctctgagtgtccatggtctgtcattctattctctatgtccatgtgcacacatcatgtagcccccatgtgtgagaatatgcgatatgtgtccttctgtgtctgacttgtttcatttaagatgatgatctccagttccatccatgttgctacaaaatacatgattttattatt-ttttatggctgaatagtattAAGTGACATTATTTTCTAAAGTCCAAGCCAACCAAATTAGCCTAGcctgcactttggagccattattaagtaaaatgagggttatttgaacacaagcactacatatcctgcaatactgcaacagtcagtctggtaactgagataattatttggggattaaagggtgggtcatg i macFas5.chr16 I 7 C 0 s papAnu2.chr16 47779737 407 + 74645514 TAAGTAATTTCTCATTGTCAACCCCACTTTCACTCTCTAAGCTCTCTGAGTGTCCATGGTCTgtcattctattctctatgtccatgtgcACACATCATGTAGCCCCCATGTGTGAGAATATGCGATatgtgtccttctgtgtctgacttGTTTCATTTAAGAtgatgatctccagttccatccatgttgctacaaaatacatgattttattatt-ttttatggctgaatagtattaaGTGACATTATTTTCTAAAGTCCAAGCCAACCAAATTAGCCTAGCCTGCACTTTggagccattattaagtaaaatgagGGTTATTTGAACACAAGCACTACATATCCTGCAATACTGCAACAGTCAGTCTGGTAACTGAGATAATTATTTGGGGATTAAAGGGTGTGTCATG i papAnu2.chr16 I 7 C 0 s chlSab2.chr16 10043141 406 - 75148670 taagtaatttctcattgtcaatcccactttcactctctaagctctctgagtgtccatggtctgtcattctattctctatgtccatgtgcacacatcatgtagcccccatgtgtgagaatatgcgatatgtgtccttctgtgtctgacttgtttcatttaagatgatgatctccagttccatccatgttgctacaaaatacatgattttattatt-ttttatggctgagtagtattAAGTGACATTATTTTCTAAAGTCCAAGCCAACCAAATT-GCCTAGcctgcactttggagccattattaagtaaaatgagggttatctgaacacaagcactacatatcctgcaatactgcaacagtcagtctggtaactgagataattattcggggattaaagggtgggtcatg i chlSab2.chr16 I 26 C 0 s calJac3.chr5 112918796 394 + 159171411 taagtaatttctcattgtcaacccctctctcaccctctaagctttctgagtgcccatggtctatcattccactctctatatccacgtgtacacattatttagctcccacgtatgagaaaatgtgatatttgtctctctgtgtctgatttgtttcatttaagataatgacctccagttccatccatattgctgcaaaagacatgatttcattatt-ttttatcactgaatggcattAAGTGATATTATTTTTTAAAGTCCAAGCCAACCAAATTAGTCTAGcctgcactttggggccattattaagtaaaatgagggttatttgaatacaaaca---------ctgcaatactgcagc----agtctggtaactgagacaattattctgggattaaagggtgggtCATG i calJac3.chr5 C 0 I 7793 e canFam3.chr9 21530675 71919 + 61074082 I a score=1261645.000000 s hg38.chr17_JH159146v1_alt 229758 538 + 278131 tatacagtatggacacagggaggacatttgtcccaggcaagacagagcaggattggtgatatttcatcatacaactcagaatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattaa-tacattagaaccgtggttgaccataagtaactgaaaccatggaaagtaaatccacagatagggaaggaatactgTAAtgctatgaagagagcattaagggtgattctggtcagggctcagaagaaaataatagctgtagggaaagtatgaatcttcttataggttatttaggtggtcgtggccagaatgctgagagaaatatggacaatagaggctattctgatgagatctcagatggaaatgaggaacaagaattggaaactggagtaaaggccatccttgttacaaagtggcaaaggacttgattgaattatgttcatgtctaaagacttt-acggaaggcagagttaaagaaagatgaacaagtatatcgggggaagaaatttccaagaaaaatgttgaagga s panTro4.chr17 66352278 539 - 82630442 tatacagtatggacatggggaggacatttgtcccaggcaagactgagcaggattggtgatatttcatcatacaactcagaatggcatgcaattgaaaacttacaaattgtttatttctggaatcttccattaaatacattagaaccgtggttgaccataagtaactgagaccatggaaagtaaatccacagatagggaaggaatactgTAAtgctatgaagagagcattaagggtgattctggtcagggctcagaagaaaataatagctgtagggaaagtatgaatcttcttatagattatttaggtggtcgtggccagaatgctgagagaaatatggacaatagaggctattctgatgagatctcagatggaaataaggaacaagaattggaaactggagtaaaggccatccttgtcacaaagtggcaaaggacttgattgaattatgttcatgtctaaaggcttt-atggaaggcagagttaaagaaagatgaacaagtatatcgggggaagaaatttccaagaaaaatgttgaagga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24876689 538 - 73212453 tatacagtatggacacagggaggacatttgtcccaggcaagacagagcaggattggtgatatttcatcatacaactcagaatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattaaatatattagaaccatggttgaccataagtaactgaaaccatggaaggtaaatccacagatagggaaggactactataatgctatgaagagagcattaagggtgattctggtcagggctcagaagaaaataatagctgcagggaaagtctgaatcttctcatagatta-ttagatagtcatggccggaatgctgagagaaatatggacaatagaggctattctcatgagatctcagatggaaatgaggaacaagaattggaaactggagtaaaggccatccttgttacaaagtggcaaaggacttgattgaattatgttcatgttcaagggcttt-acagaaggcagagttaaagaaagatgaactagtgtatcgggggaagaaatttccaagaaaaatgttgaagga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48104077 539 - 81552678 tatacagtatggacacagggaggacatttgtcctaggcaagacagagcaggattggtgatatttcgtcatacaactcagaatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattcactatattagaaccatggttgaccataagtaactgaaactgtggaaattaaatccacagatagggaaggactactgTAATGCTATGAAGAGAGCATTAAGGGTGATTCTGGTCagggctcagaagaaaataatagctgtagggaaagtctgaatcttcttatagattagttaggtggttatggccagagtgctgagagaaatatggacaatagaggctattctgatgagatctcagacggaaatgaggaacaaaaattggaaactggagtaaaggccatccttgttacaaagtggcaaaggacttgattgaattatgttcatgtccaagggcttt-acggaaggcagagttaaagaaagatgaaccagtatatcgggggaagaaatttccaagaaaaatgttgaagga i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53212089 539 + 80904711 tatacagtgtggacacagggatgacatttgtcccatgcaagacagagcaggattggtgatatttcatcttacaactcaggatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattaaatatattaggaccatggttgaccgcaagtaactgaaactgtggaaagtaaatccacagatagggaaggactactgtaatgccaggaacagagcattaagggtgattctggtcaaggctcaggagaaaagaatagctgtaggggaagtctgaatcttcttatagattatttaggtggtcatgaccagaatgctgagagaaatatggacagtagaggctattctgatgagatctcagatggaaatgaggaacaataattggaagctggaggaaagaccatccgt-ttacaaagtggcaaaggacttaactgaattatgttcatgtccaagggcctgaacagagggcagagtttaagaaagatgaagcagtatattgggggaagaaatttctaagaaaaatgttgaagga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52776592 539 + 80997621 tatacagtgtggacacagggatgacatttgtcccatgcaagacagagcaggattggtgatatttcatcttacaactcaggatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattaaatatattaggaccatggttgaccgcaagtaactgaaactgtgtaaagtaaatccacagatagggaaggactactgtaatgccaggaacagagcattaagggtgattctggtcaaggctcaggagaaaagaatagctgtaggggaagtctgaatcttcttatagattatttaggtggtcatgaccagaatgctgagagaaatatggacagtagaggctattctgatgagatctcagatggaaatgaggaacaataattggaagctggaggaaagaccatccgt-ttacaaagtggcaaaggacttaattgaattatgttcatgtccaagggcctgaacagagggcagagtttaagaaagatgaagcagtatattgggggaagaaatttctaagaaaaatgttgaagga i macFas5.chr16 C 0 I 56 s papAnu2.chr16 47780144 539 + 74645514 TATACAGTGTGGACACAGGGATGACATTTGTCCCATGCAAGACAGAGCAGGATTGGTGATATTTCATCTTACAACTCAGgatggcatgcaatttaaaacttacaaattgtttatttctggaatattcCATTAAATATATTAGAACCATGGTTGACCGcaagtaactgaaactgtggaaagtaaATCCACAGATAGGGAAGGACTACTGTAATGCCAGGAACAGAGCATTAAGGGTGATTCTGGTCAAGGCTCAGGAGAAAAGAATAGCTGTAGGGGAAGTCTGAATCTTCTTATAGATTATTTAGGTGGTCATGACCAGAATGCTGAGAGAAATATGGATAGTAGAGGCTATTCTGATGacatctcagatggaaatgaggaacaatAATTGGAAGCTGGAGGAAAGACCATTCGT-TTACAAAGTGGCAAAGGACTTAATTGAATTATGTTCATGTCCAAGGGCCTGAACAGAGGGCAGAGTTTAAGAAAGATGAAGCAGTATATtgggggaagaaatttctaagaaaaatgtTGAAGGA i papAnu2.chr16 C 0 I 56 s chlSab2.chr16 10043547 539 - 75148670 tatacagtgtggacacagggatgacatttgtaccatgcaagacagagcaggattggtgatatttcatcttacaactcaggatggcatgcaatttaaaacttacaaattgtttatttctggaatcttccattaaatatattaggaccatggttgaccgcaagtaactgaaactgtggaaagtaaatccacagatagggaaggactactgTAAtgccaggaacagagcattaagggtgattctggtcaaggctcaggggaaaagaatagctgtaggggaagtctgaatcttcttatagattatttaggtggtcatgaccagaatgctgagagaaatatggacagtagaggctattctgatgagttctcagatggaaatgaggaacaataattggaagctggaggaaagaccatccgt-ttacaaagtggcaaaggacttaattggattatgttcatgtccaagggcctgaacagtgggcagagtttaagaaagatgaagcagtatattgggggaagaaatttctaagaaaaatgttgaagga i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21530675 71919 + 61074082 I e calJac3.chr5 112919190 7793 + 159171411 I a score=61626.000000 s hg38.chr17_JH159146v1_alt 230296 57 + 278131 gctgattggtgtctttgaactgcgtatagtaaaatgcaagaggaaagaaacgattta s panTro4.chr17 66352817 57 - 82630442 gctgattggtgtctttgaactgcgtatagtaaaatgcaagaggaaagaaacgattta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24877227 57 - 73212453 gctgcttggtgtctttgaactgcatatagtaaaatgcaagaggaaagaaacgattta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48104616 57 - 81552678 gctgcttggagtctgtgaactgcgtatagtaaaatgcaagaggaaagaaatgattta i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53212628 56 + 80904711 gctgcatagcatctttgaacttcatatagtaaaatgcgagaggaaacaaatgattt- i rheMac3.chr16 C 0 C 0 s chlSab2.chr16 10044086 56 - 75148670 gctgcatagcatctttgaacttcatatagtaaaatgcaagaggaaacaaatgattt- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21530675 71919 + 61074082 I e calJac3.chr5 112919190 7793 + 159171411 I e papAnu2.chr16 47780683 56 + 74645514 I e macFas5.chr16 52777131 56 + 80997621 I a score=130563.000000 s hg38.chr17_JH159146v1_alt 230353 55 + 278131 aaggtggaattcgcaattaaaagggaaacagagaatatagatgtagaaaatgtgc s panTro4.chr17 66352874 55 - 82630442 aaggtggaattcacaattaaaagggaaacagagaatatagatgtagaaaatgtgc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24877284 55 - 73212453 aaggtggaattcacaattaaaagggaaacagaaaatatagatgtagaaaatgtgc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48104673 55 - 81552678 aaggtggaattcacaattaaaagggaaacagaaagtatagatgtagaaaatgtgc i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53212684 55 + 80904711 aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgc i rheMac3.chr16 C 0 I 13 s macFas5.chr16 52777187 55 + 80997621 aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgc i macFas5.chr16 I 56 C 0 s papAnu2.chr16 47780739 55 + 74645514 AAGGTGGAATTCATAATTAAAAGGGAGACAGAACATAAAGATGtagaaaatgtgc i papAnu2.chr16 I 56 C 0 s chlSab2.chr16 10044142 55 - 75148670 aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgc i chlSab2.chr16 C 0 I 13 e canFam3.chr9 21530675 71919 + 61074082 I e calJac3.chr5 112919190 7793 + 159171411 I a score=10448.000000 s hg38.chr17_JH159146v1_alt 230408 9 + 278131 cacctgacc s panTro4.chr17 66352929 9 - 82630442 agcctgacc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24877339 9 - 73212453 agcctgacc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48104728 9 - 81552678 agcctgacc i nomLeu3.chr19 C 0 I 4 s macFas5.chr16 52777242 9 + 80997621 agcctggcc i macFas5.chr16 C 0 I 4 s papAnu2.chr16 47780794 9 + 74645514 agcctggcc i papAnu2.chr16 C 0 I 4 e canFam3.chr9 21530675 71919 + 61074082 I e calJac3.chr5 112919190 7793 + 159171411 I e chlSab2.chr16 10044197 13 - 75148670 I e rheMac3.chr16 53212739 13 + 80904711 I a score=273.000000 s hg38.chr17_JH159146v1_alt 230417 1 + 278131 a s panTro4.chr17 66352938 1 - 82630442 a i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24877348 1 - 73212453 a i ponAbe2.chr17 C 0 I 3 e canFam3.chr9 21530675 71919 + 61074082 I e calJac3.chr5 112919190 7793 + 159171411 I e chlSab2.chr16 10044197 13 - 75148670 I e papAnu2.chr16 47780803 4 + 74645514 I e macFas5.chr16 52777251 4 + 80997621 I e rheMac3.chr16 53212739 13 + 80904711 I e nomLeu3.chr19 48104737 4 - 81552678 I a score=20253.000000 s hg38.chr17_JH159146v1_alt 230418 222 + 278131 acaatgagaacacgtggtcacaggaaggggaacatcacacaccagggactgttgtggggtggggggaggggggagggttaccattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacacgaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgttccctaaaacttaaagtataataataataaaattttaaaa s panTro4.chr17 66352939 222 - 82630442 acaatgagaacacatggtcacaggaaggggaacatcacacaccagggactgttgtggggtggggggaggggggagggttagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctaaaacttaaagtataataataataaaattttaaaa i panTro4.chr17 C 0 C 0 e ponAbe2.chr17 24877349 3 - 73212453 I e canFam3.chr9 21530675 71919 + 61074082 I e calJac3.chr5 112919190 7793 + 159171411 I e chlSab2.chr16 10044197 13 - 75148670 I e papAnu2.chr16 47780803 4 + 74645514 I e macFas5.chr16 52777251 4 + 80997621 I e rheMac3.chr16 53212739 13 + 80904711 I e nomLeu3.chr19 48104737 4 - 81552678 I a score=3513171.000000 s hg38.chr17_JH159146v1_alt 230640 1214 + 278131 aaagaatgaaaaagcatgcaagggtgtggccaagtgatgctttgatacaaggattgataagaatagaaggaagctaggtgctgttcatcagatcaatgggagaatggctctgaaggcatttcagagatcgttgaagctatccctcccatcacaggctccaaatgagagaatcttcaggtcagaaagggcttggtactctccacattctaacacagtgcccctttgctgctccagttgtggctcaagtgggcttagatgagacttgtgctgctgctgcagaggccacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagactgcaggagttgtggggcaatggtggt--ccacctaggtttgaaaggatgtttctgacagcctgccttagggttgtagccacagcagaaaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgtagaactatcagcctgcaatactagcctgagagag-ctgca-gcagagactccaatcagatagctgctgtatgggctgagcccagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaagg-ccccaggcagcccttccccatgtcgggcacatccaggagacagcacatggagtcgaagtttattc------tccagtcttaagatttaatgctgtctt-ccctgttggactcacctggggccagttaccc-ttttttctttcctgttgctcccttttggaatgggcctgtctatcctatgcctctcccaccattggattttggaactagataacttctttaataggctcacatatggaggagaatttgcctcaggataagtcctgtg-ttgagtctcattcatatcagagtcacctgagactcttagatttacattttgac-ttttaagttggtgatggaac-----atgactttgggactattgggataaaaggaatatattttgtgtatgagaaggacatggatttgggggaccaagggtggaatgcaatggtatgaatgtgtc---------cctcaaagttcatgtgttggaaacttgatcctcaatgcagcagtgttgggaggtggggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattaatgttgttattacaagagtgggttccttataaaaggatgagtttgactcct s panTro4.chr17 66353161 1214 - 82630442 aaagaatgaaaaagcatgcaagggtgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcagatcaatgggagaatggctctgaaggcatttcagagatcgttgaagctatccctcccatcacaggctccaaatgagagaatcttgaggtcagaaaggacttggtactctccacattctagcacagtgcccctttgctgctccagttgtggctcaagtgggcttagatgagacttgtgctgctgctgcagaggccacaaactgtgagccttggtgatgttcatgtagtactgactgtagatacacagactgcaggagttgtggggcaatggtggt--ccacctaggtttgaaaggatgtttctgacagcctgccttagggctatagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaacggtagaactatcagcctgcaatactagcctgagagag-ctgca-gcagagactccaatcagatagctgctgtatgggctgagcctagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaagg-ccccaggcagcccttccccatgtcgggcacatccaggagacagcacatggagtcgaagtttattc------tccagtcttaagatttaatgctgtctt-ccctgttggactcacctggggccagttaccc-ttttttctttcctgttgctcccttttggaatgggcctgtctatcctatgcctctcccaccattggattttggaactagataacttctttaataggttcacatatggaggagaatttgcctcaggataagtcctgtg-ttgagtctcattcatattagagtcacatgagactcttagatttacattttgac-ttttaagttggtgatggaac-----atgactttgggactattgggataaaaggaatatattttgcgtatgagaaggacatggatttggggggccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaagttcatgtgttggaaacttgatcctcaatgcagcagtgttgggaggtggggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattaatgttgttatcacaagagtgggttccttataaaaggatgagtttgactcct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24877352 1213 - 73212453 aaagaatgaaaaagcatgcaagggtgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgttgttcatcaaatcaatgggagaatgactctgaaggcatttcagagactgttgaagctatccctcccatcacaggctccaaatgagagaatcttgaggtcagaaagggcttggtgctctccacattctagcacagtgcccctttgctgctccagttgtggctcaagtgggcttagatgagacttgcgctgccgccgcagaggccacaaactatgagccttggtggcgttcatgtagtactgactgtagatacacagactgcaggagttgtggggccatggtggt--ccacctaggttagaaaggatgtttctgacagcctgccataggggtgcagccacagcagagaggtcttcttagaaccatgctcaggaaaatgggg------ggttagagcagccactgagaccctagaactgtagaactatcagcctgcaatactagcctgagagag-ctgcaggcagagactccaatcagatagctgctgtatgggctgagcccagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaaggcccccaagcagccctgctccatggcggacacgtccaggaggcagcacatggagtcgaaggttattc------tccagtcttaagatttaatgctgtctc-ccctgttggactcacttggggccagttaccctttttttctttcctgttgctcccttttggaatgggcctgtctgtcctatgcctcttccaccgttggattttggaactagataacttctttaatagggtcatatatggaggagaatttgcctcaggataagtcctgtg-ttgagtctcattcatatcagatttacatgacactcttagatttacattttgac-ttttaagttggtgctggaac-----atgaccttggaattattgggataaaatgaacatattttgcatatgagaaggacatggatttggggggccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaagttcatgtgttggaaacttgatcctcaaagcagcagtgttgggaggt-gggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattaatgttgttatcacaagagtgggttccttataaaaggac---tttgactcct i ponAbe2.chr17 I 3 C 0 s nomLeu3.chr19 48104741 1202 - 81552678 aaagaatgaaaaagcatgcaagggtgtggccaagtaatcctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcaaatcaatgggagaatgactctgaaggcatttcagagattgttgaagctattcctcccatcgcaggctccgaatgagagaatcttgaggtcagaaagggcttggtactctccacattctagcacagcgcccctttgctgctccagttgtggctcaagcaggcttggatgaaacttgtgctgctgctgcagagggcacaaactataagccttggtggcgttcatgtagtactgactatagatacacaggctgcaggagttgtggggccatggtggt--ccacctaggtttgaaaggatgtttctgacagcctgccataggggtgtagccacagcagagaggtcctcttagagccatgctcaggaaaacaggg------ggtcagagcagccactgagaccctagaactgtagaactatcagcctgcaatactagcctgagagag-ctgcaggcagagactccaatcagatagctgctgcatgggctgagcccagtaaagccatggggcagggctatctgaaggcatttggggcctaacactatgt----------------gcccatggcgggcacatccaggaggcagcacatggagtcaaaggttattc------tccagtcttaagatttaatgctgtctcaccctgttggactcatctggggccagttaccctttttttctttcctgttgctcccttttggaatgggcctgtctatcctatgcctcttccaccattggattttggaactagctaacttctttaataggttcacatatggaggagaatttgcctcaggataagccctgtg-tttagtctcattcatatcagatttacatgacactcttagatttacattttgac-ttttaagttggtgctggaac-----atgactttgggactattgggataaaatgaatatattttgcctatgagaaggacatggatttggggggcctagggTGGAAtgcaatggtttgaatgtgtc---------cctcaaagttcacgtgttggaaacttgatcctcaatgcagcagtgttgggaggtggggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattagtgttgttatcacaagagtaggttccttatgaaaggatgactttgactcct i nomLeu3.chr19 I 4 I 26 s rheMac3.chr16 53212752 1205 + 80904711 aaagaatgaaaaggcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagccatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagagcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagacgagacttgcgctgccactgcaaagggcacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgtggggccatggcggt--ccacctaggtttgaaaggatgtttccgacagcctgccacaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgcagaactatc-------------agcctgagagagcctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgaggggctttggggcctaacaccaaggcccccaggcagcccagccccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattc------tccagttttaagatttaatgctgtctt-ccctgttggactcgcttggggccagttaccc-ttttttctttcctgttgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagaatttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttggaactattggaataaaatgaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgctggacacttgatcctcaatgcggcggtgctgggaggcggcgcccaac---agatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgggttccttataaaaggatgattttgactccc i rheMac3.chr16 I 13 C 0 s macFas5.chr16 52777255 1205 + 80997621 aaagaatgaaaaggcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagccatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagagcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagacgagacttgcgctgccactgcaaagggcacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgtggggccatggcggt--ccacctaggtttgaaaggatgtttccgacagcctgccacaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgcagaactatc-------------agcctgagagagcctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgaggggctttggggcctaacaccaaggcccccaggcagcccagccccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattc------tccagttttaagatttaatgctgtctt-ccctgttggactcgcttggggccagttaccc-ttttttctttcctgttgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagaatttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttggaactattggaataaaatgaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgttggacacttgatcctcaatgcggcggtgctgggaggcggcgcccaac---agatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgggttccttataaaaggatgattttgactccc i macFas5.chr16 I 4 C 0 s papAnu2.chr16 47780807 1215 + 74645514 aaagaatgaaaaagcatGCAAGGATGTGGCCAAGTGATGCTTTGATACAAGGATTGATATGAATAGAAGGAAGCTAGGTGCTGTTCATCACATCAATGGGAGAATGGCTCTGAAgccatttcagagatctttgaaGCTGTCCCTCTCATCATAGGCTCCAGATAAGAGAACCTTGAGGTCAGAAAGAGCTTGGTACTCCCCACATTCTAGCACAGTGCCCCTTTGCTGCTACAGTTGCGGTTCAAGTGGGCTTAGATGAGACTTGCACTGCCACTGCAAAGGGCACAAACTGTGAGCCTTGGTGGTGTTCATGTAGTACTGACTGTAGATACACAGAGTGCAGGAGCTGTGGGGCCATGGCGGT---CACCTAGGTTTGAAAGGATGTTTCCGACAGCCTGCCACAGGGGTGTAGCCACAGCAGAGAGGTCCTCCTAGGGCCATGCTCAGGAAAACGGGG------GGTCAGAGCAGCCACTGAGACCCTAGAACCGCAGAACTATC-------------AGCCTGAGAGAG-CTGCAGGCAGAGACTCCAATCAGATTGCTGCTGCATGGGCTGAGCCCAGCAAAGCCACAGGGCAGAGCTATTTGAGGGCCTTTGGGGCCTAACACCAAGGCCCCCAGGCAGCCCAGCCCCGTGGCAGGCATGTCCAGGAGGCAGCACATGGAGTCAAAGGTCATTC------TccagttttaagatttaatgctGTCTT-CCCTGTTGGACTCGCTTGGGGCCAGttaccc-ttttttctttcctgttgctcccttttggaatgggccTGTCTATACTATGCCTCTCCCAGTATCGGATTTTGGAACTAGATAACTTCTTTAATAGGTTCACATGTGGAGGAGAATTTGCCTCAGGATAAGTCCTGTG-TTGTGTCTCACTCATATCAGATTTAGATGACACTCTTAGATTtacattttgac-ttttaagttggttctggaacaagttaagactttggaacTATTggaataaaatgaacacattctGTGTATGAGAAGGACATGGATTTGGGGG-CcaagggtggaatgcagtggtttgaatgtgtccctcaaAATCCTCAAAATTCACGTGTTGGACACTTGATCCTCAATGCGGCAGTGCTGGGAGGTGGCGCCCAAcaggagatgtttgggtcatggtgaCACCACCCTCATGAGTGGATTCATGTTGTTATCACAAGAGTGGGTTCCTTATAAAAGGATGATTTTgactccc i papAnu2.chr16 I 4 C 0 s chlSab2.chr16 10044210 1212 - 75148670 aaagaatgaaaaagcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagtcatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagggcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagatgagacttgcgctgccactgcaaagggcacagactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgt-gggccatggtggt--ccacctaggtgtgaaaggatgtttccgacagcctgccacagtggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggggggggcggtcagagcagccaccgagaccctagaactgtagaactatc-------------agcctgagagag-ctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgagggcctttggggcctaacaccaagtcccccaggcagcccagtcccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattc------tccagttttaagatttaatgctgtctt-ccctgttggactcgcttggggccagttaccc-ttttttctttcctgtcgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagagtttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttgggactattggaataaaaggaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgttggacacttgatcctcaatgcggcggtgctgggaggtggcgcccaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgtgttccttataaaaggatgattttgactccc i chlSab2.chr16 I 13 C 0 s calJac3.chr5 112926983 1209 + 159171411 aaagaatgaaaaagcatgcaaggatgtggccaagtgatgctttgatataagggttgatacaaatagaaggaagctaggtgtcatttatcaaatcaatgggagaatgactctgaaggcatttcagagatctttgaagctgtccctcccatcacaggctacaaatatgagaatcttgagatcagaaagggcttggtactctccacattctaccacaatg-cccttggctgctccagttgtggctaaagtgggcttagatgagacttgtgctgccattgcagagggcacaaactgtgagtcttggtggcattcacatagtactgactgtaaacacacagactgcaggagttgtgggaccatggtgctctccacctaggtatcaaaggatgtttctgaca-cctgtcacaggggtgtagccactgcagagagctcctcctaggaccatgctcagg-gaactagg------ggtcagagcagccactgagaccctagaactatagaactatcagcctgcaatactagcctgagagag-ctacaggcagagacaccaatcaaacagctgctgcatggactgagcccagtaaagtcatggagcaaggctgtctgagggcctttggggcctgacaccaagacccccaggcagccctgccccatggtaggcatgtccaagag--agcacacggagtcaaaggttattctgcagttgcagtcttaagatttaacgctgtttt-ccctgtcggactcacctggggccagttaccc-ttttttctttcctgttgctcccttttgaaatagggatgtctgtcctatgcctgtcccactgttgtattttggaactaggtaacttctttaataggttcacatatgaaggagaatttgcctcaggataagtcctgggtttgaatctcactcatatcagatttagatgaga--cttagatttacattttgactttttaagttggtgctggaacaagttaagactttgggactatt----------gaatatatattgcatatgagaaggacatggatttggggggccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaaggtcatgtgctggaaacttgatttccaa----gcagtgttggtggg-ggggcctcacaggagatatgtgggtcatggtgacgccaccctcatgagtgaattaatgtttttatcacgagactgggttccttataaaaggatgagtttggctccc i calJac3.chr5 I 7793 C 0 e canFam3.chr9 21530675 71919 + 61074082 I a score=53327.000000 s hg38.chr17_JH159146v1_alt 231854 23 + 278131 tctttctctgtctcaccctctc---t s panTro4.chr17 66354375 23 - 82630442 tctttctctgtctcaccctctc---t i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24878565 26 - 73212453 tctttctctgtctcaccctctctttt i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53213957 26 + 80904711 tctttctctgtctcaccctctctttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52778460 26 + 80997621 tctttctctgtctcaccctctctttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47782022 26 + 74645514 tctttctctgtctcaccctctccttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10045422 26 - 75148670 tctttctctgtcttaccctctctttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112928192 23 + 159171411 tctttctctgtctcaccctctct--- i calJac3.chr5 C 0 I 3 e canFam3.chr9 21530675 71919 + 61074082 I e nomLeu3.chr19 48105943 26 - 81552678 I a score=443146.000000 s hg38.chr17_JH159146v1_alt 231877 159 + 278131 cccttccacaatgggataacATGGTATTCCTGGTTATCTATAACCAAGTCTCATTCTATAAACGGAATCCTAA-TTCCACAAGGTTCCACATATGCTATTTATCAGGGGACATGTTGCTTACCACATAAATAATTGTAGTTTTCCTGAAATGAAACTCTG s panTro4.chr17 66354398 159 - 82630442 cccttccacaatgggataacATGGTATTCCTGGTTATCTGTAACCAAGTCTCATTCAATAAACAGAATCCTAA-TTCCACAAGATTCCACATATGCTATTTATCAGGGGACATGTTGCTTACCACATAAATAATTGTAGTTTTCCTGAAATGAAACTCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24878591 160 - 73212453 cccttccacaatgggatgacATGGTATTCCTGGTTATCTATAACCAAGTCTCATTCTATAAACGGAATCCTAACTTCCACAACTTTCCACATATGTTATTTATCAGGGGACATGTTACCTACCACATAAATAAGTGTAGTTTTCCTGAAATGAAACTCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48105969 160 - 81552678 cccttccacaatgggatgacacggtaTTCCTGGTTATTTATAACCAAGTCTCATTCTATAAACGGAACCCTAACTTCCACAACTTTCCACATATGTTATTTATCAGGGGACATGTTACTTACCACATAAATAAGTGTAGTTTTCCTGAAATGAAACTCTG i nomLeu3.chr19 I 26 C 0 s rheMac3.chr16 53213983 155 + 80904711 cccttccacaatgtgatgacacagtaTTCCTGGTTATCTATAACTAAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCCGCATATACTGTTTATCAGGGGACATGTTACTTACCATAGAAAT-----TAGTTTTCCTAAAATTAAACTCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52778486 155 + 80997621 cccttccacaatgtgatgacacagtaTTCCTGGTTATCTATAACTAAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCCGCATATACTGTTTATCAGGGGACATGTTACTTACCATAGAAAT-----TAGTTTTCCTAAAATTAAACTCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47782048 160 + 74645514 cccttccacaATGTGATGACACAGTATTCCTGGTTATCTATAACCAAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCCACATATACTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTAAAATGAAACTCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10045448 160 - 75148670 cccttccacaatgtgatgacacagtaTTCCTGGTTATCTATAACCAAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCCACATATACTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTAAAATGAAACTCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112928218 158 + 159171411 cccttccacaatgggatgacATGGTATTCCTGGTTATCTATAAACATGTCTCATTCTATAAATGGAATCCTAACTTCCACAACTTTCCACATATGCTATTTA-CTGGGGACACGTTACTTACCATATAAGTAAGT-TTGTTTTCCAGAAATGAAACTCTG i calJac3.chr5 I 3 C 0 e canFam3.chr9 21530675 71919 + 61074082 I a score=2548469.000000 s hg38.chr17_JH159146v1_alt 232036 899 + 278131 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAACGATA-TATACAT----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AAAGCCttcattcattcaacaaacatttatttccggtgttctctgtgctgagtatcatggtaacaaaaagaaaagtcatagcccatgccttcaggctatttgcattgcatatgggggaatgaaagaagtaaa-cgtctat-gatacagtagaatgtatcacattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtagtttatcaggaaagatattactgaggaggaaata-ttta-actgggttttgacaaatgagtaggagtttgcagagtggac----a---aaaaaagacgacacattccaagaagatgaagcagTTTCAGCAAGCTTAGCAAATT-TTGTTCTTTACCACTTTCTTGGCTACACTAAGACATATTAGacttactttctctttaatcttggacaagcatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagca-ataagaatgtacactactttata-aggttgtaataaagagtgaa-aatgaaa-------aagatatttagcacaatgtctggtacatagtcaatacttcacaagtAATATACATACCCTGAGGATGTATGGAACTGATCCACATACTATACATTTTTATTTTAGTTGTTTAATGAACATAATTGTAATT------------CTTTTCATTTTTGCCAAATTCTGTTTCTTATGCA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAA s panTro4.chr17 66354557 899 - 82630442 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAATGATA-TATACAT----TTTTAAAGGAC-CTTACATGATTCTATGTCATCAA-AAAGCCttcattcattgaacaagcatttatttccggtgttctctgtgctgagtatcatggtaacaaaaagaaacatcatagcccatgccttcaggctatttacattgcatatgggggaatgaaagaagtaaa-cgtctat-gatacagtagaatgtatcacattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtagtttatcaggaaagatattgttgaggaggaaata-ttta-actgggttttgacaaatgagtaggagtttgcagagtggac----a---aaaaaagacgacacattccaagaagatgaagcagTTTCAGCAAGCTTAGCAAATT-TTATTCTTTACCACTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaatcttggacaagcatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagca-ataagaatgtacattactttata-aggttgtaataaagagtgaa-aattaaa-------aagatatttagcacaatgtctggtgcatagtcaatacttcacaagtAATATACATACCCTGAGGATGTATGGAACTTATCCACATACTATACATTTTTATTTTAGTTGTTTAATGAACATAATTGTAATT------------CTTTTCATTTTTGCCAAATTCTGTTTCTTATGCA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCGTATTATTG-------AAGGCTTAATAATTCTAAATATTATTGACATATAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24878751 898 - 73212453 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCGGAAGTCAAAAGATA-TATACAT----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AGAGCCttcattcactcaacaaacatttattactggtgttctctgtgctgagtatcacggtaacaagaataaatgccatagcccatgccttcggggtatttgcattgcacatggtggaatgacagacgtaag-tgactgt-gatacagtagtatgtatcaaattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtaacttatcaggaaagatattattgaggaggaaata-ttta-actgggttttgacaattgagtaggagtttgcagagtggat----a---aaaaaagatgaaacattccaagaagatgaagcagTTTCAGCAAGCTTAGCAAATT-GTATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGCTTACTTTCTCTTTAATATTGGACAAG-ATTTT--------GTTTGTTC--GTTTTAGCTTTTTAATGCTTCTTTTGAGTATtctgctaaaagagta-ataagtatgtacactactttata-aggttgtaataaagagtgaa-aatgaaa-------aagatatttagcacaatgtctggtacatagtcaatacttcacaagtAATATACATACCCTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTATTTTAGTTGTTTAATGAACATAATTGTAATT------------CTTTTCATTTTTGCCAAATTCTGTTTCTTATGCA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-AAGTACCCAATAGAATGTCTTAGATGCATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48106129 900 - 81552678 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATACAT----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AAAGCCttcattcactcaacaaacatttattaccggtcttctctgtgctgagtatcatggtaacaaaaagaaacatcatagcccatgccttcagggtatttgcattgcatatgggggaatgaaagaagtaaa-tgtctat-gatacagtagaatgtatcaaattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtagcttatcaggaaagatattattgagtaggaaata-ttta-actgggttttgacacatgagtaggagcttgcagagtggac------------aagatgaaacattccaagaagttgaagcagTTTCAGCAAGCTTAGCAAATT-GCATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaatcttggacaagtatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagta-ataagaatgtacactactttata-aggttgtaataaagagtgaa-aatgaaataaatataagatatttagcacaatctctggtacatagtcaatacttcacaagtAATATACATACACTGAGGGTGTGTACAACTTATCCACATACTATACATTTTTATTTTAGTTCTTTAACGAACATAATTGTAATT------------CTTTTCATTTTT-CCAAATTCTGTTTCCTATGCA---TGTGTCTTATAAAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGAATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53214138 912 + 80904711 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTCTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCttcattcactcaataaacatttaccaccagtgttctctgtgctgagtatcatggtaacaaaaagaaatgtcataggccatgccttcagggtatttgcattgcatatgg-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggtgtagcttatcaggaaaaa-attattgaggaggaaata-tttt-aactggttttgacacatgagtaggagtttgcagaatgaac----a---aaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCTCTTTCTTGGCTACCCTAAGACATATTAGGcttactttctctttaatcttcgacacgttttttgtttgtttgtttgttt--gttttagctttttaatgcttcttttgcgtactctgctaaaagagta-ataagaatgtacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctggtacgtagtcaaaacttcacaagtaataTACATACCTTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTATTGTAGTTGTTTAATGAACATAATTGTGATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATACAAGTACCCGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTATAAACATTGTCTACATATAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52778641 913 + 80997621 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTCTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCttcattcactcaataaacatttaccaccagtgttctctgtgctgagtatcatggtaacaaaaagaaatgtcataggccatgccttcagggtatttgcattgcatatgg-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggtgtagcttatcaggaaaaa-attattgaggaggaaata-tttt-aactggttttgacacatgagtaggagtttgcagaatgaac----a---aaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCTCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTCGACACgttttttgtttgtttgtttgttt--gttttagctttttaatgcttcttttgcgtagtctgctaaaagagtgtataagaatgtacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctggtacatagtcaaaacttcacaagtAATATACATACCTTGAGGGTGTGTGGAACTTATCCACATACTATACATTTTTATTGTAGTTGTTTAATGAACATAATTGTGATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATACAAGTACCCGCAGGAAAAAGATGAGAGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTATAAACATTGTCTACATATAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47782208 917 + 74645514 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTTTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCTTcattcactcaataaacatttaccaCCAGTGTTCTCTGTGCTGAGTATCAtggtaaaaaaaagaaatgtcatagGCCATGCCTTCAGGGTATTTGCATTGCATATGG-GGAATGACAGAAGTAAA-TGACTAT-GATACAGTAGAATGTATCAAATTAT----------GAGCACAAGGGAGGAAATAATGATAAA---TGTATGGTGTAGCTTATCAGGAAAAATATTATTGAGGAGGAAATA-TTTT-AACTGGTTTTGACACATGAGTAGGAGTTTgcagaatgaacaaaaa---aaaaaaaatgaaacattccaAGAAGATGAAACAGTTTCAGCAAGTTTGgcaaatt-ttattctttaccGCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTGGACacgttttttgtttatttgtttgttt--gttttagctttttaatgcttcttttgCGTACTCTGCTAAAAGAGTA-ATAAGAATGTACACTACTTTATA-AGGTTGTATTAAagagtgaa-aatgaaataaatataagatgTTTAGCACAATGTCTGGTACATAGTCAAAACTTCACAAGTAATATACATACCTTGAGGGTGTATGGAACTTATCCACAtactatacatttttattgtagtTGTTTAATGAACATAATTgtaatt------------cctttcatttttgcCAAATTCTATTTCTTATACA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTCTAAACATTGTTTACATATAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10045608 916 - 75148670 ATCTCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTTTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCGttcattcactcaataaacatttaccaccagttttctctgtgctgagtatcatggtaacgaaaagaaacatcgtaggccatgccttcagggtatttgcattgcatatgc-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggggtagcttatcaggaaaactattattgaggaggaaata-tttt-aactggttttgacacatgagtaggagtttgcagaatgaac----acgcaaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCGCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTGGACAAgttttttgtttgttggtttgttt--gttttagctttttaatgcttcttttgcatactctgctaaaagagta-ataagaacatacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctgatacatagtcaaaacttcacaagtAATATACATACCTTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTGTTGTAGTTGCTTAATGAACATAATTGTAATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATCTAAGTACCTGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAAAGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112928376 857 + 159171411 ATCTCTTTGTTTG------------------------GAAATCAAAAGATA-TATACAT----TTTGAAAGGAC-CCTATATTCTTCTATGTCACCAA-AAAGCCTTCATTGACTCAACAAACA-TTAACACCAGTGTCCTCCATGCTGAGTATCATGGTAACAAGAATAAATGCCATAGCCCACGCC--------------------CATGGAGGAATGTCAGGAGTAAA-TGATTATAAATAGACTAGAATGTGTCAAATTAT----------GAGCACAAGACAGGAAATAATGATACA---TTAATGGGGTAGCTTAtcaggaaaggtattactgaggaggaaatatttta-accgggttttgaca--tgagtaggagtttgcagagtggac--------aaaaaagaagaaacattccaagaagatgaaacagtttcagcaagccttgTAAATT-TTATGCTCTACCCCTTTCTTAGCTACACTAAGACATATTAAGCTTACCTTCTTTTTAATCTTGGACACTTTTTTT-----------TGTTT--CTTTTAGCTTTTTAATGCTTCTTTTGAGTGTtctgctaaaagatta-ataagaatgtaccctaccttata-cagttgaattaaagagtgaa-aatgaaataaatataagatatttggcacaatacctggtacacagacaatacttcacaagtaataTACATACACTGAGGGTGTATGGAACTTATCCACATACTATAGATTTTGATTTTAGCTGTCTAAGAAAAATAATTGTAATT------------TTTTTCATTTTTGCCAAATTCTGTTTCCTATGCC---TTTATCTTATAGAAGTACTTGCAGGAAAATGATGAGGGTTTATCTGTTCTACACACA-GAGTGTCCATTAGAATATCTCAGATGAATATTATTG-------AAGGCTTAATACCTTTAAATATTGTTTACATGTAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 21602594 883 + 61074082 ATCACCATTGTCTGAATATTCTTTTTTCTTTTCTCCA----TCCATATATATTATCTATAGTATGATAAAGGGTGAGTAAATGCA-CTATGTTTTCAATAAATCCCAcattcatttaattaacattcattcagagtaat-----tgctaggcaccatgtttgtatatatgaataagacagtc--tggcctcatggagtatatagaaggactgg-aggaaaaaagatataagccaattat-gttagagtgtgataccttatatcacaggtatcttggagcaaaag---ggaaagaaagattcattttgaatggggtaga-tgtcaagaaagacattagaaatgagttgata-tccagactagacatttatatatgagcaagagttagttaaattgac--------aagggagaaagcacattaacacaa-atgaaacagtatgaggaaggacatggGATTATTACTCCTCATAAGTCT-TTGAATATTCTAGGAAAGA--------ACCATCTTCCTTATTGACTACATGATTtca--------atctatctaagcctcagttacctcatgt-----------------ctgaagaatta-agaaaaatcctgaccacctcttagaagcccctgtgaagtataaataaggtaacaattacagaagactcag-aaaattcctgacacacaacaggcac-tcaaaaatagta--------------attttTAGCATTATCTCATATTTCATA-------AGTGTATACATTTAA-ATACATAATTGTTATTTATCACACAATGTTCTACATGCTTTCCAAACCC--CTACATATGTGTTCTTTGTCTTATTGAAGTGCCTATAGGACACAAATTAAAGCTTAACTCCTTAGATCTCATTTATATCAAGCAAAATACCTCAAACATAACTTTTTGAGAGACAAAAGCTCAGAA--TATAAATATTCAACACACATAT i canFam3.chr9 I 71919 C 0 a score=16758.000000 s hg38.chr17_JH159146v1_alt 232935 5 + 278131 CAAAT s panTro4.chr17 66355456 5 - 82630442 CAAAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24879649 5 - 73212453 CAAAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107029 5 - 81552678 CAAAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215050 5 + 80904711 CAAAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52779554 5 + 80997621 CAAAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783125 5 + 74645514 CAAAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10046524 5 - 75148670 CAAAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46225391 5 - 159171411 CAAAT i calJac3.chr5 I 43331 C 0 s canFam3.chr9 21603477 5 + 61074082 TCAAT i canFam3.chr9 C 0 I 114 a score=27044.000000 s hg38.chr17_JH159146v1_alt 232940 9 + 278131 GCTTTTGTC s panTro4.chr17 66355461 9 - 82630442 GCTTTTGTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24879654 9 - 73212453 GCTTTTGTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107034 9 - 81552678 GCTTTTGTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215055 9 + 80904711 GCTTTTGTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52779559 9 + 80997621 GCTTTTGTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783130 9 + 74645514 GCTTTTGTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10046529 9 - 75148670 GCTTTTGTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46225396 9 - 159171411 ACTTTTGCA i calJac3.chr5 C 0 C 0 e canFam3.chr9 21603482 114 + 61074082 I a score=58020.000000 s hg38.chr17_JH159146v1_alt 232949 20 + 278131 AATG-AAAATCCATCATGCAG s panTro4.chr17 66355470 20 - 82630442 AATG-AAAATCCATCATGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24879663 21 - 73212453 AATGAAAAATCCATCATGCAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107043 21 - 81552678 AATGAAAAATCCATCATGCAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215064 21 + 80904711 AAATAGAAATTCATCATGCAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52779568 21 + 80997621 AAATAAAAATTCATCATGCAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783139 21 + 74645514 AAAGAAAAATTCATCATGCAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10046538 21 - 75148670 AATGAAAAATTCATCATGCAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46225405 21 - 159171411 AATGAAAAATCCATCATGCAA i calJac3.chr5 C 0 I 15797 s mm10.chr11 22453628 20 - 122082543 -AAAAAAAATCTACTGTGCAG i mm10.chr11 N 0 C 0 e canFam3.chr9 21603482 114 + 61074082 I a score=198697.000000 s hg38.chr17_JH159146v1_alt 232969 69 + 278131 TTTTGATGATC-AAAGG--------TAAATCAAAACTTCCTACTCCAAATGCCTATGCTGTAAGACATACAG--AAAAA-T s panTro4.chr17 66355490 69 - 82630442 TTTTGATGATC-AAAGG--------TAAATCAAAACTTCCTACTCCAAATACCTATACTGTAAGACATACAG--AAAAA-T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24879684 69 - 73212453 TTTTGATGATC-AAAGG--------TAAATCAAAACTTCCTACTCCAAATGCCTATACTGTGAGACATACAG--AAAAA-T i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107064 69 - 81552678 TTTTGATGATC-AAAGA--------TAAATCAAAACTTCCTACTCTTAATGCCTATACTGTAAGACATCCAG--AAAAA-T i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215085 64 + 80904711 TTTTGATGATC-AAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATATAC--AAAAA-T i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52779589 64 + 80997621 TTTTGATGATC-AAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATATAC--AAAAA-T i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783160 64 + 74645514 TTTTGATGATC-AAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATatac--aaaaa-t i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10046559 69 - 75148670 TTTTGATGATG-AAAGA--------TAAATCAAAACTTCCTACTTCTAGTGCCTATACTGTAAGACATACAG--AAAAA-T i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112929233 79 + 159171411 TTTTGATGATC-AAAGAAGTTTTGCTAAATCAAAACTTCCTACTCTTAATGCCTATACTGTAAGACATACAGAAAAAAA-T i calJac3.chr5 C 0 C 0 s mm10.chr11 22453648 70 - 122082543 -TTTCATGATTAAAAGA--------TGAATAAAATTTCCCCACTCTTAATCGTTCTTCAGAAAGACATACAA--AAAAACT i mm10.chr11 C 0 C 0 e canFam3.chr9 21603482 114 + 61074082 I a score=1369206.000000 s hg38.chr17_JH159146v1_alt 233038 437 + 278131 GTGTTTTTACTCATTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATGAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTATAGATGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTATTTGACAACAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAG-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG s panTro4.chr17 66355559 437 - 82630442 GTGTTTTTACTCATTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCACACATAGAATCAGAGCCATCTTCATTATAGATGGG---------ACATCCTTCTCACGA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTATTTGACAATAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAG-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24879753 437 - 73212453 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATGAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATGTCATCTGACCAGGACATTATTTGACAACAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGTAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------CGACCCCCACTA-AGGAAGAAATATGG--CAAGTGTTTCCAATAGAAACACAGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107133 437 - 81552678 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATGAGATCTGACACAGTGTTTATAACTTCCTTGGGATCT------------GAGCATCTCCCCAGCCATTCAAGAAGCACACATGGAATCAGAGTCATCTTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTCTTTGACAACAAAAGACACA-TTTACATTGTAAAAATTGT-CCCCCATG-ATTTGCTGAGAGTAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGGGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGCATTTCCAATAGAAACACAGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215149 437 + 80904711 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGGGATCT------------GACCATCTTCTCAACCGTTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTACAGGTGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAACTCCTTTCCGACATCTCATCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-GGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52779653 437 + 80997621 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATACCTTCCTTGGGATCT------------GACCGTCTCCTCAACCGTTCAAGAAGCACACACGGAATCAGAGTCATCTTCATTACAGGTGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCTAACTCCTTTCCGACATCTCATCTGACCAGGGCATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-GGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783224 437 + 74645514 gtgtttttactCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACTGAGTTTATAACTTCCTTGGGATCT------------GACCATCTCCTCAACCGTTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTACAGATGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCGAACTCCTTTCCGACATCTCATCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10046628 449 - 75148670 GTGTTTTTACTCCGTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGGGATCT------------GACCATCTCCTCAGCCATTCAAGAAGCATACACGGAATCAGAGTCATCTGCATTACAGATGGG---------ACATCTTTCTCCCAA-ATGAGTCCTTCCTTCTAACTCCTTTCCGAAATCTCACCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTGACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCAATCTACAGGTAGGAGGGAGAATCACGTTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGCGGTTTGTAAAAGATACTGCAT-AGACCAGGGACAAAGGTGTTTGTCCCTTTGTCCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGGAACACTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112929312 449 + 159171411 CTGCATTTACTCTTTAAAGTCAA-TGAGTCATAGC-TATGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGGGTTTAGAACTTCCCTGGGATGTGGTCATCTCCAAGACCATCTCCCAGATCATCCAAGAAGCACATATGGGATCAGAGTCATCCTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAATCCTTCCTTCTCATTCCTTTCCAACATTTCATCTGACCAGGATGTTCTTTGACAGCAAAAGATGTA-TTTACATTTTAAAAATTGC-CCCATATG-ATTTGCAGAGAGCAATCTACAGTTAAGAGGGAGAGTCACATAT-AAAA-ACAAAATATG--AGAGCCATGTGACCAGTGCTTTGTAAAATACACTGCATAAGGCTAAAGACAAAGG------------TGA-CCCCACTG-ACCAAGAAATATGA--TTCGTGTTTCCAATGGAAACACAGG i calJac3.chr5 C 0 C 0 s mm10.chr11 22453718 405 - 122082543 GAGTTTCTATTATTTCTAGGTAGTTGCACCACTGC-CAAGCTCTTCG-ACTTAAGAGACTGGAATGAGATCTGATA----ATTTAGAATGTTCTCAGG-TCT------------GCACATTTCCCAGATCCTCTAAT--GGACACACAAAATCACCATCATTCTCATGAAAGAT-GG---------ACAGTCTCCTTCTAA-ATG-GCCTTTCCTTCTAACTCCTTCT---AATCTCACCTGGGAGGAACACTCCTTGATAGCAAAAGGCATA-CTGGAATTTGTGGAAGAGCATTTCTATG-ATTTTCAAGGA---ATGTACGGATGGAAGGGAATGCCACGTTTAAAAA-ACAAAATGCCAGAGAGTCCTGTGACAAGTTACTTGTA---------GCAA-------------CAGG------------TGA--CCCACTATGGAAAAAAATGCGA--ACAGTGTTTCAGTTGCAAACACAGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21603596 426 + 61074082 GTTTTTTTACTGTGTAAAAGTAG-TGAATCATTACATTATAACTTTCAAATCGAATAGATTCAATAAGACAAAAGAGATAG---GTACTTTGCTAGGATTTT------------TTATACCTCACTGACCAT-CATAAAATCCAAA-GGAATCACAGTATTCCCCACTGAACATAAGTGATTGCCCGCCCCCGCCCCCCAAGATGGCTCTTTCACCCTATTTTCCTACCAGCCTTTCATATGACTTGTTAACCTCTTGGC--TAGAAGATTTAGTTGACAT---AAAATCCAT-TCTCAACATATTATCCTGGAGTTAAATACATAAATGAGGATTTAACACTTGT-AAAATCCAAAGAAAT--AATGTCATAGGA-GAGTGTACTTTGGAAGACACATCAG-A---CAAGGAAAAAAA----------------------TA-TGGAAGC----TGATTCACTTGGTTTTAACCAAATCAGATA i canFam3.chr9 I 114 T 11967 a score=75419.000000 s hg38.chr17_JH159146v1_alt 233475 39 + 278131 AGCACAGCAGGAAAAGG------------------------AAATGGGTTATTTTCTCTCTTT s panTro4.chr17 66355996 38 - 82630442 AGCACAGCAGGAAAAGG------------------------AAATGGGTTA-TTTCTCTCTTT i panTro4.chr17 C 0 I 23 s ponAbe2.chr17 24880190 39 - 73212453 AGCACAGCAGGAAAAGG------------------------AAATGGGTTATTTTCTCTCTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107570 39 - 81552678 AGCACAGCAGGAAAAGG------------------------AAATGGGTTATTTTCTCTCATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215586 55 + 80904711 AGCACAGCAGGAAAAGGAAATGGGTTATTTTTTGAATATTTAAATGGGTTAGTTT-------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780090 55 + 80997621 AGCACAGCAGGAAAAGGAAATGGGTTATTTTTTGAATATTTAAATGGGTTAGTTT-------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783661 55 + 74645514 AGCACAGCAGGAAAAGGAAATGGGTTATTTTTGGAGTATTTAAATGGGTTAGTTT-------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047077 31 - 75148670 AGCACAGCAGGAAAAGG------------------------AAACGGGTTAGTTT-------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112929761 39 + 159171411 AGCACAGCAGGAAAAGG------------------------AAATGTGTTATTTTTTCTTTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 22454123 38 - 122082543 AGC-CATCAGGAAAAAG------------------------AAATGTCATGTTTTCTTTCTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21592055 40 + 61074082 AACACTGCAGAAAAGGG-------TAAATTATGCTTTACTTAGATAT---------------- i canFam3.chr9 T 11967 C 0 a score=995528.000000 s hg38.chr17_JH159146v1_alt 233514 270 + 278131 TGGAGTATTTAAGTAGAAGCA-CACAATTATGTAATTACATGATTAAGTTTTCCACG-AGGTAAATAATAA---GGAAATAATGA-CGTGGTGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACCCAAGAACTTCACTCTCTTGAAAACCCACCCAGATC----------------CTCCCCGTTCTGACACCATGGTCAGCTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGT---CCTCTGTCAGGAGACCTGCTG------------------------------------------------------------ s panTro4.chr17 16240323 270 + 82630442 TGGAGTATTTAACTGGAA--A-CACAATTATGTAATTATATGATTAATTTTTCCAGT-AGGTAAATAATAACAAGGAAATAATGA-CATTGTGACAATGGGCCTTCAGGAGGGTATAAAGG-GACTACAGGCCCAGGAGACTTCCAAACACAAGAACTTCACTCTCCTAGAAACCCAACTAGATC----------------CTTCACCCTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTCACCAAGGCTGTGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------ i panTro4.chr17 n 23 C 0 s ponAbe2.chr17 24880229 270 - 73212453 TGGAGTATTTAACTAGAAACA-CACAATTATGTAATTACATGATTAAGTTTTCCACG-AGGTAAATAATAA---GGCAATAATGA-CGTGGTGGCAGTGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACCCAAGAACTTCACTCTCTTGGAAACCCACCCAGATC----------------CTCCCCTTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------ i ponAbe2.chr17 C 0 I 105 s nomLeu3.chr19 48107609 273 - 81552678 TGGAGTATTTAACTAGAAACA-CACAATTATGTAATTACATGATTAAGTTTTCCACG-TGGTAAATAATAACAAGGAAATAATGA-CGTGATGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACCTCCAAACCCAAGAACTTCACTCTCTTGGAAACCCACCCAGATC----------------CTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGA---CCTCTGTCAGGAGACTTGCTG------------------------------------------------------------ i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215641 273 + 80904711 TGGAGTATTTAACTAGAAACA-CACAATGATGTAATTACATGATTAAGTTTTCCACG-AGGTAAATAATAACAAGGAAATAATGA-CGTGGTGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATC----------------CTCCCCATTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------ i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780145 273 + 80997621 TGGAGTATTTAACTAGAAACA-CACAATGATGTAATTACATGATTAAGTTTTCCACG-AGGTAAATAATAACAAGGAAATAATGA-CGTGGTGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATC----------------CTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------ i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783716 273 + 74645514 TGGAGTATTTAACTAGAAACA-CACAATGATGTAATTACATGATTAAGTTTTCCACG-AGGTAAATAATAACAAGGAAATAATGA-CGTGGTGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATC----------------CTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCAGTGTGCTCTGACCAGGGCTGTGGCCAAGA---TCTCTGCCAGGAGACCTGCTG------------------------------------------------------------ i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047108 273 - 75148670 TGGAGTATTTAACTAGAAACA-CACAATGATGTAATTACATGATTAAATTTTCCACG-AGGTAAATAACAACAAGGAAATAATGA-CATGGTGGCAATGGGCCTTCAGCAGGGTATAAAGGAGGCTATAGACCCAGAAGACTTCCAAACACAGGAGCTTCAATCTCTTGGAAACTCACCCAGATC----------------CTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGTGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------ i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112929800 273 + 159171411 AGAAGTATTTAACTAGAAACA-CACAATTATGTAGTTACATGATTAAACTTTACAGC-AGGTAAATAATAACAAGAAAATAATGA-CGTGATGGCAATGGGCCTTCAGCAGGGTATAAAAGGGGCTATGGGCCCAGAAGATTTCCAAACCCAAGAACTTCACTCTCCTGGAAACCCACCAAGATC----------------CTCCAACTTCTGACACCATGGTCGACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGA---CCTCTGCCAGGAGACCTGCTG------------------------------------------------------------ i calJac3.chr5 C 0 I 75 s mm10.chr11 22454161 259 - 122082543 TGGAGTATTTAACTAGAAACATTACAATTATGTAATTAAATAATTAACTTTTCCAAGAAGGAAAATACTAACAAGGAAATAATGA-TGTAGTCATATGAGGTGTTCAGCGAGGTATAAAAGGGGGCGTGGGGCAAGGAGACTTCCAAACCCAACATCTTCACTCTCTCAGAAACCCACCCAGAAT----------------CTCCAC-CTCTGACACAATGGTCAACTCTTGTTGTGGCTCTGTCTGCTCTGAGGAGAGCTGTGGCCAAGG---CTGCTG--------------------------------------------------------------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21592095 345 + 61074082 TGGCATATTTAACCTGATAAA-CACGATTAT-TAGTAAC---ACTAATTGTTTCCTG-GTAGGAAAAACAACAAG--AATGTTGCTCATAGTAACATCAACTACTCAGCAGAGTATAAAAGGGGACAGAGG-TAAGGAAACATTCAAAGTCAAGAAA-CCACCCTAGTGGAAACCCACTCAAATCCACCTGTGGAACCCAACTCCTTTCACTGACACCATGGTCAACTCCTGTTGTGGCTCCGTCTGCTCTGACCAGAGCTGTGGCCAAGAGACCTGCTGCCGTCCCACATGCTGTGGTTCCAGCGGCTGTGGCTCCAGCTGCTGCAGGCCCAGCTGCTGCATCTCTAgctgctg i canFam3.chr9 C 0 C 0 a score=309769.000000 s hg38.chr17_JH159146v1_alt 233784 70 + 278131 CCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCACC------------------------------TGCTACCGCCCCAGCTGTTGTGTGTCCAGC s panTro4.chr17 16240593 70 + 82630442 CCACCCCAGCTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24880604 70 - 73212453 CCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCACC------------------------------TGCTACCGCCCCAGCTGTTGTGTGTCCAGC i ponAbe2.chr17 I 105 C 0 s nomLeu3.chr19 48107882 70 - 81552678 CCACCCCAACTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTATCCAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215914 70 + 80904711 CAGCCCAAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780418 70 + 80997621 CAGCCCAAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783989 70 + 74645514 CAGCCCCAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGTcccagctgctgtgtgtccagc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047381 70 - 75148670 CAGCCCCAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930148 100 + 159171411 ccgccccagctgctgtcggaccacctgctgcaggaccacctgctgccgccccagctgctgcatctccagttgctgccgccccagctgctgtgtgtccagc i calJac3.chr5 I 75 C 0 s mm10.chr11 22454420 70 - 122082543 CCAGCCCAGCTGCTGCCAGACCACCTGCTGTAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTGTCCAGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21592440 70 + 61074082 ccgcccctcctgctgccagaccacctgctgcaggaccacc------------------------------tgctgccgccccagctgctgtgtgtccagc i canFam3.chr9 C 0 C 0 a score=294589.000000 s hg38.chr17_JH159146v1_alt 233854 81 + 278131 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAAC---------------------------------------------CCACCTGCTGTCGCCCCAGCTGCTGTG---------------------------------------------AGACGACCTGCTGC s panTro4.chr17 16240663 171 + 82630442 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAACCCACCTACTGCAGCCCCAGCTGCTGTCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGCCCAGCTGCTTCAAGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24880674 81 - 73212453 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAAC---------------------------------------------CCACCTGCTGTCGCCCCAGGTGCTGTG---------------------------------------------AGATGACCTGCTGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107952 75 - 81552678 ---------------------------------------------TGCTGCAGGCCCCGGTGCTGCCAATCGGTATGCTGCCAAC---------------------------------------------CCACCTGCTGTCGCCCCAGCTGCTGTC---------------------------------------------AGACCACC------ i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215984 81 + 80904711 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGC---------------------------------------------CCACCTGCTGCCGCCCCAGCTGCTGTC---------------------------------------------AGACCACCTGCTGC i rheMac3.chr16 C 0 I 4 s macFas5.chr16 52780488 81 + 80997621 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGTCAGC---------------------------------------------CCAGCTGCTGCCGCCCCAGCTGCTGTC---------------------------------------------AGACCACCTGCTGC i macFas5.chr16 C 0 I 4 s papAnu2.chr16 47784059 81 + 74645514 ---------------------------------------------tgctgcaggccccagtgctgccagtctgtgtgctgccagc---------------------------------------------ccacctgctgccgccccagctgctGTC---------------------------------------------AGACCACCTGCTGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047451 81 - 75148670 ---------------------------------------------TGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAAC---------------------------------------------CCACCTGCTGCCGCCCCAGCTGCTGCC---------------------------------------------AGACCACCTGCTGC i chlSab2.chr16 C 0 I 4 s calJac3.chr5 112930248 81 + 159171411 ---------------------------------------------tgctgcAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGC---------------------------------------------CCACctgctgccgccccagctgctgtc---------------------------------------------ggaccacctgctgc i calJac3.chr5 C 0 I 15 s mm10.chr11 99785413 81 + 122082543 ---------------------------------------------TGCTGCAGACCCCAGTGTTGCCAGTCTGTGTGCTGCCAGC---------------------------------------------CCACctgctgccgccccagctgctgtc---------------------------------------------gccccagctgctgc i mm10.chr11 n 0 C 0 s canFam3.chr9 21592510 156 + 61074082 tgctgccgcccctcctgctctagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcc---------------cctcctgctgcCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGCTGCTGTG---------------------------------------------TGTCCAGCTGCTGC i canFam3.chr9 C 0 C 0 a score=553.000000 s hg38.chr17_JH159146v1_alt 233935 14 + 278131 ---------------CACCCTAGGTGCTG s panTro4.chr17 16240834 14 + 82630442 ---------------CGCCCCAGATGCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24880755 14 - 73212453 ---------------CGCCCTAGGTGCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108027 5 - 81552678 ------------------------TGTTG i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47784140 3 + 74645514 ---------------------AGG----- i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112930344 14 + 159171411 ---------------cgccccagctgctg i calJac3.chr5 I 15 C 0 s mm10.chr11 99785494 14 + 122082543 ---------------atttctagctgctg i mm10.chr11 C 0 I 4 s canFam3.chr9 21592666 29 + 61074082 CGCCCCTCCTGCTCTAGTTCCAgctgctg i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10047532 4 - 75148670 I e macFas5.chr16 52780569 4 + 80997621 I e rheMac3.chr16 53216065 4 + 80904711 I a score=268.000000 s hg38.chr17_JH159146v1_alt 233949 5 + 278131 CATCT s panTro4.chr17 16240848 5 + 82630442 CATCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24880769 5 - 73212453 CATCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108032 5 - 81552678 CAGGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27673953 5 - 80904711 catct i rheMac3.chr16 n 4 C 0 s macFas5.chr16 28201994 5 - 80997621 CATCT i macFas5.chr16 n 4 C 0 s papAnu2.chr16 47784143 1 + 74645514 ----A i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112930358 5 + 159171411 catct i calJac3.chr5 C 0 C 0 s mm10.chr11 99785512 1 + 122082543 c---- i mm10.chr11 I 4 C 0 s canFam3.chr9 21592695 5 + 61074082 tggct i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10047532 4 - 75148670 I a score=11981.000000 s hg38.chr17_JH159146v1_alt 233954 5 + 278131 CCAGC s panTro4.chr17 16240853 5 + 82630442 CCAGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24880774 5 - 73212453 CCAGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108037 5 - 81552678 CCACC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27673958 5 - 80904711 ccagc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 28201999 5 - 80997621 CCAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47784144 5 + 74645514 CCACC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047536 5 - 75148670 CCACC i chlSab2.chr16 I 4 C 0 s calJac3.chr5 112930363 5 + 159171411 ccagt i calJac3.chr5 C 0 C 0 s mm10.chr11 99785513 2 + 122082543 ct--- i mm10.chr11 C 0 n 0 s canFam3.chr9 21592700 5 + 61074082 ccagc i canFam3.chr9 C 0 C 0 a score=171453.000000 s hg38.chr17_JH159146v1_alt 233959 36 + 278131 TGCTGCCGCCCCAGCTGCTGTATGTCCAGCTGCTGC s panTro4.chr17 16240858 36 + 82630442 TGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24880779 36 - 73212453 TGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108042 36 - 81552678 TGCTACCGCCCCAGCTGTTGTGTGTCCAGCTGCTGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27673963 36 - 80904711 tgctgccgccccagctgctgTGTGTCCAGCTGCTGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 28202004 36 - 80997621 TGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47784149 36 + 74645514 TGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047541 36 - 75148670 TGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930368 36 + 159171411 tgctgccgccccagctgctgtgtgtccagctgctgc i calJac3.chr5 C 0 I 60 s mm10.chr11 22454490 36 - 122082543 TGCTGCAGGCCCAGCTGCTGTGTGTCTAGCTGCTGC i mm10.chr11 C 0 I 15 s canFam3.chr9 21592705 36 + 61074082 tgctgcaggcccagctgctgcatctctagctgctgc i canFam3.chr9 C 0 C 0 a score=145728.000000 s hg38.chr17_JH159146v1_alt 233995 38 + 278131 AAGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC s panTro4.chr17 16240894 38 + 82630442 AAGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24880815 38 - 73212453 AAGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC i ponAbe2.chr17 C 0 I 18358 s nomLeu3.chr19 48108078 38 - 81552678 AGGCCCCA----------------------------------------------------------------------GTACTGCCAGTCTGTGTGCTGCCAACCCAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27673999 38 - 80904711 AGACCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 28202040 38 - 80997621 AGACCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47784185 38 + 74645514 AGGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGtgctgtcagcccac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65062943 108 + 75148670 AGGCCCCAGTGCTGCCAGACCACCTGCTGCAGGACCACTTGCTGCCGTCCCAGCTGCTGTGTGTCCAGNNNNNNNNNNGTGCTGCCAGTCTGTGTGCTGCCAGCCCAC i chlSab2.chr16 n 0 C 0 s calJac3.chr5 112930464 38 + 159171411 AGGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC i calJac3.chr5 I 60 I 45 s mm10.chr11 22454541 38 - 122082543 AGGCCCCA----------------------------------------------------------------------GTGCTGCCAGTCTGTGTGCTGCCAGCCCAC i mm10.chr11 I 15 C 0 s canFam3.chr9 21592741 38 + 61074082 -cgcccca---------------------------------------------------------------------cctgctgccagaccacctgctgcaggaccac i canFam3.chr9 C 0 C 0 a score=60596.000000 s hg38.chr17_JH159146v1_alt 234033 21 + 278131 CTGCTGCCACCCCAGCTGCTG s panTro4.chr17 16240932 21 + 82630442 ctgctgccgccctagctgctg i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48108116 21 - 81552678 CTGCTGTCGCCCCAGCTGCTG i nomLeu3.chr19 C 0 I 60 s rheMac3.chr16 27674037 21 - 80904711 CTGCTGCAGGACCACTtgctg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 28202078 7 - 80997621 CTGCTGC-------------- i macFas5.chr16 C 0 I 3 s papAnu2.chr16 47784223 21 + 74645514 ctgctgccgccccagctgctg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65063051 21 + 75148670 CTGCTGCCGCCCCAGCTGCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930547 21 + 159171411 ctgctgccgccccagctgctg i calJac3.chr5 I 45 C 0 s mm10.chr11 22454579 21 - 122082543 CTGCTGCCGCCCCAGTTGCTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21592779 21 + 61074082 ctgctgccgccccagctgctg i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24880853 18358 - 73212453 I a score=3321.000000 s hg38.chr17_JH159146v1_alt 234054 1 + 278131 C s panTro4.chr17 16240953 1 + 82630442 c i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899211 1 - 73212453 c i ponAbe2.chr17 I 18358 C 0 s nomLeu3.chr19 48108197 1 - 81552678 C i nomLeu3.chr19 I 60 C 0 s rheMac3.chr16 27674058 1 - 80904711 c i rheMac3.chr16 C 0 I 14574 s papAnu2.chr16 47784244 1 + 74645514 c i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65063072 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930568 1 + 159171411 c i calJac3.chr5 C 0 C 0 s mm10.chr11 22454600 1 - 122082543 C i mm10.chr11 C 0 C 0 s canFam3.chr9 21592800 1 + 61074082 t i canFam3.chr9 C 0 C 0 e macFas5.chr16 28202085 3 - 80997621 I a score=6033.000000 s hg38.chr17_JH159146v1_alt 234055 4 + 278131 ATCT s panTro4.chr17 16240954 4 + 82630442 atct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899212 4 - 73212453 atct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108198 4 - 81552678 ATCT i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 28202088 1 - 80997621 A--- i macFas5.chr16 I 3 I 5878 s papAnu2.chr16 47784245 4 + 74645514 atct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65063073 4 + 75148670 ATCT i chlSab2.chr16 C 0 I 38076 s calJac3.chr5 112930569 4 + 159171411 atct i calJac3.chr5 C 0 C 0 s mm10.chr11 22454601 4 - 122082543 ATTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21592801 4 + 61074082 gtgt i canFam3.chr9 C 0 C 0 e rheMac3.chr16 27674059 14574 - 80904711 I a score=40308.000000 s hg38.chr17_JH159146v1_alt 234059 11 + 278131 CCAGCTGCTGT s panTro4.chr17 16240958 11 + 82630442 ccagctgctgt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899216 11 - 73212453 ccagctgctgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108202 11 - 81552678 CCAGCTGCTGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216069 11 + 80904711 CCACctgctgc i rheMac3.chr16 I 4 C 0 s macFas5.chr16 52780573 11 + 80997621 CCACCTGCTGC i macFas5.chr16 I 4 C 0 s papAnu2.chr16 47784249 11 + 74645514 ccagctgctgc i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112930573 11 + 159171411 ccagttgctgc i calJac3.chr5 C 0 C 0 s mm10.chr11 22454605 11 - 122082543 CCAGCTGCTGT i mm10.chr11 C 0 I 15 s canFam3.chr9 21592805 11 + 61074082 ccagctgctgc i canFam3.chr9 C 0 C 0 e chlSab2.chr16 65063077 38076 + 75148670 I a score=466646.000000 s hg38.chr17_JH159146v1_alt 234070 140 + 278131 CGCC---------------CCAGCTGCTGTGTGTCCAGGTGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCA------------------------------ACCTGCTGCCGTCCCAGCTGCTGCATCTCCAGCTGCTGCCGCCCCTCTTGCTGTGAATCCAGCTGCTGCCGCCC s panTro4.chr17 16240969 127 + 82630442 cgcc---------------ccagctgctgtgtgtccagctgctgcagaccccagtgctgccagtctgtgtgctgccagccc------------------------------acctgctgccaccccagctgcagcatctccagctgctgccgcccctcttgctgtgaatcca------------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899227 140 - 73212453 cgcc---------------ccagctgctgtgtgtccagctgctgcagaccccagtgctgccagtctgtgtgctgccagccc------------------------------acctgctgccgccccagctgcagcatctccagctgctgccacccctcttgctgtgaatccagctgctgccgccc i ponAbe2.chr17 C 0 T 18514 s nomLeu3.chr19 48108213 127 - 81552678 CGCC---------------CCAGCTGCTGTGTGTCCAGCTGCTGCAAGCCTCAGTGCTGCCAGTCTGTGTGCTGCCAGCCC------------------------------ATCTGCTGCCGCCCCAGCTGCTGCATCTCCAGCTGCTGCCGCCCCTCTTGCTGTGAATCCA------------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216080 127 + 80904711 cgcc---------------ccagctgctgtgtgtccagctgctgcaggccccagtgctgccagtctgtgtgctgccagccc------------------------------acctgctgccgccccagctgctgcatctccagctgctgccgcccctcttgctgtgaatcca------------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780584 127 + 80997621 CGCC---------------CCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCC------------------------------ACCTGCTGCCGCCCCAGCTGCTGCATCTCCAGCTGCTGCCGCCCCTCTTGCTGTGAATCCA------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47784260 127 + 74645514 cgcc---------------ccagctgctgtgtgtccagctgctgcaggccccagtgctgccagtctgtgtgctgccagccc------------------------------acctgctgccgccccagctgctgcATCTCCAgctgctgccgcccctcttgctgtgaatcca------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047577 127 - 75148670 CGCC---------------CCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAGTGCTCCCAGTCTGTGTGCTGCCAGCCC------------------------------ACCTGCTGCCGCCCCAGCTGCTGCATCTCCAGCTGCTGCCGCCCCTCTTGCTGTGAATCCA------------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930584 112 + 159171411 cgcc---------------ccagctgctgtgtgtccagctgctgcaggccccagtgctgctagtctgtgtgctgagagccc------------------------------atctgctgctgcc---------------ccagctgctaccgcccctcttgctctgaatcca------------- i calJac3.chr5 C 0 C 0 s mm10.chr11 22454631 107 - 122082543 AGCT---------------CCAGCTGCTGTGGTTCTAgctgctgccgcccctgctgccgcc------cctgctgc-agccc--------------------------------ttgctgcagcccctgctgccgccc------ctgctgccgtccctgctgccg----ccc-------------- i mm10.chr11 I 15 C 0 s canFam3.chr9 21592816 185 + 61074082 cgcccctcctgctccagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctccagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctgtggctccagctcctgtggctc i canFam3.chr9 C 0 C 0 a score=2817.000000 s hg38.chr17_JH159146v1_alt 234210 3 + 278131 ATG s panTro4.chr17 16241096 1 + 82630442 --g i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48108340 1 - 81552678 --G i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216207 1 + 80904711 --g i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780711 1 + 80997621 --G i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47784387 1 + 74645514 --g i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047704 1 - 75148670 --G i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930696 1 + 159171411 --g i calJac3.chr5 C 0 C 0 s mm10.chr11 22454738 3 - 122082543 ctg i mm10.chr11 C 0 C 0 s canFam3.chr9 21593001 3 + 61074082 tag i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24899367 18514 - 73212453 T a score=702488.000000 s hg38.chr17_JH159146v1_alt 234213 165 + 278131 ------------CTGCTGCCGCCCCTGCTGCTGCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGTCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-G-GCTCACGTCCCCC-TTCACCACT s panTro4.chr17 16241097 165 + 82630442 ------------ctgctgccgcccctgctgctgCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCATGTGCTGCGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-G-GCTCATCTCTCCC-TTCACTGCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24880853 165 - 73212453 ------------CTGCTGCCGCCCCTGCTGCTGCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCAGCTGCCCCCGCCCCATGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-G-GCTCACGTCCCCC-TTCACCACT i ponAbe2.chr17 T 18514 C 0 s nomLeu3.chr19 48108341 165 - 81552678 ------------CTGCTGCCACCCCTGCTGCTGCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-G-ACTCATCTCCCCC-TTCACTACT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216208 165 + 80904711 ------------ctgctgccgcccctgctgctgcCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCGCC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-G-CTTCACCTCCCCC-TTCACTGCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780712 165 + 80997621 ------------CTGCTGCCGCCCCTGCTGCTGCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCGCC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-G-CTTCACCTCCCCC-TTCACTGCT i macFas5.chr16 C 0 I 1 s papAnu2.chr16 47784388 165 + 74645514 ------------ctgctgccgcccctgctgctgcctgcGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTgcccccgccccttgtgctgcgcc---tcctcttgctgctgagccccc-tgccct-g-gctcacctccccc-tTCACTGCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047705 165 - 75148670 ------------CTGCTGCCGCCCCTGCTGCTGCCTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCACC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-G-GCTAACCTCCCCC-TTCACCGCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930697 166 + 159171411 ------------ttgctgctgcccctgctgccgcCTGCGTCCAGTCTGTGGCCAAGTCTCCTGCCACACCACTTGCTATCGTCAAATCTGTGTTATCTCCACCTGCCCCCACCCCATGTGCTGTGCC---TCCTCTTGCTGCTGAGCCTGCTTGCTCT-G-GCTCACCTCTCCC-TTCACTGCT i calJac3.chr5 C 0 C 0 s mm10.chr11 22454741 154 - 122082543 ---------------ttgccgcccctgttgctgTCTGAGACCAGTCTGTGGTCAGGTCTGCTGCCAAACCACTTGCTACCGCCCCACCTGTGTCATCTCCACCTGCCCCCGCCCCATGTGCTGTGCCACACCCTGCTGCTGCTGAGATCCC-TAATCTAG-GCACATCTCC------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21593004 179 + 61074082 ctgctgccgcccctcctgctgcccctcctgctgccTGCGCCCAGTCTGTGGCCGGGTCTCCTGCCACACTACCTGCTATCGCCCCACCTGTGTCATCTCCACCTGCCCCCGTCCCATGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-GTGACCACCACCTCTGTTTACCTCT i canFam3.chr9 C 0 C 0 a score=3600.000000 s hg38.chr17_JH159146v1_alt 234378 1 + 278131 G s panTro4.chr17 16241262 1 + 82630442 G i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24881018 1 - 73212453 G i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108506 1 - 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216373 1 + 80904711 G i rheMac3.chr16 C 0 C 0 s papAnu2.chr16 47784553 1 + 74645514 G i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047870 1 - 75148670 G i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930863 1 + 159171411 G i calJac3.chr5 C 0 C 0 s canFam3.chr9 21593183 1 + 61074082 G i canFam3.chr9 C 0 C 0 e mm10.chr11 22454895 0 - 122082543 C e macFas5.chr16 52780877 1 + 80997621 I a score=434776.000000 s hg38.chr17_JH159146v1_alt 234379 124 + 278131 GCCCACAGATGTAGACCCTTCTACTGTGCTGACCATTAGGATACATGAAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTTATGCTTCCAAAGAGCCCACCACCATTTCACTGACTCTGTGAG s panTro4.chr17 16241263 122 + 82630442 GCCCACAGTTGTAGACCATTCTTCTGTGCTGAATATTAGGACACATGGAGTGGGATTGAT-GTCATTCAGCAGGTTGGATTTCATGTTTCCAATGAGCCCATCACCATCCCGCTGA--CTGTGAG i panTro4.chr17 C 0 I 20157 s ponAbe2.chr17 24881019 124 - 73212453 GCCCACAGATGTATACCATTCTACTGTGCTGACCATTAGGACACATGGAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTCATGCTTCCAATGAGCCCATCACCATTTCACTGACTCTTTGAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108507 124 - 81552678 GCCCACAGATGTAGACCCTTCTACTTTGCTGACTATTAGGACACATGGAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTCATGTTTGCAATGAGCCCATCACCATTTCACTGACTCTTTGAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216374 122 + 80904711 GCCCACAGATGCAGACCCTTCTACTATGCTGGCTATTAGGACACATGGAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780878 122 + 80997621 GCCCACAGATGCAGACCCTTCTACTATGCTGGCTATTAGGACACATGGAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAG i macFas5.chr16 I 1 C 0 s papAnu2.chr16 47784554 122 + 74645514 GCCCACAGATACAGACCCTTCTACTGTGCTGGCTATGAGGACACATGGAGTGGGGTTGAT-GTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047871 124 - 75148670 GCCCACAGATGCAGACCCTTCTACTGTGCTGGCTATTAGGACACATGGAGTGGGGTTGAT-GTCATTCAGTAGGATGGACCTCATGTTTCCAATGAGCCCATCACTATTTCACTGACTCTGTGAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930864 124 + 159171411 GCCCACAGATGTAGACCCTTGTACTGTGCTAACCATTAGGACACATGGAGTGGGATTGAT-GTCATTCAATAGGATGGACTTCATGTTTCCAATGAGCCCATTACAATTTCACTGATTCCGTGAG i calJac3.chr5 C 0 C 0 s mm10.chr11 22454895 122 - 122082543 ACGTACAGATATGTACCATTCTTGCATGTGAACCCGTAGGACACGTGGAATCTGTTTGGC-ATCATTTAGCAGGATGGACCACACAATTCTTGTGAG-CCACCATC-TTCCGCAGAATCAGTCAA i mm10.chr11 C 0 C 0 s canFam3.chr9 21593184 124 + 61074082 CCCCACAGACATAGACTCTTTT-TGGTGCTCACCATTAGGACACATGAAGTGGGGTTAGTAATGCTCCACTGAGTTGGGTCTCACGATTCCAACGAGCCCATCACTGTCCCACTGACTCTGTAAG i canFam3.chr9 C 0 C 0 a score=1122449.000000 s hg38.chr17_JH159146v1_alt 234503 357 + 278131 AACATTCTGG-TT-CATTTTAAACTCCCTCCC-TTGCTTTCTTTTT-CTTCTGGTGGTGGCACCAAATGTGAATTAATTTGTAATACACTAGCTAAGAAATTATTCCAATCTTCTGATTTCCTTATTTTCTTTATCACTTTAAGGT-ACAGATTC-TCCTTCTCAGTGAGGTAGATATTATCTGCAGGACCAGTTTTGTCACTGATG-TTGCACCCTCAGATCCAGCCACCCA----ATTGTATTCTGTG---TTTCTCCTAGGGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACTTAAGAATTCATTG-----GTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTC s panTro4.chr17 66356057 360 - 82630442 AACATTCTGG-TTTCATTTTAAACTCCCTCCCCTTGCTTTCTTTTTTCTTCCGGTGGTGGCACCAAATGTGAATTAATTTGTAATACACTAGCTAAGAAATTATTCCAATCTTCTGATTTCCTTATTTTCTTTATCAGTTTAAGGT-ACAGATTC-TCCTTCTCAGTGAGGTAGATATTATCTGCAGGACCAGTTTTGTCACTGATG-TTGCACCCTCAGATCCAGCCACCCA----ATTATATTCTGTG---TTTCTCCTAGGGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACTTAAGAATTCATTG-----GTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTC i panTro4.chr17 I 23 C 0 s ponAbe2.chr17 24881143 357 - 73212453 AACATTCTGG-TT-CATTTTAAACTCCCTCCC-TTGCTTTCTTTTT-CTTCCGGTGGTGGCACCAAATGTGAATTAATTTGTAATCCACTAGCTAAGACATTATTCCAATCTTCTGATTTCCTTATTTTCTTTATCACTTTGAGGT-ACAGATTC-TCCTTCTCAGTGAGGTAGACATTATCTGCAGGACCAGTTTTGTCACTGAGG-TTGCACCCTCAGATCCAGCCACCCA----GTTATATTCTGTG---TTTCTCCTAGCGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACATAAGAATTCATTG-----GTTTCATTCTCTATTGCTTTCATAATTATTTTCCTGATTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108631 354 - 81552678 AACATTCTGG-TT-CATTTTAAACTCCCTC---TTGCTTTCTTTTT-CTTCCAGTGGTGGCACCAAATGTGAATTAATTTGTAATCCACTAGCTAATAAATTATTCCAATCCTCTAATTTCCTCATTTTCTTTATCACTTTGAGGT-ACCTATTC-TTCTTCTCAGTGAGGTAGACATTATCTGCAGGACCAGTTTTGTCACTGAGG-TTGCACCCTCAGATCCAGCCACCCA----GTTATATTCTGTG----TTCTGCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACGTAAGAATTCATTG-----GTATCATTCTCTGTTGCTTTCATAATTATTTTACTGATTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216496 357 + 80904711 