##maf version=1 scoring=roast.v3.3 a score=77128.000000 s hg38.chr1_KI270759v1_alt 0 69 + 425601 gggaggccgaggcaggtggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaacccc s panTro4.chr1 224738738 69 + 228333871 gggaggccgaggcaggtggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaacccc i panTro4.chr1 N 0 C 0 s ponAbe2.chr1 226103710 69 - 229942017 gggaggctgaggcaggtggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaacccc i ponAbe2.chr1 N 0 C 0 s nomLeu3.chr5 139992757 69 - 143122389 gggaggccgaggcaggtggatcacgaggtcaggagattgagaccatcctggctaacatggtgaaacccc i nomLeu3.chr5 N 0 C 0 s macFas5.chr1 223472341 61 - 227556264 gggaggctgaggcgggtggatcacgatgttaggagatcgagaccatcccggctaacaccat-------- i macFas5.chr1 N 0 C 0 s papAnu2.chr1 16526175 61 - 220367699 gggaggctgaggcgggtggatcacgatgttaggagatcgagaccatcccagctaacaccgt-------- i papAnu2.chr1 N 0 C 0 a score=32148.000000 s hg38.chr1_KI270759v1_alt 69 17 + 425601 gtctctactaaaaatac s panTro4.chr1 224738807 17 + 228333871 gtctctactaaaaatac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226103779 17 - 229942017 gtctctactaaaaatac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139992826 17 - 143122389 gtctctacaaaaaatac i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223472402 17 - 227556264 gtctctactaaaaatac i macFas5.chr1 C 0 I 12 s papAnu2.chr1 16526236 17 - 220367699 gtctctactaaaaatac i papAnu2.chr1 C 0 I 8 s chlSab2.chr25 82323495 17 + 85787240 gtctctactaaaaatac i chlSab2.chr25 N 0 I 3 a score=360366.000000 s hg38.chr1_KI270759v1_alt 86 180 + 425601 aaaaaattagccgggtgtggtggcgggcgcctgtagtcccagctactcgggagactgaggcagaagaatggcttgaacccggtaggcagagc-tttagtgagccgagatcgcaccactgcactccagcctgggtgacagagcgagacgactcctc----------aaaaaaaaaaaaaaaaaaaaagaaaa s panTro4.chr1 224738824 180 + 228333871 aaaaaattagccgggtgtggtggcaggcgcctgtagtcacagctactcgggagactgaggcagaagaatggcttgaacccggtaggcagagc-tttagtgagccgagatcgcaccactgcactccagcctgggtgacagagcgagatgactcctc----------aaaaaaaaaaaaaaaaaaagagaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226103796 173 - 229942017 aaaaaattagccgggtgtggtggcgggcgcctgtagtcccagctactggggagactgaggcagaagaatggcttgaacctggtaggcggagcttttagtgagccgagatcgtgccactgcactccagcctgggcgacagagcgagacgactcctc----------aaaaaaaagaaaagaaaa-------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139992843 180 - 143122389 aaaaaattagccaggtgtggtggcgggcgcctgtagtcccagctactctggagactga-gcagaagaatggcttgaacccgggaggcagagcttttagtgagccgagatcgcgccactgcactccagcctgggggacagagcgagactcctcctc----------aaaaaaaaaaaaaaaaaaaaagaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16712608 183 - 229590362 aaaaaattagctgggcgaggtggc-ggcccctgtagtcccagctactcgggaggctgatgcaggagaatggcgtgaacccgggaggtggaggttgcagtgagctgagatcgcgccactgcactccagcctgggcaac--agcgagactccgtctc-----aaaaaaaaaaaaaaaggaaaaaagaaagaaa i rheMac3.chr1 N 0 C 0 s macFas5.chr1 223472431 184 - 227556264 aaaaaattagctgggcaaggtggc-ggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcgagactccgtctc------aaaaaaaaaaaaaaggaaaaaagaaagaaa i macFas5.chr1 I 12 C 0 s papAnu2.chr1 16526261 190 - 220367699 aaaaaattagctgggtgaggtggt-ggtgcctgtagtcccagctactcgggaggctgaggcaggagactggtgtgaacccgggaggtggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcaacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaggaaaaaagaaagaaa i papAnu2.chr1 I 8 C 0 s chlSab2.chr25 82323515 180 + 85787240 aaaaaattagccgggcgtggtggc-ggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaactgaggaggcggagcttgcagtgagcgaagattgcaccactgcactccagcctgggcaacagagcgagactccatctc----------aaaaaaaaaaagaaaaaagaaagaaa i chlSab2.chr25 I 3 C 0 a score=2661.000000 s hg38.chr1_KI270759v1_alt 266 2 + 425601 ga s nomLeu3.chr5 139993023 2 - 143122389 ga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16712791 2 - 229590362 ga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223472615 2 - 227556264 ga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16526451 2 - 220367699 ga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82323695 2 + 85787240 ca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13986817 2 - 49578535 ga i calJac3.chr19 N 0 C 0 e ponAbe2.chr1 226103969 0 - 229942017 C e panTro4.chr1 224739004 0 + 228333871 C a score=522286.000000 s hg38.chr1_KI270759v1_alt 268 164 + 425601 aaatgtgaaacgatatagcccctgtggaagagaacttggcactttctcagagagttaaacacaatgttatcatatgacccaacaattctacc--cttgtt---------------atgaaaaaacatgt--atccacaaaaccttgtacatgaatgtttatagcaacattattcataatagcc s panTro4.chr1 224739004 161 + 228333871 ---tgtgaaacgatatagcccctgtggaaaagaacttggcactttctcagagagttaaacacaatgttatcatatgacccaacaattctacc--cttgtt---------------atgaaaaaatatgt--atccacgaaaccttgtacatgaatgtttattgcaacattattcataatagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226103969 161 - 229942017 ---tgtgaaacgatacagcccctgtggaaaagaacttggcactttctcagagagttaaacacgatgttatcatatgacccaacagttctacc--cttgtt---------------atgaaaatatatgt--atccacaaaaccttgtacatgaaggttaatagcaacattattcataatagcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139993025 163 - 143122389 aaatgtgaaacgatacagcccctgtggaaaagaacttggcactttctcagagagttaaacac-atgttatcatatgacccaacaattctacc--cttgtt---------------atgaaaaaatacgt--atccacaaaaccttgtacgtgaatgtttatagcagcattattcataatagtc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16712793 179 - 229590362 aaatgtgaaacgatacagcccttgtggaaaggagcttggcattttctcagagagttaaacacggtgttatcatacgacccaacaattctagt--cttgttatgtacccaagggagatgaaaaaacatgt--atccacaaaaccttgtacatgaatgtttatagcaacatttttcatagtagcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223472617 179 - 227556264 aaatgtgaaacgatacagcccctgtggaaaggagcttggcattttctcagagagttaaacacagtgttatcatacgacccaacaattctagt--cttgttatgtacccaagggaaatgaaaaaacatgt--atccacaaaaccttgtacatgaatgtttatagcaacatttttcatagtagcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16526453 179 - 220367699 aaatgtgaaacgATACAGCCCCTGTGGAAAAGAGCTTGGCATTTTCTCAGAGAGTTAAACACAGTGTTATCATACGACCCAACAATTCTAGT--CTTGTTATGTActcaagggaaatgaaaaaacaTGT--ATCCACAAAaccttgtacatgaatgtttatagcaacatttTTCATAGTAGCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82323697 179 + 85787240 aaatgtgaaacgatacagcccctatggaaaagagcttggcactttctcagagagttaaacacagtgttatcatacgacccaacaactctagt--cttgttatgtacccaagggaaatgaaaaaacatat--atccacaaaaccttgtacatgaatgtttatagcaacatttttcatagtagcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13986819 176 - 49578535 aaatgtgaaatgatacagccactgtggga--gaacttggcactttctcagagagttaagcataatgttatcatatgacccaacagttctcca--cttgttatgcacccaagggaaatgaaaaaatatgt--atccacaaaagcttatccatgaatgtttatag-aacattattcatgatagcc i calJac3.chr19 C 0 C 0 s canFam3.chr7 36202032 181 + 80974532 agagatgagagagtgcagccactgtggaaga-agcttgacagatcctcaaaaaggtaaacccagagttattgtatgacccccgaattttcacatcttggcatatacccaagagaaatgaaaaaatatgtccactctcaaaagcttgtatatgaatattgacaatagcattactgataa-agcc i canFam3.chr7 N 0 C 0 a score=4992297.000000 s hg38.chr1_KI270759v1_alt 432 1414 + 425601 cccaaatagaaa--caacccaaatgtctatcaactgaagaatggataaacaaaatgtggcatgatctatataatggaatattacttggcagtgaaaaggaatgaagt-gtg-gttcattcattg----------------aaatattatggtaagtgaaagaacctagacacaaaagatgacatattgtatgattcctttgatataaagtgtctagaagaggcaaatctgtagatacagtatgtagattcctcattctcaggggctgaattgggac-gttgcag-ctaatgcatatggaatttatttta-----------ggagataatgaaaatgttctaaattcgatgatggttgcacaaccctgtaaatatactaaaaagcatagaattgtacaatataaatgg---------------atgaattatatt---------------tcaatagagctgttttaaaaaTATTGAAAA------CCAGAGATACCTGTCTGT-GCTCTAAAA-TGTATCCACTGCCTTCTAGATACAGTCTAAA---CTCTGCAGCTTGGCTTTTAAAGCCTTTTATTTATATGGAATCCT------------------CCCCACCCCCCACCATCTATACATTTGTAAACCTTACATGTTATTCAAATGCCATAATTCGTCAAACTGGATATGTTTTCTCCTTCCAGAAAGATATT-CCTTCATCCCTC--TTATAAGCCTtagcactgtctgccttgcgttatatttatttctgtatctgtcatatgatctc-----tatctgatcgagagctctttaaggccgggatgtcggcttgctcatattggcatccttcagga-cacctgacccctaaacttatctga--ttggtacgtgatacatttttatcactggatagaatgaatGGGTTGTGAAATT--ATTAGATGTGATCCCAGATAGGATACTG-TTTTTACTAATCTCTTTCACAAGGGTCTTTCAAGAACAATGCAGGATCAAACTTATAAAGAGATT--TT-TGAAACTCTCAAAACTCT----GTGCAGGGTATTATTATTATCTGTAATCCTGGTAACTATTCAAATTAGTGTCAATTAACTTTTGGCTGCACTCTTAAGATTCTTTATCATCTACATTAGTTTGTCA-GATGAGGTAATGCACTTTTTCTGGGTACAGTTGTCTTTGAAGAGATTGGCAGCGTTTCATAGTTGTAAACAAAACCGTCTCATATGCCGGACCGTGACAAAGAGGGACTAGGACGCCAGAAGCTCTGTGAAAACACTTAAATCCATTTCAGCGAGGAGGAATTGTGATCTGGTAAATAAATTAGTGTTCTGCTCTGTTCCTTGGCTCCTCTGCTAATGAATGGGCCCCAGAGATTTTTTTTTGTCTTGGGTGATAAGCCCCTAATATCTATTCAAGTTCAGCATAAAGCTCATTTTCTCTAGAAATCTTTGTTTAAAAACAGAA-TTTTTCCAGTAAATATAtttatcaaatt--aaaagtatttcagat s panTro4.chr1 224739165 1414 + 228333871 cccaaatagaaa--caacccaaatgtctatcaactgaagaatggataaacaaaatgtggcatgatctatataatggaatattacttggcagtgaaaaggaatgaagt-gtg-gttcattcattg----------------aaatattacggtaagtgaaagaacctagacacaaaagatgacatattgtatgattcctttcatataaagtgtctagaagaggcaaatctgtagatacagtatgtagattcctcattctcaggggctgaattgggac-gttgcag-ctaatgcatatggaatttatttta-----------ggagataatgaaaatgttctaaattcgatgatggttgcacaaccctctaaatatactaaaaagcatagaattgtacaatataaatgg---------------atgaattatatt---------------tcaatagagctgttttaaaaaTATTGAAAA------CCAGAGATACCTGTCTGT-GCTCTAAAA-TGTATCCACTGCCTTCTAGATACAGTCTAAA---CTCTGCAGCTTGGCTTTTAAAGCCTTTTATTTATATGGAATCCT------------------CCCCACCCCCCACCATCTATACGTTTGTAAACCTTACATGTTATTCAAATGCCATAATTCGCCAAACTGGATATGTTTTCTCCTTCCAGAAAGATATT-CCTTCATCCCTC--TTATAAGCCTtagcactgtctgccttgcgttatatttatttctgtatctgtcgtatgatctc-----tatctgatcgagagctctttaaggccgggatgtcagcttgctcatattggcatccttcagga-cacctgacccctaaacttatctga--ctggtacatgatacatttttatcactggatagaatgaatGGGTTGTGAAACT--ATTAGATGTGATCCCAGATAAGATACTG-TTTTTACTGATCTCTTTCACAAGGGTCTTTCAAGAACAATGCAGGATCAAACTTATAAAGAGATT--TT-TGAAACTCTCAAAACTCT----GTGCAGGGGATTATTATTATCTGTAATCCTGGTAACTATTCAAATTAGTGTCAATTAACTTTTGGCGGCACTCTTAAGATTCTTTATCATCTACATTAGTTTGTCA-GATGAGGTAATGCACTTTTTCTGGGTACAGTTGTCTTTGAAGAGATTGGCAGCGTTTCATAGTTGTAAACAAAACCGTCTCATATGCCGGACCGTGACAAAGAGGGACTAGGACGCCAGAAGCTCTGTGAAAACACTTAAATCCATTTCAGCGAGGAGGAATTGTGATCTGGTAAATAAATTAGTGTTCTGCTCTGTTCCTTGGCTCCTCTGCTAATGAATGGGCCCCAGAGATTTTTTTTTGTCCTGGGTGATAAGCCCCTAATATCTATTCAAGTTCAGCATAAAGCTCATTTTCTCTAGAAATCTTTGTTTAAAAACAGAA-TTTTTCCAGTAAATATAtttatcaaatt--aaaagtatttcagat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226104130 1414 - 229942017 cccaaatagaaa--caacccaaatgtctatcaactgaagaatggataaacaaaatgtggcatcatctatataatggaatattacttggcaatgaaaaggaatgaagt-gtg-gttcattcattg----------------aaacattatggtaagtgaaagaacccagacacaaaagatgacatattgtatgattccattgatataaagtgtctagaagaggcaaatctgtagatacagtatgtagattcctcattttcaggggctgaattgggat-gttgcag-ctaatgcatatggaatttatttta-----------ggagataatgaaaatgttctaaattcgatgatggttgcacaaccctgtaaatatactaaaaagcatagaattgtacaatttaaatgg---------------atgaattatatt---------------ccaatagagctgttttaaaaaTGTTGAAAA------CCACAGATACCTGCCTGT-GCTCCAAAA-TGTATCCACTCCCTTCTAGATACAGTCTAAA---CTCTGCAGCTTGGCTTTTAAAGCCTTTTATTTATATGGAATCCT------------------CCCCA-CCCCCACCATCTATACATTTGTAAACCTTACATGTTATTCAAATGCCATCATTTGTCAAACTGGATATGTTTTCTCCTTCCAGAAAGATATT-CCTTCATCCCTC--TTATAAGCCTTAGCACTGTCTGCcttgtgttatatttatttctgtatctgtcgtattatctc-----tatctgattgagagctctttaaggccgggatgtcggcttgctcatgttagcatccttcagga-cacctgacCCCTAAACTTATCTGA--CTGGTACATGATACATTTTTATCACTTGATAGAATGAATGGGTTGTGAAATT--ATTAGATGTGATCCCAGGTAGGATACTG-TTTGTACTGATCTCTTTCACAAGGGTCTTTCAAGAACAATGCAGGATCAAACTTATAAAGAGATT--TT-TGAAACTCTCAAAACTCT----GTGCAGGCTATTATTATGATCTGTAATCCTGGTAACTATTCAAATTAGTGTCAATTAACTTTTGGCGGCACTCTTAAGATTCCTTATCATCTACATTAGTTTGTCA-GATGAGGTAATGCACTTTTTCTGGGTACAGTTGTCTTTGAAGAGATTGGCAGCATTTCACAGTTGTAAACAAAACCGTCTCATATGCCGGACCGTGACAAAGAGGGACTAGGACGCCAGAAGCTCTGTGAAAACACTTAAATCCATTTCAGCGAGGAGGAATTGTGATCTGGTAAATAAATTAGTGTTCTGCCCTGTTCCTTAGCTCCTCTGCTAATGAATGGGCCCCAGAGATTTTTCTTTGTCCTGGGTGATAAGCCCCTAATATCTATTCAAGTTCAGCATAAAGCTCATTTTCTCTAGAAATCTTTGTTTAAAAACAAAATTTTTTCCAGTAAATATATTTATCAAATT--GAAAATATTTCAAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139993188 1408 - 143122389 cccaaatagaaa--caacccaaatgtctatcaactgaagaatggataaacaaaatatggcatgatctatataatggaatattacttggcaatgaaaaggaatgaagt-gtg-gttcattcattg----------------aaacattatggtaagtgaaagaacccagatacaaaagatgacatattgtatgattcctttgatataaagtgtctagaagaggcaaatctgtagatacagtatgtagattcctcattctcaggggctgaattgggac-attgcag-ctaatgcatatggaatttatttta-----------ggagataatgaaaatgttctaaattcgacgatggttgcacaaccctgtaaatatactaaaaggcatagaattgtacaatttaaatgg---------------atgaattatatt---------------tcaatagagctgttTTAACAATGTCGAAAA------CCACAGATACCTGTCTGC-GCTCTAAAA-TGTATCCACTGACTTCTAGATACAGTCTAAA---CTCTGCAGCTTTGCTTTTAAAGCCTTTTATTTACATGGAATCGT------------------CCCCACCCCCCACCATCTATACATTTGTAAACCTTACATGTTATTCAAATGCCGTAATTCGTCAAACTGGATATGTTTTCTCCTCCCAGAAAGATATT-CCTTCATCCCTC--TTATAAGCGTTAGCACTGTCTGCCTTGTGT----TTTATTtctgtatctgtcatattatctc-----tatctgatcGAGAGCTCTTTAAGGCC-GGATGTCAGCTTGCTCATGTTAGCATCCTTCAGGA-CACCTGACCCCTGAACTTATCTGACTCTGGTACATGATACATTTTTATCACTTGATAGAATGAATGGGTTGTGAAATT--ATTAGATGTGATCCCAGATAGGATACTG-TTTTTACTGATCTCTTTCACAAGGGTCTTTCAAGAACAATGCAGGATCGAACTTATAAAGAGATT--TG-TGAAACTCTCGTAA--CT----GTGCAGGGTATTATTATTATCTGTAACCCTGGTAACTATTCAAATTAGTGTCAATTAACTTTTGGCGGCACTCTTAAGATTCCTTATCATCTTCATTAGTTTGTCA-GATGAGGTAATGCACTTTTTCTGGGTACAGTTGTCTTTGAAGAGATTGGCAGCGTTTCATAGTTGTAAACAAAACCGTCTCATATGCCGGACCGTGACAAAGAGGGACTAGGACGCCAGAAGCTCTGTGAAAACACTTAAATCCATTTCAGCGAGGAGGAATTGTGATCTGGTAAATAAATTAGTGTTCTGCTCTGTTCCTTAGCTCGTCTGCTAATGAATGGGCGCGAGAGATTTTT-TTTGTCCTGGGTGATAAGCCCCTAATATCTATTCAAGTTCAGCATAAAGCTCATTTTCTCTAGAAATCTTTGTTTAAGAACAGAA-TTTTTCCAGTAAATATATTTATCAAATT--AAAAATATTTCAAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16712972 1411 - 229590362 cccaaatagaaa--caacctaaatgtctatcaactgaggaatgggtaaacaaaatgtggcatgatctatataatggaatattacttggcaatgaaaaggaatgaagt-gtg-gttcattcattg----------------aaacattatggtaagtgaaagaacccagacacaaaaggtgacagattgtatgattcctttgaaataaaatgtctaaaagaggcaaatctgtagatacagtatgtagattagtggttttcaggggctgaattgggacagttgcag-ctaatgcatatggaatttgttttagctggagatatggagataatgaaaatgttctaaaatcgatgatggtttcccaaccctgtaaatatactaaaaagcatagaattgtccaatttaaatgg---------------atgaattatatt---------------tcaatagaactgttttaaaGGTGTTGAAGA------CCACAGATACGTGTCTGT-GCTGTCAAA-TGTATCCACTGCCTTCTAGATACACTCTAAA---CTCTGCAGCTTGGCTTTCAAAGCCTTTTCTTTATATGGAATCCT------------------CCCCGCCCCCCACCATCTATACATTTGTAAACCTTACATGTTATTCAAATGCCATAATTCGTCAAACTGGATATGTCTTCTCCTTCCAGAAAGATACT-CCTTCATCCCTT--GTATAAGCCTTAGCACAGTCTGCcttgtgttatattcgtatctgtatctgtcatattatgtc-----tatctgatcgagagctctttaaggcctggatgtcggcttgctcatgttagcatccttcagga-cacctgacccctaatCTTATCTGA--CTGGTACATGATACATTTTTATCACTTGATAGAATGAATGGGTTGTGAAATT--ATTAGATGTGATCCCAGATAGGATACTG-TTTTCACTGA-------------GGTCTTTCAAGAACAATGCAGGATGAAACTTATAAAGACATT--TT-TGAAACTCTCAAAACTCT----GTGCAGGGTATTCCTATTATCTGTAACCCTGGTAGCTATTCAAGTTAGTGTCAATTAACTTTTGGCGGCACTCTTAAGATTCCTTATCATCCACGTTAGTTTGTCA-GATGAGGTAATGCACTTTTTCTGGGTACAGTTGTCTTTGAAGAGATTGGCAGCGTTTCATAGTTGTAAACAAAACCGTCTCATATGCCGGACCGTGACAAAGAGGGACTAGGACGCCAGAAGCTCTGTGAAAACACTTAAATCCATTTCAGCGAGGAGGAATTGCGATCTGGTAAATAAATTAGTGTTCTGCTCTGTTCCTTAGCTGCTCTGCTAATGAAT-GGCCCCAGAGATTTTT-TTTGTCCTGGGTGATAAGCCCCTAATATCTATTCAAGTTCAGCGTAAAGCTCATTTTCTCTAGAAATCTTTGTTTCAAAACAGAA-TTTTTCCAGTAAATATAtttatcaaatt--aaaaatacttcaaat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223472796 1411 - 227556264 cccaaatagaaa--caacctaaatgtctatcaactgaggaatgggtaaacaaaatgtggcatgatctatataatggaatattacttggcaatgaaaaggaatgaagt-gtg-gttcattcattg----------------aaacattatggtaagtgaaagaacccagacacaaaaggtgacagattgtatgattcctttgaaataaaatgtctaaaagaggcaaatctgtagatacagtatgtagattagtggttttcaggggctgaattgggacagttgcag-ctaatgcatatggaatttgttttagctggagatatggagataatgaaaatgttctaaaatcgatgatggtttcccaaccctgtaaatatactaaaaagcatagaattgtccaatttaaatgg---------------atgaattatatt---------------tcaatagaactgttttaaaGGTGTTGAAGA------CCACAGATACGTGTCTGT-GCTGTCAAA-TGTATCCACTGCCTTCTAGATACACTCTAAA---CTCTGCAGCTTGGCTTTCAAAGCCTTTTCTTTATATGGAATCCT------------------CCCCGCCCCCCACCATCTATACATTTGTAAACCTTACATGTTATTCAAATGCCATAATTCGTCAAACTGGATATGTCTTCTCCTTCCAGAAAGATACT-CCTTCATCCCTC--GTATAAGCCTTAGCACAGtctgccttgtgttatattcgtatctgtatctgtcatattatgtc-----tatctgatcGAGAGCTCTTTAAGGCCTGGATGTCGGCTTGCTCATGTTAGCATCCTTCAGGA-CACCTGACCCCTAATCTTATCTGA--CTGGTACATGATACATTTTTATCACTTGATAGAATGAATGGGTTGTGAAATT--ATTAGATGTGATCCCAGATAGGATACTG-TTTTCACTGA-------------GGTCTTTCAAGAACAATGCAGGATGAAACTTATAAAGACATT--TT-TGAAACTCTCAAAACTCT----GTGCAGGGTATTCCTATTATCTGTAACCCTGGTAGCTATTCAAGTTAGTGTCAATTAACTTTTGGCGGCACTCTTAAGATTCCTTATCATCCACATTAGTTTGTCA-GATGAGGTAATGCACTTTTTCTGGGTACAGTTGTCTTTGAAGAGATTGGCAGCGTTTCATAGTTGTAAACAAAACCGTCTCATATGCCGGACCGTGACAAAGAGGGACTAGGACGCCAGAAGCTCTGTGAAAACACTTAAATCCATTTCAGCGAGGAGGAATTGCGATCTGGTAAATAAATTAGTGTTCTGCTCTGTTCCTTAGCTGCTCTGCTAATGAAT-GGCCCCAGAGATTTTT-TTTGTCCTGGGTGATAAGCCCCTAATATCTATTCAAGTTCAGCGTAAAGCTCATTTTCTCTAGAAATCTTTGTTTAAAAACAGAA-TTTTTCCAGTAAATATAtttatcaaatt--aaaaatacttcaaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16526632 1411 - 220367699 CCCaaatagaaa--caacctaaatgtctatcaactgaggaatgggtaaacaaaatgtggcatgatctatataatggaatattacttggcaatgaaaaggaatgaagt-gtg-GTTCATTCATTg----------------aaacattatggtaagtgaaagaacccagacacaaaaggtgacatattgtatgattcctttgaaataaaatgtctaaAAGAGGCAAATCTGTAGATACAGTATGTAGATTAGTGGTTTTCAGGGGCTGAATTGGGACAGTTGCAG-CTAATGCATATGGAATTTGTTTTAGCTGGAGATATggagataatgaaaatgttctaaaatcgaTGATGATTTCCCAAccctgtaaatatactaaaaagcaTAGAATTGTCCaatttaaatgg---------------atgaattatatt---------------tcaatagaaCTGTTTTAAACGTGTTGAAGA------CCACAGATACGTGTCTGT-GCTGTCAAA-TGTATCCACTGCCTTCTAGATACACTCTAAA---CTCTGCAGCTTGGCTTTCAAAGTCTTTTCTTTATATGGAAtcct------------------ccccgccccccaccatCTATACATTTGTAAACCTTATATGTTATTCAAATGCCATAATTCGTCAAACTGGGTATGTCTTCTCCTTCCAGAAAGATACT-CCTTCATCCCTC--GTATAAGCCTTAGCACAGTCTGCCTTGTGTTATATTCGTATCTGTATCTGTCATATTATGTC-----TATCTGATCGAGAACTCTTTAAGGCCTGGATGTCGGCTTGCTCATGTTAGCATCCTTCAGGA-CACCTGACCCCTAATCTTATCTGA--CTGGTACATGATACATTTTTATCACTTGATAGAATGAATGGGTTGTGAAATT--ATTAGATGTGATCCCAGATAGGATACTG-TTTTTACTGA-------------GGTCTTTCAAGAACAATGCAGGATCAAACTGATAAAGACATT--TT-TGAAACTCTCAAAACTCT----GTGCAGGGTATTACTATTATCTGTAACCCTGGTAGCTATTCAAGTTAGTGTCAATTAACTTTTGGCGGCACTCTTAAGATTCCTTATCATCTACATTAGTTTGTCA-GATGAGGTAATGCACTTTTTCTGGGTACAGTTGTCTTTGAAGAGATTGGCAGCGTTTCATAGTTGTAAACAAAACCGTCTCATATGCCGGACCGTGACAAAGAGGGACTAGGACGCCAGAAGCTCTGTGAAAACACTTAAATCCATTTCAGCGAGGAGGAATTGCGATCTGGTAAATAAATTAGTGTTCTGCTCTGTTCCTTAGCTGCTCTGCTAATGAAT-GGCCCCAGAGAAtttt-tttGTCCTGGGTGATAAGCCCCTAATATCTATTCAAGTTCAGCGTAAAGCTCATTTTCTCTAGAAATCTttgtttaaaaacagaa-tttttccagtaaatatatttatcaaatt--aaaaatacttcaagT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82323876 1406 + 85787240 cccaaatagaaa--caacctaaatgtctatcaactgaagaatgggcaaacaaaatgtggcatgacctatataatggaatattacttggcaatgaaaaggaatgaagt-gtg-g----ttcattg----------------aaacattatggtaagtgaaagaacccagacacaaaaggtgacatactgtatgattccttcgaaataaaatgtctagaagaggcaaatctatagatacagtatgtagattagtggttttcaggggctgaattgggacagttgcag-ctaatgcatatggaatttgttttagctggagatatggagataatgaaaatgttctaaaatcgatgatggtttcccaaccctgtaaatatactaaaaagcatagaattgtccaatttaaatgg---------------atgaattatatT---------------TCAATAGAACTGTTTTAAAAGTGTTGAAGA------CCACAGATACGAGTCTGT-GCTGTCAAA-TGTATCCACTGCCTTCTAGATACACTCTAAA---CTCTGCAGCTTGGCTTTCAAAGCCTTTTATTTATATGGAATCCT------------------CCCCGCCCCCCACCATCTATACATTTGTAAACCTTACATGTTTTTCAGATGCCATAATTCGTCAAACTGGATATGTCTTCTCCTTCCAGAAAGATATT-CCTTCATCCCTC--GTATAAGCCTTAGCACAGTCTGCCTTGTGTTATATTCGTATCTGTATCTGTCATATTATGTC-----TATCTCATCGAGAGCTCTTTAAGGCCAGGATGTCGGCTTGCTCATGTTAGCATCCTTCAGGA-CACCTGACCCCTAATCTTATCTGA--CTGGTACATGATACATTTTTATCACTTGATAGAATGAATGGGTTGTGAAATT--ATTCGATGTGATCCCAGATAGGATACTG-TTTTTACTGA-------------GGTCTTTCAAGAACAATGCAGGATCAAACTTATAAAGGCATT--TT-TGAAAGTCTCAAAACTCT----CTGCAGGGTATTACTATTATCTGTAACCCTGGTAGCTATTCAAGTTAGTGTCAATTAACTTTTGGCGGCACTCGTAAGATTCCTTATCATCTACATTAGTTTGTCA-GATGAGGTAATGCACTTTTTCTGGGTACAGTTGTCTTTGAAGAGATTGGCAGCGTTTCATAGTTGTAAACAAAACCGTCTCATATGCCGGACGGTGACAAAGAGGGACTAGGACGCCAGCAGCTCTGTGAAAACACTTAAATCCATTTCAGCGAGGAGGAATGGTGGTCTGGTAAATAAATTAGTGTTCTGCTCTGTTCCTTAGCTGCTCTGCTAATGAAT-GGCCCCAGAGA-CTTT-TTTGTCCTGGGTGATAAGCCCCTAATATCTATTCAAGTTCAGCGTAAAGCTCATTTTCTCTAGAGATCTTTGTTTAAAAACAGAA-TTTTTTCAGTAAATATAtttatcaaatt--aaaaatacttcaaat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13986995 1371 - 49578535 ccc------------------agtgtctgccaactgaaaaatggataagcaaaatgtggcatgatctatataatggaatattacttggcagtgaaaagaaatgaagt-gtg-gttcatccattg----------------aaacattatggtaagtgaaagaagccagacacaaaagatgacacactgtgtgattccatttatatcaaatgtccggaagaggccaatccgcagatacagtgtgcagattagtggttgtcaagggctggattgggct-gtggcag-ctaatgcatatggaatttatttaa-----------ggagagaatg-agatgttctaaaactgatgatggctgtgcagtcctgtaaatatactaaaaagcatagaactgtacagtttaaatgg---------------atgaattgtatT---------------TCAGAAGGGCTGTTTTAAACACGGGGAAAA-------CACAGGTATGTGTCTGT-GCTCTGCAG-TCTATCCATCGCTTCCTAGATAAAGTCTAAA---CTCTGCAGCTTGGCTTTTAAGGCCTTTCA--TATACGGAATCCT------------------TCC---CCACCCTCATCTGTATGTCTGTAAACCTTATGTGTTATTCAAATGCCATAATTGGTCAAACTGGACATGTCTTCTCCTTCCAGAAAGATACC-CCTTCATCCCTC--Gtataggccttagcatagccttccttgtgctgtatttatttctgtatctgtcatattacctc-----catctgattgagagccctttaaggctgggatgtccgcttgctcaccttagcatccttcagga-cacctgacccgcaatCTGATCTGA--CTGGTCCGTGGGAACTTTGTATCGCTTGCTAGAATGAATGGGTTGTGAAATT--ATTAGACGTGATCCCAGATAGGCTACCG-TTTTTACTGATCGCTTTCACAAGCATCTTTCAAGAACAAAGCAGCATCAGA--------------------GAAACTCTCAAAACTCT----GTGCAGGGTATTCTTATTATCTGTAACCCTGGTAGCTATTCAAATTAGTGTCAATTAACTTTTGGCGGCACTCTGAAGGTTGCTTATCGCCTACGTCGGCTTGTCG-GATGAGGTAATGCGCTTCTTCTGGGTACAGTTGTCTTGGGAGAGATTGGCAGCGTTTCCTAGTTGTAAACAAAACTGTCTCATATGCC-GACCATGACAAAGAGTGGCTGGGATGCCAGAAGCTCTGTGAAAACACTTCAGTCCATTTCAGTGAGGAGGAACTGCGCTCTGGTAAATAAATCGGTGTCGGGCTGTGTTCCTTAGCTGCTCTGCTCGTGAATGGGCCCCAGCGACTTT--TTTGTCCTGGGTGATAAGCTCCTAATATCTATTCAAGTTGAACGTAAAGCTCATTTTCTCTAGAAATCTTTGTTTAAAAACAGAA-TTTTTTCAGTAGatatatttattaaatt--aaaaatatttCAAAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178631095 1330 + 195471971 CCCCaatggaaagctaacccagaagtctatccactgttgagtagttgaacaaaatgtggcacg-------cattggaatatta-ttggcaataaaaggaaattaagt-atgcattcattcat------------------aaaatgtgtgctaagcgtgggaagccaggcacaaagga--gtggact-tatgattccagttgtatagaa--tctagaggtggcccatctatagctgc--taagtagattggtagtca--agaggcaggtttggga--acagcggactcacggatctggagttatttgta------------gggaaaatg-tagtgcttta---ttgacgatgg-tgtgcagccctataaatatactcaaaagtataaaattatacaagttaggtggctaacttgtactgatgtaaattccatc---------------tcaattaa---ggttttaCAGTGTGGAATA------------GAGTGAGTCTGC-ACTCTAAAATTCTACTTGTTGCCTCTGGAATACAAGACAAAGAGCCCCACTGTCT--CTTCCCATGTCTTCCGT-------GGGTC-------------------------------------------TTCGTCAACCTTGTGCATCACTTGGATGTCACATCTTGATGCCACGGGTTCATCTTCTCCCTCCAGACAGGAGCT---------------------GCCCTTGCATGGACTGCAGTGTGGTGTCTTTATCTCTGTTTTTATTGTTTCTTTTCCTCTGTGTGGGATTGAGGTCACGTCAAGGCAAGGAAGCATGCATGGCTGTGTGAGCATCCCACATGAGCACCTGGCCT---AGCCTACCTCA--TGAGGACACAATAAGTTTCTGTCACCTGACAGGACGGCTGGACTG---GATTGAATTTGGGATGATCCGAAGCACCACACTACCTTTTACCTGCCTCCTTCACTGGGGTCATCAGAAAGCAATTAAGGAGC-AATGTATAAAGACATTTCTT-TTAAACTCTTGAAA--CC----GCACAGGGTAT---TATCATTTGTAACCGTGGAAACTATTCAAATTAGTGTCAATTAACTCCTGGCAGCACCCTTCAGATTCCTTATCTTTGACATTAGTTTGTCAGGATGAGGTAATGTGCTTTTTCTAGGCACCGTTGCCTTTGAAGAGATTGGCGGTGTTTCCTGGTTGTAAACAAAACTGTCGTACATG--GGCCCATGAC--AGAGGGATGAGGAGGCCAGAAG-TCTGTGCAAACACTTGAACCCCTGTCAGCCATGAGGAGCTGCGATCTGGCCAGGAAATTAGCTTCCCACTCTGCGCCCCTGCAGCTCTGCCAGTGAAC-AGGGCCAGAGAAGC---CGAGACACGGGTGTTGGGCCCCTGAAATCTAATTTGGTTCAGGACAAAGTTGATCTTCTCTAGAAATCTTTGCTTCAAGAT-GAA-TTTTT------------TTTCTTTAATTACAAAAATATGTGAGAT i mm10.chr1 N 0 I 1007 s canFam3.chr7 36202213 1430 + 80974532 aaaaagtggaaa--cagtctttatgtccatcagctgatgaatggttggacaaaatgtgat-ttatccagaaaatcggatcatatttgacaataaaaaggaaggaagtagca-atgcatctataacatgggtgcatcttgtagccattctgggaaacgaaagaagccagacacaaaagaccacacattgagtgatcccacttttatgaaatggtcacaataggtaaatctggagacatagtaagcagagtagtgattggcaggggctgacatgggga-gtgacaa-ctagtgagtatggagtttatttta-----------gggga-gatcagagtgttctaaaagtagtgatggttgtacaaccctgcaaatgtactaagaa---------catacacactaactgg---------------gtgaattgtatggtgtgtgaattataatcaataaatatgttTGAAACATGTAGACGAGAAGCATTATACCGGTGTGTCTGTAATTCCAAAA-TTTGTTCAGTGCCTTC-AAATGAAGTCCAGA---CTCCACGGCCTGGCTTTCAAGGCATGTTATTTATATAGAACATTATGTTATTTATATAGAACATTTTTCTTCCTTCATCCATTCATTTGTAAACCATACAC-CTATTCAAATGCTGTAATTCCTTGAACTGGGTGTGTCTTCTCCTTCTAGACAAATACTCCCTTCATCCCCCTGTTCCAACCCCCAGTGCAGTCTGCCTCTTGTTGTGGTTCTTTC-------------TTACCTA-----CATCTGATTGAGAGCTCTTTGGGATCAGGGAGTGTGCTCATTCCGGTTAGCACCCCTCAGAG-CA-----TCCCTGGTCATATCTGG--CTGCTACATGATA-ATTTTTACC---------AATGAATGGATAGTGAAATT--GTGGGAAGTGACCCTGTATGTGACACTG-CCTTTAC----CTCCTTCACCAGAGTTTTTCAAAAACAATGTGAGATCAAACCTACAAAGACATT--TTGGGAAACCCTTCAATCTCTAACCATGCAGGGCATTATTATGCTCTGTAACCCTGGTAACTATTCAAAGTAGTGTCAATTAACTTTTGGCGGCACTCTTAAGATCCCTTATCATCTACATTAGTTTGTCA-GATGAGGTAATGCACTTTTTTTGGGTACAGTTGTCATTGAAGAGATTGGCAGCGTTTCGTAGTTGTAAACAAAACTGTCTCATGTGCGTGGCCATGACAAAGGGAGAATAGGATGCCAGAAGCTCTGTGAAAACACTTAAATCCATTTCAGCAAGAAAGAGTTGTGATCTGGTAAATAAATTAGGGCTCTGCTCTGTTCCTTTGCTCCTCAGCTAATGAGTGGGCCCCAGAG---TCT-CTTGTCCGGGGCGATAAGCCTCTGATACCCATTCAAGTTCAGTGTAAAGCTCCTTTTCTCCAGGGATCTTAGTTTAAAACCAGAA-TTCTTTAAGTAAATATAtttatcaaact--aaaaatagttaaaat i canFam3.chr7 C 0 C 0 a score=242437.000000 s hg38.chr1_KI270759v1_alt 1846 77 + 425601 -----------acacagagagtgatataacaaacaaaccaccgcctgtgtctaacaaatgctg------gctttttgtcatatctgctttgga-t s panTro4.chr1 224740579 77 + 228333871 -----------acacagagagtgatataacaaacaaaccaccgcctgtgtctaacaaatgctg------gctttttgtcatatctgctttgga-t i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226105544 77 - 229942017 -----------ACACAGAGAGTGATACAACAAACAAACCACCGCCTGTGTCTAACAAATGCTG------GCTTTTTGTCATATCTGCTTTGGA-T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139994596 77 - 143122389 -----------ACACAGAGAGTGATACAACAAACAAACCACTGCCTGTGTCTAACAAATGCTG------GCTTTTTGTCATATCTGCTTTGGA-T i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16714383 77 - 229590362 -----------acacagagagtgatataacaaacaaaccaccgcctgtgtttaacaaatgctg------ggtttttgtcatatctgctttgga-t i rheMac3.chr1 C 0 I 6 s macFas5.chr1 223474207 77 - 227556264 -----------acacagagagtgatataacaaacaaaccaccgcctgtgtttaacaaatgctg------ggtttttgtcatatctgctttgga-t i macFas5.chr1 C 0 I 6 s papAnu2.chr1 16528043 78 - 220367699 -----------ACACAGAGAGTGATATAATAAACAAACCACCGCCGGTGTTTAACAAATGCTG------GGTTTTTGTCATATctgctttggatt i papAnu2.chr1 C 0 I 6 s chlSab2.chr25 82325282 77 + 85787240 -----------acacagagagtgatataacaaacaaaccaccacctgtgtttaacaaatgctg------ggtttttgtcatatctgctttgga-t i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13988366 71 - 49578535 -----------ACAT--AGAGTGTTATAACA---AAATCACTGCCTGTGCTGACCAAATGCT-------GCTTTTTGTCATACCTGCTTTGCA-T i calJac3.chr19 C 0 C 0 s canFam3.chr7 36203643 91 + 80974532 atacagaaaatgcagagagaatgatgtaataacc---ctaccagccatgtgtaacaaatgctatttttctttttttgccatatctgctttgga-t i canFam3.chr7 C 0 C 0 e mm10.chr1 178632425 1007 + 195471971 I a score=257193.000000 s hg38.chr1_KI270759v1_alt 1923 100 + 425601 -gtttttttagttgaaaaacatttcgaagatagttgaatcattcctttccttcccaaatctcattgcccctccctccctttcctctgaagccacaattatc s panTro4.chr1 224740656 100 + 228333871 -gtttttttagttgaaaaacatttcgaagatagttgaatcattcctttccttcccaaatctcattgcccctccctccctttcctctgaagccacaattatc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226105621 100 - 229942017 -TTTTTTTTAGTTGAAAAACATTTTGAAGATAGTTGAATCATTCCTTTCCTTCCCAAATCTCATTGTCCCTCCCTCCCTTTCCTCTGAAGCCACAATTATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139994673 100 - 143122389 -TTTTTTTTAGTTGAAAAACTTTTCGAAGATAGTTGAATCATTCCTTTCCTTCCCAAATCTCATTGCCCCTCCCTCCCTTTCCTCTGAAGCCACAATTATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16714466 100 - 229590362 -ttttttttagctgaaaaacatttagaagatagttgaatcattccctcccttcccaaatctcattgcccctccctccctttcctctgaagccacaattatc i rheMac3.chr1 I 6 C 0 s macFas5.chr1 223474290 100 - 227556264 -ttttttttagctgaaaaacatttagaagatagttgaatcattccctcccttcccaaatctcattgcccctccctccctttcctctgaagccacaattatc i macFas5.chr1 I 6 C 0 s papAnu2.chr1 16528127 100 - 220367699 -ttttttttagctgaaaaACATTTAGAAGATAGTTGAATCATTCcttcccttcccaaatctcattgcccctccctccctttcctctgaaGCCACAATTATC i papAnu2.chr1 I 6 C 0 s calJac3.chr19 13988437 91 - 49578535 -TTGTATTTAGCTGAGAAACATATCGAAGATAGTTGGAT-----CCTTCCTTCCCAGATGTCATTG----TCCCTCCCTTTCCTCTGAAGTCACAACTGTC i calJac3.chr19 C 0 I 1 s canFam3.chr7 36203734 96 + 80974532 ttttttttta--tgcaaaacatttcaaagactgttgaatctttcctccccctctgagatcccat---cttcctcctcctctcctcagaagtaatgattatc i canFam3.chr7 C 0 C 0 e mm10.chr1 178632425 1007 + 195471971 I e chlSab2.chr25 82325359 0 + 85787240 C a score=5467.000000 s hg38.chr1_KI270759v1_alt 2023 4 + 425601 TCTA-- s panTro4.chr1 224740756 4 + 228333871 TCTA-- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226105721 4 - 229942017 TCTA-- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139994773 4 - 143122389 TCTA-- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16714566 4 - 229590362 TCTA-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223474390 4 - 227556264 TCTA-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16528227 4 - 220367699 TCTA-- i papAnu2.chr1 C 0 C 0 s canFam3.chr7 36203830 4 + 80974532 --TACA i canFam3.chr7 C 0 C 0 e mm10.chr1 178632425 1007 + 195471971 I e calJac3.chr19 13988528 1 - 49578535 I e chlSab2.chr25 82325359 0 + 85787240 C a score=11525.000000 s hg38.chr1_KI270759v1_alt 2027 19 + 425601 CCAGGAATCTCTCTCTCTC s panTro4.chr1 224740760 19 + 228333871 CCAGGAATCTCTCTCTCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226105725 14 - 229942017 CCAGGAATCTCt-----tt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139994777 19 - 143122389 CCAGGAATCTCTCTttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16714570 13 - 229590362 CCAGAAACGTCTC------ i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223474394 13 - 227556264 CCAGAAACGTCTC------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16528231 13 - 220367699 CCAGAaacgtctc------ i papAnu2.chr1 C 0 C 0 e mm10.chr1 178632425 1007 + 195471971 I e canFam3.chr7 36203834 0 + 80974532 C e calJac3.chr19 13988528 1 - 49578535 I e chlSab2.chr25 82325359 0 + 85787240 C a score=433883.000000 s hg38.chr1_KI270759v1_alt 2046 211 + 425601 --tttttttttttttt---------ttgagacggagtctcgctctgtcgcccaggctggagtgcggtggcgcgatctgggctcactgcaagctccgcctcccgggttcacgcaattctcctgcctcag--cctcccaagtagctgggactacaggtgcccgccaccacgcccggctaa-ttttttgta-tttttagtggagacggggttttaccatgttggccagg s panTro4.chr1 224740779 209 + 228333871 --TCtttttttttttt-----------gagatggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctgggctcactgcaagctccgcctcccgggttcacgcaattctcctgcctcag--cctcccaagtagctgggactacaggtgcctgccaccacgcctggctaa-ttttttgta-tttttagtggagacggggttttaccatgttggccagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226105739 211 - 229942017 --tttttttttttttt-----------gagacggagtctcgctctgtcgcccaggctggagtgcaatggcgcagtctgggctcactgcaagctccgcctcctgggttcacgcaattctcctgcctcagctccccccgagtagctgggactacaggtgcctgccaccatgcccagctaa-ttttttgta-tttttagtggagacggggttttaccatgttagccagg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139994796 188 - 143122389 --tattttttatttttattttttttctgagacggagtctcgctctgtcacccaggctggagtgcaatggcgcgatctgggctcgctgcaagctccg----------------------------------cctcccgagtagctgggactacaggtgcctgccaccgtgcccggctaa-ttttttgta-tttttagtggagacggggttttaccatgttagccagg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16714583 212 - 229590362 tttttttttttttttt-----------tagacggagtctgcctctgccacccaggctggagtgcagtggtgcgatctcggctcactgcaagctctacctcccgggttcacgccattctcctgcctcag--cctcctgagtagctgggactacaggtgcccgccacctcgcctggctag-ttttttgtattttttagaagagatggggtttcactgtgttagccagg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223474407 211 - 227556264 -ttttttttttttttt-----------tagacggagtctggctctgtcacccaggctggagtgcagtggtgcgatcttggctcactgcaagctctacctcccgggttcacgccattctcctgcctcag--cctcctgagtagctgggactacaggtgcccgccacctcgcctggctag-ttttttgtattttttagaagagacggggtttcaccgtgttagccagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16528244 210 - 220367699 -ttttttttttttttt-----------tagacggagtctggctctgtcacccaggctggagtgcagtggtgcgatctcggctcactgcaagctccacctcccgggttcacgccattctcctgcctcag--cctcccgagtagctgggactacaggcgcccgccacctcgcccggctaa--tttttgtattttttagtagagacggggtttcaccatgttagccagg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82325359 212 + 85787240 tttttttttttttttt-----------gagacggagtctcgctgtgtcacccaggctggagtgcagtggccagatctcagctcactgcaagctctgcctcccgggttcacgccgttctcctgcctcag--cctcccgagtagctaggactacaggtgcccaccaccttgcccggctaatttttttgta-tttttagtggagacggggtttcaccgtgttagccagg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178632425 1007 + 195471971 I e canFam3.chr7 36203834 0 + 80974532 C e calJac3.chr19 13988528 1 - 49578535 I a score=11592.000000 s hg38.chr1_KI270759v1_alt 2257 3 + 425601 TCT s panTro4.chr1 224740988 3 + 228333871 CCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226105950 3 - 229942017 TCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139994984 3 - 143122389 TCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16714795 3 - 229590362 TCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223474618 3 - 227556264 TCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16528454 3 - 220367699 tct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82325571 3 + 85787240 TCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13988529 3 - 49578535 TCT i calJac3.chr19 I 1 C 0 s mm10.chr1 178633432 3 + 195471971 TCT i mm10.chr1 I 1007 C 0 e canFam3.chr7 36203834 0 + 80974532 C a score=1009534.000000 s hg38.chr1_KI270759v1_alt 2260 318 + 425601 ACCAGGAATCTTTAACTGGTTAATCTTTCAGTCCAACTTTGATATCAATTGTTAACTC----TTGAGACCATTTTCTATTTCAAAACTGTCCATCTGACTCGTTTCTATTACT------------------CTGAAATAATAGAATCTCAGAATTCTGTGATCTACCTTCAAGCCGATTAAATGGGAA-TTTTTCCCAGAGAGAGTTTAAACCGGCCTCTGGGTTAGGGGAGAAGTATAGACCCCAAAGACCCTTACAGAGAAATACTTGTCATCACGCTCCTGGAATTCTGGGAG--AGGGAGAGGCATGAGAAGGC--TGTGTGGCCTTGTCTTTGAAATACA s panTro4.chr1 224740991 318 + 228333871 ACCAGGAATCTTTAACTGGTTAATCTTTCAGTCCAACTTTGATATCAATTGTTAACTC----TTGAGACCATTTTCTATTTCAAAACTGTCCATCTGACTCGTTTCTATTACT------------------CTGAAATAATAGAATCTCAGAATTCTGTGATCTACCTTCAAGCCCATTAAATGGGAA-TTTTTCCCAGAGAGAGTTTAAACCGGCCTCTGGGTTAGGGGAGAAGTATAGACCCCAAAGACCCTTACAGAGAAATACTTGTCATCACACTCCTGGAATTCTGGGAG--AGGGAGAGGCATGAGAAGGC--TGTGTGGCCTTGTCTTTGAAATACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226105953 318 - 229942017 ACCAGGAATCTTTAACTGGTTAATCTTTCCGTCCAACTTTGATATCAATTGTTAACTC----TTGAGACCATTTTCTATTTCAAAACTGTCCATCTGACTCATTTCTATTAGT------------------CTGAGATAATAGAATCTCAGAATTCTGTGATGTACCTTCAAGCCCATTAAATGGGAA-TTTTTCCCGGAGAGAGTTTAAACCGGCCTCTGGGTTAGGGGAGAAGTATAGACCCCAAAGACCCTTACAGAGAAATACTTGTCATCACACTCCTGGAATTCTGGGGG--AGGGAGAGGCGTGAGAAGGC--TGTGTGGCCTTGTCTTTGAAATACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139994987 318 - 143122389 ACCAGGAATCTTTAACTGATTAATCTTTCAGTCCAACTTTGATATCAATTCTTAACTC----TTGAGACCACTTCCTATTTCAAAACTGTCCATCTGACTGATTTCTATTACT-------------------TGAGATAATAGAATCTCAGAATTCTGTGATCTACCTTCAAGCCCATTAAATGGGAATTTTTTCCCGGAGAGAGTTTAAACCAGCCTCTGGGTTAGGGGAGAAGTATAGACCCCAAAGACCCTTACAGAGAAATACTTGTCATCACACTCCTGGAATTCTGGGAG--AGGGAGAGGCGTGAGAAGGC--TGTGTAGCCTTGTCTTTGAAATACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16714798 336 - 229590362 ACCAGGAATCTTTAACTGGTTAATCTTTCAGTCCAACTTTGATATCAATTGTTAACTC----TTGAGACCATTTTCTATTTCAAAACTGTT--TCTGAGTCATTTCTATTATTCATTTATATTCTATTATTCTGAGATAACAGAATCTCAGAATTCTGCAATCTACCTTCAAGCCCGTTAAATGGGAA-TTTTTCCCGGAGAGAGTTTAAACCAGCCTCTGCGTGAGGGGAGGAGTGTAGACCCCAGAGATCCTTACAGAGAAGCACTTGTCATCACACTCTGGGGATTCTGGGAG--AGAGAGAGGCGTGAGAAGGCTGTGTGTGGCCCTGTCTTTGAAATACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223474621 336 - 227556264 ACCAGGAATCTTTAACTGGTTAATCTTTCAGTCCAACTTTGATATCAATTGTTAACTC----TTGAGACCATTTTCTATTTCAAAACTGTT--TCTGAGTCATTTCTATTATTCATTTATATTCTATTATTCTGAGATAACAGAATCTCAGAATTCTGCAATCTACCTTCAAGCCCGTTAAATGGGAA-TTTTTCCCGGAGAGAGTTTAAACCAGCCTCTGCGTGAGGGGAGGAGTGTAGACCCCAGAGATCCTTACAGAGAAGCACTTGTCATCACACTCTGGGGATTCTGGGAG--AGAGAGAGGCGTGAGAAGGCTGTGTGTGGCCCTGTCTTTGAAATACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16528457 336 - 220367699 ACCAGGAATCTTTAACTGGTTAATCTTTCAGTCCAACTTTGATATCAATTGTTAACTC----TTGAGaccattttctatttcaaaactgTT--TCTGAGTCATTTCTGTTACTCATTTCTATTCTATTATTCTGAGATAACAAAATCTCAGAATTCTGCAATCTACCTTCAAGCCCATTAAATGGGAA-TTTTTCCCGGAGAGAGTTTAAACTGGCCTCTGCGTGAGGGGAGGAGTGTAGACCCCAGAGATCCTTACAGAGAAGCACTTGTCATCACACTCTGGGGAttctgggag--agagagaggtgtgAGAAGGCTGTGTGTGGCCCTGTCTTTGAAATACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82325574 334 + 85787240 ACTAGGAATCTTTAACTGGTTAATCTTTCAGTCCAACTTTGATAACAATTGTTAACTC----TTGAGACCATtttctatttcaaaactgtt--tctgagtcatttctattattcatttctattCTGTTATTCAAAGATAACAGAATCTCAGAATTCTGCGATCTACCTTCAAGCCCATTAAATGGAAA-TTTTTCCC--AGAGAGTTTAAACCAGCCTCTGCGTAAGGGGAGGAGTGTAGACCCCAGAGATCCTTACAGAGAAGTACTTGTCATCACACTCCGGGGATTCTGGGAG--AGAGAGAGGCGTGAGAAGGCTGTGTGTGGCCCTGTCTGTGAAATACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13988532 319 - 49578535 ACCAGGAATCTTTAGCTGCTTAGTCTTTCAGTCCAACTATGATGACAGTCGTTAACTC----TTGAGACCATTCTCTATTTCAAAACTGGTC-GCTGACTCGTTTCTATTATT------------------CTGAGATAATAGAATCTCAGAATTCTGTGATCTACCTTCAAGCCCATCAAATGGGAA-TTTTTCCCTGAGGAAGTGTAAACCAGCCTCTGGGTATGGGCTGGAGTACAGACCCCAAAGAGCCTTACAGAGAAACACTGGTCACCACACTCCTGAGATTCTGGGAGACAGCGAGAGGTATGAGAAGGC--TATGTGGCCTTGTCTTTGAAATACA i calJac3.chr19 C 0 C 0 s mm10.chr1 178633435 269 + 195471971 TCCAGACATCTCTATCTGCTTAGTCTGTGAGCTGAGCTCTGA-GGCAGGCGCTGACACGGGTCTGAGTGTGGGCTGCTCTTCAGAACCTCCCATCTGACTTGCCTGTGTTGTT-----------------------------------CAG--------GGTCTACCCCGAAGCCCATAGCACAGAAG-TCTCCACCT-AGTCTACTTAGATCAACCCCTGGGCTAGGGAAGTGATGTAGACTTGGTAGAT-------------TGCTTGTCCCCAAATTCCTGGCATTCTGGGAA--GGA----------AGAAGGC--TCTGTGGTC---TCCTTGAAATATA i mm10.chr1 C 0 I 313 s canFam3.chr7 36203834 267 + 80974532 ACCAGGAAGCTTTAACTGGTGAATCTTCTAGTCCAACTTTGATGCAAACT------------TGGAGGCCATATTCTACATCCAAACAGTTGATCGGCCTCAATCCCCATATT-----------------------------------CAG--------AGTCCACGTTGGAGCCCACCAAATGAGAA-TTTTCCCCA-AGTCTGTTTTAATCAGCCTCTGGATAAG------------GACTTGGAAGACAGTGACACAGTGATACTTATCACCACGTTTCTGGAATTCTGGCAA--GAGGAGGA-----AGAAGGC--TGTCTGCTTTTATCTTTGAAATCTG i canFam3.chr7 C 0 C 0 a score=726364.000000 s hg38.chr1_KI270759v1_alt 2578 236 + 425601 GAAGTTTGGTGACGCCTGG----------------------------AACATTTTTT--------------------------------------------------------------------ACATGA-------------------------------CAAATATGGTG-AAATTTAACAGGCTATCAAAGTGCAGATCAGGCCAACTGAATAGCAGTTTTGGGGAAAATGACAAGGTGCTAGGTAGTGGAGAGAGGAAGATTAAATAACCTAC-TTGGGTC---TATGTGCTCGTGAAGACACGCTCATATGTCTTCCTTGCATGGATACCTGCCTTGCTCTAAAATAAACTTGAAGTGTGTT s panTro4.chr1 224741309 236 + 228333871 GAAGTTTGGTGACACCTGG----------------------------AACATTTTTT--------------------------------------------------------------------ACATGA-------------------------------CAAATATGGTG-AAATTTAACAGGCTATCAAAGTGCAGATCAGGCCAACTGAATAGCAGTTTTGGGGAAAATGACAAGGTGCTAGGTAGTGGAGAGAGGAAGATTAAATAACCTAC-TTGGGTC---TATGTGCCCATGAAGACACGCTCATATGTCTTCCTTGCATAGATACCTGCCTTGTTCTAAAATAAACTTGAAGTGTGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226106271 235 - 229942017 GAAGTTTGGTGACACCTGG----------------------------AACATTTTTT--------------------------------------------------------------------ACA-GA-------------------------------CAAATATGGTG-AAATTTAACAGATTGTCAAAGTGCAGATGAGGCCAACTGAATAGCAGTTTTGGGGAAAATGACAAGGTGCTAGGTAGTGGAGAGAGGAAGATTAAATAACCTAC-TTGGGTC---TATGTGCCCGTGAAGACACGCTCGTATGTCTTCCTTGCATAGATACCTGCCTCGTTCTAAAATAAACTTGAAGTGTGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139995305 237 - 143122389 CAAGTTTGGTGACACCTGG----------------------------AACATTTTTT--------------------------------------------------------------------ACATGA-------------------------------CAAATATGGTGAAAATTTAACAGGTTATCAAAGTGCAGATCAGGCCAACTGAATAGCAGTTTTGGGGAAAATGACAAGGTGCTAGGTAGTAGAGAGAGGAAGATTAAATAACCTAC-TTGGGTC---TATGTGCCCGTGAAGACACGCTCATGTGTCTTCCTTGCATAGATACCTGCCTTGTTCTAAAATAAACTTGAAGTGTGTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16715134 236 - 229590362 GAAGTTTGGTGGCACCTGG----------------------------AACATTTTTT--------------------------------------------------------------------ACATGA-------------------------------CGGATATGGTG-AAATTTAACAGGCTATCAAAGTGCAGATCAGGCCAACTGAATAGCAGTTTTGAGGAAAATGACAAGGTGCCAGGTAGTGGAGAGAGGAAGATTAAATAACCTAC-TTGGGTC---TATGTGCCTGTGAAGACACATTATTATGTCTTCCTTGCGTAGATACCTACCTTGTTCTAAAATAAACTTCAAGTGTGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223474957 236 - 227556264 GAAGTTTGGTGGCACCTGG----------------------------AACATTTTTT--------------------------------------------------------------------ACATGA-------------------------------CGGATATGGTG-AAATTTAACAGGCTATCAAAGTGCAGATCAGGCCAACTGAATAGCAGTTTTGAGGAAAATGACAAGGTGCCAGGTAGTGGAGAGAGGAAGATTAAATAACCTAC-TTGGGTC---TATGTGCCTGTGAAGACACATTATTATGTCTTCCTTGCGTAGATACCTACCTTGTTCTAAAATAAACTTCAAGTGTGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16528793 236 - 220367699 GAAGTTTGGTGGCACCTGA----------------------------AACATTTTTT--------------------------------------------------------------------ACATGA-------------------------------CGGATACGGTG-AAATTTAACAGGCTATCAAAGTGCAGATCAGGCCAACTGAATAGCAGTTTTGAGGAAAATGACAAGGTGCCAGGTAGTGGAGAGAGGAAGATTAAATGACCTAT-TTGGGTC---TGTGTGCCTGTGAAGACACACTCTTATGTCTTCCTTGTGTAGATACCTACCTTGTTCTAAAATAAACTTCaagtgtgtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82325908 236 + 85787240 GAAGTTTGGTGGCACCTGG----------------------------AACATTTTTT--------------------------------------------------------------------ACATGA-------------------------------TGAATATGGTG-AAATTTAACAGGCTATCAAAGTGCAGATCAGGCCAACTGAATAGCAGTTTTGAGGAAAATGACAGGGTGCCAGGTAGTGGAGAGAGGAAGATTAAATAACCTGC-TTGGGTC---TGTGTGCCTGTGAAGACACACTCTTACGTCTTCCTTGCGTAGATACCTACCTTGTTCTAAAATAAACTTCAAGTGTGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13988851 234 - 49578535 GAAGTTGGGTGACACCTGG----------------------------AACATCTTTT---------------------------------------------------------------------CATGA-------------------------------CAAGTATGGTG-ACATTTAACAGGCTATCGAAGTGCAGATCAAGCCAACTG-ATAGCAGTTTTGGGGAGAATGACAAGGTGCCAGGTAGTGGAGAGAGGAAGATTGAATAACCTAG-TTGGGTG---TATGTGCCTATGAAGACACACTCATGTGTCTTCCTTACATATATACCTGCCTTGTTCCAAAATAAACTTGAAGtttgtt i calJac3.chr19 C 0 I 290 s canFam3.chr7 36204101 336 + 80974532 GGAGTTTGCTGACACCAGGACCTTTAGGATGTGGCAGGTGTGGTGCAAACTTTTTTTTttttaagtaggctccatacccagcgtggagcccaatgtgaggtttgaacttacgacccgagatgaagacctgagctgaggtcaagagtcagctgccaggcaccccagTTGTAGTG-CAATTTAGCAGACTGTCAAATTGCAGAGCAATCCAATTCCCTAGCAGTTTTGGGGAAGGGGACACAGTGCTAGACACTGGAGAGAGGAAAATAAAATAACCTCTGTTGGGGCACATGGGCACATGTGCAAGTACACGCAT--------------------CTTGCCTCatttaaaaataaatg----------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178633704 313 + 195471971 I a score=166252.000000 s hg38.chr1_KI270759v1_alt 2814 70 + 425601 TTTAAAAAAAG---------CATGTGTGcagcctgggtaacatagtgagaccttgcttctacaaaatacaaaataaaaa s panTro4.chr1 224741545 70 + 228333871 TTTAAAAAAAG---------CATGTGTGcagcctgggtaacatagtgagatcttgcttctacaaaatacaaaataaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226106506 70 - 229942017 TTTAAAAAAAA---------CATGTGTGcagcctgggtaacatagtgagaccttgcttctacaaaatacaaaataaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139995542 69 - 143122389 TTTTTAAAAAA----------ACGTGCAcagcctgggtaacatagtgagaccttgcttctacaaaatacaaaataaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16715370 79 - 229590362 TAAAAAAAAACAAAACAAAACATGAGTAcagcctgggtgacatagtgagaccttgcttctacaaaatacaaaatacaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223475193 79 - 227556264 TaaaaaaaaaaaaaaaaaaaCATGAGTAcagcctgggtgacatagtgagaccttgcttctacaaaatacaaaatacaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16529029 75 - 220367699 taaaaaaaaaaaaaaaa----atgagtacagcctgggtgacatagtgagaccttgcttctacaaaatacaaaatacaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82326144 78 + 85787240 TAAAAAACAAAAACAAA-AACATGAGTAcagcctgggtgacatagtgagaccttgcctctacaaaatacaaaatacaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13989375 68 - 49578535 TTTAAAATA-----------CATGTGTGcagcctgggtaacatagtgaggtctcgcttctgcaaaatacaaaataataa i calJac3.chr19 I 290 C 0 s canFam3.chr7 36204437 23 + 80974532 --------------------------------------------------------tctaaaaaaataaaaaataaaaa i canFam3.chr7 C 0 I 27 e mm10.chr1 178633704 313 + 195471971 I a score=479599.000000 s hg38.chr1_KI270759v1_alt 2884 168 + 425601 gagtagccgggcatggtagcgtgcacctgtagtcccagctacatgggaggcggaggcgggaggatcacctgagctgaggaggttgagtttgaggctgcagtgagctgtgattgcaccacttcaccctggcctgggcaacagaataagaccctgtctcaaaacaagaca s panTro4.chr1 224741615 168 + 228333871 aagtagccgggcatggtagcgtgcacctgtagtcccagctacatgggaggcggaggtgggaggatcacctgagctcaggaggttgagtttgaggctgcagtgagctgtgattgcaccacttcaccctggcctgggcaacagaataagaccctgtctcaaaacaagaca i panTro4.chr1 C 0 I 624 s ponAbe2.chr1 226106576 168 - 229942017 aagtagccaggcatggtggcgtgcacctgtagtcccaactacatgggaggctgaggtgggaggatcacctgagctcaggaggttgagtttgaggctgcagtgagccgtgattgcagcacttcactctggcctgggcaacagaataagaccctgtctcaaaacaagaca i ponAbe2.chr1 C 0 I 6 s nomLeu3.chr5 139995611 168 - 143122389 aagtagccgggcatggtggtgtgcacctgtagtcccaactacatgggaggctgaggtgggaggatcacctgagctcaggaggctgagtttgaggctgcagtgtgccgtgattgcaccacttcactctggcctgagcaacagaataagaccctgtctcaaaacaagaca i nomLeu3.chr5 C 0 I 6 s rheMac3.chr1 16715449 168 - 229590362 acctggccagacatggtggtgtgcacctgtagtcccagctacatgggaggctaaggtgggaggatcacgtgcgttcaggagtttgagtttgaggctgcagtgagccgtgattgcaccacgtcactccggcctgggcagcagaataagaccctgtctcaaaacaaacca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223475272 168 - 227556264 acctggccagacatggtggtgtgcacctgtagtcccagctacatgggaggctaaggtgggaggatcacgtgagttcaggagtttgagtttgaggctgcagtgagccgtgattgcaccacgtcactccggcctgggcagcagaataagaccctgtctcaaaacaaacca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16529104 168 - 220367699 acctggccagacatggtggtgtgcacctgcagtcccagctacatgggaggctgaggtgggaggatcacctgagttcaggagtttgagtttgaggctgcagtgagccgtgattgcatcacttcactccggcctgggcagcagaataagaccctgtctcaaaacaaacca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82326222 168 + 85787240 atctggccagacatggtggtgtgcacctgtagtcccagctacatgggaggctgaggtgggaggatcacctgagttcagaagtttgagctcgaggctgcagtgagccgtgattgcaccacttcagtccggcctgggcagcagaataggaccctgtctaaaaacaaacca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13989443 166 - 49578535 aactagccgggcatggtggcatgcacctgtagtcccagctgcatgggaagctgtggtgagaggatcacctgggcttgggactttgagttcgaggctgcagtgagccacgatcgcaccacttcactctggcctgggcaacagaatgagaccttgtcttaaaaagaaa-- i calJac3.chr19 C 0 C 0 e mm10.chr1 178633704 313 + 195471971 I e canFam3.chr7 36204460 27 + 80974532 I a score=22576.000000 s hg38.chr1_KI270759v1_alt 3052 9 + 425601 aaacaaaaa s panTro4.chr1 224742407 9 + 228333871 AAACAAAAA i panTro4.chr1 I 624 C 0 s ponAbe2.chr1 226106750 9 - 229942017 aaacaaaaa i ponAbe2.chr1 I 6 C 0 s nomLeu3.chr5 139995785 9 - 143122389 aaacaaaaa i nomLeu3.chr5 I 6 C 0 s rheMac3.chr1 16715617 9 - 229590362 aaacaaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223475440 9 - 227556264 aaacaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16529272 9 - 220367699 aaacaaaca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82326390 9 + 85787240 aaacaaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13989609 6 - 49578535 ---aaaaag i calJac3.chr19 C 0 C 0 e mm10.chr1 178633704 313 + 195471971 I e canFam3.chr7 36204460 27 + 80974532 I a score=2656367.000000 s hg38.chr1_KI270759v1_alt 3061 890 + 425601 CATGAATGGAACA-AGAAAGAATCATGAGGTGAGGAAATGAAGGTTAAGGGAAGATGAGGATCAGAGGGAG-TAACAGGTTCAGTTCTAAGAtgaggtccgcatgtggaatacataccattaggcacgaagctcgggctggaagtaccctacagactgcaccatgagcttctcaacagacagtgg-------gtaaaggagtcagtgacagaatctagggcttttaagataaaagcaaaccagttggccaaggaagaatggctatttccagcacagatgcc-tgagggccattttttctgaggatGTGGCTCTCACCCTTGATGGA-------------CAATCAGGACATTCTAGCA-AATGTGCATTGTGCTCTAGAGGGGTG-------TGTGCAGGGAGCATAGCTGAGGGATGGAGGGGCTCATGTGCATCAGGATTGCCTGGAATACCAGGGATTATTAGTGCCAATAATGCTGTCAATGACGTtgtgatggttaa-ttttctgtgtcaacttgactgggccgcgggatgcccagatatttggtcaaacgttgttcttgggtgtgtctgtg-----------------------------------------------aacaaatagccctcactggtgcaggtgagtctcatccaatcggtcgaaggcctgagtaga--------actggccttcccgtgagtcagatggaagt--cctcttgcctgactgc--tcgatctgggaca------------------------------------tgctgctttgggactccagctgaaacatcagttcttcctgggtctcaaggctgccagcctttgggatggaatgacgccatcgggtctcctggttctcagccctttggactaccactgggactgtggtga--tagtctctcttgggtcgccagctggccaactgcagatcttgggatctgtcattctcca------------------tcttatgataaatcaataaatacctctctcattatatata s panTro4.chr1 224742416 891 + 228333871 CATGAGTGGAGCA-AGAAAGAATCATGAGGTCATTTAATGAAGGTTAAGGGAATATGAGGATCAGAGGGAG-TAACTGGTTCAGTTCTAAGAtgaggtccgcacgtggaatacataccattaggcacgaagctcgggctggaagtaccctacagactgcaccatgagcttctcaacagacagtgg-------gtaaaggagtcagtgacagaatctagggcttttaagataaaagcaaaccaggtggccaaggaagaatggctatttccagcacagatgccctgagggccattttttctgaggatGTGGTTCTCACTCTTGATGGA-------------CAATCAGGACATTCTAGCA-AAAGTGCATCGTGCTCTAGAGGGGTG-------TGTGCAGGGAGCATAGCTGAGGGATGGAGGGGCTCATGTGCATCAGGATTGCCTGGAATACCAGGGATTATTAGTGCCAATAATGCTGTCAATGACGTtgtgatggttaa-tttcctgtgtcaacttgactgggccgtgggatgcccagatatttggtcaaacgttgttcttgggtgtgtctgtg-----------------------------------------------aacaaatagccctcactggtgcaggtgagtctcatccaatcggtcgaaggcctgagtaga--------actggccttcccgtgagtcagatggaagt--ccttttgcctgactgc--tcgatctgggaca------------------------------------tgctgctttgggactccagctgaaacatcagttcttcctgggtctcaaggctgccagcctttgggatggaatgacaccatcgggtctcctggttctcagccctttggactatcactgggactgtggtga--tagtctctcttgggtcgccagctggccaactgcagatcttgggatctgtcattctcca------------------tcttatgataaatcaataaatagctctctcattatatata i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226106759 904 - 229942017 CATGAGTGGAACA-AGGAAGAATCATGAGGTGAGGAAATGAAGGGTAAGGGAAGATGAGGATCAGAGGGAG-TAACAGGTTCAATTCTAAGATGAGGTCAGCATGTCGAATACATACCATTAGGCATGAAGCTCTGGCTAGAAGTGCCGTACAGATTGCACCATGAGCTTCTCAGTAGACAGTGG-------GTAAAGGAGTCAGTGACAGAATCTGGGGCTTTTAAGATAAAAGCAAACCAGCTGGCCAAGGAAGATTGGCTATTTCCAGCACAGATGCC-TGACAGCCATTTTTTCTGAGGATGTGGCTCTCACCCTTGATGGA-------------CAATCAGGGCATTCTAGCA-AATGTGCATCGTGCTCTAGAGGGGTG-------TGTGCAGGGAGCATAGCTGGGGGATGGAGGGGCTCATGTGCATCAGGAATGCCTGGAATACCAAGGATTATTAGTGCCAATAATGCTGTCAGTGACATtgtgatggttaa-ttttctgtgtcaacttgactgggccatgggatgcccagatatttggtcaaacgttgttctggggtgtgtctgtg-----------------------------------------------aacaaatagccctcactagtgcaggtgagtctcatccaatcggtcaaaagcctgagtaga--------actggccttcccgtgagtcagacggaagt--cctcttgcctgactgc--tcgatctgggaca------------------------------------tgctgctttgggactccagctgaaacatcagttcttcctgggtctcaaggctgccagcctttgggatggaatgacaccatcgggtctcctggttctcagccctttggactatcactggaactgtggtga--taggctctcttgggtcgccagctggccaactgcagatcttgggatctgtcattctccat----acatgagccagtttcttatgataaatcaataaatacctctctcattctatata i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139995794 905 - 143122389 CATGAGTGGAACA-AGAAAGAATCATGAGGTGAGGAAATGAAGGTTAAGGGAAGATAAGGATCAGAGGGAGTTAACAGGTTCAATTCTAAGACgaggtcagcatgtagaatacataccattaggcatgaagctctggctagaagtgccccacagattgcatcatgaacttctcaatagacagtgg-------gtaaaggagtcagtgacagaatttagggcttttaagataaaagcaaaccagttggccaaggaagaatggctatttccagcacagatgcc-tgagagccattttttctgaggatGTAGTTCTCACCCTTGATGGA-------------CCATCAGGACATTCTAGCA-AATGTGCATTGTGCTTTAGAGGGGTG-------TGTGCAGGGAGCATAGCTGAAGGATGGAGGGGCTCATGTGCATCAGGAATGCCCGGAATACCAAGGATTATTAGTGCCAGTAATGCTGTCAATGACATtgtgatggttaa-ttttctgtgtcaacttgactgggccatgggatgcccagatatgtggtcaaacgttgttctggggtgtgtctgtg-----------------------------------------------aacaaatagccctcactcgtgcaggtgagtctcatctagtcggtcgaaggccggagtaga--------actggccttcccgtgagtcagacggaagt--cctcttgcctgactgc--tcgatctaggaca------------------------------------tgctgctttgggactccagctgaaacatcagttcttcctgggtcacaaggctgccagcctttgggatggaatgacatcatcgggtgtcctggttctcagccctttggactatcactggaactgtggtga--tagtctctcttgggtcaccagcttgccaactgcaggtcttgggatctgtcattctccat----acataagccagtttcttatgataaatcaataaatacctctctcattatatata i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16715626 909 - 229590362 CACAAGTGGAACA-AGAAAGCATCATGAGGTGAGGAAATGAAGGTTAAGGAAAGATGAGGATCAGAGGGAG-TAACAGGTTCAATTCTAAGATGGGGTCAACCTGTagaatacgtaccattaggcaggaagctttggctagaagtgccccacagcttgcatcatgagcttctctatagacagtgg-------gtaaaagaatcagtgacagaatttagggctgttaagataaaagcaaaccagttgcctgaggaagaatggccattcccagcacagacgcc-tgagagcca-tttttcTGAGGATGTGGTTCTCACCCTTGATGGA-------------CAATCAGGACATTCTAGCA-AGCGTGCATCGTGCTCTGGAGGGGCGCGTGGGCTGTGCAGGGAGCATCGCTGAGGGCTGGAGGGGTTCACGTGCATCAGGACTGCCTGGAATACCAAGGGTTATTAGTGCCAATAATGCTGTCAATGACA-tgtgatggttaa-ttttctgtgtcaacttgcctgggctatgggatgcccagatattcggtcaaacattgttct-gggtgtgtctgtg-----------------------------------------------aacaaacagccctcactagtacaggtgagtctcatccagtcggtcaaaggcttcagcaga--------accggccttcccgtgagtcagacagaact--cctcttgcctgactgc--tccatctgggaca------------------------------------tgctgctctgggactccagctgaaacatcagttcttcctgggtctcaaggctgccagcctttgggctggaaggacaccatc-ggtctcctggttctcagccctttggactgtcactggaactgtggtgacccagtctgtcttgggtcgccagcttgccaactacagatcttgggatccgtcatcctccat----acatgagccagtttcttataataaatcaataaataactctctcattatatata i rheMac3.chr1 C 0 I 236 s macFas5.chr1 223475449 909 - 227556264 CACAAGTGGAACA-AGAAAGCATCATGAGGTGAGGAAATGAAGGTTAAGGGAAGATGAGGATCAGAGGGAG-TAACAGGTTCAATTCTAAGATGGGGTCAACCTGTAGAATACGTACCATTAGGCAGGAAGCTTTGgctagaagtgccccacagcttgcatcatgagcttctctatagacagtgg-------gtaaaagaatcagtgacagaatttagggctgttaagataaaagcaaaccagttgcctgaggaagaatggccattcccagcacagacgcc-tgagagcca-tttttcTGAGGATGTGGTTCTCACCCTTGATGGA-------------CAATCAGGACATTCTAGCA-AGCGTGCATCGTGCTCTGGAGGGGCGCGTGGGATGTGCAGGGAGCATCGCTGAGGGATGGAGGGGTTCACGTGCATCAGGACTGCCTGGAATACCAAGGGTTATTAGTGCCAATAATGCTGTCAATGACA-tgtgatggttaa-ttttctgtgtcaacttgactgggctatgggatgcccagatatttggtcaaacattgttct-gggtgtgtctgtg-----------------------------------------------aacaaacagccctcactagtacaggtgagtctcatccagtcggtcaaaggcttcagcaga--------accggccttcccgtgagtcagacagaact--cctcttgcctgactgc--tccatctgggaca------------------------------------tgctgctctgggactccagctgaaacatcagttcttcctgggtctcaaggctgccagcctttgggctggaaggacaccatc-ggtctcctggttctcagccctttggactgtcactggaactgtggtgacccagtctgtcttgggtcgccagcttgccagctgcagatcttgggatccgtcatcctccat----acatgagccagtttcttataataaatcaataaataactctctcattatatata i macFas5.chr1 C 0 I 3 s papAnu2.chr1 16529281 909 - 220367699 cacaagtgGAACA-AGAAAGCATCATGAGGTGAGGAAATGAAGGTTAAGGGAAGATGAGGATCAGAGGGAG-TAACAGGTTCAATTCTAAGATGGGGTCAACCTGTAGAATACGTACCATTAGGCAGGAAGCTTTGGCTAGAAGTGCCCCACAGACTGCATCATGAGCTTCTCTATAGACAGTGG-------GTAAAAGAGTCAGTGACAGAATTTAGGGCTTTTAAGATAAAAGCAAACCAGTTGCCTAAGGAAGAATGGCCATTTCCAGCACAGACGCC-TGAGAGCCA-TTTTTCTGAGGATGTGGTTCTCACCCTTGATGGA-------------CAATCAGGACATTCTAGCA-AGCGTGCATCGTGCTCTGGAGGGGTGCGTGGGATGTGCAGGGAGCATCGCTAAGGGATGGAGGGGTTCATGTGCATCAGGACTGCCTGGAATACCAAGGGTTATTAGTGCCAATAATGCTGTCAGTgaca-tgtgatggttaa-ttttctgtgtcaacttgactgggctatgggatgcccagatatttggtcaaacattgttct-gggtgtgtctgtg-----------------------------------------------aacaAACAGCCCTCACTAGTACAGGTGAGTCTCATCCAGTCGGTCAAAGGCTTCAGCAGA--------ACCGGCCTTCCCGTGAGTCAGACAGAACT--CCTCTTGCCTGGCTGC--TCCATCGGGGACA------------------------------------TGCTGCTCTGGGACTCCAGCTGAAACATCAGTTCTTCCTGGGTCTCAAGGCTGCCAGCCTTTGGGCTGGAAGGACACCATC-AGTCTCCTGGTTCTCAGCCCTTTGGACTGTCACTGGAACTGTGGTGACCCAGTCTCTCTTGGGTCGCCAGCTTGccaactgcagatcttgggaTCTGTCATCCTCCAT----ACATGAGCCAGTTTCttataataaatcaataaatatctctctcattatatata i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82326399 907 + 85787240 CATGAGTGGAACA-AGAAAGCATCATGAGGTGAGGAAATGAAGGTTAAGGGAAGATGAGGATCAGAGGGAG-TAACAGGTTCAATTCTAAGATGGGGTCAACCTGTAGAATACGTACCATTAGGCAGGAAGCTTTGgctagaagtgccccacagcttgcatcatgagcttctcgatagacagtgg-------gtaaaagaatcagtgacagaatttagggcttttaagataaaagcaaaccagttgcctaaggaagaatggctatttccagcacagatgcc-tgagagcca-tttttcTGAGGATGTGGTTCTAACCCTTGATGGA-------------CAATCAGGACATTCTAGCA-AGCGTGCATCGTGCTCTGGAGGGGTGCATGGGATGTGCAGGGAGCATCACTGAGGGATGGAGGGGTTCATGTGCATCAGGACTGCTTGGAATACCAAGGGTTATTAGTGCCAATAATGCTGTCAATGACA-tgtgatggttaa-ttttctgtgtcaacttgactgggctatgggatgtccagatatttggtcaaacattgttct-gggtgtgtctgtg-----------------------------------------------aacaaacagccctcactagtacaggtgagtctcatccagtcggtcaaaggcttcagtaga--------accggccttcccgtgagtcagacggaact--cctcttgcctgactgc--tgcatctgggaca------------------------------------tgctgctttgggact-cagctgaaacatcagttcttcctgggtgtcaaggctgccagcctttgggctggaaggacaccatc-ggtctcctggttctcagccctttggactgtcactggaactgtggtgacccagtctctcttgggtcgccagcttgccaactgcagatcttgggatctgtcat-ctccat----acatgagccagtttcttatagtaaatcaataaatatctctctcattatatata i chlSab2.chr25 C 0 I 2 s calJac3.chr19 13989615 841 - 49578535 aaTGAGTGGAACA-AGAAAGAATAATGAGGTGAGGAAATGAAGGCTAAGATAAGATGAGGAGTAG-GGGAG-TAACAGGTTCAATTCTCAGACGGGGTCAGCATGTAGAATATACACC-------------------------GTGCCCCACAGATTGCATCCTGAGCTTCTCAATAGACGGTGG-------GTAAAGGAATCCGTGACACAATTCAGGGCTTGTGAGATACAAGCAAACCGGTTGCCCAAGGGAGAATGGCTATTTCCAGCACAGATGCC-TGAGAGCCG-TTTTTCTGAGGATG-GGTTCTCACCCTTGATGGA-------------CAGTCAGAACATTCTGGCA-AATGTGCATCATGCTCTAGCGGTGTG----TGGTGTGCATGGGGCAAAGCTGAGGGCTGGAGGGGTTCCTGTGCATGAGGAATGCCCGG-ATACCAAGGATTATTAGTGCCAA-AATGCTGTCGACGACATtgtggtggtgaatttttttgactcaactcgactgggccatgggatgcccagatatttggtcaaaccttgttct-aggtgtgtctgtg-----------------------------------------------aacaaatagccctcactaatgcaggtgagtctcttccagttggtcaaaggcccaagtgga--------accagcctgcccatgagtcggagggagct--cctcttgcctgacggc--tcgatc---------------------------------------------------tgtgactccagctgaaacat-agctcctcctgggtctcaaggctgccagcctctggactg----gataccatc-----tcctggttctcagccctt--gctcatccctggaactgtggtca--taatctctcctgggtctccagcttgccaacagcagctcttggaacctgccat---ccat----atatgtgacagtttctta----gaatcaatgaata--tttctcactatgtata i calJac3.chr19 C 0 I 3 s canFam3.chr7 36204487 932 + 80974532 CTTTAGTAGAACAGAAGGAGAATGATaagataaggaaagg----------------ggggaatggatggat-atatgagttcaaatctcgggtctggtcagcatgtggaatgcaggctatgaggtgtgaaactcc--ccagacgtggcccccagacttggtcatgagcttttcagtacagagttgaaagaacggaaagggattagtgagacagtgtggggcccttacaataaaagcaaactagttggccaaggaaacatggttatttctggcacaggtgcc-tgggaacca-tttccctggggatgtagtcctcaCCCCTGATGGGATGGGGAGGGGACTGGCCAGGATCGTCTTGCAGAGCGTGCA--GAGCGCTGGAGTAGTGTGTGTGGTGTACAGAGAGCACAGCTGAGGGGCAGGGGTA-----ATAGATCAGGGATAGCCTGGTGACCAAGGGCTGGGAGTGCCAGTAGTGCTGACAGGGACATtatgttggtcat-tttcatgtgtcggcct--cctggccatggg-ttcccagacatttggtcggacattatttg-gggtgtgtccctgagggtgttttgggatgatactaggatttgaatccatagccggagtaaagcagattgctctccccagt-tagg---gcccagtgtaatcagttgaaggtctgaatagagcagaaaggctgactttttccggaggaagaatgaactcccctcctgctctgctgcctttgatatggagcattgttttgttttgttttgccttttttttttttttttttctgcctttggactagaactgaaacatggtctctccctgggtctggagcctcctggccttcagtcaggaactgcaccatctgttctcttgggtc------------------------------------tgatttacc---gatcacc----------ttgcagatcttgggacttctcagcctccataatcacctgagctagttccttataataaatc----------cctttta--------- i canFam3.chr7 I 27 C 0 e mm10.chr1 178633704 313 + 195471971 I a score=240203.000000 s hg38.chr1_KI270759v1_alt 3951 182 + 425601 taATATATAATATGAAA--TAAATtaataaatatctctcactatatatagtgatatatatatat-------------------taggtat------at---tttatatatatgtatatcctattagtcctgtttctccagagaactctggcgaatacaGACATTCCATATGCAAAGAGAGGCCGCGT-GGTCTTAGGTACTAGTTGtaaaatt s panTro4.chr1 224743307 180 + 228333871 taatatataatatgaaa--taaattaataaatatctcactatatatatagtgatatatatacac-------------------taggtat------at---tttatatata--tatatcctattagtcctgtttctccagagaactctggcgaatacaGACATTCCATATGCAAAGAGAGACCGCGT-GGTCTTAGGTACTAGTTGTAAAATt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226107663 169 - 229942017 taatatgt-------aa--taaattaa-atatctctcactatatatatagtgatatatatacat------------------ataggtat------a-------atatata--tatatcctattagtcctgtttctccagagaactctggcgaatacaAACATTCCATATGCAAAGAGAGACCGTGT-GGTCTTAGGTACTAGTTGTAAAATt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139996699 179 - 143122389 taATATATAATATGTAA--TAAATtaataaatatctctcactatatatagtgatatatatacat------------------ataggtat------a-------atatatatatatatcctattagtcctgtttctccagagaactctggcgaatacaAATATTCCATATGCAAAGAGAGATCGCAT-GGTCTTAGGTACTAGTTGTAAAATt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223476361 167 - 227556264 -tatatataatatataa-------taataaatatctcccactatatatactgatatatacata--------------------tatgtgt------a-------atatata--tatatcctattagtcctgtttctccagagaactctggtgaatacaAACATTCCATATGCTGGGAGAG--TGCAT-GGTCTTAGGTACTAGTCGtaaaatt i macFas5.chr1 I 3 C 0 s papAnu2.chr1 16530191 167 - 220367699 -tatatataatatataa-------taataaatatctctcactatatatactgatatatacata--------------------tatgtgt------a-------atatata--tatatcctattaatCCTGTTTCTCCAGAGAACTCTGGTGAATACAAACATTCCATATGCTGGGAGAG--TGCGT-GGTCTTAGGTACTAGTcgtaaaatt i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82327308 177 + 85787240 -ta-ATATAATATATAA--TAAATtaataaatatct--cactatatatactgatatatacata--------------------tgtgtgttttatat-------atattta--tatatcctattagtcctgtttctccagagaactctggtgaatacaAACATTCCATATGCAAAGAGAGATCGTGT-GTTCTTAGGTACTAGTTGTAAAATt i chlSab2.chr25 I 2 C 0 s calJac3.chr19 13990459 160 - 49578535 ccatatataAAGTGAAATATATATCTGTAGATAGTGAGAGAGATATATAGAGAGATATGTATATAGTGAGATATAGAGTGAAATATATAT------A-------AGAAATA--TATA------TAGTGCTatatatacatata-------tacatatatacat---acatacataGATGA---------ATCTCATATAC------------- i calJac3.chr19 I 3 C 0 s canFam3.chr7 36205419 171 + 80974532 --tgagagagtataaaa------tctttatatgtctatacatatgtatatACACACATACACAC------------------ATGAGCAC------ACAAATGTGCATGTG--CACATCCCATTACTTCTGTTTTTCTGTAGACCCCTG--------ATACAGTCTGTATGCAAAGAGAGATAGCTTGGGCCTTGGGTTCTAGTTGTAAAATT i canFam3.chr7 C 0 I 67 e mm10.chr1 178633704 313 + 195471971 I e rheMac3.chr1 16716535 236 - 229590362 I a score=269081.000000 s hg38.chr1_KI270759v1_alt 4133 193 + 425601 ataatatatattatatt--atata-------taa-----------------tattta-atat---atata-ataaatcaat----aaatatataTCTCACTATat----atatctcttac-tatatatataaatcaataaatatctctctctcactatatg------tatatat--atcctattagtcctgtttctccagagaactctggccaatacaAACACTCCATATGCAAAGAGAGG s panTro4.chr1 224743487 200 + 228333871 ataatatatattatatt--atatataatatttaa-----------------tattta-atat---atata-ataaatcaat----aaatatatatCTCACGATat----atatctcttac-tatatatataaatcaataaatatctctctctcactatatg------tatatat--atcctattagtcctgtttctccagagaactctggcgaatacaGACATTCCATATGCAAAGAGAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226107832 193 - 229942017 ataatatatattatatttaatata-------taa-----------------tattta-atat---atata-ataaatcaat----aaatatatatctcactatat----atatCTCTTAC---TATacataaatcaataaatatctctctctcactatatg------tatatat--atcctattagtcctgtttctccagagaactctggcgaatacaAACATTCCATATGCAAAGAGAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139996878 203 - 143122389 ataatatatattatatt--atata-------taa-----------------tatcta-taat---atata-attaatatataatcaaatatatatctcacgatat----atatctctcac-tatatatataaatCaataaatatctttctctcactatatgtatatatatatat--atcctattagtcctgtttctccagagaactctggtgaatacaAACATTCCATATGCAAAGAGAGG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223476528 204 - 227556264 ataatatatattatatt--atata-------taa---ttatttataatatatattta-atataatatata-ataaatcaat----aattatatatCTCACTATat----gtatctctcac-tgtatatatcaat----aaatctctctctctcactatgtg------tatatat--atcctattagtcctg-ttctctagagaactctggcgaatgcaAACATTCCATATGCTGGGAGAG- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16530358 205 - 220367699 ataatatatattatatt--atata-------taatatttatttataatatatattta-atataatatata-ataaatc-------aattatatatctcactatat----atatctctcac-tgtatatatcaat----aaatctctctctgtcactatatg------tgtatat--atcctattagtcctg-ttcTCTAGAGAACTCTGGCGAATGCAAACATTCCATATGCCGAGAGAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82327485 213 + 85787240 ---atatatattatatt--atata-------taatatttatttataatgtatattta-atata--atata-ataaatcaat----aattatatatctcattatatataaatatctctcacatatatatatCAATCaacaaatctctctctctcactatatg------tatgtat--gtcctattagtcctgtttctccagagaactctggccaatacaGACATTCCATATGCCGAGAGAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13990619 140 - 49578535 ---ATACATATGAGATTC-ATCta-------tg------------------tatgtatgtat---atatgtatatatgtat----atatatacatgt----atat----atgaatctcatatacatatatacatatacatata------------tacatg------tatatatgaatctcat------------------------------atacataca-tacatatcta-------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178633704 313 + 195471971 I e canFam3.chr7 36205590 67 + 80974532 I e rheMac3.chr1 16716535 236 - 229590362 I a score=1974.000000 s hg38.chr1_KI270759v1_alt 4326 5 + 425601 TCACG s panTro4.chr1 224743687 5 + 228333871 CCGCG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226108025 5 - 229942017 TCACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139997081 5 - 143122389 TCACG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223476732 4 - 227556264 -TGCA i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82327698 3 + 85787240 --GCG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13990759 4 - 49578535 -cata i calJac3.chr19 C 0 C 0 e mm10.chr1 178633704 313 + 195471971 I e canFam3.chr7 36205590 67 + 80974532 I e rheMac3.chr1 16716535 236 - 229590362 I e papAnu2.chr1 16530563 0 - 220367699 C a score=26556.000000 s hg38.chr1_KI270759v1_alt 4331 25 + 425601 TGATCTTAGGTACTAGTTGTAACAT s panTro4.chr1 224743692 25 + 228333871 TGATCTTAGGTACTAGTTGTAACAT i panTro4.chr1 C 0 I 596 s ponAbe2.chr1 226108030 25 - 229942017 TGGTCTTAGGTACTAGTTGTAAAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139997086 25 - 143122389 TGGTCTTAGGTACTAGTTGTGAAAT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223476736 25 - 227556264 TGGTCTTAGGTACTAGTCGtaaaat i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82327701 25 + 85787240 TGGTCTTAGGTACTAGTCGTAAAat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13990763 12 - 49578535 cgtacgtatgta------------- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36205657 23 + 80974532 taattttaagtattc-ttataata- i canFam3.chr7 I 67 C 0 e mm10.chr1 178633704 313 + 195471971 I e rheMac3.chr1 16716535 236 - 229590362 I e papAnu2.chr1 16530563 0 - 220367699 C a score=21692.000000 s hg38.chr1_KI270759v1_alt 4356 30 + 425601 tataatatatat-tata---------------tataatatttattt s panTro4.chr1 224744313 30 + 228333871 tataatatatat-tata---------------tataatatttattt i panTro4.chr1 I 596 I 7 s ponAbe2.chr1 226108055 30 - 229942017 tataatatatat-tata---------------tatgatatttattt i ponAbe2.chr1 C 0 I 7 s nomLeu3.chr5 139997111 25 - 143122389 tataaca------tata---------------tattatatttattt i nomLeu3.chr5 C 0 I 7 s macFas5.chr1 223476761 45 - 227556264 tataatatatat-tatattatatataattatttataatatatattt i macFas5.chr1 C 0 I 7 s chlSab2.chr25 82327726 35 + 85787240 tataatatagat-tatattata----------tataatattcgttt i chlSab2.chr25 C 0 I 15 s calJac3.chr19 13990775 25 - 49578535 ---gatatgtatgtatg---------------ta-gatatgtgt-- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36205680 29 + 80974532 -ataataGGATC-AATA---------------ATTAACATTTATGG i canFam3.chr7 C 0 C 0 e mm10.chr1 178633704 313 + 195471971 I e rheMac3.chr1 16716535 236 - 229590362 I e papAnu2.chr1 16530563 0 - 220367699 C a score=80773.000000 s hg38.chr1_KI270759v1_alt 4386 72 + 425601 tatataataaatcaataaatatatatctcactatata-taaatatctctcactatatatacatatCAATCaat s panTro4.chr1 224744350 66 + 228333871 tatataataaatcaataaatatatatctcactatata-taaataTCTCTCACTATATATA------AATCAAT i panTro4.chr1 I 7 C 0 s ponAbe2.chr1 226108092 70 - 229942017 tatataataaatcaataaatatatatctcactatata-taaatatctctcactatatata--tatCAATCaat i ponAbe2.chr1 I 7 C 0 s nomLeu3.chr5 139997143 70 - 143122389 tatataataaatcaataaatatatatctcactatata-taaatatctctcactatatata--tatCAATCaat i nomLeu3.chr5 I 7 C 0 s rheMac3.chr1 16716771 60 - 229590362 tatataataaatcaataattatatatCTCACTATat-----gtatctctcactgtatata--------tcaat i rheMac3.chr1 I 236 C 0 s macFas5.chr1 223476813 60 - 227556264 tatataataaatcaataattatatatCTCACTATat-----gtatctctcactgtatata--------tcaat i macFas5.chr1 I 7 C 0 s chlSab2.chr25 82327776 56 + 85787240 tatataataaatcaataattatatatctcacta---------tatCTCTCATTGTATACA--------TCaat i chlSab2.chr25 I 15 C 0 s calJac3.chr19 13990800 62 - 49578535 --------atatgtatatatgtatgtgtatgtatgta-tatgtatgtatgcatgtgtata--tatgcatgtat i calJac3.chr19 C 0 C 0 s canFam3.chr7 36205709 52 + 80974532 -------CATACTTTGAAGCATATATGTTAACTCATAGCATATAT-----ATTACATATA--------TTAG- i canFam3.chr7 C 0 C 0 e mm10.chr1 178633704 313 + 195471971 I e papAnu2.chr1 16530563 0 - 220367699 C a score=122695.000000 s hg38.chr1_KI270759v1_alt 4458 66 + 425601 aaatatctctctctcactatatgtatatatatatatcctatta----gttctgtttctccagagaaccct s panTro4.chr1 224744416 64 + 228333871 AAATATCTCtctctcactatatgtatatatatat--cctatta----gttctgtttctccagagaaccct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226108162 64 - 229942017 aaatatctctctctcactatatgtatatatatat--cctatta----gttctgtttctccggagaaccct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139997213 64 - 143122389 aaatatctctctctcactatatgtatacatatat--cctatta----gttctgtttctccagagaaccct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16716831 59 - 229590362 aaa--tctctctctcactatatgtatatatat----cctatta----gtcctg-ttctctagagaactct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223476873 61 - 227556264 aaatctctctctctcactatgtgtatatatat----cctatta----gtcctg-ttctctagagaactct i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82327832 61 + 85787240 aaatctctctctctcactatatgtatgtatgt----cctatta----gtcctg-ttctccagagaactct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13990862 64 - 49578535 gtatatatatatgtatgtatgtGtctatctacct--cctattc----atcctgtttctccagagaactct i calJac3.chr19 C 0 C 0 s mm10.chr1 178634017 63 + 195471971 AAACACCTCCTTCTCCTTACCTGTGTA-ATCTGG--CCTATTA----GTTTTGGTTTTCAGGAGAACTCT i mm10.chr1 I 313 C 0 s canFam3.chr7 36205761 45 + 80974532 ------------CTCACTGTAGC-------------CTCATTACAATATTCtttttttttaaaagatttt i canFam3.chr7 C 0 I 160 e papAnu2.chr1 16530563 0 - 220367699 C a score=55693.000000 s hg38.chr1_KI270759v1_alt 4524 35 + 425601 ggcaaatacaAACATTCCATATGC--CAAGAGAGATA s panTro4.chr1 224744480 35 + 228333871 ggcaaatacaAACATTCCATATGC--CAAGAGAGATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226108226 33 - 229942017 ggcaaatacaaaCATTCCATATGC--CGAGAGAG--A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139997277 35 - 143122389 ggcaaatacaaaCATTCCATATGC--CAAGAGAGATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16716890 33 - 229590362 ggcgaatgcaAACATTCCATATGC--TGGGAGAGT-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223476934 33 - 227556264 ggcgaatgcaAACATTCCATATGC--TGGGAGAGT-- i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82327893 33 + 85787240 ggcgaatgcaAACATTCCATATGC--CGAGGGAGA-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13990926 35 - 49578535 ggataatacaAACATTCCATATGCAACGAGAGAGA-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178634080 19 + 195471971 ----AACACAAAAACACTATTTG-------------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36205806 160 + 80974532 I e papAnu2.chr1 16530563 0 - 220367699 C a score=190025.000000 s hg38.chr1_KI270759v1_alt 4559 68 + 425601 GCGTGGTCTTAGG---TACTAGTTGTACAATTATTTTACATTTGAAGA------------GGTAAACCTTTGGGTTCATAGGC s panTro4.chr1 224744515 68 + 228333871 GCGTGGTCTTAGG---TACTAGTTGTACAATTATTTTACATTTGAAGA------------GGTAAACCTTTGGGTTCATAGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226108259 68 - 229942017 GCATGGTCTTAGG---TACTAGTTGTACAATTATTGTACATTTGAAGA------------GGTAAACCTTTGGGTTCATAGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139997312 68 - 143122389 GCGTGGTCTTAGG---TACTAGTTGTACAATTATTTTACATTTGAAGA------------GGTAAAGCTTTGGGTTCATAGGC i nomLeu3.chr5 C 0 I 409 s rheMac3.chr1 16716923 68 - 229590362 GCATGGTCTTAGG---TACTAGTTGTAGAATTCTTTCACATTGGAAGA------------GGTAAACCTTTGGGTTCATGGGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223476967 68 - 227556264 GCATGGTCTTAGG---TACTAGTTGTAGAATTCTTTCACATTGGAAGA------------GGTAAACCTTTGGGTTCATGGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16530563 68 - 220367699 GCGTGGTCTTAGG---TACTAGTTGTAGAATTCTTTCACATTGGAAGA------------GGTAAACCTTTGGGTTCATGGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82327926 68 + 85787240 GCATGGTCTTAGG---TACTAGTTGTAGAATTATTTCACATTGGAAGA------------GGTAAACCTTTGGGTTCATGGGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13990961 67 - 49578535 GGGTGGTCCTAGG---TACTAGTTGTAAAATGATTTTATATTTGAAGA------------GGTAAACCTTTGGG-TCACAGGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178634099 69 + 195471971 ----GGTTCGAAGACTTTCTAATCGT----------TGCCTTTGAGAGATGGGAGGCATTGGTAGGACTCTTAACCCATTAGC i mm10.chr1 C 0 C 0 e canFam3.chr7 36205806 160 + 80974532 I a score=378265.000000 s hg38.chr1_KI270759v1_alt 4627 137 + 425601 --------TTTCTAACTGATGTCATGGAGTGGTGGGAGGGTTTTGT--TTTCCCTTATCCATTAACTTTAT----TCTTAAAATAACAATATCACTAATAACATTTATggcatacttgtaagcacttcacatatattctctcactt-agcat s panTro4.chr1 224744583 137 + 228333871 --------TTTCTAACTGATGTCATGGAGTGGTGGGAGGGTTTTGT--TTTCCCTTATCCATTAACTTTAT----TCTTAAAATAACAATATCAATAATAACATTTATGGCATACTTGtaagcacttcacatatattctctcactc-agcat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226108327 134 - 229942017 --------TTTGTAACTGATATCATGGAGTGGTGGGAGGGTTTTGT--TTTCCCTTATCCATTAACTTTAT----TCTTAAAATAACAATATC---TATAACATTTATGGCATACCTCTAAGCACTTTACGTATGTTCTCTCACTT-AGCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139997789 136 - 143122389 --------TTTCTAAC-GATGTCATGGAGTGGTGGGAGGGTTTTGT--TTTCCCTTATCCATTAACTTTAT----TCTTAAAATAACAATATCAATAATAACATTTATggcatacttctaagcactttacatatattctctcactt-agcat i nomLeu3.chr5 I 409 C 0 s rheMac3.chr1 16716991 137 - 229590362 --------TTTCTAACTGATATCATGGAGTGGTGGGAGGGCTTTGT--TTTCCCTTATCCATTAACTTTAT----TCCTataataccaatatcaataataacatttatggcatacttctaagccctttacatatattctctcactt-agcct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223477035 137 - 227556264 --------TTTCTAACTGATATCATGGAGTGGTGGGAGGGCTTTGT--TTTCCCTTATCCATTAACTTTAT----TCCTATAATACCAATATCAATAATAACATTTATggcatacttctaagccctttacatatattctctcactt-agcct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16530631 137 - 220367699 --------TTTCTAACTGATATCATGGAGTGGTGGGAGGGCTTTGT--TTTCCCTTATCCATTAACTTTAT----TCCTGTAATACcaatatcaataataacatttatgGCATACTTCTAAGCCCTTTACCTATATTCTCTCACTT-AGCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82327994 137 + 85787240 --------TTTCTAACTGATATCATGGAGTGGTGGGAGGACTTTGT--TTCCCCTTATCCATTCACTTTAT----TCCTATAATACCAATATCAGTAATAACATTTATAGCATACTTCTAAGCCCTTTATATATATTCTCTCACTT-AGCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13991028 128 - 49578535 --------TTTCTAACTGATATCATGGAGTGGGGGGTGGGTTCTGT--TTTTCCTCATCCATTGTCTTTAT-------TGTAATAACAACGTTAACAATAAC----ATggcatacttctaagcactttgcacatgt--tctcactt-agcct i calJac3.chr19 C 0 C 0 s mm10.chr1 178634168 127 + 195471971 CTTAAGTAATCCTAAT--GTATCAATGAGCGATGGGAGGCGTTGGTAGGACTCTTAACCCATTAGCCTTAAGTAATCCTAATATATCAATG-----------------GTCATATT------cactttacacatagtagttcacttaaacct i mm10.chr1 C 0 C 0 e canFam3.chr7 36205806 160 + 80974532 I a score=818017.000000 s hg38.chr1_KI270759v1_alt 4764 230 + 425601 catgacaatattctaaggggactgaggcactcagagcttaggaaactcgttcaaggtcacctagctaggaaacgATGTGCTGTTTTCAAGGCCCTCATCTGAATAAAACTA-TCTTCCCTTTACTCTCAGCG-GTGAAAATGGGGGAGAGATCTGTATTGGAAGCTCATTCAGATGTTGCCTTCTTTTGCACTCGAAGGCT--------TTGCTCTCTGA----AGGCAGGAAGCAG------------------CAGGCAC s panTro4.chr1 224744720 230 + 228333871 catgacaatattctaaggggactgaggcactcagagcttaggaaactcgttcaaggtcacctagctaggaaacgATGTGCTGTTTTCAAGGCCCTCATCTGAATAAAACTA-TCTTCCCTTTACTCTCAGCG-GTGAAAATGGGGGAGAGATCTGTATTGGAAGCTCATTCAGACGTTGCCTTCTTTTGCACTCGAAGGCT--------TTGCTCTCTGA----AGGCAGGAAGCAG------------------CAGGCAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226108461 230 - 229942017 CATGACAATATTCTAAGGGAACTGAGGCACTCAGAGCTTAGGAAACTCCTTCAACGCCGCCTAACTAGGAAACGATGTGCTGTTTTCAAGGCCCTCATCTGAATAAAACTG-TCTTCCCTTTACTCTCAGCG-GTGAAAATGGGGGAGAGATCTGTATTGGAAGCTCCTTCAGATGTTGCCTTTTTTTGCACTCAAAGGCT--------TTGCTCTCTGA----AGGCAGGAAGCAG------------------CAGGCAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139997925 230 - 143122389 catgacaatattctaagggaactgaggcactcagagcttaggaaactcgttcaaggctgcccagctaggaaatgATGTACTGTTTTCAAGGCCCTCATCTGAATAAAACTA-TCTTCTCTTTACTCTCAGCG-GTGAAAATGGGGGAGAGATCTGTATTGGAAGCTCATTCAGATGTTGCCTTCTTTTGCACTTGAGGGCT--------TTGCTGTCTGA----AGGCAGGAAGCAG------------------CAGGCAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16717128 230 - 229590362 tgtgacaatattctaagggaactgaggcactcagagcttaggaaactcgttcaaggctgcctagctaggagatgATGTGCTGTTTTCAAGGCCCTCATCTGAATAAAACTG-TCTTCCATTTACTCTCAGCG-GTGAAAATGGGGGAGAGATCTGTATTGGAAGCTCATTCAGATGTTGCCTTCTTTTGCACTCAAAGGCT--------TTGCTCTCTGA----AGGCAGGAAGCAG------------------CAGGCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223477172 230 - 227556264 tgtgacaatattctaagggaactgaggcactcagagcttaggaaactcgttcaaggctgcctagctaggagatgATGTGCTGTTTTCAAGGCCCTCATCTGAATAAAACTG-TCTTCCATTTACTCTCAGCG-GTGAAAATGGGGGAGAGATCTGTATTGGAAGCTCATTCAGATGTTGCCTTCTTTTGCACTCAAAGGCT--------TTGCTCTCTGA----AGGCAGGAAGCAG------------------CAGGCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16530768 230 - 220367699 TGTGACAATATTCTAAGGGAACTGAGGCACTCAGAGCTTAGGAAACTCATTCAAGGCTGCCTAGCTGGGAGATGATGTGCTGTTTTCAAGGCCCTCATCTGAATAAAACTG-TCTTCCCTTTACTCTCAGCG-GTGAAAATAGGGGAGAGATCTGTATTGGAAGCTCATTCAGATGTTGCCTTCTTTCGCACTCAAAGGCT--------TTGCTCTCTGA----AGGCAGGAAGCAG------------------CAGGCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82328131 230 + 85787240 CGTGACAATATTCtaagggaactgaggcactcagagcttaggaaactcgttcaaggctgcctagctaggagatgATGTGCTGTTTTCAAGGCCCTCATCTGAATAAAACTG-TCTTCCATTTACTCTCAGCG-GTGAAAGTGGGGGAGAGATCTGTATTGGAAGCTCATTCGGATGTCGCCTTCTTTTGCACGCAAAGGCT--------TTGCTCTCTGA----AGGCAGGAAGCAG------------------CAGGCCC i chlSab2.chr25 C 0 I 109 s calJac3.chr19 13991156 228 - 49578535 cataacagtattctaagggcacggagg--ctcagagcttaggaatcttgttcaaggccacctcgctaggaaatgATGTGGTGTCTTCAAGGCCCTCATTTGAATAAAACTGACCTTCCATTTACTCTCAGTG-GTAAAGACGGAGGCGAGATCTGTATGGGACGTGAATTCTGGTGTTGCCTCCTTTTGCACTCTGAGGCT--------TTGCTCTCTGC----AGGAAGGAGGCA-------------------CAGGAGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178634295 248 + 195471971 tataacgatattctaagggaa--------gtTAGTGGCCAGCA---TTGTTTAAGGTCTCATAGTTAGAAAATGATGTAATGTTTTCAAGACCCAGATCTGAATAAAGCAGGCCATCCTCTGAGTCTTATTGTGAAGAAATAGGGCAGGGATCCATCTCGGGAGATAATCCAGACGTAGCTTTCTTTTGTAC-CAAAGACTTCTCTCTCTTTCTCTCTGA--TTAGGTGGGGGGAGGGGTGTATGGGGAGCCTGACAGACAT i mm10.chr1 C 0 C 0 s canFam3.chr7 36205966 227 + 80974532 CATTACAATATTCtaagggaattggggcactcagaggttaggaag-tcgtccaaggtcacaaaactaggaaatgacgtagtgttttcagggccctaatctgagtAAAGCTGATCTTCCATTTGCTCTCAAGG-ATGAAAGTAGGAGAG-GACTCATTGGGGAGGATCACTCAGGTCTTGCCTCC--TCACACTTCAGG-----------TTCCTCTCTGTCTCTGAGAAGGAGGGA-------------------CAGGCAC i canFam3.chr7 I 160 C 0 a score=2234827.000000 s hg38.chr1_KI270759v1_alt 4994 716 + 425601 GTGTGCAGGGAAGGCTGTGTATGTGGCATGTGCAGGCAGCAGCAGCAAC-GCGGGACGATGGGGAGAGAGCCCAGGGGAGGGAGGATGCCTGCAGAAGCGGCTGTGATGTGT-GGGAAGCCCCGCTGGGCCGGCACTGTGGAAAGGTGACCTGCAGAGCCACAGCTGCAAATG---------------AACCACTAAT-TTTCCCATCTCTGCTTGCAATTTACAAAGCACTTTCCTGGTGTCATGAGTAGCTCCCAAGTATCAGAGCAG---GGAT---TGAAACTTAAGTTGTTTGACGCTACACTC--TGATTTCCTCACCCCACCTCACTGTCTTGCCAGTTCCAACTGTACCCCTCAGGAATTTCTATC-AGGAGTCTGTGTCAACATCAGCATGAAGCTGAAGAAGGAGAAAGGAAATGGGGCAACAAAG----CACACAGATGTTCCTAAAAAGCAAAAGCGGAAGAGAGAAGCTAGACTCGCCTGTC-------TCTGGTTT-------TTCTCACCGCCTGATTGTTCCTTTCAGATGACCCGCATCTCTCGGAG-CTGACCTCAGCTCAGCAAGGGTGCCTGTGACCCATGGAGCAGTGGCCA----------CTATCTCTGC-ATTGTGGGAGGGTGGTCCGTGTTGGGTCTGCAGGGTCGTTGTCACAGCGATGAATGTGTAGATCTGTGCTTGCTGAAGC----------------TCAGGCTGGTCGCTGTCTTGTCATCGTCTCCT----GTTACACAGCTTTCAGGCTGC-TTTT-TTG s panTro4.chr1 224744950 711 + 228333871 GTGTGCAGGGAAGGCTGTGTATGTGGCATGTGCAGGCAGCAGCAGCAAC-GCGGGACGGTGGGGAGAGAGCCCAGGGGAAGGAGGACGGCTGCAGGAGCGGCTGTGATGTAT-GGGAAGCCCCGCTGGGCCGGCACTGTGGAAAGGTGACCTGCAGAGCCACAGCTGCAAGTG---------------AACCACTAAT-TTTCCCATCTCTGCTTGCAATTTACAAAGCACTTTCCTGGTGTCATGAGTAGCTCGCAAGTATCAGAGCAG---GGAT---TGAAACTTAAGTTGTTTGACGCTACACTC--TGATTTCCTCACC-----TCACTGTCTTGCCAGTTCCAACTGTACCCCTCAGGAATTTCTATC-AGGAGTCTGTGTCAACATCAGCATGAAGCTGAAGAAGGAGAAAGGAAATGGGGCAACAAAG----CACACAGATGTTCCTAAAAAGCAAAAGCGGAAGAGAGAAGCTAGACTCGCCTCTC-------TCTGGTTT-------TTCTCACCGCCTGATCGTTCCTTTCAGATGACCCGCGTCTCTCGGAG-CTGACCTCAGCTCGGCAAGGGTGCCTGTGGCCCATGGAGCCGTGGCCA----------CTATCTCTGC-ATTGTGGGAGGGTGGTCCGTGTTGGGTCTGCAGGGTCGTTCTCACAGCGATGAATGTGTAGATCTGTGCTTGCTGAAGC----------------TCAGGCTGGTCGCTGTTTTGTCATCGTCTCCT----GTTACGCAGCTTTCAGGCTGC-TTTT-TTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226108691 704 - 229942017 GTGTGCAGG-----------CTGTGGCCTGTGCAGGCGGCAGCAGCAAT-GTGGGACGATGGGGAGAGAGCCCAGGGGAGGGAGGACGTCTGCAGGAGCGGCTGTGATGTGT-GGGAAGCCCCGCTGGGCCAGCACTGTGGAAAGGTGACCTGCAGAGCCACAGCTGCAAATG---------------AAACACTAAT-TTTCCCATCTCTGCTTGCAGTTGACAAAGCACTTTCCTGGTGTCATGTGTAGCTCGCAAGTATCAGAGCAG---GGAT---TGAAACTTACGTTGTTTGACGCTACACTC--TGATTTCCTCACCCCACCTCACTGTCTTGCCAGTTCCAACTGTACCCCTCAGGAATTTCTATC-AGGAGTCTGTGTCAACATCAGCATGAAGCTGAAGAAGGAGAAAGGAAATGGGGCAACAAAG----CACACAGATGTTCCTAAAAAGCAAAAGCGGAAGAGAGAAGCTAGACTCGCCTCTC-------CCTGGTTT-------TTCTCACCGCCTGATTGTTCATTTCAGATGACCCGCATCTCTCGGAG-CTGACCTCAGCTCAGCAAGGGTACCTGTGG-CCATGGAGCAGTGGCCA----------CTATCTCTGC-ATTGTGGGAGGGTGGTCCGTGTTGGGTCTGCAGGGTCGTTCTCACAGCGATGAATGTGTAGATCTGTGCCTGCTGAAGC----------------TCAGGCTGGTCGCTATTGTGTCATCGTCTCCT----ATTACGCAGCTTTCAGGCTGC-TTTT-TTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139998155 697 - 143122389 GTGTGCAGGGAAGGCTGTGTATGTGGCCTGTGCAGGCAGCAGCAGCAAC-GCGGGACGATGGGGAGAGAGCCC-GGGGAGGGAGGAGATCTGCAGGAGCGGCTGTGATGTGT-GGGAAGCCCCGCTGGGCTGGCACTGTGGAAAGGTGACCTGCAGAGCCACAGCTGCAAATG---------------AACCACTAAT-TTTCCCATCTCTGCTTGCAATTTACAAAGCACTTTCCTGGTGTCATGCATAGCTCGCAAGTATCAGAGCAG---GGAT---TGAAACGGAAGTTGTTGGACGCTACACTC--TGATTTCCTCACCCCACCTCACTGTCTTGCCAGTTCCAACTGTACCCCTCAGGAATTTCTGTC-AGGAGTCTGTGTCAACATCAGCATGAAGCTGAAGAAGGAGAAAGGAGATGGGGCAACAAAG----CACACAGATGTTCCTAAAAAGCAAAAGCGGAAGAGAGAAGCTAGACTCGCCTCTC-------CCTGGTTT-------TTCTCACTGCCTGATTGTTCCTTTCAGATGATCCGCATCTCTCGGAG-CTGACCTCAGCTCAGCAAGGGTGCCTGTGACCCATGGAGCTATGGCCA----------CTATCTCTGC-ATTG------------------TGGGTCTGCAGGGTCGTTCTCGCAGCGATTAACGTGTAGATCTGTGCTTGCTGAAG-----------------TCAGGCTGGTCACTCTTGTATTATCGTCTCCT----GTTACGCAACTTTCAGGCTGCGGTTT-TTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16717358 720 - 229590362 GTGTGCAGTGAAGCCTGTGTATGTGGCGTGTGCAGGCAGCAGCAGCAAC-CCGGGATGGTGGGGAGAAAGCCCATGGGAGGGGGGACGTCTGCGGGAGCGGCTGTGATGTGT-GCAAAGTCGCGCTGGGCTGGCACTGTGGAAAGGTGACCTGCAGAGCTGCAGCTGCAAATG---------------AACCACTAAT-TTTCCCATCTCTGCTTGCAGTTTACAAAGCactttcctggtgtcatgcgtagctcacaagtatcagagcag---ggat---tgaaatttaagttgtttgatgctcaactc--tgatttcctcaccccacttcactgtcTTGCCAGTTCCAACTGTACCCCTCAGGAATTTCTATC-AGGAATCTGTGTAAACATCAGCGTGAAGCTGAAGAAGGAGAAAGGAAATGGGGCAGCAAAGTACACACACAGATGTTCCTAAACAGCCAAGGCGGAAGAGAGAAGCTAGACTGGTCTCTC-------CCCGGTTT-------TTCTCACCGCCTGATTGTTCCTTTCAGACGACCCGCATCTCTTGGAG-CTGACCTCAGCTCAGCAAGGATGCCTGTGACCCATGCAGCAATGGCCA----------CTATCTCTGC-ATTGTGGGAAGGTGATCCGTGTTGGGTCTGCAGGGTCGTTCTCATAGCAATGAATGTGTAGATCTGTGCTTGCTGAAGC----------------CCGGGCTGGTCCCTCTTGTATCATCGTCTCCT----ATTACGCAGCTTTCAGGCTGC-TTTT-TAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223477402 720 - 227556264 GTGTGCAGTGAAGGCTGTGTATGTGGCGTGTGCAGGCAGCAGCAGCAAC-CCGGGATGGTGGGGAGAAAGCCCATGGGAGGGGGGACGTCTGCGGGAGCGGCTGTGATGTGT-GCAAAGTCGCGCTGGGCTGGCACTGTGGAAAGGTGACCTGCAGAGCTGCAGCTGCAAATG---------------AACCACTAAT-TTTCCCATCTCTGCTTGCAGTTTACAAAGCACTTTCCTGGTGTCATGCGTAGCTCACAAGTATCAGAGCAG---GGAT---TGAAATTTAAGTTGTTTGATGCTAAACTC--TGATTTCCTCACCCCACTTCACTGTCTTGCCAGTTCCAACTGTACCCCTCAGGAATTTCTATC-AGGAATCTGTGTAAACATCAGCGTGAAGCTGAAGAAGGAGAAAGGAAATGGGGCAGCAAAGTACACACACAGATGTTCCTAAACAGCCAAGGCGGAAGAGAGAAGCTAGACTGGTCTCTC-------CCCGGTTT-------TTCTCACCGCCTGATTGTTCCTTTCAGACGACCCGCATCTCTTGGAG-CTGACCTCAGCTCAGCAAGGGTGCCTGTGACCCATGCAGCAATGGCCA----------CTATCTCTGC-ATTGTGGGAAGGTGATCCGTGTTGGGTCTGCAGGGTCGTTCTCATAGCAATGAATGTGTAGATCTGTGCTTGCTGAAGC----------------CCGGGCTGGTCCCTCTTGTATCATCGTCTCCT----ATTACGCAGCTTTCAGGCTGC-TTTT-TAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16530998 720 - 220367699 GTGTGCAGTGAAGGCTGTGTATGTGGCGTGTGcaggcagcagcagcaac-ccGGGATGGTGGGGAGAGAGCCCGTGGGAGGGAGGACGTCTGTGGGAGCGGCTGTGATGTGT-GCGAAGTCACGCTGGGCTGGCACTGTGGAAAGGTGACCTGCAGAGCTGCAGCTGCAAATG---------------AACCACTAAT-TTTCCCATCTCTGCTTgcaatttacaaagcactttcctGGTGTCACGCGTAGCTCGCAAGTATCAGAGCAG---GGAT---TGAAATTTAAGTTGTTTGATGCTGAACTC--TGATTTCCTCACCCCACTTCACTGTCTTGCCAGTTCCAACTGTACCCCTCAGGAATTTCTATC-AGGAATCTGTGTAAACATCAGCGTGAagctgaagaaggagaaaggaaataggGCAGCAAAGTACACACACAGATGTTCCTAAACAGCCAAGGCGGAAGAGAGAAGCTAGACTGGCCTCTC-------CCTGGTTT-------TTCTCACCGCCTGATTGTTCCTTTCAGATGACCTGCATCTCTTGGAG-CTGACCTCAGCTCAGCAAGGGTGCCTGTGACCCATGCAGCAATGGCCA----------CTATCTCTGC-ATTGTGGGAGGGTGATCTGTGTTGGGTCTGCAGGGTCGTTCTCATAGCAATGAATGTGTAGATCTGTGCTTGCTGAAGC----------------CTGGGCTGGTCCCTCTTGTATCATTGCCTCCT----ATTACGCAGCTTTCAGGCTGC-TTTT-TAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82328470 707 + 85787240 GTGTGCAGGGAAGGCTGTGTAGGTGGCGTGTGCAGGCAGCAGCAGCAAC-CCGGGATGGTGGGGAGAGCGCCCGTGGGAGGGAGGACGTCTGCGGG------TGTGATGTGTGGGGAAGTCGCGCTGGGCTGGCACTGTGGAAAGGTGACCTGCAGAGCTGCAGCTGCAAATG---------------AACCACTAAT-TTTCCCATCTCTGCTTGCAATTTACAAAGCACTTTCCTGGTGTCATGCGTAGCTCGCAAGTATCAGAGCAG---GGAT---TGAAATTTAAGTTGTTTGATGCTAAACTC--TGATTTCCTCACCCCACTTCACTGTCTTGCCAGTTCCAACTGTACCCCTCAGGAATTTCTATC-AGGAATCTGTGTAAACATCAGCGTGAAGCTGAAGAAGGAGAAAGGAAATCGGGCAGCAAAGTACACACACAGATGTTCCTAAACAGCCGAGGCGGAAGAGAGAAGCTAGACTCGCCTCTC-------CCTGGTTG-------TTCTCACCGCCCGATTGTTCCTTTCAGATGACTCACATCTCTTGGAG-CTGACCTCAGCTCAGCAAGGGCGCCTGTGACCCATGGAGCAATGGCCA----------CTATCTCTGC-ATTGTGGGAGGGTGATCCGTGTTGGGTCTGCAGGGTCGTTCTCATAGCAATGAATGTGTAGATCTGTGCTTGCTGAAGC----------------CCGGGCTGGTCCCTCTTGTATCATCGTCTCCT----ATTACGCAGCTTTCAGGCTG---------- i chlSab2.chr25 I 109 C 0 s calJac3.chr19 13991384 683 - 49578535 GTATGCAGGGGAGGCTGG--ATGTGGCGTGTGCAGGTAGCAGCAGCAAC-CCGAGATGATGGCGAGGGAG-CCGTGGGAGGGAGG-CGTCTGCAGGAGCGGCTGGGATGTGT-G-GAAGCCACGCTGGGCTGGTACTGTGGCAAGGTGACCTGCAGAGCAGCAGCTGCAAAGG---------------AACCACTCAT-TTTCCCGTCTCTGCTTGCGATTTCCAAAGCactttcctggtgtcacgcggagctcacaagcgtcagagcag---ggat---tgagactgaagttgtctgacgctaaactc--tgATTTCCTCACAGCACCTCACTGTCTTGCCAGTTGCCACTGTA-CCCTCAGGAATGCT--TC-AGGAGTCTGTGT-AACATCAGCGTGAGGCCCAAGTAGGAGAAAGGATACGGGGCGACAG------CACACAGATGTTCCTGAGAAGCAGAAGTGGAC-AGAGAAGCTGGACGCGCCTCTC-------CCTGCTTG-------TCCTCACGGCCTGACTATTCCTTTCAGATGACCTGCCTCTCTTGGAG-CTGACCTTGGCTCAGCAAGGGTGCCCGTGACCCATGGCACAATGGCCA----------CTATCTCTGC-ATTGTGGGAGGGTGGTCCGTGCTGGGTCTGCAGGGTCATTCTCACAGCGATGAATGTGTCGGTCTGGG--------------------------------------ACTCTTATGTCATCGTCTCCT----ATCACACAGCGTTCAGGCCAC-TCTTGTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178634543 682 + 195471971 GTGTGAGGCAGAGGCTGTTTATATATCACATGCAGTCTGTGGCTG--AC-CCAAAGAGATGGGGAGCAAGCTCACAGGAAAGAGACTATCTGCAGGAGCCTCTGAGATGTGT-GGGAATCCATGCCCGGGGGAAACTG-----------CCCGCGG---CGCGGCTGCAAATG---------------AACTGTTCA--TTTCCCACAGCCTCTTGCAATTTACCAGTCATTCTCCCAGCGTCACGCAAAGCT-GCGAGGATCAGAACAGGAAGGAC---TGAAGCCCCGGTTGTTTGACGCTCCTC-C--GGCTTTCCTCACGGCACCTGCGTTTCTCACCAGTTCCA--TATGCACCTCAGGAATTTCTGCT-GTGCGGTTGTCTAAATACCAGCATGCAGCCAGAAAGGGAGAGGAGAGCTGGGGTCCTGAGG----CATGCAGGCATTCTCAGAGAGCACATG-GGAAGCCAAGAGCTAGACTGGCTTTGCAGCCACGTGTAGCTT-------TTCTTACCACCACCCCACCTTTTCTATATGTACCCCACTTCCCTCAGTCCAGCCTCAGCTCAGCA--GGTGCTTGCGTGACGTGGAG------------------------------------------TGGCCCTCAGAGGGTCTGGAGG----TTCTCATGATGA-GAATGCAAAAATGTGTGCTTACTAAAGCCATGGGTGCTGT----TTAGGCTGGTGCCCCTTGTGGCATCCTCCCCTCCCCCTTAACCATTTCCCAAACAAC-TCTT-T-G i mm10.chr1 C 0 C 0 s canFam3.chr7 36206193 718 + 80974532 GTGTGCAGCATTGGTTGTTGATGTGGCCTGAGCAGTAAGTGGCAGTGGCAGCAGGATGGCAGTGAAAGAGCTCACCAGAAGGGGGGCACCTGCAGGAAC-----TGTTGTGT-GAGGACCCTC---CAGCTGGCTCTGCGGAAGGGTGTCATGCAGAG---TAGTTGCAAAGGAAACGTGCTCACAGCAACCACTGATATGCCCCAGC----CACGAAATTTAGAAGGCACG-TCCTGGGGTCATGCGTAGCCCACAAGGACCAGAGCAG---GGATGGCCGGAA----AGTTGTTTGATGCTAAGTTCTGTGCTTTCCTCGCGATGCT--GCTCCCTCACCAGTTTTGTCTGCG--CCTCGGGGATCTCTACCTAGGGCTCTATTT------------GAGGCTGAAGAAG------AGAAATGGGTCAAGGAG-----CACAGGCAGGTTCT------GGAGAAGGGGGAGAGAGAGGCTAGGACAACTTCTC-------CCAATTTGGACATCATTCCCATCTCCTGGCTTTTCGTTTTCGAGTATCCACGT-TCTGGGATCCTGACCTCAGCTCACCAGGAGTGCTTGTGACCTGTGGACCAATGCCCAGAGTGGGTCCACATTTCTGTGACTATGGCAGGGTGGCACGCCTTGGGTCTGGAGGGT-GATCCCACTGCCATCAGTG-----ACCTGTGCTTAATAAAGCTGCCTCTGAAGTTGAGGCTGGTTGGTCACCCAAGTGTTGTCAACCCCT----CTGCAACAGTGTTCTGTCTCC-TTGC-CTG i canFam3.chr7 C 0 I 2 a score=43521.000000 s hg38.chr1_KI270759v1_alt 5710 32 + 425601 GGGAAGTTAGACTCGCCTGCTCTTTTTTGGGG s panTro4.chr1 224745661 32 + 228333871 GGGAAGTTAGACTCGCCTGCTCTTTTTTGGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226109395 32 - 229942017 GGGAAGTTAGACTTGCCTGCTCTTTTCTGGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139998852 10 - 143122389 GGGAAGTTAG---------------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16718078 32 - 229590362 GGGAAGTTAGACTTGCCTACTCTTTTTAGGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223478122 32 - 227556264 GGGACGTTAGACTTGCCTACTCTTTTTAGGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16531718 32 - 220367699 GGGAAGTTAGACTTGCCTACTCTTTTTTGGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82329177 11 + 85787240 ---------------------CTTTTTTGGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13992067 31 - 49578535 GGGATGTTAGACTTGCCAGCTCTGTCCAGAA- i calJac3.chr19 C 0 C 0 s mm10.chr1 178635225 30 + 195471971 TGGGTGCCCATCTCGCCTGCTATATTGGAG-- i mm10.chr1 C 0 C 0 e canFam3.chr7 36206911 2 + 80974532 I a score=1414162.000000 s hg38.chr1_KI270759v1_alt 5742 508 + 425601 AAGTTCCACCTCACTGCagccgggtatggtgg--tttgctcctgtagtcctagctacttgggaggctgaggcaggaggattgcttgagccaggagttcgaggctgcagtgagcagagatcacaccactgcactccagcttgggtgacagagtgagaccctgtctctaaaataaaataaaataaaaataataaaTAAAT-----AAATAAATCACCCCTTggccaggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttcgagaccagcctgggcaacatggggaaaccctgtctctaccaaaagtacaaaaattagcctggtg---tggcaggcgcctgtaatctcagctactcaggaggctgaggcaggagaacggcttgaacccaggagacagaggttgcagtgagccgagatcatgccattgcactgcagcctgggcgaca-gagcaagactccatctcag-------------aaaaagaa-acaaaaa s panTro4.chr1 224745693 504 + 228333871 AAGTTCCACCTCACTGCagccgagtatggtgg--tttgctcctgtagtcctagctacttgggaggctgaggcaggaggatcgcttgagccaggagttcgaggctgcagtgagcagagattacaccactgcactccagcttgggtgacagagtgagaccctgtctctaaaataaaataaaataaaaATAATAAATAAAT-----AAAT----CACCCCTTggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcgcctgaggtcaggagttcgagaccagcctgggcaacatggggaaaccccgtctctaccaaaagtacaaaaattagcctggtg---tggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaacggcttgaacccaggagacggaggttgcagtgagccgagatcatgccattgcactgcagcctgggtgaca-gagcaagactccatctcag-------------aaaaagaa-aaaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226109427 508 - 229942017 AAGTTCGACCTCACTGCagccgagtgtggtgg--tttgctcctgtagtcctagctacttgggaggctgaggcaggaggatcgcttgagccaggtgttcgaggctgcagtgagcagagatcacaccactgcactccagcttgggtgacagagtgagaccctgtctctaaaataaaataaaataaaaATAATAAATAAAT-----AAATCAATCACCCCTTggccaggcgcagtggctcacacctgtaatcccagcactttgggaggccaaggtgggtgaatcatctgaggtcaggagttcgagaccagcctgggcaacatggggaaaccccgtctctaccaaaagtacaaaaattagcctggtg---tggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatggattgaacccaggagacggaggttgcagtgagccgagatcatgccattgcactgcagcctgggcgaca-gagcgagactctatctcaa-------------aaaaagaa-aaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139998862 496 - 143122389 -------ACCTCCCTGAagccaagtatggtgg--tttgctcctgtagtcctagctatctgggaggctgagggaggaggatcgcttgaggcaggagttcgagactgcagtgagcagagatcacaccaccacactccagctcgggtgacagagtgagaccctgtctctaaaataaaataaaataaaaataataaaTAAAT-----AAAT----CACCCCTTggccaggcgcagtggctcacacctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagtttgagaccagcctgggcaacatggggaaaccccgtctctaccaaaagtacaaaaattagcctggtg---tggcaggcgcctgtaatcccagctactcaggagcctgaggcaggagaatcgcttgaacccaggagacggaggttgcagtgagccgagatcatgccattgcactccagcctgggcgaca-gagtgagactccatctcag-------------aaaaagaa-a-aaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16718110 513 - 229590362 AAGTTAGACCTCCCTGCagctgagtatggtgg--tttgctcctgtattcccggctacttgggaggctgaggcaggaggatcacttgagcccggagttcgaggctgcagtgagcagagatcacaccattgcactccagcttgggtgacagagtgagaccctgtctctaaaataaaataaaataaaaataaaaAATAAATTTAAAAAAT----CACCCCTTggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagtttgagaccagcctgggcaacatggggaaaccccatctctaccaaaagtacaaacgttagcctggtgtgatggcgggcgcctgtgaccccagctacttggaaggctgaggca-gagaattgcttgaacctgggaggcagagattgcagtgagtcgagattgcactactgcactccagactgggcgaca-gagtgagactccatctcaa-----------ataaaaggag-aaaaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223478154 514 - 227556264 AAGTTAGACCTCCCTGCagctgagtatggtgg--tttgctcctgtattcccggctactcgggaggctgaggcaggaggatcacttgagcccagagttcgaggctgcagtgagcagagatcacaccattgcactccagcttgggtgacagagtgagaccctgtctctaaaataaaataaaataaaaataaaaaaTAAATTTAAAAAAT----CACCCCTTggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagtttgagaccagcctgggcaacatggggaaaccccatctctaccaaaagtacaaacgttagcctggtgtgatggcgggcgcctgtgaccccagctacttggaagactgaggca-gagaattgtttgaacctgggaggcagagattgcagtgagtcgagattgcactactgcactccagactgggcgaca-gagtgagactccgtctcaa-----------ataaaaggagaaaaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16531750 514 - 220367699 AAGTTAGACCTCCCTGCAGCCGAGTATGGTGG--tttgctcctgtagtcccagctactcgggatgctgaggcaggaggatcacttgagcccggagttcgaggctgcagtgagcagagatcacaccattgcactccagcttgggtgacagagtgagaccctgtctctaaaataaaataaaataaaaataaaaaataaatttaaaaaat----cacccgttggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagtttgagaccagcctgggcaacatggggacaccccacctctaccaaaagtataaaaattagcctggtgtgatggcgggcgcctgtgaccccagctacttggaaggctgaggca-gagaattgcttgaacctgggaggcagagattgcagtgagtcgagattgcaccactgcactccagcctgggcaaca-gagtgagactccgtctcaa-----------ataaaaggagaaaaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82329188 515 + 85787240 AAGTTAGATCTCCCTGCagccgagtatggtggtttttgctcctgtagtcctggctactcaggaggctgaggcaggaggatcacttgagcccggagttcaaggctgcagtgagcagagatcacaccactgcactccagcttgggtgacagagtgagaccctgtctctaaaataaaataaaataaaaataaaaaaTAAATTTAAAAAAT----CACCCCTTggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagttcgagaccagcctgggcaacatggggaaaccccatctctaccaaaagtataaaagttagcctggtgtgatggcgggcgcctgtgaccccagctacttggaaggctgaggca-gagaattgcttgaacctgggagacagagattgcagtgagtcgagattgcaccactgcactccagcctgggcgcca-gagtgagactccatctcaa-----------ataaaaggag-aaaaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13992098 503 - 49578535 -------ATCACCCCAtagctgggtatggtgg--tttgctcctatagtcccagctactcgggaggctgaggcaggaggatcacttgagccaggagttccaggcttcagtgagcagagctcacagcactgcactccagcttgggtgacaaagtgagaccctgtctc-------aaataaaataaaaataa-aaata--------aaaT----CATCCCTTggcctggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtgaatcacctgaggttgggagtttgagaccagcctgacccacgtggagaaaccccgtctctactaaaaatacaaaaatttgtcaggcgtggtggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgtggtgagccgagatcacgtcattgcactccaggctgggcaacaggagcaaaagtctgactcaaaaaaaaaagaaagaaagaaag-aaaaaaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178635255 0 + 195471971 C e canFam3.chr7 36206911 2 + 80974532 I a score=20880.000000 s hg38.chr1_KI270759v1_alt 6250 5 + 425601 aaTCA s panTro4.chr1 224746197 5 + 228333871 aaTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226109935 5 - 229942017 aaTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139999358 5 - 143122389 aaTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16718623 5 - 229590362 aaTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223478668 5 - 227556264 aaTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16532264 5 - 220367699 aatca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82329703 5 + 85787240 aaTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13992601 5 - 49578535 AATCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178635255 5 + 195471971 AATCA i mm10.chr1 C 0 C 0 e canFam3.chr7 36206911 2 + 80974532 I a score=2422638.000000 s hg38.chr1_KI270759v1_alt 6255 641 + 425601 -CCGTTTAACTCAGAATCAGCCACGCTGAATTGAGGTGAGGTTTTATGCATATCA------GATTGAAGACCTCCTCCGGGGAGTGGTAGGCTGATGGCTTAGTCATCCTATAAAGAGCCCAGCATCTGACTGCACAGCTGGGTCTACCTACAGCATGGAGATGGCTATCTGGGAATAATGGGCACTAGAATTGGAGGATCCTGATGAACCACTTCCTGGCCCCTTGCTTGTGCCACCTCCCTTCCCGCCAGGTAAATATTGCTTAGACACCCAGCTTCTGATTAAAGCCACATGATGGAACTTGTCCTAAGGATGCAACTGATGGCCCGTGTCAGCTTGTTGGAGTTAAAAAATATATTTTAATTTGTTTAGCTCTCTGGGGAAATTATCTGAGCCTGCATGTGATAATCAACTTTCACATGAGCTTTCAAGAGACCTGAAATGATTTGAGCAAC-AAAATGAGATTTTTAATCTACATAAATACAGGAGTCGTTTGCCTC-----------TCTTTTTGTGTGTA-------TGCGAGAGGAGGGGAGCTTAAAACAATTCTAATTCATTCCTTTTCTTCT-CCCCTAGGACA--CTCATTAGCAATGGTAGGAAAATGGTCACAGGAGTGGTACCTTGCCTCAcattctcacacacattttcccttt s panTro4.chr1 224746202 641 + 228333871 -CCGTTTAACTCAGAATCAGCCACGCTGAATTGAGGTGAGGTTTTATGCATATCA------GATTGAAGACCTCCTCCGGGGAGTGGTAGGCTGATGGCTTAGTCATCCTATAAAGAGCCCAGCGTCTGACTGCACAGCTGGGTCTACCTACAGCATGGAGATGGCTATCTGGGAATAATGGGCACTAGAATTGGAGGATCCTGATGAACCACTTCCTGGCCCCTTGCTTGTGCCACCTCCCTTCCCGCCAGCTAAATATTGCTTAGACACCCAGCTTCTGATTAAAGCCACATGATGGAACTTGTCCTAAGGATGCAACTGATGGCCCGTGTCAGCTTGTTGGAGttaaaaaatatattttaatttGTTTAGCTCTCTGGGGAAATTATCTGAGCCTGCATGTGATAATCAACTTTCACATGAGCTTTCAAGAAACCTGAAATGATTTGAGCAAC-AAAATGAGATTTTTAATCTACATAAATACGGGAGTCGTTTGCCTC-----------TCTTTTTGTGTGTA-------TGCGAGAGGAGGGGAGATTAAAACAATTCTAATTCATTCCTTTTCTTCT-CCCCTAGGACA--CTCATTAGCAATGGTAGGAAAATGGTCACAGGAGTGGTACCTTGCCTaacattctcacacacattttcccttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226109940 639 - 229942017 -CC-TTTAACTCAGAATCAGCCACGCTGAATTAAGGTGAGGTTTTACGCATATCA------GATTGAGGACCTCCTCCGGGGAGTGGTAAGCTGATGGCTTAGTCATCCTATTAAGAGTGCAGCGTCTGACTGCACAGCTGGGTCTACCTACAGCATGGAGATGGCTATCTGGGAATAATGGGCACTAGAATTGGAGGATCCTGATGAACCACTTCCTGGCCCCTTGCTTGTGCCACCTCCCTTCCTGCCAGGTAAATATTGCTTAGACACCCAGCTTCTGATTAAAGCCACATGATGGAACTTGTCCTAAGGATGCAACTGATGGCCCGTGTCAGCTTGTTGGAGttaaaaaatatattttaatttGTTTAGCTCTCTGGGGAAATTATCTGAGGCTGCATGTGATAATCAACTTTCACATGAGCTTTCAAGAAACCTGAAATGATTTGAGCAAC-AAAATGAGATTTTTAATCTACATAAATACAGGAGTCATTTGCCTC-----------TCTTTTTGTGTATA-------TGCGAGAGGAGGGGAGATTAAAACAATTCTAATTCATTCC-TTTCTTCT-GCCTTAGGACA--CTCATCAGCAATGGTAGGGAAATGGTCACGGGAGTGGTACCTCGCCTaacattctcacacacattttcccttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 139999363 641 - 143122389 -CCCTTTAACTCAGAATCAGCCACGCTGAATTGAGGTGAGGTTTTATGCATATCA------GATTGAGGACCTCCTCTGGGGAGTGGTAGGCTGATGGCTTAGGCATCCTATAAAGAGCCCAGCATCTGACTGCACAGCTGGGTCTACCTACAGCATGGAGATGGCTATCTGGGAATAATGGGCACTAGAATTGGAGGATCCTGATGAACCACTTCCTGGCCCCTTGCTTGTGCCACCTCCGTTCCCGCCAGGTAAATATTGCTTAGATACCCAGCTTCTGATTAAAGCCACATGATGGAACTTGTCCTAAGGATGCAACTGATGGCCCGTGTCAGCTTGTTGGAGTTAAAAAATATATTTTAATTTGTTTAGCTCTCTGGGGAAATTAGCTGAGCCTGCATGTGATAATCAACTTTCACATGAGCTTTCAAGAAACCTGAAATGATTTGAGCAAC-AAAATGAGATTTTTAATCTACGTAAATACAGGAGTCATTTGCCTC-----------TCTTTTTGTGTGTG-------TGCGAGAGGAGGGGAGATTAAAACAATTCTACTTCATTCCTTTTCTTCT-CCCCTAGGACA--CTCATTAGCAATGGTAGGAAAATGGTCATAGGAGTGGTACCTCGCCTaacattctcacacacattttcccttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16718628 637 - 229590362 -CCCCTTAACTCAGAATCAGCCACGCTGAACCGAGGTGAGGTTTTATGCATATCA------GATTGAGGACCTTCTCTGGGGGGTGGTAGGCTGATGGCTTAGTCATCCTGTAAAGAGCCCAGCATGTGAC-GCACAGCTGGGTCTACCTACAGCACGGAGATGGCTATCTGGGAATCATGGGCACTAGAATTGGAGGATCCTGATGAACCACTTCGTGGCCCCTTGCTTGTACCACCTCCCTTCCCGCCAGCTAAATATTGCTGAGATACCCAGCTTCTGATTAAAGCCGCATGATGGAACTTGTCCTAAGGATGCAACTGATGGCCCGTGTCAGCTTGTTGGAGttaaaaaatatattttaatttGTTTGGCTCTCTGGGGAAATTATCTGAGCCTGCATGTGATAATCAACTTTCACATGAGCTTTCAAGAAACCTGAAATGATTTGAGCAAC-AAAATGAGATTTTTAATCTACATAAATATAGGAGTCGTTTGCCTC-----------TCTGTTTGTGTGTG-------TGCGAGAGGAGGGGAGATTAAAACAATTCTAACTCATTCC-----TTCT-CCTCTAGGACACTCTCATTAGCAACGGTAGGAAAATGGTCATAGGAGTGGTACCTTGCCTaacattctcacgcacattttcccttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223478673 637 - 227556264 -CCCCTTAACTCAGAATCAGCCACGCTGAACCGAGGTGAGGTTTTATGCATATCA------GATTGAGGACCTTCTCTGGGGGGTGGTAGGCTGATGGCTTAGTCATCCTGTAAAGAGCCCAGCATGTGAC-GCACAGCTGGGTCTACCTACAGCACGGAGATGGCTATCTGGGAATCATGGGCACTAGAATTGGAGGATCCTGACGAACCACTTCGTGGCCCCTTGCTTGTACCACCTCCCTTCCCGCCAGCTAAATATTGCTGAGATACCCAGCTTCTGATTAAAGCCGCATGATGGAACTTGTCCTAAGGATGCAACTGATGGCCCGTGTCAGCTTGTTGGAGTTAAAAAATATATTTTAATTTGTTTGGCTCTCTGGGGAAATTATCTGAGCCTGCATGTGATAATCAACTTTCACATGAGCTTTCAAGAAACCTGAAATGATTTGAGCAAC-AAAATGAGATTTTTAATCTACATAAATATAGGAGTCGTTTGCCTC-----------TCTGTTTGTGTGTG-------TGCGAGAGGAGGGGAGATTAAAACAATTCTAACTCATTCC-----TTCT-CCTCTAGGACACTCTCATTAGCAACGGTAGGAAAATGGTCATAGGAGTGGTACCTTGCCTaacattctcacgcacattttcccttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16532269 637 - 220367699 -ccccttAACTCAGAATCAGCCACGCTGAACCGAGGTGAGGTTTTATGCATATCA------GATTGAGGACCTTCTCTGGGGGATGGTAGGCTGATGGCTTAGTCATCCTGTAAAGAGCCCAGCATGTGAC-GCACAGCTGGGTCTACCTACAGCACGGAGATGGCTATCTGGGAATAATGGGCACTAGAATTGGAGGATCCTGATGAACCACTTCGTGGCCCCTTGCTTGTACCACCTCCCTTCCCGCCAGCTAAATATTGCTGAGATACCCAGCTTCTGATTAAAGCCGCATGATGGAACTTGTCCTAAGGATGCAACTGATGGCCCGTGTCAGCTTGTTggagttaaaaaatatattttaatttgtttagctCTCTGGGGAAATTATCTGAGCCTGCATGTGATAATCAACTTTCACATGAGCTTTCAAGAAACCTGAAATgatttgagcaac-aaaatgagatttttaatctACATAAATATAGGAGTCGTTTGcctc-----------tctgtttgtgtgtg-------tgcgagAGGAGGGGAGATTAAAACAATTCTAACTCGTTCC-----TTCT-CCTCTAGGACACTCTCATTAGCAACGGTAGGAAAATGGTCATAGGAGTGGTACCTCGCCTAACATTCTCACGCACATTTTCCCTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82329708 637 + 85787240 -CCCCTTAACTCAGAATCAGCCACGCTGAACTGAGGTGAGGTTTTATGCATATCA------GATTGAGGACCTCCTCGGGGGGGTGGTAGGCTGATGGCTTAGTCATCCTGTAAAGAGCCCAGCGTGTGAC-GCACAGCTGGGTCTACCTACAGCATGGAGATGGCTATCTGGGAATCATGGGCACTAGAATTGGAGGATCCTGGTGAACCACTTCCTGGCCCCTTGCTTGTACCACCTCCCTTCCCGCCAGCTAAATATTGCTGAGATACCCAGCTTCTGATTAAAGCCACATGATGGAACTTGTCCTAAGGATGCAACTGATGGCCCGTGTCAGCTTGTTGGAGTTAAAAAATATATTTTAATTTGTTTAGCTCTCTGGGGAAATTATCTGAGCCTGCATGTGATAATCAACTTTCACATGAGCTTTCAAGAAACCTGAAATGATTTGAGCAAC-AAAATGAGATTTTTAATCTACATAAATACAGGGGTCGTTTGCCTC-----------TCTGTTTGTGTGTG-------TGCGAGAGGAGGGGAGATTAAAACAATTCTAACTCGTTCC-----TTCT-CCTCTAGGACACTCTCATTAGCAACGGTAGGAAAATGGTCATAGGAGTGGTACCTTGCCTaacattctcacgcacattttcccttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13992606 633 - 49578535 -GCCCTTAACTCAGAATCAGCCACACTGAATCGAGGCGAGGTTATATGCATATCA------GACGGAGGACGTCCTT--GGGGGTGGTAGGCTGATGGCTTCGTCATCCTGTAAAGAGTGCAGTGTTGGACTGCACAGCT-GGTCTCCCTACAGCATGGAGCTGGCCGTCTGGGAATGCTGAGCTCTAGAATTAGAGGGACCTGATGAACCACTTCCCGGCCCCTCACTGCTGCCA-CTCCCTTCCTGCCAGGTAAATATTGCTTCGACACTCAGCCCCTGATTAACGCTACATGATGGAGCCTGTACTGAGGCTGCAACCGATGGCCCGTGTCAGCTTGTTGGAGttaaaaaatatattttaatttGTTTAGCTCTCCGGGGAAATTATCTGAGCCTGCATGTGATAATCAACTTTCACACGAGCTTTCAAAAAACCCGAAATGATTTGAGCAGC-AAAATGAGATTTTTAATCTACATAAATACAGGAGTCCTTTGCCTC---------------TTTCTGTGTG-------TGTGAGAGGAGGGGAGATTAAGACAATTCTGATTCATCCCCTTTCTTCT-CCCCTAGGGCACTGTCATTCGCAGTGGT-GGAAAATGGCCATAGGAATGGTACCTCACCTAACATT-TCACACACGGTTTCCCttt i calJac3.chr19 C 0 I 563 s mm10.chr1 178635260 595 + 195471971 -CCC--TAACGCAGAATCAACCAAGCTGGATTGACATTGAGTTACAGATAGATTACATTTGGATTGAAAGTCTCCTAGGGAGG---------TTATAATTTGGTCCACCTCCATAGAGCCTAGTATCTGAT-GAATAGCA-GGCCGGCCTGAGGGCAGGACGGGGCTAT-GGGGAAGAGTAGGCGCTGGAACCTTAGAATCC-ATCCAACCACTCCCTGGGCTGTTGC--------------TTCCTGCCAGGTAAGTATTGCTTAGGTACCCAGTCTAGGATTAAAGCGACAAGACAGAACTCGTACCAAGGATGCAACTGATGGCCCATGTCAGCTGGTTGGAGttaaaaaatatattttaatttGCTTAGCTCTCTGGGGAAATTATCTGAACCTGCATGTGCTAATCAACTTTCACAGGCGCTTTCAAGGAACCCAAAACGAGTCAAGCAAC-AAAATGAGATTTTTAATCTACATAAATACAGAAATCTTTTGCCCC-----------CCCCCTTT-------------------AAGAAGGAGATTAAAAAAAATTCTAATTCATTCT-TCCCTCCTGTCTCCAGGACTCTGCCATTAGCAGCTATTGGAAAATGATCATAG-------------CTTTCAAATCTTTCACAGGTTCCCCCCTT i mm10.chr1 C 0 C 0 s canFam3.chr7 36206913 617 + 80974532 CCGTCTGAAATCAGAATCCGCCAAGCTGGGTTGGGGTGTGGCTGCAAGTTTATCA------GACTGCAGGCCCCCTGGCGTAGAGGGTGGGGAGACCACTTG-----------------TAGGTCTCAGAC----------------CCTGCAGCATGGAGTTGGCCGTGTGAGGATGATGGGCACTGAGATCAGAGGATCCTGATGAACTGCTTCCTGGCCTGTCACCC-TGCCACCTCCCTTCCCGCCAGGTGAATATTGCTTAGACATTCAGCTTCTGATTAAAGCTGCATGATGGAACTCGTACCAAGGATAGAGCTGATGGCCCGTGTCAGCTTATTGGAGttaaaaaatatattttaatttGTTTAGCTCTCTGGGGAAATTATCTGAGCCCGCATGTGATAATCAGCTTTCACA------------AAACCTGAAATTATTCGAGCCACAAAAATGAGATTTTTAATCTACATAAATAAAGAAGTCTTTTGCCCCACCCTCCCCAACCtttttttttttattattattttGAGAGTAGGGGAGATTGAGAAAATTCTAATTCATTCTGTCCCTTCT-CCCCCAGGACACTGTCATTAGCAGTTGTAAGAAAATGATtataccactagtaccatgtacaacattttcacagacattttctcttc i canFam3.chr7 I 2 C 0 a score=129440.000000 s hg38.chr1_KI270759v1_alt 6896 56 + 425601 ggactttaaacttcacatcaactcttaa-ggtgggggtgggcggtagcaagtgttgc s panTro4.chr1 224746843 57 + 228333871 ggactttaaacttcacatcaactcttaaaggtgggggtgggcggtagcaagtgttgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226110579 57 - 229942017 ggactttaaacttcacatcaactcttaaaggtgggggtgggcggtagcaagtgttgc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140000004 57 - 143122389 ggactttaaacttcacatcaacccttaaaggtcggggtgggcggtagcaagtgttgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16719265 47 - 229590362 ggacttgaaacttcacatcaactcttaagggcgggg----------gcaagtgctgc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223479310 56 - 227556264 ggacttgaaacttcacatcaactcttaagggcgggggcagg-ggtagcaagtgctgc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16532906 56 - 220367699 GGACTTGAAACTTCACATCAACTCTTAAGGACGGGGGCAGG-GGTAGCAAGTGCTGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82330345 56 + 85787240 ggacttgaaacttcacgtcaactcttaagggtgggggcagg-ggtagcaagtgctgc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178635855 47 + 195471971 -TTTGTGTAATTTTCTATCAG-----AAGGTCGGGGGC----TGTGGCAAATATcac i mm10.chr1 C 0 I 254 s canFam3.chr7 36207530 54 + 80974532 ttattttaaactttacaccaactcgtaagtttaggg---ggtggtggcaagtattga i canFam3.chr7 C 0 C 0 e calJac3.chr19 13993239 563 - 49578535 I a score=656092.000000 s hg38.chr1_KI270759v1_alt 6952 262 + 425601 ttcccctttttatggaaaaaagtaggtctcagagaggttacgtgacatgc----ccaagttcatgt-gctggtgggttgcagagtcagttctagagcccagttctttttggaaactggatcaatgctctttctacctcaccagctgtctcATATTAATACTAGAGATACTAATGCAAAAACACTACCATAATAGTA-----TCTGCAAGAGAACAAATTCAAGGG--AAGATGGATGGATACTggccgggcgccgtggctcaggactgtaatcc s panTro4.chr1 224746900 262 + 228333871 ttcccctttttatggaaaaaagtaggtctcagagaggttacgtgacatgc----ccaagttcatgt-gctggtgggttgcagagtcagttctagagcccagttctttttggaaactggatcaatgctctttctacctcaccagctgtctcATATTAATACTAGAGATACTAATGCAAAAACATTACCACAATAGTA-----TCTGCAAGAGAACAAATTCAAGGG--AAGATGGATGGATACTggccgggcgccgtggctcaggactgtaatcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226110636 266 - 229942017 ttcccctttttatggaaaaaagtaggtctccgagaggttacgtgacatgcccaaccaagctcatgt-ggtggtgggttgcagagtcagttctagagcccagttctttttggaaactggatcaatgctctttctacctcaccacctgtctcATATTACTACTAGAGATACTAATGCAAAAACATTACCATAATAGTA-----TCTGCAAGAGAACAAATTCAAGGG--AAGATGGATTGATATTggccgggcgccatggctcaggactgtaatcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140000061 262 - 143122389 ttcccctttttatggaaaaaagtgggtctcagagaggttatgtgacatgc----ccaagttcatgt-gctggtgggttgcagagtcagttctagagcccagttctttttggaaagtggatcaatgctctttctacttcactagctgtctcATATTAATAGTAGAGATACTAATGCAAAAACATTACCATAACAGTA-----TCTTCAAGAGAGCAAATTCAAGGG--AAGATGGATTGATACTggctgggggcggtggctcatgcctgtaatcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16719312 262 - 229590362 ttcctctttttatggaaaaaagtaggtctcagagaggttacatgacatcc----ccaagttcatgt-gctggtggattgtagagtcagttctagaggccagttctttttggaagctggctcaatgctctttctacctcaccggctgtctcATATGAATACTAGTGATACTAATGCAAAAACATTACCATAATAGTA-----TCTGCAAGAGAACAAATTCAAGGG--AAGACGGATTGATACTggccgggcgcagtggctcatacctgtaatcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223479366 262 - 227556264 ttcctctttttatggaaaaaagtaggtctcagagaggttacatgacatcc----ccaagttcatgt-gctggtggattgtagagtcagttctagaggccagttctttttggaagctggctcaatgctctttctacctcaccggctgtctcATATGAATACTAGTGATACTAATGCAAAAACATTACCATAATAGTA-----TCTGCAAGAGAACAAATTCAAGGG--AAGACGGATTGATACTggccgggcgcagtggctcatacctgtaatcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16532962 262 - 220367699 TTCctctttttatgaaaaaaagtagGTCTCAGAGAGGTTACATGACATCC----CCAAGTTCATGT-GCTGGTGGATTGTAGAGTCAGTTCTAGAGGCCAATTCTTTTTGGAAGCTGGCTCAATGCTCTTTCTACCTCACCGGCTGTCTCAAATGAATACTAGTGCTACTAATGCAAAAACATTACCATAATAGTA-----TCTGCAAGAGAACAAATTCAAGGG--AAGACGGATTGatactggccgggtgcagtggctcatacctgtaatcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82330401 262 + 85787240 ttcctctttttatggaaaaaagtagatctcagagaggttacgtgacatcc----ccaagttcacgt-gctggtggactgtagagtcagttctagaggccagttctttttggaagctggctcaatgctctttatacctcactggctgtctcATATGAATACTAGTGATACTAATGCAAAAACATTACCATAATAGTA-----TCTTCAAGAGAACAAATTCAAGGG--AAGATGGATTGATACTggccaggcacggtggcttacgcctgtaatcc i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36207584 214 + 80974532 --tccccttttatggaagaaagtgggtcactgagacatt--gagatttgc----ccaagttcacatggctgatgagttgtagagtcgggcctagaacccagttc-tttcggcaaccagctcaatgctcctccaacctaccaggctgccccAAAGTA----------------------------ACGATAATAGTAGAGGGTTTATAAGAGAATAGAGTTGAAGATTAAAGTGGAT-----------------------TTATGATTGTATTCC i canFam3.chr7 C 0 I 48 e mm10.chr1 178635902 254 + 195471971 I e calJac3.chr19 13993239 563 - 49578535 I a score=583706.000000 s hg38.chr1_KI270759v1_alt 7214 278 + 425601 cagcactttgggaggctgaggcgggcagatcacgaggtcaagagatcgagaccatcctggccaacctggtgagaccc-gtctctactaaaaatacaaaaattagccaggcgtggtggtgcgcacctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcatgacactgcacttcagcctcggcgacagagtgagactccatctcaaaaaacaaacaaacaaacaaacaaacaaa s panTro4.chr1 224747162 279 + 228333871 cagcactttgggaggctgaggcgggcagatcacgaggtcaagagatcgagaccatcctggccaaccaggtgagaccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgcgcacctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcatgacactgcacttcagcctcggtgacagagtgagactccatctcaaaaaacaaacaaacaaacgaacaaacaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226110902 277 - 229942017 cagcactttgggaggctgaggcgggcagatcacgaggtcaagagattaagaccatcctggccaacctggtgagaccccgtctctactaaaaatacaaaaattagcctggcgtggtggtgcgtgtctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacct-ggaggcagaggttgcaatgagccaagatcatgccactgcacttcagcctgggtgacagagtgagacttcatctc-aaaaacaaacaaacaaacaaacaaacaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140000323 270 - 143122389 cagcactttgggaggctgaggtgggcggatcacaaggtcaagagatcaagaccatcctggccaacctggtgagaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcacgtgcctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgagcctgggaggcagaggttgcagtgagccaagattgcgccactgcactccagcct-ggcaacagagtgagactccatctcaaaaaacaaaca--------aacaaacaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16719574 261 - 229590362 cagcactttggggggctgaggtgggcgaatcacgaggtcaagagatcgagaccatcctggccaacctggtgaaa-cccgtctctactaaaaatacaaaaatgagccaggcgtggtggc-ggcgcctgtactcccagctactcgggaggctgaggcaggagagtggtgtgaacccgggaggcggagcttgcagtgagccgagatcacgccactgtactccagcctgggagacacagcgagactccgtctcaaa----------------aaacaaaCAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223479628 266 - 227556264 cagcacttcgggaggctgaggtgggcgaatcacgaggtcaagagatcgagaccatcctggccaacctggtgaaa-cccgtctctactaaaaatacaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagagtggtgtgaacccgggaggcggagcttgcagtgagccgagatcacgccactgtactccagcctgggcgacagagcaagactccgtctcaaaaaac------------aaacaaaCAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16533224 263 - 220367699 cagcactttgggaggctgaggtgggcgaatcacgaggtcaagagatcgagaccatcctggccaacctggtgaaaccccatctctactaaaaatacaaaaattagccaggtgtggtggtgggtgcctgtggtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggtggagcttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactccgtctcaaa----------------aaacaaacaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82330663 267 + 85787240 cagcactttgggaggctgaggtgggcgaatcacgaggtcaagagatggagaccatcctggccaacctggtgaaaccccgtctctactaaaaatacaaaaattatccaggcatggtggcgggcgcctgtagtcccagctactcgggaggctaaggcaggagaatggtgtgaacccaggaggcggagcttgcagtgagccgagatcgcaccactgcactccagcctgggcggcagagcgagactccatctcaaaaaac------------aaacaaacaaa i chlSab2.chr25 C 0 C 0 e mm10.chr1 178635902 254 + 195471971 I e canFam3.chr7 36207798 48 + 80974532 I e calJac3.chr19 13993239 563 - 49578535 I a score=-770.000000 s hg38.chr1_KI270759v1_alt 7492 1 + 425601 A s panTro4.chr1 224747441 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226111179 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140000593 1 - 143122389 a i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16719835 1 - 229590362 C i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223479894 1 - 227556264 C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16533487 1 - 220367699 c i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82330930 1 + 85787240 C i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13993802 1 - 49578535 A i calJac3.chr19 I 563 C 0 e mm10.chr1 178635902 254 + 195471971 I e canFam3.chr7 36207798 48 + 80974532 I a score=148089.000000 s hg38.chr1_KI270759v1_alt 7493 43 + 425601 AGATGGATTGACACTGCACCTGCCTGCATCAGCCAGGCTAAGC s panTro4.chr1 224747442 43 + 228333871 AGATGGATTGACACTGCACCTGCCTGCATCAGCCAGGCTAAGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226111180 43 - 229942017 AGATGGATTGACATTGCACCTGCCTGCATCAGCCAGGCTAAGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140000594 43 - 143122389 aGATGGATTGACACTGCACCTGCCTGCATCAGCCAGGCTAAGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16719836 43 - 229590362 AGATGGATTGGCACTGCACCTGCCTGCGTCAGCCAGGCTAAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223479895 43 - 227556264 AGATGGATTGGCACTGCACCTGCCTGCGTCAGCCAGGCTAAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16533488 43 - 220367699 agatGGATTGACACTGCACCTGCCTGCATCAGCCAGGCTAAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82330931 43 + 85787240 AGATGGATTGACACTGCACCTGCCTGCATCAGCCAGGCTAAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13993803 43 - 49578535 AGATGGGTTGCTACTGCACCTGCCTGCGTCAGCCAGGTTAAGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178636156 43 + 195471971 AGATAGATTTTTGTTGCCACCTCTCCATTCAGCCAGGATAAGC i mm10.chr1 I 254 C 0 e canFam3.chr7 36207798 48 + 80974532 I a score=174828.000000 s hg38.chr1_KI270759v1_alt 7536 54 + 425601 TGGGTTAAGTTGTGGC--------TACACCAGATGTCTATGGCTTCACTGGTTTATGCAAAG s panTro4.chr1 224747485 54 + 228333871 TGGGTTAAGTTGTGGC--------TACACCAGATGTCTGTGGCTTCACTGGTTTATGCAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226111223 54 - 229942017 TGGGTTAAGTTGTGGC--------TACACCAGATGTCTATGGCTTCACTGGTTTATGCAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140000637 54 - 143122389 TGGGTTAAGCTGTGGC--------TACACCAGATGTCTGTGGCTTCACTGGTTTATGCAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16719879 54 - 229590362 TGGGTTAAGCTGTGGC--------TACACCAGATGTCTGTGGCTTCACCGGTTTATGCAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223479938 54 - 227556264 TGGGTTAAGCTGTGGC--------TACACCAGATGTCTGTGGCTTCACCGGTTTATGCAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16533531 54 - 220367699 TGGGTTAAGCTGTGGC--------TACACCAGATGTCTGTGGCTTCACCGGTTTATGCAAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82330974 54 + 85787240 TGGGTTAAGCTGTGGC--------TACACCAGATGTCTGTGGCTTCACTGGTTTATGCAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13993846 54 - 49578535 TGGGCTAAGTTCTGTT--------TACCCCGGCTGTCTGTGGCTTCACCTGTTTATGCAAAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178636199 60 + 195471971 CAGGTTCAATTATGGCAGGTCGTTTATGCCAG--GTCCGCAGGGGTCCCCGTGTATGCAAGG i mm10.chr1 C 0 I 1282 s canFam3.chr7 36207846 23 + 80974532 ---------------------------------------TGGTTTAACTTGTTTATGCAAAG i canFam3.chr7 I 48 C 0 a score=1654204.000000 s hg38.chr1_KI270759v1_alt 7590 574 + 425601 TCCCCTGTGGGGCCAGGTCACTCTCCAGGGA----------------------------AGATCTCATGAC-TTCC--ATGTCAGCAGGA---CTTAGGGTGCACTGAAG---AGGGAAAGCAGACTGAAGAGCTTTGTCGAAAGGGTGTTTAAGTTTGGCAGCCCAAAAATGACAGAG-AAGTTCATAGCCAGTCACAGCCTGTGGGCTGGCTCTAATTGTGCAGCCCTGCCCGA-T-GCACGGGCGGTTGTGAAACTGTGTCTTCCGAGTGTGTAAGAAGGGGAGAAGACCCGGAAATACTGGTGACCACTAGCCATGAGCACCACATGGTCTGCAGGTCTGAGCGGTCAAAA-GATCTGTTCTGTGGAGCAGGCTCCCCTTTAAC-CATGTCCCTGTCACAGATCCCGCGGCAAGCA-TTCACACCACCTGGAATTAATCGGGAAGAAAGTCGCAGTGTTTAGCAGA----TATTTCACAGATATAAACTGTGCGGTC-TTCCTAAGTCTCTGCACATGATCAGCTGAAGATTGGGCTTCTTGTGGTGCACATACCATTTTCGTCATTAAATCCCCAATGACTCACCTTGTCCTGAAACTGTTA--AAGCTCCTTAGCAAG s panTro4.chr1 224747539 574 + 228333871 TCCCCTGTGGGGCCAGGTCACTCTCCAGGGA----------------------------AGATCTCATGAC-TTCC--ATGTCAGCAGGA---CTTAGGGTGCACTGAAG---AGGGAAAGCAGACTGAAGAGCTTTGTCGAAAGGGCGTTTAAGTTTGGCAGTCCAAAAATGACAGAG-AAGTTCATAGCCAGTCACAGCCTGTGGGCTGGGTCTAATTGTGCAGCCCTGCCTGA-T-GCACGGGCGGTTGTGAAACTGTGTCTTCTGAGTGTGTAAGAAGGGGAGAAGACCCGGAAATACTGGTGACCACTAGCCATGAGCACCACATGGTCTGCAGGTCTGAGCGGTCAAAA-GATCTGTTCTGTGGAGCAGGCTCCCCTTTAAC-CATGTCCCTGTCACAGATCCCGCGGCAAGCA-TTCACACCACCTGGAATTCATCGGGAAGAAAGTCGCAGTGTTTAGCAGA----TATTTCACAGATATAAACTGCGCGGTC-TTCCTAAGTCTCTGCACATGATCAGCTGAAGATTGGGCTTCTTGTGGTGCACATACCATTTTTGTCATTAAATCCCCAGTGACTCACCTTGTCCTGAAACTGTTA--AAGCTCCTTAACAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226111277 575 - 229942017 TCCCCTGTGGGGCCAGGTCACTCTCCAGGGA----------------------------AGATCTCATGAC-TTCC--AAGTCAGCAGGA---CTTAGGGTGCACTGAAG---GGGGAAAGCAGACTGAAGAGCTTTGTCGAAAGGGCATTTAAGTTTGTCAGCCCAAAAATGACAGAG-AAGTTCATAGCCAGTCACAGCCTGTGGGCTGGGTCTAATCGTGCAGCCCTGCCCGA-T-GCACGGGCGGTTGTGAAACTGTGTCTTCCGAGTGTGTAAGAAGGGGAGAAGACCCGGAAATACTGGTGACCACTAGCCATGAGCACCACATGGTCTGCAGGTCTGAGCGGTCAAAAGGATCTGTTCCGTGGAGCAGGCTCCCCTTTAAC-CATGTCCCTGTCACAGATCCCGCGGCAAGCA-TTCACACCACCTGGAATTAATCGGGAAGAACGTCACAGTGTTTAGCAGA----TATTTCACAGATATAAACTGTGCGGTC-TTCCTAAGTCTCTGCACATGATCAGCTAAAGACTGGGCTTCCTGTGGTGCACATACCATTTTTGTCATTAAATCCCCAATGACTCACCTTGTCCTGAAACTGTTA--AAGCTCCTTAACAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140000691 577 - 143122389 TCCCCTGTGGGGCCAGGTCACTCTCCAGGGA----------------------------AGATCCCATGAC-TTTC--ATGTTAGCAGCA---CTTAGGGTGCACTGAAG---AGGGAAAGCGGACTGAAGAGCTTTGTCGAAAGGGCGTTTAAGTTTGTCAGCCCAAAAATGACAGAG-AAGTTCATAGCCAGTCACAGCCTGTGGGCCGGGTCTAATTGTGCAGCCCTGCCTGA-T-GCATGGGCGGTTGTGAAACGGTGTCTTCCGAGTGTGTAAGAAGGGGAGAAGACCCGGAAATACTGGTGACCACTAGCCATGAGCACCACACCGTCCGCAGGTCTGTGCGGCCAAAA-GATCTGTTCTGTGGAGCAGGCTCCCCTTTAAC-CACGTCCCCGTCACAGATCCCGCGGCAAG-A-TTCCCACCACCTGGAATTAATCGAGGAGAACATCTCAGCGTTTAACAGATGTTTATTTCACAGATATAAACGGTGCGGTC-TTCCTAAGTCTCTGCACGTGATCAGCTAAAGATTGGGGTTCCTGTGGTGCACATACCATTTTCGTCATTAAATCCCCAATGACTCACCTTGTCCTGACACTGTTA--AAGCTCCTTAACAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16719933 572 - 229590362 TCCCCTGTGGGGCCAGGTCACTCTCCAGGGA----------------------------AGGTCTCATGAC-TTCC--GTGTCCGCAGGA---CTTAGGTTGCACTGAAG---AGGG-AAGTGGACTGAAGAGCTTTGTCGAAAGGGCGTTTAAGTTTGTCAGCCCAAAAATGACAGAGAAAGTTCATCGCCAGTCACAGCCCGTGGGCCAGGTCTAATTGCGCAGCCCTGCCCGA-T-GCACGGGCGGTTGTGAAACTGTGTCTTCCAAGTGTGTACGAAGGGGAGAAGACCCAGAAATGCTGGTGATCACTAGCCATGAGCACCACA--GTCTGCGGGTCTGTGCGGCCAAAA-GATCCGTTCTGTGGAGCGGGTTCCCCTTTAAC-CATGTGCCTGTCACAGATCCCGCGGCAAGCA-TTCACACCACCTGGAATTACTTGGGAAGGGCATCGCAGTGTTTAACAGA----TATTTCACAGATATACACGGTGCGGCC-TTCCTAAGTCTCTGCACATGAGCAGCTCAAGACCGGGGTTCCTGTGATGCACATACCATTTTCGTCATTGAATCCCCAGTGACTCACCTTGTCCTGAAACTGTTA--AAGCTCCTTACCAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223479992 572 - 227556264 TCCCCTGTGGGGCCAGGTCACTCTCCAGGGA----------------------------AGAGCTCATGAC-TTCC--GTGTCCGCAGGA---CTTAGGTTGCACTGAAG---AGGG-AAGTGGACTGAAGAGCTTTGTCGAAAGGGCGTTTAAGTTTGTCAGCCCAAAAATGACAGAGAAAGTTCATCGCCAGTCACAGCCCGTGGGCCAGGTCTAATTGCGCAGCCCTGCCCGA-T-GCACGGGCGGTTGTGAAACTGTGTCTTCCAAGTGTGTACGAAGGGGAGAAGACCCAGAAATGCTGGTGATCACTAGCCATGAGCACCACA--GTCTGCAGGTCTGTGCGGCCAAAA-GATCCGTTCTGTGGAGCGGGTTCCCCTTTAAC-CATGTGCCTGTCACAGATCCCGCGGCAAGCA-TTCACACCACCTGGAATTACTTGGGAAGAGCATCGCAGTATTTAACAGA----TATTTCACAGATATACACGGTGCGGCC-TTCCTGAGTCTCTGCACATGAGCAGCTCAAGACCGGGGTTCCTGTGATGCACATACCATTTTCGTCATTGAATCCCCAGTGACTCACCTTGTCCTGAAACTGTTA--AAGCTCCTTAACAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16533585 574 - 220367699 TCCCCTGTGGGGCCAGGTCACTCTCCAGGGA----------------------------AGATCTCATGAC-TTCC--ATGTCAGCAGGA---CTTAGGCTGCACTGAAG---AGGGAAAGTGGGCTGAAGGGCTTTGTCGAAAGGGCGTTTAAGTTTGTCAGCCCAAAAATGACAGAG-AAGTTCATAGCCAGTCACAGCCTGTGGGCCAGGTCTAATTGCGCAGCCCTGCCCGA-T-GCACAGGCGGTTGTGAAACTGTGTCTTCCAAGTGTGTACGAAGGGGAGAAGACCCAGAAATTCTGGTGATCACTAGCCATGAGCACCACACTGTCTGCAGGTCTGTGCGGCCAAAA-GATCCGTTCTGTGGAGCGGGTTCCCCTTTAAC-CATGTGCCTGTCACACATCCCGCGGCAAGCA-TTCACACCGCCTGGAATTACTTGGGAAGAACATCGCAGTGTTTAACAGA----TATTTCACAGATATACACGGTGCGGCC-TTCCTAAGTCTCTGCACATGAGCCGCTCAAGACCGGGGTTCCTGTGGTGCACATACCATTTTTGTCATTAAATCCCCAGTGACTCACCTTGTCCTGAAACTGTTA--AAGCTCCTTAACAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82331028 574 + 85787240 TCCTCTGTGGGGCCAGGTCACTCTCCAGGGA----------------------------AGATCTCATGAC-TTCC--ATGTCAGCAGGA---CTTAGGCTGCACTGAAG---AGGGAAAGTGGACTGAAGAGCTTTGTCGAAAGGGCGTTTAAGTTTGTCAGCCCAAAAATGGCAGAG-AAGTTCATAGCCAGTCACAGCCTGTGGGCCAGGTCTAATTGCGCAGCCCTGCCCGA-T-GCACGGGCGGTTGTAAAACTGTGTCTTCCAAGTGTGTAAGAAGGGGAGAAGACCCAGAAATGCTGGTGACCACTAGCCATGAGCACCACACTGTCTGCAGGTCTGTGCGGCCAAAA-GATCTGTTCTGTGGAGCGGGTTCGCCTTTAAC-CATGTCCCCGTCACAGATCCCGCGGCAAACA-TTCACACCACCTGGAATTACTTGGGAAGAACATCGCAGTGTTTAACAGA----TATTTCACAGATACACACGGGGCGGCC-TTCCTAAGTCTCTGCACATGAGCAGCTCAAGACTGGGGTTCCTGTGGTGCACATACCATTTTCGTCATTAAATCCCCAGTGACTCACCTTGTCCTGAAACTGTTA--AAGCTCCTTAACAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13993900 516 - 49578535 TCCCCTGTGGGGCCAGGTCACTCTCCAGGGA----------------------------CGATGTCATGATGTCCC--GTGTCAGCAGGAA-CCTT---TCCCACTGAAG---AGGGAAAGCGGACTGAAGGGTCTTGTGGAAAGGGCTTGTAAGTGTGTCAGCCCAAAAATGATGACG-AAGTTCATAGCCAGTCACGGCCTGTGGGGCCCGTCTAATCGCACAGCCCTGTCCGA-TGGCACGGGCGG-TGTGAAACTGCGTCTTCTGTGTGTGTAAGGAGGG--GAAAACCCAGAAATCCTGGTGGCCACTGGCCAGGAGCACCACGCCGTCTGCAGGTCT-----------------------GTGGAGCAGGCTTCTCGTTAACAAACGTCCCCATCACAGATCCTGCGACAAGCA-TTGCTTACACCTGGAATGACTTGGGAAGAGAGTCACAGCGTTTAACAGA----TATTTCACAGATATAAACTCTGTGGTC-TTCCTTAGTCTCTGCACATG-----------------------------------CCATTTTCCTCATGAAGCCGCCCATGACTCGCCTTGTCTTGAAACTGCGA--AAGCTCCTTACTAAG i calJac3.chr19 C 0 I 315 s canFam3.chr7 36207869 568 + 80974532 TCCCCTGTGGGTCTGGGTGACCTTCCAGGGCTGTTGCTTTCCTTGTCTCCAAACTGCTTTGATCTCCTAAC-CCCCCTATGTCAGCATGAAGCTTCAGGGTGCAGTGAGGTAAGGGAAGGGGGGACTGAAGG--TTTG-CATGTTGGTTTTTAAATGCTTCAGCCTGGAACCGACA----CAGTTCTGTGCCAGGC------------------------GCGTGGCCCTGCCAGGCT-GCACCAGGGGCCAGGAAGCCTTGTCTTTAGCGTGTCCTGGAAGGGGAGGAAAACTAGGTATATTGGTGACCACTAGCAGTGACTGTCATGCTATCTGCAGA---------CCAGAA-GGTCAG-CCTGGGGAGCAGATCCCTTTGGACA-AACACCCATGTTGCAGATCCCAAGGAAAGCAGTTCCTACTACTAGAAGTAATTCTGGAGGCAGCTCTAAGTATCTGACAGA----AATTTACTGCATATAAATCATGTAACAGCTCCTAAATGTCT--ACATGACGGTTCAAGGTTTGTGATGCCTGTTTTATGGATACCATTTTCCTGATT-AATCTTCAACGATCCCCC----CTTGACCTTGCAAGCAAGCTCACTCTCTTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178636259 1282 + 195471971 I a score=607534.000000 s hg38.chr1_KI270759v1_alt 8164 227 + 425601 ------ACTGAGGCCCATCC----------------TGATTTGGGCCCCGACACCCTCCCCAGTCTCTTCTTTCA-TGGC--------ACCCCTC-C-TGTCATCTGGGTTTGTGAAGCT-CCTTTCAGTCCTCTCAAAAGAGCGTTTCTCTCTTCCCCCTCTCGCTCTCCGCACCT--GCTGTTCCCTCCGCTTTGAGGTATTTCCTCCTCACTCACGTCCCTCTTTGTCCAGGTCTCAGGAGGCCTGCTCTTGTATGTGAG s panTro4.chr1 224748113 227 + 228333871 ------ACTGAGGCCCATCC----------------TGATTTGGGCCCCGACACCCTCCCCAGTCTCTTCTTTCA-TGGC--------ACTCCTC-C-TGTCATCTGGGTTTGTGAAGCT-CCTTTCAGTTCTCTCAAAGGAGCGTTTCTCTCTTCCCCCTCTCGCTCTCCGCACCT--GCTGTTCCCTCCGCTTTCAGGTATTTCCTCCTCACTCACGTCCCTCTTTGTCCAGGTCTCAGGAGGCCTGCTCTTGTATGTGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226111852 227 - 229942017 ------ACTGAGGCCCATCC----------------TGATTTGGGCCCGGACACCCTCCCCAGTCTCTTCTTTCA-TAGC--------ACTCCTC-C-TGTCATCTGGGTTTGTGAAGCT-CCTTTCAGTTCTCTCAAAGGAGCATTTCTCTCTTCCCCCTCTCGCTCTCCGTACCT--GCTGTTCCCTCTGCTTTGAGGTATTTCCTCCTCACTCACGTCCCTCTTTGTCCAGGTCTCAGGAGGCCTACTCTTTTATGTGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140001268 227 - 143122389 ------ACTGACTCCCATCC----------------TGATTTGGGCCCGGACACCCTCCCCAGTCTCTTCTTTCA-CGGC--------ACTCCTC-C-TGCCATCTGGGTTTGTGAAGCT-CCTTCCAGTTCTTTCAAAGGAGCGTTTCTCTCTTCCCCCTCTCGCTCTCCGCACCT--GCCGTTCCCTCCGCTTTGAGGTATTTCCTCCTCACTCACGTCCCTCTTTGTCCAGGTCTCAGGAGGCCTGCTCTTGTGTGTGAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16720505 227 - 229590362 ------ACTCAGGCGCATCC----------------TGATTCGGGCCTGGATACCCTCCCCA-CCTCTTCTTTCACCAGC--------ACTCCTC-C-TGGCATCTGGGTTTGGGAAGCT-CCTTCCAGCTCTCTCAAAGGAGCATTTCTCTCTTCCCCCTCTCGCTGTCCCCACCT--GCTGTTCCCTCTGCTTTGAGATATTTCCTCCTCACTCATGTCCCTCTCTGTCCAGGTCTCAGGAGGCCTGCTCTTGTATGTGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223480564 227 - 227556264 ------ACTGAGGCGCATCC----------------TGATTCGGGCCTGGATACCCTCCCCA-CCTCTTCTTTCACCAGC--------ACTCCTC-C-TGGCATCTGGGTTTGGGAAGCT-CCTTCCAGTTCTCTCAAAGGAGCATTTCTCTCTTCCCCCTCTCGCTGTCCCCACCT--GCTGTTCCCTCTGCTTTGAGATATTTCCTCCTCACTCATGTCCCTCTCTGTCCAGGTCTCAGGAGGCCTGCTCTTGTATCTGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16534159 227 - 220367699 ------ACTGAGGCGCATCC----------------TGATTTGGGCCTGGACACCCTCCCCA-TCTCTTCTTTCACCAGC--------ACTCCTC-C-TGTCATCTGGGTTTGGGAAGCT-CCTTTCAGTTCTCTCAAAGGAGCATTTCTCTCTGCCCCCTCTCGCTCTCCccacct--gctgttccctctgctttgAGGTATTTCCTCTTCACTCATGTCCCTCTTTGTCCAGGTCTCAGGAGGCCTGCTCTTGTATCTGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82331602 227 + 85787240 ------ACGGAGGCGCATCC----------------TGATTTGGGCCTGGACACCCTCCCCA-TCTCTTCTTTCACCAGC--------ACTCCTC-C-TGTCATCTGGGTTTGGGAAGCT-CCTTTCAGTTCTCTCAAAGGAGCATTTCTTTCTTCCCCCTCTCACTCTCCCCACCT--GCTGTTCCCTCTGCTTTGAGGTATTTCCTCCTCACTCATGTCCCTCTTTGTCCAGGTCTCAGGAGGCCTGCTCTTGTATCTGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13994731 230 - 49578535 ------aCTGAGGCCCATCCTGATATCCTGATTTTGTGATTTGGGCCCGGACAGCTTCCCCAGGCTCTTCCTTCACCACC--------ACTCCCCAC-GGTCATCTGGGTTTGTGAAGCCGCTTTTTGGTTCTCTCAGGGGAGCGTTTCTCTCT---CACTTTCTCTCTC---------------CCCTCGGCTGTGAGGTATTTCCTCCTCCCTCACTTCCCTCTGTGTCCAGGTCTCAGGAGCCctgctcttgtatctgag i calJac3.chr19 I 315 C 0 s canFam3.chr7 36208437 194 + 80974532 CCCTTGGCCTTGACACATGG----------------TGGCCTGCACCCTGCCATACTTCCC-----CCTTCCTCACTGGCTCCTGGCTTCTCCTC-CTTGTCACTTGGGTCT---CAGCT-C---------------AAATACCATTTC-------------------TCAGCACCTGGGTGAGACCCCTTCCTTTGTGTTCTGTCAAC----CCCAAGTGGATCTTTG--CAG---TGTAGTATCCTGTTCATATACATGAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178636259 1282 + 195471971 I a score=213071.000000 s hg38.chr1_KI270759v1_alt 8391 61 + 425601 TCCCTAGCTAGATGGCAAACCCCTTGGGGTCAGA--GACAGGGACTCCTGGCAGCACTTGCCC s panTro4.chr1 224748340 61 + 228333871 TCCCTAGCTAGATGACAAACCCCTTGGGGTCAGA--GACAGGGACTCTTGGCAGCACTTGCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112079 61 - 229942017 TCCCTAGCTAGATGGCAAACCCCTTGGGGTCAGA--GACAGGGACTCCTGGCAGCACTTGCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140001495 61 - 143122389 TCCCTAGCTGGATGGCAAACCCCTTGGGGTCAGA--GACAGGGACCCCTGGCAGCACTTGCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16720732 61 - 229590362 TCCCTAGGTAGATGGCAAACTCTCTGGGGTCAGG--GACAGGGACTCCTGGAAGCACTTGCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223480791 61 - 227556264 TCCCTAGGTAGATGGCAAACTCTTTGGGGTCAGG--GACAGGGACTCCTGGAAGCACTTGCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16534386 61 - 220367699 TCCCTAGGTAGATGGCAAACTCCTTAGGGTCAGG--GACAGGGACTCCTGGCAGCACTTGCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82331829 60 + 85787240 TCCCTAGGTAGATGGCAAACTCCTTGGGGTCAGG--GACAGGGACTCTTGGCAGCACTTGCC- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13994961 61 - 49578535 tccccagctagatggcaaaccccttggggtcagg--gacagggcctgACGGCAGCACTTCCCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178637541 61 + 195471971 TCCCTCGCTATCTGCCTTACTCTTTGGGGTAAGG--AAGATGAACCAGTGGAAGCTCTTACCT i mm10.chr1 I 1282 C 0 s canFam3.chr7 36208631 63 + 80974532 CTCCCAACTAGGTGGCAAATGGGTCAGGGAGAGGCAGAGAGGTACTCACAGCAGCACTGGCCC i canFam3.chr7 C 0 I 7 a score=41024.000000 s hg38.chr1_KI270759v1_alt 8452 16 + 425601 TTAAAA-ACTTATATTC s panTro4.chr1 224748401 16 + 228333871 TTAAAA-ACTTATATTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112140 16 - 229942017 TTAAAA-ACTTACATTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140001556 16 - 143122389 TTAAAA-ACTTACATTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16720793 16 - 229590362 TTAAAA-ACTTACATTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223480852 16 - 227556264 TTAAAA-ACTTACATTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16534447 16 - 220367699 TTAAAA-ACTTACATTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82331889 9 + 85787240 --------CTTACATTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13995022 16 - 49578535 TTAAAA-ACTTACGTTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178637602 17 + 195471971 GTAAGGTGTTTATTTTC i mm10.chr1 C 0 I 183 e canFam3.chr7 36208694 7 + 80974532 I a score=384916.000000 s hg38.chr1_KI270759v1_alt 8468 131 + 425601 Aggcggggggcggtgactcacacttgtaatcccagcactttgggaggcctaggcaggtggatcgcctgaggtcaggagcttgagaccagcc-tggccaacatggtgaaaccccatctctactaaaaatacaa s panTro4.chr1 224748417 131 + 228333871 Aggcggggggcggtgactcacacttgtaatcccagcactttgggaggcctaggcaggtggatcgcctgaggtcaggagcttgagaccagcc-tggccaacatggtgaaaccccatctctactaaaaatacaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112156 130 - 229942017 AGGc-gggggcggtgactcacacctgtaatcccagcactttgggaggcctaggcaggtggatcgcctgaggtcaggagcttgagaccagcc-tggccaacatggtgaaaccccatctctactaaaaatacaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140001572 131 - 143122389 Aggcggggggcggtgactcacacctgtaatcccagcactttgggaggcctaggcaggtggatcacctgaggtcaggagcttgagaccagcc-tggccaacatggtgaaaccccatctctactaaaaatacag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16720809 131 - 229590362 Aggtcgggggcggcggctcacgcctgtaatcccagcactctgggaggccgaggcgggtggatcactggaggtcaggagctcgacaccagcc-tggccaacatggtgaaaccccgtctctactaaaaatgcaa i rheMac3.chr1 C 0 M 155 s macFas5.chr1 223480868 129 - 227556264 AGGTGgggggcggcggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcac--gaggtcaggagcttgagaccagcc-tggccaacatggtgaaaccccgtctctactaaaaatgcaa i macFas5.chr1 C 0 I 9 s papAnu2.chr1 16534463 131 - 220367699 AGGCgcggggcggtggctcacacctgtaatcccagcattttgggaggcctaggcaggtggatcacctgaggtcaggagcttgagaccagcc-tggccaacatggcgaaaccccatatctactaaaaatgcaa i papAnu2.chr1 C 0 I 11 s chlSab2.chr25 82331898 131 + 85787240 AGGTGgggggcggtggctcacacctataatcccagcactttgggaggcctaggcaggtggatcacctgaggtcaggagcttgagaccagcc-tggccaacatggcgaaaccctgtatctactaaaaatgcaa i chlSab2.chr25 C 0 I 14 s calJac3.chr19 13995038 132 - 49578535 Aggccgggcacagtggctcacgcctataatcccagcactttggaaggccgaggcaggtggatcacctgaggtcatgagctcgagaccagccttggctaacatggtgaaatcccgtctctactaaagatacat i calJac3.chr19 C 0 C 0 e mm10.chr1 178637619 183 + 195471971 I e canFam3.chr7 36208694 7 + 80974532 I a score=167566.000000 s hg38.chr1_KI270759v1_alt 8599 83 + 425601 aaaaaaattagccaggcgtggtggtgggcgcctggaatcccagctactcgggaggccgaggcaggagaatcgcttgaacccca s panTro4.chr1 224748548 83 + 228333871 aaaaaaattagccaggcgtggtggtgggcgcctggaatcccagctactcgggaggccgaggcaggagaatcgcttgaacccca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112286 83 - 229942017 aaaaaaattagccaggcatgttggtgggcacctggaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140001703 83 - 143122389 aaaaaaatcagccaggggtggtggtgggtgcctggaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223481006 79 - 227556264 aaaaaaattagccagat---gtggt-ggcacctggaatcccagctaatcgggaggcagaggcaggaaaatcacctgaacccca i macFas5.chr1 I 9 C 0 s papAnu2.chr1 16534605 82 - 220367699 aaaaaaaaaagccaggtgtggtggt-ggcatctggaatcccagctactcgggaggcagagacaggagaatcgcttgaacccta i papAnu2.chr1 I 11 C 0 s chlSab2.chr25 82332043 82 + 85787240 aaaaaaattaggcaggtgtggtagt-ggcacctggaatcccagctacttggaaggcagaggcaggagaatcgcttgcacccca i chlSab2.chr25 I 14 C 0 s calJac3.chr19 13995170 83 - 49578535 aaaaaaattagtcaggcgtgatggccggtgccagtaatcccagctactcagaaggctgaggcaggagaatcacttttacccca i calJac3.chr19 C 0 C 0 e mm10.chr1 178637619 183 + 195471971 I e canFam3.chr7 36208694 7 + 80974532 I e rheMac3.chr1 16720940 155 - 229590362 M a score=120668.000000 s hg38.chr1_KI270759v1_alt 8682 74 + 425601 gagggagaggttgcagtgagtcgagatcgtgccactgcactccagcctgggcgacagagcgagactctgtctcg s panTro4.chr1 224748631 72 + 228333871 gagggagaggttgcagtgagtcgagatcgcgccactgcactccagcctgggcgacagagcgagact--gtctcg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112369 74 - 229942017 gaggcagaggctgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagcaagactctgcctca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140001786 74 - 143122389 gaggcagaggttgcagtgagccgagatcgctccactgcactccagcctgggcaacagagagagactctgtctca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223481085 73 - 227556264 gaggcagagcttgcagtgagccgagattgcaccactgcactccagcctgggcaacagagcgagactctgtctc- i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82332125 74 + 85787240 gaggcagaggttgcagtgagccaagattgcaccactgcactccagcctgggcaacagagtgagactctgtctca i chlSab2.chr25 C 0 I 7 s calJac3.chr19 13995253 74 - 49578535 gaggcagaggttgcagtgagccgagatcacgccactgcactgtagcctgggcgacagaacgagactccatctca i calJac3.chr19 C 0 C 0 e mm10.chr1 178637619 183 + 195471971 I e canFam3.chr7 36208694 7 + 80974532 I e rheMac3.chr1 16720940 155 - 229590362 M e papAnu2.chr1 16534687 0 - 220367699 C a score=50240.000000 s hg38.chr1_KI270759v1_alt 8756 32 + 425601 aaaaaaagaaa------aagcaaacaaacaaaCAGCCC s panTro4.chr1 224748703 32 + 228333871 aaaaaaagaaa------aagcaaacaaacaaaCAGCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112443 32 - 229942017 aaaaaaagaaa------aaacaaacaaacaaaaaaCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140001860 38 - 143122389 aaaaaaaaagaaaaaacaaacaaacaaaCAAAAAACCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16721098 32 - 229590362 aaaaaaaaaaa------aaagaaGCAAACAAAAAACCC i rheMac3.chr1 M 155 C 0 s macFas5.chr1 223481158 27 - 227556264 -----aaaaaa------aaaaaagcaaacaaaaaaCCC i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82332206 32 + 85787240 aaaaaaaaaaa------aaagaaGCAAACAAAAAACCC i chlSab2.chr25 I 7 C 0 s calJac3.chr19 13995327 26 - 49578535 aaaaaaggaaa------aaaccaaaaaaC------CCC i calJac3.chr19 C 0 C 0 e mm10.chr1 178637619 183 + 195471971 I e canFam3.chr7 36208694 7 + 80974532 I e papAnu2.chr1 16534687 0 - 220367699 C a score=64546.000000 s hg38.chr1_KI270759v1_alt 8788 22 + 425601 TTACATTCAGCATAGGGCTTAG s panTro4.chr1 224748735 22 + 228333871 TTACATTCAGCATAGGGCTTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112475 22 - 229942017 TTACATTCAGCATAGGGCTTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140001898 22 - 143122389 TTGCGTTCAGCATAGGGCTTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16721130 22 - 229590362 TTACATTCAGCATAGGGCTTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223481185 22 - 227556264 TTACATTCAGCATAGGGCTTAG i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82332238 22 + 85787240 TTACATTCAGCATAGGGCTTAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13995353 22 - 49578535 TTACATTCAGCACAGGCCTTAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36208701 21 + 80974532 TTACACTCAGCACAGG-CTTAG i canFam3.chr7 I 7 C 0 e mm10.chr1 178637619 183 + 195471971 I e papAnu2.chr1 16534687 0 - 220367699 C a score=366043.000000 s hg38.chr1_KI270759v1_alt 8810 168 + 425601 CTAATACATGGAAGCAACTGACTACTATGT-----GTTCAATAAGCAAATGAATGGTCGTGTGAATGGATAAATGAGGTCTGTGAAGTTGAATGCT-TGTCTGGGTGAGGGGAC--GTCTCCTGG-CTCACCCTCACCTCTGTTGGCTGTGCTGCAAGCTGTAGTCAGGATGGTCAT s panTro4.chr1 224748757 168 + 228333871 CTAATACATGGAAGCAACTGACTACTGTGT-----GTTCAATAAGCAAATGAATGGTCGTGTGAATGGATAAATGAGGTCTGTGAAGTTGAATGCT-TGTCTGGGTGAGGGGAC--GTCTCCTGG-CTCACCCTCACCTCTGTTGGCTGTGCTGCAAGCTGTAGTCAGGATGGTCAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112497 132 - 229942017 CTAATACATGGAAGCAACTGACT-----------------------------------------ATGAGTAAATGAGGTCTGTGAAGTTGAATGCT-TGTCTGGGTGAGGGGAC--GTCTCCTGG-CTCACCCTCACCTCTGTTGGCTGTGCTGCGAGCTGTAGTCAGGATGGTCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140001920 167 - 143122389 CTAATACATGGAAGCAACTGACTACTATTT-----GTTAAATAAGCAAATGAATGGTTGTGTGAA-GGGTAAATGAGGTCTGTGAAGTTGAATGCT-TGTCTGGGTGAGGGGAT--GTCTCCTGG-CTCACCCTCACCTCTCTTGGCTGTGCTGCAAGCTGTAGTCAGGATGGTCAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16721152 170 - 229590362 CTAATACATGGAAGCAACTGACTACGATGT-----GTTAAATAAGCAAATGAATGGTCGTGTGAATGGATAAATGAGGTCTGTGAAGTCGAATGCT-TGTCTGGGTGAGGGGACGAGTCTCCCGG-CTCACCCTCACCTCTGTTGGCTGTGCTGCAAGCTGTAGTCAGGATGGTCAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223481207 170 - 227556264 CTAATACATGGAAGCAACTGACTACGATGT-----GTTAAATAAGCAAATGAATGGTCGTGTGAATGGATAAATGAGGTCTGTGAAGTCGAATGCT-TGTCTGGGTGAGGGGACGAGTCTCCCGG-CTCACCCTCACCTCTGTTGGCTGTGCTGCAAGCTGTAGTCAGGATGGTCAT i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82332260 170 + 85787240 CTAATACATGGAAGCAACTGACTACGATTT-----GTTAAATAAGCAAATGAATGGTTGTGTGAATGGATAAATGAAGTCTGTGAAGTCCAAGGCT-TGTCTGGGTGAGGGGACAAGTCTCCCGG-CTCACCCTCACCTCTGTTGGCTGTGCTGCAAGCTGTAGTCAGGATAGTCAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13995375 175 - 49578535 CTAATCCATGGAAGCCGTTGACTACAGTTTTGTTCACTAAATAAGCAAATGAGTGGTTGTGTCAATGGACAAATGAGCCTCGTGAAGCTGAACGCT-TGCCTGGGTGAGGTGACAAGTCTCCTGA-CTTCCCCTCACCTCCACTGGCTGTGCTGCAGGCTGTGGTTGAGATGGTTAT i calJac3.chr19 C 0 I 439 s mm10.chr1 178637802 156 + 195471971 CTATTGCCTGGGAACACCTGGCTAAGGTTT-----GTTT----AGTTGATGACTGTTGGGACAAATGGACCAGTGGGGCTGAGAAAACTTCGTGCTGGGCCAGAGTGAGATGACAAGTCT------------CTCTTCTGTCCTGGCTGAGCTGTACACTTTGAATAAAATTCTTAT i mm10.chr1 I 183 C 0 s canFam3.chr7 36208722 149 + 80974532 ------CAGGAAATGACCTTAACAC-ATTT-----GTCAAAGGAACACATGGATGA-CATATGATTGGGGGAAGAAGCCTGACGAAG-------------CAGAGTGAGGTGAT--GCCCTGGGGTCCCACACTTCTCTCCATTGGCTGTGCTCTAAGTCATCATCAAGGTGGTTCC i canFam3.chr7 C 0 C 0 e papAnu2.chr1 16534687 0 - 220367699 C a score=9342.000000 s hg38.chr1_KI270759v1_alt 8978 3 + 425601 TTT s panTro4.chr1 224748925 3 + 228333871 TTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112629 3 - 229942017 TTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140002087 3 - 143122389 TTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16721322 3 - 229590362 TTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223481377 3 - 227556264 TTT i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82332430 3 + 85787240 TTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13995989 3 - 49578535 TGT i calJac3.chr19 I 439 C 0 s mm10.chr1 178637958 3 + 195471971 TTC i mm10.chr1 C 0 C 0 s canFam3.chr7 36208871 3 + 80974532 TTT i canFam3.chr7 C 0 I 548 e papAnu2.chr1 16534687 0 - 220367699 C a score=431704.000000 s hg38.chr1_KI270759v1_alt 8981 188 + 425601 CCAGCTTTGACCATGATTGCTCTTGCTTTTGGTGTCAGCGCCTACCTGTATGGTGCCCTCCATTCGTCAGTTGCCTTATATCCCAGCACGCTTCCTCAAGAGCTGAAGAAACGTCTTACATTTTCATATGAAATCATTT--------TCAAG-CAAGGTATAGATTCAC---ATAATACATAATTAATGGTAAAATGCTA s panTro4.chr1 224748928 188 + 228333871 CCAGCTTTGACCATGATTGCTCTTGCTTTTGGTGTCAGCGCCTACCTGTATGGTGCCCTCCATTCGTCAGTTGCCTTATATCCCAGCACGCTTCCTCAAGAGCTGAAGAAACGTCTTACGTTTTCATATGAAATCATTT--------TCAAG-CAACGTATAGATTCAC---ATAATACATAATTAATGGTAAAATGCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112632 188 - 229942017 CCAGCTTTGACCGTTATTGCTCTTGCTTTTGGTGTCAGCGCCTACCTGTATGGTGCCCTCCATTCGTCAGTTGCCTTATATCCCAGCACAGTTCCTTAAGAGCTGAAGAAACGTCTTACATTTTAATATGAAATCATTT--------TCTAG-CAAGGTACAGATTCAC---ATAATACATAATTAATGGTAAAATGCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140002090 188 - 143122389 CCAGCTTTGACCATGCTTGCTCTTGCTTTTGGTGTCAGCACCTACCTGTATGGTGCCCTCCGTTCATCAGTTGCCTTATATCCCAGCACGCTTCCTTAAGAGCTGAAGAAGCATCTTACATTTTAACGTGAAATCATTT--------TCTAG-CAAGCTATAGATTCAC---ATAATACATAATTAATGGTAAAATGCTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16721325 196 - 229590362 CCAGCTTTGACCATGATTGCTCTCGCTTTTGGTGTCAGCGCCTACCTGTATAGTGCCTTCCATTCGTCAGTTGCCTTATATCCCAGCACTCTTCCTTAAAAGCTGAAGAAACGGCTTACATTTTAATATGAAATCATTTTCTATTTATCTAG-CAAGATATAGATTCAC---ATAATACATAATGAATGGTAAAATGCTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223481380 196 - 227556264 CCAGCTTTGACCATGATTGCTCTCGCTTTTGGTGTCAGCGCCTACCTGTATAGTGCCTTCCATTCGTCAGTTGCCTTATATCCCAGCACTCTTCCTTAAAAGCTGAAGAAACGGCTTACATTTTAATATGAAATCATTTTCTATTTATCTAG-CAAGGTATAGATTCAC---ATAATACATAATGAATGGTAAAATGCTA i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82332433 197 + 85787240 CCAGCTTTGATCATGATTGCTCTCGCTTTTGGTGTCAGCGCCTACCTGTATGGTGCCCTCCATTCGTCAGTTGCCTTATATCCCAGCACTCTTCCTTAAGAGCCGAAGAAATGGCTTACATTTTAATATGAAATCATTTTCTGTTTATCTAGCCAAGGTATAGATTCAC---ATAATACGTAATGAACGGTAAAATGCTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13995992 183 - 49578535 CCAGCCTTGAGCGCGATTGCTCTTGCTTTTGCTGTCAG-------------GGTG---TCCGTCTGTCAGTTGCCTTACATCCCACCACGCTTCCCTAAGAGTTGACGAAATGTCTTACATTTTAATATTAAATCACGTTCTATTTCTCTAG-CAAGATATAAATTCACTTGATAATACGTAAGTAATGGCAGAACGCTA i calJac3.chr19 C 0 C 0 s mm10.chr1 178637961 188 + 195471971 TGAGCTTGGTTCACAGGT----CTGCTCTCAGTATCAGTGCTGACCTGGGCAGTGCCCT-----GGTCAACTGTCTTATGTCCCGATAGCCTTCC--AGAAGTGGGAGAAATATCTTCTATTTTAGCATTGAGTAGTTTTCCATCTCTCTCT-CAAGGTTTGAACTTATTTTCCAGTACATAGTGAATGATGAAATGCCA i mm10.chr1 C 0 I 344 e canFam3.chr7 36208874 548 + 80974532 I e papAnu2.chr1 16534687 0 - 220367699 C a score=73857.000000 s hg38.chr1_KI270759v1_alt 9169 33 + 425601 TTAGCATTATGTACTTAAATTATTTGGCTTTAA s panTro4.chr1 224749116 33 + 228333871 TTAGCATTATGTACTTAAATTATTTGGCTTTAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112820 33 - 229942017 TTAGCATTATGTACTTAAATTATTTGGCTTTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140002278 32 - 143122389 TTAGCATTATGTTCTTAAATTATTTGGC-TTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16721521 33 - 229590362 TTAGCATTATGTACTTAAATTATTTGGCTTTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223481576 33 - 227556264 TTAGCATTATGTACTTAAATTATTTGGCTTTAA i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82332630 33 + 85787240 TAAGCATTATGTACTTAAATTATTTGGCTTTAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13996175 33 - 49578535 TTAGTATTATGAACTTCAATTATTTGGCTATAA i calJac3.chr19 C 0 I 156 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36208874 548 + 80974532 I e papAnu2.chr1 16534687 0 - 220367699 C a score=134987.000000 s hg38.chr1_KI270759v1_alt 9202 71 + 425601 ggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggt s panTro4.chr1 224749149 71 + 228333871 ggccaggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112853 71 - 229942017 ggccaggcacggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140002310 71 - 143122389 ggccaggtgcagtgactcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16721554 71 - 229590362 ggccaggcgcggtggctcacgcctgtaattccagcactttgggaggtcgaggcgggtggatcacctgaggt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223481609 71 - 227556264 ggccaggcgcggtggctcacgcctgtaattccagcactttgggaggtcgaggcgggtggatcacctgaggt i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82332663 71 + 85787240 ggccaggcgcggtggctcacgcctgtaattccagcactttgggaggctgaggcgggtggatcacctgagat i chlSab2.chr25 C 0 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36208874 548 + 80974532 I e calJac3.chr19 13996208 156 - 49578535 I e papAnu2.chr1 16534687 0 - 220367699 C a score=146645.000000 s hg38.chr1_KI270759v1_alt 9273 70 + 425601 cgggagttggagaccggcctgaccaacatggagaaaccccgtctctactaaaaatac--aaaattagctggg s panTro4.chr1 224749220 70 + 228333871 cgggagttggagaccggcctgaccaacatggagaaaccctgtctctactaaaaatac--aaaattagctggg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112924 70 - 229942017 tgggagttggagactggcctgaccaacatggagaaaccccatctctactaaaaatac--aaaattagctggg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140002381 70 - 143122389 cgggagttggagactggcctgaccaacatggagaaaccccatctctactaaaaatac--aaaattagctggg i nomLeu3.chr5 C 0 M 2749 s rheMac3.chr1 16721625 70 - 229590362 tgggagtttgagaccagcctgaccaacatggagaaaccccatctctactaaaaatac--aaaattagctggg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223481680 70 - 227556264 tgggagtttgagaccggcctgaccaacatggagaaaccccatctctactaaaaatac--aaaattagctggg i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82332734 70 + 85787240 cgggagtttgagaccggcctgaccaacatggagaaaccccatctctactaaaaatac--aaaattagcggga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13996364 72 - 49578535 caggagtttgagaccaggctgggtgacatcgtgggacctcgtctctttaaagaaaacagagaaaaggctggg i calJac3.chr19 I 156 I 1 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36208874 548 + 80974532 I e papAnu2.chr1 16534687 0 - 220367699 C a score=395838.000000 s hg38.chr1_KI270759v1_alt 9343 320 + 425601 tgtggtggcgggcgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcggtgagccgagattgtgccactgcactccagcctgggcaacgagagcaaaactccatctca-----------------aaaaaataataaaaataaaaataaaTTATTTGG----------------CTATAATCCCCATTggagttactgtttaatgggtagagagtttcagtctgagttgatgaaaacgctctggagatggatggtggcaacagttgcacaaaaatgtgaatgtacctaatgccactgagacccacacttcaaaatggtt s panTro4.chr1 224749290 320 + 228333871 tgtggtggcgggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcggtgagccgagattgtgccactgcactccagcctgggcaacgagagcaaaactccatctca-----------------aaaacacaataaaaataaaaataaaTTATTTGG----------------CTGTAATCCCCATTggagttactgtttaatgggtagagagtttcagtctgagttgatgaaaacgctctggagatggatggtggcaacagttgcacaaaaatgtgaatgtacctaatgccactgagacccacacttcaaaatggtt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226112994 320 - 229942017 tgtggtggcgggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagccgagattgtgccactgcactccagcctgggcaacaagagcaaaactccgtctca-----------------aaaaaataataataataaaaataaaTTATTTGG----------------CTATAATCCCCATTAgagttactatttaatggatagagagtttcagtttgagttgatgaaaacgttctggagatggatggtggcaacagttgcacaacgatgtgaatgtacctaatgccactgagacctacacttcaaaatggtt i ponAbe2.chr1 C 0 M 412 s rheMac3.chr1 16721695 325 - 229590362 tgtggtggcatatgcctgtaatcccagcgacccaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagattgtgccattgcactccagcctgggcaacaagagcaaaactccatctca------------aataataataataataataataataataaATTATTTGG----------------CTATAATCCCCATTAgagttactatttaatgggtagagagtttcagtttgagctgatgaaacagttctggagatggatgatggcaacagttgtacaactatgggaatgtacctaatgacactgaaacctacacttcaaaatggtt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223481750 337 - 227556264 tgtggtggcatatgcctgtaatcccagcgacccaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagattgtgccattgcactccagcctgggcaacaagagcaaaactccatctcaaataataataataataataataataataataataataataaATTATTTGG----------------CTATAATCCCCATTAgagttactatttaatgggtagagagtttcagtttgagctgatgaaacagttctggagatggatgatggcaacagttgtacaactatgggaatgtacctaatgacactgaaacctacacttcaaaatggtt i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82332804 322 + 85787240 tgtggtggtgcacgcctataatcccagcggctcaggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcggtgagccgagattgtgccattgcactccagcctgggcaacaagagtgaaactccatctca---------------aataatagtaataataataataataaATTATATGG----------------CTACAATCCCCATTAgagttactgtttaatgggtggagagtgtcagtttgagctgatggaacagttctggagatggatgatgacaacagctgcacaacaatgggaatgtacctaatgacactgaaacctacacttcaaaacggtt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13996437 244 - 49578535 tgcggtggctcacgcctataatcccagcactttgggaggctgaggtgggcagatcac--gaggtcaagagatcaaga-------------------------------ccatcctggccaacatg-gtgaaaccccatctct------------------------actaaaaatacaa--aaattagctgggcgtggtggcaagtgtctgtagtccc------agctact------tggg-----------aggctgaggcaggagaatcgct-tgaacctg---ggaggcggaggttgca-------gtgagccaggatcacgccactg-------cacttca-------- i calJac3.chr19 I 1 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36208874 548 + 80974532 I e papAnu2.chr1 16534687 0 - 220367699 C e nomLeu3.chr5 140002451 2749 - 143122389 M a score=70269.000000 s hg38.chr1_KI270759v1_alt 9663 80 + 425601 caaggtaCattgcttgagcctaggagtttgagaccaggctgggcgacagagtgagaccttgtctgtaaaagaaaaaaaaa- s panTro4.chr1 224749610 80 + 228333871 caaggtagattgcttgagcctaggagtttgagaccaggctgggcgacagagtgagaccttgtctctaaaagaaaaaaaaa- i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16722020 80 - 229590362 caaggtagactgcttgagcctaggagtttgagaccaggctgggcgacatagtgagacctcatctctaaaagaaaaaaaaa- i rheMac3.chr1 C 0 I 176 s macFas5.chr1 223482087 80 - 227556264 caaggtagactGcttgagcctaggagtttgagaccaggctgggcgacatagtgagacctcatctctaaaagaaaaaaaaa- i macFas5.chr1 C 0 I 5 s chlSab2.chr25 82333126 79 + 85787240 caaggtggattgcttgagcctaggagttggaga-caggctgggcgacatagtgagacctcacctctaaaagaaaaaaaaa- i chlSab2.chr25 C 0 I 7 s calJac3.chr19 13996681 44 - 49578535 -------------------------------------gctttgtgacagagtgagacgctgtttccaaaaagaaaaaaaaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36208874 548 + 80974532 I e papAnu2.chr1 16534687 0 - 220367699 C e nomLeu3.chr5 140002451 2749 - 143122389 M e ponAbe2.chr1 226113314 412 - 229942017 M a score=130049.000000 s hg38.chr1_KI270759v1_alt 9743 170 + 425601 ggccgggtgcagtggctcatgcctgtaatcccagcactttgggaggcctaggcaggtggatcacctgaggtcaggagttcaagaccagcctggccaatgtggtgaaaccccgtctctactaaaaatacacaaattagctggacatggtggcgggcacctgtaatcccagc s panTro4.chr1 224749690 170 + 228333871 ggccgggtgcagtggctcatgcctgtaatcccagcactttaggaggcctaggcaggcggatcacctgaggtcaggatttcaagaccagcctggccaatgtggtgaaacctcgtctttgctaaaaatacacaaattagctggacatggtggcgggcacctgtaatcccagc i panTro4.chr1 C 0 C 0 s macFas5.chr1 223482172 170 - 227556264 ggctgggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatgcaaaaattagctggatgtggtggcacatgcctgtaatcccagc i macFas5.chr1 I 5 C 0 s chlSab2.chr25 82333212 170 + 85787240 ggctgggagcagtggctcatgcctgtaatcccatcactttgggaggccgaggcaggcagatcacttgaggtcaggagttcaagaccagcctggcccacatggtgaaaccctgtctctactaaaaatgcaaaaattagctggatgtggtggcgggcatctgtaatcccagc i chlSab2.chr25 I 7 C 0 s calJac3.chr19 13996725 170 - 49578535 ggctgggcgtggtggctcattcctgtaatcccagcactttgggaggctgacgcaggcagatcacatgaagtcaggagttcaagacaagcctggccaacatggtgaaaccctgtctctactaaaaatataaaaatgagccaggcacagtgcctcatgcctgcagtctcagc i calJac3.chr19 C 0 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36208874 548 + 80974532 I e rheMac3.chr1 16722100 176 - 229590362 I e papAnu2.chr1 16534687 0 - 220367699 C e nomLeu3.chr5 140002451 2749 - 143122389 M e ponAbe2.chr1 226113314 412 - 229942017 M a score=44536.000000 s hg38.chr1_KI270759v1_alt 9913 39 + 425601 tacttgggaggctaaggcaggagactctcctgaactcag s panTro4.chr1 224749860 39 + 228333871 tacttgggaggctaaggcaggagactctcctgaactcag i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140005202 39 - 143122389 tatttgggaggttaaggcaggagactttcctgaactcag i nomLeu3.chr5 M 2749 C 0 s macFas5.chr1 223482342 39 - 227556264 tactcgggaggctgaggcaggagaatctcctgaacctag i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82333382 39 + 85787240 tactcgggaggctgaggcaggagaatctcctgaacccag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13996895 39 - 49578535 aacttgggaggctgaggcaggagaatctttagaacctag i calJac3.chr19 C 0 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36208874 548 + 80974532 I e rheMac3.chr1 16722100 176 - 229590362 I e papAnu2.chr1 16534687 0 - 220367699 C e ponAbe2.chr1 226113314 412 - 229942017 M a score=101863.000000 s hg38.chr1_KI270759v1_alt 9952 62 + 425601 gaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggtgac-agagtgc s panTro4.chr1 224749899 62 + 228333871 gaggcggaggttgcagtgagccaagattgcaccactgcactccagcctgggtgac-agagtgc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140005241 62 - 143122389 gaggcggaggttgcagtgagccaagattgcaccattacactccagcttgggtgac-agagtgc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223482381 63 - 227556264 gaggcgggggttgcagtgagctgagattgcaccactgcactccagcctgggtgacaagagtgc i macFas5.chr1 C 0 I 7 s papAnu2.chr1 16534687 63 - 220367699 gaggcagaggttgcagtgagccgagattgcaccgctgcactccagcctgggtgacaagagtgc i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82333421 62 + 85787240 gaggtggaggttgcagtgagccgagattgcactactgcactccagcctgggtgac-agagtgc i chlSab2.chr25 C 0 I 1 s calJac3.chr19 13996934 56 - 49578535 gaggcggaggttgcagtgagccgagatcacgccagtgcactccagcctgggtaac-a------ i calJac3.chr19 C 0 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36208874 548 + 80974532 I e rheMac3.chr1 16722100 176 - 229590362 I e ponAbe2.chr1 226113314 412 - 229942017 M a score=247837.000000 s hg38.chr1_KI270759v1_alt 10014 127 + 425601 aaaaaaaaaaaaaaaagaaaaagaaaaatatcagtcgggtgtggtggtgcacgtc-gtggtcccagatactcaagaggctgctgacgtgggaggattacttgagccccgtagatggaggctgcagtaa s panTro4.chr1 224749961 110 + 228333871 aaaaa-----------------gaaaaatatcagtcgggtgtggtggtgcatgtc-gtggtcccagatactcaagaggctgctgacgtgggaggatcacttgagccccgtagatggaggctgcagtaa i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140005303 124 - 143122389 aaaaa----aaaaaaaaaaaaagaaaaaaatcagccgggtgtggtggtgcatgtctgtggtcccagatactcaagaggctgctgacgtgggagaatcacttgagccccagagatggaggctgcagtga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16722276 128 - 229590362 AAAAAAAAAAAGAAAAGaaaaagagaaaaatcaaccaggtgtggtggtgcacatctgtggtcccagatactcaggaggctgctgaggtgagagaatcatttgagccccagagatggaggctacagtga i rheMac3.chr1 I 176 C 0 s macFas5.chr1 223482451 128 - 227556264 aaagaaaaaaagaaaagaaaaagagaaaaatcagccaggtgtggtggtgcacatctgtggtcccagatactcaggaggctgctgaggtgagagaatcatttgagccccagagatggaggctgcagtga i macFas5.chr1 I 7 C 0 s papAnu2.chr1 16534751 125 - 220367699 aaaaaaaaaaagaaaagaaaaagagaaaaatcagccagat---gtggtgcacatctgtggtcccagatactcagaaggctgctgaggtgagagaatcatttgagccccagagatggaggctgcagtga i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82333484 128 + 85787240 aaaaaaaaaaagaaaagaaaaagagaaaaatcagccaggtgtggtggtgcacatccgtggtcccagatactcaggaggctgctgaggtgagagaatcacttgagccccagagatggagactgcagtga i chlSab2.chr25 I 1 C 0 s calJac3.chr19 13996990 114 - 49578535 --------------aaaaagaagagaaaaatcaactgggtatggtggggcacgtctgtgggcccagctgctcaagaggctgctgaggtgggagaattacttgagccccagagatggcagctacagtga i calJac3.chr19 C 0 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36208874 548 + 80974532 I e ponAbe2.chr1 226113314 412 - 229942017 M a score=143421.000000 s hg38.chr1_KI270759v1_alt 10141 50 + 425601 gccgtgatggtgccactgcactgcagcctgggcaacagaTGAGAGAGTAa s panTro4.chr1 224750071 50 + 228333871 gccatgatggtgccactgcactgcagcctgggcaacagaTGAGAGAGAAa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226113726 50 - 229942017 gccatgatcgtgccactgcactgcagcctgggcaacagatgagagagaaa i ponAbe2.chr1 M 412 C 0 s nomLeu3.chr5 140005427 50 - 143122389 gccatgatcgtgccactgcactgtggcctgggcaacagaTGAGAGAGAAa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16722404 48 - 229590362 tccatgattgtgccactgcactgcagcctggacaacagat--gagaGAAa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223482579 48 - 227556264 tccatgattgtgccactgcactgcagcctggacaacagaT--GAGAGAAa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16534876 50 - 220367699 gccatgattgtgccactgcactgcagcctgggcaacagatgagagagaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82333612 50 + 85787240 gccatgatcgtgccactgcactgcagcctgggcaacagatgtgagaGAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13997104 50 - 49578535 gccatgatcacgccactgcactctagcctgggcaacagaTGAGAGAGAAA i calJac3.chr19 C 0 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36208874 548 + 80974532 I a score=760176.000000 s hg38.chr1_KI270759v1_alt 10191 238 + 425601 aaaatggttcaaatggcaaattttatggatacttcgccacaataaaaa-TAAATTTCTATTAAAGTACATATCATTA--ATTCCACAAATGCAAATAGAATACCAATCAAAGGAAGTCCTCAGAACA--------CAGACTGCACAGTAAAGTGTGGGCCTAACTAGACCACAGCCTGTTTCATGTCACCAGGCTTAGTGGATGACCGCACTGCAAGGAAAATTGCTGAGACTGAGTCATGTTTTGGTT s panTro4.chr1 224750121 238 + 228333871 aaaatggttcaaatggcaaattttatggatactttgccacaataaaaa-TAAATTTCTATTAAAGTACATATCATTA--ATTCCACAAATGCAAATAGAATACCAATCAAAGTAAGTCCTCAGAATA--------CAGACTACACAGTAAAGTGTGGGCCTAACTAGACCACAGCCTGTTTCATGTCACCAGGCTTAGTGGATGACCGCACTGCAAGGAAAATTGCTGAGACTGAGTCATGTTTTGGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226113776 234 - 229942017 aaaatggttcaaatggcaaattttatggatactttgccacaataaaaG-TAAATTTCTTTTAAAGTATATATTATTA--ATTCCACAAATGCAAATAGAATAC----CAAAGTAAGTCCTCAGAACA--------CAGACTACACAGTAAAGTGTGGGCCTAACTAGACCACAGCCTGTTTCATGTCACCAGGCTTAGTGGATGACTGCACTGGAAGGAAAATTGCTGAGACTGAGTCATGTTTTGGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140005477 234 - 143122389 aaaatggttcaaatggcaaattttatggatacttcgccacgataaaaa-TAAATTTCTATTAAAGTATATATCATTA--ATTCCACAAATGCAAATAGAATAC----CAAGGTAAGTCCTCAGAACA--------CAGACTACACGGTAAAGTGTGGGCCTAACTAGACCACAGCCTGTTTCATGTCACCAGGCTTTGCGGATGACTGCACTGCAAGGAAAATTGCTGAGACTGAGTCATGTTTTGGTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16722452 237 - 229590362 aacatggttcaaatggcaaattttatggatacttcgccacaataaaaa-TAAATTCCTATTAAAGTATATATCATTA--ATTTCACAAATGCAAATAGAATACCAATCAAAGTAAGTCCTCAGAGCA--------CAGACTACACAGTAGAGTGT-GGCCTAACTAGACCACAGCCTGTTTCAGGTCACCAGGCTTAGTGGATGACCGCACTGCAAGGAAAATTGCTGAGACTGAGTCAAGTTTTGGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223482627 237 - 227556264 aacatggttcaaatggcaaattttatggatacttcgccacaataaaaa-TAAATTCCTATTAAAGTATATATCATTA--ATTTCACAAATGCAAATAGAATACCAATCAAAGTAAGTCCTCAGAGCA--------CAGACTACACAGTAGAGTGT-GGCCTAACTAGACCACAGCCTGTTTCAGGTCACCAGGCTTAGTGGATGACCGCACTGCAAGGAAAATTGCTGAGACTGAGTCAAGTTTTGGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16534926 237 - 220367699 aaaatggttcaaatggcaaattttatggaTACTTcgccacaataaaaa-taaattcctattaaAGTATATATCATTA--ATTCCACAAATGCAAATAGAATACCAATCAAAGTAAGTCCTCAGAGCA--------CAGACTACACAGTAGAGTGT-GGCCTAACTAGACCACAGCCTGTTTCAGGTCACCAGGCCTAGTGGATGACCGCACTGCAAGGAAAATGGCTGAGACTGAGTCAAGTTTTGGTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82333662 236 + 85787240 AACATGGTTCAAATGGCAAATTTTATGGATACTT-GCCACAATAAAAA-TAAATTCCTATTAAAGTATATATCACTA--ATTTCACAAATGCAAATAGAATACCAATCAAAGTAAGTCCTCAGAGTA--------CAGACTACATAGTAGAGTGT-GGCCTAACTAGACCACAGCCTGTTTCAGGTCACCAGGCTTAGTGGATGACCGCACTGCAAGGAAAGTTGCTGAGACTGAGTCATGTTTTGGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13997154 236 - 49578535 AAAATGCTTCAAATGGCAAATTTTATGGATACTTCTCCACAATAAAAG-TAAATTTCTATTAAAGTATAGGTCATTA--ATTCTACAAATGCAAATAGAATACCAA-TAAAATAAGTACTCAGAGCG--------CAGACGACACGGTAGAGTTT-GGCTTAACTGGACTGCAGCCCGTTTCATGTCACCAGGCTTAGTGGATGAGGGCACTGCAAGGGGAGTTGCTGAGACTGAGCCATGTTTTGGTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36209422 234 + 80974532 aaaagagttgaaatggtaaattttatgtatattttaccataataaaaGTTAGATTTTCattattatatatataaatattattttat-----tatatatCATGTTATTATAGGTAA------AGGACAGGTATATGTGGACTAGTCAGTATAGTGC-CACCTAACTAGACCACAGCCTGTTTCATGTCACAGGCTCTTCTG--TGATTGCCCAATGAGGAAGATTGCTGAGACCAGGT-ATATTTTGGTT i canFam3.chr7 I 548 C 0 e mm10.chr1 178638149 344 + 195471971 I a score=22946.000000 s hg38.chr1_KI270759v1_alt 10429 15 + 425601 CTCTGGCTGCTTC---T-A s panTro4.chr1 224750359 15 + 228333871 CCCTGGCTGCTTC---T-A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226114010 18 - 229942017 CCCTGGCTGCttctttt-t i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140005711 15 - 143122389 CCCTGGCTGCTTC---T-A i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16722689 15 - 229590362 CCCTGGCTGCTGC---tt- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223482864 15 - 227556264 CCCTGGCTGCTGC---tt- i macFas5.chr1 C 0 I 336 s papAnu2.chr1 16535163 14 - 220367699 CCctggctgctgc---t-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82333898 14 + 85787240 CCCTGGCTGCTGC---C-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13997390 15 - 49578535 CCTTGGCTGCTGC---T-G i calJac3.chr19 C 0 I 966 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36209656 0 + 80974532 C a score=25718.000000 s hg38.chr1_KI270759v1_alt 10444 9 + 425601 ttttttttt s panTro4.chr1 224750374 9 + 228333871 ttttttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226114028 9 - 229942017 ttttttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140005726 9 - 143122389 ttttttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16722704 9 - 229590362 ttttttttt i rheMac3.chr1 C 0 I 266 s macFas5.chr1 223483215 9 - 227556264 ttttttttt i macFas5.chr1 I 336 C 0 s papAnu2.chr1 16535177 7 - 220367699 --ttttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82333912 9 + 85787240 ttttttttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13998371 9 - 49578535 tctttcttt i calJac3.chr19 I 966 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36209656 0 + 80974532 C a score=802533.000000 s hg38.chr1_KI270759v1_alt 10453 273 + 425601 tttttagatggagtttcattcttgttgcccaggata---------gagtgcagtggtgtg---------------aacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagatgggattacaggcacccgccaccatgcctggctaa-tttttttgtatttttagtagagatggggcctcaccatgttggccaggttggtcttgaactcctgaccccaggtgatccgcctgcctcggtctcccaaagttctgggattacaggcatgagccaccgcgtccggc s panTro4.chr1 224750383 273 + 228333871 tttttagatggagtttcattcttgttgcccaggata---------gagtgcagtggtgtg---------------aacctctgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagatgggattacaggcacctgccaccatgcctggctaa-tttttttgtatttttagtagagatggggcctcaccatgttggccaggttggtcttgaactcctgaccccaggtgatccgcctgcctcggtctcccaaagttctgggattacaggcatgagccaccgcgtcctgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226114037 289 - 229942017 tttttagatggcgtttcattcttgttgcccaggcta---------gagtgcagtggtgcgatctcggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctctgaagtagctgggattacaggcgcccgccaccatgcctggctaattttttttgtatttttagtagagacggggcctcatcatgttggccaggttggtcttgaactcctgacctcaggtgatccacctgcctcggtctcccaaagttctgggattgcaggcttgagccaccgtgcctggc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140005735 297 - 143122389 ttttaagatggtatttcattctggttgcccaggctagagtgcagtgagtgcagtggcgtgatctcggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctccgaagtagctgagattacaggcgcccgccaccatgcctggctaa-tttttttgtatttttagtacagacagggcctcaccatgttggccaggttggtcttgaactcctgacctcaggtgatctgcctgcctcggtctcccaaagttctaggattacaggcgtgagccactgcgcccggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16722979 288 - 229590362 tttttagatggagtttcattcttgctgcccaggctg---------gagtgcagtggtgcgttctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctaggcagctgggattacaggtgcccgccatcacacatgggtaa-tttttttgtgtttttagtagagacggggcctcaccatgttggtcaggttggtcttgaactcctgacctcaggtgatccgcctgccttggtctcccaaagttctgggattacaggcatgagccaccacaccaggc i rheMac3.chr1 I 266 C 0 s macFas5.chr1 223483224 288 - 227556264 tttttagatggagtttcattcttgctgcccaggctg---------gagtgcagtggtgcgttctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctaggcagctgggattacaggtgcccgccatcacacatgggtaa-tttttttgtatttttagtagggacggggcctcaccatgttggtcaggttggtcgtgaactcctgagctcaggtgatccgcctgccttggtctcccaaagttctgggattacaggcatgagccaccacaccaggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16535184 288 - 220367699 tttttagatggagtttcattcttgctgcccaggctg---------gagtgcagtggtgcgttctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctaagcagctgggattacaggtgcccgccatcacacatgggtaa-tttttttgtatttttagtagagacagggcctcaccatgttggtcaggttggtcttgaactcctgacctcaggtgatccgcctgccttggtctcccaaagttctgggattacaggcgtgagccaccacaccaggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82333921 288 + 85787240 tttttagatggaatttcattcttgctgcccaggctg---------gagtgcagtggtgcgacctcggctcactgtaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggtgcccgccatcacgcatgggtaa-tttttttgtatttttagtagagacagggcctcaccatgttggtcaggttggtcttgaactcctgacctcaggtgatctgcctgccttggtctcccaaagttctgggattacaggcgtgagccaccacaccaggc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13998380 283 - 49578535 ttttcag------tttcgttcttattgcccaggcta---------gagggcagtggcgcaatctctgctcactgcaacctccacttcccaggttcaagcggttttcctgccttagcctcccaaatagctgggattacaggcactcgccaccacatctggctaaagttttttgtatttttagtagagttggggtttcaccatgttggccaggttggtctcgaactcctgacctaaggtgatccccctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccacgcctggc i calJac3.chr19 C 0 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36209656 0 + 80974532 C a score=556858.000000 s hg38.chr1_KI270759v1_alt 10726 173 + 425601 cCCTGGGTGCTTCTTATTTTGGAAAATTCTTCCCCAAATGAGACTAATTTTGGCTCAGTAGAAAAATTCTCTCACCTCTTGTCCCGAAGGT-GAAAATCCACCTCAATGATTTTC-AATTTTTTTTTAATCATCATCGGCCTCTT-TTATTTTTTT-TCTGATA-----------GAATGTGCTTTAA s panTro4.chr1 224750656 173 + 228333871 cCCTGGCTGCTTCTTATTTCGGAAAATTCTTCCCCAAATGAGACTAATTTTGGCTCAGTAGAAAAATTCTCTCACCTCTTGTCCCAAAGGT-GAAAATCCACCTCAATGATTTTC-AATTTTTTAAAAATCATCATCGGCCTCTT-TTATTTTTTT-TCTGATA-----------GAATGTGCTTTAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226114326 174 - 229942017 cCCTGGCTGCTTCTTATTTTGGAAAATTCTTCCCCAAATGAGACTAATTTTGGCTCAGTAGAAAAATTCTCTCACCTCTTGTCCCAAAGGTGGAAAATACACCTCAATGATTTTCAAATATTTTTTGAATCATCATCGGCCTCTT-TTA-TTTTTT-TCTGATA-----------GAATGTGCTTTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140006032 174 - 143122389 cCCTGGCTGCTTCTTATTTCGGAAAATTCTTCCCCAAATGAGACTAATTTTGGCTCAGTAGAAAAATTCTCTCACCTCTTGTCCCAAAGGT-GAAAATTCATCTcaatgattttcgaatattttttgaatcatcatcggcctctt-ttattttttt-tctgata-----------gaatgtgctttaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16723267 174 - 229590362 cCCTGGCTGCTTCTTCTTTCAGAAAAGTATTCCCCAAATGAGACTAATTTTGGCTCAGTAGAAAAATTCTCTCACCTCTTGTCCCAAAGGT-GAAAATCCACCTCAATGATTTTCAATTATTTTTTGAATCATCATCGGCCTCTT-TTATTTTTTT-TCTGACA-----------GAATGTGCTTTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223483512 174 - 227556264 cCCTGGCTGCTTCTTATTTCAGAAAAGTATTCCCCAAATGAGACTAATTTTGGCTCAGTAGAAAAATTCTCTCACCTCTTGTCCCAAAGGT-GAAAATCCACCTCAATGATTTTCAATTATTTTTTGAATCATCATCGGCCTCTT-TTATTTTTTT-TCTGACA-----------GAATGTGCTTTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16535472 174 - 220367699 ccctGGCTGCttcttatttcagaaaaatattccCCAAATGAGACTAATTTTGGCTCAGTAGAAAAATTCTCTCACCTCTTGTCCCAAAGGT-GAAAATCCACCTCAatgattttcaattattttttgaatcaccatcggcctctt-ttattttttt-tctgaca-----------gaatGTGCTTTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82334209 174 + 85787240 cCCTGGCTGCTTCTTATTTCAGAAAAGTATTCCCCAAATGAGACTAATTTTGGCTCAGTAGAAAAATTCTCTCACCTCTTATCCCAAAGGT-GAAAATCCACCTCAATGATTTTCAATTATTTTTTGAATCATCGTCGGCCTCTT-TTATGTTTTT-TCTGACA-----------GAATGTGCTTAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13998663 178 - 49578535 cCATGGCTGCTTCTTATTTGGGAAAATTATTTCCCAAATAAGACTAATTTTGGCTCAGTGGAAAAATTCCCTTACCTCTCGTACCAAAGGT-GAAAATCCACCTCAGTGATTTTCGAA---TTCTTAAACCATCATCAGCCACTT-----TTCTTT-CCTGACAAGATGCCCTGTAAATGCACTGTAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36209656 168 + 80974532 CCCTGG-----TCTTATTTAGGAAACGTATTCTCCAGATGACACTCATTTTGGCTTAAGAGAAAAATTCTC-CACCTCTTTTCCC-AAGAT-GAAAACCCAGCTCAGTGATCCAC-ATTCTTTTTGGAACTATCACCAACCTCTTGTTATTTTTTTATCTGATA-----------AAATTTGCTTTAA i canFam3.chr7 C 0 I 584 e mm10.chr1 178638149 344 + 195471971 I a score=51237.000000 s hg38.chr1_KI270759v1_alt 10899 18 + 425601 GAGATAGTTGTAGCCTGT s panTro4.chr1 224750829 18 + 228333871 GAGACAGTTGTAGCCTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226114500 18 - 229942017 GAGATAGTTGTAGCCTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140006206 18 - 143122389 gagatagttgtagcctgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16723441 18 - 229590362 GAGATAGTTGTAGCCTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223483686 18 - 227556264 GAGATAGTTGTAGCCTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16535646 18 - 220367699 GAGATAGTTGTAGCCTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82334383 18 + 85787240 GAGATAATCGTAGCCTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13998841 18 - 49578535 CAGATGGTCATAGGCCGT i calJac3.chr19 C 0 C 0 e mm10.chr1 178638149 344 + 195471971 I e canFam3.chr7 36209824 584 + 80974532 I a score=473113.000000 s hg38.chr1_KI270759v1_alt 10917 140 + 425601 TTCCTATTCCTGCATTTATAAAGTAACAATTCATTTATCCTTGCCAGCTGTCTGCAAGCTTAAAATACCTAGACACATCTCACCACCCAGTAGTGTCCTTGACTGGCTTGGATGGCCAGTTTCCCTATACTGATTTGGTA s panTro4.chr1 224750847 140 + 228333871 TTCCTATTCCTGCATTTATAAAGTAACAATTCATTTATCCTTGCCAGCTGTCTGCAAGCTTAAAATACCTAGACACATCTCACCACCCAGTAGTGTCCTTGACTGGCTTGGATGGCCAGTTTCCCTATACTGATTTGGTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226114518 140 - 229942017 TTCCTATTCCTGCATTTATAAAGTAACAACTCATTTATCCTTGCCAGCTATCTGCAAGCTTAAAATACCTAGACACATCTCACCACCCAGTAGTGTCCTTGACTGGCTTGGATGGCCAGTTTCCCTACACTGATTTGGTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140006224 140 - 143122389 ttcctattcctgcatttataaagtaacaattcatttatccttaccagctatctgcaagcttaaaatacctaggaacatctcaccacccagtagtgtccttgactggcttggatgaccagtttccctacactgatttggta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16723459 140 - 229590362 TTCCTATTCCTGCATTTATAAAGTAACAAATCATTTATCCTTGCCAGGTATCCACAAGCTTAAAATACCTAGACACATCTCACCACCCAGTGGTGTCCTTGACTGGCTTGGATGGCCAGTTTCCCTACATTGATTTGGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223483704 140 - 227556264 TTCCTATTCCTGCATTTATAAAGTAACAAATCATTTATCCTTGCCAGGTATCCACAAGCTTAAAATACCTAGACACATCTCACCACCCAGTGGTGTCCTTGACTGGCTTGGATGGCCAGTTTCCCTACATTGATTTGGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16535664 140 - 220367699 TTCCTATTCCTGCATTTATAAAGTAACAAATCATTTATCCTTGCCAGCTATCCACAAGCTTAAAATACCTAGACACATCTCACCACCCAGTGGTGTCCTTGACTGGCTTGGATGGCCAGTTTCCCTACATTGATTTGGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82334401 140 + 85787240 TTCCTATTCCTGCATTTATAAAGTAACAAATCATTTATCCTTGCCAGCTATCCACAAGCTTAAAATACCGAGACACATCTCACCACCCAGTGGTGTCCTTGACTGGCTTGGATGGCCAGTTTCCCTACATTGATTTGGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13998859 139 - 49578535 TTCCTGTCCCTGCATTTGTAAAGTAACGATTCATTTATCCTTGCCACCTAACTGCAAGCTTAAAACATCTAGACACAT-TAACCACGTGGCAGTGTCCCTGACTGGCTTGGATGGCCACTGTCCCTGCACTGATTTGGTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36210408 129 + 80974532 TTCATACTCctgcattgattcagtaacaattcattcatcctc--------cctgcg---ccaaagtatccagacacctctgaccacctggcagtgtttgtgattggctgggacagccagtctctccacactgatctgatc i canFam3.chr7 I 584 C 0 e mm10.chr1 178638149 344 + 195471971 I a score=70410.000000 s hg38.chr1_KI270759v1_alt 11057 19 + 425601 CAATTGCTACATTTTATAG s panTro4.chr1 224750987 19 + 228333871 CAATTGCTCCATTTTATAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226114658 19 - 229942017 CAATTGCTACATTTTATAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140006364 19 - 143122389 caattgctacattttatag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16723599 19 - 229590362 CAACTGCTACATTTTATAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223483844 19 - 227556264 CAACTGCTACATTTTATAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16535804 19 - 220367699 CAACTGCTACATTTTATAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82334541 19 + 85787240 CAACTGCTACATTTTATAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13998998 19 - 49578535 TAATTGCCACATTTTGTAT i calJac3.chr19 C 0 I 308 s mm10.chr1 178638493 19 + 195471971 CGGTTGCTGCTTCTGATAC i mm10.chr1 I 344 C 0 s canFam3.chr7 36210537 19 + 80974532 taattgctgcatttgatat i canFam3.chr7 C 0 C 0 a score=2939036.000000 s hg38.chr1_KI270759v1_alt 11076 760 + 425601 AATACTTAAATATGAATACAAGTGTGATTTC--TGTGGGGCTTTTGACAAACCAGAACTAGTTCAAGGACCCTCACAATCACCTTCAAGGGA------------------------------CAAAA---ACCTGCATTTTGTGTGTTTCCTGGTGCGTTTCCTTTAAGAGTCCTGGCGCCTGGGCTGTCCAGCCCGGGTGGAGGGACTCCC-GAGACCTGGTGATGGATG-CTGTAGTCAGGAGTGCATATTGGATCTGTTACACGGTGGTGATATACGATTTCAACATTTCAGGGTTGATTTGGATTTTCTGTACTCCCTGCCTGGAATTTTCCTGCTGTGTTG----TTTTGTGCTTTACTGTTCAACAAGAGGAAAATAAATCTAGAAACCTGCTTAAAAATAGACATCCTGTTTTCAATTCTCTATCATTAAAAGATCTTAAAAGctagaatttagttctcttcccggtagaaggaaggagttgcgctaaggtcccttcttagaaattagctctagaaatcctaaaattctaGCTAACCAACCACAGTGTTCACGGG-CCTAATATCCCTTACATTTTTCTTGTCTGACAGGCCCAGAGGGCTCACTGTCTGTGAGCTTTCA-CGGGGTTGTTGCTATCCCCCAGGGTTGATTGATCTGTTTATTCTAAGCTTGAGGCCAGAGCTGGAAGGGAGGCCGTTTGTTTTGGGCACTGCTGAGAAAAACAGACTAATCACCTAAATACCACCTTGGGGAATGAAGTTACTTGAAAAGAAACTGAATGGAGCCTGGGCTTTTA s panTro4.chr1 224751006 790 + 228333871 AATACTTAAATATGAATACAAGTGTGATTTC--TGTGGGGCTTTTGACAAACCAGAACTAGTTCAAGGACCCCCACAATCACCTTCAAGGGAACAAGGACCCCCATGATCACCTTCAAGGGACAAAA---ACCTGCGTTTTGTGTGTTTCCTGGTGCGTTTCCTTTAAGAGTCCTGGCGCCTGGGTTGTCCAGCCCGGGTGGAGGGACTCCC-GAGGCCTGGTGATGGATG-CTGTAGTCAGGAGTGCATATTGGATCTGTTACACGGTGGTGATATACGATTTCAACATTTCAGGGTTGATTTGGATTTTCTGTACTCCCTGCCTGGAATTTTCCTGCTGTGTTG----TTTTGTGCTTTACTGTTCAACAAGAGGAAAATAAATCTAGAAACCTGCTTAAAAATAGACATCCTGTATTCAATTCTCTATCATTAAAAGATCTTAAAAGctagaatttagttctcttcccggtagaaggaaggagttgcgctaagttcccttcttagaaattagctctagaaattctaaaattctaGCTAACAAATCACAGTATTCACGGG-CCTAATATCCCTTACATTTTTCTTGTCTGACAGGCCCAGAGGGCTCACTGTCTGTGAGCTTTCG-CGGGGTTGTTGCTATCCCCCAGGGTTGATTGATCTGTTTATTCTAAGCTTGAGGCCAGAGCTGGAAGGGAGGCCGTTTGTTTTGGGCACTGCTGAGAAAAACAGACTAATCACCTAAATACCACCTTGGGGAATGAAGTTACTTGAAAAGAAACTGAATGGAGCCTGGGCTTTTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226114677 789 - 229942017 AATACTTAAATATGAATACAAGTGTGATTTC--TGTGGGGCTTTTGACAAACCAGAACTAGTTCAAGGACCCCCACAATCACCTTCAAGGGAACAAGGACCCCCACGATCACCTTCAAGGGACGAAA---ACCTCCATTTTGTGTGTTTCTTGGTGCGTTTCCTTTAAGAGTCCTGGTGCCTGGGTTGTCCAGCCTGGGTGGAGGGACTCCT-GAGGCCTGGTGATGGATG-CTGTAGTCAGGAGTGCATATTGGATCTGTTACACGGTGGTGATATACGATTTCAACATTTCAGGGTTGATTTGGATTTTCTGTACTCCCTGCCTGGAATTTTCCTGCTGTGTTG----TTTTGTGCTTTACTGTTCAACAAGAGGAAAATAAATCTAGAAACCTGCTTAAAAATAGACATCCTGTATTCAATTCTCTATCATTAAAAGATCTTAAAAGctagaatttaattctcttcccggtagaaggaaggagttgcgctaaggtcccttcttagaaattagctctagaaattctaaaattctaGCTAACAAATCACAGTATTCACAGG-CCTAATATCCCTTACATTTTTCTTGTCTGACAGGCCCAGAGGGCTCATTGTCTGTGAGTTTTCA-CGGGGTTGTTGCTATCCCCCAGGGTTGATTGATCTGTTTATTCTAAGCTTGAGGCCAGAGCTGGAAGGAAGGCCGTTTGTTTTGGGCACTGCTGAGAAAAACAGACTAATCACCTAAATACCACCTTGGGGAATGAAGTTACTTGAAAAGAAACTGAATGGAGCCTGGGC-TTTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140006383 788 - 143122389 aatacttaaatatgaatacaagtgtgatttc--cgtggggcttttgacaaacgagaactagttcaaggacccccgcaatcaccttcaaggGAACAAGGACCCCCATGATCACCTTCAAGGGACAAAA---ACCTGCATTTTGTGTGTTTCCTGGTACGTTTCCTTTAAGAGTCCTGGCGCCTGGGTTGTCCAGCCCGGGTGGAGGGACCCGT-GAGGCCTGGTGATGGATG-CTGTAGTCAGGAGTGCATATTGGATCTGTTACATGGTGGTGATATACGATTTC-ACATTTCAGGGTTGATTTGGGTTTTCTGTACTCCCTGCCTGGAATTTTCCTGCTGTGTTG----TTTTGTGCTTTACTGTTCTACAAGAGGAAAATAAATCTAGAAACCTGCTTAAAAATAGACATCCTGTATTCAATTCTCTATCATTAAAAGATCTTAAAAGCTAGAATTTAATTCTCTTCCCAGCAGAAGGAAGGAGTTGCGCTAAAGTCCCTTCTTAGAAATTAGCTCTAGAAATTCTAAAATTCTAGCTAACAAATCACAGTATTCACGGG-CCTAATATCCCTTA-ATTTTTCTTGTCTGACAGGCCCAGAGGGCTCATTGTCTGTGGGTTTTCT-CGAGGTTGTTGCTATCCCCCAGGGTTGATTGATCTGTTTATTCTAAGCTTGAGGCCAGAACTGGAAGGGAGGCCGTTTGTTTTGGGCACTGCTGAGAAAAACAGACTAATCACCTAAATACCACCTTGGGGAATGAAGTTACTTGAAAAGAAACTGAATGGAACCTGGGCTTTTA i nomLeu3.chr5 C 0 M 1625 s rheMac3.chr1 16723618 790 - 229590362 AATGCTTAAATATGAATACAAGTGTGATTTC--CGTGGGGCTTTTGACAAACCAGAGCTAGTTCAAGGACCCCCACAATCATCTTCAAGGGAACAAGGGCCCCCATGATCACCTTCAAGGGAAAAAAC--CCCTGCATTTTGTGTGTTTCCTGGTGCGTTTCCTTTAAGAGTCCTGGCGCCTGGGTTGTCCAGCCTGGGTGGAGGGACTCCC-GAGGCCTGGTGATGGATG-CTGTAGTCAGCAGTGCATATTGGATCTGTTACACGGTGGTGATATACGATTTCAACATTTCAGGGTTGATTTGGATTTTCTGTACTCCCTGCCTGGAATTTTCCTGCTGTGTTG----TTTTGCACTTTACTGTTCAACAAGAGGAAAATAAATCTAGAAACCTGCTTAAAAATAGACATCCTGTATTTGATTCTGTATCATTAAAAGATCTTAAAAGCTAGAATTTAATTCTCTTCCCGGCAGAAGGAAGGAGTTGCGCTAAGGTCCCTTCTTAGAAATTAGCTGTAGAAATTCTGAAATTCTAGCTAACAAATCACAGCCTTCACTGG-CCTCACATCCCTTACA-TTTTCCTGTCTGACAG-CCCCGAGGGCTCATTGTCTGTGGGTTTTCATCTGGGTCGTTGCTGTCCCCCAGGGTTGATTGATCTGTTTATTCTAAGCTTGAGGCCAGAGCTGGAAGGGAGGCCGTTTGTTTTGGGCACTGCTGAGAAAAACAGACTAATCACCTAAATACCACCTTGGGGAATGAAGTTACTTGAAAAGAAACTGAATGGAGCCTGGGCTTTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223483863 790 - 227556264 AATGCTTAAATATGAATACAAGTGTGATTTC--CGTGGGGCTTTTGACAAACCAGAGCTAGTTCAAGGACCCCCACAATCATCTTCAAGGGAACAAGGGCCCCCATGATCACCTTCAAGGGAAAAAAC--CCCTGCATTTTGTGTGTTTCCTGGTGCGTTTCCTTTAAGAGTCCTGGCGCCTGGGTTGTCCAGCCTGGGTGGAGGGACTCCC-GAGGCCTGGTGATGGATG-CTGTAGTCAGCAGTGCATATTGGATCTGTTACACGGTGGTGATATACGATTTCAACATTTCAGGGTTGATTTGGATTTTCTGTACTCCCTGCCTGGAATTTTCCTGCTGTGTTG----TTTTGCACTTTACTGTTCAACAAGAGGAAAATAAATCTAGAAACCTGCTTAAAAATAGACATCCTGTATTTGATTCTGTATCATTAAAAGATCTTAAAAGCTAGAATTTAATTCTCTTCCCGGCAGAAGGAAGGAGTTGTGCTAAGGTCCCTTCTTAGAAATTAGCTGTAGAAATTCTGAAATTCTAGCTAACAAATCACAGCCTTCACTGG-CCTCACATCCCTTACA-TTTTCCTGTCCGACAG-CCCCGAGGGCTCGTTGTCTGTGGGTTTTCATCTGGGTCGTTGCTGTCCCCCAGGGTTGATTGATCTGTTTATTCTAAGCTTGAGGCCAGAGCTGGAAGGGAGGCCGTTTGTTTTGGGCACTGCTGAGAAAAACAGACTAATCACCTAAATACCACCTTGGGGAATGAAGTTACTTGAAAAGAAACTGAATGGAGCCTGGGCTTTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16535823 790 - 220367699 AATGCTTAAATATGAATACAAGTGTGATTTCTGTGTGGGGCTTTTGACAAACCAGAGCTAGTTCAAGGACCCCCACAATCATCTTCAAGGGAACAAGGACCCCCATGATCACCTTCAAGGGAAAAAAC--CCCTGCATTTTGTG-GTTTCCTGGTGCGTTTCCTTTAAGAGTCCTGGAGCCTGGGttgtccagcctgggtggaggGACTCCC-GAGGCCTGGTGATGGATG-CTGTAGTCAGCAGTGCATATTGGATCTGTTACACGGTGGTGATATACGATTTCAACATTTCAGGGTTGATTTGGATTTTCTGTACTCCCTGCCTGGAATTTTCCTGCTGTGTTG----TTTTGCGCTTTACTGTTcaacaagaggaaaataaatctagAAACTTGCTTTAAAATAGACATCCTGTATTCAATTCTGTATCATTAAAAGCTCTTAAAAGCTAGAATTTAATTCTCTTCTCGGTAGAAGGAAGGAGTTGCGCTAAGGTCCCTTCTTAGAAATTAGCTGTAGAAATTCTGAAATTCTAGCTAACAAATCACAGCCTTCACTGG-CCTCACATCCCTTACA-TCTTCCTGTCTGACGG--CCCGAGGGCTCATTGTCTGTGGGTTTTCATCTGGGTCGTTGCTGTCCCCCAGGGTTGATTGATCTGTTTATTCTAAGCTTGAGGCCAGAGCTGGAAGGGAGGCCGTTTGTTTTGGGCACTGCTGAGAAAAACAGACTAATCACCTCAATACCACCTTGGGGAATGAAGTTACTTGAAAAGAAACTGAATGGAGCCTGGGCTTTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82334560 790 + 85787240 AATGCTTAAATACGAATACAAGTGTGATTTC--CGTGGGGCTTTTGACAAACCAGAGCTAGTTCAAGGACCCCCACAATCATCTTCAAGGGAACAAGGACCCCCATGATCACCTTCAAGGGAAAAAAC--CCCTGCATTTTGTGTGTTTCCTGGTGCGTTTCCTTGAAGAGTCCCGGCGCCTGGGCTGTCCAGCCTGGGTGGAGGGACTCCC-GAGGCCTGGTGATGGATG-CTGTAGTCAGGAGTGCATATTGGATCTGTTACACGGTGGTGATATACGATTTCAACATTTCAGGGTTGATTTGGATTTTCTGTACTCCCTGCCTGGAATTTTCCTGCTGTGTTG----TTTTGTGCTTTACTCTTCAACAAGAGGAAAATAAATCTAGAAACCTGCTTTAAAATAGACATCCTGTATTCAATTCTGTATCATTAAAAGATCTTAAAAGCTAGAATGTAATTCTCTTCCCAGTGGAAGGAAGGAGTTGTGCTAAGGTCCCTTCTTAGAAATTAGCTGTAGAAATTCTGAAATTCTAGCTAACAAATCACAGCCTTCACTGG-CCTCACATCCCTTACA-TTTTCCTGTCTGACGG-CCCCGAGGGCTCATTGTCTGTGGGTTTTCATCTGGGTCGTTGCTGTCCCCCAGGGTTGATTGATCTGTTTATTCTAAGCTTGAGGCCAGAGCTGAAAGGGAGGCCGTTTGTTTTGGGCACTGCTGAGAAAAACAGACTAATCACCTAAATACCACCTTGGGGAACGAAGTGACTTGAAAAGAAACTGAATGGAGCCCGGGCTTTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 13999325 740 - 49578535 AATACTTAAATatgaataaaagtttgatttc--tgtggggcttttgacaaaccagaactagcttaaggactcccacgatcaccttcaaggGA-----------------------------AAAAAACCACCCCGCATTTTGTGTGTTTGCTGGTGCGTTTCCTTTAAGGGTCCTGGCGCCTGGGTAGTCCG---------------------GAGGCCTG--GATGGATG-CTGTAGTCTGGAGTGCATACTGGATCTGTTACACGGTGGTGATAGACGATTTCAACATTTCAGGGTCGATTTGGATTTTCTGTACTCCCTGCCTGGAAGTTTCCTGCCGTATTGTTTTTTTTGTGCTTTACTGTTCAACAAGAGGAAAATAAATCTAGAAACCTGCTTAAAAATAGACATCCTGTATT-AATTCTCTATGATTAAAATATCTTAAAAGCTAGAATTTCATGCTcttatcggtagaaggacggagttgcgctaaggtcccgtcttagaaattagctctagaaattctaaaattctaGCTGACAAATCGCAGTGTTCACGGG-CCTAATATCCCTTACATTTTTCTTGTCTGCCAGGCCCAGAGGGCTCATTGTCTGCCGGTTTTCA-CGGAGTTGTTGCTATCCCCCAGGGTTGATTGATCTGTTTATTCTAAGCCTGAGGCCAGAGCTGGAAGGGAGGCCGTTTGTTTTGGGCACTGCTGAGAAAAACAGACTAATCACCTAAATACCACCTTGGGGAGCAAAGTAACTGGAAAAGAAAGTGGATGGAGCCTGGGA----- i calJac3.chr19 I 308 C 0 s mm10.chr1 178638512 718 + 195471971 GATACTCAAGTGTGGACCAAAGCGTAATT----TGCAAGGGTGTTGACAAACCAAAAACAGTTTGACTACTCCTACCACC-TCTTCAAGGAAACCAGGAG------------------------------GTCTGTGTTTTCC--ATTTCCTTGTGTGTTTCCCTTAAGAGCCCTGG---CTGGG--GCTCATC----------------------GTCCAGTGATGGATGCCTCCAGTCAGGAGCACATATTGGAGCTGTT-----GTGGTGATCTACGACTCCTACGTTTCAGGGCTGATTTGGATTTTCTGTCCTCCCCAGCCAGGATTCTGCTGCTCTGTTG----GTTTGTGCCTTGCTGTTCAACAGGAGAAAAATGAACCCAGAAACAAGCTCAGAAGCGCACACGTGGTGCTCAACTCTGCATTATTAAAAGGCCCAAAGAGccaggccttaattttctcctctgtaatatgga-gagctgagcagaggaGCCCGCCTG----------CCATAGATTCAGAGATGCTATCTAACAAATGGCAGTCTTAACGGGATCTGAGATCCCTTACATTTTTCCCACCTGACAAGCCCAGAGGGCTCATTGTCTGTGGCTTTTCT-CCGGGCTGCTGCTATCCCCCAGGGCTGATTGATCTGTTTATTCTTAGCTTGAGGCCGGAGCTGGAAGGGAGGCAGTTTGTTTTGGGCACTGCTGAGAAAAACAGACTAATCACCTAAATAGCACCTGGGGGAGTGAGGTGGCTCTAGATAGAACAGAAAGAGGCAGGCGCTCTTT i mm10.chr1 C 0 I 7 s canFam3.chr7 36210556 736 + 80974532 aatgcctacatatgaataaaggtgaattttc--catggggcatttgacatacccagagtagcccaagaac-cccactgtcaccctcagggGAACAAGGCG------------------------------ATTGGCATGTCACCTGTGT-CTGGAGCGTCTCCTTTAAGAGCCGTGGT--CTGGGTTGTCCGGCAGTGGTGCAGGGGCTCCCGGAGGCCGGGTGATGGATG-CCCTCGTCAGGAGTGCATATTGGATCTGTTACGCGCCAGTGATATACGATTTCAACATTTCAGGGGTGATTTGGATTCTCTGTACTCCCTGACTGGAATTCTGCTGCCACGTTG----TTTTGTGGTTTACTGCTCAGCAAGAGGAGAATAAATCTAGAAACCTGCTTGAAAATGGATAGACTGTATTCAATTCCATATCATTAAAAGATCTTAAAGGctaggccttaattttcttatctgcagaaggaagaggttgcactaagtttccttct--------agctctggaaattctaaaattctaGCTAACAAATAGCAATAGTAAGGAGCCCTAATTGCCCTGATG-TTTTTCTGTCCAGCAGGTCCCAAGGGCTCATTCTCTG--GGCTT----CAGGGGGGGTG----------GGGCGGATAGATCTGTTTATTCTAAGCCTGAGGACGGAGCTACAAGAGAGGCCATTTGTTTGGGGCACTGCTGAGAAAAACATCCCAATCACCT-AATCTCACCTTAGGGAATAGAGTAAGTCCAAGGGACGGGGCGTAGGGCCTGTGCTGTGA i canFam3.chr7 C 0 C 0 a score=404512.000000 s hg38.chr1_KI270759v1_alt 11836 188 + 425601 TTTGGA-------------ATGAGGAGGC------------------AAACCTGGGAAGCTGCATGCCGCTGAATGATGATGAAAAGCACAAAGCTACTGAATGCCTCTGGCTTGGCCGCCAAAGAGAATTGGTTTCTGTAAGTGTC-GGAGAGGGAAGACCCGCATTCCAGAGCTGCACCCCTTTCTTCACATTTCCGGTCCCTCTCCCCCAGCTCCTG s panTro4.chr1 224751796 188 + 228333871 TTCGGA-------------ATGAGGAGGC------------------AAACCTGGGAAGCTGCATGCCGCTGAATGATGATGAAAAGCACAAAGCTACTGAATGCCTCTGGCTTGGCCGCCAAAGAGAATTGGTTTCTGTAAGTGTC-GGAGAGGGAAGACCCACATTCCAGAGCTGCACCCCTTTCTTCACATTTCCGGTCCCTCTCCCCCAGCTCCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226115466 189 - 229942017 TTTGGA-------------ATGAGGACGC------------------AAACCTGGGAAGCTGCATGCCACTGAATGATGATGAAAAGCACAAAGCTACTGAGTGCCTCTGGCTTGGCCGCCAAGGAGAATTGGTTTCTGTAAGTGTCGGGAGAGGGAAGACCCGCATTCCAGAGCTGCACCCCTCTCTTCACATTTCCGGTCCCTCTCCCCCAGCTCCTG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16724408 188 - 229590362 TTTGGA-------------ATGAGGAGGC------------------AGACCTGGGAAGCTGCATGCAGCCAAATGATGATGACAAACGTAAGGCTACTGAGTGCCTCTGGCTTGGCCACCAAAGAGAATTGGTTTCTGTAAGCCTC-AGAGAGCGAAAACCTGCATTCCAGAGCTGCAGCCCTCTCTGCACATTTCTGGTCACTCTGCCCCAGCTCCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223484653 188 - 227556264 TTTGGA-------------ATGAGGAGGC------------------AGACCTGGGAAGCTGCATGCAGCCAAATGATGATGACAAACGTAAGGCTACTGAGTGCCTCTGGCTTGACCACCAAAGAGAATTGGTTTCTGTAAGCCTC-AGAGAGGGAAAACCTGCATTCCAGAGCTGCAGCCCTCTCTGCACATTTCTGGTCACTCTGCCCCAGCTCCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16536613 188 - 220367699 TTTGGA-------------ATGAGGAGGC------------------AAACCTGGGAAGCTGCATGCAGCCGAATGATGATGACAAACATAAGGCTACTGAGTGCCTCTGGCTTGGCCACTGAAGAGAATTGGTTTCTGTAAGCGTC-AGAGAGGGAAAACCTGCATTCCAGAGCTGCAGCCCTCTCTGCACATTTCTGGTCACTCTGCCCCAGCTCCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82335350 188 + 85787240 TTTGGA-------------ATGAGGAGGC------------------AAACCTGGGAAGCTGCATGCAGCTGAATGATGATGACAAACATAAGGCTACTGAGTGCCTCTGGCTTGGCCACCGAAGAGAATTGGTTTCTGTAAGCGTC-AGAGAGGGAAAACCTGCATTCCAGAGCTGCACCCCTCTCTGCACATTTCTGGTCACTCTGCCCCAGCTCCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14000065 177 - 49578535 TTTGGA-------------AGGAGGAGGC------------------AGACCTGGGATGCTGTGTGCAGCTGAGCGATGACGA-------AAAGCGACTGGGTGCCTCTGGCTTGGCTGCCAGAGAGAACTGGTTTCCGTAACTGTC---AGAGGGAAAACCCGCATTCCCGAGGCGCGTCCC--TCTGTGAGTTTCTGGTCACTCTTCTCCAGCTCCTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178639237 151 + 195471971 TGTGGA-------------GGAAGGAGGAGCTGGAAGTGGTAGGGAGAAACCTGGAAAGGTG-GTACAGCC---------------------AGTAGCCAGATGCC---AGCCGGGCCAGCAAAGGAATTTGGTGTCTTCACTTGTC---CAGAGGAAGACCT-CAT--CATATCTGT-------TCTCCACAT------------------AGCTCCTG i mm10.chr1 I 7 I 49 s canFam3.chr7 36211292 158 + 80974532 TTTGGATGCTGGGAGAGGGGTGGGTGGCC------------------AGGCCAAGGAA---------AGCCTGGAGATGTAGAAAAGCAGAAGCTCCCTGAGTGCCTCCCGCTGAGCAGCCAGAAGGGTTTGGTTTCCTTAAATATC----------------------CAGGGC-------------GTGTGCTTCTGGTCACTTCCATCACTCCCCTG i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140007171 1625 - 143122389 M a score=168717.000000 s hg38.chr1_KI270759v1_alt 12024 75 + 425601 CACACCCTGATGCTGGACCAAGGG--------------GCCTGGGCAGAGGTGGGTGTGCTGGG-CGGGAAAGTACGTCATGGATGCCTC s panTro4.chr1 224751984 89 + 228333871 CACACCCTGATGCTGGACCAAGGGTGCTGGACCAAGGGGCCTGGGCAGAGGTGGGCGTGCTGGG-CGGGAAAGTACGTCATGGATGCCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226115655 75 - 229942017 CACACCCTGGTGCTGGACCAAGGG--------------GCCTGGGCAGAGGTGGGTGTGCTGGG-CGAGAGAGCACGTCATGGATGCCTC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16724596 75 - 229590362 CACAGCCTGGTGCTGGACCAAGGG--------------GCCTGGGCAGAGGTGGGTGTGCTGGG-CAGGAGAGGACGTCATGGATGGCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223484841 75 - 227556264 CACAGCCTGGTGCTGGACCAAGGG--------------GCCTGGGCAGAGGTGGGTGTGCTGGG-CAGGAGAGGACGTCATGGATGGCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16536801 75 - 220367699 CACAGCCTGGTGCTGGACCAAGGG--------------GCCTGGGCAGAGGTGGGTGTGCTGGG-CAGGAGAGGACGTCATGGATGGCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82335538 75 + 85787240 CACAGCCTGGTGCTGGACCAAGGG--------------GCCTGGGCGGAGGTGGGTGTGCTGGG-CAGGAGAGGACGTCATGGATGCCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14000242 73 - 49578535 CACGTGCTGGTGCTGGACTAAGGG--------------GCCTGCGCAGAGGCAGGTGTGTGATG-TGGGAGAGGACGT--GGGATGCCTC i calJac3.chr19 C 0 I 201 s canFam3.chr7 36211450 72 + 80974532 CAGA-CCTGGGGCTGCAGCCACAGCCT-----------GCTTGGGCA------GGTGTGCTGGGTCAGAAGAGCACAGCTCTGGCGCCTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178639388 49 + 195471971 I e nomLeu3.chr5 140007171 1625 - 143122389 M a score=-4162.000000 s hg38.chr1_KI270759v1_alt 12099 17 + 425601 AACTTGCCATGGATGGC s panTro4.chr1 224752073 17 + 228333871 AACTTGCCATGGATGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226115730 4 - 229942017 AGGT------------- i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16724671 4 - 229590362 AGGT------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223484916 4 - 227556264 AGGT------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16536876 4 - 220367699 AGGT------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82335613 4 + 85787240 AGGT------------- i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36211522 4 + 80974532 GGGA------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178639388 49 + 195471971 I e calJac3.chr19 14000315 201 - 49578535 I e nomLeu3.chr5 140007171 1625 - 143122389 M a score=208589.000000 s hg38.chr1_KI270759v1_alt 12116 93 + 425601 AGGTTGACTTCCTTCCCAGCAACTTGCAGA-TGTTCAGATGCGCAGAGTTAAGGTCTAAAACAAGAAAAGTTTGCTAAC---------------------GTAGAGTGGCCGCTG---------------------- s panTro4.chr1 224752090 93 + 228333871 AGGTTGACTTCCTTCCCAGCAACTTGCAGA-TGTTCAGATGCGCAGAGTTAAGGTCTAAAACAAGAAAAGTTTGCTAAC---------------------GTAGAGTGGCCGCTG---------------------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226115734 91 - 229942017 --GTTGACTTCTTTCCCAGCAACTTGCAGA-TGTTCAGATGCGCAGAGTTAAGGTCTAAAACAATAAAAGTTTGCTAAC---------------------GTAGAGTGGCCGCTG---------------------- i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16724675 91 - 229590362 --GTTGCCTTCCTTCCCAGCAACTTGCAGA-TTTTCAGATGCGCCGAGTTAAGGTCTAAAACAAGAAAAGTTTGCTAAC---------------------GTGGAGTGGCCGCTG---------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223484920 91 - 227556264 --GTTGCCTTCCTTCCCAGCAACTTGCAGA-TTTTCAGATGCGCCGAGTTAAGGTCTAAAACAAGAAAAGTTTGCTAAC---------------------GTGGAGTGGCCGCTG---------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16536880 88 - 220367699 --GTTGCCTTCCTTCCCAGCAACTTGCAGA-TTTTCAGATGCGCCGAGTTAAGGTCTAAAAC---AAAAGTTTGCTAAG---------------------GTGGAGTGGCCGCTG---------------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82335617 91 + 85787240 --GTTGCTTTCCTTCCCAGCAACTTGCAGA-TTTTCAGATGCGCAGAGTTAAGGTCTAAAACAAGAAAAGTTTGCTAAC---------------------ATGGAGTGGCCGCTG---------------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14000516 90 - 49578535 ACGTTCCCTTCCTTCCCAGCACCTTGCAGA-TTTTCAGAGGTGTGGAGTTAAGGTCTGAAAC---AAGCCTTTGGTGAA---------------------GTAGAGTGGCCGCGG---------------------- i calJac3.chr19 I 201 C 0 s canFam3.chr7 36211526 137 + 80974532 ATGTGACCTTCCTTGCTGGCAGCCGGAAGATTTTTCAGGCGAATAGAGTTAAGACCTAAGACAAGAAAATTTGGCTTAAggggccctgggtgactcagtggttgagtgtctgcctttggctcaggtcgtgattccag i canFam3.chr7 C 0 C 0 e mm10.chr1 178639388 49 + 195471971 I e nomLeu3.chr5 140007171 1625 - 143122389 M a score=23508.000000 s hg38.chr1_KI270759v1_alt 12209 6 + 425601 GGTCTT s panTro4.chr1 224752183 6 + 228333871 GGTCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226115825 6 - 229942017 GGTCTT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16724766 6 - 229590362 GGTCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223485011 6 - 227556264 GGTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16536968 6 - 220367699 GGTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82335708 6 + 85787240 GGTCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14000606 6 - 49578535 GGTTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178639437 6 + 195471971 GGTCTT i mm10.chr1 I 49 C 0 s canFam3.chr7 36211663 6 + 80974532 ggtcct i canFam3.chr7 C 0 I 149 e nomLeu3.chr5 140007171 1625 - 143122389 M a score=2913462.000000 s hg38.chr1_KI270759v1_alt 12215 1062 + 425601 ATC-TTTCCGTCTTCAATGGCCTTGAAAAATATGGGGCACGCATGGGGATTTCACACTCTTAA-CAAGCTAATGTCTC-TAACACTACAG-GTTACACTTCACCTGATTTCCAGGTTAGTGCAGCGCCTGACCTCTCTCCAGAGGCACCCTCGTTTAGAAGCATAGATGATGCAAAAACATGGTTTCTCTTCTCAGTTCAGATT-GCCTCTGTTGCAAGGACTGAGAACTCTGA-G--GAGATCTAGGAGATCCCTAAGTATATTAGGTTTTAATTCTGGGTCAAATCAGCAAATGTTTATTAAGTACACACAACAGACAGGGCACTGTAAGACAAAACAAATCAATCAGTCAACGTCAACTCTTGTCATTGCTTGGG---GGGTAAAGGCAATACAAGGAATGACTGGCAAATACAGGTGTGAATTCCACTTACCCTCAGCAAGACGAGGGAAGAAGAAGATTCTGGA--------AAGGGAGAATTCTGCCAGCACCAACCTGATCATCCTTCTGG--GCATGGCCAAATGCCTCCATTTTTCCTCTGA--GGGGCTTCTTTGCCCTGAGGAATATACAAGTTGATA-------GGGCTACTTGCCTTCTTGCTCATTAATATCTGCTTGGCTCCGGATCTGCA---GGT---AGAGCAGTGCTGGAATTATCCCAGAGC----TGTGTTGTGA---CCTCTGGATGCTAGCCTTTCCA-----AGCAGGGACTTTGCTGCGACTCCCTAAGTTCATA----------GG----GAAAGC----AGCAAGGATGAGTTCGGGAGACTCTGGCATATGCATCAGAGTTCCAGAGTGAAAGGTGGCTCTGAAAACTTTGCAAACTGTACATAACTCAATTCCCCAGGCTGCT-GTGTGTCCGTCATCCCTGAAATTTCATGAGGCCAGAGTAGGTCAACAGGGGCTAATGAGACAAGATCTAACTAAAC-AGAGTAAAGA-------GTTTCTCGGTCACAAGGGAAACTTTTACTATTTGAAATCAGCCTGAGCCAAGATTGATGAG--GAAAAAAAAAC-A------AAA---------------------ACCAAAATCTACTGCATTTTACTCCTATTTAGGAAGAAGTA-AACTTTTGTAAACA-GGAAGAACACAGGGATAT-T s panTro4.chr1 224752189 1063 + 228333871 ATC-TTTCCGTCTTCAATGGACTTGAAAAATATGGGGCACGCATGGGGATTTCACACTCTTAA-CAAGCTAATGTCTC-TAACACTGCAG-GTTACACTTCACCTGATTTCCAGGTTAGTGCAGCGCCTGACCTCCCTCCAGAGGCACCCTCGTTTAGAAGCATAGATGATGCAAAAACATGGTTTCTCTTCTCAGTTCAGATT-GCCTCTGTTGCAAGGACTAAGAACTCTGA-G--GAGATCTAGGAGATCCCTAAGTATATTAGGTTTTAATTCTGGGTCAAATCAGCAAATGTTTATTAAGTACACACAACAGACAGGGCACTGTAAGACAAAACAAATCAATCAGTCAACGTCAACTCTTGTCATTGCTTGGG---GGGTAAAGGCAATACAAGGAATGACTGGCAAATACAGGTGTGAATTCCACTTACCCTCAGCAAGACGAGGGAAGAAGAAGATTCTGGA--------AAGGGAGAATTCTGCCAGCACCAACCTGATCATCCTTCTGG--GCATGGCCAAATGCCTCCATTGTTCCTCTGA--GGGGCTTCTTTGCCCTGAGGAATATACAAGTTGATA-------GGGCTACTTGCCTTCTTGCTCATTAATATCTGCTTGGCTCCGGATCTGCA---GGT---AGAGCAGTGCTGGAATTATCCCAGAGC----TGTGTTGTGA---CCTCTGGATGCTAGCCTTTCCA-----AGCAGGGACTTTGCTGTGACTCCCTAAGTTCATA----------GG----GAAAGC----AGCAAGGATGAGTCCGGGAGACTCTGGCATACGCATCAGAGTTACAGGGTGAAAGGTGGCTCTGAAAACTTTGCAAACTGTGCATAACTCAATTCCCCAGGCTGCT-GTGTGTCCGTCATCCCTGAAATTTCATGAGGCCAGAGTAGGTCAACAGGGCCTAATGAGACAAGATCTAACTAAAC-AGAGTAAAGA-------GTTTCTCAGTCACAAGGGAAACTTTTACTATTTGAAATCAGCCTGAGCCAAGATTGATGAG--GAAAAAAAACCAA------AAA---------------------AACAAAATCTATTGCATTTTACTCCTATTTAGGAAGAAGTA-AACTTTTGTAAACA-GAAAGAACACAGGGATAT-T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226115831 1064 - 229942017 ATC-TTTCCGTCTTCAATGGCCGTGAAAAATATGGGGCACGCATGGGGCTTTCACACTCTTAA-CAAGCTAATGTCTC-TAACACTACAG-GTTACACTTCACCTGATTTCCAGGTTAGTGCAGCGCCTGACCTCTCTCCAGAGGTACCCTCGTTTAGAAGCATAGGTGAGGCGAAAACATGGTATCTCTTCTCAGTTCAGATT-GCTTCTGTTGCAAGGACTAAGAACTCTGA-G--AAGATCTAGGAGATCCCTAAGTATATTAGGTTTTAATTCTGGGTCAaatcagcaaatgtttattaagtacacacaacagacagggcactgtgAGACAAAACAAATCAATCAGTCAACATCAACTCTTGTCATTGCTTGAG---GGGTAAAGGCAATACAAGGAATGACTGGCAAATACAGGTGTGAATTCCATTTATCGTCAGCAAGACAACAGAAGAAGATGATTCTGGA--------AAGGGAGAATTCTGCCAGCATCAACCTGATCATCCTTCTGG--GCATGGCCAAACACCTCCATTATTCCTCTAA--GGGACTTCTTTGCCCTGAGGAGTATACAAGTTGATA-------GGGCTACTTGCCTTCTTGCTCATTAATATCTGCTTGGCTCCGGATCTGCA---GGT---ACAGCAGTGCTGGAATTATCCCAGAGC----TGTGTTGTGA---CCTCTGGATGCTAGCCTTTCCA-----AGCAGGGACTTTGCTGCAACTCCCTAAGTTCATA----------GG----CAAAGC----AGCAAGGATGAGTTCAGGAGACTCTGGCATACACATCAGAGTTCCAGGGTGAAAGGTGGCTCTGAAAACTTTGCAAACTGTACATAACTCAATTCCCCAGGCTGCT-GTGTGTCTGTCATCCCTGAAATTTCTTGAGGCCAGAGTAGGTCAACACAGGCTAATGAGACAAGATCTAACT-----AGAGTAAAGA-------GTTTCTCAATCACAAGGGAAACTTTTACTATTTGAGATCAGCCTGAGCCAAGATTGATGAG--Gaaaaataaataaataaataaa---------------------aCCAAAATCTATTGCATTTTACTCC-ATTTAGGAAGAAGTA-AACTTTTGTAAACA-GGAAGAACACAGGGATAT-T i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16724772 1083 - 229590362 ATC-TTTCTGTCTTCAGTGGCCCTGAAAAATATCGGGCACACGTGGGGATTTCACACTTTTAA-CAAGCTAATGTCTC-TAACACTACAG-GTTACACTTCGCCTGATTTCCAGGTCAGTGCAGCGCCTGACCTCTCTCCAGAGGCACCCTCATTTAGAAGCATAGATGATGCGAGAACATGGTTTCTCTTCTCGGTTCAGATT-GCCTGGGTTGCAAGGACTAAGAACTCTGA-G--GAGATCTAGGAGATCCCTAAGTATATTAGGTTTTAAGTC-AAGTCAATGCGGCAAATGTTTATTAAGTACACGCAACAGACAGAGCGCTGTGAGACAAGACAAATCAATTAGTCAATATCAACGCTTGTCATTGCTTGGG---GGGTAAAGGCAATACAAGGAATGACTGGCAAATACAGGTGTGAATTCCACTTACCCTCAGCAAGAAGAGG---GAAGAAGATTCTGGAAAGGGAGGAAGGGAGAATTCTGCCAGCACCAACCTGATCATCCTTCTTG--GCATGGCCAAACGCCTCCATTGTTCCTCTAA--GGGGCTTCTTTGCCCTGAGAAGTATACAAGTTGATA-------GGGCTACTTGCCTTCTTGCTCATTAATATCTGCTTGGCTCCTGATCTGCA---GAT---AGAGCAGTGCTGGAATTATCCCATC-C----AGTGTTGTGA---CCTCTGGATGCTAGCCTTTCCA-----AGCAGGGACTTTGCTGTGACTCCCTAAGTTCATA----------GG----GAAAGC----AGCAAGGATGAGTTTGGGAGACTCTGGCATGTGCATCAGAGTTCCAGGGTGAAAGGTGGCTCTGAAAACTTTGCAAACTGTACGTAACTCAATTCCCCAGGCTGCT-GTGTGTCTGTCATTCCTGAAATTTCATGAGGCCAGAGTAGGTCAACATGGGCTAATGAGACAAGATCTAACTAAAC-AGAGTGAAGA-------GTTTCTCAATAACAAGGGAAACTTTTACTGTTTGAGATCAGCCTGAGCCAAGATTGATGag--aaaaaaaaaaaaa------aaaaaacaacgaaaacaaacaaacaacaaaaTCTATTGCATTTTACTCC----TAGGAAGAAGTA-AACTTTTGTAAACA-GGAAGAACACAGGGATAT-T i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223485017 1085 - 227556264 ATC-TTTCTGTCTTCAGTGGCCCTGAAAAATATCGGGCACACGTGGGGATTTCACACTTTTAA-CAAGCTAATGTCTC-TAACACTACAG-GTTACACTTCGCCTGATTTCCAGGTCAGTGCAGCGCCTGACCTCTCTCCAGAGGCACCCTCATTTAGAAGCATAGATGATGCGAGAACATGGTTTCTCTTCTCGGTTCAGATT-GCCTCGGTTGCAAGGACTAAGAACTCTGA-G--GAGATCTAGGAGATCCCTAAGTATATTAGGTTTTAAGTC-AAGTCAATGCGGCAAATGTTTATTAAGTACACGCAACAGACAGAGCGCTGTGAGACAAGACAAATCAATTAGTCAACATCAACGCTTGTCATTGCTTGGG---GGGTAAAGGCAATACAAGGAATGACTGGCAAATACAGGTGTGAATTCCACTTACCCTCAGCAAGAAGAGG---GAAGAAGATTCTGGAAAGGGAGGAAGGGAGAATTCTGCCAGCACCAACCTGATCATCCTTCTTG--GCATGGCCAAACGCCTCCATTGTTCCTCTAA--GGGGCTTCTTTGCCCTGAGAAGTATACAAGTTGATA-------GGGCTACTTGCCTTCTTGCTCATTAATATCTGCTTGGCTCCTGATCTGCA---GAT---AGAGCAGTGCTGGAATTATCCCATC-C----AGTGTTGTGA---CCTCTGGATGCTAGCCTTTCCA-----AGCAGGGACTTTGCTGTGACTCCCTAAGTTCATA----------GG----GAAAGC----AGCAAGGATGAGTTTGGGAGACTCTGGCATGTGCATCAGAGTTCCAGGGTGAAAGGTGGCTCTGAAAACTTTGCAAACTGTACATAACTCAATTCCCCAGGCTGCT-GTGTGTCTGTCATCCCTGAAATTTCATGAGGCCAGAGTAGGTCAACATGGGCTAATGAGACAAGATCTAACTAAAC-AGAGTGAAGA-------GTTTCTCAATAACAAGGGAAACTTTTACTGTTTGAGATCAGCCTGAGCCAAGATTGATGAGaaaaaaaaaaaaaaa------aaaaaacaacgaaaacaaacaaacaacaaaaTCTATTGCATTTTACTCC----TAGGAAGAAGTA-AACTTTTGTAAACA-GGAAGAACACAGGGATAT-T i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16536974 1074 - 220367699 ATC-TTTCCGTCTTCCGTGGCCCTGAAAAATATCGGGCACGCGTGGGGATTTCACACTTTTAA-CAAGCTAATGTCTC-TAACACTACAG-GTTACACTTCGCCTGATTTCCAGGTCAGTGCAGCGCCTGACCGCTCTCCAGAGGCACCCTCATTTAGAAGCATAGATGATGCGAGAACATGGTTTCTCTTCTCGGTTCAGATT-GCCTCGGTTGCAAGGACTAAGAACTCTGA-G--GAGATCTAGGCAATCCCTAAGTATATTAGGTTTTAAGTC-GGGTCAAATCggcaaatgtttattaagtataCACAACAGACAGAGCGCTGTAAGACAAGACAAATCAGTTAGTCAACATCAGCGCTTGTCATTGCTTGGG---GGGTAAAGACAATACAAGGAATGACTGGCAAATACAGGTGTGAATTCCACTTACCCTCAGcaagaggagggaagaagaagatTCTGGA--------AAGGGACAATTCTGCCAGCACCAACCTGATCATCCTTCTGG--GTATGGCCAAATGCCTCCATTGTTCCTCTAA--GGGGCTTCTTTGCCCTGAGAAGTATACAAGTTGATA-------GGGCTACTTGCCTTCTTGCTCATTAATATCTGCTTGGCTCCTGATCTGCA---GAT---AGAGCAGTGCTGGAATTATCCCATC-C----AGTGTTGTGA---CCTCTGGATGCTAGCCTTTCCA-----AGCAGGGACTTTGCTGCGACTCCCTAAGTTCATA----------GG----GAGAGC----AGCAAGGATGAGTTTGGGAGACTCTGGCATGTGCATCAGAGTTCCAGGGTGAAAGGTGGCTCTGAAAACTTTGCAAACTGTACATAACTTAGTTCCCCAGGCTGCT-GTGTGTCTGTCATCCCTGAAATTTCATGAGGCCAGAGTAGGTCAACATGGGCTAATGAGACAAGATCTAACTAAAC-AGAGTGAAGA-------GTTTCTCAATAACAAGGGAAACTTTTactgtttgagatcagcctgagccaagattgatgag--gaaaaaaaaaaaa------aaa----aacgaaaacaaacaaacaacaaaatctaTTGCATTTTACTCC----TAGGAAGAAGTA-AACTTTTGTAAACA-GGAAGAACACAGGGATAT-T i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82335714 1055 + 85787240 ATC-TTTCCGTCTTCAGTGGCCCTGAAAAATATCGGGCACGCGTGGGGATTTCACACTTTTAA-CAAGCTAATGTCTC-TAACACTACAG-GTTACACTTCGCCTGATTTC----------CAGTGCCTGACCTCTCTCCAGAGGCACCCTCATTTAGAAGCATAGATGATGCGAGAACATGGTTTCTCTTCTCGGTTCAGATT-GCCTCGGTTGCAAGGACTAAGAACTCTGA-G--GAGATCTAGGAGATCCCTAAGTATATTAGGTTTTAAGTC-AGGTCAAATCGGCAAATG----TTAAGTACACACAACAGATAGAGCGCTGTAAGACAAGACAAATCAATTAGTCAACATCAACTCTTGTCATTGCTTGGG---GGGTAAAGGCAATACAAGGAATGGCTGGCAAATACAGGTGTGAATTCCACTTACCCTCAGCAAGAGGAGGGAAGAAGAAGATTCTGGA--------AAGGGAGAATTCTGCCAGCACCAACCTGATCATCCTTCTGG--GTATGGCCAAATGCCTCCATTGTTCCTCTAA--AGGGTTTCTTTGACCTGAGAAGCATACAAGTTGATA-------GGGCTACTTGCCTTCTTGCTCATTAATATCTGCTTGGCTCCTGATCTGCA---GAA---AGAGCAGTGCTGGAATTATCCCATC-C----AGTGTTGTGA---CCTCTGGATTCTAGCCTTTCCA-----AGCAGGGACTTTGCTGCGACTCCCTAAGTTCATA----------GG----GAAAGC----AGCAAGGATGAGTTTGGGAGACTCTGGCACGTGCATCAGAGTTCCAGGGTGAAAGGTGGCTCTGAGAACTTTGCAAACTGTACGTAACTCAATTCCCCAGGCTGCT-GTGTGTCTGTCATCCCTGAAATTTCATGAGGCCAGAGTAGGTCAACATGGGCTAATGAGACAAGATCTAACTAAAC-AGAGTGAAGA-------GTTTTTCAATAGCAAGGGAAACTTTTACTGTTTGAGATCAGCCTGAGCCAAGATTGATGAG--Gaagaaaaaaaaa------aaa---------aagaaaacaaacaacaaaaTCTATTGCATTTTACTCC----TAGGAAGAAGTA-AACTTTTGTAAACA-GAAAGAACACAGGGATAT-T i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14000612 1039 - 49578535 ATCTTTTCTGTCTTCAATGGCCCTGAAAAATACGGGGCACACATGGGGTTTTAGCACTTTTAAGCAAGCCAGTGTCTC-TAAGACTACAG-GTTACACTTCACCTGGTTTCCGGGTTAGTACAGCGCCTGACCTGTCTCCAGAGGCACCCTCATTTAGAAGCATAGAGGAGACGAAAACCTGGTTTCTCTTCTCAGTTCAGATT-GGCTCTGAGGCAAGGACTAAGAACTCTGA-G--AAGATCGAGGAGAT-----AGTATAGTAGGTTTTAAGTCTCAGTCAGATCAGCAAATATTTATCAAGTACACAAAAC---------------AGACAAAATACATCAATACACCAACATCAACACTTGCCGTTACTTGGGGCTGGGTAAAGTCAATACAATGAATGACTGGCAAATACAGGTGCGAATTCCACTTAGCCTCAGCAAGAGCGGGGAAGAGGAAGATTCTGGA--------AAGGGAAAATTCTGCCAGCACCCACCTGATCATCCTC---A--GCAGGGTCAGATGCCTCCATTCTTCTTCCAA--GGGGCTGCTTTACCCTGAGAAGTAAGCACGTTGATA-------GAGCGCCTTGCCTTCCTGCTCATTAGTGTCTGCTTGGCTCCTGATCTGCA---GGT---ACAACAGTGCTGGGATTATCACTGT------------GTGA---CTCCTGGGT----GCCTTTCCA-----AGCAGGGACTTGGCTGCAACTCCCTAAGTTCACA----------GG----AAAAGC----CGCAAGGATGAGTTTGGGAGACGCTGGCACACACATCAGAGTTCCAGGGTGAAACGCGGCTCTGAAAACTTTGTAAACTGTGCATAACTTAATTCCCCAGGCTGCT-GTGTGTCTGTCATCCCTG-ATTTTCATGGGGCCAGAGTAGGTCAACACGGGCTAATGAGACAAAATCTAACTAAAC-AGAGTAAAGG-------GTTTCTCAATAACAAGGGAAACTCTTACTCTTTGAGATCAGCCTGAGCCAAGATGGATGAG--GAAAAAAAAAAAA------AAA----------CTGACACCAGTAACAAAATCTGTTGCGTTTTGCTCC----TAGGAAGCAGTA-AACTTTCGTGAACA-GGAAGAACACAGGGATAT-T i calJac3.chr19 C 0 C 0 s mm10.chr1 178639443 976 + 195471971 AGC-TT----TCTTGAGTTACC---------------------------TCTGAAACTTCTAA----GCAAGTGTCTC-TCCCATTGTAGAGTCACACTCCGCTTGCTTTCCAGGTCGGGCCTGCATCAGACCTGTCTCTAGAGGTATCTTTACTTACAAATGCAG-TGGGACAAATTCTTTGTTTC---TGCCAGCTCAGATTGGTCTCTGTCTCCAGGATTAAGAACTCAGGCG--CAGGTCTGAGAGATCCCTGGGTAT--TAAGATTTAACTCTGGGCCAGATCAGCAAATATTTATTGAGTACACACAAAAGACAGGAC-------------ACAAATCA-TTAATCAACGCCCGCTCTTGTCATTGGCTGGG---GG--AAAGGCAATATAATGAATGGCTGGCAAATACAGGTGTGAATTCCACTTAGCCTCCCCAAGGCAGGGGA-CAGAAAAATTCTGGA--------ATGGTAGAGTCCAGTCGATACTAATGGGATTATCCTTCAGGGAGCTTGACCAACCAACTCAA--GGTATTTCCA--GTGATTCTTCACCTCCAAGCAGTGAAGAGTCTGGCAGAGTTCTGAGCCCCCCCCCTTTTTTTTCCTCCATAAC-------------ATCTGCAGGTGGT---AGACCAGGGCTGCAGTTATCCCAGAGC----TGAGGGATGAGATTTTCCAGCTCTGGTCCTGTGTGGAGGCAGCAGGGAGGTTCCTGCAACTCCTCAGGGTCATAAGGCCAAGTCGG----AAAAGC----AGCAA-GATGAGCTCGGGAGTCTCTGGCATATGCATTAGCGTCCCAGGGTAAA-------------AACTGTGTAAACGGTACATGACTTAATTCCTCTGCCTGTT-GGGTGTCTGTCATCCTTGAGATTTCCCGGGGCCAGAAGAGGTCAACACGAGCTAGTGTGACAACACCTAGCTAAGCAAGGGAAAAGA-------ATTTCTCAGTGATGAGGG-------------------TCAGCCTGAACCAAGGCTGACCAG--AAAAACAAGAGGA-----------------------------------------TTCAGTTTTACCCC----AAGAAGGAGGGAGAAGCTTTGTAAGCG-GAAAGAAAAGAGGACTGTCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36211818 1035 + 80974532 GTT-TTCCCATCCTCAATGGCCCTGAAAAATATGGGGCACATGTGGGAATTTAACACTTTTAAGCGAGCTCGTGTCTCTTAAGATTGCAG-GTTGCACTTCGCCTCATTTCGGGGTTAGGACAGCGCCAGACCTCTCTCCAGAGGCAGACTCCTCCAGAAGCACAAATGAGGCAAATCTGTTATTCCTTCTCTTAGTTCATGTG-GCCCCTGTTATGAGGGCTACAAACTCTGA-GAAGAGAGCTAGAAGATCTCGAAGCACATTAGGATTTAACTCTGGGTCAAACCAGC-ACTGTTTATTCAGTACACAAGAAAGGCAGGGCACTCT-AGACAAAA--------TCAATCAGTACGAATACTTCTCACTGTTTCGG---GGGAAAAGGCAATAC-ATGAATGGCTGACAAATACAGGTGTGAATTCCACTTAGTCTCTGCAAGATGGAG---AGGGAAGCTTCTGGA--------AAG--AGAATTCT---AGCATCCATCCAAGTATCCCTCAGGG-GCTTGGCTA----TCTCCGTTGCTTCTGCAAGGGGGGTCTCTTCACCCTAGGAAGTGCACACCCC-ATA-------GAATGACTGAC--------TCACCGGCATATGCTGGATTCCAGAGCTGTG---GGTAACAGACCAGTGCTGGAATTGTCCTGGAGCTGAGAGTATTGTCA---TGTTTAGATGTTGACCTTTCAC-----AATGGGGTCTCTGCTGTGACTTCTAAAGGTTATA----------GGGCCAGAGAGCAATGAGCATGAATGAGTTTGGGAGCCTCGGATATACTGCCAAGAGTTTCAGGGTGAAAGGTGGCTCTGGAAACTCCATAAACTGTGCATAGCTTAGTTCTTTTGCCTGCTGGTATGTCCGTCATTCTTGAGATATAAC-CTGCCAGGTTAGGTCGACATGGGCCAGTGAGACGAGATCCAACAAAAC-AGAGTAAAGAGAATAGGGTTTCTCAATAACAAGGACAAC--TTACTACTTGAGATTAGGCAAAACCAAGACTGACCAG--GAAAAA------A------AAA--------------------------------TTGCGTTTTATTCC----TAGAAAGAA----CACCTTTGTAAAAATGGAAAAATATAGGGATAT-T i canFam3.chr7 I 149 I 375 e nomLeu3.chr5 140007171 1625 - 143122389 M a score=83488.000000 s hg38.chr1_KI270759v1_alt 13277 36 + 425601 TGCTCTT-AGCTAGAATGGGGCAAATTGGCAACAGTT s panTro4.chr1 224753252 32 + 228333871 TGCTCT-----TAGAATGGGGCAAATTGGCAATAGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226116895 36 - 229942017 TGCTCTT-AGCTAGAATGGGGCAAATTGGCAATAGTT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16725855 36 - 229590362 TGCTTTT-AGCTAGAATGGGGCAAATTGGCAATATTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223486102 36 - 227556264 TGCTTTT-AGCTAGAATGGGGCAAATTGGCAATATTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16538048 36 - 220367699 TGCTCTT-AGCTAGAATGGGGCAAATTGGCAATATTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82336769 36 + 85787240 TGCTCTT-AGCTAGAATGGGGCAAATTGGCAATATTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14001651 35 - 49578535 TGCTCTT-AGCTGGAATGGGGCGAATCGGCAATA-TT i calJac3.chr19 C 0 C 0 s mm10.chr1 178640419 36 + 195471971 TGGCCAT-GGCTCTCTTGGGACTATGTAGGAACTGTT i mm10.chr1 C 0 I 536 s canFam3.chr7 36213228 33 + 80974532 TGCTCCTCAGCCTGGATGGGGCAGACTGGCAAT---- i canFam3.chr7 I 375 C 0 e nomLeu3.chr5 140007171 1625 - 143122389 M a score=26810.000000 s hg38.chr1_KI270759v1_alt 13313 15 + 425601 TTGGGTGCCTACGGC s panTro4.chr1 224753284 15 + 228333871 TTGGGTGCCTATGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226116931 15 - 229942017 TTGGGTGTCTACCGC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16725891 15 - 229590362 TTGGGTGCCTACGGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223486138 15 - 227556264 TTGGGTGCCTACGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16538084 15 - 220367699 TTGGGTGCCTACGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82336805 14 + 85787240 TTGGGTG-CTACGGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14001686 15 - 49578535 TTGGGTGTCCAGGGC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36213261 3 + 80974532 ---GGT--------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178640455 536 + 195471971 I e nomLeu3.chr5 140007171 1625 - 143122389 M a score=1765728.000000 s hg38.chr1_KI270759v1_alt 13328 627 + 425601 TTTGGGTTTGATGGAGTCAACCTGCCACTAAGGAAATAGACCCAAGGAGGTTAAACTCAGTAGAGAGCTATGGGTATTCCTTTCCTTTAAGT----------------------------TACAGCTCCCAG-------------GAAAGCAAAACACAAGCTGAACAAACATTATACAAGCCATGTATATGTGTAGCATGTGTCCAGATCCAATTCACTTATTTGCTCACGCTTCTAGGAACTC-CA-TCCTTGTGCTTTTATCTCCTGGG-CTCTCTGACTTTGAGACTTTTCACAGCTGTCATCATTTAGCATAAATAACAGCCTGCGGAAGA--GTGGGTGACAATGTGGCATTTTGCTGGGC--CACTTCTTGCTCAGCATTTGTCGTGGAGTCTTCTGCCATTGGCCATGTGCCAGGCCTGACAAACAGCCATCAACACAACTTGTCACCAAGTGA------TTTT----G---AAAACTTATTGTTGAGGTGACTTCATTCTTACATCTTTCGTGCTTGGCAAAGTAATTACTACGCCAA----------------GT---------TTTTT------------------------------------------------------------------------TTTTTTTTAATCAAAATAAAACACTGATTAAATGTTTTCCTGTATCTGGATTA--CAAACTATTCCGTGATCTCCAAACTTTGTCCTCTCGTGTGTGTGTGCATCTCACACAATCTCT----GTCCTTCTTGGAAAAATG s panTro4.chr1 224753299 625 + 228333871 TTTGGGTTTGATGGAGTCACCCTGCCACTAAGGAAATAGACCCAAGGAGGTTAAACTCAGTAGAGAGCTATGGGTATTCCTTTCCTTTAAGT----------------------------TACAGCTCCCAG-------------GAAAGCAAAACACAAGCTGAACAAACATTATACAAGCCATGTATATGTGTAGAATGTGTCCAGATCCAATTCACTTATTTGCTCACGCTTCTAGGAACTC-CA-TCCTTGTGCTTTTATCTCCCGGG-CTCTCTGACTTTGAGACTTTTCACAGCTGTCATCATTTAGCATAAATAACAGCCTGCGGAAGA--GTGGGTGACAATGTGGCATTTTGCTGGGC--CACTTCTTGCTCAGCATTTGTCATGGAGTCTTCTGCCATTGGCCATGTGCCAGGCCTGACAAACAGCCATCAACACAACTTGTCACCAAGTGA------TTTT----G---AAAACTTATTGTTGAGGTGACTTCATTCTTACATCTTTCGTGCTTGGCAAAGTAATTACTACGCTAA----------------G-----------TTTT------------------------------------------------------------------------TTTTTTTTAATCAAAATAAAACACTGATTAAATGTTTTCCTATATCTGGATTA--CAAAGTATTCCGTGATCTCCAAACTTTGTCCTCTCGTGTGTGTGTGCATCTCACACAATCTCT----GTCCTTCTTGGAAAAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226116946 636 - 229942017 TTTGGGTTTGATGGAGTCACCCTGCCACTAAGGAAATAGACCCAAGGAGGTTAAACTCGGTAGAGAGCCATGGGTATTCCTGTCCTTTAAGT----------------------------TATAGCTCCCAG-------------GAAAGCAAAACACAAGCTGAACAAACATTATACAAGCCATGTATATGTGTAGAATGTGTCCAGATCCAATTCACTGATTTACTCACACTTCTAGGAACTC-CA-TCCTTCTGCTTTCATCTCCCAGG-CTCTCCGACTTTGAGACTTTTCACAGCTGTCATCATTTAGCATAAATAACAGCCTGTGGAAGA--GTGGGTGACAATGTGGCATTTTGCTGGGC--CACTTCTTGTTCAGCATTTGTCATGGAGTCTTCTGCCATTGGCCATGTGCCAGGCCTGACAAACAGCCATCAACACAACTTGTCACCAAGTGA------TTCT----G---AAAAATTATTGTTGAGGTGACTTCATTCTTACATCTTTCGTGCTTGGCAAAGTAATTACTACGCTGT----------------GTGTGTGTGTGTGTTT------------------------------------------------------------------------TTTTTTTTAATCAAAATAAAACACTGATTACATGTTTTCCTATATCTGGATTA--CAAACTATTCCGTGATCTCCAAACTTTGTCCTCTCGTGTGTGTGTGCATCTCACACAATCTCT----GTCCTTCTTGGAAAAATG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16725906 642 - 229590362 TTTGGGTTTGATGGAGTCACCCTGCCACTAAGGAAATAGACCCAAGGAGGTTGAACCCAGTAGAGAGCCATGGGTATTCTTTTCCTTTAAGT----------------------------TACAGCTCCCAG-------------GAAAGCAAAACACAAGCTGAACAAACATTATTCAAGCCATGTGTATGTGTAGAATGTGTCCAGATCCAATTCACTTATTTGCTCACGCTTCTAGGAACTCTCA-TCCTTGTGCTTTCATCTCCTGGG-CTCTCTGACTTTGAGACTTTTCACAGCTGTCATCATTTAGCATAAATAACAGCCTGCCGAAGA--GTGGGTGACAATGTGGCATTTTGCTGGGC--CACTTCCCGCTCAGCATTTGTCTTGGAGTCTTCTGCCATTGGCCATGTGCCAGGCCTGACAAACAGCCATCAACACAACTTGTCACCAAGTGA------TTGT----G---AAAAATTATTGTTGAGGTGACTTCATTCTTACGTCTTTCGTGCTTGGCAAAGTAATTACTACACTAA----------------gtgtgtgtgtatgtgtgtgtg-------------------------------------------------------------------tgtgtTTAAATCAAAATAAAACACTGATTAAATGTGTTCCTATATCTGGATTA--CAAACTATTCCGTGACCTCCAAGCTTTGTCCTCTCATGTGTGTGTGCATCTCACACAATCTCT----GTCCTTCCTAGAAAAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223486153 643 - 227556264 TTTGGGTTTGATGGAGTCACCCTGCCACTAAGGAAATAGACCCAAGGAGGTTGAACCCAGTAGAGAGCCATGGGTATTCTTTTCCTTTAAGT----------------------------TACAGCTCCCAG-------------GAAAGCAAAACACAAGCTGAACAAACATTATTCAAGCCATGTGTATGTGTAGAATGTGTCCAGATCCAATTCACTTATTTGCTCACGCTTCTAGGAACTC-CA-TCCTTGTGCTTTCATCTCCTGGG-CTCTCTGACTTTGAGACTTTTCACAGCTGTCATCATTTAGCATAAATAACAGCCTGCCGAAGA--GTGGGTGACAATGTGGCATTTTGCTGGGC--CACTTCCCGCTCAGCATTTGTCTTGGAGTCTTCTGCCGTTGGCCATGTGCCAGGCCTGACAAACAGCCATCAACACAACTTGTCACCAAGTGA------TTGT----G---AAAAATTATTGTTGAGGTGACTTCATTCTTACGTCTTTCGTGCTTGGCAAAGTAATTACTACACTAA--------------gtgtgtgtgtgtgtgtgtgtgtg-------------------------------------------------------------------tgtgtTTAAATCAAAATAAAACACTGATTAAATGTGTTCCTATATCTGGATTA--CAAACTATTCCGTGACCTCCAAGCTTTGTCCTCTCATGTGTGTGTGCATCTCACACAATCTCT----GTCCTTCCTAGAAAAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16538099 641 - 220367699 TTTGGGTTTGATGGAGTCACCCTGCCACTAAGGAAATAGACCCAAGGAGGTTGAACCCAGTAGAGAGCCATGGgtattcttttcctttaagt----------------------------TACAGCTCCCAG-------------GAAAGCAAAACACAAGCTGAACAAACATTATACAAGCCATGTGTATGTGTAGAATGTGTCCAGATCCAATTCACTTATTTGCTCACGCTTCTAGGGACTC-CA-TCCTTGTGCTTTCATCTCCTGGG-CTCTCTGACTTTGAGACTTTTCACAGCTGTCATCATTTAGCATAAATAACAGCCTGCCCAAGA--GTGGGTGACAATGTGGCATTTTGCTGGGC--CACTTCCCGCTCAGCATTTGTCTTGGAGTCTTCTGCCATTGGCCATGTGCCAGGCCTGACAAACAGCCATCAACACAACTTGTCACCAAGTGA------TTGT----G---AAAAATTATTGTTGAGGTGACTTCATTCTTACGTCTTTCGTGCTTGGCAAAGTAATTACTAcactaa----------------gtgtgtgtgtgtgtgtgtgta-------------------------------------------------------------------tgtgtttaaatcaaaataaaacactgaTTAAATGTGTTCCTATATCTGGATTA--CAAACTATTCCGTGACCTCCAAGCTTTGTCCTctcatgtgtgtgtgcatctcaCACAATCTCT----GTCCTTCCTAGAAAAATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82336819 651 + 85787240 TTTGGGTTTGACGGAGTCA-CCTGCCACTAAGGAAATAGACCCAAGGAGGTTGAACCCAGTAGAGAGCCATGGGTATTCTTTTCCTTTAAGT----------------------------TACAGCTCCCAG-------------GAAAGCAAAACACAAGCTGAACAAACATTGTACAAGCCATGTGTATGTGTAGAATGTGTCCAGATCCAATTCACTTATTTGCTCACGCTTCTAGGAACTC-CA-TCCTTGTGCTTTCGTCTCCTGGG-CTCTCTGACTTTGAGACTTTTCACAGCTGTCATCATTTAGCATAAATAACAGCCTGCCGAAGA--GTGGGTGACAATGTGGCATTTGGCTGGGC--CACTTCCCGCTCAGCATTTGTCTTGGAGTCTTCTGCCATTGGCCATGTGCCAGGCCTGACAAACAGCCATCAACACGACTTGTCACCAAGTGA------TTGT----G---AAAAATTATTGTTGAGGTGACTTCATTCTTACGTCTTTTGT-CTTGGCAAAGTAATTACTACACTAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-------------------------------------------------------------------tgtgtTTAAATCAAAATAAAACACTGATTAAATGTGTTCCTATATCTGGATTA--CAAACTATTCCGTGACCTCCAAGCTTTGTCCTCTCGTGTGTGTGTGCATCTCACACAATCTCT----GTCCTTCCTGGAAA---- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14001701 578 - 49578535 TTGGGGTTTGCGGTGGTCACCCTGCCACTGAGGAAATAGGCCCAGGGAGGTTGAACACCGC--AGAGCCAT-GCTATTCTTTCCCTTTAAGT----------------------------TACGACTCCCAG-------------GAAAGCAAAACACGAGCTGAACAAACATGATACAAGCCACGTG-------------------GATCCAATTCACTTACTTGTTCATGCTCCTGGGACCCC-CG-TCCTTGTGCCTTCACCTCCTGGG-CTCTCTGACTTTGAGACTTTTCACAGCTGTCACCATTTAGCATAAATAACAGCCCGCCGAAGA--GTGGGTGACAATGTGGCATTTTGCGGGGC--CACTTCCTGCTCAGCATTCATCATGGAGTCTCCTGCCACTGGCCATGTGCCAGGCCTGAC--ACAACCATCAACACGACTTGTCACTGAGTGA------TTTC----G---AGAAATTATTGTTGAGGTGACTTCATTCTTACATCTTTCATGCTTGGCGAAG----TACTATGCTAA----------------GTGGCT----------------------------------------------------------------------------------TTTTTAAAAATCAAAATGAAACACTGATTAAATGTTTTT------------------AACCATTCCGTGATCTCCAGGCTTTGTC----CACGTGTGTGCGCGTCTTGTACCATCTCT----GTCCTTCTTGGAAAAATG i calJac3.chr19 C 0 C 0 s mm10.chr1 178640991 707 + 195471971 TTTGTGACTGAAAAAACTGCTCTCCTACCAAGGAGGTGGACTCAGGGCTG--AAGCGCAGT--ACAGCCATGAGCATT--TCCCCTTGGAATCTAATCCAGCCAGGTCATCATGACCCCCTGCATCATCAAC-------------AGAAGTGGAACACTGGC----CAAACATCACCAAAGC----------TTTAGAATA----------ACATCCACTTACTT--CCAGGCCTCCCGAGACCC-GATTCCTCGTTCATTCATCTACTGGA-CTTTCCAACTTCCAGACTTTCCACAGCTGTCACCGTTTAGCATGAGTAACAGCCTGCAGAAGAGTGTGGGTGACAGTACGGCATGCTGCCGGGC--GACATCTTGCTCAGCATTGCTTATGCAATCTCCTGCCACTGGCCATGTGCCAGGCCTGACAAATAGCCATGAAGGTGACTTGTCACAAAGTAAATATTTTTGT----GTAAAAAGATCACTGTTGAGTTTACTCCATTATTACATATTCTATGCTTGGCAAAATAATTATTACAGTAA----------------ATGTTTCTGCTTCTGCTTTTGCTtcttcctccttcttctcctcctcttcctcttccttttcctcctcctccttctcctcctcttcctcttcttcATACTCAAAAGAAAATCTTGGTGGAATATTTTCCTGTCCCTGGATTATTCGGAGTATCCAGTGCTGTCTGAGTTCTGTCT-----------CATGCATCTCCCAGCATCTCT----ATCTTTCTTGGGAAAATG i mm10.chr1 I 536 C 0 s canFam3.chr7 36213264 628 + 80974532 TTTGAGTTTGATGTGGTCCCTCTCCC------------GATCTAGGGAGATCAGTTCCAT---ATAGCCATGGGCAGTCCTTTCCTTTCCAT----------------------------TACAACTCCCAGGGTGCAGACAGCAGAACACAAGACACAAGCTGAACAGATGTCACACAGCTC-------TGTGATAACCATGTCCAGATCTGATTCACTTACCGATTCAGACTTCGGGGACCTT----TCCGTCCTCCTTTGTCCACTGGGACTTTCTGACTTTGGGACTTTTTATAGCTGTCATCATTTAGTATAAATAACAGCCTGCCGCAGA--ATGGGTGACAGTGTAGCATTTC-CTGGGCCTCATATCTTGCTCAGTGTTCCCCACGAAGGCTCCTGCTACTGGCCGCGTGCCCAGCCTGACAAACAGCCATGAAAACGATTTGGCACAAGGTGA------TTTTTAAAA---AAAAATCATTGTGGAGGTTACTTCATTACTACATCTTTCATGCTTGGCAAAGTACTTACTATGCTGG----------------ATGCATTT---TTTAT------------------------------------------------------------------------TTTTTTTAAATCAAAA-GAAACATTGGTAAAATGATTTCCTGTACCTGGATTA--CAGAATATTCAGTGATCTCTGAGCTTTGTCTTT---TGTATGTGTGTATCTCATGCAATCTCTTAAAATCCTTCCTTAAAAAATG i canFam3.chr7 C 0 I 227 e nomLeu3.chr5 140007171 1625 - 143122389 M a score=73668.000000 s hg38.chr1_KI270759v1_alt 13955 33 + 425601 TCTCCATTAATTACTGGGGATGAAAGTTGATTA s panTro4.chr1 224753924 33 + 228333871 TCTCCATTAATTACTGGGGATGAACCTTGATTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226117582 33 - 229942017 TCTCCATTAATTACTGGGGATGAACCTTGATTA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16726548 33 - 229590362 TCTCCATTAATTACTGGGGATAAATCTTGATTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223486796 33 - 227556264 TCTCCATTAATTACTGGGGATAAATCTTGATTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16538740 33 - 220367699 TCTCCATTAATTACTGGGGATAAACCTTGATTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82337470 14 + 85787240 -------------------ATAAACTTTGATTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14002279 33 - 49578535 TCTCCATTAATTACTAGAGAAGAAGCTTGATGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178641698 26 + 195471971 TATC-------TACAAGGAGTGAACCTTACTGA i mm10.chr1 C 0 C 0 s canFam3.chr7 36214119 33 + 80974532 TATCCACAAATTACTGGGGATGCACCCTGATTA i canFam3.chr7 I 227 C 0 e nomLeu3.chr5 140007171 1625 - 143122389 M a score=864466.000000 s hg38.chr1_KI270759v1_alt 13988 275 + 425601 AAATTGTAGGTCATTTCCCAGGGAGGT-----TTTATGTGAATAACTTTA-GTACTGTGATGCACTACTTATGAAATCTCTGGTCTCTTTCTAAAATCAGGTTGGAGAAGAAGAGACTGTGCATGACAGTGCAGCCATGTGGCTTGGAGACTATGTGA--GTGGAAGCATTTTGAGGATACGATTTCTGAG--------------------------TCCATGCTATTTCTCTGTTGTAGCTTAGCTGTGGATTCCTTACGTGCGAATGATTTGGGAGTATA---------AGAACACAGACTCAGTGTCATCATTTT s panTro4.chr1 224753957 275 + 228333871 AAATTGTAGGTCATTTCCCAGGGAGGT-----TTTCTGTGAATAACTTTA-GTACTGTGATGCACTACTTATGAAGTCTCTGGTCTCTTTCTAAAATCAGGTTGGAGAAGAAGAGACTGTGCATGACAGTGCAGCCCTGTGGCTTGGAGACTATGTGA--GTGGAAGCATTTTGAGGATACGATTTCTGAG--------------------------TCCATGCTATTTCTCTGTTGTAGCTTAGCTGTGGATTCCTTATGTGTGAATGATTTGGGAGTATA---------AGAACACAGACTCAGTGTCATCATTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226117615 275 - 229942017 AAATTGTAGGTCATTTCCCAGGGAGGT-----TTTCTGTGAATAACTTTA-GTACTGTGATGCACTACTTATGAAGTCTCTGGTCTGTTTCTAAAATCGGGTTGGAGAAGAAGAGACTGTGCATGACAATACAGCCCTGTGGCTTGGAGACTATGTCT--GTGGAAGCATTTTGAGGATACGATTTCTGAG--------------------------TCCATGCTATTTCTCTATTGTAGCTTAGCTCTGGATTCCTTATGTGCGAATGATTTCGGAGTATA---------AAAACACAGACTCGGTGTCATCATTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140008799 272 - 143122389 AAATTGTAGGTCATTTCCTAGGGAGG------TTTATGCGCAT-ACTTTA-ATACTGTGACGCACTACTTATGAAGTCTCTGGTCTGTTTCTAAAATCGGGTT-GAGAAGAAGAGACTGTGCACGACAATACAGCCCTGTGGCTTGGAGACTATATGA--GTAGAAGCGTTTTGAGGATACGATTTCTGAG--------------------------TCCATGCGATTTCTCTGCTGTAGCTTAGCTGTGGATTCCTTACGTGCGAATGATTTGGGAGTATA---------AAAACACAGACTCAGTGTCATCATTTT i nomLeu3.chr5 M 1625 C 0 s rheMac3.chr1 16726581 267 - 229590362 AAATCGTAGGTCATTTCCCAGGGAGGT-----TTTATGTGAATAACTTTA-ATACTGTGATGCACTACTTATGAAGTCTCTGGGGTGTTTCTAAAATCAGGTT--------GGAGACTGTGCATGACAACGCACCCCTGTGGCTTGGAGACTATGTGA--GTGGAAGCATTTTGAGGATACGATTTTTGAG--------------------------TCCATGCTGTTTCTCTGTTGTAGCTTAGCTGTGGATTCCTTCTGTGCGAATGATTTGAGAGTATA---------AAAACACAGACTCGGTGTCATCATTTT i rheMac3.chr1 C 0 I 913 s macFas5.chr1 223486829 267 - 227556264 AAATCGTAGGTCATTTCCCAGGGAGGT-----TTTATGTGAATAACTTTA-ATACTGTGATGCACTACTTATGAAGTCTCTGGGGTGTTTCTAAAATCAGGTT--------GGAGACTGTGCATGACAATGCACCCCTGTGGCTTGGAGACTATGTGA--GTGGAAGCATTTTGAGGATACGATTTTTGAG--------------------------TCCATGCTGTTTCTCTGTTGTAGCTTAGCTGTGGATTCCTTCTGTGCGAATGATTTGAGAGTATA---------AAAACACAGACTCGGTGTCATCATTTT i macFas5.chr1 C 0 I 906 s papAnu2.chr1 16538773 267 - 220367699 AAATCGTAGGTCATTTCCCAGGGAGGT-----TTTATGTGAATAACTTTA-ATACTGTGATGCACTACTTATGAAGTCTCTGGTCTGTTTCTAAAATCAGGTT--------GGAGACTGTGCATGACAATGCACCCCTGTGGCTTGGAGACTATGTGA--GTGGAAGCATTTTGAGGATACGATTTTTGAG--------------------------TCCATGCTGTTTTTCTGTTGTAGCTTAGCTGTGGATTCCTTCTGTGCGAATGATTTGGGAGTATA---------AAAACACAGACTCGGTGTCATCATTTT i papAnu2.chr1 C 0 I 906 s chlSab2.chr25 82337484 267 + 85787240 AAATTGGAGGTCATTTCCCAGGGAGGT-----TTTATGTGAATAACTTTA-ATACTGTGATGCACTACTTATGAAGTCTCTGGTCTGTTTCTAAAATCAGGTT--------GGAGACTGTGCATGACAGTGCACCCCTGTGGCTTGGAGACTATGTGA--GTGGAAGCATTTTGAGGATACGATTTTTGAG--------------------------TCCATGCCGTTTCTCTGTTGTAGCTTAGCTGTGGATTCCTTCTGTGTGAATGATTTGGGAGTATA---------AAAACACAGACTCGGTGTCATCATTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14002312 276 - 49578535 AAATTGTAGGTCATTTCCCAGGGAGGT-----TTCATGTGAATACCTTTG-ATACTGGGATGCACTATTTAGCAGGTCTCTGGGCAGTTTCT-AAGTCAGGTTGGAGAAGAAGAGACTGTATGTGAAAATGTAGCCCTGTAGCTTTGAGATGATGTGAAGGGGGAAGCATTTTGAAGATGAGATTTTTGAG--------------------------TCTATGATATTTCTCTGTTGTAGCTTAGCTGTGACTCCTGTAGGTGGGAATGAATTGAGAGCATG---------AAAACACAGAATCGGTGTCATCATTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178641724 295 + 195471971 GAAAGGCAAACCATTTTCTGTGGTTTTGTTTGTTTGTGTGAGTGCTTATAGATACAGTG--------------------CTGGGCCTTTTCTACAGAGGGGCAGGAGAAGGACACCTTGTCACTGAACGTGCAGCCC-ATGGCCTCCAGCATCTGTAT--TTGCCAGTGTTTTGAGGATTAGACTCATGAGCCTGTGGTGCTCTCCTGTGGTGCTTTCCCGTGGTGCTTTCCTGTGGTAGCTTAGGTGTGGCTCCCTCAAGGGGCATTGCTTTCAGAGCCTGGTTTCATTCAAAACTCAAAATGAAACTCAAAATTTC i mm10.chr1 C 0 I 1 s canFam3.chr7 36214152 268 + 80974532 GAGTTGCAGACCATTTTCCAGA---TT-----TTTTTGTGAATAACTCTG-ATATTAATCT-CATTACTTACGGGATCTGTGGTCCGTTTCTGCAGGTGGATTGGACAAGAAAAGGTTGTATATGAAAATACAGCCTGGTGGCTTTGCAAATGGATGA--GAGGAAGTATTCTGAGTATA--GTTTATGAG--------------------------TCCATGGTATTGTTCT-TTGTAGTTTAGACACCAATCTTTTAAGTGGGAATGATGTCATAGCACA---------GAAAGACAGGCTCAGCATTATCATTTT i canFam3.chr7 C 0 C 0 a score=135792.000000 s hg38.chr1_KI270759v1_alt 14263 54 + 425601 GTCTACCATTACCCTTTCCTTTAGAAAATC---TGTTTGTGTc--------------------------------------------------------------------------attcatttagaatg s panTro4.chr1 224754232 54 + 228333871 GTCTACCATTACCCTTTTCTTTAGAAAATC---TATTTGTGTc--------------------------------------------------------------------------attcatttagaatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226117890 54 - 229942017 GTCTCCCATTACCATTTTCTTTAGAAAATC---TATTGGTGTc--------------------------------------------------------------------------attcattcagaatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140009071 54 - 143122389 TTCTACCATTACCATTTTCTTTAGAAAATC---TATATGTGGc--------------------------------------------------------------------------attcatttagaatg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 212862633 54 + 229590362 ATCTACCATTACCGTTTTCTTTAGAAAATC---TATTTGTGTc--------------------------------------------------------------------------attcgtttagaatg i rheMac3.chr1 n 913 C 0 s macFas5.chr1 4068287 54 + 227556264 ATCTACCATTACCGTTTTCTTTAGAAAATC---TATTTGTGTc--------------------------------------------------------------------------attcgtttagaatg i macFas5.chr1 n 906 C 0 s papAnu2.chr1 203827778 54 + 220367699 atctACCATTACCGTTTTCTTTAGAAAATC---TATTTGTGTC--------------------------------------------------------------------------ATTCGTTTAGAATG i papAnu2.chr1 n 906 C 0 s chlSab2.chr25 82337751 54 + 85787240 ATCTACCATTACCGTTTTCTTTAGAAAATC---TATTTGTGTc--------------------------------------------------------------------------atttgcttagaatg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14002588 121 - 49578535 GTCTACTATTACTATTTTCTTTGGAAAATC---TGTTTGTTTCTACCAATCTAAAAAACATTTCATA-------ACAATGAGAGAACATTGTGTCTTTAGAaataattgcaaattaaattcatttagaatg i calJac3.chr19 C 0 C 0 s mm10.chr1 178642020 57 + 195471971 CTTTCTCCTCACttcccccttatcaacatcttgtatttgtgtg--------------------------------------------------------------------------gtgcatttgttatg i mm10.chr1 I 1 I 1321 s canFam3.chr7 36214420 116 + 80974532 GTCTACTGTTAGCATGGACTTTAGAAAATG---TATCTGTTAC------------AAGCAGTCTGTAAGCTTTCATAATGAAGTGACACTGGGCTTTTAGAAACAACTGTAActtaaatttactcaggatg i canFam3.chr7 C 0 C 0 a score=62104.000000 s hg38.chr1_KI270759v1_alt 14317 21 + 425601 ttgccgttaacaaagtatttt- s panTro4.chr1 224754286 21 + 228333871 ttgccgttaacaaagtatttt- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226117944 21 - 229942017 ttactgttaacaaagtgtttt- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140009125 21 - 143122389 ttactgttaacaaagtgtttt- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 212862687 21 + 229590362 ttactgttaactaagtgtttt- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 4068341 21 + 227556264 ttactgttaactaagtgtttt- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 203827832 21 + 220367699 TTACTGTTAACTAAGTGTTTT- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82337805 21 + 85787240 ttactgttaactaagtgtttt- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14002709 21 - 49578535 ttactgttaacgaagtgttct- i calJac3.chr19 C 0 I 1342 s canFam3.chr7 36214536 22 + 80974532 tttccattcacaaagcacttct i canFam3.chr7 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I a score=227847.000000 s hg38.chr1_KI270759v1_alt 14338 90 + 425601 atgtatactattttatttggacattatgatggtccacgctgtgaggtcagccagctat---tgttcatatttgttccagatgagagactggag s panTro4.chr1 224754307 90 + 228333871 atgtatactattttatttggacattatgatggtccacgctgtgaggtcagccagctat---tgttcatatttgttccagatgagagactggag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226117965 93 - 229942017 atgtatactgttttatttggccattatgatggtcgacgctgtgaggtcagccagctattgctgttcatatttgttccagatgagagactggag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140009146 93 - 143122389 atgtatactattttatttggccattatgatggtccaccctgtgaggtcagccagctattgttgttcatatttgttccagatgagaaactggag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 212862708 81 + 229590362 aggtatactattttatttggccattatgatggtccaccccgtgaggtcagccagc------------tatttgttccagatgagagactggag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 4068362 81 + 227556264 aggtatactattttatttggccattatgatggtccaccccgtgaggtcagccagc------------tatttgttccagatgagagactggag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 203827853 81 + 220367699 AGGTATACTATTTTATTTGGCCATTATGATGGTCCACCCCATGAGGTCAGCCAGC------------TATTTGTTCCAGATGAGAGACTGGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82337826 93 + 85787240 aggtatactatttcatttggccattatgatggtccaccccgtgaggtcagccagctattgttgttcatatttgttccagatgagagactggag i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36214558 93 + 80974532 acatgtattattttatttgactgttaggatgctcagccctatgaggtggatcagctcttgttatacttatttgtcccagatgagagactgggg i canFam3.chr7 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I e calJac3.chr19 14002730 1342 - 49578535 I a score=71885.000000 s hg38.chr1_KI270759v1_alt 14428 29 + 425601 gttcagagcagcaatgtgccctgcaca--cc s panTro4.chr1 224754397 29 + 228333871 gttcagagcagcaatgtgccgtgcaca--cc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226118058 29 - 229942017 gttcagagcagcaaagtaacatgtaca--cc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140009239 29 - 143122389 gttcagagcagcaatgtgacgtgtaca--cc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 212862789 29 + 229590362 gttcagagcagcaatgtgacgtgcacaCC-- i rheMac3.chr1 C 0 I 34 s macFas5.chr1 4068443 27 + 227556264 gttcagagcagcaatgtgacgtgcaca---- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 203827934 27 + 220367699 GTTCAGAGCAGCAATGTGACGTGCACA---- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82337919 27 + 85787240 gttcagagcagcagtgtgacgtgcaca---- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14004072 26 - 49578535 GCTCAGAGCAGCAGTGTGACATGCAC----- i calJac3.chr19 I 1342 C 0 s canFam3.chr7 36214651 29 + 80974532 gttcggagcagttatggaatatgccca--ct i canFam3.chr7 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I a score=11528.000000 s hg38.chr1_KI270759v1_alt 14457 40 + 425601 tccacacagt-tcacac----------------------------------------------------------------------------------------agtgctcagaacAGCAATGTGCCG s panTro4.chr1 224754426 41 + 228333871 tccacacaCCACCACAC----------------------------------------------------------------------------------------AGTGCTCAGAACAGCAATGTGCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226118087 129 - 229942017 accacacaCCACCACACAGTTAGTGCTCAGAGCAGCAATGTGACGTGCACACAACACAGTTAGTGCTCACAGCAGCAATGTGACGTGCACACCTCCACACAGTTAAGTGCTCAGAACAACAATGTGACG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140009268 125 - 143122389 accacacGCCACCACATAGTTAGTGCTCGGAGCAGCAATGTGACATGCACACAACACAGTTAGTGCTCGGAGCAGCAATGTGACAAGCACA---CAACACAGTT-AGTGCTCGGAGCAGCAATGCGCCA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 4068470 33 + 227556264 --------CCACAACGC----------------------------------------------------------------------------------------AGTGCTCAGAACAGCAATGTGACG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 203827961 33 + 220367699 --------CCACAACAC----------------------------------------------------------------------------------------AGTGCTCAGAACAGCAATGCGAcg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82337946 33 + 85787240 --------ccacaacac----------------------------------------------------------------------------------------agTGCTCAGAACAGCAATGTGACG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14004098 35 - 49578535 ----------CCCACACAGTC------------------------------------------------------------------------------------AGTGCTCAGAATAGCAGTGTGACT i calJac3.chr19 C 0 I 2 s canFam3.chr7 36214680 23 + 80974532 ----------gtcatgtaatt------------------------------------------------------------------------------------agagctgaggcc------------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I e rheMac3.chr1 212862818 34 + 229590362 I a score=2151.000000 s hg38.chr1_KI270759v1_alt 14497 3 + 425601 TGC s panTro4.chr1 224754467 3 + 228333871 TGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226118216 3 - 229942017 TGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140009393 3 - 143122389 TGC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 4068503 3 + 227556264 tgc i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82337979 3 + 85787240 TGc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14004135 1 - 49578535 T-- i calJac3.chr19 I 2 C 0 e mm10.chr1 178642077 1321 + 195471971 I e canFam3.chr7 36214703 0 + 80974532 C e rheMac3.chr1 212862818 34 + 229590362 I e papAnu2.chr1 203827994 0 + 220367699 C a score=6620.000000 s hg38.chr1_KI270759v1_alt 14500 5 + 425601 ACACC s panTro4.chr1 224754470 5 + 228333871 ACACC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226118219 5 - 229942017 ACACC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140009396 5 - 143122389 ACACC i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82337982 5 + 85787240 acacc i chlSab2.chr25 C 0 I 97 s calJac3.chr19 14004136 5 - 49578535 GCACC i calJac3.chr19 C 0 I 1 e mm10.chr1 178642077 1321 + 195471971 I e canFam3.chr7 36214703 0 + 80974532 C e rheMac3.chr1 212862818 34 + 229590362 I e papAnu2.chr1 203827994 0 + 220367699 C e macFas5.chr1 4068506 0 + 227556264 C a score=84553.000000 s hg38.chr1_KI270759v1_alt 14505 118 + 425601 ACACACCCTGTTCAGTGCAGAGGCA-GCAGGCAGGACCCCAGGACTTCTGAGTCCTGATCCAAAGCTACTTCCTCAA-AATCCCTTTACTACTTTATTATTATTATTTTTTA---aatagact s panTro4.chr1 224754475 117 + 228333871 ACACACCCTGTTCAGTGCAGAGGCA-GCAGGCAGGACCCCAGGACTTCTGAGTCCTGATCCAAAGCTACTTCCTCAA-AATCCCTTTACTACTTTATTATTATTA-TTTTTA---aatagact i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226118224 118 - 229942017 ACACACAGTGTTCAGTGCAGAGGCA-GCAGGCAGGACCCCAGGACTTCTGAGTCCTGATCCAAAGCTACTTCCTCAA-AATCCCTTTACTACTTTATTATaaaaatttttta---aatagact i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140009401 110 - 143122389 ACACGCAGTGTTCAGTGCAGAGGCA-GCAGGCAGGACCCCAGGACTTCTGAGTCCTGATCCAAAGCTACTTCCTCAA-AATCCCTTTACTACTTTATT--------TTTTtt---aatagact i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14004142 114 - 49578535 GGACAGCATGTTCAGTGCAGACGCAGGCAGGCAGGACCCCAGGATTTCTGAGTCCTGATCGACAGCCACTTCCTGGA-AATCCCTTTACTACCTTATt--------ttttaaaataatagagt i calJac3.chr19 I 1 I 312 s canFam3.chr7 36214703 93 + 80974532 -----------------cagaggcaggcaggctggaacacagagctact---tcaaaatcca-acctcctttttaAACAAtttaataaatttattattactattatttctta---aa------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I e rheMac3.chr1 212862818 34 + 229590362 I e chlSab2.chr25 82337987 97 + 85787240 I e papAnu2.chr1 203827994 0 + 220367699 C e macFas5.chr1 4068506 0 + 227556264 C a score=198327.000000 s hg38.chr1_KI270759v1_alt 14623 234 + 425601 ttttaaaaagcagttttcagct--tatagaaa-aaaagtgaatgaaaagtac---agaattcccatgtgccgcctc-tcgttctcctcagtttcccctgttattagcatcttgccttagtgtgctacgtttgtttcaactgatgacccaatattgatacgttattgtta-acta-----aagtttatagtttatgttagggttcactctttgtcttgtacattgtatgagttttgacaaatgaataa s panTro4.chr1 224754592 234 + 228333871 ttttaaaaagcagttttcagct--tatagaaa-aaaagtgaatgaaaagtac---agaattcccatgtgccgcctc-tccttctcctcagtttcccctgttattagcatcttgccttcgtgtgctacatttgtttcaactgatgagccaatatggatacattattgtta-acta-----aagtttatagtttaccttagggttcactctttgtcttgtacattgtatgggttttgacaaatgaataa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226118342 235 - 229942017 ttttaaaaagcagttttcagct--tatagcaa-aaaagtgaatgaaaagtac---agaattcctatgtgccgcctc-tccttctcctcatttagacctgttattagcatcttgccttagtgtgctacatttgtttcaactgatgagccaatattgatacatttttgtaagggta-----aagtttatagtttaccttagggttcactctttttttattgcattgtttgagttttgatgaatgaataa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140009511 228 - 143122389 ttttaaagagcagttttcagct--tatagaaa-aaaagtgaatgaaaagtac---agaattcccatgtgccacctc-tccttctcctcaatttcccctgttattagcatcttgccttagtgtgctacatttgtttcagctgatgagccaatattgatacattatcgtta-acta-----aattttatag------ttagggttcactctttgtcttgtacattgtttcagttttgacaaatgaataa i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14004568 230 - 49578535 ttttataaagtaa-tttctgct--agtaggaacaaaagtgagtggaacgtct---ggaacccccttgtgccgcctc-tccttcccctcaacttccc--gttattcacgtcttgcctcagtgtgctcca-ttgtttcagcagatgaaccaatgtgaatacattaatgtta-ccta-----cagtttatagcctacctcagggttca-tctttgtcttatgtgttgtgtgagttttgacaaatgaatCA i calJac3.chr19 I 312 C 0 s canFam3.chr7 36214796 240 + 80974532 ---taaaaagaagctttgggtttctatagaaa-aaaagtgagcaagaagtacatgaaagttcccctgtgccttcttatcccactcctcagcctccc--tatattcacagctgggcacagtgtgacacatttgttctaattgacgggcccatattgatacattattatta-attattatgaggtccccagtttgcattagggttcactctttgtgttgtacattctatgagttttgatcaatgtatga i canFam3.chr7 C 0 I 4454 e mm10.chr1 178642077 1321 + 195471971 I e rheMac3.chr1 212862818 34 + 229590362 I e chlSab2.chr25 82337987 97 + 85787240 I e papAnu2.chr1 203827994 0 + 220367699 C e macFas5.chr1 4068506 0 + 227556264 C a score=14627.000000 s hg38.chr1_KI270759v1_alt 14857 22 + 425601 AGACCCAGTGATCATGATCAAG s panTro4.chr1 224754826 22 + 228333871 tgacCCAGTGATCATGATCAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226118577 22 - 229942017 tgacCCAGTAATCATGATCAAG i ponAbe2.chr1 C 0 I 10 s nomLeu3.chr5 140009739 22 - 143122389 cgacCCAGTGATCATGATCAAG i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14004798 22 - 49578535 CGGCCCAGAGATCGTGATGCAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I e canFam3.chr7 36215036 4454 + 80974532 I e rheMac3.chr1 212862818 34 + 229590362 I e chlSab2.chr25 82337987 97 + 85787240 I e papAnu2.chr1 203827994 0 + 220367699 C e macFas5.chr1 4068506 0 + 227556264 C a score=45631.000000 s hg38.chr1_KI270759v1_alt 14879 154 + 425601 TGTGATTTCCCCAAAGTGAGATGTGTTGTCCTTCACAGAGCACACTTAGTGCAGTGGCGGTCAATCTAACTGGTTTTTTTTGTTGTTGTTtttgttttgttttatttatttatttattttggtggcttagtctc-ctctgtcacccaggctggag s panTro4.chr1 224754848 154 + 228333871 TGTGATTTCCCCAGAGTGAGATGTGTTGTCCTTCACAGGGCACATTTAGTGCAGCGGCGGTCAGTCTAACTGGTTTTTTTGGTTGTTGTTtttgttttgttttatttatttatttattttggtggcttagtctc-ctctgtcacccaggctggag i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140009761 131 - 143122389 TGTGATTTCCCCCAAGTGAGGTGCATTGTCCTTCACAGAGCACATTTAGTGCAGTTGCAGTCAGTCTAACTGG----------------------GTTGttttatttctttattt-ttttggtgacggagtctc-ctctgtcacccaggctggag i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14004820 119 - 49578535 GGTGATTTCCGCAAAGTGGGCTGTGTTTTTTGTCACAGAGCACATTTCGTGCACTTGCAGTCAGTGTTACt---------------------------------ttttttttttt-tttttgagac--agtctcactttgtcacccaggctggag i calJac3.chr19 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I e canFam3.chr7 36215036 4454 + 80974532 I e rheMac3.chr1 212862818 34 + 229590362 I e chlSab2.chr25 82337987 97 + 85787240 I e papAnu2.chr1 203827994 0 + 220367699 C e macFas5.chr1 4068506 0 + 227556264 C e ponAbe2.chr1 226118599 10 - 229942017 I a score=102509.000000 s hg38.chr1_KI270759v1_alt 15033 141 + 425601 tgcaatggtgtgatcttggctcactgcaacctccgcctcccaagttcaagcaattctcctgcctcagccttctgagtagctgggattacagacacacgccaccatgcccggctaatatttgtatttttagtagagatgggg s panTro4.chr1 224755002 141 + 228333871 tgcaatggtgtgatcttggctcactgcaacctccgcctcccaagttcaagcaattctcctgcctcagccttctgagtagctgggattacagacacgcgccaccatgcccggctaatatttgtatttttagtagagatgggg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226118609 141 - 229942017 tgcaatggtgtgatcttggctcactgcaacctctgcctcccaagttcaagcaataagagggcctcagcctcctgagtaactgggattacaggcactcaccaccacgcccggctaatatttgtatttttagtagagagaggg i ponAbe2.chr1 I 10 C 0 s nomLeu3.chr5 140009892 141 - 143122389 tgcaatggtacgatcctggctcactgcaacctccacctcccaagttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcgcacaccaccatgcccggctaatttttgtatttttagtagagatgggg i nomLeu3.chr5 C 0 I 4121 s calJac3.chr19 14004939 139 - 49578535 tacgatggtgcgatctcggttaactgcaacctctgtctcccaggttcaagccatccttctgtctcagcttcctgagtagctgggacaacagg-acttgccaccactcctggctgagttttgtatttttagtagagagggg- i calJac3.chr19 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I e canFam3.chr7 36215036 4454 + 80974532 I e rheMac3.chr1 212862818 34 + 229590362 I e chlSab2.chr25 82337987 97 + 85787240 I e papAnu2.chr1 203827994 0 + 220367699 C e macFas5.chr1 4068506 0 + 227556264 C a score=10028.000000 s hg38.chr1_KI270759v1_alt 15174 20 + 425601 tttcattgtatcggtcaggc s panTro4.chr1 224755143 20 + 228333871 tttcattgtatcggtcaggc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226118750 20 - 229942017 tttcactgtattggtcaggc i ponAbe2.chr1 C 0 C 0 s calJac3.chr19 14005078 20 - 49578535 tttcaccgtattggtcaggc i calJac3.chr19 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I e canFam3.chr7 36215036 4454 + 80974532 I e rheMac3.chr1 212862818 34 + 229590362 I e chlSab2.chr25 82337987 97 + 85787240 I e papAnu2.chr1 203827994 0 + 220367699 C e macFas5.chr1 4068506 0 + 227556264 C e nomLeu3.chr5 140010033 4121 - 143122389 I a score=2010.000000 s hg38.chr1_KI270759v1_alt 15194 3 + 425601 tgg s panTro4.chr1 224755163 3 + 228333871 tgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226118770 3 - 229942017 tgg i ponAbe2.chr1 C 0 C 0 s papAnu2.chr1 203827994 3 + 220367699 tgc i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14005098 3 - 49578535 tgg i calJac3.chr19 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I e canFam3.chr7 36215036 4454 + 80974532 I e rheMac3.chr1 212862818 34 + 229590362 I e chlSab2.chr25 82337987 97 + 85787240 I e macFas5.chr1 4068506 0 + 227556264 C e nomLeu3.chr5 140010033 4121 - 143122389 I a score=157481.000000 s hg38.chr1_KI270759v1_alt 15197 76 + 425601 tcttgaactcttgatttcaggtgatctccccgcgtcgtcctcccaaagtgctgggattacaggcgtaagccaccgt s panTro4.chr1 224755166 76 + 228333871 tcttgaactcttgacctcaggtgatctccccgcgtcgtcctcccaaagtgctgggattacaggcgtgagccaccgT i panTro4.chr1 C 0 M 2974 s ponAbe2.chr1 226118773 76 - 229942017 ccttgaactcctgacctcaggtgatctgcccgcctcgtcctcccaaagtgctgggattacaggtataagccaccgt i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 212862852 76 + 229590362 tcttgaactcctgacctcaggtgatctgcccgccttgacctcccaaagtgttgggattacaggcgtgatccactgt i rheMac3.chr1 I 34 C 0 s macFas5.chr1 4068506 76 + 227556264 tcttgaactcctgacctcaggtgatctgcccgccttgacctcccaaagtgttgggattacaggcgtgatccactgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 203827997 76 + 220367699 tcttgaactcctgacctcaggtgatctgcccgccttgacctcccaaagtgttgagattacaggcgtgatccactgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82338084 76 + 85787240 tcttgaactcctgacctcaggtgatctgcctgccttggcctcccaaagtgttgggattacaggcgtgatccactgt i chlSab2.chr25 I 97 C 0 s calJac3.chr19 14005101 70 - 49578535 tctcaaactcctgacgtcaggtgatctggcc------tgatgccaatgtgctgggattacaggcgtgagccactgc i calJac3.chr19 C 0 C 0 e mm10.chr1 178642077 1321 + 195471971 I e canFam3.chr7 36215036 4454 + 80974532 I e nomLeu3.chr5 140010033 4121 - 143122389 I a score=61412.000000 s hg38.chr1_KI270759v1_alt 15273 29 + 425601 acctggccTGTGTTTTTCAAATGTAAACA s ponAbe2.chr1 226118849 29 - 229942017 acctggccTGTGTTTTTCAAATGTAAACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140014154 29 - 143122389 ACCTAACTGATGTTTTTCAAATGTAAACC i nomLeu3.chr5 I 4121 C 0 s rheMac3.chr1 212862928 28 + 229590362 acctggccTGTG-TTTTCAAATTTAAACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 4068582 28 + 227556264 acctggccTGTG-TTTTCAAATTTAAACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 203828073 28 + 220367699 acctggcctgtg-tTTTCAAATTTAAACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82338160 28 + 85787240 acctggccTGTG-TTTTCAAATTTAAACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14005171 27 - 49578535 acctggccTGT--TTCTCAAATGTAAACC i calJac3.chr19 C 0 C 0 s mm10.chr1 178643398 29 + 195471971 ATCTAACTGATGTTTTCCAAAGGTAAACT i mm10.chr1 I 1321 C 0 e canFam3.chr7 36215036 4454 + 80974532 I e panTro4.chr1 224755242 2974 + 228333871 M a score=249651.000000 s hg38.chr1_KI270759v1_alt 15302 80 + 425601 AAAGGCCATCAAGCAGTGACAGTTCATCTCCTGACTTCATTTTTATTGTCACAAAAGTGTTCTGGTTAGAAAGAAAAAAA s ponAbe2.chr1 226118878 80 - 229942017 AAAGGCCATCAAGCGGTGACAGTTCATTTCCTGACTTCATTTTTATTGTCACAAAAGTGTTCTGGTTAGAAAGAAAAAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140014183 78 - 143122389 AAAGGCC-TCAAGCAGCTACAGTTTATCTCCTGACTTCCTTTTTATTGTCAC-AAGGTGTTCTGTTTAGAAAGAAAACAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 212862956 80 + 229590362 AAAGGCCATCAAGCAGTGACAGTTCATCTCCTGACTTCATTTTTATTGTCACAAAAGTGTTCTGGTTAGAAAGAAAAAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 4068610 80 + 227556264 AAAGGCCATCAAGCAGTGACAGTTCATCTCCTGACTTCATTTTTATTGTCACAAAAGTGTTCTGGTTAGAAAGAAAAAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 203828101 80 + 220367699 AAAGGCCATCAAGCAGTGACAGTTCATCTCCTGACTTCATTTTTATTGTCACAAAAGTGTTCtggttagaaagaaaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82338188 80 + 85787240 AAAGGCCATCAAGCAGTGACAGTTCATCTCCTGACTTCATTTTTATTGTCACAAAAGTGTTCTGGTTAGAAAGAAAAAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14005198 80 - 49578535 AAAGGCCATAAAGCAGTGACAGTTCATCTTTTGACTTCATTTTTGCTGTCACAAAGGGGTTCTGAGTAGTGAGGAAGAAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178643427 79 + 195471971 GAAAGCCATCAAGTAGT-AGAGTTTATCTCTCGACTTCATTTTTATTGCCACAACTCCGTTCTGTTTAGAAAGCAAACAA i mm10.chr1 C 0 C 0 s canFam3.chr7 36219490 80 + 80974532 AGAAGTCATCAAGCAACAGCACTATATCTCCTGACTTTGCTCTTGTTGTCACAGGGCTGTTCTGTTTGGAAAGAAAACAA i canFam3.chr7 I 4454 T 4526 e panTro4.chr1 224755242 2974 + 228333871 M a score=-1271.000000 s hg38.chr1_KI270759v1_alt 15382 3 + 425601 --ATc s ponAbe2.chr1 226118958 2 - 229942017 ---Tc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140014261 3 - 143122389 --GCC i nomLeu3.chr5 C 0 T 2277 s rheMac3.chr1 212863036 5 + 229590362 AAATc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 4068690 5 + 227556264 AAATc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 203828181 5 + 220367699 aaatc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82338268 5 + 85787240 AAATC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14005278 1 - 49578535 c---- i calJac3.chr19 C 0 C 0 s mm10.chr1 178643506 3 + 195471971 --GCC i mm10.chr1 C 0 T 462 e canFam3.chr7 36219570 4526 + 80974532 T e panTro4.chr1 224755242 2974 + 228333871 M a score=5019.000000 s hg38.chr1_KI270759v1_alt 15385 4 + 425601 acat s ponAbe2.chr1 226118960 4 - 229942017 acat i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 212863041 4 + 229590362 acat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 4068695 4 + 227556264 acat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 203828186 4 + 220367699 acat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82338273 4 + 85787240 GCAt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14005279 4 - 49578535 aggt i calJac3.chr19 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36219570 4526 + 80974532 T e nomLeu3.chr5 140014264 2277 - 143122389 T e panTro4.chr1 224755242 2974 + 228333871 M a score=543238.000000 s hg38.chr1_KI270759v1_alt 15389 317 + 425601 atccaccattacagtatcacacaga---gtcgtttcactaccctaaa--gccccctgttctct--------------------------------------------------------ctctattcatccttcccaccatccaccctcatccctggcagccagtggtctttttctgtctgcacagttgtgccttttctagaatgtcagatagttgtaaccatgtactgtgcctttACCACCATGTTGAGCC-TTGATGTGTTTCCTTCGTTGGTTTTATCAATAACAACG--AACATTCACT-GGTTTCTTTCCATCGAAGTT-ACATTTTTTCATGAAGGTAAACTCTTAAACAAGTGTCTCTTT-TTGTCACCCTCTCCTA s ponAbe2.chr1 226118964 374 - 229942017 atccaccattacagtatcacacaga---gtagattcactaccctaaa--accccctgttctctatctattcatcctttctgccatccaccctcatccctggcagccagtcctgttctctgtctattcatccttcccactatccaccctcatccctggcagccagtggtctttttctgtctgcacagttgtgccttttctagaatgtcagatagttgtaaccatgtactacgcctttACCATCATGTTAAGCC-TTGATGTGTTTCCTTCATTGGTTTTATCAATAACAATG--AACATTCACTAGGTTTCTTTCCATTGAAGTT-AAATTTTTTCATGAAGATATGCGCTTAAACAAGTGTCTCTTT-TTATCACAATCTCCTA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 212863045 318 + 229590362 atccaccattacagtatcacacaga---gtagtttcactaccctaaa--accccatgttctct--------------------------------------------------------atgtattcatcctttgtgccatccaccctaattcctggcagccaggggtctttttctgtct-cacagttgtgccttttctggaatgtcagatagttgtaaccatGTGCTGTACCTTTACCACCATGTTAAGCT-TTGATGTGTTTCCTACACTGGTTTTATCAATAACAATG--AACATTCACTAGGTTTCTTTCCATTGAAGTTAAATTTTTTTCATGAAGATATGCGCTTAAACAAGTATCTCTTT-TTATCACCATCTCCTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 4068699 318 + 227556264 atccaccattacagtatcacacaga---gtagtttcactaccctaaa--accccatgttctct--------------------------------------------------------atgtattcatcctttgtgccatccaccctaattcctggcagccaggggtctttttctgtct-cacagttgtgccttttctggaatgtcagatagttgtaaccatGTGCTGTACCTTTACCACCATGTTAAGCT-TTGATGTGTTTCCTACACTGGTTTTATCAATAACAATG--AACATTCACTAGGTTTCTTTCCATTGAAGTTAAATTTTTTTCATGAAGATATGCGCTTAAACAAGTATCTCTTT-TTATCACCATCTCCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 203828190 318 + 220367699 atccaccattacagtatcacac-GA---GTAGTTTCACTACCCTAAA--ACCCCGTGTTCTCT--------------------------------------------------------ACGTATTCATCCTTCGTGCCATCCTCCCTAATTCCTGGCAGCCAGTGGTCTTTTTCTGTCTGCACAGTTGTGCCTTTTCTGGAATGTCAGATAGTTGTAACCATGTGCTGTACCTTTACCACCATGTTAAGCT-TTGATGTGTTTCCTACACTGGTTTTATCAATAACAATG--AACATTCACTAGGTTTCTTTCCATTgaagttaaatttttttcatgaagATATGCGCTTAAACAAGTATCTCTTT-TTATCACCATCTCCTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82338277 316 + 85787240 atccaccattacagtatcacac-aa---gtagtttcactaccct-ac--accccgtgttctct--------------------------------------------------------atgtattcatccttcgtgccatccaccccaattcctggcagccagtggtctttttctgtctgcacagttgtgccttttctggaatgtcagatagttgtaaccatGTGCTGTACCTTTACCACCATGTTAAGCT-TTGATGTGTTTCCTTCGCTGGTTTTATCAATAACAATG--AACATTCACTAGGTTTCTTTCCATTGAAGTT-AATTTTTTTCATGAAGATATGTGCTTAAACAAGTATCTCTTT-TTATCACCATCTCCTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14005283 312 - 49578535 atccaccattgcagtatcatat--------ggtttcactgccgtaaaatatctcctgttctct------------------------------------------------------------gttcacccttcctgccatccacccgaatccctggccgccagtggtgtttttctgtctgcagagttgtgccttttctggaatgtcagatagcagtaaccgtgtactgtgcctttATCACCATGTCAAGCC-TTAATGCGTTTCGTTCATTGGTTTTATCAGTAACAATG--AAAATTCACTGGGTATCTTTCCATTTAAGTTAAAACATTTTCATGAAGATATGTGCTTAAAGAAGCGTCTCTGT-TTATCACCGTCTCCTA i calJac3.chr19 C 0 I 310 s canFam3.chr7 36215044 311 + 80974532 atcctccattacagtag-gtacagaatgatggtttcactgccttaaa-catcccctgggctgt--------------------------------------------------------gcttattcacccct----ctgtcctctctaaccccaggcaaccaccgattgtttgcctgccccctagttttgtcttttccagaaagtcatatagttggaatcatatgatatctttctattacctttttaaactcccaacattttcccttcattgtttgtatcaatagCAATGACAGAATTTACAATGTT--------CTGAGATGAAACGTCTTTT---GGAACATGTGCATAAAGAAGGCTCTTTCTCTTACAACTATCTCCTG i canFam3.chr7 T 4526 C 0 e mm10.chr1 178643509 462 + 195471971 T e nomLeu3.chr5 140014264 2277 - 143122389 T e panTro4.chr1 224755242 2974 + 228333871 M a score=295766.000000 s hg38.chr1_KI270759v1_alt 15706 149 + 425601 GGCCTATTCTTGCTATTGGTTAGAATGTGGCCAATAGATTCACCTCAT----GGTAGCAATGTCCTTGC-------TGAATATAACAAATCTGATGGTTGTCATCTACCAAGAATTTTGTTTCTCTGAGGAAAATCAGCAAAACTCTCATTTCAGTTCTA s ponAbe2.chr1 226119338 149 - 229942017 GGCCTATTCTTGCTATTGGTTAGAATGTGGCCAACAGATTCACCTCAT----GGTAGCAATGTCCTTGC-------TGAATATAACAAACCTGATGGTTGTCATCTACCAAGAATTTTGTTTCTCTGAGGAAAATCAGCAAAACTCTCATTTCAGTTCTA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 212863363 152 + 229590362 GGCCTATTCTTGCTATTGGTTAGAATGTGGCCAATAGATTCACCTCATGGTAGGTAGCAATGTCCTTGC-------TGAATATAACAAACTTGATGGTTGTCATCTACCAAGAACCTTGTTTCTCTGA-GAAAATCAGCAAAACTCTCATTTCAGTTCTA i rheMac3.chr1 C 0 n 0 s macFas5.chr1 4069017 152 + 227556264 GGCCTATTCTTGCTATTGGTTAGAATGTGGCCAATAGATTCACCTCATGGTAGGTAGCAATGTCCTTGC-------TGAATATAACAAACTTGATGGTTGTCATCTACCAAGAACCTTGTTTCTCTGA-GAAAATCAGCAAAACTCTCATTTCAGTTCTA i macFas5.chr1 C 0 n 0 s papAnu2.chr1 203828508 152 + 220367699 GGCCTATTCTTGCTATTGGTTAGAATGTGGCCAATAGATTCACCTCATGGTAGGTAGCAATGTCCTTGC-------TGAATATAACAAACTTGACGGTTGTCATCTACTAAGAACCTTGTTTCTCTGA-GAAAATCAGCAAAACTCTCATTTCAGTTCTA i papAnu2.chr1 C 0 n 0 s chlSab2.chr25 82338593 152 + 85787240 GGCCTATTCTTGCTATTGGTTAGAATGTGGCCAATAGATTCACCTCATGGTAGGTAGCAGTGTCCTTGC-------TGAATATAACAAACTTGATGGTTGTCATCTACCAAGAACCTTGTTTCTCTGA-GAAAATCAGCAAAACTCTCATTTCAGTTCTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14005905 146 - 49578535 GGCCTATTCTTACCATTGTTTAGAACGTGGTCAATAGATTCACTTCGT----GGTGGCA-TGTCCTTGC-------TTAATATAACAAACCTGATGGTTGTCATCTACCAAGAATTTTGTTTCTCTGAGGAAAATCAGCAAAA--CTCACTTCAGTTCTA i calJac3.chr19 I 310 C 0 s canFam3.chr7 36215355 144 + 80974532 TGCTCATTCTTACCACTGGCTGGAATATGGTTGATGGATTTCTCTCTT----GGTTAAGAGGTCTTTGCTTAATATTTAATATAACAAACCTTAATGTTGGCACATATCAAGAATTTTGTTCCTTTGAGGGAAATCAGCAAAATTCTT------------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e nomLeu3.chr5 140014264 2277 - 143122389 T e panTro4.chr1 224755242 2974 + 228333871 M a score=24968.000000 s hg38.chr1_KI270759v1_alt 15855 53 + 425601 GTGTAGCCTAGCCATGCTAGGCTGTTTTGTAAATGATGACTATTAGGAGATAT s ponAbe2.chr1 226119487 53 - 229942017 GTGTAGCCTAGCCATGCTAGGCTGTTTTGTAAGTGGTGACTATCAGGAGATAA i ponAbe2.chr1 C 0 C 0 s chlSab2.chr25 82338745 53 + 85787240 GTGTAGCCTAGTCATGCTAGGCTGTTTTGTAAATGATGACTATCaggaggtaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14006051 51 - 49578535 GTGTAGCCTAACCATGATAGGC--TTTTGTAAATGATGATTATCAGGAGCTAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36215499 33 + 80974532 CTGCAGCCTAACCATGAT------CTTT--------------TTACGAGAGAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e rheMac3.chr1 212863515 0 + 229590362 I e papAnu2.chr1 203828660 0 + 220367699 I e macFas5.chr1 4069169 0 + 227556264 I e nomLeu3.chr5 140014264 2277 - 143122389 T e panTro4.chr1 224755242 2974 + 228333871 M a score=325054.000000 s hg38.chr1_KI270759v1_alt 15908 346 + 425601 ttgtatccattgagatggagaacaccgaagcttcgaaggaggaaaca-gcttgcccaagtaaagaccattaggagaacacaaaataaccaccaaggcttccttattcccatttgagatgctGCTGATTG-AGCCGCAATTGGCCAGTGCTCTAAAACCGAGGCCTGGAAAGGACAGGCCATGCCAGTTCGCTCAGCCATTCAACCCAGCAGCCCTGACTATTGTAGCCAAGGTGATGGACTTGATTCCCATAGAAAGCAGC--ATCACCTTGGAGCTCACCTTTAACTCCTGGAGGCTGGCAGGGCCCCTGTGGCCACA-ACTAGACTGTGAGAGGAACCAAGAAAGTACG s ponAbe2.chr1 226119540 346 - 229942017 TTTTATCTATTGCGATGGAGACCACTGAAGCTTTGAAGGAGGAAACA-GCTTGCCCAAGTAAAGACCATTAGGAGAACACAAAATAACCACCAAGGCTTCCTTATACCCATTTGAGATGCTGCTGATTG-AGCCGTGATTGGCCAGTGCTCTAAAACCGAGGCCTGGAAAGGACAGGCCATGCCAGTTCGCTCAGCCATTCAACCCAGCAGCCCTGACTATTGTAGCCAAGGCAATGGACTTGATTCCCACAGAAAGCAGC--ATCACCTTGGAGCTCACCTTTAACTCCTGGAGGCTGGCAGGGCCCCTGTGGCCACA-ACTAGACTGTGAGAGGAACCAAGAAAGTACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140011987 347 - 143122389 TTTTATCTATTGAGATGGAGAACACTGAAGCTTCGAAGGAGGCAACACGCTTGCCCAAGTAAAGACCATTAGGAGAACACAAAATAACCACCAAGGCTTCCGTATTCCCATTTGAGATGCTGCCGATTG-AGCCGCGGTTGGCCAGTGCTCCAAAACCAAGGCCTGGAAAGGACAGGCCATGCCAGTTCGCTCAGCCATTCAACCCAGGAGCCCTGACTATTGTAGCTAAGGTGATGGACTTGATTCCCATAGAAAGCAGC--ATCACCTTGAAGCTCGCCTTTAACTCCTGGAGGCTGGCAGGGCCCCTGTGGCCACA-ACTAGACTGTGAGAGGAGCCAAGAAAGTACA i nomLeu3.chr5 T 2277 C 0 s chlSab2.chr25 82338798 345 + 85787240 ttttatctattgcaatggggaacactgaagctttgaaggaggaaaca-gcttgcccaagtaaagaccattaggagaacacaaaataaccaccaaggcttccttattcccatttgagatgctGCTGACTG-AGCCGCGATTGGCCAGTGCTCTAAAACCGAGGCCTGGAAAGGACAGGCCACGCCAGTTCGCTCAGCCATTCAACCCAGGAGCCCTGACTATT-TAGCCAAGGTGATAGACTTGATTCCCATAGAAAGCAGC--ATCACCTTGGAGCTTACGTTTAACTCCTGGAGGCTGGCAGGGCCCCTGTGGCCACA-ACTAAACTGAGAGAGGAACCAAGAAAGTACG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14006102 344 - 49578535 TTGTCTCCATTGCGACGGAGAACACTGAAGCTTTGAAGAAGGAAACA-GCTTGCCCAAGCAAAGACCATTAGGAGAACACACAGTATCCACTGGGGCTTCCTCATTCTCATTCGAGAGGCCGCTGATTG-AGCCGTGATTGGCCAGTGCCCTAAAACGGAGG-CTGGAAGGGACAAACCATGCCAATTAGCTCATCCATTCAGCCCAGGAGCCTTCACTGTTGTAGCCAAGGCGGTGGACTTGATTCCCATACAAAGTAGC--ATCACTTTGGAGCTCACCTTTAACTCCTGGAAGCTGGCAGGGCCCCTGTGGGTACG-A-GAGACTGTGAGAGGAGCCAAGAAAGTATG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36215532 333 + 80974532 TTTTTCCTATCTCAATTCAGAAGAATGAAGAATTGAAAGAGGAAAAG-TCTTGCCCAAGTAGAGA-CATTAGGAGAACA-GAAATAAAAGTGAGGGCTTCC-TATTCCCATTGGAGATGCTGCTGAGTATAGTCATGATTGACCAGCACTCCAAAAGAGAAATCGTGAAAGGAGAGGGCATGCCACTTAACTCAGCTGATCAGCATAGAAG---TTAGCAGTGTGGCTGAGACCATGGACCCAATCCTTATGTAAGTTAGTGGGTTACTTTGGAGCTCATCTTTAA--GATGGAAGCT-GCAGG--------GGGCACATACTGGATTATATGGGAAGCCCTGACATGAAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e rheMac3.chr1 212863515 0 + 229590362 I e papAnu2.chr1 203828660 0 + 220367699 I e macFas5.chr1 4069169 0 + 227556264 I e panTro4.chr1 224755242 2974 + 228333871 M a score=141580.000000 s hg38.chr1_KI270759v1_alt 16254 171 + 425601 TTGAGATcttggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatacaccatggaatactatgcagccatagaaaagaatgagttcatgttctttgcagggacatggatgaagctggaaaccatcattctcaacaaactaacac----------------aggaa s ponAbe2.chr1 226119886 171 - 229942017 TTGAGATcttggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaagaatgagttcatgttctttgcaggaacatggatgaagctggaaaacatcattcacaacaaactaacac----------------aggaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140012334 187 - 143122389 TTGAGATcttggaaccaacccaaatgcccatcaatgagagattggataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaagaatgagttcatgttctttgcagggacgtggatgaagctggaaaccatcattctcaacaaactaacacaggaacaaactaacataggaa i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82339143 171 + 85787240 TTGAGATcttggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatacaccatggaatactatgcagccgtaaaaaagagtgagctcatattcctttcagggacatgaatgaagctggaaaccatcattctcaacaaactaacac----------------aggaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14006446 171 - 49578535 TTGGGATctcagaactaacccaaatgcccatcaatgatagactgggtaaagaaaaggtggcacatatacaccatggaatactatgcggccatgaaaaaggatgagttcatgtcctttgcagggacatggatgaagctagaaaccatcatgctcagcaaactgacac----------------aagaa i calJac3.chr19 C 0 I 12 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36215865 0 + 80974532 C e rheMac3.chr1 212863515 0 + 229590362 I e papAnu2.chr1 203828660 0 + 220367699 I e macFas5.chr1 4069169 0 + 227556264 I e panTro4.chr1 224755242 2974 + 228333871 M a score=19284.000000 s hg38.chr1_KI270759v1_alt 16425 40 + 425601 caaaaaaaccaaacaccgcatgttctcgctcataagtagg s ponAbe2.chr1 226120057 40 - 229942017 caaaaaaaccaaacaccacatgttctcgctcataagtggg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140012521 40 - 143122389 caaaaaaaccaaacaccgcatgttctcgctcataagtggg i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82339314 39 + 85787240 c-aaaaaaccaaacattgcatgttctcactcataagtggg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36215865 0 + 80974532 C e calJac3.chr19 14006617 12 - 49578535 I e rheMac3.chr1 212863515 0 + 229590362 I e papAnu2.chr1 203828660 0 + 220367699 I e macFas5.chr1 4069169 0 + 227556264 I e panTro4.chr1 224755242 2974 + 228333871 M a score=8754.000000 s hg38.chr1_KI270759v1_alt 16465 7 + 425601 agttgaa s ponAbe2.chr1 226120097 7 - 229942017 agttgaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140012561 7 - 143122389 agttgaa i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223488002 7 - 227556264 agctgaa i macFas5.chr1 I 906 C 0 s papAnu2.chr1 16539946 7 - 220367699 agctgaa i papAnu2.chr1 I 906 C 0 s chlSab2.chr25 82339353 7 + 85787240 agctgaa i chlSab2.chr25 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36215865 0 + 80974532 C e calJac3.chr19 14006617 12 - 49578535 I e rheMac3.chr1 212863515 0 + 229590362 I e panTro4.chr1 224755242 2974 + 228333871 M a score=94721.000000 s hg38.chr1_KI270759v1_alt 16472 52 + 425601 caatgagaacacatggacacagggaggagaacatcacacaccggggcctgtg s ponAbe2.chr1 226120104 52 - 229942017 caatgagaacacatggacacagggaggagaacatcacacactggggctggtg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140012568 52 - 143122389 caatgagaacacgtggacacaggcaggagaacatcacacaccagggcctgtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16727761 52 - 229590362 caatgagaacacatggacacagggaggggaccatcacacacgagggcctgtg i rheMac3.chr1 I 913 C 0 s macFas5.chr1 223488009 52 - 227556264 caatgagaacacatggacacagggaggggaacatcacacaccagggcctgtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16539953 52 - 220367699 caatgagaacacatggacacagggaggggaacatcacacaccagggcctgtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82339360 52 + 85787240 caatgagaacacatggacacagggaggggaacatcacacaccagggcctgtg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36215865 0 + 80974532 C e calJac3.chr19 14006617 12 - 49578535 I e panTro4.chr1 224755242 2974 + 228333871 M a score=473537.000000 s hg38.chr1_KI270759v1_alt 16524 208 + 425601 ggggatgggggataaggggagggagagcattaggacaaatacctaatgcatgcggggcttaaaacctagatgacgggttgataggtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcatgttctgcacatgtatctgagaacttacagtataataaataaataaaTAAAAATCACACACAAAAAGGAAAGTACA s ponAbe2.chr1 226120156 208 - 229942017 ggggatgggggataaggggagggagagcattaggacaaatacctaatgcatgcggggcttaaaacctagatgatgggttgatgggtgcagcaaaccaccgtggcacatgtatacctatgtaacaaacctgcacgttctgcacatgcatctgagaacttacactacaataaatcaataaataaaaaTCACACACAAAAAGGAAAGTACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140012620 208 - 143122389 ggggatgggggacaaggggagggagaacattaggacaaatacctaaggcatgcagggcttaaaacctagatgatgggttgataggtgcagcaaaccaccacggcacatgtatacctatgtaacaaacctgcacgttctgcacacgtatctgagaacttacagtataataaatcaataaataaaaaTCACACACAAAAAGGAAAGTACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16727813 208 - 229590362 ggggatgggggacaagggtagggagagcattaggacaaatacctaatgcatacagagcttaaaacctagacgacgggtcgataggtgcaggaaaccaccatggcacatgtatacctatgtaacaaacctgcacgttctgcacatgtatctgagaacttacagtataataaatcaataaataaaaaTCACACACAAAAAGGAAAGTACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223488061 208 - 227556264 ggggatgggggacaaggggagggagagcattaggacaaatacctaatgcatacagagcttaaaacctagatgacgggtcgataggtgcaggaaaccaccatggcacatgtatacctatgtaacaaacctgcacgttctgcacatgtatctgagaacttacagtgtaataaatcaataaataaaaaTCACACACAAAAAGGAAAGTACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16540005 208 - 220367699 ggggatgggggacaaggggagggagagcatcaggacaaatacctaatgcatacagagcttaaaacctagatgacgggtggataggtgcaggaaaccaccatggcacatgtgtacctatgtaacaaacctgcatgttctgcacatgtatctgagaacttacagtataataaatcaataaataaaaatcacacacaaaaaggaaagtACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82339412 208 + 85787240 ggggatgggggacaaggggagggagagcattaggacaaatacctaatgcatatagagtttaaaacctagatgacgggtcgataggtgcaggaaaccgccatggcacttgtatacctacgtaacaaacctgcacgttctgcacgtgtatctgagaacttacagtataataaatcaataaataaaaaTCACACACAAAAAGGAAAGTACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14006629 199 - 49578535 ggggttgggggattaggggagggagaaccttcggagaaatacctaatgcatgcatggcttaaaacttaggtaacgggttgatgggtgctgcaagccaccatggcacgtgtatacctgtgtaacaaaccagcatgttctgcacatgtatcccacaactt------taataaatcaat---caaaaaTCACACAGAAAAAGGAAAGTACC i calJac3.chr19 I 12 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36215865 0 + 80974532 C e panTro4.chr1 224755242 2974 + 228333871 M a score=201232.000000 s hg38.chr1_KI270759v1_alt 16732 75 + 425601 TTTAGATCTCATCTCCCTCTCACCCCAAATCCAAGAACAGAACAACTCAGACACATGTCCTACAG----ATC-AGCACAC s ponAbe2.chr1 226120364 75 - 229942017 TTTAGATCTCATCTCCCTCTCACCCCGAATCCAAGAACAGAACAACTCAGACACATGTCCTACAG----ATC-AGCACAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140012828 75 - 143122389 TTTAGATCTCATCTCCCTCTCACCCCAAATCCAGGAATAGAACAACTCAGACACATGTCCTACAG----ATC-AGCACAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16728021 75 - 229590362 TTTAGATCTCATCTCTCTCTCACCCCAAATCCAGGAATAGAACAACTCAGACACATGTCCTACAG----ATC-AGCACAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223488269 75 - 227556264 TTTAGATCTCATCTCTCTCTCACCCCAAATCCAGGAATAGAACAACTCAGACACATGTCCTACAG----ATC-AGCACAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16540213 75 - 220367699 TTTAGATCTCATCTCTCTCTCACCCCAAATCCAGGAATAGAACAACTCAGACACATGTCCTACAG----ATC-AGCACAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82339620 71 + 85787240 TTTAGATCTCA----TCTCTCACCCCAAATCCAGGAATAGAACAACTCAGACACTTGTCCTACAG----ATC-AGCACAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14006828 75 - 49578535 TTTAGATCTCCTCTCCCTTTCACCCCAAATCCTGGAATAGAACAGCTCAGACACATGTCCTATAG----ATC-AGCAGAC i calJac3.chr19 C 0 I 310 s canFam3.chr7 36215865 80 + 80974532 TTTATCTCTTATCTCTCCTTTACCCCAAAGCCAGGAAGAAAGCAAGTCAAACACACCTACCATAGGCATATCAAACACAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e panTro4.chr1 224755242 2974 + 228333871 M a score=296543.000000 s hg38.chr1_KI270759v1_alt 16807 116 + 425601 -AATTTTTTTGT----GATTGAAGAA-ACGAATACTAACATTGGTTGATGGAAGAGACAGTACTCTAAAGTCAGCATGATAATGGACAGAAGAACAAATGATGCATCTAGTAACTGATGTTT s ponAbe2.chr1 226120439 116 - 229942017 -AATTTTTTTGG----GATTGAAGAA-ATGAATATTAACATTGGTTGATGGAAGAGACAGTACTCTGAAGTCAGCATTATAGTGGACAGAAGAACAAATGATGCATCTAGTAACTGACATTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140012903 115 - 143122389 -AATTTTTTTGT----GATC-AAAAA-ATGAATACTAACATTGGTTGATGGAAGAGACAGTACTCTAAAGTCAGCATTATAATGGACAGAAGAACAAATGATGCATCTAGTAACTGATGTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16728096 116 - 229590362 -AATGTTTTTGT----GACTGAAGAA-ATGAATACTAACATTGGTTGATAGAAGAGACAGTACTCTAAAGTCAGCATTATAATGGACAGAAGAACAAATAATGTGTCTAGTAACTGATGTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223488344 116 - 227556264 -AATGTTTTTGT----GACTGAAGAA-ATGAATACTAACATTGGTTGATAGAAGAGACAGTACTCTAAAGTCAGCATTATAATGGACAGAAGAACAAATAATGTGTCTAGTAACTGATGTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16540288 116 - 220367699 -AATGTTTTTGT----GACTGAAGAA-ATGAATACCAACATTGGTTGATAGAAGAGACAGTACTCTAAAGTCAGCATTATAATGGACAGAAGAACAAATAATGTGTCTAGTAACTGATGTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82339691 116 + 85787240 -AGTGTTTTTGT----GATTGAAGAA-ATGAATACTAACATTGGTTGATGGAAGAGATAGTACTCTAAAGTCAGCATTATAATGGACAGAAGAACAAATAATGTGTCTAGTAACTGATGTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14007213 118 - 49578535 -aaTTTTTGTGTGTGCGATTGAAGAA-ATGAATACTAACATTGGTTGGCAGAAGGGACTGTACTCT--AGTCAGCACTATAATGGACAGGAGAACGTATAATGCATCTAGTAACTGATGGTT i calJac3.chr19 I 310 C 0 s canFam3.chr7 36215945 117 + 80974532 GACTTTTTTTTT----GCTTGAAGGATGTGAATACTAGCATTGGTTGAAGGAAAAGAATACATTCCAAAATCATT-TTATAGTGGATAGAGGAACAACAAATGCATCTAGTAACTTAttttt i canFam3.chr7 C 0 I 142 e mm10.chr1 178643509 462 + 195471971 T e panTro4.chr1 224755242 2974 + 228333871 M a score=61604.000000 s hg38.chr1_KI270759v1_alt 16923 36 + 425601 AAC------------AACTGATT------------------------------------------ACCTGTTTGTATGGCATATTTAAAC s ponAbe2.chr1 226120555 36 - 229942017 AAC------------AACTGATT------------------------------------------ACCTGTTTGTATGGCGTATTTAAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140013018 36 - 143122389 AAC------------AGCTGCTT------------------------------------------ACCTGTTTGTATGGCGTATTTAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16728212 36 - 229590362 AAC------------AACGGATT------------------------------------------ACCTGTTTGTATGGCATATTTAAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223488460 36 - 227556264 AAC------------AACGGATT------------------------------------------ACCTGTTTGTATGGCATATTTAAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16540404 36 - 220367699 AAC------------AACTGATT------------------------------------------ACCTGTTTGTATGGTATATTTAAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82339807 36 + 85787240 AAC------------AATGGATT------------------------------------------ACCTGTTTGTATGGTATATTTAAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14007331 34 - 49578535 AAC------------CACTGA--------------------------------------------AGCCATTTATATGGCACATTTAAAA i calJac3.chr19 C 0 I 317 s canFam3.chr7 36216204 88 + 80974532 aactaagagacacttaactgactgaaccacccaggtgtccTGCATCTAGTAACTCACACATTTGCACACATTTGTATTACATACTTAT-- i canFam3.chr7 I 142 C 0 e mm10.chr1 178643509 462 + 195471971 T e panTro4.chr1 224755242 2974 + 228333871 M a score=2587493.000000 s hg38.chr1_KI270759v1_alt 16959 1044 + 425601 ATTATTGT-GTTTTCTGCTGTTTGGGTAGTGGTTGTTTATAATTATTAAAGATGCCCCGAGTGACAAAGAGACGAAGGATCATGAACATCTTAAAACACTTCTTGCTTTTTAACAAGGGCAGAGCA-AAGTTGTTAAAAAGGTAACCGAGGGTCAGATAACCAATGATTCATTGATGATGAATGCTCATTCTTCTAGTGCCAATGTGGTAAAATGTGGATGTTTTTAACCTTGTAAGTTAGGTGGCAGCATAGTCTAGTAGAAAACACCTCTAGCTCATGGATGAACGTTTCTCCAATTTGCTCCCAAGTCTCTTATTGATACTATATTTGGGTGACCCTGGGCA---------------------------------------------------AGTCCTATTGATAGTTGGCTTTGACTTAGGACAAATGAGGTTACACAGACTGAGAGTTTTG---TGTTGGACTTCAAGT---ACGCTTCTAGACTAAAAGCATTATGCCATTAATATTTATGTTATATAGCTTGTATATAAGTATCTCTATTCCTATTATCTTATTAATGTTCACATGTATGGATGTGTATACACGCATGGATTTGTGTAGATATGTGTGGTTGTGACGT-----------ATGTAT----------------------------TTTGTGTCttacagttttgcaaagctcttttgcagacattacctcatttgatc--tttcaacagtctctcagaa-gggggatgtccttgctttcattttataaatgtggttgagagaggttaTGGTTCCTGAAACTTGATACAATTACCAAGTTTCTGAAATATAGGAAAAATAACTTCATTGTAGACAAAGGTCACAATTTCAAGAGGCTTTGTAACGAAATTATGAACAAGTTTGGAAAAACTGCAAGAAATTCATTGAACAAAA-TTAAGAAGATCAGCCTTTTGAGAAAGGTCTCTCTTGATGG--CAAGACCGAGCAGC-ATCTTTCACTGAGCCACAGATTTGTATGGCGGATTGGATTTCTGGGGAAGGTTCTCCTCAGAACAGTGCCCTTCAGTCCACCGGAAAGTGCCACTCCAATTT-TT---------------------------------------------------AGTT--------------------------------------------------------------AAGAAAGGCTCTGAAAAGACCCACTCTCAAAGGTA-CCACCTGTTC s ponAbe2.chr1 226120591 1046 - 229942017 ATTAGTGT-ATTTTCTGCTGTTTGGGTAGTGGTTGTTTATAATTATTAAAGATGCCCAGAGTGACAAAGAGATGAAGGATCATAAACATCTTAAAACACTTTGTGCTTTTTAACAAGGGCAGAGTA-AGCTTGTTAAAAAGATAACCGAGGATCAGATAACCAATGATTCATTGGTGATGAATGCTCATTCTTCTAGTGCCAATGTGATAAAATGTGGGTGTTTTTAACCTTGTAAGTTAGGTGgcagcatagtctagtagaaaacagctctagctcatggatcaacgtttctccaatttgctcccaagtctgttattgatactatatttgggtgaccccgggca---------------------------------------------------agtcTTATTGATAGTTGGCTTTGACTGAGGACAGATGAGGTTATACAGACTGAGAGTTTTG---TGTTGGGCTTCAGGT---ACGCTTCCAGACTAAAAGCATTATGCCATTAATATTTATGTTATATAGCTTGTATGTAAGTATCTCTATTCCTATTATCTTATTAATGTTCACATGTATGGATGTGTATACACGTGTGGATTTGTGTAGATATGTGTGGTTGTGacat-----------atgtat----------------------------tttgtgtcttacagttttgcaaagctcttttgcagacattacctcatttgatc--tttcaacagtctctaagaa-gggggatgttcttgctttcattttataaatgtggttgagagaggttaTGGTTCCTGAAACTTGATACAATTACCAAGTTTCTGAAATATAGGAAAAATAACTTCATTGTAGATAAAGGTCACGATTTCAAGAGGCTTTGTAACCAAATTGTGAACAAGTTTGGAAAAACTGCAAGAAATTCATTGAACAAAA-TTAAGAAGATCAGCCTTTTGAGAAAGGTCTCTCTTGATGG--AAAGACCGAGCAGC-ATCCTTCACTGAGCCACAGATTTGTATGTCGGATTGGATTTCTGGGGAAGGTTCTCCTTAGAACAGTGCCCTTCAGTCCACCGGAAAGTGCCACTCCAATTTGTT---------------------------------------------------AGTT--------------------------------------------------------------AAGAAAGGCTCTGAAAAGACCCACTCTCAAAGGTACCCACCTGTTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140013054 1039 - 143122389 GTTAGTGT-GTTTTCTGCTGTTTGGGTAGTGGTTGTTTATAATTATTAAAGATGCCCGGAGTGACAAAGAGACGAAGTGT--------TCTTAAAACACTTCTTGCTTTTTAACAAGGGCAGAGTATACCTTGTTAAAAAGATAACCGAGGATCAGATAACCAGTGATTCACTGATGATGAATGCTCATTCTTCTAGTGCCAATGTGATAAAATGTGGGTGTTTTTAACCTTGTAAGTTAGGTGGCAGCATAGTCTAGTAGAAAACACCTCTAGCTCATGGATCAACGTTTCTCCAATTTGCTCCCAAGTCTCTTATTGACACTATATTTGGGTGACCCTGGGCA---------------------------------------------------AGTCGTGTTGATAGTTGGCTTTGCCTTAGGACAAATGAGGTTATACAGACTGAGAGTTTTG---TGTTGGACTTCAAGT---ATGCTTCGGGACTAAAAGCATTATGCCATTAATATTTATGTTATATAGTTTGTATATAAATATCTCTATTCCTATTATCTTATTAACGTTTACATGTATGGATGTGTATACACGTGTGGATTTGTGTAGATATGTGTGGTTGTGACAT-----------ATGTAT----------------------------TTTGTGCCTTACGGTTTTGCAAAGCTCTGTTGCAGACGTTACCTCACTTGATC--TTTCAACAGTCTCTCAGAA-GGGGGATGTTCTTGCTTTCATTTTATAAATGTGGTTGAGAGAGGTGATGGTTCCTGAAACTTGATACAATTACCGAGTTTCTGAAATACAGGAAAAATAACTTCATTGCAGACAAAGGTCACAATTTCAAGAGCCTTTGCAACCAAATTGTGAACAAGTTTGGAAAAGCTGCAAGAAATTCATTGAACAAAATTTAAGAAGGTCAACCTTTTGAGAAAGGTCTCTCTTGATGG--AAAGACTGACCAGC-ATCTTTCACTGAGCCACAGATTTGTATGTCGGATTGGATTTCTGGGGAAGGTTCTCCTCAGAACAGTGCCCTTCAGTCCACCAGAAAGTGCTGCTCCAATTTGTT---------------------------------------------------AGTT--------------------------------------------------------------AAGAAAGGCTCCAAAAAGACCCACTCTCAAAGGTA-CCACCTGTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16728248 1044 - 229590362 GTTATTGT-GTTTTCTGCTGTTTGGGTAGTGGTTGTTTATAATTATTAAAGATGCCTGGAGTGACAAAGAGACGAAGGACCATAAACATCTTAAAACACTTCTTGCTTTTTAACAAGGGCAGAGTATACCTTGTTAAAAAGATAACCAAGGATCAGATAACCGATGATTCATTGATGACGAATGCTCATTCTTTTAGTGCCAATGTAGTCAAATGTGAGTGTTTTTAACCTTGTAAGTTAGGTGGCAGCATAGTCTAGTAGAAAATAACTCTAGCTCGTGGATCAACGTTTCTCCAATTTGCTCCCAAGTCTCTTATTGATACTATATTTGGGTGACCCTGGGCA---------------------------------------------------AGTCATACTGATTCTTGGCTTTGACTAAGGACAAATGAGGTTATACATTCTGAGAGTTTTG---TATTGGACTTCAAGT---AGTCTTCTAGACT-GAAGCATTGTGCCATTAATATTTATGTTATATAGCTTATATATAAAGATCTCTATTTCTATTATCTTATTAATGTTCACATGTATGGATGTATATACACGTGTGGATTTGTGTAGATATGTGTGGTTGGGACGT-----------ATGtat----------------------------tttgtgtcttacagttttgtaaagcttttttgcagacattacctcatttgatc--tttcaacaatctctcagaa--ggggatgttcttgctttcattgtataaatgtggTTGAGAGAATTTATGGCTCCTGAAACTTGATACAATTACCAAGTTTCCGAAATATAGGAAAAATAACGTCATTGTAGACAACGGTCACAGTTTCAAGAGCCTTTGTAACCAAATTGTGAACATGTTTGGAAAAGCTGCTAGAAATTCATTGAACAAAA-TTAAGAAGATCAGCCTTTTGAGAAAGGTCTCTCTTGGTGG--AAAGACTGAGCAGC-ATCTTTTACTGAGCCGCGGATTTGTATATTGGATTGGATTTCCGGGGAAGGTTCTCCTCAGAACAGTGCCCTTCCATCCACCGGAAAGTGCTACTCCAATTTGTT---------------------------------------------------AGTT--------------------------------------------------------------AAGAAAGGCTCTAAAAAGACCCACTCTCAAAGGTA-CCACCTGTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223488496 1044 - 227556264 GTTATTGT-GTTTTCTGCTGTTTGGGTAGTGGTTGTTTATAATTATTAAAGATGCCTGGAGTGACAAAGAGACGAAGGACCATAAACATCTTAAAACACTTCTTGCTTTTTAACAAGGGCAGAGTATACCTTGTTAAAAAGATAACCAAGGATCAGATAACCGATGATTCATTGATGACGAATGCTCATTCTTTTAGTGCCAATGTAGTCAAATGTGAGTGTTTTTAACCTTGTAAGTTAGGTGGCAGCATAGTCTAGTAGAAAATAACTCTAGCTCGTGGATCAACGTTTCTCCAATTTGCTCCCAAGTCTCTTATTGATACTATATTTGGGTGACCCTGGGCA---------------------------------------------------AGTCATACTGATTCTTGGCTTTGACTAAGGACAAATGAGATTATACATTCTGAGAGTTTTG---TATTGGACTTTAAGT---AGTCTTCTAGACT-GAAGCATTGTGCCATTAATATTTATGTTATATAGCTTATATATAAAGATCTCTATTTCTATTATCTTATTAATGTTCACATGTATGGATGTATATACACGTGTGGATTTGTGTAGATATGTGTGGTTGGGACGT-----------ATGTAT----------------------------TTTGTGTCttacagttttgtaaagcttttttgcagacattacctcatttgatc--tttcaacaatctctcagaa--ggggatgttcttgctttcattgtataaatgtggTTGAGAGAATTTATGGCTCCTGAAACTTGATACAATTACCAAGTTTCCGAAATATAGGAAAAATAACGTCATTGTAGACAACGGTCACAATTTCAAGAGCCTTTGTAACCAAATTGTGAACATGTTTGGAAAAGCTGCTAGAAATTCATTGAACAAAA-TTAAGAAGATCAGCCTTTTGAGAAAGGTCTCTCTTGGTGG--AAAGACTGAGCAGC-ATCTTTTACTGAGCCGCGGATTTGTATGTTGGATTGGATTTCCGGGGAAGGTTCTCCTCAGAACAGTGCCCTTCCATCCACCGGAAAGTGCTGCTCCAATTTGTT---------------------------------------------------AGTT--------------------------------------------------------------AAGAAAGGCTCTAAAAAGACCTACTCTCAAAGGTA-CCACCTGTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16540440 1042 - 220367699 GTTATTGT-GTTTTCTGCTGTTTGGGTAGTGgttgtttataattattaaagaTGCCTGGAGTGACAAAGAGACGAAGGACCATAAACATCTTAAAACACTTCTTGCTTTTTAACAAGGGCAGAGTATACCTTGTTAAAAAGATAACCAAGGATCAGATAACCAATGATTCATTGATGACGAATGCTCATTCTTTTAGTGCCAATGTAGTAAAATGTGAGTGTTTTTAACCTCGTAAGTTAGGTGGCAGCATAGTCTAGTAGAAAATAACTCTAGCTCGTGGATCAACGTTTCTCCAATTTGCTCCCAAGTCTCTTATTGATACTATATttgggtgaccctgggca---------------------------------------------------agtcataTTGATTCTTGGCTTTGACTAAGGACGAATGAGGTTATACATTCTGAGAGTTTTG---TATTGGACTTCAAGT---AGTCTTCTAGACT-GAAGCATTGTGCCattaatatttatgttatatagcttatatataaatatctc--tttctattatcttattaATGTTCACAtgtatggatatatatacacgtgtggaTTTGTGTAGATATGTGTGGTTGGGACAT-----------ATGTAT----------------------------TTTGTGTCTTACAGTTTTGCAAAGCTTTTTTGCAGACATTACCTCATTTGATC--TTTCAACAATCTCTCAGAA--GGGGTTGTTCTTGCTTTCATTGTATAAATGTGGTTGAGAGAATTTATGGCTCCTGAAACTTGATACAATTACCAAGTTTccaaaatacaggaaaaataacTTCATTGTAGACAATGGTCACAATTTCAAGAGCCTTTGTAACCAAATTGTGAACATGTTTGGAAAAGCTGCAAGAAATTCACTGAACAAAA-TTAAGAAGATCAGCCTGTTGAGAAAGGTCTCTCTTGGTGG--AAAGACTGAGCAGC-ATCTTTTACTGAGCCGCGGATTTGTATGTTGGATTGGATTTCCGGGGAAGGTTCTCCTCAGAACAGTGCCCTTCCATCTACCGGAAAGTGCTGCTCCAATTTGTT---------------------------------------------------AGTT--------------------------------------------------------------AAGAAAGGCTCTAAAAAGAGCCACTCTCAAAGGTA-CCACCTGTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82339843 1044 + 85787240 GTTGTTAT-GTTTTCTGCTGTTTGGGTAGTGGTTGTTTATAATTATTAAAGATGCCTGGAGTGACAAAGAGACGAAGGACCATTAACATCTTAAAACACTTCTTGCTTTTTAACAAGGGCAGAGTATATCTTGTTAAAAAGATAACCAAGGATCAGATAACCAATGATTCATTGATGACGATTGCTCATTCTTTTAGTGCCAATGTAGTAAAATGTGAGTGTTTTTAACCTTGTAAGTTAGGTGGCAGCATAGTCTAGTAGAAAATAACTCTAGCTCATGGATCAACGTTTCTCCAATTTGCTCCCAAGTCTCTTATTGATACTATATTTGGGTGACCCTGGGCA---------------------------------------------------AGTCATACTGATTCTTGGCTTTGACTAAGGACAAATGAGGTTATACATTCTGAGAGTTTTG---TATTGGACTTCAAGT---AGTCTTCTAGACT-GAAGCATTGTGCCATTAatatttatgttatatagcttatatataaatatctctatttctattatcttatTAATGTTCACATGTATGGATGTATATACACATGTGGATTTGTGTAGATATGTGTGGTTGGGacat-----------atgtat----------------------------tttgtgtcttacagttttgcaaagcttttttgcagacattacctcatttgatc--tttcaacaatctctcagaa--ggggatgttcttgctttcattgtataaatgtggTTGAGAGAATTTATGGCTCCTGAAACTTGATACAATTCCCAAGTTTCCAAAATACAGGAAAAATAACTTCATTGTAGACAACGGTCACAATTTCAAGAGCCTTTGTAACCAAATTGTGAACATGTTTGGAAAAGCTGCAAGAAATTCACTGAACAAAA-TTAAGAAGATCAGCCTTTTGAGAAAGGTCTCTCTCGGTGG--AAAGACTGAGCAGC-ATCTTTTACTGAGCCGCACATTTGTATGTCGGATTGGATTTCCGGGGAAGGTTCTCCTCAGGACAGTGCCCTTCAGTCCACTGGAAAGTGCTGCTCCAATTTGTT---------------------------------------------------AGTT--------------------------------------------------------------AAGAAAGGCACTAAAAAGACCCACTCTTAAAGGTA-CCACCTGTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14007682 1058 - 49578535 aTTATTGT-GTTTTCTGTTGCTTGCGTAGTGGTTATTTATAATTATTAAA--------GAGTGACAAAAAATCGAAGGATCATAAGCATCTGAAAACCCTTCTCGCTTTTTAACA-------AGTATCCCATGTTAAAAAGATAACCGAGGATCAGATAATGAATGATTCATTGATGGTGAATACTTGGTCTTCCAGTGCGGATGGAGTAAAACGTGGGTGGTGGTAACCTTGTGAGTTAGGTggcagcacagtctagtagaaagcggctctggctcatgaatcagcgtttctccactttgctcccaagtctcttgctgatactacatttgggtgaccctgggtaagtcccttgatttcttttcagctcccttgtcct-gttggtaacacgtggacagtcatattgatacttagctgtgacttaggatgaatgacgttatacatatTGAGAATTTTG---TGTTGGACTTCAGGT---GCGCTTCTAGACTAAAAGCATTATGCCATTAATATTTCTGTTCTATAGCTTGTATATAAATATCTC------CATTACCTTA--AATGTTCACACGTATATGTGTGTA----------GATGCCTGTGGATGTGTGTGGTTGTGACG------------GTGTAT----------------------------TTTGTGTCtcacaggtttacaaagctcttttgcagacatcacctcatctgatccttttgggcagcctcc--gaa-gggggatattcttgccttcattttctaagtgtggttgagagaggttagggttcctgaaacgtgatacaattaccaagtTTCTGAAATGCAGGAAAAAGAACTTTATAGTAGACGAAGGTCACAATGTCCACAGCCTTTGTAACCAAATTGTGAGCATGTTTGGAAAAGCTGCAGGAAATTCACTGAACAAAA-TTAAGA---TCAGCCTTTTGAGAAAGGTCTCCCTTGCTGG---AAGACCGAGCAGT-GTCTTTTACTGAGCCACACATTTGCATGTCGGATTGGATTTCTAAGGAAGGTTCTCTTCAGAACAGTGCCCTTCAATCCACCTGAAAATGCTGCTTCAATTTGCT---------------------------------------------------AGTT--------------------------------------------------------------AAGAAAGGCTCTAAAAAGACCCCCTCTCAAAGGTA-CCATCTGTTC i calJac3.chr19 I 317 C 0 s canFam3.chr7 36216292 1212 + 80974532 -TTATTGTGGTTTTCTGTTGCTTGG---ATGGTCATTTACAATTATTAGAGATGCCAAGAGCCACAAAAAGATGAAGGAAAATAAAAATCGAATAAACCTTCATGCTTTTTAACAAGGACAGAGT--CCCTTATTAAAAGGCTAACCAAG---------------GATTCACTGATGACTAATGTTTGCTTTTCTTGTGCTTGTGTAAT-AAATCTGGGTGTTTTTAACCTTGTCAGTTAGGTGGCAGCAAAGTCTAGTAGAAATCAGCTCTAGCTTATGGGTCAG------------TTTCTCCCAAGTCACTTATTGTTATTGTATTCGAgtgaccctgggcc-agtcactggatttcttttgatctccttcatcatatctgtaaaatgggagtgatcatagtggcacttgcccctgatgcagggcaactgaggtgatatatactgagagttttgagctgtcaggttacagctgtcaggtgtCGAGATCACAAGCATCCTATCATTAATATTTCTTTTAGTTGTCACatatgtacatatatatatgtgtgt----------atgtatatatgtgtgtgtatatatatgtatatatatatTTTGGGATATATGTGTTGTTAATATTCATTACATACATGTATATATATCCACACATATGccttacctgtgtgtgtgcttggcagtttcacaaagttcttccatagg-atcaccccatttgaccc-tcccagcaatcTCTCAGAAGGGGGAATGTTATTGCATTTGTTTTGTAAATATGGTTGAGAGAGTTTACAGTTCCCGAAACTTGATACAATTACCATGATTTTGAAATATGGAAAAAAGAACTTCATTGTGGACAAAAGTCACCATTTCAAATGTTTTTGTAACCAAACTGTGAACAAGTTTGGAAAAGTTGCAAGACATTCATT-ACCAAAA-TCAAGGAGATCAGCCTTTTGAAAGAGGTCTCCCTTGATGGAGAAAGACCAAGCAGTGAACTATCAGTGAACCATAAATTTGCAGGTTGGATTTAATTTCCTAGGAAGGTTCTGTTCAGGATAGTG-TCTTCCATCAATCTGAAAATGCTACTTAGCTTTGTTCttaaccctctgactcttgatatcagctcaggtcttgatctcagggtcgtgagtttaagccctgtgttggacgccatgctgggcatggagcctacttaaaaaaaaaaaaaaaaaaAAAAAACAAGCTCT-AAAAGCCCCATTTTCTAAGGTA-TCACCTGTTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e panTro4.chr1 224755242 2974 + 228333871 M a score=266341.000000 s hg38.chr1_KI270759v1_alt 18003 137 + 425601 ATGTAGTCATTAATTTGTTAACTAATTAATCGACCCATCTATTTATTCGCttattcactcaaaagcatttaccaagctcctactgtgtgtcCTCAAGGA-CATCCAGCTGTACGGGAATAAACAGGGGAAGCATATGG s ponAbe2.chr1 226121637 137 - 229942017 ATGTAGTCATCGATTTGTTAAATAATTAATCGACCCATCTGTTTATTCacttattcactcaaaagcatttaccaagctcctactgtgtgtcTTCAAGGA-CATCCAGCTGTACGGGAATAAAGAGGGGAAGCATATGG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729292 137 - 229590362 ATGTAGTCATTAATGTGTTAAATAATTAATCGACCCATCTGTTTATTCGCtcattctctcaaaagcatttaccaagctcctactgtgtgtcCTCAAGGA-CATCCAGCTGTAGGGGAATAAAGAGGGGAAGCAGACGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223489540 137 - 227556264 ATGTAGTCATTAATGTGTTAAATAATTAATCGACCCATCTGTTTATTCGCtcattctctcaaaagcatttaccaagctcctactgtgtgtcCTCAAGGA-CATCCAGCTGTAGGGGAATAAAgaggggaagcagacgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16541482 137 - 220367699 ATGTAGTCATTAATGTGTTAAATAATTAATCGACCCATCTGTTTATTCGCTCATTCTCTCAAAAGCATTTACCAGGCTCCTACTGTGTGTCCTCAAGGA-CATCCAGCTGTAGGGGAATAAAGAGGGGAAGCAGACgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82340887 133 + 85787240 ATGTAGTCATTAATGTGTTAAATAATTAATCGACCCATCTG----TTCactcattctctcaaaagcatttaccaagctcctactgtgtgtcCTCAAGGA-GATCCAGCTGTAGGGGAATAAAGAGGGGAAGCAGACGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14008740 133 - 49578535 ATGCAGTCATCAGTGTGTTAAA----TAATCGACCCATCTGTTGATTTGCtcatccactcaaaagcatttacctagctcctcctgtgtgtcCTCAAGGA-CTTCCAGCTGTAGAGGACTAAAGAGGGGAAGCAGGTGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36217504 130 + 80974532 ATGCA---ATTAATTTTGTAATCAATCCATCCACCTATCTGTTTAATTATTCATCCCCTC-GAAGCATTTATTAAGCTCCTACTCTGTGCCCCCAAGGAGCATGCAGCTGCAGCGGAT----GAGGGGAGGCAGACAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=33868.000000 s hg38.chr1_KI270759v1_alt 18140 26 + 425601 TGGACTTGAAGGTGGAGTTGGTGTGG s ponAbe2.chr1 226121774 22 - 229942017 TGGACTTGGAGGTGGAGTTGAT---- i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729429 22 - 229590362 TGGAGTTGGAGGTGGAGTTGGT---- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223489677 26 - 227556264 tggagttggaggtggagttggtgtgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16541619 26 - 220367699 tggagttggaggtggagttggtgtgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82341020 22 + 85787240 TGGAGTTGGAGGTGGAGTTGGT---- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14008873 26 - 49578535 TGGAGCTGGAGGTGGAATTGCTGTGG i calJac3.chr19 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=0.000000 s hg38.chr1_KI270759v1_alt 18166 1 + 425601 A e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008899 0 - 49578535 C e rheMac3.chr1 16729451 0 - 229590362 C e chlSab2.chr25 82341042 0 + 85787240 C e papAnu2.chr1 16541645 0 - 220367699 C e macFas5.chr1 223489703 0 - 227556264 C e nomLeu3.chr5 140014093 0 - 143122389 C e ponAbe2.chr1 226121796 0 - 229942017 C e panTro4.chr1 224755242 2974 + 228333871 M a score=7902.000000 s hg38.chr1_KI270759v1_alt 18167 16 + 425601 CCCTGCCGTGGGTGGA s macFas5.chr1 223489703 16 - 227556264 tcctgccatgggtgga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16541645 16 - 220367699 tcctgccatgggtgga i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14008899 16 - 49578535 TCCTGCCATGGGTGGT i calJac3.chr19 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e rheMac3.chr1 16729451 0 - 229590362 C e chlSab2.chr25 82341042 0 + 85787240 C e nomLeu3.chr5 140014093 0 - 143122389 C e ponAbe2.chr1 226121796 0 - 229942017 C e panTro4.chr1 224755242 2974 + 228333871 M a score=1324.000000 s hg38.chr1_KI270759v1_alt 18183 15 + 425601 TGGAGGTGGAGGTGG s calJac3.chr19 14008915 15 - 49578535 TGGAGGTGGAGGTAG i calJac3.chr19 C 0 I 289 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e rheMac3.chr1 16729451 0 - 229590362 C e chlSab2.chr25 82341042 0 + 85787240 C e papAnu2.chr1 16541661 0 - 220367699 C e macFas5.chr1 223489719 0 - 227556264 C e nomLeu3.chr5 140014093 0 - 143122389 C e ponAbe2.chr1 226121796 0 - 229942017 C e panTro4.chr1 224755242 2974 + 228333871 M a score=62473.000000 s hg38.chr1_KI270759v1_alt 18198 91 + 425601 GGTGGTCCTGCCATGGGTGGA--TGGAGGTGGAG-GTGGGGTAGACCCTTATGTGGGTGGTGGGAGGTGGAGGTGGGGTGGGCCCTGCCATGGG s ponAbe2.chr1 226121796 90 - 229942017 -GTGATCCTGCCATGGGCGGA--TGGAGGTGGAG-GTGGGGTGGACCCTGATGTTGGTGGTTGGAGGTGGAGGTGGGGTGGGCCCTGCCATGGG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729451 90 - 229590362 -GTGGTCCTGCCATGGGTGGA--TGGAAGTGGAG-GTGGGGTGGACCCTGATGTGGGTGGTTGGAGGTGGAGGTGGGGTGGGCCCTGCCATGGG i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16541661 70 - 220367699 -----------------tggaagtggaggtggggtggg-------ccctgatgtgggtggttggaggtggaggtggggtgggccctgccatggg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82341042 90 + 85787240 -GTGGTCCTGCCATGGGTGGA--TGGAAGTGGAG-GTGGGGTGGACCCTGATGTGGGTGGTTGGAGGTGGAGGTGGGGTGGGCCCTGCCAGGGG i chlSab2.chr25 C 0 T 70 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008930 289 - 49578535 I e macFas5.chr1 223489719 0 - 227556264 C e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=22864.000000 s hg38.chr1_KI270759v1_alt 18289 41 + 425601 TGGTGAGAGGTAGAGTTGGTGTGGACTCTGCCAGGGGTGGT s ponAbe2.chr1 226121886 41 - 229942017 TGGTGAGAGGTAGAGTTGGTGTGGACCCTGCCAGGGGTGGT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729541 41 - 229590362 TGGTGAGAGGTAGAGTTGGTGTGGGCCCTGCCAGGGGTGGT i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16541731 41 - 220367699 tggtgagaggtagagttggtgtgggCCCTGCCAGGGGTGGT i papAnu2.chr1 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008930 289 - 49578535 I e chlSab2.chr25 82341132 70 + 85787240 T e macFas5.chr1 223489719 0 - 227556264 C e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=18757.000000 s hg38.chr1_KI270759v1_alt 18330 26 + 425601 TGGAGGTGGAGGTGGGGTGGACCCTG s ponAbe2.chr1 226121927 26 - 229942017 TGGAGATGGAGGTGGGGTGGACCGTG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729582 26 - 229590362 TGGAGGTGGAGGTGGGGTGGGCCCTG i rheMac3.chr1 C 0 T 111 s papAnu2.chr1 16541772 26 - 220367699 TGGAGGTGGAGTTGACATGGGTTCTG i papAnu2.chr1 C 0 T 153 s chlSab2.chr25 82341062 26 + 85787240 TGGAAGTGGAGGTGGGGTGGACCCTG i chlSab2.chr25 T 70 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008930 289 - 49578535 I e macFas5.chr1 223489719 0 - 227556264 C e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=18213.000000 s hg38.chr1_KI270759v1_alt 18356 32 + 425601 ATGTGGGTGGTTGGAGGTGGAGGTGGGGTGGG s ponAbe2.chr1 226121953 32 - 229942017 ATATGGGTGGTTGGAGGTGGAGGTGGGGTGGG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729497 32 - 229590362 ATGTGGGTGGTTGGAGGTGGAGGTGGGGTGGG i rheMac3.chr1 T 111 C 0 s chlSab2.chr25 82341088 32 + 85787240 ATGTGGGTGGTTGGAGGTGGAGGTGGGGTGGG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008930 289 - 49578535 I e papAnu2.chr1 16541798 153 - 220367699 T e macFas5.chr1 223489719 0 - 227556264 C e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=476.000000 s hg38.chr1_KI270759v1_alt 18388 1 + 425601 C s ponAbe2.chr1 226121985 1 - 229942017 C i ponAbe2.chr1 C 0 T 111 s rheMac3.chr1 16729529 1 - 229590362 C i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16541645 1 - 220367699 t i papAnu2.chr1 T 153 C 0 s chlSab2.chr25 82341120 1 + 85787240 C i chlSab2.chr25 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008930 289 - 49578535 I e macFas5.chr1 223489719 0 - 227556264 C e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=30577.000000 s hg38.chr1_KI270759v1_alt 18389 42 + 425601 CCTGCCATGGGTGGTGAGAGGTAGAGTTGGTGTGGACTCTGC s ponAbe2.chr1 226121875 42 - 229942017 CCTGCCATGGGTGGTGAGAGGTAGAGTTGGTGTGGACCCTGC i ponAbe2.chr1 T 111 C 0 s rheMac3.chr1 16729530 42 - 229590362 CCTGCCATGGGTGGTGAGAGGTAGAGTTGGTGTGGGCCCTGC i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16541646 42 - 220367699 cctgccatgggtggatggaagtggaggtggggtgggccctga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82341121 42 + 85787240 CCTGCCAGGGGTGGTTGGAGGTGGAGTTGATGTGGGTTCTGC i chlSab2.chr25 C 0 T 31 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008930 289 - 49578535 I e macFas5.chr1 223489719 0 - 227556264 C e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=345.000000 s hg38.chr1_KI270759v1_alt 18431 3 + 425601 CAG s ponAbe2.chr1 226121917 3 - 229942017 CAG i ponAbe2.chr1 C 0 I 687 s rheMac3.chr1 16729572 3 - 229590362 CAG i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16541688 3 - 220367699 tgt i papAnu2.chr1 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008930 289 - 49578535 I e chlSab2.chr25 82341163 31 + 85787240 T e macFas5.chr1 223489719 0 - 227556264 C e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=4092.000000 s hg38.chr1_KI270759v1_alt 18434 7 + 425601 GGGTGGT s ponAbe2.chr1 226122607 7 - 229942017 gggtggt i ponAbe2.chr1 I 687 C 0 s rheMac3.chr1 16729575 7 - 229590362 GGGTGGT i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16541691 7 - 220367699 gggtggt i papAnu2.chr1 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008930 289 - 49578535 I e chlSab2.chr25 82341163 31 + 85787240 T e macFas5.chr1 223489719 0 - 227556264 C e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=24051.000000 s hg38.chr1_KI270759v1_alt 18441 26 + 425601 TGGAGGTGGAGGTGGGGTGGACCCTG s ponAbe2.chr1 226122614 26 - 229942017 tggaggtggaggtggggtgggccctg i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729582 26 - 229590362 TGGAGGTGGAGGTGGGGTGGGCCCTG i rheMac3.chr1 C 0 T 111 s macFas5.chr1 223489719 26 - 227556264 tggaagtggaggtggggtggaccctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16541698 26 - 220367699 tggaggtggaggtggggtgggccctg i papAnu2.chr1 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008930 289 - 49578535 I e chlSab2.chr25 82341163 31 + 85787240 T e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=988.000000 s hg38.chr1_KI270759v1_alt 18467 3 + 425601 ATG s ponAbe2.chr1 226122640 3 - 229942017 atg i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729497 3 - 229590362 ATG i rheMac3.chr1 T 111 C 0 s macFas5.chr1 223489745 3 - 227556264 atg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16541724 3 - 220367699 cca i papAnu2.chr1 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e calJac3.chr19 14008930 289 - 49578535 I e chlSab2.chr25 82341163 31 + 85787240 T e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=40015.000000 s hg38.chr1_KI270759v1_alt 18470 34 + 425601 TGGGTGATTGGAGGTGGAGGTGGGGTGGGCTCTG s ponAbe2.chr1 226122643 34 - 229942017 tgggtggttggaggtggaggtggggtgggCTCTG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729500 34 - 229590362 TGGGTGGTTGGAGGTGGAGGTGGGGTGGGCCCTG i rheMac3.chr1 C 0 I 74 s macFas5.chr1 223489748 34 - 227556264 tgggtggttggaggtggaggtggggtgggccctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16541727 34 - 220367699 tgggtggtgagaggtagagttggtgtgggCCCTG i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14009219 33 - 49578535 tgggtgattggaggtgggggtgg-gTGGGCCCTG i calJac3.chr19 I 289 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e chlSab2.chr25 82341163 31 + 85787240 T e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=4485.000000 s hg38.chr1_KI270759v1_alt 18504 7 + 425601 CCATGCA s ponAbe2.chr1 226122677 7 - 229942017 CCATGCA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729608 7 - 229590362 CCAGGGG i rheMac3.chr1 I 74 C 0 s macFas5.chr1 223489782 7 - 227556264 ccagggg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16541761 7 - 220367699 CCAGGGG i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14009252 7 - 49578535 CCATTGG i calJac3.chr19 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e chlSab2.chr25 82341163 31 + 85787240 T e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=34186.000000 s hg38.chr1_KI270759v1_alt 18511 19 + 425601 TGGTTGGAGGTGGAGTTGA s ponAbe2.chr1 226122684 19 - 229942017 TGGCTGGAGGTGGAGTTGA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729615 19 - 229590362 CGGTTGAAGGTGGAGTTGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223489789 19 - 227556264 cggttggaggtggagttga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16541768 19 - 220367699 TGGTTGGAGGTGGAGTTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82341132 19 + 85787240 TGGTTGGAGGTGGAGTTGA i chlSab2.chr25 T 31 C 0 s calJac3.chr19 14009259 19 - 49578535 TGGTTGGAGGTGGAGATGA i calJac3.chr19 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36217634 0 + 80974532 C e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=722907.000000 s hg38.chr1_KI270759v1_alt 18530 380 + 425601 TGTGGGT-----TCTGCACAGCTTAGGCTGAGCAGGAAGTGTATTTTCAGACCTGGAATAGACTCCCTATGGTGGACAGAGTTGCTGGAAAA------AATATCAGAATATATTGTTTAGGACATCTCATCTTCAAGACATAGATTCCCCTTCTTATGGAATTTTGAGATGTCCTAGCTGGA-GGAAGAAGAATTCTTTCCATGGAAACAATAAACAGTCAAAATGTTTACTATGAAATTCAT-----------GGAAATG-CTCTGCCAGAGGCTCGGG-AATCTCTGCAGAGAACATTTTCTGTACTGCAGGATGACAGAGGCTGTCGAGAATAAAATGAAGCTGAGTGCTTGTGGTTGGGATTCCTTCTTTTTCCTCTTTTATTGTTTCTCCTTAGCTTTGT s ponAbe2.chr1 226122703 379 - 229942017 TGTGGGT-----TCTGCACAGTTTAGGCTGAGCAGGAAGTGTATTTTCAGACCTGCAATAGACTCCCTGTGGTGGACAGAGTTGCTGGAAAA------AAAATCAGAATATATTGTTTAGGACATCTCATCTTCAAGACATAGATTCCTCTTCTTATGGAATTTTGAGATGTCCTAGCTGGA-AGAAGAAGAACTCTTTCCATGGAAACAATAAACAGTCAAAATGTTTCATATGAAATTCAT-----------GGAAACG-CTCTGCCAGAGGCTGGGG-AATCTCTGCAGAGAACATTTTCTGTGCTGTAGGATGACAGAGGCTGTGGAGAATAAAATGAAGCTGAGTGCTTGTGGTTGGGATTCATTATTTTTCCTCTTTTA-TGTTTCTCCTTAGCTTTGT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16729634 381 - 229590362 CGTGGGT-----TCTGCACAGTTTAGGCTGAGCAGGAAGTATATTTTCAGACCTGGGATAGACTCCCTATGGTGGACAGAGTTGCTGAGAAA------AAAATCAGAATATATTGTTCAGGACATCTCATCTTCAAGACATAGGTTCCTCTTCTTATGGAATTTTGAGGTGTCTTAGCTGGA-GGAAGAAGAATTTTTTCCATGGAGACAATAAACAGTCACAATGTTTCATATGAAATTCAT-----------GGAAATGCCTCTGCCAGAGGCTTGGG-AATCTCTTCAGAGAACATTTTCTGTACTGCAGGATTACAGAGACTGTGGAGAAGAAAATGAAGCTGAGTGCTTGTGGTTGGGATTCCTTCTTTTTCCTCTTTTGTTATTTCTCCTTAGCTTTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223489808 381 - 227556264 cgtggGT-----TCTGCACAGTTTAGGCTGAGCAGGAAGTATATTTTCAGACCTGGGATAGACTCCCTATGGTGGACAGAGTTGCTGAGAAA------AAAATCAGAATATATTGTTCAGGACATCTCATCTTCAAGACATAGGTTCCTCTTCTTATGGAATTTTGAGGTGTCTTAGCTGGA-GGAAGAAGAATTCTTTCCATGGAGACAATAAACAGTCACAATGTTTCATATGAAATTCAT-----------GGAAATGCCTCTGCCAGAGGCTTGGG-AATCTCTTCAGAGAACATTTTCTGTACTGCAGGATTACAGAGACTGTGGAGAAGAAAATGAAGCTGAGTGCTTGTGGTTGGGATTCCTTCTTTTTCCTCTTTTGTTATTTCTCCTTAGCTTTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16541787 381 - 220367699 CATGGGT-----TCTGCACAGTTTAGGCTGAGCAGGAAGTATATTTTCAGACCTGGAATAGACTCCCTATGGTGGACAGAGttgctgagaaa------aaaatcagaatatattgTTTAGGACATCTCATCTTCAAGACATAGGTTCCTCTTCTTATGGAATTTTGAGGTGTCTTAGCTGGA-GGAAGAAGAATTCTTTCCATGGAGACAATAAACAGTCACAATGTTTCATATGAAATTCAT-----------GGAAATGCCTCTGCCAGAGGCTTGGG-AATCTCTTCAGAGAACATTTTCTGTACTGCAGGATTACAGAGACtgtggagaagaaaatgaagctgaGTGCTTGTGGTTgggattccttcttttttctcttttgttatttctCCTTAGCTTTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82341151 381 + 85787240 TGTGGGT-----TCTGCACAGTTTAGGCTGAGCAGGAAGTATATTCTCAGACCTGGAATAGACTCCCTATGGTGGACAGAGTTGCTGAGAAA------AAAATCAGAATATATTGTTTAGGACATCTCATCTTCAAGACATAGGTTCCTCTTCTTATGGAATTTTGAGGTGTCCTAACTGGA-GGAAGAAGAATTCTTTCCATGGAGACAATAAACAGTCATAATGTTTCATATGAAATTCAT-----------GGAAATGCCTCTGCCAGAGGCTTGGG-AATCTCTTCAGAGAACATTTTCTGTGCTGCAGGATCACAGAGACTGTGGAGAAGAAAATGAAGCTGAGTGCTTGTGGTTGGGATTCCTTCTTTTTCCTCTTTTGTTATTTCTCCTTAGCTTTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14009278 338 - 49578535 TGTGGGT-----TCCGCACAGCTTAGGCTGAGCAGGAAGTATGTTTTCAGACCTGGAATGGTTTCCCTATGGTGGACAGGGTTGCTGGAAAAAAAAATAAAATCAGAACATATTGTTTAGGGCATATGATCTTCAAGAGAGAGATTTTTCTTCTCATGGAAATTTGAGGTGTCCTAGCTGTA-G---GAAGAATTCCTTCC----------------------ATATTTCATATGAAATTCAT-----------GGAAATGCCTCTG-CAGAGACTG----------------------TTTTTGTACTGCAGGATTACAGCGGCTCTGGAGAATCAGATGAAGCGGAGTGCTGTCGGCTGAGATTCCTTCTTCTTC--CTGTTACTGTTTCTTCTTAGCTTTGT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36217634 403 + 80974532 TGTGGATGGCTGCCTAGGAAGCACAGGCTGAATAGGAAGCACATTTTCAAGCCTGCGATAGGCGCCATTTGGTGGACAGAGTTGCTGGGGAA--AAGTAAAATCAGAATGTATTGTTTAGGACATCTGATCTTCAAGGCATGGACTTCTCTTCTTCTAGAACTTTGATATGTACAGTCTGGACAGAAAAAGACTTCTTTCAGTGGCGGCAATAAACAGTGATAGTGTTTCTTACAAAATCCACAGGGATTATAGGAAAATCCTTCTATGAGGGGCTGGGGAAATCTCTTGGGAGAAAGTTCTCTGTACTGTGGGATTACAGAGAACATAGAGGATAAAGCAAAGCCACCTCCTTTTTGTTGACATTTATTCTTTTCTCTTTTTAATCAGTCCTCCTTGGCTTAGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e nomLeu3.chr5 140014093 0 - 143122389 C e panTro4.chr1 224755242 2974 + 228333871 M a score=551351.000000 s hg38.chr1_KI270759v1_alt 18910 203 + 425601 GCCCAGGTCATTTGTCTATCTTCCTTCCCTTGAAATCCCTCCTGCTTTGGGGCCCTGCACTGCCTCTGGAGCATCCAGT-TCTGAGATTCCAATCACAGGGCCAGGCATGAAACACG----GCCATCCCTCAGGCACACGGCTGCTGGGATATGGCAAGCTTGTTAACACGGCAGGACAACCCAAGATGCCATGTTCCTAAAGAAAAT s panTro4.chr1 224758216 203 + 228333871 GCCCAGGTCATTTGTGTATCTTCCTTCCCTTGAGATCCCTCCTGCTTTGGGGCCCTGCACTGCCTCTGGAGCATCCAGT-TCTGAGATTCCAATCACAGGGCCAGGCATGAAACACG----GCCGTCCCTCAGGCACATGGCTGCTGGGATATGGCAAGCTTGTTAACACGGCAGGACAACCCAAGATGCCATGTTCCTAAAGAAAAT i panTro4.chr1 M 2974 C 0 s ponAbe2.chr1 226123082 203 - 229942017 GCCCAGGTCATTTGTGTATCTTCCTTCCCTTGAGATCCCTCCTGCTTTGGGGCCCTGCACTGCCTCTGGAGCGTCCAGT-TCTGAGATTCCAACCACAGGGCCAGACATGAAACATG----GCCGTCCCTCAGGCACACGGCTGCTGGGATATGGCAAGCTTGTTAACACGGCAGGACAACCCAAGATGCCATGTTCCTAAAGAAAAT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16730015 203 - 229590362 GCCCAGGTCATTTGTATATCTTCCTTCCCTTGAGATCCCTGCTGCTTTGGGGCCCTGCACTGCCTCTGGAGCATCCAAT-TCTGAGATTCCAACCACAGGGCCAGGCATGAAACATG----GCAGTCCCTCAGGCACATGGCTGTGGGGATATGGCAAGCTTATTAACACAGCAGCACAACCCAAGATACCATGTTCCTAAAGAGAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223490189 203 - 227556264 GCCCAGGTCATTTGTATATCTTCCTTCCCTTGAGATCCCTCCTGCTTTGGGGCCCTGCACTGCCTCTGGAGCATCCAAT-TCTGAGATTCCAACCACAGGGCCAGGCATGAAACATG----GCCGTCCCTCAGGCACATGGCTGTGGGGATATGGCAAGCTTATTAACACAGCAGCACAACCCAAGATACCATGTTCCTAAAGAGAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16542168 203 - 220367699 GCCCacgtcatttgtatatcttccttccCTTGAGATCCCTCCTGCTTTGGGGCCCTGCACTGCCTCTGGAGCGTCCAAT-TCTGAGATTCCAACCACAGGGCCAGGCATGAAACATG----GCTGTCCCTCAGGCACATGGCTGTGGGGATATGGCAAGCTTATTAACACAGCAGCACAACCCAAGATACCATGTTCCTAAAGAGAat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82341532 203 + 85787240 GCTCAGGTCATTTGTGTATCTTCCTTCCCTTGAGATCCCTCCTGCTTTGGGGCCCTGCACTGCCTCTGGAGCGTCCAAT-TCTGAGATTCCAACCACAGGGCCAGGCATGAAACATG----GCCGTCCCTCAGGCACATGGCTGCGGGGATATAGCAAGCTTATTAACACAGCAGCACAACCCAAGATACCATGTTCCTAAAGAGAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14009616 202 - 49578535 GCCCAGGCCGTTTGTAGATCTTGCTTCCTTTGAGACCCCTGCTGCTTTGGTGCCCTGCACTGCCTCTGGAGCCTCCAGT-CCTGAGATTCCAACCGCAGGGCCAGGCATGAAACGTG----GCCGT-CCTCAGGCACGTGGCTGCTGAGCTATGGCAAGCTTGTTAACACAGCAGGACAACCCAGGATACCCTGTTCCTAAAGAAAAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36218037 205 + 80974532 GCCCAGGTCACTTGTCTATCTCCTTTGACTTGGGA---CATCTACTTTGGTGCCCTACACAGTATTTGGTGTGTGCAGCATCTGAGATGCCCTCCACAGGGCCAGACTCGAGACAGGAGCCGCCATGCCTCAAGCACATCACTGCTGTGCTCCCGCGGACTTGTGAACACAAGAGGAGTATCCAAGATATCATGTTCCTAAAGAAAGT i canFam3.chr7 C 0 I 820 e mm10.chr1 178643509 462 + 195471971 T e nomLeu3.chr5 140014093 0 - 143122389 C a score=637615.000000 s hg38.chr1_KI270759v1_alt 19113 297 + 425601 GGGggccgggcacggtggctcatgcctgtaatcccagcactctgggaggtcgaggtgggcggattacctgaggtcaggagttcgagaccagcctggccaacatggtgaaatcccgtctctacttaaaatacaaaaattagccaggtgtggtggcatgcacctgtaatcccacctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggagcttgcagtgagtcaagatcacgccactgcactccagcctggacgacaaagccagaccttgtctcaaaaaaaaaaaa s panTro4.chr1 224758419 296 + 228333871 GGGggccgggcacggtggctcatgcctgtaatcccagcactctgggaggtcgaggtgggcggattaccggaggtcaggagttcgagaccagcctggccaacatggtgaaatcccgtctctactaaaaatacaaaaattagccaggtgtggtggcatgcacctgtaatcccaccta-tcggggggttggggcaggagaatcgcaagaacccgggaggcggagcttgcagtgagtcaagatcatgccactgcactccagcctgggcgacaaagcgagaccttgtctcaaaaaaaaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226123285 297 - 229942017 GGGggccgggcacggtggctcatgcctgtaatcccagcactctgggaggccgaggtgggcggattacctgaggtcaggagttcgtgaccagcctgtccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatagtggcatgcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggtggagattgcagcgagccaagatcatgccactgcactccagccagggcaacaaagcgagaccttgtctcaagaaaaaaaaa i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16730218 297 - 229590362 GAGggccgggtgcggtggctcacgcctgtaatcccagcattttgggaggctgaggcggggggctcacttaagggcaggagttcgtgaccagcctggcccacatggtgaagctccatctctactaaaaatacaaaaattagccaggcacagtggcacgcacgtgtaatcccatcttctcaggaggttgaggcaggagaatgacttgaacctgggaggtggagattgcagtgagccgagattgcaccactgcactccagtctgggcaacaaagcaagaccttttctcaaaaagaaagaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223490392 297 - 227556264 GAGggccgggtgcggtggctcacgcctgtaatcccagcattttgggaggctgaggcgggtggctcacttaaggtcaggagttcgtgaccagcctggcccacatggtgaagctccatctctactaaaaatacaaaaattagccaggcacagtggcacgcacgtgtaatcccatcttctcaggaggttgaggcaggagaatgacttgaacctgggaggtggagattgcagtgagccgagattgcaccactgcactccagtctgggcaacaaagcaagaccttttctcaaaaagaaagaa i macFas5.chr1 C 0 I 195 s papAnu2.chr1 16542371 297 - 220367699 gagggctgggtgcggtggctcacgcctgtaatcccagcattttgggaggctgaggtgggtggctcacttaaggtcaggagttcgtgaccagcctggcccacatggtgaagctccatctctactaagaatacaaaaattagccaggcacagtggcatgcacgtgtaatcccatcttctcaggaggttgaggcaggagaatgacttgaacctgggaggtggagattgcagtgagccaagattgcaccactgcactccagtctgggcaacaaagcaagaccttttctcaaaaagaaagaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82341735 297 + 85787240 GAGggccaggtgcggtggctcatgcctgtaatcccagcattttgggaggctgaggcgggtggctcacttaaggtcaggagttcgtgaccagcctggcccacatggtgaagctccatctctactaaaaatacaaaaattagtcaggcacagtggcacacacatgtaatcccatcttctcaggaggttgaggcaggagaatgacttgaacctgggaggtggagattgcagtgagccaagattgcaccactgcactccagtctgggcaacaaagcaagaccttttctcaaaaagaaagaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14009818 296 - 49578535 GAGggctgggcctgatggctcatacgtgtaatcccaacactttgggatgctgaggcaggtggatcacttgaggtcaggagttcgtgaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagacagccatggtggggtacacctgcaatcccagctactcaggaggctgaggt-ggagaattgctggaacttgggaggtggacattgcagtgagctgagatcatgccattgcactgtagtctgggtgacaaagtgagaccttgcctcaaaaaaagagag i calJac3.chr19 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36218242 820 + 80974532 I e nomLeu3.chr5 140014093 0 - 143122389 C a score=1434.000000 s hg38.chr1_KI270759v1_alt 19410 7 + 425601 aaaaa-------ga s panTro4.chr1 224758715 14 + 228333871 aaaaaaaaaaaaga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226123582 5 - 229942017 aagaa--------- i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16730515 6 - 229590362 -agaa-------aa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223490884 6 - 227556264 -aaag-------aa i macFas5.chr1 I 195 C 0 s papAnu2.chr1 16542668 6 - 220367699 -agaa-------aa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82342032 6 + 85787240 -agaa-------aa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14010114 7 - 49578535 aaaaT-------GA i calJac3.chr19 C 0 I 1051 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36218242 820 + 80974532 I e nomLeu3.chr5 140014093 0 - 143122389 C a score=12547.000000 s hg38.chr1_KI270759v1_alt 19417 11 + 425601 aaaaaagaaaa s panTro4.chr1 224758729 11 + 228333871 aaaaaagaaaa i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16730521 11 - 229590362 aagaaagaaga i rheMac3.chr1 C 0 I 196 s macFas5.chr1 223490890 11 - 227556264 aagaaagaaag i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16542674 11 - 220367699 aagaaagaaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82342038 11 + 85787240 aagaaagaaga i chlSab2.chr25 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36218242 820 + 80974532 I e calJac3.chr19 14010121 1051 - 49578535 I e nomLeu3.chr5 140014093 0 - 143122389 C e ponAbe2.chr1 226123587 0 - 229942017 C a score=6321.000000 s hg38.chr1_KI270759v1_alt 19428 4 + 425601 AAGA s panTro4.chr1 224758740 4 + 228333871 aaGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226123587 3 - 229942017 -aaa i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16730728 4 - 229590362 aaga i rheMac3.chr1 I 196 C 0 s macFas5.chr1 223490902 4 - 227556264 aaga i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16542685 4 - 220367699 aaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82342049 4 + 85787240 aaga i chlSab2.chr25 C 0 I 257 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36218242 820 + 80974532 I e calJac3.chr19 14010121 1051 - 49578535 I e nomLeu3.chr5 140014093 0 - 143122389 C a score=8882.000000 s hg38.chr1_KI270759v1_alt 19432 6 + 425601 AAGAAA s panTro4.chr1 224758744 6 + 228333871 AAGAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226123590 6 - 229942017 aagaaa i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16730732 6 - 229590362 aagaCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223490906 6 - 227556264 aagaCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16542689 6 - 220367699 aaggaa i papAnu2.chr1 C 0 I 922 s chlSab2.chr25 82342310 6 + 85787240 aagaaa i chlSab2.chr25 I 257 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36218242 820 + 80974532 I e calJac3.chr19 14010121 1051 - 49578535 I e nomLeu3.chr5 140014093 0 - 143122389 C a score=196319.000000 s hg38.chr1_KI270759v1_alt 19438 159 + 425601 ATGATATTCATTGCCCACCTCCTTACACACATACCCAGAGTGGAGTTAATCCTTTCCATATCTGTGTACCCATGCTTCTTTATATA------TAttaagttgaaccatatgaaattgccaggattcacgatcttgacctgcaaaaataggcagtttcatgtagtt s panTro4.chr1 224758750 159 + 228333871 ATGATATTCATTGCCCACCTCCTTACACACATACCCAGAGCGGAGTGAATCCTTTCCATATCTGTGTACCCATGCTTCTTTATATA------TAttaagttgaaccatatgaaattgccaggattcatgatcttgacctgcaaaaataggcagtttcatgtagtt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226123596 162 - 229942017 aTGATATGCATTGCCCA---CCTTACACACATACCCAGAGTGGAGTGAATCCTTTCCATATCTGTGTGCCCATGCTCCTTTATATGTATATCTAttaagttgaaccatatgaaattgccaggattcacgatcttgacctgcaaaaataggcagtttcatgtagtt i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16730738 161 - 229590362 ATGATATTCATTGCCCACCTCCTTACACATATACACAGAGTGGAGTGAATCCTTTCCACATCTGTGTACACATGTTCCTTTATATACA----TAttaaattgaaccatatgaaattgccaagattcaccatcttgacctgcaaaaatcggcagtttcatgtagtt i rheMac3.chr1 C 0 I 438 s macFas5.chr1 223490912 161 - 227556264 ATGATATTCATTGCCCACCTCCTTACACATATACACAGAGTGGAGTGAATCCTTTCCACATCTGTGTACACATGTTCCTTTATATACA----TAttaaattgaaccatatgaaattgccaagattcaccatcttgacctgcaaaaatcggcagtttcatgtagtt i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82342316 161 + 85787240 ATGATATTCATTGCCCACCTCCTTACACACATACACAGAGTGGAGTGAATCCTTTCCACATCTGTGTACCCATGTTCGTTTATATATA----TAttaaattgaaccatatgaaattgccaagattcaccatcttgacctgcaaaaattggcagtttcatgtagtt i chlSab2.chr25 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36218242 820 + 80974532 I e calJac3.chr19 14010121 1051 - 49578535 I e papAnu2.chr1 16542695 922 - 220367699 I e nomLeu3.chr5 140014093 0 - 143122389 C a score=13622.000000 s hg38.chr1_KI270759v1_alt 19597 22 + 425601 gcacctGCTAT--GTGTGGCATTT s panTro4.chr1 224758909 22 + 228333871 gcacctGCTAT--GTGTGGCATTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226123758 22 - 229942017 ccacctaCTAT--GTGTGGCATTT i ponAbe2.chr1 C 0 I 387 s macFas5.chr1 223491073 22 - 227556264 cCAACGACTGG--GTGTGGCATTT i macFas5.chr1 C 0 I 416 s chlSab2.chr25 82342477 24 + 85787240 ccacctaCTAGGTGTGTGGCATTT i chlSab2.chr25 C 0 I 416 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36218242 820 + 80974532 I e calJac3.chr19 14010121 1051 - 49578535 I e rheMac3.chr1 16730899 438 - 229590362 I e papAnu2.chr1 16542695 922 - 220367699 I e nomLeu3.chr5 140014093 0 - 143122389 C a score=75618.000000 s hg38.chr1_KI270759v1_alt 19619 43 + 425601 GTTCTCACTTTCACCGTGAGCGTCATTTGTTGACTTTAGCTTA s panTro4.chr1 224758931 43 + 228333871 GTTCTCACTTTCACCGTGAGCGTCATTTGTCGACTTTAGCTTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226124167 43 - 229942017 GTTCTTACGTTCACCATGAGCGTCATTTGTTGACGTTAGCTTA i ponAbe2.chr1 I 387 C 0 s rheMac3.chr1 16731337 43 - 229590362 GTTCTTACTTTCACCGTGAGCATCATTTGTTGGCGTTAGCTTA i rheMac3.chr1 I 438 C 0 s macFas5.chr1 223491511 43 - 227556264 GTTCTTACTTTCACCGTGAGCATCATTTGTTGGCGTTAGCTTA i macFas5.chr1 I 416 C 0 s papAnu2.chr1 16543617 43 - 220367699 GTTCTTACTTTCACTGTGAGCATCATTTGTTGGCGTTAGCTTA i papAnu2.chr1 I 922 C 0 s chlSab2.chr25 82342917 43 + 85787240 GTTCTTACTTTCACCGTGAGCATCATTTGTTGACGTTAGCTTA i chlSab2.chr25 I 416 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36218242 820 + 80974532 I e calJac3.chr19 14010121 1051 - 49578535 I e nomLeu3.chr5 140014093 0 - 143122389 C a score=173234.000000 s hg38.chr1_KI270759v1_alt 19662 73 + 425601 AAACCAACCTTATTCCACTGCATGCCACCTTGTCCTCAGAGAATTCATAAAGACAGGCTTAAGAATCCATTTC s panTro4.chr1 224758974 73 + 228333871 AAACCAACCTTATTCCACTGCATGCCACCTTGTCCTCAGAGAATTCATAAAGACAGGCTTAAGAATCCATTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226124210 73 - 229942017 AAACCAACCTTATTCCACTGCATGCCACCTTGTCCTCAGAGAATTCATAAAGACAGGCTTAAGAATCCATTCT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16731380 73 - 229590362 AAACCAACGTTATTTCCCTGCATGCCACCTTGTCCTCAGAGAATTCATAAAGACAGGCTTAAGAATCCATTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223491554 73 - 227556264 AAACCAACGTTATTTCCCTGCATGCCACCTTGTCCTCAGAGAATTCATAAAGACAGGCTTAAGAATCCATTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16543660 73 - 220367699 AAACCAACGTTATTTCCCTGCATGCCACCTTGTCCTCAGAGAATTCATAAAGACAGGCTTAAGAATccatttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82342960 73 + 85787240 AAACCGACATGATTCCCCTGCGTGCCACCTTGTCCTCAGAGAATTCATAAAGACAGGCTTAAGAATCCATTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14011172 73 - 49578535 aaaCCCACCTTATTCCACGGCATGCCACTTTGTCCTCAGAGAATTCATAAAGACAGGCTTAAGAATCCCTTTC i calJac3.chr19 I 1051 I 506 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36218242 820 + 80974532 I e nomLeu3.chr5 140014093 0 - 143122389 C a score=487790.000000 s hg38.chr1_KI270759v1_alt 19735 306 + 425601 Agctgggcgcggtggctcacgccagtaatcccagcactttggaaagccgaggcaggcagatcacctgaggtctgagttcgagaccagcctgaccaacatggtgaaaccccgtctctactacaagtacaaaattagcgggcgtggtggtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcggtgagccaagatcgcatcgttgcactccagcctgggcaacaagagtgagactccattt-aaaaaaaaaaggaaaaa-----aaaagaaTCC s panTro4.chr1 224759047 306 + 228333871 Agctgggcgtggtggctcacgccagtaatcccagcactttggaaagccgaggcaggcggatcatctgaggtctgagtttgagaccagcctgaccaacatggtgaaaccccgtctctgctaaaagtacaaaattagcgggcgtggtggtgcatgcctgtaatcccacctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaagatcgcgtcgttgcactccagcctgggcaacaagagtgagactccatct-aaaaaaaaaaggaaaaa-----aaaagaaTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226124283 306 - 229942017 ggctgggtgcggtagctcatgcctgtaatcccagcactttgggaagccgaggcgggcggatcatctgaggtctgagttcgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaatta-ctggcatggtggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagccaagatcgcatcattgcattccagcctgggcaacaagagcaagactctatctaaaaaaaaaaaaggaaaa-----aaaagaaTCC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16731453 301 - 229590362 ggccgggcgcggtggctcacacctgttgtcccagaactttgggaagctgaggcaggtggatcacctgaggtctgagtttgagaccagcctgaccaacatggtaaaaccccatctctactaaaaatacaaaattagccggagtggtggcatatgcctgcaatccc-----ttcaggaggctgaagcaggagaatcgcttgaacccgggaggtagaggttgcggtaagccgagatcgcgccattacact-----tggggcaacaagagtgagactctgtcc-aaaaaaaataaaaataataattaaaaaaaTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223491627 302 - 227556264 ggccgggcgcggtggctcacacctgttgtcccagaactttgggaagctgaggcaggtggatcacctgaggtctgagtttgagaccagcctgaccaacatggtaaaaccccatctctactaaaaatacaaaattagccggagtggtggcatatgcctgcaatccc-----ttcaggaggctgaagcaggagaatcgcttgaacccgggaggtagaggttgcggtaagccaagatcgcgccattacact-----cggggcaacaagagcgagactctgtccaaaaaaaaataaaaataataattaaaaaaaTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16543733 301 - 220367699 ggctgggcgcggtggctcacacctgttgtcccagaactttgggaagctgaggcaggtggatgacctgaggtctgagtttgagaccagcctgaccaacatggtaaaaccccatctctactaaaaatacaaaattagccggagtagtggcatatgcctgcaatccc-----ttcaggaggctgaagcaggagaatcgcttgaacccgggaggtagaggttgcggtaagccgagatcgcgccattacact-----cggggcaacaagagcgagactctgtcc-aaaaaaaataaaaataataattaaaaaaatcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82343033 306 + 85787240 ggccgggtgcggtggctcacacctgttgtcccagaactttgggaagctgaggcaggtggatcacctgaggtctgagtttgagaccagcctgaccaacatggtaaaaccccatctctactaaaaatacaaaattagcgggagtggtggcatatgcctgcagtccc-----ttcgggaggctgaagcaggagaatcgcttgaacccgggaggtagaggttgcggtgagccgagatcacgccattacactccagcctgggcaacaagagcgagactctgtct-aaaaaaaataaaaataataattaaaaaaaTCC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e canFam3.chr7 36218242 820 + 80974532 I e calJac3.chr19 14011245 506 - 49578535 I e nomLeu3.chr5 140014093 0 - 143122389 C a score=10192.000000 s hg38.chr1_KI270759v1_alt 20041 4 + 425601 ATTT s panTro4.chr1 224759353 4 + 228333871 ATTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226124589 4 - 229942017 ATTT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16731754 4 - 229590362 ATTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223491929 4 - 227556264 ATTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16544034 4 - 220367699 attt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82343339 4 + 85787240 ATTT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36219062 4 + 80974532 ATTT i canFam3.chr7 I 820 C 0 e mm10.chr1 178643509 462 + 195471971 T e calJac3.chr19 14011245 506 - 49578535 I e nomLeu3.chr5 140014093 0 - 143122389 C a score=130628.000000 s hg38.chr1_KI270759v1_alt 20045 47 + 425601 CATCCAGCCTTCTGATTCTAGGAATAGGAACGTCAATTCAATCCAAT s panTro4.chr1 224759357 47 + 228333871 CATCCAGCCTTCTGATTCTAGGAATAGGAACGTCAATTCGATCCAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226124593 47 - 229942017 CATCCAGCCCTCTGATTCTAGGAATAGGAACGTCAGTTCAATCCAAT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16731758 47 - 229590362 CATCCAGCCTTCTGATTCTAGGAATAGGAACATCAATTCAATCCAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223491933 47 - 227556264 CATCCAGCCTTCTGATTCTAGGAATAGGAACATCAATTCAATCCAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16544038 47 - 220367699 catCCAGCCTTCTGATTCTAGGAATAGGAACATCAATTCAATCCAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82343343 47 + 85787240 CATCCAGCCTTCTGATTCTAGGAATAGGAACATCAATTCAATCCAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14011751 47 - 49578535 CATCCATCCTTCTGATTCTAGGAATAGGAATGTCAGTTCAATCCGGT i calJac3.chr19 I 506 C 0 s canFam3.chr7 36219066 47 + 80974532 CATCTAGCCGTCCAATTCTAGGGCTATGAGCTTGAGTTCAAACTGTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178643509 462 + 195471971 T e nomLeu3.chr5 140014093 0 - 143122389 C a score=668976.000000 s hg38.chr1_KI270759v1_alt 20092 329 + 425601 GAATCCTGGGACAGCATTTGGTGTGCCAGGT------AGAGCGTGTGTGGCGGAGGGGGG----GTGGTATTGTTTGTGACGTAGGTTTTCTGATTGGAA--CTACTGTTG-CAGGCTTGACCATCACC----TCCCACT----ACTGCGTGTGAG-GCTAAA----T-----GCTG-----CTCCCTCGCTTATTGCTAAATGGAGAGAATACGAGGGAGACAATGGGGAACGTGAAAGCAACAA---CATTGTCAACTGGATTTGATGCAGGGCAGTGGGCAGGGACTCAGAACTCCACTCCCCCTACTCAGACGGGCAATCATGTCACAGTCAAGATGAGAAATACCCATCGAGATT---TGAGTGCA s panTro4.chr1 224759404 316 + 228333871 GAATCCTGGGACAGCATTTGGTGTGCCAGGT------AGAGTGT---------AGGGGGG--------TATTGTTTGTGACGTAGGTTTTCTGATTGGAA--CTACTGTTG-CAGGCTTGACCATCACC----TCCCACT----ACTGCATGTGAG-GCTAGA----T-----GCTG-----TTCCCTCGCTTATTGCTAAATGGAGAGAATACGAGGGAGACAATGGGGAACGTGAAAGCAACAA---CATTGTCAACTGGATTTGATGCAGGGCAGTGGGCAGGGACTCAGAACTCCACTCCCCCTACTCAGACGGACAATCATGTCACAGTCAAGATGAGAAATACCCAACGAGATG---TGAGTGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226124640 318 - 229942017 GAATCCTGGGACAGCATTTGGTGTGCCAGGT------AGAGTGT---------GGGGGGG--------TATTGGTTGTCACAGAGGTTTTCTGATTGGAACTCTACTGTTG-CAGGCTTGACCATCACC----TCCCACT----ACTGCATGTGAG-GCTAAA----T-----GCCG-----CTGCCTCGCTTATTGCTAAATGGAGAGAATATGAGGGACACAATGGAGAACGTGAAAGCCACAA---CATTGTCAACTGGCTTTGATGCAGGGCAGTGGGCAGGGACTCAGAACTCCGCTCCCCCTACTCAGACGGGCAATCATGTCACCGTCAAGATGAGAAATACCTAACGAGATC---TGAGTGCA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16731805 323 - 229590362 GAATCCTGGGGC-GCATTTGGTGTGCCAGGT------ACAGTGT---------TGGGGGCGGGGGGGCTATTGGTTGTGACGGAGGTTTTCTGATTGGAA--CTACTGTTG-CAGGCTTGACCATCACC----TCCCACT----ACTGCATGCAAG-GCTAAA----T-----GCTG-----CTGCCTCGCTTATTGCCAAATGTAGGGAATACAAGGGAGACAATGAGGAACGTGAAAGCAACAA---CATTGTCAACTGGATTTGATGCAGGGCAATGGGCAGGAACTCAGAACGCCTCTCCCCTCACTCAGACGGGCAACCATGTCACAGTCAAGATGAGAAATACCTAACGAGATT---TGAGTGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223491980 317 - 227556264 GAATCCTGGGGT-GCATTTGGTGTGCCAGGT------ACAGTGT---------GGGGGGT------GCTATTGGTTGTGACGGAGGTTTTCTGATTGGAA--CTACTGTTG-CAGGCTTGACCATCACC----TCCCACT----ACTGCATGCAAG-GCTAAA----T-----GCTG-----CTGCCTCGCTTATTGCTAAATGGAGGGAATACAAGGGAGACAATGGGGAACGTGAAAGCAACAA---CATTGTCAACTGGATTTGATGCAGGGCAATGGGCAGGGACTCAGAACGCCTCTCCCCTCACTCAGACGGGCAATCATGTCACAGTCAAGATGAGAAATACCTAACGAGATT---TGAGTGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16544085 319 - 220367699 GAATCCTGGGGCAGCATTTGGTTTGCCAGGT------AGAGTGT---------ggggggg-----TACTATTGGTTGTGATGGAGGTTTTCTGATTGGAA--CTACTGTTG-CAGACTTGACCATCACC----TCCCACT----ACTGCATGCAAG-GCTAAA----T-----GCTG-----CTGCCTCGCTTATTGCTAAATGGAGAGAATACAAGGGAGACAATGGGGAACGTGAAAGCAACAA---CATTGTCAACTGGATTTGATGCAGGGCAATGGGCAGGGACTCAGAACGCCTCTCCCCTCACTCAGACGGGCAATCATGTCACAGTCAAGATGAGAAATACCTAACGAGATT---TGAGTGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82343390 318 + 85787240 GAATCCTGGGGCAGCATTTGGTGTGCCAGGT------AGGGTGT---------GTGGGGG------GCTATTGGTTGTGACGGAGGTTTTCTGATTGGAG--CTACTGTTG-CAGGCTTGACCATCACC----TCCCACT----ACTGCATGCAAG-GCTAAA----T-----GCTG-----CTGCCTCGCTTATTGCTACATGGAGAGAATACAAGGGAGACAATGGGGAACGTGAAAGCAACAA---CATTGTCAACTGAATTTGATGCGGGGCAATGGGCAGGGACTCAGAACGCCTCTCCCCTCACTCAGACGGGCAATCATGTCACGGTCAAGATGAGAAATACCTAACGAGATC---TGAGTGCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14011798 309 - 49578535 GAGTCCCGACACGGCG-TTGGTGTGCCGGGC------ACACTGT---------GGGGGAT---------ATTGGTGGTGCCGGCGGTTG--TGATTAGAA-----CCGTTG-CAGGCTTGTCCTTCGCC----TCCC-CT----ACTCCATGCGAG-GCTAAA----T-----G-TG-----CACCCTCGCTCACTGCTAAATGGAGAGAGTACTCGGGAGGCCATGGGGAACGTGAAAGCGGCACCGTCATCGTCAGCTGGATTTGATGCAGGGCGATGGGCAGGGGCCCAGGACACCTCTCCCTCTCCGCAGATGG-TAACGACGCCACAGCGGGGACGAGACCTGCCTAACAGGATC---CGAGCGCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178643047 302 + 195471971 GAATGTTTGCACAGCTTCCTGTGTGTCAGTCAGGCAAAGAGTGT---------GTGTGAT---------ACGGGCTGTGGTTCAGGTTTATGGCCCAGCA--TGGCTGCCA-TAGGCTTGAGCA-----------------------GTTTGGAGG-CCTGGGCCTCT-----GCTGTCCATCTCTCTTTTTCATAGTTAACCAGAGACAA--------AAACAAAGGTTTAAAATAATGTAACAG---TGTTGCAAGCAGGATTCCATGCTTTGC--TAGGCTGGAGCACAAACCACCTCTCCCCCTTTAGAAACATAAACTATTGCAAAAA--AAGATGAGAAAGGCCAGGTGAGATCTTGTGAG---- i mm10.chr1 T 462 C 0 s canFam3.chr7 36219113 300 + 80974532 GAGTATTCCAGTAGCCTTCCAAATGTCAAGT------GCAGGGT--------------------------------GTGATGGGGATTTTCCAGCCAGAC--CTGCTTCTGCCAGGCTTGACCGTTGTCACTGTCTCCCTGAGGGCTACTCAGAAGCGCTGTC----TCCGTGGCTG-----CTTCCTC-CTTACTGTGAAGTGGAGAGAA--GCAGGGAGATGAGGGAAAAGACTA----TACAA---CATGGTGAACGGGGTTTGCTGCCAAG--ATGGACAGGGACACAGCCTGCCTCTGCCCTGGCTCAGAAGAGTGCTCGTGGCCCCATAAAGGTGAGGAGCATCTAACAAG------TGAA---- i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140014093 0 - 143122389 C a score=1416641.000000 s hg38.chr1_KI270759v1_alt 20421 403 + 425601 TGTGACTCTTCTAAAAGTAAGGCGTGTTCTTCACAG--CGCACACTGAGCACCGTTGCAGTCAATCTAACTGATGTTTTTCAAATGTAAACCAAAGGCC-TCAAGCAGCCACAGTTTATCTCCTGACTTCCTTTTTATTGTCACAA-GG-TGTTCTGTTTAGAAAGAAAACAAGCCGTTAGAATATTCCAACAGAAACAGCATTAACATGATTTACTAGGTGGGTTATTTAGGGTTACTCAGCCAAGAAATGGCATTTCTGGACAGTGGTAGATTTGTTCAGCCTCTCACAAATTGAGGGAAGTGGCTTT--ATTTCTTCCCACCCAGCTAGTTCCCCTGTCCTCAGCCCAGAGATTCAAATGCCAACGGCTGCCAAGTTTACCCCAGGACCGCCAGGCAAAGGTTCCGG s panTro4.chr1 224759720 403 + 228333871 TGTGACTCTCTTAAAAGTAAGGCGTGTTCTTCACAG--CGCACATTGAGCCCTGTTGCAGTCAATCTAACTGATGTTTTTCAAATGTAAACCAAAGGCC-TCAGGCAGCCACAGTTTATCTCCTGACTTCCTTTTTATTGTCACAA-GG-TGTTCTGTTGAGAAAGAAAACAAGCTGTTAGAATATTCCAACAGAAACAGCATTAACATGATTTACTAGGTGGGTTATTTAGGGTTACTCCGCCAAGAAATGGCATTTCTGGACAGTGGTAGATTTGTTCAGCCTCTCACAAATTGAGGGAAGTGGCTTT--ATTTCTTCCCACCCAGCTAGTTCCCCTGTCCTCAGCCCAGAGATTCAAATGCCAACGGCTGCCAAGTTTACTCCAGGACTGCCAGGCAAAGGTTCCGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226124958 402 - 229942017 TGTGACTCTTCTAAAAGT-AGGCGTGTTCTTCACAG--TGCACATTGAGCACCGTTGCAGTCAATCTAACTGATGTTTTTCAAATGTAAACCAAAGGCC-TCAAGCAGCCACAGTTTATCTCCTGACTTCCTTTTTATTGTCACAA-GG-TGTTCTGTTTAGAAAGAAAACAAGCCGTTAGAATATTCCAACAGAAACAGCATTAACATGATTTACTAGGTGGGTTATTTAGGGTTACTCAGCCAAGAAATGGCATTTCTGGACAGTGGTAGATTTGTTCAGCCTCTCACAAATTGAGGGAAGTGGCTCT--GTTTCTTCCCACCCAGCTAGTTCCCCTGTCCTCAGCCCAGAGATTCAAATGCCAACGGCTGCCGAGTTTACTCCAGGACCACCAGGCAAAGGTTCCGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140014093 397 - 143122389 TGTGACTCTTCTAAAAGTAAGGCGTGTTCTTCACAG--CGCACATTGAGCACCGTTGCAGTCAACCTAACTGATGTTTTTCAAATGTAAACCAAAGGCC-TCAAGCAGCTACAGTTTATCTCCTGACTTCCTTTTTATTGTCACAA-GG-TGTTCTGTTTAGAAAGAAAACAAGCCGTTAGAATATGCCAACAGAAACAGCATTAACATGATTTACTAGGTGGGTTATTTAGGGTTACTCAGCAAAGAAATGGCATTTCTGGACAGTGGTAGATTTGTTCAGCCTCTCACAAATTGAGGGAAGTGGCTTT--ATTTCTTCCCACCCAGCTAGTTCCCCTGTCCTCAGCCCAGAGATTCAAATGCCAACGGCT------TTTACTCCAGGACCACCAGGCAAAGGTTCTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16732128 400 - 229590362 TGTGACTCTTGTAAAAGTAAGGCGAGTTCTTCCCAG--TGCACATCGAGCACCCTTGCAGTCAATGTAACTGATGTTTTCCGAATGTGAAC--AAGGCC-TCAGGCAACCACAGTGTATCTCCTGACTTCCTTTTTATTGTCACAA-GG-TGTTCTGTTTAGAAAGAAAACAAGCCGTCAGAATATTCCAACAGAAACAGCATTAACGTGATTTACTAGGTGGGTTATTTAGGGTTACTCAGCAAAGAAATGGCATTTCTGGACAGTGGTAGATTTGTTCAGCCTCTCGCAAATTCAGGGAAGTGGCTTT--ATTTCTTCCCACCCAGCTAGTT-CCCTGTCCTCGGCCCAGAGATTCAAACGCCAACGGCTGCCGAGTTTACTCCAGGACCGCCAGGCACAGGTTCTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223492297 400 - 227556264 TGTGACTCTTGTAAAAGTAAGGCGAGTTCTTCCCAG--TGCACATCGAGCACCCTTGCAGTCAATGTAACTGATGTTTTCCGAATGTGAAC--AAGGCC-TCAGGCAGCCACAGTGTATCTCCTGACTTCCTTTTTATTGTCACAA-GG-TGTTCTGTTTAGAAAGAAAACAAGCCGTCAGAATATTCCAACAGAAACAGCATTAACGTGATTTACTAGGTGGGTTATTTAGGGTTACTCAGCAAAGAAATGGCATTTCTGGACAGTTGTAGATTTGTTCAGCCTCTCGCAAATTCAGGGAAGTGGCTTT--ATTTCTTCCCACCCAGCTAGTT-CCCTGTCCTCGGCCCAGAGATTCAAACGCCAACGGCTGCCGAGTTTACTCCAGGACCGCCAGGCACAGGTTCTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16544404 399 - 220367699 TGTGACTCTTGTAAAAGTAAGACGTGTTCTTCCCAG--TGCACATTGAGCACCCTTGCAGTCAGTGTAACTGATGTTTTCCAAATGTAAAC--AAGGCC-TCAGGCAGCCACAGTTCATCTCCTGACTTCCTTTTTATTGTCACAA-GG-TGTTCtgttgagaaagaaaacaagccgTTAGAATATTCCAACAGAAACAGCATTAACGTGATTTACTAGGTGGGTTATTTAGGGCTACTCAGCAAagaaatggcatttctggacaGTGGTAGATTTGTTCAGCCTCTCGAAAATTCAGGGAA-TGGCTTT--ATTTCTTCCCACCCAGCTAGTT-CCCTGTCCTCGGCCCAGAGATTCAAATGCCAACGGCTGCCGAGTTTACTCCAGGACCGCCAGGCACAGGTTCTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82343708 400 + 85787240 CGTGACTCTTGTAAAACTAAGACGTGTTCTTCCCAG--TGCACATTGAGCACCCTTGCAGTCAGTGTAACTGATGTTTTTCAAAGGTAAAC--AAGGCC-TCAAGCAGCCACAGTTTATCTCCTGACTTCCTTTTTATTGTCACCA-GG-TGTTCTGTTTAGAAAGAAAACAAGCCGTTAGAATATTCCAACAGAAACAGCATTAACGTGATTTACTAGGTGGGTTATTTAGGGTTACTCAGCAAAGAAATGGCATTTCTGGACAGTGGTAGATTTGTTCAGCCTCTCGCAAATTCAGGGAAGTGGCTTT--ATTTCTTCCCACCCAGCTAGTT-CCCTGTCCTCAGCCCAGAGATTCAAATGCCAACGGCTGCCGAGTTTACTCCAGGACCACCAGGCACAGGTTCTGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14012107 389 - 49578535 TGTGATTTTCCTAAAGG-AAGGTGCG-TCTTCACAG--TGCACGTT-----------CACACAGTCTAACTGACGCTTTCCAAACGCACACGAAAGGCCATCGGGCAGCCACTGCTCGTCTCCTCACTTCCTTTTTGTCGTCACAA-GG-TGTTCTGTTCAGAAAGAAAG-AAGCTGTCAGAATCTTCCAGCAGAAATATCATGAACATGATTTACTAGGTGGGTTCTTTGGGGGTACTGAGCAAAGCAATGGCATTTCCAGACCATGGTGCATTTGTTCAGCCTCCCACAAATTCAGGGAAGTGGCTTT--ATTTCTTCCCACCTGAATAGGCCCCCTGTCCTCTGCCTGGAGACTGCAATGCCAGCAGCTGCTGGG-TTGCTCCAGGACCGCCAGGCACAGCTTCCAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178643349 393 + 195471971 TGTGATTTCCCTGGGAAGGAGGCATA--------------CGTATTTAGCTGGCTTGCAGTAAATCTAACTGATGTTTTCCAAAGGTAAACTGAAAGCCATCAAGTAG-TAGAGTTTATCTCTCGACTTCATTTTTATTGCCACAACTC-CGTTCTGTTTAGAAAGCAAACAAGCCGTTAGAATATTCCAACAGAAATGTCGCCAACATGATTTAGTAGGTGGGTTATTTAGTGTTCATTAGCAGAGTCCCAGCTTTGGTGGACAGTGGTGAATTTGTTTTGCCTCTTTCAAGTCCAGTGAAATGGCCTTTATTTTTTTCCCACCCAGGTAGTCACCCTGT-CTCAGTAGGAAGATTCAAATTCCAACGGCTCTTAGGTTTATTCCAGAGCTGTCAAACACAGGTTCTGA i mm10.chr1 C 0 C 0 s canFam3.chr7 36219413 372 + 80974532 TCTGGACGTCCTGTAAGTAGGTTGTGTCCTTTGCAGGCTGCATGTTCACAGTGGCTCTGGTGAAT-TAACCAATG-------------AGCAGAAGTCA-TCAAGCAACAGCACTATATCTCCTGACTTTGCTCTTGTTGTCACAG-GGCTGTTCTGTTTGGAAAGAAAACAAGCTCATAGAATATTCCAGCAGGAATAGCAGTAATGTGATTTAGTAGGTGGGTTATTTCAGGTTACTTAGCAAAGTCACAGTGTTTGTGAACAGTGGGAAATTTGTTCGGCTCCTCACAAGTGCCGTGAAGGGGCCCT--TTT--------------------TTCTGTCCTCAGCCCAGAGACTCAATTTCCAAGGGCCATTGGGTTTACTCCAGGGCTGCCAAGCACATGTTCTGG i canFam3.chr7 C 0 C 0 a score=482095.000000 s hg38.chr1_KI270759v1_alt 20824 149 + 425601 ACCACTGTTTGTTTTCCATTTCTGTGGCCTCATCATGCTCAGAAATGCTGACTTCTACGAAGA-GCCCAGAAAAGTTCAGATGTGTGCCAAGGCTTTGGTTGTAGGCTTGGCACAAGGAGCAGCAGCTGGTAAGGACCAGGAGACAGCCC s panTro4.chr1 224760123 149 + 228333871 ACCACTGTTTGTTTTCCATTTCTGTGGCCTCATCATGCTCAGAAATGCTGACTTCTACGAAGA-GCCAAGAAAGGTTCAGATGTGTGCCAAGGCTTTGGTTGTAGGCTTGGCACAAGGAGCAGCAGCTGGTAAGGACCAGGAGACAGCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226125360 148 - 229942017 ACCACTGTTTGTTTTCCATGTCTGTGGCCTCATCATGCTCAGAAATGCTGACTTCTACGAAGA-GCCAAGAAA-GTTCAGATGTGTGCCAGGGCTTTGGTTGTGGGCTTGGCACAAGGAGCAGCAGCTGGTAAGGACCAGGAGACAGCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140014490 149 - 143122389 ACCATTGTTTGTTTTCCATTTCTGCGGCCTCATCATGCTCAGAAATGCTGACTTCTATGAAGA-GCCAAGAAAAGTTCAGATGTGTGCCAAGGCTTTGATTGTGGGCTTGGCACAAGGAGCAGCAGCTGGTAAGGACTAGGAGACAGCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16732528 149 - 229590362 ACCACTGTTTGTTTTCCATTTCCATGGCCTCGTAAAGCTCAGAAATGCTGACTTCTACAAAGA-GCCAAGAAAAGTTCAGATGTGTGCCAAGGCTTTGCTTGTGGGCTTGGCAGAAGGAGCAGCAGCTGGTAAGGACCAGGGGACAGCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223492697 149 - 227556264 ACCACTGTTTGTTTTCCATTTCCATGGCCTCGTAAAGCTCAGAAATGCTGACTTCTACAAAGA-GCCAAGAAAAGTTCAGATGTGTGCCAAGGCTTTGCTTGTGGGCTTGGCAGAAGGAGCAGCAGCTGGTAAGGACCAGGGGACAGCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16544803 149 - 220367699 GCCACTGTTTGTTTTCCATGTCCATGGCCTCATAAAGCTCAGAAATGCTGACTTCTACAAAGA-GCCAAGAAAAGTTCAGATGTGTGCCAAGGCTTTGCTTGTGGGCTTGGCAGAAGGAGCAGCAGCTGGTAAGGACCAGGGGACAGCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82344108 149 + 85787240 ACCACTGTTTGTTTTCCATTTCCATGGCCTCATAAAGCTCAGAAATGCTGACTTCTACAAAGA-GCCAAGAAAAGTTCAGATGTGTGCCAAGGCTTTGCTTGTGGGCTTGGCAGAAGGAGCAGCAGCTGGTAAGGTCCAGGGGACAGCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14012496 147 - 49578535 ACCACTGTCTCTTTT-CATTTCTGTGGCCTTATAATGCTCAGAAATGTTGACTTCTACAGAGA-GCCAAGGAAAGTTCAAATGTGTGCCAAGGCTCTGGTGGTGGGCTTGGGACAAGGAGCAGCAGCTTGTAAAGAGCAGGAGAC-GCCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178643742 147 + 195471971 GCCGTTCTCT-TTTTCAGTTTTGGGGGCCCTGCAGTGCTTGGAAGTGTTGACTTTTAGGGAGAGGCCAAGAAAAGCCTCAGTGTGTGCCAAGACGTTAGCTGTGGGCTTGGCACCAGGAAGGTCAGCTGGTGGGGAT--GGGGTCAGTTG i mm10.chr1 C 0 C 0 e canFam3.chr7 36219785 0 + 80974532 C a score=319388.000000 s hg38.chr1_KI270759v1_alt 20973 111 + 425601 GGCCTCCTCCATGGTGCCTGCCTCTCATAGAAGC--AGTCAGGAGGACAAGCTTTTGGTTTCCGCAGACTTAGCAGTCATTCCTGTGTTCCTAAGAATCATACTCGGGATTTT s panTro4.chr1 224760272 111 + 228333871 GGCCTCCTCCATGGTGCCTGCCTCTCGTAGAAGC--AGTCAGGAGGACAAGCTTTTGGTTTCCGCAGACTTAGCAGTCATTCCTGTGTTCCTAAGAATCATACTCGGGATTTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226125508 111 - 229942017 GGCCTCCTCCATGGTGCCTGCCTCTCATACAAGC--AGTCAGGAGGACAAGCTTTTGGTTTCCGCAGACTTAGCAGTCATTCCTGTGTTCCTAAGAATCAAACTCGGGATTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140014639 113 - 143122389 GGCCTCCTCCATGGTGCCTGCCTCTCATGGAAGCAAAGTCAGGAGGACAAGCTTTTGGTTTCTGCAGACTTAGCAGTCATTCCTGTGTTCCTAAGAATCATACTCGGGATTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16732677 113 - 229590362 GGCCTCCTCTATGGTGCTTGCCTCTCACAGAAGCAAAGTCAGGAGGACAAGCTTTTGGTTTCCGCCGACTTAGCAGACATTCCTGTGTTCCGAAGAACCATACTCGGGATTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223492846 113 - 227556264 GGCCTCCTCTATGGTGCTTGCCTCTCACAGAAGCAAAGTCAGGAGGACAAGCTTTTGGTTTCCGCCGACTTAGCAGACATTCCTGTGTTCCGAAGAACCATACTCGGGATTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16544952 113 - 220367699 GGCCTCCTCTATGGTGCTTGCCTCTCACAGAAGCAAAGTCAGGAGGACGAGCTTTTGGTTTCCGCTGACTTAGGAGGCATTCCTGTGTTCCTAAGAACCATACTcgggatttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82344257 113 + 85787240 GGCCTCCTCTCTGGTGCTTGCCTCTCACAGAAGCAAAGTCAGGAGGCCAAGCTTTTGGTTTCCGCCGACTTAGCAGGCATTCCTGTGTTCCTGAGAACCATACTTGGGATTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14012643 113 - 49578535 GGCCTCCTCTGTGATGCCTGCCTCTCTCAGAAGCAAATTCATGAGGACAAGCTTCTGGTTTCTGTGCGCTTAGCAGGCATTCCGGTGTTCCTAAGAATCATACCCAGGATTTA i calJac3.chr19 C 0 I 308 s mm10.chr1 178643889 102 + 195471971 G----CTTCCAGGGTAC--ACTTCCCACAGAGGC-GATTCAGGAGGGC---TGTGTGGTGTGTATGGACTTGGTGGGTCTTACTGTATCTCC-AGAATAACATTCAGGATTTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36219785 37 + 80974532 ---------------------------------------------GAC-------------------------------TCTCTCCATCCCCAAGAATTATATTCATGACTTG i canFam3.chr7 C 0 C 0 a score=714094.000000 s hg38.chr1_KI270759v1_alt 21084 211 + 425601 AAAAATTCATGTATTTAGTtataactgt--gaaatatcatagaaccgggaggtgatgtccaagtcatc--t---ggc-------cagtccagtttctccttttgcacatcaaggatcaggccccaagaggccaagggattAGTGGGAACCCTTCTTCTTGCCTTCACATCCATCTCTCAGT------------CTTTGTTTCCTATCGCTTACAG--T---TGTTTTTCACTTC-TCTCTT--CT s panTro4.chr1 224760383 213 + 228333871 AAAAATTCATGTATTTAGTtataactgt--gaaatatcatagaaccgggaggtgatgtccaagtcatc--t---ggc-------cagtccagtttctccttttgcacatcaaggatcaggccccaagaggccaagggattAGTGGGAACCCTTCTTCTTGCCTTCACACCCATCTCTCCGC------------CTTCGTTTCCTATCGCTTACAG--G---TGTCTTTCACTTC-TCTCTTTTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226125619 213 - 229942017 AAAAATTCTTGTATTTAGTtataactgt--gaaatatcatagaactgggaggtgatgtccaagtcatc--t---ggc-------cagtccagtttctccttttgcacatcaaggatcaggccccaagaggccaagggattAGTGGGAACCCTTCTTCTTGCCTTCACATCCATCTCTCAGT------------CTTTCTTTCCTATTGCTTACAG--T---TGTCTCTCACTTC-CCTCTCTTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140014752 213 - 143122389 AAAAATTCATGTATTTAGTtataactgt--gaaatatcatagaaccgggaggtgatgtccaagtcatc--t---ggc-------cagtccagtttctccttttgcacatcaaggatcaggccccaagaggccaagggattAGTGGGAGCCCTTCTTCTTGCCTTCACATCCATCTCTCCGT------------CTTTCTTTCCTATCGCTTGCAG--T---TGTCTTTCACTTC-TCTCTTTTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16732790 213 - 229590362 AAAAATTCATGTATTTAGTTATAACTGT--GAAATATCATAGAACCGGGAGGTGATGTCCAAGTCATC--T---GGC-------CAGTCCAGTTTCTCCTTTTGGACGTCAAGGATCAGACCCCAAGAGGCCAAGGGATTAGTGGGAACCCTTCTTCTTGCCTTCACGTCCATCTCTCAGT------------CTTTCTTTCCTATCGCTTATAG--T---TTTCTTTCACTTC-TCTCTTTCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223492959 213 - 227556264 AAAAATTCATGTATTTAGTTATAACTGT--GAAATATCATAGAACCGGGAGGTGATGTCCAAGTCATC--T---GGC-------CAGTCCAGTTTCTCCTTTTGGACGTCAAGGATCAGACCCCAAGAGGCCAAGGGATTAGTGGGAACCCTTCTTCTTGCCTTCACATCCATCTCTCAGT------------CTTTCtttcctatcgcttatag--t---tttctttcacttt-tctctttcct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16545065 213 - 220367699 aaaaattcacgtATTTAGTTATAACTGT--GAAATATCATAGAACCGGGAGGTGATGTCCAAGTCATC--T---GGC-------CAGTCCAGTTTCTCCTTTTGCACGTCAAGGATCAGACCCCAAGAGGCCAAGGGATTAGTGGGAACCCTTCTTCTTGCCTTCACGTCCAtctctcagt------------ctttctttcctatcacttatag--t---tttctttcacttc-tctctttcct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82344370 213 + 85787240 AAAAATTCATGTATTTAGTTATAACTGT--GAAATATCATAGAACCGGGAGGTGATGTCCAAGTCATC--T---GGT-------CAGTCCAGTTTCTCCTTTTGCACGTCAAGGATCAGACCCCAAGAGGCCAAGGGATTAGTGGGAACCCTTCTTCTTGCCTTCACATCCATCTCTCAGT------------CTTTCtttcctgtcacttatag--t---tttctttcacttc-tctctttcct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14013064 217 - 49578535 aaaaaTTCATGTATTTCGTTATGACTGT--GAAACATTATAGAAACGGGAGGCGATGTGCCCGTCATC--A---GAT-------CTGTCCAGTCTCACCGTGTGCACATCAAGGGTCAGACCCCACGAGGCCAAGGGCTCAGCAGGAACCCTTCTTCCTGCCTTCACGTCCATGTCTCAGT-----------CCTCTCTTTCCTGTCACTGACAG--TGTGTGTTTTTCATTTC-TCTCTTTTCT i calJac3.chr19 I 308 C 0 s mm10.chr1 178643991 215 + 195471971 ACAAATCTATCCATTTGTCTGTAGTCtcaaaaaatatcctcgaactggaaggcgactttgaaatcatcctt---agcca-atttcagtctgatttctctctttgcagatccagaa-cacgcctcaagaggccctgtgactttcagggtcCTTGCCTCACCCCCTGGTCACC----CTCAGT------------CTTTGTTTCTTCTC-----CAGCCT---CTTCTGGTGTCTC-TCTCCTTTCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36219822 234 + 80974532 AAAAGTGCATGTAGCTATCAGGAATTGG--AAAATGTCATATAACTGGATGGTGGCTTGAAAGTCACC--TTTGGGCCAGATTCCAGGCCATTCCCTCCCTTTGCAGGTGGAGAACCAGGTACTAAGAGGCCAAGTAATGAGTGGGAACCC--CTCCCTGCCTTCACGTTCACCACTCTCTCCCACACGTTCCCTTCATTTCTTATCTCTTCCCA--C---CCctttttcctacatttcttttct i canFam3.chr7 C 0 I 131 a score=814882.000000 s hg38.chr1_KI270759v1_alt 21295 273 + 425601 TTTCCTACTCCTTACCATCTGAAGAACTG-AAAAAATTATTCCAGGTTCAGCAATGTTggaaccaagttttgtaaacggacctaagccttttacaat-----ctggggga------ccttctttaggaaatggaacacagatgaccatgtatacatgttgctgg-cgcccctcctatggctttggaaggcacccaggcaggtgaggagccctgaatctcgagcttcctttagctttacagtgattcagtctctgGTTAGGAC-CATTACGATTTCTTTCT-TTATTTC s panTro4.chr1 224760596 274 + 228333871 TTTCCTACTCCTTACCATCTGAAGAACTG-AAAAAATTATTCCAGGTTCAGCAATGTTggaaccaaattttgtaaatggacctaagccttttacgata----ctggggga------ccttctttaggaaatggaacacagatgaccatgtatacatgttgctgg-cgcccctcctatggctttggaagggacccaggcaggcgaggagccctgaatctcgagcttcctttagctttacagtgattcagtctctgGTTAGGAC-CATTACGATTTCTTTCT-TTATTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226125832 273 - 229942017 TTTCCAACTCCTTACCATCTGAAGAACTG-AAAAAATTATTCCAGGTTCAGCAATGTTggaaccaagttttgtaaacggacctaagccttttacaat-----ctggggga------ccttctttaggaaatggaacacagatgaccatgtatacatgttgctgg-tgcctctcctgtggctttggaagggacccaggcaggtgaggagccctgaatctcgagcttcctttagctttacagtgattcagtctctgGTTAGGAC-CATTACGATTTCTTTCT-TTATTTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140014965 275 - 143122389 TTTCCTACTCCTTACCATCTAAAGAACTGAAAAAAATTATTCCAGGTTCAACAATGTTggaaccaagtcttgtaaacggacctaagccttttacaat-----ctggggga------ccttcttcaggaaatggaacatagatgaccatgtatacatgttgctgg-cccccctcccgtggctttggaagggacccaggcaggtgaggagccctgaatctcgagcttcctttcgctttacagtcattcagtcactgGTTAGGAC-CATTACGATTTCTTTTTCTTATTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16733003 269 - 229590362 TTTCCTACTCCTTACAATCTGATGAACTG-AAAAAGTTATTCCAGGTTCAGCCATGTTggaaccaagttttgtaaaaggacctaagccttttacaat-----ccggggga------ccttctttaggaaatggaacacagatgaccgtgtacacgtgttgctgg-ggcccctcccgtggctttggaagggacccaggcaggtgtggacccctgaatctcgagcttcctttagctttgcagtgattcagtctctgGTTAGGAC-CATTACGATTTCT-----TTCTTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223493172 269 - 227556264 tttcctactccttACAATCTGATGAACTG-AAAAAGTTATTCCAGGTTCAGTCATGTTggaaccaagttttgtaaaaggacctaagccttttacaat-----ctggggga------ccttctttaggaaatggaacacagatgaccgtgtacacatgtttctgg-ggcccctcccgtggctttggaagggacccaggcaggtgtggacccctgaatctcgagcttcctttagctttgcagtgattcagtctctgGTTAGGAC-CATTACGATTTCT-----TTATTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16545278 269 - 220367699 tttcctactCCCTACAATCTGATGAACTG-AAAAAGTTATTCCAGGTTCAGTCATGTTGGAACCAAGTTTTGTAAAAGGACCTAAGCCTTTTACAAT-----CTGGGGGA------CCTTCTTTAGGAAATGGAACACAGATGACCGTGTACACGTGTTGCTGG-GGCCCCTCCCGTGGCTTTGGAAGGGACCCAGGCAGGTGTGGACCCCTGAATCTCGAGCTTCCTTTAGCTTTGCAGTGATTCAGTCTCTGGTTAGGAC-CATTacgatttct-----ttctttc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82344583 269 + 85787240 tttcctactccttACAATCTGATGAACTG-AAAAAGTTATTCCAGGTTCAGCCATGTTggaaccaagttttgtaaaaggacctaaaccttttacaat-----ccggggga------ccttctttaggaaatggaacacagatgaccttgtacacgtgttgctgg-ggcccctcccgtggctttggaagggacccaggcaggtgtggacccctgaatctcgagcttcctttagctttacagtgattcagtctctgGTTAGGAC-CATTACGATTTCT-----TTATTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14013281 271 - 49578535 TTTTCTGCTCCTTACAATCTGAAGAAGTG-AAAACACGATTCCGGGCTCGGCAGCGTTGGAACCA--TTTTGTAAAAGGACCTAAGCGTTTTACGAC-----CTGGGGCA------CCTTCTTTAGGAAATGGAATGcagatggccatgtatacacgttgctgg-gacccctcccgtggcctcggaggggacccaggcagctgaggagccttgaatctccagctcccttcagctttacggtgattcagtctctgGTTAGGAC-CATTATGATTTCTTTCT-TCATTTC i calJac3.chr19 C 0 I 305 s mm10.chr1 178644206 270 + 195471971 CTCCTCATTGGTTACACTCTGAAGGGAAA-GCACATGGATGTTGAGACCAGCCAC---AGAAGCAAATTTCGTGA--GCTCTGAAGCCTTAGATAACAGGAGCTGGGAGGGTGAGTGCTTTTCCAAGAAGCAGGCTGCGG--GATGCTATGCCCATATTGCTGGATTCCCCACTCCAGGCACTGGGCCAG-CCCAGGCA-------AACCAGGGGTCTGCAGCTTCCGTGACCCTTTCGGTGATTCTGTCTCTGGTTAGGACTCATTAT-ATTTCTTCCT-TCATTCC i mm10.chr1 C 0 C 0 e canFam3.chr7 36220056 131 + 80974532 I a score=556101.000000 s hg38.chr1_KI270759v1_alt 21568 208 + 425601 -----CCCCTTACTTATGCCCTATATGAAATGAAACAGATGTGAGTGTTTGAATCAAAAAGACTTCCCTGATGTAGTGGTCTCATTTTAGATGCTCAGAGC--ATAGAATAAGTGGCAGCAGACCTTACTTGTTCCATCTGGTTTTTGCATAGACTGCTCGAGTTGTTTTTCCTTTCTCATTTGTTTTCCTCCCTTGCAT------------------------------------TTTGGTCTGTCTGC-T s panTro4.chr1 224760870 208 + 228333871 -----CCCCTTACTTATGCCCTATATGAAATGAAACAGATGTGAGGGTTTGAATCAAAAAGACTTCCCTGATGTAGTGGTCTCATTTTAGATGCTCAGAGT--GCAGAATAAGTGGCAGCAGACCTCACTTATTCCATCTGGTTTTCGCATAGACTGCTCGAGTTGTTTTTCCTTTCTCATTTGTTTTCCTCCCTTGCAT------------------------------------TTTGGTCTGTCTGC-T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226126105 210 - 229942017 -----CCCCTTACTTATGCCCTATATGAAATGAACCAGATTTGAGGGTTTGAATCAAAAAGCCTTCCTTGATGTAGTGGTCTCATTTTAGATGATCAGAGCATGCAGAATAAGCGGCAGCAGACCTTACTTATTCCATCTGGTTATTGCAGAGGCTGCTCGAGTTGTTTTTCCTTTCTCATTTGTTTTCCTTGCTTGCAT------------------------------------TTTGGTCTGTCTTC-T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140015240 210 - 143122389 -----CCCCTTACTTATGCCCTGTATGAAATGAACCAGATTTGAGGGTTTGAATCAAAAAGTCTTCCTTGATGTAGTGGTCTCATTTTAGAGGATCAGAGCAGGCAGAATAAGTGGCAGCAGAGCTTACTTATTCCATCTGGTTGTTGCATAGACTGCTCGAGTTGTTTTTCCTTTCGCATTTGTTTTCCTGTCTTGCAT------------------------------------TTTGGTCTGTCTTC-T i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16733272 210 - 229590362 -----CTCCTTACTTATGCCCTATATGAAACGAACCAGATTTGAGGGTTTCAGTCAGAAAGCCTTCCTTTATGGAGTGGGCTCCTTTTGGATGATCAGAGCACGCAGAATACGTGGCAGCAGACCTTACTTGTTCCATCTGGTCATGGCACTGATTGCTCGCGTGGTTTTTTCTTTCTCATTTGTTTTCTTCCCTTGCGT------------------------------------TTTGGTCTCTCCCC-T i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223493441 210 - 227556264 -----CTCCTTACTTATGCCCTATATGAAACGAACCAGATTTGAGGGTTTCAGTCAGAAAGCCTTCCTTCATGGAGTGGCCTCCTTTTGGATGATCAGAGCACGCAGAATACGTGGCAGCAGACCCTACTTATTCCATCTGGTCATGGCACTGATTGCTCGCGTGGTTTTTTCTTTCTCATTTGTTTTCTTCCCTTGCGT------------------------------------TTTGGTCTCTCCTC-T i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16545547 210 - 220367699 -----ctccttactTATGCCCTATATGAAACGAACCAGATTTGAGGGTTTCAGTCAGAAAGCCTTCCTTTATGGAGTGGCCTCCTTTTGGATGATCAGAGCACGCAGAATACGTGGCAGCAGACCTTACTTATTCCATCTGGTCATGGCACTGATTGCTCGCgtggttttttctttcttatttgttttcttcccttgcgT------------------------------------TTTGGTCTCTCCTC-T i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82344852 210 + 85787240 -----CTCCTTACTTATGCCCTATATGAAATGAACCAGATTTGAGGGTTTCAATCAGAAAGCCTTCCTTTATGGAGTGGTCTCCTTTTGGATGATCAGAGCATGCAGAATACATGGCAGCAGACCTTACTTATTCCATCTGGTTATGGCATTGATTGCTCGCGTGGTTTTTTCTTTCTCATTTGTTTTCTTCCCTTGCGT------------------------------------TTTGGTCTCTCCTC-T i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14013857 204 - 49578535 -----CCCCTTACTTATGCCTCATAGGAAATTAAACAGATTTGAGGGTTTGAATGGAAAAGGCTTTCTTTATGTAGTGCTACCATTTTAGATGATCAGAGCATGCAGGATAAAAGGCA-CAAGCCTTACTTGTCCCATCCGGTTATTGCATCGATT----GAGTTGTTTTT-CTTTCTCATTTGCTTTCCTCCCCTGCGT------------------------------------TTTGTACTCTCCTC-T i calJac3.chr19 I 305 C 0 s mm10.chr1 178644476 199 + 195471971 CACCTTTCCCCATTAGTTTCCTT------ATTAAACACACTTGAGCATTTGAATCTGAAA-CCTTCTT----------------------------------------------GGAAGCAAGCCTTCATCGTTCCATTTGGTTATCACATTGGCTGCCTTACTTGTGTTTCCTGTCTCACCTGTTTTCCTCCCTTGGGTGTTTTGTTGTTGTTATTGTTGGTTTTTGTTTGTTTGTTTGGTCTGTCCTCAT i mm10.chr1 C 0 C 0 e canFam3.chr7 36220056 131 + 80974532 I a score=2728583.000000 s hg38.chr1_KI270759v1_alt 21776 862 + 425601 CCCCAAACTTTTAGCTA-TGAAACATCTCTAGAATTCGACATCTGTCAGAGGAGGCAGCGGAAGTTCTTTCTCTGGGATCCATGAGTCCTGACTCCCCTGATACTGTGTGCTGAGAGAGGGTT---TTGTTTTCATAATTATGACAATTCCCATGTATTGAATGCTTCCTACATGCCA-------GATATTTCCAG------------------------AGCTCTGTGTCCCTGGAAGAGTCAAGAACCACTGT-TTATAGCATTGAGAAGGAAAGAGTCTAGCCTCTGACATCTTTTCTTCTAAAATGACTGCAACACATGGACATATTTTTAGCTATTTTTTCC--ATGAAATGTATTTTCTAATGACTTAAGACATTAGATCAAT-------GGGAAAAGA---GAGCGT-TTATGTTTTTATGAAGGTAATATTTTCAGTGGCAAAATGAGCTTTATCAGACCTCAGGAACTTGTGACTTCCAGAAAACAAGAATGGTTCTGACCTGGGATCGTGAGAATGTCTTTATCCTAGACATGCCAATCCACACTTAGCCAGTGTGAAGGGAAGAGTCTGCACTT-AGCCAGCATGAAGGGAAGAGTGGCAGAGA-G-GGGACTATCTGAGTCCTGTCACGGCCTGTCAGGAGAGTGACAGGTGAGGGTGGGCAGGAGGTCTCCGAATGAACTGCTTTGCTGGTAGG-CTGTGTTTCTGTGTTTAGCTGAGGAGAGGGC--GGGAGAGAGACCCAGGCTGGGAGGTGGGGGTGCCTGAGCC-------TCCTGTGCCATTTGGAGCATGTCATTATGGGGGAGTCACTTAT-TTTGCAGGGGG-------GAGGGGGG---TCCCAGGCCTAACATTTGTAAA--ATTAGGGAATATGCTGG------GA--------------------------CTAAGGGTTCGTTGTGGCCTGCAGTCTGTTTCT-------- s panTro4.chr1 224761078 864 + 228333871 CCCCAAACTTTTAGCTA-TGAAACATCTCTAGAATTCAACATCTGTCAGAGGAGGCAGCGGAAGTTCTTTCTCTGGGATCCATGAGTCCTGACTCCCCTGATACTGTGTGCTGAGAGAGGGTT---TTGTTTTCATAATTatgacaattcccatgtattgaatgcttcctacatgcca-------gatactTCCAG------------------------AGCTCTGTGTCCCTGGAAGAGTCAAGAACCACTGT-TTATAGCATTGAGAAGGAAAGAGTCTAGCCTCTGACATCTTTTCTTCTAAAATGACTGCAACACATGGACATATTTTTAGCTATTTTTTCC--ATGAAATGTATTTTCTAACGACTTAAGACATTAGATCAAT-------GGGAAAAGA---GAGCAT-TTATGTTTTTATGAAGGTAATATTTTCAGTGGCAAAATGAGCTTTATCAGACCTCAGGAACTTGTGACTTCCAGAAAACAAGAATGGTTCTGACCTGGGATCGTGAGAATGTCTTTATCCTAGACATGCCAATCCACACTTAGCCAGTGTGAAGGGAAGAGTCCGCACTT-AGCCAGCATGAAGGGAAGAGCGGCAGAGA-G-GGGACTATCTGAGTCCTGTCACGGCCTGTCAGGAGAGTGACAGGTGAGGGTGGGCAGCGGGTCTCCGAATGAACTGCTTTGCTGATAGGGCTGTGTTTCTGTGTTTAGCTGAGGAGAGGGC--GGGAGAGAGACCCAGGCTGGGAGGTGGGGGTGCCTGAGCC-------TCCTGTGCCATTTGGAGCATGTCATTATGGGGGAGTCACTTAT-TTTGCAGGGGG-------GAGGGGGG--GTCCCAGGCCTAACATTTGTAAA--ATTAGGGAATATGCTGG------GA--------------------------CTCAGGGTTCGTTGTGGCCTGCAGTCTGTTTCT-------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226126315 834 - 229942017 CCCCAAACTTTTAGCTA-TGAAACGTCTCTAGAATTCCACATCTGTCAGAGGAGGCAGCGGAAGTTCTTTCTCTGGGATCCATGAGTCCTGACTCTCCTGATACTGTGTGCTGAGAGAAGGTC---TTGTTTTCATAATTATGACAATTCCCATGTATTGAATGCTTCCTACATGCCA-------GATATTTCCAG------------------------AGCTCTGTGTCCCTGGAAGAGTCAAGAACCACTGT-TTATAGCATTGAGAAGGAAAGAGTCTAGCCTCTGACATCTTTTCTTCTAAAATGACTGCAACACATGGACATACTTTTAGCTATTTTTTCC--ATGAAATGTATTTTCTAATGCCTTAAGACATTAGATCAAT-------GGGAAACGA---GAGCAT-TTATGTTTTTATGAAGGTAATATTTTCAGTGGCAAAATGAGCTTTATCAGACCTCAGGAACTTGTGACTTCCAGAAAACAATAATGGTTCTGACCTGGGATGGAGGGAATGTCTTTATCCTAGACATGCCAATCCA-----------------------------CACTT-AGCCAGCTTGAAGGGAAGAGTGGCAGAGA-G-GGGACTATCTGAGTCCTGTCACGGCCTGTCAGGAGAGTGACAGGTGAGGGTGGGCAGGGGGTCTCCGGATGAATTGCTTTGCTGATAGGGC--TGTTTCTGTGTTTAGCTGAGGAGAGGGT--GGGAGAGAGACCCAGGCTGGGAGGTGGGGGTGCTTGAGCC-------TCTTGTGCCATTTGGAGCATGTCATTATGGGGGAGTTGCTTAT-TTTGC-GGGCG-------GAGGGGGGTGGTCCCAGGCCTAACATTTGTAAA--ATTAGGGAATATGCTGG------GA--------------------------CTAAGGGTTCTTTGTGGCTTGCAGTCTGTTTCT-------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140015450 833 - 143122389 CCCCAGACCTTTAGCCA-TGAAACATCTCTAGAATTCGACATCTGTCAGAGGAGGCAGCAGAAGTTCCTTCTCTGGGATCCGTGAGTCCTGACTCCCCTGATGCTGTGTGTTGAGAGAGGGTC---TTCTTTTCATAATTATGACAATTCCCATGTATTGAACGCTTCCTACATGCTA-------GATGTTTCCAG------------------------AGCTCTGTGTCCCTGGAAGAGTCAAGAAGCACTGT-GTGTAGCATCGAGAAAGAAAGAGTCTAGCCTCTCACATCTTTTCTTCTAAAATGACTGCAACACATGGACATATTTTTAGCTATTTTTTCC--ATGAAATGTGTTTTCTAATGCCTT-AGACATTAGATCAAT-------GGGAAACGA---GAGCAT-TTATGTGTTTATGAAGGTAATATTTTCAGTGGCACAATGAGCTTTATCAGACCTCAGGAACTTGTGACTTCCAGAAAACAATAATGGTTCCAACCTGGGATCGAGGGAATGTCTTTATCCTAGACATGCCAGTCTG-----------------------------CACTT-AGCCAGCTTGAAGGGAAGAGTGGCAGAGA-G-GGGACTATCTGAGTCCTGTCACGGCCTGTCAGGAGAGTGACAGGTGAGGGTGGGCAGGGGGTCTCCGAATGAACCACTTTGCTGATAGGGCTGTGTTCCTGTGTTTAGCTGAGGAGAGGGC--GGGTGAGAGACCCAGGCTGGGAGGTGGGGGTGCCTGAACC-------TCCTGTGCCATTTGGAGCATGTCATTGTAGGGGAGTCACTTAT-TTTGTGGGGGG-------GGGAGGGG---TCCCAGGCCTCACATTTGTAAA--ATTAGGGAATATGCTGG------GA--------------------------CTAAGGGTTCCTTGTGGCCTGCAGTCTGTTTCT-------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16733482 825 - 229590362 CCCCAAACCTTTAGTTA-TGAAACATCTCTGGAATTCGACATCTGTCAGAGGAGGCAGCAGCAGCTCTTTCTCCGCGATCCATGAGGCCTGACTCCCCTGATAC--TGTGCTGAGAGAGGGCC---TTGTTTTCATAATGATGACCATTCCCCTGTATTGAATGCTTCCTGCACGCCA-------GATTTTTCCAG-------------------------GCTTGGTGACCCTGGAAGAGTCCAGAACCACTGT-TTGTAGCATTGGGAAGGAAAGAGTCTAGCCTCTGACATCTTTTCTTCTAAAATCACTGCAGCACATGGACACATGTTTAGCTATTTTTTCC-TATGAAATGTACTTTCTAATGCTTGAAGACATTACATCAAT-------GGGAAAAGA---CAGCAT-CTATGTTCTTACGAAGGTAATATTTTCAGTGGCAAAATGAGCTTTATCAGACCCCAGGAACTTGTGACTTCCAGAAAACAATAATGGTTCTGACCTGGGACCGAGGGAACGTCTTTATCCTAGACATGCCAGTCCA-----------------------------CACTT-AGCCAGCTTGAAGGGAAGAGTGGCAGAGA-G-GGGACTATCTGAGTCCTGTCACGGCCTGTCAGAAGAGTGACAGGTGAGGGTGGGCAGGGGGCCTCCGAGTGAGCTGCTTTGCTGATAGGGCTGTGTTTCTGTGTTTAGCTGAGGAGAGGGC--AGGAGAGAGACCCAGGCTGGGAGGTGGGGGCGCCTGAGCC----------TGTGTCATTTGGAGCATGTCATTATGGCGGAGCCACTTAT-TTTGT---GTG-------TGGGAAGG---TCCCAGGCCTACCATTTGTAAA--ATTAGGGAATATGCTGG------GA--------------------------CTAAGGGTTCCTTGTGGCCTGCAGTCTGTTTC--------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223493651 825 - 227556264 CCCCAAACCTTTAGCTG-TGAAACATCTCTGGAATTCGACATCTGTCAGAGGAGGCAGCAGCAGCTCTTTCTCTGCGATCCATGAGGCCTGACTCCCCTGATAC--TGTGCTGAGAGAGGGCC---TTGTTTTCATAATGATGACCATTCCCCTGTATTGAATGCTTCCTGCATGCCA-------GATTTTTCCAG-------------------------GCTTGGTGACCCTGGAAGAGTCCGGAACCACTGT-TTGTAGCATTGGGAAGGAAAGAGTCTAGCCTCTGACATCTTTTCTTCTAAAATGACTGCAGCACATGGACACATGTTTAGCTATTTTTTCC-TATGAAATGTACTTTCTAATGCTTGAAGACATTACATCAAT-------GGGAAAAGA---CAGCAT-TTATGTTCTTACGAAGGTAATATTTTCAGTGGCAAAATGAGCTTTATCAGACCCCAGGAACTTGTGACTTCCAGAAAACAATAATGGTTCTGACCTGGGACCGAGGGAATGTCTTTATCCTAGACATGCCAGTCCA-----------------------------CACTT-AGCCAGCTTGAAGGGAAGAGTGGCAGAGA-G-GGGACTATCTGAGTCCTGTCACAGCCTGTCAGGAGAGTGACAGGTGAGGGTGGGCAGGGGGCCTCCGAGTGAGCTGCTTTGCTGATAGGGCTGTGTTTCTGTGTTTAGCTGAGGAGAGGGC--GGGAGAGAGACCCAGGCTGGGAGGTGGGGGCGCCTGAGCC----------TGTGTCATTTGGAGCATGTCATTATGGCGGAGCCACTTAT-TTTGT---GTG-------TGGGAAGG---TCCCAGGCCTACCATTTGTAAA--ATTAGGGAATATGCTGG------GA--------------------------CTAAGGGTTCCTTGTGGCCTGCAGTCTGTTTC--------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16545757 825 - 220367699 CCCCAAACCTTTAGCTG-TGGAACATCTCTGGAATTCGACTTCTGTCAGAGGAGGCAGCAGCAGCTCTTTCTCCGCGATCCATGAGGCCTGACTCCCCTGATAC--TGTGCTGAGAGAGGGCC---TTGTTTTCATAATGATGACCATTCCCCTGTATTGAATGCTTCCTGCATGCCA-------GATTTTTCCAG-------------------------GCTTTGTGACCCTGGAAGAGTCCAGAACCACTGT-TTGTAGCATTGGGAAGGAAAGAGTCTAGCCTCTGAcatcttttcttctaaaatgacTGCAGCACATGGACATATGTGTAGCTATTTTTTCc-tatgaaatgtattttctaatgCTTGAAGACATTACATCAAT-------GGGAAAAGA---CAGCAG-TTATGTTTTTACGAAGGTAGTATTTTCAGTGGCAAAATGAGCTTTATCAGACCCCAGGAACTTGTGACTTCCAGAAAACAATAACGGTTCTGACCTGGGACCGAGGGAATGTCTTTATCCTGGACATGCCAGTCCA-----------------------------CACTT-AGCCAGCTTGAAGGGAAGAGTGGCAGAGA-G-GGGACTATCTGAGTCCTGTCACAGCCTGTCAGGAGAGTGACAGGTGAGGGTGGGCAGGGGACCTCGGAGTGAGCTGCTTTGCTGATAGGGTtgtgtttctgtgtttggctGAGGACAGGGC--GGGAGAGAGACCCAGGCGGGGAGGTGGGGGCGCCTGAGCC----------TGTGTCATTTGGAGCATGTCATTATGGCGGAGCCACTTAT-TTTGT---GTG-------TGGGGAGG---TCCCAGGCCTACCATTTGTAAA--ATTAGGGAATATGCTGA------GA--------------------------CTAAGGGTTCCTTGTGGCCTGCAGtctgtttc--------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82345062 826 + 85787240 CCCCAAACCTTTAGCTA-TGAAACATCTCTGGAATTCGACTTCTGTCAGAGGAGGCAGCAGCAGCTTTTTCTCCGGGATCCATGAGGCCTGACTCCCCTGATAC--TGTGCTGAGAGAGGGTC---TCGTTTTCATAATGATGACCATTCCCATGTATTGAATGCTTCCTGCATGCCA-------GATATTTCCAG-------------------------GCTTTGTGACCCTGGAAGAGTCAAGAACCACTGT-TTGTAGCATTGGGAAGGAAAGAGTCTAGCCTCTGACATCTGTTCTTCTAAAATGACTGCAGCACATGGACATACGTTTAGCTATTTTTTCC-TGTGAAATGTATTTTCTAATGCTTGAAGACATTACATCAAT-------GGGAAAAGA---CAGCGT-TTATGTTTTTACGAAGGTAATATTTTCAGTGGCAAAATGAGCTTTATCAGACCTCAGGAACTTGTGACTTCCAGAAAACAATAATGGTTCTGACCTGGGACCGAGGGAATGTCTTTATCCTCGACATGCCAATCCA-----------------------------CACTT-AGCCAGCTTGAAGGGAAGAGTGGCAGAGAGG-GGGACTATCTGAGTCCTGTCACGGCCTGTCAGGAGAGTGACAGGTGAGGGTGGGCAGGGGGCCTCCGAGTGAGCTGCTTTGCTGATAGGGCTGTGTTTCTGTGTTTAGCTGAGGAGAGGGC--GGGAGAGAGACCCAGGCTGGGAGGTGGCGGCGCCTGAGCC----------TGTGTCATTTGGAGCATGTCATTATGGCGCAGCCACTTAT-TGTGT---GTG-------TGGGGAGG---TCCCAGGCCTAACATTTGTAAA--ATTAGGGAATATGCTGG------GA--------------------------CTAAGGGTTCCTTGCGGCCTGCAGTCTGTTTC--------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14014061 838 - 49578535 CCCCAGACCTTGAGCTAGTGAAACCTCTCTAGGATTGGACATCTGTCAGAGGCTGCAGCGACAGCTCTTGATCTG-GATCCATGAGTCCTGACTCCCC-GATACCGTGTGCTGAGAGAGGGTC---TTGTTTTCATAATTACGACAGTTCCCATGTGCTGAACGCTTCCTACGTACCA-------GGTAGGTCCAG------------------------GGCTCTGTCACCCCGGAAGAGTCAAGA---CCTGTGTTACAGCACTGAGAAGGAAAGAGTCCAGCCTCTGATGGCTTTTTTTCTAAAATGACTGCAACACATGGACATATTTTTAGCTCTTTTTCCCCCATGAAATGTATTTTCTAATGCCTTAAGACATTAGATCAAT-------GGGAAAAGA---GAGCAT-TTATGTTTTTATGAAGGTAATATTTTTAGTGGCAAAATGAGCTTTATTAGACCTCGGGAACCTGTGACTTCCAGAAAACAAGAATGG-TCTGAGCTGGAATTGAAGGAATGTCTTTCTCCTAGACATGCCAGTCAA-----------------------------CATGT-AGCCAGCTCTAAGGGAAGAATGGCAGAGA-G-GGGACTATCTGAGTCCTGCCACAGCCTGTCAAGAGAGTGACAGGCGAGGGTGGGCAGGGG--CTCGGCAAGAGCCGCTTTGCTGATGGGGCTGTGTTTCTGCCTTTGGCTGAGGAGAGGGC--AGGAGAGAGACCCAGGCTGGGAGCCGGGCGTGCCTGAGCC-------TCCTGTGTCATTTGGAGCATGTCATTGTGGGGGAATCACTTATCTTTGTGGGGTGGCGGGGCGGGGGGGG---GGCAAGGCCTAACATTTGTGAA--AATAGGGACTAGGCTGG------GA--------------------------CTAAGGGTTCCTTCTAGCCTGCAGTCTGCTTCC-------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178644675 821 + 195471971 CTCCCAACTTCT------AGAGCCATCTCTGGAAATCATCACTTGGCAGAGG--GCAGAGGAAG-------------------GGAGCCTGACTCTC--AGTGCTGTGTGCCAAGAAAGGATC---TTCTTCCCATTATGGCAACAATTCCCGTGCATCAGACATCTCTTAGACTTCAGTGTGTCGGCTTCACCGG--------------GACCTCAGGGGGCTCTGGGG-TCTGGAAGAATCAAGAGCCACTGTCTTGCAACACTGATCATGAAGGAGCCTAGCCACTGACA-----TCTTCCACAACAACTGCAGAGCACAAGCATGCTTTAGGCCATTTTTTCT-AATTAAATGT--CTTCTTGCACCTTAGGACCTTAGAACAAT-------GCAAAACAAAATGAGCAT-GCACACTTTCTCAAGGACAATACTTTCTGTGGCAACACGGGTCTTATCAGACATCAAGAGCATGTGACGCCTAGCAAGCAGTAGTGG-TCTATCCTGGGACTGAAGGGATATCTTTATCTTAGACATGCCGAAGAG-----------------------------CACTT-----------GAGGGGAGAGTGCCAGGGA-G-GAGACTATCTGGACCTTGTCAGAGCCTGTCAGGAGGGTGACAGATGAGAGC-TGCAGGGGTCTCCTG--TGAGAAACCCTGATGACAGAGC--------TATGTTTAGCTAAAGATGCTGA--AGGGGAGGGGTCTCGCTTGGGGGGCTGGGG-ACCTTAGCTGG-TCACTCTTTTGTCATTTGGTGCATGGCATAATGGGAGAGTCAGTTAC-TCCTT----TG-------------GC---CATCAGACTCAGCAACTGTAAACTGTCAGTGGTTCTGCCAG------AAATCCGTTCAGAGGGTTCCTGCAAGCTCCCAGTGTCCTTTGCAGAGTTCAGTCTGTTTCT-------- i mm10.chr1 C 0 I 209 s canFam3.chr7 36220187 844 + 80974532 CTCCTAACTTGTAGCTA-CGACCTAACCCTAGAAGTCCACATTTGCTGGAGTA--CAGTAGGGGCTCTTGACCTGGGATTCATGAATCCCAGCTTCGTTGATACTGTGTGCTGAGAAAGGGACTTGTTGTTTTCATAATTTGGATGATTCCCATGTGCCGAAGGCTTCCAGCATGCCA-------GGTGCCGCCTGATTCGCCTCACCAGGATCTCAGAGGGCTCCATGACCCTGGAAGAGTCCAGAACCACTATTCCAAAACATTGACTGTGAAGGAGTCTAGCCTCTGACATCTTTTCTTCTTAGATGACTATAA-ACATCTACATGTTTTTGGCTATTTTTTTC-AATTAAGTGTACTTGCCAGGGCTTGAAGACACTAGACCAATGTGGAGGGGGAAAAGC---GAGCATGTCATGTGTTTATGAAGGTAGTGTCTTCAGTGGTAGAG-----TTTATCAGACATCAAGAACATG----------------ATAATGA-GGTAGTCAGGGACTGAAGGAATGCCTTGATCCTTGACACAGAAAGAGA-----------------------------CCCTTCAGCCAGGTT-ACATGAAGAGTGGCATTGA-GTGGGACCATCTG-GTCCTCTTG-GAACTGGCAGGAGAGTGACAGGTGGCAGAGGGTAGGGAGGTCCTGAGTGAGCCGCTCCAGTGACAGGGC--------TGTGCATAGCTGAGGATGGTGCATAGGGGAGTGGCCCCAACTGG--GGCAGGAG-ACCTGGTTTTGCTCACTCCTGTGCCACCTGG---ATGTCATAGTGGAGGAGTCATTGAT-TCCTT---TTC-------TGAA-------TCTCAGGCCTAACACTTACAAT--AAAGGGGATTATACTAAGGAGTTGA--------------------------ATAAGGA---GTTGAAGCCCTTAGTCTGTTGACTGCTTTCA i canFam3.chr7 I 131 C 0 a score=36032.000000 s hg38.chr1_KI270759v1_alt 22638 12 + 425601 ATTTATTTATTC s panTro4.chr1 224761942 12 + 228333871 ATTTATTTATTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226127149 12 - 229942017 ATTTATTTATTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140016283 12 - 143122389 ATTTATTTATTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16734307 9 - 229590362 ---TATTTATTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223494476 9 - 227556264 ---TATTTATTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16546582 9 - 220367699 ---tatttattc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82345888 9 + 85787240 ---TATTTATTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14014899 12 - 49578535 ATCTATTTACTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36221031 12 + 80974532 ATCTGTTTAttc i canFam3.chr7 C 0 I 537 e mm10.chr1 178645496 209 + 195471971 I a score=21416.000000 s hg38.chr1_KI270759v1_alt 22650 8 + 425601 ATACTCAT s panTro4.chr1 224761954 8 + 228333871 ATACTCAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226127161 8 - 229942017 ATACTCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140016295 8 - 143122389 ATATTCAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16734316 8 - 229590362 ATATTCAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223494485 8 - 227556264 ATATTCAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16546591 8 - 220367699 atATTCAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82345897 8 + 85787240 ATATTCAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14014911 8 - 49578535 AGAGTCAT i calJac3.chr19 C 0 C 0 e mm10.chr1 178645496 209 + 195471971 I e canFam3.chr7 36221043 537 + 80974532 I a score=342494.000000 s hg38.chr1_KI270759v1_alt 22658 109 + 425601 AAACATAGATCTCTAATATAGGCCAAGATTTTGAAAGAATTAGTAGTTGCAATTTCACCTTGTAAGACTTTCTCTTTTAGGTACCTTATATTAGTTTTACTTGTTAGTT s panTro4.chr1 224761962 109 + 228333871 AAACATAGATCTCTAATATAGGCCAAGATATTGAAAGAATTAGTAGTTGCAATTTCACCTTGTAAGACTTTCTCTTTTAGGTACCTTATATTAGTTTTACTTGTTAGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226127169 109 - 229942017 AAACATAGATGTCTAATATAGGCCAAGAGATTGAAAGAATTAGTAGTTGCAGTTTCACCTTGTAAGACTTTCTCTTTTAGGTACCTTATATTAGTTTTATTTGTTAGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140016303 105 - 143122389 AAACATAGATCTCTAATATAGGCCAAGATATTGAAAGAATTAGTAGTTGCGATTTCACCTTGTAAGACTTTCTCTTTTAGGAACCTTATATTAGTT----TTGTTAGTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16734324 109 - 229590362 AAACATAGATCTCTCATACAGGCCAAGATATTGAAAGAATTAGTAGTTGCAATTTCTCCTTGGAAGACTTTCTCTTTTAGGTACCTTATATTAGTTTTATTTTTTAGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223494493 109 - 227556264 AAACATAGATCTCTCATACAGGCCAAGATATTGAAAGAATTAGTAGTTGCAATTTCTCCTTGGAAGACTTTCTCTTTTAGGTACCTTATATTAGTTTTATTTTTTAGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16546599 109 - 220367699 AAACATAGATCTCTCATACAGGCCAAGATATTGAAAGAATTAGTAGTTGCAATTTCTCCTTGGAAGACTTTCTCTTTTAGGTACcttatattagttttattttttagtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82345905 109 + 85787240 AAACATAGATCTCTCATATAGGCCAAGATATTGAAAGAATTAGTAGTCGCAATTTCTCCTTGGAAGTCTTTCTCTTTTAGGTACCTTTTATTAGTTTTATTTTTTAATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14014919 106 - 49578535 AAACATATAGCTCTGATATAGGCCAAGATATCGAAGGAGTTGGTAGTTGCCATTTCACTTTGTAAGACTTTCTCTTTTGAATACCTTGTATTCATTTTATT--TTAGT- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36221580 105 + 80974532 aactgTAGATCTCTAAGGTAGGCTGAGAT----AATGAGTTAGTAGTTTTAACTGTACTTTGTAAGTCTTTCTCTTTTGGATGTCTTGCATTTGTTTTATCTGTTAATT i canFam3.chr7 I 537 C 0 e mm10.chr1 178645496 209 + 195471971 I a score=652735.000000 s hg38.chr1_KI270759v1_alt 22767 222 + 425601 ACCCAGATATGTCAAGCATAGAGCTAAACTGAATGCCTG--------------------TGTATTTGCTGTAAGCATTGCC---------------------TGCCTTAATTCATGCTGTGA-TGTGGTGTGGTTTG-----------CGGAATTCCTAGAGTGGCCAG---TGCACCATGACCACCAACTGACAC---------------------TAGGCTC----------CTTCTAGCAAAGACCAGGGAATGTGGTGATGCCTTTAGTTG-GTTTATAAAGGACTAG--------------------------CACCCATGAGCAGGAAAG s panTro4.chr1 224762071 222 + 228333871 ACCCAGATATGTCAAGCATAGAGCTAAACTGAATGCCTG--------------------TGTATTTGCTGTAAGCATTGCC---------------------TGCCTTAATTCATGCTGTGA-TGTGGTGTGGTTTG-----------CGGAATTCCTAGAGTGGCCAG---TGCACCATGACCACCAACTGACAC---------------------TAGGCTC----------CTTCTAGCAAAGACCAGGGGATGTGGTGATGCCTTTAGTTG-GTTTATAAAGGACTAG--------------------------CACCCATGAGCAGGAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226127278 222 - 229942017 ACCCACATATGTCAAGCATAGAGCTAAACTGAATGCCTG--------------------TGTATTTGCTATAAGCATTGCC---------------------TGCCTTAATTCATGCTGTGA-TGTGGTATGGTTTG-----------CAGAATTCCTGGAGTGGCCAG---TGCACCGTGACTACCAACTGACAC---------------------TAGGCTC----------CTTCTAGCAAAGACCAGGGAATGTGGTGATGCCTTTAGTTG-GTTTGTAAAGGACTAG--------------------------CACCCATGAGCAGGAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140016408 222 - 143122389 ACCCAGATATGTCAAGCATAGAGCTAAACTGAATGCCTG--------------------TGTATTTGCTGTAAGCATTGCC---------------------TGCCTTAATTCATGCTGTGA-CGTGGTGTGGTTTG-----------CAGAATTCCTAGAGTGGCCAG---TGCACCGTGACCACCAACTGACAC---------------------TAGGCTC----------CTTCTAGCAAAAACCAGGGAATGTGGTGATGCCTTTAGTTG-GTTTATTAAGGACTAG--------------------------CACCCATGAGCAGGAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16734433 208 - 229590362 ACCCAGATGTGTCAAGCATAGAGCTAACCTGAATGCCTG--------------------TGTATTTGCTATAAGCATTGCC---------------------TGCCTTAATTCATGCTGTGA-TGTGGTGTGGTTTG-----------CAGAATTCCTGGAG-----------------TGACCACCAGCTGACAC---------------------TAGGCTC----------CTTCTAGCAAAGACCAGGGAATGTGGTGATGCCCGTAGTTG-GTTTATAAAGGACTAG--------------------------CACCCATGAGCAGGAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223494602 208 - 227556264 ACCCAGATGTGTCAAGCATAGAGCTAACCTGAATGCCTG--------------------TGTATTTGCTATAAGCATTGCC---------------------TGCCTTAATTCATGCTGTGA-TGTGGTGTGGTTTG-----------CAGAATTCCTGGAG-----------------TGACCACCAGCTGACAC---------------------TAGGCTC----------CTTCTAGCAAAGACCAGGGAATGTGGTGATGCCCGTAGTTG-GTTTATAAAGGACCAG--------------------------CACCCATGAGCAGGAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16546708 208 - 220367699 accCAGATGTGTCAAGCGTAGAGCTAACCTGAATGCCTG--------------------TGTATTTGCTATAAGCATTGCC---------------------TGCCTTAGTTCATGCTGTGA-TGTGGTGTGGTTTG-----------CAGAATTCTCGGAG-----------------TGGCCACCAGCTGACAC---------------------TAGGCTC----------CTTCTAGCAAAGACCAGGGAATGTGGTGATGCCCGTAGTTG-GTTTATAAAGGACCAG--------------------------TACCCATGAGCAGGAAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82346014 208 + 85787240 ACCCAGATGTGTCAAGCATAGAGCTAACCTGAATGCCTG--------------------TGTATTTGCTGTAAGCATTGCC---------------------CGCCTTAATTCATGCTGTGA-TGTGGTGTGGTTTG-----------CAGAATTCCTGGAG-----------------TGACCACCAGCTGACAC---------------------TAGGCTC----------CTTCTAGCAAAGACCAGGGAATGTGGTGATGCCCTTAGTTG-GTTTATAAAGGACTAG--------------------------CACCCATGAGCAGGAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14015025 213 - 49578535 ---------TGTCGAGCAGAGAGCTAAACTGAGTGCCTG--------------------TGTGTTTGCAGTAAGCGTCGCC---------------------TGCCTTCGTGCACGCTGCGG-TGTGGTATGGTTTG-----------CTTACCTCCTCGCGGGGCCAG--CTGCGCCGTGGCCACAGGCTGGCAC---------------------TAGGCTC----------CTTCTAGCAAAGACCTGGGAATGTGATGCC-CGTGTAGCTG-GCTTACAAAGGACTCA--------------------------CGCCCCTGAGCAGGAAAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178645705 327 + 195471971 acccggaagtttcagctttctatctaagctgagtgtccagtgagcctcggtgattctcctgtctctgct-----ccttgcccctccgagatggggttataggtgccaacagccacattcagt-ttttgtgtgttctgggaatccaaacccaggtcctcatggttgcacgataggcaccattaccacccactgagacatcccTTTCTTCTATTTATTTTTGTTTCTGAACATGCACCTCTAGCAGGGGTCAAGGTCTGGAGAGGT---TACAGTTGCATTTATAATGGGTTAGACTTTCTTTGTCATTAGTTACCTGGACACCTGTGTGTGAGATGG i mm10.chr1 I 209 I 108 s canFam3.chr7 36221685 207 + 80974532 -ACCAGCTGTGTTAAGCATATAGCTAGGTTGAATGCCTG--------------------TGTATGAGCTGTAGGCAT--CT---------------------GGCCTTAATTCATGCTATGTCTATGATGTGGTTCA-----------TACAGTTCCTACACTGGCCAG--CTGCCCCGTGA-----------------------------------CTGCCTC----------CTTCTAGCAAAGACCAGGAGATATGAGGATACACTTGGTTG-GTTTATAAAAGCCCAG--------------------------CTCCCACGAGGGGAAAGG i canFam3.chr7 C 0 C 0 a score=3450979.000000 s hg38.chr1_KI270759v1_alt 22989 1061 + 425601 GGCACGACACTCATTTTGGCA-------------CTGTGACCGCCCTC-----------------------CTGGTCACAACGCCTGGTCTCCACACTGGCAGGGCTGTTCTTTTACAAGGA--GGGACACAGGGTTTGAGACAGGTCCAGTTGTCGCTCATCGAGAACTCGTGAAGACAGACAGGGGAGCAGTGACCCTGGAAATCAGCTGGGAGAGTCCATTCATCCACGTAGTGAGA-C-CGTGTCTCTGT---TGCGGTTCTTATGTCCA-CCCACATTCTGTGATTCATTGTGTGTTCTTATTAGTATATTATAATC-TATTAGAGGGT--ATTTTTCTCTAA-TTTTCTGTCA-TTTTGTAGTTCTGTGC-AAAAGGCATGAAATTGTGGATTAAAATGAGGGCATCTGGATATTGCTAGAAAACACCAGCTGAATTCACAGGCTCGCAAAGAGGTCGTATGTTTGGAAAGCTTTAGCCATTGCTGTGGTTTTCTATTTTCTGGAGGTGGGGACAGG-ATAGGAGGTGGACCCTAGTCCCTAGAGACTATTTCCAA-AGTGTGTTTCCCAGTTGGGATC-AATTATTGTTTGTTGACTTGGTCTCAGGATTGGGCTGCGTTCTAACTCGAGAATTGCCAGGCCTCAGGGAAGTGTCTGCTTTTCAG-GGA-AGTCCGCCCATCATCTGCCACTAACACAAGTC--AGAGGGCCACGGCCATCACCAGTGC-TGCAAGTGGGAAGGGCAGAGTGGACTTACATAAACACCGTGGCATTCCTGCCTGCAGCTCCGGAGCTCCACCCTCAT-CGCCACTATCTCTCCTTG-GACTTGAACCACAGGCAGATGAGGCCCCAGGAATTAGTTGC------------------ACCT-GAGAG--TCTGGAAGTATAGCCCAACCCTCCATGTGTGGAAGGACAGGGTCCAGACCCCTCCCGTCCTGCTTCTGCAGTGGCTGAATGGCTGGAGGCCGCCATGACACCCCTCATacaca-ttcactcactcaccattcactcccactcTCCTGCCCC-TGCCCCTTTCCAGGCTCCCAACTCTCTCTCTCATGTGTACCTTGAAGGTTTGCTAGATGATATCATAGTAGACGCTAACGAAATCGT s panTro4.chr1 224762293 1062 + 228333871 GGCACGACACTCATTTTGGCA-------------CTGTGACCGCCCTC-----------------------CTGGTCACAACACCTGGTCTCCACACTGGCAGGGCTGTTCTTTTACAAGGA--GGGACACAGGGTTTGAGACAGGTCCAGCTGTCGCTCATCGAGAACTCGTGAAGACAGACAGGGGAGCAGTGACCCTGGAAACCAGCCGGGAGAGTCCCTTCATCCACGTAGTGAGA-C-CGTGTATCTGT---TGCGGTTCTTATGTCCA-CCCACATTCTGTGATTCATTGTGTGTTCTTATTAGTATATTATAATC-TATTAGAGGGT--ATTTTTCTCTAA-TTTTCTGTCA-TTTTGTAGTTCTGTGC-AAAAGGCATGAAATTGTGGATTAAAATGAGGGCATCTGGATATTGCTAGAAAACACCAGCTGAATTCACAGGCTCGCAAAGCGGCCGTATGTTTGGAAAGCTTTAGCCATTGCTGTGGTTTTCTATTTTCTGGAGGTGGGGACAGG-ATAGGAGGTGGACCCTAGTCCCTAGAGACTATTTCCAA-AGTGTGTTTCCCAGTTGGGATC-AATTATTGTTTGTTGACTTGGTCTCAGGATTGGGCTGCGTTCTAACTCGAGAATTGCCAGGCCTCAGGGAAGCGTCTGCTTTTCAG-GGA-AGTCCGCCCATCATCTGCCACTAACACAAGTC--AGAGGGCCACGGCCATCACCAGTGC-TGCAAGTGGGAAGGGCAGAGTGGACTTACATAAACACCGTGGCATTCCTGCCTGCAGCTCTGGAGCTCCACCCTCAT-CGCCACTATCTCTCCTTG-GACTTGAACCACAGGCAGATGAGGCCCCAGGAATTAGTTGC------------------ACCTAGAGAG--TCTGGAAGTATAGCCCAACCCTCCATGTGTGGAAGGACAGGGTCCAGACCCCTCCCGTCCTGCTTCTCCAGTGGCTGAATGGCTGGAGGCCGCCATGACACCCCTCATACACA-TTCACTCACTCACCATTCACTCCCACTCTCCTGCCCC-TGCCCCTTCCCAGGCTCCCAACTCTCTCTCTCATATATACCTTGAAGGTTTGCTAGATGATATCATAGTAGCCGCTAACTAAATCGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226127500 1062 - 229942017 GGCACGACACTCATTTTGGCA-------------CTGTGACCGCCCTC-----------------------CTGGTCACAACACCTGCTCTCCACACTGGCAGGGCTGTTCTCTTACAAGGA--GGGACACAGGGTTTGAGACAGCTCCAGTTGCCGCTCATCGAGAACTTGTGAAGACAGACAGGGGAGCAGTGACCCTGGAAATCAGCCGGGAGAGTCCATTCCTCCACGTAGTGAGA-C-TGTGTCTCTGT---TGCGGTTCTTATGTCCA-CCCACATTGTGTGATTCATTGTGTGTTCTTATTCGTATATTAGAATC-TATTAGAGGGT--AATTTTCTCTAA-TTTTCTGTCA-TTTTGTAGTTCTGTGC-AAAAGGCATGAAATTGTGGATTAAAATGAGGGCATCTGGATATTGCTAGAAAACACCAGCTGAATTCACAGGCTCGCAAAGCAGCCGTATGTTTGGAAAGCTTTAGCCATTGCTGTGATTTTCTATTTTCTGGAGGTGGGGACAGG-ATAGGAGGTGGCCCCTAGTCCCTAGAGAATATTTCCAA-AGTGTGTTTCCCAGTCGGGATC-AATTATTGTTTGTTGACTTGGTCTCAGGATTGGGCTGTGTTCTAACTTGAGAATTGCCAGGCCTCAGGGAAGCGTCTGCTTTTTAG-GGGCAGTCTGCCCAACATCTGCCACTAACACAAGTC--AGAGGGCCACGGCCATCACCAGTGC-TGCAAGTGGGAAGGACACAGTGGACTTACATAAACACCGTGGCATTCCTGCCTGCAGCTCTGGAGCTCCAGCCTCAT-CCCCACTATCTCTGCTGC-GACTTGACCCACAGGCAGATGAGGCCCCGGGAATTAGTTGC------------------ACCTGGGGAG--TCTGGAAGTGTAGCCCAGCCCTCCATGTGTGGAAGGACAGGGTCCAGACCCCTCCGGTCCTCCTTCTTCGGTGGCTGAATGGCTGGAGGCCGCCATGACACCCGTCACACACA-TTCACTCACTCACCATTCACTCCCACTCTTCTGCCCC-TGCCCC-TCCCAGGCTCCCAACTCTCTCTGTCATGTGTACCTTGAAGGTTTGCTAGATGATATCATAGTAGACACTAACTAAGTCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140016630 1067 - 143122389 GGCACGACACTCATTCTGGCA-------------CTGTGACCGCCCTC-----------------------CTGGTCACAACGCCTGGTCTCCACACTGGCAGGGCTGTTCTCTTACAAGGA--GGTACACAGGGTTTGAGACAGCTCCAGTTGTCGCTCATCGAGAACTCGTGAAGACAGACAGGGGAGCAGTGACCCTGGGAATCAGCCGGGAGAGTCCGTTCATCCACGTAGTGAGA-C-CGTGTCTCTGTTGCTGCGGTTC-TATGTCCACCCCACATTCTGTGATTCATTGTGTG-TCTTATTAGTATATTATAATCTTATTAGAAGGGCAATTTTTCTCTAATTTTTCTGTCATTTTTGTAGTTCTGTGC-AAAAGGCATGAAATTGTGGATTAAAATGAGGGCATCTGGATATTGCTAGAAAACACCAGCTGAATTCACAGGCTCACAAAGGGGCCGTATGTTCAGAACACTTTAGCCATTGCTGAGATTTTCCATTTTCTGGAGGTGGGGACAGGAAAAAAAAGTGGCCCCCAGTCCCTAGAGAATATTTCCGA-AGTGTGTTTCCCAGTTGGGATC-AATTATTGTTGGTTGACTTGGTCTCAGGACTGGGCTGCGTTCTAACTCTAGAACTGCCAGGCCTCGGGGAAGCGTCTGCTTTTCAG-GAC-AGTCTGCCCATCATCTGCCACTAACACAAGTC--AGAGGGCCATGGCCATCACCAGTGC-TGCAAGTGGGAAGGGCAGAGTGGACTTACATAAACACCGTGGCATTCCTGCCTGCAGCTCTGGAGCTCCACCCTCAT-CCCCACTATCTCTCCTTG-GACTTGAACCACAGGCAGATGAGGCCCCGGGAATTAGTTGC------------------ATGTGGGGAG--TCTGGAAGTGCAGCCCAACCCTCCATGTGTGGAAGGACAGGGTCCAGACCCCTCCCGTCCTCCTTCTTCGGTGGCTGAATGGCTGGAGGCCGCCATGACACCCCTCAcacaca-ttcactcactcaccattcactcccactcTCCTGCCGC-TGCCCC-TCCCAGGCTCCCAA--CTCTCTGTCATGTGTAGCTTGAAGGTTTGCTAGATGATATCATAGTAGGCACTAACTAAGTCTT i nomLeu3.chr5 C 0 I 118 s rheMac3.chr1 16734641 1045 - 229590362 GGCACGACACTCATTTTGGCA-------------CTGTGACCGCCCTC-----------------------CTGGTCACAATGCCTGGTCTTCACACTGATAGGGCTGTTCTCTTACAAGGA--GGGACACAGGGTTTGAGACAGCTCCAGCTGTCGCTCATCAAGAACTTGTGAAGACAGACAGGGGAGCAATGACCCTGGGAATCAGCCGGGAAAGTTCATTCATCCACGTAGTGAGA-C-TGTGTCTCTGT---TGCAGTTCTTATGTCCA-CCCACATTCTGTGATTCATTGTGTGTTCTTATTAGTATATTATATTC-TATTAGAGGGT--AATTTTCTCTAA-TTTTCTGTCA-TTTTGTAGTTCTGTGC-AAAAGGCATGAAATTGTAGATTAAAATGAAGGCATCTGGATATTGCTAGAAAACACCAGCTGAATTCACAGGCTCTCAAAGTGGCCGTATGTTTGAAAAGCTTTAGCCATTGCTGCGATTTTCTGTTTTCTGGAGGTGGGGACAGG-ATAGGAGGTGGCCCCCAGTCCCTAGAGAATATTTCCAA-AGTGTGTTTCCCAGTCGGGATC-GATTATCGTTTGTTGACTTGGTCTCAGGATTGGGCTGCGTTCTAACTCGAGAATTGCCAGGCCTCAGGGAAGCATCTGCTTTTCAG-GGC-AGTCCGCCCGTCACCTGCCACTGAGACAAGTC--AGAGGGCCACGGCCATCACCCGTGC-TGCAAGCAGGAAGGACAGAGTGGATTGACATAGACACCGTGGCATTCCTGCCGGCAGCTCTGGAGCTCCGTGCTCAT-CCCCACTTTCTCTCCCTA-GACTTGAACCACAGGCAGGTGAGGCCACGGGAATGAGTCGC------------------ACCCAGGGAG--TCTGGAAGTGTAGCCCAACCCTCCATGTGTGGAAGGACAGGGTCCAGACCCCTCCGGTCCTCCTTCTGCAGTGGCTGAATGGCTGGAGGCCGCCATGACACCC-TCACACA----------------CATTCACTCCCACTCTCCTGCCCC-TTCTCC-TCCCAGGCTCCCAACTCTATCTGTCATGTGTACGGTGAAGGTTTGCTAGATGATATCATAGTAGACACTAACTAAATCGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223494810 1045 - 227556264 GGCACGACACTCATTTTGGTA-------------CTGTGACCGCCCTC-----------------------CTGGTCACAATGCCTGGTCTTCACACTGATAGGGCTGTTCTCTTACAAGGA--GGGACACAGGGTTTGAGACAGCTCCAGCTGTCGCTCATCAGGAACTCGTGAAGACAGACAGGGGAGCAATGACCCTGGGAATCAGCTGGGAAAGTTCATTCATCCACGTAGTGAGA-C-TGTGTCTCTGT---TGCAGTTCTTATGTCCA-CCCACATTCTGTGATTCATTGTGTGTTCTTATTAGTATATTATATTC-TATTAGAGGGT--AATTTTCTCTAA-TTTTCTGTCA-TTTTGTAGTTCTGTGC-AAAAGGCATGAAATTGTAGATTAAAATGAAGGCATCTGGATATTGCTAGAAAACACCAGCTGAATTCACAGGCTCTCAAAGTGGCCGTATGTTTGAAAAGCTTTAGCCATTGCTGCGATTTTCTGTTTTCTGGAGGTGGGGACAGG-ATAGGTGGTGGCCCCCAGTCCCTAGAGAATATTTCCAA-AGTGTGTTTCCCAGTCGGGATC-GATTATCGTTTGTTGACTTGGTCTCAAGATTGGGCTGCGTTCTAACTCGAGAATTGCCAGGCCTCAGGGAAGCATCTGCTTTTCAG-GGC-AGTCCGCCCGTCACCTGCCACTGAGACAAGTC--AGAGGGCCACGGCCATCACCCGTGC-TGCAAGCAGGAAGGACAGAGTGGATTGACATAGACACCGTGGCATTCCTGCCGGCAGCTCTGGAGCTCCGTGCTCAT-CCCCACTTTCTCTCCCTA-GACTTGAACCACAGGCAGGTGAGGCCACGGGAATGAGTCGC------------------ACCCAGGGAG--TCTGGAAGTGTAGCCCAACCCTCCATGTGTGGAAGGACAGGGTCCAGACCCCTCCGGTCCTCCTTCTGCAGTGGCTGAATGGCTGGAGGCCGCCATGACACCC-TCACACA----------------CATTCACTCCCACTCTCCTGCCCC-TTCTCC-TCCCAGGCTCCCAACTCTATCTGTCATGTGTACGGTGAAGGTTTGCTAGATGATATCATAGTAGACACTAACTAAATCGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16546916 1045 - 220367699 GGCACGACACTCATTTTGGCA-------------CTGTGACCGCCCTC-----------------------CTGGTCACAATGCCTGGTCTTCCCACTGATAGGGCTGTTCTCTTACAAGGA--GGGACACAGGGTTTGAGACAGCTCCAGCTGTCGCTCATCAAGAGCTCGTGAAGACAGACAGGGGAGCAAGGACCCTGGGAATCAGCCGGGAAAGTTCATTCATCCACgtagtgaga-c-tgtgtctctgt---TGCAGTTCTTATGTCCA-CCCACATTCTGTGATTCATTGTGTGTTCTTATTAGTATATTATATTC-TATTAGAGGgt--aattttctctaa-ttttctgtca-ttttgtagTTCTGTGC-AAAAGGCATGAAATTGTAGATTAAAATGAAGGCATCTGGATATTGCTAGAAAACACCAGCTGAATTCACAGGCTCTCAAAGCGGCCGTATGTTTGAAAAGCTTTAGCCATTGCTgcgattttctgttttctggaggtGGGGACAGG-GTAGGAGGTGGCCCCAAGTCCCTAGAGAATATTTCCAA-AGTGTGTTTCCCAGTCGGGATC-GATTATCGTTTGTTGACTTGGTCTCAGGATTGGGCTGCGTTCTAACTCGAGaattgccaggcctcagggaagCATCTGCTTTTCAG-GGC-AGTCCGCCCGTCACCTGCCACTGAGACAAGTC--AGAGGGCCACGGCCATCACCCGTGC-TGCAAGCAGGAAGGACAGAGTGGATTGACATAGACACCGTGGCATTCCTGCCGGCAGCTCTGGAACTCCGTGCTCAT-CCCCACTTTCTCTCCCTG-GACTTGAACCACAGGCAGGTGAGGCCACGGGAATGAGTCGC------------------ACCCGGGGAG--TCTGGAAGTGTAGCCCAACCCTCCATGTGTGGAAGGACAGGGTCCAGACCCCTCCGGTCCTCATTCTGCAGTGGCTGAATGGCTGGAGGCCGCCATGACACCC-TCACACA----------------CATTCACTCCcactctcctgcccc-tgcccc-tcccaggctCCCAACTCTGTCTGTCATGTGTACGTTGAAGGTTTGCTAGATGATATCATAGTAGACACTAACTAAATCGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82346222 1044 + 85787240 GGCATGACACTCATTTTGGCA-------------CTGTGACCGCCCTC-----------------------CTGGTCACAATGCCTGGTCTTCATACCGATAGGGCTGTTCTCTTACAAGGA--GGGACACAGGGTTTGAGACAGCTCCAGCTGTCGCTCATCAAGAACTCCTGAAGACAGACAGGGGAGCAATGACCCTGGGAATCAGCCGGGAAAGTTCATTCATCCACGTAGTGAGA-C-TGTGTCTCTGT---TGCAGTTCTTATGTCCA-CCCACATTCTGTGATTCATTGTGTGTTCTTATTAGTATATTATATTC-TATTAGAGGGT--AATTTTCTCTAA-TTTTCTGTCA-TTTTGTAGTTCTGTGC-AAAAGGCATGAAATTGTAGATTAAAATGAAGGCATCTGGATATTGCTAGAAAACACCAGCTGAATTCACAGGCTCTCAAAGCGGCCGTATGTTTGAAAAGCTTTAGCCATTGCTGCGATTTTCTGTTTTCTGGAGGTGGGGACAGG-ATAGGGGGTGGCCCCAAGTCCCTAGAGAATATTTCCAA-AGTGTGTTTCCCAGTCGGGATC-GATTATCGTTTGTTGACTTGGTCTCAGGATTGGGCTGCGTTCTGATTCAAGAATTGCCAGGCCTCAGGGAAGCGTCTGCTTTTCAG-GGC-AGTCTGCCCGTTACCTGCCACTAACACAAGTC--AGAGGGCCACGGCCATCACCCGTGC-TGCAAGCAGGAAGGACAGAGTGGATTGACATGGACCCCGTGGCATTCCTGCT-GCAGCTCTGGAGCTCCGTGCGCAT-CCCCACTTTCTCTCCCTG-GACTTGAACCACAGGCAGGTGAGGCCACGGGAATGAGTCGC------------------ACCTGGGGAG--TCTGGAAGTGTAGCCCGACCCTCCATGTGTGGAATGACAGGGTCCAGACCCCTCCGGTCCTCCTTCTGCAGTGGCTGAATGGCTGGAGGCCGCCATGACACCC-TCACACA----------------CATTcactcccactctcctgcccc-tgcccc-tcccaggctcccaactcTGTGTGTCATGTGTACGGTGAAGGTTTGCTGGATGATATCATAGCAGACACTAACTAAATCGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14015238 1045 - 49578535 GGCACGACACTCATGTTGGCA-------------CTGTGACCACCATC-----------------------CTGGTCACAGGGCCTGCTCTCCACCCTGGCAGGGCCATTCTCTGACAAGGA--GGGACACGGGGTTTGAGGCAGCCCCAGTTGTCACTCATTGAGAACTCGTGGAGACAG--AGGGGAGCAGTGACCCTGGGAGTCGGCC-GGAGAGTCCATTCATCCACGCCGCGAGA-C----GTGTCTGT---GGCGATTCATACGTCTG-TGCGCATTCTGCGATGCATTGTGTGTTCCTATTAGTATATTATAACC-TATTAGATGGT--AATTTTCTCTAA-TTTTCTGTCA-TTTTGTAGTTCTGTGC-AAAAGGCATGAAATTGTGGATTGAAATGAGGGCATCTGGAGATTGCTAGACAACGCCAGCTGAATGGGCAGGCTCTCAAAGCCGCCGCGTGTTTGGGCGGCTTTCGCCATTGCTG-AATTTTCCCTTTTCTGGAGGTGGGAACAGG-ATAAGAGGCGGCCCCTGGTCCCTAGAGAATATTTCCAA-AGTGTGTTTTCCAGTTGGGATC-GGTTATTGCTTGTTGACTTGGTCTCAGGATTGGGCCGCATTCTAATTCCGGAACTGCCAGGCCTCAGGGAGGCATCTGCTTTTCAG-GGC-TGTCTGCCCACCACCTGCCACTAACACAAGTC--AGAGGGCCGTGGCCCTTATCAGTGC-CTCAA-TGGGAAGGGCAGAGTGGATTTCCATGGACACCCTGGCATTCCCGCCTGCGGCTCTGGAGCGCCACACTCAT-TCCCACCGTCTCTCCTTG-GACTTGAACCACAGACAGATGAAGCCCCAGGAACGAGCTGT------------------AGCTGGGGAGATTCTGGAAGTGCAGCCCAACCCTCCATGTGCGGAAGGACAAGGCCCAGACCCCCGCT-TCCTCCTTTTCAGGTGGCTCAATGGCTGGAGGCTGCCATGACCCCCCTCACACACA-TTCACTCAGTCACCATTCACTTCCACTCTCCTGCCCC--ACCCC-TCCCAGGCTCCCAGCTC----TGTCACATGTACCTTGAAGGTTTGCTGGATGATATCATGGTAGACACTAGCTAGT---- i calJac3.chr19 C 0 C 0 s mm10.chr1 178646140 1021 + 195471971 GACAGGAGGCTCCTCCTAGCAGAGACCGTGGATGTGGTGCCCGCCATCACTGCTAGAGGGCACATCACTCATTGACTGCCACGTCTGGTCTCTACCTGAGCAGAGCA--TGGATGACAAGGA--TGGGCGCTGGGTTT-AGACAAGTACAGTTGTCTCTCGCTG-GAAGTTGTAAAGAA----GGGTGAGAGATG--CCTAGGC-TTAACTGAGGA----TACTGGTGATCGTGGTGGGA-CCTGTGTCTCCCC---TGCAA--CGGGTGTGGA-TGTACATTCTGAGCGGAAGTGTGCATGCTTA-----ATAATATAACC-TACTAGAGAGC--AATTTCCACTGA-TTCCCTGTCA-TTTTGTAGTTCTGTGC-AAAAGGCATTGAATTGTGGATTAAAACGGGGGTGCGTGGCCATCACT-GAACACACCAGCTGAATGCACTGGCTCTGGGAATATCATTA----------GCTCTA-CCATTTCTGC---------TTTTCCGGAGGCTAGAGAGGG-ATGGCGGGT--------ATCCAGAGAGAATGCTCTTGATGGTGTGTTCCTTGGTGGCAATTGGGGTTTTCCCTACTGGCTTCATCTCAGGCTTGGGCTTCATTCT---------ATTTTCAGGCTTCAGGGAAGCTGCTGCTTTTCAG-GGC-TGTCAACCTGCCACCTGTCAGTAACAC-CGTC--AGAAAGATATGG-CAGCATTAGTGCATGGAA--GAGAGGGACACAGGCGATTTGCATACTCTT-------TTCCTGCCTACAGCCCTCTATCTCTCCACTTAT-T-CAGCTCTCTTCCTGTGCAATTTGAAATGC--TCAGACAAAG-CACTGGAATGACCTGA------------------ACTGGGAGAGAGGCTGGAACCCTGGTGAGATCACC--TCTGTGGTAGGAAACAGTCCAATTCCTTCCTTTCTTCCTT-TCCAGTGGGTGA---GGTGGGAGCCCAGATAGCAGCAACCCTCTGGAGTGCATTCAGTTACCATTCAGTCC--CTCTCTTGCTGCAAGCCCT-GTCCAGGCTCCCAGCTCCTTC--TCATTTGTACATGACATGTTCATCAGACGATATCACAGTAAGCATGAATTGGCTAGT i mm10.chr1 I 108 C 0 s canFam3.chr7 36221892 999 + 80974532 -----GGCTGGCGCTGCAGCA-------------CTGTGATCACCCCT-----------------------C----------ACTCGGTCCCCACAGTGGCAGGGCCTTGCTCCTTCCAGGGACGGGCCCCAGGGTTTCCAACAACACTAGCTGTCTCTCCCAGGAAAGTTGTAAAGACAGGCAGCCGAACAGCGATCAGGGTA--TAACCAGGATGTTTCATTCATGCTTACAAGGAGAGC-TGTGTCTCTCT---TCAGCTCTTTGTGTCCA-TGCACTGTCTGTGCTGCATTGTGTGCTATTATTAATATATTATAATC-TATTAGAGGGT--AATTTTCTCTCA-TTTTCTGTCA-TTTTGCAGTTCTGTGCAAAAAGACATTAGATTGTGGATTAAAATGCGGGCATTTGGATATCACTGGAAAAAAACAGCTGAGTTCACAGGCTCTCAAAGTGGCAGTGTGTTTGAAAAGCATTAGCCATTTCTGC--------CTTTTGTGGAGA-GAGGGCAGG-AGAAGAGGTGGCCACCAGTCCCTGGGAAATATTTCTTA-AGTGTGTTCCTCATGGGAGACT-GAGTTCGA---GTTAAGCTGGTTTT--GCATGGGCTCTGTTCTAACCCCAATATTGCCAGGCCTCAGAGAAGCATGTGAGCTACAGAGGC-TGGCAGCCCACCACCTGTCACTAACCCAAGTCAGAGAGGGAAGCAGCCATCACCAGGGC-TGTGAGCGAGGAGGGCAGAGCCGATTTATGTAACTACCCCGCTATTCTTGATTGTGGCTATAAAGCTGCACACACTCACCCCGCCGGCTCTCTTAG-GACTTGGA--GCAGACAGATGAGGCCCGCAGAACAAGCTGTGGGCTGCAGGAGGAGCAGGTTGGGGGAG--TCTGGGAGGCTAGGCCATCCACACGGGTTTGG-----TGCCGTCTGGTCCCCTCCCTGCTTCTTTC--CAGCAGCTGCGTGGTTGGAGTCC---ATGATGTCCATCCCCT-----------------CATTCACT----GTCTATTTCTTC-TGTCCA-TCGAATGCT-------------------------GGAGAAGTTCATTAGATCACATCACAGTAGACCATAACTAAATATT i canFam3.chr7 C 0 C 0 a score=198367.000000 s hg38.chr1_KI270759v1_alt 24050 56 + 425601 TGTTAAATAAACAATAGAGTGACATGTATACAATCAATAAGACCAAAAAAGGTG-----TT s panTro4.chr1 224763355 56 + 228333871 TGTTAAATAAACAATAGAGTGACATGTATACAATCAATAAGACCAAAAAAGGTG-----TT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226128562 56 - 229942017 TGTTAAATAAGCAATGGAGTGACATGTATACAATCAATAAGACCAAAAAAGGTG-----TT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140017815 56 - 143122389 TGTTAAATAAGCAGTAGAGTGACATGTATACAATCAATAAGACCAAAAAAGGTG-----TT i nomLeu3.chr5 I 118 C 0 s rheMac3.chr1 16735686 61 - 229590362 TGTTAAATAAATAGTAGAGTGACATGTATACAATCAATAAGACCAAAAAAAGTGTTTCTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223495855 61 - 227556264 TGTTAAATAAATAGTAGAGTGACATGTATACAATCAATAAGACCAAAAAAAGTGTTTCTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16547961 61 - 220367699 CGTTAAATAAACAGTAGAGTGACAGGTATACAATCAATAAGACCAAAAAaggtgtttcttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347266 61 + 85787240 CGTTAAATAAATAGTAGAGTGACATGTATACAATCAATAAGACCAAAAAAGGTGTTTCTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14016283 58 - 49578535 TGTTAAATAAACAGTTGAGTGACATGTATACAATCAATAAGAACAAAAAAGCTGTT---TT i calJac3.chr19 C 0 C 0 s mm10.chr1 178647161 34 + 195471971 ----------------------TATGCACACGATCAGTAAGACCAAAGAGGAGG-----TT i mm10.chr1 C 0 I 48 s canFam3.chr7 36222891 56 + 80974532 TGTTACACAGACAATGGAGTGATATATATGCAATCAATAAAACCAAAAAAGGAT-----CT i canFam3.chr7 C 0 C 0 a score=38559.000000 s hg38.chr1_KI270759v1_alt 24106 14 + 425601 ---TAAAAAAA----------TCtttt s panTro4.chr1 224763411 14 + 228333871 ---TAAAAAAA----------TCtttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226128618 14 - 229942017 ---TAAAAAAA----------TCtttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140017871 14 - 143122389 ---TAAAAAAA----------tctttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16735747 14 - 229590362 ---TAAAAAAG----------TCttct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223495916 14 - 227556264 ---TAAAAAAG----------TCttct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16548022 14 - 220367699 ---taaaaaag----------ccttct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347327 14 + 85787240 ---TAAAAAAG----------tcttct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14016341 14 - 49578535 ---TAAAAAAA----------TCTTTT i calJac3.chr19 C 0 I 264 s canFam3.chr7 36222947 27 + 80974532 TGATAGTAGGAGCCTGCAttttctttt i canFam3.chr7 C 0 C 0 e mm10.chr1 178647195 48 + 195471971 I a score=49451.000000 s hg38.chr1_KI270759v1_alt 24120 15 + 425601 -atttttattttttaa s panTro4.chr1 224763425 15 + 228333871 -atttttattttttaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226128632 15 - 229942017 -atttttattttttaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140017885 15 - 143122389 -atttttattttttaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16735761 15 - 229590362 -atttttattttttaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223495930 15 - 227556264 -atttttattttttaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16548036 15 - 220367699 -atttttattttttaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347341 15 + 85787240 -gtttttattttttaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14016619 15 - 49578535 -atttttattttttaa i calJac3.chr19 I 264 C 0 s canFam3.chr7 36222974 15 + 80974532 cttttcttttcttta- i canFam3.chr7 C 0 I 57 e mm10.chr1 178647195 48 + 195471971 I a score=147139.000000 s hg38.chr1_KI270759v1_alt 24135 61 + 425601 gagacagg-cctcactccgttgtacaggctg--gagtgcagtggcacaatcactgttcactgca s panTro4.chr1 224763440 61 + 228333871 gagacagg-cctcactccgttgtacaggctg--gagtgcagtggcacaatcactgttcactgca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226128647 61 - 229942017 gagacagg-cctcactctgttgtacgggctg--gagtgcagtggcacaatcactgttcactgca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140017900 57 - 143122389 gagacagg-cctcactctgttgtacaggctg--gagtgcagtg----aattccaccacattgca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16735776 63 - 229590362 aagacagg-gctcactctgttgttcagactgtatagtgcagtggtacaatcatcgctcactgca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223495945 63 - 227556264 aagacagg-cctcactccgttgttcagactgtatagtgcagtggtacaatcatcgctcactgca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16548051 63 - 220367699 aagacagg-cctcactctgttgttcagactgtatagtgcagtggcacaatcacagctcacttca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347356 61 + 85787240 aagacagg-cctcactctgttgtacagactg--tagtgcagtggcacaatcacagctcactgca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14016634 62 - 49578535 gagacaggttctcattctgttgtgcaggctg--aaatgcagtggcacagtcatggctcactgta i calJac3.chr19 C 0 C 0 e mm10.chr1 178647195 48 + 195471971 I e canFam3.chr7 36222989 57 + 80974532 I a score=4500.000000 s hg38.chr1_KI270759v1_alt 24196 3 + 425601 gcc s panTro4.chr1 224763501 3 + 228333871 gcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226128708 3 - 229942017 gcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140017957 3 - 143122389 gcc i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82347417 3 + 85787240 gcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14016696 3 - 49578535 gcc i calJac3.chr19 C 0 C 0 e mm10.chr1 178647195 48 + 195471971 I e canFam3.chr7 36222989 57 + 80974532 I e rheMac3.chr1 16735839 0 - 229590362 C e papAnu2.chr1 16548114 0 - 220367699 C e macFas5.chr1 223496008 0 - 227556264 C a score=11880.000000 s hg38.chr1_KI270759v1_alt 24199 15 + 425601 ttgaactcctaggct s panTro4.chr1 224763504 15 + 228333871 ttgaactcctaggct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226128711 15 - 229942017 ttgaactcctaggct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140017960 15 - 143122389 ttgaactcctaggct i nomLeu3.chr5 C 0 M 991 s calJac3.chr19 14016699 15 - 49578535 tcaaagtcctgggct i calJac3.chr19 C 0 C 0 e mm10.chr1 178647195 48 + 195471971 I e canFam3.chr7 36222989 57 + 80974532 I e rheMac3.chr1 16735839 0 - 229590362 C e chlSab2.chr25 82347420 0 + 85787240 C e papAnu2.chr1 16548114 0 - 220367699 C e macFas5.chr1 223496008 0 - 227556264 C a score=32989.000000 s hg38.chr1_KI270759v1_alt 24214 76 + 425601 caaattatcctcctcccttagcctcccaagtagctgtgactaca-------gctaccgtgtctggctaattgtgaaa--tttttt s panTro4.chr1 224763519 76 + 228333871 caaattatcctcctcccttagcctcccaagtagctgtgactaca-------gcttccgtgtctggctaattgtgaaa--tttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226128726 78 - 229942017 caaattatcctcctcccttagcctcccaagtagctgtgactaca-------gctaccatgtctggctaactgtaaaatttttttt i ponAbe2.chr1 C 0 C 0 s calJac3.chr19 14016714 83 - 49578535 caagtgatcctcctgcctcagcctcccaagtagctgggaccacaggtgcatgctgccacatctggctaattttaaag--tttttt i calJac3.chr19 C 0 C 0 e mm10.chr1 178647195 48 + 195471971 I e canFam3.chr7 36222989 57 + 80974532 I e rheMac3.chr1 16735839 0 - 229590362 C e chlSab2.chr25 82347420 0 + 85787240 C e papAnu2.chr1 16548114 0 - 220367699 C e macFas5.chr1 223496008 0 - 227556264 C e nomLeu3.chr5 140017975 991 - 143122389 M a score=76531.000000 s hg38.chr1_KI270759v1_alt 24290 165 + 425601 ggtaaagacagggtcttgctatgttgcccaggctga-------------tcttgaacctctgggctcaacc--gatc-----------------tgaagtgcaaagattacaggagtgagcc-act---gtgcctggccCCCAAAAAGGATTTTAATGTTAGGAG-CTGAGTTATCTGAGCAGACACAGTCCACTGTCTGGT s panTro4.chr1 224763595 165 + 228333871 ggaaaagatagggtcttgctatgttgcccaggctga-------------tcttgaaccacagggctcaacc--gatc-----------------tgaagtgcaaagattacaggag-gagcgaact---gtgcctggccCCCAAAAAGGATTTTAATGTTAGGAG-CTGAGTTATCTGAGCAGACAGAGTCCACTGTCTGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226128804 165 - 229942017 ggtaaagacagggtcttgctatgttgcccaggctaa-------------tcttaaacctctgggctcaacc--gatc-----------------tgaagtgcaaagattacaggagcgagcc-act---gtgcctggccCCCAAAAAGGATTTTAATGTTAGGAG-CTGAGTTATCTGAGCAGACACAGACCACTGTCTGGT i ponAbe2.chr1 C 0 C 0 s calJac3.chr19 14016797 180 - 49578535 -gtggagataggatcttgttatgttgcccagtctga-------------tcttgaacctctgggctcaacc--gatcctcccaccttggccttttgaaatgcagggattacaggagtgagcc-act---gtgcctgg--ccCAAGAAGGATTTTAATATTAGGAGCCCGAGTTACCTGAGCAGACACAGTCCAGTCTCTGGT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36223046 153 + 80974532 gggagaagcaggctcctgcgagg------agcctgatggaggactggattccaggaccccaggatcacaccctgagc-----------------tgaag-gcagatgctcaaccactgagcc-acccaagtgcc-----ccCA-------------------GAGCCTGCGTTTTCTGAAAGGACACTGCTCACTATCTGGT i canFam3.chr7 I 57 C 0 e mm10.chr1 178647195 48 + 195471971 I e rheMac3.chr1 16735839 0 - 229590362 C e chlSab2.chr25 82347420 0 + 85787240 C e papAnu2.chr1 16548114 0 - 220367699 C e macFas5.chr1 223496008 0 - 227556264 C e nomLeu3.chr5 140017975 991 - 143122389 M a score=103246.000000 s hg38.chr1_KI270759v1_alt 24455 165 + 425601 CCCAAGGCTCCATGTA--GAATTGTCTGCTTTT---AGCACACAGGCC-------CACCTGGGCTGGCCT-----GAGGAGGAAATTCAGGAGTGGGAGATGCCATCTTTTCCTAGCCAGGAGGGGCTGCAGAGCGTGTGGGCTGAGACTCTTGGGGAGGGGGTGTGAGGGGCAGTCACATG s panTro4.chr1 224763760 165 + 228333871 CCCAAGGCTCCATGTA--GAATTGTCTGCTTTT---AGTGCACAGGCC-------CACCTGGGCTGGCCT-----GAGGAGGAAATTCAGGAGTGGGAGATGCCATCTTTTCCTAGCCAGGAGGGGCTGCTGAGCGTGTGGGCTGAGACTCTTGGGGAGGGGGTGTGAGGGGCAGTCGCATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226128969 165 - 229942017 CCCAAGGCTCCATGTA--GAATTGTCTGCTTTT---AGCGCACAAGCC-------CACCTGGGCTGGCCT-----GAGGAGGAAATTCAGGAGTGGGAGATGCCATCTTTTCCTAGCCAGGAGGGGCTGCTGAGCGTGTGGGCTGAGACTCTTGGGGAGGGGGTGTGAGGGGCAGTCACATG i ponAbe2.chr1 C 0 C 0 s calJac3.chr19 14016977 164 - 49578535 CTCAAGGTTCCAAGTA--GAATGGTCTGC-TTT---AGCGCGCAGGCC-------CACCTGCGCTGGCCTGAGGAGAGGAGGAAATTCAGGAGTGGGAGATGACATC---TCCTAGCCAAGAGGAGCTGCTGAGCGTGTGGGCTGAGACTCTTGGGTAGGGTGTGTGAGGG--AATCACATG i calJac3.chr19 C 0 C 0 s mm10.chr1 178647243 147 + 195471971 CCTGAGGCTCCATGTA--GAATTGTCCCCTTTT---GGAGCACAGCCCTCTTCCTTCCCAGGGCTGTGCA-----CAGGAGGGTAAGGAGATGTGGAGGGGACCATCTTTTC-------------------------ATGAGCAGGACCCCTCAGGAGGAGTGGTTGATAGGTAACAGAATA i mm10.chr1 I 48 C 0 s canFam3.chr7 36223199 156 + 80974532 CCAAAGGCTCCATGGGGTGAGCTGTCCCCCCCTCACAGAGCACAGACC------CCACCGGGGCCTGCCT-----GAGGAGGGG--TCAGGTGTGAG-TATGCTGTTTTCTCCTAACGGAGAA------------GTGGGGACTGAAACCCCCAAGTAGGATGGGTGATGAGCCATAGCATA i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16735839 0 - 229590362 C e chlSab2.chr25 82347420 0 + 85787240 C e papAnu2.chr1 16548114 0 - 220367699 C e macFas5.chr1 223496008 0 - 227556264 C e nomLeu3.chr5 140017975 991 - 143122389 M a score=7664.000000 s hg38.chr1_KI270759v1_alt 24620 3 + 425601 GCC s panTro4.chr1 224763925 3 + 228333871 GCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226129134 3 - 229942017 GCC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16735839 3 - 229590362 gcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223496008 3 - 227556264 gcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16548114 3 - 220367699 gcc i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14017141 3 - 49578535 GCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178647390 2 + 195471971 -TC i mm10.chr1 C 0 I 1 s canFam3.chr7 36223355 3 + 80974532 GCT i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82347420 0 + 85787240 C e nomLeu3.chr5 140017975 991 - 143122389 M a score=146743.000000 s hg38.chr1_KI270759v1_alt 24623 57 + 425601 TCATGTGAAATTCTCCAT----AAAGAAT---------------CCCAGGCAGAAGGCCATGGACAGGCAGGCTGG s panTro4.chr1 224763928 57 + 228333871 TCATGTGAAATTCTCCAT----AAAGAAT---------------CCCAGGCAGAAGGCCGTGGACAGGCAGGCTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226129137 61 - 229942017 TCATGTGAAATTCTCCATAATAAAAGAAC---------------CCTAGGCAGATGGCCGTGGACAGGCAGGCTGG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16735842 57 - 229590362 tcATGTGAAATTCTCCAT----AAAGAAT---------------CCCAGGCAGACGGCCATGGATAGGCAGGCTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223496011 57 - 227556264 tcATGTGAAATTCTCCAT----AAAGAAT---------------CCCAGGCAGTCGGCCATGGATAGGCAGGCTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16548117 72 - 220367699 tcatgTGAAATTCTCCAT----AAAGAATGGATGGCCATGGATCTCCATAAAGACGGCCATGGATAGGCAGGCTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347420 57 + 85787240 tcATGTGAGATTCTCCGT----AAAGAAT---------------CCCAGGCAGACGGCCATGGATAGGCAGGCTGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14017144 54 - 49578535 --TCGTGAAATTCTTCAT----GGAGAAT---------------CCCAGGCAGATGG-CATGGGCAGGCAGGCTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178647393 56 + 195471971 TCGTGTGA-ATCCTCTTC----CAATGAT---------------TCTAGGCAGACTTCACTGGGCCAGCGAGCTGG i mm10.chr1 I 1 I 40 s canFam3.chr7 36223358 56 + 80974532 CCACATGAGATTCCCCAC----AAAGAAT---------------CCCC-GCAGACAGCTTTGGTTAGGCAAGCTGG i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140017975 991 - 143122389 M a score=84027.000000 s hg38.chr1_KI270759v1_alt 24680 36 + 425601 ----------------------TGCACCGCATGTGTGAAGATGAGCAGCAGGGACAAC s panTro4.chr1 224763985 36 + 228333871 ----------------------TGCACCGCATGTGTGAAGATGAGCAGCAGGGACAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226129198 36 - 229942017 ----------------------TGCACCGCATGTGTGAAGATGAGCAGCAGGGACAAC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16735899 34 - 229590362 ----------------------TGTTCCGC--GTGTGAAGATGAGCAGCAGGGACAAC i rheMac3.chr1 C 0 I 409 s macFas5.chr1 223496068 34 - 227556264 ----------------------TGTTCCGC--GTGTGAAGATGAGCAGCAGGGACAAC i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16548189 34 - 220367699 ----------------------TGTTCCGC--GTGTGAAGATGAGCAGCAGGGACAAC i papAnu2.chr1 C 0 I 42 s chlSab2.chr25 82347477 34 + 85787240 ----------------------TGTTCCGC--GTGTGAAGATGAGCAGCAGGGACAAC i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14017198 36 - 49578535 ----------------------CACACAGCATGTGTGAGGAAGAGCGGCAGGGACAAC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36223414 58 + 80974532 CGTGAGGCTGGTGGCAGGCTGCCACCTAGCACATGTGAAGATGAGCAGCAGGGACGAC i canFam3.chr7 C 0 C 0 e mm10.chr1 178647449 40 + 195471971 I e nomLeu3.chr5 140017975 991 - 143122389 M a score=4153.000000 s hg38.chr1_KI270759v1_alt 24716 9 + 425601 GGGTG-GGTG--- s panTro4.chr1 224764021 9 + 228333871 GGGCG-GGTG--- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226129234 10 - 229942017 TGGTGTGGTG--- i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223496103 9 - 227556264 -GGCGTGGTG--- i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16548265 9 - 220367699 -gagggagtg--- i papAnu2.chr1 I 42 C 0 s chlSab2.chr25 82347512 9 + 85787240 -GGCGTGGTG--- i chlSab2.chr25 I 1 C 0 s calJac3.chr19 14017234 10 - 49578535 TGGCGTGGCG--- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36223472 13 + 80974532 CAGCATGGGGGTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178647449 40 + 195471971 I e rheMac3.chr1 16735933 409 - 229590362 I e nomLeu3.chr5 140017975 991 - 143122389 M a score=1500.000000 s hg38.chr1_KI270759v1_alt 24725 1 + 425601 G s panTro4.chr1 224764030 1 + 228333871 g i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226129244 1 - 229942017 G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140018970 1 - 143122389 G i nomLeu3.chr5 M 991 C 0 s calJac3.chr19 14017244 1 - 49578535 G i calJac3.chr19 C 0 C 0 s canFam3.chr7 36223485 1 + 80974532 G i canFam3.chr7 C 0 C 0 e mm10.chr1 178647449 40 + 195471971 I e rheMac3.chr1 16735933 409 - 229590362 I e chlSab2.chr25 82347521 0 + 85787240 C e papAnu2.chr1 16548274 0 - 220367699 C e macFas5.chr1 223496112 0 - 227556264 C a score=8166.000000 s hg38.chr1_KI270759v1_alt 24726 7 + 425601 GGGGA-----------GG s panTro4.chr1 224764031 7 + 228333871 gggga-----------gg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226129245 7 - 229942017 GGGAA-----------GG i ponAbe2.chr1 C 0 I 390 s nomLeu3.chr5 140018971 7 - 143122389 gggga-----------gg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223496112 6 - 227556264 -GGGG-----------GG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16548274 17 - 220367699 -ggggagggagtgggagg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347521 6 + 85787240 -GGGG-----------GG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36223486 7 + 80974532 GGGGC-----------GG i canFam3.chr7 C 0 C 0 e mm10.chr1 178647449 40 + 195471971 I e calJac3.chr19 14017245 0 - 49578535 C e rheMac3.chr1 16735933 409 - 229590362 I a score=16262.000000 s hg38.chr1_KI270759v1_alt 24733 11 + 425601 GAGTGGGGGAG s panTro4.chr1 224764038 11 + 228333871 gagtgggggag i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140018978 11 - 143122389 gagtgggagag i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223496118 11 - 227556264 GAGTGGGGGAG i macFas5.chr1 C 0 M 2962 s papAnu2.chr1 16548291 11 - 220367699 gagtgggagag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347527 11 + 85787240 GAGTGGGGGAG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36223493 10 + 80974532 GAG-GGATGAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178647449 40 + 195471971 I e calJac3.chr19 14017245 0 - 49578535 C e rheMac3.chr1 16735933 409 - 229590362 I e ponAbe2.chr1 226129252 390 - 229942017 I a score=3070.000000 s hg38.chr1_KI270759v1_alt 24744 4 + 425601 GGAG s panTro4.chr1 224764049 4 + 228333871 gtag i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140018989 4 - 143122389 ggag i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16548302 4 - 220367699 ggag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347538 4 + 85787240 AGAG i chlSab2.chr25 C 0 I 293 s canFam3.chr7 36223503 4 + 80974532 GGTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178647449 40 + 195471971 I e calJac3.chr19 14017245 0 - 49578535 C e rheMac3.chr1 16735933 409 - 229590362 I e macFas5.chr1 223496129 2962 - 227556264 M e ponAbe2.chr1 226129252 390 - 229942017 I a score=3679.000000 s hg38.chr1_KI270759v1_alt 24748 8 + 425601 CGGGAGGA s panTro4.chr1 224764053 8 + 228333871 cgggagga i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140018993 8 - 143122389 tgggagaa i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16548306 8 - 220367699 tggaagga i papAnu2.chr1 C 0 C 0 s canFam3.chr7 36223507 8 + 80974532 TCAGATGA i canFam3.chr7 C 0 I 1 e mm10.chr1 178647449 40 + 195471971 I e calJac3.chr19 14017245 0 - 49578535 C e rheMac3.chr1 16735933 409 - 229590362 I e chlSab2.chr25 82347542 293 + 85787240 I e macFas5.chr1 223496129 2962 - 227556264 M e ponAbe2.chr1 226129252 390 - 229942017 I a score=7443.000000 s hg38.chr1_KI270759v1_alt 24756 25 + 425601 CT-----------AGAGGGAGTGGGAG-----GACTAGGGA s panTro4.chr1 224764061 25 + 228333871 ct-----------agagggagtgggag-----GACTAGGGA i panTro4.chr1 C 0 M 1390 s nomLeu3.chr5 140019001 30 - 143122389 ct-----------ggggggagtgggagagggaggtggggga i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16548314 36 - 220367699 ctgggggagtgggggagggagtgggag-----ggctggggg i papAnu2.chr1 C 0 C 0 e mm10.chr1 178647449 40 + 195471971 I e canFam3.chr7 36223515 1 + 80974532 I e calJac3.chr19 14017245 0 - 49578535 C e rheMac3.chr1 16735933 409 - 229590362 I e chlSab2.chr25 82347542 293 + 85787240 I e macFas5.chr1 223496129 2962 - 227556264 M e ponAbe2.chr1 226129252 390 - 229942017 I a score=15707.000000 s hg38.chr1_KI270759v1_alt 24781 211 + 425601 -----------AAGT--------------------GGAAGAGGgagt----------ggggggagagtggggaaagagtgggggagggagtggg----------------------gacggagt---ggggggactgggggaagtgggagagggagtggagg---------gagagtgggggagggagtgga------gggagagtgggggagggag---------gagggagggagtggggga-----gggagagtgggggagggagtaggggggtaatagggggacagtcgggg---------------------gagagtcggg s nomLeu3.chr5 140019031 172 - 143122389 -----------cagttggg----------------gagagagggagt----------ggggggaatggggggaa---gtgggggagggagtggg---------------------agagggagt---gggagaactgggggaagtgggagagggaggtgggg---------gacagttggggagagag-------------ggagttgggg-----------------------gaatggggg----------gagtgggagagggagtgggagg---actgggggat---------------------------------gtgggg i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16548350 318 - 220367699 agcgggggagggagtgggggaatgggggagggagtggaagagggagtgagagaactgggggagggagtggggga---atgggggagggagtgggggaatgggggagggagttggaagagggagtgagggagggactaagggaa-tgggggaaggagtgggggaatgggggagggagtgggaaagggagtgggaagactgagagagtggaggagggagtgggggaatgggggagggagtgggggatgggggagggagtgggagagggagtgggagg---actgggggag--tcggggagggagtgagggaatggggaagggagttggg i papAnu2.chr1 C 0 I 1 e mm10.chr1 178647449 40 + 195471971 I e canFam3.chr7 36223515 1 + 80974532 I e calJac3.chr19 14017245 0 - 49578535 C e rheMac3.chr1 16735933 409 - 229590362 I e chlSab2.chr25 82347542 293 + 85787240 I e macFas5.chr1 223496129 2962 - 227556264 M e ponAbe2.chr1 226129252 390 - 229942017 I e panTro4.chr1 224764086 1390 + 228333871 M a score=11199.000000 s hg38.chr1_KI270759v1_alt 24992 66 + 425601 gagggagtgggggaggaaataggggggtaatgggggaagagccgggggag------agtcggggagggagtg s nomLeu3.chr5 140019203 72 - 143122389 gagggagtgggggagggaggagggagagagtggggagggagtggggagaatggggaagtgggggagggagtg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223499099 34 - 227556264 -----------------------GGGGGAATGGGGAAGGGAAT---------------TGGGAGAGGGAGTG i macFas5.chr1 M 2962 C 0 s papAnu2.chr1 16548669 61 - 220367699 gagggagtgagggagggact---aagggaatgggggaaggagtgggggaa--------tgggggagggagtg i papAnu2.chr1 I 1 C 0 e mm10.chr1 178647449 40 + 195471971 I e canFam3.chr7 36223515 1 + 80974532 I e calJac3.chr19 14017245 0 - 49578535 C e rheMac3.chr1 16735933 409 - 229590362 I e chlSab2.chr25 82347542 293 + 85787240 I e ponAbe2.chr1 226129252 390 - 229942017 I e panTro4.chr1 224764086 1390 + 228333871 M a score=8095.000000 s hg38.chr1_KI270759v1_alt 25058 39 + 425601 -gggga----gggagtggtggagggattggggga-------------------------------------------------gggaatagcg s ponAbe2.chr1 226129642 39 - 229942017 -gggga----gggagttggggagggagtggtgga-------------------------------------------------ggcagtagga i ponAbe2.chr1 I 390 C 0 s nomLeu3.chr5 140019275 38 - 143122389 --ggga----gggagtggaggagggagtggtgga-------------------------------------------------gggagtaggg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223499133 33 - 227556264 GGAGGACTG-GGGGGAGTgggagggagtggggga----------------------------------------------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16548730 93 - 220367699 ggaagactgagagagtgggggagtgagtgggggaatggggaagggaattgggagagggagtgggaggactggggggagtgggagggagtgggg i papAnu2.chr1 C 0 C 0 e mm10.chr1 178647449 40 + 195471971 I e canFam3.chr7 36223515 1 + 80974532 I e calJac3.chr19 14017245 0 - 49578535 C e rheMac3.chr1 16735933 409 - 229590362 I e chlSab2.chr25 82347542 293 + 85787240 I e panTro4.chr1 224764086 1390 + 228333871 M a score=13708.000000 s hg38.chr1_KI270759v1_alt 25097 25 + 425601 gggtaatggggggagagtcggggga s ponAbe2.chr1 226129681 25 - 229942017 gggtaattggggaagagtcggggga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140019313 25 - 143122389 gggtaattgggggagagtcggggga i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223499166 23 - 227556264 --agagtaggggagggagtggaaga i macFas5.chr1 C 0 I 4 s papAnu2.chr1 16548823 25 - 220367699 ggagagtgggggaggcagtggagga i papAnu2.chr1 C 0 I 2 s mm10.chr1 178647489 25 + 195471971 GGGCAGTAGTGATGGCTGCAGGGCA i mm10.chr1 I 40 C 0 e canFam3.chr7 36223515 1 + 80974532 I e calJac3.chr19 14017245 0 - 49578535 C e rheMac3.chr1 16735933 409 - 229590362 I e chlSab2.chr25 82347542 293 + 85787240 I e panTro4.chr1 224764086 1390 + 228333871 M a score=8400.000000 s hg38.chr1_KI270759v1_alt 25122 5 + 425601 gagtc s ponAbe2.chr1 226129706 5 - 229942017 gagtc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140019338 5 - 143122389 gagtc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16736342 5 - 229590362 gagtt i rheMac3.chr1 I 409 C 0 s macFas5.chr1 223499193 3 - 227556264 --gtt i macFas5.chr1 I 4 C 0 s papAnu2.chr1 16548850 5 - 220367699 gagtt i papAnu2.chr1 I 2 C 0 s chlSab2.chr25 82347835 5 + 85787240 gagtt i chlSab2.chr25 I 293 C 0 s mm10.chr1 178647514 5 + 195471971 GTGTT i mm10.chr1 C 0 C 0 e canFam3.chr7 36223515 1 + 80974532 I e calJac3.chr19 14017245 0 - 49578535 C e panTro4.chr1 224764086 1390 + 228333871 M a score=62436.000000 s hg38.chr1_KI270759v1_alt 25127 27 + 425601 ggggagggagtgggggTGTCGGAGGAT s ponAbe2.chr1 226129711 27 - 229942017 ggggagggagtggggGTGTCGGAGGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140019343 27 - 143122389 ggggagggagtgggggTGTCCGAGGAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16736347 27 - 229590362 ggggaaggagtaggggtgtaggaggag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223499196 27 - 227556264 ggggaaggagtaggggTGTAGGAGGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16548855 27 - 220367699 gaggaaggagtaggggtgtaggaggag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347840 27 + 85787240 ggggaaggagtaggggTGTAGGAGGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14017245 27 - 49578535 GGGGAGGGGGTGGGGGTGTTAGAGGCG i calJac3.chr19 C 0 C 0 s mm10.chr1 178647519 25 + 195471971 --GGAAAGAAAGTCCATGTTGGATGAG i mm10.chr1 C 0 C 0 e canFam3.chr7 36223515 1 + 80974532 I e panTro4.chr1 224764086 1390 + 228333871 M a score=142496.000000 s hg38.chr1_KI270759v1_alt 25154 53 + 425601 GTCTGA-TATATTCACTCCTTCCTTTAATGATTTCAAATGAAGTGCTTTTTTTA s ponAbe2.chr1 226129738 53 - 229942017 GTCTGA-TGTATTCACTCCTTCCTTTAATGATTTCAAATGAAGTGATTTTTTTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140019370 53 - 143122389 GTCTGA-TGTATTCACTCCTTCCTTTAATGATTTCAAATGAAGTGATTTTTTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16736374 53 - 229590362 ATCTGA-TGTATTCACTCCTTCCTTTAATGATTTCAAATGAAGTGATTTTTTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223499223 53 - 227556264 ATCTGA-TGTATTCACTCCTTCCTTTAATGATTTCAAATGAAGTGATTTTTTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16548882 53 - 220367699 ATCTGA-TGTATTCACTCCTTCCTTTAATGATTTCAAatgaagtgattttttaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347867 53 + 85787240 ATCCGA-TGTATTCACTCCTTCCTTTAATGATTTCAAATGAAGTGATTTTTTAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14017272 52 - 49578535 GTCTGA-TGTATTCACTCCTTCTTTTAATGATTTCACATTAAGTGATTTTTAA- i calJac3.chr19 C 0 I 315 s mm10.chr1 178647544 45 + 195471971 GTTGTA-TTTACTCACTGGTTCCCTCAATGATTTCAAACTGTGTTA-------- i mm10.chr1 C 0 I 5 s canFam3.chr7 36223516 48 + 80974532 GTCTGATTTTATTCACTTACGCTCTTAATGACTTCAAACTAAGTGATA------ i canFam3.chr7 I 1 C 0 e panTro4.chr1 224764086 1390 + 228333871 M a score=1045311.000000 s hg38.chr1_KI270759v1_alt 25207 446 + 425601 AAAG--GCAGGCTCACCAATGAGGTGCGGGAAGTCCCCGCAGAG--AGAGAGCCCACGTAGTAAGTAAGGAACGGGGGCGGTTAGAGATTCTGGAGAGGCCG-----GAT-GGAAAATGCACACAC-GGTGAGCAGAAACCATGATCCTGAGACGCTGATGTCCAGGAGGG---AGCCTCAGAGC--------AGGAACGCAGCCGCGGCA-GGGGGCGGTGGGAGTCTGCGGTATGACGTAGGGTACGAAGGGCCTG-------GGGGTGGCAGAGCAGAG-----CCTGCTG--CGGAGGCACAGGCTTCTCA-TTCCG-CGC---GAGT----GACCGAGA-CATGGA--TCGCGCTCTTGCCGGAGG------AGGGTGCACGTGCG-GACCAGAGGC--TTCCCAGCG---------------------------CCACGGTGCCAAGTTGT--GGGGGTGCTGAGCCAGGAGCTTCAGAAGAGCCTCACAA-----------------GCAGGGCACAAGCTGAG-AAAAATGACAGCTCACGAC s ponAbe2.chr1 226129791 449 - 229942017 AAAG--GCATGCTCACCAATGAGGTGCGGGAAGTCCCCGCGGAG--AGAGAACCCATGTAGTAAGTAAGGAACGGGGGCGATGAGAGATTCTGGAGAAGCCG-----GAT-GGAAAATGCACACGC-GGTGAGGAGAAACCATGATCCTGAGACGCTGATGTCCAGGAGGGAGCAGCCTCAGAGC--------AGGAACGCAGCCGCGGTT-AGGGGTGGTGGGAGTCTGCGATATGACATAGGATACGAAGGGCCTG-------GGGGTGACAGAGCAGAG-----CCTGCTG--CGGACTCACAGCCTTCTCA-TTCCG-TGA---GAGT----GACCGAGAGCCTGGA--TCGCGCTCTTGCCGGAGG------AGGGTGCAGGTGTG-GACCAGAGGC--TTCCCAGCG---------------------------CCACGGTGCCAAGTTGT---GGGGTCCTGAGCCAGGAGCTTCAGAAGAGCCTTACAA-----------------GCGGGGCACAAGCTGAG-AAAAATGACAGCTCACGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140019423 467 - 143122389 AAAG--GCACGCTCACCAATGAGGCGCGGGAAGTCCCCGCAAAG--AGAGAACCCATGTAGTAAGTAAGGAACGGCGGCGATGAGAGATTCTGGAGAAGCCG-----GAT-GGAAAATGCACACGC-GGTGAGGAGAAACCAGGATCCTGAGACGCTGGTATCCAGGAGGGAGCAGCCTCGGAGC--------AGGAACTCAGCCGCGGCT-AGGGGTGGTGGGAATCTGCGGTATGACATAGGGTACGGAGGGCCTG-------GGGGTGACAGAGCAGCG-----CCTGCTG--CGGAGGCACAGCCTTCTCA-TTCCG-TGC---GAGT----GACCGAGAGCCTGGA--TCGCGCTCTTGCTGGAGG------AGGGTGCACGTGTG-GACCAGAGGC--TTCCCAGCG---------------------------CCAGGGTGCCAAGTTGT--GGGGGTCCTGGGCCAGGAGCTTCAGAAGAGCCTTACAAGCCAACTTGGAGGAGTGGCAGGGCACAAGTTGAG-AAAAATGACAGCTCACGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16736427 467 - 229590362 AAAG--TCATGCTCACCAGTGAGGTGGGGGAAGTCCCTGCAAAG--AGAGAACCCAAGTAGTAAGTAAGAAACGGGGGCAATTAGAGATTCTGGAGAAGCCA-----GCT-GGAAAATGCACATAC-GGTGAGGAGAAACCATGATCCCGAGACGCTGATATCCAGGAGGGAGCAGCCTCAGAGC--------AGGAACACAGCCGCGGTT-AGGGGTGGTGGGAGTCTGCGATATGACATAAGATACGAAGGGCCTG-------GGGGTGACAGAGCAGAG-----CCTGCTG--CGGAGGCACAGGCTTCTCA-TTCCG-TGC---GAGT----GACCCAGAACCTGGA--TCGCGCTCTTGCTGGAGG------AGGGTGCACATGTG-GACCAGAGGC--TTCCCAGCG---------------------------CCACGGTGCCAAGTTGT--GGGGGTCCTGAGCCAGGAGCTTCAGAAGAGCCTTACAAGCCACCTTGGAGGAGCGGCAGGGCACAGACTGAG-AAAAATGACGGCCCCCGAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223499276 467 - 227556264 AAAG--TCATGCTCACCAGTGAGGTGGGGGAAGTCCCTGCAAAG--AGAGAACCCAAGTAGTAAGTAAGAAACGGGGGCAATTAGAGATTCTGGAGAAGCCA-----GCT-GGAAAATGCACATAC-GGTGAGGAGAAACCATGATCCCGAGACGCTGATATCCAGGAGGGAGCAGCCTCAGAGC--------AGGAACACAGCCGCGGTT-AGGGGTGGTGGGAGTCTGCGATATGACATAAGATACGAAGGGCCTG-------GGGGTGACAGAGCAGAG-----CCTGCTG--CGGAGGCACAGGCTTCTCA-TTCCG-TGC---GAGT----GACCCAGAACCTGGA--TCGCGCTCTTGCTGGAGG------AGGGTGCACATGTG-GACCAGAGGC--TTCCCAGCG---------------------------CCACGGTGCCAAGTTGT--GGGGGTCCTGAGCCAGGAGCTTCAGAAGAGCCTTACAAGCCACCTTGGAGGAGCGGCAGGGCACAGATTGAG-AAAAATGACGGCCCCCGAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16548935 467 - 220367699 aaag--gcatgctCACCAGTGAGGTGGGGGAAGTCCCCGCAAAG--AGAGAACCCAAGTAGTAAGTAAGGAACGGGGGCAATTAGAGATTCTGGAGAAGCCG-----GCT-GGAAAATGCACATAC-GGTGAGGAGAAACCATGATCCTGAGACGCTGATATCCACGAGGGAGCAGCCTCAGAGC--------AGGAACGCAGCCACGGTT-AGGGGTGGTGGGAGTCTGCGATATGACATAAGATACGAAGGGCCTG-------GGGGTGACAGAGCAGAG-----CCTGCTG--CGGAGGCACAGGCTTCTCA-TTCTG-TGC---GAGT----GACCCAGAACCTGGA--TCACGCTCTTGCTGGAGG------AGGGTGTACATGTG-GACCAGAGGC--TTCCCAGTG---------------------------CCACGGTGCCAAGTTGT--GGGGGTCCTGAGCCAGGAGCTTCAGAAGAGCCTTACAAGCCACCTTGGAGGAGCGGCAAGGCACAAATTGAG-AAAAATGACAGCCCCCGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82347920 472 + 85787240 AAAG--GTATGCTCACCAGTGAGGTGGGGGGAGTCCCCGCAAAG--AGAGAACCCAAGTAGTAAGTAAGGAATGGGGGCAATTAGAGATTCTGGAAAATGCACATACGGT-GGAAAATGCACATAC-GGTGAGGAGAAACCATGATCCTGAGACGCTGATATCCAGGAGGGAGCAGCCTCAGAGC--------AGGAACACAGCCGCGGTT-AGGGGTGGTGGGAGTCTGCGATATGACATAAGATGCGAAGGGCCTG-------GGGGTGACAGAGCAGAG-----CCTGCTG--TGGAGGCACAGGCTTCTCA-TTCCG-TGC---GAGT----GACGCAGAACCTGGG--TGGCGCTCTTGCTGGAGG------AGGGTGCACATGTG-GACCAGAGGC--TTCCCAGCG---------------------------CCACGGCGCCCAGCTGT--GGGGCTCCTGAGCCAGGGGCTTCAGAAGAGCCTTACAAGCCACCTTGGAGGAGTGGCAGGGCACAAGTTGAG-GAAGATGACAGCCCCTGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14017639 458 - 49578535 aaAG--GCATGCTCACCAATGAGGAGGGGGAAGCCCCTGCAAAG--AGAAAACCCATGT----AATAAGAAACAGGGGCGATTAGAGATGCTGGAGAAGCCC-----GCT-GACAAATGCACA-GC-TGGGAGGAGAAACCGTGATTCTGAGATGCTGGTACCCAGGAAGGAGCAGCCTCAGAGC---------GGAAAGCAGCCATGGTTCAGAGGTGGTGGGAGTCCGAGATAGGACCGAGGGTAGGAAGGGCTT--------GGGATGAC--AGCAGAG-----CCTGCTG-TTGGAGGCACAGGCTCCTCA-TTCCC-TGC---GAGT----GACAGAGAGCCTGGAG-TCACGCTCTTGCT-GAGG------AGGATGCATGTGTG-CACCTGAGGC--TTTCCAGCG---------------------------CCACCGTGCCGAGTTGT--GGGGGTCCCGAACCAGGAG---TAGAAGAGCTTTACAAGCCACCTTTGAGGAGTGGCAGGGCACACACTGAGAAAAAACTAGTGCCCCTGAC i calJac3.chr19 I 315 I 313 s mm10.chr1 178647594 469 + 195471971 AAAG--ACATGATCACCAAGGACTCTGGAGGAACCCC---------AGAGAACCAGATGGGACAGAGAGGAAAGAGGGTGA--AGGGATTT---------CA-----G-------------------GGTCAAGGGTAACCCTGATCTTGATATGCTGGTATTCAGCAGGA---CACCTCAGAGCTCTACTGAAGAGACGC-----------CAGGGTGATACCTGCTTGTCATATGCTGGCAAGTG-GAAGGGCCAACACAGGTAGGGTGACAGAGTAGAA-----CCCGTTACTCTGAAACCCACACTTTTCCTTTTTG-TGTGGAGAAG----AAAGAAGAGCCCGGAACTTGTTTTCATGGTGAAGT------GCAGAGCATATGTATGTCTCGAGTCCACTTTCAGCAAGATGCAAATACATACACTAGTGACACTCACTATGTTCAGTCATT-GAAGGCCCGAAGATAAGTGAT-GGGGAGGGTGTCACAAGCCAGCTTTTAGAATAAGCAGAA-ACAAGCTGAG-TATTATAGCGCCCCTCAA- i mm10.chr1 I 5 C 0 s canFam3.chr7 36223564 459 + 80974532 AAAGCAACATGCTCCCAAACGAGGTAGGGAAACCCCCACCAAAGACAGAAAACCTACAT-------AAGGAGCAGGAGAGATTAGAGATTCCAGAGAGGCAG-----GCTGGGAAAACGCACCCCCAGGTGATTTGAAACCACAGTCCTGGCGTGTGGATGTCCCCGAGGGAGGAGCCCCCCGGC--------AGGAATACAGAAGTGACT-CAGGGAAGT----------------------GACCCTGGGTGCTTT-------GGGGTTACAGGGCAGAGAAGCAACTGCTTCTCTGAAATACAG--CTCTCA-TTCTGCTGC---GGGTCACAGACAAAGGCCTGGGA--TCCTGTTTTTGCTGGCAAAAACCCAGGCCCGGAATGGG-GTGCATAAGC--TCTCTGAGG------------------------------ATGTGCCACGTCATTGGGGTGTCTCACACAATGAATATTAGAAGATTCTAACAAGCCAGCTTTGAGGAGAAGCAGAGCCCAAGCTGAA-AAAAATTACAGCTCTTGAC i canFam3.chr7 C 0 C 0 e panTro4.chr1 224764086 1390 + 228333871 M a score=16092.000000 s hg38.chr1_KI270759v1_alt 25653 4 + 425601 ACTC s ponAbe2.chr1 226130240 4 - 229942017 ACTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140019890 4 - 143122389 ACTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16736894 4 - 229590362 ACTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223499743 4 - 227556264 ACTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16549402 4 - 220367699 Actc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82348392 4 + 85787240 ACTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14018410 4 - 49578535 ACTC i calJac3.chr19 I 313 C 0 s mm10.chr1 178648063 4 + 195471971 ACCC i mm10.chr1 C 0 C 0 s canFam3.chr7 36224023 4 + 80974532 ACTC i canFam3.chr7 C 0 C 0 e panTro4.chr1 224764086 1390 + 228333871 M a score=68697.000000 s hg38.chr1_KI270759v1_alt 25657 21 + 425601 TTTCTT-CATATTTAAACCAGA s panTro4.chr1 224765476 21 + 228333871 TTTCTT-CATATTTAAACCAAA i panTro4.chr1 M 1390 C 0 s ponAbe2.chr1 226130244 22 - 229942017 TTTCTTACATATTTAAACCAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140019894 21 - 143122389 TTTCTT-CATAGTTAAACCAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16736898 21 - 229590362 TTTCTT-CATATTTAAAACAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223499747 21 - 227556264 TTTCTT-CATATTTAAAACAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16549406 21 - 220367699 tttctt-catatttaaaCCAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82348396 21 + 85787240 TTTCTT-CATATTTAAACCAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14018414 21 - 49578535 TTTCTT-TATATGTAAACCAAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178648067 21 + 195471971 GTTCTC-AGTATGGAAACTTAA i mm10.chr1 C 0 C 0 s canFam3.chr7 36224027 17 + 80974532 ----TG-tatatttaaaataaa i canFam3.chr7 C 0 I 248 a score=209896.000000 s hg38.chr1_KI270759v1_alt 25678 73 + 425601 GGACCAAACAACTCAAGGTGCT-CTTAAGAAAAGCCCGCAGTCGTCCAAGACTTTAAATGAAAACGCGGATCTG s panTro4.chr1 224765497 73 + 228333871 GGACCAAACAACTCAAGGTGCT-TTTAAGGAAAGCCCGCAGTCGTCCAAGACTTTAAACGAAAACACGGATCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226130266 73 - 229942017 GGACCAAACAACTCAAGGTGCT-TTCAAGGGAAGCCCGCGGTCATCCAAGACTTTAAACGAAAACGCGGATCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140019915 73 - 143122389 GGACCAAACAACTCGAGGTGCT-CTTAAGGAAAGCCCGCGGTCATCCAAGACTTTAAACGAAAACGCAGATCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16736919 73 - 229590362 GGACCAAACGACTCAAGGAGCT-CTTAAGGAAAGCCTGCAGTCATCCAAGACTTTAAACGAAAATGCAGACCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223499768 73 - 227556264 GGACCAAACGACTCAAGGAGCT-CTTAAGGAAAGCCTGCAGTCATCCAAGACTTTAAACGAAAATGCAGACCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16549427 73 - 220367699 GGACCAAACGACTCAAGGAGCT-CTTAAGGAAAGCCTGCAGTCCTCCAAGACTTTAAACGAAAATGCAGACCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82348417 73 + 85787240 GGACCAAATGACTCAAGGAGCT-CTTAAGGAAAGCCTGCAGTCATCCAAGACTTTAAACGAAAATGCAGACCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14018435 70 - 49578535 GGCCCCAACA--TCAGGGTGCT-CTTAAGGAAAGCCCTCAATCACCCAAGACGTTAAATG-AAATGCAGATCTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178648088 71 + 195471971 AGACTGAA--ACTCCAAGAACTGCCGAAGAAAAACACCCAGGAGT-CAAGACTATGGAAGAAAGCACGGGCTtg i mm10.chr1 C 0 I 2193 e canFam3.chr7 36224044 248 + 80974532 I a score=15610.000000 s hg38.chr1_KI270759v1_alt 25751 6 + 425601 AAAATG s panTro4.chr1 224765570 6 + 228333871 AAAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226130339 6 - 229942017 AAAATG i ponAbe2.chr1 C 0 I 2040 s nomLeu3.chr5 140019988 6 - 143122389 AAAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16736992 6 - 229590362 AAAATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223499841 6 - 227556264 AAAATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16549500 6 - 220367699 AAAATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82348490 6 + 85787240 AAAATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14018505 6 - 49578535 AAAATT i calJac3.chr19 C 0 C 0 e mm10.chr1 178648159 2193 + 195471971 I e canFam3.chr7 36224044 248 + 80974532 I a score=1718989.000000 s hg38.chr1_KI270759v1_alt 25757 853 + 425601 GGTGAAGGAAATTTGAGGTACCCACATTTGCCAGAACATCGCGTCCACCCTGAAGTAAGGTGCTACCTGTGGTGGACACCTTTGTGACACTTCGTCTCTAAGTGAGATAGGATTTCCAGGGAGCGTGGGACTGTCCCTGGATTGGTGGCTGCTGAGGAAGGA-TTTATTTTCCATGGAGCTCTAGTTGGCTGTGAGATTTTAGGTCAACAACTGGCTACAGATGATAGATGGAGAGATAGCCCCTGTACAATATTCACTGTGGACTATTATTATATAGTGCATAGTAATAAGACAATGTACAAAATGTGATAGCGTACACTTCTTTCGTATGTAGAAAATGCAGGGATTTTTAAAAAGTGAGATTTACTTTGGTCTGAAG---TCCTCATCAGGAggccaggcgtggtggctcaggcctgtaatcccagcactttgggaggcgaggtgggcagatcacttgaggtcaggagttcgagactagcctggccaacatggcaaaaccccatctctactataaatacaaaaatcagccgggcgtggtggtgggtgcctgtagtctcagctagtcgggaggctgaggcaggagaatcacttgaatgcaggaaatagagattgcagtgagccaagatggcaccactgcattccagctggggcgacagaacaagactctgtctcgaaataaataaata-----------gcaataaaaaaTGAAGTCCTCATCAGGAAATGCAGTAAGCAGATGGTTATGAACTGGATTACGCTGCTGCAG-ACCGTCTTCTAAGACCATTTGTGTATCAGTGGTTGGAGGAGTGTGTAGGC-CAACCTCTCTTTGAACTGTTGTAAATTCATTCAGGCAGATGACTA s panTro4.chr1 224765576 853 + 228333871 AGTGAAGGAAATTTGAGGTACCCACATTTGCCAAAACATCGTGTCCACCCTGAAGTAAGGTGCTACCTGTGGCAGACACCTTTGTGACACTTCATCTCTAAGTGAGATAGGATTTCCAGGGAGCGTGGGACTGTCCCTGGATTGGTGGCTGCTGAGGAAGGA-TTTATTTTCCATGGAGCTCTGGTTGGCTGTGAGATTTTAGGTCAACAACTGGCTACAGATGATAGATGGAGAGATAGCCCCTGTACAATATTCACTGTGGACTATTATTATATAGTGCATAGTAATAAGACAATGTACAAAATGTGATAGCGTACACTTCTTTCGTATGTAGAAAATGCAGGGATTTTTAAAAAGTGAGATTCACTTTGGTCTGAAG---TCCTCATCAGGAggccaggtgtggtggctcaggcctgtaatcccagcactttgggaggcgaggtgggcagatcacttgaggtcaggagttcgagactagcctggccaacatggcaaaaccccatctctactataaatacaaaaatcagccgggcgtggtggtgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaatgcaggaagtagagattgcagtgagccaagatggcagcactgcattccagccggggtgacagaacaagactctgtctcaaaataaataaata-----------gcaataaaaaaTGAAGTCCTCATCAGGAAATGCAGTAAGCAGATGGTTATGAACTGGATTACGCTGCTGCAG-ACAGTCTTCTAAGACCATTTGTGTATCAGTGGTTGGAGGAGTGTGTAGGC-CAACTTCTCTTTGAACTGTTGTAAATTCATTCAGCTAGATGACTA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140019994 848 - 143122389 GGTGAAGGAAA-TTGAGGTACCCACATTTGCCAAAACGTCGCGTCCA-CCTGAAGTAAGCGGCTACCGGTGGCGGACACCTTTGTGACGCTTCATCTCTAAGTGAGATAGGATTTCCAGGGAGCATGGGACTGTGCCTGGATTGGTGGCTGCTGAGGAAGGA-TTTATTTTCCACGGAGCTCTGGTTGGCTGTGAGATTTTAGGTCGACAACTGGCTGTAGATGATAGAGGGAGAGATAGCCCCTGCACAGTATTCACTGTGGAC---TATTATATAGTGCATAGCAATAAGACAATGTACAAAATGTGATAGTGTATACTTCTTTCATACATAGAAAATGCAGGGATTTTTAAAAAGTGAGATTTACTTTGGTCTGAAG---TCCTCATCAGGAggccaggcatggtggctcaggcctgtaatcccagcactttgggaggcgaggcgggcagatcacttgaggtcaggagttcgagactagcctggccaacatggcgaaaccccatctctactataaatacaaaaatcagccgggcgtggtggcaggtgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacgcaggaagtagaggttgcagtgagctgagatggcaccactgcattccagcctgggcaacagagcaagactctgtctcacgataaataaata-----------gcaataaaaaaTGAAGTCCTCATCAGGAAATGCAGTAAGCAGATGATTATGAACTGGATTACACTGCTGCAG-ACCATCTTCTAAGACCATTTGTGTATCAGTGGTTGGAGGAGTGTGCAGGC-CAACCTCTCTTTGAACTGTTGTAAATTCATTCAGGCAGATGACTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16736998 812 - 229590362 GGTGAAGGAAATTTGGGGTACCCACGTTTGCCAAAACATTGTGTCCACCCTGAAGTAAGGTGCTACCGGTGGCGGACACCTTTGTGCCACTTCATCTCTAAGTGAGATAGGATTTCCGAGGAGCGTGGG--------------------TGCTGAGGAAGGACTTTATTTTCCATGGACCTCTGGTCGACTGTGAGATTTTAGGTCAACAGCTGGTTGTAGATGATACAGGGAGAGACGG-CCCTGTACGATGTTCACTGTGGACTGTGATTACATAGTGCATAGTAACAAGACAGTATACAAAATGGGATAGTGTATACTTCTTTCGTATGTAGAAAATGCAGGGATTTTTAAAAAGTGAGATTTACTTTGGTCGGAAG---TCCTCATCAGGAggccaggcatggtggctcaggcctgtaatcccagcactttgggaggtcaggtgggcagatcacttgaggtcaggagttcgataccagcctggccaacatggcgaaaccccatctctactataaatacaaaaatcagcccagtgtagtggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagccgagatggtgccactgcattccag---------------------cTGTCTCAAAATAAATACATA-----------ACAATAAAAAATGAAGTCCTCATCAGGAAATGCAGTCAGCAGATGGTTATGAACTGGATTATGCTGCTGCAG-ACTGTCTTCTAAGACCATTTGTGTATTGGTGGTTGGAGGAGTGTGTAGGT-TAACGTTTCTTTGAGCTGTTGTAAATTCATTCAGGCAGATGACGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223499847 812 - 227556264 GGTGAAGGAAATTTGGGGTACCCACGTTTGCCAAAACATTGTGTCCACCCTGAAGTAAGGTGCTACCGGTGGCGGACACCTTTGTGCCACTTCATCTCTAAGTGAGAGAGGATTTCCGAGGAGCGTGGG--------------------TGCTGAGGAAGGACTTTATTTTCCATGGACCTCTGGTCGACTGTGAGATTTTAGGTCAACAGCTGGTTATAGATGATACAGGGAGAGACAG-CCCTGTACGACGTTCACTGTGGACTGTTATTACATAGTGCATGGTAACAAGACAGTGTACAAAATGGGATAGTGTATACTTCTTTCGTATGTAGAAAATGCAGGGATTTTTAAAAAGTGAGATTTACTTTGGTCGGAAG---TCCTCATCAGGAggccaggcatggtggctcaggcctgtaatcccagcactttgggaggtcaggtgggcagatcacttgaggtcaggagttcgataccagcctggccaacatggcgaaaccccatctctactataaatacaaaaatcagcccagtgtagtggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagccgagatggtgccactgcattccag---------------------cTGTCTCAAAATAAATACATA-----------ACAATAAAAAATGAAGTCCTCATCAGGAAATGCAGTCAGCAGATGGTTATGAACTGGATTATGCTGCTGCAG-ACTGTCTTCTAAGACCATTTGTGTATTGGTGGTTGGAGGAGTGTGTAGGT-TAACGTTTCTTTGAGCTGTTGTAAATTCATTCAGGCAGATGATGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16549506 832 - 220367699 GGTGAAGGAAATTTGGGGTACCCACGTTTGCCAAAACATCGTGTCCACCCTGAAGTAAGGTGCTACCGGTGGCGGACACCTTTGTGCCACTTCACCTCTAAGTGAGATAGGATTTCCGAGGAGCGTGGGACTGTCCCTGGGTCGGCGGCTGCTGAGGAAGGACTTTATTTTCCATGGAGCTCTGGTCGACTGTGAGATTTTAGGTCAACAGCCGGTTATAGATGATACAGGGAGAGACAG-CCCTGTGCGATGTTCACTGTGGACTGTTATTATATAGTGCATAGTAACAAGACAGTGTACAAAATGGGATAGTGTATACTTCTTTCGTATGTAGAAAAtgcagggatttttaaaaagtgagatttACTGTGGTCGGAAG---TCCTCAtcaggaggccaggcatggtggctcaggcctgtaatcccagcactttgggaggtcaggtgggcagatcacttgaggtcaggagtttgagaccagcctggccaacatggcgaaactccatctctactataaatacaaaaatgagcccagtgtagtggccggcgcctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagccgagatggtgccactgcattccag---------------------ctatctcaaaataaatacata-----------acaataaaaaatgaagtccTCATCAGGAAATGCAGTCAGCAGATGGTTATGAACTGGATTATGCTGCTGCAG-ACCGTCTTCTAAGACCATTTGTGTATTGGTGGTTGGAGGAGTGTGTAGGT-TAACATTTCTTTGAACTGTTGTAAATTCATTCAGGCAGATGACGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82348496 830 + 85787240 GGTGAAGGAAATTTGGGGTACCCACGTTTGCCAAAACATCGTGTCCACCCTGAAGTAAGGTGCTACCGGTGGCGGACACCTTTGTGCCACTTCATCTCTAAGTGAGATAGGATTTCCAAGGAGCGTGGGACTGTCCCTGGGTCGGTGGCTGCTGAGGAAGGATTCTATTTTCCATGGAGCTCTGGTCGACTGTGAGGTTTTAGGTCAACAGCTGGTAATAGATGATACAGGGAGAGACAG-CCCTGTACGATGTTCACTGTGGACTGTTATTACATAGTGCATAGTAACAAGACAGTGTACAAAATGGGATAGTGTATACTTCTTTCATAGGTAGAAAATGCAGGGATTTTTAAAAAGTGAGATT--CTTTGGTTGGAAG---TCCTCATCAGGAggccaggcatggcggctcaggcctgtaatcccagcactttgggagcccaggtgggcagatcactggaggtcaggagtttgagaccatcctggccaacatggcgaaaccccatctctactataaatacaaaaatcagcccagtgtagtggccggtgcctgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagccgagatggtgccaccgcattccag---------------------cTGTCTCAAAATAAATAAATA-----------ACAATAAAAAATGAAGTCCTCATCAGGAAATGCAGTCAGCAGATGGTTATGAACTGGATTATGCTGCTGCAG-ACCGTCTTCTAGGACCATGTGTGTATTGGTGGCTGGAGGAGTGTGTAGGT-TAACATTTCTTTGAACTGTTGTAAATTCATTCAGGCAGATGACGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14018511 784 - 49578535 GGTGCCGGAAATGTGAGGTAAGCATATTTGCCAAAACATGGCGTCCACCCTGAAGTAGGGGGCTACCTGTGGCGGGCACTTTTGTGACGCTTCAGCTCTAAGTGAGAAGGGATTTCCGGGGAGAATGGGACTGTCCT--GGATGGTGGCTGCTGAGGAAGGACTTTATTTTCCATGGAGCTCTGGTGGGCTGTGAGA--------------CTGGCTGTAGATGA-------AGCAGTATCCCCTGCACAATATTCACTGTGTACTGTTACTGTATAGCGCGTGGTACTAAGATAACGTCC---ATGTGATAGAGTATACTTCGTTCATAC-------------GGATTTTTAAAAAGTGAGGTTTAGTTTGGTCTGAAGTCTTCCTCATCAGGAggccgggcgtggtgtcgcaggtctgtaatcccagcactt--------------------------gaggtcaggagttcgagactagcttggctaacatggtgaaactccgtctc-----taagtacaaaaatcagctggttgtggtggcatgtggctgtaatcccagctacttgggaggctgaggcaggagaatcacctgaacccgggaggtggaggtggcagggagctgagatcgcgctgctgcactccag-cctggcgacagagcaagactctgactcaaaatgaataaaTACATACATATATACAAATAAAAATAAAGTCCTCATCAGGAAATGCAGTAAGCCCACGGTTTTGAACTGGGTTAACCTGCCACGGCACCGTCTTCTAAG-CCGTTGGTGTGCTGGC-GTTGGAGGAGCGTGGAGGTAAAACCTTTCTTTGAAC-------------TTCAGGCAGATGATTA i calJac3.chr19 C 0 C 0 e mm10.chr1 178648159 2193 + 195471971 I e canFam3.chr7 36224044 248 + 80974532 I e ponAbe2.chr1 226130345 2040 - 229942017 I a score=503897.000000 s hg38.chr1_KI270759v1_alt 26610 220 + 425601 AAAATGACATAACCCCCACCCGTCTCCCAAGGGGGCAGGTGAGAGGTGGGTATAGCATTTCAGGTCAGAATGGGGGTTCTCACAATTCATCAGTGTTCGCTCCCCAAATCTGGAT-----TTACAGT-CTGAAATGTTCTTTCTTTAGCCTCTGAATGC---CAGAAGTAAGCACTTCCTTTTAATTTTTATTTTTCCCTAGCAAATTCTTTAGTGAGCAAGCTTTTGT s panTro4.chr1 224766429 220 + 228333871 AAAATGACATAACCCCCACCCATCTCCCAAGGGGGCAGGTGAGAGGCGGGTATAGCATTTCAGGTCAGAATGGGGGTTCTCACAGTTCATCAGTGTTTGCTCCCCAAATCTGGAT-----TTGCAGT-CTGAAATGTTCTTTCTTTAGCCTCTGAATGC---CAGAAGTAAGCACTTCCTTTTAATTTTTATTTTTCCCTAGCAAATTCTTTAGTGAGCAAGCTTTTGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140020842 219 - 143122389 AAAATGACATAACCCCCACCCATCTCCCAA-GGTGCAGGTGAGAGGTGGGTATAGCATTGCAGGTCAGAATGGGGGTTCGCACAATTCATCAGTATTCACTCCGCAAATCTGGAT-----TTGCAGT-CTGAAATGTTCTTTCTTTAGCCTCTGAATGC---CAGAAGTAGGCACTTCCTTTTAATTTGTATTTTTCCGTAGCAAATTCTTTAGTGAGCGAGCTTTTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16737810 218 - 229590362 AAAATGACATAACCCCCACCCGTCT-CCAG-GGGGCAGGTGAGAGGTGGGTATAGCATTTCAGGTCAGAATGGGGGTTCTCACAATTCATCAGTATGCACTCCCCAAATCTGGAT-----TTGCAGT-CTGAAATGTTCTTTCTTTAGCCTCTGAATGC---CAGAAGTAAGTTCTTTCTTTTAATTTTTATTTTTCCCTAGCAAATTCTTTAGTGAGGGAGATTTTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223500659 219 - 227556264 AAAATGACATAACCCCCACCCGTCTCCCAG-GGGGCAGGTGAGAGGTGGGTATAGCATTTCAGGTCAGAATGGGGGTTCTCACAATTCATCAGTATGCACTCCCCAAATCTGGAT-----TTGTAGT-CTGAAATGTTCTTTCTTTAGCCTCTGAATGC---CAGAAGTAAGTTCTTTCTTTTAATTTTTATTTTTCCCTAGCAAATTCTTTAGTGAGGGAGATTTTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16550338 219 - 220367699 AAAATGACATGACCCCCACCCGTCTCCCAG-GGGGCAGGTGAGAGGTGGGTATAGCATTTCAGGTCAGAATAGGGGTTCTCACAATTCATCAGTATGCACTCCCCAAATCTGGAT-----TTGCAGt-ctgaaatgttctttctttaGCCTCTGAATGC---CAGAAGTAAgtactttcttttaatttttatttttccctagcAAATTCTTTAGTGAGGGAGCTTTCGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82349326 219 + 85787240 AAAATGACATAACCCCCACCTGTCTCCCAG-GGGGCAGGTGAGAGGTGGGCATAGCATTTCAGGTCAGAATGGGGGTTCTCACAATTCATCAGTATGCACTCCCCAAATCTGAAT-----TTGCAGT-CTGAAATGTTCTTTCTTTAGCCTCTGAATGC---CAGAAGTAAGTACTTTCTTTTAATTTTTATTTTTCCCTAGCAAATTCTTTAGTGAGGGAGCTTTTAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14019295 210 - 49578535 AAAATGGCACAACCCCCAGCCATCTCCCAA-GGGGCAGGTGAGAGGTGGCT-TAGCATCTCAGGTCAGAGT-GGGCTTCTCCCAGTTCATTAGTGTTCACTCCCT-GATCTGCAT-----TTGC-GT-CTGAAAAGAT-----GCCAGAAGTAAGATGC---CTGAAGTAAGCACATCCTTTCCTTTTTTATTTTTCCCTGGCCAATTCTTTAGGGAGGGAGCTTTTGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178650352 200 + 195471971 AAAGTGACCTAACCCTCTCCCGTCTCTCAA-GGTTCAGATGGGCAGTGGGC--------------TGGAATGGGGATTCTC----TTTGTGAATGCTCACTCCTCAAATCAAGACAGCAATTGAAATGCTATTATATTTTTTGTTTGGCCTCAAAGGTCATACATAGGTGAGCACTTCCTTTT------TATTTTGCC----TAAATTCTGTACTGAAGGAGCCTCTGC i mm10.chr1 I 2193 C 0 e canFam3.chr7 36224044 248 + 80974532 I e ponAbe2.chr1 226130345 2040 - 229942017 I a score=640267.000000 s hg38.chr1_KI270759v1_alt 26830 260 + 425601 CTGATCTAACCTTTCTCTCCCCTGTTGGTTT-CAGCCTCCACCTTTGTCTTGCCTTTCCCCC----C-AC-CACTTACTCCCACCCCCACTGCTGACATGTTGTGAGT----------CGTCTCCTGGAAGCCACAGCCCTGCTGGTTTTCACTCAGGGTGGT-GGGTCC----------CTTATGTGTGT---CATGCTTTGCACAAGACAGCGAGGAGTGCTGGCTGGTTTGCTGGCGCCCAGCACTATGACCTGGCTTCCGTTCATGGCTCATAAGTTTCCAGTCTTT s panTro4.chr1 224766649 261 + 228333871 CTGATCTAACCTTTCTCTCCCCTGTTGGTTT-CAGCCTCCACCTTTGTCTTGCCTTCCCCCC----CTAC-CACTTACTCCCACCCCCACTGCTGACGTGTTGTGAGT----------CGTCTCCTGGAAGCCACAACCCTGCTGGTTTTCACTCAGGGTGGT-GGGTCC----------CTTATGTGTGT---CATGCTTTGCACAAGACAGCGAGGAGTGCCGGCTGGTTTGCTGGCCCCCAGCACTATGACCTGGCTTCCATTCATGGCTCATAAGTTTCCAGTCTTT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140021061 