AATATTCTGG-TT-CATTTTAAGCTCCCTCCC-TTGCTTTCTTTTT-CTTCCAGTGGTAGCACCAAATAGAAATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATTTTCTTTATCACTTTGAGGT-AGAGATTC-TCCTTCTCAGTGAGGTAGACGTTATCTGCAGGATCAGTTTTGTCACTGATG-TTGCACCCTCAGACCCAGGGGCCCA----GTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTAGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACGTAAGAATTCATTG-----GTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781000 357 + 80997621 AATATTCTGG-TT-CATTTTAAGCTCCCTCCC-TTGCTTTCTTTTT-CTTCCAGTGGTAGCACCAAATAGAAATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATTTTCTTTATCACTTTGAGGT-AGAGATTC-TCCTTCTCAGTGAGGTAGACATTATCTGCAGGATCAGTTTTGTCACTGATG-TTGCACCCTCAGACCCAGGGGCCCA----GTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTAGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACGTAAGAATTCATTG-----GTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47784676 357 + 74645514 AATATTCTGG-TT-CATTTTAAGCTCCctccc-ttgctttcttttt-cttccagtggTAGCaccaaatagaaattaatttgtaATCCACTAACTAAGAAATTATTCCGATCCtctaatttccttattttctttatcactttgAGGT-AGAGATTC-TCCTTCTCAGTGAGGTAGACATTATCTGCAGGATCAGTTTTGTCACTGATG-TTGCACCCTCAGACCCAGGGGCCCA----GTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACATAAGAATTCATTG-----GTATCATTCTCTATtgctttcataattattttactgATTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047995 357 - 75148670 AATATTCTGG-TT-CATTTTAAGCTCCCTCCC-TTGCTTTCTTTTT-CTTCCAGTGGTAGCACAAAATAGGAATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATTTTCTTTACCACTTTGAGGT-AGAGATTC-TCCTTCTCAGTGAGGTAGACATTATCTGCAGGACCGGTTTTGTCACTGATG-TTGCACCCTCAGACCCAGGGGCCCA----GTTATATTCTGTG---TTTCTCCTGGCATGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACATAAGAATTCATCG-----GTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930988 354 + 159171411 AACATTCTAA-TT-CATTTTAAACTCCCTCCC-TTGCTTTCTTTTA-TTTCCAGTGGTGGCAACAAGTATAAATTAA-TTGTAATCCACTAGCTATGAAATTATTCCAATCCTCTAAATTCCTCATATTCTTTATCACTTTGAGGCAATAGATTC-TCCTTCTCAGTGAGGTAGACATTAAATTCCGGACCAGTATTGCCACTGATG-TTATGCCCCCAGAACCAGCCATCCA----GTTATAT--TGTT---TTCCTCTGAGTGTGACTTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAA------ACTTTTCTGCACATAAGAATTCATTG-----GTATCATCCTCTATTGCTTTCAT-ATCATTTTACTGATTC i calJac3.chr5 C 0 C 0 s mm10.chr11 22455017 347 - 122082543 CACCTCCTGG-CT-CACATTACATTCTCTTGT-TTGCTACCATGTC-TTTCTAATGTTTGCACTGTGCTGAAATTAATCTCTAAGTTGTGAGCTAAGAATTCATCCTAGTTCTCCAAAT---GGATTGACTTTGTAGCTCTAAATT-A--------TTCTTCCCAGTAAATAAGACACTTTCTACAGCCTTTGTCTTAGCATTGACT-TTACAACCCCAGACCTGAGGGGCTG----GGTCTATTCTGTATGTTTTCCCCTAAAATGAATTTCTTTTATTCTGTTGTTTCTATTCTTTCTAATAA------ACTTTCTTACATATAAGAATTCATTG-----GT---ACTGTCTGTGTCTTCCATAACCATTGCACTCAATC i mm10.chr11 C 0 I 829 s canFam3.chr9 21593308 336 + 61074082 CATATTCTGGCCT-CAGTCCAAATTCTACTTC-TGG--ATCTTTCC-CTTTCATT--------CAAGTATGAATTTCCTTACAATATACCAACTGTTGTATTGACTAATTCTTCCTAAATTCTCA-----------ACTGTGGGGC-ACCAACTCATCAAGTTCAAGGAGCTAAAGTTTAATTTCAGTATTT-CTACATTACAGATATTTATAGCCTCTCTCTTAATTGTCCAATGGATTCTTTTTTATA---ATTCTTATTCTCCAAA----TTGTCCTATGTTATAACTCTATGTCAAAATAAACCACCACTTTCCTGTA--TGAAAATTCAGTGTGACAGTACTCTTCTTTAAGATTTTCAATACAGT----------- i canFam3.chr9 C 0 C 0 a score=62646.000000 s hg38.chr17_JH159146v1_alt 234860 19 + 278131 CCT-GGCAATTATATTTTAC s panTro4.chr17 66356417 19 - 82630442 CCT-GGCAATTATATTTTAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24881500 19 - 73212453 CCT-GGCAATTATATTTTAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108985 19 - 81552678 CCT-GGCAATTATATTTTAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216853 19 + 80904711 CCT-AGCAATTATATTTTAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781357 19 + 80997621 CCT-AGCAATTATATTTTAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785033 19 + 74645514 CCT-AGCAATTATATTTTAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048352 19 - 75148670 CCT-AGCAATTATATTTTAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112931342 20 + 159171411 CCTAGGCTGTTATACTTCAC i calJac3.chr5 C 0 C 0 s canFam3.chr9 21593644 19 + 61074082 CTG-GACAACTATATTTTAC i canFam3.chr9 C 0 I 11762 e mm10.chr11 22455364 829 - 122082543 I a score=69713.000000 s hg38.chr17_JH159146v1_alt 234879 29 + 278131 ACAAAGACACAG-------------------GAGGAGCAA--------------------------------------------------------------------CCCGTGTT s panTro4.chr17 66356436 29 - 82630442 ACAAAGACACAG-------------------GAGGAGCAA--------------------------------------------------------------------CCCGTGTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24881519 29 - 73212453 ACAAAGACACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCGTGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109004 29 - 81552678 AGAAAGACACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCATGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216872 29 + 80904711 ACAAAGATACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCATGTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781376 29 + 80997621 ACAAAGATACAG-------------------GAAGAGCAA--------------------------------------------------------------------TCCATGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785052 29 + 74645514 ACAAAGATACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCATGTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048371 29 - 75148670 ACAAAGATACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCATGTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112931362 29 + 159171411 ACAAAGACACAG-------------------GAAGAGCAA--------------------------------------------------------------------CCCATGTT i calJac3.chr5 C 0 C 0 s canFam3.chr9 21605425 116 + 61074082 ATGATGATACAACTCATGTTGAAACCACTTCAAggggcacctgggtggctcagtgattgagcatctacctttggctcaagtcgtgatcccaggatcctgggatcgagtcccgcatt i canFam3.chr9 I 11762 I 107 e mm10.chr11 22455364 829 - 122082543 I a score=455509.000000 s hg38.chr17_JH159146v1_alt 234908 141 + 278131 GAAATCATTTTGAAGATACATTCTATATCAAATATAGATAATTTAAGGTATTGGAATAAAAgtgctgtgtgtatatgtgtgtg------------tatgtgCACATGTGTCTTAATATTCTAAATTAAGACA--TTTAATTCATG-CCTTAGCTCT s panTro4.chr17 66356465 143 - 82630442 GAAATCATTTTGAAGATACATTCTATATCAAATATAGATAATTTAAGGTATTGGAATAAAAGTGCTGTGTGTATATGTGTGTG------------TATGTGCACATGTGTCTTAATATTCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24881548 141 - 73212453 GAAATCATTTTGAAGATACATGCTATATCAAATATAGATAATTTAAGGTATTGGAATAAAAATGCTGTGTGTTTATGTGTGTG--------------TGTGCACATGTGTCTTAATATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109033 155 - 81552678 GAAATCACTTTGAAGATACATGCTATATTGAATATAGATAATTTAAGGTATTGGAATAGAAgtgttgtgtgtatatgtgtgtgcgtgtgtgtgtatgtgtgCACATGTGTCTTAATATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216901 155 + 80904711 GAAATCACTTTGAAGATACATGCTATATAAAATATACATAATTTAAGGTATTGGAATAAAAGTGCtgtgtgtatatgtgtatgtgtgtgtttgtgggtgtgCACAGGTGTTTTAATATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781405 155 + 80997621 GAAATCACTTTGAAGATACATGCTATATAAAATATACATAATTTAAGGTATTGGAATAAAAgtgctgtgtgtatatgtgtatgtgtgtgtttgtgggtgtgCACAGGTGTTTTAATATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785081 155 + 74645514 GAAATCACTTTGAAGATACATGCTGTAtcaaatatacataatttaagGTATTGGAATAAAAGtgctgtgtgtatatgtgtatgtgtgtgtttgtgggtgcgCACAGGTGTTTTAATATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048400 153 - 75148670 GAAATCACTTTGAAGATACATGCTATATCAAATATACATAATTTAAGGTATTGGAATAAAAgtgctgtttgtatatgtg--tgtgtgtgtttgtgggtgtgCACAGGTGTTTTAAGATCCTAAATTAAGACAGATTTAATTCATG-CCTTAGCTCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112931391 138 + 159171411 GAAATCACTTTGAAGATATATGCCATATCACATAAAGATAATTTAAGGCAATGGAATAAAAGTGGTGTGTGTGTGTGAGTGCA----------------CATACATGT-TCTTAATGTCCTAAATTAGGAAAGATTTAATTCATG-CCTTGGCTCT i calJac3.chr5 C 0 C 0 s canFam3.chr9 21605648 143 + 61074082 GAAATCACTTCGAGACTAAGTGCTTTATCAAATATAGATAATTTAGGATATTGGAACA-AAGCAGCACATGTATATGTGTATG------------TGTACATGCATATGTCTTAATATCCTAAACTGGGACAGACTTAATTCATGTCTTTAGCTCT i canFam3.chr9 I 107 T 3367 e mm10.chr11 22455364 829 - 122082543 I a score=263742.000000 s hg38.chr17_JH159146v1_alt 235049 95 + 278131 TGAAACACATTTTATCATGAACACATTATATCTCA---CAATACTATTGTCCCTATTTTGAC-AAAAAACATAAAACCAAATTTCAGAAAAGTAGACAC s panTro4.chr17 66356608 95 - 82630442 TGAAACACATTTTATCATGAACACATTATATCTCA---CAATACTATTGTCCCTATTTTGAC-AAAAAACATAAAACCAAATTTCAGAAAAGTAGACAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24881689 95 - 73212453 TGAAACACATTTTATCATGAACACCTTATATCTCA---CAATACTATTGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTGAAAAGTAGACAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109188 95 - 81552678 TGGAACACATTTTATCTTTAACACATTATATCTCA---TAATACTATCGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTGAAAATTAGACAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217056 99 + 80904711 TGAAACACATTTTATCTTTAACACGTTATATCTAATTGTCATACTATTGTCCCTATTTTGACAAAAAAAGATAAAACCAAATTTCTGAAAAGTAGACAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781560 99 + 80997621 TGAAACACATTTTATCTTTAACACGTTATATCTAATTGTCATACTATTGTCCCTATTTTGACAAAAAAAGATAAAACCAAATTTCTGAAAAGTAGACAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785236 99 + 74645514 TGAAACACATTTTATCTTTAACACATTATATCTAATTGTCATACTATTGTCCCTATTTtgacaaaaaaagataaaaccaaatTTCTGAAAAGTAGACAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048553 98 - 75148670 TGAAACACATTTTATCTTTAACACATTATATCTAATTGTCATACTATTGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTGGAAAGTAGACAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112931529 95 + 159171411 TGAAACACATTTTATCTTTAACATATTACATCTCA---TAATACTGTTGTCCCTATTTTGAC-AAAAAGGATTAAACCAAATTTCTGAAAAGTGGACAT i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22455364 829 - 122082543 I a score=82320.000000 s hg38.chr17_JH159146v1_alt 235144 25 + 278131 CAATGAAATAAGGGAAATCTTCTAT s panTro4.chr17 66356703 25 - 82630442 CAATGAAATAAGGGAAATCTTCTAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24881784 25 - 73212453 CAATGAAAGAAGGGAAATCTTCTAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109283 25 - 81552678 CAATGAAAGAAGGGAAATCTTCTAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217155 25 + 80904711 CAATGAAAGAAGGGAAATCTTCTAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781659 25 + 80997621 CAATGAAAGAAGGGAAATCTTCTAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785335 25 + 74645514 CAACGAAAGAAGGGAAATCTTCTAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048651 25 - 75148670 CAATGAAAGAAGGGAAATCTTCTAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112931624 25 + 159171411 CAATGAAAGAAGGGAAATCTTCTAT i calJac3.chr5 C 0 I 4360 s mm10.chr11 22456193 22 - 122082543 caaTTAATTAATAGA---CTAATAT i mm10.chr11 I 829 C 0 e canFam3.chr9 21605791 3367 + 61074082 T a score=764655.000000 s hg38.chr17_JH159146v1_alt 235169 252 + 278131 AAAGAATTTAATGTACTCGAGTCATTTCACTCAATAAA-CAACATTTTGGAATTTATAACCAAAAAGCGGGCTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATGTTGAGCTGTATT----------------TTATCTGGATAGCATGGTATA------TTTCTGACAGTGGTCTCTATGGGTTTACGTTATAATTTAAACATCTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGCTGAAAATTTCAAGGCTCACTTTTC s panTro4.chr17 66356728 252 - 82630442 AAAGAATTTAATGTACTCGAGTCATTTCACTCAGTAAA-CAACATTTTGGAATTTATAACCAAAAAGCGGGCTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATGTTGAGCTGTATT----------------TTATCTGGATAGCATGGTATA------TTTCTGACAGTGGTCTCTATGGGTTTACGTTATAATTTAAACATCTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGCTGAAAATTTCAAGGCTCACTTTTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24881809 251 - 73212453 AAA-AATTTAATGTACTCAAGTCATTTCACTCAATAAA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTAAGTTCTGCTGA----------TAAAAAAAAAGCATATTGAGCTGTATT----------------TTATCTGGATAGCATAGTATA------TTTCTG-CAGTGGTCTCTATGGGTTTACGTTATAATTTAAACATCTCTACACTTAACATTTTAATATATGTAAACCCAGCAAGGCTGAAAATTTCAAGACTCACTTTTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109308 252 - 81552678 AAAGAATTTCATGTACTGAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTGAGTTCCGCTGA-----------GACAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATAGTATA------TTGCTGAGTGTGGTCTCTGCGGGTTTACATTATAATTTAAACAACTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGCTGAAAATTTCAAGGCTCACTTTTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217180 258 + 80904711 AAAGAATTTAATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATTATTAAAAAGTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGAAATGATATCTATTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGAAAGGCTGAAAATTTCAAGACTCACTTTTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781684 258 + 80997621 AAAGAATTTAATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATTATTAAAAAGTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGAAATGATATCTATTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGCAAGGCTGAAAATTTCAAGACTCACTTTTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785360 252 + 74645514 AAAGAATTTAATGTACTCAATTCATTTCACTCAATAAA-CAACATTTtggaatttattattaaaaagtggaCTTTATTTCCCAGTGAGTTCTGCtga-----------gaaaaaaaagcatattgAGCTGTATT----------------TCATCTGGATAGCATGGTATA------CTTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTaacatttaaacatatataaaccCAGCAAGGCTGAAAATTTCAAGActcacttttg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048676 252 - 75148670 AAAGAATTTAATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATGATTAAAAACTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGGTATA------CTTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGCAAGGCTGAAAATTTCAAGACTCACTTTTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112936009 263 + 159171411 aaagaaTTTAATGTACTCAATTCCTTTCACTCAATACA-TAACATTTGGGAATTTATAATCAAAAAGTGGTTTTTATTTCTAAGTGAGTTTTTCTCATATTTGCATATGAGAAAAATGCATATTGAGCTGTATT----------------TTGTCTGGATAGTGTGGTGTA------TTTCTGCCTGTGGACTCTAAGGGTTTACCTTACTATTCAAACATCTCCACACATAACATTTTAATATATATAAGCCCAGCAAGGCTGAAAATTTCAAGGCTCACTTTTC i calJac3.chr5 I 4360 C 0 s mm10.chr11 22456215 260 - 122082543 ----AAAACAATGTCCTCAACTTATTTCAATTAAAGAATCAGCATGTGAAAATTTATAATCACAAAGTGACTTGTATTACTCATGGAATTGCACTCT-----------GA-AGAAATGCGTATTTTGTTGTGTTTTCAAGGGCCTGTGACTCATCTGGATAGTGTGGAATG------TTTCAGAACGTGGTCTTTTGGAGTCT---TTGTACCTCAAGCATTTCCATTCTTAATATTTTATCAGAAACATACCT-TCAAGACTGGAATTCTTAAGCTCCTTTTCTC i mm10.chr11 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T a score=28516.000000 s hg38.chr17_JH159146v1_alt 235421 10 + 278131 TTTTTAAGAA s panTro4.chr17 66356980 10 - 82630442 TTTTTAAGAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24882060 10 - 73212453 TTTTTAAGAA i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53217438 10 + 80904711 TTTTTAAGAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781942 10 + 80997621 TTTTTAAGAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785612 10 + 74645514 tttttaagaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048928 10 - 75148670 TTTTGAAGAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112936272 10 + 159171411 TTCTTAAGAA i calJac3.chr5 C 0 C 0 s mm10.chr11 22456475 10 - 122082543 TTTTTGAGGA i mm10.chr11 C 0 T 2857 e canFam3.chr9 21605791 3367 + 61074082 T e nomLeu3.chr19 48109560 0 - 81552678 C a score=5841.000000 s hg38.chr17_JH159146v1_alt 235431 3 + 278131 TTA s panTro4.chr17 66356990 3 - 82630442 TTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24882070 3 - 73212453 TTA i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53217448 3 + 80904711 TCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781952 3 + 80997621 TCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785622 3 + 74645514 tta i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048938 3 - 75148670 TCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112936282 3 + 159171411 TTA i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e nomLeu3.chr19 48109560 0 - 81552678 C a score=5460.000000 s hg38.chr17_JH159146v1_alt 235434 4 + 278131 tttt s panTro4.chr17 66356993 4 - 82630442 tttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24882073 4 - 73212453 TTTT i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52781955 4 + 80997621 TTTT i macFas5.chr16 C 0 I 1 s papAnu2.chr16 47785625 4 + 74645514 tttt i papAnu2.chr16 C 0 I 2 s calJac3.chr5 112936285 4 + 159171411 TTTT i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e chlSab2.chr16 10048941 0 - 75148670 C e rheMac3.chr16 53217451 0 + 80904711 C e nomLeu3.chr19 48109560 0 - 81552678 C a score=-1080.000000 s hg38.chr17_JH159146v1_alt 235438 1 + 278131 -c s panTro4.chr17 66356997 1 - 82630442 -c i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24882077 1 - 73212453 -C i ponAbe2.chr17 C 0 C 0 s calJac3.chr5 112936289 1 + 159171411 A- i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e chlSab2.chr16 10048941 0 - 75148670 C e papAnu2.chr16 47785629 2 + 74645514 I e macFas5.chr16 52781959 1 + 80997621 I e rheMac3.chr16 53217451 0 + 80904711 C e nomLeu3.chr19 48109560 0 - 81552678 C a score=846.000000 s hg38.chr17_JH159146v1_alt 235439 3 + 278131 ttg s panTro4.chr17 66356998 3 - 82630442 ttg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24882078 3 - 73212453 ttg i ponAbe2.chr17 C 0 I 18529 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936290 0 + 159171411 C e chlSab2.chr16 10048941 0 - 75148670 C e papAnu2.chr16 47785629 2 + 74645514 I e macFas5.chr16 52781959 1 + 80997621 I e rheMac3.chr16 53217451 0 + 80904711 C e nomLeu3.chr19 48109560 0 - 81552678 C a score=119770.000000 s hg38.chr17_JH159146v1_alt 235442 1317 + 278131 tagatttgtttgagttcattgtagattctcaatattagccctttgtcagatgagtagattgcaaaaattttctcccattctgtaggttgcttgttcaccctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccatgcccatgcctatgtcctgaatggtattgcctaggttttattctagggtttttaaggttttaggtctaatatgtaagtctttaatccatcctgaattaatttttgtataaagtgtaaggaagggatccagtttcagctttctacatatgactagccagttttcacagcaccatttattaaataggggatcctttctccatttcttgtttttgtcaggtttgtcaaagaccaaaaaacaaacagccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaaagacatatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagctcaaccattgtggaagacagtgtggcgattcctcagggatcttgaactagaaataccatttgacccagcaatccattactgggtatatacccaaaggattataaaccatgctgctgtaaagacacatgcacatgtatgtttattgcggcactattcacaatagcaaagacttggaaccaagccaaatgtccaacaatcatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccatataaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaagaacaaaaaaccaaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaagggaaacatcacacaccggggcctgttgtgggggtggggggaggggg-aaggataccattaggagatatacctaatgttaaatgacaagttgatgggtgcagcacaccaacatggcacatgtatatgtgtaactaacctgcatgttgtgcacatgtaccctaaaacttaaagtatcataaaaataaataaaTAAATAAATAAATTGAGAAAAAA s panTro4.chr17 66357001 1310 - 82630442 tagatttgtttgagttcattgtagattctcgatattagccctttgtcagatgagtagattgcaaaaattttctcccattctgtaggttgcctgttcaccctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtccatgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaatatgtaagtctttaatccatcctgaattaatttttgtataaagtgtaaggaagggatccagtttcagctttctacatatgactagccagttttcacagcaccatttattaaataggggatcctttctccatttcttgtttttgtcaggtttgtcaaagaccaaaaaacaaacagccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaaagacacatgacaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaagggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagacagtgtggcgattcctcagggatcttgaactagaaataccatttgacccagcaatccattactgggtatatacccaaaggattataaaccatgctgctgtaaagacacatgcacatgtatgtttattgcagcactattcacaatagcaaagacttggaaccaagccaaatgtccaacaatcatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccatataaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaccaaacacggcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaagggaaacatcacacaccggggcctgttgtgggggtagggggaggggggaaggataccattaggagatatacctaatgttaaatgacaagttgatgggtgcagcacaccaacatggcacatgtatatatgtaactaacctgcatgttgtgcacatgtaccctaaaacttgaagtataatataaataaaTAAATAAATA--------GAGAAGAAA i panTro4.chr17 C 0 C 0 e ponAbe2.chr17 24882081 18529 - 73212453 I e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936290 0 + 159171411 C e chlSab2.chr16 10048941 0 - 75148670 C e papAnu2.chr16 47785629 2 + 74645514 I e macFas5.chr16 52781959 1 + 80997621 I e rheMac3.chr16 53217451 0 + 80904711 C e nomLeu3.chr19 48109560 0 - 81552678 C a score=1078.000000 s hg38.chr17_JH159146v1_alt 236759 7 + 278131 AAGAATT- s panTro4.chr17 66358311 7 - 82630442 AAGAATT- i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48109560 8 - 81552678 AAGAATTA i nomLeu3.chr19 C 0 C 0 e ponAbe2.chr17 24882081 18529 - 73212453 I e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936290 0 + 159171411 C e chlSab2.chr16 10048941 0 - 75148670 C e papAnu2.chr16 47785629 2 + 74645514 I e macFas5.chr16 52781959 1 + 80997621 I e rheMac3.chr16 53217451 0 + 80904711 C a score=905.000000 s hg38.chr17_JH159146v1_alt 236766 5 + 278131 TTTTT s panTro4.chr17 66358318 5 - 82630442 TTTTT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48109568 5 - 81552678 TTTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217451 4 + 80904711 TTTT- i rheMac3.chr16 C 0 I 1 s chlSab2.chr16 10048941 4 - 75148670 TTTT- i chlSab2.chr16 C 0 I 1 e ponAbe2.chr17 24882081 18529 - 73212453 I e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936290 0 + 159171411 C e papAnu2.chr16 47785629 2 + 74645514 I e macFas5.chr16 52781959 1 + 80997621 I a score=1911.000000 s hg38.chr17_JH159146v1_alt 236771 1 + 278131 T s panTro4.chr17 66358323 1 - 82630442 T i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48109573 1 - 81552678 T i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217456 1 + 80904711 T i rheMac3.chr16 I 1 C 0 s macFas5.chr16 52781960 1 + 80997621 T i macFas5.chr16 I 1 C 0 s chlSab2.chr16 10048946 1 - 75148670 T i chlSab2.chr16 I 1 C 0 s calJac3.chr5 112936290 1 + 159171411 T i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24882081 18529 - 73212453 I e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e papAnu2.chr16 47785629 2 + 74645514 I a score=41476.000000 s hg38.chr17_JH159146v1_alt 236772 17 + 278131 TGAAATTAGTTCATAGC s panTro4.chr17 66358324 17 - 82630442 TAAAATTAGTTCATAGC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48109574 17 - 81552678 TGGAATTAGTTCACAGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217457 17 + 80904711 TGGAATTAGTTCATAGC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781961 17 + 80997621 TGGAATTAGTTCATAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785631 17 + 74645514 tggaATTAGTTCATAGC i papAnu2.chr16 I 2 C 0 s chlSab2.chr16 10048947 17 - 75148670 TGGAATTAGTTCATAGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112936291 17 + 159171411 TGGAATTAGTTCATAGC i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24882081 18529 - 73212453 I e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T a score=561673.000000 s hg38.chr17_JH159146v1_alt 236789 194 + 278131 CTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATCTCCAAGAGTAGTGCCTTCATTTGAATCTGAAAGAATATGGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTACTTGACAATTATCAGCTCTGAAGT-GCCC--TAAGCTATTGAGCCAATCAAGTTTA s panTro4.chr17 66358341 194 - 82630442 CTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATCTCCAAGAGTAGTGCCTTCATTTGAATCTGAAGGAATATGGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTACTTGACAATTATCAGCTCTGAAGT-GCCC--TAAGGTATTGAGCCAATCAAGTTTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900610 195 - 73212453 CTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATCTCCAAGAGAGGTGCCTTCATTTGAATCTGAAAGAATATAGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAATGGCCT--TAAGCTATTGAGCCAATCAAGTTTA i ponAbe2.chr17 I 18529 C 0 s nomLeu3.chr19 48109591 195 - 81552678 CTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATGTCCAACAGAGGTGCCTTCATTTGAATCTGAAAGAATATGGCAAATGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGAATATTACCAGCTCTGAAGTGGCCC--TAAGCTATTGAGCCAATCAAGTTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217474 197 + 80904711 TTTGAGCAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTGTAGTAGGAGAACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781978 197 + 80997621 TTTGAGCAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTGTAGTAGGAGAACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785648 197 + 74645514 TTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAGTTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTtgatgtttttacttttatttgactATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048964 195 - 75148670 TTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATGTCGTAAGTGATTATAACTTGGCATTCTAGTGGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCC--TAAGCTATTGAGCCAATCAAGTTTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112936308 193 + 159171411 TTTGAGTAGTTCTCAGCTGGGG-GCATATTCTAATTGGAATCTCCAAGAGTGGTTCCTTCATTTGAATCTAAAAGAGTACCAT-AGTGATTATAACATGGCATTCTAGTGGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGCCTTTGATCAGCTCTGAAGTTACCC--TAAGTTATTGAACCAAtcaaattta i calJac3.chr5 C 0 I 5130 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T a score=125734.000000 s hg38.chr17_JH159146v1_alt 236983 56 + 278131 AGATGATTTGTTCAGATATCATTGATAAGCTTCACATTTTTTCAGATGCCTTAAGA s panTro4.chr17 66358535 56 - 82630442 AGATGATTTGTTCAGATATCATTGATAAGCTTCACATTTTTTCAGATGCCTTAAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900805 56 - 73212453 AGATGATTTGTTCAGGTATCATTGATAAGCTTCATATTTTTTCAGATGCCTTAAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109786 56 - 81552678 AGATGATTTCTTCAGATATCATTGATAAGCTTCACATTTTTTCAGATGCTTTAAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217671 55 + 80904711 AGATGATTTGTTCAGATATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52782175 55 + 80997621 AGATGATTTGTTCAGATATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785845 55 + 74645514 AGATGATTTGTTCAGATATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAGA i papAnu2.chr16 C 0 I 1140 s chlSab2.chr16 10049159 56 - 75148670 AGATGATTTGTTCAGATATCATTGATAAGATTCACATTTTTTCTGATGTCTTAAGA i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I a score=639584.000000 s hg38.chr17_JH159146v1_alt 237039 273 + 278131 AAATTGTTGCCCAGGTCTTAATCATAGAGTTATGATGCCTCCTTAAACATGAGGCAGGATAAATAAGGTTAGAAGGCtgtgaaagtaaaataaatattggggcccccaaatcactaagctaaagggaaaaggcaaactcggaactgcttaggacaaacttgcctctcattctattcaaagtcacccctctgctcaccgagataaatgcatatctgattgactccttgggaaagactaatcagaaactcaaaagaatgcaaccatttgtctctt s panTro4.chr17 66358591 273 - 82630442 AAATTGTTGCCCAGATCTTAATCATAGAGTTATGATGCCTTCTTAAACATGAGGCAGGATAAATAAGGTTAGAAGGCtgtgaaagtaaaataaatattgaggcccccaaatcactaagctaaagggaaaaggcaaactcagaactgcttagggaaaatctgcctctcattctattcaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaagactaatcagaaactcaaaagaatgcaaccatttgtctctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900861 273 - 73212453 AAAATGTTGCCCAGATCTTAATCATAGAGTTATGATGCCTTCTTAAACATGAGGCAGGATAAATAAGGTTAGGAGGCtgtgaaaggaaaataaatattggggcccccaaatcactaagctaaagggaaaaggcaaacggggaaccgcttaggacaaacctgcctctcattctattcaaagtcacccctctgctcactaagataaatgcatatctgattgcctccttgggaaaggctaatcagaaactcaaaagaaagcaagcatttgtctctt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109842 273 - 81552678 AAAATGTTGCTCAGATCTTAATCATAGAGTTATGATGCCTTCTTAAACATGAGGGAGGATAAATAAGGTTAGAAGGCtgtgaaaggaaaataaatattggggaccccaaatcactaagctatagggaaaaggcaaactgggaactgcttaggacaaacctgcctctcattctattcaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttggaaaaggctaatcagaaactcaaaagaaagcaactatttgtctctt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217726 272 + 80904711 -AAATGTTGCCCAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGAAGCtgtgaaaggaaaataaatatcgggtcccccaaatcactaagctaaagggaaaaggcaagctgggaactatttcgggcacacctgcctctcattctacttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaagactaaccagaaactcaaaagaatgcaagtatttgtctctt i rheMac3.chr16 C 0 I 1538 s macFas5.chr16 52782230 272 + 80997621 -AAATGTTGCCCAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGAAGCtgtgaaaggaaaataaatatcggggcccccaaatcactaagctaaagggaaaaggcaagctgggaactatttcgggcacacctgcctctcattctacttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaagactaaccagaaactcaaaagaatgcaagtatttgtctctt i macFas5.chr16 C 0 I 1726 s papAnu2.chr16 47787040 273 + 74645514 aaaatgttgcccAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGaagctgtgaaaggaaaataaatatcggggcccccaaatcactaagctaaagggaaaaggcAAGCTGGGAACTATTTCGGGCACACCTGCCTCTCATTCTACttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttggGAAAGACTaaccagaaactcaaaagaatgcaagtatttgtctctt i papAnu2.chr16 I 1140 I 1730 s chlSab2.chr16 10049215 271 - 75148670 -AAATGTTGCCCAGATGTTAATCACAGAGTTATGACACCTTCTTAAACATGAGGCAGGATAAATAAAGTTAGGAAGCtgtgaaaggaaaagaaatattgggg-ccccaaatcactaagctaaagggaaaaggcaagctgggaactgcttagggcaaacctgcctctcattctgttcaaagtcacccctctgctcactgagataaatgcatacctgattgcctccttgggaaaggctaatctgaaactcaaaagaatgcaagcatttgtctctt i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I a score=1820.000000 s hg38.chr17_JH159146v1_alt 237312 2 + 278131 at s panTro4.chr17 66358864 2 - 82630442 at i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24901134 2 - 73212453 at i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48110115 2 - 81552678 at i nomLeu3.chr19 C 0 C 0 s chlSab2.chr16 10049486 2 - 75148670 at i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e papAnu2.chr16 47787313 1730 + 74645514 I e macFas5.chr16 52782502 1726 + 80997621 I e rheMac3.chr16 53217998 1538 + 80904711 I a score=3689.000000 s hg38.chr17_JH159146v1_alt 237314 8 + 278131 ataccta-t s panTro4.chr17 66358866 8 - 82630442 ataccta-t i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24901136 8 - 73212453 ataccta-t i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48110117 8 - 81552678 ataccta-t i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52784228 7 + 80997621 attccta-- i macFas5.chr16 I 1726 C 0 s papAnu2.chr16 47789043 7 + 74645514 attccta-- i papAnu2.chr16 I 1730 C 0 s chlSab2.chr16 10049488 8 - 75148670 gtacctat- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e rheMac3.chr16 53217998 1538 + 80904711 I a score=2155316.000000 s hg38.chr17_JH159146v1_alt 237322 1018 + 278131 gatctggaagccccctcccagctttgagttgtcccggctttgcttcgagttgtcctgccttttctgaaccaaatctgtgtttatcttacatatgttgattgatgcctcatatctcccgaaaatgtataaaacaaaagtgttatctgaccaccttacacacatgttgtcaggacttcctgaagctgtgtcactggagcagcctgaagctgtgtcactgaagcatcctcaaccttggcaaaataaactttctaaattaactgaagcctgtctcagatattcagcgttcacaTTTTTGTAATTCTgaagggattctgagtggagatgcacctgacctttgacaaatatccagttggtacctggtaatagcatgagctaaccttatggctcaaaccaagaggacaatttactgagttctggaagcaccctccccaaagaatccatgatctcccaaaatttggtgaagatctaaagtgtattttgctgtacaacttccccatctattttttttttttttttggagttttactggcttacttgcc---------------------------------ttcctttacaaggaaggcaagattta-ttttacttcctttacaaggaaggcaagatttcctgcttccatgatgatgaaacgcatgtagagtttgagctcactcccagcagggaacaccagtttgagtt-tttttcctgcttccaggatggtagaaagcagctttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaaccagatggtcttaatttctccttatcattagaatgcttggtaatcGTTTTGTTGGA-C-Attttgttgtttgttttggtctttctccc-atcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattatgggtaacaaagcctct---------------------ttaatttggctaaaattcattgcagctgcaaaaGAAGA----AAACAAACAAAAAGAACCAAAAATCCGTGCACTTGGTTTCTGTGTTTGCTTCCT s panTro4.chr17 66358874 1013 - 82630442 gatctggaagccccctcccagctttgagttgtcccgcttttgcttcgagttgtcctgccttttctgaaccaaatccgtgtttatcttacatatgttgattgatgtctcatatctccctaaaatgtataaaacaaaagtgttatctgaccaccttacacacatgttgtcaggacttcctgaagctgtgtcactggagcagcctgaagctgtgtcac-gaagcatcctcaaccttggcaaaataaactttctaaattaantgaagcctgtctcagatattcagggttcacaTTTtggtaattctgaagggattctgagtggagatgcacctgacctttgacaaatatccagttggtacctggtaatagcatgagctaaccttatggctcaaaccaagaggacaatttactgagttctggaagcaccctccccaaagaatctatgatctcccaaaatttggtgaagatctaaagtgtattttgctgtacaacctccccatctatttttttttttg----ggagttttactggcttacttgcc---------------------------------ttcctttacaaggaaggcaagattta-ttttacttcctttacaaggaaggcaagatttcctgcttccatggtgatgaaatgcatgtagagtttgagctcactcccagcagggaacaccagtttgagtt-tttttcctgcttccaggatggtagaaagcagccttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaaccagctggtcttaatttctccttatcattagaatgcttggtaatcatattgttgga-c-attttgttgtttgttttggtctttctccc-atcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattatgggtaacaaagcctct---------------------ttaatttggctaaaattcattgcagctgcaaaaGAAGA----AAACAAACAAAAAGAACCAAAAATCCATGCACTTGGTTTCTGTGTTTGCTTCCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24901144 1015 - 73212453 gatctggaagccccctcccagcttcgagttgtcccgcctttgcttcgagttgtcttgccttttctggaccaaatccgtgttcatcttacatatgttgattggtgtctcatgtctccctaaaatgtataaaacaaaagtgttatctgaccaccttatacacatgtcatcaggacttcctgaggctatgtcact------------------------ggagcatcctgaaccttggcaaaataaactttctcaattaactgagacctgtctcagattttctgggttATCATTTtggtaattgtgaaaggattctgagtggagatgcacctgacctttgacaaatatcctgttggtgcctggtaatagcatgagctaactttatggctcaaaccaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctcccaaaatttggtgaagaactaaagttcattttgttgtacaactgccccacctttttttgttttt-----ggagttttacttgcttacttgcc----------------------------------tcccttataaggaaggcaagatttacttttacttcctttacaaggaaggcgagatttcctgcttccatgatgatgaaaggcatgtagagtttgaggtcactcccagcagggaagaccagtttgagtt-ttcttcctgcttctagggtggtagaaagcagccttcagcctgagacccatccctaggtaagtagctgaactggggctttgtctgggctaaagtttaacaacaagctggtcttaatttctccttatcattagagtgcttggtgatcctattgttggagt-tttttgttgtttgttttggtctttctccc-atcagacttgaccaaccctacctgacttggtcaAATCCaagtgagaattcaaaattatgggtaacaaaacctctctaatttggctctaatttagcctaatttggctaaaattccttgcagctgcaaaagaagaaaacaAACAAACAAAAAGAATAAAAAACCCATGCACTTGGTTTCTGTGTTTGCTTCCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48110125 991 - 81552678 gatctggaagccgcctccgagctttgagttgtcccgcctttccttcgagttgtcttgccttttctggaccaaatctgtgttcatcttacatacgttgattgatgtctcatgtctccctaaaatgtataaaacaaaagtgtgatctgacctccttacacacatgtcgtcaggacttcctgaggctgtgttact------------------------ggagtatcctcaaccttggcaaaataaactttctcagttaactgagatctgtctcagattttcaaggttaacaTTTtggtaattgtgaagggattccaagtggagatgcccctgacctttgacaaatatcctgttggtgactgggaatagcatgagctaactttatggctcaaaccaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactgccccacctatttttgttttt-----ggagttttacttgcttacttgcc----------------------------------ttccttatgaggaaggcaagatttacttttacttcctttacaaggaaggcaatatttcctgcttccatgatgatgaaaggcatgtagagtttgagctcacccccagcagggaagaccagtttgagtt-tttttcctgcttctaggatggtagaaggcagccttcagcctgagagccatccctaggtaagtagctgaactggggctttgtctgggCTAAAGTTTAACAGACAGATGGTCTTATTTTCTCCTTATCATTAGAGTGCTTGGTGATCCTATTGTTGGAAT-tttttgttgtttgttttggtctttctcccaatcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattaagtgtaacaaagcctgt---------------------ctaatttggctaaaattccttgcagctgcaaaaGAAGA----AAACAAACAAAAAGAATCAAAAAACCATGCACTTTGTTTCTGTGTTTGCTTCCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53219536 1022 + 80904711 gatctagaagcccacttccagcttcaagttgtcctgcctttgctttgagttgtcccgccttttctggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaaactgtgaactgaccaccttacacacatgttgtcaggacttcctgaggcagtatcact------------------------ggagcgtcctcaacctcggcaaaataaactttctaaattaactgagacctgtcccagtttttcagggttcaca-TTtggtaatcatgaagggattctgagtggatatgcccctgacctttgataaatatcctgttggtgcctggtaatagcatgagctaactttatgattcaaaccaataggacaatttgctgaggtctgggagcacccaccgcaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactcccccacctatttttgttttt-----ggagttttatttgcttacttgccatcctgtacaaggaaggcaagattagcttttacttcctttataaggaaggcaagatttacttttacttcctttacaaagaaggcaagatttcctgcttccatgatgatgaaaggcatgtagcgtttgagctcactcccagcagggaagaccagttttagtg-cttttcctgcttctacggtggtagaaagcagtcttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaacctgctggtcttaatttctccttatcattagagtgcttgatgatcctattgctgga-t-tttttgttggttgtttTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTAcctgacttggtcaaatccaagtgagaattcaaaattattggtaacaaagcctct---------------------ctaatttggccaaaattccttgcagctgcgaaaGAAGA----AAACAAACAAAAAGAACCAAAAAAACATGCACTTGGTTTCTGTGTTTGCTTCCT i rheMac3.chr16 I 1538 C 0 s macFas5.chr16 52784235 1022 + 80997621 gatctagaagcccacttccagcttcaagttgtcctgcctttgctttgagttgtcccgccttttctggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaaactgtgaactgaccaccttacacacatgttgtcaggacttcctgaggcagtatcact------------------------ggagcgtcctcaacctcggcaaaataaactttctaaattaactgagacctgtcccagtttttcagggttcaca-TTtggtaatcatgaagggattctgagtggatatgcccctgacctttgataaatatcctgttggtgcctggtaatagcatgagctaactttatgattcaaaccaataggacaatttgctgaggtctgggagcacccaccgcaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactcccccacctatttttgttttt-----ggagttttacttgcttacttgccatcctgtacaaggaaggcaagattagcttttacttcctttataaggaaggcaagatttacttttacttcctttacaaagaaggcaagatttcctgcttccatgatgatgaaaggcatgtagcgtttgagctcactcccagcagggaagaccagttttagtg-cttttcctgcttctacggtggtagaaagcagtcttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaacctgctggtcttaatttctccttatcattagagtgcttggtgatcctatTGCTGGA-T-TTTTTGTTGGTTGTTTTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTAcctgacttggtcaaatccaagtgagaattcaaaattatgggtaacaaagcctct---------------------ctaatttggccaaaattccttgcagctgcgaaaGAAGA----AAACAAACAAAAAGAACCAAAAAAACATGCACTTGGTTTCTGTGTTTGCTTCCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47789050 1022 + 74645514 gatctAGAAGCCCACTTCcagcttcaagttgtcctgcctttgctttgagttgtcccgccttttcTGGACCAAATccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaAACTGTGAACTGACCACCTTACacacatgttgtcaggacttcctgaggcagTATCACT------------------------GGAGCGTCCTCAACctcggcaaaataaactttctaaattaactgagacctgtcccAGTTTTTCAGGGTTCACA-TTTGGTAATCATGAAGGGATTCTGAGTGGATATGCCCCTGACCTTTGATAAATATCCTGTTGGTGCCTGGTAATAGCATGCGCTAACTTTATGAttcaaaccaataggacaatttgctgaggtctgGGAGCACCCACCGCAAAGAATCcctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactccCCCACCTATTTTCGttttt-----ggagttttacttgcttACTTGCCATCCTGTACAAGGAAGGCAAGATTAGCTTTTACTTCCTTTATAAGGAAGGCAAGATTTACTTTTACTTCCTTTACAAAGAAGGCAAGATTTCCTGCTTCCATGATGATGAAAGGCATGTAGCGTTTGAGCTCACTCCCAGCAGGGAAGACCAGTTTTAGTG-CTTTTCCTGCTTCTACGGTGGTAGAAAGCAGtcttcagcctgagacccatCCCTAGGTAAGTAGCTGAACTGGGGCTTTGTCTTGGCTAAAGTTTAACAACCTgctggtcttaatttctccttatcATTAGAGTGCTTGGTGATCCTATTGCTGGA-T-TTTTTGTTGGTTGTTTTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTACCTGACTTGGTCAAATCCAAGTGAGAATTCAAAATTATGGGTAACAAAGCCTCT---------------------CTAATTTGGCCAAAATTCCTTGCAGCTgcgaaagaaga----aaacaaacaaaaagaaccaaaaaaacaTGCACTTGGTTTCTGTGTTTActtcct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10049496 902 - 75148670 gatctggaagccc-ctcccagtttcaaggtgtcctgcctttgcttcgagttgtcccgccttttgcggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtgtgaaacaaaactgtgatctgaccaccttacacacatgtcgtcaggacttcctgaggctgtgtcaca------------------------ggagcgtcctcaacctggggaaaataaactttctaaattaactgggacctgtctcaggttttcagggttcacaTTTtggtaatcatgaagggattctgagtggagatgctcctgacctttgacaaatatcctgttggtgcctagtaagagcatgagctaacttcatggcttaaaccaataggacaatttgctgaggtctgggagcaccctccccagagaatccctgatcttccaaaatttggtaaagatctaaagttcattttgctgtacaactcccccacctatttttgttttt-----agagttttacttgctt---------------------------------------------------------------------------------------------------------------------aaggcatgtagcgtttgagctcactcccagcagtgaagaccagtttgagtattttttcctccttctaggatagtagaaagcagccttcagcctgaaacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaaccagctggtcttaatttctccttatcattagagtgcttggtgatcctatTGTTGGA-GATTTTTGTTGTTTGTTTT-CTCTTTCTCCC-ATCAGACTTGACCAACTGTACATgacttggtcaaatcctagagagaattcaaaattatgggtaacaaaacctct---------------------ctaatttggctaaaattccttgcagctgcaaaaGAAGA--------AAACAAAAAGAACCAAAGAACCATGCACTTGGTTTTTGTCTTTGCTTCCT i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I a score=38077.000000 s hg38.chr17_JH159146v1_alt 238340 23 + 278131 GCCTTAGAAAACAAATTTtcttt s panTro4.chr17 66359887 23 - 82630442 GCCTTAGAAAACAAATTTtcttt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24902159 23 - 73212453 GTCTTAAAAAATGAACgttcttt i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53220558 23 + 80904711 GTCTTAAAAaacaaatgttcttt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52785257 23 + 80997621 GTCTTAAAAaacaaatgttcttt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47790072 23 + 74645514 gtcttaaaaaacaaatgttcttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10050398 23 - 75148670 GTCTTAAAAAACAAATGttcttt i chlSab2.chr16 C 0 I 318 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=2518.000000 s hg38.chr17_JH159146v1_alt 238363 3 + 278131 cat s panTro4.chr17 66359910 3 - 82630442 cat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24902182 3 - 73212453 tgt i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53220581 3 + 80904711 tat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52785280 3 + 80997621 tat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47790095 3 + 74645514 tat i papAnu2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e chlSab2.chr16 10050421 318 - 75148670 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=72645.000000 s hg38.chr17_JH159146v1_alt 238366 42 + 278131 ttacttttcttccaccatatacctctttccccctttgccatc s panTro4.chr17 66359913 42 - 82630442 ttacttttcttccaccatatacctctttccccctttgccgtc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24902185 42 - 73212453 ttacttttcttccaccatatacttccttccccctttgctatc i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53220584 42 + 80904711 ttacttttcttccaccctatacctctttccctctttgccatc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52785283 42 + 80997621 ttacttttcttccaccctatacctctttccctctttgccatc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47790098 42 + 74645514 ttacttttcttccacCCTATACCGCTTTCCCTCTTTGCCATC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10050739 42 - 75148670 ttacttttcttcccccctacacctcttttcccctttgccatc i chlSab2.chr16 I 318 I 57 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=66870.000000 s hg38.chr17_JH159146v1_alt 238408 56 + 278131 cgcagtaccaaaaaatctagagaaggcttctaatgacttgaacccccttaaagaa-t- s panTro4.chr17 66359955 56 - 82630442 cgcagtaccaaaaaatctagagagggcttctaatgacttgaacccccttaaagaa-t- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24902227 57 - 73212453 tgcagtaccaaaaaatctagagaaggcttctaatgacttgaactctcttaaagaatt- i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53220626 57 + 80904711 tgcagtaccaacaaatctagagaagtcttctaatgacttgaacccccttaaagaa-tt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52785325 57 + 80997621 tgcagtaccaacaaatctagagaagtcttctaatgacttgaacccccttaaagaa-tt i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47790140 57 + 74645514 TGCAGTACCAACAAATCTAGAGAAGTCTTCTAATGACTTGAACCCCCTTAAAGAA-TT i papAnu2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e chlSab2.chr16 10050781 57 - 75148670 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=2100704.000000 s hg38.chr17_JH159146v1_alt 238464 1220 + 278131 cagaacaaaggtcgccagtcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaactctaaacctctattttcctgtattgcaagacctgacctctttggctttgACCTTGCTGGGTATAATGGTAGATGACAGCTACAGAGTTAAGGGGTGTCTGAGCACAGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttccaggaagctgttgtttaaagatcctaattctagttcagagatgcattctaaagggtcctctctgttgctttttctccacaaattaagctcgattcggcttgtctgtgtgcatttgcatgaggaactgaactgttgttttcagtggtgacccactgtggagtcctgcccacaaatggcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaagcaaagagaatgattccctttcaagcactccataggttttatggcacctgtacttgccagagtttaagtaaaatggaagTAATATGGTCTTTGTGCATATTTACATTaagaaagaaagggcccatgtaaattagttcaaccattgtggaagatagtatggtgattcctcaaggatctagaatcagaaataccatttgatccagcaatcccattacttgttatatacccaaaggaatacaaatcattctactgtaaagacacaggcacatgtatgtttattgcagcactatttacaagagcaaagtcatggaactaacccaaacgcccatcaattatagacttgataaagaaaatgtggtacatatacaccatggaatacgatgcagccataaaacggagtgagatcatgtcctttgtagggacatggatgaagctggaaaccatcatcctcagcaaactaacacagaaacagaataccaaatacaacatgttctcactcacatatgggagttgaactttgagaacacatggacacagagaggagagcaacacatatcaggggctcttagggggtggggaatgagaggagggaacttagaggatgggtcaataggtgcagcaaaccaccaaggcacacatatacctatgtaacaaacctgcacgttctcctgcatgtatatttcatt----------ttttttt--agaag-----------aga--------------------aagaaaagaaggaa s panTro4.chr17 66360011 1221 - 82630442 cagaacaaaggtcgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaactctaaacctctattttcctgtattgcaagacctgacctctttggctttgACCTTGCTGGGTATAATGGTAGATGACAGCTACAGAGTTAAGGGGTGTCTGAGCACAGTTTACAAAAAGTAGTCTTGGCTgttgttttgttttccttccaggaagttgttgtttaaagatcctaattctagttcagagatgcattctaaagggtcctctctgttgctttttctccacaaattaagctcgattcggcttgtctgtgtgcatttgcatgaggaactgaactgttgttttcagtggtgacccactgtggagtcctgcccacaagtggcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaagcaaagagaatgattccctttcaagcactccataggttttatggcacctgtacttgccagagtttaagtaaaatggaagTAATATGGTCTTTGTGCATATTTACATTAAGAAAGAAAGGGCCCatgtaaattagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaatcagaaataccatttgatccagtaatcccattacttgttatatacccaaaggaatacaaatcattctactgtaaagacacaggcacatgtatgtttattgcagcactatttacaagagcaaagacatggaactaacccaaacgcccatcaattatagacttgataaagaaaatgtggtacatatacaccatggaatacgatgcagccataaaacggagtgagatcatgtcctttgtagggacatggatgaagctggaaaccatcatcctcagcaaactaacacagaaacagaataccaaatacaacatgttctcactcacatatgggagttgaactttgagaacacatggacacagagaggagagcaacacatatcaggggctgttagggggtggggaatgagaggagggaacttagaggatgggtcaataggtgcagcaaaccaccaaggcacacatatacctctgtaacaaacctgcacgttctcctgcatgtatATTTCATT----------TTTTTTT-Tagaag-----------aga--------------------aagaaaagaaggaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24902284 1237 - 73212453 cagaacaaaggttgccactcaccctttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgttttcctgtattgtatgacctgacctctttggctttgACCTTGTTGTATGTAGTGGTAGATGAGAGCTACAAAGTTAAGGGGCGGCTGAGCATGGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaa---gttgtttaagggtcctaattctagttcagaggtgcattctaaagggtcttctctgttgctttttctccccaaattaagctcgattcagcttgtctgtgtgcatttgcaggaggaactgaactgttgttttcagtggtgacccactgtggagttctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaattgggaaacaaataatctaagaatgaggagaaaacaaggagaatgaccccctttcgagcactccataagttttatggcacctgtacttgccagagtttatgtaaaatggaagTAATATGGTCTTCGTGCACATTTACATTAAG-AAGAAAGAGCCCatgtaaattagttcaaccattgtggaagacagtatggcgattcctcaagaatctagaaccagaaataccatttgacccagcaatcccattacttgggatatacccaaaggaatataaatcattctactataaagacacatgcacatgtatgtttattgcaacactatttacaatagcaaagacatggaaccaacccaaatgcccatcaatgatagactagataaagaaaatgtggtacatatacaccatggaataccatgcagccacaaaacacaatgagatcatgtcctttgcagggacatgggtgaagctggaagccatcatcctgagcaaactagtgcagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaatattgagaacacatggacacagagaggggagcaacacacatcaggggctgtaggggggtggggagtgaggggagggaacttagaggatgggtcaataggtatagcaaaccaccatggcacacgtatacctatgtaacaaacctgcacgttctgctgcacatgtatcccCCT----------TCTTTTT-TAGaag-----------agagaaagaaagaaagaaggaaggaaaaaagaaggaa i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53220683 1216 + 80904711 cagaacaaa-gttgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgctttcctgtattgcatgacctgacctctttggctttgACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctatttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtatttgcatgaggaactgaactgttattttcagtggtgacccagtgtggagtcctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatgacccccgttcgagcactccataggttttatggaacctggtcttttcatagtttatgtaaaatggaagtaatcaggtctttgtgcacatttatcttaag-aaaaaggagcccatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcacttgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatacagcatggaatatgatgtagccataaaacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagcaacacacatcaggggttgttgaggggtggagaatgaggggacggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcccgtt----------tttttctttagaag-----------aga--------------------aagaaagaaaggaa i rheMac3.chr16 C 0 I 33 s macFas5.chr16 52785382 1211 + 80997621 cagaacaaa-gttgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgctttcctgtattgcatgacctgacctctttggctttgACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctatttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtatttgcatgaggaactgaactgttattttcagtggtgacccagtgtggagtcctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaacgaggagaaaacaaggagaatgacccccgttcgagcactccataggttttatggaacctggtcttttcatagtttatgtaaaatggaagTAATCAGGTCTTTGTGCACATTTATCTTAAG-AAAAAGGAGCCCatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgactcagcaatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcactcgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatacagcatggaatatgatgtagccataaaacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagcaacacacattaggggttgttgaggggtggagaatgaggggacggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcccgtt----------tttttctttagaag-----------aga--------------------aagaaagaa----- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47790197 1206 + 74645514 CAGAACAAA-GTTGCCACTCACCCCttttggggtgttttgttttctttgtggagtTTTAAGAGTCATGGGTAGATTCTTCTTAAGTCTAAACCTCTGCTTTCCTGTATTGCATGACCTGACCTCTTTGGCTTTGACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTtggctgttgttttgttttccttctaggAAGTTGCTATTTAAGGATCCTAATTCTAGTTCAGAGATGCATTCTAAAGTGTCTTCTCTGTTGctttttctccccaaattaaGCTCTATTCAGCTtgtctgtgtgtatttgcatGAGGAACTGAACTGTTATTTTCAGTGGTGACCCAGTGTGGAGTCCTGCCCACAAGCAGCACATATTGATCCACCACAGAAAACCTCTAGGCCTCAGCTCAGTTCCtctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatgaCCCCCGTTCGAGCACTCCATAGGTTTTATGGAACCTGGTCTTTTCATAGTTtatgtaaaatggaagtaatcaGGTCTTTGTGCACATTTATCTTAAG-AAAAAGGAGCccatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattacttggtatatacccaaaggaatataagtcgttctactataaagacataagcactcgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatACAGCATGGAATATGATGTAGCCATAAAacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagCAACACACATCAGGGGTTGTTGAGGGGTGGAGaatgaggggagggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcctgtt----------tttttctttagaag-----------aga--------------------aaga---------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10050838 1235 - 75148670 cagaacaaaggttgccactcaccccttttggcgtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaagcctctgctttcctgtattggatgacctgacctctttggctttgACATTGTTGTGTATAATGGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGTGGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctgtttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtagttgcatgaggaactgaactgttgttttcagtggtcacccacggtggagtcctgcccacaagcagcacatattgatcctccacagaaaactgctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatggccccctttcgagcactccataggttttatggaacctggtctttttatagtttatgtaaaatgaaCGTAATCAGGTCTTTGTGCACATTTACATTAAG-AAAAAACAGCCCatgtaaattagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatatgacccagccatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcacacgtatgtttattgcagcactatttacaatagcaaagacatggaaacaacccaaatgtccatcaattatagactagataaagaaaatgtggtgcacatacaccatggaatatgatgtagccataaaacagaatgagatcatgtcctttgcagggacatggattaaactggaagccatcatcttcagcaaactaacacagaaacagaaaaccaaataccacatgttctcccacataaatgggagttgaacattgagaacacatggacac--agagcggagcaacacacatcaggggttgttgaggggtggagagtgaggggagggaacttggaggttgggtcaataggtacagcaaaccaccatggcacacatatacctatgtaacaaacctgcacattctgctgcatgtgtatcccATTTTTGTTTTTGTTTTTTTTTAgaaggaaggaaggaagga--------------------aagaaggaa----- i chlSab2.chr16 I 57 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=16394.000000 s hg38.chr17_JH159146v1_alt 239684 39 + 278131 agaaagcaagaaagcaagaaaga--gaaagaaagaaagaaa s panTro4.chr17 66361232 39 - 82630442 agaaagcaagaaagcaagaaaga--gaaagaaagaaagaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24903521 41 - 73212453 ggaaggaaggaatgaaagaaagaaggaaagaaggaaggaaa i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52786593 18 + 80997621 --------------------aga--aaaagaaaggaagga- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47791403 24 + 74645514 ---------------aagaaaga--aaaagaaaggaaggaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10052073 26 - 75148670 -------------agaaaagaaa--gaaagaaagaaagaaa i chlSab2.chr16 C 0 I 82 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e rheMac3.chr16 53221899 33 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=7716.000000 s hg38.chr17_JH159146v1_alt 239723 19 + 278131 gaaagaaagaaagaaagaa s panTro4.chr17 66361271 19 - 82630442 gaaagaaagaaagaaagaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24903562 19 - 73212453 gaaagaaagaaagaaagaa i ponAbe2.chr17 C 0 C 0 s papAnu2.chr16 47791427 19 + 74645514 ggaaggagggagggaggga i papAnu2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e chlSab2.chr16 10052099 82 - 75148670 I e macFas5.chr16 52786611 0 + 80997621 C e rheMac3.chr16 53221899 33 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=24728.000000 s hg38.chr17_JH159146v1_alt 239742 40 + 278131 agaaagaaagaaagaaagaaagaa------------agaaagaaaAGAa--gag s panTro4.chr17 66361290 52 - 82630442 agaaagaaagaaagaaagaaagaaggaaagaaagaaagaaagaaaagaa--gag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24903581 54 - 73212453 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggagagaaagaag i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53221932 40 + 80904711 gggaggaaggggggggggggaggg------------agggaggaaggaa--ggg i rheMac3.chr16 I 33 C 0 s macFas5.chr16 52786611 40 + 80997621 aggaagggagggagggagggaggg------------agggaggaaggaa--ggg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47791446 35 + 74645514 -----gggagggagggagggaggg------------agggaggaaggaa--agg i papAnu2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e chlSab2.chr16 10052099 82 - 75148670 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=1064666.000000 s hg38.chr17_JH159146v1_alt 239782 678 + 278131 ccttaaggtcgacctacaaactacagagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgttatttttctattaagatcaaaaccactgtttggatacaacagtttttttgcttgcaagctggtgaatttgtatttgtctcatggctaaagttctgaagtaaaagctatagga------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTAAATGGCCTTTATAatttttataattttatgtttatttggcaatgaagtccattttaatttccctctagcaccaccagac-tttttctctctgtaccttaagacataaattttgctctttgatttttgcctgagttgtttcctttaatatgcaaacttaaagccatttagctgacaacttcctaggggattaaaacaggttattgagaatttgaaagtctaagata-gtgg-aaaaatcttcttatgaatctataagatgtacttctatcaacatgcctactaggtctatgtatttatgtgttgtgtacacaatgtctcactactgaaaatatataaaagagctctaattaattggcttaagaaaaaaagcacttaaatcaaatac-ttattaggaaaaaagaaaagactagttgaatgctttctcaagtttatgtaactta s panTro4.chr17 66361342 658 - 82630442 ccttaaggtcgacctacaaactacagagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgttatttttctattaagatcaaaaccactgtttggatacaacagtttttttgcttgcaagctggtgaatttgtatttatctcatggctaaagttctgaagtaaaagctatagga------tgtgtgtgtgtgtgtgtgtgtgtgt----------------ATTTAAAAGGCCTTTATAatttttataattttatgtttatttggcaatgaaatccattttaatttccctctagcaccaccagac-tttttctctccgtaccttaagatataaattttgctctttgatttttgcctgagttgtttcctttaatatgcaaacttaaagccatttagctgacaacttcctaggggattaaaacaggttactgagaatttgaaagtctaagata-gtgg-aaaaatctt---atgaatctataagatgtacttctatcaacatgcctactaggtctatgtatttatgtgttgtgtacacaatgtctcactactgaaaatatataaaagagctctaattaattggcttaagaaaaaa-gcacttaaatcaaatac-ttattaggaaagaagaaaagactagttgaatgctttctcaagtttatgtaactta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24903635 678 - 73212453 ccttaaggttgacctgcaaact--agagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgctatttttctattaagataaaaaccactgtctggatacaacaggctttttgtttgcaagctggtgaatttgtatttatctcgtggctaaagttctgaagtaaaagctataggatttCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCATATCTATTTAAAAGGCCTTTATAatttttataattttatgtttaattggcaattaaatccattttaatttcccgctagcaccaccagac-tttttctctctgtaccttatgatat-aattttgctatttgatttttgcctgagttgtttcctttaacatgcaaatttaaggctatttagctgacaactccctagggcagtaaaacaggttattaagaacttgaaagcctaagata-ggggaaaaaagctccttaagtgtctatacgatgtacttctatcagcatgcctactatgtctatatatttatgtgttgtgtacacagtatctcactactgaaaatatataaaagagttctaattaattggcttaagataaaaagcacttgaatcaaatactttatcaggaa-----aaaagactagttgaatgctttctcaagtttatgtaactta i ponAbe2.chr17 C 0 T 20411 s rheMac3.chr16 53221972 650 + 80904711 ccttatagtcgacctgcaaactacagagttcctaagttctcttttttctcta-tttcttttctgccttcattaaatatgcacttatttttctattaagataaaaaccactgtttggatacaacaggttttttgtttgcaagctggtgaatttgtatttatctcatggctaaagttctgaagtagaagctatagga------tTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------g-------------------ttttataattttatgtttaattggcaattaaatccattttaatttccctctagcaccaccagacttttttctctctgtaccttatgatataaatttagctatttcatttttccctgagttgtttcctttaatatgcaaacttaaggctacttagctgacaactccctaggggagtaaaacaggttattgagaatttgaaagtctaagatagggga-agaaagcaccttaagaatctataagaggtacttctatcaacatgcctactacgtctatatatttatatgttgtgtacacaatgtctcactactgaaaatatataaaagagctctaattaattggctta----aaaaagcacttgaatcaagtactttatcaggaacaaagaaaagattagtagaatgctttct-aagtttatgtaacgta i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52786651 669 + 80997621 ccttatagtcgacctgcaaactacagagttcctaagttctcttttttctcta-tttcttttctgccttcattaaatatgcacttatttttctattaagataaaaaccactgtttggatacaacaggttttttgtttgcaagctggtgaatttgtatttatctcatggctaaagttctgaagtagaagctatagga------tTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------ATTTAAAGGGTCTTTATAatttttataattttatgtttaattggcaattaaatccattttaatttccctctagcaccaccagacttttttctctctgtaccttatgatataaatttagctatttcatttttccctgagttgtttcctttaatatgcaaacttaaggctacttagctgacaactccctaggggagtaaaacaggttattgagaatttgaaagtctaagatagggga-agaaagcaccttaagaatctataagaggtacttctatcaacatgcctactacgtctatatatttatatgttgtgtacacaatgtctcactactgaaaatatataaaagagctctaattaattggctta----aaaaagcacttgaatcaagtactttatcaggaacaaagaaaagattagtagaatgctttct-aagtttatgtaacgta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47791481 656 + 74645514 ccTTATAGTCAACCTGCAAACTACAGAGTTCCTaagttctcttttttctcta-tttcttttctgccttcattAAATATgcacttatttttctattaagataAAAACCACTGTTTGGATAcaacaggttttttgtttgcaAGCTGGTGAATTTGTATTTATCTCATGGCTAAAGTTCTGAAGTAGAAGCTatagga------ttt-------tgtgtgtgtgtgtgtgtgtgtgtgt------atttaaagggtctttataatttttataattttatgtttagttggcaattaaatccattttaatttccCTCTAGCACCACCAgacttttttctctctgtaccttATGATATAAATTTAGCTATTTCATTTTTCcctgagttgtttcctttaatatgcaaaCTTAAGGCTACTTAGCTGACAACTCCCTAGGGGAGT-AAACAGGTTA-TGAGAA-TTGAAAGTCT-AGATA-GGGA-AGAAAGCA-CTTAAGAATCTATAAGAGGTACTTCTATCAGCATGCCTACTAcgtctatatatttatatgttgtgTACACAATGTCtcactactgaaaatatataaaagagctctaattaattggctta----aaaaaGCACTTGAATCAAGTACTTTATCAGGAACAAAGAAAAGATTAGTAGAATGCTTTCT-AAGTTTATGTAAcata i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10052181 666 - 75148670 ctttaaagtcgacctgcaaactacagagttcctaagttctcttttttctctattttcttttctgccttctttaaatctgctcttattttcctattaagataaaaaccactgtttggatacaacaggtcctttgtttgcgagctggtgaagttgtatttgtctcatggctaaagttctgaagtaaaagctatagga------ttt----gtgtgtgtgtgtatgtgtgtgtgtgtgt------atttaaaaggcctttataatttttataattttatgtttaattagcaattaaatccattttaatttccctctagcaccaccagacttttttctctctgtaccttatgtaataaattttgttatttcatttttccctgagttgtttcctttaatatgcaaacttagggctatttagctgacagctccataggggagtaaaacaggttattgagaatttgaaagtctaagata-gggg-aaaaagcaccttaagaatctataagaggtacttctatcagcatgcctactacgtctatatatttatgtgttgtatacacaatgtctcactaacaaaaatatatgaaagagctctaattaatttactta----aaaaagcacttggatcaaatactttatctggaacaaagaaaagactagttcaatgttttctcaagtttatgtaactta i chlSab2.chr16 I 82 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=694739.000000 s hg38.chr17_JH159146v1_alt 240460 401 + 278131 agtaaaatctttaataaataagctacttttaaaatgattggtaaagtaatattagacatgtcttaagaattgccagcatgca-ttttgtttgcatttattaatcaagcaatttcatgtttatccctgtcaaatactataaggtgtcaaaatttggcatggggttacaaaactgtgatagaatgatctttgcttgtgtaatccttaataaataagacattgatactggtttaataaaaatagccacatcttgaatttagtcagattaccataacttcgaatcttgtggcttttagtggtctagtccacaggcagtaatatttactttgggaatgaaatattataatctttgtttcaaaggtaaactataaactattttcctctcaaagtctgttcagcctgtg s panTro4.chr17 66362000 401 - 82630442 agtaaaatctttaataaataagctacttttaaaatgattggtaaagtaatattagacatgtcttaagaattgccagcatgca-ttttgtttgcatttattaatcaagcaatttcatgtttatccctgtcaaatactataaggtgtcaaaatttggcatggggttacaaaactgtgatagaatgatctttgcttgtgtaatctttaataaataagacattgatactggtttaataaaaatagccacatcttgaatttagtcagattaccataacttctaatcttgtggcttttagtggtctagtccacaggcagtaatatttactttgggaatgaaatattataatctttgtttcaaaggtaaactataaactgttttcctctcaaagtctgttcagcctgtg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24883902 402 - 73212453 agtaaaatctttaataagtaagctagctttaaaatgattggtaaagtaatattagacatgtcttaagaatcgccagcatgcatttttgtttgcatttattaatcaagcaatttcatgcttatccctgtcaattactataaggtgtcaaaatttggcatggggttacaagactgtgatagaatgatcttttcttgtgtaatctttaataaataagactttgatactggtttaataaaaatagccacatcttgaatttagtcagattactgtaacttctaatcttgtggcttttagtggtctagtccacaggcagtaagatttactttgggaatgaactattataatctttgtttcaaaggtaaactataaactattttcctctcagagtctgttcagcctgtg i ponAbe2.chr17 T 20411 C 0 s rheMac3.chr16 53222622 401 + 80904711 agtaaaatctttaataaataagttagctttaaaattattggtacagtaataatagaggtgtcttaagaatttccagcatgcatttttgtttgcatttattaatcaagccatttcatgcttatccctgtcaaatactataaggtgtcaaaatttggcatggggttacaaaactataatagaatgatctttgattgtgtaatctttaataaataagacattgatatctgtttaa-aaaaatagccacatcttgaatttagtcagattaccgtaacttctaatcttgtggcttttggtggtctagtccacaggcagtaagatttgttttgggaatgaactgttatactctttgtttcaaaggtaaactatgaactatgttcctctcaaagtttgttcatcctgtg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52787320 401 + 80997621 agtaaaatctttaataaataagttagctttaaaattattggtacagtaataatagaggtgtcttaagaatttccagcatgcatttttgtttgcatttattaatcaagccatttcatgcttatccctgtcaaatactataaggtgtcaaaatttggcatggggttacaaaactataatagaatgatctttgattgtgtaatctttaataaataagacattgatatctgtttta-aaaaatagccacatcttgaatttagtcagattaccgtaacttctaatcttgtggcttttggtggtctagtccacaggcagtaagatttgttttgggaatgaactgttatactctttgtttcaaaggtaaactatgaactatgttcctctcaaagtttgttcatcctgtg i macFas5.chr16 C 0 I 78 s papAnu2.chr16 47792137 401 + 74645514 agtaaaatctttaataaataagttagctttaaaattattggtacaGTAATAATAGAGGTGTCTTAAGAATTTCCAGCatgcatttttgtttgcatttattaatcaagcCATTTCATGCTTATCCCTGTCAAATactataaggtgtcaaaatttggcatggGGTTACAAAACTATAATAGAATGATCTTTGATTGtgtaatctttaataaataagacattgatatctgtttaa-aaaaatagccacatCTTGAATTTAGTCAGATTACcgtaacttctaatcttgtggcttttGGTGGTCTAGTCCACAGGCAGTAAGATTTGTTTTGGGAATGAACTGTTATACTCTTTGTTTCAAAGGTAAACTATGAACTATGTTCCTCTCAAAGTTTGTTCATCCTGTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10052847 402 - 75148670 agtaaaatctttaataagtaagctagctttaaaattattgataaagtaatattagacatgtcttaagaatttccagcatgcatttttgttcgcacttattaatcaagcaatttcaagcttatccctgtcaaatactataaggtgtcaaaatttggcatgggatcacaaaactgtaatataatgatctttggttatgtaatctttaataaattagacattgatattggtttaataaaaatagtcacatcttgaatttagtcagattGctataacttctaatcttgtggcttttggtggtctagtccacgggcagtaagatttgttttgggaatgaactgttataatctttgtttcaaaggtaaactagaaactatgttcctctcaaagtatatttggcctgtg i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=1500.000000 s hg38.chr17_JH159146v1_alt 240861 1 + 278131 c s panTro4.chr17 66362401 1 - 82630442 c i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24884304 1 - 73212453 c i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53223023 1 + 80904711 c i rheMac3.chr16 C 0 I 77 s papAnu2.chr16 47792538 1 + 74645514 C i papAnu2.chr16 C 0 I 77 s chlSab2.chr16 10053249 1 - 75148670 c i chlSab2.chr16 C 0 I 1297 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e macFas5.chr16 52787721 78 + 80997621 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=882179.000000 s hg38.chr17_JH159146v1_alt 240862 3349 + 278131 Tggtaagaaagcttaaagagaaataatttcatatgagaaagaatcttgtatggtaaatttagacctaaaataaaatgactgattgtttaagaaagatggatgttcaaaacaaactagatagtccaagcatatcatgaacagtctctataagtcataataagaggatttattttaaaaaaataccaaaaaacttttatatgattgagttgtctataattaaagggaaattataatggtcttcctgaagattgggcttcatgctaaaaaaaacacttatagactaaataattagttacagcgatgaaattttcttaagggattgatttactcttaataaattataagagattttaattttttaacccaaagttcaactatttacttgctgttttctctccccttcaacttgttttcagctcatataagttattttccttaagttccgtttgttgtggcctgatgctaacaatgttttctaaaagtctaaaggaaatgttttcttccaaagtaatactctgtgcagtgtagaaggtcttttcttttgccttttggtaattggcctaacagattttatggcttattgaaacaattcctatgccattattattaatttttggtttgcttaggaaaaagaaactgagacaatttttttaaaaaattaacgttattacatccatgtatatttctgtgtgcactttgaaagtacctgtgacattgagttaccggcctttaactcctggatctaaaaaggagaccaagatctgctaaatcttaaacactgacagcaattaaaacctcatcttcaggactggtagaagatgcctatcaaaataagctgcatttctgagacgtaaggccataaatcaaagctattcagctcttcaaggctcaggaactatcacagaagaggtaggcatgtgagattataagggctgattttgagagataaaataagttcagtttctatacaagttaataattgatgtcaaaggcacactgatgcaataccagcatatgggcccctgtgtcagattaacaaggttttcttgaagtgttaactgaccccttaataaaggttataaaggttataaaaggcttatgaaagttgtatcttatggtcaagattaaaatgttatagattgtttaaaaaattttgaaaaacaaatttaattggctttatgctgttttatttgggcttattgtttgaaaaattgacttattttatgatgacctgtcatatcaagtgttttaaacctttgatatttgacaaactttccaaaatcaaattacaagttgtgtatttttctgacctaattaatcctttaagatattagtttccctcaagtccaaaaatgaaataatttgacttatttggtataaaaattatacaggaagcattgtcaaatataaaatggtgtttggttttatttgggctgtatttgtataaaattgttattggtatgtgcaccaaaattatgggaaactcctataattctgatatgacctggtgtacattatcagtaataattatgattgttatattaaattattttgtgccatggtggtaacaaattttcttgtcaattgtgttttcgcctatggctgacctaaaactttttgtcacccatggacaatttttgtcttgttttagtcctctttagaagatggttttataatcagctataaaactctaacaggtattcttgaatgcaggtttctaataactctggagattgtgacatcacaatgaaggaaaagctttcaggactcatggagacctgaaatgttcatgaatagcaagcagaacaggaattaactgcatgaactgaactaacagaagactgaagtaatctttttgacttttcgcttaaaacattgctgaccctttattttg--tttttttcagtcaaggaaacttttcttttgagctgttgtcagcttttaacaagttagtatactcctgtgaaaaatatttggagcatatttgtttctctctacctgattttccccagaattggaaactatctgtgagtattcttaacttatggcaatacagttatttgcgtaagtgcaataagaatctgttgtcatttgtaacaggacacgataaattggtcattttaccaaggcttttacttgaatggtgtgctcttctttgaggaatcaaacttgacttatggagccaataaaagccccttgggagaactggcctcataccttatctacacagtccctgtacagggttcctgacctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagaggagaggaattcacccaactcataggtatttgatggtacaaatccatggctaggctaagctttccaaaagtcttatccgaaattccttctatggaacaaagttctgatagggacaggggacagggaaattctaggcagaaaaggataggtctctgacaaaaccccaccttcaagctgaaaagccttaaaccatggcccaaagtgacaacttatatccctgttttcctgcttgaaagttgcctttttctaaaccactcatggccccatcctgtcccatcctgtgcctgtgaagatctcagactgagctggcagaggcaagaagcagctggatgttggggactacagccggacatcagagagaagcagcttgactgcagagggacagcttgatggtgtaaccttggagaagaatccggctggatacagcctaactttgaggaagattacctacccaccccatcctttttcagctctc-ttcctgctaagagccactttcatcagtaacaaaatcccccacatttaccatcctttgataggttcatgtgacctcacctttcctggacaccagacaagagcttgggagccaggagagcagatacaaaaggctgtcacactggccttctgctcttgctggtggagggcagctgcctcatgcaaaaaggcagagggctcagtgagctgttgacacttaagccatccatggaaggcagagttaaaagagcactgtaacatgacttctggggctatgggagttgcaggcacctccacctagatgctgctgtggggcccgcacagagtttgctcctgccagcacccaaaagcactcactctggctcctgcacccattcacctgcatgcttcctttcatgagcaggggactgcagcaggtccaagtgagtgaagtttgatcctgcagcactgaagtgctgattccagcactcatgcactccagttcctgcctcatttgcttgcatgctctctcctgcaaggaggtgagagtggcaggctgaataaatgagg---ccctgtcacaa s panTro4.chr17 66362402 3347 - 82630442 Tggtaagaaagcttaaagagaaataatttcatatgagaaagaatcttgtatggtaaatttagacctaaaataaaatgactgattgtttaagaaagatggatgttcaaaacaaactagaaagtccaagcatatcatgaacagtctctataagtcataa---gaggatttatttttaaaaaataccaaaaaacttttatatgattgagttgtctataattaaagggaaattataatggtcttcctgaagattgggcttcatgctaaaaaaaacacttatagactaaataattagttagagcgatgaaattttcttaagggattgatttactcttaataaattataagagattttaattttttaacccaaagttcaactatttacttgctgttttctctccccttcaacttgttttcagctcatataagttattttccttaagttctgtttgttgcggcctgatgctaacaatgttttctaaaagtctaaaggaaatgttttcttccaaagtaatactctgtgcagtgtagaaggtcttttcttttgccttttgataattgacctaacagattttatggcttattgaaacaattcctatgccattattattaaattttggtttgcttaggaaaaagaaacagagataattttttaaaaaaattaacgttattacatccatgtatatttctgtgtgcactttgaaagtacctgtgacattgagttacaggcctttaactcctggatctaaaaaggagaccaagatctgctaaatcttaagcactgacagcaattaaaacctcatcttcaggcctggtagaagatgccaatcaaaataaactgcatttctgagacataagcccataaatcaaagctattcaactcttcaaggctcaggaactaccacagaagaggtagacatgtgagattataagggctgattttgagagataaaataagttcagtttctctacaagttaataattgatgtcaaaggcacactgatgcaataccagcatatgggcccctgtgtcagattaacaaggttttcttgaagtgttaactgaccccttaataaaggttataaaggttataaaaggcttatggaagttgtatcttatggtcaagattaaaattttatagattgtttaaaaaattttgaaaaacaaatttaattggctttatgctgttttatttgggcttattgtttgaaaaattgacttattttatgatgaccggtgatatcaagtgttttaaacctttgatatttgacaaactttccaaaatcaaattacaagttgtgtatttttctgacctaattaatcctttaagatattagtttccctcaagtccaaaaatgaaataatttgacttatttggtataaaaattatacaggaagcattgtcaaatataaaatggtgtttggttttctttgggctgcatttgcataaaaatgttattggtatgtgcaccaaaattatgggaaactcctataattctgatatgacctggtgtacattatcagtaataattatgattgttatattaaattattgtgtgccatggtggtaacaaattttctcgtcaattgtgtctttgactatggctgacctaaaactttttgtcacccatggacaatttttgtcttgttttagtcctctttagaagatggttttataatcagctataaaactctaacaggtattcttgaatgcaggtttctaataactttggagattgtgacatcacaatgaaggaaaagctttcaggactcatggagacctgaaatgttcatgaatatcaagcagaacaggaattaactgcatgaactgaactaacagaagaccgaagtaacctttttgactttttgcttaaaacgttgctgaccctttgttttg--tttttttcagtcaaggaaacttttcttttgagccattgtcagcttttaacaagttagtatactcctgtgaaaaatatttggagcatatttgtttctctctacctgattttccccagaattggaaactatctgtgagtattcttaacttatggcaatacagttatttgcgtaagtgcaataagaatctggtctcatttgtaacaggacacaataaattgatcattttaccaaggcttttactcgaatggtgtgctcttctttgaggaatcaaacttgacttatggagccaatgaaatccccttgggagaactggcctcacatcttatctacacagtccctgtacggggttcctgacctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagaggagaggaattcacccaactcataggtatttaatggtacaaatccatggctaggctaagctttccaaaagtcttatccaaaattccttctatggaacaaagttctgatagggacagaggacagggaaattctaggcagaaaaggataggtccctgacaaaaccccaccttcaagctgaaaagccttaaaccacggcccgaagtgagaacttatatccctgttttcctggttgaaagttgcctttttctaaaccactcatggccccatcctgtcccatcctgtgcctgtgaagatctcagactcagctggcagaggcaagaagcagctggatgttggggactacagctggacatcagagagaagcagcttgactgcagagggacagcttgatggtgtaaccttggagaagaatccggctggatacagcctaactttgaggaagattacctacccaccccatcctttttcagctcccctttctgctaagagccactttcatcagcaacaaaatcccccacatttaccatcgtttgattggttcatgtgacctcacttttcctggacaccagacaagagcttgtgaaccaggagagcagatacaaaaggctgtcacactggccctctgctcttgctggtggagggcagctgcctcatgcaaaagggcagagggctcactgagctgttgacacttaagccatccatggaaggcagagttaaaagagcactgtaacgtgacttctggggctatgggagtcacaggcacctccacctagatgctgctgtggggcctgcacagagtttgctcctgccagcacccaaaagcactcactctggctcctgcacccattcacctgcactcttcctcccatgagcaggggactgcagcaggtccgagtgagtgaagtttgatcctgcagcactgaagtgctgattccagcactcatgcactccagttcctgcctcatttgcttgcatgctccctcctgcaaggagttgagagtggcaggctgaataaatgagg---ccctgtcacaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24884305 3347 - 73212453 Tggtaagaaagcttaaagagaaataatttcgtatgagaaagaatcttgtatggtaaatttagacctaaaataaaatgactgattgtttaagaaagacggatgttcaaaacaaaccagaaagtccaagcatatcatgaacggtctctataagtcataataagaggattta-tttaaaaaaaaaccaaaaaacttttatatgacctagttgtctataattaaagggaaattataatggtcttcctgaagattgggcttcatgttaaaaaaaacacttatagactaaataattagttagagcaatgaaattttcttaagggattgatttactcttaataaattataagagattttaattttttaacccaaagttcaactatttacttgctgttttctctccccttcaacttgttttcagctcatataagttattttccttaagttctgtttgttgtggcctgatgctaacaatgttttctgaaaatctaaaggaaatattttcttccaaaataatACTCTGTGcagtgtagaaggtcttttcttttgccttttggcaattgacctaacagattttatggtttactgaaacaattcctatgccattattattaatttttggtttgcttaggaaaaagaaactgagataattttttaaaaaaattaacgttattacatccatgtatatttctgtatgcactttgaaagtacctgtgacattgagttacaggcctttaactcctggatctaaaaaggagaccaagatctgctaaatcttaaacactgacagcaattaaagcctcatcttcaggcctggtagaagatgccaatcaaaataaactgcatttctgagacataaggccagaaatcaaagctattcaactcttcaaggctcaggaactaccacagaagaggtaggcatgtgagactataagggctgattttgagagataaaataagttcagtttctctacaagttaataattgatgtctaaggcacactgatgcaataccagcatatggtcccctgtgtcagattaacaaggttttcttgaagtgttaactgaccccttaataaaggttataaaggttataaaaggcttatggaagttgtatcttatggtcaagattaaaattttatagattgtttaaaaatttttgaaaaacaaatttaattggctttatgctattttatttgggcttattgtttgaaaaattgacttactttatgatgacctgtcacattaagtgttttaaacctttgatatttgacaaactttccaaaatcaaattacaagttatgtatttttctgacctaattaatcctttaagatattagtttccctcaagtccaaaaatgaaataatttgacttatttggtataaaaattatacaggaagcactgtcaaatataaaatggtgtttggttttctttgggctgtatttgtataaatatgttattggtatgtgcaccaaaattatgggaaactcctataattctgatatgacctgctgtacattatcagtaataattataattgttatattaaattattgtgtgccacggtggtaacaaattttcttgtcaattgtgtcttcgactatggctgccctaaaactttttgtcatccatggacaactgttgtctcgttttagtcctctttagaagatggttttataatcagctataaaactctaacaggtattcttgaatgcaggtttctaataactctggagattgtgacatcacaatggaggaaaagctttcaggactcatggagacctgaaatgttcttgaatatcaagcagaacaggaattaactgcatgaactgaactaacagaagactgaagtaatctttttgactttttgcttaaaatgctgctgaccctttgttttgtttttttttcagtcaaggaaacttttcttttcagctattgtcagcttttaacaagttagtatactcctgtgaaaaatatttggagcatatttgtttctctctacctgattttctccggaattggaaactatctgtgagtattcttaacttatggcaatagagttatttgcgtaagtgcaataagaatctgttttcatttgtaacaggacacaataa-------attttacccaggcttttacttgaatagtgtgctgttctttgaggaatcaaacttgacttatggagccaataaaagccccttgggagaactggcctcacaccttgtctacacagtccctgtacagggttcctgatctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagaggagaggaattcacccaactcttaggtatttgatggtacaaatccatggctaggctaagctttccaaaagtcttatccgaaattccttctatggaacaaagttctgacagggacagtggacatggaaattctaggcagaaaaggataggtccctgacaaaaccccaccttcaatctgaaaaaccttaaaccacggcccaaagggagaacttatatccctgttttcctgcttgaaagctgcctttttctaaaccactcatggccccatcctgtcccatcctgtgcctgtgaagatctcagactgagctggcagaggcaagaagcagctggacgttggggactacagctggacgtcagagagaagcagcttgattgcagagggacagcttgatggcataaccttggagaagaatccggctggatacagcctaactttggggaagattacccacccaccccatcctttttcagctctccttcctgctaagagccactttcattagcaacaaaatcccccatatttaccatcctttgattggctcatgtgacctcacttttcctggacacaagacaagagcttgtgagccaagagagcagatacaaaaggctgtcacactggccctctgcccttgctggtggagggcagctgcctcacgcaaaaaggcagagggctcactgagctgttaacacttaagccatccatggaaggcagagttaaaagagcactgtaacatgtactctggggctgcaggggtggcaggcacctccacctagatgctgctgtggggcctgcacagagtttgctcctgccagcacccaaaagcactcactctggctcctgcacctattctcttgcatgcttcctcccacaagcaggggactgcagcaggtcccagcgagtgaagtttgacctcactgtgatgcagtgcctattccagcacacatgaactccagttcctgcctcatttgcttgcatgctccctcctgcaaggagttgagagtggcaggctgaataaacgaggcacccctgtcacaa i ponAbe2.chr17 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e chlSab2.chr16 10053250 1297 - 75148670 I e papAnu2.chr16 47792539 77 + 74645514 I e macFas5.chr16 52787721 78 + 80997621 I e rheMac3.chr16 53223024 77 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=294171.000000 s hg38.chr17_JH159146v1_alt 244211 596 + 278131 gtcccacagaagggtcagggaaacatcctgcttcacttccatcaaagagaatttaaaagcttatgc--aaaaaaattattactattactatgactgtgctgtgtac-aataatcaggtcaagtataataaagcaaatcagctctgccatgatttgtctttagtaaaaatggtaaatgggagagagaagaattgtttcaaaaaatgatagtacacctgttgttagattctagtcttgcctaatgtttttccatttttattaatttttacagtttggactgaattctaatttttcttggctacaggtcttcaaaagattgtcttcagtttttttcttcttcttctttccaccatttttcctaatttggagtcaccgaaaactcatctgtgcttttataaagccctgtgaactgcagctataagatttaaacttcagaagaaaatattagcaaccttttcacatacttgagcctctttcatacctgcctactgatatatggacttccgagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctttccctattttctcttcataggacatga s panTro4.chr17 66365749 596 - 82630442 gtcccacaaaggggtcagggaaacgtcctgcttcacttccatcaaagcgaatttaaaagcttatgc--aaaaaaattattactattactatgactgtgctgtatac-aataatcaggtcaggtataataaagcaaatcagctctgccatgatttgtctttagtaaaaatgggaaatgggagagggaagaattgtttcgaaaaatgatagtacacctgttgttagattctagtcttgcctaatgtttttccatttttattaatttttacagtttggcctgaattctaatttttcttggctacaggtcttcaaaagattgtcttcagtttttttcttcttcttctttcccacatttttcctaatttggagtcaccgaaaactcatctgtgcttttgtaaagccctgtgaactgaagctataagatttaaacttcagaagaaaatattagcaaccttttcacatacatgagcctctttcatacctgcctactgataaatggacttccgagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctctccctatttcctcttcataggacatga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24887652 596 - 73212453 gtcccacaaaggggtcagggaaacatcctgcttcacttccatcaaagccaatttaaaagcttatgcaaaaaaaaattattattattactatggctgtgctgtatacaaataatcaggtcaagtataataaagaaaatcagccctgccatgatttgtctttagtaaaaatgggaaatgggagagagaagaattgtttcaaaaaataatagtacacctgttgttagattctagtcttgcctaatggttttccatttttattaatatttacagtttggactgaattctaatttttctttgctacaggtcttcaaaagattgtcttcagtttttt--ttcttcttctttcccccatttttcctgatttggagtcactgaaaactcatctgtgcttttgtaaagccctgcgaactgaagctataagatttaaacttcagaagaaaatatcagcaacctattcacatacatgagccactttcatacctgcctaccgatatatggacctctgagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctc-ccctattttctcttcataggacatga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48111116 