259 - 143122389 CTGATCTAAGCTTTCTCTCCCCCGTTGATTT-CAGCCTCCACCTTTGTCTTGCTTTCCCCCC------AC-CACTTACTCCCACCCCCACTGCTGACGTGTTGCGAGT----------CGCCTCCTGGAAGCCGCAGCCCTGCTGGTTTTCACTCAGGGTAGTGGGGTCC----------CTTATGTGTGT---CGAGCTTTGCACAAGACAGCAAGGAGTGCCGGCTGGTGTGCTGGT-CCCAGCACTATGACCTGGCTTCCGTTCCTGGCTCATGAGTTTCCAGGCTTT i nomLeu3.chr5 C 0 I 3 s rheMac3.chr1 16738028 261 - 229590362 CTGATCTAACCTTTCTCTCCCCCGTTGGTTT-CAGCCTCCACCTTTGTCTTGCCTTTCCCCC----C-AC-CGCTTACTCCCACCCCCACTGCTGACATGTCGTGAGT----------CATCTCCCGGAAGTCACAGCCCTGCTGGTTTTCACTCAGGGTGGTGGTGTCC----------CTTATGTGTGT---CATGCTTTGCACAAGACAGCGACGAGTGCCGGCGGGTTTGCTGGCTCCCAGCACTGTGACCTGGCTTCCGGTCATGGCTCATGAGTTTCCGGTCTTT i rheMac3.chr1 C 0 I 3 s macFas5.chr1 223500878 261 - 227556264 CTGATCTAACCTTTCTCTCCCCCGTTGGTTT-CAGCCTCCACCTTTGTCTTGCCTTTCCCCC----C-AC-CGCTTACTCCCACCCCCACTGCTGACATGTCGTGAGT----------CGTCTCCCGGAAGTCACAGCCCTGCTGGTTTTCACTCAGGGTGGTGGTGTCC----------CTTATGTGTGT---CATGCTTTGCACAAGACAGCGACGAGTGCCGGCGGGTTTGCTGGCTCCCAGCACTGTGACCTGGCTTCCGGTCATGGCTCATGAGTTTCCGGTCTTT i macFas5.chr1 C 0 I 3 s papAnu2.chr1 16550557 261 - 220367699 CTGATCTAACCTTTCTCTCCCCCGTTGGTTT-CAGCCTACACCTTTGTCTTGCCTTTCCCCC----C-AC-CACTTACTCCCACCCCCACTGCTGACATGTCATGAGT----------CGTCTCCCGGAAGTCACAGCCCTGCTGGTTTTCACTCAGGGTGGTGGTGTCC----------CTTATGTGTGT---CATGCTTTGCACAAGACAGCGACGAGTGCCGGCGGGTTTGCTGGCTCCCAGCACTATGACCTGGCTTCCGGTCATGGCTCATGAGTTTCCGGTCTTT i papAnu2.chr1 C 0 I 3 s chlSab2.chr25 82349545 261 + 85787240 CTGATCTAACCTTTCTCTCCCCCATTGGTTT-CAGCCTCCACCTTTGTCTTGCCTTTCCCCC----C-AC-CACTTATTCCCACCCCCACTGCTGACATGTCGTGAGT----------CGTCTCCCGGAAGTCACAGCCCTGCTGGTTTTCACTCAGGGTGGTGGTGTCC----------CTTATGTGTGT---CATGCTTTGCACAAGACAGCGACGAGTGCCGGCGGGTTTGCTGGCTCCCAGCACTATGACCTGGCTTCCGGTCATGGCTCATGAGTGTCCGGTCTTT i chlSab2.chr25 C 0 I 3 s calJac3.chr19 14019505 261 - 49578535 CTGATCTAACCTTTCTCTCCCTCTTTGGGTT-CACTCTCCACCTTTGTCTGGGTTTTCCCCC----T-GC-CACGTACCAACACCCCCGCCGCTGGCGTGTTGTGCGT----------TGTCTCCCGGAAGCCTTAGACCTGCTGGTTTTCACACTGGGTGGTGGAGTCC----------CTCACGTGGGT---TGTGCTTTGCACGAGACAGTGAGGAGTCCCGGCTGGTTTGCGGGCTCCCTGCCTTGTGACCTGGCTTCCTTTCATGGCCTATGAGTTTCTGTTTTTT i calJac3.chr19 C 0 I 3 s mm10.chr1 178650552 247 + 195471971 CTACTCTAATTGTCCTTCACCTGGTCAGCTTCCACCCCCTGTCTTTCTCTTATCTTTCTCGC----C-ACACACCTATTCTGGACCCCGCAGCTG--------TGCAT----------TG--TCCTGACAGTTTCAGTCCCTCTAGAAGTTGTACTGGTAACCTGTGCTC----------CCTA-GTGAGT---GCTCCTGCTCAC-ATACAGCGAGGGGGGCTGGCTAGTTTGTTGGCTCCTCA---TGGGAACTTGCTTTTATTCATGGTCCATCACTTTCATATTCT- i mm10.chr1 C 0 C 0 s canFam3.chr7 36224292 273 + 80974532 CTGACATCACATCACTGTCCCCTGGAAGCCA-CAGTCCCTGC---------ACATCTCCCCCTGCAC-AT-CCCCTGTTCCCGCCTCCCCTGCCCAC----TGTGAACATCACCTTTGTGTCTCCC-ATAGCCACAGCCCCTCCAAGTCCCACAAGGGTTTGTGGGGTCCTCCCATCAGTCTTCTGTGCTTGTCTATACTTTGCATAAGACGACAAGGATTCTTGCCTGGTTTGCCAGCTTCAGGCACTGT-ACTTAGCTTCTGTTTATGGCTCATCACTCTGCTGTGTTC i canFam3.chr7 I 248 C 0 e ponAbe2.chr1 226130345 2040 - 229942017 I a score=10560.000000 s hg38.chr1_KI270759v1_alt 27090 3 + 425601 GGG s panTro4.chr1 224766910 3 + 228333871 GGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226132385 3 - 229942017 GGG i ponAbe2.chr1 I 2040 C 0 s nomLeu3.chr5 140021323 3 - 143122389 AGG i nomLeu3.chr5 I 3 C 0 s rheMac3.chr1 16738292 3 - 229590362 AGG i rheMac3.chr1 I 3 C 0 s macFas5.chr1 223501142 3 - 227556264 AGG i macFas5.chr1 I 3 C 0 s papAnu2.chr1 16550821 3 - 220367699 AGG i papAnu2.chr1 I 3 C 0 s chlSab2.chr25 82349809 3 + 85787240 AGG i chlSab2.chr25 I 3 C 0 s calJac3.chr19 14019769 3 - 49578535 AGG i calJac3.chr19 I 3 I 301 s canFam3.chr7 36224565 3 + 80974532 AGG i canFam3.chr7 C 0 C 0 e mm10.chr1 178650799 0 + 195471971 C a score=861290.000000 s hg38.chr1_KI270759v1_alt 27093 271 + 425601 ----GTATCTGTGGCTTTTATGTCATCTCACTGCCTCTCCTCGGCACA--GGGACTGGCTTTGCT-GTCGATGGCA-GACT-TAAGGCAAGTGCAGAAG-GGAAGAGGACTGCTCAGAAACATCTCCTGGAGACAC--T--GTATTTTCAA--TGGGTCTCTCCAAAT----C-----CAGCAGAAAAAGGGCAAAATGTAGGGAAGGGGTGCCAACATGAAGCCATCATGGTGGTGCCA-AGGATTTATTGGGCAGCAAGAATCAAAGGACTGGTGGGAAAGAAGAAA-----------------------------------------------------------TCAGAGTC s panTro4.chr1 224766913 271 + 228333871 ----GTATCTGTGGCTTTTATGTCATCTCACTGCCTCTCCTCTGCACA--GAGACTGGCTTTGCT-GTCGATGGCA-GACT-TAAGGCAAGTGCAGAAG-GGAAGAGGACTGCTCAGAAACATCTCCTGGAGACAC--T--GTATTTTCAA--TGGGTCTCTCCAAAT----C-----CAGCAGAAAAAGGGCAAAATGTAGGGAAGGGGTGCCAACATGAAGCCATCATGGTGGTGCCA-AGGATTTATTGGGCAGCAAGAATCAAAGGACTGGTGGGAAAGAAGAAA-----------------------------------------------------------TCAGAGTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226132388 269 - 229942017 ----GTATCTGTGGCTTTTATGTCATCTCACTG-CTCTCCTCTGCACA--GGGACTGGCTTTGCT-GTTGATGGCA-GACT-TAAGACAAGTGCAGAAG-GGAAGAGGACTGCTCAGAAACATCTCCTGGAGACAC--T--GTATTTTCAA--TGGGTCTCTCCAAAT----C-----CAGCAGAAAAAGGGCAAAATGTAGGGAAGGGGTGCCAACATGAAG-CATCATGGTGGTGCCA-AGGATTTACTGGGCAGCAAGACTCAAAGGACTGGTGGGAAAGAAGAAA-----------------------------------------------------------TCAGAGTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140021326 271 - 143122389 ----GTATCTGTGGCTTTTATGTCATCTCGCTGCCTCTCCTCTGCACA--GGGACTGGCTTTGCT-GTCGATGGCA-GACT-TGAGGCAAGTGCAGAAG-GGAAGAGCACCACTCAGAAACAGCTCCTGGAAACAC--T--GTATTTTCAG--TGGGTCTCTCCAAAT----C-----CAGCAGAAAAAGGGCAAAATGTAGGGAAGGGGCGCCAACATGAAGCCGTCATGGTGGTGCCA-AGGATTTATTGGGCAGCAAGAATCAAAGGACTCTTGGGAAAGAAGAAA-----------------------------------------------------------TCAGAGTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16738295 273 - 229590362 ----GTATCTGTGGCTTTTATGTCGTCTTGCTGCTTGCCCTCTGCACG--GGGACTGGCTTTGCT-GCCGATGGCA-GAGT-TGAGGCAAGTGCAGAAG-AGAAGAGGACTGCTCAGAAACGTCTCCGGGAGACAC--T--GTATTTTCAATGTGGGTCTCTCCAAAT----C-----CAGCAGAAAGAGGGCAAAATGTAGGGTAGGGGTGCCAACGTGAAGCCTTCATGGTGGTGCCA-AGGATTTATCGGGCAGCAAGAATCAAAGGACTGGTGGGAAAGAAGAAA-----------------------------------------------------------TCAGAGTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223501145 273 - 227556264 ----GTATCTGTGGCTTTTATGTCGTCTTGCTGCTTGCCCTCTGCACA--GGGACTGGCTTTGCT-GCCGATGGCA-GAGT-TGAGGCAAGTGCAGAAG-AGAAGAGGACTGCTCAGAAACGTCTCCGGGAGACAC--T--GTATTTTCAATGTGGGTCTCTCCAAAT----C-----CAGCAGAAAGAGGGCAAAATGTAGGGTAGGGGTGCCAACGTGAAGCCTTCATGGTGGTGCCA-AGGATTTATCGGGCAGCAAGAATCAAAGGACTGGTGGGAAAGAAGAAA-----------------------------------------------------------TCAGAGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16550824 273 - 220367699 ----GTATCTGTGGCTTTTATGTCGTCTTGCTGCTTGCCCTCTGCACA--GGGACTGGCTTTGCT-GCCGATGGCA-GAGT-TGAGGCAAGTGCAGAAG-AGAAGAGGACTGCTCAGAAACGTCTCCTGGAGACAC--T--GTATTTTCAGTGTGGGTGTCTCCAAAT----C-----CAGCAGAAAGAGGGCAAAATGTAGGGTAGGGGTGCCAACATGAATCCTTCATGGTGGTGCCA-AGGATTTGTCGGGCAGCAAGAATCAAAGGACTGGTGGGAAAGAAGAAA-----------------------------------------------------------TCAGAGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82349812 271 + 85787240 ----GTATCTGTGGCTTTTATGTCGTCTTGCTCCCTGCCCTCTGCACA--GGGATTGGCTTTGCT-GCTGATGGCA-GAGT-TGAGGCAAGTGCAGAAG-AGAAGAGGACTGCTCAGAAACGTCTCCTGGAGACAC--T--GTATTTTCAGTGTGGATCTCTCCAAAT----C-----CAGCAGAAAGAGGGCAAAATGTAGGGTAGGTGTGCCAACATGAAGCCTTCATGGTGGTGCCA-AGGATTTATCGGGCAGCAAGAATCAAAGGACTGGTGGGAAAGAAGAAA-----------------------------------------------------------TCAGAG-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14020073 276 - 49578535 ----GTATCTGTGGCTTTTATGTCATCTTGCTGCCTCTCCTTTGCACAGGGGGACTGGCTTTGCT-GTCGATGGCA-GAGC-TGAGGCAAGTGCAGAAG-GGAAGCGTAGTGCTCAGAAGCATCTCCTGGAGACGCTGT--GTATTTTCAATGTGGGTCTCTCCAAAT----C-----CGGCAGAAAGAAGGCAAAGTGTAGGGT-GGGGTACCAACACGAAGCCATCATGGTGGCACCA-AGGATTTCTTGGGCAGCAGTAATCTAAGGACTGGTGGGAAAGAAGAAA-----------------------------------------------------------TCAGAGTC i calJac3.chr19 I 301 C 0 s mm10.chr1 178650799 256 + 195471971 ---------------GTTTGTATCGCATTAAGGC---TGCTCTGCACA--GGTTCTGGCTTTGCTGGTCCATGGCAGGACT-AGAGGCGAGC-CTGTGG-GGAAGTGAGCTTCTCAGCGGAGAATCCTGGAGACTC--TGAGTGCATCTGGCATTGGTCTATCCAAAC----CAAAGTCAATGGAGTCGGAGTAAAG-GTAGGGTA-GTGTGCCAATGTAAAA-CTTCCTGG-GAACCGA-AAGGTGTACTGGGCAGCAAAGATCAGA-CCTTGGTGAGAACTAAGA-----------------------------------------------------------------AGAC i mm10.chr1 C 0 C 0 s canFam3.chr7 36224568 327 + 80974532 GAGGGTGTCTGTGGCTTTCAC-TCATCATGCTGCCTCTTATCCGTATA--GGGGCTGGTTTTGTGGGTCAGTGGAA-GGGTGAGAGGCGAGTTCAGGAGTGGGAATGGGCTGCTTAGGAACATCTCCTGGAGAGAC--T--GTGGT---------AGTCTACCCACATAGCAT-----CCAAAGGATGTAGGCAAA-TGTGGGCCA-GGGTG-----ATGGAACCAGGGTCGTGGTACGAGAGGATATACTGTGTAGTCAAAATCAGAGGACTGGTAGAAAATAAGAAAGTGGAggggcacctgggtggctcagcggtgagcgtctgcctttggctcagatcgtgatctcggggtc i canFam3.chr7 C 0 I 135 a score=1326013.000000 s hg38.chr1_KI270759v1_alt 27364 480 + 425601 AGCATGCAGGAGAAAAGCAGAACGGAGACAGTGTGGCTGGATTGATAGAATACTGGAAGGCCCaacagatagtcccacacccatgttcacagc-acattagc----cacgattagccaaaaga--gggaagcaacaccagggcctgtcaccgtataaatggataaacgagatgtggtctctacatacaatagaatgttgtttcagccgtaaaaaggaatgaaattcggacacacgctacagcctggatgaaccttgaagacatgatgttaagtcgaatcagccacagtcacaaa-agcgcaaatactgtgtgacgccacttaggt-gaggcacctagagcagtgaaattcatagagacaaaccagacgaagtagagtggtggtt--------tccaggg--gctggcg--ggagaatgggcagtgagtgtttagtgggtgcggagtttcagtttgggaagat--------------gcagagcgttctggaggtg-----ggcggtggtgacggttacac s panTro4.chr1 224767184 473 + 228333871 AGCATGCAAGAGAAAAGCAGAACAGAGACAGTGTGGCTGGATTGATAGAATACCGGAAGGCCCaacagatagtcccacacccatgttcacagc-acatgagc----cacgattagccaaaaga--gggaagcaacaccagggtccatcaccgtataaatggataaatgagatgtggtctctacatacaatagaatgttgtttcagccgtaaaaaggaatgaaattcggacacacgctacagcctggatgaacctcaaagacacgatgctaaatcaaatcagcca--gtcacaaa-agcgcaaatactgtatgac-----ttaggt-gaggcacctagagcagccaaattcatagagacaaaccagacgaagtagagtggtggtt--------tccaggg--gctggtg--ggagaatgggcagtgagtgtttagtgggtgcggagtttcagtttgggaagat--------------gcagagcattctggaggtg-----ggcggtggtgatggttacac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226132657 478 - 229942017 AGCATGCAGGAGAAAGGCAGAACAGAGACAGTGTGGCTGGATTGATAGAATACTGGAAGGCCCaacagatattcccacacccatgttcacagc-acattagc----cacgattagccaaaaga--gggaagcaacaccaggctccatcaccgtatgaatggataaacaagatgtggtctatacatacaatagaatgttgtttcagccgtaaaaaggaatgaaattcggacacacgctacagcctggatgaaccttgaaaacatgatgctaaatcaaatcagcca--gtcacaaa-agcacaaatactgtatgactccacttagat-gaggtacctagagcagtcaaattcatagagacaaactagacgaagtagagtggtggtt--------tccaggg--gctggcg--ggagaatgggcagtgagtgtttagcgggtgcggagtttcagtttgggaagat--------------gcagagaattctggaggtg-----gacggtggtgatggttacac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140021597 478 - 143122389 AGCATGCAAGAGAAAAGCAGAACAGAGCCAGTGTGGCTGGATCGATAGAATACTGGAAGGCCCaacagatattcccacacccatgttcacggc-acattagc----cacgattagccaaaaga--gggaagcaacaccagggtccatcaccgtatgaatggataaacaagatgtggtctctacctacaacagaatgttgtttcagccgtaaaaacgagtgaaattcggacacacgctacagcctggatgaaccttgaagacatgatgctaaatcaaatcagcca--gtcacaaa-agcacaaatactgtatgactccacttagat-gaggtacctagagcagtcaaattcatagagacaaactagacgaagtagagtggtggtt--------tccaggg--gctggtg--ggagaatgggcagtgagtgtttagtgggtgtggagtttcagtttgggaagat--------------gccgagcgttctggaggtg-----gacagtggtgatggttacac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16738568 471 - 229590362 AGCGTGCAAGAGAAAAGCAGAACGGAGACACTGTGGCTGGACTG--AGAATACTGGAAGGCCCagcagatattcccacacccatgctcacagc-acattagc----caccattagccaaaaga--gggaagcaacaccagggtcc-tcaccgtatgaatgggtaaacaagatgtggtttgtacataaaatagaatgtcgtgtcagccttgaaaaggagtgaagtt----cacacgctacagcttggatgaaccttgaagacgtgacgccagatcaaatcagcca--gtcacaaa-agcgcaaatactgtatgactccacttacat-gaaggacctagagcagtcaaattcatagagacaagccagacaaagtagactggtggtt--------tccgagg--gctggag--ggaggatgggccgtgagtgtctagtgggtgcagattttcagtttgggaagat--------------acagaacgttctggaggtg-----gatggttgtgatggttacac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223501418 471 - 227556264 AGCGTGCAAGAGAAAAGCAGAACGGAGACACTGTGGCTGGACTG--AGAATACTGGAAGGCCCagcagatattcccacacccatgctcacagc-acattagc----caccattagccaaaaga--gggaagcaacaccagggtcc-tcaccgtatgaatgggtaaacaagatgtggtttgtacataaaatagaatgttgtgtcagccttgaaaaggagtgaagtt----cacacgctacagcctggatgaaccttgaagacgtgacgccagatcaaatcagcca--gtcacaaa-agcgcaaatactgtatgactccacttacat-gagggacctagagcagtcaaattcatagagacaagccagacaaagtagactggtggtt--------tccgagg--gctggag--ggaggatgggccgtgagtgtctagtgggtgcagattttcagtttgggaagat--------------acagaacgttctggaggtg-----gatggtggtgatggttacac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16551097 475 - 220367699 AGCGTGCAAGAGAAAAGCAGAACAGAGACACTGTGGCTGGACTG--AGAATACTGGAAGGCCCAACAGATATTCCCACACCCATGCTCACAGC-ACATTAGC----CACGATTAGCCAAAAGA--GGGAAGCAACACCAGGGTCC-TCACCGTATGAATGGGTAAACAAGATGTGGtctatacatacaatagaatgttGTGTCAGCCTTGAAAAGGAGTGAAGTTCAGACACACGCTACAGCCTGCATGAACCTTGAAGACGTGACGCCAGATCAAATCAGCCA--GTCACAAA-AGCacaaatactgtatgactccACTTACAT-GAGGGACCTAGAGcagtcagattcatagagacaaGCCAGACAAAGTAGACTGGgggtt--------tccaggg--gctggag--ggaggatgGGCCGTGAGTGTCTAGTGGGTGCAgattttcagtttgggaagat--------------acAGAACgttctggaggtg-----gatggtggtgatggttacac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82350083 454 + 85787240 --------------------------GACACTGTGGCTGGACTG--AGAATACTGGAAGGCCCaacagatattcccatagccatgctcacagc-acattagccacgcacgattagccaaaaga--gggaagcaacaccagggtccatcaccgtatgaatggggaaacaagatgtggtctatacatacaatagaatgttgtgtcagccttaaaaaggaatgaggttcagacacaccctacagcctggatgaaccttgaagacgtgatgccaaatcaaatcagcca--gtcacaaa-agcacgaatactgtatgactctacttactt-gaggtacctagagcagtcaaattcatagagacaagccagacaaagtagacgggtggtt--------tccaggg--gctggag--ggaggatgggccatgagtgttcagtgggtaaagattttcagtttgggaagat--------------gcagaatgttctggaggta-----gatagcggtgatggttacac i chlSab2.chr25 C 0 I 249 s calJac3.chr19 14020349 461 - 49578535 TGCATGCAAAAGAAGAGCAGAACA--GTCACTGTAGCTGGATTGATGGAACACTGGACAG-CCagcagaaagtcacacacccgtgtgcacagc-acattagc----cacga-gagccgaaagg--tagaaacagcaccagtgtccatcaccgtatgaatggatgaacaagatgt-gtctatacatacgatggaac-ccgtttcagctttaaaaaggaatgaaattcggacacacgctacagcctggatacatcttgaagac--gatgctaaatcaga-aagcca--gtcaccga-agcacagatgccatatgactccacttacat-gaggtagcgggagcagtcaagttcagag---caaactaggccaagtagaaagg-ggtt--------gctggggctgctg--g--ggaggatgggccgctcgtggcgaat-ggtgcggagcttcag-ctgggaagct--------------ggagagcgttctggaggtg-----ggtggtggcgatggctgc-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178651055 384 + 195471971 AGCACGCAGGTGAAAAGCAAGA-AGCAACACAATGCCTGAACTATTGTAGCACAGGAGCTCCCAACAGACACTGGCGACCCCTtgttcaaatc-ag----------cactgtttgtcaggcgaagaggaaacaac-caagtgtccatca-----------------------GAGGACTC------------------------ACCCAAGGAAGGCATGGAATCC---TACATGCCACAGC----ATGCAGTTCAAAGACATTGACCTGGGTATAATAACCCG--AACCCAGACAGTATGAACACAGTGGTCCTTCTCTCAGG--------------------GAGTTCTTTG---CTgac---acaaagtagcatggtggttattgtgagtcagggg--aagagaa--gagggaagagccat---tgtttaatgaatccaggggtcgagtttggga-----------------------------taaaggtg-----gatggcgttgacggatgtac i mm10.chr1 C 0 C 0 s canFam3.chr7 36225030 489 + 80974532 AGCAAGTAAGGTAAAAGCAGGGCACAGATAGCGGGGAGGACTTGGTATaaggctggaactaacaacagacacttgcacacccatgtttagagcaacattact----cactg-cggccaaaagg--cagacccaagcacatgtccgttgacagaatgaatggacaaacaaaatgtggtccatccacccagtaggatattactcagcttttgaaaaagaatgaa-ttctgacgcctgtgacaacaaggatgaatctggaaggcattatattaagtgaaataggcca--g--aaaaa-aaggcagatattatatgatacctctcatacagaggtacttagaggagtccagttgatagggacga--------aagcacaacggtgggc--------gcccagg--gctggaggaggtgggtggggagtgagactgtaatggaaacacagtttccgtctgggagaacgaccaagtttggggggggaggggcatggcggtggtggtgctgatggtgatggttgcac i canFam3.chr7 I 135 C 0 a score=135455.000000 s hg38.chr1_KI270759v1_alt 27844 46 + 425601 agtcatgtgaatgtacttaatgccatggaactgtacacttaaaaat- s panTro4.chr1 224767657 46 + 228333871 agtcatgtgaatgtacttaatgccatggaactgtacacttaaaaat- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133135 46 - 229942017 agttatgtgaatgtacttaatgccatggaactgtacacttaaaaat- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022075 46 - 143122389 tgtcatgtgaatgtactgaatgccatggaactgtacacttaaaaat- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739039 46 - 229590362 agtcatgtgaatgtgcttaatgccatggaactgtacacttaaaaat- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223501889 46 - 227556264 agtcatgtgaatgtgcttaatgccatggaactgtacacttaaaaat- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16551572 46 - 220367699 agtcatgtgaatgtgcttaatgccatggaactgtacacttaaaaat- i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14020810 46 - 49578535 agtagtgtgactgtatttaataccatggacctgtacacttaaaagt- i calJac3.chr19 C 0 I 137 s mm10.chr1 178651439 44 + 195471971 aacaacataaacatgcttaacaccactgaatgg--cagttgaaaat- i mm10.chr1 C 0 C 0 s canFam3.chr7 36225519 47 + 80974532 cgcagtgtgaatgtgcatgatgccatggaactggacacttaaaaaat i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82350537 249 + 85787240 I a score=93672.000000 s hg38.chr1_KI270759v1_alt 27890 53 + 425601 gattaaaatggtaaa-tttatgttacat---tttt--acacacaC--GTGTGTGTGCACAT s panTro4.chr1 224767703 53 + 228333871 gattaaaatggtaaa-tttatgttacat---tttt--acacacaC--GTGTGTGTGCACAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133181 54 - 229942017 gattaaaatggtaaactttatgttacat---tttt--acacacaC--GTGTGTGTGCACGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022121 56 - 143122389 gattaaaatggtaaactttatgttacat---ttttacacacaCAC--GTGTGTGTGCACGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739085 56 - 229590362 gattaaaagggtaaacttaatgttacat---tttt--aAACACACATGTGTGCATGCACAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223501935 56 - 227556264 gattaaaagggtaaacttaatgttacat---tttt--aAACACACATGTGTGCATGCACAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16551618 54 - 220367699 gattaaaagggTAAACtttatgttacat---tttt--aaacacac--gtgtgcatgcgGGC i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14020993 56 - 49578535 GATTAAAGTGGTAAATTTTATGTTACAT---TTTT--ATGTACACATGCATGCATGCACAC i calJac3.chr19 I 137 C 0 s mm10.chr1 178651483 47 + 195471971 gatcaaaatgtaaaactctgtgttttttatgtttt--aACGACCC--AGAT---------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36225566 53 + 80974532 ggttcaaatgctaaatgtgaaattgtgt---ctat--ttttctac--agttaaaagaaAA- i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82350537 249 + 85787240 I a score=193209.000000 s hg38.chr1_KI270759v1_alt 27943 58 + 425601 GCTTGTAACTCTCCATTTTTTATCTTTTGA--TCCTAACCTTGAACCTCTCCAGAGCCTT s panTro4.chr1 224767756 58 + 228333871 GCTTGTAACTCTCCATTTTTTATCTTTTGA--TCCTAACCTTGAACCTCTCCAGAGCCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133235 58 - 229942017 GCTTGTAACTCTCCATTTTTTATCTTTTGA--TCCTAACCTTGAACCTCTCCAGAGCCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022177 58 - 143122389 GCTTGTAACTCTCCATTTTTAATCTTTTGA--TCCTAACCTTGAACCTCTCCAGAGCCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739141 58 - 229590362 ATTTGTAACTCTCCATTTTTTATCTTTTGA--TCCTAACCTTGAACCTCTCCAGAGCCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223501991 58 - 227556264 ACTTGTAGCTCTCCATTTTTTATCTTTTGA--TCCTAACCTTGAACCTCTCCAGAGCCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16551672 58 - 220367699 ACTTGTAActctccattttttatcttttga--tcCTAACCTTGAACCTCTCCAGAGCCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82350786 58 + 85787240 GCTTGTAACTCTCCATTTTTTATCTTTTGA--TCCTAACCTTGAACCTCTCCAGAGCCTT i chlSab2.chr25 I 249 C 0 s calJac3.chr19 14021049 45 - 49578535 ACTTGTAACTCTCCATTTTCTATCTTTTGA--TCCTAACCTTTAACC------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178651530 52 + 195471971 GGTTGGGACTCCCTATAGTTTGCCAT--------CTAACATCTAACTAATCCAGATCTTT i mm10.chr1 C 0 C 0 s canFam3.chr7 36225619 58 + 80974532 TATCGAAACCCT--ATTTTCTGTTTTTTAAGTCCTTAGCTTTTAACCTCTCCAGATCTTT i canFam3.chr7 C 0 C 0 a score=38883.000000 s hg38.chr1_KI270759v1_alt 28001 18 + 425601 AACT-------TAAATATCTCCTCA s panTro4.chr1 224767814 18 + 228333871 AACT-------TAAATATCTCCTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133293 18 - 229942017 AACT-------TAAATATCTCCTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022235 18 - 143122389 AACT-------TAAATATCTCCTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739199 18 - 229590362 AACT-------TCAATATCTCCTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223502049 18 - 227556264 AACT-------TCAATATCTCCTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16551730 18 - 220367699 AACT-------TAAATATCTcctca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82350844 18 + 85787240 AACT-------TAAATATCTCCTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14021094 8 - 49578535 -----------------TCTCCTCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178651582 21 + 195471971 TATTACCCCTATAAATATATA---- i mm10.chr1 C 0 C 0 e canFam3.chr7 36225677 0 + 80974532 C a score=532520.000000 s hg38.chr1_KI270759v1_alt 28019 179 + 425601 ggccgggtgtggtggctcatacctgtaatcccagcacttcgggaggccgatgccagcggatcacttggggtcaggagtttgagaccagcctggccaacatgctgaaaccccatctctact-aaaaatac----aaaaattagccaggcatggtggtgggcgcctgtaatgccagctactcggga s panTro4.chr1 224767832 179 + 228333871 ggccgggtgtggtggctcatacctgtaatcccagcactttgggaggccgatgccagcggatcacttggggtcaggagtttgagaccagcctggccaacatgctgaaaccccatctctact-aaaaatac----aaaaattagccaggcatggtggtgggcgcctgtaatgccagctactcggga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133311 179 - 229942017 ggccgggtgtggtggctcatacctgtaatcccagcactttgggaggctgaggcaggtggatcacttggggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctact-aaaaatac----aaaaattagccaggcgtggtcgtgggcgcctgtaatgccagctactcggga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022253 184 - 143122389 ggccgggtgtggtggctcatacctgtaatcccagcactttgggaggccgaggcaggcggatcacttggggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaaatacaaaaaaaaattagccaggtgtggtggcgggcacctgtagtcccagctacttggga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739217 179 - 229590362 ggccgggtgtggtggctcatacgggtaatcccagcactttgggaggccgaggcgggcagatcacttcgggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctact-aaacatac----aaaaattagccaggcgtggtggtgggtgcctgtaatcccagctactcagga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223502067 179 - 227556264 ggccgggtgtggtggctcatacgggtaatcccagcactttgggaggccgaggcgggcagatcacttcgggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctact-aaaaatac----aaaaattagccaggcgtggtggtgggtgcctgtaatcccagctactcagga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16551748 179 - 220367699 ggccgggtgtggtggctcatacgggtaatcccagcactttgggaggccgaggtgggcagatcacttggggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctact-aaaaatac----aaaaattagccaggcgtggtggtgggtgcctgtaatcccagctactcagga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82350862 179 + 85787240 ggccgggtgtggtggctcatacgggtaatcccagcactttgggaggccaaggcgggcggatcacttggggtcaggagttcgagaccagcctggccaacatggtgaaaccccatctctact-aaaaatac----aaaagttagccaggcatggtggtgggtgcctgtaatcccagctactcagga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14021102 179 - 49578535 ggctgggtatggtggctcgtacctgtaatcccagagctttgggaagctgaggcaggcaggtcccttgggctcaggagttcaagaccagactggccaacatggtgaaaccctgtctctact-aaaaatac----acaaattagccaggcttggtggtgcacacctgtaatcccagctactcagga i calJac3.chr19 C 0 C 0 e mm10.chr1 178651603 0 + 195471971 C e canFam3.chr7 36225677 0 + 80974532 C a score=34812.000000 s hg38.chr1_KI270759v1_alt 28198 10 + 425601 ggctgaggca s panTro4.chr1 224768011 10 + 228333871 ggctgaggca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133490 10 - 229942017 ggctgaggca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022437 10 - 143122389 ggctgaggca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739396 10 - 229590362 ggctgaggca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223502246 10 - 227556264 ggctgaggca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16551927 10 - 220367699 ggctgaggca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82351041 10 + 85787240 ggctgaggca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14021281 9 - 49578535 gg-ggaggca i calJac3.chr19 C 0 C 0 s canFam3.chr7 36225677 10 + 80974532 GGCTGAAGTA i canFam3.chr7 C 0 C 0 e mm10.chr1 178651603 0 + 195471971 C a score=236939.000000 s hg38.chr1_KI270759v1_alt 28208 107 + 425601 cgagaattgcttgaactt-gggaggcggaggttgcagtgagctgagatccgcaccactgcactccagc--ctgggcgacggagtgagactccgtgtc-----------aaaaaaaaaaaaa s panTro4.chr1 224768021 106 + 228333871 cgagaattgcttgaactt-gggaggcggaggttgcagtgagctgagatccgcactactgcactccagc--ctgggcgacggagtgagactccgtgtc-----------aaaaaaaaaaaa- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133500 96 - 229942017 tgagaattgcttgcactt-ggaaggcggaggttgcagtgagctgagatccgcgccactacactccagc--ctgggcgacg-----------tgtgtc-----------aaaaaaaaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022447 108 - 143122389 ggagaatggcaggaacct-ggggggcggagcttgcagtgagccaagat-cgcgccactgcactccagccactctccaacagagagagactccgtctc-----------aaaaaaaaaaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739406 107 - 229590362 cgagaatcgcttgaactcgggggggcgaaggttgcagtgagccgagatccgcatcactgcactctagc--ct-ggcgatggagcgagactccgtgtc-----------aaaaaaaaaaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223502256 107 - 227556264 cgagaatcgcttgaactcaggggggcgaaggttgcagtgagccgacatccgcatcactgcactctagc--ct-ggcgatggagcgagactccgtgtc-----------aaaaaaaaaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16551937 107 - 220367699 cgagaatcgcttgaactcgggggggcgaaggttgcagtgagccgagatccgcatcactgcactccagc--ct-ggcgatggagcgagactccgtgtc-----------aaaaaaaaaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82351051 117 + 85787240 cgagaattgcttgaactt-ggggggtgaaggttgcagtaagccaagatccgcgtcactgcactctagc--ct-ggtgatggagcgagactctgtgtccaaaaaaaaaagaaaaaaaaaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14021290 104 - 49578535 ggagcatcgcttgaacct-cgggagcggaggttgccgtgagctgagatccgcgccattgcactccagc--ctgggcaac--agtgagactctgcctc-----------aaaaaaaaaCAG- i calJac3.chr19 C 0 C 0 e mm10.chr1 178651603 0 + 195471971 C e canFam3.chr7 36225687 0 + 80974532 C a score=77282.000000 s hg38.chr1_KI270759v1_alt 28315 35 + 425601 TCTCCTCTACGAGTGGATGT-CGGGTGAGGTGGGCT s panTro4.chr1 224768127 35 + 228333871 TCTCCTCTATGAGTGGATGT-CGGGTGAGGTGGGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133596 35 - 229942017 CCTCCTCTGTGAGTGGGTGT-CGGGTGAGGTGGGCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022555 32 - 143122389 T---CTCTGTGAgtgggtgt-cgggtgaggtgggct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739513 33 - 229590362 TCTCCTCT--GAGTGGGTGT-CGGGCGAAGTGGGCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223502363 32 - 227556264 -aTCTCCT--GAGTGGGTGT-CGGGCGAAGTGGGCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16552044 33 - 220367699 tctcctct--gAGTGGGTGT-CGGGCGAGGTGGGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82351168 33 + 85787240 TCTCCTCT--TAGTGGGTGT-CAGGTGAGGTGGGCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14021394 32 - 49578535 ---TCTCTGTGAGTGGGTGT-CAGGTGAGCTGGGCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36225687 25 + 80974532 TCCCCCACATGAGTGTGTGTGCAGG----------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178651603 0 + 195471971 C a score=342070.000000 s hg38.chr1_KI270759v1_alt 28350 94 + 425601 GGGGTGGGCGATTTATTTGGGGCTTAGAAGGAAGCAGAA-----AAGTTCAGTCATCTTCTGTTACCCATACAGCAAGGTACAAGAAACAATGTGTGTG s panTro4.chr1 224768162 94 + 228333871 GGGGTGGGCGATTTATTTGGGGCTTAGAAGGAAGCAGAA-----AAATTCAGTCATCTCCTGTTACCCATACAGCAAGGTACAAGAAACAATGTGTGTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133631 94 - 229942017 GGGGTGGGCAATTTATTTGGGGCTTAGAAGGAAGCAGAA-----AAGTTCAGTCATCTCCTGCTACCTGTACAGCAAGGTACAAGAAACAATGTGTGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022587 94 - 143122389 ggggtgggCAATTTATTTGGGGCTTAGAAGGAAGCAGAA-----AAGTTCAGTCATCTCCTGTTACCCGTACAGCGAGGTTCAAGAAACAATGTGTGTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739546 94 - 229590362 GGGGCGGGCAGTTTATTTGGGGTGTAGAAGGAAGCAGAA-----AAGGTTGGTCATCTCCTGTTACCCGTACAGCAAGGGACAAGAAGCAATGTGTGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223502395 94 - 227556264 GGGGCGGGCAGTTTATTTGGGGCATAGAAGGAAGCAGAA-----AAGGTTGGTCATCTCCTGTTACCCGTACAGCAAGGGACAAGAAGCAATGTGTGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16552077 94 - 220367699 GGGGCGGGCAGTTTATTTGGGGCGTAGAAGGAAGCAGAA-----AAGGTTAGTCATCTCCTGTTACCCGTACAGCAAGGGACAAgaagcagtgtgtgtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82351201 94 + 85787240 GGGGCGGGCAGTTTATTTGGGGCTTAGAAGGAAGCAGAA-----AAGGTTAGTCATCTCCTGTTACCCGCACAGCAAGGTACAAGAAGCAGTGTGTGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14021426 91 - 49578535 GGGGTGGGCAGTTTATCTGGGGCTTAGAAGGAAGCAGGA-----CA--TCAGT-GTCTCCTGTCACCCATACAGCAAGGTGCAGGGAGCAGCATGTGTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178651603 91 + 195471971 GGGGTGAGGGGCTTATTTAGGACTTATTAGGGAGTAGAA-----AAGTGCAGAGGTCTTCTGTTACCCGt--agtaaggcaca-gaaatcgtgtgtgtg i mm10.chr1 C 0 I 208 s canFam3.chr7 36225712 99 + 80974532 GGGGTGGGGACTTTATCTGGGGCTTGGGAGGCAGCAGGAGGGGGAAGTTTGGTGGCCTCCTGTTACCCCTACACTAAGGTTTAGGAAATAGTTTGTGGG i canFam3.chr7 C 0 C 0 a score=48676.000000 s hg38.chr1_KI270759v1_alt 28444 24 + 425601 GGAGCAGCAATGGCCTCTCTCTCT s panTro4.chr1 224768256 24 + 228333871 GGAGCAGCAATGGCCTCTCTCTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133725 24 - 229942017 CGAGCAGCAATGGCCTCTCTCTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022681 22 - 143122389 TGAGC-GCAATGGCCTCTGTCT-G i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739640 24 - 229590362 TGAGCAGCAATGGCCTGTCTGTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223502489 24 - 227556264 TGAGCAGCAATGGCCTGTCTGTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16552171 24 - 220367699 tgagcagcAATGGCctgtctgtgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82351295 24 + 85787240 TGAGCAGCAATGGCCTGTCTCTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14021517 20 - 49578535 TGAACAGCAATGGCC----TCTGT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36225811 18 + 80974532 -----GGAGTTGGCCTCTCT-TGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178651694 208 + 195471971 I a score=1984232.000000 s hg38.chr1_KI270759v1_alt 28468 549 + 425601 TTTTATTTTTCAGAGGAAGTGGTGGTAATTCCTTTTA---GTGTCTTGCATTCTAC--AT-GCAGCTTTAAAATCTACACTGACATGTTTCAAGCAAT-CTCATAGGTGGCTACTAACTTAATTTGTGTTTTGCTCATTCCTAATGCGCAGGAATGTTATGAAAATGTTCGTTCCTGGTGTTAACTAACTCTGTTCAGTCCTTGTATCCTGGTTGATTAATGGCAAGGTAATTGCCCTTCATTTCTTTGCCTTCAAAGCAGTGCCACCTAGGTCTTTACTGCCCTCAAAACAGATGTCTTCTGCAAAGAGTGAAATTCCGATCAG-TCAGTCCCTCCTCAT---AAAACATGTAGGTGAGAGGCCACTTGGATGCACAGGAAGGTTG-CAAAGCCAGCTGCCCTGCAGGAGCCTTCAGAAGAGTGACCT-------------------------CCATCTGGGGTCAGACCCCGGCTCCCTGGAGGGTCAGCAGAGGAGAAGGGGCATCTTCTGGAGAGGAGTATGGGTGCGGGGCAGACAAAGGAACAGAAACAGAAACAATCAAGAATGAGG-AGTGAGCCTGCA s panTro4.chr1 224768280 548 + 228333871 TTTTATTTTTCAGAGGAAGTGGTGGTAATTCCTTTTA---GCGTCTTGCATTCTAC--AT-GCAGCTTTAAAATCTACACTGACATGTTTCAAGCAAT-CTCATAGGTGCCTACTAACTTAATTTGTGTTTTGCTCATTCCTAATGCGCAGGAATGTTATGAAAATGTTCGTTCCTGGTGTTAACTAACTCTGTTCAGTCCTTGTATCC-GGTTGATTAATGGCAAGGTAATTGCCCTTCATTTCTTTGCCTTCAAAGCAGTGCCACCTAGGTCTGTACTGCCCTCAAAACAGATGTCTTCTGCAAAGAGTGAAATTCCGATCAG-TCAGTCCCTCCTCAT---AAAACACGTAGGTGAGAGGCCATTTGGATGCACAGGAAGGTTG-CAAAGCCAGCTGCCCTGCAGGAGCCTTCAGAAGAGTGACCT-------------------------CCATCTGGGGTCAGACCTGGGCTCCCTGGAGGGTCAGCAGAGGAGAAGGGGCATCTTCTGGAGAGGAATATGGGTGCGGGGCAGACAAAGGAACAGAAACAGAAACAATCAAGAATGAGG-AGTGAGCCTGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226133749 543 - 229942017 TTTTATTTTTCAGAGGAAGTGGCGGTAATTCCCTTTA---CCATCTTGTATTCTAC--AT-GCAGCTTTAAAATCTACACTGACATGTTTCAAGCAAT-CTCATAGGTGCCTACTAACTTAATTTGTGTTTTGCTCATTCCTAATGTGCAGGAATGTTATTAAAATGTTCGTTCCTGGTGTTAACTAACTCTTTTCAGTCCTTGTATCCTGGTTGATTAATGGCAAGGTAATTGCCCTTCATTTCTTTGCCTTCAAAGCAGTGCCACCTGGGTCTTTACTGCCCTCAAAACAGATGTCTTCTGCAAAGAGTGAAATTCCGATCAA-TCAGTCCCTCCTCAT---AAAACATGTAGGTGAGAGGCCACTTGGGTGCACAGGAAGGATG-CAAAGCCAGCTGCCCTGCAGGAGCCTTCAGAAGAGCGCCCT-------------------------CCGTCTGGGGTCAGACCCGGGCTCCCTGGAGGGTCAGTAGAGGAGAAGGGGCATCTTCTGGAGAGGAATATGGGTGCGGGGCAGACAAAGG------AACAGAAACAATCAAGAATGAGG-AGTGAGCCTGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140022703 539 - 143122389 TTTTATTTTTCAGAGGAAGTGGTGGTAATTCCCTTTA---GCATCTTGCATTCTAC--AT-GCAGCTTTGAAATCCACACTGACATGTTTCAAGCAAT-CTCATAGGTGCCTACTAACTTAATTTGTGTTTTGCTCATTCCTGATGTGCAGGAATGTTATTAAAATGTTCATTCCTGGTGTTAACTAACTCTGTTCCGTCCTTGTATCCTGGCTGATTAATGGCAAGGTAATTGCCTTTCCTTTCTTTGCCTTCAAAGCAATGCCACCTGGGTCTTTACTGCCCTCAAAACAGATGTCTTCTGCAAAGAGTGAAATTCCGATCAG-TCAGTCCCTCCTCAT---AAAACATGTAGGTGAGAGGCCACTTGGGTGCACAGGAAGGATG-CAAAGCCAGCTGCCCCGCAGGAGCCTTCAGAAGAGTGACCT-------------------------CCGTCTGGGGTCAGACCCGGGCTTGCTGGAGGGTCAGCAGAGGAGAAGGGGCATCTTCTGGAGAGGAATATGGGTGAGGGGCAGACAAAGG------AACAGAAACAATCAAGAGTGAG-----GAGCCTGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16739664 535 - 229590362 TTTTATTTTTCAGAGGAAGTGGTGGTAACTCCCTTTA---GCATCTTGCATTCTAC--AT-TCAGCTTTAAAATCCACACTGACGTGTTTCAAGCAAT-CTCATAGGTGCCTACTAACTTAATTTGTGTTTTGCTCATTCCTAATGCCCGGGAATGTTATTAAAATGTTCATTCCTGGTGTTAACTAACTCTGTTCAGTCCTTGTATCCTGGTTGATTAATGGCAAGGTAATTGCCCTTCATTTCTTTGCCTTCAAAACAGTGCCACCTGGGTCTTTACTGCCCTCAAAACACATGTCTTCTGCAAAGAGTGAAATTCCGATCGG-CCAGTCCCTCCTCAT---AAAACATGCAGGTGAGAGGCCGCTCGGGTGCACGGGAAGGATG-CAAAGCCAGCTGCCCTGCAGGAGCCTTCAGAAGAGTGACCT-------------------------CCATCTGGGGCCAGACCCAGGCTCCCCGGAGG-------GAGGAGAA-GGGCTTCTTCTGCAGAGGAATATGGGTGCGGGGCAGACAGAGG------AACAGAAACAATCAAGAATGAGG-AGTGAGCCTGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223502513 535 - 227556264 TTTTATTTTTCAGAGGAAGTGGTGGTAACTCCCTTTA---GCATCTTGCATTCTAC--AT-TCAGCTTTAAAATCCACACTGACATGTTTCAAGCAAT-CTCATAGGTGCCTACTAACTTAATTTGTGTTTTGCTCATTCCTAATGCCCGGGAATGTTATTAAAATGTTCATTCCTGGTGTTAACTAACTCTGTTCAGTCCTTGTATCCTGGTTGATTAATGGCAAGGTAATTGCCCTTCATTTCTTTGCCTTCAAAACAGTGCCACCTGGGTCTTTACTGCCCTCAAAACACATGTCTTCTGCAAAGAGTGAAATTCCGATCGG-CCAGTCCCTCCTCAT---AAAACATGCAGGTGAGAGGCCGCTCGGGTGCACGGGAAGGATG-CAAAGCCAGCTGCCCTGCAGGAGCCTTCAGAAGAGTGACCT-------------------------CCATCTGGGGCCGGACCCAGGCTCCCTGGAGG-------GAGGAGAA-GGGCATCTTCTGCAGAGGAATATGGGTGCGGGGCAGACAGAGG------AACAGAAACAATCAAGAATGAGG-AGTGAGCCTGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16552195 541 - 220367699 ttttatttttcagaggaaGTGGTGGTAACTCCCTTTA---GCATCTTGCATTCTAC--AT-TCAGCTTTAAAATCCACACTGACATGTTTCAAGCAAT-CTCATAGGTGCCTACTAACttaatttgtgttttgttcattCCTAATGCCCAGGaatgttattaaaatgttcattccTGGTGTTAACGAACTCTGTTCAGTCCTTGTATCCTGGTTGATTAATGGCAAGGTAATTGCCCTTCATTTCTTTGCCTTCAAAACAGCGCCACCTGGGTCTTTACTGCCCTCAAACCAGATGTCTTCTGC--AGAGTGAAATTCCGATCGG-TCAGTCCCTCCTCAT---AAAACACGTAGGTGAGAGGCCGCTCGGGTGCACAGGCAGGATG-CAAAGCCAGCTGCCCTGCAGGAGCCTTCAGAAGAGTGACCT-------------------------CCATCTGGGGTCAGACCCAGGCTCCCTGGAGGCTCAGCAGAGGAGAAGGGGCATCTTCTGCAGAGGAATATGGGTGCGGGGCAGACAAAGG------AACAGAAACAATCAAGCATGAGG-AGGGAGCCTGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82351319 541 + 85787240 TTTGATTTTTCAGAGGAAGTGGTGGTGACTCCCTTTA---GCATCTTGCATTCTAC--AC-TCAGCTTTAAAATCCACACTGACATGTTTCAAGCAAT-CTCATAGTTGCCTACTAACTTAATTTGTGTTTTGCTCATTCCCAATGCCCAGGAATGTTATTAAAATGCTCGTTCCTGGTGTTAACTAA--CTGTTCAGTCCTTGTATCCTGGTTGATTAATGGCAAGGTAATTGCCCTTCATTTCTCTGCCTTCAAAACAGTGCCACCTGGGTCTTTACTGCCCTCAAAACAGATGTCTTCTGCAAAGAGTGAAATTCCGATCAG-TCAGTCCCTCCTCAT---AAAACATGTAGGTGAGAGGCCACTCGGGTGCACAGGAAGGATG-CAAAGCCAGCTGCCCTGCAGGAGCCTTCAGAAGAGTGACCT-------------------------CCATCTGGGGTCAGACCCAGGCTCCCTGGAGGGTCAGCAGAGGAGAAGGGGCATCTTCTGCAGAGGAGTATGGGTGCGGGGCAGACAAAGG------AACAGAAACAATCAAGAATGAGG-AGTGAGCCTGCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14021537 528 - 49578535 TTGCGGTTTTCAGAGGAAATGGTGGTAACTCCCGTCA---GCATCCTGCATTCTAC--CT-GCAGCTTTAAAATCCGCTCT-CTGTGTTTCAAGCCAT-CTCACAGGTGCCTACTAACCTAATTTGTG-TTCGCTCATTCCTAACACCCAGGAATGTTGTTACAATGTTACTGCCTGGTGTGAACTGCCTCTGAGTAGTCCTTGTATCCTGGCTGATTAATGGCGAGGTAATTGCCCCTCATTTCTTTGCCTTCAGAGCAGTGCCACCTGGGTCTTTACTGCCCTCAAAACAGATGTCTTCTGCAAAGAGTGAAATTCCGATCAG-TCCGTCCCTCCTCAT---AAAACATGGAGGTGAGAAG-------------CAGGAAGGGCG-GAGAGCAGGTGGCCCTGCAGGGGCCTTCAGAAGAGTGACCT-------------------------CCGTCTGGGGTCAGGCCCCGGCTCCCTGGAGGGTCAGCAGAGGGGAAGGGGCCTCTCCTGGAGAGGAATATGGACGCGGGGCAGACAAAGG------AACAGACACCGCCAAGAATGAGG-AGTGAGTCTGCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178651902 527 + 195471971 TTTTCCTTTGCAGAGGGAGTGGAGCGAACTCCACAGA---GCATCTTGTACTCTGTCAAA-GCAGTTCTCACATCCACA--GACGTGTCCCCAGCCATCCTCAC----TCTCACTGATTCAACTTGTGCTTTGCTCACTCCTCAGACCCAGGAAGGCTCTTA-GCTGTTATTCCCTGGTG-GAACGGAGGCTGTTCAGTCCTTGTATCCTGGCTGATTAGTGGCAGGGTAACTGCCCTTCATTTCTTTGTCTTCAAAACATTGCCACCTGGGTCTTTACTGCCCTCAGAGCAGATGTCTTGTGC--AGAGTCAAATTCCT-CCAG-TTAGTCCTTCTGTGTGCAATAACATGGAGGTGAGAAGCC-TTAGGGTGCACAGAAAGG------------GCAGCCTTGCAGGCATCTGCCCAACAGTGGCTT-------------------------CCATATGCAGTTAGGCCTGGGATCTCTGAGGGAATGGTGCACAGCAAGGACCATGTTCCAGAAAGGACTATGGATGCCAGGCAAGTACAGG------GCCAGAAAATAGGGAGAAAGGGGTAATGGGCTTACA i mm10.chr1 I 208 I 586 s canFam3.chr7 36225829 546 + 80974532 TTTTATTTTGCAGAGACAGTGGTAGCGGCTTCCTTTAACTGTGTTTTGAATTCTAC--ATGGCAGCTTTGGAACCTGCATCAACATATTTTGAGCAAT-CCTGTGGTTGCCTACTAACTGAATTTGTATTTCACTCACTGCCAGTGCTGAGGAACGTTATTAAAATGTTCTTTCCTGGTCTTGACTAACACCATTCGGCCCTTGTAGCCTGGTTGATTAATGGCAGGGAAATTGCCCTTCATTTCTTTGCCTTGAAAACCGTGCCACCTGGGTCTTTACTGCCCTCAGAGCAGATGTCTTCTGCAAAGAACGGAATTTCTACCAGTTCGGCCCCTCCTCCT---CTCACACATGGGTGAGAAACCAGTGGGGTGCACAGGACAGATGCCAAAGCTCTCAGCCCCGCGGGAGTCTTCAGAAGAGTGACCCCAGGCCTCTCCCAGGCTAATTATCACCATCCGGGCTAGGGCTAGTGCTCCCTGGAGGAGCAGCAGAGGAGTAGGATCGTCTTCCGG------------------------CAAAGA------AACGGAATCAACCCCCAA----G-CATGAGTTTGCA i canFam3.chr7 C 0 C 0 a score=86774.000000 s hg38.chr1_KI270759v1_alt 29017 30 + 425601 GTGCACCTTAGAGTGTGTGTCTATTTTCTG--------- s panTro4.chr1 224768828 30 + 228333871 GTGCACCTTAGAGTGTGTGTCTATTTTCTG--------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226134292 30 - 229942017 GTGCACCTTAGAGTGTGTGTCTGTTTTCTG--------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140023242 30 - 143122389 GTGCACCTTAGAGTGTGGGTCTGTTTCCTG--------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16740199 30 - 229590362 GTGCAACTTAGAGTGTGTGTCTGTTTTCTG--------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503048 30 - 227556264 GTGCAACTTAGAGTGTGTGTCTGTTTTCTG--------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16552736 30 - 220367699 GTGCAACTCAGAGTGTGTGTCTGTTTTCTG--------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82351860 30 + 85787240 GTGCACCTTAGAGTGTGTGTCTGTTTTCTG--------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14022065 30 - 49578535 GGACGGCTTAGGGTGTATGTCTGTCTTCTA--------- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36226375 39 + 80974532 ATACAGTTTGTAGTGTGTGGCCATCATCAGCATGTTCCC i canFam3.chr7 C 0 C 0 e mm10.chr1 178652429 586 + 195471971 I a score=686403.000000 s hg38.chr1_KI270759v1_alt 29047 209 + 425601 --CCAAGGGTGAGATGTTCtgagcattttctctatgtctacctccgtcaagtactttccataactgctgtcatgtcagcctcctactaaccctgtacagtaggtatgactgccgttccattttcatagatgagaccgaagggt-aaagagggtagata----actggaccgagtctacacatgtattaggtgtcggagttgggatttgaacccagg s panTro4.chr1 224768858 209 + 228333871 --CCAAGGGTGAGATGTTttgagcattttctctgtgtctacctccgtcaagtactttccataattgctctcatgtcagcctcctactaaccctgtacagtaggtatgactgccgttccattttcatagatgagaccgaagggt-aaagagggtagata----actggaccgagtctacacatgtattaggtgtcggagttgggatttgaacccagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226134322 209 - 229942017 --CTAAGGGTGAGATGTTttgagcattttctctgtgtctgcctccatcaagtactttccataattgctctcatgtcagcctcctactaaccctgtacagtaggtatgactgccgttccattttcatagatgagaccgaaaggt-aaagagggtagata----actggaccgagtctacacatgtattaggtgtcggagttgggatttgaacccagg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140023272 209 - 143122389 --CTAAGGGTGAGatgttttgagcattttctctgtgtctacctccgtcaagcactttccgtaattgctctcacgtcagccgcctactaaccctgtacagtaggtatgactgctgttccattctcgtagatgagaccgaagggt-gaagagggtagtta----actggaccgagtctacacatgtattaggtgtcggagttgggatttgaacccggg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16740229 209 - 229590362 --CTGAGGGTGAGATGTTTCCAACATTTtttctgtgtctacgtctgtcaagtactttccataattgctctcatgtcagcctcctactaaccctatacagtaggtatgactgccgttccgttttcatagatgagaccaaagggt-aaagagggtagata----actggaccgagtctacacatgtattaggtgttggagttgggatttgaacccagg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503078 209 - 227556264 --CTAAGGGTGAGATGTTTCCAACATTTtttctgtgtctacgtctgtcaagtactttccataattgctctcatgtcagcctcctactaaccctatacagtaggtatgactgccgttccgttttcatagatgagaccaaagggt-agagagggtagata----actggaccgagtctacacatgtattaggtgttggagttgggatttgaacccagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16552766 209 - 220367699 --CTAAGAGTGAGAtgtttccaacattttttttgtGTCTACGTCTGTCAAGTACTTTCCATAATTGCTCTCATGTCAGCCTCCTACTAACCCTATACAGTAGGTATGACTGCCGTTCCGTTTTCATAGATGAGACCAAAGGGT-AAAGAGGGTAGATA----ACTGGACCGAGTCTACACATGTATTAGGTATTGGAGTTGGGATGTGAACCCAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82351890 209 + 85787240 --CTAAGGGTGAGatgtttcaaacattttttctgtgtctacctctgtcaagtactttccataattgctctcatgtcagcctcctactaaccctatacagtaggtatgactgcctttccgttttcatagatgagaccaaagggt-aaagagggtagata----actggaccgagtctacatatgtattaggtgttggagttgggatttgaacccagg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14022095 208 - 49578535 --CTAACGGTGACACAGTttgagcattttctctgtgtctccctccaccgagtattttccgcgactgctctcatgtcagcctgctactaa-cctgtacagtaggtattactgccagtccgttttcatagatgaggccccagggt-aaagagggtagcta----actggaccaagtctacacctgtattaggtgttagagttgggatctgaactcaga i calJac3.chr19 C 0 C 0 s mm10.chr1 178653015 155 + 195471971 --CTAAAGGCAATGTTTTCTGAGCATCTGCTGTGAGTCTGGCTTTGCCAAG-----------------------------------TCacactgcaaagatgatgttgccaccatcccatttgtgtagatgag---gaaggctcaaagatgctaactgagccactggac--------cacat-tcctgggtgatgaagctgg------------gg i mm10.chr1 I 586 C 0 s canFam3.chr7 36226414 204 + 80974532 CTCTGACAGAGATGt-ttttgaacatttgctacgtctctgcctctgccaagcactttccagaatcatcctcaggtcagacacatagtaagccttagaggtaggcattcctggc-ttttatttttataaatagg----aaaagc-aatgaggggagata----actggagcaaggtgatacctgtatc-ggcctcagagctaggatctgaacccaaa i canFam3.chr7 C 0 I 169 a score=1226941.000000 s hg38.chr1_KI270759v1_alt 29256 386 + 425601 tctcatga-------------------------------------------------ccttaaGTTGGGCGAGAACTGGATGTAATCTGGAGTGGCCAGCATGTTCCGCTGGGGCTGTGATTTCAGTTATCTGT-----AAGAAAGCATGAGGCAGCTAAAACCACTGAGGCCCAGCACCAGTGCAGCATCTCTGATTTCCTTTTGCCCTGCTTGTGTCTGGGGACTTCAGACTGTCTGTCTGCTCTCTGGATTCTGTGGTCCAACTGGCACTTCTGTGCTAAAAATGAA--------GGCATAATTGAGGCATCACGGACCCCAGATGGGC--CCTGCAGCCTGGGGCAAGGCTCAGCTGACCTCA-TGGCACCCGTCT-------CAGTCTAATCCAGTCTTGGATTG----CCACTTCCCCTTTTT----------GGCTTTGCCTTGTCCTCCCCTGGCCTGGCATCC s panTro4.chr1 224769067 386 + 228333871 tctcatga-------------------------------------------------ccttaaGTTGGGCGAGAACTGGATGTAATCTGGAGTGGCCAGCATGTTCCGCTGGGGCTGTGATTTCAGTTATCCGT-----AAGAAAGCAGGAGGCAGCTAAAACCACTGAGGCCCAGCACCAGTGCAGCATCTCTGATTTCCTTTTGCCCTGCTTGTGTCTGGGGACTTCAGACTGTCTGTCTGCTCTCTGGATTCTGCGGTCCAACTGGCACTTCTGTGCTAAAAATGAA--------GGCATAATTGAGGCATCACGGACCCCAGATGGGC--CCTGCAGCCTGGGGCAAGGCTCAGCTGACCTCA-TGGCACCCGTCT-------CAGTCTAATCCAGTCTTGGATTG----CCTCTTCCCCTTTTT----------GGCTTTGCCTTGTCCTCCCCTGGCCTGGCATCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226134531 386 - 229942017 tctcatga-------------------------------------------------ccttaaGTCGGGCGAGTACTGGATGTAATCTGGAGTGGCCAGCATGTTCCGCTGGGGCTGTGATTTCAGTTATCCGT-----AAGAAAGCAGGAGGCAGCTAAAACCACTGAGGCCCAGCGCCAGTGCAGCATCTCTGATTTCCTTTTGTCCTGCTTGTGTCTGGGGACTTCAGACTGTCTGTTTGCTCTCTGGATTCTGCGGTCCAACTGGCACTTCTGTGCTAAAAATGAA--------GGCATAATTGAGGCATCACAGACCCCAGATTGGC--CCTGCAGCCTGGGGCAAGGCTCAGCTGACCTCA-TGGCACCCCTCT-------CAGTCTAATCCAATCTTGGATTG----CCACTTCCCCGTTTT----------GGCTTTGCCTCGTCCTCCCCTGGCCTGGCATCC i ponAbe2.chr1 C 0 I 156 s nomLeu3.chr5 140023481 386 - 143122389 tctcatga-------------------------------------------------ccttaaGTCGGGTGAGAACTGGATGTAATCTGGAGTGGCCAGCGTGATCTGCTGGGGCTGTGATTTCAGTTATCTGT-----AAGGAAGCAGGAGGCAGCTAAAACCACTGAGGCCCAGCGCCAGTGCAGCATCTCTCATTTCCTTCTGCCCTGCTTGTGTCTGGGGACTTCAGACTGTCTGTCTGCTCTCTGGATTCTGCGGTCCAACTGGCACTTCTGTGCTAAAAATGAA--------GGCATAATTAAGGCATCACAGACCCCAGATTGGC--CCTGCAGCCTGGGGCAAGGCTCAGCTGACCTCA-TGGCACCCCTCT-------CAGTCTAATCCAGTCTTGGATTG----CCACTTCCCCTTTTT----------GGCTTTGCCTCGTCCTCCCCTGGCCTGGCATCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16740438 385 - 229590362 tctcatga-------------------------------------------------ccttaaGTCGGGTGAGAACTGGATGTAATCTGGAGTGGCCAGCGTGTTCCTCTGGGGCTGTGATTTCAGTTACTCCT-----AAGAAAGCAGGAGGCAGCTACAGTCACTTAGGCCCAGCGCCAGTGCAGCGTCTCTGAATTCCTTTTGCCCTGCGTGCGTCTGGGGACTTCAGACTGTCCATCTGCTCTCCGGATTCTACGGTCCAACTGGCACTTCTGTGCTAAAAATGAA--------GGCATCATTGAGGCATTGCAGACCGCAGATTGGC--CCGGCAGCCTAGGGTAAGGCTCCGCTGACCTCA-TGGCACCCCTCT-------CAGTCTAATCCAGCCTTGGATTG----CCACTTCCCCTTTTT----------GGCTTTGCCTCGTCCT-CCCTGGCCTGGCGTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503287 385 - 227556264 tctcatga-------------------------------------------------ccttaaGTCGGGTGAGAACTGGATGTAATCTGGAGTGGCCAGCGTGTTCCGCTGGGGCTGTGATTTCAGTTACTCGT-----AAGAAAGCAGGAGGCAGCTACAGTCACTTAGGCCCAGCGCCAGTGCAGCGTCTCTGAATTCCTTTTGCCCTGCGTGCGTCTGGGGACTTCAGACTGTCCGTCTGCTCTCCGGATTCTACGGTCCAACTGGCACTTCTGTGCTAAAAATGAA--------GGCATCATTGAGGCATTGCAGACCGCAGATTGGC--CCGGCAGCCTGGGGTAAGGCTCCGCTGACCTCA-TGGCACCCCTCT-------CAGTCTAATCCAGCCTTGGATTG----CCACTTCCCCTTTTT----------GGCTTTGCCTTGTCCT-CCCTGGCCTGGCATCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16552975 385 - 220367699 TCTCATGA-------------------------------------------------CCTTAAGTCGGGTGAGAACTGGATGTAATCTGGAGTGGCCAGCGTGTTCCGCTGGGGCTGAGATTTCAGTTACTCGT-----AAGAAAGCAGGAGGCAGCTACAATCACTTAGGCCCAGCGCCAATGCAGTGTCTCCGACTTCCTTTTGCCCTGCGTGTGTCTGGGGACTTCAGACTGTCCGTCTGCTCTCCGGATTCTACGGTCCAACTGGCACTTCTGTGCTAAAAATGAA--------GGCATAATTGAGGCATTGCAGACCGCAGATTGGC--CCCGCAGCCTGGGGTAAGGCTCAGCTGACCTCA-TGGCACCCCTCT-------CAGTCTAATCCAGTCTTGGATTG----CCACTTCCCCTTTTT----------GGCTTTGCCTCGTCCT-CCCTGGCCTGGCATCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82352099 385 + 85787240 tctcatga-------------------------------------------------ccttaaGTCGGGTGAGAACTGGATGTAATCTGGAGTGGCCAGCATGTTCCGCTGGGGCTGTGATTTCAGTTACTCGT-----AAGAAAGCGGGAGGCAGCTACAATCACTGAGGCCCAGCGCCAGTGCAGCATCTCTGACTTCCTTTTGCCCTGCGTGCGTCTGGGGACTTCAGACTGTCCGTCTGCTCTCCGGATTCTACGGTCCAACTGGCACTTCTGTGCTAAAAATGAA--------GGCATAATTGCGGCATTGCAGACCCCAGATTGGC--CCGGCAGCCTGGGGTAAGGCTCAGCTGACCTCA-TGGCACCCCTCT-------CAGTCTAATCCAGCCTTGGATTG----CCACTTCCCCTTTTT----------GGCTTTGCCTCGTCCT-CCCTGGCCTGGCATCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14022303 383 - 49578535 tctcatga-------------------------------------------------ccttaaGTCGGGCAAGAATTGGATGTAATCTGGAGTGCCCAGCATGTTCCGCTGGGCCTGTGATTTCAGTTATCCAT-----AAGAAAGCAGGAGACAGCTGAAATCACTTAGACCCAGCGCCAGTG--GGCTCTCTGACTTCTTTTTGCCCTGATGGTCTCTGGGGGCTTCAGACTGTCCATCTGCTCTCTGGATTCTGCGGTCCAACTGGCACTTCTATGCTAAAAATGAAGAGATAATGGCAAAATTGAGGAATTGCGGAGCACAGA-GGGC--CCTGCAGTCT-GGGTGAGGCCCAGCTGCCTCCA-CGG---TCCTCT-------CAGTCTA----AGTCTCAGAGTG----CCACTTCCCCTTTTT----------GGCTTTGCCTTGTCCTCCCCTGGCCTGGCATCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178653170 330 + 195471971 ttGTATGG-------------------------------------------------C----------GAAAGGGTTGGAGCTAATCTGAACT-TCCAGAGTGTTC--------CTAGGATTTCAATTACCTTTTAAAAAAAAAAGTAGGGAACGGCTAATCACAGCTGGGCCCAGAAACAGCGAGGTGTCCTTGCCTTCC---TGCCCGGCT----------GCCTT---ATTGTCCCTTTCATGTCTGAATTCAGCTACCCACTTGGC-CTTCTGTGCTAGCAATTAT--------------------------------------TGGC--TTTGTGACCTAGCATAAGATACAGTGGGCTTCCTTGGCATTCCTCTG------TGGTCAGTCCCTATTTTAGACTT----TTACTTCCTCTGTGTTCTCCCAGACACCTATACCTGGTGTACCTGTTGCCT------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36226787 441 + 80974532 tctcatgaataggtaaataaaatcttaaaaacaaaAAACAAAAAACAAAGCTAGTGTCCCTAAACCAGGTAAGAACTGCACGTAATCTGGACTCCTCAGCGTGTTCTAATAGACCTGTGGTCTCAGTCATCCTC-----CTGAAAGT-GGGGACAGGTAAGAGTAGTCAGACCCTGGGGCTATG-GATGTCTCCGCCCCACACCTGCCCTGTTCACCTGCGGGCACTTCTGACTGTCCTGCACACCTGTAGGTTCTGCTGCCCAGCTAGCCCAACCCTGCCAAATAGGGA--------GGCATAACTGGGCAAGCCCTGCCTGCAGATCATCAGCCTGCTACC-AGGGCAGGGTTTGGTGGGCTCCT-GGGTACTCTCCTATCAACTCAGTC----CCAGCCCTGGATTGGGATCATCCTTCCCCTTAT----------GACCTTGCCTTGGCCTCCCTGGGCCTGGTATCC i canFam3.chr7 I 169 C 0 a score=602187.000000 s hg38.chr1_KI270759v1_alt 29642 182 + 425601 CAGGCTCCTGCTTGTGGTTTACCTG-------------TGTG-------------ACACACACAGACACATATACGCACTCTAGTGC-CA------AACATGACAG---ACCAGGAGGTTGGTTTTCTTAGCCTGA-GAATCTGCATCATCT-----GAATGAGGT--------------AGA---ATCTGGAGGAGTCTGGACTGTGAGGGAGGAAGCTTGGGAA-G-GAGTCAGGATGGGA s panTro4.chr1 224769453 182 + 228333871 CAGGCTCCTGCTTGTGGTTTACCTG-------------TGTG-------------ACACACACAGACACATATACGCACTCTAGTGC-CA------AACATGACAG---ACCAGGAGGTTGGTTTTCTTAGCCTGA-GAATCTGCATCATCT-----GAATGAGGT--------------AGA---ATCTGGAGGAGTCTGGACTGTGAGGGAGGAAGCTTGGGAA-G-GAGTCAGGATGGGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135073 182 - 229942017 CAGGCTCCTGCTTGTGGTTTACCTG-------------TGTG-------------ACACACACAGACACGTATACACACTCTAGTGC-CA------AACACGACAG---ACCAGGAGGTTGGTTTTCTTAGCCTGA-GAATCTGCATCATCT-----GAATGAGGT--------------AGA---ATCTGGAGGAATCTGGACTGTGAGGGAGGAAGCTAGGGAA-G-GAGTCAGGATGAGA i ponAbe2.chr1 I 156 C 0 s nomLeu3.chr5 140023867 182 - 143122389 CAGGCTTCTGCTTGTGGTTTACCTG-------------TGTG-------------acacacacagacacatatacacacTCTAGTGC-CA------AACACGACAG---ACCAGGAGGTTGGTTTTCTTAGCCTGA-GAATCTGCATTATCT-----GAATGAGGT--------------AGA---ATCTGGAGGAGTCTGGACTGTGAGGGAGGAAGCTTGGGAA-G-GAGTCAGGATGGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16740823 182 - 229590362 CAGGCTCCTGCTTGTGGTTCACCTG-------------TGGG-------------ACACACACAGACACATGTACACACTCTAGTGC-CA------AACAGGACAG---ACCAGGAGGTTGCTTTTCTTAGCCTGA-GAATCTGCATCATCT-----GAATGAGGT--------------AGA---ATCTGGAGGAGTCTGGACTGTGAGGGAGGAGGCTTGGGAA-G-GAGTCAGGATGGGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503672 182 - 227556264 CAGGCTCCTGCTTGTGGTTTACCTG-------------TGGG-------------ACACACACAGACACATGTACACACTCTAGTGC-CA------AACAGGACAG---ACCAGGAGGTTGCTTTTCTTAGCCTGA-GAATCTGCATCATCT-----GAATGAGGT--------------AGA---ATCTGGAGGAGTCTGGACTGTGAGGGAGGAGGCTTGGGAA-G-GAGTCAGGATGGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553360 182 - 220367699 CAGGCTCCTGCTTGTGGTTTACCTG-------------tgtg-------------acacacacagacacatatacacactctAGTGC-CA------AACACGACAG---ACCAGGAGGTTGCTTTTCTTAGCCTGA-GAATCTGCATCATCT-----GAATGAGGT--------------AGA---ATCTGGAGGAGTCTGGACTGTGAGGGAGGAGGCTTGGGAA-G-GAGTCAGGATGGGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82352484 182 + 85787240 CAGGCTCCTGCTTGTGGTTTACCTG-------------TGTG-------------ACACACACAGACACATATATGCACTCTAGTGC-CA------AACGTGACAA---ACCAGGAGGTTGCTTTTCTTAGCCTGA-GAATCTGCATCATCT-----GAACGAGGT--------------AGA---ATCTGGAGGAGTCTGGACTGTGAGGGAGGAGGCTTGGGAA-G-GAGCCGGGACGGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14022686 179 - 49578535 GAGACTCCTGCAGGT-GCTTACCTG-------------TGTG-------------ACACACACACACACATATATGCACTCTAGTGC-CA------AAAGTGATGC---ACCAGGAGGTTGGTTTTCTTGGCCTGA-GAATCTGTGTCATCT-----GAATGAGGT--------------AGA---GGCTGAAGGAG-CTGGACTAGGAGGGAGGAGACTTGGGAA-G-TCGTCAGGATG-GA i calJac3.chr19 C 0 C 0 s mm10.chr1 178653500 183 + 195471971 -AGAGCCCTGCATGTA-------TG-------------TGTG----------------CACACACATATATGTGC-CCCTCCAGCTC-CCTTACATAACAGGTGAA---ATCAAGAGTCTGA-----TTAACCTGA-GGAGCTG--GCATCT-----GTAGGATGCTGGGATGAAGCACAAGA---GTCTCAGGGAGT-TGGATTGCAAGGAAGGAAGCTTGAGAAGG-GAGTCAGGGTGGAA i mm10.chr1 C 0 C 0 s canFam3.chr7 36227228 221 + 80974532 CAGACTTGTGCATCCCAAACACTTGCTGCCCAAGGCACTGTGCATGCTGGTATGcacacacacgcacacacacacacaGTCAAACACTCA------AGCATGACAGCAAACCAGAGAGTTTGCTTTCTTCACCTGAGGAATCGGCAGTCTTTAGACAGGATGAGGT--------------GGAAGTATCGAGAAGGCACTGCCCAGTGACCAA-GAGGCTTGGGAA-GTGAGTCAGAACTGGA i canFam3.chr7 C 0 I 1 a score=68358.000000 s hg38.chr1_KI270759v1_alt 29824 23 + 425601 TGTGCTGCCCATCAACGCCTGCA s panTro4.chr1 224769635 23 + 228333871 TGTGCTGCCCATCAACGCCTGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135255 23 - 229942017 TTTGCTGCTCACCAACGCCTGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024049 23 - 143122389 TTTGCTGCCCACCAACGCCTGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741005 23 - 229590362 TTTGCTGCCCACCAACGCCTGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503854 23 - 227556264 TTTGCTGCCTACCAACGCCTGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553542 23 - 220367699 TTTGCTGCCCACCAACGCCTGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82352666 23 + 85787240 TTTGCTGCCCACCAATGCCTGCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14022865 23 - 49578535 TTCTCTGCTCACCAGCAGCTGCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178653683 23 + 195471971 CCCTCCATCCACCATTTCCTGGA i mm10.chr1 C 0 I 1 e canFam3.chr7 36227449 1 + 80974532 I a score=27504.000000 s hg38.chr1_KI270759v1_alt 29847 8 + 425601 GGGAAAGA s panTro4.chr1 224769658 8 + 228333871 GGGAAAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135278 8 - 229942017 GGGAAAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024072 8 - 143122389 GGGAAAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741028 8 - 229590362 GGGAAAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503877 8 - 227556264 GGGAAAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553565 8 - 220367699 GGGAAAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82352689 8 + 85787240 GGGAAAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14022888 8 - 49578535 GGGAAAGA i calJac3.chr19 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I a score=16044.000000 s hg38.chr1_KI270759v1_alt 29855 6 + 425601 AGAGTC s panTro4.chr1 224769666 6 + 228333871 AGAGTC i panTro4.chr1 C 0 I 462 s ponAbe2.chr1 226135286 6 - 229942017 AGAGTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024080 6 - 143122389 AGAGTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741036 6 - 229590362 AGAGTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503885 6 - 227556264 AGAGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553573 6 - 220367699 AGAGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82352697 6 + 85787240 AGAGTC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=12137.000000 s hg38.chr1_KI270759v1_alt 29861 6 + 425601 CCACGC s panTro4.chr1 224770134 6 + 228333871 CCACGC i panTro4.chr1 I 462 C 0 s ponAbe2.chr1 226135292 6 - 229942017 CCACAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024086 6 - 143122389 CCATGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741042 6 - 229590362 CCACGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503891 6 - 227556264 CCACGC i macFas5.chr1 C 0 T 23 s papAnu2.chr1 16553579 6 - 220367699 CCACGC i papAnu2.chr1 C 0 T 23 s chlSab2.chr25 82352703 6 + 85787240 CCACGC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=26103.000000 s hg38.chr1_KI270759v1_alt 29867 36 + 425601 AGGGAAAGGAGAGTCCCACGCGGGAAAAGGAGAGTG---------------- s panTro4.chr1 224770140 36 + 228333871 AGGGAAAGGAGAGTCCCACGCGGGGAAAGGAGAGTC---------------- i panTro4.chr1 C 0 T 504 s ponAbe2.chr1 226135298 36 - 229942017 AGGGAAAGGAGGGTCCCACGCGGGGAAAGAAGAGTC---------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024092 36 - 143122389 AGGGAAAGGAGGGTCCCATGCTGGGAAAGGAGAGTC---------------- i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82352709 52 + 85787240 AGGGAAAGGAGAGTCTCATGCGGGGAAAGAAGAGTCCCATGCCGGGAGAGTT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C e rheMac3.chr1 16741048 0 - 229590362 C e papAnu2.chr1 16553585 23 - 220367699 T e macFas5.chr1 223503897 23 - 227556264 T a score=3386.000000 s hg38.chr1_KI270759v1_alt 29903 4 + 425601 CCAC s panTro4.chr1 224769672 4 + 228333871 CCAC i panTro4.chr1 T 504 C 0 s ponAbe2.chr1 226135334 4 - 229942017 CCAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024128 4 - 143122389 CCAT i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82352761 4 + 85787240 CCAC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C e rheMac3.chr1 16741048 0 - 229590362 C e papAnu2.chr1 16553585 23 - 220367699 T e macFas5.chr1 223503897 23 - 227556264 T a score=108413.000000 s hg38.chr1_KI270759v1_alt 29907 70 + 425601 GCGGGGAAAGGAGAGTCCCACGAGGGGAAAGGAGAGTCCCACGAGGGGAAAGGGGGGTCCCACGCGG---GGA s panTro4.chr1 224769676 70 + 228333871 GTGGGGAAAGGAGAGTCCCACGCGGGGAAAGGAGAGTCCCACGAGGGGAAAGGGGGGTCCCACACAG---GGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135338 70 - 229942017 GAAGGGAAAGGAGGGTCCCACACAGGGAAAGGAGAGTCCCACGAAGGGAAAGGAGGGTCCCACACAG---GGA i ponAbe2.chr1 C 0 I 21 s nomLeu3.chr5 140024132 70 - 143122389 GCAGGGAAAGGAAGGTCCCACGCGGGGAAAGAAGAGTCCCACGCGGGGAAAGAAGAGTCCCACGCGG---GGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741048 40 - 229590362 -----------------------GGGGAAAGGAGGGTCCCACACAGGGAAAGAAGAATCCCAG---------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503874 67 - 227556264 GCAGGGAAAGAAGAGTCCCACGCGGGGAAAGGAGGGTCCCACGCAGGGAAAGAAGAATCCCAGGCAG------ i macFas5.chr1 T 23 C 0 s papAnu2.chr1 16553562 67 - 220367699 GCAGGGAAAGAAGAGTCCCACGCGGGGAAAGAAGAGTCTCACGCAGGGAAAGGAGGGTCCTATGCAG------ i papAnu2.chr1 T 23 C 0 s chlSab2.chr25 82352765 70 + 85787240 GCAGGGAAAGAAGAGTCTCACACAGGGAAAGGAGGGTCCCACGCAGGGAAAGGAGAGTCTCATGCGGGAA--- i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=20270.000000 s hg38.chr1_KI270759v1_alt 29977 14 + 425601 AAGAAGGGTCCCAC s panTro4.chr1 224769746 14 + 228333871 AAGAAGAGTCCCAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135429 14 - 229942017 AAGGAAGGTCCCAC i ponAbe2.chr1 I 21 C 0 s nomLeu3.chr5 140024202 14 - 143122389 AAGAAGAGTCCCAC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223503941 12 - 227556264 --AGAGAGTCCCAC i macFas5.chr1 C 0 T 79 s papAnu2.chr1 16553629 12 - 220367699 --GGAGAGTTCCAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82352835 14 + 85787240 AAGGAGGGTCCCAC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C e rheMac3.chr1 16741088 0 - 229590362 C a score=40968.000000 s hg38.chr1_KI270759v1_alt 29991 23 + 425601 GCGGGGAAAGAAGGGTCCCACGT s panTro4.chr1 224769760 23 + 228333871 GCGGGGAAAGAAGAGTCCCACGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135443 23 - 229942017 GCAGGGAAAGAAGAGTCCCACGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024216 18 - 143122389 GCGGGG-----AGAGTCCCACGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741088 16 - 229590362 GCAG-------AGAGCCCCACGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503874 23 - 227556264 GCAGGGAAAGAAGAGTCCCACGC i macFas5.chr1 T 79 C 0 s papAnu2.chr1 16553641 23 - 220367699 GCAGGGAAGGGAGAGTCCCACGC i papAnu2.chr1 C 0 T 79 s chlSab2.chr25 82352849 23 + 85787240 GCAGGGAAAGAAGAGTCCCACGC i chlSab2.chr25 C 0 I 16 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=103109.000000 s hg38.chr1_KI270759v1_alt 30014 49 + 425601 GGGGAAAGAAGAGTCCCACGAGGGGAAAGGAGGGTCCCACGCAGGG-----AGA s panTro4.chr1 224769783 49 + 228333871 GGGGAAAGAAGAGTCCCACGAGGGGAAAGGAGGGTCCCATGCAGGG-----AGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135466 54 - 229942017 GGAGAAAGAAGAGTCCCACGAAGGGAAAGGAGGGTCCCACGCAGGGAAAGAAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024234 53 - 143122389 AGAGAAAGAAGAGTCCCACAAAGGGAAAGGAGAGTCCCACGCAGGGAAAG-AGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741104 49 - 229590362 GGGGAAAGAAGAGTCTCACGCAGGGAAAGGAGGGTCCTACGCAGGG-----AGA i rheMac3.chr1 C 0 I 79 s macFas5.chr1 223503897 49 - 227556264 GGGGAAAGGAGGGTCCCACGCAGGGAAAGAAGAATCCCAGGCAGAG-----AGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553585 49 - 220367699 GGGGAAAGAAGAGTCTCACGCAGGGAAAGGAGGGTCCTATGCAGGG-----AGA i papAnu2.chr1 T 79 C 0 s chlSab2.chr25 82352888 49 + 85787240 AGGGAAAGAAGAGTCTCACACAGGGAAAGGAGGGTCCCACGCAGGG-----AAA i chlSab2.chr25 I 16 I 5 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=17654.000000 s hg38.chr1_KI270759v1_alt 30063 14 + 425601 GTCCCACG-------------------------------------CAGGGA s panTro4.chr1 224769832 51 + 228333871 GTCCCACGCAGGGAGAGTCCCACGCAGGGAAAGGGGAGTCCCACCCAGGGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135520 30 - 229942017 GTCCCATGCGGGGAGAGCCCCATG---------------------CAGGGA i ponAbe2.chr1 C 0 T 142 s nomLeu3.chr5 140024287 14 - 143122389 GTCCCACG-------------------------------------CAGGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741232 14 - 229590362 GTCCCACG-------------------------------------CAGGGA i rheMac3.chr1 I 79 C 0 s macFas5.chr1 223503946 14 - 227556264 GTCCCACG-------------------------------------CAGGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553634 14 - 220367699 GTTCCACG-------------------------------------CAGGGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82352942 14 + 85787240 GTCCTATG-------------------------------------CCTGGA i chlSab2.chr25 I 5 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=32068.000000 s hg38.chr1_KI270759v1_alt 30077 16 + 425601 AAGGAGAGTCCCACGC s panTro4.chr1 224769883 16 + 228333871 AAGGAGAGTCCCACGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135408 16 - 229942017 AAGGAGAGTCCCACGC i ponAbe2.chr1 T 142 C 0 s nomLeu3.chr5 140024301 16 - 143122389 AAGGAGAGTCCCACGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741246 11 - 229590362 AAGAAGAGTCC----- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503960 16 - 227556264 AAGAAGAGTCCCACGC i macFas5.chr1 C 0 I 42 s papAnu2.chr1 16553648 16 - 220367699 AGGGAGAGTCCCACGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82352956 16 + 85787240 AAGGATAGTCCCACGC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=19699.000000 s hg38.chr1_KI270759v1_alt 30093 21 + 425601 AGGGAAAGGAAGGTCCCACGC s panTro4.chr1 224769899 21 + 228333871 AGGGAAAGGAAGGTCTCACGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135424 21 - 229942017 AGGGAAAGGAAGGTCCCACGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024317 21 - 143122389 GGGGAAAGGAGAGTCCCACGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741257 17 - 229590362 ----AAAGGAGGGTCCCACGT i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16553664 21 - 220367699 AGGGAAAGAAGAGTCCCACGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82352972 5 + 85787240 -----AGGGA----------- i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C e macFas5.chr1 223503976 42 - 227556264 I a score=2804.000000 s hg38.chr1_KI270759v1_alt 30114 21 + 425601 AGGGAAAGA------------------------------------------------------------------------------AGAGCCCCACGC s panTro4.chr1 224769920 21 + 228333871 AGGGAAAGA------------------------------------------------------------------------------AGAGCCCCACGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135445 21 - 229942017 AGGGAAAGA------------------------------------------------------------------------------AGAGTCCCACGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024338 99 - 143122389 GGGGAAAGAAGAGTCCCACGAAGGGGAAGGAGGGTCCCACGCAGGGAAAGAGAGTCCCACGCAGGGAAAGAAGAGTCCCACGTGGGGAGAGTCCCACGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741274 21 - 229590362 AGGGAAAGA------------------------------------------------------------------------------AGAGTCCCACGC i rheMac3.chr1 C 0 T 268 s macFas5.chr1 223504018 5 - 227556264 AGGGA---------------------------------------------------------------------------------------------- i macFas5.chr1 I 42 C 0 s papAnu2.chr1 16553685 21 - 220367699 AGGGAAAGG------------------------------------------------------------------------------ATAGTGCCACTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82352977 11 + 85787240 ----------------------------------------------------------------------------------------GAGTCCCACGC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=18615.000000 s hg38.chr1_KI270759v1_alt 30135 21 + 425601 GGAGAAGGAGGAGTCCCACGA s panTro4.chr1 224769941 21 + 228333871 GGAGAAAGAAGAGTCCTACGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135466 21 - 229942017 GGAGAAAGAAGAGTCCCACGA i ponAbe2.chr1 C 0 T 210 s nomLeu3.chr5 140024437 21 - 143122389 GGAGAAAGAAGAGTCCCACGA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223504023 11 - 227556264 ----------GAGTCCCACGC i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82352988 21 + 85787240 CGGGAAAGAAGAGTCCCACAC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C e rheMac3.chr1 16741295 268 - 229590362 T e papAnu2.chr1 16553706 0 - 220367699 C a score=21300.000000 s hg38.chr1_KI270759v1_alt 30156 21 + 425601 AGGGAAAGGAGG------------------------------------------------------------------------------GTCCCACGA s panTro4.chr1 224769962 99 + 228333871 AGGGAAAGGAGGGTCCCACGCAGGGAAAGAAGAGTCCCACGCGGGAAGAGCCCCATGCAGGGAAAGAGGGTCCCACGCAGGGAAAGGAGAGTCCCACGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135277 21 - 229942017 AGGGAAAGAAGA------------------------------------------------------------------------------GTCCCACAA i ponAbe2.chr1 T 210 C 0 s nomLeu3.chr5 140024458 21 - 143122389 AGGGAAAGGAGG------------------------------------------------------------------------------GTCCCACGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741027 21 - 229590362 AGGGAAAGAAGA------------------------------------------------------------------------------GTCCCACGC i rheMac3.chr1 T 268 C 0 s macFas5.chr1 223504034 21 - 227556264 AGGGAAAAGAGA------------------------------------------------------------------------------GTCCCACGT i macFas5.chr1 C 0 T 158 s papAnu2.chr1 16553706 16 - 220367699 -----AGGGAGA------------------------------------------------------------------------------GTCCCACGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353009 21 + 85787240 CGGGAAAGAAGA------------------------------------------------------------------------------GTCTCACGC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=72524.000000 s hg38.chr1_KI270759v1_alt 30177 31 + 425601 AGGGAAAGGAGGGTCCCACGCAGGGAAAGAA s panTro4.chr1 224770061 31 + 228333871 AGGGAAAGGAGGGTCCCACGCAGGGAAAGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135298 31 - 229942017 AGGGAAAGGAGGGTCCCACGCGGGGAAAGAA i ponAbe2.chr1 C 0 I 21 s nomLeu3.chr5 140024479 30 - 143122389 AGGGAAA-GAGAGTCCCATGCAGGGAAAGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741048 31 - 229590362 GGGGAAAGGAGGGTCCCACACAGGGAAAGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503897 31 - 227556264 GGGGAAAGGAGGGTCCCACGCAGGGAAAGAA i macFas5.chr1 T 158 C 0 s papAnu2.chr1 16553722 31 - 220367699 AGGGAAAGGAGGGTCCCACGCAGGGAAAGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353030 31 + 85787240 AGGGAAAGGAGGGTCCCGCTCAGGGAAAGAA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=5688.000000 s hg38.chr1_KI270759v1_alt 30208 12 + 425601 GAGTCCCACGC-G s panTro4.chr1 224770092 12 + 228333871 GAGTCCCACGC-G i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140024509 12 - 143122389 GAGTCCCACGT-G i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741079 12 - 229590362 GAATCCCAGGCA- i rheMac3.chr1 C 0 I 62 s macFas5.chr1 223503928 11 - 227556264 GAATCCCAGGC-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553753 11 - 220367699 GAATCCCAGGC-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353061 8 + 85787240 GAGTCCTA----- i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C e ponAbe2.chr1 226135329 21 - 229942017 I a score=4655.000000 s hg38.chr1_KI270759v1_alt 30220 24 + 425601 GGGAGAGCCCCATGCAGGGAAA-GA s panTro4.chr1 224770104 25 + 228333871 GGAAGAGCCCCATGCAGGGAAAGGA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140024521 24 - 143122389 GGGAGAGTCCCACGTGGAGAAA-GA i nomLeu3.chr5 C 0 I 42 s macFas5.chr1 223503939 7 - 227556264 -----------------AGAGA-GA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553764 7 - 220367699 -----------------AGAGA-GA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353069 12 + 85787240 ------------TGCCGGGAAA-GA i chlSab2.chr25 C 0 I 2 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C e rheMac3.chr1 16741091 62 - 229590362 I e ponAbe2.chr1 226135329 21 - 229942017 I a score=807.000000 s hg38.chr1_KI270759v1_alt 30244 2 + 425601 GG s panTro4.chr1 224770129 2 + 228333871 GG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135350 2 - 229942017 GG i ponAbe2.chr1 I 21 C 0 s nomLeu3.chr5 140024587 2 - 143122389 GA i nomLeu3.chr5 I 42 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C e rheMac3.chr1 16741091 62 - 229590362 I e chlSab2.chr25 82353081 2 + 85787240 I e papAnu2.chr1 16553771 0 - 220367699 C e macFas5.chr1 223503946 0 - 227556264 C a score=58798.000000 s hg38.chr1_KI270759v1_alt 30246 30 + 425601 GTCCCACGCAGGGAAAGGAGAGTCCCACGC s panTro4.chr1 224770131 30 + 228333871 GTCCCACGCAGGGAAAGGAGAGTCCCACGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135352 30 - 229942017 GTCCCACACAGGGAAAGGAGAGTCCCACGA i ponAbe2.chr1 C 0 I 105 s nomLeu3.chr5 140024589 30 - 143122389 GTCCCACGCAGGGAAAGAAGAGTCCCACGT i nomLeu3.chr5 C 0 I 58 s rheMac3.chr1 16741153 30 - 229590362 GTCCCACGCAGGGAAGGGAGAGTCCCACGC i rheMac3.chr1 I 62 C 0 s macFas5.chr1 223503946 30 - 227556264 GTCCCACGCAGGGAAAGAAGAGTCCCACGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553771 23 - 220367699 GTCCCACGCAGGGAAAGGATAGT------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353083 25 + 85787240 GTCCCACGCAGGG-----AGAGTCCCACGC i chlSab2.chr25 I 2 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=64921.000000 s hg38.chr1_KI270759v1_alt 30276 40 + 425601 AGGGAAAGGAGGGTCCCACGCAGGGAAAGGAGAGTCCCAC s panTro4.chr1 224770161 40 + 228333871 GGGGAAAGGAGAGTCCCACGCGGGGAAAGGAGAGTCCCAC i panTro4.chr1 C 0 I 126 s ponAbe2.chr1 226135487 40 - 229942017 AGGGAAAGGAGGGTCCCACGCAGGGAAAGAAGAGTCCCAT i ponAbe2.chr1 I 105 C 0 s nomLeu3.chr5 140024677 40 - 143122389 AGGGAAAGGAGGGTCCCACACAGGGAAAGGAGGGTCCCAC i nomLeu3.chr5 I 58 I 20 s rheMac3.chr1 16741183 40 - 229590362 AGGGAAAGAAGAGTCCCACGCAGGGAAAGGATAGTGCCAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223503976 40 - 227556264 AGGGAAAGAAGAGTCCCACGCAGGGAAAGGATAGTGCCAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553794 18 - 220367699 ----------------------GGGAAAGGATAGTGCCAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353108 35 + 85787240 AGGGAAAGAAGAGTCCCATGCAGGGAG-----AGTCTCAC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=37419.000000 s hg38.chr1_KI270759v1_alt 30316 26 + 425601 GCAGGGAGAGTCCCACG---------------------------------------------------------------CAGGGAAAG s panTro4.chr1 224770327 63 + 228333871 GCAGGGAGAGTCCCACGCAG--------------------------GGAGAGTCCCACGCAGGGAAAGGGGAGTCCCACCCAGGGAAAG i panTro4.chr1 I 126 I 141 s ponAbe2.chr1 226135527 26 - 229942017 GCGGGGAGAGCCCCATG---------------------------------------------------------------CAGGGAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024737 89 - 143122389 GTCGGGAGAGTCCCACGCAGGGAAAGGAAAGTCCAACGCGGGGAAAGGAGAGTCCCACGTGGGGAAAGGAGAGTCCCACGCGGGGAAAG i nomLeu3.chr5 I 20 C 0 s rheMac3.chr1 16741223 26 - 229590362 TCAGGGAGAGTCCCACG---------------------------------------------------------------CAGGGAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223504016 26 - 227556264 GCAGGGAGAGTCCCACG---------------------------------------------------------------CAGGGAAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553812 26 - 220367699 GCAGGGAGAGTCCCACG---------------------------------------------------------------CAGGGAAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353143 26 + 85787240 GCAGGGAGAGTTCCACG---------------------------------------------------------------CAGGGAAAG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=128444.000000 s hg38.chr1_KI270759v1_alt 30342 105 + 425601 GAGGGTCCCACGCAGGGAAAGGAGAGTCCCACGCAGGGAAAGGAGGGTCCCACGCAGGGAAAGGAGGGTCCCACGCAGGGAAAGAAGAGTCCCACGCAGGGAGAG s panTro4.chr1 224770531 105 + 228333871 GAGGGTCCCACGCAGGGAAAGGAGAGTCCCACGCAGGTAAAGGAGGGTCCCACGCAGGGAAAGGAGGGTCCCACTCAGGGAAAGGAGAGTCCCACGCAGGGAGAG i panTro4.chr1 I 141 I 116 s ponAbe2.chr1 226135553 65 - 229942017 -AGGGTCCCACGCAGGGAAAGGAGAGTCCCACGCAGGGAAAGGAGGGTCCCGCGCAGGGAATGGAG--------------------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024826 105 - 143122389 AAGGGTCCCACGCGGGGAAAGGAGAGTCCCACGCGGGGAAAGGAGGGTCCCACGCGGGGAAAGGAGGGTCCCACGCAGGGAAAGGAGAGTCCCACGCAGGGAGAG i nomLeu3.chr5 C 0 I 42 s rheMac3.chr1 16741249 53 - 229590362 AAGAGTCC------------------------------AAAGGAGGGTCCCACGTAGGGAAAGAAGAGTCCCACGCAGGGAGA---------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223504042 83 - 227556264 GAGAGTCCCACGTAGGGAAAGAAGAGTCCCACGCAGGGAAAGGAGGGTCCCACGTAGGGAAAGAAGAGTCCCACGCAGGGAGA---------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553838 83 - 220367699 GAGAGTCCCACGTAGGGAAAGAAGAGTCCCACGCAGGGAAAGGAGGGTCCCACGCAGGGAAAGAAGAGTCCCACGCAGGGAGA---------------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353169 67 + 85787240 AAGAGTCTCACACAGGGAAAGAATAGTGCCACGCAGGGAAAGGAGGGTCCCACGCAGGGAAA----------------AGAGA---------------------- i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=-19699.000000 s hg38.chr1_KI270759v1_alt 30447 20 + 425601 TCCCATGCAGGGAAAGAAGG-------------------------------------- s panTro4.chr1 224770752 21 + 228333871 TCCCACGCAGGGAAAGGAGGG------------------------------------- i panTro4.chr1 I 116 C 0 s ponAbe2.chr1 226135618 2 - 229942017 ------------------GG-------------------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140024973 58 - 143122389 TCCCACGCAGGGAAAGGAGGGTCCCACGCAGGAAGAGCCCCACGCAGGGAAAGGAGGT i nomLeu3.chr5 I 42 C 0 s rheMac3.chr1 16741302 1 - 229590362 ---------------------------------------------------------G i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223504125 1 - 227556264 ---------------------------------------------------------G i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553921 1 - 220367699 ---------------------------------------------------------G i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353236 1 + 85787240 ---------------------------------------------------------G i chlSab2.chr25 C 0 C 0 e mm10.chr1 178653706 1 + 195471971 I e canFam3.chr7 36227449 1 + 80974532 I e calJac3.chr19 14022896 0 - 49578535 C a score=26696.000000 s hg38.chr1_KI270759v1_alt 30467 10 + 425601 TCCCACGCAG s panTro4.chr1 224770773 10 + 228333871 TCCCACGCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135620 10 - 229942017 TCCCGCGCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140025031 10 - 143122389 TCCCACGCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741303 10 - 229590362 TCCCACGTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223504126 10 - 227556264 TCCCACGTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553922 10 - 220367699 TCCCACGCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353237 10 + 85787240 TCCCACGTAG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36227450 10 + 80974532 TTCCCTGAAG i canFam3.chr7 I 1 C 0 e mm10.chr1 178653706 1 + 195471971 I e calJac3.chr19 14022896 0 - 49578535 C a score=19817.000000 s hg38.chr1_KI270759v1_alt 30477 7 + 425601 GGAAAGG s panTro4.chr1 224770783 7 + 228333871 GGAAAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135630 7 - 229942017 GGAAAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140025041 7 - 143122389 GGAAAGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741313 7 - 229590362 GGAAAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223504136 7 - 227556264 GGAAAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553932 7 - 220367699 GGAAAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353247 7 + 85787240 GGAAAGA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178653707 6 + 195471971 GGAAAG- i mm10.chr1 I 1 C 0 s canFam3.chr7 36227460 7 + 80974532 AGACAGG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14022896 0 - 49578535 C a score=155443.000000 s hg38.chr1_KI270759v1_alt 30484 72 + 425601 AGAGTCCCACGCAGGGATTGCTGTTC-CACTCTGCATAGCCGCTGGGCTTTCTGCTGCACGGATGCCATCTAG s panTro4.chr1 224770790 71 + 228333871 AGAGTCCCACGCAGGGATTGCTGTTC--ACTCTGCATAGCCGCTGGGTTTTCTGCTGCACGGATGCCATCTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135637 26 - 229942017 AGGGTCCCACGCAGGGATNNNNNNNN----------------------------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140025048 72 - 143122389 AGAGTCCCACGCAGGGATTGCTGTCC-CACTCTGCATAGCCGCTGGGCTTTCTGCTGCACAGATGCCATCTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741320 71 - 229590362 AGAGT-CCACGCGGGGATTGCTGGCC-CACTCTGCATAGCTGCTGGCCTTTCTGCTGCACGGATGCCATCTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223504143 71 - 227556264 AGAGT-CCACGCGGGGATTGCTGGCC-CACTCTGCATAGCTGCTGGCCTTTCTGCTGCACGGATGCCATCTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16553939 71 - 220367699 AGAGT-CCACGCGGGGATTGCTGGCC-CACTCTGCATAGCTGCTGGCCTTTCTGCTGCACGGATGCCATCTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353254 72 + 85787240 AGAGTCCCACGCGGGGATTGCTGTCC-CACTCTGCATAGCTGCTGGGCTTTCTGCTGCACGGATGCCATCTGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14022896 72 - 49578535 AGAGTCCCATGTAGGGATTGCTGTCC-CATTCTGCAGAGCTGCTGGGCTTTATGCTGCACGGATGCCATCTAG i calJac3.chr19 C 0 I 302 s mm10.chr1 178653713 66 + 195471971 AGCTTTCTCCACAGGGAGAGCTG-CC-CATCAGACAC-----CTGGGCTTTGTCCTGCCCAGATAGTCTCTGG i mm10.chr1 C 0 C 0 s canFam3.chr7 36227467 58 + 80974532 AAGGTCATCCCCAGTGATTACTGCCCCCACTCTGGGCAGCT-CATGTTTCTGTGTTGCA-------------- i canFam3.chr7 C 0 C 0 a score=2783062.000000 s hg38.chr1_KI270759v1_alt 30556 840 + 425601 AAGAAGCACCATCCACTGTTCTCAGAAAGAAGAGAGAGGAAGGAGACAGG--AGTGCGTAGAGTGAGTGGGCCATCAGAAAAAGGACTGCTCTGGGGATGCAGGAGACCCGCTTGTAGGATT--TAGGGGCACCGTGCAAGACAG-GGGTCATGG-TATGCGGGTGCCTCCGACTGGCGGCTGCGTGGTGGATCTGGCCACTTGGTGAAGGTCGCAGTGACCTTGATCTGCTCTGGGGAGGGA------TGCTGTTTTGCCTTTCTTCACGCACGTGGAAT----CAGGACTAGCTGGACTGGCAGGAAAA----GGTTCTCTCTGGAATAATGGTTTGCTTCTCTGCAGGCTCGTGCGGCGGCTCGTGCGGAGCCCTGTGAGCACTC-------------------------------------------------------------ATTCTTGGGAGAGCACCTGAAGCCGCCTCCAGGTTTAGTCATTTCCTGCTTT--TTCCTATACATACCTTCCGTAT---CAACATGCTTTTTGA---CCTTCCTCACCTGAATACATCTGATACCCTATGAATTCTTACCTTTC-TTTTTCCAAAGTGGCCAGGAACTGAAAAT----GCAACTTCATTAAACTGGAAAGACTGGCTCTTTGCTAATTAGTCCATTTGAAATGAAACT-------AGGCTAGGATTTTTGGTTCACCTCCCAGATCACAGGAATGTATTGCCTCATTAACAGTTGAAGAAGCAGTTTTAAATGATCCAAGAACAAGCTGACCACTTGG---------ATTCCTGGGTAGTCGGCTGGGCCTCCTGTCTTTCTGCAGGTTTGTGACTTACCTTTGCTTCCATGGG---------------AAGAAAGGAGGCGGGAAATGAGGTACAAAGAGAAAATTG--------GAGTGAGTGGGCATTTTGGTTTATCAAG---TAGAAGCAAT s panTro4.chr1 224770861 848 + 228333871 AAGAAGCACCATCCACTGTTCTCAGAAAGAAGAGAGAGGAAGGAGACAGG--AGTGCGTAGAGTGAGTGGGCCATCAGAAAAAGGACTGCTCTGGGGATGCAGGAGACCCGCTTGTAGGATT--TAGGGGCACCGTGCAAGACAG-GGGTCATGG-TATGCGGGTGCCTCCGACTGGCGGCTGCGTGGTGGATCTGACCACTTGGTGAAGGTCGCAGTGACCTTGATCTGCTCTGGGGAGGGA------TGCTGTTTTGCCTTTCTTCACGCACGTGGAAT----CAGGACTAGCTGGATTGGCAGGAAAA----GGTTCTCTCTGGAATAATGGTTTGCTTCTCTGCAGGCTCGCGCGGCGGCTCGTGCGGAGCCCTATGAGCACTC-------------------------------------------------------------ATTCTTGGGAGAGCACCTGAAGCCGCCTCCAGGTTTAGTCATTTCCTGCATT--TTCCTATTCA--CCTTCCGTAT---CAACATGCTTTTTGG---CCTTCCTCACCTGAATACATCTGATACCCTATGAATTCTTACCTTTG-TTTTTCCAAAGTGGCCAGAAACTGAAAAT----GCAACTTCATTAAACTGGAAAGACTGGCTCTTTGCTAATTAGTCCATTTGAAATGAAACT-------AGGCTAGGATTTTTGGTTCACCTCCCAGATCACAGGAATGTATTGCCTCATTAACAGTTGAAGAAGCAGTTTTAAATGATCCAAGAACAAGCTGACCACTTGG---------ATTCCTGGGTAGTCGGCTGGGCCTCCTGTCTTTCTGCAGGTTTGTGACTTACCTTTGCTTCCATGGGGG--C---CCATGGGAAGAAAGGAGGCGGGAAATGAGGTACAAAGAGAAAATTG--------GAGTGAGTGGGCATTTTGGTTTATCAAG---TAGAAGCAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226135663 838 - 229942017 --NNAGCACCATCCACTG-TCTCAGAAGAAGAGTAG----AAGAGACA-G--AGTGCGTAGAGGGAGT-GGCCATCAGAAAA--GACTGCTCT-GGGATGCA-GAGACCCGC-TGTA-GATT--TA-GGGCACCGTGCAAGACAG-GGGTCATGG-TATGCGGGTG-CTCCGACTGGCGGCTGCGTGGTGGATCTGGCCACTTGGTGAAGGTCGCAGTGACCTTGATATGCTCTGGGGAGGGA------TGCTGTTTTGCCTTTCTTCACGCACGTGGAAT----CAGGACTAGCTGGACTGGCAGGAAAA----GGTTCTCTCTGGAATAATGGTTTGCTTCTCTGCAGGCTCGTGCAGCGGCTCGTGCGGAGCCCTGTGAGCACTC-------------------------------------------------------------ATTCTTGGGAGAGCACCTGAAGCCGCCTCCAGGTTTGGTCATTTCCTACTTT--TTCCTATTCA--CCTTCTGTAT---CAACATGCTTTTTGG---CCTTCCTCACCTGAATACATCTGATACCCTATGAATTCTTACCTTTC-TTTTCCCAAAGTGGCCAGGAACTGAAAAT----CCAACTTCATTAAACTGGAAAGACTGGCTCTTTGCTAATTAGTCCATTTGAAATGAAACTGAAATCCAGGCTAGGATTTTTGGTTCACCTCCCAGATCACAGGAATGTATTGCCTCATTAACAGTTGAAGAAGCAGTTTTAAATGATCCAAGAACAAGCTGACCACTTGG---------ATGCCTGGGTAGTCGGCTGGGCCTCCTGTCTTTCTGCAGGTTTTTGACTTACTTTTGCTTCCATGGGGG--C---CCATGGGAAGAAAGGAGGCGGGAAATGAGGTACAAAGAGAAAATTG--------GAGTGAGTGGGCATTTTGGTTGATCAAG---TAGAAGCAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140025120 849 - 143122389 AAGAAACACCATCCACTGTTCTCAGAAAGAAGAGAGAGGAGGGAGACAGG--AGTGCGTAGAGTGAGTGGGCCATCAGAAAAAGGACTACTTTGGGGATCCAGGAGACCCGCTTGTAGGATT--TAGAGGCACCGTGCAAGACAG-AGGTCATGG-TATGCGGGCGCCTCCA------GGCTGCGTGGTGGATCTGGACACTTGGTGAAGGTCAGAGTGACCTTGATCTGCTCTGGGGAGGGA------TGCTGTTTTGCCTTTCTTCACGCACGTGGAAT----CAGGACTAGCTGGACCGGCAGGAAAG----GGCTCTCTCTGGAATAATGGTTTACTTCTCTGCAGGCTTGTGCGGCGGCTCGTGCGGAGCCCTGTGAGCACTC-------------------------------------------------------------ATTCTTGGGAGAGCCCCTGAAGCGGCCTCCGAGTTTAGTCATTTCCTACTTT--TTCCTATTCA--CCTTCCGTAT---CAACATGCTTTTTGG---CCTTCCTCACCTGAATACAGCTGATACCCTAAGAATTCTTACCTTTC-TTTTCCCAAAGTGGCCAGGAACTGAAAAT----CCAACTTCATTAAACTGGAAAGACTGGCTCTTTGCTAATTAGTCCATTTGAAATGAAACTGAAACCCAGGCTAGGATTCTTGGTTCACCTCCCAGATCACAGGAATGTATTGCCTCATTAACAGTTGAAGAAGCAGTTTCAAATGCTCCCAGAACAAGCTGACCACTTGG---------ATTCTTGGGTAGTCGGCTGGGCCTCCTGTCTTTCTGCAGGTTTGTGACTTACCTTTGCTTCCATGGGGG--C---CCATGGGAAGAAAGGAGGTGGGAAATCAGGTACAAAGAGAAAATTG--------GAGTGAGTGGGCATTTTGGTTTATCGAG---TAGAAGCAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16741391 846 - 229590362 AAGAAGTACCATCCCCTGTTCTCAGAAAGCAGAGAGAGGAAGGAGACAGG--AGTGCATAGAGTGAGTGGACCATCAGAAAAAGGACTGCTGCGGGGATGCAAGAGACCTGCTTGTAGGAGT--TAGGGGCACGGTGCAAGACAG--GGTGATGG-TATGC-GGTGCCTCCGACTGGCGGCTGCGTGGTGGGTCTGGCCACTCTGTGAAGGTCGCAGTGACCTTGATCTGCTCTGGGGAGGGA------TGCGGTTTTGCCTTTCTTCACACACGTGGAAT----CAGGACTAGACGGACTGGCAGGAAAA----GGTTCTCTCTGGAATAATGGTTTGCTTCTCTGCAGGTTCGTGCGGCGGC--------AGCCCTGTGAGCACTC-------------------------------------------------------------ATTCTTGGGAGGGCCCCTGAAGCGTCCTCCGCGTTTAGTCCTTTCCCACGTT--TTCCTATTCA--CCTTCCGTAG---CAACATGCTTTTTGG---CCTTCCTCACCTGAATACAGCCGATACCCTGTGAATTCTTATCTTTTATTTTCCCAAAGTGGCCGGGAACTGGAAAT----CCAACTTCATTAAACTGGAAAGACTGGCGCTTTGCTACTTAGTCCATTTGAAATGAAACTAAAACCCAGGCTAGGATTTTTGGTTCACCTCCCAGATCACAGGAATTTATTGCCTCATTAACAGTTGAAGATGCAGTTTTAAATGATCCAAGAACACGCTGACCACTTGG---------ATTCCTGGGCAGTCGGCTGGGCCTCCTGCCTTTCAGCAGGTTGGTGACTTACCTTTGCTTCCATGGGGG--C---CCATGGGAAGAAAGGAGGCAGGAAATGAGGTACAAAGGGAAAATTG--------GACTGAGTGGGTATTTTGGTTTATCAAG---TGGAAGTAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223504214 846 - 227556264 AAGAAGCACCATCCCCTGTTCTCAGAAAGAAGAGAGAGGAAGGAGACAGG--AGTGCATAGAGTGAGTGGACCATCAGAAAAAGGACTGCTGCGGGGATGCAAGAGACCTGCTTGTAGGAGT--TAGGGGCACGGTGCAAGACAG--GGTGATGG-TATGC-GGTGCCTCCGGCTGGCGGCTGCGTGGTGGATCTGGCCACTCTGTGAAGGTCGCAGTGACCTTGATCTGCTCTGGGGAGGGA------TGCGGTTTTGCCTTTCTTCACACACGTGGAAT----CAGGACTAGACGGACTGGCAGGAAAA----GGTTCTCTCTGGAATAATGGTTTGCTTCTCTGCAGGTCCGTGCGGCGGC--------AGCCCTGTGAGCACTC-------------------------------------------------------------ATTCTTGGGAGGGCCCCTGAAGCGTCCTCCGCGTTTAGTCCTTTCCCACGTT--TTCCTATTCA--CCTTCCGTAG---CAACATGCTTTTTGG---CCTTCCTCACCTGAATACAGCCGATACCCTGTGAATTCTTATCTTTTATTTTCCCAAAGTGGCCAGGAACTGGAAAT----CCAACTTCATTAAACTGGAAAGACTGGCGCTTCGCTACTTAGTCCATTTGAAATGAAACTAAAACCCAGGCTAGGATTTTTGGTTCACCTCCCAGATCACAGGAATTTATTGCCTCATTAACAGTTGAAGACGCAGTTTTAAATGATCCAAGAACACGCTGACCACTTGG---------ATTCCTGGGCAGTCGGCTGGGCCTCCTGCCTTTCAGCAGGTTGGTGACTTACCTTTGCTTCCATGGGGG--C---CCATGGGAAGAAAGGAGGCAGGAAATGAGGTACAAAGGGAAAATTG--------GACTGAGTGGGCATTTTGGTTTATCAAG---TAGAAGTAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16554010 849 - 220367699 AAGAAGCACCATCCCCTGTCctcagaaagaagagagaggaaggagacagg--agTGCATGGAGTGAGTGGACCATCAGAAAAAGGACTGCCGCGGGGATGCAAGAGACCTGCTTGTAGGAGTTATAGGGGCACCATGCAAGACAG--GGTGATGG-TATGCGGGTGCCTCCGACTGGCGGCTGCGTGGTGGATCTGGCCACTCTGTGAAGGTCGCAGTGACCTTGATCTGCTCTGGGGAGGGT------TGCGGTTTTGCCTTTCTTCACACACGTGGAAT----CAGGACTAGACGGACTGGCAGGAAAA----GGTTCTCTCTGGAATAATGGTTTGCTTCTCTGCAGGTTCGTGCGGCGGC--------AGCCCTGTGAGCACTC-------------------------------------------------------------ATTCTTGGGAGGGCCCCTGAAGCGTCCTCCGCCTTTAGTCCTTTCCCACGTT--TTCCTATTCA--CCTTCCGTAG---CAACATGCTTTTTGG---CCTTCCTCACCTGAATACAGCCGATACCCTGTGaattcttatcttttattttcccaaagtgGCCAGGAACTGGAAAT----CCAACTTCATTAAACTGGAAAGACTGGCGCTTTGCTACTTAGTCCGTTTGAAATGAAACTAAAACCCAGGCTAGGATTTTTGGTTCACCTCCCAGATCACAGGAATTTATTGCCTCATTAACAGCTGAAGACGCAGGTTTAAATGATCCAAGAACACGCTGACCACTTGG---------ATTCCCGGGTAGTCGGCTGGGCCTCCTGTCTTTCAGCAGGTTGGTGACTTACCTTTGCTTCCATGGGGG--C---CCATGGGAAGAAAGGAGGCAGGAAATGAGGTACAAAGGGAAAATTG--------GACTGAGTGGGCATTTTGGTTTATCAAG---TAGAAGTAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82353326 847 + 85787240 AAGAAGCACCATCCACTGTTGTCAGAAAGAAGAGAGAGGAAGGAGACAGG--AGTGCATAGAGTGAGCGGACCATCAGAAAAAGGACTGCTGCGGGGATGCAAGAGACCTGCTTGTAGGAGT--TAGGGGCACCGTGCAAGATGG--GGTGATGG-TATGCGGGTGCCTCCGACTGGCGGCTGCGTGGTGGATCTGGCCACTCTGTGAAGGTCGCAGTGACCTTGATCTGCTCTGGGGAGGGA------TGCGGTTTTGCCTTTCTTCACACATGTGGAAT----CAGGACTAGACGGACTGGCAGGAAAA----GGTTCTCTCTGGAATAATGGTTTGCTTTTCTGCAGGTTCGTGCAGCGGC--------AGCCCTGTGAGCACTC-------------------------------------------------------------ATTCTTGGGAGGGCCCCTGAAGCGTCCTCCGGGTTTAGTCCTTTCCCACGTT--TTCCTATTCA--CCTTCCGTAG---CAACATGCTTTTTGG---CCTTCCTCACCTGAATACGGAAGATACCCTGTGAATTCTTATCTTTTATTTTCCCAAAGTGGCCAGGAACTGAAAAT----CCAACTTCATTAAACTGGAAAGACTGGCGCTTTGCTACTTAGTCCATTTGAAATGAAACTGAAACCCAGGCTAGGATTTTTGGTTCACCTCCCAGATCACAGGAATTTATTGCCTCATTAACAGTTGAAGAAGCAGGTTTAAATGATCCAAGAACACGCTGACCACTTGG---------ATTCCTGGGTAGTCGGCTGGGCCTCCTGTCTTTCAGCAGGTTGGTGACTTACCTTTGCTTCCATGGGGG--C---CCATGAGAAGAAAGGAGGCAGGAAATGAGGTACAAAGGGAAAATTG--------GACTAAGTGGGCATTTTGGTTTATCAAG---TAGAAGTAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14023270 902 - 49578535 aagaaGCACCATCCGCTGTTCTCAGAAAGAAGAGAGAGGAAGGAGACAGG--AGTGCACAGAGTGAGTGGGCCGTTAGAGAAAGGACTGCACCAGGGATGAAAGAGACCCGCTTGTAGGGTT--TAGGGGCATCATGCTGGACGG-GGGTCGTGG-TGTGTGCGTGCCTCCAACTCGCTGCTGCATGATGGGTCTGGCCACTTGGTGAAGGGTGAAGTGACCTTGGTCTGCTCTGGGAAGCCA------TGCTGTTTTGCCTTTCTTCACACACGTGGAAT----GACGACCAGATGGACTGGCAGGAAAA----GGTTCTCTCGGGAATAATGACTCGCTTCTCTGTAAGCACATG-GGCGGC--------AGCTCTGTGAGCACTCTTGGGAGANNNNNNNNNNATGACTCGCTTCTCTGTAAGCACATGGGCGGCAGCTCTGTGAGACTATTGGGAGAGCCTCTAAAGCGTCCT-GGGGTTTAGGTATTTCCTGCTTT--TTCGTATTCA--CC-TCCGATT---CACCATGC-CTTTAG---CCTTCCTCACCTGAACACAGCTGATGCCCTATGACTTCTTACCTTTTCTTTCCCCAAAGTGGCCAGAGACTGAAAAT----CCACCTTTGTTAAACTGGAAAGCCTGGTGCTTTGCTAATTAGTCCATTTGAAATGAAACTGAAACCCGGGCTGGGATTTTTGGTTCACCTCCCAGATCACAGGAATTTATTGCCTTCTTAACAGTTGAATAAGCAATTTTCAGTGATCCAAGAACAAGTAGACCACTTGG---------ATTCCTGGGTAGGCTGCTAG---TCCTGTCTCTTTGCAGGTTTGTGACTTACCTTTGCTTCCATGGGGG--C---CCGTGGGAAGAAAGGAGGCAGGAAATGAGGTGCAAAGGGAAAATTG--------GAGTGAGTGGGCATTGCGGTTTATCAAG---TAGAAGTAAT i calJac3.chr19 I 302 C 0 s mm10.chr1 178653779 782 + 195471971 -AGGTCATGCATCTACCATTCTCAAAATTAGGAGAGAGGAAAGAGACAGG--CTTGCCTA----------------------------------GGGACCAAAGACATGCGTGTGTAATATC--TAGGGATACACAGCAGG-CAT-TGATCATGGCTATTTGTGTGCCTT------ACTGTTTCATGGCAGATATGGCCTCATTGTGAACACCACCATATTATTGGCTTGCTCTGGGAAGAC-------TATGTTCTTGCCTG--CTCACAAATGGGCACT----CATGACCAGAGGCACTGGATGGGGAAATGTAGCTCTCTCTG-----------------------------TACAGTGG---------AGTTTTGTGGGGGCTA-------------------------------------------------------------CTTCTTGGG---GTCTCTGGTGC-TCCTCTGAGTTGAGTCATTTCTTCTTCT--GTTCTCACCA--CCTTCC--AG---CACTCAGTACTTTGGTTCTTTTTTTCTCTGAAACACTGCTGATAGCCTACAAGTGCTTATATTTTCTTTCTCCCAAGAGCTCAGGGACTGCAAAT----TCAGCTTCATT-GACCAGGAAGAC-ACCACTTTGTTAATTAGTCTGCTTTAAGCGAATCTGGAACCCAGGCTAGGATTCTT-GTTTACTTCCCAGATCACAGGGATTTATAGCTTCATTAACAGTTGAACACACAGTTTTAAAGCATCCGAGCGCAAGCTGATCACTTTGAACACCCCCATCCTCCAGCAGTCTGTTAGGCCCCCTGCCTTCTGGCTGGTTTGTCCCTTACC--TGTTTCCCTGGGGGACA---CCATGGGGAGGAAAGAGGCAGGAAAGGAGAAAC--AGAGAAAATTGGCATGAGTGAGTGAGTGGGCATCCTGGCTTATTAAA---TAGAA----- i mm10.chr1 C 0 C 0 s canFam3.chr7 36227525 798 + 80974532 AAGAAGATACATCCACTGTCCCCCAGAAGAAGAGAGGGGAAGGAGACAGGGTAGGTCGTGGAAAGAAGTGACCATT----------------------------AGGTCAGTGTGTAGTACT--TAGGGGCAT-GTGGCAGACAGCGAGTCCCAGCTGTCTGTGTGCGATTCAGTGGCTGCCCAACGGTTGGTCTGGCCCCCTGGTCCTGGT-------GCCTTGATCTGCTCCCGGCAGGCAGTGAAGTGCTGTGTCTCCTTTCTCCGTGAATGCAGAATCCTCCATGACTG-------TGGCAGGGGAA----TGTTCTCCAGGTAGTAACGATCTGCTTCTCTGTGGGTTCTGGCAGTGAC--------------------CCTA-------------------------------------------------------------GGGCTCGGGAGAGTGCTCGAAGAGACCTTGCAGTTTAGTCCTTTCCTGTTTTTGTTCTTATTTG--CCTTCTGGATGGACAGCGTGCCTTATAG---CCTTCTTCACC-GAATGCTGTGGATGCCCTGCGAGTTCTTATCCTTTCTCTCCCCTAAATGCTCAGGGGCCACACACCCAGCCAGCTTCATCAACCTGGAAGGACTGGCACCTGGCCGAGTAGTCTGTTTTACATGAAACTGAAACCCAGGCTAGGATTTTTGGGTCACCTCCCAGATCACAGGAATTTATTGCCTCATTAACAGTCAAATAAGCA-TTTTAAATGATCCAAGAACAGGCTGACCACTTGG---------AATCCCAGGTAGTCTGCTAGGCCTCCTGTCTTT-AGTGGGTGTGTGACTTACTTTTGCTCCCAAAGGGG--CCCACCATGGGAAGAAACAAGGCAG-----------------GAAAATT---------GAGTGCATGGGCATTCTGGCTTATCAAGAAATAGAGGG--- i canFam3.chr7 C 0 C 0 a score=145750.000000 s hg38.chr1_KI270759v1_alt 31396 47 + 425601 TCTGTGTGTATGTTTGGGAGGAT--GTGGAGAGCA--TTTAGAAGTtt----tat s panTro4.chr1 224771709 47 + 228333871 TCTGTGTGTATGTTTGGGAGGAT--GTGGAGAGCA--TTTAGAAGTtt----tat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226136501 47 - 229942017 TCTGTGTGTATGTTTGGGAGGAT--GTGGAGAGCA--TTTAGAAGTtt----tat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140025969 47 - 143122389 TCTGTGTGAATGTTTGGGAGGAT--GTGGAGAGCA--TTTAGAAATtt----tat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16742237 51 - 229590362 CCTGTGTGTATGTTTGGGAGGAT--GTGGAGAGCA--TTTAGAAGTTTtatctat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223505060 47 - 227556264 CCTGTGTGTATGTTTGGGAGGAT--GTGGAGAGCA--TTTAGAAGTTT----tat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16554859 47 - 220367699 CCTGTGTGTATGTTTGGGAGGAT--GTGGAGAGCA--TTTAGAAGTtt----tat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82354173 44 + 85787240 CCTGTGTGTATGTTTGGGAGGAT--GTGGAGAGCA--TTTAGAAGTTT------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14024172 47 - 49578535 TCTGTGTGTGTGTTTGGGAGGAT--GTGGAGGGCA--TTTACAAGTTC----TTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178654561 50 + 195471971 -CTGTGCAGGGGGTAGGGGTGCTTCAGGGAGGGCAGCCTTAGAAGTTT----TGT i mm10.chr1 C 0 I 8 e canFam3.chr7 36228323 0 + 80974532 C a score=544820.000000 s hg38.chr1_KI270759v1_alt 31443 211 + 425601 ttatttatttatttatttatttatttatttatttatctatttatttatttttgagaa--agtcttgccctgtcacccaggctggagtacagtagtgtgatctcggctcactgcaacctctacctcctgggttcaagtgatcctcctgcttcagcctcccaagtagctgggattacaggcacccccaaccatacctggctaatttttgtatttt s panTro4.chr1 224771756 191 + 228333871 ttatttatttatttat--------------------ctatttatttatttttgagaa--agtcttgccctgtcacccaggctggagtacagtagtgtgatctcggctcactgcaacctctacctcctgggttcaagtgatcctcctgcttcagcctcccaagtagctgggattacaggcgctcccaaccatgcctggctaatttttgtatttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226136548 191 - 229942017 ttatttatttatttat--------------------ctatttatttatttttgagaa--agtcttgcctcgtcacccaggctggagtacagtggcgtgatctcagctcactgcaacctctacctcctgggttcaagtgatcctcctgcttcagcctcccaagtagctgggattacaggcacccccaaccatgcctggctaatttttgtatttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140026016 202 - 143122389 ttatttatttatttat--------ttatttatttatttatttatttatttttgagaa--agtcttgccctgtcacccaggctggagtacagtggcgtgatctcggctca-tgcaacttctacctcctgggttcaagtgatcctcctgcttcagcctcccaagtagctgggattacaggcgcccccaaccatgcctggctaatttttgtatttt i nomLeu3.chr5 C 0 M 100 s rheMac3.chr1 16742288 211 - 229590362 ctatctatctatctatctatctatctatctatctatctatctatttatttttgagac--agtcttgccgtgtcacccaggctggagtgcagtggtgtgatctcggttctctgcaacctctacctcctgggttcaagtgatcctcctgcttcagcctcccaagtagctgggattacaggctgccccaaccatgccaggctaatttttgtatttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223505107 211 - 227556264 ctatctatctatctatctatctatctatctatctatctatctatttatttttgagac--agtcttgccctgtcacccaggctggagtgcagtggtgtgatctcggttctctgcaacctctacctcctgggttcaagtgatcctcctgcttcagcctcccaagtagctgggattacaggctgccccaaccatgccaggctaatttttgtatttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16554906 209 - 220367699 c--tctatctatctatctatctatctatctatctatctatctatttatttttgagac--agtcttgccctgtcacccaggctggagtgcagtggtgtgatctcggttctctgcaacctctacctcctgggttcaagtgatcctcctgcttcagcctcccaggtagctgggattacaggctcccccaaccatgccaggctaatttttgtatttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82354217 206 + 85787240 -----tatctatctatctatctatctatctatctatctatttacttatttttgagac--agtcttgccctgtcacccaggctggagtgcagtggcgtgatctcggttctctgcaacctcaacctcctgggttcaagtgatcctcctgcatcagcctcccaagtagctgggattacaggcgcccccaaccatgcccggctaatttttgtatttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14024219 188 - 49578535 CTATC-----ATCTAT--------------------CTATCTGTCTCtttttgagacagagtcatgccctgtcacccaggctggtgtgcagtgacacaatctctgcccgctgcaacctctacctcctgggttcaagtgatcctcttgctttagccttccaagtagctgggattacaggtgcctgccaccatgccttgctaatggttgtatttt i calJac3.chr19 C 0 C 0 e mm10.chr1 178654611 8 + 195471971 I e canFam3.chr7 36228323 0 + 80974532 C a score=10330.000000 s hg38.chr1_KI270759v1_alt 31654 9 + 425601 aagtagggg s panTro4.chr1 224771947 9 + 228333871 aagtagggg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226136739 9 - 229942017 taatagggg i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16742499 9 - 229590362 tagtagcag i rheMac3.chr1 C 0 I 6 s macFas5.chr1 223505318 9 - 227556264 tagtagcag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16555115 9 - 220367699 tagtagcag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82354423 9 + 85787240 tagtagcag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14024407 8 - 49578535 tagtaagg- i calJac3.chr19 C 0 C 0 e mm10.chr1 178654611 8 + 195471971 I e canFam3.chr7 36228323 0 + 80974532 C e nomLeu3.chr5 140026218 100 - 143122389 M a score=-2263.000000 s hg38.chr1_KI270759v1_alt 31663 16 + 425601 tggc------gggggtcggggg s panTro4.chr1 224771956 16 + 228333871 tggc------gggggtgggggg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226136748 22 - 229942017 tggtagttgagggagggggggg i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223505327 6 - 227556264 ----------gaaggt------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16555124 6 - 220367699 ----------gaaggt------ i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82354432 6 + 85787240 ----------ggaggt------ i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14024415 5 - 49578535 ----------ggggg------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178654611 8 + 195471971 I e canFam3.chr7 36228323 0 + 80974532 C e rheMac3.chr1 16742508 6 - 229590362 I e nomLeu3.chr5 140026218 100 - 143122389 M a score=246858.000000 s hg38.chr1_KI270759v1_alt 31679 108 + 425601 ttcaccacattggccaggctggtctcgaactcctgacttcaagtgatccatccacctcggcctcccaaagtgctgggattacatgtgtgagccaccacgcctggccAT s panTro4.chr1 224771972 108 + 228333871 ttcaccacattggccaggctggtctcgaacttctgacttcaagtgatccatccacctcggcctcccaaagtgctgggattacatgtgtgagccaccacgcctggccAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226136770 108 - 229942017 ttcaccacattggccagactggtctcgaactcctgacttcaagtgatccatccacctcggcctcccaaagtcctgggattacatgtgtgagccaccacgctcggccAT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16742514 108 - 229590362 ttcaccatgttgaccaggctggtctcgaactcctgacttcaagtgatccatccacctcagcctcacaaagtgctgggatttcacgtgtgagccaccatgctcggccAT i rheMac3.chr1 I 6 C 0 s macFas5.chr1 223505333 108 - 227556264 ttcaccatgttgaccaggctggtctcgaactcctgacttcaagtgatccatccacctcagcctcacaaagtgctgggatttcacgtgtgagccaccatgctcggccAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16555130 108 - 220367699 ttcaccatgttgaccaggctggtctcgaactcctgacttcaagtgatccatccacctcagcctcacaaagtgctgggatttcacgtgtgagccaccatgctcggccat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82354438 108 + 85787240 ttcaccatgttgaccaggctggtctcaaactcctgacttcaagtgatccatccacctcaacctcccaaagtgctgggatttcatgtgtgagccaccacactcggccAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14024420 108 - 49578535 ttgactattctgggcaggctggtctcagactcttgactttaagtgatctgcccactttggcctcccaaagtgctggaattacacgtgtgagccaccatgctcagccAT i calJac3.chr19 C 0 C 0 e mm10.chr1 178654611 8 + 195471971 I e canFam3.chr7 36228323 0 + 80974532 C e nomLeu3.chr5 140026218 100 - 143122389 M a score=135501.000000 s hg38.chr1_KI270759v1_alt 31787 83 + 425601 TCATTTAGCCTGGTGACCTAGAAGTACTTAGGAA-----Atgtg----------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCACC--------------------CGTGTA s panTro4.chr1 224772080 93 + 228333871 TCATTTAGCCTGGTGACCTAGAAGTACTTAGGAA-----gtgtgcgtgtgtgtatgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgcgtg--------------------cgcgca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226136878 103 - 229942017 TCATTTAGCCTGGTGACCTAGAAGTACTTAGGAA-----gtgtg----------tgtgtgtttgtgtgtgtgtgtgtgtctgtgtgCGCGCGCCCTCGCGCGCACGCACGCACGCATA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16742622 81 - 229590362 TCATTTAGGCTGGTGACCTTGAAGTACTTAAGAA-----gtg------------tatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--------------------tatgta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223505441 75 - 227556264 TCATTTAGCCTGGTGACCTTGAAGTACTTAAGAA-----------------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--------------------tATGTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16555238 65 - 220367699 tCATTTAGCCTGGTGACCTTGAAGTACttaagaa---------------------------------gtgtgtgtgtgtgtgtgtgtgtatg--------------------tatgta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82354546 55 + 85787240 TCATTTAGCCTGGTAACCTAGAAGTACTTAAGAA-------------------------------------------gtgtgtgtgtgtgtg--------------------tgtgga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14024528 59 - 49578535 TTGTTTAGCCTGGTAACCTAGAAGTACTTAGGGG---------------------------------GTGTGTGTGTGTGCGCGTGCGCGTG-------------------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178654619 88 + 195471971 TCATTTAACCTGGTGACCTAGAAGTACTTAGGAAGAGGAgtgtg----------tgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtc--------------------tgtgtg i mm10.chr1 I 8 C 0 e canFam3.chr7 36228323 0 + 80974532 C e nomLeu3.chr5 140026218 100 - 143122389 M a score=56380.000000 s hg38.chr1_KI270759v1_alt 31870 23 + 425601 TGAGTATATGTGTTTTGGTTTTC s panTro4.chr1 224772173 23 + 228333871 tgagtatatgtgttttggttttc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226136981 23 - 229942017 TGAGTATATGTGTTTTGGTTTTC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16742703 23 - 229590362 tgagtgtatgtgtTTTGGTTTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223505516 23 - 227556264 TGAGTGTATGTGTTTTGGTTTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16555303 23 - 220367699 tgagtgtatgtgtTTTGGTTTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82354601 23 + 85787240 tgagtgtatgtgtTTTGGTTTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14024587 9 - 49578535 --------------TCGGTTTTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178654707 23 + 195471971 tctgtgtgtgtgtctgtgtgtTC i mm10.chr1 C 0 I 625 s canFam3.chr7 36228323 22 + 80974532 TGAGTGTGTGTGTGTGTGTTTC- i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140026218 100 - 143122389 M a score=310968.000000 s hg38.chr1_KI270759v1_alt 31893 127 + 425601 CAATCtttggttcacgaatgtagtccatattcttagaac--tgactcacatataggaattcaataaatatttattgaattaataaatAAATGACTATGGTGTGTGTGTTTATAGGTG------ca------------------------cacacaaaca s panTro4.chr1 224772196 127 + 228333871 cAATCtttggttcatgaatgtaatccatattcttagaac--tgactcacatataggaattcaataaatatttattgaattaataaatAAATGACTATGGTGTGTGTGTTTATAGGTG------CA------------------------CACACAAACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226137004 133 - 229942017 CAATCtttggttcacgaatgtattccatcttcttagaac--tgactcacatataggaattcaataaatatttattgaattaataaatAAATGACTATGGTGTGTGTGTTTATAGGTGcacacaca------------------------cacacacaca i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16742726 127 - 229590362 CAATCtttggttcatgactgtattccaaattcttagaac--tgactcacatataggaattcaataaatatttattaaatgaatagatAAATGACTATGGTGTGTGTGTTTATAGGTG------TG------------------------CACACACACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223505539 127 - 227556264 CAATCtttggttcatgactgtattccaaattcttagaac--tgactcacatataggaattcaataaatatttattaaatgaatagatAAATGACTATGGTGTGTGTGTTTATAGGTG------TG------------------------CACACACACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16555326 127 - 220367699 CAATCTTTGGTTCACGACTGTATTCCAAATTCTTAGAAC--TGACTCACATAtaggaattcaataaatatttattaaatgaatagataaatgactatggtgtgtgtgtttataggtg------tg------------------------cacacacaca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82354624 125 + 85787240 CAATCtttgtttcacgactgtattccaaattcttagaac--tgactcacatataggaattcaataaatatttattaaatgaatagatAAATGACTATGGTGTGTGTGTTTATAGGTG------TG--------------------------CACACACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14024596 122 - 49578535 TAATCTTCGgttcacaaatgtattccaaattcttagaac--tg----acatataggaattcaataaatatttattaaaagaataaatAAATGACTGTGGTATGTGTGTTCATAGATG------CG------------------------AAAACAGAC- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36228345 153 + 80974532 TAATCttttgttcactaatatattctgagtacttaggacagtgattggcacataggaatacaataaatatttgttgagtgattgaaCAAATGAtatgggtgtgtatgtgtgcaagtg------tgcgtgtatgtgtgcatgtTGGGGGGCGTACGTACA i canFam3.chr7 C 0 C 0 e mm10.chr1 178654730 625 + 195471971 I e nomLeu3.chr5 140026218 100 - 143122389 M a score=31098.000000 s hg38.chr1_KI270759v1_alt 32020 20 + 425601 cacacac-aGAGTAACATCTC s panTro4.chr1 224772323 20 + 228333871 CACACAC-AGAGTAACATCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226137137 20 - 229942017 cacacac-aGAGTAACATCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140026320 20 - 143122389 CACACAC-AGAGTAACATCTC i nomLeu3.chr5 M 100 C 0 s rheMac3.chr1 16742853 16 - 229590362 --CACAC--GAGTAACATCT- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223505666 16 - 227556264 --CACAC--GAGTAACATCT- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16555453 16 - 220367699 --cacac--gagtaacATCT- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82354749 16 + 85787240 --CACAC--GAGTAACATCT- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14024718 11 - 49578535 ----------AGTAACGTCTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36228498 21 + 80974532 CACAGACAAGaataacacttc i canFam3.chr7 C 0 C 0 e mm10.chr1 178654730 625 + 195471971 I a score=1742133.000000 s hg38.chr1_KI270759v1_alt 32040 483 + 425601 ACCCATAAGTCATTTATCGAGCAACCATAAGTATTTAAAATAAATGACAAATTAGAA---AGTCCAGAAGACCATGCAGTGGCTGCATAAAGGTGACAAAGCTCATGCTTGTGTTTCTTT----AAAAGAAACTTATCACCCTTCGCAGCCAGGTCTCCTTTAGATAGCGTGCTTGGCC-GGGagcagatcagaaatggcaaactaaagataaagacaatcacaaaggcaaaaccaacaaagcgacagctaacagcttgacaggaagagaggggacagaaagcagacacagagtct-ctaagcacagccgtc----------tggtttggggcaaacaactttttgcactttaccgtgcctgtggaaactatgtcatgcggcatggaatgaaattaattaacattcgtagtagacgctga---------atcatcaaaagcttgaattatatctcataactttgtaggaagatgaagtta-ctc--------tagcaagattccttcaaa-------atggtttact---- s panTro4.chr1 224772343 483 + 228333871 ACCCATAAGTCATTTATCGAGCAACCATAAGTATTTAAAATAAATGACAAATTAGAA---AGTCCAGAAGACCATGCAGTGGCTGCATAAAGGTGACAAAGCTCATGCTTGTGTTTCTTT----AAAAGAAACTTATCACCCTTCGCAGCCAGGTCTCCTTTAGATAGTGTGCTTGGCC-GGGagcagatcagaaatggcaaactaaagataaagacaatcacaaaggcaaaaccaacaaagcgacagctaacagcttgacaggaagagaggggacagaaagcagacacagagtct-ctaagcacagccgtc----------tggtttagggcaaacaactttttgcactttaccgtgcctgtggaaattatgtcatgcggcatggaatgaaattaattaacattcgtagtagacgctga---------atcatcaaaagcttgaattatatctcataactttgtaggaagATGAAGTTA-CTC--------TAGCAAGATTCCTTCAGA-------ATGGTTTACT---- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226137157 491 - 229942017 ACCCATAAGTCATTTATCGAGCAACCATAAGTATTTAAAATAAATGACAAATTAGAA---AGTCCAAAAGACCGTGCAATGGCTGCATAAAGGTGACAAAGCTCATGCTTGTGTTTCTTT----AAGAGAAATTTATCACCCTTCACAGCCAGGTCTCCTTTAGATAGTGTGCTTGGCT-GGGagcagatcagaaatggcaaattaaagataaagacaatcacaaaggcaaaaccaccaaagcgacagctaacagcttgacaggaagagaggggacagaaagcagacacagattct-ccaagtacagtcatc----------tggtttagggcaaacagctttttgcactttactgcgcctgtggaaattatgtcatgcggcatggaatgaaattaattaacattcatagtagacactga---------atcatcaaaagcttgaattatatctcataactttgtaggaagatgaagtta-ctctaattctttagcaagattccttcaga-------atggtttact---- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140026340 491 - 143122389 ACCCATAAGTCATTTATCGAGCAACCGTAAGTATTTAAAATAAATGACAAATTAGAA---AGTCCAGAAGACCATGCAGTGGCTGCACAAAGGTGACAAATCTCATGCTTGTGTTTCTTT----AAGAGAAACTTATCACCCTTCACAGCCAAGTCTCCTTTAGATAGTGTGCTTGGCC-GGGagcagatcagaaatggcaaattaaagataaagacaatcacaaaggcaaaaccaacagaacgacggctaacagcttgacaggaagagaggggacagaaagcagacgcagattct-ctaagtacagccgtc----------tggtttagggcaaacaactttttgcactttactgtgcctgtggaaattatgtcatgcagcatggaatgaaattaattaacattcatagtagacactga---------aacatcaaaagcttgaattatatctcataactttgtaggaagatgaagtta-ctctaattctttagcaagattccttcaga-------atggtttacc---- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16742869 487 - 229590362 ---CATAGGTCATTTATCGAGCAACCATAAGTACTTAAAATAAATGACAAATTAGAA---AGTCCAAAAGACCATGCAGTGGCTGCGTAAAGGTGACAAAGCTCATGCTCGTGTTTCTTT----AAGAGAAACTTATCACCCTTCATAGCCAGGTCTCCTTTAGATAGTGTGCGTGGCC-GGGagcagatcagaaatggcaaattaaagatagcgacaatcacaaaggcaaaaccaacaaagcgacagctaacagcttgacaggaagagaggggacagaaagcagacacagattct-ctaagtacagccgtc-----------ggttcagggcaaacagctttttgcacttcactgtgcctgtggaaattatgtcgtgcggcatggaatgaaattaattaacattcatagtagacactga---------atcatcagaagcttaaattatatctcataactttgtaggaagatgaagtta-ctctaattcttcagcaagattccttcaga-------atggtgtact---- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223505682 487 - 227556264 ---CATAGGTCATTTATCGAGCAACCATAAGTACTTAAAATAAATGACAAATTAGAA---AGTCCAAAAGACCATGCAGTGGCTGCGTAAAGGTGACAAAGCTCATGCTCGTGTTTCTTT----AAGAGAAACTTATCACCCTTCATAGCCAGGTCTCCTTTAGATAGTGTGCGTGGCC-GGGagcagatcagaaatggcaaattaaagatagcgacaatcacaaaggcaaaaccaacaaagcgacagctaacagcttgacaggaagagaggggacagaaagcagacacagattct-ctaagtacagccgtc-----------ggttcagggcaaacagctttttgcacttcactgtgcctgtggaaattatgtcgtgcggcatggaatgaaattaattaacattcatagtagacactga---------atcatcagaagcttaaattatatctcataactttgtaggaagatgaagtta-ctctaattcttcagcaagattccttcaga-------atggtGTACT---- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16555469 487 - 220367699 ---CGTAAGTCATTTATCGAGCAACCATAAGtacttaaaataaatgacaaattagAA---AGTCCAAAAGACCATGCAGTGGCTGCGTAAAGGTGACAAAGCTCATGCTCATGTTTCTTT----AAGAGAAACTTATCACCCTTCACAGCCAGGTCTCCTTTAGATAGTGTGCGTGGCC-GGGAGCAGATCAGAAATGGCAAATTAAAGATAGCGACAATCACAAAGGCAAAACCAACAAAGCGACAGCTAACAGCTTGACAGGAAGAGAGGGGACAGAAAGCAGACACAGATTCT-CTAAGTACAGCCGTC-----------GGTTCAGGGCAAACAGCTTTTTGCACTTCACTGTGCCTGTGGAAATTATGTCGTGCGGCATGGAATGAAATTAATTAACATTCATAGTAGACACTGA---------ATCATCAGAAGCTTAAATTATATCTCATAACTTTGTAGGAAGATGAAGTTA-CTCTAATTCTTCAGCAAGATTCCTTCAGA-------ATGGTGTACT---- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82354765 486 + 85787240 ---CATAAGTCATTT-TCGAGCAACCATAAGTACTTAAAATAAATGACAAATTAGAA---AGTCCAAAAGACCATACAGTGGCTGCATAAAGGTGACAAAGCTCATGCTCGTGTTTCTTT----AAGAGAAACTTATCACCCTTCATAGCCAGGTCTCCTTTAGATAGTGTGCTTGGCC-GGGagcagatcagaaatggcaaattaaagatagcgacaatcacaaaggcaaaaccaacaaagcgacagctaacagcttgacaggaagagaggggacagaaagcagacacagattct-ctaagtacagccgtc-----------ggtttagggcaaacagttttttgcacttcactgtgcctgtggaaattatgtcatgtggcatggaatgaaattaattaacattcatagtagacactga---------atcatcagaagcttaaattatatctcataacttcgtaggaagatgaagtta-ctctaattctttagcaagattccttcaga-------atagtGTACT---- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14024729 494 - 49578535 ACCCATAAGTCATTGATTGAGCAACCATAAGTATGTAAAAT-AGTGACAAATTATTA---AGTCCGAAAGGCCATGCCATGGCTGCAT-AGGGTGACAAA-CTCATGCTCATGTTCCTTT----AAGAGAAACTTATCTTCTTTCTCAGCCAGGTCTCCTTTAGATTCTGTGCTTGGCC--GGAGAGGATCAGAAATGGCTAATCAAAGATAGAGACAATCACAAAGGCGAAACCAACAAAGTGACAGCCAGCAGCTTGACAGGAAGAGAGAGGACAGAAAGCAGACGCAGCTTCT-CTGAGTACAGCCGTC----------GGGTTTAGGGCACACGGCTTTGTGCACCTTACTGTGCCTTTGGAAGTGACGTCATGCGGCGTGGAATGAAAGGGATTAACACTCATAGTGGACACTTATGGACACTTATAAT-AAAAGCTTAAATTATACCTCATAACTT-GCAGGAAGATGAAGTTG-CTCTAATTCTTTTGCAAAATTCCTTCTGA-------ATGCtttact---- i calJac3.chr19 C 0 I 314 s mm10.chr1 178655355 466 + 195471971 gccAATAAACCATTGCTAGATTAACATTTAGTATGCAAAGTATGCAAGGAATTAGAATGTAGTACAGAAATCCATGAAGTAGCTCTGTAAAAATGACAAGTCCCACACTTGCATATTTT-----------GACCCGTCACCATTCTCAGCCTGGTC-ACATTAGGTCTTGTTCTTGTCCCAAAAATATGTCAGAAATGGCATATTAAAGATAGAAACAATCAACCAGAC-AAACCAACAAAGTGGACGTTAACAACTTCATGGGAAGAGCAAAGCCAAAAAGCAGACATGACCCCT-CAGGGGACGGCCATCTGGAGCTGCTTGGTTCAGGAAAAACAGCCATTGGCACTTCACTGTGTCTTTGGAAACTCAGTCACGTGGCACT------------------------GTGAACACTGA---------ATCATCTAAAGCTTAAGTTCTCTTCTATAACTT----GTCAGATGAGGCCA-TAT--------CCGGAAGGTTCC-TCAGACTCTTAGGTGACTCAGT---- i mm10.chr1 I 625 I 3 s canFam3.chr7 36228519 505 + 80974532 acccatgaatcatttatctagcaacct----tatggaaaatgaatgacgaattggaacatggtccat-gggccgtggagaagccacagagaggtaacaaaactcatgctcatatttctttactcacaagagaattattgtccttcatagccaggcctagtttagataatgttcttggcc-tggagcagatcagaaat-gcaaattaaaggtagagataatcacaaagac-aacccaacaaagtgacagctcacagcttgacagcaggagataagacaaaatgcagacctgagtactcctgagtacagccttctggaaccagatggcttaagg-gcacagccttttactctttactgtccccttggacattacgtcatatggcacaatatgaaattaattaacattcataggagacactga---------atcatcaaaagcctaaattatgtcttataattttattagaagacaggatcacctctaattctttagaaagagtcctttgga--------tggtttaagtagc i canFam3.chr7 C 0 C 0 a score=2163817.000000 s hg38.chr1_KI270759v1_alt 32523 626 + 425601 tgtttcttaaagagtacaggcttccattatGTACACcaggaggcagaaaactgt-------ggtcagcagaccaaagccagcctgctgcttgtttttgtaaataaagttttattggaaacaaccatgctcattcatttacgtgtttctgatggcaacttcctccttcccctcagcagaactgagtagttgagacagaaacc-atatggcctgcagagccaaaaatactt----a----atggttat-ttatagcagaagtttgccagtcccCAATCCAGA----------TGTTGGGTTCCTCTTGAATGTTGGTTTGTGCTTATGTATACATCTGATTCACTTGCACGCATTACCAAGTGATCCATATACACGAGTGTGAACACATACGCATTTCTGTGTGGTAG-TAAGCACAACTAAGTGT-GAGCACCACA----------TTCTC---------AGACATAGCTCTAGAAGAGAG-TTTCTAAGAAATTAGCTCTGAGTCTTTTCTGCTTCAGTCAGCTGATGGCATGGAGCAGTATGTTGTAACCTCTGACCCGAAGGGCAAAGGCCTTCTGGAGGAAGTGTACACCCCTCAGAAGCCTCCCTGTACATTCACCATCCCCAAAATAGCTCCTTGAGTAGAGGTGCATCGATCACCCCCAAAGCTTACAT s panTro4.chr1 224772826 626 + 228333871 TGTTTCCTAAAGAGTACAGGCTTCCATTACGTACACcaggaggcagaaaactgt-------ggtcagcaggccaaatccagcctgctgcttgtttttgtaaataaagttttattggaaacaaccatgctcattcatttacatgttgctgatggcaacttcctccttcccctcagcagaactgagtagttgagacagaaccc-atatggcctgcagagccaaaaatactt----a----atggttat-ttatagcagaagtttgccagtcccCAATCCAGA----------TGTTGGGTTCCTCTTGAATGTTGGTTTGTGCTTATGTATACATCTGATTCACTTGCACGCATTACCAAGTGATCCATATACACGAGTGTGAACACATATATATTTCTGTGTGGTAG-TAAGCACAACTAAGTGT-GAGCACCACA----------TTCTC---------AGACATAGCTCTAGAAGAGAG-TTTCTAAGAAATTAGCTGTGAGTCTTTTCTGCTTCAGTCAGCTGATGGCATGGAGCAGTATGTTGTAACCTCTGACCCAAAGGGCAAAGGCCTTCTGGAGGAAGTGTACACCCCTCAGAAGCCTCCCTGTACATTCACCATCCCCAAAATAGCTCCTTGAGTAGAGGCGCATCAATCACCCCCAAAGCTTACAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226137648 617 - 229942017 tgtttcttaaagagtacaggcttccattatATACACcaggaggcagaaaactgt-------ggtcggcaggccaaatccagcctgctgcctctttttgtaaataaagttttattggaaacaaccgtgctcattcatttacacgttgctgatggcaacttcctccttcccctcagcagaactgaatagttgagacggaaacc-atatggcctgcagagccaaaaatactt----a----atggttct-ttatagcaaaagtttgccagtccctgATCTAGA----------TGTTGGGCTCCTCTTGAATGTTGGTTTGTGCTTATGTATACATCTGATTCACTTGCACGCATTACCAAGTGATCCATATACATGAGAGTGAACACATACGCATTTCTGTGTGGTAG-TAAGCACAACTAAGTGT-GAGCACCGCA----------TTCTC---------AGACATAGCTCTAGAAAAGAG-TTTCTAAGAAATTAGCTGTGAGTCTTTTCTGCTTCAGTCAGCTGATGGCATGGAGCAGTATGTTGTAACCTCTGACCCAAAGGGCAAAGGCCTTCTGGAGGAAGTGTACCCCCCCCAGAAGCCTCCCTGT---------ATCCCCAAAATAGCTCCTTGAGTAGAGGTCCATCGATCACCCCCAAAGCTTACAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140026831 623 - 143122389 tgtttcttaaagggtacaggcttccattatATACACcaggaggcagaaaac--t-------ggttggcaggccgtatccagcctgctgcttgtttttgtaaataaagttttattggaaacaaccatgctcattcatttacatgttgctgatggcaacttcctccttcccctcagcagaattgagtagttgagacagaaacc-atatggactgcagagccaaaaatactt----a----atggttct-ttatagcaaaagtttgccagtcccCAATCCAGA----------TGTTGGGTTCCTCTTGAATGTTGGTTTGTGCTTATGTATACATCTGATTCACTTGCACGCATTACCAAGTGGTCCACATATATGAGTGTGAACACATATGCATTTCTGTGTGGTAG-TAAGCACGACTAAGTGT-GAGCACCACA----------TTCTC---------AGACATAGCTGTAGAAGAGAG-TTTCTAAGAAATTAGCTGTGAGTCTTTTCTGCTTCAGTCAGCTGATGGCATGGAGCAGTATGTTGTAACCTCTGACCCAAAGGGCAAAGGCCTTCTAGAGGAAGTGTAC-CCCCTCAGAAGCCTCCCTCGACATTCACCATCCCCAAAATAGCTCCTTGAGTAGAGGCACATTGATCACCCCCAAAGCTTGTAT i nomLeu3.chr5 C 0 I 618 s rheMac3.chr1 16743356 620 - 229590362 tgtttcttaaagagtacaggcttccattatATACACTaggaggcagaaaacggt-------gccctgcaggccacatccagcctgctgcttgtttttataaataaagttttattggaaacaaccatgctcattcatttacatgttgccgatggcaacttcctccttcccctcagcagaattgagta---gagacagaaacc-atatggcctgcagagccaaaaatattt----a----atggttct-ttatagcaaaagtttgccagtccccgATCTAGA----------TGGTGGGTTCTTCTTGTATGTTGGTTTGTACTTATGTATACATGTGATTCACTTGCATGCATTACCAAGTGATCCATATACATGAGTGTGAACACATACGCATTTCTGTGTGGTAG-GAAGCACAACTAAGTGT-GAGCACCACA----------TTCTC---------AGACATAGTTCTAGAACAGAG-TTTCTAAGAAATTAGCTGTGAGTCCTTTCTGCTGCAGTCAGCTGATGGCATGGAGCAGTATGTTGTAACCTCTGACCCAAAGGGCAAAGACTTTCTGG-GGAAATGTAC-CCCCTCAGAGGTCTCCCTGTACATTCACCATCCCC-AAATAGCTCCTTGAGTAGAGGCATATTAATCACACCCAGAGCTTACAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223506169 620 - 227556264 TGTTTCTTAAAGAGTACAGGCTTCCATTATATACACTaggaggcagaaaacggt-------gccctgcaggccacatccagcctgctgcttgtttttataaataaagttttattggaaacaaccatgctcattcatttacatgttgccgatggcaacttcctccttcccctcagcagaattgagta---gagacagaaacc-atatggcctgcagagccaaaaatattt----a----atggttct-ttatagcaaaagtttgccagtccccgATCTAGA----------TGGTGGGTTCCTCTTGTATGTTGGTTTGTACTTATGTATACATGTGATTCACTTGCATGCATTACCAAGTGATCCATATACATGAGTGTGAACACATACGCATTTCTGTGTGGTAG-GAAGCACAACTAAGTGT-GAGCACCACA----------TTCTC---------AGACATAGTTCTAGAACAGAG-TTTCTAAGAAATTAGCTGTGAGTCCTTTCTGCTGCAGTCAGCTGATGGCATGGAGCAGTATGTTGTAACCTCTGACCCAAAGGGCAAAGACTTTCTGG-GGAAATGTAC-CCCCTCAGAGGTCTCCCTGTACATTCACCATCCCC-AAATAGCTCCTTGAGTAGAGGCATATTAATCACACCCAGAGCTTACAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16555956 620 - 220367699 TGTTTCTTAAAGAGTACAGGCTTCCATTATATACACTAGGAGGCAGAAAACTGT-------GCCCTGCAGGCCACATCCAGCCTGCTGcttgtttttacaaataaagttttattggaaacaaccatgctcattcatttacatgttgCCGATGGCaacttcctccttcccctcagcAGAATTGAGTA---GAGACAGAAACC-ATATGGCCTGCAgagccaaaaatattt----a----atggttCT-TTATAGCAAAAGTTTGCCAGTCCCCGATCTAGA----------TGGTGGGTTCCTCTTGTATGTTGGTTTGTACTTATGTATACGTGTGATTCACTTGCATGCATTACCAAGTGATCCATATACATGAGTGTGAACACATACGCATTTCTGTGTGGTAG-GAAGCACAACTAAGTGT-GAGCACCACA----------TTCTC---------AGACATAGTTCTAGAACAGAG-TTTCTAAGAAATTAGCTGTGAGTCCTTTCTGCTGCAGTCAGCTGATGGCATGGAGCAGTATGTTGTAACCTCTGACCCAAAGGGCAAAGACTTTCTGG-GGAAATGTAC-CCCCTCAGAGGTCTCCCTGTACATTCACCATCCCC-AAATAGCTCCTTGAGTAGAGGCATATTAATCACACCCAGAGCTTACAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82355251 620 + 85787240 TGTTTCTTAAAGAGTACAGGCTTCCATTATATACACTaggaggcagaaaactgt-------gccctgcgggccaaagccagcctgctgcttgtttttataaataaagttttattggaaacaaccatgctcattcatttacatgttgccgatggcaacttcctccttcccctcagcagaatcgagta---gagacagaaacc-atatggcctgcagagccaaaaatattt----a----atggttct-ttatagcaaaagtttgccagtccccgATCTAGA----------TGGTGGGTTCCTCTTGTATGTTGGTTTGTACTTATGTATACGTGTGATTCACTTGCATGCATTACCAAGTGATCCATATACATGAGTGTGAACACATACGCATTTCTGTGTGGTAG-GAAGCACAACTAAGTGT-GAGCACCACA----------TTCTC---------AGACATAGCTCTAGAACAGAG-TTTCTAAGAAATTAGCTGTGAGTCCGTTCTGCAGCAGTCAGCTGATGGCATGGAGCAGTATGTTGTAACCTCTGACCCAAAGGGCAAAGACTTTCTGG-GGAAATGTAC-CCCCTCAGAGGTCTCCCTGTACAGTCACCATCCCC-AAATAGCTCCTTGAGTAGAGGCACGTTGTTCACACCCAGAGCTTACAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14025537 625 - 49578535 TGTTTCTTAAAGAGTACATGCTTCCATTATACACACcaggaagcagaaaactgt-------gccctgcaggccaaatccagcctgctgcttgtttttataaataaagttttattgaaaacaaccatgcttactcatgtacgtgttgcctatggcaacttccttctacttctcagcagaattgagtagttgaaacagaaccc---atggcctgcagagccaaaaattttt----a----atggctct-ttatagcaaaagtttgccaacccccgATCCAGA----------TGTTAAGTTCCTGTTGAATGCTGGTTTGTGCTTACGTATGCATCCGATTCACTTTCATGAGTTACCAAGTGATCCGCGTGCGTGAGTGTGAACACGTAGACATTTCTGTGTGGTAGTTAAGCACAACTAGGTGT-GAGCACCGTA----------TTCTC---------AGACATGGCTTTAGAAGAGAG-TTTCTAAGAACTTAGCGGTGAGTCCCTTCTGTCTCCGTCACCTGATGGCATGGAGCAGTCTGTTGTAACCTCTGACCCGAAGCGCAAAGGCCTTCTGGAGGAACTGGAGCCCCCTTGGAAGCCTCCCTGCACATTCACCATTTCCAAAGTAGCTCGCTGAGTACAGGCACACTGAACACACCCAAAGCTTACCC i calJac3.chr19 I 314 C 0 s mm10.chr1 178655824 630 + 195471971 CACTTCTTGAAGA------GCTTCTTTCACACACAGCAGGAGGCAGAGAACAATGTTTGTGGTcctggaggccaaacccagcccacttcttgtctttataaataaagttttattagaagcgactgcacttcctgatttacatattcactgtggcaactttctctttcctgccagctgagtccagtaactaaaacagaaact-atatagccaaccaagc--aaagtttttgttga----ctggtcctataagaactaaagatagccagcTGTTCATGTAGAACGTTTATATAGCTGGACGCCACTTGAGTGTTGGCTTCTACTTCCATGTGCATTTGATTCGTCTGCATGTATGGCCAAGTACTCTGTGTGTACATGTGT------ATACACAGTTCTGTCAGGTAG-TAAACGCAGTTAAGTGCAGGGCATCACA----------TTCCCTCGCTTCTGAAACATAGCTCTGGA--GGAG-TCTGGGCAAAATTAGTTATCATTCTTCT-TGTGTCGCTCTGCTGATGACA-GGGGCAGCGTGTTATAACCTCTGA---------AAAAGACATTCTGGAGGAACTCCGGTTCCCTTGGAGACATCTGTGCACAGGTGCCATCCTG-CAGTCACTTCTTAAGGGTGTCTGTATCGATTGTACCCAAAGCTTACAT i mm10.chr1 I 3 I 6 s canFam3.chr7 36229024 561 + 80974532 tgtttcttaaagagcctatgcttccattatctATACCAGGAAGCAGAAAGTTGT-------GGCCTGCAAGCCAAATCCAGC--------------------------------------------------TCAtcta-----------tagcaactt-ctgtgccatagtagcagagttgagtagttgcagcagagaccaatgtggtgtgcaaaaccaaaggcattt----actgtctggtcct-ttataggaaaagttGACACATCTCCAATCTAGA----------TGTTGGGTTTTTCCTGGGTGTCAGTTTCTGCTTATGTGTACATCTGACTCATTTGCATGCATTCCCAAGTGATCCGTACACATGAGTGTATATACATATAC--TTCTGTGTGCTAG-TAAGCACAATTAAATGTTAAGCACTCTATTGCCTTTACTTCAC---------AAACATAACTCAGTAAAAGGGATTTAGATCTAATTAGCCATTACTC-TTTCCACTTCACTCAACTGATGA----------TATGTGATGACCTCTGACCCAaaggacaaagacattctgg-agaac------tccattggatacctcactgcacatttaccatccttccaacagcttggtgagtatagacatatcgaccaCACCCAAGGTTTCTAT i canFam3.chr7 C 0 C 0 a score=495658.000000 s hg38.chr1_KI270759v1_alt 33149 139 + 425601 AAGAT-----------CCT----------AGCAGTCAGAAGGATTCAGTGATTAGGTATCCCAGACTACATAGGGTCTTGTGGGATATTTCATTGGTACTAGAAGTTGACTGCAATGGCAAGAAA---GGTATGCTTCATAGGGTAGAATTTTGCTTTTAGGG s panTro4.chr1 224773452 139 + 228333871 AAGAT-----------CCT----------AGCAGTCAGAAGGATTCAGTGATTAGGTATCCTAGACTACATAGGGTCTTGTGGGATATTTCACTGGTACTAGAAGTTGACTGCAATGGCAAGAAA---GGTATGCTTCATAGGGTAGAATTTTGCTTTTAGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226138265 139 - 229942017 AAGAT-----------CCT----------AGCAGTCAGAAGGATTTAGTGATCATGTATCCCAGACTACATAGGGTCTTGTGGGATATTTAGCTGGTACTAGAAGTTGACTGCAATGGCAAGAAA---GGTATGCTTCATCGGGTAGAATTTTGCTTTTAGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140028072 139 - 143122389 aaGAT-----------CCT----------AGCAGTCGGAAGGATTCAGTGATTATGTATCCCAGACTACATAGGGTCTTGTGGGATATTTAGCTGGTACTAGAAGTTGACTGCAATGGCAAGAAA---GGTATGCTTCATAGGGTAAAATTTTGCTTTTAGGG i nomLeu3.chr5 I 618 C 0 s rheMac3.chr1 16743976 139 - 229590362 AAGAT-----------CCT----------AGCAGTCGGAAGGATTCAGTGGTTATGTAACCCAGACTACGTAGGGTCTTGTGGGATATTTAACTGGTACTAGAAGTTGACTGCAATGGCAAGAAA---GGTATGCTTCATTGGGTAGAATTTTGCTTTTAGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223506789 139 - 227556264 AAGAT-----------CCT----------AGCAGTCGGAAGGATTCAGTGGTTATGTAACCCAGACTACGTAGGGTCTTGTGGGATATTTAACTGGTACTAGAAGTTGACTGCAATGGCAAGAAA---GGTATGCTTCATTGGGTAGAATTTTGCTTTTAGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16556576 139 - 220367699 AAGAT-----------CCT----------AGCAGTCGGAAGGATTCAGTGGTTATGTAACCCAGACTACGTAGGGTCTTGTGGGGTATTTAACTGGTACTAGAAGTTGACTGCAGTGGCAAGAAA---GGTATGCTTCATTGGGTAGAATTTTGcttttaggg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82355871 139 + 85787240 AAGAT-----------CCT----------AGCAGTCGGAAGGATTCAGTGATTATGTATCCCAGACTACATAGAGTCTTGTGGGATATTTAACTGGTACTAGAAGTTGACTGCAATGGCAAGAAA---GGTCTACTTCATTGGGTAGAATTTTGCTTTTAGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14026162 117 - 49578535 GGGAC-----------CCT----------AGCAGTCTAAAGGATTCAGTGATTCTGTGTCCCAGACTGCAGGGGGCCTTGTGGGATAT----------------------TGAAGTGGTGAGGAA---TGGATGCTTCATCAGGTAGAATTTTGCTTTTAGGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178656460 156 + 195471971 AAGATGGATG-----GCCTTGTGTCTGGAATCAATGTGAAGGATTTGGTGAGCACGTAGCCCAGATTACACGAGGTCCGGTGGGATTTTTAAATGGTCCTGGAAGTTGACTGCGAAGGTGAAAAATATTATTTGCTTTAGCAGATAGAATTTT--TTTCAGGT i mm10.chr1 I 6 I 2 s canFam3.chr7 36229585 153 + 80974532 AGGACTGATGTCTTTGCTG----------TGCTGTGTGAAGGATTCAGTGATCATGTATCCCAGGCTACATGGCATCTTGTGGGATATGAAAATGGTACTGGAAGTCGACTGTAGTGGCAAGAAATATTGTGTGCTTCATCAGGTCGGATTTTGCTTTCAGAT i canFam3.chr7 C 0 C 0 a score=119061.000000 s hg38.chr1_KI270759v1_alt 33288 84 + 425601 tttttttttttttt--------------gagacgtaatctcgctctgt---ccaggttggagtgc--agtagtgctatctcg----gctcactgccacctccgtgtc s panTro4.chr1 224773591 85 + 228333871 tttttttttttttt-------------tgagacgtaatcttgctctgt---ccaggttggagtgc--agtagtgctatctcg----gctcactgcaacctccgtgtc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226138404 93 - 229942017 tttttttttttttt--------ttttttgagacataatctcactctgttgcccaggctggagtgc--agtagtgatatcttg----gctcactgcaacctccgcctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140028211 98 - 143122389 ttttttttttttttttttttttttttttgaaaaataatctcactctgt---ccaggctggagtgc--aataatgcgatcttg----gctcactgcaacgtctgcctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16744115 83 - 229590362 tttttttttt------------------gagacgtaatctcgctctgtcacccagactggagtgc--agtggtgcaatctta----gctcactgcaacctctgcctc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223506928 83 - 227556264 tttttttttt------------------gagacgtaatctcgctctgtcacccagactggagtgc--agtggtgcaatctta----gctcactgcaacctctgcctc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16556715 83 - 220367699 ttttgttttt------------------gagatgtaatctcgctctgtcacccagactggagtgc--agtggtgcaatctta----gctcactgcaacctctgcctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82356010 83 + 85787240 tttttttttt------------------gagacgtaatctcggtctgtcacccagactggagtgc--agtggtgcaatctca----gctcactgcaacctctgcctc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178656618 96 + 195471971 TTTTTGTGGTCTTCTTCATTA-------GCAGAGAAAGCTTCCTCAGC---CAGGGCTACTGTGCTGACTTATTCTATGCTAATGTGGTCAGTGCCACTTC-GTGTC i mm10.chr1 I 2 I 431 s canFam3.chr7 36229738 12 + 80974532 ---TATTCTT------------------GTGGC-------------------------------------------------------------------------- i canFam3.chr7 C 0 C 0 e calJac3.chr19 14026279 0 - 49578535 C a score=6876.000000 s hg38.chr1_KI270759v1_alt 33372 2 + 425601 ct s panTro4.chr1 224773676 2 + 228333871 ct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226138497 2 - 229942017 ct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140028309 2 - 143122389 ct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16744198 2 - 229590362 ct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223507011 2 - 227556264 ct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16556798 2 - 220367699 ct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82356093 2 + 85787240 ct i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36229750 2 + 80974532 CT i canFam3.chr7 C 0 C 0 e mm10.chr1 178656714 431 + 195471971 I e calJac3.chr19 14026279 0 - 49578535 C a score=503071.000000 s hg38.chr1_KI270759v1_alt 33374 215 + 425601 gggttcaagtgattctcctgcctc-agcctcctgagtagctaggattacaggcctgtgccaccacgcctggctaa-tttttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgagctccttacctcgtgatccacctgcctcagcctcccaaagtgctggaattacaggcatgagccaccgcaccc-ggccTTTTAGGC s panTro4.chr1 224773678 215 + 228333871 gggttcaagtgattctcctgcctc-agcctcctgagtagctaggattacaggcctgtgccaccacgcctggctaa-tttttttgtatttttagtagagacgaggtttcaccatgttggtcaggctggtctcgagctccttacctcgtgatccacctgcctcagcctcccaaagtgctggaattacaggcatgagccaccgcacct-ggccTTTTAGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226138499 213 - 229942017 gggttcaagtgattctcctgcctc-agcctcctgagtagctaggattacagacgtgtgccaccacacccagctaa---tttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgagctcctgacctcgtgatccacctgcctcagcctcccaaagtgctggaattacaggcatgagccaccgcgccc-agccTTTTAGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140028311 216 - 143122389 gggttcaagtgattctcctgcctcaagcctccagagtagct-ggaatacaggggggtgccaccacgcctggctaattttttttgtatttttaataaagacggggtttcaccatgttggtcaggctggtctcgaactcctgacctcgtgatccacctgcctcagcctcccaaagtgctggaattacaggcatgagccagcgcgccc-ggccTTTTAGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16744200 216 - 229590362 gggttcaagtgattctcctgcctc-agcctcctgagtagctaggattacaggcgtgtgccaccacgcccggctaa-tttttttgtatttttagtagagatggggtttcatcatgttgggcaggctggtctcaaactcctgacctcatgatccacccgcctcagcctcccaaagtgctggaattacaggcgtgagtcaccgccccctggccTTGTAGGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223507013 216 - 227556264 gggttcaagtgattctcctgcctc-agcctcctgagtagctaggattacaggcgtgtgccaccacgcccggctaa-tttttttgtatttttagtagagatggggtttcatcatgttggtcaggctggtctcaaactcctgacctcatgatccacccgcctcagcctcccaaagtgctggaattacaggcgtgagtcaccgccccctggccTTGTAGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16556800 217 - 220367699 gggttcaagtgattctcctgcctc-agcctcctgagtagctaggattacaggtgtgtgccaccacacccggctaattttttttgtatttttagtagagatggggtttcatcatgttggtcaggctggtctcaaactcctgacctcatgatccacccgcctcagcctgccaaagtgctggaattacaggcgtgagtcaccgcccCCTGGCCTTTTAGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82356095 216 + 85787240 gggttcaagtgattctcctgcctc-agcctcctgagtagctaggattacaggcgtgcgccaccacgcccggctaa-tttttttgtatttttagtagagatggggtttcatcatcttagtcaggctggtctcaaactcctgacctcatgatccacctgcctcagcctcccaaagtgctggaattacaggcgtgagtcaccgccccctggccTTTTAGGC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178656714 431 + 195471971 I e canFam3.chr7 36229752 0 + 80974532 C e calJac3.chr19 14026279 0 - 49578535 C a score=46108.000000 s hg38.chr1_KI270759v1_alt 33589 14 + 425601 TATTCTTGTGGCCT s panTro4.chr1 224773893 14 + 228333871 TATTCTTGTGGCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226138712 14 - 229942017 TATTCTTGTGGCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140028527 14 - 143122389 TATTCTTGTGGCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16744416 14 - 229590362 TATTCTTGTGGCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223507229 14 - 227556264 TATTCTTGTGGCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16557017 14 - 220367699 TATTCTCGTGGCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82356311 14 + 85787240 TATTCTTGTGGCCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14026279 14 - 49578535 TATTCTTGTGGCCC i calJac3.chr19 C 0 C 0 e mm10.chr1 178656714 431 + 195471971 I e canFam3.chr7 36229752 0 + 80974532 C a score=915124.000000 s hg38.chr1_KI270759v1_alt 33603 280 + 425601 TTGTCACTGACTTAATGGATAAAGTTTCTTCTGCTAAGGCGGCCATGTTGGTTTATTATTCTGTACGGATGTGGCTGATACCACATTAGTGTGAGCTTTCACTAGTGCTCACTTTGATAGCCTCCTTGCACAGCCTAGCTAATATATGTCACTGGACTCCATTAATTTTATAGTGTCAGTAGCCCAGAACTCATTAAGGAAGACAAGTTTCTGAGATTGTAGATTCCTATGGGTAAAATATGTA--TATTATCAT-AAAATAGGTACTAAAACGTGATTT-GGA s panTro4.chr1 224773907 280 + 228333871 TTGTCACTGACTTAATGGATAAAGTTTCTTCTGCTAAGGCGGCCATGTTGGTTTATTATTCTGTACGGATGTGGCTGATACCACATTAGTGTGAGCTTTCACTAGTGCTCACTTTGATAGACTCCTTGCACAGCCTAGCTAATATACGTCACTGGACTCCATTAATTTTCTAGTGTCAGTAGCCCAGAACTCATTATGGAAGACAAGTTTCTGAGATTGTAGATTCCTATGGGTAAAATATGTA--TATTATCAT-AAAATAGGTACTAAAACGTGATTT-GGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226138726 280 - 229942017 TTGTCACTGACTTAATGGAGAAAATTTCTTCCGCTAAGGCAGCCATGTTGGTTTATTATTCTGTATGGATGTGGCTGGTACCACATTAGTGTGAGCTTTCACTAGTGCTCACTTTGATAGACTCCTTGCACAGCCTAGCTAATATACGTCACTGGACTCCATTAATTTTGTAGTGTCAGTAGCCCAGAACTCATTATGGAAGACAAGTTTCTGGGATTGTAGACTCCTATGGGTCAAATACGTA--TATTATCAT-AAAATAGGTACTAAAACGTGATTT-GGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140028541 282 - 143122389 TTGTCACTGACTTAATGGAGAAAGTTTCTTCTGCTAAGGCGGCCATGTTGGTTTATTATTCTGTACGGATGTGGCTGATACCACATTAGTGTAAGCTTTCACTAGTGCTCACTTTGATAGACTCCTTGCACAGCCTAGCTAATATACGTCACTGGACTCCGTTAGTTTTCTAGTGTCAGTAGCCCAGAACTCATTATAGAAGACAAGTTTCTGAGATTGTAGACTCCTATGGGTAAAATATGTA--CATTATCATAAAAATAGGTACTAAAATGTGATTTGGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16744430 279 - 229590362 TTGTCACTGACTGAATGGA-AAAGTTTCTTCTGCTAAGGCGGCCGTGCTGGTTTGTTATTCCGTATGGATGTGGCTGATACCACATTAGTGTCAGCTTTCACTAGCGCTCACTCTGACAGACTCCTTGCACAGCCTAGCTCATATACGTCACTGGACTCCGTTCATTTTCTAGCGTCAGCAGCCCAGAACTCATGATGGAAGACAAGTTGCTGAGATTGTAGACTCCTATGGGTAAAATATGTA--TATTATCAT-AAAATAGGTACTAAAATGTGATTT-GGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223507243 279 - 227556264 TTGTCACTGACTGAATGGA-AAAGTTTCTTCTGCTAAGGCGGCCGTGCTGGTTTGTTATTCCGTATGGATGTGGCTGATACCACATTAGTGTCAGCTTTCACTAGCGCTCACTCTGACAGACTCCTTGCACAGCCTAGCTCATATACGTCACTGGACTCCGTTCATTTTCTAGCGTCAGCAGCCCAGAACTCATGATGGAAGACAAGTTGCTGAGATTGTAGACTCCTATGGGTAAAATATGTA--TATTATCAT-AAAATAGGTACTAAAATGTGATTT-GGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16557031 279 - 220367699 TTGTCACCGACTGAATGGA-AAAGTTTCTTCTGCTAAGGCGGCCGTGTTGGTTTATTGTTCCGTATGGATGTGGCTGATACCACATTAGTGTCAGCTTTCACTAGCGCTCACTCTGACAGACTCCTTGCACAGCCTAGCTCATATACGTCACTGGACTCCGTTCATTTTCTAGCGTCAGCAGCCCAGAACTCATGATGGAAGACAAGTTGCTGAGATTGTAGACTCCTATGGGTAAAATATGTA--TATCATCAT-AAAATAGGGACTAAAACGTGATTT-GGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82356325 279 + 85787240 TTGTCACTGACTGAATGGA-AAAATTTCTTCTGCTAAGGCAGCCGTGCTGGTTTACTATTCCGTATGGATGTGGCTGATACCACATTAGTGTCAGCTTTCACTAGCGCTAACTCCGACAGACTTCTTGCACAGCCTAGCTCATATACGTCACTGGACTCCGTTCATTTTCTGGCGTCAGCAGCCCAGAACTCATGATGGAAGACAAGTTTCTGAGATTGTAGACTCCTATGGGTAAAATATGTA--TATCATCAT-AAAATAGGGACTAAAACGTGATTT-GGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14026293 278 - 49578535 TTGTCATTGACTCAATGG--AGAGTTTTTCCAGCTAAGGCAGCCATGTTGGTTTATTATTCTGTACAGACGTGACTGATACCGCATTAGCACGAGATTTCACTAGCGCTCACTTCCATATACTCCTGGAGCAGCCAGGCTCATATACGTCACTGGACTCCGTTAATTTTCAAGTGTCAATAGCCCAAAACTCATGATGGAAAACAAGTTTCTGAGATGATAGACTCCTCTGGGTAAAATACGGA--TATTATCAT-AAAATAGGTACTAAAATGTGATTT-GGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36229752 272 + 80974532 TTGCCACTGTCTTAATGGAGAAAGTCTCTCCAGCT-AGACAGGCATGTTGATTGATTATTCTGTGCTGATGTGGCT-ATACCACATTAGTGATGGTTTTT-------CTGACTTTGATATGCTTCTGGCTCAGGCTAGCTAATATACTTCACTTTATTCTATTACTTTTCAAGTACCAAGGG-CCAAAATTAATTATGGAAGGGAGGCTTCTAAGATTATAGACTCCTATGGGTAAAGTATGTATCTGTACTGCT-AAAATAAGCACTAAGACGTGGTTT-GGA i canFam3.chr7 C 0 C 0 e mm10.chr1 178656714 431 + 195471971 I a score=524573.000000 s hg38.chr1_KI270759v1_alt 33883 162 + 425601 TTTGGGATGTGGAAGTAAGTGCCATTTTAttattgagat---attcatataccat-aaaattga-cgtttta-----aagt------------aatttttagtatagtcacaaaatcatgAATATATATTTTCACCTTGTTT--TAAATAT--AAGAAGATTGGTTCATTT-TGAAGAATT------CTGTGTGA s panTro4.chr1 224774187 162 + 228333871 TTTGGGATGTGGAAGTAAGTGCCATTTTAttattgagat---attcatataccat-aaaattga-tgtttta-----aagt------------aatttttagtatagtcacaaaatcatgaatatatattttcaccttgttt--taaatat--aagaagattggttcatTT-TGAAGAATT------CTATGTGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226139006 159 - 229942017 TTTGGGATGTGGAAGCGAGTGCCATTTTAttattgagat---attcatatacctt-aaaattga-catttta-----aagt------------aatttttagtatagtcacaaaatcatgAATATATATTTTCACCTTGTTT--TAAATAT-----AAGATTGGTTCATTT-TGAAGAATT------CTATGTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140028823 162 - 143122389 TTTGGGATGTGGAAGTAAGTGCCATTTTAttattgagat---attcatataccat-aaaatgga-catttta-----aagt------------aatttttagtatagtcacaaaatcatgAATATATATTTTCACCTTGTTT--TAAATAT--AAGAAGATGGGTTCATTT-TGAAGAATT------CTATGTGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16744709 165 - 229590362 TTTGGGATGGGGAAGTAAGTCCCATTTTAttattgagatatcattcatataccat-aaaattga-cctttta-----aagt------------aatttttagtatagtcacaaaatcatgAATATATATTTTCACCTTGTTT--TAAATAT--AAGAAGATTGGTTCATTT-TGAAGAATT------CTATGTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223507522 165 - 227556264 TTTGGGATGGGGAAGTAAGTCCCATTTTAttattgagatatcattcatataccat-aaaattga-cctttta-----aagt------------aatttttagtatagtcacaaaatcatgAATATATATTTTCACCTTGTTT--TAAATAT--AAGAAGATTGGTTCATTT-TGAAGAATT------CTATGTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16557310 171 - 220367699 TTTGCGATGGGGAAGTAAGTCCCATTTTATTATTGAGATATCATTCATATACTAT-AAAATTGa-cctttta-----aagt------------aatttttagtatagtcacaaaatcatgaatatatgttttcaccttgttt--taaatat--aagaagATTGGTTCATTT-TGAAGAATTGAACCCATATCAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82356604 165 + 85787240 TTTGGGATGGGGAAGTAAGTCCCATTTTAttattgagatatcattcatataccat-aaaattga-cctttta-----aagt------------aatttttagtatagtcacaaaatcatgAATATATATTTTCACCGTGTTT--TAAATAT--AAGAAGATTGGTTCATTT-TGAAGAATT------CTATGTAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14026571 167 - 49578535 TTTGGGATGGGGAAGTAACTACCATTTTAttgctgagatgccattcatataccat-aaaattca-ctgttta-----aatt------------agtttttagtatatttacaaaatcatgAATAGGTATTTTCACCTTTTTTTCTGAATAT--AAGAAGATTGGTTCATTT-TGGAGAATT------CCATGTAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178657145 131 + 195471971 -------------------------------Tttgagatttagttcatatgccacaaaaattgg-cactttgccgctcagt------------agtttttagtaaatttatcaagttgtt----caGTCTTTTTTCTTTTTT--TAAATAA--GAGAAGATTGGTTCAGTT-TGAGGAACT------TTA----- i mm10.chr1 I 431 C 0 s canFam3.chr7 36230024 173 + 80974532 CTTGGGGGGGGGAAGGGAGTGCCTTTTTA--attggtatataattcatataccat-aaaatcaaccctttta-----aagtgtatggttcaagagtttttagtatgtttacaaagttatgcaaccatcTCATC------ttt--taaattttttaaaaattttatttatttattaaaaatt------ttttttaa i canFam3.chr7 C 0 I 205 a score=186020.000000 s hg38.chr1_KI270759v1_alt 34045 73 + 425601 CCCATATCAAAGTAGCTGTTGCAGTTGTGTAGAGATTCACACATGTATGCTCTGTCAAGATTTACCAGTTGGC s panTro4.chr1 224774349 73 + 228333871 CCCATATCAAAGTAGCTGTTGCAGTTGTGCAGAGATTCACACATGTATGCTCTGTCAAGATTTACCAGTTGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226139165 71 - 229942017 CCCATATCAAAGTAGCTGTTACAGTTGTGCAGAGATTCACACATGTATG--CTGTCAAGATTTCCCAGTTGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140028985 73 - 143122389 CCCATATCAATGTAGCTGTTACAGTTGTGCAGAGATTCACACGTGTATGCTCTGTCAAGATTGACCAGTTGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16744874 73 - 229590362 CCCACATCAAAGTAGCTGTTACAGTTGTACAGAGATTCGCATATGTATTCTCTGTCAAGATTTACCAGTTGGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223507687 73 - 227556264 CCCACATCAAAGTAGCTGTTACAGTTGTACAGAGATTCACATATGTATTCTCTGTCAAGATTTACCAGTTGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16557481 73 - 220367699 CCCATATCAAAGTAGCTGTTACAGCTGTACAGAGATTCACATATGTATTCGCTGTCAAGATTTACCAGTTGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82356769 73 + 85787240 CCCACATCAAAGTAGCTGTTACAGTTGTACAGAGATTCACATATGTGTTCTCTGTCCAGATTTACCGGTTGGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14026738 73 - 49578535 CTCGTGCCAAAGTAGCCATTCCAGTTGCCCAGAAACTCACATGTCTACGCTCTGTCACGATTCGGCAGCTCGC i calJac3.chr19 C 0 I 867 s mm10.chr1 178657276 21 + 195471971 ----------------------------------------------------TGTTGACATTTGCTAGATGGT i mm10.chr1 C 0 C 0 e canFam3.chr7 36230197 205 + 80974532 I a score=587612.000000 s hg38.chr1_KI270759v1_alt 34118 232 + 425601 ATGTGTGCCATAGGATTTACTGAGTGTGGATTATGACAGTCCTAGGTCCCTTGATTTTATTTTATATACATATCAAATTGCTCTTCCCCATTGGGCCGTGTTGGAGAACAccagggcccagggcccaagcctctagcct-accccaggcccaggGGTTTGAACAACCTCCCTACCTTCTGGAAACCCATTTCCCCCCAATACTGGCTGGAAGGTATGAGGAGTCGTCTTTCTT s panTro4.chr1 224774422 232 + 228333871 ATGTGTGCCATAGGATTTACTGAGTGTGGATTATGACAGTCCTAGGTCCCCTGATTTTATTTTATATACATATGGAATTGCTCTTCCCCATTGGGCCGTGTCGGAGAACACCAGGGCCCAGGGCCCAAGCCTCTAGCCT-ACCCCAGGCCCAGGGGTTTGAACAACCTCCCTACCTTCTGGAAACCCATTTCCCCCCAGTACTGGCTGGAAGGTATGAGGAGTCGTCTTTCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226139236 230 - 229942017 ATGTGTGCCATAGGATTTACTGAGTGTGGATTATGACAGTCCTAGGTCCCCTGAGTTTATTTTATAAAC--ATTGAATTGGTCTTCCCCACTGTGCCTTGTCAGAGAACACCAGGGCCCAGGGCCCAAGCCTCTAGCCT-ACCCCAGGCCCAGGGATTTGAACAACCTCCCTACCTTCTGGAAACCCATTCTCCCCCAATACTGGCAGGAAAGTATGAGGAGTCTTCTTTCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140029058 232 - 143122389 ATGTGTGCCACAGGACTTACTGAGTGTGGATTATGACAGTCCTAGGTCCCCTGAGTTTATTTTATATACATATTGAATTGCTCTTCCCCATTGGGCCATGCCAGAGAACACCAGTGCCCAGGGCCCAAGCCTCTAGCCT-TCCCCAGTCCCAGGGGTTTGAACAACCTCCCTACCTTCTGGAAACCCATTTCCCCCCAGTACTGGCTGGAAGGTATGAGGAGTCTTCTTTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16744947 233 - 229590362 ATGTGTGCCACAGGATTTACTGAGTGTGGATTATGACAGTCCTAGGTCCCCTGAGTTTATTTTATATACATATTGAATTGCTCTTCCCCATTGAGCCTTGTTGGAAAACACCAAGGCCCAGGGCCCAAGCCTGTAGCATAACCTCAGGCCCAGGGGTTTGAACAATCTCCCTACCTTCTGGAAACCCATTTCCCCCCAGTACTGGCTGGAGGGTATGAGGAGACTTCTTTCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223507760 233 - 227556264 ATGTGTGCCACAGGATTTACTGAGTGTGGATTATGACAGTCCTAGGTCCCCTGAGTTTATTTTATATACATATTGAATTGCTCTTCCCCATTGAGCCTTGTTGGAAAACACCAAGGCCCAGGGCCCAAGCCTCTAGCATAACCTCAGGCCCAGGGGTTTGAACAATCTCCCTACCTTCTGGAAACCCATTTCCCCCCAGTACTGGCTGGAGGGTATGAGGAGACTTCTTTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16557554 233 - 220367699 ATGTGTGCCACAGGATTTACTGAGTGTGGATTATGACAGTCCTAGGTCCCCtgagtttattttatatacatattgaATTGCTCTTCCCCATTGAGCCTTGTTGGAAAACACCAAGGCCCAGGGCCCAAGCCTCTAGCATAACCTCAGGCCCAGGGGTTTGAACAATCTCCCTACCTTCTGGAAACCCATTTCCCCCCAGTACTGACTGGAGGGTATGAGGAGACTTCTTTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82356842 233 + 85787240 ATGTGTGCCACAGGATTTCCTGAGTGTGGATTATGACAGTCCTAGGTCCCCTGAGTTTATTTTAGATACATATTGAATTGCTCTTCCCCATTGAGCCTTGTTGGAAAACgccaaggcccagggcccaagcctctagcacaaccccaggcccaggGGTTTGAACAATCTCCCTACCTTCTGGAAACCCATTTCCCCCCAGTACTGGCTGGAGGGTATGAGGAGACTTCTTTCTT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178657297 205 + 195471971 ATGTGTGTCA----------------TGGATTATGACAGTCCCA-GTCCTTTGAGTTTATCTGATAT----GTGGAATTGTTTCAGCCCA-TGGGCAGGCTC--AGGATATCAAGACCCAATGCCTAGGCCTCTATCCAGAGCACAGCCTTTGGGGGTGG--CTGGCGTCTCCCCTTCTGGGATTCTCTTT-CCTCCAGT-CTGGCTGTGGGGTGAGAGGAGTCTTCCCTTCT i mm10.chr1 C 0 I 661 e canFam3.chr7 36230197 205 + 80974532 I e calJac3.chr19 14026811 867 - 49578535 I a score=2980430.000000 s hg38.chr1_KI270759v1_alt 34350 1301 + 425601 ACTGTCCTTATCACTACAGGAAACAGGGAAAGCATAAGAAAAATGACAAAATGTTCCAGCTGAGCTAGAGTCTCATTGGAGGGTAcaattgtctctgagtatcagtggaagagtgcctccaggactcctacagaaactaaaatccacaaatgctcaagtccctggtataaaatgtcatggtatttgcgtataacccaggtacgtcctccggtatatctgaaatgatgcctagattacctataatacctaatacaatataaatgctatataaatagttgttattctgtattgtttgaggaataatgacaaggaaaaaaactctgtacgtgttaagtacagacgcaaccatccttttttttttt-tctgaatacttttaatccatggttgtttgaatccataaatgtggaacccacggatacagatggctgaGTATGTACTAACATATAAATAGGGCTAGCCTTGCTTTTCTGCAGCCCCTGTCCCTAACATCTTATTCTAAGTGGCCCTGGGCAAAGTGACCattcatttattcactcattcatttgtaggccctactgagagcctacgatgtatacggcaccatgtaccaggccctgagaacacagaggtaagatagacagggtcctgctttcatcgggtttatattccaatgaagataagaggcattcaacaactctttatctaatgagttgtacagcaacccttgtgatatgtgcacttaaagaaatgtgcaggggttttggatagaaaggctcaatgtggagacagacttggtctggaggcggggcagcttctctgagggtgcgacgtttcagccacgatctaagggagggaacagggaaatgcactgcggtcatccaggtgagaaatgatggtggcctcagtgcccaaagtggggacgtcagtggatgcagacagtggatttgagacgtatttaggagatggaattgacTAGCATCATTTTATTGACACTTTTCATTTCTACAGTTTGAGTCCATCCTCCCATCCTCCTTTCCCAATCCCAGTGCCTCAGATGTTCTCGTTTTTCCCTT-GGGGTGAGTCTATACTGAAGCCAGATGGTTTCACTCAAACCCATTCAGTGCTCCAGAGTCAAGTGCTGGTCATCGCAGGGGAGCTCCGGAGCTGCGTCTGTAATGTTAGTGACCCTGATTTCTAAAGGGAAGTCTTCTTCAGTCTGTTTCTGAGATTATTCCTGGGAG----------CTTTAACTGGAAAAGCCAAGGGCTTAAAAAGATGCAGtt------tttttttttttttttttttttttttttttttttgagacactg s panTro4.chr1 224774654 1284 + 228333871 ACTGTCCTTATCACTACAGGAAACAGGGAAAGCATAAGAAAAATGACAAAATGTTCCAGCTGAGCTAGAGTCTCATTGGAGGGTAcaattgtctctgagtatcagtggaagagtgcctccaggactcctacagaaactaaaatccacaaatgctcaagtccctggtataaaatgtcatggtatttgcgtataacccatgtacatcctccggtatatctgaaatgatgcctagattacctataatacttaatacaatataaatgctatataaatagttgttattttgtattgtttgaggaataatgacaaggaaaaaag-tctgtacgtgttaagtacagacgcaaccatccttttttttctt--ctgaatacttttaatccatggttgtttgaatccataaatgtggaacccacggatacagatggctgaGTATGTACTAACATATAAATAGGGCTAGCCTTGCTTTTCTGCAGCCCCTATCCCTAACATCTTATTCTAAGTGGCCCTGGGCAAAGTGACCATTCATTTattcactcattcatttgtaggcactactgagagcctacgatgtatacggcaccatgcaccaggccctgagaacacagaggtaagatagacagggtcctgctttcatcgggtttatattccaatgaagataagaggcattcaacaactctttatctaatgagttgtacagcaacccttgtgatatgtgcacttaaagaaatgtgcaggggttttggatagaaaggctcaatgtggagacagacttggtctggaggcagggcagcttctctgagggtgcgacgtttcagccacgatctaagggagggaacagggaaatgcattgcggtcatccaggtgagaaatgatggtggcctcagtgcccaaagtggggacgtcagtggatgcagacagtggatttgagacgtatttaggagatggaattgactagcatcattttattgatACTTTTCATTTCTACAGTTTGAGTCCATCCTCCTATCCTCCTTTCCCAATCCTAGTGCCTCAGATGTTCTCATTTTTCCCTT-GGGGTGAGTCTGTACTGAAGCCAGATGGTTTCACTCAAACCCATTCAGTGCTCCAGAGTCAAGTGCTGGTCATCGCAGGGGAGCTCCGGAGCTGCGTCTGTAATGTTAGTGACCCTGATTTCTAAAGGGAAGGCTTCTTCAGTCTGTTTCTGAGATTATTCCTGGGAG----------CTTTAACTGGAAAAGCCAAGGGCTTAAAAAGATGCAGtt------gttttttttttttttttt---------------gagacactg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226139466 1271 - 229942017 ACTGTCCTTATCACTATAGGAAACAGGGAAAGCATAAGAAAAATGACAAAATGTTCCAGCTGAGCTAGAGTCTCATTGGAGGGTAcagttgtccctgagtatcagtggaagagtgcctccaggtctcctacagatactaaaatccacaaatgctcaagtccctggtataaaatgtcatggtatttgcgtataagccatgtacatcctcctgtatatctgaaatgatgtctagattatctataatacctaatgcaatataaatgctatataaatagttgttattttgtattgtttggggaataatgacagggaaaaaag-tctgtacgtgttaagtacagatgtaaccatccttttttttt----ctgaatacttttaatccatggtggtttgaatccataaatgtggaacccacggatgcagatggctgaGTACGTATTAACATATAAATAGGGCTAGCCTTGCTTTTCTGCAGCCCCTATCC-------CTTATTCTAAGTGGCTCTGGGCAAAGAGACCATTCATTTattcactcattcatttgtaggcactactgagagcctacgatgtatacagcaccatgcaccaggccctgagaacacagaggtaagatagacaggatcctgctttcattgggtttatattccaatgaagataagaggcattcaacaactctttatctaatgagttgtacagcaacccttgtgatatgtgcactgaaagaaatgtgcaggggttttggatagaaaggctcaatgtggagccagacttggtctggaggcggggaagcttctctgagggtgcgatgtttcagccacgatctaagggagggaacagggaaatgcattgcagtcatccaggtgagaaatgatggtggcctcaatgcccaaagtggggacgtcagtggatgcagacagtgaatttgagacatatttaggagatggaattgactagcatcattttattgatACTTTTCATTTCTACAGTTTGAGTCCATCCTCCCATCCTCCTTTCCCAGTCCTAGTGCCTCAGATGTTCTCATTTTTCTCTTGGGGGTGAGTCTATACTGAAGCCAGATGGTTTCACTCAAACCCATTCAGTGCTCCAGAGTCAAGTG-TGGTCATCACAGGGGAGCCCTGGAGCTGCATCTGTAATGTTAGTGACCCTGATTTCTAAAGGGAAGTCTTCTTCAGTCTATTTCTGAGATTATTCCTGGGAG----------CTTTAACTGGAAAAGCCAAGGGCTTTAAAAGATGCAGTC------tttttttttttttt-------------------gagacatta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140029290 1279 - 143122389 ACTGTCCTTATCACTACAGGAAACAGGGAAAGCATAAGAAAAATGACAAAATGTTCCAGCTGAGCTAGAGTCTCATTGGAGGGTAcagttgtccctgag--tcagcggaagagtgcctccaggactcctacagatactaaaatccacaaatgctcaagtccctggtctgaaatggcatggtatttgcatataacccatgtacatcctcctgtatgtcggaaatgatgtctagattatctataatacctaatgcaatataaatgctatataaatagttgttattttgtattgtttagggaataatgacaaggaaaaaag-tctgtacgtgttaagtacagatgtaaccatccttttttttttt--ctgaatacttttaatccatggttgtttgaatccataaatgtggaacccacagatacagatggctgaATATGTATTAACATATAAATAGGGCTAGCCTGGCTTTTCTGCAGCCCCTGTCC-------CTTATTCTAAGTGGCCCTGGGCAAAGAGACCATTCATTTattcactcattcatttgtaggcactattgagagcctacgatgtatacggcaccatgcaccaggccctgagaacacagaggtaagatagacaggatcctgctttcatctggtttatattccaatgaagataagagacattcaacaactctttatctaatgagttgtacagcaacccttgtggtatgtgcactgaaagaaatgtgcaggggttttggatagaaaggctcaatgtggagccagacttagtctggaggcagggaagcttctgtgagggtgcgatgtttcagccacgatctaagggagggaacagggaaatgcactgcggtcatccaggtgagaaatgatggtggcctcaatgcccaaagcggggacatcagtggatgcagacagtggatttgagacatatttaggagatggaattggctagcatcattttattgatACTTTTCATTTCTACAGTTCAAGTCCATCCTCCCATCCTCCCTTCCCAATCCTAGTGCCTCAGATGTTCTCATTTTTCTCTT-GGGGTGAGTCTATACTGAAGCCAGATGGTTTCACTCAAACCCATTCAGTACTCCAGAGTCAAGTG-TGGTCATCGCAGGGGAGCTCCAGAGCTGCGTCTGTGATGTTAGTGACCCTGATTTCTAAAGGGAAGTCTTCCTCAGTCTATTTCTGAGATTATTCCTGGGAG----------CTTTAACTGGAAAAGCCAAGGGCTTAAAAAGATGCAGTC------ttttttttttttttttttttttt----------gagacacta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16745180 1264 - 229590362 ACTGTCCTTATCACTACAGGAAACAGGGAAAGCGTAAGAAAAACGAGAAAATGTTCCAGCTGAACTAGAGTCTCACTGGAGGGTATAGT----CCTGAGTATCAGTGGA---------------ctcctacagatactaaaatccaccaatgctcaagtcccaggtataaagttgcatggtatttgcatataacccatgtacatcctcctgtatatcttaaatgatctctagattacctataatacctaatacaatacaaatgctatgtaaatagttgttattttgtattgtttagggaataatgacaaggaaaaag--tctgtacatgttcagtacagatgcaaccatcttttttttttttccctgaatacttttaatccatggttgtttgaaaccataaatgtggaagccacggatacagatggttgaGTATGTATTAACATATAGATAGGGCTAGCCTTGCTTTTCTGTAGCTCCTATCCCTGACATCTTA-TCCAAGTGGCCCTGGGCAAAGTGACCattcatttattcactcattcatttgtaggcgctattgagagcctatgacccatacggcaccatgcaccaggccctgagaacacagaggtaagatagagagggccctgctttcatcgggtttacattccaatgaagataagaggcattcagcaactc--tacgtaatgagttgtacagcaacccttgtgatatgtgtactgaaggaaatgtgcaggggttttggatagaaaggctcaatgtggagccagacttagtctggaggcggggaagcttctctgagggtgcgatgtttcagccacgatctaaggaagggaacagggaaatgcactgcagtcatccaggtgagaaatggtggtggcctcaatgcccaaagtggggacatcagtggatgcagacagtgaa-ttgagacatatttaggagatggaattgactagcatcattttattgatACTTTTCATTTCTACAGTTAGAGTCCATCCTCCCATCCTCCTTTCCCAATCCTAGTGCCTCAGATGTTCTCATTTTTCTCTT-GGGGTGAGTCTATACTGAAGCCAGATGGTTTCACTCAACCCCATTCAGTGCTCCAGAGTCAAGTGCTGGTCCTCACAGGGGAGGTCTGGAGCTGCGTCTGTAATGTTGGTGACCCTGGTTTCTAAAGGGAAGGCTTCTTCAGTCTATTTCTGGGATTATTCCTGGGAG----------CTTTAACTGGAAAAGCCAAGGGCTTAAAAAGATGCAGTC------tttttttttttttttttttt-------------gagacaggg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223507993 1271 - 227556264 ACTGTCCTTATCACTACAGGAAACAGGGAAAGCGTAAGAAAAACGAGAAAATGTTCCAGCTGAACTAGAGTCTCACTGGAGGGTATAGT----CCTGAGTATCAGTGGA---------------ctcctacagatactaaaatccaccaatgctcaagtcccaggtataaagttgcatggtatttgcatataacccatgtacatcctcctgtatatcttaaatgatctctagattacctataatacctaatacaatacaaatgctatgtaaatagttgttattttgtattgtttagggaataatgacaaggaaaaag--tctgtacatgttcagtacagatgcaaccatcttttttttttttccctgaatacttttaatccatggttgtttgaaaccataaatgtggaagccacggatacagatggttgaGTATGTATTAACATATAGATAGGGCTAGCCTTGCTTTTCTGTAGCTCCTATCCCTGACATCTTATTCTAAGTGGCCCTGGGCAAAGTGACCattcatttattcactcattcatttgtaggcgctattgagagcctatgacctatacggcaccatgcaccaggccctgagaacacagaggtaagatagacagggtcctgctttcatcgggtttacattccaatgaagataagaggcattcaacaactc--tacgtaatgagttgtacagcaacccttgtgatatgtgccctgaaagaaatgtgcaggggttttggatagaaaggctcaatgtggagccagacttagtctggaggcggggaagcttctctgagggtgcgatgtttcagccacgatctaaggaagggaacagggaaatgcactgcagtcatccaggtgagaaatggtggtggcctcaatgcccaaagtggggacatcagtggatgcagacagtgaa-ttgagacatatttaggagatggaattgactagcatcattttattgatACTTTTCATTTCTACAGTTAGAGTCCATCCTCCCATCCTCCTTTCCCAATCCTAGTGCCTCAGATGTTCTCATTTTTCTCTT-GGGGTGAGTCTATACTGAAGCCAGATGGTTTCACTCAACCCCATTCAGTGCTCCAGAGTCAAGTGCTGGTCCTCACAGGGGAGCTCTGGAGCTGCGTCTGTAATGTTGGTGACCCTGGTTTCTAAAGGGAAGGCTTCTTCAGTCTATTTCTGGGATTATTCCTGGGAG----------CTTTAACTGGAAAAGCCAAGGGCTTAAAAAGATGCAGTCtttttttttttttttttttttttttt-------------gagacaggg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16557787 1265 - 220367699 ACTGTCCTTATCACTACAGGAAACAGGGAAAGCGTAAGAAAAACGAGAAAATGTTCCAGCTGAACTAGAGTCTCACCGGTGGGTACAGT----CCTGAGTATCAGTGGA---------------CTCCTACAGATACTAAAATCCACCAATGCTCAAGTCCCAGGTATAAAGTTgcatggtatttgcatataacccatgTACATCCTCCTGTATATCTTAAATGATCTCTAGATTacctataatacctaatacaatacaaatgctatgtaaatagttgttattttgtattgtttagggaataatgacaaggaaaaag--tctgtacatgttcagtacagatgcaaccatctttttttttttcccctgaatacTTTTAATCCATGGTTGTTTGAAACCATGAATGTGGAAGCCACGGATACAGATGGTTGAGTATGTATTAACATATAGATAGGGCTAGCCTTGCTTTTCTGTAGCTCCTATCCCTGACATCTTATTCTAAGTGGCCCTGGGCAAAGtgaccattcatttattcactcattcatttgtagGCGCTATTGAGAGCCTATGACCTATACGGCACCATGCACCAGGCCCTGAGAACACAGAGGTAAGATAGACAGGGTCATGCTTTCATCGGGTTTACATTCCAATGAAGATAAGAGGCATTCAACAACTC--TACGTAATGAGTTGTACAGCAACCCTCGTGATACGTGCACTGAAAGAAATGTGCAGGGGTTTTGGATAGAAAGGCTCAATGTGGAGCCAGACTtagtctggaggcagggaagctTCTCTGAGGGTGCAATGTTTCAGCCACGATCTAAGGAAGGGAACCGGGAAGTGCACTGCAGTCATCCAGGTGAGAAATGGTGGTGGCCTCAATGCCCAAAGTGGGGACATCAGTGGATGCAGAAAGTGAA-TTGAGACATATTTGGGAGATGGAATTGACTAGCATCATTTTATTGATACTTTTCATTTCTACAGTTAGAGTCCATCCTCCCATCCTCCTTTCCCAATCCTAGTGCCTCAgatgttctcatttttctctt-ggggTGAGTCTATACTGAAGCCAGATGGTTTCACTCAACCCCATTCAGTGCTCCAGAGTCAAGTGCTTGTCCTCATAGGGGAGCTCTGGAGCTGTGTCTGTAATGTTGGTGACCCTGGTTTCTAAAGGGAAGGCTTCTTCAGTCTATTTCTGGGATTATTCCTGGGAG----------CTTTAACTGGAAAAGCCAAGGGCTTAAAAagatgcagtc------tttttttttttttttttttt-------------gagacaggg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82357075 1274 + 85787240 ACTGTCCTTATCACTACAGGAAACAGGGAAAGCGTAAGAAAAACGAGAAAATGTTCCAGCTGAACTAGAGTCTCACTGGAGGGTACAGT----CCTGAGTATCAGTGGA---------------ctcctacagatactaaaatccaccaatgctcaagtcccaggtataaaatcgcatggtatttgcatataacccatgtacatcctcctgtatatcttaaatgatctctagattacctataatacctaatacagtacaaatgctatgtaaatagttgttattttgtattgtttagggaataatgacaaggaaaaag--tctgtacatgttcagtacagacgcaaccatcttttattttttt-cctgaatacttttaatccatggttgtttgaatccataaatgtggaagccacagatacagatggttgaATATGTATTAACATATAAATAGGGCTAGCCTTGCTTTTCTGTAGCTCCTATCCCTGACATCTTATTCTAAGTGGCCCTGGGCAAAGTGACCattcatttattcactcattcatttgtaggcgctattgagagcctatgacctatacggcaccatgcacgaggccctgagaacacagaggtaagatggacagggtcctgctttcatcgggtttacactccaatgaagataaaaggcattcaacaactc--tatgtaatgagttgtacagcaaccctcgtgatacgtgcactgaaagaaatgtgcaggggttttggatagaaaggctcaatgtggagccagacttagtctggaggcggggaagcttctctgagggtgcgatgtttcagccacgatctaaggaagggaacagggaaatgcactgcagtcatccaggtgagaaatggtggtggcctcaatgcccaaagtggggacatcagtggatgcagaaagtgaa-ttgagacatatttaggagatggaattgactagcatcattttattgatACTTTTCATTTCTACAGTTAGAATCCATCCTCCCATCCTCCTTTCCCAATCCTAGTGCCTCAGATGTTCTCATTTTTCTCTT-GGGGCGAGTCTATACTGAAGCCAGATGGTTTCACTCAACCCCATTCAGTGCTCCAGGGTCAAGTGCTGGTCCTCACAGCGGAGCTCTGGAGCTGCGTCTGTAATGTTAGTGACCCTGGTTTCTAAAGGGAAGGCTTCTTCAGTCTATTTCTGGGATTATTCCTGGAAAATCCAGGAATATTTAACTGGAAAAGCCAAGGGCTTAAAAAGATGCAGTC------tttttttttttttttttttt-------------gagacaggg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178657502 661 + 195471971 I e canFam3.chr7 36230197 205 + 80974532 I e calJac3.chr19 14026811 867 - 49578535 I a score=1166530.000000 s hg38.chr1_KI270759v1_alt 35651 404 + 425601 tcttgctttgtcacccaggctagcctgcagtggcacagt-atggctcaccacagcctcaacctcccagattccagagatcctcccatttcagcctccagagtagctgtggc--------tacagg--cacacaccaccactctcagctaattttttaa-aa-atttttgtagagacaagatctcactaggttgcccgggctggtctcaaactcctgggctcaagtgatcctccccccttggcgtcccaaagtgctgggattccaggagtgagccactgggcccagcACGGTGCAG------------------TCTTCAGAGAAGGTGAACTCTCTGGGCACCTAGAGAAACTTGTAGGGAAACAAAAGCTTGTTTATAAACTTGGTTCAACACAGGAGACT----ATGTTCTCCACATTGAAAAGTTCCTTCATCTTT s panTro4.chr1 224775938 404 + 228333871 tcttgctttgccacccaggctagcctgcagtggcacagt-atggctcaccacagcctcaacctcccagattccagcaatcctcccattttagcctccagagtagctgtggc--------tacagg--cacacaccaccactctcagccaatttttaaa-aa-atttttgtagagacaagatctcactaggttgcccaggctggtgtcaaactcctgggctcaagtgatcctccccccttggcgtcccaaagtgctgggattccaggagtgagccactgggcccagcACGGTGCAG------------------TCTTCAGAGAAGGTGAACTCTCCGGGCACCTAGAGAAACTTGTAGGGAAACAAAACCTTGTTTATAAACTTGATTCAACACAGGAGACT----ATGTTCTCCACATTAAAAAGTTCCTTCATCTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226140737 434 - 229942017 tcttgctttgtcacccaggctggcctgcagtggcacagt-atggctcaccacagcctcaacctcccagattcaagcgatcctccgatttcagcctccagagtagctgtggctacaggcatacagg--cacacaccaccactctcagctaatttttaaa-aa-atttttgtagagacaagatctcactaggttgcccaagctggtctcaaactcttgggctcaagtgatcctccccgcttggcattccaaagtgctgggattccaggagagagccactgggcccagcACGATGCAGTCTTCAGAGAAGATACACTCTTCAGAGAAGGTGAACTCTCTGGGCACCTAGAGAAACTCATAGGGAAACAAAAACTTGTTTATAAACCTGATTCAACATGGGAGACTCCACATTTTCTCCACATTGAAAAGTTCCTTCATCTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140030569 408 - 143122389 tcttgctttgtcacccaggctagcctgcagtggcacagt-atggctcaccacagcctctacctcccagattcaagcgatcctcccatttcagcctccagagtagctgtggc--------tacagg--cacacaccaccactctcagctaatttttaaa-aa-atttttgtagagacaagatctcactaggttgcccaggctggtctcaaactcttgggctcaagtgatcctcccgccttggcatcccgaagtgctgggattccaggagagagcccctgggcccagcACGGTGCAG------------------TCTTCAGAGAAGGTGAACTCTCTGGGCACCCAGAGGAACTCATAGGGAAACAAAAGCTTGGTTATAAACCTGATTCAACATGGGAGACTCCACATTTTCTCCACATTGAAAAGTTCCTTCAACATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16746444 421 - 229590362 tcttgctttgccacccaggctagcgtgcagtggcacagt-atggctcaccacagcctcaacctcccagattcaagtgatcctcccatttcagcctccagagtagctgtggc--------tacagg--cgcacacccccactctcagctaatttttaca-aa-a-ttttgtagagacaagatctcactaggttgcccaggctggtctcaaactcctgagctcaagtgatcctcccctcttggcatcccaaagtgctgagattacaggagtgagccactgggcccagcATGTTGCAGTCTTCAGAGAAGATACAGTCTTCAGAGAAGGTGAACTCTCTGGGTACTTAGAGAAACTCATGGGGAAACAAAAGCTTGTTTATAAACTTGATTCAACACAGGAGACT----GTGTTCGCCACATTGAAAAGTTCCTTCATCTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223509264 421 - 227556264 tcttgctttgccacccaggctagcgtgcagtggcacagt-atggctcaccacagcctcaacctcccagattcaagtgatcctcccatttcagcctccagagtagctgtggc--------tacagg--cgcacaccaccactctcagctaatttttaca-aa-a-ttttgtagagacaagatctcactaggttgcccaggctggtctcaaactcctgagctcaagtgatcctcccctcttggcatcccaaagtgctgagattacaggagtgagccactgggcccagcATGTTGCAGTCTTCAGAGAAGATACAGTCTTCAGAGAAGGTGAACTCTCTGGGTACTTAGAGAAACTCATGGGGAAACAAAAGCTTGTTTATAAACTTGATTCAACACAGGAGACT----GTGTTCGCCACATTGAAAAGTTCCTTCATCTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16559052 419 - 220367699 tcttgctttgccacccaggctagcgtgcagtggcacagt-atggctcaccacagcctcaacctcccagattcaagtgatcctcccatttcagcctccagagtagctgtggc--------tacagg--cgcacaccaccactctcagctaatttttaca-aa-a-ttttgtagagacaagatctcactaggttgcccaggctggtctcaaactcctgagctcaagtgatcctcccctcttggcatcccaaagtgctgagattacaggagtgagccactgggcccagcatGTTGCAGTCTTCAGAGAAGATACAGTCTTCAGAGAAGGTGAACTCTCTGGGTACTTAGAGAAACTCATGGGGAAACAAAAGCTTGTTTATAAACTTGATTCAACACAGGAGACT----GTGTTCGCCACATTGAAAAGTTCCT--ATCTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82358349 404 + 85787240 tcttgctttgccacccaggctagcgtgcagtggcacagt-atggctcaccacagcctcaacctcccagattcaagtgatcctcccatttcagcctccagagtagctgtggc--------cacagg--cgcacaccaccactctcagctaatttttaaacaa-a-ttttgtagagacaagatctcactaggttgcccaggctggtctcaaactcctgagctcaagtgatcctcccctcttgacatcccaaagtgctgagattacaggagtgagccactgggccccgcACGGTG------------------CAGTCTTCAGAGAAGGTGAACTCTCTGGGTACTTAGAGAAACTCATGGGGAAACAAAAGCTTGTTTATAAACTTGATTCAACACAGGAGACT----GTGTTCGCCACATTGAAAAGTCCCTTCATCTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14027678 406 - 49578535 tctcgctttgtcacccaggctagtgtgcagcggcgtggtcatggctcaccacagccttaacttcccag-tgcaagcaatcctcccatttcagcctccagagtagctgtgac--------tacaggcacacacaccaccactctctgctaatttttaaa-aatatttctgtagagacaagatctcactatgttgtctaagctggtttcaaacttctgggctcaagtgatcctcccaccctggcctcccaaagtgctgggattataggagtgagccactgggctcagTGTGGTGCAG------------------TCTGCAGAGAAGGTGCAGTCTCTGGGCTCCTAGAGAGACTCGTAGGGAAACAAAA-CTTGTCTATCAACTCAGTTCAACACAGGAGACC----ATGTTCTCCGCACTAAAAAGTTCCTTCATCTTT i calJac3.chr19 I 867 C 0 e mm10.chr1 178657502 661 + 195471971 I e canFam3.chr7 36230197 205 + 80974532 I a score=875112.000000 s hg38.chr1_KI270759v1_alt 36055 284 + 425601 TTTAAAGCATCTAAATGATCTGTGTCTCACTTCCTAAGCAGGCTGGTGGGCAGGGAGGGTCACCAGTTGGGGCAGAGCTCAGAGGGAGGTGCACAGCTGTGCAG---------TGTCTAAGCTCCTGCG--TCTCCTGTC----ACTTGGTTCCCGTGGCACCATCTACGCCCATCTCCCTCCC-CCTTAAGGGTTAGCATGACATTGTATCACAGGGATGTTGAT-----TTTCTTTTCACTTCAGTTCTGGATTTTCAAATTCTCAGACCACATACCAAGTTGAAAGCAATCCTTTGTTTCCT s panTro4.chr1 224776342 284 + 228333871 TTTAAAGCATCTGAATGATTTGTGTCTCACTTCCTAAGCAGCCTGGTGGGCAGGGAGGGCCACCAGTTGGGGTAGAGCTCAGAGGGAGGTGCACGGCTGTGCGG---------TGTCTAAGCTCCTGTG--TCTCCTGTC----ACTTGGTTCCCATGGCACCATCTACGCCCATCTCCCTCCC-CCTTAAGGGTTAGCATGACATTGTATCACAGGGATGTTGAT-----TTTCTTTTCACTTCAGTTCTGGATTTTCAAATTCTCAGACTACAAACCAAGTTGAAAGCAATCCTTTGTTTCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226141171 284 - 229942017 TTTAAAGCATCTAAATGATTTGTGTCTCACTTCCTCAGCAGGCTGGTGGGTAGGGAGGGCCACCAGTTGGGGTAGAGCTCAGAGGGAGGTGCACGGCTGTGCGG---------TGCCTGAGCTCCTGCG--TCTCCTGTC----ACTTGGCTCCCATGGCACCATCTATGCCCGTCTCCCTCCC-CGTTAAGGGTTAGCGTGACATTATATCACAGATCTGTTGAT-----TTTCTTTTCACTTCCGTTCTGGGTTTTCAAATTCTCAGACTACAAACCAAGTTGAAAGCAATCCTTTGTTTCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140030977 290 - 143122389 TTTAAAGCATCTAAATGATTTGTGTCTCACTTCCTAAGCAGGCTGGTGGGTAGGGAGGGCCACCAGTTGGGGTAGAGCCCAGAGGAAGGTGCATGGCTGTGCGG---------TGCCTGAGCTCCTGTGATTCTCCTGCCTTGGTTCCGGTTCCCATGGCACCATCTATGCACGTCTCCCTCCC-CCTTAAGGGTTAGCGTGACGTTGTGTCACAGGGATGTTGAT-----TTTCTTTTCACTTCAGTTCTGGATTTTCAAATTCTCAGACTACAAACCAAGTTGAAAGCAATCCTCTGTTTCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16746865 279 - 229590362 TTTAAAGCATCTAAATGATTTGTGTCTCACTTCCTGAGCAGGCTGGTGGGTAGGGAGGGCCACCAGTTGGGGTAGAGCTCAGAGGGAGGTACACAGCTGTGCGG---------TGCCTGAACTCCTGCA--TCTCCTGTC----GCTTGGCTCCCGTGGCACCATCTACGCCCATCTCCCTCCC-CCTTAAGGGTTAGCATCACATTGTATCACAGGGATGTTGAT-----TTTCTTTTCACTTCAGTTCTGGATTTTCAAATTCTCAGACTA-----CAAGTTGAAAGCAATCCTTTGTTTCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223509685 279 - 227556264 TTTAAAGCATCTAAATGATTTGTGTCTCACTTCCTGAGCAGGCTGGTGGGTAGGGAGGGCCACCAGTTGGGGTAGAGCTCAGAGGGAGGTACACAGCTGTGCGG---------TGCCTGAACTCCTGCA--TCTCCTGTC----GCTTGGCTCCCGTGGCACCATCTACGCCCATCTCCCTCCC-CCTTAAGGGTTAGCATCACATTGTATCACAGGGATGTTGAT-----TTTCTTTTCACTTCAGTTCTGGATTTTCAAATTCTCAGACTA-----CAAGTTGAAAGCAATCCTTTGTTTCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16559471 279 - 220367699 TTTAAAGCATCTAAATGATTTGTGTCTCACTTCCTGAGCAGGCTGGTGGGTAGGGAGGGCCACCAGTCGGGGTAGAGCTCAGGGGGAGGTACACAGCTGTGCGG---------TGCCTGAACTCCTGCG--TCTCCTGTC----GCTTGGCTCCCGTGGCACCATCTACGCCCATCTCCCTTCC-CCTTAAGGGTTAGCATCACATTGTATCACAGGgatgttgat-----tttcttttcacttcagTTCTGGATTTTCAAATTCTCAGACTA-----CAAGTTGAAAGCAATCCTTTGTTTCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82358753 279 + 85787240 TTTAAAGCATCTAAATGATTTGTGTCTCACTTCCTGAGCAGTCTGGTGGGTAGGGAGGGCCACCAGTGGGGGTAGAGCTCAGAGGGAGGTGCACGGCTGTGCGG---------TGCCTGAACTCCTGCG--TCTCCTGTC----TCTTGACTCCCGTGGCACCATCTACGCCCATCTCCCTCCC-CCTTAAGGGTTAGCATCACATTGTGTCACAGGGATGTTGAT-----TTTCTTTTCACTTCAGTTCTGGATTTTCAAATTCTCAGACTA-----CAAGTTGAAAGTAATCCTTTGTTTCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14028084 289 - 49578535 TTTAAAGCATCTGAATGATTTGCGTCTCACTTCCTGAGCAGGCTGGTGGGTAGGGAGGGACACTGGTTGGAGTAGAGCTCAGAGGGAGGTGCGAGGCTGTGCAGGGCAGGGGCTGCCTGAGCTCCTGAG--TCTCCTGTC----ACTTGGTCCCCGTGGCACCATCTATGCCCATCTCCCTCCC-TTTTAAGGGATAGCATGACATTTTATCACA----TGTTGAT-----TTTCTTTTCACTTCAGTTCTGGATTTTCAAATTCTCAGACTAGAAACCATGTTGAAAGCAATCCTTCGTTTTCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178658163 261 + 195471971 TTTGGTGCATTAAGATAGTATGAGAATCACTTACTGAACA----GGTGGGTCAGGAGG---------TAGGGCAGAGGTTGAAGGG----GAAACACTCCCTGG---------GACATAAGCCCTGGAG--CCTTCTATT----GCTTTGTTCTTTGAGC----------CCCACCTCCCTACAGTGTTCCAGGCTA-CA-GATGTTTTACCATGCAGATGTTGATATTTCTTATTTTTGACTTTGGTTCTGGGTTTTCAAATCCTCCAATGACAAACTGAGTTGAAAGTGAGCCTTTCTTTTCA i mm10.chr1 I 661 C 0 e canFam3.chr7 36230197 205 + 80974532 I a score=2286411.000000 s hg38.chr1_KI270759v1_alt 36339 750 + 425601 CTTGAACCGTAAACCAGAAATTGTGCTTGGGAAACCATACCAGGTGAC-TAACTGGAAAACATCCCCAAACCTTGTTAGTCTTTGGCCGTAGACATTTAATTCTGAGCCCTGGATGGATGGTGATATTAAATACAG--ATTGTGCGCACATTAGTAGTAGAATGTACCCCTGACCA-----ATTTTTC----------ACACATTTAACCAAGTAAATGGCTTCTTGCCTTCAGTGAGTTTTTATTTCAAGACCAGCAACCATTGC--------------ACCAAGAT-------GAAGAAGT-------------------GAGCCGCG-----TGGTTTTCTCCATCCAGGGGTGCAGAAAGAAAAGTGCAGAGACA--GTCTTCAG-------TGTTTTTATATAAATTCACTTT-----------------------------TGCAAAA---AGTATGT-------------------------------------------TGCTGTGTAATTAAGAGTGTTAATGATGCTGCCTAAAGCATCTAGGGAGAGCAGTCTGGACA-AGGAGAGAATGGGACCGTCACCCACC------GGTGGCTCCTCCGTCTATGGCCT-----------------------CTAGTCATTTTGCTCCCTACCTTTCTTCTGAAGTCAATTCTGGtttttg------------------t---ttttgtt--tttgttttttC---CCTATTTTTCCCAAAGACCCGGGGCTGGAGGCCTGTAAAGGGACCATGCTACAATTTCTGAGCAATCCAGTCTGGTTTACCAGAATTAGAACTCAGTACTGCAGAACCCTGGGAGGTGATGATG-----------------------------------------------------------------------------CAGGTCAATGAGGCC-TTGGCAAGAAG---------AAGGGGAGGGA--------------------------------GGGAG-GATGGAGACGTCAACCTGACATAGGATTTGGAGAAGAG---TCAGAGA s panTro4.chr1 224776626 738 + 228333871 CTTGAACCGTAAACCAGAAATTGTGCTTGGGAAACCATACCAGGTGAC-TAACTGGAAAACATCCCCAAACCTTGTTAGTCTTTGGCCGTAGACATTTAATTCTGAGTCCTTGATGGATGGTGATATTAAATACAG--ATTGTGCGCACATTAGTGGTAGAATGTACCCCTGACCA-----ATTTTTC----------ACACATTTAACCAAGTAAATGGCTTCTTGCCTTCAGTGAGTTTTTATTTCAAGACCAGCAACCATTGC--------------ACCAAGAT-------GAAGAAGT-------------------GAGCCGCG-----TGGTTTTCTCCATCCAGGGGTGCAGAAGGAAAAGTGCAGAGACA--GTCTTCAG-------TGTTTTTATATGAATTCACTTT-----------------------------TGCAAAA---AGTATGT-------------------------------------------TGCTGTGTAATTAAGAGTGTTAATGATGCTGCCCAAAGCATCTAAGGAGAGCAGTCTGGACA-AGGAGAGAATGGGACCGTCACCCCCT------GGTGGCTCCTCCGTCTGTGGCCT-----------------------CTAGTCATTTTGCCCCCTACCTTTCTTCTGAAGTCAATTCTG---------------------------------GTT--TTTGTTTTTTT---CCTATTTTTCCCAAAGACCCGGGGCTGGAGGCCTGTGAAGGGACCATGCTACAATTTCTGAGCAATCCAGTCCAGTTTACCAGAATTAGAACTCAGTACTGCAGAACCCTGGGAGGTGATGATG-----------------------------------------------------------------------------CAGGTCAATGAGGCC-TTGGCAAGAAG---------AAGGGGAGGGA--------------------------------GGGAG-GATGGAGACGTCAACCTGACATAGGATTTGGAGAAGAG---TCAGAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226141455 742 - 229942017 CTTGAACCGTAAATCAGAAATTGTGCTTGGGAAACCATACCAGGTGAC-TAACTAGAAAACATCCCCAAACCTTGTTAGTCTTTGGCCGTAGACATTTAATTCCGAGCCCTTGATGGATGGTGATGTTAAACACAG--ATTGTGCATGCATTAGTAGTAGAATGCACCCCTGACCG-----ATTTTTC----------ACACATTTAACCAAGTAAATGGCTTCTTGCCTTCAGTGGGTTTTTATCTGAAGACCAGCAACCATTGC--------------ACCAAGAT-------GAAGAAGT-------------------GAGCCGCG-----TGGTTTTCTCCATCCAGGGGTGGAGAAAGAAAAGTGCAGAGACA--GTCTTCAG-------TGTTTTTATATAAATTTGC-TT-----------------------------TGCAAAA---AGTATGT-------------------------------------------TGCTGTGTAATTAAAAATGTTAATGATGCTGCCTAAAGCATCTAAGGAGAGCAGTATGGACA-AGGAGAGAATGGGACCGTCACCCACT------GGTGGCTCCTCCGTCTATGGTCT-----------------------CTAGTCATTTTGCTCCCTACCGTTCTTCTGAAGTCAATTCTG------G------------------T---TTTTGTT--TTTGTTTTTT----CCTATTTTTCCCAAAGACCCGGGGCTGGAGGTCTGTAAAGGGACCCTGCTACAATTTCTCAGCAATCCAGTCCAGTTTACCAGGATTAGGACTCACTACTGCAGAATCCTGGGAGGTGATGATG-----------------------------------------------------------------------------TAGGTCAATGAGGCC-TTGGCGAGAAG---------AAGGGGAGGGA--------------------------------GGGAG-GATGGAGACGTCAACCTGATGTAGGATTTGGAGAAGAG---TCAGAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140031267 745 - 143122389 CTTGAACCGTAAATCAGAAATTGTGCTTGGGAAACCATACCAGGTGAC-TAACTAGAAAACATCCCCAAACCTTGTTAGTCTTTGGCCGTAGACATGTAATTCTGAGCCCTTGATGGATGGTGATGTTAAATACAG--ACTGTGCACACATTAGTAGTAGAATGCACCCCTGACCG-----ATTTTTC----------ACACATTTAACCAAGTAAATGGCTTCTTGCCTTCAGTGGGTTTCTATTTGAAGACCAGCAACCATTGC--------------ACCAAGAT-------GAAGAAGT-------------------GAGCCTCA-----TGGTTTTCTCCATCCAGGGGTGCAGAAAGGAAAGTGCAGAGACA--GTCTTCAG-------TGTTTTTATATGAATTTGC-TT-----------------------------TGCAAAA---AGTATGC-------------------------------------------TGCTGTGTAATTAAGAGTGTTAATGATGCTGCCTAAAGCATCTAAGGAGAGCAGTGTGGACA-AGGAGAGAATGGGACCGTCACCCACC------GGTGGCTGCTCCGTCTATGGTCT-----------------------CTAGTCAGTTTGCTCTCTACCTTTCTTCTGAAGTCAATTCTG------g-----------------tt---ttttgtttgtttgtttttt----CCTGTTTTTCCCAAAGACCCGGGGCTGGAGGCCTGTAAAGGGACCATGCTACAATTTCTCATCAATCCAGTCCAGTTTACCAGGATTAGGACTCAGTACTGCAGAACCCTGGGAGGTGACGATG-----------------------------------------------------------------------------TAGGTCAATGAGGCC-TTGGTGAGAAG---------AAGGGGAGGGA--------------------------------GGGAG-GATGGAGACGTCAACCTAATGCAGGATTTGGAGAAGAG---TCAGAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16747144 707 - 229590362 CTTGAACCGTAAATCAGAAATTGTGCTTGGGAAACCAAACCAGGTGAC-TAACTAGAAAACATCTCCAAACCTTGTTAGTCTTTGGCCGTAGACGTTTAATTCTG-------------------TATTAAATACAG--ATTGTGTGTGCATTAGTAGTAGAATGCACCCC-AACCG-----ATTTTTC----------ACACATTTAACCAAGTAAATGGCTTCTTGTCTTCAGTGAGTTTTTATTTCAAGACCAGCAACCATTGC--------------ACCAAGAT----------GAAGT-------------------GAGCCGTG-----TGGTTTTCTCCATCCAGGGGTGCAGAAAGAAAAGTGCAGAGACA--GTCTTCGG-------TGTTTTTATATAAATTTGCTTT-----------------------------TGCAAAA---AGTATGT-------------------------------------------TGCTGTGTAATTAAGAGTGT---CGATGCTGCCTAAAGCATCTAAGGAGAGCAGTATGGACA-AGGAGAGAATGGGACCGTCACCCTCC------GGTGGCTCCTCCGTCTATGGTCT-----------------------CTAGTCGTTTTGCTCTCTACCTTTCTTCTGAATTCAATTCTG------G------------------T---TTTTATT--TTTGTTTTTTT---CCTGTTTTTCCCAAAGACCCGGGGCTGGAGGCCTGTAAAGAGACCAGGCTACAATTTCTCAGCAATCCAGTCCAGTTTACCAGGATTAGAACTCAGTACTGCAGACCCCTGGGAGGTGATGATG-----------------------------------------------------------------------------TAGGTCGGTGAGGCC-TTGGCGAGAAG---------AAGGGGAG--------------------------------------------GGAGACGTCAACCTGACGTAGGATTTGGAGAAGAG---TCAGGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223509964 707 - 227556264 CTTGAACCGTAAATCAGAAATTGTGCTTGGGAAACCAAACCAGGTGAC-TAACTAGAAAACATCTCCAAACCTTGTTAGTCTTTGGCCGTAGACGTTTAATTCTG-------------------TATTAAATACAG--ATTGTGTGTGCATTAGTAGTAGAATGCACCCC-AACCG-----ATTTTTC----------ACACATTTAACCAAGTAAATGGCTTCTTGTCTTCAGTGAGTTTTTATTTCAAGACCAGCAACCATTGC--------------ACCAAGAT----------GAAGT-------------------GAGCCGTG-----TGGTTTTCTCCATCCAGGGGTGCAGAAAGAAAAGTGCAGAGACA--GTCTTCGG-------TGTTTTTATATAAATTTGCTTT-----------------------------TGCAAAA---AGTATGT-------------------------------------------TGCTGTGTAATTAAGAGTGT---TGATGCTGCCTAAAGCATCTAAGGAGAGCAGTATGGACA-AGGAGAGAATGGGACCGTCACCCTCC------GGTGGCTCCTCCGTCTATGGTCT-----------------------CTAGTCGTTTTGCTCTCTACCTTTCTTCTGAATTCAATTCTG------G------------------T---TTTTATT--TTTGTTTTTTT---CCTGTTTTTCCCAAAGACCCGGGGCTGGAGGCCTGTAAAGAGACCAGGCTACAATTTCTCAGCAATCCAGTCCAGTTTACCAGGATTAGAACTCAGTACTGCAGACCCCTGGGAGGTGATGATG-----------------------------------------------------------------------------TAGGTCGGTGAGGCC-TTGGCGAGAAG---------AAGGGGAG--------------------------------------------GGAGACGTCAACCTGACGTAGGATTTGGAGAAGAG---TCAGACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16559750 719 - 220367699 CTTGAACTGTAAATCAGAAATTGTGCTTGGGAAACCAAACCAGGTGACTTAACTAGAAAACATCTCCAAACCTTGTTAGTCTTTGGCCGTAGACGTTTAATTCTG-------------------TATTAAATACAG--ATTGTGTGTGCATTAGTAGTAGAATGCACCCC-AACCG-----ATTTTTC----------ACACATTTAACCAAGTAAATGGCTTCTTGTCTTCAGTGAGTTTTTATTTCAAGACCAGCAACCATTGC--------------ACCAAGAT----------GAAGT-------------------GAGCCGCG-----TGGTTTTCTCCATCCAGGGGTGCAGAAATAAAAGTGCAGAGACA--GTCTTCgg-------tgtttttatataaattcgCTTT-----------------------------TGCAAAA---AGTATGT-------------------------------------------TGCTGTGTAATTAAGAGTGT---TGATGCTGCCTAAAGCATCTAAGGAGAGCAGTATGGACA-AGGAGAGAATGGGACCGTCACCCTCC------GGTGGCTCCTCCGTCTATGGTCT-----------------------GTAGTCGTTTTGCTCTCTACCTTTCTTCTGAATTcaattctg------g------------------t---ttttatt--tttgttttttt---cctgtttttcccaAAGACCCGGGGCTGGAGGCCTGTAAAGGGACCAGGCTACAATTTCTCAGCAATCCAGTCCAGTTTACCAGGATTAGAACTCAGTACTGCAGACCCCTGGGAGGTGATGATG-----------------------------------------------------------------------------TAGGTCGGTGAGGCC-TTGGCaagaag---------aaggggaggga--------------------------------gggag-gacggaGACGTCAACCTGACGTAGGATTTGGAAAAGAG---TCAGACG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82359032 736 + 85787240 CTTGAACCGTAAATCAGAAATTGTGCTTGGGAAACCAAACCAGGTGAC-TAACTAGAAAACATCTCCAAACCTTGTTAGTCTTTGGCCATAGACATTTAATTCTG-------------------TATTAAATACAG--ATTGTGTGTGCATTAGTAGTAGAATGCACCCC-AACCG-----ATTTTTC----------ACACATTTAACCAAGTAAATGGCTTCTTGTCTTCAGTGAGTTTTTATTTCAAGACCAGCAACCATTGC--------------ACCAAGAT----------GAAGT-------------------GAGCTGCG-----TGGTTTTCTCCATCCAGGGGTGCAGAAAGAAAAGTGCAGAGACA--GTCTTCGG-------TGTTTTTATATAAATTCGCTTT-----------------------------TGCAAAA---AGTATGT-------------------------------------------TGCTGTGTAATTAAGAGTGT---TGATGCTACCTAAAGCATCTAAGGAGAGCAGTATGGACA-AGGAGAGAATGGGACCGTCACCCTCC------AGTGGCTCCTCTGTCTATGGTCT-----------------------CTAGTCGTTTTGCTCCCTACCTTTCTTCTGAATTCAATTCTG------Gttttttttttgttttattt---ttttgtt--ttttttttttt---catgtttttCCCAAAGACCCGGGGCTGGAGTCCTGTAAAGGGACCATGCTACAATTTCTCAGCAATCCAGTCCAGTTTACCAGGATTAGAACTCAGTACTGCAGAACCCTGGGAGGTGATGATG-----------------------------------------------------------------------------TAGGTCAGTGAGGCC-TTGGCGAGAAG---------AAGGGGAGGGA--------------------------------GGGAG-GACGGAGACGTCAACTTGACATAGGATTTGGAGAAGAG---TCAGACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14028373 748 - 49578535 CTT-AACGGTAAATCAGAAATTGTGCTGGGGAAAGCGTACCCGGTGAC-TACCTAGAAAACGTCCCC-AACCTTGTTAGTCTTTGGCCGTAGGCATTTAATTCTGAGCCCCTGATGAATGGTGATGTTAAATACAG--ATTGTGTGTGCGTTAGTGTTAGAATGCACCCT-GACCG-----ATTTTTC----------ACACATTTCACCAAGTAAATGGCTTCTTGCCTTCAGTGGGTTTGTATTTCAAGACCAGCAACCATTGC--------------ACCAAGTT-------GAAGAAGT-------------------GAGTCACA-----TGGTTTTCTCCATCGAGGAATGCAGAAAGAAAAGTGCAGAGGCA--GTCTTCAG-------TGTTTTTATATACATTTGCTTT-----------------------------TGCGAAA---AGTATGT-------------------------------------------TGCTG---------------------CGCTGTCTAAAGCGCCC---GAGAGTGGTGTGGACG-AGGAGAGGATAGGACCGTCGGCCAAT------AGTGGCTCCTCTGTCTGTGGTCT-----------------------TGAGTCATTTTGCTC-CTGCCTTACTTCTGAAGTCAATTCTG------G------------------T---TTTTGTT--TTTGCTTTTAT---CCTATTTCTCCCAAAGACCTGGGGCTGGAAGCCAGTAAAGGGACCGCACTACAATTTCTCAGCCATCCAGTCCGGTTTACCAGGATTAGAACTCAGTACTGCAGAGCCCTGGGAGGTGATGATG-----------------------------------------------------------------------------TAGGTGAACGAGGCC-TTGGTGAGAag---------agagggagggagggagagagggagggggggagggagggagcgggggag-gACAGAGGCATCAACCTGACGCAGGATTTGAAGAAGAG---TCGGAGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178658424 955 + 195471971 GTTGAATGATGAATAAGAGTTTGTGCTTGGGAGACCACACTAGGTGGT-CAGGAAGGAAAAGGGC--------------TGTTTGACCGTTAGTATTTAGTTCAGAGCCCCTGGTGGACAGAATGGCTAAATATGGTCTCTGTGTGTGTGTAAGCAATAGAACACACCCCCGACTGTGTAAGATTTTC----------ACATGTTTAACCAAATAAATGGCTTCCTGCCTCTTGTGGGTTTTTCTTTTAAGGCCGGCAGTCATCAC--------------ACCAAGAT-------GACAAAATTCAAGAGTCCACGGCATCAGAGTCCTGAGTGTTGGCTTTCTAAGTCCAGGGACCCTAAGGAAA----GCAGAGACA--GCCTTCTGGATGTTTTGCTCCTGCAAAAAATTGTGTTGTTGTGTAACAGCTGTTGGTACAGTTCTGTGCAGAGCACAGCATGCCCAAGGTCCTGCATTCCATGCCGAGCGCCCAAACAAGCAAACATGCTGTTTGATTAAAAGTATTTGTGCTGTACTTTAAAACAT----GAAGAGTGATATGGACAGAGAAGGGAGGGGGTCCATCCTCCCCTCCCAAAGATGAGCATGTAGTCTATGGTTTTCCTAGgtttttttgtttgtttgtttgtttgtttgtttCCAATATTTTCCCTTGGAACCACTCAG------A------------------CCAATTCTGTT--CTTCTTTCCTCCCACCATTTTCTCCCAGAAACTTCAGGCAGGAGGTGGGTGAAGTGACCAGTCT--AGTTTTTCAGCTGTCCATTCCAATTTGTCAAGATTAGCACTCAGTACTCCAGAG-CTGGTGAGCTGAGGATGAGAGGGTAGCCTCCGAGTGAGTGAGTGagcgagcgagcgagcgagcaagcaagcaagcaagcaagcaagcaagcaaacaGCTAACTGAGGCC-TTTGTAAGAAGCTGGGGGTAAAGAGGAGGGG--------------------------------GAACGTGAGGGAGGAGCCAACTTAA---AGGACTTGGAAAACAGCAATCAGAGA i mm10.chr1 C 0 C 0 s canFam3.chr7 36230402 688 + 80974532 CTTGTACTGCAATTGACACATTGTGCTTGAGAGACCGCACCAGGTGAC-TAACTAG-AAACATCCCCAAACATTGGTGGATTCTGCACCTATCTGATGGCCTCTGAGCTGTCACTGG---------------GCAG--CTGGTGTGGG---TGGCAGTAGAATACAGCCCAGCCCG-----GCTCTTCAAGGTTTGCTACACATTCAACCAATGAAAAGTCTCCTTGCCTTCAGTGGGTTTCTATTTCAAGAGCAGCAACCCTTGCCAGAGGAAGAAATTAACAAGAGGTCAAGGGATAGAGT-------------------TAGTCAGA-----TGGTTTTCCGAATCGAGGGATCCAGA----AAAATGCAGAGACCTTGCCTGTAG-------CGTTTTTATATAAAATTACTTT-----------------------------TCCATAA---AATAAGT-------------------------------------------TGGCATTTCATTAAGAGTGTTGATGATGTGGATTAGAACA-----GGAGAG-GCTGTAGAAATAGGAAAGAGTGGGTCACTCACCCAAA------GGTGGCCCCTTTATGCGTGGTCT-----------------------GCATTCGATTTGCTCCTCACCTTATTTCAGAAGCTGATGCTG------G------------------G-----TTATT--ATGGTTT-------CCTGTTGTTCCCAAAGATGTGGGGCTCAAGG-GAGCTCAGGCACCATTGTAGAATTTCTCAGCAACCCAGGCCAGTTTACCAGGATTAGAACTTGGTGCTCTAGAGCCAAGGGGGACAATGGGG-----------------------------------------------------------------------------CAG-CCAAAGAGGCTGCTGTAGAGGAG---------CCGGGGA------------------------------------------------------------------------------------------ i canFam3.chr7 I 205 C 0 a score=62743.000000 s hg38.chr1_KI270759v1_alt 37089 20 + 425601 TTAAGAATTTAGATTAATGT s panTro4.chr1 224777364 20 + 228333871 TTAAGAATTTAGATTAATGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226142197 20 - 229942017 TTAAGAATTTAGATTAATGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140032012 20 - 143122389 TTAAGAATTTAGATTAATGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16747851 20 - 229590362 TTAAGAATTTAGATAAATGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223510671 20 - 227556264 TTAAGAATTTAGATAAATGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16560469 20 - 220367699 TTAAGAATTTAGATAAATgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82359768 20 + 85787240 TTAAGAATTTAGATAAATGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14029121 17 - 49578535 TGAAGAATTTAGATTAg--- i calJac3.chr19 C 0 C 0 s mm10.chr1 178659379 20 + 195471971 TGAAGCATCTAGATTAATGC i mm10.chr1 C 0 I 727 e canFam3.chr7 36231090 0 + 80974532 C a score=252317.000000 s hg38.chr1_KI270759v1_alt 37109 90 + 425601 gccaggcgccgtggctcatgcctgtaatcccaacactttgggaggctaaggt-ggcagatcgcctgaggtcaggagttcaagaccagcctg s panTro4.chr1 224777384 90 + 228333871 gccaggcgccgtggctcacgcctgtaatcccaacactttgggaggctaaggt-ggcagattgcctgaggtcaggggttcaagaccagcctg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226142217 90 - 229942017 gctgggcaccgtggctcacacctgtaatcccaacactttgggaggctaaggt-ggcagatcgtctgaggtcaggcgttcaagaccagcctg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140032032 90 - 143122389 gtcaggcgccgtggctcacgcctgtaatcccagcactttgggaggctaaggt-ggcagatcgcctgaggtcaggagttcaagaccagcctg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16747871 90 - 229590362 gccgggtgccgtggctcacgcctgtaatcccaacactttgggaagccaagac-ggcagatcgcctgaggtcaggggttcaagaccatcctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223510691 90 - 227556264 gccgggtgccgtggctcacgcctgtaatcccaacactttgggaagccaagac-ggcagatcgcctgaggtcaggggttcaagaccatcctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16560489 90 - 220367699 gccgggtgccgtggctcatgcctgtaatcccaacactttgggaagccaagac-agcagatcgcctgaggtcaggggttcaagaccatcctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82359788 90 + 85787240 gccgggtgccgtggctcacgcctgtaatcccaacactttgggaagccaagac-ggcagatcgcctgaggtcaggagttcaagaccatcctg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14029138 89 - 49578535 gctgggtgcgatcgcacatggctgtgatcccagcattttgagaggccaaggcgggcagatca--tgaggtcaggagatggagaccatcctg i calJac3.chr19 C 0 C 0 e mm10.chr1 178659399 727 + 195471971 I e canFam3.chr7 36231090 0 + 80974532 C a score=148248.000000 s hg38.chr1_KI270759v1_alt 37199 59 + 425601 gccaacatggtgaaaccccgtctctgctaaaaatac---aaaaattagccgagtgtggtggt s panTro4.chr1 224777474 59 + 228333871 gccaacatgatgaaaccccgtctctgctaaaaatac---aaaaattagccgagcgtggtggt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226142307 59 - 229942017 gccaacatggtgaaaccccatctctactaaaaatac---aaaaattagccgtgcgtgttggc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140032122 58 - 143122389 gccaacatgatgaaaccccgtctctactaaaaatac---aaaaattagctgggc-tggtggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16747961 59 - 229590362 gccaacatggtaaaaccccgtctctactaaaaatac---aaaaattagccaggtgtggtggt i rheMac3.chr1 C 0 I 199 s macFas5.chr1 223510781 59 - 227556264 gccaacatggtaaaacaccgactctactaaaaatac---aaaaattagccaggtgtggtggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16560579 59 - 220367699 gccaacatggtaaaaccccgtctctactaaaaatac---aaaaattagccaggtgtggtggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82359878 59 + 85787240 gccaacatggtaaaaacccgtctctactaaaaatac---aaaaattagccaggtgtagtggt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14029227 62 - 49578535 gccaacatggtgaaaccccatctctactaaaaaaatgcaaaaaattagccaggcatggtggt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36231090 21 + 80974532 --------GACAAAGCC------------AAGGGAG---AGAGG------------------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178659399 727 + 195471971 I a score=1055596.000000 s hg38.chr1_KI270759v1_alt 37258 370 + 425601 gggcgcctgtaattccagctacttgggaggct--gaggcaggagaattgctttaagctgggaggcggagcttgcagtgagccgagatcacaccactg--cactccagcctgggcaacagagcgagactccatctc----------aaaaaaaaaaaaa---------------aagaaTTTAGATTAGTGTTTATTTTGGAAAGGGAGAGCCATAAA--TATATATTTCAGGTGTCTGTCTTCACTATAAGTTTGTTTATGGTTGAATTTGATAAATGACTTCCTTTGGTCTGTGGAGTGTATTAGTTATTTGGGTGTGATGTGTTGGAAGAAGATAGTTAATGCATTTACAGGAGGATCATGTGAGATTTCAGATCAGGGCCACCTCATGCCTTTAATAC s panTro4.chr1 224777533 373 + 228333871 gggcgcctgtaattccagctacttgggaggct--gaggcaggagaattgctttaagctgggaggcggagcttgcagtgagccgagatcacaccactg--cactccagcctgggcaacagagcgagactccatctc-------aaaaaaaaaaaaaaaa---------------aagaaTTTAGATTAGTGTTTATTTTGGAAAGGGAGAGCCATAAA--TATATATTTCAGGTGTCTGTCTTCACTATAAGTTTGTTTATGGTTGAATTTGAAAAATGACTTCCTTTGGTCTGTGGAGTGTATTAGTTATTTGGGTGTGATGTGTTGAAAGAAGATAGTTAATGCATTTACAGGAGGATCATGTGAGATTTCAGATCAGGGCCACCTAATGCCTTTAATAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226142366 371 - 229942017 aggcacctgtaatctcagctactcgggaggct--gaggcaggagaattgcttgaagctgggaggcggagcttgcagtgagccgagatcacaccactg--cactccagcctgggcaacagagcgagactccatctc---------aaaaaaaaaaaaaa---------------aagaaTTTAGATTAGTGTTTATTTTGGAAAGAGAGAGCCATAAA--TATATATTTCAGATGTCTGTCTTCACTATAAGTTTGTTTATGGTTGAATTTGAAAAATGACTTCCTTTGGTCTGTGGAGTGTATTAGTTATTTGGGTGTGATGTGTTGGAAGAAGATAGTTAATGCATTTACAGGAGGATGATGTGAGATTTCAGATCAGGGCCACCTAATGCCTTTAATAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140032180 371 - 143122389 gggtgcctgtaatcccagctacttgggaggct--gagacaggagaattgcttgaagctgggaggcagagcttgcagtgagccgagatcacaccactg--cactccagcctgggtgacagagcgagactccatctc---------aaaaaaaaaaaaaa---------------aaaaaTTTAGATTAGTGTTTATTTTGGAAAGAGAAAGCCATAAA--TATATATTTCAGGTGTCTGTCTTCACTATAAGTTTGTTTATGGTTGAATTTGAAAAATAACTTCCTTTGGTCTGTGGAGTGTATTAGTTATTCGGGTGTGATGTGTTGGAAGAAGATAGTTAATGCATTTACAGGAAGATCATGTGAGATTTAAGATCAGGGCCGGCTAATGCCTTTAATAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16748219 370 - 229590362 GGgcacctgtaattccaactactggggaggct--gaggcaggagaattgcttgaagctgggaggtggaggttgtagtgagccgagatcacaccattg--cactccaacctgggcaacagagctagactccgtctc----------aaaacaaaaaaaa---------------aagaaTTTAGATTAGTGTTTATTTTGGAAAGAGAGAGCCATAAA--TATTTATTTCAGGTGTCTGTCTTCACCTTAAGTTTGTTTATGGTTGAATTTGAAAAATAACTTCCTTTGGTCTGTGGAGTGTACTAGTTATTTGGGTGTGATGTGTTGGAAGAAGAGAGTTAATAAATTTACATGAGGATCACGTGAGATTTAAGATCAGGGCCGGCTAATGCCTTTAACAC i rheMac3.chr1 I 199 C 0 s macFas5.chr1 223510840 370 - 227556264 gggcacctgtaattccaactactggggaggct--gaggcaggagaattgcttgaagctgggaggtggaggttgtagtgagccgagatcacaccattg--cactccaacctgggcaacagagctagactccgtctc----------aaaacaaaaaaag---------------aagaaTTTAGATTAATGTTTATTTTGGAAAGAGAGAGCCATAAA--TATTTATTTCAGGTGTCTGTCTTCACCTTAAGTTTGTTTATGGTTGAATTTGAAAAATAACTTCCTTTGGTCTGTGGAGTGTACTAGTTATTTGGGTGTGATGTGTTGGAAGAAGAGAGTTAATAAATTTACATGAGGATCACGTGAGATTTAAGATCAGGGCCGGCTAATGCCTTTAACAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16560638 363 - 220367699 gggcacctgtaattccaactactggggaggct--gaggcagga-----------------gaggtggaggttgtagtgagccgagatcacaccattg--cactccaacctgggcaacagagctagactccgtctcaaaaaaaaaaaaaaaaaaaaaaa---------------aaaaatttagattagCGTTTATTTTGGAAGGAGAGagccataaa--tatttatttcaggtGTCTGTCTTCACTTTAAGTTTGTTTATGgttgaatttgaaaaataacttcCTTTGGTCTGTGGAGTGTACTAGTTATTTGGGTGTGATGTGTTGGAAGAAGAGAGTTAATAAATTTACATGAGAATCACGTGAGATTTAAGATCAGGGCCGGCTAATGCCTTTAATAc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82359937 374 + 85787240 gggcgcttgtaattccaactacttgggaggct--gaagcaggagaattgcttgaagctgggaggtggaggttgtagtgagccgagatcacaccactg--cactccaacctgggcaacagagctagactccgtctc------aaaaaaaaaaaaaaaaa---------------aagaaTTTAGATTAGCGTTTATTTTGGAAAGAGAGAGCCATAAA--TATTTATTTCAGGTATCTGTCTTCACTTCAAGTTTGTTTATGATTGAATTTGAAAAATAACTTCCTTTGGTCTGTGGAGTGTACTAGTTATTTGGGTGTGATGTGTCGGAAGAAGAGAGTTAATAAATTTACGTGAGGATCACGTGAGATTTAAGATCAGGGCCGGCTAATGCCTTTAACAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14029289 383 - 49578535 gtgcaccaggagtcccagctactcgggaggctgagaggcaggggaattgcttgaactcaggaggcagaggtcgtagtaagctgagattgcaccactgcacactccagcct-ggtgacagagcaagactccgtctc---aaaaaaaaaaaaaaaaaaaacaaataaaTAAAAATAAGAATTTAGATTAATGTTTATTTTGAAAAGAGAGAACCATAAATGTATGTATTTCAGGTATCCGTCTTCGCTCTAAGTTTGTTTATAATTGAATTTGAAAAGCGACTTCCTTTGGTCTGTGGACTGTATTAG--------------TGCGTTGGAAGAAGCTGGTTAATGCATTTACGTGAGGATCATTGGAGATTTAAGATCAGGGCCGGCTAATGCCTTTCAGAC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36231111 256 + 80974532 AGGCACCTGC--------------------TC--ACAGCAGGA-------------CTCAGAGAAGAAGG----------------------CATGG----------------------------------------------------------AGG---------------CAGAGTTTAGATTCAACTTTACTTTG-AGAGAAACAGCCATAAA--CACACATTCTCCATATCTGCCTTCACTGTTAGTTTGCTCATGGCTGAACTCGAAGGCTGAAATCCTCTGG---------CACATCAACTACTT-GGTGTGAT--GGTGGAAGAAGACAGTTAATACATTTCGCATGGGATCATTGGCGATTGATGGTGGGAGCTGGCTAACAACTTTAATGT i canFam3.chr7 C 0 I 151 e mm10.chr1 178659399 727 + 195471971 I a score=312549.000000 s hg38.chr1_KI270759v1_alt 37628 121 + 425601 ATAAAAACCATTT-AAAACATTAAAAAG-TTCCATGCAATCTTTTTTT---TTTTTCCTA-CCACAATTTATGTCTTTATGAGGAAT-ATCTCCA-TTCTGCCTCTGCTCTGCCAGGGTAATTATTATC s panTro4.chr1 224777906 117 + 228333871 ATAAAAACCATTT-AAAACATTAAAAAGTTTCCATACAA-----TTTT---TTTTTCCTA-CCACAATTTATGTCTTCATGAGGAAT-ATCTCCA-TTCTGCCTCTGCTCTGCCAGGGTAATTATTATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226142737 119 - 229942017 ATAAAAACCATTT-AAAACATTAAAAAG-TTCCATACAATCT--TTTT---TTTTTCCTA-CCACGATTTATGTCTTTATGAGGAAT-ATCTCCA-TTCTGCCTCTGCTTTGCCAGGGTAATTATTATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140032551 122 - 143122389 ATAAAAACCGTTTAAAAACATTAAAACG-TTCCATACAATCT--TTTT---TTTTTCCTACCCATGATTTGTGTCTTTATGAGGAAT-ATCTCTATTTCTGCCTCTGCTCTGCCAGGGTAATTATTATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16748589 119 - 229590362 ATAAAAACCATTT-AAAATCTGCAACAG-TTCCATACAATCT--TTTT---TTTTTCCTA-CCACGATTTATGTCTTTATGAGGAAT-ATCTCCA-TTCTGCTTCTGCTCTGCCAGGGTAATTATTATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223511210 119 - 227556264 ATAAAAACCGTTG-AAAATCTGCAACAG-TTCCATACAATCT--TTTT---TTTTTCCTA-CCACGATTTATGTCTTTATGAGGAAT-ATCTCCA-TTCTGCTTCTGCTCTGCCAGGGTAATTATTATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16561001 120 - 220367699 ataaaaaccattt-aaaatctGCAAAAG-TTCCAtacaatct--tttt--gtttttccta-ccaCGATTTATGTCTTTATGAGGAAT-ATCTCCA-TTCTGCCTCTGCCCTGCCAGGGTAATTATTATC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82360311 122 + 85787240 ATAAAAACCATTT-AAAATCTGCAACAG-TTCCATACAATCT--TTTTTTTTTTTTCCTT-CCACGATTTATGTCTTTATGAGGAAT-ATCTCCA-CTCTGCCTCTGCCCTGCCAGGGTAATTATCATC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14029672 121 - 49578535 ATAAAAACGGTAT-AAAACATTAAAAAG-TTCCATACAATCGA-TTTT---TTTTTCTGA-CCACAATTTATTCCTTTATGAGAAATAATCTCCA-TTCTGCCTCTGCTCTGCCAGGGCGATTATTATC i calJac3.chr19 C 0 C 0 e mm10.chr1 178659399 727 + 195471971 I e canFam3.chr7 36231367 151 + 80974532 I a score=173114.000000 s hg38.chr1_KI270759v1_alt 37749 63 + 425601 CTGTATACAC-TCAGGTCTGTGTTCAAATCAGCATAACG-AAGGCTGCTATGAAAATGAATATAG s panTro4.chr1 224778023 63 + 228333871 CTGTATACAC-TCAGGTCTGTGTTCAAATCAGCATAACG-AAGGCTGCTATGAAAATGAATATAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226142856 63 - 229942017 CTGTATAAAC-TCAGGTCTGTGTTCAAATCAGCATAATG-AAGGCTGCTATGAAAATGAATATAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140032673 65 - 143122389 CTGTATACACTTCAGGTCTGTGTTCAAATCATCATAATGAAAGGCTGCTATGCAAATGAATATAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16748708 63 - 229590362 CTGTATACAC-TCAGGTCTGTGTTCAAATCAGCATAATG-AAGGCTGCTGTGAAAATGAATACAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223511329 63 - 227556264 CTGTATACAC-TCAGGTCTGTGTTCAAATCAGCATAATG-AAGGCTGCTGTGAAAATGAATACAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16561121 63 - 220367699 CTGTATACAC-TCAGGTCTGTGTTCAAATCAGCATAATG-AAGGCTGCTATGAAAATGAATACAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82360433 63 + 85787240 CTGTATACAC-TCAGGTCTGTGTTCAAATCAGCATAATG-AAGGCTGCTATGAAAATGAATAGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14029793 63 - 49578535 CAGCATCCAC-TGCGGTCCGCGTTCAAATTGGCGTAATG-AAGGCTGGTGTGAAAATGAATACAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36231518 43 + 80974532 ctgcacacac-tcttctccttctttctttc--taaaata---------------aataaat---- i canFam3.chr7 I 151 C 0 e mm10.chr1 178659399 727 + 195471971 I a score=80531.000000 s hg38.chr1_KI270759v1_alt 37812 25 + 425601 AATTTT----CATAAAGTTCATGCTAAAT s panTro4.chr1 224778086 25 + 228333871 AATTTT----CATAAAGTTCATGCTAAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226142919 25 - 229942017 AATTTT----CATAAAGTTCATGCTAAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140032738 25 - 143122389 AATTTT----CATAAAGTTCATGCTAAAT i nomLeu3.chr5 C 0 M 100 s rheMac3.chr1 16748771 25 - 229590362 AGTTTT----CATAAAGTTCATGCTAAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223511392 25 - 227556264 AGTTTT----CATAAAGTTCATGCTAAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16561184 25 - 220367699 AGTTTT----CATAAAGTTCATGCTAAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82360496 25 + 85787240 AGTTTT----CATAAAGTTCATGCTAAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14029856 25 - 49578535 AATTTT----GATAAAGTTCATGCTGAGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178660126 25 + 195471971 catgtc----tctgagccccTTCTTCCAC i mm10.chr1 I 727 C 0 s canFam3.chr7 36231561 28 + 80974532 -aTTTTTTCCCCCAAAGTTCCTGCTACAT i canFam3.chr7 C 0 C 0 a score=754749.000000 s hg38.chr1_KI270759v1_alt 37837 263 + 425601 TCTTAAACTTTAGCTTTTACATTTTTGGCAGTAGGTTA-----TAGGTAGGA-----GTCATCTTTGTAATTGACATTTAAACGCAATTTTTCTTCTCATAATTGATAACGACTTCATTCGTGCCAGCCGCAAAACCCAGTGTATTATTCTTGTCAGTGCTTGACGGTTTTGACAGGCCAGAAAAATTGCAAGTAAAATAGATATATTTGGGCGTGAGATGTTGACTTATAATTCATGAAGCTGCAACCTTCCACCTGTAAAGGAGAAGAATT s panTro4.chr1 224778111 263 + 228333871 TCTTAAACTTTAGCTTTTACATTTTTGGCAGTAGGTTA-----TAGGTAGGA-----GTCATCTTTGTAATTGACATTTAAACGCAATTTTTCTTCTCATAATTGATAACGACTTCATTCGTGCCAGCCGCAAAACCCAGTGTATTATTCTTGTCAGTGCTTGACGGTTTTGACAGGCCAGAAAAATCGCAAGTAAAATCGATATATTTGGGCATGAGATGTTGACTTATAATTCATGAAGCTGCAACCTTCCACCTGTAAAGGAGAAGAATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226142944 263 - 229942017 TCTTAAACTTTTGCTTTTACATTGTTGGCAGTAGGTTA-----TAGGTAGGA-----GTCATCTTTATAATTGACATTTAAACGCAATTTTTCTTCTCATAATTGATAACGACTTCATTCGTGCCAGCCGCAAAACCCAGTGTATTATTCTTGTCAGTGCTTGACGGTTTTGACAGGCCAGAAAAATCGCAAGTAAAATAGATATATTTGGGCATGAGATGTTGACTTATAATTCATGAAGCTGCAACCTTCCACCTGTAAAGGAGAAGAATT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16748796 263 - 229590362 TCTTCAACTTTAGCTTTTACATTTTTAGCAGTAGGTTA-----TAGGTAGGA-----GTCATCTTTGTAATTGACATTTCAACGCAAATTTTCTTCTCATAATTGATAACGACTTCATTCGTGCCAGCTGCAAAACCCAGTGTATTATTCTTGTCAGTGCTTGACGGTTTTGACAGGCCAGAAAAATCGCAAGTAAAATAGATATATTTGGGCATGAGATGTTGACTTATAATTCATGAAGCTGCAACCTTCCACCTGTAAAGGAGAAGAATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223511417 263 - 227556264 TCTTCAACTTTAGCTTTTACATTTTTAGCAGTAGGTTA-----TAGGTAGGA-----GTCATCTTTGTAATTGACATTTCAACGCAAATTTTCTTCTCATAATTGATAACGACTTCATTCGTGCCAGCTGCAAAACCCAGTGTATTATTCTTGTCAGTGCTTGACGGTTTTGACAGGCCAGAAAAATCGCAAGTAAAATAGATATATTTGGGCATGAGATGTTGACTTATAATTCATGAAGCTGCAACCTTCCACCTGTAAAGGAGAAGAATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16561209 263 - 220367699 TCTTCAactttagcttttacatttttagcagTAGGTTA-----TAGGTAGGA-----GTCATCTTTGTAATTGACATTTCAACGCAAATTTTCTTCTCATAATTGATAACGACTTCATTCGTGCCAGCTGCAAAACCCAGTGTATTATTCTTGTCAGTGCTTGACGGTTTTGACAGGCCAGAAAAATCGCAAGTAAAATAGATATATTTGGGCATGAGATGTTGACTTATAATTCATGAAGCTGCAACCTTCCACCTGTAAAGGAGAAGAATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82360521 263 + 85787240 TCTTCAACTTTAGCTTTTACATTTTTAGCAGTAGGTTA-----TAGGTAGGC-----GTCATCTTTGTAATTGACATTTCAACGCAAATTTTCTTCTCATAATTGATAACGACTTCATTCGTGCCAGCTGCAAAACCCAGTGTATTATTCTTGTCAGTGCTTGACGGTTTTGACAGGCCAGAAAAATCGCAAGTAAAATAGATATATTTGGGCATGAGATGTTGACTTATAATTCATGAAGCTGGAACCTTCCACCTGTAAAGGAGAAGAATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14029881 241 - 49578535 TCTCAAAGTTTAGCTTTTACATTTTTAGCAGTGGGTCA-----TAGGTAGGA-----GTCATCTTGGTAATTGACATTCAAACGCAAATTTTCTTCTCGTAATTGATAACGACTACTTTCGTGCCA----TAAAACCCAGTTGATTGTTCTTGTCAGTGCT------------------GGAAAAATCTCAAGTAAAATAGATACATTTGGGCATGAGATGTTGACTTGTAATTCATGAAGCTGCAGACTTCCACCTGTGAAAGAGAAGGATC i calJac3.chr19 C 0 C 0 s mm10.chr1 178660151 243 + 195471971 CCTTAGACTTTA-CAGTTCCCCTCCCCACAGTAGGTTA-----TAGGTAGAGTAGATATTGTCCTCACCACTGACAATTAAACACAAATTCTTTCCTTGTAACGAATACCCCATTCATCAATGACAG-----GAACCCAGCTGACAACTCCTGTCAGCGTGTGAAAGTTTTGACAGGCTGGAACAGCAATAAAAAAAAT-------------CATGAGACATTGACTTACAATTCATGGAACATCAGCCTTCCACCAGCGAAGAACA------ i mm10.chr1 C 0 C 0 s canFam3.chr7 36231589 265 + 80974532 TCCTAAACTTTAGAGTTGCTCCTTTTAGCAGGAGATTAGGAAGGGGAGAGAA-----GTCATCTTTGTAACTGACA-TTAAACACAGCCTCTCTTCTCCTAATTGGGAAGGACTTCGTGCATGGCAGC-GTGGGATCTACTGTATTATCCCCATCAGTGCTTGATGTTTTTGCCACGCCATGAAAG-CACAAAGGAAATAGATGTACTGGGGCCTGGGCCAGTGTCTGGTGATTCCAGAGGCTACAGCCTTCCACCTGTACCGGACAGGAATC i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140032763 100 - 143122389 M a score=942372.000000 s hg38.chr1_KI270759v1_alt 38100 276 + 425601 GGCAGAGGTATGGTTTTGATTTATGTGTTGAAAG-ACAGA---AAACAAATAAGAAAAC------CTTTGT-----TCTGCTGTCACAA-----------CTGATGAAGGTAACAGTGTTAAAAAATAATGAAATTCACAATACTTCCTACACAT---CCAGTCCTCTGTAGCTGCAATTC-GGGGGGGCC-AAGGGCTTCCTTAGCAGAATCTCTGGGCTTTCTTGGG-GTGCAGGTAGGGCTCTGGCCTTGCTATGCTTTAACTAGAACTACTGTGA--TTTTTT---ttccttccttccctccttcctcc s panTro4.chr1 224778374 278 + 228333871 GGCAGAGGTATGGTTTTGATTTATGTGTTGAAAG-ACAGA---AAACAAATAAGAAAAC------CTTTGT-----TCTGCTGTCACAG-----------CTGATGAAGG-AACAGTGTTAAAAAATAATGAAATTCACAATACTTCCTACACAT---CCAGTCCTCTGTAGCTGCAATTC-GGGGGGGCC-AAGGGCTTCCTTAGCAGAATCTCTGGGCTTTCTTGGG-GTGCAGGTAGGGCTCTGGCCTTGCTATGCTTTAACTAGAACTACTGTGA--Tttttttccttccttccttccctccttcctcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226143207 278 - 229942017 GGCAGAGGTATCGTTTTGATTTATGTGTTGAAAG-ACAGA---AAACAAATAAGAAAAC------CTTTGT-----TCTGCTGTCACAA-----------CTGATGAAGGTAACAGTGTTAAAAAATAATGAAATTCAGAATACTTCCTACACAT---CCAGTCCTCTGTAGCTGCAATTCAGGGAGGGCC-AAGGCCTTCCTTAGCAGAATCTCTGGGCTTTCTTGGG-GTGCAGGTGGGGCTCTGGCCTTGCTATGCTTTAACTAGAATTACTGTGA--TTTtttt--ttccttccttccctccttcctcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140032864 277 - 143122389 GGCAGAGGTATCGTTTTGATTTATGTGTTGAAAG-ACAGA---AAACAAATAAGAAAAC------CTTTGT-----TCTGCTGTCACAA-----------CTGATGAAGGTAACAGTGTTAAAAAATAATGAAATTCAGAATACTTCCTACACAT---CCAGTCCTCTATAGCTGCAATTCAGGGGGGGCC-AGGGGCTTCCTTAGCAGAATCTCTGGGCTTTCTTGGG-GTGCAGGTGGGGCTCTGGCCTTACTCTGCTTCAACTAGAACTACTGTGA--TTTTTT---ttccttccttccctccttcctcc i nomLeu3.chr5 M 100 C 0 s rheMac3.chr1 16749059 279 - 229590362 GGCAGAGGTATCGTTTTGATTTATGTGCTGAAAG-ACAGA---AAACAAATAAGAAAAC------CTTTGT-----TCTGCTGTCACAA-----------CTGATGAAGGTAACAGTGTTAAAAAATAATACAATTCAGAATACTTCATACACAT---CCAGTCCTCTGTAGCTGCAATTCAGGGAGGGCC-AAGAGCTTCCTTAGCAGAATCTCTGGGCTTTCTTGGG-GTGCAGGTGGGGCTCTGGCCTTGCTCTGCTTTAACTAGAACTACTGTGATTTTTTTT---Ttccttccttccctccttcctcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223511680 279 - 227556264 GGCAGAGGTATCGTTTTGATTTATGTGCCGAAAG-ACAGA---AAACAAATAAGAAAAC------CTTTGT-----TCTGCTGTCACAA-----------CTGATGAAGGTAACAGTGTTAAAAAATAATACAATTCAGAATACTTCATACACAT---CCAGTCCCCTGCAGCTGCAATTCAGGGAGGGCC-AAGAGCTTCCTTAGCAGAATCTCTGGGCTTTCTTGGG-GTGCAGGTGGGGCTCTGGCCTTGCTCTGCTTTAACTAGAACTACTGTGAtttttttt---ttccttccttccctccttcctcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16561472 277 - 220367699 GGCAGAGGTATCGTTTTGATTTATGTgctgaaag-acaga---aaacaaataagaaaac------cttTGT-----TCTGCTGTCACAA-----------CTGATGAAGGTAACAGcgttaaaaaataatacaattcaGAATACTTCATACACAT---CCAGTCCTCTGTAGCTGCAATTCAGGGAGGGCC-AAGAGCTTCCTTAGCAGAATCTCTGGGCTTTCTTGGG-GTGCAGGTGGGGCTCTGGCCTTGCTCTGCTTTAACTAGaactactgtga--tttttt---ttccttccttcccttcttcctcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82360784 277 + 85787240 GGCAGAGGTATCGTTTTGATTTATGTGCTGAAAG-ACAGA---AAACAAATAAGAAAAC------CTTTGT-----TCTGCTGTCACGA-----------CTGATGAAGGTAACAGTGTTAAAAAATAATACAATTCAGAATACTTCATACACAT---CCTGTCCTCTGTAGCTGCAATTCAGGGAGGGCC-AAGAGCTTCCTTAGCAGAATCTCTGCGCTTTCTTGGG-GTGCAGGTGGGACTCTGGCCTTGCTCTGCTTTAACTAGAACTACTGTGA--cttttt---ttctttccttccctccttcctcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14030122 270 - 49578535 GGCAGAGGTATCGTTTTGATTTATGTGGTGAAAG-GCAGA---AAACAAACAAGAAAAC------CTTTGT-----TCTGCTGTCACAA-----------CTGATGAAGGTGACAGTGTTAAGAAATAAGACAATTCGGAATACCTCATCCACAT---CCCGGCCTCAGTGGCCGCAATTCGGGGAAGGCC-AAGAGCTTCCTTGGTGGAACCTCTGGGCTCTCTT-GG-GTGCAGCTGGGGCTCTGCCCATGCTCTGCTTTCACTAAAACTACTGTGA---TACTT---ttccttccttccctcctt----- i calJac3.chr19 C 0 C 0 s mm10.chr1 178660394 251 + 195471971 GGTGGAAGTGTGGTTTGGACTTAGGTGGTGGAATCACAAACACAAACAAACAAACAAACAGAAAGCTTTGTCTATCCCAGCTGTCACA-----------------GAGGGTAACAAAGCTACAA--------GACCCAGAA--------------------------GGCAGTGTCTGGCCAGTGGGTGCTGAAGGGGTTCCTTAGTGGAGTCTCTGCATGTTCTTGGGAATCTAGCTATGGCCCTGGTTCTGGCCTGCTCAGGTTGGAATCC--------CTCCCC---ACCTTTCCTTCCCTCCTATCTCC i mm10.chr1 C 0 I 802 s canFam3.chr7 36231854 276 + 80974532 AGCAGAGGCGTGATTCTGATTTACGAGGTGAGAG-CCAGA---AAACAAATAGAAAAGC------CTTTGT-----TCTGTGGTCACGGACAGAACCTCCCTGCTGAAGG---GGGTGTTAAAA---------ATCCAGGATGCTTCCTA-ACACGGGCCAGTCCTCTGT-GCAGGATGACAGGGAGGGCC-AGGGGTGTCC-TGGTGGAATGTCCAGACTTTCTTGGG-GTTCAGGTTGGGATCCGGCCCCACCCTGCTTTAACCAGAACTAATGTAT--GTTGcc---tgccttccttccttccttccttc i canFam3.chr7 C 0 C 0 a score=693888.000000 s hg38.chr1_KI270759v1_alt 38376 297 + 425601 ctgcctcgctgcctccctccctccctcttttctttctttccttctcttttttcctttctttctctccctgtttctctgtctctccttccccctccctgtctccctccctatctctttctttccttttcttttttctctccctgtt----tctctg------tctctcctcccttcctccctctc--tcctttctt------tatttttcttccatctcttaatttcattcattcattAGCCTTCTGTGTAAGATTTTGTTTGG-AAAAAAAAGAGTCATATCCCCCTTTAAAAACAGTTCATAGAAATGTATCCTC s panTro4.chr1 224778652 298 + 228333871 ctgcctCGCTGCctccctccctccctcttttctttccttc--tct-ttttttcctttctttctctccgtgtttctctgtctctccttccccctccctgtctccctccctgtctctttctttccttctcttttttctctccctgtttctctctctg------tctctcctcccttcctccctctc--tcCTTTCTT------TATTTTTCTTCCATCTCTTAATTTCATTCATTCATTAGACTTCTGTGTAAGATTTTGTTTGG-AAAAAAAAGAGTCATATCCCCCTTTAAAAACAGTTCATAGAAATGTATCCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226143485 292 - 229942017 ctgccttgctgcctccctccctccctcttttctt--------tctcttttttcctttctttatctccctgtttctctgtctctccttccccctccctgtctccctccctagctctttctttccttctcttttttctctccctatt--tctctctg------tcgctcctcccctcctccctctc--tcctttctttctttctctTTTTCTTCCGTCTC----TTTCATTCATTCATTGGACTTCTGTGTAAGATTTTGTTTGG--AAAAAAAGAGTCGTATTCTCCTTTAAAAACAGTTCATAGAAATGTATCCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140033141 294 - 143122389 ctgcctcgctgcctcctgccctccctcttttctttctttccttctcttttttcctttctttctctccctgtttctctgtctctccttccccctccctgtctccctccctatctctttctttccttctattttttctctccctgtt----tctctg------tctctcctcccctcctccctctc--tcctttctttctctttctttttcttccatctct--------ttcattcattGGACTTCAGTGTAAGATTTTGTTTGG--AAAAAAAGAGTCATATCTCCCTTTAAAAACAGTTCATAGAAATGTATTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16749338 304 - 229590362 ctgcctcactgcctccttcccttcctcTTTtctttctttccttctcttttttcctttctt----tctctgtttctctgtctctctttccccctccctgtttccctccctatctctctctttccttctcttttttctctccctatt-ttctctctgtgtctctctctcctcccctcctccctctcctttctttctcattctttctttttctTCCATCTC----TTTCATTCATTCATTGGACTTCTGTGTACAATTTTGTTTG---AAAAAAAGGGTCATATCCCCCTTTAAAAACAGTTCATAGAAATGTATCCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223511959 304 - 227556264 ctgcctcactgcctccttcccttcctcttttctttctttccttctcttttttcctttctt----tctctgtttcgctgtctctctttccccctccctgtctccctccctatctctctctttccttctcttttttctctccctatt-ttctctctgtgtctctctctcctcccctcctccctctcctttctttctcattctttctttttcttccatctc----tttcattcattcattGGACTTCTGTGTACAATTTTGTTTG---AAAAAAAGGGTCATATCCCCCTTTAAAAACAGTTCATAGAAATGTATCCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16561749 306 - 220367699 ctgcctcgctgcctccttcccttcctcttttctttctttccttctcttttttcctttctttctctctctgtttctctgtctctccttccccctccctgtctccctccttatctctctctttcct--tcttttttctctccctatt-ttctctctgtgtctctctctcctcccctcctccctctcctttctctctcattctttctttttcttccatctc----tttcattcattcattggacttctGTGTACAATTTTGTTTG---GAAAAAAGGGTCATATCCCCCTTTAAAAACAGTTCATAGAAATGTATCCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82361061 304 + 85787240 ctgcctcgctgcctccttcccttcctcttttctttctttccatctcttttttcctttctt----tctctgtttctctgtctctccttccccctccctgtctccctccttatctctctctttccttctcttttttctctctctatt-ttctctctgtgtctctctctcctcccctcctccctctcctttctttctcattctttctttttcttccatctc----tttcattcattcattGGACTTCTGTGTACAATTTTGTTTG---AAACAAAGAGTCCTATCCCCCTTTAAAAGCAGTTCATAGAAATGTATCCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14030392 216 - 49578535 ----------------ttccctccctgttttctttctttc------ctctttcctttttt-ccctccctgtttctctg--tctccttctgcctccctctctcc-------------------------tttcttctctctctttt----------------------------tcttccatctc-----------------tttcattcattcat-tc----attcattcattcattGGATTTTCGTGTAAGATTTTGTTTGGGGAAAAAGACAGTCTTCTTCCCCTTTAAAAACAGTTCACAGAAATGTACCCTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36232130 155 + 80974532 ---------------cttccttccttccttccttccttcc----------ttccttcctt-----------------------------ccttccttGTctccatctctgtc---------------------tctctccctctc------------------------cccaccttccctccc--ttctttctt-------------------tcTG------------------------TGTATCTACAATTTTGTTTGC--AATAAAAGAGTCCT---CATCGCTAAAAGCAGCTCACAG------------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178660645 802 + 195471971 I a score=52837.000000 s hg38.chr1_KI270759v1_alt 38673 166 + 425601 TAgtagtcccagctgctcgggaggctgaggcaggagagtggcgtgaaccc----ggagggcggagcctgcagtgagccgagatcgcgccactgcactccagcctgggtgactgagctagactccgtct--caaaaaaaaaaaaaaaaaaaaaaaaaaaGGAAATGTATCCTG s panTro4.chr1 224778950 168 + 228333871 TAgtagtcccagctgctcgggaggctgaggcaggagaatggcgtggaccc----cgggggcggagcctgcagtgagccgagatcgcgccactgcactccagcctgggtgactgagctagactccgtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGAAATGTATCCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226143777 165 - 229942017 TAgtagtcccagctgctcgggaggctgaggcaggagaatggcatgaactcgggggggggggggagcctgcagtgagccgagatcgcgccactgcactccagcctgggtgactgagcgagactccatct-------caaaaaaaaaaaaaaaaaaaaaaggaaaTGTATCCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140033435 141 - 143122389 TAgtagtcacagctgcttgggaggctgaggcaggagaatggcgtgaaccc----gggggacggagcctgcagtgagccgagatcgtgccactgcactccagcctgggtgactgagcgagactccgcct-------caaaaaaaa--------------------GTATCCTC i nomLeu3.chr5 C 0 C 0 s canFam3.chr7 36232285 15 + 80974532 --------------------------------------------------------------------------------------------------CAGCT---------------GACCATGTCT-------------------------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178660645 802 + 195471971 I e calJac3.chr19 14030608 0 - 49578535 C e rheMac3.chr1 16749642 0 - 229590362 C e chlSab2.chr25 82361365 0 + 85787240 C e papAnu2.chr1 16562055 0 - 220367699 C e macFas5.chr1 223512263 0 - 227556264 C a score=1539841.000000 s hg38.chr1_KI270759v1_alt 38839 534 + 425601 TACATGAATGTGGATAATGAGCTTTCCT-GGCTGGAAAAGGGCAATCACTCTGGCTTCTGGGATGACCCTGGAGTCCTTCTCTGCTTCAGTAATT----------GCCACACTCCT--------GGGCTCCGCCACTTCTC---TATTGCCCAGTTCTTCTGCTGGGATGCTGGCCTTCCGCCAGGCAGCCTTAGGTTCTGCTTAGACGCACAGATAATCTTTACCAGTGTGTGAGAAGCCTGAGGATACAGACAGACTGCATACCGCGGCCATGTGttgtg---tgagtggtatcaggctggacgta---tcccttgacaacttgactttttagctcacagttacatttttcggactgatctacgttgattcgtgGAAAAACAGGTGATACCGCTTCTTTCCTTCTATCCCCCGGCT-------TCAGTTGAGTTCATTCTAT---------ACCCCACCCGATGCCTCCGCGTACACACTGTAGCTAATTCTGCAGGAGATGGAGGGTTCCATGGTATCTTCACACGTGGAGATGGCACTACATTCGTATTCTGAGCTATTCCCCAGCAGCAAGGG s panTro4.chr1 224779118 534 + 228333871 TACATGAATGTGGATAATGAGCTTCCCT-GGCTGGAAAAGGGCAATCACTCTGGCTTCTGGGATGACCCTGGAGTCCTTTTCTGCTTCAGTAATT----------GCCACACTCCT--------GGGCTCCGCCACTTCTC---TATTGCCCGGTTCTTCTGCTGGGATGCTGGCCTTCCGCCAGGCAGCCTTAGGTTCCGCTTAGACGCACAGATAATCTTTACCAGTGTGTGAGAAGCCTGAGGATACAGACAGACTGCATACCGCGGCCATGTGttgtg---tgagtggcatcaggctggacgta---tcccttgacaacttgactttttagctcacagttacatttttcggactgatctacgttgattcgtgGAAAAACAGGTGATACCGCTTCTTTCCTTCTATCCCCCGGCT-------TGAGTTGAGTTCATTCTAT---------ACCCCACCCGATGCCTCCGCATACACACTGTAGCTAATTCTGCAGGAGATGGAGGGTTCCATGGTATCTTCACACGTGGAGATGGCACTGCATTCATATTCTGAGCTATTCCCCAGCAGCAAGGG i panTro4.chr1 C 0 I 824 s ponAbe2.chr1 226143942 534 - 229942017 TACATGAATGTGGATAATGAGCTTCCCT-GGCTGGAATAGGGCAATCACTCTGGCTTCTGGGATGACCCTGGAGTCCTTTTCTGCTTCAGTAATT----------GCCACACTCCT--------GGGCTCCACCTCTTCTC---TATTGCCCAGTTCTTCTGCTGGGATGCTGGCCTTCCGCCAGGCAGCCTTAGGTTCCGCGTAGACGCACAGATAGTCTTTACCAGTGTGTGAGAAGCCTGAGGATACAGACAGACTGCATACCGCGGCCATGTGTTGTG---TGAGTGGTATCAGGCTGGACATA---CCCCTTGACAACTTGACTTTTTAGCTCACAGTTACATTTTTCGGACAGATCTATGTTGATTCGTGGAAAAACAGGTGATACCGCTTCTTTCATTCTATCCCCCGGCT-------TGAGTTGAGTTCATTCTAT---------ACCCGACCCTTTGCCTCCACATACACACTGTAGCTACTTCTGCAGGAGATGGAGGGTTCCATGGTGTCTTCACACGTGGAGATGGCACTACGTTCATATTCTGAGCTATTCCCCAGCAGCAAGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140033576 526 - 143122389 TACAGGAATGTGGATAATGAGCTTCCCT-GGCTGGACTAGGACAATCACTCTGGCTTCTGGGACGACCCTGGAGTCCTTTTCTGCTTCAGTAATT----------GCCACACTCCT--------GGGCTCCACCACTTCTC---GATTTCCCAGTTCTTCTGCTGGGGTGCTGGCCTTCCGCCAGGCAGCCTCAGGTTCCGCTTAGACGCAC----AATCTTTACCCGTGTGTGAGAAGCCTGAGGATAC--ACAGA-TGCATACCGCGGCCACGGGTTGTG---TGAGTGGTATC-GGCTGGACATA---GCCGTTGACAACTTGACTTTTTAGCTCACAGTTACATTTTTCGGACTGATCTATGTTGATTCGTGGAAAAACAGGTGATACCGCTTCTTTCATTCTATCCCCCGGCT-------TGAGTTGAGTTGATTCTAT---------ACCCCACTCGATGCCTCCGCATATACACTGTAGCTACTGCTGCAGGAGATGGAGGGTTCCATGGTATCTTCACACGTGGAGATGGCACCACATTCATGTTCTGAGCTATTCCCCAGCAGCAAGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16749642 535 - 229590362 TACAGGAATGTTGATAATGAGCTTCCCTGGGCTGGAATAGGGCTATCACTCTGGCTTCTTGGATGACCCTGGAGTCCTTTTTTGCTTCAGTAATT----------GCCACACTCCT--------GGGCTCCACCCCTTCTC---TATTTCCCAGTTCTTCTGCTGGGATGCTGGCCTTCCGCCAGGCGGCCTTAGGTTCCGCTTAGACGCACAGATAATCTTTACCAGTGTGTGAGAAGCTGGAGGATACAGACAGACTGCATACCGCAGCCATGTGCtgtg---tgagtggtatcgggctgggcata---tcccttgacaacttgactttttagctcacagttatatttttcggaccgatctatgttgattcgtgGAAAAACAGGTGATACTGCGTCTTTCATTCTATCCCCCGGCT-------TGAGTTGAGTTCATTCTCT---------ACCTCACCCGATGCCTCCACATCCACACTGTAGCTGCTTCTGGAGGAGATGGAGGGCTCCATCGTATCTTTACACATGGAGATGGCACTACATTCATATCCTGAGCGGTTCCCCAGCAGCAAGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223512263 535 - 227556264 TACAGGAATGTTGATAATGAGCTTCCCTGGGCTGGAATAGGGCTATCACTCTGGCTTCTTGGATGACCCTGGAGTCCTTTTTTGCTTCAGTAATT----------GCCACACTCCT--------GGGCTCCACCCCTTCTC---TATTTCCCAGTTCTTCTGCTGGGATGCTGGCCTTCCGCCAGGCGGCCTTAGGTTCCGCTTAGACGCACAGATAATCTTTACCAGTGTGTGAGAAGCTGGAGGATACAGACAGACTGCATACCGCAGCCATGTGCtgtg---tgagtggtatcgggctgggcata---tcccttgacaacttgactttttagctcacagttatatttttcggactgatctatgttgattcgtgGAAAAACAGGTGATACTGCGTCTTTCATTCTATCCCCCGGCT-------TGAGTTGAGTTCATTCTCT---------ACCCCACCCGATGCCTCCACATCCACACTGTAGCTGCTTCTGGAGGAGATGGAGGGCTCCATCGTATCTTTACACATGGAGATGGCACTACATTCATATCCTGAGCGGTTCCCCAGCAGCAAGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16562055 532 - 220367699 TACAGGAATGTTGATAATGAGCTTCCCTGGGCTGGAATAGGGCCATCACTCTGGCTTCTTGGATGACCCTGGAGTCCTTTTTTGCTTCAGTAATT----------GCCACACTCCT--------GGGCTCCACCCCTTCTC---TATTTCCCAG---TTCTGCTGGGATGCTGGCCTTCCGCCAGGCGGCCTTAGGTTCCGCTTAGACGCACCGATAATCTTTACCAGCGTGTGAGAAGCTGGAGGATACAGACAGACTGCATCCCGCAGCCATGTGCTGTG---TGAGTGGTATCAGGCTGGACATA---TCCCTTGACAACTTGACTTTTTAGCTCACAGTTACATCTTTCGGACTGATCTATGTTGATTCGTGGAAAAACAGGTGATACTGCGTCTTTCATTCTATCCCCCGGCT-------TGAGTTGAGTTCATTCTCT---------ACCCCACCCGATGCCTCCACATCCACACTGTAGCTGCTTCTGGAGGAGATGGAGGGCTCCATTGTATCTTAACACATGGAGATGGCACTACATTCATATCCTGAGCGGTTCCCCAGCAGCAAGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82361365 533 + 85787240 TACAGGAATGTTGGTAATGAGCTTCCCTGGGCTGGAATAGGGCCATCACTCTGGCTTCTTGGATGACCCTGGAGTCCTTTTTTGCTTC--TAATT----------GCCACACTCCC--------GGGCTCCACCCCTTCTC---TATTTCCCGGTTCTTCTGCTGGGACGCTGGCCTTCCGCCAGGCAGCCTTAGGTTCCACTTAGACGCACCGATGGTCTTTACCAGCGTGTGAGAAGCTCAAGGATACAGACAGACTGCATGCCGCAGCCACGCGCTGTG---TGAGTGGTATCGGGCTGGACATA---TCCCTTGACAACTTGACTTTTTAGCTCACAGTTACATTTTTCGGACTGATCTCTGTTGATTCGTGGAAAAACAGCTGATACTGCGTCTTTCATTCTATCCCCCGGCT-------TGAGTTGCGTTCATTCTCT---------ACCCCACCCGATGCCTCCACATCCACACTGTAGCTGCTTCTGGAGGAGGTGGAGGGCTCCATCGTATCTTTACACATGGAGATGGCACTACATTCATCTCCTGAGCGGTTCCCCAGCAGCAAGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14030608 509 - 49578535 CACAGGAATGTGGAGAATGAGCTTCCCTGGGCCG-----------------------TGTGGACGATCCCGGAGACCTCTTCCGCTTCAGTAATT----------GCCACACGCCT--------GGGCTCCACCACTTCTCAGAGGTTTCCCAG---TTCTGCTGGCATGCTGGCCTTCTGCCAGGCAGCCTTAGGTTCCGCTTAGACGCACAGATAATCTTTATCAGCGTGTGAGAAACTTTAGCACACGGACGGACCGCATACCGTGGCCATGTGT--GC---TGAGCGCCGTCATTCCGGATGGC---TCCCTGGACAACTTGACTTTTT-------AGTTGTATTTTTCCGACTGATCT--GTTGATTCCCGGAGAAGCAGGTGGTACTGTTTCCTTCATGCTGTGCCCCAGCT-------TGAGTTG-GTTCCCTCCACCCTCGCCCAGCCCCACCCGATGCCTCCGCATACACACTGCGAGGAATTCTGGAGGAGATGGCAGGTTCCACTGCGTCTTCATAGGTGGAGGTGGCACTGTGTTCCTGTTCTGAGCTATTCCCCAGCAGCAAGAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36232300 523 + 80974532 ----GGAATGTTAGTAATGAGCCCTCCTGTGTGGAGCTAGGGTGACCCTGCTGGTGACCTGGAGGATCTTGGAGTCCTTTGCTAGTTCAGCAACTCTGGACTCAATCCCCACTCCTACCATACCAGCTTCCAGCCTATCCCCTGCACTTCGAGGGT-TTCTGTGGGCACGCTGGCTCTCCGTCAGCGAGCATTGTTTTCTACTTAGATGCACAGGTAATC-CTACCCGTGCGTGAGGGACGTCATG-------------GCATGTTCTGGCCACGTGTTTTGCTTTAAGTGGTATCATGCTAGGAGTGGTCTCCTTCTGCAGCTC------------CAAAATTCAATTTTTCAGATCTGCTCATATCGACGC-------AGTAGATGACTCTGCTCCTTACATTCTCTCCCTGGGGTACCCCTGCCGGCCCCTTCCATCCCAT---------CCCCATCCCCGTG--TGTACACGCACACT-TAGCTACTTCTGGAGGAGATGGATGGGTCAGTCATATCTTTACATGTCAAGGTCGCACTGT----CTAACCTGGGCCTGTCCCT-GCAGGGATGG i canFam3.chr7 C 0 C 0 e mm10.chr1 178660645 802 + 195471971 I a score=4608.000000 s hg38.chr1_KI270759v1_alt 39373 2 + 425601 TA s ponAbe2.chr1 226144476 2 - 229942017 TA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140034102 2 - 143122389 TA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16750177 2 - 229590362 TA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223512798 2 - 227556264 TA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16562587 2 - 220367699 TA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82361898 2 + 85787240 TA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14031117 1 - 49578535 -A i calJac3.chr19 C 0 I 1 s canFam3.chr7 36232823 2 + 80974532 TG i canFam3.chr7 C 0 C 0 e mm10.chr1 178660645 802 + 195471971 I e panTro4.chr1 224779652 824 + 228333871 I a score=71785.000000 s hg38.chr1_KI270759v1_alt 39375 30 + 425601 AATTTTCTTCTCTTGCATTCTCTCGCTCAG s panTro4.chr1 224780476 30 + 228333871 AATTTTCTTGTCTTGCATTCTCTCGCTCAG i panTro4.chr1 I 824 C 0 s ponAbe2.chr1 226144478 30 - 229942017 AGTTTTCTTCTCTTGCATTCTCTCGCTCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140034104 30 - 143122389 AGTTTTCTTCTCTTGCATTCTCTCGCTTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16750179 30 - 229590362 AGATTCCTTCTCTTGCATTCTCTTGCTCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223512800 30 - 227556264 AGATTCCTTCTCTTGCATTCTCTTGCTCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16562589 30 - 220367699 AGATTTCTTCTCTTGCATTCTCTTGCTCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82361900 20 + 85787240 AGTTTCC----------TTCTCTTGCTCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14031119 20 - 49578535 CGTTTCC----------TTCTCCTGCTCAG i calJac3.chr19 I 1 C 0 s canFam3.chr7 36232825 30 + 80974532 AGCTTCTCTGTCTTGGGCTGCCTTGCTCAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178660645 802 + 195471971 I a score=346755.000000 s hg38.chr1_KI270759v1_alt 39405 128 + 425601 TCAACCTTGTGACCATTGACTCATATTTGAATGTCATGTTTGGGCCATAGGCGCAAGTGAGGAGATGCTCACGCTGGTTACCTTGCAGGTGT--TTTCTATAATG------------AAGAGCCCACAAgccctca------ccccac s panTro4.chr1 224780506 128 + 228333871 TCAACCTTGTGACCATTGACTCATATTTGAATGTCGTGTTTGGGCCATAGGCGCAAGTGAGGAGATGTTCACGCTGGTTACCTTGCAGCTGT--TTTCTCTAATG------------AAGAGCCCACAAgccctca------ccccac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226144508 127 - 229942017 TCAACCTTGTGACCATTGACTCATATTTGAATGTCATGTTTGGGCCACAGGCGCAAGTGAGGAGATGTTCACGCTGGTTACCTTGCTGGTGT--TTTCTATAATG-------------AGAGCCCACAAgccctca------ccccac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140034134 128 - 143122389 TCAACCTTGTGACCATTGACTCATATTTGAATGTCATCTTTGGGCCATAGGCGCAAGTGAGAAGATGTTCACGCTAGTTACCTTGCTGGCGT--TTTGTGTAACG------------AAGAGCCCACAAgccctca------ccccac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16750209 134 - 229590362 TCAACCCTGTGACCATTGACTCATATCTGAATGTCATCTTTGGGCCACAGGCGCAAGTG---AGATGTTCA-GGTAATTACCTTGGTGGTGT--TCTTTATAATGAAGAGGGCACCTAAGAGCCCACAAgccctca--------ccac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223512830 134 - 227556264 TCAACCCTGTGACCATTGACTCATATCTGAATGTCATCTTTGGGCCACAGGCGCAAGTG---AGATGTTCA-GGTAATTACCTTGGTGGTGT--TCTTTATAATGAAGAGGGCACCTAAGAGCCCACAAgccctca--------ccac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16562619 134 - 220367699 TCAACCCTGTGACCATTGACTCATATCTGAATGTCATCTTTGGGCCACAGGCGCAAGTG---AGATGCTCA-GGTAATTACCTTGGTGGTGG--TCTTTATAATGAAGAGGGCACCTAAGAGCCCACAAGCCCTCA--------CCAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82361920 143 + 85787240 TCAACCCTGTGACCATTGACTCATATCTGAATGTCATCTTTGGGCCACAGGCGCAAGTG---AGATGGTCACGTTAATTACCTTGGTGGTGT--TTTGTATAATGAAGAGGGTACCTAAGAGCCCGCAAGCCCTCACccctaccccac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14031139 138 - 49578535 TCAACCTCCTGACAACTGACTTCTATTTGAATGGCATCTTTGCGCCATAGATGCAAGGG---AGATGATCAAGCTAATTACCTCGGTGGTGTAGTTTTTATAATGAAGAGGGTACCCGAGAGCCCAC-AGCCCTCA------CCCCAC i calJac3.chr19 C 0 I 8141 s mm10.chr1 178661447 137 + 195471971 TCAGCCTT-TGACCATGGACGTATATCTGAATGTCCTGTGTTGGCTGTTGACTGGAGGGAAAAGAGGCTCAAAGCAATTACCTTAGCTTTGC--TTTTTACATTAAAGATGGGGTG-AGGTGTCCAT-Ggtcctca------ctctgt i mm10.chr1 I 802 C 0 s canFam3.chr7 36232855 126 + 80974532 TGGGCCTTGTGACC-------TGCATTTGAAAGTCACCTGT--GCTGTAGACTCCAGAGGAAAGAGGTTCAGGCTGACTCCCTTGGCTTTCTCATTTTCATAACAAAGAGGGGCCCT----GTCCAG----CTTCA-----TCCCCAC i canFam3.chr7 C 0 I 5 a score=804680.000000 s hg38.chr1_KI270759v1_alt 39533 296 + 425601 ccctgccctacccgcagctggagtgaaggtggcgccccagaggccactcctgggagaaacctcatcccctccctccttctgcgacttcacagcctc-acac-acagttgtctgggaaacatcagatctaaccacctcgagccttgcgtctctgtttatgcctctcccaacaggaagct-gagactcggaaaatcctcgt-ccccctccgcacctctctcctactcaccacgcctttccacgggaacacacagcacgttatcagcaaaattccccacaccctcagcgcctttcctgagagg s panTro4.chr1 224780634 296 + 228333871 ccctgccctacccgcagctggagtgaaggtggcgccccagaggccactcctggtagaaacctcatcccctccctccttctgcgacttcatagcctc-gcac-atagttgtctgggaaacatcagatctaaccaccgcgagccttgcgtctctgtttatgcctctcccaacaggaagct-gagactcgggaaatccttgt-ccccctccgcacctctctcctactcaccacgcctttccatgggaacacacagcacgttatcagcaaaattccccacaccctcagcgcctttcctgagagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226144635 297 - 229942017 ccctgccctaccagcagctggagtgaaggtggcgccccagaggccactcctggtagaaacctcatcccctccctccttctgcaacttcatagcctc-acac-acagttgtctgggaaacatcagatctgagcactgcgagccttgtgtctctgtttatgcctctcccaacaggaagcc-gggactccggaaatccttgtcccccctccgcacctctctcttactcaccacgcctttccattggaacacacagcacgttatcagcagaattccctacaccctcagcgcctttcctgagagg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140034262 294 - 143122389 ctctgccctaccagcagctggagtgaaggtggcgtcccagaggccatgcctggttgaaatctcatcccctccctccttctgcaacttcatagcctc-acac---aattgtctgggaaacatcagatctgagcactgcgagccttaagtccctgtttatgcctctcctcacgggaagct-gggactcgggaaatccttgt-ccccctccacacctctctcctactcaccacgcctttccattggaacacacagcatgttatcagcagaattccctacaccctcagtgcctttcctgagagg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16750343 296 - 229590362 ctctgccttaccatcagctagagtgaaggtggcgccccagaggccactcctggtagaaacctcatcccctccttccttctgcaacttcataggctc-acag-acggttgtctggaaaacgtcagacctgagcaccgcgagccttgcgtctccccttagggctctcctcataggaagcc-gggactcgggaaatccttgt-ccccctccgcacctgtctcctactcacaacgcctttccattggaacacacagcacgttatcagcgaaattccctacaccctcagcgcctttcctgagagg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223512964 296 - 227556264 ctctgccttaccatcagctagagcgaaggtggcgccccagaggccactcctggtagaaacctcatcccctccctccttctgcaacttcataggctc-acag-acggttgtctggaaaacgtcagacctgagcaccgcgagccttgcgtctccccttagggctctcctcataggaagcc-gggactcgggaaatccttgt-ccccctccgcacctgtctcctactcacaacgcctttccattggaacacacagcacgttatcagcgaaattccctacaccctcagcgcctttcctgagagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16562753 294 - 220367699 TTCTGCCTTACCATCAGCTAGAGTGAAGGTGGCGCCCCAGAGGCCGCTCCTGGTAGAAACCTcatcccctccctccttctgcaACTTCATAGCCTC-ACAG-ACGGTTGTCTGGAAAACATCCGACCTGAGCACCGCGAGCCTTGCGTCTCCGCTTAGGG--CTCCTCATAGGAAGCC-GGGACTCGGGAAATCCTTGT-CCCCCTCCGCACCTGTCTCCTACTCACAACGCCTTTCCATTGGAACACACAGCACGTTGTCAGCGAAATTCCCTACACCCTCAGCGCCTTTCCTGAGAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82362063 295 + 85787240 ctctaccttaccatcagcaggagtgaaggtggcgccccagaggccactcctggtagaaacctcatcccctccctccttctgcaacttcatagcctc-acac-acagttgtctggaaaacatcagacctgagcaccgcgagccttgcgtctctgcttgtgtctctcctcataggaagcc-gggactcaggaaatcctcgt-ccccctccgcacctgtctcctactcacaacgcctttccattggaacacacagcacgttatc-gcgaaattccctacaccctcagcgcctttcctgagagg i chlSab2.chr25 C 0 C 0 s mm10.chr1 178661584 289 + 195471971 ctgcatcctgtcttcagtttgtgtgaagatggaa-cccagagccccttcctgctggggacc----cctctcctccctcctatcacctcttagcctctactg-acagttgtctggggaatgtcaggactcggcacagcaagcctttcatccctgcctgtgcctcttgtcacaggaagct-ggaggttgggtcagttgtca-tctgctctctacatcccaactgcttactgtgacagcgc---ggaatgcacattccattatcagagaaagtctcagtgcctttggcctttcttctgtgaga i mm10.chr1 C 0 C 0 s canFam3.chr7 36232986 253 + 80974532 CTCCACCCTACCATCAGCTGG-------------------------CTCTGGGCAGGAAC-----CCCTTCCTCCCTTCTGAAACCCCAGAGCCTC-ACCCCACAGCTGTCTGGGAAACATCA-----AAACACAACCAGCCCTTTCTCCCAGGTTCTGCCTCTCATTGCAAGAGGCCAAGGGCTCGGGAAATCCT-AC-GTCCCTCCACACAGCTCCCCTACT---------TTTTCAGTAGAACTCCAAGTCTGTTTTCAGCACAACTCCCTACACTCTCAGCCTCTTTTCTGAGAGG i canFam3.chr7 I 5 C 0 e calJac3.chr19 14031277 8141 - 49578535 I a score=7872.000000 s hg38.chr1_KI270759v1_alt 39829 4 + 425601 tcct s panTro4.chr1 224780930 4 + 228333871 tcct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226144932 4 - 229942017 tcct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140034556 3 - 143122389 t-ct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16750639 4 - 229590362 tccT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223513260 4 - 227556264 tcct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16563047 4 - 220367699 TCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82362358 4 + 85787240 tcct i chlSab2.chr25 C 0 C 0 s mm10.chr1 178661873 4 + 195471971 gcct i mm10.chr1 C 0 I 375 e canFam3.chr7 36233239 0 + 80974532 C e calJac3.chr19 14031277 8141 - 49578535 I a score=1174867.000000 s hg38.chr1_KI270759v1_alt 39833 524 + 425601 cgtgatggtgtggatctgtgtccc------------------------------tgcccacatctcatgttcagttgtgatcccagcgtgggaggtggggcctggtgggaggtggctggatctcgggggtggtttctcacgaatggctaagcaccgttccccttgctgctgttctcgtgatagtgagtgagttctcgtgagatctggttgtttacaagtgtgtggcgcctccttccttgctctttcttgctcctgctttcacggtgtaaactgcctgctcccactttgccttctgccgcgattggaagctgcctgaggcctccccagaagcagatgccaccatgcttcctggacagcctgtagaaccgtgcgccagtgaaacctctcttcttgtaaattccccagtctcaggtatttctttttctttctttctttc----tttttttttttttttgagacagagttttaccctgtttcccaggctgaagtgcagtggcatgatctcggctcactgcaacttctgccccctgggttcaagcgattctcctgcctcagcc s panTro4.chr1 224780934 528 + 228333871 cgtgatggtgtggatctgtgtccc------------------------------tgcccaaatctcatgttcagctgtgatcccagcgtgggaggtggggcctggtgggaggtggctggatctcgggggtggtttctcatgaatggctaagcaccgttccccttgctgctgttctcgtgatagtgagtgagttctcgtgagatctggttgtttacaagtgtgtggcgcctccttccttgctctttcttgctcctgctttcacggtgtaaactgcctgctcccactttgccttctgccgtgattggaagctgcctgaggcctccccggaagcagatgccaccatgcttcctggacagcctgtagaaccgtgagccagtgaaacctctcttcttgtaaattccccagtctcaggtatttctttttctttctttctttctttttttttttttttttttgagacagagttttaccctgtttcccaggctgaagtgcagtggcatgatctcggctcgctgcaacttctgccccctgggttcaagcgattctcctgcctcagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226144936 513 - 229942017 cgtgatgctgtggatctgtgtccc------------------------------tgcccaaatctcatgttcggttgtgatcccagcgtgggaggtggggcctggtgggagatggctggatctcgggggtggtttctcatgaatggctgagcaccgttccccttgctgctgttctcctgatagtgagtgagttcttgtcagatctggttgtttacaagtgtggggcgcctccttccttgctctgtcttgctcctgctttcgccgtgtaaactgcctgctcccactttgccttctgccatgattggaagctccctgaggcctccccagaagcagatgcaacgatgcttcctggacagcctgcagaaccgtgagccagtgaaacctctcttcttgtaaattccccagtctcaggtatttctttttttt--------------tttttttttttttttgagac-gagttttacactattgcccaggctggagtgcagtggcacaatctcggctcactgcaacttctgccccccgggtccaagcgattctcctgcctcagcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140034559 493 - 143122389 cgtgatggtgtggatctgtgtccc------------------------------tgcccaaatctcatgttcagctgtgatcccagcatgggaggtggggcctggtgggaggtggctggatctcgggggtggtttctcatgaatggctaagcaccgttccccttgctgctgttctcgtgat----agtgagttctcgtgagatctggttgtttacaagtgtgtggcgcctccttccttgctctctcttgctcctgctttcaccgtgtaaactgcctgctcccactttgccttctgccatgatgggaagctccctgaggcctccgcagaagcagatgccaccgtgcttcctggacagcct-cagaaccgtgagccagtgaaacctc---tcttgttaattccccagtctcaggt---------------------------tttgtatttttttttgagacagagttttactctgtttcccaggctggagtgcagtggcacgatctcggctcactgcaacttctgccccctgggttcaagtgattctcctgcctcagcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16750643 547 - 229590362 CGTGatggtgtggatctgtgtccctgcccaaatctcatgttccgttgttttttttgcccaaatctcatgttccgttgtgatcccagcgtgggaggtggggcctggtgagaggtggctggatcatgggggc-gtttctcatgaatggctaagcaccgttccccttggtgctgttctcgtgatagtgagtgagttctggtgagatctggttgtttacaagcgtgtggcgcctccggccttactctctcttgctcctgctttcaccgtgtaagctgtcttctcccagtttgccttctgccgtgactggaagctccctgaggcctccccagaagcagatgccaccatgcttcctggacaacctgcagagcagtgagccagtgaaacttctcttcttgtaaattccccagtctcaggtatttcttttcttctttt----------ttttttttcttttttgagacagagttttactccgtcgcccaggctggagtgcagtggcgcgatctcagctcactgcaacttctgtcccctgggttcaagcgattctcctgcctcagcc i rheMac3.chr1 C 0 I 1835 s macFas5.chr1 223513264 516 - 227556264 cgtgatggtgtggatctgtgtccc------------------------------tgcccaaatctcatgttccgttgtgatcccagcgtgggaggtggggcctggtgagaggtggctggatcatgggggc-gtttctcatgaatggctaagcaccgttccccttggtgctgttctcgtgatagtgagtgagttctggtgagatctggttgtttacaagcgtgtggcgcctccggccttactctctcttgctcctgctttcaccgtgtaagctgtctcctcccagtttgccttctgctgtgactggaagctccctgaggcctccccagaagcagatgccaccatgcttcctggacaacctgcagagcagtgagccagtgaaacctctcttcttgtaaattccccagtctcaggtatttctttttttc-ttt----------ttttttttcttttttgagacagagttttactccgtcgcccaggctggagtgcagtggcgcgatctcagctcactgcaacttctgtcccctgggttcaagcgattctcctgcctcagcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16563051 515 - 220367699 CGTGATGGtgtggatctgtgtccc------------------------------tgcccaaatctcatgttccgTTGTGATCCCAGcgtgggaggtggggcctggtgagaggtggctggatcatgggggc-gtttctcatgaatggctaaGCACCgttccccttggtgctgttctcgtgatagtgagtgagttctggtgagatctggttgtttacaagCGTGTGGCGCCTCTGGCCttactctctcttgctcctgctttcaccgtGTAAGCTGTCTCCTCCCagtttgccttctgccgtgactggaagctccctgaggcctccccagaagcagatgccaccatgcttcctggacaacctgcagaacagtgagccagTGAAACCTCTCTTCTTgtaaattccccagtctcaggtatttctttttttc--tt----------ttttttttcttttttgagacagagttttactccatcgcccaggctggagtgcagtggcacgatctcagctcactgcaacttctgtcccctgggttcaagcgattctcctgcctcagcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82362362 510 + 85787240 cgtgatggtgtggatctgtgtccc------------------------------tgcccaaatctcgtgttccgttgtgatcccagcgtgggaggtggggcctggtgagaggtggctggatcatgggggc-gcttctcatgaatggctaagcaccgttccccttggtgctgttctcgtgctagtgagtgagttctggtaggatctggttgtttacaagcgtgtggtgcctccggccttgctctttcttgctcctgctttcactgtgtaaactgcctgttcccagtttgtcttctgccgtgattggaagctccctgaggcctccccagaagcagatgccaccatgcttcctggacaacctgcagaacagtgagccagtgaaacctctcttcttgtaaattccccagtctcaggtatttctttttttc---------------tttttttcttttttaagac--agttttactctgtcgcccaggctggagtgcagtggcacgatctcagctcactgcaacttctgccccccgggttcaagcgattctcctgcctcagcc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178661877 375 + 195471971 I e canFam3.chr7 36233239 0 + 80974532 C e calJac3.chr19 14031277 8141 - 49578535 I a score=398811.000000 s hg38.chr1_KI270759v1_alt 40357 233 + 425601 tcccgagtagccgggattacaggcacctgccaccacacctggctaatttttttttgt-------gtgtgtgt-atttttagtagagtcagggtttcaccatcttggccaggctggtcttgaactcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggataacaggcgtgagccaccgcacctggccctcaggta-tttttttatagcaatgcaagaacagactaatacagt s panTro4.chr1 224781462 233 + 228333871 tcctgagtagccgggattacaggcacctgccaccacacctggctaattttttttttt-------ttttttgt-atttttagtagagtcagggtttcaccatcttggccaggctggtcttgaactcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggataacaggcgtgagccaccgcacctggccctcaggta-tttttttatagcaatgcaagaacagactaatacagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226145449 227 - 229942017 ttcctagtagctgggattacaggcacctgccaccacacctggctaatttttttt-------------tttgt-atttttagtagagtcagggtttcaccatcttggccaggctggtcttgaactcctgaccttgtgatccacccaccttggcctcccaaagtgctgggataacaggtgtgagccaccacacctggccctcaggta-tttctttatagcaatgcaagaacagactaatacagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140035052 235 - 143122389 tcccgagtagccaggattacaggcacctgccaccacagctggctacttttttttttt-------ttttttttaatttttagtagagtcagggtttcaccatcttggctaggctggtcttgaactcctgacctcgtgatctacctgcctcggcctcccaaaatgctgggataacaggcgtgagccaccgcacctggccctagggtattttttttacagcagtgcaagagcagactaatacagt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223513780 235 - 227556264 tcccgagtagctgggattaca-gcacctgccaccacacctggctaattttttttttc----tttttttttgt-atttttagtagagtcagggtttcaccatcttggccaggctggtcttgaactcctgacctcgtgatccacccgccttgacctcccaaagtgctgggataacaggcgtgagccactgcacctggccctcaggta-tttctgtatagcaatgcaagaacagactaatacagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16563566 236 - 220367699 tcccgagtagctgggattaca-gcacctgccaccacacctggctaattttttttttc---ttttttttttgt-atttttagtagagtcagggtttcaccatcttggccaggcgggtcgtgaactcctgacctcgtgatccacccaccttgacctcccaaagtgctgggataacaggcgtgagccactgcacctggccctcaggta-tttctgtatagcaatgcaagaacagactaatacagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82362872 239 + 85787240 tcctgagtagctgggattaca-gcacctgccaccgcacctgactaatttttttttctttttcttttttttgt-atttttagtagagtcagggtttcaccatgttggccaggctggtcttgaactcctgacctcgtgatccacccaccttgacctcccaaagtgctgggataacaggcgtgagccactgcacctggccctcaggta-tttctgtatagcaatgcaagaacagactaatacagt i chlSab2.chr25 C 0 C 0 e mm10.chr1 178661877 375 + 195471971 I e canFam3.chr7 36233239 0 + 80974532 C e calJac3.chr19 14031277 8141 - 49578535 I e rheMac3.chr1 16751190 1835 - 229590362 I a score=1442720.000000 s hg38.chr1_KI270759v1_alt 40590 854 + 425601 ccctttaccttatcttcctaactgctccccgaagtcctctcaagccacatctgctttgt------ccccacaccctgaaccaccacgtttggtgctagcgcctc---atcactgctccatgatcatccttccctcctcctggagacccctggctttgcatctctggccaccagatcattgttgcagtcatctattcatctctgatcc---atgccaccttgttccttgtggattga-----------------------------------cgctcctggagtgctatcagtacaccaaccctacttgtcagacagtaacacctgtgattt-------------------------------------------------------cagtgttcttgtagacaatcctt-cg---------gtactctggcttctcaggtccttaatctcc------------------------------tcttctccgatgaccttgttcttcactcaacctcagccccccatttccgt--aactataccctagagcttattaccggttgtaaagactgataatgcagtcattatctgtta-tgctccagctccatcatctcatttcaagcatcccattctctgatcaccacctctttcttc-----tctcctaaaaccttgactgaaaacaattcttccacctcactgaagtgcaaaatccatccatcctatcatcttttccccctttctcacctacctcatgtcttcatgtctctcattgtctagtttggagtccttgattatct-----aatcattaccttgctttactatcttataacattaacttctttacccatctctctcttcatcccactctccttgcaaaactacagccttggtaaaatccagttgcccatgtcctctgtacctgtctgtgcccagctgagcctgggtggaacagaacac--agccgtggtgactgtttccagtttatgaccattaacttctagtgggct s panTro4.chr1 224781695 855 + 228333871 ccctttaccttatcttcctaactgctccccgaagtcctctcaagccacatctgctttgt------ccccacaccctgaaccaccacgtttggtgctagcgcctc---atcactgctccatgatcatccttccctcctcctggagacccctggctttgcatctccggccaccagatcattgttgcagtcatctattcatctctgatcc---atgccaccttgttccttgcggattga-----------------------------------cgctcctggagtgctatcagtacaccaaccctacttgtcagacagtaacacctgtgattt-------------------------------------------------------cagtgttcttgtagacaatcctt-cg---------gtactctggcttctcaggtccttaatctcc------------------------------tcttctccgatgaccttattcttcactcaacctcagccacccatttccgt--aactataccctagagcttattaccggttgtaaagactgataatgcagtcattatctgttactgctccagctccatcatctcatttcaagcatcccattctctgatcaccacctctttcttc-----tctcctaaaaccttgactgaaaacaattcttccacctcactgaagtgcaaaatccatccatcctatcatcttttccccctttctcacctacctcatgtcttcatgtctctcattgtctagtttggagtccttgattatct-----aatcattacctggctttactatcttataacattaacttctttacccatctctctcttcatcccactctccttgcaaaactacagccttggtaaaatccagttgcccacgtcctctgtacctgtctgtgcccagctgagcctgggtggaacagaacac--agccatggtgactgtttccagtttatgaccattaacttctagtgggct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226145676 866 - 229942017 ccctttaccttatcttcctaactgctccccgaagtcctctcaagccacatctgc-ttgt------ccccacacgctgaaccactgcgtttggtgctagctcctt---atcactgctccacgatcatctttccctcctcctggagacccctggctttgcatctcaggccgccagatcattattgcagtcatctattcatctctggtccataataccaccttgttccttgcggatcgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttctcagatgaccttgttcttcactcaacctcagccacccatttccactaatcaataccctagagcttattaccggttgtaaagactgataatgcagtcattatctgttattgctccagctccatcgtctcatttcaagcatcccattctctgactaccacctctttcttc-----cctcctaaaaccttgactgaaaacaattcttcaacctcactgaagtgccaaatccatccatcctatcatcttttccccctttctcacctacctcgtgtcttcatgtctcttactgtctagtttggagtccttgattatct-----aatcattaccttgctttactatcttataacattaacttctttacccatctctctcttcatcccgctctccttgcaaaactacagccttggcaaaatccagttgtccacctcctctacacctgtctatgcccagctgagcctgggtggaacagaacacagagccgtggcgcctgtttccagtttatgaccattaacttctagtgggct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140035287 853 - 143122389 ccctttaccttatcttcctaactgctccccgaagtcctctcaagccacatctgctttgt------ccccacacgctgaaccaccacgtttggtgctagcgcctc---atcactgccccacgatcatccttccctcctcctggagacccctggctttgcatctcaggccaccagatcatcgttgcagtcatctattcttctctggtcc---atgccaccttgttccttgcggattga-----------------------------------agctcctggagcactatcagtacaccaaccctacttgtcagacagtaacacctgtgattt-------------------------------------------------------cagtgttcttatagacaatccttcca---------gtactctggcttctcaggtccttaa-----------------------------------tctcctccgatgaccttgttcttcactcaacctcagccacccatttccgt--tactataccctagagcttattaccggttgtgaagactgataatgccgtcattatctcttactgctccagctccatcgtctcatttcaagcatctccttctctgaccaccacctctttcttc-----cctcctaaaaccttgactgaaaacaattctcccacctcactgaagtgcaaaatccatccatcctatcatcttttccccctttctcacctacctcatgtcttcatgtgtctcattgtcatgtttggagtccttgattatct-----aatcattaccttgctttactatcgtataacattaacttctttacccatctctctcttcatcccgctctccttgcaaaactacaaccttggtaaaatccagttgcccacctcctctgtacctgtctatgcccagctgagcctgggtggaacagaacacagagccgtggtgactgtttccagtttatgaccattaacttctagtgggct i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223514015 868 - 227556264 ccctttaccttatcttcctaactgctccccgaagtcctctcaagcaacatctgctttgt------ccccacaccctgaaccaccgcgtttggtgctagctcctcatgatcactgctccacaatcatccttccctcctcctggagacccctggctttgcatctcaggccaccagatcattgttgcagtcatctgtgcatctctggtcc---atgccaccttgttccttgcagattga-----------------------------------ggctcctggagtactatcagtacaccaactctacttgtcagacagtaacgcctgtgattc-------------------------------------------------------cagtgtt-ttgtagacagtccttccagtctgtctggtcctctggcttctcaggtccttaatctcc------------------------------tcttctctgatgaccttgttcttcactcaacctcagccacccatttctgt--aactataccctagagcttattaccagttgtaaagactgataatgcagtcattatctgctactcctccagctccatcgtctcatttccagcatcccattctctgaccaccg-ctatttcttc-----cctcctaaaaccttgactgaaaaaaattcttccatctcactgaagtgcaaaatccatccatcctatcatcttttccccctttctcacctacctcatgtcttcaggtctctcgttatctagtttggggtccttgattatct-----aatcattaccttgctttactaccttataacattaacttctttacccatctctctcttcatcccgctctccttgcgaaactacagccttggtaaaacccagttgcccacctcctctgtacctgtctatgtccagctgagcctgggtggaacaaaacacagagctatggtgactgttttcagtttatgaccattaacttctagtgggcT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16563802 847 - 220367699 cccTTTACCTTATCTTCCTAACTGCTCCCCGAAGTCCTCTCAAGCAACATCTGCTTTGT------CCCCACGCCCTGAACCACCGCGTTTGGTGCTAGCTCCTCATGATCACTGCTCCGCGAtcatccttccctcctcctggaGACCCCTGGCTTTGCATCTCAGGCCACCAGATCATTGTTGCAGTCATCTGTGCATCTCTGGTCC---ATGCCACCTTGTTCCTTGCAGATTGA-----------------------------------GGCTCCTGGAGTACTATCAGTACACCAACTCTACTTGTCAGACAGTAACGCCTGTGATTC-------------------------------------------------------CAGTGTT-TTGTAGACAGTCCGTCCA---------GTACTCTGGCTTCTCAGGTCCTTAATCTCC------------------------------TCTTCTCTGATGACCTTGTTCTTCACTCAACCTCAGCCACCCATTTCTGT--AACTATACCATAGAGCTTATTACCAGTTGTAAAGACTGATAA-------------TGCTACTCCTCCAGCTCCATCGTCTCATTTCCAGCATCCCATTCTCTGACCACcgcctctttcttc-----cctcctaaAACCTTGACTGaaaaaaaTTCTTCCATCTCACTGAAGTGCAAAATCCATCCATCCTATCATCTTTTCCCCCTTTCTCACCTACCTCATGTCTTCAGGTCTCTCGTTATCTAGTTTGGGGTCCTTGATTATCT-----AATCATTACCTTGCTTTACTACCTTATAACATTAACTTCTTTACCCATCTCTCTCTTCATCCCGCTCTCCTTGCGAAACTACAGCCTTGGTAAAACCCAGTTGCCCACCTCCTCTGTACCTGTCTATGTCCAGCTGAGACTAGGTGGAACAAAACACAGAGCTATGGTGACTGTTTTCAGTTTATGACCATTAACTTCTCGTGGGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82363111 861 + 85787240 ccctttaccttatcttcctaactgctccccgaagtcctctcaagccacatctgctttgt------ccccacaccctgaaccaccgcatttggtgctagctcctcatgatcactgctccacgatcatccttccctcctcctggagacccctggctttgcatctcaggccaccagatcattgttgcagtcatctatgcatctctggtcc---atgccaccttgttccttgcagattga-----------------------------------ggctcctggagtactatcggtacaccaactctacttgtcagacagtaacgcctatgattc-------------------------------------------------------caatgttcttgtagacagtccttcca---------gtactctggcttctcaggtccttaatctcc------------------------------tcttctctgatgaccttgttcttcactcaacctcagccacccatttccgt--aactataccctggagcttattaccagttgtaaagactgataatgtagtcgttatctgctactcctccagctccatcgtctcatttccagcatcccattctctgaccaccgcctctttcttc-----cctcctaaaaccttgactgaaaaaaattcttccatctcactgaagtgcaaaatccatccatcctatcatcttttccccctttctcacctacctcatgtcttcaggtctctcattatctagtttggggtccttgattatct-----aatcattaccttgctttactacgttataacattaacttctttacccatctctctcttcatcccactctccttgcgaaactacagccttggtaaaacccagttgcccacctcctctgtacctgtctatgtccagctgagcctgggtggaacaaaacactgagctgtggtgcctgttttcagtttatgacctttaacttctagtgggcT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36233239 712 + 80974532 CCCTATACCTCCTCTTCCTGCCTGTTCTCTGCAGCCCTCTCTAGTCACAT-TGCTTTGTCTCCCACCCCAATCCCCGGGCCACGAAACGCAGGACCTGGAGATT---GCCACTGTGGCCC-ATCACCCTTCTGGACTC-------TCCCAGATACTGCGTGTCCTGCCATCAGGTCATTG----------------------GGACC---CAGCCACCCACCTCT----------------------------------------------GGCTCCTAGGGTCCCGCCACCAC-CCCACCTTGCTTGTCTG----------------------------------------------------------------------------------CTGTACACGATGCTTCTG---------CTACCAAGGCCCCT---GGCCTGGGTCTCT------------------------------GCTCCTT------CCCTGCT----------------CCGCCCAGCCCcac--acctcagcccta----ttactaacagc-------actg--------------------------------cccatggtctcatcaccatca-cctattcttcagttgcttcttcttcttgctcactccctctggagcctcgactccagat-gttcttcctt----ctgaggtac--aacccctccaccctgccaca----ctccccttctcacctgcctcctacctccac-cgggtcgtcatctcg-ctgacatccttgaccatctgttagagtcagtcccctgcttgaac-cctggggaccagagctgctttgc------ctgggtgctccccactctcttcacagagctggggccctgccagagtatggttctcc-cctgatttcaccctgattgcacccagccagaccagggagg-tcaaaacccaga-ccatgatgactgcctacagtttctgaccataaacctcaaatgggct i canFam3.chr7 C 0 I 105 e mm10.chr1 178661877 375 + 195471971 I e calJac3.chr19 14031277 8141 - 49578535 I e rheMac3.chr1 16751190 1835 - 229590362 I a score=319553.000000 s hg38.chr1_KI270759v1_alt 41444 195 + 425601 cgagcaccctc---------------------------------------------------------------------------tggca-------------------------------gagcgttctcctctttctgtatcat-catttcttctctcttgattgaatcactccttttagcatacaaaaatgctattataactcccaacttaaaaaat----aaatttctcttaacctcacacatctcattaactactgtcccctttcttttctttc-tttctttctt----------------tctttttttttagaga s panTro4.chr1 224782550 195 + 228333871 cgagcaccctc---------------------------------------------------------------------------tggca-------------------------------gagcgttctcctctttctgtatcat-catttcttctctcttgattgaatcactccttttagcatacaaaaatgctattataactcccaacttaaaaaat----aaatttctcttaacctcacacgtctcattaactactgtcccatttcttttctttc-tttctttctt----------------tttttttttttagagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226146542 199 - 229942017 tgagcaccctc---------------------------------------------------------------------------tggaa-------------------------------gagcgttctcctctttctgtatcat-catttcttctctcttggttgaatcactccttttagaatacaaaaatgctattttaactcccaacttaaaaaac----aaatttctcttaacctcacacatctcattaactactgtcccatttcttttctttc-ttcttttctt-----cttc-------tttttttttttagaga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140036140 193 - 143122389 tcagcaccctc---------------------------------------------------------------------------tggca-------------------------------gagcatt---ctctttctgtatcgt-catttcttctctcttgattgaatcactcgttttagaatacaaaaatgctattataactcccaacttaaaacac----aaatttctcttaacctcacacatctcattaactactgtcccatttcttttctttc-tttctttctt--------c-------ttcttttttttagaga i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223514883 203 - 227556264 TGAGCACCctc---------------------------------------------------------------------------tggca-------------------------------gagtgttctcctctttctgt---at-catttcttctctcttgattgaatcactccttttagaaagcaaaaatgctattataactcccaacttaaaaaat----aaaagttctcttacctcacacatctcattaactactgtcccatttcctttctttc-ttcttttcttttctttttc-----tttttttttttttagaga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16564649 204 - 220367699 TGAGCACCCTC---------------------------------------------------------------------------TGGCA-------------------------------GAGTGTTCTCCTCTTTCTGTATCAT-CATTTCTTCTCTCTTGATTGAATCACTCCTTTTAGAAAGCAAAAATGCTATTATAACtcccaacttaaaaaat----aaaagttctcttACCTCACACATCTCATTAACTACTGtcccatttcctttctttc-ttcttttcttttctttttc-------tttttttttttagaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82363972 211 + 85787240 TGAGCACCctc---------------------------------------------------------------------------tggca-------------------------------gagtgttctcctctttctgtatcat-catttcttctctcttgattgaatcactccttttagaaagcaaaaatactgttataactcccaacttaaaaaac----aaaagttctc-tacctcacacatctcattaactactgtcccatttcctttctttctttcttttcttttctttttctttcttttttttttttttagagg i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36234056 301 + 80974532 tgcgcatcttctctaccttgtcacctgaggctggggaggaagtgttcgtcaccagccggggccagactctgtgctggctctctaggtggcattccctctgcctgttcagggtcccccttcagaagcttccctttctttctatgtcctgtgtctcttctct----attggattgttctcctaggagtgcaaaaatgcccttctggctcccaac-cagaaaatactaagagttcttttgacctcatatcccccgctaactactgttccatttctgtgattat-attgcagcaa----------------atttattcttaaaaaa i canFam3.chr7 I 105 I 46 e mm10.chr1 178661877 375 + 195471971 I e calJac3.chr19 14031277 8141 - 49578535 I e rheMac3.chr1 16751190 1835 - 229590362 I a score=83750.000000 s hg38.chr1_KI270759v1_alt 41639 51 + 425601 cagggtctta-cctgtcacccaggctggagcgtagtggcgtaaccacagctc s panTro4.chr1 224782745 51 + 228333871 cagggtctta-cctgtcacccaggctggagcgtagtggcgtaaccacagctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226146741 51 - 229942017 cagggtctta-catgtcacccaggctggagtgtagtggcgtaaccacagctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140036333 51 - 143122389 cagggtctta-cctgtcacccaggctggagtgtagtggcgtaaccacagctc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223515086 52 - 227556264 taggatcttgccctgtcacccaggctggagtacagtggcacaaccatagctc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16564853 52 - 220367699 taggatcttgccctgtcacccaggctggagtgcagtggcacaaccatagctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82364183 52 + 85787240 taggatcttgccctgtcacccaggctggagtacagtggcacaaccatagctc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178661877 375 + 195471971 I e canFam3.chr7 36234357 46 + 80974532 I e calJac3.chr19 14031277 8141 - 49578535 I e rheMac3.chr1 16751190 1835 - 229590362 I a score=87444.000000 s hg38.chr1_KI270759v1_alt 41690 42 + 425601 actgtagccctgtagccttgaactcctgggctcaagtcatcc s panTro4.chr1 224782796 42 + 228333871 actgtagccctgtagccttgaactcctgggctcaagtcatcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226146792 42 - 229942017 actgtagccctgtagccttgaactcctgggctcaagtgatcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140036384 42 - 143122389 actgtagccctgtagccttgaactcctgggctcaagtgatcc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223515138 42 - 227556264 actgtagccctgtagccttgaactcctgggctcaagtgattc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16564905 42 - 220367699 actgtagccctgtagccttgaactcctgggctcaagtgattc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82364235 42 + 85787240 actgtagccctgtagccttgaactcctgggctcaagtgatcc i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36234403 39 + 80974532 aTTGCTGTCATTCAACCAAGAACTCCTGTG---AAGTCATCA i canFam3.chr7 I 46 I 139 e mm10.chr1 178661877 375 + 195471971 I e calJac3.chr19 14031277 8141 - 49578535 I e rheMac3.chr1 16751190 1835 - 229590362 I a score=410595.000000 s hg38.chr1_KI270759v1_alt 41732 240 + 425601 tccttcatcagcctccaaagtagctggtattacaggtgcatgctaccatacccggctaatttttaaa-----ttttttttgagagatggggtcttgctacattttccaggctggtcttgaactcccgggctcaagcaatcctcctgtctccccctaaacggatagcaggcgtgagccactgcacttggcctgttccatttctttgattatctttgcagcaaatttatttttaaaatgcgtgttta s panTro4.chr1 224782838 240 + 228333871 tccttcatcagcctccaaagtagctggtattacaggtgcatgctaccatacccggctaatttttaaa-----ttttttttgagagatggggtcttgctacattttccaggctggtcttgaactcccgggctcaagcaatcctcctgtctccccctaaacggatagcaggcgtgagccactgcacttggcctgttccatttctttgattgtctttgcagcaaatttatttttaaaatgcgtgttta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226146834 241 - 229942017 tccttcatcagcctccaaagtagctggtattacaggtgcatgctaccatacctggttaatttttaaa----tttttttttgagagatggggtcttgctacattgtccaggctggtcttgaactcccaggctcaagcaatcctcctgcctccccctaaagggatagcaggcgtgagccactgcacttggcctgttccatttctttgattgtctttgcagcaaatttatttttaaaatgcgtgttta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140036426 230 - 143122389 tccttcatcagcctccaaagtagctggtattacaggtgcatgctaccatacccggctaatttttaaa-----atctttttgagagatggggtcttgctacattgtccaggctggtcttgaactcccgggctcaagcaatcctcctgtctccccctaaaggggc----------agccactgcatttggcctgttccatttccttgactgtctttgcagcaaatgtattttttaaatgcgtgttta i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223515180 238 - 227556264 tccttcatcaacctccaaagtagc---tactacagttgcatactaccatacctggctaatttttaaa----tttttttttgagagatggggtcttgctacattgtccaggctggtcttgaactcctgggctcaagcaatcctcctgcctccccctaaagggatagcaggcgtgagccactgcatttggcctgttccaattctttgattgtctttgcagcaaatttattttttaaatgcatgttta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16564947 238 - 220367699 tccttcatcaacctccaaagtagc---tacTACAGTTGCatactaccatacctggctaatttttaaa----tttttttttgagagatggggtcttgctacattgtccaggctgctcttgaactcctgggctcaagcaatcctcctgcctccccctaAAGGGAtagcaggcgtgagccactgcatttggcctGTTCCAATTCTTTGATTGTCTTTgcagcaaatttattttttaaatgcatgtgta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82364277 239 + 85787240 tccttcatcagcctccaaagtagc---tattacaggtgcatactaccatacctggctaa---ttaaaatattttttttttgagagatggggtcttgctacattgtccaggctggtcttgaactcctgggctcaagcaatcttcctgcctccccctaaagggatagcaggcgtgagccactgcacttggtctgttccaattctttgattgtctttgcagcaaatttatttttaaaatgcatgtttg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178661877 375 + 195471971 I e canFam3.chr7 36234442 139 + 80974532 I e calJac3.chr19 14031277 8141 - 49578535 I e rheMac3.chr1 16751190 1835 - 229590362 I a score=434228.000000 s hg38.chr1_KI270759v1_alt 41972 223 + 425601 tactctctgtttccagtttctcatctctatcctctcttgaacccactccatttatcttttagctgccaccactcaatcaaaagctcttatgaaggtcactgatgataatcaagactaa-------------ataacatttgtaatagataataattgtaatctgatcattataacacgttcattcattctacaaatatttgttgactggcacctactatgtgccagttactgttct s panTro4.chr1 224783078 223 + 228333871 tactctctgtttccagtttctcatctctatcctctcttgaacccactccatttatcttttagctgccaccactcaatcaaaagctcttatgaaggtcactgatgataatcaagactaa-------------ataacatttgtaatagataataattgtgatctgatcattataacacgttcattcattctacaaatatttgttgactggcacctactatgtgccagttactgttct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226147075 223 - 229942017 tactctctgtttccagtttctcatctctgtcctctcttgaactcacttcatttatcttttagctgccaccactcaaccaaaagctcttatgaaggtcactgatgataatcaagactaa-------------ataacatttgtaatagataataattgtgatctgatcattataacacgttcattcattctacaaatatttgttgtctggcacctactatgtgccagtcactcttct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140036656 220 - 143122389 tactctctgtttccagtttctcatctctatcctctcttgaacccactccatttatcttttagctgccaccactcaaccaaaagctcttatgaaggtcactgatgataatcaatactaa-------------ataacatttgtaatagatgataattgtgatctgatcattataacacgttcattcattctacaaatatttgtagac---cacctactatgtgccagtcactgttct i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223515418 220 - 227556264 tactttctgtctccagtttctcatctctatcctctcttgaacccactccacttatcttttagctgccaccactcaacaaaaagctcttatgaaggtcactgatgataatcaatactaa-------------atAACATTTGTAATAGATAATAATTGTGATCTGATCATTATAAGACGttcattcattctacaaatatttgttgac---cacctactatgtgccagtcactgttct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16565185 220 - 220367699 TACTTTCTGTCTCCAGTTTCTCATCTCTATCCTCTTTTGAACCCACTCCACTTATCTTTTAGCTGCCACCACTCAACAAAAAGCTCTTATGAAGGTCACTGATGATAATCAATACTAA-------------ATAACATTTGTAATAGATAATAATTGTGATCTGATCATTATAAGatgttcattcattctacaaatatttgttgac---cacctactatgtgccagtcactgttct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82364516 219 + 85787240 tactttctgtttccactttcttatctctatcctctcttgaacccattccatttatcttttagctgccaccactcaaccaaaa-ctcttatgaaggtcactgatgataatcaatactaa-------------atAACATTTGTAATAGATAATAATTGTGATCTGATCATTATAACACGttcattcattctacaaatatttgttgac---cacctactatgtgccagtcactgttct i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36234581 212 + 80974532 ttctctccctctcc----------ctctgccctcctgctcacacactcactctctctcct-----cctctctcaaatgaataagtctt-taaCAGTAA--GATAATAATGACAGCTAATATTTGTAATATGATTAATTTTGTGATAGACAGTAATTATCATATAATAATTAT---GTTTTCATTCATTCGacaagtatctgttgac---cacctgctatgtgccagatgctgttat i canFam3.chr7 I 139 C 0 e mm10.chr1 178661877 375 + 195471971 I e calJac3.chr19 14031277 8141 - 49578535 I e rheMac3.chr1 16751190 1835 - 229590362 I a score=75194.000000 s hg38.chr1_KI270759v1_alt 42195 129 + 425601 aagtgttttacgtgtattcacttgcttaagccc-taaggcgggtaccgttattttccccatgttatgggtgaggaaactgagaaacagagaggttgaagaatttaccttctatgccataagtggtataaa s panTro4.chr1 224783301 129 + 228333871 aagtgttttacgtgtattcacttgcttaagccc-taaggtgggtaccgttattttccccatgttatgggtgaggaaactgagaaacagagaggttgaagaatttaccttctatgccataagtagtataaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226147298 129 - 229942017 aagtgttttacatatattaacttacttaagccc-taaggcgggtaccattattttccccatgttatgggtgaggaaactgagaaacagagaggttgaagaatttaccttctataccataagtagtataaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140036876 129 - 143122389 aagtgttttacatatattaacttgcttaagccc-taaggcaggtaccattattttccccatgttatgggtgaggaaactgagaaacagagaggttgaagaatttaccttctatatcataagtagtataaa i nomLeu3.chr5 C 0 C 0 s canFam3.chr7 36234793 90 + 80974532 gagtattttacaaatatgaactcctgtcagcccataaggtggtcacccttactgtccccattacatggatgaggaaacAAA-------------------------CTTTTCTGC--------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178661877 375 + 195471971 I e calJac3.chr19 14031277 8141 - 49578535 I e rheMac3.chr1 16751190 1835 - 229590362 I e chlSab2.chr25 82364735 0 + 85787240 C e papAnu2.chr1 16565405 0 - 220367699 C e macFas5.chr1 223515638 0 - 227556264 C a score=309637.000000 s hg38.chr1_KI270759v1_alt 42324 128 + 425601 atggtcagttctcagtcctcattttacttgatctatctgcagcatttgcccgtagatcattccctccttcctggatgactttctttgccttgttttctgaac-----------atcactttttgatttctcctttgagc s panTro4.chr1 224783430 128 + 228333871 atggtcagttctcagtcctcattttacttgatctatctgcagcatttgcctgtagatcattccctccttcctggatgactttctttgccttgttttctgaac-----------atcactttttgatttctccttttagc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226147427 125 - 229942017 atggtcagttctcagtcctcattttacttgatctatctgcagcatttgcccgtag---attccctccttcctggatgactttctttgccttgttttctgaac-----------atcactttttgatttctccttttagc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140037005 128 - 143122389 atggtcaattctcagtcctcattttacttgatctatctgcagcatttgcccgtagatcattccctccttcctggatgactttctttgccttgttttctgaac-----------atcactttttgatttctccttttagc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16753025 139 - 229590362 atggtcaattctcagtcctcattatacttgatctatctgcagcatttgcccgtagctcattccctccttcctggatgactttctttggatcacttttggatcctccttcctggatcactttttgatttctccttttagc i rheMac3.chr1 I 1835 C 0 s macFas5.chr1 223515638 139 - 227556264 atggtcaattctcagtcctcattatacttgatctatctgcagcatttgcccgtagctcattccctccttcctggatgactttctttggatcacttttggatcctccttcctggatcactttttgatttctccttttagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16565405 139 - 220367699 aTGGTCAATTCTCAGTCCTCATTATACTTGATCTATCTGCAGCATTTGCCCGTAGCTCATTCCCTCCTTCCTGGATGACTTTCTTTGGATCACTTTTGGATCCTCCGTCCTGGACCACTTTTTGATTTCTCCTTTTAGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82364735 139 + 85787240 atggtcaattctcagtcctcattttacttgatctatctgcagcatttgcccgtagctcattccctccttcctggatgactttctttggatcacttttggatcctccttcctggatcactttttgatttctccttttagc i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36234883 100 + 80974532 ----------------------Tttacttgacctatctgtggcatttatcatttaatcattccttcct---tgaaatactctcttcatcttatttccTT--------------Tttcttttttaagattttatttgaga i canFam3.chr7 C 0 I 621 e mm10.chr1 178661877 375 + 195471971 I e calJac3.chr19 14031277 8141 - 49578535 I a score=111825.000000 s hg38.chr1_KI270759v1_alt 42452 46 + 425601 tcactacctattccttctcaataccttgtgctggtttcctctcatc s panTro4.chr1 224783558 46 + 228333871 tcactacctattccttctcaataccttgtgctggtttcctctcatc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226147552 46 - 229942017 tcactacctattccttctcaatatcttgtgctggtttcctcttatc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140037133 46 - 143122389 tcactacctattccttctcaatatcttgtgttggtttcctctcatc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16753164 46 - 229590362 tcactacctattccttctcagtatcttgtgctggtttcctctcatc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223515777 46 - 227556264 tcactacctattccttctcagtatcttgtgctggtttcctctcatc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16565544 46 - 220367699 TCACTAGCTATTCCTTCTCAGTATCTTGTGCTCGTTTCCTCTCATC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82364874 46 + 85787240 ttactacctattccttctcagtatcttgtgctggttttctctcatc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178661877 375 + 195471971 I e canFam3.chr7 36234983 621 + 80974532 I e calJac3.chr19 14031277 8141 - 49578535 I a score=919174.000000 s hg38.chr1_KI270759v1_alt 42498 375 + 425601 tgctctaaataaatcgtggaatgatcattcatcagacctttgctctgcctgcactgactccctatgccatccctcccaggcccgtaacttccaatgctatcagtatattattgatttgcaaaattgtatccctagcctggaccttgaccctgaacttgagactGTTGgtc-ttagtctgctcaggctgatat-aaaaaaa--caccacagtctgggtggcttataaacgacagaaatgtatgtatttcttacagttctggagactgggaagtccaagaccaaggcaccagcaacttgagtgtctgaggagggccctcttgttcatagatggca---cattattgtgttttcacacagtggagggggcgaggaagctctctgg s panTro4.chr1 224783604 375 + 228333871 tgctctaaataaatcgtggaatgatcattcatcagacctttgctctgcctgcactgactccctatgccatccctcccagtcccgtaacttccaatgctatcagtatattattgatttgcaaaattgtatccctagcctggaccttgaccctgaacttgagactGTTGgtc-ttagtctgctcaggctgatat-aaaaaaa--cgccacagtctgggtggcttataaacgacagaaatgtatgtatttcttacagttctggagactgggaagtccaagaccaaggtaccagcaacttgagtgtctggggagggccctcttgttcatagatggca---cattattgtgttttcacacagtggaaggggtgaggaagctctctgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226147598 374 - 229942017 tgctctaaataaattgtggaatactcattcatcagacctttgctctacgtgcactgactccctatgtcatccctcccagtcccgtaacttccaatgctatcaatatattactgatttgcaaaattgtatccctagcctggaccttgaccctgaacttgagactGTTGgtc-ttagtctgctcaggctgatat--aaaaaa--caccacagactgggtggcttataaacgacagaaatgtatgtatttcttacagttctggagactgggaagtccaagaccaaggcaccagcaactttagtgtctgaggagggcccttttgttcatagatggca---cattattgtgttttcacacagcagaaggggcgaggaagctctctgg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140037179 375 - 143122389 tgctctaaataaatcctggaacactcattcatcagacctttgctctacgtgcactgactccctatgccatccctcccagtcccgtaacttccactgctatcaatatattattgatttggaaaattgtatccctagcctggaccttgaccctgaacttgagactGTTGgtc-ttagtctgctcaggctgatataaaaaaaa--caccgcagactgggtggcttataaacgacagaaatgtatgtatttctcacagttctggagactgggaagtccaagaccaaggcaccagcaacttgagtgtctgaggagggccct-ttgttcacagatgggg---cattattgtgttttcacacagcagaaggggcgaggaagctctctgg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16753210 375 - 229590362 tgctctaaataaatcctggaatgctcattcatcagacctttgctctacctgcactgcctccctgtgtcatctctcccagtcctgtaacttccaatgctatcaatatagtattgatttgc-aaattgtatccctagcctggaccttgaccctgaacttgagactGTTGgtc-ttagtctgctcaggctgctac-aaaaaaaaccaccacagactgggcagcttataaacgacagaaatgtatgtatttcttacagttctggagactgggaagtccaagaccaaggcaccagcaactttagtgtctgaggagggccctcttgttcatagatggg----cattattgtgttttcacacagaggaaggggcgaggaagctctctcg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223515823 375 - 227556264 tgctctaaataaatcctggaatgctcattcatcagacctttgctctacctgcactgcctccctgtgtcatctcccccagtcctgtaacttccaatgctatcaatatagtattgatttgc-aaattgtatccctagcctggaccttgaccctgaacttgagactGTTGgtc-ttagtctgctcaggctgctac-aaaaaaaaccaccacagactgggcagcttataaacgacagaaatgtatgtatttcttacagttctggagactgggaagtccaagaccaaggcaccagcaactttagtgtctgaggagggccctcttgttcatagatggg----cattattgtgttttcacacagaggaaggggcgaggaagctctctgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16565590 375 - 220367699 TGCTCTAAATAAATCCTGGAATGTTCGTTCATCAGACCTTTGCTCTACCTGCACTGCCTCCCTGTGTCATCTCTCCCAGTCCTGTAACTTCCAATGCTATCAATATAGTATTGATTTGC-AAATTGTATCCCTAGCCTGGACCTTGACCCTGAACTTGAGACTGTTggtc-ttagtctgctcaggctgctac-aaaaaaacccaccacagACTGGGCAGCTTATAAACGACAGAAATGTatgtatttcttatagttctggagactgggaagtccaagaccaaggcacCAGCAACTTTAGTGTCTGAGGAGGGCCCTCTTGTTCATAGGTGGG----CATTATTGTGTTTTCACACAGCGGAAGGGGCGAGGAAGCTCTCTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82364920 373 + 85787240 tgctctaaataaatcctggaaagctcattcatcagacctttgctctacctgcactgcctctctgtgtcatccctcccagtcctgtaacttccaatgctatcaatatattattgatttgc-aaattgtatccctagcctggaccttgaccctgaacttgagactGTTGGTC-T---tttgctcaggctgctac-aaaaaaaatcaccacagactgggcagcttataaacgacagaaatgtatgtatttcttacagttctggagactgggaagtctaagaccaaggcaccagcagcgttagtgtctgaggagggccctattgttcatagaggggt---cattattgtgttttcacacagcggaaggggcgaggaagctctctgg i chlSab2.chr25 C 0 C 0 s mm10.chr1 178662252 338 + 195471971 tATTCTAAGCCAACTGTGGAGGTATTGATCTTCGACCTTTTTCTCTGCCCTCACT------CCATGTGACCCAACCCCCTTTCATAA-TTTTAGTACT-----TTTATCATTGACTTCCTCAACTATGCCTCCATTCCAAATTTCATCCCTGAATTTGACTTAATAGCTTAttggtccatttgtgctgctat-aatgtaa---atcacaatcctggtgacttataagcaac--aagttcatg---ttttcagaggtctgaggactggggaattgaagatcaaggca-----gatttta-----------------tcctgtttttatatgtcatctcctccctgtgtcctcccatgctggaa-gggtgtgggagctctctgg i mm10.chr1 I 375 C 0 e canFam3.chr7 36234983 621 + 80974532 I e calJac3.chr19 14031277 8141 - 49578535 I a score=425632.000000 s hg38.chr1_KI270759v1_alt 42873 148 + 425601 gtcccctttc-taagagcactaatgtcattcctaatgactccaccctcatgacctgatcaccttccaaaggctttacctc-cagccatcatgttggggactaggtttcaa-tatatgaattctgt-ggggcaacaccacgttcagtttacag s panTro4.chr1 224783979 148 + 228333871 gtcccctttc-taagagcactaatgtcattcctaatgactccaccctcatgacctgatcaccttccaaaggctttacctc-cagccatcatgttggggactaggtatcaa-tatatgaattctgt-gggggaacaccacgttcagtttacag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226147972 149 - 229942017 gtcccctttc-taagagcactaatgtcattcctaatggctccaccctcctgacctgatcaccttccaaaggctttacctc-cagccatcacgttggggactaggtttcaa-tatatgaattctgtgggggcaacacaacgttccgtttacag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140037554 148 - 143122389 gtcccctttc-taagagcactaatgtcattcctaatggctccgccctcatgagctgatcaccttccaaaggctttacctc-cagccatcacgttggggactaggtttcaa-tatatgaattctgt-gggggaacacgacgttcagTTGACAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16753585 149 - 229590362 gtcccctttcataagagcactaatgtcattcctaatggctctgccctcatgacctgatcaccttccaaaggcttaacctc-cagccatcacactggggactaggtttcaa-tatatgaattttgt-ggggggacacaacgttcagTTTACAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223516198 149 - 227556264 gtcccctttcataagagcactaatgtcattcctaatggctctgccctcatgacctgatcaccttccaaaggcttaacctc-cagccatcatactggggactaggtttcaa-tatatgaattttgt-ggggggacacaacgttcagTTTACAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16565965 149 - 220367699 GTCCCCTTTCATAAGAGAACTAATGTCATTCCTaatggctctgccctcatgacctgatcaccttCCAAAGGCTTAACCTC-CAGGCATCACACTGGGGACtaggtttcaa-tatatgaattttgt-ggggggACACAATGTTCAGTTTACAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82365293 149 + 85787240 gtcccctttcataagagcactaatgccattcctaacggctctgccctcatgacctgatcaccttccaaaggcttaacctc-cagccatcacactggggactaggtttcag-tatatgaattctgt-ggggggacacaacgttcagTTTACAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14039418 149 - 49578535 gttccctttcataagagcactaatttcattcctaatggctccaccctcatgacctaatcaccttctgaaggctttatctc-cacccgttgcattgggggttaggttttaa-tatatgaattctgg-gagggaacgcaacgttcagTTTATGG i calJac3.chr19 I 8141 C 0 s mm10.chr1 178662590 116 + 195471971 ggcctctgttataG---------------TCCTCGTG------CCCTTGGGTCCTGGCCACTTTGCAAAGGTCCAAGAGCATAGTGATCAT--------CTGAATGTCAACTGAATGGATTTGGG-GGG------CATTTGTTGGACGACAG i mm10.chr1 C 0 C 0 e canFam3.chr7 36234983 621 + 80974532 I a score=837824.000000 s hg38.chr1_KI270759v1_alt 43021 242 + 425601 cGGTctctctggcctcatgtccaaccatctcccctcctcattcatcc------cactccagccacgccggcct-cttgctgttcccagttacgccaa-ctcg-cccccaccc--agtccttcatgtctgcctgctcccctgcctgggtcgcttccccacgatgcctgctgtggctcacagcctcactgccttccggtctctgctccagtgtccctgaat--agagtccaactctgagcatgctgtggaaaagggc s panTro4.chr1 224784127 244 + 228333871 cGGTctctctgacctcatgtccaaccatctcccctcctcattcatcc------cactccagccacgccggcct-cttgctgttcccagttacgccaa-ctcg-cccccaccc--agtccttcatgtctgcctgctcccctgcctgggtcgcttccccacgatgcctgctgtggctcacggcctcactgccttccggtctctgctccagtgtccctgaatagagagtccaactctgagcatgctgtggaaaagggc i panTro4.chr1 C 0 I 3654 s ponAbe2.chr1 226148121 243 - 229942017 cGGTctctctgacctcacgtccaaccatctcccctcctcattcatcc------cactccagccactccggcct-cttgctgttcccagttatgccaa-ctcgccccccaccc--agtccttcatgtctgcctgctcccctgcctgggtcgcttccccacaatgcctgct-tggctcacggcctcactgccttccggtctctgctcaagtgtccctgaatagagaggccaactctgagcatgctgtggaaagggc- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140037702 244 - 143122389 CGGcctttctgacctcatgtccaaccatcgcccctcctcattcagcc------cactccagccacgctggcct-cttgctgttcccagttatgccaa-cccg-cccccaccc--agtccttcatgtctgcctgctcccctgcctgggttgcttccccacgatgcctgctgtggctcacagcctcactgccttccggtctctgctcaagtgtccctgaatagagaggccaactctgagcatgctgtggaaaagggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16753734 244 - 229590362 TGGTctctctgacctcatgcccaaccatctcccctcctcattcatcc------cactccagccacaccggcct-cttgctgttcccagttgtgccaa-ctcg-cccccaccc--agtccttcatgtctacctgcccccctgcctgggtcgcttccccacgatgcctgctgtggctcatggcctcactgccttccggtctctgctcaagtgtccctgaatagagaggccaactctgagcatgctgtggaaaaggcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223516347 244 - 227556264 TGGTctctctgacctcatgcccaaccatctcccctcctcattcatcc------cactccagccacaccggcct-cttgctgttcccagttgtgccaa-ctcg-cccccaccc--agtccttcatgtctacctgcccccctgcctgggtcgcttccccacgatgcctgctgtggctcatggcctcactgccttccggtctctgctcaagtgtccctgaatagagaggccaactctgagcatgctgtggaaaaggcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16566114 244 - 220367699 TGGTCTCTCTGACCTCATGCCCAACCATCTCCCCTCCTCATTCATCC------CACTCCAGCCACACCGGCCT-CTTGCTGTTCCCAGTTGTGCCAA-CTCG-CCCCCACCC--AGTCCTTCATGTCTACCTGCCCCCCTGCCTGGGTCGCTTCCCCACGATGCCTGCTGTGGCTCATGGCCTCACTGCCTTCTGGTCTCTGCTCAAGTGTCCCTGAATAGAGAGGCCAACTCTGAGCATGCTGTGGAAAAGGCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82365442 242 + 85787240 TGGTctctctgacctcatgcccaaccatc-cccctcctcgttcat-c------cactccagccacaccggcct-cttgctgttcccagttgtgccaa-cttg-cccccaccc--agtccttcatgtctacctgcccccctgcctgggtcgcttccccacgatgcctgctgtggctcatggcctcactgccttccggtctctgctcaagtgtccctgaatagagaggccaactctgagcatgctatggaaaaggcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14039567 249 - 49578535 TGGTctcgctgacctcatttccgaccgtctcccctcctcattcatccactctgcaatccagccgctcctgcct-cttgct-ttcccagttatgccaa-cttg-cccccaccc--catcctgtgtgtctacctgctcccctgccaggctcgctcccccacgatgcctgctgtggctcacggcctcgctgccttccagtctctgctcaactgtccctgaatagagagcccagctctgagcctgctgtggacaagccc i calJac3.chr19 C 0 C 0 s mm10.chr1 178662706 211 + 195471971 CAGTCCCActgagctcttctccg-ccatt-ttcctctttatttgttc------cactgtagccaggctggctt-tttgctgctcctaagcacaatgg-ctgt-ctcaggcca--gagccttggaatgtacctacttctttgcctggccctcttcttcaaagagctggttgtagctcacagc--aactcctttcaggtc------------tcccttcacagagaggccgcctgtgccc----------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36235604 237 + 80974532 CACTGtccctgaccttactctcaactgtcttccctcct---------------caccccagctatgctggcctccttgctattcccaggcatgctaatcctg-cccgcaccttggggccttcatgtgcgtccctgtccctcgccaagatgcttttccaagatgcctgctggggctcatgaccttgttgccttcacgtc--tgttcaggtgtccactgatggagaagccatctctgactgtcttgtgaaacagaac i canFam3.chr7 I 621 I 4 a score=7497.000000 s hg38.chr1_KI270759v1_alt 43263 2 + 425601 ct s ponAbe2.chr1 226148364 2 - 229942017 ct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140037946 2 - 143122389 ct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16753978 2 - 229590362 ct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223516591 2 - 227556264 ct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16566358 2 - 220367699 CT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82365684 2 + 85787240 ct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14039816 2 - 49578535 ct i calJac3.chr19 C 0 C 0 s mm10.chr1 178662917 2 + 195471971 ct i mm10.chr1 C 0 C 0 s canFam3.chr7 36235845 2 + 80974532 cc i canFam3.chr7 I 4 C 0 e panTro4.chr1 224784371 3654 + 228333871 I a score=5623525.000000 s hg38.chr1_KI270759v1_alt 43265 1694 + 425601 cattccaatacacaaagtccctt-------ttccca-----tgccctgccttactgttctccataggtca-catgtgacgtgacctgtgtgtgcttgtttactggttttgcttcagaagagacctccgtgagagcagggac--------cttggtttgttcatggctctatcgcacaactggg---tataataggtgctcgataaatattctgt--------------------------tgaatgaatcaatGAAGTTGCCAC--AGGGAAGGCATAGACATATGTCTTTCAAAACTCCATGTGCTTGGTC-TTTTTAAAAGTAAATTTCTTTGATTGTAAATAGATTCACATTGATA-CTTGAATAAAATCATAAAGGTAT-----------GTCTTCTTTCCTCTTCCTTT-AAGTTTTAAGACACTTATAAATGTACCTGAAATTGTAATAAAAGATCCCAGAGGATTTTACAGCATGTTTT----CCGTTGATGGTAATGGATGGAAATAATTTAAATAATAACATTAACAGGTT---GTTTTACTACAGGACCACAATAATTTTAAAAGACAAACTTGAATAATCCTGTTTTACCACATCCCTAAACCTATGAAACACACAGTACTCACTCATTAATGTTGATTTGTTTAAGAGAAATAA---ACTTCaaaaaaaaaaaaaaaa----------aaaaGCCAACAAAACTCACTCTGATATTAACTGCCTCGGGTTTAAAGGTTTTTTC--AGAATGCCTCAGTAATACTGGCTTAATGAATTAGGTTCTAAGAAAAATGGCCAGGCATAGTTAACAATAAATCAGGTTATACTATTTGCAGAAAAAGCAACTAAAACTCTCCTTGTAAATAATAATGTGGAAAGATCTGGTATTAATCAAGCCACTGTCTACAGCTGAGCTCTGTTTTCAGCTTCTGAACACAGTGGAGTTAATATTGAGCATATCTTTG---------TTTCAAGTATAATGAACAC--AATTCTGCAGTCCTTTGAGAACAGGCTTTTGTGAAAAATCAGTAAGGAATTGCACCTAAAACCCATTTACAAGATCATACTCCCAAAGGCTTTGTCTTAGAGCAGT--------------TTTTAAAA-TCTTGTTGGTAACCTCCTGACCACATCATTGGGAGTAC----AAAAAAGTGCAGAGA--GTATATATATATATATTTTTTTTT------------------------CATAAATACTTGCAC--------ATCACATTTCCCCTACGGA--------AATTCAACCAGCGGTTCCAAAGACTGCTGGGCTGGAGTTGTCCGGGTTGGTGGACCCGCCTGAGTCTG-----GGGTAG--------CTTAGCTTGTTCAGAGGTGTGCACAG-------GGCTGAGGACCTTCTGTGCGTAGCAG--AGTCATTCATCTGGTCAATGGCCACATGAAGACACAGATCTTGCCATATCAGATTCTCCTTCTTTCTACTGGAGGT--CTGGTGACTTT---ACCTGTGTTAGTTCAGGCACCTCTGGATAACTTAAGGAC-----TCACCAAGCGGCAGGTCCTTA----TGTAGCTCCACAGACCACCATGAAACCCTTCGACCTTTTCTGAAGTCTGCCTTACGTCTTGGGCCACTGAACATTCTGCCAGTCCTGAAGAACGT-GTTG-ATTCCAGTCTCATCCCAGTGCAAAGTGTCCTTCTCATCTTTGGGCTGCTG-TCCCCTGAGCAGGAATGCCGTCCCCACAGCTGATCTTTGACCAT-GGGTAGACTC--TGGTCT-ACCATATGACCTGGGACCATCAAAGCCCAGGTTAAGCTGCATCCCAAGTGTTTTTCTAGCCAGCCATGCCCT----GGGG----GTA s panTro4.chr1 224788025 1704 + 228333871 CATTCCAATACACAAAGtccctt-------ttccca-----tgccctgccttactgttctccataggtca-cacgtgacgtgacctgtgtgtgcttgtttactggttttgcttcagaagagacctccgtgagagcagggac--------cttggtttgttcatggctctattgcacaactggg---tataataggtgctcaataaatattctgt--------------------------tgaatgaatcaatGAAGTTGCCAC--AGGGAAGGCATAGACATATGTCTTTCAAAACTCCATGTGCTTGGTC-TTTTTAAAAGTAAATTTCTTTGATTGTAAATAGATTCACATTGATA-CTTGAATAAAATCATAAAGGTAT-----------GTCTTCTTTCCTCTTCCTTT-AAGTTTTAAGACACTTATAAATGTACCTGAAATTGTAATAAAAGATCCCAGAGGATTTTACAGCATGTTTT----CCGTTGATGGTAATGGATGGAAATAATTTAAATAATAACATTAACAGGTT---GTTTTACTACAGGACCACAATAATTTTAAAAGACAAACTTGAATAATCCTGTTTTACCACATCCCTAAACCTATGAAACACACAGTACTCACTCATTAATGTTGATTTGTTTAAGAGAAATAA---ACTTCAAAAAAAAAAAAA-----------------CCCAACAAAACTCACTCTGATATTAACTGCCTCGGGTTTAAAGGTTTTTTC--AGAATGCCTCAGTAATACTGGCTTAATGAATTAAGTTCTAAGAAAAATGGCCAGGCATAGTTAACAATAAATCAGATTATACTATTTGCAGAAAAAGCAACTAAAACTCTCCTTGTAAATAATAATGTGGAAAGATCTGGTATTAATCAAGCCACTGTCTACAGCTGAGCTCTGTTTTCAGCTTCTGAACACAGTGGAGTTAATATTGAGCATATCTTTG---------TTTGAAGCATAATGAACAC--AATTCTGCAGTCCTTTGAGAACAGGCTTTTGTGAAAAATCACTAAGGAATTGCACCTAAAACCCATTTACAAGATCATACTCCCAAAGGCTTTGTCTTAGAGCAGT--------------TTTTAAAA-TCTTGTTGGTAACCTCCTGACCACATCATTGGGAGTAC----AAAAAAGTGCAGAGAGTGtatatatatatatattttttttt-------------ttttttttttGCATAAATACTTGCAC--------ATCACATTTCCCCTATGGA--------AATTCAACCAGCGGTTCCAAAGACTGCTGGGCTGGAGTTGTCCGGGTAGGTGGACCCGCCTGAATCTG-----GGGTAG--------CTTATCTTGTTCAGAGGTGTGCACAG-------GGCCGAGGACCTTCTGTGCATAGCAA--AGTCATTCATCTGGTCAGTGGCCACATGAAGACACAGATCTTGCCATATCAGATTCTCCTTCTTTCTACTGGAGGT--CTGGTGACTTT---ACCTGTGTTAGTTCAGGCACCTCTGGATAACTGAAGGAC-----TCACCAAGCGGCAGGTCCTTA----TGTAGCTCCACAGACCACCATGAAACCCTTCGACCTTTTCTGAAGTCTGCCTTACGTCTTGGGCCACTGAACCTTCTGCCAGTCCTGAAGAGCGT-GTTGAATTCCAGTCTCATCCCAATGCAAAGTGTCTTTCTCATCTTTGGGCTGCTG-TGCCCTGAGCAAGAATGCCCTCCCCACAGCTGATCTTTGACCATGGGGCAGACTCCTTGTTAT-TGTATATGACCTGGGACCATTAAGCCCCAATTTAAGCTGCCTCCCAAGTGTTCCTCAACCCAGCCATGCCCT----GGGG----GTA i panTro4.chr1 I 3654 T 3675 s ponAbe2.chr1 226148366 1723 - 229942017 cactccaatacacaaagtccctt-------ttccca-----tgccctgccttactgttctccataggtca-cacgtgacgtgacctgtgtgtgcttgtttactggttttgcttcagaatagacctctgtgagagcagggac--------cttgttttgttcatggctctatcgcacagctggg---tataataggtgctcaataaatattctgt--------------------------tgaatgaatgaatGAAGTTGCCAC--AGGGAAGGCATAGACATATGTCTTTCAAAACTCCATGTGCTTGGTC-TTTTTAAAAGTAAATTTATTTGATTGTAAATAGATTCACATTGATA-ATTGAATAAAATCATAAAGGTAT-----------ATCTTCTTTCCTCTTCCTTT-AAGTTTTAAGACACTTATAAATGTACCTGAAATTGTAATAAAAGATCCCAGAAGATTTTACAGCATGTTTT----CTGTTGATGGTAACGGATGGAAATAATTTAAATAATAACATTAACAGGTT---GTTTTACTACAGGACCACAATAATTTTAAAAGACAAACTTGAATAATCCTGTTTTACCACATCCCTAAACCTATGAAACACACGGT----ACTCATTAATGTTGATTTGTTTAGGAGAAATAA---ACTTCAAAAAAAAAAAAA----------------AACCAACAAAACTCACTCTGATATTAACTGCCTCAGGTTTAAAGGTTTTTTC--ATAATGCCTCAGTAATACTGGCTTAATGAATTAGGTTCTAAGAAAAATGGCCAGGCATAGTTAACAATAAATCAGGGTATACTATTTGCAGAAAAAGCAACTAAAACTCTCCTTGTAAATAATAATGTGGAAAGATCTGGTATTAATCAAGCCACTGTCTACAGCTGAGCTCTGTTTTCAGCTTCTGAACACAGTGGAGTTAATATTGAGCATATCTTTGTTTGAAGCATTTGAAGCATAATGAACCC--AATTCTGCAGTCCTTTGAGAACAGGCTTTTGTGAAAAATCAGTAAGGAATTGCACCTAAAACCCATTTACGAGATCATACTCCCAAAGGCTTTGTCTTAGAGCAGT--------------TTTTAAAA-TCTTGTTGGTAACCTCCTGAGCACATCATTGGGAGTAC----AAAAAACTGCAGAGAGtatatatatatatatatatgtatatatatatatatatatTTTTTTTTTGTATAAATACTTGCACATCACATTATCACATTTCCCCTAAGGA--------AATTGACCCAGCGTTTCCAAAGACTGCCAGGCTGGAGTTGTCCGGGTTGGTGGACCTGCCTGCGTCTG-----GGGTAG--------CTCA-----TTCAGAGGTGTGCACAG-------GGCCGAGGACCTTCTGGGCATAGCAG--AGTCATTCATCTAGTCAGTGGCCACATGCAGACACAGATCTTGCCATATCAGATTCTCCTTCTTTCTACTGGAGGT--CTGGTGATTTT---ACCTGTGTTAGTTCAGGCACCTCTGGATAACTTAAGGAC-----TCACCAAGTGGCAGGTCCTTA----TGTAGCTCCACAGACCACCATGAAACCCTTTGACCTTTTCTGAAGTCTGCCTTATGTCTTGGGCCACTGAACATTCTGCCAATCCTGAAGAATGT-GTTG-ATTCCAGTCTCATCCCAGTGCAAAGTGTCCTTCTCATCTTTGGGCTGCTG-TCTCCTGAGCAGGAATGCCGTCCCCACAGCTGATCTTTGACCAT-GGGTGGACTC--TTGTATATGTATATGACCTGGGACCATCAAAGCCCAGGTTAAGCTGCATCCCAAGTGTTTTTCTAGCCAGCCATGCCCT----GGGG----GTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140037948 1702 - 143122389 cactccaatacacaaagtccctt-------ttccca-----tgccctgccttgctgttctccataagtca-cacgtgacgtgacctgtgtgtgcttgtttactggttttgctccagaagagacctctgtgagagcaaggac--------cttgttttgttcacggctctatcgcacagctggg---tgtaataggtgctcaataaatattctgt--------------------------tgaatgaatgaatGAAGTTGCCAC--AGGGAAGGCATAGACATATGTCTTTCAAAACTCCATGTGCTTGGTC-TTTTTAAAAGTAAATTTCTTTGATTGTAAATAGATTCACATTGATA-ATTGAATAAAATCATAAAGGTAT-----------GTCTTCTTTCCTCTTCCTTT-AAGTTTTAAGACACTTATAAATGTACCTGAAATTATAATAAAAGATCCCAGAAGATTTTACAGCATGTTTT----CCGTTGATGGTAATGGATGGAAATAATTTAAATAATAACATTAACAGGTT---GTTTTACTACAGGACCACAATAATTTTAAAAGACAAACTTGAATAATCCTGTGTTACCACATCCCTAAACGTATGAAACCCACGGT----ACTCATTAATGTTGATTTGTTTAAGAGAAATAA---ACTTCAAAAAAAAAAAAA-----------------CCCAACAAAACTCACTCTGATATTAACTGCCTTGGGTTTAAAGGTTTTTTC--ATAATGCCTCAGTAATACTGGCTTAATGAATTAGGTTCTAAGAAAAATGGCCAGGCATAGTTAACAATAAATCAGGTTATACTATTTGCAGAAAAAGCAACTAAAACTCTCCTTGTAAATAATAATGTGGAAAGATCTGGTATTAGTCAAGCCACTGTCTACAGCTGAGCTCTATTTTCAGCTTCCGAACACAGTGGAGTTAATATTGAGCGTATCTTTG---------TTTGAAGCATAATGAACAC--AATTCTGCAGTCCTTTGAGAACAGGCTTTTGTGAAAAATCAGGAAGGAATTGCACCTAAAACCCATTTATGAAATCATACTCCCAAAGGCTTTGTCTTAGAGCAGT--------------TTTTAAAA-TCTTGTTGGTAACCTCCTGACCACATCATTGGGAGTAC----AAAAAAGTGCAGAGAGtatatatatatatatatatatatatatatattttttttttttttttttGCATAAATACTTGCAC--------ATCACATTTCCCCTAAGGA--------AATTCAACCAGCGGTTCCAAAGACTGCTGGGCTGGAGTTGTCCGGGTTGGTGGACCTGCCTGAGTCTG-----GGGTAG--------CTTAGCCTGTTCAGAGGTGTGCACAG-------GGCCGAGGACCTTCTGGGCATAACAG--AGTCATTCATCTGGTCAGTGGCCACATGAAGACACAGATGTTGCCATATCAGATTCTCCTTCTTTCTGCTGGAGGT--CTGGTGACTTT-----CTGTGTTGGTTCAGGTGCCTCTGGATTACTTAAGGGC-----TCACCAAGCGGCAGGTCCTTA----TGTAGCTTCACAGACCACCATGAAACCCTTTGACCTTTTCTGAAGTCTGCCTTACGTCTTGGGCCACTGAACATTCTGCCAATCCTGAAGAACGT-GTTG-ATTCCAGTCTCATCCCAGTGCAAAGTGTCCTTCTCATCTTTGGGCTGCCG-TCTCCTGAGCAGGAATGCCGTCCCCACAGCTGACCTTTGACCGT-GGGTAAACTC-------T-TGTATATGACCTGGGACCGTCAAAGCCCAGGTTAAGCTGCATCCCAAGTGTTTTTCTAGCCAGCCATGCCCT----GGGG----GTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16753980 1676 - 229590362 cactccaatacgcagagcccctt-------ttccca-----tgccctgccttcctgttctccataggtca-cacgtgacatgacctgcgtgtgcttgtttactggttttgctccagaagagacctcctggagagcagggac--------cttgatttgttcatggctctgttgcacggctggg---tataataggtgctcaataaatattctgt--------------------------tgaatgaatgaatGAAGTTGCCAC--AGGGAAGGCATAGACATATGTCTTTCAAAACTCCATGTGCTTGGTT-GTTTTTAAAGTAAATTTCTTTGATTGTAAATAGATTCACATTGACA-ATTGAATAAAATCATAAAGGTAT-----------GTCTTCTTTCCTCTTCCTTT-AAGTTTTAAGACACTTGTAAATGTCCCCGAAATTGTAATAAAAGATCCCAGAAGATTTTACAGCATCTTTT----CCGTTGATGGTAATGGATGGAAATAATTTAAATAATAACATTAACAGGTT---GTTTTACTAAAGGACCACAATAATTTTAAAAGACAAACTTGAATAATCCTGTTTTACCACATCCCTAAACCTATGAAACACACGGT----ACTCATTAATGTTGATTTGTTTAAGAGAAATAA---ACTTCAAAAAAAAAAAAAACA------CACAAAAACCCACTAAAACTCACTCTGATATTAACTGCCTCAGGTTTAAAGGTTTTTTC--ATAATGTCTCAGTAATACTGGCTTAATGAATTAGGTTCTAAGAAAAATGGCCAGGCATAGTTAACAATAAATCAGGTTATACTATTTGCAGAAAAAGCAACTAAAACTCTCCTTGTAAATAATAATGTGGAAAGATCTAGTATTAATCAAGCCACTGTCTATAGCTGGGCTCTATTTTCAGCTTCTAAACACAGTGGAGTTAATATTGAGCATATCTTTG---------TTTGAAGCATAATGAACAC--AATTCTGCAGTCCTTTGAGAACAAGCTTTTGTGAAAAACCAGTAAGGAATTGCACCTAAAACCCAGTTACAAAATCACACTCCCAAAGGCTTTGTCTTAGAGCAGT--------------TTTTAAAACTCTTCTTGGTATCCTCATGACCACATCATTGGGAGTAT----AAAAAAGTGCAGAGA------ATATATATATATTTTTA---------------------------CATAAATAC-TGCAC--------ATCACATTTCCCCTAAGGA--------AATTCAGCCAGTGGTTCTGAAGACTGCTGGACTGGAGCTGTCCAGGTTGGTGGGCTCGCCGGAGTCTG-----GGGTAG--------CTGAGCCTGTTCAGAGGTGTGTACAG-------GGCTGAGGACCTTCTGGGCATAACAG--AGTCATTCATCTGGTCAGTGGCCACATGAAGACACAGATCTTGCCAAATCAGATTCTCCTTCTTTCTACTGGAGGT--CTGGTGACTTT---ACCGGTGTTAGTTCAGCCCCTTCTGGATAAC-AAACGGC-----TCAGCAAGCAGCAGGTCCTTA----TGGAGCTTCACAGACCACCATGAAACCCTTTGACCTTTTCTGAAGTCTGCCTTACGTCTTGGGCCACCGAACATTCTGCCAATCCTGAAGAACGT-GTTC-ATTCCAGTCTCATCCCAGTGCAAAGTGTCCTTCTCATCTTTGGGCTGCTA-TCTCCTGAGCAGGAATGCCGTCCCCACAG-----CTTTGACGAT-GGGTAGACTC-------T-TGTATGTGACCTGGGTCCATGAAAGCCCGGGTTAAGCTGCATCCCAAGTGTTTTTCTAGCCAGCCATGCCCT----GGGG----GTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223516593 1677 - 227556264 cactccaatacgcagagcccctt-------ttccca-----tgccctgccttcctgttctccataggtca-cacgtgacatgacctgcgtgtgcttgtttactggttttgctccagaagagacctcctggagagcagggac--------cttgatttgttcatggctctgttgcacggctggg---tataataggtgctcaataaatattctgt--------------------------tgaatgaatgaatGAAGTTGCCAC--AGGGAAGGCATAGACATATGTCTTTCAAAACTCCATGTGCTTGGTT-GTTTTTAAAGTAAATTTCTTTGATTGTAAATAGATTCACATTGACA-ATTGAATAAAATCATAAAGGTAT-----------GTCTTCTTTCCTCTTCCTTT-AAGTTTTAAGACACTTGTAAATGTCCCTGAAATTGTAATAAAAGATCCCAGAAGATTTTACAGCATCTTTT----CCGTTGATGGTAATGGATGGAAATAATTTAAATAATAACATTAACAGGTT---GTTTTACTAAAGGACCACAATAATTTTAAAAGACAAACTTGAATAATCCTGTTTTACCACATCCCTAAACCTATGAAACACACGGT----ACTCATTAATGTTGATTTGTTTAAGAGAAATAA---ACTTCaaaaaaaaaaaaaaaa-----ccacaaaaaCCCAATAAAACTCACTCTGATATTAACTGCCTCAGGTTTAAAGGTTTTTTC--ATAATGTCTCAGTAATACTGGCTTAATGAATTAGGTTCTAAGAAAAATGGCCAGGCATAGTTAACAATAAATCAGGTTATACTATTTGCAGAAAAAGCAACTAAAACTCTCCTTGTAAATAATAATGTGGAAAGATCTAGTATTAATCAAGCCACTGTCTATAGCTGGGCTCTATTTTCAGCTTCTAAACACAGTGGAGTTAATATTGAGCATATCTTTG---------TTTGAAGCATAATGAACAC--AATTCTGCAGTCCTTTGAGAACAAGCTTTTGTGAAAAATCAGTAAGGAATTGCACCTAAAACCCAGTTACAAAATCACACTCCCAAAGGCTTTGTCTTAGAGCAGT--------------TTTTAAAACTCTTCTTGGTATCCTCATGACCACATCATTGGGAGTAT----AAAAAAGTGCAGAGA------ATATATATATATTTTTA---------------------------CATAAATAC-TGCAC--------ATCACATTTCCCCTAAGGA--------AATTCAGCCAGCGGTTCTGAAGACTGCTGGGCTGGAGCTGTCCAGGTTGGTGGGCTCGCCAGAGTCTG-----GGGTAG--------CTGAGCCTGTTCAGAGGTGTGTACAG-------GGCTGAGGACCTTCTGGGCATAACAG--AGTCATTCATCTGGTCAGTGGCCACATGAAGACACAGATCTTGCCAAATCAGATTCTCCTTCTTTCTACTGGAGGT--CTGGTGACTTT---ACCGGTATTAGTTCAGCCCCTTCTGGATAAC-AAAGGGC-----TCAGCAAGCAGCAGGTCCTTA----TGGAGCTTCACAGACCACCATGAAACCCTTTGACCTTTTCTGAAGTCTGCCTTACGTCTTGGGCCACCGAACATTCTGCCAATCCTGAAGAACGT-GTTC-ATTCCAGTCTCATCCCAGTGCAAAGTGTCCTTCTCATCTTTGGGCTGCTA-TCTCCTGAGCAGGAATGCCGTCCCCACAG-----CTTTGACGAT-GGGTAGACTC-------T-TGTATGTGACCTGGGTCCATGAAAGCCCGGGTTAAGCTGCATCCCAAGTGTTTTTCTAGCCAGCCATGCCCT----GGGG----GTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16566360 1678 - 220367699 CACTCCAATACACAGAGCCCCTT-------TTCCCA-----TGCCCTGCCTTCCTGTTCTCCATAGGTCA-CACGTGACATGACCTGCGTGTGCTTGTTTACTGGTTTTGCTCCAGAAGAGACCTCCTGGAGAGCAGGGAC--------CTTGATTTGTTCATGGCTCTGTTGCACGGCTGgg---tataataggtgctcaataaatattctgt--------------------------tgaatgaatgaatgaaattgcCAC--AGGGAAGGTATAGATATGTGTCTTTCAAAACTCCATGTGCTTggtt-gtttttaaagtaaatttcttTGATTGTAAATAGATTCACATTGACA-ATTGAATAAAATCATAAAGGtat-----------gtcttctttcctcttccttt-aagTTTTAAGACACTTGTAAATGTCCCTGAAATTGTAATAAAAGATCCCAGAAGATTTTACAGCATCTTTT----CCGTTGATGGTAATggatggaaataatttaaataataacatGAACAGGTT---GTTTTACTAAAGGaccacaataattttaaaagacaaacttgAATAATCCTGTTTTACCACATCCCTAAACCTATGAAACACACGGT----ACTCATtaatgttgatttgtttaagagaaataa---acttcaaaaaaaaaaaaaaca----aaaacaaaaacccagtaaAACTCACTCTGATATTAACTGCCTCAGGTTTAAAGGTTTTTTC--ATAATGTCTCAGTAATACTGGCTTAATGAATTAGGTTCTaagaaaaatggccaggcacagttaACAATAAATCAGGTTATACTATTTGCAGAAAAAGCAACTAAAACTCTCcttgtaaataaaaatgtggaaagaTCTAGTATTAATCAAGCCACTGTCTATAGCTGGGCTCTATTTTCAGCTTCTAAACACAGTGGAGTTAATATTGAGCATATCTTTG---------TTTGAAGCATAATGAACAC--AATTCTGCAGTCCTTTGAGAACAAGCTTTTGTGAAAAATCAGTGAGGAATTACACCTAAAACCCAGTTACAAAATCACACTCCCAAAGGCTTTGTCTtagagcagt--------------ttttaaaaatcttcttggTATCCTCCTGACCACATCATTGGGAGTAT----AAAAAAGTgcagaga------atatatatatattttta---------------------------cataaatac-tgCAC--------ATCACATTTCCCCTAAGGA--------AATTCAGCCAGCGGTTCTGAAGACCGCTGGGCTGGAGCTGTCCGGGTTGGTGGACTCGCCGGAGTCTG-----GGGTAG--------CTTAGCCTGTTCAGAGGTGTGTACAG-------GGCTGAGGACCTTCTGGACATAACAG--AGTCATTCATCTGGTCAGTGGCCACATGAAGACACAGATCTTGCCAAATCAGATTCTCCTTCTTTCTACTGGAGGT--CTGGTGACTTT---ACCGGTGTCAGTTCAGCCCCTTCTGGATAAC-AAAGGGC-----TCAGCAAGCAGCAGGTCGTTA----TGGAGCTTCACAGACCACCATGAAACCCTTTGACCTTTTCTGAAGTCTGCCTTACGTCTTGGGCCACCGAACATTCTGCCAATCCTGAAGAACGT-GTTC-ATTCCAGTCTCATCCCGGTGCAAAGTGTCCTTCTCATCTTTGGGCTGCTG-TCTCCTGAGCAGGAATGCCGTCCCCACAG-----CTTTGACGAT-GGGTAGACTC-------T-TGTATGTGACCTGGGGCCATGAAAGCCCGGGTTAAGCTGCATCCCAAGTGTTTTTCTAGCCAGCCATGCCCT----GGGG----GTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82365686 1669 + 85787240 cactccaatacgcaaagcccctt-------ttccca-----tgccctgccttcctgttctccataggtca-cacgtgacatgacctgcgagtgcttgtttactggttttgctccagaagagacctccctgggagcagggac--------cttgatttgttcatggctctgttgcacggctggg---tataataggtgctcaataaatattctgt--------------------------tgaatgaatgaatGAAGTTGCCAC--AGGGAAGACATAGACATATGTCTTTCAAAAATCCATGTGCTTGGTT-GTTTTTAAAGTAAATTTCTTTGATTGTAAATAGATTCACATTGACA-ATTGAATAAAATCATAAAGGTAT-----------GTCTTCTTTCCTCTTCCTTT-AAGTTTTAAGACACTCGTAAATGTCCCTGAAATTGTAATGAAAGATCCC---AGATTTTACAGCATCTTTT----CCATTGATGGTAATGGATGGAAATAATTTAAATAATAACGTTAACAGGTT---GTTTTACTAAAGGACCACAATAATTTTAAAAGACAAACTTGAATAATCCTGTTTTACCACATCCCTAAACCTATGAAACACATGGT----ACTCATTAATGTTGATTTGTTTAAGAGAAATAA---ACTTCaaaaaaaaaaaaaaaaaaaaaaagcaaaaaCCCAACAAAACTCACTCTGATATTAACTGCCTCAGGTTTAAAGGTTTTTTC--ATAATGTCTCAGTAATACTGGCTTAATGAATTGGGTTCTAAGAAAAATGGCCAGGCATCGTTAACAATAAATCAGGTTATACTATTTGCAGAAAAAGCAACTAAAACTCTCCTTGTAAATAATAATGTGGAAAGATCTGGTATTAATCAAGCCACTGTCCATAGCTGGGCTCTATTTTCAGCTTCTAAACACAGTGGAGTTAATATTGAGGATATCTTTG---------TTTGAAGCATAATGAACAC--AATTCTGCAGTCCTTTGAGAATAAGCTTTTGTGAAAAATCAGTAAGGAATTGCACCTAAAACGCAGTTACAAAATCATACTCCCAAAGGCTTTGTCTTAGAGCAGT--------------TTAAAAAAATCTTCTTGGTATCCTCCTGACCACATCATTGGGAATAT----AAAAAAGTGCAGAGA--atatatatatatatattttta---------------------------cataaataC-TGCAC--------ATCACATTTGCCCTAAGGA--------AATTCAACCAGCGGTTCTGAAGACTGCTGGGCTAGAGTTGTCCGGGTTGGTTGACCCGCTGGAGTCTG-----GGGTAG--------CTTAGCCTGTTCAGAGGTGTGTACAG-------GGCTGAGGACCTTCTGGGCATAACAG--AGTCATTCATCTGGTCACTGGCCACATGAAGACACAGATCTTGCCAAATCAGATTCTCCTTCTTTCTACTGGAGGT--CTGATGACTTT---ACCGGTGTTAGTTCAGCCCCCTCTGGATAAC-GGAGGGC-----TCAGCAAGCAGCAGGTCCTTA----TGGAGCTTCACAGACCACCATGAAACCCTTTGACCTTTTCTGAAGTCTGCCTTACGTCTTGGGCCACCGAACATTCTGCCAATCCTGAAGAACGT-GTTC-ATTCCAGTCTCATCCCGGTGCAAAGTGTCCT--------------------TCTCCTGAGCAGGAATGCTGTCCCCGCAGCTGACCTTTGACCAT-GGGTAGACTC-------T-TGTATGTGACCTGGGGCCGTGAAAGCCCAGGTTAAGCTGCATCCCAAGTGTTTTTCTAGCCAGCCATGCCCT----GGGG----GTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14039818 1661 - 49578535 cactccaatatgcaaagtccctt-------ttcccatgccctgccctgccttactgttcttcataggtca-catgggac-tgacctgta-----ttgtttactcattttgctccagaagagacctctgtgagagcagggac--------cttgttttgtccacagctgtatcacagagctggg---tataataggtgctcaataaatacactgttggatcaaGAAgaatgaatgaatgaatgaatgaatgaatgaaGTTGCTGC--CAGGAATGTATAGACATATGTCTTTTAAAACTCCATGTGTTAGTTT-TTTTAAAAAGTAAATTTCTTTGACTGTAAATAGATTCACATTGATA-ATTGAATAAAATCATAAAGGTAT-----------GTCTTCTTTCCCCTTCCTTTAAAGTTTTAAGACATTTATAAATGTACCTGAAATTGCAATAAAAGATTCCAGAAGATTCTACAGCTTGTTTT----TAGTTGGTGATAATGGATGGAAATAATTTACATAACAACATTAACAGGTT---GTTTTACTAAAGGACTGCAGTGTTTTTAAAAGACAAACTTGAATAATCCTGTTTTACCACATCTCTAACCCTCTGAAACACACAGA----ACTCATTACTGTTGATTTGTTTAAGGGAAATAA---ACTTCAAGAAA-------------------------CCAGCAAAACTCTCCCTGGTACTAACTGCCTCGGGTTTAGAGGTTTTCTC--ATAATGCCTGAGTAATACAGGCTTAATGA-------------AGAAACGGCCAGGCGTAGGTAAC-ATAAATCAGGTTATACTATTAGCAGAAAAAGCACCTAAAACTCTCCTTGTAAATAAAAATGCGGAAAGATCTGGTAGTCATTAGGCCACTGTCTACAGCTGAGCCCTGTTCTCAGCTTCT-AACGCAGTGGAGTGAACACTGAGCAGATCTTTA---------TTTGAAGCACAAAGAACAC--AGTGGTCTGGTCCTTTGAGAACAAGCTTTTGTGAAAAGTCAGTGGGGAA-TGCACCT-AGACGGATTTCCAGAATCATACTCCCAAAGGCTTTGTCTCAGGACAGC--------------TTTAAAAA-TCTCGTTGGTGACCTGTTGACCATATCATTGGGAGTAC-----GAAAAGTGCAGTTT-------------TCTGTTTTTG-----------------TTTTGTTTTGCGTAAGTGCTTGTAC----------------TTAGCTAAGGA----GTCTGATTCAACCAGCAGTTGCGGAGACTG-----CTGGAGTTACCCGGGTTGGTGGCCCCACCTGAGCCTG-----GGGTAG--------CTTAGCCTGTTCAGAGGT---------------TGCCGAGGACCTTCTGGGCATAGCAG--AGTCATTCATCTGGGCGGTGGCCACAGGAAGACACAGATCTTCCCAAATCAGATTCTCCTTCTTTCTGAAGGAGAT--CTGATGACTCTTCTACCTGTACTAGCTCAGCCGCCTCTGGAAAGC-TAAGGGC-----TCACCAAGTAGTAGGTCCTTG----CTTAGCTTCACGGGTCACCATGAAACCCTTTGACATTTTCTGAAGGCTGCCTTACGTGTTGAG-CACGGAATGTTTCACCAATCCTGTAGAATGT-GTAG-ATTCCATTCTCATCCCAGTGCAAAGTGTCCTTCTAGTCTCTGGGCTGCTG-TCTCCTGAGCAGGAATGCT-TCCCCACAGCTGATCTTTGACTGT-GGGTAGACTC-------G-TGTATGTGACCTGGGGCCGTCAAAGACCCCGTAAAGCTGCATCCCGGGTGCTTTTCTAGCCAGGCATCCCCTGGTGGGGG----GTG i calJac3.chr19 C 0 I 2 s mm10.chr1 178662919 1539 + 195471971 cactctgattccaaaagccccct-------ttcctc-----tg-cctgccttattgtttcccat--GTTT-CATGTGGGCTGGGCCACCTCCGATCATTTA----------------------CTCCATGTTAGCATGGCTAGGCATTGCTTATTTGACCCATTACTGTTTC-------------------TAGGGGTTCAATACATTAATTTC--------------------------CATAGTATCCCATGCTTTTATCACCACAGGAATGCATAGCTGTATG-CTTCCAAAACTCCATGAGCTGAGTTAGGTTTAAATGTTTTTTTCTTTGATTGTAAATTTATTCCCATTTAGAGACTGAATAAAATAATGAATATGTAAGCG-----AATCATATTTCCTCCCTTATT-AAGTTTTCAGACACATATAAATGTGCCTAAACCTGTAATAAAAGATTCCAGAAGATTTTATAACATGTTTTTTAGTTGATGGTGGTTATAAATAGGAATGGTTTA---AATAACATTAACAAGTTATGGTCTGGCTAAAGGGCCATCATATTTCGAAGAGGAAAACATCAATAATCTTACTTTACTACTTTCCCAAACCTTTGAAATACATAGA----ACTCATTAATGTTGAAGCATTTAATAGAAGCAA--------AAGAAAACAACAA------------------------AAATCCACTGTGATAGTAACTGCCAAGAGTTTAAAGGTTTTTTTTAATAATGCCTCAACAATATTGGATTAATGAATTAGCTTCTCAGAAAAAAGGCTGGACTCAGTTAAC-ATAAATTGGGTTCTACTATTTGCAGAAGCAGCAACTAAAATTCTGCTTGTAAATAATACTAGGGAAAGATCTGGAATGAATCAAGCCGCTGTC-ACAGCTGGGCTGTGTTTTCAGCTCTCAAACACAGGAGAATTAATATTGACTATAACTGTA---------TTTGAAGCTCAAAGAACACAAAAAAATGAAGTCCTTTGAGAATAAGCTTTTGTACAAATTCAGCAGGGAACCACATGAGAAAGCACTTTCCAGAGACAGACTCCCAAAGGCTTTGTCTAGGAACAGT--------------TTTAAAG--TCTTGTGGGACACCTCTTGGCCCTGCCATTGTGAGT-------AGACAGTCCTGAGT------ACA-------GTTTGTA---------------------------TATAATTGC-----C--------ACAGTCTTTTCCCTAAAGAT---AGGGGATTCAGGCAGTGCTTGTGAAGTCAGCTGGCCTGGTGCTG-CTGGGTTGGTGGACACAATAAGTTCTGGTCAAGGGCAG--------CTCAGCAGGTCCAGAGCTATGTACTGTCTGTCTGTCTGGGAACAGTCCCAGGACTGCAG--AGTCCTTGA----------------ATGTA-----AGCTCTTGCCAGGCTGAAGCTT--TTCTTTGTGGAGGCAGTTCCTGGAGAGTCC----------------CAACCATCTCCGGATAGA-CAAGGCCAAGAAGCACAGAGAAGTGGACCTTTA----GGTGGCTGCATGGCTC-TCAGGAGACACCGTAGCCCACTCTGAAGCACACCCT--GTTTCAGACCGTAGAGACTGCCAGTAATCTCTAAGAATGG-GGTG-GTAATACTCTCA-----------------------------GGCCTACCACTTTCCTGTCCA----------------------------------ACGTGCACTT-------T-----------CCCAAACCATCAAGGCCCAAACAAGGCTTCA--CAGAGCTTTCTTCCAGATGCAAATGTCCT----GGTGCACTGTG i mm10.chr1 C 0 I 2 s canFam3.chr7 36235847 1701 + 80974532 tactccaactccagaaatccctttcaaatatcctcc-----caccccgctttatcattctgcatgtgtcaccactcgatttatcttact--tgcttgtttactcgtttttctccagaagagaggtctaggag-gtggagac--------ct---tttgtcctctgtgccgtcaccagtgtggggcttagaataggtgcttCATCAGTGTAA-GT--------------------------GGAGCAAATGCATAAAGTCACTGC--AGGAGATGCATGGACAGATG-CTTTCAGAACTCTGTGCCTTTAATT--TTTTTAAAGTAAATCTCTTTGATTGTGAATGGATTCATATTTTCA-A--AGTGAAGACCGTAAATGTATAAGTGAGGAAAGTCTTCTTTCCTCTTCCCTG-AAGTTTTAAGACATTTGCAAATATATCTGAAATTGTAATAGAAGATTCCAGAAGGCTTAATAACGTGTTTT----CAGTTGATGGTGATAGCCAGACATAGTTTA---AATAACATTAACAGGGTATGGTTTTGCTAAAGGAACATAGTGTTTTTAAAATGGAAACTTCAGTAACTCCATTTTACTACTTCCTTAAACCTTTGAAATACCCAGA----ACTC---AATGTTGAATTATTTACTAAAAATGCCCCCCTTC------------------------------CACAAGTAAACCCACCCTGATATGAACTGCCTAGGGTTTAAAGGTTTTTA---ATAATGCCCCAACAATGTTGGCTTAATGAATTAGATTCCACGAAAAGTGACCAGGCTTTGTTAACAATAAATCAGGTTCCACTATTTACAGAAAAAGCAGCTGAAACTCTGCTTGTAAATAATAATGTGGAAAGATCTGGTATTAATCAAACCACCGTCCACAGCTGGGCTCTGTTTGCAGCTCTCAAACACCGTGGACTTAATCTTGAGCACATCTATA---------TTTGAAACTT----AACAC--AATCACGCAGTCCTTTGAGAATGAGCTTTGGCAACCAATCAGCTGGGGATTGCGCCTGAAACACATGTATAAAATCATACTTCCAAAGGCTATGTTGTGGATCAGTATTGCTCTGTTCTGTTTTTAAA-TCATGTGGATAGCCTCTTGACCATGCAGTT--CAGTATTAGAAAAAAAGTGTTGAGA------GTA-------CTTTTTG---------------------------CATAAATAATTGCCC-----TGATTCATTTTTTACTAAACGGTATGATTTGACACAGCCAGTGGCTGTGAAGGCAACTGGCCTGGTCCCGTTGAGGTTGGTAGATCCACCTGAGTCAG-----GGTTGGGTGCCAGCCTCAGCCTGTCCAGAGGTGTGCACAGTT-----TGCCCGGGACATTCCGGGCATAGCAGAAAGTCATTCATCTGTGCAGCGGCTATACCAGGACACAGAGCCTGCCACATCAGAATCCCCATCTTTCCAAAGGAGATTCCTGGAGTGTTTTCTACTTAGTTCAGCTCGGCCTCCTCTGACTAAT-CAGGGGC----TTCCCTGAGAAATAGGTGCTCAGTAGTATAGCTTCAGAGGCCTCTGTGAAACCCTTTGACCTTCCCTGAAGTCTTCCTTGTGTCTTGAGCCACAGAAATTTCTGCCAATCCCTCAGAACATGGCTG-GTTAGAATCTCATCCCACT-CAAAGTGTCCTTCTAATCCCTGGGCTGCTG-CCTCCTGA----AGGTGCTCAGCTCTTTGCTGAGCTTTGACCCTGGGGTAGATAT-------T-GCTATGTGATCTGTGACCATCAGAACCCAGGTGAAGCTGTATCCTGAGTATT-TTCTAGCTATGCATTTTCT----GGAG----GTG i canFam3.chr7 C 0 I 2 a score=1074481.000000 s hg38.chr1_KI270759v1_alt 44959 361 + 425601 CTTTCCATTTTATTGGTCACGGAG---CACTCAGGCCCTGCTCCAGGATCC---CAG----GTATGGTCTCTGGGGAAAACTGACCACAGGTTGTGCAGGAGGAACCACCAGACCTGCCCGAGAGGGGACATCTCTTCTCTTTGGTCTGCTGCTTTGAGACAATTCCAAGATCGCAGTGTATATAT--GTGTGAAGTCTTCA------------TGGGTAACTATCTCCAAAGCATTTAATGATTCTCTTTCCTTGGCTTATAAGTAGGCTGATAATGGAAGTTCAAATGATGTGGGACTCTGTTGG-------------TTTGTCCTTCTGGAAAATCCCACTCCTCTTCCTGGTCACCAAAGCAGTGAGGGGA-GGAGGGCAAGGAATTGACTCCTC s panTro4.chr1 224786054 361 + 228333871 CTTTCCATTTTATTGGTCGCAGAG---CACTCAGGCCCTGCTCCAGGATCC---CAG----GTGTGGTCTCTGGGGAAAACTGACCACAGATTGTGCAGGAGGAGCCACCAGACCTGCCCGAGAGGGGACATCTCTTCTCTTTGGTCTGCTGCTTTGAGACAATTCCAAGATCCCAGTGTATATAT--GTGTGAAGTGTTCA------------TGGGTAACTATCTCCAAAGCATTTAATGATTCTCTTTCCTTGGCTTATAAGTAGGCTGATAATGGAAGTTCAAATGATGTGGGACTCTGTTGG-------------TTTGTCCTTCTGGAAAACCCCACTCCTCTTCCTGGTCACCAAAGCACTGAGGGGA-GGAGGACAAGGAATTGACTCCTC i panTro4.chr1 T 3675 C 0 s ponAbe2.chr1 226150089 362 - 229942017 CTTTCCATTTTATTGGTCACGGAG---CACTCAGGCCCTGCTCCAGGATCC---CAG----GTATGGTCTCTGAGGAAAACTGACCACAGGTTGTGCAGGAGGAGCCACCAGACCTGCCCGAGAGGGTACATCTCTTCTCTTTGGTCCACTGCTTTGAGACAATTCCAAGATCCCAGTGTATATGT--GTGTGAAGTCTTCA------------TGGGTAACTATCTCCAAAGCATTTAATGATTCTCTTTGCTTGGCTTATAAGTAGGCTTATAATGGAAGTTCAAATGATGTGGGACTCTGTTGG-------------TTTGTCCTTCTGGAAAATCCCACTCCTCTTCCTGGTCACCAAAGCAGTGAGGGGAGGGAGGGTAAGGAATTGACTCCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140039650 361 - 143122389 CTTTCCATTTTATTGGTCATGGGG---CACTCAGGCCCTGCTCCAGGATCC---CAG----GTGTGGTCTCTGAGGAAAACTGACCACAGGTTGTCCAGGAGGAGCCACCAGACCTGCCCGAGAGGGGACATCTCTTCTCTTTGGCCCGCTGCTTCGAGACAATCCCAAGATCCCAGTGTATATGT--GTGTGAAGTCTTCA------------TGGGTAACTATCTCCAAAGCATTTAATGATTCTCTTTCCTTGGCTTATCAGTAGGCTTATAATGGAAGTTCAAATGATGTGGGACTCTGTTGG-------------TTTGTCCTTCTGGAAAATCCCACTCCTCTTCCTGGACACCAAAGCAGTAAGGGGA-GGAGGGCAAGGAATTGGCTCCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16755656 303 - 229590362 CTTTCCATTTT--------------------------------------------------------------------ATTGACCACAGGTTGTGCAGGAGGAGCCACCAGACCTGCCCGAGAGGGGACATCTCTGGTCTTTGATCCGCTGCTTGGAGACAATTCCAAGATCCCAGTGTATATGC--GTGTGAAGTCTTAA------------TGGGTAACTATCTCCAAAGCATTTAATGTTTCTCTTTCCTTGGCTGATAAGTAGGCTTATAATGGAAGTTCAGATGATGTGGGACTCTGTTGG-------------TTTGTCCTTCTGGAAAATCCCACTCCTCTTCCTGGTCACCACAGCAGTGAGGGGA-GGAGGGCAAGGAATTGACTCCTC i rheMac3.chr1 C 0 I 149 s macFas5.chr1 223518270 303 - 227556264 CTTTCCATTTT--------------------------------------------------------------------ATTGACCACAGGTTGTGCAGGAGGAGCCACCAGACCTGCCCGAGAGGGGACATCTCTGGTCTTTGATCCGCTGCTTGGAGACAATTCCAAGATCCCAGTGTATATGC--GTGTGAAGTCTTCA------------TGGGTAACTATCTCCAAAGCATTTAATGTTTCTCTTTCCTTGGCTGATAAGTAGGCTTATAATGGAAGTTCAGATGATGTGGGACTCTGTTGG-------------TTTGTCCTTCTGGAAAATCCCACTCCTCTTCCTGGTCACCACAGCAGTGAGGGGA-GGAGGGCAAGGAATTGACTCCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16568038 365 - 220367699 CTTTCCATTTTATTGGTCACGGAG---CATTCAGGCCCTGCTCTAGGATCC---CAGGTATGTATGGTCTCTGAGGAAAATTGACCACAGGTTGTGCAGGAGGAGCCACCAGACCTGCCCGAGAGGGGACATCTCTGGTCTTTGATCCGCTGCTTGGAGACAATTCCAAGATCCCAGTGTATATGC--GTGTGAAGTCTTCA------------TGGGTAACTATCTCCAAAGCATTTAATGTTTCTCTTTCCTTGGCTGATAAGTAGGCTTATAATGGAAGTTCAGATGATGTGGGACTCTGTTGG-------------TTTGTCCTTCTGGAAAATCCCACTCCTCTTCCTGGTCACCACAGCAGTgagggga-ggagggcaaggaATTGACTCCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82367355 365 + 85787240 CTTTCCATTTTATTGGTCACGGAG---CACTCAGGCTCTGCTCCAGGATCC---CAGGTATGTATGGTCTCTGAGGAAAACTGACCACAGGTTGTGCAGGAGGAGCCACGAGACCTGCCCGAGAGGGGACGTCTCCTGTCTTTGATCTGCTGCTTGGAGACAATTCCAAGATCCCAGTGTATATGC--GTGTGAAGTCTTCA------------TGGGTAACTATCTCCGAAGCATTTGATGTTTCTCTTTCCTTGGCTGATAAGTAGGCTTATAATGGAAGTTCAAATGATGTGGGACTCTGTTGG-------------TTTGTGCTTCTGGAAAATCCCACTCCTCTTCCTGGTCACCACAGCAGTGAGGGGA-GGAGGGCAAGGAATTGACTCCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14041481 348 - 49578535 CTTTCCACGTTACTGGTCATGGAG---CACTCAGGTCCTGCTCCAGGATCC---CAG----GTAT-GTCTCTGGGGACAACTGACCGTAGCTTGTGCAGGAGGGGCCACCAGACCTGCCCGAGAGGGGACATCTCTTGTCTTTGCTCCACTGCTTTGAGGTGATTTCAAGATCCCGGTGTAGATGC--GTGTGAGGTCTTCA------------TGGGCATCTGTCTCCAAAGCACTTAGTGATTCTCTTTCCTTGGCTG------------ATAGTGGAAGTTCAAATGAGGTGAGACTCTGTTGG-------------TTTGTCCTTCTGGAATGTTCCACTCCTCTTCCTGGTCACCGCAGCAGTGAGGGGA-GGAGGGCAAGGAAGTGACGTCTC i calJac3.chr19 I 2 C 0 s mm10.chr1 178664460 347 + 195471971 TGTTCTATTGTTCTGCACCCTGAGGGCTGCTCAGGCTTGCTTCTCAGAACCACTCAG----GGCTGGGCTCTGGGAAAAACTG----CTGGTTAGGCAGG-----CC------TCTTGTTTAATGGGAACATCTCT----TCTAGTCTGCAGCC---AGAGCATT-CATGGTTCAGTTCTTCCTAG--ATGCAGAGACTC--------------TGGGCAACCATCTCTAAGTCATCTA----TTCTCTTGGCTTGCCTCTGAAGT-GGCTTCTAGCAGACAGTTGGATG--GCAGGAGACTGTTGGttttttttttttttttttttttCTGGAAAGTTCCATTCGTCTGCCCGGCCACCTCAGCAGTAAGAGGA-AGTGG-CAAGGAAGTGACTTGTC i mm10.chr1 I 2 C 0 s canFam3.chr7 36237550 322 + 80974532 CTTTGTCTTTCCCCAGCCACAGAG---TGCTCAGACCCT-TTCTTGGGACC---CAC----ATCTGGTTCCTGATGA---------------TGTGC--------CTACCAGGTCCACCTAATGGGGGACAGCTCTCCTCTCTGCTCCTCTATTTTGAAGTGATTCCAAGATCCCAGCGAACATGTTGGTATGGTGTCATGACCCAGGAGGCTTTTGGTAGCCA--ACCACAGCATGTACTGATTCCATTTGCTTGGCTTATA-----------AATGGAAATTCAGGTGGTTTGGGACTCTGTTGG-------------TCTGACCTTCTGGGAAATTC----------------GACCACTGCAGTGAGCAGA-GAAGACCAAGAGAGTGACTTCTC i canFam3.chr7 I 2 C 0 a score=8512.000000 s hg38.chr1_KI270759v1_alt 45320 3 + 425601 ACA s panTro4.chr1 224786415 3 + 228333871 ACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226150451 3 - 229942017 ACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140040011 3 - 143122389 ACA i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16568403 3 - 220367699 ACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82367720 3 + 85787240 ACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14041829 3 - 49578535 ACA i calJac3.chr19 C 0 C 0 s mm10.chr1 178664807 3 + 195471971 ACA i mm10.chr1 C 0 I 2 s canFam3.chr7 36237872 3 + 80974532 ACC i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16755959 149 - 229590362 I e macFas5.chr1 223518573 0 - 227556264 C a score=475289.000000 s hg38.chr1_KI270759v1_alt 45323 153 + 425601 TGTATTCTAACAAGCATGGAACAGAGCACACAAGACATGGATCTTACTGTAGACCGGGGAAGACACTGAGCCACTTCTGGCTTTATCTCTTCTGACCTATGCATTGGGATAAACTTAGCTGAGCGCGTTTCCCTGTCCGCATGGAGGGTCTGG s panTro4.chr1 224786418 153 + 228333871 TGTATTCTAACAAGCATGGAACAGAGCACACAAGACATGGATCTTACTGTAGAGCGGGGAAGACACTGAGCCACTTCTGGCTTTATCTCTTCTGACCTATGCATTGGGATAAACTTAGCTGAGTGCGTCTCCCTGTCCACATGGAGGGTCTGG i panTro4.chr1 C 0 I 3700 s ponAbe2.chr1 226150454 153 - 229942017 TGTATTCTAACAAGCATGGGACAGAGCACACAGGACATGGGTCTTACTGTAGACCGGGGAAGACACTGAGCCACTTCCGGCTTTATCTCTTCTGACCTATGCATTGGGATAAACTCAGCTGAGTGCGTTTCCCTGTCTGCATGGAGGGTCTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140040014 153 - 143122389 TGTATTCTGACAAGCATGGGACAGAGCACACGGGACATGGATCTTACTGTAGACGGGGGAAGACACTGAGCCACTTCTGGCTTTATCTCTTCTGACCTATGCATTGGGATAAACTTAGCTGAGTGTGTTTCCCTGTGTGCATGGAGGGTCTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16756108 153 - 229590362 TGTATTCTAACAAGCGTGGGACAGAGCACACAGGACATGGATCTTACTGTAGACCTGGGAAGACACTGAGCCACTTCCGGCTTTATCTTTTCTGACCTATGCATTGGGATAAACTTAGCTGAGTGCATTTCCCTGTCTGCATGGAGTGTCTGG i rheMac3.chr1 I 149 C 0 s macFas5.chr1 223518573 144 - 227556264 ---------ACAAGCGTGGGACAGAGCACACAGGACATGGATCTTACTGTAGACCTGGGAAGACACTGAGCCACTTCCGGCTTTATCTTTTCTGACCTATACATTGGGATAAACTTAGCTGAGTGCATTTCCCTGTCTGCATGGAGTGTCTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16568406 153 - 220367699 TGTATTCTAACAAGCGTGGGACAGAGCACACAGGACATGGATCTTACTGTAGACCTGGGAAGACACTGAGCCACTTCCGGCTTTATCTTTTCTGACTTATGCATTGGGATAAACTTAGCTGAGTGCATTTCCCTGTCTGCATGGAGGGTCTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82367723 153 + 85787240 TGTATTCTAACAAGCGTGGGACAGAGCACACAGGACATGGATCTTTCTGTAGACCTGGGAAGACACTGAGCGACTTCTGGCTTTATCTTTTCTGACCTGTGCATTGGGATAAACTTAGCTGAGTGCATTTCCCTGTCTGCATGGAGGGTCTGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14041832 133 - 49578535 -----TGTAACAAGCATGGGACAGAGCACACGTGACATGGATCTTACCGTAGACCCAGGAAGACACTGGGCTGCTG-TGGCTTTA--------------TGCATTTGGATAAACTTAGCTGAGTGCCTTTCCCTGTCTGCATGGAGGGTCTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178664812 144 + 195471971 TGTTTTGTGAC---TGTGGG-CACAGTATTC-TAATGTGGGTGCTAATAAAGACC-AGGCAGATCATGAGCTGTGGTAGTCTTTGTCTGTTTTGACCCATCTGTGTGG---TACTTAGCTGAAAGCTTGCCTCTGGCCAGACATGGGGTCAGC i mm10.chr1 I 2 C 0 s canFam3.chr7 36237875 135 + 80974532 AGTGTTTCAG-GAGTCTGGTATGGAGAATATGTGAAGTCAATCTTACCAGACACA-GGCAAGAAA--GAGCCAATTCTTGCTTTATCT-TTCTGACCTATCCATTG-------------TGAGAGCATTTCCCTGGCTGTGTGCAAGGTCTGG i canFam3.chr7 C 0 C 0 a score=344199.000000 s hg38.chr1_KI270759v1_alt 45476 108 + 425601 AAAATGAGCCGGACATTGAGCTGG--GCTTCATACTTTCATCTTTGCCTCTCTCTAGAGCCAAACAAAGGCTT-ACCTGGGTGGGCCCTTTTTGGTCCTGTTTTTCTGTCA s panTro4.chr1 224790271 102 + 228333871 AAAATGAGCCGGACAT-GAGCT------TTCATACTTTGATCTTTGCCTCTCTCTAGAGC-AAACAAAAGCTTTACCTGGGTGGGCC-TTTTTGGTCCTGTTTTTCTGTCA i panTro4.chr1 I 3700 C 0 s ponAbe2.chr1 226150607 108 - 229942017 AAAATGAGCCGGACATTGAGCTGG--GCTTCATACTTTGATCTTTGCCTCTCTCTAGAGCCAAACAAAGGCTT-ACCTGGGTGGGCCCTTTTTGGTCCTGTTTTTCTGTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140040167 107 - 143122389 AAAATGAGCC-GACATTGAACTGG--GCTTCATACTTTGATCTTTGCCTCTCTCTAGAGCCAAACAAAGGCTT-ACCTGGGTGGGCCCTTTTTGGTCCTGTTTTTCTGTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16756261 100 - 229590362 AAAATGAGCCGGACATTGAGCTGG--GCTTGCTACTTTGATCTTTGCCTCTCTCTAGAGCCAAACAAAGGCTT-ACCTGGGTGAGCCCTTTTGGGTC--------CTGTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223518717 100 - 227556264 AAAATGAGCCGGACATTGAGCTGG--GCTTGCTACTTTGATCTTTGCCTCTCTCTAGAGCCAAACAAAGGCTT-ACCTGGGTGAGCCCTTTTGGGTC--------CTGTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16568559 100 - 220367699 AAAATGAGCCGGACATTGAGCTGG--GCTTGCTACTTTGATCTTTGCCTCTCTCTAGAGCCAAACAAAGGCTT-ACCTGGGTGAGCCCTTTTGGGTC--------CTGTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82367876 108 + 85787240 AAAATGAGCCAGACATTGAGCTGG--GCTTGCTACTTTGATCTTTGCCTCTCTCTAGAGCCAAACAAAGGCTT-ACCTGGGTGAGCCCTTTTGGGTCCTGTTTTTCTGTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14041965 108 - 49578535 AAAACGAGCCGGACACGGAGCTGTGCGCTTGACACTTTGATCTTTGCCTTTCTCTGGAGCCAGACAAAGGCTT-ACCTGGGTGG--CCCTTTCGGTCCTGTTTTTCAGTCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178664956 95 + 195471971 AAATGGAGAGGGACATTGTACCAG--GCTTGGCACTTGCATCTTGGCCCTTCAT-------ACTTGAATGCTT-ACTTGGGTGGTCTCTTTGCTGTTCT------ATGTCA i mm10.chr1 C 0 C 0 s canFam3.chr7 36238010 104 + 80974532 ACAAAGAGCTGGATACTGAGCTGG--GCTTGGTACTTTGGTCTTGGCCTTTCTCTGGAGC----CAAAGGCTT-ACCTGGATGGGCCCCCTTTGGTCCTGTTATTCTGTTA i canFam3.chr7 C 0 I 558 a score=245021.000000 s hg38.chr1_KI270759v1_alt 45584 82 + 425601 ------TCGCTGTTGATACGTGGGCCTTGAGCTCC-CTAGTTGCAAACTGGGAAGTGCATTGAATGAGAAGTGTGTGGCTTCTTCCCTG s panTro4.chr1 224790373 82 + 228333871 ------TCACTGTTGATGCGTGGGCCT-GAGCTCNNCTAGTTGCAAACTGGGAAGTGCATTGAATGAGAAGTGTGTGGCTTCTTCCCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226150715 82 - 229942017 ------TCGCTGTTGATACGTGGGCCTTGAGCTCC-CTAGTTGCAAACTGGGAAGTGCATTGAATGAGAAGTGTGTGGCTTCTTCCCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140040274 82 - 143122389 ------TCCTTGTTGATACGTGGGCCTTGAGCTCC-CTAGTTGCAAACTGGGAAGTGCATTGAATGAGAAGTGTGTGGCTTCTTCCCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16756361 82 - 229590362 ------TCCCTGTTGATATGTGGGCCTTGAGCTCC-CTAGTTGCAAACTGTGAAGTGCATTGAATGAGAAGTGTGTGGCTTCTTCCCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223518817 82 - 227556264 ------TCCCTGTTGATATGTGGGCCTTGAGCTCC-CTAGTTGCAAACTGCGAAGTGCATTGAATGAGAAGTGTGTGGCTTCTTCCCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16568659 82 - 220367699 ------TCCCTGTTGATATGTGGGCCTTGAGCTCC-CTAGTTGCAAACTGCGAAGTGCATTGAATGAGAAGTGTGTGGCTTCTTCCCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82367984 82 + 85787240 ------TCCCTGTTGATATGTGGGCCTTGAGCTCC-CTAGTTGCAAACTGCGAAGTGCATTGAATGAGAAGCGTGTAGCTTCTTCCCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14042073 58 - 49578535 ------TCCCTGTTGATACGTGGG-CTTGAGCTCC-----------------------ATTGAATGAGGAGTGCATGACTTC-TCCCTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178665051 42 + 195471971 ------CCTCTTCTGATACGTAGGCCTTGAAC-CA-TTAGCTGCAAGCTG--------------------------------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36238672 84 + 80974532 CTGCTGAGCCTTTTAATAGCTGAGCCTTGAGTTCC-CTAGCTGCAAACTGGTAAGTGCAGTAAATAGGA----CATGGCTTATGCCCTC i canFam3.chr7 I 558 C 0 a score=18810.000000 s hg38.chr1_KI270759v1_alt 45666 27 + 425601 GCTATGCCTTTTCACGTGTTAAACATA s panTro4.chr1 224790455 27 + 228333871 GCTATGCCTTTTCACGTGTTAAACATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226150797 27 - 229942017 GCTATGCCTTTTCCCGTCTTAAACATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140040356 27 - 143122389 GCTATGCCTTTTCACATGTTAAACATA i nomLeu3.chr5 C 0 I 38 s canFam3.chr7 36238756 27 + 80974532 ATTGTTCTTCTTCATGTGTTAAACATG i canFam3.chr7 C 0 C 0 e mm10.chr1 178665093 0 + 195471971 C e calJac3.chr19 14042131 0 - 49578535 C e rheMac3.chr1 16756443 0 - 229590362 C e chlSab2.chr25 82368066 0 + 85787240 C e papAnu2.chr1 16568741 0 - 220367699 C e macFas5.chr1 223518899 0 - 227556264 C a score=7059.000000 s hg38.chr1_KI270759v1_alt 45693 11 + 425601 GGGAAAACTCA s panTro4.chr1 224790482 11 + 228333871 GGGAAAACTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226150824 11 - 229942017 GGGAAAACTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140040421 11 - 143122389 GGGAAAACTCA i nomLeu3.chr5 I 38 C 0 s mm10.chr1 178665093 1 + 195471971 ----------A i mm10.chr1 C 0 C 0 s canFam3.chr7 36238783 11 + 80974532 TGAAGGACTCA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14042131 0 - 49578535 C e rheMac3.chr1 16756443 0 - 229590362 C e chlSab2.chr25 82368066 0 + 85787240 C e papAnu2.chr1 16568741 0 - 220367699 C e macFas5.chr1 223518899 0 - 227556264 C a score=7270.000000 s hg38.chr1_KI270759v1_alt 45704 27 + 425601 GCTATGCCTTTTCATGTCTTAAACAAA s panTro4.chr1 224790493 27 + 228333871 GCTATGCCTTTTCATGTCTTAAACAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226150835 14 - 229942017 GCTATGCCTTTTCA------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140040432 27 - 143122389 ACTATGCCTTTTCATGTGTTAAACATA i nomLeu3.chr5 C 0 T 76 s mm10.chr1 178665094 16 + 195471971 GCCATGCACCATCAGG----------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36238794 0 + 80974532 C e calJac3.chr19 14042131 0 - 49578535 C e rheMac3.chr1 16756443 0 - 229590362 C e chlSab2.chr25 82368066 0 + 85787240 C e papAnu2.chr1 16568741 0 - 220367699 C e macFas5.chr1 223518899 0 - 227556264 C a score=14238.000000 s hg38.chr1_KI270759v1_alt 45731 49 + 425601 GAGAAAACTCAGCTATGCCTTTTCCCGTCTTAAACATAGGGAAAACTCA s panTro4.chr1 224790520 49 + 228333871 GGGAAAACTCAGCTATGCCTTTTCTCGTCTTAAACATAGGGAAAACTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226150849 24 - 229942017 -------------------------CGTCTTAAACATAGGGAAAACTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140040383 49 - 143122389 GGGGAAACTCAGCTATGCCTTTTCCGGTCTTAAACATAGGGAAAACTCA i nomLeu3.chr5 T 76 C 0 s mm10.chr1 178665110 16 + 195471971 -----------------------CCTGGCTTACAT----------CCCA i mm10.chr1 C 0 C 0 e canFam3.chr7 36238794 0 + 80974532 C e calJac3.chr19 14042131 0 - 49578535 C e rheMac3.chr1 16756443 0 - 229590362 C e chlSab2.chr25 82368066 0 + 85787240 C e papAnu2.chr1 16568741 0 - 220367699 C e macFas5.chr1 223518899 0 - 227556264 C a score=104454.000000 s hg38.chr1_KI270759v1_alt 45780 35 + 425601 GCTATGCCTTTTCACGTGTTAAACATAGGGAAAAC s panTro4.chr1 224790569 35 + 228333871 ACTATGCCTTTTCCCGTCTTAAACAAAGGGAAAAC i panTro4.chr1 C 0 I 253 s ponAbe2.chr1 226150873 35 - 229942017 GCTATGCCTTTTCACGTCTTAAACAAAGGGAAAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140040432 35 - 143122389 ACTATGCCTTTTCATGTGTTAAACATAGGGAAAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16756443 35 - 229590362 GCTATGCCTCGTCATGTGTTAAACGTAGGGAAAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223518899 35 - 227556264 GCTGTGCCTCGTCATGTGTTAAACGTAGGGAAAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16568741 35 - 220367699 GCTATGCCTCGTCACGTGTTAAACGTAGGGAAAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82368066 35 + 85787240 GCTATGCCTCGTCACGTGTTAAATGCAGGGAAAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14042131 35 - 49578535 GCTATGCCTTTTCACGAGTTGAACACAGGGAGAAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178665126 35 + 195471971 GCTGTGCTTTTTTGAATATTAAGCACAGGAAAATC i mm10.chr1 C 0 C 0 e canFam3.chr7 36238794 0 + 80974532 C a score=28701.000000 s hg38.chr1_KI270759v1_alt 45815 7 + 425601 TCAGCAT s panTro4.chr1 224790857 7 + 228333871 TCAGCAT i panTro4.chr1 I 253 C 0 s ponAbe2.chr1 226150908 7 - 229942017 TCAGCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140040467 7 - 143122389 TCAGCAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16756478 7 - 229590362 TCAGcat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223518934 7 - 227556264 TCAGCAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16568776 7 - 220367699 TCAGCAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82368101 7 + 85787240 TCAGcat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14042166 7 - 49578535 TCAGCAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178665161 7 + 195471971 TTAGCAT i mm10.chr1 C 0 C 0 e canFam3.chr7 36238794 0 + 80974532 C a score=82172.000000 s hg38.chr1_KI270759v1_alt 45822 26 + 425601 TTG---taataa---catgttatgtttataga s panTro4.chr1 224790864 26 + 228333871 TTG---taataa---catgttatgtttataga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226150915 26 - 229942017 TTG---TAATAA---CATGTTATGTTTATAGA i ponAbe2.chr1 C 0 M 897 s nomLeu3.chr5 140040474 26 - 143122389 TTG---taataa---catgttatgtttataga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16756485 26 - 229590362 ttg---taataa---catgttgtgtttataga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223518941 26 - 227556264 TTG---taataa---catgttgtgtttataga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16568783 26 - 220367699 TTG---TAATAA---CATGTTGTGTTTATAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82368108 26 + 85787240 ttg---taataa---catgttgtgtttataga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14042173 29 - 49578535 TTGtaataataa---caggttcagtttataga i calJac3.chr19 C 0 C 0 s mm10.chr1 178665168 29 + 195471971 CTG---TAAGAATGGCATGCTGTGTTTGCAGG i mm10.chr1 C 0 C 0 s canFam3.chr7 36238794 11 + 80974532 TTG---TAATGA---TA--------------- i canFam3.chr7 C 0 C 0 a score=391310.000000 s hg38.chr1_KI270759v1_alt 45848 152 + 425601 gctcttcacaaagtgctttgatgtctgtgattccatttaatctttacatcagcagcaggggataagtgttatcccagtcttactgatg---aggaaaccaaggctcaagaagattgaatgatttggccaaggctgtgacactag---aaaaggcaaag s panTro4.chr1 224790890 152 + 228333871 gctcttcacaaagtgctttgatgtctgtgattccatttaatctttacatcaacagcaggggataagtgttatcccagtcttactgatg---aggaaaccaaggctcaagaagattgaatgatttggccaaggctgtgatactag---aaaaggcaaag i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140040500 152 - 143122389 gctcttcataaagtgctttgatgtctgtgattccatttaatctttacatcaacagcaagggataagtgttatcccaatctcactgatg---aggaaaccaaggctcaagaagattgaatgatttggccaaggctgtgatactag---aaaaggcaaag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16756511 143 - 229590362 gctcttcacagagtgctttgatgt---------catttaatctttacatcaacagcaggggataagtgttatcctagtcttacggatg---aggaaactaaggctcaagaagactgaatgatttggccaaggctgtcaaactag---aaaaggcaaag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223518967 143 - 227556264 gctcttcacagagtgctttgatgt---------catttaatctttacatcaacagcaggggatacgtgttatcctagtcttacgggtg---aggaaactaaggctcaagaagactgaatgatttggccaaggctgtcaaactag---aaaaggcaaag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16568809 143 - 220367699 GCTCTTCACAGAGTGCTTTGatgt---------catttaatctttacatcaACAGCAGGGGATAAGTGTTATCCTAGTTGTACGGATG---AGGAAACGAAGGCTCAAGAAGACTGAATGATTTGGCCAAGGCTGTCAAACTAG---AAAAGGCAAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82368134 143 + 85787240 gctcttcacaaagtgctttgatgt---------catttaatctttacatcaacagcaggggataagtgttatcctagtcttactgatg---aggaaactaaggctcaagaagattgaatgatttggccaaggctgtcaaactag---aaaaggcaaag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14042202 151 - 49578535 gctcttcacaaggtgcttcgacggctgtgattccatttaatcttgacattgacacca-gggataagtactatccccgtcttgctgatg---aggaaactaaggctcgagaagattgaattatttggccatggctgtgaaactag---aaaaggcaaag i calJac3.chr19 C 0 C 0 s mm10.chr1 178665197 150 + 195471971 GCCCATCATACAGTACTTTTGTGTCTGTGATC-TATTCCATCTTCATGTAAATGCCCAGGGAAGAGGAGTCTACTTGCCTGTTTGATA---AGGAAATTCAGACCTGA-AGAACTGAGTGA---GGCAGATgctgggaaggtagttcagtaggtaaag i mm10.chr1 C 0 I 474 s canFam3.chr7 36238805 139 + 80974532 -------acgaagtgcctttatgtctgtgattccatttaatccttctatcagtagcaaagg-tgagtattatccctgtgttactgatgacaaagtaattaagactcatgaag--------gtttggccaaggctgtgaagctag---gagttgcagag i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226150941 897 - 229942017 M a score=1097673.000000 s hg38.chr1_KI270759v1_alt 46000 431 + 425601 cttggactaaaacccaggtcttcagaattcaggtccagagctctggccaGTCTGTTGACTCCTTCATCAGCTCCCAAGATGAAGATGAGGAGCTATTTTCTGTTTTGAGCCTTTGATTACAGCTTGTTTTGTAATACACCATAAAGGTTGAGACCATGTTtgtttc-tagcacttac-aaaaagacctggcccaattagacacttaataag---tg-ttt--tataaatgaatgaaATTAGTGAGTGAAGAGG--TAAATGAATGGATATATTGAATGAATAGATTAACTAGGCAAAAACCTACCTGTCTGCATTTATATTGGAAAGCACTACATGAAAAAATGAGATTTGAAAGTTTTAGAATGTGGCTGTGTGTGTGAGAGAGATCGTCCCTCAATCTTTCATTTCTTCTGATTGTCTATCAGTAGGGAAGGTCCAAGT s panTro4.chr1 224791042 431 + 228333871 cttggactaaaacccaggtgttcagaattcaggtccagagctctggccaGTCTGTTGACTCCTTCATCAGCTCCCAAGATGAAGATGAGGAGCTATTTTCTGTTTTGAGCCTTTGATTACAGCTTGTTTTGTAATACACCATAAAGGTTGAGACCAtgcttgttac-tagcacttac-aaaaggacctagcccaattagacacttaataag---tg-ttt--tataaatgagtgaaATTAGTGAGTGAAGAGG--TGAATGAATGGATATATCGAATGAATAGATTAACTAGGCAAAAACCTACCTGTCTGCATTTATATTGGAAAGCACTACATGAAAAAATGAGATTTGAAAGTTTTAGAATGTGGCTGTGTGTGTGAGAGAGATCGTCCCTCAATCTTTCATTTCTTCTGATTGTCTGTCAGTAGGGAAGGTCCAAGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140040652 430 - 143122389 cttggactaaaacccgggtcttcagaattcaggtccagagctctggccaGTCTGTTGACTCCTGCATCAGCTCCCCAGATGAAGACGAGGAGCTGTTTTCTGTTTTGAGCCTTTGATGATAGCTTGTTTTGTAATACGCCATCACGGTTGAGACCATGTTtgtttc-tagcacttac-aaaaggacctggcccaattagacacttaataag---tg-ttt--tataaatgaatgaaATTAGTGAGTGAAGAGG---GAATGAATGGATATATTGAATGAATAGATTAACTAGGCAAAAACCTACCTGTCTTCATTTATATTGGAAAGCACTACGTGAAAGAATGAGATTTGAAAGTTTTAGAATGTGGCTGTGTGTGTGAGAGAGATCGTCCCTAAATCTTTCATTTCTTCTCATTGCCTATCAATAGGGAAGGTCCAAGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16756654 421 - 229590362 cttggactgaaacccaggtcttcagaattcaggtccagagctctggccaGTCTGTTGACTCCTTTGTCAGCTCCCCAGATGAAGATGAGGAGCTGTTTTCTGTTTTGAGACTTTGATTATAGCTTGTTTtgtaatacgccgtgaaggttcagaccatgcttgtttt-tagcacctac-aaaaggacctggcccaattagacacctaataag---tgtttt--tataaatgcatgaaATTAGTGAGTGAAGAGG--TGAATGAATGGATATATTGAATGAATAGATTAACTAGGCAAAAACTTACCTGTCTGCATTTGTATTG----------CATGAAAAAATGAGATTT-AAAGTTTTAGAATGTGACTGTGTGTATGGGAGAGATCTTCCCTAAATCTTTCATTTCTTCTGATTGTCTATCAATAGGGAAGGTCCAAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223519110 420 - 227556264 cttggactgaaacccaggtcttcagaattcaggtccagagctctggccagtctgttgactcctttgtcagCTCCCCAGATGAAGATGAGGAGCTGTTTTCTGTTTTGAGACTTTGATTATAGCTTGTTTTGTAATACGCCGTGAAGGTTCAGACCAtgcttgtttt-tagcacctac-aaaaggacctggcccaattagacacctaataag---tg-ttt--tataaatgcatgaaATTAGTGAGTGAAGAGG--TGAATGAATGGATATATTGAATGAATAGATTAACTAGGCAAAAACTTACCTGTCTGCATTTGTATTG----------CATGAAAAAATGAGATTT-AAAGTTTTAGAATGTGACTGTGTGTATGGGAGAGATCTTCCCTAAATCTTTCATTTCTTCTGATTGTCTATCAATAGGGAAGGTCCAAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16568952 420 - 220367699 CTTGGACTGAAACCCAGGTCTTCAGAATTCAGGGCCAGAGCTCTGGCCAGTCTGTTGACTCCTTTGTCAGCTCCCCAGACGAAGATGAGGagctgttttctgttttgagactttGATTATAGCTTGTTTTGTAATACGCCGTGAAGGTTCAGACCATGTTTGTGTT-TAGCACCTAC-AAAAGGACCTGGCCCAATTAGACACCTAATAAG---TG-TTT--TATAAATGCATGAAATTAGTGAGTGAAgagg--tgaatgaatggatatatTGAATGAATAGATTAACTAGGCAAAAACTTACCTGTCTGCATTTGTATTG----------CAtgaaaaaatgagattt-aaagTTTTAGAATGTGACTGTGTGTATGGGAGAGATCTTCCCTAAATCTTTCACTTCTTCTGATTGTCTATCAATAGGGAAGGTCCAAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82368277 420 + 85787240 cttggactgaaacccaggtcttcagaattcaggtccagagctctggccagtctgttgactcctttgtcagCTCCCCAGACGAAGATGAGGAGCTGTTTTCTGTTTTGAGACTTTGATTATAGCTTGTTTTGTAATACGCCGTGAAGGTTCAGACCATGTTtgtttc-tagcacctac-aaaaggacctggcccaattagacagttaataag---tg-ttt--tataaatgcatgaaATTAGTGAGTGAAGAGG--TGAATGAATGGATATATTGAATGAATAGATTAACTAGGCAAAAACTTACCTGTCTGCATTTGTATTG----------CATGAAAAAATGAGATTT-AAAGTTTTGGAATGTGACTGTGTGTATGGGAGAGATCTTCCCTAAATCTTTCATTTCTTCTGATTGTCTATCAATAGGGAAAGTCCAAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14042353 407 - 49578535 cttggcctaaaacccaggtcttcggaattcaggtccag--------------tcttgattccTCCGTCAGCTCC--GGGTGATGACAAGAGACTGTTTTCTGTTTGGAGCCTTGGATGAGAGCTCGTTTTATAATACGCCACAAagggtgggaccatgtttgtttc-tggcacctacaaaaaggacctggcacaattagacacttaataag---tg-ttt--tataaatgaatgaaATT----AGTGAAGAGG--TGAATGAGTGGATATATTGAATGAATAGAT----TAGGCAAAAACCTGCCTGTTAGTGTTTGTGTTGGAAAGCACTACATGAAAAAATCGTTTTTGAAAGTTTTCGAATGTGGGTATGTGTGTGGGAGAGATGTGCCCTGAATCTTTCATTTCTTCTCGTAGTCTATCGGTA-GGAAGGTCCAAGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178665821 398 + 195471971 cttaaactaaaacctaggtgttcagaatg-aagtccagagcta-------------------tttactgagtccccacaTGCAGAGGGCAGACTGCTTTCTCTCTGGAATCTTTAATTGTAGTGTGTTTTGTAATAT-CCATAAACTTTAGAACTGCGTTAGCTTTGTGACATGGAC-CAAAGGAAT--GCACAAGTCGACACTAAACAAG---CG-------AGGAATGACCGACGCTGTTGAATGAAGAGGTGTGAGTGAACGTGCAAGATGAATGACTAGAG-AACTCGACAAAGCTTTACTTGCC----CTCATATTGGAAAGCTCTGCACTGTAAAATGCTACTGTACAGTTTAGGACTGTGACCACGTGCA----GCATGTCACACCTAAGCTTTTCCTCTCTTCTGATAGATGGTGAATGTGAACAGACGGAGT i mm10.chr1 I 474 C 0 s canFam3.chr7 36238944 413 + 80974532 cttggaccttcactcagatattcccagttcaagtccagagctctgtttaTCCAGTGAACTCCTTCATCAGCTCCCCAGATGAGGAGGAAGTGCCGTGTTCTGTTTGGAATTTTTGATTACAATGTGCTTTGTAATATTCCAT-AAGGTTGGGACCATGTTTATATT-CCGACTTTAG-CAAAGAACCTGGCCT-ATTAGGTACCTATTAGGCCCTA-TTTGGTACCAATAAATTGTACCAATAACTGA-------TAAATGAATGAAATTAGTGAATGAATAGATAAATTGGGCAGAAATCTACGTGTCTGCATTTGTACTGGAAAGCACTACCTG---------------TTAGGTGTAAAATGTGGCCATGTATATGCAGGGGAT-ATGCCTGAATTGTTCATTTCTTCTAGCTCTCTAGCAGCATTGAGGGACTGAGT i canFam3.chr7 C 0 I 186 e ponAbe2.chr1 226150941 897 - 229942017 M a score=227042.000000 s hg38.chr1_KI270759v1_alt 46431 88 + 425601 CCCA------CCCATA-CTGTGTTTCTCAAATA-TTCTCAAATTGTATTG--AAACCTGTAACCAAAA-CCAAAGTTAAAATTGATTTTAAAGTGTCTT s panTro4.chr1 224791473 88 + 228333871 CCCA------CCCATA-CCGTGTTTCTCAAATA-TTCTCAAATTGTATTG--AAACCTGTAACCAAAA-CCAAAGTTAAAGTTGATTTTAAAGTGTCTT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140041082 88 - 143122389 CCCA------CCCATA-CCATGTTTCTCAAATA-TTCTCAAATTGTATTG--AAACCTGTAACCAAAA-CCCAAATTAAAATTGATTTTAAATTGTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16757075 89 - 229590362 CCCG------TCCATAGTCATGTTTCTCAAATA-TTCTCAAATTGTGTTG--AAACCTGTAACCAAAA-CCAAAATTAAAATTGATTTTACAGTGTCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223519530 89 - 227556264 CCCG------TCCATAGTCGTGTTTCTCAAATA-TTCTCAAATTGTGTTG--AAACCTGTAACCAAAA-CCAAAATTAAAATTGATTTTACAGTGTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16569372 89 - 220367699 CCCG------TCCATAGTCGTGTTTCTCAAATA-TTCTCAAATTGTGTTG--AAACCTgtaaccaaaa-ccaaaattaaaattgattttacaGTGTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82368697 89 + 85787240 CCCG------TCCATAGTCATGTTTCTCAAATA-TTCTCAAATTGTGTTG--AAACCTGTAACCAAAA-CCAAAATTAAAATTGATTTTACAGTGTCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14042760 87 - 49578535 CCCA------TCCATA-CTGTGTTTCTCAAATA-TTCTCAAATTGTACTG--AAACCTGTAACCAAAA-TCAAAATTAAAATTGA-TTTAAAATGTTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178666219 71 + 195471971 CAGG------GTCACA----------------------CCAAGGGTGTTGATAAATCCACAAGCAAAAGTCAAAATCAAGACCTATTTAAGAAGGTCTT i mm10.chr1 C 0 I 210 s canFam3.chr7 36239543 95 + 80974532 cccagggatcccCACA-CCATGTTTCTTAAAAAGTGCTCAAATTTTATTG--GAATCTGCAACCAAAA-TCAGAATTAAAATCTATTTTTAAATATGTC i canFam3.chr7 I 186 C 0 e ponAbe2.chr1 226150941 897 - 229942017 M a score=413784.000000 s hg38.chr1_KI270759v1_alt 46519 213 + 425601 CTAGGTTTTTATTCTACCATTCCTACCTCCAGTtttttgtttgtttgtttgtttgt----gttcctttttgagacagagtctcattccttcactcaga--ctggaggg--caatggtgcgatctcagctcactgcaacctccgcctcccaggctcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacccaccaccacacctggct s panTro4.chr1 224791561 217 + 228333871 CTAGGTTTTTATTCTACCATTCCTACCTCCAgttttttgtttgtttgtttgtttgtttgtGTTCCtttttgagacagagtctcattccatcactcaga--ctggaggg--caatggtgcgatctcagctcactgcaacctctgcctcccaggctcaagaaattctcctgcctcagcctcctgagtagctgggattacaggcacccgccaccacacctggct i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140041170 212 - 143122389 CTAGGTTCTTATTCTACCATTCCTACCTCCAG-TTTTCGtttgtttgtttgtttgt----gttcctttttgagacagagtctcattccatcactcaga--ctggaggg--caatggtgcgatctcagctcactgcaacgtccgcctcccaggctcgagcaattctcctgcctcagcctcctgagtagctgggattacaggcacccgccaccacacctggct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16757164 203 - 229590362 CTGGGTT-TTATTCTGCAATTCCTACCTCCAGtt---------tttgtttgtttgt----tttcctttttgagacagagtctcatttcatcactcaga--ctggaggg--cagtggcatgatctcagctcactgcagcctccgcctcccaggctcaagcaattctcctgcctcagcctcctgactagctgggattacaggtgccctccaccaagcctggct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223519619 203 - 227556264 CTGGGTT-TTATTCTGCAATTCCTACCTCCAGtt---------tttgtttgtttgt----tttcctttttgagacagagtctcattccatcactcaga--ctggaggg--cagtggcatgatctcagctcactgcaacctccgcctcccaggctcaagcaattctcctgcctcagcctcctgactagctgggattacaggtgccctccaccaagcctggct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16569461 203 - 220367699 CTGGGTT-TCATTCTGCAGTTCCTACCtccagtg---------tttgtttgtttgt----tttcctttttgagacagagtctcattccatcactcaga--ctggaggg--cagtggcatgatctcagctcactgcaacctccgcctcccaggctcaagcaattctcctgccacagcctcctgactagctgggattacaggtgccctccaccaagcctggct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82368786 200 + 85787240 CTGGGTTCTTATTCTGCAATTCCTACCTCCAGtt-------------tttgtttgt----tttcctttttgagacagagtctcattccatcactcaga--ctggaggg--cagtggcatgatctcagctcactgcaacctccgcctcccaggctcaagcaattctcctgcctcagcctcctgactagctgggattacaggtgccctccaccaagcctggct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14042847 208 - 49578535 CTGTGTTCTTATTCTCCCATTCCTACCTCCAATAtt-------tttgtttatttgt----tttcttttttgagacgaagtctcattccatccctcagaccccagagtg--cagtggtgcaatcttagctcactgcaacctccgcctcctgggctaaagcaattctcctgcctcagctgcctgagtagctgggactacagtcatgcaccaccatgtccggct i calJac3.chr19 C 0 C 0 s canFam3.chr7 36239638 94 + 80974532 ----------------------------------------------------------------CTCTGTggggcac-----------------------ctgggtggctcagtgg----------------ttaagcatctgccttc--agctcaag-------------tcatgatcctggggtcctgggattaaa---------tcccacatcaggct i canFam3.chr7 C 0 I 121 e mm10.chr1 178666290 210 + 195471971 I e ponAbe2.chr1 226150941 897 - 229942017 M a score=318006.000000 s hg38.chr1_KI270759v1_alt 46732 139 + 425601 aatttttgtattttcagtagagatgggttttcacaatgttggccaggttggtctcaaactcctaactgaaagtaatccatcaaccttggcctcgccaagtgctgagatt----ataggcgtgaaccactgtgcctggccCACC s panTro4.chr1 224791778 139 + 228333871 aatttttgtattttcagtagagatgggttttcacaatgttggccaggttggtctcaaactcctaactgaaagtaatccatcaaccttggcctcgcaaagtgctgagatt----ataggcatgaaccactgtgcctggccCACC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140041382 139 - 143122389 aatttttgtattttcagtagagataggttttcacaatgttggccaggttggtctcaaactcctaaccgaaagtaatccaccaatcttggcctccccaagtgctgggatt----ataggcatgagccaccgtgcctggccCACC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16757367 139 - 229590362 aatttttgtgttttcagtagaaatgggttttcataatgttggccaagttggtctcgaactcctaactggcaataatccaccaaccttggcctcccaaagtgctgggatt----ctaggcatgagccactgtgcctggccCACC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223519822 139 - 227556264 aatttttgtattttcagtagaaatgggttttcataatgttggccaggttggtctcgaactcctaactggaaataatccaccaaccttggcctcccaaagtgctgggatt----ctaggtatgagccactgtgcctggccCACC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16569664 139 - 220367699 aatgtttgtattttcagtagaaatgggttttcataatgttggccaggttggtcttgaactcctaactggAAAtaatccaccaaccttggcctcccaaagtgctgggatt----ctaggcatgagccactgtgcctggcccacc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82368986 139 + 85787240 aatttttgtattttcagtagaaatgggttttcataatgttggccaggttggtctcgaactcctaactggaaataatccaccaaccttggcctcccaaagtgctgggatt----ctaggcatgagccactgtgcctggccCACC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14043055 143 - 49578535 aattttttaatttttagtagagataggttttcacaatgttggccaggttggtctcgagctcctaacctgaagtgattcaccaaccttggcttcccaaagcgctgggattgttgattggcatgagccactgtgactggcTCACC i calJac3.chr19 C 0 C 0 e mm10.chr1 178666290 210 + 195471971 I e canFam3.chr7 36239732 121 + 80974532 I e ponAbe2.chr1 226150941 897 - 229942017 M a score=63632.000000 s hg38.chr1_KI270759v1_alt 46871 26 + 425601 TACTTCCAGTTTAAAGTCACCTGGGA s panTro4.chr1 224791917 26 + 228333871 TACTTCCAGTTTAAAGTCACCTGGGA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140041521 26 - 143122389 CACTTCCAGTTTAAAGTCACCTGGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16757506 26 - 229590362 TACTTCGAGTTTCAAGTCATCAGGGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223519961 26 - 227556264 TACTTCGAGTTTCAAGTCATCAGGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16569803 26 - 220367699 taCTTCGAGTTTCAAGTCACCAGGGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82369125 26 + 85787240 TACTTCGAGTTTCAAGTCACCAGGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14043198 26 - 49578535 TACTTCCAGTTTAAAGACACCTAGGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36239853 26 + 80974532 TACTTCTGCTGTCAAGTTACCTAGGA i canFam3.chr7 I 121 C 0 e mm10.chr1 178666290 210 + 195471971 I e ponAbe2.chr1 226150941 897 - 229942017 M a score=1716921.000000 s hg38.chr1_KI270759v1_alt 46897 617 + 425601 AATACTTGGAGTACAGTTTTGTCATTTTAATCCTTTTTTGGACCACAACAAT-CACTTTACGAACATTTTT----TTAACTTTTTCAGAATCGATTCAAGGAAAAGTGATAGAGGCAGGTGGGGACGGGGAGGTGAGTTTTCTTCGCATTTTTGGGAATCTCAACTCCTGAGCCTGTCTTACTAG------TACGGGTTCCCCAACCCCACGACTAGAACTATCTTAGTGGTTTCTTCCTAAAGAGATGTAC-------------------------------------------------------------------------ACgtgtgtgtgtgtgtgtgtgtggtgggcgtgggtg-----------------ggtgtgtAGAGTAGGGAAAAGGTGAGAAGTGGCTCTCTTGCT------------------ATAGAC-----TTTTGCTTTTTACTCTTTTCCACTGAGTCTGCTCATATTATTCATACGATTATCACGTTAGAGGTTTTGGAGTTGTAGTGGCTATCGTTTTAAGTTTCTTGTAGAATTAATTTATATAAGTAGACAATGTATATGAATTGATTGATTCAAATCTGTATCTTACAGGATCTGTTAAAGATAGTCAGAAGGCTGTCTTTTAAAATGTGAGGACAAAT---CAGTTTAACAGTATAGC-AGAGAAGTACAGCTGTGCTCTGTCAAACTCTAGGCTCCTGTGTGTTGGAATGACTAGAGG s panTro4.chr1 224791943 617 + 228333871 AATACTTGGAGTACAGTTTTGTCATTTTAATCCTTTTTTGGACCACAACAAT-CACTTTATGAACATTTTT----TTAACTTTTTCGGAATCAATTCAAGGAAAAGTGATAGAGGCAGGTGGGGACAGGGAAGTGAGTTTTCTTCGCATTTTTGGGAATCTCAACTCCTGAGCCTGTCTTACTAG------TATGGGTTCCCCAACCCCATGACTAGAACTATCTTAGTGGTTTCTTCCTAAAGAGACGTAC-------------------------------------------------------------------------ACgtgtgtgtgtgtgtgtgtgtggtgggcgtgggtg-----------------ggtgtgtAGAGTAGGGAGAAGGTGAGAAGTGGCTCTCTTGCT------------------ATAGAC-----TTTTGCTTTTTACTCTTTTCCACTGAGTCTGCTCATATTCTTCATACGATTATCACGTTAGAGGTTTTGGAGTTGTAGTGGCTATCGTTTTAAGTTTCTTGTAGAATTAATTTACATAAGTAGACAATGTACATGAATTGATTGATTCAAATCTGTATCTTATAGGGTCTGTTAAAGATAGTCAGAAGGCTGTCTTTTAAAATGTGAGGACAAAT---CAGTTTAACAGTATAGC-AGAGAAGTACAGCTGTGCTCTGTCAAATTCTAGGCTCCTGTGTGTTGGAATGACTAGAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226151838 620 - 229942017 AATACTTGGAGTACAGTTTTGTCATTTTAATCCTTTTTTGGACCACACCAATACACTTTATGAAC-TTTTT----TTAACTTTTTCGGAATCGATTCTAGGAAAAGTGATAGAGGCAGGTGGGGACAGGGAGGTGAGTTTTCTTCGCATTTTTGGGAATCTCAACTCCTGAGCCTGTCTTACTAG------TATGGGTTCCCCAACCCCACGACTAGAGCTATCTTAGTGGTTTCTTCCTAAAGAGACGTAC---------------------------------------------------------gt--------------gtgtgtgtgtgtgtgtgtgtgtggtgggcgtgggtg-----------------ggtgtgtAAAGTAGGGAAAAGGTGAGAAGTGGCTCTCTTGCT------------------ATAGAC-----TTTTGCTTTTTACTCTTTTCCACTGAGTCTGCTCATATTCTTCATACGATTATCACATTAGAGGTTTTGGAGTTGTAGTGGCTATCGTTTTAAGTTTCTTGTAGAATTAATTTACATAAGTAGACAATGTACATGAATTGATTGATTCAAATCTGTATCTTACAGCGTCTGTTAAAGATAGTCAGAAGGCTGTCTTTTAAAATGTGAGGACAAAT---CAGTTTAACAGTATAGCAAGAGAAGTACAGCTGTGCTCTGTCAAATTCTAGGCTCCTGTGTGTTGGAATGACTAGAGG i ponAbe2.chr1 M 897 C 0 s nomLeu3.chr5 140041547 643 - 143122389 AATACTTGGAGTACAGTTTTGTCATTTTAATCATTTTTTGGACCACAACAAT-CACTTTATGAACATTTTT----TAAGCTTTTTTGGAATCGATTCAAGGAAAAGTGATAGAGGCAGGTGGGGACAGGGAGGTGAGTTTTCTTCGCATTTTTGGGAAGCTCAACTCCTGAGCCTGTCTTACTAG------TATGGGTTCCCCAACCCCACGACTAGAGCTATCTTAGTGGTTTCTTCCTAAAGAGATGTAC-----------------------ACgtgtgtgtgtgtgt----------gtgtgtgtgt--------------gtgtgtgtgtgtgtgtgtgtgtAGTGGGCATGGGTG-----------------GGTGTGTAGAGTAGGGAAAAGGTGAGAAGTGGTTCTCTTGCT------------------ACAGAC-----TTTTGCATTTTACTCTTTTCCACTGAGTCTGCTCATATTCTTCACAAGATTATCACATTAGAGGTTTTAGAGTTGTAGTGGCCATCGTTTTAAGTTTCTTTTAGAATTAATTTACATAAGTAGACAATGTACATGAATTGATTGATTCAAATCTGTATCTTATAGGGTCTGTTAAAGATAGTCAGAAGGCTGCCTTTTAAAATGTGAGGACAAAT---CAGTTTAACAGTATAGC-AGAGAAGTACAGCTGTGCTCTGTCAAATTCTAGGCTCCTGTGTGTTGGAATGACTAGAGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16757532 629 - 229590362 AATACTTGGAGCACAGTTTTGTCATTTTAATCCTTTTGTGGAGCACAACCAT-CACTTTACGAACATTTCTATAGCTAACTTTTTTGGAATCGATTCAAGGAAAAGTGATAGAGGCAGGTGGGGCGAGGGAGGTGAGTTCTCTTCGCAGTTTTGGGAATTCCAACTCCTGAGCCTGTCTTCCTAGCCCCACGCTGGTTTCCCCAGCCCCACGACGAGGGCTACCTTAGTGGTTTCTTCCCACAGAGACGTAC-----------------------------------------------------------------------------gtgtgcgtgtgtgtgtgt-----------gtg-----------------agtgtgGAGAGTGGGAAAAAGGTGAGAAGTAGCTTTCTTGCTACTCTGAATGC---ATTCATAGACTT---TTTTGCTTTTTACTCTTTTCCACTGAGTTTGCTCATATTCTTCATAAGATTATCACATTAGAGGTTTTGGAGTTGTAGTGGCTGTTGTTTTAAGTTTCTTGTAGAATTAATTTACATAAGTAGACAATGTACATGAATTGATTGATTCAAATCTGTGTCTTATAGGGTCAGTTAAAGATAGTCAGAAGGCTGTCTTTTAAAATGTGAGGACAAAT---CAGTTTAACAGTATAGC-AGAGAAGTACTGCTGTGCTCTGTCAAATTCTAGGCTCCTGTGTGTTGGAATGACTAGAGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223519987 631 - 227556264 AATACTTGGAGCACAGTTTTGTCATTTTAATCCTTTTGTGGACCACAACCAT-CACTTTATGAACATTTCTATAGCTAACTTTTTCAGAATCGATTCAAGGAAAAGTGATAGAGGCAGGTGGGGCGAGGGAGGTGAGTTCTCTTCGCAGTTTTGGGAATTCCAACTCCTGAGCCTGTCTTCCTAGCCCCACGCTGGTTTCCCCAGCCCCACGACGAGGGCTACCTTAGTGGTTTCTTCCCACAGAGATGTAC---------------------------------------------------------------------------gtgtgtgtgtgtgtgtgtgt-----------gtg-----------------agtgtgtAGAGTGGGAAAAAGGTGAGAAGTAGCTTTCTTGCTACTCTGAATGC---ATTCATAGACTT---TTTTGCTTTTTACTCTTTTCCACTGAGTTTGCTCATATTCTTCATAAGATTATCACATTAGAGGTTTTGGAGTTGTAGTGGCTGTTGTTTTAAGTTTCTTGTAGAATTAATTTACATAAGTAGACAATGTACATGAATTGATTGATTCAAATCTGTGTCTTATAGGGTCTGTTAAAGATAGTCAGAAGGCTGTCTTTTAAAATGTGAGGACAAAT---CAGTTTAACAGTATAGC-AGAGAAGTACTGCTGTGCTCTGTCAAATTCTAGGCTCCTGTGTGTTGGAATGACTAGAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16569829 634 - 220367699 AATACTTGGAGCacagttttgtcattttaatCCTTTTGTGGACCACAACCAT-CACTTTATGAATATTTCTATAGCTAACTTTTTCAGAATCGATTCAAGGAAAAGTGATAGAGGCAGGTGGGGTGAGGGAGGTGAGTTTTCTTTGCAGTTTTGGGAATTCCAACTCCTGAGCCTGTCTTCCTAGCCCCACGCTGGTTTCCCCAGCCCCACGACGAGGGCTATCTTAGTGGTTTCTTCCCACAGAgacgtac---------------------------------------------------------gt--------------gtgtgtgtgtgtgtgtgtgtgt-----------gtg-----------------agtgtgtagaGTGGGGAAAAGGTGAGAAGTAGCTTTCTTGCTACTCTGAATGC---ATTCATagactt---ttttgctttttactc-tTTCCACTGAGTTTGCTCATATTCTTCATAAGATTATCACATTAGAGGTTTTGGAGTTGTAGTGGCTGttgttttaagtttcttgtagaatTAATTTACATAAGTGGACAAGGTACATGAATTGATTGATTCAAATCTGTGTCTTATAGGGTCTGTTAAAGATAGCCAGAAGgctgtcttttaaaatgtgaggacaaAT---CAGTTTAACAGTATAGC-AGAGAAGTACTGCTGTGCTCTGTCAAATTCTAGGCTTCTGTGTGTTGGAATGACTAGAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82369151 637 + 85787240 AATACTTGGAGCACAGTTTTGTCATTTTAATCCTTTTGTGGACCACAACCAT-CACTTTATGAACATTTCTATAGCTAACTTTTTCGGAATCGATTCAAGGAAAAGTGATAGAGGCAGGTGGGGCGAGGGAGGTGAGTTTTCTTCGCAGTTTTGGGAATCCCAACTCCTGAGCCTGTCTTCCTAG-----CATGGGTTTCCCCAGCCCCATGATGAGGGCTACCTTAGTGGTTTCTTCCCATAGAGACGTAC-------------------------------------------------gtgtgtgtgt--------------gtgtgtgtgtgtgtgtgtgtgt-----------gtg-----------------tgtgtgtAGAGTGGGGAAAAGGTGAGAAGCAGCTTTCTTGCTACTCTGAATGC---ATTCATAGACTT---TTTTGCTTTTTACTCTTTTCCACTGAATCTGCTCATATTCTTCGTAAGATTATCACATTAGAGGTTTTGGAGTTGTAGTGGCTGTTGTTTTAAGTTTCTTGTAAAATTAATTTACATAAGTAGACAACGTACATGAATTGATTGATTCAAATCTATGTCTTATAGGGTCTGTTAAAGATAGTCAGAAGGCTGTCTTTTAAAATGTGAGGACAAAT---CAGTTTAACAGTATAGC-AGAGAAGTACTGCTGTGCTCTGTCAAATTCTAGGCTCCTGTGTGTTGGAA-GACTAGAGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14043224 624 - 49578535 AATAGTTGGAGCACAGTTTTGTCGTTTTAATCCTTTGCTGGACCAAAAAAGT-CACTTTATGAACATTTCTATATTTAACTTTTTCAGAGTCGATTCAAGGAACACTCATAGAGGCGGGTGGGGAGAGG--AGACAGTATTCTTCCCAGTTCTGGGAATCTCAGTTCCGGAGCCCGTCTTCCTGG----------CTTTCCCCAACCCCACGGCCAGGGCTGTCTTAGTGGTTTCTTCCCAAAGAGACATAC---------------------------------------------------------gt--------------gtgtgtgtgtttgagtgtgtgt-----------gtg-----------------agtatgtgtgtgtgtgtgtgtgtgtgAAATGGCTCTCTTGCTACTCTGAATGC---ATTCATAAACTTTGCTTTTGCTTTTTACTCTTTTCCACCGAGTCTGCTCATATTCTTCACAAGATTATCACATGGGAGGTTTTGGTGGTGTAGCTGCTATTGTTTTAAGTTTCCCGTGGAATTAACTTACATAAGTAGGCAGTGTACGAGAATCCATTGATTCAGATCTGTGTCTTACAGAGTCGGTTAAAGATGGTCAG-AGCCTGTCTTTTAAAATGTGAGGCTAAAT---CAGTTTAACAGTATGGC-AGAGAAGTACAGCTGTGCTCCGT-GAATTCTGGGCTCCTGTGTGTTGGAATGACCAGAGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36239879 635 + 80974532 CATGCGTGG-GCCCAGTTTCA-CAGTCTTATCCCCTGCTAGAGCATGCGCAT-CACTGAGTGCATGTACCT----GTAAC---TCCAGAGCCGATC---------------------------ATGAGGGAGCTGA--------------------AATCTCACCTCC--AGTCTGTCTTGTCTG------TACTGCTTGCC-------------ACATTTGTGTCATTTGTTTCTTCCAGGAGAGGTGTACTTGTtgtgagtgtgcatgtggtgaggtgtgtatttgtgtagtgtatgtggtgtgtgtgtttgtgtatggtgtggtgtgtgagtgtgtaagtgtgtggtgtgggggggtgtgctgtgtgtgCGGTGCAGTGTGTGGTGTGGGGAGAGTGGGGAGCAGGGCCCCCCTGCTACCTTGAGTGCTGTCCTCAT---------GTCTGCTCCACACTC--TTCCCCTGAGGCTGCTTGTGTTTTTGGGGTGAACACC----TAGAGGTCTGG-----GTGGTGGAGGCAGTGTCAGG--TCTTGGACCCCTGGCCTGTGT-GGTAGACAATGTACATGAACTGACTGACCCAAGTCTGTCCCTTATGGGGCTCACTAA------TCAAAAAGCTGTTTTTGAAACTGCAAAGATGAGTGGGCACCGTCATGGGGGAGC-AGGCAGGGGCAGCCGTGCT--GTCCAAGTCTGGGCTGCCCAGCGCTGGCCCGGCTAACGG i canFam3.chr7 C 0 C 0 e mm10.chr1 178666290 210 + 195471971 I a score=379564.000000 s hg38.chr1_KI270759v1_alt 47514 141 + 425601 CAGCAGGGAGAGGGGTCCTGGTTTACTCACCCCCTCTCCCTCTTTCACATACTAGCTTGGGCTTGTTGTGGTTGAGGTGGTGTGGGAACATCTAGAAGGTTCATTCAAAAAAGACAGCCTCAGCCTTTGCTCAGACGCTCA s panTro4.chr1 224792560 141 + 228333871 CAGCAGGGAGAGGGGTCCTGGTTTACTCACCCCCTCTCCCTCTTTCACATACTAGCTTGGGCTTGTTGTGGTTGAGGTGGTGTGGGAACATCTAGAAGGTTCATTCAAAAAAGACAGCCTCAGCCTTTGCTCAGACGCTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226152458 141 - 229942017 CAGCGGGGAGAGGGGTCCTGGTTTACTCACCCCCTCTCCCTCTTTCACATACTAGCTTGGGCTTGTTGTGGTTGAGGTGGTGTGGGAACATCTAGAAGGTTCATTCAAAAAAGACAGCCTCAGCCTTTGCTCAGATGCTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140042190 141 - 143122389 CAGTGGGGAGAGGGGTCCTGGTTTACTCACCCCCTCTCCCTCTTTCACATACTAACTTGGGCTTGTTGTGGTTGAGGTGGTGTAGGAACATCTAGAAGGATCATTCAAAAAAGACAGCCTCAGCCTTTGCTCAGATGCTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16758161 134 - 229590362 CAGCAGGGAGAGGGGTCCGGGTTTACTCACCCTCTCTCCCTCTTTCACATACTAACTTGGGC---TTGTGTTTGAGGTGATGCAGGAACACCTAGAAGCATCATTCACA----ACAGCCTCAGCCTTTGCTCAGATGCTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223520618 134 - 227556264 CAGCAGGGAGAGGGGTCCGGGTTTACTCACCCTCTCTCCCTCTTTCACATACTAACTTGGGC---TTGTGTTTGAGGTGATGCAGGAACACCTAGAAGCATCATTCAAA----ACAGCCTCAGCCTTTGCTCAGATGCTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16570463 133 - 220367699 CAGCAGGGAGAGGGGTCC-GGTTTACtcaccctctctccctctttcacaTACTAACTTGGGC---TTGTGGTTGAGGTGATGCAGGAACATCTAGAAGCATCATTCAAA----ACAGCCTCAGCCTTTACTCAGATGCTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82369788 138 + 85787240 CAGCAGGGAGAGGGGTCCGGGTTTACTCACCCTCTCTCCCTCTTTCACATACTAACTTGGGC---TTGTGGTTGAGGTGATGCAGGAACATCTAGAAGCATCATTCAAAACAGACAGCCTCAGCCTTTGCTCAGATGCTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14043848 132 - 49578535 CAGCAGGCAGAGGGGTTCT-GTTTACTCACGTCCTCTGCCTCTTTCACGTTTTAACTCAGGC---TTGTGGTTGAGGTGGTGTAGAAACCTCTGGAAGGATC-TTTAAA----ACAGCCTCAGCCTTTGCTCAGATGCTCA i calJac3.chr19 C 0 C 0 e mm10.chr1 178666290 210 + 195471971 I e canFam3.chr7 36240514 0 + 80974532 C a score=1158669.000000 s hg38.chr1_KI270759v1_alt 47655 417 + 425601 AGATGTTCTGCCGGCTCTCCCTACCATGAAAGTTCTCTGAGAAGCCAGT--AAAGATGGCAGCCTCTAAAGAGGTTAGCTTTATTTGGTGGAGGGGCGGTAGGGGTGGCACACACCGAGGAAGAT-TCGGATCGTGGCACATCCTTGTGGTCAGGCCCAGAAATCCTCATTGCCCTGCAGCCACCCAGGTCATGATTCATGAGGTGGGGG--TCTAAGCTGAGAATGGCTGGCCGGTTCTCTGACTTCGTGGGTGTGTAATAGTTGGTTGCAACTGACTTCTCAAGAATGACAGTTACTGACTGGAGCTGGCAGAGAGGTGTGGCCAAGTTCCTGGAGAAATGCTTCCTGCTCCTC-CCGCCCTC-CCCACCACCATCCTGCTGTATTTAAAGCTGCTTTGGTGATGCTTTGCTC--ATCTCAGTG s panTro4.chr1 224792701 417 + 228333871 AGATGTTCTGCCGGCTCTCCCTACCATGAAAGTTCTCTGAGAAGCCAGT--AAAAGTGGCAGCCTCTAAAGAGGTTAGCTTTATTTGGTGGAGGGGCGGTAGGGGTGGCACACACTGAGGAAGAT-TCGGATGGTGGCACATCCTTGTGGTCAGGCCCAGAAATCCTCATTGCCCTGCAGCCACCCAGGTCATGATTCATGAGGTGGGGG--TCTGAGCTGAGAATGGCTGGCCGGTTCTCTGACTTCGTGGGTGTGTAATAGTTGGTTGCAACTGACTTCTCAAGAATGACAGTTACTGACTGGAGCTGGCAGAGAGGTGTGGCCAAGTTCCTGGAGAAATGCTTCCTGCTCCTC-CCGCCCTC-CCCACCACCACCCTGCTTTATTTAAAGCTGTTTTGGTGATGCTTTGCTC--ATCTCAGCG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226152599 417 - 229942017 AGATGTTCTGCCGGCTCTCCCTACCATGAAAGTTCTCTGAGAAGCCAGT--GAAGATGGCAACCTCTAAAGAGGTTAGCTTTATTTGGTGGAGGGGTGCTAGGGGTGGCACACACTGAGGAAGAT-TCAGATCGTGGCACATCCTTGTGGTCAGGCCCAGAAATCCTCATTGCCCTACAGCCACCCAGTTCATGATTCATGAGGTGGGGG--TCTGAGCTGAGAATGGCTGGCCAGTTCTCTGACTTCGTGGGTGTGTAATAGTTGGTTGCAACTGACTTCTCAGGAATGACAGTTACTGACTGGAGCTGGCAGAGAGGTGTGGTCAAGTTCCTGGAGAAATGCTTCCTGCTGCTC-CTGCCCTC-CTCACCACCAGCCTGCTTTATTTAAAGCTGTTTTGGTGATGCTTTGCTC--ATCTCAGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140042331 419 - 143122389 AGATGTTCTGCCGGCTCTCCCTACCATGAAAGTCCTCTGAGAAGCCAGT--GAAGATGGCAGCCTCTAAAGAGGTTAGCTTTATTTGGTGGAGGGGCGGTAGGGGTGGCACACACTGAGGAAGAT-TCAGATCGTGGCACATCCTTGCGGTCAGGCCCAGAAATCCTCATTGCCCTGCAGCCACCCAGGTCATGATTCATGAGGTGGGAGTCTCTGAGCTGAGAATGGCTGGCCGGCTCTCTGACTTCGTGGGTGTGTGATAGTTGGTTGCAACTGACTTCTCAGGAATGACAGTTACTGACTGGAGCTGGCAGAGAGGTGTGGTCAAGTTCCTGGAGAAATGCTTCCTGCTCCTT-CTGCCCTC-CCCACCACCATCCTGCTTTATGTAAAGCTGTTTTGGTGATGCTTTGCTC--ATCTCAGTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16758295 412 - 229590362 AGATGTTCTGCCAGCTCTCCCTACCATGAAAGTCCTCTGAGAAGCCAGT--GAAGATGGCAGCCTCTAAAGAGGTTAGCTTTATTTATTTGAGGGGTGGTAGGGGTGGCACACACTGAGGAAGGT-TCGGATCATGGCACATCTTTGTGGTCAGGTCTAGAAATCCTCA-TGCCCTGCAGCCACCCAGGTCATGATTTATGAGGTGGGAG--TCTGCGCTGAGAATGGCTGGCCGGTTCTCTGACTTTGTGGGTGTGTCATAGTTGGTTGCAACTGACTTCTCAGGAGTGACAGTCACTGACTGGAGCTGAC----AGGTGTGGTCACGTTCTTGGAGAAAGGCTTCCTGCCTCTC-CTGCCCTC-CCCACCGCCATCCTGCTTTATTTAAAGCTATTTTGGTGATGCTTTGCTC--ATCTCAGCG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223520752 412 - 227556264 AGATGTTCTGCCAGCTCTCCCTACCATGAAAGTCCTCTGAGAAGCCAGT--GAAGATGGCAGCCTCTAAAGAGGTTAGCTTTATTTATTTGAGGGGTGGTAGGGGTGGCACACACTGAGGAAGGT-TCGGATCATGGCACATCTTTGTGGTCAGGTCTAGAAATCCTCA-TGCCCTGCAGCCACCCAGGTCATGATTTATGAGGTGGGAG--TCTGCGCTGAGAATGGCTGGCCGGTTCTCTGACTTTGTGGGTGTGTCATAGTTGGTTGCAACTGACTTCTCAGGAGTGACAGTCACTGACTGGAGCTGAC----AGGTGTGGTCACGTTCTTGGAGAAAGGCTTCCTGCCTCTC-CTGCCCTC-CCCACCGCCATCCTGCTTTATTTAAAGCTATTTTGGTGATGCTTTGCTC--ATCTCAGCG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16570596 413 - 220367699 AGATGTTCTGCCAGCTCTTCCTACCATGTAAGTCCTCTGAGAAGCCAGT--GAAGATGGCAGCCTCTAAAGAGGTtagctttatttatttgaggGGTGGTAGGGGTGGCACACACTGAGGAAGAT-TCGGATCATGGCACATCTTTGTGGTCAGGTCCAGAAATCCTCCTTGCCCTGCAGCCACCCAGGTCATGATTTAGGAGGTGGGAG--TCTGAGCTGAGAATGGCTGGCCGGTTCTCTGACTTCGTGGGTGTGTAATAGTTGGTTGCAACTGACTTCTCAGGAATGACAGTTACTGACTGGAGCTGAC----AGGTGTGGTCAGgttcttggagaaaggcttcctgcctctc-ctgccctc-cccaccaccaTCCTGCTTTATTTAAAGCTATTTTGGTGATGCTTTGCTC--ATCTCAGCG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82369926 410 + 85787240 AGATGTTCTGCCGGTTCTCCCTACCGTGAAAGTTCTTTGAGAAGCCAGT--GAAGATGGCAGCCTCTAAAGAGGTTAGCTTTATTTATTTGAGGGGTGGTAGGGGTGGCACACACTGAGGAAGAT-TCGCATCGTGGCCCATCTTTGTGGTCAGGTCCAGAAATCCTCATTGCCCTGCAGCCACCCGGGTCATGATGTATGAGGTGGGAG--TCTGAGCTGAGAATGGCTGGC---TTCTCTGACTTCGTGGGTGTGTAATAGTTGGTTGCAACTGACTTCTCAGGAATGACAGTTACTGACTGGAGCTGAC----AGGTGTGGTCAGGTTCTTGGAGAAAGGCTTCCTGCCTCTC-CTGCCCTC-CCCACCACCATCCTGCTTTATTTAAAGCTGTTTTGGTGATGCTTTGCTC--ATCTCAGCG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14043980 419 - 49578535 AGCCGTTCAGCCAGCTCTCCCTACCGTGAACATCCTCTGAGAAGCCGGTAAGAAGGTGGCAGCCG-TAAAGAGGTCAGCTTTGTTCGGTGGAGGGACCAC---GGCGGCCCACACTGGGGAAGATGTTGGACCGTGGCACG-CCCTGTGGTCAGCTCCAGAACTCCTCACTGCTCTGCAGACACCCGGGTCATGATGAACGAGGTGGGAG--TCTGAATTGAGAACGGTTGGCCGGTTCTCTGACTTCGTGGGTGTGTAGCTGTTGGCTGCAGCTGACTTCTCAGGAATGACAGTTACGGACTGGAGCTGGCAGAGCGGTGTGGTCCGGTTCCTGGAGAAAGGCTTCTTGCTCCTCTCCGCCCCCTCCCGCCGCCATCCTGCTTTATTTAAAGCTGGTTTGCTGATGCTTTGCTCCGGCCTCAGTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36240514 196 + 80974532 AGATGCCACAGCGGC-CACCGTGCCCTGCTCGTGTCCTGAAA---------TAGGCAGGGAGCCTC----------AGC-------------------------------------------GAC----------------------------------------------------------CCCGGGTCA--------------GGAG--GCCAAACTGAG---------------------------------------GTGGGTCCCG------TTCTCAGGAGTGACAG----------------------AGGTGGGGGAAG--CCCCCGATGAAGGCTTCTTGCCCCTC-CTGGCACA---------------------TTCAGGGCATTTTCTGTGATGCTTTGCTC--AGTTCAGTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178666290 210 + 195471971 I a score=171056.000000 s hg38.chr1_KI270759v1_alt 48072 52 + 425601 AATTTTCAGTTCAGACCTTTTCACTAAGGATCATTATGGAAGAAAGAGGGGT s panTro4.chr1 224793118 52 + 228333871 AATTTTCAGTTCAGACCTTTTCACTAAGGATCATTATGGAAGAAAGAGGGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226153016 52 - 229942017 AATTTTCAGTTCAGACCTTTTCACTAAAGATCATTATGGAAGAAAGAGGGGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140042750 52 - 143122389 AATTTTCAGTTCAGACCTTTTCACTAAAGATCATTATGGAAGAAAGAGCGGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16758707 49 - 229590362 AATTTTCAGTTCAGACCTTTGCAGTAAAG---ATTATGAAAGAAAGAGGGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223521164 49 - 227556264 AATTTTCAGTTCAGACCTTTGCAGTAAAG---ATTATGAAAGAAAGAGGGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16571009 49 - 220367699 AATTTTCAGTTCAGACCTTTGCAGTAAAG---ATTATGAAAGAAAGAGGGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82370336 49 + 85787240 AATTTTCAGTTCAGACCTTTGCAGTAAAG---ATTATGGAAGAAAGAGGGGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14044399 50 - 49578535 AG-TCTCAGTTCAGACCTTT-CACTAAAGATCATTACGGAAGAAAGAGGGGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178666500 51 + 195471971 AATTTTCAG-CCAGACCTTTTCCCAAAAGCTTATTGTGGAAGGAAGGAGGat i mm10.chr1 I 210 I 944 s canFam3.chr7 36240710 52 + 80974532 AACTTGGAGCACAGACCTTTTCAGTTACGATCCTTAGGGAAGGCCGAAGGGT i canFam3.chr7 C 0 C 0 a score=654662.000000 s hg38.chr1_KI270759v1_alt 48124 219 + 425601 AAGAAGTGTGGCTGAGTAGCCTAGGATTAATTCATCAGTCCCCAAATAAGCAAACACGATGTCTCAGGATGGACGGTGAAATTCTGGACCTC--ACAGGTA-----------GGTCTTGGAGTTGTTAGTTGTGAATGTAGACCCCCAAGTTCAGATGTTGCCAGGATTTTACATCCTCTGCTTAAGGCTGTGT--TGTTATTTCTGA-----TGTTTATGA-GTGAAAACAAAAACATA s panTro4.chr1 224793170 219 + 228333871 AAGAAGTGTGGCTGAGTAGCCTAGGATTAATTAATCAGTCCCCAAATAAGCAAACAAGATGTCTCAGGATGGACGGTGAAATTCTGGACCTC--ACAGGTA-----------GGTCTTGGAGTTGTTAGTTGTGAATACAGACCCCCAAGTTCAGATGTTGCCAGGATTTTACATCCTCTGCTTAAGGCTGTGT--TGTTATTTCTGA-----TGTTTATGA-GTGAACACAAAAACATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226153068 219 - 229942017 AAGAAGTATGGCTGAGTAGCCTATGATTAATTCATCAGTCCCCAAATAAGCAAACAAGATGTCTCAGGATGGACGGTGAAATTCTGGACCTC--ACAGGTA-----------GGTCTTGGAATTGTTAGTTGTGAATACAGACCCCCAAGTTCAGATGTTGCCAGGATTTTACATCCTCTGCTTAAGGCTGTGT--TGTTATTTCTGA-----TGTTTATGA-GTGAAAACAAAAACGTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140042802 219 - 143122389 AAGAAGTATGGCTGAGTAGCCTATGATTAATTCGTCAGTCCCCAGATAAGCAAACAAGATGTCTCAGGATGGGTGGTGAGATTCTGGACCTC--ATAGGTA-----------GGTCTTGGAGTTGTTAGTTGTGAATATAGACCCCCAAGTTCAGACGTTGCCAGGATTTTACGTCCTCTGCTGAAGGCTGTGT--TGTTATTTCTGA-----TGTTTATGA-GTGAAAACAAAAATGTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16758756 219 - 229590362 AAGAAGTATGGCTGAGTAGCCTGTGGTTAATTAATCAGTCCCCAAATAAGCAAACAAGATGTCTCAGGACGGACGGTGAAATTTGGGACCTC--ACAGGTG-----------GGTCTTGGAGTCGTTAGTTGTGAATACAGACCCCTAAGTTCAGATGTTGCCAGGATTTTGCATCCTCTGCTTAAGGCTGTGT--TGTTATTTCTGG-----TGTTTGTGA-GTGAAAACAAAAGCGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223521213 219 - 227556264 AAGAAGTATGGCTGAGTAGCCTGTGGTTAATTAATCAGTCCCCAAATAAGCAAACAAGATGTCTCAGGACGGACAGTGAAATTTGGGACCTC--ACAGGTG-----------GGTCTTGGAGTCGTTAGTTGTGAATACAGACCCCTAAGTTCAGATGTTGCCAGGATTTTGCATCCTCTGCTTAAGGCTGTGT--TGTTATTTCTGG-----TGTTTGTGA-GTGAAAACAAAAGCGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16571058 219 - 220367699 AAGAAGTATGGCTGAGTAGCCTGTGATTAATTAGTCAGTCCCCAAATAAGCAAACAAGATGTCTCAGGATGGACGGTGAAATTTGGGACCTC--ACAGGTG-----------GGTCTTGGAGTCATTAGTTGTGAATACAGACCCCTAGGTTCAGATGTTGCCAGGATTTTGCATCCTCTGCTTAAGGCTGTGT--TGTTATTTCTGG-----TGTTTGTGA-GAGAAAACAAAAGCGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82370385 219 + 85787240 AAGAAGTATGGCTGAGTAGCCTATGATTAATTCATCAGTCCCCAAATAAGCAAACAAGATGTCTGAGGATGGACGGTGAAATTTGGGACCTC--ACAGGTG-----------GGTCTTGGAGTCGTTAGTTGTGAATACAGACCCCCAAATTCAGATGTTGTCAGGATTTTGCATCCTCTGCTTAAGGCTGTGT--TGTTAGTTCTGA-----TGTTTGTGA-GTGAAAACAAAAGCGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14044449 217 - 49578535 AAGAAGCATGGCTGCGTAGCCCGTGATTAACCCTTCAGTCCCCAAATAAGCAAACGAGATGTCCAAGGATGG-TGGTTACGTTCTGGGCCTC--GTAGGTA------------GCCTTGGGGTCGTTAGTTGTGAATACAGGCACCCAAGTTCAGATGTCGCCAGGATTTTTTATCCTCTGCTTAAGGCTGTGT--TGTTATTTCTGA-----TTTTTATGA-GTGAAAACAAGAATGCA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36240762 206 + 80974532 AGGACGTATTGCTGATGATCCCATGATTTATCCATCCCGCCCCTAATAAGCCAATGA-ATGTCTCCTGATGGATAGTTAAGTTCCGGGCCCTGAGCAGATATCCCGTCACCAGGTCTCAGAGTGGTCAGTC-TGTCTG-------------TCGGATGTTACAGGCACT-----TCCTCTGCCCCGGGGCGTGTTATGTCATCTCCGAATAACCATTTACAATGTG-------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178666551 944 + 195471971 I a score=2367874.000000 s hg38.chr1_KI270759v1_alt 48343 691 + 425601 CAGCTCAGGTCCTTA---TCCTCTGAGGGTCT-CCT-CAGCCTGGGGCACCTCCCGCCAAACGCTTCATGAC--TCC-CCCACCAAGCACATCCTG-GCACA-ATCTGGCATGAGGTCTGAGCTACATAAATGTGGTTTTA------TGAGGGAACAAAGCAAGTTTTGGTTTTCTTTAGAATTGTACGAAATTATACCTTCAAGATGACTTTGCCTTATCGTGGCTTTTGTTTTGCTTCTCCGAGAAGGAAACTACAAAGTTACCATGATGT-AAATCCGGCCAGAGGCTTGAAGTGATTTCATAGT-AAAAGCCACCTCAGCCGTCCCCTCTGAAACCCaggccaagaggcagagatgccaatgacaggctctgtgaccagcctcgtaagccatgaaccagatccacggtttcacatggccaggacctcagggccgcatcagcctcttccaccacactctctcgt----gaacagctggtgacactgtcagcggcgcctctgtcacaaggaagggcaatgTCCTGTGTAGCCAGATGGCGGGGGAGTTGGAGGCTGGGCCAGGCGGTCAGGATCTGCATTCCACCAGCCCGTGGGGTTTTCATAGCCA-GGGGCACTGTGTCCACCTTGGGCGTGGCCATACACAGCCACCACTTCTAACCCCATTGCCAGCTACAACGG----------------AAGAGAGCATGCTGTTTAGAGTTCAGTACCTC s panTro4.chr1 224793389 691 + 228333871 CAGCTCAGGTCCTTA---TCCTCTGAGGGTCT-CCT-CAGCCTGGGGCACCTCCCGCCAAACGTTTCATGAC--TCC-CCCACCAAGCACATCCTG-GCACA-ATCTGGCATGAGGTCTGAGCTACATAAATGTGGTTTTA------TGAGGGAACAAAGCAAGTTTGGGTTTTCTTTAGAATTGTACCAAATTATACCTTCAAGATGACTTTGCCTTATCGTGGCTTTTGTTTTGCTTCTCCGAGAAGGAAACTGCAAAGTTACCATGATGT-AAATCGGGCCAGAGGCTTGAAGTGATTTCATAGT-AAAAGCCACCTCAGCCGTCCCCTCTGAAACCCAGGCCAAGAGGCAGAGATGCCAATGACAGGCTCTGTGACCAGCCTCGTAAGCCATGAACCAGATCCACGGTTTCACATGGCCAGGACCTCAGGGCCTCATCAGCCTCTTCCACCACACTCTCTCGT----AAACAGCTGGTGACACTGTCAGCGGTGCCTCTGTCACAAGGAAGGGCAATGTCCTGTGTAGCCAGATGGTGGGGGAGTTGGAGGCTGGGCCAGGCGGTCAGGATCTGCATTCCACCAGCCCGTGGGGTTTTCATAGCCA-GGGGCACTGTGTCCACCTTGGGCGTGGCCATACACACCCACCACTTCTAACCCCATTGCCAGCTACAACGG----------------AAGAGAGCATGCTGTTTAGAGTTCAGTACCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226153287 706 - 229942017 CAGCTTAGGTCCTTA---TCTTCTGAGGGTCT-CCT-CAGCCTGGGGCACCTCCCGCCAAACGCTTCACGAC--TCC-CCCACCAAGCACATCCTG-GCACA-ATCTGGCATGAGGTCTGAGCTACATAAATGCGGTTTTA------TGAGGGAACAAAGCAAGTTTTGGTTTTCTCTAGAATTGTACCAAATTATACCTTCAAGATGACTTTGCCTTATCGTGGCTTTTGTTTTGCTTCTCCTAGAAGGAAACTGCAAAGTTACCATGATGT-AAATCTGGCCAGAGGCTTGAAGTGATTTCATAGT-AAAAGCCACCTCAGCTGTCCCCTCTCAAACCCAGGCCAAGAGGCAGAGATGCCAATGACAGGCCCTGTGACCAGCCTTGTAAGCCATGAACCAGATCCATGGTTTCACATGGCCAGGACCTCAGGGCTGCATCAGCCTCTTCCACCACACTCTCTCGT----AAACAGCTGGTGACACTGTCAGCGGTGCCTCTGTCACGAGGAAGGGCAATGGCCTGTGTAGCCAGATGGCGGGGGAGTTGGAGGCTGGGCCGGGCGGTCAGGATTTGCATTCCACCAGCCTGTGGGGTTTTCATAGCCA-GGGGCACTGTGTCCACTATGGGCGTGGCCGTACACACCCACCACTTCTAACCCCATTGCCAGCTACAACGGAAGAGTCAAAATA-TTAAGAGAGCGTGCTGTTTAGAGTTCAGTACCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140043021 699 - 143122389 CAGCTCAGGTCCTTA---CCCTCTGAGGGTCT-CCT-CAGCCTGGGGCAACTCCTGCCAAACGCTTCATGAC--TCC-CCCACCAAGCGCATCCTG-GCACA-ATC-----TGAAGTCTGAGCTACATAAATGCAGTTTTA------TGAGGAAACAAAGCAAGTTTTGGTTTTCTCTAGAATTGTACCAAATGATATCTTCAAGATGACTTTGCCTTATCATGGCTTTGGTTTTGCTTCTCCGAGAAGGAAACTGCAAAGTTACCATGATAT-AAATCCTGCCAGAGGCTTGAAGTGATTTCATGGT-AAAAGCCACCTCAGCTGTCCCATCTCAAACCCAGGCCAAGAGGCAGAGATGCCAATGACAGGCCCTGTGACCAGCCTCATAAGCCATGAACCAGGTCCATGGTTTCACATGGTCAGGACCTCAGGGCCGCATCAGCCTCTTCCACCACA--CTCTCGT----AAACAGCTGGTGACACTGTCAGCGTTGCCTGTGTCACCAGGAAGGGCAATGGCCTGTGTAGCCAGATGCGGGGGCAGTTGGAGGCTGGGCCAGGTGGTCAGGAACTGCATTCCACCAGCCTGTGGGGTTTTCATAGCCA-GGGGCACTGTGTCCACCTTGGGCGTGGCCATACACACCCACCACTTCTAACCCCATTGCCAGCTACAATGGAAGAGTCAAAATA-TTAAGAGAGCGTGCTGTTTAGAGTTCAGTACCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16758975 702 - 229590362 CAGCTCAGGTCCTTA---TCCTCTAAGGGTCT-CCT-CAGCCTGGAGCACCTCCCGCCAAAGGCGTCATCAC--CCC-CCCACCAAGCCCATCCTG-GCACA-GTCTGGCACGAAGGCTGAGCTACATAAATGTGGTTTTA------TGAGGGAACAAAGCGATTTTTGGTTTTCTCTAGAATTGTACCACATTATATCTTCAAAATGAC--TGCCTTATCGTGGCTTTGGTTTTGCTTCTCCGAGAAGGAAACTGCAAAGTTACCATGATGA-AAATCCAGCCAGAGGCTTGAAGTGATTTCATAGT-AAAAGCCACCTCAGCTGTCCCCTCTCAAACCCAGGCCAAGAGGCAGAGATGCCAATGACAGGCCCGGTGACCAGCCTCGTAAGCCATGAACCAGATCCGTGGTTTCACATGGCCAGGACCTCAGGGCCGCATCAGTCTCTTCCACCACA--CTCTCGT----AAACAGCTGGTGACACTGTCAGCGGTGCCTCTGTCACCAGGAAGGGCAGTGGCCTGTGTAGCCAGAT-CGGGGGGAGTTGGAGGCTGGGCCAGGCAGTCAGGATCTGCCTTCCACCAGCCTGCGGGGTTTTCACAGCCAGGGGGCGCTGTGTCCACCTTGGACGTGGCCATACACACCCACCA-TTCTAACCCCATTGCCGGCTACAACGCAAGAGTCAAAATATTTAAGAGAGCGTGCTGTTGAGAGTTCAGGACCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223521432 702 - 227556264 CAGCTCAGGTCCTTA---TCCTCTAAGGGTCT-CCT-CAGCCTGGGGCACCTCCCGCCAAAGGCGTCATCAC--CCC-CCCACCAAGCCCATCCTG-GCACA-GTCTGGCACGAAGGCTGAGCTACATAAATGTGGTTTTA------TGAGGGAACAAAGCGATTTTTGGTTTTCTCTAGAATTGTACCACATTATATCTTCAAAATGAC--TGCCTTATCGTGGCTTTGGTTTTGCTTCTCCGAGAAGGAAACTGCAAAGTTACCATGATGA-AAATCCAGCCAGAGGCTTGAAGTGATTTCATAGT-AAAAGCCACCTCAGCTGTCCCCTCTCAAACCCaggccaagaggcagagatgccaatgacaggcccggtgaccagcctcgtaagccatgaaccagatccgtggtttcacatggccaggacctcagggccgcatcagtgtcttccaccaca--ctctcgt----aaacagctggtgacactgtcagcggtgcctctgtcaccaggaagggcagtgGCCTGTGTAGCCAGAT-CGGGGGGAGTTGGAGGCTGGGCCAGGCAGTCAGGATCTGCCTTCCACCAGCCTGCGGGGTTTTCACAGCCAGGGGGCGCTGTGTCCACCTTGGACGTGGCCATACACACCCACCA-TTCTAACCCCATTGCCGGCTACAACGCAAGAGTCAAAATATTTAAGAGAGCGTGCTGTTGAGAGTTCAGGACCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16571277 701 - 220367699 CAGCTCAGGTCCTTA---TCCTCTAAGGGTTT-CCT-CAGCCTGGGGCACCTCCCGCCAAAGGCGTCATCAc--ccc-cccACCAAGCCCATCCTG-GCACA-GTCTGGCACGAAGTCTGAGCTACATAAATGTGGTTTTA------TGAGGGAACAAAGCGATTTTTGGTTTTCTCTAGAATTGTACCACATTATATCTTCAAAATGAC--TGCCTTATCGTGGCTTTGGTTTTGCTTCTCCGAGAAGGAAACTGCAAAGTTACCATGATGA-AAATCCAGCCAGAGGCTTGAAGTGATTTCATAGT-AAAAGCCACCTCAGCTGTCTCCTCTCAAACCCAGGCCAAGAGGCAGAGATGCCAATGACAGACCCGGTGACCAGCCTCGTAAGCCATGAACCAGATCCGTGGTTTCACATGGCCAGGACCTCAGGGCCGCATCAGTCTCTTCCACCACA--CTCTCGT----AAACAGCTGGTGACACTGTCAGCGGTGCCTCTGTCACCAGGAAGGGCAGTGGCCTGTGTAGCCAGAT--GGGGGGAGTTGGAGGCTGGGCCAGGCAGTCAGGATCTGCATTCCACCAGCCTGCGGGGTTCTCACAGCCAGGGGGCGCTGTGTCCACCTTGGGCGTGGCCATACACACCCACCA-TTCTAACCCCATTGCCGGCTACAACGCAAGAGTCAAAATATTTAAGAGAGCGTGCTGTTGAGAGTTCAGGACCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82370604 702 + 85787240 CAGCTCAGGTCCTTA---TCCTCTAAGGGTAT-CCT-CAGCCTGGGGCACCTCCCGCCAAAGGCGTCATGAC--CCC-CCCACCAAGCCCATCCTG-GCACA-GTCTGGCACGAAGTCTGAGCTACGTAAATGTGGTTTTA------TGAGGGAACAAAGCAATTTTTGGTTTTCTCTAGAATTGTACCAAATTATATCTTCAAGATGACTTTGCCTTATGGTGGCTTTGGTTTTGCTTCTCCGAGAAGGAAACTGCAAAGTTACCATGATAT-AAATCCAGCCAGAGGCTTGCAGTGATTTCATAGT-AAAAGCCACCTCAGCTGTCCCCTCTCAAACCCaggccaagaggcagagatgccagtgacaggcccggcgaccagcctcgtaagccatgaaccagatccgtggtttcacatggccaggacctcagggccacatcagcctcttccaccaca--ctctcgt----aaacagctggtgacactgtcagtggtgcctctgtcaccaggaagggcagtgGCCTGTGTAGCCAGAT--GGGGGGAGCTGGAGGCTGGGCCAGGCAGTCAGGATCTGCATTCCACCAGCCTGCGGGGTTTTCACAGCCAGGGGGCGCTGTGTCCACCCTGGACGTGGCCATACACACCCACCA-TTCTAACCCCATTGCCAGCTACAACGGAAGAGTCAAAATA-TGAAGAGAGCGTGCTGCTGAGAGTTCAGTACCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14044666 696 - 49578535 CAGCTCAGGTCCTCA---GCCTCTAAGGGTCT-ACT-CAGCCCGGGGCACCTCCCGCCGAAGCCTTCATGAC--TTCGCTCAGCAAGCCATCCTCA-GCACA-GTCTGGCATGAGGTCCGCGCTGCATAAGTGTGGCTT--------AGAGGGGTCAAAG-AGGCTTTGGGTTTCTCTATGATTGTACCAAATTATATCTTCAGGATGACTCTGCCTTATCGTGGCGCTGGTTTTGCTTCTCCAGGGAGGAAACTGCAAAGTTACCATGATGTGAAATCTGGCCAGAGGCTTGAAGTGATTTCATAGTAAAAAGCCACCTCGGCTGTCCCCTCTCAAGCCCTAGCCAACCGGCAGAGATGCAAACAACAGGCTCTGTGAGCAGCCTCGTGAGCCATGAACCAGATCCCCGGATTCACATGGTCAGGACCTCAGGGCTGCATCAGCCTCTTCCACCACA--CTCTTGT----CAACAGCTCGTGACACTGTCAGCAGTGCCTCTGTCGCCAGGAAGGGCAATGGCCTGTGTAGCCAGATAGCAGGGGAGTTGGAGGCTGGGCCAGGCGGTCGGGATCTGAATT----CAGCCTGTGGGGTTGTCATAGCCA-GGGACACTGTGTCCACCTTGGGCACGGCCATACACACCCACCACTTCTAATGCCGTTGTCAGCTACAATGGAAGAGTCAAAACA-TTAAGAGA----GCTGTTTATAGCTCAGTACCTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178667495 684 + 195471971 CAGCTCTGGCCTCTAAGGCTCTCTAAGGGTCT-CCTCCAGCCTTGGGCATTTAGGTCAGAGTCTGTGATTTC--CCT-CAAACAAAGCAAAGCC-A-GCACAGGCCTGGTAAATGGTCTGAGCTACGTAAATGTGGGTTTGTTATTTTGAAAGAACAAAGAAATTCTTGGTGTCTTCTGT-----CACCAAATTACATCTTCA-GATGACTTTGTCTTCTTGTGGCACTGCTTTTCTTTCTCCAGAAGGGAAACTGCACAGTTACCATGATGGGAAGTCTGGCCAGAGGTTTGAAATTATCTTATAGA-CAAAGCCACCTCCGTTGTCCCCGTTGTTACCCTGGGCAAGAGAC--AAATGTAAATAACAGACTCCAGAAGCCGTCCTTGAAGCTATGTACCAAATCCACATTTTTAAGTGACCAAGAACT-GGGACTCCA--AGTCCTTTCCACTGCA--CGCTTGCCTAGAAACAGCTGGTGGCTCTCTGAGCCACGACACTGTCATCAGGAAGGGAACTG-TCTATAATGCCAGTGAGAGGGAAGAATAGGGGCTGGGACGAGTGTCCAGGATGTGACTTCTACCAGCGTGTGGGGCTT--ATAGTAG-----------------TCTGAGGGTTGTCATACAC--CCTCCAAACCCAGCTTCACTGCCAGCTTCCGCTGGAG---CAGAGCA-TTAAGGGAATGAGCCATGTAGAGTTTAGTGTTTT i mm10.chr1 I 944 C 0 s canFam3.chr7 36240968 669 + 80974532 CCGCTCGGC---------CCCTCCCAGGGTCTGCCA-CAGGCGGGGGCACCTAGGGCCGAAGGCATCGTGACGTCCC-CCACCCAAACCTAGCCAGCGCCGA-GCCTGGCACTCTGCCTTTGCTACATATGTGTGGGTTT-------TGCAGGAACAATGAACTCTCTGGTCTGCTCTATAATTGCATCAAATTACATCTTAGAGATAACTT---CTTTCGGTGGCGTTGGTTTTCTTTGTCCCGGAGGGAAACTGCAAAGTTACCCTGATACAAAATCTGGGCAGAGGCCTGAAGCGATTTCCTAGG-AAGAGCGACCTCAGCGTTGCCCACTCCAATCCAGGCCGGGCGGCCAAGATGTAAATGACAGGCTCCGCGAGCAGCCGCCGGAGCCACGAACCAGATTAACGGTTTCATGTACACAGGACTTGGGTCCCACATCAGCCCTTTCCACCACG--CTCCTGT----AAACAGCTGGGGGCACTGTCAGCAGCAGAGATGTGTGTAGG-GGGACAATGGTATGTGTACCCACAAAGAAGGGAGGCCCAAGGCTG------------AGGACCTGTTCTGCACTGGCATGCG-------------CA-GGGGT-CCGTGCCCACCCACGGC-TGCCTGCGCACATCCATGG--CCCTGCACGACCGTCAGCCACCATTGAACAGTCACACTA-TGAAAAGACTGTGCTTTTTAGAATTCAGTATCCC i canFam3.chr7 C 0 I 229 a score=135505.000000 s hg38.chr1_KI270759v1_alt 49034 47 + 425601 CACA-TAAGGGAAACTGAGGTAGAGGAGAGCCGGCATTAGCTTCTGGG s panTro4.chr1 224794080 48 + 228333871 CACACTAAGGGAAACTGAGGTAGAGGAGAGCCGGCATTCGCTTCTGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226153993 48 - 229942017 CACACTAAGGGAAACTGAGGTAGAGGAGAGCCAGCATTAGCTTCTGGG i ponAbe2.chr1 C 0 I 243 s nomLeu3.chr5 140043720 48 - 143122389 CACACTAAGGGAAACTGAGGCAGAGGAGAGCCAGCATTAGCTTCTGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16759677 48 - 229590362 CACACGAAGGCAAACCGAGGTAGAGGAGAGCCAGCCTTGGCGTCTGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223522134 48 - 227556264 CACACGAAGGCAAACCGAGGTAGAGGAGAGCCAGCCTTGGCTTCTGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16571978 48 - 220367699 CACACTGAGGCAAACCGAGGTAGAGGAGAGCCAGCCTTGGCTTCTGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82371306 48 + 85787240 CACACGAAGGCAAACCAAGGTAGAGGAGAGCCAGCATTGGCTTCTGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14045362 48 - 49578535 CGTACTAAGGGAAACTGAGGTAGAGGAGAGCCAGCATTAACTTCTGGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178668179 46 + 195471971 ATGTCCAAGGAAAATCAAGG--ACAGAAACCTAGGCTGTGTGTCTGGG i mm10.chr1 C 0 C 0 e canFam3.chr7 36241637 229 + 80974532 I a score=237655.000000 s hg38.chr1_KI270759v1_alt 49081 103 + 425601 CTTAGAACACCCACCTTGCCCT--CCTGCATCGAGATTCATCTCCAGTGAGAGCAGGTGAGAAGGAATCAGAGGAGAGCACCTAGGCCCGGGTGTCAACCTTGAC s panTro4.chr1 224794128 103 + 228333871 CTTAGAACACCCACCTTGCTGT--CCTGCACCGAGATTCATCTCCAGTGAGAGCAGGTGAGAAGGAATCAGAGGAGAGCACCTAGGCCCGCGtttcaaccttgac i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140043768 103 - 143122389 TTTAGAACACCCACCTTGCTGT--CCTGTATCGAGATTCATCTCCAATGAGAGCAGGTGAGAGGGAATCAGAGGAGGGCACCTAGGCCCAGATTTCAACCTTGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16759725 103 - 229590362 TTTAGAACACCCACCCTGCTGT--CCTGCATCGGGATTCATCTCCAAGGAGAGCAGGTGAGAAGGAATCAGAGGAGAGCACCTAGGCCCGGGTTTCACCCTTCAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223522182 103 - 227556264 TTTAGAACACCCACCCTGCTGT--CCTGCATCGGGATTCATCTCCAAGGAGAGCAGGTGAGAAGGAATCAGAGGAGAGCACCTAGGCCCGGGTTTCACCCTTCAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16572026 103 - 220367699 TTTAGAACACCCACCCTGCTGT--CCTGCATCGGGATTCGTCTCCAAGGAGAGCAGGTGAGAAGGAATCAGAGGAGAGCACCTAGGCCTGGGTTTCACCCTTGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82371354 103 + 85787240 TTTAGAACACCCACCCTGCTGT--CCTGCATCGAGATTCATCTCCAAGGAGAGCAGGTGAGAAGGAATCAGAGGAGAGCACCTAGGCCCGGGTTTCACCCTTCAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14045410 103 - 49578535 TTGAGAACACCCGCCTTGCTGT--CCTGCAGCGAGATGCCCCTCTAATGAGAGTGGGTGAGAAGGAACCCCGTGAGAGCACCGAGGCCAGGGTTTCAGCCTTGAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178668225 102 + 195471971 TATAAAATACCTGGCCTCCTTTACCTTGCAA-GAGACTTTCCTCCACTGAGAGTC-ATGTGGAGGGATCCTGTGA-AGTTCAAAGGTTAGGGTTTCTGCCATGAC i mm10.chr1 C 0 I 384 e canFam3.chr7 36241637 229 + 80974532 I e ponAbe2.chr1 226154041 243 - 229942017 I a score=53250.000000 s hg38.chr1_KI270759v1_alt 49184 54 + 425601 CCCACGGACATCTAGGACTGGATGATTTTTAttttattttatttatttatttat s panTro4.chr1 224794231 50 + 228333871 cccacggacatctaggactggatgatttttattttat----tttatttattcat i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140043871 54 - 143122389 CCCACGGACATCTAGGACTGGATGTTTTTTATtttattttatttatttatttat i nomLeu3.chr5 C 0 I 4 s rheMac3.chr1 16759828 47 - 229590362 CCCACGGACATCTAGGACTTGATGATGATGATGATCt----tttttttttt--- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223522285 47 - 227556264 CCCACGGACATCTAGGACTTGATGATGATGATGATCt----tttttttttt--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16572129 43 - 220367699 CCCACGGACATCTAGgacttgatgatgatgatgatc--------atttttt--- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82371457 45 + 85787240 CCCACGGACATCTAGGACTTGATGATGATGATGGTG------Atttttttt--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14045513 37 - 49578535 CCCGCTAACACCTAGTACTGCATGAtt--------------tttttttttt--- i calJac3.chr19 C 0 C 0 e mm10.chr1 178668327 384 + 195471971 I e canFam3.chr7 36241637 229 + 80974532 I e ponAbe2.chr1 226154041 243 - 229942017 I a score=1287895.000000 s hg38.chr1_KI270759v1_alt 49238 510 + 425601 ttttgagacggagtctcgctctgtcacccaggctagagtgcactggcgcgatctcggctcgctgcaacctatgcctttcaggttcaagcgatcctcctgcctcagcctcctgagtg------gctggggctacaggcacccaccaccacacctggctaatttt--------------------------------ttgtat---tttgtttagtagagacag-ggtctcaccatgttggccaggctggtctcgaactcc---------------------------------------------------tgacctcaggtggtccgcccatctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccAGTGATTCTTTTTTCAGGTGCTGGGAtgcggggtgctgctctgtacagtgtatgatgtctagctgcatccctggcctctactcactagacgtcagtagccctctcccagttatgacaaccaaa-aatgtctccagatatttcctaatgtcccctgagcatcaaaatcaccATCTccagcctgggcaacatggcgaaactccatctctac-aaaaaatacaaa s panTro4.chr1 224794281 508 + 228333871 ttttgagacggagtctcgctctgtcacccaggctagagtgcactggcgcgatctcagctcactgcaacctgtgcctttcaggttcaagcgattctcctgcctcagcctcctgagtg------gctggggctacaggcacctaccgccacacctggctaatttt--------------------------------ttgtat---tttgtttagtagagacag-ggtctcaccatgttggccaggctggtctcgaactcc---------------------------------------------------taacctcaggtgatccgcccatctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccagtggttcttttttcaggtgctgggatg-ggggtggtgctctgcgcggtgtgtgatgtttagcagcat-cctggcctctactcactagacgtcagtagccctctcccagttatgacaaccaaa-aatgtctccagatatttcctaatgtcccctgagcatcaaaatcaccATCTccagcctgggcaacatggcgaaactccatctctac-aaaaaatacaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226154284 510 - 229942017 ttttgagatggagtctcgctctgtcacccaggctagagtgcactggcgcgatctcagctcactgcaacctgtgcctttcaggttcaagcgattctcctgcctcagcctcctgagtg------gctgggactacaggcacccaccaccacacctggctaacttt--------------------------------ttgtat---tttgtttagtagagacag-ggtctcaccatgttggccaggctggtctcgaactcc---------------------------------------------------taacctcaggtgatccgcccatctcggcctcccaaagtgctgggattacaggcgtgagccactgggcccggccAGTGATTCTTTTTTCAGGTGCTGGGAtggggggtggtgctctgcatagtgtacgatgtttagcagcacccctggtttttactcactagacgtcagtagccctctcccagttgtgacaaccaaa-aatgtctccagatatttcctaatgtcccctgagcatcaaaatcaccATCTccagcctgggcaagatggcgaaactccatctctac-aaaaaatataaa i ponAbe2.chr1 I 243 C 0 s nomLeu3.chr5 140043929 504 - 143122389 ttttgagacagagtctcgctctgtcacccaggctagagtgcactggtgtgatctcggctcactgcaacctctgcctttcaggttcaagcaattctcctgcctcagcctcctgagtg------gctgggactacaggcacccaccaccaagcccagctaatttt--------------------------------ttgtat---tttttttagtagagacag-ggtctcaccatgttggccaggctgatctcaaactcc---------------------------------------------------tgacctcaggtgatctgc------aggcctcccacagtgctgggattacaggcgtgagccactgtgcccggccAGTGATTCCTTTTTCAGGTGCTGGGATgggggctggtgttctgtgcagtgtacgatgtttagcagcatccctggcctctactcactagacgtcagtagccctctcccagttgtgacaaccaaa-aatgtctccagatatttcctaacgtcccctgagcatcaaaatcaccATCTccagcctgggcagcgtggtgaaacaccatctctac-aaaaaatacaaa i nomLeu3.chr5 I 4 C 0 s rheMac3.chr1 16759875 496 - 229590362 tttttagacggagtgttgctctgtcacccaggctggagggcactggcgcggtcttggctcactgcaagctccgcctttcaggttcagtcgattctcctgcctcagcctcctgagtg------tctgggactacaggcacccaccaccacacccagctaattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------------gtgctgggcttacaggcatgagccactgcgcccagccAGTGATTGTTTTTTCAGGTGCTGGGAtggggggtggtgctctgcacagcgtaagatgtttagcagcatccctggcctctactcactagacatcagtagccctctcccagttgtgacaaccaaaaaatgtctccaggtatttcctgatgtcccctgagcatcaaaatcacTATCTccagcctgggcaatatggcaaaactctgtccctat-aaaaaatacaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223522332 504 - 227556264 tttttagacggagtgttgctctgtcacccaggctggagggcactggcgcagtcttggctcactgcaagctccgcctttcaggttcagtcgattctcctgcctcagcctcctgagtg------tctgggactacaggcacccaccaccacacccagctaatttt----------------------------------tttt---tttttttaatagagacggaggtctcaccttgttggccaggctggtcttgaactcc---------------------------------------------------tgacctcaggtgacccgc------aggcctccccaagtgctgggcttacaggcatgagccactgcgcccagccAGTGATTGTTTTTTCAGGTGCTGGGAtggggggtggtgctctgcacagcgtaagatgtttagcagcatccctggcctctactcactagacatcagtagccctctcccagttgtgacaaccaaagaatgtctccaggtatttcctgatgtcccctgagcatcaaaatcacTATCTccagcctgggcaatatggcaaaactccgtctctac-aaaaaatacaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16572172 508 - 220367699 tttttagacggagtcttgctctgtcacccaggctggagggcactggcgcggtcttggctcactgcaagctccgcctttcaggttcagtcgattctcctgcctcagcctcctgagtg------tctaggactacaggcacccaccaccacacccagctaatttt------------------------------tttttttt---tttttttaatagagacggaggtctcaccttgttggccaggctggtcttgaactcc---------------------------------------------------tgacctcaggtgacccgc------aggcctcccaaagtgctgggattataggcatgagccactgcgcccagccagtgaTTCTTTTTTCAGGTGCTGGGATGGGGGGTGGTGCTCTGCGCAgtgtaagatgtttagcagcatccctggcctctactcactagacATCAGTAGCCCtctcccagttgtgacaaccaaaaaatgtctccaggtatTTCCTGATGTCCCCTGAGCATCAAAATCACcgtctccagcctgggcaataaggcaaaactccgtctctac-aaaaaatacaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82371502 502 + 85787240 tttttaggcggagtcttgctctgtcacccaggctggagtgcactggcgcgatcttggctcactgcaagttctgcctttcaggttcaatcaattctcctgcctcagcctgctgagtg------tctgggactacaggcgcccactgccacacccagctaatttt------------------------------------tt---tttttttagtagagatggaggtctcaccttgttggccaggctgatcttgaactcc---------------------------------------------------tgacctcaggtgacccgc------aggcctccccaagtgctgggcttacaggcatgagccactgtgcccagccAGTGATTCTTTTTTCAGGTGCTGGGAtggggggtggtgctctgcgcagcgtaagatgtttagcagcatccctggcctctactcactagacatcagtagccctctcccagttgtgacaaccaaaaaatgtctccaggtatttcctgatgtcctctgagcatcaaaatcaccATCTccagcctgggcaatatggcaaaactccgtctctac-aaaaaatacaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14045550 483 - 49578535 ttttgagacagagtctcgctctgacacccaggctggagtgcagtggcgcgatcttggcttactgcaacttctgcctttcaggttcaagcgattctcctgcctcagccttccaagtggctgtagctggggctacaggcacctaccaccatgcccagataatttt--------------------------------ttgtatatatttttttagtagagatgg-tatctcaccatcttggccaggctggtcttgaactcc---------------------------------------------------tgacctcaggtgatccaccagcctcggcctcccacagtgctgggatcacaggcatgagtcacggtgcctggccAATGGTTCTTTCTTCAGGTGCTGGGGTGGGGGATGGTGctc-------------------------------------tactcactggatgtcaggagccctctcccacttgtaacaaccaaa-aatgtctccagatatttcctaatgtcccctgagcatcaaaatcaccATCTccagcctgggcaacacggcggaaacctatctttacaaaaaaatacaaa i calJac3.chr19 C 0 I 275 e mm10.chr1 178668327 384 + 195471971 I e canFam3.chr7 36241637 229 + 80974532 I a score=42517.000000 s hg38.chr1_KI270759v1_alt 49748 15 + 425601 aatgagccaggcatg s panTro4.chr1 224794789 15 + 228333871 aatgagccaggcatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226154794 15 - 229942017 aatgagccaggcatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140044433 15 - 143122389 aatgagccaggcatg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16760371 15 - 229590362 aattggccaggcatg i rheMac3.chr1 C 0 I 511 s macFas5.chr1 223522836 15 - 227556264 aatgaggcgggcatg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16572680 15 - 220367699 aatgagccgggcatg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82372004 15 + 85787240 aatgagccgggcatg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14046308 15 - 49578535 aattagctgggcatg i calJac3.chr19 I 275 C 0 e mm10.chr1 178668327 384 + 195471971 I e canFam3.chr7 36241637 229 + 80974532 I a score=379446.000000 s hg38.chr1_KI270759v1_alt 49763 178 + 425601 gtggtgtgcagctgtagtcccagctatttggaagcctgaggtgggaggaccatttgagcccaggagagtgaggctgcagtgagctgtgatcacgccactgcatttcagcctgggcaacacagtgagaccctgtctcaaaaaaaaaaaaaaaaag-aagaagaagaaGAAAGAATTTAAA s panTro4.chr1 224794804 177 + 228333871 gtggtgtgcagctctagtcccagctatttggaagcctgaggtgggaggatcatttgagcccaggagagtgaggctgcagtgagccgtgatcacaccactgcacttcagcctgggcaacacagtgagaccctgtctcaaaaaaaaaaaaaaaaa--aagaagaagaaGAAAGAATTTAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226154809 163 - 229942017 gtggtgtgcagctgtagtcgcagctatttggaagcctgaggtgggaggatcatctgagcccaggagagcgaggctgcagtgagccgtgatcacaccactgcacttcagcctgggcaacacagtgagaccctgtctcaaaaaaaaa----------------aagaggaaagaattaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140044448 171 - 143122389 gtggtgtgcagctgtagtcccagctatctgggaggctgaggtgggaggatcatctgagcccaggagagcgaggctgcagtgagccgtgatcacaccactgcacttcagcctgggcgacacagtgagaccctgtctcaaaaaaaaaaaaaaaaa--------aagaagaaagaaTTAAAA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223522851 179 - 227556264 gtggcctgcagctgtagtcccagctatctgggaggctgaggtgggaggatcatctgagcccaggagagcgaggttgcagtgagctgtgatcacaccactgcacttcagcctgggcaacacagtgagaccctgtctcaaaaaaaaaaaaaaaaaagaagaagaagaaGAAAGAATTTAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16572695 176 - 220367699 gtggcctgcagctgtagtcccagctatctgggaggctgaggtgggaggatcatctgagcccaggagagcgaggttgcagtgagccgtgatcataccgctgcacttcagcctgggcaacaaagtgagaccctgtctcaaaaaaaaaaaaaaaa---aaaaaaaggaagaaagaattttaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82372019 173 + 85787240 gtggcctttagctgtagtcccagctatctgggaggctgaggtgggaggatcatctgagcccaggagagcgaggttgcagtgagctgtgatcacaccactgcacttcagcctgggcaacacagtgagaccctgtctcaaaaaaaaaaaaaaaa------aaaaggaagaaaGAATTTAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14046323 173 - 49578535 gtggcgtgcagctgtagtcccagctgttcgagaggctgaggtggaaggatcatctgagcccaggagcatgaggctgcagtgagccgtgatcacaccactgcacttcagcctgggcagcacagtgagaccctgactcaaaaaaaaaaaaatta------aaaaggcaaaaGGAATTTTAA i calJac3.chr19 C 0 C 0 e mm10.chr1 178668327 384 + 195471971 I e canFam3.chr7 36241637 229 + 80974532 I e rheMac3.chr1 16760386 511 - 229590362 I a score=41621.000000 s hg38.chr1_KI270759v1_alt 49941 16 + 425601 AAACTTACCAGCGGTC s panTro4.chr1 224794981 16 + 228333871 AAACTTACCAGTGGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226154972 16 - 229942017 aaaCTTACCAGCGGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140044619 16 - 143122389 AAACTTCCCAGTGGTT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223523030 16 - 227556264 AAACTTACCAGCGGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16572871 16 - 220367699 aaacttaccagCGGTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82372192 16 + 85787240 AAACTTACCAGCGGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14046496 16 - 49578535 AAACGCACCAGCAGTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36241866 16 + 80974532 aaaattaccagggttt i canFam3.chr7 I 229 C 0 e mm10.chr1 178668327 384 + 195471971 I e rheMac3.chr1 16760386 511 - 229590362 I a score=7092.000000 s hg38.chr1_KI270759v1_alt 49957 2 + 425601 AA s panTro4.chr1 224794997 2 + 228333871 AA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226154988 2 - 229942017 AA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140044635 2 - 143122389 AA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16760897 2 - 229590362 aa i rheMac3.chr1 I 511 C 0 s macFas5.chr1 223523046 2 - 227556264 AA i macFas5.chr1 C 0 I 328 s papAnu2.chr1 16572887 2 - 220367699 AA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82372208 2 + 85787240 AA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14046512 2 - 49578535 AA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36241882 2 + 80974532 ga i canFam3.chr7 C 0 C 0 e mm10.chr1 178668327 384 + 195471971 I a score=13987.000000 s hg38.chr1_KI270759v1_alt 49959 4 + 425601 GAAC s panTro4.chr1 224794999 4 + 228333871 GAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226154990 4 - 229942017 GAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140044637 4 - 143122389 GAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16760899 4 - 229590362 GAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223523376 4 - 227556264 GAAC i macFas5.chr1 I 328 C 0 s papAnu2.chr1 16572889 4 - 220367699 GAAC i papAnu2.chr1 C 0 I 324 s chlSab2.chr25 82372210 4 + 85787240 GAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14046514 4 - 49578535 GAAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36241884 4 + 80974532 gagc i canFam3.chr7 C 0 C 0 e mm10.chr1 178668327 384 + 195471971 I a score=5683.000000 s hg38.chr1_KI270759v1_alt 49963 3 + 425601 CAT s panTro4.chr1 224795003 3 + 228333871 CAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226154994 3 - 229942017 CAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140044641 3 - 143122389 CAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16760903 3 - 229590362 CGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223523380 3 - 227556264 CGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16573217 3 - 220367699 CGC i papAnu2.chr1 I 324 C 0 s chlSab2.chr25 82372214 3 + 85787240 CAC i chlSab2.chr25 C 0 I 329 s calJac3.chr19 14046518 3 - 49578535 CAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36241888 3 + 80974532 ccc i canFam3.chr7 C 0 C 0 e mm10.chr1 178668327 384 + 195471971 I a score=364962.000000 s hg38.chr1_KI270759v1_alt 49966 114 + 425601 TGGAGTAGA-GAGAGAATTTGGTGAAAAGACATCTGCATTCTACCTTTAGTCTCTGGGCTATGTCTCCGGGGCTATTTATCATTGTCTTGAATTATTTTGTATAATAAGCAGCAG s panTro4.chr1 224795006 114 + 228333871 TGGAGTAGA-GAGAGAATTTGGTGAAAAGACATCTGCATTCTACCTTTAGTCTCTGGGCTATGTCTCCAGGGCTATTTATCATCGTCTTGAATTATTTTGTATAAAAAGCAGCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226154997 114 - 229942017 TGGAGTAGA-GAGAGAATTTGGTGAAAAGACATCTGCATTGTACCTTTAGTCTCTGGGCTATGTCTCCAGGGCTATTTATCATCATCTTGAATTATTTTGTATAAAAAGCAGCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140044644 114 - 143122389 TGGAGTAGA-GAGAGAATTTGGTGAAAAGACATCTGCATTCTACCTTTAGTCTCTGGGCTATGTCTCCAGGGCTATTTATCATCGTCTTGAATGATTTTGTATAAAAAGCAGTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16760906 113 - 229590362 TGGAGTAGG-GAGAGAATTTGGCGAAAAGACATCTGCA-TCTACCTTTAGTCTGCGGGCTGTGTCTCCAGGGCTGTTTATCATCGTCTTGAATTATTTTTTATGAAAAGCAGCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223523383 113 - 227556264 TGGAGTAGG-GAGAGAATTTGGCGAAAAGACATCTGCA-TCTACCTTTAGTCTGCGGGCTGTGTCTCCAGGGCTGTTTATCATCGTCTTGAATTATTTTTTATGGAAAGCAGCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16573220 113 - 220367699 TGGAGTAGG-GAGAGAATTTGGCGAAAAGACATCTGCA-TTTACCTTTAGTCTGCGGGCTGTGTCTCCAGGGCTGTTTATCATcgtcttgaattattttttatgaaaagcAGCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82372546 113 + 85787240 TGGAGTAGG-GAGAGAATTTGGTGAAAAGACATCTGCA-TCTACCTTTAGTCTGCGGGCTGTGTCTCCAGGGCTATTTATCATCGTCTTGAATTATTTTTTGTGAAAAGCAGCAG i chlSab2.chr25 I 329 C 0 s calJac3.chr19 14046521 110 - 49578535 TGGGAT-----AGAGAATCTGGTGAACAGACATCTGCGTTACACCTTCAGTCTCTGGGCTTTGTCTCAAGAGCTATTTATTATCATCTTGAATTATTTTTTATAAAAAGCAGTGG i calJac3.chr19 C 0 I 1 s canFam3.chr7 36241891 114 + 80974532 tgGAGTAGGAGAGAAAGTTCGGTGAAGAGACATTTGCTATATACCTGTAGTCTCTGGGCTATGGCCGAGGAGCCA-TTATCATTGCCTTGAATTACTGTCTAGAAAAAGCAGCAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178668327 384 + 195471971 I a score=133100.000000 s hg38.chr1_KI270759v1_alt 50080 54 + 425601 -CCCCCACGCTCAGGTGTTTGGAGGAGTTGCAATTCACTGGGTGGAGGGTAGAGC s panTro4.chr1 224795120 54 + 228333871 -CCCCCACGCTCAGGTGTTTGGAGGAGTTGCAATTCATTGGGTGGAGGGCAGAGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226155111 54 - 229942017 -CCCCCACACTCAGGTGTTTGCAGGAGTTGCAGTTCATTGGGTGGAGGGCAGAGT i ponAbe2.chr1 C 0 I 274 s nomLeu3.chr5 140044758 54 - 143122389 -CCCCCACGCTCAGGTGTTTGGAGGAGTTGTAGTTCATTGGGTGGAGGGCAGAGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16761019 52 - 229590362 -CCCTCACGCTCAGGTGTTTGGAGGAGTTGCAATTCATTGGGTGGAGGGC--AGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223523496 52 - 227556264 -CCCTCACGCTCAGGTGTTTGGAGGAGTTGCAATTCATTGGGTGGAGGGC--AGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16573333 54 - 220367699 -CCCTCATGTGCAGGTGTTTGGAGGAGTTGCAATTCATTGGGTGGAGGGCAGAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82372659 54 + 85787240 -CCCCCATGCTCAGGTGTTTGGAGGAGTTGCAGTTCATTGGGTGGAGGGCAGAGT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36242005 53 + 80974532 TCCCCAGCACCAAGGT-CTCAGAGGAGCGGCAGTTGGTTGGGTGGAGTGGAGAA- i canFam3.chr7 C 0 C 0 e mm10.chr1 178668327 384 + 195471971 I e calJac3.chr19 14046631 1 - 49578535 I a score=207925.000000 s hg38.chr1_KI270759v1_alt 50134 82 + 425601 GTCTCATGAAATCCTCGGCTCCTGTCTGAAGGCCACAGCTGGGGTGAGGCCCTTGAATGGGAGAGGCAGATGTCCCTGTCTA s panTro4.chr1 224795174 82 + 228333871 GCCTCATGAAATCCTCGGCTCCTGTCTGAAGGCCACGGCTGGGGTGAGGCACTTGAATGGGACAGGCAGGTGTCCTTGTCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226155439 81 - 229942017 GTCTCATGAAATCCTCGGCTCCTGTCTGAAGGCCCCGGCTGGGGTGAGGCAC-TGAATGGGAGAGGCAGATGTCCCTGTCTA i ponAbe2.chr1 I 274 C 0 s nomLeu3.chr5 140044812 82 - 143122389 ATCTCATGAAATCCTTGGCTCCTGTCTGAAGGCCACGGCTGGGGTGAGGCACTTGAATGGGAGAGACAGATGTCCCTGTCTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16761071 82 - 229590362 GTCTCCTGAAATCCTCAGCTTCTGTCTGAAGGCCACGGCTGGGGTTAGGTACTTGAACAGGAGAGGCAGGTGTCCCTGTCTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223523548 82 - 227556264 GTCTCCTGAAATCCTCAGCTCCTGTCTGAAGGCCACGGCTGGGGTTAGGTACTTGAACAGGAGAGGCAGGTGtccctgtcta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16573387 82 - 220367699 GTCTCCTGAAATCCTCAGCTCCTGTCTGAAGGCCACGGCTGGGGTTAGGTACTTGAACAGGAGAGGCAGATGTCCCTGTcta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82372713 82 + 85787240 GTCTCCTGAAATCCTCAGCTCCTGTCTGAAGGCCACGGCTGGGGTTAGGTACTTGAACAGGAGAGGCAGATGTCCCTGTCTA i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36242058 63 + 80974532 -------------------TCCCCCCATGGGGCCACAGCTAGGGATAGTTCCTTGAAAGGGAGAGGCAGATGTCCTTTTCCA i canFam3.chr7 C 0 C 0 e mm10.chr1 178668327 384 + 195471971 I e calJac3.chr19 14046631 1 - 49578535 I a score=418660.000000 s hg38.chr1_KI270759v1_alt 50216 155 + 425601 CTTCTTCCTTCTCCCTGCCTCCTCTTGGCCTTCCTTCCCATCCCCTCCTCTGTGACAGCACACCACAC-----------CGtcacctg-ggtgctcgtcagcacgcagattccagagcccggctccccagagattctgataca--------gggggtctgagaggggacctggaa s panTro4.chr1 224795256 155 + 228333871 CTTCTTCCTTCTCCCTGCCTCCTCTTGGCCTTCCTTCCCATCCCCTCCTCTGTGACAGCGCACCACAC-----------CGtcacctg-ggtgctcgtcagcatgcagattccagagcccggctccccagagattctgataca--------gggggtctgagaggggacctggaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226155520 165 - 229942017 CTTGTTCCTTCTCCCTGCCTCCTCTCGGCTTTCCTTCCCATTCCCTCCTCTGTGACAGCGCACCACACTGTCACCTGAGTGtcacctg-agtgctcgtcagcatgcagattccagagcccggctccccagagattctgataca---------ggggtctgagaggggacctggaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140044894 155 - 143122389 CTTCTTCCTTCTCCCTGCCTCCTCTCGGCCTTCCTTCCCATCCCCTCCTCTGTGACAGCGCACCACAC-----------CGtcacctg-ggtgctcgtcagcatgcagattccagagcccggctccccagagattctgataca--------gggggtctgaggggggacctggaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16761153 154 - 229590362 CTTCTTCCTTCTCCCTG-CTCCTCTCGGTCTTCCTGCCCATCCCCTCCTCTGTGACAGCACACCACAC-----------CGtcacctgaggtgctcgtcagcacgcagattccagagcccggctccccagagattctgataca---------ggggcctgggagggggcctggaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223523630 154 - 227556264 cttctcccttctccctg-ctcctctcggtcttcctgcccatcccctcctcTGTGACAGCACACCACAC-----------CGtcacctgaggtgctcgtcagcatgcagattccagagcccggctccccagagattctgataca---------ggggcctgggagggggcctggaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16573469 155 - 220367699 cttcttccttctccctg-ctcCTCTCGGTCTTCCTTCCCATCCCCTCCTCTGTGACAGCACACCACAC-----------CGTCACCTGAGGTGCTCGTCAGCATGCAGATTCCAGAGCCCGgctccccagagattctgataca--------ggGGGCCTGGGAGGGGGCCTGGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82372795 153 + 85787240 CTTCTTCCTTCTCCCTG-CTCCTCTCGGTCTTCCTTCCCATCCCCTCGTCTGTGACAGCACAGCACAC-----------Catcacctgaggtgctcgtcagcatgcagattccagagcccggctccccagagattctgataca---------ggggtctgaga-ggggcctggaa i chlSab2.chr25 C 0 C 0 s mm10.chr1 178668711 145 + 195471971 CCTGTCCTTTCTCCCCTCCTTATGTCTGTGGCCCTTTCCTCCCCTCCCTCTGTGAC---------CTC----------------CCGG-AGGGCTCGTTAGCTCTTGAGTTCCAGAGCCCTTCTTCC--AAGATTCCACCAGGTGCCCAGTGTGCGTCTAAGGGAAGACAGGG-- i mm10.chr1 I 384 C 0 s canFam3.chr7 36242121 147 + 80974532 CCTGCTCCCTCTCTCTTCCCTTGCTCA---TCCTTTCCCATCCCTTC----ATGAGagtgtgccccag-----------aatcacccaggaggcttgctaaaatgtagattccagagccctgctccccagagattctgataca----------ggatctgagagaggtcctggga i canFam3.chr7 C 0 I 22 e calJac3.chr19 14046631 1 - 49578535 I a score=329677.000000 s hg38.chr1_KI270759v1_alt 50371 135 + 425601 acctgcctcactgtgagcttcccaagtgactctgcgcagggggc-gtggtgaggtcacactttgagaaacaGGCCCTAGAGGCTTTTCTGAACACACGAGCCCTCCCAGTACTCCCAGGACAC--TAAAGTGTAGCAG s panTro4.chr1 224795411 135 + 228333871 acctgcctcactgtgagcttcccaagtgactctgcacagggggc-gtggtgaggtcacactttgagaaacaGGCCCTAGAGGCTTTTCTGAACACACAAGCCCTCCCAGTACTCCCAGGACAC--TAAAGTGTAGCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226155685 135 - 229942017 acctgcctcactgtgagcttcccaagtgactctgcgcagggggc-acggtgaggtcacactttgagaaacaGGCCCTAGAGGGTTTTCTGAACACACAAGCCCTCACAGTACTCCCAGGACAC--TAAAGTCTAGCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140045049 135 - 143122389 acctgcctcactgtgagcttcccaagtgaccctgcacagggggc-gtggtgaggtcacactttgagaaacaGGCCCCAGAGGGTTTTCTGAACACACAAGCCCTCCCAGTCCTCCCAGGACAC--TAAAATCTAGCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16761307 137 - 229590362 acctgcctcactgtgagcttttcaagtgactctgcacggggggc-gtggtgaggtcacactttgagaaacaGGCCCTAGAGCATTTTCTGAACACACAAGCCCTCCCAGTCCTCCCAGGATACTATAAAGTCTAGCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223523784 137 - 227556264 acctgcctcactgtgagcttttcaagtgactctgcacggggggc-gtggtgaggtcacactttgagaaacaGGCCCTAGAGCATTTTCTGAACACACAAGCCCTCCCAGTCCTCCCAGGATACTATAAAGTCTAGCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16573624 137 - 220367699 ACCTGCCTCACTGTGAGCTTTTCAGGTGACTCTGCACAGGGCGC-ATGGTGAggtcacactttgagaaacaggCCGTAGAGGGCTTTCTGAACACACAAGCCCTCCCAGTCCTCCCAGGATACTATAAAGTCTAGCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82372948 137 + 85787240 acctgcctcactgtgagcttttcaggtgactctgcacagggggc-gtggtgaggtcacactttgagaaacaGGCCCTGGAGGGCTTTCTGAACACACAAGCCTTCCCAGTCCTCCCGGGACACTATAAAGTCTAGCAG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178668856 104 + 195471971 -CCTGCCTGCTGAGGGGTTGCTCAGG----------CAGGGGGCTGTGGTGAAGCAGCATCTTGA---------CCAAGGTGACT------------AGACCCCTCCTGTACTGTCAGGACAC--TGAAATGTCtcag i mm10.chr1 C 0 C 0 e canFam3.chr7 36242268 22 + 80974532 I e calJac3.chr19 14046631 1 - 49578535 I a score=166924.000000 s hg38.chr1_KI270759v1_alt 50506 71 + 425601 AAACAAGCAAAAAAACACAACTATACTAGCAAACGTGACAAAAGCAAAAAGGGATAAAAATTCCTAAGAAA s panTro4.chr1 224795546 70 + 228333871 AAACAAGCAAAAAAG-ACAACTATACTAGCAAACGTGACAAAAGCAAAAAGGGATAAAAATTCCTAAGAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226155820 70 - 229942017 AAACAAGCAAAAAAG-ATGACTGTACTAGCAAACGTGACAAAAGCAAAAAGGGATAAAAATTCCTAAGAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140045184 70 - 143122389 AAACAAGCAAAAAAG-ACAACTATACTAGTAAATGTGACAAAAGCAAAAAGGGATAAAAATTCCTAAGAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16761444 70 - 229590362 AAACAAGCAAGAAAG-ACAACTATACTGGCAAACGTGACAAAAGCAAAAAGGGATAAAAATTCCTAAGAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223523921 70 - 227556264 AAACAAGCAAGAAAG-ACAACTATACTGGCAAACGTGACAAAAGCAAAAAGGGATAAAAATTCCTAAGAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16573761 70 - 220367699 AAACAAGCAAGAAAG-ACAACTATACTGGCAAACgtgacaaaagcaaaaagggATAAAAATTCCTAAGAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82373085 70 + 85787240 AAACAAGCAAAAAGG-ACAGCTATACTGGCAAACGTGACAACAGCAAAAAGGGATTAAAATTCCTAAGAAA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178668960 0 + 195471971 C e canFam3.chr7 36242268 22 + 80974532 I e calJac3.chr19 14046631 1 - 49578535 I a score=583384.000000 s hg38.chr1_KI270759v1_alt 50577 202 + 425601 ggccaggcacagtggctcatgcctgtattcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagttcgagagcagcctggccaacatggtgaaactccgtctctactaaaag-tacaaaaattagctgggcgtggtggcgggcgcctgtgatcccaaggtactggggaggctgaggcaggagaattgctt s panTro4.chr1 224795616 201 + 228333871 ggccaggcacagtggctcatgcctgtattcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagttcgagagcagcctggccaacatggtgaaaccccatctctactaaaaa-tacaaaaattagctgggcgtggtggcgggtgcctgtaattcc-agctacttgggaggctgaggctggagaatcgctt i panTro4.chr1 C 0 I 1396 s ponAbe2.chr1 226155890 202 - 229942017 ggccaggcgcggtggctcatgcctgtattcctagcactttgagaggctgaggtgggtggatcacctgaggtcaggagtttgagaacagcctggccaacatggtgaaactccgtctctactaaaag-tacaaaaattagctgggcgtggtggcgggcgcctgtgatcccaaggtactggggaggctgaggcaggagaattgctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140045254 202 - 143122389 ggccaggcgtggtggctcatgcctgtcatcctagcactttgggaggctgaggtgagtggatcacctgaggtcaggagtttgagagcagcctggccaacatggtgaaactccatctctactaaaag-tacaaaaattagctgggtgtggtggcgggtgcctgtgatcccaaggtactcgggagactgaggcagaagaattgctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16761514 202 - 229590362 GTccaggcgtggcggctcatgcctgtgatcccagcactttgggaggccgaggtgggtggatcacctgagatcaggaatttgagagcagcttggtcaacatggtgagactctgtctctactaaaag-tacaaaaattagctgggcgtggtggcgggcgcctgtaatcccaggggactcggggggctgaggcaggagaattgctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223523991 202 - 227556264 GTccaggcgtggcggctcatgcctgtgatcccagcactttgggaggccgaggtgggtggatcacctgagatcaggaatttgagagcagcttggccaacatggtgaaactctgtctctactaaaag-tacaaaaattagctgggcgtggtggcgggcgcctgtaatcccagggtactcgggaggctgaggcaggagaattgctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16573831 202 - 220367699 GTCCAGGCGTGGcaactcatgcctgtgatcccagcactttgggaggccgaggtgggtggatcacctgagatcaggaatttgagagcagcttggccaacatggtgaaactctgtctctactaaaag-tacaaaaattagctgggcgtggtggcgggcgtctgtaatcccagggtactcgagaggctgaggcaggagaattgctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82373155 202 + 85787240 GTccaggcgtggtggctcatgcctgtgatcccagcactttgggaggccgaggtgggtggatgacctgagatcaggaatttgagagcagcttggccaacatggtgaaactctgtctctactaaaag-tacaaaaattagctgggtgtggtggcgggcgcctgtaatcccagggtactcgggaggctgaggcaggagaattgctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14046632 202 - 49578535 ggccgggcatggtggctcacttctgtaatcccagccctttgagaggccaaggtgggtggatctcctgaggtcaggagttccagagcagtctggccaacatggtgaaaccctgtctctgctaaaagatacaaaaattagccaggtgtggtggtgggtgcctgtagtccc-agctacatggcagtctaagacaggagaactgctt i calJac3.chr19 I 1 C 0 e mm10.chr1 178668960 0 + 195471971 C e canFam3.chr7 36242268 22 + 80974532 I a score=916795.000000 s hg38.chr1_KI270759v1_alt 50779 428 + 425601 gaacctaggaggcagaggttgcagtgagccgagattgcaccattgtactccagcctgggtgagagagtgagactctgtctcaaaagaaaa---aaaaaa--ttaaaaaaTTCCTAAGAAAGATGAAGCTATTCAATGTGGGAACCTCTCTCACTGAAAATGGATTCATCGAGTCattgattgattcgacacatggcttctgtgtgcctacttgacttcaggcattattctaggcatgacgcattccgcagtgaacaacacagacaaatgtgcctgctgtcacctagtttatattttgcagggggagacagaca--------------------------------------------------atgaacggaatgtagttagaaggtggccatgctgtagagagaattaaagcagagaaaggtggttagggagtgttggggctagtttgcagt-atcactagatgatccaggaaggcctcgttg s ponAbe2.chr1 226156092 431 - 229942017 gaacctgggaggtggaggttgcagtgagctgagattgcaccattgcactccagcctgggcgacagagtgagactctgtctcaaaagaaaa---aaaaaaaattaaaaaaTTCCTAAGAAAGATGAAGCTATTCTATGTGGGAACCTGTCTCACTGAAAATGGATTCATCGAGTCattgattgattcgacacatggcttctgtgtgcctacttgacttcaggcattattctaggcatgacgcattcagcagtaaacaacacagacaaatgtccctgctgtcacctagtttatattttgcggggggagacagaca--------------------------------------------------atgaaccgaatctagttagaaggtggccatgctgtagagagaattagagcagagaaaggtggttagggagtgttggggctagttcgcagttgtcattagatgatccaggaaggcctcattg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140045456 429 - 143122389 gaacctgggaggcagaggttgcagtgagccgagattgcaccattgcactccagcctgggcgagagagtgagactctgtctcaaaagaaaa---aaaaaa--ttaaaaaaTTCCTAAGAAAGATGAAGCTATTCAATGTGGGAACCTCTCTCACTGAAAATGGATTCATCAAGTCattgattcattcgacacatggcttctgtgtgcctacttgacttcaggcattattctaggcaagacgcattcagcagtgaacaacacagacaaatgtgccagctgtcacctcgtttatattttgcagggggagacagaca--------------------------------------------------atgagccgaatctagttagaaggtggccatgctgtagagagaattaaagcagagaaaggtggttagggagtgttggggctagtttgcagttgtcattagatgatccaggaaggcctcaccg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16761716 478 - 229590362 gaacctgggaggcagaggttgcagtgagccaagattgcaccactgcactccagcctgggcgagagagtgaga--ctgtctcaaaagaaaaa--aaaaaa--ttaaaaaaTTCCTAAGAAAGATGAAGCTAATTGATGTGGGAACCTCTGTCACTGAAAATGGATTCATCGAGTCATCGattcattcgacacatggcttctgtgtgcctacttgacttcaggcattattctaggcatgacacattcagcggtggacaacacagacaaatgtccctgctgtcacctactttatattttgcagagggagacagacaatgagcggaatctagttagaaaggggccatgctgtagagagaattaaagcatgagcggaatctagttagaagggggccatgctgtagagagaattaaagcagagaaaggtggttagggagtgttggggccagtttgcaactgtcattagatgatccaggaaggcctcattg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223524193 428 - 227556264 gaacctgggaggcagaggttgcagtgagccaagattgcaccactgcactccagcctgggcgagagagtgaga--ctgtctcaaaagaaaaa--aaaaaa--ttaaaaaaTTCCTAAGAAAGATGAAGCTAATTGATGTGGGAACGTCTGTCACTGAAAATGGATTCATCGAGTCATCGattcattcgacacatggcttctgtgtgcctacttgacttcaggcattattctaggcatgacacattcagcggtggacaacacagacaaatgtccctgctgtcacctactttatattttgcagagggagacagaca--------------------------------------------------atgagcggaatctagttagaagggggccatgctgtagagagaattaaagcagagaaaggtggttagggagtgttggggccagtttgcaactgtcattagatgatccaggaaggcctcattg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16574033 430 - 220367699 gaacctgggaggcagaggttgcagtgagccaagattgcaccactgcactccagcctgggcgagagagtgaga--ctgtctcaaaagaaaaaacaacaaa--ttaaaaaattcctAAGAAAGATGAAGCTAATTGATGTGGGAACCTCTGTCACTGAAAATGGATTCATCGAGTCATCGATTCATTCGACACATGGCTTCTGTGTGCCTACTTGACTTCAGGCATTATTCTAGGCATGACACATTCAGCGGTGGACAACACAGACAAATGTCCCTGCTGTCACCTAGTTTATATTTTGCAGGGGGAGACAGACA--------------------------------------------------ATGAGTGGAATCTAGTTAGAAGGGGGCCGTGCTGTAGAGAGAATTAAAGCAGAGAAAGGTAGTTAGGGAGTGTTGGGGCCAGTTTGCAACTGTCATTAGATGATCCAGGAAGGCCTCATTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82373357 424 + 85787240 gaacctgggaggcagaggttgcagtgagccaagattgcaccattgtactccagcctgggcgagagagtgaga--ctgtctcaaaagaaaaaaaaaaaaa--ttaaaaaaTTCCTAAGAAAGATGAAGCTAATTGATATGGGAACCTCTGTCACTGAAAATGGATTCATCGAGTCATCGattcattcgacacatggcttctgtgtgcct-----acttcaggcattattctaggcatgacacattcagcagtggacaacacagaccaatgtccctgctgtcacctagtttatattttgcagggggagacagaca--------------------------------------------------atgagcggaatccagttagaagggggccatgctgtagagagaattaaagcagagaaaggtggttagggagtgttggggcca-tttgcaactgtcattagatgatccaggaaggcctcattg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14046834 411 - 49578535 gaacccgggaggtggaggttgcagtgagccgcgatcatgccactgcactccagcctgggtgacagagcaagactcagtctcaaaaaa------aaaaaa--TCA---------TGAGAAAGATGAAGCTAATCAATGTGGGATCCTCATTCACTG-AAATGGATTCGT-GAGTCattgattcattggacacattgcttctgtgtgcctaccggacgtcagccactgttctaggcatgacctatgc-gcagtgagcaacatagacgaatgaccctgctctcgtctagttcaga-tttgcagggggagacagata--------------------------------------------------atgaat-gaatctagctggaaggtagccacg-tgtagagagaatcagagcagaggaaggtggttagggagtgctgcggctggtctgcagttgccattagatgatccaggagggcctcattt i calJac3.chr19 C 0 I 316 e mm10.chr1 178668960 0 + 195471971 C e canFam3.chr7 36242268 22 + 80974532 I e panTro4.chr1 224795817 1396 + 228333871 I a score=430002.000000 s hg38.chr1_KI270759v1_alt 51207 195 + 425601 aaaaggtgatccttgagaccttgaaggcggtaagagatggccaggcagatatctgcaggtgagagttttctgggcaggaggaacagcaagtacaatgtcactgagctgggagtggacattcctggtgtgttcaaggaacagccagaaggctttcatggctggttcaggctgagtcagggaacaagtgtaggagct s ponAbe2.chr1 226156523 195 - 229942017 aaaaggtgatccttgagaccgtgaaggtgataagaaacggccaggcagatatctgcaggtgaaagttttctgtgcaggaggaacagcaagcagaacgtcactgagctgggagtggacattcctggtgtgttcaaggaacagccagaaggctttcatggctggtgcaggctgagtcagggagcaagtgtaggaact i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140045885 195 - 143122389 aaaaggttatccttgagaccttgaaggtggtaagaaacggccaggcagatacctgcaggtgaaagttttctgtgcaggaggaacagcaagtccaatgtcactgagctgggagtggacgttcctggtgtgttcaaggaacagccagaaggctttcacggctggtgcaggctgagtcagggagcaagtgtaggagct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16762194 191 - 229590362 aaaaggtgatccttgagaccttgaagctggtaggagatggtcaggcagatatctgcaggtgaaagtattctttgcaggaggaacagcaagtaca---tcactgagctgggagtggacattcctggtgtgttcaa-gaacagccagaaggctttcgtggctggtgcaggctgagtcagggagcgggtataggagct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223524621 191 - 227556264 aaaaggtgatccttgagaccttgaagctggtaggagatggtcaggcagatatctgcaggtgaaagtattctttgcaggaggaacagcaagtaca---tcactgagctgggagtggacattcctggtgtgttcaa-gaacagccagaaggctttcatggctggtgcaggctgagtcagggagcaggtataggagct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16574463 192 - 220367699 ACAAGGTGATCCTTGAGACCTTGAAGCTGGTAGGAGATGGTCAGGCAGATATCTGCAGGTGAAAGTATTCCTTGCAGGAGGAACAGCAAGTACA---TCACTGAGCTGGGAGTGGACATTCCTGGTGTGTTCAAGGAACAGCCAGAAGGCTTTCATGGCTGGTGCAGGCTGAGTCAGGGAGCAGGTATAGGAGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82373781 195 + 85787240 aaaaggtgatccttgagaccgtgaagctggtaggagatggtcaggcagatatctgcaggtgaaagtattctttgcaggaggaacagcaagtacaatgtcactgagctgggagtggacattcctggtgtgttcaaggaacagccagaaggctttcatggctggtgcaggctgagtcagggagcaggtataggagct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14047561 193 - 49578535 aaaaggtgatacttgagaccttgaaggtggtaagagatggtcaggcagatatctgcaggtgaatgttttctgtgtggaggaaacagcaggtagaaagtcactgagctgggagtgagcatccctgctgtgttcatggaacagccagaaggctttcctgcctggggca-gctgagt-agggagcgagtgtagaagct i calJac3.chr19 I 316 C 0 e mm10.chr1 178668960 0 + 195471971 C e canFam3.chr7 36242268 22 + 80974532 I e panTro4.chr1 224795817 1396 + 228333871 I a score=368821.000000 s hg38.chr1_KI270759v1_alt 51402 146 + 425601 gagggcagagagggaccaggaggccgag---tcctgcagagcccatggcagggacattgactttgactctgaaggaagtggggcgggggccaggggaggattttaagcc-gaggactggcaggatcagatttaagattgaaaaggatcac s ponAbe2.chr1 226156718 141 - 229942017 gagggcagagagggaacaggaggctgaggagtcctgcagagcccatggcagggatgttgactttgactctgaaggaagtgg--------cccggggaggattttaagcc-gaggactgccaggatcagatttaagatggaaaaggatcac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140046080 146 - 143122389 gagggcagagagggaccaggaggccgag---tcctgcagagcccatggcagggatgttgactttgactctgaaggaagtggcgcgggggcccggggaggatttcaggct-gaggactgccaggatcagatgtaagatggaaaaggatcgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16762385 146 - 229590362 gagggcagagagggaccaggaggctgag---tcctgcagaacccatggcagcgacattgactttgactctgaaggaagtagggtgggggccaggggaggattttaagcc-gaggactgccaggatcagatttaagatttaaaaggatcac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223524812 146 - 227556264 gagggcagagagggaccaggaggctgag---tcctgcagaacccatggcagcgacattgactttgactctgaaggaagtagggtgggggccaggggaggattttaagcc-gaggactgccaggatcagatttaagatttaaaaggatcac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16574655 146 - 220367699 GAGGGCAGAGAGGGACCAGGAGGCTGAG---TCCTGCAGAACCCATGGCAGGGACATTGACTTTGACTCTGAAGGAAGTAGGGTGGGGGCCAGGGGAGGATTTTAAGCC-GAGGACTGCCAGGATCAGATTTAAGATTTAAAAGGATCAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82373976 146 + 85787240 gagggcagagagggaccaggaggctgag---tcctacagaacccatggcagggacattgactttgactctgaaggaagtagggtgggggccaggggaggattttaagcc-gaggactgccaggatcagatttaagatttaaaaggatcac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14047754 146 - 49578535 gaggtcggagtgggaccagggcgccgac---tcctgcagagtccatggcaaggacattggctttgactctgaatggagtggggtgggggccaggggaggattttcagcc-gaggactgccaggatcagatgtaggagttaaaaggatcac i calJac3.chr19 C 0 C 0 s canFam3.chr7 36242290 141 + 80974532 GGGGGCAGGGTGGTGGCAGGatgcag-g---tcctgcag-gcccagtgcatagactatgac-ttggctctgagggaagtca---ggggagtctgggaggattttaaaccaaaggaatgtcagcatcagatttaagacttaaacagattcc i canFam3.chr7 I 22 C 0 e mm10.chr1 178668960 0 + 195471971 C e panTro4.chr1 224795817 1396 + 228333871 I a score=78978.000000 s hg38.chr1_KI270759v1_alt 51548 27 + 425601 cttgtctgttttcttgagagtggactc s ponAbe2.chr1 226156859 27 - 229942017 cttgtctgttttcttgagagtggactc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140046226 27 - 143122389 cttgactgctgtcttgagagtggactc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16762531 27 - 229590362 cttggctgctgccttgagagtggactc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223524958 27 - 227556264 ctcggctgctgccttgagagtggactc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16574801 27 - 220367699 CTCGGCTGCTGCCTTGAGAGTGGACTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82374122 27 + 85787240 gttggctgctgtcttgagagtggactc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14047900 27 - 49578535 cttggttgctgtcttgagagtggactc i calJac3.chr19 C 0 C 0 s mm10.chr1 178668960 27 + 195471971 cctggttaccactttgagaacagactc i mm10.chr1 C 0 C 0 s canFam3.chr7 36242431 25 + 80974532 cctggctgctctcctgag--tagactc i canFam3.chr7 C 0 I 6 e panTro4.chr1 224795817 1396 + 228333871 I a score=1840497.000000 s hg38.chr1_KI270759v1_alt 51575 561 + 425601 caggtggg-taagagtagaagTTATCATTACTATTCAA-ATtatggcacggtttctgccccctaggaattcactgtgatggtggagatagaacatgtacagct----taagtaaggaaatgtttgctaagtgctatgaatgactta-----gagaagtgctgtgtgagt-cagt--------gaagggagacatcccttctgggagtcagacttcgcggaagagCGGGGCCTTAGGATGAATGAACAAGACTTTGG-----------------------------Tttttttagtgt---------g---atacataattcaccatgcacatccagtgaatggtacacatttaaagcgtacactttgatatttttggacata--tgtatccacccatgacgctatccccacaattataatactgcacatatccatgacccccaaaagttttctcatggttGATGAGGGAGAGAGGGAGTTATCATCAGGGCAGGAACCAAAGTGAAGGTGCAGAGGCTGGGAAATGTAGGGGCTTCCATGAGACAGAGGGAGGCTGGTGCTGGTGCTCCTGGGGGAAGTGAGGGACGTGTGACAAGGTGGCCTGAAGAAAATTGTGTGGGGCCC s panTro4.chr1 224797213 561 + 228333871 CAGGGGGG-CAAGAGTAGAAGTTATCATTCCTATTCAA-ATtatggcacggtttctgccccctaggaatttactgtgatggtggagatagaacatgtacagct----taagtaaggaaatgcttgctaagtgctatgaatgactca-----gagaagtgctgtgcgagt-cagt--------gaagggagacatcccttctgggagtcagacttcgcggaagagCGGGGCCTTAGGATGAATGAACAAGACTTTGG-----------------------------Tttttttagtgt---------g---atacataattcaccatgcacatccagtgaatggtacacatttaaagcgtacactttgatatttttggacata--tgtatccacccatgatgctatccccacaattataatactgcacatatccatgaccctcaaaagttttctcatggttGATGAGGGAGAGAGGGAGTTATCATCAGGGCAGGAACCAAAGTGAAGGTGCAGAGGCTGGGAAATGTAGGGGCTTCCCTGAGACAGAGGGAGGCTGGTGCTGGTGCTCCTGGGGGAAGTGAGGGACGTGTGACAAGGTGGCCTGAAGAAAATTGTGTGGGGCCC i panTro4.chr1 I 1396 C 0 s ponAbe2.chr1 226156886 559 - 229942017 cagggggg--aagagtagaagTGATCATTACTATTCAA-ATtatggcacagtttctgcgccctaggaatttaccgtgatggtggagatagaacatgtacagct----taagtaaggaaatgtttgctaagtgctacgaatgactca-----gagaagtgttgtgcgagt-cagt--------gaagggagacatcccttctgggagtcagacttcgcagaagagctgggccttaggatggatgaacaagacttTGG------------------------------TTTTTTAGTAT---------G---ATACATAATTCACCattcacatccagtgaatggtacacatttaaagcgtacactttgatatttttggacata--tgtatccacccatgacgctatccccacaattataataccgcacatatccatgacccccaaaagttttctcgtgtttGGTGAGGGAGAGAGGGAGTTATCATCAGGGCAGGAACCGAAGTGAAGGTACAGAGGCTGGGAAATGTAGGGGCTTCCATGGGACAGAGGGAGACTGGTGTGGGCGCTCCTGGGGGAAGGGAGGGACGTGTGACAAGGTGGCCTGAAGAAAATTCTGTGGGGCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140046253 559 - 143122389 cagggggc--aagagtacaagTTATCATTACTATTCAC-ATtatggcacagtttctgccccctaggaatttaccgtgatggtggagatagaacacgtacagct----taagtaaggaaatgtttgctaagtgctacgaatgactca-----gagaagtgctgtgcgagt-cagt--------gaagggagacat-ccttctgcgagtcagacctcgcggaagagctggcccttaggatgaatgaacgaGACTTTGG-----------------------------TTTTTTTAGTGT---------G---ATACATAATTCACCattcacgtccagtgaatggtacacatttaaagcgtacactttgatatttttggacata--tgtatccacccatgacgctctccccacagttacaatactgcatgtatccattacccccaaaagttttctcgtgtttGATGAGGGAGAGAGGGAGTTATCATCAGGGCAGGAACCAAAGTGAAGGTGCAGAGGCTGGGAAATGTAGGGGCTTCCATGGGACAGAGGGAGGCTGGTGCTGGTGCTCCTGGGGGAAGTGAGGGACGTGTGACAAGGTGGCCTGAAGAAAATTGTGTGGGGCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16762558 568 - 229590362 cagggggg-caagagtagaagTTATCGTGACTATTCAA-ATtatggcacagtttctgccccctaggaatttaccgtgatggtggagatagaacatgtaCAGCT----CTGGTAAGGAAATGTTTGCTGAGTGCCGTGAGTGACGCA-----GAGAAGTACCGTGAGAGT-CAGCGAAGCAGCGAAGGGAGACATCTCTTCTCGGAGTCAGACTTCACGGAAGAGCTGGGCCTTAGGATGGACGAACAAGACTTTGG------------------------------TTTTTTAGTGT---------G---GTACATAATTCACCattcacatccagtgaacggtacacatttaaagcgtacactttggtatttttggacata--tgtgtccacctatgatgctgtccccaccattacaatactgcacgtatccattacccccaaaagttttctcgtgcttGATGAGGGAGAGAGGGAGTTAACATCGGGGCAGGAGCCAACGCGAAGGTGCAGAGGCTGGGAAATGTAGGGGCTTCCATGGGACAGAGGGAGGCTGGTGCGGGCGCTCCTGGGGGAAGTGAGGGACGTGTGACAAGGTGGCCTGAAGAAAATTGTGTAGGGCCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223524985 568 - 227556264 cagggggg-caagagtagaagTTATCGTGACTATTCAA-ATTATGGCACAGTTTCTGCCCCCTAGGAATTTACCGTGATGGTGGAGATAGAACATGTACAGCT----CTGGTAAGGAAATGTTTGCTGAGTGCCGTGAGTGACGCA-----GAGAAGTACCGTGAGAGT-CAGCGAAGCAGCGAAGGGAGACATCTCTTCTCGGAGTCAGACTTCACGGAAGAGCTGGGCCTTAGGATGGACGAACAAGACTTTGG------------------------------TTTTTTAGTGT---------G---GTACATAATTCACCattcacatccagtgaacggtacacatttaaagcgtacactttggtatttttggacata--tgtgtccacctatgatgctgtccccaccattacaatactgcacgtatccattacccccaaaagttttctcgtgcttGATGAGGGAGAGAGGGAGTTAACATCAGGGCAGGAGCCAACGCGAAGGTGCAGAGGCTGGGAAATGTAGGGGCTTCCATGGGACAGAGGGAGGCTGGTGCGGGCGCTCCTGGGGGAAGTGAGGGACGTGTGACAAGGCGGCCTGAAGAAAATTGTGTAGGGCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16574828 568 - 220367699 CAGGGGGG-CAAGAGTAGAAGTTATCATGACTATTCAA-ATTATGGCACAGTTTCTGCCCCCTAGGAATTTACCGTGATGGTGGAGATAGAACATGTACAGCT----CTAGTAaggaaatgtttgctgagtgCCATGAATGACTCA-----GAGAAGTACCGCGAGAGT-CAGCGAAGCAGCGAAGGGAGACATCCTTTCTCGGAGTCAGACTTCACGGAAGAGCTGGGCCTTAGGATGAACGAACAAGACTTTGt------------------------------ttttttAGTGT---------G---GTACATAATTCACCATTCACATCCAGTGAACGGTACACATTTAAAGCGTACACTTCGGTATTTTTGGACATA--TGTGTCCACCCATGATGCTATCCCCACAATTACAATACTGCACGTATCCATTACCCCCGAAAGTTTTCTCGTGCTtgatgagggagagagggagttAACATCAGGGCAGGAGCCAACGCGAAGGtgcagaggctgggaaatgtagggGCTTCCATGGGACAGAGGGAGGCTGGTGCGGGCGCTCCTGGCGGAAGTGAGGGACGTGTGACAAGGTGGCCTGAAGAAAATTGTGTAGGGCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82374149 568 + 85787240 cagggggg-caagagtagaagTTATCATGACTATGCAA-ATTACGGCACAGTTTCTGCCCCCTCGGAATTTACCGTGATGGTGGAGATAGAACACGTACAGCT----CTAGTGAGGAAATGTTTGCTGCGTGCCATGAATGACTCA-----GAGAAGTACTATGAGAGT-CAGTGAAGCAGCGAAGGGAGACATCTCTTCTCGAAGTCAGACTTCACGGAAGAGCTGGGCCTTAGGATGAACGAACAAGACTTTGG------------------------------TTTTTTAGTGT---------G---GTACATAATTCACCattcacatccggtgaacggtacacatttaaagcatacactttggtatttttggacata--tgtgtccacccatgatgctatgcccacaattacaatactgcacgtatccattacccctgaaagttttctcctgcttGATGAGGGAGAGAGGGAGTTAACATCAGGGCAGGAACCAACGCGAAGGTGCAGAGGCTGGGAAATGTAGGGGCTTCCATGGGACAGAGGGAGGCTGGTGCGGGCGCTCCTGGGGGAAGTGAGGGATGTGTGACAGGGTGGCCTGAAGAAAATTGTGTAGGGCCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14047927 566 - 49578535 cagggggg-caaaagtagaCGTTATCATTACTATTCga-atcatggcatggtttctgccccctaggaatttaccgtgatggtggagattgaacatgtacagca----ttaataaggaagtgtttgctgagtgctatgaatgactcagacctgagaggttctgtgcaactccagt--------gaagggagacattcctcctgggagtcagacttcacggaagagctgggcctttggatgaatgaacaagatttTGT------------------------------TTTTTTAGTGT---------G---GCATAGAATTCACCattcacctgcagagagtggtacgcatttaaagtgtacactttgatatttttggacata--tgtatacacccatgatgctgtccccacagttacaacactgcacatactcattacccccaaaagtcttctcatggttGATGAGGGAGAGCGGACGTTATCATCAGGGCGGGAACCAAGGTGAAGGTGCAGAGGCAGGGAAATGCAAGGGGCTCTGTGGGACAGAGGAAGGCTGGTGTTGGCGCCCCTGGGGGTTGTGAGGGACGTGTGACAAGGTGGCCTGAAGAAAACTGTGTGGGGTTC i calJac3.chr19 C 0 I 53 s mm10.chr1 178668987 403 + 195471971 caggggggccaagactagaggTTGCCACTGAGATGAAACCTTATGGCATGCTTTCTGCCTCCTGGAAACTGGCTGTGATTGTGGAGATAGAACACGCATCTCT----CTCATAAGGAAGTATTTGCTGAGTCCC----ATGACTCA-----GAA----------------CAGA---------------------------------CTGAC-----------GCTGTGGCCTAGCAAGAATGAGCgtgtgtgtgt-----------------------------gtatgtgtgtgt---------gtgtgtgtgtgtgtgtgtgtgtCCGTCCA---------------TTAAAATGTACACTTTGACACATTTGGACACAAGTGCACACACCCACAAAGGTATCCTCA--GTGACAATAATGAGCAAACCTTTAACCTCCAAAAGTATACTATGGGTTCAAGTGGAGGGAAGAAA--TGTTACTAGGGCGGGGACCTCAGTAGAGTCATAGAG--------ATG------------------------------------------------------------GTGTGTCAGG-------GAAGA---------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36242462 550 + 80974532 cagggagc--aagagtagaaCTTATAATTACTATTGAA-ATTATGGCATGGTTTCTGCCCCTTTGGAATTTGCCATGATTGTGGAGATAGAACATGTACAACTGTAAGTAACAAGGAAATGTTTGCTAAGTGATATGAATAACTCA-----GAGAAGTGCGTTGGACGT-CAGC-------AGGAGGAAGACATCCCT-CTGAGAGTCAGATTTCATGCCCCAGCTGGGCCTTACGATGGATGAACAGAGttttttgtttattttttgtttatttgtttttttgttttgttttgtgtagcttcctgg---gtatataattggct-------ttcagtaaaccatacacatctaaactgtacaatttgatacatttggccaga--ggtatgcacccacgaga------cctctgccacaatagtgaacatctccatcaccct---gagttttctcgtggtttACGAGGCAGGGTGAGAATTATCATCAGGGCAGGAACTTGAGGAAAAGCACAGAGGCAGGGAAATGTAGGGGCTTCTCTG-GACAGAAAGAAG-----------------------------------GCCACCTGATAGCTTGAAGCAAATTACATGGGGCCA i canFam3.chr7 I 6 C 0 a score=137682.000000 s hg38.chr1_KI270759v1_alt 52136 66 + 425601 AAAACACTG------------------GGTCACAGGGGAATGGGGCAAGTACTTAAATTT-TTGTAGGACATGGTCAAATGA---TGT s panTro4.chr1 224797774 66 + 228333871 AAAACACTG------------------GGTCACAGGGGAATGAGGCAAGTACTTAAATTT-TTGTAGGACATGGTCAAATGA---TGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226157445 67 - 229942017 AAAACACTG------------------GGTCACAGGGGAACGAGGCAAGTACTTAAATTTGTTGTAGGACATGGTCAAATGA---TTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140046812 85 - 143122389 AAAACACTGGGCCACAAGGGTTAGTTAGGTCACAGGGGAACGAGGCAAGTACTTAAATTTGTTGTAGGACATGGTCAGATGA---CTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16763126 71 - 229590362 CAAGGGTTA--------------GTTAGGTCACAGGGGAATGATGCAAGTACTTAAATTTGTTGTAGGACACGGTCAAATGA---TTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223525553 71 - 227556264 CAAGGGTTA--------------GTTAGGTCACAGGGGAATGATGCAAGTACTTAAATTTGTTGTAGGACACGGTCAAATGA---TTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16575396 71 - 220367699 CAAGGGTTA--------------GTTAGGTCACAGGGGAATGATGCAAGTACTTAAATTTGTTGTAGGACACGGTCAAATGA---CTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82374717 71 + 85787240 CAAGGGTTA--------------GTTAGGTCACAGGGGAATGATACAAGTACTTAAATTTGTTGTAGGACACGGTCAAATGA---TTT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178669390 39 + 195471971 --------------------------GGGTTACAAGG-------------ACTT-------TTGTGGGACAAAGGGGAGCCA---TGC i mm10.chr1 C 0 I 120 s canFam3.chr7 36243012 78 + 80974532 GAAACATTG--------GCAAGGGTTAGGTCACAGGGGACTGGCAGAGGTTTTTAAG--TGTTGTAGGGTATGGCAGAAATAGAGTTT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14048493 53 - 49578535 I a score=63947.000000 s hg38.chr1_KI270759v1_alt 52202 22 + 425601 ATTTGTTAAAATTCCATCtttt s panTro4.chr1 224797840 22 + 228333871 ATTTGTTAAAATTCCATCtttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226157512 22 - 229942017 ATTTGTTAAAATTCCATCtttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140046897 22 - 143122389 ATTTGTTAAGATTCCATCtttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16763197 22 - 229590362 ATTTGTTAACATTCCATCtttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223525624 22 - 227556264 ATTTGTTAACATTCCATCtttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16575467 22 - 220367699 ATttgttaacatttcatttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82374788 22 + 85787240 ATTTGTTAACATTCCATCtttt i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36243090 22 + 80974532 GTCTGTTAAAATTTCATCTTTT i canFam3.chr7 C 0 I 44 e mm10.chr1 178669429 120 + 195471971 I e calJac3.chr19 14048493 53 - 49578535 I a score=520249.000000 s hg38.chr1_KI270759v1_alt 52224 219 + 425601 ttcttttttgtgttgagacatggtctcgctctgctgcccagattagatggcagtggcgtcatcatagctcactgcatcctcagcctcctgggctcaagggatcctcccacctcagcctcctgagtagctgggactaaaggcatgcaccaccgcacctggctaatttttgta-ttttttgt--agttgggatttcaccatgttgcccaggctggtctcgaact s panTro4.chr1 224797862 219 + 228333871 ttcttttttgtgttgagacatggtctcgctctgctgcccaggttagatggcagtggtgtcatcatagctcactgcatcctcagcctcctgggctcaagggatcctcccacctcagcctcctgagtagctgggactaaaggcatgcaccaccgcacctggctaatttttgta-ttttttgt--agttgggatttcaccatgttgcccaggctggtctcgaact i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226157534 221 - 229942017 ttcttttttatgttgagacatggtcttgctctgttgcccaggttagatggcagtggcgccatcgtagctcactgcatcctcagcctcctgggctcaagggatcctcccacctcagtctcctgagtagctgggactaaaggcatgcaccaccacacctggctaatttttgta-ttttttgtagagttgggatttcaccatgttgcccaggctggtctcgaact i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140046919 222 - 143122389 ttcttttttctgttgagacatggtctcgctctgttgcccaggttagatggcagtggcgtcatcatagctcactgcatcctctgcctcccgggctcaagggatcctcccatctcagcctcctgagtagctgggactaaaggcatgcaccaccacacctggctaatttttgtatttttttgtagagttgggattccaccatgttgcccaggctggtctcgaact i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16763219 220 - 229590362 ttgttttttgtgttgagacatgctctcactctgttgcccaggctagacggcagaggtgccatcgtagctcgctgcatcctcagcctcctgggctcaagggatcctcccacctcagcctcctgagtagccgggactaaaggcatgcaccaccacacctggctcatttttgta-ttttttgtagagatggga-ttcaccatgttgcccaggctggtctcaaact i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223525646 220 - 227556264 ttgttttttgtgttgagacatgctctcactctgttgcccaggctagacggcagaggtgccatcgtagctcgctgcatcctcagcctcctgggctcaagggatcctcccacctcagcctcctgagtagccgggactaaaggcatgcaccaccacacctggctcatttttgta-ttttttgtagagatggga-ttcaccatgttgcccaggctggtctcaaact i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16575489 220 - 220367699 ttgttttttgtgttgagacatgctctcactctgttgcccaggcaagacGGCAGAGGCGCCATCGTAGCTCGctgcatcctcagcctcctgggctcaagggatcctcccacctcagcctcctgagtagctgggactaaaggcatgcaccaccacacctggctcatttttgta-ttttttgtagaaatggga-ttcaccatgttgcccaggctggtctcaaact i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82374810 221 + 85787240 ttgttttttgtgttaagacatgctctcactctgttgcccaggctagacagcagaggtgccatcgtagctcgctgcatcctcagcctcctgggatcaagggatcctcccacctcagcctcctgagtagctgggactaaaggcatgcaccaccacacctggctcatttttgta-ttttttgtagagatgggatttcaccatgttgcccaggctggtctcaaact i chlSab2.chr25 C 0 C 0 e mm10.chr1 178669429 120 + 195471971 I e canFam3.chr7 36243112 44 + 80974532 I e calJac3.chr19 14048493 53 - 49578535 I a score=380806.000000 s hg38.chr1_KI270759v1_alt 52443 152 + 425601 tca----------gatctgcccacctcagtttcccaaagtgtggggattacaggcgtgagccaccataccctgccAAAATTTTACCTTTTAAAAACAATGGCAACACCACCAAATTTTAGGTATTTAATCTTTTTGTAGTAAGTTTAAGAAAACACAGCCAA s panTro4.chr1 224798081 152 + 228333871 tca----------gatctgcccacctcagtttcccaaagtgtggggattacaggcgtgagccaccacaccctgccAACATTTTACTTTTTAAAAACAATGGCAACACCACCAAATTTTAGGTATTTAATCTTTTTGTAGTAAGTTTAAGAAAACACAGCCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226157755 152 - 229942017 tca----------gatccgcccacctcagtttcccaaagtacggggattacaggagtgagccaccacacccggccAAAATTTTACCTGTTAAAAACAATGGCAACACCACCAAATTTTAGGTATTTAATCTTTTTGTAGTAAGTTTAAGAAAACACAGCCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140047141 152 - 143122389 tca----------gatctgcccaccttagtttcccaaagtgcggggattactggagtgagccaccacgcccggccAAAATTTTACCTTTTAAAAACAATGGCAACCCCACCAAATTTTAGGTATTTAATCTTTTTGTAGTAAGTTTAAGAAAACACAGCCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16763439 162 - 229590362 tcagagcttaagggatctgcccacctcagtttcccaaagtgcagggattacaggagtgagccaccactcccggccGAAATTTTACCTTTTAAAAACAATGGCAACACCACCAAATTTTAGATATTTAATCTTTTTGTAGTAAGTTTAAGAAAACACAGCCAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223525866 162 - 227556264 tcagagcttaagggatctgcccacctcagtttcccaaagtgcagggattacaggagtgagccaccactcccggccGAAATTTTACCTTTTAAAAACAATGGCAACACCACCAAATTTTAGATATTTAATCTTTTTGTAGTAAGTTTAAGAAAACACAGCCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16575709 162 - 220367699 tcagagctcaagggatctgcccacctcagtttcccaaagtgcagggattacaggagtgagccatcactcCCGGCCAAAATTTTACCTTTTGAAAACAATGGCAACACCACcaaattttagatatttaatcTTTTTGTAGTAAGTTTAAGAAAACACAGCcaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82375031 162 + 85787240 tcagagctcaagggatctgcccacctcagtttcccaaagtgcagggattataggagtgagccaccactcccggccAAAATTTTACCTTTTCAAAACAATGGCAACACCACCAAATTTTAGGTATTTAATCTTTTTGTAGTAAGTTTAAGAAAACACAGCCAA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178669549 119 + 195471971 TCA----------GATCTGC------------TCTGGAATGTGGTCAGAGCAGAA--------------CTTTTTAGCATTTTATTCTTTAAA-------TCCCCATAACTACATTTTAGGAGTTTTCCATTTTTGTAGTAAATCCAGGAAAATGTAGCCAA i mm10.chr1 I 120 C 0 e canFam3.chr7 36243112 44 + 80974532 I e calJac3.chr19 14048493 53 - 49578535 I a score=4500.000000 s hg38.chr1_KI270759v1_alt 52595 1 + 425601 g s panTro4.chr1 224798233 1 + 228333871 g i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226157907 1 - 229942017 g i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140047293 1 - 143122389 g i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16763601 1 - 229590362 g i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223526028 1 - 227556264 g i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16575871 1 - 220367699 g i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82375193 1 + 85787240 g i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14048546 1 - 49578535 g i calJac3.chr19 I 53 C 0 s mm10.chr1 178669668 1 + 195471971 G i mm10.chr1 C 0 I 694 e canFam3.chr7 36243112 44 + 80974532 I a score=589123.000000 s hg38.chr1_KI270759v1_alt 52596 217 + 425601 ggcggatcat--gaggtcaggaaatcgagaccatcctggctagcagagtgaaaccctgtctctaataaaaatacaaaatattagccaggcgtggtgatgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggaggccgagcttgcagtgagccgagatcgcgccactgtactccagcctgggctacagagtgag s panTro4.chr1 224798234 217 + 228333871 ggcggatcat--gaggtcaggaaatcgagaccaccctggctagcagagtgaaaccctgtctctaataaaaatacaaaatattagccaggcgtggtgatcggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacctgggtggccgagcttgcagtgagccgagatcgcgccactgtactccagcctgggctacagagcgag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226157908 217 - 229942017 ggcggatcat--gaggtcaggaaatggagaccatcctggctagcagagtgaaatcctgtctctagtaaaaatataaaatattagccaggcgtggtgatgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatggtgtgaacctgggaggccgagcttgcagtgagccgagatcgcgccactgcactctagcctgggcgacagagcgag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140047294 217 - 143122389 ggcggatcac--gaggtcagggaatcgagaccgtcctggctagcagagtgaaaccctgtctctaataaaaatacaaaaaattagccgggcatggtgatgggtgcctgtagtcccagctactcgggaggccgaggcaggagaatggtgtgaacctgggaggcagagcttgcagtgagccgagattgcgccactgtactccagcctgggctacagagcgag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16763602 217 - 229590362 ggcggatcac--gaggtcaggtgattgagaccatcctggttagcacagtgaaaccctgtctccgctaaaaatacaaaaaatcagctgggcttggtggcgggtgcctggagtcccagctgcttgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagctgagatccggccactgcactccagcctgggtgacagagcgag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223526029 217 - 227556264 ggcggatcac--gaggtcaggtgattgagaccatcctggttagcacagtgaaaccctgtctccgataaaaatacaaaaaatcagctgggcttggtggcgggtgcctgtagtcccagctgcttgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcactccattgcactccagcctgggtgacagagcgag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16575872 217 - 220367699 ggtggatcac--gaggtcaggtgattgagaccatcctggttagcacagtgaaaccctgtctctgataaaaatacaaaaaatcagctgggcttggtggcgggtgcctgtagtcccagctgcttgggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgtgccgagatcactccattgcactccagcctgggtgacagagcgag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82375194 216 + 85787240 ggcggatcac--aaattcaggtgattgagaccatcctggttagcacagtgaaaccctgtctccaataaaaatacaaaaaatcagccgggcgtggtggt-ggcgcctgtagtcccagctgcttgggaggctgaggcaggagaatgacgggaacccgggagggggagcttgcagtgagccgagatcactccattgcactccagcctgcgtgacagagcgag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14048547 217 - 49578535 ggtggatcacctgaagtcaggagtttaagttcagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaa-atcagctgagcgtggtggcaggtgtctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagctgagatcgtgttactgcactccagcatg-gcgacagagcaag i calJac3.chr19 C 0 C 0 e mm10.chr1 178669669 694 + 195471971 I e canFam3.chr7 36243112 44 + 80974532 I a score=1454611.000000 s hg38.chr1_KI270759v1_alt 52813 485 + 425601 actccgtctc-aaaacaaaacaaaacaaaac---aaaacaGCCAAGTACATTTATGCAGCATTTCATGAATATGAAGTCAATTAAAAGAAAAAGAAACATTAAGCAATTTTATAATTAGATAATTAACAGAATCCTTGATAGCCTTATACTAATACAACTACTTGCAGATTG---AAAATAATTCCATTTGCTGCCTGCTGGCACATTA-----AAGCCTACATGTAAAAAATACATCAAGTCTAGATGGGCTTCAGTCATTTGAAAGTAATATTTTAGTGCATTCTAGTATAATCTTGATTAGTGCTT-ACATGCGTATAGTTCAGCACTTTA-TTTTGTGTCATGTTGAACATGAAC-TTTAAAGTTAAGGGAAACATTT---TAAGTACGTAGTAGGAATCTACTTTCCCATCTTAAGCTCTGAATCTATTTGTGAAGGGATCCTATTTCCCAACAGCCAAGGGATATACTGGAGAACAA-GATTTTCAGGGTTGAAGATA s panTro4.chr1 224798451 480 + 228333871 actctgtctc-aaaacaaaacaaaacaaaac---a-----GCCAAGTACATTTATGCAGTATTTCATGCATATGAAATCAATTAAAAGAAAAAGAAACATTAAGCAATTTTATAATTAGATAATTAACAGAATCCTTGATAGCCTTATACTAATACAACTACTTGCAGATTG---AAAATAATTCCATTTGCTGCCTGCTGGCGCATTA-----AAGCCTACATGTAAAAAATACATGTAGTCTAGATGGGCTTCAGTCCTTTAAAAGTAATATTTTAGTGCATTCTACTATAATCTTGACTAGTGCTT-ACATGCGTATAGTTCAGCACTTTA-TTTTGTGTCATGTTGAACATGAAC-TTTAAAGTTAAGGGAAACATTT---TAAGTACGTAGTAGGAATCTACTTTCCCATCTTAAGCTCTGAATCTATTTGTGAAGGGATCCTGTTTCCCAACAGCCAAGGGATATATTGGAGAACAA-GATTTTCAGGGTTGAAGATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226158125 481 - 229942017 actccgtctc-aaaacaaaacaaaacaaaac---a-----GCCAAGTACATTTATGCAGTATTTCATGCATATGAAATCAATTAAAAGAAAAAGAAACATTAAGCAATTTTATAATTAGATAATTAACAGAATCCTTGATAGCCTTATACTAATACAACTACTTGCAGATTG---AAAATAATTCCATTTGCTGCCTGCTGGCGCATTA-----AAGCCTATATGTAAAAAATACATCTAGTCTAGATAGGCTTTAGTAATTTAAAAGTAATATTTTAGTGCATTCTACTGTAATCTTGCTTAGTGCGT-GTATGTGTGTAGTCCAGCACTTTA-TTTTGTGTCATGTTGAACATGAACTTTTAAAGTTAAGGGAAACATTT---TAAGTACGTAGTAGGAATCTACTTCCCCATCTTAAGCTCTGAATCTACTCGTGAAGGGATCGTATTTCCCCACAGCCAAGGGATAGACTGGAGAACAA-GATTTTCAGGGTTGAAGGTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140047511 479 - 143122389 actccacctc-agaacaaaacaaaacaaaGC---A-----GCCAA-TACATTTATGCAGTATTTCATGCATATGAAATCAATTAAAAGAAAAAGAAACATTAAGCAATTTTATAATTAGATAATTAACAGAATCCTTGATAGGCTTATACTAATACAACTACTTGCAGATTG---AAAATAATTCCATTTGCTGCCTGCTGGCGCATTA-----AAGCCTATATGTAAAAAATACATCTAGTCTAGATAGGCTTTAGTAATTTAAAAGTAATATTTTAGTGCATTCTACTATAATCTTGATTAGTGCTT-ATATGTGTATAGTCCAGCACTTTA-TTTTGTGTCATGTTGAACATGAAC-TCTAAAGTTAAGGGAAGCATTT---TAAGTATGTAGTAGGAATCTACTTTCCCATCTTAAGCTCTGAATCTATTTGTGAAGGGGTCCTATTTCCCAACAGCCAAGGGATAGACTGGAGAACAA-GATTTTCAGGGTTGAAGATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16763819 482 - 229590362 actctgtctcaaaaacaaaacaaaacaagaa---aaTACAGCCAAGTACATTTATGCAGTTTTTCATGCATATGAAATCAATTAAAAGAAAAAGAAACAGTAAGCAATTTCATAATTGCATAATTAACAGAATCCTTAATAGCCTTAGACTAATTCAACTACTTGCAGATTG---AAAATAATTCCATTTGCTGCCTGCTGGTGCATTA-----AAGCCTATATGTAAAAAATACATCTAGTCTAGATAGGCTTTAGGAATTTAGAAGTAATATTTTAGTGCATTCTACTATAATCTTGATTAGTGCTT-ATATGTGTATAGTTCAGCACTTTATTTTTGTGTCATGTTGAGCATGAAC-T------TTAAGGGAAACATTT---TAAGTTTGTAGTAAGAACCTACTTTCCCATCGTAAGCTCTGAATCTATTTGTGAAGGGATCCTATTTCCCCACAGCCAAGGGAGAGACTGGAGAACAAGGATTTTCAGGGTTGAAGATA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223526246 482 - 227556264 actctgtctcaaaaacaaaacaaaacaagaa---aaTACAGCCAAGTACATTTATGCAGTATTTCATGCATATGAAATCAATTAAAAGAAAAAGAAACAGTAAGCAATTTCATAATTACATAATTAACAGAATCCTTAATAGCCTTAGACTAATTCAACTACTTGCAGATTG---AAAATAATTCCATTTGCTGCCTGCTGGCGCATTA-----AAGCCTATATGTAAAAAATACATCTAGTCTAGATAGGCTTTAGGAATTTAGAAGTAATATTTTAGTGCATTCTACTATAATCTTGATTAGTGCTT-ATATGTGTATAGTTCAGCACTTTATTTTTGTGTCATGTTGAGCATGAAC-T------TTAAGGGAAACATTT---TAAGTTTGTAGTAAGAACCTACTTTCCCATCGTAAGCTCTGAATCTATTTGTGAAGGGATCCTATTTCCCCACAGCCAAGGGAGAGACTGGAGAACAAGGATTTTCAGGGTTGAAGATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16576089 488 - 220367699 actctgtctcaaaaacaaaacaaaacaagaa---aacacagtCAAGTACATTTATGTAGTATTTCATGCATATGAAATcaattacaagaaaaagaaacattaagcaatttcataattacataattaacaGAATCCTTAATAGCCTTAGACTAATTCAACTACTTGCAGattg---aaaataattccatttgctGCCTGCTGGCGCATTA-----AAGCCTATATGTACAAAATACATCTAGTCTAGATAGGCTTTAggaatttaaaagtaatattttagtgCATTCTACTAGAATCCTGGTTAGTGCTT-ATATGTGTATAGTTCAGCACTTTATTTTTGTGTCATGTTgaacatgaac-tttaaagttaAGGGAAACATTT---TAAGTTTGTAGTAAGAACCTACTTTCCCATCGTAAGCTCTGAATCTATTTGTGAAAGgatcctatttccccacagccaAGGGAGAGACTGGAGAACAAGGATTTTCAGGGTTGAAGATA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82375410 488 + 85787240 actctgtctcaaaaacaaaacaaaacaagaa---aaCACAGCCAAGTACATTTATGCAGTATTTCATGCATATGAAATCAATTAAAAGAAAAAGAAACATTAAGCAATTTCATAATTACATAATTAACAGAATCCTTAATAGCCTTAGACTAATTCAACTACTTGCAGATTG---AAAATAATTCCGTTTGCTGCCTGCTGGCGCATTA-----AAGCCTATATGTACAAAATACATCTAGTCTAGATAGGCTTTAGGAATTTAAAAGTAATATTTTAGTGCATTCTACTATAATCTTGATTAGTGCTT-ATATGTGTATAGTTCAGCACTTTATTTTTGTGTCATGTTGAGCATGAAC-TTTAAAGTTAAGGGAAACATTT---TAAGTTTGTAGTAAGAACCTACTTTCCCATTGTAAGCTCTGAATCTATTTGTGAAAGGATCCTATTTCCCCACAGCCAAGGGAGAGACTGGAGAACAAGGATTTTCAGGGTTGAAGATA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14048764 415 - 49578535 agtccacctc-aaaaaaaa----------------------------------------------------------------aaaagagaaagaaaCATTAAGCAATTTCATAATTAGATAATTAACAGAATCCTTAATAGCCTTCTACTAACACAAGTACTTGC-GACTG---AAAATAACTCCATTTGCTGCCTGTTGGAGCATTA-----AAGCCTAAATGTAACACA-GCATCTAGTGCAGCTGGGCTTTGATCATTTGAAGGTAATATTGTAGCGCATTCTCCTAGAATGTTGATTAGTGCTG-ATATGTGTATAGTTCAACACTCTATTTTTGTGTCATGTT--ACATGAAC-TTTAAAGTTACAGGAAGCATTT---TAAGTGCGTAGCAGGAATCTGTGTTCCCATCTTAAACTCTGA--CTATTTGTGAA-GGCTCCTATTTCCCCACAGCCAAGGGATAGACTGG---ACAA-GACGTTCAGGGTTGAAGGTA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36243156 484 + 80974532 ACTGAGTCCa-aaaaaaaaaaaaaaaaaaaCCCAAAAAGAACCAAGTACATTTCTGTAGCATCTCATGTATACAAAGTCCATTAAAGGAAAAAGAAGCATCAGGCAATTTCATAATTAGATAATTAACAGACTCCTTAACAGCATTAAACTAATACAACTACTTAGAGATTGTAAAAAACAATTCTA-GTGCCACCTGATGGTACATTATAGCCCAGCCCACACATAAAGAATACATCTACTCCAGATGGACTTTAATAATTCAAAGGTAGAATTTTAGTGTGCCATACTAGAATCTTTATTAGTGCTTCATATTTGTGAAGTCTCACACTTTCTTTTTGGGTCAGGTTGAAAGAGAAC-TTCGCAGTTCACGGCATCACTTAGGTAGGTGTTCAGCGGACATCTACTCCCTGGTCCTAAGGTCTTGATCTATTTGTGAACAGATTGTCTTCCCC------------AGGGCCTGG----CAA-GACTTTTGGGTTGGAAGGTA i canFam3.chr7 I 44 I 6 e mm10.chr1 178669669 694 + 195471971 I a score=971857.000000 s hg38.chr1_KI270759v1_alt 53298 346 + 425601 CGCTGATGTGAAATCAGGtttctctc--tctt--------t------ttttttttcttgagatggagtcacgctctgttgctcaggctggagtgcagtggcgcagtctcggctcactgcagcctccgcctcctgtgttccagtgattctcctgcctcagcctcccgggtagctgggattacaggcacgcaccaccacacctggttaatttttgtatttttagtagagacggggtttcactatgttggccaggctggtctcgaactcctgacctcaagtgatcctcctgcctcggcctcccaaagggctagggttgcaagagtgagccaccgcgtccaggccAGGTTTCTCTTTCTACATCTT s panTro4.chr1 224798931 346 + 228333871 CGCTGATGTGAAATCAGGtttctctc--tctc--------t------ttttttttcttgagatggagtcacgctctgttgctcaggctggagtgcagtggcgcagtctcggctcactgcagcctccgcctcctgtgttccagtgattctcctgcctcagcctcccgggtagctgggattacaggcacgcaccaccacacctggttaatttttgtatttttagtagagacggggtttcactatgttggccaggctggtctcgaactcctgacctcaagtgatcctcctgcctcggcctcccaaagggctagggttgcaagagtgagccaccgcgtccggGCCAGGTTTCTCTTTCTACATCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226158606 354 - 229942017 CGCTGATGTGAAATCAGGTTTCTCTC--TCTCTCTCttttt------ttttttttcttgagatggagtcacactctgttgctcaggctggagtgcagtggcgcagtctcagctcactgcagcctccgcctcctgcgttccagtgattctcctgcctcaacctcccgggtagctgggattacatgcacacaccaccacacctggttaatttttgtatttttagtagagacagggtttcactatgttggccaggctggtctcgaactcctgacctcaagtgatcctcctgcctcggcctcccaaaaggctaagggtacaagagtgagccactgcgtctggccCAGGTTTCTCTTTCTACATCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140047990 344 - 143122389 CGCTGATGTGAAATCAGGtttctctc--tc----------t------ttttttttcttgagatggagtcacactctgttgctcaggctggagtgcagtggcgcagtcttggctcactgcagcctccgccttctgcattccagtgattctcctgcctcagcttcccgggtagctgggattacatgcatgcaccaccacgcctggttaatttttgtatttttagtagagacggggtttcgctatgttggccaggctggtctcaaactcctgacctcaagtgatcctcctgcctcagcctcccaaagggctaaggttacaagagtgagccaccgtgtctggccCAGGTTTCTCTTTCTACATTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16764301 333 - 229590362 CGCTGATGTGAAATCAGG----------tttc--------t------ctttttttcttgagac--agtcacgctctgttgctcaggctggaatgcagtggcgcagtctcggctcactgcagcctctgcctcctgcgttttagtgattctcctgcctcagcctcctgggtagctgggattacatgcacgcaccaccatgcctggctaatttttgtatttttagtagaga--aggtttcactatgttggccaggctggtctcgaacccctgacctcaagtgatcctcctg-ctcggcctcccaaagggcgagggttacaagagtgagtcaccgcatctggccTAGGTTTCTCTTTCTACATCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223526728 333 - 227556264 CGCTGATGTGAAATCAGG----------tttc--------t------ctttttttcttgagac--agtcacgctctgttgctcaggctggaatgcagtggcgcagtctcggctcactgcagcctctgcctcctgcgtttcagcgattctcctgcctcagcctcctgggtagctgggattacatgcacgcaccaccatgcctggctaatttttgtatttttagtagaga--aggtttcactatgttggccaggctggtctcgaacccctgacctcaagtgatcctcctg-ctcggcctcccaaagggcgagggttacaagagtgagtcaccgcatccggccTAGGTTTCTCTTTCTACATCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16576577 343 - 220367699 CGCTGATGTGAAAtcaggtttctctttttttc--------t------ctttttttcttgagac--agtcacgctctgttgctcaggctggagtgcagtggcgcagtctcggctcactgcagcctctgcctcctgcgtttcagcgattctcctgcctcaacctcctgggtagctgggattacttgcacgcaccaccatgcctggctaatttttgtatttttagtagaga--aggttttactatgttggccaggctggtctcgaacccctgacctcaagtgatcctcctg-ctcggcctcccaaagggtgagggttacaagagtgagccaccgcatccggcctagGTTTCTCTTTCTACATCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82375898 343 + 85787240 CGCTGATGTGAAATCAGGtttctctttttttc--------t------ctttttttcttgagac--agtcacgctctgttgctcaggctggagtgcagtggtgcagtctcagctcactgcagcctctgcctcctgcgtttcagcgattctcctgcctcagcctcctgggtagctgggattacatgcacgcaccaccacgcctggctaatttttgtatttttagtagaga--aggtttcactatgttggccaggctggtctcgaacccctgacctcaagtgatcctcctg-ctcggcctcctgaagggcgagggttacaagagtgagccaccgcatccggccTAGGTTTCTCTTTCTACGTCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14049179 350 - 49578535 TGTTGTTGTGAAATCAGGtttctctc--tctc--------tgtcttgttttttcccttgagatggggtcacgctctgttgcccaggctagagtgcagtgacgcaatctcagctcactgcatcctctgcctcctgggttccagtgatcctcctgcctcagcctcctgggaagctgggattataggcacacaccaccatgcccagctaatttttgtatttttagtagagatgcagtttcactatgtgggccaggctggtcttgaactcctgacctca--cactcttcctaccttggcctcccagagggctgggattacatgagtgagccaccccgcctggccCAGCTTTCTCTTTGTGCATCTC i calJac3.chr19 C 0 C 0 e mm10.chr1 178669669 694 + 195471971 I e canFam3.chr7 36243640 6 + 80974532 I a score=378402.000000 s hg38.chr1_KI270759v1_alt 53644 126 + 425601 CTGGGAAAAGGTTGGCAGCTCCT----AGGAGATACTGACCAGTTAGTTGATGGGTCTGTGA---TTCAAATCGAACATCTAGCAAAGCCCCTACGAAGCATTAGTCACTCTTGTGGGAGAAATGAGGAAGCG s panTro4.chr1 224799277 126 + 228333871 CTGGGAAAAGGTTGGCAGCTCCT----AGGAGATACTGACCAGTTAGTTGATGGGTCTGTGA---TTCAAATCGAACATCTAGCAAAGCCCCTACGAAGCATTAGTCACTCTTGTGGGAGAAATGAGGAAGCG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226158960 126 - 229942017 CTGGGAAAAGGTTGGCAGCTCCT----AGGAGACACTGACCAGTTAGTTGATGGGTCTGTGA---TTCAAATCGAACATCTAGCAAAGCCCCTATGAAGCATTAGTCAGTCTCGCGGGAGAAATGAGGAAGCG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140048334 126 - 143122389 CTGGGAAAAGGTTGGCAGCTCCT----AGGAGACACTGACCAGTTAGTTGATGGGTCTGTGA---TTTGAATCGAACATCTAGCAAAGCCCCCACGAAGCGTTACTCACTCTTGCGGGAGAAATGAGGAAGCG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16764634 123 - 229590362 CTGGGAAAAGGTTGGCAGCTCCT----AGGAGACACTGACCAGTTAGTTGCTGGGTCTGTGA---TTCGAATCGGACATCTAGCAAAGACCCCATGAAGCATTACTCACTCTTGCGGGAGAAATGAGGAA--- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223527061 123 - 227556264 CTGGGAAAAGGTTGGCAGCTCCT----AGGAGACACTGACCAGTTAGTTGCTGGGTCTGTGA---TTCGAATCGGACATCTAGCAAAGACCCCATGAAGCATTACTCACTCTTGCGGGAGAAATGAGGAA--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16576920 123 - 220367699 CTGGGAAAAGTTTGGCAGCTCCT----AGGAGACACTGACCAGTTAGTTGCTGGGTCTGTGA---TTCGAATAGGACATCTAGCAAAGACCCCATGAAGCATTACTCACTCTTGCGGGAGAAATGAGGAA--- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82376241 123 + 85787240 CTGGGAAAAGGTTGGCAGCTCCT----AGGAGACACTGACCAGTTAGTTGCTGGGTCTGTGA---TTCGAATCGGACATCTAGCAAAGACCCCATGAAGCACTGCTCACTCCTGCGGGAGAAATGAGGAA--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14049529 125 - 49578535 TTGGGAAGAAGTTGGTAGCTCCT----AGGAGACACTGACCAGGTAGTGGACAGCTCTGTGA---TTCAAAT-AAACATCTAGCAAAGCCCCTGAGAAGCGTTACTCACTCTTTTGGGAGAAACGAGGAAGAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36243646 129 + 80974532 CTAAGACAGAGCCACCAGCTCCTGGGCAGGAGATACTGGCC----AATCGTGAGCTCTGTGAACGGCCTACCTGAATGGCCCACAGAGTGCCTTTGGAGCACTGCCCACGCCTGGGGGAGAAATAAGGAGTCC i canFam3.chr7 I 6 C 0 e mm10.chr1 178669669 694 + 195471971 I a score=476264.000000 s hg38.chr1_KI270759v1_alt 53770 137 + 425601 TTTTCAGTAGGC--T-GTTAGAGTGAGAAGCATCAGATTCTTAGTT-CCATGGAAATGAACGCCTCTTGGAGTGTTTCATCTTTTAAAATAGAGAAGGAAGCTGAGAGTCATTCA--GGCCATGCTCAGAGATGTCAGCTCAG s panTro4.chr1 224799403 137 + 228333871 TTTTCAGTAGGC--T-GTTAGAGTGAGAAGCATCAGATTCTTAGTT-CCATGGAAATGAACGCCTCTTGGAGTGTTTCATCTTTTAAAATAGAGAAGGAAGCTGAGAGTCATTCA--GGCCATGCTCAGAGATGTCAGCTCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226159086 137 - 229942017 TTTTCAGTAGGC--T-GTTAGAGTGAGAAGCATCAGATTCTTAGTT-CCATGGAAATGAACACCTCTTGGAGTGTTTCATCTTTTAAAATAGAGAAGGAAGCTGAGAGTCATTCA--GGCCATGCTCAGAGATGTCAGCTCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140048460 137 - 143122389 TTTTCAGTAGGC--T-GTTACGGTGAGAAGCATCAGATTCTTAGTT-CCATGAAAATGAATGCCTCTTGGAGTGTTTCATCTTTTAAAATAGAGAAGGAAGCTGACAGTCATTCA--GGCCATGCTCAGAGACGTCAGCTCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16764757 137 - 229590362 TTTTCAGTAGGC--T-GTTACAATGAGAAGTATCAGATTCTTAGTT-CCATGGAAATGAATGCCTCTTGGAGTGTTTCATCTTTTAAAATAGAGAAGGAAGCTGAGAGTCATTCA--GGCCACGCTCAGAGATGTCAGCTCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223527184 137 - 227556264 TTTTCAGTAGGC--T-GTTACAATGAGAAGTATCAGATTCTTAGTT-CCATGGAAATGAATGCCTCTTGGAGTGTTTCATCTTTTAAAATAGAGAAGGAAGCTGAGAGTCATTCA--GGCCACGCTCAGAGATGTCAGCTCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16577043 137 - 220367699 TTTTCAGTAGAC--T-GTTACAATGAGAAGTATCAGATTCTTAGTT-GCATGGAAATGAATGCCTCTTGGAGTGTTTCGTCTTTTAAAATAGAGAAGGAAGCTGAGAGTCATTCA--GGCCACGCTCAGAGATGTCAGCTCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82376364 139 + 85787240 TTTTCAGTGGGCTGT-GTTACAATGAGAAGTATCAGATTCTTAGTT-CCATGGAAATGAATGCCTCTTGGAGTGTTTCATCTTTTAAAATAGAGAAGGAAGCTGAGAGTCATTCA--GGCCACGCTCAGAGATGTCAGCTCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14049654 136 - 49578535 TTTTCAGTAGGC--T-GTTACAGTGAGAAGCATCAGATTCTTAGTT-CCATGGACAGGAATGCCTCTTGGAGTGTTTCATCTTTTAAAATAGAGAAGGAAGCTGAGAGTCATTCA---GTCATGTTCAGAGATGTCAGCTCAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178670363 137 + 195471971 TTTTCAGTTGAC--CAGTTCCAGTGAAAATCATAGG---CTCAGCTGCCATAGAAACCAACAACTCTTAGATGAGTTGAACCTTTAAAATAGAGAA-GAAACTAGGCGCCATTCAAAGAGCAGCCCAAGAGATTTGAGTTAAG i mm10.chr1 I 694 I 1106 s canFam3.chr7 36243775 106 + 80974532 TTTTCAG-------T--------TGAGAAACAT---GTTCTTACTT-CGATGGAAATGAACAACTC--AGATCATGTCACCTCTGAGCAGAGGGAACAAGGCTGGGAGCTACGCA--GTCTGTGCTCAG-------------- i canFam3.chr7 C 0 C 0 a score=87972.000000 s hg38.chr1_KI270759v1_alt 53907 26 + 425601 GAACTCCAGGAACCCAGTATTATTTT s panTro4.chr1 224799540 26 + 228333871 GAACTCCAGGAACCCAGTATTATTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226159223 26 - 229942017 GAACTCCAGGAACCCAgtattatttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140048597 26 - 143122389 GAACTCTAGGAACCCAGTAttttctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16764894 26 - 229590362 