588 - 81552678 gtcccacaagggggtcaggaaaacatcctgcttcagttccatcaaagccaatttaaaagcttatgc--aaaaaaa-----attattactatggctacgctgtatacaaataatcaggtcaagtataataaagaaaatcagccctgccatgatttgtctttagtaaaaatgggaaacgggagag---agaattgtttcaaaaaatgatagtacacctgttgttagattctagtcttgcctaatgtttttccatttttattattttctacagtttggactgaattctaatttttcttggctacaagccttcaaaagattgttttcagttttttt-ttcttcttctttcccccatttttcctaatttggagtcactgaaaactcatctgtgcttttgtaaagccctgcgaactgaagctagagaatttaaacttcagaagaaaataccaggaacctatttacatacataagccactttcatagctgcctactgatgtatgcacttcagagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttccttcccctattttctcttcataggacatga i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e chlSab2.chr16 10053250 1297 - 75148670 I e papAnu2.chr16 47792539 77 + 74645514 I e macFas5.chr16 52787721 78 + 80997621 I e rheMac3.chr16 53223024 77 + 80904711 I a score=114464.000000 s hg38.chr17_JH159146v1_alt 244807 133 + 278131 aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctgtctaggaataaacaatcctagccatgagatatcagatgaaacttgagaccaaagactgactttcttctaaaatgctttctc s panTro4.chr17 66366345 133 - 82630442 aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctgtctaggaataaacaatcctagccatgagatatcagatgaaacttgagaccaaagactgacttgcttctaaaatgctttctc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24888248 133 - 73212453 aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctgtctaggaataaacaatcctagccatgagatatcagatgaaatttgataccaaagactgactttcttctaaaatgctttctt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48111704 133 - 81552678 aacttcacagctggctaaaaatgaactttcctaataactcaggaattatctctctaggaataaacaatcccaaccgtgagatagcagatgaaacttgagaccaaagactgactttcttctgaaatgctttctc i nomLeu3.chr19 C 0 C 0 s chlSab2.chr16 10054547 133 - 75148670 Aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctatctagaaataaacaatcttagccatgagatatcagatgaaacttgagaccagagactgattttcttctaaaatgctttctc i chlSab2.chr16 I 1297 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112936501 5130 + 159171411 I e papAnu2.chr16 47792539 77 + 74645514 I e macFas5.chr16 52787721 78 + 80997621 I e rheMac3.chr16 53223024 77 + 80904711 I a score=410332.000000 s hg38.chr17_JH159146v1_alt 244940 368 + 278131 aaaaagatttttaagaagaaATGGGCGGAAAtgtgaaaggaaaataaaccttggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaactgcttagggcaaacctgcctcccattctattcacagtcacccctctgctcacagagataaatgcatatctgattgcctcctttggaaaggctaatcagaaactctgaagaaagcaaccatttttctcttatctacctatgacctggaag-cccctccccacttagagttgtcccgg---------------------ccttttccggacggaaccactgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccact s panTro4.chr17 66366478 367 - 82630442 aaaaagatttttaagaagaaATGGGTGGAAATTtgaaaggaaaataaaccttggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaacggcttagggcaaacctgcctcccattctattcacagtcacccctctgctcacagagataaatgcatatctgattgcctcctttggaaaggctaatcagaaactctgaagaaagcaaccatttttctcttatctacctatgacctggaag-cccctccctgcttagacttgtcccgg---------------------ccttt-ccggacagaaccactgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccact i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24888381 366 - 73212453 caaaagatttttaagaagaaaagaggggaaAtgtgaaaggaaaataaacctgggggccctgaaatcactaaggtaaacgggaaagtcaagctgggaactgcttagggcaaacctgcttcccattctattcctagtcacccctctgcccactgagttaaatgcatatctgattgcctcctttggaaaggctaatcag-aactctaaagaaagcaaccatttgtctcttatctacctatgacctggaag-cccctccccgcttagagatgtcccgc---------------------ctttt-ccggaccgaaccactgttcatcttacatatgttgattgatgtctcatgtctctctaaaatgtataaaaccaagctgtgctctgaccact i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48111837 367 - 81552678 aaaaagatttttaagaagaaaagggGGGAAAtgtaaaaggaaaataaaccctggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaactgcttagggcaaacctgcctcccattctgttcaaagtcactcctctgctcgctaagttaaatgcatatctgattgcctcctttggaaaggccaatcagaaactctaaagaaagcagccatttgtctcttatctacctatgagctggaag-cccctccccgcttagagttgtctcgc---------------------ctttt-ctggaccgaatcaatgttcatcttacatatgttgattgatgtctcatgtcttcctaaaacgtataaaaccaagctgtgctctgaccact i nomLeu3.chr19 C 0 C 0 s chlSab2.chr16 10054680 367 - 75148670 caaaagatttttaagaggaagagTGGGGAAAtgtgaaaggaaaataaatcttggggccctgaaatcaccaacctaaagtggaaagtcaagttgggaactgcttagggcaaacctggctcccattctattcaaagtcacccctctgctccctgagataaatgcatatctgattgcctcctttggaaagactaataagaacctctaaagaatgcaaccatttgtctcttatctacctatgacctggaag-tccctccccacttagagtggtcctgc---------------------ctttt-cgggagcaaaccaatgttcatcttacatatgttgattgatgtctcatgtctccctaaaaggtataaaacccagccgtgctctgacccgt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112941631 381 + 159171411 AAAAAG------AAGAAGAAAAGGGGAGAAAtgtgaaaggtaaataaaccttgaggccctgaaatcactaagctaaagggaaacgtcaagctgaaaacttctttgggccaagctatctcccattctattc--agtcatccctctgctcactgagatatatgcatacccgagtgccatctttgggaagactaatcagaaactctaaagaatgcaaccatttgtctcttatctacctttgacctggaagccccctcctcacttagagttgtcccacctttgcttagagttgtcctctctttt-cgagactgaaccaatattcaccttatatatgttgattgatgtctcatatctccctaaaatgtataaaatcaaactgtgctctgacaact i calJac3.chr5 I 5130 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e papAnu2.chr16 47792539 77 + 74645514 I e macFas5.chr16 52787721 78 + 80997621 I e rheMac3.chr16 53223024 77 + 80904711 I a score=2075416.000000 s hg38.chr17_JH159146v1_alt 245308 719 + 278131 ttgggcacctgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaataaactgagacctctctctgattttgcgggttcaGAAGGCTATACTGAATTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAGGTTCTTTTCACTTGAACCTTCGTGCATCAGCACCTAACTCTTTCGCAAGATAAGGGGTCCTACGGAATACCAGCAGACCCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAGCCCTTTATTCCTGATGTAGCTTCCCCAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTCCTAACTACAAATTCCTTCCAGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGtaaccttttcctcattttaatagtaaaaacagccacaacaagaaaaacacccctaggcggagatttcatatgctaatgatacatgcaatgggtgttaca-ccat---gttgatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcaccggtactttttgattatgtacgtatagctctcatgagaggaattccttttacagcactagctgctgtctctcccattgagcagcccactctg s panTro4.chr17 66366845 719 - 82630442 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcgaaataaactttctaaattaactgagacctgtctccaattttgagggttcacaAGGCTATACTGAATTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAGGTTCTTTTCACTTGAACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGGGTCCTACGGAATACCAGCAGACCCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAGGCCCTTTATTCCTGATGTAGCTTCCCCAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTCCTAACTACAAATTCCTTCCAGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAAActtttcctcattttaatagtaaaaacagccacaacaagaaaaacacccctaggcggagatttcatatgctaatgatacatgcaatgggtgttaca-tcat---gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcaccggtactttttgattatgtacgtatagctctcatgagaggaattccttttacagcactagctgctgtctctcccattgagcagcccactctg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24888747 716 - 73212453 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttgggggttcacaAGGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAGGTTCTTTTCACTTGAAGCTTTGTGCATCAGCGCCTAACTCTTTCGCAAGATAAGGGGTCCTACGGAATACCAGCAGA-CCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAACCCTTTATTCCTGATGTAGCTTCCCCAATCTCTAGCCAA-TTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATGCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGCACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTTGAGGTTCAGCTTATAGtaaccttttcctcattttaatagtaaaaacaaccgcaacaagaaaaacacccc-aggtggagatttcatatgctaatgatacatgcaatgggtgttaga-ccac---gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcaccagtattttatgattatgtatgtatagctcccataaaaggaattcctcttacagcactagctgctgtctctcccactgagcagtccactctt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112204 722 - 81552678 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttgggggttcacaAGGCCACACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAGGCTTGTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTCGCAAGATAAGGGGTCCTACAGAATACCAGCAGA-CAACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAGCCCTTTATTCCTGATGTAGCTTCCCCAATCTCTAGCCAGTTTGCACTAAAAGCCCAAGAAACTATTAACTACAAATTCCTTCCtgggatggg--tgggtgggtgggagggtgggCAGGGACTTCGCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAAacttttcctcattttaatagtaaaaacaaccacaacaagaaaaacacccctaggtggagatttcatatgctaatgatacatgcgatgggtgttagacccat---gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcgccagtattttttgattatgtatgtgtagctcccataaaaggaatccctcttacagcactagctgctgtctctcccattgagcagcccactctg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53223101 711 + 80904711 ttgggcacatgtcttcagaacctcctgaggctgtgtcacagatgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggggttcacaAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGATCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAG---------CCTGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAGTTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGTAAcctttgcctcattttaacagtaaaaacagccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccatgtggtggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatggttatatatgtatagctctcatgaaaggaattcctcttacagcactagatgctgtctctcccactgagaagcccactctg i rheMac3.chr16 I 77 I 26 s macFas5.chr16 52787799 711 + 80997621 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggggttcacaAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAG---------CCTGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAGTTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGTAAcctttgcctcattttaacagtaaaaacagccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccatgtggtggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatgattatatatgtatagctctcatgaaaggaattcctcttacagcactagatgctgtctctcccactgagaagcccactctg i macFas5.chr16 I 78 C 0 s papAnu2.chr16 47792616 716 + 74645514 ttggGCACATGTCTTCAGAACCTCCTGAGGC-GTGTCACAGGTGTACATccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggGGTTCACAAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAGCCCTTTTTTCCTGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAACCTTTGCCTCATTTTAACAGTAAAAACAGCCACAACAAGAAAAACACCCCTAGGTGGAGATTTTATATGCTAATCATCCATGCGATCGGTGTTAGA-CCAT---GTGGATACTGAGCACATGTGCCAACCGCAGGTCTGCTTTTGCATACTTGACCTCACCAgtattttatgattatatatgtatagCTCTCATGAAAGGAATTCCTCTTACAGCACTAGATGCTGTCTCTCCCACTGAGAAGCCCACTCTG i papAnu2.chr16 I 77 C 0 s chlSab2.chr16 10055047 717 - 75148670 ttgggcacatgtcttcagaacctcctgaggctatgtcacaggtgtacatccccaaccttggcaaaatacactttctaaattaactgagacctgtctcagattttcgggattcacaAGGCCATACTGACTTGTCCCTTTTTTGAAGTCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAACACCAGCAGA-CCACCAGAAGGTTACAAGTCCCTGATACCTGGTACAGCCT-GGAAAGAGAGCAAAAGCCCTTTTTTCCTGATGCAGCTTCCCCAATCTCCAGCCAGTTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATTCCTTCCTGGGGTG-----GGGTATGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGtaacctttccctcattttcatagtaaaaacaaccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccac---atggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatgattacatatgtatagctctcatgaaaggaattcctcttacagcgctagatgctgtctctcctgctgagaagcccactctg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942012 702 + 159171411 ttgggcacatgtcatcaggacctcctgatg-------acaggtatgcatccccactctgggcaaaataagctttctaaattgacttagacctgtctcaaatt-------ttcaCAAAGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGCACTTTTTAGAGCAGGCTCTTTTTGCTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGGATCCTGCAGAATACCAGCAGA-CCACCAGAGAGTTACAAGTTCCTGATACCTAGGACCACCTGGGAAAGAGAACAAGAGCCCTTTATTCCTGATGTAGCTTCCCAAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTATTAGCTACGAGTTCCTTCCTGAGGTGGGATAGGGTGGGTGGGAAGGTGGCCAGGGAATTCTCTGGGATCCTGCATGCACAGCTAGGCTCAAGGTTCAGcttatagtaaccttttccttattttaatggtaaaaagaacaacaagaagaaaaacatccctagatggagattttatatgttgatgatagatacgatgggtgttgga-ccat---gacaatcctgggcacatatgccaactgcaggtctgtctttgcatacatgacctcaccagtattttatgattatgcatgtatagctcccataaaaggaacttgtcttacagcactagcttctggctcaccttttga-------actctg i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T a score=2629.000000 s hg38.chr17_JH159146v1_alt 246027 3 + 278131 cct- s panTro4.chr17 66367564 3 - 82630442 cct- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889463 3 - 73212453 cct- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112926 3 - 81552678 cct- i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52788510 3 + 80997621 TCT- i macFas5.chr16 C 0 I 16 s papAnu2.chr16 47793332 3 + 74645514 TCT- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055764 3 - 75148670 tct- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942714 3 + 159171411 -ctt i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e rheMac3.chr16 53223812 26 + 80904711 I a score=6450.000000 s hg38.chr17_JH159146v1_alt 246030 4 + 278131 ctca s panTro4.chr17 66367567 4 - 82630442 ctca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889466 4 - 73212453 ctca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112929 4 - 81552678 ctca i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47793335 4 + 74645514 TTCA i papAnu2.chr16 C 0 I 1 s chlSab2.chr16 10055767 4 - 75148670 ctcA i chlSab2.chr16 C 0 I 12 s calJac3.chr5 112942717 4 + 159171411 ctta i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e macFas5.chr16 52788513 16 + 80997621 I e rheMac3.chr16 53223812 26 + 80904711 I a score=-2321.000000 s hg38.chr17_JH159146v1_alt 246034 2 + 278131 -aa s panTro4.chr17 66367571 2 - 82630442 -aa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889470 2 - 73212453 -aa i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112933 2 - 81552678 -at i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47793340 1 + 74645514 -A- i papAnu2.chr16 I 1 I 11 s calJac3.chr5 112942721 2 + 159171411 aa- i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e chlSab2.chr16 10055771 12 - 75148670 I e macFas5.chr16 52788513 16 + 80997621 I e rheMac3.chr16 53223812 26 + 80904711 I a score=179501.000000 s hg38.chr17_JH159146v1_alt 246036 223 + 278131 gggtacttttgctttgcaacaaacttcttcgctt-----------------actcttactttggatttgctctcaaattctttcgcgcagcaaattcaagaatctgaactggtccaccaacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGATGAGATGTACTTTTTAAATTTCACACAGAAGAGTGAGGAGT s panTro4.chr17 66367573 223 - 82630442 gggtacttttgctttgcaacaaacttcttcgctt-----------------actcttactttggatttgctctcaaattctttcacgcagcaaattcaagaacctgaactggtccaccaacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGAAGAGATGTACTTTTTAAATTTGACACAGAAGAGTGAGGAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889472 223 - 73212453 gggtacttttgctttgcaacaaacttcttcgctt-----------------actcttgctttggatttgctctgaaattcttttgcacagcaaattcaagaacctgaactggtcgaccgacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGATGAGATGTACTTTTTAAATTTGACACAGGAGAGTGAAGAGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112935 221 - 81552678 gggtacttttgctttgcaacaaacttcttccctt-----------------actcctactttggattggccctcaaattcttttgcacagcaaattcaagaacctgaactggtccaccgacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAATAGGATGAGATGTGCCTTTTGAA--TGACACAGAAGAGTGAGGAGT i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112942723 237 + 159171411 gtgtactttttctttgcaatgaacttctttgcttactctttggatttgctcactcttactttggatttgctctaaaattcttttgtgcagcaaattcaagaacctgaactggtccac---caacaaAATAACAAAATTCCCTTTTATGACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGCAAGGCAGTAGGATGAGATGCACTTTTAAAATTTGACACAGAAGAGTGAGGAGT i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e chlSab2.chr16 10055771 12 - 75148670 I e papAnu2.chr16 47793341 11 + 74645514 I e macFas5.chr16 52788513 16 + 80997621 I e rheMac3.chr16 53223812 26 + 80904711 I a score=1365.000000 s hg38.chr17_JH159146v1_alt 246259 1 + 278131 A s panTro4.chr17 66367796 1 - 82630442 A i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889695 1 - 73212453 A i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48113156 1 - 81552678 A i nomLeu3.chr19 C 0 C 0 s chlSab2.chr16 10055783 1 - 75148670 A i chlSab2.chr16 I 12 C 0 s calJac3.chr5 112942960 1 + 159171411 A i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e papAnu2.chr16 47793341 11 + 74645514 I e macFas5.chr16 52788513 16 + 80997621 I e rheMac3.chr16 53223812 26 + 80904711 I a score=5096.000000 s hg38.chr17_JH159146v1_alt 246260 2 + 278131 TT s panTro4.chr17 66367797 2 - 82630442 TT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889696 2 - 73212453 TT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48113157 2 - 81552678 TT i nomLeu3.chr19 C 0 I 1579 s macFas5.chr16 52788529 2 + 80997621 TT i macFas5.chr16 I 16 C 0 s papAnu2.chr16 47793352 2 + 74645514 TT i papAnu2.chr16 I 11 C 0 s chlSab2.chr16 10055784 2 - 75148670 TT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942961 2 + 159171411 TT i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e rheMac3.chr16 53223812 26 + 80904711 I a score=7312.000000 s hg38.chr17_JH159146v1_alt 246262 4 + 278131 ACCA s panTro4.chr17 66367799 4 - 82630442 ACCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889698 4 - 73212453 ACCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48114738 4 - 81552678 aCCA i nomLeu3.chr19 I 1579 C 0 s macFas5.chr16 52788531 4 + 80997621 ACTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793354 4 + 74645514 ACTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055786 4 - 75148670 ACCG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942963 4 + 159171411 ACCA i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e rheMac3.chr16 53223812 26 + 80904711 I a score=78686.000000 s hg38.chr17_JH159146v1_alt 246266 26 + 278131 TGATATCATAAGTTCTAAAATAATGG s panTro4.chr17 66367803 26 - 82630442 TGATATCATAAGTTCTAAAATCATGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889702 26 - 73212453 TGATATCATAAGTTCTAAAATCATGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48114742 26 - 81552678 TGGTATCATAAGTTCTAAAATCATGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53223838 26 + 80904711 TGATATCCTAAGTTCTAAAATCATGG i rheMac3.chr16 I 26 C 0 s macFas5.chr16 52788535 26 + 80997621 TGATATCCTAAGTTCTAAAATCATGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793358 26 + 74645514 TGATATCCTAAGTTCTAAAATCATGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055790 26 - 75148670 TGATATCCTAAGTTCTAAAATCATGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942967 26 + 159171411 CGATATCATAAGTTCTAAAATCATGA i calJac3.chr5 C 0 I 484 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T a score=59206.000000 s hg38.chr17_JH159146v1_alt 246292 20 + 278131 ATGAACTTACAAACAACAAT s panTro4.chr17 66367829 20 - 82630442 ATGAACTTACAAACCACAAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889728 20 - 73212453 ATGAACTTACAAACAACAAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48114768 20 - 81552678 ATGAACTTATAAACAACAAT i nomLeu3.chr19 C 0 I 3 s rheMac3.chr16 53223864 20 + 80904711 ATGAACTTATAAACAACAAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52788561 20 + 80997621 ATGAACTTACAAACAGCAAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793384 20 + 74645514 ATGAACTTATAAACAGCAAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055816 20 - 75148670 ATGAACTTATAAACAGCAAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943477 20 + 159171411 atgaacTTATAAACTACAAT i calJac3.chr5 I 484 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T a score=2548.000000 s hg38.chr17_JH159146v1_alt 246312 1 + 278131 A s panTro4.chr17 66367849 1 - 82630442 A i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889748 1 - 73212453 A i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53223884 1 + 80904711 A i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52788581 1 + 80997621 A i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793404 1 + 74645514 A i papAnu2.chr16 C 0 I 3 s chlSab2.chr16 10055836 1 - 75148670 A i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943497 1 + 159171411 A i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e nomLeu3.chr19 48114788 3 - 81552678 I a score=1500.000000 s hg38.chr17_JH159146v1_alt 246313 1 + 278131 C s panTro4.chr17 66367850 1 - 82630442 C i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889749 1 - 73212453 C i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53223885 1 + 80904711 C i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52788582 1 + 80997621 C i macFas5.chr16 C 0 C 0 s chlSab2.chr16 10055837 1 - 75148670 C i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112943498 0 + 159171411 C e papAnu2.chr16 47793405 3 + 74645514 I e nomLeu3.chr19 48114788 3 - 81552678 I a score=1911.000000 s hg38.chr17_JH159146v1_alt 246314 1 + 278131 T s panTro4.chr17 66367851 1 - 82630442 T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889750 1 - 73212453 T i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53223886 1 + 80904711 T i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52788583 1 + 80997621 T i macFas5.chr16 C 0 C 0 s chlSab2.chr16 10055838 1 - 75148670 T i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943498 1 + 159171411 T i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e papAnu2.chr16 47793405 3 + 74645514 I e nomLeu3.chr19 48114788 3 - 81552678 I a score=2100.000000 s hg38.chr17_JH159146v1_alt 246315 1 + 278131 G s panTro4.chr17 66367852 1 - 82630442 G i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48114791 1 - 81552678 G i nomLeu3.chr19 I 3 C 0 s rheMac3.chr16 53223887 1 + 80904711 G i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52788584 1 + 80997621 G i macFas5.chr16 C 0 C 0 s chlSab2.chr16 10055839 1 - 75148670 G i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943499 1 + 159171411 G i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24889751 0 - 73212453 C e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e papAnu2.chr16 47793405 3 + 74645514 I a score=149737.000000 s hg38.chr17_JH159146v1_alt 246316 84 + 278131 GGGGCTTTACCTATCCCAAAGCATTCCGTATATCAAATTGAAACAATGAAAAGCTTCTCTTCTATTTTAGTTTATCTGTGACAT s panTro4.chr17 66367853 84 - 82630442 GGGGCTTTACCTATCCCAAAGCATTCCATATATCAAATTGAAACAATGAAAAGCTTCTATTTTATTTTAGTTTATCTGTGACAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889751 84 - 73212453 GGGGCTTTACCTATCCCAAATCATTCCACACATCAAATTGAAACAATGAAAAGCTTCTATTTTATTTTAGCTTATCTGTGACAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48114792 84 - 81552678 GGGGCTTTACCTATCCCAAGCCATTCCATATATCACATTGAAACAATCAACAGCTTTTATTTTATTTTAGTTTATGTGTGACAT i nomLeu3.chr19 C 0 T 88 s rheMac3.chr16 53223888 48 + 80904711 GGGGCTTTACCTATCCGAAAGCATTCCATTTATCAAATTGAAACAGTG------------------------------------ i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52788585 48 + 80997621 GGGGCTTTACCTATCCGAAAGCATTCCATTTATCAAATTGAAACAGTG------------------------------------ i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793408 84 + 74645514 GGGGCTTTACCTATCCGAAAGCATTCCATATATCAAATTGAAACAGTGAAaagcttctattttattttagttgatcTGTGACAT i papAnu2.chr16 I 3 C 0 s chlSab2.chr16 10055840 48 - 75148670 GGGGCTTTACCTATCCAAAAGCATTCCATATATCAAATTGAAACAGTG------------------------------------ i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943500 84 + 159171411 GGGGCTTTACCTACCCCAAACCATTCTGCTTATTCAACTAAAACAATGAAAAGCTTCTATTTTATTTTAGTTTATCTGTGACAT i calJac3.chr5 C 0 T 86 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T a score=546.000000 s hg38.chr17_JH159146v1_alt 246400 1 + 278131 T s panTro4.chr17 66367937 1 - 82630442 T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889835 1 - 73212453 T i ponAbe2.chr17 C 0 C 0 s papAnu2.chr16 47793492 1 + 74645514 T i papAnu2.chr16 C 0 T 88 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112943584 86 + 159171411 T e chlSab2.chr16 10055888 0 - 75148670 C e macFas5.chr16 52788633 0 + 80997621 C e rheMac3.chr16 53223936 0 + 80904711 C e nomLeu3.chr19 48114876 88 - 81552678 T a score=546.000000 s hg38.chr17_JH159146v1_alt 246401 1 + 278131 A s panTro4.chr17 66367938 1 - 82630442 A i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889836 1 - 73212453 A i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48114788 1 - 81552678 A i nomLeu3.chr19 T 88 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112943584 86 + 159171411 T e chlSab2.chr16 10055888 0 - 75148670 C e papAnu2.chr16 47793493 88 + 74645514 T e macFas5.chr16 52788633 0 + 80997621 C e rheMac3.chr16 53223936 0 + 80904711 C a score=1000.000000 s hg38.chr17_JH159146v1_alt 246402 1 + 278131 C s panTro4.chr17 66367939 1 - 82630442 C i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889837 1 - 73212453 C i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48114789 1 - 81552678 C i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47793405 1 + 74645514 C i papAnu2.chr16 T 88 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T e calJac3.chr5 112943584 86 + 159171411 T e chlSab2.chr16 10055888 0 - 75148670 C e macFas5.chr16 52788633 0 + 80997621 C e rheMac3.chr16 53223936 0 + 80904711 C a score=1131159.000000 s hg38.chr17_JH159146v1_alt 246403 442 + 278131 TAGGGGTTATACATATCCCAAACCATTCCGTATATCAAATTGAAACAATCAAAAGCTTCTATTTTATTTTAGTTTATGTGTGACATTGGAGCAGTTTGGCACTATGATTTCATCCCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGTAAACTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAACTTG----AACAGTGAGAGAAAGAGGGAGCAGGGAGAAAGCGGGAGAGCACGGGAGGGGCAGCCTCCTACCTTTCCAAAAGAAAAGAATGACTGAAAGGCTGACAGACAAATAGTATGTTTGAAAGGG s panTro4.chr17 66367940 442 - 82630442 TAGGGGCTTTACGTATCCCAAACCATTCCATATATCAAATTGAAACAATCAAAAGCTTCTATTTTATTTTAGTTTATGTGTGACATTGGAGCAGTTTGGCACTATGAGTTCATCCCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGTAAACTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAACTTG----AACAGAGAGAGAAAGAGAGAGCAGGCAGAAAGCGGGAGAGCACGGGAGGGGCAGCCTCCTACCTTTCCAAGAGAAAAGAATGACTGAAAGGCTGACAGACAAATAGTATGTTTGAAAGGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24889838 445 - 73212453 TA-GGGCTTTACCTATCCCAAACCATTCCATATATCAAATTGAAACATTCAAAAGCTTCTATTTTATTTTAGTTTATGTGTAACATTGGAGCAGTTTGGCACTATGAATTCATACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCACGAATCAGTAAACTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAATATTTCTAAATGAAAAGTTTAATACAATATATTTTCTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAACTTGATgaaacagagagagaaagagagagcagggagaaagcgggagagCATGGGAGGGGCAGCCTCCTACCTTTCCAAGAGAAAAGAATCACTGAAAGGCTGACAGACAAATAATATGTTTGAAAGGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48114790 444 - 81552678 TGGGGGCTTTACCTATCCCAAGCCATTCCATATATCACATTGAAACAATCAACAGCTTTTATTTTATTTTAGTTTATGTGTGACATGGGAGCAGTTTGGCACTATTAGTTCATACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGTAAATTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAATTCGAACAAACAGAGACAGAAAGAGAGAACAGGGAGAAAGCAGGAGAGCTTGGAAGGGGCAGCCTCCTCCCATTACAAGAGAAAAGAATGACTGAAAGGCTGACAGACAAATA--ATGTTTGAAAGGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53223936 394 + 80904711 --------------------------------------------------AAAAGCTTCTATTTTATTTTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCACAAAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACA------ATAAAGAACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGCAAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAATGGCTGACAGACAAATAATATGTTTGATAGGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52788633 393 + 80997621 --------------------------------------------------AAAAGCTTCTATTTTATTGTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCAC-AAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACA------ATAAAGAACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGCAAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAATGGCTGACAGACAAATAATATGTTTGATAGGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793406 443 + 74645514 TGGGGGCTTTACCTATCCGAAAGCATTCCATATATCAAATTGAAACAGTGAAaagcttctattttattttagttgatcTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGaaagtaatcac-aaaaaatacaaaaaacaataataaaagatttctacatgaaaagtttaataaaatatattttgtgaacACA------ATAAagaactaataaaatagaaaaatgctgGCAAACGTGATCAAAcagaaaggcaaagagagagcagGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAAAGGCTGACAGACAAATAATATGTTTGATAGGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055888 393 - 75148670 --------------------------------------------------AAAAGCTTCTATTTTATTTTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCAC-AAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACA------ATAAAGAACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGCAAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGGGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAAAGGCTGACAGATAAATAATATGTTTGAAAGGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943498 443 + 159171411 TGGGGGCTTTACCTACCCCAAACCATTCTGCTTATTCAACTAAAACAATGAAAAGCTTCTATTTTATTTTAGTTTATCTGTGACATGAGAGCAGTTTGGCAC--TGAGTTTATATCTGAAGTCTTACTTTGGAGTCAGGCTTTGAGATTCCCCTTCCACTGCATTCCCACCTGACCTCAATGAATCAGTAAACCCAATGCATATAATCAC-AAAAAATATGACAAACAATAATAAAAGATTTTTAAATGAAAAGTTTAATAAAATCTACTTTGTGAACACAATAATGATAAAGAAGTAATAAAACAGAAAAAGTCTGGCAAACCTG----TTCAGAGAGAGGAAGAGGGAGCAGGGAGAAAGCACGAGAGCATGTGAGGGGCAGCCTCCTATCTTTATAAGAGAAAAGAATGACTGAAAGGCTGATAGACAAATAACATTTTTGAAAGGG i calJac3.chr5 T 86 C 0 e canFam3.chr9 21605791 3367 + 61074082 T e mm10.chr11 22456485 2857 - 122082543 T a score=1672314.000000 s hg38.chr17_JH159146v1_alt 246845 447 + 278131 AGATAATGTGTACCTAATTGGGAAGGATATTCTGTAGGCTCAAAATGATTTTAAAAAATGAGGAATTTAGAGGATTGGAATTATTTCTTAGCTAGTGGATTACAAATTA--ATTCGTATTTGGTGCCATGACTGGAAGAAAAATAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGATACATGAGGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATATTCAGCACAGAAGAATGGTCTACATTTGTGGACCAGCGGCGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAGAGGA---GGCGCAGCACACGGGGCGGGGACAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAC s panTro4.chr17 66368382 447 - 82630442 AGATGATGTGTACCTCACTGGGAAGGATATTCTGTAGGCTCAAAATGATTTTTAAAAATGAGGAATTTAGAGGATTGGAATTATTTCTTAGCTAGTGGATTACAAATTA--ATTCGTATTTGGTGCCATGACGGGAAGAAAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAAGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGCCCTAATATTCAGCACAGAAGAATGGTCTACATTTGTGGACCAGCGGTGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAGAGGA---GGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGATTCGGCCACAGACTGGACGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24890283 447 - 73212453 AAATAATGTCTACCTCACTGGGAAGGATATTCTGTAGGCTCAAATCGATTTTAAAAAATGATAAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--ATTTGTATTTGGTGCCACAACTGGAAGAAAAAGAAAGCAAGGGAAGGAGTTTAAAATGAACCAGGATGTTTTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAGGTCCACCATGCTGAATGACATCAATCCCACTCCATGTGTCCTAACAGTCAGCACAGAAGAATGGTCTACAACTGTGGGCCAGTGGTGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAGAGGA---GGCACAGCACATGGGGCGGGGGCAGGTGGAAATGACGCAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115234 446 - 81552678 AGATAATGTCTACCTCATTGGGAAGGATATTCTGTAGGCTCAAAATGATTTT-AAAAATGAGGAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--ATTCGTATTTGGTGCCATGACTGGAAGAAAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATATCTTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAGGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATAGTCAGCACAGAAGAATCGTCTACATCTGTGGGCTTGCGGTGAAGGGAGAGATGAGCC--AGGGT-ACTGGGCTCAGCAGCAAGAGGA---GGCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53224330 437 + 80904711 AGATAATGTCTACCTCATTGGgaaggatactctatcggctcaaaatgattta-aaaaatgaggaatttagaggattggaataatttcttagctagtgaattacaaatta--attcacatttggtgccatgactggaagaaaaagaaagcaagggagggagtttacaatgaaccagaatgttctcacagagtCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ACCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCA-CACAGAAGAAGGGTCTACATCTGTGGGCCAGCGGTGAAGGGGGAGGTGAGCC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGCGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789026 437 + 80997621 AGATAATGTCTACCTCATTGGgaaggatactctatcggctcaaaatgattta-aaaaatgaggaatttagaggattggaataatttcttagctagtgaattacaaatta--attcacatttggtgccatgactggaagaaaaagaaagcaagggagggagtttacaatgaaccagaatgttctcacagagtCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ACCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCA-CACAGAAGAAGGGTCTACATCTGTGGGCCAGCGGTGAAGGGGGAGGTGAGCC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGCGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793849 438 + 74645514 AGATAATGTCTACCTCATTGGGAAGGATACTCTATCGGctcaaaatgattta-aaaaatgaggaatttAGAGGATTGGAATAATTTCTTAGCTAGTGAATTACAAATTA--ATTCACATTTGGTGCCAtgactggaagaaaaagaaagcaagggagGGAGTTTACAATGAACCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ACCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCAGCACAGTAGAAGGGTCTGCATCTGTGGGCCAGCGGTGAagggggaggtgagcc--agggc-agggggttcagcagcaagagga---ggcgcagcacaaggggcgggggcAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056281 438 - 75148670 AGATAATGTCTACTTCAATGGgaaggatactctatcggctcaaaatgattta-aaaaatgaggaatttagaggattggaataatttcttagctagtgaattacaaatta--attcacatttggtgccatgactggaagaaaaagaaagcaagggagggagtttacaatgaaccagaatgttctcacagagtCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ATCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCAGCACAGAAGAAGGATTTACATCTGTGGGCCAGCAGTGAGGGGGAAGGTGAGCC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGTGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943941 447 + 159171411 AAATAATGTCTACCTCATTGGGAAGGACAATTTATAGGCTCAAAATGATGAA-GAGAATGAAGACTTTACAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--ATTCCTATTTGGTTCCATCACTGGAAGAAAAAGAAAGTAAGGGAGGGAGTTTAAAAGGAATCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAGGTCTACCCTGTGGAGTGACATCAATCCCACTCCATGAATCCTAATGGTCAGCACAGAAGAAAGGTCTACATCTGTGGGCCAGCAGTGAAGGGAGAGGTGAGCC--AGGGCAAGTGGGCTCAGCAGCAAGAGGA---GGTGCAGCACATGGGGCGGGGACAGGTGGAAATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGACACTCGGCCACAGACTGGACgcag i calJac3.chr5 C 0 C 0 s mm10.chr11 99627359 424 + 122082543 AGAAAGTGTCTTATTTACTGGGAAGAATAATTTAGAGCTACAAAGTCAATCC------------ATTTGGAGAACTAGGATGAATTCTTAGCTCACAACTTAGAGATTA--ATTTCAGCACAGTGCAAACATTAGAAAGACATGGTAGCAAACAAGAGAATGTAATGTGAGCCAGGAGGTGTTGACTGATTCTGCGGAAGATGGT----GGCTCACAAGAATTGTGTGGTCCATCCTGCTAAATGATGCCAAACAGATTCCACGTGTCCTACGGGTTCACATGCAAGAATGGTACATATCTGT-------------ACGTGGAGATGTGCC-TAGATT-AGGGATCTCAGCAGCAGCAGGGTGTGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAGACTGGTCTCAG i mm10.chr11 n 2857 I 1 s canFam3.chr9 39468875 443 - 61074082 AGATAAT---CATTTTGTTAGGAAGGATAATCTAGAGCCCCAAAGTGATAAGGAAGAATGACAAATTTAGAGGAATGGGATAATTTTTTAGCTGATAGGTTACAAATTAATATACATATTTGGTGCCAATACTGAAAGGAAAAGATAATAATGGAAGGAGCTTAACATAAACCAGAATGT----ACTGAGTCAATGG--GATGGTGGTGGGATCCCTGGAATCATGAGGCTCAAC-TGTTCAATGATGTTAACCAGACTCCATGTGTCCTAACACTCAGCGCAAAAGAAGGGTCTTTATCTGTGGGGCAGAGGTAAATGGAAATAGTGGTCACAGGAC-AGGGGGCTCAGCAGGAAGAGGA---GGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGATAGCAGGTAGTGTGGCAGGAGACCCGGCCACAGACTGGGCGCAg i canFam3.chr9 I 8631 C 0 a score=3321.000000 s hg38.chr17_JH159146v1_alt 247292 1 + 278131 G s panTro4.chr17 66368829 1 - 82630442 g i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24890730 1 - 73212453 G i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115680 1 - 81552678 G i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53224767 1 + 80904711 g i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789463 1 + 80997621 G i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794287 1 + 74645514 G i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056719 1 - 75148670 G i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944388 1 + 159171411 a i calJac3.chr5 C 0 C 0 s canFam3.chr9 39469318 1 - 61074082 g i canFam3.chr9 C 0 C 0 e mm10.chr11 99627783 1 + 122082543 I a score=534630.000000 s hg38.chr17_JH159146v1_alt 247293 151 + 278131 ------------CAGCAGCAGGGGCGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGAGGGGCGGCAGCAGCTGGAGATGCTGCAGCTAGGGTGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------GC s panTro4.chr17 66368830 184 - 82630442 ------------cagcagcaggggcggcagcagc------------------------------------------------------------tggattcacagcaagaggggcggcagcagctggagatgctgcagctggggtggcagcagTTGGGTTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGGGGCGACGGCAGCACACAGACTGGCAGCACTGGGGCTTgc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24890731 151 - 73212453 ------------cagcagcaggggtggcagcagc------------------------------------------------------------tggattcacagcagctggggcgacagcagctggagatgcagcagctggggcggcagcaggtgggctggcagcacacagactggcagcactggggcttgcagcagctggacacacagcagctggggcg---------------------------------ac i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115681 151 - 81552678 ------------CAGCAGCAGGGGCGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGAGGGGTGGCAGCTGCTGGAGATGCAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------AC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53224768 151 + 80904711 ------------cagcagcaggggcggcagcagc------------------------------------------------------------tggattcacagcaagaggggcggcagcagctggagatacagcagctggggcggcagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------AC i rheMac3.chr16 C 0 I 5829 s macFas5.chr16 52789464 151 + 80997621 ------------CAGCAGCAGGGGCGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGAGGGGCGGCAGCAGCTGGAGATGCAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAACACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------GC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794288 211 + 74645514 ------------CAGCAGCAGGGGCGGCAGCAGCTGGATTCACAGCAAGAGGGACGGCAGCAGGTGGAGATGCAGCAGCTGGGGTGGCAGCAGCTGGATTCACAGCAAGAGGGACGGCAGCAGCTGGAGATgcagcagctggggcggcagcaggtgggctggcagcacacagactggcagcactggggcctgcagcagctggacacacagcagctggggcg---------------------------------gc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056720 121 - 75148670 ------------CAGCAGCAGGGGCGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGA------------------------------GGGGCGGCAGCAAGTGGGCTGGCAGCACACAGACTGGGAACACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------GC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944389 181 + 159171411 ------------cagcagcaggggcggcagcagctggattcacagcaagaggggcggcagcagc------------------------------tggattcacagcaagaggggcggcagcagctggagatgcagcagctggggcgacagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCG---------------------------------GC i calJac3.chr5 C 0 C 0 s mm10.chr11 99627784 130 + 122082543 ------------cagcaacaggggcggcaacagg------------------------------------------------------------gg------cggcagcagggacggcagc------aggggcggcagcaggggctgcagcaa--gggct-gcagcagg------ggcggcagcaggggcggcagcagcTAGAACCACAGCAGCTGGAGCT---------------------------------AC i mm10.chr11 I 1 I 15 s canFam3.chr9 39469319 178 - 61074082 cagcaggaggggcagcaggaggggcggcagcagctagagccacaggagc---------------------------------------------tggagccacagcaggaggggcggcagcagctagagatgcagcagctgggcctgcagcagctggagccacagcagctggaactggagcaggaggggcggcagcagctagagatgcagcagctgggcct---------------------------------gc i canFam3.chr9 C 0 C 0 a score=387872.000000 s hg38.chr17_JH159146v1_alt 247444 109 + 278131 AGCAGCT------------------------------GG---------AGATG------CAGCAGCTAGGGTGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGGGGCGACAGCA s panTro4.chr17 66369014 139 - 82630442 agcagctggacacacagcagctggggcgacagcagccgg---------agatg------cagcagctagggcggcagcaggtgggctggcagcacacagactggcagcactggggcttgcagcagctggacacacagcagctggggcgatagca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24890882 109 - 73212453 agcagct------------------------------gg---------agatg------cagcagctggggcggcagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGGGGCGACAGCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115832 109 - 81552678 AGCAGCT------------------------------GG---------AGATG------CAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGACAGCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688633 124 - 80904711 agcagGT------------------------------GGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGACAGCA i rheMac3.chr16 I 14574 T 100 s macFas5.chr16 52789615 124 + 80997621 AGCAGGT------------------------------GGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCGGCAGCAGCTGGGCTGACAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794499 109 + 74645514 agcagct------------------------------gg---------agatg------cagcagctggggcggcagcaggtgggctgacagcaCACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGACGACAGCA i papAnu2.chr16 C 0 I 15 s chlSab2.chr16 10056841 124 - 75148670 AGCAGGT------------------------------GGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCTGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAACACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944570 78 + 159171411 AGCAACT------------------------------GG---------AGATG------CAGCAGCTGGGGCGGCAGCAGGT------------------------------GGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCGGCAGC- i calJac3.chr5 C 0 C 0 s mm10.chr11 99627929 109 + 122082543 AGCAGCT------------------------------GG---------AAATG------CAGCAACTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAACTGGGTCTGCAGCAGCTAGACACACAGCA i mm10.chr11 I 15 I 3 s canFam3.chr9 39469497 109 - 61074082 agcagct------------------------------gg---------agcca------cagcagctggaactggagcaggaggggcggcagcagctggacacacagcagctggggcggcagcaggtggtctggcaacaggtggggcggcagca i canFam3.chr9 C 0 C 0 a score=11236.000000 s hg38.chr17_JH159146v1_alt 247553 9 + 278131 GCTGGAGAT s panTro4.chr17 66369153 9 - 82630442 gctggagat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24890991 9 - 73212453 GCTGGAGAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115941 9 - 81552678 GCTGGAGAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53230748 9 + 80904711 gctggagat i rheMac3.chr16 I 5829 C 0 s macFas5.chr16 52789739 9 + 80997621 GGTGGTCCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794623 9 + 74645514 GGTGGTCTG i papAnu2.chr16 I 15 C 0 s canFam3.chr9 39469606 9 - 61074082 gctagagat i canFam3.chr9 C 0 C 0 e mm10.chr11 99628038 3 + 122082543 I e calJac3.chr5 112944648 0 + 159171411 C e chlSab2.chr16 10056965 0 - 75148670 C a score=293367.000000 s hg38.chr17_JH159146v1_alt 247562 91 + 278131 GCAGCATCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCAGGACACACTGTAGCTGGGGCGG s panTro4.chr17 66369162 91 - 82630442 gcagcatctggggcggcagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCAGGACACACTGTAGCTGGGGCGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24891000 91 - 73212453 GCAGTAGCTGGGATGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACTGCAGCTGGGGCGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115950 91 - 81552678 GCAGCATCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGG i nomLeu3.chr19 C 0 I 405 s rheMac3.chr16 53230757 91 + 80904711 gcagcagctggggcggcagcaggtgggctggcagcacacagactggcagcactggggtctgcagcagctggacacacagcagctggggcgg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789748 91 + 80997621 GCAGCAGGTGGTCTGGCAGCAGCTGGGCTGACAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794632 91 + 74645514 ACAGCAGCTGGGGCGGCAGCAGATGGGTTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGACGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65101153 91 + 75148670 GCAGCAGCTGGGGCGGCAGCAGGTGGGTTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGA i chlSab2.chr16 I 38076 C 0 s calJac3.chr5 112944648 52 + 159171411 --------------------AGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGG------------------- i calJac3.chr5 C 0 C 0 s mm10.chr11 99628041 37 + 122082543 ------------------------------------------------------GGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGG i mm10.chr11 I 3 C 0 s canFam3.chr9 39469615 91 - 61074082 gcagcagctgggcctgcagcagctggagccacagcagctggaaccggagcaggaggggcggcagcagCTGGACACACAGCAGCTGGGGCGG i canFam3.chr9 C 0 C 0 a score=2395.000000 s hg38.chr17_JH159146v1_alt 247653 1 + 278131 T s panTro4.chr17 66369253 1 - 82630442 T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24891091 1 - 73212453 C i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48116446 1 - 81552678 C i nomLeu3.chr19 I 405 C 0 s rheMac3.chr16 53230848 1 + 80904711 c i rheMac3.chr16 C 0 T 5930 s macFas5.chr16 52789839 1 + 80997621 C i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794723 1 + 74645514 C i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65101244 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s mm10.chr11 99628078 1 + 122082543 C i mm10.chr11 C 0 C 0 s canFam3.chr9 39469706 1 - 61074082 C i canFam3.chr9 C 0 C 0 e calJac3.chr5 112944700 0 + 159171411 C a score=21010.000000 s hg38.chr17_JH159146v1_alt 247654 4 + 278131 AGCA s panTro4.chr17 66369254 4 - 82630442 AGCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24891092 4 - 73212453 AGCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48116447 4 - 81552678 AGCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53224919 4 + 80904711 AGCA i rheMac3.chr16 T 5930 C 0 s macFas5.chr16 52789840 4 + 80997621 AGCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794724 4 + 74645514 AGCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65101245 4 + 75148670 AGCA i chlSab2.chr16 C 0 T 267 s calJac3.chr5 112944700 4 + 159171411 AGCA i calJac3.chr5 C 0 C 0 s mm10.chr11 99628079 4 + 122082543 AGCA i mm10.chr11 C 0 C 0 s canFam3.chr9 39469707 4 - 61074082 AGCA i canFam3.chr9 C 0 C 0 a score=172718.000000 s hg38.chr17_JH159146v1_alt 247658 40 + 278131 GGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCAG s panTro4.chr17 66369258 40 - 82630442 GGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24891096 40 - 73212453 GATGGTCCTGCAGCAGGTGGTCTGGCAGCAGCTGGGGCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48116451 40 - 81552678 GGTGGTCCTGCAACAGGTGGTCTCACAGCAGCTGGGATGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53224923 40 + 80904711 CGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGTCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789844 40 + 80997621 CGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGTCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794728 40 + 74645514 CGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056965 40 - 75148670 GGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46241223 40 - 159171411 ggtggtcctgcagcaggtggtccgacagcagctggggcgg i calJac3.chr5 I 15797 T 55 s mm10.chr11 99628083 36 + 122082543 GGTGGTCCTACAGCAGGTGGTCTGGCAGCAGCTGGG---- i mm10.chr11 C 0 C 0 s canFam3.chr9 39469711 40 - 61074082 GGTGGTCCTGCAGCAGGTGGTCTGGCAGCAGGAGGGGCGG i canFam3.chr9 C 0 C 0 a score=449430.000000 s hg38.chr17_JH159146v1_alt 247698 108 + 278131 CAGCAGGTCTCCTGGCAGAGGTCTTGGCCACAGCCTTGGTCAGAGCACACGGAGCCACAACAGGAGTTGACCATTGGTGTCAGAGGGTGAAGGATCTATTTGGGTTTC s panTro4.chr17 66369298 107 - 82630442 CAGCAGGTCTCCTGGCAGAGGTCTTGGCCACAGCCTTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTATTTGGGTTTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24891136 107 - 73212453 CAGCAGGTCTCTTGGCAGAGGTTTTGGCCACAGCCTTGGTCAGAGCATACGGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTTTTTGGGTTTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48116491 107 - 81552678 CAGCAGGTCTCCTGGCAGAGGTCTTGGCCACAGCCTTGGTCAGAGCACACGGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTAGTTGGGTTTC i nomLeu3.chr19 C 0 M 263 s rheMac3.chr16 53224963 107 + 80904711 CAGCAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTACTTGGGTTTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789884 107 + 80997621 CAGCAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTACTTGGGTTTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794768 107 + 74645514 CAGCAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTACTTGGGTTTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057005 107 - 75148670 CAGCAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAACACACAGAGCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGAAGGATCTACTTGGACTTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944704 107 + 159171411 CAGCAGGTCTCCTGGCAGAGGTCTTGGCCGCAGCCCTGGTCAGAGCACACGGAGCCACAACAGGAATTGACCA-TGTTGTCAGAAGGTGGAGGATCTGAGTGGGTTTC i calJac3.chr5 C 0 C 0 s mm10.chr11 99628119 95 + 122082543 -----------CTGGCAGCAGCCTTGGCCACAGCTCTCCTCAGAGCAGACAGAGCCACAACAAGAGTTGACCA-TTGTGTCAGA-GGTGGAGATTCTGGGTGGGTTTC i mm10.chr11 C 0 C 0 s canFam3.chr9 39469751 95 - 61074082 CAGCAGGTCTCC------------TGGCCACAGCCCTGGTCAGAGCAGACCGATCCACAACAGGAGTTGACCA-TGGTGTCAGAGGGTGGGGGCTCTGGGTGGGTTTC i canFam3.chr9 C 0 C 0 a score=797592.000000 s hg38.chr17_JH159146v1_alt 247806 236 + 278131 CAAGAGAGTAAAGTTCTTGAGTTTGGAAGTTTCCTGGGTC-CATAGCC-CC-TTTATACCCGCCTGAAGGC--------CCGTTGCCACCACGTCATTATTTCCTTGTTATTATTTA-CCTAC-TGAAAAAATTAATCATGT----------AATTACATCATTGT-GTGTTTCTAGTTAAATACTCCAAAACAGAGAAAATAACTCATTTTC-TTTTCCTGCTGTGCTCCTGTGTTTCCATTGGAAATGCTTGTCATATT s panTro4.chr17 66369405 236 - 82630442 CAAGAGAGTAAAGTTCTTGAGTTTGGCAGTCTCCTGGGTC-CATAGCC-CC-TTTATACCCTCCTGAAGGC--------CCGTTGCCACCACGTCATTATTTCCTTGTTAATATTTA-CCTAC-TGAAAAAATTAATCATGT----------AATTACATCATTGT-GTGTTTCTAGTTAAGTACTCCAAAACAGAGAAAATAACTCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCCATTGGAAATGCTTGTCATATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24891243 236 - 73212453 CAAGAGAGTGAAGTTCTTGAGTTTGGAAGTCTCCTGGGTC-CATAGCC-CC-TTTATACCCTCCTGAAGGC--------CCATTGCCACCACGTCATTATTTCCTTGTTATTATTTA-CCTAC-TGGAAAACTTAATCATGT----------GATTACAACATTGT-GTGTTTCCAGTTAAATACTCCAAAACAGAGAAAATAACTCATTTCC-TTTTCCTGCTGTGCTCGTGTGTTTCCATTGGAAATGCTTGTCATATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 33444903 237 + 81552678 CAAGAGAGTGAAGTTCTTGGGTTTGGAGGTCTTCTGGGTC-CATAGCCTCC-TTTATACCCTGCTGAAGGC--------CCATTGCCATCACGTCATTATTTCCTTGTTATTATTTA-CCACG-TGGAAAACTTAATCATGT----------AATTACATAATTGT-GTGTTTCTAGTTAAATACTCCAAATGAGAGAAAATAACCCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCTATTGGAAATGCTTGTCATATT i nomLeu3.chr19 T 54493 C 0 s rheMac3.chr16 53225070 236 + 80904711 CAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGTC-CATATCC-CC-TTTATACCCTCCTGAAGGC--------CCATTGCCACCACGTCATTATTTCCTTGTTATTATTTA-CCTGC-TGGAAAAATTCATCATGT----------AATTACATAATTGT-GTGTGTCTAGTTAAATACTCCAAAACTGAGAAAATAACCCATTTCC-TTTTCCTGCTGTGCTCCTGCATTTCCTTTGGAAATGCTCGTCATATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789991 236 + 80997621 CAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGTC-CATATCC-CC-TTTATACCCTCCTGAAGGC--------CCATTGCCACCACGTCATTATTTCCTTGTTATTATTTA-CCTGC-TGGAAAAATTCATCATGT----------AATTACATAATTGT-GTGTGTCTAGTTAAATACTCCAAAACTGAGAAAATAACCCATTTCC-TTTTCCTGCTGTGCTCCTGCGTTTCCTTTGGAAATGCTCGTCATATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794875 236 + 74645514 CAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGTC-CATATCC-CC-TTTATACCCTCCTGAAGGC--------TCATTGCCACCATGTCATTATTTCCTTGTTATTATTTA-CCTGC-TGGAAAAATTCATCATGT----------AATTACATAATTGT-GTGTGTCTAGTTAAATActccaaaactgagaaaataaccCATTTCC-TTTTCCTGCTGTGCTCCTGCATTTCCTTTGGAAATGCTCGTCATATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057112 236 - 75148670 CAAGATAGTGAAATTCTTGTGTTTGGAAGTCTCCTGGGTC-CATATCC-CC-TTTATACCCTCCTGAAGGC--------CCATTGCCACCACGTCATTATATCCTTGTTATTATTTA-CCTGC-TGGAAAAATTCATCATGT----------AATTACATAATTGT-GTGTGTCTAGTTAAATACTCCAAAACTGAGAAAATAACCCATTTCC-TTTTCCTGCTGTACTCCTGGGTTTCCTCTGGAAATGCTTGTCATATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944811 235 + 159171411 CAGGAGAGTGAAGTTCTTGGGTTTGGAAGTCTTCTGGGCC-TATGACC-CCTTTTATACCCTGCTGAAGTC--------CCATTGCCACCACGTCATTTTTT--TTGTTATTATTTA-CCTGC-TGGAAAGCTTAATCATGT----------AATTACATAATTGT-GTGTTTCTGGTTAAATACTTCAAAACAGA-AAAATAACACATTTCCTTTTTCCTGCTGTGCTTCTGTGTTTTCATTGGAAAAGCTTGTCATATT i calJac3.chr5 C 0 I 160 s mm10.chr11 99628214 238 + 122082543 TGAGAGAGTGAAGATGTTGGGTTTGGAAGTCTCCTTGCCC-CACGCCC-CCTTTTATACCTCGCTGAACAC--------CTCATATGACTACATCATTATTTCCTTGTTAGTATTTT-CCTTCTTGGAAAAGTTAATTATTT----------AATTACATAATTGTAATGTTTCTAGTTAAATACTCCAAAAGAAAGAAAACATGACATTTCT-TTTTCCTGATG-GCTCCTGTGTTTGCAACTGAAACACTGTTCGCATT i mm10.chr11 C 0 I 1 s canFam3.chr9 39469846 216 - 61074082 CAGAAGAATGAAGTTCTCAAGTGTG---ATCTCCCCTGCCATCTGTCA-CT-TTTATACCCTGCTGAGGGCCACTAGGACCATGGGCAGGACAAC-------TCTTCTTGTTGTTTATCCTAA-TAGAAA-----ATCATGTAGTTTTAGTAAATTAGATAATTAT-GTTTATCTGG-TAAATATACCTATATATAGAAAAGGCTCCATTTCC-TTCTCCTGTTGTA-TTGTGAGCTA----------------------- i canFam3.chr9 C 0 C 0 a score=81287.000000 s hg38.chr17_JH159146v1_alt 248042 31 + 278131 TCTTCCTTGGTG---------GGGGTCACC---------TTTGTCCCTG s panTro4.chr17 66369641 31 - 82630442 TCTTCCTTGGTG---------GCGGTCACC---------TTTGTCCCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24891479 31 - 73212453 TCTTCCTTGGTG---------GGCGTCACC---------TTTGTCCCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 33445140 31 + 81552678 TCTTCCTTAGTG---------GGGGTCACC---------TTTGTCCCTG i nomLeu3.chr19 C 0 T 372 s rheMac3.chr16 53225306 32 + 80904711 TCTTCCTTAGTGA--------GGGGTCACC---------TTTGTCCCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52790227 32 + 80997621 TCTTCCTTAGTGA--------GGGGTCACC---------TTTGTCCCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795111 32 + 74645514 TCTTCCTTAGTGA--------GGGGTCACC---------TTTGTCCCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057348 32 - 75148670 TCTTCCTTAGTGG--------GGGGTCACC---------TTTGTCCCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945206 31 + 159171411 tcttccttagtc---------AGTGTCACC---------TTTGTCCCTG i calJac3.chr5 I 160 C 0 s mm10.chr11 99628453 22 + 122082543 TTTTCCATAGTG-----------GGTCACC---------TGT------- i mm10.chr11 I 1 C 0 s canFam3.chr9 39470062 48 - 61074082 TCTGATTTGGTTAAAACCAAGTGAATCAGCTTCCATATTTTTTTCCTT- i canFam3.chr9 C 0 C 0 a score=1190405.000000 s hg38.chr17_JH159146v1_alt 248073 380 + 278131 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGGACTCTC---TGACATTTTG-TTTTTAAAT-------ATGACTCTCCCTCCTACCTGTAGATTGCTGTCTGCAAAT-AATGGGGGACGATTTTTAT-AATGTGAATGTATCTTTCATTGTCAAAGAACGTCCTGGTCAGGTGAAATGTTGGGAAGGAATTAGAAGGAAGGACTCATTTGTG-GAAG-----------GATCTCCCATCTGTAATGAGGATGACTCTGATCCCGTGTGTGCATCTCG-GATGGTCGGGCAGATG-GTCAGATCCCAA-CAAGTT--CTAAACTCTTTGTC----AGATCTTATTCCACAGCCTCCAGCAAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG s panTro4.chr17 66369672 380 - 82630442 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGGACTCTC---TGACATTTTG-TTTTTAAAT-------ATGACTCTCCCTCCTACCTGTAGATTACTGTCTGCAAAT-CATGGGGGATGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATGTCCTGGTCAGGTGAAATGTTGGGAAGGAATTAGAAGGAAGGACTCATTTGGG-GAAG-----------GATGTCCCATCTGTAATGAGGATGACTCTGATCCCGTGTGTGCATCTCG-GATGTTCGGGCAGATG-GTCAGACCCCAA-CAAGTT--CTAAACTCTTTGTC----AGATCTTATTCCACAGCCTCCAGCAAAAGTACTTAC-CCATCACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24891510 378 - 73212453 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGGACTCTC---TGACATTTTG-TTTTTAAAT-------GTGACTCTCCCTCCTACCTGTAGATTGCTGTCTGCAAAT-CATGGGAGACGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATGTCCTGGTCAGGTGAAATGTTGGAAAGGAATTAAAAGGGAGGACTCATTTGGG-GAAG-----------GACGTCCCATCTGTAATGAGGGTGACTCTGATCCCGTGTGTGCATCTTG-GGTGGTCGGGCAGATG-GTCAGATCCCAA-CAAGTT--CTACACTC--TGTC----AGATCTTATTCCACAGCCTCCAGGAAAAGTACTTAC-CCATGACTC-ACTGCCTTTAATGGGTAAAAACACA-TTTTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48116862 378 - 81552678 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGGACTCTC---TGACATTTTG-TTTTTAATT-------GTGACTCTCCCTCCTACCTGTAGATTGCTGTCTGCAAAT-CATGGGGGACAAAATTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATGTCCTGGTCAGGTGAAATGTTGTGAAGGAATTAGAAGGAAGCACTCATTTGGG-GAAG-----------GATGTCCCATCTGTAATGAGGATGACTCTGATCCCGTGTGTGCATCTCA-GATGGTCGGGCAGATG-GTCAGATCCCAA-CAAGTT--CTAAACTC--TGTC----AGATCTTATTCCACAGCCTCCAGCAAAAATACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG i nomLeu3.chr19 M 263 C 0 s rheMac3.chr16 53225338 387 + 80904711 GTCTATGCTGTGTCTTTTACAAAGCACCTTTTACTGGTCACAGGACTTTC---TGACATTTTG-TTTTTAATT-------GTGACTCTCCCTCCTACCTGTCGATTGCTGTCTGCAAAT-CATGGGGGACGATTTTTAT-AATGTGAATGTATCTTGTGTTGTCCAAGAATGTCCTGGTCAGGTGAAATGTTGGAAAGGGATTAGAAGGTAGGACTCATCTGGG-GAAG-----------GAAGTCCCATCTGTAATGAAGATGACTCTGATCCCGTGTGTGCATCTTG-GATGGTGGGGTAGATG-GTCAGATTCCAA-CAAGTT--CTAAATTCTTTGTC----AGATCTTATTCCACAGCCTCCAGCGAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52790259 387 + 80997621 GTCTATGCTGTGTCTTTTACAAAGCACCTTTTACTGGTCACAGGACTTTC---TGACATTTTG-TTTTTAATT-------GTGACTCTCCCTCCTACCTGTCGATTGCTGTCTGCAAAT-CATGGGGGACGATTTTTAT-AATGTGAATGTATCTTGTGTTGTCCAAGAATGTCCTGGTCAGGTGAAATGTTGGAAAGGGATTAGAAGGTAGGACTCATCTGGG-GAAG-----------GAAGTCCCATCTGTAATGAAGATGACTCTGATCCCGTGTGTGCATCTTG-GATGGTGGGGTAGATG-GTCAGATTCCAA-CAAGTT--CTAAATTCTTTGTC----AGATCTTATTCCACAGCCTCCAGCGAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795143 387 + 74645514 GTCTATGCTGTGTCTTTTACAAAGCATCTTTTACTGGTCACAGAACTCtc---tgacattttg-tttttaatt-------gtgacTCTCCCTCCTACCTGTCGATTGCTGTCTGCAAAT-CATGGGGGACGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCCAAGAATGTCCTGGTCAGGTGAAATGTTGGAAAGGGATTAGAAGGTAGGACTCATCTGGG-GAAG-----------GAAGTCCCATCTGTAATGAAGATGACTCTGATCCCGTGTGTGCATCTTG-GATGGTGGGGTAGATG-GTCAGATTCCAA-CAAGTT--CTAAATTCTTTGTC----AGATCTTATTCCACAGCCTCCAGCGAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057380 387 - 75148670 GTCTATGCTGTGTCTTTTACAAAGCGTCTTTTACTTGTCACAGGACTCTC---TGACATTTTG-TTTTTAACT-------GTGACTTTCCCTCCTACCTGTCGATCGCTGTCTGCAAAT-CATGGGGGACGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCCAAGAATGTCCTGGTCAGGTGAAATATTGGAAAGGGATTAGAAGGTAGGACTCATCTGGG-GAAG-----------GAAGTCCCATCTGTAATGAGGATGACTCTAATCCCGTGTGTGCATCTCG-GAGGGTGGGGTAGATG-GTCAGATCCCAA-CAAGTT--CTAAACTCTTTGTC----AGATCTTATTCCACAGCCTCCAGTGAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACACA-TTTTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945237 382 + 159171411 GCCTATGCAGTGTCTTTTACAAAGT-------GCTGGTCACACGAGTCTC---TGACTTTTTT-AAAAAAAAT-------GTGACTCTCCCTCCTACCTGTAGGTTGCTCTCTGCAAAT-CATGGGGTACAATTTTTAT-AATACAGATGTATCTTTTGTTGTCAAAGAATGTCTTGGTCAGGTGAAACATTGGAAAGGAATTAGAAGGAAGGATTCATTTGGGAGAGG-----------GATGTCCCATCTGTAATAAGGGTGATTCTGATTCCATATGTGCATCTTG-GATGGCCTGGGAAATG-GTCAGATCCCAAGGAATTT--CTGAACTCTGTGTC----AGATCTTATTCCACAGCCTCCAGTGAAAGTACTTAC-CCATGACTC-ACTGCCTTTAAAGGGTAAAAACATA-TTTCG i calJac3.chr5 C 0 C 0 s mm10.chr11 99628475 357 + 122082543 --------------TGCTACAAGTA-------ACTTGTCACAGGACTCTC---TGGCATTTTGTTTTTTAAAC-------GTGGCATTCCCTTCCATCCGTACATTCCT---TGAAAAT-CATAGAAATGCTCTTCCACAAATTCCAGTATGCCTTTTGCTATCAAGGAGTGTTCCTCCCAGGTGAGA---TTAGAAGGAGTTAGAAGGAAAGGC-CATTTAGA-AGGA-----------GACTGTCCATCTTTCATGAGAATGATGGTGATTTTGTGTGTCCA--TTA-GAGGATCTGGGAAATG-TGCAGACCTGAG-AACATT--CTAAAT----TATC----AGATCTCATTCCAGTCTCTTAAGTCGAAGAGCTTGG-CAGTGGTGCAACTACCTAGAAATAATAGAAACTCAGTTTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39470110 382 - 61074082 GTCTG----ATGTGTCTTCCAAAGT-------AC----------ACTCTCCTATGACATTATT-TCTTTGGATTTTACAAGTGTTAAATCCTCATTTATGTATTTAACTCCAGGATAATATGTTGAGAATGGATTTTAT-G--TCAACTAAATCTTCTA--GCCAAGAGGTTAACAAGTCATATGAAAGGCTGGTAGGAAAATAGGGTGAAAGAGCCATCTTGG-GGGGCGGGGGCGGGCAATCACTTATGTTCAGTGGGGAATACTGTGATTCC---TTTGGATTTTATGATGGTCAGTGAGGTATAAAAAATCCTAG-CAAAGTACCTATCTCTTTTGTCTTATTGAATCTATTCGATT--------TGAAAGTTATAATGTAATGATTC-ACTACTTTTACACAGTAAAAAAACT-CATTG i canFam3.chr9 C 0 I 10432 a score=146049.000000 s hg38.chr17_JH159146v1_alt 248453 53 + 278131 CTGTATTTCTTACAGTATAGGCATTAAGAGTAGGAAGTTTTGAtttatctttt--- s panTro4.chr17 66370052 50 - 82630442 CTGTATTTCTTACAGTATAGGCATTAAGAGTAGGAAGTTTTGAtttatc---t--- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24891888 51 - 73212453 CTGTATGTCTTACAGTATAGGCATTAAGAGTTGGAAGTTTTGAtttatc--tt--- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48117240 49 - 81552678 CTGTATGTCTTACAGTATATGCATTATGAGTAGGAAGttttgatttact------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53225725 50 + 80904711 CTGTATGTCTTACAGTATAGGCATTAAGAGTAGGAAGTTTTTATTTACC---t--- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52790646 50 + 80997621 CTGTATGTCTTACAGTATAGGCATTAAGAGTAGGAAGTTTTTATTTACC---T--- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795530 50 + 74645514 CTGTATGTCTTACAGTATAGGCATTAAGAGTAGGAagtttttatttacc---t--- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057767 50 - 75148670 CTGTATGTCTTACAGTGTAGGTATTAAGTGTAGGAAGTTTTGATTTACC---t--- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945619 50 + 159171411 CTGTATGTCCTATAGTATAGGCATTAAGCATAGGGAGTTTTGAtttatt---t--- i calJac3.chr5 C 0 C 0 s mm10.chr11 99628832 53 + 122082543 TTGTATGTCTTTCTGAAGAACGATTAAGAGTGGGGAAATTTTATTCATC---TTTT i mm10.chr11 C 0 I 1007 e canFam3.chr9 39470492 10432 - 61074082 I a score=1011153.000000 s hg38.chr17_JH159146v1_alt 248506 379 + 278131 tttttttttt----------------------------tttctgacggggtctccctctgtcac-caggctggagtacagtggcatgatctcggctcactgcaacttccacctcctgggttcaagcagttccttttcctcagccttccgagtagctgggactacaggtgtgtgccaccacacccagcttacttttgtatttttagtagagacagggtttcaccatgttggccaagatggtattgatctcttgacctcatgatccacccgcctttgcttcccaaagtgttgggattgcaggcgtg--------agcccccaacacccagccTGATTAATCTTTGATCATCAAAATTGCGTGATGCATTTTTCATTTACAAAAGCATTTGTTATATATGAAGAATATTTAGAATTATT s panTro4.chr17 66370102 379 - 82630442 ttttttttct----------------------------tttctgacagagtctccctctgtcac-ctggctggagtacagtggcatgatctcggctcactgcaacttccacctcctgggttcaagcagttcctcttcctcagccttccgagtagctgggactacaggtgtacgccaccacacccagcttacttttgtatttttagtagagacagggtttcaccatgttggccaagatggtcttgatctcttgacctcatgatccacctgcctttgcttcccaaagtgttgggattgcaggcgtg--------agccaccaacacccagccTGATTAATCTTTGATCATCAAAATTGCGTGATGCATTTTTCATTTACAAAAGCATTTGTTATATATGAAGAATATTTAGAATTATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24891939 387 - 73212453 tttttttttt----------------------------tttttgacagagtctcgctctgtcac-caggctggagtacagtggcatgatcttggctcaatgcaacttccacctcctgggttcgagcgtttcttcttcataagcctcccgagtagctgggactacaggtgtgcgccaccacacccagcttacttttgtatttttagtagagacagggtttcaccatgttggccaagatggtctcgatctcttgacctcgtgatccacccacctttgcttccgaaagtgttgggattgcaggcttgagccaccTAGCCACCGACACCCAGCCTGATTAATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATTTGTTATATATGAAGAATATTTAGAATTATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48117289 377 - 81552678 -ttttttttt----------------------------tttttgacagattctcaatctgtagc-caggctggagtacagtggcatgatctcggctcactgcaacctccacctcctgggttcaagcaattcttctgcctcagcctcccgagtagctgggactacaggtgtgcaccaccacacccagcttacttttgtatttttagtagagacagggtttcaccacattggccaagttggtctcgatttcttgatcccgtgattcacccaccttggcttcccaaagtgttgggattgcaggcatg--------agccactg-cacccagccTGGTTAATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATATGTTATATACGAAGAATATTTAGAATTATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53225775 395 + 80904711 tttctttttgtttttttttttgtttttttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagccttcctagtaactgggactacaggtgtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcccgccttggcctcccaaagtgttgggattacaggcgtg--------agccaccg-tgcccagccTGATTAATCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACAAAAGCATTTGTTATATATAAAGAATATTTAGAATTATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52790696 392 + 80997621 TTTCTTTTTG---ttttttttgtttgtttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagccttcctagtaactgggactacaggtgtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcccgccttggcctcccaaagtgttgggattgcaggcgtg--------agccaccg-tgcccagccTGATTAATCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACAAAAGCATTTGTTATATATAAAGAATATTTAGAATTATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795580 387 + 74645514 tttctttttg--------tttgtttgtttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccgcctcctgggttcaagtgattcttctgcctcagccttcctagtaactgggactacaggtgtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcctgccttggcctcccaaagtgttgggattgcaggcatg--------agccaccg-tgcccagcctgattaaTCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACAAAAGCATTtgttatatataaagaatatttagAATTATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057817 367 - 75148670 tttttttttg----------------------------tttttgacagagtctcact------------ctggagtatagtggcatgatttcggctcactgcagcctccacctcctgggttcaagtgattcttctgcctcagccttccgagtagctgggactgcaggtatgtgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgctggccaagatggtctggatcttttgacctcatgatccacccgccttgacttcccaaagtgttgggattgcaggcgtg--------agccaccg-tgcccagccTGATTAATCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACACAAGCATTTGTTATATATAAAGAATATTTAGAATTATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945669 379 + 159171411 atttatttac----------------------------tttgagatggagtctcgctctgtcacacaggctggagtgcagtggcacaatctctgctcaatgcagtctctgcctcctgggttcaagcaattctcctgcctcagtctcctgagtagctgggactacaggcacatgccaccacgcccagctagtttttgtatttttagtagagatggggtttcaccatgttggccaggacagtctcgatctcttgacttcatgatctttcctcctcagcctcccaaagtgctgggattacaggcatg--------agccactg-cacctggccTGATTTATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTGCAAAAGTATTTGTTGTATATAAACAATATTCAGAATTATT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99628885 1007 + 122082543 I a score=899481.000000 s hg38.chr17_JH159146v1_alt 248885 304 + 278131 AAGCCTTCAATAACATGCATCCAAGATGTTCTATTGGGTACTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAGGTACTTGCATAAGACACATGGATAGGAAAC--AGTTTGGCAGAACTGAAAAGAATTA---------CAATTATTTTCATTAAACAACTAAAATAAAAAATGTATAATATGTGGATAAGTTCCATACACCCTCATGGTATGTATATTacttgtgaagtattgactatgtagcaggcattgt--------------------------------------------accaaatatc------ttacatttgtttcattttcacactttaatacaaccttatgaac s panTro4.chr17 66370481 304 - 82630442 AAGCCTTCAATAACATGCATCCAAGATGTTCTGTTGGGTACTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAGGTACTTGCATAAGACACATGGATAGGAAAC--AGTTTGGCAGAAATGAAAAGAATTA---------CAATTATTTTCATTAAACAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTacttgtgaagtattgactatgtagcaggcattgt--------------------------------------------accaaatatc------ttacatttgtttcattttcacactttaatacaaccttatgaac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24892326 302 - 73212453 AAGCCTTCAATAACATGCATCCAAGACATTCTATTGGGTACTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGTAGGTACTTGCATAAGACA----GATAGCAAACAGAGTTTGGCAGAAATGAAAAGAATTA---------CAATTATTTTCATTAAACAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCTTACACCGTCAGGGTATGTATACTacttgtgaagtattgactatgtagcaggcattgt--------------------------------------------accaaatatc------ttacatttgtttcattttcacgctttaatacaaccttatgaac i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48117666 306 - 81552678 AAGCCTTCAATAACATGCATCCAAGACGTTCTATTGGGTATTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAAGTACTGTCATAAGACACATGGATAGCAAACAGAGTTCAGCAGAAATGAAAAGAATTA---------CAATTATTTTCATTAAACAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATGTTacttgtgaagtattgactatgtagcgggcattgt--------------------------------------------accaaatatc------ttatatttgtttcattttcgcactttaatataaccttatgaac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53226170 306 + 80904711 AAGGCTTCAATAACATGCATCCAAGATGTTCTACTGGGTACTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACACTTAGATAGGAAACAGAGTTCAGCAGAAATGAGAAGAATTA---------CAATTATTTTCATTAAATAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTATGTAGGAGGCATTGT--------------------------------------------ATCAAATATC------TTATATCTGTTTCATTTTCACGCTTGAATACGACCTTATGAAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52791088 306 + 80997621 AAGGCTTCAATAACATGCATCCAAGATGTTCTACTGGGTACTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACACTTAGATAGGAAACAGAGTTCAGCAGAAATGAGAAGAATTA---------CAATTATTTTCATTAAATAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTACGTAGGAGGCATTGT--------------------------------------------ATCAAATATC------TTATATCTGTTTCATTTTCACGCTTGAATACGACCTTATGAAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795967 306 + 74645514 AAGGCTTCAATAACATGCATCCAAGATGTTCTACTGGGTACTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACACTTAGATAGGAAACAGAGTTcagcagaaatgaaaagaatta---------caattattttcattaaataactaaaataaaaaatgtatagtaTGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTACGTAGGAGGCATTGT--------------------------------------------ATCAAATATc------ttatatttgtttcattttcatgctTGAATACGACCTTATGAAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10058184 289 - 75148670 AAGCCTTCAATAACATGCATCCAAGATGTTCTACTGGGTATTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACACTTGGAT-----------------AGAAATGAAAAGAATTA---------CAACTATTTTCATTAAATAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTATGTAGGAGGCATTGT--------------------------------------------ATCAAATATC------TTATATTTGTTTCATTTTCACACTTTAATATGACCTTATGAAC i chlSab2.chr16 C 0 I 583 s calJac3.chr5 112946048 296 + 159171411 AGGTCTTCAATAACATGCATCGAAGATGTTTTACTGGGTACTCCGGGTGTAGAACAGATAAATCCTCATCTATTTCTTGCAGGTACTTGAATAAGACACATGCATAGGAAAC--AGTTTGACaaaaataaaaataatta---------caattatttttattaaaCCACTAAAAT-GAAATTGTATAGTATGTGGATAAGTTCCATACACCTTCAGTGTATGTATATTacttgtgaagtattgacta--taccaggcattgt--------------------------------------------gccaaatatt------tt-----tgtttcattttcaatctttaatacaaccttatgaag i calJac3.chr5 C 0 C 0 s mm10.chr11 99629892 345 + 122082543 aagaCTTTGGCAATATATATGAAAGAGTTTTTGCTGACTGTTCTTAGCACAGAACAAGT-AGCCCTTACTCCTTTC-TGTGAGTGGTTGGATAGGACACAGGCAGAGGGAAG--CATTTGGCACAAG-ATTAAGACTTAATCTTAATGCAATGACTTAAATGAAGCAACTAAAAT-CAAAATATGCAGTATATGAATGTGTCCCATGTACTCTTGGTGGGAGTGTAGT--TTGTAAAATGTC-CCTACATATTAGACACTGTGTGGGTTGTGTCTAGGGGGAATAAATTGTAAAGTGTCACCATGAATCAAACATTGTGTGATTATATTTTTTCTGTTTTTA---------ACAGTTCTATGA-- i mm10.chr11 I 1007 C 0 e canFam3.chr9 39470492 10432 - 61074082 I a score=152533.000000 s hg38.chr17_JH159146v1_alt 249189 49 + 278131 tagtttatattcttattagtcttttaggggaatactcaaaagaagcatt s panTro4.chr17 66370785 49 - 82630442 tagtttatattcgtattagtcttttagaggaatactcaaaagaagcatt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24892628 49 - 73212453 tagtttatattcttattagtcttttaggggaatactcaaaataagcatt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48117972 49 - 81552678 tagtttatattcttattagtcttttaagggaatactcaaaagaagcatt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53226476 49 + 80904711 TAGTTTATATTCTTATTAGTCTTTTAGGGGGATAGTCAAAAGAAGCATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52791394 49 + 80997621 TAGTTTATATTCTTATTAGTCTTTTAGGGGGATAGTCAAAAGAAGCATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796273 49 + 74645514 TAGTTTATATTCTTATTAGTCTTTTAGGGGAATAGTCAAAAGAAGCATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10059056 49 - 75148670 tagTTTATATTCTTATTAGTCTTTTAGGGGAATAGTCAAAAAAAGAATT i chlSab2.chr16 I 583 C 0 s calJac3.chr5 112946344 49 + 159171411 tagtgtatattcttattactcttttattggaatactcaaaagaagcatt i calJac3.chr5 C 0 I 5953 s mm10.chr11 99630237 44 + 122082543 -AGTCTA----CTCATTCTTCTTTTGATAGAGGAGCTTAAAGAAGCACA i mm10.chr11 C 0 C 0 e canFam3.chr9 39470492 10432 - 61074082 I a score=1386991.000000 s hg38.chr17_JH159146v1_alt 249238 476 + 278131 aaaaacttaaaacaaacaaac--------aacttgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCCGTAAAGAATACAATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtttcatctttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgctaagctaccccattcatgtatcatgatttcctgccttgtgctcataatttgttacattctcctgtatcatagtcatttacttctgtcattccaccacgtgcaatgcaaataccctgaaggcatgggctatggcatttattcttgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaaggaaGGC--TTTTGATGACATAGAGGCATGTAAGGTCCTTT-AAAAATGTATATATCTTT s panTro4.chr17 66370834 477 - 82630442 aaaaagttaaaacaaacaaac--------aacctgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCCGTAAAGAATACAATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtttcatctttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgataagctaccccattcatgtatcatgatttcctgccttgtgctcataatttgttatattctcctgtatcatagtcatttacttctgtcattccaccacgtgcaatgcaaataccctgaaggcatgggctatggcatttattcttgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaaggaaGGC-TTTTTGATGACATAGAGGCATGTAAGGTCCTTT-AAAAATGTATATATCTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24892677 476 - 73212453 gaaaagttaaaacaaacaaa---------aacttgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCCATAAAGAATAAAATTTACTAAGCTTGCTGAAActgcttcatcttcttggaatgtttcatctttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatagttcctcctcaataatatctttcctgataagctaccccattcatttatcatgatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttacttctgttattccaccacgtgcaatgcaaataccctgaaggcatgggctatgacatttattcttgttaccatgatactcagcacagagaacactggtggtaagtgtttgttgagtgaaggaaGGC-TTTTTGATGACAAAGAGGCATGTAAGGTCCTTT-AAAACTGTATATATCTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48118021 486 - 81552678 aaaaagttaaaacaaacaaacaaacaaaaaacttgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCGGTAAAGAATAACATTTGCTAAGCttgctaaaactgcttcatcttcttggaatgtttcatc-ttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgataagctaccccattcatgtatcatgatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttacttctgtcgttccaccacgtgcaatgcaaataccctgaaggcataggctatggcatttattcttgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaatgaaGGCTTTTTTGATGACATAGGGGCATGTAAGGTCCTTTAAAAAATGTATATATCTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53226525 474 + 80904711 AAAAAGTTAAAGCAAACAAACAGAA----AACTTGTCCAAGATTAAAGAGA----AAGCCTAGTATGTCTTAGTGTAGCCAAGACAGCGGTAAAGAATAAAATTTGCTAAGCttgcagaaactgttttatct--ttggaatgtttcatc-ttttttatccactctgcacactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcttgataagctaacccattcatgtatcactatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttactcctgtcattccaccatgtgcaatgcaaataccctgaagccatgggctatggcatttattcttattactatgatactcagcacagagaacactggtggtaaatgtttattgagtgaatgaaGGC-TTTTTGATGACATAGAGTCATATAAGGTCCTTT-AAAAATGTACATATCTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52791443 474 + 80997621 AAAAAGTTAAAGCAAACAAACAGAA----AACTTGTCCAAGATTAAAGAGA----AAGCCTAGTATGTCTTAGTGTAGCCAAGACAGCGGTAAAGAATAAAATTTGCTAAGCttgcagaaactgttttatct--ttggaacgtttcatc-ttttttatccactctgcacactcctactcacgtgtcaagacccagttaaaatatttcctcctcaataatatctttcttgataagctaacccattcatgtatcactatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttactcctgtcattccaccatgtgcaatgcaaataccctgaagccatgggctatggcatttattcttattactatgatactcagcacagagaacactggtggtaaatatttgttgagtgaatgaaGGC-TTTTTGATGACATAGAGTCATATAAGGTCCTTT-AAAAATGTACATATCTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796322 474 + 74645514 AAAAAgttaaagcaaacaaacagaa----aacttgtCCAAGATTAAAGAGA----AAGCCTAGTATGTCTTAGTGTAGCCAAGACAGCggtaaagaataaaatttgcTAAGCTTGCAGAAACTGTTTTATCT--TTGGAACGTTTCATC-TTTTTTATCCACTCTGCACACTCCTACTCATGTGTCAAGACTCAGTTAAAATATTTCCTCCTCAATAATATCTTTCTTGATAAGCTAACCCATTCATGTATCACTATTTCCTGCCTTGTGCTCATAATTTGATACATTCTACTGTATCATAGTCATTTACTCCTGTCATTCCACCACGTGCAATGCAAATACCCTGAAGCCATGGGCTATGGCATTTATTCTTATTACTATGATACTCAGCACAGAGAACACTggtggtaaatatttgttgagtgaatgaaggc-TTTTTGATGACATAGAGTCATATAAggtccttt-aaaaatgtacatatcttT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10059105 474 - 75148670 