GAACTCCAGGAACCCAGTATTATTTt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223527321 26 - 227556264 GAACTCCAGGAACCCAGTATTATTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16577180 25 - 220367699 GAACTCCA-GAACCcagtattatttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82376503 26 + 85787240 GAACTCCAGGAACCCAGTATTATTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14049790 26 - 49578535 GAACTCCAGGGACCCATTATTATTTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36243881 26 + 80974532 GAATTCCACGGATCCATTCTTACTTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178670500 1106 + 195471971 I a score=14082.000000 s hg38.chr1_KI270759v1_alt 53933 12 + 425601 GAttccttcctt s panTro4.chr1 224799566 12 + 228333871 AATTCCTTCNNN i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226159249 10 - 229942017 gattccttcc-- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140048623 12 - 143122389 tctttcttttct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16764920 12 - 229590362 gatttctttttt i rheMac3.chr1 C 0 I 6 s macFas5.chr1 223527347 12 - 227556264 GATttctttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16577205 9 - 220367699 gattttttt--- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82376529 12 + 85787240 GATTTCTTTttt i chlSab2.chr25 C 0 I 6 s calJac3.chr19 14049816 12 - 49578535 GATTTCTTTCTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178670500 1106 + 195471971 I e canFam3.chr7 36243907 0 + 80974532 C a score=-24522.000000 s hg38.chr1_KI270759v1_alt 53945 85 + 425601 ccttcct-tcattccttccctccttccct---cctttccttacttccctccctcccttccctccttccctcccttccttccttccttcc s panTro4.chr1 224799578 66 + 228333871 NNNNNNN-------------------CCt---cctttc-ttacttccctccctcccttccctccttccctcccttccttccttccttcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226159259 40 - 229942017 --------------------------------------------ttcctccctcccttccttcctt-----ccttccttccttccttct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140048635 86 - 143122389 tttccttttcttttcttttctcttttcttttccttttcttttctttctttcttccccttcctcc--cctttcttttctttctttcttt- i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223527359 8 - 227556264 -----------------------------------------------------------------------------tttttgta---- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16577214 12 - 220367699 -------------------------------------------------------------------------ttcttttttgta---- i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14049828 21 - 49578535 ----------------------------------------------------------------TTTTCttttttttttttttta---- i calJac3.chr19 C 0 C 0 e mm10.chr1 178670500 1106 + 195471971 I e canFam3.chr7 36243907 0 + 80974532 C e rheMac3.chr1 16764932 6 - 229590362 I e chlSab2.chr25 82376541 6 + 85787240 I a score=409502.000000 s hg38.chr1_KI270759v1_alt 54030 149 + 425601 gatatgggttttcctcatgttgtccaggctggtcttgaactgctggctcaactgatccacctgccttgctttgggctcccatagtgctgggattacaggtgtaagccaatgggcccagccTATTGTGATTTCTTT--Ctttctttctttct s panTro4.chr1 224799644 149 + 228333871 gatatgggttttcctcatgttgtccaggctggtcttgaactgctggctcaactgatccacctgccttgctttggtctcccatagtgctgggattacaggtgtaagccaatgggcccagccTATTGTGATTTCttt--ctttctttctttct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226159299 149 - 229942017 gagatgggttttcctcatgttgtccaggctggtcttgaactcctggctcaactgatccacctgccttgctttgggctcccatagtgctgggattataggtgtaagccaatgggcccagcCTATTATGATTTCttt--ctttcttttttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140048721 145 - 143122389 ----tgggttttcctcatgttgtccaggctggtcttgaactcctggctccagtgatccacctgccttgctttgggctcccatagtgctgggattacaggtgtaagccaatgggcccagccTATTGTGAtttcttt--ctttctttctttct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16764938 149 - 229590362 gagatgggttttcctcatgttgtccaggctgatctcgaactcctggcttaagtgatccacctgcctggctttgggctcccaaagtgctgggattacaggtgtgagccactgcacccagccTATTGTGAttttttt--ctttctttttttat i rheMac3.chr1 I 6 C 0 s macFas5.chr1 223527367 149 - 227556264 gagatgggttttcctcatgttgtccaggctgatctcgaactcctggcttaagtgatccacctgcctggctttgggctcccaaagtgctgggattacaggtgtgagccactgcacccagccTATTGTGAttttttt--ctttctttttttat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16577226 149 - 220367699 gagatgggttttcctCATGTCGTcgaggctgatctcgaactcctggcttaagtgatccacctgcctggctttgggctcccaaagtgctgggattacaggtgtgagccactgcacccagcctattgtgattttttt--ctttctttttttat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82376547 149 + 85787240 gagatgggttttcctcatgttgtccaggctgatctcgaactcctggctcaagtgatccacctgcctggctttgggctcccaaagtgctgggattacaggtgtgagccactgcacccagccTATTGTGAttttttt--ctttctttttaaat i chlSab2.chr25 I 6 C 0 s calJac3.chr19 14049849 146 - 49578535 -----aagatttccccatgttatccgtgctggtcttgaactcctggctcaagtgatccacctgcctcactttggcctcccaaagggctgggattacttgtgtgagtcattgcacccACCCTATTTTGATctccctgcctcccttcctccct i calJac3.chr19 C 0 I 1024 e mm10.chr1 178670500 1106 + 195471971 I e canFam3.chr7 36243907 0 + 80974532 C a score=73482.000000 s hg38.chr1_KI270759v1_alt 54179 47 + 425601 tttttttttttttctgagacagggtctcactctgtcacccgggctgg s panTro4.chr1 224799793 44 + 228333871 tttttttttt---ctgagacagggtctcactttgtcacccgggctgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226159448 44 - 229942017 tttttttttt---ctgagacagggtctcactcaatcacccaggctgg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140048866 40 - 143122389 tttttt-------ctgagacagggtctcactctgtcacccaggctgg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16765087 35 - 229590362 t------------ctgagacagggtctcactctgtcgcccaggctgg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223527516 35 - 227556264 t------------ctgagacagggtctcactctgtcgcccaggctgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16577375 35 - 220367699 t------------ctgagacagggtctcactatgtcatccaggctgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82376696 35 + 85787240 t------------ctgagacagagtctcactctgtcccccagactgg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178670500 1106 + 195471971 I e canFam3.chr7 36243907 0 + 80974532 C e calJac3.chr19 14049995 1024 - 49578535 I a score=721413.000000 s hg38.chr1_KI270759v1_alt 54226 246 + 425601 agtgcagtggtgagatctgagctcactgcaacctctgcctcccaggttcaagtgattctcgtgcctcagcctcctgagtagctgggattacaggcacctaccaccatgcccggctaa-tttttttatttttaggagagatggggtttctccacgttggcca----ggatggtctcaaactcttgacctcaagtgatc----------cacccaccttgacctcccaaagttctgggattacaggtgtgagccactgcaccc s panTro4.chr1 224799837 246 + 228333871 agtgcagtggtgagatctgagctcactgcaacctctgcctcctaggttcaagtgattctcgtgcctcagcctcctgagtagctgggattacaggcacctaccaccatgcccggctaa-ttttttaatttttagtagagatggggtttctccacgttggcca----ggatggtctcaaactcttgacctcaagtgatc----------cacccaccttgacctcccaaagtgctgggattacaggtgtgagccactgcgccc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226159492 246 - 229942017 agtgcagtggtgagatctcagctcactgcaacctctgcctcccaggttcaagtgattctcatgcctcatcctcctgagtagctgggattacaggcacctaccaccatgcccggctaa-tttttttatttttagtagagatggggtttcttcatgttggcca----ggatggtctcaaactcttgacctcaagtgatc----------catccaccttgacctcccaaagtgctgggattacaggtgtgagccactgcgccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140048906 256 - 143122389 agtgcagtggtgagatctcagctcactgcaacctctgcctcccaggttcaagcgattctcgtgcctcagcctcctgagtagctgggattacaggcatctaccaccacgcctggctaa-tttttgtatttttagtagacatggggtttctccatgttggcca----ggctggtctcaaactcttgacctcaagtgatctggcctaaggctcacaccttagcctcccaaagtgctgggattacaggtgtgagccactgagtcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16765122 246 - 229590362 agtgcagtggcgtgatctcagttcactgcaacctccgcctcccaggttcaagcaattctcgtgcctcagcctcctcagtagctgggattacaggcacctaccaccacgcctggctaa-tttttctatttttagtagagatggggtttctccatgttggcca----ggctggtctcaaactcttgacctcaagtgatc----------cacccacctcagcctcccaaaatgctgggattacaggtgtgagccaccatgccc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223527551 250 - 227556264 agtgcagtggcgtgatctcagttcactgcaacctccgcctcccaggttcaagcaattctcgtgcctcagcctcctcagtagctgggattacaggcacctaccaccacgcctggctaa-tttttctatttttagtagagatggggtttctccatgttggccaggctggctggtctcaaactcttgaccttaagtgatc----------cacccacctcagcctcccaaaatgctgggattacaggtgtgagccaccatgccc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16577410 246 - 220367699 agtgcagtggcaccatctcaggtcactgcaacctccgcctcccagattcaagcgattctcatgcctcagcctcctgagtagctgggattacaggcacctaccaccacccccggctaa-tttttctatttttagtagagatggggtttctccatgttggcca----ggctggtctcaaactcttgatctcaagtgatc----------cacccacctcagcctcccaaaatgctgggattacaggtatgagccaccatgccc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82376731 246 + 85787240 agtgcagtggcacgatctcagttcactgtaacctccgcctcccaggttcaagcaattctcgtgcctcagcctcctgagtagctgggattacaggcacctaccaccacgcctggctaa-tttttctatttttagtagagatggggtttctccatgttggcca----ggctggtctcaaactcttgacctcaagtgatc----------cacctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccatgcct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14051019 245 - 49578535 agtgcgatgctgcgatctcagctcactgcaacctccacctcccaggttcaagtgattctcgtgcctcagcctcctgagtagctgggaatacaggtgcctaccaccatgcctgactaattttttttatttttagtagagatagggttttgccatgttggcca----ggctgctctcaaactcttgacctcaagtgatc----------cacccatcttgacttcccaaagtgctgggattacaggtgtgagccact--gTCC i calJac3.chr19 I 1024 C 0 e mm10.chr1 178670500 1106 + 195471971 I e canFam3.chr7 36243907 0 + 80974532 C a score=786104.000000 s hg38.chr1_KI270759v1_alt 54472 251 + 425601 ggGCTGATTTA-----AGAGGGCTTTGACTTGACCAGATGT----GGTGGTTAAGTGAATATGATATGTTCCCTTCTTTATCATCCTCTCTGTTCTTAATTGCAAAAG----CGCCAAATCCTCCTAGATAAAAGACAGCCCTAAGATCATTGTCACCAT-----CCTCCTTATCCTCATC-CCAACATTATAT-GAAGTTCTAAATTTAT----ACAAGTTACTGTATTAGATACTGAGACTAGTTACATTGATAATAATTACTACCATTTATT s panTro4.chr1 224800083 249 + 228333871 ggGCTGATTTA-----AGAAGGCTTTGACTTGACCAGATGT----GGTGGTTAAGTGAATATGATACGTTCCCTTCTTTATCATCCTCTCTGTTCTTAATTGCAAAAG----CGCCAAATCCTCCTAGATAA--GACAGCCCTAAGATCACTGTCACCAT-----CCTCCTTATCCTCATC-CCAACATTATAT-GAAGTTCTAAATTTAT----ACAAGTTACTGTATTAGATACTGAGACTAGTTACATTGATAATAATTACTACCATTTATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226159738 254 - 229942017 ggGCTGATTTCTTTT-AAAAGGCTTTGACTT-ATCAGATGT----GGTGGTTAAGTGAATATCATACGTTCCCTTCTTTATCATCCTCTCTGTTGTTAATTGCAAAAG----TGCCAAATCCTCCTAGATAAAAGAAAGCCCTAAGATCATTGTCACCAT-----CCTCCTTATCCTCATC-CCAACATTATAT-GAAGTTCTAAATTTAT----ATAAGTTACTGTATTAGATACTGAGACTAGTTACATTGATaattattactaccatttatt i ponAbe2.chr1 C 0 I 543 s nomLeu3.chr5 140049162 260 - 143122389 agGCTGATCTCTTTTAAGAAGGCTTTGACTTGACCTGATGTAGGAGGTGGTTAAGGGAATATCATATGTTCCCTTCTTTATCATCCTCTCTGTTCTTAATTGCAAACG----TACTAAATTCTCTTAGATAAAAGAAAGCCCTAAGATCATTGTCACCAT-----CCTCCTTATCCTCATC-CCAACATTATAT-GAAGTTCTAAATTTAT----ACACGTTACTGTATTAGATACTGAGACTAGTCACATTGGTAATAATTACTACCATTTATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16765368 261 - 229590362 ggccTGATTTCTTTCAAGAAGGCTTTGACTTGATCAGATGTAGGAGGTGGTTAAGTGAACATCATATGTTCCTTTCTTTATCATCCTCTCTGTTCTTAATTGCCAAAG----CGCTAAATCCTCCTAGATAAAAGAAAGCCCTAAAATCATTGTCACCAT-----CCTCCTTATCCTCATCACCACCATTATAT-GAAGTTCTAAATTTAT----GCAAGTTACTGTATTAGATACTGAGACTAGTCACATTGATAATAATTACTACCATTTATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223527801 261 - 227556264 ggccTGATTTCTTTCAAGAAGGCTTTGACTTGATCAGATGTAGGAGGTGGTTAAGTGAACATCATATGTTCCTTTCTTTATCATCCTCTCTGTTCTTAATTGCCAAAG----CGCTAAATCCTCCTAGATAAAAGAAAGCCCTAAAATCATTGTCACCAT-----CCTCCTTATCCTCATCACCACCATTATAT-GAAGTTCTAAATTTAT----GCAAGTTACTGTATTAGATACTGAGACTAGTCACATTGATAATAATTACTACCATTTATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16577656 261 - 220367699 ggcctgatttcTTTCAAGAAGGCTTTGACTTGACCAGATGTAGGAGGTGGTTAAGTGAACATCATATGTTCCTTTCTTTATCATCCTCTCTGTTCTTAATTGCAAAAG----TGCCAAATCCTCCTAGATAAAAGAAAGCCCTAAAATCATTGTCACCAT-----CCTCCTTATCCTCATCACCACCATTATAT-GAAGGTCTAAATTTAT----GCAAGTTACTGTATTAGATACTGAGACTAGTCACATTGATAATAATTACTACCATTTATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82376977 261 + 85787240 ggccTGATTTCTTTCAAGAAGGCTTTGACTTGACTAGATGTAGGAGGTGGTTAAGTGAACATCATATGTTCCCTTCTTTATCATCCTCTCTGTTCTTAATTGAAAAAG----CGCTAAATCCTCGTAGATAAAAGAAAGCCCTAAAATCATTGTCACCAT-----CCTCCTTATCCTCATCACCACCATTATAT-GAAGTTCTAAATTTAT----GCAAGTTACTGTATTAGATACTGAGACTAGTCACATTGATAATAATTACTACCATTTATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14051264 255 - 49578535 AGCCTGATTTATTTTAAGAAGGCGTTGACTGGACCAGATGTAGCAGGTGGTTAAGTGATTATCATACGTTTCCTTCTTTATCATCCACTCTGCTCTTAACTGCAAAAG----CACCAAATCCTCCTAGATAAAAATAAGCCCTAAGATCACTGTCACCAT-----CGTCCTTATCCTCACCACCACCATTATAT-GAAGTTCTAAATTTAT----GCAAGGTACTGTATTAGATGCTGAGAATAGTCGCATTGCTAATCATTACTACCA------ i calJac3.chr19 C 0 C 0 s canFam3.chr7 36243907 262 + 80974532 -----GGGTTCTTTAAAGAGAACTATGACTTACCCTAATATGAAAGAT-GTTAACTGAAGGCCATATATTCTCATCTTTATCATGTCCTCACCTCTTCTTTCCAAAAGTGTTTGCTAAATCCTCCTGCACAAGAGGGAATCCTGGGatcaccgtcaccatattgccatcgtcatcatcatcatcatcatcatcCAAAAAATCTAAATTGATAAACACAACATCCAGTATTAGATGCTGAGAAATGTGACACTGACACTAATTActacc------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178670500 1106 + 195471971 I a score=729518.000000 s hg38.chr1_KI270759v1_alt 54723 308 + 425601 TAAGGGTGataataattactaccacttattcagcatttaccaagggccaggtctgtg---ctaaaaatgttgcacatattatcacatttaattcttacttaactcaataaaataagtatgattattgactcccatttttaca-ttaaggagactgaagcttagagagatttgtgaaaaatggctcctggtcactcagctactaagtaatagaagcaggacttgaaccTCCCATACCCTTAACCAAAAGTTTTCAAAATAGTCAACA----CTGTCCATACCATCTAGTTGGAAAAGATGAGACCTG--GACATAAAAA s panTro4.chr1 224800332 308 + 228333871 TAAGGGTGataataattactaccacttattcagcatttaccaagggccaggtctgtg---ctaaaaatgttgcacatattatcacatttaattcttacttaactcaataaaataagtatgattatcgactcccatttttaca-ttaaggagactgaagcttggatagatttgtgaaaaatggctcctggtcactcagctactaagtaatagaagcaggactcgaaccTCCCATACCCTTAACCAAAAGTTTTCAAAATAGTCAACA----CTGTCCATACCATCTAGTTGGAAAAGATGAGACCTG--GACATAAAAA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140049422 303 - 143122389 TAACGGTGataataattactaccatttattcagcatttaccaagggccaggtctgtg---ctaaaaatgttgcacatattatcacatttaattcttactt-----aataaaataagtatgattatcaactcccatttttaca-ttaaggagactgaagcttggatagatttgtgaaaaacggctcctggtcactcagctactaagtaatagaggcaggactcgaaccTGCCATACCCTTAACCGAAAGTTTTCAGAATAGTGAACA----CCGTCCATACCATCTAGTTGGAAAAGATGAGACCTA--GACATAAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16765629 294 - 229590362 TAACGGTGataataattactaccatttatttagcatttaccaaggaccaggtctgtg---ctaaaaatgttgcacatattatcacatttaattcttactt-----aataaaataagtataattatcaactccca----------taaggagactgaagcttggatagatttgtgaaaaatggcttctggtcactcagctactaagtaatagaggcaggactcgaaccTCCCATACCCTTAACCAAAAGTTTTCAAAGTACTCAACA----CTGTCCATACCATCTAGTTGGTAAAAATGAGACCTA--GACATAAAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223528062 294 - 227556264 TAACGGTGataataattactaccatttatttagcatttaccaaggaccaggtctgtg---ctaaaaatgttgcacatattatcacatttaattcttactt-----aataaaataagtataattatcaactccca----------taaggagactgaagcttggatagatttgtgaaaaatggcttctggtcactcagctactaagtaatagaggcaggactcgaaccTCCCATACCCTTAACCAAAAGTTTTCAAAGTACTCAACA----CTGTCCATACCATCTAGTTGGTAAAAATGAGACCTA--GACATAAAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16577917 299 - 220367699 TAACGGTGATAATAATTACTaccatttatttagcatttaccaAGGACCAGGTCTGTG---CTAAAAATGTTGCGcatattatcacatttaattcttACTTAACtcaataaaataagtataattatCAACTCCCA----------TAAGGAGACTGAAGCTTGGATAGATTTGTGAAAAATGGCTCCTGGTCACTCAGCTACTAAGTAATAGAGGCAGGACTCGAACCTCCCATACCCTTAACCAAAAGTTTTCAAAGTACTCAACA----CTGTCCATACCATCTAGTTGGAAAAGATGAGACCTA--GACATAAAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82377238 299 + 85787240 TAACGGCGataataattactaccatttatttagcatttaccaaggaccaggtctgtg---ctaaaaatgttgcacatattatcacatttaattcttacttaactcaataaaataagtataattatcaactccca----------taaggagactgaagcttggatagatttgtgaaaaatggctcctggtcactcaactactaagcaatagaggcaggactcgaaccTCCCATACCCTTAACCAAAAGTTTTCAAAGTACTCAACA----CTGTCCATACCATCTAGTTGGTAAAAATGAGACCTA--GACATAAAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14051519 288 - 49578535 --------------------accatttatttagcatttaccaaggaccaggtctgtg---ccaaaaatgtcacataccttatcacatttaattcttacttaactcagtaaaacagggatgattatcaactcctgtttttaca-ttaaggagactgaagcttggacagatgtgtgaaaaatggcccctggtcactctgctgctaagcaacagtggcaggactggagccTCCCACGCTCTTAACCAAAAGTTTTCAAAAGAATCAACA----CTGTCCATTCCATCTAGTTGGAAAAGATGAGACCTG--GACATAAACA i calJac3.chr19 C 0 I 4 s canFam3.chr7 36244169 271 + 80974532 ------------------------ttcactaagcgtttcccaaggatcaagactgtgtgccccacaacatgatgtgcatgaccacgtttaatccttgctc-----aataaaatggagataattttcatttcccattttcacattttgggagactgaagcttggataggatttttttaaatagctc---------------cgaagcagtaaagtgagggcccaaacctggCACTCTTGTAACGGAACGTTTCCAAGAGAATCAACAGATGCTGTCCATA-CATTGAGTCCG--AAAATGAGACCCAGGGACTTAAAAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178670500 1106 + 195471971 I e ponAbe2.chr1 226159992 543 - 229942017 I a score=10071.000000 s hg38.chr1_KI270759v1_alt 55031 3 + 425601 CTg s panTro4.chr1 224800640 3 + 228333871 CTg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226160535 3 - 229942017 CTg i ponAbe2.chr1 I 543 C 0 s nomLeu3.chr5 140049725 3 - 143122389 CTg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16765923 3 - 229590362 CTg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223528356 3 - 227556264 CTg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16578216 3 - 220367699 ctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82377537 3 + 85787240 CTg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14051811 3 - 49578535 CCg i calJac3.chr19 I 4 C 0 s canFam3.chr7 36244440 3 + 80974532 ATG i canFam3.chr7 C 0 C 0 e mm10.chr1 178670500 1106 + 195471971 I a score=427932.000000 s hg38.chr1_KI270759v1_alt 55034 154 + 425601 gccaggcagagtggctcacgcctgtaatcccagaactttgggaggctgaggtgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatagtaaaactccatcggtactaaaaatacaaaaaaattagccgggtgtggcggtga s panTro4.chr1 224800643 154 + 228333871 gccaggcagagtggctcacgcctgtaatcccagaactttgggaggctgaggtgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatagtaaaactccattggtactaaaaatataaaaaaattagccgggtgtggcggtga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226160538 154 - 229942017 gccaggcggagtggctcacgcctgtaatcccagaactttgggaggctgaggtaggcaaatcacctgaggtcaggagttcgagaccagcctggccaacatagtaaaactccatcggtactaaaaatacaaaaaagttagccgggtgtggcggtga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140049728 149 - 143122389 gccgggcagagtggctcacgcctgtaatcccagaactttgggaggccgaggtgggcaaatcacctgaggtcaggagtttg-----acttttaccaacatggtaaaactccatcagtactaaaaatacagaaaaattagccaggtgtggcagtga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16765926 154 - 229590362 gctgggcgaagtggctcatgcctgtaatcccagaactttgggaggccggggggggcagatcacatgaggtcaggagttcaagaccagcctggctaacatggtaaaactctattggtactaaaaatataaaacaataatccgggtgtggcggtgt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223528359 154 - 227556264 gctgggcgaagtggctcatgcctgtaatcccagaactttgggaggccggggtgggcagatcacctgaggtcaggagttcaagaccagcctggctaacatggtaaaactctatcggtactaaaaatataaaacaataatccgggtgtggcggtgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16578219 154 - 220367699 gctgggtgaagtggctcatgcctgtaatcccagaactttgggaggccgaggtgggcagatcacctgaggtcaggagttcaagaccagcttggccaacatggtaaaactccgtcagtactaaaaatacaaaacaattacccgggcgtggcggtga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82377540 154 + 85787240 gctgggcgaagtggctcatgcctgtaatcccagaactttgggaggccgggatgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatggtaaaactccatcggtactaaaaatacaaaacaattatccgagcgtggcggtga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14051814 152 - 49578535 gctgagcgcggtggctcacgcctgtaatcccggcactttgggaggctgaggtggacgaatcacctgaggtcaggagttcgagaccagcctggctaacatggcaaaaccctgtccctactaaaaatacaaa--aatcagccaggtgtggtggtag i calJac3.chr19 C 0 I 207 e mm10.chr1 178670500 1106 + 195471971 I e canFam3.chr7 36244443 0 + 80974532 C a score=136921.000000 s hg38.chr1_KI270759v1_alt 55188 43 + 425601 acgcctgtagtcccatccacttgggaggctgaggcaagagaat s panTro4.chr1 224800797 43 + 228333871 acgcctgtagtcccatccacttgggaggctgaggcaaaagaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226160692 43 - 229942017 acgcctgtagtcccatccacttgggaggctgaggcaagagaat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140049877 43 - 143122389 atgcctgtagtcccatctacttgggaggctgaggcaagagaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16766080 43 - 229590362 acgcctgtagtcccatctacttgggaggctgaggcgagagagt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223528513 43 - 227556264 acgcctgtagtcccatctacttgggaggctgaggcgagagaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16578373 43 - 220367699 acgcctgtagtcccatctacttgggaggctgaggcaagagaat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82377694 43 + 85787240 acacctgtagtcccatctacttgggaggctgaggcaagagaat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14052173 43 - 49578535 acgcctgtagtcccagctacttgggaggccgaggcaaaagaat i calJac3.chr19 I 207 C 0 e mm10.chr1 178670500 1106 + 195471971 I e canFam3.chr7 36244443 0 + 80974532 C a score=266843.000000 s hg38.chr1_KI270759v1_alt 55231 114 + 425601 tgcttgatgc-agtgagccaaaatcacaccactgcactccagcctgggcaagagagaaagactctgtctcaaa------------------------------------------aataaataaataaaa--GCATTTTCAGGGGTTGTGACGAGAAAT s panTro4.chr1 224800840 114 + 228333871 tgcttgatgc-agtgagccaaaatcacaccactgcactccagcctgggcaagagagaaagactctgtctcaaa------------------------------------------aataaataaataaaa--GCATTTTCAGGGGTTGTGACGAGAAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226160735 114 - 229942017 tgcttgatgc-gatgagcccaaatcacaccactgcactccagcctgggcaagagagaaagactctgtctcaaa------------------------------------------aataaataaataaaa--GCATTTTCAGGGGTTGTGACAAGAAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140049920 110 - 143122389 tgcttgattc-agtgagccaaaatcacgccagtgcactgcagcctgggca----agaaagactctgtctcaaa------------------------------------------aataagtaaataaaa--GCATTTTCAGGGGTTGTGACGAGAAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16766123 114 - 229590362 tgcttgatgc-aatgagccaaaatcacgccactgctctccagcctgggcaacagagcaagactctatctcaaa------------------------------------------aaTCAATCAATAAAA--GCATTTTCAGGGGTTGTGATGAGAAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223528556 114 - 227556264 tgcttgatgc-aatgagccaaaatcacgccactgctctccagcctgggcaacagagcaagactctatctcaaa------------------------------------------aaTCAATCAATAAAA--GCATTTTCAGGGGTTGTGATGAGAAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16578416 114 - 220367699 tgcttgatgc-aatgagccaaaatcacgccactgctctccaacctgggcaacagagcaagactctgtctcaaa------------------------------------------aatcagtCAATAAAA--GCTCTTTCAGGGGTTGTGATGAGAAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82377737 114 + 85787240 tgcttgatgc-aatgagccaaaatcacaccagtgctctccagcctgggcaacagagcaagactctatctcaaa------------------------------------------aatcaataaataaaa--GCATTTTCAGGGGTCGTGATGAGAAAT i chlSab2.chr25 C 0 I 303 s calJac3.chr19 14052216 158 - 49578535 tgcttgagac-agtgagccaaaatcacaccactgcactccagcgtgggcaatagagcaagactctgtctctaactaactaactaactaactaactaactaactaactaactaactaactaactaacaaacATACATTTTCAGGGACTGTGGTGAAAAAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36244443 21 + 80974532 TTCCTGATCCTAATGAG----------------------------GGAC-------------------------------------------------------------------------------------------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178670500 1106 + 195471971 I a score=460856.000000 s hg38.chr1_KI270759v1_alt 55345 136 + 425601 GCCTCACCCATTCTTTTGAGTCATTTATGAACTGTTCTTAATCATGTTACGTTCTAATTAAACATCTCCCTTTTCTTTTGACGTGGAAAAGTCTTTACCTTCTGCAATACCTTTTTCACATGTTGCAGCAAGCAGC s panTro4.chr1 224800954 136 + 228333871 GCCTCACCCATTCTTTTGAGTCATTTATGAACTGTTCTTAATCATGTTACGTTCTAATTAAACATCTCCCTTTTCTTTTGACGTGGAAAAGTCTTTACCTTCTGCAATACCTTTTTCACATGTTGCAGCAAGCAGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226160849 135 - 229942017 GCCTCGCCCATTCTTTTGAGTAATTTATGAGCTGTTCTTAATCATGTTAAGGTCTAATTAAACATCTCCCTTTTCTGTTGACGTGGAAAAGTC-TTACCTTCTGCAATACCTTTTTCACATGTTGCAGCAAGCAGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140050030 134 - 143122389 GCCTCACCCATTCTTTTGAGTAATTTATGAACTGTTCTTAATCATGTTAAGTTCTAATTAAACATCTCCCTTTTCTTTTGACGTGGAAAAGTC-TTACCTT-TGCAATGCTTTTTTCACATGTTGCAGCAAGCAGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16766237 135 - 229590362 GCCTCACCCATTCTTTTGAGTAATTTATGAACTGTTCTTAATCACGTTAAGTTCTAATTAAACATCTCCCTTTTCTTTTGAAGTGGAAAAGTC-TTGCCATCCGCAATACTTTTTTCACATGTTGCAGCAAGCAGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223528670 135 - 227556264 GCCTCACCCATTCTTTTGAGTAATTTATGAACTGTTCTTAATCACGTTAAGTTCTAATTAAACATCTCCCTTTTCTTTTGAAGTGGAAAAGTC-TTGCCATCCGCAATACTTTTTTCACATGTTGCAGCAAGCAGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16578530 135 - 220367699 GACTCACCCATTCTTTTGAGTAATTTATGAACTGTTCTTAATCACGTTAAGTTCTAATTAAACATCTCCCTTTTCTTTTGAAGTGGAAAAGTC-TTGCCATCCGCAATACTTTTTTCACATGTTGCAGCAAGCAGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82378154 135 + 85787240 gccTCACCCATTCTTTTGAGTAATTTATGAACTGTTCTTAATCACGTTAAATTCTAATTAAACATCTCCCTTTTCTTTTGAAGTGGAAAAGTC-TTGCCATCTGCAATACTTTTTTCACATGTTGCAGCAAGCAGC i chlSab2.chr25 I 303 C 0 s calJac3.chr19 14052374 135 - 49578535 GCCTCGCCCATTCTTTTGAGTCGTTCATGAACCGTTCTTAATCCTATCAAGTTCTAATTAAACATCTCCCTTTCCTTTCGAGGGAGCAGAGTC-TTGCCATCTGCAACACCTTTTTCACATGTTGCCGCAAGCAGC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36244464 134 + 80974532 ACCTCACCTGTTCTTTCAAGTAATCCACAAACTGTCCTTAATCATATTAAGTTCTAATTAAAAAGCTCCCTTTTCTTTTGAAGCAGAAGGGTC-TTATCAGCTGCACCACTTTTCT-GTGCATTGCCACGAGCAGC i canFam3.chr7 C 0 C 0 e mm10.chr1 178670500 1106 + 195471971 I a score=1629826.000000 s hg38.chr1_KI270759v1_alt 55481 542 + 425601 CCTATTAATCGCATTCCCACCTGCCTTTGGCCCTCCCAGCTGCCTCGCTTGCAGAACACGATCGTTCAAACGGAAGT----CATTCATG-------GGATCGCCTCTCCCTGCAGTAATCCAGAGCAGAATCACTTAGGCTGAGCACAGCTGCTACATCCCAGGGTAATTTGGTTTCTTATGTAGAAAAACTGCGGTCTGACATTTAACATTTCCTCCTCTGGAGAGTGTTTTTTTC--TTTTTTTGTCTCTGTGAACTTATTACCCAGCATGTCTTCACGCCTTTACATTCA---GCGTGTTCACGTGCTCAGCGCG----GTGTTCATGCCCGCAC---CATTGTGTGATCACCATCACTGGGTGAAGGGCTGTGGGCTTACAAAGCAGACTGGGAATCACAATGACAAACCTTGGGTTCAGACTCCGGGT-----AGGACAGAAGGAAGTTTCTACCTGAGTTTCATGCTAATCAAGTAGGGGTGCAGGCGATCAAGCAGGGGTGCAGGGGTGCACCTGCGATCTCAGGGCATGGCCTCGTTGCTGTCACTACTGCGGTTGTTATTT s panTro4.chr1 224801090 534 + 228333871 CCTATTAATCGCATTCCCACCTGCCTTTGGCCCTCCCAGCTGCCTCGCTTGCGGAACACGATCGTTCAAACGGAAGT----CATTCATG-------GGATCGCCTCTCCCTGCAGTAATCCAGAGCAGAATCACTTAGGCTGAGCACAGCCGCTACATCCCAGGGTAATTTGGTTTCTTATGTAGAACAACTGCGGTCTGACATTTAACATTTCCTCCTCTGGAGAGTGTTTTTTTC--TTTTTTTGTCTCTGTGAACTTATTACCCAGCATGTCTTCACGCCTTTACATTCA---GCGTGTGCACGTGCTCGGCGCG----GTGTTCATGCCCGCAC---CATTGTGTGATCACCATCACTGGGTGAAGGGCTGTGGGCTTACAAAGCAGACTGGGAACCACAGTGACAAACCTTGGGTTCAGACTCCGGGT-----AGGACAGAAGGAAGTTTCTACCTGAGTTTCATGCTAATCAAGTAGGGGTGCAGGCGATCAAGCAGGGGTGCA--------CCTGCGATCTCAGGGCATGGCCTCGTTGCTGTCACTACTGCGGTTGTTATTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226160984 541 - 229942017 CCTATTAATCGCATTCCCACCTGCCTTTGGCCCTCCCAGCTGCCTCGCTTGCGGAACACGATCATTCAAACGGAAGT----CATTCATG-------GGATCACCTCTCTCTGCAGTAATCCAGAGCAGAATCACTTAGGCTGGGCACAGCCACTACATCCCAGGGTAATTTGGTTTCTTATGTAGAACAACTGTGGTCTGACATTTAACATTTCTTCCTCTGGAGAGTATTTTTTTC---TTTTTTGTCTCTGTGAGCTTATTACCCAGCGTGTCTTCACGCCTTTACATTCA---GCGTGTTCACGTGCTCAGCGCG----GTGTTCATGCACGCAC---CGTTGTGTGATCATCATCACTGGGCGAAGGGCTGTGGGCTTACAAAGCAGACTGGGAACCATAATGACAAACCTTGGGTTCAGACTCTGGGT-----AGGCCAGAGGGAAGTTTCTACCTGAGTTTTATGCTAATCAAGTAGTGGTGCAGGTGATCAAGCAGTGGTGCAGGGGTGCACCTGTGATCTCAGGGCATGGCCTCGTTGCTGTCACTACTGCGGTTGTTATTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140050164 542 - 143122389 CCTATTAATTGCGTTCCCACCTGCCTTTGGCCCTCCCAGCTGCCTCGCTTGCGGAACACGATCATTCAAACGGAAGT----CATTCATA-------GGATCACCTCTCTCTGCAGTAATCCAGAGCAGAATCACTTAGGCTGGGCACAGCCGCTACATCCCAGGGTAATTTGGTTTCTTATGTAGAACAACTGCGGTCTGACATTTAACATTTCTTCCTCCGGAGAGTATTTTTTTC--TTTTTTTGTCTCTGTGAACTTATTACCCAGCACGTCTTCATGCCTTTACATTCA---GCGTGTTCACGTGCTCAGTGCG----GTGTTCCTGCACGCAC---CGTTGTGTGACCATCATCACCGGGTGAAGGGCTGTGGGCTTGCAAAGCAGACTGGGAACCATAATGACAAACCTTGGGTTCAGACTCCGGGT-----AGGACAGAAGGAAGTTTCTACTTGAGTTTTATGCTAATCAAGTAGGGGTGCAGGCGATCAAGAGAGGGTGCAGGGGTGCACCTGTGATCTCAGGGCATGGCCTTATTGCTGTCACTACTGCGTTTGTTATTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16766372 527 - 229590362 CCTGTTAATTGCATTCCCACCTGCCTTTGGCCCTCCCAGCTGCCTCACTTGCGGAACACGATCATTCAAACTGAAGT----CATTCGTG-------GGACCACCTCTCTCTGCAGTAATCCCGAGCAGAATCACTTAGGCTGGGCACAGCCGCTCCCTCCCAGGATAATTCGGTTTCTTATGTAGAACAACTGCGGTCTGACATTTAACGTTTCTTCCTCTGGAGAGTACTTTTTTCTTTTTTTTTGTCTC-GTGAACTTATTACCCAGCGTGCCTTTATGCCTTTACATTCA---GTGCGTTCACGTGCTCAGCGCG----GTGTTCG---------------TGTGTGATCCTCATC-CTGGGTGAAGGGCTGTTGGCTTACAAAGCAGACTGGGAAC---AACGACAAACCTTGGGTTCAGACTCCGGAT-----AGGCCAGAAGGAAGTTTCTACCTGAGTTTTATGCTAATCAAGCAGGGGTGCAGGCGATCAAGCAGGGGTGCAGGGGTGCACCTGCTATCTCAGGGCATGGCCTCATTGCTGTCACTACTGCAGTTGTTATTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223528805 527 - 227556264 CCTGTTAATTGCATTCCCACCTGCCTTTGGCCCTCCCAGCTGCCTCACTTGCGGAACACGATCATTCAAACTGAAGT----CATTCGTG-------GGACCACCTCTCTCTGCAGTAATCCCGAGCAGAATCACTTAGGCTGGGCACAGCCGCTCCCTCCCAGGATAATTCGGTTTCTTATGTAGAACAACTGCGGTCTGACATTTAACGTTTCTTCCTCTGGAGAGTACTTTTTTCTTTTTTTTTGTCTC-GTGAACTTATTACCCAGCGTGCCTTTATGCCTTTACATTCA---GTGCGTTCACGTGCTCAGCGCG----GTGTTCG---------------TGTGTGATCCTCATC-CTGGGTGAAGGGCTGTTGGCTTACAAAGCAGACTGGGAAC---AACGACAAACCTTGGGTTCAGACTCCGGAT-----AGGCCAGAAGGAAGTTTCTACCTGAGTTTTATGCTAATCAAGCAGGGGTGCAGGCGATCAAGCAGGGGTGCAGGGGTGCACCTGCTATCTCAGGGCATGGCCTCATTGCTGTCACTACTGCAGTTGTTATTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16578665 527 - 220367699 CCTGTTAATTGCATTCTCACCTGCCTTTGGCCCTCCCAGCTGCCTCACTTGCGGAACACGATCATTCAAACTGAAGT----CATTCGTG-------GGACCACCCCTCTCTGCAGTAATCCGGAGCAGAATCACTTAGGCTGGGCATAGCCGCTGCCTCCCAGGATAATTCGGTTTCTTATGTAGAACAACTGCGGTCTGACATTTAACGTTTCTTCCTCTGGagagtacttttttc-ttttttttgtctc-gTGAACTTATTACCCAGCGTGCCTTTATGCCTTTACATTCA---GTGCGTTCACGTGCTCAGCGCG----GCGTTCG---------------TGTGTGATCCTCATCACTGGGTGAAGGGCTGTTGGCTTACAAAGCAGACTGGGAAC---AATGACAAACCTTGGGTTCAGACTCCGGAT-----AGGCCAGAAGGAAGTTTCTACCTGAGTTTTATGCTAATCAAGCAGGGGTGCAGGCGATCAAGCAGGGGTGCAGGGGTGCACCTGCTATCTCAGGGCATGGCCTCATTGCTGTCACTACTGCAGTTGTTATTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82378289 526 + 85787240 GCTATTAATTGCATTCCCACCTGCCTTTGGCCCTCCCAGCTGCCTCACTTGCGGAACACGATCATTCAAACTGAAGT----CATTCGTG-------GGACCACCTCTCTCTGCAGTAATCCCGAGCAGAATCACTTAGGCTGGGCACAGCCGCTGCCTCCCAGGATAATTCGGTTTCTTATGTAGAACAACTGCGGTCTGACATTTAACGTTTCTTCCTCTGGAGAGTACTTTTTTC-TTTTTTTTGTCTC-GTGAACTTATTACCCAGCGTGTCTTTATGCCTTTACATTCA---GTGCGTTCACGTGCTCAGCGTG----GTGTTCG---------------TGTGTGATCCTCATC-CTGGGTGAAGGGCTGTTGGCTTACAAAGCAGACTGGGAAC---AATGACAAACCTTGGGTTCAGACTCTGGAT-----AGACCAGAAGGAAGTTTCTACGTGAGTTTTATGCTAATCAAGCAGGGGTGCAGGCGATCAAGCAGGGGTACAGGGGTGCACCTGCTATCTCAGGGCAGGGCCTCATTGCTGTCACTACTGCCGTTGTTATTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14052509 477 - 49578535 CCTGGGACTTGCATTCCCACCTGCCTCAGGCCTGGCTAACTGCCTCCCCTGCGGAACACAAGCATTCAGACCGAAGT----CTGTGAGA-------GGCCCACCTCTCTCTGCAGTCATCCGGAGCAGACTCGCTTGTGCTGGGCACAGCCGCGACATCCCAGGATAATTTGGTTTCTTATGTAGAA-AACTGTGGTCTGACATTTCACATTTCTTCCTCTGGAGGGTATTTTTTCT---TGTTTAGTCTCTGCGAGCTGCTTGCCCAGCGTGCCTGTGTGCCTTCCCAGTCA---GTGTTTCCACACACTCAGCTTG----GCATTCA-----GCACAGACACTGTGTGGTCGTCAGC--------------------------AAGCACACTGGGAACAATCAGGACGAACTCCGGGTTCAGGC---GGGT-----A--------GGGAGTTTCCACCTGAGTTTTATGCTAATGAGGAAGGGGTGCAGGCCACC-------------------CACCTGCAGTCT-----CATAGCCTCACTGCTGGCCCTACTGCGCTTGTTATTT i calJac3.chr19 C 0 I 485 s mm10.chr1 178671606 460 + 195471971 CCTGTTAATTGC-TTGCTACCTGCCTTGGTGCAGCCGAGCT-CCACGCATGTGGAACA--GTCGTTCCCACTGAAGCTGCACACTCATGCTGGGGAGGCTCACATCT--TTGCAGTGGTCCAGAGCAGGAT-----------GGCACAATCATGACATCTCAGCCTAATTTAGTTTCTTATGTAAAACAACTTTGGTCTGACATTTAACATTTCTCCCTTCGGTGGGTTTTTTTTCC---CCTTTTGTCTCTCTGAGCTCATTACCCAGCATGTCTTTATACCTTTacacacacacacacccacacacactcacCAGGATTCATATTCATGTGCACAG---CAATATATGATCTTCATTACTGGG-GAAGTGCCACTAGCTCACAGAACAGACTAACAAT---GGTGGCAAATCCTGGGTCCA-------GGA-----AAGGTAGCCAGAAGTTTCTATTGAGGTTGTACATTAATGAAGTAGAACTGTGAGC-------------------------------------------AGCCTC---------------------------- i mm10.chr1 I 1106 C 0 s canFam3.chr7 36244598 454 + 80974532 CGTGCTAATTGCATCCCG--CCGCCT------------GCAGCCTCACTCGGGGACCACAGTCATTCACCCAGGAGC----CA-------------GCCCCGCATCTCCCCACCCTAA-CGACAGCAGGATTACCTAAGCTGGGCACAGTCACTACATCCCAGGTTAATTTGGTTTCTTATGTAGAACAACTTTGGTCTGACACTTAACATTTCTTCCC----ACAACGTTTTTTTCCCCCCTTTGGTCTCTCTGAGCTCATTACCTAGC--------ATTCCTTTACATTTA---TC---------CGCTAGGACTC----GTGTCCA---------------CGTGTGATCGTCATTACCAAGCGAAGCGCTGGTGGCTCACAAAGCTAACGAGGAAGGAGGATGACAAGCCTTGTGTTCAGAC---GGGTGTGGGAGGCCGGAGGGAGGTGTCC------------CGTTCACGAAGCAGGGGCACCAGCCA--------------------GCATCGGAGATTTCAGGG------CTGGCTGCTGTCCCTGCTGGGGTGGTGGTTC i canFam3.chr7 C 0 C 0 a score=711189.000000 s hg38.chr1_KI270759v1_alt 56023 260 + 425601 TGGCTGTCTCAGGCCTCACCTGGAGCAAACCCTAATTCTAACACACTCTGTGTTCTT--TCAGATATCACT-----------CCCCTCTTCTTTT---------CCCGTCTTTCCAGAATGCGCTGTGCTTGTGTCCTCTTTGCCAATCAGAGTGA---GCCGCTTGGGGACTTTAGTCCATGCACATGTCGTGTCAGTGCAGATGATAGAAC-CTTGAGGGT--GGTGACTTCC--CCACCCGGAGCCATGGGTCGTGATTCCTTTGTCAGGCGTTCTGATTGGTTCCT- s panTro4.chr1 224801624 260 + 228333871 TGGCTGTCCCAGGCCTCACCTGGAGCAAACCCTAATTCTAACACACCCTGTGTTCTT--TCAGATATCACT-----------CCCCTCTTCTTTT---------CCTGTCTTTCCAGAACGCGCTGTGCTTGTGTCCTCTTTGCCAATCAGAGTGA---GCCGCTTGGGGACTTCAGTCCATGCACATGTCGTGTCAGTGCGGCTGATAGAAG-CTTGAGGGT--GGTGACTTCC--CCACCCGGAGCCGTGGGTCGTGATTCCTTTGTCAGACGTTCTGATTGGTTCCT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226161525 259 - 229942017 TGGCCGTCTCAGGCCTCACCTGGAACAAACCCTAATTCTAACACACCCTGTGTTCTT--TCAGATATCACT-----------CCCCTCTT-TTTC---------CCCATCTTTCCGGAATGTGCTGTGCTTGTGTCCTCTTTGCCAATCAGAGTGA---GCTGCTTGGGGAATTTCATCCATGCACATGTCGTGTCAGTGCGGATGATAGAAC-CTTGAGGGT--GGTGACTTCC--CCACCCAGAGCCATGGGACGTGATTCCTTTGTCAGACGTCCTGATTGGTTCCT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140050706 260 - 143122389 TGGCCGTCTCAGGCCTCACCTGGAGCAAACCCTAATTCTAACACACCCTGTGTTCTT--TCAAATATCACT-----------GCCCTCTTCTTTC---------CCCATCTTTCGAGAATGTGCTGTACATGTGTCCTCTTTGCTAATCAGAGTGA---GCCACTTGGGGACTTTTGTCCATGCACATGTCATGTCAGTGTGGAGGATAGAAT-CTTGAGGGT--GGTGACTTCC--CTACCCAGAGCCATGGGACGTGATTCCTCTGTCAGACGTTCTGGTTGGTTCCT- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16766899 259 - 229590362 TGGCTGTCTCAGGCCTCACCTGGAGCAAACCCTCATTCTAACACACCCTGTGTTCTT--TCAAATATCCCT------------CCCTCTTCTTTC---------CCCGTCTTTCGAGAATGCGCTGTGCTTGTGTCCTCTTTGCCAATCAGAGTGA---GCCGCTTGGGGACTTTCGTCCATGTACATGTTGTGTCAGTGTGAACGATAGAAC-CCTGAGAGT--GGTGACTTCC--CCACCCGGAGCCATGGGACGTGATTCCTTTGTCAGACATTCTGATTGGTTCCT- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223529332 259 - 227556264 TGGCTGTCTCAGGCCTCACCTGGAGCAAACCCTCATTCTAACACACCCTGTGTTCTT--TCAAATATCCCT------------CCCTCTTCTTTC---------CCCGTCTTTCGAGAATGCGCTGTGCTTGTGTCCTCTTTGCCAATCAGAGTGA---GCCGCTTGGGGACTTTCGTCCATGTACATGTTGTGTCAGTGTGAACGATAGAAC-CCTGAGGGT--GGTGACTTCC--CCACCCGGAGCCATGGGACGTGATTCCTTTGTCAGACATTCTGATTGGTTCCT- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16579192 250 - 220367699 TGGCTGTCTCAGGCCTCACCTGGTGCAAACCCTCATTCTAACACACCCTGTGTTCTT--TCAAATatccct------------ccctcttctttc---------cccGTCTTTCGAGAATGCGCTGTGCTTGTGTCCTCTTTGCCAATCAGAGTGA---GCCGCTTGGGGACTTTCGTCCATGTACATGTTGTGTCAG---------TAGAAC-CTTGAGGGT--GGTGACTTCC--CCACCCGGGGCCACGGGACGTGATTCCTTTGTCAGACGTTCTGATTGGTTTCT- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82378815 271 + 85787240 TGACTGTCTCAGGCCTCACCTGGAGTAAAACCTCATTCTAACACACCCTGTGTTCTT--TCAAATATCCCTccctcttctttcccctcttctttc---------cccgtcttTTGAGAACGCGCTGTGCTTGTGTCCTCTTTGCCAATCAGAGTGA---GCCACTTGGGGACTTTCGTCCACGTACATGTTGTGTCAGTGTGAACGATAGAAC-CTTGAGGGT--GGTGACTTCC--CCACCCGGAGCCACGGGACGTGATTCCTTTGTCAGACGTTCTGATTGGTTCCT- i chlSab2.chr25 C 0 I 238 s calJac3.chr19 14053471 258 - 49578535 TGGCTGTCTCAGG--TCCCCCTGAGCAAACCCTAATTCCAACACACCCAGTGTCTTT--TCAGATATCATT-----------CCCCTCTTTTCCC---------CCAGTCTTCAGAGAACGTGCTGTGCTTGAGTCCTCTTTGCCCGTCAGAGTGA---GCTGC-TGGAGACTTGCATCCACACACGTGTAGTGTGGGTGCGGAGGACAGAACGCTCGAGGGT--GGTTACTTCC--CCACACAGAGCCACGGGGCGTGATTCCTTCATCAGACATTCCGACTGGCTCCT- i calJac3.chr19 I 485 C 0 s mm10.chr1 178672066 146 + 195471971 ------TCTCA------------AGCAAG----------------------------------------CT-------------------------------------TCTTGCTGGGA--------GAATGTGTCCCC--TGCCAATCAGAGGGACCCGCTGCTCAGGGAC------------------------------------AGAGC-CCTGGAGGCTGGGCACCCTTC--CTACAAAGAGCAACCGCACATCATGGCTTCGTCCAACATGCTAATTCATTCCC- i mm10.chr1 C 0 I 1 s canFam3.chr7 36245052 246 + 80974532 TGGC--TTTCAGGACTCAACCGAGACAAAGTCTAATCATAGCGCTCCCTGTGTGCTTTCTCACACACTTCT------------GCCTCTTCCCTCTCGCAAGCACTGAATTTTGCAGAACAAGC----CTTGCAGCCTC--TGCCAAACACAGGGG---AGCACTCACTGTCTTCAGCTTGCACAGTGCTCATG--------------AGAAC---AGCAGGG--GGTGGCTCTCTGTCACGAAGGGCACTGAGATGTCATCACTT-GTC--ACAGTCTGATTTGTTCCCT i canFam3.chr7 C 0 C 0 a score=666287.000000 s hg38.chr1_KI270759v1_alt 56283 249 + 425601 GGCTTCCCT-CTGCG----------------------------------GTGGT-CGTATACCTTGTGTGTGGTTCTGGGAGCT-CATGAACAACAGGAATCAAGGACACTGACC-TTTCGCC----ATCAGCAAACTCCTGCTGTGTAGATTCAG----------GGGCGAAGAGAGTCTCGCGGTGAGAAATACTCTGGGTGAGAATGACCCTCTGTGTCTCCTTGGTCCTTCACACC-------------------------CCATCAAGCACAGGCGGATCAGGAGATGT----------------------AAAGGTCAGGGAGCTGGTAAGCATCGACGAAC s panTro4.chr1 224801884 249 + 228333871 GGCTTCCCT-CTGCG----------------------------------GTGGT-CGTATACCTTGTGTGTGGTTCTGGGAGCT-CATGAACAACAGGAATCAAGGACACTCACC-TTTCGCC----GTCAGCAAACTCCTGCTGTGTAGATTCAG----------GGGCGAAGAGAGTCTCGCGTTGAGAAATACTCTGGGTGAGAATGACCCTCTGTGTCTCCTTGGTCCTTCACACC-------------------------CCATCAAGCGCAGGCGGAACAGGAGATGT----------------------AAAGGTCAGGGAGCTGATAAGCATCGACGAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226161784 272 - 229942017 GGCTTCCGT-CTGTG----------------------------------GTGGT-TGCATGCCTTGTGTGTGGTTCTGGGAGTTCCATGAACAACAGGAATCAAGGACGCTGACC-TTTCGCC----GTCAGTAAACTCCTGCTGTGTAGATTCAG----------GGGCAAAGAGAGTCTCGCGGTGAGAAATACTCTGGGTGAGAATGACCCTCTGTGTCTCCTTGGTCCTTCACACC-------------------------CCATCAAGCACAGGCGGAACATGAGATGTAAAGGTCAGGGAGCCGATAAGCAAAGGTCAGGGAGCTGATAAGCATGGAAGAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140050966 260 - 143122389 GGCTTCCCT-CTGCG----------------------------------GTGGT-CGCATGCCTTGTGTGTGGTTCTGGGAGCT-CATGAACAACAGGAATCGAGGACACCGACCTTTTCGCC----ATCAGTAAACTCTTGCTGTGTAGATTCAGCATGATAACAGGGCGAAGAGAGTCTCATGGTGAGAAATACTCTGGGTGAGAATGACCCTCTGTGTCTCCTTGGTCCTTCACACC-------------------------CCGTCAAGCACAGGCGGAAGAGGAGATGT----------------------AAAGGTCAGGGAGCTGATAAGCATTGATGAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16767158 297 - 229590362 GGCTTCCCT-CTGCGGTGGTCTTCCCTCTGCGGTGGTCTTCCCTTTGAAGTGGT-CACATGCC-TGTGTGTAGGTCTGGGGGCTCCATGAACAGCAGGAATCAAGGACACTGACA-TTCTGCCGGCTGCCGGTAAACTCCTGCTGTGTAGATTCAGCGTGGTAATGGGGCGAAGAGAGTCTCGTGGTGAGAAATACTCTGGGTGAGAATGACCCTCTGTGTCTCCTTCGTCCTTCACGGC-------------------------CCATGAAGCACAGGCGGAACATGAGGTGC----------------------AAAGGTCAGGAAGCTGATGAGCATCGACGAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223529591 297 - 227556264 GGCTTCCCT-CTGCGGTGGTCTTCCCTCTGCGGTGGTCTTCCCTTTGAAGTGGT-CACATGCC-TGTGTGTAGGTCTGGGGGCTCCATGAACAGCAGGAATCAAGGACACTGACA-TTCTGCCGGCTGCCGGTAAACTCCTGCTGTGTAGATTCAGCGTGGTAATGGGGCGAAGAGAGTCTCGTGGTGAGAAATACTCTGGGTGAGAATGACCCTCTGTGTCTCCTTTGTCCTTCACGGC-------------------------CCATGAAGCACAGGCGGAACATGAGGTGC----------------------AAAGGTCAGGGAGCTGATGAGCATCGACGAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16579442 258 - 220367699 GGCTTCCCT-CTGCG----------------------------------GTGGT-CGCATGCC-TGTGTGTA-----GGGAGCTGCAGGAACAACAGGGATCAAGGACACTGACA-TTCCGCCGGCCGCCGGTAAACTCCTGCTGTGTAGATTCAGCGTGATAACGGGGCGAAGAGAGTCTCGTGGTGAGAAATACTCTGGGTGAGAATGACCCTCTGGGTCTCCTTCGTCCTTCACGGC-------------------------CCATGAAGCACAGGCGGAACATGAGGTGC----------------------AAAGGTCAGGGAGCTGATGAGCATCGACGAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82379324 259 + 85787240 GGCTTCCCT-CTGCG----------------------------------GTGGT-CGCATGCC-TGTGTGTAGGTCTGGGAGCTCCATGAACAACAGGGATCAAGGACACTGACA-TTCCGCCGGCCGCCGGTAAACTCCTGCTGTGTAGATTCAGCATGGTAACGGGGCGAAGAGAGTCTC-CGGTGAGAAATACTCTGGGTGAGAATGACCCTCTGTGT---CTTCGTCCTTCACAGC-------------------------CCATCAAGCGCAGGCGGAACATGAGGTGC----------------------AAAGGTCAGGGAGCTGATGAGCATCGACGAAC i chlSab2.chr25 I 238 C 0 s calJac3.chr19 14053729 244 - 49578535 GGCGTCCCT-CTGAG----------------------------------GTGGT-TGCATGCCACATTTGTGGGTCTGGGAGCTCCATGAACAACAGGAATGAAGGATACTGATG-TTTCGCC----ATCAGTAAATGCCTGCTGTGTAGATTCGGCATGGTCACTGGGCGAAGAGAGTCTCGCAGTGAGAAATCCTCTGGCTGAGA----------------TCTTGGTCCTTCACACC-------------------------CCGTCAAGCACAGGTGGAGCATGAGATGT----------------------CAAGGTCAGGGGGCTAATATGCATCTACGAAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178672213 267 + 195471971 GGCTTATCTGCAGAG----------------------------------GTAGG-CAGAGTCATCATCTGTTG-TCTGGGAATTCCAGGAACAGCAGGAATGGAGGCTACAGACT-TGGCTTT---TCTCTGTTAATTCTTGCTGAGTAGATCCAACA--------ACACCAAG----------GGTGAGGGAGACTCTGGCCAATA-TTCCTCTTTAGATCCCGCTCCTCACTTCCACCCGAGCCTCCGCTTTAAAAATCGTCACCATCAAACCCCTGTGGAAAATGACATGG----------------------AAATTCAGGGAAGCTCAAAAGCCATAAAAGGC i mm10.chr1 I 1 C 0 s canFam3.chr7 36245298 221 + 80974532 GGCTTCCCT-CCAGG----------------------------------ATAGTCCAAGTGGCCTGTTGGGGGGCCTGGGGACTCTATGAAGAA-AGAAGTAAAGAGCACTGATG-TGTAGCT-------------------GTGGATCAGTTTGACAAGACAGCTGGGCGAGTAGAGTCTTGC-TTGGGAAGGACTGTGGGTCGTCAGGACCTGATGCATGCCCTTGATCTTTCACGTG-------------------------CCATCAAGAGTGCGTGGAAAGTGAGCTAT----------------------GCAGGTCAG----------------------- i canFam3.chr7 C 0 C 0 a score=48272.000000 s hg38.chr1_KI270759v1_alt 56532 17 + 425601 AAAATCTTCCTGAGGAA s panTro4.chr1 224802133 17 + 228333871 AAAATCTTCCTGAGGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162056 17 - 229942017 AAAATCTTCATGAGGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051226 17 - 143122389 AAAATCTTCGTGAGGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16767455 17 - 229590362 AAAATCTTCCTGAGGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223529888 17 - 227556264 AAAATCTTCCTGAGGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16579700 17 - 220367699 AAAATCTTCCTGAggaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82379583 17 + 85787240 AAAATCTTCCTGAGGAA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178672480 17 + 195471971 AGAAACTTCTTGTGGGA i mm10.chr1 C 0 I 2567 e canFam3.chr7 36245519 0 + 80974532 C e calJac3.chr19 14053973 0 - 49578535 C a score=50754.000000 s hg38.chr1_KI270759v1_alt 56549 21 + 425601 Gggccgggtgcggtggctcat s panTro4.chr1 224802150 21 + 228333871 Gggccgggcgtggtggctcat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162073 21 - 229942017 Gggctgggcgcggtggctcac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051243 21 - 143122389 Gggctgggcgcggtggctcac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16767472 21 - 229590362 Gggccgggtgcagtggctcac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223529905 21 - 227556264 Gggccgggtgcagtggctcac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16579717 21 - 220367699 gggccgggtgtggtggctcac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82379600 21 + 85787240 Gggccgggtgcagtggctcac i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36245519 9 + 80974532 ------------GTGGCTGAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178672497 2567 + 195471971 I e calJac3.chr19 14053973 0 - 49578535 C a score=359873.000000 s hg38.chr1_KI270759v1_alt 56570 173 + 425601 gccggtaatcccagcacgttgggaggccaaggtgggcagatcacgaggtcaagagatcaagaccatcctggccaagatggtgaaaccccgtctctactaaaaaaaaaaaaaaaaaaaaaaaattagccgggtgtggttgtgggcgcctgtagtcccagctactcaggaggctg s panTro4.chr1 224802171 170 + 228333871 gccggtaatcccagcacgttgggaggccaaggtgggcagatcacgaggtcaagagatcaagaccatcctggccaagatggtgaaaccccgtttttactaaaaaaaaaaaaaaaaaaaaa---ttagccgggtgtggttgtgggcgcctgtagtcccagctactcaggaggctg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162094 162 - 229942017 gcctgtagtcccagcactttgggaggccaaggtgggcagatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaacaccgtctctactaaaagtacaaaata-----------tagccgggcatggtggtgggcgcctgtagtcccagctactcaggaggctg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051264 162 - 143122389 gcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaagaaatcaagaccatcctggccaacatggggaaacaccgtctccactaaaaacacaaaaa-----------ttagccgagtgtggtggcggacgcctgtagtcccagctactcagggggctg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16767493 162 - 229590362 gcctgtaatcccagcatgttgggaggccaaggcgggtgcatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaaa-----------tgagctgggtatggtggtgcgtgcctgtaatcccagctactcaggaggctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223529926 162 - 227556264 gcctgtaatcccagcacgttgggaggccaaggcgggtgcatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaaa-----------tgagctgggtgtggtggtgcgtgcctgtaatcccagctactcaggaggctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16579738 162 - 220367699 gcctgtaatcccagcactttgggaggccaaggcgggcgcatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaaa-----------tgagctgggtgtggtggtgcgtgcctgtaatcccagctactcaggaggctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82379621 162 + 85787240 gcctgtaatcccagcactttgggaggccaaggcgggcgcatcacgaggtcaagagatcaagaccatcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaa-----------tgagctgggtgtggtggtgcgcgcctatagtcccagctactcaggaggctg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178672497 2567 + 195471971 I e canFam3.chr7 36245528 0 + 80974532 C e calJac3.chr19 14053973 0 - 49578535 C a score=160986.000000 s hg38.chr1_KI270759v1_alt 56743 70 + 425601 aggcaggagaatcacttgaaccagggaggcggaggttgcagtgagccgagatcgcaccactgcgctccag s panTro4.chr1 224802341 70 + 228333871 aggcaggagaatcacttgaaccagggaggcggaagttgcagtgagccgagatcgcaccactgcgctccag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162256 70 - 229942017 aggcaggagaattgcttgaaccggggaggcggaggttgcagtgagccgagattgcaccactgcactccag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051426 70 - 143122389 aggcaggagaatcgcttgaaccgaggaggcggaggttgcagtgagtcaagattgcaccactgcactccag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16767655 70 - 229590362 aggcaggagaatcacttgaaccggggaggcggaggttgcagtgagctgagatcgtgccactgcactccag i rheMac3.chr1 C 0 I 9 s macFas5.chr1 223530088 70 - 227556264 aggcaggagaatcacttgaaccggggaggcggaggttgcagtgagctgagatcgtgccactgcactccag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16579900 70 - 220367699 aggcaggagaattgcttgaaccggggaggcggaggttgcagtgagctgagatcgtgccactgcactccag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82379783 70 + 85787240 aggcaggagaatcgcttgaaccggggaggcggaggttgcagtgagccgagatcacgccactgcactccag i chlSab2.chr25 C 0 I 9 s canFam3.chr7 36245528 19 + 80974532 AGGC---------------ACCAGGGA-----------------------------CCACAGC------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178672497 2567 + 195471971 I e calJac3.chr19 14053973 0 - 49578535 C a score=3263.000000 s hg38.chr1_KI270759v1_alt 56813 3 + 425601 tct s panTro4.chr1 224802411 3 + 228333871 tct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162326 3 - 229942017 tct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051496 3 - 143122389 tct i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223530158 3 - 227556264 cct i macFas5.chr1 C 0 I 4 s papAnu2.chr1 16579970 3 - 220367699 cct i papAnu2.chr1 C 0 I 4 e mm10.chr1 178672497 2567 + 195471971 I e canFam3.chr7 36245547 0 + 80974532 C e calJac3.chr19 14053973 0 - 49578535 C e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I a score=19051.000000 s hg38.chr1_KI270759v1_alt 56816 37 + 425601 tgcgacagagcaagactccatctcaaaaaaaaaaaaa s panTro4.chr1 224802414 37 + 228333871 cgcgacagagcaagactccatctcaaaaaaaaaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162329 37 - 229942017 cgcgacagagcgagactccatctaaaaaaaaaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051499 37 - 143122389 cgtgacagagcgagactccatctcaaaaaaaaaaaaa i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178672497 2567 + 195471971 I e canFam3.chr7 36245547 0 + 80974532 C e calJac3.chr19 14053973 0 - 49578535 C e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=114208.000000 s hg38.chr1_KI270759v1_alt 56853 122 + 425601 aa----------------TTTTCCTGAGGAAGAAGTAGCATCCCCGAGCTGGCATGTTGGGAGTATCCTTCAATTTCAGATGCTTAAATTCTCCTCTCTGACAATGGCTAATTAAGATTT-GGCCACATTATCTTTA-TT s panTro4.chr1 224802451 138 + 228333871 aaaaaaaaaaaaaaaaaaTCTTCCTGAGGAAGAAGTAGCATCCCCGAGCTCGCATGTTGGGAGTATCCTTCAATTTCAGATGTTTAAACTCCCCTCTCTGACAATAGCTAATTAAGATTT-GGCCACATTATCTTTA-TT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162366 127 - 229942017 aa------------aaTATCTTCCTGAGGAAGAAGTAGCATCCCCGAGCTGGCATGTTGGGCGTATCCTTCAATTTCAGATGCTTAAACTCTCCTCTCTGACAATGGCTGATTAAGGTTT-GGCCACATTATCTTTATTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051536 123 - 143122389 aa----------------TCTTCCCGAGGAAGAAGTAGCATCCCCAAGCTGGCATGCTGGGAATATCCTTCAATTTCAGATGCTTAAACTCTCCTCTCTGAAAATGGCTAATTAAGATTTGGGCCACATTATCTTTA-TT i nomLeu3.chr5 C 0 I 163 s calJac3.chr19 14053973 122 - 49578535 AA----------------TGCTCCTGAGGAAGCAGTAACATCCGCCAGCTGGCGTGTTGGGAGTGTCCTCATATTTCAGATGCTGAAACTCTCTTCTCTGACAATGGCTCACCAAGATTT-GGCCACATTCTCTTTA-TT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36245547 118 + 80974532 --------------------TTCCCGAGGAAGAGGTTACATCCACTAGTTGGTATTTTGAGTGCATCCTTATATTTCTGATATTTAAATTCTCCCTTCTGCCCATAGCTAATTAAGATGT-GGTCAGATTATCTTGC-TC i canFam3.chr7 C 0 C 0 e mm10.chr1 178672497 2567 + 195471971 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=8202.000000 s hg38.chr1_KI270759v1_alt 56975 11 + 425601 TCTCTTCTTTT s panTro4.chr1 224802589 11 + 228333871 TCTCTTCTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162493 11 - 229942017 TCTCTTCTTTT i ponAbe2.chr1 C 0 C 0 s calJac3.chr19 14054095 11 - 49578535 TTTCTTTTTTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36245665 11 + 80974532 TTTCTTTTTCT i canFam3.chr7 C 0 C 0 e mm10.chr1 178672497 2567 + 195471971 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I e nomLeu3.chr5 140051659 163 - 143122389 I a score=17500.000000 s hg38.chr1_KI270759v1_alt 56986 15 + 425601 GAAATTAGTGAGGGG s panTro4.chr1 224802600 15 + 228333871 GAAATTAGTGAGGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162504 15 - 229942017 GAAATTAGTGAGGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051822 15 - 143122389 GAAATTAGTGAGGGG i nomLeu3.chr5 I 163 C 0 s calJac3.chr19 14054106 15 - 49578535 GAAATAAGTGAGGGG i calJac3.chr19 C 0 I 2071 s canFam3.chr7 36245676 15 + 80974532 AAAATTACTGAGGTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178672497 2567 + 195471971 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=910.000000 s hg38.chr1_KI270759v1_alt 57001 1 + 425601 A s panTro4.chr1 224802615 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162519 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051837 1 - 143122389 A i nomLeu3.chr5 C 0 C 0 s canFam3.chr7 36245691 1 + 80974532 A i canFam3.chr7 C 0 I 2196 e mm10.chr1 178672497 2567 + 195471971 I e calJac3.chr19 14054121 2071 - 49578535 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=41712.000000 s hg38.chr1_KI270759v1_alt 57002 75 + 425601 cctgaccttgggtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccacggtgctcCACC s panTro4.chr1 224802616 75 + 228333871 cctgacctcaggtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccacggtgccccgcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162520 75 - 229942017 cctgacctcgggtgatctgcccacctcagcctcccaaagtgctgggattacaggcgtgagccacggtgcccCACC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051838 75 - 143122389 cctgacctcgggtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccacggtgcccCACC i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178672497 2567 + 195471971 I e canFam3.chr7 36245692 2196 + 80974532 I e calJac3.chr19 14054121 2071 - 49578535 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=910.000000 s hg38.chr1_KI270759v1_alt 57077 1 + 425601 A s panTro4.chr1 224802691 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162595 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051913 1 - 143122389 A i nomLeu3.chr5 C 0 C 0 s mm10.chr1 178675064 1 + 195471971 A i mm10.chr1 I 2567 C 0 e canFam3.chr7 36245692 2196 + 80974532 I e calJac3.chr19 14054121 2071 - 49578535 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=105136.000000 s hg38.chr1_KI270759v1_alt 57078 129 + 425601 CCTACGTGTCTTCTTGTATTCCTCTTCATGGGAGAAGT-AGGGAAAAAATGA-TTTGGTATATATTC-CTGAAAGATAAGAGTGTTCTAAGTATCGAATCCTTACACTTAAAACTTTAGGTTGAAAATGTTG s panTro4.chr1 224802692 129 + 228333871 CCTACGTATCTTCTTGTATTCCTCTTCATGGGAGAAGT-AGGGAAAAAATGA-TTTGGTATATATTC-CTGAAAGATAAGAGTGTTCTAAGTATCGAATCCTTAAACTTAAAACTTTAGGTTGAAAATGTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162596 129 - 229942017 CCTACGTGTCTTCTTGTATTCATCTTCATAGGAGAAGT-AGGGAAAAAATGA-TTTGGTATATATTC-CTGAAAGATAAGAGTGTTCTGAGTATCGAATCCTTTAACTTAAAAATTTAGGATGAAAATGTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140051914 129 - 143122389 CCTATGTGTCTTCTTGTATTCCTCTTCGTGGGAGAAGT-AGGGAAAAAATGA-TTTGGTATATATTC-CTGAAAGATAAGAGTGTTCTGAGTATCGAATCCTTAAACTTAAAAATTTAGGATGAAAATGTTG i nomLeu3.chr5 C 0 C 0 s mm10.chr1 178675065 116 + 195471971 CTCAGACATCTTTTCAAATTCCTCTTCATGTGAGAGATGAGACAAAAAATAATTTTTGCATATTTTCTTTGAAAGATAAGAGTACTTTGAG---------------CTTTAAAATTTAGGCT-AAAATATTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36247888 129 + 80974532 CCTAAAAGTTTCCTTGAATTCCTCATCATGGCAGATGT-GGAGGAAAAATAA-TTTTACTACTAGTT-TTGAGAGGGAAGAATGTTTGGGGCACAGAACACTCAAACTTACAGGTTGAGGTTGAAAATGTTG i canFam3.chr7 I 2196 I 205 e calJac3.chr19 14054121 2071 - 49578535 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=118000.000000 s hg38.chr1_KI270759v1_alt 57207 164 + 425601 CCCAAGTGCCAA-------------------------TAAAAATTGGGACCTTAAACATAGAAGTTCACCTTGTGGGTGGGCCCATCGCTGCTCCCGTGAGACTA-TCTCTGA---TCCAGGATGGATCAGAGCTAG-GTGATACAGATGTCTCTGAAGCCCACGAGCTAGGCAGCACGACAGACTGGATGCTT---------------------------- s panTro4.chr1 224802821 164 + 228333871 CCCAAGTGCCAA-------------------------TAAAAATTGGGACCTTAAACATAGAAGTTCACCTTGTGGGTGGGCCCATCGCTGCTCCCGCGAGACTA-TCTCTGA---TCCAGGATGGATCAGAGCTAG-GCGATACAGATGTCTCTGAAGCCCATGAGCTAGGCAGCACGACAGACTGGATGCTT---------------------------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162725 168 - 229942017 CCAAAGTGCCAA-------------------------TAAAAATTGGGACCTTAAACATAGAAGTTCAGCTTGTGGGTGGGCCCATTGCTGCTCCCATGAGACTATTTTCTGAGGTCCCAGGATGGATCAGAGCTAG-ATGATACAGACGTCTCTGAAGCCCACGAGCTAGGCAGCACGACAGACTGGATGCTT---------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052043 168 - 143122389 CCCAAGTGCCAA-------------------------TAAAAATTGGGACCTTAAACATAGACGTTCAGCTTGTGGGTGGGCCCATCGCTGCTCCCGTGAGACTATTTTCTGAGGTCCCAGGATGGATCAGAGCTAG-GCGATACAGATGTCTCTGAAGCCCACGAGCTAGGCAGCACGACAGACTGGATGCTT---------------------------- i nomLeu3.chr5 C 0 C 0 s mm10.chr1 178675181 189 + 195471971 CATAGGTGCCAAAGGCTCGTTTTCATATGTGCTGAAGTAAAAATGGAGGTGATAAA-ATCGAGGTTCTGCCTGTGTGTGGTTTA--TGCTGCTCCAATTTGATGATTTTCTGAGGTCATAAGGTGGGTCAGAGGCAGAACAGCACACGTATCTC-AATGCCCATAAGCAAGGCAG-ATGTCAGACTAGGGGGCT---------------------------- i mm10.chr1 C 0 I 43 s canFam3.chr7 36248222 194 + 80974532 cccaggtgtccc-------------------------CAAAAACTAGGACTTTAAAGATAGAGATTCAGCTTGTACTGGATTCC--CACTGTGCCCATGTGATCATTTCTGGAGGTCCCATAATGAACCAGGACTGG-ACCCTAGGAACATCCCTGGAGCCCATGAGCAAGGCAGCAAGCCAGACTGTGTGCTTATTTCATTTCTTCCTTGAGTCTAGGTTT i canFam3.chr7 I 205 C 0 e calJac3.chr19 14054121 2071 - 49578535 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=25396.000000 s hg38.chr1_KI270759v1_alt 57371 36 + 425601 CTTTTGGTGCCAGCTGATCCAGAGGACATGGCCCTA s panTro4.chr1 224802985 36 + 228333871 CTTTTGGTGCCAGCTGATCCAGAGGACATGGCCCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162893 36 - 229942017 CTTTTGGCGCCAGCTGATCCAGAGGACATGGCCCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052211 36 - 143122389 CTTTTGGTGCCAGCTGATCCAGAGGACATGGCCCTA i nomLeu3.chr5 C 0 C 0 s canFam3.chr7 36248416 36 + 80974532 CTTATGGTGGCCGCTGGCCTGGAGGATGCTCCCCTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178675370 43 + 195471971 I e calJac3.chr19 14054121 2071 - 49578535 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=45324.000000 s hg38.chr1_KI270759v1_alt 57407 50 + 425601 GTCCATCTCCTAGGGCCACTGCCATTCTTTTTGTGTCCATATCAGGAAAG s panTro4.chr1 224803021 50 + 228333871 GTCCATCTCCTAGGGCCACTGCCATTCTTTTTGTGTCCATATCAGGAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162929 50 - 229942017 GTCCATCTCCTGGGGCCACTGCCATTCGTTTTGTGTCCATATCAGGAAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052247 50 - 143122389 GTCCATCTCCTGGGGCCACTGCCATTCTTTTTGTGTCCATATCAGGAAAG i nomLeu3.chr5 C 0 C 0 s mm10.chr1 178675413 47 + 195471971 ATTCATCTTCTGAGCCCTCAGTC---CTCTCTGTGTCCATGTCAGGAAAG i mm10.chr1 I 43 I 22 s canFam3.chr7 36248452 50 + 80974532 GTCTGGCTCTTGGGACCACCGCGGTCCTTTGTGTGTCTGTGACAGAAGAG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14054121 2071 - 49578535 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=25937.000000 s hg38.chr1_KI270759v1_alt 57457 45 + 425601 CATGGTATAATTCGAGGCATCTATGGCTCTGAAGACttcttt------tct s panTro4.chr1 224803071 45 + 228333871 CATGGTATAATTCGAGGCATCTATGGCTCTGAAGACttcttt------tct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226162979 51 - 229942017 CATGGTCGAATTTGAGGCATCTGTGGCTCTGAAGACTTCTTTtctctctct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052297 49 - 143122389 CATGGTATAATTCGAGGCATCTGTGGCTCTGAACACttctct--tctctct i nomLeu3.chr5 C 0 C 0 s canFam3.chr7 36248502 44 + 80974532 GCTGGCAC-ATGTGAGCCATCCATGGTTCTGAAGCCTCCTTT------TCT i canFam3.chr7 C 0 C 0 e mm10.chr1 178675460 22 + 195471971 I e calJac3.chr19 14054121 2071 - 49578535 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=2499.000000 s hg38.chr1_KI270759v1_alt 57502 5 + 425601 ctctc s panTro4.chr1 224803116 5 + 228333871 ctctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226163030 5 - 229942017 ctctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052346 5 - 143122389 ctctt i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178675460 22 + 195471971 I e canFam3.chr7 36248546 0 + 80974532 C e calJac3.chr19 14054121 2071 - 49578535 I e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=219534.000000 s hg38.chr1_KI270759v1_alt 57507 287 + 425601 tctctctttttgagacggagtctcgctctgttgtccaggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcccaggctcaagagattctcttgcctcagtctcctgagtagctgggattagaggcatgcaccacca-acccagctaatttttgcatttttagtagaaacagggtttcaccatgttgggcaggctggtctcggactcctgacctcaggtaatccacccacctcagcctcccaaagtgctggggttacaggcatgagccatcacgcc s panTro4.chr1 224803121 287 + 228333871 tctctctttttgagacggagtctcgctctgttgtccaggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcccaggctcaagagattctcttgcctcagtctcctgagtagctgggattagaggcatgtaccacca-acccagctactttttgcatttttagtagaaacagggtttcaccatgttgggcaggctggtctcagactcctgacctcaggtaatccacccacctcagcctcccaaagcgctgggattacaggcatgagccatcacgcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226163035 287 - 229942017 tctctctttttgagacagagtctcgctctgttgtccaggctggagtgcagtggtgtgatctcagctcactgcaacctccgccacccaggctcaagagattctcttgcctcagtctcctgagtagcttggattagaggcatgcaccacca-acccagctaatttttgcatttttagtagaaacagggtttcaccatgttggtcaggctggtctcagactcctgacctcaggtaatccgcccgcctcagcctcccaaagtgctgggattacaggcatgagccatcatgcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052351 287 - 143122389 tctctttttttgagacagagtctcactctgttgtccaggctggagtgcagtggtgtgatctcagctcactgcaacctctgcctcccaggctcaagagattctcctgcctcagtctcctgagtagctgggattacaggcgtgcaccaccg-acccagctaagttttgcatttttagtaggaacagggtttcaccatgttggtcaggctggtctcggactcctgacctcaggtaatccgcccacctcagcctcccaaagtcctgggattacaggcatgagccatctcgcc i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14056192 281 - 49578535 TCTGtttttttgagatggaatcttactctgc--gccagactggagtgctgtggtgtgatcttggctcacggcaacctccgcctcctgggctcaggcaattctcctgtctcagcctcccgagtagctgggactacaggccag-gccaccatgcccggataatttgtgcatttttagtagagat--ggtttcatcatgttggtaaggctggtcttgaactcctgacctt--gcgatctgcccacctccgcctcccaaagtgctgggattgcaggtgtgagtctccgtgcc i calJac3.chr19 I 2071 C 0 e mm10.chr1 178675460 22 + 195471971 I e canFam3.chr7 36248546 0 + 80974532 C e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=19640.000000 s hg38.chr1_KI270759v1_alt 57794 17 + 425601 cggccTCCTTTTCTCTT s panTro4.chr1 224803408 17 + 228333871 cggccTCCTTTTCTCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226163322 17 - 229942017 cggccTCCTTTTCTCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052638 17 - 143122389 cggccTCCTTTTCCCTT i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14056473 17 - 49578535 cggccTCCTTTTGTCTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178675482 17 + 195471971 CAGCTTCCTTCTCTGTT i mm10.chr1 I 22 C 0 e canFam3.chr7 36248546 0 + 80974532 C e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=30918.000000 s hg38.chr1_KI270759v1_alt 57811 30 + 425601 TTCTTCCTATTTATGACTACCCTCCCTTAA s panTro4.chr1 224803425 30 + 228333871 TTCTTCCTATTTATGACTACCCTCCCTTAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226163339 30 - 229942017 TTCTTCCTATTTATGACTACCCTCCCTTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052655 30 - 143122389 TTCTTCCTGTTTATGACTACCCTCCCTTAA i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14056490 30 - 49578535 TTCTTCCTGTTTATGACTATCCTCATTTAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178675499 19 + 195471971 TGCTT-----------CTACCTCCAAATGA i mm10.chr1 C 0 I 1 s canFam3.chr7 36248546 30 + 80974532 GTCTTCCTGTCGAGGCCTCCCCTCCCCTGA i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I e papAnu2.chr1 16579973 4 - 220367699 I e macFas5.chr1 223530161 4 - 227556264 I a score=1055.000000 s hg38.chr1_KI270759v1_alt 57841 2 + 425601 AG s panTro4.chr1 224803455 2 + 228333871 AG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226163369 2 - 229942017 AG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052685 2 - 143122389 AG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223530165 2 - 227556264 aa i macFas5.chr1 I 4 C 0 s papAnu2.chr1 16579977 2 - 220367699 aa i papAnu2.chr1 I 4 C 0 s calJac3.chr19 14056520 2 - 49578535 AG i calJac3.chr19 C 0 C 0 s mm10.chr1 178675519 1 + 195471971 A- i mm10.chr1 I 1 C 0 s canFam3.chr7 36248576 2 + 80974532 AG i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16767725 9 - 229590362 I e chlSab2.chr25 82379853 9 + 85787240 I a score=408434.000000 s hg38.chr1_KI270759v1_alt 57843 112 + 425601 CAGTATCTTCTTTATTTCAGCACTTAC----AGAAAGCTATGGCTGTTGACCATTCCTTTTTGAAGTTGTGAGTTGTACTAAAATATTTATGTATAATGTGTGGATAAGCACTTGA s panTro4.chr1 224803457 112 + 228333871 CAGTATCTTCTTTATTTCAGCACTTAC----AGAAAGCTATGGCTGTTGACAATTCCTTTTTGAAGTTGTGAGTTGTACTAAAATATTTATGTATAATGTGTGGATAAGCACTTGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226163371 112 - 229942017 CAGTATCTTCTTTATTTCAGCACTTAC----AGAAAGCTATGGCTGTTGACCATTCCTTTGTGAAGTTGTGAGTTATACTAAAATATTTATGTATAATGTGTCGATAAGCACTTGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052687 111 - 143122389 CAG-ATCTTCTTTATTTCTGCACTTAC----AGAAAGCTATGGCTGTTGACCGTGCCTTTTTGAAGTTGTGAGTTGTACTAAAATATTTATGTATAATGTGTGGATAAGCACTTGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16767734 116 - 229590362 cagTATCTTCTTTATTTCAGCACTTACTTTCTGTAAGCTATGGCTGTTGACCGTTCCTTTTTGAAGTTCTGAGTTGTACTAAAATGTTTATGTATAATGTGTGGAGAAGCACTTGA i rheMac3.chr1 I 9 C 0 s macFas5.chr1 223530167 116 - 227556264 cagTATCTTCTTTATTTCAGCACTTACTTTCTGTAAGCTATGGCTGTTGACCGTTCCTTTTTGAAGTTCTGAGTTGTACTAAAATGTTTATGTATAATGTGTGGAGAAGCACTTGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16579979 116 - 220367699 cagtataTTCTTTATTTCAGCACTTACTTTTGGTAAGCTATGGCTGTTGACCGTTCCTTTTTGAAGTTCTGAGTTGTACTAAAATGTTTATGTATAATGTGTGGAGAAGCACTTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82379862 116 + 85787240 cagTATCTTCTTTATTTCAGCACTTACTTTCTGTAAGCTATGGCTGTTGACCGTTCCTTTTTGAAGTTCTGAGTTGTACTAAAATGTTTATGTATAATGTGTGGAGATGCACTTGA i chlSab2.chr25 I 9 C 0 s calJac3.chr19 14056522 111 - 49578535 TGGTATCTTC-TTACTGCAGCACTTAC----AGAAAGCTATGGCTGTTAACCATTCCTTTTTCAAGTTGTAAGTCGTACTGAAATATTTATGTATATTGTGTGGACAAGCCCTTGA i calJac3.chr19 C 0 I 348 s mm10.chr1 178675520 108 + 195471971 CTGACTCCTCTCTGTCTTAGCATATGC----AGAAGGCAATGACTATTGACCCTTCCTCTTTGAAGTCTTCAGTCAATCTAAAACATT----TATAGTGTGCAGAAAAGCCCTAGA i mm10.chr1 C 0 I 34 s canFam3.chr7 36248578 108 + 80974532 CAGCATCGTCTTTATTCCAGCACTCAC----AGAAAGGAGTGTCTGTTGACCATCCCTCTTTGAAGTTTCGAGTTGTGCTAAAATATT----TATAATGTATGGACAAACACTTGA i canFam3.chr7 C 0 I 35 a score=10342.000000 s hg38.chr1_KI270759v1_alt 57955 3 + 425601 TTT s panTro4.chr1 224803569 3 + 228333871 TTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226163483 3 - 229942017 TTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052798 3 - 143122389 TTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16767850 3 - 229590362 TTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223530283 3 - 227556264 TTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16580095 3 - 220367699 TTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82379978 3 + 85787240 TTT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178675662 3 + 195471971 CTT i mm10.chr1 I 34 C 0 s canFam3.chr7 36248721 3 + 80974532 CTT i canFam3.chr7 I 35 C 0 e calJac3.chr19 14056633 348 - 49578535 I a score=1638138.000000 s hg38.chr1_KI270759v1_alt 57958 503 + 425601 ACTGAGGCCTTTTGATGATAAGAACTCACAAAGGG-TTTTAGATCAAGGGTGGCTTCATTGAAGAAACACCTCT--GACATCAGCCAGCAACCGCATTTTCATTAAAGACTCTCAATCTCAGCCTTTCCCTGGACGAGAGAGGAATGGGTTGTTGGCTACTTCCTGGC-----TGTCTGTGGCGGTCGTATTGATGTTGGGCCCAGCTGTG------CTGAATGGCTCTGTTGGTGCTCGCTGGGCTTGCTTTGGCTGGCACAGCTG--TGAGTGGAGGACAGCTGTGAGGAGCGGGAGTTGGTGCTGATTGATGTCTTGTGAACCCCGGCGGAGCACTGAGCTCCAT---------GTATGTACGGATTGGTCCTGTGAGTCACTACAGACTGGGCTAGAGGTGGCAGCAGAGGCATGTGGCGT----------------TAGGTAGTACAGGAA-----CCAAGAAGGCCCTCTGGACTGTGAACTCTCAGAGAACGGGTGTTGTTCTCATGCACCCTCAGACCCCCAGCCTGGGGCAACACTGGGC s panTro4.chr1 224803572 499 + 228333871 ACTGAGGCCTTTTGATGATAAGAACTCACAAAGGG-TTTTAGATCAAGGGTGGCTTCATTGAAGAAACACCTCT--GACATCAGCCAGCAACCGCATTTTCATTAAAGACTCTCAATCTCAGCCTTTCCCTGGACGAGAGAGGAATGGCTTGTTGGCTACTTCCTGGC-----TGTCCGTGGCGGTCGTATCGATGGTGGGCCCAGCTGTG------CTGAATGGCTCTGTTGGTGCTCGCTGGGCTTGCTTTGGCTGGCACAGCTG--TGAGTGGAGGACAGCTGTGAGGAGCGGGAGTTGGTGCTGAT----GTCTTGTGAACCCCGGTGGAGCACTGAGCTCCAT---------GTATGTATGGATTGGTCCTGTGAGTCACTACAGACTGGGCTAGAGGTGGCAGCAGAGGCATGTGGCGT----------------TAGGTAGTACAGGAA-----CCAAGAAGGCCCTCTGGACTGTGAACTCTCAGAGAACGGGTGTTGTTCTCATGCACCCTCAGACCCCCAGCCTGGGGCAACACCGGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226163486 499 - 229942017 ACTGAGGCCTTTTGATGATAAGAACTCACAAAGGG-TTTTAAATCAAGGGTGGATTCATTGAAGAAACACCTCT--GACATCAACCAGCAACCGCATTTTCATTAAAGACTCTCAATCTCAGCCTTTCCCTGGACGAGAGAGGAATGGGTTGTTGGCTACTTCCTGGC-----TGTCTATGGCGGTCGTATTGATGGTGGGCCCAGCTGTG------CTGAATGGCTCTGTCGGTGCTCGCTGGGCTTGCTTTGGCTGGCACAGCTG--TGAGTGGAGGACAGCTGTGAGGAGCGGGAGTTGGTGCTGAT----GTCTTGTGAACCCTGGGGGAGCACTGAGCTCCAT---------GTATGTATGGATTGGTCCTGTGAGTCACTACAGACTGGGCTAGAGGTGGCAGCAGAGGCATGTGGCGT----------------TAGGTAGTCCAGGAA-----CCAAGAAGGCCCCCTGGACTGTGAACTCCCATAGAATGGGTAATGTTCTCATGCACCCTCAGACCCCCAGCCTGGGGCAACACTGGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140052801 499 - 143122389 ACTGAGGCCTTTTGATGATGAGAACTCACAAAGGG-TTTTAGATCAAGGGTGGCTTCATTGAAGAAACACCTCT--GACATCAACCAGCAACCACATTTTCATTAAAGACTCTCAATCTCAGCCTTTCCCTGGTCGAGAGAGGAATGGGTTGTTGTCTACTTCCTGGC-----TGGCTGTGGCGGTCGGATTGATGGTGGGCCCAGCTGTG------CTGAATGGCTCTGTTGGTGCTCGCTGGGCTTGCTTTGGCTGGCACAGCTG--TGAGTGGAGGACAGCTGTGAGGAGCTGGAGTTGGTGCTGAT----GTCTTGTGAACCCCGGGGGAGCACTGAGCTCCAT---------GTACGTACGGATTGGTCCTGTGAGTCATTACAGACTGGGCTAGAGATGGCAGCAGAGGCATGTAGCAT----------------TAGGTAGTCCAGGAA-----CCCAGAAGGccccctggactgtgaactcccagagaacgggtattgttctcatgcgccctcagacgcccagcctggggcaacaccgggg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16767853 501 - 229590362 ACTGAGGCCTTTTGATGATAAGAACTCACAAAGGG-TTTTAGATCAAGGGTGGCTTCATTGAAAAAACACCTCT--GACATCAGCCAGCAACCGCGTTTTCTTTAAAGACTCTCAATCTCAGCTTTTCCCTGGATGAGAGAGGAATGGGTTGTTGGCTACTTCCTGGC-----TGTCTGTGGTGGTCGTATGGCTGGTGGGCCCAGCTGTG------CTGAATGGCTGTGTTGGCGCTTGCTGGGCTCGCTTTGGCTGGCACGGATGCCTAAGTGGAGGACAGGTGTGAGGGGTGGGAGTTGGTGCTGAT----GTCTTGTGAACCCCGGGGGAGCGCTGAGCTCCAT---------GTATGTATGGATTGGTCCTGTGGGTCACTACAGACTGGGCTGGAGGTGGCAGCAGAGGCATGTGGCAT----------------TGGGTAGTCCAGGAA-----TCAAGAAGGccccctggactgtgaactcccagagaacgggtattgttctcgtgcaccctcagagccccagcctggggcaacgctgggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223530286 501 - 227556264 ACTGAGGCCTTTTGATGATAAGAACTCACAAAGGG-TTTTAGATCAAGGGTGGCTTCATTGAAAAAACTCCTCT--GACATCAGCCAGCAACCGCGTTTTCTTTAAAGACTCTCAATCTCAGCTTTTCCCTGGATGAGAGAGGAATGGGTTGTTGGCTACTTCCTGGC-----TGTCTGTGGTGGTCGTATGGCTGGTGGGCCCAGCTGTG------CTGAATGGCTGTGTTGGCGCTTGCTGGGCTTGCTTTGGCTGGCACGGATGCCTAAGTGGAGGACAGGTGTGAGGGGTGGGAGTTGGTGCTGAT----GTCTTGTGAACCCCGGGGGAGCACTGAGCTCCAT---------GTATGTATGGATTGGTCCTGTGGGTCACTACAGACTGGGCTGGAGGTGGCAGCAGAGGCATGTGGCAT----------------TGGGTAGTCCAGGAA-----TCAAGAAGGccccctggactgtgaactcccagagaacgggtattgttctcgtgcaccctcagagccccagcctggggcaacgctgggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16580098 501 - 220367699 ACTGAGGCCTATTGATGATAAGAACTCACAAAGGG-TTTTAGATCAAGGGTGGCTTCATTGAAAAAACACCTCT--GACATCAGCCAGCAACTGCGTTTTCTTTAAAGACTCTCAATCTCAGCTTTTCCCTGGATGAGAGAGGAATGGGTTGTTGGCTACTTCCTGGC-----TGTCTGTGGTGGTCGTATGGCTGGCGGGCCCAGCTGTG------CTGAATGGCTGTGTTGGCGCTTGCTGGGCTTGCTTTGGCTGGCACAGGTACCTAAGTGGAGGACAGGTGTGAGGGGTGGGAGTTGGTGCTGAT----GTCTTGTGAACCCCGGGGGAGCACTGAGCTCCAT---------GTATGTATGGATTGGTCCTGTGAGTCACTACAGACTGGGCTGGAGGTGGCAGCAGAGGCATGTGGCAT----------------TGGGTAGTGCAGGAA-----CCAAGAAGGCCCCCTGGACTGTGAACTCCCAGAGAATGGGTATTATTCTCGTGCACCCTCAGAGCCCCAGCCTGGGGCAACGCTGGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82379981 499 + 85787240 ACTGAGGCCTATTGATGATAAGAACTCACAAAGGG-TTTTAGATCAAGGGTGGCTTCATTGAAAAAACACCTCT--GACATCAGCCAGCAACCGCGTTTTCTTTAAAGACTCTCAATCTCAGCTTTTCCCTGGATGAGAGAGAAATGGGTTATTGGCTACTTCctggc-----tgtctgtggtggtcgtatggctggtgggcccacctgtg------ctgaatggctgtgttggcgcttgctgggcttgctttggctggcACAGGTG--TAAGTGGAGGACAGGTGTGAGGGGCGGGAGTTGGTGATGAT----GTCTTGTGAACCCCGGGGGAGCACTGAGCTCCAT---------GTATGTATGGATTCGTCCTGTGAGTCACTACAGACTGGGCTGGAGGTGGCAGCAGAGGCATGTGGCAT----------------TGGGTAGTGCAGGAA-----CCAAGAAGGccccctggactgtgaactcccagagaacgggtattgttctcgtgcaccctcagagccccagcctggggcaacgccgggc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14056981 489 - 49578535 ATCGAGGCCTTTTGATGTTAAGAACTCACAAAGGG-TTTTAGATCAAGGGTTGCTTAACTGAACGAACACCTCT--GACATCAGCCAACAACCACATACTTGTTAAAAACTCTCCATCTCAGCTTCTCCCTGGACAAGAGAGGAACGGGTTGT-----------TGGC-----TGTCTGTGGTGGTCATATTGATGGTGGGTTCAGCTGTGC----ACTGAA------TGTCGGTGCTGGCTGGGCTTGCTCTGGCTGGCACAGGTG--TGAGTGGAGGAGCGCCGTGAGGAGCGGGAGTTGGTGCTGAT----GCCTTGTCACCCCTGGGAGAGCACTGAGCTCCAT-GTGTCTGAGTATGTATG--TTGGTCCTGTGAGTCACTGCAGACTGTGCTAGAGGTGGCAGGAGAGGCATGAAGCAT----------------TAGATAGTCCAGGAA-----CCAGGAAGGccccatggactgtaagctcccagagtacgggtattgttctcatgtaccttcagaccccc-gcctggggcaatgcctggc i calJac3.chr19 I 348 C 0 s mm10.chr1 178675665 468 + 195471971 GTTGAAACCTAAGGATGGTACTAGCTATCGTAGGGCTTTTGAATCAAGAGCTGCTTAAGTGAAGAGACAGCTCTTGGTTACCAGCCAGCAAC-----------TGATGACTC-----ATTATCCTTCCTCTTCTGGAGATAGCAGTGGGTCACTGGCAACTTCTTGGC-----AGCCTGAGCCAAT-ATATTAGAAATAGGCCCAGCTGTGG----CATTAGCCGGTTTGCTGGCTGTCTTAGGTCTGGTATTGGTTG-----------TAGGTGGAAAAGAGTGTTAAGGATCTAGAGCCCTCAAAGAT----GGCTTGTAA--CTCAAAGAGCTACAGAGTTTCATAGTGT----GCCTGTGTTGATGGATCCTG-GAGTCACCTCAGATTAGACTAGAGG-GGCAGGAGAAGGGTGTGGCAT----------------TTGATAATCTAGAAG-----CCAAGAAGGCCTCCTGGA-TGTGACCTCACATAGGACAGGAGTTGT----------CCATAGCTTCACAGCTTGGTGTACTGATTGGC i mm10.chr1 C 0 C 0 s canFam3.chr7 36248724 440 + 80974532 ACTGAGGCC---------TAGGAACACACAGAGGA-TTTCAGATCAAGGGCTGCTTAATTTAGGGAATACCTCT--GACACCAGCCAGCGATTGCATAGTCATTAGTGAATC--AGTGCCAGCTTTCCTCTGGATGAGAGCACAGCAGCTCTTTG-CTACTTCCTGGCATCTGTGTCCGTGTTCATGGTAATGCCAGAGAGCCCCACTGCAGGGCTCATAGATGACTTCGTTGGTGCCT----------------------------------TGGGAACCAGGAGGGGAGCGCTGAAGTCCGTG----T----GTC-------------------------CTCCCA---------GTGTGTGTTTATTGGTCCTG------------------ACTGGTGGTGTTGGCAAAGGGACATAGGATCCAGAAGAAGACCATCTGGATGGTCTTGGGACCATCCCAAGAAGGTCCTTGggactgtgaactcgcagaagacaggagttgttttcatgcatccttaagtcctcagcctggtgcagggcttggc i canFam3.chr7 C 0 I 54 a score=363008.000000 s hg38.chr1_KI270759v1_alt 58461 116 + 425601 GTGCAGGAAACC-----------AAAGTCTCCGCTTGTTAAATGTCAGCAGCTGAGCCACAAATGGCAATAAGCTGAATAAAGAAGGTGGTGCTTCAAGGGAGAGGAGTAAAAACAAGGAAGAAAAG s panTro4.chr1 224804071 116 + 228333871 GTGCAGGAAACC-----------AAAGTCTCCGCTTGTTAAATGTCAGCAGCTGAGCCACAAATGGCAATAAGCTGAATAAAGAAGGTGGTGCTTCAAGGGAGAGGAGTAAAAACAAGGAAGAAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226163985 116 - 229942017 TTGCCGGAAACC-----------AAAGCACCTGCTTGTTAAATGTCAGCAGCTGAGCCACAAATGGCAATAAGCTGAATAAAGAAGGTGGTGCTTCAAGGGAGAGGAGTAAAAACAAGGAAGAAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053300 116 - 143122389 gtgccgggaacc-----------aaagtccctgcttgttaaatgTCAGCGGCTGAGCCACAAATGGCAATAAGCTGAATAAAGAAGGTGGTGCTTCAAGGGagaggagtgaaaacaaggaagaaaag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16768354 116 - 229590362 atgctggaaacc-----------aaaatacctacttattaaatgtCAGCAGCTGAGCCACAAATGGCAATATGCAGAATAAAGAAGGTGGTGCTTCAAGGGAGAGGAGTGAAATCAAGGGAGGAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223530787 116 - 227556264 atgctggaaacc-----------aaaatacctacttattaaatgtCAGCAGCTGAGCCACAAATGGCAATATGCAGAATAAAGAAGGTGGTGCTTCAAGGGAGAGGAGTGAAATCAAGGGAGGAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16580599 116 - 220367699 ATGCTGGAAAAC-----------AAAATACCTACTTATTAAATGTCAGCAGCTGAGCCACAAATGGCAATATGCTGAATAAAGAAGGTGGTGCTTCAAGGGAGAGGAGTGAAAtcaagggaggaaag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82380480 116 + 85787240 atgctggaaacc-----------aaaatacctacttattaaatgtCAGCAGCTGAGCCACAAATGGCAATATGCTGAATAAAGAAGGTGGTGCTTCAAGGGAGAGGAGTGAAATCAAGGGAGGAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14057470 113 - 49578535 acgctggaaacc-----------aaaacacctatttgttaaatgTCAGCACCTGAGCCACACATGACAGTAAGCTGAATGAAGAAGGTAGTGCTTCAAGGGAGAGTAGTAAAGAC---GAAGAAAAG i calJac3.chr19 C 0 I 291 s mm10.chr1 178676133 125 + 195471971 ACTTTGGAAGCTTATCAATTTAAAACATATCAATTTGTTAAATGTTGGAAACTGAGTTATAAATAGTAACAGGCTGAATATAGAAGGGATTACTTCAGGGAAGGGCAGTAAAAGTCA--AAGACAGG i mm10.chr1 C 0 C 0 e canFam3.chr7 36249164 54 + 80974532 I a score=54467.000000 s hg38.chr1_KI270759v1_alt 58577 16 + 425601 AGAAGAGGGGCCCTCA s panTro4.chr1 224804187 16 + 228333871 AGAAGAGGGGCCCTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164101 16 - 229942017 AGAAGGGGGGCCCTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053416 16 - 143122389 agaagagGCGCCCTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16768470 16 - 229590362 AGAAGAGGGGCCCTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223530903 16 - 227556264 AGAAGAGGGGCCCTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16580715 16 - 220367699 aaaagaggggcCCTCA i papAnu2.chr1 C 0 M 389 s chlSab2.chr25 82380596 16 + 85787240 AGAAGAGGGGCCCTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14057874 16 - 49578535 agaaGAGGGGTCCTCA i calJac3.chr19 I 291 C 0 s mm10.chr1 178676258 16 + 195471971 GGTGAAGGAGTTTTCA i mm10.chr1 C 0 C 0 e canFam3.chr7 36249164 54 + 80974532 I a score=121648.000000 s hg38.chr1_KI270759v1_alt 58593 52 + 425601 GAGCCAGGGATGGCT-CATGCGGTTTCTGGAGAGTGGTTGTGTCCCTAGGTCA s panTro4.chr1 224804203 52 + 228333871 GAGCCAGGGATGGCT-CATGCGGTTTCTGGAGAGTGGTTGTGTCCCTAGGTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164117 53 - 229942017 GAGCCAGGGATGGCTCCATGCGGTTTCTGGAGAGTGGATGTGTCCCTAGGTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053432 52 - 143122389 GAGCCAGGGATGGCT-CATGCAGTTTCTGGAGAGTGGATGTGTCTCTAGGTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16768486 52 - 229590362 GAACCAGGGGTGGCT-CATGCGATTTCTGGAGAGTGGATGTGTCCCTAGGTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223530919 52 - 227556264 GAACCAGGGGTGGCT-CCTGCGATTTCTGGAGAGTGGATGTGTCCCTAGGTCA i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82380612 52 + 85787240 GAGCCAGGGGTGGCT-CATGCGATTTCTGGAGAGTGGATGTGTCCCTAGGTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14057890 44 - 49578535 GAGCCAGGGATGGCT-CACGTGGTTTCTGGAGAGTGAATGC--------GTCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178676274 48 + 195471971 GAATCAGAG-TTGCT-CATGAG--CTCTGGAGGGCAGATGTGTTTCTGTGTC- i mm10.chr1 C 0 C 0 e canFam3.chr7 36249164 54 + 80974532 I e papAnu2.chr1 16580731 389 - 220367699 M a score=153124.000000 s hg38.chr1_KI270759v1_alt 58645 56 + 425601 GAGTCAAATCCAGA--CTCCAAGGGCTAGCGTTGGAAAT-----AAACTGTGATGTGCAGACA s panTro4.chr1 224804255 56 + 228333871 GAGTCAAATCCAGA--CTCCAAGGGCTAGCATTGGAAAT-----AAACTGTGATGTGCAGACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164170 56 - 229942017 GAGTCAAATCCAGA--CTCCAAGGGCTAGCATTGAAAAT-----AAACTGTAATGTGCAGACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053484 56 - 143122389 GAGTCAAATCCAGA--CTCCAAGGGCTAGCATTGAAAAT-----AAACTGTGATGTGTAGACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16768538 56 - 229590362 GAGCCAAATCCAGA--CTCCAAGGTCTAGCATCGAAAAT-----AAACTGTGATGTGCAGACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223530971 56 - 227556264 GAGCCAAATCCAGA--CTCCAAGGTCTAGCATCGAAAAT-----AAACTGTGATGTGCAGACA i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82380664 56 + 85787240 GAGCCAAATCCAGA--CTCCAAGGGCTAGCATCGAAAAT-----AAACTGTGATGTGCAGACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14057934 55 - 49578535 GAGTCAAATCCAGA--CTCCAAGGGCTAGCATCG-AAAT-----AAACTGTGATGTGCAGACA i calJac3.chr19 C 0 I 8 s mm10.chr1 178676322 59 + 195471971 -AATCAAATTTAGA--A-CCTACGCCTAGCACTCCAAATCCAAAATACCACGAAGTCTGCACA i mm10.chr1 C 0 C 0 s canFam3.chr7 36249218 52 + 80974532 AAGTTAAATTCAGGTTCTCTAAGG------ATCTAAAAT-----AAACTGTGATGGGTGAATG i canFam3.chr7 I 54 C 0 e papAnu2.chr1 16580731 389 - 220367699 M a score=-1986.000000 s hg38.chr1_KI270759v1_alt 58701 1 + 425601 -T s panTro4.chr1 224804311 1 + 228333871 -T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164226 1 - 229942017 -T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053540 1 - 143122389 -C i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16768594 1 - 229590362 -T i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531027 1 - 227556264 -T i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82380720 1 + 85787240 -T i chlSab2.chr25 C 0 C 0 s mm10.chr1 178676381 1 + 195471971 -T i mm10.chr1 C 0 C 0 s canFam3.chr7 36249270 1 + 80974532 G- i canFam3.chr7 C 0 C 0 e calJac3.chr19 14057989 8 - 49578535 I e papAnu2.chr1 16580731 389 - 220367699 M a score=20475.000000 s hg38.chr1_KI270759v1_alt 58702 8 + 425601 GACTTCTC s panTro4.chr1 224804312 8 + 228333871 GACTTCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164227 8 - 229942017 GACTTCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053541 8 - 143122389 GACTTCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16768595 8 - 229590362 GACTTCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531028 8 - 227556264 GACTTCTC i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82380721 8 + 85787240 GACTtctc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178676382 8 + 195471971 GACTTTTC i mm10.chr1 C 0 I 119 e canFam3.chr7 36249271 0 + 80974532 C e calJac3.chr19 14057989 8 - 49578535 I e papAnu2.chr1 16580731 389 - 220367699 M a score=13570.000000 s hg38.chr1_KI270759v1_alt 58710 28 + 425601 ACCCTCTCTCTCTCTC---tttttttttttt s panTro4.chr1 224804320 26 + 228333871 ACCCTCttttttttt-----ttttttttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164235 26 - 229942017 ACTCTCTCTCTCTCT-----Ctttttttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053549 31 - 143122389 ACTCTCTTTCTCTCTCttttttttttttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16768603 20 - 229590362 TCTCTCTCTCTCttt-----ttttt------ i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531036 15 - 227556264 TCTCTCTC-----tt-----ttttt------ i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82380729 26 + 85787240 tctctctctctctct-----ctctctctctc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178676390 119 + 195471971 I e canFam3.chr7 36249271 0 + 80974532 C e calJac3.chr19 14057989 8 - 49578535 I e papAnu2.chr1 16580731 389 - 220367699 M a score=58107.000000 s hg38.chr1_KI270759v1_alt 58738 27 + 425601 tttttttttttgagatggagtcttgct s panTro4.chr1 224804346 27 + 228333871 tttttttttttgagatggagtcttgct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164261 27 - 229942017 tttttctctttgagatggagtcttgct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053580 27 - 143122389 tttttttttttGAGAAGGAGTCTTGCT i nomLeu3.chr5 C 0 I 108 s rheMac3.chr1 16768623 27 - 229590362 tttttttttttgagatgaaatcttgct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531051 27 - 227556264 tttttttttttgagctgaaatcttgct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16581121 27 - 220367699 tcttcttttttgagatgaaatcttgct i papAnu2.chr1 M 389 C 0 s chlSab2.chr25 82380755 27 + 85787240 tctctctttttgagatgaaatcttgct i chlSab2.chr25 C 0 C 0 e mm10.chr1 178676390 119 + 195471971 I e canFam3.chr7 36249271 0 + 80974532 C e calJac3.chr19 14057989 8 - 49578535 I a score=86270.000000 s hg38.chr1_KI270759v1_alt 58765 51 + 425601 ctgttgccaggctggagtgcagtggtgtgatcttggctc------acctctgcctcc s panTro4.chr1 224804373 51 + 228333871 ctgtcaccaggctggagtgcagtggcgtgatcttggctc------acctctgcctcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164288 51 - 229942017 ctgttgccaggctggagtgcagtggtgtgatcttggctc------acctctgccttc i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16768650 57 - 229590362 ctgttgcctggctggagtgcagtggcatgatcttggttcactgcaacctccacctcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531078 57 - 227556264 ctgttgcctggctggagtgcagtggcatgatcttggttcactgcaacctccacctcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16581148 57 - 220367699 ctgttgcctggctggagtgcagtgacatgatcttggttcactgcaacctccgcctcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82380782 57 + 85787240 ctgttgccaggctggagtgcagtggcatgattttggctcactgcaacctccgcctcc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178676390 119 + 195471971 I e canFam3.chr7 36249271 0 + 80974532 C e calJac3.chr19 14057989 8 - 49578535 I e nomLeu3.chr5 140053607 108 - 143122389 I a score=201087.000000 s hg38.chr1_KI270759v1_alt 58816 121 + 425601 cgtgttcaagtcattctcctgcctcagcctgctgaattgctgggactacaggcgcccgccaccacgcccagctaatttttttgtattttagtacagat---ggtgtttcaccatgttggccagg s panTro4.chr1 224804424 121 + 228333871 tgtgttcaagtcattctcctgcctcagcctcctgaattgctgggactacaggcgcccgccaccacgcccagctaatttttttgtattttagtagagat---ggtgtttcaccatgttggccagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164339 121 - 229942017 cgtgttcaagtgattctcttgcctcagcctcctgaattgctgggactacaggtacccgccaccacgcccagctaatttttttgtattttagtagagat---ggtgtttcaccatgttggccagg i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16768707 121 - 229590362 tgggttcaagcgaatctcccgcttcagcctcccaagtagctgggactacaggtgcgcgccaccacacctggctaattttttcctattttagtagaaat---ggggtttcaccatgttggccagg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531135 121 - 227556264 tgggttcaagcgaatctcccgcttcagcctcccgagtagctgggactacaggtgcgcgccaccacacctggctaattttttcctattttagtagaaat---ggggtttcaccatgttggccagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16581205 121 - 220367699 tgggttcaagcgaatctcacgcttcagcctcccgagtagctgggactacaggtgtgcgccaccacacctggctaattttttcctattttagtagaaat---ggggtttcaccatgttggccagg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82380839 121 + 85787240 tgggttcaagtgaatctcccgcctcagcctctcgagtagctggtactacaggtgcgcgccaccacgcctggctaattttttcctatttcagtagaaat---ggggtttcaccatgttggccagg i chlSab2.chr25 C 0 C 0 s mm10.chr1 178676509 120 + 195471971 cttaaacagttggtccttctacctccccttcctgaatc-ctgaaacagaaggcttccattaccacttcaggtttatatg---gtgccctgggtcaaacccatggctttgggcatgtttgccaag i mm10.chr1 I 119 I 297 e canFam3.chr7 36249271 0 + 80974532 C e calJac3.chr19 14057989 8 - 49578535 I e nomLeu3.chr5 140053607 108 - 143122389 I a score=35925.000000 s hg38.chr1_KI270759v1_alt 58937 20 + 425601 atggtctcga--tctcctgacc s panTro4.chr1 224804545 20 + 228333871 atggtctcga--tctcctgacc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164460 20 - 229942017 atggtctcga--tctcctgacc i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16768828 22 - 229590362 atggtctcgatctctcctgacc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531256 22 - 227556264 atggtctcgatctctcctgacc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16581326 22 - 220367699 atggtctcgatctctcctgacc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82380960 22 + 85787240 atggtctcgatctctcctgacc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178676629 297 + 195471971 I e canFam3.chr7 36249271 0 + 80974532 C e calJac3.chr19 14057989 8 - 49578535 I e nomLeu3.chr5 140053607 108 - 143122389 I a score=175972.000000 s hg38.chr1_KI270759v1_alt 58957 71 + 425601 ttgtgatccgcctgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggcTGAAAT s panTro4.chr1 224804565 71 + 228333871 ttgtgatccgcctgcctcggcctcccaaagtgctgggattacaggcatgagccaccacgcccggcTGAAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164480 71 - 229942017 ttgtgatccgcccgcctcggcctccgaaagtgctgggattacaggcatgagccaccgtgcccggctGACAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053715 71 - 143122389 TTgtgatcctcctgcctcagccttccaaagtgttgggattacaggcatgagccaccacgcccggcTGACAT i nomLeu3.chr5 I 108 C 0 s rheMac3.chr1 16768850 71 - 229590362 ttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcTGACAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531278 71 - 227556264 ttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcTGACAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16581348 71 - 220367699 ttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggctgacat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82380982 71 + 85787240 ttgtgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccagcTGACAT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178676629 297 + 195471971 I e canFam3.chr7 36249271 0 + 80974532 C e calJac3.chr19 14057989 8 - 49578535 I a score=19504.000000 s hg38.chr1_KI270759v1_alt 59028 7 + 425601 GACTTCT s panTro4.chr1 224804636 7 + 228333871 GACTTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164551 7 - 229942017 GACTTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053786 7 - 143122389 GACTTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16768921 7 - 229590362 GACTTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531349 7 - 227556264 GACTTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16581419 7 - 220367699 GACTTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82381053 7 + 85787240 GACTTCT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36249271 7 + 80974532 GACCAAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178676629 297 + 195471971 I e calJac3.chr19 14057989 8 - 49578535 I a score=454818.000000 s hg38.chr1_KI270759v1_alt 59035 128 + 425601 CTTAGAGCTGCCTCCTTTCTGTGGCACCTCTTCCATA----TGATTGGGTTAGTAAAAATATTCTAAATAAGCAATTGATTTGAGGCTTTTTGAAGCCAAACAGTTTGGTGCCTTGAGAGCATAAGCCATTG s panTro4.chr1 224804643 128 + 228333871 CTTAGAGCTGCCTCCTTTCTGTGGCACCTCTTCCATA----TGATTGGGTTAGTAAAAATATTCTAAATAAGCAATTGATTTGAGGCTTTTTGAAGCCAAACAGTTTGGTGCCTTGAGAGCATAAGCCATTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164558 132 - 229942017 CTTAGAGCTGCCTCCTTTCTGTGGCACTTCTTCCATATGATTGATTGGGTTAGCAAAAATATTCTAAATAAGCAATTGATTTGAGGCTTTCTGAAGCCAAACAGTTTGGTGCCTTGAAAGCATAAGCCATTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053793 128 - 143122389 CTTAGAGCTGCCTCCTTTCTGTGGCACTTCTTCCATG----TGATTGGGTTAGCAAAAATATTCTAAATAAGCAATTGATTTGAGGCTTTTTGAAGCCAAAGAGTTTGGTGCCTTGAAAGCATAAGCCATTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16768928 128 - 229590362 CTTAGAGCTGCCTCCTTTCTGTGGCACTTCCTCCGTA----TGATTGGGTTAACAAAAATATTCTAAATAAGCAACTGATCTGAGGCTTTTTGAAACCAAACAGTTTGGTGCCTTGAAAGCATAAGCCATTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531356 128 - 227556264 CTTAGGGCTGCCTCCTTTCTGTGGCACTTCCTCCGTA----TGATTGGGTTAACCAAAATATTCTAAGTAAGCAACTGATCTGAGGCTTTTTGAAACCAAACAGTTTGGTGCCTTGAAAGCATAAGCCATTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16581426 128 - 220367699 CTTAGAGCTGCCTCCTTTCTGTGGCACTTCCTCCGTA----TGATTGGGttaacaaaaatattctaaataagcAACTGATCTGAGGCTTTTTGAAACCAAACAGTTTGGTGCCTTGAAAGCATAAGCCATTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82381060 128 + 85787240 CTTAGAGCTGCCTCCTTTCTGTGGCACTTCCTCCATA----TGATTGGGTTAACAAAAATATTCTAAGTAAGCAACTGATCTGAGGCTTTTTGAAACCAAACAGTTTGGTGCCTTGAAAGCATAAGCCATTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14057997 126 - 49578535 CTTACAGCTGCCTCCTTTCTGTGGCACTTCTTCCATA----TGATTGGGTTA-CAAAAATATTCTAAATAAGCAATTGAT-TGCAGCTTCTTGAAACCAAACAGTTTGGTGCCTTGAAAGCATAAGCCACTG i calJac3.chr19 I 8 C 0 s canFam3.chr7 36249278 128 + 80974532 CTTATCACTGCCTCCTCACTGTGACACTTCTTCCTGA----TGGTTGAGTTAACACAAATATTCTAAATCAACACTTCATTTGCAGTGTCTTGAAACCAAATAGCTTGCTGCCTTGAAAGCATAAGCCGTGG i canFam3.chr7 C 0 I 356 e mm10.chr1 178676629 297 + 195471971 I a score=3236004.000000 s hg38.chr1_KI270759v1_alt 59163 992 + 425601 -----CTTATGTGAAAAAAAACAAGAAACTGTATCTTTGCATATACTGGGGCCCAAATAAATCCCGTTTGAA-TGAATGAACATTTCCTAGTGAAAACATGG---GGCTGGAACCCTTCTGTGTCCGTG-GGAAAATAGGAATCTATTGATGGAT-ATGGCTCTTTGG--CTTAAAGTGAAAAATCATGAACTGGTG----GTCAAGA-AATCTA-GGCATAGTCCACGCTTTTAACCCTCTGGGACC------TGTTTTTCT-GTAAACTGAGGTGACGCTCTGTTCTGGAACAG-CCCCTAAGGGGCCG--------TTTCAGGTCCTGCTACACGCTCTGAGTTGTGATTAGAGACTCTCTGGCC-------CTGTCATCGAGGAGGACGCCTCGAGACAGGCCTCATATGGTTTGCATCACTTCCTCAA-------CCAGACTCGCTCAACCTGAACCTCCCATTGCTTCCCATCATTGTGTCTGGCTGTCTTGAGTGTCTCCCTCCTGAGCCACCCCT---TGCTGCTGCAGTGTAAAGAGGCCTCTTGATTTATTAATCAATTAATCAGTGCGTGCTGAGGAGCTGTTCGGGGTAGTTAAACAGGGAAAACAAACAGCTGGAGCCTGCAATCAAGATGGATCCTAATTAAGAACCACCCCCCAAATG-CTGATCTTCCTG-CCCCG--TCACTGCCTCACAACTCCCCCCCACCAGCCTACAGCTCAG-CAAACCGCCTTCAGCTCTGATGGGGCTTCTACCCCATGCAAG---------------CTGACAGTGAATTTCCGAAGGG-----CAGATTTTCTCCCTAATGTCCTAGAGGT-AAATAAGCCTTGAGATGAGCGTTATCAATTACCTGCAACGACTGTTGAG--------------------CCCCCAA-ATGGCGTAGTAGCCCTGTTCATATAGGCACAGCCCACACTCTCCTATCCCAGTTCCCCCACGA---ACGGAGTCATGGAGCTGGAAGGTCCTTACGATAAGGAGAGGCCATGGC-GCTGTG-GACAGACGAgaggttcagtgaggttcagtgagttgtctgaggtcac-tgc s panTro4.chr1 224804771 978 + 228333871 -----CTTATGTGAAAAAAAATAAGAAACTGTATCTTTGCATATACTGGGGCCCAAATAAATCCCGTTTGAA-TGAATGAACATTTCCTAGTGAAAACATGG---GGCTGTAACCCTTCTGTGTCCGTG-GGAAAATAGGAATCTATTGATGGAT-ATGGCTCTTTGG--CTTAAAGTgaaaaatcatgaactggtg----gtcaaga-aatcta-ggcatagtccacgcttttaaccctctgggacc------tGTTTTTCT-GTAAACTGAGGTGACGCTCTGTTCTGGAACAG-TCCCTAAGGGGCTG--------TTTCAGGTCCTGCTACACGCTCTGAGTTGTGATTAGAGACTCTCTGGCC-------CTGTCATCGAGGAGGACGCCTCGAGACAGGCCTCATATGGTTTGCATCACTTCCTCAA-------CCAGACTCGCTCAACCTGAACCTCCCATTGCTTCCCATCATTGTGTCTGGCTGTCTTGAGTGTCTCCCTCCTGAGCCCCCCCT---TGCTGCTGCAGTGTAAAGAGGCCTCTTGATTTATTAATCAATTAATCAGTGCGCGCTGAGGAGCTGTTCAGGGTAGTTAAACAGGGAAAACAAAAAGCTGGAGCCTGCAATCAAGATGGATCCTAATTAAGAACCACCCCC-AACTG-CTGATCTTCCTG-CCCCG--TCACTGCCTCACAACTCCCTCCCC---GCCTACAGCTCAG-CAAACCGCCTTCAGCTCTGATGGGGCTTCTACCCCATGCAAG---------------CTGACAGTGAATTTCCGAAGGG-----CAGATTTTCTCCCTAATGTCCTAGAGGT-AAATAAGCCTTGAGATGAGCATTATCAATTACCTGCAACAACTGTTGAG--------------------CCCCCAA-ATGGCGTAGTAGCCCCGTTCATATATGCACAGACCACACTCTCCTATCCCAGTTCCCCCACGA---ATGGAGTCATGGAGCTGGAAGGTCCTTACGATAAGGAGAGGCCATGGT-GCTGTG-GACAGACgagaggttcagtgag----------ttgtctgaggtcac-tgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226164690 989 - 229942017 -----GTTATGTG-GAAAAAACAAGAAACTGTATCTTTGCGTATAGTGGGGCCCAAATAAATCCCGTTTGAA-TGAATGAACATTTCCTAGTGAAAACATGG---CGCTGG-ACCCTTCTGTGTCTGTG-GGAAAGTAGGAATCTATTGATGGAT-ATGGCTCTTTGG--CTTAAAGTGAAAAATCATGAACTGGTG----GTCAAGA-AATCTA-GGCATAGTCCACGCTTTTAACCCTCTGGGACC------TGTTTTTCT-GTAAACTGAGGTGACGCTCTGTTCTGGAACGG-TCCCTGAGGGGCCC--------TTTCAGGTCCTACTGCGCGCTATGAGTTGTGATTAGAGACTCTCTGGCG-------CTGTCATCGAGGAGGACGCCTCTAGGCAGGCCTCATATGGTTTGCATCACTTCCTCAA-------CCAGACTCACTCAACCTGAACCTCCCATTGCTTCCCATCATTGTGTCTGGCTGTCTTGAGTGTCTCCCTCCTGAGCCACCCCT---TGCTGCTGCAGTGTAAAGAGGCCTCTTGATTTATTAATCAATTAATCAGTGCGCGCTGAGGAGCTGTTCAGGGTAGTTAAACAGGGAAAACAAAAAGCTGGAGCCTGTAATCAAGATGGATCCTAATTAAGAACCACCCCCCAACTG-CTGATCTTCCTGTCCCCG--TCACTGTCTCACAACTCCCTCCCC---GCCTACAGCTCAG-CAAACTGCCTTCAGCTCTGATGGGGCTTCTACCCCATACAAG---------------CTGACAGTGAGTTTCCGAAGGG-----CAGATTTTCTCCCTCATGTCCTGGAGGT-AAATAAGCCTTGAGATGAGCATTATCAATTACCTGCAACAACTGTTAAG--------------------CCCCCCA-GTGGCATAGCAGCCCTGTTCATATATGCACAGACCACACTCTCCTATCCCATTTCGCCCACGA---ATGGAGTCATGGAGCTGGAGGGTCCTTACGATAAGGAGAGGCCGTGGC-CCTGTGTGACAGACGGgaggttcagtgaggttcagtgagttgtctgaggtcac-tgc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140053921 990 - 143122389 -----GTTATGTGAAAAAAAACAAGAAACTGTATCTTTGCATATACTGGGGCCCACATAAATCCCGTTTGAA-TGAATGAACATTTCCTAGTGAAAACATGG---GGCTGGAACCCTTCTGTGTCTGTG-GGAGAATGGGAATCTATTGATGGAT-ATGGCTCTTTGG--CTTAAAGTGAAAAATCATGAACTGGTG----GTCAAGA-AATCta-ggcatagtccacacttttaaccctctgggacc------tgtttatct-gtaaactgaggtgacgctgtgttctggaacgg-tccctaaggggccc--------tttcaggtcctactgcacgctctgagttgtgattAGAGA--CTCTGGCC-------CTGTCATTGAGGAGAACGCCTCGAGGCAGGCCTCATACGGTTTGCATCACTTCCTCAA-------CCAGACTCGCTCAACCTGAACCTCCCATTGCTTCCCATCATTGTGTCTGGCTGTCTTGAGTGTCTCCCTCCTGAGCCACCCCT---TGCTGCTGCAGGGTAAAGAGGCCTCTTGATTTATTAATCAATTAATCAGTGCATGCTGAGGAGCTATTCAGGGCAGTTAAACAGGGAAAACAAAAAGCTGGAGCCTGTAATCAAGATGGATCATAATTAAGAACCACCCCCCAACTG-CTGGTCTTCCTGCCCCCG--TCACTGCCTCACAACTCCCTCCCT---GCCTACAGCTCAG-CAAACCGCCTTCAGCTCTGATGGGGCTTCTACCCCATACAAG---------------CTGACAGTGAATTTCAGAAGGG-----CAGATTTTCTACCTAATGTCCTGGAGGT-AAATAAGCCTTGAGATGAGCGTTATCAATTACCTGCAACAACTGTTGAAC-------------------CCCCCAA-ATGGCGTAGTAGCCCTGTTCATATACGCACAGACCACACTCTCCTATCCCCGTTCCCCCACGA---ATGGAgtcatggagctggaaggtccttacgataaggagaggccatggc-cctgtgtgacagacgagaggttcggtgaggttaagtgagttgcctgaggtcac-tgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16769056 973 - 229590362 -----GTTATGTG-AGAAAAACAAGAAACTGTATCTTTGCGTATATTGGGGCAC----AAATCCCGTTTGAA-TGAATGAACATTTCCTGGTGAAAACATGG---GGTTGGAACCCTTCTGTGTCTGTG-AGAGAATAGGAATCTGTTGATGGAT-ATGGCTCTTTGG--CTTAAAGTGAAAAATCATGAACTGGTG----GTCAAGA-AGTCTA-GGCATAGTCCACGCTTTTAACCCTCTGGGACC------TGTGTATCT-GTAAACTGAGGTGACACTGTGTTCTGAAACGG-TCCCTGAGGGGCCC--------TTTCAGGTCCTGCTACAC-CTCTGAGTTGTGATTGGAGACTCGCTGGCC-------CTGTCACTGAGGAAGTCACCTCGAG------------------GCATCACTTCCTCAATGAGATTCGAGGCTCGCTGGACCTGAACCTCCCGCCGCTTCCCATCATTGTGTCTGGCTGTCTT--GTGTCTCCCTCCTGAGCCACCCCT---TGCTGCTGCAGTGTGAGGAGGCCTCTTGATTTATTAATCAATTAATCAGTGCACACTGAGGGGCTGTTCAGGGTAGTTAAACAGGGAAAACAAAAAGCTGGAGCCTGTAATCAAGATGGATCATAATTAAGAACCACCCCCCAACTG-CTGCTCTTCCTG-CCCCG-CTCACTGCCTCACAGCTCCCTCCCC---GCCTACAGCTCAT-CAAACCGCCTTCAGCTCTGATGGGGCTTCTACCCCATACAAG---------------CCGACAGTGAATTTCAGAAGGG-----CCCATTTTCTCCCTAATGTCCTAGAGGGAAAATAAGCCCTTAGATGAGCTTTATCCATTACCTGCAACGACCGTTGAGC-------------------CCCCAAA-ATGGCATCGTAGCCCTGTTCATGTATGCACAGACCATACTCTCCTCTCCCCATTC-CCCATGA---ATGGAGTCATGGAGCTGGAAGGTCCTTCCCATCAGGAAAGGCCATGGc-cctgtgtgacagacgagaggttcagtgaggctaagtgagttgtctgaggtcac-tac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223531484 972 - 227556264 -----GTTATGTG-AGAAAAACAAGAAACTGTATCTTTGCGTATATTGGGGCAC----AAATCCCGTTTGAA-TGAATGAACATTTCCTGGTGAAAACATGG---GGTTGGAACCCTTCTGTGTCTGTG-AGAGAATAGGAATCTGTTGATGGAT-ATGGCTCTTTGG--CTTAAAGTGAAAAATCATGAACTGGTG----GTCAAGA-AGTCTA-GGCATAGTCCACGCTTTTAACCCTCTGGGACC------TGTGTATCT-GTAAACTGAGGTGACACTGTGTTCTGAAACGG-TCCCTGAGGGGCCC--------TTTCAGGTCCTGCTACAC-CTCTGAGTTGTGATTGGAGACTCGCTGGCC-------CTGTCACTGAGGAAGTCACCTCGAG------------------GCATCACTTCCTCAATGAGATTCGAGGCTCGCTGGACCTGAACCTCCCGCCGCTTCCCATCATTGTGTCTGGCTGTCTT--GTGTCTCCCTCCTGAGCCACCCCT---TGCTGCTGCAGTGTGAGGAGGCCTCTTGATTTATTAATCAATTAATCAGTGCACACTGAGGGGCTGTTCAGGGTAGTTAAACAGGGAAAACAAAAAGCTGGAGCCTGTAATCAAGATGGATCATAATTAAGAACCACCCCCCAACTG-CTGCTCTTCCTG-CCCCG-CTCACTGCCTCACAGCTCCCTCCCC---GCCTACAGCTCAT-CAAACCGCCTTCAGCTCTGATGGGGCTTCTACCCCATACAAG---------------CCGACAGTGAATTTCAGAAGGG-----CCCATTTTCTCCCTAATGTCCTAGAGGG-AAATAAGCCCTTAGATGAGCTTTATCCATTACCTGCAACGACTGTTGAGC-------------------CCCCCAA-ATGGCATTGTAGCCCTGTTCATGTATGCACAGACCATACTCTCCTCTCCCCATTC-CCCATGA---ATGGAGTCATGGAGCTGGAAGGTCCTTCCCATCAGGAAAGGCCATGGc-cctgtgtgacagacgagaggttcagtgaggctaagtgagttgtctgaggtcac-tac i macFas5.chr1 C 0 I 319 s papAnu2.chr1 16581554 972 - 220367699 -----GTTatgtg-agaaaaacaagaaagtataTCTTTGCATATATTGGGGCAC----AAATCCcgtttgaa-tgaatgaacatttcCTGGTGAAAACATGG---GGTTGGAACCCTTCTGTGTCTGTG-GGAGAACAGGAATCTGTTGATGGAT-ATGGCTCTTTGG--CTTAAAGTGAAAAATCATGAACTGGTG----GTCAAGA-AGTCTA-GGCATAGTCCACGCTTTTAACCCTCTGGGACC------TGTGTATCT-GTAAACGGGGGTGACGCTGTGTTCTGGAACGG-TCCCGGAGGGGCCC--------TTTCAGGTCCTGCTACAC-CTCTGAGTTGTGATTGGAGACTCGCTGGCC-------CTGTCACTGAGGAAAACACCTCGAG------------------GCATCACTTCCTCAATGAGATTCGAGGCTCGCTGGACCTGAACCGCCCACTGCTTCCCATCATTGTGTCTGGCTGTCTT--GTGTCTCCCTCCTGAGCCACCCCT---TGCTGCTGCAGTGTGAAGAGGCCTCTTGATTTATTAATCAATTAATCAGTGCACACTGAGGAGCTGTTCAGGGTAGTTAAACagggaaaacaaaaagctggAGCCTGTAATCAAGATGGATCATAATTAAGAACCACCCCCCAACTG-CTGCTCTTCCTG-CCCCG-CTCACTGCCTCACAGCTCCCTCCCC---GCCTACAGCTCAT-CAAACCGCCTTCAGCTCTGATGGGGCTTCTACCCCATACAAG---------------CCGACAGTGAATTTCAGAAGGG-----CCCATTTTCGCCCTAATGTCCTAGAGGG-AAATAAGCCCTTAGATGAGCTTTATCCATTACCTGCAACGACCGTTGAGC-------------------CCCCAAA-ATGGCATTGTAGCCCTGTTCATGTATGCACAGACCATACTCTCCTCTCCCCATTC-CCCATAA---ATGGAGTCATGGAGCTGGAAGGTCCTTCCCATCAGGAAAGGCCATGGC-CCTGTGTGACAGACGAGAGGTTCAGTGAGGCTAAGTGAGTTGTCTGAGGTCAC-TAC i papAnu2.chr1 C 0 I 322 s chlSab2.chr25 82381188 975 + 85787240 -----GTTATGTG-AGAAAAACAAGAAACTGTATCTTTGCATATGTTGGGGCACAAATAAATCCCGTTTGAA-TGAATGAACATTTCCTGGTG-AAACATGG---GGTTGGAGCCCTTCTGTGTCTGTG-GGAGAATAGGAATCTGTTGATGGAT-ATGGCTCTTTGG--CTTAAAGTGAAAAATCATGAACTGGTG----GTCAAGA-AGTCta-ggcatagtccacgcttttaaccctctgggacc------tgtgtatct-gtaaactgaggtgacgctttgttctggaatgg-tccctaaggggccc--------tttcaggtcCTGCTACAC-CTCTGAGTTGTGGTTGGAGACTCGCTGGCC-------CTGTCACTGAGGAAGACACCTCGAG------------------GCATCACTTCCTCAATGAGATTCGAGGCTCGCTCGACCTGAACCTCCCGCCGCTTCCCATCATCGTGTCTGGCTGTCTT--GTGTCTCCCTCCTGAGCCACCCCT---TGCTGCCGCAGTGTAAAGAGGCCTCTTGATTTATTAATCAATTAATCAGTGCACACTGAGGAGCTGTTCAGGGTAGTTAAACAGGGAAAACAAAAAGCTGGAGCCTGTAATCAAGATGGATCATAATTAAGAACCACCCCCTAACTG-CTGCTCTTCCTG-CCCCG-CTCGCTGCCTCACAGCTCCCTCCCC---GCCTACAGCTCAT-CAAACTGCCTTCAGCTCTGATGGGGCTTCTACCCCATACAAG---------------CCGACAGTGAATTTCAGAAGGG-----CCGATTTTATCCCTAATATCCTAGAGGA-AAATAAGCCTTTAGATGAGCTTTATCCATTACCTGCAACGACCGTTGAGC-------------------CCCCAAA-ATGGCATCGTAGCCCTGTTCATGTATGCACAGACCATACTCTCCTCTCCCCATTC-CCCATGA---ATGGAgtcatggagctggaaggtccttaccatcaggaaaggccatggc-cctgtgtgacagacgagaggttcagtgaggttaagtgagttgtctgaggtcac-tac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14058123 983 - 49578535 -----GTTATGTG--AAAACAGAGGAAACTGTATCTTTGCATATATTGGGGCCCAAATACATTTCATTTGCA-TAAATGAACACTTCCTGGTAAAAACTTGG---GGGTGGAAACCTTCTG-GTCTGTG-GGAGAATGTGAACCTCTGGATGGATAATGGCTCTTTGG--CTTAGGGTGAAAAATCACATACTGGT-----GTTAAGA-AGTCTA-GCCATAGTCCAcac-tttaaccctctgggacc------tgttcatct-gtaaactgaggtggtgctctgttctggaacgg-tccctaaagggcct--------ttgcaggtcCT-----AAGCTCTGAGTTGTGATTAGAACCTCTCCGGCC-------CTGTCATTGAGAAGGACGCC-CGAGGCAGGCCTCATGTGGCTTGCATCACTTCCTCAA-------GGAGACTCGATCAGCCTTCACCGCCCA-TGCTTCCCGCCATTGTGACTGTCT-------GTGTCTCTGTCCTGAGCCGCTCGC---TGCTGCTGCAGTAGAAAGAGGCCTCTT-ATTAATTCATCGATTAATCAGTGCGTGCTGAGGAGCTGTTCAGGGCAGTGAAACAGGGAACACAAAACGCTAGAGCCTGTAGTCAAGACAGATCGTAATTAAG-ACAACCCCCAAACTG-CTGGTCTTCCTG-CCCCC--TC-----CCCACACCATTCTCCCT---GCCTAC-GCTCAT-CAAACCCCATTCAGCTCTAAAGGGGCTTCTACCCCATAAAAG---------------CTGACAGTGAATTTCAGAAAGG-----CACATTTTCTCCCCAATGGCCTGGGGGT-AAATAAGCCTTGAGATGAGTTTTGTCAATTATCTGCAACAACTGTTGAACCTCAGACGGTC-ACCCAGGTCCCCAA-ATGGCATAGTAGCCCTGTTCATATATGCACAGGCCAGACTCTCCAGTCCCAATTTCCCCATGA---atggagttacggagctggaaggtccttacagtaaggataggccgtgac-cctgtgtggcagatgagaggctcagtgagattcagtaagttgcccaaggtcac-tac i calJac3.chr19 C 0 C 0 s mm10.chr1 178676926 982 + 195471971 -----GTCATGTG--GCAAAGCAATAAACTATTTCGTGACATATGGGGGGGCAT--ATAAATGCCTTTTGAATTAAATGAACATTTCCTA-TAAAA----------------------------CTGTG-AAA-------AGCCCAC--ACGGAT-GT-GTTCTTTGACTCTTGAAGTGAACAATCATGGACAAGTGAGTAGTCAAGACGGTCCACAGTACAGCGCAGGTTGT--ATCCAAAAGGATC------TGCTTTTGTGGTAAACTGAGGTGACAGTCTCCTCTAGAATGGCCCCCTCAGGGGTTC--------TTTCGGGTCCCAC-ATGC-TTTTGAGCTGTGATTAAGGACTGCCTGGACAAAGCAGCTGTCACCGAGCAGGCCCCCACAGT--GAGCCTTGTCTGGTTTGCAAGGCTTTTCCAG------GCGGAACCCAATC-ATCTCAGCCTCCCAGCGC-TCCAGCCACTTTATA-GGCCGCCTTGAGTTTCTGCCTCCCGAGCC-TTGCT---CGATGCTGCTCTGTGAAGAGGCCTCTTGATTTATTAATCAATTAATCAGTGCACACCGAGGAGCTGCTCAGGGTAGTTAAACAGGGAAAACAAAACGCTGGGGTCCATCACGCAGACAGATTGTGATTAGGAACAAACCTCCCACTGACCGATCTTCCTG-CCCA---CCATGGCTGCATGGCTGC--CCCG---AGTTACCTTTCAGACATGCTAC--TCCGTCCAGAT-GGGCCTCAGATCTATA-AAA---------------CTGACACTGTTTTTCTGAAGGGTGATATATATATGTATTTTTGCATCCTTGAAGA-AAATGACTCCAAAGATGAGCCTCATTCATTCCTCATAATAACTGTTGAGCCTTGCAAACTC-TGCCAGGCCCCAAACATGCTGTGGTGGGTCTGTTCATCTGTGCATGGGCAGAGCTGTGCCATCCCACTTTCCCCACGAGGGAAGAAGTCCTAGGGCTGAAAGGATAGCTCAGCAAAGGCAGGGCGCAGTGGCTGCATGACTGAGGAGAGGTTCCGTGTG-CTGAGTGCCTTATCTAAGGGTACATG- i mm10.chr1 I 297 C 0 s canFam3.chr7 36249762 1028 + 80974532 CTCATGTAATATG--AAAAAGCAAGAaactgtaacttggcacatatggaggcgcaaataaatttattttgaa-taaatgaaCATTTTCTAG-------ATGGATAAGGTGGAAACTTTATAGGTCTGTGCGAAAAATATGAGTCCGTTGATGAAT-ATGACTCTTTGG-------ATCTGGAAATCATGGACTAGTG----GTGGAGA-AGTCTG-GGTGCAGTCcaagcttttaactcttttggagctcagtttccttatct-gaaaaCCAAAGTGACAGTCTGCTTGAGCTTGG-TCCCTGAGGGGCCCGTCTGCCAGTTTGGGTCCC---ACATGCTCTGAGTTGTGACAGGA----CTCTGAACAAAGCAGCTGTCATCGAGAAGGATGCCACAAGGCAGGTCTCATATGGTTCGCATCGCTTTGTTGA-------CCACACTTGATCGACCTTGACCTCCTATTATTTCCCATAATTTTATATGACTGTCTTGAGTTTCTGCCTCCTGAGCCACTCCTTGCTGCTGCTGCTGTGTAAAGAGACCTCTTGATTAATTAATCAATTAATCAGTGCATGCTGAGGAGCTATTCAGGGTAGTTAAACACGGAAAACAAAATGCTACAGCCGGTAGTCAAGATGGATCATAATTAAGAACAGCCCTCCCACCG-CTGATCTTCCTG-CCCACCCTGGCTGCCCCATGCTGCCTCTTTC---ACCCACAGTTCAT-CAAACCCTCTTCAGTCCTGA-GGAGCTTCCACCCCATAAAAGGGTGAATGACTTATTCTGACAATAAGTTTCAGAAGGG-----CAGATTTTCT-TCTAATGTCCTAGAGGA-AAACAAGCCTAGAGATGAACCTCACCAATCA-TTGCAA-AAATGTTGGATCTCAGAAGTTTGATCCAGCCCCTAAG-ATGGCATA-TGGCTCTGTCCGTATATGTA-GGACC--ACTCTCTTCTCTCAATTTCTCCACAA---CCAGCgtcatggagctagaaggaccttacaataaggagcagccatggc-cttgtgtgacagatgaggggctcagtgaggctaaggagctcatccagggtcac---- i canFam3.chr7 I 356 C 0 a score=19738.000000 s hg38.chr1_KI270759v1_alt 60155 5 + 425601 agaac s panTro4.chr1 224805749 5 + 228333871 agaac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226165679 5 - 229942017 agaac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140054911 5 - 143122389 agaac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16770029 5 - 229590362 agAAC i rheMac3.chr1 C 0 I 319 s macFas5.chr1 223532775 5 - 227556264 agaaC i macFas5.chr1 I 319 C 0 s papAnu2.chr1 16582848 5 - 220367699 agaac i papAnu2.chr1 I 322 C 0 s chlSab2.chr25 82382163 5 + 85787240 agAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14059106 5 - 49578535 agaac i calJac3.chr19 C 0 C 0 s mm10.chr1 178677908 4 + 195471971 -GGAC i mm10.chr1 C 0 I 1 s canFam3.chr7 36250790 2 + 80974532 ---ac i canFam3.chr7 C 0 C 0 a score=18052.000000 s hg38.chr1_KI270759v1_alt 60160 5 + 425601 tccaa s panTro4.chr1 224805754 5 + 228333871 tccaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226165684 5 - 229942017 tccaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140054916 5 - 143122389 tccaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16770353 5 - 229590362 TCCAA i rheMac3.chr1 I 319 C 0 s macFas5.chr1 223532780 5 - 227556264 TCCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16582853 5 - 220367699 tccaA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82382168 5 + 85787240 TCCAA i chlSab2.chr25 C 0 I 310 s calJac3.chr19 14059111 5 - 49578535 tccca i calJac3.chr19 C 0 C 0 s mm10.chr1 178677913 5 + 195471971 CCCAA i mm10.chr1 I 1 C 0 s canFam3.chr7 36250792 1 + 80974532 ----a i canFam3.chr7 C 0 C 0 a score=358279.000000 s hg38.chr1_KI270759v1_alt 60165 117 + 425601 ggtcacaagtggcagaactgga-----------aACTATCTGATACTCAACGAACACTCCTGGTGCTTGTTTCTCTGTGTAATCC-----------------TAAAGCAAAGTAAATAAGAGACATTGTTCTCACTGAATCCATT s panTro4.chr1 224805759 117 + 228333871 ggtcacaagtggcagaactgga-----------aactatctgatactcaatgaacactcctggtgcttgtttctctgTGTAATCC-----------------TAAAGCTAAGTAAATAAGAGACATTGTTCTCACTGAATCCATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226165689 117 - 229942017 ggtcacaagtggcagaactgga-----------aACTATCTGATACTCAACGAACACTCCTGGTGCTTGTTTCTCTGTGTAATCC-----------------TAAAGCAAAGTAAATAAGAGACATTGTTCTCACTGAATCCATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140054921 117 - 143122389 ggtcacaagtggcagaactgga-----------aactatctgacactcagcgaacactcctggtgcttgtttctctgTGTAATCC-----------------TAAAGCAAAGTAAATAAGAGACATTGTTCTCATTAAATCCATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16770358 117 - 229590362 TGTCACAAGTGGCAGAACTGGA-----------AACCATCTGATACTCAACGAACACTCCTCGTGCTCGTTTCTCTGTGTAATCC-----------------TTAAGCCAAGTAAATAAGCGACATTGTTCTCATTAAATCCATT i rheMac3.chr1 C 0 I 712 s macFas5.chr1 223532785 117 - 227556264 TGTCACAAGTGGCAGAACTGGA-----------AACCATCTGATACTCAACGAACACTCCTCGTGCTCGTTTCTCTGTGTAATCC-----------------TTAAGCCAAGTAAATAAGCGACATTGTTCTCATTAAATCCATT i macFas5.chr1 C 0 I 708 s papAnu2.chr1 16582858 117 - 220367699 TGTCAcaagtggcagaactgga-----------aaCCATCTGATACTCAACGAACACTCCTCGTGCTCGTTTCTCTGTGTAATCC-----------------TTAAGCCAAGTAAATAAGCGACATTGTTCTCATTAAAtccatt i papAnu2.chr1 C 0 I 718 s chlSab2.chr25 82382483 117 + 85787240 TGTCACAAGTGGCAGAACTGGT-----------AACCATCTGATACTCAACGAACACTCCTAGTGCTCATTTCTCTGTGTAATCC-----------------TCAAGCCAAGTAAATAAGCGACATTGTTATCATTAAATCCATT i chlSab2.chr25 I 310 I 762 s calJac3.chr19 14059116 131 - 49578535 ggtcacaggtggcaggactgga-----------aac--tctgatcctcagcgaacactcctggtgcttgttcctctgtgtgatcctgcttTCCTGTAACAATTAAAGCCAAGTAAAGCAGAGACATTGCTC-CATTTAGTCCGTT i calJac3.chr19 C 0 I 1659 s mm10.chr1 178677918 112 + 195471971 GGTCATAA-----------GGA-----------AATACTTTCACACCCATTT-GCATCACCAGGGCT-GTTTCTTCATGTAATCTAGTTTTTGTG-------GAAGTTAAAGCAAATGAGAGTCAGAGTGCTCACTACCCCCA-- i mm10.chr1 C 0 C 0 s canFam3.chr7 36250793 134 + 80974532 gctaattagtagcagaactggaactagaacctgaatgatctgataactggttaacactcgtggtgcttagttctctgTGAAGTCCTATTTTCCTAT------AAAAATCACATAAATGAAAGAAATCATCCTCATTAAAT----- i canFam3.chr7 C 0 C 0 a score=1762.000000 s hg38.chr1_KI270759v1_alt 60282 3 + 425601 AAA s panTro4.chr1 224805876 3 + 228333871 AAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226165806 3 - 229942017 AAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140055038 3 - 143122389 AAA i nomLeu3.chr5 C 0 C 0 s canFam3.chr7 36250927 1 + 80974532 --A i canFam3.chr7 C 0 C 0 e mm10.chr1 178678030 0 + 195471971 C e calJac3.chr19 14059247 1659 - 49578535 I e rheMac3.chr1 16770475 712 - 229590362 I e chlSab2.chr25 82382600 762 + 85787240 I e papAnu2.chr1 16582975 718 - 220367699 I e macFas5.chr1 223532902 708 - 227556264 I a score=27205.000000 s hg38.chr1_KI270759v1_alt 60285 8 + 425601 TGCTTCTG s panTro4.chr1 224805879 8 + 228333871 TGCTTCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226165809 8 - 229942017 TGCTTCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140055041 8 - 143122389 TGCTTCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16771187 8 - 229590362 TGCTTCTG i rheMac3.chr1 I 712 C 0 s macFas5.chr1 223533610 8 - 227556264 TGCTTCTG i macFas5.chr1 I 708 C 0 s papAnu2.chr1 16583693 8 - 220367699 TGCTTCTG i papAnu2.chr1 I 718 C 0 s chlSab2.chr25 82383362 8 + 85787240 TGCTTCTG i chlSab2.chr25 I 762 C 0 s mm10.chr1 178678030 6 + 195471971 --CTTCTC i mm10.chr1 C 0 C 0 s canFam3.chr7 36250928 8 + 80974532 AGTTTCTG i canFam3.chr7 C 0 I 226 e calJac3.chr19 14059247 1659 - 49578535 I a score=29391.000000 s hg38.chr1_KI270759v1_alt 60293 11 + 425601 TTCCAGTGGTA s panTro4.chr1 224805887 11 + 228333871 TTCCAGTGGTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226165817 11 - 229942017 TTCCAGTGGTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140055049 11 - 143122389 TTCCAGTGGTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16771195 11 - 229590362 TTCCAGTGGTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223533618 11 - 227556264 TTCCAGGGGTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16583701 11 - 220367699 TTCCAGTGGTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82383370 11 + 85787240 TTCCAGTGGTA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178678036 11 + 195471971 TCTCAGCTATG i mm10.chr1 C 0 I 585 e canFam3.chr7 36250936 226 + 80974532 I e calJac3.chr19 14059247 1659 - 49578535 I a score=227134.000000 s hg38.chr1_KI270759v1_alt 60304 95 + 425601 CTTAGCACACAATGCTGAGAAGGCCAAGATTTTCTTAGAACAGAACCTCTGTTCGA-GGTTGCAAGTTGCACCTCCATCTGCAACTAACTTTCTGT s panTro4.chr1 224805898 95 + 228333871 CTTAGCACACAATGCTGAGAAGGCCAAGATTTTCTTAGAACAGAACCTCTGTTTGA-GGTTGCAAGTTGCACCTCCATCTGCAACTAACTTTCTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226165828 96 - 229942017 CTTAGCACACAATGCTGAGAAGGCCAAGATTTTCTTAGAACAGAATCTCTGTTCGAGGGTTGCAAGTTGCACCTCCATCTGCAGCTAACTTTCTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140055060 91 - 143122389 CTTAGCACACAATGCTGAGAAGGCCAAGATTTTCTTGGAACAGAATCTCT----GA-GGTTGCAGGTTGCACCTCCATCTGCAACTAACTTTCTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16771206 95 - 229590362 CTTAGCACACAATGCTGATAAGGCCAAGATTTTCTTAGAACACAATCTCTGTTCGA-GGTTGCAAGTTGCACCTCCATCTGCTACTAACTTTCTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223533629 95 - 227556264 CTTAGCACACAATGCTGATAAGGCCAAGATTTTCTTAGAACACAATCTCTGTTCGA-GGTTGCAAGTTGCACCTCCATCTGCTACTAACTTTCTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16583712 95 - 220367699 CTTAGCACACAATGCTGATAAGGCCAAGATTTTCTTAGAACACAATCTCTGTTCGA-GGTTGCAAGTTGCACCTCCATCTGCTACTAACTTTCTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82383381 95 + 85787240 CTTAGCACACAATGCTGATAAGGCCAAGATTTTCTTAGAACAGAATCTCTGTTCGA-GGTTGCAAGTTGCACCTCCGTCTGCTACTAACTTTCTGT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178678047 585 + 195471971 I e canFam3.chr7 36250936 226 + 80974532 I e calJac3.chr19 14059247 1659 - 49578535 I a score=116773.000000 s hg38.chr1_KI270759v1_alt 60399 46 + 425601 GGTAACAGGGGGCCAAGGGACCTCAGTGCAGTGGTCCAGA--ATTGCA s panTro4.chr1 224805993 46 + 228333871 GGTAACAGGGGGCCAGGGGGCCTCAGTGCAGTGGTCCAGA--ATTGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226165924 46 - 229942017 GGTAACAGGGGGCCAAGGGGCCTCAGTGCAGCGGTCCAGA--ATTGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140055151 46 - 143122389 GGTAACAGGGGGCCAAGGGGCCTCAGTGTAGTGGTCCAGA--ATTGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16771301 45 - 229590362 GGTAACAGGAGGCCAAGGGGCCTCAGTGCAGCGGTCCAGA---TTGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223533724 45 - 227556264 GGTAACAGGAGGCCAAGGGGCCTCAGTGCAGCGGTCCAGA---TTGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16583807 45 - 220367699 GGTAACAGGAGGCCAAGGGGCCTCAGTGCATCGGTCCAGA---TTGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82383476 46 + 85787240 GGTAACAGGAGGCCGAGGGGCCTCAGTGCAGTGGTCCAGA--GTTGCA i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36251162 47 + 80974532 GGTCACAGGGAACCAGAGGACCACA-TGCACTGGTCAGAATGACCGCA i canFam3.chr7 I 226 C 0 e mm10.chr1 178678047 585 + 195471971 I e calJac3.chr19 14059247 1659 - 49578535 I a score=342882.000000 s hg38.chr1_KI270759v1_alt 60445 108 + 425601 CTCACCCCATATCATGCCTGGACAAATGTTTGTTCCTTCTGATTGAACACCTTGGGAGAGCCCAGGGATGGCTATAATTCTTCAGTGGATGTAAGAATA----AGAATGTTC s panTro4.chr1 224806039 108 + 228333871 CTCACCCCCCATCATGCCTGGACAAATGTTTGTTCCTTCTGATTGAACACCTTGGGAGAGCCCAGGCATGGCTATAATTCTTCAGTGGATGTAAGAATA----AGAATGTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226165970 108 - 229942017 CTCACCCCCCATCATGCCTGGACAAATGTTTGTTCCTTCTGATTGAACACCTTGGGAGAGCCCAGGGATGGCTATAATTCTTCAGTGGATGTAAGAATA----AGAATGTTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140055197 108 - 143122389 CTCATCCCCCATGATGCCTGGACAAATGTTTGTTCCTTCTGATTGAACACCTTGGGAGAGCCCAGGGATGGCTATAATTCTTCAGTGGATGTAAGAATA----AGAATGTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16771346 108 - 229590362 TTCACCCCGCTTCATGCCTGGACAAACGTTTGTTCCTTCTAATTGAACACCTTGGGAGAGCCCAGGGATGGCTATCATTCTTTAGTGGACATAAGAATA----AGAATGTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223533769 108 - 227556264 CTCACCCCGCGTCATGCCTGGACAAACGTTTGTTCCTTCTAATTGAACACCTTGGGAGAGCCCAGGGATGGCTATCATTCTTTAGTGGACATAAGAATA----AGAATGTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16583852 108 - 220367699 CTCACCCCGCGTCATGCCTGGACAAACGTTTGTTCCTTCTAATTGAACACCTTGGGAGAGCCCGGGGATGGCTATCATTCTTTAGTGGACATAAGAATA----AGAATGTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82383522 108 + 85787240 CTCACCCCGCGTCATGCCTGGACAAACGTTTGTTCCTTTTAATTGAACACCTTGGGAGAGCCCAGGGATGGCTATCATTCTTTAGTGGACATAAGAATA----AGAATGTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14060906 101 - 49578535 CTCACCCC-CATCATGCCT-GACAAACGTTTGTTCCTTCTGATTGAACACCCTGCAAGAGCCCAGGGAAGGCTGTAATTTTTTAGTGGATGTAAGAATA----AGAg----- i calJac3.chr19 I 1659 C 0 s canFam3.chr7 36251209 109 + 80974532 TTTGCCCC---TTCTGCCTGCACAGACATTTGTGTCTCCTTTGCGAATACCTTGGGGAGATACAGCCATGGTGGTAGTTCTTTAGTGGATACAAGAAGACTCTGGAATGTTC i canFam3.chr7 C 0 I 6 e mm10.chr1 178678047 585 + 195471971 I a score=559612.000000 s hg38.chr1_KI270759v1_alt 60553 210 + 425601 TTgccaggcatggtggctcacgcctgtaatcccagcactttgggaggccga-ggcgggtggatcacgaggtcaggagattgagaccatcctgtctaacacagtgaaaccccatctctactaaaagtacaaaaaattagctgggcgtggtggtgggcgcctgtagtcccagctatttgggaggctgaggcaggagaatcacttgaatccaga- s panTro4.chr1 224806147 210 + 228333871 TTgccaggcatggtggttcacgcctgtaatcccagcactttgagaggccga-ggtgggcggatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccatctctactaaaagtacaaaaaattagctgggcatggtggtgggcacctgtagtcccagctatttgggaggctgaggcaggagaatcacttgaatccaga- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226166078 211 - 229942017 TTgccaggcatggtggttcacgcctgtgataccagcactttgagaggccaagggggggtggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccatctctactaaaagtacaaaaaattaggtgggcgtggtggtgcgcacctgtagtcccagctatttgggaggctgaggcaggagaatcgcttgaattcaga- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140055305 210 - 143122389 TTgcccggcatggttgttcacgcctgtaatcccagcactttgagaggctga-ggtgggtggatcacgaggttaggcgatcaagaccatcctggctaacacagtgaaaccccgtctctactaaaagtacaaaaaattagctgggcgtgatggtgggtgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaatccaga- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16771454 196 - 229590362 TTgccaagcgtcgtggctcacgcctgtaatcccagcactttgggaggctga-ggtgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctactaaaagtacaaaaaattagctgggcgtggtggtgggtgcctgtagtcccagctactcgggaggctga--------------tcgaacccaga- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223533877 196 - 227556264 TTgccaagcgtcgtggctcacgcctgtaatcccagcactttgggaggctga-ggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctactaaaagtacaaaaaattagctgggcgtggtggtgggtgcctgtagtcccagctactcgggaggctga--------------ttgaacccaga- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16583960 196 - 220367699 TTGCCAagcgtcgtggctcacgcctgtaatcccagcactttgggaggctga-ggcgggcggatcacgaggtcaggagatcgagaccattctggctaacacggtgaaaccctgtctctactaaaagtacaaaaaattagctgggcgtggtggtgggtgcctgtagtcccagctactcgggaggctga--------------ttgAACCccga- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82383630 196 + 85787240 TTgccaggtgccgtggctcatgcctgtaatctcagcactttgggaggctga-ggagggcagatcacgaggtcaggaggtcaagaccatcctggctaacacagtgaaaccccgtctctactaaaagtacaaaaaattagctgggcgtggtggtgggcgcctgtggtcccagctacttggaaggctga--------------ttgaacccaga- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14061007 208 - 49578535 --gccgggtgcagtggctcacgcctgtaatcccagcactttaggaggctga-ggcaggcggatcataaggtctggagatcaagaccatcctggccaacatgctgaaactccatctctactaaaa-tacaaaaaattagccaaatgtggttgcgggcgcctgtagtcccagttacttgggaggctgaggcaggagaatcgcttgaacccagga i calJac3.chr19 C 0 I 486 e mm10.chr1 178678047 585 + 195471971 I e canFam3.chr7 36251318 6 + 80974532 I a score=231303.000000 s hg38.chr1_KI270759v1_alt 60763 101 + 425601 ggtggaggttgcagtgagccgagatcgtgccattgcgctccagcctgggtgacaaggcgagactccatctca----------------aaa-------aaaaaaagaaaaaaaaaaa-----TATTCTT s panTro4.chr1 224806357 105 + 228333871 ggtggaggttgcagtgagccgagatcgtgccattgcactccagcctgggtgacaaggcgagactccgtctca----------------aaa-------aaaaaaaaaaaaaaaaaaaa-gaaTATTCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226166289 92 - 229942017 ggtggaggttgcagtgagccgagatcgtgccattgcactccagcctgggtgacagggcgagactccgtctca----------------aaa-------aaaaaaagaa--------------TGTTCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140055515 94 - 143122389 ggtggagattgcagtgagctgagatcgtgccattgcactccagcctgggcgacagggtgagactccgtctca----------------aaa-------aaaaaaaaagaa------------TGTTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16771650 106 - 229590362 ggcaaaggttgcagtgagtcgagatcgtgccattgcactccagcctgggagacagggcgagactctgtctca----------------aaa-------caaacaaacaaacaaacaaacaaaTGTACTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223534073 106 - 227556264 ggcaaaggttgcagtgagtcgagatcgtgccattgcactccagcctgggagacagggcgagactctgtctca----------------aaa-------caaacaaacaaacaaacaaacaaaTGTACTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16584156 122 - 220367699 ggcaaaggttgcagtgagtcgagatcgtgccattgcactccagcctgggagacagggcgagactctatctcaaaacaaacaaacaaacaaa-------caaacaaacaaacaaacaaacaaatgtactT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82383826 98 + 85787240 ggcaaaggttgcagtgagtcgagatcgtgccattgcactccagcctgggagacagggcgagactccgtctca-------------------------------aaacaaacaaacaaacaaaTGTACTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14061701 112 - 49578535 ggcggaggttgcagtgagccgagatcacaccattgcactccagcct-ggtgacacagcaagactccgtctca----------------aaatcaaaacaaaacaaTGAGGCCAGAATACGAATGTTCTT i calJac3.chr19 I 486 C 0 e mm10.chr1 178678047 585 + 195471971 I e canFam3.chr7 36251318 6 + 80974532 I a score=88741.000000 s hg38.chr1_KI270759v1_alt 60864 41 + 425601 G----ACCAGCCTGGCGAAGAAGATACTTAGAAGTC------TTATTTA-TT s panTro4.chr1 224806462 41 + 228333871 G----ACCAGCCTGGCGAAGAAGGTACTTAGAAGTC------TTATTTA-TT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226166381 42 - 229942017 G----ACCAGCCAGGCGAAGAAGATACTTAGAAGTC------TTATTTATTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140055609 40 - 143122389 G----ACCAGCCTGGCGAAG-AGATACTTAGAAGTT------TTATTTA-TT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16771756 45 - 229590362 GTTTGACCGGCCTGGCGAAGAAGATACTTAGAAGTC------TTTTTTT-TT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223534179 44 - 227556264 GTTTGACCGGCCTGGCGAAGAAGATACTTAGAAGTC-------TTTTTT-TT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16584278 45 - 220367699 GTTTGATTGGCCTGGCGAAGAAGATActtagaagtc------ttttttt-tt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82383924 47 + 85787240 GTTT----GGCCTGGCGAAGAAGATACTTAGAAGTCttttttttttttt-tt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14061813 38 - 49578535 GTTTGACCCGCCTGGCGAAGAGGATACTTAAAAGTC--------------TT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36251324 40 + 80974532 ----GATGATCCTGGTGCGGGGGATGCTTAGAAATC------TTTTTTA-A- i canFam3.chr7 I 6 C 0 e mm10.chr1 178678047 585 + 195471971 I a score=3521769.000000 s hg38.chr1_KI270759v1_alt 60905 896 + 425601 TTTTTAA--CTTCTTTTTGAAAGTTTTCACTATAAAATTCTTACATTTGTCTAATGTGT-TTATCAAAAAT-AGAGGCTTTTCTGCCAGTGTG--TCTTCTCATTTCTGTGGAATGCCAATCAAACTATCCAACTCTTTGAGTACGTCTCGGGTTTGACTGGTAAGCCAGGTATCTGACTTGCAC-TAGCAGCCTTGGAGTTATAGAATCTCC--------TCTCCCT-------CTGCTTCTGTGTTCTGTAGGACCCTGCTTTCTCGGCTGTGATTCACGACAAACTCCAGGTCCCCAACACCATCCGGAAGGCATGGAACGACCGGGACAACCGCTGTGACATTTGCGCCACTCACCTGAACCAGTTGAAGCAGGAGGCCATCCAGATGGTGCTGACGTTGGAGCAGGCAGCCGGCAGTGAGCACTACGACGCCTCGCCCTGCTCCCCGCCACCGCTCTCCAACATCCCCACCCTGGTGGGGTCCCGGCACGTGGGTGGGCTCCAGCAGCCCAGAGACTGGGCCTTTGTGCCCGCCCCCTGTGCCACCTCCAACTACACAGGCTTCGC---CAACAAGCACGGCAGCAAACCCAGCAGCCTTGGGGTCAGCAATGGGGCGGAAAAGAAGAGCGGGTCCCCAACCCACCAGGCCAAGGTCAGCCTCCAGATGGCCACCAGTCCAAGCAATGGGAACATCCTCAATTCGGTGGCCATCCAGGCTCACCAGTACCTGGATGGCACCTGGTCCCTGTCGAGAACCAACGGGGTCACCCTGTACCCATACCAGGTAAGTAGCCTGTGTGAGCCAGGAAGAGCAGGGCT-------------------------------------------------GGCTGGAGTCAAAGCGGAGAAGTAGGCAGCA---CTTCCTTCCGCTGCCTCCTCCC----GGGAACCCTGTAACTCAGAGCCCAGTGTTTCCATGTGGCCCC s panTro4.chr1 224806503 896 + 228333871 TTTTTAA--CTTCTTTTTAAAAGTTTTCACTATAAAATTCTTACATTTGTCTAATGTGT-TTATCAAAAAT-AGAGGCTTTTCTGCCAGTGTG--TCTTCTCATTTCTCTTGAATGCCAATCAAACTATCAAACTCTTTGAGTACATCTAGGGCTTGACTCGTAAGCCAGGTATCTGACTTGCAC-TAGCAGCCTTGGAGTTATAGAATCTCC--------TTTCCCT-------CTGCTTCTGTGTTCTGTAGGACCCTGCTTTCTCGGCTGTGATTCACGACAAACTCCAGGTCCCCAACACCATCCGGAAGGCATGGAATGACCGGGACAACCGCTGTGACATTTGCGCCACTCACCTGAACCAGCTGAAGCAGGAGGCCATCCAGATGGTGCTGACGTTGGAGCAGGCAGCCGGCAGTGAGCACTACGACGCCTCGCCCTGCTCCCCGCCACCGCTCTCCAACATCCCCACCCTGGTGGGGTCCCGGCATGTGGGTGGGCTCCAGCAGCCCAGAGACTGGGCCTTTGTGCCCGCCCCGTGTGCCACCTCCAACTACACAGGCTTCGC---CAACAAGCACGGCAGCAAACCCAGCAGCCTTGGGGTCAGCAATGGGGCGGAAAAGAAGAGCGGGTCCCCAACCCACCAGGCCAAGGTCAGCCTCCAGATGGCCACCAGTCCAAGCAATGGGAACATCCTCAATTCGGTGGCCATCCAGGCTCACCAGTACCTGGATGGCACCTGGTCCCTGTCGAGAACCAACGGGGTCACCCTGTACCCATACCAGGTAAGTAGCCTGTGTGAGCCAGGAAGAGCAGGGCT-------------------------------------------------GGCTGGAGTCAAAGCGGAAAAGTAGGCAGCA---CTTCCTTCCGCTGCCTCCTCCC----GGGAACCCTGTAACTCAGAGCCCAGTGTTTCCATGTGGCCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226166423 895 - 229942017 TTTTTAA--CTTCTTTTTAAAAGTTTTCACTATAAAATTCTTACATTTGTCTAATGTGT-TTATCAAAAAT-AGAGGCTTTTCTGCCAATGTG--GCTTCTCATTTCTGTGGAATGCCAATCAAACTATCAAACTCTTTGAGCACATCTAGGGCTTAACTCGTAAGCCAGGTATCTCACTTGCAC-TAGCAGCCTTGGAGTTATAGAATCTCC--------TTTCCCT-------CTGCTTCTGTGTTCTCTAGGACCCTGCTTTCTCAGCTGTGATTCACGACAAACTCCAGGTCCCCAACACCATCCGGAAGGCATGGAACGACCGGGACAACCGCTGTGACATTTGCGCCACTCACCTGAACCAGTTGAAGCAGGAGGCCATCCAGATGGTGCTGACATTGGAGCAGGCAGCTGGTAGTGAGCACTACGACGCCTCGCCCGGCTCCCCACCGCCGCTCTCCAACATCCCCACCCTGGTGGGGTCCCGGCACGTGGGTGGGCTCCAGCAGCCAAGGGACTGGGCCTTTGTGCCCGCCCCCTATGCCACCTCCAACTACACAGGCTTCGC---CAACAAGCACGGCAGCAAACCCAGCAGCCTTGGGGTCAGCAATGGGGCAGAAAAGAAGAGCGGGTCCCCAACCCACCAGGCCAAGGTCAGCCTCCAGATGGCCACCAGTCCAAGCAATGGGAACATCCTCAATTCCGTGGCCATCCAGGCTCACCAGTACCTGGATGGCACCTGGTCCCTGTCGAGAACCAACGGGGTCACCCTGTACCCATACCAGGTAAGTAGCTTGTATGAGCCAGGAAGAGCGGGGCT-------------------------------------------------GGCTAGAGTGAAAGCACAGAAGTAGGCAGCA---CTCCGTTCCTCCGCCTCCACCT----GGAAACCCTGTAACTCAGAGCCCAGTGTTCCCATGTGG-CCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140055649 887 - 143122389 TTTTTAA--CTTCTTTTT-AAAGTTTTCACTAT-AAATTCTTACACTTGTCGAATGTG--TTATC-AAAAT-AGAGG--TTTCTG-CAGTGTGCTTCTTCTCATTTCTGTTGAATGCCAATCAAACTAGCAAAC----TGAGTACATCTGGGGCTTAACTCGTAAGCCAGGTATCTGACTTGCAC-TAGCAGCCTTGGAGTTACAGAATCTCC--------TTTCCCT-------CTGCTTCTGTGTTCTCTAGGACCCTGCTTTCTCGGCTGTGATTCACGACAAACTCCAGGTCCCCAACACAATCCGGAAGGCATGGAACGACCGGGACAGCCGCTGTGACATTTGCGCCACTCACCTGAACCAGTTGAAGCAGGAGGCCATCCAGATGGTGCTGACCTTGGAGCAGGCAGCTGGCAGTGAGCGCTACGACGCCTCGCCCGGCTCCCCACCGCCGCTCTCCAACATCCCCACGCTGGTGGGGTCCCGGCACGTGGGTGGGCTCCAGCAGCCCAGGGACTGGGCCTTTGTGCCCGCCCCCTATGCCACCTCCAACTACACAGGCTTCGC---CAACAAGCACGGCAGCAAACCCAGCAGCCTTGGGGTCAGCAATGGGGCAGAGAAGAAGAGCGGGTCCCCCACCCACCAGGCCAAGGTCAGCCTCCAGATGGCCACCAGTCCAAGCAATGGGAACATCCTCAATTCGGTGGCCATCCAGGCTCACCAGTACCTGGATGGCACCTGGTCCCTGTCGAGAACCAACGGGGTCACCCTGTACCCATACCAGGTAAGTAGCTTGTATGAGCCAGGAAGAGCAGGGCT-------------------------------------------------GGCTAGAGTGAAAGCAGAGAAGGAGGCAGCA---CGTCCTTCCTCCGCCTCCTCCC----GGGAGCCCTGTAACTCAGAGCCTAGTGTTTCCATGTGGCCCG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16771801 841 - 229590362 TTTTTAA--CTTCTTTTTAAAAGTTTTCACTATAAAATTCTTACATTTGTCAAATGTGT-TTATCAAAAAT-GGAGGCTTTTCTGCCAATGTA--GCTTCTCATTTCTGTTGAATGCCAATCAAACTATCAAACTCTT------------------------------------------------GAGCAGCCTTGGAGTTATAGAATCTCC--------CTTTCCT-------CTGCTTCTGTGTTCTCTAGGACCCTGCTTTCTCGGCTGTGATTCACGACAAACTCCAGGTCCCCAACACCATCCGGAAGGCATGGAATGACCGGGACAACCGCTGTGACATTTGCGCCACTCACCTGAACCAGCTGAAGCAGGAGGCCATCCAGATGGTGCTGGCCTTGGAGCAGGCAGCTGGCAGTGAGCACTACGACGCCTCGCCCGGCTCCCCGCCACCGCTCTCCAACATCCCCACCCTGGTGGGGTCCCGGCACGTGGGTGGGCTCCAGCAGCCCAGGGACTGGGCCTTTGTGCCTGCCCCCTATGCCACCTCCAACTACACAGGCTTCGT---CAACAAGCACAGCAGCAAACCCAGCAGCCTTGGGGTCAGCAATGGGGCAGAAAAGAAGAGTGGATCCCCCACCCACCAGGCCAAGGTCAGCCTCCAGATGGCCACCAGTCCAAGCAATGGGAACATCCTCAATTCAGTGGCCATCCAGGCTCACCAGTACCTGGATGGCACCTGGTCCCTGTCGAGAACCAACGGGGTCACCCTGTACCCATACCAGGTAAGTAGCCTGGGTGAGCCAGGAAGAGCAGGGCT-------------------------------------------------GGCTCGAGTCAAAGCAGAGAAGTGGGCAGCA---CTTCCTTCCTCTGCCTCCTCCT----GGG--------AACTCAAAGCCTAGTGTTTCCATGTGGCCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223534223 841 - 227556264 TTTTTAA--CTTCTTTTTAAAAGTTTTCACTATAAAATTCTTACATTTGTCAAATGTGT-TTATCAAAAAT-GGAGGCTTTTCTGCCAATGTA--GCTTCTCATTTCTGTTGAATGCCAATCAAACTATCAAACTCTT------------------------------------------------GAGCAGCCTTGGAGTTATAGAATCTCC--------CTTTCCT-------CTGCTTCTGTGTTCTCTAGGACCCTGCTTTCTCGGCTGTGATTCACGACAAACTCCAGGTCCCCAACACCATCCGGAAGGCATGGAATGACCGGGACAACCGCTGTGACATTTGCGCCACTCACCTGAACCAGCTGAAGCAGGAGGCCATCCAGATGGTGCTGGCCTTGGAGCAGGCAGCTGGCAGTGAGCACTACGACGCCTCGCCCGGCTCCCCGCCACCGCTCTCCAACATCCCCACCCTGGTGGGGTCCCGGCACGTGGGTGGGCTCCAGCAGCCCAGGGACTGGGCCTTTGTGCCTGCCCCCTATGCCACCTCCAACTACACAGGCTTCGT---CAACAAGCACAGCAGCAAACCCAGCAGCCTTGGGGTCAGCAATGGGGCGGAAAAGAAGAGTGGATCCCCCACCCACCAGGCCAAGGTCAGCCTCCAGATGGCCACCAGTCCAAGCAATGGGAACATCCTCAATTCAGTGGCCATCCAGGCTCACCAGTACCTGGATGGCACCTGGTCCCTGTCGAGAACCAACGGGGTCACCCTGTACCCATACCAGGTAAGTAGCCTGGGTGAGCCAGGAAGAGCAGGGCT-------------------------------------------------GGCTCGAGTCAAAGCAGAGAAGTGGGCAGCA---CTTCCTTCCTCTGCCTCCTCCT----GGG--------AACTCAAAGCCTAGTGTTTCCATGTGGCCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16584323 841 - 220367699 tttttaa--cttctttttaaaagttttcactATAAAATTCTTACATTTGTCAAATGTGT-TTATCAAAAAT-GGAGGCTTTTCTGCCAATGTA--GCTTCTCATTTCTGTTGAATGCCAACCAAACTATCAAACTCTT------------------------------------------------GAGCAGCCTTGGAGTTATAGAACCTCC--------CTTTCCT-------CTGCTTCTGTGTTCTCCAGGACCCTACTTTCTCAGCTGTGATTCACGACAAACTCCAGGTCCCCAACACCATCCGGAAGGCATGGAATGACCGGGACAACCGCTGTGACATTTGCGCCACTCACCTGAACCAGCTGAAGCAGGAGGCCATCCAGATGGTGCTGGCCTTGGAGCAGGCAGCTAGCAGTGAGCACTATGACGCCTCGCCCGGCTCCCCGCCACCGCTCTCCAACATCCCCACCCTGGTGGGGTCCCGGCACGTGGGTGGGCTCCAGCAGCCCAGGGACTGGGCCTTTGTGCCTGCCCCCTATGCCACCTCCAACTACACAGGCTTCGT---CAACAAGCACAGCAGCAAACCCAGCAGCCTTGGGGTCAGCAATGGGGCGGAAAAGAAGAGTGGATCCCCAACCCACCAGGCCAAGGTCAGCCTCCAGATGGCCACCAGTCCAAGCAATGGGAACATCCTCAATTCGGTGGCCATCCAGGCTCACCAGTACCTGGACGGCACCTGGTCCCTGTCGAGAACCAACGGGGTCACCCTGTACCCATACCAGGTAAGTAGCCTGGGTGAGCCAGGAAGAGCAGGGCT-------------------------------------------------GGCTCGAGTCAAAGCAGAGAAGTGGGCAGCA---cttctttcctctgcctcctcct----ggg--------aACTCAAAGCCTAGTGTTTCCATGTGGCCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82383971 840 + 85787240 tttttaa--cttctttttAAAAGTTTTCACTATAAAATTCTTACATTTGTCAAATGTGT-TTATCAAAAAT-GGAGGCTTTTCTGCCATTGTA--GCTTCTCATTTCTGTTGAATGCCAATCAAACTATCAAACGCTT------------------------------------------------GAGCAGCCTTGGAGTTATAGAGTCTCC--------CTTTCCT-------CTGCTTCTGTGTTCTCTAGGACCCTGCTTTCTCAGCTGTGATTCACGACAAACTCCAGGTCCCCAACACCATCCGGAAGGCATGGAATGACCGGGACAACCGCTGTGACATTTGCGCCACTCACCTGAACCAGTTGAAGCAGGAGGCCATCCAGATGGTGCTGGCCTTGGAGCAGGCAGCTGGCAGTGAGCACTATGACGCCTCGCCCGGCTCCCCGCCACCGCTCTCCAACATCCCCACCCTGGTGGGGTCCCGGCACGTGGGTGGGCTCCAGCAGCCCAGAGACTGGGCCTTTGTGCCTGCTCCCTATGCCACCTCCAACTACACAGGCTTCGT---CAACAAGCACAGCAGCAAACCCAGCAGCCTTGGGGTCAGCAATGGGGCGGAAAAGAAGAGTGGATCCCCAACCCACCAGGCCAAGGTCAGCCTCCAGATGGCCACCAGTCCAAGCAATGGGAACATCCTCAATTCGGTGGCCATCCAGGCTCACCAGTACCTGGACGGCACCTGGTCCCTGTCGAGAACCAACGGGGTCACCCTGTACCCATACCAGGTAAGTAGCCTGGGTGAGCCAGGAAGAGCAGGGCT-------------------------------------------------GGCTCGAGTCAAAGCAGAGAAGTGGGCAGCA---CTTCCTTCCTCTGCCTCCTCCT----GGG--------AACTCAAAGCCTAGTGTTTCCA-GTGGCCCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14061851 900 - 49578535 TTTTTAAATCTTCTTTTTAAAAGTTTTCACTATAAAATTCTTACATTTGTCAAAGGTGT-TTATCAGAAGTAAGAGGCTTTTCTGCCAGTATG--GCTTGTCATTTCTGCTG-ATGCCAATCAAACCATCAAACTCCTTGGGCACAGCCAGGGCTTAGCTCGTGAGCCAGGTATCTGACTTGCACTGAGCAATCTT-GAGTGATAGAATCTCC--------TTTTCCT-------CTGTTTCCATGTTCTCTAGGACCCTGCTTTCTCAGCTGTGATTCACGACAAACTCCAGGTCCCCAACACCATCCGGAAGGCGTGGAATGACCGGGACAACCGCTGTGACATTTGTGCCACTCACCTGAACCAGCTGAAGCAGGAGGCCATCCAGATGGTGCTGGCCTTGGAGCAGGCCGCTGGCAGTGAGCACTACGACACCTCACCCAGCTCGCCCCCACCGCTCTTCAACATCCCCACCCTGGTGGGGTCCCGGCATGTGGGTGGGCTCCAGCAGCCCAGGGAGTGGGCCTTTGTGCCCGCTCCCTATGCCACCTCCAACTACACAGGCCTTGT---CAACAAGCACAGCAGCAAACCCAGCAGCCTTGGGGTCAGCAATGGGGCGGAAAAGAAGAGTGGGTCCCCAAGTCACCAGGCCAAGGCCAGCCTCCAGATGGACACCAGTCCAAGCAATGGGAACATCCTCAATTCAGTGGCCATCCAGGCTCACCAGTACCTGGAAGGCACCTGGTCCCTGTCGAGGACCAACGGGGTCACCCTGTACCCGTACCAGGTAAGTCACCCGTGTGAGCCAGGAAGAACAGGGCT-------------------------------------------------GGCTGGAGTGAGAGCAGAGAAGTGGGTAGCACTTCTTCCTTCCTCTGCTTCCTCCT----GGGAAGCCCGTAATTCAGAGCCTAACGTTTCCATGTGA-CCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178678632 895 + 195471971 TGTTTAG--TATCTTT---AAGGTTTTCAGCTTCTAACTCTTGCAT------AATGTCTGCCATC-------TAATGCTTTTCCTCTGGCATC----------TTCCTGGTG-ATGTCAATCAAATAGTCAAATCCTT-----------------------GGGTGGCAGACGTCTGAACTGGAT-TTACCACCATCCAGTTACAAATTGCTC--------TTTTTTTTTTCTTCCTGTTTGTGTGTTCTGTAGGACCCTGCTTTCTCTGCTGTGATTCACGACAAACTCCAGGTTCCCAATACTATCAGGAAGTCGTGGAATGACCGAGACAACCGCTGTGACATTTGTGCCACACACCTGAACCAGCTAAAGCAGGAAGCCATCCAAATGGTGCTGACCTTGGAGCAGGCAGCTGGCAGCGAGCACTATGACACCTCTCTGGGCTCACCCCCTCCGATCTCCAGCATTCCCACACTGGTGGGGTCTCGCCACATGGGTGGGCTCCAGCAGCCCAGGGAGTGGGCCTTTGTGCCTGCCCCCTATGCCACTTCTACCTACACAGGCCTTGT---CAACAAACACAGCGGCAAACCCAACAGCCTTGGGGTCAGCAACGGAGCGGAAAAGAAGAGTGGCTCCCCAACCCACCAGGCCAAGGTCAGCCTCCAGATGGCCACCAGTCCCAGCAATGGAAACATCCTCAACTCGGTGGCCATTCAGGCTCATCAATATCTAGACGGCACCTGGTCCCTTTCAAGAACCAATGGGGTTACCCTGTACCCCTACCAGGTAAGCACCCC-TAAAATCAGGGAAGTAGAGGGTTTTCCTCCCTGGATATTGAAATGAACACATACTCCCGATCTCCCTCTACAAGTCAGAGTCGAGGCAGAG--GTAGGCTATA---------TCTTCTTTCTCCTTCT----GGAAGCTCCT-AGCTCAGTGCTTCAGGCTTCCATGTAA-CCC i mm10.chr1 I 585 C 0 s canFam3.chr7 36251364 896 + 80974532 -----AG--ATTATTCCTTCATGTCTCCCCCATAATAATCTTACGTTCATCGAATGCAC-TTGTC--TGCT-AGAGGCTGTACTGACCGCCTG--GCTGCTCATTTCTGTGGGATGTCTAGCAGA----CAAACACTC--GGTACATCCAGGGGTTAACTCATAAGCCAGACACCTGAATTGCACTTACCAGCCTT-GAGTTATAGGTTCTCCTATTTTTTTTTTCTT-------TTGCTTGTGTGTTCTCTAGGACCCTGCTGTCTCGGCTGTGATTCATGACAAGCTCCAGGTCCCCAACACCATTCGGAAAGCATGGAATGACAAGGACAACCGCTGTGATATTTGTGCCACACACCTGAACCAGCTGAAGCAGGAGGCCATCCAGATGGTGTTAACCTTGGAACAGGCAGCTGGCAGCGAGCATTACGATGGCTCCCCTGGCTCACCCCCACCACTCTCCAACATCCCCGCCTTGGTGGGGTCCCGGCATGTGGGTGGGCTCCAGCAGCCCAGGGATTGGGCCTTTGTGCCTGCCTCCTATGCCTCCTCCAACTATACAGCTTTTGTCACCAACAAGCATAGCAGCAAACCCAACAGCCTTGGGGTTAGCAGTGGGGCAGAGAAGAAGAGTGGGTCCCCAACCCACCAGGCCAAGGTCAGCCTCCAGATGGCCACCAGTCCCAGCAATGGGAACATCCTCAACTCGGTGGCCATCCAGGCTCACCAGTACTTGGACGGCACCTGGTCCCTGTCGAGAACCAACGGTGTCACCCTGTACCCGTACCAGGTAAGTAGCCT--CTGGACAAGTTAGATTAAGTTT-------------------------------------------------GGTTGGAGTCTAAACAGAGACATGGGCAGCA---CTTCCTGCCTTGGCTCTTTTCTTTTGAGGAACTCCCCAATCCAGAGCCTGATGTTTCCATGTGGCCCC i canFam3.chr7 C 0 C 0 a score=1287842.000000 s hg38.chr1_KI270759v1_alt 61801 425 + 425601 CACAGAGTTCTCATCAAGGTGCCCCACCCGGGCCTGCCTGCTTTGAGAGGGTGTTGCTACATCTTCCAAACTTTCCACACCTGCCCTTTCTCTGCTCTTCAGTGTCTCCTTCCTGAGAGACCCTCTTTGTGTAAGAGGTCCTTGCTGGTCCAGGTGATGCCAGCGACTTCCCAGCCAGCAGATTTACCACATGGCAGAGCCATGAAGAGGTAGGCCACACAGATACTTGgactggggtccaagc-cccgacttgtccacttattagcagcgtgacttggcacaaggggtttgccctgtcttaggctcaagtccctcatttataaatggatgtga-gtcacgagaattaaataaggtagtgtttgcatgacatgtaggccaacacctgccatatagtaggggatcaTTGTTGTGCCTGTTAACAGAGA s panTro4.chr1 224807399 425 + 228333871 CACAGAGTTCTCATCAAGGTGCCCCACCCAGGCCTGCCTGCTTTGAGAGGGTGTTGCTACATCTTCCAAACTTTCCACACCTGCCCTTTCTCTGCTCTTCAGTGTCTCCTTCCTGAGAGACCCTCTTTGTGTAAGAGGTCCTTGCTGGTCCAGGTGATGCCAGCGGCTTCCCAGCCAGCAGATTTACCACATGGCAGAGCCATGAAGAGGTAGGCCACACAGATACTTGgactggggtccaagc-cccgacttgtccacttattagcagtgtgacttggcacaaggggtttgccctgtcttaggctcaagtccctcatttataaatggatgtga-gtcacgagaattaaataaggtagtgtttgcatgacatgtaggccaacatctgccatatagtaggggatcaTTGTTGTGCCTGTTAACAGAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226167318 406 - 229942017 CACAGAGTTCGCATCAAGGTGCCCCACCTGGGCCTGCCCGCTTTGAGAGGGTGTTGCTGCATCTTCCAAACTTTCCACACCTGCCCTTTCTCTGCTCTTCAGTGTCTCCTTCCTGAGAGACCC-------------------TGCTGGTCCAGGTAATGCCGGTGGCTTCCCAGCCAGCAGGTTTACCACatggcataggcatgaagaggtaggctacagagatacttggactggggtccaagc-cccgacttgtccacttattagcagtgtgacttggcacaaggggtttgccctgtcttaggttcatgtccctcatttataaatggatgtga-gtcacgagaattaaataaggtagtgtttgcatgacatgtaggccaacatctgccatatagtaggggatcaTTGTTGTGCCCATTAACAGATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140056536 406 - 143122389 CACAGAGTTCTCATCAAGGTGCCCTACCCGGGCCTGCCTGCTTTGAGAGGGTGTTGCTGTATCTACCAAACTTTCCACACCTGCCCTTTCTCTGCTCTTCAGTGTCTCCTTCCTGAGAGACCC-------------------TGCTGGTCCAGGTGATGCCAGCGGCTTCCCAGTCAGCAGGTTTACCACatggcatagccatgaagaggtaggccacagagatacttggactggggtccaagc-cctcacttgtccacttattagcagtgtgacttggcacaagcggtttgacctgtcttaggctcaagtccctcatttataaatggctgtga-gtcacgagaattaaataaggtagtgtttgcatgacatgtaggccaatgtctgccatacactaggGGACCATTGTTGTGCCTGTTAACAGAGA i nomLeu3.chr5 C 0 M 100 s rheMac3.chr1 16772642 406 - 229590362 CACAGAGTTCTCATCAAGGTGCCCCACCCAGACCCGCCTGCTTTGAGAGGGTGCTGCTGTATCCTCCAAACCTTCCACACCTCCCCTTTCTCCACTCTTCAGTGTCTCCTTCCTGAGAGACCC-------------------TGCTGGTCCAGACGATGCCAGCAGCTTCCCAGCCAGCAGGTTTACCACatggcatagccatgaagaggtaggccacagagatccttggactggggtccaagc-cccgacttggccacttattagcagtgtgacttgtcacaaggggtttgccctgtcttaggctcaagtccctcatttataaatggatgtga-gtcatgaaaattaaataaggtagtgtttgcatgacatgtaggccaatatctgccatatagtaggGAATCATTGTTGTGCCTGTTAACAGAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223535064 406 - 227556264 CACAGAGTTCTCATCAAGGTGCCCCACCCAGACCCGCCTGCTTTGAGAGGGTGCTGCTGTATCCTCCAAACCTTCCCCACCTCCCCTTTCTCCACTCTTCAGTGTCTCCTTCCTGAGAGACCC-------------------TGCTGGTCCAGACGATGCCAGCAGCTTCCCAGCCAGCAGGTTTACCACatggcatagccatgaagaggtaggccacagagatccttgaactggggtccaagc-cccgacttggccacttattagcagtgtgacttgtcacaaggggtttgccctgtcttaggctcaagtccctcatttataaatggatgtga-gtcatgaaaattaaataaggtagtgtttgcatgacatgtaggccaatatctgccatatagtaggGAATCATTGTTGTGCCTGTTAACAGAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16585164 403 - 220367699 CACAGAGTTCTCATCAAGGTGCCCCACCCAGACCTGTCTGCTTTGAGAGGGTGCTGCTGTATCCTCCAAACCTTCCACACCTCCCCTTTCTCCACTCTTCAGTGTCTCCTTCCTGAGAGGCCC-------------------TGCTGGTCCAGACACTGCCAGCAGCTCCCCAGCCAGCAGGTTTACCACGTGGCATAGCCATGAAGAGGTAGGCCACAGAGATCCTTGGACTGGGGTCCAAGC-TCCGACTTGTCCACTTATTAGCAGTGTGACTTGTCACAAAGGGTTTGCCCTGTCTTAGGCTCAAGTCCCTCATTTATAAATAGATGTGa-gtcatgaaaatgaaataaggtaGTGTTTGCATGACATGTAGGCCAATATCTGCCATATAGTAGGGGATCA---TTGTGCCTGTTAACAGAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82384811 406 + 85787240 CACAGAGTTCTCATCAAGGTGCCCCACCCAGACCTGCCTGCTTCGAGAGGGTGCTGCTGTATCCTCCAAACCTTCCACACCTCCCCTTTCTCCACTCTTCAGTGTCTCCTTCCTGAGAGACCC-------------------TGCTGGTCCAGATGCTGCCAGCAGCTTCCCAGCCAGCAGGTTTGCCACatggcatagccatgaagaggtaggccacagagatccttggactggggtccaagc-tccgacttggccacttattagcagtgtgacttgtcacaaggggtttgccctgtcttaggctcaagtccctcatttataaatggatgtga-gtcatgaaaatgaaataagatagtgtttgcatgacatgtaggccaatatctgccatatagtaggggatcaTTGTTGTGCCTGTTAACAGAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14062751 401 - 49578535 CACAGAGTTCTCATCGATGTGCTCCACCCATGCCTGCCCGCTGTGGGCGGGTGCTGCTGTATCCTCCAAGCCTCCCACAGTGGCCCTTTCTCCGCCTCTCAGTGTCTCCTTCCTGAGAGACCC-------------------TGCTGGTCCAGGTGATGCCAGCGGCTTCTCAGCCAGCAGGTTTACCACatggcatagccatgaagaggagggccatggagatacttggagtggggtccaagc-cccgacctgtccacttattagcaatgtgatcttgcacgaggggtctgccctgtctcaggctcaagtccc-cacttagacatggatgtga-gtcatgagaattaaataag---gtgtttgcatgacatgtaccccgatacctgccacacagtaggGGATTATGTTTGCGCC-GTTAACAGAGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178679527 393 + 195471971 TGCAGAGTTCTCGCCAAGAAGCTCCAGCCAGGCCTGCTTGCTTGGAGAGACT-CTCTGTCAACTACCAATCCTGCCAC----CTTCTTGCTTAGCTAAC--ATATCTTCTCCCTAGGAGCTCA-------------------TGTTAGTTCAGACAATGTCAAGGACTTCCTAGCCACCAGCTTTactgtgtagtatagtgattaagagcaaagacctaaaaatgcttgaactggg--ccgatcacctgtcttgtatatatactagcaaaatgacttggcacaaagggataaccctacctcaggatcaaatctctcactttggaattgatacaatagtagGAGGATTAAGCAAAGGTATGTCTATAAGACACATAGTATATTGTCTAGGATATGAT------CCAATATTGTGCCTGATAATAGGAG i mm10.chr1 C 0 C 0 e canFam3.chr7 36252260 0 + 80974532 C a score=24711.000000 s hg38.chr1_KI270759v1_alt 62226 11 + 425601 TTTTAGATATT s panTro4.chr1 224807824 11 + 228333871 TTTTAGATATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226167724 11 - 229942017 TTTTAGATATT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16773048 11 - 229590362 TTTTAGATGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223535470 11 - 227556264 TTTTAGATGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16585567 11 - 220367699 TTTTAGATATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82385217 11 + 85787240 TTTTAGATGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14063152 11 - 49578535 TTTGAGATATT i calJac3.chr19 C 0 C 0 s mm10.chr1 178679920 11 + 195471971 ATTTACGAATT i mm10.chr1 C 0 C 0 e canFam3.chr7 36252260 0 + 80974532 C e nomLeu3.chr5 140056942 100 - 143122389 M a score=233001.000000 s hg38.chr1_KI270759v1_alt 62237 87 + 425601 AAGTGAGAGTGAGATGAGTGAGATGCTTTTGAACCAAAGGATATTGTGAGTCCCAGGAATCACGGTTTT---AAAGCAGCCTGT-GGAAGT s panTro4.chr1 224807835 87 + 228333871 AAGTGAGAGTGAGATGAGTGAGATGCTTTTGAACCAAAGGATATTGTGAGTCCCAGGAATCACGGTTTT---AAAGCAGCCTGT-GGAAGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226167735 87 - 229942017 AAGTGAGAGTGAGATGAGTGAGAGGCTTTTGAACCAAAGGATATTGTGAGTCCGAGGAATCATGGTTTC---AAAGCAGCCTGT-GGAAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140057042 87 - 143122389 AAGTGAGAGTGAGATGAGTGAGAGGCTTTTGAACCAAAGGATATCGTGAGTCCCAGGAATCATGGTTTT---AAAGCAACCTGT-GGAAGT i nomLeu3.chr5 M 100 C 0 s rheMac3.chr1 16773059 81 - 229590362 ------AAGGCAGATGAGTGAGAGGCTTTTGAACGAAAGGATATTGTGAGTCCCAGGAATCATGGTTTT---AAAGCCACCTGT-GGAAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223535481 81 - 227556264 ------AAGACAGATGAGTGAGAGGCTTTTGAACGAAAGGATATTGTGAGTCCCAGGAATCATGGTTTT---AAAGCAACCTGT-GGAAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16585578 80 - 220367699 ------AAGACAGATGAGTGAGAGGCTTTTGAAC-AAAGGATATTGTGAGTCCCAGGAATCATGGTTTT---AAAGCAACCTGT-GGAAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82385228 81 + 85787240 ------AAGACAGATGAGTGAGAGGCTTTTGAATGAAAGGATATTGTGAGTCCCAGGAATCATGGTTTT---AAAGCAACCTGT-GGAAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14063163 82 - 49578535 ------AAGACAAATGACTGAGAGGCTTTGGAAACAAAGGATATTGTGAGTCCCTGAAATCGTGATTTT---AAAGCAACCCATGGGAAGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178679931 84 + 195471971 ------AAGACAAATAGGTAAGAACATTTTTACCCCAAGACTGCACTAGCTCTCTAAAATTAGGATTTTTAAAAAGCAATTGAT-GAGTTA i mm10.chr1 C 0 C 0 e canFam3.chr7 36252260 0 + 80974532 C a score=965452.000000 s hg38.chr1_KI270759v1_alt 62324 302 + 425601 GCT-GGACATTGCTGAG----AATAAAATATACGAAG-----------------------GAACAGTGATCCGTGTTGGCACTCTGCCTTCCCTGTCTATACCTTCCAAAAGAGGTGTAGATGCCCTTCTTAACCTCTCCTCCCTTGACAGACCCAAATTCTTTTCTATTTGCAACTCACCTTAAGAACTACTGGGATTG---------GGCTGCCAAAACTGTTTCTTCCTT-----------------------------TTCAGTTATTTAAATTAGAACATGCCCCCAAGTTTCTCCA-TAGAAATAA-AACACAGGTCTTAAATCTCCCAGGGAATCTTTAAAGAT----GTTCTAATTTTGCCCGGGT s panTro4.chr1 224807922 302 + 228333871 GCT-GGACATTGCTGAG----AATAAAATATACGAAG-----------------------GAACAGTGATCCGTGTTGGCACTCTGCCTTCCCTGTCTATACCTTCCAAAAGAGGTGTAGACGCCCTTCTTAACCTCTCCTCCCTTGACAGACCCAAATTCTTTTCTATTTGCAACTCACCTTAAGAACTACTGGGATTG---------GGCTGCCAAAACTGTTACTTCCTT-----------------------------TTCAGTTATTTAAATTAGAACACGCCCCAAAGTTTCCCCA-TAGAAATAA-AACACAGGTCTTAAATCTCCCAGGGAATCTTTAAAGAC----GTTCTAATTTTGCCTGGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226167822 302 - 229942017 GCT-GGCCATTGCTGAG----AATAAAATATATGAAG-----------------------GAACAGTGATCCGTGCTGGCACTCTGCCTCCCCTGTCTATACCTTCCAAAAGACGTGTAGACGCCCTTCTTAACCTCTCTTCCCTCGACAGACCCAAACTCTTTTCTATTTGCAACTCACCTTAAGAACTACCGGGATTG---------GGCTGCCAAAAGTGTTTCTTCCTT-----------------------------TTCAGTTATTTAAGTTAGAACATGCCCCCAAGTTTCCCCA-TAGAAATAA-AACACAGGTCTTAAATCTCCCAGGGAATCTTTAAAGAC----GTTTTCATTTTGCCTGGGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140057129 302 - 143122389 GCT-GGACATTGCTAAA----AATAAAATATACGAAG-----------------------GAACGGTGATCCGTGTTGGCGCTCTGCCTCCCCTGTCTATACCTTCCAAAAGAGGTGTAGACGCCCTTCTTAACCTCTCCTCCCTTGACAGACCCAAACTCTTTTCTATTTGCAACTCACCTTAAGAACTGCTGGGATTG---------GACTGCCAAAAGTGTTTCTTCCTT-----------------------------TTCAGTTATTTAAATTAGAACATGCCCCCAAGTTTCCCCA-TAGAAATAA-AACACAGGTCTTAAATCTCCCAGGGAATCTTTAAAGAT----ATTGTGATTTTGCCTGGGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16773140 300 - 229590362 GTT-GGACATTGCTAAG----AATAAAATATACGAAG-----------------------GAACAGTGATCCGTGTTGGCACTCTGCTTCCTTTGTCTGTACCTTCCAAAAGAGGTATAGACGCCCTTCTTAACCTCTCCTCACTTGACAGACCCAAACTGTTTTCTATTTGCAACTCACCTTGAGAACTATTGGTACTG---------GGCTGCCAAAAGTGCATTTTCCTT-----------------------------TTCAGTTATTTGAATTAGCACATGCCCCCAAGTTTCCCCA-TAGAAATAA-AAAACAGGTCTTAAATCTCCCAGGGAATC--TAAAGAT----GATCTGATTTTGCCTGGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223535562 300 - 227556264 GTT-GGACATTGCTAAG----AATAAAATATACGAAG-----------------------GAACAGTGATCCGTGTTGGCACTCTGCTTCCTTTGTCTGTACCTTCCAAAAGAGGTATAGACGCCCTTCTTAACCTCTCCTCACTTGACAGACCCAAACTGTTTTCTATTTGCAACTCACCTTGAGAACTATTGGTACTG---------GGCTGCCAAAAGTGCATTTTCCTT-----------------------------TTCAGTTATTTGAATTAGCACATGCCCCCAAGTTTCCCCA-TAGAAATAA-AAAACAGGTCTTAAATCTCCCAGGGAATC--TAAAGAT----GATCTGATTTTGCCTGGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16585658 301 - 220367699 GTT-GGACATTGCTAAG-----ATAAAATATACGAAG-----------------------GAACAGTGATCCGTGTTGGCACTCTGCTTCCTTTGTCTGTACCTTCCAAAAGAGGTGTAGACGCCCTTCTTAACCTCTCCTCACTTGACAGACCCAAACTCTTTTCTATTTGCAACTCACCTTGAGAACTATTGGTACTG---------GGCTGCCAAAAGTGCATTTtcctt-----------------------------ttcagttatttaaattaGCACATGCCCCCAAGTTTcccca-tagaaataa-aaaacaggtCTTAAATCTCCCAGGGAATCTTTAAAGAT----GATCTGATTTTGCCTGGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82385309 302 + 85787240 GTT-GGACATTGCTAAG----AATAAAATATACGAAG-----------------------GAACAGTGATCCGTGTTGGCACTCTGCTTCCTTTGTCTGTACCTTCCAAAAGTGGTGTAGACGCCCTTTGTGACCTCTCCTCACTTGACAGACCCAAACTCTTTTCTATTTGCAACTCACCTTGAGAACTATTGGTACTG---------GGCTGCCAAAAGTGCATTTTCCTT-----------------------------TTCAGTTATTTGAATTAGCACATGCCCCCAAGTTTCCCCA-TAGAAATAA-AAAGCAGGTCTTAAATCTCCCAGGGAATCTTTAAAGAT----GATCTGACTTTGCCTGGAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14063245 301 - 49578535 GCT-GGGCATTGCGGAG----AGTAAAACATACGAAG-----------------------GCACAGCGGTCCATGCT-GCACTCTGCTTCCTCTGTCCAGACCTTGTAAAAGAGGTGTAGACGCCCTTCCTAACCTCTCCTCCCTTCACAGACCCGAACTCTCTTCTGTTTGCAACTCACCTTAAGAACTGTTGGGACTG---------GGCTGCCAAAAGCACTTTTTCCTT-----------------------------TTCAGTTATTTAAATTAGCACATGCCCCCAACTTTCCCTA-TAGATATTG-AAAACAGATCTTCAATTTCCTAGGGAATCTTTAAAGAT----GTTCTAATATTGCCTGGGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178680015 348 + 195471971 GTCAGGGCATCACTA-------ATAACTTAGATGGAGTTTATTGATGTTGTATTGTTTATAGATGAAGGTCTATATTGGCATCCAACTGTCACTACCTGTACCTTCTGAAAGGGTTGGGGAAG--------AACCTCTTGTACCTAGGAGGACCTTTACTGCTTTCTACTTTAGTTTCATATTTAACA-TGTTGGAACTGGTCACAAAAGGCTTCCCACTCGGTTTTCTCCTTCCTGTGACCCCGCCCCCTTCCCCCACTTCTTTAGGTAATGCAATGAGCACATGCCACCAGGTCTCGGTATTCAAAAGTA-AGAGCAGGTCTCAAGTCT--GAAGAAA-----AAAAAT--TAGTTCTGATctagacatggt i mm10.chr1 C 0 I 253 s canFam3.chr7 36252260 265 + 80974532 ACT-GGCCATTCCTAAATAAAGGTAAAATATCCAAAG-----------------------GGCTGATGATCTACAGTAGCACTCTGCTTCCACTGCTCAGTCCTTCTAAAAGAAGTGTGGACCCCCTTCCTAATCTCTCCTGCCCTGA-GGACCTTAACCCTTTTCTATTTGCAACTCACTTTAAATATGGTTGGAATGA---------GGTTGCCAAAAGTGT------CTT------------------------------------------------------------------CTA-AAGAAATAAGAGAGCAGGTCCTAAATCTTCCAAGGAATC--AAAAAACAATGGTCTTAATTTTTCTTGGGT i canFam3.chr7 C 0 C 0 a score=605975.000000 s hg38.chr1_KI270759v1_alt 62626 211 + 425601 GAGTTTTCTGTTGGATGAGGACTGGATTTTTAATGTAAGTGGCCTCCATATCCCCTGCATCAGGGGTGTGGGAAGCAGCAGAGAGCATTGACCGTCACTGGAATGGAGAGGCGGCCACGGTCA-AGGGTGTATTACTCAGAGAAGATAGTTGGTACATACAGCAAATGATCCTGGAGACCTCAGGCTTTTTCTCACTTGGGTC--TGTCATGGT s panTro4.chr1 224808224 211 + 228333871 GAGTTTTCTGTTGGATGAGGACTGGATTTTTAATGTAAGTGGCCTCCATATCCCCTGCATCAGGGGTGTGGGAAGCAGCAGAGAGCATTGACCGTCACTGGAATGGAGAGGCGGCCACGGTCA-AGGGTGTATTACTCAGAGAAGATAGTTGGTACATACAGCAAATGATCCTGGAGACCTCAGGCTTTTTCTCACTTGGGTC--TGTCATGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226168124 213 - 229942017 GGGTTTTCTGTTGGATGAAGACTGGATTTTTCATGTAAGTGGCCTCTGTATCCCCTGCATCAGGGGTGTGGGAAGCAGCAGAGAGCACTGACCGCCACTGGAATGGAGAGGTGGCCACAGTCA-AGGGTGTATTAGTCCGAGAAGATACTTGGTACATACAGCAAATGATCCTGGAGACCTCAGGTTATTTCTCACTTGGGTCTGTGTCATAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140057431 211 - 143122389 GGGTTTTCTGTTGGATGAGGACTGGATTTTTAATGCAAGTGGCCTCTATATCCCCTGCATCAGTGGTGTGGGAAGCAGCAGAGAGCATTGACCATCACTGGAGTGGAGAGGCGGCCACGGTCA-AGGGTGTATTAGTCCGAGAAGATAGTTGGTACATACAGCAAATGATCCTGGGGACCTCaggttatttctcacttgggtc--tgtcatagg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16773440 210 - 229590362 GAGTTTTCTGTTGGATGAGGACTGGATTTTGACTGTAAGTGGC--CTCTATCCCCTGCATCAGTGGTGTGGGAAGCAGCAGAGAGCACTGACCGTCACTGGAATGGAGAGGCGGCCACGGGCA-AGGATGTATTAGTCAGAGAAGGCAGTTGGTATATAGAGCAAAGGATCCTAGAGAGCTCaggttctttttcacttaggtct-ggatatagg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223535862 210 - 227556264 GAGTTTTCTGTTGGATGAGGACTGGATTTTGACTGTAAGTGGC--CTCTATCCCCTGCATCAGTGGTGTGGGAAGCAGCAGAGAGCACTGACCGTCACTGGAATGGAGAGGCGGCCACGGGCA-AGGATGTATTAGTCAGAGAAGGTAGTTGGTATATAGAGCAAAGGATCCTAGAGAGCTCAGGTTCTTTCTCACTTAGGTCT-GGATATAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16585959 207 - 220367699 GAGTTTTCTGTTGGTTGAGGACTGGATTTTTACTGTAAGTGGCCTCTCTATCCCCTGCATCAGTGGTGTGGGAAGCAGCAGAGAGCACTGACCATCACTGGAATGGAGAGGCGGCCACGGGCA-AGGATGTATTAGTCAGAGAAGATAGTTGGTATATAGAGCAAATGATCCTAGAGACCTCAGGTTCTTTCTCACTTAGGTC------ATAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82385611 205 + 85787240 GAGTTTTCTGTTGGATGAGGACTGGATTTTTACTGTAAGTGGC--CTCTATCCCCTGCATCAGTGGTGTGGGAAGCAGCAGAGAGCACTGACCGTCACTGGAATGGAGAGGCGGCCACGGGCA-AGGATGTATTAGTCAGAGAAGATAGTTGGTATATAGAGCAAATGATTCTGGAGACCTCaggttctttctcacttaggtc------atagg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14063546 211 - 49578535 GAGTTTTCTGTTGGCTGAGGACTGGATTTTTAATGTAAGTGGCCCCTATGTCCCCTGCATCAGTGGTG-GAGAAGCAGCGGCGAGCATTGATGGTCACTGGAGTGAAGGGGTGGCCACGGTCA-AGGTTGTGTTATTCAGAGAAG-TGGTTGGTACATACAGCACGTCATCCTGAAGACCTCAGGTTCTCTCTCACTTGGGTCTGTGTCATAGT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36252525 157 + 80974532 GAATGTTCCATTAGATGAGAGTTAGGTTTAACAAATGTGT-----CTATGTCCCCTGCATCAGTCACGTGGGAAGCAGCAGAAAGCATTGACAGTTGCTGTGGAATAGAGGTGGCCATGGTCATAGAGTGTA----TCAGAGAGGCTAACTGGTAT----AACAAATGAT-------------------------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178680363 253 + 195471971 I a score=75587.000000 s hg38.chr1_KI270759v1_alt 62837 44 + 425601 GGGTGTTTGGTAGGTGGCCTTCTGCTGCGATGTGAG-GACTCAGA s panTro4.chr1 224808435 44 + 228333871 GGGTGTTTGGTAGGTGGCCTTCTGCTGTGATGTGAG-GACTCAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226168337 44 - 229942017 GAGTGTTTGGTGGGTGGCCTTCCGCTGTGATGTGAG-GACTCAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140057642 12 - 143122389 gggtgtttggtg--------------------------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16773650 44 - 229590362 gggtgtttggtgggtggccttccgctgtgacgtgag-cactcaga i rheMac3.chr1 C 0 I 413 s macFas5.chr1 223536072 40 - 227556264 GGGTGTTTggtgggtggccttccgctgtgacgtgag-cact---- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16586166 40 - 220367699 GGGTGTTTGGTGGGTGGCCTTCCACTGCGACGTGAG-CACT---- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82385816 44 + 85787240 gggtgtttggtgggtgaccttccactacgacgtgag-cactcaga i chlSab2.chr25 C 0 I 412 s calJac3.chr19 14063757 41 - 49578535 GGGTGTTTggtgggtggcctt-tgctgcgacgtggg-gacaca-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178680616 35 + 195471971 GGGTGTTAGGAGTGT-------CACTGGTATATGAGATAGTC--- i mm10.chr1 I 253 C 0 e canFam3.chr7 36252682 0 + 80974532 C a score=347337.000000 s hg38.chr1_KI270759v1_alt 62881 254 + 425601 CTAGAGACCTCaggttatttctcacttgggtc--tgtcatagggggtgtttggtaggtggccttccgctgtgatgtgaggactcagacttcttccaccaaatgcgtcaccatcttccaggggcctcaagagtccttcaccagaccttctgtaaccagccaggaaatgagggaagatagagtgtgtggaggatctcacaggagga-tttggggcccagctttgcatggaagtgatgtatgttgcttacatctatattc s panTro4.chr1 224808479 254 + 228333871 CTAGAGACCTCaggttatttctcacttgggtc--tgtcatagggggtgtttggtaggtggccttccgctgtgatgtgagtactcagacttcttccaccaaatgcgtcaccatcttccaggggcctcaggagtccttcaccagaccttctgtaaccagccaggaaatgagggaagagagagtgtgtggaggatctcacaggagga-tttggggcccagctttgcctggaagtgatgtatgttgcttacatctatattc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226168381 256 - 229942017 CTAGAGACCTCaggttatttctcacttgggtctgtgtcatagggggtgtttggtgggtggccttccgctgtgatgtgaggactcagacttcttccaccaaatgcgtcaccatcttccaggtgcctggagagtccttcaccagaccttctgtaaccagccaggaaatgagggaagagagagtatgtggaggatctcgcaggagga-tttggggcccagctttgcctggaagtgatgtacgttgcttacatctatattc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140057654 201 - 143122389 -------------------------------------------------------ggtggccttccgctgtgatgtgaggactcagacttcttccaccaaatgcgtcaccgtcttccaggggcctcaagagtccttcaccagaccttctgtaaccagctgggaaatgagggaagagagagtgtgtggaggatctcacaggagga-tttagggcccagctttgcctggaagggatgtacgttgcttacatctatattc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223536112 173 - 227556264 -----------------------------------------------------------------------------------cagatttcttccaccaaatgtgtcaccatcttccaggggcctcaagagtccttcaccagaccttctgtaaccagccgggaaatgaggggagaaggcatgtgtggaggatctcacaggagga-tttggggcccggctttgcctggaaggcatgtgcattgcttacatctttattc i macFas5.chr1 C 0 I 250 s papAnu2.chr1 16586206 173 - 220367699 -----------------------------------------------------------------------------------CAGATTTCTTCCACCAAATGTGTTACCATCTTCCAGGGGCCTCAAGAGTCCTTCACCAGGCCTTCTGTAACCAGCCGGGAAATGAGGGGAGAGAGCATGTGTGGAGGATCTCACAGGAGGA-TTTGGGGCCCGGCTTTGCCTGAAAGGGATGTACATTGCTTACATCTTTATtc i papAnu2.chr1 C 0 I 242 s calJac3.chr19 14063798 165 - 49578535 -------------------------------------------------------------------------------------gacttcttccaccaaatgtgtca-------ccaggggcctcgagagtcctccacaagatcttctgtaaccagccaggaaataagggaagagagagtgtatggaggatctcacaggaggattttggggcccagctttgcctgaaagggatgtgcattgcttacatctatattc i calJac3.chr19 C 0 C 0 s mm10.chr1 178680651 232 + 195471971 CTGAATACCTTGGGTCACTTCTCAGACGTGCT-GTGTCATATggggtg-------agaagccttccattatcatatggggacccaggcttccttcatcaacagcgtccccatccttcatgggcctcaag-ttcctccactagattgtctgtaaccagccaagaaat----ggtgtgtgtgtgtgtgtaggctcccatcgtggg--tttgaggcctagtct----------gggtatacagtgcttccattcatactc i mm10.chr1 C 0 C 0 s canFam3.chr7 36252682 202 + 80974532 --------CTCAGGGTATTTTTTACTCATGGCCCTGCTGTATTGGGTGTTTGGTGCATGGccttccact----------------------tgcctccaa----gtcacctt------ggggcat--ggaatctgccaccagatctcacacaagcagccaagaaatgagggaagagagagattgtggagaaccttatagggggg--------ccca-----tcctggaaggggcataggtaacttccttccacgttc i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16773694 413 - 229590362 I e chlSab2.chr25 82385860 412 + 85787240 I a score=8085.000000 s hg38.chr1_KI270759v1_alt 63135 7 + 425601 cagtgac s panTro4.chr1 224808733 7 + 228333871 cagtgac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226168637 7 - 229942017 cactgac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140057855 7 - 143122389 cagtgac i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14063963 7 - 49578535 cagtgac i calJac3.chr19 C 0 C 0 s mm10.chr1 178680883 4 + 195471971 ---tgcc i mm10.chr1 C 0 I 3 s canFam3.chr7 36252884 7 + 80974532 cagtggt i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16773694 413 - 229590362 I e chlSab2.chr25 82385860 412 + 85787240 I e papAnu2.chr1 16586379 242 - 220367699 I e macFas5.chr1 223536285 250 - 227556264 I a score=2997.000000 s hg38.chr1_KI270759v1_alt 63142 1 + 425601 a s panTro4.chr1 224808740 1 + 228333871 a i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226168644 1 - 229942017 a i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140057862 1 - 143122389 a i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16774107 1 - 229590362 a i rheMac3.chr1 I 413 C 0 s macFas5.chr1 223536535 1 - 227556264 a i macFas5.chr1 I 250 C 0 s chlSab2.chr25 82386272 1 + 85787240 a i chlSab2.chr25 I 412 C 0 s calJac3.chr19 14063970 1 - 49578535 a i calJac3.chr19 C 0 C 0 s mm10.chr1 178680890 1 + 195471971 a i mm10.chr1 I 3 C 0 s canFam3.chr7 36252891 1 + 80974532 g i canFam3.chr7 C 0 C 0 e papAnu2.chr1 16586379 242 - 220367699 I a score=10505.000000 s hg38.chr1_KI270759v1_alt 63143 2 + 425601 ag s panTro4.chr1 224808741 2 + 228333871 ag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226168645 2 - 229942017 ag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140057863 2 - 143122389 ag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16774108 2 - 229590362 ag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223536536 2 - 227556264 ag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16586621 2 - 220367699 ag i papAnu2.chr1 I 242 C 0 s chlSab2.chr25 82386273 2 + 85787240 ag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14063971 2 - 49578535 ag i calJac3.chr19 C 0 C 0 s mm10.chr1 178680891 2 + 195471971 ag i mm10.chr1 C 0 C 0 s canFam3.chr7 36252892 2 + 80974532 ag i canFam3.chr7 C 0 C 0 a score=29679.000000 s hg38.chr1_KI270759v1_alt 63145 8 + 425601 aatccagt s panTro4.chr1 224808743 8 + 228333871 aatccagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226168647 8 - 229942017 aatccagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140057865 8 - 143122389 aatccagt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16774110 8 - 229590362 aaTTCAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223536538 8 - 227556264 aaTTCAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16586623 8 - 220367699 aattcagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82386275 8 + 85787240 aaTTCAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14063973 8 - 49578535 agtccagt i calJac3.chr19 C 0 C 0 s mm10.chr1 178680893 8 + 195471971 aatccagt i mm10.chr1 C 0 I 1589 e canFam3.chr7 36252894 0 + 80974532 C a score=895276.000000 s hg38.chr1_KI270759v1_alt 63153 366 + 425601 cTTTgctgggcgtggtggctcacacttgtaatcccagcactgtgggaggccgaggtgggtggattgcttgagtacaggagttgaagaccagcctgggcatcctggcgaaaacccgtctctattaaaaaaaatacaaaaattagccaagtatggtggcatgcgcctgtagtgtcagctacttgggaggctgaaacgggaagatcgcctgagcccaggaggcggaggctgcagtgagccgagattgcaccactgcactccagcagcactgcactccagcct-ggtgacagagcaagactctgAATTGGGAAAAAAGAagagtgagagagagagagagagagagagagagagacagacagacagacagac s panTro4.chr1 224808751 346 + 228333871 cTTTgctgggcatggtggctcacacttgtaatcccagcactgtgggaggccgaggtgggtggattgcttgagcacaggagttgaagaccagcctgggcatcctggcgaatacccgtctctattaaaaaaaatacaaaaattagccaagtatggtggcatgtgcctgtagtgtcagctacttgggaggctgaaacgggaagatcgccttagcccaggaggcggaggctgcggtgagccaagattgcaccactgcactccagcagcactgcactccagcct-ggtgacagagcaagactctgAATAGGGAAAAAAGAAGAGTGACAGAGAGAGAGAG--------------------ACACAGACAGAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226168655 330 - 229942017 cTTTgctgggcgtggtggctcacacttgtaatcccagcactttgggaggccgaggtgggtggattgcttgagcacaggagttgaagaccagcctgggcatcctggtgaaaacccatctctatt-aaaaaaatacaaaaattagccaagtacggtggcatgcacctgtagtctcagctacttgggaggctgaaatgggaggatcgcttgagcccaggaggcagaggctgcagtgagctgagactgcac----------------cactgccctccagcct-ggtgacagagcaagactct-aatcaggaaaaaagaaGAGTGAGAGAGAGAGAGAG------------------ACAGACAGACAGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140057873 329 - 143122389 cTCTgtcgggcgcggtggctcacacttgtaatcccagctctttgggaggccaaggtgggtggattgcttgagcacaggagttgaagaccagcctgggcatcctggcaaaaacccatctctatt-aaaaaaatacaaaaattagccaagtatggtggcatgcacctgtagtctcagctactggggaggctgaaatgggaggatcgcttgagcccaggaggcagaagctgcagtgagctgagactgcac----------------cactgcactccagcct-ggtgacagagcaagactctgaattgggaaaaaagaagagtgagagagagagagag--------------------agacagacagac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16774118 324 - 229590362 CTCTgccgggcgtggtggctcacacttgtaatcccagcactttgggaggctgaggtgggtggattgcttgagcccaggagttgaagaccagcctaggcatcatagagaaaactggtctctatt---aaaaatacaaaaattagccaagtatggtggcatgcgcctgtagtcgcacctacttgggaggctgagatgggagaactgcttgagcccgggaggcagaggctgcagtgagctgagatcgcac----------------cactgcactccagcctgggtgacagagcaagactctgaatcaggaaaaaagaagcgtgagagagagag------------------------aaatagacagac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223536546 324 - 227556264 CTCTgccgggcgtggtggctcacacttgtaatcccagcactttgggaggctgaggtgggtggattacttgagcccaggagttgaagaccagcctgggcatcatagagaaaactggtctctatt---aaaaatacaaaaattagccaagtatggtggcatgcgcctgtagtctcacctacttgggaggctgagatgggagaactgcttgagcccgggaggcagaggctgcagtgagctgagatcgcac----------------cactgcactccagcctgggtgacagagcaagactctgaatcaggaaaaaagaagcgtgagagagagag------------------------aaatagacagac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16586631 332 - 220367699 ctctgccgggcatggtggctcacacttgtaatcccagcactttggaaggctgaggtgggtggattgcttgagcccaggagttgaagaccagcctgggcatcatagagAAAaccggtctctatt---aaaaatacaaaagttagccaagtatggtggcatgcgcctgtagtctcagctacttgggaggctgagatgggagaactgcttgagcccgggaggcagaggctgcagtgagctgagattgcac----------------cactgcactccagcctgggtgacagagcaagactctgaatcaggaaaaaagaagcgtgagagagagagagaa----------------aaacagacagacagac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82386283 332 + 85787240 CTCTgccggacgtggtggctcacacttgtgatcccagcactttgggaggctgaggtgggtggattgcttgagcccaggagttgaagaccagcctgggcatcatagagaaaaccagtctctatt---aaaaatacaaaaattagccaagtatggtggcatgcgcctgtagtctcagctacttgggaggctgagatgggagaattgcttgagcccgggaggcagaagctgcagtgagctgagattgcac----------------cactgcactccagcctgggtgacagagcaagactctgaatcaggaaaaaagaaGCGTgagagagagagagag----------------aaacagacagacagaC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14063981 309 - 49578535 cTCTgctgggcatggtggctcacacttataatcccagcacttttg--------ggtgggtggattgcttgagc-caggtgttgtatgccgacttgaacaacatggagaaacctcatctctact---aaaaatacaaaaattatccagggatggtggcatgaacctgtagtctcagctacttggaaggctgagatgggaggattgcttgagcccaggaggcagaggctgcagtgagccgagattgcac----------------cactgcactccagcctggctgacagagcaagactgtgaatcagtaaaaaagaaG------AGAGAGAG------------------------AGACAGACAGAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178680901 1589 + 195471971 I e canFam3.chr7 36252894 0 + 80974532 C a score=2458560.000000 s hg38.chr1_KI270759v1_alt 63519 812 + 425601 agTttagtctcttgatctcaccttcccactggtgaagctggggaagccaatctacccgtgagcccaggagaaaaaggaa-caagtcgagtgaacacatagcATAGTTTT-GTTACGCCGGAC-AAGATACAGGGAAACGTGGAGTGAGTTAAATGTGGTTGATAAAATGCCGGGTGACTTTCTCTAGAGCGTTTGAGAGT--GTTCATGTCTCTTGCTATCTTGAAAGAAAGTGGGAAACGTTGATCATTATCCTAAGATATTAGCATTCTTGGACGGTCGAAATTTTCACTTAACTGGgtgctttctaatttacaaaatctaaca-tatggattatttcctttaaccccacagtaggcctatgaggtaggtggggcaggtgttagatcttccttttacagttaaggaatatgatgcttagagaaatggactgattgtggccacacagccagtggcagaaccagcaccagctct-cccCTTGCCCAGGGAATGGCTTTGCCTACCGCGGTTTCTTCCAACTTTCCTAGGCTACCCCAAAGTAA---GCTGCCGACATCTTTTCCAGATATGGTTCCTTTTCAGA-CCTGGTGTCACAAAGAAAAGAACTCGT---TTTACCTGCAGGGGCCTCACTGCCCCTAGACTTTTGGATAGAATCTTCTGGGATGTGTATATAAATATAATGAGGAACCAGTGGCGTCCTGTGCAGTGCTTCACATTCTAAC-CTTGGAAGTAACCTTCTAGGGCAGGAACAGAGAAGGGCTTCTTTGCATCATGGGATAATTTGC-----TTTTTTTTGTTTGCAGTTTTAAAATATACCATTTAG s panTro4.chr1 224809097 812 + 228333871 AGTttagtctcttgacctcaccttcccactggtgaagctggggaagccaatctacccgtgagccaaggagaaaaaggaa-caagtcgagtgaacagttagcATAGTTTT-GTTACGCTGGAC-GAGATACAGGGAAACGTGAAGTGAGTTAAATGTGGTTGATAAAATGCCGGGTGACTTTCTCTAGAGTGTTTGAGAGT--GTTCATGTCTCTTGCTATCTTGAAAGAAAGTGGGAAACGTTGATCATTATCCTAAGATATTAGCATTCTTGGACGGTCGAAATTTTTGCTTAACTGGgtgctttctaatttacaaaatctaaca-tatggattatttcctttaaccccacagtaggcctatgaggtaggtggggcaggtgttagaccttccttttacagataaggaatatgatgcttagagaaatggactgattgtggccacacagccaatggcagaactagcacCAGCTCT-CCCCTTGCCCAGGGAATGGCTTTGCCTACCGCGGTTTCTTCCAACTTTCCTAGGCTACCCCAAAGTAA---GCTGCCAACATCTTTTCCAGATATGGTTCCTTTTCAGA-CCTGGTGTCACAAAGAAAAGAACTCGT---TTTACCTGCAGGGGCCTCACTGCCCCTAGACTTTTGGATAGAATCTTCTGGGATGTGTATATAAATATAATGAGGAACCAGTGGCGTCCTGTGCGGTGCTTCACGTTCTAAT-CTTGGAAGTAACCTTCTAGGGCAGGAACAGAGAAGGGCTTCTTTGCATCATGGGATAATTTGC-----TTTTTTTTGTTTGCAGTTTTAAATTATACCATTTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226168985 812 - 229942017 AGTTTAGTCTGTTGTCCCCACCTTCCCACTGGTGAAGCTGGGGAAGCCAATCTACCCATGAGCCAAGGAGAAAAATGAA-CAAGTCGAGTGAACACATAGCATAGTTTT-GGTACACCAGAC-AAGGTACAGGGAAATGTGAAGTGAGTTAGATGTAGTTTATAAAATGCCTGGTGACTTTTTCTAGAGTGTTTGAGAGT--GTTCATGTCTCTTGCTATCTTGAAAGAAAGTGGGAAACATTGATCATTATCCTAAGATATTAGCATTCTTGGACGGTCGAACTTTTCACTTAACTGGgtgctttctaatttacaaaatctaaca-tataca-tatttcctttaaccccacagtaggcctatgaggtaggtggggcaggtgttggatcttccttttacagataaagaatatgatgcttagagaaatggactgattgtggccgcacagccaatggcagaaccagcacCAGCTCTCCCCCTTGCCCAGGGAATGGCTTTGCCTACCACGGTTTCTTCCAACTTTCCTATGCTACTCCAAAGTAA---GCTGCCAACATCTTTTCCAGATATGGTTCCTTTTCAGG-CCTGGTGTCACAAAGAAAAGAACTCGT---TTTACCTGCAGAGGCCTCACTGCCGCTAGACTTTTGGATAGAATTTTCTGGAATGTGTATATAAATATAATGAGGAACGAGTGGCGTCCTGCGGGGTGCTTCACTGTCTAAT-CTTGGAAATAACCTTCTAGGGCAGGAACAGAGAAGGGCTTCTCTGCGTCATGGGATGATTTGC-----TTTTTGTTGTTTGCGGTTTTAAAATGTACCATTTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140058202 808 - 143122389 agTttagtctcttgaccccaccttcccactggtgaagctggggaagccaatctacccatgagccaaggagaaaaaggaa-caagtcaagtgaacacatagcatagttct-ggtacaCCAGAC-AAGGCACAGGGAAACGTGAAGTGACTTAAATGTGGTTGACAAAATACCTGGTGACTTTTTCTAGGGTGTTT--GAGT--GTTCATGTCTCTTGCTATCTTGAAAGAAAGTGGGAAACATTGATCATTATCCTAAGATATTAGCATTCTTGGACGGTTGAACTTTTCACTTAACTGGgtgctttctgatttacaaaatctaaca-tataca-tatttcctgtaaccccgcaggaggcctaggaggtaggtggggcaagtgttagatcttccttttacagataaggaatatgatgcttagagaaatggactgattgtggccacacagccaatggcagaaccagcacCAGCTCT-CCCCTTGCCCAGGGAATGGCTTTGCCTACCACGGTTTCTTCCAACTTTCCTAGGCTACCACAAAGTAA---GCTGCCAACATCTTTTCCAGATATGGTTCCTTTTCAGG-CCTGGTGTCACAAAGAAAAGAACTCGT---TTTACCTGCAGGGGCCTCACTGGCCCTAGACTTTTGGACAGAATTTTCTGGGATGTGTATATAAATGTAATGAGGAACCAGTGGCGTCCTGCGGGGTGCTTCACGGTCTAAT-CTTGGAAGTAACCTTCTAGGGCAGGAACAGAGAAGGGCTTCTTTGCATCATGGGATAATTTGC-----TTTTT-TTGTTTGCAGTTTTAAAATATGCCATTTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16774442 802 - 229590362 aatttagtctcctgaccccaccttcccactggggaagctggggaagccggtctacccatgagaccaggagaaaaaggaa-caagttgagtgaacacatagcATAGTTTT-GTTATGCTGGAC-AAGGTATAGGGAAACATGAAGTGAGTTAAATGTGGTTGATAAAATTCCTGGTGACTTTTTCTAGAGTGTTTGAGAGT--GTTCGTGTCTCTTGCTATCTTGAAAGAAAGTGGGAAGCATTGATCATTATCCTAAGACATTAGCATTCTTGGATTGTCGAACTTTTCACTTAACTGGgtgctttctaatttacaaaatctaaca-tatacatgatttcactgaaccccacagtaggcctatgaggtaggtggggcaggtgttagatcttccttttacagataaggaatatgctgcttagcgaaa-----------tGGCTGCACAGCCCACGGCAGAACCAGCACTGGCTCT-CCCCGTACCCGGGGAGTGGCTTTGCCTACCACGGCTTCTTCCAACTTTCCTAGGCTACCCCAAAGTAA---GCTGTCAACATCTTTTCCAGATATGGTTCCTTTTCAGA-CCT-GTGTCACAAAGAAAAGAACTCAT---TTTACCTGCCGGGGCCTCACTGCCCCTAGACTTTTGGATAGAATTTTCTGGGATGTGTATGTAAATATAATGAGGAACCAGTGGCGTCCTGCGGGGTGCTTCACGGTCTAAT-CTTGGAAGTAACCATCTAGGGCAGGAACAGAGAAGGGCTTCTTTGCATCATGGGATGATTTGC---TTTTTTTTTTGTTTGCAGTTTTAAAATATACCATTTAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223536870 802 - 227556264 aatttagtctcttgaccccaccttcccactggggaagctggggaagccggtctacccatgagaccaggagaaaaaggaa-caagttgagtgaacacatagcATAGTTTT-GTTATGCTGGAC-AAGGTATAGGGAAACATGAAGTGAGTTAAATGTGGTTGATAAAATTCCTGGTGACTTTTTCTAGAGTGTTTGAGAGT--GTTCGTGTCTCTTGCTATCTTGAAAGAAAGTGGGAAGCATTGATCATTATCCTAAGACATTAGCATTCTTGGATTGTCGAACTTTTCACTCAACTGGgtgctttctaatttacaaaatctaaca-tatacatgatttcactgaaccccacagtaggcctatgaggtaggtggggcaggtgttagatcttccttttacagataaggaatatgctgcttagcgaaa-----------tGGCCGCACAGCCCACGGCAGAACCAGCACTGGCTCT-CCCCGTACCCGGGGAGTGGCTTTGCCTACCACGGCTTCTTCCAACTTTCCTAGGCTACCCCAAAGTAA---GCTGTCAACATCTTTTCCAGATATGGTTCCTTTTCAGA-CCT-GTGTCACAAAGAAAAGAACTCAT---TTTATCTGCCGGGGCCTCACTGCCCCTAGACTTTTGGATAGAATTTTCTGGGATGTGTATGTAAATATAATGAGGAACCAGTGGCGTCCTGCGGCGTGCTTCACGGTCTAAT-CTTGGAAGTAACCATCTAGGGCAGGAACAGAGAAGGGCTTCTTTGCATCATGGGATGATTTGC---TTTTTTTTTTGTTTGCAGTTTTAAAATATACCATTTAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16586963 803 - 220367699 aattTAGTCTCTTGACCCCACCTTCCCACTGGGGAAGCTGGGGAAGCCAGTCTACCCATGAGAccaggagaaaaaggaa-caagttGAGTGAACACATAGCATAGTTTT-GTTATGCTGGAC-AAGGTATAGGGAAACATGAAGTGAGTTAAATGTGGTTGATAAAATTCCTGGTGACTTTTTCTAGAGTGTTTGAGAGT--GTTCGTGTCTCTTGCTATCTTGAAAGAAAGTGGGAAACATTGATCATTATCCTAAGACATTAGCATTCTTGGATTGTCGAACTTTTCACTTAACTGGGTGCTTTCTAATTTACAAAATCTAACA-TATACATGATTTCATTGAACCCCACAGTAGGCCTATGAGGTAGGTGGGGCAGGTGTTAGATCttccttttacagataaggaataTGCTGCTTAGCGAAA-----------TGGCCGTACAGCCAACGGCAGAACCAGCACCAGCTCT-CCCCGTGCCCAGGGAATGGCTTTGCCTACCACGGCTTCTTCCAACTTTCCTAGGCTACCCCAAAGTAA---GCTGTCAACATCTTTTCCAGATATGGTTCCTTTTCAGA-CCT-GTGTCACAAAGAAAAGAACTCAT---TTTACCTGCAGGGGCCTCACTGCCCCTAGACTTTTGGATAGAATTTTCTGGgatgtgtatgtaaatataatgAAGAACCAGTGGCGTCCTGCGGGGTGCTTCACGGTCTAAT-CTTGGAAGTAACCATCTAGGGCAGGAACAGAGAAGGGCTTCTTTGCATCATGGgatgatttgct--ttttttttttggttgcagttttaaaatataccatttac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82386615 802 + 85787240 aatttagtctcttgaccccaccttcccactggggaagctggggaagccggtctacccatgagaccaggagaaaaaggaa-caagttgagtgaacacatagcATAGTTTT-GTTATGCTGGAC-AAGGTATAGGGAAACGTGAAGTGAGTTGAATGTGGTTGATAAAATTCCTGGTGACTTTTTCTAGAGTGTTTGAGAGT--GTTCGTGTCTCTTGCTATCTGGAAAGAAAGTGGGAAACGTTGATCATTATCCTAAGACATGAGCATTCGTGGACTGTCGAACTTTTCACTTAACTGGgtgctttctaatttacaaaatctaaca-tatacatgatttcactgaaccccacagtaggcctatgaggtaggtggggcaggtgttagatcttccttttacagataaggaatatgctgcttagcgaaa-----------tGGCCGTACAGCCAACGGCAGAACCAGCACCAGCTCT-CCCCGTGCCCAGGGAATGGCTTTGCCTACCACGGCTTCTTCCAACTTTCCTAGGTTACCCCAAAGTAA---GCTGTCAACA--TTTTCCAGATATGGTTCCTTTTCAGACCCT-GTGTCACAAAGAAAAGAACTCAT---TTTACCTGCAGGGGCCTCACTGCCCCTAGACTTTTGGATAGAATTTTCTGGGATGTGTATGTAAATATAATGAAGAACCAGTGGCGTCCTGTGGGGTGCTTCACGGTCTAAT-CTTGGAAGTAACCATCTAGGGCAGGAACAGAGAAGGGCTTCTTTGCATCATGGGATGATTTGCT--TTTTTTTTTTGTTTGCAGTtttaaaatataccatttag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14064290 796 - 49578535 AGTTTCGTCTCTTGACCCCGCCTTCCCACCGGGGAAGCTGGGGAAGCCAATCTACCCATGAGCCCAGGAGAAAAGGGAG-CAAGTCGAGGGAACACGTAGCATAGG--T-GTTACGTGGGACAAAGGTCCAGGGATTCGAGAAGTGAGTTAAATGC-GTTGATAAAAATCCTGGTGATGTTTTCTGGAGTGTTTGAGAGTGCGTGTGTGTCTCTTGCTGTCTTGAAAGAAAGTGGGAAACATTGAGTATCATCCTAATATGTTAGCATTCTTGGATCGTCCAACTCTTCATGTCACTGAGTGCTTTCTAATTTGAGGAACAGAAca-tacacattatttcatttaaccccg--gtaggcgtatgaggtaggcggggcaggtgtgggatc-tccttttgcagacagggaatacgatgctcagagaccctgagtgactgtggccacgcagccaacggcaggatcagctccagcccT-C-----GCCCAGGGAGTGCCTTTACCTACCACGCCTTCTTCCAGCTTTCCTAGGCTACCCCCGCATCA---GCTGTCCACATCTTTTCCAGATACGGTTCCTGTTCAAA-----------CAAAGAAAAGGACTAGT---TTTACCTGCAGGGATCTCATCGCCCCCAGAATTTTGGATAGAATTATCCAGGTTGTGTGTATAAAT---ATGAGGGACCAGTGGCGTCCTGGGAGAGGCTTCGCGGTCTGAT-CTCGGAAGTGACCGTCTAGGGCAGGAACAGAGAAGGGCTTCTTTGCATTATGGGATGATCTGCTTATTGTGTTGTGGTTCGCAGTTTTAAAATATACTATTTAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36252894 763 + 80974532 agtctaggcatttgacctcagcttcatgcaggggaggctggaaaagtcaatctgtccatgtgtccagaagaaaaaggaagcaagttcagtgaacaC--AGCATAGTTTTCATTACATGGGCA-AAGATATGGGGAAACATAAAATGAATTAAGTGTGGCTGATCTACTTCCTACTGACTTTTTCTTGAGTGT---AGATG--GC-----TTCCCTGATATCTGGAAGGAAAGTGGAGAGCATGGATCCTTATCTGAAGAAGTTAGCATTCTTGGATTGCCCAGc--ttccatttactgggtgctttggagtttacaaaat--aatagtgtgcatctttttatttcatctcccagtaggcctgtga-gcaggcaggacagatgttagatcttcctcttataga----------------tggagaaatcaaaggacttgtgccacacagtgggtgacagagccagggcccCTGCT-C-----------------------CCTCCCACAGCTGCTTCAGTCCTGACCACCGTACCCCGGAGCCATCTGCTATCAACATCTTTCCCAGATCCGGCTCCT-TTCAGG-CACAGCACACCAAAGAAAACCATTGCTATATTGACCTACAGGGGCTTACCTGCCATTTTACTTTTGGCTGGAATGTTCTGGTTCGTGAACATAAATCTGATGACCAGCCAGTGGCACCCTGGACAGGGCTTTGTAGTCTCATGCTTGAGTGTAACCATCCAGGGCCTGAAC--ACAATTGCCTGTTTCCCTTGCTGAATCACATGC------CTTTTCTGTTTGAGATTTTGAA-TATATTATTTTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178680901 1589 + 195471971 I a score=439929.000000 s hg38.chr1_KI270759v1_alt 64331 129 + 425601 AAAATTATCAAAAGTAA--CATATTTGTTGTAAAATAAAATTTAAAATACATGAG--GAAGTTTAAATGAGACTT-TAAAAGTCGATGTCACCCGGATATAAACTATGTAACATTTGGGGATACTTCCTCCTAG s panTro4.chr1 224809909 129 + 228333871 AAAATTATCAAAAGTAA--CATATTTGTTGTAAAATAAAATTTAAAATACATGAG--AAAGTTTAAATGAGACTT-TAAAAGTCGATGTCACCCGGATATAGACTATGTAACATTTGGGGATACTTCCTCCTAG i panTro4.chr1 C 0 I 2717 s ponAbe2.chr1 226169797 129 - 229942017 AAAATTATCAAAAGTAA--CATGTTTGTTGTAAAATAAAATTTAAAATACATGAG--AAAGTTTAAATAAGACTT-TAAAAGTGGATGTCACCCAGATATAAACTATGTAACATTTGGGGATACTTCCTCCTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140059010 129 - 143122389 AAAATTATCAAACGTAA--CATGTTTGTTGTAAAATAAAATTTAAAATACATGAG--AAAGTTTAAATAAGACTT-TAAAAGTCGATGTCACCCAGGTATAAACTCTGTAACATTTGGGGATACTTCCTTCTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16775244 129 - 229590362 AAAATTATAAAAAGTAA--CATGTTTGTTGTAAAACAAAATTTAAAATGCATGAG--AAAGTTTAAATAAGACTT-TAGAAGTTGATGTCACCCAGATACAAACTACGTAACATTTGGGGATACCTCCTTCTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223537672 129 - 227556264 AAAattataaaaagtaa--catgtttgttgtaaaacaaaatttaaaatgcatgag--aaagtttaaataagactt-tagaagttgatgtcacccagatacaaactacgtaacatttggggatacctccttctag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16587766 129 - 220367699 aaaattataaaaagtaa--catgtttgttgtaaaacaaaatttaaaatacatgag--aAAGTTTAAATAAGACTT-TAGAAGTTGATGTCACCCAGATACAAACTATGTAACATTTGGGGATACCTCCTTCTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82387417 125 + 85787240 agaattataaaaagtaa--catgtttgttgtaaaacaaaatttaaaatGCATGAG--AAAGTTTAAATAAGACTT-TAGAAGTTGATGTCACCCAGATACAAACTATGTAACATTTGGGGATA----CTTCTAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14065086 129 - 49578535 AAAATCATAAAAAGTTA--CATGTTGGttataaaataaaatttaaaataCATGAA--AAAGTTTAAATAAGACTT-TAAAAGTCGATGTGGCCCGGATGAAAACTATGTAACATCTGGGTGTACTTCCTCCTAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178682490 112 + 195471971 AAAGTTATAAGAAGTAAAGCATACTTGTTTTAAAATAAAATGGAGACTGTGTGGGGAAAAAATTAGGTGTGATTTCTGAAAGCCCGTATCACATAGAAACGCATTATCTAGT---------------------- i mm10.chr1 I 1589 C 0 s canFam3.chr7 36253657 128 + 80974532 AAAACTATAAGAAGTAT--TATGTTTACTGTAAAATAACACACAAAATATACAAA--AAAGTATAAATAAGACTT-TAAAAACCAACATCACTCGGAAATAGACTATGGAGCAGTCGGGTGTATGTCCTCTGG- i canFam3.chr7 C 0 C 0 a score=409557.000000 s hg38.chr1_KI270759v1_alt 64460 123 + 425601 CATTTCATACACTCGCAATTTGTaaaattgtgaccaggttcaattctgtgacctgcagttcacttaatacattgggtaca-tttccccatgccactatatgtttccctaaaatattatctttag s panTro4.chr1 224812755 123 + 228333871 CATTTCATACACTCACAATTTGTaaaattgtgaccaggttcaattctgtgacctgcagttcacttaatacattgggtaca-tttccccatgccactatatgtttccctaaaatattatctttag i panTro4.chr1 I 2717 C 0 s ponAbe2.chr1 226169926 123 - 229942017 CATTTCATACACTCGCAATTTataaaattgtgaccagattcagtcctgtgccctgcagttcacttaatacattgggtacc-tttccccacgccgttatatatttccctaaaatattatctttag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140059139 123 - 143122389 CATTTCATACACTTGCAATTTGTAAAATTGTGACCAGGTTCAATTCTGTGACCTGCAGCTCACTTAATGCATTGGGTACA-TTTCCCCACGCCGTTATATGTTTCCCTAAAATATTATCTTTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16775373 123 - 229590362 CATTTCATACACTTCCAATTTGTaaaattgtgaccaggttcaattctgtcacctgcgtttcactgaatccattgggtcca-tttccccacgccgttacacgtttccctaaaatattatctttag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223537801 123 - 227556264 catttcatacacttccagtttgtaaaattgtgaccaggttcaattctgtcacctgcgtttcactgaatccattgggtcca-tttccccacgccattacacgtttccctaaaatattatctttag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16587895 123 - 220367699 CATTTCATACACTTCCAATTTGTAAAATTGTGACCAGGTTCAATTCTGTGACCTGCGTTTCACTGAATCCATTGGGTCCA-TTTCCCCATGCTGTTACATGTTTCcctaaaatattatctttag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82387542 123 + 85787240 CATTTCCTATACTTTCAATTTGTAAAATTGTGACCAGGTTcaattctgtgacctgcgtttcactgaatccattgggtgca-tttccccatgctgttacatgtttccctaaaatattatctttag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14065215 106 - 49578535 TATTTCACAC-CTGGCAATTTGTAAAATTGTGAGCAGGTTCAATTTTGTG----------------ATACATTGGATACG-TTTCCCCATGCCCTTATATGTTTTCCTAAAATATTATCTCTAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178682602 108 + 195471971 ---------CATTCACAATTTGTAAACTTGTGAAGAGACCCAGTGCTTTGGCTTCTGCTTTAT------CGCCTGGCGTA-TTTTCCCATGGTGTTATTTATTTTTCTGAAATGCAGTCTTTGG i mm10.chr1 C 0 I 126 s canFam3.chr7 36253785 124 + 80974532 TATTTTATACGAACACAATTTATGAAATTGTGATGAGGTTTAATCCtgtcatctgcttttcgcctaatatactgggtacattttccccatgccattatatatgtttctaaaatatgaccctcaa i canFam3.chr7 C 0 C 0 a score=179844.000000 s hg38.chr1_KI270759v1_alt 64583 63 + 425601 cagtaacatatt---tcattatatgaatattttccacgctatggagatgtcctcatttattaggtt s panTro4.chr1 224812878 63 + 228333871 cagtaggatatt---tcattatatgaatattttccacgctctggagatgtcctaatttattaggtt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226170049 63 - 229942017 cagtagcgtatt---tcattatatgaatatTATCCACGCTCTGGAGATGGCCTAATTTAGTAGGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140059262 63 - 143122389 CAGTAGCATATT---TCATTATATGAATATTATCCACACTCTGGAGATGTCCTAATTTATTAGGTT i nomLeu3.chr5 C 0 I 476 s rheMac3.chr1 16775496 63 - 229590362 cagtagcgtatt---tcattatatgaatattatccacactatggagatgtcctaatttattaggtt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223537924 63 - 227556264 cagtagcgtatt---tcattatatgaatattatccacactatggagatgtcctaatttattaggtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16588018 63 - 220367699 cAGTAgcatatt---tcattatatgaatattatCCACACTATGGAGATGTCCtaatttattaggtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82387665 63 + 85787240 cagaaacgtatt---tcattatatgaatattatccacactatggagatgtcctagtttattaggtt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14065321 54 - 49578535 CAGTAGCATATT---TCATTGTATCAATATCAT-----CTATGGCAATGTCCTAAT----TAGGtt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36253909 60 + 80974532 tggtagcctaatgcaccattatataaatatGATCCATTATAGGAGTATGGCCTAATTTAT------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178682710 126 + 195471971 I a score=5600.000000 s hg38.chr1_KI270759v1_alt 64646 2 + 425601 gg s panTro4.chr1 224812941 2 + 228333871 gg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226170112 2 - 229942017 GG i ponAbe2.chr1 C 0 I 406 s rheMac3.chr1 16775559 2 - 229590362 gg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223537987 2 - 227556264 gg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16588081 2 - 220367699 gg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82387728 2 + 85787240 gg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14065375 2 - 49578535 gg i calJac3.chr19 C 0 C 0 e mm10.chr1 178682710 126 + 195471971 I e canFam3.chr7 36253969 0 + 80974532 C e nomLeu3.chr5 140059325 476 - 143122389 I a score=6738.000000 s hg38.chr1_KI270759v1_alt 64648 4 + 425601 tgca s panTro4.chr1 224812943 4 + 228333871 tgca i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16775561 4 - 229590362 tgca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223537989 4 - 227556264 tgca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16588083 4 - 220367699 tgca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82387730 4 + 85787240 tgca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14065377 4 - 49578535 ttca i calJac3.chr19 C 0 I 448 e mm10.chr1 178682710 126 + 195471971 I e canFam3.chr7 36253969 0 + 80974532 C e nomLeu3.chr5 140059325 476 - 143122389 I e ponAbe2.chr1 226170114 406 - 229942017 I a score=65152.000000 s hg38.chr1_KI270759v1_alt 64652 61 + 425601 aaagtcattgcggtttttgtcattactttcaatggcaaaaaccgcaatgacttttgcaccc s panTro4.chr1 224812947 61 + 228333871 aaagtcattgcggtttttgtcattactttcaatggcaaaaaccgcaatgatttttgcacca i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16775565 54 - 229590362 aaagtcattgcggtttttg-------tttcaacagcaaaaaccgcaatgacttttgcacca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223537993 54 - 227556264 aaagtcattgcggtttttg-------tttcaacagcaaaaaccgcaatgacttttgcacca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16588087 61 - 220367699 aaagtcattgcggTTTCTGTCATTACTTTCAAcagcaaaaaccacaatgacttttgcacca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82387734 54 + 85787240 aaagtcattgcggtttttg-------ttgaaataacaaaaaccgcaatgacttttgcacca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178682710 126 + 195471971 I e canFam3.chr7 36253969 0 + 80974532 C e calJac3.chr19 14065381 448 - 49578535 I e nomLeu3.chr5 140059325 476 - 143122389 I e ponAbe2.chr1 226170114 406 - 229942017 I a score=6876.000000 s hg38.chr1_KI270759v1_alt 64713 2 + 425601 ac s panTro4.chr1 224813008 2 + 228333871 ac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226170520 2 - 229942017 AC i ponAbe2.chr1 I 406 C 0 s nomLeu3.chr5 140059801 2 - 143122389 AC i nomLeu3.chr5 I 476 C 0 s rheMac3.chr1 16775619 2 - 229590362 ac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223538047 2 - 227556264 ac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16588148 2 - 220367699 ac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82387788 2 + 85787240 ac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14065829 2 - 49578535 AC i calJac3.chr19 I 448 C 0 e mm10.chr1 178682710 126 + 195471971 I e canFam3.chr7 36253969 0 + 80974532 C a score=1251343.000000 s hg38.chr1_KI270759v1_alt 64715 391 + 425601 ctaatatata-accaaacatcaattaattagaatttaggtctttgctactataaatacaatgctcaggtgaacatccttttacCCAGGCCATAG---------TTTCAACACATGCCTGGCTTGTGTGAGCCACATACTTGTGTTACACAGACAACTCACATTTCACCTTCCAGGACTCCG-AAGCTCT-TGTCACACG-----TGG------------------------CAGGGGCCGGTTAGAAGACTCGGCGGCTGCGCCAGCGCTGATG-AGCGAGGACAGAGGAGCATGAAACTGGTGCTTTCCTGTAAAATATTCAAAGTGAGGTGAAAGTTTGTGTGT---AAGTCGGAAACAC---------TGAAGATGCTGCTTAAACGGCCGATTA-GGGATTATTTGTGCGTTTCTTT-----TATTTGTGCAATGATTCTGT----TCTTC s panTro4.chr1 224813010 391 + 228333871 ctaatatata-accaaacatcaattaattagaacttaggtctttgctactataaatacaatgctcaggtgaacatccttttacccagaccatag---------tttcaacacatccctgGGTTGTGTGAGCCACATACTCGTGTTACACAGACAACTCACATTTCACCTTCCAGGACTCCG-AAGCTCT-TGTCACATG-----TGG------------------------CAGGGGCCGGTTAGAAGACTCGGCGGCTGCGCCAGCGCTGATG-AGCGAGGACAGAGGAGCATGAAACTGGTGCTTTCCTATAAAATATTCAAAGTGAGGTGAAAGTTTGTGTGT---AAGGCGGAAACAC---------TGAAGATGCTGCTTAAACGGCCAATTA-GGGATTATTTGTGCGTTTCTTT-----TATTTGTGCAATGATTCTGT----TCTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226170522 391 - 229942017 CTAATATATA-ACCAAACGTCAATTAATTAGAATTTAGGTCTTTGCTACTATAAATACAATGCTCAGGTGAACATCCTTTTACCCAGGCCATAG---------TTTCAACACATCCCTGGGTTGTGTGAGCCACATACTCGTGTTACACAGACAACTCACATTTCACCTTCCAGGACTCTG-AAGCTCT-TGTCACATG-----TGG------------------------CAGGGGCCGGTTAGAAGACTCAGCGGCCGCGCCAGCGCTGATG-AGCGAGGACAGATGAGCATGAAACTGGTGCTTTCCTATAAAATATTCAAAGTGAGGTGAAAGTTTGTGTGT---AAGGCGGAAACAC---------CGAAGATGCTGCTTAAACGGCCGATTA-GGGATTATTTGTGCATTTCTTT-----TATTTGTGCAATGATTCTGT----TCCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140059803 392 - 143122389 CTAATATATA-ACCAAACATCAATTAATTAGAATTTAGATCTTTGCTACTATAAATAAAATGCTCAGGTGAACATCCTTTTACCCAGGCCATCG---------TTTCAACACATCCCTGGGTTGTGCGAGCCGCATACTCATGTTACACAGACAACTCACATTTCACCTTCCAGGACTCTTCCGGCTCT-TGTCACGTG-----TGG------------------------CAGGGGCCGGTTAGAAGACTTAGTGGCTGTGCCAGCGCTGATG-AGCAAGGACAGATGGGCATGAAACTGGTGCTTTCCTATAAAATATTCAAAGTGAGGTGAAAGTTTGTGTGG---AAGGCGGAAACAC---------TGACGATGCTGCTTAAACGGCCGATTA-GGGATTATTTGTGCGTTTCTTT-----TATTTCTGCAATGATTCTGT----TCCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16775621 420 - 229590362 ctaatacata-accaaacatcaattaattagaatttaggtctttgctactgtaaataaaatgctcagatgaacatccttttacccaggccatag---------tttccacacatccctgGGTTGTGTGAGCCACATGCTCATGTTACACAGACAACTCACATTTCACCTTCCAGGACCCCG-AAGCTCTGTGTCACACGCACATTGGCTGTGCGGCCATTTCGCTAAGCATCAGGGGCCGGTTAGAAGACTCAGTGACTGCGCCAGGGCTGATG-ATCGAGGACAGATGAGCATGAAACTGGTGC-TTCCTATAAAATATTCAAAGTGAGGTGAAAGTTTGTGTGT---AAGGTGGAAACAC---------TGAAGATGCTGCTTCAACGGCTGGTTA-GGGATTATTTGTGCGTTTCTTT-----TATTTGTGCAATGATTCTTT----TCCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223538049 420 - 227556264 ctaatacata-accaaacatcaattaattagaatttaggtctttgctactgtaaataaaatgctcagatgaacatccttttacccaggccatag---------tttccacacatccctgGGTTGTGTGAGCCACATGCTCATGTTACACAGACAACTCACATTTCACCTTCCAGGACCCCG-AAGCTCTGTATCACACGCACATTGGCTGTGCGGCCATTTCGCTAAGCATCAGGGGCCGGTTAGAAGACTCAGTGACTGCGCCAGGGCTGACG-ATCGAGGACAGATGAGCATGAAACTGGTGC-TTCCTATAAAATATTCAAAGTGAGGTGAAAGTTTGTGTGT---AAGGTGGAAACAC---------TGAAGATGCTGCTTCAACGGCTGGTTA-GGGATTATTTGTGCGTTTCTTT-----TATTTGTGCAATGATTCTTT----TCCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16588150 420 - 220367699 ctaatacata-aCCAAACATCAAATAATTAGAATTTAggtctttgctactgtaaataaaATGCTCAGATGAACATCCTTTTACCCAGGCCATAG---------TTTCCACACATCCCTGGGTTGTGTGAGCCACATGCTCATGTTACACAGACAACTCACATTTCACCTTCCAGGACCCCA-AAGCTCTGTATCACATGCACATTGGCTGTGCGGCCATTTCGCTAAGCATCAGGGGCCAGTTAGAAGACTCAGTGACTGCGCCAGGGCTGACG-ATCGAGGACAGAGGAGCATGAAACTGGTGC-TTcctataaaatattcaaagtgaGGTGAAAGTTTGTGTGT---AAGGTGGAAACAC---------TGAAGATGCTGCTTCAACGGCTGGTTA-GGGATTATTTGTGCGTTTCTTT-----TATTTGTGCAAtgattcttt----tcctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82387790 421 + 85787240 ctaatacata-accaaacatcaattaattagaatttaggtctttgctactgtaaataaaatgctcaggtgaacatccttttacccaggccatcg---------tttccacacatccctgGGTTGTGTGAGCCGCATGCTCATGTTACACAGACAACTCACATTTCACCTTCCAGGACCCCG-AAGCTCTGTGTCACACGCACATTGGCTGTGCGGCCATTTCGCTAAGCATCAGGGGCCGGTTAGAAGACTCAGCGCCTGCGCCAGGGCTGATG-ATCGAGGACAGATGAGCATGAAACTGGTGC-TTCCTATAAAATATTCAAAGTGAGGTGAAAGTTTGTGTGT---AAAGTGGAAACAC---------TGAAGATGCTGCTTCAGCGGCCGGTTAGGGGATTATTTGTGTGTTTCTTT-----TATTTGTGCAATGATTCTTT----TCCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14065831 364 - 49578535 CTAATACATA-CCCAAACACCAATTAATTATAATTCGGGTCTTTGCTACTATAAATAAAATGCTCAGGTAAACATCCTTTTACCCAGGCCATAT---------TTTCAACACATCCCTGGGTTGTGTGAGCCACATCCTCATGTTACACAGACAACTCACATTTCACCTTCCACGACTCCA-GTGCTCT-TGAAGCACG-----TGG------------------------CCGGGGCCGGTCGGAAGACTCAGCTGCTGTACCAG--------------------------ATGGAACTGGTGCTTTCACGGAAAATGTTCAAAGTGCAGTGAGAGTTTGTGT-----AAGGCAGGGACAC---------TGAAGATGCTGCTTAAAAGGCCAATGA-GGCATTATTGGTGTGTTTCTTT-----TCTTTGTGCAATGATTCTAT----TCCTC i calJac3.chr19 C 0 I 313 s mm10.chr1 178682836 359 + 195471971 CTAATGGATCTAACAAGCATCACT--ATTAGAGTCTATGT-TTTGTGAGTATAAATTGCACGGCCAGG-AAACAGCCTT---CCTGGGGGGTGGGGGGAGTGTTTTTACCATGTCTCTGA-TAGTGCTAGC----------TGTTACACAGGCAAGTCCCATCTTACCTTCC---ACACTG-GAAGCCA---------------TGA---------------------------GAGCCGTAT---AGACTCAACTGCTGTTCCATTACTGATGTCACAAGGACAATGGGTTAGG--ACCACAGCTGTAATAGAAAATACCCA----GGGATGGAGATGGGTGAG---------AGGGACAA---------TCTACAAGATGCCTAAAAGGAAGTGTG-GCTGTTACGGGTGTGTTCCTTTTGTAATATATTCACAATAATTCTCA----CTTTC i mm10.chr1 I 126 C 0 s canFam3.chr7 36253969 397 + 80974532 -------ATA-ACCAAGCACCAATT-ACTAGAGTTTAGGTTTTCACTACTATAAATAAAATGCTCCAGTGCACATTCTTCTACCCGGGTCGCAT---------TTTCAACACAT-CCTGGGTTGTGCGAGCCACATACTCATGTTACACAGACAACTCATGTTTCGCCTTCCTGGGCCCCA-AAGCACT-TGTAACATA-----TAT------------------------CAGGTGCTAGTTGGACGACTCAGCTGCTATA-CAGCACTAATG-AGCAGGGACAGAAGGACTTGGAACTGGTGTTTTTGTATAGAATAGTCGAAGTGTTAGCAAAGTTTGTTTGGGCAAGGGGGGTGGCATGGAGTGTGGGGAAGGTGCTGCTTAAGAGCAATTTGA-AGGATGATGGGTGCATCTCTTT-----TTTTTGTGTTGTGATTCTTTCTGCTCTTC i canFam3.chr7 C 0 C 0 a score=3018988.000000 s hg38.chr1_KI270759v1_alt 65106 813 + 425601 CTCTTACTTCCCAAACTCAGATGAAAGAGAatttactgt------acaagtat-----ttattaatctctaa---------ccaagtaccaggcactgtgctaggtggtgggtggggccgcagccttgggctggaaaccctggttcctgtcctgaggtccttgcagtgggacaga--------------------aggcagg---------------------------tgaGTGCAGAGGTG--AAGAGATGCCGCGG-TGCTTTGGGGGCATGCAG--ACAGGCTCCTAATCCCGCCC-----------------GATGTGG--CAAAGCCAGATACAACCAAGATTCACACAAGCCACCAACTTGTGGTCATCCTGGGTATGTTCTGTTGCTTCTTTCCAACTCCAGAACAGACCAATTCATGCATTTCCC---------------CTCAGTAA----TGAAGGGACCAGAGGAAATCTCTCTGGGATAAAGAGATTTGGTGCCTGGC----------TATGAATCTGCGTCCCCTGTGTTGTGACTGTGTCGTCCTGATGCCCTGGGGTGGGGGCTCTGGGTCTGGCCAGACTGAGTGTCTCCTGTTGCGGACATCTCCCTGCAGTACATATTGTACAGTTCGCAGTCTAGCCAGCTCGTCAGAGACGGTTGACTGCTCTGAAAGCTGACCTCA-TTTTTCCTGCTTACCC--ATACTCCCAC-TTCCCTCCCCACAGAGCAGATGG-CCTCTGGATCAGTGCCAGAGCCA-TTCCCCGGGCAGAG-AAGCATCT-------AGACCTT-GTCACTACCAAGGGTGCGGCTCCACACCCGCGGGACCCGAGCCTCTAGAAATGAGGGA-GAAGACGACTCTGCCTTTCTGCAATTTAGACGTCGCAAGGATGAAAACGATGCGGACAGGCTTTCCAGCAGTGAGC s panTro4.chr1 224813401 813 + 228333871 CTCTTACTTCCCAAACTCAGATGAAAGAGAATTTGCTGT------acaagtat-----ttattaatctctaa---------ccaagtaccaggcactgtgctaggtggtgggtggggctgcagccttgggctggaaaccctggttcctgtcctgaggtccttgcagtgggacaga--------------------aggcagg---------------------------tgagtgcagaGGTG--AAGAGATGTTGCGG-TGCTTTGGGGGCATGCAG--ACAGGCTCCTAATCCCGCCC-----------------GATGTGG--CAAAGCCAGATACAACCAAGATTCACACAAGCCACCAACTTGTGGTCATCCTGGGTATGTTCTGTTGCTTCTTTCCAACTCCAGAACAGACCAATTCATGCATTTCCC---------------CTCAGTAA----TAAAGGGACCAGAGGAAATCTCTCTGGGATAAAGAGATTTGGTGCCTGGC----------TATGAATCTGCGTCCCCTGTGTTGTGACTGTGTCGTCCTGATGCCCTGGGGTGGGGGCTCTGGGTCTGGCCAGACTGAGTGTCTCCTGTTGCGGACATCTCCCTGCAGTAAATATTGTACAGTTCGCAGTCTAGCCAGCTCGTCAGAGACGGTTGACTGCTCTGAAAGCTGACCTCA-TTTTTCCTGCTTACCC--ATACTCCCAC-TTCCCTCCCCACAGAGCAGATGG-CCTCTGGATCAGTGCCAGAGCCA-TTCCCCGGGCAGGG-AAGCATCT-------AGACCTT-GTCACTACCAAGGGTGCGGCTCCACACCCGCGGGACCTGAGCCTCTAGAAATGAGGGA-GAAGACGACTCTGCCTTTCTGCAATTTCGATGTAGCAAGGATGAAAACGATGCGGACAGGCTTTCCAGCAGTGAGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226170913 815 - 229942017 CTCTTTCTTCCCAAACTCAGATGAAAGAGAATTTGCTGT------acaagtat-----gtattaatctctaa---------ccaagtaccaggcactgtgctaggtggtgggtggggctgcagcctcgggctggaaaccctggttcctgtcctgaggtcctcgcagtGGGACAGA--------------------AGGCAGG---------------------------TGAGTGCAGAGATG--AAGAGATGCCCCAC-TGCTCTGGGGGCGTGCAG--ACAGGCTCCTAATCCCGCCT-----------------GATGTGG--CAAAGCCAGATACAACCAAGATTCACACAAGCCACCAACTTGTGGTCATCCTGGGTATGTTATGTTGCTTCTTTCCAACGCCAGAACAGACCAATTCATGCATTTCCC---------------CTGAGTAA----TAAAGGGACCAGAGGAAATCTCTCCGAGATAAAGAGATTTGGGGCCTGGC----------TATGAATCCGCGTCCCCTGTGTTGTGACTGTGTCGTCCTGATGCCCTGGGGTGGGGGCTCTGGGTCTGGCCAGACTGAGTGTCTCCTGTTGCGGACATCTCCCTGCAGTAAATATTGTACAGTTCGCAGTCTAGCCAGCTCGTCAGAGATGGTTGACTGCTCTGAAAGCTGACCTCA-TTTTTCCTGCTCACCCATATACTCCCAC-TTCCCTCTCCACAAAGCAGATGG-CCTCTGGATCAGTGCCAGAGCTG-TTCCCCGGGCAGAG-AAGCATCT-------AGAGCTT-GTCACTACCAAGGGTGCAGCTCCACACCCGTGGAACCCGAGCCTCTAGAAATGAGGGA-GAAGATGACTCTGCCCTTCTGCAATTTAGATGTAGCAAGGATGAAAACGATGCGGACAGGCCTTCCAGCAGTGAGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140060195 816 - 143122389 CTCTTTCTTCCCAAACTCAGATGAAAGAGAATTTGCTGT------acaagtat-----ttattaatctctaa---------ccaagtactaggcactgtgctaggtggtgggtggggctgcagccttgggctggaaaccctggctcctgtcctgaggtcctcgcagtgggacaga--------------------aggcagg---------------------------tgagtgcagaGGTG--AAGAGATGCCCCGC-TGCTTTGGGGGCATGCAG--ACAGGCTCCTAATCCCGCCC-----------------AATGTGG--CAAAGCTGGATACAACCAAGATTCGCACAAGCCACCAACTTGTGGCCGTCCTGGGTATGTTATGTTGCTTCTTTCCAACTCCAGAACAGACCAATTCGTGCATTTCCC---------------CTGAGTAA----TAGAGGGACCAGAGGAAATCTCTCCGGGATAAAGAGATTTGGTGCCTGGC----------TATGAATCCGCGTCCCCTGTGTTGTGACTGTGTCATCCTGATGCCCTGGGGTGGGGGCTCTGGGTCTGGCCAGACTGAGTGTCTCCTGTTGCGGACATCTGCCTGCAGTAAATATTGTACCGTTCGCAGTCTAGCCAGCTCGTCAGAGATGGTTGACTGCTCTGAAAGCTGACCTCATTTTTTCCTGCTCACCC--ACACTCCCACTTTCCCTCCCCACAAAGCAGATGG-CCTCTGGATCAGTGCCAGAGCCG-TTCCCCGGGCAGAGAAAGCATCT-------AGACCTT-GTCACTACCAAGGGTGCGGCTCCACACCCGCAGAACCCGAGCCTCTAGACATGAGGGA-GAAGACGACTCTGCCCTTCTGCAATTTAGACGTAGCAAGGATGACAACGATGTGGACAGGCCTTCCAGCAGTGAGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16776041 793 - 229590362 GTCTTTCTTCCCAAACTCAGATGAAAGAGAattcgctgt------acaagtat-----ttattcatctctaa---------ccaagtaccaggcactgtgctaggtggtgggtggggctgcagccgtgggctggaaaccctgattcccgtcctaaggtcctcaccgtgggacaga--------------------aggcagg---------------------------tgagtgcagaGGTG--AAGAGATGCCCCAC-TGCTTTGGGGGCATGCAG--ACAGGCTCCTAATCCTGCCC-----------------AATGTGG--CACAACCAGATACAACCAAGATTCACACGAGCCGCCAGCTTGTGGTCGTCCTGGGTACGTTATGTTGCTTCTTTCCAACTTGAGAACAGACCGATTCACGCATTTCCC---------------CTGAGTAA----TAAAGGGACCAGAGGAAATCTCTCTGGGATCAAGAGATTTGGTGCCTGGC----------TATGAATCCGCGTCCCCTGTGTTGTGACTGTGTCGTCCTGACGCCCCGGGGTGGGGGCTCTGGGTCTGGCCAGACTGAGTGTCTCCTGTTGCGGACATCTCCCTGCAGTAAATATTGTGCAGTTCGCAGTCTAGCCAGCTCGTCAGAGATGGTTGACTGCTCTGAAAGCTGACCTCA-TTTTTCCTGCTCACCC--GTACTCCCAC-TTCCCTCCCCACAAAGCAGATGG-CCTCTGGATCAGTGCCAGAGCCG-TTCCCTGGGCAGAG-AAGCATCT-------AGACCTT-GTCACTACCACAGGCGCAACTCCACACCCGCAGAACCCGAGCCTCTAGAAA------------ATGACTCTTCCCTCCTGCAATTTAGATGTAGCGAGGAT---------GCGGACAGGCCTTCCAGCAGTGAGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223538469 793 - 227556264 GTCTTTCTTCCCAAACTCAGATGAAAGAGAattcgctgt------acaagtat-----ttattcatctctaa---------ccaagtaccaggcactgtgctaggtggtgggtggggctgcagccgtgggctggaaaccctgattcccgtcctaaggtcctcaccgtgggacaga--------------------aggcagg---------------------------tgagtgcagaGGTG--AAGAGATGCCCCAC-TGCTTTGGGGGCATGCAG--ACAGGCTCCTAATCCTGCCC-----------------AATGTGG--CACAACCAGATACAACCAAGATTCACACGAGCCGCCAGCTTGTGGTCGTCCTGGGTACGTTATGTTGCTTCTTTCCAACTTGAGAACAGACCAATTCACGCATTTCCC---------------CTGAGTAA----TAAAGGGACCAGAGGAAATCTCTCTGGGATCAAGAGATTTGGTGCCTGGC----------TATGAATCCGCGTCCCCTGTGTTGTGACTGTGTCGTCCTGACGCCCCGGGGTGGGGGCTCTGGGTCTGGCCAGACTGAGTGTCTCCTGTTGCGGACATCTCCCTGCAGTAAATATTGTGCAGTTCGCAGTCTAGCCAGCTCGTCAGAGATGGTTGACTGCTCTGAAAGCTGACCTCA-TTTTTCCTGCTCACCC--GTACTCCCAC-TTTCCTCCCCACAAAGCAGATGG-CCTCTGGATCAGTGCCAGAGCCG-TTCCCTGGGCAGAG-AAGCATCT-------AGACCTT-GTCACTACCACAGGCGCAACTCCACACCCGCAGAACCCGAGCCTCTAGAAA------------ATGACTCTTCCCTCCTGCAATTTAGATGTAGCGAGGAT---------GCGGACAGGCCTTCCAGCAGTGAGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16588570 793 - 220367699 ctctttcttcccaaACTCAGATGAAAGAGAATTTGCTGT------ACAAGTAT-----TTATTCATCTCTAA---------CcaagtaccaggcactgtgctaggtggtGGGTGGGGCTGCAACCGTGGGCTGGAAACCCTGATTCCTGTCCTAAGGTCCTCACCGTGGGACAGA--------------------AGGCAGG---------------------------TGAGTGCAGAGGTG--AAGAGATGCCCCGC-TGCTTTGGGGGCATGCAG--ACAGGGTCCTAATCCTGCCC-----------------GATGTGG--CAAAACCAGATACAACCAAAATTCACACGAGCCACCAGCTTGTGGTCGTCCTGGGTACGTTATGTTGCTTCTTTCCAACTCGAGAACAGACCAGTTCACGCATTTCCC---------------CTGAGTAA----TAAAGGGACCAGAGGAAATCTCTCTGGGATCAAGAGATTTGGTGCCTGGC----------TATGAATCCGCGTCCCCTGTGTTGTGACTGTGTCGTCCTGACGCCCCGGGGTGGGGGCTCTGGGTCTGGCCAGACTGAGTGTCTCCTGTTGCGGACATCTCCCTGCAGTAAATATTGTGCAGTTCGCAGTCTAGCCAGCTCGTCAGAGATGGTTGACTGCCCTGAAAGCTGACCTCA-TTTTTCCTGCTCACCC--GTACTCCCAC-TTTCCTCCCCACAAAGCAGATGG-CCTCTGGATCAGTGCCAGAGCCA-TTCCCTGGGCAGAG-AAGCATCT-------AGACCTT-GTCACTACCACAGGCGCAACTCCACACCCGCAGAACCCGAGCCTCTAGAAA------------ATGACTCTTCCCTCCTGCAATTTAGATGTAGCAAGGAT---------GCGGACAGGCCTTCCAGCAGTAAGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82388211 802 + 85787240 CTCTTTCTTCCCAAACTCAGATGAAAGAGAATTTGCTGT------acaagtat-----ttattaatctctaa---------ccaagtaccaggcactgtgctaggtggtgggtggggctgcagccttgggctggaaaccctggttcctgtcctaaggtcctcaccgtGGGACAGA--------------------AGGCAGG---------------------------TGAGTGTAGAGGTG--AAGAGATGCCCCGC-TGCTTTGGGGGCATGCAG--ACAGGCTCCTAATCCTGCCT-----------------GATGTGG--CAAAACCAGATACAACCAAGATTCACACGAGCCACCAGCTTGTGGTCGTCCTGGGTACGTTACGTTGCTTCTTTCCAACTCGAGAACAGACCAATTCATGCATTTCCC---------------CTGAGTAA----TAAAAGGACCAGAGGAAATCTCTCTGGGATCAAGAGATTTGGTGCCTGGC----------TGTGAATCCGCGTCCCCTGTGTTGTGACTGTGTCGTCCTGACGCCCCGGGGTGGGGGCTCTGGGTCTGGCCAGACTGAGTGTCTCCTGTTGCGGACATCTCCCTGCAGTAAATACTGTGCAGTTCGCAGTCTAGCCAGCTTGTCAGAGATGGTTGACTGCTCTGAAAGCTGACCTCA-TTTTTCCTGCTCACCC--GTACTCCCAC-TTTCCTCCCCACAAAGCAGATGG-CCTCTGGATCAGTGCCAGAGCCG-TTCCCCGGGCAGAG-AAGCATCT-------AGACCTT-GTCACCACCGCAGGCGCAACTCCATACCTACAGAACCCGAGCCTCTAGAAA------------ATGACTCTTCCCTTCTGCAATTTAGATGTAGCAAGGATGAAGACGACGCGGACAGGCCTTCCAGCAGTGAGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14066508 811 - 49578535 CTCTTTCTTCCCAACCTCAGATGAAAGAGAATTTGCTGT------ACAAGTG---------------TCTAG---------CCAAGTGCCAGGCACTGCGCTAGGTGGCAGGTGGGGCTGCAGCCTCGGGCTGGAAATCCTGGTTCCTGTCCTGAGGTCCTCACGGTGGGGGAGG--------------------AGCCAGG---------------------------TGAGTGCAGAGGTG--AAGAGATGCC-CAC-TGCTTTGGGAGCATGCAG--ACAGACTCATAATCCAGCCT-----------------GCTGTGG--CAAAGCCAGATA-AACCAAGATTCACACAAGCCGCCAACTTGCAGTCATCCTGGGTACATTATATTTCTTCTTTCTAACTCCAGAACAGACCAATTCATGCATTTCCC---------------CTGAGTAA----TAAAGGGACCAGAGGAAACCTCTGTGCGATAAAGGGATTTGGTGCCTGGCTATGAATCAGTATGAATCCACGTCCCCTGTTTTGTGACTGTGTCGTCCCAATGCCCTGGGGTGGGGGCTCTGGGTCTGGCCAGACTGAGTGTCTCCTGTCGCAGACATCTCCCTGCAGTAAATATTCTGCAGTTCGCAGTCTAGCCAGCTCGTCAGAGATGGTTGACTGCTCTGAGAGCTGACCTCA-TTTTTCCTGCTCACCC--ATACTCCCAC-TTCCCTCGCCACAGAGTAGATGG-CCTCTGGATCAGTGCCAGAGCTGTTTTCCCGGGCAGAG-AAGCATCT-------AGACTTT-GTCACTACCAAGGGTGTGGCTCCACACCCATAGAACCCGAGCCTCTAGAAATGAGAGA-GAAGACAACTCTGCCCTTCTACAATTTAGATGTAGCCAGGAT-GAAACGACACAGACAGGCTTTCCAACATAGAGC i calJac3.chr19 I 313 C 0 s mm10.chr1 178683195 855 + 195471971 ----TTCTGCCCCATCTCAGATGAAAGAGAATTGCCTGC------ACAAGAACCAGTATTATTATTTTTTAAAGCCCTTTGTCATAGAGTAGGCACCGTGCTATTTGTTGGGTGTGGCTGCCTCCTTAGGCTAAAAACCCGTGTTCCTGTCCTGTGGTCTTCACAGTGAGGGAGA--------------------AGCCAGGCATGTTACACATGATGAGGTTGGCAGCTAAGTGCAAAAGTG--GAGTGGTGCTTGTC-CACTCTGAGACTTTGGAGGAACTGG-----AATCCAGCTCTT---------------GTTGTAGCTCAAAATCAGATTCAAAGATGACAGGGACAAATTTCCATCTTGGAATTGTCCGGGATACATTTTATTG-------GCAATGTCAGAGCTGACCGACTCATGTGCCACCCACCCCCCACCCCCCGCCAAGTAATGATTAAAGGGACCGGAGGAAATCTCTCTGGGATAAAGAGATTTGGGGTCTGGC----------TATGAATCAGTATCCCACGTGTTGTGACTATATCGCCCAGATGCCCTGAGGCGTGGGCTCTGGGTCTGG-CAGACTGAGTGTCTCCTGTTGTGAACATCTCCCTGCAGTAAATATTCTGTAGTCCGCAGTCTAGCCAGCTCGTCAGAGATGGTTGACTGCTCTGGAAGCCAGCTGTA-GTTCCCCTACTCACCC--ACACTCCCAC-TTCCCTCT--GTGGAGCAGATTT-CCTCGGGCCCAGAGCCAGAG-TG-TTCCTTGAGCAGGG-AAGCAGCT-------CGAGTTTAATGAGTGTTGAGGGTACGGTTCCACTCCCG-GGAACCTGAGCCGGTGGAGATGTTATA-TAA-AGAA--CTGTCCTTCTGAACCTCAGATGCAGTAAGGGTGATGAAGAAGAGACCAGGC-TTCCAACAGGGAGC i mm10.chr1 C 0 C 0 s canFam3.chr7 36254366 844 + 80974532 ----------CTCGTCTTTGATGAGA-AGAAGGTCCTGTACAATaacaaatgt-----ttaggaagctctaa---------ccaagtgccagacactctgctgggtggccg--gggCCTCCTGCCTTGGGCTGGAGAGGCAGCTTCAGGTCCTGTGGCCCCGGGGATGAGGCAGGTGAACCACTCAGTATCAGCCAGTGAGG---------------------------TGAATGCAGAGGTGGTGAGAGATGCCCAGCTTGCTCTGAGAGCACACAG--AAGGGCTTTCAGTCCAGCCTCTGGGCAAGCGGGGGTGGATGTGG------------TCTAAAGATGATTCACCCAAGCCACGGACTTGAGATTTTCCTGGGTAAATTTGATTCCTCCTCTCCAGCTCCAGAACAGACTAATTCATGCCTTTCCCC--------------CTGATTGA----TAAAGGGATCAAAGGGAATATGTCTGGGATAAAGAGATTTGGTGCCCGGC----------TGTGGATCAGCATCCC-TGTGTTGTGACTGTGTCATCCTGATGCCCTGGGCTGGGTGATCTGGGTCTGGCCAGACTGAATGTCTCCCGTTATGGACATCTCCCTGCAATAAATATTCCGCAGCTCACAGTCTAGCCAGCTCAGCAGAGATGGTTGATTGCACTGAAAGCTGACCTCA-CTTTTGCTGCCCACCC--ACACTTCTAC-TTTTCTCCTCACCAAGCAGATAGTCCTTTGGACTAGTGCCAGAGCTG-TTCCCTGGGCAGAG-AAGCATCTAGGATCCAGGCTTT-GTTGCTGCTGGGAGTTCTGCTCCACACCCAAAGACCTGGGGCCTGCGGAAACAAGGCAGGAAGAGGACGCTGTCCTTCTACCATTTCAGCGCAGGGAGGATGACAGAGATGAGGACAGGCTTTCCAACACTGAC- i canFam3.chr7 C 0 C 0 a score=156520.000000 s hg38.chr1_KI270759v1_alt 65919 59 + 425601 CTGGGGAAATCTGCGTCACATGGGCGACAGAA-GGTCCCTCGAATCCCTCAATCCCCGTG s panTro4.chr1 224814214 60 + 228333871 CTGGTGAAATCTGCGTCACGTGGGTGATAGAAAGGTCCCTTGAATCCCTCAATCCCTGTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226171728 60 - 229942017 CTGGTGAAATCTGCATCACATGGGTGATAGAAAGGTCCCTCGAATCCCTCAATCCCTGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061011 58 - 143122389 CTGGTGAAACCTGCGTCTCGTGGGTGATAAA--GGTCCCTCGAATCCCGTAATCCCTGTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16776834 60 - 229590362 CTGGTGGGACCCACGTCACGCGGGTGATAGAATGGTCCCGCGAATCCCTCAATCCCTGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223539262 60 - 227556264 CTGGTGGGACCCGCGTCACGCGGGTGATAGAATGGTCCCGCGAATCCCTCAATCCCTGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16589363 60 - 220367699 CTGGTGGAACCCGCGTCACGCGGGTGATAGAATGGTCCCGCGAATCCCTCAATCCCTGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82389013 60 + 85787240 CTGGTGGAACCCGCGTCACGCGGGTGATGGAATGGTCCCTCGAATCCCTCAATCCCTGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14067319 51 - 49578535 CTGGTGAAGCCTGCGTCACATGGGTGATAGAGCGG---------TCCCTCACTTCCTCTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36255210 57 + 80974532 AGGATCAAACCT---TCACAGAGGTCAGACAGAGGTCCCTCATATTCCTCAAGCCCTCTG i canFam3.chr7 C 0 I 35 e mm10.chr1 178684050 0 + 195471971 C a score=176027.000000 s hg38.chr1_KI270759v1_alt 65978 62 + 425601 GCCCGCACCACTGTGTAATAATCTCCAAAGGTTGCAGTAGGAAGAT---------TCTTGATTCTCGTTTG s panTro4.chr1 224814274 62 + 228333871 ACCCACACCACTGTGTAATAATCTCCAAAGGTTGCAGTAGGAAGAT---------TCTTGATTCTCGTTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226171788 62 - 229942017 ACCCACACCGCTGTGTAATAATCTCCAAAGGCTGCAGTAGGAAGAT---------TCTTGATTGTCTTTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061069 71 - 143122389 ACCCACACCACTGTGTAATAATCTCTAAAGATTGCAGTAGGAAGATTCTTGATTCTCTTGATTCTCTTTTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16776894 62 - 229590362 ACCCACACCACTGTGTCATAATCTCCAAAGGCTGTGGTAGGAAGAT---------TCTCGATTCTCTTTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223539322 62 - 227556264 ACCCACACCACTGTGTCATAATCTCCAAAGGCTGTGGTAGGAAGAT---------TCTCGATTTTCTTTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16589423 62 - 220367699 ACCCACACCACTGTGTCATAATCTCCAAAGGCTGTGGTAGGAAGAT---------TCTCGATTCTCTTTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82389073 62 + 85787240 ACCCACACCACTGTGTCATAATCTCCAAAGGTTGTGGTAGGAAGAT---------TCTCGATTCTCTTTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14067370 62 - 49578535 ACCCACAGCACTGTGTAATCATCTCCGAAGGCTGCAGTAGGAAGAT---------TCTTGATTCTCTTCTG i calJac3.chr19 C 0 C 0 e mm10.chr1 178684050 0 + 195471971 C e canFam3.chr7 36255267 35 + 80974532 I a score=622342.000000 s hg38.chr1_KI270759v1_alt 66040 203 + 425601 CTATATCCTTCACATTTCTAAAGTACCTCCAGAAAGACCAGGAACCTGTAAGCATCACAGATAAATAGGAATCGATCCAGAGAGATTTTAAAAAGAGTAATTTAGGAAGTACTAAGATGACATCAAAAATGTTGAACAAACCACAAAGATAA-TTCTCATTAAATATCTTAGAAAATTGATTTAATAGGAGATTATAAGACGGG s panTro4.chr1 224814336 203 + 228333871 CTATATCCTTCATGTTTCTAAAGTACCTCCAGAAAGACCAGGAACCTGTAAGCATCTCAGATAAATAGGAATCGATCCAGAGAGATTTTAAAAAGAGTAATTTAGGAAGTACTGAGATGACATCAAAAATGTTGAACAAACCACAAAGATAA-TTCTCATTAAATATCTTAGAAAATTGATTTAATAGGAGATTATAAGATGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226171850 202 - 229942017 CTATATCCTTCACATTTCTAAAGTACCTCCAGAAAGACCAGGAACCTGTAAGCATCACAGATAAATAGGAATCGATCCAGAGAGATTTTAAAAAGAGTAATTTAGGAAATACTGAGATGACACC-AAAATGTTGAACAAACCACAAAGATAA-TTCTCATTAAATATCTTGGAAAATTGATTTAATAGGAGATTATAAGACGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061140 203 - 143122389 CTATATCCTTCACATTTCTAAAGCACCTCCAGAAAGACCAGGAACCTGTAAGCATCACAGATAAACAGGAATCGATCCAGAGAGATTTTTAAAAGAGTAATTTAGGAAGTACTGAGATGACATCAAAAATGTTGAACAAACCACAAAGATAA-TTCTCATTAAATATCTTAGAAAATTGATTTAATAGGAGATTATAAGATGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16776956 202 - 229590362 ATATATCCTTCACATTTCTAAAGTACCTCCAGAAAGCCCAGGAACCTGTAAGCAACACAGATAAATAGGAATCGATCCAGAGAGATTTT-AAAAGAGTCATTTAGGAAGTACTGAGATGACATCAAAAACGTTGAACAAACCACAAAGATAA-ATCTTATTAAATACCTTAGAAATTTGATTTAATAGAAGATTATAAGATGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223539384 203 - 227556264 ATATATCCTTCACATTTCTAAAGTACCTCCAGAAAGCCCAGGAACCTGTAAGCAACACAGATAAATAGGAATCGATCCAGAGAGATTTTAAAAAGAGTCATTTAGGAAGTACTGAGATGACATCAAAAACGTTGAACAAACCACAAAGATAA-ATCTTATTAAATACCTTAGAAATTTGATTTAATAGAAGATTATAAGATGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16589485 203 - 220367699 ATATATCCTTCACCTTTCTAAAGTACCTCCAGAAAGACCAGGAACCTGTAAGCATCACAGATAAATAGGAATCGATccagagagattttaaaaagagtcGTTTAGGAAGTACTGAGATGACATCAAAAACGTCGAACAAACCACAAAGATAA-TTCTCATTAAATACCTTAGAAATTTGATTTAATAGAAGATTATAAGATGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82389135 203 + 85787240 ATATATCCTTCACATTTCTAAAGTACGTCCAGAAAGACCAGGAACCTGTAAGCATCACAGATAAATAGGAATCGATCCAGAGAGATTTTAAAAAGAGTCATTTAGGAAGTACTGAGATGACATCAAAAACGTTGAACAAACCACAAAGATAA-TTCTCATTAAATATCTTAGAAATTTGATTTAATAGAAGATTATAAGATGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14067432 200 - 49578535 CTGTATCCTTCACGTTTCTAAAGTGCCTCCAGAAAGACCAGGAACCTGTAAGCATCACAGATAAATAGAAATCAATCCAGAGAGATTTTTAAAAGAGCAATTTAGGAAGTACTGAGCTTACATCGAAAATGCAGCACAAACCACAGAGATAA-TGCTCATTAAATATCTTAGAAAATTGATGTAGTAGAAG---ATAAGATGAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178684050 148 + 195471971 CTATATCC------TTTGTGAAGTGCCT-----------------------GCCTCACAAGAGGAAAGGG--------GGGGGGG-----AGGAGAATAATTTAGGAGGCAGTGAG----------AAATG----ATAAATCACAAAGGCAACTTCTTGCGAAATATCTTTGAGAATTCATTTCAGAGGCAACCATGAGGTGAG i mm10.chr1 C 0 C 0 e canFam3.chr7 36255267 35 + 80974532 I a score=204569.000000 s hg38.chr1_KI270759v1_alt 66243 67 + 425601 C--TTTCAAAGAAAGACTTTCTTCTGTTCA---TCTG--CAGACATTTAGCACAATCTATACACACACAGAGAA s panTro4.chr1 224814539 67 + 228333871 C--TTTCAAAGAAAGACTTTCTTCTGTTCA---TCTG--CAGACATTTAGCACAATGTATACACACACAGAGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172052 67 - 229942017 C--TTTCAAAGAAAGACTTTCGTCTGTTCA---TCTG--CAGACATTTAGCATAATCTATACACACACAGAGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061343 67 - 143122389 C--TTTCAAAGAAAGACTTTCTTCTGTTCA---TCTG--CAGACATTTAGTATAATCTATACACACACAGAGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16777158 65 - 229590362 C--TTTCAAAGAAAGACTTTCTTCTGTTCA---TCTG--CAGACATCTACCATAATCTAT--ACACACAGAGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223539587 65 - 227556264 C--TTTCAAAGAAAGACTTTCTTCTGTTCA---TCTG--CAGACATCTACCATAATCTAT--ACACACAGAGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16589688 65 - 220367699 C--TTTCAAAGAAAGACTTTCTTCTGTTCA---TTTG--CAGACATCTAGCATAATCCAT--ACacacagagaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82389338 65 + 85787240 C--TTTCAAAGAAAGACTTTCTTCTGTTCA---TCTG--CAGACATTTAGCATAATCTAT--ACACACAGAGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14067632 64 - 49578535 C--TTTCAGAGAAAGACTT---TTTGTTAA---TCTG--CAGACATTTATCATAATCTGTGCATACTTAGAGAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178684198 74 + 195471971 CCGTTTCACAGCCGGACTTTCTTCTATTGACGTCCTGACCTGACACTCTGTGTAATGTAAATACGCACAAATAA i mm10.chr1 C 0 I 18 s canFam3.chr7 36255302 53 + 80974532 C--TTTCACAGAAGGG-----------------CTTG--TGGACAGTTAACACAATCCATATACATATGTGGGA i canFam3.chr7 I 35 C 0 a score=31950.000000 s hg38.chr1_KI270759v1_alt 66310 8 + 425601 AGCAGAAA s panTro4.chr1 224814606 8 + 228333871 AGCAGAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172119 8 - 229942017 AGCAGAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061410 8 - 143122389 AGCAGAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16777223 8 - 229590362 AGCAGAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223539652 8 - 227556264 AGCAGAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16589753 8 - 220367699 agcagaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82389403 8 + 85787240 AGCAGAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14067696 8 - 49578535 AGCAGAAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36255355 8 + 80974532 AGGAGAAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178684272 18 + 195471971 I a score=86371.000000 s hg38.chr1_KI270759v1_alt 66318 29 + 425601 ATTCTCT-AGCGcaggggtccccagacccc s panTro4.chr1 224814614 29 + 228333871 ATTCTCT-AGCGcaggggtccccagacccc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172127 29 - 229942017 ATTCTCT-AGCAcaggggtccccagacccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061418 29 - 143122389 ATTCTCT-GGCAcaggggtccccagacccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16777231 29 - 229590362 ATTCTCT-AGCAcaggggtccacagacccc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223539660 29 - 227556264 ATTCTCT-AGCAcaggggtccgcagacccc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16589761 29 - 220367699 attctCT-AGCACAGGGGTCCGCAGACCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82389411 29 + 85787240 ATTCTCT-AGCAcaggggtccgcagacccc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14067704 30 - 49578535 ATTCTCTAAGAACAGCGGTCCCCAGACCCC i calJac3.chr19 C 0 I 9 e mm10.chr1 178684272 18 + 195471971 I e canFam3.chr7 36255363 0 + 80974532 C a score=407010.000000 s hg38.chr1_KI270759v1_alt 66347 184 + 425601 aggccacagattgataccactctgtggcctgttaaggagccagccgcagagcaggaggtgactggcgggtgggtgggcattacctcctgagctccatcccctgtcagagcagcagtgccattaggttctcctaggagcagaaaccctactgtgaactgtgcatgtgagggatctaggttgcatg s panTro4.chr1 224814643 152 + 228333871 aggccacagattgataccactctgtggtat--------------cacagag------------------tgggtgggcattacctcctgagctccatcccctgtcagagcagcagtgccattaggttctcctaggagcagaaaccctactgtgaactgggcatgtgagggatctaggttgcatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172156 184 - 229942017 aggccacagattgataccactctgtgccctgttaaggagccagccgcagagcaggaggtgagtggcgggtgggtgggcattacctcctgagctccatcccctgtcagagcagcagtgccattaggttctcctaggagcggaaaccctactgtgaactgcgcacgtgagggatctaggttgcatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061447 184 - 143122389 aggccacagactgataccactctgtggcctgttaagagccgggccacagagcaggcggtgggtggcgggtgggtgggcattacctcctgagctccaacccctgtcagagcagcagtgccatgaggttctcctaggagcagaaaccctactgtgaactgtgcctgtgagggatctaggctgcacg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16777260 184 - 229590362 aggccacagattgatatgactctgtggcctgttaaggagccagctgcagagcaggaggtgagtggcggatgggtgggcattacctcctgagctccatcccctgtcagagcagcagtgccatcaggttcttccaggagcagaaaccgtattgtgaactgtgcacgtgagggatctagggtgcacg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223539689 184 - 227556264 aggccacagattgatatgactctgtggcctgttaaggagccagctgcagagcaggaggtgagtggcggatgggtgggcattacctcctgagctccatcccctgtcagagcagcagtgccatcaggttcttctaggagcggaaaccgtattgtgaactgtgcacgtgagggatctagggtgcacg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16589790 184 - 220367699 AGGCCACAGATTGATATGACTCTGTGGCCTGTTAAGGAGCCAGCCGCAGACCAGGAGGTGAGTGGCGGATGGGTGGGcattacctcctgagctccaTCCCCTGTCAGAGCAGCAGTGCCGTCAGGTTCTCCTAGGAGCAGAAggcctattgtgaactgtgcacgtGAGGGATCTAGGGTGCACG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82389440 184 + 85787240 aggccacagattggtatgactctgtggcctgttaaggagccagccgcagagcaggaggtgagtggcggatgggtgggcattacctcctgagctccatcccctgtcagagcagcagtgccgtcaggttctcctaggagcggaaaccctactgtgaactgtgcacgtgagggatctagggtgcacg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178684272 18 + 195471971 I e canFam3.chr7 36255363 0 + 80974532 C e calJac3.chr19 14067734 9 - 49578535 I a score=163925.000000 s hg38.chr1_KI270759v1_alt 66531 56 + 425601 ctccttatgagaatctaatgcctgatgatctgaggtggagcagtttcatcccatct s panTro4.chr1 224814795 56 + 228333871 ctccttacgagaatctaatgcctgatgatctgaggtggagcagtttcatcccacct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172340 56 - 229942017 ctccttacgagaatctaatgcctgatgatctgaggtggaacagtttcatcccatct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061631 56 - 143122389 ctccttacgagaatctaatgcctgatgatctgaggtggaacagtttcatcccatct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16777444 56 - 229590362 ctcgttacgagaatctaatgcctgatgatctgaggcggagcagttttatcccattt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223539873 56 - 227556264 ctcgttacgagaatctaatgcctgatgatctgaggcggagcagttttatcccattt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16589974 55 - 220367699 CTCGttacgagaatctaatgcctgatgatctgaggcgGAGCAG-TTTATCCCAttt i papAnu2.chr1 C 0 I 1292 s chlSab2.chr25 82389624 56 + 85787240 ctccttacgagaatctaatgcctgatgatctgaggtggagcagttttatccctttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14067743 56 - 49578535 ccccttatgagaatctaatgcctgatggtctgaggtggaaacgtttcatcccatct i calJac3.chr19 I 9 C 0 e mm10.chr1 178684272 18 + 195471971 I e canFam3.chr7 36255363 0 + 80974532 C a score=19290.000000 s hg38.chr1_KI270759v1_alt 66587 11 + 425601 ccgcgccctat s panTro4.chr1 224814851 11 + 228333871 ccgtgccctat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172396 11 - 229942017 ctgccccctat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061687 11 - 143122389 ctgccccctat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16777500 11 - 229590362 ccgccccctat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223539929 11 - 227556264 ccgccccctat i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82389680 10 + 85787240 ccgccccc-at