AAAAAGTTAAAGCAAACAAACAGAA----AACTTGTCCAAGATTAAAAAGA----AAGCCTAATATGTCTTAGTGTAGCCAAGACAGCAGTAAAGAATAAAATTTGCTAAGCTTGCTGGAActgttttatct--ttggaatgtttcatc-ttttttatccactctgcacactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcttgataagctaacccattcatgtatcattctttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttactcctgtcattccaccatgtgcaatgcaaataccctgaaggcatgggctatggcatttatttttgttaccatgatactcagcacagagaacactggtggtaaatatttgtagagtgaatgaaGGC-TTTTTGATGACATAAAGTCATATACGGTCCTTT-AAAAATGTACATATCTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112952346 478 + 159171411 AAAAAGTTAAAACAAACAAACAAA-----AACTTGTCCAAGATTAAAGTGAAAGCAAGTCTAATACGTCTTAGTGTAGCCAAGAAAGCAATAAAGAATAAAATTTGCTAAACTTTCTGAAActgttttatcttcttggaatgttttgtc-ttttttgtccactctgaaaactcctatttacgtgtcaagacccagttaacatacttcctcctcaacaatatttttcctcataagctaccccatttatgtatcattatttcctgccttgcactcataatttgatacattctactctattataatcatttacttctgtcattcctccatgggcaatgcaaataccctgaaggcgtgggctgtggcatttattcttgttaccatgagactcagcacagagggcactggtggtaaatgtttgttgagtgaatggaGGC-TTTTTGATGACATAGAGGCATGTAA-ATCCTTT-AAAATTGTATATATCTTT i calJac3.chr5 I 5953 C 0 s mm10.chr11 99630281 315 + 122082543 GAGAGGCTAAAATCAAAA-----------CATCTGCCCAAGAGGAAACACAACGTGAGCTGAACCTGCCTCTGAGTAGCAGAAGGAG-AATGAAGAATTAAGCTTGGAGCCTTTGCTGGAGGTGTTTTATCTTCTTGGAATG-------------------------------CTGCTCAGCCATCAAGGCTCAACAGAGATGTTCTTTCCTGCGTGGTGTCTGTCCTGCTAAA-TGGCCCTCTCACATGTCATGA---CCCTCCTTG---TCA--------------------------AGTGGTTT-------------------GTGGAATGGA-------TGGAGGCATAGG--------------------------------AGC----AGGGCATTG------------TATAGACTGAAGAAAAGA---------------------CATGAAGTAGTTC-AAAGGTGACTGTTTATTT i mm10.chr11 C 0 I 50 e canFam3.chr9 39470492 10432 - 61074082 I a score=281973.000000 s hg38.chr17_JH159146v1_alt 249714 92 + 278131 TGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAGATCATAATTTCATTTCAGGAAGACTAAACTAATTTACGTGGTAGGTAACA s panTro4.chr17 66371311 92 - 82630442 TGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAGATCACAATTTCATTTCAGGAAGACTAAACTAATTTACGTGGTAGGTAACA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24893153 92 - 73212453 TGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAGATCATAATTTCATTTCAGGAAGACTAAACTCATTTATGTGATAGGTAACA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48118507 92 - 81552678 TGACTTCTGGATAAAATAGAGGAAAACATTCCAAACAAAAAGATCATAATTACATTTCAGGAAGCCTAAACTCATTTATGTGGTAGGTAACA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53226999 92 + 80904711 TGACTTCTGGATAAAAGAGAGGAAAGCATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTAGGTAACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52791917 92 + 80997621 TGACTTCTGGATAAAAGAGAGGAAAGCATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTAGGTAACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796796 92 + 74645514 TGACTTCTGGATAAAAGAGAGGAAAGCATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTAGGTAACA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10059579 91 - 75148670 TGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTA-GTAACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112952824 92 + 159171411 TGACTTCTGGATAAGAGAGGGAAAAACATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAAACTACACTTATTTATGTGGTAGGTAATA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99630596 50 + 122082543 I a score=1362523.000000 s hg38.chr17_JH159146v1_alt 249806 439 + 278131 TGTCATCTGATAAATAACATATGTGGAA--AGTTGTGGAAGTTAAGATTCAATTTATAGAATGAGACTTGTTTATAGATAACCAG----GAATACAGTGTTGAACGTGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAGATGGTAGCACTGGTTCTCCTTCAC--CTCCTGACTCCCTCGTTTTACTCTTGTCGATTGAAATAACTATTATTTCCAGTTTCGTATCAGTCAGCCAAAAATGTTTGTTGATCATCTGTtgtcttaacttaaattctacccaatgcaaaccttgagaaaaatacctgggtgcacataatttatttgggggatgatcccaggaagcacaagtgaggaaatggcgaaagtaagacagaaaaggtagaaaatcccaacagtgtttgtgttaatggtaggacccccactgtgggca s panTro4.chr17 66371403 439 - 82630442 TGTCATCTGATAAATAACATATGTGGAA--AGTTGTGGAAGTTAAGATTCAATTTATAGAATGAGACTTGTTTATAGATAACCAG----GAATACAGTGTTGAACATGCATGCCTATATTTACACAAT-AAAAAGACAGGAA-GGAAGTAAATGCCAAATGGTAGCACTGGTTCTCCTTCAC--CTCCTGACTTCCTCGTTGTACTCTTGTCGATTGAAATAACTATTATTTCCAGTTTGATATCAGTCAGCCAAAAATGTTTGTTGATCATCTGTtgtcttaacttaaattctacccaatgtaaaccttgagaaaaatacctgggtgcacataatttatttgagggatgatcccaggaagcacaagtgaggaaatggcgaaagtaagacaggaaaggtagaaaatcccaacagtgtttgtgttaatggtaggacccccactgtgggca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24893245 439 - 73212453 TGTCCCCTGATAAATAACATATGTGGAA--AGTTGTGGAAGTTAAGATTCAATTTATAGAAGGAGACTTGTTTATAGATAACCAG----GAATACAGTGTTGAACATGCAAGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAAATGGTAGCACTGGTTCTCCTTCAC--CTCCTGACTTCCTCATTTTACTCTTGTTGATTGAAATAACTATTATTTCCAGTTTGATATCAGTCAGCCAAAAATGTTTGTTGATCATCTGTtgtcttaacttaaattctacccaacggaaaccttgagaaaaagacctgggtgcacataatttatttgggggatgatcccagcaagcacaagtgaggaaatggagaaagtaagacaggaaaggtagaaaatcccaagagtgtttgtgttaattgtaggacccccactgtgggca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48118599 441 - 81552678 TGTCACCTGATAAATAACATATTTGTTATTTATTGTGGAAATTAAGATTCAATTTATAGAATGAGACCTGTTTATAGATAACCAG----GAATACAGTGTTTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAAATGGTAGTACTGGTTCTCCTTCAC--CTCCTGACTTCCTCGTTTTACTCTTGTTGATTGAAATAACCATTATTTCCAGTTTGATATCAGTCAGCCAAAAATGTTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagaccggggtgcacataatttatttgggggatgatcccaggaagcacaagtgaggaaatggtgaaagtaagacaggaaaggtagaaaatcccaagagtgtttgtgttaatggtagggcccccactgtgggca i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53227091 439 + 80904711 TGTCACCTGATAAACAACCTATGTGGAA--AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAG----GACTACAGTGTTTAACATGCATTCCTATATTCACACAGT-AAAAAGACAGGAA-GGTGGTAAACACCAAATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCATTTTACTCTTATTAATTGAAATAACTATTATTTCCAGTTTGATATCAGCCAGCCAAAAATATTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgccaaccttgagaaaaagacttgagtgcacataatttatctgggggatgatcccaggaagcacaagtgaggaaatggtgaaagtaagacaggaaagatagaaaatcccaagaatgtttgtgttaatggtagggcccccactgtggaca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52792009 439 + 80997621 TGTCACCTGATAAACAACCTATGTGGAA--AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAG----GACTACAGTGTTTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGTGGTAAACACCAAATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCGTTTTACTCTTATTAATTGAAATAACTATTATTTCCAGTTTGATATCAGCCAGCCAAAAATATTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgccaaccttgagaaaaagacttgagtgcacataatttatctgggggatgatcccaggaagcacaagtgaggaaatggtgaaagtaagacaggaaagatagaaaatcccaagaatgtttgtgttaatggtagggcccccactgtgggca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796888 439 + 74645514 TGTCACCTGATAAACAACCTATGTGGAA--AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAG----GACTACAGTGTTTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAGGTAAACACCACATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCGTTTTACTCTTATTAATTGAAATAACTATTATTTCCAGTTTGATATCAGCCAgccaaaaatatttgctgatcaTCTGTTGTCTTAGCTTAAATTCTACCCAATGCCAACCTTGAGAAAAAGACTTGAGTGCACATAATTTATCTGGGGGAtgatcccaggaagcacaagTGAGGAAATGATGAAAGTAAGACAGGAAAGGTAGAAAATCCCAAGAATGTTTGTGTTAATGGTAGGGCCCCCACTGTGGGCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10059670 439 - 75148670 TGTCACCTGATAAACAACCTATGTGGAA--AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAG----GACTACAGTGTTTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAGGTAAACCTCAAATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCATTTTACTCTTATTGATTGAAATAACTATTATTTCCAGTTTGATATCAGTCAGCCAAAAATATTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagacttgggtgcacataatttatctgggggatgatcccaggaagcacaagtaaggaaatggtgacagtaagacaggaaagatagaaaatcccaagaatgtttgtgttaatggtagggcccccactgtgggca i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112952916 437 + 159171411 TGTCACCTGATAAATAAC--ATGTGGAA--AGTTGTGGAGGTTAAGATTCAATTTATAGAATGAGACTTGCTTATAAATAACCAG----GAATGCAGTGTTTAACAT-CATGCCTATATTCACACAGGAAAAAAGACAGGAA-GCAGGTAAACACCAAATGATAACACTGGTTCTCCTTCAC--TTCCTGACTTCCCAGTTTTACTTTTATTGATTGGTTTAATTATCATTGCCCATTTAATGCCAGTCAGCCAAAAATGTTTGCTGAACATCTATtgtctttgcttgaattctacccaaagcaaaccttgagaaaaagacttgagtgcacataatttaattgggtgatgaatccaggaagcacaagcgagaaaatggggaaagtaatacatgaaatttggaaaatcccaagaatgtttgtgctaatggtagggtccccactgtgggca i calJac3.chr5 C 0 C 0 s mm10.chr11 99630646 392 + 122082543 TGTCACCACATAAAGGCTATGTGCAGGA--AGCTGCAGAAA-----ACTTGATTTGCAGGGGAAGACTCGTTTACAGATGTCCATCAACAAACACACTGCTCAACTCACTTGTCTACAGCCATAGGGC---AAGGGTAGGAAGGGAGGCACTAACCAAATCATAACACCTATTTTTTTTTATTGCCCCAGACTTCCCAGTTTTACTCTTACTGCTAGGAA-AACTAT-----------------CAATTAGGCGAAAATATTT-CTGAACGTCCCCTGACTTTGCTTGAATTGTATACACTCTAGAACCTTGAACAAAGACT--------------------------CCATCCCAGAAAGTTCGAGAGAGGAAATGGGGAAAATGGTCCAAAGAGGAAGGAAAAACCCAA-AGCATTTGTATTAATGATGAGAT-TATACTGTGGGCA i mm10.chr11 I 50 I 46 e canFam3.chr9 39470492 10432 - 61074082 I a score=410741.000000 s hg38.chr17_JH159146v1_alt 250245 139 + 278131 tctggggatgaaccccggggacAGGCCTGAGGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATGAATCATGAGATCAGATAAAATATGAACTTATACTAATCT s panTro4.chr17 66371842 139 - 82630442 tctggggatgaaccccggggacAGGCCTGAGGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATGAATCATGAGATCAGATAAAATATGAACTTATACTAATCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24893684 139 - 73212453 tctggggatgaaccccggggacAGGCCTGAGGCTGGAGGCACTTGGCCACCATGACTGCACACCTGTAAAATCCTGGAGAGTCAGCTGAGTATTAGTATGAATCATGAGATCAGATAAGATATGAACTTATACTAATCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48119040 139 - 81552678 gctggggACGAACACTGGGGAAAAGCCTGAGACTGGAGGCACTTGGCCACCATGATTGCACACCTGTAAAATCCTGGAGAGTCAGCTGGGTATTAGTATGAATCATGAGATCAGATAAAATATGAACTTATACTAATCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53227530 139 + 80904711 gctggggACGAACACCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAATACAAACTTATACTAACTT i rheMac3.chr16 C 0 I 56 s macFas5.chr16 52792448 139 + 80997621 gctggggACGAACACCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAAGACAAACTTATACTAACTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47797327 139 + 74645514 GCTGGGGACGAACCCCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAATACAAACTTATACTAACTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10060109 139 - 75148670 gctcgggATGAACCCCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAATATGAACTTATACTAACCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953353 129 + 159171411 gctggggACAAACCCTGGGGACGGGCCTGAGGCTGGAGGCACTTGGCCACCAAGATTGCACA----------CTTGGAGAGTCAGCTGGGTATTAGTATTAACCATGAGACCAGATAAAACATGAATTTATACTAATCT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99631038 46 + 122082543 I a score=112878.000000 s hg38.chr17_JH159146v1_alt 250384 51 + 278131 ATAGACTTTTTATACACTAGCAATAATTGTCTCTAAAATTTAATGGAGAAA s panTro4.chr17 66371981 51 - 82630442 ATAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGGAGAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24893823 51 - 73212453 ATAGACTTTTTATACACTAGCAATAATTCTCTTTATAATTTAATGGAGAAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48119179 51 - 81552678 ATAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGgagaaa i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52792587 51 + 80997621 GTAGACTTTTTATACACTAGCAATAATTCTTTCTAAAATTTAATGGAGAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47797466 51 + 74645514 GTAGACCTTTTATACACTAGCAAtaattctttctaaaatttaatgGAGAGa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10060248 51 - 75148670 GTAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGGAGAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953482 50 + 159171411 ATAGAC-TTTTATACACTAAAAATCATTCTCTCTAAAATTTAATAGGAAAA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99631038 46 + 122082543 I e rheMac3.chr16 53227669 56 + 80904711 I a score=5733.000000 s hg38.chr17_JH159146v1_alt 250435 3 + 278131 AAT s panTro4.chr17 66372032 3 - 82630442 AAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24893874 3 - 73212453 AAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48119230 3 - 81552678 aat i nomLeu3.chr19 C 0 I 2 s macFas5.chr16 52792638 3 + 80997621 Aat i macFas5.chr16 C 0 I 2 s papAnu2.chr16 47797517 3 + 74645514 aat i papAnu2.chr16 C 0 I 2 s chlSab2.chr16 10060299 3 - 75148670 Aat i chlSab2.chr16 C 0 I 2 e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99631038 46 + 122082543 I e calJac3.chr5 112953532 0 + 159171411 C e rheMac3.chr16 53227669 56 + 80904711 I a score=391665.000000 s hg38.chr17_JH159146v1_alt 250438 180 + 278131 cacagtggggcctgtcgtggggtggggggaggagggagggatagcattaggagaaacacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaggactttaagaataat---tttaaaaaagaaC s panTro4.chr17 66372035 180 - 82630442 cacactggggcctgtcgtggggtggggggaggagggagggatagcattaggagaaatacctagtgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacattgtgcacatgtaccctaggactttaagaataat---ttaaaaaaagaaC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24893877 179 - 73212453 cacactggggcctgt-gtggggtggggggaggagggagggatagcattaggagaaatacctaatgtaaatgacgagttattgggtgcagcacaccaacatggcacatgtatacatatgtaacaaatctgcgcgttgtgcgcatgtaccctagaacttaaagaataat---ttaaaaaaagaaC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48119235 182 - 81552678 cacactggatcctgtcgtggggtgcggggagggagaagggatagcattaggagaaatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacgtatgtaacaaacctgcacgttgtgcacaggtaccctagaacttaaagtataat-aaaaaaaaaaagaAG i nomLeu3.chr19 I 2 C 0 s rheMac3.chr16 53227725 182 + 80904711 cacactggggcctattgtggagtgtggatgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataat-agaaaaaaaaagaaa i rheMac3.chr16 I 56 C 0 s macFas5.chr16 52792643 182 + 80997621 cacactggggcctattgtggagtgtggatgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataat-aaaaaaaaaaagaaa i macFas5.chr16 I 2 C 0 s papAnu2.chr16 47797522 183 + 74645514 cacactggggcctactgtgGAGTGTGGAtgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataataaaaaaaaaaaagaaa i papAnu2.chr16 I 2 C 0 s chlSab2.chr16 10060304 182 - 75148670 cacaccggggcctattgtggtgtgtgcatgtgggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttcaaatataat-aaagaaaaaaagaaa i chlSab2.chr16 I 2 C 0 e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99631038 46 + 122082543 I e calJac3.chr5 112953532 0 + 159171411 C a score=541386.000000 s hg38.chr17_JH159146v1_alt 250618 182 + 278131 AATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATGTGAAGGAAAGTGTTAATATTTCCTGAAGGACATAAAATAACGTTTGAATAAATGTCAGAACAAGAGATGTGCAACGAAAGCCAAGTTTTCAAATAAATACATACATGTGTTATGCATGCA s panTro4.chr17 66372215 182 - 82630442 AACGTGCTCACAATTCTAAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATGTGAAGGAAAGTGTTAATATTTCCTGAAGGACATAAAATAACGTTTGAATAAATGTCAGAACAAGAGATGTGCAACGAAAGCCAAGTTTTCAAATAAATACATACATGTGTTATGCATTCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24894056 182 - 73212453 AATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATGTGAAGGAAAGTGTTAATATTTCCTGAAGGACATAAAATAACGTTTGAATAAATGTCAGAACAAGAGATGTGCAACGAAAGCCAAGTTTTCAAATAAATACATCCATGTGTTACGCATGCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48119417 182 - 81552678 CATGTACTCCCAATTCTCAAGAGTAAATAGAAAAATACGTAAATAAATCTGCCAAGCCTATGTGAAAGAAAGTGTTAACATTTCCTGAAGGACATAAAATAATGTTTGAATAAATGTCAGATCAAGAGACGTGCAACGAAAGCCAAGTTTTCGAATAAATACATACATGTGTTACGCATGCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53227907 182 + 80904711 aATGTGCTCACAATTCTCAAGTATAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAAGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGAGGTGCAACCAAAGCCAGGTTTTCAAATAAATACATACATGTGTTACACATGCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52792825 182 + 80997621 aATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAAGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGAGGTGCAACCAAAGCCAGGTTTTCAAATAAATACATACATGTGTTACACATGCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47797705 182 + 74645514 aatgtgctcATAATTCTCAagagtaaatagaaaaatatgtaaataaatctgCCAAGCCTATATGAAGGAAAGTGTTAACATTTcctgaaagatataaaataatgtttgaatAAATGTCAGAACAAGTGAGGTGCAACCAAAGCCAGgttttcaaataaatacatacaggTGTTACACATGCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10060486 182 - 75148670 aATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAGTAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAGGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGATGCGCAACCAAAGCCAGGTTTTCGAATAAATACATACATGTGTTACACATGCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953532 182 + 159171411 TGTGTACTCACTATTCTCAAGAGTAAATAGAAAAATATATAAATAAATCTGCCAAGCCTATGTGAAGAAAAGTGCTAACATTTTCTGGAAGACATAAAATAATGTTTGAATAAATGTCAGAACAAGAGATGTGCAACCAAAGCCAGCTTTTCGAATAAATACATACATGTGGTATAAATGCT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99631038 46 + 122082543 I a score=1300870.000000 s hg38.chr17_JH159146v1_alt 250800 417 + 278131 TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGGCAAAGAC-CGTGATGGGAAACTTACCTTTG--------GTTGCATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAAT--CCTTAGA-------AAATAATAAATTTGATTTATATAAAATTCATAATTTTTTCTACAGATTCTGTTAAGTATGTTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcagacactgagatggagagcaatatgcaggaggtttattgaagcatgctcttgggattaacac- s panTro4.chr17 66372397 417 - 82630442 TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGGCAAAGAC-CGTGATGGGAAACTTACTTTTG--------GTTGCATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAAT--CCTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAATTTTTTCTACAGATTCTGTTAAATATGTTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTAAATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCACGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcagacactgagatggagagcaacatacaggaggtttattgaagcatgctcttgggattaacac- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24894238 417 - 73212453 TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGGCAAAGAC-CGTGACAGGAAACTTACTTTTG--------GTTGCATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGCAT---------------------------------------------------------------------------------AAATGATCTAAACAT--CTTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAATATTTTCTACAGATTCTGTTAAATATATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaagaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgctcttgtgattaacac- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48119599 425 - 81552678 TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGACAAAGAC-CATGATGGGAAACTTACTTTTGGTCACATTGTCACATTCTTCTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATCATCTAAACAT--CCTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAATTTTTTCTACAGATTCTGTTAAATGTATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATCAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcaggcactgagatggacagcaacatacaggaggtttattgaagcatgctcttgggattaacac- i nomLeu3.chr19 C 0 T 14081 s rheMac3.chr16 53228089 416 + 80904711 TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CATGATGGGAAGCTTACTTTTG--------GTCACATTCTTTCGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTGT---------------------------------------------------------------------------------AAATGATACAAAAAT--CCTTAGa-------aaataataaatatgatttata-aaaattcataattttttCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCATTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGAcaggctgcgttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaatcatgttcttgggattaacac- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52793007 416 + 80997621 TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CATGATGGGAAACTTACTTTTG--------GTCACATTCTTTCGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTGT---------------------------------------------------------------------------------AAATGATACAAAAAT--CCTTAGA-------AAATAATAAATATGATTTTTA-AAAATTCATAATTTTTTCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCTTTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGAcaggctgcgttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgttcttgggattaacac- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47797887 416 + 74645514 TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CGTGATGGGAAACTTACTTTTG--------GTCACATTCTTTCATATCGTCTAAATGTTTAAAGAgcatatatttgtgtgt---------------------------------------------------------------------------------aaatgatacaaaaat--ccttaga-------aaataataaatatgatttata-aaaattcataattttttctaCAGAttctgttaaatatattttctgctcttttgtttacattcttatttctttcatgaactaaaatattaaaagtacatTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGACAGGCTGCGTTCCCCAGGAAGCAGACACTGAGATGGAGAGCAACATGCAAGAGGTTTATTGACGCATGTTCTTGGGATTAAcac- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10060668 416 - 75148670 TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATCGGCAAAGAC-CATGATGGGAAACTTACTTTTG--------GTCACGTTCTTTTGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAGT--CCTTAGA-------AAATAATAAATATGATTTATA-AAAATTCATAATTTTTTCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCTTTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATATGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCCGGGGGAcaggctgggttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgttcttgggattaacac- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953714 409 + 159171411 TTTAATGGGGAC-TATCTCAATTTGCAACACTAGGTCTTGAATGGGATTGGCAAAGAC-CATGATGGGAAACTTAATTTTG--------GTCACATTGTTTTGTATCATCTAAATGTTTAAAGCACATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAAT--CCTTAGa-------aaataataaatgtgatttatataaaatttataat-ttttCTACAG--TCTGCTAAACATTTTTTCTGCTATGGTGTTTACCTTCTTGTTTCTTTCATGAAGTAAAATATTGAAAGGACGTTTCAGTCTGTCATTTCAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcagcctgggttccccaggaagcagacactgagatggagagcaatatgcaggaggtttattaaagc----tcttaggattaacac- i calJac3.chr5 C 0 C 0 s mm10.chr11 99631084 496 + 122082543 TTTAATAAGGCTGCACTGCA-----TACCAGTGGATCCTGAATGAGATTAGCAATGACTCACAAAGAGAAATTTACCTTTG--------GTCACAGACTATCGTGTTGCTTTAAATTCTAAAGACTCTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagaggatagagagGTTATCCTAGAAAGGTATAAATGATAAATGTTAATTGAATAAACTTAATAATTTTCTTCATGGATTATGTGCAACG-AGTTTCTGCCATCATGCTTGTATTCTTATTTCTACGAGGCACAGGCAGATTGAACATTCACTTTAATGAATAGTTACAGCTCTCAAGTCATCGATCGTGGG---CAGGTTTTT----GGAATAGATGGAAAtctccagagagcatgtgctgaggcagagatcggcatgctgaaggctcatggggacatgttctggggatcaactgt i mm10.chr11 I 46 C 0 e canFam3.chr9 39470492 10432 - 61074082 I a score=15397.000000 s hg38.chr17_JH159146v1_alt 251217 8 + 278131 -tggggaaa s panTro4.chr17 66372814 8 - 82630442 -tggggaaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24894655 8 - 73212453 -tggggaaa i ponAbe2.chr17 C 0 M 504 s rheMac3.chr16 53228505 8 + 80904711 -tggggaga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52793423 8 + 80997621 -tggggaga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47798303 8 + 74645514 -tggggaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10061084 8 - 75148670 -tggggaga i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112954123 8 + 159171411 -tgaggagg i calJac3.chr5 C 0 C 0 s mm10.chr11 99631580 8 + 122082543 cctggaag- i mm10.chr11 C 0 C 0 e canFam3.chr9 39470492 10432 - 61074082 I e nomLeu3.chr19 48120024 14081 - 81552678 T a score=25731.000000 s hg38.chr17_JH159146v1_alt 251225 13 + 278131 tgaggggagggga s panTro4.chr17 66372822 13 - 82630442 tgaggggagggga i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53228513 13 + 80904711 ggaggggggggaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52793431 13 + 80997621 ggaggggagggaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47798311 13 + 74645514 ggaggggagggaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10061092 13 - 75148670 ggaggggagggaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112954131 13 + 159171411 ggaagggagggga i calJac3.chr5 C 0 C 0 s mm10.chr11 99631588 13 + 122082543 ggaaggaaagaga i mm10.chr11 C 0 I 2927 e ponAbe2.chr17 24894663 504 - 73212453 M e canFam3.chr9 39470492 10432 - 61074082 I e nomLeu3.chr19 48120024 14081 - 81552678 T a score=17112.000000 s hg38.chr17_JH159146v1_alt 251238 15 + 278131 ggggaggggagggga s panTro4.chr17 66372835 9 - 82630442 ggggaaggg------ i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53228526 15 + 80904711 ggggagggaaaggga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52793444 15 + 80997621 ggggagggaaaggga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47798324 15 + 74645514 ggggagggaaaggga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10061105 15 - 75148670 ggagaggggagggga i chlSab2.chr16 C 0 I 1714 s calJac3.chr5 112954144 15 + 159171411 tgggaagggagagga i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24894663 504 - 73212453 M e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99631601 2927 + 122082543 I e nomLeu3.chr19 48120024 14081 - 81552678 T a score=2668.000000 s hg38.chr17_JH159146v1_alt 251253 7 + 278131 ggggagg- s rheMac3.chr16 53228541 7 + 80904711 ggagagg- i rheMac3.chr16 C 0 I 1858 s macFas5.chr16 52793459 7 + 80997621 ggagagg- i macFas5.chr16 C 0 I 4 s papAnu2.chr16 47798339 7 + 74645514 ggagagg- i papAnu2.chr16 C 0 I 4 s calJac3.chr5 112954159 7 + 159171411 -cagaagg i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24894663 504 - 73212453 M e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99631601 2927 + 122082543 I e chlSab2.chr16 10061120 1714 - 75148670 I e nomLeu3.chr19 48120024 14081 - 81552678 T e panTro4.chr17 66372844 0 - 82630442 C a score=46064.000000 s hg38.chr17_JH159146v1_alt 251260 119 + 278131 ggaaagtgaagggagagaaggggaaggggaaggggaggggattaacactggggagaggaggggaggggaagggcgggg---aggggaggggagggcaagggaaaggaagaaagggaggggaa s panTro4.chr17 66372844 106 - 82630442 -------gaagggaga------gaagGGGAAGGGAAGGGGATTAACACTggggaaaggaggggaggggaagtgtgggg---aggggaggggagggcaagagaaaggaagaaagggaggggaa i panTro4.chr17 C 0 C 0 s macFas5.chr16 52793470 122 + 80997621 gggaggggaggggaggcaaggggaaagggagggaaagggaaagggtaggggaaactgaaggaaagggaaagggaaggggaaaggaaaggaaagggaaagggaagggaaggaaagggaaagga i macFas5.chr16 I 4 C 0 s papAnu2.chr16 47798350 122 + 74645514 gggaggggaggggaggcaaggggaaagggaggaaaagggaaagggtaggggaaactgaaggaaagggaaagggaaggggaaaggaaaggaaagggaaagggaagggaaggaaagggaaagga i papAnu2.chr16 I 4 C 0 s calJac3.chr5 112954166 82 + 159171411 ---------------------ggagggggaagggagagga----------------ggggtgaagaggaagagagggg---ctgggaggggaggggaggggaaagaaaggaaggAAGGAAAA i calJac3.chr5 C 0 I 1183 e ponAbe2.chr17 24894663 504 - 73212453 M e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99631601 2927 + 122082543 I e chlSab2.chr16 10061120 1714 - 75148670 I e rheMac3.chr16 53228548 1858 + 80904711 I e nomLeu3.chr19 48120024 14081 - 81552678 T a score=3046.000000 s hg38.chr17_JH159146v1_alt 251379 10 + 278131 cgggtgggga s panTro4.chr17 66372950 10 - 82630442 ggggtgggga i panTro4.chr17 C 0 C 0 s macFas5.chr16 52793592 10 + 80997621 agggaaagga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47798472 10 + 74645514 agggaaagga i papAnu2.chr16 C 0 C 0 e ponAbe2.chr17 24894663 504 - 73212453 M e canFam3.chr9 39470492 10432 - 61074082 I e mm10.chr11 99631601 2927 + 122082543 I e calJac3.chr5 112954248 1183 + 159171411 I e chlSab2.chr16 10061120 1714 - 75148670 I e rheMac3.chr16 53228548 1858 + 80904711 I e nomLeu3.chr19 48120024 14081 - 81552678 T a score=-1663.000000 s hg38.chr17_JH159146v1_alt 251389 9 + 278131 agggaagg---------------------g s panTro4.chr17 66372960 30 - 82630442 agggaggggaaggggtggggaaggggagag i panTro4.chr17 C 0 C 0 s macFas5.chr16 52793602 24 + 80997621 acggatgcgaagggaagggaaggg------ i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47798482 24 + 74645514 acggatgcgaagggaagggaaggg------ i papAnu2.chr16 C 0 C 0 s canFam3.chr9 39480924 9 - 61074082 ----------AGGGCAGGG----------- i canFam3.chr9 I 10432 C 0 e ponAbe2.chr17 24894663 504 - 73212453 M e mm10.chr11 99631601 2927 + 122082543 I e calJac3.chr5 112954248 1183 + 159171411 I e chlSab2.chr16 10061120 1714 - 75148670 I e rheMac3.chr16 53228548 1858 + 80904711 I e nomLeu3.chr19 48120024 14081 - 81552678 T a score=4655.000000 s hg38.chr17_JH159146v1_alt 251398 12 + 278131 gaggggaagggg-- s panTro4.chr17 66372990 12 - 82630442 gaggggaagggg-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895170 12 - 73212453 GAGGGTAAGGGG-- i ponAbe2.chr17 M 504 C 0 s macFas5.chr16 52793626 11 + 80997621 -aagggaaggga-- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47798506 11 + 74645514 -aagggaaggga-- i papAnu2.chr16 C 0 C 0 s canFam3.chr9 39480933 12 - 61074082 --GGCTCAGCAGCA i canFam3.chr9 C 0 C 0 e mm10.chr11 99631601 2927 + 122082543 I e calJac3.chr5 112954248 1183 + 159171411 I e chlSab2.chr16 10061120 1714 - 75148670 I e rheMac3.chr16 53228548 1858 + 80904711 I e nomLeu3.chr19 48120024 14081 - 81552678 T a score=5650.000000 s hg38.chr17_JH159146v1_alt 251410 3 + 278131 agg s panTro4.chr17 66373002 3 - 82630442 agg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895182 3 - 73212453 AGG i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52793637 3 + 80997621 aag i macFas5.chr16 C 0 I 1635 s papAnu2.chr16 47798517 3 + 74645514 agg i papAnu2.chr16 C 0 I 1651 s calJac3.chr5 112955431 3 + 159171411 AGA i calJac3.chr5 I 1183 C 0 s mm10.chr11 99634528 3 + 122082543 AGG i mm10.chr11 I 2927 I 1 s canFam3.chr9 39480945 3 - 61074082 AGA i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10061120 1714 - 75148670 I e rheMac3.chr16 53228548 1858 + 80904711 I e nomLeu3.chr19 48120024 14081 - 81552678 T a score=556160.000000 s hg38.chr17_JH159146v1_alt 251413 168 + 278131 ggaggcacagcacaaggggtgggggcaggtggaGATGACACAGGTTGGATGATAGCAAGTGACGTGGCAGGAGACTCGACCACAGACTGGACGCAGGCAGCAGCAGGGGCAGCA------------GCAGCTCGATT---------------------------------------------------------------------------CACAGCAAGAGGGGC---------------AGCAGCTGCTGGAGATGCAGCAGC---------------TGGG s panTro4.chr17 66373005 183 - 82630442 ggaggCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGTGATAGCAAGTGATGTGGCAGGAGACTCGACCACAGACTGGACGCAGgcagcagaaggggcagca------------gcagctcgatt---------------------------------------------------------------------------cacagcaagaggggc---------------agcagctgctggagatgcagcagctggggcggcagcaggtggg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895185 168 - 73212453 GGAGGCACAGCACAAGGGGCGGGGACAGGTGGAGATGACACAGGTTGTGCAATAGCAAGTGATGTGGCAGGAGACTCGACCACAGACTGGACACAGgcagcagcaggggcagca------------gcagctcgatt---------------------------------------------------------------------------cacagcaagaggggc---------------agcagctgctggagatgcagcagc---------------tggg i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53230406 168 + 80904711 GGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggggcggca------------gcagctggatt---------------------------------------------------------------------------cacagcagctggggc---------------ggcagcagctggagatgcagcagc---------------tggg i rheMac3.chr16 I 1858 C 0 s macFas5.chr16 52795275 168 + 80997621 GGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGCA------------GCAGCTGGATT---------------------------------------------------------------------------CACAGCAGCTGGGGC---------------GGCAGCAGCTGGAGATGCAGCAGC---------------TGGG i macFas5.chr16 I 1635 C 0 s papAnu2.chr16 47800171 168 + 74645514 GGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACgcaggcagcagcaagggcggca------------gcagctggatt---------------------------------------------------------------------------cacagcaggaggggc---------------ggcagcagctggagatgcagcagc---------------tggg i papAnu2.chr16 I 1651 C 0 s chlSab2.chr16 10062834 198 - 75148670 GGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGCA------------GCAGCTGGATTCACAGCAAG---------------------------------------------AGGGACGACAGCAGCTGGACACACAGCAGCTGGGGC---------------GGCAGCAGCTGGAGATGCAGCAGC---------------TGGG i chlSab2.chr16 I 1714 C 0 s calJac3.chr5 112955434 164 + 159171411 GGAGGTGCAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGACGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggaacgaca------------gcagttggatt---------------------------------------------------------------------------cacagcaagaggggc---------------ggcagcagctggagacgcagcagc------------------- i calJac3.chr5 C 0 C 0 s mm10.chr11 99634532 267 + 122082543 GATGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAGACTGGTCTCAGAcagcagcaggggcggcaacaggggcg---gcagcagggtcggcagcagggacggcaacaggggctgcagcaagggctgcagcaggggcggcagcaggggcggcagcaACTAGAACCACAGCAGCTGGAGCTACCACAGGAGGGTTGACAGCAGCTGGAAATGCAGCAGC---------------TGGG i mm10.chr11 I 1 C 0 s canFam3.chr9 39480948 195 - 61074082 GGAGGCACAGCACATGGGACGGGGGCAGGTGGAGATGACACAGGTGGGGCGATAGCAGGTAGTGTGGCAGGAGACCCGGCCACAGACTGGGCGCAggcagcaggaggggcagcaggaggggcggcagcagctagagc------------------------------------------------------------cacaggagctggagccacagcaggaggggc---------------ggcagcagctagagatgcagcagc---------------tggg i canFam3.chr9 C 0 I 160 e nomLeu3.chr19 48120024 14081 - 81552678 T a score=322371.000000 s hg38.chr17_JH159146v1_alt 251581 104 + 278131 -----GTGGCAGCAGGTGGGCTGGAAGCACACGGAATGGCAGCA----------------------------------------------CTG--------------GGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGTGGCAGCAGGTCGTCCTGCAGCAGGTGG s panTro4.chr17 66373188 104 - 82630442 -----gcggcagcaggtgggctggcagcacacggaatggcagca----------------------------------------------ctg--------------gggtctgcagcagctggacacacagcagctggggtggcagcagGTCATCCTGCAGCAGGTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895353 104 - 73212453 -----gcagcagcaggtgggctggcagcacacagactggcagca----------------------------------------------ctg--------------gggcctgcagcagctggacacacagcagctggggcggcagcagGTGGTCCTGCAGCAGGTGG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53230574 104 + 80904711 -----gcgacagcaggtgggctggcagcacacagactggcagca----------------------------------------------ctg--------------gggtctgcagcagctggacacacagcagctggggcggcagcaAGTGGTCCTGCAGCAGGTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795443 104 + 80997621 -----GCGACAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCA----------------------------------------------CTG--------------GGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAAGTGGTCCTGCAGCAGGTGG i macFas5.chr16 C 0 I 31 s papAnu2.chr16 47800339 94 + 74645514 -----gcggcagcaggtgggctggcagcaCACAGACTGGCAGCA----------------------------------------------CTG--------------GGGTCTgcagcagctggacacacagcagctggggcggcagcagctgg---------agatg- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063032 104 - 75148670 -----GCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCA----------------------------------------------CTG--------------GGGCCTGCAGCAGCTGGACACACAGCAGCTGGGACGGCAGCAAGTGGTCCTGCAGCAGGTGG i chlSab2.chr16 C 0 I 16 s calJac3.chr5 112955598 93 + 159171411 ----------------tgggctggcagcacacagactggcagca----------------------------------------------ctg--------------gggtctgcaacagctggagatgcagcagctgggtcggcagcaAGTGGTCCTGCAGCAGGTGG i calJac3.chr5 C 0 I 10 s mm10.chr11 99634799 104 + 122082543 -----GCGGCAGCAGGTCGGCTGGCAGCACACAGACTGGCAGCA----------------------------------------------CTG--------------GGGCCTGCAGCAACTGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGCCTGCAGCAGCTGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39481303 169 - 61074082 gtggtcctgcagcaggtggtctggcagcaggtggggcggcagcagctagagatgcagcagctgggcctgcagcagctggagccacagcagcTGGAACTAGAGCAGGAGGGGCGGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGGTGG i canFam3.chr9 I 160 C 0 e nomLeu3.chr19 48120024 14081 - 81552678 T a score=71008.000000 s hg38.chr17_JH159146v1_alt 251685 30 + 278131 TCTG--------------------------------------------------ACAGCAGCTGGGGCGGCAGCAGGTGG s panTro4.chr17 66373292 30 - 82630442 TCTG--------------------------------------------------ACAGCAGCTGGGGTGACAACAGGTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895457 30 - 73212453 TCTG--------------------------------------------------ACAGCAGCTGGGGCGACAGCAGGTGG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 27688657 30 - 80904711 TCTG--------------------------------------------------ACAGCAGCTGGGGCGGCAGCAGGTGG i rheMac3.chr16 T 100 I 59 s macFas5.chr16 52795578 74 + 80997621 TCTG------CAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGCTGGAGATGCAGCAGCTGGGGCGGCAGCAGGTGG i macFas5.chr16 I 31 C 0 s papAnu2.chr16 47800433 25 + 74645514 -------------------------------------------------------cagcagctggggcggcagcaggtgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063152 74 - 75148670 CCTG------CAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGCTGGAGATGCAGCAGCTGGGGCGGCAGCAGGTGG i chlSab2.chr16 I 16 C 0 s calJac3.chr5 112955701 80 + 159171411 tctgggacggcagcaactggattgacagcaagaggggcggcagcagctggagatgcagcagctggggcggcagcaagtgg i calJac3.chr5 I 10 C 0 s mm10.chr11 99634903 30 + 122082543 --------------------------------------------------ACACACAGCAGCTGGGGCGGCAGCAGGTGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39481472 45 - 61074082 TCTG-----------------------------------gcagcaggaggggcggcagcagctagagatgcagcagctgg i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48120024 14081 - 81552678 T a score=152930.000000 s hg38.chr17_JH159146v1_alt 251715 51 + 278131 GCTGGCAGCACACGGAATGGCAGCACT---------------GGGGTCTGCAGCAGC--TGGACACAG s panTro4.chr17 66373322 51 - 82630442 GCTGGCAGCACACAGACTGGCAGCACT---------------GGGGTCTGCAGCAGC--TGGACACAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895487 51 - 73212453 GCTGGCAGCACACAGACTGGCAGCACT---------------GGGGTCTGCAGCAGC--TGGACACAG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53230678 51 + 80904711 GCTGGCAGCACACAGACTGGCAGCACT---------------GGGGTCTGCAGCAGC--TGGACACAc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795652 51 + 80997621 GCTGGCAGCACACAGACTGGCAGCACT---------------GGGGTCTGCAGCAGC--TGGACACGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800458 51 + 74645514 gctggcagcacacagactggcagcact---------------ggggcctgcagcagc--tggacacac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063226 51 - 75148670 GCTGGCAGCATACAGATTGGCAGCACT---------------GGGGCCTGCAGCAGC--TGGACACAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955781 51 + 159171411 gctggcagcacacagactggcagcact---------------ggggcctgcagcagc--tggacacac i calJac3.chr5 C 0 C 0 s mm10.chr11 99634933 53 + 122082543 TCCTACAGCAGGTGGTTTGGCAGCAGC---------------TGGGCTGGCAGCAGCCTTGGCCACAG i mm10.chr11 C 0 I 10 s canFam3.chr9 39481517 66 - 61074082 gcctgcagcagctggagccacagcagctggaactagagcaggaggggcggcagcagc--tggacacac i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48120024 14081 - 81552678 T a score=26780.000000 s hg38.chr17_JH159146v1_alt 251766 8 + 278131 AGCAGCTG s panTro4.chr17 66373373 8 - 82630442 AGCAGCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895538 8 - 73212453 AACAGCTG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53230729 8 + 80904711 agcagctg i rheMac3.chr16 C 0 I 39005 s macFas5.chr16 52795703 8 + 80997621 AGCAGCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800509 8 + 74645514 agcagctg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063277 8 - 75148670 AGCAGCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955832 8 + 159171411 agcagctg i calJac3.chr5 C 0 C 0 s canFam3.chr9 39481583 8 - 61074082 agcagctg i canFam3.chr9 C 0 C 0 e mm10.chr11 99634986 10 + 122082543 I e nomLeu3.chr19 48120024 14081 - 81552678 T a score=60324.000000 s hg38.chr17_JH159146v1_alt 251774 22 + 278131 TGGGAGCAGGAGGTGGTTCTGC s panTro4.chr17 66373381 22 - 82630442 TGGGGGCAGGAGGTGGTTCTGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895546 22 - 73212453 GGGTGGCAGCAGGTGGTTCTGC i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 27688746 22 - 80904711 GGGCGACAGCACGTGGTCCTGC i rheMac3.chr16 I 59 C 0 s macFas5.chr16 52795711 22 + 80997621 GGGCGGCAGCAGGTGGTCCTGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800517 22 + 74645514 gggcGGCAGCAAGTGGTCCTGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063285 22 - 75148670 GGGCGGCAGCAGGTGGTCCTGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955840 22 + 159171411 gggcggcagcagGTGGTCCTGC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39481591 22 - 61074082 gggcggcagcaggtggtcctgc i canFam3.chr9 C 0 C 0 e mm10.chr11 99634986 10 + 122082543 I e nomLeu3.chr19 48120024 14081 - 81552678 T a score=62985.000000 s hg38.chr17_JH159146v1_alt 251796 20 + 278131 AGCAGGTGGTCTGACAACAG s panTro4.chr17 66373403 20 - 82630442 AGCAGGTGGTCTGACAAGAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895568 20 - 73212453 AGCAGGTGGTCTGACAACAG i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 27688768 20 - 80904711 AGCAGGTGGTCTGACAGCAG i rheMac3.chr16 C 0 T 42815 s macFas5.chr16 52795733 20 + 80997621 AGCAGGTGGTCTGGCAGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800539 20 + 74645514 AGCAGGTGGGCTGGCAGCAC i papAnu2.chr16 C 0 I 45 s chlSab2.chr16 10063307 20 - 75148670 AGCAGGTGGTCTGGCAGCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955862 20 + 159171411 AGCAGGTGGTCTGACAGCAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99634996 20 + 122082543 AGCAGACAGAGCCACAAGAG i mm10.chr11 I 10 I 4 s canFam3.chr9 39481613 20 - 61074082 agcaggtggtctggcagcag i canFam3.chr9 C 0 C 0 e nomLeu3.chr19 48120024 14081 - 81552678 T a score=36818.000000 s hg38.chr17_JH159146v1_alt 251816 15 + 278131 CTGGGGTGACAGCAG s panTro4.chr17 66373423 15 - 82630442 CTGGGGTGACAGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895588 15 - 73212453 CTGGGGTGACAGCAG i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52795753 15 + 80997621 CTGGGGCGGCAGCAG i macFas5.chr16 C 0 T 18637 s papAnu2.chr16 47800604 15 + 74645514 ctggggcggcagcag i papAnu2.chr16 I 45 C 0 s chlSab2.chr16 10063327 15 - 75148670 CTGGGGCGGCAGCAG i chlSab2.chr16 C 0 I 56228 s calJac3.chr5 112955882 15 + 159171411 CTGGGGCGGCAGCAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99635020 15 + 122082543 CCATGGTGTCAGAGG i mm10.chr11 I 4 I 6 s canFam3.chr9 39481633 15 - 61074082 gaggggcggcagcag i canFam3.chr9 C 0 C 0 e rheMac3.chr16 27688788 42815 - 80904711 T e nomLeu3.chr19 48120024 14081 - 81552678 T a score=1603.000000 s hg38.chr17_JH159146v1_alt 251831 2 + 278131 TT s panTro4.chr17 66373438 2 - 82630442 TT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895603 2 - 73212453 GT i ponAbe2.chr17 C 0 C 0 s papAnu2.chr16 47800619 2 + 74645514 ct i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112955897 2 + 159171411 TT i calJac3.chr5 C 0 T 29043 s mm10.chr11 99635041 2 + 122082543 TT i mm10.chr11 I 6 I 2 s canFam3.chr9 39481648 2 - 61074082 cT i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10063342 56228 - 75148670 I e macFas5.chr16 52795768 18637 + 80997621 T e rheMac3.chr16 27688788 42815 - 80904711 T e nomLeu3.chr19 48120024 14081 - 81552678 T a score=845.000000 s hg38.chr17_JH159146v1_alt 251833 1 + 278131 G s panTro4.chr17 66373440 1 - 82630442 G i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895605 1 - 73212453 G i ponAbe2.chr17 C 0 C 0 s papAnu2.chr16 47800621 1 + 74645514 g i papAnu2.chr16 C 0 I 26 s mm10.chr11 99635045 1 + 122082543 G i mm10.chr11 I 2 C 0 s canFam3.chr9 39481650 1 - 61074082 A i canFam3.chr9 C 0 C 0 e calJac3.chr5 112955899 29043 + 159171411 T e chlSab2.chr16 10063342 56228 - 75148670 I e macFas5.chr16 52795768 18637 + 80997621 T e rheMac3.chr16 27688788 42815 - 80904711 T e nomLeu3.chr19 48120024 14081 - 81552678 T a score=22735.000000 s hg38.chr17_JH159146v1_alt 251834 12 + 278131 -----------GGTGGGCTGGCA s panTro4.chr17 66373441 12 - 82630442 -----------GGTGGGCTGGCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895606 12 - 73212453 -----------GGTGGGCTCGCA i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53269742 12 + 80904711 -----------GGTGGGCTGGCA i rheMac3.chr16 I 39005 C 0 s papAnu2.chr16 47800648 12 + 74645514 -----------ggtgggctggca i papAnu2.chr16 I 26 C 0 s chlSab2.chr16 10119570 12 - 75148670 -----------GGTGGGCTGGCA i chlSab2.chr16 I 56228 C 0 s mm10.chr11 99635046 12 + 122082543 -----------GGTAGGCTTACA i mm10.chr11 C 0 T 7702 s canFam3.chr9 39481651 23 - 61074082 GAGATGCAGCAGCTGGGCCTGCA i canFam3.chr9 C 0 C 0 e calJac3.chr5 112955899 29043 + 159171411 T e macFas5.chr16 52795768 18637 + 80997621 T e nomLeu3.chr19 48120024 14081 - 81552678 T a score=26451.000000 s hg38.chr17_JH159146v1_alt 251846 20 + 278131 GCACACAGACTGGAAGCACT s panTro4.chr17 66373453 20 - 82630442 GCACACACACTGGAAGCACT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895618 20 - 73212453 GCACACAGACTGGAAGCACT i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53269754 20 + 80904711 GCACACAGACTGGCAGCACT i rheMac3.chr16 C 0 C 0 s papAnu2.chr16 47800660 20 + 74645514 gcacacagactggcagcact i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10119582 20 - 75148670 GCACACAGACTGGCAGCACT i chlSab2.chr16 C 0 C 0 s canFam3.chr9 39481674 15 - 61074082 GCA-----GCTGGAGCCACA i canFam3.chr9 C 0 C 0 e mm10.chr11 99635058 7702 + 122082543 T e calJac3.chr5 112955899 29043 + 159171411 T e macFas5.chr16 52795768 18637 + 80997621 T e nomLeu3.chr19 48120024 14081 - 81552678 T a score=2443.000000 s hg38.chr17_JH159146v1_alt 251866 3 + 278131 GGG-- s panTro4.chr17 66373473 3 - 82630442 GGG-- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895638 3 - 73212453 ggg-- i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53269774 3 + 80904711 GGG-- i rheMac3.chr16 C 0 T 57149 s papAnu2.chr16 47800680 3 + 74645514 ggg-- i papAnu2.chr16 C 0 T 20000 s chlSab2.chr16 10119602 3 - 75148670 GGG-- i chlSab2.chr16 C 0 T 75519 s calJac3.chr5 112926856 3 + 159171411 gga-- i calJac3.chr5 T 29043 C 0 s canFam3.chr9 39481689 3 - 61074082 --GCC i canFam3.chr9 C 0 C 0 e mm10.chr11 99635058 7702 + 122082543 T e macFas5.chr16 52795768 18637 + 80997621 T e nomLeu3.chr19 48120024 14081 - 81552678 T a score=12436.000000 s hg38.chr17_JH159146v1_alt 251869 4 + 278131 GCTG s panTro4.chr17 66373476 4 - 82630442 GCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895641 4 - 73212453 gctg i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53212628 4 + 80904711 gctg i rheMac3.chr16 T 57149 C 0 s macFas5.chr16 52777131 4 + 80997621 gctg i macFas5.chr16 T 18637 C 0 s papAnu2.chr16 47780683 4 + 74645514 GCTG i papAnu2.chr16 T 20000 C 0 s chlSab2.chr16 10044086 4 - 75148670 gctg i chlSab2.chr16 T 75519 C 0 s calJac3.chr5 112926859 4 + 159171411 gcgg i calJac3.chr5 C 0 C 0 s canFam3.chr9 39481692 4 - 61074082 GCTG i canFam3.chr9 C 0 T 12828 e mm10.chr11 99635058 7702 + 122082543 T e nomLeu3.chr19 48120024 14081 - 81552678 T a score=3037873.000000 s hg38.chr17_JH159146v1_alt 251873 1340 + 278131 CAtggcatctttgaactgcacatagtaaaatgcaagaggaaagaaatgatttaaagatggaattcataattaaaagggaaacagaacataaagatgtggaaaatgtggagactgaccatataaagaatgaaaaagcatgcaagattgtggccaagtaatgctttgttacaaggattgatatgaatagaaggaagctaggtgctgttcatcaaatcagtgggagaatggctctgaaggcatttcaaagatctttgaagctgtccctcccatcacaggctccaaatgagagaatcttaaggtcagaaagggtttggtactctccacattctagcacggtgcccctttgctgctccagttgtggctcaagtgggtttagatgagacttgcgctgctgctgcagaggccacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagactgcaggagttgtggggcaatggtggt--ccacctaggtttgaaaggatgtttctgacagcctgccttaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgtagaactatcagcctgcaatactagcctgagagag-ctgca-gcagagactccaatcagatagctgctgtatgggctgagcccagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaaga-ccccaggcagcccttccccatgtcgggcacatccaggagacagcacatggagtcgaagtttattctccagtc------ttaagatttaatgctgtcttccctgttggactcacctggggccagttacccttttttctttcctgttgctgccttttggaatgggcctgtctatcctatgcctctcccaccattggattttggaactagataacgtctttaataggttcacatatggaggagaatttgcctcaggataagtcctgtg-ttgagtcttattcatatcagagtcacatgagactcttagatttacattttgac-ttttaagttggtgctggaacaagttaatactttgggactattggaataaaatgaatatattttgtgtacgagaaggacatggatttgggggaccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaagttcatgtgttggaaacttgatcctcaatgccgcagtgttgggaggttgggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattaatgctgttatcacaaaagagggttccttataaaaggatgagtttgactccc s panTro4.chr17 66373480 1340 - 82630442 CAtggcatctttgaactgcacatagtaaaatgcaagaggaaagaaatgatttaaaggtggaattcataattaaaagggaaacagaacataaagatgtggaaaatgtggagactgaccatataaagaatgaaaaagcatgcaagattgtggccaagtaatgctttgttacaaggattgatatgaatagaaggaagctaggtgctgttcatcaaatcaatgggagaatggctctgaaggcatttcaaagatctttgaagctgtccctcccatcacaggctccaaataagagaatcttgaggtcagaaagggcttagtactctccacattctagcacagtgcccctttgctgctccagttgtggctcaagtgggcttagatgagacttgtgctgctgctgcagaggccacaaactgtgagccttggtgatgttcatgtagtactgactgtagatacacagactgcaggagttgtggggcaatggtggt--ccacctaggtttgaaaggatgtttcagacagcctgccttaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaatgggg------ggtcagagcagccactgagaccctagaactatagaactatcagcctgcaatactagcttgagagag-ctgca-gcagagactccaatcagatagctgctgtatgggctgagcccagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaagg-ccccaggcagccctgccccatgtagggcacatccaggagacggcacatggagtcgaagtttattctccagtc------ttaagatttaatgctgtcttccctgttggactcacctggggccagttacccttttttctttcctgttgctcccttttggaatgggcctgtctatcctatgcctctcccaccattggattttggaactagataacttctttaataggttcacatatggaggagaatttgcctcaggataagtcctgtg-ttgagtcttattcatatcagagtcacatgagactcttagatttacattttgac-ttttaagttggtgctggaacaagttaatactctgggactattggaataaaaggaatatattttgtgtacgagaaggacatggatttgggggaccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaagttcatgtgttggaaacttgatcctcaatgcagcagtgttgggaggcggggcctaaaaggagatgtttgggtcatggtgacaccaccctcatgagtggattaatattgttatcacaagagagggttccttataaaaggatgagtttgactccc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24895645 1339 - 73212453 cgtggcatctttgaactgcacatagtaaaatgcaagaggaaagaaatgatttaaaggcgggattcataattaaaagagaaacagaacataaagatgtagaaaatgtgcagactgaccatataaagaatgaaaaagcatgcaagggtgtggccaagtaatgctttgttacaaggattgatatgaatagaaggaagctaggtgctgttcatcaaatcaatgggagaatggctctgaaggcatttcaaagatctttgaagctgtccctcccatcacaggctccaaataagagaatcttgaggtcagaaagtgcttggtactctccacattctagcacagtgcccctttgctgctccagttgtggctcaagtgggcttagatgagacttgcgctgctgctgcagaggccacaaaccgtgagccttggtggcgttcatgtagtactgactgtagatacacagactgcaggagttgtggggccatggtggt--ccacctaggttagaaaggatgtttctgacagcctgccataggggtgtagccacagcagagaagttctcctagggccatgctcaggaaaacagcg------gatcagagcagccactgagaccctagaactatagaactatcagcctgcaatactagcctgagagag-ctgca-gcacagactccaatcagatagctgctgtatgggctgagcccagcaaagccatggggcagggctatctgagggcatttggggcctaacaccaagg-ccccaggcagccctgccccatggtgggcacatccaggaggcagcacatggagtcgaaggttattctccagtc------ttaagatttaatgctgtcttccctgttggactcacctggggccagttacccttttttgtttcctgttgctcccttttggaatgggcctgtctatcctatgcctctcccaccattggattttggaactagataacttctttaataggttcacatatggaggagaatttgcctcaggataagtcctgtg-ttgagtctcattcatatcagagtcacatgacactcttacatttacattttgac-ttttaagttggtgctggaacaagttaatactttgggactattggaataaaatgaatatattttgtatatgagaaggatgtggatttggggggccaagggtggaatgcaatggtttgaatgtgtc---------ccacaaagttcatgtgttggaaacttgatccacaatgcagcagtgttgggaggt-gggcctaacaggagatgtttgggtcatggtgacaccaccctcatgagtgaattaatgccgttatcacaagagagggttccttataaaaggatgagtttgactcct i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53212632 1325 + 80904711 catagcatctttgaacttcatatagtaaaatgcgagaggaaacaaatgattt-aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgcagcctggccatataaagaatgaaaaggcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagccatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagagcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagacgagacttgcgctgccactgcaaagggcacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgtggggccatggcggt--ccacctaggtttgaaaggatgtttccgacagcctgccacaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgcagaactatcagcc-------------tgagagagcctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgaggggctttggggcctaacaccaaggcccccaggcagcccagccccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattctccagtt------ttaagatttaatgctgtcttccctgttggactcgcttggggccagttacccttttttctttcctgttgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagaatttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttggaactattggaataaaatgaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgctggacacttgatcctcaatgcggcggtgctgggaggcggcgcccaac---agatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgggttccttataaaaggatgattttgactccc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52777135 1325 + 80997621 catagcatctttgaacttcatatagtaaaatgcgagaggaaacaaatgattt-aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgcagcctggccatataaagaatgaaaaggcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagccatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagagcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagacgagacttgcgctgccactgcaaagggcacaaactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgtggggccatggcggt--ccacctaggtttgaaaggatgtttccgacagcctgccacaggggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggg------ggtcagagcagccactgagaccctagaactgcagaactatcagcc-------------tgagagagcctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgaggggctttggggcctaacaccaaggcccccaggcagcccagccccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattctccagtt------ttaagatttaatgctgtcttccctgttggactcgcttggggccagttacccttttttctttcctgttgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagaatttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttggaactattggaataaaatgaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgttggacacttgatcctcaatgcggcggtgctgggaggcggcgcccaac---agatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgggttccttataaaaggatgattttgactccc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47780687 1335 + 74645514 CATAGCATCTTTGAACTTCATATAGTAAAATGCAAGAGGAAACAAATGATTT-AAGGTGGAATTCATAATTAAAAGGGAGACAGAACATAAAGATGtagaaaatgtgcagcctggccatataaagaatgaaaaagcatGCAAGGATGTGGCCAAGTGATGCTTTGATACAAGGATTGATATGAATAGAAGGAAGCTAGGTGCTGTTCATCACATCAATGGGAGAATGGCTCTGAAgccatttcagagatctttgaaGCTGTCCCTCTCATCATAGGCTCCAGATAAGAGAACCTTGAGGTCAGAAAGAGCTTGGTACTCCCCACATTCTAGCACAGTGCCCCTTTGCTGCTACAGTTGCGGTTCAAGTGGGCTTAGATGAGACTTGCACTGCCACTGCAAAGGGCACAAACTGTGAGCCTTGGTGGTGTTCATGTAGTACTGACTGTAGATACACAGAGTGCAGGAGCTGTGGGGCCATGGCGGT---CACCTAGGTTTGAAAGGATGTTTCCGACAGCCTGCCACAGGGGTGTAGCCACAGCAGAGAGGTCCTCCTAGGGCCATGCTCAGGAAAACGGGG------GGTCAGAGCAGCCACTGAGACCCTAGAACCGCAGAACTATCAGCC-------------TGAGAGAG-CTGCAGGCAGAGACTCCAATCAGATTGCTGCTGCATGGGCTGAGCCCAGCAAAGCCACAGGGCAGAGCTATTTGAGGGCCTTTGGGGCCTAACACCAAGGCCCCCAGGCAGCCCAGCCCCGTGGCAGGCATGTCCAGGAGGCAGCACATGGAGTCAAAGGTCATTCTccagtt------ttaagatttaatgctGTCTTCCCTGTTGGACTCGCTTGGGGCCAGttacccttttttctttcctgttgctcccttttggaatgggccTGTCTATACTATGCCTCTCCCAGTATCGGATTTTGGAACTAGATAACTTCTTTAATAGGTTCACATGTGGAGGAGAATTTGCCTCAGGATAAGTCCTGTG-TTGTGTCTCACTCATATCAGATTTAGATGACACTCTTAGATTtacattttgac-ttttaagttggttctggaacaagttaagactttggaacTATTggaataaaatgaacacattctGTGTATGAGAAGGACATGGATTTGGGGG-CcaagggtggaatgcagtggtttgaatgtgtccctcaaAATCCTCAAAATTCACGTGTTGGACACTTGATCCTCAATGCGGCAGTGCTGGGAGGTGGCGCCCAAcaggagatgtttgggtcatggtgaCACCACCCTCATGAGTGGATTCATGTTGTTATCACAAGAGTGGGTTCCTTATAAAAGGATGATTTTgactccc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10044090 1332 - 75148670 catagcatctttgaacttcatatagtaaaatgcaagaggaaacaaatgattt-aaggtggaattcataattaaaagggagacagaacataaagatgtagaaaatgtgcagcctggccatataaagaatgaaaaagcatgcaaggatgtggccaagtgatgctttgatacaaggattgatatgaatagaaggaagctaggtgctgttcatcacatcaatgggagaatggctctgaagtcatttcagagatctttgaagctgtccctctcatcacaggctccagataagagaaccttgaggtcagaaagggcttggtactccccacattctagcacagtgcccctttgctgctccagttgtggttcaagtgggcttagatgagacttgcgctgccactgcaaagggcacagactgtgagccttggtggtgttcatgtagtactgactgtagatacacagagtgcaggagctgt-gggccatggtggt--ccacctaggtgtgaaaggatgtttccgacagcctgccacagtggtgtagccacagcagagaggtcctcctagggccatgctcaggaaaacgggggggggcggtcagagcagccaccgagaccctagaactgtagaactatcagcc-------------tgagagag-ctgcaggcagagactccaatcagattgctgctgcatgggctgagcccagcaaagccacggggcagagctatctgagggcctttggggcctaacaccaagtcccccaggcagcccagtcccatggtaggcatgtccaggaggcagcacatggagtcaaaggttattctccagtt------ttaagatttaatgctgtcttccctgttggactcgcttggggccagttacccttttttctttcctgtcgctcccttttggaatgggcctgtctatactatgcctctcccagtattggattttggaactagataacttctttaataggttcacatgtggaggagagtttgcctcaggataagtcctgtg-ttgtgtctcactcatatcagatttagatgacactcttagatttacattttgac-ttttaagttggttctggaacaagttaagactttgggactattggaataaaaggaacacattctgtgtatgagaaggacatggatttggggg-ccaagggtggaatgcagtggtttgaatgtgtc---------cctcaaagttcacgtgttggacacttgatcctcaatgcggcggtgctgggaggtggcgcccaacaggagatgtttgggtcatggtgacaccaccctcatgagtggattcatgttgttatcacaagagtgtgttccttataaaaggatgattttgactccc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112926863 1329 + 159171411 catggcatctttgaactgcatatggtaaaatat-agaggaaataaatgatttaaagatggaattcatagttaaaagggaaacagaacataaagatgcagaaaatgtgcagcctggccatataaagaatgaaaaagcatgcaaggatgtggccaagtgatgctttgatataagggttgatacaaatagaaggaagctaggtgtcatttatcaaatcaatgggagaatgactctgaaggcatttcagagatctttgaagctgtccctcccatcacaggctacaaatatgagaatcttgagatcagaaagggcttggtactctccacattctaccacaatg-cccttggctgctccagttgtggctaaagtgggcttagatgagacttgtgctgccattgcagagggcacaaactgtgagtcttggtggcattcacatagtactgactgtaaacacacagactgcaggagttgtgggaccatggtgctctccacctaggtatcaaaggatgtttctgaca-cctgtcacaggggtgtagccactgcagagagctcctcctaggaccatgctcagg-gaactagg------ggtcagagcagccactgagaccctagaactatagaactatcagcctgcaatactagcctgagagag-ctacaggcagagacaccaatcaaacagctgctgcatggactgagcccagtaaagtcatggagcaaggctgtctgagggcctttggggcctgacaccaagacccccaggcagccctgccccatggtaggcatgtccaagag--agcacacggagtcaaaggttattctgcagttgcagtcttaagatttaacgctgttttccctgtcggactcacctggggccagttacccttttttctttcctgttgctcccttttgaaatagggatgtctgtcctatgcctgtcccactgttgtattttggaactaggtaacttctttaataggttcacatatgaaggagaatttgcctcaggataagtcctgggtttgaatctcactcatatcagatttagatgaga--cttagatttacattttgactttttaagttggtgctggaacaagttaagactttgggactatt----------gaatatatattgcatatgagaaggacatggatttggggggccaagggtggaatgcaatggtttgaatgtgtc---------cctcaaaggtcatgtgctggaaacttgatttccaa----gcagtgttggtggg-ggggcctcacaggagatatgtgggtcatggtgacgccaccctcatgagtgaattaatgtttttatcacgagactgggttccttataaaaggatgagtttggctccc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39481696 12828 - 61074082 T e mm10.chr11 99635058 7702 + 122082543 T e nomLeu3.chr19 48120024 14081 - 81552678 T a score=33008.000000 s hg38.chr17_JH159146v1_alt 253213 10 + 278131 tctttctctg s panTro4.chr17 66374820 10 - 82630442 tctttctttg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24896984 10 - 73212453 tctttctctg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48105943 10 - 81552678 tctttctctg i nomLeu3.chr19 T 14081 C 0 s rheMac3.chr16 53213957 10 + 80904711 tctttctctg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52778460 10 + 80997621 tctttctctg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47782022 10 + 74645514 tctttctctg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10045422 10 - 75148670 tctttctctg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112928192 10 + 159171411 tctttctctg i calJac3.chr5 C 0 C 0 e canFam3.chr9 39481696 12828 - 61074082 T e mm10.chr11 99635058 7702 + 122082543 T a score=3090481.000000 s hg38.chr17_JH159146v1_alt 253223 1082 + 278131 tctcaccctctctttttccttccacagtgggaagacacggtaT-TCCTGGTTATCTATAACC----AAGTCTCATTCTATAAACAGAATCCTAACTTCCACAACTTTCC-ACATATGTTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTGAAATGAAACTCTGATC----------CCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATACAC----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AAAGCCttcattcactcaagaaacatttatcaccagtgttctctgtgctgagtatcatggtaacaaaaagaaacatcatagcccatgcattcagggtatttgcactgtatatgggggaatgaaagaagtaaa-tgtctat-gatacagtagaatgtatcaaattat----------gagcacaagacaggaaataataataga---tgaatggggtagcttattaggaaatatattattgagaaggaaatattttaactgggttttgacacatgagtaggagtttgcagagtggac----a---aaaaaagatgaaacattccaagaagatgaagcagtctcagcaaGCTTAGCAAATT-GTATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaatcttggacaagtatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagta-ataagaatgtac-ctacttttta-aggttgtattaaagagtgaa-aatgaaa-------aagatatttagcacaatgtctggtacatagtcaatacttcacaagtAATATATATATACACTGAGGGTGTGTGGAAATTATCCACATACTATACATTTTTATTTTAGTTGTTTAATGAACATAATTGTAATT------------CTTTTCATTTTTGCCAAATTCTGTTTCTTATGCA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAACAAAT s panTro4.chr17 66374830 1090 - 82630442 tctcaccctctctttttccttccacagtgggaagacacggtaT-TCCTGGTTATCTATAAAC----AAGTCTCATTCTATAAACAGAATCCTAACTTCCACAACTTTCC-ACATATGTTATTTATCAGGGGACATGTTACTTACCGTAGAAATAAGTGTAGTTTTCCTGAAATGAAACTCTGATC----------CCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATACAT----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AAAGCCttcattcactcaagaaacatttatcaccggtgttctctgtgctgagtatcatggtaacaaaaagaaagatcatagcctatgcgttcagggtatttgcactgtatacggaggaatgaaagaagtaaa-tgtctat-gatacagtagaatgtatcaaattat----------gagcacaagacaggaaataataataaa---tgaatggggtagcttattaggaaagatattattgagaaggaaatattttaactgggttttgacacatgagtaggagttcgcagagtggac----a---aaaaaagatgaaacattccaagaagatgaagcagTTTCAGCAAGCTTAGTAAATT-GTATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaatcttggacaagtatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagta-ataagaatctacagtacttttta-aggttgtattaaagagtgaa-aatgaaataaatataagatatttagcacaatgtttggtacatagtcaatacttcacaagtAACATATATATACACTGAGGGTGTGTGGAACTTATCCACATACTATACATTTTTATTTTAGCTGTTTAATGAACATACTTGTAATT------------CTTTTCATTTTTGCCAAATTCTGTTTCTTATGCA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCGTATTATTG-------AAGGCTTAATAATTCTAAATATTGTTGACATATAACAAAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24896994 1084 - 73212453 tctcaccgtctcttttcccttccacagtgggaagacATGGTAT-TCCTGGTTATCTATAACC----AAGTCTCATTCTATAAACAGAATCCTAACTTCCACAACTTTCC-ACATATGTTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTGAAATGAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATACAT----TTTTAAAGGAC-CGTACATGCTTCTATGTCATCAA-AAAGCCttcattcactcaagaaacatttatcaccggtgttctctgtgctgagtatcatggtaacaaaaagaagcgtcatagcccatgccttcagggtatttgcattgcatatgggggaatgaaagaagtaaa-tgtctat-gatacagtagaatgtatcaaattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtagcttatcaggaaagatattattgagaaggaaatattttaactgggtcttgacaaatgagtaggcgtttgcagagtgtac----a---aaaaaagatgaaacattccaagaagatgaagcagtttcagcaaaCTTAGCAAATT-GTATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttcatcttggacaagtat------------tttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagta-ataagaatgtacactactttata-aggttgtattaaggagtgaa-aatgaaataaatataagatatttagcacaatgtctggtacatagtcaatacttcacaagtA--ATATACATACACTGAAGGTGTGTGGAACTTATCCACATACTATACATTTTTATTTTAGTTGTTTAATGAACATAATTGTAATT------------CTTTTCATTTTTGCCAAATTCTGCTTCTTATGCG---TGTGTCTTATACAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAACAAAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48105953 1081 - 81552678 tctcaccctctcttttcccttccacaatgggatgacacggtaT-TCCTGGTTATTTATAACC----AAGTCTCATTCTATAAACGGAACCCTAACTTCCACAACTTTCC-ACATATGTTATTTATCAGGGGACATGTTACTTACCACATAAATAAGTGTAGTTTTCCTGAAATGAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATACAT----TTTTAAAGGAC-CTTACATGCTTCTATGTCATCAA-AAAGCCttcattcactcaacaaacatttattaccggtcttctctgtgctgagtatcatggtaacaaaaagaaacatcatagcccatgccttcagggtatttgcattgcatatgggggaatgaaagaagtaaa-tgtctat-gatacagtagaatgtatcaaattat----------gagcacaaggcaggaaataatgataaa---tgaatggggtagcttatcaggaaagatattattgagtaggaaata-tttaactgggttttgacacatgagtaggagcttgcagagtggac------------aagatgaaacattccaagaagttgaagcagTTTCAGCAAGCTTAGCAAATT-GCATTCTTTATCGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaatcttggacaagtatttt--------gtttgttt--gttttagctttttaatgcttcttttgagtattctgctaaaagagta-ataagaatgtacactactttata-aggttgtaataaagagtgaa-aatgaaataaatataagatatttagcacaatctctggtacatagtcaatacttcacaagtA--ATATACATACACTGAGGGTGTGTACAACTTATCCACATACTATACATTTTTATTTTAGTTCTTTAACGAACATAATTGTAATT------------CTTTTCATTTTT-CCAAATTCTGTTTCCTATGCA---TGTGTCTTATAAAAGTACCTGCAGGAAAAAGAGGAGGGTTTATCTGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGAATATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAACAAAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53213967 1088 + 80904711 tctcaccctctcttttcccttccacaatgtgatgacacagtaT-TCCTGGTTATCTATAACT----AAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCC-GCATATACTGTTTATCAGGGGACATGTTACTTACCATAGAAAT-----TAGTTTTCCTAAAATTAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTCTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCttcattcactcaataaacatttaccaccagtgttctctgtgctgagtatcatggtaacaaaaagaaatgtcataggccatgccttcagggtatttgcattgcatatgg-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggtgtagcttatcaggaaaaa-attattgaggaggaaatattttaact-ggttttgacacatgagtaggagtttgcagaatgaac----a---aaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCTCTTTCTTGGCTACCCTAAGACATATTAGGcttactttctctttaatcttcgacacgttttttgtttgtttgtttgttt--gttttagctttttaatgcttcttttgcgtactctgctaaaagagta-ataagaatgtacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctggtacgtagtcaaaacttcacaagta--ataTACATACCTTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTATTGTAGTTGTTTAATGAACATAATTGTGATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATACAAGTACCCGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTATAAACATTGTCTACATATAACAAAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52778470 1089 + 80997621 tctcaccctctcttttcccttccacaatgtgatgacacagtaT-TCCTGGTTATCTATAACT----AAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCC-GCATATACTGTTTATCAGGGGACATGTTACTTACCATAGAAAT-----TAGTTTTCCTAAAATTAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTCTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCttcattcactcaataaacatttaccaccagtgttctctgtgctgagtatcatggtaacaaaaagaaatgtcataggccatgccttcagggtatttgcattgcatatgg-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggtgtagcttatcaggaaaaa-attattgaggaggaaatattttaact-ggttttgacacatgagtaggagtttgcagaatgaac----a---aaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCTCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTCGACACgttttttgtttgtttgtttgttt--gttttagctttttaatgcttcttttgcgtagtctgctaaaagagtgtataagaatgtacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctggtacatagtcaaaacttcacaagtA--ATATACATACCTTGAGGGTGTGTGGAACTTATCCACATACTATACATTTTTATTGTAGTTGTTTAATGAACATAATTGTGATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATACAAGTACCCGCAGGAAAAAGATGAGAGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTATAAACATTGTCTACATATAACAAAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47782032 1098 + 74645514 tctcaccctctcctttcccttccacaATGTGATGACACAGTAT-TCCTGGTTATCTATAACC----AAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCC-ACATATACTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTAAAATGAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTTTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCTTcattcactcaataaacatttaccaCCAGTGTTCTCTGTGCTGAGTATCAtggtaaaaaaaagaaatgtcatagGCCATGCCTTCAGGGTATTTGCATTGCATATGG-GGAATGACAGAAGTAAA-TGACTAT-GATACAGTAGAATGTATCAAATTAT----------GAGCACAAGGGAGGAAATAATGATAAA---TGTATGGTGTAGCTTATCAGGAAAAATATTATTGAGGAGGAAATATTTTAACT-GGTTTTGACACATGAGTAGGAGTTTgcagaatgaacaaaaa---aaaaaaaatgaaacattccaAGAAGATGAAACAGTTTCAGCAAGTTTGgcaaatt-ttattctttaccGCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTGGACacgttttttgtttatttgtttgttt--gttttagctttttaatgcttcttttgCGTACTCTGCTAAAAGAGTA-ATAAGAATGTACACTACTTTATA-AGGTTGTATTAAagagtgaa-aatgaaataaatataagatgTTTAGCACAATGTCTGGTACATAGTCAAAACTTCACAAGTA--ATATACATACCTTGAGGGTGTATGGAACTTATCCACAtactatacatttttattgtagtTGTTTAATGAACATAATTgtaatt------------cctttcatttttgcCAAATTCTATTTCTTATACA---TGTGTCTTATACAAGTACCTGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAATAGAATGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTCTAAACATTGTTTACATATAACAAAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10045432 1097 - 75148670 tcttaccctctcttttcccttccacaatgtgatgacacagtaT-TCCTGGTTATCTATAACC----AAGTCTTATTCTATGAATGGAATCCCAACTTCCACAACTTTCC-ACATATACTATTTATCAGGGGACATGTTACTTACCATAGAAATAAGTGTAGTTTTCCTAAAATGAAACTCTGATC----------TCCTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATA-TATCCAT----TTTTAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCGttcattcactcaataaacatttaccaccagttttctctgtgctgagtatcatggtaacgaaaagaaacatcgtaggccatgccttcagggtatttgcattgcatatgc-ggaatgacagaagtaaa-tgactat-gatacagtagaatgtatcaaattat----------gagcacaagggaggaaataatgataaa---tgtatggggtagcttatcaggaaaactattattgaggaggaaatattttaact-ggttttgacacatgagtaggagtttgcagaatgaac----acgcaaaaaaaatgaaacattccaagaagatgaaacagTTTCAGCAAGTTTGGCAAATT-TTATTCTTTACCGCTTTCTTGGCTACCCTAAGACATATTAGGCTTACTTTCTCTTTAATCTTGGACAAgttttttgtttgttggtttgttt--gttttagctttttaatgcttcttttgcatactctgctaaaagagta-ataagaacatacactactttata-aggttgtattaaagagtgaa-aatgaaataaatataagatgtttagcacaatgtctgatacatagtcaaaacttcacaagtA--ATATACATACCTTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTGTTGTAGTTGCTTAATGAACATAATTGTAATT------------CCTTTCATTTTTGCCAAATTCTGTTTCTTATACA---TGTGTCTTATCTAAGTACCTGCAGGAAAAAGATGAGGGTTTATCCGTTCTATACCCA-GAGTACCCAACAGAAAGTCTTGGATGCACATTATTG-------AAGGCTTAATAATTCTAAATATTGTTTACATATAACAAAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112928202 1031 + 159171411 tctcaccctctcttttcccttccacaatgggatgacATGGTAT-TCCTGGTTATCTATAAAC----ATGTCTCATTCTATAAATGGAATCCTAACTTCCACAACTTTCC-ACATATGCTATTTA-CTGGGGACACGTTACTTACCATATAAGTAAGT-TTGTTTTCCAGAAATGAAACTCTGATC----------TCTTTGTTTG------------------------GAAATCAAAAGATA-TATACAT----TTTGAAAGGAC-CCTATATTCTTCTATGTCACCAA-AAAGCCTTCATTGACTCAACAAACA-TTAACACCAGTGTCCTCCATGCTGAGTATCATGGTAACAAGAATAAATGCCATAGCCCACGCC--------------------CATGGAGGAATGTCAGGAGTAAA-TGATTATAAATAGACTAGAATGTGTCAAATTAT----------GAGCACAAGACAGGAAATAATGATACA---TTAATGGGGTAGCTTAtcaggaaaggtattactgaggaggaaatattttaaccgggttttgac--atgagtaggagtttgcagagtggac--------aaaaaagaagaaacattccaagaagatgaaacagtttcagcaagccttgTAAATT-TTATGCTCTACCCCTTTCTTAGCTACACTAAGACATATTAAGCTTACCTTCTTTTTAATCTTGGACACTTTTTTT-----------TGTTT--CTTTTAGCTTTTTAATGCTTCTTTTGAGTGTtctgctaaaagatta-ataagaatgtaccctaccttata-cagttgaattaaagagtgaa-aatgaaataaatataagatatttggcacaatacctggtacacagacaatacttcacaagta--ataTACATACACTGAGGGTGTATGGAACTTATCCACATACTATAGATTTTGATTTTAGCTGTCTAAGAAAAATAATTGTAATT------------TTTTTCATTTTTGCCAAATTCTGTTTCCTATGCC---TTTATCTTATAGAAGTACTTGCAGGAAAATGATGAGGGTTTATCTGTTCTACACACA-GAGTGTCCATTAGAATATCTCAGATGAATATTATTG-------AAGGCTTAATACCTTTAAATATTGTTTACATGTAA----- i calJac3.chr5 C 0 C 0 s canFam3.chr9 21602424 1058 + 61074082 TCTCACAC---CTTTATCC--CAATTATGTGATGATACAGTATCTACTTTCTTTGCATAAATTCAAGAATATCATTTTAGCAGTAGACTATTATTTTTCTTTACCCTCCTACACATACCATCC------GAACAAGTCATTTACTCCATCAGAGG----------CCAAAAATAAACCCCCATTCAATCATATCACCATTGTCTG-AATATTCTTTTTTCTTTTCTCCA----TCCATATATATTATCTATAGTATGATAAAGGGTGAGTAAATGCA-CTATGTTTTCAATAAATCCCAcattcatttaattaacattcattcagagtaat-----tgctaggcaccatgtttgtatatatgaataagacagtc--tggcctcatggagtatatagaaggactggaggaa-aaaagatataagccaattat-gttagagtgtgataccttatatcacaggtatcttggagcaaaag---ggaaagaaagattcattttgaatggggtaga-tgtcaagaaagacattagaaatgagttgatatccagactagacatttatatatgagcaagagttagttaaattgac--------aagggagaaagcacattaacacaa-atgaaacagtatgaggaaggacatggGATTATTACTCCTCATAAGTCT-TTGAATATTCTAGGAAAGA--------ACCATCTTCCTTATTGACTACATGATTtca--------atctatctaagcctcagttacctcatgt-----------------ctgaagaatta-agaaaaatcctgaccacctcttagaagcccctgtgaagtataaataaggtaacaattacagaagactcag-aaaattcctgacacacaacaggcac-tcaaaaata--gta--------------attttTAGCATTATCTCATATTTCATA-------AGTGTATACATTTAA-ATACATAATTGTTATTTATCACACAATGTTCTACATGCTTTCCAAACCC--CTACATATGTGTTCTTTGTCTTATTGAAGTGCCTATAGGACACAAATTAAAGCTTAACTCCTTAGATCTCATTTATATCAAGCAAAATACCTCAAACATAACTTTTTGAGAGACAAAAGCTCAGAA--TATAAATATTCAACACACATATTCAAT i canFam3.chr9 T 3367 I 114 e mm10.chr11 99635058 7702 + 122082543 T a score=23940.000000 s hg38.chr17_JH159146v1_alt 254305 9 + 278131 GCTTTTGTC s panTro4.chr17 66375920 9 - 82630442 GCTTTTGTC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24898078 9 - 73212453 GCTTTTGTC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107034 9 - 81552678 GCTTTTGTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215055 9 + 80904711 GCTTTTGTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52779559 9 + 80997621 GCTTTTGTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783130 9 + 74645514 GCTTTTGTC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10046529 9 - 75148670 GCTTTTGTC i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21603482 114 + 61074082 I e mm10.chr11 99635058 7702 + 122082543 T e calJac3.chr5 112929233 0 + 159171411 C a score=236345.000000 s hg38.chr17_JH159146v1_alt 254314 89 + 278131 AATG-AAAATCCATCATGCAGTTTTGATGATCAAAGG--------TAAATCAAAACTTCCTACTCCAAATGCCTATGCTGTAAGACATACAG--AAAAA-T s panTro4.chr17 66375929 89 - 82630442 AATG-AAAATCCATCATGCAATTTTGATGATGAAAGA--------TAAATCAAAACTTCCTACTCCAAATGCCTATACTGTAAGACATACAG--AAAAA-T i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24898087 90 - 73212453 AATGAAAAATCCATCATGCAATTTTGATGATCAAAGA--------TAAATCAAAACTTCCTACTCCTAATGCCTATACTGTGAGACATACAG--AAAAA-T i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107043 90 - 81552678 AATGAAAAATCCATCATGCAATTTTGATGATCAAAGA--------TAAATCAAAACTTCCTACTCTTAATGCCTATACTGTAAGACATCCAG--AAAAA-T i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215064 85 + 80904711 AAATAGAAATTCATCATGCAATTTTGATGATCAAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATATAC--AAAAA-T i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52779568 85 + 80997621 AAATAAAAATTCATCATGCAATTTTGATGATCAAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATATAC--AAAAA-T i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783139 85 + 74645514 AAAGAAAAATTCATCATGCAATTTTGATGATCAAAGA--------T-----AAAACTTCCTACTCCTAATGCCTATACTGTAAGACATatac--aaaaa-t i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10046538 90 - 75148670 AATGAAAAATTCATCATGCAATTTTGATGATGAAAGA--------TAAATCAAAACTTCCTACTTCTAGTGCCTATACTGTAAGACATACAG--AAAAA-T i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112929233 79 + 159171411 ---------------------TTTTGATGATCAAAGAAGTTTTGCTAAATCAAAACTTCCTACTCTTAATGCCTATACTGTAAGACATACAGAAAAAAA-T i calJac3.chr5 C 0 C 0 s mm10.chr11 22453628 90 - 122082543 -AAAAAAAATCTACTGTGCAGTTTCATGATTAAAAGA--------TGAATAAAATTTCCCCACTCTTAATCGTTCTTCAGAAAGACATACAA--AAAAACT i mm10.chr11 T 2857 C 0 e canFam3.chr9 21603482 114 + 61074082 I a score=2456801.000000 s hg38.chr17_JH159146v1_alt 254403 726 + 278131 GTGTTTTTACTCATTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATGAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTATAGATGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTATTTGACAACAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAG-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTC----------------TCTCTTTTGGAGTATTTAAGTAGAAGCA-CACAATTATGTAAT----------TACATGATTAAGTTTTCCACG-AGG-TAAATAAT---AAGGAAATAATGACGTGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACCCAAGAACTTCACTCTCTTGAAAACCCACCCAGATCCTCCCCGTTCTGACACCATGGTCAGCTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC s panTro4.chr17 66376018 724 - 82630442 GTGTTTTTACTCATTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCATACACGGAATC--AGTCGTCTTCATTATAGATGGG---------ACATCCTTCTCACGA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTATTTGACAATAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAATGCTTTGTAAAAGACACTGCAG-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTC----------------TCTCTTTTGGAGTATTTAAGTAGAAACA-CACAATTATGTAAT----------TACATGATTAAGTTTTCCACG-AGG-TAAATAAT---AAGGAAATAATGACGTGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACCCAAGAACTTCACTCTCTTGGAAACCCACCCAGATCCTCCCCGTTCTGACACCATGGTCAGCTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24898177 729 - 73212453 GTGTTTTTACTCCTTAAAAGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGACTGAGATCTGACACAGAGTTTATAACTTCCTTGAGATCT------------GACCATCTCCCCAACCATTCAAGAAGCATACACGGAATCAGAGTCATTTTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATGTCATCTGACCAGGACATTATTTGACAACAAAAGACACA-TTCACATTATAAAAATTGT-CCCCCATG-ATTTGCAGAGAGCAATCTACAGGTAGGAGGTAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCCTGTGACCAGTGCTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTC----------------TCTCTTTTGGAGTATTTAACTTGAAACA-CACAATTATGTAAT----------TACATGACTAAGTTTTCCAGT-AGG-TAAATAATAACAAGGAAATAATGACGTGGTGGCCATG--------GGCCTTCAGCAGGGTATAAAGGAGGCAATGGACCCAGAAGACTTCCAAACCCAAGAATTTCACTCTCTTGGAAACCCACCCAGATCCTCCCCTTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107133 729 - 81552678 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGGAGTGGTGGAATGAGATCTGACACAGTGTTTATAACTTCCTTGGGATCT------------GAGCATCTCCCCAGCCATTCAAGAAGCACACATGGAATCAGAGTCATCTTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAATTCCTTTCCAACATTTCATCTGACCAGGACATTCTTTGACAACAAAAGACACA-TTTACATTGTAAAAATTGT-CCCCCATG-ATTTGCTGAGAGTAATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGGGTCATGTGACCAGTGCTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGCATTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTC----------------TCTCATTTGGAGTATTTAACTAGAAACA-CACAATTATGTAAT----------TACATGATTAAGTTTTCCACG-TGG-TAAATAATAACAAGGAAATAATGACGTGATGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACCTCCAAACCCAAGAACTTCACTCTCTTGGAAACCCACCCAGATCCTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215149 745 + 80904711 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGGGATCT------------GACCATCTTCTCAACCGTTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTACAGGTGGG---------ACATCCTTCTCCCAA-ATGAGTCCTTCCTTCTAACTCCTTTCCGACATCTCATCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-GGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTTTGAATATTTAAATGGGTTAGTTTTGGAGTATTTAACTAGAAACA-CACAATGATGTAAT----------TACATGATTAAGTTTTCCACG-AGG-TAAATAATAACAAGGAAATAATGACGTGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATCCTCCCCATTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52779653 745 + 80997621 GTGTTTTTACTCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATACCTTCCTTGGGATCT------------GACCGTCTCCTCAACCGTTCAAGAAGCACACACGGAATCAGAGTCATCTTCATTACAGGTGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCTAACTCCTTTCCGACATCTCATCTGACCAGGGCATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-GGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTTTGAATATTTAAATGGGTTAGTTTTGGAGTATTTAACTAGAAACA-CACAATGATGTAAT----------TACATGATTAAGTTTTCCACG-AGG-TAAATAATAACAAGGAAATAATGACGTGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATCCTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783224 745 + 74645514 gtgtttttactCCTTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACTGAGTTTATAACTTCCTTGGGATCT------------GACCATCTCCTCAACCGTTCAAGAAGCATACACGGAATCAGAGTCATCTTCATTACAGATGGG---------ACATCCTTCTCCCGA-ATGAGTCCTTCCTTCGAACTCCTTTCCGACATCTCATCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTCACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCTATCTACAGGTAGGAGGGAGAATCACATTT-AGAA-ATAAAGTGTC--AGAGTCATGTGTCCAGCGGTTTGTAAAAGACACTGCAT-AGACCAGGGACAAAGG------------TGACCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGAAACACAGG------AGCACAGCAGGAAAAGGAAATGGGTTATTTTTGGAGTATTTAAATGGGTTAGTTTTGGAGTATTTAACTAGAAACA-CACAATGATGTAAT----------TACATGATTAAGTTTTCCACG-AGG-TAAATAATAACAAGGAAATAATGACGTGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATGGACCCAGAAGACTTCCAAACACAAGAACTTCAATCTCTTGGAAACCCACCCAGATCCTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCAGTGTGCTCTGACCAGGGCTGTGGCCAAGAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10046628 733 - 75148670 GTGTTTTTACTCCGTAAAGGCAA-TGAGTCATGGC-TAAGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGAGTTTATAACTTCCTTGGGATCT------------GACCATCTCCTCAGCCATTCAAGAAGCATACACGGAATCAGAGTCATCTGCATTACAGATGGG---------ACATCTTTCTCCCAA-ATGAGTCCTTCCTTCTAACTCCTTTCCGAAATCTCACCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTGACATTATAAAAAGTGT-CCCCCATG-ATTTGTAGAGAGCAATCTACAGGTAGGAGGGAGAATCACGTTT-AGAA-ATAAAGTGTC--AGAGTCATGTGACCAGCGGTTTGTAAAAGATACTGCAT-AGACCAGGGACAAAGGTGTTTGTCCCTTTGTCCCCCACTA-AGGAAGAAATATGA--CAAGTGTTTCCAATAGGAACACTGG------AGCACAGCAGGAAAAGG------------------------AAACGGGTTAGTTTTGGAGTATTTAACTAGAAACA-CACAATGATGTAAT----------TACATGATTAAATTTTCCACG-AGG-TAAATAACAACAAGGAAATAATGACATGGTGGCAATG--------GGCCTTCAGCAGGGTATAAAGGAGGCTATAGACCCAGAAGACTTCCAAACACAGGAGCTTCAATCTCTTGGAAACTCACCCAGATCCTCCCCGTTCTGACACCATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGTGGCCAAGAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112929312 741 + 159171411 CTGCATTTACTCTTTAAAGTCAA-TGAGTCATAGC-TATGTACTTTC-ACTTGAAGTGGTGGAATAAGATCTGACACAGGGTTTAGAACTTCCCTGGGATGTGGTCATCTCCAAGACCATCTCCCAGATCATCCAAGAAGCACATATGGGATCAGAGTCATCCTCATTATAGATGGG---------ACATCCTTCTCCCAA-ATGAATCCTTCCTTCTCATTCCTTTCCAACATTTCATCTGACCAGGATGTTCTTTGACAGCAAAAGATGTA-TTTACATTTTAAAAATTGC-CCCATATG-ATTTGCAGAGAGCAATCTACAGTTAAGAGGGAGAGTCACATAT-AAAA-ACAAAATATG--AGAGCCATGTGACCAGTGCTTTGTAAAATACACTGCATAAGGCTAAAGACAAAGG------------TGA-CCCCACTG-ACCAAGAAATATGA--TTCGTGTTTCCAATGGAAACACAGG------AGCACAGCAGGAAAAGGAAATGTGTTATTTTT----------------TCTTTTTAGAAGTATTTAACTAGAAACA-CACAATTATGTAGT----------TACATGATTAAACTTTACAGC-AGG-TAAATAATAACAAGAAAATAATGACGTGATGGCAATG--------GGCCTTCAGCAGGGTATAAAAGGGGCTATGGGCCCAGAAGATTTCCAAACCCAAGAACTTCACTCTCCTGGAAACCCACCAAGATCCTCCAACTTCTGACACCATGGTCGACTCCTGTTGTGGCTCCGTGTGCTCTGACCAGGGCTGCGGCCAAGAC i calJac3.chr5 C 0 C 0 s mm10.chr11 22453718 697 - 122082543 GAGTTTCTATTATTTCTAGGTAGTTGCACCACTGC-CAAGCTCTTCG-ACTTAAGAGACTGGAATGAGATCTGATA----ATTTAGAATGTTCTCAGG-TCT------------GCACATTTCCCAGATCCTCTAAT--GGACACACAAAATCACCATCATTCTCATGAAAGAT-GG---------ACAGTCTCCTTCTAA-ATG-GCCTTTCCTTCTAACTCCTTCT---AATCTCACCTGGGAGGAACACTCCTTGATAGCAAAAGGCATA-CTGGAATTTGTGGAAGAGCATTTCTATG-ATTTTCAAGGA---ATGTACGGATGGAAGGGAATGCCACGTTTAAAAA-ACAAAATGCCAGAGAGTCCTGTGACAAGTTACTTGTA---------GCAA-------------CAGG------------TGA--CCCACTATGGAAAAAAATGCGA--ACAGTGTTTCAGTTGCAAACACAGG------AGC-CATCAGGAAAAAGAAATGTCATGTTTTC----------------TTTCTTTTGGAGTATTTAACTAGAAACATTACAATTATGTAAT----------TAAATAATTAACTTTTCCAAGAAGG-AAAATACTAACAAGGAAATAATGATGTAGTCATATGA--------GGTGTTCAGCGAGGTATAAAAGGGGGCGTGGGGCAAGGAGACTTCCAAACCCAACATCTTCACTCTCTCAGAAACCCACCCAGAATCTCCAC-CTCTGACACAATGGTCAACTCTTGTTGTGGCTCTGTCTGCTCTGAGGAGAGCTGTGGCCAAGGC i mm10.chr11 C 0 n 0 s canFam3.chr9 21603596 723 + 61074082 GTTTTTTTACTGTGTAAAAGTAG-TGAATCATTACATTATAACTTTCAAATCGAATAGATTCAATAAGACAAAAGAGATAG---GTACTTTGCTAGGATTTT------------TTATACCTCACTGACCAT-CATAAAATCCAAA-GGAATCACAGTATTCCCCACTGAACATAAGTGATTGCCCGCCCCCGCCCCCCAAGATGGCTCTTTCACCCTATTTTCCTACCAGCCTTTCATATGACTTGTTAACCTCTTGGC--TAGAAGATTTAGTTGACAT---AAAATCCAT-TCTCAACATATTATCCTGGAGTTAAATACATAAATGAGGATTTAACACTTGT-AAAATCCAAAGAAAT--AATGTCATAGGA-GAGTGTACTTTGGAAGACACATCAG-A---CAAGGAAAAAAA----------------------TA-TGGAAGC----TGATTCACTTGGTTTTAACCAAATCAGATAGCTCACAATACAACAGGAGAAGGAAATGGAGCCTTTTC----------------TATATATAGGTATATTT-ACCAGATAAA-CATAATTATCTAATTTACTAAAACTACATGA-----TTTTCTATT-AGGATAAACAACAAGAAGA-------GTTGTCCTGCCCATGGTCCTAGTGGCCCTCAGCAGGGTATAAAAGTGACAGATGGCAGGGGAGAT---CACACTTGAGAACTTCATTCTTCTGGAAACCCACCCAGAGCCCCCACCCTCTGACACCATGGTCAACTCCTGTTGTGGATCGGTCTGCTCTGACCAGGGCTGTGGCCA---- i canFam3.chr9 I 114 C 0 a score=28944.000000 s hg38.chr17_JH159146v1_alt 255129 15 + 278131 CTCTGTCAGGAG---------------------------------------------------------------------------ACC s panTro4.chr17 66376742 15 - 82630442 CTCTGTCAGGAG---------------------------------------------------------------------------ACC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24898906 15 - 73212453 CTCTGCCAGGAG---------------------------------------------------------------------------ACC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107862 15 - 81552678 CTCTGTCAGGAG---------------------------------------------------------------------------ACT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215894 15 + 80904711 CTCTGCCAGGAG---------------------------------------------------------------------------ACC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780398 15 + 80997621 CTCTGCCAGGAG---------------------------------------------------------------------------ACC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783969 15 + 74645514 CTCTGCCAGGAG---------------------------------------------------------------------------ACC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047361 15 - 75148670 CTCTGCCAGGAG---------------------------------------------------------------------------ACC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930053 90 + 159171411 CTCTGCCAGGAGACCTGCTGCGCTCCCAGCTGCTGTGGGTCCAGCTGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACc i calJac3.chr5 C 0 C 0 s canFam3.chr9 21604319 7 + 61074082 --------GGAG---------------------------------------------------------------------------ACC i canFam3.chr9 C 0 C 0 e mm10.chr11 22454415 0 - 122082543 I a score=407394.000000 s hg38.chr17_JH159146v1_alt 255144 90 + 278131 TGCTGCCGCCCCAGCTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGTTGTGTATCCAGCTGCTGCAGGCCCCAG s panTro4.chr17 66376757 90 - 82630442 TGCTGCCGCCCCAGCTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24898921 90 - 73212453 TGCTGCCGCCCCAGCTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTATCCAGCTGCTGCAGGCCCCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107877 90 - 81552678 TGCTGCCACCCCAACTGCTGTGAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTATCCAGCTGCTGCAGGCCCCGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215909 90 + 80904711 TGCTGCAGCCCAAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780413 90 + 80997621 TGCTGCAGCCCAAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47783984 90 + 74645514 TGCTGCAGCCCCAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGTcccagctgctgtgtgtccagctgctgcaggccccag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047376 90 - 75148670 TGCTGCAGCCCCAACTGCTGTCAGACCACCTGCTGCAGGACCACG------------------------------TGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930143 120 + 159171411 tgctgccgccccagctgctgtcggaccacctgctgcaggaccacctgctgccgccccagctgctgcatctccagttgctgccgccccagctgctgtgtgtccagctgctgcAGGCCCCAG i calJac3.chr5 C 0 C 0 s mm10.chr11 22301954 90 - 122082543 TGCTGCCAGCCCAGCTGCTGCCAGACCACCTGCTGTAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGACCCCAG i mm10.chr11 n 0 n 0 s canFam3.chr9 21604326 90 + 61074082 TGCTGCCGCCCCTCCTGCTGCCAGACCACCTGCTGCAGGACCACC------------------------------TGCTGCCGCCCCAGCTGCTGTGTGTCCAGctgctgccgcccctcc i canFam3.chr9 C 0 C 0 a score=285735.000000 s hg38.chr17_JH159146v1_alt 255234 74 + 278131 ---------------TGCTGCCAGTCTGTGTGCTGCCAACCCACTTGTTCCCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCAC s panTro4.chr17 66376847 74 - 82630442 ---------------TGCTGCCAGTCTGTGTGCTGCCAACCCACTTGCTCCCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899011 74 - 73212453 ---------------TGCTGCCAGTCTGTGTGCTGCCAACCCACTTGCTCCCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48107967 74 - 81552678 ---------------TGCTGCCAATCGGTATGCTGCCAACCCACCTGCTGTCGCCCCAGCTGCTGTCAGACCACCTGTTGCAGGACCAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53215999 74 + 80904711 ---------------TGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGCTGCTGTCAGACCACCTGCTGCAGGACCAC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780503 74 + 80997621 ---------------TGCTGCCAGTCTGTGTGCTGTCAGCCCAGCTGCTGCCGCCCCAGCTGCTGTCAGACCACCTGCTGCAGGACCAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47784074 74 + 74645514 ---------------tgctgccagtctgtgtgctgccagcccacctgctgccgccccagctgctGTCAGACCACCTGCTGCAGGACCAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047466 74 - 75148670 ---------------TGCTGCCAGTCTGTGTGCTGCCAACCCACCTGCTGCCGCCCCAGCTGCTGCCAGACCACCTGCTGCAGGACCAC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930263 74 + 159171411 ---------------TGCTGCCAGTCTGTGTGCTGCCAGCCCACctgctgccgccccagctgctgtcggaccacctgctgcaggaccac i calJac3.chr5 C 0 I 30 s mm10.chr11 22454415 44 - 122082543 ---------------TGCTGCCAG------------------------------CCCAGCTGCTGCCAGACCACCTGCTGTAGGACCAC i mm10.chr11 n 0 C 0 s canFam3.chr9 21604416 89 + 61074082 tgctccggttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgccccacctgttgccagaccac i canFam3.chr9 C 0 C 0 a score=187991.000000 s hg38.chr17_JH159146v1_alt 255308 37 + 278131 CTGCTACCGCCCCAGCTGTTGTGTGTCCAGCTGCTGC s panTro4.chr17 66376921 37 - 82630442 CTGCTACCGCCCCAGCTGTTGTGTATCCAGCTGCTGC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899085 37 - 73212453 CTGCTACCGCCCCAGCTGTTGTGTGTCCAGCTGCTGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108041 37 - 81552678 CTGCTACCGCCCCAGCTGTTGTGTGTCCAGCTGCTGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27645973 37 - 80904711 CTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC i rheMac3.chr16 T 42815 C 0 s macFas5.chr16 52780577 37 + 80997621 CTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47784148 37 + 74645514 CTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047540 37 - 75148670 CTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930367 37 + 159171411 ttgctgccgccccagctgctgtgtgtccagctgctgc i calJac3.chr5 I 30 I 60 s mm10.chr11 22454459 37 - 122082543 CTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21604505 37 + 61074082 ctgctgccgccccagctgctgtgtgtccagctgctgc i canFam3.chr9 C 0 C 0 a score=74645.000000 s hg38.chr17_JH159146v1_alt 255345 38 + 278131 AGGCCCCAGTGCTGCCAGCCTGTGTGCTGCCAACCCAC s panTro4.chr17 66376958 38 - 82630442 AGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAACCCAC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899122 38 - 73212453 AGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAACCCAC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108078 38 - 81552678 AGGCCCCAGTACTGCCAGTCTGTGTGCTGCCAACCCAC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27646010 38 - 80904711 AGACCCCAGTGCTGCCAGACCACCTGCTGCAGGACCAC i rheMac3.chr16 C 0 I 42042 s macFas5.chr16 52780614 38 + 80997621 AGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47784185 38 + 74645514 AGGCCCCAGTGCTGCCAGTCTGTGtgctgtcagcccac i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112930464 38 + 159171411 AGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCAC i calJac3.chr5 I 60 C 0 s mm10.chr11 22454496 6 - 122082543 AGGCCC-------------------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21604542 23 + 61074082 cgcccctcctgct-ccagtt---------ccag----- i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10047577 0 - 75148670 C a score=25749.000000 s hg38.chr17_JH159146v1_alt 255383 11 + 278131 CTGCTGTCGCC s panTro4.chr17 66376996 11 - 82630442 CTGCTGTCGCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899160 11 - 73212453 CTGCTGTCGCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108116 11 - 81552678 CTGCTGTCGCC i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52780652 11 + 80997621 CTGCTGCCGCC i macFas5.chr16 C 0 I 15 s papAnu2.chr16 47784223 11 + 74645514 ctgctgccgcc i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112930502 11 + 159171411 CTGCTGCCGCC i calJac3.chr5 C 0 C 0 s canFam3.chr9 21604565 11 + 61074082 ctgctgtggct i canFam3.chr9 C 0 C 0 e mm10.chr11 22454502 0 - 122082543 C e chlSab2.chr16 10047577 0 - 75148670 C e rheMac3.chr16 27646048 42042 - 80904711 I a score=30635.000000 s hg38.chr17_JH159146v1_alt 255394 49 + 278131 CCAGCTGCTGTGAGACGAC------------------------------CTGCTGCCACCCTAGGTGCTGCATCTCCAG s panTro4.chr17 66377007 49 - 82630442 CCAGCTGCTGTGAGACGAC------------------------------ctgctgccaccctaggtgctgcatctccag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899171 49 - 73212453 CCAGCTGCTGTGAGACGAC------------------------------CTGCGGCCGCCCTAGGtgctgcatctccag i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108127 79 - 81552678 CCAGCTGCTGTCAGACAACCTGCTGCCGCCCCAGGTGCTGCATCTCCAGCTGCTGCCGCCCCAGGTGCTGCATCTCCAG i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 28207967 25 - 80997621 CCAGCTGCTGTCAGACCAC------------------------------CTGCTG------------------------ i macFas5.chr16 I 5878 I 9 s papAnu2.chr16 47784234 19 + 74645514 ccagctgctg------cat------------------------------ctccag------------------------ i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112930513 64 + 159171411 CCAGTTGCTGTCAGACCACCTGCTGCAGGACCAC---------------ctgctgccgccccagctgctgcatctccag i calJac3.chr5 C 0 C 0 s mm10.chr11 22454502 12 - 122082543 --AGCTGCTGTGTG----------------------------------------------------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21604576 49 + 61074082 ccagctgctgcaggcccag------------------------------ctgctgcatctctagctgctgccgcccctc i canFam3.chr9 C 0 C 0 e chlSab2.chr16 10047577 0 - 75148670 C e rheMac3.chr16 27646048 42042 - 80904711 I a score=19861.000000 s hg38.chr17_JH159146v1_alt 255443 7 + 278131 CTGCTGT s panTro4.chr17 66377056 7 - 82630442 ctgctgc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899220 7 - 73212453 ctgctgt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108206 7 - 81552678 CTGCTGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216073 7 + 80904711 ctgctgc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 28208001 7 - 80997621 CTGCTGC i macFas5.chr16 I 9 C 0 s papAnu2.chr16 47784253 7 + 74645514 ctgctgc i papAnu2.chr16 C 0 C 0 s calJac3.chr5 112930577 7 + 159171411 ttgctgc i calJac3.chr5 C 0 C 0 s canFam3.chr9 21604625 7 + 61074082 ctgctcc i canFam3.chr9 C 0 C 0 e mm10.chr11 22454514 0 - 122082543 C e chlSab2.chr16 10047577 0 - 75148670 C a score=351684.000000 s hg38.chr17_JH159146v1_alt 255450 79 + 278131 CGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAAGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCAACTGCTGCCGCC s panTro4.chr17 66377063 79 - 82630442 cgccccagctgctgtgtgtccagctgctgcaagccccagtgctgccagtctgtgtgctgccagcccacctgctgccgcc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899227 79 - 73212453 cgccccagctgctgtgtgtccagctgctgcagaccccagtgctgccagtctgtgtgctgccagcccacctgctgccgcc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108213 79 - 81552678 CGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAAGCCTCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCATCTGCTGCCGCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216080 79 + 80904711 cgccccagctgctgtgtgtccagctgctgcaggccccagtgctgccagtctgtgtgctgccagcccacctgctgccgcc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 28208008 79 - 80997621 CGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAGTGTTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47784260 79 + 74645514 cgccccagctgctgtgtgtccagctgctgcaggccccagtgctgccagtctgtgtgctgccagcccacctgctgccgcc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047577 79 - 75148670 CGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAGTGCTCCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930584 79 + 159171411 cgccccagctgctgtgtgtccagctgctgcaggccccagtgctgctagtctgtgtgctgagagcccatctgctgctgcc i calJac3.chr5 C 0 C 0 s mm10.chr11 22454514 76 - 122082543 ---TCTAGCTGCTGCAGACCCAGTTGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCC i mm10.chr11 C 0 C 0 s canFam3.chr9 21604632 79 + 61074082 agttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctgtggct i canFam3.chr9 C 0 C 0 a score=52071.000000 s hg38.chr17_JH159146v1_alt 255529 15 + 278131 CCAGCTGCAGCATCT s panTro4.chr17 16261542 15 + 82630442 ccagctgcagcatct i panTro4.chr17 I 20157 C 0 s ponAbe2.chr17 24899306 15 - 73212453 ccagctgcagcatct i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108292 15 - 81552678 CCAGCTGCTGCATCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216159 15 + 80904711 ccagctgctgcatct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 28208087 15 - 80997621 CCAGCTGCTGCATCT i macFas5.chr16 C 0 I 56 s papAnu2.chr16 47784339 15 + 74645514 ccagctgctgcATCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047656 15 - 75148670 CCAGCTGCTGCATCT i chlSab2.chr16 C 0 C 0 s mm10.chr11 22454590 15 - 122082543 CCAGTTGCTGCATTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21604711 15 + 61074082 ccagctcctgtggct i canFam3.chr9 C 0 C 0 e calJac3.chr5 112930663 0 + 159171411 C a score=118948.000000 s hg38.chr17_JH159146v1_alt 255544 30 + 278131 CCAGCTGCTGCCGCCCCTC---------------TTGCTGTGAAT s panTro4.chr17 16261557 30 + 82630442 ccagctgctgccgcccctc---------------ttgctgtgaat i panTro4.chr17 C 0 n 0 s ponAbe2.chr17 24899321 30 - 73212453 ccagctgctgccacccctc---------------ttgctgtgaat i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108307 30 - 81552678 CCAGCTGCTGCCGCCCCTC---------------TTGCTGTGAAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216174 30 + 80904711 ccagctgctgccgcccctc---------------ttgctgtgaat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780678 30 + 80997621 CCAGCTGCTGCCGCCCCTC---------------TTGCTGTGAAT i macFas5.chr16 I 15 C 0 s papAnu2.chr16 47784354 30 + 74645514 CCAgctgctgccgcccctc---------------ttgctgtgaat i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047671 30 - 75148670 CCAGCTGCTGCCGCCCCTC---------------TTGCTGTGAAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930663 30 + 159171411 ccagctgctaccgcccctc---------------ttgctctgaat i calJac3.chr5 C 0 C 0 s mm10.chr11 22454605 45 - 122082543 CCAGCTGCTGTCGACCTTCCTGTGGTAGCTCCAGCTGCTGTGGTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21604726 19 + 61074082 ctagctgctgccgcccctc-------------------------- i canFam3.chr9 C 0 C 0 a score=95143.000000 s hg38.chr17_JH159146v1_alt 255574 26 + 278131 CCAGCTGCTGCCGCCCCTGCTGCTGC s panTro4.chr17 66377142 26 - 82630442 ccagctgctgccgcccctgctgctgc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899351 26 - 73212453 ccagctgctgccgcccctgctgctgc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108337 26 - 81552678 CCAGCTGCTGCCACCCCTGCTGCTGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216204 26 + 80904711 ccagctgctgccgcccctgctgctgc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780708 11 + 80997621 CCAGCTGCTGC--------------- i macFas5.chr16 C 0 I 146 s papAnu2.chr16 47784384 26 + 74645514 ccagctgctgccgcccctgctgctgc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047701 26 - 75148670 CCAGCTGCTGCCGCCCCTGCTGCTGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930693 26 + 159171411 ccagttgctgctgcccctgctgccgc i calJac3.chr5 C 0 C 0 s mm10.chr11 22454650 26 - 122082543 CTAgctgctgccgcccctgctgccgc i mm10.chr11 C 0 I 84 s canFam3.chr9 21604745 19 + 61074082 ----ctgctgcccctcctgctgc--- i canFam3.chr9 C 0 C 0 a score=576259.000000 s hg38.chr17_JH159146v1_alt 255600 131 + 278131 GTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCAGCTGCCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-GGCTTATCTCC---- s panTro4.chr17 66377168 131 - 82630442 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGTCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-GGCTCACGTCC---- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899377 131 - 73212453 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAATCTGTGTCATCTCCAGCTGCCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-GGCTCATCTCC---- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108363 131 - 81552678 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCTGCTGAGCCCAC-TGCCCT-GACTCATCTCC---- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216230 131 + 80904711 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCGCC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-GCTTCACCTCC---- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 28208158 131 - 80997621 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCGCC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-GGCTCACCTCC---- i macFas5.chr16 I 56 n 146 s papAnu2.chr16 47784410 131 + 74645514 ctgcGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTgcccccgccccttgtgctgcgcc---tcctcttgctgctgagccccc-tgccct-ggctcacctcc---- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047727 131 - 75148670 CTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCCCCGCCCCTTGTGCTGCACC---TCCTCTTGCTGCTGAGCCCCC-TGCCCT-GGCTAACCTCC---- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930719 132 + 159171411 CTGCGTCCAGTCTGTGGCCAAGTCTCCTGCCACACCACTTGCTATCGTCAAATCTGTGTTATCTCCACCTGCCCCCACCCCATGTGCTGTGCC---TCCTCTTGCTGCTGAGCCTGCTTGCTCT-GGCTCACCTCT---- i calJac3.chr5 C 0 C 0 s mm10.chr11 22454760 135 - 122082543 CTGAGACCAGTCTGTGGTCAGGTCTGCTGCCAAACCACTTGCTACCGCCCCACCTGTGTCATCTCCACCTGCCCCCGCCCCATGTGCTGTGCCACACCCTGCTGCTGCTGAGATCCC-TAATCTAGGCACATCTCC---- i mm10.chr11 I 84 C 0 s canFam3.chr9 21604764 133 + 61074082 cTGCGCCCAGTCTGTGGCCGGGTCTCCTGCCACACTACCTGCTATCGCCCCACCTGTGTCATCTCCACCTGCCCCCGCCCCATGTGCTGTGCC---TCCTCTTCCTGCTGAGCCCCC-TGTCCT-G--TGACCACTATTT i canFam3.chr9 C 0 C 0 a score=1756466.000000 s hg38.chr17_JH159146v1_alt 255731 496 + 278131 CCCTTCACCACTGGCCCACAGATGTAGACCCTTCTACTGTGCTGACCATTAGGAtacaggaagtggggttgatgtcattcaatagaatggaactcatgtttccaatgagccCATCACCATTTCACTGACTCTTTGAGAACATTCTGATTCATTTTAAACTCCCTCCCTTGCTTTCTTTTTCTTCCGGTGGTGGCACCAAATGTG--AATTAATTTGTAATCCACTAGCT-AGAAATTATTCCAATCCTCTAATTTCCTCATT-TTCTTTATCACTTTGAGG-T-ACAGA-TCTTCTTCTCAGTGAGGCAGACATTATCTGCAGGACCAGT----------TTTGTCA----CTGAG----------GTTGCACCCTCAGATCCAGCCGCCCAGTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTTTAATAAAA-TTTCTGTACATAAGAATTCATTGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-GA- s panTro4.chr17 66377299 497 - 82630442 CCCTTCACCACTGGCCCACAGATGTAGACCCTTCTACTGTGCTGACCATTAGGATACATGAAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTCTTTGAGAACATTGTGATTCATTTTAAATTCCCTCCCTTGCTTTCTTTTTCTTCTGGTGGTGGCACCAAATGTG--AATTAATTTGTAATCCACTAGCT-AGAAATTATTCCAATCCTCTAATTTCCTCATT-TTCTTTATCACTTTGAGG-T-ACAGA-TCTTCTTCTCAGTGAGGTAGACATTATCTGCAGGACCAGT----------TTTGTCA----CTGAG----------GTTGCACCCTCAGATCCAGCCGCCCAGTTATATTCTGTG---TTTCTCCTAGCGTGAATTTCTTATGCTTTGTTATATCTCTGCTTTCTAATAAACTTTTCTGTACATAAGAATTCATTGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-GA- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24899508 499 - 73212453 CCCTTCACCACTGGCCCACAGATGTAGACCCTTCTACTGTTCTGACCATTAGGACACATGAAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTCTTTGAGAACATTCTGATTCATTTTAAACTCCCTCCCTTGCTTTCTTTTTCTTCCGGTGGTGGCATCAAATGTG--AATTAATTTGTAATCCACTAGCTAAGAAATTATCCCAATCCTCTAATTTCCTCATT-TTCTTTATCACTTTGAGG-T-ACAGATTCTTCTTCTCAGTGAGGTAGACATTATCTGGAGGACCAGT----------TTTGTCA----CTGAG----------GTTGCACCCTCAGATCCAGCCACCCAGTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAAACATTTCTGCACGTAAGAATTCATTGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-GA- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108494 496 - 81552678 CCCTTCACTACTGGCCCACAGATGTAGACCCTTCTACTTTGCTGACTATTAGGACACATGGAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTGCAATGAGCCCATCACCATTTCACTGACTCTTTGAGAACATTCTGGTTCATTTTAAACTCCCT--CTTGCTTTCTTTTTCTTCCAGTGGTGGCACCAAATGTG--AATTAATTTGTAATCCACTAGCTAATAAATTATTCCAATCCTCTAATTTCCTCATT-TTCTTTATCACTTTGAGG-T-ACCTATTCTTCTTCTCAGTGAGGTAGACATTATCTGCAGGACCAGT----------TTTGTCA----CTGAG----------GTTGCACCCTCAGATCCAGCCACCCAGTTATATTCTGTG----TTCTGCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAAACTTTTCTGCACGTAAGAATTCATTGGTATCATTCTCTGTTGCTTTCATAATTATTTTACTGATTCCCT-GG- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216361 497 + 80904711 CCCTTCACTGCTGGCCCACAGATGCAGACCCTTCTACTATGCTGGCTATTAGGACACATGGAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAGAATATTCTGGTTCATTTTAAGCTCCCTCCCTTGCTTTCTTTTTCTTCCAGTGGTAGCACCAAATAGA--AATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATT-TTCTTTATCACTTTGAGG-T-AGAGATTCTCCTTCTCAGTGAGGTAGACGTTATCTGCAGGATCAGT----------TTTGTCA----CTGAT----------GTTGCACCCTCAGACCCAGGGGCCCAGTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTAGCATCTCTGCTTTCTAATAAACTTTTCTGCACGTAAGAATTCATTGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-AG- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52780865 497 + 80997621 CCCTTCACTGCTGGCCCACAGATGCAGACCCTTCTACTATGCTGGCTATTAGGACACATGGAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAGAATATTCTGGTTCATTTTAAGCTCCCTCCCTTGCTTTCTTTTTCTTCCAGTGGTAGCACCAAATAGA--AATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATT-TTCTTTATCACTTTGAGG-T-AGAGATTCTCCTTCTCAGTGAGGTAGACATTATCTGCAGGATCAGT----------TTTGTCA----CTGAT----------GTTGCACCCTCAGACCCAGGGGCCCAGTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTAGCATCTCTGCTTTCTAATAAACTTTTCTGCACGTAAGAATTCATTGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-AG- i macFas5.chr16 I 146 C 0 s papAnu2.chr16 47784541 497 + 74645514 ccctTCACTGCTGGCCCACAGATACAGACCCTTCTACTGTGCTGGCTATGAGGACACATGGAGTGGGGTTGATGTCATTCAATAGGATGGACCTCATGTTTCCAATGAGCCCATCACCATTTCACTGACTC--TGAGAATATTCTGGTTCATTTTAAGCTCCctcccttgctttctttttcttccagtggTAGCaccaaataga--aattaatttgtaATCCACTAACTAAGAAATTATTCCGATCCtctaatttccttatt-ttctttatcactttgAGG-T-AGAGATTCTCCTTCTCAGTGAGGTAGACATTATCTGCAGGATCAGT----------TTTGTCA----CTGAT----------GTTGCACCCTCAGACCCAGGGGCCCAGTTATATTCTGTG---TTTCTCCTAGTGTGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAAACTTTTCTGCACATAAGAATTCATTGGTATCATTCTCTATtgctttcataattattttactgATTCCCT-AG- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10047858 499 - 75148670 CCCTTCACCGCTGGCCCACAGATGCAGACCCTTCTACTGTGCTGGCTATTAGGACACATGGAGTGGGGTTGATGTCATTCAGTAGGATGGACCTCATGTTTCCAATGAGCCCATCACTATTTCACTGACTCTGTGAGAATATTCTGGTTCATTTTAAGCTCCCTCCCTTGCTTTCTTTTTCTTCCAGTGGTAGCACAAAATAGG--AATTAATTTGTAATCCACTAACTAAGAAATTATTCCAATCCTCTAATTTCCTTATT-TTCTTTACCACTTTGAGG-T-AGAGATTCTCCTTCTCAGTGAGGTAGACATTATCTGCAGGACCGGT----------TTTGTCA----CTGAT----------GTTGCACCCTCAGACCCAGGGGCCCAGTTATATTCTGTG---TTTCTCCTGGCATGAATTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAAACTTTTCTGCACATAAGAATTCATCGGTATCATTCTCTATTGCTTTCATAATTATTTTACTGATTCCCT-AG- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112930851 497 + 159171411 CCCTTCACTGCTGGCCCACAGATGTAGACCCTTGTACTGTGCTAACCATTAGGACACATGGAGTGGGATTGATGTCATTCAATAGGATGGACTTCATGTTTCCAATGAGCCCATTACAATTTCACTGATTCCGTGAGAACATTCTAATTCATTTTAAACTCCCTCCCTTGCTTTCTTTTATTTCCAGTGGTGGCAACAAGTATA--AATTAA-TTGTAATCCACTAGCTATGAAATTATTCCAATCCTCTAAATTCCTCATA-TTCTTTATCACTTTGAGG-CAATAGATTCTCCTTCTCAGTGAGGTAGACATTAAATTCCGGACCAGT----------ATTGCCA----CTGAT----------GTTATGCCCCCAGAACCAGCCATCCAGTTATAT--TGTT---TTCCTCTGAGTGTGACTTTCTTATGCTTTGTTGCATCTCTGCTTTCTAATAAACTTTTCTGCACATAAGAATTCATTGGTATCATCCTCTATTGCTTTCAT-ATCATTTTACTGATTCCCTAGG- i calJac3.chr5 C 0 C 0 s mm10.chr11 22454895 474 - 122082543 -------------ACGTACAGATATGTACCATTCTTGCATGTGAACCCGTAGGACACGTGGAATCTGTTTGGCATCATTTAGCAGGATGGACCACACAATTCTTGTGAG-CCACCATC-TTCCGCAGAATCAGTCAACACCTCCTGGCTCACATTACATTCTCTTGTTTGCTACCATGTCTTTCTAATGTTTGCACTGTGCTGA--AATTAATCTCTAAGTTGTGAGCTAAGAATTCATCCTAGTTCTCCAAAT---GGATT-GACTTTGTAGCTCTAAAT-T-A-------TTCTTCCCAGTAAATAAGACACTTTCTACAGCCTTTGT----------CTTAGCA----TTGAC----------TTTACAACCCCAGACCTGAGGGGCTGGGTCTATTCTGTATGTTTTCCCCTAAAATGAATTTCTTTTATTCTGTTGTTTCTATTCTTTCTAATAAACTTTCTTACATATAAGAATTCATTGGT---ACTGTCTGTGTCTTCCATAACCATTGCACTCAATCATC-GA- i mm10.chr11 C 0 I 412 s canFam3.chr9 21604897 515 + 61074082 CCATTTACCTCTGCCCCACAGATAAAGACCCTTCTTTTGCGCTGAGTGTTAGGACACATGGAGTCTGGTTAACATCATTGAACAGT-TGAGCCTCATGATTCCAGGGATCCCACCACCATCCCATTGACTC----AGTACATTCTGGTTTATGTTAAGCTCCTTCCATTATTATCTTTTCCTTTCAGTATTGGCACCAAATATGTATATTAATTTGTAACCTATCAGCTAAAAAATTATCCCATTCCTCTAAATTTGTCATTCTTCCTTATCACTTTGGGGCT-CTAGATTATCCTTCCTAACAAAATG---ATTATCTGCAACTCCTGTGCCATACTGATTTGACACTCTCTGATCTGAGGTTCAGTTATACCCTAAGACCTGGGGGTCCAATTATGTAT-------TTTCTGAAGGAGTGAATTTCTTATGTCTTGTTGCTTCTCTGCTTT-TAATAAACTTTTCTACACATAAAAATTCACTGGCCTTGTTCTCTATTGTTTTCATGATCATTTTTCTCAATAACT-AGA i canFam3.chr9 C 0 C 0 a score=9666.000000 s hg38.chr17_JH159146v1_alt 256227 3 + 278131 CAA s panTro4.chr17 66377796 3 - 82630442 CAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900007 3 - 73212453 CAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108990 3 - 81552678 CAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216858 3 + 80904711 CAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781362 3 + 80997621 CAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785038 3 + 74645514 CAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048357 3 - 75148670 CAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112931348 3 + 159171411 CTG i calJac3.chr5 C 0 C 0 s canFam3.chr9 21605412 3 + 61074082 CAA i canFam3.chr9 C 0 C 0 e mm10.chr11 22455369 412 - 122082543 I a score=103317.000000 s hg38.chr17_JH159146v1_alt 256230 40 + 278131 TTATATTTTACACAAAGATGCA---------------------------------------------------------------------------------------GGAAAAGCAACCCGTGTT s panTro4.chr17 66377799 40 - 82630442 TTATATTTCACACAAAGACACA---------------------------------------------------------------------------------------GGAAAAGCAACTCGTGTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900010 40 - 73212453 TTTTATTTTACACAAAGACACT---------------------------------------------------------------------------------------GGAAAAGCAACCCATGTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48108993 40 - 81552678 TTATATTTTACAGAAAGACACA---------------------------------------------------------------------------------------GGAAGAGCAACCCATGTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216861 40 + 80904711 TTATATTTTACACAAAGATACA---------------------------------------------------------------------------------------GGAAGAGCAACCCATGTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781365 40 + 80997621 TTATATTTTACACAAAGATACA---------------------------------------------------------------------------------------GGAAGAGCAATCCATGTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785041 40 + 74645514 TTATATTTTACACAAAGATACA---------------------------------------------------------------------------------------GGAAGAGCAACCCATGTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048360 40 - 75148670 TTATATTTTACACAAAGATACA---------------------------------------------------------------------------------------GGAAGAGCAACCCATGTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112931351 40 + 159171411 TTATACTTCACACAAAGACACA---------------------------------------------------------------------------------------GGAAGAGCAACCCATGTT i calJac3.chr5 C 0 C 0 s mm10.chr11 22455781 39 - 122082543 TTACATTTTATATAAATACAGT---------------------------------------------------------------------------------------AGAAATTTAACT-ATATA i mm10.chr11 I 412 C 0 s canFam3.chr9 21605415 126 + 61074082 CTATATTT-ACATGATGATACAACTCATGTTGAAACCACTTCAAggggcacctgggtggctcagtgattgagcatctacctttggctcaagtcgtgatcccaggatcctgggatcgagtcccgcatt i canFam3.chr9 C 0 I 107 a score=478805.000000 s hg38.chr17_JH159146v1_alt 256270 157 + 278131 GAAATCACTTTGAAGATACATGCTATATCGAATATAGATAATTTACGGTATTGGAATAGAAgtgctgtgtgtatatgtgtgtgtatgtgtgtgtgtgtgtgtgCACATGTG-TCTTAATATCCTAAATTAAGACAGTTTTAATTCATACC-TTAGCTCT s panTro4.chr17 66377839 147 - 82630442 GAAATCACTTTGAAGATACATGCTGTATCGAATATAGATAATTTACGGTATTGGAATAGAAATGCtgtgtgtatatgtgtgtgtgtgtgtgtgtgtg----------tgtg-tCTTAATATCCTAAATTAAGACAGATTTAATTCATACC-TTAGCTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900050 154 - 73212453 GAAATCACTTTGAAGATACATGCTATATCGAATATAGATAATTTAAGGTATTGGAATAGAAGTGCtgtgtgtatatgtgtgtgtgtgtgtgtgtg---gtgtgCACATGTG-TCTTAATAGCCTAAATTAAGACAGGTTTAATTCATACC-TTAGCTCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109033 155 - 81552678 GAAATCACTTTGAAGATACATGCTATATTGAATATAGATAATTTAAGGTATTGGAATAGAAgtgttgtgtgtatatgtgtgtgcgtgtgtgtgtat--gtgtgCACATGTG-TCTTAATATCCTAAATTAAGACAGATTTAATTCATGCC-TTAGCTCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53216901 155 + 80904711 GAAATCACTTTGAAGATACATGCTATATAAAATATACATAATTTAAGGTATTGGAATAAAAGTGCtgtgtgtatatgtgtatgtgtgtgtttgtgg--gtgtgCACAGGTG-TTTTAATATCCTAAATTAAGACAGATTTAATTCATGCC-TTAGCTCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781405 155 + 80997621 GAAATCACTTTGAAGATACATGCTATATAAAATATACATAATTTAAGGTATTGGAATAAAAgtgctgtgtgtatatgtgtatgtgtgtgtttgtgg--gtgtgCACAGGTG-TTTTAATATCCTAAATTAAGACAGATTTAATTCATGCC-TTAGCTCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785081 155 + 74645514 GAAATCACTTTGAAGATACATGCTGTAtcaaatatacataatttaagGTATTGGAATAAAAGtgctgtgtgtatatgtgtatgtgtgtgtttgtgg--gtgcgCACAGGTG-TTTTAATATCCTAAATTAAGACAGATTTAATTCATGCC-TTAGCTCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048400 153 - 75148670 GAAATCACTTTGAAGATACATGCTATATCAAATATACATAATTTAAGGTATTGGAATAAAAgtgctgtttgtatatgtg--tgtgtgtgtttgtgg--gtgtgCACAGGTG-TTTTAAGATCCTAAATTAAGACAGATTTAATTCATGCC-TTAGCTCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112931391 138 + 159171411 GAAATCACTTTGAAGATATATGCCATATCACATAAAGATAATTTAAGGCAATGGAATAAAAGTG------------------GTGTGTGTGTGTGA--GTGCACATACATGTTCTTAATGTCCTAAATTAGGAAAGATTTAATTCATGCC-TTGGCTCT i calJac3.chr5 C 0 C 0 s mm10.chr11 22455820 102 - 122082543 TAAATCATTTAAAAGATAAATGCTATGTGATATA-----AACCCACGAAA---------------------------------TGTGTATTTGTAT--------ACATGTG-T---------CTATATTGGGAAAATTTTAACTCACATC-TTTGTTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21605648 143 + 61074082 GAAATCACTTCGAGACTAAGTGCTTTATCAAATATAGATAATTTAGGATATTGGAACAAAGCAGC-------ACATGTATATGTGTATGTGTACAT--------GCATATG-TCTTAATATCCTAAACTGGGACAGACTTAATTCATGTCTTTAGCTCT i canFam3.chr9 I 107 n 107 a score=370208.000000 s hg38.chr17_JH159146v1_alt 256427 120 + 278131 TGA--AACACATTT-TATCTTTAACACATTATATCTCA---TAATACT-ATCGTCCCTGTTTTGAC-AAAAAAGATAAAACCAAATTTCTG-------AAAATTAGACACCAATGAA--AGAAGGGAAATCTTCTAT s panTro4.chr17 66377986 120 - 82630442 TGA--AACACATTT-TATCTTTAACACATTATATCTCA---TAATACT-ATCGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTG-------AAAATTAGACACCAATGAA--AGAAGGGAAATCTTCTAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900204 120 - 73212453 TGA--AACACATTT-TATCTTCAACACATTATATCTCA---TAATACT-ATCATCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTG-------AAAATTAGACACCAATGAA--AGAAGGGAATTCTTCTAT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109188 120 - 81552678 TGG--AACACATTT-TATCTTTAACACATTATATCTCA---TAATACT-ATCGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTG-------AAAATTAGACACCAATGAA--AGAAGGGAAATCTTCTAT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217056 124 + 80904711 TGA--AACACATTT-TATCTTTAACACGTTATATCTAATTGTCATACT-ATTGTCCCTATTTTGACAAAAAAAGATAAAACCAAATTTCTG-------AAAAGTAGACACCAATGAA--AGAAGGGAAATCTTCTAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781560 124 + 80997621 TGA--AACACATTT-TATCTTTAACACGTTATATCTAATTGTCATACT-ATTGTCCCTATTTTGACAAAAAAAGATAAAACCAAATTTCTG-------AAAAGTAGACACCAATGAA--AGAAGGGAAATCTTCTAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785236 124 + 74645514 TGA--AACACATTT-TATCTTTAACACATTATATCTAATTGTCATACT-ATTGTCCCTATTTtgacaaaaaaagataaaaccaaatTTCTG-------AAAAGTAGACACCAACGAA--AGAAGGGAAATCTTCTAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048553 123 - 75148670 TGA--AACACATTT-TATCTTTAACACATTATATCTAATTGTCATACT-ATTGTCCCTATTTTGAC-AAAAAAGATAAAACCAAATTTCTG-------GAAAGTAGACACCAATGAA--AGAAGGGAAATCTTCTAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112931529 120 + 159171411 TGA--AACACATTT-TATCTTTAACATATTACATCTCA---TAATACT-GTTGTCCCTATTTTGAC-AAAAAGGATTAAACCAAATTTCTG-------AAAAGTGGACATCAATGAA--AGAAGGGAAATCTTCTAT i calJac3.chr5 C 0 I 4360 s mm10.chr11 22455922 129 - 122082543 TAATTAAAATACTTATGCCTTTAGTATATGACACCTT----TAATCCCAATCAAATCAATTTT----GTAGAACATAAAAGCAAATTTCTGAGGGAAAAAAAGTACATGCCAGTGAAATAAAAAAAAAATCTTTTAA i mm10.chr11 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I a score=750258.000000 s hg38.chr17_JH159146v1_alt 256547 261 + 278131 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------CATGTACTGAATTCATTTTACTCAAT-AA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTGAGTTCTGCTGA-----------GACAAAAAAGCATATTGAGCTGTAGT----------------TCATCTGGATAGCATGGTATA------TTGCTGACTGTGGTCTCTACGGGTTTACATTATAATTTAAACAACTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGATGAAAATTTCAAGGCTCGCTTTTCTTTTTAAGAA s panTro4.chr17 66378106 261 - 82630442 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------CATGTACTGAATTCATTTCACTCAAT-AA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTGAGTTCGGCTGA-----------GACAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGGTATA------TTGCTGACTGTGGTCTCTATGGGTTTACATTATAATGTAAACAACTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGATGAAACTTTCAAGGCTCACTTTTGTTTTTAAGTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900324 262 - 73212453 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------CATGTACTGAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTGAGTTCTGCTGA-----------GACAAAAGAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGGTATA------TTGCTGACTGTGGTCTCTACGGGTTTACATTATAATTTAAACAACTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGCTGAAAATTTCAAGGCTCACTTTTCTTTTTAAGAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109308 257 - 81552678 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------CATGTACTGAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATAATCAAAAAGTGGGCTTTATTTCCCAGTGAGTTCCGCTGA-----------GACAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATAGTATA------TTGCTGAGTGTGGTCTCTGCGGGTTTACATTATAATTTAAACAACTCCACACTTAACATTTTAATATATATAAACCCAGAAAGGCTGAAAATTTCAAGGCTCACTTTTC-----AAGAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217180 268 + 80904711 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------AATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATTATTAAAAAGTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGAAATGATATCTATTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGAAAGGCTGAAAATTTCAAGACTCACTTTTGTTTTTAAGAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781684 268 + 80997621 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------AATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATTATTAAAAAGTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGAAATGATATCTATTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGCAAGGCTGAAAATTTCAAGACTCACTTTTGTTTTTAAGAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785360 262 + 74645514 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------AATGTACTCAATTCATTTCACTCAATAAA-CAACATTTtggaatttattattaaaaagtggaCTTTATTTCCCAGTGAGTTCTGCtga-----------gaaaaaaaagcatattgAGCTGTATT----------------TCATCTGGATAGCATGGTATA------CTTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTaacatttaaacatatataaaccCAGCAAGGCTGAAAATTTCAAGActcacttttgtttttaagaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048676 262 - 75148670 ----------------------------------------------------------------AAAGAATTT------------------------------------------------------------------------------------------------AATGTACTCAATTCATTTCACTCAATAAA-CAACATTTTGGAATTTATGATTAAAAACTGGACTTTATTTCCCAGTGAGTTCTGCTGA-----------GAAAAAAAAGCATATTGAGCTGTATT----------------TCATCTGGATAGCATGGTATA------CTTCTGACTGTGGTCTCTACAGGTTTATGTTATAATTTAAACATCTCCACACTTAACATTTTAACATATATAAACCCAGCAAGGCTGAAAATTTCAAGACTCACTTTTGTTTTGAAGAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112936009 273 + 159171411 ----------------------------------------------------------------aaagaaTTT------------------------------------------------------------------------------------------------AATGTACTCAATTCCTTTCACTCAATACA-TAACATTTGGGAATTTATAATCAAAAAGTGGTTTTTATTTCTAAGTGAGTTTTTCTCATATTTGCATATGAGAAAAATGCATATTGAGCTGTATT----------------TTGTCTGGATAGTGTGGTGTA------TTTCTGCCTGTGGACTCTAAGGGTTTACCTTACTATTCAAACATCTCCACACATAACATTTTAATATATATAAGCCCAGCAAGGCTGAAAATTTCAAGGCTCACTTTTCTTCTTAAGAA i calJac3.chr5 I 4360 C 0 s mm10.chr11 22456051 434 - 122082543 AAATGCAATGaaccaggtgtggtactgaatgcctttaactccattattcagaaaagctgaggcagaagaatcttaagttgaaggtaaccaagctacgtaataagtattaggccaggcagcgctagatggcaaggccatgtctcaaTTAATTAATAGACTAATATAAAACAATGTCCTCAACTTATTTCAATTAAAGAATCAGCATGTGAAAATTTATAATCACAAAGTGACTTGTATTACTCATGGAATTGCACTCT-----------GA-AGAAATGCGTATTTTGTTGTGTTTTCAAGGGCCTGTGACTCATCTGGATAGTGTGGAATG------TTTCAGAACGTGGTCTTTTGGAGTCT---TTGTACCTCAAGCATTTCCATTCTTAATATTTTATCAGAAACATACCT-TCAAGACTGGAATTCTTAAGCTCCTTTTCTCTTTTTGAGGA i mm10.chr11 C 0 n 0 e canFam3.chr9 21605791 107 + 61074082 I a score=636862.000000 s hg38.chr17_JH159146v1_alt 256808 219 + 278131 TTATTTTATTGGAATTAGTT--CAGTCTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTTCCAAGAGAGGTGCCTTCATTTGAATCTGAAAGAATATGGTAAGTGACTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAATGGCCT--TAAGCTATTGAGCCAATCAAGTTTA s panTro4.chr17 66378367 219 - 82630442 TTATTTTATTGGAATTAGTT--CAGTCTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTTCCAAGAGAGGTGCCTTCATTTGAATCTGAAAGAATATGGTAAGTGACTATAACTTGGCATTCTAGTAGGAGCACTTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAATGGCCT--TAAGCTATTGAGCCAATCAAGTTTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900586 219 - 73212453 TTATTTTATTGGAATTAGTT--CAGTCTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATCTCCAAGAGAGGTGCCTTCATTTGAATCTGAAAGAATATAGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAATGGCCT--TAAGCTATTGAGCCAATCAAGTTTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109565 221 - 81552678 TTATTTTATTGGAATTAGTTCACAGCCTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATGTCCAACAGAGGTGCCTTCATTTGAATCTGAAAGAATATGGCAAATGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGAATATTACCAGCTCTGAAGTGGCCC--TAAGCTATTGAGCCAATCAAGTTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217448 223 + 80904711 TCATTTTATTGGAATTAGTTCATAGCTTTGAGCAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTGTAGTAGGAGAACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52781952 223 + 80997621 TCATTTTATTGGAATTAGTTCATAGCTTTGAGCAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTGTAGTAGGAGAACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785622 223 + 74645514 ttattttaatggaATTAGTTCATAGCTTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAGTTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATATCGTAAGTGATTATAACTTGGCATTCTAGTAGGAGCACCTGCTCTtgatgtttttacttttatttgactATTATCAGCTCTGAAGTGACCCTATAAGCTATTGAGCCAATCAAATTTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10048938 221 - 75148670 TCATTTTATTGGAATTAGTTCATAGCTTTGAGTAGGTCGCAGCTGGGGTGCATATCCTAATTAGAATTCCCAAGAGTGGTGCCTTCATTTGAATCTGAAGTAATGTCGTAAGTGATTATAACTTGGCATTCTAGTGGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGACTATTATCAGCTCTGAAGTGACCC--TAAGCTATTGAGCCAATCAAGTTTA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112936282 219 + 159171411 TTATTTTATTGGAATTAGTTCATAGCTTTGAGTAGTTCTCAGCTGGGG-GCATATTCTAATTGGAATCTCCAAGAGTGGTTCCTTCATTTGAATCTAAAAGAGTACCAT-AGTGATTATAACATGGCATTCTAGTGGGAGCACCTGCTCTTGATGTTTTTACTTTTATTTGCCTTTGATCAGCTCTGAAGTTACCC--TAAGTTATTGAACCAAtcaaattta i calJac3.chr5 C 0 I 5139 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I a score=104407.000000 s hg38.chr17_JH159146v1_alt 257027 65 + 278131 AGATGATTTGTTCAGATATGTTCAAATATGAAAAATAAGCTTCATATTTTTTCAGATGCCTTAAG s panTro4.chr17 66378586 65 - 82630442 AGATGATTTGTTCAGGTAAGTTCAAATATGAAAAATAAGCTTCATATTTTTTCAGATGCCTTAAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900805 55 - 73212453 AGATGATTTGTTCAGG----------TATCATTGATAAGCTTCATATTTTTTCAGATGCCTTAAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109786 55 - 81552678 AGATGATTTCTTCAGA----------TATCATTGATAAGCTTCACATTTTTTCAGATGCTTTAAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217671 54 + 80904711 AGATGATTTGTTCAGA----------TATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52782175 54 + 80997621 AGATGATTTGTTCAGA----------TATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47785845 54 + 74645514 AGATGATTTGTTCAGA----------TATCATTGAT-AGCTTCACATTTTTTCTGAGGCCTTAAG i papAnu2.chr16 C 0 I 1140 s chlSab2.chr16 10049159 55 - 75148670 AGATGATTTGTTCAGA----------TATCATTGATAAGATTCACATTTTTTCTGATGTCTTAAG i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I a score=644871.000000 s hg38.chr17_JH159146v1_alt 257092 274 + 278131 AAAAATGTTGTCCAGATCTCAGTCATAGAGTTATGATGCCTTCTTAAACATGAGGCAGGATAAATAAGGTTAGGAGGCtgtgaaagtaaaataaatattggggtccccaaatcactaagctaaagggaaaaggcaaactcggaactgcttaggacaaacttgcctctcattctattcaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaaggctaatcagaaactcaaaagaaggcaaccatttgtctctt s panTro4.chr17 66378651 274 - 82630442 AAAAATGTTGCCCAGATCTCAGTCATAGAGTTATGATGCCTTCTTAAACATGAGGCAGGATAAATAAGGTTAGGAGGCtgtgaaagtaaaataaatattggggcccccaaatcactaagctaaagggaaaaggcaaactcggaactgcttaggacaaacttgcctctcattctatgcaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaaggctaatcagaaactcaaaagaaagcaaccatttgtccctt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24900860 274 - 73212453 AAAAATGTTGCCCAGATCTTAATCATAGAGTTATGATGCCTTCTTAAACATGAGGCAGGATAAATAAGGTTAGGAGGCtgtgaaaggaaaataaatattggggcccccaaatcactaagctaaagggaaaaggcaaacggggaaccgcttaggacaaacctgcctctcattctattcaaagtcacccctctgctcactaagataaatgcatatctgattgcctccttgggaaaggctaatcagaaactcaaaagaaagcaagcatttgtctctt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48109841 274 - 81552678 AAAAATGTTGCTCAGATCTTAATCATAGAGTTATGATGCCTTCTTAAACATGAGGGAGGATAAATAAGGTTAGAAGGCtgtgaaaggaaaataaatattggggaccccaaatcactaagctatagggaaaaggcaaactgggaactgcttaggacaaacctgcctctcattctattcaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttggaaaaggctaatcagaaactcaaaagaaagcaactatttgtctctt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53217725 273 + 80904711 -AAAATGTTGCCCAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGAAGCtgtgaaaggaaaataaatatcgggtcccccaaatcactaagctaaagggaaaaggcaagctgggaactatttcgggcacacctgcctctcattctacttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaagactaaccagaaactcaaaagaatgcaagtatttgtctctt i rheMac3.chr16 C 0 I 1538 s macFas5.chr16 52782229 273 + 80997621 -AAAATGTTGCCCAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGAAGCtgtgaaaggaaaataaatatcggggcccccaaatcactaagctaaagggaaaaggcaagctgggaactatttcgggcacacctgcctctcattctacttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttgggaaagactaaccagaaactcaaaagaatgcaagtatttgtctctt i macFas5.chr16 C 0 I 1726 s papAnu2.chr16 47787039 274 + 74645514 gaaaatgttgcccAGATGTTAATCACAGAGTTATGATGCCTTTTTAAACATGAGGCAGGATAAATAAGGTTAGGaagctgtgaaaggaaaataaatatcggggcccccaaatcactaagctaaagggaaaaggcAAGCTGGGAACTATTTCGGGCACACCTGCCTCTCATTCTACttaaagtcacccctctgctcactgagataaatgcatatctgattgcctccttggGAAAGACTaaccagaaactcaaaagaatgcaagtatttgtctctt i papAnu2.chr16 I 1140 I 1730 s chlSab2.chr16 10049214 272 - 75148670 -AAAATGTTGCCCAGATGTTAATCACAGAGTTATGACACCTTCTTAAACATGAGGCAGGATAAATAAAGTTAGGAAGCtgtgaaaggaaaagaaatattgggg-ccccaaatcactaagctaaagggaaaaggcaagctgggaactgcttagggcaaacctgcctctcattctgttcaaagtcacccctctgctcactgagataaatgcatacctgattgcctccttgggaaaggctaatctgaaactcaaaagaatgcaagcatttgtctctt i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I a score=1820.000000 s hg38.chr17_JH159146v1_alt 257366 2 + 278131 at s panTro4.chr17 66378925 2 - 82630442 at i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24901134 2 - 73212453 at i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48110115 2 - 81552678 at i nomLeu3.chr19 C 0 C 0 s chlSab2.chr16 10049486 2 - 75148670 at i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e papAnu2.chr16 47787313 1730 + 74645514 I e macFas5.chr16 52782502 1726 + 80997621 I e rheMac3.chr16 53217998 1538 + 80904711 I a score=3689.000000 s hg38.chr17_JH159146v1_alt 257368 8 + 278131 ataccta-t s panTro4.chr17 66378927 8 - 82630442 ataccta-t i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24901136 8 - 73212453 ataccta-t i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48110117 8 - 81552678 ataccta-t i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52784228 7 + 80997621 attccta-- i macFas5.chr16 I 1726 C 0 s papAnu2.chr16 47789043 7 + 74645514 attccta-- i papAnu2.chr16 I 1730 C 0 s chlSab2.chr16 10049488 8 - 75148670 gtacctat- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e rheMac3.chr16 53217998 1538 + 80904711 I a score=1171206.000000 s hg38.chr17_JH159146v1_alt 257376 504 + 278131 gatctggaagccccctcccagcttcgagttgtcccgcctttgcttcgagttgtcttgccttttctggaccaaatccgtgttcatcttacatatgttgattgatatctcatgtctccctaaaatgtataaaacaaaagtgttatctgaccaccttacacacatgtcatcaggacttcctgaggctgtgtcaccggagcatcctcaaccttagcaaaataaactttctcaattaactgagacctgtctcagattttctgggttaacaTTTtggtaactgtgaaaggattctgagtggagatgcccttgacctttgacgaatatcctgttggtgcctggtaatagcatgagctaactttatggctcaaatcaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctccccaaatttggtgaagaactaaagttcattttgctgtacaactgccccacctatttttgtttttggagttttacttgctta s panTro4.chr17 66378935 504 - 82630442 gatccggaagccccctcccagcttcgagttgtcccgcctttgcttcgagttgtcttgccttttctggaccaaatccgtgttcatcttacatatgttgattgatatctcatgtctccctaaaatgtataaaacaaaagtgttatctgaccaccttacacacatgtcatcaggacttcctgaggctgtgtcaccggagcatcctcaaccttggcaaaatcaactttctcaattaactgagacctgtctcagattttctgggttaacaTTTtggtaactgtgaaaggattctgagtggagatgcccttgacctttgatgaatatcctgttggtgcctggtaatagcatgagctaactttatggctcaaaccaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctccccaaatttggtgaagaactaaagttcattttgttgtacaactgccccatctatttttgtttttggagttttacttgctta i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24901144 504 - 73212453 gatctggaagccccctcccagcttcgagttgtcccgcctttgcttcgagttgtcttgccttttctggaccaaatccgtgttcatcttacatatgttgattggtgtctcatgtctccctaaaatgtataaaacaaaagtgttatctgaccaccttatacacatgtcatcaggacttcctgaggctatgtcactggagcatcctgaaccttggcaaaataaactttctcaattaactgagacctgtctcagattttctgggttATCATTTtggtaattgtgaaaggattctgagtggagatgcacctgacctttgacaaatatcctgttggtgcctggtaatagcatgagctaactttatggctcaaaccaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctcccaaaatttggtgaagaactaaagttcattttgttgtacaactgccccacctttttttgtttttggagttttacttgctta i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48110125 504 - 81552678 gatctggaagccgcctccgagctttgagttgtcccgcctttccttcgagttgtcttgccttttctggaccaaatctgtgttcatcttacatacgttgattgatgtctcatgtctccctaaaatgtataaaacaaaagtgtgatctgacctccttacacacatgtcgtcaggacttcctgaggctgtgttactggagtatcctcaaccttggcaaaataaactttctcagttaactgagatctgtctcagattttcaaggttaacaTTTtggtaattgtgaagggattccaagtggagatgcccctgacctttgacaaatatcctgttggtgactgggaatagcatgagctaactttatggctcaaaccaataggacaatttgctgaggtctgggagcaccctccccaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactgccccacctatttttgtttttggagttttacttgctta i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53219536 503 + 80904711 gatctagaagcccacttccagcttcaagttgtcctgcctttgctttgagttgtcccgccttttctggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaaactgtgaactgaccaccttacacacatgttgtcaggacttcctgaggcagtatcactggagcgtcctcaacctcggcaaaataaactttctaaattaactgagacctgtcccagtttttcagggttcaca-TTtggtaatcatgaagggattctgagtggatatgcccctgacctttgataaatatcctgttggtgcctggtaatagcatgagctaactttatgattcaaaccaataggacaatttgctgaggtctgggagcacccaccgcaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactcccccacctatttttgtttttggagttttatttgctta i rheMac3.chr16 I 1538 C 0 s macFas5.chr16 52784235 503 + 80997621 gatctagaagcccacttccagcttcaagttgtcctgcctttgctttgagttgtcccgccttttctggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaaactgtgaactgaccaccttacacacatgttgtcaggacttcctgaggcagtatcactggagcgtcctcaacctcggcaaaataaactttctaaattaactgagacctgtcccagtttttcagggttcaca-TTtggtaatcatgaagggattctgagtggatatgcccctgacctttgataaatatcctgttggtgcctggtaatagcatgagctaactttatgattcaaaccaataggacaatttgctgaggtctgggagcacccaccgcaaagaatccctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactcccccacctatttttgtttttggagttttacttgctta i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47789050 503 + 74645514 gatctAGAAGCCCACTTCcagcttcaagttgtcctgcctttgctttgagttgtcccgccttttcTGGACCAAATccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaacgaAACTGTGAACTGACCACCTTACacacatgttgtcaggacttcctgaggcagTATCACTGGAGCGTCCTCAACctcggcaaaataaactttctaaattaactgagacctgtcccAGTTTTTCAGGGTTCACA-TTTGGTAATCATGAAGGGATTCTGAGTGGATATGCCCCTGACCTTTGATAAATATCCTGTTGGTGCCTGGTAATAGCATGCGCTAACTTTATGAttcaaaccaataggacaatttgctgaggtctgGGAGCACCCACCGCAAAGAATCcctgatctcccaaaatttggtgaagatctaaagtttattttgctgtacaactccCCCACCTATTTTCGtttttggagttttacttgcttA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10049496 503 - 75148670 gatctggaagccc-ctcccagtttcaaggtgtcctgcctttgcttcgagttgtcccgccttttgcggaccaaatccatgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtgtgaaacaaaactgtgatctgaccaccttacacacatgtcgtcaggacttcctgaggctgtgtcacaggagcgtcctcaacctggggaaaataaactttctaaattaactgggacctgtctcaggttttcagggttcacaTTTtggtaatcatgaagggattctgagtggagatgctcctgacctttgacaaatatcctgttggtgcctagtaagagcatgagctaacttcatggcttaaaccaataggacaatttgctgaggtctgggagcaccctccccagagaatccctgatcttccaaaatttggtaaagatctaaagttcattttgctgtacaactcccccacctatttttgtttttagagttttacttgctta i chlSab2.chr16 C 0 I 782 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I a score=857408.000000 s hg38.chr17_JH159146v1_alt 257880 521 + 278131 cttgccttcct-tataaggaaggcaagatttacttttacttcc-ttataaggaaggcaagatttacttttacttcctttacaaggaaggcaagatttcctgcttccatgatgatgaaaggcatgtagagtttgagctcactcccagcagggaagaccagtttgagtttttttcctgcttctagggtggtagaaagcagccttcagcctgagacccatccctaggtaagtagctgaactggggctttgtctgggctaaagtttaacaaccagctagctgctcttaatttctccttatcattagagtgcttggtaatcctatggttggag-attttgttgtttgttttggtctttctccc-atcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattacgggtaacaaaacctct---------------------ctaatttggctaaaattcattgcagctgcaaaaGAAGA----AAACAAACAAAAAGAACCAAAAACCCATGCACTTGGTTTCTGTGTTTGCTTCCT s panTro4.chr17 66379439 489 - 82630442 tttgc---------------------------------cttcc-ttataaggaaggcaagatttacttttacttcctttacaaggaaggcaagatttcctgtttccatggtgatgaaaggcatgtagagtttgagctcactcccagcagggaagaccagtttgagtttttttcctgcttctagggtggtagaaagcagccttcagcctgagactcatccctaggtaagtagctgaactggggctttgtctgggctaaagtttaacaaccagctagctggtcttaatttctccttatcattagagtgcttggtaatcctatggttggag-attttgttgtttgttttggtctttctccc-atcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattatgggtaacaaaacctct---------------------ctaatttggctaaaattccttgcagctgcaaaaGAAGA----AAACAAACAAAAAGAACCAAAAACCCATGCACTTGGTTTCTGTGTTTGCTTCCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24901648 511 - 73212453 cttgc---------------------------------ctccc-ttataaggaaggcaagatttacttttacttcctttacaaggaaggcgagatttcctgcttccatgatgatgaaaggcatgtagagtttgaggtcactcccagcagggaagaccagtttgagttttcttcctgcttctagggtggtagaaagcagccttcagcctgagacccatccctaggtaagtagctgaactggggctttgtctgggctaaagtttaacaaca----agctggtcttaatttctccttatcattagagtgcttggtgatcctattgttggagttttttgttgtttgttttggtctttctccc-atcagacttgaccaaccctacctgacttggtcaAATCCaagtgagaattcaaaattatgggtaacaaaacctctctaatttggctctaatttagcctaatttggctaaaattccttgcagctgcaaaagaagaaaacaAACAAACAAAAAGAATAAAAAACCCATGCACTTGGTTTCTGTGTTTGCTTCCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48110629 487 - 81552678 cttgc---------------------------------cttcc-ttatgaggaaggcaagatttacttttacttcctttacaaggaaggcaatatttcctgcttccatgatgatgaaaggcatgtagagtttgagctcacccccagcagggaagaccagtttgagtttttttcctgcttctaggatggtagaaggcagccttcagcctgagagccatccctaggtaagtagctgaactggggctttgtctgggCTAAAGTTTAACAGAC----AGATGGTCTTATTTTCTCCTTATCATTAGAGTGCTTGGTGATCCTATTGTTGGAATtttttgttgtttgttttggtctttctcccaatcagacttgaccaactctacctgacttggtcaaatccaagtgagaattcaaaattaagtgtaacaaagcctgt---------------------ctaatttggctaaaattccttgcagctgcaaaaGAAGA----AAACAAACAAAAAGAATCAAAAAACCATGCACTTTGTTTCTGTGTTTGCTTCCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53220039 519 + 80904711 cttgccatcctgtacaaggaaggcaagattagcttttacttcctttataaggaaggcaagatttacttttacttcctttacaaagaaggcaagatttcctgcttccatgatgatgaaaggcatgtagcgtttgagctcactcccagcagggaagaccagttttagtgcttttcctgcttctacggtggtagaaagcagtcttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaacc----tgctggtcttaatttctccttatcattagagtgcttgatgatcctattgctggat-tttttgttggttgtttTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTAcctgacttggtcaaatccaagtgagaattcaaaattattggtaacaaagcctct---------------------ctaatttggccaaaattccttgcagctgcgaaaGAAGA----AAACAAACAAAAAGAACCAAAAAAACATGCACTTGGTTTCTGTGTTTGCTTCCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52784738 519 + 80997621 cttgccatcctgtacaaggaaggcaagattagcttttacttcctttataaggaaggcaagatttacttttacttcctttacaaagaaggcaagatttcctgcttccatgatgatgaaaggcatgtagcgtttgagctcactcccagcagggaagaccagttttagtgcttttcctgcttctacggtggtagaaagcagtcttcagcctgagacccatccctaggtaagtagctgaactggggctttgtcttggctaaagtttaacaacc----tgctggtcttaatttctccttatcattagagtgcttggtgatcctatTGCTGGAT-TTTTTGTTGGTTGTTTTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTAcctgacttggtcaaatccaagtgagaattcaaaattatgggtaacaaagcctct---------------------ctaatttggccaaaattccttgcagctgcgaaaGAAGA----AAACAAACAAAAAGAACCAAAAAAACATGCACTTGGTTTCTGTGTTTGCTTCCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47789553 519 + 74645514 CTTGCCATCCTGTACAAGGAAGGCAAGATTAGCTTTTACTTCCTTTATAAGGAAGGCAAGATTTACTTTTACTTCCTTTACAAAGAAGGCAAGATTTCCTGCTTCCATGATGATGAAAGGCATGTAGCGTTTGAGCTCACTCCCAGCAGGGAAGACCAGTTTTAGTGCTTTTCCTGCTTCTACGGTGGTAGAAAGCAGtcttcagcctgagacccatCCCTAGGTAAGTAGCTGAACTGGGGCTTTGTCTTGGCTAAAGTTTAACAACC----TgctggtcttaatttctccttatcATTAGAGTGCTTGGTGATCCTATTGCTGGAT-TTTTTGTTGGTTGTTTTGGTCTTTCTCCC-ATCAGACTTAACCAAGTCTACCTGACTTGGTCAAATCCAAGTGAGAATTCAAAATTATGGGTAACAAAGCCTCT---------------------CTAATTTGGCCAAAATTCCTTGCAGCTgcgaaagaaga----aaacaaacaaaaagaaccaaaaaaacaTGCACTTGGTTTCTGTGTTTActtcct i papAnu2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e chlSab2.chr16 10049999 782 - 75148670 I a score=76434.000000 s hg38.chr17_JH159146v1_alt 258401 67 + 278131 GTCTTAAAACACGAAtgttctttcgtttacttttcttgcaccatatacctcc-tccccctttgccata s panTro4.chr17 66379928 67 - 82630442 GTCTTAAAAAACGAAtgttctttcgtttacttttcttgcaccatatacctcc-tccccctttgccatt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24902159 68 - 73212453 GTCTTAAAAAATGAACgttcttttgtttacttttcttccaccatatacttccttccccctttgctatc i ponAbe2.chr17 C 0 C 0 s rheMac3.chr16 53220558 68 + 80904711 GTCTTAAAAaacaaatgttcttttatttacttttcttccaccctatacctctttccctctttgccatc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52785257 68 + 80997621 GTCTTAAAAaacaaatgttcttttatttacttttcttccaccctatacctctttccctctttgccatc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47790072 68 + 74645514 gtcttaaaaaacaaatgttcttttatttacttttcttccacCCTATACCGCTTTCCCTCTTTGCCATC i papAnu2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e chlSab2.chr16 10049999 782 - 75148670 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=2207604.000000 s hg38.chr17_JH159146v1_alt 258468 1262 + 278131 tgcagtaccaaaaagtctagagaaggcttctaatgacttgaacccccttaaagaattcagaacaaaggttgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaactctaaacctctattttcctgtattgcatgacctgacctctttggctttgACCTTGTTGTGTATAGTGGTAGATGAGAGCTACAAAGTTAAGGGGTGGCTGAGCAAGGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaatttgtcatttaaagatcctaattctagttcacaaatgcattctaaaggatcttctctgttgctttttctccccaaattaagctcaattcagcttgtctgtgtgcatttgcatgaggaactgaactgttgttttcagtggtgacccactgtggagtcctgcccacaaatggcacatattgatccaccacagaaaacctctaagcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaagcaaagagaatgattccctttcaagcactccataggttttatggcacctgtacttgccagagtttaagtaaaatggaagTAATATGGTCTTTGTGCATATTTACATTaagaaagaaagggcccatgtaaattagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaatcagaaataccatttgatccagcaatcccattacttgttatatacccaaaggaatacaaatcattctactataaagacacaggcacatgtatgtttattgcagcactatttacaagagcaaagacatggaactaacccaaacgcccatcaattatagacttgataaagaaaatgtggtacatatacaccatggaatacgatgcagccataaaacggagtgagatcatgtcctttgtagggacatggatgaagctggaaaccatcatcctcagcaaactaacacagaaacagaataccaaatacaacatgttctcactcatatatgggagttgaactttgagaacacatggacacagagaggagagcaacacatatcaggggctgttggggggtggggaatgagaggagggaatttagaggatgggtcaataggtgcagcaaaccaccaaggcacacatatacctatgtaacaaacctgcacgttctcctgcatgtgtatttca-------------ttttttttagaag---aga s panTro4.chr17 66379995 1258 - 82630442 tgcagtaccaaaaagtctagagaaggcttctaatgacttgaacccccttaaagaattcagaacaaaggttgccactcaccccttttgggatgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaactctaaacctctattttcctgtattgcatgacctgacctctttggctttgACCTTGTTGTGTATAGTGGTAGATGAGAGCTA-AAAGTTAAGGGGTGGCTGAGCACAGTTAACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttg---tttaagggtcctaattctagttcacaaatgcattctaaagggtcttctctgttgctttttctccccaaattaagctcaattcagcttgtctgtgtgcatttgcaggatgaactgaactgttgttttcagtggtgacccactgtggagttc-gcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaagcaaagagaatgatcccctttcaagcactccataggttttatggcacctgtacttgccagagtttaagtaaaatggaagTAATATGGTCTTTGTGCATATTTACATTAAGAAAGAAAGGGCCCatgtaaattagttcaaccattgtggaagacagtatggtgattcctcaaagatctagaatcagaaataccatttgatccagtaatcccattacttgttatatacccaaaggaatacaaatcattctactataaagacacaggcacatgtatgtttattgcagcactatttacaagagcaaagacatggaactaacccaaacgcccatcaattatagacttgataaagaaaatgtggtacatatacaccatggaatacgatgcagccataaaacggagtgagatcatgtcctttgtagggacatggatgaagctggaaaccatcatcctcagcaaactaacacagaaacagaataccaaatacaacatgttcgcactcatatatgggagttgaactttgagaacacatggacacagagaggagagcaacacatatcaggggctgttggggggtggggaatgagaggagggaatttagaggatgggtcaataggtgcagcaaaccaccaaggcacacatatacctctgtaacaaacctgcacgttctcctgcatgtgtatttca------------tttttttttagaag---aga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24902227 1260 - 73212453 tgcagtaccaaaaaatctagagaaggcttctaatgacttgaactctcttaaagaattcagaacaaaggttgccactcaccctttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgttttcctgtattgtatgacctgacctctttggctttgACCTTGTTGTATGTAGTGGTAGATGAGAGCTACAAAGTTAAGGGGCGGCTGAGCATGGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttg---tttaagggtcctaattctagttcagaggtgcattctaaagggtcttctctgttgctttttctccccaaattaagctcgattcagcttgtctgtgtgcatttgcaggaggaactgaactgttgttttcagtggtgacccactgtggagttctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaattgggaaacaaataatctaagaatgaggagaaaacaaggagaatgaccccctttcgagcactccataagttttatggcacctgtacttgccagagtttatgtaaaatggaagTAATATGGTCTTCGTGCACATTTACATTAAG-AAGAAAGAGCCCatgtaaattagttcaaccattgtggaagacagtatggcgattcctcaagaatctagaaccagaaataccatttgacccagcaatcccattacttgggatatacccaaaggaatataaatcattctactataaagacacatgcacatgtatgtttattgcaacactatttacaatagcaaagacatggaaccaacccaaatgcccatcaatgatagactagataaagaaaatgtggtacatatacaccatggaataccatgcagccacaaaacacaatgagatcatgtcctttgcagggacatgggtgaagctggaagccatcatcctgagcaaactagtgcagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaatattgagaacacatggacacagagaggggagcaacacacatcaggggctgtaggggggtggggagtgaggggagggaacttagaggatgggtcaataggtatagcaaaccaccatggcacacgtatacctatgtaacaaacctgcacgttctgctgcacatgtatcccCC-----------TTCTTTTTTAGaag---aga i ponAbe2.chr17 C 0 I 47 s rheMac3.chr16 53220626 1259 + 80904711 tgcagtaccaacaaatctagagaagtcttctaatgacttgaacccccttaaagaattcagaacaaa-gttgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgctttcctgtattgcatgacctgacctctttggctttgACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctatttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtatttgcatgaggaactgaactgttattttcagtggtgacccagtgtggagtcctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatgacccccgttcgagcactccataggttttatggaacctggtcttttcatagtttatgtaaaatggaagtaatcaggtctttgtgcacatttatcttaag-aaaaaggagcccatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcacttgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatacagcatggaatatgatgtagccataaaacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagcaacacacatcaggggttgttgaggggtggagaatgaggggacggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcccgtt----------tttttctttagaag---aga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52785325 1259 + 80997621 tgcagtaccaacaaatctagagaagtcttctaatgacttgaacccccttaaagaattcagaacaaa-gttgccactcaccccttttggggtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaaacctctgctttcctgtattgcatgacctgacctctttggctttgACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctatttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtatttgcatgaggaactgaactgttattttcagtggtgacccagtgtggagtcctgcccacaagcagcacatattgatccaccacagaaaacctctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaacgaggagaaaacaaggagaatgacccccgttcgagcactccataggttttatggaacctggtcttttcatagtttatgtaaaatggaagTAATCAGGTCTTTGTGCACATTTATCTTAAG-AAAAAGGAGCCCatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgactcagcaatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcactcgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatacagcatggaatatgatgtagccataaaacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagcaacacacattaggggttgttgaggggtggagaatgaggggacggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcccgtt----------tttttctttagaag---aga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47790140 1259 + 74645514 TGCAGTACCAACAAATCTAGAGAAGTCTTCTAATGACTTGAACCCCCTTAAAGAATTCAGAACAAA-GTTGCCACTCACCCCttttggggtgttttgttttctttgtggagtTTTAAGAGTCATGGGTAGATTCTTCTTAAGTCTAAACCTCTGCTTTCCTGTATTGCATGACCTGACCTCTTTGGCTTTGACCTTGCTGTGTGTAATAGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGCAGTTTACAAAAAGTGGTCTtggctgttgttttgttttccttctaggAAGTTGCTATTTAAGGATCCTAATTCTAGTTCAGAGATGCATTCTAAAGTGTCTTCTCTGTTGctttttctccccaaattaaGCTCTATTCAGCTtgtctgtgtgtatttgcatGAGGAACTGAACTGTTATTTTCAGTGGTGACCCAGTGTGGAGTCCTGCCCACAAGCAGCACATATTGATCCACCACAGAAAACCTCTAGGCCTCAGCTCAGTTCCtctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatgaCCCCCGTTCGAGCACTCCATAGGTTTTATGGAACCTGGTCTTTTCATAGTTtatgtaaaatggaagtaatcaGGTCTTTGTGCACATTTATCTTAAG-AAAAAGGAGCccatgtaaatcagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattacttggtatatacccaaaggaatataagtcgttctactataaagacataagcactcgtatgtttattgcagcactatttacaatagcaaagacatggaaacaatccaaatgcccatcaattatagactagataaagaaaatgtggtgcacatACAGCATGGAATATGATGTAGCCATAAAacggaatgagatcatgtcctttgcagggccatggattaaactggaagccatcatcctcagcaaactaacacagaaacagaaaaccaaataccacatgttctcactcataaatgggagttgaacattgagaacacatggacacagagagaggagCAACACACATCAGGGGTTGTTGAGGGGTGGAGaatgaggggagggaacttagaggatgggtcaataggtgcagcaaaccaccatggcacacatatacctacgt----aacctgcatgttctgctgcacatgtatcctgtt----------tttttctttagaag---aga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10050781 1275 - 75148670 tgtagtaccaacaaatctagagaaggcttctaatgacttgaacacccttaatgaattcagaacaaaggttgccactcaccccttttggcgtgttttgttttctttgtggagtttcaagagtcatgggtagattcttcttaagtctaagcctctgctttcctgtattggatgacctgacctctttggctttgACATTGTTGTGTATAATGGTAGATGAGAGCCACAAAGTTAAGGGGTGGCTGAGCGTGGTTTACAAAAAGTGGTCTTGGCTgttgttttgttttccttctaggaagttgctgtttaaggatcctaattctagttcagagatgcattctaaagtgtcttctctgttgctttttctccccaaattaagctctattcagcttgtctgtgtgtagttgcatgaggaactgaactgttgttttcagtggtcacccacggtggagtcctgcccacaagcagcacatattgatcctccacagaaaactgctaggcctcagctcagttcctctttttaagaagaaaactgggaaacaaataatctaagaatgaggagaaaacaaggagaatggccccctttcgagcactccataggttttatggaacctggtctttttatagtttatgtaaaatgaaCGTAATCAGGTCTTTGTGCACATTTACATTAAG-AAAAAACAGCCCatgtaaattagttcaaccattgtggaagacagtatggtgattcctcaaggatctagaaccagaaataccatatgacccagccatcccattacttggtatatacccaaaggaatataagtcattctactataaagacacatgcacacgtatgtttattgcagcactatttacaatagcaaagacatggaaacaacccaaatgtccatcaattatagactagataaagaaaatgtggtgcacatacaccatggaatatgatgtagccataaaacagaatgagatcatgtcctttgcagggacatggattaaactggaagccatcatcttcagcaaactaacacagaaacagaaaaccaaataccacatgttctcccacataaatgggagttgaacattgagaacacatggacac--agagcggagcaacacacatcaggggttgttgaggggtggagagtgaggggagggaacttggaggttgggtcaataggtacagcaaaccaccatggcacacatatacctatgtaacaaacctgcacattctgctgcatgtgtatcccATTTTTGTTTTTGTTTTTTTTTAgaaggaagga i chlSab2.chr16 I 782 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=8753.000000 s hg38.chr17_JH159146v1_alt 259730 15 + 278131 aagaaaagaaggaaa----- s panTro4.chr17 66381253 15 - 82630442 aagaaaagaaggaaa----- i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53221885 15 + 80904711 -----aagaaagaaaggaaa i rheMac3.chr16 C 0 I 1201 s macFas5.chr16 52786584 10 + 80997621 -----aagaaagaaa----- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47791399 10 + 74645514 -----aagaaagaaa----- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10052056 10 - 75148670 -----aggaaggaaa----- i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24903487 47 - 73212453 I e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=1105.000000 s hg38.chr17_JH159146v1_alt 259745 32 + 278131 gaaagcaagcaagcaagaaagcaagcaagcaa s panTro4.chr17 66381268 28 - 82630442 gcaagcaagcaagcaagcaagcaagcaa---- i panTro4.chr17 C 0 C 0 s chlSab2.chr16 10052066 17 - 75148670 --------gaaggaaagaaaagaaa------- i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24903487 47 - 73212453 I e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e papAnu2.chr16 47791409 0 + 74645514 C e macFas5.chr16 52786594 0 + 80997621 C e rheMac3.chr16 53221900 1201 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=-1328.000000 s hg38.chr17_JH159146v1_alt 259777 54 + 278131 gaaagaaagaaagcaagcaagaaagaaagaaagaaaagaaagaaag-------------aaagaaag---------------- s panTro4.chr17 66381296 21 - 82630442 ---------------------------------aaaagaaagaaag-------------aaagaaag---------------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24903534 49 - 73212453 ----gaaagaaagaaggaaagaaggaaggaaa-gaaagaaagaaag-------------aaagaaag---------------- i ponAbe2.chr17 I 47 C 0 s macFas5.chr16 52786594 15 + 80997621 ------------------------------ga-aaaagaaaggaag------------------------------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47791409 15 + 74645514 ------------------------------ga-aaaagaaaggaag------------------------------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10052083 54 - 75148670 ----------------------------gaaa-gaaagaaagaaagNNNNNNNNNNAGAAAggagagagggagggagggagag i chlSab2.chr16 C 0 I 36 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e rheMac3.chr16 53221900 1201 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=13117.000000 s hg38.chr17_JH159146v1_alt 259831 49 + 278131 aaagaa---------------agaaagaaagaaagaaagaaagaaagaaaagaaaaagaaagaa s panTro4.chr17 66381317 34 - 82630442 aaagaa---------------agaaagaaagaaagaaag---------------aaagagagaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24903583 42 - 73212453 aaagaa---------------agaaagaaagaaagaaagaaagaaag-------aaagaaagga i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52786609 34 + 80997621 gaagga---------------agggagggagggagggag---------------ggagggagga i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47791424 49 + 74645514 gaaggaaggagggagggagggagggagggagggagggag---------------ggagggagga i papAnu2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e chlSab2.chr16 10052137 36 - 75148670 I e rheMac3.chr16 53221900 1201 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=196184.000000 s hg38.chr17_JH159146v1_alt 259880 172 + 278131 aAGAa--gagccttaaggtcaacctacaaactacagagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgttatttttctattaagatcaaaaccactgtttggatacaacaggctttttgtttgcaa-cctggtgaatttgtatttgtctca s panTro4.chr17 66381351 172 - 82630442 aagaa--gagccttaaggtcgacctacaaactacagagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgttatttttctattaagatcaaaaccactgtttggatacaacaggctttttgtttgcaaccctggtgaa-ttgtatttatctca i panTro4.chr17 C 0 M 312 s ponAbe2.chr17 24903625 172 - 73212453 gagaaagaagccttaaggttgacctgcaaact--agagttcctaagttctcttttttctctattttcttttctgcctgctttaaatctgctgctatttttctattaagataaaaaccactgtctggatacaacaggctttttgtttgcaa-gctggtgaatttgtatttatctcg i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52786643 171 + 80997621 