i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14067799 11 - 49578535 ctgccccctaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178684272 18 + 195471971 I e canFam3.chr7 36255363 0 + 80974532 C e papAnu2.chr1 16590029 1292 - 220367699 I a score=751815.000000 s hg38.chr1_KI270759v1_alt 66598 277 + 425601 ttgtctgccatgaagctggtccctggtgccaaaaaggttgggaatcactgCTCTAGAATCTTCAtcttttttcttccaacttttatttctggtttgggggtacacgtgcaggtttgttatgtgggtaaattgtgtgtcactggggtttgatgtacaaatgattttgtcacccaggtagtgagcatagtacccaaaaggtggttttcc----gatcctcaccctcctcccaccctccacccccaagtaggcccagtgtctattgttcctcgtctttgtagcc s panTro4.chr1 224814862 277 + 228333871 ttgtcttccatgaagctggtccctggtgccaaaaaggttgggaatcactgCTCTAGAATCTTCAtcttttttcttccaacttttatttctggtttgggggtacacgtgcaggtttgttatgtgggtaaattgtgtgtcactggggtttgatgtacaaatgattttgtcacccaggtagtgagcatagtacccaaaaggtggttttct----gatcctcaccctcctcccaccctccacccccaagtaggcccagtgtctattgttccttgtctttgtagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172407 277 - 229942017 ttgtcttccatgaagctggtccctggtgccaaaaaggttgggaatcactgCTCTAGAATCTTCAtcttttttcttccaacttttatttctggtttgggggtacacgtgcaggtttgttatgtgggtaaattgcgtgtcactggggtttggtgtacaaatgattttgtcacccaggtagtgaacatagtacccaatgggtggttttcc----gatcctcaccctcctcccaccctccacccccaagtaggcccagtgtctattgttcctcgtctttgtagcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061698 276 - 143122389 ttgtcttccatgaagctggtccctggtgccaaaaaggttgggaatcactgCTCTAGAATCTTCAtcttttttcttccaacttttatttctggtttgggggtacacgtgcaggtttgttatgtgggtaaa-tgtgtgtcactggggtttggtgtacaaatgattttgtcacccaggtggtgagcatagtacccaataggtggttttcc----catcctcaccctcctcccaccctccacccccaagtaggcccagtgtctattgttctctgtctttgtagcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16777511 277 - 229590362 ttgtcttccatgaatccggtcccaggtgttgaaaaggctgggaatcactgCTCTAGAATCGTCATCCtttctcttacaacttttatttccggtttgggggtacatgtgcaggtttgttacatgggtaaattgcgtgtcactggggtttggtgtacagatgattttgtcacccaggtagcgagcatagtatttgagaggtggttttcc----gatcctcacccgcctcccaccctccacccccaagtaggcctggtgtctgttgttgcccgtctttgtagcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223539940 277 - 227556264 ttgtcttccatgaatccggtcccaggtgttgaaaaggctgggaatcactgCTCTAGAATCGTCATCCtttctcttacaacttttatttccggtttgggggtacatgtgcaggtttgttacatgggtaaattgcgtgtcactggggtttggtgtacagatgattttgtcacccaggtagcgagcatagtatttgagaggtggttttcc----gatcctcacccgcctcccaccctccacccccaagtaggcctggtgtctgttgttgcccgtctttgtagcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16591321 277 - 220367699 ttGTCTTCCATGAATCCGGTCCCAGGTGTTGAAAAGGCTGGGAATCACTGCTCTAGAATCGTCATCCTTTCTCTTACAACTTTTATTTccggtttgggggtacatgtgcaggtttgttacatgggtaaattgcgtgtcactggggtttggtgtacagatgattttgtcacccaggtagcgAGCATAGTATTTGAGAGGTGGTTTTCC----GATCCTCACccgcctcccaccctccacccccaagtaggcctggtgtctgttgttgccCGTCTTTGTAGCC i papAnu2.chr1 I 1292 C 0 s chlSab2.chr25 82389690 277 + 85787240 ttgtcttccatgaagctggtccctggtgtcggaaaggctgggaatcactgCTCTAGAATCGTCATCCtttttcttccaacttttatttcaggtttgggggtacatgtgcaggtttgttacgtgggtaaattgcgtgtcactggggtttggtgtacagatgattttgtcgcccaggtagcgagcacagtatttgagaggtggttttcc----gatcctcacccgtctcccaccttccacccccaagtaggcctggtgtctgttgttgcccgtctttgtagcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14067810 240 - 49578535 ttgtcttccatgaaatgggtccctggtgccaaaaaggttggggatcactgCTCTAGAACCTTAA----tttttttccgacttttattttctgtttgggggtacatatgcgggtttgttaggtgggtgaa-----------------------------tgattttgccaccctggtggtgagcacagtaccccgtaggtcgttttctatggggtattc------ctcccaccctcca-ccccaagcaagcctggtatctatt-ttccccctcttcgtaacc i calJac3.chr19 C 0 C 0 e mm10.chr1 178684272 18 + 195471971 I e canFam3.chr7 36255363 0 + 80974532 C a score=44238.000000 s hg38.chr1_KI270759v1_alt 66875 14 + 425601 atgtgtTACAGCCT s panTro4.chr1 224815139 14 + 228333871 atgtgtTACAACCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172684 14 - 229942017 atgtgtTACAACCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061974 14 - 143122389 gtgtgtTACAACCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16777788 14 - 229590362 atgtgtaACAACCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223540217 14 - 227556264 atgtgtaACAACCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16591598 14 - 220367699 ATGTGTAACAACCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82389967 14 + 85787240 atgtgtTACAACCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14068050 14 - 49578535 atgtgtTAGAACCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36255363 14 + 80974532 ATGCTCCAGAACCT i canFam3.chr7 C 0 C 0 e mm10.chr1 178684272 18 + 195471971 I a score=566664.000000 s hg38.chr1_KI270759v1_alt 66889 142 + 425601 TCATTTGACCACATGAAATTGTGACTTTGAAAGGATGTGTCTAGATTAGTTCCTTGTAATCAACTACAGATTAGTTACCTCTTTTTGAATGGCAGCTGCTTTTGCCTGATTAACATTTATTATAGTCAATAACTGCAGGAAA s panTro4.chr1 224815153 142 + 228333871 TCATTTGACCACATGAAATTGTGACTTTGAAAGGATGTGTCTAGATTAGTTCCTTGTAATCAACTACAGATTAGTTACCTCTTTTTGAATGGCAGCCGCTTTTGCCTGATTAACATTTATTATAGTCAATAACTGCAGGAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172698 142 - 229942017 TCATTTGACCACATGAAATTGTGACGTTGAAAGGATGTGTCTAGATTAGTTCCTTGTAATCAACTATAGATTAGTTACCTCTTTTTGAATGGCAGCTGCTTTTGCCTGATTAACATTTATTATAGTCAATAACTGCAGGAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140061988 142 - 143122389 TCATTTGACCACATGAAATTGTGACTTTGAAAGGATGTGCCTAGATTAGTTCCTTGTAATCAACTACAGATTAGTTACCTCTTTTTGAATGGCAGCTGCTTTTGCCTGATTAACATTTATTATAGTCAATAACTGCAGGAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16777802 142 - 229590362 TCATTTGACCACATGAAATTGTGACTTTGAAAGGATGTGTCTAGATTAGTTCCTTGTAATCAACTACAGATTAGTTACCTCTTTTTGAATGGCAGCTGCTTTTGCCTGATCAGCATTTTTTATAGTCAATAACTGCAGGGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223540231 142 - 227556264 TCATTTGACCACATGAAATTGTGACTTTGAAAGGATGTGTCTAGATTAGTTCCTTGTAATCAACTACAGATTAGTTACCTCTTTTTGAATGGCAGCTGCTTTTGCCTGATCAGCATTTTTTATAGTCAATAACTGCAGGGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16591612 142 - 220367699 TCATTTGACCACATGAAATTGTGACTTTGAAAGGATGTGTCTAGATTAGTTCCTTGTAATCAACTACAGATTAGTTACCTCTTTTTGAATGGCAGCTGCTTTTGCCTGATCAGCATTTTTTATAGTCAATAACTGCAGGGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82389981 142 + 85787240 TCATTTGACCACATGAAATTGTGACTTTGAAAGGATGTGTCTAGATTAGTTCCTTGTAATCAACTACAGATTAGTTACCTCTTTTTGAATGGCAGCTGCTTTTGCCTGATCAGCATTTTTTATAGTCAATAACTGCAGGGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14068064 142 - 49578535 TCATTTGACCATGTGAAATTGTGACTTTGAAAGGATGTGTCTAGATTAGCTCCTTGTAATCAACTACAGATTAGTTATCTCCTTTTGAGTAGCAGCTGCTTTTGCCTGATTTACATTTACTATAGTAAATAACTGCGGGAAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178684290 140 + 195471971 TCCTTTGGCCATGTG-AGTTTTGACACTAAAAGGATATGAGGATATCAGC-CCTCCTGCTCATCTATAGGTTAATTATCTCCTTCCAAACGGAAGCTGCTTTGGCCTGATTCATTCTCACAACGGTAAATGGCCACAGGAAA i mm10.chr1 I 18 I 116 s canFam3.chr7 36255377 141 + 80974532 TCCTTGGGCCACAC-AGGTTCAGACTTAGAAAAGACATGGCTGAGTTAGTTCCTGGTAGTCAACCACAGATTAACTTCATCATTTTGCATGGCAGCTGCTTTTGCCTGATTTCTATTCATTATCGTAAATAACTGCAGGAAA i canFam3.chr7 C 0 C 0 a score=392717.000000 s hg38.chr1_KI270759v1_alt 67031 154 + 425601 GACTGTA-CACATAACACACGGAGTT-ATAGGATGTTGGTGATGTTGGTGT-------TGGAATGCACCTGTGTAGGATGGTAACTGTCTTTTGCATCATGGTAGGAgatttggagacagagtcttacc-tagttcaagcctgtggtcccaccaactattaaac s panTro4.chr1 224815295 154 + 228333871 GACTGTA-CACATAACACACGGAATT-ATAGGATGTTGGTGATGTTGGTGT-------TGGAATGCACCTCTGTAGGATGGTAACTGGCTTTTGCATCATGGTAGGAAatttggagacagagtcttacc-tagttcaagcctgtggtcccaccaactattaaac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172840 151 - 229942017 GACTGTA-CACATAACACACAGAATT-ACAGGATGTTGGTGATGTTGGTGT-------TGGAATCCACCTCTGTAGGATGGTAGCTGGCTTTTGCATCATGGTAG---ATCTGGAGACAGAGTCTTACC-TAGTTCAAGCCTGTGGTTCCACCAACTATTAAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140062130 145 - 143122389 GACTGTA-CATATAACACACAGAATT-ATAG---------GGTGTTGGTGT-------TAGAATCTACCTCTGTAAGATGGTAACTGGCTTTTGCATCATGGCAGGAGATTTTGAGACACAGTCTTATC-TAGTTCAAGCCTGTGGTTCTACCAACTATTAAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16777944 143 - 229590362 GACTGT--------ACACACAGAATT-ATAGGATGTTGGTGATGTTGGTGT-------TAGAATGCACCTCTGTAGGATG----TAGGCTTTTGCATCATGGTAGGAGATTTGGAGACAGAGTCTTATC-TAGTTCAAGCCTGTAGTTCCACCAACTATTAAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223540373 143 - 227556264 GACTGT--------ACACACAGAATT-ATAGGATGTTGGTGATGTTGGTGT-------TAGAATGCACCTCTGTAGGATG----TAGGCTTTTGCATCATGGTAGGAGATTTGGAGACAGAGTCTTATC-TAGTTCAAGCCTGTAGTTCCACCAACTATTAAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16591754 143 - 220367699 GACTGT--------ACACACAGAATT-ATAGGATGTTGGTGATGTTGGTGT-------TAGAATGCACCTCTGTAGGATG----TAGGCTTTTGCATCATGGTAGgagatttggagacagagtcttatc-tAGTTCAAGCCTGTAGTTCCACCAACTATTAAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82390123 147 + 85787240 GACTGT--------ACACACAGAATT-ATAGGATGTTGGTGATGTTGGTGT-------TAGAATGCACCTCTGTAGGATGGTAACTGGCTTTTGCATCATGGTAGGAGATTTGGAGACAGAGTCTTATC-TAGTTCAAGCCTGTAGTTCCACCAACTATTAAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14068206 134 - 49578535 CACTGT--------ACACATCAGAAT-ATAG---------GATGTTGGTGT-------CAGAATCCACTTCCGTAGG-TGGTA-ATGGCTCTTGTATCATGGTAGGAgatttggagacagagtcttatc-tagttcaag-gtgtggttcca-caactattaaac i calJac3.chr19 C 0 C 0 s canFam3.chr7 36255518 155 + 80974532 ------GACATATAACACTCAGAATCAATAGAATGTTCA-GATTCCAATCCAGAATCGTGGAATCCAGTTCTATAGACCGGTTGCTGTCTTTTGTATCACGGTGGGAGATTCGGAGAC--TGTCTCACCAGGGGTTAAGTCGATGACTCCAACACTTGTTGAAC i canFam3.chr7 C 0 I 222 e mm10.chr1 178684430 116 + 195471971 I a score=980213.000000 s hg38.chr1_KI270759v1_alt 67185 299 + 425601 cagtttagtagcttgacatcttagtctatttcctcacctatgaaattcctacctcatggggtgattatagggaacaattaagaagaaggcgtgaaaatattttatgaactataaagCAGGAATACCGGtataaattatctatttcaaccttttcatttaccagaggagaaacctgaggctgaga-gatttgaagCTTCTTTTGTTCAGAGTTTTCTAAATCCTAGTTTGATCTCTTTTGCTAAATCACACACTCTTGGACAACA-GGGACTCATTTTATTCTCACATCCCTCACAGCAGCT s panTro4.chr1 224815449 299 + 228333871 cagtttagtagcttgacatcttagtctagttcctcacctatgaaattcctacctcatggggtgattatagggaacaattaagaagaaggtgtgaaaatattttatgaactataaagcaggaataccagtataaattatctatttcaaccctttcatttaccagaggagaaacctgaggctgaga-gatttgaagCTTCTTTTGTTCAGAGTTTTCTAAATCCTAGTCTGATCTCTTTTGCTAAATCACACACTCTTGGACAACG-GGGACTCATTTTATTCTCACGTCCCTCACAGCAGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226172991 299 - 229942017 CAGTTTAGTAGCTTGACATCTTAGTCTATTTCTTTACCTATGAAATTcctacctcatggggtgattataggaaacagttaagaagaaggtgtgaaaatattttatgaactataaagcaggaataccagtataaatgatctatttcaaccctttcatttaccagaggagaaacctgaggctgaga-gatttgaagCTTCTTTTGTTCAGAGTTTTCTAAATCCTAGTTTGATCTCTTTTGCTAAATCACACACTCTTGGGCAACA-GGGACTCATTTTATTCTCATGTCCCTCACAGCAGCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140062275 299 - 143122389 CAGTTTAGTAGCTTGACATCTTAGTCTATTTCCTTACCTATGAAATTcctacctcatggggtgattatagggaacaattaagaagaaggtgtgaaaatattttatgaactataaagcaggaataccagtataaattgtctatttcaaccctttcatttaccagaggagaaacctgaggctgaga-gagttgaagCTTCTTTTGTTCAGAGTTTTCTAAATCCTAGTTTGATCTCTTTTGCTAAATCACACACGCTTGGACAACA-GGGACTCATTTTATTCTCATGTCCCTCACAGCAGCT i nomLeu3.chr5 C 0 M 100 s rheMac3.chr1 16778087 298 - 229590362 CAGTTTAGAAGCTTGACATCTTAGTCTATTTCATTACCTATTAAATTcctacctcacagggtgattatagggaacaattaagaagaaggtgtgaaaatattttatgaactataaagcaggaatacc-gtataaattatctatttcaaccctttcatttgccagaagagaaaccttaggctgaga-gatttgaagCTTCTTTTGTTTAGAGTTTTCTAAATCCTAGCTGAATCTCTTTTACTAGATCACACACTCTTGGACAACA-GGGACTCATTTTATTCTCATGCCCCTCACAGCAGCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223540516 298 - 227556264 CAGTTTAGAAGCTTGACATCTTAGTCTATTTCATTACCTATTAAATTcctacctcacagggtgattatagggaacaattaagaagaaggtgtgaaaatattttatgaactataaagcaggaatacc-gtataaattatctatttcaaccctttcatttgccagaagagaaaccttaggctgaga-gatttgaagCTTCTTTTGTTTAGAGTTTTCTAAATCCTAGCTGAATCTCTTTTACTAGATCACACACTCTTGGACAACA-GGGACTCATTTTATTCTCATGCCCCTCACAGCAGCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16591897 298 - 220367699 CAGTTTAGAAGCTTGACATCTTAGTCTATTTCATTACCTATTAAATTCCTACCTCACAGGGTGATTATAGGGAACAATTAAGAAGAAggtgtgaaaatattttatgaactaTAAAGCAGGAATACT-GCATAAATTATCTATTTCAACCCTTTCATTTGCCAGAAGAGAAACTTTAGGCTGAGA-GATTTGAAGCTTCTTTTGTTTAGAGTTTTCTAAATCCTAGCTGAATCTCTTTTACTAGATCACACACTCTTGGACAACA-GGGACTCATTTTATTCTCATGCCCCTCACAGCAGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82390270 298 + 85787240 CAGTTTAGTAGCTTGACATCTTAGTCTATTTCCTTACCTATTAAATTcctacttcacagggtgattatagggaacaattaagaagaaggtgtgaaaatattttatgaactataaagcaggaatacc-gtataaattatctatttcaaccctttcatttgccagaagagaaacctgaggctgaga-gatttgaagCTTCTTTTGTTCAGAGTTTTCTAAATCCTAGCTGAATCTCTTTTAGTAGATCACACACTCTTGGACAACA-GGGACTCATTTTGTTCTCATGCCCCTCACAGCAGCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14068340 297 - 49578535 cagcttagtagcttga-atctgagtctatttccttacctgtgaaactcctccctcacaacgtgattatagg-aacaattacgaagagggtgtgaaaatattttatgaactagaaagcaggaataccaatataaATCAACTACTTCAACC-TTTCCTTTCCCAGAGGAGAGACCTGAAGCTGAGATGTTCTGAAGCTTCCTTTGCTT-GAGTTTCCTAAACCCTAGTTTGATCCCTTTTGCTAGATTACAGACTCTTAGACAACAGGGGACTCATATGGTTCTCATGTCCCTCACAGCAGCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36255895 269 + 80974532 CAGTTTAGTAGCTTGACATCT-----TATTTCCTCACCAATGGAA------CCTTGTAAGGTTGTTGGATGACAGAATTAAGAAAAA--TATGAAAATAATTTATAAACTATAAGGCAGGGATACCAGTATTAatgatctcttctaatctcctcctttgccaaaagagaagcccgaggctaaaa-gatatgaaa--ttctttgttcagagttt---------------gagctcttttgctagattacagactccttgagaaca-cagatgccttttatgcttatgtccctcacagcagct i canFam3.chr7 I 222 C 0 e mm10.chr1 178684430 116 + 195471971 I a score=287761.000000 s hg38.chr1_KI270759v1_alt 67484 113 + 425601 AACGTGAA-AATGTTGTTCTTTATTAGAGACAGCTCCTATCTCAGGGATGCACTACAA--TTACTTTCCATGACTGGCCCTA-GTTTAGGAAAGAATTCCAGGCC-AAAGACCTATCT s panTro4.chr1 224815748 113 + 228333871 AACGTGAA-AATGTTGTTCTTTGTTAGAGACAGCTCCTATCTCAGGGATGGACTACAA--TTACTTTCCATGACTGGCCCTA-GTTTAGGAAAGTATTCCAGGCC-AAAGACCTATCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226173290 113 - 229942017 AACATGAA-AATGTTGTTCTTTATTAGAGACAGCTCCTATCTCAGGGATGTACTACAA--TTACTTTCTATGACTGGCCCTA-GTTTAGGAAAGAATTCCAGGCC-AAAGACCTATCT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16778385 113 - 229590362 AACGTGAA-AATGTGGTTCTTTATTAGAGACAGCTCCTATCTCAGGGGAGCACTACAA--TTACTTTCTATGACTGACCATA-GTTTAGGAAAGAATTCCAGGCC-AAAGACCTATCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223540814 113 - 227556264 AACGTGAA-AATGTGGTTCTTTATTAGAGACAGCTCCTATCTCAGGGGAGCACTACAA--TTACTTTCTATGACTGACCATA-GTTTAGGAAAGAATTCCAGGCC-AAAGACCTATCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16592195 113 - 220367699 AACGTGAA-AATGTGGTTCTTTATTAGAGACAGCTCCTATCTCAGGGGAGCACTACAA--TTACTTTCTATGACTGACCATA-GTTTAGGAAAGAATTCCAGGCC-AAAGACCTATCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82390568 113 + 85787240 AACGTGAA-AATGTGGTTCTTTATTAGAGACAGCTCCTATTTCAGGGGAGCACTACAA--TTATTTTCTATGACTGACCCTA-GTTTAGGAAAGAATTCCAGGCC-AAAGACCTATCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14068637 113 - 49578535 AACGTGCA-CATGTGGGTCTTCATTAGAGAGAGCTCCTGCGTCAGGGGAGCAGTGTAA--TCATTTCCCATGACTGGCCCTA-GTTTGGGAAAGAATTCTAGGCC-AAAGACCTATCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36256164 118 + 80974532 aacatgtgcaaagtggctgctcCTTAGAGAAAATGTCAGTCTCAGGGGAACATGATAAAGGTGTTTATCATGACTAGCCCTAGGTTCAGGAAACAATTCTGGGCCAAAAGACCTATCC i canFam3.chr7 C 0 C 0 e mm10.chr1 178684430 116 + 195471971 I e nomLeu3.chr5 140062574 100 - 143122389 M a score=194905.000000 s hg38.chr1_KI270759v1_alt 67597 55 + 425601 AGAACCCAAGGATTTAGGTGGAAACCACCAGGTATTTGATTCCAAGCTAATCTTT s panTro4.chr1 224815861 55 + 228333871 AGAACCCAAGGATTTAGGTGGAAACCACCAGTTATTTGATTCCAAGCTAATCTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226173403 55 - 229942017 AGAACCCAAGGATTTAGATAAAAACCACCAGTTATTTGATTCCAAGCTAATCTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140062675 55 - 143122389 AGAACCCATGGATTTAGGTGGAAACCACCAGTTATTTGATTCCAAGCTAATCTTT i nomLeu3.chr5 M 100 C 0 s rheMac3.chr1 16778498 55 - 229590362 AGAACCCAAGGATTTTGGTGGAAACCACCAGTCATTCGATTCCAAGCTAATCTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223540927 55 - 227556264 AGAACCCAAGGATTTTGGTGGAAACCACCAGTCATTCGATTCCAAGCTAATCTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16592308 55 - 220367699 AGAACCCAAGGATTTTGGTGGAAACCACCAGTCATTCGATTCCAAGCTAATCTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82390681 55 + 85787240 AGAACCCAAGGATTTTGGTGGAAACCACCAGTCATTCGATTCCAAGCTAATCTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14068750 55 - 49578535 AGAACCAAAGAATTTTGGTGGAAACTACCAGTTATTTGATTCCAAGCTAATCTTT i calJac3.chr19 C 0 I 302 s canFam3.chr7 36256282 55 + 80974532 AGACCCCAAGATTTTTGGTGGAAACCACTAGTGAATTGGCACCAAGCAAATCTCT i canFam3.chr7 C 0 C 0 e mm10.chr1 178684430 116 + 195471971 I a score=613394.000000 s hg38.chr1_KI270759v1_alt 67652 176 + 425601 AACCTGAAGTGTCTTAATCATACTTAATAAATCCTTAGATGCAGTGGAAAGAACCTCGCTGGCATTTCG-ATGCCACACTCAATACAGGGGCATTTGAAAGGATAGAAGAGCTTTATTTCATAGGATTTCACTCGATTGAACTTGTCAAGAAAATTC-AGAAGATGTTAGCTTAATCT s panTro4.chr1 224815916 176 + 228333871 AACCTGAAGTGTCTTAATCACACTTAATAAATCCTTAGATGCAGTGGAAAGAAGCTCGCTGGCATTTCA-ATGCCACACTCAATACAGGGGCATTTGAAAGGATAGAAGAACTTTGTTTCATAGGGTTTCACTCGATTGAACTTGCCAAGAAAATTC-AGAAGATGTTAGCTTAATAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226173458 176 - 229942017 AACCTGAAGTATCTTAATTATACTTAATAAATCCTTAGATGCAGTGAAAAGAACCTAGCTGGCATTTTG-ATGCCACACTCAATACAGGGGCATTTGAAAGGATAGAAGAACTTTATTTCATAGGATTTCACTCGATTGAACTTGTCAAGAAAATTC-AGAAGATGTTAGATTAATAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140062730 176 - 143122389 AACCTGAAGTATCATAATCATACTTAATAAATCCTTAGATGCAGTGAAAAGAACCTAGCTGGCATTTTG-AGGCCACACTCAATACAGGGGCATTTGAAAGGATAGAAGAACTTTATTTCATAGGATTTCACTCAATTGAACTTGTCAAGGAAATTC-AGAAGATGTTAGATTAATAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16778553 176 - 229590362 AACCTGAAGTATCTTAATGATACTTAGTAAATCCTTAGATTCAATGAAAAGAACCTAGCTGGCATTTTG-ATGCCACACTCAATACAGGGGCATTTGAAAGGATAGAAGGACTTTATTTCATAGAACTTCACTCAATTGACCTTGTCAAGAAAATTC-AGAAGATATTAGATTAATAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223540982 176 - 227556264 AACCTGAAGTATCTTAATGATACTTAGTAAATCCTTAGATTCAATGAAAAGAACCTAGCTGGCATTTTG-ATGCCACACTCAATACAGGGGCATTTGAAAGGATAGAAGGACTTTATTTCATAGAACTTCACTCAATTGAACTTGTCAAGAAAATTC-AGAAGATATTAGATTAATAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16592363 176 - 220367699 AACCTGAAGTATCTTAATGATACTTAGTAAATCCTTAGATTCAATGAAAAGAACCTAGCTGGCATTTTG-ATGCCACACTCAATACAGGGGCATTTGAAAGGATAGAAGGACTTTATTTCATAGGACTTCACTCAATTGAACTTGTCAAGGAAATTC-AGAAGATATTAGATTAATAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82390736 176 + 85787240 AACCCGAAGTATCTTAATGATACTTAGTAAATCCTTAGATTCAATGAAAAGAACCTAGCTGGCATTTTG-ATGCCACACTCAATATAGGGGCATTTGAAAGGATAGAAGGACTTTATTTCATAGGACTTCACTCAATTGAACTTGTCAAGAAAATTC-AGAAGATATTAGATTAATAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14069107 177 - 49578535 AATCTGAAGTATCTTAATGATACTTAATAAATCCTTAGATGCAATGAAAAGAACCTAGCTGGCATTTTTCATGTCGCACTGAATACAGGGGCATTTGAAAGGATAGAAGAACTTTATTTCATAGGGTTTCACTCAGTTAAACTTGTCAAGAAAATTT-AGAAGATGTTAGAATAATAT i calJac3.chr19 I 302 I 1058 s canFam3.chr7 36256337 176 + 80974532 AACCAGAAGTATCTTCATGATTCTCAATAAATTCTTAGATGCAGCGCAAAGAATCCAGGTGGCATTT-G-ATGCCACACTCAACGTAGGTGCATTTGAAGGGCTAGAAGAACTTTATTTCACAGTGTTTCGATAAGGTGAACATGTCAAGCAAATTTAAGATGATGTTAGATTAATAC i canFam3.chr7 C 0 C 0 e mm10.chr1 178684430 116 + 195471971 I a score=1114105.000000 s hg38.chr1_KI270759v1_alt 67828 364 + 425601 ACAAGTAATAAATCCATAGTGG-----ACCGTTGATGCAATGAAGGTCGTCCATGTGCATTCCTTGAGTTGCAGGAAAATGCTCTTGATACAATTTTTCCTGCTTTCTCTAAAAA-CATGCATTGGAATGAATGTGAGAGGTAATGCTGGACTGAACACTGGCCGAAGTCATTATGAGGTAGTCTCTATTACAGCTTTAGAAATGA-TTGCGCCTATGAAGCACAGCCATTACTGGACTTTACATTTTAAGATATGAGCAC-AGTctgggcacggtggctcatgcctgtaatttcagcactttgg----------------------gaggccaaggtgagaactgcttgaggccaggagttagagaccagcctaggcaacagagtaaaacccc s panTro4.chr1 224816092 364 + 228333871 ACGAGTAATAAATCCGTAGTGG-----ACCGTTGATGCAATGAAGGTCATCCATGTGCATTCCTTGAGTTGCAGGAAAATGCTCTTGATACAATTTTTCCTGCTTTCTCTAAAAA-CATGCATTGGAATGAATGTGAGAGGTAATGCTGGACTGAACACTGGCTGAAGTCATCATGAGGTAGTCTCTATTACAGCTTTAGAAATGA-TTGCGCCTATGAAGCACAGCCATTACTGGACTTTACATTTTAAGATATGAGCAC-AGTctgggcacggtggctcgtgcctgtaatttcagcactttgg----------------------gaggccaaggtgagaactgcttgaggccgggagttagagaccagcctaggcaacatagtaaaacccc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226173634 364 - 229942017 ACAAGTAATAAATCTGTAGTGG-----ACCGTTGATGCAATGAGGGTCGTCCATGTGCATTCTTTGAGTTGCAGGAAAATGCTGTCAATACAATTTTTCCTGCTTTCTCTAAAAA-CATACATTGGAATTAATGTGAGAGGTAATGCTGGACTGAACTCTGGCTGAAGTCATTATGAGGTAGTCTTTATTACAGCTTTAGAAATGA-TTGTGCCTATGAAGCACAGCCATTACTGGGCTTTACATTTTAAGATATAAACAC-AGTctgggcacggtggctcatgcctgtaatttcagcactttgg----------------------gaggccaaggtgagaactgcttgaggccaggagttagagaccagcctaggcaacatagtaaaacccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140062906 364 - 143122389 GCAGGTAATAAATCCATAGTGG-----ACCGTTGATGCAATGAAGGCCGTCCATGTGGATTCTTTGAGTTGCAGGAAAATGCTCTTGATACAATTTTTCCTGCTTTCTCTAAAAA-CATGCATTGGAATTAATGTGAGAGATAATGCTGGACTGAACTCTGGCAGAAGTCATTAAGATGTGGTCTTTGTTACAGCTTTAGAAATGA-TTGTGCCTGTGAAGCACAGCCATTACTGGACTTTACATTTTAAGATATGAGCAC-AGTctgggcacggtggctcatgcctgtaatttcagcactttgg----------------------gaggccaaggtgagaattgcttgaggccaggagttagagaccagcctaggcaacatagtaaaacccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16778729 355 - 229590362 ACAAGTAATAAATCTGTCACGG-----ACCGTTGATAGA---------ATCCATGTGCATTCCTTGAGTTGGAGGAAAATGCTCTCAATACAATTTTTCCTGCATTCTCTAAAAA-CATCCATTGGAATTAACATGAGAGATAATGCTGGACTGAACTCTGGCTGAAATCATTATGAGGTAGTCTCTATTACAGCTTTAGGAACGA-CCATGCCTATGAAACATAGCCATTACTGGAATTTATATTTTAAGTTATGAGCAC-AGTctgggcacggtggctcatgcctgtaatttcagcactttgg----------------------gaggccaaggtgagaactgcgtgaggccaggagttagagaccagcctagacaacacagtaaaacccc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223541158 355 - 227556264 ACAAGTAATAAATCCGTCACGG-----ACCGTTGATAGA---------ATCCATGTGCATTCCTTGAGTTGGAGGAAAATGCTCTCAATACAATTTTTCCTGCATTCTCTAAAAA-CATCCATTGGAATTAACATGAGAGATAATGCTGGACTGAACTCTGGCTGAAATCATTATGAGGTAGTCTCTATTACAGCTTTAGGAACGA-CCATGCCTATGAAACATAGCCATTACTGGAATTTATATTTTAAGTTATGAGCAC-AGTctgggcacggtggctcatgcctgtaatttcagcactttgg----------------------gaggccaaggtgagaactgcttgaggccaggagttagagaccagcctagacaacatagtaaaacccc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16592539 364 - 220367699 ACAAGTAATAAATCCGTCACGG-----ACCGTTGATAGAATGAAGGTCATCCATGTGCATTCCTTGAGTTGGAGGAAAATGCTCTCAATACAATTTTTCCTGCATTCTCTAAAAA-CATCCATTGGAATTAACATGAGAGATAATGCTGGACTGAACTCTGGCTGAAATCATTATGAGGTAGTCTCTATTACAGCTTTAGGAACGA-CCATGCCTATGAAACATAGCCATTactggaatttatattttaagttatgagcac-agtctgggcacggtggctcatgcctgtaatttcagcactttgg----------------------gaggccaaggtgagaactgcttgaggccaggagttagaggccagcctagacaacatagtaaaacccc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82390912 386 + 85787240 ACAAGTAATAAATCCGTCACGG-----ACTGTTGATAGAATGAAGGTCATCCATGTGCATTCCTTGAGTTGGAGGAAAATGCTCTCAATACAATTTTTCCTGCATTCTCTAAAAA-CATCCATTGGAATTAACATGAGAGATAATGCTGGACTGAACTCTGGCTGAAGTCATTATGAGGTAGTCTCTATTACAGCTTTAGGAACGA-CCATGCCTATGAAACATAGCCATTACTGGAATTTATATTTTAAGTTATGAGCAC-AATctgggcacggtggctcatgcctgtaatttcagcactttgggaggccaaggtgagaactgcttgaggccaaggtgagaactgcttgaggccaggagttagagaacagcctagacaacatagtaaaacccc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14070342 363 - 49578535 ACAAGTAATAAATCCATAATGG-----AACATCGATACAAGGAAGGTAGTCCATGTGCATTCCTCCAGTTGGAGGAAAACAGTCTCCATACAGATTTTCCTGCTTTCTTTAAAAG-CAGCCATTGGAATGAATGTCAGAGATAATGCTGAACTGAGCTCTGGCTGAAGTCATGATGGGGTTGTCTCTATTACAGCTTTGGAAATAA-TTGTGCCTACGAAGCACAGTCATCATTGAGCTTTACATTTTAAGATGTGAGCAC-AGTctgggcacagtggctcaggcctgtaatttcagcac-ttga----------------------gaggccaaggtgagaactgcttggggccaggagttacagaccagcctagacaacacagtaaaacccc i calJac3.chr19 I 1058 C 0 s canFam3.chr7 36256513 320 + 80974532 AGAAGTAATAAATCCATAGCGGGATTTATCATTAACAGGACGAA-GTATTCGGCCTGTATTCCTTAAGTTAAAGGAAAATGCCTTTGGTAAAAATCTTCCTGCTTTCTCAAAAAAGCATCAGTTGGAATCAACGTCAGA--CAATGGTAGACTGAACTCTGGCTGAAGTCCGTGTGGGATTATCTCTATTATATCTCTAGAAATCAGTTGTGTCCTGTAAGCGCAGGCATTATTGGAGTCTACGTTTTAGGTCATGGGCAAGAGGACTGCAACAGTGGCATCAGTCTGGAAT-----------------------------------CGAGTCAAGGTCAG-------------------------------CTAAGC-----GGTAAGACCTC i canFam3.chr7 C 0 I 239 e mm10.chr1 178684430 116 + 195471971 I a score=567072.000000 s hg38.chr1_KI270759v1_alt 68192 270 + 425601 ttctctacacagaaataaaaaatcagccaggcgtggtggcatgcctgtagtcccagctactcagga-gggtgaggcgagagggttccttgagcccaggagttccaggctg----caggaagatgtgattgtaccactgcctgtaacctgggtgaca----gagacccgagaacctatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatGGGCACAAAAGGATGTAAAA s panTro4.chr1 224816456 212 + 228333871 ttctctacacagaaataaaaaatcagccaggcgtggtggcatgcctatagtcccagctacccggga-gggtgaggcgagagggttccttgagcccaggagttccaggctg----caggaagatgtgattgtaccactgcctgtaacctgggtgaca----gagacgtgagaccctatctcaaaaaaaaaaaa----------------------------------------------------------TATATATATGGGCACAAAAGGATGTAAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226173998 219 - 229942017 ttctctacacataaataaaaaattagccaggcgtggtggcatgcctgtagtcccagctactcagga-aggtgaggcaagagggttccttgagcccaggagttccaggctg----cagtaagatgtgatcgtaccactgcctgtaacctgggtgacagagtgagacccaagaccctatctcaaaaaaaaaaaaaaaaaaaa-------------------------------------------------------GTATGGGCACAAAAGGATGTAAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140063270 215 - 143122389 ttctctacacataaataaaaaattagccaggcacagtggcatgcctgtagtcccagctactcaggaggggtgaggcaagagggttccttgagcccaggagttccaggctg----cagtgagatgtgattgtaccactgcctgtaacctgggtgacagagtgagacccaagaccctatctcaaaaaaaaaaaaaaa------------------------------------------------------------GTATGGGCACAAAAGGATGTAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16779084 222 - 229590362 atctgtacagagaaataaaaaattagccaggcgtggtggcatgcctgtagtcccagttactcagga-ggatgaggcaagaagattccttgagcccaggagttccaggctg----cagtaagatgtgattgtaccactgcctacaacctgggtgacagagtgagacccaagaccctatctaaaaaaaaaaaaaaaaaaaaaaaaaa----------------------------------------------------aTGGGCACAAAAGGATGTAAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223541513 226 - 227556264 atctctacagagaaataaaaaattagccaggcgtggtggcatgcctgtagtcccagttactcagga-gggtgaggcaagaagattccttgagcccaggagttccaggctg----cagtaagatgtgattgtaccactgcctacaacctgggtgacagagtgagacccaagaccctatctaaaaaaaaaaaaaaaaaaaaaaagaaaG------------------------------------------------ATATGGGCACAAAAGGATGTAAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16592903 216 - 220367699 atctctacagagaaataaaaaattagccaggcgtggtggcacacctgtagtcccagttactcagga-gggtgaggcaagaagattccttgagcccaggagttccaggctg----cagtaagatgtgattgtaccactgcctacaacctgggtgacagagtgagacccaagaccctatctaaaaaaaaaaaaagaaagat----------------------------------------------------------atgggCACAAAAGGATGTAAAA i papAnu2.chr1 C 0 M 50 s chlSab2.chr25 82391298 221 + 85787240 atctctacagagaaataaaaaattagccaggcgtggtggcatgcttgtagtcccagttactcagga-gggtgaggcaagaagattccttgagcccaggagttccaggctg----cagtaagatgtgattgtaccactgcctacaacctgggtgacagagtgagacctaagaccctatctgaaaaaaaaaaaaaaaaagaaaGAT-----------------------------------------------------ATGGGCACAAAAGGATGTAAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14070705 210 - 49578535 atctctacagagaaat--aaagttagcca-gcgtggtggcatgcctgt-gtcccagctactcagga-gagtgaggctagagggttctttgagcccaggagtcacaggttgaggtcagtaagatgtgattgtaccactgactctcgcctcggcgacagagtgagacctgagactggatctcaaaaaaaaaaaaaaaa----------------------------------------------------------------GTCACAAAAGGATGCAAAA i calJac3.chr19 C 0 C 0 e mm10.chr1 178684430 116 + 195471971 I e canFam3.chr7 36256833 239 + 80974532 I a score=139438.000000 s hg38.chr1_KI270759v1_alt 68462 61 + 425601 GCAACACCAACCTCAACATATATCAAGGTTTGCTAAATGACAGGACCTCTGCGGTGCATAA s panTro4.chr1 224816668 61 + 228333871 GCAACACCAACCTCAACATATATCAAGGTTTGCTAAATGACAGGACCTCTGCGGTGCATAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226174217 61 - 229942017 GCAGCACCAACCTCAACATATATCAAGGTTTGCTAAACGGCAGGACCTCTGCGGTGCATAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140063485 61 - 143122389 GCAGCACCAAGCTCCACATATATCACGGTTTGCTAAATGGCAGGACCTCTGCGGTGCATAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16779306 61 - 229590362 GCAGCACCAACCTCAAAATATATCAAGGTTTGCTAAATGGCAGGACCTCTGCAGTGCATAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223541739 61 - 227556264 GCAGCACCAACTTCAAAATATATCAAGGTTTGCTAAATGGCAGGACCTCTGCAGTGCATAA i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82391519 61 + 85787240 GCAGCACCAACCTCAAAATATATCAAGGTTTGCTAAACGGCAGGACCTCTGCAGTGCATAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14070915 61 - 49578535 GCAGCACCAGCCTCAAAATAGATGGAAGTCTGCTGAACGGCAGGACCTCTGCAGTGCATAA i calJac3.chr19 C 0 C 0 e mm10.chr1 178684430 116 + 195471971 I e canFam3.chr7 36256833 239 + 80974532 I e papAnu2.chr1 16593119 50 - 220367699 M a score=642955.000000 s hg38.chr1_KI270759v1_alt 68523 275 + 425601 CACTTGCTCCTCCGA-------GATCAGAAGCCCTGGGG--GATCTTGGTGCTAGAGGACTTCCAAGCGCCCCTGCAGGAGGAAGGTGAGGCTCTGGGAGGCCCACCAAGTGCTGTTGTACTCAGAGGCTTTGCCGATTGTGGCTTCGTGGAAAGCAGAAGCGTGTGTTCTAGTATGGCTGATGTCGGGAGATGAGGTATACACGTGCTCTTCCCGGCCGAACCACTTTTCAAGAAGGAAC-AGGGGTGGGTGTTTCCAGCAGGTCAGGAGTATAGGATTTTCAT s panTro4.chr1 224816729 275 + 228333871 CACCTGCTCCTCCGA-------GATCAGAAGCCCTGGGG--GATCTTGGTGCTACAGGACTTCCAAGCGTCCCTGCAGGAGGAAGGTGAGGCTCTGGGAGGCCCACCAAGTGCTGCTGTACTCAGAGGCTTTGCCGATTGCGGCTTCATGGAAAGCAGAAGCGTGTGTTCTAGTATGGCTGATGTCGGGAGATGAGGTGTACACGTGCTCTTCCCGGCCGAACCACTTTTCAAGAAGGAAC-AGGGGTGGGTGTTTCCAGCAGGTCAGGAGTATAGGATTTTCAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226174278 274 - 229942017 CACTTGCTCCTCCAA-------GATCAGAAGCTCTGGGG--GATCTTGGTACTAGAGGACTTCCAAGCACCCCTGCAGGAAGAAGGTGAGGCTCTGTGAGGCCCACCAAGCGCTGCTGTACTCAGAGGCTTTGCCGATAGCGGCTTCAT-GAAAGCAGAAGCGTGTGTTCTAGTATGGCTGATGTCGGGACATGAGGTATACATGTGCTCTTCCCGGACGAACCACTTTTCAAGAAGGAAC-AGGGGTGGGTGTTTCTAGCAGGTCAGGAGTATAGGATTTTCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140063546 273 - 143122389 CACTTGCTCCTCCGA-------GATCAGAAGCCCTGGGG--GAACTTGGTGCTAGAGGACTTCCAAGTGCCCCTGCGGGAGGGAGGTGAGGCTCTGTGAGGCCCACCAAGTGCTGCTGTACTCAGAGGCTTTGCCGATAGCGGCTTCATGGAAAGCAGAAGCGTGTGTTCTAGCATGGCTGATGTCGGGAGATGAGGTATACACGTGCTCTTCCCGGCTGAACCAC-TTTCAAGAAGGAAC-AAGGGTGGGTGTTTCCAGCAGGTCA-GAGTATAGGATTTTCAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16779367 271 - 229590362 CACTTGCTCCTCCGA-------GATCAGAAGCCCTGGGG--GAGCTTGGTGCTAGCGGACTTCCGAGCGCCCCTGTAGGAGGAAGGTGAGGCTCTGTGAGGC---CCAAGTGCTGTTGTACTCAGAGGCTTTGCTTATAGCAGCTTCATGGAAAGCAGAAGCATGTTTTCTAGTATGGCTGATGTCGGGAGATGAGGTAGACACATGCTCTTCCCGGCCGAACCACTTTTCAAGAAGGCAC--GGGGTGGCTCTTTCCAGCAGGTCAGGAGTGGAGGATTTTCAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223541800 271 - 227556264 CACTTGCTCCTCCGA-------GATCAGAAGCCCTGGGG--GAGCTTGGTGCTAGTGGACTTCCGAGCGCCCCTGTAGGAGGAAGGTGAGGCTCTGTGAGGC---CCAAGTGCTGTTGTACTCAGAGGCTTTGCTTATAGCAGCTTCATGGAAAGCAGAAGCATGTTTTCTAGTATGGCTGATGTCGGGAGATGAGGTAGACACATGCTCTTCCCGGCCGAACCACTTTTCAAGAAGGCAC--GGGGTGGCTGTTTCCAGCAGGTCAGGAGTGGAGGATTTTCAC i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82391580 274 + 85787240 CACTTGCTCCTCCGA-------GATCAGAAGCCCTGGGG--GAGCTTGGTGCTAGCAGACTTCCGAGCGCCCC-GTAGGAGGAAGGTGAGGCTCTGTGAGGCCCACCAAGTGCTGTTGTACTCAGAGGCTTTGCTTATAGCAGCTTCATGGAAAGCAGAAGCATGTTTTCTAGTGTGGCTGATGTCGGGAGATGAGGTATACACATGCTCTTCCTGGCCGAACCACTTTTCAAGAAGGCAC-GGGGGTGGCTGTTTCCAGCAGGTCAGGAGTAGAGGATTTTCAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14070976 268 - 49578535 ATCTCGCACCTCAGA-------GATCAGAAGCCCTGGGG--GAACTTGCTGCTAGCGGATTTCCAGGTGTCCTGGTGGGAGGAGGG-GAGACTCTGTGAGGCCCACCAAGTGCTGTCGTACCCAGAGGCTTTGTTTATCCTGGCTTCCTGGAAACCAGAAGCACGTGTTCTAGGATGGCTGATGACGG-----GAGGCATACAAA-GCTCTTCGTGGCTGAACCACGTTTCCAGAAGGCGC-AGGGGTGGGTGTTTCCAGTAGGTCGGGAGTGTAGGATCTTCAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36257072 277 + 80974532 cagatgcttcaccgactgagccacccaggcgccccGGTGCTGGCCCTTTTTATGGAGGACTTCCAAGTGCCACTGCAAGAGGAAGGCAAGATTCT-----GCTCGCTAA-CGTCTCAGGACTCGGAGGCTTTGTTTAGGATGCATGCATGGAAACCAGGAGCACATGTTCTAGTGTAGCTGAGTCTGGGGG--GAGGTGTCCATGGGCTCCTTCCTGCTGAACTGCTTTGCAAGCAGGAGCCAGGGGCAGGTGTTGGTAGCCAGTCAGGAGCGGAGGATTCTCAT i canFam3.chr7 I 239 C 0 e mm10.chr1 178684430 116 + 195471971 I e papAnu2.chr1 16593119 50 - 220367699 M a score=84944.000000 s hg38.chr1_KI270759v1_alt 68798 33 + 425601 CCACGTTCTTCGCAGCTCTTGAGGGCTCATCCA s panTro4.chr1 224817004 33 + 228333871 CCACGTTCTTCGCAGCTCTTGAGGGCTCATCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226174552 33 - 229942017 CCACGTTCTTTGCAGCTCTTGAGGGCTCATCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140063819 33 - 143122389 CCATGTTCTTCGCAGCTCTTGAGGGCTCATCCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16779638 33 - 229590362 CCGTGTTCTTCCCAGCTCTCGAGGGCTCATTCA i rheMac3.chr1 C 0 I 126 s macFas5.chr1 223542071 33 - 227556264 CCGTGTTCTTCCCAGCTCTCGAGGGCTCATTCA i macFas5.chr1 C 0 I 126 s papAnu2.chr1 16593170 33 - 220367699 CCGTGTTCTTCCCAGCTCTCGAGGGCTCATTCA i papAnu2.chr1 M 50 C 0 s chlSab2.chr25 82391854 33 + 85787240 CCATGTTCTACCCAGCTCTCGAGGGCTCGTTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14071244 33 - 49578535 TCCCATTCCTCGCAGCTCTTGAGGGTGCACTCA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36257349 16 + 80974532 TCATGTTCTTTG-----CTTG------------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178684430 116 + 195471971 I a score=501190.000000 s hg38.chr1_KI270759v1_alt 68831 168 + 425601 GCCACTTGTGCCCTGAAATATGCAGCACACCCCTTCTTGGGCCAGCACTGGGGT------------CACCTGCTTCCCACTTGCTGCTGTGTCTACCCAGTCA-GGCAATAGTGTAAGATGCCACGATTAGACCAATTATGACGTGGAAGAGATTC----TTAAGACCAT-GGGTTTTGTTTTCTC-- s panTro4.chr1 224817037 168 + 228333871 GCCACTTGTGCCCTGAAATATGCAGCACACCCCTTCTTGGGCCAGCACTGGGGT------------CACCTGCTTCCCACTTGCTGCCGTGTCTGTCCCATCA-GGCAATAGTGTAAGATGCCACGATTAGACAAATGATGACGTGGAAGAGATTC----TTAAGACCAT-GGGTTTTGTTTTCTC-- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226174585 168 - 229942017 GCCACTTGTGCCCTGAAATATGCAGCACACCCCTTCTTGGGCCAGCACTGGGGT------------CACTTGCTTCCCACTTGCTGCTGTGTCTGCCCAGCCA-GGCAATAGTGTAAGATGCCACGATTAGACAAATTATGATGTGGAAGAGATTC----TTAAGACCAT-GAGTTTTGTTTTCTC-- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140063852 168 - 143122389 GCCACTTGTGCCCTGAAATATGCAGCACTCCCCTTCTTGGGCCAGCACTGGGGC------------CACTTGCTTCCCACTTGCTGCTGCGTCTGCCCAGCCA-TTCTCTCTGGTTGCATGCCATGATTACACCAATTATGACGTGCAAGATATTC----TTACCACCAT-GGGTTTTGTTTTCTC-- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16779797 168 - 229590362 GCCACTCGTGCCCTGGAACATGCAGCGCACCCCTTCCTGGGCCAGCACTGGGGT------------CACTTGCTTTCCTCTTGCCGCTGCTTCTGCCCAGCCA-GGCAATAGTGTAAGATGCCATGATTAGACAAGCTATGATGTGGAAGAGATTC----TGAAGACCAT-GGGTTTTGTTTTCTC-- i rheMac3.chr1 I 126 C 0 s macFas5.chr1 223542230 168 - 227556264 GCCACTCGTGCCCTGGAACATGCAGCGCACCCCTTCCTGGGCCAGCACTGGGGT------------CACTTGCTTTCCTCTTGCCGCTGCTTCTGTCCAGCCA-GGCAATAGTGTAAGATGCCACGATTAGACAAGCTATGACGTGGAAGAGATTC----TGAAGACCAT-GGGTTTTGTTTTCTC-- i macFas5.chr1 I 126 C 0 s papAnu2.chr1 16593203 168 - 220367699 GCCACTCGTGCCCTGGAACATGCAGCGCACCCCTTCTTGGGCCAGCACTGGGGT------------CACTTGCTTTCCTCTTGCCGCTGCTTCTGCCCAGCCA-GGCAATAGTGTAAGATGCCACGATTAGACAAGCTATGACGTGGAAGAGATTC----TGAAGACCAt-gggttttgttttctc-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82391887 168 + 85787240 CCCACTCGTGCCCTGGAATATGCAGCGCACCCCTTTCTGGGCCTGCACTGGGGT------------CACTTGCTTCTCTCTTGCTGCTGCTTCTGCCCAGCCA-GGCAATAGTGTAAGATGCCACGATTAGACAAGCTATGACGTGGAAGAGATTC----TGAAGACCAT-GGGTTTTGTTTTCTC-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14071277 167 - 49578535 GCCACTTGTGCCCTGAATTATGCTGCACCCCGCATCGTGCGCCAGCACTGCAGT------------CAGATGCTT-CCATTTGCTGCGGCGTCTGCCCAGCCA-GGCAATAGTGTAAGATGTGGCTGGTAGACAAAGTATGACGCTGACGAGATTC----TTAAGACCAC-GGGTTTTGCTTTCTC-- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36257365 187 + 80974532 GCCATTTGTCCCCTGAAATATGCA-CAGTGCCTTTCTTGGGCCAGCCCTGGTGTCCGtttgctgcccatttgctgcccatttgctgcTACTTTTGCCCAGCCAGGGCAATAGCACGAGATGTCATCATTTGACAAATTGTGACATCAAAACAATTCTTTTTTAACATGATAGGGTTTTTTTTTTTCAC i canFam3.chr7 C 0 C 0 e mm10.chr1 178684430 116 + 195471971 I a score=1117408.000000 s hg38.chr1_KI270759v1_alt 68999 323 + 425601 CTGTTTATAGGCGGTCAAAGG---GATATTAGGTTATGTATCTTTATG-------CTTTTTGACAAATTATGAACATGGAAAAAAGAATCAATTTGTATATTCGGTCATGGACAC-ACATTTCTCAAGGCTAGAGTGTTCAGGGTGAAATTCCAAAAGGGTAGTCACAGCTTATGAAT-ATGGATGGGGCC-GTGGTCTGAAGGGAACACCCAGACTTCACTAGGAAACTTCAAAAATACGTTCAATCTGGGCGTTTGCTTGGtgtggtagactgaataggggccccccaacgatgcccacaccctaatccccgcaa------tc------tgtggatgtgttacctt s panTro4.chr1 224817205 323 + 228333871 CTGTTTGTAGATGGTCAAAGG---GATATTAGGTTATGTATCTTTATG-------CTTTTTGACAAATTATGAACACGGAAAAAAGAATCAATTTGTATATTTGGTCATGGACAC-ACATTTCTCAAGGCTAGAGTGTTCAGGGTGAAATTCCAAAAGGGTAGTCACAGCTTATGAAT-ATGGATGGGGCC-GTGGTCTGAAGGGAACACCCAGACTTCATTAGGAAAATTCAAAAATACGTTCAATCTGGGCGTTTGCTTGGtgtggtagactgaataggggcaccccaacgatgcccacaccctaatccccgcaa------tc------tgtggatgtgttacctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226174753 322 - 229942017 CTGTTTATAGATAGTCAAAGG---GATATTAGGTTATGTATCTTTATG-------CTTTTTGACAAATTATGAACACAG-AAAAAGAATCGATTTGTATATTCGGTCATGGACAG-GCATTTCTCAAGGCTAGAGTGTTCAGGGTGAAATTCTGAAAGGGTAGTCGCAGCTTATGAAT-ATGGATGGGGCC-GTCCTCTGAAGGGAACACCCAGACTTCATTAGGAAAATTCAAAAATATGTTCAATCTGCACATTTGTTTGGtgtggtagactgaataggggccccccaacgatgcccacaccctaatccccacaa------tc------tgtggatgtgttacctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140064020 323 - 143122389 CTGTTTATCAATGGACTAAGG---GAAATTAAGTTATATGTCTTTATG-------CTTTTTGACAAATTGTGAACACAGAAAAACGAATCAATTTGTATATTCGGTCAAGGACAG-GCATTTCTCAAGGCTAGAGTGTTCAGGGTGAAATTCCAAAAGGGTAGTCACAGCTTATGAAT-ATGGATGGGGCC-GTCGTCTGAAAGGAACACCCAGACTTTATTAGGAAAATTCAAAAATAGGTTCAATCTGGGCATTTGCTTGGtgtggtagactgaataggggccccccaacgatgcccacaccctaatccccacaa------tt------tgtgggtgtgttacctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16779965 323 - 229590362 CTGTTTATAGATGGTCAAAGG---GATATTCGGTTATGTATCTTTATG-------CTTTTTGACAAATCATGAACGCAGGAAAGAGAATCAGTTTGTATATTCGGTCATGGACAG-ACATTTCTCAAGGCTAGAGTGTTCAGGGTGAAATTCCAAAAGGGTAGTCACAGCTTATGATT-ATGGATGGGGTC-GTGGTCTGAAGGGAGCACCCAGACTTCATTGGGAAAATTCAAAAATACGTTCAATCTGGGCATTTGCTTGGtgtggtagactgaagaggggccccccaaggatgcccacaccctgatccccacaa------tc------tgtggatgtcttacctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223542398 323 - 227556264 CTGTTTATAGATGGTCAAAGG---GATATTCGGTTATGTATCTTTATG-------CTTTTTGACAAATCATGAACGCAGGAAAGAGAATCAGTTTGTATATTCGGTCATGGACAG-ACATTTCTCAAGGCTAGAGTGTTCAGGGTGAAATTCCAAAAGGGTAGTCACAGCTTATGATT-ATGGATGGGGTC-GTGGTCTGAAGGGAGCACCCAGACTTCATTGGGAAAATTCAAAAATACGTTCAATCTGGGCATTTGCTTGGtgtggtagactgaagaggggccccccaatgatgcccacaccctgatccccacaa------tc------tgtggatgtcttacctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16593371 323 - 220367699 ctgtttATAGATGGTCAAAGG---GATATTCGGTTATGTATCTTTATG-------CTTTTTGACAAATCATGAACGCAGGAAAGAGAATCAGTTTGTATATTCGGTCTTGGACAG-ACATTTCTCAAGGCTAGAGTGTTCAGGGTGAAATTCCAAAAGGGTAGTCACAACTTATGAAT-ACGGATGGGGCC-GTGGTCTGAAGGGAGCACCCAGACTTCATTGGGAAAATTCAAAAATACGTTCTATCTGGGCATTTGCTTGGTGTGGTAGACTGAAGAGGGGCCCCCCAATGATGCCCACACCCTGATCCCCACAA------TC------TGTGGATGTCTTACCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82392055 319 + 85787240 CTGTTTATAGATGGTCAAAGG---GATATTCGGTTATGTATCTTTATG-------CTTTTTGACAAATCATGAATGCAGGAAAGAGAATCAGTTTGTGTATTCGGTCATGGACAG-ACATTTCTCAAAGCTAGAGTGTTCAGGGTGAAATTCCAAAAGGGTAGTCACAGCTAATGAAT-GTGGATGGGGCC-GTGCTCTGAAGGGAGCACCCAGACTTCATTGGGAAAATGCAAAAATACGTTCAATCTGGGCAT----TTGGtgtggtagactgaagaggggccccccaatgatgcccacaccctgatccccacaa------tc------tgtggatgtcttacctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14071444 326 - 49578535 CTGTTTGTAGGTGGTCAAAGG---GATATTCGATTATTTATCTTTATG-------CTTTTTGACAAATCCTGAACACAGAAAAATGAATC----TGTATATTCAGTCATGGACAGCATATGTCTCAAGGCTGCAGTGTTCAGGGTGAAATTCCAAAAGGGTGGTCGTACCTTATGAAT-GTGGGTATGGCTGGTGGTCTGAAGGAAACACCCAGACCTCGTTAGGAGAATTCACAAATCAGTTTAATCTGGGCATTTGCTGGGtgtggtagactgaataggggc-ccccaacgatgtctgcaccctgacccccacag------cctgtggatgtggatgtgttacctt i calJac3.chr19 C 0 C 0 s mm10.chr1 178684546 325 + 195471971 CCATTTCTAGATGGATGAAAGGCAGGTAT----TTATTTATCTTTATAGATGTCCCCTCCCCATAAACTCTGAACACAGGAAAAAGAATGTGTCTGTGTATTTGGCCACTCATAGTACATTTCTCAAGGATGTGAAATCTGGGCTGAAAGTCGAAAGGAATGGTCACATCTTATGAATGGTGGATAGGGTC-TTGGTCAGCAAGGAGTTCCCAGACTGTATCAGGAGGCTTAAACAATGCTTTAAATCTGGTCATGCATTTTGtatggttgactaaggaagggc-cctgagaggtgttcgtgcccag-----ctcag------tc------tatggttgtggaaccct i mm10.chr1 I 116 I 33 s canFam3.chr7 36257552 306 + 80974532 CTATTTATAGATGGTCAGAGG---AGTA-----CTATTTATCTTTATG-------CTTTCTGACAAACTGTGAACACAG-AAAAGGAAGTACTTTGTATACTCAGTCACGGATAGGACGTTTCTGAAGGATAT-GTGCTCAGGCTGAAATTCT--AAGGTT--TCATAACTTATGGAT-AAGGGCAGGGCC-ATGCTCTGAAGCGAACATCCAACC--CAGCAGGAAATTTCAAAAATACTCT-----------TTTATTTGGtgtggtaggctgaatacaggacccccaaagatgttcacatcctaatacctggaaaggaagcc------tgagggtctatttcctt i canFam3.chr7 C 0 C 0 a score=156779.000000 s hg38.chr1_KI270759v1_alt 69322 59 + 425601 acatggtaaaagggcc-------tcagcagatgtgattaagccaaggatcttgagatgggggatca s panTro4.chr1 224817528 59 + 228333871 acatggtaaaagggcc-------tctacagatgtgattaagccaaggatcttgagatgggggatca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226175075 59 - 229942017 acatggtaaaagggcc-------tctgcagatgtgattaagctaaggatcttgagatgggggacca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140064343 55 - 143122389 tcatagtaaaagggcc-------tctgcacatgtgattaagtt----atcttgagatgggggatca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16780288 59 - 229590362 acacagtacaagggcc-------tttgcagatgtggttaagttaaggagctggagatggggggtca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223542721 59 - 227556264 acacagtacaagggcc-------tttgcagatgtggttaagttaaggagctggagatggggggtca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16593694 59 - 220367699 ACACAGTACAAGggcc-------tttgcagatgtgattaagttaaggagcTGGAGATGGGGggtca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82392374 59 + 85787240 gcacagtacaagggcc-------tttgcagatgtgattaagttaaggagctggagatggggggtca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14071770 54 - 49578535 acacagtacaaaggcc-------tttgcaggtgtgattagg-----aatctcgagatgggggatca i calJac3.chr19 C 0 C 0 s canFam3.chr7 36257858 64 + 80974532 acatagtaaaggaattgaattgattgattgatatgattgaattgaggatttgggga--ggaaatca i canFam3.chr7 C 0 C 0 e mm10.chr1 178684871 33 + 195471971 I a score=350808.000000 s hg38.chr1_KI270759v1_alt 69381 129 + 425601 tttaatttaatt-tta--------------ttattattttttgagacggcgtctcactctgccacccaggctggagtgcaatggtgcgagcttggctcactgcaacctccacctcccaggttcaagcgattctcc-tgcctcaac s panTro4.chr1 224817587 129 + 228333871 tttaatttaatt-tta--------------ttattattttttgagacggagtctcactctgccgcccaggctggagtgcaatggtgcgagctcggctcactgcaacctccacctcccaggttcaagcgattctcc-tgcctcaac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226175134 126 - 229942017 tttaatttaatt------------------ttattattttttgagatggagtctcgctctgccacccaggctggagtgcaatggtgcgatctcggctcactgcaacctccacctcccaggttcaagcgattctcc-tgcctcaac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140064398 129 - 143122389 tttaatttaatt-taa--------------tttaatttttttgagacggagtctcactctgccacccaggctggagtgcaatggtgtgatctcggctcactgcaacctccacctctcagtttcaagcgattctcc-tgcctcaac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16780347 133 - 229590362 tttaatttaatt-taa--------tttt--ttttttttttttgagatggagtctcgctctgccacccaggctggagtgcaatggcgcgatctcggctcactgcaacttccacctcccaggttcaagcgattctcc-tgcctcagc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223542780 133 - 227556264 tttaatttaatt-taa--------tttt--ttttttttttttgagacggagtctcgctctgccacccaggctggagtgcaatggcgcgatctcggctcactgcaacttccacctcccaggttcaagcgattctcc-tgcctcagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16593753 135 - 220367699 tttaatttaatt-taa--------tttttattttttttttttgagacggagtctcgctctgccacccaggctggagtgcaatggcgcgatctcggctcactgcaacttccacctcccaggttcaagcgattctcc-tgcctcagc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82392433 141 + 85787240 tttaatttaatt-taatgtttgtttttt--ttttttttttttgagacggagtctcgctctgccacccaggctggagtgcaatggcgcgatctcggctcactgcaacttccacctcccaggttcaagcgattctcc-tgcctcagc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14071824 120 - 49578535 tttaatttaattatta--------------atattattttt-------gagtctcgctctgccaccca----ggagtacagtggcatgatctcagctcactgcaacctccacctcctggattcaagcgactctcctttcctcagc i calJac3.chr19 C 0 C 0 e mm10.chr1 178684871 33 + 195471971 I e canFam3.chr7 36257922 0 + 80974532 C a score=36548.000000 s hg38.chr1_KI270759v1_alt 69510 10 + 425601 ctcgggatta s panTro4.chr1 224817716 10 + 228333871 ctcgggatta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226175260 10 - 229942017 ctcgggatta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140064527 10 - 143122389 ctcaggatta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16780480 10 - 229590362 cttgggatta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223542913 10 - 227556264 cttgggatta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16593888 10 - 220367699 cttgggatta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82392574 10 + 85787240 cttgggatta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14071944 10 - 49578535 cttgggatta i calJac3.chr19 C 0 C 0 s canFam3.chr7 36257922 10 + 80974532 ctccggatta i canFam3.chr7 C 0 C 0 e mm10.chr1 178684871 33 + 195471971 I a score=487425.000000 s hg38.chr1_KI270759v1_alt 69520 163 + 425601 caggcatggaccaccatgtccggctaatttttgtatttttagtagagatgaggtttcaccatgttgtccaggctggtctcaaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggtatgaaccaccacatccggccaag s panTro4.chr1 224817726 163 + 228333871 caggcatggaccaccatgtccggctaatttttgtatttttagtagagatgaggtttcactatgttgtccaggctggtctcaaactcctgacctcaggtgatctgcctgcgtcagcctcccaaagtgctgggattacaggtatgaaccaccacatccggccaag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226175270 161 - 229942017 caggcatggaccaccatgtctggctaatttttgcatttttagtagagatgaggtttcaccatgttgtccaggctggtctcaaactcctgacctcaggtgatctgcctgcctcagcct--caaagtgctaggattacaggtgtgagccaccacatccggccaag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140064537 163 - 143122389 caggcatggaccaccatgtctggctaatttttgtatttttagtagagatgaggtttcaccatgttgtccaggctggtctcaaactcctgacctcagttgatctgcctgccccagcctcccaaagtgctgggattacaggcgtgaaccatcacatctggccaag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16780490 163 - 229590362 caggcatggaccaccatgtctggctaatttttgtatttttagtagagatgagatttcaccatgttgtccaggctggtctcaaactcctgagctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggcatgagtcaccacatctggccaag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223542923 163 - 227556264 caggcatggaccaccatgtctggctaatttttgtatttttagtagagatgagatttcaccatgttgtccaggctggtctcaaactcctgagctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggcatgagtcaccacatctggccaag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16593898 163 - 220367699 caggcatggaccaccatgtctggctaatttttgtatttttagtagagatgagatttcaccatgttgtccaggctggtctcaaactcctgagctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggtgtgagtcaccacatctggccaag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82392584 163 + 85787240 caggcatggaccaccatgtctggctaatttttgtatttttagtagagatgagatttcaccatgttgtccaggctggtctcaaactcctgagctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagtcaccacgtctggccaag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14071954 143 - 49578535 caggcaaggacaaccatgtcaggctaatttttgtatttttagcagagatgggatttcgccatgttggccagtctggtctcgaactcctggcctcaggtgatctgcctgcctcagcctccc--------------------gtgagccaccacgcctggccaag i calJac3.chr19 C 0 C 0 e mm10.chr1 178684871 33 + 195471971 I e canFam3.chr7 36257932 0 + 80974532 C a score=57330.000000 s hg38.chr1_KI270759v1_alt 69683 17 + 425601 gagatcattttagacta s panTro4.chr1 224817889 17 + 228333871 gagatcattttagacta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226175431 17 - 229942017 gagatcattgtagacta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140064700 17 - 143122389 gagatcattttagacta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16780653 17 - 229590362 gagatcattttagacta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223543086 17 - 227556264 gagatcattttagacta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16594061 17 - 220367699 gagatcattttagacTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82392747 17 + 85787240 gagatcattttagacta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14072097 17 - 49578535 gagatcattttagactc i calJac3.chr19 C 0 C 0 s mm10.chr1 178684904 17 + 195471971 gaggttgtctggcatta i mm10.chr1 I 33 C 0 e canFam3.chr7 36257932 0 + 80974532 C a score=835362.000000 s hg38.chr1_KI270759v1_alt 69700 256 + 425601 tctgggtggactcaatgtaattacaaggatcctta-aagaggaaggcaggaggatcagaaccagaga-gaggaggtggaaggaca---------------------gaagcagaggtcagagaggagagagatacaaatctgttggctttgatgatggaagaagg------------------------aacctctagaagctgaggacggcaagg-gtgtgattctcccctagagcctccagaagaagccagccctgcagggccatttttgagttctggtctccagaacttta-------------agagggtaag s panTro4.chr1 224817906 256 + 228333871 tctgggtggactcaatgtaattacaaggatcctta-aagaggaaggcaggaggatcagaaccagaga-gaggaggtggaaggaca---------------------gaagcagaggtcagagaggagagagatacaaatctgttggctttgatgatggaagaagg------------------------aacctctagaagctggggacggcaagg-gtctgattctcccctagagcctccagaagaagccagccctgcagggccatttttgagttctggtctccagaacttta-------------agagggtaag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226175448 256 - 229942017 tctgggtggacagaatgtaattacaaggatcctta-aagagggagccaggaggatcagaaccagaga-gaggaggtggaaggaca---------------------gaagcagaggtcagagaggagagagatacaaatctgttggctttgatgatggaagaagg------------------------aacctctagaagctggggacggcaagg-gtctgattctcccctagagcctccagaagaagccagccctgcagggccatttttgagttctggtctccagaacttta-------------agagggtaag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140064717 227 - 143122389 tctgggcggactcaatgtaattacaagggtcctta-aagagggaggcagg-----------------------------aggaca---------------------gaagcagaggtcagagaggagagagatgcaaatctgttgcctttg-tgatggaagaagg------------------------aacctctagaagctggggacggcaagg-gtctgattctcccttagagcctccagaagaagccagccctgcagggccatttttgagttctggtctccagaacttga-------------agagggtaag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16780670 251 - 229590362 tctgggtggactcaatgtaattacaaagatcctta-aagagggaggcaggaggatcagaaccagaga-gaggagatggaaggata---------------------gaagcagaggtcagaggggagagagattcaaatctgttggctttgatgatggaagaagg------------------------agcctctagaagctgggtaaggcaagg-gtctgattctcccctagagcctccagaagaa-----ccctgcagggccatttttgagttccggtctccagaacttta-------------agaggatacg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223543103 251 - 227556264 tctgggtggactcaatgtaattacaaagatcctta-aagagggaggcaggaggatcagaaccagaga-gaggagatggaaggata---------------------gaagcagaggtcagaggggagagagattcaaatctgttggctttgatgatggaagaagg------------------------agcctctagaagctgggtaaggcaagg-gtctgattctcccctagagcctccagaagaa-----ccctgcagggccatttttgagttccggtctccagaacttta-------------agaggatacg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16594078 251 - 220367699 TCTGGGTGGACTCAATGTAATTACAAAGATCCtta-aagagggaggcaggaggatcagaaccagaga-gaggagatggaaggaca---------------------gaagcagaggtcagaggggagagagaTTCAAATCTGTTGGCTTTGATGATGGAAGAAgg------------------------agcctctagaagctgggtAAGGCAAGG-GTctgattctcccctagagcctccagaagaa-----cCCTGCAGGGCCATTTTTGAGTTCCGGTCTCCAGAACTTTA-------------GGAGGATACG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82392764 251 + 85787240 tctgggcggactcaatgtaattacaaagatcctta-aagagggaggtaggaggatcagaaccagaga-gaggagatggaaggaca---------------------gaagcagaggtcagaggggagaggggttcaaatctgttggctttgatggtggaggaagg------------------------agcctctagaagctgggtacggcaagg-gtctgattctcccctagagcctccagaagaa-----ccctgcatggccatttttgagttccggtctccagaactttg-------------agaggatacg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14072114 255 - 49578535 tctgggtggacccagtgtaattacaaggatcctga-aagagggaagcaggaggatcagaaccaggga-gaggaggtggggagaca---------------------gaagcagagggcagagacgagagagacaccaatctgctggcttccatgatggaagaaga------------------------agcctctaaaaactgggggcagc-agt-gtctgattctcccctcgagcctctagaaggagccagccctgcagggccatttttgacttctggtctccagaacttta-------------agacagtaaa i calJac3.chr19 C 0 I 1036 s mm10.chr1 178684921 236 + 195471971 tctgagtggactcgaaggaatcacacatgtcctggtaagagtgaggcaggaggataagaaccagagaggaagagctgggaagatgccgtgctcctagccttggcctgaagaaggggccacagggcaaggag----------------------------gacagg------------------------catctgcagaagctgg--aaggtgaggaggcaggttttctctcagagcctccaaaggaa-ccagttcttca-ggttgcctcagact-----tctccagaccatta-------------aga------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36257932 290 + 80974532 tctggatgggtccaatgttatggcaaaggtccttgtaagaaggaggcaggaagataagagtca-----gaggtaatttagggaca---------------------gaagcagaggtcagagaggaaagaagatccca-ctgtcggctttggaggtggaggaaggggctgcaagccacagagggaagccagcctctaataggtagaaaagtcaaggaatcacactctctgctggagcttccagaaggaaccagctctacagacccattgtagatgtctgacctccagaactttagagcatagaaaagaaagaataaa i canFam3.chr7 C 0 C 0 a score=611943.000000 s hg38.chr1_KI270759v1_alt 69956 181 + 425601 tttttgttgtttgaagctgctaaatgtgtgctattttgcttcagcagcaataggaagctattacaACTGGTGAGCCTTCT----GTTAACTGAAAAGCTTGGTAAGGAG--AAGCGGGATGGGGTCTACAGACCAAGGAGTCCCTGCAGAAACCTGCAGGACAG-CAAGAACGTGGGCTTTTCATCTC s panTro4.chr1 224818162 181 + 228333871 tttatgttgtttgaagctgctaaatgtgtgctattttgcttcagcagcaatgggaagctattacaACTGGTGAGCTTTCC----GTTAACTGAAAAGCTTGGTAAGGAG--AAGCGGGATGGGGTCTACAGACCAAGGAGTCCCTGCAGAAACCTGCAGGACAG-CAAGAACGTGGGCTTTTCATCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226175704 181 - 229942017 tttatcttgtttgaagctgctaaatgtgtgctattttgcttcagcagcaataggaagctattacaCCTGGTGAGCCTTCG----GTTAACTGAAAAGCTTGGTAAGGAG--AAGTGGGATGGGGTCTACAGACCAAGGAGTCCCTGCGGAAACATGCAGGACAG-CAAGAACGTGGGCTTTTCATCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140064944 182 - 143122389 tttatgttgtttgaagctgctaaatgtgtgctattttgcttcagcagcaacaggaagctattacaCCTGGTGAGCCTTCC----GTTAACTGAAAAGCTTGGTAAGGAG--AAGCGGGATGGGGTCTGCAGACCAAGGAGTCCCTGCAGAAACCTGCAGGACAGCCAAGAATGCGGGCTTCTCATCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16780921 182 - 229590362 tttatgttgtttgaagctgctcaatgtgtgctattttgcttcagcagcaataggaagctattacaCCTGGTGAGCCTTTG----GCTAACCGAAAAGCTTGGTAAGGAG--AAGGGGGATGGGGTCTACAGACCAAGGAGTCCCTGCAGAAACCTGCAGGATAGCCAAGAACGTGGGCTTTGCATCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223543354 182 - 227556264 tttatgttgtttgaagctgctcaatgtgtgctattttgcttcagcagcaataggaagctattacaCCTGGTGAGCCTTTG----GCTAACCGAAAAGCTTGGTAAGGAG--AAGGGGGATGGGGTTTACAGACCAAGGAGTCCCTGCAGAAACCTGCAGGACAGCCAAGAACGTGGGCTTTGCATCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16594329 182 - 220367699 TTTATGTTGTTTGAAGCTGCTCAATGTGTGCTATTTTGCTTCAGCAGCAATAGGAGGCTATTACACCTGGTGAGCCTTTG----GCTAACCGAAAAGCTTGGTAAGGAG--AAGGGGGATGGGGTCTACAGACCAAGGAGTCCCTGCAGAAACCTGCAGGACAGCCAAGAACGTGGGCTCTGCATCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82393015 182 + 85787240 tttatgttgtttgaagctgctcaatgtgtgctattttgcttcagcagcaataggaagctattataCCTGGTGAGCCTTTG----GCTAACCGAAAAGCTTGGTAAGGAG--AAGGGGGATGGGGTCTACAGACCAAGGAGTCCCTGCAGAAACCTGCAGGACAGCCAAGAACGTGGGCTTTTCATCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14073405 184 - 49578535 tttatgttgttttaaactgctaaattggtgatattttgcttcagcagcaacgggaagctgttacaCCTGGTAAGCCTTTGGTTAGTTAACTGGAAAGCCTGGTAAGGAG--AAGCGGGATGGGGCCTACAGA-CAAGGGGCCCCTGCAGAAACCTGCA-GACGGCCAAGAACACCGGCTTTTCttttc i calJac3.chr19 I 1036 I 172 s mm10.chr1 178685157 127 + 195471971 -----------------taatagatcagtgccggtttGTTCCAGCGGCCTTAAGGA----------------AGCATTTG----G-TAACTGACAA-CCTGATAAGGAC--AAGTGAGAGGAGGTTTGCAGA--------------------TGTGAGAGATGATGAAGCATACGGGCTTTCCATCCC i mm10.chr1 C 0 C 0 s canFam3.chr7 36258222 169 + 80974532 tttgtgttgcttggagctgctaaatttgtggtaatttgcttcagctgcagttggaaacaaatacaCCCAGTAAGTGTTTG----G-TAGCTGAAAAGTGTGGTTAGAAGCTAAGTGAGA--------------CAAGGAGCTGCTATAGAATCCTGCAGTAGGGCCAAGGACATGAGCTTCTCATCCC i canFam3.chr7 C 0 C 0 a score=4095.000000 s hg38.chr1_KI270759v1_alt 70137 1 + 425601 A s panTro4.chr1 224818343 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226175885 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140065126 1 - 143122389 A i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16781103 1 - 229590362 A i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223543536 1 - 227556264 A i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16594511 1 - 220367699 A i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82393197 1 + 85787240 A i chlSab2.chr25 C 0 C 0 s mm10.chr1 178685284 1 + 195471971 A i mm10.chr1 C 0 C 0 s canFam3.chr7 36258391 1 + 80974532 A i canFam3.chr7 C 0 C 0 e calJac3.chr19 14073589 172 - 49578535 I a score=2346584.000000 s hg38.chr1_KI270759v1_alt 70138 716 + 425601 CACAACAAACCCCGTTACCCTGCGGATCGGCCGGTCCATGCACAAGTCAGATTCTTTCATCTGGGTGCCACCACAGAATGAGAGGTTACTCATACTGCACCGCTGGTTTGCGATTGTCTCAGATTTCCCTATTGTTATAGAATCATAATAAGTAG----CACACCACAGCGACTCTCCATTGGTAGCTAGTCATTACAATTATGTAAG--TCT--CATACTGTTGAAACTGCAGAAATCATTCCAAG-CTGGGGGTGGGAGGGATGGAAGGAACGGGAGGGGAAGG---AGAGACTTCACTGAATTTCATGTAGAAGGAAGTTCATCTTTGCTAGA-GGCCTTTTGATCTGATAGAAGGAGATCTCACAGAACTGCCCCAGCAA----------TAA-TTCTT-ACCTCATCTGGTAAAGATCTTCATAA-T-GCATGCACTTGAATGCACTTTGGACGTTGTAGAGCAGCATGTGAGTGTTTGCTGGTATCACGTTT-TATCTGGTAGGCAGG---ACACAGTCAATGGGGATTCCGGAGCAGGGGAATGGGAAGATTTCTTTGCCTGAAAGcaggaattctcaattt-tggcttcacactagaattacttgggagatt-----------aaaaaaaaaaa-------tcctaatgcctaagccacaccccaggc--------gaattaaatgagaatatctgcaggtgggacccaggccttggtTTGAACT-TGGCCAAGTCCAAGAACCACAGTGTTAAGGAAGAATTTATC s panTro4.chr1 224818344 723 + 228333871 CACAACAAACCCCGTTACCCTGCGGATCGGCCGGTCCATGCACAAGTCAGATTCTTTCATCTGGGTGCCACCACAGAATGAGAGGTTACTCATACTGCACCGCTGGTTTGCGATTGTCTCAGATTTCCCTATTGTTATAGAATCATAATAAGTAG----CACACCACAGCCACTCCCCATTGGTAGCTAGTCATTACAATTACGTAAG--TCT--CATACTGTTGAAACTGCAGAAATCATTCCAAG-CTGGGGGTGGGAGGGATGGAAGGAACGGGAGGGGAAGG---AGAGACTTCACTGAATTTCATGTAGAAGGAAGTTCATCTTTGCTAGA-GGCCTTTTGATCTGATAGAAGGAGATCTCACAGAACTGCCCCAGCAA----------TAA-TTCTT-ACCTCATCTGGTAAAGATCTTCATAA-T-GCATGCACTTGAATGCACTTTGGACATTGTAGAGCAGCATGTGAGTGTTTGCTGGTATCACGTTT-TATCTGGTAGGCAGG---ACACAGTCAATGGGGATTCCGGAGCAGGGGAATGGGAAGATTTCTTTGCCTGAAAGcagaaattctcaattt-tggcttcacactagaattacttgggagatt-----------aaaaaaaaaaaaaaaaaatcctaatgcctaagccacgccccaggc--------gaattaaatgagaatatctgcaggtgggacccaggcCTTGCTTTGAACT-TGGCCAGGTCCAAGAACCACAGTGTTAAGGAAGAATTTATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226175886 714 - 229942017 CACAACAAACCCCATTACCCTGCGGATCGGCCGGTCCATGCACAAGTCAGATTCTTTCATCTGGATGCCACCCCGGAATGAGAGGTTACTCATACTGCACCGCTGATTTGCGATTGTCTCAGATTTCCCTATTGTTATAGAATCATAATAACAAG----TACACCACAGCCACTCTCCATTGGTAGCTAGTCATTACACTTACGTAAG--TCT--CATACTGTTGAAACTGCAGAAATCATTCCAAG-TT-GGGGTGGGAGGGATGGAAGGAACGGGAGGGGAAGG---AGAGACTTCAGTGAATTTCGTGTAGAAGGAAGTTCATCTTTGCTAGA-GGCCTTTTGATCTGATAGAAGGAGATCTCACAGAACTGCCCCAGCAA----------TTA-TTCTT-ACCTCATCTGGTAAAAATCTTCATAA-A-GCATGCACTTGAATGCACTTTGGACGTTGTAGAGCAGCACGTACGTGTTTGCTGGCATCACGTTT-TATCTGGTAGGCAGG---ACACAGTCAATGGGGATTTTGGAGCAGGGGAATGGGAAGATTTCTTTGCCTGAAAGcaggaattctcaattt-tggcttcacactagaattacttgggagatt-----------aaaaaaaaaa--------ctctaatgcctgagccccaccccagac--------aaattaaatgagaatatctgcaggtgggacccaggccttggtTTGAACT-TGGCCAAGGCCAAGAACCACAGTGTCAAGAAAGAATTGATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140065127 722 - 143122389 CACGACAAACCCCATTACCCTGCGGATCGGCTGGTCCATGCACAAGTCATGTTCTTTCATCTGGGTGCCACCACAGAATGAGAGGTCACTCACACCGCACCGC-GGTTTCCGATTGTCTCAGATTTCCCTATTGTTATAGAATCATCATAACAAG----CACACCACAGCCACTCTCCATTGGTAGCTAGTAATTACAGTTACACAAG--TCT--CATACTGTTGAAACTGCAGACATCATTCCAAG-CTGGGGGTGGGAGGGATGGAAGGAATGGGAGGGGAAGG---AGAGACGTCACTGAATTTCGTGTAGAAGGAAGTTCATCTTTGCTAGA-GGCCTTTTGATCTGTTAGAAGGAGGTTTCGCAGAACTGCCCCAGCGA----------TAA-TTCTT-CCCTCATCTGGTAAAAATCTTCATAA-T-GTGTGCACTTGAATGCACTTCGGACGTCGTAGAGCAGCATGGAAGTGTTTGCTGGTATCACATTT-TATCTGGTAGGCAGG---ACACAGTCAATGGGGATTTCGGAGCAGGGGAACGGGAAGATTTCTTTGCCTGAAAGcaggaattctcagctt-tggcttcacactagaattacttgggagatt-----------aaaaaaaaaaaaaaaaaatcctaatgcctaagccacaccccagac--------gaattaaatgagaatatctgcaggtgggacccaggccttggtTTGAACT-TGGCCATGGCCAAGAACCACAGTGTTAATAAAGAATTTATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16781104 711 - 229590362 CACAACAAACCCCATTACCCTGCGGGTCGGCCGGCCCATGCACAAGTCAGATTCTTTCATTTGGGTGCCTCCGCAGAATGAGAGGTTACTCATACTGCACCGCCGGTTTTCGATTATCTCAGATTTCCCTATTGTTGTAGACTCATAATAACCAG----CACACCACAGCCACTCTCCATTGGTAGCTAGTAATTACAGTTACATAAG--GCT--CATACTGTTGAAACTGCGGAAATCATTCCAAG-CTGGGGGTGGGA-GGATGGAAGGAACCGGAGGGGAAG-----GAGACTTCACTGAATTTCGTGTAGAAGGAA-TTCATCTTGGCTAGAGGGCCTTTTGATCTGATAGAAGGAGATTTCACAGAACTGCCCCGGCAG----------TAA-TTCTT-CCCTCATCTGGTAAAAATCTTCATAA-T-GCCTGCACTTGGGTGCACTTTGGAAGTTGTAGAGCAGCGTGTAAGTGTGTGCTGGTATCGCATTT-TATCTGGTAGGCAGA---AGACAGTCAATGGGGATTTCGGAGC------AGGGGAAGATTTCTTTGCCTGAAAGcaggaattctcaattt-tggcttcacactagaattacttgggagatt-------aaaaaaaaaaaaaaa-------tcctaatgcctaagccacaccccagac--------aaattaaatgagagtatctgcaggtgggaccgaggccttggtTTGAACT-TGGCCAAGGCCAAGAACCACAGCGTTAAGAAAGAATTTATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223543537 714 - 227556264 CACAACAAACCCCATTACCCTGCGGGTCGGCCGGCCCATGCACAAGTCAGATTCTTTCATTTGGGTGCCTCCGCAGAATGAGAGGTTACTCATACTGCACCGCCGGTTTTCGATTATCTCAGATTTCCCTATTGTTGTAGAATCATAATAACCAG----CACACCACAGCCACTCTCCATTGGTAGCTAGTAATTACAGTTACATAAG--GCT--CATACTGTTGAAACTGCGGAAATCATTCCAAG-CTGGGGGTGGGA-GGATGGAAGGAACCGGAGGGGAAG-----GAGACTTCACTGAATTTCGTGTAGAAGGAA-TTCATCTTGGCTAGAGGGCCTTTTGATCTGATAGAAGGAGATTTCACAGAACTGCCCCGGCAG----------TAA-TTCTT-CCCTCATCTGGTAAAAATCTTCATAA-T-GCCTGCACTTGGGTGCACTTTGGAAGTTGTAGAGCAGCGTGTAAGTGTGTGCTGGTATCGCATTT-TATCTGGTAGGCAGA---AGTCAGTCAATGGGGATTTCGGAGCAGGGGAAGGGGAAGATTTCTTTGCCTGAAAGcaggaattctcaattt-tggcttcacactagaattacttgggagatt----------aaaaaaaaaaaa-------tcctaatgcctaagccacaccccagac--------gaattaaatgagagtatctgcaggtgggaccgaggccttggtTTGAACT-TGGCCAAGGCCAAGAACCACAGCGTTAAGAAAGAATTTATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16594512 714 - 220367699 CACAACAAACCCCTTTACCCTGTGGGTCGGCCGGTCCATGCACAAGTCAGATTCTTTCATTTGGGTGCCTCCACAGAATGAGAGGTTACTCATACTGCACCGCCGGTTTTCGATTGTCTCAGATTTCCCTATTGTTGTAGAATCATAATAACCAG----CACACCACAGCCACTCTCCATTGGTAGCTAGTAATTACAGTTACATAAG--GCT--CATACTGTTGAAACTGCGGAAATCATTCcaag-ctgggggtgggaggggtggaAGGAACCGGAGGGGAAG-----GAGACTTCACTGCATTTCGTGTAGAAGGAA-TTCATCTTGGCTAGAGGGCCTTTTGATCTGATAGAAGGAGATTTCACAGAACTGCCCCGGCAG----------TAA-TTCTT-CCCTCATCTGGTAAAAATCTTCATAA-T-GCATGCACTTGGGTGCACTTTGGAAGTTGTAGAGCAGCCTGTAAGTGTGTGCTGGTATCACATTT-TATCTGGTAGGCAGA---AGACAGTCAATGGGGATTTCGGAGCAGCGGAAGGGGAAGATTTCTTTGCCTGAAAGCAGGAATTCTCAATTT-TGGCTTCACACTAGAATTACttgggagatt-----------aaaaaaaaaaa-------tcctaatgccTAAGCCACACCCCAGAC--------GAATTAAATGAGAATATCTGCAGGTGGGACCCAGGCCTTGGTTTGAACT-TGGCCAAGGCCAAGAACCACAGCGTTAAGAAAGAATTTATC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82393198 723 + 85787240 CACAACAGACCCCATTACCCTGTGGATTGGCCGGTCCGTGCACAAGTCAGATTCTTTCATTTGGGTGCCTCCACAGAATGAGAGGTTACTCATACTGCACCGCTGGTTTTCGATTATCTCAGATTTCCCTATTGTTGTAGAATCATAATAACCAG----CACACCACAGCCACTCTCTATTGGTAGCTAGTAATTACAGTTACGTAAG--TCT--CATACTGTTGAAACTGCAGAAATCATTCCAAG-CTGGGGGTGGGA-GGATGGAAGGAACCGGAGGGGAAG-----GAGACTTCACTGAATTGCGTGTAGAAGGAAGTTCATCTTGGCTAGAGGGCCTTTTGATCTGATAGAAGGAGATTTCACAGAACTGCCCCGGCAG----------TAA-TTCTT-CCCTCATCTGGTAAAAATCTTCATAA-T-GCATGCACTTGGATGCACTTTGGAAGTTGTAGAGCAGCGTGTAAGTGTGTGCTGGTATCGCATTT-TATCTGGTAGGCAGA---AGAGAGTCAATGGGGATTTCGGAGCAGGGGAAGGGGAAGGTTTCTTTGCCTGAAAGcaggaattctcaattt-tggcttcacactagaattacttgggagattt--aaaaaaaaaaagaaaaaaa-------tcctaatgcctaagccacaccccagat--------gaattaaatgagaatatctgcaggtgggacccaggccttggtTTGAACT-TGGCCAAGGTCAAGAACTACAGCGTTAAGAAAGAATTTATC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14073761 723 - 49578535 CACAGCAAACTCCGTTACCCTGCGGATGGGCCGCTCCAGGCACAAGTCAG-TCATTTCATTTGGGTGCCTTCACAGAATGAGCGGTCACTCATACTGCACCGCTGATTTTCCATTGTTGCAGATTTCCCTATTGCTATAGAATCATCATAACGAG----CGCACCACAGCCACTGTCCATTGATAGCTAGCAATTACAACTCCGTACG--CCT--CATACTGGTGAAACTGCAGAAATGATTCCAAG-CC-GGGGTGGGAGGGATGGAAGGAATGGGAGGGGCAGGAGAAGAAACCTCACTGAATTCCATGTAGGAAGAAGTTCATGTTCGCAAGAGGGCCTTTCGATCTGATAGAAAGAAGTTT-ACAGAACTGCCCTGGCAGTGATTCTACCTGA-TTCTT-ACCTCATCTGCTAAAAATCTTCATGG-T-ATATCCAGTTGAATGCACTTCGAAAGTTGTAG-GCAGAATGTGAGTGTTTTTTAGTATTGCTTTT-TACCTGGGAGGCAGA---AGGCAGTCAGTGGGGATTTCGAAGCAGGGGAATGGGAAGGTTTCTTTGCCTGAAAGcaggaatcctccattt-tggctgcacactagaattacctgggagatt-----------aaaaaataaa--------tcctaatgcctgaattacaccccagat--------gagttaaatgagaatgtcttcaggtgggacccaggcgttggtTTCAACT---GCCAAGACCAAGAACTACAGCATTAAGAAAGAATTTATC i calJac3.chr19 I 172 I 315 s mm10.chr1 178685285 676 + 195471971 CACCAGCCACTACCTCACCCCCTGGGTCAGC-AGCGCACCAGCAAGTGGGCTCATTTCATTTGGCTGCCTCCACAGAATAAGAGGCGGCTCATGCTGCCCCATTGCTTTCCAGTTGTCTCAAATTCCCCTATTGTTACAGAGTCATAGTAACAGG----CGAGCCACAGTCGCTCTCCACTGGCATCCAGGGATGACCATTGTGTAAGTCTCT--CAGAGTGTTGAAACTGCAGAAGCCATTCCAGG-CTGGGGGTGG-------------------------------AGAGCCTTAGCTGG--CACACAGGGGTGGGTGTTTCTCTTTTCTATCAGGCCTTTGGAACCAAAAGAACAGGGTCTCACAGGACTGCTTCAGAAA----------GGATTTCTC-ACCTTTTCTGGT----ATCTTGAGGATT-AAATGTATTTGAAAGACCTTTGGGAATTGTAGACCCAAACATAAGTATTGGCTCACATCAGTTTT-TAT-TAGTAAGTTGA---AGACAGGCCCTGGAGATGT-AAAATAGAGAAATGGACTGTTTGCTT--Ctttcaaagtggagttttcaacttctgactacacactagaatcccctgggagggg-----------ttaaaagaaat-------tctcaaagtctaggtcacaccctggtc--------caacaaaatgagaatgtctgaggatgagacccaggccctgctttgaattgttgacaaggcc--------tAGCCTCAAGGAATAATTCATC i mm10.chr1 C 0 C 0 s canFam3.chr7 36258392 685 + 80974532 CACAACAA----TGTTACCCCGTGGGTCAGATAGTACATTAGCATGTCTGATTGTTTCATTTGGGCACCTCCGCAAAATGAGT--TTACTCCTACCGCATGGTTGGCTTTCAGGGGTCTCTGATTCCCCTATTGTTGGAG-CTCATGATAACAAGCACACACACCACAGAGACTGGCCAGGGGCCGCT-GTGATCACCACCATGTGGG--TCTTGCATGCTATTAGAGCTGCAGCAAACATCCCAAGCCTGGGGGTGGAA-----------------------------AGGG---------------GTGCGGGAGGGGGCTCATCTTCCCTACG-GGGCCTATGGCCAGGTAACTCGGGGTA--ACAGGACCGC-CCAGTCG----------CAA-TTCTCAACCTCACGCAGT----GTTTTGAGAA-TCAGATGCTTTAAAAAGCACTTGGAAAATCGTAG-GCA----GGAAGTGTTGGTTGTTATCCTCTTGATGTTTGGTAGGCAAAGGCAGACAGCCATTGGAGCTTTTGGGGCAGGGGAGGGAGAAAGTTTCCTTGCTGGACGGTGGGAATGTTTACcct-tggccacacattaggatcatttgagaggtattaaaaaaaaaaaaaaaaaaaa-------caccaatgcctgagccacacccctgaccagaatcagactggaatcagaaaatctgggattgggccctaggcCTAAATTTGAACT---GCCAGAGTCAAGCATCACAGCTGGAAAGAGCAGTTAATC i canFam3.chr7 C 0 C 0 a score=28555.000000 s hg38.chr1_KI270759v1_alt 70854 12 + 425601 TGGCACTGGCGT s panTro4.chr1 224819067 12 + 228333871 TGGCACTGGCGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226176600 12 - 229942017 TGGCACTGGCGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140065849 12 - 143122389 TGGTGCTGGCGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16781815 12 - 229590362 TGGCGCTGGCAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223544251 12 - 227556264 TGGCGCTGGCAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16595226 12 - 220367699 TGGCGCTGGCAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82393921 12 + 85787240 TGGCGCTGACAC i chlSab2.chr25 C 0 C 0 s mm10.chr1 178685961 12 + 195471971 TGTCACTGGCCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36259077 9 + 80974532 TGGCTGTGG--- i canFam3.chr7 C 0 C 0 e calJac3.chr19 14074484 315 - 49578535 I a score=14535.000000 s hg38.chr1_KI270759v1_alt 70866 4 + 425601 AATA s panTro4.chr1 224819079 4 + 228333871 AATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226176612 4 - 229942017 AATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140065861 4 - 143122389 AATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16781827 4 - 229590362 AATA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223544263 4 - 227556264 AATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16595238 4 - 220367699 AATA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82393933 4 + 85787240 AATA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14074799 4 - 49578535 AATA i calJac3.chr19 I 315 C 0 s mm10.chr1 178685973 4 + 195471971 CATA i mm10.chr1 C 0 I 827 e canFam3.chr7 36259086 0 + 80974532 C a score=302623.000000 s hg38.chr1_KI270759v1_alt 70870 103 + 425601 GGTACAGGGAAGAGAACAATGAATGTGTGTGGATAGATGAGTGATAGGCTGAGAGACAGgtgtttgtttcttatggctgccatcacaatttactactaactat s panTro4.chr1 224819083 102 + 228333871 GCTAC-GGGAAGAGAACAATGAATGTGTGTGGATAGATGAGTGATGGGCTGAGAGACAGgtgtttgtttctcatggctgccatcacaatttactactaactgt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226176616 101 - 229942017 GGTACAGGGAAGAGAACAATGAATGTATGTGGATAGGTGAGTGATAGGCTGAGAGACAGgtgtttgtttcttatggctgccatcacaatttactactaac--t i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140065865 102 - 143122389 GGTGCAGGGAAGAGAACAATGAATGTATGTGGGTAGATGAGTGA-AGGCTGAGAGACAGGTGCTTgtttcttacggctgccatcacaatttactactaactat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16781831 103 - 229590362 GGTACAGGGAAGAGGACAATGAATGTATGTGGATAGATGAGTGAGAGGCTGAGAGACAGGTGTTTGTTTCTTACGGCTGCCATCACAACTTACTACTAACTAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223544267 103 - 227556264 GGTACAGGGAAGAGGACAATGAATGTATGTGGATAGATGAGTGAGAGGCTGAGAGACAGGTGTTTGTTTCTTACGGCTGCCCTCACAACTTACTACTAACTAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16595242 103 - 220367699 GGTACAGGGAAGAGGACAATGAATGTATGTGGATAGATGAGTGATAGGCTGAGGGACAGGTGTTTGTTTCTTACGGCTGCCATCACAACTTACTACTAactat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82393937 103 + 85787240 GGTACAGGGAAGAGGACAATGAATGTATGTGGATAGATGAGTGATAGGCTGAGAGACAGGTGTTTGTTTCTTACGGCTGCCATCACAATTTACTACTAACTAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14074803 97 - 49578535 AGTAGAGGGAAGAGAACAGTGAAGGTATGTGGATAGATAAGTGATAGGCCGATAGA----TGTTAGTTTCTTAGGACTGACA--ACAATTTACTACTAACTAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36259086 85 + 80974532 -------------GAACAATGAAAGT-----GGTAGGCGGATGGTAGTTTGATAATAGtgtatcagtttcctaaagccgccagaacaaatgaccacaaacaag i canFam3.chr7 C 0 C 0 e mm10.chr1 178685977 827 + 195471971 I a score=526998.000000 s hg38.chr1_KI270759v1_alt 70973 204 + 425601 gtggctttatttttt-attttttat--ttattttttttt-gagactgagtcttgctctatcacccaggctggagtgcagcggcacaatcttggctcactccaacctccgcctcctaggttgaagtgattctcctgcctcagcctcctgagtagctgggattacaggtgcccaccaccacacccagctaatttttgtacttttagtaga s panTro4.chr1 224819185 206 + 228333871 gtggctttattttttcattatttat--ttattttttttttgagactgagtcttgctctatcgcccaggctggagtgcagtggcacaatcttggctcactgcaacctccgcctcccaggttgaagtgattctcctgcctcagcctcctgagtagctgggattacaggtgcccaccaccacacccagctaatttttgtacttttagtaga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226176717 205 - 229942017 gtggctttattttttgattttttat--ttattatttttt-gagactgagccttgctgtatcgcccaggctggagtgaagtggcacaatctcggctcactgcaacctctgcctcccaggttgaagtgattctcctgcctcagcctcctgagtagctgggattacagatgtccaccaccacacccagctaatttttgtacttttagtaga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140065967 202 - 143122389 gtggctttattttttcatttattattattattttttttttgaggctgagtcttgctctattgcccaggctggagtgtggtggcacaatctcggctcactgcaacctccgcctcccag------gtgattctcctacctcagactcctgagtagctggggttacaggtatgcaccaccacacccagctaatttttgtactgttagtaga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16781934 191 - 229590362 GTGGCtttattttt-------------ttatttttt----gaaactgagtcctgctctgtcgcccaagctggagtgcagtggcgcagtcttggctcactgcaacctccgcctcctaggttgaagtgattctcctgcctcagactcctgagtagctgggtttacaggtatgtgccaccacacccagctaatttttgtacttttagtaga i rheMac3.chr1 C 0 I 7 s macFas5.chr1 223544370 191 - 227556264 GTGGCtttattttt-------------ttatttttt----gaaactgagtcctgctctgtcgcccaagctggagtgcagtggcgcagtcttggctcactgcaacctccgcctcctaggttgaagtgattctcctgcctcagactcctgagtagctgggtttacaggtatgtgccaccacacccagctaatttttgtacttttagtaga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16595345 191 - 220367699 gtggctttattttt-------------ttatttttt----gaaactgagtcctgctctgtcgcccaagctggagtgcagtggcgcagtcttggctcactgcaacctccgcctcctaggttgaagtgattctcctgcctcagactcctgagtagctgggtttacaggtgtgtgccaccacacccagctaatttttgtacttttagtaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82394040 191 + 85787240 GTGGCTTTATGttt-------------ttatttttt----gaaactgagtcttgctctgtcgcccaagctggagtgcagtggcgcagtcttggctcactgcaacctccgcctcctaggttgaagtgattctcctgcctcagactcctgagtagctgggattacaggtgcgtgccaccacacccagctaatttttgtacttttagtaga i chlSab2.chr25 C 0 I 7 s calJac3.chr19 14074900 183 - 49578535 GTGGCtttat-----------------ttattt-------gagacagagtcttgctctattgcccaggctggagcgcagtggcgtgatctcggctcactgtaacctccgcctcc-aagttcaagcgattctcctgcctcagcctctggagtagctgggcttatagatgtgcaccaccacgcccagctagtttttgtactgttagtaga i calJac3.chr19 C 0 C 0 e mm10.chr1 178685977 827 + 195471971 I e canFam3.chr7 36259171 0 + 80974532 C a score=2692.000000 s hg38.chr1_KI270759v1_alt 71177 2 + 425601 ga s panTro4.chr1 224819391 2 + 228333871 ga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226176922 2 - 229942017 ga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140066169 2 - 143122389 ga i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223544561 2 - 227556264 aa i macFas5.chr1 C 0 I 5 s papAnu2.chr1 16595536 2 - 220367699 aa i papAnu2.chr1 C 0 I 5 s calJac3.chr19 14075083 2 - 49578535 ga i calJac3.chr19 C 0 C 0 e mm10.chr1 178685977 827 + 195471971 I e canFam3.chr7 36259171 0 + 80974532 C e rheMac3.chr1 16782125 7 - 229590362 I e chlSab2.chr25 82394231 7 + 85787240 I a score=251093.000000 s hg38.chr1_KI270759v1_alt 71179 340 + 425601 cagggtttcaccatgttggc---caggatggtctcgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgtgcctggctcactgc---------------------------------------------------------------------------------------aacctctgcctcctgggttcaagtgatgctcatgcctcagcctcctgagtagctgagattacaggcacgcatcaccacgcctggctaatttttgtacttttagtagagacagggtttcaccatgttggtcaggctggtcttgaactcctgacctcaggtgacccacccgcctcagcctcccaaagtgctggaattacaggcgtgagccaccgcccccagcct s panTro4.chr1 224819393 333 + 228333871 cagggtttcaccatgttggc---caggatggtctcgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacacacgtgagccactgtgcctggctcactgc---------------------------------------------------------------------------------------aaccgctgcctcctgggttcaagtgatgctcgtgcctcagcctcctgagtagctgagattacaggcacgcatcaccacgcctggctaattttt-------tagtagagacagggtttcaccatgttggtcaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcccaaagtgctggaattacaggcgtgagccaccgcccccagcct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226176924 338 - 229942017 cagggtttcaccatgttggc---caggctggtctcgaactcctgacctcaggtgatctgcccacctcagcctcccaaagtgctgggattacaggcatgagccactgtgcctggcccactgc---------------------------------------------------------------------------------------aacctctgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacacgccaccacgcctggctaatttttgtatttttagtagagacagggtttcaccatgatggtcaggctggtctcgaacttctgacctcaggtgatcca-ccgcctcagcctccc-aagtgctggaattacaggcgtgagccaccgcgcccagcct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140066171 340 - 143122389 cagggtttcaccatgttggc---caggatggtctcaaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgtgcctggctcgctgc---------------------------------------------------------------------------------------aacctctgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtacatgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgatggtcaggctggtctcgaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctggaattacaggcgtgagccactgtgcccagcct i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14075085 426 - 49578535 cagggttttaccatgttggccagcaggctggtctcaaactgctgacctcaggtgat----ccttcttggtctccggaagtgctggaattgtaggcatgagccacggcgcctggccCGCTGCAATCTCCAGGCTGAACTTCCACTTTCCTATGGGTTAAAGAAAAGAGCCAGGGAGTATCTGTGCTCCATAGCGAGCTGGCCAAGGGGGaacctcggcctcccaggttcaaatgaatcttctgccttatcctcctcagtagctgggattacaggcacctgccaccatgcccagctaatttttgtatttttagtagagacggggtttctccacgttgtccaggctggtcttgaactcctggccgtagttgatccgcccccatcggcctcccaaagtgctggaattacaggcgtgagccaccgtgcccagccT i calJac3.chr19 C 0 C 0 e mm10.chr1 178685977 827 + 195471971 I e canFam3.chr7 36259171 0 + 80974532 C e rheMac3.chr1 16782125 7 - 229590362 I e chlSab2.chr25 82394231 7 + 85787240 I e papAnu2.chr1 16595538 5 - 220367699 I e macFas5.chr1 223544563 5 - 227556264 I a score=83390.000000 s hg38.chr1_KI270759v1_alt 71519 89 + 425601 gtggctttaaaagcaacaaaaatgtat--tctcatagttctggagactgcaagtctgaaatcaaggtgtcggcc----gtgctgtgcttcctctg s panTro4.chr1 224819726 89 + 228333871 gtggctttaaaagcaacaaaattgtat--tctcatagttctggagactgcaagtctgaaatcaaggtgtcggcc----gtgctgtgcttcctctg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226177262 89 - 229942017 gtggctttaaaagcaacaaaaatgtat--tcttatagttccggagactgcaagtctgaaatcaaggtgtcggcc----gtgctgtgcttcctctg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140066511 93 - 143122389 gtggctttaaaagcaacaaaaatgtat--tctcatagttctggagactgcaagtctgaaatcaaggtgtcagcaggtggtgctgtgattcctctg i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14075511 83 - 49578535 gcggctttaaaagcaacaaaaatttat--tctcatagtttcagagactgccagtttgaaa------tgcaggca----gtgcggggcttcctctg i calJac3.chr19 C 0 C 0 s canFam3.chr7 36259171 83 + 80974532 gtggctccaaa--caacaaaattgtattctctcatagttttggaggctggaagtcccagatcaaggtg----------ggacagtgctgcttctg i canFam3.chr7 C 0 C 0 e mm10.chr1 178685977 827 + 195471971 I e rheMac3.chr1 16782125 7 - 229590362 I e chlSab2.chr25 82394231 7 + 85787240 I e papAnu2.chr1 16595538 5 - 220367699 I e macFas5.chr1 223544563 5 - 227556264 I a score=150316.000000 s hg38.chr1_KI270759v1_alt 71608 151 + 425601 aaggccccagggaag----agtccttcctcgcc---------cttctgttggctccaggt-attccttggcttctgatgcatccctccaatctctgcctt-------------------gggtctcgctgtgt------cctcttctttt-ctat----aaggacaaaagccattgggtttagagtctaccccaa s panTro4.chr1 224819815 151 + 228333871 aaggccccagggaag----agtccttcctcgcc---------cttctgttggctccaggc-attccttggcttctgaggcatccctccaatctctgcctt-------------------gggtctcgctgtgt------cctcttctttt-ctat----aaggacaaaagccattgcgtttagagtctaccccaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226177351 152 - 229942017 aaggccccagggaag----agtccttcctcacc---------cttctgttggctccaggcaattccttggcttctgatgcatccctccaatctctgcctt-------------------gggtctcgctgtgt------cctcttctttt-ctgt----aaggacaaaagccattgggtttagagtctaccccaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140066604 159 - 143122389 aaggccccagggaag----agtccttcctcaccccttccag-cttctgttggctccaggc-attccttggcttctgatgcatccctcaaatctctgtctt-------------------aggcctcgctgtgt------cctcttctttt-ctat----aagaacacaagccattgggtttagagtctaccccaa i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14075594 152 - 49578535 aaggctccagggaag----aatccttcctcccc-----cag-cttctcttggctccaggc-atgccacagcttccgatgcatcgccccaatctctgcctc-------------------gtgtctcactgtgt------cctcttctttt-ccat----acagacacaagccattggatttagagtctgccta-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178686804 162 + 195471971 AAGGCTACAGGGGAGCAGAAAGCTTTCCTTACC-----------TCTTCTAGACCCtgtt-gcttctgggcctgtgctatagcacccc-atctctgcctg-------------------attccacacagtttgtcccaccttctctctg-ttgtagggaaagacacagatcactggatttggagccttcctcag i mm10.chr1 I 827 C 0 s canFam3.chr7 36259254 180 + 80974532 aagactctagggagg----aatccttcctttcctcttccaatatcccagtggctgtagga-gccccttgccttgtggctgcttcctctagtctctgcctttccaaggacttctcctctggggtctctctgtgt------tctctcctcttattac----aaggactccagccatcagattaagggcccaccgtaa i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16782125 7 - 229590362 I e chlSab2.chr25 82394231 7 + 85787240 I e papAnu2.chr1 16595538 5 - 220367699 I e macFas5.chr1 223544563 5 - 227556264 I a score=979652.000000 s hg38.chr1_KI270759v1_alt 71759 393 + 425601 tccagtaggatctcatctcaatccttaactacTATATGggtgcaaaagcaattgtgggttttgccattaaaaatcatagcaatttctgcaattacttttgcacctatctaataattacatcttcaaagaccctatttccaaataaggtcacat---------tctaaatagat----------agacagacagaca-----ga----cagataact--agctagctagataa-----gata-gataaataaaaagaagaAAAGTGAAGT-----TGC------AGAGGTAAA--AGGTACATGCGG-GCTCTTTCCTT-----GCTGAACCACT-TCTGAAGAAGGAGCAGGTGCA-GCATCCACGGCTGGTCAGCAGTGGAGGATTCTCATTCATGTTCTTTGCTTGGAGGAA--------AAAAAAGGAACAAGTGGAAAAGATGAAAA----------------------------------------------------------------CGGGCCA s panTro4.chr1 224819966 387 + 228333871 tccagtaggatctcatctcaatccttaactacTGTATGggtgcaaaagcaattgtgggttttgccattaaaaatcatagcaatctctgcaattacttttgcacctatctaataattacatcttcaaagaccctatttccaaataaggtcacat---------tctaaatagat----------agacagacagaca-----ga--------taact--agctagctagataa-----gata-gataaataAAAAGAAGAAAAGTGAAGT-----TGC------AGAGGTAAA--AGGTACATGCGG-GCTCTTTCCTT-----GCTGAACCACT-TCTGAAGAAG-AGAAGATGCA-GCATCCACGGCTGGTCAGCAGTGGAGGATTCTCATTCATGTTCTTTGCTTGGAGGAA--------AAAAA-GGAGCAAGTGGAAAAGATAAAAA----------------------------------------------------------------CGGGCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226177503 387 - 229942017 tccagtaggatctcatctcaatccttaactacTATATGggtgcaaaagcaattgtgggttttgccattaaaaataatagccatctctgcaattacttttgcacctatct----attacatcttcaaagaccctatttccaaataaggtcacat---------tctaaatagat----------agacagacagaca-----ga----cagataact--aactagctagataa-----gaca-gataaataAAAAGAAGAAAAGTGAAGT-----TGC------AGAGGTAAA--AGGTATATGCGG-GCTCTTTCCTT-----GCTGAACCGCT-TCTGAAGAAGGAGCAGATGCA-GCATCCACGGCTGGTCAGCAGTGGAGGATTCTCATTCATGTTCTTTGCTTGGAGGAA--------AAAA--GGAACAAGTGGAAAAGATAAAAA----------------------------------------------------------------CGGGCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140066763 396 - 143122389 tgcagtaggatctcatctcaatccttaactattatatgggtgcaaaagcaattgtgggttttgccgttaaaaataatagcaatctctgcaattac-tttgcacctatctaataattacatctgcaaagaccctatttccaaataaggtcacat---------tctaaatagat----------agacagacagata-----gacagacagataact--agctagctagataa-----gata-gataaataaaaagaagaAAAGTGAAGT-----TGC------AGAAGTAAA--AGGTATATGCGG-GCTCTTTCCTT-----GCTGAACCGCTAAATGAAGAAGGAGCAGATGCA-TTGTCCATGGCTGGTCAGCAGTGAGGGATTTTCATTCATGTTCTTTGCTTGGAGGAA--------AAAAG-GGAACAAGTGGAAAAGATAAAAA----------------------------------------------------------------TGGGCCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16782132 385 - 229590362 TCCAGTAGGATCTCATCTCAATCCTTAACTATTGTATGggtgcaaaagcaattgtgggttttgccattaaaaataatagcaatctctgcaattacttttgcaactatctaataattacatctgcaaagaccctgtttccaaataaggtcacat---------tctaaat------------------agacagata-----gg--------taact--agctagctagataa-----gaca-gataaataaaaagGAGAAAAGTGAAGTTGGAGTGC------AGAGGTGAA--AGGTATATGTGG-GCTTTTTCCTT-----GCTGAACCGCT-TCTGAAGAAGGAGCAGATACA-GCATCCACGGCTGATCAGCAGTGGGGGATTCCCATTCACGTTCTTTGCTTGGAGGAA--------AAAAG-GGCACCAGTGGAAAAGAGAAAAC----------------------------------------------------------------CAGGCCA i rheMac3.chr1 I 7 C 0 s macFas5.chr1 223544568 385 - 227556264 TCCAGTAGGATCTCATCTCAATCCTTAACTATTGTATGggtgcaaaagcaattgtgggttttgccattaaaaataatagcaatctctgcaattacttttgcaactatctaataattacatctgcaaagaccctgtttccaaataaggtcacat---------tctaaat------------------agacagata-----gg--------taact--agctagctagataa-----gaca-gataaataAAAAGGAGAAAAGTGAAGTTGGAGTGC------AGAGGTGAA--AGGTATATGTGG-GCTTTTTCCTT-----GCTGAACCGCT-TCTGAAGAAGGAGCAGATACA-GCATCCACGGCTGGTCAGCAGTGGGGGATTCCCATTCACGTTCTTTGCTTGGAGGAA--------AAAAG-GGCACCAGTGGAAAAGAGAAAAC----------------------------------------------------------------CAGGCCA i macFas5.chr1 I 5 C 0 s papAnu2.chr1 16595543 393 - 220367699 TCCAGTAGGATCTCATCTCAATCCTTAACTATTGTAtgggtgcaaaagcaattgtgagttttgccattaaaaataatagcaatctctgcaattacttttgcaactATCTaataattacatctgcaaagaccctgtttccaaataaggtcacat---------tctaaatagac----------agacagacagata-----gg--------taACT--AGCTAGCTAGATaa-----gaca-gataaataaaaaggagaaaagtgaagttggagtgc------agaggtgaA--AGGTATATGTGG-GCTTTTTCCTT-----GCTGAACCGCT-TCTGAAGAAGGAGCAGATACA-GCATCCACGGCTGGTCAGTAGTGGGGGATTCCCATTCACGTTCTTTGCTTGGAGGAA--------AAAAG-GGCACCAGTGGAAAAGAGAAAAC----------------------------------------------------------------CAGGCCa i papAnu2.chr1 I 5 C 0 s chlSab2.chr25 82394238 393 + 85787240 TCCAGTAGGATCTCATCTCAATCCTTAACTATTGTATGggtgcaaaagcaattgtgggttttgccattaaaaataatatcaatctctgcaattacttttgcacctatctaataattacatctgcaaagaccctgtttccaaataaggtcacat---------tctaaATAGAC----------AGACAGACAGATA-----GG--------TAACT--AGCTAGCTAGATAA-----GACA-GATAAATAAAAAGGAGAAAAGTGAAGTTGGAGTGC------AGAGGTGAA--AGGTATATGTGG-GCTTTTTCCTT-----GCTGAACCGCT-TCTGAAGAAGGAGCAGATGCA-GCATCCACGGCCGGTCAGCAGTGGGGGATTCCCATTCACGTTCTTTGCTTGGAGGAA--------AAAAG-GGCACCAGTGGAAAAGAGAAAAC----------------------------------------------------------------CAGGCCA i chlSab2.chr25 I 7 C 0 s calJac3.chr19 14075746 301 - 49578535 tccagtaggatctcgtctcaaTCCTTATCTATTATATGTgtgcaaaagcaattgtgatttttgccgttaaaaataatagcaaaaactgcagttacttttgtaccaatctgataattatatctgcaaaggccctatttccaaataaggtcacat---------tctagatagat----------aga-tgatagata-----ga------------------tagatagataA-----G-------------------------------------------------------------------------------------------CCACT-TCTGAAGAAGGAGCAGATGCAGGCGTCCACAGCTGGTTAGCAGGGGAGGGTTCCCATTCATCTTCTTTTCTTGGAAGGA--------AAAAG-GGAACAAGAGGAAAAGATAAAA------------------------------------------------------------------------ i calJac3.chr19 C 0 C 0 s mm10.chr1 178686966 264 + 195471971 tctagtatggtctcttctcaa-ccttaactg----------------------------------------------------------------------------------accatatctgcaaagactctatttctaaataaggatatat---------tctggggtGTC----------ACATGGACACAAATTTGGGG--------CAAAT-------TCTATGTAATGATTGACA-GAGAGGTAGACAAATGAAAAAGGAAGCTGGGGTGA------GGAAGTGAA----GTAGCCATGG-GCTCTTTCC-------------CAGCC---------------AAGTACA------CCCAGCTGGGC-------------TCCCACTC-TGTGGGTAG--TAGAGAAA--------CAAAG-GGAGC------AAAGATTAAAAA----------------------------------------------------------------AAGACAA i mm10.chr1 C 0 C 0 s canFam3.chr7 36259434 417 + 80974532 tccagtacggcctcatttcaatccttaacta----------------------------------------------------------------------------------gttacttccacaaagaccc-aattccaagtaaaggcacagatcctgagatctgagTGAATTTGGGGGAGGGGGCCACCATGCA-----AA--------CCACTGCAGACAGACAGACGG-----TAGATGGTAGGAGGATGGATGAAAGCTAAAGACAGGGTGCCATGAGAGTGGCAGATGAGAGATGTGCGGTGCCATGTCCTTTTACGGCTGAGTCACT-GTGGAAAAGGGAGCAGGTGCA-CATTTTACAGC-AAACAGCAGTGAAGTAGTCTTGTTCATGTCCTTCATTTGGAGAGACGTAAAGGGGAGG-GGGAAAGATACAAAGGGTAAAAAGCAAAGAGAGGCAggagcacctgggtggcttagtgggttgatgctctgactcttggtttcagctcaggtca i canFam3.chr7 C 0 I 151 a score=987360.000000 s hg38.chr1_KI270759v1_alt 72152 337 + 425601 AGTCGAGAGAGGGAGGGACGTGTCATACCT----GCATGCATCCTTATAC---TGGAGGGGAGCCT------CTCAAGAGCCAGACAAAATGAAAAAATGCTC--AGGGACAAAGTC-AACGATCAACCTGTATGCGTGGGTTTTTCATAGAATAACAGCCTC---CTCTTCTGAACTTACAGAATACCTTGTAAGTC-ATTTGTGCTTTCACAGCCACAGACATAAATGTAAACAGCACCTCTTGGGCCAC-CACCTGAGAGTAGATAAATTTAAGTTGCGAGCCTAATCAGACTGCTGCTGGGGGAGCCTTGTTCCTTCTCTACCGATCAAGCTGATAATT------------------TGGTCT----------------------GTATTTTTT s panTro4.chr1 224820353 337 + 228333871 AGTAGAGAGAGGGAGGGACGTGTCATACCT----GCATACATCCTTATAC---TGGAGGGGAACCT------CTCAAGAGCCAGACAAAATGAAAAAATGCTC--AGGGACAAAGTC-AGCGATCAACCTGTATGCATGGGTTTTTCATAGAATAACAGCCTC---CTCTTCTGAACTTACAGAATACCTTGTAAGTC-ATTTGTGCTTTCACAACCACAGACATAAATGTAAACAGCACTTCTTGGGCCAC-CACCTGAGAGTAGATAAATTTAAGTTGCGAGCCTAATCAGACTGCTGCTGGGGGAGCCTTGTTCCTTCTCTACTGATCAAGCTGATAATT------------------TGGTCT----------------------GTATTTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226177890 333 - 229942017 AGTAGAGA----GAGGGACGTGTCATACCT----GCATACATCCTTATAC---TGGAGGGGAACCT------CTCAAGAGCCAGACAAAATGAAAAAATGCTA--CGGGACAAAGTC-AACGATCAACCTATATGCATGGGTTTTTCATAGAATAACAGCCTC---CTCTTCTGAACTTACAGAATATCTTGTAAGTC-ATTTGTGCTTTCACAACCACAGACATAAATGTAAACAGCACTTCTTGGGCTAC-CACCTGAGAGCAGATAAATTTAAGTTGCGAGCCTAATCGGAGGGATGCTGGGGGAGCCTTGTTCCTTCTCTACTGATCAAGCTGATAATT------------------TGGTCT----------------------GTATTTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140067159 337 - 143122389 AGTAGAGAGAGGGAGGGACGTGTCATATCT----GCATACATCCTTATAC---TGGAGGGGAACCT------CTCAAGAGCCAGACAAAATGAAAAAATACTC--AGGGACAAAGTC-AATGATCAACCTGTATGCGTGGGTTTTTCGTAGAATAACAGCCTC---CTCTTCTGAACTTACAGAATACCTTGTAAGTC-ATTTGTGCTTTCACAACCACAGACGTAAATGTAAACAGCGCTTCTTGGACCGC-CACCTGAGAGTAGATAAATTTAAGTTGCGAGCCTAATCGGACTGATGCTGGGGGAGCCTTGTTCCTTCTCTACTGATCAAGCTGATAATT------------------TGGTCT----------------------GTATTTTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16782517 340 - 229590362 AGCAGAGAGAGGGAGGGACGTGTCATATCT----GCATACATCCTTACAC---TGGAGGGGAACCT------CTCCAGAGCCAGACAAAATGAAAAAATACTC--AGGGACAAAGTC-AGTGATCAACCTACACGCGCGGGCTTTTCGTAGAATAACAGCCTCAAGCTCTTCTGAACTCACAGAATACCTTATAAGTC-ATTTGTGCTTTCACAACTACAGGCATAAACGTAAACAGCACTTCTTGGACCAT-CACCTGAGAGCAGATAAATTTAAGTTGTGAGCCTCATCGGACTGATGCTGGGGGAGCCTTGTTCCTTCTCTACTGACCAAGCTGATAGTT------------------TGGTCT----------------------GTATTTTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223544953 340 - 227556264 AGCAGAGAGAGGGAGGGACGTGTCATATCT----GCATACATCCTTACAC---TGGAGGGGAACCT------CTCCAGAGCCAGACAAAATGAAAAAATACTC--AGGGACAAAGTC-AGTGATCAACCTACACGCGTGGGCTTTTCGTAGAATAACAGCCTCAAGCTCTTCTGAACTCACAGAATACCTTATAAGTC-ATTTGTGCTTTCACAACTACAGGCATAAACGTAAACAGCACTTCTTGGACCAT-CACCTGAGAGCAGATAAATTTAAGTTGTGAGCCTCATCGGACTGATGCTGGGGGAGCCTTGTTCCTTCTCTACTGACCAAGCTGATAGTT------------------TGGTCT----------------------GTATTTTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16595936 340 - 220367699 agcagagagagggagggacgtGTCATATCT----GCATACATCCTTATAC---TGGAGGGGAACCT------CTCCAGAGccagacaaaatgaaaaaatactt--aggGACAAAGTC-AGTGATCAACCTACACGGGTGGACTTTTCGTAGAATAACAGCCTCAAGCTCTTCTgaactcacagaatgccttataaGTC-ATTTGTGCTTTCACAACTACAGGCATAAACGTAAACAGCACTTCTTGGACCAT-CACCTGAGAGCAGATAAATTTAAGTTGTGAGCCTCATCGGACTGATGCTGGGGGAGCCTTGTTCCTTCTCTACTGACCAAGCTGATAGTT------------------Tggtct----------------------gtatttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82394631 340 + 85787240 AGCAGAGAGAGGGAGGGACGTGTCATATCT----GCATACATCCTTATAC---TGGAGGGGAACCT------CTCAAGAGCCAGACAAAATGAAAAAATACTC--AGGGACAAAGTC-AGTGATCAACCTACACGCGTGGGCTTTTCGTAGAATAACAGCCTCAAGCTCTTCTGAACTCACAGAATACCTTATAAGTC-ATTTGTGCTTTCACAACCACAGGCATAAACGTAAACAGCACTTCTTGGACCAT-CACCTGAGAGCAGATAAATTTAAGTTGTGAGCCTCATCGGACTGATGCTGGGGGAGACTTGTTCCTTCTCTACTGACCAAGCTGATAGTT------------------TGGTCT----------------------GTATTTTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14076047 263 - 49578535 --------------------------------------GTATTCTTATAC---TGGA-GGGAACCT------CTCAAGAGCCGGACAAAATGAAAAAATACTC--AGGGACAAAGTC-AGTGATGGACCTATATGCGTGGGCTTTTCGCAGAATGGCAGCCTC---CTCTT----------------------------------------ACAGCCGTAGGCATAAATGTGAATAGCACCTCTTGGAACAC-TGCCTGAGGGTAGGTAAATTCAAACTGAGAGCCTCAGCTGACCGATTCTAGGGGAGCCTTGTTCCTTCTCTGCCGACCAAACTGGTAAGT------------------TGGTCT----------------------GCAtttttt i calJac3.chr19 C 0 C 0 s mm10.chr1 178687230 302 + 195471971 AGCCAGGAGAGGCAGGGAGGTGACTTAGT------CACACCCCCTTA------------GGAGCCCAGAGGACTCCAGAG-CAGACAAAATG-CAAAGCAGGC--AGCCACTGGGGG-AAGGGTCAGCAGGAACACACTGA-------------------------CCCTTCCCGCCTGGTGCAAGCCCCTTCCACTC-ATCTGTGCTCACACAG------------AATTTTACAGCCCACCTCGGG----------GAGAGGAG------CTGACTAGTGGGTCTAAACTGAC-AATCATGGAAGGGGCCTGCTCTATCTCCACTGTCCTGGCAGACACTT------------------TGAGTTAACTTGGTTAGAGCAACTTGTAGGATTTTTT i mm10.chr1 C 0 C 0 s canFam3.chr7 36260002 363 + 80974532 aGCCAAGAGAGGCAGGGAGGTGTTGTACCCAGGGATAGACACCCTTATGCCGATGGAAGGGAACAC------CTCATGAGCTGGGGAAAAGAGAAAACTACTCATAGAGACAAGGTTGAGTGGCCAACGTACAGACATAGGCTTTCTA-GGAATAAGCAC------CTCATCTGAGCTTATGAAATAGTTTCAGGGTCTGTTTGCACCATCCCAGCCACAGGTGCGATTGTAAATTGCATTTCTGGGACCGCTTCCCTGGGGGAAGGTCAGATTCAGTTGAGGACCTCATCTGACCAGTGCCCCAGGGCTTCCAGTCCTTTTCTACAGACTGAGCTGGGGATTTGGGTTCAATTGTTGGGATGGTCT----------------------GTATTTTTT i canFam3.chr7 I 151 I 124 a score=3155.000000 s hg38.chr1_KI270759v1_alt 72489 2 + 425601 GT s panTro4.chr1 224820690 2 + 228333871 GT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226178223 2 - 229942017 GT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140067496 2 - 143122389 GT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16782857 2 - 229590362 GT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223545293 2 - 227556264 GT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16596276 2 - 220367699 gt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82394971 2 + 85787240 GT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14076310 2 - 49578535 gt i calJac3.chr19 C 0 I 617 s mm10.chr1 178687532 1 + 195471971 T- i mm10.chr1 C 0 C 0 s canFam3.chr7 36260489 2 + 80974532 gt i canFam3.chr7 I 124 C 0 a score=19350.000000 s hg38.chr1_KI270759v1_alt 72491 6 + 425601 TTTTAT s panTro4.chr1 224820692 6 + 228333871 TTTTAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226178225 6 - 229942017 TTTTAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140067498 6 - 143122389 TTTTAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16782859 6 - 229590362 TTTTAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223545295 6 - 227556264 TTTTAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16596278 6 - 220367699 ttttat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82394973 6 + 85787240 TTTTAT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178687533 6 + 195471971 TTTCtt i mm10.chr1 C 0 C 0 s canFam3.chr7 36260491 6 + 80974532 ctttac i canFam3.chr7 C 0 C 0 e calJac3.chr19 14076312 617 - 49578535 I a score=669000.000000 s hg38.chr1_KI270759v1_alt 72497 246 + 425601 ----CTTT------------------------------------------AGTAACATTTCTAGGCTCTAAAAGGAGGCT---AGAAACAGCAGGTAAGATGC--TGTGTGCCTTCAAGGGGAATTTCTTAGTTACTAGTAATAGTTACTTACCATCCCTCCCCCTTTTTGATGTGGGTGAGAGGGGTTAGGTGGGGAGGTGGGGGGTGGTGGG-AATGTGG-CTATTATCACCCAAGCAAGGGAGGAGTTATTTTC----------CCCTCCCAGGCAAAGCTTGGGTTGGGGGCAGAGCTGAGCATC s panTro4.chr1 224820698 242 + 228333871 ----CTTT------------------------------------------AGTAACATTTCTAGGCTCTAAATGGAGGCT---AGAAACAGCAGGTAAGATGC--TGTGTGCCTTCAAGGGGAATTTCTTAGTTACTATTAATAGTTAC----CATCCCTCCCCCTTTTTGATGTGGGTGAGAGGGGTTAGGTGGGGAGGTGGGGGGTGGTGGG-AATGTGG-CTATTATCACCCAAGCAAGGGAGGAGTTATTTTC----------CCCTCCCAGGCAAAGCTTGGGTTGGGGGCAGAGCTGAGCATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226178231 237 - 229942017 ----CTTT------------------------------------------AGTAACATTTCTAGGCTCTAAAAGGAGGCT---AGAAACAGTAGGTAAGATGC--TGTGTGCCTTCAAGGGGAATTTCTTAGTTACTATTAATAGTTAC----CATCCCTCCCCCTTTTTGATGTGGGTGAGAGGGGTTAGGTGGGGA-----GGGGTGGTGGG-AATGTGG-CTACTATCACCCAAGCAAGGGAGGAGTTATTTTC----------CCCTCCCAGGCAAAGCTTGGGTTGAGGGCAGAGCTGAGCATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140067504 240 - 143122389 ----CTTT------------------------------------------AGTAATATTTCTAGGCTCTAAAAAGAGGCT---AGAAACAGTAGGTAAGATGC--TGTGTGCCTTAAAGGGGAATTTCTTAGTTACTGTTAATAGTTAC----CATCCCTCCCCCTTTTTGATGTGGGTGAGAGGGGTTAGGTGGGGAG--GGGTGGTGGGGGG-AATGTGG-CTATTATCACCCAAGCAAGGGAGGAGTTATTTTC----------CCCTCCCAGGCAAAGCGTGGGTTGGGGGCAGAGCTGAGCATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16782865 237 - 229590362 ----CTGT------------------------------------------AGTAACCTTTCAAGGCTCCAAAAACAGGCT---AGAAACACTTGGTAAGATGC--TGTGTGCCTTAAAGAGGAATTTCTTGGTTACTATTAATAGTTAC----CATCCCCCCCCCTTTTTGATGTGGGTGAGAGGGGTTAGGTGGGGA-----GGGGTGGTGGG-AATGTGG-CTATTATCACCCAAGCAAGGGAGGAGTTATTTTC----------TCCTCCCAGGCAAACCTTGGGTCAAGGGCAGAGCTGAGCATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223545301 236 - 227556264 ----CTGT------------------------------------------AGTAACCTTTCAAGGCTCCAAAAACAGGCT---AGAAACACTTGGTAAGATGC--TGTGTGCCTTAAAGAGGAATTTCTTGGTTACTATTAATAGTTAC----CAT-CCCCCCCCTTTTTGATGTGGGTGAGAGGGGTTAGGTGGGGA-----GGGGTGGTGGG-AATGTGG-CTATTATCACCCAAGCAAGGGAGGAGTTATTTTC----------TCCTCCCAGGCAAACCTTGGGTCAAGGGCAGAGCTGAGCATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16596284 237 - 220367699 ----ctgt------------------------------------------agTAACCTTTCAAGGCTCCAAAAACAGGCT---AGAAACACTTGGTAAGATGC--TGTGTGCCTTAAAGGGGAATTTCTTGGTTACTATTAATAGTTAC----CATCCCTCCCCCTTTTTGATGTGGGTGAGAGGGGTTaggtgggga-----ggggtggtggg-AATGTGG-CTATTATCACCCAAGCAAGGGAGGAGTTATTTTC----------CCCTCCCAGGCAAAGCTTGGGTCGAGGGCAGAGCTGAGCATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82394979 237 + 85787240 ----CAGT------------------------------------------AGTAACATTTCAAGGCTCCAAAAACAGGCT---AGAAACACTTGGTAAGATGC--TGTGTGCCTTAAAGGGGAATTTCTTAGTTACTATTAATAGTTAC----CATCCCTCCCCGTTTTTGATGTGGGTGAGAGGGGTTAGGTGGGGA-----GGGATGGTGGG-AATGTGG-CTATTATCACCCAAGCAAGGGAGGAGTTATTTTC----------CCCTCCCAGGCAAAGCTTGGGTCGAGGGCAGAGCTGAGCATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14076929 214 - 49578535 ----CTTT------------------------------------------AGTAACATTTTTAGGCTCCAAACAGAGGCT---AGCAACAGTAGGTAAGGC-C--TGTGTGCCTTC--GGGGAGCAACTTAGTTACTGTTAATAGTTAT----CTTCCCTCCCGCTTCTTGACGTGGGTGAGAGGGGTTAGGTGGTAA-------GGTGGTGGG-AATGTGG-CTCTTAGCGCCCGCGCAAGGCAGGACTTACTGTC----------CTCTCCCA------------------GGCAGAGCTGAGAACT i calJac3.chr19 I 617 C 0 s mm10.chr1 178687539 180 + 195471971 ----cttt------------------------------------------aaaaatatacctagattctagaaagaggctggaggaaataataaggaaggtgccttgtttgcctcag-----------------------------cac----ca---------------aatgtgagtGGGTGGGATGGGGTGGGCC---AGTGGACAGAGGGTGTTTTGG-CTTGTCTGCCCTGATCTTGG-----------------------------CTAAGCTAAGCT--GGGTGCCAACAAAACTGAGCATT i mm10.chr1 C 0 C 0 s canFam3.chr7 36260497 260 + 80974532 ctctctttgtgtgtctgtcgtgaataaataaataaaatcttgaaaaagaGAGAAATATTTCTGGGCTCCAGAAGGAAGCC---AGAAAT-GTGGGTAAGGTGC----TGTGCCTTGAAAAGAGGGTTTTTAA---------------GC----CACGCCTCCATTTACTAGGC----------------AGGTGGCAA---GAGGGGTGGTTGG-CATGGGGACGATGCTCTCTCAAGCTTGG--GGACTGACTTTCCTCCCTCCGGCTCTCCTGGGCTGGGCTTGGGTGGAGGGCACAGCTGAGAATC i canFam3.chr7 C 0 I 358 a score=185814.000000 s hg38.chr1_KI270759v1_alt 72743 64 + 425601 CCTGCACAGGGGGTGAAACAGGTGGGAGAGAAGATTGCCTAGATGTAGATGCTTTTCACAGTCG s panTro4.chr1 224820940 64 + 228333871 CCTGCACAGGGGGTGAAACAGGTGGGAGAGAAGATTGCCTAGATGTAGATGCTTTTCACAGTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226178468 64 - 229942017 GCTGCACAGGGGGTGAAATAGGTGAGAGAGAAGATTGCCTAGATGTAGATGCTTTTCACAGTTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140067744 64 - 143122389 GCTGCACAGGGGGTGAAACAGGTGAGAGAGAAGATTGCCTAGATGTAGATGCTTTTCACAGTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16783102 64 - 229590362 GCTGCACAGGGGGTAAAATAGGTGAGAGAGAAGATTGCCTAGATGTAGATGCTTTTCACAGTTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223545537 64 - 227556264 GCTGCACAGGGGGTAAAATAGGTGAGAGAGAAGATTGCCTAGATGTAGATGCTTTTCACAGTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16596521 64 - 220367699 GCTGCACAGGGGGTGAAATAGGTGAGAGAGAAGATTGCCTAGATGTAGATGCTTTTCACAGTTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82395216 64 + 85787240 GCTGCACAGGGGGTGAAATAGGTGAGAGAGAAGATTGCCTAGATGTAGATGCTTTTCACAGTTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14077143 64 - 49578535 GCTTCCTACTGGGTGGAGTAGGTGAGAGAGAAGACCTCCCAGAGGTGGTTGCTTTTCCCGGTTA i calJac3.chr19 C 0 C 0 s mm10.chr1 178687719 54 + 195471971 GTCACACCGTGGGGACTGTA-GTTAGAGTGGAGACTGTGGATAAGCA---------CACAGACG i mm10.chr1 C 0 C 0 e canFam3.chr7 36260757 358 + 80974532 I a score=2287146.000000 s hg38.chr1_KI270759v1_alt 72807 747 + 425601 TCTTGTGTGTTAGAGGTCTGCCCACATCCTGTCTCACT-CAGCCACCCTCCCCAGACCTTGTTCCCTCAGGCTGAATTTTCACTTTCCTAT--GGGTTGAAGAAAAGAGCCAGGGAGTATGCAGGCTCCATGGTGAGCAGGCCAAGGGGGAA-ACAACAGCTACTGCTTTTTT-------T-----CATTTTAATGACAAAGAAAACAG-ATCGTTTTAGAAAGTCT--GAGGCTGATACTCATCAATGATTTTATCCAAATCTCACACAATGAGAGGTTG------GGGTCATGCTGGATTTGCTGCTCATGCACCAGAAATAAAACACCAGGT------TCcttgctgactgt-----gtgacct----caagcgggcttcttaactgctatgtg--cctgaatttcctcctctgcagagtggaaacttccagagctgttgttgggatcatgtgagagggcgtgttttgcatacttagtgctgtgtgtgacacatggCGACTTCTCCGTGAAGTTGACTGAA--CCTTGAGCGCCATTTTCTTTTACTCAACTCAAGTTCATGTGACTCAA-GTTAAATGGAATCAGGACCCTCTTTTCCATTGTAAGAGCCAGTGGCAGATGAAAAGACATCAATCACCAATTTCATAAAGTGAATATCAAGCACATAAAATAAATGTTATCCTGCAAATCTGAAAACATTCCCTCCTTGACATA-TTGCCAAAAAATCAACTTTCCATAT-GTACATCACATCTCGTGTGAGAATGTCATATTTTAAGTAGATGTGATCT s panTro4.chr1 224821004 747 + 228333871 TCTTGTGTGTTAGAGGTCTGCCCACATCCTTTCTCACT-CAGCCACCCTCCCCAGACCTTGTTCCCTCAGGCTGAATTTTCACTTTCCTAT--GGGTTGAAGAAAAGAGCCAGGGAGTATGCAGGCTCCATGGTGAGCAGGCCAAGGGGGAA-ACAACAGCTACTGCTTTTTT-------T-----CATTTTAATGACAAAGAAAACAG-ATCGTTTTAGAAAGTCT--GGGGCTGATACTTATCAATGATTTTATCCAAATCTCACACAATGCGAGGTTG------GGGTCATGCTGGATTTGCTGCTCATGCACCAGAAATAAAACACCAGGT------TCcttgctgactgt-----gtgacct----caagcgggcttcttaactgctatgtg--cctgaatttcctcctctgcagagtggaaacttccagagctgttgttgggatcatgtgagagggcgtgttttgcatacttagtgctgtgtgtgacacatggcgacttctccgtgaagttgattGAA--CCCTGAGCGCCATTTTCTTTTACTCAACTCAAGTTCATGTGACTCAA-GTTAAATGGAATCAGGACCCTCTTTTCCATTGTAAGAGCCAGTGGTAGATGAAAAGACATCAATCACCGATTTCATAAAGTGAATATCAAGCACATAAAATAAATGTTATCCTGCAAATCTGAAAACATTCCCTCCTTGACATA-TTGCCAAAAAATCAACTTTCCATAT-GTACATCACATCTCGTGTGAGAATGTCATATTTTAAGTAGATGTGATCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226178532 741 - 229942017 TCTTGTATTTTAGAGGGCTGCCCACATCCTTTCTCACT-CAGCCACCCTCCCCAGACCTTGTTCCCTCAGGGTGAATTTTCACTTTCCTAT--GGGTTGAAGAAAAGAGCCAGGGAGTATCCAGGCTCCATAGTGAGCAGGCCAAGGGGGAA-ACAACAGCTACTGC--TTTT-------T-----CCTTTTAATGTCAAAGAAAACAG-ATCGTTTTAGAAAGTGT--GAGGCTGATACTCATCAATGATTTTATCCAAGTCTCACACAATGAGAGGTTG------GGGTCATGCTGGATTTGCTGCTCATGCACCAGAAATAAAACACCAGCT------TCcttgctgactgt-----gtgacct----caagcgagcttcttaactgctatgtg--cctgaattttctcctctgtagagtggaaacttccagagctgttattgggatcatgtgagagggtgtgtgttgcatacttagcgctgtgtgtgacacatggcaacttctccgttaagttgattGAA--CCTTGAGTGCCATTTTCTTTTACTCAACTCAAGTTCATGTGACTCAA-GTTAAATGGAATCAGGACCCTCTTTTCCATTGTAAGAGCCAATGGTAGCTGAAAAAAC----ATCACCAATTCCATAAAGCAGATATCAAGCACATAAAATAAATGTTATCCTGCAAATCTGAAAACATTCCCTCCTTGACATA-TTGCCAAAAAATCAGCATTCCATAT-GTACATCACATCTCGTGTGAGAATGTTGTATTTTAAGTTGACGCGATCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140067808 741 - 143122389 TCTTGTGTTTTAGAGGGCTGCCCACATCCTTTCTCACT-CAGTCACCGTCCCCAGACCTTGTTCCCTCAGGCTGAATTTTCACTTTCGTAT--GGGTTAAAGAAAAGAGCCAGGGAGTATCCAGGCTCCATGGCGAGCAGGCCAAGGGGGAA-ACAACAGCTACTGCTTTTTT-------T-----CATTTTAATGACAAAGAAAACAG-ATTGTTTCAGAAAGTCT--GAGGCTGATACTCATCAATGATTTTATCCAAGTCTCACGCAATGAGAGGTTG------GGGTCATGCTGGATTTGCTGCTCATGCACCAGAAATAAAACACCAGCT------TCcttgctgact-t-----gtgacct----caagcgggcttcttaactgctatgtg--cctgaattttctcctctgcagagtggaaacttccagagctgttattgggatcatgtgagagggtgtgtgttgcatacttagggctgtgtgtgacacatggcaacttctccgttaagttgattGAA--CCTTGAGTGCCATTTTCTTTTACTCAACTCAAGTTCTTGTGACTCAA-ATTAAATAGAATCAGGACCCTCTTTTCCATTGTAAGAGCCAGTGGTAGATGAAAAAAC----ATCACCAATTCCATAAAGTGAGTATCAAGCACATAAAATAAATGTTATCCTGCAACTCTGAAAACATCCCCTCCTTGACATA-TTGCC-AAAAATCAACTTTCCATAT-GTACATCACATCTCGTGTGAGAATGTCATATTTTAAGTAGATGTGATCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16783166 738 - 229590362 TCTTG-----TAGAGGGCTGCCCACATCCTTTCTCACT-CAGCCACCCT-CCCAGACCTTGTTCCCTCAGGCTGAATTTTCAGTTTCCTAT--GGGTTGAAGAAAAGAGCCAGGGAGTATCCAGGCTCCATAGTGAGCTGGCCAAGGGGAAA-ACGACAGCTACTGCTCTTTT-------T-----CATTTTAATGACAAATAAAACAG-ATCGTTTTAGAAACTCA--GAGGCTGATACTCATCCATGATTTTATCCAAGTCTCACACAACGAGAGGTTG------GGGTCATGCTGGATTTGCTGCTCATGCACCAGAAATAAAACACCAGCT------TCcttgctgactgt-----gtgacct----cgagcgggcttcttaactgctatgtg--cctgaatgttctcctctgcagagtggaaacttccagagctgtta-tgggatcatgtgagagggtgtgagttgcacacttagcactgtgcgtgacacgtggcaaCTTCTCCGTTAAGTTCATTGAATTCCTTGAGTGACATTTTCTTTTACTTAACTCGAGTTCACGTGACTCAA-ATTAAATGG-ATCAGGACCCTCTTTTCCATTGTGAGAGCCAGTGGTAGATGAAAAAAC----ATCACCAATTCCATAAAGTGAGTATCAAGCACATAAAATAAATGTTATCATGCACCTCCGAAAACATTCCCTCCTCGACATATTTGCCAAAAAATCCACTTTCCATAT-GTACATCACATCTCATGTGAGAATGCCGCATTTTAAGTAGACGTGATCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223545601 738 - 227556264 TCTTG-----TAGAGGGCTGCCCACATCCTTTCTCACT-CAGCCACCCT-CCCAGACCTTGTTCCCTCAGGCTGAATTTTCAGTTTCCTAT--GGGTTGAAGAAAAGAGCCAGGGAGTATCCAGGCTCCATAGTGAGCTGGCCAAGGGGAAA-ACGACAGCTACTTATCTTTT-------T-----CATTTTAATGACAAATAAAACAG-ATCGTTTTAGAAACTCA--GAGGCTGATACTCATCCATGATTTTATCCAAGTCTCACACAACGAGAGGTTG------GGGTCATGCTGGATTTGCTGCTCATGCACCAGAAATAAAACACCAGCT------TCcttgctgactgt-----gtgacct----cgagcgggcttcttaactgctatgtg--cctgaatgttctcctctgcagagtggaaacttccagagctgtta-tgggatcatgtgagagggtgtgagttgcacacttagcactgtgcgtgacacgtggcaaCTTCTCCGTTAAGTTCATTGAATTCCTTGAGTGACATTTTCTTTTACTTAACTCGAGTTCACGTGACTCAA-ATTAAATGG-ATCAGGACCCTCTTTTCCATTGTGAGAGCCAGTGGTAGATGAAAAAAC----ATCACCAATTCCATAAAGTGAGTATCAAGCACATAAAATAAATGTTATCATGCACCTCCGAAAACATTCCCTCCTCGACATATTTGCCAAAAAATCCACTTTCCATAT-GTACATCACATCTCATGTGAGAATGCCGCATTTTAAGTAGACGTGATCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16596585 738 - 220367699 TCTTG-----TAGAGGGCTGCCCACATCCTTTCTCACT-CAGCCACCCT-CCCAGACCTTGTTCCCTCAGGCTGAATTTTCAGTTTCCTAT--GGGTTGAAGAAAAGAGCCAGGGAGTATCCAGGCCCCATAGTGAGCTGGCCAAGGGGAAA-ACGACAGCTActgctctttt-------t-----cattttaatggcaAATAAAACAG-ATCGTTTTAGAAACTCA--GAGGCTGATACTCATCCATGATTTTATCCAAGTCTCACACAATGAGAGGTTG------GGGTCATGCTGGATTTGCTGCTCATGCACCAGAAATAAAACACCAGCT------TCCTTGCTGACTGT-----GTGACCT----CGAGCGGGCTTCTTAACTGCTGTGTG--CCTGAATGTTCTCCTCTGCAGAGTGGAAACTTCCAGAGCTGTTA-TGGGATCATGTGAGAGGGTGTGAGTTGCACACTTAGCACTGTGCGTGACACGTGGCAACTTCTCCGTTAAGTTCGTTGAATTCCTTGAGTGACATTTTCTTTTACTCAACTCGAGTTCACGTGACTCAA-ATTAAATGG-ATCAGGACCCTCTTTTCCATTGTGAGAGCCAGTGGTAGATGAAAAAAC----ATCACCAATTCCATAAAGTGAGTATCAAgcacataaaataaatgttatcctGCACCTCCGAAAACATTCCCTCCTCGACATATTTGCCAAAAAATCCACTTTCCATAT-GTACATCACATCTCATGTGAGAATGCCGCATTTTAAGTAGACGTGATCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82395280 733 + 85787240 TCTTG-----TAGAGGGCTGCTCACATCCTTTCTCACT-CAGCCACCCT-CCCAGACCTTGTTCCCTCAGGCTGATTTTTCAGTTTCCTAT--GGGTTGAAGAAAAGAGCCAGGGAGTATCCAGGTTCCATAGTGAGCTGACCAAGGGGAAA-ACAACAGCTACTGCTCTTTT-------T-----CATTTTAATGACAAATAAAACAG-ATCGTTTTAGAAACTCA--GAGGCTGATACTCATCCATGATTTTATCCAAGTCTCACACAACGAGAGGTTG------GGGTCATGCTGGATTTGCTGCTCATGCACCAGAAATAAAA---CAGCT------TCcttgctgactgt-----gtggcct----cgagcaggcttcttaactgctgtgtg--cctgaatgttctcct-tgcggagtggaaacttccagagctgtta-tgggattatgtgagagggtgtgagttgcacacttagcactgtgcgtgacacgtggcaaCTTCTCCGTTAAGTTCGTTGAA--ACTTGAGTGCCATTGTCTTTTACTCAACTCGAGTTCATGTGACTCAA-ATTAAATGGAATCAGGACCCTCTTTTCCATTGTGAGAGCCAGTGGTAGATGAAAAAAC----ATCACCAGTTCCATAAAGTGAGTATCAAGCACATAAAATAAATGTTATCCTGCACCTCCGAAAACATTCCCTCCTTGACGGATTTGCCAAAAAATCCACTTGCCATAT-GTACATCACATCTCATGTGAGAATGCCGCATTTTAAGTAGACGTGATCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14077207 719 - 49578535 TCTGC-----T-----TCCTTCTCCATCCTCTCAT-CT-CAGCCACCCTCCCCCAACCTTGTTCCCTCAGGCTGAATTTTCACTTTCGTCT--GGGTTGAA-------------GAGTATCCGAGCTCCAGAGCCAGCTGGCCAAGGGGGAA-ACAACAGCCACTGCCTTTTTCCCCTCCT-----CATTTTAATGACAAAGAAAACAG-ATAGTTTCAGAAAGTCT--GAGGCTGATCCTCATCAATGATTTTATCCAAGCCTCACACAgtgcaagggcg------agggcatgctggatttgccgctcatgcaccagaaataaaagcccagct------tccttgctgactgt-----gcgaccg----caagtgggcttcttaactgcaatgtg--tgtgaattttctcctctgcagagtggaaagct-cagagctgttatggggatcatgtgagagagtgcatgttgcatacttagcactgcatgtgacacagGCCAACTTACCCGTTAAGTTCCTTGAA--CCTTGAGTGCCATTTTC-----CTCTGCTCGAATTCACGTGACTCAA-GTTAAATGGAATCAGGGCTCTCTTTTCCATTGCAAGAGCCAGTGGTTGATGAAAAAAC----ACCACCAATTCCAT-AAGTGAATGTCAAGCACATAAAATAAATGTTAGCCTGCAATTCCAAAAACATTCCCTCCTCCACATA-TTACCAAAAAACCAGCTTTCCCTAT-GTACGTAACAGCATATGTGACAATGTCATATTTTAAGTAGAAGTGATCT i calJac3.chr19 C 0 I 307 s mm10.chr1 178687773 617 + 195471971 CTGTA-----T---------------CCCTTCCTCTTT-CAGCCATCTTCTCCAGGA--TGTCTCCAGTGACAGAGCTTTCCCTTCTTTAT--------------AGAGTCAAGGTGTTTGTTG--TCCACAGTGGGCTGGCTAAGTGAGAATAGCACAGCTGAGGTTTCTTT----------------------------------------------GAAGGTCTCCAAGGGGGCTAGGCATCACAGATCTTCTCTAAGTGTGA-AGGATGAAAGGCTG------GGGTCATACTAGACTTACCTCTCCCACA-CAGAAACACCCTCCCTGCCCTGCGGCCCTAACCTGCTAT-----GGGGCCT----CCATGGAGCCTTCTCACTGTGGAGAG--TTTGCACTTTCTCCTGGGTAAAGTTGC---------AGTTGTTGTGGGGATGATATGAGATGAGGTCCCTTA---ATGTGGCTCTGGGTGTAGCACCCAGTAG--TGTCCATGACACTTATTGAA--GTTGGAAGGCCATCTTC-----CTTCAGGCAGGGTCAC--AATCTGA-GCTGAATAGACCCAGTGTGGCCCTTTCAGT--AAAGAACTCACGGTAGCTGAAGAAAC----AGTACCCAAACCATCAAGTCGGTATGGAAGCCATAG--------------------------------CCCT-----------CTGCAAAGAAACTAGCTTTCCAAAGAGCACGTCACATTTCAAATGAGAATCTCATATTTTAAGTAGAAATGTTCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36261115 709 + 80974532 tCTTTTGTTTTAAATAGCTTCCCACATCCTCCCTCTTTGGGGCCAGGCTCCCTAGCCATGATTTCCTTAGGCAGCATATTTGCTTTCTTTATGGGGCTGAGGAAGAAAACTA--GAATACCTACCGGCCATAGTGAAATGGTCAAAGGGGTA-ACGACAGCCACCGCCTTTTT-------TTTTTCTTTTTTAAGGACAAAGTAAACAGAATTTTTTGGGAAAGTCT--GGGGCTGATACTTATCAATGATTTTATCCAAGTCTCAAACAATGAGGCACTAGATGTTGGGTCACGCTAGATTTGCTGCTTATGCACCAGAAGTAAAAGCCCAGTG------TCCTTGCTGACTGTGTGGGGTGACCTCTAGCTAGCGGGCTTCCTGGCTGTCACGTGTCTCTGTGTTTTGTCCTCTGCAAAGCACACAGTTGCAGAGCTGCTACGGGCACTATAGGGGATGAT----------------GGACCAAGTCTGACACATGGTGGCCCCTCCGTTCAGTGACCTGAA------------------------GCCAGCTCAGTCTCAA--GACTCAACACTGAATGGAACTAGAGTGTGCTTTACCAT---AAGAACCAGTGGTAGTTGAGAAAAC----AAGACCCAGACTATATAGTAAATATAAAACACCTGAAAGAAATGGTACTCACCAGCTCAGAATATCAGCCATCTC--------CTACC-ACACCCCAACTCTCCATAT-GGGCACCACAGCTGACAC----AGGTCAGATTCTAAGTAGA----ATCT i canFam3.chr7 I 358 C 0 a score=1198809.000000 s hg38.chr1_KI270759v1_alt 73554 369 + 425601 CATTTTATCATTAG----TG----AATTAATAAAATACTGA----AAGGCTCATTGACCAGTTTTCCCCCATATTTGGGGATCT--TTCTAAGGGAGGAGGGAAAGCAGCAAATAGATTCGAATCATTTAAAATTTTACAGCGTAGTGGACAGGTCACATTTAAAATAACCCAAACA-AGTCAA-ACGTTA-TTATTTTGGAATTCAT-TTGAAATATCAAGCAATTCAGGCCTAgtttatgattt-tttttttttttt--ggtttgtgattCT--TACCGAA---CTCTTTGAAACACAGGACTCAGCCCTTTCATTCTTGGTTTCCTTATCTATATGCTTATGGTATATTATTAATATGTTTGCTTTCCTATTCTTTTATGTATTTATAAAAT s panTro4.chr1 224821751 369 + 228333871 CATCTTATCATTAG----TG----AATTAATAAAATACTGA----AAGGCTCATTGACCAGTTTTCCCCCATATTTGGGGATCT--TTCTAAGGGAGGAGGGAAAGCAGCGAATAGATTCGAATCATTTAAAATTTTACAGCGTAGTGGACAGGTCACATTTAAAATAACCCAAACA-AGTCAA-ACGTTA-TTATTTTGGAATTCAT-TTGAAATATCAAGCAATTCAGGCCTAGTTTATGATTT-TTTTTTTTTTTT--GGTTTGTGATTCT--TACCGAA---CTCTTTGAAACACAGGACTCAGCCCTTTCATTCTTGGTTTCCTTATTTATATGCTTATGGTATATTATTAATATGTTTGCTTTCTTATTCTTTTATGtatttataaaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226179273 373 - 229942017 CATTTTATCATTAG----TG----AATTAATAAAATACTGA----AAGGCTCAGTGACCAGTTTACCCCCATATTTGGGGACCGAAATCTAAGGGAGGAGGGAAAGCAGCAAATAGATTCGAATCATTTAAAATTTTACAGTGTAGTGGACAGGTCACATTTAAAATAACCCAAACA-AGTCAA-ACGTTA-TTATTTTGGAATTCAT-TTGAAATATCATGCAATTCAGGCCTAGTTTATGATTT-TTTTTTTTTTTTTCGGTTCATGATTCT--TACTGAA---CTCTTTGAAACACAGGACTCAGCCCTTTCATTCTTGGTTTCCTTATTTATATGCTTATGGTATATTATTAATAAGTTTGCTTTCTTATTGTTTTATGTATTTATAAAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140068549 363 - 143122389 CATGTTATCATTAG----TG----AATTAATAAAATACTGA----AAGGCTCATGGGCCAGTTTTCCCCCATATTTGGGGACCT--TTCTAAGGGAGGACGGAAAGCAGCAAATAGATTCAAATCATTTAAAATTTGACAGCGTAGTGGAGAGGTCACATTTAAAATAACCCAAACA-AGTCAA-ACGTTA-TTATTTTGGAATTCAT-TTGAAATATCAAGCAATTCAGGCCTAGTTTATGATTT-TGTTTT--------GGTTCGTGATTCT--TACTGAA---CTCTTTGAAACACAGGATTCAGCCCTTTCATTCTTGGTTTCCTTATTTATATGCTTATGGTATATTATTAATATGTTTGCTGTCTTATTCTTTTATGTGTTTATAAAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16783904 367 - 229590362 CATTTTATCATTAG----TG----AATTAACAAAATACTGA----AAGGCTCATTGACCAGCTTTCCCCCGTATTTGGGGACCT--TTCTAAGGGAGGAGAGAAAGCAGCAAATAGATTCGAATCATTTAGAATTTTACAGTGTAGTGGAGAGGTCACATTTAAAATAACCCAAACA-AGTCAA-ACTTTA-TTATTTTGGAATTCAT-TTGAAATATCAAGTAATTCAGTCCTAGTTTATGATCC---TTTTTTTTTT--GTTTTGTGATTCT--TATTGAA---CTCTTTGAAACACAGGACTCAGCCCTTTCATTCTTGGTTTCCTTATTTATATGCTTATGGTATACTATTAATACATTTGCTTTCTTATTCTTTTATGTATTTATAAAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223546339 367 - 227556264 CATTTTATCATTAG----TG----AATTAACAAAATACTGA----AAGGCTCATTGACCAGCTTTCCCCCGTATTTGGGGACCT--TTCTAAGGGAGGAGAGAAAGCAGCAAATAGATTTGAATCATTTAGAATTTTACAGTGTAGTGGAGAGGTCACATTTAAAATAACCCAAACA-AGTCAA-ACTTTA-TTATTTTGGAATTCAT-TTGAAATATCAAGTAATTCAGTCCTAGTTTATGATCC---TTTTTTTTTT--GTTTTGTGATTCT--TATTGAA---CTCTTTGAAACACAGGACTCAGCCCTTTCATTCTTGGTTTCCTTATTTATATGCTTATGGTATACTATTAATACATTTGCTTTCTTATTCTTTTATGTATTTATAAAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16597323 366 - 220367699 CATTTTATCATTAG----TG----AATTAACAAAATACTGA----AAGGCTCATTGACCAGCTTTCCCCCGTATTTGGGGACCT--TTCtaagggaggagagaaagcagCAAATAGATTCGAATCATTTAGAATTTTACAGTGTAGTGGAGAGGTCACATTTAAAATAACCCAAACA-AGtcaa-acttta-ttattttggaaTTCAT-TTGAAATATCAAGTAATTCAGTCCTAGTTTGTGatcc----ttttttttt--ggtttgtgatTCT--TATTGAA---CTCTTTGAAACACAGGACTCAGCCCTTTCATTCTTGGTTTCCTTATTTATATGCTTATGGTATACTATTAATACATttgctttcttattcttttatgtatttataaaat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82396013 370 + 85787240 CATGTTATCATTAG----TG----AATTAACAAAATACTGA----AAGGCTCATTGACCAGCTTTCCCCCGTATTTGGGGACCT--TTCTAAGGGAGGAGAGAAAGCAGCAAATAGATTCGAATCATTTAGAATTTTACAATGTAGTGGAGAGGTCACATTTAAAATAACCCAAACA-AGTCAA-ACTTTA-TTATTTTGGAATTCAT-TTGAAATATCAAGTAATTCAGTCCTAGTTTACGATCCTTTTTTTTTTTTT--GGTTTGTGATTCT--TATTGAA---CTCTTTGAAACACAGGACTCAGCCCTTTCATTCTTGGTTTCCttatttatatgcttatggtatactattaatacatttgctttcttattgttttatgtatttatAAAAT i chlSab2.chr25 C 0 I 332 s calJac3.chr19 14078233 364 - 49578535 CATTTTATCATTAG----TG----AATTAATAAAATACAGA----AAGGCTCATTGCCCAGTTTTCCCCCGTATTTGGGAACCT--TTCTAAGGGAGTAGGGAAAGCAGCAAATAGACTGGCATCATTTAGAATTTTACGGAGTAATGGAAAGGTCACATTTAAAATAACCCCAAAA-AGTCAA-AACTTA-TTACTTTGGAATTCAT-TTGAAATATCAAGTAATTCAGGCCTCGCTGTTGATTC----TTTTCTTTT--GGTTCGTGATTCT--TACTGAA---CACTTCAAAGCAGAGGATTTGAGACCTTCATTCTTGCTCTCCTTATTTATATGCTTCTGATAAATCGTTAATACATTTGCTTTCttatt-ttttatgta-ttataaaat i calJac3.chr19 I 307 C 0 s mm10.chr1 178688390 321 + 195471971 TCTTCTGCCATTGT----TGGGCAAATTGATAAAATACTGACTGGAAGACTC----------CTTCTCTCATGTTTGGAGGTTT--TTTTAA-GGAGGAGGGGAAACATCATA------------------AATTCCATGGAGTCATAGAGGAAGCAGATTTAAAATGATCCAAAAG-AGTAAATGCCCTA-TTATTTTGGGGCCAATGTTGAAAGA-------------GCCAGGCTTCAGATAT---------------GGTTTATGAATCTCATATTAAAATGCACTTAGAGAGAGAGTGTTTGAGCCCATCCTTCCTGGTTTCCTAATTAGT-CACTGATT--------TTAGTATCTTTGCGTTCTCACTCACTTACaatttaataaaat i mm10.chr1 C 0 C 0 s canFam3.chr7 36261824 309 + 80974532 CCTCCCACCATGAGGAAATA----AATTGGTAAAATATTGA----AAGGCCCCTGGGCCAATTTTCTTCT---TTTGAAGACCT--TTATAAGGGAGGAGAGCAGGCCATATATAGGCTCAGATCATTTAAAATTCTACAGAGTAAT----AGGTAGTATTTAGAATAATCGAAAAAGGGTAAA-ACTTCATTTATTTTGGAGTTAAT-TTGAAATCTTGAGTGATTTAGGCCT---------------------------ATGTCATGATTCT--TACTGAG---CACTTTGAAACAGAGTACTCAGGTCTTTCATTCTTG----------------------------CTATTAAtttattta-------aaatttttatttatttattagag i canFam3.chr7 C 0 C 0 a score=5005.000000 s hg38.chr1_KI270759v1_alt 73923 1 + 425601 A s panTro4.chr1 224822120 1 + 228333871 a i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226179646 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140068912 1 - 143122389 A i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16784271 1 - 229590362 A i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223546706 1 - 227556264 A i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16597689 1 - 220367699 a i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82396715 1 + 85787240 A i chlSab2.chr25 I 332 C 0 s calJac3.chr19 14078597 1 - 49578535 a i calJac3.chr19 C 0 C 0 s mm10.chr1 178688711 1 + 195471971 a i mm10.chr1 C 0 C 0 s canFam3.chr7 36262133 1 + 80974532 a i canFam3.chr7 C 0 I 58 a score=17268.000000 s hg38.chr1_KI270759v1_alt 73924 6 + 425601 TAAACC s panTro4.chr1 224822121 6 + 228333871 taaacc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226179647 6 - 229942017 TAAACC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140068913 6 - 143122389 TAAATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16784272 6 - 229590362 TAAACA i rheMac3.chr1 C 0 I 330 s macFas5.chr1 223546707 6 - 227556264 TAAACA i macFas5.chr1 C 0 I 335 s papAnu2.chr1 16597690 6 - 220367699 taaaca i papAnu2.chr1 C 0 I 327 s chlSab2.chr25 82396716 6 + 85787240 TAAATC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14078598 6 - 49578535 taaaCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178688712 6 + 195471971 taaatt i mm10.chr1 C 0 C 0 e canFam3.chr7 36262134 58 + 80974532 I a score=166716.000000 s hg38.chr1_KI270759v1_alt 73930 51 + 425601 TTTCTTTTAAAATTATTATATAATTTGCAAGTTTCGATAAATTGGAAAATT s panTro4.chr1 224822127 51 + 228333871 tttcttttaaaattattatataatttGCAAGTTTCGATAAATTGGAAAATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226179653 51 - 229942017 TTTCTTTTAAAATTATTATACAATTTGCAAGTTTTGATAAATTGGAAAATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140068919 51 - 143122389 TTTCTTTTAAAATTATTATATAATTTGCAAGTTTTGATAAATTGGAAAATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16784608 51 - 229590362 TTTCttttaaaattattatataatttGCAAGTTTTTATAAATTGGAAAATT i rheMac3.chr1 I 330 C 0 s macFas5.chr1 223547048 51 - 227556264 TTTCTTTTAAAATTATTACATAATTTTCAAGTTTTTATAAATTGGAAAATT i macFas5.chr1 I 335 C 0 s papAnu2.chr1 16598023 51 - 220367699 tttcttttaaaattattatataatttgcaAGTTTTTATAAATTGGAAAATT i papAnu2.chr1 I 327 C 0 s chlSab2.chr25 82396722 51 + 85787240 TTTCTTTTAAAATTATTATATAATTTGCAAGTTTTGATAAATTGGAAAATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14078604 51 - 49578535 TTTCTTTTAAAATTATCATATAAATTGCAATATTTGATAAATTGGAAAATT i calJac3.chr19 C 0 C 0 s mm10.chr1 178688718 50 + 195471971 -ttCTTCTTAACAGAACTCATAATGTAGAGTTTTCAATAAACTGGAGAACT i mm10.chr1 C 0 C 0 e canFam3.chr7 36262134 58 + 80974532 I a score=13192.000000 s hg38.chr1_KI270759v1_alt 73981 5 + 425601 GAAAT s panTro4.chr1 224822178 5 + 228333871 GAAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226179704 5 - 229942017 GAAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140068970 5 - 143122389 GAAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16784659 5 - 229590362 GAAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223547099 5 - 227556264 GAAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16598074 5 - 220367699 GAAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82396773 5 + 85787240 GAAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14078655 5 - 49578535 CTAAT i calJac3.chr19 C 0 C 0 e mm10.chr1 178688768 0 + 195471971 C e canFam3.chr7 36262134 58 + 80974532 I a score=109547.000000 s hg38.chr1_KI270759v1_alt 73986 46 + 425601 GTCCTCggctggtcgcggtggctcatgcctgtaatcccagcacttt s panTro4.chr1 224822183 46 + 228333871 GTCCTCggctgggcgcggtggctcatgcctgtaatcccagcatttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226179709 46 - 229942017 GTCCTCagccgggcgcggtggctcatgcctgtaatcccagcacttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140068975 46 - 143122389 GTCCTCggctgggcgtggtggctcgtgcctgtaatcccagcacttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16784664 46 - 229590362 GTCCTCAgctgggcgtggtggcttacgcctgtaatcccagcacttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223547104 46 - 227556264 GTCCTCAgctgggcgtggtggcttacgcctgtaatcccagcacttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16598079 46 - 220367699 Gtcctcagctgggcatggtggcttacacctgtaatcccagcacttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82396778 46 + 85787240 GTCCTCAgctaggcgcggtggctcacgcctgtaatcccagcacttt i chlSab2.chr25 C 0 C 0 e mm10.chr1 178688768 0 + 195471971 C e canFam3.chr7 36262134 58 + 80974532 I e calJac3.chr19 14078660 0 - 49578535 C a score=173641.000000 s hg38.chr1_KI270759v1_alt 74032 66 + 425601 gggaggccgagacaggtggaccacctgaggtcaggagttcaagaccagcctggcta---agatgctgaa s panTro4.chr1 224822229 66 + 228333871 gggaggccgagacaggtggaccacctgaggtcaggagttcaagaccagcctggcta---agatgctgaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226179755 66 - 229942017 gggaggccaagacgggtggaccacctgaggtcaggagttcaagaccagcctggcta---agatgctgaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140069021 66 - 143122389 gggaggccgagacgggtggaccacctgaggtcaggagttcaagaccagcctggcta---agatgctgaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16784710 66 - 229590362 gggaggctgagacgggtggatcacctgagggcaggaattcaagaccagcctggcta---agatgctaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223547150 66 - 227556264 gggaggctgagacgggtggatcacctgagggcaggaattcaagaccagcctggcta---agatgctaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16598125 66 - 220367699 gggaggctgagacgggtggatcacctgagggcaggaattcaagaccagcctggcta---agatgctaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82396824 66 + 85787240 gggaggccgagacgggtggatcacctgagggcaggaattcaagaccagcctggcta---agatgctgaa i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36262192 63 + 80974532 gggagtccgactcaga------gctcgatcccaggaccccaggaccatctgagccagtcagatgcttaa i canFam3.chr7 I 58 I 176 e mm10.chr1 178688768 0 + 195471971 C e calJac3.chr19 14078660 0 - 49578535 C a score=263785.000000 s hg38.chr1_KI270759v1_alt 74098 114 + 425601 accccgtctctactaaaatcacaaaaattagccaggcatggtggcatgtgcctgtaatcccagctcctcaggaggctgaggcaggagaatcgcttgaacccgggcggcagaggt s panTro4.chr1 224822295 114 + 228333871 accccgtctctactaaaatcacaaaaattagccgggcatggtggcatgtgcctgtaatcccagctcctcagaaggctgaggcaggagaatcgcttgaacctgggcggcagaggt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226179821 114 - 229942017 accccgtctctactaaaaacacaaaaattagccaggcatggtggcatgcacctgtaatcccagctcctcaggaggctgaggcaggagaatcgcttgaacccaggtggcagaagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140069087 114 - 143122389 accccgtctctactaaaatcacaaaaattagccgggcatgctggcgggcgcctgtaatcccagctcctcaggaggctgaggcaggagaatcgcttgaacccgggcggcagaggt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16784776 114 - 229590362 accctgtctctactaaaaacacaaaaattagctgggcatggtggcatgcaactgtcatcccagctactcgggaggctgaggcaggagaatcgcttaaacctgggcagcagaggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223547216 114 - 227556264 accctgtctctactaaaaacaccaaaattagctgggcgtggtggcatgcaactgtcatcccagctactcgggaggctgaggcaggagaatcgcttaaacctgggcagcagaggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16598191 114 - 220367699 accctgtctctactaaaaacacaaaaattagctgggcatggtggcatgcacctgtcatcccagctactcgggaggctgaggcaggagaatcgcttaaacctgggcagcagaggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82396890 114 + 85787240 accctgtctctactaaaaacacaaaaattagccgggcatggtggcatgcacctgtcatcccatctactcgggaggctgaggcaggagaatcgcttaaacctgggcggcagaggt i chlSab2.chr25 C 0 C 0 e mm10.chr1 178688768 0 + 195471971 C e canFam3.chr7 36262255 176 + 80974532 I e calJac3.chr19 14078660 0 - 49578535 C a score=142692.000000 s hg38.chr1_KI270759v1_alt 74212 79 + 425601 tgcagtgggccgagattgtgccattgcactccagcctgggcgacagagcaagactccgtctc---aaaaaaaaaaaaaaaa----a s panTro4.chr1 224822409 78 + 228333871 tgcagtgggccgagattgtgccattgcactccagcctgggcgacagagcaagactccgtctc---aaaaaaaaaaaaaaaa----- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226179935 71 - 229942017 tgcagtgggcttagattgtgccattgcactccagcctgggcgacagagcaagactccgtctc---aaaaaaaaa------------ i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140069201 83 - 143122389 tgcagtgggctgagattgtgccattgcactccagcctgggtgacagagcaagactctgtctc---aaaaaaaaaaaaaaaaaaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16784890 79 - 229590362 tgctgtgagccgagattgcaccactgcactccagcctgggcaacagagcaagactccatctt---aaaaaaaaaaaaaaaa----a i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223547330 81 - 227556264 tgctgtgagccgagattgcaccactgcactccagcctgggcaacagagcaagactccatctt-aaaaaaaaaaaaaaaaaa----a i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16598305 82 - 220367699 tgctgtgagccgagattgcaccactgcactccagcctgggcaacagagcaagactccgtctttaaaaaaaaaaaaaaaaaa----a i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82397004 76 + 85787240 tgctgtgagccgagattgcaccactgcactccagcctgggcagtagagcaagactccgtctt------aaaaaaaaaaaaa----a i chlSab2.chr25 C 0 C 0 s mm10.chr1 178688768 21 + 195471971 TACAGT-----------------------------------------------TTCCTTCCC---AGAGAA--------------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36262255 176 + 80974532 I e calJac3.chr19 14078660 0 - 49578535 C a score=1888.000000 s hg38.chr1_KI270759v1_alt 74291 1 + 425601 G s panTro4.chr1 224822487 1 + 228333871 G i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226180006 1 - 229942017 G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140069284 1 - 143122389 T i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16784969 1 - 229590362 G i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223547411 1 - 227556264 G i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16598387 1 - 220367699 g i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82397080 1 + 85787240 G i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14078660 1 - 49578535 G i calJac3.chr19 C 0 C 0 e mm10.chr1 178688789 0 + 195471971 C e canFam3.chr7 36262255 176 + 80974532 I a score=1361890.000000 s hg38.chr1_KI270759v1_alt 74292 379 + 425601 TCCTCACCTACCCCACCCCAGACATACACCTAATTCATTTCTAATTGAGATTTTACTGTGCTAACAGTCTTTAGTGTGATGAATTAGCATGCCTTTATCTTATAGAGGTATTTGTGAGGATTAGTTAATGAGTCATATATTTCATATGCTTAAGTCACTCCGAGGGAGTCATTTAGGTGTTTA-GAAGCATATTAGTCACTAATTTTGGGACTCTGGAGAC---TTAGTCCATT-TCTGCAGCACCACTGGCCCCGAGGAGTTAACATA----TCCC-TCCATTGCTCATCTGAGAGCCTGGGCAATGACTTGAGA-CACTGGGG-AGAAAAAAAGATTCCATATGAAAAGCAAAGACAGCAGCAGCCATGTCTATATTCAAGGCTGTGGC s panTro4.chr1 224822488 378 + 228333871 TCCTCACCTACCCCACCCCAGACATACACCTAATTCATTTCTAATTGAGATTTTACTGTGCTAACAGTCTTTAGTGTGATGAATTAGCATGCCTTTATCTTATAGAGGTATTTGTGAGGATTAGTTAATGAGTCATATATTTCATATGCTTAAGTCACTCCGAGGGAGTCATTTAGGTGTTTA-GAAGCATATTAGTCACTAATTTTGGGACTCTGGAGAC---TTAGTCCATT-TCTGCAGCACCACTGGCCCCAAGGAGTTAACATA----TCCC-TCCATTGCTCATCTGAGAGCCTGGGCAATGACT-GAGA-CACTGGGG-AGAAGAAAAGATTCCATATGAAAAGCAAAGACAGCAGCAGCCATGTCTATATTCAAGGCTGTGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226180007 378 - 229942017 TCCTCACCTACCCCACCCCAGACATACACCTAATTCATTTCTAATTGAGATTTTACTGTGCTAACAGTCTTTAGTGTGATGAATTAGCGTGCCTTTATCTTATAGAGGTATTTGTGAGAATTAGTTAATGAGTCATACATTTCATATGCTTAAGTCACTCCGAGGGAGTCACTTAGGTGTTTA-GAAGCATATTAGTCACTAATTTTGGGACTCTGGAGAC---TTAGTCCATT-TCTGCGGCACCACTGGCCCCGAGGAGTTAACATA----TCCC-TCCATTGCTCATCTGAGAGCTTGGGCAATGACT-GAGA-CACTGGGG-AGAAAAAAAGATTCCATATGAAAAGCAAAGACAGCAGCAGCCATGTCTACATTCAAGGCTGTGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140069285 377 - 143122389 TCCTCACCTACCCCACCCCAGACATACACCTAATTCATTTCTAATTGAGATTTTACTGTGCTAACAGTCTTTAGTGTGATGAATTAGCATGCCTTTATCTTATAGAGGTATCTGTGAGGATTAGTTAATGAGTCATGTATTTCATACGCTTAAGTCACTCCGAGGGAGTCATTTAGGTGTTTA-GAAGCATATTAGCCACTAATTTTGGTACTCTGGAGAC---TTAGTCCATT-TCTGCAACACCACTGGCCCTGAGGAGGTAACATA----TCCC-TCCGTTGCTCATCTGAGAGCCTGGGC-ATGACT-GAGA-CACTGGGA-AGAAAAAAAGATTCCATATGAAAAGCAAAGATGGCGGCAGCCATGTCTATATTCAAGGCTGTGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16784970 373 - 229590362 TCCTCACCCACCCCACCCCAGACATACACCTAATTCATTGGTAATTGAGATTTTACTGTGCTAACAGTCTTTAGTGTGATGAATTAGCATGCCTctatcttatagaggtatttgtgagga----ttaatgagtcatatatatcatatgcttaAGTCACACCGAGGGAGTCATTTAGGTGTTGA-GAAGCATATTAGTCACGACTTTTGGGACTCTGGAGAC---TTGGTCCATT-TCTGCTGCACCACTAGCCCCAAGGAGTTAACATA----TCCC-TCTGTTGCTCATCTGAGAGCCTGGGC-ATGACC-GAGA-CACTGGGG-TGAAAAACAGATTCCATATGAAAAGCAAAGACAGCAGCATCCACATCTGTATAGAAGGCTGTGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223547412 374 - 227556264 TCCTCACCCACCCCACCCCAGACATACACCTAATTCATTGGTAATTGAGATTTTACTGTGCTAACAGTCTTTAGTGTGATGAATTAGCATGCCTctatcttatagaggtatttgtgagga----ttaatgagccatatatatcatatgcttaAGTCACACCGAGGGAGTCATTTAGGTGTTGA-GAAGCATATTAGTCACGACTTTtgggactctggagac---ttggtccatt-tctgctgcaccactagccCCAAGGAGTTAACATA----TCCC-TCTGTTGCTCATCTGAGAGCCTGGGC-ATGACC-GAGACCACTGGGG-TGAAAAACAGATTCCATATGAAAAGCAAAGACAGCAGCATCCACATCTGTATAGAAGGCTGTGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16598388 373 - 220367699 tcctcacccaccccaccccagacaTACACCTAACTCATTTGTAATTGAGATTTTACTGTGCTAACAGTCTTTAGTGTGATGAATTAGCATGCCTCTATCTTATAGAGGTATTTGTGAGGA----TTAATGAGTCATATATATCATATGCTTAAGTCACGCCGAGGGAGTCATTTAGGTGTTGA-GAAGCATATTAGTCACGACTTTTGGGACTCTGGAGAC---TTGGTCCATT-TCTGCTGCACCACTGGCCCCAAGGAGTTAACATA----TCCC-TCTGTTGCTCATCTGAGAGCCTGGGC-ATGAAC-GAGA-CACTGGGG-TGAAAAACAGATTCCATATGAAAAGCAAAGACAGCAGCATCCACATCTGTATAGAAGGCTGTGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82397081 373 + 85787240 TCCTCACCTACCTTACCCCAGACATACACCTGATTCATTTGTAACTGAGATTTTACTGTGCTAACAGTCTTTAGTGTGATGAATTAGCATGCCTCTATCTTATAGAGGTATTTGTGAGGA----TTAATGAGTCATATATTTCATATGCTTAAGTCACACTGAGGGAGTCATTTAGGTGTTTA-GAAGCATATTAGTCATGACTTTTGGGACTCTGGAGAC---TTGGTCCATT-TCTGCTGCACTACTGGCCCCGAGGAGTTAACATA----TCCC-TCTGTTGCTCATCTAAGAGCCTGGGC-ATGACC-GAGA-CACTGGGG-AGAAAAACAGATTCCATATGAAAAGCAAAGACAGCAGCATCCACATCTGTATAGAAGGCTGTGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14078661 378 - 49578535 TCCTCACCTACCCCACCCCAGACATATACCTAATTAATTTCTAATTGCGATTTTACTGTGCTAACAGCCTTTACCGTGATGAATtggcctgcctttatcttatagaggtatttgtgaggatcagttaatgagtgatgtaGTTCATATGCCTGAGTCACTCCGAGGGAATAATTTAGGTGTTTA-GAAGCATGTTAGCCGCTCCTTCTGCGACTCTGGAGAC--TTTGGTACATT-TCCGCCGCACCACTG--TCCGAGGAGTTCACGTATCCTTCCT-TCCACTGCTCAGCTGAGAGC-TGGGC-ATGACC-GAGA-CACTGGGG-AGAAGAA-AGACTTCATCTGAAAAGCAAAGGCGGCAGCAGCCACGTCGATATCCCAGGCTGCGGC i calJac3.chr19 C 0 I 293 s mm10.chr1 178688789 354 + 195471971 -----------CTCACCCTGGACAT---CCTAATTAATATCCAATCGAGATGCTTCTGTGCTAACAGTCTTTAGCGTGACAAATTAGCCTGGTTCTGTCTTAGAAAGATATTTGTGAGGATTA-CTAATGAG---TGTATTTCATATGCCTAAGTTCCTCCCGGGGAGTAATTTGGGTGTTCAGGAAGTATGTTAGACACCATTTTGGGGATTGTGGAGACTATTTAATGTCTTAACTATAGCACCCATGGCCTCAGAGAGTTAGCCCA----TCCTGTACATAGCTCAGGTGAGTGCCTGGGA-AAAATG-GAGA-CACTGGGGAAGGAGCAGGGAAACCTTATGAA------------CAGCAGCCATGTCTGCACTGATGGCTGTGAC i mm10.chr1 C 0 C 0 s canFam3.chr7 36262431 350 + 80974532 TCCTTACCCACCCCACCCCAGGCACACACCTAATTGCTTTCAAATTGAGATTTGACTGTGCT----GTCTTTAGCGTGACAAATTAGCGTCCCTCGATCTTATGGAGGTATTTGTGGGGATTAGTtaatgagtcatatatttcatgtgtctaagtcattcccagggagtaatttaggtgtttaggacacatattagtcaccatttttaggactctggagaccatttagtgcatt-actgccacactagtggcctcaaagggttaacacg----tccc-ttc--------------aGC---AGC-TTACCT-GGGA-CCCTCGGG-AGAAAAAAAGGTGTCATTTGAGAAGCAA----------ACCCACGTCTACATTCAAGGCTGTGAC i canFam3.chr7 I 176 C 0 a score=2538628.000000 s hg38.chr1_KI270759v1_alt 74671 827 + 425601 TGGGAGTTGTCTAATTAGATGACTCATCTGAGCCAGCCTGATG------GTTTCCATCACCTTCACTAGGCTGCTCCCCACCGTCC-ATTAGGCTGCAAGGCGCTGCGTCGCCAGGGAGGTTGACCCCACCTGCTTGTTCATGACGTGCTCCCTTTTGGTTCAAGC-AACAGAC-------ATGGTTGGAAGCAAGACTAGAAGGCAGCCCTCAAGAAttacaaatgacaaaactgaggcccaggcctgtcaggcgacctgtgccaggtcacac------ggctaggaagtgacagcgatgggagtcaaacacaggtctcccatgca------tttacccctgcccctgcccca-gcccctctCTGGAGGGAAGGGGACCGATTCCTCAGATAGGTCAGATTTGCAGGCCTCCTGGGGAGGGTTACCCACCGCACACACTCCTGACGTGATTTCTTTGGGG-----------GCAATTTGGGGTGCCTAGGATTTCCAAGCCAGGTTTCTCATCTTATTCCTCTGCATAGCAGTTTAGAACTCAATGCGCTGTATTGTATCTCCTCCCTGGGAGGTGGGGAGGTTGGTGGGGTTAAAACCGAAAGACACTGATGGGCCaaaaagatg---aaaaaaaaaaaaaaaaa-----aaaGGCTGTGTGGGC-AATGCTGCCATCTAGTGAGACATACTTTAGCCAACCTAAGAAGCTGAGTGGTCCTGGTAGAATCCCACCGTAAAGTATTTCGATGTCCTAAGCTTCATCAAAGGAGACAGGG-----CCATCTCCCTGTCAGTAGCGTGGTC----TT----TAACACAGTAGTGAAGGGTTAAATTCAGTGTCCTAACATCTGTCCTTC--AGAAAGGACCCGTGGCCTGA s panTro4.chr1 224822866 824 + 228333871 TGGGAGTTGTCTAATTAGATGACTCATCTGAGCCAGCCTGATG------GTTTCCGTCACCTTCACTAGGCTGCTCCCCACCGTCC-ATTAGGCTGCAAGGCGCTGCGTCGCCAGGGAGGTTGACCCCACCCGCTTGTTCATGACGTGCTCCCTTTTGGTTCAAGC-AACAGAC-------ATGGTTGGAAGCAAGACTAGAAGGCAGCCCTCAAGAAttacaaatgacagaactgaggcccaggcctgtcaggcgacctgtgccaggtcacac------ggctaggaagtgacagcgatgggagtcaaacacaggtctcccatgca------tttgcccctgcccctgcccca-gcccctctCTGGAGGGAAGGGGACCGATTCCTCAGGTAGGTCAGATTTGCAGGCCTCCTGGGGAGGGTCACCCACCGCACACGCTCCTGACGTGATTTCTTTGGGG-----------GCAATTTGGGGTGCCTAGGATTTCCAAGCCAGGTTTCTCGTCTTATTCCTCTGCATAGCAGTTTAGAACTCAATGCGCTGTATTGTATCTCCTCTTTGGGAGGTGGGGAGGTTGGTGGAGTTAAAACCAAAAGACACTGATGGGCCAAAAAAATT---GAAAAAAAAAAAAAAAA--------GGCTGTGTGGGC-AATGCTGCCATCTAGTGAGACATACTTTAGCCAACCTAAGAAGCTGAGTGGTCCTGGTAGAATCCCACCGTAAAGTATTTCGACGTCCTAAGCTTCATCAAAGGAGACAGGG-----CCATCTCCCTGTCAGTAGCATGGTC----TT----TAACACAGTAGTGAAGGGTTAAATTCAGTGTCCCAACATCTGTCCTTC--AGAAAGGACCCGTGGCCTGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226180385 812 - 229942017 TGGGAGTTTTCTAAGTAGATGACTCATCTGAGCCAGCCTGATG------GTTTCCATCACCTTCTCTAGGCTGCTCCCCACCATCC-ATTAGGCTGCGAGGCGCTGCGTCGCCGGGAAGGTTGACCCCACCCGCTTGTTCATGACATGCTCCCTTTTGGTTCAAGC-AACAGAC-------ATGGTTGGAAGCAAGACTAGAAGGCAGCCCTCGTGAAttacaaatgacaaaactgaggcccgggcctgtcaggcgacctgtgccaggtcacac------g--------------gcgatgggagtcaaacacaggtctccCACGCA------TTTA------CCCCTGCCCCA-GCCCCTCTCTGGAGGGAAGGGGACCGACTCCTCAGATAGGTCAGATCTGCAGGCCTCCTGGGGAGGGTCACCCACTGCACACACTCCTGACGTGATTTCTTTGGGG-----------GCAATTTGGGGTGCCTAGGATTTCCAAGCCAGGTTTCATGTCTTATTCCTCTGCATAGCAGTTTAGAACTCAATGCGCTGTATTGTATCTCCTCCCTGGGAGGTGGGGAGGTTGGTGGGGTTAAAACCGAAAGACACTGATGGGCCaaaaaaaga---aaaaaaaaaaaaaaaaaaaaaaaaaaGCTGTATGGTC-AATGCTGCCATCTAGTGAGACATACTTTAGCCAACCTAAGTAGCTGAATGGTCCTGGTAGAATCCCACCATAAAGTATGTCAATGTCCTAAGCTGCATCAAAGGAGACAGGG-----CCATCTCCCTGTCCGTAGCGTGGTC----TT----TAACAGAGTAGTGAAGGGTTAAATTCAGTGTCCCAACATCTCTCCTTC--AGAAAGGACCTGTGGTCTGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140069662 819 - 143122389 TGGGAGTTGTCTAATTAGATGACTCATCTGAGCCAGCCTGATG------GTTTCCATCACCTTCACTAGGCTGCTCCCCACCGTCC-ATTAGGCTGCCAGGCGCTGCGTCGCCGGGAAGGTTGACCCCACCTGCTTGTTCATGACATGCTCCCTTTTGGTTGAAGCAAACAGAC-------ATGGTTGGAAGCAAGACTAGAAGGCAGCCCTCATGAAttacaaatgacaaaactgaggcccaggcctgtcaggcgacctgtgccaggtcacac------ggctaggaagtgacagccatgggagtcaaacacaggtctcccatgca------tttg------cccctgcccca-gcccctctCTGGAGGGAACGGGACCGATTCCTCAGATAGGTCAGATTTGCAGGCCTCCTGGGGAGGGGCACCCACCGCACACACTCCTGACGTGATTTCTTTGGGG-----------GCAATTTGGGGTGCCTAGGATTTCCAAGCCAGGTTTCATGTTTTACTCCTCTGCATAGCAGTTTAGAACTCAATGCGCTGTATTGTATCTCCTCCCTGGGAGGTGGGGAGGTTGGTAGGGTTAAAACCGAAAGACACTGATGGGCCaaaaaaaaa---tgaaaaaaaaaaaaaaa--------GGCTGTGTGGGC-AATGCTGCCATCTAGTGAGACATACTTTAGCCAACCTAAGAAGCTGAATGGTCCTGGTAGAATCCCACCATAAAGTATTTCAATGTCCTAAGCTTCATAAAAGGAGACAGGG-----CCATCTCCCTGTCAGTAGCGTGGTC----TT----TAACAGAGTAGTAAAGGGTTGAATTCAGTGTCCCAACATCTCTCCTTC--AGAAAGGACCCATGGCCCAA i nomLeu3.chr5 C 0 I 2 s rheMac3.chr1 16785343 814 - 229590362 TGGGAGTTGTCTAATTAGATGACTCATCTGAGCCAGCCTGATG------GTTTCCATCACCTTCACTAGGCTGCTCCCCACCATCC-ATTAGGCTGCGAGGCACTGTG--GCTGGGAAGGTTGACCCCACCCGCTTGTTCATGACGTGCTCCCTTTTGGTTCAAGCAAACAAAC-------ATGGTCGGAAGCAAGACTAGAAGGCAGCCCTCATGAAttacaaatgacaaaactgaggtccaggcctgtcaggtgacctgtggcaggtcacgt------ggctgggaagtgacagcagtgggagtcaaactcaggtctcccgtgca------cctg------cccctgcccct-tcccctCTCTGGAGGGAAGGGCACCCATTCCTCAGATAGGTCAGATTTGCAGGCCTCCGGGAGAGGGTCACCTACCACACACACTCCTGATGTGATTCCTTTGGGG-----------GCAATTTGGGGAGCCTAGGACTTCCAAGCCGGGTTTCATGTCTTATTCCTCTGCACAGCAATGTAGCACTCAATGCACTGTGTTGTATCTCCTCCCTGGGAGGTGTGGAGGTTGGTGGGGTTAAAACCGAAAGACAGAGATAGGTCAAAAAATGG---------AAAAAAAAAAA-----AAGGGCTGTGTGGGCAAATGCTGCCATCTAGTGAGACATACTTTGGCCAACCTAAGAAGCCGAATGGCCCTGGTAGAATCCCGCCATAAAGTATTTCAATGTCCTAAGCTTCATAAGAGGAGACAGGC-----CCATCTCCCTGTCAGTAACATGGTC----TT----TAACAGAGTAGTGAAGGGTTAACTTCGGTGTCCCAACATCTCTCCTTC--AGCAAGGACCCGTGGCTGA- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223547786 826 - 227556264 TGGGAGTTGTCTAATTAGATGACTCATCTGAGCCAGCCTGATG------GTTTCCATCACCTTCACTAGGCTGCTCCCCACCATCC-ATTAGGCTGCGAGGCACTGTG--GCCGGGAAGGTTGACCCCACCCGCTTGTTCATGACGTGCTCCCTTTTGGTTCAAGCAAACAAAC-------ATGGTCGGAAGCAAGACTAGAAGGCAGccctcatgaattacaaatgacaaaactgaggtccaggcctgtcaggtgacctgtggcaggtcacgt------ggctgggaagtgacagcagtgggagtcaaactcaggtctcccgTGCAcctgcccctg------cccctgcccct-gcccctCTCTGGAGGGAAGGGCACCCATTCCTCAGATAGGTCAGATTTGCAGGCCTCCGGGAGAGGGTCACCCACCACACACACTCCTGATGTGATTCCTTTGGGG-----------GCAATTTGGGGAGCCTAGGACTTCCAAGCCGGGTTTCATGTCTTATTCCTCTGCACAGCAATGTAGCACTCAATGCACTGTGTTGTATCTCCTCCCTGGGAGGTGTGGAGGTTGGTGGGGTTAAAACCGAAAGACAGAGATAGGTCaaaaaatgg---aagaaaaaaaaaaaaaa-----aaGGGCTGTGTGGGCAAATGCTGCCATCTAGTGAGACATGCTTTGGCCAACCTAAGAAGCCGAATGGCCCTGGTAGAATCCCGCCATAAAGTATTTCAATGTCCTAAGCTTTATAAGAGGAGACAGGC-----CCATCTCCCTGTCAGTAACATGGTC----TT----TAACAGAGTAGTGAAGGGTTAACTTCGGTGTCCCAACATCTCTCCTTC--AGCAAGGACCCGTGGCTGA- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16598761 823 - 220367699 TGGGAGTTGTCTAATTAGATGACTCATCTGAGCCAGCCTGATG------GTTTCCATCACCTTCACTAGGCTGCTCCCCACCATCC-ATTAGGCTGCGAGGTACTGCG--GCCGGGAAGGTTGACCCCACCCGCTTGTTCATGACGTGCTCCCTTTTGGTTCAAGCAAACAAAC-------ATGGTCGGAAGCAAGACTAGAAGGCAGCCCTCATGAAttacaaatgacaaaactgaggtCTAGGCCTGTCAGGTGACCTGTGGCAGGTCACGT------GGCTGGGAAGTGACAGCAGTGGGAGTCAAACTCAGGTCTCCCGTgca------cctg------cccctgcccct-gcccctctctGGAGGGAAGGGCACCCATTCCTCAGATAGGTCAGATTTGCAGGCCTCCTGGAGAGGGtcacccaccacacacactccTGATGTGATTCCTTTGGGG-----------GCAATTTGGGGAGCCTAGGACTTCCAAGCCGGGTTTCATGTCTTATTCCTCTGCACAGCAATGTAGCACTCAATGCACTGTGTTGTATCTCCTCCCTGGGAGGTGTGGAGGTTGGTGGGGTTAAAACCGAAAGACAGAGATaggtcaaaaaatgaaaaaaaaaaaaaaaaaaaaa-----aaaggctgtgtgGGCAAATGCTGCCATCTAGTGAGACATGCTTTGGCCAACCTAAGAAGCCGAATGGCCCTGGTAGAATCCCGCCATAAAGTATTTCAATGTCCTAAGCTTCATAAGAGGAGACAGGG-----CCATCTCCCTGTCAGTAACATGGTC----TT----TAACAGAGTAGTGAAGGGTTAAATTCGGTGTCCCAACATCTCTCCTTC--AGCAAGGACCCGTGGCTGA- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82397454 820 + 85787240 TGGGAGTTGTCTAATTAGATGACTCATCTGAGCCAGCCTGATG------GTTTCCATCACCTTCACTAGGCCGCTCCCCACCATCC-ATTAGGCTGTGAGGCACTGCATCGCCGGGAAGGTTGACCCCACCCGCTTGTTCATGACGTGCTCTCTTTTGGTTCAAGCAAACAAAC-------ATGGTCGGAAGCAAGACTAGAAGGCAGccctcatgaatcacaaatgacaaaactgaggtccaggcctgtcaggtgacctgtggtaggtcacat------ggctaggaagtgacagtgatgggagtcaaactcaggtcttctatgca------cctg------cccctgcccct-gcccctctctgGAGGGAAGGGCACCCATTCCTCAGATAGGTCAGATTTGCAGGCCTCCTGGAGAGGGTCACCCACCACACACACTCCTGACATGATTCCTTTGGGG-----------GCAATTTGGGGAGCCTAGGACTTCCAAGCTGGGTTTCATGTCTTATTCCTCTGCACAGCAGTGTAGAACTCAATGCACTGTGTTGTATCTCCTCCCTGGGAGGTGGGGAGGTTGGTGGGGTTAAAACTGAAAGACACAGATAGGTCaaaaaatga----aaaaaaaaaaaaaaaa-----aaaaGCTGTGTGGGCAAATGCTGCCATCTAGTGAGGCATGCTTTGGCCAACCTAAGAAGCCGAATGGCCCTGGTAGAATCCCGCCATAAAGTATTTCAATGTCCTAAGCTTCATAAAAGGAGACAGGG-----CCATCTCCCTGTCAGTAACATGGTC----TT----TAACAGAGTAGTGAA-GGTTAAATTCGGTGTCCCAACATCCCTCCTTC--AGCAAGGACCCGTGGCTGA- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14079332 785 - 49578535 TGGGAGTTTTTGAATGAGCTGACTCATCTGAGCCAGCCTGACG------GTGTCCATCG-----------------CCCACTGTCCTGTCAGGCTG--AGGCGCCGTGTCGCCAGGAAGATTGACCCCATCTGCTTGTTCATGACATGCTCCCTTTTTGTTCAACCAAACAGAC-------ATGGCTGGAAGCAAGACTAGAAGGCAGccttcatgaattacaaatgacagaaac-aagcccaggcctgtcgggtgagctgtgtgaggtcacac------cgctaggaagggacggtgatgggagtcaaacgcaggtctcctgtgcg------ctgg------ctgctgcccca-gccactctCTGGCGGAAGGGG--CCCGTTCCTCAGATGGGTCAGATTTGCAGCCCTGCCTGGGAGGGCTGCCCACTGCACACACTCCTGCCGTGATTTCTTT-GGG-----------GCAATCTGGGGTGACTCGGCTTTCCAAGCCAGGTGGCAAGCTTTAATCCTCTGCATAGAAGTTTAGAACTGGATGCACTGT-TTCTAGCTCCTCCCTGGGAGGTGGGGAAGTTGGTGGGGTTAAAACTGAAAGACACAGATGGGTCAAAAGATGA------------------AA-----CAAGGCTGTGTGAGC-AATGCTGCCATCTAGTGAGAGATGCTCCAGCC-ACCCGGGAAGCTTAATGGTCCCGCTAGGATCCCACCGTCAAGTATTTCAATGTCCTGAGCTTCGT-AAATGACACAGGG-----CCATGGCTCTGTCAGGAATGAGGTC----TTTGTATGACAGAGCAG-GAAGGTTTCAATTCAGCGTCCCCACATCTCTCCTTT--AGAAGGGACCCGCGTCCTGA i calJac3.chr19 I 293 C 0 s mm10.chr1 178689143 764 + 195471971 CAGAACTTGTCTAGTGGCAGGACCAATCTAAGACAGCCTGGTA------GCTTCCAGCATCGTGGCAGGGCTGGCTCCTACTGTGG-ATGCTGCAGAGAAGAACAGGATGGAAGGGAGGACCAGGCCCATCAGCTTGTTCATA-------CACTATTGGTTACAGCAA-------------ATCACAGGAACCAGGCAT--------GCCCTCGTGAGttataggtagcatgacccagactcagatgtgttaactgacctgcccaaggtcaccttgctcgggctcagacatggcagagatgga---cagatgcaggtctccTATAAT------CTTG------TTTGCGTTTCT-ACCACTTTTATGAAAGAAGGAGGCCACTTCTGTAAGTTGACCACAAAGGAGACCC---------AAGCCACCCGAAGCACACACTATTG-TACGATTTCTTTGGGATGCTTCTCTATGCAACTAGA-------AGGTTTTCC---------------TTGTGTTGCTCTGCACAAAAGTATGGACATAAATGCTTCGTGTTGATGTTCTTCATTGCAAGGTGGAGAGGCTGGTGGGGCTGAAG-GGTGAGGCAGACCTGGGCCCAAAAAATT-----------------CAG-----AGAGGCCTCGTAAGC-AATGCTGCCATCTAGTGAGGCGAACATTAGCTTACCTAAGAGG-----TGGACTTAGTAGAATTGGGT--GAAAATGTTTTAATTTCCCAAGGAGAGTGTGAGGAAACAAAA-----CTCTTTCATCATCAATTGGGAGACCAGGGTT----TGACAGGGTGGCATATGTTTAAATTGACTTTTCCAACAAAAGTCTTTTGGGGAAAGACTTTGTTGTT--- i mm10.chr1 C 0 C 0 s canFam3.chr7 36262781 804 + 80974532 ---CACTTTTCTAATTGCATGATGAATCTGAACCAATCTGACGGTGACAGTTTCCATCACCTTAGCAATGCTGGAGTCCTTGGTCC-CCGTGGATT--GGGGACTGTACCAGTGGGAAGATGGAGCCCGTTACTCTGTTCATGACATGCTTCCTTTTTATGAAAGCAAACAGACCTCTGATACCAATGGAAGCAAGACAGGCAGGCTGCCCTGGGGAAttagagacgacag-accgaagcccagaaatgtcaagtgacctgtccaaggtcacac------cactaggaaatgccggagctgggattcaaacac-tgtttcctgcaca------cttgt-----cccctgcccctcaccaccctgcttAAGGCAGGGG-CCAGTTCCTCAGATTGCTCAGACACCCAGACTCCCTGAGGAGGGACACCCACAGCACATCCTACAAAC---ACTGCTTT-CAG-----------ACACTTTGGTGTTGCCAGGATTTCCAAGTCAGATCTCATGCTGTGCGGCTATGCTTAACTGTGTAGA--TCAATGCCCC-CGTTCCATTTTCTCACTGGGAGGTGGGGAGGCTGGTGGGGGACAAAGCTTGAGAAAAAGATGGGCCACAAAAAAA--CCCCAAACCCCAAACAAA-----AAAGGCTGTGTAAGC-AATGCTGCCATCTAGTGAGATGTACTTTGGCTTACCCAAGAGGTAGA----TACT--TAGACTCTCATCATAAATTAATT-------CCAAGATTAATAAAAGAAAATAGGGTCATTTCATTTCCTTGTCAATAATGT--------CT----TCGCAGAATAATATATGTTCAAATTCATTGTCCTAATACATATCCTTG--CAAAAGGACCTGA------- i canFam3.chr7 C 0 C 0 a score=224654.000000 s hg38.chr1_KI270759v1_alt 75498 102 + 425601 ACAGATCTTCTGTGAGAATGGAGCTTGGTTTTGGCCTGGTAGAAAGACCACACAGATCTGCATGTGA----GTGCTGGCTCACCTGCTTAGTAGCTGAGGAATGT------------------------T s panTro4.chr1 224823690 102 + 228333871 ACAGATCTTCTGTGAGAATGGAGCTGGGTTTTGGCCTGGTAGAAAGACCACACAGATCTGCATGTGA----GTGCTGGCTCACCTGCTTAGTAGCTGAGGAATGT------------------------T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226181197 105 - 229942017 ACAGATCTTCTGTGAGAATGGAGCTTGGTTTTGACCTGGTAGAAAGACCACACAGATCTGCATGTGA----ATGCTGGCTCACCTGCTTAGTAGCTGAGAAATGT---------------------TTGT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16786157 108 - 229590362 ACAGGTCTTCCGTGAGGATGGAGCTTGGTTTCAGCCTGGTAGAAAGACCACACAGATCTGCGTGTCA----GTTCTGGCTCACCTACCGATGGGCTGAGGAATGT------------------ttgttgt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223548612 126 - 227556264 ACAGGTCTTCCGTGAGGATGGAGCTTGGTTTCAGCCTGGTAGAAAGACCACACAGATCTGCGTGTCA----GTTCTGGCTCACCTACCGATGGGCTGAGGAATGTttgttgttgttgttgttgttgttgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16599584 120 - 220367699 ACAGGTCTTCCGTGAGGATGGAGCTTGGTTTCGGCCTGGTGGAAAGACCACACAGATCTGCATGTCA----GTTCTGGCTCACCTACCGATGGGCTGAggaatgt------ttgttgttgttgttgttgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82398274 114 + 85787240 ACAGGTCTTCCGTGAGGATGGAGCTTGGTTTCGGCCTGGTAGAAAGACCACACAGATCTGCATGTCA----ATTCTGGCTCACCCACCGATGGGCTGAGGAATGT------------ttgttgttgttgt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14080117 104 - 49578535 ACAGGGTCCCTGTGAG--TGGAGCT-GGTTTTGGCGTGGTAGAAAGCCcacacagatctgcg-gtga----attccggctcacctacttactagctgAGGCATGG------------------TGGTGGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178689907 72 + 195471971 GCAG-TCTTCTGGGGG---------------------------------AGGCAGATCTGCTTAACACAGTATTCTGGCTTGTTTATCTATGAGCTGAGCAATAT------------------------T i mm10.chr1 C 0 C 0 s canFam3.chr7 36263585 102 + 80974532 ATGGATCTCTAGTATAAATGGAACTCTGTTCTGGCCTCACAGAAAGAGCACTCTGATCAGCGTGTGA----ACTGCGCCTCACCTGCTTATGAGCTGAGTGACAT------------------------T i canFam3.chr7 C 0 I 270 e nomLeu3.chr5 140070481 2 - 143122389 I a score=14941.000000 s hg38.chr1_KI270759v1_alt 75600 6 + 425601 TGTTGT s panTro4.chr1 224823792 6 + 228333871 TGTTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226181302 6 - 229942017 TGTTGT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16786265 6 - 229590362 tgttgt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223548738 6 - 227556264 tgttgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16599704 6 - 220367699 tgttgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82398388 6 + 85787240 tgttgt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14080221 6 - 49578535 GGCTGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178689979 6 + 195471971 TGCTAT i mm10.chr1 C 0 I 219 e canFam3.chr7 36263687 270 + 80974532 I e nomLeu3.chr5 140070481 2 - 143122389 I a score=98382.000000 s hg38.chr1_KI270759v1_alt 75606 43 + 425601 TGttgttttaattgtggtaaaatatgcctcatac-aaaaaatgt s panTro4.chr1 224823798 43 + 228333871 TGttgttttaattgtggtaaaatatgcctcatac-aaaaaatgt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226181308 43 - 229942017 TGttgttttaattgtggtaaaatatacctcatac-aaaaaatgt i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16786271 44 - 229590362 tgttgttttaattgtggtaaaatatgcctcatacaaaaaaatgt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223548744 44 - 227556264 tgttgttttaattgtggtaaaatatgcctcatacaaaaaaatgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16599710 44 - 220367699 tgttgttttaattgtggtaaaatatgcctCATACaaaaaaaTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82398394 44 + 85787240 tgttattttaattgtggtaaaatatgcctcatacaaaaaaatgt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14080227 43 - 49578535 TGttgttttaattgtggtaaaatatgcatcatacaaaaaactg- i calJac3.chr19 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36263687 270 + 80974532 I e nomLeu3.chr5 140070481 2 - 143122389 I a score=523995.000000 s hg38.chr1_KI270759v1_alt 75649 194 + 425601 gtcatctgaatcatttttaagtgtacagtt-catcaagcttgtccaacccgcagcctgcagtctacatgaggcccaggatggctttgaacgca-gcccaacacgagttcgtaaattttcttaaaacattgcgagatttttttggtgttttctttttgttttttaactcatcagctatcattagtgtcagtgttttt s panTro4.chr1 224823841 194 + 228333871 gtcatctgaatcatttttaagtgtacagtt-catcaagcttgtccaacccgcagcctgcaggctacatgaggcccaggatggctttgaacgca-gcccaacacgagttcgtaaattttcttaaaacattacgagatttttttggtgttttctttttgttttttaactcatcagctatcattagtgtcagtgttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226181351 194 - 229942017 gtcatctgaatcatttttaagtgtacagtt-catcaagcttgtccaacccgcagcctgcaggctacatgaggcccaggatggctttgaacgca-gcccaacacaagttcgtaaattttcttcaaacattgtgagatttttttggtgatttctttttgttttttaactcatcagctatcattagtgtcagtgttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140070483 194 - 143122389 GTcatttgaatcatttttaagtgtacagtt-catcaagcttgtccaacctgcagcctgcaggctacatgaggcccaggatggctttgaacgca-gcccaacacaagttcgtaaattttctcaaaacattgcgagatttttttggtgatttctttttgttttttaactcatcagctatcattagtatcagtgttttt i nomLeu3.chr5 I 2 C 0 s rheMac3.chr1 16786315 194 - 229590362 gtcatttgaatcatgtttaagtgtgcagtt-catcaagcttgtcctgcccgcagcctgcaggctacgtgaggcccaggatggctttgaaaaca-gcgcaacgcaagttcgtgaattttcttaaaatgtgatgggatgtttttggtgatttctttttgcgttttaactcatcagctgtcattagtgtcagtgttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223548788 194 - 227556264 gtcatttgaatcatgtttaagtgtgcagtt-catcaagcttgtcccgcccgcagcccgcaggctacgtgaggcccaggatggctttgaaaaca-gcgcaacacaagttcgtgaattttcttaaaatgtgatgggatgtttttggtgatttctttttgtgttttaactcatcagctgtcattagtgtcagtgttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16599754 194 - 220367699 GTCATTTGAATCGtgtttaagtgtgcagtt-catcAAGCTTGTCCCGCCCGCAGCCTGCAGGCTACGTgaggcccaggatggctttgaaaaCA-GCGCAACGCAAGTTCgtgaattttcttaaaatgtgatgGGATGTTTTTGgtgattttcttttgtgttttaactCATCAGCTGTCATTAGTGTCAGTGTTTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82398438 195 + 85787240 gtcctttgaatcgtgtttaagtgtgtagtt-catcaagcttgtcccgcgcgcagcctgcaggctacgtgaggcccaggatggctttgaatgcaggcccaacacaagttcgtgaattttcttaaaacgtgatgggatgtttttggtgatttctttttgtgttttaactcatcagctgtcattagtgtcagtgttttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14080270 193 - 49578535 gtcattctaatcatctttaagtgtacagttcCATcaagcgtgtccaagccacagcccg-gggccac-tgagactggggatggctttggataca-gcccaataccagtctgtaatctttcttaagacattgtgatacctttttggtgatgctttttccctttttagttcctcagttatcattagtgtcagtgttttt i calJac3.chr19 C 0 I 1463 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36263687 270 + 80974532 I a score=1161886.000000 s hg38.chr1_KI270759v1_alt 75843 519 + 425601 taagtgtggcctaagacagttcttcttcttccaatgtggcccagggaagccgaaagattggacacccctgactcttccatggcattaggtacattgacatgatgtgcagccatcaccaccatccatccacc--------------------------------------------------------------------tccagaatactctgcatctccccaaactgcaactccacaccctttcaacactcact---gcccattctccctcccaccagcccctggcaaacaccattccactttgtttccgtgaatctgactgctctatgtacctcatataagtgggatcacacagaacttcttctctggttaatggtctgttgcacttggcataatgtcctcaagtttcatccgtattgtgtcatatgtcagaatttccttccttttaagggctgagtagtatgctgctgtatgtatataccacattttgtttatccattaatgtatcaacattgagttgcttccatctcttggttcttgtgaataattctgctgtgaacatgggtatacacatgtttctttgaaacct s panTro4.chr1 224824035 516 + 228333871 taagtgtggcctaagacagttcttcttc---caatgtggcccagggaagccaaaagattggacacccctgactcttccatggcattaggtacattgacatgatgtgcatccatcaccaccatccatccacc--------------------------------------------------------------------tccagaatgctctgcatctccccaaaccgcaactccacaccctttcaacactcact---gcccattctccctcccaccagcccctggcaaccaccattccactttgtttccgtgaatctgactgctctatgtacctcatataagtgggatcacacagaacttctcctttggttaatggcctattgcacttggcataatgtcctcaagtttcatccgtattgtgtcatatgtcagaatttccttccttttaaaggctgaatagtatgctgctgtatgtatataccacattttgtttatccattaatgtatcaacattgagttgcttccatctcttggttcttgtgaataattctgctgtgaacatgggtgtacacatgtttctttgaaacct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226181545 514 - 229942017 taagtgtggcctaagacagttcctcttcttccaatgtggcccagggaagccgaaagattggacacccctgactcttccacggcattaggtacattcacatgacatgcagccatcgcca----ccatccacc--------------------------------------------------------------------tccagaacgctctgcatctccccaaactgcaactcctcaccctttcaacactcact---gcccattctccatcccaccagcccctggcaaccaccattccacttcgtctccgtgaatctggctgctccatgtccctcatataagtgggatcacacagaacttctcctttggttaatggcctattgcacttggcataatgtcctcaagtttcatccgta-tgtgtcatatgtcagaatttccttccttttaaaggctgaatagtatgctgctgtatatatataccacattttgtttatccattaaggtatcaacattgagttgcttccacctcttggttcttgtgaataattctgctgtgaaaatgggtgtacacgtgtttctttgagacct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140070677 518 - 143122389 taagtgtggcctaagatggttcttcttcttcaaatgtggcccagggaagccgaaagattggacatccctgactcttccatagcattaggtacattcacatgatgtgcagccatcacca----ccatccacc--------------------------------------------------------------------tccagaacgctctgcatctccccaaactgcaagtccgcaccctttcagcactcactctcacccattctccctcccagcagcccctggaaaccaccattccactttgtctccatgaatctgactgctccatgtccctcatataagtgggatcacacagaacttctcctttggttaacggcctattgcacttggcataatgtcctcaagtttcatccgtattgtgtcatatgtcagaatttccttccttttacaggctgaatagtatgctggtgtatgtatataccatattttgtttatccattaatgtatcaacattgagttgcttccacctcttggttcttgtgaataattctgctctgaacatgggtatacacatgtttctttgagacct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16786509 577 - 229590362 taagtgtggcctaagacagttcttctcc---cagtgtggcccagggaagccgaaagattggacacccctgagtcttccatggcgttaggtacattcgcgtgac-tgcagccatcacca----ccatccacctccagaatgctctgcatctccccagactgaaactctgcacctttcaacagccatcaccaccatccacctccagaacgctctgcatctccccagactgaaactctgca-cctttcaacactcact---gcccattctccctcccaccagcccctggcaaccacctttccactttgtctccacgaatccgactgctccacgtacctcatataagtgggatcatacagaacttctcctttggttaatggcctgttgcacttggcataatgtcctcaagtttcatccgtattgtgtcatatgtcagaattgccttccttttaaaggctgaatagtatgctggtgtatgtccataccacagtttgtttatccattaatgtgtcaaca-tgagttgcttccacctcttggttcttgtgaagaattctgctgtgaacgtgggtatgcacatgtttctttgagacct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223548982 577 - 227556264 taagtgtggcctaagacagttcttctcc---cagtgtggcccagggaagccgaaagattggacacccctgagtcttccatggcgttaggtacattcgcgtgac-tgcagccatcacca----ccatccacctccagaatgctctgcatctccccagactgaaactctgcacctttcaacagccatcaccaccatccacctccagaacgctctgcatctccccagactgatactctgca-cctttcaacactcact---gcccattctccctgccaccagcccctggcaaccacctttccactttgtctccacgaatccgactgctccatgtacctcatataagtgggatcatacagaacttctcctttggttaatggcctgttgcacttggcataatgtcctcaagtttcatccgtattgtgtcatatgtcagaattgccttccttttaaaggctgaatagtatgctggtgtatgtccataccacagtttgtttatccattaatgtgtcaaca-tgagttgcttccacctcttggttcttgtgaagaattctgctgtgaacgtgggtatgcacatgtttctttgagacct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16599948 509 - 220367699 TAAGTGTggcctaagacagttcttctcc---ccgtgtggcccagggaagccgaaagattggacacccctgagtCTTCCATGGCGTTAGGTACATTCGCGTGac-tgcagccatcacca----ccatccacc---------------------------------------------------------------------ccAGAATGCTCTGCATCTCCCCAGACTGAAACTCTGCA-CCTTTCAACACTCACT---GCCCATTctccctcccaccagcccctggcaaccacctttCCACTTTGTCTCCACGAATCCGACTGCTCCATGTACCTCATAGAAGTGGGATCATACAGAACTTCTCCTTTGGTTAATGGCCTGTtgcacttggcataatgtcctcaagtttcatccgTATTGTGTCAcctgtcagaatttccttccttttaaaggctgaatagtatgcTGGTGTATGTccataccacagtttgtttatccattaatgTGTCAACAttgagttgcttccacctcttggttcTTGTGAAGAATTCTGCTGTGAACGTGGGTATGCGCATGTTTCTTTGAgacct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82398633 510 + 85787240 taagcatggcctaagacagttctcctcc---cagtgtggcccagggaagccgaaagattggacacccctgagtcttccatggcgttaggtacattcgcgtgac-tgcagccatcacca----ccatccacc--------------------------------------------------------------------tccagaatgctctgcatctccccagactgaaactctgca-cctttcaacactcgct---gcccattctccctcccaccagcccctggcaaccacctttccactttgtctccaagaatccgactgctccatgtacctcatagaagtgggatcatacagaacttctcctttggttaatggcctgttgcacttggcataatgtcctcaagtttcatccgtattgtgtcatatgtcagaatttccttccttttaaaggctgaatagtatgctggtgtatgtccataccacagtttgtttatccattaatgtgtcaacgttgagttgcttccacctcttggttcttgtgaagaattctgctgtgaacgtgggtatgtgcatgtttctttgagacct i chlSab2.chr25 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36263687 270 + 80974532 I e calJac3.chr19 14080463 1463 - 49578535 I a score=1363430.000000 s hg38.chr1_KI270759v1_alt 76362 498 + 425601 tgctctcaattcttttggatatatccagaagtagaacggctgggtcaaatggtggttctgtttttaatttgttggggagccaccatactgttttccatagtagcggccccattttacactccca-caagagtgcatacgggttccaatttctccataccctccccagtaccttt-ttcctcttcacagtagccatcctaatgggtgtgaggtggcatctcattgtggtgtggatctgcgtttccctcatcatgagtgatgttgagcatcttttcatgtctcttggccattggtaagctgagtaatatttggtaaattacttgaccactcaaagcctcaatttcctcttccatagaatggggatagtatctatcccctagtatagcatctatggcctaagattgctgtgaagattaagtTCATTATTCTAAAAGAAATAAATTGTTTTTGGTTCTGTACACTGTTCTAAGCACAGgt------ttgtgtgtgtgtgtgt-------------------------gtgtgtTT s panTro4.chr1 224824551 497 + 228333871 tgctttcaattcttttggatatatgcagaagtagaacggctgg-tcatatggtggttctgtttttaatttgttggggagccgccatactgttttccatagtagcggccccattttacactccca-caagagtgcatacgggttccagtttctccataccctccccagtaccttt-ttcctcttcacagtagccatcctaatgggtgtgaggtggcatctcattgtggtgtggatctgcgtttccctcaacatgagtgatgttgagcatcttttcatgtctcttggccattggtaagctgagtaatatttggtaaattacttgaccactcaaagcctcaatttcctcttccatagaatggggatagtatctatcccctagtatagcatctatggcctaagattgctgtgaagattaagtTCATTATTCTAAAAGAAATAAATTGTTTTTGGTTCTGTGCACTGTTCTAAGCACAGGT------Ttgtgtgtgtgtgtgt-------------------------gtgtgtgt i panTro4.chr1 C 0 I 1 s ponAbe2.chr1 226182059 499 - 229942017 tgctttcaattcttttggatatatccagaagtagaacggctgggtcatacagtggttctgtttttaatttgttggggaaccgccatactgttttccatagtagtggccccattttacactcccaccaagagtgcatatgggttccagtttcttcatatcctccccagtactttt-ttcctcttcacagtagccatcctaatgggtgtcaggtggcatctcattgtggtgtggatctgcgtttccctcatcattagtgatgttgagcatcttttcttgtctcttggccattggtaagctgagcaatatttggtaaattacttgaccactcaaagcctcaatttcctcttctatagaatggggatagtatctatctcctagtatagcatctatggcctaagattgctgtgaagattaagtTCATTGTTCTAAAAGAAATAAATTGTTTTTAGTTCTGTGAACTGTTCTAAGCACAGGG------gtgtgtgtgtgtgtgt-------------------------gtgtgtgt i ponAbe2.chr1 C 0 I 23 s nomLeu3.chr5 140071195 495 - 143122389 tgctttcaattcttttggatatatccagaagtagaatggctgggtcatatggtggttctgtttttaatttgttggggaaccgccatactgctttccttagtagcggccccattttacactcccaccaagagtgcatacatgttccagtttctccatatcctccccaatgcttct-ttcctcttcacagtagccatcctaatgggtgtgaggtggcatctcattgtggtgtggatctgcgtttccctcatcattagtgacgttgagcatcttttcatgtatcttggccattggtaagctgagtaatatttggtaaattacttgaccactcaaagcctcaatttcctcttctatagaatggggatagtatctagcccctagtatagtatatatggcctaagattgctgtgaagattaagtTCATTATTCTAAAAGAAATAAATTGTTTTTAGTTCTGTGCACTGTTCTAAGCACAGGT------TTTTCTGTGAGTGCAT-------------------------ATGT---- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16787086 494 - 229590362 tgctttcaattcttttggatatatccagcagtagaacagctaggtcatatggtggttctgtttttaatttgttgaggaactgccatactgttttccatagtagtggccccattttagactcccaccaagaatgcatacgggtcccagtttctccacatcctccccaatgcgttt-ttcctcttcacagtagccatcctaacgggtgtgagatggcatctcattgtggtttggatctgcgtttccctcattattagtgatgctgagcatcttttcgtgcctcttggccattggtaagctgagtaatatttggtaaattagttgatcactcagagcctcaatttcctcttctacagaatggggatagtatctatcccctagtatagtatctatggcctaagattgctgtgaagattaagtTCATTATTCTAAAAGAAATAAATTGTTTTTAGTTCTGTGCA-----CTAAGCACAGGG------GTTTGTGTGTGTGTGT-------------------------GTGTGttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223549559 492 - 227556264 tgctttcaattcttttggatatatccagcagtagaacagctaggtcatatggtggttctgtttttaatttgttgaggaactgccatactgttttccatagtagtggccccattttagactcccaccaagaatgcatacgggttccagtttctccacatcctccccaatgcgttt-ttcctcttcacagtagccatcctaacgggtgtgagatggcatctcattgtggtttggatctgcgtttccctcattattagtgatgctgagcatcttttcgtgcctcttggccattggtaagctgagtaatatttggtaaattagttgatcactcagagcctcaatttcctcttctacagaatggggatagtatctatcccctagtataatatctatggcctaagattgctgtgaagattaagtTCATTATTCTAAAAGAAATAAATTGTTTTTAGTTCTGTGCA-----CTAAGCACAGGG------gtt--tgtgtgtgtgt-------------------------gtgtgttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16600457 491 - 220367699 tgctttcaattcttttggctaTATCCAGCAGTAGAACAGCTAGGTCATATGgtggttctgtttttaatttattgaggaactgccatactgttttccacagtagcggccccattttacactcccaccaagaatGCATacgggttccagtttctccacatcctccccaataCTTTT-TTCCTCTTCACAGTAGCCATCCTAACGGGTGtgaggtggcatctcattgtggtttggatctgCGTTTCCCTCattattagtgatgctgagcatcttttcatgcctCTTGGCCATTGGTAAGCTGAGTAGTATTTGGTAAATTACTTGATCACTCAAAGCCTCGATTTCCTCTTCTATAGAATGGGG-TAGTATCTATCCCCTCGTATAGTATCTATGGCCTaagattgctgtgaggattaagttcattattctaaaagaaataaattgtttttagttctgtgCA-----CTAAGCAcaggg------gtt--tgtgtgtgtgt-------------------------gtgcattt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82399143 494 + 85787240 tgctttcagttcttttggatatatccagcagtagaacagctaggtcatatggtggttctgtttttaatttgttgaggaactgccatactgttttccatagtagcggccccattttacactcccaccaagaatgcatacgggttccagtgtctccatatcctcctcaatactttt-ttcctcttcacagtagccatcctaacgggtgtgaggtggcatctcattgtggtttggatctgcgtttccctcattattagcgatgctgagcatcttttcatgcctcttggccattggtaagctgagtaatatttggtaaattacttgatcactcaaagcctcgatttcctcttctacagaatggggatagtgtctatccgctagtatagtatctacggcctaagattgctgtgaagattaagtTCATTATTCTAAAAGAAATAAATTGTTTTTAGTTCTGTGCA-----CTAAGCACAGGG------gtttgtgtgtgtgtgt-------------------------gtgtgttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14081926 496 - 49578535 tgctttcagttctttgggatatatccggaagtaaaactgctgggtcataaggtaattctgtttttaatctgtcgaggagctgccatactgttttccgtagca--ggcaccgtttcacactcccgccaagggtgcgtaagggttccagtttctcaaaaccctcc-cagtgcttttcctctccttcgcagtagccatcctaaggggtgtgagcgggcctctccttgtggtttggatttgtgtcttcctcattattagaaatgatgagcatcttttcgtgcctcttggccgt------------------------------ttgaccactcaaagcctcaa--tcctcttctacagaatggggatagtatctgtcccctagcctagtatctgtagcctgagattgctgtggagattaagtTCGTTATTCTAAAAGAAGTCAATTGTTTTTAGTTCTGTATACTGTTCTAAGCACTGGTTTAAAATTTtatgtatatatattatatatataaattagatataagccatgcattt i calJac3.chr19 I 1463 C 0 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36263687 270 + 80974532 I a score=-7425.000000 s hg38.chr1_KI270759v1_alt 76860 10 + 425601 -------------------TGtttcttgt---------------------------- s panTro4.chr1 224825049 10 + 228333871 -------------------tgttttgttt---------------------------- i panTro4.chr1 I 1 C 0 s rheMac3.chr1 16787580 5 - 229590362 -------------------tgttt--------------------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223550051 5 - 227556264 -------------------tgttt--------------------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16600948 5 - 220367699 -------------------cgttt--------------------------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82399637 5 + 85787240 -------------------tgttt--------------------------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14082422 52 - 49578535 tactaaatatatattcacatgttt-----atatataattatatatacaAattattat i calJac3.chr19 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36263687 270 + 80974532 I e nomLeu3.chr5 140071690 0 - 143122389 C e ponAbe2.chr1 226182558 23 - 229942017 I a score=922117.000000 s hg38.chr1_KI270759v1_alt 76870 376 + 425601 -tttgttttgttttgtttttgaggcagagtttcattcttgttgcccaggctgcagtgcaatggcacaatctcagctcatcacaatctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagct--gagattacaggcatgcaccaccacgcccggctaa-ttttgtatttttagtacagacggggtttctccatgttggtcaggctggtcttgaactcccgacctcaggtgatccaccctcctcggcctcccaaagtgctgggattacaggtgtgagccaccactcctggcTAGCACTGGTTTTAAAT------------------------------------------------------------------------tatatatgtatattctatat--tg---tatatatataaattatttttatgtgtgtcaca-atttt s panTro4.chr1 224825059 374 + 228333871 -tttgttttgttttgtttttgaggcggagtttcattcttgttgcccaggctgcagtgcaatggcacaatctcagctcatcacaatctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagct--gagattacaggcatgcaccaccacgcccagctaa-ttttgtatttttagtacagacggggtttctccatgttggtcaggctggtcttgaactcccgacctcaggtgatccaccctcctcggcctcccaaagtgctgggattacaggcgtgagccaccactcctggcTAGCACTGGttttaaat------------------------------------------------------------------------tatatat--atattctacat--tg---tatatatatatattatttttatGTATGTCACA-ATTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226182581 376 - 229942017 -tttgttttgttttgtttttgagatggaatttcactcttgttgcccaggctgcagtgcaatggcacaatctcagctcatcacaatctccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagct--gagattacaggcatgcaccaccacgcccggctaa-ttttgtatttttaggacagacggggtttctccatgttggtcaggctggtcttgaactcccgacctcaggtgatccacccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggctAGCACTGCTTTTAAAT------------------------------------------------------------------------tatatat--atattctgtattata---tatatatataaattatttttatatatgtcaca-atttt i ponAbe2.chr1 I 23 C 0 s nomLeu3.chr5 140071690 379 - 143122389 -TTAGTC---TTTTGTGAttgagacagagtttcactcttgttgcccaggctgcagtgcaatggcgcaatctcagctcaccacaacctccgcctcctgggttcaagcaattctcctgcctcagcctccagagtagct--gagattacaggcatgcgccaccatgcccagctaa-ttttgtatttttagtacagatggggtttctccatgttggtcaagctggtctcaaactcccgacctcaggtgatctgcccgcctcggcctcccaaagtgctgggattacaagcgtgagccaccgcgcccagcTAGCACTGGTTTTAAAT--------------------------------TTGa------------------------------------tatatatacatgttctatattgta---tatatacataaattatttttatatatgtcaca-atttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16787585 378 - 229590362 -tttgttttgttttgtttttgagacggagttttgctcttgttgcgcaggctgcagtgcaatggtgcaatctcagctcaccac---ctccgccgcctgggttcaagcgattctcctgcctcagcctcccgagtagct--ggaattacaggcatgcgccaccatgcccggctaa-ttttgtatttttagtagagacgaggtttctccatgttggtcaagctggtctcgaactcccgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggtgtgagccactgtgcctggcTAGCACTGGTTTTAAAT------------------------------tatata------------------------------------tatatatatatattctata---tt---tatatatataaatta-ttttgtatatgtcacacatttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223550056 405 - 227556264 -tttgttttgttttgtttttgagacggagttttgctcttgttgcgcaggctgcagtgcaatggtgcaatctcagctcaccac---ctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagct--ggaattacaggcatgcgccaccatgcccggctaa-ttttgtatttttagtagagacgaggtttctccatgttggtcaagctggtctcgaactcccgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggtgtgagccactgtgcctggcTAGCACTGGTTTTAAATtatatatatatatatat---tctatatttatatata------------------------------------tatatatatatattctata---tt---tatatatataAATTA-TTTTGTATATGTCACACATTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16600953 443 - 220367699 -tttgttttgttttgtttttgagacggagttttgctcttgttgcgcaggctgcagtgcaatggtgcaatctcagctcaccac---ctccgcctcctgggttcaagcaattctcctgcctcagcctcccgagtagct--ggaattacaggcatgcgccaccacgcccagctaa-ttttgtatttttagtagagacggggtttctccatgttggtcaagctggtctcgaactcccgacctcaggtaatctgcccacctcggcctcccaaaatgctgggattacaggtgtgagccactgtgcctggctagcactggttttaaattttatatatttatatatatatatatatttatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatattttctatat--tt---tatatatataaatta-ttttgtatatgt--cacatttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82399642 376 + 85787240 -tttgttttgttttgtttttgagacggagttttgctcttgttgcccaagctgcagtgcaatggtgcaatctcagctcaccac---ctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagct--ggaattataggcatgcgccaccaggccc-gctaa-ttttgtatttttagtagagacggggtttctccatgttggtcaagctggtcttgaactcccgacctcaggtgatctgtccgccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcctggcTAACACTGGTTTTAAAT----------------------------------ta------------------------------------tatatatgtatattctata---ttttatatatatataaatta-ttttatatatgtcacacatttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14082474 324 - 49578535 tattattactattattatttgagatggagtcttgctcttgttgccctggctgcagtgcagtggcatgatctcagctcactgcaacctctgcctcccaggtttaagcaattctcctgcctcagcctcctgagtagctgggggattataggtgcatgccaccatgctcggctactttttgaatttttagtagaaatggagtttcaccatgttagccaggctggtcttgaactcctcacctcaggtgatccactcaactcggcctcccaaagtgttggaattacaggcgtgagccaccacacctggc---------ctataaat------------------------------------------------------------------------tattttta-ataa---------------------------------------------------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36263687 270 + 80974532 I a score=85141.000000 s hg38.chr1_KI270759v1_alt 77246 33 + 425601 actaaatatatacttacatgtatttatatataa s panTro4.chr1 224825433 33 + 228333871 Aataaatatatacttacatatatttatatataa i panTro4.chr1 C 0 I 11 s ponAbe2.chr1 226182957 33 - 229942017 actaaatatatacttacatatatttatatataa i ponAbe2.chr1 C 0 I 40 s nomLeu3.chr5 140072069 33 - 143122389 actaaatatgtacttacatatgtttatatataa i nomLeu3.chr5 C 0 I 11 s rheMac3.chr1 16787963 33 - 229590362 actaaatatatacttacatatatttatatataa i rheMac3.chr1 C 0 I 7 s macFas5.chr1 223550461 33 - 227556264 ACtaaatatatacttacatatatttatatataa i macFas5.chr1 C 0 I 7 s papAnu2.chr1 16601396 33 - 220367699 gctaaatatatacttacatatatttatatataa i papAnu2.chr1 C 0 I 7 s chlSab2.chr25 82400018 33 + 85787240 actaaatatatacttacatatatttatatgtaa i chlSab2.chr25 C 0 I 7 s canFam3.chr7 36263957 33 + 80974532 ATTAAGTTTATTCATCCTAAAATTTATGTTTGA i canFam3.chr7 I 270 C 0 e mm10.chr1 178689985 219 + 195471971 I e calJac3.chr19 14082798 0 - 49578535 C a score=33237.000000 s hg38.chr1_KI270759v1_alt 77279 30 + 425601 attatttttagt---------gaata--tatattttat------ata s panTro4.chr1 224825477 32 + 228333871 attatttttagt---------gaataaatatatttttt------ata i panTro4.chr1 I 11 C 0 s nomLeu3.chr5 140072113 31 - 143122389 attatttttaata--------aaata--tatattttat------aca i nomLeu3.chr5 I 11 C 0 s rheMac3.chr1 16788003 41 - 229590362 ataattttaaata----aatggaata--tatattttatacacacaca i rheMac3.chr1 I 7 C 0 s macFas5.chr1 223550501 35 - 227556264 ataattttaaata----aatggaata--tatattttat------aca i macFas5.chr1 I 7 C 0 s papAnu2.chr1 16601436 35 - 220367699 ataatttttaata----aatggtata--tatattttat------ata i papAnu2.chr1 I 7 C 0 s chlSab2.chr25 82400058 35 + 85787240 ataatttttaata----aatggaata--tatattttat------ata i chlSab2.chr25 I 7 C 0 s calJac3.chr19 14082798 21 - 49578535 ------------------gtaaagta--tatatttttt------ata i calJac3.chr19 C 0 C 0 s canFam3.chr7 36263990 35 + 80974532 ---GTTCTAAGCACTGGATTTAAATG---AAATTTTAT------GTa i canFam3.chr7 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I e ponAbe2.chr1 226182990 40 - 229942017 I a score=498732.000000 s hg38.chr1_KI270759v1_alt 77309 209 + 425601 tatacacacacacaca------tatatatatatgtatatgtatatatatatataCagagagagagagagag-agGCAAACTCTGACCTGAGAAGCTCTATAAAGTCAACCCACACAGATTACTCACAGAGCATGGCTCTCTG-CTTATTGCAGCCCGAAG----GCAACACATTTAAAGGTGAGGCAGACATACCTAAAATAA-TTAACATGCCCCTGAAAA s panTro4.chr1 224825509 207 + 228333871 tatatatacacacaca------tatatatatatgtatatgtatatatatata--CAGAGAGAGAGAGAGAG-AGGCAAACTCTGACCTGAGAAGCTCTATAAAGTCAACCCACACAGATTACTCACAGAGCATGGCTCTCTG-CTTATTGCAGCCCGAAG----GCAACACATTTAAAGGTGAGGCAGACATACCTAAAATAA-TTAACATGCCCCTGAAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226183030 191 - 229942017 tatacacacacacaca------tatatatatataaa------------------taGCAAGAGAGAGAGAG-GGGCAAACTCCGACCTGAGAAGCTCTATAAAGTCAACCCACACAGATTACTCACAGAGCATGGCTCTCTG-CTTATTGCAGCCCGAAG----GCAACACATTTAAAGGTGAGGCAGACATACCTAAAATAA-TTAACATGCCCCTGAAAA i ponAbe2.chr1 I 40 C 0 s nomLeu3.chr5 140072144 205 - 143122389 --cacacacacacaca------tatatatatatagagagagagagagacaga--gagagagagagagagag-agGCAAACTCCGACCCGAGAAGCTCTATAAAGTCAACCCGCACAGATTACTCACAGAGCGTGGCTCTCTG-CTTATTGCAGCCTGAAG----GCAACACATTTAAAGGTGAGGCAGACATACCTAAAATAA-TTAACATGTCCCTGAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16788044 205 - 229590362 --cacacacacacaca------cacacacacatatatatatatatatataga--gagagagagagagagag-GCACAGAATCTGACCTGAGAAGCTCTATAAAGCCAACCTGCACAGATTACTCACAGAGCATGGCTCTCTG-CTCATTGCAGCCCGAAA----ACAACACATTTAAAGGTGAGGCAGACATACCTAAAATAA-TTAACATGCCCCTGAAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223550536 205 - 227556264 --cacacacacacaca------cacacacatatatatatatatatatagaga--gagagagagagagagag-GCACAGAATCTGACCTGAGAAGCTCTATAAAGCCAACCTGCACAGATTACTCACAGAGCATGGCTCTCTG-CTCGTTGCAGCCCGAAA----ACAACACATTTAAAGGTGAGGCAGACATACCTAAAATAA-TTAACATGCCCCTGAAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16601471 172 - 220367699 --cacacacacacac----------------------atatatatatataga--gagagagagagagagag-gcacagaATCTGACCTGAGAAGCTCTATAAAGCCAACCTGCACAGATTACTCACAGAGCATGGCTCTCTG-CTCATTGCAGCCCGAAA----ACAACACATTTAAAGGTGAGGCAG------------------AACATGCCCCTGAAAA i papAnu2.chr1 C 0 I 3 s chlSab2.chr25 82400093 211 + 85787240 --catacacacacatatgtgtgtgtgtgtatatatatatatatatatagaga--gagagagagagagagag-agGCAGAATCCGACCTGGGAAGCTCTATAAAGTCAACCTGCACAGATTAGTCACAGAGCATGGCTCTCTG-CTCATTGTAGCCCGAAG----ACAACACATTTAAAGGTGAGGCAGACATACCTAAAATAA-TGAACATGTCCCTGAAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14082819 189 - 49578535 taGacacacacacaca------cacacacacacaca------------------cacacacGGGGGGGGGG-GGTTAGAATTTGACCTGAGAAGCTCTATAAAGTGAGCCTGCACAGATGACTCACAGAGCATGGCGCTCTGCCTTATTGCAGCC----G----GCAACACACTGAAAGGTGAGGCAAACATACCTAAAAGAATTTAACATGCCTCCGAGAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36264025 158 + 80974532 --cacacacacacaca------cacacacacacaca------------------caGATTTGCAGAATGAGTTTGCATA-------CTGAGAAATTCTACAAACCCAACATGCAGGGGCTACTTGTAGAGCATGGTTCTCTG-C------CATCCCGCAGATGCATGGCGCATTGACAGGTGACATGCACACACCCAG------------------------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I a score=2953.000000 s hg38.chr1_KI270759v1_alt 77518 3 + 425601 ACA s panTro4.chr1 224825716 3 + 228333871 ACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226183221 3 - 229942017 ATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140072349 3 - 143122389 ATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16788249 3 - 229590362 AGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223550741 3 - 227556264 AGA i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82400304 3 + 85787240 AGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14083008 3 - 49578535 ATG i calJac3.chr19 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36264183 0 + 80974532 C e papAnu2.chr1 16601643 3 - 220367699 I a score=125880.000000 s hg38.chr1_KI270759v1_alt 77521 59 + 425601 GCAGTGGAATTGGTGAATTTAGAAAACCGAGGCATCCCTCACGTCTGAACACGGTATC--C s panTro4.chr1 224825719 59 + 228333871 GCAGTGGAATTGGTGAATTTAGAAAACTGAGGCATCCCTCATGTCTGAACATGGTATC--C i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226183224 59 - 229942017 GCAGTGGAATTGGTGAATTTAGAAAACCGAGGCATCCCTCCCATCTGCACACGGTATC--C i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140072352 59 - 143122389 GTGGTGGAATTGGTGAATTTAGAAAACCGAGGCATCCCTCACGTCTGAACACGGTATC--C i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16788252 58 - 229590362 GTGGTGGAATTGGTGAATTTGGAAAATCAAGGCACCCCTCATGTCTGAACACAGTATC--- i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223550744 58 - 227556264 GTGGTGGAATTGGTGAATTTGGAAAATCAAGGCACCCCTCATGTCTGAACACAGTATC--- i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16601646 59 - 220367699 GTGGTGGAATTGGTGAATTTGGAAAATCAAGGCACCCCTCATGTCTGAACACAGTATCC-- i papAnu2.chr1 I 3 T 62 s chlSab2.chr25 82400307 59 + 85787240 GTGGTGGAATTGGTGAATTTGGAAAACCGAGGCACCCCTCATGTCTGAACACGGTATC-C- i chlSab2.chr25 C 0 T 69 s calJac3.chr19 14083011 58 - 49578535 GTGGTGGAACTGGCAAATTTAGAATACGGAGGCATCTGTCACGTCGGAACACGGTGGC--- i calJac3.chr19 C 0 I 2 s canFam3.chr7 36264183 2 + 80974532 -----------------------------------CC------------------------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I a score=6111.000000 s hg38.chr1_KI270759v1_alt 77580 3 + 425601 CTG s panTro4.chr1 224825778 3 + 228333871 CTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226183283 3 - 229942017 CTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140072411 3 - 143122389 CTG i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82400297 3 + 85787240 CTG i chlSab2.chr25 T 69 C 0 s calJac3.chr19 14083071 3 - 49578535 CTG i calJac3.chr19 I 2 I 80 s canFam3.chr7 36264185 3 + 80974532 CTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I e rheMac3.chr1 16788310 1 - 229590362 I e papAnu2.chr1 16601705 62 - 220367699 T e macFas5.chr1 223550802 1 - 227556264 I a score=3640.000000 s hg38.chr1_KI270759v1_alt 77583 4 + 425601 AAAA s panTro4.chr1 224825781 4 + 228333871 AAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226183286 4 - 229942017 AAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140072414 4 - 143122389 AAAA i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82400300 4 + 85787240 AAAA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36264188 0 + 80974532 C e calJac3.chr19 14083074 80 - 49578535 I e rheMac3.chr1 16788310 1 - 229590362 I e papAnu2.chr1 16601705 62 - 220367699 T e macFas5.chr1 223550802 1 - 227556264 I a score=26351.000000 s hg38.chr1_KI270759v1_alt 77587 21 + 425601 ATAGCGGTGGAATTGGTGAAT s panTro4.chr1 224825785 21 + 228333871 ATAGCGGTGGAATTGGTGAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226183290 21 - 229942017 ATAGCGGTGGAATTGGTGAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140072418 21 - 143122389 ATAGGGGTGGAATTGGTGAAT i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16601643 21 - 220367699 AGAGTGGTGGAATTGGTGAAT i papAnu2.chr1 T 62 C 0 s chlSab2.chr25 82400304 21 + 85787240 AGAGTGGTGGAATTGGTGAAT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36264188 0 + 80974532 C e calJac3.chr19 14083074 80 - 49578535 I e rheMac3.chr1 16788310 1 - 229590362 I e macFas5.chr1 223550802 1 - 227556264 I a score=37010.000000 s hg38.chr1_KI270759v1_alt 77608 37 + 425601 TTAGAAAACCGAGGCAT---------------------------------------------------------------------CCCTCACGTCTGAACACGGT s panTro4.chr1 224825806 37 + 228333871 TTAGAAAACCGAGGCAT---------------------------------------------------------------------CCCTCACGTCTGATCACGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226183311 36 - 229942017 TTAGAAAACCGAGGCAT----------------------------------------------------------------------CCTCCCGTCTGCACACGGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140072439 106 - 143122389 TTAGAAAACCGAGGCATCCCTCACATCTGAACACAGTATCCCTGAAAAATAGGGGTGGAATTGGTGAATTTAGAAAACCGAGGCATCCCTCCCGTCTGAACATGGT i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16601664 37 - 220367699 TTGGAAAATCAAGGCAC---------------------------------------------------------------------CCCTCATGTCTGAACACAGT i papAnu2.chr1 C 0 I 4 s chlSab2.chr25 82400325 37 + 85787240 TTGGAAAACCGAGGCAC---------------------------------------------------------------------CCCTCATGTCTGAACACGGT i chlSab2.chr25 C 0 I 4 s calJac3.chr19 14083154 37 - 49578535 TCGGAACACGGAGGCAC---------------------------------------------------------------------CTGTCACGTCGGAACACGGT i calJac3.chr19 I 80 C 0 s canFam3.chr7 36264188 18 + 80974532 ----------GAGGCAT---------------------------------------------------------------------CCCTT---------CGTGGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178689985 219 + 195471971 I e rheMac3.chr1 16788310 1 - 229590362 I e macFas5.chr1 223550802 1 - 227556264 I a score=1099767.000000 s hg38.chr1_KI270759v1_alt 77645 327 + 425601 ATCCGTGTGTTTTTAGCAGTAATCTCATGATGAATATCCTGAACACAGCCTTCGTGCAGGGTCCACTCTCCAGCTTAGAGATTCATTCCCAGCCTACTTCAAAGGCAGCTGAGACTGTGTATTGGAGTTTCTGTTCAAGACAACGGTGTCTTGTTTTCCTCTAAAGACAGATTGTACTTTCTCATGTAAATAGCCTTTTTGATAGAATGCAGGTGCTTCCAGGGATTAACTGCTGCTATTAGGCTAGGTGGCCCACTCTCTC----CACCCTGTTCAAACAGCCAGTGCTTCATCATAGTTTATGTAACTGGCAACTTAGAAGCAGCAGCC s panTro4.chr1 224825843 327 + 228333871 ATCCGTGTGTTTTTAGCAGTAATCTCATGATGAATATCCTGAACACAGCCTTCGTGCAGGGTCCACTCTCCAGCTTAGAGATTCATTCCCAGCCTACTTCAAAGGCAGCTGAGACTGTGTATTGGAGTTTCTGTTCAAGACAACGGTGTCTTGTTTTCCTCTAAAGACAGATTGTACTTTCTCATGTAAATAGCCTTTTTGATAGaatgcaggtgcttccagggattaactgctgctattaggctaggtggcccactctctc----caccctgttcaaacagccagtgcttcatcatagtttatgaaactggcaacttagaagcagcagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226183347 331 - 229942017 ATCCATGTGTTTTTAGCAGTAATCTCATGATGAATATCCTGAACATAGCCTTCGTGCAGGGTCCACTCTGCAGCTTAGAGATTCATTCCCAGCCTACTTCAAAGGCAGCTGAGACTGTGTACTGGAGTTTCTGTTCAAGACAACGGTTTCTTGTTTTCCTCTAAAGACAGATTGTACTTTCTCATGTAAATAGCCTTTTTGATAGAATGCAGGTGCTTCCAGGGATTAACTGCTGCTATTAGGCTAGGTGGCCCACTCTCTCCAAACACCCTGTTCAAACAGCCAGTGCTTCATCATAGTTTATGAAACTGGCAACTTAGAAGCAGCAGCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140072545 331 - 143122389 ATCCGTGTGTTTTTAGCAGTAATCTCGTGATGAATATCCTGAACATAACCTTCGTGCAGGGTCCACTCTGCAGCTTAGAGATTCATTCCCAGCCTACTTCAAAGGCAGCTGAGACTGTGTATTGGAGTTTCTGTTCAAGACAACGGTTTCTTGTTTTCCTCTAAAGACAGATTGTACTTTCTCATGTAAATAGCCTTTTTGATGGAATGCAGGTGCTTCCAGGGATTAACTGCTGCTATTAGGCTAGGTGGCCCACTCTCTCCAAACACCCTGTTCAAACAGCCAGTGCTTCATCATAGTTTATGAAACTGGCAACTTAGAAGCAGCAGCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16788311 327 - 229590362 GTCTGT---TTTTTAGCAGTAATCTCATGATGAATATCCTGAACATAGCCTTCGTGCAGGGCCCACTCTGCAGCTTAGAGATTCATTCCCAGCCCACTTCAAAGGCAGCTGAGACTGTGTATTGGAGTTTCTGTTCAAGACAACGATTTCTTGTTTTCCTCTGAAGACAGATTGTACTTTCTCATGTAAATAGCCTTTTTGATAGAATGCAGGTGCTTCCAGGGATTAACTGCTGCTATTAGGCTAGGTGGCCCACTCTCTCCAAACACTCTGTTCAAACGGCCAGTGCTTCATCATAGTTTATGAAACT-GCAACTTAGAAGCAGCAGCC i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223550803 327 - 227556264 GTCTGT---TTTTTAGCAGTAATCTCATGATGAATATCCTGAACATAGCCTTCGTGCAGGGCCCACTCTGCAGCTTAGAGATTCATTCCCAGCCCACTTCAAAGGCAGCTGAGACTGTGTATTGGAGTTTCTGTTCAAGACAACGATTTCTTGTTTTCCTCTGAAGACAGATTGTACTTTCTCATGTAAATAGCCTTTTTGATAGAATGCAGGTGCTTCCAGGGATTAACTGCTGCTATTAGGCTAGGTGGCCCACTCTCTCCAAACACTCTGTTCAAACGGCCAGTGCTTCATCATAGTTTATGAAACT-GCAACTTAGAAGCAGCAGCC i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16601705 327 - 220367699 ATCTGT---TTTTTAGCAGTAATCTCATGATGAATATCCTGAACATAGCCTTCGTGCAGGGCCCACTCTGCAGCTTAGAGATTCATTCCCAGCCTACTTCAAAGGCAGCTGAGACTGTGTATTGGAATTTCTGTTCAAGACAACGATTTCTTGTTTTCCTCTGAAGACAGATTGTACTTTCTCATGTAAATAGCCTTTTTGATAGAATGCAGGTGCTTCCAGGGATTAAGTGCTGCTGTTAGGCTAGGTGGCCCACTCTCTCCAAACACTCTGTTCGAACGGCCAGTGCTTCATCAGAGTTTATGAAACT-GCAACTTAGAAGCAGCAGCC i papAnu2.chr1 I 4 C 0 s chlSab2.chr25 82400366 327 + 85787240 ATCTGT---TTTTTAGCAGTAATCTCGTGATGAATATCCTGAACATAGCCTTCGTGCAGGGCCCACTCTGCAGCATAGAGAGTCGTTCCCAGCCTACTTCAAAGGCAGCTGAGACTGTGTGTTGGAGTTTCTGTTCAAGACAACGATTTCTTGTTTTCCTCTGAAGACAGATTGTACTTTCTCATGTAAATAGCCTTTTTGATGGAATGCAGGTGCTTCCAGGGATTAGCTGCTGCTATTAGGCTAGGTGGCCCACTCTCTCCAAACACTCTGTTCAAACGGTCAGTGCTTCATCATAGTTTATGAAACT-GCAACTTAGAAGCAGCAGCC i chlSab2.chr25 I 4 C 0 s calJac3.chr19 14083191 328 - 49578535 ATCAGTCTGTTTTCAGCAGTCATCTCATGATGAATACCCTGAACATAGCCGTTTTGCAGGGTCCACTCTGCAGCTTGGAGATTCATTCACAGCCCACTTCAAAGGC-GCCGAGACTGTCT--TGGAGTTTCTGCTCAAGACCACAGTTCCTTGTTTTCCTCTGAAGACAGATTCTACGTTCTCATCTGAATAGCCTTTGTGATGGAATGCAGGTGCTTCCAGGGATTAGCTGCTGCTACTGGGCCAGGTGGCCCAGGCTCTCCAAATGCGCAGTTCTAACAGCCAGTGCTTCATCATACTTTATGAAACTGGCGACTTAGAAGCAGCAACC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36264206 318 + 80974532 -ACAGCTTGGTTTTGATAGTCTTCTCATGGTGAGTACCCTGAACACAGCCAT-GTGCAGGG-CTGTTCGGTAGCTTCAAGATTCACTCA-GGTCCATT------GCAGCTGAGATTGTGTATCGCAGTTTTTGTTGAAAACCACCATGTTTCGTTTTCCTCTAAGGACAAATTATCCTTTTTTACCCAAATAGCCTTTTTGATGGGGTGCAGGTACGTGGGGAGATTGATAGCTACTATTGGGGGA-GTGGCTCGTTCCCTCCAA--ACCCTGGTCAGAAAACCCATGCTTAGTCACCGTGGATGAGACTGGCCATTTAGAAGCAGTGGCC i canFam3.chr7 C 0 I 146 e mm10.chr1 178689985 219 + 195471971 I a score=1170196.000000 s hg38.chr1_KI270759v1_alt 77972 382 + 425601 ------------------------------------------------------------TCTTTGATGAGTCCATTAGGAGGTAGGAGAAGGATTGGTAGCAGAGAAATGAAAGTTCTTGCACACAAATAATGAGTAGAAAGGATGAACGGTGGTTGCTGGTGCTTTCTGAACAAAATGAG-GGCAAGGGGTGCTGTCCACTAATAAGTGTCATTTAGAGGCTTTATTCTTCTAGAAAAAGGGCTGCCCATCTGCTCTCCACTGAGAAGGTGATTTGCCGAC-TGTTCCTGAACG-TGTGCCTGGGTTGCTAAAACTTGCGGAACGTGTATCAGCTGTTGAAATGGCCTTTCCTTTGGGAAAACTGTGCAGACagcaaagagagtacaaaacacgaaaatcttaattccattccctct--tctgccactttcagtatgacctcggg s panTro4.chr1 224826170 382 + 228333871 ------------------------------------------------------------tctttgatgagTCCATTAGGAGGTAGGAGAAGGATTGGTAGCAGAGAAATGAAAGTTCTTGCACACAAATAATGAGTAGAAAGGATGAACGGTGGTTGCTGGTGCTTTCTGAACAAAATGAG-GGCAAGGGGTGCTGTCCACTAATAAGTGTCATTTAGAGGCTTTATTCTTCTAGAAAAAGGGCTGCCCATCTGCTCTCCACTGAGAAGGTGATTTGCCGAC-TGTTCCTGAGCG-TGTGCCTGGGTTGCTAAAACTTGCGGAACGTGTATCAGCTGTTGAAATGGCCTTTCCTTTGGGAAAACTGTGCAGACagcaaagagagtacaaaacacgaaaatcttaattccattccctct--tctgccactttcagtatgacctcggg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226183678 382 - 229942017 ------------------------------------------------------------ACTTTGTTGAGTCCATTAGGAGGTAGGAGAAGGATTGGTAGCAGAGAAATGAAAGTTCTTGCGCACAAATAATGAGTAGAAAAGATGAACGGTGGTTGCTGGTGCTTTCGGAACAAAATAAG-GGCAAGGGGTGCTGTCCACTAATAAGTGTCATATAGAGCCTTCATTCTTCTAGGAAAAGGGCTGCCGATCTGCTCTCCACTGAGAAGGTGATTTGCCGAC-TGTTCCTGAATG-TGTGCCTGGGTTGCTAAAACTTGCAGAAAGCATATCAGCTGTTGAAATGGCCTTTCCTTTGGGAAAACTGTGCAGACagcaaggagagtacaaaacacgaaaatcttgattccattccctct--tctgccattttcaatatgaccttggg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140072876 383 - 143122389 ------------------------------------------------------------ACTTTGTTGAGTCTATTAGGAGGTAGGAGAAGGATCGGTAGCAGATAAATGAAAGTTCTTGTGCACAAATAATGAGTAGAAAAGATGAACGGTGGTTGCTGGTGCTTTCTGAACAAAATGAG-GGCAAGGGGTGCTGTCCGCTAATAAGTGTCATTTAGAGCCTTTATTCTCCTAGAAAAAGGGCTGCCGATCTGCTCTCCACTGAGAAGGTGATTTGCAGACTTGTTCCTGAATG-TGTGCCTGGGTTGCTAAAACTTGCAGAAAGTGTATCAGCTGTTGAAGTGGCCTTTCCTTTGGGAAAACTGTGCAGACagcaaagagagtacaaaacacgaaaatcttaattccattccctct--tctgccactttcagtatgaccttggg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16788638 379 - 229590362 ------------------------------------------------------------ACTTTGTTGAGTTCATTAGGAGGTAAGAGAAGGGTCGGTA-TGGAGAAATGAAAGTTCTTGCACACAAATAATGAGTAGAAAAGATGAATGGTGGTTGCCGGTGCTTTCTGAACAAAATGAG-GGCAAGGGGTGCTGTCCACTAATAAGTGTCATTTAGAGCCTTTATTCTTCTAGAAAAAGGGCTGCCAAT---CTCTCCACTGAGAAGGTGATTTGCCGACTCGTTACTGAACG-TGTGCCTGGGTTGCTAAAACCCGCAGAAAGTGTATCAGCTGTTGAAATGGCCTTCCCTTGGGGAAAACTGTGCAGGCaacaaagagagtacaaaacacgaaaatcttaattccgttccctct--tctgccactttcagtatgaccttggg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223551130 379 - 227556264 ------------------------------------------------------------ACTTTGTTGAGTTCATTAGGAGGTAAGAGAAGGGTCGGTA-TGGAGAAATGAAAGTTCTTGCACACAAATAATGAGTAGAAAAGATGAATGGTGGTTGCCGGTGCTTTCTGAACAAAATGAG-GGCAAGGGGTGCTGTCCACTAATAAGTGTCATTTAGAGCCTTTATTCTTCTAGAAAAAGGGCTGCCGAT---CTCTCCACTGAGAAGGTGATTTGCCGACTCGTTACTGAACG-TGTGCCTGGGTTGCTAAAACCCACAGAAAGTGTATCAGCTGTTGAAATGGCCTTCCCTTGGGGAAAACTGTGCAGGCaacaaagagagtacaaaacacgaaaatcttaattctgttccctct--tctgccactttcagtatgaccttggg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16602032 379 - 220367699 ------------------------------------------------------------ACTTTGTTGAGTTCATTAGGAAGTAAGAGAAGGATCGGTG-TGGAGAAATGAAAGTTCTTGCGCACAAATAATGAGTAGAAAAGATGAATGGTGGTTGCCGGTGCTTTCTGAACAAAATGAG-GGCAAGGGGTGCTGTCCACTAATAAGTGTCATTTAGAGCCTTTATTCTTCTGGAAAAAGGGCTGCCGAT---CTCTCCACTGAGAAGGTGATTTGCCGACTCGTTACTGAACG-TGTGCCTGGGTTGCTAAAACCCGCAGAAAGTGTATCAGCTGTTGAAATGGCCTTCCCTTGGGGAAAACTGTGCAGACAACAAAGAGAGCACAAAACACGAAAATCTTAATTCCGTTCCCTCT--TCTGCCACTTTCagtatgaccttggg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82400693 379 + 85787240 ------------------------------------------------------------ACTTTGTTGAGTTCATTAGGAGGTAAGAGAAGGATCGGTA-TGGAGAAATGAAAGTTCTTGCACACAAATAATGAGTAGAAAAGATGAATGGTGGTTGCCGGTGCTTTCTGAACAAAATGAG-GGCAAGGGGTGCTGTCCACTAATAAGTGTCATTTAGAGCCTTTATTCTTCTAGAAAAAGGGCTGCCGAT---CTCTCCACTGAGAAGGTGATTTGCCGACTCGTTACTGAACG-TGTGCCTGGGTTGCTAAAACTCGCAGAAAGTGTATCAGCTGTTGAAATGGCCTTCCCTTGGGGAAAACTGTGCAGGCAACAAAGAGAGTACAAAACATGAAAATCTTAATTCCGTTCCCTCT--TCTGCCACTTTCAGTATGACCTTGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14083519 381 - 49578535 ------------------------------------------------------------ACTTTGTTGAGTCCATTAGGAGGTAAGAGAAGGATTGGTAGCAGAGTAAGGAGAATTCCCGTGCACAAATAATGAGTAGAAAAGATGAATGGTGGTTGCCATTGCTTTCTGAACGCAATGAG-GGCAAGAGGTGCTGTCCAC-GATACGTGTCATCTAGAGCCTTTATTCTTCTAGGAAAAGGGCTGCCGGT-CGCTCTCCACCAAGAAGGTGATTTGCCGACTGGCTCCTGAATG-TGTGTCTGGATTGCT--GACTTGCAGAGAGCGCATTGGCTGTTGAAATGGCCTTTCCTTTGGGAAAGCTGTGCAGACAACAAAGAGAGTGTAAAACACTAAAATCTTACTTCCATTCCCCCTTCTCTACCACTTTCACGATGACCTTGGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36264670 402 + 80974532 tctctcatgaataaataaataaaattttaaaacaaaCAAACAAAAGACGAAGCAGTGGCCACTTTG-TGATCCTGTTAGGAAGTAAGAGAGGGACAAGGA--------------GTTCTTGTCCAC-AACAAAGAGGAGAAAAGATGAATGGTGGCAGCTGACACTTTCTGGAAAAACCAAGAGACAAGAGATGTTGTCCTTTCATGAGTGTGGTTTAGAAGCTCTGTTGTTCTAGAAGGA-GGCTGCAAACCCACGGGCCACAGAGGCAGCGGGGGAGGGAG--------GGGCATTGTGCCCAGATGG-TGAAACTTGCAGGAAGCCTTTCAGCCATGGCGATGGCATTGACTTTGGGAAGACCGT-----------AGAGAG------AAGTGAATCTCTTCATTCCACTGCACTT--CTGACCACCTACGCTGTGAGCTTGGA i canFam3.chr7 I 146 C 0 e mm10.chr1 178689985 219 + 195471971 I a score=1414182.000000 s hg38.chr1_KI270759v1_alt 78354 555 + 425601 caggttttctacctGCACAGAGAAAAACTGAAGTCGCACGCTGCTCTTGGTTTTCTCAGCCTGG-AGCAGATGCCTTTGAGCAGCTACCACTTCCCGTTCCCCTGACAGTGTGCTCCGGCTTTACGAGGCTGTTTTTCTCTCCACAGTCACCAAGTCCACTGTCTCTCCACAGTCACCAAGTCCACTGTCTCTCTCCACTTTGGGGGCCATCTGTGAATATCACTAACTTAGCATTACAGTACCAAAAATaataattatagctaccacttgtgtacttactatatgccaggcactgtgctgagggctttgtgtgtcttaatgcattcaagcttcataacattcctatg----aagtaaattattcccattttaATTAGTTAGTTAATTAATTCATCAagacaggatctctttctgttgcccagctggatactgtggtgtgatgacagctcatcgcagtctcaaactcctgggctcaagtggtcctcccactttgacctcccacagtgctggattacaagcatgaaccgccatgcctggcccattctcatTTTAAAGATAA s panTro4.chr1 224826552 527 + 228333871 caggttttctacctGCACAGAGAAAAACTGAAGTCGCACGCTGCTCTTGGTTTTCTCAGCCTGG-AGCAGATGCCTTTGAGCAGCTACCACTTCCCGTTCCCCTGAAAGTGTGCTCCGGCTTTAAGAGGCTGTTTTTCTCTCCACAGTCACCAAGTCCACTGTCTCTCCAC----------------------------TTTGGGGGCCATCTGTGAATATCACTAACTTAGCATTACAGTAACAAAAATaataattatagctaccacttgtgtacttactatatgccaggcactgtgctgagggctttgtgtgtcttaatgcattcaagcttggtaacattcctatg----aaataaattattcccattttaATTAGTTAGTTAATTAATTCATCAagacaggatctctttctgttgcccagctggatactgtggtgcgatgacagctcaccgcagtctcaaactcctgggctcaagtggtcctcccacttttacctcccacagtgctggattacaagcatgaaccgccatgcctggcCCATTCTCATTTTGAAGATAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226184060 519 - 229942017 caggttttctacctGCACAGGGAAAAACTGAAGTCGCACGCTGCTCTTGGTTTTCTCAGCCTGG-AGCAGATGCCTTTGAGCAGCTACCACTTCCCGTTCCCCTGACAGTGTGCTCCGGC-TTACGAGGCTGTTTTTCTCTCCAAAGTCACCAAGTCCACTGTCTCTCTAC----------------------------TTTGGGAGCTATCTGTGAATATCACTAACTTAGTATTACAGTAACAAAAGTaataattatagctaccacttgtgtacttactatatgccaggcactgtgctgagggctttgtgtgccttaatgcattcaagcttcataacattcctatg----aagtaaattattcccattttaATTAGTTAGTTAATTAATTCATCAagacaggatctctttctgttgcccagctggatgctgtggtacgatgacagctcactgc-------aactcctgggctcaagtggtcctcccacttttacctcccacagtgctgggttacaagcatgagccgccatgcctggcccattctcattttAAAGATAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140073259 521 - 143122389 caga-tttctacctGCACAGAGAAAAACTGAAGTCGCACACTGCTCTTGGTTTTCTCAGCCTGG-AGCAGATGCCTTTGAG-AGCTGCCACTTCCAGTTCCCCTGACAGTGTG--CCGGC-TTACGAGGCTGTTTTTCTCTCCAAAGTTACCAAATCCACTGTCTCTCCAC----------------------------TTTGGG-GCCATCTGTGAATATCACTAACTCAGTATTACAGTAACAAAAATAACaattatagctaccacttgggtacttactatatgccaggcactgtgctgagggctttgtgtgtcttaatgcattcaagcttcataacattcctatgaagtaagtaaattattcccatttGAA----TTAGTTAATGAATTCATCAagacaggatctctttctgttgcccagctggatgctgtggtgcgatgaccgctcactgcagtcttgaactcctgggctcaagtggtcctcccgcttttacctcccacagtgctggattacaagcataagccgccatgcctggcCCATTCGCATTTTAAAGATAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16789017 529 - 229590362 caggttttccacctGCACAGAGAAAAACTGAAGTCCCACGCTGCTCCT-GTTTTCTCAGCCTGG-AGCAGATGCCTTTGAGCAGCTACCGCTTCCCGTTCCCCTGACGGTGTGCTGCGGC-TTACGACGCTGGTTTTCTCTCCAAAGTTACCACGTCCACGGTCTCTCAGC----------------------------TTTGGGGGCCGTCTGTGAATATCACTAACTTACTACTACAGTAACAAAAATagtaattgtagctaccacttgggtacttaccctatgccaggcactgtgctgagggcttcgtgtgttttaatgcattcaagcttcatagcattcctatgaagtaagtatattattcccattttaATTAGTTGGTTAATTAATTCATCAagacaggatctttttctgttgcccagctggatagtgtggtgcgatggcggctcactgccatctcgaactcctgggctcaagtggttgtccctcttttacgtcccgcagtgctggattacaagcttgagccaccatgcctggcccattctcatTTTAAAGATAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223551509 529 - 227556264 caggttttccacctGCACAGAGAAAAACTGAAGTCCCACGCTGCTCCT-GTTTTCTCAGCCTGG-AGCAGATGCCTTTGAGCAGCTACCGCTTCCCGTTCCCCTGACGGTGTGCTGCGGC-TTACGACGCTGGTTTTCTCTCCAAAGTTACCACGTCCACGGTCTCTCAGC----------------------------TTTGGGGGCCGTCTGTGAATATCACTAACTTACTACTACAGTAACAAAAATagtaattgtagctaccacttgggtacttaccctatgccaggcactgtgctgagggcttcgtgtgttttaatgcattcaagcttcatagcattcctatgaagtaagtatattattcccattttaATTAGTTGGTTAATTAATTCATCAagacaggatctttttctgttgcccagctggatagtgtggtgcgatggcggctcactgccatctcgaactcctgggctcaagtggttgtccctcttttacgtcccgcagtgctggattacaagcttgagccaccatgcctggcccattctcattttAAAGATAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16602411 530 - 220367699 caggttttCCACCTGcacagagaaaaactgaagtCCTACGCTGCTCCTGGTTTTCTCAGCCTGG-AGCAGATGCCTTTGAGCAGCTACTGCTTCCCGTTCCCCTGACGGTGTGCTGCGGG-TTACGAGGCTGGTTTTCTCTCCAAAGTTACCACGTCCACGGTCTCTCAGC----------------------------TTTGGGGGCCGTCTGTGAATATCACTAACTTACTACTACAGTAACAAAAAGAATGATTGTAGCTACCACTTGGGTACTTaccctatgccaggcactgtgctgagggcTTCATGTGTTTTAATGCATTCAAGCTTCATAGCATTCCTATGAAGTAAgtatattattcccattttaattaGTTAGTTAATTAATTCATCAAGACAGGatctttttctgttgcccagctggataCTGTGGTGCGATGGCGGCTCACTgccatcttgaactcctgggctcaagtggttgtCCCTCTTTTACGTCCCGCAGTGCTgcattacaagcttgagccaccatgcttggcccattctcattttaaagataa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82401072 530 + 85787240 CAGGTTTTCAACCTGCACAGAGAAAAACTGAAGTCCCACGCTGCTCCTGGTTTTCTCAGCCTGG-AGCAGATGCCTTTGAGCAGCTACCGCTTCCCGTTCCCCTGACGGTGTGCTCCGGC-TTATGAGGCTGGTTTTCCATCCAAAGTTACCACGTCCACGGTCTCTCAGC----------------------------TTTGGGGGCCGTCTGTGACTATCACTGACTTACTACTACAGTAACAAAAATagtaattgtagctaccacttgggtacttaccctatgccaggcactgtgctgagggcttcgtgtgttttaatgcattcaagcttcatagcattcctaggaagtaaatatattattcccattttaATTAGCTAGTTAATTAATTCATCAagacaggatctttttctgttgcccagctggatactgtggtgcgatggcggctcactgccatctcaaactcctgggctcaagtggtcctccctcttttacctcctgcagtgctggattacaagcttgagccgccatgcctggcCCGTTCTCATTTTAAAGATAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14083900 486 - 49578535 AGTGTTTTTCAACTGCGGAGAGAAACGCTGAAGTCGCTCGCTGCTGTGG---TTCTCAGCCTGTCAGCAGACACCTTTGAGCAGCCACCTTTTCCCGTCGCCCTGCCGGCGCGCTCTGGC-TTACCACACTGCTTTTCTCTGCAGAGTTACCAAGTTCACGGTCTCTCAAC----------------------------TTTGTGAGCCATCTGTGAATATCATTAACTTAGTATGATAGTAACAAAAATaataattatagctaacgcttgggtacttaccttatgccaggcactgtgctgagggcttt--------------------gctctgtaacattcctatgaagtaagtaaattatcctcattttaATTAGTTAATTA--------ATCAAGAGA-gatctctttctgttgcccagctgga-------gt------acagctcactgcagtatcgaactcctgggctcgagtggtcctcccacttttacctcccaaagtgctagattaaaagcatgagccaccatgcctagcCCATTCTCATTTTAAAGATAA i calJac3.chr19 C 0 I 297 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36265072 0 + 80974532 C a score=270272.000000 s hg38.chr1_KI270759v1_alt 78909 96 + 425601 GGAAAATGAGGTACAAGTTGATAGAAACAGACAGTACCTCACCACCTGCATGGAGGAATCACGTATTTATGGAGTCCTGAACATTTAATCAACAAC s panTro4.chr1 224827079 96 + 228333871 AGAAAATGAGGTACAAGTTGATAGAAACAGACAGTACCTCACCACCTGCTTGGAGGAATCACATATTTATGGAGTCCTGAACATTTAATCAACAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226184579 96 - 229942017 GGAAAATGAGGTACAAGTTGATAGAAACAGACAGTACCTCACCACCTGCATGGAGGAATCACATTTTTATGGAGTCCTAAACATTTAATCAACAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140073780 96 - 143122389 GGAAAATGAGGTACAAGTTGATAGAAATAGACAGTGTCTCACCACCTGCATGGAGGAATCACACATTTATGGAGTCCTAAACATTTAATCAACAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16789546 96 - 229590362 GGAAAATGAGGTACAAGTTGATAAAAACAGACAGTACCTCACCACCGGCATGGAGGAATCACATATTTATGGAGTCCTAAACATTTAATCCACAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223552038 96 - 227556264 GGAAAATGAGGTACAAGTTGATAACAACAGACAGTACCTCACCACCGGCATGGAGGAATCACATATTTATGGAGTCCTAAACATTTAATCCACAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16602941 96 - 220367699 ggaaaatgaggtaCAAGTTGATAGAAACAGACAGTACCTCACCACCGGCATGGAGGAATCACATATTTATGGAGTCCTAAACATTTAATCCACAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82401602 96 + 85787240 GAAAAATGAGGTACAAGTTGATAGAAACAGACAGTACCTCACCACCGGCATGGAGGAATCACATATTTATGGAGTCCTAAACATTTAATCCACAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14084683 84 - 49578535 ggaaaaTGAGGTCCGAGTTGATAGAAATAGACAGTACGT--------GCATGGAGGAATCGCACACTTACGG-GTCCTAAACATT---TCAACAGC i calJac3.chr19 I 297 C 0 e mm10.chr1 178689985 219 + 195471971 I e canFam3.chr7 36265072 0 + 80974532 C a score=220435.000000 s hg38.chr1_KI270759v1_alt 79005 70 + 425601 TGTTTTATTGAGC-ATTTAGTTTGTTATTGGTTGAAATTAAGAAGACTGGTAAATA------CCA------TGAATTAATAAA s panTro4.chr1 224827175 70 + 228333871 TGTTTTATTGAGC-ATTTAGTTTGTTATTGGTTGAAATTAAGAAGACTGGTAAATA------CCA------TGAATTAATAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226184675 70 - 229942017 TGTTTTATTGAGC-ATTTACTTTGTTATTGGTTGAAATTAAGAAGACTGGTAAATA------CCA------TGAGTTAATAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140073876 70 - 143122389 TGTTTTATCGAGC-ATTTACTTTGTTATTGGTTGAAATTAAGAAGACTGATAAATA------CCA------TGAGTTAATGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16789642 70 - 229590362 TGTTTTATTGAGC-ATTGACTTTGTTATTGGTTGAAATTAAGAAGACTGGTAAATA------CCA------TGAGCTAATAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223552134 70 - 227556264 TGTTTTATTGAGC-ATTGACTTTGTTATTGGTTGAAATTAAGAAGACTGGTAAATA------CCA------TGAGCTAATAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16603037 70 - 220367699 TGTTTTATTGAGC-ATTGACTTTGTTATTGGTTGAAATTAAGAAGACTGGTAAATA------CCA------TGAGCTAATAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82401698 70 + 85787240 TGTTTTATTGAGC-ATTTACTTTGTTATTGGTTGAAATTAAGAAGACTGGTAAATA------CCA------TGAGCTAATAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14084767 76 - 49578535 TGTTCTATTGAGCAATATTCATTGCTATTGGTTGGAATGAAAAAGACTG-TAGATA------CCATTTCTGTGAGTTAATAAC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36265072 76 + 80974532 TGGTTTATTGAGC-ACTTACTTAGTTATTTGTTAGAAGTAAGAAGTTTGGTAGATAGTATTTCTA------CAACTTCATAAT i canFam3.chr7 C 0 I 2 e mm10.chr1 178689985 219 + 195471971 I a score=2210056.000000 s hg38.chr1_KI270759v1_alt 79075 689 + 425601 AAGTTTTATGTTAATAGTAAACTTG-TTTA--GGAAATCTGGTTTTGTCTGACTTGAAATATTAAGGAAATATGTGTAGGTTTAGGTAAGAATATATATTTGGTTTAGGACTGTTCATATTAAGTTACATAGTCCTCAGCCTTAATTCACCTCACATCTCCC-CATACATCTTATGT-CTTTTTCTTTCTTCTTTTTGCTATTAAATTACAGCATCACCTCTTGATCACTCTAAGACCTAATCATCTAGCTTGTAAATTATTCATACTTTTCCCCCTCACCTCACTCCTCTCTTTTGGATTTTATCCATTTATCTGCATCTCTGAGAATAGGTGGGCAACAGAAATAAAAGGATT--CAGTGAAAATAAGTTCATTCTGTCATTTATTAGCAACTTACACAACAGGTTTGGCAGAA-------------AAGAAAATGGGAACTAAAATAGAGTAATTAAAAAGAAAGTCACTTATTTAAACATTGCATATCTTGCTACCTCTTCTAAGTAGAAATTAATTAGCTCCTAACAGCTAACTAATAGACTAAGTGGAAAATAGACCAGTGCAACATTTGGGGTTAATTGGTACAAATATATTGATTACAGTAACTAGTCATTAAATGTTTTATAAGGTATATATGCTATTAGTATAATCTCTGTATGGACATCATCTACTGAGTGCATGGATGCCGTAAACACAT-CATGCTT-- s panTro4.chr1 224827245 689 + 228333871 AAGTTTTATGTTAATAGTAAACTTG-TTTA--GGAAATCTGGTTTTGTCTGACTTGAAATATTAAGGATATATGTGTAGGTTTAGGTAAGAATATATATTTGGTTTAGGACTGTTCATATTAAGTTACGTAGTCCTCAGCCTTAATTCACCTCGCATCTCCC-CATACATCTTATGT-CTTTTTCTTTCTTCTTTTTGCTATTAAATTACAGCATCACCTCTTGATCACTCTAAGACCTAATCATCTAGCTTGTAAATTATTCATACTTTTCCCCCTCACCTCACTCCTCTCTTTTGGATTTTATCCATTTATCTGCATCTCTGAGAATAGGTGGGCAACAGAGATAAAAGGATT--CAGTGAAAATAAGTTCATTCTGTCATTTGTTAGCAACTTACACAACAGGTTTGGCAGAA-------------AAGAAAATGGGAACTAAAATAGAGTAATTAAAAAGAAAGTCACTTATTTAAACATTGCACATCTTGCTACCTCTTCTAAGTAGAAATTAATTAGCTCCTAACAGCTAACTAATAGACTAAGTGGAAAATAGACCAGTGCAACATTTGGGGTTAGTTGGTACAAATATATTGATTACAGTAACTAGTCATTAAATGTTTTATAAGGTATATATGCTATTAGTATAATCTCTGTATGGACATCATCTACTGAGTGCATGGATGCCGTAAACACAT-CATGCTT-- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226184745 688 - 229942017 AAGTTTTATGTTAATAGTAAACTTG-TTTA--GGAGATCTGGTTTTGTCTGACTTGAAATATTAAGGATATATGTGTAGGTTTAGGTAAGAATATATATTTGGTTTAGGACTGTTCATATTAAGTTACATAGTCCTCAGCCTTAATTCACCTCACGTCTCCC-CATACATCTTATGT-CTTTTTCTTTCTTCTTTTTGCTATTAAATTACGGCATCACCTGTTGATCATTCTAAGACCTAATCATCTAGCTTGTAAATTATTCATACTTTT-CCCCTCACCTCACCCCTCTCTTTTGGATTTTATCCATTTATCTGCATCTCTGAGAATAGGTGGGCAATAGAAATAAAAGGATT--CAGTGAAAATAAGTTCATTCTGTCATTTATTAGCCACTTACACAACAGGTTTGGCAGAA-------------AAGAAAATGGGAACTAAAATAGAGTAATTAAAAAGAAAGTCACTTATTTAAACATTGCACATCTTTCTACCTCTTCTAAGTAGAAATTAATTAGCTCCTAACAGCTAACTAATAGACTAAGTGGAAAATAGACCAGTGCAACATTTGGGGTTAATTGGTACAAATATATTGATTACAGTAACTAGTCATTAAATGTTTTATAAGGTATATATGCTACTAGTGTAACCTCTGTATGGACATCATCTACTGAGTGCATGGATGCCGTAAACACAT-CATGCTT-- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140073946 690 - 143122389 AAGTTTTATGTTAATAGTAAACTTG-TTTACCAGAGGTCTGGTTTTGTCTGACTTGAAATATTAAGGATATATGTGTAGGTTTAGGTAAGAATACATACTTGGTTTAGGACTGTTCATATTAAGTTACATAGTCCTCAGCCTTAATTCACCTCACTTCTCCC-CATACATCTTATGT-CTTTTTCTTTCTTCTTTTTGCTGTTAAATTACAGCATCACCTCTTGATCATTCTAAGACCTAATCATCTAGCTTGTAAATTATTCATACTTTT-CCCCTCACCTCACCCCTCTCTTTTGGATTTTATCCATTTATCTGCATCTCTGAGAATAGGTGGGCAACAGAAATAAAAGGATT--CAGTGACAATAAGTTCATTCTGTCATTTATTAGCAACTTACACAACAAGTTTGGCAGAA-------------AAGAAAATGGGAACTAAAATAGAGTAATTAAAAAGAAAGTCACTTATTTAAACACTGCAACTCTTTCTACCTCTTCTAAGTAGAAATTAATTAGCTCCTAACAGCTAACTAATAGACTAAGTGGAAAATAGACCAGTGCAACAGTTGGGGTTAATTGGTACAAATATATTGATTACAGTAACTAGTCATTAAATGTTTTATAAGGTATATATGCTACTAGTATAATCTCTGTGTGGGCATCATCTACTGAGTGCATGGATGCCATAAACACAT-CATGCTT-- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16789712 685 - 229590362 ACGTTTTATGTTAATGGTGAACTTG-TTTA--GGGGATCTGGTTTTGTCTGACTCGAGACGTTAAGGATATATATGTAGGTTTAGGTAAGAATATGTATTTGGTTTTGGACTGCTCATATTAAGTTTTGTAGTCCTCAGCCTGAATTCACCTCACATCTCCC-CGCACATCTTATGTCTTTTTTCTTTCGTCTTTTTGC-GTTAAATTACAGCATCACCTGTTGATCATTCTATGACCTAATCATCTAGCTTGTAAATTATTCATACTTTT-CCCCTCACCTCACCC--CTCTTTTGGATTTTATCCATTTATTTGCATCTCTGAGAATAGGTGGGCAACAGAAATAAAAGGACT--CGGTGAAAATCAGTTCATTCTGTCATTTATTGGCAACTTACCCAACAGGTTTGGCAGAA-------------AAGAAAATGGGAACTAAAATAGAGTAATTAAAAAGAAAGTCACTTATTTGAACATTGCAAATCTTTCTACCTCTTCTAAGTAGAAATTAATTAGCTCCTAACAGCTAACTAATAGACTAAGTGCAAAATAGACCAGTGCAACATTTGAGGTTAATTGGTACAAATATATTGATTACAGTAACTAGTCATTAAATGTTTTATAAGGTATACATGCTGCTAGCGTAATCGCTCTAT-GACATCATCTACTGAGTGCGCGGATGCCATAAACACAT-CATGCTT-- i rheMac3.chr1 C 0 I 2759 s macFas5.chr1 223552204 686 - 227556264 ACGTTTTATGTTAATGGTGAACTTG-TTTA--GGGGATCTGGTTTTGTCTGACTCGAGACGTTAAGGATATATGTGTAGGTTTAGGTAAGAATATATATTTGGTTTTGGACTGCTCATATTAAGTTTTGTAGTCCTCAGCCTGAATTCACCTCACATCTCCC-CGCACATCTTATGTCTTTTTTCTTTCGTCTTTTTGC-GTTAAATTACAGCATCACCTGTTGATCATTCTATGACCTAATCATCTAGCTTGTAAATTATTCATACTTTT-CCCCTCACCTCACTC--CTCTTTTGGATTTTATCCATTTATTTGCATCTCTGAGAATAGGTGGGCAACAGAAATAAAAGGATT--CGGTGAAAATCAGTTCATTCTGTCATTTATTGGCAACTTACCCAACAGGTTTGGCAGAA-------------AAGAAAATGGGAACTAAAATAGAGTAATTAAAAAGAAAGTCACTTATTTGAACATTGCAAATCTTTCTACCTCTTCTAAGTAGAAATTAATTAGCTCCTAACAGCTAACTAATAGACTAAGTGGAAAATAGACCAGTGCAACATTTGAGGTTAATTGGTACAAATATATTGATTACAGTAACTAGTCATTAAATGTTTTATAAGGTATACATGCTGCTAGCATAATCGCTCTATGGACATCATCTACTGAGTGCGCGGATGCCATAAACACAT-CATGCTT-- i macFas5.chr1 C 0 I 631 s papAnu2.chr1 16603107 686 - 220367699 ACGTTTTATGTTAATGGTGAACTTG-TTTA--GGGGATCTGGTTTTGTCTGACTCGAGACGTTAAGGATATATGTGTAGGTTTAGGTAAGAATATGTATTTGGTTTTAGACTGCTCATATTAAGTTTTGTAGTCCTCAGCCTGAATTCACCTCACATCTCCC-CGCACAtctcatgtcttttttctttcttctttttgc-gtTAAATTACAGCATCACCTGTTGATCATTCTACGACCTAATCATCTAGCTTGTAAATTATTCATACTTTT-CCCCTCACCTCACCC--CTCTTTTggattttatccatttatttgcatCTCTGAGAATAGGTGagcaacagaaataaaaggatt--tGGTGAAAATCAGTTCATTCTGTCATTTATTGGCAACTTACCCAACAGGtttggcagaa-------------aagaaaatgggaactAAAATAgagtaattaaaaagaaagtcaCTTATTTGAACATTGCAAATCTTTCTACCTCTTCTAAGTAGAAATTAATTAGCTCCTAACAGCTAACTAATAGACTAAGTGGAAAATAGACCAGTGCAACATTTGAGGTTAATTGGTACAAATATATTGATTACAGTAACTAgtcattaaatgttttataaagtatACATGCTGCTAGCGTAATCTCTCTATGGACATCATCTACTGAGTGCGCGGATGCCATAAACACAT-CATGCTT-- i papAnu2.chr1 C 0 I 631 s chlSab2.chr25 82401768 685 + 85787240 GCGTTTTATGTTAATAGTAAACTTG-TTTA--GGGGATCTAGTTTTGTCTGACTGGAGATGTTAAGGATATATGTGTAGGTTTAGGTAAGAATATGTATTTGGTTTTGGACTGCTCATATTAAGTTTTGTAGTCCTCAGCCTGAATTCACCTCACGTCTCCC-CACACATCTTATGT-TTTTTTCTTTCTTCTTTTTGC-ATTAAATTACAGCATCACCTGTTGATCATTCTACGACCCAATCATCTAGCTTGTAAATTATTCATACTTTT-CCCCTCACCTCACCC--CTTTTTTAGATTTTATCCATTTATTTGCATCTCTGAGAATAGGTGGGCAACAGAAATAAAAGGATT--CAGTGAAAATCAGTTCATTCTGTCATTTATTAGCAACTTACCCAACAGGTTTGGCAGAA-------------AAGAAAATGGGAACTAAAATAGAGTAATTAAAAAGAAAGTCACTTATTTGAACATTGCAAATCTTTCTACCTCTTCTAAGTAGAAATTAATTAGCTCCTAACAGCTAACTAATAGACTAAGTGGAAAATAGACCAGTGCAACATTTGAGGTTAATTGGTACAAATATATTGATTACAGTAACTAGTCATTAAATGTTTTATAAGGTATATATGCTGCTAGCGTAATCTCTCTGTGGACATCATCTACTGAGTGCGCGGATGCCATAAACACAT-CATGCTT-- i chlSab2.chr25 C 0 I 646 s calJac3.chr19 14084843 612 - 49578535 AAGTTTTATGTTCATAGTAAACCTG-TTTA--GGAGATCTGGCTTTGTCTTACTTGAAATATTAGGGATATATACGTAGGTTTAGGTAAGAATACGT--TTGGTTTACGACTGTTCCTATTTAGTTACACAGTCTTCAGTCTTAATTCACCTCGCCTCTCCC-GGTACAGCT------TCTTTTCTCT------------GTTAAATTGTAACATCGCCTCTTGATCATTCTGAGACCTAATTATCTAGCTTGGAAATTATTCATACTTTT-CCCCTCACCTCACCCCTGTCTTTTGGATTTTATCAGTTTATTTGCATCTCTGAGAATAGGTGGGCAACAGGAATAAAAGGATT--CAGTGAAAATCAGTTCATTCTGTCATTTATTAGCAACTCACACAACAGGTTTGGCAGAA-------------AAGGAAATGGGAACTAAAATAGCGTAATTAAAAAGAGAGTCACTTATTGAAACATTGCAGATATTTCTACCTCTTCTAAGCA------------CTACTAACAGCTAACTAATAAACTAAGTGAAAAATGGACCAGTGCAACATTTGGGGTTAATTGGTAGAAATATATTGATTATAGCGATGAGTCATTAAATGCTTTGTAAGGTGTATATGCGGCCAGCATGATCCCTG---------------------------------------------TGCT--- i calJac3.chr19 C 0 C 0 s mm10.chr1 178690204 513 + 195471971 AAGTTTCATGTTAGGAATCAGCTTGATCCA--GAGTCTCTGGTTTTGTTTGGCTGAAAGCATTGGGAAGCCTCGTGCAGAATCA-----------------------------TTCTTATTTAGCTGCCTAGCCCTTGGCCTTGGTTTTCCTCTCATTTC--------------TGG-CTTTGT----------------CTTGAAGCATGCAACCATC-----ATAGCTGTAAGAGCTACTGGTCTAGGAT--------------------TCCCTTCCCTCACCA----------------------CTACTGATATCTCTGAAGGTAAGTCAATGATATGTAAAATAGCTCT--CTATGAAAATCAGTTAATTTTCTTATTTATTAGGAACTTATATGAAAGATTTGTCGTTGCCCCCCCTCCCCCCAAAAAAAGGAAGCC-----------------AAGCAGTCTCCTTACTCAAACACTGCTAATCCTTTTGCTTCTACAAAG---------------------CAGCT-----GTAAAGTAAATGGGAAACGAGCCAGCATAGCATTGAGGGCTAACTGGTATAG--------------------AGTCAATAAATATTTCCTAAGGAATGTAAGTTTCTAGTATAATCCCCTTGTAAACATTA----------------------TAGACAGGT-TGTGCTT-- i mm10.chr1 I 219 C 0 s canFam3.chr7 36265150 625 + 80974532 AAGTTTTATGCTAACAGTAAAC-------A--GGAAGTTTTGGCTTATCTGACTGTGAGTATTCAG--------------------------TGAGTCCCAGCCTCAAGATTGCTTGTATTCGGTTA-----TCTTGAGCCCTGTCTTAC------TCTCCCACACACA---------CTTTTTCTTTTT----------TTTAGATTGCGCAGTCACCTCTAGAGAGTTCTAATTCCCAGTTATTTATCCTGTAAATTATTCAAACCTTA-CCCCTCATCTTACCCTTCTGTTGTGAATTGGTCACAGTTATTTGCATCTCTGAGGATGGGTGGGCAAAGGAAATAAAAGGACCTGTGATGATAACCAGTCGATTCCATCATTTATTAGCAGTTTATGCCAAAGATTTGGCAGAA-------------AAGGCAGTGGGAATGAAAGTAGAGCAATTAACAAGAAACTCACTTATTGAAATGTTGCAAACCTT-CGACCTACTCTAAGTGGCTGCTAA-------CTTCCAACTATATAATAGGCTAAGTGGAAAACAAACCAATGCAGCCTTTAGGGTTAATTGGTGTAAATGTATTAATTACAAGAACTACTCATTAAATGTTTAATAAGGTATATACGTTGCTAACGTAATATCTACCTAAACATCATCCACTGGATGCACATATATTGTAAGCATATGCAGGCTAAC i canFam3.chr7 I 2 C 0 a score=298252.000000 s hg38.chr1_KI270759v1_alt 79764 104 + 425601 AGAACCAGGCGTTTGAACGCTGTCTGGAGTACTTTTACATTGTAGTACCCTGAATGTACATGCCTGTTTGTTATCACTGGGAGGGCAGCTC--AGGACAGGATTAT s panTro4.chr1 224827934 104 + 228333871 AGAACCAGGCGTTTGAACGCTGTCTGGAGTACCTTTACATTGTAGTGCCCTGAATCTACATGCCTGTTTGTTATCACTGGGAGGGCAGCTC--GGGACAGGATTAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226185433 104 - 229942017 AGAACCAGGCGTTTAAACGCTCTCTGGAGTACTTTTACATTGTAGTGCCCTGAATCTACACGCCTGTTTGTTATCATTGGGAGGACAGCTC--AGGACAGGATGAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140074636 104 - 143122389 AGAACCAGGCGTTTAAACGCTCTCTGGAGTACTTTTACATTGTAGTGCCCTGAATCTACATGCCTGTTTGTTATCATTGGGATGGCAGCTC--AGGACAGGATTAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16793156 106 - 229590362 aGAACCATGCATTTAAACGCTCTCTGGAATACTTTCACATTGCAGCGCCCTGAATCTACATGCCTGTTTGTTATCACTGGGAGGGCAGCTCTGGGGTCAGGATTAT i rheMac3.chr1 I 2759 C 0 s macFas5.chr1 223553521 106 - 227556264 aGAACCATGCATTTAAACGCTCTCTGGAATACTTTCACATTGCAGCGCCCTGAATCTACATGCCTGTTTGTTATCACTGGGAGGGCAGCTCTGGGGTCAGGATTAT i macFas5.chr1 I 631 C 0 s papAnu2.chr1 16604424 106 - 220367699 agaaccaTGCATTTAAACGCTCTCTGGAATACTTTCACATTGCAGCGCCCTGAATCTACATGCCTGTTTGTTATCCCTGGGAGGGCAGCTCTGGGGTCAGGATTat i papAnu2.chr1 I 631 C 0 s chlSab2.chr25 82403099 106 + 85787240 AGAACCATGCATTTAAACGCTCTCTGGAATACTTTCACATTGCAGCGCCCTGAATCTACATGCCTGTTTGTTATCACTGGGAGGGCAGCTCTGGGGTTAAGATTAT i chlSab2.chr25 I 646 C 0 s calJac3.chr19 14085455 104 - 49578535 -GAACAACGCGTTTGAATGTTCTCTGGAGT-CTTTTACATTGCAGCGTCCTGAATCTCCATGCCTGTTCATTATCACTGGGAGGGCAGCTTTGGGGGCAGGATTAT i calJac3.chr19 C 0 I 308 s mm10.chr1 178690717 38 + 195471971 ---------------------------------------------GACCCCAAG---------------------ACCAGGAAGA-AAATCTGGAGCAAGGGTTC- i mm10.chr1 C 0 C 0 s canFam3.chr7 36265775 103 + 80974532 AGCAGCAAGTATTTAAA--CTCTCTGGGGCACTTGTACATCATAGCACCCTGAGTCTACACACCTGCCAGGTATCATCAGGCAGGCAA-TCTGGGGAAGGGTTTAC i canFam3.chr7 C 0 C 0 a score=1315731.000000 s hg38.chr1_KI270759v1_alt 79868 430 + 425601 AAAGAGATGGAAAGAGGAGCAAACCTGGGGCGGCGTGGA--GCTGTCATGAGAATGGTATTTTCGGGAGCTGGGGAAGAGGCAGAGAAGGAAGGGAAAACATTTAAAGAGGGCAAAACATGGACTTCATCCGTTAGCTCTACAGACACGGCCCTTGGTAGTTAGGCGACGTGAAGCCACGTGTACTCAGGCAGG-TAG-----------------TGGGGAAGGCTGCTTCTCCA-ACAGATGGAGACAGGGAGGTTGGCAGACCGCTGGCTTAGGAGGAAGACAG-------CAGCAGAA-GGGTTGCGTGTGTGAAGGCAGG-----GTCACAGATATTTAGAACGAAGCCCAAAGTCCTTGGAGATTGGTTGGATGTGGGAAAAGAG--------------------------------------------------------------------------AGAGGATGGTGAGGCTGAGACTCT---GGTT--TCTGTGCCAGGTGTTGCATGGACGGTGAGCTATTAA-----CCGGTGCAGA s panTro4.chr1 224828038 429 + 228333871 AAAGAGATGGAAAGAAGAGCAAACCTGGGGTGGCATGGA--GCTGTCATGAGAGTGGTATTTTCGGGAGCTGGGGAAGAGGCAGAGAAGGAAGGGAAGACATTTAAAGAGGGCAAAACATGGACTTCATCCGTTAGCTCTACAGATACGGCCCTTGGTAGTTAGGCGACGTGAAGCCACGTGTACTCAGGCAGG-TAG-----------------TGGGGAAGGCTGCTTCTCCA-ACACATGGAGACAGGGAGGTTGGCAGACCGCtggcttaggaggaagacag-------cagcagaa-gggttgcgtgtgcgaaggcagg-----atcacagatatttagaacgaagcccaaagtccttggagatt-gttggatgtgggaaaagag--------------------------------------------------------------------------agaggatggtgaggctgagactct---ggtt--tctgtgccaggtgttgcatggacggtgagctattaa-----ccggtgcaga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226185537 430 - 229942017 AAAGAGATGGAAAGAAGAGCAAACCTGGGGCGGCATGGA--GCTGTCATGAGAATGGTATTTTCGGGAGCTGGGGAAGAGGCAGAGAAGGAAGGGAAAACATTTAAAGAGAGCAAAACATGGACTTCATCCCTTAGCTCTACAGACACTGCCCTTGGTAGTTAGGTGACGTGAAGCCACGTGTACTCAGGCAGG-TAG-----------------TGAGGAAGGCTGCTTCTCCA-ACAGACGGAGAGAGGGAGATTGGCAGACCGCTGGCTTAGGAGGAAGACAG-------CAGCAGAA-GGGCTGCGTGTGCAAAGGCAGG-----GTCACAAatatttagaacgaagcccaaagtccttgaagattggttggatgtgggaaaagag--------------------------------------------------------------------------agaggatggtgaggctgagactct---ggtt--tctgtgctgggtgttgcatggacggtgagctattaa-----ccggtgcaga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140074740 430 - 143122389 AAAGAGATGGAAAGAAGAGCAAACCTGGGGCGGCATGGA--GCTGTCATGAGAATGGTATTCTCGGGAGCTGGGGAAGAGGCAGAGAAGGAAGGGAAAACATTTAAAAAGGGCAAAGCATGGACTTCATCCCTTAGCTGTACAGACACGGCCCTTGGTAGTTAGGTGACGTGAAGCCACGTGCACTCAGGCAGG-TAG-----------------TGGGGAAGGCTGCTTCTCCA-ACAGACGGAGAGAGGGAGATTGGCAGACTGCTGGCTTAGGAGGAAGACAG-------CAGCAGAAGGGGCTACGTGTGTGAAGGCAGG-----GTCACAGatatttagaacgaagcccaaagtccttgaagattggttggatgtgggaaaagag--------------------------------------------------------------------------agaggatggtgaggccgagactct---ggtt--tctgtgctgggtgttgcatggacggtgagctattaa-----cc-gtgcaga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16793262 479 - 229590362 AAAGAGATGGAAAGAAGAGCAAATCTGGGGCGGCATGGA--GCTGTCATGAAAATGGTATTTTTGGGAGCTGGGGAAGAGGCAGAGAAGGAAGGGAAAACATTTAAAAAGGGCAAAGCATGGGCTTCATCCCTTAGCTCTACATACACGGCCCTTAGTAGTTAGGCGACGTGAAGCCACGTGTACTCAGGCAGG-TAG-----------------TGGGGAAGGCTGTTTCTCCA-ACAGATGGAGAGAAGGAGGTGGGCAGACCGCTGGCTTAGGAGGAAGATAG-------CAGCAGAA-GGGTTGCGTGTGCGAAGGCAGG----TGCCACAGATATTTAGAACGAAGCCCAAAGTCCTTGCAGATTGGTTGGATGTGGGAGAAGAGAGAGGATGGTGAGGC----------------------TGAT----TTTTTGTGGGAGAAGAGAGAGGATGGTGAAGAGGATGGTGAGGCTGATACTCT---GGTT--TCTGTGCTGGGTGTTGCGTGGACGGTGAACTATTAA-----CCGGAGCAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223553627 493 - 227556264 AAAGAGATGGAAAGAAGAGCAAATCTGGGGCGGCATGGA--GCTGTCATGAAAATGGTATTTTTGGGAGCTGGGGAAGAGGCAGAGAAGGAAGGGAAAACATTTAAAAAGGGCAAAGCATGGGCTTCATCCCTTAGCTCTACATACACGGCCCTTAGTAGTTAGGCGACGTGAAGCCACGTGTACTCAGGCAGG-TAG-----------------TGGGGAAGGCTGTTTCTCCA-ACAGATGGAGAGAAGGAGGTGGGCAGACCGCTGGCTTAGGAGGAAGATAG-------CAGCAGAA-GGGTTGCGTGTGTGAAGGCGGG----TGCCACAGATATTTAGAACGAAGCCCAAAGTCCTTGCAGATTGGTTGGATGTGGGAGAAGAGAGAGGATGGTGAGGCTGATGTGGGAGAAGAGAGAGGATGGTGAGGCTGATGTGGGAGAAGAG------------AGAGGATGGTGAGGCTGATACTCT---GGTT--TCTGTGCTGGGTGTTGCGTGGACGGTGAACTATTAA-----CCGGAGCAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16604530 431 - 220367699 aaagagatggaaagaagAGCAAATCTGGGGCGGCATGGA--GCTGTCATGAAAATGGTATTTTTGGGAGCTGgggaagaggcagagaaggaagggaaaacatttaaaaagggcAAAGCATGGGCTTCATCCCTTAGCTCTACATACACGGCCCTTAGTAGTTAGGCGACGTGAAGCCACGTGTACTCAGGCAGG-TAG-----------------TGGGGAAGGCTGTCTCTCCA-ACAGATGGAGAGAAGGAGGTGGGCAGACCGCTGGCTTAGGAGGAAGATAG-------CAGCAGAA-GGGTTGCGTGTGCGAAGGCAGG----TGCCACAGATATTTAGAATGAAGCCCAAAGTCCTTGCAGATTGGTTGGatgtgggagaagag--------------------------------------------------------------------------agaggatggTGAGGCTGATACTCT---GGTT--TCTGTGCTGGGTGTTGTGTGGACGGTGAACTATTAA-----CCGGAGCAGA i papAnu2.chr1 C 0 I 1668 s chlSab2.chr25 82403205 431 + 85787240 