aggaa--gggccttatagtcgacctgcaaactacagagttcctaagttctcttttttctcta-tttcttttctgccttcattaaatatgcacttatttttctattaagataaaaaccactgtttggatacaacaggttttttgtttgcaa-gctggtgaatttgtatttatctca i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47791473 171 + 74645514 aggaa--aggccTTATAGTCAACCTGCAAACTACAGAGTTCCTaagttctcttttttctcta-tttcttttctgccttcattAAATATgcacttatttttctattaagataAAAACCACTGTTTGGATAcaacaggttttttgtttgcaA-GCTGGTGAATTTGTATTTATCTCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10052173 172 - 75148670 gaggg--gaactttaaagtcgacctgcaaactacagagttcctaagttctcttttttctctattttcttttctgccttctttaaatctgctcttattttcctattaagataaaaaccactgtttggatacaacaggtcctttgtttgcga-gctggtgaagttgtatttgtctca i chlSab2.chr16 I 36 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e rheMac3.chr16 53221900 1201 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=24936.000000 s hg38.chr17_JH159146v1_alt 260052 50 + 278131 tggctaaagttctgaagtaaaagctataggattt----Ctgtgtgtgtgtttgt s ponAbe2.chr17 24903797 50 - 73212453 tggctaaagttctgaagtaaaagctataggattt----CTCtgtgtgtgtgtgt i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52786814 38 + 80997621 tggctaaagttctgaagtagaagctataggatTtgtgt---------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47791644 34 + 74645514 TGGCTAAAGTTCTGAAGTAGAAGCTataggattt-------------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10052345 34 - 75148670 tggctaaagttctgaagtaaaagctataggattt-------------------- i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e rheMac3.chr16 53221900 1201 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C e panTro4.chr17 66381523 312 - 82630442 M a score=1140252.000000 s hg38.chr17_JH159146v1_alt 260102 948 + 278131 gtgtgtgtgtgtgtgtgtgtgtgtATCTATTTAAAAGGCCTTTATAatttttataattttatgtttaattggcaattaaatccattttgacttccctctagcaccaccagac-tttttctctctgtaccttatgatat-aattttgctatttgatttttgcctgagttgtttcctttaacatgcaaacttaaggctatttagctgacaactccctaggggagtaaaacaggttattaagaatttgaaagcctaagataggggaaaaaagctccttaagtatctatacgatgtacttctatcagcatgcctactatgtctatatatttatgtgatgtgtacacaatttctcgctactgaaaatatataaaagagttctaattaattggcttaagataaaaagcacttgaatctaatactttatcaggaaaaaagaaaagactagttgaatgctttctgaagtttatgtaac--aagtaaaatctttaataaataagctagctttaaaattattggtaaagtaatattagacatgtcttaaaaattgccagcatgcatttttgtttgcatttattaatcaagcaatttcatgcttatccctgtcaaataccataaggtgtcaaaatttgccatggagttacaaaactgtaatagaatgatctttgcttgtataatctttaataaataagacattgatattggtttaataaaaatagtcacatcttgaatttagtgagattactgtaacttctaattttgtgg-ttttggtggtctagtccacaggcagtaagatttagtttgagaatgaactgttataatctttgtttcaaaggtaaactataaactatgttcctctcaacgtctgttcagcctgtgcccaggattgaacaagaacagtttggaggttagaagcaagatggagtcaattaggtcagatctttttcactgtctcag s panTro4.chr17 66381841 948 - 82630442 gtgtgtgtgtgtgtgtgtgtgtgtATCTATTTAAAAGGCCTTTATAatttttataattttatgtttaattggcaattaaatccattttgatttccctctagcatcaccagac-tttttctctctgtaccttatgatat-aattttgctatttgatttttgcctgagttgtttcctttaacatgcaaacttaaggctatttagctgacaactccctaggggagtaaaacaggttattaagaatttgaaagccttagataggggaaaaaagctccttaagtatctatacgatgtacttctatcagcatgcctactatgtctatatatttatgtaatgtgtacacaatgtcttgctactgaaaatatataaaagagttctaattaattggcttaagataaaaagcacttgaatctaatactttctcaggaaaaaagaaaagactagttgaatgctttctgaagtttatgtaac--aagtaaaatctttaataaataagctagctttaaaattattggtaaagtaatattagacatgtcttaaaaattgccagcatgcatttttgtttgcatttattaatcaagcaatttcatgcttatccctgtcaaatatcataaggtgtcaaaatttgccatggagttacaaaactgtaatagaatgatctttgcttgtataatctttaataaacaagacattgatattggtttaataaaaatagtcacatcttgaatttagcaagattactgtaacttctaattttgtgg-ttttggtggtctagtccacaggcagtaagatttagtttgagaatgaactgttataatctttgtttcaaaggtaaactataaactatgttcctctcaacgtctgttcagcctgtgcccaggattgaacaagaacagtttggaggttagaagcaagatggagtcaattaggtcagatctttttcactgtctcag i panTro4.chr17 M 312 C 0 s ponAbe2.chr17 24903847 945 - 73212453 gtgtgtgtgtgtgtgtgtgtgCATATCTATTTAAAAGGCCTTTATAatttttataattttatgtttaattggcaattaaatccattttaatttcccgctagcaccaccagac-tttttctctctgtaccttatgatat-aattttgctatttgatttttgcctgagttgtttcctttaacatgcaaatttaaggctatttagctgacaactccctagggcagtaaaacaggttattaagaacttgaaagcctaagataggggaaaaaagctccttaagtgtctatacgatgtacttctatcagcatgcctactatgtctatatatttatgtgttgtgtacacagtatctcactactgaaaatatataaaagagttctaattaattggcttaagataaaaagcacttgaatcaaatactttatcaggaa-----aaaagactagttgaatgctttctcaagtttatgtaacttaagtaaaatctttaataaataagctagctttaaaattattggtaaagtaatattagacatgtcttaagaattgccagcatgcatttttgtttgcatttattaatcaagcaatttcatgcttatccctgtcaaatactataaggtgtcaaaatttgccatggggttacaaaactgtaatagaatgatctttgcttgtataatctttaataaacaagacattgatactggtttaataaaaatagccacatcttgaatttagtaagattactgtaacttctaatcttgtgg-ttttggtggtctagtccacagacagtaagatttattttgggaatgaactgttataatctttgtttcaaaggtaaactataaactatgttcctctcaacgtctgttcagcctgtgcccacaactgaacaagaacagtttggaggttagaagcaaggtagagtcaattaggtcagatctttttcactgtctaag i ponAbe2.chr17 C 0 C 0 s macFas5.chr16 52786852 947 + 80997621 gtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTAAAGGGTCTTTATAatttttataattttatgtttaattggcaattaaatccattttaatttccctctagcaccaccagacttttttctctctgtaccttatgatataaatttagctatttcatttttccctgagttgtttcctttaatatgcaaacttaaggctacttagctgacaactccctaggggagtaaaacaggttattgagaatttgaaagtctaagataggggaagaaagcaccttaagaatctataagaggtacttctatcaacatgcctactacgtctatatatttatatgttgtgtacacaatgtctcactactgaaaatatataaaagagctctaattaattggctta----aaaaagcacttgaatcaagtactttatcaggaacaaagaaaagattagtagaatgctttct-aagtttatgtaacgtaagtaaaatctttaataaataagttagctttaaaattattggtacagtaataatagaggtgtcttaagaatttccagcatgcatttttgtttgcatttattaatcaagccatttcatgcttatccctgtcaaatactataaggtgtcaaaatttggcatggggttacaaaactataatagaatgatctttgattgtgtaatctttaataaataagacattgatatctgtttta-aaaaatagccacatcttgaatttagtcagattaccgtaacttctaatcttgtggcttttggtggtctagtccacaggcagtaagatttgttttgggaatgaactgttatactctttgtttcaaaggtaaactatgaactatgttcctctcaaagtttgttcatcctgtgtcccggattgaacaagaacagcttggaggatagaagcaagatggagtcagttaggtcagatctttttcactgtctcag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47791678 938 + 74645514 ---tgtgtgtgtgtgtgtgtgtgtgtgtatttaaagggtctttataatttttataattttatgtttagttggcaattaaatccattttaatttccCTCTAGCACCACCAgacttttttctctctgtaccttATGATATAAATTTAGCTATTTCATTTTTCcctgagttgtttcctttaatatgcaaaCTTAAGGCTACTTAGCTGACAACTCCCTAGGGGAGT-AAACAGGTTA-TGAGAA-TTGAAAGTCT-AGATA-GGGAAGAAAGCA-CTTAAGAATCTATAAGAGGTACTTCTATCAGCATGCCTACTAcgtctatatatttatatgttgtgTACACAATGTCtcactactgaaaatatataaaagagctctaattaattggctta----aaaaaGCACTTGAATCAAGTACTTTATCAGGAACAAAGAAAAGATTAGTAGAATGCTTTCT-AAGTTTATGTAAcataagtaaaatctttaataaataagttagctttaaaattattggtacaGTAATAATAGAGGTGTCTTAAGAATTTCCAGCatgcatttttgtttgcatttattaatcaagcCATTTCATGCTTATCCCTGTCAAATactataaggtgtcaaaatttggcatggGGTTACAAAACTATAATAGAATGATCTTTGATTGtgtaatctttaataaataagacattgatatctgtttaa-aaaaatagccacatCTTGAATTTAGTCAGATTACcgtaacttctaatcttgtggcttttGGTGGTCTAGTCCACAGGCAGTAAGATTTGTTTTGGGAATGAACTGTTATACTCTTTGTTTCAAAGGTAAACTATGAACTATGTTCCTCTCAAAGTTTGTTCATCCTGTGCCCCGGATTGAACAAGAACAGCTTGGAGgatagaagcaagatggagtcagttaggtcagatctttttcactgtctcag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10052379 948 - 75148670 gtgtgtgtgtgtatgtgtgtgtgtgtgtatttaaaaggcctttataatttttataattttatgtttaattagcaattaaatccattttaatttccctctagcaccaccagacttttttctctctgtaccttatgtaataaattttgttatttcatttttccctgagttgtttcctttaatatgcaaacttagggctatttagctgacagctccataggggagtaaaacaggttattgagaatttgaaagtctaagata-ggggaaaaagcaccttaagaatctataagaggtacttctatcagcatgcctactacgtctatatatttatgtgttgtatacacaatgtctcactaacaaaaatatatgaaagagctctaattaatttactta----aaaaagcacttggatcaaatactttatctggaacaaagaaaagactagttcaatgttttctcaagtttatgtaacttaagtaaaatctttaataagtaagctagctttaaaattattgataaagtaatattagacatgtcttaagaatttccagcatgcatttttgttcgcacttattaatcaagcaatttcaagcttatccctgtcaaatactataaggtgtcaaaatttggcatgggatcacaaaactgtaatataatgatctttggttatgtaatctttaataaattagacattgatattggtttaataaaaatagtcacatcttgaatttagtcagattGctataacttctaatcttgtggcttttggtggtctagtccacgggcagtaagatttgttttgggaatgaactgttataatctttgtttcaaaggtaaactagaaactatgttcctctcaaagtatatttggcctgtgcccaggattgaacaagaacagctcggaggatagaagcaagatcgaatcagttaggtcagatctttttcactgtctcag i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e rheMac3.chr16 53221900 1201 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=589740.000000 s hg38.chr17_JH159146v1_alt 261050 1192 + 278131 ttataattttgcaatggcagttccataactttaaatgatgactattgcagttttcataaataatctaggtaaacaattcctttttaaaaaggtgaacaattgtcatctaattcaatgcttatttaaagattatgtataagacaagttaaaaggaaccaggaaatcagagagatgtaaagaaaggtataaaaataaagaggataaagagggttctttttggtaaggaagcttaaagagaaataatttcatatgagaaaagatcttgtatggtaaatttagacctaaaataaaa----tgattgtttaagaaagatggatgttcaaaacaaaccagaaagtccaagcatatcatgaacagtctgtaaaagtcataataagaggatt--------------aaaaaaaaa--accaacaaacttttatatggtcaagttgtctgtaattaaaaggaaattataatagtcttcctgaagattgggcttcatgt--aaaaaaaaaaaagcactgataaacaaaatagtt----agagcgatgaaattttcttaagggattgatttactcttattaaattataagagattttaatttttttaacccaaagttcaactgtttactcgctgttttctctccccttcaactcgtttgcagctcatataagttattttccttaaattctatttgttatggtctgatgctaacaatgttttctaaaagtctaaagaaaatgttttcttccaaagtaatattctgtgcagtgtagaaggtcttttcttttgcctttgggtaattgacctaacagattttatggcttattgaaacaa-tgttatgctgttattattaatttttgatttgctcaggaaaaagtatctgagataattttttaaaattaaggttattacatccatgtatatttctgtaggtgctttgaaagtacctgtgacattaagttacaggcctttgactcctgggtctaacaaggacaccaaggtctgctaaatcttaagcactgacagcaattaaaacctcatcttcaggcctggtagaagatgcc------aatcaaaataaactgcattcctgagacataaggccagaagtaaaagctattcaactcctcaaggctcaggaactaccacagaagaggtaggcatgtgagattgtaagggctgattttgagagacaaaataagttcagtttctctgcaagttaataattgatgtc s panTro4.chr17 66382789 1191 - 82630442 ttacaattttgcaatggcagttccataactttaaatgatgactattgcagttttcataaataatctaggtaaacaattcctttttaaaaaggtgaacaattgtcatctaattcaatgcttatttaaagattatgtataagacaagttaaaaggaaccaggaaatcagagagatgtaaagaaaggtataaaaataaagaggataaagagggttctttttggtaaggaagcttaaagagaaataatttcatatgagaaaggatcttgtatggtaaatttagacctaaaataaaa----tgattgtttaagaaagatggatgttcaaaacaaaccagaaagtccaagcatatcatgaacaatctgtaaaagtcataataagaggatt--------------aaaaaaaaa---ccaacaaacttttatatggtcaagttgtctataattaaagggaaattataatagtcttcctgaagactgggcttcatgt--aaaaaaaaaaaagcactgataaacaaaatagtt----agagcgatgaaattttcttaagggattgatttactcttaataaattataagagattttaatttttttaacccaaagttcaactatttactcgctgttttctctccccttcaactcgtttgcagctcatataagttattttccttaaattctatttgttatggtctgatgctaacaatgttttctaaaagtctaaagaaaatgttttcttccaaagtaacattctgtgcagtgtagaatgtcttttcttttgcctttgggtaattgacctaacagattttatggcttattgaaacaa-tgctatgctgttattattaatttttgatttgctcaggaaaaagtatctgagataattttttaaaattaaggttattacatccatgtatatttctgtaggtgctttgaaagtacctgtgacattgagttacaggcctttgactcctgggtctaaaaaggacaccaaggtctgctaaatcttaagcactgacagcaattaaaacctcatcttcaggcctggtagaagatgcc------aatcaaaataaactgcattcctgagacataaggccagaagtaaaagctattcaactcctcaaggctcaggaactaccacagaagaggtaggcatgtgagattgtaagggctgattttgagagacaaaataagttcagtttctctacaagttaataattgatgtc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24904792 1193 - 73212453 ttataattttgcaatggcagttccataactttaaatgatgactattgcagttttcataaataatctaggtaaacaattcctttttaaaaaggtgaacaattgttgtctaattcaatgcttatttaaaggttatgtataagacaagttaaaaggaaccaggaaatcagagagatgtaaagaaaggtataaaaataaagaggataaagagggttctttttggtaaggaagcttaaagagaaataatttcatatgagaaagaatcttgtatggtaaatttagacctaaaataaaa----tgattgtttaagaaagatggatgttcaaagcaaaccagaaagtccaagcatatcatgaacagtctgtataagtcataataagaggatt--------------aaaaaaaaaacaccaacaaacttttatatgatcaagttgtctataattaaagggaaattataatagttttcctgaagattgggcttcatgt---aaaaaaaaaaagcactgataaacgaaatagtt----agagtgatgaaattttcttaagggattgatttactcttaataaattataagagattttaatttttttaacccaaagttcaactattaactcgctgttttctctccccttcaactcgttttcagctcatataagttattttccttaagttctgtttgttgtggcctgatgctaacaatgttttctaaaagtctaaagaaaatgttttcttccaaagtaatattgtgtgtagtgtagaaggtcttttcttttgcctttgggttattgacctaagagattttgtggtttattgaaacaa-tcctatgctgttattattaatttttgatttgcttaggaaaaagaatctgagataatttttttaaattaaggttattacatccatgtatatttctgtaggtgctttgaaagtacctgtgacattgagttacaggcctttgattcctgggtctacaaaggacaccaagatctgctaaatcttaaacactgacagcaattaaaacctcatcttcaggcctggtagaagatgcc------aatcgaaataaactgcattcctgagacataaggccagaagtcaaagctattcaactcctcaaggctcaggaactaccacagaagaggtaggcatgtgagattgtaagggctgattttgagacacaaaataagttcagtttctctgcaagttaataattgatgtc i ponAbe2.chr17 C 0 C 0 s chlSab2.chr16 10053327 1220 - 75148670 ttataattttcctatgacagctccataactttaaattatgactattgtagttttcataaataatctaggtaaacaattcc-ttttaaaaaggtgaacaattgttgtctaattcaatgcctatttaaaggttatgtataaaacaaggtaaaaggaactaggaaataagagagatgtaaagaaagttatgaaaaaaaagggggtaaagaggattcattttggtaagaaagctt-aagagaaataatttcatgtgagaaagaatcttgtatggtaaatttagacctagaataaaatgactgattgtttaagaaagatggatgttcaaaacaaaccagaaagtccaagcatatcatgaacggtctgtaaaagtcacattaagaggatttatttcaaaaaaaaaaaaaaaaaacaccaaaaaacttatatatgatcaaattgtctaaaattaaagggaaatgataatggtcttcctgaagattgggcttgatgttaaaaaaaaaaaaaacacttacacactacataattagtaagagtgatgagattttcttaagggattaatttactc--aataaattataggagattttaattgttttaacctaaaattcaactatttacttgctcttttctctccccttcaactcgttttcagctcataaaagttcttttccttaagttctgtttgttgtggcttgatgctaacaatgttttctaaaagtctaaaggaaatgttttcttccaatgtaatattctgtgcagtgcagaaggtctttttatttgctttttggtaattgacctaacagattttatggtttattgaaacaattcctatgccattatta-taatttttggtttgcttatgaaaaagaaactgagataattttttaaaattaaggttattacattcatgtatatttctgtatgcactttgaaagtacctgtgacattgagttacaggcctttgactcctgggtctaaaaaggacaccaagatctgctatatcttaaacactgacagcaattaaaacctcatcttcagacctggtagaagatgccaatgaaaataaaaataaactgcattcctgagacataaggccagaaatcaaagctattcaactcctcaaggctcaggagctaccacagaagaggtaggcacgtgagattgtaagggctgattttgagagataaaataagttcagtttctctacaaattaatAACTGAGGTC i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e papAnu2.chr16 47792616 0 + 74645514 C e macFas5.chr16 52787799 0 + 80997621 C e rheMac3.chr16 53221900 1201 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=622478.000000 s hg38.chr17_JH159146v1_alt 262242 2355 + 278131 aaaggcacactgatgcaataccagcatacgggcccctgcatcagattaaaaaggttttcttgaagtgttaaccgaccccttaataaaggttataaaggttaaaaaaggcttatggaagctgtatcttatggtcaagattaaaattttaaagattgataataaaatttcaaaaaacaaatttaattggctttatgctgttttatttgggcttaatgtttgaaaaattgacttattttatgatgacct-----atcaagtattttaaacttttgatatttggcaaagtttccagaatcaaattacaagttgtgtatttttctgacctaattaatcctctaagatattagtttccctaaagtccaaaaatgaaataaatgacttatttggtataaaaattatacaggaagcattgtcaaatataaaatggtgtttggttttctttgggctgtatttgtataaaaatgttattggtatgtgcaccaaaattatgggaaactcctataattctgatatgacatggtgtacaatatcactaataattataattgttatataaaattatcgtgtgccacagtggtaacaaattttcttgtcaattgtgtctttgattatggctgacctaaaactttttgtcacccatggacaattgtt---ttgttttagtcctttttagaagatggttttataatcagctataaaactctaacacgtgttcttgaaggcaagtttctaataactttggagactgtgacatcagaatggaggaaaagctttcagaactcatggagacctgaaatgttcatgaatagcaagcagaacaggaattaactgcatgaactgaactaatagaagagcaacgtaatctttttgactttttgcttaaaatgttgctgctccttgttttcctttttttagtcaaggaaacttttatttgagctgttgtcagcttttaacaagttagtatactcctgtgaaaaatatttggagcatatttgtttctctctacctgattttccccagaattggaaactatctgtgagtattcttaacttatggcaatacagttatttgcataagtgcaataataatctgttttcatgtgtaacaagacacaattggagaaattggtcattttaccaaggctttgactggaatggtgtgctctcctttaaggaatcaaatttgacttatggagccaataaaagccccttgggagaactggcctcataccttatctacacagtccctgtacagggttcctgacctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagagcagaggaattcatgcaactcataggtatttgatggtacaaatccatggctaggctaagctttccaaaagtcttatccgaaattccttctatggaacaaagttctgatagagacagggggctgagaaattctaggcagaaaagggtaggtctctgacaaaaccccaccttcaagctgaaaagccttaaaccacggcccaaagtgagaacttatatccctgttttcctgcttgaaagttgcctttttctaaaccactcatggctccatcctgtcc-atcctatgcctgtgaagatgccagactcagctggcagaggcaagaagcagctggacattgggaactacagctggacgtcagagagaagcagcttgatt-cagagggacagcttgatggtgtaatcttggagaagaatccagctggatacagcctaactttgaggaagattacctacccaccccatcctttttcagctcccctttctgctaagagccactttcatcagcaacaaaatcccccacatttaccatcctttgattggttcatgtgacctcacttttcctggacacaagacaagagcttgggagccaggagagcagatacaaaagactgtcacactggccctctgcccttgctggtggagggcagctgcctcacacaaaaaggcagaggcctcactgagctgttgacacttaagccatccatggaaggcagagttaaaagaacactgtaacatgccctctggggctatgggggtcgcaggcacccccacctagatgctgctgtggggcccacacagagtttgctcctgccggtggccaaaagcactcactttggctcctgcactgattcacctgcatgcttcctcccacaagcaggggactgcagcaggtcccagtgagtgaagtttgatcctaccgtgctgcagtgccgattccagcaca-gtgcactccagttcctgcctcatttgcttgcatgctcgctcctgcaaggagttgagagtggcaggctgaataaacgaggcaccc--gtcacaa s panTro4.chr17 66383980 2363 - 82630442 aaaggcacactgatgcaataccagcatacgggcccctgtgtcagattaaaaaggttttcttgaagtgttaaccgaccccttaataaaggttataaaggttaaaaaaggcttgtggaagctgtatcttatggtcaagattaaaattttaaagattgtttataaaatttcaaaaaacaaatttaattggctttatgctgttttatttgggcttaatgtttgaaaaattgacttattttatgatgacctgtcatatcaagtattttaaacttttgatatttggcaaagtttccagaatcaaattacaagttgtgtatttttctgacctaattaatcctttaagatattagtttccctaaagtccaaaaatgaaataaatgacttatttggtataaaaattatacaggaagcattgtcaaatataaaatggtgcttggttttctttgggctgtatttgtataaaaatgttattcatatgtgcaccaaaattatgggaaactcctataattctgatatgatatggtgtacaatatcactaataattataactgttatataaaattatcgtgtgccacagtggtaacaaattttcttgtcaattgtgtcttcgactatggctgacctaaaactttctgtcacccatggacaattgtt---ttgttttagtcctttttagaagatggttttataatcagctataaaactctaacacgcgttcttgaaggcaagtttctaataactttggagattgtgacatcagaacggaggaaaagctttcagaactcatggagacctgaaatgttcatgaatagcaagcagaacaggaattaactgcatgaactgaactaatagaagagcaacgtaatcttttcgactttttgcttaaaatgttgctgctccttgttctctttttttcagtcaaggaaacttttatttgagctgttgtcagcttttaacaagttagtatactcctgtgaaaaatatttggagcatatttgtttctctctacctgattttccccagaattggaaactatctgtgagtattcttaacttatggcaatacagttatttgcataagtgcaataagaatctgttttcatgtgtaacaagacacaattggagaaattggtcattttaccaaggctttgactggaatggtgtgctctcctttaaggaatcaaacttgacttatggagccaataaaagccccttgggagaactggcctcataccttatctacacggtccctgtacagggttcctgacctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagaggagaggaattcatgcaactcataggtatttaatggtacaaatccatggctaggctaagctttccaaaagtcttatctgaaattccttctatggaacaaagttctgatagggacagggggctgagaaattctaggcagaaaagggtaggtctctgacaaaaccccaccttcaagctgaaaagccttaaaccacggcccgaagtgagaacttatatccctgttttcctggttgaaagttgcctttttctaaaccactcatggccccatcctgtcccatcctgtgcctgtgaagatctcagactcagctggcagaggcaagaagcagctggatgttggggactacagctggacatcagagagaagcagcttgactgcagagggacagcttgatggtgtaaccttggagaagaatccggctggatacagcctaactttgaggaagattacctacccaccccatcctttttcagctcccctttctgctaagagccactttcatcagcaacaaaatcccccacatttaccatcctttgattggttcatgtgacctcacttttcctggacacaagacaagagcttgggagccaggagagcagatacaaaagactgtcacactggccctctgcccttgctggtggagggtagctgcctcacacaaaaaggcagaggcctcactgagctgttgacacttaagccatccatggaaggcagagttaaaagaacactgtaacatgccctctggggctatgggggtcgcaggcacccccacctagatgctgctgtggggcccacacagagtttgctcctgccggtggccaaaagcactcactttggctcctgcactgattcacctgcatgcttcctcccacaagcaggggactgcagcaggtcccagtgagtgaagtttgatcccactgtgctgcagtgccgattccagcacacgtgcactccagttcctgcctcatttgcttgcatgcttgctcctgcaaggagttgagagtggcaggctgaataaacgaggcaccc--gtcacaa i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24905985 2366 - 73212453 aaaggcacactgatgcaataccagcatacgggcccctgtgtcagataaacaaggttttctggaagtgttaaccgaccccttaataaaggttataaaggttaaaaaaggcttatggaagctatatcttatggtcaatattaaaattttatagattgtttataaaattttgaaaaacaaatttaattggctttatgctgttttatttgggcttaatgtttgaaaaattgacttattttatgatgacctgtcatatcaagtattttaaacttttgatatttggcaaactttccagaatcaaattacaagttatgtatttttctgacctaatttatcctttaagatactagtttccctcaagtccaaaaatgaaataattgacttatttggtataaaaattatataggaagcattgtcaaatataaaatggtgtttgcttttctttcggctgtatttgtacaaaaatgttattggtatgtgcaccaaaattatgggaaactcctgtagttctgatatgacctggtgtacattatcagtaatgattataattgttatattaaattattgtgtgccacggtggtaacaaattttcttctcaattgtgtcttcgactatggctgccctaaaactttttgtcatccatggacaattgttgtcttgttttagtcctctttagaagatggttttataatcagatataaaagttta--acgtgttcttgaaggcaagtttctaataactttggagattgtgacatcagaatggaggaaaagctttcagaactcatggagacctgaaatgttcatgaatatcaagcagaacaggaattaactgcatgaactgacctaatagaagagcaaagtaatctttttgactttttgcttaaaatgttgctgatccttgttttcttttcttcagtcaaggaaacttttatttgagctgttgtcagcttttaacaagttagtatactcctgtgaaaaatatttggaacatatttgtttctctctacctgattttccccataactggaaaccatctgtgagtattcttaacttatggcaatacagttatttgcataagtgcaataagaatctgttttcatttgtaacaggacacaattggagaaattggtcattttaccaaggctttgactggaatggtgtgctctcttttaaggaatcaaacttgacttatggagccaataaaagccccttgggagaactgccctcataccttacctacacagtccctgtacagggttcctgacctgtggtaagtaaagcatgtcactttctaacagttccaggagccccaagtttatcttggaacctcaagaggagaggaattcatccaactcataggtatttgatggtacaaatccatggctaggctcagctttccaaaagtcttatccgaaattccttctatggaacaaagttctgatagggacagggggctgagaaattctaggcagaaaagggtaggtccctgacaaaaccccaccttcaagctgaaaagccttaaaccacggcccaaagtgagaacttacatccctgttttcctgcttgaaagttgcctttttctaaaccactcatggccccatcctgtcccatcctgtgcctatgaagatgccagactgagctggcagaggcaagaagcagctggacgttggggactacagctggacgtcagagagaagcagcttgattgcagagggacagcttgatggcgtaaccttggagaagaatccggctggatacagcctaactttggggaagattacccacccaccccatcctttttcagctccccttcctgctaagagccactttcattagcaacaaaatcccccatatttaccatcctttgattggttcgtgtgacctcacttttcctggacacaagacaagagcttgtgagccaagagagcagatacaaaaggctgtcacactggccctctgcccttgctggtggagggcagctgcctcacgcaaaaaggcagagggctcactgagctgttaacacttaagccatccatggaaggcagagttaaaagagcactgtaacatgtactctggggctatgggggtggcaggcaccctcacctagatgctgctgtggggcccacatagagtttgctcctgccggtggccaaaagcactcactctggctcctgcacctattcacctgcatgcttcctcccacaagcaggggactgcagcaggtcccagcgagtgaagtttgacctcaccgtgatgcagtgcctattccagcacacatgcactccagttcctgcctcatttgcttgcatgctccctcctgcaaggagttgagagtggcaggctgaataaatgaggcacccctgtcacaa i ponAbe2.chr17 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e chlSab2.chr16 10054547 0 - 75148670 C e papAnu2.chr16 47792616 0 + 74645514 C e macFas5.chr16 52787799 0 + 80997621 C e rheMac3.chr16 53221900 1201 + 80904711 I e nomLeu3.chr19 48111116 0 - 81552678 C a score=311290.000000 s hg38.chr17_JH159146v1_alt 264597 595 + 278131 gtcccacaaaggggtcagggaaacatcctgcttcagttccatcaaaggcaatttaaaagcttatgcaaaaaaaaagtattactatggctgcgctgtatacaaataatcaggtcaagtataataaagaaaatcagccctgccatgatttgtctttagtaaaaatgggaaatgggagagagaagaattatgtttcaaaaaatgataatacacctgttgttagattctagtcttgcctaatgttttcacatttttattattttctacagtttcgactgaattctaatttttcttggctacaggtcttcaaaagattgttttcagtttttttttcttcttctttcccccatttttcctaatttggagtcactgaaaactcatctgtgcttttgtaaaagccctgcgaactggagctagagaatttaaacttcagaagaaaataccagcaacctgtttacatacataagccactttcatacctgcctactgatgtatggacttcagagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctccccctattttctcttcataggacatga s panTro4.chr17 66386343 591 - 82630442 gtcccacaaaggggtcagggaaacatcctgcttcagttccatcaaaggcaatttaaaagcttatgcaaaaaaaa-gtattactatggctgcgctgtatacaaataatcaggtcaagtataataaagaaaatcagccctgccatgatttgtatttagtaaaaatgggaaatgggagagagaagaattatgtttcaaaaaatgataatacacctgttgttagattctagtcttgcctaatgtttttccatttctattattttctacagtttcgactgaattctaatttttcttggctacaggtcttcaaaagattgttttcagttttttt--cttcttctttcccccatttttcctaatttggagtcactgaaaactcatctgtgcttttgtaaa-gccctgcgaactggagctagagaatttaaacttcagaagaaaataccagcaacctgtttacatacataagccactttcatacctgcctactgatgtatggacttcagagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctccccctattttctcttcataggacatga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24908351 593 - 73212453 gtcccacaaaggggtcagggaaacattctgcttcacttccatcaaagccaatttaaaagcttatgcaaaaaaaa-ttattactatggctgtgctgtatacaaatagtcaggtcaagtataataaagaaaatcagccctgccatgatttgtctttagtaaaaatgggaaacaggagagagaagaattatgtttcaaaaaatgatagtacacctgttgttagattctagtcttgcctaatgtttttccatttttattattttctacagtttggactgaattctaatttttcttgggtacaagccttcaaaagattgttttcagtttttttttcttcttctttcccccatttttcctaatttggagtcactgaaaactcatctgtgcttttgtaaa-gccctgcgaactgaagctagagaatttaaacttcagaagaaaatatcagcaacctgttgacatacataagccactttcatacctgcctactgatgtatggacttcagagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttcctccccctattttctcttcctaggacatga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48111116 588 - 81552678 gtcccacaagggggtcaggaaaacatcctgcttcagttccatcaaagccaatttaaaagcttatgcaaaaaaaa-ttattactatggctacgctgtatacaaataatcaggtcaagtataataaagaaaatcagccctgccatgatttgtctttagtaaaaatgggaaacgggagagagaat-----tgtttcaaaaaatgatagtacacctgttgttagattctagtcttgcctaatgtttttccatttttattattttctacagtttggactgaattctaatttttcttggctacaagccttcaaaagattgttttcagtttttttttcttcttctttcccccatttttcctaatttggagtcactgaaaactcatctgtgcttttgtaaa-gccctgcgaactgaagctagagaatttaaacttcagaagaaaataccaggaacctatttacatacataagccactttcatagctgcctactgatgtatgcacttcagagtaatgtggcccatattgattttccaggattgttcttttgtttatttttgtttttctcccttccttcccctattttctcttcataggacatga i nomLeu3.chr19 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e chlSab2.chr16 10054547 0 - 75148670 C e papAnu2.chr16 47792616 0 + 74645514 C e macFas5.chr16 52787799 0 + 80997621 C e rheMac3.chr16 53221900 1201 + 80904711 I a score=113829.000000 s hg38.chr17_JH159146v1_alt 265192 145 + 278131 aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctttctaggaataaacaatcctagccatgagatatcagatgaaacttgagaccaaagactgactttcttcaaaaaggctttctcaaaaagattttt--- s panTro4.chr17 66386934 144 - 82630442 aacttcgcaacctgctaaaaatgaactttcctaataactcaggaattatctgtctaggaataaacattcctagccatgagatatcagatgaaacttgagaccaaagatggactttcttcaaaaagtcgttcccaaaagg-ttttt--- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24908944 148 - 73212453 aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctgtctaggaataaacaatcctagccatgagatatcagatgaaacttgataccaaagactgactttcttctaaaatgctttctcaaaaagatttttagg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48111704 148 - 81552678 aacttcacagctggctaaaaatgaactttcctaataactcaggaattatctctctaggaataaacaatcccaaccgtgagatagcagatgaaacttgagaccaaagactgactttcttctgaaatgctttctcaaaaagatttttaag i nomLeu3.chr19 C 0 C 0 s chlSab2.chr16 10054547 148 - 75148670 Aacttcacaacctgctaaaaatgaactttcctaataactcaggaattatctatctagaaataaacaatcttagccatgagatatcagatgaaacttgagaccagagactgattttcttctaaaatgctttctccaaaagatttttaag i chlSab2.chr16 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e calJac3.chr5 112936501 5139 + 159171411 I e papAnu2.chr16 47792616 0 + 74645514 C e macFas5.chr16 52787799 0 + 80997621 C e rheMac3.chr16 53221900 1201 + 80904711 I a score=409061.000000 s hg38.chr17_JH159146v1_alt 265337 352 + 278131 aagaaaaggggggaaATTtgaaaggaaaataaaccttggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaactgcttagggcaaacctgcctcccattctattcacagtcacccctctgctcactgagttaaatgcatatctgattgcctcctttggaaaggctaatcagaaactctaaagaaagcaaccatttgtctcttatctacctatgacctggaag-cccctccccgcttagacttgtcccgc---------------------cttttccggacggaaccactgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccact s panTro4.chr17 66387078 351 - 82630442 aagaaaaggggg-aaaTTtgaaaggaaaataaaccttggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaactgcttagggcaaacctgcctcccattctattcacagtcacccctctgctcactgaattaaatgcatatctgattgcctcctttggaaaggctaatcagaaactctaaagaaagcaaccatttgtctcttatctacctatgacctggaag-cccctccccgcttagagttgtcccgc---------------------cttttccggacggaaccactgttcatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtgctctgaccact i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24909092 352 - 73212453 aagaaaagaggggaaAtgtgaaaggaaaataaacctgggggccctgaaatcactaaggtaaacgggaaagtcaagctgggaactgcttagggcaaacctgcttcccattctattcctagtcacccgtctactcactgagttaaatgcatatctgattgcctcctttggaaaggctaatcagaaactctaaagaaagcaaccatttgtctcttatctacctatgacctggaag-cccctccccgcttagagttgtcccgc---------------------cttttccggactgaaccactgttcatcttacatatgttgattgatgtctcatgtctctctaaaatgtataaaaccaagctgttctctgaccact i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48111852 352 - 81552678 aagaaaagggGGGAAAtgtaaaaggaaaataaaccctggggccctgaaatcactaaggtaaaggggaaagtcaagctgggaactgcttagggcaaacctgcctcccattctgttcaaagtcactcctctgctcgctaagttaaatgcatatctgattgcctcctttggaaaggccaatcagaaactctaaagaaagcagccatttgtctcttatctacctatgagctggaag-cccctccccgcttagagttgtctcgc---------------------cttttctggaccgaatcaatgttcatcttacatatgttgattgatgtctcatgtcttcctaaaacgtataaaaccaagctgtgctctgaccact i nomLeu3.chr19 C 0 C 0 s chlSab2.chr16 10054695 352 - 75148670 aggaagagTGGGGAAAtgtgaaaggaaaataaatcttggggccctgaaatcaccaacctaaagtggaaagtcaagttgggaactgcttagggcaaacctggctcccattctattcaaagtcacccctctgctccctgagataaatgcatatctgattgcctcctttggaaagactaataagaacctctaaagaatgcaaccatttgtctcttatctacctatgacctggaag-tccctccccacttagagtggtcctgc---------------------cttttcgggagcaaaccaatgttcatcttacatatgttgattgatgtctcatgtctccctaaaaggtataaaacccagccgtgctctgacccgt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112941640 372 + 159171411 AAGAAAAGGGGAGAAAtgtgaaaggtaaataaaccttgaggccctgaaatcactaagctaaagggaaacgtcaagctgaaaacttctttgggccaagctatctcccattctattc--agtcatccctctgctcactgagatatatgcatacccgagtgccatctttgggaagactaatcagaaactctaaagaatgcaaccatttgtctcttatctacctttgacctggaagccccctcctcacttagagttgtcccacctttgcttagagttgtcctctcttttcgagactgaaccaatattcaccttatatatgttgattgatgtctcatatctccctaaaatgtataaaatcaaactgtgctctgacaact i calJac3.chr5 I 5139 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e papAnu2.chr16 47792616 0 + 74645514 C e macFas5.chr16 52787799 0 + 80997621 C e rheMac3.chr16 53221900 1201 + 80904711 I a score=889001.000000 s hg38.chr17_JH159146v1_alt 265689 306 + 278131 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaataaactgagacctgtctccgattttgggggttcacaAGGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGATCCTTTCACAGCAAGCTCTTTTCACTTGAACCTTTGTGCATCAGTGCCTAACTCTTTCACAAGATAAGGGGTCCTACAGAATCGAAGCAGACCCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAGCC s panTro4.chr17 66387429 306 - 82630442 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctccgattttgggggttcacaAGGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAAGCTCTTTTCAGTTGAACCTCTGTGCGTCAGTGCCTAACTCTTTCACAAGATAAGGGGTCCTACAGAATAGAAGCAGACCCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTCGGAAAGAGAGCAAAAGCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24909444 306 - 73212453 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttgggggttcacaAGGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGAACCTTTCACAGCAGGTTCTTTTCACTTGAAGCTTTGTGCATCAGCGCCTAACTCTTTTGCAAGATAAGAGGTCCTACGGAATATCAGCAGACCCACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAGCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112204 305 - 81552678 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttgggggttcacaAGGCCACACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGAGCCTTTCACAGCAGGCTTGTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTCGCAAGATAAGGGGTCCTACAGAATACCAGCAGA-CAACCAGAGGGTTACAAGTTCCTGATACCTAGTACAACCTGGGAAAGAGAGCAAAAGCC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53223101 304 + 80904711 ttgggcacatgtcttcagaacctcctgaggctgtgtcacagatgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggggttcacaAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGATCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAGCC i rheMac3.chr16 I 1201 C 0 s macFas5.chr16 52787799 304 + 80997621 ttgggcacatgtcttcagaacctcctgaggctgtgtcacaggtgtacatccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggggttcacaAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAGCC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47792616 303 + 74645514 ttggGCACATGTCTTCAGAACCTCCTGAGGC-GTGTCACAGGTGTACATccccaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggGGTTCACAAGGCCATACCGACTTGTCCCTTGTTTGAAGCCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAATACCAGCAGA-CCACCAGAGGGTTACAAGTCCCTGATACCTAGTACAGCCT-GGAAAGAGAGCAAAAGCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055047 304 - 75148670 ttgggcacatgtcttcagaacctcctgaggctatgtcacaggtgtacatccccaaccttggcaaaatacactttctaaattaactgagacctgtctcagattttcgggattcacaAGGCCATACTGACTTGTCCCTTTTTTGAAGTCCAGCAGGCACCTTTCACAGCAGGCTCTTTTCACTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGAGCCCTACAGAACACCAGCAGA-CCACCAGAAGGTTACAAGTCCCTGATACCTGGTACAGCCT-GGAAAGAGAGCAAAAGCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942012 291 + 159171411 ttgggcacatgtcatcaggacctcctgatg-------acaggtatgcatccccactctgggcaaaataagctttctaaattgacttagacctgtctcaaatt-------ttcaCAAAGCCATACTGACTTGTCCCCTGTGTGAAGCCCAGCAGGCACTTTTTAGAGCAGGCTCTTTTTGCTTGCACCTTTGTGCATCAGCACCTAACTCTTTTGCAAGATAAGGGATCCTGCAGAATACCAGCAGA-CCACCAGAGAGTTACAAGTTCCTGATACCTAGGACCACCTGGGAAAGAGAACAAGAGCC i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I a score=14342.000000 s hg38.chr17_JH159146v1_alt 265995 9 + 278131 CTTTATTCC s panTro4.chr17 66387735 9 - 82630442 CTTTATTCC i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24909750 9 - 73212453 CTTTAATCC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112509 9 - 81552678 CTTTATTCC i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47792919 9 + 74645514 CTTTTTTCC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055351 9 - 75148670 CTTTTTTCC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942303 9 + 159171411 CTTTATTCC i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e macFas5.chr16 52788103 0 + 80997621 C e rheMac3.chr16 53223405 0 + 80904711 C a score=759555.000000 s hg38.chr17_JH159146v1_alt 266004 256 + 278131 TGATGCAGCTTCCCCAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTCCTAACTACAAATTCCTTCCTGGGGTG-----GGGTGTTTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGATCAAGGTTCAGCTTATAGtaaccatttcctcattttaatagtaaaaacaaccacaacaagaaaaacaccccaaggcggagatttcatatgctaatgatacatgcgatgggtgttaga-ccac s panTro4.chr17 66387744 256 - 82630442 TGATGTAGCTTCCCCAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTCCTAACTACAAATTCCTTCCTGGGGTG-----GGGTGTTTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAAActtttcctcattttaatagtaaaaacagccacaacaagaaaaacacccctaggcggagatttcatatgctaatgatacatgcgatgggtgttaca-ccat i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24909759 255 - 73212453 TGATGTAGCTTTCCCAATCTCTAGCCAA-TTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATGCCTTCCTGGGGTG-----GGGTGTGTGGAAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTTAAGGTTCAGCTTATAGtaaccttttcctcattttaatagtaaaaacaaccgcaacaagaaaaacacccctatgtggagatttcatatgctaatgatacatgcgatgggtgttaga-ccac i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112518 260 - 81552678 TGATGTAGCTTCCCCAATCTCTAGCCAGTTTGCACTAAAAGCCCAAGAAACTATTAACTACAAATTCCTTCCtgggatggg--tgggtgggtgggagggtgggCAGGGACTTCGCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAAacttttcctcattttaatagtaaaaacaaccacaacaagaaaaacacccctaggtggagatttcatatgctaatgatacatgcgatgggtgttagacccat i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53223405 256 + 80904711 TGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAGTTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGTAAcctttgcctcattttaacagtaaaaacagccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccat i rheMac3.chr16 C 0 I 3 s macFas5.chr16 52788103 256 + 80997621 TGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAGTTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGTAAcctttgcctcattttaacagtaaaaacagccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccat i macFas5.chr16 C 0 I 3 s papAnu2.chr16 47792928 256 + 74645514 TGATGTAGCTTCCCCAATCTCCAGCCAATTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATTCCTTCCTGGGGTG-----GGGTGTGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCAAGGTTCAGCTTATAGTAACCTTTGCCTCATTTTAACAGTAAAAACAGCCACAACAAGAAAAACACCCCTAGGTGGAGATTTTATATGCTAATCATCCATGCGATCGGTGTTAGA-CCAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055360 256 - 75148670 TGATGCAGCTTCCCCAATCTCCAGCCAGTTTGCACCAAAAGCCCAAGAAACTCTTAACTACAAATTCCTTCCTGGGGTG-----GGGTATGTGGGAGGGTGGGCAGGGACTTCTCTGGGGTCCTGCATGCACAGCTAGGCTCGAGGTTCAGCTTATAGtaacctttccctcattttcatagtaaaaacaaccacaacaagaaaaacacccctaggtggagattttatatgctaatcatccatgcgatcggtgttaga-ccac i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942312 261 + 159171411 TGATGTAGCTTCCCAAATCTCTAGCCAATTTGCACCAAAAGCCCAAGAAACTATTAGCTACGAGTTCCTTCCTGAGGTGGGATAGGGTGGGTGGGAAGGTGGCCAGGGAATTCTCTGGGATCCTGCATGCACAGCTAGGCTCAAGGTTCAGcttatagtaaccttttccttattttaatggtaaaaagaacaacaagaagaaaaacatccctagatggagattttatatgttgatgatagatacgatgggtgttgga-ccat i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I a score=432584.000000 s hg38.chr17_JH159146v1_alt 266260 148 + 278131 gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcaccagtattttatgattatgtacgtatagctcccataaaaggaattcctcttacagcactagctgctgtctctcccactgagcaccccactctg s panTro4.chr17 66388000 148 - 82630442 gtggatcctgagcacgtgtgccaaccgcaggtctgcctttgcatacttgacctcaccggtattttatgattatgtatgtatagctcccataaaaggaattcctcttacagcactagctgctgtctctcccactgagcagcccactctg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910014 148 - 73212453 gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcacacttgacctcaccagtattttatgattatgtatgtatagctcccataaaaggaattcctcttacagcactagctgctgtctctcccactgagcagcccactctt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112778 148 - 81552678 gtggatcctgagcacatgtgccaaccgcaggtctgcctttgcatacttgacctcgccagtattttttgattatgtatgtgtagctcccataaaaggaatccctcttacagcactagctgctgtctctcccattgagcagcccactctg i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53223664 148 + 80904711 gtggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatggttatatatgtatagctctcatgaaaggaattcctcttacagcactagatgctgtctctcccactgagaagcccactctg i rheMac3.chr16 I 3 I 26 s macFas5.chr16 52788362 148 + 80997621 gtggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatgattatatatgtatagctctcatgaaaggaattcctcttacagcactagatgctgtctctcccactgagaagcccactctg i macFas5.chr16 I 3 C 0 s papAnu2.chr16 47793184 148 + 74645514 GTGGATACTGAGCACATGTGCCAACCGCAGGTCTGCTTTTGCATACTTGACCTCACCAgtattttatgattatatatgtatagCTCTCATGAAAGGAATTCCTCTTACAGCACTAGATGCTGTCTCTCCCACTGAGAAGCCCACTCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055616 148 - 75148670 atggatactgagcacatgtgccaaccgcaggtctgcttttgcatacttgacctcaccagtattttatgattacatatgtatagctctcatgaaaggaattcctcttacagcgctagatgctgtctctcctgctgagaagcccactctg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942573 141 + 159171411 gacaatcctgggcacatatgccaactgcaggtctgtctttgcatacatgacctcaccagtattttatgattatgcatgtatagctcccataaaaggaacttgtcttacagcactagcttctggctcaccttttga-------actctg i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I a score=2629.000000 s hg38.chr17_JH159146v1_alt 266408 3 + 278131 cct- s panTro4.chr17 66388148 3 - 82630442 cct- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910162 3 - 73212453 cct- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112926 3 - 81552678 cct- i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52788510 3 + 80997621 TCT- i macFas5.chr16 C 0 I 16 s papAnu2.chr16 47793332 3 + 74645514 TCT- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055764 3 - 75148670 tct- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942714 3 + 159171411 -ctt i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e rheMac3.chr16 53223812 26 + 80904711 I a score=6450.000000 s hg38.chr17_JH159146v1_alt 266411 4 + 278131 ctca s panTro4.chr17 66388151 4 - 82630442 ctca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910165 4 - 73212453 ctca i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112929 4 - 81552678 ctca i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47793335 4 + 74645514 TTCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055767 4 - 75148670 ctcA i chlSab2.chr16 C 0 I 12 s calJac3.chr5 112942717 4 + 159171411 ctta i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e macFas5.chr16 52788513 16 + 80997621 I e rheMac3.chr16 53223812 26 + 80904711 I a score=2515.000000 s hg38.chr17_JH159146v1_alt 266415 5 + 278131 aagag s panTro4.chr17 66388155 5 - 82630442 aagag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910169 5 - 73212453 aaggg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112933 5 - 81552678 atggg i nomLeu3.chr19 C 0 C 0 s papAnu2.chr16 47793339 5 + 74645514 GACAG i papAnu2.chr16 C 0 I 8 s calJac3.chr5 112942721 5 + 159171411 aagtg i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e chlSab2.chr16 10055771 12 - 75148670 I e macFas5.chr16 52788513 16 + 80997621 I e rheMac3.chr16 53223812 26 + 80904711 I a score=171910.000000 s hg38.chr17_JH159146v1_alt 266420 220 + 278131 tacttttgctttgcaacaaatttcttcgctt-----------------actcttactttggatttgctctcaaattcttttgcacagcaaattcaagaacctgaactggtccaccgacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGATGAGATGTGCCTTTTAAATTTGACACAGAAGAGTGAGGAGT s panTro4.chr17 66388160 220 - 82630442 tacttttgctttgcaacaaatttcttcgctt-----------------actcttactttggatttgctctcaaattcttttgcacagcaaattcaagaacctgaactggtccaccaacaacaAAATAACCAAATTCCCTTATATAACTTTCGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGATGAGATGTGCCATTTAAATTTGACACAGAAGAGTGAGGAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910174 214 - 73212453 tacttttgctttgcaacaaacttcttcactt-----------------actcttactttggatttgctctcaaattcttttgcacagcaaattaaagaaactgaacTG----ATCGACAACAAAATAACAAAATTCCCT--TATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAGTAGGATGAGATGTGCCTTTTAAATTTGACACAGAAGAGTGAGGAGT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48112938 218 - 81552678 tacttttgctttgcaacaaacttcttccctt-----------------actcctactttggattggccctcaaattcttttgcacagcaaattcaagaacctgaactggtccaccgacaacaAAATAACAAAATTCCCTTATATAACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGGAATGCAATAGGATGAGATGTGCCTTTTGAA--TGACACAGAAGAGTGAGGAGT i nomLeu3.chr19 C 0 C 0 s calJac3.chr5 112942726 234 + 159171411 tactttttctttgcaatgaacttctttgcttactctttggatttgctcactcttactttggatttgctctaaaattcttttgtgcagcaaattcaagaacctgaactggtccac---caacaaAATAACAAAATTCCCTTTTATGACATTTGGAGTCTGCCTTAACTGATTTGAATCAAGATGCAAGGCAGTAGGATGAGATGCACTTTTAAAATTTGACACAGAAGAGTGAGGAGT i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e chlSab2.chr16 10055771 12 - 75148670 I e papAnu2.chr16 47793344 8 + 74645514 I e macFas5.chr16 52788513 16 + 80997621 I e rheMac3.chr16 53223812 26 + 80904711 I a score=1365.000000 s hg38.chr17_JH159146v1_alt 266640 1 + 278131 A s panTro4.chr17 66388380 1 - 82630442 A i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910388 1 - 73212453 A i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48113156 1 - 81552678 A i nomLeu3.chr19 C 0 C 0 s chlSab2.chr16 10055783 1 - 75148670 A i chlSab2.chr16 I 12 C 0 s calJac3.chr5 112942960 1 + 159171411 A i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e papAnu2.chr16 47793344 8 + 74645514 I e macFas5.chr16 52788513 16 + 80997621 I e rheMac3.chr16 53223812 26 + 80904711 I a score=5096.000000 s hg38.chr17_JH159146v1_alt 266641 2 + 278131 TT s panTro4.chr17 66388381 2 - 82630442 TT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910389 2 - 73212453 TT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48113157 2 - 81552678 TT i nomLeu3.chr19 C 0 I 1579 s macFas5.chr16 52788529 2 + 80997621 TT i macFas5.chr16 I 16 C 0 s papAnu2.chr16 47793352 2 + 74645514 TT i papAnu2.chr16 I 8 C 0 s chlSab2.chr16 10055784 2 - 75148670 TT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942961 2 + 159171411 TT i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e rheMac3.chr16 53223812 26 + 80904711 I a score=7312.000000 s hg38.chr17_JH159146v1_alt 266643 4 + 278131 ACCA s panTro4.chr17 66388383 4 - 82630442 ACCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910391 4 - 73212453 ACCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48114738 4 - 81552678 aCCA i nomLeu3.chr19 I 1579 C 0 s macFas5.chr16 52788531 4 + 80997621 ACTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793354 4 + 74645514 ACTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055786 4 - 75148670 ACCG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942963 4 + 159171411 ACCA i calJac3.chr5 C 0 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I e rheMac3.chr16 53223812 26 + 80904711 I a score=79866.000000 s hg38.chr17_JH159146v1_alt 266647 26 + 278131 TGATATCATAAGTTCTAAAATCATGG s panTro4.chr17 66388387 26 - 82630442 TGATATCGTAAGTTCTAAAATCATGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910395 26 - 73212453 TGATATCATAAGTTCTAAAATCATGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48114742 26 - 81552678 TGGTATCATAAGTTCTAAAATCATGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53223838 26 + 80904711 TGATATCCTAAGTTCTAAAATCATGG i rheMac3.chr16 I 26 C 0 s macFas5.chr16 52788535 26 + 80997621 TGATATCCTAAGTTCTAAAATCATGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793358 26 + 74645514 TGATATCCTAAGTTCTAAAATCATGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055790 26 - 75148670 TGATATCCTAAGTTCTAAAATCATGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112942967 26 + 159171411 CGATATCATAAGTTCTAAAATCATGA i calJac3.chr5 C 0 I 484 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I a score=1243479.000000 s hg38.chr17_JH159146v1_alt 266673 459 + 278131 ATGAACTTACAAACAACAATACT-GGGGCTTTACCTATCCCAAAG-----------------------------------------------------------------------------------------CATTCCATATATCAAATTGAAACAATCAAAAGCTTCTATTTTATTTTAGTTTATGCGTGACATTGGAGCAGTTTGGCACTATGAGTTCATCCTTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGTAAACTCAGTGAAAATTATCACAAAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACCAATAAAATAGAAAAATTCTGGCAAACTTGAACAAACAG--AGAC--AAAGAGAGAACAGGGAGAAAGCAGGAGAGCATGGGAGGGGCAGCCTCCTACCTTTCCAAGAGAAAAGAATGACTGAAAGGCTGACAGACAAATAATATGTTT s panTro4.chr17 66388413 459 - 82630442 ATGAACTTGCAAACAACAATACT-GGGGCTTTACCTATCCCAAAG-----------------------------------------------------------------------------------------CATTCCATATATCAAATTGAAACAATCAAAAGCTTCTATTTTATTTTAGTTTATGCATGACATTGGAGCAGTTTGGCACTATGAGTTCATCCCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACAGCATTCCCACCTCACCCCCATGAATCAGTAAACTCAGTGAAAATTATCCCAAAAAAATGCAAAAAAC---AATTAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAACTTGAACAAACAG--AGAC--AAAGAGAGAACAGGGAGAAAGCAGGAGAGCATGGGAGGGGCAGCCTCCTACCTTTCCAAGAGAAAAGAATGACTGAAAGGCTGACAGACAAATAATATGTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910421 543 - 73212453 ATGAACTTACAAACAACAATACT-GGGGCTTTACCTATCCCAAATCATTCCACACATCAAAATGAAACAATGAAAAGCTTCTATTTTATTTTAGTTTGTCTGTGACATTACTAGGGGTTTTACTTATCCCAAACCATTCCATATATCAAACTGAAACAATCAAAAGCTTCTATTTTATTTTAGTTTATGTGTGACACTGGAGCAGTTTGGCACTATGAATTCATACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCTTTCTACTGCATTCCCACCTCACCCCCATAAATCAGTAAACTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACAAAATAAAGATAAAGTACTAACAAAATAGAAAAATTCTGGCAAACTTGAACAAACAG--AGAC--AAAGAGAGAACAGGGAGAAAGCAGCAGAGCATGGGAGGGGCAGCCTCCTACCTTTCCAAGAGAAAAGAATGACTGAAAGGCTGACAGAC----AATATGTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48114768 459 - 81552678 ATGAACTTATAAACAACAATACTGGGGGCTTTACCTATCCCAAGC-----------------------------------------------------------------------------------------CATTCCATATATCACATTGAAACAATCAACAGCTTTTATTTTATTTTAGTTTATGTGTGACATGGGAGCAGTTTGGCACTATTAGTTCATACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGTAAATTCAGTGAAAATTATCAC-AAAAAATGCAAAAAAC---AATAAAAGATTTCTAAATGAAAAGTTTAATACAATATATTTTGTGAACACAATAAAGATAAAGAACTAATAAAATAGAAAAATTCTGGCAAATTCGAACAAACAG--AGACAGAAAGAGAGAACAGGGAGAAAGCAGGAGAGCTTGGAAGGGGCAGCCTCCTCCCATTACAAGAGAAAAGAATGACTGAAAGGCTGACAGACAAATA--ATGTTT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53223864 459 + 80904711 ATGAACTTATAAACAACAATACTGGGGGCTTTACCTATCCGAAAG-----------------------------------------------------------------------------------------CATTCCATTTATCAAATTGAAACAGTGAAAAGCTTCTATTTTATTTTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCACAAAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACAATAAAGA------ACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGC--AAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAATGGCTGACAGACAAATAATATGTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52788561 458 + 80997621 ATGAACTTACAAACAGCAATACTGGGGGCTTTACCTATCCGAAAG-----------------------------------------------------------------------------------------CATTCCATTTATCAAATTGAAACAGTGAAAAGCTTCTATTTTATTGTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCAC-AAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACAATAAAGA------ACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGC--AAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAATGGCTGACAGACAAATAATATGTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793384 458 + 74645514 ATGAACTTATAAACAGCAATACTGGGGGCTTTACCTATCCGAAAG-----------------------------------------------------------------------------------------CATTCCATATATCAAATTGAAACAGTGAAaagcttctattttattttagttgatcTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGaaagtaatcac-aaaaaatacaaaaaacaataataaaagatttctacatgaaaagtttaataaaatatattttgtgaacACAATAAaga------actaataaaatagaaaaatgctgGCAAACGTGATCAAAcagaaaggc--aaagagagagcagGGAGAAAGCAGGAGAGCATGGGAGGCGGAGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAAAGGCTGACAGACAAATAATATGTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10055816 458 - 75148670 ATGAACTTATAAACAGCAATACTGGGGGCTTTACCTATCCAAAAG-----------------------------------------------------------------------------------------CATTCCATATATCAAATTGAAACAGTGAAAAGCTTCTATTTTATTTTAGTTGATCTGTGACATTGGAGCAGTTTGGCACTATGAGTTCACACCTGAAGTCTTACTTTGGAATCATGCTTTGAGAATCCCCTTCTACTGCATTCCCACCTCACCCCCATGAATCAGAAAACTCAGTGAAAGTAATCAC-AAAAAATACAAAAAACAATAATAAAAGATTTCTACATGAAAAGTTTAATAAAATATATTTTGTGAACACAATAAAGA------ACTAATAAAATAGAAAAATGCTGGCAAACGTGATCAAACAGAAAGGC--AAAGAGAGAGCAGGGAGAAAGCAGGAGAGCATGGGAGGCGGGGCCTCCTACCTTTGCAAGAGGAAAGAATGACTGAAAGGCTGACAGATAAATAATATGTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943477 457 + 159171411 atgaacTTATAAACTACAATATG-GGGGCTTTACCTACCCCAAAC-----------------------------------------------------------------------------------------CATTCTGCTTATTCAACTAAAACAATGAAAAGCTTCTATTTTATTTTAGTTTATCTGTGACATGAGAGCAGTTTGGCAC--TGAGTTTATATCTGAAGTCTTACTTTGGAGTCAGGCTTTGAGATTCCCCTTCCACTGCATTCCCACCTGACCTCAATGAATCAGTAAACCCAATGCATATAATCAC-AAAAAATATGACAAACAATAATAAAAGATTTTTAAATGAAAAGTTTAATAAAATCTACTTTGTGAACACAATAATGATAAAGAAGTAATAAAACAGAAAAAGTCTGGCAAACCTGTTCAGAGAG--AG----GAAGAGGGAGCAGGGAGAAAGCACGAGAGCATGTGAGGGGCAGCCTCCTATCTTTATAAGAGAAAAGAATGACTGAAAGGCTGATAGACAAATAACATTTTT i calJac3.chr5 I 484 C 0 e canFam3.chr9 21605791 107 + 61074082 I e mm10.chr11 22456485 0 - 122082543 I a score=9660.000000 s hg38.chr17_JH159146v1_alt 267132 4 + 278131 GAAA s panTro4.chr17 66388872 4 - 82630442 GAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910964 4 - 73212453 GAAA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115227 4 - 81552678 GAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53224323 4 + 80904711 GATA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789019 4 + 80997621 GATA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793842 4 + 74645514 GATA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056274 4 - 75148670 GAAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943934 4 + 159171411 GAAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39468868 4 - 61074082 GAGT i canFam3.chr9 T 12828 C 0 e mm10.chr11 22456485 0 - 122082543 I a score=172338.000000 s hg38.chr17_JH159146v1_alt 267136 56 + 278131 TGGAGATAATGTGTACCTCACTGGGAAGGATATTCTGTAGGCTCAAAACGA-TTTAA- s panTro4.chr17 66388876 56 - 82630442 GGGCGATAATGTGTACCTCACTGGGAAGGATATTCTGTAGGCTCAAAACAA-TTTAA- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24910968 57 - 73212453 GGTAGATAATGTGTACCTCATTGGGAAGGATAACCTATAGGCTCAAAATGATTTTAA- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115231 56 - 81552678 GGGAGATAATGTCTACCTCATTGGGAAGGATATTCTGTAGGCTCAAAATGA-TTTTA- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53224327 56 + 80904711 GGGAGATAATGTCTACCTCATTGGgaaggatactctatcggctcaaaatga-tttaa- i rheMac3.chr16 C 0 I 6280 s macFas5.chr16 52789023 56 + 80997621 GGGAGATAATGTCTACCTCATTGGgaaggatactctatcggctcaaaatga-tttaa- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793846 56 + 74645514 GGGAGATAATGTCTACCTCATTGGGAAGGATACTCTATCGGctcaaaatga-tttaa- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056278 56 - 75148670 GGGAGATAATGTCTACTTCAATGGgaaggatactctatcggctcaaaatga-tttaa- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943938 56 + 159171411 GGGAAATAATGTCTACCTCATTGGGAAGGACAATTTATAGGCTCAAAATGA-TGAAG- i calJac3.chr5 C 0 C 0 s mm10.chr11 99627356 56 + 122082543 TGTAGAAAGTGTCTTATTTACTGGGAAGAATAATTTAGAGCTACAAAGTCA-ATCCA- i mm10.chr11 T 7702 C 0 s canFam3.chr9 39468872 54 - 61074082 TGCAGATAAT---CATTTTGTTAGGAAGGATAATCTAGAGCCCCAAAGTGA-TAAGGA i canFam3.chr9 C 0 C 0 a score=1498924.000000 s hg38.chr17_JH159146v1_alt 267192 393 + 278131 AAAATGAGGAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--TTTCATATTTGGTGCCATGACTGGAAGAGAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCACAGAGTCAGTGG--GATGGTGATGGGCTCATTGGAAACATGAAGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATAGTCAGCACAGAAGAATGGTCTACAACTGTGGGCCTGCAGTGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAGAGGA---GGCACAGCACAAGGGGCGGGGGCAGCTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCCGCCACAGACTGGACGCAG s panTro4.chr17 66388932 391 - 82630442 AAAATGAGGAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--TTTCATATTTGGTGCCATGACTGGAAGAGAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCAC--AGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAAATCCAACCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATATTCAGCACAGAAGAATGGTCTACAACTGTGGGCCTGCAGTGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAGAGGA---GGCGCAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24911025 393 - 73212453 AAAATGAGGAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--TTTCATATTTGGTGCCATGACTGGAAGAAAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCACAGATTCAGTGG--GATGGTGATGGGCTCATTGGAAACATGAAGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATAGTCAGCACAGAAGAATGGTCTACAACTGTGGGCCTGCGGTGAAGGGAGAGATGAGCC--AGGGC-AGTGGGCTCAGCAGCAAAAGGA---GGCACAGCACATGGGGCGGGGGCAGGTGGAGATGATGCAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115287 393 - 81552678 AAAATGAGGAATTTAGAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--ATTCGTATTTGGTGCCATGACTGGAAGAAAAAGAAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATATCTTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAGGTCCACCCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATAGTCAGCACAGAAGAATCGTCTACATCTGTGGGCTTGCGGTGAAGGGAGAGATGAGCC--AGGGT-ACTGGGCTCAGCAGCAAGAGGA---GGCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688090 391 - 80904711 AAAATAAGGAAATTAGAGGATTGGAATAATTTCTTAGTTAGTGGATTACAAATTA--ATTTCTATTTGGTGCTACCACTGGAAGAAAAAGAAAGCAAGGGAGGGAGCTTAAAATGAACCAGAATATTCT--CAGAGTCAGTGA--AATGGTGATGGGCTCATTGGAAACATGAGGTCCATCCTATTGAATGACATCAACCCCACTCCATGTGTCCTAATAGCCAGCATAGTAGAAGGGTCTGCATCTGTGGGCCAGCAGTGAAGGGGGAGGTGAAGC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGCGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i rheMac3.chr16 I 42042 C 0 s macFas5.chr16 52789079 384 + 80997621 aaaatgaggaatttagaggattggaataatttcttagctagtgaattacaaatta--attcacatttggtgccatgactggaagaaaaagaaagcaagggagggagtttacaatgaaccagaatgttctcacagagtCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ACCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCA-CACAGAAGAAGGGTCTACATCTGTGGGCCAGCGGTGAAGGGGGAGGTGAGCC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGCGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47793902 385 + 74645514 aaaatgaggaatttAGAGGATTGGAATAATTTCTTAGCTAGTGAATTACAAATTA--ATTCACATTTGGTGCCAtgactggaagaaaaagaaagcaagggagGGAGTTTACAATGAACCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ACCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCAGCACAGTAGAAGGGTCTGCATCTGTGGGCCAGCGGTGAagggggaggtgagcc--agggc-agggggttcagcagcaagagga---ggcgcagcacaaggggcgggggcAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056334 385 - 75148670 aaaatgaggaatttagaggattggaataatttcttagctagtgaattacaaatta--attcacatttggtgccatgactggaagaaaaagaaagcaagggagggagtttacaatgaaccagaatgttctcacagagtCAGCGG--GATGGTGATGGGCTCATTGGAAACA--------ATCCTGCTGAATGACATCAACCCCACTCCATGTGTCCTCATAGCCAGCACAGAAGAAGGATTTACATCTGTGGGCCAGCAGTGAGGGGGAAGGTGAGCC--AGGGC-AGGGGGCTCAGCAGCAAGAGGA---GGTGCAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112943994 394 + 159171411 AGAATGAAGACTTTACAGGATTGGAATAATTTCTTAGCTAGTGGATTACAAATTA--ATTCCTATTTGGTTCCATCACTGGAAGAAAAAGAAAGTAAGGGAGGGAGTTTAAAAGGAATCAGAATGTTCTCACAGAGTCAGCGG--GATGGTGATGGGCTCATTGGAAACATGAGGTCTACCCTGTGGAGTGACATCAATCCCACTCCATGAATCCTAATGGTCAGCACAGAAGAAAGGTCTACATCTGTGGGCCAGCAGTGAAGGGAGAGGTGAGCC--AGGGCAAGTGGGCTCAGCAGCAAGAGGA---GGTGCAGCACATGGGGCGGGGACAGGTGGAAATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGACACTCGGCCACAGACTGGACgcag i calJac3.chr5 C 0 C 0 s mm10.chr11 99627412 371 + 122082543 -----------TTTGGAGAACTAGGATGAATTCTTAGCTCACAACTTAGAGATTA--ATTTCAGCACAGTGCAAACATTAGAAAGACATGGTAGCAAACAAGAGAATGTAATGTGAGCCAGGAGGTGTTGACTGATTCTGCGGAAGATGGT----GGCTCACAAGAATTGTGTGGTCCATCCTGCTAAATGATGCCAAACAGATTCCACGTGTCCTACGGGTTCACATGCAAGAATGGTACATATCTGT-------------ACGTGGAGATGTGCC-TAGATT-AGGGATCTCAGCAGCAGCAGGGTGTGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAGACTGGTCTCAG i mm10.chr11 C 0 I 2 s canFam3.chr9 39468926 392 - 61074082 AGAATGACAAATTTAGAGGAATGGGATAATTTTTTAGCTGATAGGTTACAAATTAATATACATATTTGGTGCCAATACTGAAAGGAAAAGATAATAATGGAAGGAGCTTAACATAAACCAGAATGTACT----GAGTCAATGG--GATGGTGGTGGGATCCCTGGAATCATGAGGCTCAA-CTGTTCAATGATGTTAACCAGACTCCATGTGTCCTAACACTCAGCGCAAAAGAAGGGTCTTTATCTGTGGGGCAGAGGTAAATGGAAATAGTGGTCACAGGAC-AGGGGGCTCAGCAGGAAGAGGA---GGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGATAGCAGGTAGTGTGGCAGGAGACCCGGCCACAGACTGGGCGCAg i canFam3.chr9 C 0 C 0 a score=7821.000000 s hg38.chr17_JH159146v1_alt 267585 2 + 278131 GC s panTro4.chr17 66389323 2 - 82630442 Gc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24911418 2 - 73212453 gc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115680 2 - 81552678 GC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688481 2 - 80904711 gc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789463 2 + 80997621 GC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794287 2 + 74645514 GC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056719 2 - 75148670 GC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944388 2 + 159171411 ac i calJac3.chr5 C 0 C 0 s canFam3.chr9 39469318 2 - 61074082 gc i canFam3.chr9 C 0 C 0 e mm10.chr11 99627783 2 + 122082543 I a score=55455.000000 s hg38.chr17_JH159146v1_alt 267587 11 + 278131 AGCAGCAGGGG s panTro4.chr17 66389325 11 - 82630442 agcagcagggg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24911420 11 - 73212453 agcagcagggg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115682 11 - 81552678 AGCAGCAGGGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688483 11 - 80904711 agcagcagggg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789465 11 + 80997621 AGCAGCAGGGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794289 11 + 74645514 AGCAGCAGGGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056721 11 - 75148670 AGCAGCAGGGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944390 11 + 159171411 agcagcagggg i calJac3.chr5 C 0 C 0 s mm10.chr11 99627785 11 + 122082543 agcaacagggg i mm10.chr11 I 2 C 0 s canFam3.chr9 39469320 11 - 61074082 agcaggagggg i canFam3.chr9 C 0 C 0 a score=66224.000000 s hg38.chr17_JH159146v1_alt 267598 26 + 278131 CGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGA s panTro4.chr17 66389336 26 - 82630442 cggcagcagc------------------------------------------------------------tggattcacagcaaga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24911431 26 - 73212453 cggcagcagc------------------------------------------------------------tggattcacagcaaga i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115693 26 - 81552678 CGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688494 26 - 80904711 cggcagcagc------------------------------------------------------------tggattcacagcaaga i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789476 26 + 80997621 CGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794300 86 + 74645514 CGGCAGCAGCTGGATTCACAGCAAGAGGGACGGCAGCAGGTGGAGATGCAGCAGCTGGGGTGGCAGCAGCTGGATTCACAGCAAGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056732 26 - 75148670 CGGCAGCAGC------------------------------------------------------------TGGATTCACAGCAAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944401 56 + 159171411 cggcagcagctggattcacagcaagaggggcggcagcagc------------------------------tggattcacagcaaga i calJac3.chr5 C 0 C 0 s mm10.chr11 99627796 20 + 122082543 cggcaacagg------------------------------------------------------------gg------cggcagca i mm10.chr11 C 0 C 0 e canFam3.chr9 39469331 0 - 61074082 C a score=27290.000000 s hg38.chr17_JH159146v1_alt 267624 7 + 278131 GGGGCGG s panTro4.chr17 66389362 7 - 82630442 ggggcgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24911457 7 - 73212453 ggggtgg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115719 7 - 81552678 GGGGTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688520 7 - 80904711 ggggcgg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789502 7 + 80997621 GGGGCGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794386 7 + 74645514 GGGACGG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65100982 7 + 75148670 GGGGCGG i chlSab2.chr16 T 267 C 0 s calJac3.chr5 112944457 7 + 159171411 ggggcgg i calJac3.chr5 C 0 C 0 s mm10.chr11 99627816 7 + 122082543 gggacgg i mm10.chr11 C 0 C 0 e canFam3.chr9 39469331 0 - 61074082 C a score=76949.000000 s hg38.chr17_JH159146v1_alt 267631 28 + 278131 CAGCA------GCTGGAGATGCTGCAGCTGGGGT s panTro4.chr17 66389369 28 - 82630442 cagca------gctggagatgctgcagctggggt i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48115726 28 - 81552678 CAGCT------GCTGGAGATGCAGCAGCTGGGGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688527 28 - 80904711 cagca------gctggagatgcagcagctggggc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789509 28 + 80997621 CAGCA------GCTGGAGATGCAGCAGCTGGGGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794393 28 + 74645514 CAGCA------GCTGGAGATgcagcagctggggc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65100989 28 + 75148670 CAGCA------GCTGGAGATGCAGCAGCTGGGGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944464 28 + 159171411 cagca------gctggagatgcagcagctggggc i calJac3.chr5 C 0 C 0 s mm10.chr11 99627823 34 + 122082543 cagcaggggcggcagcaggggctgcagcaagggc i mm10.chr11 C 0 C 0 e ponAbe2.chr17 24911464 0 - 73212453 C e canFam3.chr9 39469331 0 - 61074082 C a score=222491.000000 s hg38.chr17_JH159146v1_alt 267659 62 + 278131 GGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACA s panTro4.chr17 66389397 62 - 82630442 ggcagcaggtgggctggcagcacacagactggcagcactggggtctgcagcagctggacaca i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48331592 62 + 73212453 GGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACA i ponAbe2.chr17 n 0 C 0 s nomLeu3.chr19 48115754 62 - 81552678 GGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688555 62 - 80904711 ggcagcaggtgggctggcagcacacagactggcagcactggggcctgcagcagctggacaca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789537 62 + 80997621 GGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAACACTGGGGCCTGCAGCAGCTGGACACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794421 62 + 74645514 ggcagcaggtgggctggcagcacacagactggcagcactggggcctgcagcagctggacaca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65101017 62 + 75148670 GGCAGCAGGTGGGCTGGCAGCACACAGACTGGGAGCACTGGGGCCTGCAGCAGCTGGACACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944492 62 + 159171411 gacagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA i calJac3.chr5 C 0 C 0 s mm10.chr11 99627857 56 + 122082543 tgcagcagggg---cggcagca---ggggcggcagcagcTAGAACCACAGCAGCTGGAGCTA i mm10.chr11 C 0 C 0 e canFam3.chr9 39469331 0 - 61074082 C a score=109128.000000 s hg38.chr17_JH159146v1_alt 267721 25 + 278131 CAGCAGCTGGGGCGACAGCAGCTGG s panTro4.chr17 66389459 25 - 82630442 cagcagctggggcgacagcagctgg i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48331654 25 + 73212453 CAGCAGCTGGGGCGACAGCAGCTGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115816 25 - 81552678 CAGCAGCTGGGGCGACAGCAGCTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688617 25 - 80904711 cagcagctggggcggcagcagGTGG i rheMac3.chr16 C 0 I 20 s macFas5.chr16 52789599 25 + 80997621 CAGCAGCTGGGGCGGCAGCAGGTGG i macFas5.chr16 C 0 I 9 s papAnu2.chr16 47794483 25 + 74645514 cagcagctggggcggcagcagctgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65101079 25 + 75148670 CAGCAGCTGGGGCGGCAGCAGCTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944554 25 + 159171411 CAGCAGCTGGGGCGGCAGCAACTGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99627913 25 + 122082543 CCACAGGAAGGTCGACAGCAGCTGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39469331 25 - 61074082 cagcaggaggggcggcagcagctag i canFam3.chr9 C 0 C 0 a score=29053.000000 s hg38.chr17_JH159146v1_alt 267746 13 + 278131 AGATG------CAGCATCT s panTro4.chr17 66389484 13 - 82630442 agatg------cagcagct i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48331679 13 + 73212453 AGATG------CAGCACCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115841 13 - 81552678 AGATG------CAGCAGCT i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52789633 19 + 80997621 AGGTGGTCTGACAGCAGCT i macFas5.chr16 I 9 C 0 s papAnu2.chr16 47794508 13 + 74645514 agatg------cagcagct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 65101104 13 + 75148670 ------ACACACAGCAGCT i chlSab2.chr16 C 0 n 0 s calJac3.chr5 112944579 13 + 159171411 AGATG------CAGCAGCT i calJac3.chr5 C 0 C 0 s mm10.chr11 99627938 13 + 122082543 AAATG------CAGCAACT i mm10.chr11 C 0 C 0 s canFam3.chr9 39469356 13 - 61074082 agcca------caggagct i canFam3.chr9 C 0 C 0 e rheMac3.chr16 27688642 20 - 80904711 I a score=271204.000000 s hg38.chr17_JH159146v1_alt 267759 77 + 278131 GGGGCGG------------------------------CAGCAAGTGGGCTGGCAGCACATAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGG--------------- s panTro4.chr17 66389497 77 - 82630442 agggcgg------------------------------cagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGCTGG--------------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48331692 107 + 73212453 AGGGCGGCAGCAGGTCATCTCACAGCACCTGGGGCGACAGCAGGTGGGTTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAACAGCTGG--------------- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115854 77 - 81552678 GGGGCGG------------------------------CAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGG--------------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53230663 75 + 80904711 --TCCTG------------------------------CAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACAcagcagctgg--------------- i rheMac3.chr16 I 6280 C 0 s macFas5.chr16 52789652 77 + 80997621 GGGGCGG------------------------------CAGCAGCTGGGCTGACAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGG--------------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794521 77 + 74645514 ggggcgg------------------------------cagcaggtgggctgacagcaCACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGG--------------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056758 77 - 75148670 GGGGCGG------------------------------CAGCAAGTGGGCTGGCAGCACACAGACTGGGAACACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGG--------------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944592 47 + 159171411 GGGGCGG------------------------------CAGCAGGT------------------------------GGTCCTGCAGCAGGTGGTCTGACAGCAGCTGG--------------- i calJac3.chr5 C 0 C 0 s mm10.chr11 99627951 77 + 122082543 GGGGCGG------------------------------CAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAACTGGGTCTGCAGCAGCTAG--------------- i mm10.chr11 C 0 I 13 s canFam3.chr9 39469369 92 - 61074082 ggagcca------------------------------cagcaggaggggcggcagcagctagagatgcagcagctgggcctgcagcagctggagccacagcagctggaactggagcaggagg i canFam3.chr9 C 0 C 0 a score=18123.000000 s hg38.chr17_JH159146v1_alt 267836 5 + 278131 GGCGA s panTro4.chr17 66389574 5 - 82630442 GGCGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48331799 5 + 73212453 GGCGG i ponAbe2.chr17 C 0 I 123 s nomLeu3.chr19 48115931 5 - 81552678 GGCGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53230738 5 + 80904711 ggcgg i rheMac3.chr16 C 0 T 4977 s macFas5.chr16 52789729 5 + 80997621 GGCGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794598 5 + 74645514 GACGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056835 5 - 75148670 GGCGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944639 5 + 159171411 GGCGG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39469461 5 - 61074082 ggcgg i canFam3.chr9 C 0 C 0 e mm10.chr11 99628028 13 + 122082543 I a score=19738.000000 s hg38.chr17_JH159146v1_alt 267841 15 + 278131 CAGCAGCTGGAGATG s panTro4.chr17 66389579 15 - 82630442 CAGCAGCTGGAGATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24911464 15 - 73212453 cagctgctggagatg i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115936 15 - 81552678 CAGCAGCTGGAGATG i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52789734 15 + 80997621 CAGCAGGTGGTCCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794603 15 + 74645514 CAGCACGTGGTCCTG i papAnu2.chr16 C 0 I 15 s chlSab2.chr16 10056840 15 - 75148670 CAGCAGGTGGTCCTG i chlSab2.chr16 C 0 I 15 s calJac3.chr5 112944644 3 + 159171411 CAG------------ i calJac3.chr5 C 0 C 0 s canFam3.chr9 39469466 15 - 61074082 cagcagctagagatg i canFam3.chr9 C 0 C 0 e mm10.chr11 99628028 13 + 122082543 I e rheMac3.chr16 53230743 4977 + 80904711 T a score=75004.000000 s hg38.chr17_JH159146v1_alt 267856 27 + 278131 CAGCATCTGGGGCGGCAGCAGGTGGGC s panTro4.chr17 66389594 27 - 82630442 CAGCATCTGGGGCGGCAGCAGGTGGGC i panTro4.chr17 C 0 I 120 s ponAbe2.chr17 24911479 27 - 73212453 cagcagctggggcggcagcagGTGGGC i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115951 27 - 81552678 CAGCATCTGGGGCGGCAGCAGGTGGGC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688662 27 - 80904711 CAGCAGCTGGGGCGGCAGCAGGTGGGC i rheMac3.chr16 I 20 C 0 s macFas5.chr16 52789749 27 + 80997621 CAGCAGGTGGTCTGGCAGCAGCTGGGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794633 27 + 74645514 CAGCAGCTGGGGCGGCAGCAGATGGGT i papAnu2.chr16 I 15 C 0 s chlSab2.chr16 10056870 27 - 75148670 CAGCAGCTGGGGCTGCAGCAGGTGGGC i chlSab2.chr16 I 15 C 0 s calJac3.chr5 112944647 9 + 159171411 ------------------CAGGTGGGC i calJac3.chr5 C 0 C 0 s canFam3.chr9 39469481 27 - 61074082 cagcagctgggcctgcagcagctggag i canFam3.chr9 C 0 C 0 e mm10.chr11 99628028 13 + 122082543 I a score=88372.000000 s hg38.chr17_JH159146v1_alt 267883 26 + 278131 TGGCAGCACACAGACTGGCAGCACTG s panTro4.chr17 66389741 26 - 82630442 TGGCAGCACACAGACTGGCAGCACTG i panTro4.chr17 I 120 C 0 s ponAbe2.chr17 24911506 26 - 73212453 TGGCAGCACACAGACTGGCAGCACTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48115978 26 - 81552678 TGGCAGCACACAGACTGGCAGCACTG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688689 26 - 80904711 TGGCAGCACACAGACTGGCAGCACTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789776 26 + 80997621 TGACAGCACACAGACTGGCAGCACTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794660 26 + 74645514 TGGCAGCACACAGACTGGCAGCACTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056897 26 - 75148670 TGGCAGCACACAGACTGGCAACACTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944656 26 + 159171411 TGGCAGCACACAGACTGGCAGCACTG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39469508 26 - 61074082 ccacagcagctggaactggagcagga i canFam3.chr9 C 0 C 0 e mm10.chr11 99628028 13 + 122082543 I a score=124845.000000 s hg38.chr17_JH159146v1_alt 267909 27 + 278131 GGGCCTGCAGCAGCTGGACACACAGCA s panTro4.chr17 66389767 27 - 82630442 GGGCCTGCAGCAGCTGGACACACAGCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24911532 27 - 73212453 GGGCCTGCAGCAGCTGGACACACAGCA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48116004 27 - 81552678 GGGCCTGCAGCAGCTGGACACACAGCA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688715 27 - 80904711 GGGCCTGCAGCAGCTGGACACACAGCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789802 27 + 80997621 GGGCCTGCAGCAGCTGGACACACAGCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794686 27 + 74645514 GGGCCTGCAGCAGCTGGACACACAGCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056923 27 - 75148670 GGGCCTGCAGCAGCTGGACACACAGCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944682 22 + 159171411 GGGCCTGCAGCAGCTGGGAGCA----- i calJac3.chr5 C 0 C 0 s mm10.chr11 99628041 27 + 122082543 GGGCCTGCAGCAGCTGGACACACAGCA i mm10.chr11 I 13 C 0 s canFam3.chr9 39469534 27 - 61074082 ggggcggcagcagctggacacacagca i canFam3.chr9 C 0 C 0 a score=63870.000000 s hg38.chr17_JH159146v1_alt 267936 13 + 278131 GCTGGGGCGACAG s panTro4.chr17 66389794 13 - 82630442 GCTGGGGCGACAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24911559 13 - 73212453 GCTGGGGCGGTAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48116031 13 - 81552678 GCTGGGGCGGCAG i nomLeu3.chr19 C 0 I 420 s rheMac3.chr16 27688742 13 - 80904711 GCTGGGGCGACAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789829 13 + 80997621 GCTGGGGCGACAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794713 13 + 74645514 GCTGGGACGACAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056950 13 - 75148670 GCTGGGGCGGCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46241208 13 - 159171411 gctggggcggcag i calJac3.chr5 T 55 C 0 s mm10.chr11 99628068 13 + 122082543 GCTGGGGCGGCAG i mm10.chr11 C 0 C 0 s canFam3.chr9 39469561 13 - 61074082 gctggggcggcag i canFam3.chr9 C 0 C 0 a score=64112.000000 s hg38.chr17_JH159146v1_alt 267949 15 + 278131 TAGGTGGTCCTGCAG s panTro4.chr17 66389807 15 - 82630442 CAGGTGGTCCTGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24911572 15 - 73212453 CAGGTGGTCCTGCAG i ponAbe2.chr17 C 0 M 292 s nomLeu3.chr19 48116464 15 - 81552678 CAGGTGGTCTCACAG i nomLeu3.chr19 I 420 C 0 s rheMac3.chr16 27688755 15 - 80904711 CACGTGGTCCTGCAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789842 15 + 80997621 CACGTGGTCCTGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794726 15 + 74645514 CACGTGGTCCTGCAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056963 15 - 75148670 CAGGTGGTCCTGCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46241221 15 - 159171411 caggtggtcctgcag i calJac3.chr5 C 0 C 0 s mm10.chr11 99628081 15 + 122082543 CAGGTGGTCCTACAG i mm10.chr11 C 0 C 0 s canFam3.chr9 39469574 15 - 61074082 caggtggtctggcaa i canFam3.chr9 C 0 C 0 a score=24260.000000 s hg38.chr17_JH159146v1_alt 267964 5 + 278131 CAGGT s panTro4.chr17 66389822 5 - 82630442 CAGGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48331927 5 + 73212453 CAGGT i ponAbe2.chr17 I 123 C 0 s nomLeu3.chr19 48116479 5 - 81552678 CAGCT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688770 5 - 80904711 CAGGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789857 5 + 80997621 CAGGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794741 5 + 74645514 CAGGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056978 5 - 75148670 CAGGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46241236 5 - 159171411 caggt i calJac3.chr5 C 0 C 0 s mm10.chr11 99628096 5 + 122082543 CAGGT i mm10.chr11 C 0 C 0 s canFam3.chr9 39469589 5 - 61074082 caggt i canFam3.chr9 C 0 I 19942 a score=66085.000000 s hg38.chr17_JH159146v1_alt 267969 22 + 278131 GGTCTCACAGCAGCTGGGGCGG s panTro4.chr17 66389827 22 - 82630442 GGTCTCACAGCAGCTGGGGTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48331932 22 + 73212453 GGTCTCCCAGCAGCTGGGGCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48116484 22 - 81552678 GGGATGGCAGCAGGTCTCCTGG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27688775 22 - 80904711 GGTCTGACAGCAGTTTGGGCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789862 22 + 80997621 GGTCTGACAGCAGCTGGGTCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794746 22 + 74645514 GGTCTGACAGCAGCTGGGGCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10056983 22 - 75148670 GGTCTGACAGCAGCTGGGGCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46241241 22 - 159171411 ggtccgacagcagctggggcgg i calJac3.chr5 C 0 T 72529 s mm10.chr11 99628101 18 + 122082543 GGTCTGGCAGCAGCTGGG---- i mm10.chr11 C 0 C 0 s canFam3.chr9 39489536 22 - 61074082 ggtctggcagcaggaggggcgg i canFam3.chr9 I 19942 C 0 a score=13095.000000 s hg38.chr17_JH159146v1_alt 267991 3 + 278131 CAG s panTro4.chr17 66389849 3 - 82630442 CAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48331954 3 + 73212453 CAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48116506 3 - 81552678 CAG i nomLeu3.chr19 C 0 I 353 s rheMac3.chr16 27688797 3 - 80904711 CAG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789884 3 + 80997621 CAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794768 3 + 74645514 CAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057005 3 - 75148670 CAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944704 3 + 159171411 CAG i calJac3.chr5 C 0 C 0 s canFam3.chr9 39489558 3 - 61074082 cag i canFam3.chr9 C 0 C 0 e mm10.chr11 99628119 0 + 122082543 C a score=756909.000000 s hg38.chr17_JH159146v1_alt 267994 207 + 278131 CAGGTCTCCTGGCAGAGGTCTTGGCCACAGCCTTGGTGAGAGCACACGGAGCCACAACAGGAGTTTACCATGGTGTCAGAGGGTGAAGGATCTAGTTGGGTTTCTAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGCCTGTAGTC-CCTTTATACCCTCCTGAAGGCCCATTGCCACCAC-----ATCATTATTTCCTTGTTATTAT s panTro4.chr17 66389852 207 - 82630442 CAGGTCTCCTGGCAGAGGTCTTGGCCACAGCCTTGGTGAGAGCACACGGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGAAGGATCTAGTTGGGTTTCTAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGCCTGTAGTC-CCTTTATACCCTCCTGAAGGCCCATTGTCACAAT-----GTCATTATTTCCTTGTTATTAT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48331957 205 + 73212453 CAGGTCTCCTGGCAGAGGTCTTGGCCGCAGCCCTGGTCAGAGCACACGGAGCCACAACAGGAGTTGACCATGGTGTCAGAAAGGGGAGGATCTGGGTGGGTTTCCAAGAGAGTGAAGTTCTTGGGTTTGGAAGTCTTCTGGGTCCATAGCCTCCTTTATACCCTGCTGAAGGCCCACTGCCACCAC-----GTCATTATTGCCTTATTAT--- i ponAbe2.chr17 C 0 I 113 s nomLeu3.chr19 33444799 208 + 81552678 CAAGTCTCCTGACAGAGGTCTTGGCCGCAGCCCTGGTCAGAGCACACGGAGCCACAACAGGAGTTGACCATGGTGTCAGAACGGGGAGGATCTGGGTGGGTTTCCAAGAGAGTGAAGTTCTTGGGTTTGGAGGTCTTCTGGGTCCATAGCCTCCTTTATACCCTGCTGAAGGCCCATTGCCATCAC-----GTCATTATTTCCTTGTTATTAT i nomLeu3.chr19 T 372 C 0 s rheMac3.chr16 27688800 208 - 80904711 CAGGTCTCCTGGCAGAGGTCTTGGCCGCAGCCCTGGTCAGAGCACACGGAGCCACAACAGGAGTTGACCATGGTGTCAGAATGGGGAGGATCTGGGTGGGTTTCCAAGAGATTGAAGTTCTTGTGTTTGGAAGTCTTCTGGGTCCATAGCCTCCTTTATACCCTGCTGAAGGCCCATTGCCACCAC-----GTCATTATTTCCTTGTTATTAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789887 207 + 80997621 CAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGAAGGATCTACTTGGGTTTCCAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGTCCATATCC-CCTTTATACCCTCCTGAAGGCCCATTGCCACCAC-----GTCATTATTTCCTTGTTATTAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794771 207 + 74645514 CAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGAAGGATCTACTTGGGTTTCCAGGAGAGTGAAGTTCTTGTGTTTGGAAGTCTCCTGGGTCCATATCC-CCTTTATACCCTCCTGAAGGCTCATTGCCACCAT-----GTCATTATTTCCTTGTTATTAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057008 207 - 75148670 CAGGACTCCTGGCAGAGGTCTTGGCCACAGCCCTGGTCAGAACACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGAAGGATCTACTTGGACTTCCAAGATAGTGAAATTCTTGTGTTTGGAAGTCTCCTGGGTCCATATCC-CCTTTATACCCTCCTGAAGGCCCATTGCCACCAC-----GTCATTATATCCTTGTTATTAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944707 206 + 159171411 CAGGTCTCCTGGCAGAGGTCTTGGCCGCAGCCCTGGTCAGAGCACACGGAGCCACAACAGGAATTGACCATGTTGTCAGAAGGTGGAGGATCTGAGTGGGTTTCCAGGAGAGTGAAGTTCTTGGGTTTGGAAGTCTTCTGGGCCTATGACCCCTTTTATACCCTGCTGAAGTCCCATTGCCACCAC-----GTCATTTTTT--TTGTTATTAT i calJac3.chr5 C 0 C 0 s mm10.chr11 99628119 199 + 122082543 --------CTGGCAGCAGCCTTGGCCACAGCTCTCCTCAGAGCAGACAGAGCCACAACAAGAGTTGACCATTGTGTCAGAG-GTGGAGATTCTGGGTGGGTTTCTGAGAGAGTGAAGATGTTGGGTTTGGAAGTCTCCTTGCCCCACGCCCCCTTTTATACCTCGCTGAACACCTCATATGACTAC-----ATCATTATTTCCTTGTTAGTAT i mm10.chr11 C 0 I 1 s canFam3.chr9 39489561 198 - 61074082 cagGTCTCC------------TCGCCACAGCCCTGGTCAGAGCAGACGGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGGAGGTTCTGAT---ACTAGTAAGAGAGTGAGCTTAGTGAATTTGAAAATCCCTCTATGGCTTGTCCTCTTTTATACTCTGTTGAGGCTATTATGTCCTTATTCTGGGCCATTTCCTACTTGTTGTTTT i canFam3.chr9 C 0 C 0 a score=360850.000000 s hg38.chr17_JH159146v1_alt 268201 111 + 278131 ----TTACCTACTGGAAAAATT-AATCATGTAATTACATCATTGTG----TTTCCAGTTAAATACTCCA-AAACAG----------------AGAAAATAA-CCCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCCA s panTro4.chr17 66390059 111 - 82630442 ----TTACCTACTGGAAAAATT-AATCATATAATTACATAATTGTG----TTTCCAGTTAAATACTCCA-AAACAG----------------AGAAAATAA-CCCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCCA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24911886 117 - 73212453 ----TTACTTACTGGAAAAATTAAATCATGTAATCACATAATTGTG-TGTTTCCCAGTTAAATACTCCACAAACAG----------------AGCAAATAACCCCATTTCA-TTTTCCTGCTGTGCTCCTGTGTTTCCA i ponAbe2.chr17 M 292 I 240 s nomLeu3.chr19 33445007 113 + 81552678 ----TTACCACGTGGAAAACTT-AATCATGTAATTACATAATTGTG-TG-TTTCTAGTTAAATACTCCA-AATGAG----------------AGAAAATAA-CCCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27689008 129 - 80904711 ----TTACCTCGTGGAAAACTT-AATCATGTAATTACATCATTGTG-TG-TTTCTAGTTAAATACTCCA-AAACTAACCCATTTAAATATTCAAAAAATAA-CCCATTTCC-TTTTCCTGCTGTGCTCCTGTGTTTCTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52790094 113 + 80997621 ----TTACCTGCTGGAAAAATT-CATCATGTAATTACATAATTGTG-TG-TGTCTAGTTAAATACTCCA-AAACTG----------------AGAAAATAA-CCCATTTCC-TTTTCCTGCTGTGCTCCTGCGTTTCCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47794978 113 + 74645514 ----TTACCTGCTGGAAAAATT-CATCATGTAATTACATAATTGTG-TG-TGTCTAGTTAAATActcca-aaactg----------------agaaaataa-ccCATTTCC-TTTTCCTGCTGTGCTCCTGCATTTCCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057215 113 - 75148670 ----TTACCTGCTGGAAAAATT-CATCATGTAATTACATAATTGTG-TG-TGTCTAGTTAAATACTCCA-AAACTG----------------AGAAAATAA-CCCATTTCC-TTTTCCTGCTGTACTCCTGGGTTTCCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112944913 113 + 159171411 ----TTACCTGCTGGAAAGCTT-AATCATGTAATTACATAATTGTG-TG-TTTCTGGTTAAATACTTCA-AAACAG----------------A-AAAATAA-CACATTTCCTTTTTCCTGCTGTGCTTCTGTGTTTTCA i calJac3.chr5 C 0 C 0 s mm10.chr11 99628319 113 + 122082543 ----TTCCTTCTTGGAAAAGTT-AATTATTTAATTACATAATTGTAATG-TTTCTAGTTAAATACTCCA-AAAGAA----------------AGAAAACAT-GACATTTCT-TTTTCCTGATG-GCTCCTGTGTTTGCA i mm10.chr11 I 1 C 0 s canFam3.chr9 39489759 114 - 61074082 TTCCTTTTCCTAAAGAAATATT-AGTCATTAAATTAGATCACTGTG-TT-TTTCTAGTTAATTATTTTT-AAATAA----------------AGAAAA-AT-GAGATTTCC-TTTTTCTGGTGTGTTA--AGATTTCCA i canFam3.chr9 C 0 C 0 a score=53800.000000 s hg38.chr17_JH159146v1_alt 268312 20 + 278131 TTGGAAATGCATGTCATATT s panTro4.chr17 66390170 20 - 82630442 TTGGAAATGCTTGTCATATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48332275 20 + 73212453 TTGGAAACACTTGCCATATT i ponAbe2.chr17 I 113 C 0 s nomLeu3.chr19 33445120 20 + 81552678 TTGGAAATGCTTGTCATATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27689137 20 - 80904711 TTGGAAACACTTGTCATATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52790207 20 + 80997621 TTGGAAATGCTCGTCATATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795091 20 + 74645514 TTGGAAATGCTCGTCATATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057328 20 - 75148670 CTGGAAATGCTTGTCATATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945026 20 + 159171411 TTGGAAAAGCTTGTCATATT i calJac3.chr5 C 0 I 160 s mm10.chr11 99628432 20 + 122082543 ACTGAAACACTGTTCGCATT i mm10.chr11 C 0 I 1 s canFam3.chr9 39489873 10 - 61074082 --------ATTTGGCCTT-- i canFam3.chr9 C 0 C 0 a score=78497.000000 s hg38.chr17_JH159146v1_alt 268332 32 + 278131 TCTTCATTAGTGGGGAGTCACCTTTGTCCCTG s panTro4.chr17 66390190 32 - 82630442 TCTTCATTAGTGGGGGGTCACCTTTGTCCCTG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48332295 31 + 73212453 TCTTCCTTAGTGGGG-GTCGCCTTTGTCCCTG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 33445140 31 + 81552678 TCTTCCTTAGTGGGG-GTCACCTTTGTCCCTG i nomLeu3.chr19 C 0 n 0 s rheMac3.chr16 27689157 31 - 80904711 TCTTCCCTAGTG-GGGGTCACCTTTGTCCCTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52790227 32 + 80997621 TCTTCCTTAGTGAGGGGTCACCTTTGTCCCTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795111 32 + 74645514 TCTTCCTTAGTGAGGGGTCACCTTTGTCCCTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057348 32 - 75148670 TCTTCCTTAGTGGGGGGTCACCTTTGTCCCTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945206 31 + 159171411 tcttccttagtcAGT-GTCACCTTTGTCCCTG i calJac3.chr5 I 160 C 0 s mm10.chr11 99628453 22 + 122082543 TTTTCCATAGTGG---GTCACCTGT------- i mm10.chr11 I 1 C 0 s canFam3.chr9 39489883 16 - 61074082 ---------------TCTCAGAATTGTCTTT- i canFam3.chr9 C 0 C 0 a score=439354.000000 s hg38.chr17_JH159146v1_alt 268364 152 + 278131 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGG-----ACTCTCTGACATTTTG-TTTTTAAATGTGACTCTCCCTCCTACCTGCAGATTGCTGTCTGCAAATCATGGGGGATGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATG s panTro4.chr17 66390222 152 - 82630442 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGG-----ACTCTCTGACATTTTG-TTTTTAAATGTGACTCTCCCTCCTACCTGCAGATTGCTGTCTGCAAATCATGGGGGATGAATTTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48332326 150 + 73212453 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACATG-----A--CTCTGACACTTTA-TTTCTAAATGTGATTCTACCTCCTACCTGTAGATTGCTCTCTGCAAATCATGGGGGACAATTTTTAT-AATGTGAATGTGTCTTTTGTTGTCAAATAATG i ponAbe2.chr17 C 0 I 496 s nomLeu3.chr19 48116862 152 - 81552678 GTCTATGCAGTGTCTTTTACAAAGC-------ACTGGTCACAGG-----ACTCTCTGACATTTTG-TTTTTAATTGTGACTCTCCCTCCTACCTGTAGATTGCTGTCTGCAAATCATGGGGGACAAAATTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATG i nomLeu3.chr19 I 353 C 0 s rheMac3.chr16 27689188 150 - 80904711 GTCTATGCAGTGTCTTTTACAAACC-------GCTGGACACATG-----AC--TCTGACACTTTA-TTTCTAAATGTGATTCTCCCTCCTACCTGTAGATAGCTCTCTACAAATCATGGGGGACACTTTTTAT-AATGTGAATGTATCTTTTGTTGTCAAAGAATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52790259 159 + 80997621 GTCTATGCTGTGTCTTTTACAAAGCACCTTTTACTGGTCACAGG-----ACTTTCTGACATTTTG-TTTTTAATTGTGACTCTCCCTCCTACCTGTCGATTGCTGTCTGCAAATCATGGGGGACGATTTTTAT-AATGTGAATGTATCTTGTGTTGTCCAAGAATG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795143 159 + 74645514 GTCTATGCTGTGTCTTTTACAAAGCATCTTTTACTGGTCACAGA-----ACTCtctgacattttg-tttttaattgtgacTCTCCCTCCTACCTGTCGATTGCTGTCTGCAAATCATGGGGGACGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCCAAGAATG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057380 159 - 75148670 GTCTATGCTGTGTCTTTTACAAAGCGTCTTTTACTTGTCACAGG-----ACTCTCTGACATTTTG-TTTTTAACTGTGACTTTCCCTCCTACCTGTCGATCGCTGTCTGCAAATCATGGGGGACGATTTTTAT-AATGTGAATGTATCTTTTGTTGTCCAAGAATG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945237 152 + 159171411 GCCTATGCAGTGTCTTTTACAAAGT-------GCTGGTCACACG-----AGTCTCTGACTTTTTT-AAAAAAAATGTGACTCTCCCTCCTACCTGTAGGTTGCTCTCTGCAAATCATGGGGTACAATTTTTAT-AATACAGATGTATCTTTTGTTGTCAAAGAATG i calJac3.chr5 C 0 C 0 s mm10.chr11 99628475 137 + 122082543 --------------TGCTACAAGTA-------ACTTGTCACAGG-----ACTCTCTGGCATTTTGTTTTTTAAACGTGGCATTCCCTTCCATCCGTACATTCCT---TGAAAATCATAGAAATGCTCTTCCACAAATTCCAGTATGCCTTTTGCTATCAAGGAGTG i mm10.chr11 C 0 C 0 s canFam3.chr9 39489899 135 - 61074082 -TCTAT----TTTCTTTATCAAAAGG------ACCCATCACATGGGTTCAATCATTGATGTTTTC-CTATGATCTGTA------TATCCTACCATGATGTTGTT-TGGACAAATTAT----------TCACAT-GATATCAAAGTCTCTTTTGATGTCAAAAGAG- i canFam3.chr9 C 0 C 0 a score=649890.000000 s hg38.chr17_JH159146v1_alt 268516 216 + 278131 TCCTGGTCAGGTGAAATGTTGGG-AAGGAATTAGAAGGAAGCACTCATTTGGG-GAAGGATGTCCCATCTGTAATGAGGATGACTCTGATCCCATGTGTGCATCTCGGATGGTC----GGGCAGATGGTCAGATCCCAA-GAAGTTCTAAACTC--TGTCAGATCTTATTCCACAGCCTCCAGCGAAAGTACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA s panTro4.chr17 66390374 216 - 82630442 TCCTGGTCAGGTGAAATGTTGGG-AAGGAATTAGAAGGAAGGACCCATTTGGG-GAAGGATGTCCCATCTGTAATGAGGATGACTCTGATCCCGTGTTTGCATCTTGGATGGTC----GGGCAGATAGTCAGATCCCAA-CAAGTTCTAAACTC--TGTCAGATCTTATTCCACAGCCTCCAGCGAAAGTACTTACCCATGTCTC-ACTGCCTTTAAAGGGTAAAA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24912243 217 - 73212453 TCCTGGTCAGGTGAAAGGTTGGGAAAGGAATGAGAAGGAAGGACTCATTTGGG-GAAGGACGTCCCATCTGCAATGAGGATGACTTTGATCCCGTGTGTGCATCTCGGATGGTG----GGGTGGATGGTCAGATCCCAA-CAAGTTCTAAACTC--AGTCAGATCTTATTCCACAGCCTCCAGCGAAAGTACTTACCCATGACTA-ACTGCCTTTAAAGGGTAAAA i ponAbe2.chr17 I 240 C 0 s nomLeu3.chr19 48117014 216 - 81552678 TCCTGGTCAGGTGAAATGTTGTG-AAGGAATTAGAAGGAAGCACTCATTTGGG-GAAGGATGTCCCATCTGTAATGAGGATGACTCTGATCCCGTGTGTGCATCTCAGATGGTC----GGGCAGATGGTCAGATCCCAA-CAAGTTCTAAACTC--TGTCAGATCTTATTCCACAGCCTCCAGCAAAAATACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27689338 220 - 80904711 TCCTGGTCAGATGAGATGTCGGA-AAGGAGTTAGAAGGAAGGACTCATTTGGGAGAAGGATGTCCCACCTGTAATGAAGATGACTCTGATTCCGTGTATGCTTCTTGAACGGTT----GAGAAGATGGTCAGATCCCAAGGAAGTTATAAACTCTGTGTCAGATCTTATTCCACCACTTCAAGTGAAAGTACTTAGCCATGACTC-ATTGCCTTTAAGGAGTAAAA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52790418 218 + 80997621 TCCTGGTCAGGTGAAATGTTGGA-AAGGGATTAGAAGGTAGGACTCATCTGGG-GAAGGAAGTCCCATCTGTAATGAAGATGACTCTGATCCCGTGTGTGCATCTTGGATGGTG----GGGTAGATGGTCAGATTCCAA-CAAGTTCTAAATTCTTTGTCAGATCTTATTCCACAGCCTCCAGCGAAAGTACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795302 218 + 74645514 TCCTGGTCAGGTGAAATGTTGGA-AAGGGATTAGAAGGTAGGACTCATCTGGG-GAAGGAAGTCCCATCTGTAATGAAGATGACTCTGATCCCGTGTGTGCATCTTGGATGGTG----GGGTAGATGGTCAGATTCCAA-CAAGTTCTAAATTCTTTGTCAGATCTTATTCCACAGCCTCCAGCGAAAGTACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057539 218 - 75148670 TCCTGGTCAGGTGAAATATTGGA-AAGGGATTAGAAGGTAGGACTCATCTGGG-GAAGGAAGTCCCATCTGTAATGAGGATGACTCTAATCCCGTGTGTGCATCTCGGAGGGTG----GGGTAGATGGTCAGATCCCAA-CAAGTTCTAAACTCTTTGTCAGATCTTATTCCACAGCCTCCAGTGAAAGTACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945389 220 + 159171411 TCTTGGTCAGGTGAAACATTGGA-AAGGAATTAGAAGGAAGGATTCATTTGGGAGAGGGATGTCCCATCTGTAATAAGGGTGATTCTGATTCCATATGTGCATCTTGGATGGCC----TGGGAAATGGTCAGATCCCAAGGAATTTCTGAACTCTGTGTCAGATCTTATTCCACAGCCTCCAGTGAAAGTACTTACCCATGACTC-ACTGCCTTTAAAGGGTAAAA i calJac3.chr5 C 0 C 0 s mm10.chr11 99628612 209 + 122082543 TTCCTCCCAGGTGAGA---TTAG-AAGGAGTTAGAAGGAAAGGC-CATTTAGA-AGGAGACTGTCCATCTTTCATGAGAATGATGGTGATTTTGTGTGTCCA--TTAGAGGATC----TGGGAAATGTGCAGACCTGAG-AACATTCTAAAT----TATCAGATCTCATTCCAGTCTCTTAAGTCGAAGAGCTTGGCAGTGGTGCAACTACCTAGAAATAATAGAA i mm10.chr11 C 0 C 0 s canFam3.chr9 39490034 200 - 61074082 --------AGGTATAATTATAGT-AGGGAAT---AGAGAAAAGTTCATTTT---TATGAGTTACCTGTGGGCTATGAGGAAGACA--GACCCTATGTGTGAGTCACAAATACTCATTAGGGAATACAATCTG--------GCTGTCTCAAAGTATGTGCTAAGTATCACTTCCTGTGTTCAGTTTGGAACCGTTACCAATGACTC-ATTGTTTGTAAatattgaaa i canFam3.chr9 C 0 T 1706 a score=161508.000000 s hg38.chr17_JH159146v1_alt 268732 51 + 278131 ACACA-TTTTGCTGTATGTCTTACAGTATATGCATTATGAGTAGGAAGTTTT s panTro4.chr17 66390590 51 - 82630442 ACACA-TTTTGCTGTATGTCTTACAGTATATGCATTATGAGTAGGAAGTTTT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24912460 51 - 73212453 ACACA-TTTTGCTGTATGTCTTACAGTATATGCATTATGAGTAGGAAGTTTT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48117230 51 - 81552678 ACACA-TTTTGCTGTATGTCTTACAGTATATGCATTATGAGTAGGAAGtttt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27689558 51 - 80904711 ACACA-TTTTTGTATATGTCTTACAGTATAGGCATTAGGAGTAGGAAGTTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52790636 51 + 80997621 ACACA-TTTTGCTGTATGTCTTACAGTATAGGCATTAAGAGTAGGAAGTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795520 51 + 74645514 ACACA-TTTTGCTGTATGTCTTACAGTATAGGCATTAAGAGTAGGAagtttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057757 51 - 75148670 ACACA-TTTTGCTGTATGTCTTACAGTGTAGGTATTAAGTGTAGGAAGTTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945609 51 + 159171411 ACATA-TTTCGCTGTATGTCCTATAGTATAGGCATTAAGCATAGGGAGTTTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99628821 52 + 122082543 ACTCAGTTTTTTTGTATGTCTTTCTGAAGAACGATTAAGAGTGGGGAAATTT i mm10.chr11 C 0 C 0 e canFam3.chr9 39490234 1706 - 61074082 T a score=25156.000000 s hg38.chr17_JH159146v1_alt 268783 12 + 278131 GAtttatctttt s panTro4.chr17 66390641 9 - 82630442 GAtttatc---t i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24912511 12 - 73212453 GAtttatctttt i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48117281 10 - 81552678 gatttact--tt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53225766 12 + 80904711 TATTTACCtttt i rheMac3.chr16 T 4977 C 0 s macFas5.chr16 52790687 12 + 80997621 TATTTACCTTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795571 12 + 74645514 tatttacctttt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057808 12 - 75148670 GATTTACCtttt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945660 12 + 159171411 GAtttatttatt i calJac3.chr5 C 0 C 0 s mm10.chr11 99628873 12 + 122082543 TATTCATCTTTT i mm10.chr11 C 0 I 1007 e canFam3.chr9 39490234 1706 - 61074082 T a score=284156.000000 s hg38.chr17_JH159146v1_alt 268795 122 + 278131 ttttttt----------------------------tttttgacagattctcaatctgtcgc-caggctggagtacagtggcatgatctctgctcactgcaacctccacctcctgggttcaaacgattcttttgcctcagcctcccgagtaa s panTro4.chr17 66390650 122 - 82630442 ttttttt----------------------------tttttgacagattctcaatctgtcgc-caggctggagtacagtggcatgatctctgctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagcctcccgagtag i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24912523 122 - 73212453 ttttttt----------------------------tttttgacagattctcgatctgtcgc-caggctggagtacagtggcatgatctctgctcactgcaacctccacctcctgggttcaagagattcttctgcctcagcctcccgagtag i ponAbe2.chr17 C 0 I 8 s nomLeu3.chr19 48117291 122 - 81552678 ttttttt----------------------------tttttgacagattctcaatctgtagc-caggctggagtacagtggcatgatctcggctcactgcaacctccacctcctgggttcaagcaattcttctgcctcagcctcccgagtag i nomLeu3.chr19 C 0 I 8 s rheMac3.chr16 53225778 139 + 80904711 ctttttgtttttttttttgtttttttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagccttcctagtaa i rheMac3.chr16 C 0 I 11 s macFas5.chr16 52790699 136 + 80997621 CTTTTTG---ttttttttgtttgtttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagccttcctagtaa i macFas5.chr16 C 0 I 12 s papAnu2.chr16 47795583 131 + 74645514 ctttttg--------tttgtttgtttgtttgtttgtttttgacagagtctcact------------ctggagtatagtggcatgattttggctcactgcaacctccgcctcctgggttcaagtgattcttctgcctcagccttcctagtaa i papAnu2.chr16 C 0 I 12 s chlSab2.chr16 10057820 111 - 75148670 ttttttg----------------------------tttttgacagagtctcact------------ctggagtatagtggcatgatttcggctcactgcagcctccacctcctgggttcaagtgattcttctgcctcagccttccgagtag i chlSab2.chr16 C 0 I 8 s calJac3.chr5 112945672 123 + 159171411 tatttac----------------------------tttgagatggagtctcgctctgtcacacaggctggagtgcagtggcacaatctctgctcaatgcagtctctgcctcctgggttcaagcaattctcctgcctcagtctcctgagtag i calJac3.chr5 C 0 C 0 e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99628885 1007 + 122082543 I a score=-8488.000000 s hg38.chr17_JH159146v1_alt 268917 3 + 278131 --ggt s panTro4.chr17 66390772 3 - 82630442 --gga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24912653 3 - 73212453 --aca i ponAbe2.chr17 I 8 C 0 s nomLeu3.chr19 48117421 3 - 81552678 --aca i nomLeu3.chr19 I 8 C 0 s macFas5.chr16 52790847 2 + 80997621 --gt- i macFas5.chr16 I 12 C 0 s papAnu2.chr16 47795726 2 + 74645514 --gt- i papAnu2.chr16 I 12 C 0 s chlSab2.chr16 10057939 2 - 75148670 --gc- i chlSab2.chr16 I 8 I 1 s calJac3.chr5 112945795 3 + 159171411 ctg-- i calJac3.chr5 C 0 C 0 e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99628885 1007 + 122082543 I e rheMac3.chr16 53225917 11 + 80904711 I a score=447498.000000 s hg38.chr17_JH159146v1_alt 268920 163 + 278131 --------ggtttgcgccatcacacccagcttacttttgtatttttagtagagacagggtttcatcatgttggccaagatggtctcgatctcttgaccccgtgatccacctgccttggcttcccaaagtgttgggattgcaggcatgagcccccaacacccagccTGATTA s panTro4.chr17 66390775 162 - 82630442 --------ggtttgcgccaccacacccagcttacttttgtatttttagtagagacagggtttcaccatgttggccaagacggtctcgatctcttgaccccgtgatccacctgccttggcttcccaaagtgttgggattgcaggcatgagccact-gcacccagccTGATTA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24912656 162 - 73212453 --------gatttgcaccaccacacccagcttacttttgtatttttagtagagacagggtttcaccatgttggccaagatggtctcaatctcttgaccccgtgatccacctgccttggcttcccaaagtgttgggattgcaggcatgagccact-gcacccagccTGATTA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48117424 162 - 81552678 --------ggtgtgcaccaccacacccagcttacttttgtatttttagtagagacagggtttcaccacattggccaagttggtctcgatttcttgatcccgtgattcacccaccttggcttcccaaagtgttgggattgcaggcatgagccact-gcacccagccTGGTTA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53225928 162 + 80904711 --------ggtgtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcccgccttggcctcccaaagtgttgggattacaggcgtgagccacc-gtgcccagccTGATTA i rheMac3.chr16 I 11 I 1579 s macFas5.chr16 52790849 159 + 80997621 -----------gtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcccgccttggcctcccaaagtgttgggattgcaggcgtgagccacc-gtgcccagccTGATTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795728 159 + 74645514 -----------gtgcgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgttggccaagatggtctggatcttttgaccttgtgatccgcctgccttggcctcccaaagtgttgggattgcaggcatgagccacc-gtgcccagcctgatta i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10057942 162 - 75148670 --------ggtatgtgccaccacacccagctgacttttgtactcttagtagagacaggatttcaccatgctggccaagatggtctggatcttttgacctcatgatccacccgccttgacttcccaaagtgttgggattgcaggcgtgagccacc-gtgcccagccTGATTA i chlSab2.chr16 I 1 C 0 s calJac3.chr5 112945798 170 + 159171411 ggactacaggcacatgccaccacgcccagctagtttttgtatttttagtagagatggggtttcaccatgttggccaggacagtctcgatctcttgacttcatgatctttcctcctcagcctcccaaagtgctgggattacaggcatgagccact-gcacctggccTGATTT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99628885 1007 + 122082543 I a score=240214.000000 s hg38.chr17_JH159146v1_alt 269083 80 + 278131 ATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATTTGTTATATATAAAGAATATTTAGAATTATT s panTro4.chr17 66390937 80 - 82630442 ATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATTTGTTATATATAAAGAATATTTAGAATTATT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24912818 80 - 73212453 ATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATTTGTTATATATGAAGAATATTTAGAATTATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48117586 80 - 81552678 ATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTACAAAAGCATATGTTATATACGAAGAATATTTAGAATTATT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27689609 80 - 80904711 ATCTTTGATCATCAAAATTGCATGATGAATTTCTATTTGACAAAAGCATTTGTTATATGTAGACAATGTTTATAATTATT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52791008 80 + 80997621 ATCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACAAAAGCATTTGTTATATATAAAGAATATTTAGAATTATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795887 80 + 74645514 aTCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACAAAAGCATTtgttatatataaagaatatttagAATTATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10058104 80 - 75148670 ATCTTTGATCATCAAAATTGCATGATGGGTTTTTCATTTACACAAGCATTTGTTATATATAAAGAATATTTAGAATTATT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112945968 80 + 159171411 ATCTTTGATCATCAAAATTGCATGATGGATTTTTCATTTGCAAAAGTATTTGTTGTATATAAACAATATTCAGAATTATT i calJac3.chr5 C 0 C 0 e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99628885 1007 + 122082543 I a score=382547.000000 s hg38.chr17_JH159146v1_alt 269163 138 + 278131 AAGCCTTCAATAACATGCATCCAAGATGTTCTATTGGGTACTCTGGGTGTAGAACAGATAAACCCTCAACTTTTTCTTGCAGGTACTTGCATAAGACAC-ATGGATAGGAAAC--AGTTTGGCAGAAATGAAAAGAATTAC--------- s panTro4.chr17 66391017 138 - 82630442 AAGCCTTCAATAACATGCATCCAAGATGTTCCATTAGGTACTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAGGTACTTGCATAAGACAC-ATGGATAGGAAAC--AGTTTGGCAGAAATGAAAAGAATTAC--------- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24912898 141 - 73212453 AAGCCTTCAATAACATGCATCCAAGACATTCTATTGGGTACTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAGATACTGTCATAAGACCCTTTGGATAGCAAACAGAGTTTGGCAGAAATGAAAAGAATTAC--------- i ponAbe2.chr17 C 0 T 18831 s nomLeu3.chr19 48117666 140 - 81552678 AAGCCTTCAATAACATGCATCCAAGACGTTCTATTGGGTATTCTGGGTGTAGAACAGATAAACCCTCATCTTTTTCTTGCAAGTACTGTCATAAGACAC-ATGGATAGCAAACAGAGTTCAGCAGAAATGAAAAGAATTAC--------- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27689689 140 - 80904711 AAGCCTTCAATAATGTGCATCCAAGACATTCTGTTGGGTACTCTGGGTATAGAACGGATAAACCCTCATCTTTTTCCTGCGGGTACTTGTATAAGACAC-ATGTATAAGAAACAGAATTTGGCAAAAATGAAAGGAATCAC--------- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52791088 140 + 80997621 AAGGCTTCAATAACATGCATCCAAGATGTTCTACTGGGTACTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACAC-TTAGATAGGAAACAGAGTTCAGCAGAAATGAGAAGAATTAC--------- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47795967 140 + 74645514 AAGGCTTCAATAACATGCATCCAAGATGTTCTACTGGGTACTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACAC-TTAGATAGGAAACAGAGTTcagcagaaatgaaaagaattac--------- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10058184 123 - 75148670 AAGCCTTCAATAACATGCATCCAAGATGTTCTACTGGGTATTCTGGGTGTAGAACAGACAAACCCTCACCTTTTTCTTGCAGGTACTTGCATAAGACAC-TTGGAT-----------------AGAAATGAAAAGAATTAC--------- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112946048 138 + 159171411 AGGTCTTCAATAACATGCATCGAAGATGTTTTACTGGGTACTCCGGGTGTAGAACAGATAAATCCTCATCTATTTCTTGCAGGTACTTGAATAAGACAC-ATGCATAGGAAAC--AGTTTGACaaaaataaaaataattac--------- i calJac3.chr5 C 0 C 0 s mm10.chr11 99629892 144 + 122082543 aagaCTTTGGCAATATATATGAAAGAGTTTTTGCTGACTGTTCTTAGCACAGAACAAGT-AGCCCTTACTCCTTTC-TGTGAGTGGTTGGATAGGACAC-AGGCAGAGGGAAG--CATTTGGCACAAG-ATTAAGACTTAATCTTAATGC i mm10.chr11 I 1007 C 0 e canFam3.chr9 39490234 1706 - 61074082 T a score=459389.000000 s hg38.chr17_JH159146v1_alt 269301 166 + 278131 AATTATTTTCATTAAACAACTAAAATAAAAAATGTATAATATGTGGATAAGTTCCATACACCCTCATGGTATGTATATTacttgtgaagtattgactatgtagcaggcattgt--------------------------------------------accaaatatc------ttacatttgtttcattttcacgctttaatagaaccttatgaac s panTro4.chr17 66391155 162 - 82630442 AATTATTTTCATTAAACAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCACGGTATGTATATTACTTGTGAAGTATTGAC----TAGcaggcattgt--------------------------------------------accaaatatc------ttacatttgtttcattttcacactttaatacaaccttatgaac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48332972 158 + 73212453 AATTATGTTCATTAAACAACTAAAAT-AAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTacttgtgaagtattgactatgtaccagacattgt--------------------------------------------gctaaatatc------tt-------tttcattttcactctttattacaaccttataaag i ponAbe2.chr17 I 496 C 0 s nomLeu3.chr19 48117806 166 - 81552678 AATTATTTTCATTAAACAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATGTTacttgtgaagtattgactatgtagcgggcattgt--------------------------------------------accaaatatc------ttatatttgtttcattttcgcactttaatataaccttatgaac i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27689829 165 - 80904711 AATTATGTTCATTAAACAACTACAAT-AAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAAGGTATGTAtattacttgtgaagttttgactacgtaccagacattgt--------------------------------------------gctaaacatc------ttatatttatttcattttcactctttaatacaaccttataaag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52791228 166 + 80997621 AATTATTTTCATTAAATAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTACGTAGGAGGCATTGT--------------------------------------------ATCAAATATC------TTATATCTGTTTCATTTTCACGCTTGAATACGACCTTATGAAC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796107 166 + 74645514 aattattttcattaaataactaaaataaaaaatgtatagtaTGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTACGTAGGAGGCATTGT--------------------------------------------ATCAAATATc------ttatatttgtttcattttcatgctTGAATACGACCTTATGAAC i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10058307 166 - 75148670 AACTATTTTCATTAAATAACTAAAATAAAAAATGTATAGTATGTGGATAAGTTCCATACACCCTCAGGGTATGTATATTACTTGTGAAGTATTGATTATGTAGGAGGCATTGT--------------------------------------------ATCAAATATC------TTATATTTGTTTCATTTTCACACTTTAATATGACCTTATGAAC i chlSab2.chr16 C 0 I 583 s calJac3.chr5 112946186 158 + 159171411 aattatttttattaaaCCACTAAAAT-GAAATTGTATAGTATGTGGATAAGTTCCATACACCTTCAGTGTATGTATATTacttgtgaagtattgacta--taccaggcattgt--------------------------------------------gccaaatatt------tt-----tgtttcattttcaatctttaatacaaccttatgaag i calJac3.chr5 C 0 C 0 s mm10.chr11 99630036 201 + 122082543 AATGACTTAAATGAAGCAACTAAAAT-CAAAATATGCAGTATATGAATGTGTCCCATGTACTCTTGGTGGGAGTGTAGT--TTGTAAAATGTC-CCTACATATTAGACACTGTGTGGGTTGTGTCTAGGGGGAATAAATTGTAAAGTGTCACCATGAATCAAACATTGTGTGATTATATTTTTTCTGTTTTTA---------ACAGTTCTATGA-- i mm10.chr11 C 0 C 0 e canFam3.chr9 39490234 1706 - 61074082 T a score=143935.000000 s hg38.chr17_JH159146v1_alt 269467 49 + 278131 tagtttatattcttattagtcttttaggggaatactcaaaagaagcatt s panTro4.chr17 66391317 49 - 82630442 tagtttatattcttattagtcttttaggggaatactcaaaagaagcatt i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48333130 49 + 73212453 tagtgtacatacttattactcttttagcagaATACTCAAAAGAAGCATT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48117972 49 - 81552678 tagtttatattcttattagtcttttaagggaatactcaaaagaagcatt i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27689994 49 - 80904711 tagtgtacattcttattactcttttagcagagtacgcaaaagaagcatt i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52791394 49 + 80997621 TAGTTTATATTCTTATTAGTCTTTTAGGGGGATAGTCAAAAGAAGCATT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796273 49 + 74645514 TAGTTTATATTCTTATTAGTCTTTTAGGGGAATAGTCAAAAGAAGCATT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10059056 49 - 75148670 tagTTTATATTCTTATTAGTCTTTTAGGGGAATAGTCAAAAAAAGAATT i chlSab2.chr16 I 583 C 0 s calJac3.chr5 112946344 49 + 159171411 tagtgtatattcttattactcttttattggaatactcaaaagaagcatt i calJac3.chr5 C 0 I 5953 s mm10.chr11 99630237 44 + 122082543 -AGTCTA----CTCATTCTTCTTTTGATAGAGGAGCTTAAAGAAGCACA i mm10.chr11 C 0 C 0 e canFam3.chr9 39490234 1706 - 61074082 T a score=1241810.000000 s hg38.chr17_JH159146v1_alt 269516 452 + 278131 aaaaactta--------aaacaaacaaacaaac----aacttgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCCGTAAAGAATACAATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtt--tca-tctttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgctaagctaccccattcatgtatcatgatttcctgccttgtgctcataattt-atacattctcctgtatcatagtcatttacttctgtctttccaccacgtgcaatgcaaataccctgaaggcttgcgctatggcatttattctcgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaatgaaGGTTTTTTTGATGACATAGAGGCATG s panTro4.chr17 66391366 451 - 82630442 aaaaagtta--------aaacaaacaaacaaac----aacttgtccaaggttaaagagaaagtaagCCTAATACGTCTTAGTGTAGCCAAGAAAGCCGTAAAGAATACAATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtt--tca-tctttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgctaagctaccccattcacgtatcatgatttcctgccttgtgctcataattt-atacattctcctgtatcatagtcatttacttctgtcattccaccacgtgcaatgcaaataccctgaaggcatgcgctatggcatttattcttgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaaggaaGG-CTTTTTGATGACATAGAGGCATG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48333179 450 + 73212453 AAAAAGCTA--------AAACGAACAAACAAA-----ATCTTGTCCAATATTAAAGAGAAAGTAAGCCTAATATGTCTTAGTGTAGCCAAGAAAGCGATAAAGAATACAATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtt--tca-tctttttttatccactctgcaaactcctactcaattgtcaaaacccagtt-aaatatttcctcctcaataatatctttcctgataagttaccccattcatttatcattatttcctgccttgtgctcataatttgatacatactactgtatcacagtcacttacgtctgtcattccaccatgtgcaatgcaaataccccgaaggcatgggctatggcatttattcttgttaccgtgatactcagcacagagaacaccagtaataaatgtttgttgagtgaatgaaGG-CTCTTTGATGACATAGAAGCATG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48118021 456 - 81552678 aaaaagtta--------aaacaaacaaacaaacaaaaaacttgtccaaggttaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCGGTAAAGAATAACATTTGCTAAGCttgctaaaactgcttcatcttcttggaatgtt--tca-tc-ttttttgtccactctgcaaactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcctgataagctaccccattcatgtatcatgatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttacttctgtcgttccaccacgtgcaatgcaaataccctgaaggcataggctatggcatttattcttgttaccatgatactcagcacagagaacactggtggtaaatgtttgttgagtgaatgaaGGCTTTTTTGATGACATAGGGGCATG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27690043 457 - 80904711 aaaaagctaaaacaaacaaacaaacaaacaaaa----aacgtgtcgaagattaaagagaaagtaagCCTAATATGTCTTAGGGTAGCCAAGAAAGAGGTAAAGAATAAAATTTGCCAAACTTGCTGAAActgtttcatcttcttggaatgtt--tcattt-ttttttgttcattctgcaaactcctactcatgtgtcaaaa-ccagttaaaatatttcctcctcaataat-tttttcctgataagctacaccatacatttatcattatttcctcccttgtgctcataatttgatacattctactgtatcatagtcatttacttctgtcattcc-ccatatgcaatgcaaataccctgaaggcatggcctatgacatttctttttgttaccatgatactcagcacagagaacactggtggtaaatgtttattgagtgaatgaaGG-CTTTTTGATGACATAGAGGCATG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52791443 445 + 80997621 AAAAAGTTA--------AAGCAAACAAACAGAA----AACTTGTCCAAGATTAAAGAGA----AAGCCTAGTATGTCTTAGTGTAGCCAAGACAGCGGTAAAGAATAAAATTTGCTAAGCttgcagaaactgttttatct--ttggaacgtt--tca-tc-ttttttatccactctgcacactcctactcacgtgtcaagacccagttaaaatatttcctcctcaataatatctttcttgataagctaacccattcatgtatcactatttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttactcctgtcattccaccatgtgcaatgcaaataccctgaagccatgggctatggcatttattcttattactatgatactcagcacagagaacactggtggtaaatatttgttgagtgaatgaaGG-CTTTTTGATGACATAGAGTCATA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796322 445 + 74645514 AAAAAgtta--------aagcaaacaaacagaa----aacttgtCCAAGATTAAAGAGA----AAGCCTAGTATGTCTTAGTGTAGCCAAGACAGCggtaaagaataaaatttgcTAAGCTTGCAGAAACTGTTTTATCT--TTGGAACGTT--TCA-TC-TTTTTTATCCACTCTGCACACTCCTACTCATGTGTCAAGACTCAGTTAAAATATTTCCTCCTCAATAATATCTTTCTTGATAAGCTAACCCATTCATGTATCACTATTTCCTGCCTTGTGCTCATAATTTGATACATTCTACTGTATCATAGTCATTTACTCCTGTCATTCCACCACGTGCAATGCAAATACCCTGAAGCCATGGGCTATGGCATTTATTCTTATTACTATGATACTCAGCACAGAGAACACTggtggtaaatatttgttgagtgaatgaagg-cTTTTTGATGACATAGAGTCATA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10059105 445 - 75148670 AAAAAGTTA--------AAGCAAACAAACAGAA----AACTTGTCCAAGATTAAAAAGA----AAGCCTAATATGTCTTAGTGTAGCCAAGACAGCAGTAAAGAATAAAATTTGCTAAGCTTGCTGGAActgttttatct--ttggaatgtt--tca-tc-ttttttatccactctgcacactcctactcatgtgtcaagacccagttaaaatatttcctcctcaataatatctttcttgataagctaacccattcatgtatcattctttcctgccttgtgctcataatttgatacattctactgtatcatagtcatttactcctgtcattccaccatgtgcaatgcaaataccctgaaggcatgggctatggcatttatttttgttaccatgatactcagcacagagaacactggtggtaaatatttgtagagtgaatgaaGG-CTTTTTGATGACATAAAGTCATA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112952346 450 + 159171411 AAAAAGTTA--------AAACAAACAAACAAA-----AACTTGTCCAAGATTAAAGTGAAAGCAAGTCTAATACGTCTTAGTGTAGCCAAGAAAGCAATAAAGAATAAAATTTGCTAAACTTTCTGAAActgttttatcttcttggaatgtt--ttg-tc-ttttttgtccactctgaaaactcctatttacgtgtcaagacccagttaacatacttcctcctcaacaatatttttcctcataagctaccccatttatgtatcattatttcctgccttgcactcataatttgatacattctactctattataatcatttacttctgtcattcctccatgggcaatgcaaataccctgaaggcgtgggctgtggcatttattcttgttaccatgagactcagcacagagggcactggtggtaaatgtttgttgagtgaatggaGG-CTTTTTGATGACATAGAGGCATG i calJac3.chr5 I 5953 C 0 s mm10.chr11 99630281 260 + 122082543 GAGAGGCTA--------AAAT-------CAAAA----CATCTGCCCAAGAGGAAACACAACGTGAGCTGAACCTGCCTCTGAGTAGCAGAAGGAG-AATGAAGAATTAAGCTTGGAGCCTTTGCTGGAGGTGTTTTATCTTCTTGGAATGCTGCTCA-GC---------------------------------CATCAAGGCTCAACAGAGATGTTCTTTCCTGCGTGGTGTCTGTCCTGCTAAA-TGGCCCTCTCACATGTCATGA---CCCTCCTTGT-------------------------------------------------------CAAGTG-----------------------------------------------------------------------------------GTTTGTGGAATGGATGGAGG------------CATAGGAGCAGG i mm10.chr11 C 0 I 105 e canFam3.chr9 39490234 1706 - 61074082 T a score=335391.000000 s hg38.chr17_JH159146v1_alt 269968 122 + 278131 TAAGGTCCTTTAAAAAATGTATATATCTTTTGACTTCTGGATAAAAGGGAGGAAAACATCCCAAACAAAGAAATCATAATTTCATTTCAGGAAGACTAAACTCATTTGTGTGATAGGTAACA s panTro4.chr17 66391817 122 - 82630442 TAAGGTCCTTTAAAAAATGTATATATCTTTTGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAAATCATAATTTCATTTCAGGAAGACTAAACTCATTTGTGTGATAGGTAACA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48333629 121 + 73212453 TAAGGTCCTTT-AAAAATGTATATATCTTTTGACTTCCGGATAAAAGAGAGGAAAACATTCCAAACAAGGAGATCAGAGTTTCATTTCAGGAAAACTACACTTATTTATGTGGTAGGTAACA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chr19 48118477 122 - 81552678 TAAGGTCCTTTAAAAAATGTATATATCTTTTGACTTCTGGATAAAATAGAGGAAAACATTCCAAACAAAAAGATCATAATTACATTTCAGGAAGCCTAAACTCATTTATGTGGTAGGTAACA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27690500 116 - 80904711 TAAGGTCCTTT-AGAAATGGATATATCTTTTGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAGGAGATCAGAGTTTAATTTTAGGAAAACTA-----ATTTCTATGGTAAGTAACA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52791888 121 + 80997621 TAAGGTCCTTT-AAAAATGTACATATCTTTTGACTTCTGGATAAAAGAGAGGAAAGCATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTAGGTAACA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796767 121 + 74645514 TAAggtccttt-aaaaatgtacatatcttTTGACTTCTGGATAAAAGAGAGGAAAGCATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTAGGTAACA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10059550 120 - 75148670 TACGGTCCTTT-AAAAATGTACATATCTTTTGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAGACTAAACTCATTTATGTGGTA-GTAACA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112952796 120 + 159171411 TAA-ATCCTTT-AAAATTGTATATATCTTTTGACTTCTGGATAAGAGAGGGAAAAACATTCCAAACAAAGAGATCATAGTTTCATTTCAGGAAAACTACACTTATTTATGTGGTAGGTAATA i calJac3.chr5 C 0 C 0 e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99630541 105 + 122082543 I a score=238992.000000 s hg38.chr17_JH159146v1_alt 270090 88 + 278131 TGTCACCTGATAAATAACATACGTGGAA---A-CTGCGGAAGTCAAGATTCAATTTATAGAATGAGACTTGTTTATAGATAACCAAGAATAC---- s panTro4.chr17 66391939 88 - 82630442 TGTCACCTGATAAATAACATACGTGGAA---A-CTGCGGAAGTTAAGATTCAATTTATAGAATGAGACTTGTTTATAGATAACCAAGAATAC---- i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 48333750 89 + 73212453 TGTCCCCTGATAAATAACATATGTGGAA---AGTTGTGGAAGTTAGGATTCCGTTTATAGAATGAGACTTGGTTATAGATAACCAGGAATAC---- i ponAbe2.chr17 C 0 n 0 s nomLeu3.chr19 48118599 91 - 81552678 TGTCACCTGATAAATAACATATTTGTTATTTA-TTGTGGAAATTAAGATTCAATTTATAGAATGAGACCTGTTTATAGATAACCAGGAATAC---- i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27690616 89 - 80904711 TGTCCCCTGATAAACAGTATATGCGGAA---AGTTGTGGAAGTTGGGATTCCATTCATAGAATAAGACTTAGTTATAGATAACCAGGAAtac---- i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52792009 89 + 80997621 TGTCACCTGATAAACAACCTATGTGGAA---AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAGGACTAC---- i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796888 89 + 74645514 TGTCACCTGATAAACAACCTATGTGGAA---AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAGGACTAC---- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10059670 89 - 75148670 TGTCACCTGATAAACAACCTATGTGGAA---AGTTGTGGAAGTTAACAGTCAATTTGTAGAATGAGACTTGTTTATAGATAACCAGGACTAC---- i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112952916 87 + 159171411 TGTCACCTGATAAATAAC--ATGTGGAA---AGTTGTGGAGGTTAAGATTCAATTTATAGAATGAGACTTGCTTATAAATAACCAGGAATGC---- i calJac3.chr5 C 0 C 0 s mm10.chr11 99630646 88 + 122082543 TGTCACCACATAAAGGCTATGTGCAGGA---AGCTGCAGAAA-----ACTTGATTTGCAGGGGAAGACTCGTTTACAGATGTCCATCAACAAACAC i mm10.chr11 I 105 C 0 e canFam3.chr9 39490234 1706 - 61074082 T a score=12540.000000 s hg38.chr17_JH159146v1_alt 270178 5 + 278131 AGTGT s panTro4.chr17 66392027 5 - 82630442 AGTGT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48118690 5 - 81552678 AGTGT i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 27690705 5 - 80904711 tgtgt i rheMac3.chr16 C 0 n 0 s macFas5.chr16 52792098 5 + 80997621 AGTGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796977 5 + 74645514 AGTGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10059759 5 - 75148670 AGTGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953003 5 + 159171411 AGTGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99630734 5 + 122082543 ACTGC i mm10.chr11 C 0 C 0 e ponAbe2.chr17 48333839 0 + 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T a score=642007.000000 s hg38.chr17_JH159146v1_alt 270183 346 + 278131 TGAACGTGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAGATGGTAGCACTGGTTCTCCTTCAC--CTCCTGACTTCCTCGTTTTACTCTTGTTGATTGAAATAACTATTATTTCCTGTTTCGTATCAGTCAGCCAAAAATGTTTGCTGATAATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagacctgagtgcacataatttatttgggggatgatcccaggaagcacaagtgaggaaacggtgaaagtaagacaggaaaggtagaaaatcccaacagtgtttgtgttaatggtaaggcccccactgtgggcag s panTro4.chr17 66392032 346 - 82630442 AGAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAGATGGTAGCACTGGTTCTCCTTCAC--CTCCTGACTTCCTCGTTTTACTCTTGTTGATTGAAATAACTATTATTTCCAGTTTGGTATCAGTCAGCCAAAAATGTTTGCTGATAATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagacctgagtgcacataatttatttgggggatgatcccaggaagcacaagtgaggaaacggtgaaagtaagacaggaaaggtagaaaatcccagcagtgtttgtgttaatggtaaggcccccactgtgggcag i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48118695 346 - 81552678 TTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAAGTAAACGCCAAATGGTAGTACTGGTTCTCCTTCAC--CTCCTGACTTCCTCGTTTTACTCTTGTTGATTGAAATAACCATTATTTCCAGTTTGATATCAGTCAGCCAAAAATGTTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagaccggggtgcacataatttatttgggggatgatcccaggaagcacaagtgaggaaatggtgaaagtaagacaggaaaggtagaaaatcccaagagtgtttgtgttaatggtagggcccccactgtgggcag i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52792103 346 + 80997621 TTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGTGGTAAACACCAAATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCGTTTTACTCTTATTAATTGAAATAACTATTATTTCCAGTTTGATATCAGCCAGCCAAAAATATTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgccaaccttgagaaaaagacttgagtgcacataatttatctgggggatgatcccaggaagcacaagtgaggaaatggtgaaagtaagacaggaaagatagaaaatcccaagaatgtttgtgttaatggtagggcccccactgtgggcag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47796982 346 + 74645514 TTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAGGTAAACACCACATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCGTTTTACTCTTATTAATTGAAATAACTATTATTTCCAGTTTGATATCAGCCAgccaaaaatatttgctgatcaTCTGTTGTCTTAGCTTAAATTCTACCCAATGCCAACCTTGAGAAAAAGACTTGAGTGCACATAATTTATCTGGGGGAtgatcccaggaagcacaagTGAGGAAATGATGAAAGTAAGACAGGAAAGGTAGAAAATCCCAAGAATGTTTGTGTTAATGGTAGGGCCCCCACTGTGGGCAG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10059764 346 - 75148670 TTAACATGCATGCCTATATTCACACAGT-AAAAAGACAGGAA-GGAGGTAAACCTCAAATGGTAGGACTGATTCTCCTTTAC--CTCCTGACTTCCTCATTTTACTCTTATTGATTGAAATAACTATTATTTCCAGTTTGATATCAGTCAGCCAAAAATATTTGCTGATCATCTGTtgtcttagcttaaattctacccaatgcaaaccttgagaaaaagacttgggtgcacataatttatctgggggatgatcccaggaagcacaagtaaggaaatggtgacagtaagacaggaaagatagaaaatcccaagaatgtttgtgttaatggtagggcccccactgtgggcag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953008 346 + 159171411 TTAACAT-CATGCCTATATTCACACAGGAAAAAAGACAGGAA-GCAGGTAAACACCAAATGATAACACTGGTTCTCCTTCAC--TTCCTGACTTCCCAGTTTTACTTTTATTGATTGGTTTAATTATCATTGCCCATTTAATGCCAGTCAGCCAAAAATGTTTGCTGAACATCTATtgtctttgcttgaattctacccaaagcaaaccttgagaaaaagacttgagtgcacataatttaattgggtgatgaatccaggaagcacaagcgagaaaatggggaaagtaatacatgaaatttggaaaatcccaagaatgtttgtgctaatggtagggtccccactgtgggcag i calJac3.chr5 C 0 C 0 s mm10.chr11 99630739 300 + 122082543 TCAACTCACTTGTCTACAGCCATAGGGC---AAGGGTAGGAAGGGAGGCACTAACCAAATCATAACACCTATTTTTTTTTATTGCCCCAGACTTCCCAGTTTTACTCTTACTGCTAGGAA-AACTAT-----------------CAATTAGGCGAAAATATTT-CTGAACGTCCCCTGACTTTGCTTGAATTGTATACACTCTAGAACCTTGAACAAAGACT--------------------------CCATCCCAGAAAGTTCGAGAGAGGAAATGGGGAAAATGGTCCAAAGAGGAAGGAAAAACCCAA-AGCATTTGTATTAATGATGAGAT-TATACTGTGGGCAG i mm10.chr11 C 0 C 0 e ponAbe2.chr17 48333839 0 + 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e rheMac3.chr16 27690710 0 - 80904711 I a score=228146.000000 s hg38.chr17_JH159146v1_alt 270529 138 + 278131 ctggggACGAACCCCAGGGACAAGCCTGAGGCTGGAGGCACTTGGCCACCATGATTGCACACCTGTAAAATCCTGTAGAGTCAGCTGGGTATTAGTGTGAATCGCGAGATCAGATAAAATATGAACTTATACTAATCC s panTro4.chr17 66392378 138 - 82630442 ctggggACGAACCCCAGGGACAAGCCTGAGGCTGGAGGTACTTGGCCACCATGATTGCACACCTGTAAAATCCTGTAGAGTCAGCTGGGTATTAGTGTGAATCGTGAGATCAGATAAAATATGAACTTATACTAATCT i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48119041 138 - 81552678 ctggggACGAACACTGGGGAAAAGCCTGAGACTGGAGGCACTTGGCCACCATGATTGCACACCTGTAAAATCCTGGAGAGTCAGCTGGGTATTAGTATGAATCATGAGATCAGATAAAATATGAACTTATACTAATCT i nomLeu3.chr19 C 0 C 0 s macFas5.chr16 52792449 138 + 80997621 ctggggACGAACACCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAAGACAAACTTATACTAACTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47797328 138 + 74645514 CTGGGGACGAACCCCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAATACAAACTTATACTAACTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10060110 138 - 75148670 ctcgggATGAACCCCGGGGAAAGGCCTGAAGCTGGAGGCACTTGGCCACCATGATTGCACACCTACAAAATCCTGGAGAGTCAGCTGGGTATTAGTATTAATCATGAGATCAGATAAAATATGAACTTATACTAACCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953354 128 + 159171411 ctggggACAAACCCTGGGGACGGGCCTGAGGCTGGAGGCACTTGGCCACCAAGATTGCACA----------CTTGGAGAGTCAGCTGGGTATTAGTATTAACCATGAGACCAGATAAAACATGAATTTATACTAATCT i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 48333839 0 + 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99631039 0 + 122082543 C e rheMac3.chr16 27690710 0 - 80904711 I a score=115413.000000 s hg38.chr17_JH159146v1_alt 270667 51 + 278131 ATAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGgagaaa s panTro4.chr17 66392516 51 - 82630442 ATAGACTTTTTATACACTAGCGATAATTCTCTCTAAAATTTAATGgagaaa i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48119179 51 - 81552678 ATAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGgagaaa i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53227669 51 + 80904711 GTAGACTTTTTATACACTAGCAATAATTCTTTCTAAAATTTAATGGAGAGA i rheMac3.chr16 I 1579 C 0 s macFas5.chr16 52792587 51 + 80997621 GTAGACTTTTTATACACTAGCAATAATTCTTTCTAAAATTTAATGGAGAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47797466 51 + 74645514 GTAGACCTTTTATACACTAGCAAtaattctttctaaaatttaatgGAGAGa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10060248 51 - 75148670 GTAGACTTTTTATACACTAGCAATAATTCTCTCTAAAATTTAATGGAGAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953482 50 + 159171411 ATAGAC-TTTTATACACTAAAAATCATTCTCTCTAAAATTTAATAGGAAAA i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 48333839 0 + 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99631039 0 + 122082543 C a score=322676.000000 s hg38.chr17_JH159146v1_alt 270718 187 + 278131 aatcacacactggggcctgtcgtggggtggggggagggaggagggatagcattaggagaaatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataat-aaaaaaaaaaaGAAG s panTro4.chr17 66392567 186 - 82630442 aatcacacactggggcctgtcgtggggtggggggagggaggagggatagcattaggagaaatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataat--ttaataaaaagaaG i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48119230 187 - 81552678 aatcacacactggatcctgtcgtggggtgcggggagggagaagggatagcattaggagaaatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacgtatgtaacaaacctgcacgttgtgcacaggtaccctagaacttaaagtataat-aaaaaaaaaaagaAG i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53227720 187 + 80904711 Aatcacacactggggcctattgtggagtgtggatgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataat-agaaaaaaaaagaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52792638 187 + 80997621 Aatcacacactggggcctattgtggagtgtggatgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataat-aaaaaaaaaaagaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47797517 188 + 74645514 aatcacacactggggcctactgtgGAGTGTGGAtgtgggggagggatagtatttggagaaatacctaacgtaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttaaagtataataaaaaaaaaaaagaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10060299 187 - 75148670 Aatcacacaccggggcctattgtggtgtgtgcatgtgggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaaccaacctgcacgttgtgcacatgtaccctagaacttcaaatataat-aaagaaaaaaagaaa i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 48333839 0 + 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99631039 0 + 122082543 C e calJac3.chr5 112953532 0 + 159171411 C a score=316647.000000 s hg38.chr17_JH159146v1_alt 270905 139 + 278131 CATGTACTCACAGTTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTTTGTGAAGGAAAATGTTAACATTTCCGGAAGGACATAAAATAATGTTTGAATAAATGTCAGAACAAGAGATGTGCAACGA s panTro4.chr17 66392753 139 - 82630442 CATGTTCTCACAGTTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGGCTATGTGAAGGAAAATGTTAACATTTCCTGAAGGACATAAAATAATGTTTGAATAAATATCAGAACAAGAGATGTGCAACGA i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48119417 139 - 81552678 CATGTACTCCCAATTCTCAAGAGTAAATAGAAAAATACGTAAATAAATCTGCCAAGCCTATGTGAAAGAAAGTGTTAACATTTCCTGAAGGACATAAAATAATGTTTGAATAAATGTCAGATCAAGAGACGTGCAACGA i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53227907 139 + 80904711 aATGTGCTCACAATTCTCAAGTATAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAAGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGAGGTGCAACCA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52792825 139 + 80997621 aATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAATAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAAGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGAGGTGCAACCA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47797705 139 + 74645514 aatgtgctcATAATTCTCAagagtaaatagaaaaatatgtaaataaatctgCCAAGCCTATATGAAGGAAAGTGTTAACATTTcctgaaagatataaaataatgtttgaatAAATGTCAGAACAAGTGAGGTGCAACCA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10060486 139 - 75148670 aATGTGCTCACAATTCTCAAGAGTAAATAGAAAAATATGTAAGTAAATCTGCCAAGCCTATATGAAGGAAAGTGTTAACATTTCCTGAAGGATATAAAATAATGTTTGAATAAATGTCAGAACAAGTGATGCGCAACCA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953532 139 + 159171411 TGTGTACTCACTATTCTCAAGAGTAAATAGAAAAATATATAAATAAATCTGCCAAGCCTATGTGAAGAAAAGTGCTAACATTTTCTGGAAGACATAAAATAATGTTTGAATAAATGTCAGAACAAGAGATGTGCAACCA i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 48333839 0 + 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99631039 0 + 122082543 C a score=33995.000000 s hg38.chr17_JH159146v1_alt 271044 13 + 278131 AAGCCAAGTTTTC s panTro4.chr17 66392892 13 - 82630442 AAGCCAAGTTTTC i panTro4.chr17 C 0 C 0 s nomLeu3.chr19 48119556 13 - 81552678 AAGCCAAGTTTTC i nomLeu3.chr19 C 0 C 0 s rheMac3.chr16 53228046 13 + 80904711 AAGCCAGGTTTTC i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52792964 13 + 80997621 AAGCCAGGTTTTC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47797844 13 + 74645514 AAGCCAGgttttc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10060625 13 - 75148670 AAGCCAGGTTTTC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953671 13 + 159171411 AAGCCAGCTTTTC i calJac3.chr5 C 0 C 0 s mm10.chr11 99631039 13 + 122082543 AGGCTAGGTGTGT i mm10.chr11 C 0 C 0 e ponAbe2.chr17 48333839 0 + 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T a score=1364405.000000 s hg38.chr17_JH159146v1_alt 271057 454 + 278131 AAATAAATACATACATGTTTTATGCATGCA---TTTAATGAGGATGTATCTCAATTTGCAACATTAGGTATTGAATGGGATTGGCAAAGAT-CATGATGGGAAACTTACTTTTGTTCACATTGTCACATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATCTAAACAT--CCTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAAT-TTTTCTACATATTCTGTTAAATATATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcagtcactgagatggagagcaatatgcaggaggtttattgaagcatgctcttgggattaacac s panTro4.chr17 66392905 454 - 82630442 AAATAAATACATACATGTTTTATGCATGCA---TTTAATGAGGATGTATCTCAATTTGCAACATTAGGTATTGAATGGGATTGGCAAAAAC-CATGATGGGAAACTTACTTTTGTTCACATTGTCACATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATCTAAACAT--CCTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAAT-TTTTCTACATATTCTGTTAAATATATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTAGATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCACGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcagacactgagatggagagcaacatacaggaggtttattgaagcatgctctcgggattaacac i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24894208 447 - 73212453 AAATAAATACATCCATGTGTTACGCATGCA---TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGGCAAAGAC-CGTGACAGGAAACTTACTTTTG--------GTTGCATTCTTTTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGCAT---------------------------------------------------------------------------------AAATGATCTAAACAT--CTTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAATATTTTCTACAGATTCTGTTAAATATATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaagaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgctcttgtgattaacac i ponAbe2.chr17 T 18831 C 0 s nomLeu3.chr19 48119569 455 - 81552678 GAATAAATACATACATGTGTTACGCATGCA---TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATTGACAAAGAC-CATGATGGGAAACTTACTTTTGGTCACATTGTCACATTCTTCTGTATTGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATCATCTAAACAT--CCTTAGA-------AAATAATAAATGTGATTTATATAAAATTCATAATTTTTTCTACAGATTCTGTTAAATGTATTTTCTGCTATTATGTTTACATTCTTATTTCTTTCAGGAACTAAAATATCAAAAGTACATTTCAGTCAGTCATTTGAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcaggctgggttccccaggaagcaggcactgagatggacagcaacatacaggaggtttattgaagcatgctcttgggattaacac i nomLeu3.chr19 C 0 N 0 s rheMac3.chr16 53228059 446 + 80904711 AAATAAATACATACATGTGTTACACATGCA---TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CATGATGGGAAGCTTACTTTTG--------GTCACATTCTTTCGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTGT---------------------------------------------------------------------------------AAATGATACAAAAAT--CCTTAGa-------aaataataaatatgatttata-aaaattcataattttttCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCATTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGAcaggctgcgttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaatcatgttcttgggattaacac i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52792977 446 + 80997621 AAATAAATACATACATGTGTTACACATGCA---TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CATGATGGGAAACTTACTTTTG--------GTCACATTCTTTCGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTGT---------------------------------------------------------------------------------AAATGATACAAAAAT--CCTTAGA-------AAATAATAAATATGATTTTTA-AAAATTCATAATTTTTTCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCTTTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGAcaggctgcgttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgttcttgggattaacac i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47797857 446 + 74645514 aaataaatacatacaggTGTTACACATGCA---TTTAATGAGGTTGTATCTCAATTTGTAACATTAGGTATTGAATGGAATCAGCAAAGAC-CGTGATGGGAAACTTACTTTTG--------GTCACATTCTTTCATATCGTCTAAATGTTTAAAGAgcatatatttgtgtgt---------------------------------------------------------------------------------aaatgatacaaaaat--ccttaga-------aaataataaatatgatttata-aaaattcataattttttctaCAGAttctgttaaatatattttctgctcttttgtttacattcttatttctttcatgaactaaaatattaaaagtacatTTCAGTCAGTCATCTGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCTGGGGGACAGGCTGCGTTCCCCAGGAAGCAGACACTGAGATGGAGAGCAACATGCAAGAGGTTTATTGACGCATGTTCTTGGGATTAAcac i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10060638 446 - 75148670 GAATAAATACATACATGTGTTACACATGCA---TTTAATGAGGATGTATCTCAATTTGTAACATTAGGTATTGAATGGGATCGGCAAAGAC-CATGATGGGAAACTTACTTTTG--------GTCACGTTCTTTTGTATCGTCTAAATGTTTAAAGAGCATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAGT--CCTTAGA-------AAATAATAAATATGATTTATA-AAAATTCATAATTTTTTCTACAGATTCTGTTAAATATATTTTCTGCTCTTTTGTTTACATTCTTATTTCTTTCATGAACTAAAATATTAAAAGTACATTTCAGTCAGTCATATGAGCTCTCAAATTAGCTATCATGAATTTCACATTGTTCCGGGGGAcaggctgggttccccaggaagcagacactgagatggagagcaacatgcaggaggtttattgaagcatgttcttgggattaacac i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112953684 439 + 159171411 GAATAAATACATACATGTGGTATAAATGCT---TTTAATGGGGAC-TATCTCAATTTGCAACACTAGGTCTTGAATGGGATTGGCAAAGAC-CATGATGGGAAACTTAATTTTG--------GTCACATTGTTTTGTATCATCTAAATGTTTAAAGCACATATATTTGTGTAT---------------------------------------------------------------------------------AAATGATATAAAAAT--CCTTAGa-------aaataataaatgtgatttatataaaatttataat-ttttCTACAG--TCTGCTAAACATTTTTTCTGCTATGGTGTTTACCTTCTTGTTTCTTTCATGAAGTAAAATATTGAAAGGACGTTTCAGTCTGTCATTTCAGCTCTCAAATTAGCTATCATGAATTTCAAATTGTTTTGGGGGAcagcctgggttccccaggaagcagacactgagatggagagcaatatgcaggaggtttattaaagc----tcttaggattaacac i calJac3.chr5 C 0 C 0 s mm10.chr11 99631052 525 + 122082543 GAGTGAGTG-ATGTTTGCTCACTACACGTATGGTTTAATAAGGCTGCACTGCA-----TACCAGTGGATCCTGAATGAGATTAGCAATGACTCACAAAGAGAAATTTACCTTTG--------GTCACAGACTATCGTGTTGCTTTAAATTCTAAAGACTCTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagaggatagagagGTTATCCTAGAAAGGTATAAATGATAAATGTTAATTGAATAAACTTAATAATTTTCTTCATGGATTATGTGCAACG-AGTTTCTGCCATCATGCTTGTATTCTTATTTCTACGAGGCACAGGCAGATTGAACATTCACTTTAATGAATAGTTACAGCTCTCAAGTCATCGATCGTGGG---CAGGTTTTT----GGAATAGATGGAAAtctccagagagcatgtgctgaggcagagatcggcatgctgaaggctcatggggacatgttctggggatcaac-- i mm10.chr11 C 0 C 0 e canFam3.chr9 39490234 1706 - 61074082 T a score=15379.000000 s hg38.chr17_JH159146v1_alt 271511 6 + 278131 tgggga s panTro4.chr17 66393359 6 - 82630442 tgggga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24894655 6 - 73212453 tgggga i ponAbe2.chr17 C 0 I 35219 s rheMac3.chr16 53228505 6 + 80904711 tgggga i rheMac3.chr16 C 0 I 10 s macFas5.chr16 52793423 6 + 80997621 tgggga i macFas5.chr16 C 0 I 10 s papAnu2.chr16 47798303 6 + 74645514 tgggga i papAnu2.chr16 C 0 I 10 s chlSab2.chr16 10061084 6 - 75148670 tgggga i chlSab2.chr16 C 0 I 10 s calJac3.chr5 112954123 6 + 159171411 tgagga i calJac3.chr5 C 0 C 0 e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99631577 0 + 122082543 C a score=56066.000000 s hg38.chr17_JH159146v1_alt 271517 102 + 278131 gggcaggggagg------------------------------------------------------ggaaagggaggggaggggaaagggaaagggaaggggaaggggaggga---------------------------------------------------------aagggaagggaagggaagggaagggaagg--------------------gaagggaagggaag s panTro4.chr17 66393365 158 - 82630442 gggcaggggagg------------------------------------------------------ggaaagggaggggaggggaaagggaaagggaaggggaaggggagggaaagaga-agggaagggaagggaaggggagggaaacagaagggaagggaagggaaaggaagggaagggaagggaggggaagggaagg--------------------gaagggaagggaag i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53228521 190 + 80904711 gggaaggggagggaaagggaggagaggagaggggaggggaggggaggggaggcaagg---------ggaaagggagggaaagggaaagggtaggggaaactgaaggaaagggaaagggaaggggaaaggaaaggaaaggga--------------aagggaagggaaggaaagggaaaggaagggaaaggaacggatgc--------------------gaagggaagggaag i rheMac3.chr16 I 10 C 0 s macFas5.chr16 52793439 190 + 80997621 gggaaggggagggaaagggaggagagga-----gaggggaggggaggggaggcaagg---------ggaaagggagggaaagggaaagggtaggggaaactgaaggaaagggaaagggaaggggaaaggaaaggaaaggga--------------aagggaagggaaggaaagggaaaggaagggaaaggaacggatgc---------------gaagggaagggaagggaag i macFas5.chr16 I 10 C 0 s papAnu2.chr16 47798319 205 + 74645514 gggaaggggagggaaagggaggagagga-----gaggggaggggaggggaggcaaggggaaagggagga---------aaagggaaagggtaggggaaactgaaggaaagggaaagggaaggggaaaggaaaggaaaggga--------------aagggaagggaaggaaagggaaaggaagggaaaggaacggatgcgaagggaagggaagggaagggaagggaagggaag i papAnu2.chr16 I 10 C 0 s chlSab2.chr16 10061100 91 - 75148670 gggaaggagagg------------------------------------------------------gga---------------------------------------------------ggggaacagaagggaaagcga--------------aagggaagg---gtaaggggaggggaagggaagggaagggatgc--------------------gaagggatgggaag i chlSab2.chr16 I 10 C 0 s calJac3.chr5 112954129 106 + 159171411 ggggaagggagg------------------------------------------------------gga------tgggaagggagaggaca-------------------gaaggggagggggaagggagaggaggggtg----------------------------aagaggaagagaggggctgggaggggaggg--------------------gaggggaaagaaag i calJac3.chr5 C 0 C 0 s mm10.chr11 99631577 11 + 122082543 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgtcctggaag i mm10.chr11 C 0 C 0 e ponAbe2.chr17 24894661 35219 - 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T a score=18803.000000 s hg38.chr17_JH159146v1_alt 271619 12 + 278131 ggaaaggaaggg s panTro4.chr17 66393523 12 - 82630442 ggaaaggaaagg i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53228711 12 + 80904711 ggaagggaaagg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52793629 12 + 80997621 ggaagggaaagg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47798524 12 + 74645514 ggaagggaaagg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10061191 12 - 75148670 ggaagggaaagc i chlSab2.chr16 C 0 C 0 s mm10.chr11 99631588 12 + 122082543 ggaaggaaagag i mm10.chr11 C 0 C 0 e ponAbe2.chr17 24894661 35219 - 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e calJac3.chr5 112954235 0 + 159171411 C a score=773735.000000 s hg38.chr17_JH159146v1_alt 271631 419 + 278131 aaagtgagagaaagatcaagtttgacactgggat-aaatcaaactgcagggcaatctccgtggaagtctcagatgaacctatagggagttctggagatgagatgacccattagaggcatccctagtt---ggggagaaatgtgggtctttataGTTTCATCCTAAAAAAAGGGCATGACTTTGGACGAAAAGAAA-AAAAATCA--GTCTCCAGCATAC-CTGTGAGTTTTCACTAGGCCTGCTTCCTTCATTTCCATCACCTGCCTGGCCGTGAAGGTGGCCCTCTCTACATGGCAGCATGAACTCCCCATTGAAACTCTGCCAGTCAGAATGAAGGAGATCCACTGTGTTTGTGTTGAGGATTCATTACACATGACTC---AGTAGAAAATACATGGACTTTGCTAAACCACCTAATAGCTGCTTTTA s panTro4.chr17 66393535 419 - 82630442 aaagtgaaaggaagatcaagtttgacactgggat-aaatcaaactgcagggcaatctccatggaagtctcagatgaacctatagggagttctggagatgagatgacccattagagtcatccctggtt---ggagagaaatgtgggtctttataGTTTCATCCTAAAAAGAGGGCATGACTTTGGACGAAAAGAAA-AAAAATCA--GTCTCCAGCATAC-CTGTGAGTTTTCACTAGGCCTGCTTCCTTCATTTCCATCACCTGCCTGGCCATGAAGGTGGCCCTCTCTACATGGCAGCATGAACTCCCCATTGAAACTCTGCCAGTCAGAATGAAGCAGATCCACTGTGTTTGTGTTGAGGATTCATTACACATGACTC---AGTAGAAAATACATGGACTTTGCTAAACCACCTATTAGCTGCTTTTA i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 8071 419 + 2193130 aagggaagggaaggatcaggtttgacactgggat-aaatcaaactgcagggcaatctcagtggaagtctcagatgaacctatagggagttctggagatgagatgaccctttagaagcaaccctagtt---ggggagaaatgtgggtctttataGTTTCATCCTAAAAAGAGGGGATGACTTTGGACAAAAAGAAA-AAAAATca--gtctccagcatac-ctatgagttttcaccaggcctgcttccttcatttccatcacctgcctggccATGAAGGTGGCCCTCTCTACATGGCAGCATGAACTCCCCATTGAAACTCTGCCAGTCAGAATGAAGCAGATCCAGTGTGTTTGTGCTGAGGATTCATTGCACATGACTC---AGTAGAAAATGCATGGACTTTGCTAAACCACCTATTAGCTGCTTTGA i nomLeu3.chrUn_GL397460_1 N 0 C 0 s rheMac3.chr16 53228723 420 + 80904711 aaatggagagaaagatcagtgttgacactaagat-aaatgaaactgcagggcaatctcagtggaagtctcagacgaacctacagggagttctggagatgagatgacccactaaaggcacccctagtt---ggggagaaatgcgagtctttataGTTCCATCCTAAAAACTGGGCATGACTTTGGACGAAAAGAAACAAAAATCA--GTCTCCAGCATAC-CTATGAGTTTTCACCAGGTGTGCTTCCTTCATTTCCATCACCTGCCTGGCCCTGAAGGTGGTCCCCTCTACATGGCAGCATGAACTCCCCACTGAAACTCTGCCAGTCAGAATGAAGCACATCCACTGTGTTTGTGTTGAGGTTTCATTGCACATGACTC---AGTAAAAAATACATGGACTATGCTAAATCACCTATTAGCTGCTTTTA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52793641 420 + 80997621 aaatggagagaaagatcagtgttgacactaagat-aaatgaaactgcagggcaatctcagtggaagtctcagacgaacctacagggagttctggagatgagatgacccactaaaggcacccctagtt---ggggagaaatgcgagtctttataGTTCCATCCTAAAAACTGGGCATGACTTTGGACGAAAAGAAACAAAAATCA--GTCTCCAGTATAC-CTATGAGTTTTCACCAGGTGTGCTTCCTTCATTTCCATCACCTGCCTGGCCCTGAAGGTGGTCCCCTCTACATGGCAGCATGAACTCCCCACTGAAACTCTGCCAGTCAGAATGAAGCACATCCACTGTGTTTGTGTTGAGGTTTCATTGCACATGACTC---AGTAAAAAATACATGGACTATGCTAAATCACCTATTAGCTGCTTTTA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47798536 420 + 74645514 aaatggagagaaagatCAGTGTTGACACTAAGAT-AAATGAAACTGCAGGGCAATCTCAGTGGAAGTCTCAGACGAACCTACAGGGAGTTCTGGAGATGAGATGACCCACTAAAGGCATCCCTAGTT---GGGGAGAAATGCGAGTCTTTATAGTTCCATCCTAAAAACTGGGCATGACTTTGGacgaaaagaaacaaaaatca--gtcTCCAGCATAC-CTATGAGTTTTCACCAGGTGTGCTTCCTTCATTTCCATCACCTGCCTGGCCCTGAAGGTGGTCCCCTCTACATGGCAGCATGAACTCCCCACTGAAACTCTGCCAGTCAGAATGAAGCACATCCACTGTGTTTGTGTTGAGGTTTCATTGCACATGACTC---AGTAAAAAATACATGGACTATGCTAAATCACCTATTAGCTGCTTTTA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10061203 416 - 75148670 aaatggacagaaagatccgttttgacactgggat-aaataaaaccgcagggcaatcttagtggaagtctcagatgaacctatagggagttctggagatgagatgacccactaaaggcatccctagtt---ggggagaaatgcgagtctttataGTTCCATCCTAAAAACTGGGCATGACTTTGGACAAAAAGAAACAAAAATCA--GTCTCCAGCATAC-CTA----TTTTCACCAGGTGTGCTTCCTTCATTTCCATCACCTGCCTGGCCCTGAAGGTGGTCCCCTCTACATGGCAGCATGAACTCCCCACTGAAACTCTGCCAGTCAGAATGAAGCACATCCACTGTGTTTGTGTTGAGGTTTCATTGCACATGACTC---AGTAAAAAATACATGGACTATGCTAAACCACCTATTAGCTGCTTTTA i chlSab2.chr16 C 0 C 0 s mm10.chr11 99631600 385 + 122082543 -----------atactgggattagatactgggacaaaacaaaactggaaggatacctcacgggcaggctaagtctgtcttctgcggagttcagaacatggaatgacGTGTTTGAAGCACGTCTAAATTCGGGAGGGAAATGTGCTTTTTGATCATGCCACCCGGGAAAG-GGGCA-GCCTTGGGG-----------AAATGTCACCACCTTCAGCAACTGCAATGAGTTCTGCCCAG--------TTTTCATCCACATTACCTGTCT-GCCTCAGAGATGGT-CTTTCTATGCAGAAGGATGTATGTCCCACTGATAATCTGCC---CCCGGTGAAGC-------CTGGATGTGGACACAGGCTT-ACCACACTTGACTCTGGAGTAGAACATATAATGATATTGCTAAGCTGACCACTGGTTGTGTTTA i mm10.chr11 C 0 I 2083 e ponAbe2.chr17 24894661 35219 - 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e calJac3.chr5 112954235 0 + 159171411 C a score=4011.000000 s hg38.chr17_JH159146v1_alt 272050 2 + 278131 CT s panTro4.chr17 66393954 2 - 82630442 CT i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 8490 2 + 2193130 CT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53229143 2 + 80904711 CT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52794061 2 + 80997621 CT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47798956 2 + 74645514 Ct i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10061619 2 - 75148670 CT i chlSab2.chr16 C 0 C 0 e ponAbe2.chr17 24894661 35219 - 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99631985 2083 + 122082543 I e calJac3.chr5 112954235 0 + 159171411 C a score=514958.000000 s hg38.chr17_JH159146v1_alt 272052 232 + 278131 GG---------------------------AAAAAAAAAGAAATTGAAATACAGTGTTTTAAAAGatcacagctctgtgcacaatagtaaagacatggaatcagtctaggtgcccatcaacagtgcattggataaagaacatgtgacattttcacaccatggaatactacacagcc-ataaaaaagaatgaaattttgtcctttgcagcaacatggatgtggctggaggacattatcttaagcaaatttttccaggaacag s panTro4.chr17 66393956 232 - 82630442 GG---------------------------AAAAAAAAAGAAATTGAAATACAGTGTTTTAAAATatcacagctctgtgcacaatagtaaagacatggaatcagtctaggtgcccatcaacagtgcattggataaagaacatgtgacattttcacaccatggaatactacacagcc-atacaaaagaatgaaattttgtcctttgcagcaacatggatgtggctggaggacattatcttaagcaaattattccaggaacag i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 8492 235 + 2193130 GGCC------------------------AAAAAAAAAAAAAATTGAAAGACAGTGTTTTAAAAGatcacggctctgtgcacaatagtaaagacatggaatcagtctaggtgcccatcaacagtacattggataaagaacatgtgacattttcacaccatggaatactacacagcc-ataaaaaacaatgaaattatgtcctttgcagcaacatggatgtgactggaggacattatcttaagcaaattattccaggaacag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53229145 258 + 80904711 GGCaaaaagaagaagaagaaggagaaggagaagaagaagaaATTGAAAGACAGTCTTTTAAAAGatcacagctctcttcacaatagtaaagacatggaatcagtctaggtgcccatcaatagtgcattggataaagaacatgtgacatcttcacaccatggaatactacacagcc-ataaaaaagaatgaaattatgtccttcgcagcaacatggaggtggctggaggac-ttatcttaagcaaattattccaggaacaa i rheMac3.chr16 C 0 I 98 s macFas5.chr16 52794063 258 + 80997621 GGCaaaaagaagaagaagaaggagaaggagaagaagaagaaATTGAAAGACAGTCTTTTAAAAGatcacagctctcttcacaatagtaaagacatggaatcagtctaggtgcccatcaatagtgcattggataaagaacatgtgacatcttcacaccatggaatactacacagcc-ataaaaaagaatgaaattatgtcctttgcagcaacatggaggtggctggaggac-ttatcttaagcaaattattccaggaacag i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47798958 259 + 74645514 ggcaaaaagaagaagaagaaggagaaggagaagaagaagaaattgaaagaCAGTCTTTTAAAAGATCACAGCTCtcttcacaatagtaaagacatggaatcagtctaggtgcccatcaatagtgcattggataaagaacatgtgacATCTtcacaccgtggaatactacacagcc-ataaaaaagaatgaaattatgtcctttgcagcaacatggaggtggctggaggacattatcttaagcaaattatcccaggaacag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10061621 259 - 75148670 GGCAAAaagaagaagaagaaggagaaggagaagaagaagaaATTAAAAGACAGTCTTTTAAAAGatcacagctctcttcacaatagtaaagacatggaatcagtctaggtgcccatcaatagtgcattggataaagaacatgtgacatcttcacaccgtggaatacaacacagcc-ataaaaaagaatgaaattatgtcctttgcagcaacatgtaggtggctggaggacattatcttaagcaaattattccaggaacag i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112954235 228 + 159171411 ---------------------------gaaggAAGGAAAAAACTGAAAGATGGTACTTTAAAAGatcacagcactgttcacaacagtaaagatatggaatccgtccaggctcccatcaacagtgcattggataaaaaaca--tgacatttttacaccatggaatactacacggccaataaaaaggagtaaaattatgtcttttgcagcaacatggatgtggct---ggacagtagcctaggcaaattattccaggaatag i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24894661 35219 - 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99631985 2083 + 122082543 I a score=85158.000000 s hg38.chr17_JH159146v1_alt 272284 50 + 278131 aaaaccaaatattgcatgttgtcacttacaaatgggagctaaacattgga s panTro4.chr17 66394188 50 - 82630442 aaaaccaaatattgcatgttgtcacttacaaatgggagctaaacattgga i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 8727 50 + 2193130 aaaaccaaatattgcatgttttcacttacaaatgggagctaaacattgag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 52794321 49 + 80997621 aaaacc-aatattgcatgttctcacttacaaatggaagctaaacattggg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47799217 49 + 74645514 aaaacc-aatattgcatgttctcacttacaaatggaagctaaacattggg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10061880 49 - 75148670 aaaacc-aatattgcatgttctcacttacaaatggaaactaaacattggg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112954463 50 + 159171411 aaaaccaaatattgcatgttctcacttacaaatggaagctaaacattggg i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24894661 35219 - 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99631985 2083 + 122082543 I e rheMac3.chr16 53229403 98 + 80904711 I a score=575957.000000 s hg38.chr17_JH159146v1_alt 272334 245 + 278131 tacacatggacacaaagatgagaacaactggggactccaaaaaggggggagagagggagagaggaagggctaaaaatgacccactgctcagtacctggtgacagaatcatttgtagcccaaacctcagcatcacacaacatgtaacaaatacgaatatgtactctttgattctaaaataaaagttgaaaTTATTTTTTAAAAGATGATGAGTTGTGATCAATCTTT-CAAAATGTTTCCCCTGTTG s panTro4.chr17 66394238 244 - 82630442 tacacatggacacaaagatgagaacaattgggaactccaaaaa-gggggagagagggagagaggaagggctaaaaatgacccactgctcagtacctggtgacagaatcatttgtagcccaaacctcagcatcacacaacatgtaacaaatacgaatatgtactctttgattctaaaataaaagttgaaaTTATTTTTTAAAAGATAATGAGTTGTGATCAATCTTT-CAAAACGTTTCCCCTGTTG i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 8777 243 + 2193130 tacacatggacacaaagatgagaataattagggactccaaaaa-gggggagagagggagagaggaagggctaaaaatgacccattgctcactacctggtgacagaatcatttgtaccccaaacctcagcatcacacaacatgtagcaaatatgaatatgtactctttgattctaaaataaaagttgaaaTT-TTTTTTAAAAGATATTTAGTTGTGTTCAATCTTT-CAAAACGTTTCCCCTGTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53229501 245 + 80904711 tacacatggacacaaagatgagaacaattggggactccaaaag-aggggagagagggagagaggaagggctaaaaatgacccattgctcactacctggtgacagaatcatttgtaccccaaacctcagcatcacacaacatgtaacaaatatgaatatgtactctttgattctaaaataaaagttgaaaTTGTTTTTTAAAAGAGAATGAATTGTGTTCAATCTTTCCAGAACGTTTCCCCTGTTG i rheMac3.chr16 I 98 C 0 s macFas5.chr16 52794370 245 + 80997621 tacacatggacacaaagatgagaacaattggggactccaaaag-gggggagagagggagaaagaaagggctaaaaatgacccattgctcactacctggtgacagaatcatttgtaccccaaacctcagcatcacacaacatgtaacaaatatgaatatgtactctttgattctaaaataaaagttgaaaTTGTTTTTTAAAAGAGAATGAATTGTGTTCAATCTTTCCAGAACGTTTCCCCTGTTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47799266 245 + 74645514 tacacatggacacaaagatgagaacaattggggactccaaaag-gggggagagagggagaaagaaagggctAAAAATGACCCATTGCTCACTACCTGGTGACagaatcatttgtaccccaaacctcagcatcacacaacatgtaacaaatatgaatatgtactctttgattctaaaataaaagttgaaattgttttttaaaagaaaatgaattgtaTTCAATCTTTCCAGAACGTTTCCCCTGTTG i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10061929 245 - 75148670 tacacatggacacaaatatgagaacaattggggactccaaaag-gggggagagagggagagaggaagggctaaaaatgacccattgctcactacctggtgacagaatcatttgtaccccaaacctcagcatcacacaacatgtaacaaatatgaatatgtactctttgattctaaaataaaagttgaaaTTATTTTTTAAAAGAGAATGAATTGTGTTCAATCTTCCCAGAACGTTTCCCCTGTTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112954513 242 + 159171411 tacacatggacacaaagatgggaataagtggggactccaaaaa-gggggagagaaggagagaggaaggactaagaatggcccattgctcactacctggtgacagaatcatttgtaccccaaacctcagcatcacacaa-atgtaaaaaatatgaatatgtactctttaattctaaaataaaagttgaaaT--TTTTTTAAAAGATAATGCATTGTATTCAATCTTTCCAAAACGTTTCCCCTGTTG i calJac3.chr5 C 0 C 0 e ponAbe2.chr17 24894661 35219 - 73212453 I e canFam3.chr9 39490234 1706 - 61074082 T e mm10.chr11 99631985 2083 + 122082543 I a score=474576.000000 s hg38.chr17_JH159146v1_alt 272579 199 + 278131 TTATATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAA---TACAAAATGACTAATTGATTTGCCTA-AGCCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGTGATCGATGTCAGTTGACCTCTGTTAGAAGGTTGACTAATCTGTGCTGTGAGCCCT-----ACAGGTGTAG-TTAAATGTAATCACCCAGG s panTro4.chr17 66394482 199 - 82630442 TTATATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACTAATTGATTTGCCTA-AGCCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGTGATCGATGTCAGTTGACCTCTGTTAGAAGGTTGACTAATCTGTGCTGTGAGCCCT-----ACAGGTGTAG-TTAAATGTAATCACCCAGG i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 9020 204 + 2193130 TTACATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACCAATTGATTTGCCTA-AGCCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGAGATCGATGTCAGTTGACCTCTGTTAGAAGGTCGACTAATCTGTGCTGTCTGCCCTACAGGACAGGTGTAG-TTAAATGTAATCACCCAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53229746 199 + 80904711 TTACATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACTAACTGATTTGACTA-AACCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGTGATCGATGTCAGTTGACCTCTGTTGGAAGTTTGACTAATCTGTGCTGTCTGCCCT-----ACAGGAGTAG-TTAAATGTAATCACCCAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52794615 199 + 80997621 TTACATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACTAACTGATTTGACTA-AACCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGTGATCGATGTCAGTTGACCTCTGTTGGAAGTTTGACTAATCTGTGCTGTCTGCCCT-----ACAGGAGTAG-TTAAATGTAATCACCCAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47799511 199 + 74645514 TTACATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACTAACTGATTTGACTA-AACCTGAAAAgacttttttagaaaaaaactagGCAGTGATCGATGTCAGTTGACCTCTGTTGGAAGTTTGACTAATCTGTGCTGTCTGCCCT-----ACAGGAGTTG-TTAAATGTAATCACCCAGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10062174 199 - 75148670 TTACATTCATGGATATTTCATGACTTC--AGCTTCACTCTTT------TTGTCTAAAGAC---TACAAAATGACTAACTGATTTGACTA-AACCTGAAAAGACTTTTCTAGAAAAAAACTAGGCAGTGATCGATGTCAGCTGACCTCTGTTGGAAGTTTGACTATTCTGTGCTGTCTGCCCT-----ACAGGAGTAA-TTAAATGTAATCACCCAGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112954755 198 + 159171411 TTATATTCATGTATATTTTATGACTTC--AGTTTCATTCTTT------TTATCCAAAGCC---TACAAGATGACTAGTTGATTTGCCTA-AGCCTGAAAAGACTTTTCTAG--AAAGTCTAGGCAGTGATCGATGTCAGTTGCCCTCTGTTGGTAAGTTGACTAATGTGTGCTTTCTGCCCT-----ACAGGTGTGGATAAAATGTAATCACCCAGA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39488528 201 - 61074082 TTATATACCTACAGTCTTCCAAACTTCTAGTTTTCACTTTTTTGTTTCTTTTCCAAGAACGGGTTCATAGTG-TTAGGTGATTAGCCCATGAAATAAGAAGGCATG--TAGGAAAGAATCAGGCAGTGAATAATAGAACCTGACTTTTATTGAGAAG-----TGACATGTG---TATATCCT-----GCAGGTGTAAGTTAAATATACTTGCCTACA