AAAGAGATGGAAAGAAGAGCAAATCTGGGGCGGCATGGA--GCTGTCATGAAAATGGTATTTTTGGGAGCTGGGGAAGAGGCAGAGAAGGAAGGGAAAACATCTAAAAAGGGCAAAGCATGGGCTTCATCCCTTAGCTCTACATATACGGCCCTTAGTAGTTGGGCGACGTGAAGCCACGTGTACTCAGGCAGG-TAG-----------------TGGGGAAGGCTGTTTCTCCA-ACAGACAGAGAGAAGGAGGTGGGCAGACCGCTGGCTTAGGAGGAAGATAG-------CAGCAGAA-GGGTTGTGTGTGCGAAGGCAGG----TGCCACAGATATTTAGAACGAAGCCCAAAGTCCTTGCAGATTGGTTGGATGTGGGAGAAGAG--------------------------------------------------------------------------AGAGGATGGTGAGGCTGATACTCT---GATT--TCTGTGCTGGGTGTTGCGTGGACGGTGAACTATTAA-----CCAGAGCAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14085867 384 - 49578535 aaaGAGATGGAAAGAAGAGCAGACCTGGGGAGGCATGGA--GCCGTCACGGGAATGGTATTTTCGGGAGCT-GTGAAGAGGCAGAG------------------AAAAAGGGTAAAGCATGGGCTTCATCCCTTAGCT---------CGGCCTTT----GTTAGGCAACCAGAAGCCACATGTACCCAGGCAGG-TCG-----------------TGGGGAAGGCTGCTTCTCTA-ACAGACAGAGAGAGTG-GGTGGGCAGAGCACCAGTTTAGGAGGAAGACAG-------CAGCAGAG-GGCTTGGATGGCGGAAGGCAGG----TTTCACAGATATTTAGAATGAAGCCCAAAGTCCTTGAAGATCGGCTGGATGTGGGAAAAGAG--------------------------------------------------------------------------A---GATGGTGAGGCCGATACTCT---GGTT--TCTGTGCTGGGTGCTGCATGGACGGTGA----------------GTGCAGA i calJac3.chr19 I 308 C 0 s mm10.chr1 178690755 426 + 195471971 AAGGAGACAGAGATAAGAGCAGATCTGTA--AACATGGGCTGTCATCATGAGAATGGGGTGTT-GGGAACTGGAAAAGATGCAGAGAA-GAAGCCGGAACACATAAAAATAGCAAATCATCGACTTT-CCCTTTAGTACTACATGTAAGGCTCCTGGTAGCTAAGTGATGTGAAGTGG--------CAGGCAGG-TAGCTATGACTCGGTGGGTTCAGGGGAGCATGGCACTTGA-GTAGACACTGAGAGGGAAG--AACCAATTGTGGATTTAGGAGGGCAATAG-------TCACAGA--GGCTTATGGGT----------------ATTGCAGATGTTTAAGAAGAAG-TCAGAGACCTTGAGGATTGATCATGGGAGGGACAAGGA--------------------------------------------------------------------------GGAGAGAGATGAGAACAAGACCCCCCAGGCTCATTTCTGCTGAGTGTTGAAAAGACTCTGAGCCATTCA-----CAAATTTAGG i mm10.chr1 C 0 I 7 s canFam3.chr7 36265878 401 + 80974532 AAGAAGATAGAAGGAGGAGCAGAGACATAAAGACTCAGG--ATTGTCGCG-GAATGGTGTGCT-GGGAGCTGGAGGAGAGGCAGAGGATG-TGGTGACACACGAGAAATGGGCAGATCATGAGCTTCACCCC---------------CAGCTGTCA-----TAGGCGAGGAAAAAAC-----TACACAGACAGGACAC-----------------AGGAGGAGAGTGGGACTGCGTGCTAACAGAGAAGTGGAGGT---CATAGGTCTGG--TAGGGGGGAGTGAGGACTAGTGAGCAGAG-GGCTTG-GGGTGGGAGGGGTGGGAGATTCCATAGACATTTAGAATAATACCTGGAGGCTTTGAGGATTGGTAGGGTGCAGGAT--GAC--------------------------------------------------------------------------TGGGGATGAC----------CCCT---AG----TCTATGTCGGTGGCCATGTGGGTGGTGAGCTGCTAGGCCCTCTGGTCCAGA i canFam3.chr7 C 0 C 0 a score=30593.000000 s hg38.chr1_KI270759v1_alt 80298 21 + 425601 GAAAGCCGAAA-----------------------------------------------------GAGTAAGGCT s panTro4.chr1 224828467 21 + 228333871 gaaagctgaaa-----------------------------------------------------gagtaaggct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226185967 21 - 229942017 gaaagccgaaa-----------------------------------------------------gagtaaggct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140075170 21 - 143122389 gaaagccgaaa-----------------------------------------------------gagtaaggct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16793741 21 - 229590362 GAAAGTCTAAA-----------------------------------------------------GAATAAGGCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223554120 21 - 227556264 GAAAGTCTAAA-----------------------------------------------------GAATAAGGCT i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82403636 21 + 85787240 GAAAGTCTAAA-----------------------------------------------------GAATAAGGCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14086251 20 - 49578535 GAAAGCC-AGG-----------------------------------------------------CAGTAAGGCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178691188 26 + 195471971 GAAGGCCCAGACCA------------------------------------------------GTGGGCAAAGCT i mm10.chr1 I 7 I 532 s canFam3.chr7 36266279 74 + 80974532 GACAGCTTTGGCCACAATTCTGTGGTATAGAGGCGAGGTTGCATTGGGTGTTGGAGGTGGGGATGGATGAGGCT i canFam3.chr7 C 0 C 0 e papAnu2.chr1 16604961 1668 - 220367699 I a score=6764.000000 s hg38.chr1_KI270759v1_alt 80319 4 + 425601 GAGC s panTro4.chr1 224828488 4 + 228333871 gagc i panTro4.chr1 C 0 I 730 s ponAbe2.chr1 226185988 4 - 229942017 gagc i ponAbe2.chr1 C 0 I 733 s nomLeu3.chr5 140075191 4 - 143122389 gagc i nomLeu3.chr5 C 0 I 723 s rheMac3.chr1 16793762 4 - 229590362 GAGC i rheMac3.chr1 C 0 I 1048 s macFas5.chr1 223554141 4 - 227556264 GAGC i macFas5.chr1 C 0 I 1114 s chlSab2.chr25 82403657 4 + 85787240 GAGC i chlSab2.chr25 C 0 I 729 s calJac3.chr19 14086271 3 - 49578535 GAA- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36266353 4 + 80974532 AGGC i canFam3.chr7 C 0 I 398 e mm10.chr1 178691214 532 + 195471971 I e papAnu2.chr1 16604961 1668 - 220367699 I a score=2000.000000 s hg38.chr1_KI270759v1_alt 80323 3 + 425601 cat s panTro4.chr1 224829222 3 + 228333871 cat i panTro4.chr1 I 730 C 0 s ponAbe2.chr1 226186725 3 - 229942017 cat i ponAbe2.chr1 I 733 C 0 s nomLeu3.chr5 140075918 3 - 143122389 cat i nomLeu3.chr5 I 723 C 0 s calJac3.chr19 14086274 3 - 49578535 CAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178691214 532 + 195471971 I e canFam3.chr7 36266357 398 + 80974532 I e rheMac3.chr1 16793766 1048 - 229590362 I e chlSab2.chr25 82403661 729 + 85787240 I e papAnu2.chr1 16604961 1668 - 220367699 I e macFas5.chr1 223554145 1114 - 227556264 I a score=19380.000000 s hg38.chr1_KI270759v1_alt 80326 16 + 425601 ctgaggtcaggagttc s panTro4.chr1 224829225 16 + 228333871 ctgaggtcaggagttc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226186728 16 - 229942017 ctgaggtcaggagttc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140075921 16 - 143122389 ctgaggtcaggagttc i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82404390 16 + 85787240 ctgaggtcaggagttc i chlSab2.chr25 I 729 C 0 s calJac3.chr19 14086277 15 - 49578535 CTGAGGG-AGGAGTTC i calJac3.chr19 C 0 I 645 e mm10.chr1 178691214 532 + 195471971 I e canFam3.chr7 36266357 398 + 80974532 I e rheMac3.chr1 16793766 1048 - 229590362 I e papAnu2.chr1 16604961 1668 - 220367699 I e macFas5.chr1 223554145 1114 - 227556264 I a score=35251.000000 s hg38.chr1_KI270759v1_alt 80342 39 + 425601 aagaccaccctggccaacatggtgaaaccccatctctac s panTro4.chr1 224829241 39 + 228333871 aagaccaccctggccaacatggtgaaaccccatctctac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226186744 39 - 229942017 aagaccaccctggccaacatggtgaaaccccgtctctac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140075937 39 - 143122389 aagaccaccctggccaacatggtgaaactccgtctctac i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82404406 39 + 85787240 aagaccagcctggccaacatggtgaaaccccgtctctac i chlSab2.chr25 C 0 C 0 e mm10.chr1 178691214 532 + 195471971 I e canFam3.chr7 36266357 398 + 80974532 I e calJac3.chr19 14086292 645 - 49578535 I e rheMac3.chr1 16793766 1048 - 229590362 I e papAnu2.chr1 16604961 1668 - 220367699 I e macFas5.chr1 223554145 1114 - 227556264 I a score=1365.000000 s hg38.chr1_KI270759v1_alt 80381 1 + 425601 t s panTro4.chr1 224829280 1 + 228333871 t i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226186783 1 - 229942017 t i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140075976 1 - 143122389 t i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223555259 1 - 227556264 t i macFas5.chr1 I 1114 C 0 s chlSab2.chr25 82404445 1 + 85787240 t i chlSab2.chr25 C 0 C 0 e mm10.chr1 178691214 532 + 195471971 I e canFam3.chr7 36266357 398 + 80974532 I e calJac3.chr19 14086292 645 - 49578535 I e rheMac3.chr1 16793766 1048 - 229590362 I e papAnu2.chr1 16604961 1668 - 220367699 I a score=394418.000000 s hg38.chr1_KI270759v1_alt 80382 179 + 425601 aaaaatacaaaaattagccaggcatcgtggcacacacctgtaatcccagctactcaggaggctgaggcaggacaattgcttgaacctgggaggcgaaggttgcagtgagttgagattgtgccattgcactccagcctgggcaacagagcaagactgtgtctcaaaaaaa--------agaaagaaaa s panTro4.chr1 224829281 179 + 228333871 aaaaatacaaaaattagccaggcatcgtgtcatacacctgtaatcccagctactcaggaggctgaggcaggacaattgcttgaacctgggaggcgaaggttgcagtgagttgagattgtgccattgcactccagcctgggcagcagagcaagactccgtctcaaaaaaa--------agaaagaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226186784 187 - 229942017 aaaaatacaaaaattagccaggcatcgtggcatgcacctgtaatcccagctattcaggaggctaaggcaggagaattgcttgaacctgggaggcgaaggttgcagtgagctgagattgcaccactgcactccagcctgggcaaaacagcaagactccgtctcaaaaaaaaaaaaaagaaaaagaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140075977 182 - 143122389 aaaaatacaaaaattagccaggcatcgtggcatgcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggcgaaggttgcagtgagctgagattgtgccattgcactccagcctgggcaacacagcaagactctgtctcaaaaaaa-----aagaaaaagaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16794814 171 - 229590362 aaaaataaaaaacttaaccgggcattgtggcacgcacctgtaatcccagctactcaggaggctgagacaggagaatcgcttgaacctgggaggcagaggttgcagtgaactgagattgcaccactgcactccagcctgggccacagagcaaga----gtctc--aaa----------aaaaaaaaaa i rheMac3.chr1 I 1048 C 0 s macFas5.chr1 223555260 177 - 227556264 aaaaataaaaAActtaaccgggcattgtggcacgcacctgtaatcccagctactcaggaggctgagacaggagaatcgcttgaacctgggaggcggaggttgcagtgaactgagattgcaccactgcactccagcctgggccacagagcaagactctgtctcaaaaa----------aaaaaaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16606629 177 - 220367699 aaaaacacaaaacttagccgggcattgtggcacgcacctgtaatcccagctactcaggaggctgagacaggagaatcgcttgaacctgggaggcggaggttgcagtgaactgagattgcgccactgcactccagcctgggccacagagcaagactctgtctcaaaaa----------aaaaaaaaaa i papAnu2.chr1 I 1668 C 0 s chlSab2.chr25 82404446 187 + 85787240 aaaaatacaaaaattagccgggcatcgtggcatgcacctgtaatcccagctactcaggaggctgagacaggagaattgcttgaacctgggaggtggaggttgcagtgaactgagattgcgccattgcactccagcctgggccacagagcaagactctgtctcaaaaaacaaacaaacaaacaaaaaa i chlSab2.chr25 C 0 C 0 e mm10.chr1 178691214 532 + 195471971 I e canFam3.chr7 36266357 398 + 80974532 I e calJac3.chr19 14086292 645 - 49578535 I a score=316153.000000 s hg38.chr1_KI270759v1_alt 80561 125 + 425601 agaaaaGTATCAGTttagcaatattgaaatgtgcagcactcaattattagctgtattcagcctgctgtgtaattgatct---aaaaaaaaaa---------------agacagatttattcttcctatctaactgaggctttg s panTro4.chr1 224829460 125 + 228333871 agaaaagtatcagtttagcaatatttaaatgtgtagcactcaattattagctgtattcagcctgctgtgtaattgatct---aaaaaaaaaa---------------agacagatttattcttcctatctaactgaggcttta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226186971 122 - 229942017 agaaaattatcaatttagcaatattgaaatgcacagcacttaattattagttgtatttagcctgctgtgtaattgatct--aaaaaaaaaaa---------------agacagatttattcttc----ctaactgaggctttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140076159 128 - 143122389 agaaaattatcaatttagcaatattgaaatgtgcagcactcaattattagctgtattcagcctgctgtgtaattgatctaaaaaaaaaaaaa---------------agacaggtgtattcttcctatctaactgaggctttg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16794985 136 - 229590362 agaaaaTTATCAATttagcaatattgaaatgcacagcactcaattattagctatattcagcgtgctgtgtaattgatct---aaaaaaaaaacacacacacacacacactcagatttattcttc----ctaactgaggcttca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223555437 135 - 227556264 agaaaattatcaatttagcaatattgaaatgcacagcactcaattattagctatattcagcgtgctgtgtaattgatct---aaaaaaaaaa-aaacacacacacacactcagatttattcttc----ctaactgaggcttca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16606806 133 - 220367699 agaaaattatcaattTAGCAATATTGAAATGCACAGCACTCAATTATTAGCTATATTCAGCATGCTGTGTAattgatct---aaaaaaaaaa---acacacacacacactcagattTATTCTTC----CTAACTGAGGCTTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82404633 129 + 85787240 agaaaattatcaatttagcaatattgaaatgcacagcactcaattattagctatattcagcgtgctgtgtaattgatct---aaaaaaaaac-------acacacgcagtcaaatttattcttc----ctaactgaggcttca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14086937 120 - 49578535 agaaaattaccgacttagcaatattgaaatgttc-gccctcaattattagctatattcagcctgccgtgtaattgatct---aaaaaaaaaa----------------gtcaggtttattccta---tccaactgatacttcg i calJac3.chr19 I 645 C 0 e mm10.chr1 178691214 532 + 195471971 I e canFam3.chr7 36266357 398 + 80974532 I a score=40633.000000 s hg38.chr1_KI270759v1_alt 80686 14 + 425601 taccttttgaGCCC s panTro4.chr1 224829585 14 + 228333871 taccttttgaGCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226187093 14 - 229942017 taccttttgaGCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140076287 14 - 143122389 taccctttgaGCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16795121 14 - 229590362 taccctttgaGCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223555572 14 - 227556264 taccctttgaGCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16606939 14 - 220367699 TACCCTTTGAGCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82404762 14 + 85787240 taccctttgaGCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14087057 14 - 49578535 tacccttCAAGCCC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36266755 14 + 80974532 TAACTCTGGCACGG i canFam3.chr7 I 398 C 0 e mm10.chr1 178691214 532 + 195471971 I a score=2250307.000000 s hg38.chr1_KI270759v1_alt 80700 709 + 425601 AGTGACTCCGGTG-CCTTGATGGGGGCCGGGGGCTATGACCCAGGCTTTGCTGAGC-GATGAGGGAGCGTGCTACTTCTGGGGTCAGGGCTGGAGGGCTCCAGCTGCCCATCTGGGCTG----------CCACTATGGAGGAGAGC-TAGACATTGACCACCCACCATACAGGATGTGTTTGCCTCCCCCTCACTCACACCCTGGTTGTGGCGTA-----GGTAAACACAGCAAGGCTCAG-AGGGCTCCAGGAACCTGGCTTTAAGATTGCCATTAGCATCATTTCCTCC-TTAAACAACCTCCTATTTACAGCTC-TCCATCGATAAGATATGCAATGAACAACTTCATCAGGTTAAACTGCAGCAAATGTCAC----CACTTATTTTGTCACTCTCTGATCTTGGGGGGAGAAAAACAGTGCAGCATAAAATATTGAACTGTTTAC----TCAGTATTT-AGTTCATTCAGTGTTTTCGGATGCCCGCTACGTGCCA-G------------CGGGGA-GTAAAGATGAGACAGGCTTAGTCCTTCTCTTGAGGGATCTCACCAAGTGCAGTGTT-TGGTGACGCAGGTCACACTGGGGACA-TGCCATGGCAGGGGCACAG-----ATATCA-GCTGGGGGAGCAGAG-ATGAAGGCCAGATACGAATTCC-CCTGCGC-ATCTGAAAGA-ATGC--TTCA---------------TAGCT--TTGAATTAGATGAA-CTGTTTATAGGAACGGTAATCCAGAAACAAGTACTAAATGTTGT s panTro4.chr1 224829599 705 + 228333871 AGTGACTCCGGTG-CCTTGATGGGGGCCGGGGGCTATGACCCAGGCTTTGCTGAGC-GATGAGGGAGCGTGCTACTTCTGGGGTCAGGGCTGGAGGGCTCCAGCTGCCCATCTGGGCTG----------CCACTATGGAGGAGAGC-TAGACGTTGACCACCCACCATACAGGATGTGTTTGCCTCCCCGTCAC----ACCCTGGTTATGGCGTA-----GGTAAACACAGCAAGGCTCAG-AGGGCTCCAGGAACCTGGCTTTAAGATTGCCATTAGCATCATTTCCTCC-TTAAACAACCGCCTATTTACAGCTC-TCCATCGATAAGATATGCAATGAACAACTTCATCAGGTTAAACTGCAGCAAATGTCAC----CACTTATTTTGTCACTCTCTGATCTTGGGGGGAGAAAAACAGTGCAGCATAAAATATTGAACGGTTTAC----TCAGTattt-agttcattcagtgttttcggatgcccgctacgtgcca-g------------ggggga-gtaaagatgagacaggcttagtccttctcttgagggatctcaccaagtgcagtgTT-TGGTGACGCAGGTCACACTGGGGACA-TGCCATGGCAGGGGCACAG-----ATATCA-GCTGGGGGAGCAGAG-ATGAAGGCCAGATACGAATTCC-CCTGGGC-ATCTGAAATA-ATGC--TTCA---------------TAGCT--TTGAATTAGATGAA-CTGTTTATACGAATGGTAATCCAGAAACAAATACTAAATGTTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226187107 705 - 229942017 AGTGACTCCAGTG-CCTTGATGGGGGCCGGGGGCTATGACCCAGGCTTTGCTGAGC-AATGAGGGAGCATGCTACTTATAGGGTCAGGGCTGGAGGGCTCCAGCTGCCCATCTGGGTTG----------CCACTATGGAGGAGAGC-TAGACGTTGACCACCTACCGTACAGAATGTGTTTGCCTCCCCCTCAC----ACCCCGCTTATGATGTA-----GGTAAACACAGTGAGGCTCAG-AGGGCTCCAGGAACCTGGCTTCAAGATTGCCATTAGCATCATTTCCTCC-TTAAACAACCTCCTATTTACAGCTC-TCCATTGATAAGATATGCAATGAACAACTTCATCAGGTTAAACTACAGCAAATGTCAC----CACTTATTTTGTCACTCTCTGATCCTGGGGGGAGAAAAACAGTGCAGCATAAAATATTAAACTGTTTAT----TCAGTATtt-cgttcattcagtgttttcagatgcccaccatgtgccagg------------ggggga-gtaaagatgagacacgcttagtccttctcttga-ggatctcacCAAGCACAGTGTT-TGGTGACGCAGGTCACACTGGGGACA-TGCCATGGCAGGGGCACAG-----TTGTCA-GCTGGGGAAGCAGAG-ATGAAGGCCAGATATGAATTCC-CCTGGGC-ATCTGAAAGA-ATGC--TTCA---------------TAGCT--TTGAATCAGATGAA-CTGTTTATAGGAACGGTAATCCAGAAACAAATACTAAATGTTAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140076301 705 - 143122389 AGTGACCCCGGTG-CCTTGATGGGGGCCGGGGACTATGACCCAGGCTTTGCTGAGC-AATGAGGGAGCATGCTACTTCTGGGGTCAGGGCTGGAGGGCTCCAGCTGCCCATCTGGGTTG----------CCACTATGGAGGAGCGCTTAAACGTTGACCACCCGCCATACAGAATGTGATTGCCTCCCCCTCAC----ACCCCGGTTATGGTGTA-----GGTCAATACAGCAAGGCTCAG-AGGGTTCCAGGAACCCGGCTTCAAGATTGCCATTAGCATCATTTCCTCC-TTAAACAACCTCCTGTTTATGGCTC-TCCATTGATAAGATATGCAATGAACAACTTCATCAGGTTAAACTACAGCAAATGTCAC----CACTTATTTTGTCACTTCCTGATCCT-GGGGGAGAAAAACAGTGCAGCATAAAATATTTAACTGTTTAT----TCAGTattt-agttcattcagtgtttttggatgcccactacgtgcca-g------------gaggga-gtaaagatgagacaggcttagtccttctcttgagggatctcacCAAGCGCAGTGTT-TGGTGATGCAGGTCACACTGGGGACA-TGCCATGGCAGGGGCACAG-----ATGTCA-GCTGGGGGAGCAGAG-ATGAAGGCCAGATATGAATTCC-CCTGGGC-ATCTGAAAGA-ATGC--TTCA---------------TAGCT--TTGAATTAGATGAA-CTGTTTATAGGAATGGTAATCCAGAAACAAATACTAAATGTTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16795135 725 - 229590362 AGTGACTCCGGTG-CCTTGATGGGGGCCGAGGGCTCTGACCCAGGCTCTGCTGAGC-GATGGGGGAG-ATGTTACTTCTGGAGTCAGGGCTGGAGGGTTCCAGCTGCCCATCTGGGTTGCCACTCTCCTCCACTGTGGAGGAGAGC-TAGATGTTGACCACCCACCATATGGAATGTGTTTGCT-CCCCCTCAC----ATCTCGGTCATGGTGTG-----GGTAAACACAGCGAAGCTCAG-AGGGCTCCAGGAACCTGGTTTCAAGATCGCCATTAGCATCGTTTCCTCC-TTAAGCAACCTCCTATTTACAGCTC-TCCATTGATAAGATATGCAATGAACAACTTCATCAGGTTAAACTGCAGCAAATGTCAC----CACTTATTTTGTCACTCTCTGATCCTGGGGGGAGAAAAGCAGTGCAGCATAAAACATTGAACTATTTAT----TAAGCattt-agttcattcaatgttttcggatgcccaccatgtgcca-ggtgtttgcggctgggggg-acaaagatgagataggcttagtccttctcttgagggatctcacCAAGCGCAGTGTT-TGGTGATGCAGGTCACACTGGGGACA-TGCCATGGCAGGGGCACAG-----ATGTCA-GCTGGAGGAGCAGAG-ACGAAGGCCAGATACAAATTCC-CCTGGGT-ATCTGAAAGA-ATGC--TTCG---------------TAGCT--TTGAATGAGATGAA-ATGTTTATAGGAATGGTAATCCAGAAACAAATACTAAATATTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223555586 725 - 227556264 AGTGACTCCGGTG-CCTTGATGGGGGCCGAGGGCTCTGACCCAGGCTCTGCTGAGC-GATGGGGGAG-ATGTTACTTCTGGAGTCAGGGCTGGAGGGTTCCAGCTGCCCATCTGGGTTGCCACTCTCCTCCACTGTGGAGGAGAGC-TAGATGTTGACCACCCACCATATGGAATGTGTTTGCC-CTCCCTCAC----ATCTCGGTCATGGTGTG-----GGTAAACACAGCGAGGCTCAG-AGGGCTCCAGGAACCTGGTTTCAAGATCGCCATTAGCATCGTTTCCTCC-TTAAGCAACCTCCTATTTACAGCTC-TCCATTGATAAGATATGCAATGAACAACTTCATCAGGTTAAACTGCAGCAAATGTCAC----CACTTATTTTGTCACTCTCTGATCCTGGGGGGAGAAAAGCAGTGCAGCATAAAACATTGAACTATTTAT----TAAGCattt-agttcattcaatgttttcggatgcccaccacgtgcca-ggtgtttgcggctgggggg-acaaagatgagataggcttagtccttctcttgagggatctcacCAAGCGCAGTGTT-TGGTGATGCAGGTCACACTGGGGACA-TGCCATGGCAGGGGCACAG-----ATGTCA-GCTGGAGGAGCAGAG-ACGAAGGCCAGATACAAATTCC-CCTGGGT-ATCTGAAAGA-ATGC--TTCG---------------TAGCT--TTGAATGAGATGAA-CTGTTTATAGGAATGGTAATCCAGAAACAAATACTAAATATTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16606953 725 - 220367699 AGTGACTCCGGTG-CCTTGATGGGGGCTGAGGGCTCTGACCCAGGCTCTGCTGAGC-GATGGGGGAG-ATGTTACTTCTGGAGTCAGGGCTGGAGGGTTCCAGCTGCCCATCTGGGTTGCCACTCTCCTCCACTGTGGAGGAGAGC-TAGACATTGACCACCCACCATACGGAATGTGTTTGcc-cccccTCAC----ATCTCGGTCATGGTGTG-----GGTAAACACAGCGAGGCTCAG-AGGGCTCCAGGAACCTGGTTTCAAGATCGCCATTAGCATCGTTTCCTCC-TTAAGCAACCTCCTATTTACAGCTC-TCCATTGATAAGATATGCAATGAACAACCTCATCAGGTTAAACTGCAGCAAATGTCAC----CACTTATTTTGTCACTCTCTGATCCgggggggAGAAAAGCAGTGCAGCATAAAACATTGaactatttat----taagcattt-agtTCATTCAGTGTTTTCGGATGCCCACCATGTGCCA-GGTGTTTGGGGCTGGGGGG-ACAAAGATGAGATAGGCTTAGTCCTTCTCTTGAGGGATCTCACCAAGCGCAGTGTT-TGGTGATGCAGGTCACCCTGGGGACA-TGCCATGGCAGGGACACAG-----ATGTCA-GCTGGGGGAGCAGAG-ACGAAGGCCAGATACAAATTCC-CCTGGGT-ATCTGAAAGA-ATGC--TTCG---------------TAGCT--TTGAATGAGATGAA-CTGTTTATAGGAATGGTAATCCAgaaacaaatagtaaatattgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82404776 713 + 85787240 AGTGACTCCGGTG-CCTTGATGGGGGCCGAGGGCTCTGACCCAGGCTCTGCTGAGC-GATGGAGGAG-ATGTTACTTCTGGAGTCAGGGCTGGAGGGTTCCAGCTGCCCATCTGGGTTG----------CCACTGTGGAGGAGAGC-TAGACGTTGACCACCCACCATACAGAATGTGTTTGCC-CCCCCTCAC----ATCTCGGTCATGGTGTG-----GGTAAACACAGCGAGGCTCAG-AGGGCTCCAGGAACCTGGTTTCAAGATCGCCATTAGCATCGTTTCCTCC-TTAAGCAACCTCCTATTTACAGCTC-TCCATTGATAAGATATGCGATGAACAACTTCATCAGGTTAAACTACAGCAAGTGTCAC----CACTTATTTTGTCACTTTCTGATCC-GGGGGGAGAAAAGCAGTGCAGCATAAAACATTGAACGGTTTAT----TCAGcattt-agttcactcagtgtttttggatgcccaccacgtgcca-ggtgtttggggctgggggg-acaaagatgagacaggcttagtccttctcttgagggatctcacCAAGCGCAGTGTT-TGGTGATGCAGGTCACACTGGGGACA-TGCCATGGCAGGGGCACAG-----ATGTCA-GCCGGGGGAGCAGAG-ACGAAGGCCAGATACAAATTCC-CCTGGGT-ATCTGAAAGA-ATGC--TTC----------------TAGCT--TTGAATGAGATGAA-CTGTTTATAGGAATGGTAACCCAGAAACAAATACTAGATATTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14087071 722 - 49578535 AGTGACCCCAGTG-CCTACATGGGGGCCGGGGACTATGACCCAGGCTTCACTGAGCAAATGGGGGAGCATGCTACTTCTGGGGTCGGGGCTGGGGGGCTCCAGCTGCCCATCTGCATTG----------CCATTATGGAGCAGGGC-TAGATGCTGACCACCCACCACACAGAATGTGTGTGCCACCCCCTCAG----ACCTCAGTCACTGTGTG-----GGTAAACACAGCGAGGCTCAG-CAGGCTCCAGGAAGCTGGCTTCAGGATCGCCATTCGCCTTGTCTCCACCTTTAAACAGCCTCCCGTTTACAGCTC-TCCATTGATAAGATACGCAATGAACAACTTCATCAGGTTAAGCTACAGCAAATGTCAC----CACTTATTTTGTCATTCTCTGATCCT-CGGGGAGAAGAACAGCACAGCCTAAAATACTGAACTGTTTATTGAGTGAGTGTTT-AGttcattcagtgttttgggatacccgctacctgcca-ggtgtttggggctggggga-gtaaagatgagacaggctgagtccttctctctagggatctca-caggcgcagtgCT-TGA-GATGCAGGTCATACTAGGGACA-TGCCATGGCAGGGGTGCAG-----ATGTCA-GCTGGGGGCGAGGAG-ATGGAGGCCAGATATGGATTCC-GCCGGGT-ATCTGAAAGA-ATGC--TTCA---------------TACCTTCTTTTAGAAGATGAA-CTGTTTAAAGGAAAGGTAATCCAGAAACAAATACTAAGCGTTGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178691746 670 + 195471971 AGTTATTTCTTGC-TCCTAGTGGTAGGCAGAAACCGTAACCTAGACTCTGCCTGAT-------------TGCAGCTTGTGGGATCAG-------GAATCCCTGCTGCCCAGCTCAGTTG----------CTCCTGTGAAGAA---C-T-----CTGACCCCTGATGGGATGGTTTATGCTGGCC-TCCCCTTACCTCCACCCCACACTTGCTGTGTCAGCAGTAAACACAGCAAAGGTCAT-AGTGTCCTACTGACCTGGCTCCAGGATCCCCCT--GCATTGTCTTC-CT-GGAAATGAGCTCCTTCTTAAAGCTTATGTATTGATAAGCTAGGCATTGAACAACTGGGGCAGCT--AACTGTGGTAAGC-TCACTTGTTACTTACTCTGTCAGCCTCTGATGCTGGGAGAAGAAAAATGG---------------------GTCTTT----CTGATACTCAAATTCCTTTAGTGTTTCAG---ACTCACAAAATACCA-GGTGTTGGCATCTGGGAGACACAGAGATAAGTCAGACTGAGACCCTGTCTTCAGGAGTCTTGGCTCACGAGGTTCTCTGGTG-------------TGGGACCAGTGTCAATGGACGAGCATAGTTACAATGTCA-------------------TAGAGCCCGGCGTGAATTCC-ACTGAACAATCTGGAAAATGGGC--TTTAGTACTGGTTATCTACCTGCT--ATGTTTTAGGTGACTTTGTGGATACAAGAAGTAATCCTGAAAGAAATCATCACTGTAGT i mm10.chr1 I 532 I 2044 s canFam3.chr7 36266769 663 + 80974532 AGTAAGTCTGGTGCCCTTGGTGGTGGGTGA-GACTATGACCTAGAC-----------GATGGTGCAG-----------TGGGCTCAAG------GGACCCCTGCTGCCCAGCTGGGCCG----------CAGCTCTGGAGGAGAAC-CAGGCTCTGGCCACCCACAGTGCAGAAGAATCTTGCCCCATTCCCCC----ACCTCA---------TC-----CATAAACACTGCAAGGGTCATCAGGATCCCACTGACCTGGCTTCAGGACTCGTATTAGCATTGTTCCTCCT-TTAAACAGCCTCCT-TTTAAAGCCA-TCCATTGATAAGATAAGTGATGAATAACCTCATCACCT----------------TCAC----C------TGTGTCGCTCTCTGATCCAGGGAGGAGAAAAACAGTTCAGCTGAAGA-----ATCTATTTAA---GTCAGTATTTTCATTCATTCAGTGTTTTGAGATGTCCACAGTGTGTGG-GACGTCTGGAGC-TGGGAA-GTAAAAATGAGGAAAGA--------TCCCTGAAGGGAGCTCCCTGAGCATGGCCCT-C--TGATGTGGATCAGACTGGGGTCAGTGCCAGGGCAGAAGCGCAG-----ACGCTGTGCTGTGGGAAAACAGAATGGAAGCCAGACACACATTCCATCCAGGT-ATCTGGAAAA-ATGCATTTTAATATCAGTTACT---TAGCT--GTCAATTACACAGA-CTGTTTGTAGCAGTTGTAATTCAGAAACAAATAGCAACTACCGT i canFam3.chr7 C 0 C 0 a score=115930.000000 s hg38.chr1_KI270759v1_alt 81409 61 + 425601 ATGGTAGGGTGTACTAGAGGCTGTATTATCTGACCTAGGTTTttttttgttttttgttttt---------- s panTro4.chr1 224830304 61 + 228333871 ATGGTAGGGTGTACTAGAGGCTGTATTATCTGACCTAGGTTTttttttgttttttgttttt---------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226187812 44 - 229942017 ATGGTAGGGTGTACTAGAGGCTGTATTATCTGATCTAGCTCttt--------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140077006 46 - 143122389 ATGGTAGGGTGTACTAGAGGCTGTATTGTCTGATCTAGCTCttttt------------------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16795860 51 - 229590362 ATGGTAGGGTGAACTAGAGGCTGTATTATCTGATCTAGCTCCttttttttt-------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223556311 51 - 227556264 ATGGTAGGGTGAACTAGAGGCTGTATTATCTGATCTAGCTCCCtttttttt-------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16607678 48 - 220367699 GTGGTAGGGTGAACTAGAGGCTGTATTATCTGAtctagctcc---tttttt-------------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82405489 50 + 85787240 ATGGTAGGGTGAACTAGAGGCTGTATTATCTGATCTAGCTCt-tttttttt-------------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14087793 42 - 49578535 ATGGTTGGGTGAACTAGAGACTGTATTATCTTATCTAACTCT----------------------------- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36267432 61 + 80974532 GTTATTGGATGAAGAAGAGGCTGCATTATCCAGTCTAGCTCTTGATTCCAT----------CTCTAAAACT i canFam3.chr7 C 0 C 0 e mm10.chr1 178692416 2044 + 195471971 I a score=1513876.000000 s hg38.chr1_KI270759v1_alt 81470 559 + 425601 tgttttttgtttt------------ttgagatggagtttcactcttgtcacccaagctggagtgcagtggcgtgatctctgctcgctgcaacctctgcctccccagttcaagcgattctcctgcctcagcctcccgagtagctgggactacagatgcccatcaccctacctggcaaatttttgtatttttattagagatgcggttttaccatgttggccaggctggtttcaaactc-taagctcaggtgatccacctgccttggcctcccaaagtcctgggattacaggcattagccactatgcccggcTCCAATCTAACTCTTGATTCCTCCTTTATAACTATTCatcagactgagcaacttggcaagaacctgactatc--------------------------------------------aaaaacaaattagccaggcatggtggcacatgcctgtggtcccagtgctttgggaggctggggcgggaggatcgcttgagcctgcaggtctagactgcagtgagctatgatcacgccactgccctccagcctaaacaacagagtgagaccctatctcaaaaaaaCCCGCAACAAACTAAAAAAAATCCCCG- s panTro4.chr1 224830365 558 + 228333871 tgtttttt--ttt------------ttgagatggagtttcactcttgtcacccaagctggagtgcagtggcgtgatctctgctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggactacagatgcccatcaccctacctggcaaatttttgtatttttagtagagatgcggttttaccatgttggccaggctggtttcaaactcctgacctcaggtgatccacctgccttggcctcccaaagtcctgggattacaggcatgagccactatgcccggcTCCAATCTAACTCTTGATTCCTCCTTTATAACTATTCatcagactgagcaacatagcaagaacccgactatc--------------------------------------------aaaaacaaattagccaggcatggtggcacatgcctgtggtcccagtgctttggcaggctggggcgggaggatcgcttgagcctgcaggtctagactgcagtgagctatgatcacgccactgccctccagcctaaacaacagagtgagaccctatctcaaaaaaaCCCGCAACAAACTAAAAAAAATCCCCG- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226187856 557 - 229942017 --tttttt--ttt------------gagagatggagtttcgctcttgtcacccaggctggagtgcagtggcgtgatctctgctcactgcaacctctgcctcccagattcaagcgattctcctgcctcagcctcccgagtagctgggattacagatgcccatcaccctacctggcaaatttttgtatttttagtagagatgcggttttaccatgttgtccaggctggtctcaaactcctgacctcaggtgatccacatgccttggcctcccaaagtcctgggattacaggcatgagccactatgcccggctCCGATCTAACTCTTGATTCCTCCTTTATAACTATTCatcagactgagcaacatagcaagaacccgactatc--------------------------------------------aaaaacaaattagccaggcgtggtggcacatgcctgtggtcccagtgctttgggaggctggggcgggaggattgcttgagcctgcaggtctagactgcagtgagctatgatcacgccattgcactgcagcctagacaacagagtgaaaccctatctcaaaaaacaccgcaacaaacaaaaaaaaaaTCCCGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140077052 556 - 143122389 --tttttt--ttt------------gagagatggaggtttgctcttgtcacctaggctggagtgcagtggcgtgatctctgctcactgcaacctctgcctcccaggttctagtgattctccagcctcagcctcccgagtagctgggactacagatgcccatcaccctacctggcaaatttttgtatttttagtagagatgcggttttaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctgccttggcctcccaaagtcctgggattacaggcatgagccactatggctggccCCGATCTAACTCTTGATTCCTCCTTTATAACTATTCatcagactgggcaacatagcaagaacccaactatc--------------------------------------------aaaaacaaatcagccaggcatggcggcacatgcctgtggtcccagtgctttgggaggctggggcgggaggatggcttgagcctgcaggtctagactgcagtgagctatgatcacgccattgcactccagcctagacaacagagtgagaccctatctcaaaaaaaaccgcaacaaacaaacaaaaaTCCCCT- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16795911 594 - 229590362 --tttttt--ttt------------gagagacagagtctcgctcctgtcacccaggctggagtgcagtggcaggatctctgctcactgcaacctctgcctcccaggttcaagcgattcttctggctcagcatcccaagtagctggccctactgatgcctgtcaccctacctggcaaattttagtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcca-ctgcctcggcctcccaaagtcctgggattacaggcgtgagccaccgcacccagccCTGATCTAACTCTTGATTCCTGCTTTATAACTATTCATCAGACTGGGCAACATAGTAAGAACCCGCTTATCAAAAAAAAAAAACAAAAAACA--AACAACAACAACAACAacaacaaaaacaaactagccaggcttggtggcacatggctgtggt-ccggtgctttgggaggctggggtgagagggtcgcttgagcctggaggtctagactgcagtgagctatgatcatgccattgcactccagcctagacaacagagtgagaccctatctcagaaaacaccccaacaaac--aaaaaaaTCCCCT- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223556362 592 - 227556264 --tttttt--ttt------------gagagacagagtctcgctcctgtcacacaggctggagtgcagtggcaggatctctgctcactgcaacctctgcctcccaggttcaagcgattcttctggctcagcatcccaagtagctggccctactgatgcctgtcaccctacctggcaaattttagtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcca-ctgcctcggcctcccaaagtcctgggattacaggcgtgagccaccgcacccagccCTGATCTAACTCTTGATTCCTGCTTTATAACTATTCATCAGACTGGGCAACATAGTAAGAACCCGATTATc--aaaaaaaaaacaaaaaaca--aacaacaacaacaacaacaacaaaaacaaactagccaggcttggtggcacatggctgtggt-ccggtgctttgggaggctggggtgagagggtcgcttgagcctggaggtctagactgcagtgagctatgatcatgccattgcactccagcctagacaacagagtgagaccctatctcagaaaacaccccaacaaac--aaaaaaaTCCCCT- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16607726 588 - 220367699 --tttttt--ttt------------gagagacagagtctcgctcctgtcacccaggctggagtgcagtggcaggatctctgctcactgcaacctctgcctctcaggttcaagcgattcttctggctcagcatcccaagtagctggcccTACTGATGCCTGTCACCCTACCTGgcaaattttagtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatcca-ctgcctcggcctcccaaagtcctgggattacaggcgtgagccaccgcacccagccctgatcTAACTCTTGATTCCTGCTTTATAACTATtcatcagactgggcaacatagtaagaacccgactatc-----aaaaaaacaaaaaaca--aacaacaacaacaacaacaacaaaaacaaactagccaggcctggtggcacatggctgtggt-ccggtgctttgggaggctggggcgagagggtcgcttgagcctggaggtctagactgcagtgagctatgatcatgccattgcactccagtctagacaacagagtgagaccctatctcagaaaaaaccacaacaaac---aaaaaatcccct- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82405539 593 + 85787240 --tttttt--ttt------------gagagac--agtcttgctcttgccacccaggctggagtgcagtggcaggatctctgctcgctgcaacctctgcctcccaggtccaggtgattcttctggctcagcctcccaagtagctgggcctactgatgcccatcaccctacttggcaaagtttagtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtcctgggattacaggcgtgagccaccgcacccagccCTGATCTAACTCTTGATTCCTGCTTTATGACTATTCatcagactgggcaacatagtaagaacctgactatc-aaaaaaacaaacaacaaacaacaacaacaacaacaacaacaacaaaaacaaactagtcaggcctggtggcacgtggctatggt-ccggtgctttgggaggctggggcgggagggtcgcttgagcctggaggtctagactgcagtgagctatgatcacaccattgcactccagcctagacaatagagtgagaccctatctcagaaaaaaCCGCAACAAAC---AAAAACTCCCCT- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14087835 560 - 49578535 --CTTGTT--TTTGCGGGGTGGGGGGAgagacagagtctcattcttgtcacgcaggctggagtgcagtggctttatcttcgctcactgcgacctctgcctcctggattcaagtgattctcctgcctcagcctcccaagtaggtgggattacaggtgcccgccaccccact------aattttttatttttagtagagacggggttctaacacgttgaactggctggtctcaaactcctgacctcaggtgatccacctgccccagcctcccaaagtgctgggattacaggcatgagccactgtgcctggccCCAATCTAACCCTTGATTCCTCCTTTATAACTATTCaccagcctgagcaacat-gcaataccccaactata-----------------------a--------------------aaaaaaaaattagccaggcatggtggcatgtgcctgtggtctcagtgctttgggaggctggggtgggaggaccacttgatcctggaggtctagatttcagggagctatgatcacgccagtgcatgccagcctagacagcagagtgagaccctgtctcagaaaa-accccaataaac-aaaaaaaaTCCCAT- i calJac3.chr19 C 0 C 0 e mm10.chr1 178692416 2044 + 195471971 I e canFam3.chr7 36267493 0 + 80974532 C a score=746559.000000 s hg38.chr1_KI270759v1_alt 82029 241 + 425601 ATATTTCTGCTTCCCTAATATGCATGATACCAGCAGCAGACAGGGCTG-CTTTGACACCTGCCCAAAGTGTAGCTGGACATCTATGTAGACTCATGGAG---TTTGGGGAGAATAGGAAGGCGTCAAGGCTAAGTACAGGTCCCATCTCTCTCCCTCATCCACTTCCCCCAACCTCTGGTCATTCACCAAGAAACGTTCACAGTCCTGGGCTGCGTTTACTAACTTTGTTCTCATGCGT-------------------------------------------------------------------------------------GCTTCT s panTro4.chr1 224830923 241 + 228333871 ATATTTCTGCTTCCCTAATATGCATGATACCAGCAGCAGACAGGGCTG-CTCTGACACCTGCCCAAAGTGTAACTGGACATCTGTGTGGACTCATGGAG---TTTGGGGAGAATAGGAGGGCGTCAAGGCTAAGTACAGGTCCCGTCTCACTCCCTCATCCACCTCCCCCAACCTCTGGTCATTCACCAAGAAACGTTCACAGTCCTGGGCTGCGGTTACTAACTTTGGTCTCATGCGT-------------------------------------------------------------------------------------GCTTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226188413 241 - 229942017 ATATTTCTGCTTCCCTAATATGCATGATACCAGCAGCAGACAGGGCTG-CTCTGACACCTGCCCAAAGTGTAAATGGACATCTGTGTGGACTCATGTAG---TCTGGGGAAAACAGGAAGGCGTCAAGGCTAAGTACAGGTCCCATTTCACTCCCTCATCCACTTCCCCCAACCTCTGGTCATTCACCAAGAAATGTTCACAGTCCTGGGCTGCGGTTACTAACTTTGGTCTCACGCGT-------------------------------------------------------------------------------------GCTTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140077608 240 - 143122389 ATATTTCTGCTTCCCTAATATGCACGATAACAGCAGCAGACAGGGCTG-CTCTGACACCTGCCCAAAGTGTAACTGGACATCTGTGTGGACTCCTGGAG---TTTGGGGAGAATAGGAAGGCGTCAAGGCTAAGTACAGGTCCCATCTCTCTCCCTCATCCAC-TCCCCCAACCTCTGGTCATTCACCAAGAAACGTTCACAGTCCTGGGCTGTGGTTACTAACTTTGATCTCATGCGT-------------------------------------------------------------------------------------GCTTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16796505 241 - 229590362 CTATTTCTGCTTCCCTTATATGCACAATACCAGCAGCAGGCAGGGCTG-CTCTGACACCTGCCCAAAGTGTAACTGGACGTCTGTGTGGACTCATGGAG---TCTGGGGAGAATAGGAAGGCGTCAAGGCTAAGTACAGGTCCCATCTCTCTCCCTCATCCACTTCCCCCAACCTCTGGTCATTCACCAGGAAATGTTCACAGTCCTGGGCTGCGGTTACTAACTTTGGTCTCATGTGT-------------------------------------------------------------------------------------GCTTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223556954 241 - 227556264 CTATTTCTGCTTCCCTTATATGCACAATACCAGCAGCAGGCAGGGCTG-CTCTGACACCTGCCCAAAGTGTAACTGGACGTCTGTGTGGACTCATGGAG---TCTGGGGAGAATAGGAAGGCGTCAAGGCTAAGTACAGGTCCCATCTCTCTCCCTCATCCACTTCCCCCAACCTCTGGTCATTCACCAGGAAATGTTCACAGTCCTGGGCTGCGGTTACTAACTTTGGTCTCATGTGT-------------------------------------------------------------------------------------GCTTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16608314 241 - 220367699 CTATTTCTGCTTCCCTTATATGCCCGACACCAGCAACAGGCAGGGCTG-CTCTGACACCTGCCCAAAGTGTAACTGGACGTCTGTGTGGACTCATGGAG---TCTGGGGAGAATAGGAAGGCGTCAAGGCTAAGTACAggtcccatctctctccctcatcCACTTCCCCCAACCTCTGGTCATTCACCAGGAAATGTTCACAGTCCTGGGCTGCGGTTACTAACTTTGGTCTCATGTGT-------------------------------------------------------------------------------------GCTTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82406132 241 + 85787240 CTATTTCTGCTTCCCTTATATGCCCGATACCAGCAGCAGGCAGGGCCG-CTCTGACACCTGCCCAAAGTGTAACTGGACATCTGTGTGGACTCGTGGAG---TCTGGGGAGAATAGGAAGGCATCAAGGCTGAGTACAGACCCTATCTCTCTCCCTCATCCACTTCCCCCAACCTCTGGTCATTCACCAGGAAATGTTCACAGTCCTGGGCTGCGGTTACTAACTTTGGTCTCATGCGT-------------------------------------------------------------------------------------GCTTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14088395 228 - 49578535 ATATTTCTGCTTCCCTTAAATGCACAATACCAGCAGCAGACAGGGCTGCCCCTAACACCC-CCCACGGTGTAACTGGACATCTGCGTGGACTCATGGAG---TTTGGAGAGAGCAGGAAGGCGT----------TGCAAGCCCCATTT--CTCCCTCATCCACTTCACCCATCCTCTGGTCATTCACCAAGACG-GTTCACAGCCCTGCGCTGTGGTTTCTAAGTTGGGTCTAATGTGT-------------------------------------------------------------------------------------GCTTCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36267493 303 + 80974532 ATCTTTCTGCTTCCTGTGAATGCGTGACATTAGCAGCAGGCAGGGCTG-CCCTGACACCTCCCCAGAGTGTCACCGGCCATCGATATGGACCCAAGCAGGATGATGGGCAGAATGGGAAGGTGCCAAG-------------TCCACTTAACT-CCTCATCTGCTT---------GCTGCTCAC---CCAGGAAATGTTATGGGTTCTGGGCTGCAGTTACCAACATTGGTATAATATGTATTAATATTCtttttttaaagattttatttatttattcatgagagacacagagagaagcagagacacaggcagagggaaaagcaggctcct i canFam3.chr7 C 0 I 106 e mm10.chr1 178692416 2044 + 195471971 I a score=3221889.000000 s hg38.chr1_KI270759v1_alt 82270 1022 + 425601 ATTTTTGAGGCCAGAATAGGCCATTTTGAAA----------------CCTCTGGTTCCAG-CCTTCCCCTTAGGAAAGTGAGCGGCAGAGTTGCGACCTCTCTCCCTGGTG----------GCTCATCTCTGGGAGACGAGCGCTGTCCTCAGAAGTGACGTGGAAGCTATCGTGACAGAGGTGTTTTGGGTCAGAAACTTTCCATTAGTATTTGGAGAAAATTGATCTCATTGGAGAAAGGACCATGATATGAACAAGTCAGGTTTTTTTTTTATCATAGTA--TTTTTTAAAAAAC---GTTCTAAGGAGAAGATTTACATGACCACTTTCTTTCTG-ACGGATACTTCTTCCTGGATGGAAGGAATAGGAAAAGTACATAAAATAGCTCACA-TGGAAAATATTTTTCCTTTGATGAAAAGTGAAACTAAAG-TAGCAC----TTGCAGGATGCACTTTTAATTCCTGAAGCAAAAGCCG-----------------CTACTTGCAATGCTAAGTCACATTGACGTCCCAGTCCTGATTGGGCCAGATTTCCTCTTTCTTTCTCA------TCTTG------------TGTTAGCATTT-------------AAAACTGCCAAGATAATGACTATGTTAATTAATCTGGCCCAGGATATTTTCCCCATAAACAGGAGTGTGACTGAGTAGG--TCCCTCGTTCCTTCTACGTCTGCCTCCCGCCTTCCCTAGAGAGAAGTGAATCTAAGTCATGCTGGAAAGGTGGTGCCTAAACTGTACCTTAAGGGGGAAAGGGCTAACAGCCCTTC--TCCCATAGCCCTTTCAGCACTGTGATCAATCTGACCCTTACACTCAATTTGTCTACAATTGTATCTCTATTAGCAA--TGCTGCTCTGAGTCTG-------TTGGGTGGAAGACATCC----AATTGGTGGGTTGTTTCTGAACACTGGACCAGCCCAAGGACTATTTCAAGGAAAGTC----------AGGGTGAGATTT---------------GAACTGTGCGCACCTTTGCCTGAAGCCAGTCTC-CTGTAATTGACTCTGGGACAGTAAGCATTGCAGA--AGACAGCAGCGTCCCTGATG-TTGGAAGG----------AAGTCAGGCTTGCAGT------AAAAGCTTAT s panTro4.chr1 224831164 1022 + 228333871 GTTTTTGAGGCCTGAATAGGCCATTTTGAAA----------------CCTCTGGTTCCAG-CCCCCGCCTTAGGAAAGTGAGCGGCAGAGTCGCAACCTCTCTCCCTGGTG----------GCTCATCTCTGGGAGACGAGCGCTGTCCTCAGAAGTGACGTGGAAGCTATCGTGACAGAGGTGTTTTGGGTCAGAAACTTTCCATTAGTATTTGGAGAAAATTGATCTCATTGGAGAAAGGACCATGATACGAACAAGTCAG-TTTTTTTTTTATCATAGTA--TTTTTTAAAAAAC---GTTCTAAGGAGAAGATTTACATGACCACTTTCTTTCTGGACGGATACTTCTTCCTGGATGGAAGGAATAGGAAAAGTACATAAAATAGCTCACA-TGGAAAATATTTTTCCTTTGATGAAAAGTGAAACTAAAG-TAGCAC----TTGCAGTATGCACTTTTAATTCCTGAAGCAAAAGCCG-----------------CTACTTGCAATGCTAAGTCACATTGACGTCCCAGTCCTGATTGGGCCAGATTTCCTCTTTCTTTCTCA------TCTTG------------TGTTAGCATTT-------------AAAACTGCCAAGATAATGACTATGTTAATTAATCTGGCCCGGGATATTTTCACCATAAACAGGAGTGTGACTGAGTAGG--TCCCTCGTTCCTTCTACATCTGCCTCCTGCCTTCCCTAGAGAGAAGTGAATCTAAGTCATGCTGGAAAGGTGGTGCCTAAACGGTACCTTAAGGGGGAAAGGGCTAACAGCCCTTC--TCCCATAGCCCTTTCAGCACTGTGATCAATCTGACCCTTACACTCAATTTGTCTACAATTGTATTTCTACTAGCAA--TGCTGCTCTGAGTCTG-------CTGGGTGGAAGACATCC----AATTGGTGGGTTGTTTCTGAACACGGGACCAGCCCAAGGAATATTTCAAGGAAAGTC----------AGGGTGAGATTT---------------GAACTGTGCGCACCTTTGCCTGAAGCCAGTCTC-CTGTAATTGACTCTGGGACAGTAAGCATTGCAGA--AGACAGCAGTGTCCCTGATG-TTGGAAGG----------AAGTCAGGCTTGCAGT------AAAAGCTTAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226188654 1058 - 229942017 ATTTTTGAGGCCAGAATAGGCCATTTTGAAACCTGGAGTTAAAAAGTCCTCTGGTTCCAG-CCTGCCCCTTAGGAAACTGAGCAGCAGAGTCGCAACCTTTCTCCCTGTC------------------------AGATGAGCGGTGTCCTCAGAAGTGACATGGAAGCTATTGTGGCAGAGATGTTTTGGGTCAGAAACTTTCCATTAGTATTTGGAGAAAATTGATCGCACTGGAGAAAGGACCATGATATGAACAAGTCAG--TTTTTTTTGGTCATAGTA--TTTTTAAAAAAAC---GTTCTAAGGGGAAGATTTACATGACCGCTTTCTTTCTGGACGGATACTTCTTCCTCGATGGAAGGAATAGGAAAAGTACACAAAACAGCTCACA-TGGAAAATATTTTTCCTTTGATGAAAAGTGAAACTAAAG-TACCGC----TTGCAGTATGCACTTCTAATTCCTGAAACAAAAGCTG-----------------CTACTTGCAATGCTAAGTCACATCAACATCCCAGTCCTGATGGGCCCAGATTTCCTCTGTTTTTCTCA------TCTTGCACATACAATGCTGTTAGCATTTATCGCTGTGTTTGAAAACTGCCAAGATAATGACTATGTTAATCAATCTGGCCCAGGATATTTTCACCATAAACAGGAGTGTGACTGAGTAGG--TCCCTCGTTCCTTCTACATCTGCCTCCCGCCTTCCCTAGAGAGAAGTGAATCTAAGTCATGCTGGAAAGATGGTGCCTAAAGTGTACCTTAAGGGGGAAAGGGCCAACAGCCCTCC--TCCCATAGTCCTTTCAGCACTGTGATCAACCTGACCCTTACATTCAAGTTGTCTACAATTGTATTTCTATCAGCAA--TGCTGCTCTGAGTCTA-------CTGGGTGGAAGATATCC----AACTGGTGGGTTGTTTCTGAACACTGGACCAGCCCAAGGAATATTTCAAGGACAGTC----------AGGGTGAGATTT---------------GAACTGTGCGCACCTTCGCCTAAAGCCAGTCTC-CTGTAATTGACTCTGGGACAGTAAGCATTGCAGA--AGACAGCAGTGTCCCTGATG-TTGGAAGGGTCACCCCTTAAGTCAGGCTTGCAGT------AAAAGCTTAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140077848 1072 - 143122389 CTTTTTGAGGCCAGAATAGGCCATTTTGAAACCTGGAGTTAAAATGTCCCCTGGTTCCAGCCCTTCCCCTTGGGAAACTGAGCAGCAGAGTCGCAGCCTCTCTCCCTGGTG----------GCTCATCTCTGTGAGACGAGTGGTGTCCTCAGAAGTGACATGGAAGCTATTGTGACAGAGATGTTTTGGGTCAGAAACTTTCCATTAGTATTTGGAGAGAATTGATCTCATTGGAAAAAGGACCACGATATGAACAAGTCCG---TTGTTTTTGTCGTAGTA--TTTTTTAAAAAAC---GTTCTAAGGAGAAGATTTACACGACCAGTTTCTTTCTGGACGGATACTTCTTCCTGGATGGAAGGAATAAGAAAAGTATATAAAGTAGCTCACG-TGGAAAATATTTTTCCTTTGGTGAAAAGTGGAACTAAAG-TACCAC----TTGCGGTATGCACTTCTAATTACTGAAGCAAAAGCCG-----------------CCGCTTGCGATGCTAAGTCACATCAACATCCCAGTCCTGATTGGCTCAGATTTCCTCTTTTTTTCTCA------TCTTGCACATACAATGCTGTTAGCATTTACCGCGGTGTTTGAAAACTGCCAAGATAATGACTATGTTAATTAATCTGGCCCAGGATATTTTCACCATAAACAGGAGTGTGACTGAGTAGG--TCCCTCGTTCCTTCTACATCTGCCTCCTGCCTTCCCTAGAGAGAAGTGAATCTAAGTCATGCTGGAAAGATGGTGCCTAAACTGCACCTTAAGGGGGAAAGGGCTAACGGCTGTCC--TCCCATAGCCCTTTCAGCACTGTGATCAATCTGACCCCTACATTCAATTTGTCTGCAATTGTATTTCTATTAGCAG--TGCTGCTCTGAGTGTG-------TTGGGTGGGAGACATCC----AATTGTTGGGTTGTTTCTGAACACTGGACCAGCCCAAGGAATATGTCAAGGAAAGTC----------AGGGTGAGATTG---------------GAACTGTGCGCACCTTCGCCTGAAGCCAGTCTC-CTGTAACTGACTCTGGGACAGTAAGCATTACAGA--AGACAGCAGTGTCCTTGATG-TTGGAAGGGCCACCCCTTAAGTCAGGCTTGCAGT------AAAAGCTTAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16796746 1101 - 229590362 ATTTTTGAGGCCAGAATAGGCCATTTTGAAACCCGGAGTTACAAAGTCCTCTGGTTCCAG-CCTTCCCCTTAGGAAACCGAGCAGCATAGTCACAACCTGTATCCCTGGCGGCTCTTCAGTGCTCATCTCTGTGAGTCGAGCGGTGTCTTCAGAAGTGACGTGGAAGCTATTGTGACAGAGATGTTTTGGGTCAGAAACTTTCCATTAGTATTTGGAAAGAGTTGATCTCATTGGAGAAAGGACCATGATATGAACATGTCAG---TTTTTTTGGTTGTAGTATTTTTTTAAAAAAAC---GTTCTAAGGAGAAGATTTACACGACCACTTTCTTTCCGGACGGATACTTCTTCCTGGAGGGAAGGAATAGGAAAAGTATATAAAACAGCTCACA-TGGAATATATTTTTCCTTTGATGAAAAGTGAAACTAAAG-TACCAC----TTGCAGTATGCACTTTTAATTACTGGAGCAAAAGCCGCTACTTGCAATGCTAAGCTACTTGCAATGCTAAGTCACATCAAC-TCCTGGTCCTGATTGGCCCAGATTTCCTCTTTTATTCTCA------TCTTGCACATACAATGCTGTTAGCATTTATTGCCGTGTTTGAAAACTGCCAAGATAATGACTATGTTAATTAATCTGACCCAGGATATTTTCACCATAAACAGGAGCGTGACTGAGTAGA--TCCCTCGTTCCTTCCACATCTGTCCCCCGCCTTCCCTAGAGAGAAGTGAATCTAAGTCATGCTGGCAAGATGGTGCCTAAACTGCACCTCAAGGGGGAAAGGGCTAACAGCCCTCC--TCCCATAGCCCTTTCAACACTGTGATCAATCTGACCCTTACATTCAATTTGTCTAGAATTGTATTTCTATTAGGAG--TGCTGCTCTGAGCCTA-------CTGGGCGGAAGACACCC----AATTGGTGGGTTGTCTCTGAACACTGGACCAGCCGAAGGAATATTTCAAGGAAAGTC----------GGGGTGAGATTT---------------GAAGTGTGCGCACCTTCACCTAAAGCCAGTCTC-CTGTAATTGACTCTGGGACAGTAAGCATTGCAGAAGAGAGAGCAGTGTCGCTGAGG-CTGGAAGGGTCACCCCTTAAGTCAGGCTTGCAGT------AAAAGCTTAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223557195 1101 - 227556264 ATTTTTGAGGCCAGAATAGGCCATTTTGAAACCCGGAGTTACAAAGTCCTCTGGTTCCAG-CCTTCCCCTTAGGAAACCGAGCAGCATAGTCACAACCTGTATCCCTGGCGGCTCTTCAGTGCTCATCTCTGTGAGTCGAGCGGTGTCTTCAGAAGTGACGTGGAAGCTATTGTGACAGAGATGTTTTGGGTCAGAAACTTTCCATTAGTATTTGGAAAGAGTTGATCTCATTGGAGAAAGGACCATGATATGAACATGTCAG---TTTTTTTGGTTGTAGTATTTTTTTAAAAAAAC---GTTCTAAGGAGAAGATTTACACGACCACTTTCTTTCCGGACGGATACTTCTTCCTGGAGGGAAGGAATAGGAAAAGTATATAAAACAGCTCACA-TGGAATATATTTTTCCTTTGATGAAAAGTGAAACTAAAG-TACCAC----TTGCAGTATGCACTTTTAATTACTGGAGCAAAAGCCGCTACTTGCAATGCTAAACTACTTGCAATGCTAAGTCACATCAAC-TCCTGGTCCTGATTGGCCCAGATTTCCTCTTTTATTCTCA------TCTTGCACATACAATGCTGTTAGCATTTATTGCCGTGTTTGAAAACTGCCAAGATAATGACTATGTTAATTAATCTGGCCCAGGATATTTTCACCATAAACAGGAGCGTGACTGAGTAGA--TCCCTCGTTCCTTCCACATCTGTCTCCCGCCTTCCCTAGAGAGAAGTGAATCTAAGTCATGCTGGCAAGATGGTGCCTAAACTGCACCTCAAGGGGGAAAGGGCTAACAGCCCTCC--TCCCATAGCCCTTTCAACACTGTGATCAATCTGACCCTTACATTCAATTTGTCTAGAATTGTATTTCTATTAGGAG--TGCTGCTCTGAGCCTA-------CTGGGCGGAAGACACCC----AATTGGTGGGTTGTCTCTGAACACTGGACCAGCCGAAGGAATATTTCAAGGAAAGTC----------GGGGTGAGATTT---------------GAAGAGTGCGCACCTTCACCTAAAGCCAGTCTC-CTGTAATTGACTCTGGGACAGTAAGCATTGCAGAAGAGAGAGCAGTGTCGCTGAGG-CTGGAAGGGTCACCCCTTAAGTCAGGCTTGCAGT------AAAAGCTTAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16608555 1104 - 220367699 ATTTTTGAGGCCAGAATAGGCCATTTTGAAACCCTGAGTTACAAAGTCCTCTGGTTCCAG-CCTTCCCCTTAGGAAACCGAGCGGCAGAGTCACAACCTGTATCCCTGGCGGCTCTTCAGTGCTCATCTCTGTGAGACGAGCGGTGTCTTCAGAAGTGACGTGGAAGCTATTGTGACAGAGATGTTTTGGGTCAGAAACTTTCCATTAGTATTTGGAAAGAGTTGATCTCATTGGAGAAAGGACCATGATATGAACATGTCAG---tttttttGgttgtagta-ttttttaaaaaaac---gttcTAAGGAGAAGATTTACACGACCACTTTCTTTCCAGACGGATACTTCTTCCTGGAGGGAAGGAATAGGAAAAGTATATAAAACAGCtcaca-tggaatatatttttcctttgatgAAAAGTGAAACTAAAG-TACCACTTGTTTGCAGTATGCACTTTTAATTACTGGAGCAAAAGCCGCTACTTGCAATGCTAAACTACTTGCAATGCTAAGTCACATCAAC-TCCTGGTCCTGATTGGCCCagatttcctcttttattctca------TCTTGCACATACAATGCTGTTAGCATTTATTGCCGTGTTTGAAAACTGCCAATATAATGACTATGTTAATTAATCTGGCCCAGGATATTTTCACCATAAACAGGAGCGTGACTGAGTAGA--CCCCTTGTTCCTTCCACATCTGTCTCCCGCCTTCCCTAGAGAGAAGTGAATCTAAGTCATGCTGGAAAGATGGTGCCTAAACTGCACCTCAAGGGGGAAAGGGCTAACAGCCCTCC--TCCCATAGCCCTTTCAACACTGTGATCAATCTGACCCTTACATTCAATTTGTCTAGAATTGTATTTCTATTAGGAA--TGCTGCTCTGAGTCTA-------CTGGGCGGAAGACATCC----AATTGGTGGGTTGTCTCTGAACACTGGACCAGCCGAAGGAATATTTCAAGGAAAGTC----------GGGGTGAGATTC---------------GAAGTGTGCGCACCTTCACCTAAAGCCAGTCTC-CTGTAATTGACTCTGGGACAGTAAGCATTGCAGAAGAGAGAGCAGTGTCGCTGAGG-CTGGAAGGGTCACCCCTTAAGTCAGGCTTGCAGT------AAAAGCTTAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82406373 1100 + 85787240 ATTTTTGAGGCCAGAATAGGCCATTTTGGAACCCGGAGTTGCGAAGTCCTCTGGTTCCAA-CCTTCCCCTTAGGAAACCGAGCGGCAGAGTCCCAACCTGTATCCCTGGCGGCTCTTCAGTGCTCACCTCTGTGAGACGAGCGGTGTCTTCGGAAGTGACGTGGAAGCTATTGTGACAGAGATGCTTTGGGTCAGAAACTTTCCATTAGTATTTGGAAAGAATTGATCTCATTGGAGAAAGGACCATGATATGAACATGTCAG---TTTTTTTGGTTGTAGTA-TTTTTTAAAAAAAC---GTTCTAAGGAGAAGATTTACACGACCACTTTCTTTCCGGACGGATACTTCTTCCTGGATGGAAGGAATAGGAAAAGTATATAAAACAGCTCACA-TGGAATATATTGTTCC-TTGATGAAAAGTGAAACTAAAG-TACCAC----TTGCAGTATGCACTTTTAATTACTGGAGCAAAAGCCGCTACTTGCAATGCTAAACTACTTGCAATGCTAAGTCACATCAACGTCCCGGTCCTGATTGGCCCAGATTTCCTCTTTTATTCTCA------TCTTGCACATACAATGCTGTTAGCATTTATTGCTGTGTTTGAAAACTGCCAAGATAATGACTATGTTAATTAATCTGGCCCAGGATATTTTCACCATAAACAGGAGCGTGACTGAGTAGA--TCCCTCGTTCCTTCCACATCTGTCTCCCGCCTTCCCTAGAGAGAAGTGAATCTAAGTCATGCTGGAAAGATGGTGCCTAAACTGCACCTCAAGGGGGAAAGGGCTAACAGCCCTCC--TCCCATAGCCCTTTCAACACTGTGATCAATCTGACCCTTACATTCAATTTGTCTAGAATTGTATTTCTATTAGGAA--TGCTGCTCTGAGTCTG-------CTGGGCGGAAGACATCC----GATTGGTGGGTTGTCTCTGAACACTGGACCAGCCCAAGGAATATTTCAAGGAAAGTC----------AGGGTGAGATTT---------------GAAGTGTGCACACCTTCACCTAAAGCCAGTCTC-CTGTAATTGACTGTGGGACAGTAAGCATTGCAGAAGAGAGAGCAGTGTCGCTGAGG-CTGGAAAGGTCACCCCTTAAGTCAGGCTTGCAGT------AAAAGCTTAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14088623 1100 - 49578535 GCTCTTGAGGCCAGAGTAGGCCATTTTGAAACCTGAAGTTAAAAGGTCCTCCAGCTCCAG-CCTTTCCCTTACGAAACTGAGTGGCAGAGTGGCAGCCTCTCTCCCTGGTAGTTCTAGGGTGCTCATCTCTGTGAGATGAGAGGTGTCTTTAGAAGTGGCATGGAAGTTATTGTGACAGA--TGCTTTGGGACGGAAACTTTCCATTAGTATTTGGAGAGAATTGATCTCTTTGGAGAAAGGACCCTGGTCTTAACATGTCAG---TGTTTTTTGTGGTAGTA--TTTTTTAAAAA------TTCTAAGGAGAAGATTTACATGATCACTTTCTGTCTGGATGGACGCTTCTTCCTGGGTGGAAGGACTAGGAGAAGTCTGTACAGTGGCTCACA-TGGAAAATACTTCTCCTTTGATGAAAC-TGAGACTGAAGTTACCGC----TTGAGGTATGTACTTTTCATTACCCAGGCAAAAGCCG----------------GCGACTCGCGATGCTCAGTCACGTCGACGTCACAGTCCTGAATTGCCCAGATTTGCTCTTTTTTTCTCA------GCTTGCACATATGCTGCCGCTAGCATTTATCGCCGTGTTTGAAAACTGCCAACATAATGACTGTGTTAATTAATCTGGCCCAGGATATTTTCACCGTAAACAGGAGTGTGGCTGAGTAGG--TCGCTCGTTCCTTCCACAGCTGTCTCCCGCCTTCCCTAGAGACAAGTGGACCTGAGTCGTGCTGGAAAGGTGGTGCCTCAGCTGCACCTTAAGGGGGAAAGGGTTAACAGCCCTCC--TCCCACAGCCCTTTCCGCACTGTGATACGTCTGACCTTTGTATTCAGTTTGCCTAGAATTGTGTTTCTATTAGGAA--TG-TGCGCTGAGTCTA-------TAGGATGGAAGATATCC----AGTCGGTGGGATGTTTCTGAATGCTGGACCAGCCCAAGGAGTTTTTCAAGAAAAGTCTAgtggtggtggggtgggggtggtggtggtggtTGGAGAGGTGTGCTCACCTTCACCTGAGGCCAGTCTC-CTGTGACTGACTCTGGGACAGTAAGCACCGAAGA--AGACAGCAGTGGTCCTGGGG-TTTGGAGGCTCACCCCT-AAGTCAGGCTTGCAGT------AAAAGCTTTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36267902 1017 + 80974532 ATTCTTGAGGCCAGAATAGGCCATTTTGAAACCTTGAGTTAAAAGGTCCTCTGGTCACAT-GGCTCTCCTTCAGAAACTGAGCAGCAGATCTGTTCTCTCTTGACCTGGTGATTCTTTGGTGCCTCCCTCTGTGAGACTGGACAGGTTTTCAGGAGACACCTGGAGACTCTTGTAATTGAGGT------------------------------------------------------------CCATGGTAGGAACACTTCAG---TGTTCT---TTGTGGTA------TAGAAAAACCAATTTCTAA---GAAGATTTACATGATAACTTTCTTTCTGGATTGATACTTTC--------GGAAGGAGTA-GAAAAGTATATAAAGTAACTCAAATTGAAATATATAGTTCCT----TGAAAAATGCAACTAAAGAGACTAT----TAGAATCATGTGCTTCAACTTATTGAGGACAAGATAG----------------GCTATTTTAAATGCCTAGTCACAGAAATTTCACAGTCTCGATTTACCCAGATTTGCTCCTTTGTTCCCCCTCTTTCTTTGCACATATGACTCTGTTAGCATTTGTGGCTGTGTTTGAAAATTGCTATGACACTGACCATGTTAATTAATCGAGTCCAGTGTATTTTGACCATAAGCAGATATGCGAGTGAATAGGAACTCCCCACTCCTTCCACATCCGTCTCTCTCCTTCCCTGGACAGAAGTGAACCTAAGTCATCTTGGAATAATAATA-CTAAAGTATACTTCATGAGGGAAGGGGATACCAGTCCTCCTTTTCCATA---CCTTCTTCACTGAGATCAATCTGGCCTTTATCTCCGGTTTGTTTAGAATCGTATTTCTATTAGGAAATAGATGCTCTGCATCTGTATATTCCAAGAGGGAAGATATCCTTCAAATAGATGGGTTGGTTCTGAACCCCGAGCCTGCC-----------TGCAGAAAAGCC----------ACTGTGAGGTTT---------------GAAGTATGCTCACGTCCCCTGTATGCCTGTCTCTTTGGAGGGGACTCTGGAACACTGAGCGTTGGGAG--AG---GCAGTGGCCCTGGGGCCTGGAAGAGCCACCCTGTAAGTCAGGGTTATAGTCAGCAAGAAAGCTTAT i canFam3.chr7 I 106 I 230 e mm10.chr1 178692416 2044 + 195471971 I a score=71516.000000 s hg38.chr1_KI270759v1_alt 83292 53 + 425601 CCAGAGAAAGAATGTCAT------------------------tctctcaatctgtctctccct----------------------------ctctctctctT------------------GCC s panTro4.chr1 224832186 50 + 228333871 TC---CAAAGAATGTCAT------------------------TCTCTCAGTCTGTCTCTCCCT----------------------------CTCTGTCTCTT------------------GCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226189712 50 - 229942017 TC---CAAAGAATGGCAT------------------------tctctcaatctgtctctctct----------------------------ctctctctctc------------------GCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140078920 45 - 143122389 TC---CAAAGAATGTCA-------------------------tctctcaatctgtctatctct----------------------------ctctctc----------------------ACC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16797847 92 - 229590362 TC---CAAAGAATGTCATTCATtctctctctctctctctttttctctctctttctctctctct----------------------------ctctctctctctctctctctctctctcGGGCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223558296 90 - 227556264 TC---CAAAGAATGTCATTCATtctctctctctctctctctctctctctctttctctctctct----------------------------ctctctctctctctctctctctctct--GGCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16609659 110 - 220367699 TC---CAAAGAAtgtcattcattctctctctc----------tctctctctctctctctctctctctctctctccccccctccctccctctctctctctctctctctctctctctttcgggCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82407473 92 + 85787240 TC---CAAAGAATGTCATTCATtctctctctctctctctctctctctctctctcgttctcttt----------------------------ctctttctctctccctctttctcAACTGGGCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14089723 43 - 49578535 tc----------tgtctg------------------------tctgtctgtctgtctctctct----------------------------ctctctCACCC------------------ACC i calJac3.chr19 C 0 C 0 e mm10.chr1 178692416 2044 + 195471971 I e canFam3.chr7 36268919 230 + 80974532 I a score=210656.000000 s hg38.chr1_KI270759v1_alt 83345 65 + 425601 AGGAAAGTTCCGTTT-TGTTAGCTCTAGTGCTTAATGATTTCAGGGTTCACACTGTGTCCACTCTC s panTro4.chr1 224832236 65 + 228333871 AGGAAAGTTCCGTTT-TGTTAGCTCTAGTGCTTAATGATTTCAGGGTTCACACTGTGTCCACTCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226189762 65 - 229942017 AGGAAAGTTCCGTTT-TGTTAGCTCTAGTGCTTAATGATTTGAGGGTTCACACTGTGTCCACTCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140078965 65 - 143122389 AGGAAAGTTCCGTTT-TGTTAGCTCTAGTGCTTAATGATTTGAGGGTTCACACTGTGTCCACTCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16797939 65 - 229590362 AGGAAAGTTCCTTTT-TGTTAGCTCTAGTGCTTAATGATTTGAGGGTTCACACTGTGTTCACTCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223558386 65 - 227556264 AGGAAAGTTCCTTTT-TGTTAGCTCTAGTGCTTAATGATTTGAGGGTTCACACTGTGTTCACTCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16609769 65 - 220367699 AGGAAAGTTCCTTTT-TGTTAGCTCTAGTGCTTAATGATTTGAGGGTTCACACTGTGTTCACTCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82407565 65 + 85787240 AGGAAAGTTCCTTTT-TGTTAGCTCTAGTGCTTAATGATTTGAGGGTTCATACTGTGTTCACTCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14089766 51 - 49578535 AG---------------GTTAGCTCTAGTGCTTCATGATCTGAGGGTTTGAACTCCGTCCACTCTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36269149 66 + 80974532 AGGGAAGTTCTGTTTCTCTTATATTTAATGCTTAATAATTCAAGCATTCACCCTGTGTCCACTCTC i canFam3.chr7 I 230 C 0 e mm10.chr1 178692416 2044 + 195471971 I a score=47164.000000 s hg38.chr1_KI270759v1_alt 83410 16 + 425601 AAAAAAGCCCAttttc s panTro4.chr1 224832301 16 + 228333871 AAAAAAGCCCAttttc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226189827 12 - 229942017 ----AAGCCCAttttc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140079030 16 - 143122389 AAAAAAGCCCAttttc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16798004 16 - 229590362 AAAAAAGCCCAttttc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223558451 16 - 227556264 AAAAAAGCCCAttttc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16609834 16 - 220367699 AAAaaagcccattttc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82407630 16 + 85787240 AAAAAAGCCCAttttc i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36269215 16 + 80974532 AAAAAAGCTCGTCTTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178692416 2044 + 195471971 I e calJac3.chr19 14089817 0 - 49578535 C a score=521018.000000 s hg38.chr1_KI270759v1_alt 83426 215 + 425601 -ttttttttgagacagagtttcactcttgtcacctgggctggagtgcgatggcatggcctcggctcactgcaacctctacctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcatgcaccatcatgcccggctaattttgtatttttagtagagacagggtttcaccacattggccaggctggtcttgaact s panTro4.chr1 224832317 216 + 228333871 tttttttttgagacagagtttcactcttgtcacctgggctggagtgcaatggcatggcctcggctcactgcaacctctacctcctgggttcaagcaattctcctgcctctgcctcctgagtagctgggattacaggcatgcaccatcatgcctggctaattttgtatttttagtagagacaggggttcaccacattggccaggctggtcttgaact i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226189839 215 - 229942017 -ttttttttgagacagagtttcactcttgtcacccgggctggagtgcaatggcatggcctcggctcactgcaacctctacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcatgcaccatcatgcccggctaattttgtatttttagtagagacggggtttcaccacgttggccaggctggtcttgaact i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140079046 215 - 143122389 -ttttttttgagacagagtttcactcatgtcacctgggctggagtgcaatggcatggcctcggctcactgcaacctctaccttccgggttcaagggattctcctgcctctgcctcctgagtagctgggattacaggcatgcgccatcatgcccggctaattttgtatttttagtagagacagggtttcaccacattggccaggctggtcttgaact i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16798020 215 - 229590362 -ttttttttgagacagagtttcattcttgttgcccgggctggagtgcaatggctcggcctcggctcactgcaacctccacctcctgggtttaagcgattctcctgccttagcctcctgagtagctgcgattacaggcatgtgccaccatgcctggctaattttgtatttttagtagagacagggtttcaccatgttggccagactggtcttgagct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223558467 215 - 227556264 -ttttttttgagacagagtttcattcttgttgcccgggctggagtgcaatggctcggcctcggctcactgcaacctccacctcctgggtttaagcgattctcctgccttagcctcctgagtagctgcgattacaggcatgtgccaccatgcctggctaattttgtatttttagtagagacagggtttcaccatgttggccagactggtcttgagct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16609850 215 - 220367699 -ttttttttgagacagagtttcattcttgttgcccgggctggagtgcaatggctcggcctcggctcactgcaacctccacctcctgggtttaagtgattctcctgcctcagcctcctgagtagctgcgattacaggcatgtgccaccatgcctggctaattttgtatttttagtagacacagggtttcaccatgttggccagactggtcttgagct i papAnu2.chr1 C 0 M 50 s chlSab2.chr25 82407646 215 + 85787240 -ttttttttgagacagagtttcattcttgttgcccgggctggagtgcaatggcacggcctcggctcactacagcctccacctcctgggtttaagcgattctcctgcctcagcctcctgagtagctgcgattacaggcatgcgccatcatgcctggctaattttgtatttttagtagagacagggtttcaccatgttggccagactggtcttgagct i chlSab2.chr25 C 0 C 0 e mm10.chr1 178692416 2044 + 195471971 I e canFam3.chr7 36269231 0 + 80974532 C e calJac3.chr19 14089817 0 - 49578535 C a score=114044.000000 s hg38.chr1_KI270759v1_alt 83641 80 + 425601 cctgacctcaggtgatccgcccacctcggcctcccaaagtgctaggattacaggcgtgagccaccactcctggcc----------------------------AAAA-A s panTro4.chr1 224832533 81 + 228333871 cctgacctcaggtgatccgcccacctcagcctcccaaagtgctaggattacaggcgtgagccaccactcctggcc---------------------------AAAAA-A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226190054 107 - 229942017 cctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccatcactcctggccaaaaaa-aaaaaaaaaaaaaaaaaaaaaaaaa-a i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140079261 78 - 143122389 cctgacctcaggtg--------acctcggcctcccaaagtgctaggattacgggcatgagccaccactcctggcc----------------------AGAAAAAAAA-A i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16798235 92 - 229590362 cctgacctcaggtgatccacccacctcggcctcccaaagtgctaggaatacagtcgtgagccaccgcacctggcTGGCCCa----------------aaaaaaaaaa-a i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223558682 92 - 227556264 cctgacctcaggtgatccacccacctcggcctcccaaagtgctaggaatacagtcgtgagccaccgcacctggcTGGCCCC----------------AAAAAAACAA-A i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82407861 109 + 85787240 cctgacctcaggtgatccacccacctcggcctcccaaagtgctaggaatacaggtgtgagccaccgtgcctggcGGCCCCCCCCCCCCCCGCcaacaacaacaacaaca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178692416 2044 + 195471971 I e canFam3.chr7 36269231 0 + 80974532 C e calJac3.chr19 14089817 0 - 49578535 C e papAnu2.chr1 16610065 50 - 220367699 M a score=25630.000000 s hg38.chr1_KI270759v1_alt 83721 17 + 425601 -AAAAAAGCCCA---TTTTCC s panTro4.chr1 224832614 17 + 228333871 -AAAAAAGCCCA---TTTTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226190161 16 - 229942017 -aaaaaaGCCCA---TTTT-C i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140079339 16 - 143122389 -AAAAAAGCCCA---TTTT-C i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16798327 19 - 229590362 -aaaaaaaaaaaTTTTTTT-C i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223558774 16 - 227556264 -AAAAAAGCCCA---TTTT-C i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82407970 16 + 85787240 -aaaaAAGCCCA---TTTT-C i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14089817 17 - 49578535 AAAAAAACCCCG---TTTT-C i calJac3.chr19 C 0 C 0 e mm10.chr1 178692416 2044 + 195471971 I e canFam3.chr7 36269231 0 + 80974532 C e papAnu2.chr1 16610065 50 - 220367699 M a score=503756.000000 s hg38.chr1_KI270759v1_alt 83738 180 + 425601 ATGTACACACACTCACATGTGCATGCAAGTATACAGTCTTCCTGGCAGAACTGGAATGAGTTAAATTTTGTCCATTTTTATTACTAGAATTGGCTAATAGGGATCCATAGCTTATAATGCATCAACATTAAAAATGAAATTATATTTTGAGGCTCACTGCATATAACCATGTTTACCCTC s panTro4.chr1 224832631 179 + 228333871 ATGTACACACACTCACATGTGCATGCAAGTATACAGTCTTCCTGGCAGAACTGGAATGAGTTAAATTTTGTCCATTTTTATTACTAGAATTGGCTAATAGGGATCCATAGCTTATAATGCATCAACATTAAAAATGAAATTATATTTTGA-GCTCACTGCATATAACCATGTTTACCCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226190177 179 - 229942017 ATGTACACACACTCACATATGCATACAAGTGTACAGTCTTCCTGGCAGAACTGGAATGAGTTAAATTTTGTCCATTTTTATTACTAGAATTGGCTAATAGGGAGCCATAGCTTATAATGCATCAACATTAAAAATGAAATTATATTTTGA-GCTCACTGCATATAACCATGTTTACCCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140079355 179 - 143122389 ACGTACATACACTCACGTGTGCATGCAAGTATACAGTCTTCCTGGCAGAACTGGAATGAGTTAAATTTTGTCCATTTTTATTACTAGAATTGGCTAATAGGGAGCCCTAGTTTATAATGCATCAACATTAAAAATGAAATTATATTTTGA-GCTCACTGCATATAACCATGTTTACCCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16798346 172 - 229590362 ATGTGCACACACTCACATGTGCATG-------ACAGCCTTCCTGGCAGAACTGGAATGAGTTAAATTTTGTCCATTTTTATTACTAGAATTGGCTAATAGGGAGCCATAGCTTATAATGCATCAACATTAAAAATGAAATTATATTTTGA-GCTCACTGCATATAACCATGTTTACCCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223558790 179 - 227556264 ATGTGCACACACTCACATGTGCATGCAAGTATACAGCCTTCCTGGCAGAACTGGAATGAGTTAAATTTTGTCCATTTTTATTACTAGAATTGGCTAATAGGGAGCCATAGCTTATAATGCATCAACATTAAAAATGAAATTATATTTTGA-GCTCACTGCATATAACCATGTTTACCCTC i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82407986 179 + 85787240 ATGTGCACGCCCTCACATGTGCATGCAAGTATACAGCCTTCCTGGCAGAACTGGAATGAGTTAAATGTTGTCCATTTTTATTACTAGAATTGGCTAATAGGGAGCCATAGCTTACAATGCATCAACATTAAAAATGAAATTATATTTTGA-GCTCACTGCATGTAACCATGTTTACCCCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14089834 179 - 49578535 ATGTACACACACTTACATGTCCACACAAGTATACAGCCTTCCAGGCAGAACTGGAATAAGTGAAATTTTATCCATTTTTATTCCCAGAATTGGCTAATAGGGAGCCATAGCTTATAGTGCATCAACATTAAGAATGAAATTATATTTCAA-GCTCACTCCACATAACCATGTTTACCCTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36269231 179 + 80974532 ATGTGCACATGTTTATATGTACATATGGCTATTCAGCTCTTCTGGCAGAACTGGAATAAATAACAATTTATCACTCTTTATTACTAGAATTGGCCAAGAAAGAGCTATAGCTTGTATTACATCAATATTAAAAATGAAATTACATTTCTA-GCTCACTGTACATAACCATGTTTCTCCTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178692416 2044 + 195471971 I e papAnu2.chr1 16610065 50 - 220367699 M a score=337193.000000 s hg38.chr1_KI270759v1_alt 83918 100 + 425601 TGAAAAGA-T-ATTGTCCTCCCTTGAATATTTGACGCAGTAAATTATGTTTTGGAGGAATGCTTAAGTTACCTATGAAGTATCCATTTTTTT---AAATGTTGG--T s panTro4.chr1 224832810 101 + 228333871 TGAAAAGA-TAATTGTCCTCCCTTGAATATTTGACGCAGTAAATTATGTTTTGGAGGAATGCTTAAGTTACCTATGAAGTATCCATTTTTTT---AAATGTTGG--T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226190356 100 - 229942017 TGAAAAGA-T-ACTGTCCTCCCTTGAATATCTGACGCAGTAAATTATGTTTTGGAGGAATGCTTAAGTTACCTATGAAGTACCCATTTTTTT---AAATGTTGG--T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140079534 100 - 143122389 TGAAAAGA-T-ATTGTCCTCCCTTGAATATTTGACGCAGTAAATTATGTTCTGGAGGAATGCTTAAGTTACCTATGAAGTATCCATTTTTTT---AAATGTTGT--T i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16798518 100 - 229590362 TGAAAAGA-T-ATTGTACTCCCTTGAACGTTTGACGCAGTAAATTATGTTTTGGAGGAATGCTTAAGTTACCTATGAAGTATCCATTTTTTT---AAATGTTGG--T i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223558969 100 - 227556264 TGAAAAGA-T-ATTGTACTCCCTTGAACGTTTGACGCAGTAAATTATGTTTTGGAGGAATGCTTAAGTTACCTATGAAGTATCCATTTTTTT---AAATGTTGG--T i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16610115 100 - 220367699 tGAAAAGA-T-ATTGTACTCCCTTGAATGTTTGACGCAGTAAATTATGTTTTGGAGGAATGCTTAAGTTACCTATGAagtatccattttttt---aaatgttgg--t i papAnu2.chr1 M 50 C 0 s chlSab2.chr25 82408165 100 + 85787240 TGAAAAGA-T-ATTGTACTCCCTTGAACGTTTGACACAGTAAATTATGTTTTGGAGGAATGCTTAAGTTACCTATGAAGTATCCATTTTTTT---AAATGTTGG--T i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14090013 101 - 49578535 TGAAAAGA-T-ACCGTGCTCCCGTGAGTCTCTGATGCAGTAAATTATGTTTTGGA-GAATGCTTGAGTTACCTATGAAGTATACATTTTTTT---AAATGTTGGGTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36269410 104 + 80974532 TGAAAGGAGT-ATTCTAGTCTCTTGAGTATTTAAAGCAATAAATTAAGTTTTGGAAGAAGGCTTCAGTTACTTAGAATGTTTAAATTTTTTTTAGAAATATTCA--T i canFam3.chr7 C 0 C 0 e mm10.chr1 178692416 2044 + 195471971 I a score=1503584.000000 s hg38.chr1_KI270759v1_alt 84018 449 + 425601 TTTTTCTATTAGTTTTTAAA--TTAAA-TGGTACATGCGCATAATTT-AAAGATCTAAGTCATTTGATAAGACTTGATATGAGAGACGCCAGCCCAACACTGTGAATGCAGTGAGGCCTTTCCTCCTTTCCCAAGGCTCATT-AATATTCATCTCCCTATTTTAACATTCTTAGGTTGC--------------------------------------------TCCTTCTTGATTTACTTAGTTAAA-GTTTC-CTATTAcagcagttctcaaagtgtgctccacagaccatctgagtccctaagaccctttcactg------ggtttatgagatcgaaactattttcatgtaat----------actccgacg---------------------------------------------------------------------------------------------ctat--------------------ctgcc-ttttttac-ggtgttgacatttgctctaatggcgcaaaggcaatgatggataaaactgctggcttctc------------------agcatgaatcaa-----ggtggtcacgccaagctatgctggtcatgctattactcattgtcatatatttgg s panTro4.chr1 224832911 449 + 228333871 TTTTTCTGTTAGTTTTTCAA--TTAAA-TGGTACATGCGCATAATTT-AAGGATCTAAGTCACTTGATAAGACTTGATATGAAAGACGCCAGCCCAGCACTGTGAATGCAGTGAGGCATTTCCTCCTTTCCCAAGGCTCATT-AATATTCATCTCCCTATTTTAACATTCTTAGGTTAC--------------------------------------------TCCTTCTTGATTTACTTAGTTAAA-GTTTC-CTATTAcagcagttctcaaagtgtgctccacagaccatctgagtccctaagaccctttcactg------ggtttatgagatcgaaactattttcatataat----------actccgacg---------------------------------------------------------------------------------------------ctat--------------------ctgcc-ttttttat-ggtgatgacatttgctctaatggtgcaaaggcaatgatggataaaactgctggcttctc------------------agcatgaatcaa-----ggtggtcacgccaagctatgctggtcatgctattactcattgtcatatatttgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226190456 449 - 229942017 TTTTTCTATTAGTTTTTAAA--TTAAA-TGGTACATGTGCATAATTTAAAAGATCTAAGTCAGTTGATAAGACTTGATATGAAAGACGCCAGCCCAACACTGTGAAGGCAGTGAGGCATTTCCTTCTTTCCCAAGGCTCATT-AATATTCATCTCCCTATTTTAACATTCTTAGATTGC--------------------------------------------TCCTTCTTGATTTACTTAGTTAAA-GTTTC-CTATTAcagcagttctcaaagtgtgctccacagaccatctgagtccctaagaccctttcactg------ggtttatgagatcgaaaccattttcatataat----------actccaacg---------------------------------------------------------------------------------------------ctat--------------------ctgcc--tttttac-ggtgttgacatttgctctaatggtgcaaaggcagtggtggataaaactgctggcttctt------------------agcatgaatcaa-----ggtggtcacgccaagctatgctggtcatgctattactcattgtcatatatttgg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140079634 450 - 143122389 TTTTTCTATTAGTTTTTAAA--TTAAA-TGGTACATGCACATAATTT-AAAGATCTAAGCCATTTGATAAGACTTGACATGAAAGACGCCAGCCCAACGCTGCGAATGCAGTGAGACGTTTCCTCCTTTCCCAAGTCTCATT-CATATTCATCTCCCTGTTTTAACATTCTTAGGTTGC--------------------------------------------TCCTTCTTGATTTACTTAGTTAAAGGTTTC-CTATTAcagcagttctcaaagtgtgctccacagaccatctgagtccctaagaccctttcactg------ggtttacgagatcgaaactgttttcatataat----------tctccgatg---------------------------------------------------------------------------------------------ctat--------------------ctgcc-ttttttac-ggttttgatatttgctctaatggtgcaaaggcaatggtggataaaactgctggcttctt------------------ggcatgaatcaa-----ggtggtcacgccaagctatgctggtcatgctattactcattgtcatatatttgg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16798618 451 - 229590362 TTTTTCTAttcgtttttaaa--ttaaa-tggtacatgcacataattt-aaagagctaagtcatttgataagacttgatatgaaagacgccagcccaacactgcgaatgcagtgaggtgtttcctcctgtcccaaggctcatt-aatattcatctccatattttcacattcttaggttgc--------------------------------------------tgcttcttgatttacttagttataggTTTC-CTAGTAcagcagttctcgaagtgtgctccacagaccatttgagtccctaagaccctttcattg------ggtttatgagatcaaaactattttcgtataat----------actctgatg---------------------------------------------------------------------------------------------ccat--------------------ctgcctttttttac-ggtgttgacatttgctctaatcgtgcaaaggcaatggtggataaaagtgctggcttctt------------------accatgaatcaa-----ggtggtcacaccaagctatgctactcatgctattactcattgtcatatatttgg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223559069 450 - 227556264 TTTTTCTATTCGTTTTTAAA--TTAAA-TGGTACATGCACATAATTT-AAAGAGCTAAGTCATTTGATAAGACTTGATATGAAAGACGCCAGCCCAACACTGCGAATGCAGTGAGGTGTTTCCTCCTGTCCCAAGGCTCATT-AATATTCATCTCCATATTTTCACATTCTTAGGTTGC--------------------------------------------TGCTTCTTGATTTACTTAGTTATAGGTTTC-CTAGTAcagcagttctcgaagtgtgctccacagaccatttgagtccctaagaccctttcattg------ggtttatgagatcaaaactattttcgtataat----------actccgatg---------------------------------------------------------------------------------------------ccgt--------------------ctgcc-ttttttac-ggtgttgacatttgctctaatcgtgcaaaggcaatggtggataaaagtgctggcttctt------------------accatgaatcaa-----ggtggtcacaccaagctatgctactcatgctattactcattgtcatatatttgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16610215 450 - 220367699 tttTTCTATTcgtttttaaa--ttaaa-tggtaCATGCACATAATTT-AAAGAGCTAAGTCATTTGATAAGACTTGATATGAAAGACGCCAGCCCAACACTGCGAATGCAGTGAGGCATTTCCTCCTTTCCCAAGGCTCATT-AATATTCATCTCCATATTTTCACATTCTTAGGTTGC--------------------------------------------TGCTTCTTGATTTACTTAGTTATAGGTTTC-CTAGTACAGCAGTTCTCGAAGTGTGCTCCACAGACCATCTGAGTCCCTAAGACCCTTTCATTG------GGTTTATGAGATCAAAACTATTTTCGTATAAT----------ACTCCGATG---------------------------------------------------------------------------------------------CCGT--------------------CTGCC-TTTTTTAC-GGTGTTGACATTTGCTCTAATCGTGCAAAGGCAATGGTGGATAAAAGTGCTGGCTTCTT------------------ACCATGAATCAA-----GGTGGTCACACCAAGCTATGCTACTCATGCTATTACTCATTGTCATATATTTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82408265 437 + 85787240 TTTTTCTATTCGTTTTTAAA--TTAAA-TGGTACATGCACATAATTT-AAAGAGCTAAGTCATTTGATAAGACTTGATATGAAAGACGCCAGCCCGACACTGCGAACGCAGTGAGGCGTGTCCTCCTGTCCCAAGGCTCATT-AATATTCATCTCCATATT-------------GTTGC--------------------------------------------TGCTTCTTGATTTACTTAGTTATAGGTTTC-CTAGTAcagcagttctcgaagtgtgttccacagaccatctgagtccctaagaccctttcattg------ggtttatgaggtcaaaactattttcgtataat----------actccgatg---------------------------------------------------------------------------------------------ccat--------------------ctgcc-ttttttac-ggtgttgacatttgctctaatcgtgcaaaggcaatggtggataaaagtgctggcgtctt------------------accatgaaccaa-----ggtggtcacaccaagctatgctagtcgtgctattactcattgtcatatatttgG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14090114 492 - 49578535 TTTTTCTATTAGtttttaaa--ttaaa-tggtacatgcacgtaactt-aaagagctgaatcatttgataagacttgatgtgaaaggcaccagcccaacactgcaaatgcggtggggcgtgtcctgctttcccgaggttcatt-aatatttatctccgtattttaacattcttaggttactacttcctgattttctatttttTTTTTAAGGCTAGTCAGGTGAATACTTCTTGATTTTCTTAGTGATGGATTTC-CTATTAcagcagttctcaaagcgtgctccacagaccatttgagtctgtaagaccctttcatcg------ggtttatgagatcaaaactatttttatatact----------actccgatt---------------------------------------------------------------------------------------------ctat--------------------ttgcc--ttttcac-agtgttgctgtttgcttcaatggtgcaaagggaatggtgggt-aaactgctggcttctt------------------cgtgtgaatcaa-----ggttgtcacgccaagcgacgctagtcgtgcgattgctcattgacatatatttgg i calJac3.chr19 C 0 C 0 s mm10.chr1 178694460 531 + 195471971 TTTTCCTATTGGTGTTTAAAATTAAAA-TCATACATGTACATAATTT-AAAGTG--ACATCACTTGAGAAACCTTGAGGTGCAAGACGCC--CCC--CACTGTGAATACAGTG-GGCATCTCCTGCTTTCTCATGATTTCTTAAATATTTATCTCCTCAGCATCATGCTTTTCTGCTGA--------------------------------------------CTCTTCTCGACTTGCTTAGATGTCGATTTC-T----------------------------------------------TAAGACTTTGTCACTA------GGTTTATGATGTCAAAGTTGTTGCCATggacttgggggtgtggctccgaggtagaatgcttgtctagcatatacaaagcctctagttacagccccagtaacacaaaaaTAAACAACAGTGACAACAAAACCCAACACAGCCCCTCTGTTTTCCCAGCGAACCTAGACACtgcc-ctttttgc-tgtgttgacatttgttctgatgctgcagaggaaacagagggtaaacctcctggctttattttattttatatttttaGACCATGAATCAA-----AGCAGT-------AATTATACCAGTCAGGATATTATTTAT---CACACATTTGG i mm10.chr1 I 2044 I 241 s canFam3.chr7 36269514 440 + 80974532 --CTTTTATTAGtttttaaa--tcaaagttacacgtgcatgtaagtt-agggagttaaatcatttgacaagacttgatgtgaaaagcaccattc---taccgagaatacagtg-ggtgttccctgctttc-cagagttcatt-aatatttatctccatatcatgccattcttctgttgc--------------------------------------------tactacttgatttatttagttttagattactctattAcagtaattctccaagtgtactccatggaccatttgcttctccaagaccttttcactgtccacaagtccatgagatcaaaagtacttttatataat----------agtccaaca---------------------------------------------------------------------------------------------ttat--------------------ttgcc-tcttttacttgggttgatatttgct-----------------gtggtgggttaaactgctggcatgtt------------------tgcatgaatcaatcaaggcaagtggcaccagaccctactagtcattgtgttctctgtcatcacacatttgg i canFam3.chr7 C 0 C 0 a score=4095.000000 s hg38.chr1_KI270759v1_alt 84467 1 + 425601 a s panTro4.chr1 224833360 1 + 228333871 a i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226190905 1 - 229942017 a i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140080084 1 - 143122389 a i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16799069 1 - 229590362 a i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223559519 1 - 227556264 a i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16610665 1 - 220367699 A i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82408702 1 + 85787240 A i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14090606 1 - 49578535 a i calJac3.chr19 C 0 C 0 s canFam3.chr7 36269954 1 + 80974532 a i canFam3.chr7 C 0 I 4144 e mm10.chr1 178694991 241 + 195471971 I a score=97257.000000 s hg38.chr1_KI270759v1_alt 84468 38 + 425601 tatttggaggg---tttttttttttttaagaagtacagtgt s panTro4.chr1 224833361 41 + 228333871 tatttggagggttttttttttttttttaagaagtacagtgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226190906 39 - 229942017 tatttggaggg--ttttttttttttttaagaagtacagtgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140080085 36 - 143122389 tatttggaggg-----ttttcttttttaagaagtacagtgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16799070 40 - 229590362 tatttggaggt-gttttttctttttttaagaagtacagtgt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223559520 40 - 227556264 tgtttggaggt-gttttttctttttttaagaagtacagtgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16610666 40 - 220367699 TGTTTggaggt-gttttttctttttttaagaagtacagtgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82408703 40 + 85787240 TGTTTGGAGGT-GTTTTTTCTTTTTTTAAGAAGTACAGTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14090607 40 - 49578535 tatttaaaggt-ttgtttttttttttaaagaagtgcagtgg i calJac3.chr19 C 0 C 0 e mm10.chr1 178694991 241 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I a score=543578.000000 s hg38.chr1_KI270759v1_alt 84506 235 + 425601 tacttgagtttat---------tttatttta-ttttttatttttgagacagagtctcactctgtcgccaggctggagtgcagtggtgcagtctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcatcctcctgagtagctgtgactacaggtgcccgccaccatgcctggctaatttctttgtatttttgtagacacggggtttcaccatgttggccaggatggtct s panTro4.chr1 224833402 235 + 228333871 tacttgaatttat---------tttatttta-ttttttatttttgagacagagtcttactctgtcgccaggctggagtgcagtggtgcagtctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcatccttccgagtagctgtgactacaggtgcctgccaccatgcctggctaatttctttgtatttttgtagacacggggtttcaccatgttggccaggatggtct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226190945 239 - 229942017 tacttgagtttat-----tttatttatttta-ttttttatttttgagacagagtctcactctgtcgccaggctggagtgcagtggtgcagtctcggctcactgcaacctccacctcccaggttcaagtgattctcctgcctcaccctcccaagcagctgtgactacaggtgcccgccaccatgactggctaatttatttgtatttttgtagagacggggtttcaccatgttggccaggatggtct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140080121 244 - 143122389 tacttgagtttattttattttatttatttta-ttttttatttttgagacagagtctcactctgtcgccaggatggagtgcagtggtgtagtctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcaccctcccgagtagctgtgactacaggtgcccaccaccatgcctggctaatttctttgtatttttgtagagacagggtttcaccatgttggccaggatggtct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16799110 232 - 229590362 tacttgagtttattttattttatttatttta-ttttttgtttttgagacagagtctcactctgttgccaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcaccctctcgagtagccgtgactacaggtgc------------ctggctaatttctttgtatttttgtagagacagggtttcaccgtgttggccaggatggtct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223559560 232 - 227556264 tacttgagtttattttattttatttatttta-ttttttgtttttgagacagagtctcactctgttgccaggctggagtgcagtggtgcaatctcagctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcaccctctcgagtagccgtgactacaggtgc------------ctggctaatttctttgtatttttgtagagacagggtttcaccgtgttggccaggatggtct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16610706 233 - 220367699 tacttgagtttattttattttatttattttatttttttgtttttgagacagagtctcactctgttgccaggctggagtgcagtggtgcaatctcagctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcaccctttcGAGTAGCcgtgactacaggtgc------------ctggctaatttctttgtatttttgtagagacagggtttcaccgtgttggccaggatggtct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82408743 232 + 85787240 TACTTGAGTTTATtttattttatctatttta-ttttttatttttgagacagagtctcactctgttgccaggctggagtgcagtggtgcaatctcagctcattacaacctccgcctcctgggttcaagtgattctcctgcctcaccctcccaagtagctatgactacaggtgc------------ctggctaatttctttgtgtttttgtacagacagggtttcaccatgttggccaggatggtct i chlSab2.chr25 C 0 C 0 e mm10.chr1 178694991 241 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14090647 0 - 49578535 C a score=149138.000000 s hg38.chr1_KI270759v1_alt 84741 65 + 425601 cgtgatccactggcctcagcctcccaa--agtgctaggattac-------aggtgtga-gtcactgcgcccagcc s panTro4.chr1 224833637 65 + 228333871 cgtgatccactggcctcggcctcccaa--agtgctaggattac-------aggtgtga-gtcactgcgcccagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226191184 65 - 229942017 cgtgatccactggccttggcctcccaa--agtgctgggattac-------aggtgtga-gtcactgcgcccagcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140080365 65 - 143122389 tgtgatccaccggccttggcctcccaa--agtgctgggattac-------aggtgtga-gtcactgtgcccagtc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16799342 65 - 229590362 cgtgatccacctgccttggcctcccaa--agtgctgggattac-------aggcgcga-gccaccgcgcccagcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223559792 65 - 227556264 cgtgatccacctgccttggcctcccaa--agtgctgggattac-------aggcgcga-gccaccacgcccagcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16610939 65 - 220367699 cgtgatccacctgccttggcctcccaa--agtgctgggattac-------aggcgcga-gccaccgcgcccagcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82408975 65 + 85787240 cgtgatccacctgctttggcctcccaa--agtgctgggattac-------aggcgcga-gccaccgcacccagcc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178695232 64 + 195471971 ctttatccactg-----agccttctcactagcccTAGGATTATCTTTTGAAAGCATAATTCCACTGAAT------ i mm10.chr1 I 241 C 0 e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14090647 0 - 49578535 C a score=493655.000000 s hg38.chr1_KI270759v1_alt 84806 171 + 425601 tacttgagtttatttgatgaggcagt---gaaaataattttattgaatcaaaaaatgtatgttgacatgtgaagtacttgggtggcataggatggtcagt---------tgcat---tagttgcaagctctactagcctttccccctctgccagtagaatacatttttacttgaaggaataacaaa s panTro4.chr1 224833702 171 + 228333871 tacttgagtttatttgatgaggcagt---aaaaataattttattgaatcaaaaaatgtatgttgacatgtgaagtacttgggtggcataggatggtcagt---------tgcat---tagttgcaagctctactagcctttccccctctgccagtagaatacatttttacttgaaggaatatcaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226191249 171 - 229942017 tacttgagtttacttgatgaggcagt---aaaaataattttattgaatcAAGAAATGTATGTTGACATGTAAAGTACTTGGGTGGCATAGGACGGTCAGT---------TGCAT---Tagttacaagctctactagcctttccccctccaccagtagaatatgtttttacttgaaggaataacaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140080430 171 - 143122389 tacttgagtttatttgatgaggtagt---aaaaataattttattgaatcaagaaatatatgttgacacgcaaagtgcttgggtggcataggacggtcagt---------tgcat---tagtcgcaagctctactagcctttccccctccgccagtagaatacatttttacttgaaggaataacaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16799407 170 - 229590362 tacttgagtttatttgatgaggcagt---aaaaataattttattgaatcaagaaacgtctgttgacatgtgaagtacttgggt-gcatgggacagtcagt---------tgcgt---tagttgcaagctctactagcctttccccctccaccagtggaataccttttcacttaaaggaataacaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223559857 170 - 227556264 tacttgagtttatttgatgaggcagt---aaaaataattttattgaatcAAGAAACGTCTGTTGACATGTGAAGTACTTGGGT-GCATGGGACAGTCAGT---------TGCAT---Tagttgcaagctctactagcctttccccctccaccagtggaataccttttcacttaaaggaataacaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16611004 170 - 220367699 tacttgAGTTTATTTGATGAggcagt---aaaaataattttattgaatcaAGAAACGTCTGTTGACATGTGAAGTACTTGGGT-GCATGGGACAGTCAGC---------TGCAT---TTGTTGCAAGCTCTACTAGCCTTTCCCCCTCCACCAGTAGAATACCTTTTCACTTGAAGGAATAACAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82409040 170 + 85787240 TACTTGCGTTTATTTGATGAGGCAGT---AAAAATAATTTTATTGAATCAAGAAACGTCTGTTGACATGTGAAGTACTTGGGT-GCATGGGACAGTCAGC---------TGCAT---Tagttgcaagctctactagcctttccccctccgccagtagaataccttttcacttgaaggaataacaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14090647 166 - 49578535 tacttgagtttatttgatgaggcgga---aaacctaattttattgaatcaagcaatgtatgttcacctgtgaagtactcgcctggctcaggacggtcagt---------agcct---tagctgcgacctctgctagcttttcccca-ccagcagtagaatccatttt-acttgaaggaataac--- i calJac3.chr19 C 0 C 0 s mm10.chr1 178695296 178 + 195471971 ------AATGTCCTCAATGAAAGAATTAAGAACATTAATTTGTCCAATCTAGAAAGACCCATTGACTTGC--AGTATCCAGGCGGCATGGGACGATTGTCTAAAGGGAATGCATACCTACTTGCCATCTTTGCTAGATTCCTTTCCTTTTTTCCTAGAATAAATTTTTGCCTGCAAGAATACCAGA i mm10.chr1 C 0 C 0 e canFam3.chr7 36269955 4144 + 80974532 I a score=285786.000000 s hg38.chr1_KI270759v1_alt 84977 128 + 425601 ccaac---------------------------------------------------------------------------------------------aaactatggttattgagaagtaggtattatgaagacattttctcaaaaggaatgaaagtttgccacttaaaggaaaataactaatggttattttcctttggtttgtttattaatcataaaatt s panTro4.chr1 224833873 128 + 228333871 ccaac---------------------------------------------------------------------------------------------aaaccatggttattgagaagtaggtattatgaagacgttttctcaaaaggaattaaagtttgccacttaaaggaaaataactaatggttatttTCCTTTGGTTTGTTTATTAATCATAAAATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226191420 128 - 229942017 ccaac---------------------------------------------------------------------------------------------aaaccatggttattgagaagtaggtattatgaagacgttttttcaaaaggaatgaaagtttgccacttaaaggaaaataactaatggttatttTCCTTTGGTTTGTTTATTAATCATAAAATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140080601 128 - 143122389 ccaac---------------------------------------------------------------------------------------------aaaccatggttattcagaagtaggtattatgaagacattttctcaaaaggaatgaaactttgccacttaaaggaaaataactaatggttattttcctttggtttgtttattaatcataaaaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16799577 151 - 229590362 ccaac--------------------------------------------------------------aaaccatggttattcagacctaggtatttcgaaaccatggttattcagacctaggtgtttcgaagacattttttcaaaaggaatgcaagcttgccacttaaaggaaaataactaaca--------CAGTTGGTTTGTTTATTAATCATACAACG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223560027 213 - 227556264 ccaacaaaccatggttattcagacctagatatttCGAAACCATGGTTATTCAGACCTAGGTATTTCGAAACCATGGTTATTCAGACCTAGGTATTTCGaaaccatggttattcagacctaggtgtttcgaagacattttttcaaaaggaatgcaagcttgccacttaaaggaaaataactaaca--------CAGTTGGTTTGtttattaatcatacaacg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16611174 120 - 220367699 CCAAT---------------------------------------------------------------------------------------------AAACTATGGTTATTCAGACCTAGGTATTTCgaagacattttttcaaaaagaatgcaAGCTTGCCacttaaaggaaaataactaACA--------CAGTTGGTTTGTTTATTAATCATAAAACG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82409210 120 + 85787240 ccaac---------------------------------------------------------------------------------------------aaaccatggttattcagacctaggtatttcgaagacattttttcaaaaggaatgcaagcttgccacttaaaggaaaataactaaca--------cagttggtttgtttattaatcataaaatg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14090813 111 - 49578535 --------------------------------------------------------------------------------------------------aaaccatggttattcaaacctaggtatcttgaagacattttctcaaaaggaacgaaagcttgccacttaaaggaaaatggccaacg------------cggtttgtttactaatcataaaatt i calJac3.chr19 C 0 C 0 e mm10.chr1 178695474 0 + 195471971 C e canFam3.chr7 36269955 4144 + 80974532 I a score=1247864.000000 s hg38.chr1_KI270759v1_alt 85105 446 + 425601 ttGgcctagcatgatggtacatgcctttagtccaaaccatttgggaggctgaggcaggaggatcact----------caagtctgg--------ggaagttccagaccaacctgggcaatataacaagaccctgtctca-aaaaa-------------------aaaaaaaaa---------------------------------------------------------------------------------------------------aaaaaaaaaaaaaaaac---------------caccataaaattt------tgagctttcaattaaaagat-aaaattttgaaaacttgattctactaccat--gggcttgaaagctttccaatactaaaatatttttctggtaagatttgtggtgatattaacaaatgtgattttttgatactatattatggaatgggtcaacgtctggaagatacagataactcagtaaaccagtattttccaaatgacctttgcattatgttacaaaatcttgcaacataagatccatacaaag----tacaaggt------agcctaattgattttagtacaatgtgatac s panTro4.chr1 224834001 430 + 228333871 TTGGTCTAgcgtgatggtacatgcctttagtccaaaccatttgggaggctgaggcaggaggatcact----------caagtctgg--------ggaagttctagaccaacctgggcaatataacaagaccctgtctca-aaaaa-------------------aaaaaaaaa---------------------------------------------------------------------------------------------------aa-------------------------------aCCataaaattt------tgagctttcaattaaaagat-aaaattttgaaaacttgattctactaccat--gggcttgaaagctttccaatactaaaatatttttctggtaagatttgtggtgatattaacaaatgtgattttttgatactatattatggaatgggtcaacgtctggaagatacagataactcagtaaaccagtattttccaaatgacctttgcattatgttacaaaatcttgcaacataagatccatacaaag----tacaaggt------agcctagttgattttagtacaatgtgaaac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226191548 428 - 229942017 TTGGTCTAgcatgatggtatatgcctttagtccaagccatttgggaggctgaggcaggaggatcact----------caagtctag--------ggaagttccagaccaacctgggcaatatagcaagaccctgtctca-aaaaa-------------------aaaaaaaaa------------------------------------------------------------------------------------------------------------------------------------aCCataaaattt------tgagctttcaattaaaagat-aaaattttgaaaacttgatcctaccaccat--gggcctgaaagctttccaatactaaaatatttttgtggtaagatttgtggtgatattaacaaatgtgattttttgatactatattatggaatgggtcaacgtctggaagatacagataactcagtaaaccaatattttccaaatgacttttgcattatgttacaaaatcttgcaacataaaatccattcaaag----tacaaggt------agcctaattgattttagtacaatgtggtac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140080729 426 - 143122389 ttggcctagcatgatggtacatgcctttagtccaagccatttgggaggctgaggcaggaggatcact----------caagtctag--------ggaagttccagaccaacctgggcaatatagcaagaccctgtctca-aaaaa-------------------aaaaaaa--------------------------------------------------------------------------------------------------------------------------------------cccataaaattt------tgagctttcaattaaaagat-aaaattttgaaaacttgattctaccaccat--gggcctgaaagctttccaatactaaaatatttttctggtaagatttgtggtgatattaactaatgggatttttggatgctatattatggaatgggtcaacgtctggaagatacagataactcggtaaaccaatattttccaaatgacctttgcattatgttacaaaatcttgcaacataagatccattcaaag----cacaaggt------agcctaattgattttagtacaatgtggtac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16799728 422 - 229590362 TTGGCCTAGAATg-tggtacatgcctttagtccaagacatttgggaggctcaggcaggaggatcact----------caagtctag--------ggaaattccagaccaccctgggcaatatagcaagaccctgtctttaaaaaa-------------------aaaaaaa--------------------------------------------------------------------------------------------------------------------------------------agcataaaaTTG-------ATgctttcaattaaaagataaaaattttgaaaacttgattctaccaccat--gtgcctgaaagctttccaatactaaaatactgttctggtaagatttgtggtgatattaacaaatgtgattttttgatactatatt----aatgggtcaacatctggaagatgcagataactcagtaaaccaatattttccaaatgacctttgcattatgttacaaaatcttgcaacataagatccattcaaag----tacaaggt------agccgaattgattttagtacaatgtggtac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223560240 428 - 227556264 ttggcctagaatg-tggtacatgcctttagtccaagacatttgggaggctcaggcaggaggatcact----------caagtctag--------ggaaattccagaccaccctgggcaatatagcaagaccctgtcttt-aaaaa-------------------aaaaaaa--------------------------------------------------------------------------------------------------------------------------------------agcataaaaTTGAAAGCATAagctttcaattaaaagataaaaattttgaaaacttgattctaccaccat--gggcctgaaagctttccaatactaaaatactgttctggtaagatttgtggtgatattaacaaatgtgattttttgatactatatt----aatgggtcaacatctggaagatgcagataactcagtaaaccaatattttccaaatgacctttgcattatgttacaaaatcttgcaacataagattcattcaaag----tacaaggt------agccgaattgattttagtacaatgtggtac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16611294 426 - 220367699 TTGGCCTAGAATG-TGGTACATGCCTTTAGTCCAAGAcatttgggaggctcaggcaggaggatcact----------caagtcTAG--------GGAAattccagaccaccctgggcaatatagcaagaccctgtcttt---aaa-------------------aaaaaaa--------------------------------------------------------------------------------------------------------------------------------------agcataaaattgaaagcataagctttcaattaaaagataaaaattttgaaaacttgaTTCTACCACCAT--GGGCCTGAAAGCTTTCCAATACTAAAATACTGTTCTGGTAAGATTTGTGgtgatattaacaaatgtgattttttgaTACTATATT----AATGGGTCAACATCTGGAAGATGCAAATAACTCAGtaaaccaatattttccaaatgaccttTGCATTATATTACAAAATCTTGCAACATAAGATCCATTCAAAG----TACAAGGT------AGCCTAATTGATTTTAGTACAATGTGGTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82409330 425 + 85787240 ttggcctagcatgatattacatgcctttagtccaaaccatttgggaggctcaggcaggaggatcact----------caagtctag--------ggaaattccagaccaccctgggcaatatagcaagaccctgtcttt---aaa-------------------aaaaaaa--------------------------------------------------------------------------------------------------------------------------------------agcataaaaTTGaaagtataagctttcaattaaa--ataaaaattttgaaaacttgattctaccaccat--gggcctgaaagctttccaatactaaaatactgttttggtaagatttgtggtgatattaacaaatgtgattttttgatactatatt----aatgggtcaacatctggaagatgcagataactcagtaaaccaatattttccaagtgacctttgcattttgttacaaaatcttgcaacataaaatccattcaaag----tacaaggt------agccgaattgattttagtacaatgtggtac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14090924 389 - 49578535 tggagctggcatggtggtacatgcctttagtccaagccatctgggaggctgaggcaggaggatcact----------caagtctag--------ggaagttccagaccaacctgggcaatatagcaagaccctgtctca----------------------------aaaa--------------------------------------------------------------------------------------------------------------------------------------aacat----------------------------------aaaattttgaaaacttcattttaccaccat--ggacctgaaagctttccaatactaaaatacttttctggtcagatttgtggtgacattaacaaatgtgattttttgatactatataatggaatatgtcaacatctggaaggtactg-taactcagtaaacggatattttccgaatgacctttgtattacgttacaaaatcttgcaacataagatccattc-aag----tacaaggt------agactaatggattttagtacaatgtggtag i calJac3.chr19 C 0 C 0 s mm10.chr1 178695474 606 + 195471971 TAGgccgggtgtggtggcacgtgcctttaatcccag-cactccggaggcagaggcaggcagatttctgactttgaggccagcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcg-aaaaaccaaCCCACCCACCCCCCCAAAaaagaatatcagacagacaaattttaattgctcaaaactagagattttgaagagggtttcttaaacgggatgaaaggggtttctcaaatgtcctttggaacatttaaaggaaagcaaggaacacgctttggtttgttaatcataaaatga-------gaaccttcagttgaaagat-tgaaatttagaaactcgattccaccaccacaagagcccagacacttctcaaccttaaaagctttctctgtgacgattcatggtgatagcaacagatgtgacttattgatgctacatattgtaatgtgccaatctctggaagctgtttataactcaacaagtcactgttgtgcaggcaatccatgtgttagattac-agatcttgtaacctaagatccatttgaagggaacataagatcctttgaaatctacaagttttagtacactggagtac i mm10.chr1 C 0 I 926 e canFam3.chr7 36269955 4144 + 80974532 I a score=2018896.000000 s hg38.chr1_KI270759v1_alt 85551 718 + 425601 caaaagtttattaatatatttaatagtttcagattgctcatttcagtgaaattttaagaaactaccacttgttgatttttagtgtagtttctaagaacagtgtacacagttatctgaatactcctattcaaatactcctccatattccaactacttgtctttatgaggctgggttttctttagatatctcaacggaaaccacatatccagacataagccacataaccaaaataatataagcaactcattaaagagatttgtgggctggggatggtggctcacacctgtaatcccagcactttggcaggccaatttgggaggatcacttggggccaggggttcacggtcatgccttccaagatcatgccacggcactccagcctgagtgacaaagtaagaccctgactc---aaaaaaaaaaaaaaaaaagagagagatttgtgaaaatgtaaaacagcaatgccacttttcttactaattttttgtttagaaaataattacatttcatacaa------tatttatgccaacatgtgatgggtttattattttaaaataaataaatgcatctatattttaaagttttcatttaatttctagtatggtgactatcaataggtataTAGTGTATTTACGGTTGCTCTTATGCCagagc-aaccagtccagactggagcagatcaggagaccctgggaaagaactcttcagaaag-----------atggaatgattcttata s panTro4.chr1 224834431 718 + 228333871 caaaagcttattaatatatttaatagtttcagattgctcatttcagtgaaattttaagaaactaccacttgttgatttttagtgtactttctaagaacagtgtgcacagttatctgaatactcctattcaaatactcctccatattccaactacttgtctttatgaggctgggttttctttagatatctcaacggaaaccacatatccagacataagccacataaccaaaataatataagcaactcattaaagagatttgtgggctggggatggtggctcacacctgtaatcccagcactttggcaggccaatttgggaggatcacttggggccaggggttcatggtcgtgccttccaagatcatgccacggcactccagcctgagtgacaaagtaagaccctgactc---aaaaaaaaaaaaaaaaaagagagagatttgtgaaagtgtaaaacagcaatgccacttttcttactaattttttgtttagaaaataattacatttcatacaa------tatttatgccaacatgtgatgggtttattattttaaaataaatacatgcatctatattttaaagttttcatttaatttctagtatggtgactatcaataggtataTAGTGTATTTATGGTTGCTCTTATGGCagggc-aaccagtccagactggagcagatcaggagaccctgggaaagaactcttcagaaag-----------atggaatgattcttata i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226191976 719 - 229942017 taaaagtttattaatatatttaatagtttcagattgctcatttcagtgaaattttaagaaactaccactggttaatttttagtgtagtttctaagaacagtgtgcacagttctctgaatactcctattcaaatactcctccatattccaactacttgtctttatgaggctgggttttctttatatatctcaatggaaaccacatatccatacataagccacataaccaaaataatataagcaactcattaaagagatttgtgggctgggtatggtggctcacacctgtaatcccagcactttggccggccaatttgggaggatcacttggggccaggggttcacggtcatgccttccaagatcatgccacggcactccagcctgagtgacaaagtaagaccctgactc------taaaaaacaaaaagagagagagatttgtgaaaatgtaaaacagcaatgccacttttcttactaattttttgtttagaaaataattacatttcataaaatatg-ttatttatgccaacatgtgatgggtttattattttaaaataaataaatgcatctatattttagag-tttcatttaatttctagtatggtgactatcaataggtataTAGTGTATTTATGGTTGCTCTTATGACagagc-aaccagtccagactggagcagatcaggagaccctgggaaagaactcttcagaaag-----------atgtaatgattattgta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140081155 725 - 143122389 taaaagtttattaacatatttaatagtttcagattgctcatttca-tgaaattttaagaaactaccacttgttgatttttagtgtagtttctaagaacagtgtgcacagttatctgaatactcctattcaaatactcctccatattccaactgcttgtctttatgaggctgggttctctttagatatctcaatggaaaccacatatccagacataagccacacaacccaaataatataagcaactcattaaagagatttgtgggctggggatggtggctcacacctgtaatcccagcactttggcaggccagtttgggaggatcacttggggccaggggttcacagtcatgccttccaagatcatgccacggcactccagcctgagtgacaaagcaagaccctgactctaaaaaaaaaaaaaaaaaaaaaagagagatttgtgaaaatgtaaaacagcaatgccacttttcttactaagtttttgtttagaaaataattatatttcataaagtatg-ttatttatgccaacatgtgataggtttattattttaaaataaataaatgcatctatattttaaagttttcatttaatttctagtatagtgactatcaataggtatTTAGTGTATTTATGGTTGCTCTTATGACagagc-aaccagtccagactggagcagatcaggagaccctgggaaagaactcgtcagaaag-----------atgtaatgattattata i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16800150 726 - 229590362 taaaagtttattgatatatttaatagtttcagattgctcatttcagtgaaattttaagaaactaccactttttgatttttagtgtagtttctaagaacagtatccacaggtatctgaatactcctattcaaatactcttccatattccaactacttgtctttatgaggctgggttttctttatatatgtcaatggaaaccacatatccagacataaaccacgtaaccaaaataatataagcaattcattaaagagatctgtgggctgggtatggtagcttacacctgtaatcccagcactttgggaggccaatttgggaggatcacttggggccaggggttcaccgtcatgccttccaaaatcatgccactgcactccagcctgagtgacaaagtaagaagctgactctaaaaacaaaaaagagagagagagagagatttgtgaaaatgtaaaacagcaatgccacttttcttactaattttttgtttagaaaataattacatttcataaaatatg-ttatgcatgccaacatgtgatgggtttattattttaaaataaataaatgtgtctatattttaaagttttcatttaatttctagtatggtgaatatcagtaggtataGAGTGTATTTATGGTTGCTCTTATGACagagtaaattagtccag-ctgcagcagatcaggagaccctgggaaagaactcttcagaaag-----------atgtaatgattattata i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223560668 726 - 227556264 taaaagtttattgatatatttaatagtttcagattgctcatttcagtgaaattttaagaaactaccactttttgatttttagtgtagtttctaagaacagtgtccacaggtatctgaatactcctattcaaatactcttccatattccaactacttgtctttatgaggctgggttttctttatatatgtcaatggaaaccacatatccagacataaaccacgtaaccaaaataatataagcaattcattaaagagatctgtgggctgggtatggtagcttacacctgtaatcccagcactttgggaggctaatttgggaggatcacttggggccaggggttcaccgtcatgccttccaaaatcatgccactgcactccagcctgagtgacaaagtaagaagctgactctaaaaacaaaaaagagaaagagagagagatttgtgaaaatgtaaaacagcaatgccacttttcttactaattttttgtttagaaaataattacatttcataaaatatg-ttatgcatgccaacatgtgatgggtttattattttaaaataaataaatgtgtctatattttaaagttttcatttaatttctagtatggtgaatatcagtaggtataGAGTGTATTTATGGTTGCTCTTATGACagagtaaattagtccag-ctgcagcagatcaggagaccctgggaaagaactcttcagaaag-----------atgtaatgattattata i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16611720 724 - 220367699 TAAAAGtttattgatatatttaataGTTTCAGATTGCTCATTTCAGTGaaattttaagaaactaccactttttgatttttagtgtAGTTTCTAAGAACAGTGCCCACAGGTATCTGAATACTCCTATTCAAATACTCTTCCATATTCCAACTACTTGTCTTTATGAGGCTgggttttctttatatatgtcaATGGAAACCACATATCCAGACATAAACCATGTAACCAAAATAATATAAGCAATTCATTAAAGAGATCTgtgggctgggtatggtagcttacacctgtaatcccagcactttgggaggccaatttgggaggatcacttggggccaggggTTCACCGTCATGCCttccaaaatcatgccactgcactccagcctgagtgacaaagtaagAAGCtgactctaaaaacaaaaaagag--agagagagagatttgtgaaaatgtaaaacagcAATGCCacttttcttactaattttttgtttagaaaataattacatttcataaaatatg-ttaTGCATGCCAACATGTGAtgggtttattattttaaaataaataaatgtgtctatattttaaagttttcatttaatttctagTATGGTGAATATCAGTAGGTATAGAGTGTATTTATGGTTGCTCTTATGACAGAGTAAATTAGTCCAG-CTGCAGCAGATCAGGAGACCCTGGGAAAGAACTCTTCAGAAAG-----------ATGTAATGATTATTATA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82409755 700 + 85787240 taaaagtttattgatatatttaatagtttcagattgctcatttcagtgaaattttaagaaactaccacttgttgatttttagtgtagtttctaagaacagcgtccacagatgtctgaatactcctattcaaatactcttccatattccaactacttgtctttatgaggctgggttttctttatatacgtcaatggaaaccacatatccagacataaaccatgtaaccaaaataatataagcaactcattaaagagatctatgGgctgggtatggtggctcacacctgtaatcccagcactttgggaggcccatttgggaggatcacttggggccaggggttcacggtcatgccttccaagaccatgccactgcactccagcctgagtgacaaagtaagaccctgactctaaaaacaaaaaag----agagagagagatttgtgaaaatgtaaaatagcagtgccatttttcttactaattttttgtttagaaaataattacatttcataaaatatg-ttatgcatgccagcatgtgatgggtttattattttaaaataaataaatgcgtctatattttcaagttttcatttaatttctagtatggtgaatatcagtaggtataGAGTATATTTATGGTTGCTCTTA-----------------------TGCAGCAGATCAGGAGACCCTGGGAAAGAACTCTTCAGAAAG-----------ATGTAATGATTATTATA i chlSab2.chr25 C 0 I 39 s calJac3.chr19 14091313 702 - 49578535 taaaagtttattaatatatttaatagtttcaggttactcgtttcagcgaaattttaagaaactaccacgtgttgactttcagtgtagtttctgaggacagtgtccacggttacctgaa-aaggctattaaaatacac-tccatattccaactgcatgtctctatgaggctgggttttcttcatagatttcaatggaaaccacatatcCAGACATAAGCCACACAACCAAAACAATATAAGCAGCTCATTAAAGAGATCTGTGGgctgggtatggtggctcagacctgtaatcccagcac-------------ttcgggaggatcgctt--cccgaggggtttgaggtcatgccttacaagatcatgccactgcaatccagcttgagccacaaagtgagactctgtctctgaaaaaaagacatagaaaa-----------tgtgaaaatataaaacaaaaatgctacatttcttactaattt----tttaaaaaataattacatttcataaaatatgtttttttatgccaacatatgatgggtttattattctaaaataaataaatgcatacatattttaaagttgtcatgtaatgtctggtatggtgaatatcagtaggtgtaTATTTTACTTACGCTCGATCTTATGACagagc-aaccagtccagactggagtagatcaggagaccctgggaaagatttcttcagaaagatgtcccgattatgtaatgatttt---- i calJac3.chr19 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I a score=211365.000000 s hg38.chr1_KI270759v1_alt 86269 96 + 425601 actcctatgctggaacatttcgagagcagagttacagaacaagaaggagagttttggatggaattcccaataaatacatagaaaacaaagcaaatt s panTro4.chr1 224835149 96 + 228333871 actcctatgctggaacatttcgagagcagagttacagaacaagaaggagagttttggatggaattcccaataaatacatagaaaacaaagcaaatt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226192695 96 - 229942017 actcctatgttggaacattttgagagcagagttacagaacaagaaggagagttttggatggaattcccagtaaatacatagaaaacaaagcaaatt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140081880 96 - 143122389 actcctatgttggaacattttgagagcagagttacagaacaagaaggagagttttggatggaattcctaataaatatatagaaaacaaagcaaatt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16800876 93 - 229590362 actcctgggttgcaacattttgagggcagagttacagaac---aaggagagttttggatggaattcctaataaatacatagaaaacaaagcaaatt i rheMac3.chr1 C 0 I 4 s macFas5.chr1 223561394 93 - 227556264 actcctaggttgcaacattttgagggcagagttacagaac---aaggagagttttggatggaattcctaataaatacatagaaaacaaagcaaatt i macFas5.chr1 C 0 I 5 s papAnu2.chr1 16612444 93 - 220367699 ACTCCTAGGTTGCAACATTTTGAGGGCAGAGTTACAGAAC---ACGGAGAGTTTTGGATGGAATTCCTAATAAATACgtagaaaacaaagcaaatt i papAnu2.chr1 C 0 I 10 s calJac3.chr19 14092015 95 - 49578535 -ccacgatgctggaacattttgagagcagagttacagaacgaggaggagggttttggactgaattcctaataaatacatagaaaactaagcaaatt i calJac3.chr19 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e chlSab2.chr25 82410455 39 + 85787240 I a score=1428706.000000 s hg38.chr1_KI270759v1_alt 86365 508 + 425601 gaaaaAAAAAAA------AAGATAAAAAAATTGAACCATGAAGGaagagctctctggggctctccgtaatgtttaagattatgaagagctcctgaaacgaaagagtttgagaatcaccgGCCTTCGGCGTAattacgaaacatgaaggggtagttctct----------------ttcgccaccacccaccccaatcctacgccacagaaatattcacttcttgtcttcccattgccctaacaatttgttatgatttgggttggatcaatattctatattatgatttatgtaaaggttatATAAAAATATTACTCTGAGTACATAGAGGCTGTTTGCAGCTGAGCTGTGTAATGTGGCTTTTCATTTAAATgtacaaaagggatacattttttgataccttggatctgaaatatctctctaatttgccttaacacttgatggttggtttttggcttgatattagagttctaggttagatgtcattttcctcagaattgtgaaggcatttctctatggtcttagagcttct s panTro4.chr1 224835245 514 + 228333871 gaaaaAAAAAAAAAAAACAAGATAAAAAAATTGAACCATGAAGGaagagctctttggggctctccgtaatgtttaagattatgaagagctcctgaaacgaaagagtttgagaatcaccgGCCTTCGGCGTAattacgaaacatgaaggggtagttctct----------------ttcgccaccacccaccccaatcctacgccacagaaatattcacttcttgtcttcccattgccctaacaatttgttatgatttgggttggatcaatattctatattatgatttatgtaaaggttatATAAAAATATTACTCTGAGTACATAGAGGCTGTTTGCAGCTGAGCTGTGTAATGTGGCTTTTCATTTAAATgtacaaaagggatacatgttttgataccttggatctgaaatatctctctaatttgccttaacacttgatggttggtttttggcttgatattagagttctaggttagatgtcattttcctcagaattgtgaaggcatctctctatggtcttagagcttct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226192791 509 - 229942017 gaaaaAAAAAAA--AAGCAAGATAAAAACATTGAACAATGAAGGaaaagctttttggggctctcagtaatttttaagattatgaagaggtcctgaaatgaaagagtttg---atcaccgGCCTTTGGTGTAattacgaaacatgaaggtttagttctct----------------tttgccactacccaccccaatcctacaccgcagaaatgttcacttcttgtcttcccattgccctaacaatttgttatgatttgggttggatcaatattctatattatgatttatgtaaaggttatATAAAAATATTACTCTGAGTACATAGAGGCTGTTTGCAGCTGAGCTATGTAATGCGGCTTTTCATTTAAATgtacaaaagggatacattttttgataccttggatctgaaatctctctctaatttgccttaacacttgattgctggtttttggctcggtattagagttccaggttagatgtcattttcctcagaattgtgaaggcatttctatatggtcttagagcttct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140081976 510 - 143122389 gaaaaAAAAAAA----CCAAGATAAAAACATTGAACAATAATGGaaaagctctttggggctcttggtaatttttaagattatgaagaggtcctgaaacgaaagagtttgagaatcactgGCCTTCTGTGTAattacgaaacgtgaaggtttagttctct----------------ttcaccaccacccaccccaatcctacgccacaggaatgttcacttcttgtcttcccattgccctaacaatttgttatgatttgggttggatcaatattctatattatgatttatgtaaaggttatATAAAAATATTACTCTGAGTACATAGAGGCTGTTTGCAGCTGAGCTATGTAATGTGGCTTTTCATTTAAATgtacaaaagggatacattttttgataccttggatctgaaatatctctctaatttaccttaccactcgattgctggtttttggctcagtattagagttctaggttagatgtcattttcctcagaattgtgaaggcatttctctatggtcttagagcttct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16800973 504 - 229590362 --aaaaaaaaaa----acaagagaaaaacattgaacaataaaggaaaagctctttggggctcttggtaatttttaagattatggagaggtcctgaaac----gagtttgaaaatcaccgGCTTTCTGTGTAattatgaaacgtgaaggtttaattctct----------------ttcaccaccacccaccccaatcctatgccacagaaatgttcacttcttgtcttcccattgccctcacaatttgtcatgatttgggttggatcaatattctatattatgatttatgtaaaggttaCATAAAAGTATTACTCTGAATACATAGAGACTGTTTGCAGCTGAGCTATGTAAGGTGGCTTTTCATTTAAATgtacataagggatacattttttgataccttggatctgaaatatctctctaatttgccttaacactggattgctggttttcggcttggtattagagttctaggttagatgtcattttcctcagaattgcgaaggcatttctctttggccttagggcttct i rheMac3.chr1 I 4 C 0 s macFas5.chr1 223561492 504 - 227556264 --aAAAAAAAAA----ACAAGAGAAAAACATTGAACAATAAAGGaaaagctctttggggctcttggtaatttttaagattatgaagaggtcctgaaac----gagtttgagaatcaccgGCCTTCTGTGTAattatgaaacgtgaaggtttaattctct----------------ttcaccaccacccaccccaatcctatgccacagaaatgttcacttcttgtcttcccattgccctcacaatttgtcatgatttgggttggatcaatattctatgttatgatttatgtaaaggttacataaaagtattactctgaatacatagagactgtttgcagctgagctatgtaaggtggctttttgtttaaatgtacataagggatacattttttgataccttggatctgaaatatctctctaatttgccttaacactggattgctggttttcggcttggtattagagttctaggttagatgtcattttcctcagaattgtgaaggcatttctctttggccttagagcttct i macFas5.chr1 I 5 C 0 s papAnu2.chr1 16612547 504 - 220367699 --aaaaaaaaaa----acaagagaaaaacattgaACAATAAAGGAAAAGCTCTTTGGGGCTCTTGGTAATTTTTAAGATTATGAAGAGGTCCTGAAAC----GAGTTTGAAAATCACCGGCCTTCTGTGTAATTATGAAACGTGAAGGTTTAATTCTCT----------------TTCACCACCACCCACCCCAATCCTATGCCACAGAAATGTTCACTTCTTGTCTTTCCATTGCCCTCACAATTTGTCATGATTTGGGTTGGATCAATATTCTATATTATGATTTATGTAAAGGTTATATAAAAGTATTACTCTGAATACATAGAGGCTGTTTGCAGCTGAGCTATGTAAGGTGGCTTTTCATTTAAATGTACATAAGGGATACATTTTTTGATACCttagatctgaaatatctctctAATTTGCCTTAACACTTGATTGCTGATTTTCGGCTTGGTATTAGAGTTCTAGGTTAGATGTCATTTTCCTCAGAATTGCGAAGGCATTTCTCTTTGGCCTTAGAGCTTCT i papAnu2.chr1 I 10 C 0 s chlSab2.chr25 82410494 504 + 85787240 --caacaaAAAA----CCAAGACAAAAACATTGAACGATAAAGGGaaagctctttggggctctcggtaatttttaagattatcaagaggtcctgaaat----gagtttgagaatcactgGCCTTCTGTGTAattatgaaacatgaaggtttaattctct----------------ttcaccaccacccaccccaatcctatgccacagaaatgttcacttcttgtcttcccattgccctcacaatttatcatgatttgagttggatcaatattctatattatgatttatgtaaaggttatATAAAAGTATTACTCTGAATACATAGAAGCTGTTTGCAGCTGAGCTATGTAAGGTGGCTTTTCATTTAAATgtacataagggatacattttttgataccttggatctgaaatatctctctaatttgccttaacacttgattgctggtttttggcttggtattagagttctaggttagatgtcattttcctcagaattgcgaaggcatttctctttggccttagagcttct i chlSab2.chr25 I 39 C 0 s calJac3.chr19 14092110 512 - 49578535 ------ggaaaa----acaagataaAAATATTGAGCAATACAGGaaaagctctctggggctctcgataatttttaagattgtgaa-aggtcctgaaatga--gagtttgagaatcgcCAGCCTTCTGTGCAAGCAT----TATGAAGATTGAGTTCTTTAAATGTGAACTTTAGATCCGCCACCAGCCACCCGGATCCTACGCCCTGTGAATATTCACTTCTTGTCTTCCCAGTGCCCCGACAATTTGTTGTGATTCTGGTTGGATCAGTATTCTATGTGATGATTTATGGAAAGCTTATCT-AAAGTATTACTCTGACTGCATAGAGGCTGTTTGCAGCTGAGCTATGTAATGTGGCTTTTCATTCAAAtatatgaaagggataccttttttgttatcatggatctgaaatttctctctaatctgccttaacacttgattcatggtttttggctaggcattagcggtccaggttagatgccatcttcctcagcaccgtgaaggcatttctctatggtcttagagcttct i calJac3.chr19 C 0 I 2697 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I a score=891787.000000 s hg38.chr1_KI270759v1_alt 86873 367 + 425601 gatgttgctgttgaaaagtctgaatctggatcatttatgtaacacatctccctctcccttcccctttccctgcccgttcctctcctgaagcctgtctctttagtgttgagaaatgtcacagggatgtcttttggcgtggagctaatggcatcctttgtgctggcacttggcagtcctttcggtgtacaaattcatgttggcctgttctatgaaatattctttaattattttttaacactgtttttcctttcattttcttttttattgtttttgtaactcctattatttggtgttattgtctagtttaaaaattttggggggctgggtgcggtagctcatgcttgtaatcccagcacattgggaggtc s panTro4.chr1 224835759 365 + 228333871 gatgttgctgttgaaaagtctgaatctggatcatttatgtaacacatctccctctcccttcccctttccctgcccgttcctctcctgaagcctgtctctttagtgttgagaaatgtcacagggatgtcttttggcgtggagctaatggcatcctttgtgctggcacttggcagtcctttcggtgtacaaattcatgttggcctgttctatgaaatattctttaattattttttaacac--tttttcctttcattatcttttttactgtttttgtaactcctattatttggtgttattgtctagtttaaaaattttggggggctgggtgcggtagctcatgcttgtaatcccagcactttgggaggtc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226193300 367 - 229942017 gatgttgctgttgaaaagtctgaatctggatcatttatgtaaaacatctccctctcccttccccattccctgccccttcctctcctgaagcctgtctctttagtgttgagaaatgtcacagggatgtcttttggcgtggagctaatggcatcctttgtgctggcacttggcagtcctttcggtctacaaattcatgttggcctgttctaggaaatattctttaattattttttaacagtgtttttccttgcattttcttttttattccttttgtaactcctattatttggtcttattgtctagtttaaaaatttttgggggctgggtgcggtagctcatgcttgtaatcccagcactttgggaggtc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140082486 367 - 143122389 gatgttgctgttgaaaagtctgaatctggatcatttatgtaaaacatctccctctcccttcccctttccctgcccctgcctctcctgaagcctgtctctttagtgttgagaaatgtcacaggcatgtcttttggcatggagttaatggcatccttcgtgctggcacctggcagtcctttcggtctactaattcatgttggcctgttctaggaaatattctttaattattttttaacagtgtttttccttgcattttcttttttattctttttgtaactcctgttatttggtcttattgtctagtttaaaaattttggggggctgggtgtggtagctcatgcttgtaatcccagcactttgggaggtc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16801477 367 - 229590362 ggtgttgctgttgaaaagtctaaatctggatcatttatgtaaaacatctccgtctcccttcccctttccctgccccttcctctcctgaagcctgtctctttggtgttgagaaatttcacagggatgtcttttggcgtggagctaatggcatcctttgtgctggcacttggcagtcctttcggtctacaaattcatgttggcctgttctaggaaatattctttaattattttttggcagtgtttttccttgcattttcttttttactctttttgtaactcctattatttggTCTTATTGTCTAATTTAAAAATTTTGGAGGgccgggtgcagtagctcacgcctgcaatcccagcactttgggaggtc i rheMac3.chr1 C 0 I 1784 s macFas5.chr1 223561996 367 - 227556264 ggtgttgctgttgacaagtctaaatctggatcatttatgtaaaacatctccatctcccttcccctttccctgccccttcctctcctgaagcctgtctctttggtgttgagaaatttcacagggatgtcttttggcgtggagctaatggcatcctttgtgctggcacttggcagtcctttcggtctacaaattcatgttggcctgttctaggaaatattctttaattattttttggcagtgtttttccttgcattttcttttttactctttttgtaactcctattatttggTCTTATTGTCTAATTTAAAAATTTTAGAGggccgggtgcagtagctcacgcctgcaatcccagcactttgggaggtc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16613051 367 - 220367699 GGTGTTGCTGTTGAAAAGTCTAAATCTGGATCATTTATGTAAAACATCTCCgtctcccttcccctttccctgccccttcctctcctGAAGCCTGTCTCTTTGGTGTTGAGAAATTTCACAGGGATGTCTTTTGGCATGGAGCTAATGGCATCCTTTGTGCTGGCACTTGGCAGTCCTTTCGGTCTACAAATTCATGTTGGCCTGTTCTAGGAaatattctttaattattttttggcagtgtttttccttgcattttcttttttactctttttgtaaCTCCTATTATTTGGTCTTAttgtctaatttaaaaattttggagggccgggtgcagtagctcacgcctgcaatcccagcactttgggaggtc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82410998 367 + 85787240 ggtgttgctgttgaaaagtctaaatctggatcatttatgtaaaacatctccctctcccttccccttttcctgccccttcctctcctgaagcctgtctctttggtgttgagaaatttcacaaggatgtcttttggcatggagctaatagcatcctttgtgctggcacttggcagtcctttcggtctacaaattcatgttggcctgttctaggaaatattctttaattattttttgacagtgtttttccttgcattttcttttttactctttttgtaactcctattgtttggtcttattgtctaatttaaaaattttggagggccgggtgcagtagctcacgcctgtaatcccagcactttgggaggtc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14092622 2697 - 49578535 I a score=392952.000000 s hg38.chr1_KI270759v1_alt 87240 237 + 425601 atagtgggtggatcacctgaggtcaggagttcgggaccagcctggccaacatagtgaaaccccgcctctactaaagatacaaaaattagctgggcgtgatggcagatgcctgt-aatcctagctactcgggaggctgaggcaggagaatctcttaaacccaggaggcagaggctgcagtgagccaagatcccgccactgcactccagcctgggcaacagagtgaaactctgtcttaa-----a s panTro4.chr1 224836124 236 + 228333871 atagtgggtggatcacctgaggtcaggagttcgggaccagcctggccaacatagtgaaaccccgcctctactaaaaatacaaaaattagccgggcgtgatggcagacgcctgt-aatcccagctactcgggaggctgaggcaggagaatctcttaaacccaggaggcagaggctgccgtgagccaagatcacgccactgcgctccagcctgggcaacagagtgaaactctgtcttaa------ i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226193667 241 - 229942017 atagtgggtagatcacctgatgtcaggagttcgggaccagcctggccaacatactgaaaccctgtctctactaaaaatacaaaagttagccgggtgtggtggtgcatgcctgt-aatcccagctg-ttgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggctgcagtgagccaagttcacgccactgcactccagcctgggcaacagagtgaaactctgtctcaaaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140082853 236 - 143122389 atagtgggtggatcacccgaggtcgggagttcgggaccagcctgtccaacatagtgaaaccccgtctctactaaaaatacaaaaattagccagatgtggtg---catgcctgt-aatcccagctg-ttgggaagctgaggcaggagaatcgcttgaacccaggaggcagaggctgcagtgagccaagatcatgccactgcactccagcctgggcaacagagtgaaactctgtctcaa--aaaa i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223562363 236 - 227556264 atggtgggtggatcacctgaggtcaggagttcgggaccagcctggccaacattgtgaaaccccgtctctactaaaaatacaaaaattagccaggtatggtggtgcatgcctgt-aatcccagtgt-ttgggaggctgaggcaggagaatcacttcaacccagggggcagaggttacagtaagccaagatcatgccactgtactctagcctgggcaacagagtgaaactctgtctcaa-----a i macFas5.chr1 C 0 I 38 s papAnu2.chr1 16613418 236 - 220367699 atggtgggtggatcacctgaggtcaggagttcgggaccagcctggccaacattgtgaaaccccgtctctactaaaaatacaaaaattagccaggtatggtggtgcatgcctgt-aatcccagtgt-ttgggaggctgaggcaggagaatcacttcaacccagggggcagaggttacagtaagccaagatcatgccactgtactctagcctgggcaacagagtgaaactctgtctcaa-----a i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82411365 237 + 85787240 atggtgggtggatcacctgaggtcaggagttcgggaccagcctggccaacatagtgaaaccccgtctcaactgaaaatacaaaaattagccaggtgtggtggtacatgcctgtaaatcccagttt-ttgggaggctgaggcaggagaatcgcttcaacccaggaggcagaggttacagtacgccaagatcatgctgctgtactccagcttgggcaacagagtgaaactctgtctcaa-----a i chlSab2.chr25 C 0 I 16 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14092622 2697 - 49578535 I e rheMac3.chr1 16801844 1784 - 229590362 I a score=8241.000000 s hg38.chr1_KI270759v1_alt 87477 13 + 425601 agaaagaaaaaaa s panTro4.chr1 224836360 11 + 228333871 --aaaaaaagaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226193908 13 - 229942017 aaaaaaaaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140083089 13 - 143122389 aaaaaaaaaaaaa i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223562637 13 - 227556264 aataataataata i macFas5.chr1 I 38 I 11 s papAnu2.chr1 16613655 13 - 220367699 aataataataata i papAnu2.chr1 I 1 I 11 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14092622 2697 - 49578535 I e rheMac3.chr1 16801844 1784 - 229590362 I e chlSab2.chr25 82411602 16 + 85787240 I a score=1353089.000000 s hg38.chr1_KI270759v1_alt 87490 762 + 425601 aaatttgtcttttctttcctatttgtcaaactttgtaaaaacttcatcttgtaaataattggttgaga---tgttcttttctgctgtaataattttaatttccaagagcttctctttgttgttactttgtctctgcatcttccttttttatggcattctgttcttgcttcatggatgcaatattttcattgatctctcagaatgtttgatacttggttttgtttcattctgtttcacttttattcttcctgtattgtttctccttccgcaaagatggcttctg--ttgttttgttttcttctcttttgtatcatatgttttcctcaaatatttggtgatccttggctgactgattgtaatttgggagtgagacgcagaataactcaaggaggagcatggaagggattggtgagtgtggtcttacctgtgtggtgacttgaagaagccattttcttccgtttctttaggtcttttcttttgagttgttgagatctcccaggaaagactcttctaatttccagcttgctgagtgtaaattttggctgccaggttttgggagctaagaggaagaagacaagggagatttcaaatttagtgtgtaaactttgactcagcccccttgtttttggtttcctgcttctaactgaacctagtgtgttctagcctagatgccctgggtgttattctctccaagaacaaacctttaatctctgccagatggggaggtacagtcacccagctacctgggggaggggaaggggtcaggg s panTro4.chr1 224836371 762 + 228333871 aaatttgtcttttctttcctatttgtcaaactttgtaaaaacttcatcttgtaaataattggttgaga---tgttcttttctgctgtaataattttaatttccaagagcttctctttgttgttactttgtctctgtatcttccttttttatggcattctgttcttgcttcatggatgcaatattttcattgatctctcagaatgtttgatacttggttttgtttcattctgtttcacttttattcttcctgtattgtttctccttccgcaaagatggcttctg--ttgttttgttttcttctcttttgtatcatatgttttcctcaaatatttggtgatccttggctgactgattgtaatttgggagtgagacacagaataactcaaggaggagcatggaagggattggtgagtgtggtcttacctgtgtggtgacttgaagaagccattttcttccgtttctttagttcttttcttttgagttgttgagatctcccaggaaagactcttctaatttccagcttgctgagtgtaaattttggctgccaggtttcgggagctaagaggaagaagacaagggagatttcaaatttagtgtgtaaactttgactcagtccccttgtttttggtttcctgcttctaactgaacctagtgtgttctagcctagatgccctgggtgttattctctccaagaacaaacctttaatctctgccagatggggaggtacagtcacccagctacctgggggaggggaaggggtcaggg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226193921 762 - 229942017 aaaattgtcttttctttcctatttgtcaaacttttaaaaaacttcatcttgtaaataattggttgaga---tgttcttttctgctgtaataattttaatttccaagagcttctctttattgttactttgtctctgcatcttccttttttatggcattctgttcttgcttcatggatgcaatattttcattgatctctcagaatgtgtgatacttggttttgtttcattctgtttcacttttattcttcctgtattgtttctccttccgcaaagatggcttctg--ttgttttgttttcttctcttttgtatcatatgttttcctcaaatatttggtgatccttggctgactgatcataatttaggagtgagacacagaataactcaaggaggagcgtggaagggattggtgagtgtggtcttacctgtgtggtgacttgaagaagccattttcttccgtttctttagttcttttcttttgagttgttgagatctcccaggaaagactcttctaatttccagcttgctgagtgtaaattttggctgccaggttttgggagctaagaggaagaagacaagggagattgcaaatttagtgtgtaaactttgactcaatccccttgtttttggcttcctgcttctaactgaacctagtgtgttctagcctagatgccctgggtgttattctttccaagaacaaacctttaatctctgccaggtggggaggtacagtcatccagctacctgggggagaggaagggatcaggg i ponAbe2.chr1 C 0 I 279 s nomLeu3.chr5 140083102 763 - 143122389 aaatttgtcttttctttcctatttgtcaaactttttaaaaacttcatcttgtaaataattggttgagatgttgttcttttctgctgtaataattttaatttccaagagcttctc--tgttgtttctttgtctctgcatcttccttttttatggcattctgttcttgcttcatggatgcaatattttcattgatctctcagaacgtttgatacttggttttgtttcgttctgtttcacttttattcttcgtgtattgtttctccttccgcaaagatggcttctg--ttgttttgttttcttctcttttgtatcatatgttttcctcaagtatttggtgatccttggctgactgattgtaatttaggagtgagacgcagaataactcaaggaggagcatggaagggattggtgagtgtggtcttacctgtatggtgacttgaagaagccattttcttccatttctttagttcttttcttttgagttgttgagatctcccaggaaagactcatctaatttccagcttgctgagtgtaaattttggctgccaggttttgggagctaagaggaagaagacaagggagatttcaaatttagtgtgtaaaccttgactcaatccccttgtttttggtttcctgcttctaactgaacctagtgcgttctagcctagatgccctgggtgttattctctccaagaacaaacctttaatctctgccaggtggggaggtacagtcacccagctacctgggggagaggaagggatcgggg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223562661 757 - 227556264 tattttgttttttctttcctatttgtcaaactttttaaaaacttcatcttgtaaataattggttgaga---tgttcttttctgctataatacttttaatttccgagagcttctctttgttgttac--tgtctctgcatcttccttttttatggcgttctgttcttgcttcatggatgcaatattttcattgatctctcagaatgtttgatgcttggttttgttttgttctgtttcagttttattcttcctgtattgtttctctttctgcaaagatggcttcagatgtgttttgttttcttctcttttgtatcatatgttttcctcaaatacttggtgatccttggctgactgatcgt-atttaggagtgaggcacagaataactcaaggaggagcatggaagggattgttgagtgtggtcttacccatgtggtgacttgaaaaagccattttcttccatttctttagttcttttcttttgagttgttgagatctcccagggaagactcttctagtttccagcttgctgagtgtaaattttggctgccagtttttgagagctaagaggaagaagacaagggagatttcaaatttagggtgtaaactttgactcgattcccttgtttttagcttcctgcttctaactgaacctagtgtgtttcagcctagatgcccagggttttat----tctaagaacaaacctttaatctctgccaggtgggaagctacagtcacccagctgcctggaggagaggaagggatcgggg i macFas5.chr1 I 11 C 0 s papAnu2.chr1 16613679 757 - 220367699 tattttgtcttttctttcctatttgtcaaactttttaaaaacttcatcttGTAAATAATTGGTTGAGA---TGTTCTTTTCTGCTATAATACTTTTAATTTCCGAGAGCTTCTCTTTGTTGTTAC--TGTCTCTGcatcttccttttttatggcgtTCTGTTCTTGCTTCATGGATGCAATATTTTCATTGATCTCTCAGAATGTTTgatgcttggttttgttttgttctgtttcagttttattcttcctGTATTGTTTCTCTTTCTGCAAAGATGGCTTcagatatgttttgttttcttctcttttgtatCATATGTTTTCCTCAAATACTTGGTGATCCTTGGCTGACTGATCGT-ATTTAGGAGTGAGGCACAGAATAACTCGAGGAGGAGCATGGAAGGGATTGTTGAGTGTGGTCTTACCCATACGGTGACTTGAAAAagccattttcttccatttctttagttcttttcttttgagttgtTGAGATCTCCCAGGGAAGACTCTTCTAGTTTCCAGCTTGCTGAGTGTAAATTTTGGCTGCCAGTTTTTGAGAGCTAAGAGGAAGAAGACAAGGGAGATTTCAAATTTAGGGTGTAAACTTTGACTCAATTCCCTTGTTTTTAGCTTCCTGCTTCTAACTGAACCTAGTGTGTTTCAGCCTAGATGCCCAGGGTTTTAT----TCTAAGAACAAACCTTTAATCTCTGCCAGGTGGGAAGCTACAGTCACCCAGCTGcctggaggagaggaagggatcGGGG i papAnu2.chr1 I 11 C 0 s chlSab2.chr25 82411618 754 + 85787240 aattttgtcttttctttcctatttgtcaaactttttaaaaacttcatcttgtaaataattggttgaga---tgttcttttctgctgtaatacttttagtttccgagagcttctctttgttgtta------ctttgtatcttccttttttatggcattctgttcttgcttcatggatgcaatattttcattgatctctcagaatgtttgatgcttggttttgttttgttctgtttcagttttattctttctgtattgtttctccttctgcaaagatggcttcaaatatgttttgttttcttctcttttgtatcatatgttttcctcaaatacttggtgatcctgggctgac---tcgt-atttaggagtgaggcacagaataactcaaggaggagcatggaagggattgttgagtgtggtcttacccgtatggtgacttgaagaacccattttcttccatttctttagttcttttcttttgagttgttgagatctcccagggaagactcttctagtttccagcttgctaagtgtaaattttggctgccagtttttgagagctaagaggaagaagacaagggagatttcaaatttagggtgtaaactttgactcgattcccttgtttttagcttcctgcttctaactgaacctagtgtgttccaacctagatgcccagggttttattctctctaagaacaaacctttaatctctgtcaggtgggaagctacagtcacccagctgcctggaggagaggaagggatcgggg i chlSab2.chr25 I 16 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14092622 2697 - 49578535 I e rheMac3.chr1 16801844 1784 - 229590362 I a score=822154.000000 s hg38.chr1_KI270759v1_alt 88252 462 + 425601 attcgaactgcttcttaaacagaattgcaatcagtccccttggacttagctccaccgttgtcctcactgcctgcaatatctggggccaccaactcttgagccttttgggggttttgaggtctgaacggtgttgtttgcagctttgcctatcactagcttgagactcatctttggatctgctaagtcagttactgctcacctgtcttggctccagctgttaaaatcctgttgcagtttcttcctctcccattttctctgtcgtcgtgagtttctgccatcttaaaaattctttattgtcattttattagggtttcaggagagagcagtgctccatgcatgtatttaatccactaactttaaccagaagtA--TTTTTTTAAACATTTGGAAAGCAggctgcgtgccgtgactaatgcctgtaatcctagcattttaggaggccaaggcaggcagatcacctgagg s panTro4.chr1 224837133 462 + 228333871 attcgaactgcttcttaaacagaactgcaatcagtccccttggcctgagctccaccgttgtcctcactgcctgcattatctggggccaccaactcttgagccttttgggggctttgaggtctgaacggtgttgtttgcagctttgcctatcactagcttgagactcatctttggatctgctaagtcagttactgctcacctgtcttggctccagctgttaaaatcccgttgcagtttcttcctctcccattttctctgtcgtcgtgagtttctgccatcttaaaaattctttattgtcattttattagggtttcaggagagagcagtgctccatgcatgtatttaatccactaactttaaccagaagtA--TTTTTTTAAACATTTGGAAAGCAggctgcgtgccgtgactaatgcctgtaatcctagcattttaggaggccgaggtgggcagatcacctgagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226194962 462 - 229942017 attcgaactgcttcttaaacagagttgcaatcagtccccttggccttagctccaccgttgtcctcactgcctgcaatatctggggccaccaactcttgagccttttgggggttttgaggtctgaactgtgttgtttgcagctttgcctatcactagcttgagactcatctttggatctgctaagtcagttaccactcacctgtcttggttccagcttttaaaatcctgttgcagttgcttcctctcccattttctctgtcgtcgtgagtttctgccatcttaaaaattctttattgtcattttattagggtttcaggagagagcagtgctccatgcatatatttaatccacgatctttaaccagaagtA--TTTTTTTAAACATTTGGAAAGCAGgctgggtgccgtgactaacgcctgtaatcctagcattttaggaggccgaggcgggcagatcacctgagg i ponAbe2.chr1 I 279 M 613 s nomLeu3.chr5 140083865 460 - 143122389 attctaactgcttcttaaacagagctgcaatcagtccccctggccttagctccaccattgtcctcactgcctgcaatatctggggccaccaactgttgagccttttgggggttttgaggtctgacctgtgttgtttgcagctttgcctatcactagcttgagactcatctttggatcagc--agacagttaccactcacctgtcttggctccagcttttaaaatcttgttgcggttccttcctctcccattttctctgtcgttgtgagtttctgccatcttaaaaattctttattgtcattttattagggtttcaggagagagcagtgctccatgcatgtatttaatccactatctttaaccagaagtA--TTTTTTTAAACATTTGGAAAGCAggctgggtgccgtgactaacgcctgtaatcctagcattttaggaggccgaggtgggcagatcacctgagg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223563418 463 - 227556264 attctaactgcttcttaaacagagttgcagtcagtccccttggccttagctccaccattgtccccactgcctgcagtatctggggccatcaactcttgagccttttgggagttttggggtctgaactgtgttggttgcagctttgcctgtcactagcttgagactcatctttggatctgctaagtcagtcaccactcacctgtcttggttccagcttttaaaatcttgctgcagttgctttttctcccattttctttgtccttgtgagtttttgccatcttaaaaatcctttattgtcattttattagggtttcaggagagagcagtgctccatgcatgtgtttaatccactgtctttgaccagaagtA-TTTATTTTAAACATTTGAAAAGCAggctgggtgccgtggctcacgcctgtaatcctagcattttaggaagccgaggcgggcagatcacctgagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16614436 464 - 220367699 ATTCTAACTGCTTCTGAAACAGAGTTGCAGTCAGTCCCCTTGGCCTTAGCTCCACCATTGTCCCCACTGCCTGCGGTATCTGGGGCCATCAACTCTTGAGCCTTTTGGGAGTTTTGGGGTCTGAACTGTGTTGGTTGCAGCTTTGCCTGTCACTAGCTTGAGACTCATCTTTGGATCTGCTAAGTCAGTCACCACTCACCTGTCTTGGTTCCAGCCTTTAAAATCTTGCTGCAGTTGCTTCTTCTCCCATTTTCTTTGTCCTTGTGAGTTTTTGCCATCTTAAAAAtcctttattgtcattttattagGGTTTCAGGAGAGAGCAGTGCTCCATGCATGTGTTTAATCCACTGTCTTTGaccagaagtatttttttttaaacatttgaaaagcaggctgggtgccgtggctcatgcctgtaatcctagcattttaggaagccgaggcgggcagatcacctgagg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82412372 461 + 85787240 attttaactgcttcttaaacagagttgca-tcagtccccttggccttagctccaccattgtccccactgcctgcagtatctggggccaccaactcttgagccttttggggattttggggtctgaactgtgttggttgcagctttgcctgtcactagcttgagactcatctttggatctgctaagttggtcaccacccacctgtcttggttccagcttttaaaattttgttgcagttgcttcttctcccattttctttgtccttgtgagtttttgccatcttaaaaatcctttattgtcattttattagggtttcaggagagagcagtgctccatgcatgtgtttaatccactgtctttaaccagaagtA--TGTTTTTAAACATTTGAAAAGCAggctgggtgccgtggctcacgcctgtaatcctagcattttaggaagccgaggcgggcagatcacctgagg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14092622 2697 - 49578535 I e rheMac3.chr1 16801844 1784 - 229590362 I a score=245720.000000 s hg38.chr1_KI270759v1_alt 88714 193 + 425601 tcaggagttcaagac-aaacctggccaacatggtgaaatcccatctgtactaaaaatataaaaattaaccaggcgtggtggcacaggcctgtagtctcagttacttggaaggctgaggcaggagaattgcttgaaccagggaggcagaggttgcacagagccaagattgcaccactgcactccagcctgggcag s panTro4.chr1 224837595 193 + 228333871 tcaggagttcaagac-aaacctggccaacatggtgaaatcccatttctactaaaaatataaaaattaaccaggcgtggtggcacaggcctgtagtctcagttacttggaaggctgaggcaggagaattgcttgaaccagggaggcagaggttgcacagagccaagattgcaccactgcactccagcctgggcag i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140084325 193 - 143122389 tcaggagttcaaaac-aaacctggccaacatggtgaaatcccgtctctactaaaaatataaaaattaaccaggcgtggtggcacacgcctgtagtctcagttacttggaaggctgaggcaggagaattgcttgaaccagggaggcagaagttgtatagagccaagattgcaccactgcactccagcctgggcag i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223563881 194 - 227556264 tcaggagttcaagactaaacctggccaacatggtgaaaccccgtctctactaaacatgtaaaaattaaccaggcatggtggcgcacacctgtagtctcagttactcaggaggctgaggcaggcacattgcttgaactagggaggcagaggttgcacagagccaagattgtgccactgcactccagcctgggcag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16614900 194 - 220367699 tcaggagttcaagactaaacctggccaacatggtgaaaccccgtctctactaaacatgtaaaaattaaccaggcatggtggcgcacacctgtagtctcagttactcaggaggctgaggcaggcaaattgcttgaactagggaggcagaggttgcacagagccaagattgtgccactgcactccagcctaggcag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82412833 194 + 85787240 tcaggagttcaagactaaacctggccaacatggtgaaaccccgtctctactaaaaatgtaaaaattaaccaggcatagtggcgcacacctgtagtctcagttactcaggagactgaggcaggcaaattgcttgaactagggaggcagaggttgcacagagccaagattgtgccactgcactccagcctgggcag i chlSab2.chr25 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14092622 2697 - 49578535 I e rheMac3.chr1 16801844 1784 - 229590362 I e ponAbe2.chr1 226195424 613 - 229942017 M a score=115555.000000 s hg38.chr1_KI270759v1_alt 88907 73 + 425601 cagagcaagactctgtctcaagaaataaaaaataaaaatataaaaaTATAAAGCATTAAAAAGTACCTTCAAG s panTro4.chr1 224837788 73 + 228333871 cagagcaagactctgtctcaagaaataaaaaataaaaatataaaaaTATAAAGCATTAAAAAGTACCTTCAAG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140084518 73 - 143122389 cagagcaagactctgtctcaagaaataaaaaatataaatataaaaaTATAAAGCATTAAAAAGTACCTTCAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16803628 73 - 229590362 CAGAGCAAGACTCTGCCTCAAGaaataaaaaataaaaacataaaaatataaaGCGTTAAAAAGTACCTTCAAG i rheMac3.chr1 I 1784 I 10 s macFas5.chr1 223564075 73 - 227556264 cagagcaagactctgcctcaagaaataaagcataaaaatataaaaaTATAAAGTGTTAAAAAGTACCTTCAAG i macFas5.chr1 C 0 I 11 s papAnu2.chr1 16615094 52 - 220367699 cagagcaagactctgcctcaag---------------------aaaTATAAAGTGTTAAAAAGTACCttcaag i papAnu2.chr1 C 0 I 11 s chlSab2.chr25 82413027 73 + 85787240 cagagcaagactctgccttgagaaataaaaaataaaaatataaaaaTATAAAGCGTTGAAAAGTACCTTCAAG i chlSab2.chr25 C 0 I 10 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14092622 2697 - 49578535 I e ponAbe2.chr1 226195424 613 - 229942017 M a score=24102.000000 s hg38.chr1_KI270759v1_alt 88980 16 + 425601 Tttttttctttctttt s panTro4.chr1 224837861 9 + 228333871 tttttttc-------t i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226196037 13 - 229942017 tttttttctttc---t i ponAbe2.chr1 M 613 C 0 s nomLeu3.chr5 140084591 16 - 143122389 TTtttttctctctctt i nomLeu3.chr5 C 0 I 109 s rheMac3.chr1 16803711 16 - 229590362 tttttttcttttttct i rheMac3.chr1 I 10 C 0 s macFas5.chr1 223564159 16 - 227556264 tttttttcttttttct i macFas5.chr1 I 11 C 0 s papAnu2.chr1 16615157 16 - 220367699 tttttttcttttttct i papAnu2.chr1 I 11 C 0 s chlSab2.chr25 82413110 16 + 85787240 TTTTTTTCttttttct i chlSab2.chr25 I 10 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14092622 2697 - 49578535 I a score=645924.000000 s hg38.chr1_KI270759v1_alt 88996 299 + 425601 -tttttt----tttttttttgagatggagtttcactcttgttgcccgggctagagtgcaatggcacgatctcggctcaccgcagtctccacctcccaggttcaagtgagtctcctgcctcagcctcccgagtagctgatattacaggtgctcgccaccacgcctggctaa-ttttttgtatttatagtagagatgggatttcaccatcttggccaggctggtttcgaactcctgacctcaggtgatcacaccctccttggcctcccaaagtgctaggattacaggactgagccatcacgcccagc s panTro4.chr1 224837870 299 + 228333871 -tttttt----tttttttttgagatggagtttcactcttgttgcccaggctggagtgcaatggcatgatctcggctcaccgcagtctccacctcccaggttcaagtgagtctcctgcctcagcctcccaggtagctggtattacaggtgctcaccaccacgcctggctaa-ttttttgtatttatagtagagatgggatttcaccatcttggccaggctggtttcgaactcctgacctcaggtgatcacaccctccttggcctcccaaagtgctaggattacaggactgagccaccatgcccagc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226196050 299 - 229942017 -tttttc----ttttttttggagatggagtttcgttcttgttgcccaggctggagtgcaatggcacgatctcggctcactgcagtctccacctcccaggttcaagtgagtctcctgcctcagcctcccaagtagctggtattacaggtgctcgccaccacgcctgggtaa-ttttttgtatttttagtagagatggtgtttcaccatcttggccaggctggtttcgaactcctgacctcaggtgatcacaccctccttggcctcccaaagtgctaggattacaggagtgagccaccacgcctggc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140084716 297 - 143122389 -tctttt----tctttcttt--gatggagtttcactcttgttgtctgggctggagtgcagtggcgtgatctcggctcactacagtctccagctcccaggttcaactgagtctcctgcctcagcctcccgggtagctggtattacaggtgcttgccaccacgcctgggtaatttttttgtatttttagtagagatggggtttcaccatcttggccaggctggtttcgaactcctgacctcaggtgatc-caccctccttggcctcccaaagtgctaggattacaggagtgagctgccacgcctggc i nomLeu3.chr5 I 109 C 0 s rheMac3.chr1 16803727 299 - 229590362 ttctttc---ttttttttttgagatggagtttcgctcttgttgcccaggctggagtgcaatggcgtgatctcggctcactgcagcctccgcctcccaggttcaagtgact-gtctgcctcagcctcccgagtagctgggattacaggtg-ccgccaccaggcctggctcctttttttgtatttttagtagagatggggtttcaccatcttggccaggctggtctcgaactcctgacctcaggtgatc-tgcccaccttggcctccgaaagtgttgggattacaggagtgagccaccgcgcccggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223564175 298 - 227556264 ttctttc----tttttttttgagatggagtttcgctcttgttgcccaggctggagtgcaatggcgtgatctcggctcactgcggcctccgcctcccaggttcaagcgact-gtctgcctcagcctcccgagtagctgggattacaggtg-ccgccaccaggcctggctcatttttttgtatttttagtagagatggggtttcaccatcttggccaggctggtctcgaactcctgacctcaggtgatc-tgcccaccttggcctccgaaagtgctgggattacaggagtgagccaccgcgcccggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16615173 300 - 220367699 ttctttc----tttttttttgagatggagttttgctcttgttgccccggctggagtgcaatggcgtgatcttggctcactgcagcctccgccacccaggttcaagtgagtcttctgcctcagcctcccgagtagctgagattacaggtgcccgccaccaggcctggctcatttttttgtatttttagtacagacggggtttcaccatcttggccaggctggtctcaaactcctgacctcaggtgatc-tgcccaccttggcctcccaaagtgctgggattacaggagtgagccaccgcgcccggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82413126 299 + 85787240 tcctttctttttttttttttgagatggagtttcgctctggttgcccaggctggagtgcaatggtgcgatattggctcactgcagcctccgcctcccaggttcaagggagtcttctgcctcagcctcccgagtagctgggattacaggtgcccgccaccaggcctggctcatttttttgtatttttagtacagacggggtttcaccatcttggtcaggctggtcttgaactcctgacctcaggtgatc-tgccctccttggcctcccaaagtgctaggattacaggagtgagccacagt-----gc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I e calJac3.chr19 14092622 2697 - 49578535 I a score=3600.000000 s hg38.chr1_KI270759v1_alt 89295 1 + 425601 c s panTro4.chr1 224838169 1 + 228333871 c i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226196349 1 - 229942017 c i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140085013 1 - 143122389 c i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16804026 1 - 229590362 c i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223564473 1 - 227556264 c i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16615473 1 - 220367699 c i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82413425 1 + 85787240 c i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14095319 1 - 49578535 C i calJac3.chr19 I 2697 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36269955 4144 + 80974532 I a score=1464539.000000 s hg38.chr1_KI270759v1_alt 89296 499 + 425601 AAGGTGTTTTCTTAGTAGGTGAAATTACT--GAGTTAGAAGCATTTATTCAGGACCTACTCCTTCTTAAACAAAGTCATTGTT-TTGTTTCTTCATTCGCCTATGTCTGCAATATTATAGAGCTAGTTCAAAAGTAAGCAGTTTGATTTTGGCTCCAACATTGAGCAATCATAATGTAATACTAGGTTCAAATGTGAGTAGATTTGAGTGCATGTCGATGTTGAAAATAAACTCACTATTGGAGTGTTTT-AGGATGCTCTGGCTTTCCAGGATGGATATTACTTAGGAGTAGGTTGGCTCTGGGTTTTTTCCTGGGTTCTTGATTTGCTTGATTTGGTT--CTTATATAATCTATTCTTTCTTTCCCTTTCCTTCTCCAGAAACAGCTCAAATTATGAAATAACTTTCAAAAACAAGTTAGGTGGTAGTAGTGGAGGTA---GTGAAGGAAAACAGGGAACTTTCCTGTTCGCTGCAGAGCAAACCAGGTGCCACGTAGACCTTCTC s panTro4.chr1 224838170 499 + 228333871 AAGGTGTTTTCTTAGTAGGTGAAATTACT--GAGTTAGAAGCATTTATTCAGGACCTACTCCTTCTTAAACAAAGTCATTGTT-TTGTTTCTTCATTCGCCTATGTCTGCAATATTATAGAGCTAGTTCAAAAGTAAGCAGTTTGATTTTGGCTCCAAAATTGAGCAATCATAATGTAATACTAGGTTCAAATGTGAGTAGATTTGAGTGCATGTCGATGTTGAAAATAAACTCACTATTGGAGTGCTTT-AGGATGCTCTGGTTTTCCAGGATGGATATTACTTAGGAGTAGGTTGGCTCTGGGTTTTTTCCTGGGTTCTTGATTTGCTTGATTTGGTT--CTTATATAATCTATTCTTTCTTTCCCTTTCCTTTTCTAGAAACAGCTCAAATTATGAAATAACTTTCAAAAACAAGTTAGGTGGTAGTAGTGGAGGTA---GTGAAGGAAAACAGGGAACTTTCCTGTTCGCTGCAGAGCAAACCAGGTGCCACGTAGACCTTCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226196350 495 - 229942017 AAGGTATTTTCTTAGTAGGTGAAATTGCT--GAGTTAGAAGCATTTATTCAGGACCTACTCCTTCTTCAACAAAGTCGTTG---TTGTTTCTTCATTTGGCTATGTCTGCAATATTATAGAGCTAATTCAAAAGTAAGCAGTTTGATTTTGGCTCCAACATTGAGCGATCATAATGTAATACTAGGTTCAAATGTGAGTAGATTTGGGTGCATGTCGATGTTGAAAATCAACTCACTATTGGAGTGTTTT-AGGATGCTCTGGTTTTTCAGGATGGATATTACTCAGGAGTAGGTTGGTTCTGGGTTTTTTCCTGGGTTCTTGATTTGCTTAATTTGGTT--CTTATATAATCCATTCTTTCTTTCCTTTTCCTTTTCCAGAAACAGCTCAAATTATGAAATAACTTTCAAAAACAAGTTAGGTGCTAGTAGAGGAGGTA---GTGAAGGAAAAC--GGAACTTTCCTGTTCACTGCAGAACAAACCAGGTGCCACGTAGACCTTCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140085014 499 - 143122389 AAGGTATTTTCTTAGTAGGTGAAATTGCT--GAGTTAGAAGCATTTGTTCAGGACCTACTCCTTCTTAAACAAAGTGGCTGTTGTTGTTTCTTCATTTGCCTATGTCTGCAATATTATAGAGCTAATGCAAAAGTCAGCAGTTTGATTTTGGCTCCAACACTGAGCCATCATAATGTAATACTAGGTTCGACTGTGAGTAGATGTGGGTGCATGTCGATGTTGAAAATAGACTCACTGTTGGAGTGTCTG-AGGATGCTCTGGTTTTCCAGGATGGATATTACTCAGGAGTAGGTTGG-TCTGAGTTTTTCCCTGGGTTCTTGATTTGCTTGATTTGGTT--CTTACATAATCCATTCTTTCTTTCCCTTTCCTTTTCTAGAAACAGCTCAAATTATGAAATAATTTTCAAAAACAAGTTAGGTGGTAGTAGAGGAGGTA---GTGAAGGAAAACAGGGAACTTTCCTGTTCACTGCAGAACAAACCAGGTGCCACGTAGACCTTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16804027 472 - 229590362 AAGGTATTTTCTTAGTAGGTGAAATTGCT--GAGTTAGAAGCATTTATTCAGGCCCTCCTCCTTCTT----AAAGTCGTCG---TTGTTTCTTCATTTGCCTATGTCTGCAACATTATGGAGCCAATTCAAAAGTAAGCAGTTTGATTTGGGCTCCAACACTGAGCTCTCATAATGTACGACTCGGTTCAAATGGGAGTAGATTTGGGCGCGTGTCGATGTTGAAAATAAACTCACTCTTGGAGGGTTTT-AGGATACTCTGGTTTTCCAGGATGGATATTACTCAGGAGTAGGTTGGCTCTGGGTTTTTTCCTAGGTTCTTG---------ATTTGGTT--ATTATATAATCCATTCTTTCTTTCCCTTTCCTTTTCCAGAAACAGCTCAAATTAGGAAATAACTTTCAAAAACAAGTTAGGT------------GGTA---GTGAAGGAAAACAGGGAACTTTCCTGTTCACTGCAGAACAAACCAGGTGCCACGTAGACCTTCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223564474 476 - 227556264 AAGGTATTTTCTTAGTAGGTGAAATTGCT--GAGTTAGAAGCATTTATTCAGGCCCTCCTCCTTCTTAAACAAAGTCGTCG---TTGTTTCTTCATTTGCCTATGTCTGCAACATTATGGACCTAATTCAAAAGTAAGCAGTTTGATTTGGGCTCCAACACTGAGCTCTCATAATGTACGACTCGGTTCAAATGGGAGTAGATTTGGGCGCGTGTCGATGTTGAAAATAAACTCACTCTTGGAGGGTTTT-AGGATACTCTGGTTTTCCAGGATGGATATTACTCAGGAGTAGGTTGGCTCTGGGTTTTTTCCTAGGTTCTTG---------ATTTGGTT--ATTATATAATCCATTCTTTCTTTCCCTTTCCTTTTCCAGAAACAGCTCAAATTAGGAAATAACTTTCAAAAACAAGTTAGGT------------GGTA---GTGAAGGAAAACAGGGAACTTTCCTGTTCACTGCAGAACAAACCAGGTGCCACGTAGACCTTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16615474 476 - 220367699 aaggtatTTTCTTAGTAGGTGAAATTGCT--GAGTTAGAAGCATTTATTCAGGCCCTCCTCCTTCTTAAACAAAGTCGTCG---TTGTTTCTTCATTTGCCTATGTCTGCAACATTATGGAGCTAATTCAAAAGTAAGCAGTTTGATTTGGGCTCCAACACTGAGCTCTCATAATGTACGACTCGGTTCAAATGGGAGTAGATTTGGGCGCGTGTCGATGTTGAAAATAAACTCACTCTTGGAGGGTTTT-AGGATACTCTGGTTTTCCAGGATGGATATTACTCAGGAGTAGGTTGGCTCTGGGTTTTTTCCTAGGTTCTTG---------ATTTGGTT--ATTATATaatccattctttctttccctttccttttccagaaacAGCTCAAATTAGGAAATAACTTTCAAAAACAAGTTAGGT------------GGTA---GTGAAGGAAAACAGGGAACTTTCCTGTTCACTGCAGAACAAACCAGGTGCCACGTAGACCTTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82413426 476 + 85787240 AAAGTATTTTCTTAGTAGGTGAAATAGCT--GAGTTAGAAGCATTTATTCAGGCCCTCCTCCTTCTTAAACAAAGTCGTCG---TTGTTTCTTCATTTGCCTATGTCTGCAACATTATGGAGCTCATTCAAAAGTAAGCAGTTTGATTTGGGCTCCAACACTGAGCTATCATAATGTACGACTCGGTTCAAATGGGAGTAGATTTGGGCGCGTGTCGATGTTGAAAATAAACTCATTCTTGGAGTGTTTT-AGGATGCTCTGGTTTTCCAGGATGGACATTACTCAGGAGTAGGTTGGCTCTGGGTTTTTTCCTAGGTTCTTG---------ATTTAGTT--ATTATATAATCCATTCTTTCTTTCCCTTTCCTTTTGCAGAAACAGCTCAAATTAGGAAATAACTTTCAAAAACAAGTTAGGT------------GGTA---GTGAAGGAAAACAGGGAACTTTCCTGTTCACTGCAGAACAAACCAGGTGCCACGTAGACCTTCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14095320 491 - 49578535 AAGGTATTGTCTTAGGAGGTGAAATTGCTAGGCGTTGGAAGCA-TTATTCAGG-CCTCCCACTCCTTAAACACAGTCCTTA---CCGTCTCTTCATTTG-CTATGTCTGCAGTATTGCAGGTCTCATTCAAAAGTCAGCGGTGTGATTTTGGCTCCAACACTGAGCATGCATAACCTAATACTAGGTTCGAACTTCAGTAGCTTTGGGGGCGCGGTGGTGTTGAAAATGCACTCACTCTTGGAGTGCTGT-AGGCTGCTCCGGTTTTCCAGGAGGGGC-CTACTCGGGAGTAGGTCGGCTCTGGGTTTTTTCCTGAGATCTTGGTTTGCTTGATTTGGTT--CTTATATTATCCATTGTTTC------TTTCCTTTTCCAGAAACAGCTCAAATTATAAAATAACTTTAAAAAACAAGTTAGGTGGTAGTGGAGGAGGTGTC-ATGAAGGAAACCAGGAGACTTTCCTGTTCACTGAGGACCAAGCCAGGTGCCGTGTGGATTTTCTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36274099 451 + 80974532 aaGGTCTTTTCTTAGTAGGTGAAATGGCTAATAGTAGGAAGCATCCATTTAGTCCCTACTACTTCTTGAACACA----------TTTTTTTTAAATTTACTCATATCTGAAATATTATAGACCTAAAAGCAAAGTTAGTAGCTTGATTTTGGTTCCAGCATTGAGCAATCATAATGT--TATTAGGTTCAGACTCAGATACATCTGGGCTCATATATAAACTGAAGCTAGG-TCACTGTTGGAGTGTCTTAAGGATGCTCTGGCTTCCCAGGATGGAA-------------------------------TTTCTAGCATCTTG---------ATTTACTTGACCCATATAGTCCATTATTTTCATTCCTTTCCTTTTCCAGAAACATCCCATATTATGAAA-AAATTTAAAAGATCAGTGAGGTGGTTGTGGATGGGACACAGGACAAGGAAAATGTGGAACTTCCTCATTCACCGAGGAGCCAGCCAGGAGCCA---AGACTTCCCT i canFam3.chr7 I 4144 I 196 e mm10.chr1 178696080 926 + 195471971 I a score=124645.000000 s hg38.chr1_KI270759v1_alt 89795 54 + 425601 AGATGCCACTACTGGACGCAGCCCTCTAGACCTGAAGGTATGCTGGATAGACCC s panTro4.chr1 224838669 54 + 228333871 AGATGCCACTACTGGACGCAGCCCTCTAGACCTGGAGGTATGCTGGATAGACCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226196845 54 - 229942017 AGATGCCACTACTGGAAGCAGCCCTCTAGACCCGGCGGGGCGCTGGGGGGACCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140085513 54 - 143122389 AGATGCCACTACTGGAAGCAGTCCTCTAGACCTGGAGGTATGCTGGATAGAccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16804499 54 - 229590362 AGATGCCACTACTGGAAGCAGCCCTCTAGACCCGGCGGGGTGCGggatagaccc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223564950 54 - 227556264 AGATGCCACTACTGGAAGCAGCCCTCTAGACCCGGCGGGGTGCGGGATAGACCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16615950 54 - 220367699 AGATGCCACTACTGGAAGCAGCCCTCTAGACCCGGCGGGGTGCCGGCTAGACCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82413902 54 + 85787240 AGATGCCACTACTGGAAGCAGCCCTCTAGACCTGGAGGTATGCTggatagaccc i chlSab2.chr25 C 0 I 468 s calJac3.chr19 14095811 26 - 49578535 AGATGCGGCTTCTGGAAGCTGCCCTC---------------------------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36274550 196 + 80974532 I a score=18181.000000 s hg38.chr1_KI270759v1_alt 89849 7 + 425601 GGATAGA s panTro4.chr1 224838723 7 + 228333871 GGATAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226196899 7 - 229942017 GGATGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140085567 7 - 143122389 ggatggg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16804553 7 - 229590362 ggataga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223565004 7 - 227556264 GGATAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16616004 7 - 220367699 GGATAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82414424 7 + 85787240 ggataga i chlSab2.chr25 I 468 C 0 s calJac3.chr19 14095837 4 - 49578535 ---TAGA i calJac3.chr19 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36274550 196 + 80974532 I a score=20734.000000 s hg38.chr1_KI270759v1_alt 89856 6 + 425601 CCCGGC s panTro4.chr1 224838730 6 + 228333871 CCCGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226196906 6 - 229942017 CCCGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140085574 6 - 143122389 cccggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16804560 6 - 229590362 cccggc i rheMac3.chr1 C 0 I 620 s macFas5.chr1 223565011 6 - 227556264 CCCGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16616011 6 - 220367699 CCCGGC i papAnu2.chr1 C 0 I 408 s chlSab2.chr25 82414431 6 + 85787240 cccggT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14095841 6 - 49578535 CCCAGC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36274746 6 + 80974532 cccccc i canFam3.chr7 I 196 C 0 e mm10.chr1 178696080 926 + 195471971 I a score=25826.000000 s hg38.chr1_KI270759v1_alt 89862 9 + 425601 GGGGTGCTG- s panTro4.chr1 224838736 9 + 228333871 GGGGTGCTG- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226196912 9 - 229942017 GGGGCGCTG- i ponAbe2.chr1 C 0 I 409 s nomLeu3.chr5 140085580 9 - 143122389 ggggcgccg- i nomLeu3.chr5 C 0 I 63 s rheMac3.chr1 16805186 9 - 229590362 GGGGTGCTG- i rheMac3.chr1 I 620 I 1 s macFas5.chr1 223565017 9 - 227556264 GGGGTGCCG- i macFas5.chr1 C 0 I 634 s papAnu2.chr1 16616425 9 - 220367699 GGGGTGCTG- i papAnu2.chr1 I 408 I 1 s chlSab2.chr25 82414437 9 + 85787240 GGGGTGCTG- i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14095847 9 - 49578535 GGTGTGCTG- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36274752 10 + 80974532 ggggagcctg i canFam3.chr7 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I a score=314011.000000 s hg38.chr1_KI270759v1_alt 89871 132 + 425601 AGCCCAAGCGTGTGCCAGGGTGGG-AGGATTTACACTTCAGAAACTGGCAGATGCTATGAAATCA--GAACCTTT----TTTCCTGGCAAGCTGGTATTTAAATCTTAACCAGCATGCTTCTGTCTAGACCTGACTTTA s panTro4.chr1 224838745 132 + 228333871 AGCCCAAGCGTGTgccagggtggg-aggatttacacttcagaaactggcagatgctatgaaatca--gaaccttt----tttcctggcaagctggtatttagatcttaaccagcatgcttctgTCTAGACCTGACTTTA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140085652 133 - 143122389 AGCCCAAGCGTGTgccatggtgggaaggatttacatttcagaaactggcagatgctatgaaatca--ggaccttt----ttccctggcaagctggtatttaaatcttaaccagcatacttctgTCTAGACCTGACTTTA i nomLeu3.chr5 I 63 C 0 s rheMac3.chr1 16805196 132 - 229590362 AGCCCAAGTGTATgccatgatggg-aggatttacacttcagaaactggcaaatgctgtgaaatca--ggaccttt----tttcctggcaagctggtgtttaaatcttaaccagcatgcttctgTCTAGACCTGACTTTA i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223565660 132 - 227556264 AGCCCAAGTGTATgccatgatggg-aggatttacacttcagaaactggcaaatgctgtgaaatca--ggaccttt----tttcctggcaagctggtgtttaaatcttaaccagcatgcttctgTCTAGACCTGACTTTA i macFas5.chr1 I 634 C 0 s papAnu2.chr1 16616435 132 - 220367699 AGCCCAAGTGTATGCCATGATGGG-AGGATTTACACTTCAGAAACTGGCAAATGCTGTGAAATCA--GGACCTTT----TTTCCTGGCAAGCTGGTGTTTAAATCTTAACCAGCATGCTTCTGTCTAGACCTGACTTTA i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82414447 132 + 85787240 AGCCCAAGTGTATgccatgatggg-aggatttacacttcagaaactggcaaatgctatgaaatca--ggaccttt----tttcctggcaagctggtgtttaaatcttaaccagcatgcttctgTCTAGACCTGACTTTA i chlSab2.chr25 I 1 C 0 s calJac3.chr19 14095856 134 - 49578535 GAGCCGAGTGTGAgccatcacggg-agggtttacaccacagggactggcaagtgctatgaaacca--gggtcctt--gctttcctggaaagctggtgtttaaatcttaaccagcatgctcctgTCTAGACCTGACTTTA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36274762 134 + 80974532 atgccagacttgatccaggaacct-gggatcacaacctgagccaaaggcagacgct---caaccactgagccacccaggtgccccAGAAAACTGATTTTTAAGTCCGTATTAGCACAC-CATGCGCAGGCCTGACTTTA i canFam3.chr7 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e ponAbe2.chr1 226196921 409 - 229942017 I a score=2397110.000000 s hg38.chr1_KI270759v1_alt 90003 761 + 425601 CTCTTGGGGCAATCTGATATACCCCCCAAAGTGTCATAATCACGTCAGCCTACCCGTATG-----ACATTGTATTTATTCACTGCACTGTGAGCTCcagggagtccaggtgatagaataggcaaagggcaaaatttggagccagacagcctgacatttacatccttccttggctacttctagctctgtgacctttggcaaacctctgaaagcctcggcttcagtttcttaatctgtagaacagggggggaaatttcttcctagcgatggtgttgtaaaaaATTCACAACTGTGGCAGCCTCTGCTCTCCCAAAACCATGTCCTCTAGAAAATCCTGGCTTTATGGAGTAGGTTCCTCTGTGGCCTGTTTCTGTTTGGCAGCAGGCTTGTGACGTCTTTGCttagggtccttatttttataacagaatactg-----actttttgtttatatggtttccaaaatttatgaagcc---ac-taatcaaaaacatgggatcagtgtacttcagactcttacaagggaatataatgttagacagacttctctccggtgctccAAATCCCACAAGAGGAACAGTTTTGTTAAGGGGCAGTCATTTAAAGGATGACTCACAAATTATCTG--TCTATTCTAAGTTATACCTTTGAATAAAATTAAAATACCAAATAAAATATGTATGCATTGGGACAACATCAACATAATCATTTTTATAA--------TCACTCAAAACTGTGTCTTAATCATATGGCTTCAAACCTTTATTGCAAATTATTATAAgaaa s panTro4.chr1 224838877 761 + 228333871 CTCTTGGGGCAATCTGATATACCCCCCAAAGTGTCATAATCACGTCAGCCTACCCGTATG-----ACATTGTATTTATTCACTGCACTGTGAGCTCcagggagtccaggtgatagaataggcaaagggcaaaatttggagccagacagcctgacatttacatccttccttggctacttctagctctgtgacctttggcaaacctctgaaagcctcggcttcagtttcttaatctgtagaacggggggggagatttcttcctagcgacggtgttgtaaaaaATTCACAACTGTGGCAGCCTCTGCTCTcccaaaaccatgtcctctagaaaatcctggctttatggagtaggttcctctgtggcctgtttctgtttggcagcaggcttgtgacgtctttgcttagggtccttatttttataacagaatactg-----actttttgtttatatggtttccaaaatttatgaagcc---ac-taatcaaaaatatgggatcagtgtacttcagactcttacaagggaatataatgttagacagacttctctccggtgctccaaatcccaccagaggaacagttttgttaaggggcagtcatttaaaggatgactaaaaaattatctg--tctattctaagttatacctttgaataaaattaaaataccaaataaaatatgtatacattgggacaacagcaacataatcatttttataa--------tcactcaaaactgtgtcttaatcgtatgccttcaaacctttattgcaaattattataagaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226197330 761 - 229942017 CTCTTGGGGC-ATCTGATATACCCCCCAAAGTGTCATAATCACGTCAGCCTACCCGTATG-----ACATTGTATTTATTCACTGCACTGTGAGCTCcagggagtccaggtgatagaataggcaaagggcaaaatttggagccagacagcctgacatttacatccttccttggctacttctagctctgtgacctttggcaaacctctgaaagcctcggcttcagtttcttcatctatagaac--ggggaaaaatttcttcctagcaatggtgttgtaaaaaattaaCGACTGTGACAGC--CTGCTCTCccaaaaccatgtcctgtagaaaatcctggctttgttgagtaggttcctctgtggcctgtttctatttggcagcaggcttgtgacatctttgcttagggtccttacttttataacaaaatactgactttactttttgtttatatggttaccaaaatttatgaagcc---ac-taatcaaaaatatgggatcagtgtacttcagactctcacaagagaatataatcttagacagacttctctccggtgctccaaatcccacgagaggaacagttttgttaaggggcagtcatttaaaggatgactaacaaattatcta--tcaattctaagttatacctttgaataaaattaaaataccaaataaaatatgtatacattgggacaacatcaacataatcctttttataa--------tcactcaaaactgtgtcttaatcttatgccttgaaacctttattgcaaattattataagaaa i ponAbe2.chr1 I 409 C 0 s nomLeu3.chr5 140085785 761 - 143122389 CTCTTGGGGCAATCTGATATACCCCCCAAAGTGTCATAATCATGTCAGCCTACCCGTATG-----ACATTGTGTTTATTCACTGCACTGTGAGCTCcagggagttcgggtgatagaataggcaaagggcaaaatttggagccagacagcctgacctttacatccttccttggctacttctagctctgtgacctttggcaaacctctgaaagccttggcttcagtttcttaatctgtagaacagggggaaaagattcttcctagtaatggtgttgtaaaaaattaaCAACTGTGACAGC--CTGCTCTcccaaaacaatgtcctgtagaaaatcctggc---acagagtaggttcctctgtggcctgtttctgtttggcaggaggcttgtgacatttttgcttagggtccttatttttataacaaaatactaactttactttttgtttatatggtttccaaaatttatgaagac---ac-taatcaaaaatatgggatcagtgtacttcagactctcacaagagaatataatcttagacagacttctctccagtgctccaaatcccacgagaggaacagttttgttaaggggcagtcatttaaaggataactaacaaattatcta--tcaattctaagttatacctttgaataaaattaaaataccaaataaaatatgtatacattgggacaacatcaacataatcctttttataa--------ccactcaaaattgtgtcttaatcttatgccttcaaacctttattgcaaattattataagaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16805328 764 - 229590362 CTCTTGGGGCAATTTGATATACCCCCCAAAGTGGCATAATCACGCCAGCCTACCCGTATG-----ACATTGTATTTATTCACTGCACTGTGAGCTCcagggagtccaggtgatagaataggcaaagggcagattttggagccagacagcctgacatttacatccttccttggctacttctagctctgtgacctttggcaaacctctgaaagcctcagcttcagtttcttaatctgtagaacaggaggaaaaatttcttcctagcaatggtgtggtaaaaaattaaCAACCGTGACAGG--CTGCTCTcccaaaacaatgtcctgtagaaaatgctggctttattgagtaggttcctctgtggcctgtttctgtttggcagcagacttgtggcacctttgcttagggtccttatttttataacaaaatactaactttactttttgtttatagggtttccaaaatttatgaaacc---acttaatcaaaaacatgggatcagtgtcctctggactctcac-aggtaatataatcttaggcagacttctctccagtgttccaaatcccatgagaggaacagttttgttaaggggcagtcatttaaaggatgactcacaaattatctc--tctattctaagttatacctttgaataaaattaaaataccaaataaaatatgtgtacattgggacaagatcagtgttatcctttttataa--------tcattcaaaattgtgtcccaatcttatgccttcaaacctttattgcaaattattataagaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223565792 764 - 227556264 CTCTTGGGGCAATTTGATATACCCCCCAAAGTGGCGTAATCACGCCAGCCTACCCGTATG-----ACATTGTATTTATTCACTGCACTGTGAGCTCcagggagtccaggtgatagaataggcaaagggcagattttggagccagacagcctgacatttacatccttccttggctacttctagctctgtgacctttggcaaacctctgaaagcctcagcttcagtttcttaatctgtagaacaggaggaaaaatttcttcctagcaatggtgtggtaaaaaattaaCAACCGTGACAGG--CTGCTCTCCCAAAACAATGTCCTGTAGAAAATGCTGGCTTTATTGAGTAGGTTCCTCTGTGGCCTGTTTCTGTTTGGCAGCAGACTCGTGGCACCTTTGCTTAGGGTCCTTATTTTTATAACAAAATACTAACTTTACTTTTTGTTTATAGGGTTTCCAAAATTTATGAAACC---ACTTAATCAAAAACATGGGATCAGTGTCCTTTGGACTCTCAC-AGGTAATATAATCTTAGGCAGACTTCTCTCCAGTGTTCCAAATCCCATGAGAGGAACAGTTTTGTTAAGGGGCAGTCATTTAAAGGATGACTCACAAATTATCTC--TCTATTCTAAGTTATACCTTTGAATAAAATTAAAATACCAAATAAAATATGTGTACATTGGGACAAGATCAGTGTTATCCTTTTTATAA--------TCATTCAAAATTGTGTCCCAATCTTATGCCTTCAAACCTTTATTGCAAATTATTATAAgaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16616567 767 - 220367699 CTCTTGGGGCAATCTGATATACCCCCCAAAGTGTCATAATCACGCCAGCCTACCCGTATG-----ACATTGTATTTATTCACTGCACTGTGAGCTCCAGGGAGTCCAGGTGATAGAATAGGCAAAGGGCAGATTTTGGAGCCAGACAGCCTGACATTTACATCCTTCCTTGGCTActtctagctctgtgacctttggCAAACCTCTGAAAGCCTCAGCTTCAGTTTCTTAATCCGTAGAACAGGAGGAAAAATTTCTTCCTAGCAATGGTGTGGTAAAAAATTAACAACCGTGACAGG--CTGCTCTCCCAAAACAGTGTCCTGTAGAAAACGCTGACTTTATTGAGTAGGTTCCTCTGTGGCCTG-TTCTGTTTGGCAGCAGACTCGTGGCACCTTTGCTTAGGGtccttatttttataacaaaatactaactttactttttgtttatagGGTTTCCAAAATTTATGAAATTTGGAATTAATCAAAAACATGGGATCAGTGTCCTTTGGACTCTCACAAGGTAATATAATCTTAGGCAGACTTCTCTCCGGTGTTCCAAATCCCATGAGAGGAACAGTTTTGTTAAGGGGCAGTCATTTAAAGGATGACTCACAAATTATCTC--TCTATTCTAAGTTATAcctttgaataaaattaaaataccaaataaaatatgtgtacatTGGGACAAGATCAGCGTCATCCTTTTTATAA--------TCATTCAAAATTGTGTCCCAATCTTATGCCTTCAAACCTTTATTGCAAATTATTAtaagaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82414579 758 + 85787240 CTCTTGGGGCAATCTGATATACCCCCCAAAGTGTCATAATCACGCCAGCCTACCCGTATG-----ACATTGTATTTATTCACTGCACTGTTAGCTCCAGGGAGTCCAGGTGATAGGATAGGCaaagggcagaatttggagccagacagcctgacatttacgtccttccttggctacttctagctctgtgacctttggcaaa-ctctgaaagcctcggcttcagtttcttaatctgtagaacaggaggaaaaatttcttcctagtaatggtgtggtaaaaaattaaCAACCGTGACAGC--CTGCTCTCCCAAAACAATGTCCTGTAGAAAATCCTGGCTTTATTGAGTAGGTTCCTCTGTGGCCTGTTTCTGTTTGTCAGCAGACTTGCGACACCTTTGCTTAGGGTCCTTATTTTTATCACAAAATACTAAC------TTTTGTTTATATGGTTTCCAAAATTTATGAAACC---ACTTAATCGAAAACATGGGATCAGTGTCCTTTGGACTCTCACAAGGTAATATAATCTTAGGCAGACTTCTCTCCGGTGTTCCAAATCCCATGAGAGGAACAGTTTTGTTAAGGGGCAGTCATTTAAAAGATGACTCACAAATTATCTA--TCTATTCTAAGTTATACCTTTGAATAAAATTAAAATACCAAATAAAATATGTATACATTGGGACAAGATCAGCGTTATCCTTTCTATAG--------TCATTCAAAATTGTGTCCCAATCTTATGCCTTCAAACCTTTATTCCAAATTATTATAAgaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14095990 748 - 49578535 CTCCTGGGGCAATCTGATATACCCCCCAAAGTGTCGTAATCACGTCAGCCTCCCCACGTG-----ACATTCTATTTCTTCACTGCGCTGTGAGCCCCA---------GGTGCtatcataggcgaagggcaaa-tttggagccagacagcctgacatttagatccttccctggctgctttgagctctgtgacctttggcaaacctctgaaagcctcagcttgagtttcttcacctgtagaac-tggggaaaatgttcctcctagcaatggtggtgtaaaaaATCCACACCTATGACAGC--CTGCTCTCccagaacaatgtcctgcagaaaat-ctggcttcactgagtaggcgcctcgg-----ggcttctgtttgacagcaggcttgtgacatctttgtttaaggtcctcatttttataacaaaatattaactttactttttgtttatatggcttctaaaatgtatgaagcc---acttcatcaaaaatatgggatcagggtacttcagactctcacaggaggatataactttagacagccttctctctggtgccccagatcccacaagaggaacagttttgttaaggggcagtcatttagaagatgactaactagttacctg--tgtattctaagttatgcctttgaataaaattaaaatactgaagaagacatgtatacattgggatgacatcaacatcatcctttttatca--------tcactcaaaattgtgtcttagtattatgccttcaagcctttgttgtaaattattataagcaa i calJac3.chr19 C 0 I 278 s canFam3.chr7 36274896 715 + 80974532 CTCTGAGGGCAGCCACATG-AATTGTCAACACATCATAATGACATCACTATATTTATATTATGTCACATCGTTTGTACTCATTACAATGTGGCCCCC--GGAAGCCAGGTGA----------GAAGCACAAAATTTGGAACTTGAAGGCCCGACATTCAGGCTCTTCTGTGGct---------------------------tttctg--agccccagctttggttactgaatctgta-aacagaagaaacagtttctacccagcaggattaatgt-aaaatttaCCAACTATGCCAGG--CTGTCCTcccagacctatgtccagaagaaagccctggccttgt-gggtaggtacatctgtggcttctttctgtgttgtgccagggttgtgacacctttgattaggtgccttatttttagaacaaaaatctaattctacttgttgtttatctggtctccaaaatttatgaggcc---acttaatcaagaatataagatcggggcacttcagactctcataagagagtgtgatctcaaatgttcctctctccagcaccccaaattccagaagaagggaagtctgattaagggtcagtaattaaaaatacaactaacaaattaaccagctatattctgagttatatc-ctgaagaaggtttaa-------------------cacatttggaccaaatcaacctattctttttcataactcaccatccactttgaatggtgtcttgatcttctgccttcaagcattcatcagaaattattataagaaa i canFam3.chr7 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I a score=133338.000000 s hg38.chr1_KI270759v1_alt 90764 61 + 425601 tgctgtctctactaaaagtacaaaaattagccaggagtggtgacaggcgcctgtaatccca s panTro4.chr1 224839638 61 + 228333871 tgctgtctctactaaaagtacaaaaattagccaggagtggtgacaggtgcctgtaatccca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226198091 61 - 229942017 ccttgtctctactaaaagtacaaacattagccgggcgtggtgacaggcgcctgtcatccca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140086546 61 - 143122389 ccctgtctctactaaaagtacaaaaattagccgggcgtggtgacaggcgcctgtaatccca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16806092 61 - 229590362 ccctgtctttactaaaagtacaaaaattagctgggcatggtgacaggcacctgtaatccca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223566556 61 - 227556264 ccctgtctttactaaaagtacaaaaattagctgggcatggtgacaggcacctgtaatccca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16617334 61 - 220367699 ccctgtctttactaaaagtacaaaaattagctgggcatggtgacaggcacctgtaatccca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82415337 61 + 85787240 ccctgtctctactaaaagtacaaaaattagctgggcatggtgacaggcacctgtaatccca i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36275611 12 + 80974532 -------------------------------------------------ctagtattctca i canFam3.chr7 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e calJac3.chr19 14096738 278 - 49578535 I a score=121668.000000 s hg38.chr1_KI270759v1_alt 90825 52 + 425601 gctactcaggaggctgaggcaggagaatcgcttgaacccgggagacagaggt s panTro4.chr1 224839699 52 + 228333871 gctactcaggaggctgaggcaggagaatcgcttgaacccgggagacagaggt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226198152 52 - 229942017 gctactcaggaggctgaggcaggagaatcgcttgaacccgggagacagaggt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140086607 52 - 143122389 gcaactcaggaggctgaggtgggagaatcgttcgaacccaggagacagaggt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16806153 52 - 229590362 gctactcaggaggctgaggcgggagggttgcttgaacctgggaggcagaggc i rheMac3.chr1 C 0 I 42 s macFas5.chr1 223566617 52 - 227556264 gctactcaggaggctgaggcgggagggttgcttgaacctgggaggcagaggc i macFas5.chr1 C 0 I 6 s papAnu2.chr1 16617395 52 - 220367699 gctactcaggaggctgaggcgggagggttgcttgaacctgggaggcagaggc i papAnu2.chr1 C 0 I 6 s chlSab2.chr25 82415398 52 + 85787240 gctactcaggaggctgaggcgggaggattgcttgaacctgggaggcagaggc i chlSab2.chr25 C 0 I 6 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36275623 0 + 80974532 C e calJac3.chr19 14096738 278 - 49578535 I a score=40168.000000 s hg38.chr1_KI270759v1_alt 90877 25 + 425601 tgcagtgagctgagatggcgccact s panTro4.chr1 224839751 25 + 228333871 tgcagtgagctgagatggcgccact i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226198204 25 - 229942017 tgcagtgagccgagatcgcgccact i ponAbe2.chr1 C 0 M 909 s nomLeu3.chr5 140086659 25 - 143122389 tgcagtgaggcgagatcacgccact i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223566675 25 - 227556264 tgcagtgagccgataccgtgccact i macFas5.chr1 I 6 C 0 s papAnu2.chr1 16617453 25 - 220367699 tgcagtgagccgatatcgtgccact i papAnu2.chr1 I 6 C 0 s chlSab2.chr25 82415456 25 + 85787240 tgcagtgagccgatatcgtgccact i chlSab2.chr25 I 6 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36275623 0 + 80974532 C e calJac3.chr19 14096738 278 - 49578535 I e rheMac3.chr1 16806205 42 - 229590362 I a score=8169.000000 s hg38.chr1_KI270759v1_alt 90902 7 + 425601 gcattcc s panTro4.chr1 224839776 7 + 228333871 gcattcc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140086684 7 - 143122389 gcattcc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223566700 7 - 227556264 gctttcc i macFas5.chr1 C 0 I 4 s papAnu2.chr1 16617478 7 - 220367699 gctttcc i papAnu2.chr1 C 0 I 4 s chlSab2.chr25 82415481 7 + 85787240 gctttcc i chlSab2.chr25 C 0 I 4 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36275623 0 + 80974532 C e calJac3.chr19 14096738 278 - 49578535 I e rheMac3.chr1 16806205 42 - 229590362 I e ponAbe2.chr1 226198229 909 - 229942017 M a score=72259.000000 s hg38.chr1_KI270759v1_alt 90909 73 + 425601 tgggcaacgacaacagtgaaactccatc---tcaaaaaaa-aaacaaaaaacaaaaaaaaaaCaacaactatttgac s panTro4.chr1 224839783 74 + 228333871 tgggcaacgacaacagtgaaactccatc---tcaaaaaaacaaaaaaaacaaaaaaaaaaaaCaacaactatttgac i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140086691 61 - 143122389 tgggcaacaacaagagtgaaactccatc---tcaaaaaaa-------------aaaagaaagaaaCAACTATTTGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16806247 58 - 229590362 tgggca---acaagcgtgaaactccgtc----------------aaaaaaaaaaagaaaaagaaacaaCTATTTGAC i rheMac3.chr1 I 42 C 0 s macFas5.chr1 223566711 73 - 227556264 tgggca---acaagcgtgaaactccgtcaaaaaaaaaaaa-aaaaaaaaaaaaaagaaaaaGAAACAACTATTTGAC i macFas5.chr1 I 4 C 0 s papAnu2.chr1 16617489 63 - 220367699 tgggca---acaagtgtgaaactccgtc----------aa-aaaaaaaaaaaaaagaaaaagaaacaacgaTTTGAC i papAnu2.chr1 I 4 C 0 s chlSab2.chr25 82415492 59 + 85787240 tgggca---acaagcgtgaaactccgtc---------------caaaaaaaaaaagaaaaagaaCCAACTATTTGAC i chlSab2.chr25 I 4 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36275623 0 + 80974532 C e calJac3.chr19 14096738 278 - 49578535 I e ponAbe2.chr1 226198229 909 - 229942017 M a score=332794.000000 s hg38.chr1_KI270759v1_alt 90982 157 + 425601 ttttgctttagcgtctgctatgaaccatgaatatagatgccaattatccattacatggttcagttttcctggcttacactgccctacacaagacatctgtccttgacacagggactaaccttgtctctcctaaggaattagtcatttttatcctctt s panTro4.chr1 224839857 157 + 228333871 ttttgctttagcgtctgctatgaaccatgaatatagatgccaattatccattacatggttcagttttcctggcttacactgccctacacaagacatctgtccttgacacagggactaaccttgtctctcctaaggaattagtcatttttatcctctt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140086752 157 - 143122389 TTTTGCTTTAGCGTCTGCTATGAACCGTGAATATAGATGCCAACTATCCATTACATGGTTCAGTTTTCCTGGCCTTCACTGCCCTACACAAGACGTCTGTCCTTGACACAGGGACTAGCCTTGTCTCTCCTAAGGAATTAGTCATTTTTATCCTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16806305 157 - 229590362 TTTTGCTTTAGTGTCTGCTATGAACCGTGAATATAGAGGCCAactatccattacatggctcaattttcctggcttacactgacctacacaagacatctgtccttgacacaaggactaaccttgtctctcctaaggaattaggcattttcatcctctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223566784 157 - 227556264 TTTTGCTTTAGTGTCTGCTATGAACCGTGAATATAGAGGCCAACTATCCATTACATGGCTCAATTTTCCTGGCTTACACTGACCTACACAAGACATCTGTCCTTGACACAGGGACTAACCTTGTCTCTCCTAAGGAATTAGGCATTTTCATCCTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16617552 157 - 220367699 TTTTGCTTTAGTGTCTGCTATGAACCGTGAATATAGAGGCCAACTATCCATTACATGGCTCAATTTTCCTGGCTTATACTGACCTACACAAGACATCTGTCCTTGACACAGGGACTAACCTTGTCTCTCCTAAGGAATTAGGCATTTTCATCCTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82415551 157 + 85787240 TTTTGCTTTAGTGTCTGCTATGAACCATGAATATAGAGGCCAactatccattacgtggctcaattttcctggcttacactgacctacacaagacatctgtccttgacgcagggactaaccttgtctctcctaaggaattaggcattttcatcctctt i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36275623 138 + 80974532 tcttgcttcagcatttgttaagaattttgagtacagatactaactatccattacatggctcaatttccc-----------aacttttacaag------gtctt--acacagcaagtaaccttgtctctgctgaagaattggtctgtttcatcctttt i canFam3.chr7 C 0 I 316 e mm10.chr1 178696080 926 + 195471971 I e calJac3.chr19 14096738 278 - 49578535 I e ponAbe2.chr1 226198229 909 - 229942017 M a score=2566.000000 s hg38.chr1_KI270759v1_alt 91139 3 + 425601 agt s panTro4.chr1 224840014 3 + 228333871 agt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140086909 3 - 143122389 AAG i nomLeu3.chr5 C 0 I 332 s rheMac3.chr1 16806462 3 - 229590362 aat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223566941 3 - 227556264 AAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16617709 3 - 220367699 AAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82415708 2 + 85787240 -at i chlSab2.chr25 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36275761 316 + 80974532 I e calJac3.chr19 14096738 278 - 49578535 I e ponAbe2.chr1 226198229 909 - 229942017 M a score=541053.000000 s hg38.chr1_KI270759v1_alt 91142 335 + 425601 aaggagttgtgaaatacatgatgtttccctatgcacctccgtgccaggaatgttagaatcaagttttgttatcaatcataagaactgtCTAAGATTTTCATTTGACATGCTACATTTCTACT-------CCtttttttttttttttggaaagggtttcactttgttgcccaggctggagtgcagtggcacaatcacagctcactgtagcctctaccaccctaggctcaagcaatcctcacaccacagcctcccgagtagctgggactataggcatgcgccaccacgcccagctaatttttgtattttttgtacagataggagttttgccacactgcccaggc s panTro4.chr1 224840017 328 + 228333871 aaggagctgtgaaatacatgatgtttccctgtgcacctccgtgccaggaatgttagaatcaagttttgttatcaatcataagaactgtCTAAGATTTTCATTTGACATGCTACATTTCTACT-------C-------tttttttttggaaagggtttcgctctgttgcccaggctggagtgcagtggcacaatcacagctcactgtagcctctaccaccctaggctcaagcaatcctcacaccacagcctcccgagtagctgggactataggcatgtgccaccacgcccagctaatttttgtattttttgtagagatgggagttttgccacactgcccaggc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140087244 329 - 143122389 AAGGAGTTGTGAAATACATGATGTTTCCCTATGCACCTCCATGCCAGGAATGTTAGAACCAAGTTTTGTTATCAGTCATAAGAACTGTCTAAGCTTTTCATTTGACATGCTAGATTTCTACt-------t-----tttttttttttgggcagggtcttgctctgttgcccaggctggagtgcagtggcatgatcacagctcactgtagcctctaccaccctaggctcaagcgatcctcacaccacaacctacggagtagctgagactacaggcatgcaccaccacacccagctaatttttgtattttttgtagagat-ggagttttgccacactgcccaggc i nomLeu3.chr5 I 332 C 0 s rheMac3.chr1 16806465 336 - 229590362 aaggagttgtgaaatgcctgatgtttcccta-gcacctccgtgagaggaatgttagagtcaagttttgttttcagtcgtaagaactgtctaagcttttCGTTTGACATGCTAGATTCCTACC----ttttttttttttttttttttggacagggtctcgctctgttgcccaggctggagtgtggtggcacgatcatagctcactgtaggctctaccaccctaggctccagtgatcctcccaccacagcctcccgagtagctgggactacaggcatgcgccaccatgccatgctcatttgtgtattttttggagagat-ggagttttgccatgttgcccaagc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223566944 340 - 227556264 AAGGAGTTGTGAAATGCCTGATGTTTCCCTA-GCACCTCCGTGAGAGGAATGTTAGAATCAAGTTTTGTTTTCAGTCGTAAGAACTGTCTAAGCTTTTCGTTTGACATGCTAGATTCCTACCttttttttttttttttttttttttggacagggtctcgctctgttgcccaggctggagtgtggtggcacgatcatagctcactgtaggctttaccaccctaggctccagtgatcctcccaccacagcctcccgagtagctgggactacaggcatgcgccaccatgccaggctaatttgtgtattttttggagagat-ggagttttgccatgttgcccaagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16617712 328 - 220367699 AAGGAGTTGTGAAATGCCTGATGTTTCCCTA-GCACCTCTGTGAGAGGAATGTTAGAATCAAGTTTTGTTTTCAGTCATAAGAACTGTCTAAGCTTTTCGTTTGACATGCTAGAttcctacc------------ctttttttttttggacagggtctcgctctgttgcccaggctggagtgtggtggcacgagcaTAGCTCACTGTAGGCTCTACCAccctaggctccagtgatcctcccaccacagcctcccgagtagctgggactacaggcatgcgccaccatgtcaggctaatttgtgtattttttggagagat-ggagttttgccatgttgcccaagc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82415710 337 + 85787240 aaggagttgtgaaatgcctgatgtttcccta-gcacctccgtgcgaggaatgttagaatcaagttttgttatcagtcgtaagaactgtctaagcttttCGTTTGACATGCTAGATTCCTACT---Ctttttttttttttttttttggaacagggtctcgctctgttgcccaggctggagtgtgatggcacgatcacagctcactgtaggctctaccaccctaggctccagcgatcctcccaccacagcctcctgagtagctcggactataggcatgcgccaccgtaccaggctaatttttgtatttttttgagagat-ggggttttgccatgttgcccaagc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36275761 316 + 80974532 I e calJac3.chr19 14096738 278 - 49578535 I e ponAbe2.chr1 226198229 909 - 229942017 M a score=2548.000000 s hg38.chr1_KI270759v1_alt 91477 1 + 425601 t s panTro4.chr1 224840345 1 + 228333871 t i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140087573 1 - 143122389 t i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16806801 1 - 229590362 t i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223567284 1 - 227556264 t i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16618040 1 - 220367699 t i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82416047 1 + 85787240 t i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14097016 1 - 49578535 T i calJac3.chr19 I 278 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36275761 316 + 80974532 I e ponAbe2.chr1 226198229 909 - 229942017 M a score=137621.000000 s hg38.chr1_KI270759v1_alt 91478 74 + 425601 ggtAGATTTCTCCTCTTGATCCTGTTTTCCACATGTTCAt-------------------------ttttttttttctttttttgagacagagtttcact s panTro4.chr1 224840346 73 + 228333871 ggtAGATTTCTCCTCTTGATCCTGTTTTCCACATGTTCA--------------------------ttttttttttctttttttgagacagagtttcact i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140087574 72 - 143122389 ggtAGATTTCTCCTCTTGATCCTGTTTTCCACATGTTCA---------------------------tttttttttctttttttgagatggagtttcact i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16806802 99 - 229590362 ggtAGATTTATCCTCTTGATCCTGTTTTCTACATGTTTGTGTTTTTTTTGTTGttgttgttgtttttttttttttttttttttgagatggaatttcact i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223567285 75 - 227556264 ggtAGATTTATCCTCTTGATCCTGTTTTCTACATGTTTGTG------------------------TGttttttttttttttttgagatggaatttcact i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16618041 74 - 220367699 ggtagATTTATCCTCTTGATCCTGTTTTCTACAtgttcgtg-------------------------tttttttttttttttttgagatggaatttcact i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82416048 85 + 85787240 ggtAGATTTATCCTCTTGATCCTGTTTTCTACATGTTCGTG--------------Gtttttttttttgtttgttttgttttttgagatggaatttcact i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14097017 55 - 49578535 GCTAGATTTCTCCTCtt-------tttt-------------------------------------ttttttttttttttttttttgacagagtctcact i calJac3.chr19 C 0 C 0 s canFam3.chr7 36276077 91 + 80974532 GTTAGGTCTCTCCTCTCTACCCTGTTTTCCATGTGATCATTTCTATCTTACTAATTT--------TATTGTATTTtcttttttaaaaaaaatatttatt i canFam3.chr7 I 316 I 297 e mm10.chr1 178696080 926 + 195471971 I e ponAbe2.chr1 226198229 909 - 229942017 M a score=427424.000000 s hg38.chr1_KI270759v1_alt 91552 195 + 425601 cttattgcccaggctggggtgcaatggcatgatcccagtttaccgcatcctccact-tcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcatgcaccaccacacccagctaatttttgtattattagtagaaatggtgtttcaccatgttggtcaggctggtatcgaactccc s panTro4.chr1 224840419 195 + 228333871 cttattgcccaggttggggtgcaatggcacgatcccagttcaccatatcctccgcc-tcctgggttcaaacaattctcctgcctcagcctcccaagtagctgggattacaggcatgcaccaccacacccagctaatttttgtattattagtagaaatggtgtttcaccatgttggtcaggctggtatcgaactccc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140087646 195 - 143122389 cttactgcccaggctggagtgcaatggcatgatcccagttcatcacatcctctgcc-tcctgggttcaagcagttctcctgcctcagcctcccaagtagctgggattacaggcatgcgccaccacacccagctaatttttgtattattagtagagatggggtttcaccatggtggtcaggctggtatcgaactccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16806901 195 - 229590362 cttcttgcccaggctggagtgcaatggcatcatcccagctcactgcatcctccacc-tcccgggttcaagcagttctcctgcctcagcctcccaagtagctgggattacaggcatgcaccaccacacccagctaattttcgtattattagtagacatggggtttcaccatgttggtcaggctggtgtcgaactccc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223567360 195 - 227556264 cttattgcccaggctggagtgcaatggcatcatcccagctcactgcatcctccacc-tcccgggttcaagcagttctcctgcctcagcctcccaagtagctgggattacaggcatgcaccaccacacccagctaattttcgtattattagtagacatggggtttcaccatgttggtcaggctggtgtcgaactccc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16618115 195 - 220367699 cttattgcccaggctggagtgcaatggcatcatcccagctcactgcatcctccacc-tcctgggttcaagcagttctcctgcctcagcctcccaagtagctgggattacaggcatgcaccaccacacccagctaattttcgtattattagtagagatggggtttcaccatgttggtcaggctggtgtcgaactccc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82416133 195 + 85787240 cttattgcccaggctggagtgcaatggcatcatcccagttcactgcatcctccgcc-tcctgggttcaagcaattctcctgcctcaacctcccaagtagctgggattacaggcatgcaccaccacacccagctaattttcgtattgttagtagagatggggtttcaccatgttggtcaggctggtgtcgaactccc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14097072 185 - 49578535 c-tgttgcccaggctggagtgcagtggcatgatcaaggctcacttcatcctctaccaccctaggctcaactgatcctcccacggcagtttctcaagtagctgggactacaggcatgcaccgccacacctggctggtttttgtattttttgtagagatggagttttgccacgttgcctaggctggCA---------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36276168 297 + 80974532 I e ponAbe2.chr1 226198229 909 - 229942017 M a score=281476.000000 s hg38.chr1_KI270759v1_alt 91747 117 + 425601 gacctcaggtgatccaccctcctccgcctcccaaagtgctgggattacaggcatgatccactgcgcctggccCACATGTTCATTTCTAGCTTGTTAACTTTATTGTATTTACCATAC s panTro4.chr1 224840614 117 + 228333871 gacctcaggagatccaccctcctccgcctcccaaagtgctgggattacaggcatgatccactgcgcctggccCACATGTTCATTTCTAGCTTGTTAACTTTATTGTATGTACCACAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226199138 117 - 229942017 gacctcaggtgatccaccctcctcggcctcccaaagtgctgggattacaggcatgaaccactgcgctcggcCCACATGTTCATTTCTAGCTTATTAACTTTATTGTATTTATCACAC i ponAbe2.chr1 M 909 C 0 s nomLeu3.chr5 140087841 112 - 143122389 aacctcaggtgatccacccttcttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagccCACATGTCCATTTGTAGCTTATTAACTTTATT-----TACCACAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16807096 117 - 229590362 gacctcaggtattccaccctcttcggcctcccaaagtgctgggattacaggcgtgaaccacggcgccccgccCACATGTTCATTTCTAGCTTATTAACTTTATTGTATTTATCACAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223567555 117 - 227556264 gacctcaggtattccaccctcttcggcctcccaaagtgctgggattacaggcgtgaaccacggcgcccagccCACATGTTCATTTCTAGCTTATTAACTTTATTGTATTTATCACAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16618310 117 - 220367699 gacctcaggtgatccaccctcttcggcctcccaaagtgctgggattacaggtgtgaaccacggcGCCCAGCCCACATGTTCATTTCTAGCttattaactttattgtatttatcacac i papAnu2.chr1 C 0 I 348 s chlSab2.chr25 82416328 117 + 85787240 gacctcaggtgatccaccctccttggcctcccaaagtgctgggattacaggcgtgaaccaccgcacccagccCACATGTTCATTTCTAGCTTATTAACTTTATTGTCTTTATCACAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14097257 70 - 49578535 GACTTC------TCCTCTCAATCCTGTTT-----------------------------------------TCCTCATGTTCCTTTCTAGCTTATTAACCTTATTGTATTTATCACAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36276168 297 + 80974532 I a score=71604.000000 s hg38.chr1_KI270759v1_alt 91864 23 + 425601 TCTCCCACTTTTTAAACTACAGA s panTro4.chr1 224840731 23 + 228333871 TCTCCCACTTTTTAAACTACAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226199255 23 - 229942017 TCTCCCACTTTTTAAACTACAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140087953 22 - 143122389 TCTCCCACTTTTTAAACTA-AGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16807213 23 - 229590362 TCTCCCACTTTTTAAACTACAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223567672 23 - 227556264 TCTCCCACTTTTTAAACTACAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16618775 23 - 220367699 tctcccaCTTTTTAAACTACAGA i papAnu2.chr1 I 348 C 0 s chlSab2.chr25 82416445 23 + 85787240 TCTCCCACTTTTTAAACTACAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14097327 23 - 49578535 TCTCCCATTTTTTAAACTACAAA i calJac3.chr19 C 0 C 0 e mm10.chr1 178696080 926 + 195471971 I e canFam3.chr7 36276168 297 + 80974532 I a score=742756.000000 s hg38.chr1_KI270759v1_alt 91887 247 + 425601 TTCCTTGTAGAAAaa------tgaataaatgaatgaat---------------gagtgaaggaaAGTCAGTGGCAATAACTAATGATGTTTTTAaaattgtgtagtaagtggcatagttatgagatttgggggatttggggctggatcagacagagaaaacagaaggggaacatgccagtgtcttcaaatgtttgagacactgtagtttggaagagacagcggacatgatttttattgctcctgagaatagaataggagccaa------------------------------------------------------------------------------------tgaat s panTro4.chr1 224840754 247 + 228333871 TTCCTTGTAGAAAAA------TGAATAAATGAATGAAC---------------GAGTGAAGGAAAGTCAGTGGCAATAACTAATGATGTTTTTAaaattgtgtagtaagtggcatagttatgagatttgggggatttggggctagatcagacagagaaaacagaaggggaacatgccagtgtcttcaaatgtttgagacactgtagtttggaagagacagtggacatgatttttattgctcctgagaatagaataggagccaa------------------------------------------------------------------------------------tgaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226199278 243 - 229942017 TTCCTTGTAGAAAaa------tgaataaatgaatgaat---------------gagtgaaggaaAGTCAGTGGCAATAACTAATGACGTTTTTAaaattgtgtagtaagtggcatagttatgagatttgagggatttggagctggat----cagggaaaacagaaggggaacatgccagtgccttcaaatgtttgagatactgtagtttggaagagacagcggacatgatttttattgctcctgagaatagaatgggagccaa------------------------------------------------------------------------------------tgaat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140087975 237 - 143122389 TTCCATGTAGAAAAA------TGAATAAATGAAT-------------------AAGTGAAGG--AGTTAGTGGCAATAACTAATGATGTTTTTAaaattgtgtagtaagtggcatagttatgagatttgggggatttggggctggat----cagggaaaacagaaggggaacatgccagtgtcttcaaatgtttgagatactgtagtttggaagagacaggggacatgatttttattgctcctgagagtagaataggagccag------------------------------------------------------------------------------------tgaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16807236 252 - 229590362 TTCCTTGTAGAAAaa------tgaataaatgaatgaat-----gattgtgaaagagtgaaggaaAGTCAGTGGCAGTAACTAATGATGTttttaaaattgtgtagtaagtggcatagttataaga-ttgggggacttgggactggat----cagagaaaacagaaggggaacatgccagtgtcttcaaatatttgagatactatagtttagaagagacagcggacatgatttttattgctcctgagaatagaataggagccaa------------------------------------------------------------------------------------tgaat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223567695 252 - 227556264 TTCCTTGTAGAAAaa------tgaataaatgaatgaat-----gattgtgaaagagtgaaggaaAGTCAGTGGCAGTAACTAATGATGTttttaaaattgtgtagtaagtggcatagttataaga-ttgggggacttgggactgggt----cagagaaaacagaaggggaacatgccagtgtcttcaaatatttgagatactatagtttagaagagacagcagacatgatttttattgctcctgagaatagaataggagccaa------------------------------------------------------------------------------------tgaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16618798 252 - 220367699 TTCCttgtagaaaaa------tgaataaatgaatgaat-----gattgtgAATGAGTGAAGGAAAGTCAGTGGCAGTAActaatgatgtttttaaaattgtgtagtaAGTGGCATAGTTATAAGA-TTGGGGGACTTGGGACTGGAT----CAGAGAAAACAGAAGGGGAACATGCCagtgtcttcaaatatttgagaTACTATAGTTTAGAAGAGACAGCGGACATGATTTTTATTGCTCCTGAGAATAGAATAGGAGCCAA------------------------------------------------------------------------------------TGAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82416468 252 + 85787240 TTCCTTGTAGAAAaa------tgaataaatgaatgaat-----gattgtgaatgagtgaaggaaAGTCAGTGGCAGTAACTAATGATGTTTTTAAAATTGTGTAGTAAGTGGCATAGTTATGAGA-TTGGGGGACTTGGGACTGCAT----CAGAGAAAACAGagggggaacatgccagtgtcttcaaatatttgagatactgcagtttagaagagacagcggacatgatttttattgctcctgagaatagaataggagccaa------------------------------------------------------------------------------------tgAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14097350 257 - 49578535 TTCCTTTTAGAAAAAaatgagtaaataaatgaactaat-----gattgtgaatgagtgaaggaaAGTCAGTGGCAATAACTAATCATGTTTTTAAAATTGTGTAATAAATGGCATAGTTATGAGATTTAGGGGATTAGGGGCTGGGT----CAGAGAAAACAGAAGGGGAGCATGCAAGTGTCTT-AAATGTTTGAGATGATGCAGTTTGGAAGACACGGTGGACATGATTTATATTTCTCCTGAGAATAGAGTAGGAGCCAA------------------------------------------------------------------------------------TG-AC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36276465 278 + 80974532 CTTTTTGGAAATGAA------TGAATGAATGAGTGAGCAAGTGAattatgaatgagtaaaggaaggtcagt-------------------------------------------------------------gatttggagctggat----gagagaaga---aaggagaacatgaaggtgtcttcaaacacttgaaatgctatgttttggaagacacagtggttatggctttaattgctcctggggatagaataagaaccaagatgtaggggcgcctgggtggctcagttggttaggcatctgcctttggctcaggccatgatctcagggtcctaggattgattcctgagt i canFam3.chr7 I 297 I 131 e mm10.chr1 178696080 926 + 195471971 I a score=1276518.000000 s hg38.chr1_KI270759v1_alt 92134 385 + 425601 agaCTATCCATTAATTGATTTGTTCATTTCTAAGTTATTTCTTATGCACCTGCTCTCT-AGGGCATGTGGACGAGGTCCAGATGAGGACAAGTTTCCTGCTCTCAAATTTCTTGCATTTTagggaagtaatttttggctgact-tgcaa-agaactttctaatgagaagagttatataaccatgggatgtgttgccttgtgaagtagggagctttccatctttggagaatctcaaaaag-ggctgaatgaat----accctgaaaaatactactccctcgggagagaaggtggatttgttgacctctagggtTTGG-CTCTACTGTGCTTCCATGTTTCTCTTTTATTTGTCAGTTTCCATCTT-AAACTGAAGGATTAGGTCATTT-------------------------------------------------------------------CAGGGAGT s panTro4.chr1 224841001 385 + 228333871 agaCTATCCATTAATTGATTTGTTCATTTCTAAGTTATTTCTTATGCACCTGCTCTCT-AGGGCATGTGGACGAGGTCCAGATGAGGACAAGTTTCCTGCTCTCAAATTTCTTGCATTTTagggaagtaatttttggctgact-tgcaa-agaactttctaatgagaagagttgtataaccatgggatgtgttgccttgtgaagtagggagctttccatctttggagaatctcaaaaag-ggctgaatgaat----accctgaaaaatactactccctcgggagagaaggtggatttgttgacctctagggtTTGG-CTCTGCTCTGCTTCCATGTTTCTCTTTTATTTGTAGGTTTCCATCTT-AAACTGAAGGATTAGGTTGTTT-------------------------------------------------------------------CAGGGAGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226199521 386 - 229942017 agaCTATCCATTAATTGATTTGTTCATTTACAAGTTATTTCTTATGCACCTGCTCTCTAAGGGCATGTGGACGAGGTCCAGATGAGGACAAGTTTCCTGCTCTCAAATTTCTTGCATTTTagggaagtaatttttggctgact-tgcaa-agaactttctaatgagaagagttaaataaccatgggatgtattgccttgtgaagtagggagctttccatctttggagaatctcaaaaag-agctgaatgaat----accctgaaaaatactcctccctcgggagagaaggtgtatttgttgacctctagggtTTGG-CTCTGCTCTGCTTCCATGTTTCTCTTTTATTTGTAGGTTTCCATCTT-AAACCGAAGGATTAGGTTGTTT-------------------------------------------------------------------CAGGGAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140088212 386 - 143122389 agaCTATCCATTAATTGATTTGTTCATTTCCAAGTTATTTCTTATGCACCTGCTCTTTAAGGGCATGTGGACAAGGTCCAGATGAGGACAAGTTTCCTGTTCTCAAATTTCTTGCACTTTagggaagtaatttttggctgact-tgcaa-agaactttctaatgaaaagagttaaataaccacgggatgtgttgccttgtgaagtagggagctttccatctttggaggatctcaaaaag-ggctgaatgaat----accctgaaaaatactcctccctcgggagggaaggtggatttgttgacttctagggtTTGG-CTCTGCTCTGCTTCCATGTCTCTCTTTTATTTGTAGGTTTCCATCTT-AAACTGAAGGATTACGTTGTTT-------------------------------------------------------------------CAGGGAGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16807488 386 - 229590362 agaCTGTCCGTTAATTGATTTGTTCATTTCCAAGTTATTTCTTATGCACCTGCTCTCTAAGGACATGTGGACGAGGTCCAGATGAGGACAAGTTTCCTGCTCTCAAATTTCTTGCAttttagggaagtgatttttggctgact-cacaa-agaactttctaatgagaagagttaaataaccatgggatgtgttgccttgtgaagtagggagctttccctctttggaggatctgaaaaag-ggctgaatgaat----accctgaaaaacactcctccctcgggagagaaggtggatttgttgacctcaagggtTTGG-CTCTGCTCTGCTTCCATGTTTGTCTTTTATTTGTAGGTTTCCATCTT-AAACTGAAGGATTAGGTTGTTT-------------------------------------------------------------------CAGGGAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223567947 386 - 227556264 agaCTGTCCGTTAATTGATTTGTTCATTTCCAAGTTATTTCTTATGCACCTGCTCTCTAAGGACATGTGGACAAGGTCCAGATGAGGACAAGTTTCCTGCTCTCAAATTTCTTGCAttttagggaagtgatttttggctgact-cacaa-agaactttctaatgagaagagttaaataaccatgggatgtgttgccttgtgaagtagggagctttccctctttggaggatctgaaaaag-ggctgaatgaat----accctgaaaaacactcctccctcgggagagaaggtggatttgttgacctcaagggtTTGG-CTCTGCTCTGCTTCCATGTTTGTCTTTTATTTGTAGGTTTCCATCTT-AAACTGAAGGATTAGGTTGTTT-------------------------------------------------------------------CAGGGAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16619050 386 - 220367699 AGACTGTCCGTTAATTGATTTGTTCATTTCCAAGTTATTTCTTATGCACCTGCTCTCTAAGGACATGTGGACGAGGTCCAGATGAGGACAAGTTTCCTGCTCTCAAATTTCTTGCATTTTAGGGAAGTGATTTTTGGCTGACT-CGCAA-AGAACTTTCTAATGAGAAGAGTTAAATAACCACGGGATGTGTTGCCTTGTGAAGCAGGGAGCTTTCCCTCTTTGGAGGATCTGAAAAAG-GGCTGAATGAAT----ACCCTGAAAAACACTCCTCCCTCAGGAAAGAAGGTGGATTTGTTGACCTCAAGGGTTTGG-CTCTGCTCTGCTTCcatgtttgtcttttatttgtaGGTTTCCATCTT-AAACTGAAGGATTAGGTTGTTT-------------------------------------------------------------------CAGGGAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82416720 386 + 85787240 AGACTGTCCATTAATTGATTTGTTCATTTCCAAGTTATTTCTTATGCACCTGCTCTCTAAGGGCATGTGGACGAGGTCCAGATGAGGACAAGTTTCCTGCTCTCAAATTTCTTGCATTTTagggaagtgatttttggctgact-cgcaa-agaactttctaatgagaagagttaaataaccatgggatgtgttgccttgtgaagtagggagctttccctctttggaggatctgaaaaag-ggctgaatgaat----accctgaaaaacactcctccctcgggagagaaggtggatttgttgacctcaagggtTTGG-CTCTGCTTTGCTTCCATGTTTCTCTTTTATTTGTAGGTTTCCGTCTT-AAACTGAAGGATTAGGTTGTTT-------------------------------------------------------------------CAGGGAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14097607 380 - 49578535 AGACTATCCATTAAATGACTTGTTTATTTCCAAGTTATTTCTTATGCACCTGCTCTCTAAGGGCATGTGGACCAGATCCAGATGAGGACAAGTTTCCTGCTCTCAAATTCCTTGC-ttttagggaagtcgtttttggctgact-tgcaa-agaactttctaatgatcagagttaaagaaacctgggacatgttgccttgtgaagtcaggagcttctcatctttggaagatctcaaaaag-agctgagtgactgaggacccggaaaaacactcctgcctcaggagacaaggtggatttgttgatgtctaaggtttgg-ctctgctctgtttccatgtttctCTTTTATTTGGAGGTTTCCATCTTGAAACTGAAGGATT-----------------------------------------------------------------------------AGGGAGT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36276874 447 + 80974532 agactGTCCATTAGCGGTCTTGAACATTCCCAAGCTATTTCTCATGTGCCTGCTTTCC-GTGCTCTATAGAAGAGGCTCAT-TAAAGACCAGTTCCCTATTCTCCAGTT-CTTCCAttttaggcaaacag-atccagctgactgcacaagagaactct--------aagagttatccaatcatgggatggactgctttgcaaagtagggagcttcctgtctctggaggatcccaagaagtggctaaatgaca-aggaccctgaaaagtact-ctgcatcaggagagagggtgtatttgttgacgtctaagtcttggcccctgctgtgctttcatgattGTCAGTTATTTGGAGGTTTTGGTGCT-AAACTGAATGATTAGGTGTTTTGGGTGGTTTttttttttaaagaatttttttacatttatttgagagagaggacagagagcactaacagtggggagt i canFam3.chr7 I 131 I 113 e mm10.chr1 178696080 926 + 195471971 I a score=2786993.000000 s hg38.chr1_KI270759v1_alt 92519 917 + 425601 TCTGGAGGTGAGGT-GGTGGGAAGCAATAAAAATACCTTCACAAACCAGTTCCTTTACTCTTTGATCCAGGTGGTTCCCACAGGTCCCTTGACCCCCGATAAAGTAATCCCGG--CTGCCTGCGACGGAGGTGTAGGC-AGCCAGGGTT-CATGGAGCCTGTGGTTATCTCCTTACAGAGAGCCTTATCAGCTTGTGGAGCCACCGTAAAGCTTGCTTTGACCTTTGGCAGAGACTCCTCCTGTATGTCTGTCCACAGAAATGAGAGCAGGTGACAGACACCTGGGATGATCCTGAGACCCAGCACCCAAAGCCCAGGCTTCTTTCTATG-------GGGAAGTCAAGCAGAGGGACCCAAGCTCATAGCCAGTGGAGGGGTGGGTTGATGAGAGGCGAGCCCTTTACCAGATGTGAGCCCAGTCATCACTCTGCATTTTCTACGCAAAAGTCCAGGGGCTTGCTATTGAAATTAGGCAAAGAGGACAAAGAATTGCCCTCTGTAAAGTCCTCA---AAAAATTATAAATTATAATTTTT-ATAAAATGATAGAATTCTAAAATAAAATTTTTATAAAATTATAAAT------TTTATATATATATAATTTCCTGGAAATAact-----tacagaaaagttgcaagaataaaaatagtacaaaggacacccttattcactgtactccg-ttagcaatta------actattttttctggaccatttgtgagtaagatgcgtataccattagcctttatcctgaagctcttcgatgcatatttcctgggaaatgagatatgctgtcacgtagccagagtacacttatcagcttcagtaaaattaacattgatgagtacccttatggaatctatcatgcatgttccaatttgttttcagttgacctgataatgtcctttacagcattgtctc---cctccagtgaggggtccagtc s panTro4.chr1 224841386 919 + 228333871 TCTGGGGGTGAGGT-GGGGGGAAGCAATAAAAATACCTTCACAAACCAGTTCCTTTACTCTTTGATCCAGGTGGTTCCCACAGGTCCCTTGACCCCCGATAAAGTAATCCCGG--CTGCCTGCGACGGAGGTGTAGGC-AGCCAGGGTT-CATGGAGCCTGTGGTTATCTCCTTACGGAGAGCCTTATCAGCTTGTGGAGCCACCGTAAAGCTTGCTTTGACCTTTGGCAGAGACTCCTCCTGTATGTCTGTCCACAGAAATGAGAGCAGGTGACAGACACCTGGGATGATGCTGAGACTCAGCACCCAAAGCCCAGGCTTCTTTCTATG-------GGGAAGTCAAGCAGAGGGACCCAAGCTCATAGCCAGTGGAGGGGTGGGTTGATGAGAGGCAAGCCCTTTACCAGATGTGAGCCCAGTCATCACTCTGCATTTTCTACGCAAAAGTCCAGGGGCTTGCTATTGAAATTAGGCAAAGAAGACAAAGAATTGCCGTCTGTAAAGTCCTCa---aaaaattataaattataattttt-ataaaatgatagaattctaaaataaaatttttataaaattataaat----tatatatatatatataatttCCTGGAAATAact-----tacagaaaagttgcaagaataaaaatagtacagaggacacccttattcactgtactcCG-TTAGCAATTA------ACTAttttttctggaccatctgtgagtaagatgcatataccattagcgtttatcctgaagctcttcgatgtgtatttcctgggaaatgagatatgctgtcatgtagccacagtacacttatcagcttcagtaaaattaacattgatgagtacctttatggcatctatcatgcatgttccaatttgttttcagttgacctgataatgtcctttacagcattgtctc---cctccagtgaggggtccagtc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226199907 927 - 229942017 TCTGGGGGTGAGGTGGGGGGGAAGCAATAAAAATACCTTCACAAACCAGTTCCTTTACTCTTTGATCCAGGTGGTTCCCACAGGTCCCTTGACCCCCGATAAAGTAATCCCGG--CTGCCTGCGATGGAGGTGTAGCC-AGCCAGGGTT-CATGGAGCCTGTGGTTATCTCCTTATGGAGAGCCTTATCAGCTTGCGGAGCCACCGTAAAGTTTGCTTTGACCTTTGGCAGAGACTCCTCCTGTATGTCTGTCCACAGAAATGAGAGCAGGAGACAGACACCTGGGATAATCCTGAGACCCAGCACCCAAAGCCCAGGCTTCTTTCTATGTCTTGTTTCTAAGTCAAGCAGAGGGACCCAAGCTCATAGCCAGTGGAAGGGTGGGTTGATGAGAGGCGAGCCCTTTACCAGATGTGAGCCCAGTCATCACTCTGCATTTTCTATGCCAAAGTTCAGGGGCTTGCTGTTGAAATTAGGCAGAGAGGACAAAGAATTGCCCTCTGTAAAGTCCTCa---aaaaattataaattatattctttaataaaattatagaatttttaaataaaaattttataaaattataaat------tatatatatataaaatttCCTGGAAATAact-----tacagaaaagttgcaagaataaaaatagtacaaagggcacccttattcactgtactcag-ttAACGATTA------ACTAttttttctggaccgtttgtgagtaagatgcatataccattagcctttatcctgaagctcttcaatgcatatttcctaggaaatgagatattctgtcgtgtagccagagtgcacttatcagcttcagtaaaattaacattgatgaatacctttatggaatctatcatgcatgttccaatttgttttcagttgacctgataatgtcctttacagcattgtttct--tttccagtgaggggtccagtc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140088598 929 - 143122389 TCTGGGGGTGAGGT-GGGGGGAAGCAATAAAAATACCTTCACAAA-CGGTTCCTTTACTCTTTGATCCAGGTGGTTCCCACAGGTCCCTTGACCCCCGATAAAGTAATCCCGG--CTGCCTGCGACGGAGGTGTAGGC-AGCCAGGGTT-CATGGAACCTGTGGTTATCTCCTTACAGAGAGCCTTATCAGCTTGCGGAGCCACCGTAAAGCTTGCTTTGACCTTTGGCAGAGACTCCTCCTGTATGTCTGTCCACAGAAATGAGAGCAGGAGACAGACACCTGGGATGATCCTGAGACCCAGCACTCAAAGCCCAGGCTTCTTTCTATGTCTTGTTTCTAAGTCAAGCAGAGGGACCCAAGCTCATAGCCAGTGGAGGGGTGAGTTGATGAGAGGCGAGCCCTTTACCAGATGTGAGCCCAGTCATCACTCTGCGTTTTCTATGCCAAAGTCCAGGGGCTTGCTATTGAAATTAGGCAAAGAGGACAAAGAATTGCCCTCCGTAAAGTCCTCA---AAAAATTATAAATTGTAATTTTT-ATAAAATTATAGAATTTTAAAATAAAATTTTTATAAAATTATAAATTTTATATATATATATATATAATTTCCTGGAAATAact-----tacagaaaagttgcaagaataaaaatagtaccagggacacccttattcactgtactcag-TTAGCGATTA------ACTAttctttctggaccatttgtgagtaagatgcatataccatgagcctttatccttaagctcttcaatgcatatttcctaggaaatgagatattctgtcgtgtaaccagagtacacttatcagcttcagtaaaattaacattgatgaatacctttatggaatctatcatgtatgttccaatttgttttcagttgacctgataatgtcctttatagcattgtctc---cctccagtgaggggtccagtc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16807874 889 - 229590362 TCTGGGGGTGAGGT-GGGGGAAAGCAATAAAAATACCTTCACAAACCAGTTCCTTTACTCTTTGATCCAGGTGGTTCCCACGGGTCCCTTGACCCCCGATAAAGTAATCCCGG--CTGCCTGCGAGGGAGGTGGAGGC-AGCCGGGGTT-CGTGGAGCCTGTGGTTATCTCCTTACCGAGAGCCTTATCAGCTTGCAGAGCCACCGTAAAGCTTGCTTTGACCTTTGGCAGAGACTCCACCTGTATCTCTGTCCACACACATGAGAGCAGGAGGCAGACACCTGGGATGATCCTGAGACCCAACACCCAAAGCCCAGGCTTCTTTCTATG-------GGGGAGTCAAGCAGAGGGACCCAAGCTCATAGCCAGTGGAAGTGTGGGTTGATGAGAGGCGAGCCCTTTACCAGATGTGAGCCCAGTCATCACTCTGCATTTTCTAGGCCAAAGTCCAGGGGCTCGCTGTTGAAAT------------------------------TAAAGTCCTC----aaaaattataaattataattttt-ataaagttatagaatttttaaatgaaatttttataaaattataaat----tatatatctatattaaatttCCTGGAAATAact-----tacagaaaagttgcaagaataaaaacagtacaaaggacacccttattcactgcactcag-ttaacgatta------actattttttctggaccatttgtgagtaagatgcatataccataagcctttatccttaagttcttcaatgcatatttcctaagaaatgagatattgtgttgtgtagccagagtacacttatcagcttcagtaaaattaacattgatgaatacctttatgtaatctatcatgcatgttccaatttgttttcagttgacctgataatgtcctttatagcattgtttcc--cctccagtgaggggtccagtc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223568333 889 - 227556264 TCTGGGGGTGAGGT-GGGGGAAAGCAATAAAAATACCTTCACAAACCAGTTCCTTTACTCTTTGATCCAGGTGGTTCCCACGGGTCCCTTGACCCCCGATAAAGTAATCCCAG--CTGCCTGCGAGGGAGGTGGAGGC-AGCTGGGGTT-CTTGGAGCCTGTGGTTATCTCCTTACCGAGAGCCTTATCAGCTTGCAGAGCCACCGTCAAGCTTGCTTTGACCTTTGGCAGAGACTCCACCTGTATCTCTGTCCACACACATGAGAGCAGGAGGCAGACACCTGGGATGATCCTGAGACCCAACACCCAAAGCCCAGGCTTCTTTCTATG-------GGGGAGTCAAGCAGAGGGACCCAAGCTCATAGCCAGTGGAAGGGTGGGTTGATGAGAGGCGAGCCCTTTACCAGATGTGAGCCCAGTCATCACTCTGCATTTTCTAGGCCAAAGTCCAGGGGCTCGCTGTTGAAAT------------------------------TAAAGTCCTC----AAAAATTATAAATTATAATTTTT-ATAAAGTTATAGAATTTTTAAATGAAATTTTTATAAAATTATAAAT----TATATATCTATATTAAATTTCCTGGAAATAact-----tacagaaaagttgcaagaataaaaacagtacaaaggacacccttattcactgcactcag-TTAACGATTA------ACTAttttttctggaccatttgtgagtaagatgcatataccataagcctttatccttaagttcttcaatgcatattacctaggaaatgagatattgtgttgtgtagccagagtacacttatcagcttcagtaaaattaacattgatgaatacctttatgtaatctatcatgcatgttccaatttgttttcagttgacctgataatgtcctttatagcattgtttcc--cctccagtgaggggtccagtc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16619436 889 - 220367699 tctgggggtgaggt-gggggaaagcaataaaaataccttcacaaacCAGTTCCTTTACTCTTTGATCCAGGTGGTTCCCACAGGTCCCTTGACCCCCGATAAAGTAATCCCGG--CTGCCTGcgagggaggtggaggc-agccaGGGTT-CGTGGAGCCTGTGGTTATCTCCTTACCGAGAGCCTTATCAGCTTGCAGAGCCACCGTAAAGCTCGCTTTGACCTTTGGCAGAGACTCCACCTGTATCTCTGTCCACACACATGAGAGCAGGAGACAGATACCTGGGATGATCCTGAGACCCAGCACCCAAAGCCCAGGCTTCTTTCTATG-------GGGGAGTCAAGCAGAGGGACCCAAGCTCATGGCCAGTGGAAGGGTGGGTTGATGAGAGGCGAGCCCTTGACCAGATGTGAGCCCAGTCATCACTCTGCATTTTCTAGGCCAAAGTCCAGGGGCTCGCTGTTGAAAT------------------------------GAAAGTCCTC----aaaacttataaattatatttttt-ataaagttatagaatttttaaataaaatttttataaaattataaat----tatatatctatattaaatttCCTGGaaataact-----tacagaaaagttgcaagaataaaaACAGTACAAAGGACACCCTTATTCACTGCACTCAG-TTAACGATTA------ACTGTTTTTCCTGGACCATTTGTGAGTAAGATGCATATACCATGAGCCTTTATCCTTAAGTTCTTCAATGCATATTTCCTAGGAAATGAGATATTGTGTTGTGTAGCCAGAGTACACTTATTAGCTTCAGTAAAATTAACATTGATGAATACCTTTATGTAATCTATCATGCATGTTCCAATTTGTTTTCAGTTGACCTgataatgtcctttatagcatTGTTTCC--CTTCCAGTGAGGGGTCCAGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82417106 889 + 85787240 TCTGGGGGTGAGGT-GGGGGAAAGCAATAAAAATACCTTCACAAACCAGTTCCTTTACTCTTTGATCCAGGTGGTTCCCACAGGTCCCTTGACCCCCGATAAAGTAATCCCAG--CTGCCTGCGAGGGAGGTGGAGGC-AGCCGGGGTT-CGTGGAGCCTGTGGTTATCTCCTTACCGAGAGCCTTATCAGCTTGCAGAGCCACCGTAAAGCTTGCTTTGACCTTTGGCAGAGACTCTACCTGTATCTCTGTCCACACACATGAGAGCAGGAGACAGATACCTGGGATGATCCTGAGACCCAACACCCAAAGCCCAGGCTTCTTTCTATG-------GGGGAGTCAAGCGGAGGGAGTCAAGCTCATAGCCAGTGGAGGGGTGGGTTGATGAGAGGCGAGCCCTTGACCAGATGTGAGCCCAGTAAACACACTGCATTTTCTAGGCCAAAGTCCAGGGGCTCGCTGTTGAAAT------------------------------TAAAGTCCTC----AAaaattataaattataattttt-ataaagttatagaattttaaaataaaatttttataaaattataaat----tatatatctataTTAAATTTCCTGGAAATAact-----tacagaaaagttgcaagaataaaaacagtacaaaggacacccttattcgctgcactcag-TTAACGATTA------ACTATGttttctggaccatttgtgagtaagatgcatataccataagcctttatccttaagttcttcaatgcatatttcctaggaaatgagatactgtgtcatgtagccagagtacacttatcagcttcagtaaaattaatattgatgaatacctttacgtaatctatcatgcatgttccaatttgttttcagttaacctgataatgtcctttatagcattgtttcc--cctccagtgaggggtccagtt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14097987 861 - 49578535 TCTGGAGGTGGGGT-GGGGGAAGGCAATAAAAATACCTTCACAAAGCAGTTCCTTTACTCTTTGATCCAGGTGGTTCCCACAGGTCCC-TGACCCTCGATAAAGTGATCCCGG--CTGTCTGCGGTGGAGGTGTAGGC-AGCCAGGGTT-CAGGGAGCCTGTGGTTATCTCCTTACCCAGTGCCTTATCAGCCAGCAGAGCTGCTGTAAAGCTTGCTGTGACCTTTAGCAGAGACTCCTTCTAAATCTCTGTCCACAGAAATGAGAGCAGGAGACAGACACCTGGGCTGATCCTGAGACCCAGCACCCAAAGCCCAGGCTTCTTTCTACG-------GGGAAGTCAAGCAGAGGGATCGAAGCTCATCGCCAGTGGAGGGGTCA-CTGATGAGAGGTGAA-CCTTTACCAGATGTCAGCCCAGTCGTCACTTTGCATTTTCTACGTCAAAGTCCAGGGGCTTGTTGTTGAAATTAGGCAGAGAGGACAAAGAATTGCCCTCTGCGAAGTCCTC----------------------------ATAAAATTATGACat-----------atttttaaaaaattataaat-----atatatatatG------TTCCTGGAAA----------TACAGAAAAGTCACAAGAACTAAAATAGTGCAAAGGACACCC-TACTCACTGTACTC-----AATGATTA------ACTGtttttcctggactgtttgtgagtaagaggcgtataccatgagcctttacccttgagttcttcaatgcatgtttcccaggaaatggaatattctctcatgta--cagagtgcagtgctcagcttcagtaaaatgaacattgatgaatacc-ttatgtcatctatggtgcacgtt-gaattttttttcagttggtcggataacgtccttcccagcattgtctcc--gctccagttaggggtccagcc i calJac3.chr19 C 0 C 0 s canFam3.chr7 36277434 883 + 80974532 TCTGGAGGTGGGGA-GGGGGAAGGCAGTAAAAATGCCTTCACAAACCAGTTCCTTTGCTCTGTGACCCAGGCAGGTCCCATCAGTAGCTTGACCCTCCATAA------TCTGGATTTGCAGGTGGTGGTGGTGTGGGCTAGCCAGGGTTCCAGGGAGCCTGTGGCTCTCTGCACATGGAGAGTCTCCT---------GAGCCACTGCAAGGATTG---------TTGCCAGAGACTCCCCCTGTGTCTGTCCCTGTGGAAGTGAGGGCAGGAGACAGGCACCTGAACTGATGTTGAGACCCACCATCCAAAGCCCATGTTTCTCTCTGTG-------GAGGAGCCAC---AAGGGACTCAGGCTCACAGGGAA-GCCAGGGCTGGCTGTTGTGAACC--ACCCATCAGCCGATGTGAACCTGGTTACCACGTGGCATCTTAGACAGTGACATTCAGAGGCTTGCTGTGGAAGGCAGGTAGACAAAACAAGGCATGGCCCCATGTAAATTCCTAAAGGGAAAATTTGAC-------------TCAAAATAAT----TTTTTCCCCACCTTGTTTATTCGCTTTTAAGT------------GAATTAGAATTTTTTAAAAATAACTTTTAATACAG-AACGTTGCAAGAATAAAAATAGTACAGAGGACACCA-CATTCCTTGTCTCTAGATTAACAGTTGCTCTCtagttttccccctgaatcat-tgagagtaaggcacatacaccagaagccttggtaccagaatacttccatgagtattccctaggaaatgggatattcttctgtatagccagagtccagttatcaggttcagtgggattaacattgataagtaactttatccaatcaacaattggtctttcagttt-ctttcaactcacccagtaatgtcctttataacatggtttcccttctctggggcagggttcagac i canFam3.chr7 I 113 C 0 e mm10.chr1 178696080 926 + 195471971 I a score=708848.000000 s hg38.chr1_KI270759v1_alt 93436 196 + 425601 taggatcagattgcatttcgttgtc--gtgtctct----ttttgagggtcttttaaCTGTACCATTATTATTGTTATCTGTCATCTTATTAGCTTATTCAAAGTTGTT----AGAGGTATTTCTTATT-TAGGGTACATCTCATTTACAATCATCCTTTCGTTCACTTGAAAATGAAGGCTAGGTTCTCTGGAGTCCAGACTCACTC s panTro4.chr1 224842305 196 + 228333871 taggatcagattgcatttcgttgtc--atgtctct----ttttgaggctcttttaaCTGTACCATTATTATTGTTATCTGTCATCTTATTAGCTTATTCAAAATTGTT----AGAGGTATTTCTTATT-TAGGGTACATCTCATTTACAATCATCCTTTCGTTCACTTGAAAATGAAGGCTAGGTTCTCTGGAGTCCAGACTCACTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226200834 196 - 229942017 taggatcagattgcatttagttgtc--atgtctct----ttttgaggctcttttaaCTGTACCATTATTATTGTTATCTGTCATCTTATTAGCATATTCAAAATTGTT----AGAGGTATTTCTTATT-TAGGGTACATTTCATTTACAGTCATCCTTTCGTTCACTTGAAAATGAAGGCTAGGTTCTCTGAAGTCCAGACTCACTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140089527 200 - 143122389 taggatcagattacatttagttgtc--atgtctct----ttttgaggctcttttaaccGTACCATTATTATTGTTATCTGTCATCTTGTTAGCTTATTCAAAATTGTTAGACAGAGGTATTTCTTATT-TAGGGTACATTTCATTTACAATCATCCTTTCGTTCACTTGAAAATGAAGGCTAGGTTCTCTGGAGTCCAGACTCACTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16808763 200 - 229590362 tgggatcagattgcatttagttgtc--atgtctct----ttttgaggcccttttaactgtaccaTTATGATTGTTACCTGTCATCTTATTAGCTTATTCAAAATTGTTAGACAGAGGTATTTCTTATT-TAGGGTACATTTCATTTACAATCATCCTTTCGTTCACTCGAAAATGAAGGCTAGGTTCTCTGGAGTCCAGACTCACTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223569222 200 - 227556264 tgggatcagattgcatttagttgtc--atgtctct----ttttgaggcccttttaactgtaccaTTATGATTGTTACCTGTCATCTTATTAGCTTATTCAAAATTGTTAGACAGAGGTATTTCTTATT-TAGGGTACATTTCATTTACAATCATCCTTTCGTTCACTCGAAAATGAAGGCTAGGTTCTCTGGAGTCCAGACTCACTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16620325 200 - 220367699 TGGGATCagattgcatttagttgtc--atgtctct----ttttGAGGCCCTTTTACCTGTACCATTATTATTGTTACCTGTCATCTTATTAGCTTATTCAAAATTGTTAGACAGAGGTATTTCTTATT-TAGGGTACATTTCATTTACAATCATCCTTTCGTTCACTCGAAAATGAAGGCTAGGTTCTCTGGAGTCCAGACTCACTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82417995 198 + 85787240 tgggatcagattgcatttagttgtc--atgtctct----ttttgaggcccttttaaCTGTACCATTATGATTGTTACCTGTCGTCTTATAAGCTTATTCAAAATTGTTATAC--AGGTATTTCTTATT-TAGGGTACATTTCATTTACAATCATCCTTTGGTTCACTGGAAAATGAAGGCTAGGTTCTCTGGAGTCCAGACTCACTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14098848 196 - 49578535 tagaatcagattgcatttagttatg--atgtctct----ttttgaggatcttttaaCTGTACCATTATTA---TTATCTGCCATCTTATTAGCTTATTCTAAACTGTTAGACAGACATATTTCTTATT-TAGGGTACATTTCATTTACAACCATCCTTTCGTTCACTCAAAAACTGAGGCTAGGTTCTCTGGAGTCCAAGCCCACT- i calJac3.chr19 C 0 C 0 s mm10.chr1 178697006 207 + 195471971 TAGGATAAGACTGCACTTAACCATTCGGTGTTGCTTTTGTTTGGAAGATCTTTCCGCAGTGATGTTATCATAGCTATTGGTCATTTGAACAGTATACTATGAAGTGTTAGCTAGGTACACTTTCGATCACAGGGCACATCAACTTCACAGCCAGTCTTTTATTCCCTTGAAAGCTAAAACTCTGTTCTCTGGAGTCCAAGACCACTC i mm10.chr1 I 926 I 305 s canFam3.chr7 36278317 185 + 80974532 caggatgaggttgcaattcattttc--atgtctct----ttTTGAAGATCTTTTAACAGTTACATTATTA--GTTAATGGTCTCCTTAGTGCCTTCTTCAAAATCTTTAGATAAAAACACTTCTAGTC-GAG-------------TATCACCATCCTGTTGTTCACTTGAAAGCCAAGGCTAGATTCTCTGGAATCCAAGCCCACTC i canFam3.chr7 C 0 C 0 a score=4695.000000 s hg38.chr1_KI270759v1_alt 93632 4 + 425601 CCCT--- s panTro4.chr1 224842501 4 + 228333871 CCCT--- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226201030 4 - 229942017 CCCT--- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140089727 4 - 143122389 CCCT--- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16808963 4 - 229590362 CCGT--- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223569422 4 - 227556264 CCGT--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16620525 4 - 220367699 CCGT--- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82418193 4 + 85787240 CCGT--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14099044 4 - 49578535 CCAT--- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36278502 4 + 80974532 ---TGAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178697213 305 + 195471971 I a score=2922338.000000 s hg38.chr1_KI270759v1_alt 93636 822 + 425601 TCTATGTGAAGTGTTTTCCTGTGTATGGTGGAAGGGATGGGGGTGAGAAATTTTGGATGTACA---TTATGTAC--ATGGTTGACTTTTCTTTGTTTGATTTAAATCATACAAAAACAGATCAGATCCTTTGAGATCATTTTCAAATTCCGCTGTTGTCAATCCGACTTATTGCCAAGGAGATCGTCCCTTCATCCTTGAGGAGGAAGAAAGGATCATTTTGAGAATCTTCGTTTCATATCAAGACAACACACTCTTCTGAATCTAGAAACAGA-------AATACCTTTACATTTACTTACAGCCCTTATCTCAGCACTTTCATGCATCTTATG-------AGAAGCAACACGCATGATAATTAAGCATTTCTATGCATGCAGAGCTTTGGTTAGCTTGGT-AAAGGGTATGTTCAGCAATTCTGGTCCCTGCCCTCCAGAAAAACTTGCTTAAGATGCACCAATATGCATTATTAAATATAATAACACATCAAGTAAAAACTATGCCTAACACTCGCAGGCTATCATACAGACTTAGAATTATTGAGATGa-ttttt---cagatggtaacatttaatcacagagaagctgaataatttgccgaagtttacTTT-AAAAAAAATCAGAGCTACGATACCAATGTTCAGTACCTTTCTTTCTTAGTATAATCCCCTACTTTCAAAATAACCTTTATAGATA---TTTCTAGTATCTACGCTAAGAAAAAGAGTAATGGTGAAAGACTGAGAGAAG---ACACTGC--TTTTTAAAGGCTATAGAAATCTGGTACATGGCTTCTTTGAAG--AAAAAAAATTAAATGGAAGGAAAATTGGCTGCTCATTTTCTGAGG s panTro4.chr1 224842505 821 + 228333871 TCTATGTGAAGTGTTTTCCTGTGTATGGTGGAAGGGATGGGGGTGAGAAATTTTGGATGTACA---TTATGTAC--ATGGTTGACTTTTCTTTGTTTGATTTAAGTCATACAAAAACAGATCAGATCCTTTGAGATCATTTTCAAATTCCGCTGTCGTCAATCCGACTTATTGCCAAGGAGATCGTCCC-TCATCCTTGAGGAGGAAGAAAGGATCATTTTGAGAATCTTCGTTTCATATCAAGACAACACACTCTTCTGAATCTAGAAACAGA-------AATACCTTTACATTTACTTACAGCCCTTATCTCAGCACCTTCAGGCATCTTATG-------AGAAGCAACACGCATGATAATTAAGCATTTCAATGCATGCAGAGCTTTGGTTAACTTGGT-AAAGGGTATGTTCAGCAATTCTGGTCCCTGCCCTCCAGAAAAACTTGCTTAAGATGCACCAATATGCATTATTAAATATAATAACACATCAAGTGAAAACTATGCCTAACAGTCGCAGGCTATCATACAGACTTAGAATTATTGAGATGa-ttttt---cagatggtaacatttaatcacagagaagctgaataatttgccgaagtttacTTT-AAAAAAAATCAGAGCTACAATACCAATGTTCAGTTCCTTTCTTTCTTAGTATAATCCCCTACTTTCAAAATACCCTTTCAAGATA---TTTCTAGTATCTACGCTAAGAAAAAGAGTAATGGCGAAAGACTGAGAGAAG---ACACTGC--TTTTTAAAGGCTATAGAAATCTGGTACATGGCTTCTTTGAAG--AAAAAAAATTAAATGGAAGGAAAATTGGCTTCTCATTTTCTGAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226201034 823 - 229942017 TCTATGTGAAATGTTTTCCTGTATATGGTGGAAGGAATGGGGGTGAGAAATTTTGGATGTACA---TTATATAC--ATGGTTGACTTTTCTTTGTTTGATTTAAATCATACAAAAACAGATCAGATCCTTTGAGATCATTTTCAAATTCTGCTGTTGTCAATCCGACTTTTTGCCAAGAAGATCTTCTCTTCATCCTTGAGGAGGAAGAAAGGATCATTTTGAGAATCTTTGTTTCATATCAAGACAACACACTCTTCTGAATCTAGAAGCAGA-------AATACCTTTACATTTACTTACAGCCCTTATCTCAGCATTTTCATGCATCTTATG-------AGAAGCAATACGCATGATGATTAAGCATTTCTATGCATGCAGAGCTTTGGTTAGCTTGGT-AAAGGATATGTTCAGCAATTCTGGTCCCTGCCCTCCAGCAAAATTTGCTTAAGATGCACCAATATGCAGTATTAAATATAATAACACATCAAGTAAAAACTATGCCTAACACTCGCAGGCTATCATACAGACTTAGAATTATTAAGATGA-TTTTT---CAGATGCCAACATTTAATCACAGAGAAGCTGAATAGTTTGCCAAAGTTTACTTTAAAAAAAAATCAGAGCTACAATACCAATGTTCAGTTCCTTTCTTTCTTAGTATAATCCCCTACCTTCAAAATACCCTTTATAGATA---TTTCTAGTATCTATGCTAAGAAAAAGAGTAATGGCGAAAGAGTGAGAGAAG---ACACTGC--TTTTTAAAGGCTATAGAAATCTGGTACATGGCTTCTTTGAAG--AAAAAAAATTAAATGGAAAGAAAATTGGCTTCTCATTTTCTGAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140089731 821 - 143122389 TCTATGTGAAGTGTTTTCCTGTGTATGGTGGAAGGGATGGGGATGAGAAACTTTGGATGTACA---TTATATAC--ATGGTTGACTTTTCTTTGTTTGATTTAAATCATACAAAAACAGATCAGATCCTTTGAGATCATTTTCAAATTCTGCTGTTGTCAATCCGACTTATTGCCA---AGATCTTCCCTTCATCCTTGAGGAGGAAGAAAGGATCATTTTGAGAATCTTCGTTTCATATCAAGACAACACACTCTTATGAATCTAGAAACAGA-------AATACCTTTACATTTACTTACAGCCCTTATCTCAGCACTTTTATGCATCTTATG-------AGAAGCAACACGCATGATAATTAAGCATTTCTATGCATGCACAGCTTTGGTTAGCTTGGT-AAAGGGTATGGTCAGCAATTCTGGTTCCTGCCCTGCAGAAAAACTTGCTTAAGATGCACCAATATGCATTATTAAATATAATAACACATCAAGTAAAAACTATGCCTAACACTCACAGGCTATCATACAGACTTAGAATTATTGAGATGA-TTTTT---CAGATGGCAACATTTAATCACAGAGAAGCTGAATAATTTGCCACAGTTTACTTT-AAAAAAAATCAGAGCTACAATACCAATGTTCAGTTCCTTTCTTTCTTAGTATAATCCCCTACTTTCAAAATACCCTTTATAGATA---TTTCTAGTATCTATGCTAAGAGAAAGAGTAATGGCGAAAGAGTGAGAGAAG---ACGCTGCTTTTTTTAAAGGCTATAGAAATCTGGTACATGGCTTCTTTGAAG--AAAAAAAATTAAATGGAAAGAAAATTGGCTTCTCATTTTCCGAGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16808967 825 - 229590362 TCTATGTGAAGTGGTTTCCTGTGTATGGTGGAAGCGATGTGGGTGAGAAATTTTGGGTGTACA---TTTTGTAC--ACGGTTGACTTTTCTTTATTTCACTTAAATCAAACAAAAACTGATCAGATCCTTTGAGATCATTTTCAAATTCCCCTGTTGTCAATCCGAACTATTGCCCAGAAGGTCTTTTCTTCATCCCTGAGGAGGAAGAAAGGATCGTTTTGAGAATCTTCGTTTCATATCAAGACAACACCCTCTTATGAATCTAGAAACAAA-------AATACCTTTCTGTTTACTTAGAGCCCTTATCTCAGCACTTTCACGCATCTTATG-------AGAAGCAACACGCGTGATAATTAAGCGTTTCTCTGCATGCAGAGCTTTGGTTAGCTTGGT-AAAGGGTATGTTCAGCAGTTCTGGTCCCTGCCCTCCAGAAAAACTTGCTTAAGATGCACCGATATGCATTATTAAATGTAATAACACATCAAGTAAAACCTATGCCTAGCACTCACAGGCTGTCATACAGACTTAGAATTATCGAGATGATTTTTT---CAGATGGCAGCATTTAATCACAGGGAAGCTGAATGATTTGCCAAAGTTTACTTT-AAAAAACATCAGAGCTACAATACCAATGTCCAGTTCCTTTCTTTCTTAGTATAATCCCCTACGTTCAAAATACCCTTTATAGAGA---TTTCTAGTATCTATGCTAAGAAAAAGAGTCATGGCGAAAGAGTGGGAGAAG---ACACTCC-TTTTTTAAAGGCTGTAGAAATCTGGTACATGGCTTCTTCGAAGA-AAAAAAAATTAAATGGAAAGAAAATTGGCTTCTCATTTTCTGAGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223569426 825 - 227556264 TCTATGTGAAGTGGTTTCCTGTGTATGGTGGAAGCGATGTGGGTGAGAAATTTTGGGTGTACA---TTTTGTAC--ACAGTTGACTTTTCTTTATTTCACTTAAATCAAACAAAAACTGATCAGATCCTTTGAGATCATTTTCAAATTCCCCTGTTGTCAATCCGACCTATTGCCCAGAAGGTCTTTTCTTCATCCTTGAGGAGGAAGAAAGGATCGTTTTGAGAATCTTCGTTTCATATCAAGACAACACCCTCTTATGAATCTAGAAACAAA-------AATACCTTTCTGTTTACTTAGAGCCCTTATCTCAGCGCTTTCACGCATCTTATG-------AGAAGCAACACGCGTGATAATTAAGCGTTTCTCTGCATGCAGAGCTTTGGTTAGCTTGGT-AAAGGGTATGTTCAGCAGTTCTGGTCCCTGCCCTCCAGAAAAACTTGCTTAAGATGCACCAGTATGCATTATTAAATGTAATAACACATCAAGTAAAACCTATGCCTAGCACTCACAGGCTATCATACAGACTTAGAATTATCGAGATGATttttt---cagatggcagcatttaatcacagggaagctgaatgatttgccaaagtttacTTT-AAAAAACATCAGAGCTACAATACCAATGTCCAGTTCCTTTCTTTCTTAGTATAATCCCCTACGTTCAAAATACCCTTTATAGAGA---TTTCTAGTATCTATGCTAAGAAAAAGAGTCATGGCGAAAGAGTGGGAGAAG---ACACTCC-TTTTTTAAAGGCTGTAGAAATCTGGTACATGGCTTCTTCGAAGA-AAAAAAAATTAAATGGAAAGAAAATTGGCTTCTCATTTTCTGAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16620529 825 - 220367699 TCTATGTGAAGTGGTTTCCTGTGTATGGTGGAAGTGATGTGGGTGAGAGATTTTGGGTGTACA---TTTTGTAC--ATGGTtgacttttctttatttcacttaaatcaAACAAAAACTGATCAGATCCTTTGAGATCATTTTCAAATTCCCCTGTTGTCAATCCGACCTATTGCCCAGAAGGTCTTTTCTTCATCcttgaggaggaagaaaggatcGTTTTGAGAATCTTTGTTTCATATCAAGACAACACCCTCTTATGAATCTAGAAACAAA-------AATACCTTTCCGTTTACTTAGAGTCCTTATCTCAGCACTTTCACGCATCTTATG-------AGAAGCAACACGTGTGATAATTAAGCGTTTCTGTGCATGCAGAGCTTTGGTTAGCTTGGT-AAAGGGTATGTTCAGCAGTTCTGGTCCCTGCCCTCCAGAAAAACTTGCTTAAGATGCACCGATATGCATTATTAAATGTAATAACACATCAAGTAAAACCTATGCCTAGCACTCACAGGCTATCATGCAGACTTAGAATTATTGAGATGATTTTTT---CAGATGGCAGCATTTAATCACAGGGAAGCTGAATGATTTGccaaagtttacttt-aaaaaacatcaGAGCTACAATACCAATGTccagttcctttctttcttagtaTAATCCCCTACGTTCAAAATACCCTTTATAGAGA---TTTCTAGTCTTTATGCTAAGAAAAAGAGTCATGGCGAAAGAGTGGGAGAAG---ACACTAC-TTTTTTAAAGGCTGTAGAAATCTGGTACATGGCTTCttcgaaga-aaaaaaaattaaatggaaagaaaattggCTTCTCATTTTCTGAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82418197 827 + 85787240 TCTATGTGAAGTGTTTTCCTGTGTATGGTGGAAGCGATGTGGGTGAGAAATTTTGGGTGTACA---TTTTGTAC--ATGGTTGACTTTTCTTTAGTTCACTTAAATCAAATAAAAACAGATCAGATCCTTTGAGATCATTTTCAAATTCCCCTGTTGTCAATCTGACTTATTGCCCAGAAGGTCTTTTCTTCATCCTTGAGGAGGAAGAAAGGATCGTTTTGAGAATCTTCATTTCATATCAAGACAACACACTCTTATGAATCTAGAAACAAA-------AATACCTTTCCGTTTACTTAGAGCCCTTATCCCAGCACTTTCACGCATCTTATG-------AGAAGTAACACGCGTGATAATTAAGCATTTCTGTGCATGCAGAGCTTTGGTTAGCCTGGT-AAAGGTTATGTTCAGCGATTCTGGTCCCTGCCCTCCAGAAAAGCTTGCTTAAGATGCACCAATATGCATTATTAAATATAATAACACATCAAGTAAAACCTATGCCTAGCACTCACAGGCTATCATACAGACTTAGAATTATCGAGATGATTTTTT---CAGATGGCAGCATTTAATCACAGGGAAGCTGAATGATTTGCCACAGTTTACTTT-AAAAAACATCAGAGCTACAATACCAATGTCCAGTTCCTTTCTTTCTTAGTATAATCCCCTACGTTCAAAACACCCTTTACAGAGA---GTTCTAGTATCTGTGCTAAGAAAAAGAGTCATGGCGAAAGAGTGAGAGAAG---ACACTACTTTTTTTAAAGGCTATAGAAATCTGGTACATGGCTTCTTTGAAGATAAAAAAAATTAAATGGAAAGAAAATTGGCTTCTCATTTTCTGAGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14099048 802 - 49578535 TCTATCGGAAGTGTTTTCCTACGTGTGGCGGAAGGGATG-GGCTGAGAAATTTTGGATGTACA---TTTTATAC--ATGGTTG---------------ATTTAAATCATAGAAAAACAGATCAGATCCTTCGAGGTCATTTTCAGATTTCCCTGTTGTCAATCCAGCTTACTGCCAAGAAGGTCTTCCCTTCATCCTTGAGGAGGAAGAAAAGATCATTCTGAAAATCTTTGTTTCATATCAGGACAACGCACTCTTAAGAATCTAGAAACAGA-------AATACCTTTCCATTCACTTAGAGTCCTTATCTCAGCATTTTCATGCATCTTACGTGTCACCAGAAGCAACACACGTGACAGTTAAGCGTTTCTGTGCATGCAGAGCTTTGCTTAGCTTGGC-AAAGGGTATATTCAGCAATTCTGGTCCCTGCCCTCCAGAAAACCTTGCTTGAGATGCACCAATATGCATTATTAAGTATAATAACACATTGAGTAAAAAGTATGCCTAACACTTGCGGGCTAT-----AGACCTAGAATTATTGAGATGA-TTTTT---CAGATGGTAACGTTTAGTCACAGGGAAGTTGAATCATTTGCCAGAGTTTACTTT-AAAAAAAGTCAGAGCTATAATCCCGATGTTAAG----TTTCTTTCTTGGTATAAT-CCCTACTTTCAAAATACCCTTTGTAGATA---TTTCTAGTATCTATGCTAAGAAAAAGAGGAATGGTGGAAGAGTGAGAGATG------CTAC-TTTTTAAAAGGCTGTAGAAATCTGGTATATTGCTTCTTTGAAGA-AAAAAAAGTTACGTGGAAAGAAAATTGGCTTCTCATTTTCTGAGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178697518 744 + 195471971 tttgtgcaaggtgctTTCTTTTGTGTG----------------TGAGGAGCTCTGGGTGTGCAGTTTTCTGTGCTTATGGTT----------------ATTTGATGCA----------------------TGGGATC--CTTCATGTTTGCCTATTGCAAAACTGACC-ACTGTCAGGG------CTTCCTTACTCCAAAAGGAGAAAAAAAAACCATTTTGACAATCTTTGTTTTGTATCGAGACAACACA-TCTTGTGAATCCAGCAGCAGA---------------TGTATTTATTTGAGGCTCCTCTCTCGGCATTGTTTTGCTTCTGATGCGTCAAGGGCAGTAACTTGTATGATAATCGGGCATTTCTATGCAGGCAGTGCTTTAGCCAGCTCAATCAAAAGGGACATTCAGCAGGTCTGGTCCCTGCCGTTCTGACAACCGGCTTTAACATGCACCAACATGCATTATTAATTACAAAAGCACATCAATAAAAA-----------CACTCGCAAGATACAAtgcaca-ttagaattatcgaggtga-tttttagatggatggtgatgctcaggccca-agaagccgattaaaccaCCAAAGGTTTTACT-AATAAAAGCCAGAGCCGTGGCGCCAA----CTGTCCCTAACTTTCCCACTGGATTTCCTTGCTTTCAAAGCTCCCTTCATGAATGGCTTCCTCAGTGT-----CTAAGGATCAGAGATGTGCTGGGAGACTGACACAAGCTGACATTTT--TTTTTAAAGGTTGCAGAAATCCATGGCATAAGTTCTTTGA----AGAGAGAGTAAAATGTAAGAA----TAGGTTCTCATTTTACAAGA i mm10.chr1 I 305 C 0 s canFam3.chr7 36278506 810 + 80974532 ACCATAGAAAAGGTTTTCACATGTGAGGTGGAAGGGATGGGAGCAAGGAATTTTGCGAGTGTA---TTTTATGC--ACGGTTGACTTTCCTTTATTTGATTGGAA-CACACAAAAACAGATCGGAAACGGCGAGATCATTCTCAAATTCCCCTGTTGTCAGTCTGACTTATTGCCAAGAAG-TTTCTACTTTGTCCTTGGGGAGGAAGAA--GATCATTTTGAGATTCT--GTTTTATCTTGAGACAACACACTGTTATGAATCTAGAAACAGATAAAAAAAATACCTTTACATTAACTCAGAGTCCTTATCTCAGCACTTCCATGTAATTTATGAATCAACAGCAACAACACATGTGATAATTAAGCATTTCTATGCGTGCAGTGCTTTGGTTAGCTCAGG-AAAGGGTATATTCAGCAATTCTGGTCTCTGCCCTCCAGAACAACTTGCTTAACATGCATCAATATGCATTATTAAGTGTTATAACACATCAAGTAAAAAATATGCCCAACACTTGCAAGACATAACACAGACTTAGAATTATTGGGGTAA-TTTGT---CTGATGGCAACATTTAATCAGAGAGAGACTGAATAATTCACCAAAGCTTACTTT-AAAGAA--TCAGAGCTACAATGCTGA---------------CCTTTTGGTGTAATCTCTCACTTTCAAAATACTCTATCTGGATGTCTTCTTTAGTATCTG----AAAAACAAGAGGGAAGGTGGAAGAATAATAGAAG---ATACATT-TTTTTTTAAGTTTACAGAAGTCTGGA--ATAGCTTCTTTGAAA--AAAAAAAGTTAAATG-AAAAAACTTTGGCTTCTTGTTTTCCAAAG i canFam3.chr7 C 0 I 777 a score=18708.000000 s hg38.chr1_KI270759v1_alt 94458 6 + 425601 GTGCAA s panTro4.chr1 224843326 6 + 228333871 GTGCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226201857 6 - 229942017 GTGCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140090552 6 - 143122389 GTGCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16809792 6 - 229590362 GTGCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223570251 6 - 227556264 GTGCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16621354 6 - 220367699 GTGCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82419024 6 + 85787240 GTGCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14099850 6 - 49578535 GTGCAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178698262 6 + 195471971 GCACTA i mm10.chr1 C 0 C 0 e canFam3.chr7 36279316 777 + 80974532 I a score=298298.000000 s hg38.chr1_KI270759v1_alt 94464 83 + 425601 TTTTATATAGAAGATATTTCACTGTGGTCTGTATTTAACAAGCTGCGGGGACCCT-AAGGC-TGGTAGATGGTCAGACTGGTAAC s panTro4.chr1 224843332 83 + 228333871 TTTTATATAGAAGATATTTCACTGTGGTCTGTATTTAACAAGCTGCGGGGACCCT-AAGGC-TGGTAGATGGTCAGACTGGTAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226201863 83 - 229942017 TTTTATATAGAAGATATTTCACTGTGGTCTGTATTTAACAAGCTGCGGGGACCCT-AAGGC-TGGCAGATGGTCAGACTGGTAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140090558 83 - 143122389 TTTTATATAGAAGATATTTCACTGTGGTCTGTATTTAACAAGCTGCGGGGACCCT-AAGGC-TGGTAGATGGTCAGACAGGTAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16809798 83 - 229590362 TTTTATATAGGAGATATTTCACTGTGGTCTGTATTTAAGAAGCTGCGGGAACCCT-AAGGC-TGGTAGATGGTCAGACTGATAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223570257 83 - 227556264 TTTTATATAGGAGATATTTCACTGTGGTCTGTATTTAAGAAGCTGCGGGAACCCT-AAGGC-TGGTAGATGGTCAGACTGATAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16621360 83 - 220367699 TTTTATATAGGAGATATTTCACTGTGCTCTGTATTTAAGAAGCTGCAGGAACCCT-AAGGC-TGGTAGATGGTCAGACTGGTAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82419030 83 + 85787240 CTTTATCTAGGAGATATTTCACTGTGCTCTGTATTTAGGAAGCTGCGGGAACCCT-AAGGC-TGGTAGATGGTCAGGCTGGTAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14099856 84 - 49578535 TTTTATATAGAAGATATTTCACTGTGGTGTGTGTTTAAGAAGCTTCAGGGACTTTAAAGGC-TGGTAGGTGGTCAGATTGGTAAC i calJac3.chr19 C 0 I 319 s mm10.chr1 178698268 84 + 195471971 TTTTCTGTGAAAGGGACTTCAGTGTGGGCTGTGTTTGCAAGGCCACAGGGGTCTGGAAGGC-TGGTGGAGGGCCAGGGTGGTGAC i mm10.chr1 C 0 C 0 s canFam3.chr7 36280093 73 + 80974532 TTTTAAATAGAAGTTAGTTT-----------TAAAGAAGAGGCTGCAGGGACTCT-GAAGCGTGGCAGGGGGTCAGATTGATAAT i canFam3.chr7 I 777 C 0 a score=762681.000000 s hg38.chr1_KI270759v1_alt 94547 261 + 425601 ATTTTCTAATGTGACTCTGATAATTTT--GACATAGGCTTTCTTTTTGGCTGCCCTAAGTATTTATCCTTTTCACCTGATTTACTTTAC---ATTCGCCTATTTTACCATGGGTTACAGACAAG----AACAAATTGGACTC---------TTAAAATGGCATATAATTTTAATATTTTCTGAGTTTCTAGTATTCTAAATTCA---------TAATTA-----------------------------------------------------TAACCTGAGGGATGTATGCCCACAGGGCATAAAACAATCACATAG-----ATAGTGAG---------------------------------------------tttttt--------------------------------tt-----tttttttt s panTro4.chr1 224843415 262 + 228333871 ATTTTCTAATGTGACTCTGATAATTTT--GACATAGGCTTTCTTTTTGGCTGCCCTAAGTATTTATCCTTTTCACCTGATTTACTTTAC---ATTCACCTGTTTTACCATGGGTTACAGACAAG----AAAAAATTGGACTC---------TTAAAATGGCATATAATTTTAATATTTTCTGAGTTTCTAGTATTCTAAATTCA---------TAATTA-----------------------------------------------------TAACCTGAGGGATGTATGCCCACAGGGCATAAAACAATCACATAG-----ATAGTGAG--------------------------------------------TTTTTTT--------------------------------TT-----TTTTTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226201946 257 - 229942017 ATTTTCTAACATGACTCTGATAACTTT--GACATAGGCTTTCTTTTTGGCTGCCCTAAGTATTTATCCTTTTCACCTGATTCACTTTAC---GTTCGCCTATTTTACCATGGGTTACAGACAAG----AAAAAATTGGACTC-----------AAAATGGCATATAATTTTAATA-TTTCTGAGTTTCTAGTATTCTAAATTCA---------TAATTA-----------------------------------------------------TAACCTGAGGGATGTATGCCCAGAGGGCATAAAACAATCACATAG-----ATAGTGAG----------------------------------------------ATTTT--------------------------------TT-----TTTTTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140090641 244 - 143122389 ATTTTCTAATGTGACTCTGATAACTTT--GACATAGACTTTCTTTTTGGCTGCCCTAAGTATTTATCCTTTTCACCTGATTTACTTTAC---GTTCGCCTATTTTACCATGGGCGA-------------------TGGACTC---------TTAAAATGGCATATAATTTTAATATTTTCTGAGTTTCTAGTATTCTAAATTCA---------TAATTA-----------------------------------------------------TAACCTTAGGGATGTATGCCCACAGGGCATAAAACAATCACATAG-----ATAGTGAG-----------------------------------------------ATTT--------------------------------TT-----TTTTTTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16809881 260 - 229590362 ATTTTCTAATGTGACTCCGGTAACTTT--GATGTGGGCTTTCTTTTTGGCTGCCCTAAGTATTTATCCTTTTCACCTGATTTACTTCAC---CTTCACCTATTTTACCGTGCATTATGGACAAG----AAAAACTTAGACTC---------TTAAAATGGCATATTATTTTAATATTTTCTGAGTTTCTAGTATTCTAAATTCA---------TAATTA-----------------------------------------------------TAACCTGAGGGATATATGCCCACAGGGCATAAAACAATCACATAG-----ATAGTGAG----------------------------------------------ttttt--------------------------------tt-----tttttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223570340 260 - 227556264 ATTTTCTAATGTGACTCCGGTAACTTT--GATGTGGGCTTTCTTTTTGGCTGCCCTAAGTATTTATCCTTTTCACCTGATTTACTTCAC---CTTCACCTATTTTACCGTGCATTATGGACAAG----AAAAACTTAGACTC---------TTAAAATGGCATATTATTTTAATATTTTCTGAGTTTCTAGTATTCTAAATTCA---------TAATTA-----------------------------------------------------TAACCTGAGGGATATATGCCCACAGGGCATAAAACAATCACATAG-----ATAGTGAG----------------------------------------------TTTTG--------------------------------TT-----TTTTTTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16621443 260 - 220367699 ATTTTCTAATGTGACTCTGGTAACTTT--GATGTGGGCTTTCTTTTTGGCTGCCCTAAGTATTTATCCTTTTCACCTGATTTACTTCAC---CTTCACCTATTTTACCGTGCATTATGGACAAG----AAAAACTTAGACTC---------TTAAAATggcatattattttaatattttctgagttTCTAGTATTCTAAATTCA---------TAATTA-----------------------------------------------------TAACCTGAGGGATATATGCCCACAGGGCATAAAACAATCACATAG-----ATcgtgag----------------------------------------------gtttt--------------------------------tt-----gttttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82419113 259 + 85787240 ATTTTCTAATGTGACTCTGGTAAC-TT--GATGTGGACTTTCTTTTTGACTGCCCTAAGTATTTATCCTTTTCACCTGATTTACTTCAC---CTTCACCTATTTTACTGTGCATTAGGGACAAG----AAAAACTTAGACTC---------TTAAAATGGCATATTATTTTAATATTTTCTGAGTTTCTAGTATTCTAAATTCA---------TAATTA-----------------------------------------------------TAACCTGAGGGATATATGCCCACAGGGCATAAAACAATCACATAG-----ATACTGAG----------------------------------------------ttttt--------------------------------tt-----tttttttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14100259 261 - 49578535 ATTTTCTGATGTGACTTCGATAACTTG--GACGTAGTTTCTCTTTTTGGCTGCTCTAAGTACTTGT-CTTTTCACCTGATTTACTTTTC---CTTCACCTATTTTACCATGGGTTATGGACAAGA---AAAAAATTGGACTC---------TTAAAATGGCATATAACTTTATTATTTTCTGAGTTTCTAATATTCTAAATTCA---------TAATTA-----------------------------------------------------TAACCTGAGGGAAGTAGGTCCACAGGGCTTAAAACAATCACGTAG-----ATAGTGAG---------------------------------------------ACTTTT--------------------------------GT-----TGTTGCTG