i canFam3.chr9 T 1706 C 0 e ponAbe2.chr17 24894661 35219 - 73212453 I e mm10.chr11 99631985 2083 + 122082543 I a score=123959.000000 s hg38.chr17_JH159146v1_alt 272778 49 + 278131 ACCTAAATATAAAACCCTTTTTAAAAAGAGAATAAGAATCATATTCAAT s panTro4.chr17 66394681 49 - 82630442 ACCCAAATATAAAACCCTTTTTAAAAAGAGAATAAGAATCATATTCAAT i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 9224 49 + 2193130 ACCCAAATATAAAACCCTTTTTAAAAAGAGAATAAGAATCATATTCAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53229945 49 + 80904711 ACCCAAATATAAACCCCTTTTTAAAAAGAGAATAACAGCCATATTCAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52794814 49 + 80997621 ACCCAAATATAAACCCCTTTTTAAAAAGAGAATAACAGCCATATTCAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47799710 49 + 74645514 ACCCAAATATAAacccctttttaaaaagagaataacagCCATATTCAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10062373 49 - 75148670 ACCCAAATATAAACCCCTTTTTAAAAAGAGAATAACAGCCATATTCAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112954953 49 + 159171411 ACCCAAGTATAAAACCTTTGTAAGAAATGGAATAACAACCATATTCAAT i calJac3.chr5 C 0 C 0 s mm10.chr11 99634068 43 + 122082543 ATTTACATATATA----TTTTTAAAGAAAGA--AGCAGTCGCATTCAAT i mm10.chr11 I 2083 C 0 s canFam3.chr9 39488729 42 - 61074082 AGCTGAAGACAAAATCTT-------AAGGGAGCAACAATCACACTGAAT i canFam3.chr9 C 0 I 7312 e ponAbe2.chr17 24894661 35219 - 73212453 I a score=984696.000000 s hg38.chr17_JH159146v1_alt 272827 427 + 278131 TTTCAGTGCCAATAGAATAGAGGTTTA-TTTTGGTACATGGAAATAACAAGGTAC-AAAAATGTTTGCAAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTTGGAGGCTTT-AAGATCTGTGGCCCTACAAATGATGGAGGCAATCTTCAAATTCCTTAGGCATGATGAATAAATGTCCTGAAGTCAAAGAGGTGGGAGGATGTTGGA---GGACAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGAATTCCTTTGG-------------AAGGAAGGGAGTTTGGACAAAAGGTAGAATGCAAATACAGAATTTCTAAGGATGAGGTTTGCTTATGGGACCC---AGATCAATTCTCTTGAACAGTCCGCA-TGTTTGCAATGAGAGCCTTCATCTGTAGGAAAGGACGTAATAAGGAAGTGGTGTGTTCACAGCAGAGATTT s panTro4.chr17 66394730 427 - 82630442 TTTCAGTGCCAATAGAATAGAGGTTTA-TTTTGGTACATGGAAATAATAAGGTAC-AAAAATGTTTGCAAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTTGGAGGCTTT-AAGATCTGTGGCCCTACAAATGATAGAGGCAATCTTCAAATTCCTTAGGCATGATGAATAAATGTCCTGAAGTCAAAGAGGCGGGGGGATGTTGGA---GGACAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGGATTCCTTTGG-------------AAGGAAGGGAGTTTGGACAAAAGGTAGAATGCAAATACAGAATTTCTAAGGATGAGGTTTGCTTATGGGACCC---AGATCAATTCTCTTGAACAGTCCGCA-TGTTTGCAATGAGAGCCTTCATCTGTAGGAAAGGATGTAATAAGGAAGTGGTGTGTTCACAGCAGAGATTT i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 9273 426 + 2193130 TTTCAGTGCCAATCGAATAGAGGTTTA-TTTTGGTACATGGAAATAACAAGGTAC-AAAAATGTTTGCAAAAGACTTTAAGAGAGAGACTTCACTGGGCTTCAAGGTCGGAGGCATT-AAGATCTGTGGCCCTACAAATGATGGAGGCAATCTTCAAATTCCTTAGGCA-GATGAATAAATGTCCTGAAGTCAAAGAGGTGGGGGGATGTTGGA---GGGCAATT-TGTCAATTTATTAGGAGATTGCCA--------------ATGAATTCATTTGG-------------AAGGCAGGGAGTTTGGACAAAAGGTAGAATGCAAATACAGAATTTCTAAAGATGAGGTTTGCTTATGGGACCC---AGATCAGTTCTCTTGAACAGTCCACA-TGTTTGAAAAGAGAGCCTTCATCTGTAGGAAAGGAGGTAATAAGGAAGTGGTGTGTTCATAGCAGAGATTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53229994 402 + 80904711 TTTCGATGCCAATAAAATAGAGGTTTA-TTTTGGTATATGGAAATAACAAGGTGC-AAAAAGGTTTGCGAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTCGGAGGCATT-AAGATCTGTGGCCCTACAAATGATGGAGGCAGTCTTCAAATTCCTTAGGCACGATGAATAAATGTCCTGAAGTCAAAGAGGTAGGGGGATGTTGGA---GGGCAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGAATTCATTTGG-------------AAGGCAGGGAGTCTGGACAAAAGGTAGAATGAAAATACAGAATTTCTAAGGATGAGGCTTGCTTATGGGA----------------------------CACA-TGTTTGAAAAGAGAGCCCTCATCTGTAGGAAAGGAGGTAATAAGGAACTGGTGTGTTCATGGCAGAGCTTT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52794863 402 + 80997621 TTTCGATGCCAATAAAATAGAGGTTTA-TTTTGGTATATGGAAATAACAAGGTGC-AAAAAGGTTTGCGAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTCGGAGGCATT-AAGATCTGTGGCCCTACAAATGATGGAGGCAGTCTTCAAATTCCTTAGGCACGATGAATAAATGTCCTGAAGTCAAAGAGGTAGGGGGATGTTGGA---GGGCAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGAATTCATTTGG-------------AAGGCAGGGAGTCTGGACAAAAGGTAGAATGAAAATACAGAATTTCTAAGGATGAGGCTTGCTTATGGGA----------------------------CACA-TGTTTGAAAAGAGAGCCCTCATCTGTAAGAAAGGAGGTAATAAGGAACTGGTGTGTTCATGGCAGAGCTTT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47799759 402 + 74645514 TTTCGATGCCAATAGAATAGAGGTTTA-TTCTGGTATATGGAAATAACAAGGTGC-AAAAAGGTTTGCGAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTCGGAGGCATT-AAGATCTGTGGCCCTACAAATGATGGAGGCAGTCTTCAAATTCCTTAGGCACGATGAATAAATGTCCTGAAGTCAAAGAGGTAGGGGAATGTTGGA---GGGCAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGAATTCATTTGG-------------AAGGCAGGGAGTCTGGACAAAAGGTAgaatgaaaatacagaatttctAAGGATGAGGCTTGCTTATGGGA----------------------------CACA-TGTTTGAAAAGAGAGCCCTCATCTGTAGGAAAGGAGGTAATAAGGAACTGGTGTGTTCATGGCAGAGCTTT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10062422 402 - 75148670 TTTCGATGCCAATAGAATAGAGGTTTA-TTTTGGTATATGGAAATAACAAGGTGC-AAAAAGGTTTGCGAAAGACTTTAAGAGAGAGACTTCACTGGACTTCAAGGTCGGAGGCATT-AAGGTCTGTGGCCCTACAAATGATGGAGGCAGTCTTCAAATTCCTTAGGCACGATGAATAAATGTCCTGAAGTCAAAGAGGTGGGGGGATGTTGGA---GGGCAATT-TGTCAATTTATTAGGAGATTGTCA--------------ATGAATTCATTTGG-------------AAGGCAGGGAGTTTGGACAAAAGGTAGAATGAAAATACAGAATTTCTAAGGATGAGGCTTGCTTATGGGG----------------------------CACA-TGTTTGAAAAGAGAGCCCTCATCTGTAGGAAAGGAGGTAATAAGGAACTGGTGTGTTCATGGCAGAGCTTT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955002 422 + 159171411 TTT-AGTGCCAATAGCATAGAAGTTTA-TTTTGGTACATGGAAACAACAAAGTAC-AAAAATCTTTGCAAAAGACTTTA----AGAGACTTCACTGGACTTCGAGGTGGGAGGCATT-AAGATCTGTGGCCCTACAAATGATGGAGGCAATCTTCAAATTCTTTAGGCATGATGAATAAATGTCCTGAAGTCAAAGAGGCGGGGGGATGTTGGA---GAGAAATT-TGTAGGTTTATTAGGAGACTCTCG--------------ATGAATTCATTTGG-------------AAGGCAGAGAGTTTGGACAAAAGATAGAGTGCAAATACAGAATTTGGAAGGATGAAGTTTGCTTATGGGACAC---AGATCAGTTCTCTTGAACAATCCACA-TGTTTTAAAGCAGAGCCTTCATCTGTAGAAAAGGAGGTGATAAGGAAGTGGTGTGTTCAAAGCAAAGATTT i calJac3.chr5 C 0 C 0 s mm10.chr11 99634111 411 + 122082543 TTTTATTATCCTTGTGTTGGATGTTTATTTTTGTTACACAGAAGTAGTAAAGTATGAAAAATCTTTGCAAAAG-CTATAAAAGACAA---TTAGTGGATTTTAATGTCATGGGGATTAAAAATGCATACTCATCTAAGTGCCAGGGATAA--TTTAAATTCCTCCAGCATGATGAATAGATA----AAAATACAAGGTGAGACATGTTGTGGGA---G----ATC-TGTTAAGCTATTTGGAGGTATTTG--------------ATAAAATCATTTT---------------AAGCAAGAGTTTTGGACAGAAGTCAGAATGTTCACACGGAACAATTGCAAACAAGTCTGACTTCTGGGACTCAGGAGATCAAGTCCCTCAAACACTATGCACTTTTTAGAAGGAAGGACTTCATCTGCTGAGATTGAAGAGATAAA----TGGCATATTCAA---AGAGATTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39496083 406 - 61074082 TTTCTAGGCCAGGAAAGTGGAACTTTA-TTCAGA-----AGCAGCAACAAGATTC-AGAAACATTC--------CTGTAACAGGAAA--TACA---GACTTTTGGATCTGAGGCTGT-AACAGCAGTGTCCCTGTGGGCCCTGCAGGAATTTCT---GTGTTTGGGACAGAGTGACTTGGCACCCAGAAATCAAAAGGTCA----GATGTAGAATTTGGGCAATTCTAGTAATTTCTTCTATGAATATCATCTAATTTCATACTCTGAGTCCACCTGAGGAAATGGTCAACAAAGGTGAGAGTTTGGCCTGAGGCTGGGGTGTGGGCATACAGTTGTTGGGAATG-GCCACCCCTAAGGCA--------------------------TCCACA-TGGT---ATATAGAGTCTGCTGCTATGATGAACCCAATGAAGGGGAGAGGGTAGGTTCAGGGAAAGGTCTC i canFam3.chr9 I 7312 C 0 e ponAbe2.chr17 24894661 35219 - 73212453 I a score=625991.000000 s hg38.chr17_JH159146v1_alt 273254 145 + 278131 AGCAGCAAGAGGAGGCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGC---------------AGCAGCTGGATT------------------------------CACAGCAAGA s panTro4.chr17 66395157 145 - 82630442 AGCAGCAAGAGGAGGCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGTGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggggcggc---------------agcagctggatt------------------------------cacagcaaga i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24929880 160 - 73212453 AGCAGCAAGAGGAGGCACAGCACAAGGGACGGGGGCAGGTGGAAATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggggcggcagcagcaggggcggtagcagctggatt------------------------------cacagcaaga i ponAbe2.chr17 I 35219 C 0 s nomLeu3.chrUn_GL397460_1 9699 145 + 2193130 AGCAGCAAGAGGAGGCACAGCACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGC---------------AGCAGCTGGATT------------------------------CACAGCAAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230396 145 + 80904711 AGCAGCAAGAGGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggggcggc---------------agcagctggatt------------------------------cacagcagct i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795265 145 + 80997621 AGCAGCAAGAGGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGC---------------AGCAGCTGGATT------------------------------CACAGCAGCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800161 145 + 74645514 AGCAGCAAGAGGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACgcaggcagcagcaagggcggc---------------agcagctggatt------------------------------cacagcagga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10062824 175 - 75148670 AGCAGCAAGAGGAGGCACAACACAAGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGGCAGCAGCAGGGGCGGC---------------AGCAGCTGGATTCACAGCAAGAGGGACGACAGCAGCTGGACACACAGCAGCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955424 145 + 159171411 AGCAGCAAGAGGAGGTGCAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGACGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAGACTGGACGCAGgcagcagcaggaacgac---------------agcagttggatt------------------------------cacagcaaga i calJac3.chr5 C 0 C 0 s mm10.chr11 99634522 151 + 122082543 AGCAGCAGGGGATGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAGACTGGTCTCAGAcagcagcaggggcggc---aacaggggc---ggcagcagggtc------------------------------ggcagca--- i mm10.chr11 C 0 C 0 s canFam3.chr9 39496489 130 - 61074082 AGCAGCAGGAAGAAGCACAGCACATGGGACGGGGGCAGGTGGAGATAACACAGGTGGGGCGATAGCAAGTGGTGTGGCAGGAGACCTGGCCACAGATTGGGCGCAGAcagcaggaggggcagc---------------agca---gga------------------------------------------ i canFam3.chr9 C 0 T 27025 a score=102608.000000 s hg38.chr17_JH159146v1_alt 273399 29 + 278131 GGGGCAGCAGCTGCTGGAGATGCAGCAGC s panTro4.chr17 66395302 29 - 82630442 ggggcggcagctgctggagatgcagcagc i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930040 14 - 73212453 ggggcg---------------gcagcagc i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 9844 29 + 2193130 GGGGTGGCAGCTGCTGGAGATGCAGCAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230541 29 + 80904711 ggggcggcagcagctggagatgcagcagc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795410 29 + 80997621 GGGGCGGCAGCAGCTGGAGATGCAGCAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800306 29 + 74645514 ggggcggcagcagctggagatgcagcagc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10062999 29 - 75148670 GGGGCGGCAGCAGCTGGAGATGCAGCAGC i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955569 29 + 159171411 ggggcggcagcagctggagacgcagcagc i calJac3.chr5 C 0 C 0 s mm10.chr11 99634673 23 + 122082543 gggacggcaaca---ggggctgcagc--- i mm10.chr11 C 0 C 0 s canFam3.chr9 39469594 29 - 61074082 ggggcggcagcagctagagatgcagcagc i canFam3.chr9 T 27025 C 0 a score=335511.000000 s hg38.chr17_JH159146v1_alt 273428 97 + 278131 TGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAAGTGGTCCT s panTro4.chr17 66395331 97 - 82630442 tggggcagcagcagGTGGGCTGGCAGCACACAGACTGACCGCACTGGGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAAGTGGTCCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930054 93 - 73212453 tgggacggcagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCACCTGGACACACAGGAGCTGGGGCGACAGCAGCTGG---- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 9873 93 + 2193130 TGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGACAGCAGCTGG---- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230570 97 + 80904711 tggggcgacagcaggtgggctggcagcacacagactggcagcactggggtctgcagcagctggacacacagcagctggggcggcagcaAGTGGTCCT i rheMac3.chr16 C 0 I 28004 s macFas5.chr16 52795439 97 + 80997621 TGGGGCGACAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAAGTGGTCCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800335 93 + 74645514 tggggcggcagcaggtgggctggcagcaCACAGACTGGCAGCACTGGGGTCTgcagcagctggacacacagcagctggggcggcagcagctgg---- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063028 97 - 75148670 TGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGGACGGCAGCAAGTGGTCCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46168734 82 - 159171411 TGGGGCGGCAGCAGGTGGTCCTGCAGCAGGTTGTCTGACAGCACTGGGGCCTgcagcagctggacacacagcagctggggcg--------------- i calJac3.chr5 T 72529 C 0 s mm10.chr11 99634696 76 + 122082543 aagggctgcagcagg---------------------ggcggcagcaggggcggcagcaACTAGAACCACAGCAGCTGGAGCTACCACAGGAGGGTTG i mm10.chr11 C 0 C 0 s canFam3.chr9 39469623 97 - 61074082 tgggcctgcagcagctggagccacagcagctggaaccggagcaggaggggcggcagcagCTGGACACACAGCAGCTGGGGCGGCAGCAGGTGGTCCT i canFam3.chr9 C 0 C 0 a score=21852.000000 s hg38.chr17_JH159146v1_alt 273525 11 + 278131 GCAGCAGGTGG s panTro4.chr17 66395428 11 - 82630442 GCAGCAGGTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930147 5 - 73212453 -----AGATG- i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 9966 5 + 2193130 -----AGATG- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53258671 11 + 80904711 GCAGCAGGTGG i rheMac3.chr16 I 28004 C 0 s macFas5.chr16 52795536 11 + 80997621 GCAGCAGGTGG i macFas5.chr16 C 0 T 5908 s papAnu2.chr16 47800428 5 + 74645514 -----agatg- i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063125 11 - 75148670 GCAGCAGGTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46168816 11 - 159171411 gcagcagctgg i calJac3.chr5 C 0 I 3 s mm10.chr11 99634772 11 + 122082543 ACAGCAGCTGG i mm10.chr11 C 0 I 3 s canFam3.chr9 39469720 11 - 61074082 GCAGCAGGTGG i canFam3.chr9 C 0 C 0 a score=1365.000000 s hg38.chr17_JH159146v1_alt 273536 1 + 278131 T s panTro4.chr17 66395439 1 - 82630442 T i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53258682 1 + 80904711 T i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789639 1 + 80997621 T i macFas5.chr16 T 5908 C 0 s chlSab2.chr16 10063136 1 - 75148670 T i chlSab2.chr16 C 0 I 56289 s canFam3.chr9 39469731 1 - 61074082 T i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24930152 0 - 73212453 C e mm10.chr11 99634783 3 + 122082543 I e calJac3.chr5 46168827 3 - 159171411 I e papAnu2.chr16 47800433 0 + 74645514 C e nomLeu3.chrUn_GL397460_1 9971 0 + 2193130 C a score=-772.000000 s hg38.chr17_JH159146v1_alt 273537 3 + 278131 CTG s panTro4.chr17 66395440 3 - 82630442 CTG i panTro4.chr17 C 0 C 0 s rheMac3.chr16 53258683 3 + 80904711 CTG i rheMac3.chr16 C 0 I 135 s macFas5.chr16 52789640 3 + 80997621 CTG i macFas5.chr16 C 0 C 0 s chlSab2.chr16 10119426 3 - 75148670 CTG i chlSab2.chr16 I 56289 C 0 s calJac3.chr5 46168830 1 - 159171411 c-- i calJac3.chr5 I 3 C 0 s mm10.chr11 99634786 1 + 122082543 T-- i mm10.chr11 I 3 C 0 s canFam3.chr9 39469732 3 - 61074082 CTG i canFam3.chr9 C 0 C 0 e ponAbe2.chr17 24930152 0 - 73212453 C e papAnu2.chr16 47800433 0 + 74645514 C e nomLeu3.chrUn_GL397460_1 9971 0 + 2193130 C a score=67378.000000 s hg38.chr17_JH159146v1_alt 273540 15 + 278131 ACAGCAGCTGGGGCG s panTro4.chr17 66395443 15 - 82630442 ACAGCAGCTGGGGCG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930152 14 - 73212453 -CAGCAGCTGGGATG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 9971 14 + 2193130 -CAGCAGCTGGGGCG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53258821 15 + 80904711 gcagcagctggggcg i rheMac3.chr16 I 135 T 28169 s macFas5.chr16 52789643 15 + 80997621 ACAGCAGCTGGGGCG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800433 14 + 74645514 -cagcagctggggcg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10119429 15 - 75148670 GCAGCAGCTGGGGTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46168831 15 - 159171411 acagcagctggggcg i calJac3.chr5 C 0 C 0 s mm10.chr11 99634787 15 + 122082543 GCAGCAGCTGGGGCG i mm10.chr11 C 0 C 0 s canFam3.chr9 39469735 15 - 61074082 GCAGCAGGAGGGGCG i canFam3.chr9 C 0 C 0 a score=37650.000000 s hg38.chr17_JH159146v1_alt 273555 8 + 278131 GCAGCAGG s panTro4.chr17 66395458 8 - 82630442 GCAGCAGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930166 8 - 73212453 GCAGCAAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 9985 8 + 2193130 GCAGCAGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230667 8 + 80904711 GCAGCAGG i rheMac3.chr16 T 28169 C 0 s macFas5.chr16 52789658 8 + 80997621 GCAGCAGC i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800447 8 + 74645514 gcagcagg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10119444 8 - 75148670 GCAGCAGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 46168846 8 - 159171411 gcagcagc i calJac3.chr5 C 0 n 0 s mm10.chr11 99634802 8 + 122082543 GCAGCAGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39469750 8 - 61074082 GCAGCAGG i canFam3.chr9 C 0 C 0 a score=6780.000000 s hg38.chr17_JH159146v1_alt 273563 3 + 278131 --TGG s panTro4.chr17 66395466 3 - 82630442 --TGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930174 3 - 73212453 --TGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 9993 3 + 2193130 --TGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230675 3 + 80904711 --TGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52789666 3 + 80997621 --TGG i macFas5.chr16 C 0 I 5878 s papAnu2.chr16 47800455 3 + 74645514 --tgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10119452 3 - 75148670 --TGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955598 3 + 159171411 --tgg i calJac3.chr5 C 0 C 0 s mm10.chr11 99634810 3 + 122082543 --TCG i mm10.chr11 C 0 C 0 s canFam3.chr9 39469758 3 - 61074082 TCT-- i canFam3.chr9 C 0 C 0 a score=24755.000000 s hg38.chr17_JH159146v1_alt 273566 5 + 278131 GCTGG s panTro4.chr17 66395469 5 - 82630442 GCTGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930177 5 - 73212453 GCTGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 9996 5 + 2193130 GCTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230678 5 + 80904711 GCTGG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795547 5 + 80997621 GCTGG i macFas5.chr16 I 5878 C 0 s papAnu2.chr16 47800458 5 + 74645514 gctgg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10119455 5 - 75148670 GCTGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955601 5 + 159171411 gctgg i calJac3.chr5 C 0 C 0 s mm10.chr11 99634813 5 + 122082543 GCTGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39469761 5 - 61074082 CCTGG i canFam3.chr9 C 0 I 27025 a score=49885.000000 s hg38.chr17_JH159146v1_alt 273571 11 + 278131 CAGCACACAGA s panTro4.chr17 66395474 11 - 82630442 CAGCACACAGA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930182 11 - 73212453 CAGCACACAGA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 10001 11 + 2193130 CAGCACACAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230683 11 + 80904711 CAGCACACAGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795552 11 + 80997621 CAGCACACAGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800463 11 + 74645514 cagcacacaga i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10119460 11 - 75148670 CAGCACACAGA i chlSab2.chr16 C 0 T 56334 s calJac3.chr5 112955606 11 + 159171411 cagcacacaga i calJac3.chr5 C 0 C 0 s mm10.chr11 99634818 11 + 122082543 CAGCACACAGA i mm10.chr11 C 0 C 0 s canFam3.chr9 39496791 11 - 61074082 CAGCAGGTGGT i canFam3.chr9 I 27025 C 0 a score=445673.000000 s hg38.chr17_JH159146v1_alt 273582 154 + 278131 CTGGCAGCACTGGGGTCTGCAGCAGCTGGAC------------------------------------------------------------ACAC------------------------------------------------------------------------------------------AGCAGCTGGGGCGGCAGCAGGTGGTCCTACAGCAGGTGGTCTG------------------------------------------------------------ACAGCAGCTGGGGCGGCAGCAGGTGGGCTGACAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA s panTro4.chr17 66395485 154 - 82630442 CTGGCAGCACTGGGGTCTGCAGCAGCTGGAC------------------------------------------------------------ACAC------------------------------------------------------------------------------------------AGCAGCTGGGGCGGCAGCAGGTGGTCCTACAGCAGGTGGTCTG------------------------------------------------------------ACAGCAGCTGGGGCGGCAGCAGGTGGGCTGACAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930193 214 - 73212453 CTGGCAGCACTGGGGTCTGCAGCAGCTGGACACACTGCAGCTGGGGTGGCAGCAGGTGGTCTGGCAGCACTGGGGTCTGCAGCAGCTGGATACAC------------------------------------------------------------------------------------------AGCAGCTAGGGCGGCAACAGGTGGTCCTGCAGCAGGTGGTCTG------------------------------------------------------------ACAGCAGCTGGGACGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACA i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 10012 154 + 2193130 CTGGCAGCACTGGGGCCTGCAGCAGCTGGAC------------------------------------------------------------ACAC------------------------------------------------------------------------------------------AGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGGTGGTCTG------------------------------------------------------------GCAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230694 139 + 80904711 CTGGCAGCACTGGGGTCTGCAGCAGCTGGAC------------------------------------------------------------ACAc------------------------------------------------------------------------------------------agcagctggggcggcagcagctgg---------agatg------------------------------------------------------------------cagcagctggggcggcagcaggtgggctggcagcacacagactggcagcactggggtctgcagcagctggacaca i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795563 139 + 80997621 CTGGCAGCACTGGGGTCTGCAGCAGCTGGAC------------------------------------------------------------ACAC------------------------------------------------------------------------------------------AGCAGCTGGGGCGGCAGCAGCTGG---------AGATG------------------------------------------------------------------CAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTGCAGCAGCTGGACACG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800474 229 + 74645514 ctggcagcactggggcctgcagcagctggac------------------------------------------------------------acacagcagctggggcGGCAGCAAGTGGTCCTGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGTCTgcagcagctggacacacagcagctggggcggcagcagctgg---------agatg------------------------------------------------------------------cagcagctggggcggcagcaggtgggctggcagcacacagactggcagcactggggcctgcagcagctggacaca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063137 139 - 75148670 CTGGCAGCACTGGGGCCTGCAGCAGCTGGAC------------------------------------------------------------ACAC------------------------------------------------------------------------------------------AGCAGCTGGGGCGGCAGCAGCTGG---------AGATG------------------------------------------------------------------CAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCATACAGATTGGCAGCACTGGGGCCTGCAGCAGCTGGACACA i chlSab2.chr16 T 56334 C 0 s calJac3.chr5 112955617 214 + 159171411 ctggcagcactggggtctgcaacagctggag------------------------------------------------------------atgc------------------------------------------------------------------------------------------agcagctgggtcggcagcaAGTGGTCCTGCAGCAGGTGGTCTGgcagcatctgggacggcagcaactggattgacagcaagaggggcggcagcagctggagatgcagcagctggggcggcagcaagtgggctggcagcacacagactggcagcactggggcctgcagcagctggacaca i calJac3.chr5 C 0 C 0 s mm10.chr11 99634829 79 + 122082543 CTGGCAGCACTGGGGCCTGCAGCAACTGGGC------------------------------------------------------------CTGC------------------------------------------------------------------------------------------AGCAGCTGG------------------------ACACA------------------------------------------------------------------CAGCAGCT---------------------------------------------GGGCCTGCAGCAGCTGGACACA i mm10.chr11 C 0 C 0 s canFam3.chr9 39496802 139 - 61074082 CTGGCAGCAAGTGGGgcggcagcagctggac------------------------------------------------------------acac------------------------------------------------------------------------------------------agcagctgggcctgcagcagctag---------agcca------------------------------------------------------------------cagcagctggaactagagcaggaggggcggcagcaactggagatgcagcagctgggacggcagcaggtggtctgg i canFam3.chr9 C 0 T 27175 a score=147584.000000 s hg38.chr17_JH159146v1_alt 273736 37 + 278131 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGG s panTro4.chr17 66395639 37 - 82630442 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930407 22 - 73212453 CAGCAGCTGGGGCG---------------GCAGCAGG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 10166 37 + 2193130 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230833 37 + 80904711 cagcagctggggcggcagcaggtggtcctgcagcagg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795702 37 + 80997621 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800703 37 + 74645514 cagcagctggggcggcagcaggtggtcctgcagcagg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063276 37 - 75148670 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955831 37 + 159171411 cagcagctggggcggcagcagGTGGTCCTGCAGCAGG i calJac3.chr5 C 0 C 0 s mm10.chr11 99634908 37 + 122082543 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTACAGCAGG i mm10.chr11 C 0 C 0 s canFam3.chr9 39469766 37 - 61074082 CCACAGCCCTGGTCAGAGCAGACCGATCCACAACAGG i canFam3.chr9 T 27175 I 27175 a score=123239.000000 s hg38.chr17_JH159146v1_alt 273773 29 + 278131 TGGTCTGGCAGCAGCTGGGGCGGCAGCAG s panTro4.chr17 66395676 29 - 82630442 TGGTCTGGCAGCAGCTGGGGCGGCAGCAG i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930429 29 - 73212453 TGGTCTGACAGCAGCTGGGGCAGCAGCAG i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 10203 29 + 2193130 TGGTCTGGCAGCAGCTGGGGCGGCAGCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230870 29 + 80904711 tggtctggcagcagctggggcggcagcag i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795739 29 + 80997621 TGGTCTGGCAGCAGCTGGGGCGGCAGCAG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800740 29 + 74645514 tggtctggcagcagctggggcggcagcag i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063313 29 - 75148670 TGGTCTGGCAGCAGCTGGGGCGGCAGCAG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955868 29 + 159171411 TGGTCTGACAGCAGCTGGGGCGGCAGCAG i calJac3.chr5 C 0 C 0 s mm10.chr11 99634945 29 + 122082543 TGGTTTGGCAGCAGCTGGGCTGGCAGCAG i mm10.chr11 C 0 I 1 s canFam3.chr9 39496978 26 - 61074082 agg---ggcagcagcagGTCTCCTGGCAG i canFam3.chr9 I 27175 C 0 a score=5196.000000 s hg38.chr17_JH159146v1_alt 273802 4 + 278131 -TTCT s panTro4.chr17 66395705 4 - 82630442 -TTCT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930458 4 - 73212453 -GTCT i ponAbe2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 10232 4 + 2193130 -TTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230899 4 + 80904711 -GTCT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795768 4 + 80997621 -GTCT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800769 4 + 74645514 -GTCT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063342 4 - 75148670 -GTCT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955897 4 + 159171411 -TTCT i calJac3.chr5 C 0 C 0 s canFam3.chr9 39497004 4 - 61074082 AGGC- i canFam3.chr9 C 0 C 0 e mm10.chr11 99634974 1 + 122082543 I a score=409872.000000 s hg38.chr17_JH159146v1_alt 273806 98 + 278131 CCAGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGGAGGTTCTCGGTGGGTTTCCAGGAGAGTGAGT s panTro4.chr17 66395709 98 - 82630442 CCAGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGGAGGTTCTCGGTGGGTTTCCAGGAGAGTGAGT i panTro4.chr17 C 0 C 0 s ponAbe2.chr17 24930462 98 - 73212453 CCAGGCCACAGCCGTGGTCAGAGCAGACGGAACCACAACAGGAGCTGACCATGGTGTCAGAGGGTAAAGGTTCTGGGTGGGTTTCCAGGAGAGTGAGT i ponAbe2.chr17 C 0 N 0 s nomLeu3.chrUn_GL397460_1 10236 98 + 2193130 CCAGGCCACAGCCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGTGGTGGTTCTCAGTGGGTTTCCAGGAGAATGAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53230903 98 + 80904711 CCAGTCCACAGCCCTGGTCAGAGCAGACGGAACCACAACAGGAGCTGACCATGGTGTCAGAGGGTGGAGGTTCTCGGTGGGTTTCTAGGAGAGTGAGT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795772 98 + 80997621 CCAGTCCACAGCCCTGGTCAGAGCAGACGGAACCACAACAGGAGCTGACCATGGTGTCAGAGGGTGGAGGTTCTCGGTGGGTTTCTAGGAGAGTGAGT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800773 98 + 74645514 CCAGTCCACAGCCCTGGTCAGAGCAGACGGAACCACAACAGGAGCTGACCATGGTGTCAGAGGGTGGAGGTTCTCGGTGGGTTTCTAGGAGAGTGAGT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063346 98 - 75148670 CCAGTCCACAACCCTGGTCAGAGCACACAGAGCCACAACAGGAGTTGACCATGGTGTCAGAGGGAGGAGGTTCTCAGTGGGTTTCTAGGAGAGTGAGT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955901 98 + 159171411 CCAGGCCACAGCCCTGGTCAGAGCAGACAGAGCTACAACAAGAGTTGACCATGGTGTCAGAGGGTGGAGGTTCTGGATGGGTTTCCAGGAGAGTGAGT i calJac3.chr5 C 0 C 0 s mm10.chr11 99634975 94 + 122082543 CTTGGCCACAGCCCTCTTCAGAGCAGACAGAGCCACAA---GAGCTGACCATGGTGTCAGA-GGTGGAGGTTCTGGGTAGGCTTACAAGATGGGGAGA i mm10.chr11 I 1 C 0 s canFam3.chr9 39497008 95 - 61074082 CATGGCCGCAGCCCTGGTCAGAGCAGACAGAGCCACAA---GAACTAACCATGGTGTCAGAGAGTGGAAGTCGTGGATGGGTTTCCAAGAGAGTGAGG i canFam3.chr9 C 0 C 0 a score=66415.000000 s hg38.chr17_JH159146v1_alt 273904 23 + 278131 GTTCTGAGTTT-GATCTCTCCTTG s panTro4.chr17 66395807 23 - 82630442 GTTCTGAGTTT-GATCTCTCCTTG i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 10334 23 + 2193130 GCTCTGAGTTT-GACCTCTCCTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53231001 23 + 80904711 TTTCTGAGTTT-GATCTCTCCTTG i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795870 23 + 80997621 TTTCTGAGTTT-GATCTCTCCTTG i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800871 23 + 74645514 TTTCTGAGTTT-GTTCTCTCCTTg i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063444 23 - 75148670 ATTCTGAGTTT-GATCTCTCCTTG i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112955999 23 + 159171411 GTTCTGAGTTT-GATCTCTCCTTG i calJac3.chr5 C 0 C 0 s mm10.chr11 99635069 23 + 122082543 GTTCCTTGTCT-AGTCTCTTCCTT i mm10.chr11 C 0 C 0 s canFam3.chr9 39497103 24 - 61074082 GTCTTGAGTTTGGAAGTCTCCTTG i canFam3.chr9 C 0 T 27248 a score=3198306.000000 s hg38.chr17_JH159146v1_alt 273927 1144 + 278131 TTCTCTCTTTTGCTTTTTATACCCTGCTGAGAACCACTATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGTTG-TTTTTTAGTAAATTAGATAGTTGTCCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCAACATTTCCTTTTCCTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTCCTTCCTTCATCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGA----------------TTAATTCTTTATTT----ATTTGACTCCTGGATAATAAGTTGAAAATAGATTTTATGATGACTAAATCTCCTCTGCTCTCAAAGAGGTTAAAAATAAATTACATAGAATGCTGGTAGGAAAATGTGATGAAAGATTCATCTTTGGGGGGT-----GATAGGAGGTA---ACTTGTGTATAATAAGGAACACTGTGATTCCTTTGAATTTTGTGG-CTGGTCAGTGAGATATAAAAGATCCCACTGAAATTC----CTGTTTCATGTTATTGACTCTATTTAGCTTGAAACAGATATAATGCAATGATTCATTGC-TTTACA-AGTAAAAATA--CATTGGCATG-ATAGGTCCCT-----TTA--------TAAATTATTGTTGGCATGTTCTTCAGAGATGGGGATCATAAGGAACAT-TTTTGTTCTATTTTGTTGGTAAGTCAAGATACCCAC-TGAATGTGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTAGAT--------------TTTCTCATACTCGAAAGCTGCTTTTTCTCACAATG-TATGTTGGAGATATTTTGCTTGATACATGGAGAAAAGAAACAAAGGATCAAGTTT-AATTTCTGTCCTACAGAAGCTTAAACAAGACAAATAAGAAACATGTATAGGAAAGAATTTAGCAACTATTTAGAGAATGGT----------GTGATTAGTGAACAAAATAACAATTATGTATTTAA-TCTGTACACTTCCAATGAAAGATGAAACaatactaatagttataattttttgagtgcttactatgtgtcaggaattttctgagtcctctataattgttatcttgtttatacttcacaagga-ttctgctatgtagacacaatttttctaaattctttacatccaaggtacttgaggcccagatagattgaagtcacACAGTCTGT s panTro4.chr17 66395830 1158 - 82630442 TTCTCTCTTTTGCTTTTTATACCCTGCTGAGAACCAATATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGTTG-TTTTTTAGTAAATTAGATAGTTGTGCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCAACATTTCCTTTTCCTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTGCTTCTTTCATCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGATTGGATTTCATAA--GTTAATTCTTTATTT----ATTTGACTCCTGGATAATAAGTTGAAAATAGATTTTATGATGACTAAATCTCCTCTGCTCTCAAAGGGGTTAAAAATAAATTGCATGGAATGCTGGTAGGAAAATGTGATGAAAGATTCATCTTTGGGGGGT-----GATAGGAGGTA---ACTTGTGTATAATAAGGAACACTGTGATTCCTTTGAATTTTGTGG-CTGGTCAGTGAGATATAAAAGATCCCACTGAAATTC----CTGCTTCATGTTATTGACTCTATTTAGCTTGAAACAGATATAATGCAATGATTCATTGC-TTTAAA-AGTAAAAATA--CATTGGCATG-ATAGGTCCCT-----TTA--------TAAATTATTGTTGGCATGTTCTTCAGAGATGTGGATCATAAGTAACAT-TTTTGTTCTATTTTGTTGGTAAGTCAAGATACCCAC-TGAATGTGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTAGAT--------------TTTCTCATACTCGAAAGCTGTTTTTTCTCACAATG-TATGTTGGAGATATTTTGCTTGATACATGGAGAAAAGAAACAAAGGATCAAGTTT-AATTTCTGTCCTACAGAAGCTTAAACAAGACAAATAAGAAACATGTATAGGAAAGAATTTAGCAACTATTTAGAGAATGGT----------GTGATTAGTGAACAAAATAACAATTATGTATTTAA-TCTGTACACTTCCAATGAAAGATGAAACaatactaatagttataattttttgagtgtttactatgtgtcaggaattttctgagtcctctataattgttatcttgtttatacttcacaagga-ttctactatgtagacacaatttttctaaattctttacatccaaggtacttgaggcccagatagattgaagtcacACAGTCTGT i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 10357 1157 + 2193130 CTCTCTCTTTTGCTTTTTATACCCTGCTGAGAGCTACTATGGCCATATGAATAA-------TCTTGTGGTTTGCACATTACTAACAGAGAATCAGTTG-TTTTTTAGTAAATTAGATAGTTGTGCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCACCATTTCCTTTTCCTGTCGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTCCTTCCTTCATCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGATTGGATTTCATAAGTGTTAGCTCTTTATTT----ATTTGACTCCTGGATAATAAGTTGAGAATAGATTTTATGATGACTAA-----CTCTGCTCTCAAAGAGGTTAAAAATAAATTACATAGAATGCTGGTAGGAAAATGGGATGAAAGATTCATCTTTGGGGGGT-----GATGGGAGGCA---ACTTGTGTATAATGAGGAACACTGTGATTCCTTTGAATTTTGTGG-CTGGTCAGTGACATATAAAAGATCCCACTGAAATTG----CTGTTTCATGTTATTGAATCTATTCAGCTTGAAACAGATATAATGCAATGATTCATTGCTTTTAAA-AGTAAAAACA--TATTGGCATG-ATGGGTCCCT-----TTA--------TAAATTATTATTGGCATGTTCTTCAGAGATGTGGATCATATAGAATAT-TTCTGTTCTATTTTGTTGGTAAGTCAAGATACCCAG-TGAATGTGTTTAA--------------------------------------CTAAAGTGTTATTGAAAGTATAT--------------TTTCTCATAGTCAAAAGCTGTTTTCTCTCACAATG-TATGTTGGAGATATTTTGCTTGATACATGGAGAAAAGAAATAAAGGATCAAGCTTAAATTTCTGTCCTACAGACACTTAAACAAGACAAATAAGAAACATGTATAGGAAAGAGTTTAGCAACTATTTAGAGAATCCT----------GTGATTAGTGAACAAAATAACAATTATGTATTTAA-TCTGTACACTTCCAATGAAAGATGAAACAATACtaatagttataatttgttgagtgcttgctatgtgtcaggaattttctgagtcctctataattgttatcttgtttatacttcacaggca-ttctatgatgtagacacaatttttctgaattctttacatccaaggtacttgaggcccagatagattgaagtcacACAGTCTGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53231024 1153 + 80904711 CTCTCTCTTTTGCTTTTTATACCCTGCTGAGAGCTACTATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGCTC-TTTTTCAGTAAATTAGATAGTTGTGCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCACCATTTCCTTTTCCTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTCCTTCCTTCATCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGATTGGATTCCATAAGTGTTAATTCTTTATTT----ATTTGACTCCTGGATAATAAGTTGAGAATAGATTTTATGATGACTAAATCTCCTCTGCTCTCAAAGAGGTTAAAAATAAATCACATAGAATGTGGGCAGGAAAATGGGATGAAAGA------TTTATGGGGT-----GATGGGAGGTA---ACTTTTGTATAATGAGGAACACTGTGATTCCTTTGAATTTTGTGA-CTAGTCAGTGAGATGGAAAAGATCCCACTGAGATTCCTGTCTGTTTCATGTTATTGAATCTATTCAGCTTGAAACAGATATACTGCAATGATTCATTGCTTTTAAA-AGTAAAAACA--CGTCAGCATG-ATGGGTCCCT-----TTA--------TAAATTATTATTGGCATGTTCTTCAAAGATGTGGATCATAGGGAACAT-TTCTGTTCTATTTTGTTGGTAAGTCAAGATACCCAA-TGAATATGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTATAT--------------TTTCTCGTACTCAAAAGCTGTTTTCTCTCACAATG-TATGTTGGAGATATTTTGCCTGATACACGGAGAAATGAA-------ATCAAGCTTTAATTTCTGTCCTACAGATGCTTAAACAAGACAAATAAGAAACATGTATAGGAAAGGGTTTAGCAACGATTTAGAGAATTGT----------GTGATTAGTGAACAAAATAACAATTACGTATTTAA-TCTGTGCACTCCCAGTGAAAGATGAAACAATACTAATAGTTCTAatttgttgagtgcttactacgtgtcaggaattttctgagtcctctataattgttatcttgcttatacttcacaagga-ttctatgatgtagacacactttttctgaattctttacctccaaggtacttgaggcccagatagattgaagtcacACGGTCTAT i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52795893 1153 + 80997621 CTCTCTCTTTTGCTTTTTATACCCTGCTGAGAGCTACTATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGCTC-TTTTTCAGTAAATTAGATAGTTGTGCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCACCATTTCCTTTTCCTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTGCTTCCTTCATCTGATGTGTCTTCTGATGTGTGGACCCATTACATGACATTGTTTGATTGGATTCCATAAGTGTTAATTCTTTATTT----ATTTGACTCCTGGATAATAAGTTGAGAATAGATTTTATGATGACTAAATCTCCTCTGCTCTCAAAGAGGTTAAAAATAAATCACATAGAATGTGGGCAGGAAAATGGGATGAAAGA------TTTGGGGGGT-----GATGGGAGGTA---ACTTTTGTATAATGAGGAACACTGTGATTCCTTTGAATTTTGTGA-CTAGTCAGTGAGATGGAAAAGATCCCACTGAGATTCCTGTCTGTTTCATGTTATTGAATCTATTCAGCTTGAAACAGATATACTGCAATGATTCATTGCTTTTAAA-AGTAAAAACA--CGTCAGCATG-ATGGGTCCCT-----TTA--------TAAATTATTATTGGCATGTTCTTCAAAGATGTGGATCATAGGGAACAT-TTCTGTTCTATTTTGTTGGTAAGTCAAGATACCCAA-TGAATATGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTATAT--------------TTTTTCGTACTCAAAAGCTGTTTTCTCTCACAATG-TATGTTGGAGATATTTTGCCTGATACACGGAGAAATGAA-------ATCAAGCTTTAATTTCTGTCCTACAGATGCTTAAACAAGACAAATAAGAAACATGTATAGGAAAGGGTTTAGCAACGATTTAGAGAATTGT----------GTGATTAGTGAACAAAATAACAATTACGTATTTAA-TCTGTGCACTCCCAGTGAAAGATGAAACAATACTAATAGTTCTAatttgttgagtgcttactacgtgtcaggaattttctgagtcctctataattgttatcttgcttatacttcacaagga-ttctatgatgtagacacactttttctgaattctttacctccaaggtacttgaggcccagatagattgaagtcacACGGTCTAT i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47800894 1153 + 74645514 ctctctcttttgctttttataCCCTGCTGAGAGCTACTATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGCTC-TTTTTCAGTAAATTAGATAGTTGTGCTTATCtggtaaatatttctataaatagaaAAGGCACCATTTCCTTTTCGTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGctctcattctccttccttcaTCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGATTGAATTCCATAAGTgttaattctttattt----atttgactcCTGGATAATAAGTTGAGAATAGATTTTATGATGACTAAATCTCCTCTGCTCTCAAAGaggttaaaaataaatcacatagaATGTGGGTAGGAAAATGGGATGAAAGG------TTTGGGGGGT-----GATGGGAGGTA---GCTTTTGTATAATGAGGAACACTGTGATTCCTTTGAATTTTGTGA-CTAGTCAGTGAGATGGAAAAGATCCCACTGAGATTCCTGTCTGTTTCATGTTATTGAATCTATTCAGCTTGAAACAGATATACTGCAATGATTCattgcttttaaa-agtaaaaaca--cgTCAGCATG-ATGGGtccct-----tta--------taaattattattggcATGTTCTTCAAAGATGTGGATCATAGGGAACAT-TTCTGTTCTATTTTGTTGGTAAGTCAAGATACCCAA-TGAATATGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTATAT--------------TTTCTCGTACTCAAAAGCTGTTTTCTCTCACAATG-TATGTTGGAGATATTTTGCCTGATacacagagaaatgaa-------atcaaGCTTTAATTTCTGTCCTACAGATGCTTAAACAAGACAAATAAGAAACATGTATAGGAAAGGGTTTAGCAACTATTTAGAGAATTGT----------GTGATTAGTGAACAAAATAACAATTACGTATTTAA-TCTGTGCACTCCCAGTGAAAGATGAAACAATACTAATGGTTCTAAGTTGTTGAGTGCTTACTACCTGTCAGGAATTTTCTGAGTCCTCTATAATTGTTATCTTGTTTATACTTCACAAGGA-TTCTATGATGTAGACACACTTTTTCTGAATTCTTTACCTCCAAGGTACTTGAGGCCCAGATAGATTGAAGTCACACGGTCTAT i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10063467 1152 - 75148670 CTCTCTCTTTTGC-TTTTATACCCTGCTAAGAGCTACTATGACCATGTGAATAA-------TCTTGTGGTTTGCACATTACTAATAGAGAATCAGCTC-TTTTTCAGTAAATTAGATAGTTGTGCTTATCTGGTAAATATTTCTATAAATAGAAAAGGCACCATTTCCTTTTCCTGTTGTATTCTGAGCTATCCAATTTGGTTAAG-CCAAGTGAATCAGCTCTCATTCTCCTTCCTTCATCTGATGTGTCTTCTGATGTGTAGACCCATTACATGACATTGTTTGATTGGACTCCATAAGTGTTAATTCTTTATTT----ATTTGACTCCTGGATCATAAGTTGAGAATAGATTTTATAATGACTAAATCTCCTCCGCTCTCAAAGAGGTTAAAAATAAATCACATAGAATGTGGGTAGGAAAATGGGATGAAAGA------TTTGGGGGGT-----GATGGGAGGTA---ACTTTTGTATAATAAGGAACACTGTGATTGCTTTGAATTTTGTGA-CTAGTCAGTGAGATGGAAAAGATCCCACTGAGATTCCTGTCTGTTTCATGTTATTGAATCTATTCAGCTTGAAATAGATATACTGCAATGATTCATTGCTTTTAAA-AGTAAAAACA--CATCAGCATG-ATGGGTCCCT-----TTA--------TAAATTATTATTGGCATGTTCTTCAAAGATGTGGATCATAGGGAACAT-TTCTGTTCTATTTTGTTGGTAAGTCAAGATACCCAA-TGAATATGTTTAA--------------------------------------CTGAAGTGTTATTGAAAGTATAT--------------TTTCTCATACTCAAAAGCTGTTTTCTCTCACAATG-TATGTTGGAGATATTTTGCCTGATACATGGAGAAAAGAA-------ATCAAGCTTTAATTTCTGTCCTACAGATGCTTAAACAAGACAAATAAGAAGCATGTATAGGAAAGGGTTTAGCAACTATTTAGAGAATTGT----------GTGATTAGTGAACAAAATAACAATTACGTATTTAA-TCTGTGCACTCCCAGTGAAAGATGAAACAATACTAATAGTTCTAatttgttgagtgcttattatgtgtcaggaattttctgagtcctctataattgttatcttgtttatacttcacaagga-ttctatgatgtagacacaatttttctgaattctttacctccaaggtacttgaggaccagatagattgaagtCATACAGTCTAT i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112956022 1129 + 159171411 CTCTCTCTTTTGCTTTTTATACCCTGCTGAGGGCTACTATGACCATGTGAATAA-------TCTTGTTGTTTACACATTACTAATAGAGAATCAGTTCTTTTTTTAGTAAATTAGATAGTTGTGCTTATCTGGTAAATGTTTCTATAAATAGAAAAGGCACCATTTCCTTTTCCTGTTGTATTATGAGCTATCCAATTTGGTTATG-CCAAGTGAATCAGCTTTCACCCT--------------ATGTGTCTTCAGATGTGTAGACACA-------ACATTGTGTTATTGGATTTCATAAGTGTTAATTCTTTATTT----ATTTGACTCCGGGATAACAGGTTGAGAATAGATTTTATGATAACGAAATCTCCTCTGCTCTCAAAGAGGTTAAACATAAATTACATGGAATGCTGGTAGGAAAATGGGATGAAAGATTCATCTTTGGGGGGT-----GATGGGAGG--------TGTGTAAAAAGAGGAACACTGTGATTCCTTTGTATTTTGTGGCCTGGCCAGTG--ATATAAAAGATCCCACTGAAATTCCTGTGTGTTT--TGTTATTGAATCTATTCAGCTTGAAACAGATATAATGCAATGATTCATTGCTTTTAAA-AGTAAGAACA--CATTGGCATG-ATGGGTCCCT-----TTA--------TAAATTATTATTGACATGTTCTTCAGAGATGTGGACCATAGTGAACAT-TTTTGTTCTATTTTGTTGGTAAGTCA--ATACCCAA-CGAATGTGTTTAA--------------------------------------CTGAAGTGTTATTGATAGCATAT--------------TTTCTCATACTTGAAAGCTGTTTTCTCTCACAATA-TATGTTGGAGATATTTTGCTTGATACACAGAGAAGCAAA-----GGGTCAAGCTTTAATTTTTGTCCTATGGACACTTAAACAAGACAAATAAGAA-CATGTATAGAAAGGAGTTTAACAACTATTTAGAGAATTGT----------GTGATTAGTGAACAAGATAACAATTATA-ATTTAA-TCTGTACACTTCCAGTGAAAGATGAAACAATACtaatagttataatttgttgagtgcttactatgtgtcaggaattttctgagtcctctataattgttatcttgtttatacctcacaagga-ttctatgaggtagacacactttttctgaattctttacatccaagatacttgaggcccagatagattgaagtcacatgGTCTAT i calJac3.chr5 C 0 C 0 s mm10.chr11 99635092 1134 + 122082543 TGCTGTCTCCTGCTTTTTATACCCTGCTGAGGGTCAC-ATGAC------------------TCTT---GTTTATAC------TATGGAAGATCAGTTA-GTT-----TGAGTTAATTAGTTGTGT--------------TATCTATATATAGAAAAAGC--TGCTTCCTTTTCCTGCTATATTCCAAGCTATCCAATTTGGCAAAGCCCAAGAGAATCAACTTTCCTTTTCTCACTTTGATAT--TATATCCCCTAA--AGTAGACACAGTCCATGAC-TTGTCTCTTTGGGT----TGAGTGTTCATTGCTTATTTCTG-GTCTTATCCTGGGGAAATATGTTCAGAATGGACTTTATGGTGATTGTAT---CTCTGGCCACAAC-AGGTTAGAACTGGGTCTTTAGAGATACAAGTGGGAAAACAGGATGAAATACTGTTATTTTGGGAGTGTGAAGGCGGGTGGAA---GCTTGTAATCAACAAAGAATACTGT-----------ATTTCTCAA-ATAGTC--TAGTTTAGGGAGGGTCCTAG------------CAGTTTTGTCTTATTTAATCTCTCAAAGGTAAAACA---ATCTTGCAGTGA-TAATTACTTTTGAATAGCAAAAGCA--TGTTGGCATG-ATGGGTCCttaaaaatta-------ttaaatttttaGTTTTATGTTCATCAGAG-TGGGAAGAGTTAAAGGCATATTTTGATCAGCCTT-TTGGTAAGTCAACAAGCCTAG-TGAATATGTACAAGTAatgatcttaatatattgtctacatgcatgaaattcctaaagaataaaTGAAAATAATTTAAAAAGCTGTGTCTTGTTCATATTCT-GAGTTATTTTTCTCAATAATG-TATATTGGAGAAGTTTT---TGCTTCAGATAAGACACAG-------ATAAAGTCATAAGCATTCTTTTGCAGAT-----AACTAAGGGAACATGATACGTACATGGTAAAGAGCTTGTCAGATTTTCCAAGGGTTGTTGGAAATCACATGCTTAATAAAGTCAATAA-AATCATGTGTTTAAGTCAGTGCATTCCCAGTTGGCAGTGAGATAATTCTGATAGTTAAAATTGGTTGAATACCTACTGTGTGCCTGGCATTTTTGGAGTCCTCTGTAATTGTTGTCTTATTTACATTTCTCGAGGA-CTCTGTGAAATGGGTGCAATTCTTGTTAATTCCTTAC---------ACTACGGTCCTAAATGGACTGAAGGGACATAGCCAGT i mm10.chr11 C 0 N 0 s canFam3.chr9 39469879 1126 - 61074082 TGCCATCTGTCAC-TTTTATACCCTGCTGAGGGCCACTAGGACCATGGGCAGGACAACTCTTCTTGTTGTTTA-----TCCTAATAGAAAATCATGTA-GTTTT-AGTAAATTAGATAATTATGTTTATCTGGTAAATATACCTATATATAGAAAAGGCTCCATTTCCTTCTCCTGTTGTATTGTGAGCTATCTGATTTGGTTAAAACCAAGTGAATCAGCTTCCATATTTTTTTCCTTGTCTGATGTGTCTTCCAAAGTACACTCTCCT---ATGACATTATTTCTTTGGATTTTACAAGTGTTAAATCCTCATTTATGTATTTAACTCCAGGATAATATGTTGAGAATGGATTTTATGTCAACTAAATCTTCT-----AGCCAAGAGGTTAA---CAAGTCATATGAAAGGCTGGTAGGAAAATAGGGTGAAAGAGCCAT-CTTGGGGGGC-----GGGGGCGGGCAATCACTTATGTTCAGTGGGGAATACTGTGATTCCTTTGGATTTTATGA--TGGTCAGTGAGGTATAAAAAATCCTAGCAAAGTACCTATCTCTTTTGTCTTATTGAATCTATTCGATTTGAA--AGTTATAATGTAATGATTCACTACTTTTACACAGTAAAAAAACTCATTGGCATGAATAGGTTCtt-----ttaaaaattattaaattattatGAACATGTTCTTCAGAGA-GGGTATCATAAAGGA-GT-GTTTTTTCTCTTATTTTGGTAGATGAATATACCCAATTGAATATGTGTGT--------------------------------------------------TGAATATTTAT--------------ATTCT---------GAGCTTTTGTCTCTCAAAAAGTTATGTTTGAGGTATTTTGCTTGATATAAATGAGATCTAA----GGAGTTAAGCTTTAATTTGTGTCCTATAGGCACTTCAATAAGACAAAGAACACATATGT------AGGGGTTTGGAAAGCATGTAGAACATTGT----------GTGAT---------AAATAACAATTATGTATTTAAATGTATACACTT---ATGAAATATGAGATAATGCTAaaaattactattt-ttgagtgcctgttgtgtgtcaggaattttctgagtcttctgtaattgttaccttatttatacttcacaggggcttctaagaggtggtcaggatttttcttaattcttcagacatgaggtaactgaggcttagatagattgaAATCATGTAGTC--- i canFam3.chr9 T 27248 C 0 a score=107632.000000 s hg38.chr17_JH159146v1_alt 275071 37 + 278131 AACAGGGAAAGGGCGTCTCTCCTAGAGTGTTCAAGGA s panTro4.chr17 66396988 37 - 82630442 AATAGGGAAAGGGCGTCTCTCCTAGAGTGTTCAAGGA i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 11514 37 + 2193130 AATAGGGAAAGGGCGTCTCTCCTAGAGTGTTCAAGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53232177 37 + 80904711 AATAGGGAAAGTGCGTCTCTCCTAGAGTGTTCAAGGA i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52797046 37 + 80997621 AATAGGGAAAGTGCGTCTCTCCTAGAGTGTTCAAGGA i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47802047 37 + 74645514 AATAGGGAAAGTGCATCTCTCCTAGAGTGTTCAAGGA i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10064619 37 - 75148670 AACAGGGAAAGTGCGTCTCTCCTAGAGTGTTCAAGGA i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112957151 37 + 159171411 AATAGGGAAAGTACGTCTCTCCTAGAGTGTTCGAGGA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39471005 37 - 61074082 AATAAGGAAGATGGTTCTTTCCTAGAATATTCAAAGA i canFam3.chr9 C 0 I 879 a score=660084.000000 s hg38.chr17_JH159146v1_alt 275108 292 + 278131 ACATTTTGCGCATGAACATTTTGCAATTAAATCCCTCCTGATATTTAAAAACAATTATTTATAATTAAAAAGATGCAAGgtatgttctcactcctaagtgggagttgaacaatgagatcacatggacacagggaggggaacatcacacactggagcctgtc-gggggtgagggacaaggggagggagagcattaggacaaatacctgatgcatgtcgggcttaaaacccagatgacggattgataggtgcagcaaaccatcatggcatatgtataactatgtaacagacctgc s panTro4.chr17 66397025 292 - 82630442 ACGTTTTGTGCATGAACATTTTGCAATTAAATCCCTCCTGatatttaaaaacaattatttataattaaaaaCATGCAAGATatgttctcactcctaagtgggagttgaacaatgagatcacatggacacagggaggggaacatcacacactggagcctgtc-aggggtgacagacaaggggagggagagcattaggacaaatacctgatgcatgtcgggcttaaaacccagatgacggattgataggtgcagcaaaccatcatggcatatgtataactatgtaacagacctgc i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 11551 292 + 2193130 ACATTTTGCACATGAACATTTTGCAATTAAATCCCTCCTGATATTTAAAAACAATTATTTATAATTAAAAAGATGcacagtatgttctcattcctaagtgggagttgaacaatgagatcacatggacacagggaggggaacatcacacaccagagcctgtc-gggggtgagggacaaggggagggagagcgttaggacaaatacctgatgcatgtcaggcttaaaacccagatgacggactgataggtgcagaaaaccatcatggcatatgtataactgtgtaacaaacctgc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53232214 293 + 80904711 ACATTTTGCACATGCACATTTTGCAATTAAATCCCTGCTGGtatttaaaaacaattatttataattaaaaaGACGAATGgtatgttctcactcctaagtgggagttgaacaatgagagcacatggacacagggaagggaacatcacacaccggaacctgtcagggggtgggggacaaaggtagggagagcattaggacaaatacctaatgcatgcagggcttaaaacctagatgacggattgataggtgcggcataccatcatggcacatgtaaaactatgtaacaaacctgc i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52797083 293 + 80997621 ACATTTTGCACATGCACATTTTGCAATTAAATCCCTGCTGGTATTTAAAAACAATTATTTATAATTAAAAAGACGCATGgtatgttctcactcctaagtgggagttgaacaatgagagcacatggacacagggaagggaacatcacacaccggaacctgtcagggggtgggggacaaaggtagggagagcattaggacaaatacctaatgcatgcagggcttaaaacctagatgacggattgataggtgcggcataccatcatggcacatgtataactatgtaacaaacctgc i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47802084 293 + 74645514 ACATTTTGCACATGCACATTTTGCAATTAAATCCCTGCtggtatttaaaaacaattatttataattaaaaagacgCATggtatgttctcactcctaagtgggagttgaacaatgagagcacatggacacagggaggggaacatcacacaccggagcctgttggggggtgggggacaaaggtagggagagcattaggacaaatgcctaatgcatgcagggcttaaaacctagatgacggatTGATAGGTGCGGCataccatcatggcacatgtataactatgtaacaaacctgc i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10064656 293 - 75148670 ACATTTTGCACATGCACATTTTGCAATTAAATCCCTGCTGGTATTTAAAAACAATTATTTATAATTAAAAAGATGcacggtatgttctcactcctaagtgggagttgaacaatgagagcacatggacacagggaagggaacatcacacaccggaacctgtcagggggtggaggacaaaggtagggagagcagtaggacaaatacctaatgcatgcagggcttaaaaactagatgacggattgataggtgcagcaaaccaccatggcacatgtataactacgtaacaaacctgc i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112957188 283 + 159171411 ACATTTTGCACATATACATTTTACAATTAAATCCTTCCTGATATTTAAAAACAATTATTTGTAATTAAAAAGATGcatggtatgttctcactcataaatgggagttgaacaatgagaacacatggacacagggagggggatgtcacacactggagcc----------tcgaggacaaggggagggagagcactgggacaaatgtctgatgcatacagggcttaatacatagatgatgggttgataggtgcagcaaaccaccatggcacatgtataactatgcaacaaagctgc i calJac3.chr5 C 0 C 0 e canFam3.chr9 39471042 879 - 61074082 I a score=373062.000000 s hg38.chr17_JH159146v1_alt 275400 170 + 278131 atgttctgcacatgtatcccaaaacttaaagtaaaa---ttaaaaaaaaaaaaTGTATGGTAAGAAACCATCATAAACAAAGTAAAAACACAAATGACTAAATAAT--AAAAAAAGAACTAGCAATTAATATCACGGACAAAGGGTTAATAGTATATAAAAGACTTCTGAgactg s panTro4.chr17 66397317 170 - 82630442 atgttctgcacatgtatcccaaaacttaaagtaaaat--ttaaaaaaaaaaGATGCATGGTAAGAAACCATCATAAACAAAGTAAAAACACAAATGACTAAATAAT---AAAAAAGGACTAGCAATTAATATCACGGACAAAGGGTTAATAGTATATAAAAGACTTCTGAgactg i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 11843 172 + 2193130 atgttctgcacatgtatcccaaaacttaaagtaaaa---tttaaaaaaaaaGATGCATGGTAAGAAACCATCATAAACAAAGTAAAAACACAAATGACTAAATAATTTTAAAAAAAGACTAGCAATTTATATCACAGACAAAGGGTTAATAGTATATAAAAGAATTCTGAgactg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53232507 170 + 80904711 acattctgcacatgtattccagaacttaaagtaaaat--tttaaaaaaaaaGATGCATGATAAGAAACCATCATAAACAAGGTAAAAACACAAATGAGTAAATAAT---AAAAACAGACTCACAATATATATCACAGAAAAAGGGTTAATAATATGTAAAAGACTTCTGAgaccg i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52797376 170 + 80997621 acattctgcacatgtattccagaacttaaagtaaaat--ttaaaaaaaaaaGATGCATGATAAGAAACCATCATAAACAAGGTAAAAACACAAATGACTAAATAAT---AAAAACAGACTCACAATATATATCACAGAAAAAGGGTTAAtaatatataaaagacttctgagaccg i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47802377 170 + 74645514 acattctgcacatgtattccagaacttaaagtaaaaa--ttaaaaaaaaaagatgcatgatAAGAAACCATCATAAACAAGGTAAAAACACAAAtgactaaataat---aaaaacagactcACAATATATATCACAGAAAAAGggttaataatatataaaagacTTCTGagacca i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10064949 169 - 75148670 acattctgcacaagtattccagaacttaaagtaaaat--taaaaaaaaaaaaAAGCATGATAAGAAACCATCATAAACAAGGTAAAAACCCAAATGACTAAATAAT---AAAAACAGACTCACAATATATATCACAGACAAACGGTTAAtaatatat-aaaggcttctgagactg i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112957471 162 + 159171411 acgttctgcatatatatcccagaacttaaaTTTTTTT--T-------AAAAGATGTATGataagaaaccatcataaacaaagtaaaaaaacaaatgaccaaat-tt---gaaaaaagactcataatttatatcacaaacaaaggattaatagaataaaaaagacttctgagactg i calJac3.chr5 C 0 C 0 s canFam3.chr9 39471921 165 - 61074082 ACATTTTGCAATTAAATTCTGATAGTAAAAAGataattatttgtaataaaaaatgtattttaaaatatCACCAGAAACAAAGTAAAAAGACAAATGACT----------GCAAAAAACCTTGTAATTTATACCAAAGAGTCAATGActttaatatataaagcacttctaaaatta i canFam3.chr9 I 879 C 0 a score=540780.000000 s hg38.chr17_JH159146v1_alt 275570 278 + 278131 gacacggtggctcacacctgtaatcccagca-ctttgggatgccaaggcaggcggattgtttgaggttaggaatttgagaccaacttggttaacttggcaaaaccccatctctacc------aaaaaaacaaaaaaaagc--------aaaa---------------aaaaaaaaaaaatggcgaggtggcatgcatctgtggtctgtggtcccagctactcaggaagctaaggtgggaggattgcctgagcccaggaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggt s panTro4.chr17 66397487 286 - 82630442 gacacggtggctcacacctgtaatcccagca-ctttgggatgccaaggcaggcggattgtttgaggttaggaatttgagaccaacttggttaacttggcaaaaccccatctctacc------aaaaaaacacaaaaaagcaaaaaaaaaaaa---------------aaaaaaaaaaaaaggctaggtggcatgcatctgtggtctgtggtcccagctactcaggaagctaaggtgggaggattgcttgagcccaggaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggt i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 12015 282 + 2193130 gacacggtggctcacacctgtaatcccagca-ctttgggatgccaaggtaggcggattgtttgagcttaggaatttgagaccaacttggttaacttgccaaaaccccatctctaccaaaaaaaaaaaaacacaaaaaagc---aaaaaaaaa---------------aaaaaaaaaaaaaggcaaggtggcatgca-------tctgtggtcacagctactcaggaagctaaggtgagaggattgcttgagcccaggaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53232677 276 + 80904711 gacacggtggctcacacctgtaatcccagca-ctctgggatgccaaggtgggcggattacttgagtttaagagtttgagaccaacttggttaacttggtcaaaccccatctctaca------aaaaaaaaagaagaaaaa---aaaaaaaaa---------------gaagaaaaaaattggcgaggtggcatgca-------tctgtggtcccagctactcaggaagctgaggtgggaagattgcttgggtccaggaggtggaggttgcagtgagccaaaattgcaccactgccctccagtgtggat i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52797546 262 + 80997621 gacacggtggctcacacctgtaatcccagca-ctctgggatgccaaggtgggcggattacttgagtttaagagtttgagaccaacttggttaacttggtcaaaccccatctctac--------------------aaaaa---aaaaaaaaa---------------aaagaaaaaaattggcgaggtggcatgca-------tctgtggtcccagctactcaggaagctgaggtgggaagattgcttgggtccaggaggtggaggttgcagtgagccaaaattgcaccactgccctccagtgtggat i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47802547 291 + 74645514 gacacggtggctcacacctgtaatcccagca-ctctgggatgccaaggtgggcggattacttgagtttaagagtttgagaccaacttggttaacttggtaaaaccccatctctaca------aaaaaaaaaaaaaaaaaa---aaaaaaaaaaacccacaaaaaaagaaagaaaaaaattggcgaggtggcatgca-------tctgtggtcccagctactcaggaagctgaggtgggaagattgcttgggtccaggaggtggaggttgcagtgagccaaaattgcaccactgccctccagtgtgggt i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10065118 268 - 75148670 gacacggtggctcacacctgtaatcccagca-ttctgggatgccaaggcgggcggattacttgagtttaagagtttgagaccaacttggttaacttggtaaaaccccgtctctacc------aaaaa--------aaaac---acaaaaaaa---------------gaagaaaaaaattggcaaggtggcatgca-------tctgtggtcccggctactcaggaagctgaggtgggaagattgcttggacccaggaggtggaggttgcagtgagccaaaattgcaccactgccctccagtctgggt i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112957633 247 + 159171411 ggcacggtggctcacacctggaatcccaacatttttgagaggtcaaggcaggaggactgcttgagcatgggagtttgagaccaacctggccaatttggcaaaaccccatctctaca-----------------------------------a---------------aacaaaattagctggtgaggtagcacgca-------tctg----cccagctactaggaaagctggggcaggagactcacttgagcccaggaggcagaggttgcagtgagctgagattgcaccactgcacttcagcgtgggt i calJac3.chr5 C 0 C 0 e canFam3.chr9 39472086 0 - 61074082 C a score=1571936.000000 s hg38.chr17_JH159146v1_alt 275848 600 + 278131 gacagaA------------------------GAAGAAGAAAaaaa--ggcttctggaaataga-tagaaaacagaccaacagcctaatgggaaa-ataaaatgcaaatattttaccaccatataaatatactcaatctcatgcatagtaagagaaatgaaataatatggtacgatacttctcacctgttagattatcaaaaattcaaaatctgatagcattctctggaagtgagatgatgtgaaaataggcatgctcgtatttgtcttgtgaaggtttggcaataactagcagcattattctttgactcagctatcccaattccataaaatatctcaaagatactcaggtaaatatatg-aaagatattgcacaagacgattcataagagttctatttgggaaaaa--aactaaaaactacaacaaca-ctggatacaacccaggtgtcct----tcaatagggtactggtgtataaactgtggtgccttcccatgatggagtactatgca---gctgtcaaaaggaataaggagtgtctctataggctactataaattaatctccagtagatattgttaggagacgataaagcag-tggaggaaaatgtgtacaattgttctgcaacaa--tgttttaaaa s panTro4.chr17 66397773 600 - 82630442 gacagaA------------------------GAAGAAGAAAaaaa--ggcttctggaaataga-tagaaaacagaccaacagcctaatgggaaa-ataaaatgcaaatattttaccaccatataaatatactcaatctcatgcatagtaagagaaatgaaataatatggtatgatagttctcacctgttagattatcaaaaattcaaaatctgatagcattctctggaagtgagatgatgtgaaaatgggcatgctcgtatttgtcttgtgaaggtttggcaataactagcagcattattctttgactcagctatcccaattccataaaatatctcaaacatactcaggtaaatatatg-aaagatattgcacaagacgattcataacagttctatttgggaaaaa--aactaaaaactacaacaaca-ctggatacaacccaggtgtcct----tcaatagggtactggcgtataaactgtggtgccttcccacgatggagtactatgca---gctgtcaaaaggaataaggagtgtctctataggctactataaattaatctccagtagatattgttaggagacgataaagcag-tggagaaaaatgtgtacaattgttctacaacaa--tgttttaaaa i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 12297 600 + 2193130 gacagaA------------------------GAAGAAGAAAAAAA--GACTTCTGGAAATAGA-TAGAAAACAGACCAACAGCCTAATGGgaaa-ataaaatgcaaatattttaccaccatataaatatactcaatctcatgcataataagagaaatgaaataatatgatatgacacttctcacctgttggattatcaaaaattcaaaatctgacaacattctctggaagtgagatgatgtgaaaataggcatgctcatatttttcttgtgaaggtttggcaataactagcagcattattctttgactcagctatcccaattccataaaatatctcaaagatgcttgggtaaatatatg-aaagatattgcacaagatgattcataacagttctatttgggaaaaa--aactaaaaactacaacaaca-ctggatacaacccaggtgtcct----tcaatagggtactggtgaataaactgtggtgccttcccatgatggagtactatgca---gttgtcaaaaggaataaggagtgtctctataggctgctataaattaatctccagtagatattgttaggagacgataaagcag-tggagaaaaatgtgtacagttgttctacaacaa--tgttttaaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53232953 605 + 80904711 gacagaAG---------------------AAGAAGAAGGAAAaaa--gacttctgaaaataga-tagaaaacagaccaacagcctaatgggaaa-ataaaatgcaaatatttcaccaccatataaatatactcaatctcatgcattataagagaaatgagataatatggtatgacacttctcacctgttagattgtcaaaaatgcaaaatctgacagcattctctggaagtgagatgatgtgaaaataggcatgctcgcatttttcttgtgaaggtttggcaataactagcagacttattctttgactcagctatcccaattccataaaatatctcaaagatactcaggtaaatatatg-aaagatgttgcacaagatgattcataacagttctatttgggaaaac--aactaaaacctacaacaata-ctggatacaacccgggtgtcct----tcaatagggtactggtgaataaactgtgatgccttcccatggtggagtactatgca---gctgtcaaaaggaataaggagtgtctctataggctgctataaattaattgccagtagatattgttaagagacaataaagcag-tggagaaaaatgtgtacaattgttctacaacaatatgttttaaaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52797808 605 + 80997621 gacagaag---------------------aagaagaaggaaaaaa--gacttttgaaaataga-tagaaaacagaccaacagcctaatgggaaa-ataaaatgcaaatatttcaccaccatataaatatactcaatctcatgcattataagagaaatgagataatatggtatgacacttctcacctgttagattgtcaaaaatgcaaaatctgacagcattctctggaagtgagatgatgtgaaaataggcatgctcgcatttttcttgtgaaggtttggcaataactagcagacttattctttgactcagctatcccaattccataaaatatctcaaagatactcaggtaaatatatg-aaagatgttgcacaagatgattcataacagttctatttgggaaaac--aactaaaacctacaacaata-ctggatacaacccgggtgtcct----tcaatagggtactggtgaataaactgtgatgccttcccatggtggagtactatgca---gctgtcaaaaggaataaggagtgtctctataggctgctataaattaattgccagtagatattgttaagagacaataaagcag-tggagaaaaatgtgtacaattgttctacaacaatatgttttaaaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47802838 604 + 74645514 gacagaag---------------------acgaagaaggaaaaaa--gacttCTGAAAATAGA-TAGAAAACAGACCAACAGcctaatgggaaa-ataaaatgcaaatatttcaccACCATATAAATATAATCAATCTCATGCAttataagagaaatgaaataatatggtATGACACTTCTCACCTGTTAGATTGTCAAAAATGCAAAATCTGACAGCATTCTCTGAAAGTGAGATGATGTGAAAATAGGCATGCTCGCATTTTTCTTGTGAAGGTTTGGCAATAACTAGCAGACTTATTCTTTGACTCAGCTATCCCAATTCCATAAAATATCTCAAAGATACTCAGGTAAATATATG-AAAGATGTTGCACAAGATGATTCATAACAGTTCTATttgggaaaaa--aactaaaacctACAACAATA-CTGGATACAA-CCGGGTGTTCT----TCAATAGGGTACTGGTGAATAAACTGTGATGCCTTCCCATGgtggagtactatgca---gctgTCAAAAGGAATAAGGAGTGTCTCTATAGGCTGTTATAAATTAATTGCCAGTAGATATTGTTAAGAGACAATAAAGCAG-TGGAGAAAAATGTGTACAATTGTTCTACaacaatgtgttttaaaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10065386 601 - 75148670 gacagaa------------------------gaagaaggaaaaaa--gacttctgcaaataga-tagaaaacagaccaacagcctaatgggaaa-ataaaatgcaaatatttcaccaccatataaatatactcaatctcatgcattataagagaaaggaaataatatggtatgacacttctcacctgttagattgtcaaaaatgcaaaatctgacagcattctctggaagtgagatgatgtgaaaataggcgtgctcacatttttcttgtgaaggtttgacaataactagcagacttattctttgactcagctatcccaattccataaaatatctcaaagatactcaggtaaatatatg-aaagatgttgcacaagatgattcataacagttctatttgggaaaa---aactaaaacctacaacaata-ctgcatacaacccgggtgtcct----tcaatagggtactggtgaataaactgtgatgccttcccatggtggagtactatgca---gctgtcaaaaggaataagcagtgtctctataggctgctataaattaattgccagtagatattgttaaaagacaataaagcag-tggagaaaaatgtgtacagttgttctacaacaatatgttttaaaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112957880 636 + 159171411 gacagagtgagactctgtgtcaaaaaaacaagaagaaaaagaaaaatgacttctaaaaatagattagaaaacagaccaacagcctaatggaaaatttaaaatgcaaatattttaccaccataaaaatatactcaatttcatgcataataaaagaaatgaaatcatacggtatggcccttctcacctgttagattgtcaaaaattcaaaatctgacagcattctctgggagggagatgatgtgaaaataggcatgctcacattt-tctggtgagagcttggcagtaactagcagcgttattctttgactcagctttcccaattccataaaatatctcaaagatactcaggaaagtatgtg-aaaggtgttgtgtgagatgatttataacaggtctatttgggaaaaaacaaatgaaaactacaacaaca-ctggatacaacccgggtgtccttcaatcaatagggtactggtgaataaactgtggtgcctccccacgatggagtactatgcagctgctgtgaaaaggaataag-agtgcctctatacactgctacaaattaatctccaagagatattgttaagagacaataaagcag-tagagaataatgtgtacaa-tgttctacAACAATATGTCTGAAAA i calJac3.chr5 C 0 C 0 s canFam3.chr9 39472086 550 - 61074082 ---------------------------gactggagaagaagaaaa-------------------------------------cctaatggaaaa-ataagatgcacatctttcttcatcatataaagatgtccagtctcccacataggaatagaaatgaagttatacaggataccacttctcacctatgagactgtgaaaaactcataatttgactacattctttaatagtgagattatgtggaaatagtcatgctcatatctttcctatgaagatttgacaataattagtggcattattctttgactctgctatcccaattttataaattaacc--aaggtactcagacaaaattatgaaaagatgttatgcaaaattattcatggcaatgctatttgtaaatac--a----------acaacaagagctagacacaacctaggtgtcct----tcagtaggatagtggtgaataagctatggtacatccccatgatggagttctattca---gctataaaaaggaataaggaatatctctatatgccactatgaagtaatcaccaggatatattattaaaagatgataaaacagatggaataaagtgcctatag-tgttctacAA-----TGTGTCAAAA i canFam3.chr9 C 0 N 0 a score=2185820.000000 s hg38.chr17_JH159146v1_alt 276448 1019 + 278131 atccaggatataaatattgaaagtatatttgcttacactttaaaaaacgacagaagaatagagagagaggagatgagaaaacaggaaagagggacttctgtcaaaacatcaaattgtgcattttaagtacatgcagtttatttattatatgtcaattgtaatttaatgtagctgaaaaaaaaagaaaaaaataatgga-------------------------------------------------------agaatcaaccacattt----ggttttgttgttgttgttgttgttgttgttgttgtttgagacggagtctcacgttgtcacccaggctggagtgcagtggagcgatcttggctcactgcaacttccacctcctgtgttcaag----caattctctgcctcagcctcctgagtaactgggattacaggcgcccaccaccacacccagttaatttttgtatttttaatagacatggggtttcaccatcttggccaggctggtcttgaacacctgacctcatgattc-cctgcctcagcctcgcaaaagtgctgagattacaggcgtgagccaccgcacccagcccatgtttgttttttaaaaattgacccatagaggatggagggaatagaatagagaagatagaaacagacactagat-tatttttgaatgtatctttttctgtagcttggactttgcacccatgtaaatattttacatacttataaaaat---------------------------------------------------------attaaatttttaaaatctctcaaaatcactaaaacc-accaccacaacaatggaatctaactgtatatccaggcataacttcagagaaagtaactatcccaaggccaaaatgtttttttcaaaaacctgttaagtttgtttgcaataactacactgttgttattagtattggcaatattattccaagattgttgtgcaagcattaggtaataaagaaaatgagtaattacatcaaggaactgttatttttggcaaggaataaaagagattta--ggaaaaagatatgaggttaagtaaaaatcctgtaattatcagtagaaacgctgatgtactttatcttttaa s panTro4.chr17 66398373 1014 - 82630442 atccaggatataaatattgaaagtatatttgcttacactttaagaaacgacagaagaatagagagagaggagatgagaaaacaggaaagagggacttctgtcaaaacatcaaattgtgcattttaagtacatgcagtttatttattatatgtcaattgtaatttaatgtagctgaaaaacaaagaaaaaaataatgga-------------------------------------------------------agaatcaaccacattt----ggtt------ttgttgttattgttgttgttgttgtttgagatggagtctcactttgtcacccaggctggagtgcagtggagcgatcttggctcactgcaacctccacctcctgtgttcaag----caattctctgcctcagcctcctgagtaactgggattacaggcgcccaccaccacgcccggttaatttttgtatttttaatagacatggggtttcaccatcttggccaggctggtcttgaacacctgacctcatgattcacctgcctcagcctcgcaaaagtgctgagattacaggcgtgatccaccacacccagcccatgtttgttttttaaaaattgacccatagaggatggagggaatagaatagagaagatagaaacagacactagat-tatttttgaatgtatctttttctgtagcttggactttgcacccatgtaaatattttacatacttataaaaat---------------------------------------------------------attaaatttttaaaatctctcaaaatcactaaaacc-accaccacaacaatggaatctaactgtatatccaggcataacttcagagaaagtaactatcccaaggccaaaatgtttttttcaaaaacctgttaagtttgtttgcaataactacactgttgttattagtattggcaatattattccaagattgttgtgcaagcattatgtaataaagaaaatgagtaattacatcaaggaatggttatttttggcaaggaataaaagagattta--ggaaaaagatatgaggttaagtaaaaatcctgtaattatcagtagaaacgctgatgtactttatcttttaa i panTro4.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 12897 1001 + 2193130 atccaggatataaatatcgaaagtatatttgcttacactttaaaaaatcacagaagaatagaaagattggaaatgagaaaacaggaaagagggacttctgtcaaaacatcaaattgtgcattttaagtatatgcagtttatttattatatgtcaattgtaa--caatgtagctgaaaaacaaagaaaaaaataatgga-------------------------------------------------------agaatcaatcatattt----ggtt------ttgttgttgttgttgttgttgttgtttgagacggagtctcacttcgtcacccaggctggagtgcagtggtgcgatcttggctcactgcaacctccacctcctgtggtcaag----caattctctgcctcagcctcctgagtaactgggattacaggcgcccaccaccacgcccggttaatttttgcatttttagtagatacggggtttcactatcttggccaggctggtcttgaacacctgacctcatgatccacctgcctcagcctcgc-aaagtgctgagattacaggcgtgagccaccgcacccagcccatgtttgttttttaaaaattgacccatagaggatggagggaatagaatagagaagatagaaacagacactagat-tatttttgaatgtatctttttctgtagctttgactttgcacccatgtaaatattttacatacttataaaaat---------------------------------------------------------attaaattt----------taaaaatcactaaaacc-accaccacaacaatggaatctaactgtatatccaggcataacttcagagaaagtaactatcccaaggccaaaatgtttttttcaaaaacctgttaagtttgtttgcaataactatactgttgttattagtattggcaatattattccaagattgttgtgcaagcattatgtaacaaagaaaatgagtaattacatcgaggaactgttatttctggcaaggaagaaaagagattta--ggaaaaagatatgaggttaagtaaaaatcctgtaattatcagtagaaacgctgatgtactttatcttttaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac3.chr16 53233558 987 + 80904711 atccaggatataaatattgaaagcatatttgcttacactttaaaaaatgacagaagaatagagagagaggagatgagaaaacaggaaagagggacttctgtcaaaacatcaaactgtgcattttaag------------------tatatgtcaattgtaacttaatgtagctgaaaaacaaagaaaaaaataatgga-------------------------------------------------------agaatcaaccatattt----tgtt------------ttgttgttgttgttgttgtttgagacggagtctcactttgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaacctccacctcccgtgttcaag----caattctccacctcagcctcctgtgtaact-ggattacaggcgcccactaccacgcttggttaatttttgtatttttaatagagatggggtttcaccatcttggccagcctggtcttgaacacctgactttgtgatccacctacctcagcctcgc-aaagtgttgggattacaggcacgagccaccacacacggcctctatttgttttttaaaagttgacccatagaggatggagggaatagaacagagaagatagaaacagacactagat-tatttttgaatgtatcttttactgtagctttgactttgcacccatgtaaatatttcacatatttataaaaat---------------------------------------------------------attaaatttaaaaaatctctcaaaatcactaaaacc-accacagcaacaatggaatctgactgtatgtcctggcataacttcagagaaattaactatcccaaggccaaaatgtttttttcaaaaacctgttaagtttgtttgcaataactatactgttgttattagtattggcaatattattccaagattgttgtgcaagcattatgtaataaagaaaatgagtaattacaccaaggaactattatttttggcaaggaagaagagagatttg--gggaaaagatataaggttaagt-aaaatcctgtaattatcagtagaaacgctgatatactttattttttaa i rheMac3.chr16 C 0 C 0 s macFas5.chr16 52798413 990 + 80997621 atccaggatataaatattgaaagcatatttgcttacactttaaaaaaTGACagaagaatagagagagaggagatgagaaaacaggaaagaggGACTTCTGTCAAAACATCAAACTGTGCATTTTAAG------------------TATATGTCAATTGTAACTTAATGTAGCTGAAAAACAaagaaaaaaataatgga-------------------------------------------------------agaatcaaccatattt----tgtt---------ttgttgttgttgttgttgttgtttgagacggagtctcactttgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaacctccgcctcccgtgttcaag----caattctccacctcagcctcctgtgtaact-ggattacaggcgcccactaccacgcttggttaatttttgtatttttaatagagatggggtttcaccatcttggccagcctggtcttgaacacctgactttgtgatccacctacctcagcctcgc-aaagtgttgggattacaggcatgagccaccacacacggcctctatttgttttttaaaagttgacccatagaggatggagggaatagaacagagaagatagaaacagacactagat-tatttttgaatgtatcttttactgtagctttgactttgcacccatgtaaatatttcacatatttataaaaat---------------------------------------------------------attaaattttaaaaatctctcaaaatcactaaaacc-accacagcaacaatggaatctaactgtatgtcctggcataacttcagagaaattaactatcccaagGCCAAAATGTTTTTTTcaaaaacctgttaagtttgtttgcaataactatactgttgttattagtattggcaatattattccaagattgttgtgcaagcattatgtaataaagaaaatgagtaattacaccaaggaactattatttttggcaaggaagaagagagatttg--gggaaaagatatgaggttaagt-aaaatcctgtaattatcagtagaaacgctgatatactttattttttaa i macFas5.chr16 C 0 C 0 s papAnu2.chr16 47803442 1044 + 74645514 atccaggatATAAATATTGAAAGCATATTTgcttacactttaaaaaatgacagaagaatagagagagaggagatgagaaaacaggaaagagggACTTCTGTCAAAACATCAAACTGTGCATTTTAAG------------------TATATGTCAATTGTAACTTAATGtagctgaaaaacaaagaaaaaaataatgga-------------------------------------------------------agaatcaaccatattt----tgtt------------ttgttgttgttgttgttgtttgagacggagtctcactttgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaacctccacctcccgtgttcaag----caattctccacctcagcctcctgtgtaact-ggattacaggcgcccactaccacgcttggttaatttttgtatttttaatagagatggggtttcaccatcttggccagcctggtcttgaacacctgactttgtgatccacctgcctcagcctcgc-aaagtgttgggattacaggcatgagccaccgcacacggcctctatttgttttttaaaagttgaccCATAGAGGATGGAGGGAATAGAACAGAGAAGATAGAAACAGACACTAGAT-TATTTTTGAATGTATCTTTTACTGTAGCTTTGACTTTGCACCCatataaatatttcacatatttataaaaatattaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattaaattttaaaaatctctcaaaatcactaaaaCCAACCACAGCAACAATGGAATCTAACTGTATGTCCAGGCATAACTTCAGAGAAATTAACTATCCCAAGGCc-aaatgtttttttcaaaaacCTGTTAAGTTTGTTTGCAATAACTATACTGTTGTTATTAGTATTGGCAATATTATTCCAAGATTGTTGTGCAAGCATTatgtaataaagaaaatgagtaatTACACCAAGGAACTATTATTTTTGGCAAGGAAGAAGAGAGATTTG--GGAAAAAGATATGAGGTTAAGT-AAAATCCTGTAATTATCAGTAGAAACGctgatatactttattttttaa i papAnu2.chr16 C 0 C 0 s chlSab2.chr16 10065987 989 - 75148670 atccaggatataaatattgaaagcatatttgcttacactttaaaaaaTGACagaagaatagagagagaggagatgagaaaacaggaaagaggGACTTCTGTCAAAACATCAAACTGTGCATTTTAAG------------------TATATATCAATTGTAACTTAATGTAGCTGAAAAACAaagaaaaaaataatgga-------------------------------------------------------agaatcaaccatattt----ggtt---------ttgttgtttttgttgttgttgtttgagatggagtctcactttgtcacccaggctggagtgcagtggtgcgatctcggctcactgcaacctccacctcccgtgttcaag----caattctccacctcagcctcctgtgtaact-ggattacaggcgccctccacgacgcttggttaatttttgtatttttaatagagccggggtttcaccatcttggccagcctggtcttgaacacctgacttcgtgatccacctgcctccgcctcac-aaagtgttgggattacaggcatgagccaccgcacccgacctatatttgttttttaaaagttgacccatagaggatggagggaatagaacagagaagatagaaacagacactagat-tatttttgaatgtatctttttctgtagctttgactttgcactcatgtaaatatttcacatatttataaaaat---------------------------------------------------------attaaattataaaaatctctcaaaatcactaaaacc-accacagcaacaatggaatctaactgtatgtccaggcataacttcagagaaattaactatcccaaggccaaaatgttttcttcaaaaacctgttaagtttgtttgcaataactatactgttgttattagtattggcaatattattccaagattgttgtgcaagcattatggaataaagaaaatgagtaattataccaaggaactattatttttggcaaggaagaaaagagatttg--ggaaaaagatatgaggttaagt-aaaatcctgtaattatcagtagaaacgctgatatacttt-ttttttaa i chlSab2.chr16 C 0 C 0 s calJac3.chr5 112958516 1052 + 159171411 CTCTAGGATATAAATATCAAAAATATATTTGCTTACACTTTTA-AAATGGTAGAAGAATAGAGAGA--AGAGATTTTAAAAAAGGAAAGAGGGACTTCtgtcaaaatatcaaatt-tgcattttaagtatatgcagtttat----tatatgcc-attgtaacttaatgtagctgaaaaaCAAAGAAAAAATTAACGGATATTTAACCGTTAATTAAATTAACGGTTTAATGGTTAATCGTTAATGGTTAATGGAAAATTAACCATATTTGTGGGGtt---------ttgttttgtttcattttgtt-tttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctccaccttccgggttcaagcctcccattctctgcctcagcctcccaaatagtg-----------cacccaccagcacgcccagctaatttttgtgtttttagtagagatggggtttcaccatgttggccaggctggtcgtggactcctgacctcatgatccatcctcctcagcctccc-aaagtgccaggattagaggcacgagccaccgcaactggccCGTATTTGCTTTTTAGAAATTGACCCATAGAGGGTGAAGAGAATAGAATAGAGAAGATAGAAATAGACACTAAATATTTTTTTGAATTTATCTTTTT-TATAGCTTTGACTTTGCACCTGTGtaaatattttacatatttataaaaat---------------------------------------------------------attaaaatttttaaatCTCTCAAAATCACTAAAACC-ACCATCGCAACAATGGAATATAACTGTATATCTGAGCATAACTTCAGAGAAAGTAACTATCCTAAGATCAAAATGTTTT-TTCAAAAACCAGTCAAGTCTGTTTGCAATAACTATATTGTTGTCTTTAGTATTGGCAATATTATTCC-AGATTGTTGTGCAAGCATTATGTAATAAATAAAATGAGTAATTACATCGAGGAACTGTTATTTTTGGCAAAGAAGAAAAGAGATTTGTAGGAAAAAGATATGAGGTTAAGTAAAAACCCTGTAATTCTCAGTAGAAATGCTCATGTACTTTATCTTTTAA i calJac3.chr5 C 0 N 0 a score=1127352.000000 s hg38.chr17_JH159146v1_alt 277467 664 + 278131 gcaaatattttctagttgtggacactgaaaaagttgagagaaaataatcaatttagtaatactcatcatttttacatttcaatctttcgtcccaaatgccatattcactacaa-ggaacaggggttccttggagaaatggctgaatataagtgtgggtaaggaaatatacaaatgaacctggaatatcttattatatatatattaaaaaaaatctactagattcacgtcaaaagtagccagagaccaacttgaagtttgttatttgagcaccaatggggatatgaactggaacccacaggttcatattgacaggagtt-------aaaaaaaat--actttggtcagctttgaatgatgttccattagcaagattaaccaagaaaag-ggagaaaaaatctaaataacctcactaagaaatgaaatgggagctattacaactgacaccacacaaatacaaaagatcattcaaggctactatgaacacctttatgcacataaactagaaaacctagaagagatggataaattcagggaaaaatacaaccctcttaacttaaatcgagaagaattagataccctgaacagaccaataacaaccagtgagattgaatggtaattaaaaaattaccaac-aaaaaaaagtccaggactaggcagattcacagcagaattc s panTro4.chr17 66399387 662 - 82630442 gcaaatattttctagttgtggacactgaaaaagttgagagaaaataatcaatttagtaatactcatcatttttacatttcaatctttcgtcccaaatgccatattcactacaa-ggaacaggggttccttggagaaatggctgaatataagtgtgggtaaggaaatatacaaatgaacctggaatatcttattatatatatat--aaaaaaatctactagattcacgtcaaaagtagccagagaccaacttgaagtttgttatttgagcaccaatggggatatgaactggaacccacaggttcatattgacaggagtt-------aaaaaaaat--actttggtcagctttgaatgatgTCccattagcaagattaaccaagaaaagaggagaaaaaatctaaataacctcactaagaaatgaaatgggagctattacaactgacaccacacaaatacaaaagatcgttcaaggctactatgaacacctttatgcacataaactag-aaacctagaagagatggataaattcagggaaaaatacaaccctcttaacttaaatcgagaagaattagataccctgaacagacaaataacaaccagtgagattgaatggtaattaaaaaattaccaac-aaaaaaaagtccaggactaggcagattcacagcagaattc i panTro4.chr17 C 0 N 0 s nomLeu3.chrUn_GL397460_1 13898 659 + 2193130 gtaaatattttctagttgtggacactgaaaaagtcgagagaaaataatcaatttagtagtactcatcatttttacatttcaatctttcgtcccaaatgccatattcactacaa-ggaacaggggttccttggagaaatggctgaatataagtgtgggtaaggaaatatacaaatgaacctggaatatcttattatataaaaaaacaaacaaatctactagattcacatcagaagtagccagagaccaacttgaagTTTGTTATTTGAGCACCAATGGGGATATGAACTGGAGCCC------TCATACTGACAGGAGTT--------AAAAAAAT--AATTTGGTCAGCTTTGAATGGTGTTccattagcaagattaaccaagaaaataagagaaaaaatctaaataacctcactaagaaatgaaatgggagctattacaactgacaccacacaaatacaaaagatgattcaaggccactataaacacctttatgcacataaactagaaaacctagaagagatggataaattcctggaaaaatacaaccctcctaacttagattgggaagaattagataccctgaacagaccaataacaaccagtgagattgaatggtaattaaaaaattaccaacaaaaaaaaagtccaggactagacagattcacagcagaattc i nomLeu3.chrUn_GL397460_1 C 0 N 0 s rheMac3.chr16 53234545 662 + 80904711 gt-aatattttctggttggggacactgaaaaagttgagagaaaataatcaatttagtaatactcatcatttttacatttcagtctttggtcccaaatgccatgttcactacaagggaacgggggttccttggagaaatggctgaatataagtgtgggtaaggaaatacacaaatgaacctggaatatcttattatatacaaaa-caaacaaatctactagattcacatcaaaagtagccagagaccaacttgaagTTTGTTATTTGAGCACCAATGGGGATATGAACTGGAACTCACAGGTTCATACTGACAGAAATT----TAAAAAAAAAAT--ACTTTGGTCAACTTTGAAtgatggtacattagcaagattaagcaagaaaagaggataaaaaatctaaataaactcactaagaattgaaacgga---tgttacaactgacaccacagaaatac-aaagatcattcaaggctactataaacacc-ctatgcatgtgaactagaaaacctagaagagatggatgaattcctgggaaaatacaaccctcctaacttcagttgggaagaattagctaccctgaacagaccaataacaaccagtgagattgaatggtaatttaaaaattaccaac-aaaagaaagtctaggaccagacagattcacagcagaattc i rheMac3.chr16 C 0 N 0 s macFas5.chr16 52799403 669 + 80997621 gt-aatattttctggttggggacactgaaaaagttgagagaaaataatcaatttagtaatactcatcatttttacatttcagtctttggtcccaaatgccatgttcactacaagggaacgggggttccttggagaaatggctgaatataagtgtgggtaaggaaatacacaaatgaacctggaatatcttattatatacaaaa-caaacaaatctactagattcacatcaaaagtagccagagaccaacttgaagTTTGTTATTTGAGCACCAATGGGGATATGAACTGGAACTCACAGGTTCATACTGACAGAAATT--AAAAAAAAAAAAAT--ACTTTGGTCAACTTTGAAtgatggtacattagcaagattaagcaagaaaagaggataaaaaatctaaataaactcactaagaattgagacgggagctattacaactgacaccactgaaatacaaaagattattcaaggctgctatgaacacctttgcacacacaaactagaaaacctagaagagatggatgaattcctgggaaaatacaaccctcctaacttaaattgggaagaattagctaccctgaacagaccaataacaaccagtgagattgaatggtaatttaaaaattaccaac-aaaagaaagtctaggaccagacagattcacagcagaattc i macFas5.chr16 C 0 N 0 s papAnu2.chr16 47804486 668 + 74645514 gt-aatattttctgGTTGGGGACACTGAAAAAGTTGagagaaaataatcaatttaGTAATACTCatcatttttacatttcagtctttggTCCCAAATGCCATATTCACTACAAGGGAACGGgggttccttggagaaatggctgaataTAAGTGTGGGTAAGGAAATACACAAATGAACCTGGAATATCTTAttatatacaaaa-caaacaaatctacTAGATTCACATCAAAAGTAGCCAGAGACCAACTTGAAGTTTGTTATTTGAGCACTAATGGGGATATGAACTGGAACTCACAGGTTCATAttgacagaaatt---aaaaaaaaaaaat--actttggtcAACTTTGAATGATGGTACATTAGCAAGATTAAGCAAGAAAAGAGgataaaaaatctaaataaactcACTAAGAATTGAAACGGGAgctattacaactgacaccactgaaatacaaaagatcattcaaggctgctatgaacacCTTTGCACacagaaactagaaaacctagaagagatggatgaattcctgggaaaatacaaccctcctaacTTAAATTGGGAAGAATTAgctaccctgaacagaccaataaccaCCAGTGAGATtgaatggtaatttaaaaattaccaac-aaaagaaagtctaggaccagacagattcacagcagaattc i papAnu2.chr16 C 0 N 0 s chlSab2.chr16 10066976 668 - 75148670 gt-aatattttctggttagggacactgaaaaagttgagggaaaataatcaatttagtaatactcatcatttttacatttcaatctttggtcccaaatgccatattcactacaa-agaacaggggttccttggagaaatggctgaatataagtgtgagtaaggaaatatacaaatggacctggaatatcttattatatacaaaa-caaacaaatctactagattcatgtcaaaagtagccagagaccaacttgcagTTTGTTATTTGAGCACCAATGGGGATACAAACTGGAACCCACAGGTTCATATTGACAGAAATTTAAAAAAAAAAAAAATAAACTTCGGTCAGTTTTGAAtgatggtccattaccaagattaaccaagaaaagaggataaaaaatctaaataaactcactaagaattgaaacaggagctattacaactgacaccactgaaatacaaaagatcattcaaggctgctatgaacacctttgcacacacaaactagaaaacctagaagagatggatgaattcctgggaaaatacaaccctcctaacttaaattgggaagaattagctaccctgaacagactaataacaaccagtgagac----tggtaatttaaaaattaccaac-aaaagaaagtccaggaccagacagatttacagcagaattc i chlSab2.chr16 C 0 N 0