i calJac3.chr19 I 319 C 0 s mm10.chr1 178698352 371 + 195471971 GCTTTCTAATCTACTTCTGG--------------------TCTTTTAG-----------------------------GGTTCACCTCAT---CTTTGCTTATTGATCCCTGGCTAGAGAAGGAAGTGCACAAAACAAAACTTTTTTTTTTTTTAGAAAGTCTTGGAATTTTAGTGATTTCTGGTCTCGAAGTGTCGTAATCTCACAGGttttttaattattattattagatattttctttatataCATTTCAAATTTCAAATGCTATCGTTTTAACCTAAGTGAGTTCTGCTCCCAGTGTATAAAGTCATCAGATGGGGCCTATGCTGAGGAAGAACTCGGTGGTAGAGCACTCGTCTGGCACTTGCTTATTGGCATTTTTATTAGCTGTAAACAGTGATGTCTTTAAAAGCATT-----CTTCCTTT i mm10.chr1 C 0 I 119 s canFam3.chr7 36280166 265 + 80974532 ACTTTGTATCTTACTCCTCATCGCTCTTAAACGTAGGC--TCTTTATGGGTGCCATAAGGA--TATTCTTTTTACCTAGTTCACTTTATAAACTTTGCCTATTTTACTAAGAGTTATAAACAGG----AAAAAAATGGACTT---------TAAAAGTTGCATGTAATTTTAATTTTTTCTATGTTTATTGTAT-GTAGATTCA---------TAATTG-----------------------------------------------------TAACCTGGGGGAAATGTGTTCATCGGGTCCAAAGCAATCACATAA-----ATAATGAG----------------------------------------------ATTTC--------------------------------TTTGAAGTTGTCTTT i canFam3.chr7 C 0 C 0 a score=1835275.000000 s hg38.chr1_KI270759v1_alt 94808 586 + 425601 t----------------tGAAATTA------CCTTGG-----------------------------------CTACTTGAGGAT----TCTCTACACCCC----------------------------------Tgctatccagcatgggggccaccagcca-----catggggctactgagca-ttgagacgtggctagtctgaactgaatgtgactggtctgtataaaat----acatattagagttcaaagacttggtacat-taaaaagaatgtaaaatatctcattagtagac--ttttttatattgattacatgttgaaatgataatattttggata--------tgcagggttaaatgaaatgttattaaagttaatttcacctgtttctttttaattttttgatgtggctact--------agaaaaccccaaattccatatgtggtttgcatttgtggctcccattatatttctgttggaaagcTCAGCTCTAGAAGGAAAGAA-----AATACAT----AAAAAAAGACCAAAAAAAACCCAACTCATTCAGTGTATTTTAGAGTGAATTACGGAAGGGAAAGCTGAATAGCCAATGATCCCA------------------TTTTTTTTCTTGATTAGGTTTGGAGTTCATTAAAGCTTCTTTAATTAAATATATTGTAAATCTGCTTCAAGTTCCCAGTTGAGATGAGAATTGAATCT-TTTTGTTT s panTro4.chr1 224843677 590 + 228333871 T----------------TGAAATTA------CCTTGG-----------------------------------CTACTTGAGGAT----TCTCTACACCCC----------------------------------Tgctatccagtatgggagccaccagcca-----catggggctactgagca-ttgagacgtggctagtctgaactgaatgtgactggtctgtataaaat----acacattagagttcaaagacttggtacat-taaaaagaatgtaaaatatctcattagtagac---tttttatattgattacatgttgaaatgataatattttggata--------tgcagggtcaaatgaaatgttattaaagttaatttcacctgtttctttttaactttttgatgtggctact--------agaaaaccccaaattccatatgtggtttgcatttgtggctcccattatatttctgttggaaagcTCAGCTCTagaaggaaagaa-----aatacagaaaaaaaaaaaaaacaaaaaaaCCCCAACTCATTCAGTGTATTTTAGAGTGAATTACGGAAGGGAAAGCTGAATAGCCAATGATCCCA-----------------TTTTTTTTTCTTGATTAGGTTTGGAGTTCATTAAAGCTTCTTTAATTAAACATATTGTAAATCTGCTTCAAGTTCCCAGTTGAGATGAGAATTGAATCT-TTTTGTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226202203 595 - 229942017 T----------------TGAAATTACCTTTTCCTTGG-----------------------------------CTGCTTGAGGAT----TCTCTACACCCC----------------------------------Tgctatccagtatgggagccatcagcca-----catggggctactgagca-ttgagacatggctagtctgaattgaatgtgactagtctgtataaaat----acacattagagttcaaagactttgtacat-taaaaagaatgtaaaatatctcattagtagac--ttttttatagtgattacatgttgaaatgataatattttggata--------tgcagggttaaatgaaatgttattaaagttaatttcacctgtttctttttaattttttgatgtggctact--------agaaaaccccaaattccatatgtggtttgcatttgtggctcccattatatttctgttggaaagcTCAGCTCTAGAAGGAAAGAA-----AATACAG-AAAAAGGAAAAAAAAAAAACAACCCAACTTATTCAGTGTATTTTAGAGTGAATTACGGAAGGGAAAGCTGAATAGCCAATGATCCCA--------------TTTTTTTTTTTTCTTGGTTAGGTTTGGATTTCATTAAAGCTTCTTTAATTAAATGTATTGTAAATCTGCTCCAAGTTTCTAGTTGAGATGAGAATTGAATCT-T----TTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140090885 584 - 143122389 T----------------TGAAATTACCTTTTCCTTGG-----------------------------------CTACTTGAGGAT----TCTCTACACCCC----------------------------------Tgctatccagtataggagccgccaggca-----catggggctagtgagca-ttgagacatggctagtctgaattgaatgtgactagtctgtataaaat----acacgttagagttcaaagacttggtacat-taaaaagaatgtaaagtatctcattagtagac--ttttttatattgattacatgttgaaatgataatattttggata--------tgcagggttaaatgaaatgttattaaagttaatttcatctgtttctttttaatgttttgatgtggctact--------agaaaaccccaagttccatatgtggtttgcatttgtggcccccattttatttctgttggaaagcTCAGCTCTAGAAGGAAAGAA-----AATACAG-------------GAAAAAAAACCCCAACTCATTCAGTGTATTTTAGAGTGAATTATGGAAGGGAAAGCTGACTAGCCAATGATCCCT-----------------TTTTTTTTTTTTGGTTAGGTTTGGATTTCATTAAAGCTTCTTTAATTAAATATATTGTAAATCTGCTCCAAGTTCCCAGTTGAGATGAGAATTGAATCT-TTTTGTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16810141 597 - 229590362 t-------------------aattaCCTTTTCCTTGG-----------------------------------CTACTTGAGGAT----TCTCTACACCCC----------------------------------Tgctctccagtatgggagccaccagccacaatgcacagggctactcagca-ttgagacacgggtagtctgaattgaatgggactagtctgtataaaat----acacattagagttcaaagacttggtacat-aagaaagaatgtaaaatatctcattagtagac-tttttttatattgattacttgtttaaatgatagtattttggata--------tgtagggttaaacaaaatgttgttaaagttaattttacctgttactttttacttttttgatgtggctact--------agaaaaccccaaattccatatgtggtttgcatttgtggctcccattatatttctgttggaAAACTCAGCTCTAGAAGGAAAGAA-----AATACAG----AAAAAAACAAAAACAAAAAACCAATTCATTCAGTGTATTTTAGAGTGAATTGCAGAAGGGAAAACTGAACAACCAATGATCCCA----------------TTTTTTTTTTCTTGGTTAGGTTTGGATTTCATTAAATCTTCTTTAATTAAATCTATTGTAAATCTGCTCCAAGTTCTCAGCTGCGATGAGAATTGAATCT-TTTTGTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223570600 595 - 227556264 T-------------------AATTACCTTTTCCTTGG-----------------------------------CTACTTGAGGAT----TCTCTACACCCC----------------------------------Tgctctccagtatgggagccaccagccaccatgcacagggctactcagca-ttgagacacgggtagtctgaactgaatgggactagtctgtataaaat----acacagtagagttcaaagacttggtacat-aagaaagaatgtaaaatatctcattagtagacttttttttatattgattacttgtttaaatgatagtattttggata--------tgtagggttaaatgaaa---tgttaaagttaatttcacctgttactttttacttttttgatgtggctact--------agaaaaccccaaattccatatgtggtttgcattTGTGGCTCCCATTACATTTCTGTTTGAAAACTCAGCTCTAGAAGGaaagaa-----aatacag----aaaaaaacaaaaacaaaaaaCCAATTCATTCAGTGTATTTTAGAGTGAATTGCGGAAGGGAAAACTGAACAACCAATGATCCCA----------------TTTTTTTTTTCTTGGTTAGGTTTGGATTTCATTAAATCTTCTTTAATTAAATCTATTGTAAATCTGCTCCAAGTTCTCAGCTGAGATGAGAATTGAATCT-TTTTGTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16621703 595 - 220367699 t----------------taaaattaccttttccTTGG-----------------------------------CTACTTGAGGAT----TCTCTACACCCC----------------------------------TGCTCTCCAGTATGGGAGCCACCAGCCACAATGCACAGGGCTACTCAGCA-TTGAGACATGGGTAGTCTGAATTGAATGGGACTAGTCTGTATAAAAT----ACACATTAGAGTTCAAAGGCTTggtacat-aaaaaagaatgtaaaatatctcattagtagac-tttttaaatattgattacatgtttaaatgataatattttggata--------tgtagggttaaatgaaa---tgttaaagttaatttcacctgttactttttacttttttgatgtggctact--------agaaaaccCCAAATTCCATATGTGGTTTGCATTTGTGGCTCCCATTACATTTCTGTTGGAAAGCTCAGctctagaaggaaagaa-----aatacag----aaaaaaacaaaaacaaaaaaccaattcaTTCAGTGTATTTTAGAGTGAATTGCAGAAGGG-AAACTGAACAACCAAtgatccca-----------------ttttcttttcttggttaggtTTGGATTTCATTAAATCTTCTTTAATTAAATCTATTGTAAATCTGCTTCAAGTTCTCAGTTGAGATGAGAATTGaatct-ttttgttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82419372 603 + 85787240 ttttttttttttttttttGAAATTACCTTTTCCTTGG-----------------------------------CTGCTTGAGGAT----TCTCTACACCCC----------------------------------Tgctctccagcatgggagccgccagccgcaatgcacggggctactcagca-ttgagatatggggagtctgaattgaatgggactagtctgtgtaaaat----acacattagagttcaaagacttggtacat-aaaaaagaatgtaaaatatctcattagtagac--ctttttatattgattacatgtttaaatgataatattttggata--------tgtagggttaaatgaaa---tgttaaagttaatttcacctgttactttttacttttttgatgtggctact--------agaaaaccccaaattccatatgtggtttgcatttgtggctcccattatatttctgttggaAAACTCAGCTCTAGAAGGAAAGAA-----AATACAG----GGAAAA--------AAAAACCCAATTCATTCAATGTATTTTAGAGTGAATTGCGGAAGGGAAAACTGAACAGCCAATGGTCCCA-------------TTTTTTTTTTTTTCTTGGTTGGGTTTGGATTTCATTAAAGCTTCT----TTAAATCTATTGCAAATCTGCTCCAAGTTCTCAGTTGAGATGAGAATTGAATCT-TTTTGTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14100520 598 - 49578535 T----------------TGAAATTACCTTTTCCTTGG-----------------------------------CTAGTTGAGGAT----TCTCTGCACGCC----------------------------------Tgctatcccttcggggagccatcagcca-----catgtggctacggagca-ttgaggggtggctagtctgaacggaatgtgactagtctgtataaaat----acacattagatttcaaagacttggtacataaaaaaagaatgtaaaatacctaattagtaaat---tttttatattgattacatgttgaaatgataatattttggata--------tatggggttaaatgaaa---tgtt---gttaatctcacctgtttctttttacttttttgatgtggctact--------agaaaaccccacatttcatatgtggtttgcattTGTGGCTCTCATTGTGTTTCTGTTGGAAAGCTCAGCTCTAGGAGGAAAAAA-----AATACAG----AACAGA------AAAAAAAAGCTCCTAACTCAGTGTATTTTAGAGTAAATTACTGAAGGGAAAGCTGAATAGCCAGTGATCCCGtttttttgttttgttttgttttttgttttggttaggtttgGATTTCACTAAAGCTTCTTTAATTAAATCTATTGTAAATCTGCCCCAAGGTCCCAGTTGAGAAGAGAATGGAATCT-TTTTGTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178698842 623 + 195471971 ----------------ctgaagttatgggtggcttggtgcaccatgggagagctgagaaacaagcccaggtcctctgtaagaatgagctctccgcgaccaagccattgcttctgttccATGAAtcttagatatgtgatgttcagtatggtggccaatagcca-----tatgtagttactgacat-ctgaagtggggctgg-ctagtcaaaagggctctgtgccataagtgatgaccacttttcaggtttcagagacttactccct-ggaaaag-----------ttttattggttttg--cttttaaatatgattataatattgaatg----tacattggata--------tcatgggtgagagataaggtcactgaagtgaatttcatctcttcctttgtgct-tttaaatctggttactgctgtccaacagagcagcaaa--------------tgcatttgtgg-tacctctgtctttctgttggagagcTCCACTCTAGGACAAAGGAACATTTAATGCAG----AAGAAG------------------TTTGTACCGCACAGTTTTGACTGAAGGATGGACAGG--------ACAGCTAGCGA-CCGA-------------------TTTTGATGGTTGTTGGATTCTGGTTCCATTAAGGCCCCCTTAATCAAACTTCTTGTCAATTTACCCCTAATCTTTGATTGGAAGGATCACTGAATATGTTTTATTT i mm10.chr1 I 119 I 233 s canFam3.chr7 36280431 527 + 80974532 ------------------------------TCCTTGA-----------------------------------CTAGTGGAGGAT----TCTGtagatcct----------------------------------tgctaatcaatatggtagccatcggccg-----tatgtgactattgaggatttgggagatggttagtctgaactgaattg---tggtataagtaaaat----acacattacctctttaggacttagtacatgaaaagaaaacataaaatatctcattagtaaaggcctttttagattaaatatatgttgaaatgatagtattttggatacagtgagttaatgagttaaataaaa---tatttaaattaaattcacctgtttctttgcatgtttttaatgtggctgtc--------ataa-------------------------------------------tatttCTATTGGACAGTTCCCATCTGGAGGGAAGGAA-----AATAGAG----AGCTAA----------AAACCCAACTCATTTCTTGTACTTCAGAGTACATTGCTGAAGGGAAAGCTAAATATCCAGTGATCCCA----------------------ATTTTTGGGTTACATTTGGATTTCATTAAAGCTTCTTTAGTTAAATCTACTGTAAACCTGCCCCAAGGTCCCAGGTGGGAAGAGAATTGGATCT-TTTTGTTT i canFam3.chr7 C 0 C 0 a score=2101517.000000 s hg38.chr1_KI270759v1_alt 95394 492 + 425601 AATTTT-----------------------------------------------------------AAAAATTCTAAGAA-------AATCCTGAACTCACTTCAAAAGCGACTTGTTTTTTGAAATCTTTGTA-AAAAGCTTTCCATTTACATGGATTGGAGGTCTGATTAATATAGAGTTTTGAAGGGGCTAAAGAGGTGTGAAAATTATCCAGAAACTTCTGAAAGGACCTTTCTTATCT-----CAC----AGGCATCC-AGGGAGACATAAGGGCCCTTAGAAGCCGCAGATCAGCCATAAGCATCTGTGTTCACAGTTTCCTTCCAATAAGCAAAAACACTGGGAGAGATAACATATTTATTCCTAGGTGTCTATAACTGAATTTATGGGTGTAACTTGCTGGATATTATTGCCCTTGTAAACCCATGTAACTGCACACGTAAAGCATGTTTTTATTAGTTCCTACATAAAATTTTTATGATAATGGCAAACAAAGGACCAATTTAGTTTAGCTGAGTTTGTTCTTATTACTCCAGCTTCCAATAGATAAGCAACAGTGCAAAC s panTro4.chr1 224844267 492 + 228333871 AATTTT-----------------------------------------------------------AAAAATTCTAAGAA-------AATCCTGAACTCACTTCAAATGTGACTTGTTTTTTGAAATCTTTGTA-AAAAGCTTTCCATTTACATGGATTGGAGGTCTGATTAATATAGAGTTTTGAAGGGGCTAAAGAGGTGTGAAAATTATCCAGAAACTTCTGAAAGGACCTTTCTTATCT-----CAC----AGGCATCC-AGGGAGACATAAGGGCCCTTAGAAGCCACAGATCAGCCATAAGCGTCTGTGTTCACAGCTTCCTTCCAATAAGCAAAAACACTGGGAAAGATAAAATATTTATTCCTAGGTGTCTATAACTGAATTTATGGATGTAACTTGCTGGATATTATTGCCCGTGTAAACCCATGTAACTGCACACGTAAAGCATGTTTTTATTAGTTCCTACGTAAAATTTTTATGATAATGGCAAACAAAGGACCAATTTAGTTTAGCTGAGTTTGTTCTTATTACTCCAGCTTCCAATAGATAAGCAACAGTGCAAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226202798 492 - 229942017 AATTTA-----------------------------------------------------------AAAAATTCTTAGAA-------AATCCTGAACTCACTTCAAAAGCAACTTGTTTTTTGAAATCTTTGTA-AAAAGCTTTCCATTTACGTGGATTGGAGGTCTGATTAATATAGAGTTTTGATGGGGCTAAAGAGGTATGAAAATTATCCAGAAACTTCTGAAAGGACTTTTCTTATCT-----CAC----AGGCATCC-AGGGAGACATAAGGGCCCTTAGAAGCTGCAGATCAGCCATAAGCATCTGTGTTCACAGCTTCCTTCCAATAAGCAAAAACACTGGGAAAGATAAAATATTTATTCCTAGGTGTCTATAACTGAATTTATGGATATAACTTGCTGGATATTATTGCCCGTGTAAACTCATGTAACTGCACACGTAAAGCATGTTTTTATTAGTTCCTACATAAAATTTTTATGATAATGGCAAACAAAGGACCAATTTAGTTTAGCTGAGTTTGTTCTTATTACTCCAGCTTCCAATAGATAAGCAACAGTGCAAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140091469 491 - 143122389 AATTTA-----------------------------------------------------------AAAAATTCTAAGAA-------AATCCTGAACTCACTTCAAAAGCGACTTGTTTTTTGAAATCTTTGTA-AAAAGCTTTCCATTTACATGGATTGGAGGTCTGATTAATACAGAGTTTTGAAGGGGCTAAAGAGGTGTGAAAATTATCCAGAAACTTCTGAAAGGACCTTTCTTATCT-----CAC----AGGCATCC-AGGGAGACATAAGGGCCCTTAGAAGCTGCAGATTAGCCATAAGCGTCTGTGTTCACAGCTTCCTTCCAATAAGCAAACACATTGGGAAAGATAAAATATTTATT-CTAGGTGTCTATAACTGAATTTATGCATATAACTTGCTGGATATTATTGCCCGTGTAAACCCATGTAACTGCAAACATAAAGCATGTTTTTATTAGTTCCTACATAAAATTTTTATGATAATGGCAAACAAAGGACCAATTTAGTTTAGCTGAGTTTGTTCTTGTTACTCCAGCTTCCAATAGATAAGCAACAGTGCAAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16810738 491 - 229590362 AATTT------------------------------------------------------------AAAAATTCTAAGAA-------AATCCTGAACTCACTTCAAAAGCGACTTCTTTTTTGAAAGCTTTGTA-AAAAGCTTTCCATTTACATGGATTGGAGGTCTGATTAATATAGAGTTTTGAAGGGGCTAAAGAAGTGTGAAAATTATCCAGAAACTTCTGAAAGGACCTTTCTTACCT-----CAC----AGGCATCC-AGGGAGACATAAGGGCCCTTAGAAGCCGCAGATCAGCCATAAGCGTCTGTGTTCACAGCTTCCTTCCAATAAGCAAAAACACTGGGAAAGATAAAATATTTATTCCTAGGTGTCTATAACTGAATTTATGGATGTAACTGGCTGGATATTATTGCCCATGTAAACCCATGTAACTGCACACGTAAAGCATGTTTTTATTAGTTCCTACATAAAATTTTTATGATAATGGCAAACAAAGGACCAATTTAGTTTAGCTGAGTTGGTTCTTATTACTCCAGCTTCCAATAGATAAGCAGCAGTGCAAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223571195 491 - 227556264 AATTT------------------------------------------------------------AAAAATTCTAAGAA-------AATCCTGAACTCACTTCAAAAGCGACTTCTTTTTTGAAAGCTTTGTA-AAAAGCTTTCCATTTACATGGATTGGAGGTCTGATTAATATAGAGTTTTGAAGGGGCTAAAGAAGTGTGAAAATTATCCAGAAACTTCTGAAAGGACCTTTCTTACCT-----CAC----AGGCATCG-AGGGAGACATAAGGGCCCTTAGAAGCCGCAGATCAGCCATAAGCGTCTGTGTTCACAGCTTCCTTCCAATAAGCAAAAACACTGGAAAAGATAAAATATTTATTCCTAGGTGTCTATAACTGAATTTATGGATGTAACTGGCTGGATATTATTGCCCATGTAAACCCATGTAACTGCACACGTAAAGCATGTTTTTATTAGTTCCTACATAAAATTTTTATGATAATGGCAAACAAAGGACCAATTTAGTTTAGCTGAGTTTGTTCTTATTACTCCAGCTTCCAATAGATAAGCAGCAGTGCAAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16622298 491 - 220367699 aattt------------------------------------------------------------aaaaattctaagaa-------aatccTGAACTCACTTCAAAAGAGACTTCTTTTTTGAAAGCTTTGTA-AAAAGCTTTCCATTTACGTGGATTGGAGGTCTGATTGATATAGAGTTTTGAAGGGGCTAAAGAAGTGTGAAAATTATCCAGAAACTTCTGAAAGGACCTTTCTTACCT-----CAC----AGGCATCC-AGGGAGACATAAGGGCCCTTAGAAGCCGCAGATCAGCCATAAGCGTCTGTGTTCACAGCTTCCTTCCAATAAGCAAAAACactgggaaagagaaaatatttattcctaGGTGTCTATAACTGAATTTATGGATATAACTGGCTGGATATTATTGCCCATGTAAACCCATGTAACTGCACACGTAAAGCATGTTTTTATTAGTTCCtacataaaatttttatgatAATGGCAAACAAAGGACCAATTTAGTTTAGCTGAGTTTGTTCTTATTACTCCAGCTTCCAATAGATAAGCAGCAGTGCAAac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82419975 487 + 85787240 AATTT------------------------------------------------------------AAAAATTCTAAGAA-------AATCCTGAACTCACTTCAAAAGCGACTTCTTTTTTGAAAGCTTTGTA-AAAAGCTTTCCATTTACGTGGATTGGAGGTCTG----ATATAGAGTTTTGAAGGGGCTAAAGAAGTGTGAAAATTATCCAGAAACTTCTGAAAGGACCTTTCTTACCT-----CAC----AGGCATCC-AGGGAGACATAAGGGCCCTTAGAAGCTGCAGATCAGCCGTAAGCGTCTGTGTTCACAGCTTCCTTCCAATAAGCAAAAACACTGGGAAAGATAAAATATTTATTCCTAGGTGTCTATAACTGAATTTATGGATATAACTGGCTGGATATTATTGCCCATGTAAACCCGTGTAACTGCACACGTAAAGCATGTTTTTATTAGTTCCTACATAAAATTTTTATGATAATGGCAAACAAAGGACCAATTTAGTTTAGCTGAGTTTGTTCTTATTACTCTAGCTTCCAATAGATAAGCAGCAGTGCAAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14101118 491 - 49578535 AATTTT-----------------------------------------------------------AAAAATTCTAAGAA-------AATCCTGAACTTACTTCAAAAGCGACTTGTTTTCTGAAAGCTTTGTA-AAAAGCTTTCCCTTTGCGTGAATTGGAGGTCTGATTAATACAGAGTTCTGAAGGGGCTAAAGGAGTGTGAAAATTATCCAGAAACTTCTGAAAGGACCTTTCTGATCT-----CAC----AGGCATCC-AGGGAGACATAAGGGCCCTTCGAAGCCTCAGACCTGCCATAACCGTCTGTGTTCACAGCTTCCTTCCAATAAGCAAAAACACTGGGAAAGATAAAATATTTATTCCTAAGTGTCTGTAACTGAATTTATGGCTATAACTCGCTGGATATTATTG-CCATGTGAACCCATGTAACTGCACACGTAAAGCATGTTTTTATTAGTTCCTACATAAAATTTTTATGATAATGGCAAACGAAGGACCAATTTAGTTTAGCTGAGTTCGTTCTTATTACTCCAGCTTCCGATAGATAAGCAACCGTGCAAAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178699698 560 + 195471971 -atttttaagggtgggactggggctgcgatcagaggtaaagtgaaaacataaattaaTTAATGAAAAAAATAATAAAAATCAGGACAACTCCATCTTCATTTCAAAACTGACTTACTTTTAATAGCATTTGTGCAAAAACATTCTATTTACGTGGATGGGAGGCCTGATT--CACAGAGTTCTTAGGAGGCTAACGAATTGTGAAAATTATCCAGAAACTTGTGAAAGAACCTGTCTGGTCC-----CATGGAGAGGCATGC-AGGGGGACTTAAGGGCCCTTAGAAGTCTCAGACCAGCTATCTGCCTCTGTGTTCACACCTTCCTTCCAATAAATGAAGCCATTGGGGAAGATAAAATATTTATTCCTAAGTGTCTATAACTGAATTTATGACTATAACTTGCTGGATATTATTGCCTGTGTAAACCCATGTAACTGTGCACGTAAAACATGTTTTTATTAGTTCCTACATAAAAATTTTATGATAATGGTGAACAAAGGAGCAATTTAGTTTAGCAGAGTTTGTTCTTATTACTCTGGCTTCCAATAGACTAGCTACAGTGCAAAC i mm10.chr1 I 233 C 0 s canFam3.chr7 36280958 495 + 80974532 -----------------------------------------------------------GCTTAAAAGAATTCTAAGAA-------AATCCTGAATTCATTTCAAAAGCGATTCACTTTTAAAAGCTCTGTTA-AAAAGCTTTCCATTTACTGAGGTTGGAAGTATGATTAACATTGAGTTCTTAAGAGGCTAAGTAATCGGGAAAATTATCCAGAAACTTCTGAGAGGACTTTCCCTGGTCTCGAGCAG----AGGCATCTGGGGGGGACTTAAGGACCATTAGTAGCCTCAGATCAGCCATACGCTCCTGTGTTCACACCTTCCCTCCAATAAACGAAAACATCGGGAAAGATAAAATATTTATTCCTAAGTGTCTATAACTGAATTTATGGATCTAACTTGCTGGATATTATTGCCTGTGCAAACCCATGCAACTGTGCACGTAAAGCATGTTTTTATTAGTTCCTACATAAAATTTTTATGGTAATGGCAAACAAAGGACCAATTTAGTTTAGCTGAGTTTG---TTATTATTCCAGCTTCGAATAGATAAGCGGCAGTGCAAAT i canFam3.chr7 C 0 C 0 a score=11916.000000 s hg38.chr1_KI270759v1_alt 95886 3 + 425601 AGC s panTro4.chr1 224844759 3 + 228333871 AGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226203290 3 - 229942017 AGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140091960 3 - 143122389 AGC i nomLeu3.chr5 C 0 M 1101 s rheMac3.chr1 16811229 3 - 229590362 AGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223571686 3 - 227556264 AGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16622789 3 - 220367699 agc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82420462 3 + 85787240 AGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14101609 3 - 49578535 AGC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36281453 3 + 80974532 AAC i canFam3.chr7 C 0 C 0 e mm10.chr1 178700258 0 + 195471971 C a score=10476.000000 s hg38.chr1_KI270759v1_alt 95889 3 + 425601 Agg s panTro4.chr1 224844762 3 + 228333871 Agg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226203293 3 - 229942017 Agg i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16811232 3 - 229590362 Agg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223571689 3 - 227556264 Agg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16622792 3 - 220367699 agg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82420465 3 + 85787240 Agg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14101612 3 - 49578535 Agg i calJac3.chr19 C 0 C 0 s canFam3.chr7 36281456 3 + 80974532 AGG i canFam3.chr7 C 0 C 0 e mm10.chr1 178700258 0 + 195471971 C e nomLeu3.chr5 140091963 1101 - 143122389 M a score=336854.000000 s hg38.chr1_KI270759v1_alt 95892 147 + 425601 ctgggcgcggtggctcacgcctgtaatcccagcagtttgggaggccgaggcgggcggattgcttgaggtcaggagttcgagaccagcctggccaacatggtgaaa--ccccatctctagtaaaaatac--aaaaaattatctgggcgtggt s panTro4.chr1 224844765 147 + 228333871 ctgggcgcggtggctcacgcctgtaatcccagcagtttgggaggccgaggcgggcggattgcttgaggtcaggagttcgagaccagactggccaacatggtgaaa--ccccatctctagtaaaaatac--aaaaaattagctgggcgtggt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226203296 146 - 229942017 ctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagattgcttgaggtcaggagttggagaccagcctggccaacatggtgaaa--ccccatctctagtaaaaatac---aaaaattagccgggcatggt i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16811235 147 - 229590362 ctgggcgcggtggctcacgcctgtaatctcggcactttgggaggccgaggtgggtggattgcttgaggtcagcagttcaagaccagcctggccgacatggtgaaa--ccccatctctagtaaaaatac--aaaaaattagccgggcgtggt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223571692 147 - 227556264 ctgggcgcggtggctcacgcctgtaatctcggcactttgggaggccgaggtgggtggattgcttgaggtcagcagttcaagaccagcctggccgacatggtgaaa--ccccatctctagtaaaaatac--aaaaaattagccgggcgtggt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16622795 147 - 220367699 ctgggcgcggtggctcacgcctgtaatgctggcactttgggaggccgaggtgggtggattgcttgaggtcagcagttcgagaccagcctggccgacatggtgaaa--ccccaggtctagtaaaaatac--aaaaaattagccgggcgtggt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82420468 147 + 85787240 ctgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcggattgcttgaggtcagccgttcgagaccagcctggccaacatggtgaaa--ccccatctctagtaaaaatac--aaaaaattagccgggcgtggt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14101615 151 - 49578535 ccgggcgcggtggctgacgcctgtaatcccagcactttgggaggctgaggtgggcagattgcttgaggtcaggagttggaaaccagactggccaacatggtaaaactccccatttctaataaaaatacaaaaaaaattagccgcatgaggt i calJac3.chr19 C 0 C 0 e mm10.chr1 178700258 0 + 195471971 C e canFam3.chr7 36281459 0 + 80974532 C e nomLeu3.chr5 140091963 1101 - 143122389 M a score=294634.000000 s hg38.chr1_KI270759v1_alt 96039 112 + 425601 ggcacatgcctataatcccagctactcaggaggctgaggcatgagaattgcttgaactcgggaggcggaggttgcagtgagcctagatagagccattgcactccagcctggg s panTro4.chr1 224844912 112 + 228333871 ggcacatgcctataatcctggctactcaggaggctgaggcatgagaattgcttgaactcgggaggcagaggttgcagtgagcctagatagagccattgcactccagcctggg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226203442 111 - 229942017 ggcacatacctgtaatcccggctactca-gaggctgaggcacgagaattgcttgaacttgggaggtggaggttgcagtgagcctagattgagccattgcactccagcctggg i ponAbe2.chr1 C 0 M 620 s nomLeu3.chr5 140093064 107 - 143122389 ggcacatgcctgtaatcccggctactcaggaggctgaggcatgagaattgcttgaactcaggaggtggaggttgtggtgag-ctagatcgagccactgcactccagcc---- i nomLeu3.chr5 M 1101 C 0 s rheMac3.chr1 16811382 112 - 229590362 ggcacatgcctgtaatcccagctactcaggaggctgaagtgggagaatcacttgaacttgggaggcggaggttgcagtgagcctagatcgcgccactgcactccagcctggg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223571839 112 - 227556264 ggcacatgcctgtaatcccagctactcaggaggctgaagtgggagaatcacttgaacttgggaggcggaggttgcagtgagcctagatcgcgccactgcactccagcctggg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16622942 112 - 220367699 ggcacatgcctgtaatcccagctactcaggaggctgaagtgggagaatcacttgaacttgggaggcggaggttgcagtgagcctagatcgcgccactgcactccagcctggg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82420615 112 + 85787240 ggcacatgcttgtaatcccagctactcaggaggctgaagtgggagaatcacttgaacttgggaggtggaggttgcggtgagccgagattgcgccactgcactccagcctggg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14101766 98 - 49578535 ggcatgtgc-tgtcatcccagctatgcag-------------gagaattgcttgagactgggaggctgaggttgtagtgagcctagattgtgccactgcactccagcctggg i calJac3.chr19 C 0 C 0 e mm10.chr1 178700258 0 + 195471971 C e canFam3.chr7 36281459 0 + 80974532 C a score=97543.000000 s hg38.chr1_KI270759v1_alt 96151 125 + 425601 agacagagcgagattccatctc--------caaacaaacaaacaaacaaagaaacacacacacac---aaaaacaccacc--aaaaaaaacccccgaaacagcaacaacaacaacaaaaaaaacaCCCCAC--TGCAAAT s panTro4.chr1 224845024 137 + 228333871 agacagagcgagactccatctcaaaacaaacaaacaaacaaacaaacaaacaaacaaacacacacgcaaaaaaaaccaccaaaaaaaaaaCCCCCGAAACAGCAACAACAACAAC-AAAAAAACACCCCAC--TGCAAAT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140093171 121 - 143122389 ----agagcgagaatccatctc--------caaacaaataaacaaacaaacacacacacacacac----aaaacaccacc---aaaaaagtccccaaaaaaccaacaacaacaacaacaaaaacaCCCCACAGTGCAAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16811494 96 - 229590362 agacagagcaagactccatctc--------aaaacaaaca----------------------------aacaacaataac---aacaaaaaccacaaaat-----caaaaacaaacaaaaaaacaCCCCATAGTGCAAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223571951 96 - 227556264 agacagagcaagactccatctc--------aaaacaaaca----------------------------aacaacaacaac---aacaaaaaccacaaaat-----caaaaacaaacaaaaaaacaCCCCATAGTGCAAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16623054 93 - 220367699 agacagagcaagactccatctc--------aaaacaaaca----------------------------aacaac---aac---aacaaaaaccacaaaat-----caaaaacaaacaaaaaaacaccccatAGTGCAAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82420727 101 + 85787240 agacagagcaagattccatctc--------aaaacaaacaaaacaaca---------------ac---aacaacaacaac---aacaaaaaccacaa---------aaacacaaacaaaaaaa-acCCCATAGTGCAAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14101864 75 - 49578535 cgacagagcgaga-tccatccc--------caaacacaca----------------------------cacacacacaca---caca------------------cacacacacacacacacacac-------TGCAAAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178700258 0 + 195471971 C e canFam3.chr7 36281459 0 + 80974532 C e ponAbe2.chr1 226203553 620 - 229942017 M a score=19326.000000 s hg38.chr1_KI270759v1_alt 96276 7 + 425601 AGCAGCA s panTro4.chr1 224845161 7 + 228333871 AGCAGCA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140093292 7 - 143122389 AGCAGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16811590 7 - 229590362 AGAAGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223572047 7 - 227556264 AGAAGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16623147 7 - 220367699 AGAAGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82420828 7 + 85787240 AGAAGCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14101939 7 - 49578535 AGGAGCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178700258 7 + 195471971 AGCAGCA i mm10.chr1 C 0 C 0 e canFam3.chr7 36281459 0 + 80974532 C e ponAbe2.chr1 226203553 620 - 229942017 M a score=2758855.000000 s hg38.chr1_KI270759v1_alt 96283 902 + 425601 GTCAACAGGGAAGAGAGAGTCAGTGCTTGCAGGGCTGGGGCTCCTGGCCTGTGGG-TAAGGAG----------------GATTGAGGCTCCCC---TAGGCCTCATGGGACTGCAGTAGGGTGAGGCTGGGCTGGCCTGCCCTCAGCT---TGCAAGCCTGTTGTTGAGCAGCTGTTCTCCACGTTGGTAGCTGTGGAG--TATTCTAATTTAGCTTCTGAAAAGGCTTGCATAGCTAGTATTGAAAGAACTCCCACTTACTGTATTTCAGCTGGAGAATTACAGAGAAAAAA-GGTTCAAGTGGCTTATTGTAGGTCATCTCCCACTCTGGGATTTAAACAAAGCACAAACAGAACAAAGTTCCTTTAAACTGGGTGCCTTCATCTGAGTCCCTCCTGTCTGCAAGGTTTGGCAGGCTCGCTGGATACAG----AGCCCACGCCTCTCATTCTCACTGCTGCCTTTTTATGTTTGA-CCCTTG-GATGTGGCCAACGATTCCCATGGTGACCTGGATTGGAGGGAAGTTTTTCTAGAATTTGAAGATAAAGCATCTTTCATAAATACTGCCTGTTCCTTCCCAATGACTAGTTAAAAATTGAT----AGTCTGTAAACTAGAGTGAGTGCGATCCGTgaacccaaattcaggagacagagtttgacgtgtctaaatgtacgcaggggacaatagcaagaaatattttaagctgaatgagcctgaaatataaaagacataggattgttataGATATGTCATACTGAAGGCTGCCTTGGATGGAAAATCAACTG-AAAAAAGGGCAAGCTTAGTACACACTAGGTTTATTCTGGGCTAAGGCCGGTCTAGGACATTCA-TGAAATTACAACTTAGTGATTAGGGGCTATAGTGGTTTAGATTCTAGACTTTAGAAGTATTTACACATCAAAAAACTCATGG s panTro4.chr1 224845168 898 + 228333871 GTCAACAGGGA----AGAGTCAGTGCTTGCAGGGCTGGGGCTCCTGGCCTGTGGG-TAAGGAG----------------GATTGAGGCTCCCC---TAGGCCTCATGGGACTGCAGTAGGGTGAGGCTGGGCTGGCCTGCCCTCAGCT---TGCAAGCCTGTTGTTGAGCAGCCGTTCTCCATGTTGGTAGCTGTGGAG--TATTCTAATTTAGCTTCTGAAAAGGCTTGCATAGCTAGTATTGAAAGAACTCCCACTTACTGTATTTCAGCTGGAGAATTACAGAGAAAAAA-GGTTCAAGTGGCTTATTGTAGGTCATCTCCCACTCTGGGATTTAAACAAAGCACAAACAGAACAAAGTTCCTTTAAACTGGGTGCCTTCATCTGAGTCCCTCCTGTCTGCAGGGTTTGGCAGGCTCGCTGGATACAG----AGCCCACGCCTCTCATTCTCACTGCTGCCTTTTTATGTTTGA-CCCTTG-GATGTGGCCAACGATTCCCAGGGTGACCTGGATTGGAGGGAAGTTTTTCTAGAATTTGAAGATAAAGCATCTTTCATAAATACTGCCTGTTCCTTCCCAATGACTAGTTAAAAATTGAT----AGTCTGTAAACTAGAGTGAGTGCGATCCGTgaacccaaattcaggagacagggtttgacgtgtctaaatgtacgcaggggacaatagcaagaaatattttaagctgaatgagcctgaaatatacaagacataggattgttataGATACGTCATACTGAAGGCTGTCTTGGATGGAAAATCAACTG-AAAAAAGGGCAAGCTTGGTACACACTAGGTTTATTCTGGGCTAAGGCCGGTCTAGGACATTCA-TGAAATGACAACTTAGTGATTAGGGGCTATAGTGGTTTAGATTCTAGACTTTAGAAGTATTTACACATCAAAAAACTCATGG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140093299 899 - 143122389 GTCAACAGGGAGGAGAGAGTCAGTGCTTGCTGGGCTGGGGCTCCTGGCCTGTGGG-TAAGGAG----------------GATTGAGGCTCCCC---TAGGCCTGGTAGGACTGCAGTGGGGTGAGGCTGGGCTGGCCTGCCCTCAGCT---TGCAAGCCTGTTGCTGAGAAGCCGTTCTCCACATTGGTAGCTGTGGAG--TATTCCAA-TTAGCTTCTGAAAAGGCTTGCATAGCTACTATTGAAAGAACTCCCACTTACTGTATTTCAACGGGAGAATTACAGAGAAAAAA-GGTTCAAGTGGCTTATTGTAGGTCATCTCCCACTCTGGGATTTAAACAAAGCACAAACAGAACAAAGTTCCTTTAAACTGGGTGCCTTCATCTGAGTCCCTCCTGTCTGCGGGGTTTGGCAGGCTCGCTGGATACAG----AGCCCACGCCTCTCATTCTCACTGCTGCCTTTTTATGTTTGA-CCCTTG-GATGTGGCCAACGATTCCCATGGTGACCTGGATTGGAGGGAAGTTTTTCTAGAATTTGGAGATAAAGCATCTTTCATAAATCCTGCCTTTTCCTTCCCAACGACTAGTTAAAAATTGAC----AGTCTGTAAACTAGAGCGAGTGCGATCCctgaacccaaattcaggagacagggtttgacgtgtctaaatgtactca-gggacaatagcaagaaatattttaagctgaatgagcctgaaaaataaaagacataagattgttataGATATGTCACACTGAAGGCTGTCTTGGATGG-AAATCAGCTG-AAAAAAGGGCAAGCTTGGTACACACCAGGTTTACTCTGGGCTAAGGCCGGTCTAGGACATTAA-TGAAATTACAACTTAGTGATTAGGGGCTATAGTGGTTTAGATTCTAGACTTTAGAAGTATTTACACATCAAAAAACTCGTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16811597 904 - 229590362 GTCAACAGGCAAGAGCGAGTCAGTGCTTGCAGGGCTGGAGCTCCTGGCCTGTGGG-TAAGGAG----------------GACTGAGACTCCCC---TAGGCCTGATGGGACTGCAGTAGGGTGAGGCTGGGCTGCCCTGCCCTCAGCT---TGCAAGCCTGTTGTTGAGCAGCTGTCCTCCACGTTGGTAGCTGTGGAGTATATTCTAATCTAGCTTCTGAAAAGGCTTGCATAGCTACCATTGAAAGAACTCCTACTTACTGTATTTCAACTGGAGAATTACAGAGAGAAAA-GGTTCAAGTGGCCTATTGTAGGTCATCTCCCACTCTGGGATTTAAACAAAGCACAAACAGAACAAAGTTCCTTTAAACCGGGTGCCTTCATCTGAGTCCCTCCTGTCTGCGGGGGTTGGCAGGCTCGCTGGATGCAG----AGCCCACGCCTCTCATGCTCACTGCTGCCTTTGTATGTTTGA-CCCTTG-GATGTGGCGGACGATTCCCATGGTGACCTGGATTGGAGGGAAGTTTTTCTAGAATTTGAAGATAAAGCATCTTTCATAAATACTGCCTTTTCCTTCCCAATGACTAGTTAAAAATTAAT----AGTCTGTAAACTAGAGTGAGCGCGATCCCTGAACCCAAATTCAGGAGGCAGGGTTCGACATGTCTAAATGTACGCAGGGAACAACAGCAAGAAATATTTTAAGCTGAATGAGCCTGAAAAATAAAAGACATAGGATTGTAATAGATACGTCACACTGAAGGCTGTCTTAAATGG-AAATCAACTGAAAAAAAGGGCAAGTTTGGTACGCACTAGGTTTACTCTGGGCTAAGGCCGGTCTAGGACATTCA-TGAAATTACAACTTAGTGATTAGGGGCTATAGTGGTTTAGATTCTAGACTTTAGAAGTATTTACACATCAAAAAACTCATGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223572054 904 - 227556264 GTCAACAGGGAAGAGCGAGTCAGTGCTTGCAGGGCTGGGGCTCCTGGCCTGTGGG-TAAGGAG----------------GACTGAGACTCCCC---TAGGCCTGATGGGACTGCAGTAGGGTGAGGCTGGGCTGGCCTGCCCTCAGCT---TGCAAGCCTGTTGTTGAGCAGCTGTTCTCCACGTTGGTAGCTGTGGAGTATATTCTAATCTAGCTTCTGAAAAGGCTTGCATAGCTACCATTGAAAGAACTCCTACTTACTGTATTTCAACTGGAGAATTACAGAGAGAAAA-GGTTCAAGTGGCCTATTGTAGGTCATCTCCCACTCTGGGATTTAAACAAAGCACAAACAGAACAAAGTTCCTTTAAACCGGGTGCCTTCATCTGAGTCCCTCCTGTCTGCGGGGGTTGGCAGGCTCGCTGGATGCAG----AGCCCACGCCTCTCATGCTCACTGCTGCCTTTGTATGTTTGA-CCCTTG-GATGTGGCGGACGATTCCCATGGTGACCTGGATTGGAGGGAAGTTTTTCTAGAATTTGAAGATAAAGCATCTTTCATAAATACTGCCTTTTCCTTCCCAATGACTAGTTAAAAATTAAT----AGTCTGTAAACTAGAGTGAGCGCGATCCCTGAACCCAAATTCAGGAGACAGGGTTCGACATGTCTAAATGTACGCAGGGAACAACAGCAAGAAATATTTTAAGCTGAATGAGCCTGAAAAATAAAAGACATAGGATTGTAATAGATACGTCACACTGAAGGCTGTCTTAAATGG-AAATCAACTGAAAAAAAGGGCAAGTTTGGTACGCACTAGGTTTACTCTGGGCTAAGGCCGGTCTAGGACATTCA-TGAAATTACAACTTAGTGATTAGGGGCTATAGTGGTTTAGATTCTAGACTTTAGAAGTATTTACACATCAAAAAACTCATGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16623154 904 - 220367699 GTCAACAGGGAAGAGCAAGTCAGTGCTTGCAGGGCTGGGGCTCCTGGCCTGTGAA-TAAGGAG----------------GGTTGAGACTCCCC---TAGGCCTGATGGGACTGCAGTAGGGTGAGGCTGGGCTGGCCTGCCCTCAGCT---TGCAAGCCTGTTGTTGAGCAGCTGTTCTCCACGTTGGTAGCTGTGGAGTATATTCTAATTTAGCTTCTGAAAAGGCTTGCATAGCTACCATTGAAAGAACTCCTACTTACTGTATTTCAACTGGAGAATTACAGAGAGAAAA-GTTTCAAGTGGCCTATTGTAGGTCATCTCCCACTCTGGGATTTAAACAAAGCACAAACAGAACAAAGTTCCTTTAAACCGGGTGCCTTCATCTGAGTCCCTCCTGTCTGCGGGGGTTGGCAGGCTCGCTGGATGCAA----AGCCCACGCCTCTCATGCTCACTGATGCCTTTGTATGTTTGA-CCCTTG-GATGTGGCGGACGATTCCCATGGTGACCTGGATTGGAGGGAAGTTTTTCTAGAATTTGAAGATAAAGCATCTTTCATAAATACTGCCTTTTCCTTCCCAATGACTAGTTAAAAATTAAT----AGTCTGTAAACTAGAGTGAGCGCGATCCCTGAACCCAAATTCAGGAGACAGGGTTCGACATGTCTAAATGTACGCAGGGAACAAcagcaagaaatattttaagctgaatgagcctgaaaaataaaagacataggaTTGTAATAGATATGTCACACTGAAGGCTGTCTTAAATGG-AAATCAACTGaaaaaaaGGGCAAGTTTAGTACGCACTAGGTTTACTCTGGGCTAAGGCCGGTCTAGGACATTCA-TAAAATTACAACTTAGTGACTAGAGGCTATAGTGGTTTAGATTCTAGACTTTAGAAGTATTTACACATCAAAACACTCATGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82420835 903 + 85787240 GTCAACAGGGAAGAGCAAGTCAGTGCTTGCAGGGCTGGGGCTCCTGGCCTGTGGG-TAAGGAG----------------GGTTGAGACTCCCC---TAGGCCTGACGGGACTGCAGTAGGGTGAGGCTGGGCTGGCCTGCCCTCAGCT---TGCAAGCCTGTTGTTGAGCAGCTGTTCTCCACGTTGGTAGCTGTGGAGTATATTCTAATTTAGCTTCTGAAAAGACTTGCATAGCTACCATGGAAAGAACTCCTACTTACTGTATTTCAACTGGAGAATTACAGAGAGAAAA-GGTTCAAGTGGCCTATTGTAGGTCATCTCCCACTCTGGGATTTAAACAAAGCACAAACAGAACAAAGTTCCTTTAAACCGGGTGCCTTCATCTGAGTCCCTCCTGTCTGCGGGGGTTGGCAGGCTCGCTGGATGCAG----AGCCCACGCCTCTCATGGTCACTGCTGCCTTTGTATGTTTGA-CCCTTG-GATGTGGCGGACGATTCCCATGGTGACCTGGATTGGAGGGAAGTTTTTCTAGAATTTGAAGATGAATCATCTTTCATAAATACTGCCTTTTCCTTCCCAATGACTAGTTAAAAATTAAT----AGTCTGTAAACTAGAGTGAGCGCGATCCCTGAACCCAAATTCAGGAGACAGGATTTGACATGTCTAAATGTACGCAGGGAACAAGAGCAAGAAATGTTTTAAGCTGAATGAGCCTGAAAAATAAAAGACATAGGATTGTTATAGATATGTCACACTGAAGGCTGTCTTAAATGG-AAATCAAATG-AAAAAAGGGCAAGTTTGGTAGACACTAGGTTTACTCTGGGCTAAGGCTGGTCTAGGACATTCA-TGAAATTACAACTTAGTGATTAGGAGCTATAGTGGTTTAGATTCTAGACTTTAGAAGTATTTACACATCAAAAAACTCATGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14101946 870 - 49578535 GTCATCAGGGAGTAGAGAGTTAGCACTTTCAGGGCTGGGGCTCCTGGCCTGTGGGCTAAGCAA----------------GACTGGGGCTCCCT---TAGGCCTGGTGGGGCTGCAGTAGGGAGAGGCTGGACTGGCTTGCCCTCAGCT---CGAAAGCCTGTTGTTGAGCTCCTGTTCTCCACATTGGTAGCTGTGGAG--TATTCTCATTTAGCTTCTG-AAAGGCATGCATAGCTGCTATTGAAAGAACTCCCACATACTGTATTTCAGCTGGAGAATTACAGAGAAAAAA-GGTTCAAGTGGCTTATTGTAGGTCATCTCCCACTCTGGGATTTAAACAAAGCACAAACAGAACAAAGTT---------------CCTTCATCTGAGCCCCTCCTGTCTGC-GGGTCTGGCAGGCTTGCTGGATACAG----AGCCCACGCCTCTCATTCCCACTGCCGCCTTTTTATGTCTGA-CCCTTG-GATGTGGCAGGCGATTCCCATGGTGGCCTGGATTGGAGGGAAGGTTTTCTAGAATTTGGAGATAAAGCATCTTTCATAAATACTGCCTTTTCCTTCCCGATGACTGGTTACAAACTGAC----GGTTTGTGAACTAGAGTGAGCGCGATCCctgaacccaaa-tcaggatgcagggttggacatgtgtaaatgca--caggggacaatagc-agacatattttaaGCTGAATGAGCCTGAAAAATAAAACACATAGGATTGTTGTAGATACGTCACACTGAAGGCTGTCTCAGACGG-GAATCAACTG-AAAAAAGGG-AAGCTTGGTACACACTAGGTGTACGCTGGGCT-AGCTCGGTCTAGGACATTAA-TGAAATCACAACATAGTGAT---------TAGTGGTTTCAATTCTAGGCTCTAGAAGTGTTTACACATCAAAAAACTCACAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178700265 874 + 195471971 GTCTGCAGGG--GAGAGGGGCGGAGCTCGCTGGGCTCATGCTCCTGGCA-GTGGG-CTGGGAA----------------GGTGGGG-----------AGGCCT----------CAGAGGGGTGAGGATGGGGAGGGTAGCCATTAAATCTCTGCAGG-TTGTTGTTGGGCAGCCCCACTCCTCATTCGTAGCTGTGCAG--CATTCAGATTTGGCCTCTGAAAAGGCTT-CATAACTGCCACTGAAAGAACTCCCACATACTGTATTTCAACCAGAGAATTACAGAGAGAAAAGGGTTCAAGTGGCTTATTGTGGGTCATCTCCCACTCTGGGATTTAAACAAAGCGCACACAGAACAAAGTTCCTTTAGCTCTGGTGCCTTCATCTGAGTCTCCCCTGTCTGCAGGACTTGGCAGGCTTTCTGGACGGAG----AGCCCACGCCTCTCATTCCCACTACCGTCCTTTCATGCTTGACCCCTCG-AATGTGGCAAAGGATCCCTGTGGTGACCTGGATTGGAGGGAGGTTCCTCTAGAATTTGAAAATAAAGCATCCTCCATAAACACAGCCAGTTCCTTCCTAATGACGAGTTGAAAATCGCT----CGTGCATAATCTAG-GTGAACACAGTTCCTGCACTGACATTTAGG-GACAGGATTTGACATGTGAAAATGGACTTGG----TAATAGCAAGATGTATTTTAAATTGCATGAACTTCGGA-ATGAAAGACAAAGGATTATTGTAGGCATATAATGCTGCAGGCTACCCTAG-----AAATGGACGGAGAAACTGGGCCAGCGTGGTGCGTGCTGAGTTCATTGTGGGATAAGCTCTCTCTGAAGCATTAAGTTGAAGGACAGCCCAGTCCCTAGAGACTGTGATGGGCTAGACTCTAGACATCGGAAGTTCTTAAACGTTGGAACTCTCATGG i mm10.chr1 C 0 I 933 s canFam3.chr7 36281459 906 + 80974532 GTCAACGGGGAAGAG-GTTTCGGGTCTCTCAGGGCCAGGGCTCCTGGCCCACTGG-CTAGCAGTGGTACCAGGGCTGCCTGCTGAGAAGCCCCAGGAAAGCCTGGCCAGAACAGAGTGGCATGAGGCTGGTGGGGGCTGCCAGCAGAT----------CTGCTATGGAGCGGTGACACTCCCAATCAGTAACCACAGAG--TATTCAAATTTAGTTTCTGAAAAGGCCTGCATAGATGCTTTTGAAAGAACTCCCACATACTGTATTTCAGCTGGAGACTTGCAGAGAGAAAG-GGTTCAAGTGGCTTATTGTGGGTCATCTCCCACTCTGGGATTTAAACAAAGCACAAACAGAACAAAGTTCCTTTAAACTGGGTGCCTTCATCTGAGTCCCTCCTGTCTGT--GGTTTGGCAGGCTGGCTGGATGGAGAGCAAGCCCACGCCTCTCATTCCCACCACTGCCTTTTCATGTTTGA-CCCTTGAGATCTGGCGAATGATCCCCACAGTGGCCTAGAGTGGAGGCAAGTGTTTCTAGAATTTGAAGATAAAGCATCTTTCTTAAATCCTGCCTTTTCCTTCCCTATGACTAGTTAATAATTGAGAGTAAGTCTGTAATCTACAGTGAGTATGATTCCTGGACCACAATCTAGGAGACAGGATGTGACACATATCGACCTA--CTGAGGACAGTAGCAAGAAATATTCTGAATTGTGTGGGGCTGCGAAATGCAAGAC----TATGATCACGAATGTGCAGTGCTGGAGACAGTCTTAG-----AACTCAGCTG---CCGTGAGCAGGCAGGGAATATGTCGGGTTCACTCTGGGCTAAGTTCTGTCTGGGACGTTAA-TGAAGTTACCACTAATGATCTGAGGGCTGGAGTGGTCCTGATTCTAGGTGGTGGAAGTACTTTCACATTAGGACACTCATG- i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226203553 620 - 229942017 M a score=99487.000000 s hg38.chr1_KI270759v1_alt 97185 50 + 425601 CTGCGAAGAGTTTTCCTCCTAGCATCTGACACAACTCCTCATTTTG-TAAG s panTro4.chr1 224846066 50 + 228333871 CTGCGAAGAGTTTTCCTCCTAGCATCTGACACATCTCCTCATTTTG-TAAG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140094198 50 - 143122389 CTGCGAAGAGTTTTCCTCCTAGCATCTGACACATCTCCTCATTTTG-TAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16812501 50 - 229590362 CTGCAAAGAGTTTTCCTCCTAGCATCTGACACATCTCTTCATTTTC-TAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223572958 50 - 227556264 CTGCAAAGAGTTTTCCTCCTAGCATCTGACACATCTCTTCATTTTC-TAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16624058 47 - 220367699 CTGCAAGGAGTTTTCCTCCTAGCATCTGACACATC---TCATTTTG-TAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82421738 50 + 85787240 CTGCAAGGAGTTTTCTTCCTAGCATCTGACACATCTCCTCATTTTG-TAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14102816 46 - 49578535 CTGCGAAGAGTTTTCCGCCCAGCATCTGACAT-----CTCATTTTGATAAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36282365 25 + 80974532 -------------------------TTGCTTCATCTCCTCCCCCAG-TGGA i canFam3.chr7 C 0 C 0 e mm10.chr1 178701139 933 + 195471971 I e ponAbe2.chr1 226203553 620 - 229942017 M a score=100947.000000 s hg38.chr1_KI270759v1_alt 97235 31 + 425601 TCTGTACTGGAGTGAATTCTAGACAGCTGGC s panTro4.chr1 224846116 31 + 228333871 TCTATACTGGAGTGAATTCTAGACAGCTGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226204190 30 - 229942017 TCTGTACTGAAGTG-ATTCTAGACAGCTGCC i ponAbe2.chr1 M 620 C 0 s nomLeu3.chr5 140094248 31 - 143122389 TCTGTACTGGAGTGAATTCTAGACAGCTGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16812551 31 - 229590362 TCTGTACTAGAGTGAATTCTAGACAGCTGGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223573008 31 - 227556264 TCTGTACTAGAGTGAATTCTAGACAGCTGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16624105 31 - 220367699 TCTGTACTAGAGTGAATTCTAGACAGCTGgc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82421788 31 + 85787240 TCTGTACTGGAGTGAATTCTAGACAGCTGGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14102862 31 - 49578535 TGTGTACTAGAGTGAAGTCTAGACAGCTGGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36282390 30 + 80974532 TCTGCACTGGAGCC-GTTCCAGAAAGCAGGC i canFam3.chr7 C 0 I 37 e mm10.chr1 178701139 933 + 195471971 I a score=1022123.000000 s hg38.chr1_KI270759v1_alt 97266 349 + 425601 TTGTTGTAtttatttttatttttagaaatggggtctcactctg-ttgcccatgctggagtgcagaggt-gcaatcgtagctcactgtggccttgaactcctgggctcaaatgatcctcctgcctcagcctccccagtagctgggactacaggtgtgcaccaccatgtctggctaatttttaaaaaaa-ttttttgtagagatggggtcttgctatgctgcccaggctggacttgaactcctaggctcaagtgatcctcctgcctcagcctcccaagtagttgggactacaggGACACACCACCCTGCCGAGCTTGACTAGTTATATTGTTCTTAAAGGTTTATAGAAGGAAG s panTro4.chr1 224846147 350 + 228333871 TTGTTGTAtttatttttatttttagaaatggggtctcactctg-ttgcccatgctggagtgcagaggt-gcaatcgtagctcactgtggccttgaactcctgggctcaaatgatcctcctgcctcagcctccccagtagctgggactacaggtgtgcaccaccatgtctggctaatttttaaagaaatttttttgtagagatggggtcttgctatgctgcccaggctggacttgaactcctaggctcaagtgatcctcctgcctcagcctcccaagtagttgggattacaggGACACACCACCCTGCCGAGCTTGACTAGTTGTATTGTTCTTAAAGGTTTATAGAAGGAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226204220 347 - 229942017 TTGTCGTAtttatttttatttttagaaatgaggtctcactctg-ttgcccatgctggagtgcaga-gt-gcaaccgtagctcactgcggccttgaactcctgggctcaaatgatcctcctg-ctcagcctccccagtagctgggactacaggtgtgcaccacaatgtctggctaattttttaaaaat-ttttttgtagagatggggtcttgctatgctgcccaggctggacttgaactcctaggctcaagtgatcctcctgcctcagcctcccaaatagttgggactacaggggcacaccaccccgccGAGCTTGACTAATTGTATTGTTCTTAAAGGTTTATAGAAGGAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140094279 349 - 143122389 TTGTTGTAtttatttttatttttagagatggggtctcactctg-ttgcccatgctggagtgcagaggt-gcaatcgtagctcactgtggccttgacctcctgggctcaaatgatcttcctgcctcagcctccccagtagctgggactacaggtgtgcaccaccatgtctggctaattttttaaaaaa-atttttgtagagatggggtcttgctatgctgcccaggctggacttgaacttctaggctgaagtgatcctcctgcttcagcctcccaagtagtggggactacaggggcacaccaccctgccGAGCTTGACTAGTTGTATTGTTCTTAAAGGTTTGTAGAAGGAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16812582 348 - 229590362 TTGTTGTAtttatttttatttttagaaatggggtcttgctgta-ttgcccatgctggagtgcagaggt-gcaatcatagctcactgcggccctgaactcctgggctcaaatgatcctcctgcctcagcctccccagtagctgggagtacaggtgtgcagcacactgtctggctaatttttaaaaaaa-tttttt-tagagatggggtcttgctatgctgcccaggctgaacttgagctcctaggctcaagtgatcctcttgcctcagcctcccaagtagttgggactacggggccacaccaccctgcTGAACTTGGCTAGTTGTATTGTTCTTAAAGATTTATAGAAGGAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223573039 348 - 227556264 TTGTTGTAtttatttttatttttagaaatggggtcttgctgta-ttgcccatgctggagtgcagaggt-gcaatcatagctcactgcggccctgaactcctgggctcaaatgatcctcctgcctcagcctccccagtagctgggagtacaggtgtgcagcaccatgtctggctaatttttaaaaaaa-tttttt-tagagatggggtcttgctatgctgcccaggctgaacttgagctcctaggctcaagtgatcctcttgcctcagcctcccaagtagttgggactacgggGCCACACCACCCTGCTGAACTTGGCTAGTTGTATTGTTCTTAAAGATTTATAGAAGGAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16624136 348 - 220367699 ttgttgtatttatttttatttttagaaatggggtcttgctata-ttgcccatgctggagtgcagaggt-gcaatcatagctcactgcggccctaaactcctgggctcaaatgatcctcctgcctcagcctccccagtagctgggagtacaggtgtgcaccaccatgtctggctaatttttaaaaaaa-tttttt-tagagacggggtcttggtatgctacccaggctgaacttgaactcctagactcaagggatcctcctgccccagcctcccaagtagttgggactacgggGGCACACCACCCTGCTGAACTTGGCTAGTTGTATTGCTCTTAAAGATTTATAGAAGGAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82421819 349 + 85787240 TTGTTGTAtttatttttatttttagaaatggggtcttgctgtatttgcccatgctagactgcagaggt-gcaatcatagctcactgcggccctgaactcctgggctcaaatgatcctcctgcctcagcctccccagtagctgggagtacaggtgtgcaccaccatgtctggctaatttaaaaaaata-tttttt-tagagatggggtctttctgtgctgcccaggctgaacttgaactcctaggctcaagtgatcctcctgcctcagcctcccaagtagttgggactacgggggcacaccaccCTGCTGAACTTGGCTAGTTGTATTGTTCTTAAAGATTTATAGAAGGAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14102893 350 - 49578535 GTGTTGTAtttatttttatctttagaaatggggtcttgctctg-ttgcccatgcttgtgtgcagaggtaacaatcatagctcactgcggccttcaactcctgggctcaggtgatcctcctgcctcagcctccccagtagctgggattacagatgtgtgtcaccatgtctggctaattttttcaaaac-ttctttgtaggggtggggtcttgctatgctacccaggagggactcaaactcttaggcccaagtgatcctccttcctcagcctgccaagctgtgggcactacaggagcacaccaccctgcccagcTTGGCTCGTTGTATTGTTCTTAAAGGTTTGTAGAAGGAAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178701139 933 + 195471971 I e canFam3.chr7 36282420 37 + 80974532 I a score=116133.000000 s hg38.chr1_KI270759v1_alt 97615 37 + 425601 GAGCTTCTGTAGCCTCCAAC--CCCATTTTTCGGATGCG s panTro4.chr1 224846497 37 + 228333871 GAGTTTCTGTAGCCTCCAAC--CCCATTTTTCGGATGCG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226204567 37 - 229942017 GAGCTTCCGTAGCCTCCAAC--CCCATTTTTTGGATGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140094628 37 - 143122389 GAGCTTCCGTAGCCTCCAAC--CCCGTTTTTTGGATGCG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16812930 37 - 229590362 GAGCTTCCATAGCCTCCAAC--CCCACTTTTTGGATGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223573387 37 - 227556264 GAGCTTCCATAGCCTCCAAC--CCCACTTTTTGGATGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16624484 37 - 220367699 GAGCTTCCATAGCCTCCAAC--CCCACTTTTTGGATGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82422168 37 + 85787240 GAGCTTCCATAGCCTCCAAC--CCCACTTTTTGGATGCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14103243 36 - 49578535 AAG-TTCCATAACCCCCAGC--CCCACTTTTTGGATGTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36282457 39 + 80974532 GAGCATCTATAACTCCCAGCAGCCCCCTTTTGGCATGTG i canFam3.chr7 I 37 C 0 e mm10.chr1 178701139 933 + 195471971 I a score=720582.000000 s hg38.chr1_KI270759v1_alt 97652 231 + 425601 TTCCTTTAAGGACTAATCCAATTTGAGGTTCTTTATTC----TATTTCCTCAGTGGGCATGTTTACTGATCCTCAAATGTGCCTTTATATATTTCATAAGCTGTTTCTTTGCATTCTTTCCCCCAAAGGAGTAGTTTCCATTCTTTCTGAAAAACACTGCTTGAGCCTCGTCCCTTTTGGAAGAGCAGTTCTGGG--------------gtgtgtgtgtgtgcgcgcgcatgtg------------------------------------tgtgtgtccacgtgc s panTro4.chr1 224846534 233 + 228333871 TTCCTTTAAGGACTAATCCAATTTGAGGTTCTTTATTC----TATTTCCTCAGTGGGCATGTTTACTGATCCTCAAATGTGCCTTTATATATTTCATAAGCTGTTTCTTTGCATTCTTTCCCCCAAAGGAGTAGTTTCCATTCTTTCTGAAAAACACTGCTTGAGCCTCCTCCCTGTTGGAAGAGCAGTTCTGGG------------gtgtgtgtgtgtgtgcgcgcgcatgtg------------------------------------tgtgtgtccatgtgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226204604 210 - 229942017 TTCCTTTAAGGACTAATCCAATTTGAGGTTCTTTATTC----TATTTCCTCAGTGGGCATGTTTACTGATTCTCAAATGTGTCTTTATATATTTCATAAGCTATTTCTTTGCATTCTTTCCCCCAAAGGAGTAGTTTTCCTTCTTTCTGAAAAACACTGCTTGAGCCTCCTCCCTGTTGGAAGAGCAGTTACGGG------------GGGGgtgtgtgtgtgtgtg----------------------------------------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140094665 239 - 143122389 TTCCTTTAAGGACTAATCCAATTGGAGGTTCTTTGTTC----TAGTTCCTCAGTGGGCATGTTTACCGATTCTCAAACGTGTCTTTATATAGTTCATAAGTTATTTCTTTGCATTCTTTCCCCCAAAGGAGTAGTTTTCATTCTTTCTGAAAAACACTGCTTGAGCCTCTTCCCTGTTGGAAGAGCAGTTCTGGC------gtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtg------------------------------------tgtgtgtccacgtgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16812967 235 - 229590362 TTCCTTTAAGGACTAATCCAACTTGAGATTCTTTATTCTATGTATTTCCTCCGTGGGCATGTTTACTGATTCTTAAATGTGTCTTTGTATATTTCGTAAGCTATTTCTTTGCTTTCTTTCCCCCAAAGGAGTAGTTTTCATTCTTTCTGAAAAACTCTGCTTGGGCCTCCTCCCTGTTGGAAGAGCAGTTCTGGG--------------TTAtgtgtgtgcgtgcgcacatgtg------------------------------------tgtgtgtccacgtgc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223573424 235 - 227556264 TTCCTTTAAGGACTAATCCAACTTGAGATTCTTTATTCTATGTATTTCCTCCGTGGGCATGTTTACTGATTCTTAAATGTGTCTTTGTATATTTCGTAAGCTATTTCTTTGCTTTCTTTCCCCCAAAGGAGTAGTTTTCATTCTTTCTGAAAAACTCTGCTTGGGCCTCCTCCCTGTTGGAAGAGCAGTTCTGGG--------------TTAtgtgtgtgcgtgcgcacatgtg------------------------------------tgtgtgtccacgtgc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16624521 234 - 220367699 TTCCTTTAAGGACTAATCCAACTTGAGGTTCTTTATTCTATGTATTTCCTCCGTGGGCATGTTTACTGATTCTTAAATGTGTCTTTGTATATTTCGTAa-ctatttctttgctttctttcccccaaaggagtagttttcattctttctgaaaaactctGCTTGGGCCTCCTCCCTGTTGGAAGAGCAGTTCTGGg--------------gtatgtgtgtgcgtgcgcacatgtg------------------------------------tgtgtgtccacgtgc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82422205 235 + 85787240 TTCCTTTAAGGACTAATCCAATTTGAGGTTCTTTATTCTATGTATTTCCTCAGTGGGCATGTTTACTGATTCTCAAATGTGTCTTTGTGTATTTCGTAAGCTATTTCTTTGCTTTCTTTCCCCCAAAGGAGTAGTTTTCATTCTTTCTGAAAAACTCTGCTTGAGCCTCCTCCCTGTTGGAAGAGCAGTTCTGGG--------------GTATGTGTGTGCGTGCGCACGTGCG------------------------------------TGTGTGTCCACGTGC i chlSab2.chr25 C 0 I 1255 s calJac3.chr19 14103279 284 - 49578535 TTCCTTTAAGGACTAATCTAATTTGAGGTTCTTTATTCTATGTATTTCCTCAGTGGGCATATTTACTGATTCTCAAATGTGTCTTTCTATATTTCATAAGCTATTTCTTTGCATTCTTT-CCCCAAAGGCATAGTTTTCATTCTTTCTGAACAACACAAATTGAGCCTCCTCCCTGTTGAAAGAGCAGATCTGAtgtctgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcatgggtgtgggtgcatgcatgggtgtgtgccagcatgtgtgtgtgcgtgc i calJac3.chr19 C 0 C 0 s mm10.chr1 178702072 191 + 195471971 TTCCTTGAAGAGCTAGTCTA---TTAGGTCCTTTACTCTCTATGTTCCCATAGTAGACCTGTTTACTGACTCTCAGATGTGTCTTTGTGTATTTTA-GATATATTTCTTAGTGTCCATTTCCCC--------------------TTGTCAA-----------GGACTTATGTCCTGCACAAAGAATA--TCTTAG--------------GTATGCTCATGTGTGTGCATGTATA------------------------------------GATGTGTA------- i mm10.chr1 I 933 C 0 s canFam3.chr7 36282496 181 + 80974532 CTCCTTTTAGGACTGTTCTAATCTGAGGTTCTTTGTACTACATATTTCCTCCGTGGACCTGTTTATTGATTCTCACATGTGCC-TTGTGCATTCTGTAAGTTGTTTTTTGGCATTGTTTCTC---------------------------AAAGACACTGCTTGAGC--------------------------AGG--------------gtgtgtgtgtgtgtgtgtgtgtgtg------------------------------------tgtgtgtACCCATGC i canFam3.chr7 C 0 C 0 a score=10740.000000 s hg38.chr1_KI270759v1_alt 97883 52 + 425601 ----atgcgtgtgtgtgcatggg-gggtgtgtgtctgcat--gcctgtg-tgtgtccac--g s panTro4.chr1 224846767 54 + 228333871 ----atgcgtgtgtgtgcatggg-gggtgtgtgtctgcat--gcctgtg-tgtgtccacatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226204814 52 - 229942017 -----tgcatgtgtgtgcatggg-ggg-gtgtgtctgcat--gcctgtg-tgtgtccacatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140094904 53 - 143122389 ----atgcgtgtgtgtgcatggg-ggg-gtgtgtctgcat--gcctgtg-tgtgtccacatg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16813202 31 - 229590362 ----acgtgtgtgtgtgaatgg------gtgtg------------tgtg-tgta-------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223573659 31 - 227556264 ----acgtgtgtgtgtgaatgg------gtgtg------------tgtg-tgta-------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16624755 31 - 220367699 ----acgcgtgtgtgtgaatgg------gtgtg------------tgtg-tgtg-------- i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14103563 57 - 49578535 ----atgggtgtgtgtgcatgaatgggtgtgtgcgcgcatgggtgtgtg-tgtgtgtgcatg i calJac3.chr19 C 0 I 17 s mm10.chr1 178702263 46 + 195471971 -------CGTGTGTGTGCATC-------ATGTGCATGCAC--CTCTTTGCTTTGATTTCATT i mm10.chr1 C 0 C 0 s canFam3.chr7 36282677 33 + 80974532 ATGCACACATGCCCACACATGC------ATACACTCACA----------------------- i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82422440 1255 + 85787240 I a score=2146291.000000 s hg38.chr1_KI270759v1_alt 97935 643 + 425601 tgtgtgtgtTT-CTTTGGCCTCCTCTCAGGCTCTGGGGGAAAAAAACCTCTACTAAATCTTAAGCTAAGTACAAAATGTGTGCA-----TGTT------TCACTCTTGCCAACGTTTTAGACTT---CTGGTGTTAAGCCCTGTGGAAATGCAAATAGCATAGTTTTTAATACTTACTCTAAGGGTACTATTTAGGGAAGTA--AAAGTTACTCTAAAGGCAAGATTGATTTCCTGCCCTCATGGAACTGACCTTTCATAATAGATAGCTTGTTGTCCATGCTAACAAGGGCTTACTACAAGTGCTACGTATTCTCAATTTGTATCAAAAATTGTAGTTTGGGGCCACTGGCTTCTTTTTGGAGATGGCCTGATTGATTCCAGACTCTGGATCTGAGAAGCTGACGGT--TTTGTACCATTGCCCTACACACATGGAAACACTGCAGACTTCAAAGTTCCTTTGTTTTAAGTGCGGTGGAATCATAGTTGAGGGGACAGTGAAGGA---AGAGGACA----GACTGAGCTGAGGTGT---TGTTGCTGCTTTCTCTCAAAAGGTTGTTAAGAG-ATCATTC-ATTTTTGAGGAATTGCAACAAGACTGATTTTTTTTTTTTTTT---------------------------ATAAAGCGTA-GAGTCTTTTAACTCAGGATTAGATGAATAGCTTTTCAAAT s panTro4.chr1 224846821 638 + 228333871 tgtgtgtgtTT-CTTTGGCCTCCTCTCAGGCTCTGGGGG-AAAAAACCTCTACTAAATCTTAAGCTAACTACAAAATGTGTGCA-----TGTT------TCACTCTCGCCAACGTTTTAGACTT---CTGGTGTTAAGCCCTGTGGAAATGCAAATAGCATAGTTTTTAATACTTACTCTAAGAGTACTATTTAGGGAAGTA--AAAGTTACTCTAAAGGCAAGATTGATTTCCTGCCCTCATGGAACTGACCTTTCATAATAGATAGCTTGTTGTCCATGCTAACAAGGGCTTACTACAAGTGCTATGTATTCTCAATTTGTATCAAAAATTGTAGTTTGGGGCCACTGGCTTCTTTTTGGAGATGGCCTGATTGATTCCAGACTCTGGATCTGAGAAGCTGACGGT--TTTGTACCATTGCCCTACACACATGGAAACACTGCAGACTTCAAAGTTCCTTTGTTTTAAGTGCGGTGGAATCATAGTTGAGGGGACAGTGAAGGA---AGAGGACA----GACTGAGCTGAGGTGT---TGTTGCTGCTTTCTCTCAAAAGGTTGTTAAGAG-ATCATTC-ATTTTTGAGGAATTGCAACAAGACTGA-----TTTTTTTTAT---------------------------ATAAAGCGTAGGACTCTTTTAACTCAGGATTAGATGAAAAGCGTTTCAAAT i panTro4.chr1 C 0 I 775 s ponAbe2.chr1 226204866 642 - 229942017 tgtgtgtgtTT-CTTTGGCCTCCTCTCAGGCTCTGGGGGAAAAAAACCTCTACTAAATCTTAAGCTAACTACAAAATATGTACA-----TG-T------TCACTCTTGCCAACGTTTTAGACTTCTGCTGGTGTTAAGTCCTGTAGAAATGCAAATAGCATAGTTTTTAATACTTACTCCAAGGGTACTATTTAGGGAAGTA--AAAGTTACTCTAAAGGCAAGACTGATTTCCTGCCCTCATGGAACTGACCTTTCATAATAGATAGCTTGTTGTCCATGCTAACAAGGGCTTACTCCAAGTGCTATGTATTCTCAATTTGTATCAAAAATTGTAGTTTGGGGCCACTGGCTTCTTTTCGGAGATGGCCTGATTGATTCCAGACTCTGGATCTGACAAGCTGATGGT--TTTGTATCATTGCCCTACACACATGGAAACACTGCAGACTTCAAAGTTCCTTTGTTTTAAGTGTGGTGGAATCATAGTTGAGGGGACCGTGAAGGA---AGAGGACA----GACTTAGCTGAGGTGT---TGTTGCTGCTTTCTCTGAGAAGGTTGTGAAGAG-GTCATTC-ATTTTTGAGGAATTGCAACAAGACTGA---TTTTTTTTTTTT---------------------------GTGCAGCGTA-GAGTCTTGTAACTCAGGATTAGATGAATAGCTTTTCAAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140094957 638 - 143122389 cgtgtgtgtTT-ATTTGGCCTCCTCTCAGGCTCTGGGGG-AAAAAACCTCTACTAAATCTTAAGCTAACTACAAAATGTGTACA-----TGTT------TCACTCTTGCCAACGTTTTAGACTTCTGCTGGTGTTAAGCCCTGTAGAAATGCAAATAGCATAGTTTTTAATACTTACTCCAAGGGTACTGTTTAGGGAAGTA--AAAGTTACTCTAAAGGCGAGATTGATTTCCTGCCCTCATGGAACTGACCTTTCATAATAGATAGCTTGTTGTCCATGCTAATAAGAGCTTACTACAAATGCTATATATTCTCAATTTGTATCAAAAATTGTAGTTTGAGGCCACTGGCTTCTTTTCGGAGATGGCCTGATTGATTCCAGATTCTGGATCTGAGGAGCTGATGGT--TTTGTATCATTGCCCTACACACATGGAAACACTGCAGACTTCAAAGTTCCTTTGTTTTAAGTGCGGTGGAATCACAGTTGAGGGGACAGTGAGGGA---AGAGGACA----GACTTAGCTGAGG------TGTTGCTGCTTTCTCTCAAAAGGTTGTTAAGAG-ATCATTC-ATTTTTGAGGAATTGCAAC--GACTGA--TTTTTTTTTTTTT---------------------------ATGCAGCATA-AAGTCTTTTAACTCAGGATTAGATGAATAGCTTTTCAAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16813233 673 - 229590362 tgtgtgtgCTT-CTTTGGCCTCCTCTCAGGTTCTAGGGGGAAAAAACCTCTACCAAATCCTAAGCTAACTACAAAATGTGTACA-----CGTT------TCACTCTTGCCAACGTTGTAGACTTCTGCTGGTGTTAAGCCCTGTAGAAATGCAAATAGCACAGTTTTTAATACTTACTCCAAGGGTACCATTTATGGAAGTA--AAAGTTACTCTAAAGGCAAGATTGATTTCCTGCCCTCATGGAACTGACCTTTCATAATAGATAGCTTGTTGTCCATGCTAATAAGGGCTTACTACAAGTGCAATGTATTCTCAATTTGTATCAAAAATTGTAGTTTGGGGCCACTGGCTTCTTTTCGGAGGTGGCCTGGTTGATTCTAGACTCTGGATCTGAGAAGCTGATGGT--TTTGTATCATTGCCCTACACACGTGGAAACACTGCAGACCTCAAAGTTCCTTTGTTTTTAGAGCGGTGGAATCATGGTTGAGGGGACAGTGAAGGA---AGAGGACA----CACTTAGCTGAGGTGT---TGTTGCTGTTTTCTCTCAAAACGTTATTAAGGG-ATCATTC-ATTTTTGAGGCATTACAACAAGACtgttttttttgtttttttttgtttttttgttttttgtttttttAAATGCAGCATA-GAGTCTTTTAACTCAGGATTAGATGAATAGCTTTTCAAGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223573690 673 - 227556264 tgtgtgtgCTT-CTTTGGCCTCCTCTCAGGTTCTAGGGGGAAAAAACCTCTACCAAATCCTAAGCTAACTACAAAATGTGTACA-----CGTT------TCACTCTTGCCAACGTTGTAGACTTCTGCTGGTGTTAAGCCCTGTAGAAATGCAAATAGCACAGTTTTTAATACTTACTCCAAGGGTACCATTTATGGAAGTA--AAAGTTACTCTAAAGGCAAGATTGATTTCCTGCCCTCATGGAACTGACCTTTCATAATAGATAGCTTGTTGTCCATGCTAATAAGGGCTTACTACAAGTGCAATGTATTCTCAATTTGTATCAAAAATTGTAGTTTGGGGCCACTGGCTTCTTTTCGGAGGTGGCCTGGTTGATTCTAGACTCTGGATCTGAGAAGCTGATGGT--TTTGTATCATTGCCCTACACACGTGGAAACACTGCAGACCTCAAAGTTCCTTTGTTTTTAGAGCGGTGGAATCATGGTTGAGGGGACAGTGAAGGA---AGAGGACA----CACTTAGCTGAGGTGT---TGTTGCTGTTTTCTCTCAAAACGTTATTAAGGG-ATCATTC-ATTTTTGAGGCATTACAACAAGACtgttttttttgtttttttttgtttttttgttttttgtttttttAAATGCAGCATA-GAGTCTTTTAACTCAGGATTAGATGAATAGCTTTTCAAGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16624786 646 - 220367699 tgtgtgtgctt-ctttGGCCTCCTCTCAGGCTCT-GGGGGAAAAAACCTCTACTAAATCCTAAGCTAACTACAACATGTGTACA-----TGTT------TCACTCTTGCCAACGTTGTAGACTTCTGCTGGTGTTAAGCCCTGTAGAAATGCAAATAGCACAGTTTTTAAGACTTACTCCAAGGGTACCATTTATGAAAGTA--AAAGTTACTCTAAAGGCAAGATTGatttcctgccctcatggaactgaCCTTTCATGATAGATAGCTTGTTGTCCATGCTAATAAGGGCTTACTACAAGTGCAATGTATTCTCAGTTTGTATCAAAAATTGTAGTTTGGGGCCACTGGCTTCTTTTCGGAGGTGGCCTGGTTGATTCCAGACTCTGGATCTGAGAAGCTGATGGT--TTTGTATCATTGCCCTACACACGTGGAAACACTGCAGACCTCAAAGTTCCTTTGTTTTTAGAGCGGTGGAATCATGGTTGAGGGAACAGTGAAGGA---AGAGGACA----CACTTAGCTGAGGTGG---TGTTGCTGTTTTCTCTCAAAACGTTGTTAAGGG-ATCATTC-ATTTTTGAGGCATTACAacaagactgattttttttttttttt--------------------------aatgcagcatA-GAGTCTTTTAACTCAGGATTAGATGAATAGCTTTTCAAGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82423695 645 + 85787240 TGTGTGTGCTT-CTTTGGCCTCCTCTCAGGCTCTGGGGGAAAAAAACCTCTACTAAATCCTAAGCTAACTATAAAATGTGTACA-----CGTT------TCACTCTTGCCAACGTTTTAGACTTCTGCTGGTGTTAAGCCCTGTAGAAATGTAAATAGCACAGTTTTTAATACTTACTCCAAGGGTACTATTTATGGAAGTA--AAAGTTACTCTAAAGGCAAGATTGATTTCCTGCCCTCATGGAACTGACCTTTCATAATAGATAGCTTGTTGTCCATGCTAATAAGGGCTTACCACAAGTGCAATGTATTCTCAATTTGTATCAAAAATTGTAGTTTGAGGCCACTGGCTTCTTTTCGGAGATGGCCTGGTTGATTCCAGACTCTGGATCTGAGAAGCTGATGGT--TTTGTATTGTTGCCCTACACACGTGGAAACACTGCAGACCTCCAAGTTCCTTTG-TTTTAGAGCGGTGGAATCATGGTTGAGGGGACAGTGAAGGA---AGAGGACA----CACTTAGCTGAGGTGT---TGTTGCTGTTTTCTCTCAAAACGTTGTTAAGGG-ATCATTC-ATTTTTGAGGCATT---ACAAGACTGAttttttttttttttttt------------------------AATGCAGCGTA-GAGTCTTTTAACTCAGGATTAGATGAATAGCTTTTCAAGC i chlSab2.chr25 I 1255 C 0 s calJac3.chr19 14103637 623 - 49578535 tgtgtgtgtTT-CTTTGGCCTCC---CAGGCTCTAGTGGGGAAAAACCTCTACTAAGTCTTAAGCTAACTACAAAACGTGTGCA-----TGTT------TCACTCTTGCCAACGTTTTAGAATTCTGCTGGTGGTGAGCCCCAAAGAAATGCAAATAGCCTAGTTTTCAATACTGTCTCCAAGGGTACTATTTAGGGAAGTA--AACATCCCTCTAAAGGCAAGATTGATTTCCTGCCCTCATGGAACTGACCTTTCAGAGTGGGTATCTTGTTGTCCATGCTAACATGGGCTTACTGCAAGTGTTACGTATTCTCAGTTTGTATCAAAAATTGCAGTTTGGGGCCACTGGCTTCTTCTCGGAGATGGCCTGGTTGATTCCAGACTCTGGACCTGAG-AGCTGCTGGT--TTTGTATCATTGCCCTACATACGTGGAA--ACCGCAGACCTCAACGTTACTTTAC-----GAGTGGTAGAATCGTGGTTTAGGGGATAGTGTAGGA---A-AGGACA----GACTTAGCTGAGATGT---TGCTGCT-TTCTCTCTCAAAAGGTTGTTAAGAG-ACAATTC-ATTTTTGAGAAATTTCGACGAGACTGA---------TTTTTT--------------------------AAAAATGCATA---GTCTTTTAACTCAGGATTAGATGAATAGCTTTTCAAGT i calJac3.chr19 I 17 C 0 s mm10.chr1 178702309 588 + 195471971 ------TTTTT-TTTTTGCT---------------GTAGTCAAAA---CTTGCTAAATCTT----TAACTATAAAATGGACACACCTGTTGAT------TTATTCTTGCCCAATTTCTGTGATTCTGTTAGTGATAAGCCTTCTAGAAATTTAAACAGCTCAGTTTTCAATTCTTTTGTCAAGAAGACTGTTTAAGGTAATA--AAGCTTACTCCA-----------------CTAGGTTCATGGACATGACCTTCCAAAGTGAAGAAATTGCTGTCCA--CTGGGGAAAGGTTACTACAAGTGGGA-GTA-TCTTTGTCTGTTCTGAAAATCGTAGCTTTTGG-CACGGGTTTCTT-TCTGAGATGGCCTGGTTGATTCCAGGCCTTGGATGT-AGGAACTGAGACCTATTTGTATGATTACCCCACATATATGGAAACAGCACAGCCTCTACAATTGCTTTCTGTTGAG---GATACGGTCATGGTTTGTAGGTTGGCATGGGAGTGAGATGATA----GGTTTAGTTGAGATAT---TGTTGCT---CTCTTAGAAAAGATTATTAAAGA-AATAACT-GTTTGGGGTCAACTCCAGCAAGACTGA---------GTTTCA--------------------------AATGCAGTGTA---GTCTTTTAACTGAGGCGCGGATGAATAGCTTTTCAAGT i mm10.chr1 C 0 C 0 s canFam3.chr7 36282710 617 + 80974532 --TTTGTGTTTACTTTGGTCTCATCTTAGGCTCTGAGAGGAAAACAG-TGTACTAAATC--AGGCTAACCATGAAATGCTTATG-----TGTTGTTTTGCTCTTCTTGCCCATGTTTTATGAACCTGCTGGTGGTTAGCCCCATGGAGAGTCACATAGCAGAGTTTCC-ATACTTATGCCAAGAG--------GGAGGAGCAGTAAAGTAACTCCAAGGGCAAGCTTTATCTCCTGCCTTTGTGGAAAAGACCTTCCAGAATGGCTGTGTTGCTGTCCATGCTAACAAAGGGGTAACACAATTTCTAAGTAGTCTCGATTTGTGGTGAAAATTATAGCTGTGGGCCACCAGCTTCTT-TCTGAGATGGCCTGTCTGATTCCCTGCTCTGGACCTGAGACTCTGGGTGT-GTTTGTAT------------------GAAGCCTTGCAGACTTCCAA-TGACTTTGTGTGAAG---GGCAGAGTCAGGGTCTAGGGAGT--TGAGGAA---AGACGACAGATGGACTTAGCTGAGATGTGGATGTCGTCGCCTTCTCTCAAGAGGTTGTTAAGAGAATCACTCAATTTGGGGGGAATTGTGGTGAGACAA----------TTTGTT--------------------------AATACAGCTTA-GAGTCTTTTAACTCAGGATGGGATGAATAGCTTTTCAAGT i canFam3.chr7 C 0 C 0 a score=16005.000000 s hg38.chr1_KI270759v1_alt 98578 3 + 425601 GTG s panTro4.chr1 224848234 3 + 228333871 GTG i panTro4.chr1 I 775 C 0 s ponAbe2.chr1 226205508 3 - 229942017 GTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140095595 3 - 143122389 GTG i nomLeu3.chr5 C 0 M 1548 s rheMac3.chr1 16813906 3 - 229590362 GTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223574363 3 - 227556264 GTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16625432 3 - 220367699 GTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82424340 3 + 85787240 GTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14104260 3 - 49578535 GTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178702897 3 + 195471971 GTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36283327 3 + 80974532 GTG i canFam3.chr7 C 0 C 0 a score=203660.000000 s hg38.chr1_KI270759v1_alt 98581 54 + 425601 TATGAAAGACAAGAATCCCAAAAGATTGGCTCTATTTTAAATAGCAGACTCCAG s panTro4.chr1 224848237 54 + 228333871 TATGAAAGACAAGAATCCCAAAAGATTGGCTCTATTTAAAATAGCAGACTCCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226205511 54 - 229942017 TATGAAAGACAAGAATCCCAAAAGATTGGCTCTATTTTAAATAGCAGACTCCAG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16813909 54 - 229590362 TATGAAAGACAAGAATCCCAAAAGATTGGCTCTATTTTAAATAGCAGACTCCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223574366 54 - 227556264 TATGAAAGACAAGAATCCCAAAAGATTGGCTCTATTTTAAATAGCAGACTCCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16625435 54 - 220367699 TATGAAAGACAAGAATCCCAAAAGATTGGCTCTATTTTAAATAGCAGACTCCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82424343 54 + 85787240 TATGAAAGACAAGAATCCCAAAAGATTGGCTCTATTTTAAATAGCAGACTCCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14104263 54 - 49578535 TATGAAAGACAAGAATCCCAGAAGATTGGCCCTGTTTAAAATAGCAGACTCCAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178702900 52 + 195471971 TATGAAAGGCAAGAATCCCTAAAGATCAG--CTGTTTTAAATAGCACACTCCAG i mm10.chr1 C 0 C 0 s canFam3.chr7 36283330 54 + 80974532 TATGAAAGACAAGAATCCCCAAAGATCGGTTCCATTTTAAATAGCAGACTCCAG i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140095598 1548 - 143122389 M a score=1727742.000000 s hg38.chr1_KI270759v1_alt 98635 443 + 425601 GGACTCAAGGTTTGTAACAAAAGGGCAGATATGGAAGAGATGAACTCCCGGGTCCAACTCT----GAGAATAGAGCACCCTCAGGGCTG-GGGATCCCTGAGGTGTCAGGGAATGCCAATCTCGCTGGTTCCGGTTTATTAGCTCGGGGAATCTCGTTAGATATCCTCACAATAAGCTAGTTGGTATTGACTTTG-----CCTGACCCATATTATAAAGTTCTAACAAGTGGAAAGTATAGCCAAGCTTTGGGAAATGCCATAGCATGCAGAATA-GAAGAGAAAACCAGCGTCTTAAATGAACAGAGGAGAAATTTGAGCAGAA-CCACCAACTGGAGAAATTAGGACACTGGCTGGAATGTTACAGCCACAACAGGG--GAAAAAAGCAGAATATTTACTTAGTGAAGACATAATGAGATGGTACAATTCTCTGGTGTCAACTT---TCACAGAAGAG s panTro4.chr1 224848291 440 + 228333871 GGACTCAAGGTTTGTAACAAAAGGGCAGATATGGAAGAGATGAACTCCCGGGTCCAACTCT----GAGAATAGAGCACCCTCAGGGCTG-GGG-TCCCTGAGGTGTCAGGGAATGCCAATCTCGCTGGCTCTGGTTTATTAGCTCGGGGAATCTCGTTAGATATCCTCACAATAAGCTAGTTGGTATTGACTTTG-----CCTGACCCATATTATAAAGTTCTAACAAGTGGAAAGTGTAGCCAAGCTTTGGGAAATGCCATAGCATGCAGAATA-GAAGAGAAAACCAGCGTCTTTATTGAACAGAGGAGAAATTTGAGCAGAA-CCACCAACTGGAGAAATTAGGACACTGGCTGGAATGTTACAGCCACAACAGGG--GAAAAAAGCAGAAT-TTTACTTAGTGAAGAC-TAATGAGATGATACATTTCTCTGGTGTCAACTT---TCACAGAAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226205565 442 - 229942017 GGACTCCAGATTTGTAACAAAAGGGCAGATATGGAAGAGATGAACTCCCGGGTCCAACTCT----GAGAATAGAGCACCCTCAGGGCTG-GGG-TCCCGGAGGTGTTGGGGAATGCCAATCTCGCTGGCTGTGGTTTATTAGCTCGGGGAATCTAGTTAGATATCCTCACAATAAGCTAGTTGGTATTGACTTTG-----CCTGACCCATATTATAAAGTTCTAACAAGTGGAAAGTATAGCCAAGCTTTGGGAAATGCCATAGCATGCAGAATA-GAAGAGAAAACCAGCGTCTTAAATGAACAGAGGAGAAATTTGAGCAGAA-CCACCAACTGGAGAAATTAGGACGCTGGCTGGAATGTTACAGCCACAACAGGG--GAAAAAAGCAGAATATTTACTTGGTGAAGAGATAATGAGATGATACAATTCTCTGGTGTCAGCTT---TCACAGAAGAG i ponAbe2.chr1 C 0 I 230 s nomLeu3.chr5 140097171 442 - 143122389 GGACTCGGGGTTTGTAACAAAAGGGCATATATGGACGAGATGAACTCCCAGGTCCAACTGT----GAGAATAGAGCACCCTCAGGGCTG-GGG-TCCCTGAGGTGTCGGGGAATGCCAATCTCGCTGGCTCTGGTTTATTAGCTCAGGGAATCTAGTTAGATATGCTCACAATAAGCTAGTTGGTATTGACTTTG-----CCTGACCCATATTATAAAGTTCTAACAAGTGGAAAGTATAGCCAAGCTTTGGGAAATGCCGTAGCATGCAGAATA-GAAGAGAAAACCAGCGTCTTAAATGAACAGAGGAGAAATTTGAGCAGAA-CCACCAACTGGAGAAATTAGGACACTGGCTGGAATGTTACAGCCACAACAGGG--GAAAAAAGCAGAATATTTACTTAGTGAAGACATAATGAGATGATACAATTCTCTGGTGTCAACTT---TCACAGAAGAG i nomLeu3.chr5 M 1548 C 0 s rheMac3.chr1 16813963 447 - 229590362 GGACTCAAGGTTTGTCACGAAAGGGCAGATATGGAAGAGATGAACTCCCGGGTCCAACTCT----GAGAATAGAGCGCCCCGAGGGCTG-GGG-TCCCTGAGGTGTCGGGGAATGC--GTCTCGCTGGCTCGCGTTTATTAGCTGGGGGAATCTAGTTAGATACGCTTACAATATGCCCGTTGGTATTGACTTTGCCAGACCTGACCCATATTATGAAGTTCTAACAAGTGGAAAGTATAGCCAGGCTTTGGGAGATGCCGTAGCATGCAGAATG-GAAGAGAAAACCAGCATCTTAAACGAACAGAGGAGAAATTTGAGCAGAA-CCACCAACTGGAGAAATTAGGACACTGGCTGGAATGTTACAGCCACAGGAGGGAAAAAAAAAGCAGAATATTTACTTGGTGAAGACATAATGAGATGATATAATTCTCTGGTGTCAACTT---TCACAGAAGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223574420 447 - 227556264 GGACTCAAGGTTTGTCACGAAAGGGCAGATATGGAAGAGATGAACTCCCGGGTCCAACTCT----GAGAATAGAGCGCCCCGAGGGCTG-GGG-TCCCTGAGGTGTCGGGGAATGC--GTCTCGCTGGCTCGCGTTTATTAGCTGGGGGAATCTAGTTAGATACGCTTACAATATGCCCGTTGGTATTGACTTTGCCAGACCTGACCCATATTATGAAGTTCTAACAAGTGGAAAGTATAGCCAGGCTTTGGGAGATGCCGTAGCATGCAGAATG-GAAGAGAAAACCAGCATCTTAAACGAACAGAGGAGAAATTTGAGCAGAA-CCACCAACTGGAGAAATTAGGACACTGGCTGGAATGTTACAGCCACAGGAGGGAAAAAAAAAGCAGAATATTTACTTGGTGAAGACATAATGAGATGATATAATTCTCTGGTGTCAACTT---TCACAGAAGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16625489 448 - 220367699 GGACTCAAGGTTTGTCATGAAAGGGCAGATATGGAAGAGATGAACTCCCGGGTCCAACTCT----GAGAATAGAGCGCCCCGAGGGCTG-GGG-TCCCTGAGGTGTCGGGGAATGC--GTCTCGCTGGCTCGCGTTTATTAGCTGGGGGAATCTAGTTAGATGCGCTCACAATACGCTCGTTGGTATTGACTTTGCCAGACCTGACCCATATTATGAAGTTCTAACAAGTGGAAAGTATAGCCAGGCTTTGGGAGATGCCGTAGCATGCAGAATA-GAAGAGAAAACCAGCATCTTAAACAAACAGTGGAGAAATTTGAGCAGAACCCCCCAACTGGAGAAATTAGGACGCTGGCTGGAATGTTACAGccacaggagggaaaaaaaaagcagaatatttaCTTAGTGAAGACATAATGAGATGATACAATTCTCTGGTGTCAACTT---TCACAGAAGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82424397 446 + 85787240 GGACTCAAGGTTTGTCACGAAAGGGCAGATATGGAAGAGATGAACTCCTGGGTCCAACTCT----GAGAATAGAGCGCCCTGAGGGCTG-GGG-TCCCTGAGGTGTCGGGGAATGCCAGTCTCGCTGGCTCGCGTTTATTAGCTGGGGGAATCTAGTTAGATATGCTCACAATACGCTCGTTGGTATTGACTTTGCCAGACCTGACCCATATTATGAAGTTCTAACAAGTGGAAAGTATAGCCAGGCTTTGGGAGATGCCGTAGCATGCAGAATG-GAAGAGAAAACCAGCATCTTAAACGAACAGAGGAGAAATTTG---AGAA-CCACCAACTGGAGAAATTAGGACACTGGCTGGAATGTTACAGCCACGAGAGGGAAAAAAAAAGCAGAATATTTACTTAGTGAAGACATAATGAGATGATACAATTCTCTGGTGTCAACTT---TCACAGAAGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14104317 446 - 49578535 GGACTCAAGGTTTGTAACAAAAGGGCAGATATGCA-GAGATGAACTCCCGGGTCCAGCTCT----GAGAATAAAGCGCCCTCAGGGCTGTGGG-ATCCTGATG-GTTGGGGAATGCCAACCTTGCTGGCTCTGGTTTATTAGCTCGGGGAATCTAGTTAGATATGCTCACAATAAGCCAGTTGGTGTGGACTCTGCTAGGCCTGACCCATATTCTAAACTTCTAACAAGTGGAAAGTGTAGCCAAGCTTTGGGAAATGCCATAGCAGGCAGAATA-GAAGAGAAAACCCGCATCTTAAATGAACAGAGGAGAAATTTGAGCAGAA-CCACCAACCGGAGAAATTAGAACACTGGATGGAATGTTACAGCCACAACAGGG--GAAAAAAGCAGAATATTTATTTAGTGAAGACATAATCAGATTCTACAATTCTCTGGTGTCAGCTT---GCACAGAAGAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178702952 412 + 195471971 GGACCCAAGGCTTATAACAAAAGGGTAGATATGGCAGAGATGAACCCCCAGGTCCAGCTCT----GAGAATCAAGTGTGCT---GGCTG-GGC-TCCCTGAGGTGTTGGGGAATGCCAATCTTGTTGGCTCTGGTTGGTTAGCTAGGGGAGTCTAGTTAGATATGGCCACAAT--GTCAGTTGGTGTTGACTCTG---------ACCCACAT------------ACAAGTGGAAAACACAGCTGAGC-TTGGGAAAAACCATAGTATACAAAATACGACAAAAAAAGTTACGTCTTCAATGAACAGGGGCGAAATCTGAGCAGAA-CTCTCTAACGAAAAATCCGGGACACTAGATGGAATATTACAGCCATGAT------GGAAAAAGCAGAGTATTTA-------AAAATACAACAAGATTAGACACATTTCTAGTCCTGGCTTACCACACAGAAAA- i mm10.chr1 C 0 C 0 s canFam3.chr7 36283384 444 + 80974532 GGACTCAAGGTTTGTAACGAAAGGGCAGATATGAAAGAGATGAACTCTCAGGTCTGACTCTTTTCAAGAATAAAGCACACT---GGCTG-GGA-TCCCTGAGGTGCCAGGGTCTGCCAATCTTGCTGGCTCTGGTTTGTTAGCTAGGGGAATCTAGTGAGATATGCTCACAATAAGTTAGTTGGTATTGACTTTGCTGGGCCTGACCCATATTATAAAGTTGCAACAAGTGGAAAGTATAGCCGAGCTTTGGGAAAAGCCATAGCATGTACAATG-GAAGAGAAAACCAACATCTTAATTGAACAGAGGAGAAATTTGAGCAGAA-GCACCAAGTTAAGAAATTAGGACACTGAATGGAATGTTACAGCCACAACA-----GAAAGAAGTTGAATATTTACTTAGTGAGGATGTAATCGTATAAT-CGATTCTCTGGTGGCAACTC---ACATAGAACAT i canFam3.chr7 C 0 C 0 a score=2887888.000000 s hg38.chr1_KI270759v1_alt 99078 855 + 425601 CTTTGTCTCTGTGCTAA--TGATGCAGAGAGCAGGGAAGTGATGAGAAAATTGTATAGACCTCAAGAAATCCAACAACAGCAAAAAAAGAATTT-GGAGTTTAGTTTTGTATCTTCTGAGGTCCAGGATT-------------------------TTTCCATCTCCCTAAATTTGAGAATTCAGGTTCAAGGAAGGACTTGGAGAATAGTCAAAACATTACTACACTTCTTAAAGCATTCTTAATGGTATTTTTACTAGTGAAATAGAAAATGAAAACACACACATGTAAATAAGCATATTTTATTAATCCTCCAAATGCCC-TGGGTAAACCAGTTTAGAAAACCATCAGATG----CAAAGTCTGTCATGGGTCTGGTGACGAGATTAGGATCAGTCCTAATTAGGATTAATGAAACA-GAGTTTCCCGGGAAGCA--------ACTGTGACAAGCTGTTCTTTGAATTCTGGACATGTAGGAATGATGTGAAAGTCTAGATGATCAGCCTCATGGAGTAAGGGATCCGAACCTCCAAAGGGAATAGGCAGAAGAACAA--TTTCAAATATCTTCATAAGATC----------AGCCCACAAATG-----------------------------------------------------------------------TTTGCCTACCCGTGTGCAGGTTTGCAATTAGAGGCTTTAGAGCAT--TGGTTTTG-ATTCTTAAGCCATTTTTATTTGAGGAGAAAGATGCCTGAGAGTGTTTTTAGTT-AATATTCCTTATGGCAAATCTGTGATTTTGCaa-ctaggatgcagagaggttaattgactttattaaggtcccacagctggtcatttgggtagaactgagCCCCTGGCTTAT--GGCTAACCTACAGAGAC----------------------------------------------TCT-------------CCCTCTCTGTATTTCTAGGATTTTCAGTCATTTCAGAGTTCTGCTGTCCTATTGATGTTG---------------------------TTTTT s panTro4.chr1 224848731 856 + 228333871 CTTTGTCTCTGTGCTAA--TGATGCAGAAAGCAGGGAAGTGATGAGAAAATTGTATAGACCTCAAGAAATCCAACAACAGCAAAAAAAGAATTT-GGAGTTTAGTTTTGTATCTTCTGAGGTCCAGGATT-------------------------TTTCCATATCCCTAAATTTGAGAATTCAGGTTCAAGGAAGGACTTGGAGAATAGTCAAAACATTACTATACTTCTTAAAGCATTCTTAATGGTATTTTTACTAGTGAAATAGAAAATGAAAACACACACATGTAAATAAGCATATTTTATTAATCCTCCAAATGCCC-TGGGTAAACCAGTTTAGAAAACCATCAGATG----CAAAGTCTGTCATGGGTCTGGTGACGAGATTAGGATCAGTCCTAATTAGGATTAATGAAACAAGAGTTTCCCGGGAAGCA--------ACCGTGACAAGCTGTTCTTTGAATTCTGGGCATGTAGGAATGATGTGAAAGTTTAGATGATCAGCCTCATGGAGTAAGGGATCCGAACCTCCACAGGGAATAGGCAGAAGAACAA--TTTCAAATATCTTCACAAGATC----------AGCCCACAAATG-----------------------------------------------------------------------TTTGCCTACCCGTGTGCAGGTTTGCAATTAGAGGCTTTAGAGCAT--TGGTTTTG-ATTCTTAAGCCATTTTTATTTGAGGAGAAAGATGCCTGAGAGTGTTTTTAGTT-AATATTCCTTATGGCAAATCTGTGATTTTGCaa-ctaggatgcagagaggttaattgactttattaaggtcccacagctggtcatttgggtagaactgagCCCCTGGCTTAT--GGCTAACCTACAGAGAC----------------------------------------------TCT-------------CCCTCTCTGTATTTCTAGGATTTTCAGTCATTTCAGAGTTCTGCTGTCCTATTGATGTTT---------------------------TTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226206237 852 - 229942017 CTTTGTCTCTGTGCTAA--GGATGCAGAAAGCACGGAAGTGATGAGAAAATTGTATAGACCTCAAGAAATCCAACAACAGCAAAAAAAGAATTT-GGAGTTTAGTTTTGTATCTTCTG------AGGATT-------------------------TTTCCATATCCCTAAATTTGAGAATTCAGGTTTAAGGAAGGACTTGGAGAATAGTCAAAACATTACTACACTTCTTAAAGCATTCTTAATGGTAGTTTTACTAGTGAAATAGAAAATGAAAACACACACATGTAAATAAGCATATTTTATTAATCTTCCAAATGCCC-TGGGTAAACCAGTTTAGAAAACCATCAGATG----CAAAGTCTGTCATGGGTCTGGTGACAAGATTAGGATCAGTCCTAATTAGGATTAATGAAACA-GAGTTTCCCGGGAAGCA--------ACTGTGACAAGCTGTTCTTTGAATTCTGGACATGTAGGAATGATGTGAAAGTCTAGATGATCAGCCTTATAGAGTAAGGGATCCGAAACTCCAAAGGGAATAGGCAGAAGAACAA--TTTCAAATATCTTCACAAGATC----------AGCCCACAAATG-----------------------------------------------------------------------TTTGCCTAGCCGTGTGCAGGTTTGCAATTAGAGGCTTTAGAGCAT--TGGTTTTG-ATTCTTAAGCCATTTTTATTTGAGGAGAAAGATGCCTGAGAGTGTTTTTAGTT-AATATTCCGTATGGCAAATCTGTGATTTTGCaagctaggatgcagagaggttaattgactttattaaggtcccacagctggtcatttgggtagaactgagCCCCTGGCTTAT--GGCTAACCTACAGAGAC----------------------------------------TC--TTTCT-------------CCCTCTCTGTATTTCTAGGATTTTCGGTCATTTCAGAGTTCTGCTCTCCTATTGATGTTG-----------------------------TTG i ponAbe2.chr1 I 230 C 0 s nomLeu3.chr5 140097613 859 - 143122389 CTTCGTCTCTGTGCTAA--TGATGCAGAAAGCAGGGAAGTGATGAGAAAATTGTATAGACCTCAAGAAATCCAACAACAGCAAAAAAAGAATTT-GGAGTTTAGTTTTGTATCTTCTGAGGTCCAGGATT-------------------------TTTCCATATCCCTAAATTTGAGAATTCAGGTTTAAGGAAGGACTTGGAGAATAGTGAAAACATTACTACACTTCTTAAAGCATTCTTCATGGTATTTTTACTAGTG-AATAGAAAATGAAAACACACACATGTAAATAAGCATATTTTATTAATCCTCCAAATGCCC-TGGGTCAACCAGTTCAGAAAACCATCAGATG----CAAAGTCTGTCATGGGTCTGGTGACAAGATTAGGATCAGTCCTAATTAGGATTAATGAAACA-GAGTTTCCCGGGAAGCA--------ACCGTGACAAGCTGTTCTTTGAATTCTGGACGTGTAGGAACGATGTGAAAGTTTAGATGATCAGTCTTATAGAGTAAGGGATCCAAAACTCCAAAGGGAATAGGCAGAGGAACAA--TTTCAAATATCTTCACAAGATC----------AGCCCACTAATG-----------------------------------------------------------------------TTTGCCTACCCGTGTGCAGGTTTGCAATTAGAGGCTTTAGAGCAT--TGGTTTTG-ATTCTCAAGCCATTTTTATTTGAGGAGAAAGATGCCTGAGAGTGTTTTTAGTT-AATATTCCTTATGGCAAATCTGTGATTTTGCaagctaggatgcagagaggttaattgactttattaaggtcccacagctggtcatttgggtagaactgagCCCCTGGCTTAT--GGCTAACCTACAGACTC--------------------------------------------TTTCT-------------CCCTCTCTGTATTTCTAGGATTTTCAGTCATTTCAGAGTTCTGCTGTCCTATTGATGttttt-------------------------ttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16814410 922 - 229590362 CTTTGTCTCTATGCTAA--TGATGCAAAAAGCAGGGAAGTGATGAGAAAATTGTATAGACCTTAATAAATCCAACAACAGCAAAAAATGAATTT-GGAGGTTAGTTTTGTATCTTCTGAGGTCCACGATG-------------------------TTTACGTATCCCTAAATTTGAGAATTCAGGTTTAAGGAAGGACTTGGAGAATAGTCAAAACATTACCATACTTCTTAAAGCATTCTTAATGGTATTTTTACTAGTGAAATAGAAAATGAAAACATGCACGTGTAAATAA--GTATTTTATTAATCCTCCAAATGCACTTGGGTAAACCAGTGTAGAAAACCATCAGATG----CAAAGTCTGTCATGGGTCTGGTGACAAGATTAGGATCAGTCCTAATTAGGATTATTGAAACA-GAGTTTCCCAGGAAACA--------ACCGTGACAAGCTGTTCTTTGAATTCTGGACATGTGGGAATGATGTGAAAGTTTAGATTGTGAGCCTTATAGAGTAAGGGATCCGAAACTCCAAAGGGAATAGGCAGAAGAACAA--TTTCAAATATCTTCACGAGAGC----------AGCCCACAACTGTTGACCCGCCCGTGTGCAGGTTTGCAGTGAGAGGCTCTAGAGCACTGGTTTGGATTCTTAAGCCGTTTTCATTTACCCACCCGTGTGCAGGTTTGCAATGAGAGGCTCTAGAGCAT--TGGTTTGG-ATTCTTAAGCCGTTTTCATTTGAGGAGAAAGATGCTGGAGAGTGTTTTGGGTT-AATATT-CTTATGGCAGGTCTATGATTTTGCaagctaggatgcagagaggttaattgactttattacggtcccacagctggtcatttgggtagaaccgagcctcTGGCTTGT--GGCTGATCTACAGAGAC----------------------------------------TCTTTTTCT-------------CCCTCTCTGTATTTCTAGGATTTTCAGTCATTTCACAGTTCTGCTGTCCTATTGG------------------------------------T i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223574867 853 - 227556264 CTTTGTCTCTATGCTAA--TGATGCAAAAAGCAGGGAAGTGATGAGAAAATTGTATAGACCTTAATAAATCCAACAACAGCAAAAAATGAATTT-GGAGGTTAGTTTTGTATCTTCTGAGGTCCACGATG-------------------------TTTACGTATCCCTAAATTTGAGAATTCAGGTTTAAGGAAGGACTTGGAGAATAGTCAAAACATTACCATACTTCTTAAAGCATTCTTAATGGTATTTTTACTAGTGAAATAGAAAATGAAAACATGCACGTGTAAATAA--GTATTTTATTAATCCTCCAAATGCACTTGGGTAAACCAGTGTAGAAAACCATCAGATG----CAAAGTCTGTCATGGGTCTGGTGACAAGATTAGGATCAGTCCTAATTAGGATTATTGAAACA-GAGTTTCCCAGGAAACA--------ACCGTGACAAGCTGTTCTTTGAATTCTGGACATGTAGGAATGATGTGAAAGTTTAGATTGTGAGCCTTATAGAGTAAGGGATCCGAAACTCCAAAGGGAATAGGCAGAAGAACAA--CTTCAAATATCTTCACAAGAGC----------AGCCCACAACTG-----------------------------------------------------------------------TTTGCCCACCCGTGTGCAGGTTTGCAATGAGAGGCTTTAGAGCAT--TGGTTTGG-ATTCTTAAGCCGTTTTCATTTGAGGAGAAAGATGCTGGAGAGTGTTTTGGGTT-AATATT-CTTATGGCAGGTCTGTGATTTTGCaagctaggatgcagagaggttaattgactttattacggtcccacagctggtcatttgggtagaaccgagcctcTGGCTTGT--GGCTGATCTACAGAGAC----------------------------------------TCTTTTTCT-------------CCCTCTCTGTATTTCTAGGATTTTCAGTCATTTCACAGTTCTGCTGTCCTATTGG----------------------------------TTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16625937 857 - 220367699 CTTTGTCTCTGTGCTAA--TGATGCAAAAAGCAGGGAAGTGATGAGAAAATTGTATAGACCTTAATAAattcaacaacagcaaaaaatgaATTT-GGAGGTTAGTTTTGTATCTTCTGAGGTCCACGATG-------------------------TTTACGTATCCCTAAATTTGAGAATTCAGGTTTAAGGAAGGACTTGGAGGATAGTCAAAACATTACCATACTTCTTAAAGCATTCTTAATGGTATTTTTACtagtgaaatagaaaatgaaaacatgcacGTGTAAATAAGCGTATTTTATTAATCCTCCAAATGCAC-TGGGTAAACCAGTGTAGAAAACCATCAGATG----CAAAGTCTGTCATGGGTCTGGTGACAAGATTAGGATCAGTCCTAATTAGGATTATTGAAACA-GAGTTTCCCAGGAAACA--------ACCGTGACAAGCTGTTCTTTGAATTCTGGACATGTAGGAATGATGTGAAAGTTTAGATTATGAGCCTTATAGAGTAAGGGATCCGAAACTCCAAAGGGAATAGGCAGAAGAACAA--TTTCAAATATCTTCACAAGAGC----------AGCCCACAACTG-----------------------------------------------------------------------TTTGCCCACCCGTGTGCAGGTTTGCAATTAGAGGCTTTAGAGCAT--TGGTTTTG-ATTCTTAAGCCATTTTCATTTGAGGAGAAAGATGCCGGAGAATGTTTTTGGTT-AATATTCCTTATGGCAGGTCTATGGTTTTGCAAGCTAGGATGCAGAGAGGCTAATTGACTTTATTACGGTCCCACAGCTGGTCCTTTGGGTAGAACCGAGCCTCTGGCTTAT--GGCTAACCTACAGAgac----------------------------------------tctttttct-------------ccctctctgtatTTCTAGGATTTTCAGTCATTTCACAGTTCTGCTGTCctattgt--------------------------------gtgtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82424843 889 + 85787240 CTTTGTCTCTATGCTAA--TGATGCAAAAAGCAGGGAAGTGATGAGAAAATTGTATAGACCTTAATAAATCCAACAACAGCAAAAAATGAATTT-GGAGGTTAGTCTTGTATCTTCTGAGGTCCACGATT-------------------------TTTACGTATCCCTAAATTTGAGAATTCAGGTTTAAGGAAGGACTTGGAGAATAGTCAAAACATTGCCATACTTCTTAAAGCATTCTTAATGGTGTTTTTACTAGTGAAATAGAAAATGAAAACATGCACATGTAAGTAAGCGTATTTTATTAATCCTCCAAGTGCAC-TGGGTAAACCAGTGTAGAAAACCATCAGATG----CAAAGTCTGTCATGGGTCTGGTGACAAGATTAGGATCAGTCCTAATTAGGATTATTGAAACA-GAGTTTCCCAGGAAACA--------ACCGTGACAAGCTGTTCTTTGAATTCTGGACATGTAGGAATGATGTGAAAGTTTAGATTATGAGCCTTATAGAGTAAGGGATCCGAAACTCCAAAGGGAATAGGCAGAAGAACAA--TTTCAAATATCTTCACAAGAGC----------AGCCCACAACTG-----------------------------------------------------------------------TTTGCCCACCCGTGTGCAGGTTTGCAATTAGAGGCTTTAGAGCAT--TGGTTTTG-ATTCTTAAGCCATTTTCATTTGAGGAAAAAGATGCCGGAGAGTGTTTTTGGTT-AATATTCCTTATGGCAGGTCTGTGATTTTGCTagctaggatgcagagaggttaattgactttattacggtcccacagctggtcatttgggtagaactgagCCCCTGGCTTAT--GGCTAACCTACAGAGAC----------------------------------------TCTTTTTCT-------------CCCTCTCTGTATTTCTAGGATTTTCAGTCATTTCACAGTTCTGCTGTCCTATTGGTTTtatatatacatatacatatacatatacatatata i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14104763 829 - 49578535 CTTTGTCTTTGTGCTAA--TGAGGCAAAAAGCAGGGAGGTGATCAGAACATTGTACAGACCTTAAGAAACCCAACAACAGCAAAAAATTAATTT-GGAGTTTAGTTTTGCCCCTCCTGAGGTCCAGGATT-------------------------TTTACACATCCCTAAATCTGAGAATTCAGGTTTTAGGAAGGACTTAGAGAAAAGTCA-------------------AAAGCATTCTTAATGGCATTTTTACTAGTGAAATAGAAAAGAAAAACACGCGCATGTAAATAAGCGTATTTTATTAACCATCCAAATGCAT-TGGGTAAACCAGGTTAGAAGACCATCAGATG----CAAAGTCTGTTATGGGTCTGGTGACAAGATTAGGATCAGTCCTAATTAGGATTAATGGAACA---GTTTCCCAGTAAGCA--------GCCCTGACAAGCTGCGCTTTGAATTCTGGACATGTGGGAATGACGTGAAGGTTTAGATGATCAGCCTTATAGAGTAGGGGACCCTGAGCTCCAAAGGGAATAGGCAGAAGAACAA--TTTCAAATATCTTCCTGAGATC----------AGCCCATGAATA-----------------------------------------------------------------------TTTGCCTCGCCGTGTGCAGGTTTGCAATTAGAGGCTTTAGAGCAT--TGGTTTTG-ATTCTGAAGCCATTTTTATCAGAGGAGAGAGATGGCTGAGAGTGTTTTTAGTT-AATATTCCTTATGGCAGATCTGTGattttgcaaacgaggatgcagagaggttaactgacttgattaaggtcccacagctgctcatttgggtagaactgagCCCCTGGTTTAT--GGCTAACCTGTGGAGAC---------------------------------------------------------------TTTTTCTCTATTTCTAGGATTTTCAGTCATTTCAGAGTTCTGCTGTCCTATTGTTGGTT---------------------------TTT-- i calJac3.chr19 C 0 I 469 s mm10.chr1 178703364 833 + 195471971 -----CCTCTTTGATAATTTTATGTGGA---CAGGAGAAT--TTGACATATTAGATAAATTTGAATAAATCTGAAAAAGAAAAAAATTAACTTT-GGAATTTTGTTTTACAAGTCATGAGGTCCAGGATTTAAAAAAAAATGTTTAAAAACTGTATTTTAGTGTTCTC---TATGAGAATTTGTAATTACGGAAGTA--GAGAGAGTATTTG-GGCATTACTCAAGTTCC-AAAGCGTTCTCAATGTTACTTTTCTCAGAGAAGGGGAGGGCGATGACACAT--------ATAAGCATATTTAGTTAATAAGCTAGGCCTGT-TAGATGGACCAGTTTAGAAAG-CATCGGAGG----CCAAA--GGTCGTGGGTTCAGTAACAAGATTAAGATCTG-CTTGATTAGGGTCAGCGGCCGG-GAGCTTCACAGCAGACAACGCTGTGACTGTGACATGCTGTCCCT---------GACTTGTAGGAATGGTGTGACAG-----------------ATACAGCAAGTGACCCTAAACTCAGAGGGGAAGAGACTGATCCCCAAACTGTCAGAGAGTGCCATGAGCTC----------AGCCCTCCA--G-----------------------------------------------------------------------CTGGCCATTTTGTGTGTAGGTTTGTGGGGGGAAGGGTTAGCAGAT--TGGTTTTG-AGTCTTAAGCCATTTT----TGAGAATAAAGATATCTGAGGGTCCCTCTAGCCAAATATTCCTTCTGGCGTACCTCTGATTTGAACCATTAGGATGTGGCGAGGTTAACTGACTGTAATGAGGTCCTGCAGCTGGAACTTTGTGTACAACTGAACC-CTGGCTTTTAAAGCTCACCCATAGACAA----------------------------------------TGTTCGCTT-------------TTCTCTGTGTATGCCAGAGATCTTCAATTAGTTTTGAGCTCTGCTCTCTTATGACAGA---------------------------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36283828 907 + 80974532 CTTTGTCTCTCTGCTAA--T--TGTTAAAAGCAAGGGGGTGCTGAGAAAATTATATGAACTTGAAGAAATCTGATAACAGCAAAG--TGAATTTGGGAGTTCTGTGTTACAACCAATAAGGCCTGGGAGT-------------------------TTTCAGTGTCCTGAAATTTGAGAAATTGGGTTTAAGGGTAGGCT--AAGGAACATCCAAACATTATGGAACCCCT-GAAGCAGGTTCCATGTTGGCTTTACTAGTGAAATACATGATGAAAACATGTATACATAAAAAAGTGTATCTTATTAATAATCCACATCTGC-TGGGTGAGCCGATTCAGAAAATCATCAAATGTAGACAAAGGCTGTCATGGGTCTGGTGACAAGATCAGG------CCTGCTCAAAACCGATAATCCA-GAGACTCCTGGTAAGCA--------GCCCTGCCACACTCTTCTCTGAATTCTGGGCCTGTAGGATGGATGCAAGAGTTAAAATTATCAGCTTTGTACAGTCAGTGATCCTATACTTCCAAGGGACGGGACGGAGGGCCGA--CCGCAAACCTCTTCACGAGATTCTTGTAAGTGAGCCCAGAAATA-----------------------------------------------------------------------TCT-CCTACTTCTGTATGGGTTTTCAATGAGAGGCTTTAAAGCATACTGGTTTTGCATTTTCAGTCCATTGTTATTTGAAGAGAAGGACTTTTGAGAGTGTTTTTATTT-AACATCCTTTATGGCAGATCTCTGATTTTGGGGGCAACCTTACAGAGAGGTTAATTGATTTTGTTAAGGTCCCACA-CCGGCCATTTGGCCAGAACCAAACCTCTGGCTTAT--TTCTAAACCACAGAGACCATTtctttctctctctctctctctctctctctctctctctctctttctTCCTTCCCACCCCCCCTCTCTGTATTTCAGGGATTTTCAGGCATTTTAGAGTACTGCCATCTGCTAG-------------------------------------- i canFam3.chr7 C 0 C 0 a score=12552.000000 s hg38.chr1_KI270759v1_alt 99933 7 + 425601 TTTTTTT- s panTro4.chr1 224849587 7 + 228333871 TTTTTTT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226207089 7 - 229942017 TTTTTTT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140098472 7 - 143122389 ttttttt- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16815332 7 - 229590362 TTTTTTT- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223575720 7 - 227556264 TTTTTTT- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16626794 7 - 220367699 ttttttt- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82425732 7 + 85787240 tatatat- i chlSab2.chr25 C 0 C 0 s mm10.chr1 178704197 6 + 195471971 -TTTCTT- i mm10.chr1 C 0 I 1 s canFam3.chr7 36284735 6 + 80974532 --CTTCTG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14105592 469 - 49578535 I a score=1018316.000000 s hg38.chr1_KI270759v1_alt 99940 344 + 425601 GTATGCATGAATAAGTGCTGCAATTAACGGGCTGTGGCGTGAACTAGGGGTGTGAATCAGGATCACTCATCCCACCAAGTTGGGCTTCTGTGTCTTCATGTTTCCACATGGAACTTGGCCTGGAATAGATCTAAGGGCTTTTCCAGCTCCA---------TTTTTAAAAA--TTGCTTACTGAATTGTGTAGGATTTGGTATTTCTGCAGTTGGCAAACAGAATACAAGGTTTGGTGTCAAGTCGAAACTGGAACCATGTAAGCCATTGCATTACTCTGGAACAATCAGCTGACTCTG-----AAACAA-------TTCTTGTTCACCAATGACAGTTTGGGAA-TTTTTTCCCAGTTTGGTAGGGAA s panTro4.chr1 224849594 344 + 228333871 GTATGCATGAATAAGTGCTGCAATTTATGGgctgtggcatgaactaggggcgtgaatcaggatcactcatcccaccaagttgggcttctgtgtcttcatgtttccacatggaacttggcctggaatagatctaagggcttttccagctcca---------ttttaAAAAA--TTGCTTACTGAATTGTGTAGGATTTGGTATTTCTGCAGTTGGTAAACAGAATACAAGGTTTGGTGTCAAGTCAAAACTGGAACCATGTAAGCCATTGCATTACTCTGGAACAATCAGCTGACTCTG-----AAACAA-------TTCTCATTCACCAATGACAGTTTGGGAA-TTTTTTCCCAGTTTGGTAGGGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226207096 342 - 229942017 GTATGCATGAGTAAGTGCTGCAATTAATGGGCTGTGGCGTGAACTAGGGGTGTGAATCAGGTTCACTCATCCTACCAAGTTGGGCTTCTGTGTCTTCATGTTTCCGCATGGAACTTGACCTAGAATAGATCTAAGGGCTTTTCCAGCTCCA---------TTTTTAAAAA--TTGCTTTCTGAATTGTGTAGGATATGGTATTTCTGCAGTTGGTAAAGAGAATACGAGGTTTGGTGTGAAGTCGAAACTGGAACCGTGTAAGCCATTGCACTACTCTGGAACCATCAGCTGACT-TC-----AAACAA-------TTCTTGTTCACCATTGACAGTTTGGGAA--CTTTTCCCGGTTTCGTGGGGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140098479 345 - 143122389 GTATGCATAAATGAGCACTGCAATTAACGGGCTGTGGCGTGAATTAGGGGTGTGAATCAGGATCACTCATCCCACCAAGTTGGGCTTCTGTGTCTTCACGTTTTCGCAGGGAACTTGGCCTAGGATAGATCTAAGGGCTTTTCCAGCTCCA---------TTTTTAAAAA--TTGCTTTCTGAATTGTGTAGGATTTGGTATTTCTGCAGTTGGTAAACAGAATACAAGGTCTGGTGTCAAATCGAAACTGGAACCATGTAAGCCATTGCATTACTCTGGAACAATCAGCTGACTCTT-----GAACGA-------TTCTTGTTCACCATTGACAGTTGGGAATTTTTTTTCCCAGTTTGGTAGGGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16815339 342 - 229590362 TAATGCATGAATGAGTGCTGCAGTTAACGGgctgtggcatgaacgaggtgtgtgaatcggaatcactcaccccaccaatttcagcttctctgtcttcatgtttctgcatggaac--ggcctagaatagatctaaggacttttccaactcCT---------TTTTGAAAAA--TTGCTTTCTGAGTTGTGTAGGATTTGGTATTCCTGCAGTTGGTAAACAAAATACAAAGTTTGGTGTCAAGTCAAAACTGGAGCCATGTAAGCCATGGCATTACTCTGGAACAATCAGCTGACTCTG-----AAACAG-------TTCTCGTTCACCGTGCGCAGTGTGGGAG-GTGTTTCCCAGTTTGGTAGCGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223575727 342 - 227556264 TAATGCATGAATGAGTGCTGCAGTTAACGGGCTGTGGCATGAACGAGGTGTGTGAATCGGAATCACTCACCCCACCAATTTCAGCTTCTCTGTCTTCATGTTTCTGCATGGAAC--GGCCTAGAATAGATCTAAGGACTTTTCCAGCTCCT---------TTTTGAAAAA--TTGCTTTCTGAATTGTGTAGGATTTGGTATTCCTGCAGTTGGTAAACAAAATACAAAGTTTGGTGTCAAGTCAAAACTGGAGCCATGTAAGCCATGGCATTACTCTGGAACAATCAGCTGACTCTG-----AAACAG-------TTCTCGTTCACCGTGCGCAGTGTGGGAG-GTGTTTCCCAGTTTGGTAGCGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16626801 342 - 220367699 aaatgcatgaataAGTGCTGCAGTTAACGGGCTGTGGCATGAACGAGGTGTGTGAATCAGAATCACTCACCCCACCAATTTCAGCTTCTCTGTCTTCATGTTTCTGCATGGAAC--GGCCTAGAATAGATCTAAGGACTTTTCCAGCTCCT---------TTTTGAAAAA--TTGCTTTCTGAGTTGTGTAGGATTTGGTATTCCTGCAGTTGGTAAACAAATTACAAAGTTTGGTGTCAAGCCAAAACTGGAGCCATGTAAGCCATGGCATTACTCTGGAACAATCAGCTGACTCTG-----AAACAG-------TTCTCGTTCACCGTGCACAGTGTGGGAG-GTGTTTCCCAGTTTGGtagcgaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82425739 344 + 85787240 atatGCATGAATAAGTGCTGCAATTAACGGGCTGTGGCATGAACGAGGTGTGTGAATCGGAATCACTCACCCCACCAATTTCAGCTTCTCTGTCTTCATATTTCTGCATGGAACTTGGCCTAGAATAGATCTAAGGACTTTTCTAGCTCCT---------TTTTGAAAAA--TTGCTTTCTGAGTTGTGTAGGATTTGGTATTCCTGCAGTTGGTAAACAAAATACAAAGTTTGGTGTCAAGTCAAAACTGGAACCATGTAAGCCATGTCATTACTCTGGAACAATCAGCTGACTCTT-----AAACAA-------TTCTCGTTCACCATGCACAGTGTGGGAA-GTTTTTCCCAGTTTGGTAGCGAA i chlSab2.chr25 C 0 I 318 s calJac3.chr19 14106061 349 - 49578535 GTATGCATGAATAAGTGCCACAATGAActggctgtggtatgagccaggtgtgtgaatccggataactcagtccgccaatctggacctcagcatcttcatatgtacatgtggaacttagcctggaatagatctgaggactttgccagctcca---------ttttttaaAAGGTTGCTTTCTGAGTTGTGTAGGATTTGGTGTTTCTGCAGTTGGTAAACAGAATACAAAGTTTGATGTCAGGG-AAAACTGGAACCGTGGAAGCCACTGCATCACTCTGGAGCAAGCAGCTGACTCTTAAACAAAACAA-------TTCTTGTTTACCATTGACAGTTTGGGAA--TTTTTCCCACTTTGGCAGGGAA i calJac3.chr19 I 469 C 0 s mm10.chr1 178704204 220 + 195471971 ---------------------------------------------ACAGGTGTCAATAGACAT--------------------------------------------ATAAAACTTGGTCTAGTATA----TAAGAGCTTTTCTGGCTCTT---------------------TTTTTTTTTTGATTGTGCAGAATTTTCCATTTCTTCAGTTGGTAAACAGAAAATA-----TGAGATGAAGTCAAAACCGGAACCACGTAGGGCAGTGCATCA---TGGGTCAGTCAGCTGACCACA-----CGTCAG-------TCCTTGTTCACCC------------GAG--TGGTTTCAGTGCTAGTGGGTAA i mm10.chr1 I 1 I 1 s canFam3.chr7 36284741 327 + 80974532 ATATACACAAATGAGTATGGAAATTAAc---------cacaaagtagatatgtaatttagggcaactcacctcatcaatctggccctgagtctcttcatatttacacatgagcattggcctaagatagatctaaagatatttccagttcCATTTGAAATTTTTTGGAAAA--TTGCTGTTTGCATAGTGTCAGATTTGGCATTTCTGCAGCTGGTAAGCAGAA----------GATGTCAGGTC--AGTTCAAAGTGTGAAAGCTTGTGCATCGCTTTGAAACAGCCAGGTGACTCTT-----AAAGAAAATCAGTTTCTCGTCCACCATGGATGGTTTGAGAC-------------ATGGTGGGGAA i canFam3.chr7 C 0 C 0 a score=23849.000000 s hg38.chr1_KI270759v1_alt 100284 10 + 425601 --TTTCTTTTTT s panTro4.chr1 224849938 10 + 228333871 --TTTCTTTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226207438 10 - 229942017 --TTTATTTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140098824 10 - 143122389 --TTTATTTTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16815681 10 - 229590362 --tttttttttt i rheMac3.chr1 C 0 I 321 s macFas5.chr1 223576069 10 - 227556264 --tttttttttt i macFas5.chr1 C 0 I 317 s papAnu2.chr1 16627143 10 - 220367699 --tttttttttt i papAnu2.chr1 C 0 I 314 s chlSab2.chr25 82426401 10 + 85787240 --TTTTTTTTTT i chlSab2.chr25 I 318 C 0 s calJac3.chr19 14106410 10 - 49578535 --TTTATGTTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178704425 9 + 195471971 --GTTATTGCT- i mm10.chr1 I 1 C 0 s canFam3.chr7 36285068 11 + 80974532 CGTTTTTTGTT- i canFam3.chr7 C 0 C 0 a score=3913.000000 s hg38.chr1_KI270759v1_alt 100294 2 + 425601 GT s panTro4.chr1 224849948 2 + 228333871 GT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226207448 2 - 229942017 GT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140098834 2 - 143122389 GT i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82426411 2 + 85787240 GG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14106420 2 - 49578535 GT i calJac3.chr19 C 0 C 0 s mm10.chr1 178704434 2 + 195471971 GT i mm10.chr1 C 0 C 0 s canFam3.chr7 36285079 2 + 80974532 GT i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16815691 321 - 229590362 I e papAnu2.chr1 16627153 314 - 220367699 I e macFas5.chr1 223576079 317 - 227556264 I a score=19877.000000 s hg38.chr1_KI270759v1_alt 100296 8 + 425601 CATTTTTG s panTro4.chr1 224849950 8 + 228333871 CATTTTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226207450 8 - 229942017 CATTTTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140098836 8 - 143122389 CATTTTTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223576396 8 - 227556264 CATTTTTG i macFas5.chr1 I 317 C 0 s papAnu2.chr1 16627467 8 - 220367699 catttttg i papAnu2.chr1 I 314 C 0 s chlSab2.chr25 82426413 8 + 85787240 CGTTTTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14106422 8 - 49578535 GATTTTTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178704436 8 + 195471971 TGTCTCTT i mm10.chr1 C 0 I 5 s canFam3.chr7 36285081 8 + 80974532 CATCAATG i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16815691 321 - 229590362 I a score=796596.000000 s hg38.chr1_KI270759v1_alt 100304 243 + 425601 ATATGTTTGTATGTTTTTGCACAAAGGCCACTCAAAGGTTAAGTC--GGG---GCATTTTTTAGAGATGTAATGGGAATATCT-GTAAATGGTCCTGCTTTAGACTGGATTATGACTTTAGGAAGCACAGGGCAC----GTTCAGCCGCATGGCCCTCCAGTCATCCTATGTGCAGTCTCACACGTTCCCCACTCtgggg-aaattgaggcaaagagaggggagatgagtcgcccatagcctcccTTGTTGCTC- s panTro4.chr1 224849958 243 + 228333871 ATATGTTTGTATGTTTTTGCACAAAGGCCACTCAAAGGTTAAGTC--GGG---GCATTTTTTAGAGATGTAATGGGAATATCT-GTAAATGGTCCTGCTTTAGACTGGATTTCAGCTTTAGGAAGCACAGGGCAC----GTTCAGCTGCATGGCCCTCCAATCATTCTATGTGCAGTCTCACACGTTCCCCACTCTGGGG-AAATTGAGGCAAAGAGAGGGGAGATGAGCTGCCCATAGCCTCCCTTGTTGCTC- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226207458 245 - 229942017 ATATGTTTGTATGTTTTTGCACAAAGGCCACTCAAAGGTTAAGTCAGGGG---GCATTTTTTAGAGAGGTAATGGGAATATCT-GTAAATGTTCCTGCTTTAGATTGGATTATGACTTTAGGAAGCACAGGGCAC----ATTCAGCCGCATGGCCCTCCAATCATCCTATGTGCAGTCTCACACGTTTTCCTGTCtgggg-aaattgaggcaaagagaggggaaatgactcgcccaCAGCCTCCCATGTTGCTC- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140098844 244 - 143122389 ATATGTTTGTATGTTTTTGCACAAAGGCCACTCAAAGGTTAAGTCA-GGG---GCATTTTTTAGAGATGTAATGGGAATATGT-GTAAATGTTCCTGCTTTGGATTGGATTATGACTTTAGGAAGCACAGGGCAC----GTTCAGCCGCATGGCCCTCCAATCATCCTATGTGCAGTCTCACACGTTCCCCTCTCtgggg-aaattgaggcaaagagaggggaaatgactcgcccaCAGCCTCCCATGTTGCTC- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16816012 242 - 229590362 ATATGTTTGTATGTTTTTGCACAAAGGCCACTCAAAAGTTAAGTC--GGG---GCATCTTTTAGAGATGTCATGGGAAAATCT-GTAAATGTTCCTGCTTTAGATTGGATTATGACTTTAGGAAGCACAGGGCAT----GTTCAGCCACATGG-CCTCCGATCATCCTATGTGCAGTCTCACACGTTCCCCTCTCTGGGG-AAATTGAGGCAAGGAGAGGGGAAATGACTCACCCACAGCTTCCCATGTTGCTC- i rheMac3.chr1 I 321 C 0 s macFas5.chr1 223576404 242 - 227556264 ATATGTTTGTATGTTTTTGCACAAAGGCCACTCAAAAGTTAAGTC--GGG---GCATCTTTTAGAGATGTCATGGGAAAATCT-GTAAATGTTCCTGCTTTAGATTGGATTATGACTTTAGGAAGCACAGGGCAT----GTTCAGCCACATGG-CCTCCGATCATCCTATGTGCAGTCTCACACGTTCCCCTCTCtgggg-aaattgaggcaaggagaggggaaatgactcacccacagcttcccaTGTTGCTC- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16627475 243 - 220367699 atatgtttgtatgtttttgcaCAAAGGCCACTGAAAAGTTAAGTCA-GGG---GCATCTTTTAGAGATGTCATGGGAATATCT-GTAAATGTTCCTGCTTTAGATTGGATTATGACTTTAGGAAGCACAGGGCAT----GTTCAGCCACATGG-CCTCCGATCATCCTATGTGCAGTCTCACACGTTCCCCTCTCTGGGG-AAATTGAGGCAAGGAGAGGGGAAATGACTCGCCCACAGCTTCCCATGTTGCTC- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82426421 242 + 85787240 ATATGTTTGTATGTTTTTGCACAAAGGCCACTCAAAAGTTAAGTC--GGG---GCATCTTTTAGAGATGTAATGGGAATATCT-GTAAATGTTCCTGCTTTAGATTGGATCATGACTTTAGGAAGCACAGGGCAT----GTTCAGCCGCATGG-GCTCCAATCATCCTATGTGCAGTCTCACACGTTCCCCTCTCtggag-aaattgaggcaaggagaggggaaatgacctgcccacagcctcccaTGTTGCTC- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14106430 239 - 49578535 ATATGTT----TGTTTTTGCACAGAGGACACTCAAATGTTAAGTCA-GGA---GCATATTTTAGAGATGTCATGGGAATCTCTCTTAACTGTTCCCGCTTTATGTGTGATTATGACTTTAGGAAGCACAGGGCACACATACTGAGCAGCATGC-CCTCCGGCCATCCCATGGGCA-TCTCACAAGGTCCCCTCCCTGgggaaaactggggctaagagaggggaagtgactcacccaCAGCCTCCCATGC------ i calJac3.chr19 C 0 I 263 s mm10.chr1 178704449 227 + 195471971 GCGTGTTCATAAGGTTTCACATAAAGGCCACTGAAAGGCTGAGTA--AGG---ATAAACTTAAG-GATGTCATT---ATATTT-TTAAATGTTCTCGCTTTGTGTTTCATTATGGCTT---AGACCACAGGGCAC----ACTCAGCCA------TGTTCTGTCATTTCAT-TCCAGATATACCAGCTCCCCTCACTGGGG-AAACTGGGCTA--GATTAGGAAACTGATTTATTCAAAGCTTCCAATTTTGTTC- i mm10.chr1 I 5 C 0 s canFam3.chr7 36285089 244 + 80974532 ATGTATTTGTATGTTTTTGTATAAAGGCCATGCAGATATTAAATT--AGGAATGCACTTTTCA-AGATGAAACAGGAGTATTT-CTAAACGTCCCGGCTGTCTGTTGGATTATGACTTTA-GAACCACAGAGCAC----ATTCAGCTGCATCA-TCTGATTTCATCGCAGACATGatctcctgatttcccctagctgggg-agatgagggctaggggaggggaagtgacttgtccaaagtcCATCGTGTTACCAT i canFam3.chr7 C 0 C 0 a score=578680.000000 s hg38.chr1_KI270759v1_alt 100547 155 + 425601 CCACCAAGCCAGGCCC--AGAATTAGTTCCTAACACTTA---ATGTaacgtttaccaggggcctgatgcctgacacaccctttgctaggcactaggattacagtgacaagttaatttggtccagcctgtctccaATTTGGGCATC--TCCTTCGTGGCTGTG s panTro4.chr1 224850201 155 + 228333871 CCACCAAGCCAGGCCC--AGAATTAGTTCCTAACACTTA---ATGTAACGTTTACCAGGGGCCTGATGCCTGACACACCCTTTGCTAGGCACCAGGATTACAGTGACAATTTAATTTGGTCCAGCCTGTCTCCAATTTGGGCATC--TCCTTCGTGGCTGTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226207703 155 - 229942017 CCACCAAGCCAGGCCC--AGAATTAGTTCCTAACACTTA---ATGTaacatttaccaggggcctgatgcctgacacaccctttgctaggcactaggattacagtgACAATTTAATTTGGTCCAGCCTGTCTCCAGTTTGGGCATC--TCCTTCGTGGCTGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140099088 155 - 143122389 CCACCAAGCCAGGCCC--AGAATTAGTTCCTAAcactta---acgtaacatttaccaggggcctgatgcctgacacaccctttgctaggcactaggattatagtgACAATTTAATTTGGTCCAGCCTGTCTCCAATTTGGGTATC--TCCTTCCTGGCTGCG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16816254 155 - 229590362 CCACCAAGCCAGGCCC--AGAATTAGTTCTTAAcactta---atgcaaaatttaccacgggcctgatgcctgacacaccctttgctaggcactgggattacagtgACAATTTGATTTGGTCCAGCCTGTCTCCGATTTGGGCATC--TCCTTCGTGGCTGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223576646 155 - 227556264 CCACCAAGCCAGGCCC--AGAATTAGTTCTTAAcactta---atgcaaaatttaccacgggcctgatgcctgacacaccctttgctaggcactgggattacagtgACAATTTGATTTGGTCCAGCCTGTCTCCGATTTGGGCATC--TCCTTCGTGGCTGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16627718 155 - 220367699 CCACCAAGCCAGGCCC--AGAATTAGTTCTTAACACTTA---ATGCAAAATTTACCACGGGCCTGATGCCTGACACACCCTTTGCtaggcactgggattacagtgacAATTTGATTTGGTCCAGCCTGTCTCCGATTTGGGCATC--TCCTTCATGGCTGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82426663 155 + 85787240 CCACCAAGCCAGGCCC--AGAATTAGTTCTTAACACTTA---ATGCAGCATTTACCAGGGGGCTGATGCCTGACACACCCTTTGCTAGGCACTGGGATTACAGTGACAATTTGATTTGGTCCAGCCTGTCTCCGATTTGGGCATC--TCCTTTGTGGCTGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14106932 153 - 49578535 ccaccacacccagccCCTAGAATTGGTTCTTAACACTTAATGATGCCACATTGACCAGAGGCCTGCTGCCTGACCTGCCCTTTGCTAGGCACTGG-------GTGTCAATCTGATTTGGTCCAGCCTGTCTCCAGTTTAGCCATC--GCCTTCACGGCTGTG i calJac3.chr19 I 263 C 0 s mm10.chr1 178704676 145 + 195471971 CAACTGAGCCAGCCCC--ACAA-TAGTTCTTCTTAGTCC---GTACAGCATTAACTGAGGGTCCAGTGCCTGCCACACCCTTTTCCAGACACTGGGATGACAATACCAATTCCATTCGGTCCAGCCTGCCTCTGGCTTG-----------TTTCTGGCTATG i mm10.chr1 C 0 C 0 s canFam3.chr7 36285333 157 + 80974532 TAACCAAGCCAGGCCC--AGAATTAGCCCTTGGCATTCA---GTGCAGCATTTACTGATGCCCTGATGCACCACACACCCTTTGCTAGACACCAGGGTGATGCTGGCAATTCCATTTTGTCCAGCCTGTCTGTGGTCTGGGTATCTTTCCTTTATGGCtgtg i canFam3.chr7 C 0 I 629 a score=2423.000000 s hg38.chr1_KI270759v1_alt 100702 2 + 425601 GT s panTro4.chr1 224850356 2 + 228333871 TT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226207858 2 - 229942017 AT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140099243 2 - 143122389 AT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16816409 2 - 229590362 AC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223576801 2 - 227556264 AC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16627873 2 - 220367699 AC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82426818 2 + 85787240 AC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14107085 2 - 49578535 AT i calJac3.chr19 C 0 C 0 s mm10.chr1 178704821 2 + 195471971 AT i mm10.chr1 C 0 I 413 e canFam3.chr7 36285490 629 + 80974532 I a score=25145.000000 s hg38.chr1_KI270759v1_alt 100704 11 + 425601 ATGGAGTGGCT s panTro4.chr1 224850358 11 + 228333871 ATGGAGTGGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226207860 11 - 229942017 GTGGAGTTTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140099245 11 - 143122389 GTGGACTTGCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16816411 11 - 229590362 GTGGGGTTGCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223576803 11 - 227556264 GTGGGGTTGCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16627875 11 - 220367699 GTGGGGTTGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82426820 11 + 85787240 GTGGGGTTGCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14107087 11 - 49578535 GTGGGGTTTCC i calJac3.chr19 C 0 C 0 e mm10.chr1 178704823 413 + 195471971 I e canFam3.chr7 36285490 629 + 80974532 I a score=1177948.000000 s hg38.chr1_KI270759v1_alt 100715 337 + 425601 CAGGGTATAATGCACTGCTGGTTGCCTTGAAAGTTTCCCAAGCATTAGCCAAGACTTAGGTGAAGAACTTGGACATGGAGGTGACGTAGGCCCTGGGAAGGGACTG---CCTAAAGATGTATGTTCATGGGCTCCACAGACAAGAAA----GACATGGCAGATTAAACATGGATAGAAAAGGGCATGATGTGTATTAGAATTAAATGCTGCAGCAGTTCCA-GCTAATCTAAT-TTCAGTCTCTTAATCTCATTGTCTTTCCCCTTGGCAGCATAACTAATAAACAATGCCACTCTGCAACAGTTACATAAAGCACGTATTCA-ATAGTCAAAAATTCCAAGCTCTT s panTro4.chr1 224850369 337 + 228333871 CAGGGTATAATGCACTGCTGGTTGCCTTGAAAGTTTCCCAAGCATTAGCCAAGACTTAGGTGAAGAACTTGGACATGGAGGTGACGTAGGCCCTGGGAAGGGACTG---CCTAAAGATGTATGTTCATGGGCTCCACAGACAAGAAA----GACATGGCAGATTAAACATGGATAGAAAAGGGCATGATGTGTATTAGAATTAAATGCTGCAGCAGTTCCA-GCTAATCTAAT-TTCAGTCTCTTAATCTCATTGTCTTTCCCCTTGGCAGCATAACTAATAAACAATGCCACTCTGCAACAGTTACATAAAGCAAGTATTCA-ATAGTCAAAAATTCCAAGCTCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226207871 333 - 229942017 CAGGGTATAATGCACTGCTGGTTGCCTTGAAAGTTTCCCAAGCATTAGCCAAGACTTAGGTGAAGAACTTGGACATGGAGGTGACGTA-GCCCTGAGAAGGGACCG---CCTAGAGATGCATGTTGATGGGCTCCACAGACAAGAAA----GACATGGCAGA-TAAACATGGATAGAAAAGGGCATGATCTGTATTAGAATTAAATGCTGCAGCAGTTCCA-GCTAATCTAAT-TTCAGTCTCTTAATCTCATTGTCTTTCCCCTTGGCAGCATAAC--ATAAACAATGCCATTCTGCAACAGTTACATAAAGCAAGTATTCA-AGAGTCAAAAATTCCAAGGTCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140099256 337 - 143122389 CAGGGTATAATGCACTGCTGGTTGCCTTGAAAGTTTCCCAAGCATTAGCCAAGACTTAGGTGAAGAACTTGGACAGGGAGGTGACGTAGGCCCTGGGAAGGGACCG---CCTAGAGATGCATGTTGATGGGCTCCACAGACAAGAAA----GACATGGCAGATTAAACATGGATAGAAAAAGGCATGATCTGTATTAGAATTAAATGCTGCAGCAGTTCCA-GCTAATCTAAT-TTCAGTCTCTTAATCGCATTGTCTTTCCCCTTGGCAGCATAACTAATAAACAATGCCATTCTGCAACAGTCACATAAAGCAAGTATTCA-ATAGTCAAAAATTCCAAGCTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16816422 338 - 229590362 CAGGGTATAACACTCTGCTGGTTGCCTTGAACGTTTCCCAAGCATTAGCCAAGACTTAGGTGAAGAACTTGGACATGGAGGTGACGTAGGCCCTGAGAAGGGACCG---CCTAGAGATGCATGATGATGGGCTCCACAGGCAAGAAA----GACATGGCAGATTAAACATGGATGGAAAAGGCTATGATCTGTATTAGAATTAAATGCTGCAGCAGCTCCA-GCTAATCTAATGTTCAGTCTCTTAATCTCATTGTCTTTCCCCTTGGCAGCATAACTAATAAACAATGCCATTCTGCAAAAGTTATATGAAGCAAGTATTCA-ATAGTCAAAAATTCCAAGCTCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223576814 338 - 227556264 CAGGGTATAACACTCTGCTGGTTGCCTTGAACGTTTCCCAAGCATTAGCCAAGACTTAGGTGAAGAACTTGGACATGGAGGTGACGTAGGCCCTGAGAAGGGACCG---CCTAGAGATGCATGATGATGGGCTCCACAGGCAAGAAA----GACATGGCAGATTAAACATGGATGGAAAAGGCTATGATCTGTATTAGAATTAAATGCTGCAGCAGCTCCA-GCTAATCTAATGTTCAGTCTCTTAATCTCATTGTCTTTCCCCTTGGCAGCATAACTAATAAACAATGCCATTCTGCAAAAGTTATATGAAGCAAGTATTCA-ATAGTCAAAAATTCCAAGCTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16627886 338 - 220367699 CAGGGTATAACACTCTGCTGGTTGCCTTGAACGTTTCCGAAGCATTAGCCAAGACTTAGGTGAAGAACTTGGACATGGAGGTGACGTAGGCCCTGGGAAGGGACCG---CCTAGAGATGCATGATGATGGGCTCCACAGGCAAGAAA----GACATGGCAGATTAAACATGGATGGAAAAGGCTATGATCTGTATTAGAATTAAATGCTGCAGCAGCTCCA-GCTAATCTAATGTTCAGTCTCTTAATCTCATTGTCTTTCCCCTTGGCAGCATAACTAATAAACAATGCCATTCTGCAAAAGTTACATAAAGCAAGTATTCA-ATAGTCAAAAATTCCAAGCTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82426831 338 + 85787240 CAGGGTACAACGCTCTGCTGGTTGCCTTGAACGTTTCCCAAGCATTAGCCAAGACTTAGGTGAAGAACTTGGACATGGAGGTGACATAGGCCCTGGGAAGGGACCG---CCTAGAGATGCATGATGATGGGCTCCACAGGCAAGAAA----GACATGGCAGATTAAACATGGATGGAAAAGGCTATGATCTGTATTAGAATTAAATGCTGCAGCAGCTCCA-GCTAATCTAATGTTCAGTCTCTTAATCTCATTGTCTTTCCCCTTGGCAGCATAACTAATAAACAATGCCATTCTGCAAAAGTTATATGAAGCAAGTATTCA-ATAGTCAAAAATTCCAAGCTCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14107098 333 - 49578535 CAGGGCATAATGCACTGCTGGTGTCCTTGAAAGCTTCCCAAGCATTAGCCAAGACTTTAGTGAAGAACTCGGGAATGTAGGTGACATAGACCCTGGAAAGGGACTG---CTTAGAGATGCATGATGATGACCTTTCCCGACGAGAAA----GACATGAC-GGTTGAAC--TGATAGCAAAGGCCCTGATCTGTATGAGGATCAGACGCTGCATCAGTT-CA-GCTAATGGAACATTTGGCCTCCTAATCTTACTGT-GCTCCCCTTGGCAGCGTGTCTAATCAACAGCGCCATCCTGCAAAACTTACATGAAGCAAGTATTCA-ACAGTCAGAAATTCCAAGCTCTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178705236 311 + 195471971 cagctcatgATGCACCGTTGCTCTCTTGCAA-------CAAGCATT-GCTCAGATATAGACAAAGAGC-----------AGTGAC--AGACTCTGGAAG------T---CTTAGAGATACATCCTGATGACCTCTACAGACAAGAAA-----ACATGGCCGATTAAACATAAATGGAAAAGGCCATGATCTGTATTAGAATTAAATGCTACTGCAGTTCCA-GCTAATCTAATGTGTAGTCTCTTAATGTCGTTATATGTACCCTCGGCAGCATCACTAACAAACACAGCCATTTTGCAAGAGTTACATAGGGCCAGTATTCAGACATTTAGATCTGTCCAGCCTTT i mm10.chr1 I 413 C 0 s canFam3.chr7 36286119 287 + 80974532 CAGGCCATAATGCACAGCTGGTTTTCTTGAAAGCTTTCCAAGCATTAGGCAAGATTTAGGTGAAGAGC-----------AGTGACACTTGCTCTGGGAAAGAGCTGCTTCTTAAGGATGC----------------CAGACCAAACACCACGAGATG-----------ATGGGTGGAGAAGGCCATGATCTGT-------------GCTGTGTCAGCTCCAGGCAAACCTCACATCTAGTCTCTTAATCTTACTGTCCTTCCCCTTAGAAGCATCCCTAATACTCCATGTTCCTCTGCAAAA-TTACATAAAGCAAGTATTCAGACATTCAAAACTTCT-------- i canFam3.chr7 I 629 I 36 a score=97440.000000 s hg38.chr1_KI270759v1_alt 101052 27 + 425601 TTCTTCAAAGGTTAGGTCTATTTTTTA s panTro4.chr1 224850706 27 + 228333871 TTCTTCAAAGGTTAGGTCAATTTTTTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226208204 27 - 229942017 TTCTTCAAAGGTGAGGTCtatttttta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140099593 27 - 143122389 TTCTTCAAAGGTGAGGTCtatttttta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16816760 27 - 229590362 TTCTTCAAAGGTTAGGTCTATTTTTTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223577152 27 - 227556264 TTCTTCAAAGGTTAGGTCTATTTTTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16628224 27 - 220367699 TTCTTCAAAGgttaggtttatttttta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82427169 27 + 85787240 TTCTTCAAAGGTTAGGTCtatttttta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14107431 27 - 49578535 TTCTTCAAAGGTTAGGTCTATTTTTTA i calJac3.chr19 C 0 C 0 s mm10.chr1 178705547 27 + 195471971 GTCTTCCAAGCCTAGGGTTATTTTTTA i mm10.chr1 C 0 I 3 e canFam3.chr7 36286406 36 + 80974532 I a score=163586.000000 s hg38.chr1_KI270759v1_alt 101079 62 + 425601 ttttattttattacttatt--att---at--ttttttgagacagagtcttgccctgtcacccaggctgg s panTro4.chr1 224850733 62 + 228333871 ttttattttattatttatt--att---at--ttttttgagacagagtcttgccctgtcacccaggctgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226208231 64 - 229942017 ttttattttattatttatttattt---at--ttatttttgagacagtcttgccctgtcgcccaggctgg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140099620 62 - 143122389 ttttattttattatttatt--att---at--ttttttGAGGCAGAGTCTTGCTCTGTCACCCAGACTGG i nomLeu3.chr5 C 0 M 408 s rheMac3.chr1 16816787 64 - 229590362 TTTTAttttattatttatt--att---attattttttgatacagagtcttgccctgttgcccaggctgg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223577179 64 - 227556264 TTTTAttttattatttatt--att---attattttttgatacagagtcttgccctgttgcccaggctgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16628251 64 - 220367699 ttttattttattatttatt--agt---attattttttgatacagagtcttgccctgttgcccaggctgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82427196 67 + 85787240 ttttattttattatttgtt--attatgattattatttgatacagagtcttgccctgttgcccaggctgg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14107458 62 - 49578535 ttttattctattatttatt--gtt---at--ttttttgagacagggtcttgccctgttgcccaggctgg i calJac3.chr19 C 0 C 0 e mm10.chr1 178705574 3 + 195471971 I e canFam3.chr7 36286406 36 + 80974532 I a score=603851.000000 s hg38.chr1_KI270759v1_alt 101141 258 + 425601 agtgtagtggtgcgatctcggctcactgcagcttctgcctcccgggttcaagtgattcttctgcctcagcctcctgagtagctgggactacaggtgcgcaccaccacgcctggctaa-tttttgtatttttagtagagacaaggttttaccatgttggccaggctggtcttgaacccctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggatgacaggtgtaagccactgtgcccggccCAGGTCTA s panTro4.chr1 224850795 258 + 228333871 agtgtagtggtgcgatctcggctcactgcagcttctgcctcccgggttcaagtgattcttctgcctcagcctcctgagtagctgggactacaggtgcgcaccaccacgcctggctaa-tttttgtatttttagtagagacaaggttttaccatgttggccaggctggtctcgaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggatgacaggtgtaagccactgtgcccggccCAGGTCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226208295 256 - 229942017 agtgtagtggtgcgatcttggctcactgcagcttctgcctcccgggttcaagtgattcttctgcctcagcctcctgagtagctgggtctacaggtgcgcaccaccacacccggctaa--ttttgtgtttttagtagagatgaggttttaccatgttggccaggctggtctcgaactcctgacctcaagtgatctgcctgcc-tggcctcccaaagtgctgggttgacaggtgtaagccactgtgcccggccCAGGTCTA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16816851 258 - 229590362 agtgcagtggtgcgatctcggctcactgcagcttctgcctgccgggttcaagagattcttctgcctcagcctcccgagtagctgggactacaggtgtgcaccaccatgcatggctaa-tttttgtatttttagtagagacgaggttttaccatgttggccaggttggtctcgaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggatgacaggtgtgagccactgtgcccagccCAGGTCTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223577243 258 - 227556264 agtgcagtggtgcgatctcggctcactgcagcttctgcctgccgggttcaagagattcttctgcctcagcctcccgagtagctgggactacaggtgtgcaccaccatgcatggctaa-tttttgtatttttagtagagacgaggttttaccatgttggccaggttggtctcgaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggatgacaggtgtgagccactgtgcccagccCAGGTCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16628315 258 - 220367699 agtgcagtggtgcgatctcggctcactgcagcttctgcctgccgggttcaagagattcttctgcctcagcctcctgagtagctgggactacaggtgtgcaccaccatgcctggctaa-tttttatatttttagtagagacgaggttttaccatgttggccaggttggtctcgaactcctgacctcaagtgatctgcctgccttggcctcccaaagtgctgggatgacaggtgtgagccactgtgcccagcccaggtcta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82427263 258 + 85787240 agtgcagtggtgccatctcggctcactgcagcttctgcctgccaggttcaagagattcttctgcctcagcctcctgagtagctgggactacaggtgtgcaccaccatgcctggctaa-tttttgtatttttagtagagacaaggttttaccatgttggccaggctggtctcgaactcctgacctcaagtgatctgcctgccttggccttccaaagtgctgggatgacaggtgtcagccactgtgcccagccCAGGTCTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14107520 259 - 49578535 agtgcagtgatgggatcttggttcattacgacttctagctcttgggtttaagtgattctcccgtctcagcctctcaagtagctgggactacaggtgcctgccatcacacccggctaaatttttgtatttttagtagagacgaggtttcaccatgttggccaggctgttctggaactcctgacctcaagcgacctgcctgccttggcctcccaaagtggtgggatgacacgtgtgagAGAGTACGCTCAGCCCAGGTCTG i calJac3.chr19 C 0 C 0 e mm10.chr1 178705574 3 + 195471971 I e canFam3.chr7 36286406 36 + 80974532 I e nomLeu3.chr5 140099682 408 - 143122389 M a score=43676.000000 s hg38.chr1_KI270759v1_alt 101399 15 + 425601 TTTTTTAAATGGATA s panTro4.chr1 224851053 15 + 228333871 TTTTTTAAATGGATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226208551 15 - 229942017 TTTTTTAAATGGATA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16817109 15 - 229590362 TTTTTTAAATGGATA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223577501 15 - 227556264 TTTTTTAAATGGATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16628573 15 - 220367699 ttttttaaatggata i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82427521 15 + 85787240 TTTTTTAAATGGATA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14107779 15 - 49578535 TTTTTTAAGTGTATA i calJac3.chr19 C 0 I 308 s canFam3.chr7 36286442 15 + 80974532 TTTTTTTAATGGAAA i canFam3.chr7 I 36 C 0 e mm10.chr1 178705574 3 + 195471971 I e nomLeu3.chr5 140099682 408 - 143122389 M a score=5576.000000 s hg38.chr1_KI270759v1_alt 101414 2 + 425601 AA s panTro4.chr1 224851068 2 + 228333871 AA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226208566 2 - 229942017 AA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16817124 2 - 229590362 AA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223577516 2 - 227556264 AA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16628588 2 - 220367699 aa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82427536 2 + 85787240 AA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14108102 2 - 49578535 aa i calJac3.chr19 I 308 C 0 s canFam3.chr7 36286457 2 + 80974532 AG i canFam3.chr7 C 0 C 0 e mm10.chr1 178705574 3 + 195471971 I e nomLeu3.chr5 140099682 408 - 143122389 M a score=660021.000000 s hg38.chr1_KI270759v1_alt 101416 252 + 425601 AGAAAGAGGGTGGCTCAA----TTTTGTGACA-GG-GTCTTTAAATTTGTCAGTTTGTGCATTTCATCTTCTGGTGCCCCAGAGCTCTGAGTGTAGCTGAAACTCATGCCCGGTATGGGGAAGAACCGGGGCAGGGTGG-GGCCCTTTAGCCTCTGGGTTTGGTTTCTCCTCTCCTGGAACCTGTATTCCTATGATTACTTGCCCCATATTCCAGAGAATTC--CAGCTCTGCAGCTGTGGCTGTCG-CAT-CTCACACTCAA s panTro4.chr1 224851070 252 + 228333871 AGAAAGAGGGTGGCTCAC----TTTTGTGACA-GG-GTCTTTAAATTTGTCAGTTTGTGCATTTCATCTTCTGGTGCCCCAGAGCTCTGAGTGTAGCTGAAACTCATGCCTGGTATGGGGAAGAACCGGGGCAGGGTGG-GGCCCTTTAGCCTCTGGGTTTGGTTTCTCCTCTCCTGGAACCTGTATTCCTATGATTACTTGCCCCATATTCCAGAGAATTC--CAGCTCTGCAGCTGTGGCTCTCG-CAT-CTCACACTCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226208568 252 - 229942017 AGAAAGAGGGTGGCTCAA----TTTTCTGACA-GG-GTCTTTAAATTTGTCAGTTTGTACATTTCATCTTCTGGTGCCCCAGAGCTCTGAGTGTAGCTGAAACTCATGCCTGGTGTGGGGAAAAACCGGGGCAGGGTGG-GGCCCTTTAGCCTCTGGGTTTGGTTTCTCCTCTCCTGGAACCTGTATTCCTATGATTACTTGCCCCATATTCCAGAGAATTC--CAGCTCTGCAGCTATGGCTGTCG-CAT-CTCACACTCAC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16817126 251 - 229590362 AGAAAGAGGATGGCTCAA----TTTTGTGACA-GG-GTCTTTAAATTTGTCGGTTTGTACATTTCAGCTTCCAGTGCCCCAGAGCTCTGGTTGTAGCTGAAACTCATGCCTGGTATGGGGAAGAACCAGGGCAGGGTGG-GGGGCTTTAGCCTCTGGGCTTGGTTTCTCCTCTCCTGGAACCTGTA-TCCTATGTTTACTTGCCCCGTGTTCCAGAGAATTC--CAGCTCTGCAGCTCTGGCTGTCA-CAT-CTCACACTCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223577518 251 - 227556264 AGAAAGAGGATGGCTCAA----TTTTGTGACA-GG-GTCTTTAAATTTGTCGGTTTGTACATTTCAGCTTCCAGTGCCCCAGAGCTCTGGTTGTAGCTGAAACTCATGCCTGGTATGGGGAAGAACCAGGGCAGGGTGG-GGGGCTTTAGCCTCTGGGCTTGGTTTCTCCTCTCCTGGAACCTGTA-TCCTATGTTTACTTGCCCCGTGTTCCAGAGAATTC--CAGCTCTGCAGCTCTGGCTGTCA-CAT-CTCACACTCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16628590 251 - 220367699 agaaaGAGGATGGCTCaa----ttttgtgaca-gg-gtctttaAATTTGTCGGTTTGTACATTTCAGCTTCCAGTGCCCCAGAGCTCTGAGTGTAGCTGAAACTCATGCTTGGTATGGGGAAGAaccagggcagggtgg-ggggctTTAGCCTCTGGGCTTGGTTTCTCCTCTCCTGGAACCTGTA-TCCTATGTTTACTTGCCCCGTGTTCCAGAGAATTC--CAGCTCTGCAGCTCTGGCTGTCA-CAT-CTCACACTCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82427538 251 + 85787240 AGAAAGAGGATGGCTCAG----TTTTGTGACA-GG-GTCTTTAAATTTGTCGATTTGTACATTTCGTCTTCCAGTGCCCCAGAGCTCTGAGTGTAGCTGAAACTCATGCTTGGTATGGGGAAGAACCAGGGCAGGGTGG-GGGGTTTTAGCCTCTGGGCTTGGTTTCTCCTCTCCTGGAACCTGTA-TCCTATGTTTACTTGCCCCGTGTTCCAGAGAATTC--CAGCTCTGCAGCTATGGCTGTCA-CAT-CTCACACTCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14108104 256 - 49578535 agaaaGAGGATGGCTCGA---TTTTTGTGACA-GGAGTCCTTAAATTGGTCAGTTTGTACATTTCACCTTCTAGCACCCCAGCTCTCTGAGTGTGGCTGAAGCTCATGTCTGGCGTGGGGAAGAACGGGGGCAGGGTAG-GGGCCTTTCACCTCTGGGCTTGGATTCTCCTCTCAGGGAACCTGGATTCCTATGATTACTTG-TCCATATTCCAGAAAATTCCACAGCTCTCCCGCTACGGCTGTCA-CATGCTCACACTCAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178705577 241 + 195471971 AGGAGAACAACAGCTCAG-----TTTGTGAAATGG-GTCTCTGGTTTTCTGTGCTTGTGAGT-----CTTCTAGTACTACACGGCTCTGAGTTAAACTAAAAAGCATGTTTTCTGGAAGGAA-AACTGAGGCAGGGCAG-TGAGA-ATGGCCTCT-GACCTGATTTCTCCTCTCCTGGCTTCTGAGTTCTTATGGTCCTTGATCCCATTTTCT-GAGACTTC--CTGCTCT--AGCTGTGGCTGCAGCCAG-CCAGCACCAA- i mm10.chr1 I 3 C 0 s canFam3.chr7 36286459 227 + 80974532 GGAAAGAGAATGGCTCAATTTTTTTTTTTACATGA-ATCTTTACATTTTGCA-TTTCTGCATTTTATCTTCTGACACCTCAGGGTT----------CTAAAAGTCTTGTCTGGTACCGGGAAGGACCAGGGCAGGCCAGTGGGACTTCAGCCTCT---------------------GGATGCTATATCCCTGGGATCACTTCCCCAACATTCCAGAGAATTC--CAGCTCCCCGGCTATGACTGGCA-CATGCTCCTACCCAG i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140099682 408 - 143122389 M a score=254888.000000 s hg38.chr1_KI270759v1_alt 101668 79 + 425601 ACTGACTGAGATGAACAATTACTGGTTTTCTCTCCCCGC----TTCCCATCTC-TTTGTGTACAttgctttttgtttttctctt s panTro4.chr1 224851322 79 + 228333871 ACTGACTGAGATGAACAATTACTGGTTTTCTCTCCCCGC----TTCTCATCTC-TTTGTGTACATTGctttttgtttttctctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226208820 79 - 229942017 ACTGACTAAGATGAACAATTACTGGTtttctctccctgc----ttctcatctc-tttgtgtacattgctttttgtttttctctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140100091 79 - 143122389 ACTGACTGAGATGAACAATTACTGGTTTTCTCTCCCCGC----TTCTCATCTC-TTTGTGTACAttgctttttgtttttctctt i nomLeu3.chr5 M 408 C 0 s rheMac3.chr1 16817377 78 - 229590362 ACTGACTGAGGTGAACAATTACTGGTTTTCTCTCCCCA-----TTTTCACCTC-TTTGTGTACAttgctttttgcttttctctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223577769 78 - 227556264 ACTGACTGAGGTGAACAATTACTGGTTTTCTCTCCCCA-----TTTTCACCTC-TTTGTGTACAttgctttttgcttttctctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16628841 78 - 220367699 ACTGACTGAGGTGAACAATTACTGGttttctctcccca-----ttttcacctc-tttgtgtacattgctttttgcttttctctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82427789 79 + 85787240 ACTGACTGAGGTGAACAATTACTGGTTTTCTCTCCCCAT----TTTTCACCTC-TTTGTGTACAttgctttttgcttttctctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14108360 69 - 49578535 ACTGACTGAGACGAACCACGGCTGGTGTTCTCTCCCCAC----TTCTCATCTC-TCTATGTACACTGCTTTT----------GT i calJac3.chr19 C 0 C 0 s mm10.chr1 178705818 70 + 195471971 GCTGACAGAGGGACACA------------CTCTCCCTGCTTCATTTTCCACCC-CTTATGCAAATT-TTTATTGTTTGTCTCTT i mm10.chr1 C 0 I 10 s canFam3.chr7 36286686 77 + 80974532 GCTGGCC-AGAGGAACAGTTACTGGTGTCCTCTTCTT------TTTTCATCTTATGTGTGTATAtttctttctccttttctctt i canFam3.chr7 C 0 C 0 a score=2770033.000000 s hg38.chr1_KI270759v1_alt 101747 878 + 425601 --ttttcttccttctcccatttctctctt---tttctttttgttcttttttctctctttgttccttgtttgccctttcttcCCCGAATCCAGCAATTTGTCTTACTACCACTATATTGAATTATGTATAAGCCGAAGCATCTTAGTTCATTCAATAAAGCTTTCTGTACCCTATTCACCATGTTAAAAATCAAGTGAAAACAAAGTTTTATCCCTTAAAAACAAACAAAACTCCAA-CAACCCCAACCCAACTAAATTAAGTCCATTCCTATTTGTATACATCTGttaattaatgtatgaattaatgtatttattagataaattCCATATCCAGACAC-ATCCTAtactggtaa---tactaaggagaac-agacacagtccctaaggtcctaaggttgactatttacttggggagagagactgacaacaggcagttacaaagcaagAC--ATGCTGTAGGCCCTGGG-ATTGCATGGACAGTGTCCAC--------------TGTCA-----------GTGGAGTCCTGTGGAGGGGG-TGGCGCTGATCATTCAGTGCGGGGAACAAGTGGTCAAGAC--ATGCTTCCTGGGGCACTGGCTCTTGGTTGACTATTTGGGAGTGAGAAACAGTGGTAGCCTTTGCCCAATAGAAGAGCCGCCCCCAGGTGATTCTGTACA----------------------------TAGGAGCTGGCCTAGGAGTAGCCTCTGGCCTGACCCTGACATCAGGGTTGAGTTGATTAGGGTTGTGATTCCATCTTGACTACTCAGTCTGAATTTGCTGAGTTGCAAATTGAAAGTGAAATCAATTACATCCAGATTCAGACCATTTGATTTTATTTTCATTTGATCATAAACATCACAAAACACGGGATAGAGAGAGCCTATTGTGCTCAGTTATTCAAATAATCCTAATTATGATC s panTro4.chr1 224851401 878 + 228333871 --ttttcttccttttcccatttctctctt---tttctttttgttcttttgtctcgctttgttcctcgtttgcccttccttcCCCGAATCCAGCAATTTGTCTTACTACCACTATATTGAATTATGTATATGCCGAAGCATCTTAGTTCATTCAATAAAGCTTTCTGTACCCTATTCACCATGTTAAAAATCAAGTGAAAACAAAGTTTTATCCCTTAAAAACAAACAAAACTCCAA-CAACCCCAACCCAACTAAATTAAGTCCATTCCTATTTGTATACATCTGTTAATTAATGTATGAATTAATGTATTTATTAGATAAATTCCATATCCAGACAC-ATCCTAtactggtaa---tactaaggagaac-agacacagtccctaaggtcctaaggttgactatttacttggggagagagactgacaacaggcagttacaaagcaagAC--ATGCTGTAGGCCCTGGG-ATTGCACGGACAGTGTCCAC--------------TGTCA-----------GTGGAGTCCTGTGGAGGGGG-TGGCGCTGATCATTCAGTGCGGGGAACAAGTGGTCAAGAC--ATGCTTCCTGGGGCACTGGCTCTTGGTTGACTATTTGGGAGTGAGAAACAGTGGTAGCCTTCGCCCAATAGAAGAGCCGCCCCCAGGTGATTCTGTACA----------------------------TAGGAGCTGGCCTAGGAGTAGCCTCTGGCCTGACCCTGACATCAGGGTTGAGTTGATTAGGGTTGTGATTCCATCTTGACTACTCAGTCTGAATTTGCTGAGTTGCAGATTGAAAGTGAAATCAATTACGTCCAGATTCAGACCATTTGATTTTATTTTCGTTTGATCATAAACATCACAAAACACTGGATAGAGAGAGCCTATTGTGCTCAGTTATTCAAATAATCCTAGTTATGATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226208899 872 - 229942017 --ttttct---ttctcccatttctctctt---tttctttttgtccttttgtctcactttgttcctcgtttgccctttcttccCCGAATCCAGCAATTTGTCTCACTACCGCTATATTGAATTATGTATATGCCGAAACATCTTAGTTCATCCAATAAAGCTTTCTGTACCCTATTCACCATGTTCAAAATCAAATGAAAACAAAGTTTTATCCCTTAAAAACAAACAAAACTCCAA-CAACCCCAACCCAACTAAATTAAGTCCATTCCTATTTGTATACATCTGTTAATTAATGTATGAATTAATGtatttat----taaattccatatccagacactgtcctatgctggtaa---tactaaggagaac-agacacagtccctaaggtcctaggattgaccatttacttggggagagagactgacaacaggcagttacaaagcaagac--aCGCTGTAGGCCCTGGG-ATTGCACGGACAGTGTCCAC--------------TGTCA-----------GTGGAGTCCTGTGGAGGGGG-TGGCGCTGATCATTTAGTGCGGGGAACAAGTGGTCAAGAC--ATGCTTCCTGGGGCACTGGCTCTTGGTTGATTATTTGGGGGTGAGAAACAATGGTAGCCTTCCCCCAATAGAAGAGCCGCCTCCAGGTGATTCTGTACA----------------------------TAGGAGCTGGCCTAGGAGTAGCCTCTGGCCTGACCCTGACATCAGGGTTGAGTTGATGAGGGTTGTGATTCCATCTTGACTACTCAGTCTGAATTTACTGAGTTGCAAATTGAAAGTGAAATCAATTACATCCAGATTCAGACCATTTGATTTTATTTTCATTTGATCATAAACATCACAAAACACTGGATAGAGAGAGCCTATTGTGCTCAGTTATTCAGATAATCCTAATTACGATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140100170 855 - 143122389 --ttctct---ttctctcgtttctctctt---tttctttttgtccttttgtctcgctttgttccttgtttGCCCTTTCTTCCCCGAATCCAGCAATTTGTCTTACTACCACTATGTTGAATTATGTATATGCCGAAACATCTTAGTTCATTCAATAAAGCTTTCTGTACCCTATTCACCATGTTAAAAATCAAGTGAAAACAAAGTTTTATCCCTTAAAAACAA-------------------------AATTAAATTAAGTCCATTCCTATTTGTATACATCTGTTAATTAATGTATGAATTAATGtgtttattagataaattccatatccagacactgtcctatgctggtaatactactaagcagaac-agacacagtccctaagggcctagagttgaccatttacttggggagagagaccgacaacaggcagttacaaagcaagac--atGCTGTAGGCCCTGGG-ATTGCACGGACAGTGTCCAC--------------TGTCA-----------GTGGAGTCCTGTGGAGGGGG-TGGTGCTGATCATTCAGTGCGGGGAACAAGTGGTCAAGAC--ATGCTTCCTGGGGCACTGGCTCTTGGTTGACTATTTGGGAGTGAGAAACAATGGTTGCCTTCCCCCAATAGAAGGGCCGCCCCCAGGTGATTCTGTACA----------------------------TAGGAGCTGGCCTAGGAGTAGCCTCTGGCCTGACCCTGACATCAGGGTTGAGTTGATTAGGGTTGTGATTTCATCTTGACTACTCAGTCTGAATTTGCTGAGTTGCAAATTGAAAGTGAAATCAATGACATCCAGATTCAGACCATTTGATTTTATTTTCACTTGATCATAAACATCACAAAACACTGGATAGAGAGAGCCTATTGTGCTCAGTTATTCAAATAATCCTAATTATGATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16817455 871 - 229590362 --ttttcttctttctcccgtttctctc-----tttctttttgttc--ttgtctcgctttgttccttgtttgccctttcttccCCGACTCCAGCAATTTGTCTTACTACCACTATATTGAATTACGTATATGCCAAAACATGTTAGTTTATTCAATAAAGCTTTCTGTACCTTATTCACCATGTTAAAAATCAAGTGAAAACAAACGTTCATCCCTTAAAAAGAAACAGAACTCCAA-CAACCCCAACCCAACTAAATTAAGTCCATTCCTATTTTTATACATCTG----TTAATATATGAATTAATGtatttattagataaactctatatccagacactgtcctatgctggtaa---tattaaggagaac-agacatagtccctaaggtcctagggttgaccatttacttggggagagagactgacaacaggcagttacaaagcaagaC--GTGCTGTAGGCCCTGGG-ATTGCACTGACAGTGTCCAC--------------TGTCA-----------GTGGAGTGCTGTGAAGAGGG-TGGTGCTGATCCTTCAGTCCGGGGAACAAGCAGTCGAGAC--ATGCTTCCTGGGGCACTGGCTCTTGGTTGACTATATGGGGGTGAGAAACAACGGTAGCCTTCCCCCAATAGAAGAGCCACCCTCAGGTGATTCTGTACA----------------------------TAGGAACTGGCCTAGGAGTAGCCTCTGGCCCAGCCCTGACATCAGGGTTGAGTTGATTAGGGTTGTGATTTCATCTTGACTACTCAGTCTGAGTTTGCTGAGTTGCAAATTGAAAGTGAAAACAATTACATCCAGATTCAGACCATTTGATTTTATTTTCACTTGATTGTAAACATCACAAAACACTGGATAGAGAGAGCCTATTGTGCTCAGTTATTCAAATAATCCTAATTATGATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223577847 871 - 227556264 --ttttcttctttctcccgtttctctc-----tttctttttGTTC--TTGTCTCGCTTTGTTCCTTGTTTGCCCTTTCTTCCCCGACTCCAGCAATTTGTCTTACTACCACTATATTGAATTACGTATATGCCAAAACATGTTAGTTTATTCAATAAAGCTTTCTGTACCTTATTCACCATGTTAAAAATCAAGTGAAAACAAACGTTCATCCCTTAAAAAGAAACAGAACTCCAA-CAACCCCAACCCAACTAAATTAAGTCCATTCCTATTTTTATACATCTG----TTAATGTATGAATTAATGtatttattagataaactctatatccagacactgtcctatgctggtaa---tattaaggagaac-agacatagtccctaaggtcctagggttgaccatttacttggggagagagactgacaacaggcagttacaaagcaagaC--GTGCTGTAGGCCCTGGG-ATTGCACTGACAGTGTCCAC--------------TGTCA-----------GTGGAGTGCTGTGAAGAGGG-TGGTGCTGATCCTTCAGTCCGGGGAACAAGCAGTCGAGAC--ATGCTTCCTGGGGCACTGGCTCTTGGTTGACTATATGGGGGTGAGAAACAACGGTAGCCTTCCCCCAATAGAAGAGCCACCCTCAGGTGATTCTGTACA----------------------------TAGGAACTGGCCTAGGAGTAGCCTCTGGCCCAGCCCTGACATCAGGGTTGAGTTGATTAGGGTTGTGATTTCATCTTGACTACTCAGTCTGAGTTTGCTGAGTTGCAAATTGAAAGTGAAAACAATTACATCCAGATTCAGACCATTTGATTTTATTTTCACTTGATTGTAAACATCACAAAACACTGGATAGAGAGAGCCTATTGTGCTCAGTTATTCAAATAATCCTAATTATGATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16628919 873 - 220367699 --ttttcttctttctcccgtttctctctt---tttctttttgttc--ttgtctcgctttgttctttgtttgccctttcttctcCGACTCCAGCAATTTGTCTTACTACCACTATATTGAATTACGTATATGCCAAAACATGTTAGTTTATTCAATAAAGCTTTCTGTACCTTATTCACCATGTTAAAAATCAAGTGAAAACAAACtttcatctcttaaaaagaaacagaactccAA-CAACCCCAACCCAACTAAATTAAGTCCATTCCTATTTTTATACATCTG----TTAATGTatgaattaatgtatttattagatAAACTCCATATCCATACACTGTCCTATGCTGGTAA---TATTAAGGAGAAC-AGACACAGTCCCTAAGGTCCTAGGGTTGACCATTTACTTGGGGAGAGAGACTGACAACAGGCAGTTACAAAGCAAGAC--GTGCTGTAGGCCCTGGG-ATTGCACTGACAGTGTCCAC--------------TGTCA-----------GTGGAGTGCTGTGAAGAGGG-TGGTGCTGATCCTTCAGTCCGGGGAACAAGCAGTCGAGAC--ATGCTTCCTGGGGCACTGGCTCTTGGTTGACTATATGGGGGTGAGAAACAACGGTAGCCTTCCCCCAATAAAAGAGCCACCCTCAGGTGATTCTGTACA----------------------------TAGGAACTGGCCTACGAGTAGCCTCTGGCCCAGCCCTGACATCAGGGTTGAGTTGATTAGGGTTGTGATTTCATCTTGACTACTCAGTCTGAGTTTGCTGAGTTGCAAATTGAAAGTGAAAACAATTACATCCAGATTCAGaccatttgattttattttcacttgaTCATAAACATCACAAAACACTGGCTAGAGAGAGCCTATTGTGCTCAGTTATTCAAATAATCCTAATTATGATC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82427868 875 + 85787240 --ttttcttctttctcccgtttctctctt---tttctttttgttc--ttgtgtcgctttgttccttgtttgccctttcttCCCCGACTCCAGCAATTTGTCTTACTACCACTATATTGAATTACGTATATGCCAAAACATGTTAGTTTATTCAATAAAGTTTTCTGTACCTTATTCACCATGTTAAAAATCAAGTGAAAACAAACTTTCATCCCTTAAAAACAAACAGAACTCCAA-CAACCCCAACCCAACTAAATTAAGTCCATTCCTATTTTTACACATCTG----TTAATGTATGCATTAATGTATTTATTAGATAAACTCCACATccagacactgtcctatgctggtag---tactaaggagaac-agatacagtccctaaggtcctagggttgaccatttacttggggagagagactgacaacaggcagttacaaAGTGAGAC--GTGCTGTAGGCCCTGGG-ATTGCACTGACAGTGTCCAC--------------TATCA-----------GTGGAGTGCTGTGAAGAGGG-TGGTGCTGATCCTTCAGTCCGGGGAACAAGCAGTCGAGACATATGCTTCCTGGGGCACTGGCTCTTGGTTGACTATATGGGGGTGAGAAACAACGGTAGCCTTCCCCCAATAGAAGAGCCACCCCCAGGTGATTCTGTACA----------------------------GAGGAACTGGCCTAGGAGTAGCCTCTGGCCCAGCCCTGACATCAGGGTTGAGTTGATTAGGGTTGTGATTTCATCTTGACTACTCAGTCTGAGTTTGCTGAGTTGCAAATTGAAAGTGAAAACAATTACATCCAGGTTCAGACCATTTGATTTTATTTTCACTTGATCATAAACATCACAAAACACTAGATAGAGAGAGCCTATTGTGCTCAGTTATTCAAATAATCCTAATTATGATC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14108429 891 - 49578535 --TTTTCTTCCTTCTTATGCTTCTC-------TTTCTTTTTGTTCTTTTGTCTCGATTTGTTCCTTGTTTGCCCTTTCTTCCCCAACTCCAGCAGTTTGCCTTATTACCACTATATTGAGTTATGTAAATGCTGAAGCATCTTAGTTGAGTCAATAGAGCTTTCTGTACCCTATTCACGATATTCAGAACCAAGTGAAAACAAGCTTTTATCCCTTAGAAACAAACACGACTCCAA-CAACCCCATCCCGACTAAATGGAGTTCACCTCCATTTGCATGTATCTGTTAattcatgcatgaattaatgtatttgttagatatattccacatccagacactgtcctgtgctggtaa---tactgaggagaac-acacacagtccctgcggccctggggttgaccctttacttgcggagagatg--gacaagaggcaCCT-TAAAGCCAGAC--ATGCTGTAGGCTTTGGG-ATTGCAGTGACAGGGTCCGCGGGAATCACACTGATATCACGAGGACGGGCTTGGAGTCCTGTGG-GGGGC-TGGCG-TGCTCGCTCAGTGCAGGAAACAAGTAGTCAAGGC--ATGCATCCTGGGGCACTGGCTCTTGGTTCACTATTTGGGGGTGAGAAACAATGGTCACCTTCCCCTGGGAGAAGAGCCGCCCCCAGGTGATTCTGCGCA----------------------------CAGGAGCTGGCCTAGGAGTAGCCTCTGGTCCAACCCTGACATCAGGGTTGAGTTGATTAGGGTTGTCATTTCATCTTGACTACTCAGTCTGAGTTTTCTGAGTTGGAAATTGAAAGTAAAATCAATTATATCCAGATTCAGACCattttattttatttttatttgattataaaCATCACAAAACATGGGACAGAGAGAGCTTATTGTGCTCAGTTATTCAAAT----CTAATTTTGATC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36286763 872 + 80974532 gtttgtctcctttctcctgtttctctttttcctttgtttcagtgcctctgtctc--tttgttccttGTTTGCCCTCCATCCTCC----CCAGACATTTGTCTTGCT---GCTATCTTGAATTATG--------AAATACTCCTGTTTTATTGCAGAAAGCTTTATGTACTCTATTCATCGTTTTTGAAATCAGGTGAAAATAA-CATTTATCTCTTAAAAAACAAACCAACTCCAGCCAATACCAACCCAACAAAATT-AGTTCATTCTGATTCGCTTGTATTTA---ATGGATGTATTAATTGATGGATTTGTCAGATGTAGTCCAtattgagactctgtgctgtgctggaaa---tacagaggttagtaagagcctgtccctgtcctccctgagcttgcc-tctggttggggagagagaccagggccaggcagtcataaaataaACCAGATGCTCTGATACCAGAGCATCACAAGGATAG---------------------TTTGG-----------GGGGAACAC-GTGGAGAGGGACGGCCCTGATTATTCAGAGTGGGGAG-GACTGCCCAGGGC--ACACTTTTT-GGGCCCTAGCCTGTGATTGAGTATTTGGGAGTGGGCAGCAAAGGTAAGCTTCCCCCAGGGGAAGCGTAGCCCCTGGGTGATTCAGTACATGGAAGAGGGGTTAGTCTTCCTAGATCTTGGGAGCTGACCTAGAAGTAGCCT-----------CTGATGTCAGGGTTGGATTCATTAGGGTGGTGATTTCCTCTTAACTACTCCTTCTGAGTTTGCTTAGTTGGAAATTGAAAGTGAAGTCACTTATATCAATATTCAGACCATTTGATTTTATTTCAAGTTGGTCATAAAAATCACAAAGCACTGGAGAGAACATGCCTTTTGTGCCAATTGAG--AAATTATCCAGATGATGATC i canFam3.chr7 C 0 C 0 e mm10.chr1 178705888 10 + 195471971 I a score=28209.000000 s hg38.chr1_KI270759v1_alt 102625 18 + 425601 ACTCATTCAAATGATTC-T s panTro4.chr1 224852279 18 + 228333871 ACTCATTCAGATGATTC-T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226209771 18 - 229942017 ACTTATTCAAATGATTC-T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140101025 18 - 143122389 ACTTATTCAAATGATTC-T i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16818326 18 - 229590362 ACTTATTCAAATGATTCT- i rheMac3.chr1 C 0 I 400 s macFas5.chr1 223578718 17 - 227556264 ACTTATTCAAATGAttc-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16629792 17 - 220367699 ACttattcaaatgattc-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82428743 8 + 85787240 ACTTATTC----------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14109320 18 - 49578535 ACTTCTTGAAATGATTC-T i calJac3.chr19 C 0 C 0 e mm10.chr1 178705888 10 + 195471971 I e canFam3.chr7 36287635 0 + 80974532 C a score=43196.000000 s hg38.chr1_KI270759v1_alt 102643 47 + 425601 TAAATGAttct-------ttttttttttttttttttttttgaaacacagtcttg s panTro4.chr1 224852297 50 + 228333871 TAAATGAttctctt----ttttttttttttttttttttttgaaacacagtcttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226209789 39 - 229942017 TAAATGAttct---------------ctttttttttttttgaaacgcagtcttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140101043 36 - 143122389 TAAAT--CTCt----------------tttttttttttttgagacgcagtctta i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223578735 29 - 227556264 -------------------------tctttttttttttttgagatggagttttg i macFas5.chr1 C 0 I 348 s papAnu2.chr1 16629809 35 - 220367699 -------------------tctctttttttttttttttttgagacggagttttg i papAnu2.chr1 C 0 I 349 s chlSab2.chr25 82428751 46 + 85787240 -AAATGAttct-------ttttttttttttttttttttttgagacagagttttg i chlSab2.chr25 C 0 I 315 s calJac3.chr19 14109338 41 - 49578535 -------------TATGGtttgttttgatttattttttttgagactgagtcttg i calJac3.chr19 C 0 C 0 e mm10.chr1 178705888 10 + 195471971 I e canFam3.chr7 36287635 0 + 80974532 C e rheMac3.chr1 16818344 400 - 229590362 I a score=118122.000000 s hg38.chr1_KI270759v1_alt 102690 39 + 425601 ctctgtcacctaggctggagtgcagtggtgcgatctcag s panTro4.chr1 224852347 39 + 228333871 ctctgtcacctaggctggagtgcagtggtgcgatctcag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226209828 39 - 229942017 cgctgtcacctaggctggagtgcagtggtgcgatctcag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140101079 39 - 143122389 cgctgtcacctaggctggagtgcagtggtgcgatctcag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16818744 39 - 229590362 ctctgtcgcctaggctggagtgcagtggtgcgatctcag i rheMac3.chr1 I 400 C 0 s macFas5.chr1 223579112 39 - 227556264 ctctgtcgcctaggctggagtgcagtggtgcgatctcag i macFas5.chr1 I 348 C 0 s papAnu2.chr1 16630193 39 - 220367699 ctctgtcgcctaggctggagtgcagtggtgtgatctcag i papAnu2.chr1 I 349 C 0 s chlSab2.chr25 82429112 39 + 85787240 ctctgtcgcctaggctggagtgtagtgatgtgatctcag i chlSab2.chr25 I 315 C 0 s calJac3.chr19 14109379 39 - 49578535 ctttatcgcctagactggagtgcggtggtgccatcttgg i calJac3.chr19 C 0 T 3484 e mm10.chr1 178705888 10 + 195471971 I e canFam3.chr7 36287635 0 + 80974532 C a score=86407.000000 s hg38.chr1_KI270759v1_alt 102729 27 + 425601 ctcactgcaacctccgcctcctgggtt s panTro4.chr1 224852386 27 + 228333871 ctcactgtaacctccgcctcctgggtt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226209867 27 - 229942017 ctcactgcaacctccgcctcctgggtt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140101118 27 - 143122389 ctcactgcaacctctgcctcctgggtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16818783 27 - 229590362 ctcactgcaacctccgcctcctgggtt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223579151 27 - 227556264 ctcactgcaacctccgcctcctgggtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16630232 27 - 220367699 cttactgcaacctctgcctcctgggtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82429151 27 + 85787240 ctcactgcaacctctgcctcctgggtt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14105934 27 - 49578535 ctcactgcagcctccacctcttgggtt i calJac3.chr19 T 3484 I 3457 e mm10.chr1 178705888 10 + 195471971 I e canFam3.chr7 36287635 0 + 80974532 C a score=575842.000000 s hg38.chr1_KI270759v1_alt 102756 215 + 425601 caagcaatcctcctgtctcagcctcctgagtagctgggcttataggcacacgccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccatattggtcaggctggtcttgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgttggaattaccagcgtgagccaccgcgtccggccCCAAATGATTCTT s panTro4.chr1 224852413 215 + 228333871 caagcaatcctcctgtctcagcctcctgagtagctgggcttataggcacacgccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccatattggtcaggctggtcttgaactcctgacctcaggtgatccacccgcttcggcctcccaaagtgttgggattaccagcatgagccaccacgtccggccCCAAATGATTCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226209894 214 - 229942017 caagcaattctcctgtctcagccttctgagtagctgggcttacaggcacacgctaccacgcctggataatttttgtatttttagtagagacagggtttcaccgtattggtcaggctggtcttgaactcctgacatcaggtgatccacccgccttggcctcccaaagtgttgggattacaagtgtgagccaccacgtccggccCCAAATGATTC-T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140101145 214 - 143122389 caagcgattcccctgcctcagcctcctgagtagctgggcttataggcacacgccaccacacctggataatttttgtattttcagtagagacggggtttcaccgtattggtcaggctggtcttgaactcttgacctcaggtgatcc-cccgcctcggcctcccaaagtgttgggattaccagcgtgagccaccgcgtctggtcCCAAATGATTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16818810 214 - 229590362 caagtgattctcctgtctcagcctcccaagtagctgggcttacaagagcgcgctgccacgcccggttaatttttgtacttttggtagagacggagttttgccatgttggccaggctggtctcaaactccagaccctaagtgattcccccaccccggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccTCAAATGATTC-T i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223579178 214 - 227556264 caagtgattctcctgtctcagcctcccaagtagctgggcttacaagagcgcgctgccacgcccggttaatttttgtacttttggtagagacggagttttgccatgttggccaggctggtctcaaactccagaccctaagtgattcccccaccccggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagccTCAAATGATTC-T i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16630259 214 - 220367699 caagtgattctcctgtctcagcctcccaagtagctgggattacaagagcgcgccaccacgcccagttaatttttgtacttttagtagagacggagttttgccatgttggccaggctggtctcaaactccagaccctAAGTGATTcccccaccccggcctcccaaagtgctgggatgacaatcgtgagccaccgcgcccggcctcaaatgattc-t i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82429178 214 + 85787240 ctagtgattctcctgtctcagcctcccgagtagctgggcttacaagagcgcggcaccacgcccggttaatttttgtatttttagtagagacggggttttgccatgttggccaggctggtctcaaactccagaccctaagtgattcccccaccctggcctcccaaagtgctgggattacaagcgtgagccgccacgcccggccTCAAATGATTC-T i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14109418 214 - 49578535 caagcgattctcctgtctctgcctcctaagtagctgggcatataggagtgtgccaccatgcctgggtaatttttgtatttttagtagagacggggtttcgccatgttggccaccttgttctcaaactcctgacctcagatgatccacccgcctcagcctcccacagtactgggatgacaagtgtgagccaccatgcctggccTCAAATGATTC-T i calJac3.chr19 I 3457 C 0 e mm10.chr1 178705888 10 + 195471971 I e canFam3.chr7 36287635 0 + 80974532 C a score=239527.000000 s hg38.chr1_KI270759v1_alt 102971 100 + 425601 TTTTTTAAAATACAATCTTTTGCTGTTAGCACATTTTCTGAAGAGGGTGGCTCTACTT---GAGCCGTACATTCTCTGGATGATGTGGGCCTGAGCTGCCCAA s panTro4.chr1 224852628 100 + 228333871 TTTTTTAAAATACAATCTTTTGCTGTTAGCACATTTTCTGAAGAGGGTGGCTCTACTT---GAGCCATATGTTCTCTGGATGATGTGGGCCTGAGCTGCCCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226210108 100 - 229942017 TTTTTTAAAATACAATCTTTTGCTGTTAGCACATTTTCTGAAGAGGGTGGCTGTACTT---GAACTGTACATTCTCTGGATGATGTGGGCCTGAGCTGCCCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140101359 100 - 143122389 TTTTTTTAAATACAGTCTTTTGCTGTTAGCACATTTTCCGAAGAGGGTAGCTGTACTT---GAGCTGTACATTCTCTGGATGATGTGGGCCTGAGCTGCCCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16819024 84 - 229590362 TTTTTTAAAATAAAATCTTTTGCTGTCAGCACATGTTCTGGAGAGGGTAGCTGTACTT---GAGCTGCACATTCTCTCGATGATGTG---------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223579392 84 - 227556264 TTTTTTAAAATAAAATCTTTTGCTGTCAGCACATGTTCTGGAGAGGGTAGCTGTACTT---GAGCTGCACATTCTCTCGATGATGTG---------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16630473 84 - 220367699 ttttttaaaataaaatcttttgctGTCAGCACATGTTCTGGAAAGGGTAGCTGTACTT---GAGCTGCACATTCTCTCGATGATGTG---------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82429392 84 + 85787240 TTTTTTAAAATAAAATCTTTTGCTGTCAGCACATGTTTTGAAGAGGGTAGCTGTACTT---GAGCTGCACGTTCGCTCGGTGATGTG---------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14109632 100 - 49578535 TTTTTAAAAATAAAATGTTTTGCTATTAGCACATTTTCTGAAGAGGGTAGCCCTCCTT---GAGCTGTAGATTCTCTGGGTGATGTGGGCCTGAGCTGCCCAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36287635 80 + 80974532 CTCTTT---ATCAAGTCCTTTGCCGTTACCCCATTTCCTGAAT-GGGCAGCCACAGTTGAGGAGCTGTACTTTCTTGGGAGCAA------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178705888 10 + 195471971 I a score=264112.000000 s hg38.chr1_KI270759v1_alt 103071 120 + 425601 TATGAACTCAAGAGTAGCGAGAAACCAAGCCCACAGGCCTTATCTGCTCCAGGGCTTTTCCACCTGGCAGACGGAATTGAAGCTCTTACTCGATCGCAGTTgtgcctgcttcacagggtt s panTro4.chr1 224852728 120 + 228333871 TATGAACTCAAGAATAGCAAGAAACCAAGCCCACGGGCCTTATCTGCTCCAGGGCTTTTCCACCTGGCAGACAGAATTGAAACTCTTACTCGATCTCAGTTgtgcctgcttcacagggtt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226210208 120 - 229942017 TATGAACTCAGGAGTAGCGAGAAACCAAGCCCACAGGCCTCATCTGCTCCAGGGCTTTTCCACCTGGCTGACAGAATTGAAGCTCTTACTCGATCACTGTTgtgcctacttcatagggtt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140101459 120 - 143122389 TATGAACTCAAAAGTAGCGAGAATCCAAGTCCACGGGCCTCATCTTCTCCAGGGCTTTTCTGCCCGGCAGACAGCAGTGAAGCTCTTACTCgatcacagttgtgcctacttcatagggtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16819108 91 - 229590362 ----------------------------GCCCACGGGCCTTCCCTGCCCCAGGGC-TTTCCACGTGGCAGACAGAAGTGAAGCTCTTACTCCATCCCAGTTCtgcttacttcatagggtt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223579476 91 - 227556264 ----------------------------GCCCACGGGCCTTCCCTGCCCCAGGGC-TTTCCACGTGGCAGACAGAAGTGAAGCTCTTACTCCatcccagttctgcttacttcatagggtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16630557 91 - 220367699 ----------------------------GCCCACGGGACTTCCCTGCCGCAGGGC-TTTCCACGTGGCAGACAGAAGTGAAGCTCTTACTCCATCACAGTTCTGcttacttcatagggtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82429476 88 + 85787240 ----------------------------GCCCGTGGGCCTTCCCTGCTCCAGGGC-TTTCCATGTGGCAGACAGAAGTGAAGCTCTTACTCCATCACAGTTCtgcttacttcatagg--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14109732 109 - 49578535 GATAAACTCAAGAACAG-----------CCTCACCTGCCTCACCTGCCTCAGGGCCTTGCCAGGTGTCAGACAGAACCGAAGCTCTTACTTgatcacagttgagtctacttcacagggtt i calJac3.chr19 C 0 C 0 s mm10.chr1 178705898 110 + 195471971 TATCATCTCAAGGATAGAGACTGACCAAGGCCAATGGCATTCGTTGCTCCAGCGTTTTCCCATGCGGCAGA----GTTGATACCCTTG-TCGATAACAGTGGTG-----TTGACAGGATT i mm10.chr1 I 10 I 1730 s canFam3.chr7 36287715 112 + 80974532 GAGAAACTCAAGGATAG----AAACCCAGCCCTGTGACATTACCTGTCCCAGGGCTTTTCCATGTGGTAGA----GTTGATGCTATTTTTTggtaataattgtgcgtactttatagggtt i canFam3.chr7 C 0 C 0 a score=953853.000000 s hg38.chr1_KI270759v1_alt 103191 322 + 425601 gttgtcagtattaaatgtgtcaatacaaat--aaagctctcagaacagaagcccgctcatgg-taagtgctcaaAAGTGGCAATGG---------------------TGATAATGATGATCTATGAGCCCAC-CTG-TTTCACATCCTCAAAGGCCTCTGAGGCTGAAGCTGATCTCATCATGTCAACTGGACTCCTTGTTTCATTATACACC-CTGACTATGTCGCTGAAAACACCCCCCAAAACATCACTGAGGAATAAGTATTGAGAT---------CCAGCATACCTGCAAGGTGAATTCACATGCATATGTGCAAA-ACTGCAAGCTTCATGGTGGGA----CCATATCACCTCTTCT s panTro4.chr1 224852848 322 + 228333871 gttgtcaggattaaatgtggcaatacatat--aaagctctcagaacagaagccggctcatgg-taagtgctcaaAAGTGGCAATGA---------------------TGATGATGATGATCTATGAGCCCAC-CTG-TTTCACATCCTCAAAGGCCTCTGAGGCTGAAGCTGATCTCATCATGTCAACTGGACTCCTTGTTTCATTATACACC-CTGACTATGTCGCTGAAAACACCCCTCAAAACATCACGGAGGAGTAAGTATTGAGAT---------CCAGCCTACCTGCAAGGTGAATTCACATGCATATGTGCAAA-ACTGCAAGCTTCATGGTGGGA----CCATATCACCTCTTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226210328 322 - 229942017 gttgtcaggattaaatgtggcaatacatat--aaagctgttagaacagaagctggctcatgg-taagtgctcaaaagtggtaatga---------------------tgatGATGATGATCTGTGAGGCTGC-CAG-TTTCACATCCTCAAAGGCCTCTGAGGCTGAAGCTGATCTCATCATGTCAACTGGACTCCTTGTTTCATTATACACT-CTGACTATGTCACTGAAAACACCCCCCAAAACATCACTGAGGAATAAGTATTGAGAT---------CCAGCATACCTGCAAGGTGAATTCACATGCATATGTGCAAA-ACTACAAGCTTCATGGTGGGA----CCGTATCATCTGTTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140101579 320 - 143122389 gttgtcaggattgaatgtggcaatacatac--aaagctcttagaacagaagccggctcatggttaagtgctcaaaagtg---atga---------------------tgatgatGATGATCTGTGAGGCCGC-CTG-GTTCACATCCTCAAAGGCCTCTGAAACTGAAGCTGATCTCATCATGTCAACTGGACTCCTTGTTTCATTATACACCGCTGACTATGTCACTGAAAACACCCCCCAAAACATCACGGAGGAGTCAGTATTGAGAT---------CCAGCATACCCGC-AGGTGAATTCACATGCATATGTGCAAA-ACTACAAGCTTCATGGTGGGA----CCGTATCATCTGTTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16819199 326 - 229590362 gttgtcaggattaaatgtgacaatacatat--aaagctcttagaacagaagccggctcatgg-taagtgctcaaaagtggtaatga------------------tggtgatgatGATGACCTATGAGGCCGC-CTG-TTTCACGTCTTCAGAGGCCTCTGAGGCTGAAGCTGATCTCATCATGTCAACTGGACCCCTTGTTTCATTATACACC-CTGGCTGTGTCACTGAAAACCCACCCCAGAACATCACTGAGGAAGAAGTATTGAGAT---------CCAGCACACCTGCACGGTGAATTCACATGCATATGTGCAAATACCACAAGCTTCACGGTGGGA----CTGCGTCATCTGTTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223579567 326 - 227556264 gttgtcaggattaaatgtgacaatacatat--aaagctcttagaacagaagccggctcgtgg-taagtgctcaaaagtggtaatga------------------tggtgatgatGATGACCTATGAGGCCGC-CTG-TTTCACGTCTTCAGAGGCCTCTGAGGCTGAAGCTGATCTCATCATGTCAACTGGACCCCTTGTTTCATTATACACC-CTGGCTGTGTCACTGAAAACGCACCCCAGAACATCACTGAGGAAGAAGTATTGAGAT---------CCAGCACACCTGCACGGTGAATTCACATGCATATGTGCAAATACCACAAGCTTCACGGTGGGA----CTGCGTCATCTGTTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16630648 323 - 220367699 gttgtcaGGATTAAATGTGACAATACAtat--aaagctcttagaacagAAGCCGGCTCATGG-TAAGTGCTCAAAagtggtaatga---------------------tgatgatgatgacctATGAGGCCGC-CTG-TTTCACGTCTTCAGAGGCCTCTGAGGCTGAAGCTGATCTCATCATGTCAACTGGACTCCTTGTTTCATTATACACC-CTGGCTGTGTCACTGAAAACGCACCCCAGAACATCACTGAGGAAGAAGTATTGAGAT---------CCAGCACACCTGCATGGTGAATTCACATGCATATGTGCAAATACCACAAGCTGCACGGTGGGA----CTGTGTCATCTGTTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82429564 323 + 85787240 gttgtcaggattaaatgtgacaatacatat--aaagctcttagaacagaagccggctcatgg-taagtgctcaaAAGTGGTCATGA---------------------TGATGATGATGACCTATGAGGCCGC-CTG-TTTCACGTCTTCAAAGGCCTCTGAGGCTGAAGCTGATCTCATCATGTCAACTGGACTCCTTGTTTCATTATACACC-TTGACTGTGTCACTAAAAACTCGCCCCAAAACATCACTGAGGAAGAAGTATTGAGAT---------CCAGCACACCTGCACGGTGAATTCACATGCATATGTGCAAACACCACAAGCTTCACGGTGGGA----CTGTGTCATCTGTTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14109841 343 - 49578535 gttttcaggattaaatgcggcagtacatat--aaagctcttagaacag-agctggctcagga-taagtgctcaaAAGtggtgatggtgatggtgatggtgatggtgatggtgatggtgatggACGAGGCTGC-CTGATTTCACATCCTCAAAGGCCTCTCAGGCTGAAGCTCATCTCATCATGGCAACTGCTCTGTTTGTTTCCTTATGCACCACTGACTGTGTCACTGAAAACACACCCCAAAGCAGAGCTGAGGAGT--GTGTTGTGAT---------TCAGCACACCTGCAAGGTGAAGTCACATGCCTCTGTGGAAATGCTACAAACTTCCTGGTAGGA----CCGTGTCATGTGTTAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36287827 309 + 80974532 attgtcaggattggatatggcaacacatacagaaagctcttcgaatagaa-ttgggtcatgg-tagatgctcCAGAATGGCAA--A---------------------TTGTG-TGATGATTGATGAGGGAGTGCTG-TTGC---TCCTTAGAGTTCTCTCAGG------------------------CTGGACTCTGTGTATCATCTCATGTCACTGTTTATGTCACCAAAACCACCCCGCAAAACATAATTGAGTATTAATCATTAAAATCATTGTGCCCCAGCATCTCTGCAAGGTGAAGTAAAATGCACCTGTAGAAATACTCCAAGCTTGATGGCAAGAGTTTCTGTAGCATTTGTCAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178706008 1730 + 195471971 I a score=188732.000000 s hg38.chr1_KI270759v1_alt 103513 61 + 425601 AGGAGACTCTTTTTAAAAAGC-T---TGATCTC---T-------ATCTTAAGCCACACATGTTGGAACTAAGAAA s panTro4.chr1 224853170 61 + 228333871 AGGAGACTCTTTTTAAAAAGC-T---TGATCTC---T-------ACCTTAAGCCGCACATATTGGAACTTAGAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226210650 59 - 229942017 AGGAGACTC--TTTAAAAAGC-T---TGATCTC---T-------ACCTTAAGCTGCACGTGTTGGAAGTAAGAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140101899 61 - 143122389 AGGAGACTCTTTTTAAAAAGT-T---TGATCTC---T-------ATCTTAAGCCGCACATGTTGGAACTGAGAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16819525 59 - 229590362 AGGAGACTC--TTTAAAAAGC-T---TGATCTC---T-------ATCTGAAGCCGCACATGTTGGAACTAAGAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223579893 59 - 227556264 AGGAGACTC--TTTAAAAAGC-T---TGATCTC---T-------ATCTGAAGCCGCACGTGCTGGAACTAAGAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16630971 59 - 220367699 AGGAGACTC--TTTAAAAAGC-T---TGATCTC---T-------ACCTGAAGCCGCACATGCTGGAACTAAGAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82429887 59 + 85787240 AGGAGACTC--TTTAAAAAGC-T---TGGTCTC---T-------ACCTGAAGCCGCACATGCTGGAACTAAGAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14110184 58 - 49578535 AGGAGACTC---CTAAACAGT-T---TGATCTC---T-------ACCTTAAGCTGCACACATTGGAACTAAGAAG i calJac3.chr19 C 0 I 347 s mm10.chr1 178707738 65 + 195471971 AAAAGAGTCCTTTGGAAAGGCAC---TGAACTCCGGT-------GTCTTAGCCGGCACATGTTGGGAGTATGAAA i mm10.chr1 I 1730 C 0 s canFam3.chr7 36288136 69 + 80974532 AAGATGTTC--TTCAAAGGAA-TAGCCGAGCTA---TCACATGAGCCTTGAGCTGCACATTTTGGAACTAAGAAA i canFam3.chr7 C 0 C 0 a score=2512872.000000 s hg38.chr1_KI270759v1_alt 103574 645 + 425601 TCTAAGGGAGGAACCCCAGATAGAGATGCAGTTGGCCCTTTGCTGAA-------------TCTC---GGTCCTTCCTGGAGCA----GGCGGGCAGCCCTGCCCCTTTATCTTCTGGCAATACAAAGGATAAAAGAAAACAGTTATCAGGTGCTGAGGGGCCAGATCTGAGCCCCGATAATGGGAATCCTGAAACATGAGCAGCCTCTTCTGTTTGCAGAGTCTCATCATGCAAGGCAGA--GTGCTGGAGGTAgggctataaattgagggtgaaggaaaggcagccctcctaggccctgcgtat-cgccagt-tgtggaattctcttttgcaagaggtcactgagtcaaatgctgtggatggataattttatggccactaataaaatttatagccaaagcaagctaagataataagagtaatc-aaacgtccagccctgggacataagAATCCCATCCTGGCCTG-GGGTGCTGGCTG-GGGGTGCTGGACAGCACAGAGAGGAGTTTATCTGTCTGACTCAAGGCCAGC--------CTCAGAGTCTCAGAGGTGATTTGTGTCCACATGAACTGCGAGGACTAGGCCAGGTCTGGGGCAAGCTTCAGCTTGGGCAGTAACTGCTGTTTCTCTGCAGACAGCATGCCAACAGCAGCAGGAAAAA----GC--TATATCCTATTT s panTro4.chr1 224853231 645 + 228333871 TCTAAGGGAGGAACCCCAGATAGAGATGCAGTTGGCCCTTTGCTGAA-------------TCTC---GGTCCTTCCTGGAGCA----GGCGGGCAGCCCTGCCCCTTTATCTTCTGGCAATACAAAGGATAAAAGAAAACAGTTATCAGGTGCTGAGGGGCCAGATCTGAGCCCCGATAATGGGAATCCTGAAACATGAGCAGCCTCTTCTGTTTGCAGAGTCTCATCATGCAAGGCAGA--GCGCTGGAGGTAGggctataaattgagggtgaaggaaaggcagccctcctaggccctgtgtat-cgccagt-tgtggaattctcttttgcaagaggtcactgagtcaaatgctgtggatggataattttatggccactaataaaatttatagccaaagcaagctaagataataagagtaatc-aaacgtccagccctgggacataagAATCCCATCCTGGCCTG-GGGTGCTGGCTG-GGGGTGCTGGACGGCACAGAGAGGAGTTTATCTGTCTGACTCAAGGCCAGC--------CTCAGAGTCTCAGAGGTGATTTGTGTCCACATGAGCTGCGAGGACTAGGCCAGGTCTGGGGCAAGCTTCAGCTTGGGCAGTAACTGCTGTTTCTCTGCAGACAGCATGCCAACAGCAGCAGGAAAAA----GC--TATATCCTATTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226210709 647 - 229942017 TCTAAGGGAGGAACCCCAGACAGACATGCAGTTGGCCCTTTGCTGAA-------------TCTC---AGTCCTTCCTGGAGCA----GGTGGGCAGCCCTGCTCCTTTATCTTCTGGCAATACAAAGGATAAAAGAAAACAGTTATCAGGTGCTGAGGGACCAGATCCGAGCCCTGATAATGGGAATCCTGAAACATGAGCAGCCTCTTCTGTTTGCAGAGTCTCATCATGCAAGGCAGA--GTACTGGAGGTAGGGCTATAAATTGAGGGTGAAGGAAAGGCAGCCCTCCTAGGCCCTGCGTAT-CGCCAGT-TGTGGAATTCTCTTTTGCAAGAGGTCACTGAGTCAAATGCTGTGGATGGATAATTTTATGGCCACTAGTAAAATTTATAGCCAAAGCAAGCTAAGATAATAAGAGTAATC-AAATGTCCAGCCCTGGGACATAAGAATCCCATCATGGCCTG-GGGCGCTGGCTG-GGGGTGCTGGACGGCACAGAGAGGAGTTTATCTGTCTGACTCAAGGCCAGC--------CTCAGAGTCTCAGAGGTGATTTGTGTCCACATGAGCTGTGAAGACTAGGCGAGGTCTGGGGCAAGCTTCAGTTTGGGCAGTAACTGCTGTTTCTCTGCAGACAGCATGCCAACAGCAGCAGGAAAAA----GCTATATATCCTATTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140101960 645 - 143122389 TCTAAGGGAGGAACCCCAGACAGACATGCAGTTGGCCCGTGGCTGAA-------------TCTC---GGTCCTTCCTGGAGCA----GGCGGGCAGCCCTGCCCCTTTATCTTCTGGCAATACAAAGGATAAAAGAAAACAGTTATCAGGTGCTGAGGGGCCAGATCTGAGCCCCGATAATGGGAATCCTGAAACATGAGCAGCCTCTTCTATTTGCAGAGTCTCATCATGCAAGGCAGA--GCGCTGGAGGTAGggctataaattgagggtgaagaaaaggcagcccttctaggccctgcgtat-cgccagt-tgtggaattctcttttgcaagaggtcactgagtcaaatgctgtggatggataattttatggccactaataaaatttatagccaaagcaagctaagataataagagtaatc-aaacgtccagccctgggacataagAATCCCATCATGGCCTG-GGATGCTGGCTG-GGGGTGCTGGACGGCACAGAGAGGAGTTTATCTGTCTGACTCAAGGCCAGC--------CTCAGAGTCTCAGAGGTGATTTGTGTCCGCATGAGCTGTGAGGACTAGGCCAGGTCTAGGGCAAGCTTCAGCTTGGGCAGTAACTGCTATTTCTCTGCAGACAGCGTGCCAACAGCAGCAGGAAAAA----GC--TATATCCTATTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16819584 663 - 229590362 TCTAAGCGAGGAACCCCAAACAGACATGCAGTTGGCCCTTTGCTGAATC----CGGCA--TCTG---GGTCCTTCCTGGAGCAGGCAGGCGGGCGGCCCTGCCCCTTTACCTTCTGGCAACACAAAGGATGAAAGAAAACAGTTATCAGGTGCTGAGGGGCCCGATCTGAGCCCCGATAATGGGAATCCTGAAACATGAGC-GCCTCTTCTGTTTGCAGAGTGTCATCATGCAGGGCAGC--GCGCTGGAGGTAGggctataaattgagggtgaaggaaaggcagccctcctaggccctgcgtat-cgccagt-tgtggaattctcttttgcaagaggtcactgagtcaaatgctgtggatggataattttatggccactaataaaatttatagccaaagcaagctaagataataagggtcatc-aaacgtccagccctgggacataagaatcccatcatggcCTG-GGGTGCTGGCTG-GGGGTGCTGGACGGCACAGAGAGGAGTTTATCTGTCTGACTCAAGGCCAGCCTCAGAGTCTCAGAGTCTCAGAGGTGATTTGTGTCCACATGAGCTGCGTGGACTAGGCCAGGTCTGGGGCAGGCTTCAGCTTGGCCAGTAACTGCTGTTTCTCTGCAGACAGTATACCAACAGCAGCACGAAAAA----GC--TATATCTTATTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223579952 663 - 227556264 TCTAAGCGAGGAACCCCAAACAGACATGCAGTTGGCCCTTTGCTGAATC----CGGCA--TCTG---GGTCCTTCCTGGAGCAGGCAGGCGGGCGGCCCTGCCCCTTTACCTTCTGGCAACACAAAGGATGAAAGATTACAGTTATCAGGTGCTGAGGGGCCCGATCTGAGCCCCAATAATGGGAATCCTGAAACCTGAGC-GCCTCTTCTGTTTGCAGAGTGTCATCATGCAGGGCAGC--GCGCTGGAGGTAgggctataaattgagggtgaaggaaaggcagccctcctaggccctgcgtat-caccagt-tgtggaattctcttttgcaagaggtcactgagtcaaatgctgtggatggataattttatggccactaataaaatttatagccaaagcaagctaagataataagggtcatc-aaacgtccagccctgggacataagAATCCCATCATGGCCTG-GGGTGCTGGCTG-GGGGTGCTGGACGGCACAGAGAGGAGTTTATCTGTCTGACTCAAGGCCAGCCTCAGAGTCTCAGAGTCTCAGAGGTGATTTGTGTCCACATGAGCTGCGCGGACTAGGCCAGGTCTGGGGCAGGCTTCAGCTTGGCCAGTAACTGCTGTTTCTCTGCAGACAGTATACCAACAGCAGCACGAAAAA----GC--TATATCTTATTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16631030 655 - 220367699 TCTAAGGGAGGAACCCCAAACAGACATGCAGTTGGCCCTTTGCTGAATC----CGGCG--TCTG---GGTCCTTCCTGGAGCAGGCGGGCGGGCGGCCCTGCCCCTTTACCTTCTGGCAACACAAAGGATGAAAGAAAACAGTTATCAGGTGCTGAGGGGCCAGATCCGAGCCCCGATAATGGGAATCCTGAAACATGAGC-GCCTCTTCTGTTTGCAAAATGTCATCATGCAGGGCAGC--GTGCTGGAGGTAGGGCTATAAATTGAGGGTGAAGGAAAGGCAGCCCTCCTAGGCCCTGCGTAT-CGCCAGT-TGTGGAATTCTCTTTTGCAAGAGGTCACTGAGTCAAATGCTGTGGATGGATAATTTTATGGCCACTAATAAAATTTATAGCCAAAGCAAGCTAAGATAATAAGGGTCATC-AAACGTCCAGCCCTGGGACATAAGAATCCCATCATGGCCTG-GGGTGCTGGCTG-GGGGTGCTGGACGGCACAGAGAGGAGTTTATCTGTCTGACTCAAGGCCAGC--------CTCAGAGTCTCAGAGGTGATTTGTGTCCACATGAGCTGCGTGGACTAGGCCAGGTCTGGGGCAGGCTTCAGCCTGGCCAGTAACTGCTGTTTCTCTGCAGACAGCATGCCAACAGCAGCACGAAAAA----GC--TATGTCTTATTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82429946 656 + 85787240 TCTAACGGAGGAACCCCAAACAGACATGCAGTTGGCCCTTTGCTGAATC----CGGCG--TCTG---GGTCCTTCCTGGAGCAGGTGGGCGGGCGGCCCTGCCCCTTTACCTTCTGGCAACACAAAGGATAAAGGAAAACAGTTATCAGGTGCTGAGGGGCCAGATCTGAGCCCCGATAATGGGAATCCTGAAACATGAGCAGCCTCTTCTGTTTGCAGAGTGTCATCATGCAGGGCAGC--GCGCTGGAGGTAgggctataaattgagggtgaaggaaaggcagccctcctaggccctgcgtat-cgccagt-tgtggaattctcttttgcaagaggtcactgagtcaaatgctgtggatggataattttatgaccactaataaaatttatagccaaagcaagctaagataataagggtcatc-aaacgtccagccctgggacataagaatcccatcatggcctg-gggtcCTGGCTG-GGGGTGCTGGACGGCACAGAGAGGAGTTTATCTGTCTGACTCAAGGCCAGC--------CCCAGAGTCTCAGAGGTGATTTGTGTCCACATGAGCTGCACGGACTAGGCCAGGTCTGGGGCAGGCTTCAGCTTGGTCAGTAACTGCTGTTTCTCTGCAGACAGTATATCAACAGCAGCACGAAAAA----GC--TATATCTTATTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14110589 646 - 49578535 TCTAAGGGAGGAACCCCAAAGAGACATGCAGCTGGCCCTTTGCTGAATCCCGTCTGCA--TCTC---GGCCCTTCCTGGAGCA----GGCAGGTGG-CCTGTCCCTTTACCTTCTAGCAACACAAAGGCTAAAAGAAAACAGTTATCAGGTGCTGAGGGGCCAGATCTGAGCCCCGATAGTGAGAATCCTGAAACATGAGCAGCCTCTTCTGTTTGCAGAGTATCATCCTGCAGGGCAAA--GCGCTGGAGGTA-ggctataaattgagggtgaaggaaaggcagccctcccaggccc-gtgtat-ggccagt-tgtggaattctcttttgcaagaggtcactgagtcaaatgctgtggatggataattttatggccactaataaaatttatagccaaagcaagctaagataataagggtaatc-aaacgtccagccctgggacctaggaat-ccatcatggccggctggTGCTGGCTG-GGGGTGCTGAACAGCACAGAGCGGAG----TCTGTCTGACTCAAGGCCAGC--------CTCAGCGTCTC--AGGTGATTTGTGTCCCTGTGAGCTGCGAGGACTAGACCAGGCCTGGGGTGAGCTTCAGCCTGGGCAGTAACTTCTGTTTCTCTG-AGACAGCATGCTGACAGTGGCAAGAAAAT----GC--TGTATCCTATTA i calJac3.chr19 I 347 I 451 s mm10.chr1 178707803 650 + 195471971 TTTAAGAGAAGATTCCAAACTAGCAGCACAGCTGGCCCTGTGCTTTATC----GTGCT--CCCCGGGGGTCCTTCAGGAAGCA----GGCAGGTGGCCCTGCCCCTTTACCTTCTGGCAACACAAAGAATAAAAGTAAACAGTTCCCAGGTGCTGAGGGGCCAGATGTAAGCCCTGATAACGGCTATCATG--ACTTGAGCCTCCTCCTCCGTTTGCAGAGTCTCCCCACACagagaagactgtgaaggaggtaaggctataaattaaggg-aaagaaaaagctgccctcgtagacttcgtgtagactcccgt-tgtggaattctctgttgcaagaggtcactgagtcatatgctgtggatggataattttatggccactaataaaatttatagccaaagcaagctaagataataagggtaatcaaaATGTCCAGCCCTGGGATGGGAGATTCCCATCTTGGCCTG-CCGGGGTGGCT---GGGCACTGGCCAGCACAAGGAGGAACTTATCTGTGGGACTCAAGGCCACC-----------GGAATCCTAGAGGTGATTTGTGTGCATTGGAGCCTCGGAGACAGGGCCAGGCATGAGGCACGCTTCAAATGAGGTATTGAGTGATTGTGTTCTGTGGACAGCATTCTATAAACATTAAGAAATGAATTGC--TATATTT----- i mm10.chr1 C 0 C 0 s canFam3.chr7 36288205 618 + 80974532 TTTAAGACAGAAATTCAAGACAGAAATGCAGCCGGCCCTTTGCAAGATC----TCACACTTCTC---TGTCTTTTCTGTAACA----CGTGGATGCCCCTGCCACTTTACTTTTGCACCACCCAGAGAGT--AAGAAAACAGTGGGCAGGTGGCGAGGGGCCAGATTTCAGCCCCAACAATGA-AATCGTGAAATGTGA-CAGCCTTCTCTGTTGGCAAGACCC------------------TGGATGGAGGTGAGGCTGTAAATTGAAGGTGAAGAAAAGGCATCTCTCCTAGGCCCTGGGCAG-CACGAGCAAatggaattctcttttgcaagaggtcactgagtcaaatgctgtggatggataattttatggccactaataaaatttatagccaaagcaagctaagataataagggtaatc-aaacatccagccctgggacatgagAATCCCATCCTGGCCCCTTGGTGCTGGCCGAGGAGGGCTAGACAGTGCAGGGAGAAACTTACCGGTCTGACTCCAGGCCAGT--------GGCAGAGTCTCAGAGGTGATTTGTGCCCATTTTAGCTG-------------------AGGACGAGCTTCATGTTAGGTGGCAACAGCCTGTGCTTTGGGGACAGCGTCCCAAGCACTGTAGGAAAAC----TA--CCTGTCCTATGT i canFam3.chr7 C 0 C 0 a score=546241.000000 s hg38.chr1_KI270759v1_alt 104219 171 + 425601 AAATGCCTAAAAGCAAATCGTGAGCCT-------AAGAAAAGATCTGAACCACCCCAGCTCTGGAATACTACATTATGGAAGGAATGCTAACTGGTCATTCACGTGTGACTTGCCAGGTGTGAGGGAAGATAAAGAAGGATGCAAGTA-TTACTCATGCAAGTATAAAGAAATCAGATG s panTro4.chr1 224853876 172 + 228333871 AAATGCCTAAAAGCAAATCGTGAGCCT-------AAGAAAAGATCTGAACCACCCCAGCTCTGGAATACTACATTATGGAAGGAATGCTAACTGGTCCTTCACGTGTGACCTGCCAGGTGTGAGGGAAGATAAAGAAGGATGCAAGTAATTACTCATGCACGTATAAAGAAATCAGATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226211356 171 - 229942017 AAATGCCTAAAAGCAAATCGTGAGCCT-------AAGAAAAGATCTGAATCACCCCAGCTCTGGAATACTACATTATGGAAGGAATGCTAACTGGTCATTCACGTGTGACGTGGCAGGTATGAGGGAAGATAAAGAAGGATGCAAGTA-TTACTCATGCAAGTATAAGGAAATCAGATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140102605 171 - 143122389 AAAGGCCTAAAAGCAAATTGTGAGCCT-------AAGAAAAGATCTGAACCACCCCAGCTCTGGAATACTGCATTATGGAAGGAATGCTAACTGGTCATTCACGTGTGACTTGGCAGGTATGAGGGAAGACGAAGAAGGATGCAAGTA-TTACTCATGCAAGTATAAAGAAATCAGATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16820247 170 - 229590362 AAATGCCTAAAAGCAAATCGTGAGCCT-------AAGAAAAGATCTGAACCACCTCAGCTCTGGAATACTACGTTAGGGAAGGAATGCTAACTGGTCATTCACGTGTGACTTGGCAGGTATGAGGGAAGATAAAG-AGGACGCAAATA-TTGCTCATGCAAGTATAAAGAAATCAGATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223580615 170 - 227556264 AAATGCCTAAAAGCAAATCGTGAGCCT-------AAGAAAAGATCTGAACCACCTCAGCTCTGGAATACTACATTAGGGAAGGAATGCTAACTGGTCATTCACGTGTGACTTGGCAGGTATGAGGGAAGATAAAG-AGGACGCAAATA-TTGCTCATGCAAGTATAAAGAAATCAGATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16631685 171 - 220367699 AAATGCCTAAAAGCAAATCGTGAGCCT-------AAGAAAAGATCTGAACCACCTCAGCTCTGGAATACTACATTAGGGAACGAATGCTAACTGGTCATTCACGTGTGACTTGGCAGGTATGAGGGAAGATAAAGAAGGACGCAAATA-TTGCTCATGCAAGTATAAAGAAATCAGATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82430602 171 + 85787240 AAATGCCTAAAAGCAAATCGTGAGCCT-------AAGAAAAGATCTGAACCACCTCAGCTCTGGAATACTACATTAGGGGAGGAATGCTAACTGGTCATTCGCGTGTGACTTGGCAGGTATGAGGGAAGATAAAGAAGGACGCAAATA-TTGCTCATGCAAGTATAAAGAAATCAGATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14111686 165 - 49578535 aaatGCCTGAAAGCAAATCATGAGCCT-------GAGAAAAGATCTG-GCCACCCCAGCCGTGGAATAGCACATGACAGAAGCAGTGCTGACTGATCACTCATGTGTGGCTTGGCAGGTGTGAGGGAAGTTAAGGAAGGATG-----G-TGACTCAGGTGAGTATAAAGCAACCAGATG i calJac3.chr19 I 451 C 0 s mm10.chr1 178708453 166 + 195471971 AAATGCCCTGAAGTGAACCCTAAGCCT-------AAGAAATGACCTGACCCAGCTGAGTT-TAGGACCCTACATTCTGAGAAGAATGTTATCTGAGCACCCAGGAGT-ACTGGTGAGGGATAAGGGATGGAGAGG-AGGGTG-ATATT-TGTCTTATGTATGTG-GAAGGAGTCTGACA i mm10.chr1 C 0 C 0 s canFam3.chr7 36288823 136 + 80974532 AGATGCCTGCAAATAAACAGTTTTATTTATTGGAAATAAAGGACCAGAACCAGCTCA----------------------------TGTTG-------------GTGTCACTCGACATGAATGAAGCAAGATAAGGGAGGATG-GCGTT-TTACTTGAGCAAGTATACAGAAATCAGATG i canFam3.chr7 C 0 I 260 a score=1073041.000000 s hg38.chr1_KI270759v1_alt 104390 362 + 425601 ACGTTTAACCAAAGAGTTGGGTTTGTGTGGGGGCTTTCCCCTGCCCATCTCCTCCCTCTTCTCCGAGCTTAGCTCCTCTC---TGAGTTTCCTTCCCATCCCAGTTC----------TTCCTCCTGTAGGCCTGGGGCATAGGCAAAGTGGGA----------------------TCTTGTCACTGAGGCCACCCTGCAGAACACACCTCGTGACA----TCTATAGAGGCATATCAG--TCACTGGAAGACAGAAACCCTGGGTTCTTGGCCCTCTTCTCTTGACTCGGGCCTCACCGTTGATGGTCCTTATGACCACACTCTCTAAA-ATGGCACAGCAGGTAGGTAGCCACGTGGAACAAGTTGAGAACAAGTAACACTCTGGTGTTGTGGGATtctctct s panTro4.chr1 224854048 362 + 228333871 ACGTTTAACCAAAGAGTTGGGTTTGTGTGGGGGCTTTCCCCTGCCCATCTCCTCCCTCTTCTCCGAGCTTGGCTCCTCTC---TGAGTTTCCTTCCCATCCCAGCTC----------TTCCTCCTGTAGGCCTGGGGCATAGGCAAAGTGGGA----------------------TCTTGTCACTGCGGCCACCCCGCAGAACACACCTCGTGACA----TGTATAGAGGCATATCAG--TCACCGGAAGACAGAAACCCTGGGTTCTTGGCCCTCTTCTCTTGACTCGGGCCTCACCGTTGATGGTCCTTATGACCACACTCTCTAAA-ATGGCACAGCAGGTAGGTAGCCACGTGGAACAAGTTGAGAACAAGTAACTCTCTGGTGTTGTGGGATTCTCTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226211527 362 - 229942017 ACGTTTAACCAAAGAGTTGGGTTGGTGTGGGGGCTTTCCCCTGTCCATCTCCTCGCTCTTCTCTGAGCTTGGCTCCTCTG---TGAGTTTCCTTCCCATCCCAGCTT----------TTCCTCCTGCAGGCCTGGGGTGTAGGCACAGTGGGG----------------------TCTTGTCACTGAGGCCACCCCGCAGAACACACCTCGTGACA----TGTATAGAGGCATATCAG--TCACTGGAAGACAGAAACCCTGGGTTCTTGGCCCTCTTCTCTTGACTCGGGCCTCACCGTTGATGGTCCGTATGACCACACTCTCTAAA-ATGGCACAGCAGGTAGGTAGCCACGTGGAACAAGTTAAGAACAAGTAACTCTCTGGTGTTGTGGGATtctctct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140102776 362 - 143122389 ATGTTTAACCAAAGAGTTGGGTTTGTGTGCAGGCTTTCCCCTACCCATCTCCTCCCTCTTCTCTGAGCTTGGCCCCTCTC---TGAGTTTCCTTCTCATCCCAGCTC----------TTCCTCCTGTAGGCCTGGGGTATAGGCAAAGTGGGG----------------------TCTTGTCACTGAGGCCACCCCGCAGAACACACTTCGTGACA----TGTATAGAGGCATATCAG--TCACTGGGAGACAGAAACCCTGGGTTCTTGGCCCTCTTCTCTTGACGTGGGCCTCACCGTTGATGGTCCTTATGACCACACTCTCTAAT-ATGGCACAGCAGGTATGTAGCCACGTGGAACAAGTTAAGGGCAAGTAACTCTCTGGTGTTGTGAGATTCTCTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16820417 363 - 229590362 ATGTTTAACCAGAGAGTTGGGTTTGTGTGGGGGCTTTCCCCTGCCCATCTCCTGCCTCTTCACTGAGCTTGGCTCCCCTCT--TGAGTTTCCTTCCCATCTCAGCTC----------TTCCTCCCGCAGGCCTGGGGCATAGGCAAAGTGAGG----------------------TCTTGTCACTGAGGCCACCCTGCAGAACACACCTCGTAACA----TGTAGAGAGGCATGTCAG--TCACTGGAAGACAGAAACCCTGGGTTCTTGGCCCTCTTCTCTTGACTCGGGCCTCACCATTGACGGTCCTTATGACCACACTCTCTAAA-ATGGCACAGCAGGTGTGTAGCCACGTGGAACAAGTTAAGAGCAAGTAACTCTCTGGTGTTGTGGGAttctctct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223580785 363 - 227556264 ATGTTTAACCAGAGAGTTGGGTTTGTGTGGGGGCTTTCCCCTGCCCATCTCCTGCCTCTTCACTGAGCTTGGCTCCCCTCT--TGAGTTTCCTTCCCATCTCAGCTC----------TTCCTCCCGCAGGCCTGGGGCATAGGCAAAGTGAGG----------------------TCTTGTCACTGAGGCCACCCTGCAGAACACACCTCGTAACA----TGTAGAGAGGCATGTCAG--TCACTGGAAGACAGAAACCCTGGGTTCTTGGCCCTCTTCTCTTGACTCGGGCCTCACCATTGACGGTCCTTATGACCACCCTCTCTAAA-ATGGCACAGCAGGTGTGTAGCCACGTGGAACAAGTTAAGAGCAAGTAACTCTCTGGTGTTGTGGGAttctctct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16631856 348 - 220367699 ATGTTTACCCAGAGAGTTGGGTTTGTGTGGGGGCTTTCCCCTGCCCATCTCCTGCCTCTTCACCGAGCTTGGCTCCCCTCT--TGAGTTTCCTTCCCATCTCAGCTC----------TTCCTCCTGCAGGCCTGGGGCATAGGCAAAGTGAGG----------------------TCCTGTCACTGAGGCCACCCTGCAGAACACACCTCGTGACA----Tgtagaga-----------------ggaagacagaaaccCTGGGTTCTTGGCCCTCTTCTCTTGACTGGGGCCTCACCATTGATGGTCCTTATGACCACACTCTCTAAA-ATGGCACAGCAGGTTTGTAGCCACGTGGAACAAGTTAAGAGCAAGTAACTCTCTGGTGTTGtgggattctctct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82430773 363 + 85787240 ATGTTTAACCAGAGAGTTGGGTTTGTGTGGGGGCTTTCCCCTGCCCATCTCTTCCCTCTTCACCGAGCTTGGCTCCCCTCT--TGAGTTTCCTTCCCATCTCAGCTC----------TTCCTCCTGCAGGCCTGGGGCATAGGCAAAGTGAGG----------------------TCTTGTCACTGAGGCCACCCTGCAGAACACACCTCGTGACA----TGTAGAGAGGCATATCAG--TCACTGGAAGACGGAAACCCTGGGTTCTTGGCCCTCTTCTCTTGACTCGGGCCTCACCATTGATGGTCCTTATGACCACACTCTCTAAA-ATGGCACAGCAGGTGTGTAGCCACGTGGAACAAGTTAAGAGCAAGTAACTCTCTGGTGTTGTGGGATTCTCTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14111851 339 - 49578535 ACGTTTAACCAAAGAGCTGGGTTTTCGCGGGG--CTTTCCCTGCCCATCTCCTCCCCCTTCTC--------------------TGAGTTTCTTTCCCATCCCAGTTC----------TTCATCCTGCAGGCCTCGGGCATAAGCAAAGTGGGG----------------------TCTTGTCACTGAGGCCACCCTGCAAAACGCACCTCGTGACG----TGTATAGAGGCCTGTCCA--TCACCGGAAGACAGAAACCCTGGATTCCTGCTCCTCTTCTCTTGACTCTGGCCTGAACATTGATGGGCCTTATGACCGTACTCTCCAAA-ATGGCAAAACAGGAGTGTAGCCAC-CAGAATAGGTTAAGAG-GAGTAA--CTCTGGCAGTGTGGGATtctctct i calJac3.chr19 C 0 C 0 s mm10.chr1 178708619 377 + 195471971 AT-TTTAATGAGACAGCTAAGTT---GAGAGGCCTTT------------TCCACCCTGAGCCCTCAGCCTGATTCCCTTCCCACCTATTTCCCCCCACTAAGGGCTCAGACTGGACATAACTCCTGCAGGCTTTAGGCATGAGCTAGAAGGGGGTGGGGGGAGAGAATCGTGTTACTTTTTCAATCTCACCATCCTATAAAACA-------TGACATGGTTGTGCAGAGACACATCAGATTCACTGGAGGGCAGAACCCCTGTGTTCTTGGCTACCTTCT-TTGACTCTGGTC-CACACATGGTAGCCCATATGACCATCTTCATTGAATGAGAGAGAGCAAG-GCGTGGTCCC-TGGGGGAGGTCAAAAGGAATGGACTGTTTGGCTTTATGGGATGtttttt i mm10.chr1 C 0 I 270 e canFam3.chr7 36288959 260 + 80974532 I a score=1707718.000000 s hg38.chr1_KI270759v1_alt 104752 624 + 425601 ctctctct-----------------------ct-----------TAttttttgagacagggtctcgctctgtcacccaagctggagtgcagtggcacaatcatagctcactgtagcccccaaccacccaagctcaagagatcctcccacctcagcctcccgagtagctggaattacaggcgcgtgccaccatgcctgcctaatttttgtatttttggtagagacagggtttcaccatgttacccagcctggtcttgaactcctgagctcaagcaatctgtctgcctcggccccccaa--------------aggcttgagccaccccacctggccTTCTTT---------CtttttttattgtggtaaaatatatataacctaaaatttaccatcttcaccatttttaagcatgcagttctgtgacattaagtatattcacattgttacacaaccatcaccaccatctaccaccaaaagaactttttcatcttcccaaactgtaactctgcccccgttaacaataactctatgaatttgactattttaggtacttcagataggtggaatcatacaatatttgctcttctgtATTATTTTTAAATAAAAACTCTTTTGATGAGATAGGTCAG----------------------------------------------------------AGAAAATCCATTTTATTGCCCTAGTTTTTAGTACATTTTATTCAAACAAG s panTro4.chr1 224854410 622 + 228333871 CTCTCTCT------------------------------------TAttttttgagacagggtctcgctctgtcacccaagctggagtgcagtggcacaatcatagctcactgtagcccccaaccaccctagctcaagagatcctcctacctcagcctcccgagtagctggaattacaggcgcgtgccaccatgcctgcctaatttttgtatttttggtagagacagggtttcaccatgttacccagcctggtcttgaactcctgagctcaagcaatctgtctgccttggccccccaa--------------aggcttgagccaccccacctggccTTCTTT---------CtttttttattgtggtaaaatatatataacctaaaatttaccatcttcaccatttttaagcatgcagttctgtgacattaagtatattcacattgttacgcaaccatcaccaccatccaccaccaaaagaactttttcatcttcccaaactgaaactctgcccccgttaacaataactctatgaatttgactattttaggtacttcagataggtggaatcatacagtatttgctcttctgtATTATTTTTAAATAAAAACTCTTTTGATGAGATAGGTCAG----------------------------------------------------------AGAAAATCCATTTTATTGCCCTAGTTTTTAGTACATTTTATTCAAACAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226211889 654 - 229942017 ctctctctctctctctctccctctctcctctct-----------TAttttttgaggcagggtctcgctctgtcacccaagctggagtgcagtggcacagtcatagctcactgtag--cccaacctccctggctcaagagatcctcccacctcagcctcccgagtagctggaattacaggcgcgtgccaccatgcccgcctaatttttgtatttttggtagagacagggtttcaccatgtcacccagcctggtcttgaactcctgagctcaagcaatctgtctgccttggcctcccaaagtgctgggactacaggcttgagccaccccatctggccTTCTTT---------CTGTTT---ttgtggtaaaatatatataacctaaaatttaccatcttcaccatttttaagcatgcgg-tctgtgacattaagtatattcacattgttatgcaaccatcaccaccttccaccaccaaaagaactttctcatcttcccaaactgaaactctgcccccattaacaataactctatgaatttgactatttca-gtacttcagataggtggaatcatacaatatttgttcttctgtATTATTTTTAAATAAAAACTCTTTTGATGAGATAGGTCGG----------------------------------------------------------AGAAAATCCATTTTATTGCCCTAATTTTTAGTACATTTTATTCAAATAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140103138 618 - 143122389 CTCTCTCT------------------------------------TAttttttgagacagggtctcgctctgtcacccaagctggagtgcagtggcacaatcatagctcactgtag--cccaacctccctggctcaagagatcctcccacctcagcctcccaagtagctggaattacaggcgcgtgccaccatgcccgcctaatttttgtaattttggtagagacagggtttcaccgtgttacccagcctggtcttgaactcctgagctcaagcaatctgtctgccttggcctcccaa--------------aggcttgagccaccccacctggccTTCTTT---------CtttttttattgtggtaaaatatatataacctaaaatttaccatcttcaccatttttaagcatgcagttctgtgacattaagtatattcacattgttatgcaaccatcaccaccatccaccaccaaaagaactttttcatcttcccaaactgaaactctgcccccattaacaataactctatgaatttgactatttcaggtacttcagataggtggaatcatacaatatttgctcttctgtATTATTTTTAAATAAAAA--CTTTTGATGAGATAGGTCAG----------------------------------------------------------AGAAAATCCATTTTATTGCCCTAGTTTTTAGTATATTTTATTCAAACAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16820780 603 - 229590362 ctctctct-------------------ttctct-----------tattttttgagacagggtttcgctctgtcacccaagctggagtgtagtggcacaatcatagctcactgtag--cccaacctgcctggctcaagagatcctcccacctcagcctcccgcgtagctggaattacaggtgtgcgccaccatgcccggcgactttttgtatttttggtagagacaggg----------------------------------cgagctcaagcgatctgtctgccttggcctcccaaagtgctaggactacaggcttgagccacccctcctggc---cTTT---------CCttttttattgtggtaaaatatatataacctaaaatttaccatcttcaccatttttaagcctgtagttctgtgacattgagtatattcacatggttatgcaaccatcagcaccatccaccaccaaaagaactttctcatcttcccaaaccaaaactcggcctatgttaacaataactctatgaacttgactatttcaggtacttcagataagtggaatcatacaatatttgctcttctgtATTATTTTTAAATAAAAACTCTTTGGATGAGATAGCTCAG----------------------------------------------------------GGAAAATCCATTTTATTGCCCTAGTTTTTAGTACATTTTATTCAAGCAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223581148 603 - 227556264 ctctctct-------------------ttctct-----------tattttttgagacagggtttcgctctgtcacccaagctggagtgtagtggcacaatcatagctcactgtag--cccaacctccctggctcaagagatcctcccacctcagcctcctgagtagctggaattacaggtgtgcgccaccatgcccggcgaatttttgtatttttggtagagacaggg----------------------------------tgagctcaagcgatctgtctgccttggcctcccaaagtgctaggactacaggcttgagccaccccacctggc---cTTT---------CCttttttattgtggtaaaatatatataacctaaaatttaccatcttcaccatttttaagcctgtagttctgtgacattgagtatattcacatggttatgcaaccatcagcaccatccaccaccaaaagaactttctcatcttcccaaaccaaaactcggcctatgttaacaataactctatgaacttgactatttcaggtacttcagataagtggaatcatacaatatttgctcttctgtATTATTTTTAAATAAAAACTCTTTGGATGAGATAGCTCAG----------------------------------------------------------GGAAAATCCATTTTATTGCCCTAGTTTTTAGTACATTTTATTCAAGCAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16632204 603 - 220367699 ctctctct-------------------ttctct-----------tattttttgagacagggtttcgctctgtcacccaagctggagtgtagtggcacaatcatagctcactgtag--cccaacctccctggctcaagagatcctcccacctcagcctcccgagtagctggaattacaggtgtgcgccaccatgcccggcgaatttttgtatttttggtagagacaggg----------------------------------tgagctcaagcgatctgtctgccttggcctcccaaagtgctaggactacaggcttgagccaccccacctggc---cttt---------ccttttttattgtggtaaaatatatataacctaaaatttaccatcttcacCATTTTTAAGCCTGTAGTTCTGTGACATTGAGTATATTCACATGGTTATGCAACCATCAGCACCATCCACCaccaaaagaactttctcatcttcccaaaccAAAACTCGGCCTATGTTAACAATAACTCTATGAACTTGACTATTTCAGGTACTTCagataagtggaatcatacaatatttgctcttctgtattatttttaaataaaaactctttGGATGAGATAGCTCAG----------------------------------------------------------GGAAAATCCATTTTATTGCCCTAGTTTTTAGTACATTTTATTCAAGCACG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82431136 603 + 85787240 CTCTCTCt-------------------ttctct-----------tattttttgagacagggttttgctctgtcacccaagctggagtgtagtggcacaatcatagctcactgtag--cccaacctccctggctcaagagatcctctcacctcagcctcccgaggagctggaattataggtgtgtgccaccatgcccggcgaatttttgtatttttggtagagacaggg----------------------------------tgagctcaagcgatctgtctgccttggcctcccaaagtgctgggactacaggcttgagccaccccacctggc---cTTT---------CCttttttattgtggtaaaatatatataacctaaaatttgccatcttcaccatttttaagcctgcagttctgtgacattgagtatattcacatggttatgcaaccatcagcaccatccaccaccgaaagaactttctcatcttcccaaaccaaaactcaacctccattaacaagaactctatgaacttgactatttcaggtacttcagataagtggaatcatacaatatttgctcttctgtATTATTTTTAAATAAAAACTCTTTGGATGAGATAGCTCGG----------------------------------------------------------GGAAAATCCATTTTATTGCCCTAGTTTTTAGTACATTTTATTCAAGCAAG i chlSab2.chr25 C 0 I 235 s calJac3.chr19 14112190 714 - 49578535 ctctctct-------------------ctctctctctctctctctAttttttgagacagggtcttgctgtgtcacaccagctggagtgcagtggcacaatcatggctcactgcag--ctcaacctcccaggctcaagagatcctcccacctcagcctcccaagtagct-gaattacaggtgcgtgccaccctgcccagctcatgtttgtatttttggtagagacagggtttcaccatgttgcccaggctggtcttgaactcgtgagctcaagcaatctgtctgccttggcctcccaaagtgctggaactacaggcttga-ctaccccacctggccTTCTTTTTTTCTTTCttttttttattgtggcaaaatgtatatgacctaaaatttagcatcttaaccatttttaagcttgcagttctgtgacaataagtatattcacgtttttatgcaa-tgtcaccaccatccaccaccaatagaactttttcatcttcccaccctgaaactcc-tccccgttaacaatgactctatgaatttgacgatttcaggtgcttcagataagtggaatcaaacaatatttgttcttctgtATTATTTTAAAATAAAAACCATTTTGGTGAGATAGGTTGGGGGAAATCCATTTTGGTGAGATAGGTTGGGGGAAATCCATTTTGGTGAGATAGGTTGAGGGAAATCCATTTTGTTGCTCTAGTTTTCAGTATATTTTATTCAAGCAAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178708996 270 + 195471971 I e canFam3.chr7 36288959 260 + 80974532 I a score=1831211.000000 s hg38.chr1_KI270759v1_alt 105376 630 + 425601 AACCCAGCAATAGTTAACTTGCTGCAATGTCTACTGAGACGTCTAAACCAAAACATGTCTTGCTGATGCCAGCTTTTGCCCTCTTCACAAATCCTGCTTAGGAAAGGTTCATGACACTGCCACAGTAGGCCTGACCCTGCCAGGGAAAGGCATCACCGCGGTTCTGGGTAGCTCTGGTGTGCGCGAAGAAAAGAGACAAGCAGGGTGAGAGTGAAGTCTAAATGGATCAACAAGTTTGCCTGATACCTTGGAGTCAGGAAGCACGGGAAG-AAAGAGTTGAGTGGAATAGCTTAGTGAGGTCTGAGGCCTGCCTGATCCAGAGGAGACACTGACAAACACAGACGCTGCAGAAGAGGAAGCCGTCCCAGGTTAGGAGGCATCCCAGTGCTTCCCTCCTCAGTGAGTCATTTCATCTGTTTCTCTGCCTGCAAGGAAGAAATAAACATAACTCATAAAATGAAGCATTTCACCTCGC-CGGGGGAGTGGCATTGAAGTGAGAGGCATGCATCTGTGGGTGTCAGAGCAAGAGTCCTCTGTAGCTGCTTGTCCTTGACCTGGAAGGAAGGGTCTGGTGGGGTGACAAAGTGACATCTGCTCCTTAGAGGGAGCCTGTTCTTGGAGACCCCTCTG s panTro4.chr1 224855032 629 + 228333871 AACCCAGCAATAGTTAACTTGCTGCAATGTCTACTGAGACGTCTAAACCAAAACATGTCTTGCTGATGCCAGCTTTTGCCCTCTTCACAAATCCTGCTTAGGAAAGGTTCATGACACTGCCACAGTAGGCCTGACCCTGCCAGGGAAAGGCATCACCGCGGTTCTGGGTAGCTCTGGTGTGCGCGAAGAAAAGAGACAAGCAGGGTGAGAGTGAAGTCTAAATGGATCAACAAGTTTGC-TGATACCTTGGAGTCAGGAAGCACGGGAAG-AAAGAGTTGAGTGGAACAGCTTAGTGAGGTCTGAGGCCTGCCTGATCCAGAGGAGACACTGACAAACACAGACGCTGCAGAAGAGGAAGCCGTCCCGGGTTAGGAGGCATCGCAGTGCTTCCCTCCTCAGTGAGTCATTTCATCTGTTTCTCTGCCTGCAAGGAAGAAATAAACATAACTCATAAAATGAAGCATTTCACCTCGC-GGGGGGAGTGGCATTGAAGCGAGAGGCATGCATCTGTGGGTGTCAGAGCAAGAGTCCTCTGTAGCTGCTTGTCCTTGACCTGGAAGGAAGGGTCTGGTGGGGTGACAAAGTGACATCTGCTCCTTAGAGGGAGCCTGTTCTTGGAGACCCCTCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226212543 629 - 229942017 AACCCAGCAATAGTTAACTTGCTGCAATGTCTACTGAGACGTCTAAACCAAAACATGTCTTGCTGATGCCAGCTTTTACCCTCTTCACAAATTCTGCTCAGGAAAGGTTCATGACACTGCCACAGCAGGCCTGACCCTGCCTGGGAAAGGCATCACCGCGGTTCTGGGTAGCTCTGGTGTGTGCGAAGAAAAGAGACAAGCAGGGTGAGAGTGAAGTCTAAATGGGTCAACAAATTTGCCTGATACCCTGGGGTCAGGAAGCACGGGAAG-AAAGAGTTGAGTGGAATAGCTTAGTGAGGGCTGAGGCCTGCCTGATCCAGAGGAGACACTGACCAACACAGACGCTGCAGAAGAGGAAGCTGTCCCGGGTTAGGAGGCATCCCAGTGCTTCCCTCCTCGGTGGGTCATTTCATCTGTTTCTCTGCCTGCAAGGACGAAATAAACATAACTCATAAAATGAAGCATTTCACCTC-C-CGGGGGAGTGGCATTGAAGCGAGAGGCGTGCGTCTGTGGTTGTCAGAGCAAGAGTCCTCTGTAGCTGCTTGTCCTTGACCTGGAAGGAAGAGTCTGTTGGGGTGACAAGGTGACATCTGCTTCTTAGAGGGAGCCTGTTCTTGGAGACCCCTCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140103756 631 - 143122389 AACCCAGCAATAGTTAACTTGCTGCAATGTCTACTGAGATGTCTAAACCAAAACATGTCTTGCTGATGCCAGCTTTTGCCCTCTTCACAAATTCTGCTTAGGAAAGGTTCATGACACTGCCACAGCAGGCCTGACCCTGCCTGGGAGAGGCATCACCGCAGTTCTGGGTAGCTCTGGTGTGCGGGAAGAAAAGAGACAAGCAGGGTGAGAGTGAAGTCTAAATGGATCAACGAGTTTGCCTGATACCTTGGGGTCAGGAAGCACGGGAAG-AAAGAGTTGAGTGGAATAGCTCAGTGAGAACTGAGGCCTGCCTGATCCAGAGGAGACACTGACAAACACAGACGCTGCAGAAGAGGAAGCCGTCCCGGGTTAGGAGGCATCCCAGTTCTTCCCTCCTCGCTGGGTCATTTCATCTGTTTCTCTGCCTGCAAGGAAGAAATAAACATAACTCATAAAATGAAGCATTTCACCTCCCGGGGGGGAGTGGCATTGAAGCGAGAGGCATGCATCCATGGTTGTCAGAGCAAGAGTCCTCTGTAGCTGCTTGTCCTCGACCTGGAAGGAAGGGTCTGGTGGGGTGACAAAGTGACATCTGCTCCTTAGGGGGAGCCTGTTCTTGGAGACCCCTCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16821383 624 - 229590362 AACCCAGCAATAGTTAACCTGCTGCAGTGTCTACTGAGACTTCTAAACCAAAACGTGTCTTGCTGATGCCAGCTTTTGCCCTCATCACAAATTCTCCTTAGGAAAGTTTCATGACA-TGCCACCGCAGGCCTGACCCTGCCTGGGAAAGGCATCACCGCAGTTCTGCGTAGCCCCGGTGTGCGGGAAGG--AAAGACAT---GGGTGAGAGTGAAGTCTAAATGGATCAACAGGTTTGCCTGATACCTCGGGGTCAGGAAGCACGGTAAG-AAAGAGTTGAGTGGAATCGCTTAGTGAGGACTGAGACCTGCCTGATCCAGAGGAGACACCGACAGACACATACACTGCAGAAGAGGACGCCGTCCCCAGTTAGGAGGCATCCCAGTGCTTCCCTCCTCAGTGGGTCATTTCATCTGTTTCTCTGCCTGCAAGGATGAAATAAACATAACTCATAAAACGGAGCATTTCACTTCCC-TGGGGGAGTGGCATTGAAGCGAGAGGCAGGTATCTGTGGTTGGCACAGCAAGAATCCTCTGTAGCTGCTTGCCCTTGGCCTGGAAGGAAGGGTCTGGTGGGGTGACGAGGTGACATCTGCTCCTTAGCGGGAGCTTGTTCTTGGAGACCCCTCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223581751 624 - 227556264 AACCCAGCAATAGTTAACCTGCTGCAGTGTCTACTGAGACTTCTAAACCAAAACGTGTCTTGCTGATGCCAGCTTTTGCCCTCATCACAAATTCTGCTTAGGAAAGGTTCATGACA-TGCCACCGCAGGCCTGACCCTGCCTGGGAAAGGCATCACCGCAGTTCTGGGTAGCCCCGGTGTGCGGGAAGG--AGAGACAT---GGGTGAGAGTGAAGTCTAAATGGATCGACAGGTTTGCCTGATACCTCGGGGTCAGGAAGCACGGTAAG-AAAGAGTTGAGTGGAATCGCTTAGTGAGGACTGAGGCCTGCCTGATCCAGAGGAGACACCGACAGACACATACACTGCAGAAGAGGACGCCGTCCCGAGTTAGGAGGCATCCCAGTGCTTCCCTCCTCAGTGGGTCATTTCATCTGTTTCTCTGCCTGCAAGGATGAAATAAACATAACTCATAAAACGGAGCATTTCACTTCCC-TGGGGGAGTGGCATTGAAGCGAGAGGCAGGTATCTGTGGTTGGCACAGCAAGAATCCTCTGTAGCTGCTTGCCCTTGGCCTGGAAGGAAGGGTCTGGTGGGGTGACAAGGTGACATCTGCTCCTTAGCGGGAGCCTGTTCTTGGAGACCCCTCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16632807 625 - 220367699 AACCCAGCAATAGTTAACCTGCTGCAGTGTCTACTGAGACTTCTAAACCAAAACGTGTCTTGCTGATGCCAGCTTTTGCCCTCATCACAAATTCTGCTTAGGAAAGGTTCATGACA-TGCCACCGCAGGCCTGACCCTGCCTGGGAAAGGCATCACCGCAGTTCTGGGTAGCCCTGGTGTGCGGGAAGGAAAGAGACAT---GGGTGAGAGTGAAGTCTAAATGGATCAACAGGTTTGCCTGATACCTCGGGGTCAGGAAGCACGGTAAG--AAGAGTTGAGTGGAATAGCTTAGTGAGGACTGAGGCCTGCCTGATCCAGAGGAGACACCGACAGACACATACACTGCAGAAGAGGACGCCGTCCCGGGTTAGGAGGCATCCCAGTGCTTCCCTCCTCAGTGGGTCATTTCATCTGTTTCTCTGCCTGCAAGGATGAAATAAACATATCTCATAAAATGGAGCGTTTCACTTCCC-AGGGGGAGTGGCATTGAAGCGAGAGGCATGCATCTGTGGTTGTCAGAGCAAGAATCCCCTGTGGCTGCTTGCCCTTGGCCTGGAAGGAAGGGTCTGGTGGGGTGACAAGGTGACATCTGCTCCTTAGCGGGAGCCTGTTCTTGGAGACCCCTCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82431974 629 + 85787240 AACCCAGCAATAGTTAACCTGCTGCAGTGTCTACTGAGACTTCTAAACCAAAACGTGTGTTGCTGATGCCAGCTTTTGCCCTCATCACAAATTCTGCTTAGGAAAGATTCGTGACA-TGCCACAGCAGGCCTGACCCTGCCTGGGAAAGGCATCACCGCAGTTCTGGGTAGCCCTGGTGTGCGGGAAGGAAAGAGACGTGCAGGGTGAGAGTGAAGTCTAAATGGATCAACAGGTTTGCCTGATACCTCGGGGTCAGGAAGCACGGTAAG-AAAGAGTTGAGTGGAATAGCTTAGTGAGGACTGAGGCCTGCCTGATCCAGAGGAGACACCGACAGTCACATACGCTGCAGAAGAGGACACCGTCTCCGGTCAGGAGGCATCCCAGTGCTTCCCTCCTCAGTGGGTCATTTCATCTGTTTCTCTGCCTGCAAGGATGAAATAAACATAACTCATAAAACGGAGCGTTTCACTTCCC-AGGGGGAGTGGCATTGAAGCGAGAGGCATGCATCTGTGGTTGTCAGAGCAAGAATCCTCTGTGGCTGTTTGCCCTTGGCCTGGAAGGAAGGGTCTGGTGGGGTGACAAGGTGACATCTGCTCCTTAGCGGGAGCCTGTTCTTGGAGACCCCTCTG i chlSab2.chr25 I 235 C 0 s calJac3.chr19 14112904 620 - 49578535 AACCCATCGATAGTTAACTTTCTGCAGTGTCTACTGAGACTTCTAAACAAAAACATGTCTTGCTGATGCCAGCTTTTGCCCTCATCACAAATTCTGCTCAGGAAACATTC-TAACACGGCCACAGCAAGCATGA-----CCTGGGAAAGGCAGCACTGCAGTTCTGGGTAGCTCTGGTGTGCAGGAAGAGAAGAGACAAGCAGGGCGAGAATGAAGTCTAAACGGATCCACAAGTTTGCTTGATA-CTTGGGGTCAGGAGGCACGGGAAGAAAAGAGGCGAGTGGAATGGCTTAGTGAGGACCGAGG-CTGTGGGACGCA---GAGACGCAGACAGACACGGGCACTGCAGAAGAGGAGGCCGTCCCGGGTTAGGAAGCATCCCGGTGCTTCCCTCCTAAGTGGGTCATTTCTTCTGTTTTTCTGCATGCAAGCATGAAATAAACATAACTCATAAAACAAAGCATTTCATTCCCC-AGGGGGAGTGGCGTTGAAGCCAGAGACATGCACCTGTGGTTGTCAGAGCAGGAGTCCTCTGTAGCTGCTTGTCCTTGGCCAGGAAGGAAGGGTCTGGTGGGGTGACAAAGTGACATCTGCTCCTTAAGGGGAGCCTGTCCTTGGAGACCCCTCTG i calJac3.chr19 C 0 I 308 e mm10.chr1 178708996 270 + 195471971 I e canFam3.chr7 36288959 260 + 80974532 I a score=303411.000000 s hg38.chr1_KI270759v1_alt 106006 123 + 425601 CCAGATACATTTTTATAGTCAGCTCCAGAAGTGACTTGATGTGGGGATTGAGACATATTCCTGCAGT-----CAAAGACTCATACATAG-AAAGGGACATAA---TTTTTTTTTCTTTCTCTCTCTTATGAG s panTro4.chr1 224855661 123 + 228333871 CCAGATACATTTTTATAGTCAGCTCCAGAAGTGACTTGATGTGGGGATTGAGACATATTCCTGCAGT-----CAAAGACTCATACATAG-AAAGGGACATAA---TTTTTTTTTCTTTCTCTCTCTTGTGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226213172 128 - 229942017 CCAGATACATTTTTATAGTCAGCTCCAGAAGTGACTTGACGTGGGGACTGAGACATATTCCTGCAGTCAAAGCAAAGACTTGTACATAG-AAAGGGACATAA---TGGTTTTTCCTTTCTCTCTCTTATGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140104387 128 - 143122389 CCAGATACATTTTTATAGTCAGCTCCAGAAGTGACTTGATGTGGGGATTCAGACATATTCCCGCAGTCGAAGCAAAGTCTCCTACATAG-AAAGGGACATAA---TTATTTTTTCTTTCTCTCTCTTATGAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16822007 118 - 229590362 CCAGACACATTTTTATAGTCAGCTCCAGAAGTGACTTGATGTGGGGA-----------TCCTGCAGTCAAAGCAAAGACTCGTGCATAG-AAAGGGACACCA--TTTTTTTTCTCTCTGTCTCTGCTATGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223582375 118 - 227556264 CCAGACACATTTTTATAGTCAGCTCCAGAAGTGACTTGATGTGGGGA-----------TCCTGCAGTCAAAGCAAAGACTCGTGCATAG-AAAGGGACACCA--TTTTTTTTCTCTCTGTCTCTGCTATGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16633432 120 - 220367699 CCAGATACATTTTTATAGTCAGCTCCAGAAGTGACTTGATGTGGGGA-----------TCCTGCAGTCAAAGCAAAGACTCGTGCATAG-AAAgggacatcattttttttttctctctgtctctgctatGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82432603 117 + 85787240 CCAGATACATTTTTATAGTCAGCTCCAGAAGTGACTTGATGTGGGGA-----------TCCTGCAGTCAAAGCAAAGACTCGTACATAG-AAAGGGGCATCA---TTTATTTCTCTGTCTCTCTGCTATGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14113832 125 - 49578535 cCAGATACGTTTTTATAGTCAGCTCCAGAAGTGACCTGATGTGGGGGTTGAGACATTTTCCT---GTCAAAGCAAAGACTCATAGATAGAAAAGGGACGTAA----TTTTCTCTCTCTCTCTCTGTTATGAG i calJac3.chr19 I 308 C 0 e mm10.chr1 178708996 270 + 195471971 I e canFam3.chr7 36288959 260 + 80974532 I a score=832576.000000 s hg38.chr1_KI270759v1_alt 106129 309 + 425601 CAAAGACTGAATAAGGCTTATGTGG------ACTCTATCACTGCATCGTGATGACTGGAGTAAGGTGCC-CTCCGTCCATCATCGTCAGCTTTCTATTCT---GTGTCTGACTGCAGTGGAACATCGGCGTGATCAACTCTACattatttaactttgatccgggcgtgcattgtttgatcttttcctttgcagattgactttcataatttatatt---ttatagaatacacagaaatgtattctggc-----atattcta-------agagcataacggctgacagcATAGACACATCCTAAGACAATACTAAGGGTTTACAAATTAGCTGTGG s panTro4.chr1 224855784 309 + 228333871 CAAAGACTGAATAAGGCTTATGTGG------ACTCTATCACTGCATCGTGATGACTGGAGTAAGGTGTC-CTCCGTCCATCATTGTCAGCTTTCTATTCT---GTGTCTGACTGCAGTGGAACATCGGCGTGATCAACTCTACATTATTTAACTTTGATCCGGGCGTGCATTGTTTGATCTTTTCCTTTGCAGATTGACTTTCATCATTTATATT---TTATAGAATACACAGAAATGTATTCTGGC-----ATATTCTA-------AGAGCATAACGACTGACAGCATAGACACATCCTAAGACAATACTAAGGGTTTACAAATTAGCTGTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226213300 308 - 229942017 CAAAAACTGAGTAAGGCGTATGT-G------ACTCTGTCACTGCATCGTGATGACCGGAGTAAGATGCG-CTCTTTCTGTCATTGTCAGCTGTCTATTCT---GTGTCTGACTGCAGTGGAACATTGGCGTGATCAACTCTACATTATTTAACTTTGATCTGGGCGTGCATTGTTTGATCTTTTCCTTTGCAGATGGACTTTCATAATTTGTATT---TTATAGAATATACAGAAGTGTATTCTGGC-----ATATTCTA-------AGAGCATAACGACTGACAGCATAGACACATCCTAAGACAATACTAAGGGTTTACAAATTAGCTGTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140104515 309 - 143122389 CAAAGACTGAATAAGGCTTGTGTGG------ACTCTATCACTGCATCGTGATGACTGGAGTACGGTGCC-CTCTGTCTATCATTGTCAGCTTTCTATTCT---GTGTCTGACTGCAGTGGAACATCGGCGTGATCGGTTCTACGTTATTTAACTTTGATCTGGGCGTGCATTGTTTGATCTTTTCCTTTGCAGATGGACTTTCATAATTTTTATT---TTACAGAATATCCAGAAGTGTATTCTGGC-----ATATTCTA-------AGAGCATAACGACTGACAGCATAGACACATCCTAAGACAATACTAAGGGTTTACAAATCAGCTGTGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16822125 307 - 229590362 CAAAAGCTGAATAAGGCTTATGTGG------A--CTCTCACTACATCACGATGACTGGAGTAAGGTGCC-CGCTGTCTGTCGTCGTCAGCTTTCTATTTT---GCGTCTCACTGCAGTGGAACCTCGGCGTGATCAACTCTACattattgaactttgatctgggtgtgccttgtttgatctcttcctttaaagattgactttcataatttatgtt---ttatagaatatacagaagtctattctggc-----atattcta-------agagcataacaactgacagcATAGACACATCCTAAGACAATACTAAGGGTTTACAAATTAGCTGTGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223582493 307 - 227556264 CAAAAGCTGAATAAGGCTTATGTGG------A--CTCTCACTACATCACGATGACTGGAGTAAGGTGCC-CGCTGTCTGTCGTCGTCAGCTTTCTATTTT---GTGTCTCACTGCAGTGGAACCTCGGCGTGATCAACTCTACattattgaactttgatctgggtgtgccttgtttgatctcttcctttaaagattgactttcataatttatgtt---ttatagaatatacagaagtctattctggc-----atattcta-------agagcataacaactgacagcATAGACACATCCTAAGACAATACTAAGGGTTTACAAATTAGCTGTGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16633552 309 - 220367699 CAAAAGCTGAATAAGGCTTATGTGG------ACTCTCTCACTACATCACGATGACTGGAGTAAGGTGCC-CGCTGTCTGTCATCGTCAGCTTTCTATTCT---GTGTCTGACTGCAGTGGAACCTCGGCGTGATCAACTCTACATTATTGAACTTTGATCTGGGTGTGCATTGTTTGATCTCTTCCTTTAAAGATTGactttcataatttatatt---ttatagaatataCAGAAGTATATTCTGGC-----ATATTCTA-------AGAGCATAACAACTGACAGCATAGACACATCCTAAGACAATACTAAGGGTTTACAAATTAGCTGTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82432720 309 + 85787240 CAAAAACTGAATAAGGCTTATGTGG------ACTGTATCACTACATCACGATGACTGGAGTAAGGTGCC-CGCTGTCTATCATCATCAGCTTTCTATTCT---GTGTCTGACTGCAGTGGAACCTCGGCGTGAGCAACTCTACATTATTGAACTTTGATCTGGGTGTGCATTGTTTGATCTCTTCCTTTAAAGATTGACTTTCATAATTTATATT---TTATAGAATATACAGAAGTATATTCTGGC-----ATATTCTA-------AGAGCATAACAAGTGACAGCATAGACACATCCTAAGACAATACTAAGGGTTTACAAAGTAGCTGTGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14113957 274 - 49578535 CAAAAACGGAATAAGATTTATGTGG------ACCGTGTCACTGCGTGGTGGTTGCTGGAGTGAGGTGCC-ACCTGCC-----------------------------TCTGACT--------------GCGTGGTCAGCTCTACGCTGTTCCTCTTTGGTCTGGGCGTGCACGGCTTGATCTTTCCCTTTGCAGACTGACTGTCATAATACATATT---TTACAGAATATACTCAAGTGTATTCTGGCGTTCTATTTCCTA-------AGAGCATAGCAACGGACAGCATAGACACACCCTAAGCTAATACCAAGGGTTTAAAAATGAGCTGTGG i calJac3.chr19 C 0 I 306 s mm10.chr1 178709266 309 + 195471971 CACAGACTGTGGAAGGCTTAGATGACCATGCATGCTACCACAGTACC-TAACTCCTGGAGGTAGATGCCTTTCTGACCCCCATGGTCAGCTGTCTGCTGTCCAGAGCCTACCCG----GGAGTCTATCCAT-ATCTGTTCAGTGTTGCTCATCTTTGGGTTAAGGCTGC--TGTTTGATCTGCTCAATGGCAAGTTCATTCCCCTACTCTAGACTCCATTATAGCTTGTTTA-------ATCCCAGC-----TACTTCTAGTGGTTGAAACCCTGAGCAGTAACCACACAGGAATGTCC--AGGCCATACCA---GTGTGCAAATGAGCTGTAA i mm10.chr1 I 270 C 0 e canFam3.chr7 36288959 260 + 80974532 I a score=25057.000000 s hg38.chr1_KI270759v1_alt 106438 8 + 425601 ATGGTCTT s panTro4.chr1 224856093 8 + 228333871 ATGGTCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226213608 8 - 229942017 ATGGTCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140104824 8 - 143122389 ATGATCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16822432 8 - 229590362 ATGGTCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223582800 8 - 227556264 ATGGTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16633861 8 - 220367699 ATGGTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82433029 8 + 85787240 ATGGTCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14114537 8 - 49578535 ATGGTCTT i calJac3.chr19 I 306 C 0 s mm10.chr1 178709575 8 + 195471971 CCCATCTG i mm10.chr1 C 0 C 0 e canFam3.chr7 36288959 260 + 80974532 I a score=2059495.000000 s hg38.chr1_KI270759v1_alt 106446 607 + 425601 TTCCAAGATAATTGTGAGTTGATTTGTGCTAACCTGGATCAGAAATATTTATCAAGC-ACTCACTGTTTACAAAACTATAAAAGCATTAAGTAACAGTGTAAGTAGCAGATAGCAAT--AAAAGA---TGTCCCAAGGCAGTGAGATATTAATTGTGTAAGAG-AAAATGTTATTAAATGTTATTTTCTGGGATTTGAGGAGGGGG-AGCCTGTCATTAAATGTCATTAATTAAAGACTGAGTAGGAAGCAATTGCTCTCCGTAGATGTCTCTACACAGGAAACGGATACTGTTTGGTGTTCCCTGCTGTCTTGGCAGAGTCAGAGGGAGG----------------TAGCTTTCTGGGTCAATAATGCCGTTTAAGATGAACGCCCATGCTGACACACTCTGGTAGCTCTCAGAGTCCTTCCT-TCAGTGTAGAAGTTAAAGGTCAGCAGCTTACAGATTGCAATTTGCATTGTGGAAGCAACCTTAG----GAAGAGCCACACGTCTTTTATCTTGATTCTGTGGTCAAGATGGTAACCACATTTGGGATTCTCTCTTTCTTTGGGATTCTCTCTTTCTTT-GGGAATGAGTACCAAGCTCCTCATAC---TGAG--GTATCAGTGTAGACATTTAAATG s panTro4.chr1 224856101 607 + 228333871 TTCCAAGATAATTGTGAGTTGATTTGTGCTAACCTGGATCAAAAATATTTATCAAGC-ACTCACTGTTTACAAAACTATAAAAGCATTAAGTAACAATGTAAGTAGCAGATAGCAAT--AAAAGA---TGTCCCAAGGCAGTGAGATATTAATTGTGTAAGAG-AAAATGTTATTAAATGTTATTTTCTGGGATTTGAGGAGGGGG-AGCCTGTCATTAAATGTCGTTAATTAAAGACTGAGTAGGAAGCAATTGCTCTCCGTAGATGTCTCTACACAGGAAACGGATACTGTTTGGTGTTCCCTGCTGTCTTGGCAGAGTCAGAGGGAGG----------------TAGCTTTCTGGGTCAATAATGCCGTTTAAAATGAACGCCCATGCTGACACACTCTGGTAGCTCTCAGAGTCCTTCCT-TCAGTGTAGAAGTTAAAGGTCAGCAGCTTACAGATTGCAATTTGCATTGTGGAAGCAACCTTAG----GAAGAGCCACACGTCTTTTATCTTGATTCTGTGGTCAAGATGGTAACCACATTTGGGATTCTCTCTTTCTTTGGGATTCTCTCTTTCTTT-GGGAATGAGTACCAAGCTCCTCATAC---TGAG--GTATCAGTGTAGACATTTAAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226213616 589 - 229942017 TTCCAAGATAATCGTGAGTTGATTTGTGCTAACCTGGATCAAAAATATTTATCAAGC-ACTCACTGTTTACAAAACTATAAAAGCATTAAGTAACAGTGTAAGTAGCAGATAGCAAT--AAAAGA---TGTCCCAAGGCAGTGAGATATTAATTGTGTAAGAG-AAAATGTTATTAAATGTTATTTTCTGGGATTTGAGGAGGGGG-AGCCTGTCATTAAATGTCGTTAATTAAAGACTGAGTAGGAAGCAATTGCTCTCCGTAGATGTCTCTACACAGGAAACGGATACTGTTTGGTGTTCCCTGCTGTCTTGGAAGAGTCAGAGGGAGG----------------TGGCTTTCTGGGTCAATAATGCCGTTTAAGATGAATGCCCATGCTGACACACTCTGGTAGCTCTCAGAGTCCTTCCT-TCAGTGTAGAAGTTAAAGGTCAGCAACTTACAGATTGCAATATGCATTGTGGAAGCAACCTTAG----GAAGAGCCACACGTCTTTTATCTTGATTCTGTGGTCAAGATGGTAACCGCA------------------TTTGGGATTCTCTCTTTCTTT-GGGAATGAGTACCAAGCTCCTCATAG---TAAG--GTATCAGTGTAGACATTTAAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140104832 589 - 143122389 TTCCAGGATAATCGTGAGTTGATTTGTGCTAACCTGGATCAAAAATATTTATCAAGC-ACTCACTGTTTACAAAACTGTAAGAGCATTAAGTAACAGTGTAAGAAGCAGATAGCAAT--AAAAGA---TGTCCCAAGGCAGTGAGATATTAATTGTGTCAGAG-CAAATGTTATTAAATGTTATTTTCTGGGATTTGAGGAGGGGG-AGCCTGTCATTAAATGTCGTTAATTAAAGACTGAGTAGGAAGCAATTGCTCTCCGTAGATGTCTCTACACAGGAAACAGATACTGTTTGGTGTTCCCTGCTGTCTTGGCAGAGTCAGAGGGAGG----------------TGGCTTTCTGGGTCAATAATGCCGTTTAAGATGAATGCCCATGCTGACACACTCTGGTAGCTCTCAGAGTCCTTCCT-TCAGTGTAGAATTTAAAGGTCAGCAGCTTACAGATTGCAATTTGCATTGTGGAAGCAACCTTAG----GAAGAGCCACACGTCTTTTATCTTGATTCTGTGGTCAAGATGGTAACCACA------------------TTTGGGATTCTCTCTTTCTTT-GGGAATGAGTACCAAGCTCCTTATAG---TGAG--GTATCAGTGTAGACATTTAAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16822440 589 - 229590362 TTCCAAGATAATCGTGAGTTGATTTGTCCTTACCTGGATCAAAAATTTTTATGAAGC-ACCCACTGTTTACAAAACTATAAAAGCATTAGGTAACAGTGTAGGTAGCAGATAGCAAT--AAAAGA---TGTCCCAAGGCAGTGAGATATTAATTGTGTAAGAG-AAAATGTTATTAAATGTTATTTTCTGGGATTTGAGGAGGGGG-AGGATGTCATTAAGTGTCATTAATTAAAGACTGAGTAGGAAGCAATTGCTCTCCGTAGATATCTCTACACAGGAAACAGATACTGTTTGGTGTTCCCTGCTGCCTTGGCCGAGTCAGAGGGAGG----------------TGGCTTTCTGGCTCAGTAATGCCGTTGAGGACGAATGCCCATGCCGACACACTCCAGTAGCTCTCAGAGTCCTTCCT-TCAGTATGGAAGCTAAAGGTCAGCGGCTTCCAGACTGCCATTTGTGATGTGGAGGCAGCCTTAG----GAAGAACCACACGTCTCTTATCTTGATTCTGTGGTCAACATCGTACCCACA------------------TTTGGGATTCTCTCCCTCTTT-GGGGATGAGGACCAAGCTCCTCATAC---TGAG--GTGTCAGTGTAGACATTTAAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223582808 589 - 227556264 TTCCAAGATAATCGTGAGTTGATTTGTCCTTACCTGGATCAAAAATTTTTATGAAGC-ACCCACTGTTTACAAAACTATAAAAGCATTAGGTAACAGTGTAGGTAGCAGATAGCAAT--AAAAGA---TGTCCCAAGGCAGTGAGATATTAATTGTGTAAGAG-AAAATGTTATTAAATGTTATTTTCTGGGATTTGAGGAGGGGG-AGGATGTCATTAAGTGTCATTAATTAAAGACTGAGTAGGAAGCAATTGCTCTCCGTAGATGTCTCTACACAGGAAACAGATACTGTTTGGTGTTCCCTGCTGCCTTGGCCGAGTCAGAGGGAGG----------------TGGCTTTCTGGCTCAGTAATGCCGTTGAGGACGAATGCCCATGCCGACACACTCCAGTAGCTCTCAGAGTCCTTCCT-TCAGTATGGAAGCTAAAGGTCAGCGGCTTCCAGACTGCCATTTGTGATGTGGAGGCAGCCTTAG----GAAGAACCACACGTCTCTTATCTTGATTCTGTGGTCAAGATCGTAACCACA------------------TTTGGGATTCTCTCCCTCTTT-GGGGATGAGGACCAAGCTCCTCATAC---TGAG--GTGTCAGTGTAGACATTTAAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16633869 589 - 220367699 TTCCAAGATAATCGTGAGTTGATTTGTCCTTACCTGGATCAAAAATTTTTATGAAGC-ACCTACTGtttacaaaactataaaagcaTTAGGTAACAGTGTAGGTAGCAGATAGCAAT--AAAAGA---TGTCCCAAGGCAGTGAGATATTAATTGTGtaagag-aaaatgttattaaatgttattttctggGATTTGAGGAGGGGG-AGCATGTCATTAAGTGTCATTAATTAAAGACTGAGTAGGAAGCAATTGCTCTCCGTAGATGTCTCTACACAGGAAACAGATACTGTTTGGTGTTCCCTGCTGTCTTGGCCGAGTCAGAGGGAGG----------------TGGCTTTCTGGCTCAGTAATGCCGTTGAGGACGAATGCCCACGCCGACACACTCCGGTAGCTCTCAGAGTCCTTCCT-TCAGTATAGAAGCTAAAGGTCAGCGGCTTACAGACTGCCATTTGTGATGTGGAGGCAGCCTCAG----GAAGAACCACACGTCTCTTGTCTTGATTCTGTGGTCAAGATCGTAACCACA------------------TTtgggattctctctctcttt-ggggATGAGGACCAAGCTCCTCATAC---TGAG--GTGTCAGTGTAGACATTTAAATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82433037 589 + 85787240 TTCCAAGATAATCGTGAGTTGATTTGTCCTTACCTGGATCAAAAATTTTTATGAAGC-ACCCACTGTTTATAAAACTATAAAAGCATTAGGTAACAGTGTAGGTAGCAGATAGCAAT--AAAAGA---TGTCCCAAGGCAGTGAGATATTAATTGTGTAAGAG-AAAATGTTATTAAATGTTATTTTCTGGGATTTGAGTAGGGGG-AGCATGTCATTAAGTGTCATTAATTAAAGACTGAGTAGGAAGCAATTGCTGTCCGTAGATGTCTCTACACAGGAAACAGATACTGTTTGGTGTTCCCTGCTGTCTTGGCAGAGTCAGAGGGAGG----------------TGGCTTTCTGGCTCAGTAATGCCGTTGAGGACGAATGCCCACGCCGACACACTCCGGTAGCTCTCAGAGTCCTTCCT-TCAGTATAGAAGCTAAAGGTCAGCGGCTTACAGACTGCAATTTGCGATGTGGAGGCAGCCTTAG----GAAGAACCACACGTCTTTTATCTTGATTCTGTGGTCAAGATCGTAACCACA------------------TTTGGGATTCTGTCTCTCTTT-GGGGATGAGGACCAAGCTCCTCATAC---TGAG--GTATCAGTGTAGACATTTAAATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14114545 579 - 49578535 TTCCAAGATAATTGTGAGTTGATTTGTGCTAACCTGGATCAAAAATATTTATCGAGC-TCCCACTGTTTAT-AAGCCATTAAAGCATTAATTAACAGTAGAGGTAGCAGGTATCAAT--AAAAGG---TGTCCCAAGGCAGTGAGATATTAATTGTGTAAGAGAAAAATGTTCTTAAATGTTATTTTCTGGGATTTGAAGAGGGAC-ATTGTGTCGTTAAGAGTCATCAACTAAAGGCTGAGGGAGTAGCAGTTGCTCTCTGTGGATGTCTC--CACAGGAAACAGATACCGTTTGGTG-TCCCTGCTGTCTTGGCACACTCAGAGGGCGG----------------CGGCTTTCTCGGTCAATGATGCCATTCAAGGTGGACGCCCACGCTGACACACGCCGGTCGCTCTCAGAGTTCTTCCC-TCAGTGTGGAAGTTAAAGGTCGGTGGCTTACAGATTGCAATTTGCGACGTGGGAGCA-CCTTAG----GAAGAGCCACGTGTCTTTTGTCTTGATTCTGTGGTCA-----GTAATCCCA------------------TTTGGGATTCACTCTTTCTTT-GGGAGTGGATA-CGAGCTCCTCATAC---TGAG--GGATCTGTGTACAAATTTAAATG i calJac3.chr19 C 0 I 160 s mm10.chr1 178709583 535 + 195471971 CATCGAGACGGATGTGAGCTGATTTGTGCTAACTCTGATCAAGAGTATGTATTGAGCAACTCTATGTATTGACAACTATAA---------------------GTAACAAATAGCAAC--AAAAGGCACTGTTGCAAAATAGCCAGGTACTGAT----TAAGAG-AAAGTGTTATTAGATGCTATTTTCTGGGGCTTGGGAGGGGGCTATCATGTCGTTAAATGTAGTTAACCGAAGACTGAATAGGAAGAAATTGATGCCTGAA----CCTCCACATACAGAATAGATGTTGTTTGGAACTCCCTGATGTCTTGAC---GTCAGGGTCAAGACTTCTGGGTCATTCTTGACATTCTGGGTGAAGAATGCTATCTAAGATAAAC-TCCATGCGGATGCCCACTGATATCTCT--GAGCAATTCTT-TCAGGGGGAAAAGTTAAGGCCAGTAGCTTACAGA-----------------------------------------------TCCTTTGTTCTGATTGTGTGCTCAAGAACATAAGCCAG------------------TTTAAGAGGCTGGATGTCTTTGGGGGACACGTACTAGGTACCTTGTGC---TGAGACATATCAGTATCAAAATTCCAGTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36289219 570 + 80974532 TTTCCAGACAATTGT-AGTTGATTTCCACTAACGTGAATCAAAAGTATTTATGGAGC-ACCCACTGTTTGCAAAACTATAAAAACCTTAAGTGAGAGTGTGAGCAATACATAATTACTAAAGAGA---TGTCCCTCAACAGTGAACTGTCAATTGCCTAAGAG-AAAATACTGTTAGGTGTTATTTTCTGGGATCT------GGGG-GTCATAATATTA---------AAATAAGGGCAGAGTAAGATGCGCTTACTGTCCGTGGATGTCTCTACGCTGGAAATGGATACTG-TTAGCATTCCCTGCTGCGTTGGCGGAGTCAGAGG-AGG----------------TGGCTCTCTGGGTCA---------TTTAAGATGAACCCCCATGCTGTCACACTGTGGGTGCTCTC--AGCCATTCTTGTTGGTAGGGAAGTCGAAGGTCAATGGCTCACAGATTGCAGTTTGCTCTGTGGAACCAACCTTGGTTTATGAGAGCCCAACATCTTTTGTCTTGATTCTGTGGTCAAGATCATAACCACA------------------TTTAAGATTTGCTTTTTCTTA-GGGGACAAGTGTAGAGTTCCTCCTACAATTTTT--GTGCTGATACAAAAATTTACCTG i canFam3.chr7 I 260 C 0 a score=1102457.000000 s hg38.chr1_KI270759v1_alt 107053 337 + 425601 TGGTTGAAAGACGTGAAT-----TAA-----AAGTTAAAATAGAAGGAGAAGCTTTATTTCGATGTGGCCTGTGAAAAGCAGACTTTCACTGCTCGTTAATGGTGCACGGAATTCT------------------------CATGGACGTTGA-------------------------GAATGT---CACATGTACACGCACATGCA------------------------------------------------CACGTGTCGACACCTGCGCAGACACAC------ATGTGCACCCTCTCCCTGCAGCCTG---------------G---------CCCCTTTTGCTGCCACC-T---GTATTCATTTTCCCACCA---------CCCCGAGGGATATGATGTGCTGTTTGGAAAGTAACAGATATCCTTA----AG---------GAGTGAAATGGTCCCCTGTAATCAAGATGGAGAGCTAAAAACAGGTTTCAATCAGA s panTro4.chr1 224856708 337 + 228333871 TGGTTGAAAGACGTGAAT-----TAA-----AAGTTAAAATAGAAGGAGAAGCTTTATTTCGAAGTGGCCTGTGAAAAGCAGACTTTCACTGCTCGTTAATGGTGCATGGAATTCT------------------------CATGGACGTTGA-------------------------GAATGT---CACATGTACACGCACGTGCA------------------------------------------------CACGTGTCGACACCTGCGCAGACACAC------ATGTGCACCCTCTCCCTGCAGCCTG---------------G---------CCCCTTTTGCTGCCACC-T---GTATTCATTTTCCCACCA---------CCCCGAGGGATATGATGTGCTGTTTGGAAAGTAACAGGTATCCTTA----AG---------GAGGGAAATGGTCCCCTGTAATCAAGATGGAGAGCTAAAAACAGGTTTCAGTCAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226214205 337 - 229942017 TGGTTGAAAGACGTGAAT-----TGG-----AAGTTAAAATAGAAGGAGAAGCTTTATTTCGATGTGGTCTGTGAAAAGCAGACTTTCACTGCTCATTAATGGTACATGGAATTCT------------------------CATGGACATTGA-------------------------GAATGT---CACAAGTACACGCACATGCA------------------------------------------------CACGTGTCGACACCTGCACAAACACAC------ATGTGCACCCTCTCCCTGCAGCCTG---------------G---------CCCCTTTTGCTGCCACC-C---GTATTCATTTTACCACCA---------CCTCGAGGGATATGATGTGCTGTTTGGAAAGTAACAGATATCCTTA----AG---------GAGTGAAATGGTCCCCTGTAATCAAGACAGAGAGCTAAAAACAAGTTTCAATCAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140105421 336 - 143122389 TGGTTGAAAGATGTGAAT-----TAA-----AAGTTAAAATAGAAGGAGAAGCTTTATTTCGATGTGGTCTGTGAAAAGCAGACTTTCACTGCTCATTAATGGTacatggaattct------------------------catggacattga-------------------------gaatgt---cacatgtacacgcacatgca------------------------------------------------cacgtgtc-acacctgcacaaacacaC------ATGTGCACCCTCTCGCTGCAGCCTG---------------G---------CCCCTTTTGCTGCCACC-C---ATATTCATTTTACCACCA---------CCCCGAGGGATATGATGTGCTGTTTGGAAAGTAACAGATATCCTTA----AG---------GAGTGAAAGGGTCCCCTGTAATCAAGACGGAGAGCTAAAAACAGGTTTCAGTCAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16823029 337 - 229590362 TGGTTGAAAGACGTGTAT-----TAA-----AAGTTAAAATAGAGGGAGAAGCTTTCTTTCCATGTGATCTGTGACAAGCAGACTTTCACTGCTCATTAATGGTGCATGGAGTTCT------------------------CATGGACATTGA-------------------------GAATGT---CACATGCACACGCACGTGCA------------------------------------------------CACGTGTTAACACCTGTGCAAACACAC------ATGTGTACCCTGTCTCTGCAGCCTA---------------G---------TCCCTTTTGCTGCCACC-C---GTATTCATTTTACCACCA---------CCCCGAGGGATATGATGTGCTGTTTGGAAAGTAACAGATACTCTTA----AG---------GAGTGAAATGGTCCCCTGTAATCAAGACGGAGAGCTAAAAACAGGTTTCAATCAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223583397 337 - 227556264 TGGTTGAAAGACGTGTAT-----TAA-----AAGTTAAAATAGAGGGAGAAGCTTTCTTTCGATGTGATCTGTGACAAGCAGACTTTCACTGCTCATTAATGGTGCATGGAGTTCT------------------------catggacattga-------------------------gaatgt---cacatgcacacgcacgtgca------------------------------------------------caCGTGTTAACACCTGTGCAAACACAC------ATGTGTACCCTGTCTCTGCAGCCTA---------------G---------TCCCTTTTGCTGCCACC-C---GTATTCATTTTACCACCA---------CCCCGAGGGATATGATGTGCTGTTTGGAAAGTAACAGATACTCTTA----AG---------GAGTGAAATGGTCCCCTGTAATCAAGACGGAGAGCTAAAAACAGGTTTCAATCAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16634458 337 - 220367699 TGGTTGAAAGACgtgaat-----taa-----aagttaaaatagagGGAGAAGCTTTCTTTCGATGTGATCTGTGACAAGCAGACTTTCACTGCTCATTAATGGTGCATGGAGTTCT------------------------CATGCACATTGA-------------------------GAATGt---cacatgcacacgcacatgca------------------------------------------------cacgtgtTAACACCTGTGCAAACACAC------ATGTGTACCCTGTCCCTGCAGCCTG---------------G---------TCCCTTTTGCTGCCACC-C---GTATTCATTTTACCACCA---------CCCCGAGGGATATGATGTGCTGTTTGGAAAGTAACAGATACCCTTA----AG---------GAGTGAAATGGTCCCCTGTAATCAAGACGGAGAGCTAAAAACAGCTTTCAATCAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82433626 337 + 85787240 TGGTTGAAAGACGTGAAT-----TAA-----AAGTTAAAATAGAGGGAGAAGCTTTCTTTCGATGTGATCTGTGACAAGCAGACTTTCACTGCTCATTAATGGTGCATGGAGTTCT------------------------catggacattga-------------------------gaatgt---cacatgcacacgcacgtgca------------------------------------------------caCGTGTTAACACCTGTGCAAACACAC------ATGTGTACCCTGTCCCTGCAGCCTG---------------G---------TCCCTTTTGCTGCCACC-C---GTATTCATTTTACCACCA---------CCCCGAGGGATATGATGTGCTGTTTGGAAAGTAACAGATACCCTTA----AG---------GAGTGAAATGGTCCCCTGTAATCAAGACGGAGAGCTAAAAACAGGTTTCAATCAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14115284 330 - 49578535 TGGTTGAAAGACGTGAAT-----TAA-----AAGTTAAACCATACGGAGAAGCTTTATTTCCATGTGGTCTGTGAAAAGCACACTTTCGCTGCTCATTAGTGGTGCTTGGGGTTCT------------------------CATGTACATTGA-------------------------AAACCT---CCCATGTACCTGCACGTGCA------------------------------------------------CACGTGTTGACACCTGCG----CACAC------ACGTGCACACTTTCCCTGCAGCCTA--------------------------CTCTTTTGCTGCTACC-C---GTTTTCATTTTACCACCA---------CCT-GAGGGATATGATGTGCTGTTTGGAAAGTCACAGGTACCCTGA----AG---------GAGTGACATGGTCCCCTGTAACCAAGACAGAGAGCTGAAAACAGGTTTCAGTCAGA i calJac3.chr19 I 160 C 0 s mm10.chr1 178710118 463 + 195471971 TGATTTAAAGACATGTGC-----CTATGCCTAGGTCAACATAGAGGGGAACAAT--------GTGTGGCCTGTGCAAAGC--ATCCTCACAGGACAGTCATGGCACATGGATTCTTACCTTTAGGAGGACCTGacacacacacacacacagacacacacacacacacacacacacacgagtgcgcacacacacacacgcacatgcacgcacacacactcacacacacacacacactcatgcatacacacacactcacacgcacacacacacgcacacacacTCGGTTACATGCATCCTCTCCTCATATTCCTCAGTCGtttctctctc---------tctctctctctgtcact-ctgtgtctcacttctaccaccctctccttctcccCGTGGAAAATG--GTGGTGTTTGAAAAGTAGAAAACTCTATTA----AG---------CAGTGACATGGTCCCATGTAACTGAGCTGGAGAGCTAAATGTGGGTTTTAATCAGA i mm10.chr1 C 0 C 0 s canFam3.chr7 36289789 341 + 80974532 TGGCCGAAACACATGGATCTTGCCTA-----AGATTAAAACATAGAGAGGAGCTTTC--TCCATGAGAAATGAGAAGAGCA-TCAGCCTGTGCCCAGGAATGACACCTGGGACACT------------------------CATACA-ATTAA-------------------------GGACCC---CATGGGTGCAGGCATACACA--------------------------------------------------------------TGTGCAAGTGCAT------ACGTGCACCCTCTCCCTGCCACCTT---------------GCCACCTGGTTCCTTTTTTTTGCCACCTC---CTGTTTATTTTACCACCA---------CGT-GCAGGATGTGATGTGGTGTTTTGAAAGAAACAGATACTGTTACTTTAGTGGTTACTTTGGTGAAATGCCCCCATGTGTCTGAGATG--GAGCTGAA---AGGTCTTAatcaga i canFam3.chr7 C 0 I 271 a score=1631830.000000 s hg38.chr1_KI270759v1_alt 107390 580 + 425601 ACTAAACCAAATAAAATCCCGTGGTGAAAATTTAGTTCCCCTTAAAGCTTGTGATTAGGAC--CACCCCGTGTGTTTTCGGCCACTGCTTTTAGACGGTGACAGTGACACATACACGTAACGAAGATAATGAGGCCTTTCCACTAGCACTGTAGGGTTTTCAAACATGTTAGATGGATATTTGGAG--------------GTTTTCTCAGGAAGAATCATGTATCTTTCACAGTATCGCAAGAGAAGAAATAAATTCCT----AAGAGTCT--AACACGCAGATGTAAGCCATAGTCCTTTAAAAATAAGGCTCTTggccaggtgcggtggctcacgcc-tgtaatcctagcactttgggaggctgaggtggatggatcacaaggtcaggagtttgagaccagcctagtcaatatggtgaaaccctgtctctact-aaaaaaatagaaaaattagctgggcatggtggcgtccacctgtaatcccagctactcaggaggctgaggcgggagaatcgcttgaacccggaaggcggaggttgcagtgagcc-gagattgcaccactgcactccagcctgggtgacagaacaagactccatctcaaaa s panTro4.chr1 224857045 580 + 228333871 ACTAAACCAAATAAAATCCCGCGGTGAAAATTTAGTTCCCCCTAAAGCTTGTGATTAGGAC--CACTCAGCGTGTTTTCAGCCACTGCTTTTAGACGGTGACAGTGACACATACACGTGACCAAGATAATGAGGCCTTTCCACCACCACTGTAGGGTTTTCAAACATGTTAGATGGATATTTGGAG--------------GTTTTCTCAGGAAGAATCATGTATCTTTCACAGTATCGCAGGAGAAGAAATAAATTCCT----AAGAGTCT--AACATGCAGATGTAGGCCATAGTCCTTTAAAAATAAGGCTCTTggccaggtgcggtggctcacgcc-tgtaatcctagcactttgggaggccgaggtggatggatcacaaggtcaggagtttgagaccagcctagtcaatatggtgaaaccctgtctctact-aaaaaaatagaaaaattagctgggcatggtggcgtccgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcggaggtggcagtgagcc-gagattgcaccactgcactccagcctgggtgacagaacaagactccatctcaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226214542 580 - 229942017 ACTAAACCAAATAAAATCCCGTGGTGAAAATTTAG-TCCCCCTAAAGCTTGTGATTAGGAG--CACTCAGCGTGTTTTCAGCCACTGCTTTTAGACGATGACAGTGACACATACACGTAACCAAGATAATGAGGCCTTTCCACCAGCACTGTAGGGTTTTCAAACGTGTTAGATGGATATTTGGAG--------------GTTTTCTCAGGAAGAATCATGTATCTTTCACAGTATCGCAAGAGAAGAAATAAATTCCT----AAGAGTCT--AACACGCAGATGTAAGCCATAGTCCTTTAAAAATAAGACTCTTggccaggtgcggtggctcacgcc-tgtaatcccagcactttgggaggccgaggtggatggatcacaaggtcaggagtttgagaccatcctggtcaatatggtgaaaacccgtctctactaaaaaaaatagaaaaattagctgggcctggtggcatccgcctgtaattccagctactcaggaggctgaggcgggagaatcgcttgaacccgggaggcggaggttacagtgagcc-aagattgcaccactgcactccagcctgggtgacagatccagactccatctcaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140105757 577 - 143122389 ACTAAACCAAATAAAATCCTGTGGTGAAGATTCAG-TCCCCCTAAAGCTTGTGATTAGGAC--CACTCAGCGTGTTTTCAGCCACTGCTTTTAGACGATGACAGTGACACATAAACGTAACCAAGATAATGAGGCCTTTCCACCAGCACTGTAGGGTTTTCAAACGTGTTAGATGGATATTTGGAG--------------GTTTTCTCAGGAAGAATCATGTATCTTTCACAGTATCGCAAAAGAAGAAATAAATTCCT----AAGAGTCC--AACATGCAGATGTAAGCC--AGTCCTTTAAAAATAAGGCTCTTggctgggcgcggtggctcacgcc-tgtaatcccagcactttgggaggccgaggtggatggatcacaaggtcaggagtttgagaccagcctggtcgatatggtgaaaccctgtctctact-aaaaacgtagaaaaattagtggggtgtggtggcgtccgcctgtaatcccagctactcaggaggctgaggcgggagaattgcttgaacccgggaggcagaggttgcagtgagcc-gagattgcaccactgcactccagcctgggtgacacagcgagactccatctcaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16823366 579 - 229590362 ACTAAACCAAGTAAAATCTGCTGGTGAAAATTTAG-TCCCCCTAAAGCTTGTGATTAGGAC--CACTTAGTGTGTTTTCAGCCACTGCTCTTAGACGGTGACAGTGACACATGCATGTAACCAAGATAATGAGGCCTTTCC-CCAGCACTGTAGGGTTTTCTAACGTGTTAGATGGATATTTGGAG--------------GTTTTCTCAGGAAGAATCATGTATCTTTCACAGTATTGCAAGAGAAGAAATAAATTCCT----AAGAGTCT--AACATGCAGATGTAAGCCATAGTCCTTTAAAAATGAGGCTTTTggccgggtacagtggctcatgcc-tgtaatcccggcactttgggaggccgaggtggatggatcacaaggtcaggagtttgagaccagcctggtcaatatggt-aaaccccgtgtctactaaaaaaaacagaaaaattagctgggcatggtggcctccacctgtaatcccagctactcgggaggctgaggcggtagaatcgcttgaacccggaaggcggaagttgcagtgagccaaagattgtgccactgccctccaccctgggcgacagagcaagactccatctcaaaa i rheMac3.chr1 C 0 I 100 s macFas5.chr1 223583734 579 - 227556264 ACTAAACCAAGTAAAATCTGCTGGTGAAAATTTAG-TCCCCCTAAAGCTTGTGATTAGGAC--CACTTAGTGTGTTTTCAGCCACTGCTCTTAGACGGTGACAGTGACACATGCATGTAACCAAGATAATGAGGCCTTTCC-CCAGCACTGTAGGGTTTTCTAACGTGTTAGATGGATATTTGGAG--------------GTTTTCTCAGGAAGAATCATGTATCTTTCACAGTATTGCAAGAGAAGAAATAAATTCCT----AAGAGTCT--AACATGCAGATGTAAGCCATAGTCCTTTAAAAATGAGGCTTTTggccgggtacagtggctcatgcc-tgtaatcccggcactttgggaggccgaggtggatggatcacaaggccaggagtttgagaccagcctggtcaatatggt-aaaccccgtgtctactaaaaaaaacagaaaaattagctgggcatggtggcctccacctgtaatcccagctactcgggaggctgaggcggtagaatcgcttgaacccggaaggcggaagttgcagtgagccaaagattgtgccactgccctccaccctgggcgacagagcaagactccatctcaaaa i macFas5.chr1 C 0 I 101 s papAnu2.chr1 16634795 579 - 220367699 ACTAAACCAAGTAAAATCTGCTGGTGAAAATTTAG-TCCCCCTAAAGCTTGTGATTAGGAC--CACTTAGTGTGTTTTCAGCCACTGCTCTTAGACGGTGACAGTGACACATACACGTAACCAAGATAATGAGGCCTTTCC-CCAGCACTGTAGGGTTTTCTAACGTGTTAGATGGGTATTTGGAG--------------GTTTTCTCAGGAAGAATCATGTATCTTTCACAGTAttgcaagagaagaaataaattcct----aagAGTCT--AACATGCAGATGTAAGCCATAGTCCTTTAAAAATAAGGCttttggccgggtacagtggctcacgcc-tgtaatcccggcactttgggaggccgagttggatggatcacaaggtcaggagtttgagaccagcctggtcaatatggt-aaaccccgtgtctactaaaaaaaacagaaaaattagctgggcatggtggcctccacctgtaatcccagctactcgggaggctgaggcggtagaatcgcttgaacccggaaggcagaagttgcagtgagccaaagattgtgccactgccctccaccctgggcgacagagcaagactccatctcaaaa i papAnu2.chr1 C 0 I 36 s chlSab2.chr25 82433963 579 + 85787240 ACTAAACCAAGTAAAATCTGCTGGTGAAAATTTAG-TCCCCCTAAAGCTTGTGATTAGAAC--CACTTAGTGTGTTTTCAGCCACTGCTCTTAGACGGTGACAGTGACACATACATGTAACCAAGATAATGAGGCCTTTCC-CCAGCACTGTAGGGTTTTCTAACGTGTTAGATGGATATTTGGAG--------------GTTTTCTCAGGAAGAATCATGTATCTTTCACAGTATTGCAAGAGAAGAAATAAATTCCT----AAGAGTCT--AACATGCAGATGTAAGCCATAGTCCTTTAAAAATAAGACTTTTggccgggtacagtggctcacgcc-tgtaatcccggcactttgggaggctgaggtggatggatcacagggtcaggagtttgagaccagcctggtcaatatggtgaaaccccgtgtctact-aaaaaaacagaaaaattagctgggcatggtggcctccacctgtaatcccagctactcgggaggctgaggcggtagaatcgcttgaacccggaaggcggaagttgcagtgagccaaagattgtgccactgccctccaccctgggcgacagagcaagactccatctcagaa i chlSab2.chr25 C 0 I 915 s calJac3.chr19 14115614 595 - 49578535 ACCAAGCCAAATAAAATCCTGTGGTGAAAATGTAG-TCCCCGTCAAGCTTGTGATCAGGACGGCTCTCGGCGTGTTTTCAGCCACAGCTCTTAGACTGCGACGGTGACACACACACATCACCAAGATAATGAGGCCTTTCCACGAGGACTGCAGGGTTTTCAAATGTGCTCAGTGGACCTTTGGAGATTTTGGAACCAGAGTTTTCTCAGGAAGAATCATGTATCTTTCACAGGATCACAAGAGAAGAAATCAATTTCTAACAAACAGTCT--AAAATGCAGATGTAAGCCGTAGTCCTTTAAAAATAAGGCGCTTggccaggcgccgcggctcacgccttgtaatcccagcactttgggaggctgaggctggtggatcacgaggtcaggaggtggagaccatcctggccaacatggtgaaaccccatctctact--aaaataca-aaaaattagccgggcgtggtaccccacacctgtagtcccagctactcaggaggccgaggc---agaattgcttgaacccaggaggtggaggttgcagtgagct-gagatcacgccactgcacgccagcctgggtgacagtgtgacactctgtctcaaaa i calJac3.chr19 C 0 C 0 s mm10.chr1 178710581 348 + 195471971 ACCAACCCAAACATGA-CCCGTGATGAAAAACCGG-TTCCCCT--------------GGAC--------------TTTCAGC--TTACTTTAGGA-----ACTATGGTGC-------------AGACAGTGAAGGTTTTCTACCAG-ATTGCAGG--TTTCGA---TGGGAAACAGCCATTTTGTGGCTTTGGATCTGA-GTTTTCTCAGGAACAATCATGTATTTTCCACACTGTGGTGAGAAAAGAAATACATATGA----GACAGTCTGCAAAATCAAGGTATATGG---AGTCTTTC--AAATCAGGCATCTGGTCCAGCACTGGG--------C-GGTGAT----------------GCTAAGGC--------------ATCAGGATAT---------------------------------TCTTTATG-GATGAAACAG------------------------------------------TACTGTGGGG---------------------GATCTAGGGGGGTAGGG--------------------------------------CTGGGGGGCAGAGC----------------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36290130 271 + 80974532 I a score=1979749.000000 s hg38.chr1_KI270759v1_alt 107970 736 + 425601 ataaataaata---aataacaaaaGTAAGGCTCTTGATTCAGAATTATGCAGTGAGGCTCAAGTTTCAGGAGAACATC----------------TTCTAATAGTGGACTGCAGGGAGGGGCTCTGAGGGCAGCCTCGAGTTAGGAAGTGGTCCTGAAGGGGAGAGTGGAGGGAGGGAGATGGAACTGAGGCCTGACATGCTGCACAGAAGCCACCTCagccgaatggatcagcatcccaaccgtggctcctcctcctactagctgatttcccttggggaaggagctcaacctctctgaccctcagttccctctttggtgaaagggTTGAATTGTCTTGGAATCCA-----CAGGTGACCACCTCAGGACTGCAGTGAGGGATCTGTATGCATCCAGTAAAGCCTGTCCTTAGCTCTGTCTTGTGGCTGCCCACCTGGCCTGGGGGCCAGAGATGGGGC-------------TGGAGAAGGGGCAGGCTTCCTCCGGGAGCTCATCCCCACACCCAGTGGAGTTAGCGTAGCCAAGGCT-TCCAG-CAGAGTTTTACATCCAGAGTCATCTTTGTTATAGGTAGCAGCAAGAAGCA-GTCTCTCCTGGGAAGACTTGCTTTGAAGTGTGGGGAGTCGCACTGACTTGTAGGAAAGGCCACTGCCTTGAGATGAAATTCCAAAGCCAAGAGGAAA------AGTGCTGTTGAGGAGGTGGGATG--------------GGAGGTCAACTCCTCA----AGTCCCTCAAGGAATTCAGTGGAA-GCCACTCCTGAGAACCGGCT s panTro4.chr1 224857625 750 + 228333871 ataaataaata---aataacaaaaGTAAGGCTGTTGATTCAGAATTATGCAGTGAGGCTCAAGTTTCAGGAGAATATC----------------TTCTAATAGTGGGCTGCAGGGAGGGGCTCCGAGGGCAGCCTCGAGTTAGGAAGTGGTCCTGAAGGGGAGAGTGGAGGGAGGGAGATGGAACTGAGGCCTGACATGCTGCACAGAAGCCACCTCagccgaatggatcagcatcccaaccgtggctcctcctcctactagctggtttcccttggggaaggagctcaacctctctgaccctcagttccctctttggtgaaagggTTGAATTGTCTTGGAATCCA-----CAGGTGACTGCCTCAGGACTGCAGTGAGGGATCTGTATGCATCCACTGAAGCCCGTCCTTAGCTCTGTCTTGTGGCTGCCCACCTGGCCTGGGGGCCAGAGATGGGGC-------------TGGAGAAGGGGCAGGCTTCCTTCGGGAGCTCATCCCCACGCCCAGTGGAGTTAGCGTAGCCAAGGCT-TCCGG-CAGAGTTTTACATCCAGAGTCATCTTTGTTATAGGTAGCAGCAAGAAGCA-GTCTGTCCTGGAAAGACTTGCTTTGAAGTGTGGGGAGTCGCACTGACTTGTAGGAAAGGCCACTGCCTTGAGATGAAATTCCAAAGCCAAGAGGAGA------AGTGCTGTTGAGGAGGTGGGATGGGAGGTGGGATGCAGGAGGTCAACTCCTCA----AGTCCCTCAAGGAATTCAGTGGCA-GCCACTCCTGAGAACCGGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226215122 749 - 229942017 ataaataaata---aataacaaaaGTAAGGCTCTTGATTCAGAATTATGTAGTGAGGCTCAAGTTTCAGGAGAACATC----------------CTCTAATAGTGGACTGCAGGGAGGGGCTCTGAGGGCAGCCCCGAGTTAGGAAGTGGTCCTGAAGGGGAGAGTGAAGGGAGGGAGATGGAACCGAGGCCTGACACGCCGCATAGAAGCCACCTCagccgaatggatcagcgtcccaaccatggctcctcctcctactagctgatttcccttggggaaggagctcaacctctctgacccttggttccctctttggtgaaatggTTGAATTATCTTGGAATCCA-----CAGGTGACCGCCTCAGGACTGCAGCGAGGGATCTGTATGCATCCACTAAAGCCCGTCCTTAGCTCTGTCTTGTGGCTGCCCACCTGGCCTGGGGGCCAGAGATGGGGC-------------TGGAGAAGGGGCAGGCTTCCCCCGGGAGCTCATCCCCACTCCCAATGGAGTTAGCGTAGCCAAGGCT-CCTGG-CAGAGTTTTACAT-GAGAGTCATCTTTGTTATAGGTAGCAGCAAGAAGCA-GTCCCTCCTGGAAAGACTTGCTTTGAAGTGTGGGGAGTCCCACTGACTTGTAGGAAAGGCCACTGCCTTGAGATGAAATTCCAAAGCCCAGAGGAGA------AGTGCTGTTGAGGAGGTGGGATGGGAGGTGGGATGCGGGAGGTCAACTTCTCA----AATCCCTCAAGGAATTCAGTGGAA-GGCACTCCTGAGAACCGGCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140106334 745 - 143122389 ataaataaata---aataacaaaaGTAAGGCTCTTGATTCAGAATTATGCAGTGAGACTCAAGTTTCAGGAGAACATC----------------CTCTAAAAGCGGACTGCAGGGAGGGGCTCTGAGGGCAGCCTCGAGTTAGGAAGTGGTCCTGAAGGGGAGAGTGAAGGGAGGGAAATGGAACTGAGGCCTGACACGCTGCATAGAAGCCACCTCagccgaacggatcagcatcccaaccgtggctcctcctcctactagctgatttcccttggggaaggagctcagcctctctgaccctccgttccctctttggtgaaatggTTGAATTGTCTTGGAATCCA-----CAGGTGACTGCCTCAGGACTGCAGTGAGGGATCTGTATGCATCCACT-----CTGTCCTTAGCTCTGTCTTGTGGCTGCCTACCTGGCCTGGGGGCCAGAGATGGGGC-------------TGGAGAAGGGGCAGGCTTCCCCCGGGAGCTCATCCCCACACCCAGTGGAGTTAGCGTAGCCAAGGCT-TCCTG--GCAGTTTTACATCCAGAGTCATCTTCATTATAGGTAGAAGCAAGAAGCAGGTCCCTCCTGGAAAGACTTGCTTTGAAGTGTAGGGAGTCCCACTGAATTGTAGGAAAGGCCACTGCCTTGAGATGAAATTCCAAAGCCAAGAGGAGA------AGTGCTGTGGAGGAGGTGGGGTGGGAGGTGGGATGCGGGAGGTCAACTCCTCA----AATCCCTCAAGGAATTCAGTGGAA-GCCACTCCTGAGAACCGGCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16824045 718 - 229590362 atagataaata---aataACAAAAGTAAGCCTCTTGATTCAGAATTTTGCAGTGAGGCTCAAATTTCAGGAGAACACC----------------CTCTAATAGTGGACTGTAGGGA-GGGCTCTGAGGGCAGTCTCGAGTTAGGAAGTGGTCCTGAAGGAGATAGTGAAGGGAGGGAAACTGAATTGAGGGCTGACACGCCGCGCAGAAGCCACCTCAGctgaacagatcaccattccaaacctggctcctcctcctactagctggtttcccttggggaagaagctcaacctctctgaccctcagttccctctttggtgaaatggTTGAATTGTCTTGGAATCCA-----CAGGTGACAGCCTCAGGACTGCAATGAGGAATCTGTATGCATCCACTAAAGCCCGTCCTTAGCTCTGTCTTGTGGCTGCTCACCTGGCCTGGAGGCCCGAGATGGGGC-------------GGGAGAAGGGGCAGGGTTCCTCCGGGAGCTCATCCCCACGCCCAGTAGAGTTAGCATA-------------------------ACATCCAGAGTGATCTTTATTATAGGTAACAGCAAGAAGCAGGTCCCTCTTGGAAAGACTTGCTGTGAAGTGTGGAGAGTC-CACTGACTAGTAGGAAAGGCCACTGCCTTGAGATGAAATTCCAAAGCCAAAAGGAGA------AGTGCTGTTGAGGAGGTGAGATG------------CGGGAGGTCAACTCCTCAAATCAATCCTTCCAAGAATTCAGGGGAA-GCCACTCCTGAGAACCGACT i rheMac3.chr1 I 100 I 120 s macFas5.chr1 223584414 718 - 227556264 atagatagata---AATAACAAAAGTAAGCCTCTTGATTCAGAATTATGCAGTGAGGCTCAAATTTCAGGAGAACACC----------------CTCTAATAGTGGACTGTAGGGA-GGGCTCTGAGGGCAGTCTCGAGTTAGGAAGTGGTCCTGAAGGAGATAGTGAAGGGAGGGAAACTGAATTGAGGGCTGACACGCCGCGCAGAAGCCACCTCAGctgaacagatcaccattccaaacctggctcctcctcctactagctggtttcccttggggaagaagctcaacctctctgaccctcagttccctctttggtgaaatggTTGAATTGTCTTGGAATCCA-----CAGGTGACAGCCTCAGGACTGCAATGAGGAATCTGTATGCATCCACTAAAGCCCGTCCTTAGCTCTGTCTTGTGGCTGCTCACCTGGCCTGGAGGCCCGAGATGGGGC-------------GGGAGAAGGGGCAGGGTTCCTCCGGGAGCTCATCCCCACGCCCAGTAGAGTTAGCATA-------------------------ACATCCAGAGTGATCTTTATTATAGGTAGCAGCAAGAAGCAGGTCCCTCTTGGAAAGACTTGCTGTGAAGTGTGGAGAGTC-CACTGACTAGTAGGAAAGGCCACTGCCTTGAGATGAAATTCCAAAGCCAAAAGGAGA------AGTGCTGTTGAGGAGGTGAGATG------------CGGGAGGTCAACTCCTCAAATCAATCCTTCCAAGAATTCAGGGGAA-GCCACTCCTGAGAACCGACT i macFas5.chr1 I 101 I 90 s papAnu2.chr1 16635410 745 - 220367699 atagatagatagataataacaAAAGTAAGGCTCTTGATTCAGAATTATGCCGTGAGGCTCAAGTTTCAGGAGAACACC----------------CTCTAATAGTGGACTGTAGGGA-GGGCTCTGAGGGCAGTCTCGAGTTAGGAAGTGGTCCTGAAGGAGATAGTGAAGGGAGGGAAACTGAATTGAGGGCTGACACACCGCGCAGAAGTCACCTCAGCTGAACAGATCACCATTCCAAACCTGGCTCCTCCTCCTACTAGCTGGTTTCCCTTGGGGAAGAAGCTCAACCTCTCCGGCCCTCAGATCCCTCTTTGGTGAAATGGTTGAATTGTCTTGGAATCCA-----CAGGTGACAGCCTCAGGACTGCAACGAGGAATCTGTATGCATCCACTAAAGCCCGTCCTTGGCTCTGTCTTGTGGCTGCTCACCTGGCCTGGAGGCCAGAGATGGGGC-------------GGGAGAAGGGGCAGGGTTCCTCCGGGAGCTCATCCCCATGCCCAGTAGAGTTAGCATAGCCAAGGCT-TCCTGGCAGAGTTTTACATCCAGAGTGATCTTTATTATAGGTAGCAGCAAGAAGCAGGTCCCTCTTGGAAAGACTTGCTGTGAAGTGTGGAGAGTC-CACTGACTAGTAGGAAAGGCCACTGCCTTGAGATGAAATTCCAAAGCCAAAAGGAGA------AGTGCTGTTGAGGAGGTGGGATG------------CGGGAGGTCAACTCCTCAAATCAATCCTTCCAGGAATTCAGGGGAA-GCCACTCCTGACAACCGACT i papAnu2.chr1 I 36 C 0 s chlSab2.chr25 82435457 741 + 85787240 atagatagata---gataACAAAAGTAAGGCTCTTGATTCAGAATTATGCAGTGAGGCCCAAGTTTCAGGAGAACACC----------------CTCTAATAGTGGACTGTAGGGA-GGGCTCCGAGGGCAGTCTCGAGTTAGGAAGTGGTCCTGAAGGAGATAGTGAAGGGAGGGAAACTGAATTGAGGGCTGACACACCGCACAGAAGCCACCTCAGCTGAACAGATCACCAttccaaacctggctcctcctcctactagctggtttcccttggggaagaagctcaacctctctgaccctcagttccctctttggtgaaatggTTGAATTGTCTTGGAATCCA-----CAGGTGACAGCCTCAGGACTGCAGTGAGGAATCTGTATGCATCCACTAAAGTCCGTCCTTAGCTCTGTCTTGTGGCTGCTCACCTGGCCTGGGGGCCAGAGATGGGGA-------------GGGAGAAGGGGCAGGATTCCTCCGGGAGCTCATCCCCATGCCCAGTAGAGTTAGCATAGCCAAGGCT-TCCTGGCAGAGTTTTACATCCAGAGTGATCTTTATTATAGGTAGCAGGAAGAAGCAGGTCCCTCTTGGAAAGACTTGCTTTGAAGTGTGGAGAGTC-CACTGACTAGT-GGAAAGGCCACTGCCTTGAGATGAAATTCCAAAGCCAAAAGGAGA------AGTGCTGTTGAGGAGGTGGGATG------------CGGGAGGTCAACTCCTCAAATCAATCCCTCCAGGAATTCAGGGGAA-GCCACTCTTGAGAACCAGCT i chlSab2.chr25 I 915 C 0 s calJac3.chr19 14116209 748 - 49578535 aaaaaaaaaga---aagaa-aaaaaTAAGGTTCTTGATTCAGAATTATGTGGCGAGGTTCCAGTTTCAGGGGAACATCCTGTCTTGGGGGTGTTCTCTAATAGTGGACTGCAAGGAGGGGTTCTGAGGGCAGCCTTGAGTTAGGAAG-GGTCCCGGGGGGGATGG-GGAGAGAGGGAAATTGAACTGAGGGGGGACGTGCagcacagaagccacctcag-gaaacagatccacgttccagccgtggctcctcctcttactgg-tgtgttcccttggggaaagagctccacctctctgaccgtcagttccctttctggtgaaatggttgaattgtcttagaATCCA-----CAGGTGACC-CCTCAGGACTGCAGCAAGGGGTCTCTATTTGTCCACTAAGGGCCTTCCTAAGCTCTGTA-TGTGGCTGCTCACCTGGCCTGAGGGGCAGAGATGGGGC-------------TGGAGAAGGGGCAGGGTCCCTCTGGGCGGTCATGCCCACGCCCAGTGGAGTTAGCGGAGCCAAGACT-TCCTG-CAGAGTTCTACACCCCGAGTGATCTT-----TAGCTAGCAGCAAGAAGCAGGCCCCTCCTGGAAAGACTTACTCTGAAGTGTGGGGGTCC-TCCTGACGAGCAGGAAAGGCCAGTGCCTTGAGATGAAATTCCAGAGCCAAGAGGAGACTTTGGAGTGCTGTGGAGTGGGTGGGCGG-------------TGGAGCCTAAAGTCCCA----AATCCCATCAGGAATTCAGTGGAATGCCGCTCCTGAGAACCGGCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178710929 514 + 195471971 -------------------------------------------------------------------------------------------------TGAGGGTGGG----------GAAATCTGGAG-------TAAGTTAGA---------CCAGGGGGGGAATGCAATAA--GAAACTGCACTGTGG--------------------------------------------TCCCAGGCTGGGTTTCTTTACTTCCTACCTGCTTTCCCCAGGGGAGCA---CTAACCTCTCTGACCTTCCATTTCCTTCTTGGTGATATGGGTACATTGTCTTAGGATTCAGTTTCTGGACGAC--CCTCAGGACTGTAGTGAGGGCT-TGCAGCCAACCACCACTACCCATTC--------ATCT----GATCCCCACCTGACCTGGACATTCTAGGCAGGGCTGCTGGACAGAGGTGGGGGAGGGACAGG-----------------TCCCCAGGCCT--TAGGGCTGTAGTAGCTAAGGCTATACTG-AAGACGCACACAACAACAGCC-------TTGGATATAGTAGCAGGAGAGGGGCCCTCACTACAG----------------GTGGCAGGTCCTGTTAGCTGGGAGGAATGACCACTGCTCTGACAC-AAACTCAGAAGCCAGGAGCAGG------ATGACTGCTTACAAAA---------------------------------CACA----GGTTCCTCAGGAACACCATGGGGT-GTCTCTGT------------ i mm10.chr1 C 0 C 0 e canFam3.chr7 36290130 271 + 80974532 I a score=59929.000000 s hg38.chr1_KI270759v1_alt 108706 23 + 425601 GGAGGTGGGAAGCCTGAAGAATG s panTro4.chr1 224858375 23 + 228333871 GGAGGTGGGAAGGCTGAAGAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226215871 23 - 229942017 GGAGGTGGGAAGGCTGAAGAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140107079 23 - 143122389 GGAGGTGGGAAGGCTGAAGAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16824883 23 - 229590362 ggaggtgggaaggccgaagagtg i rheMac3.chr1 I 120 I 1 s macFas5.chr1 223585222 23 - 227556264 GGAGGTGGGAAGGCCGAAGAGTG i macFas5.chr1 I 90 I 1 s papAnu2.chr1 16636155 23 - 220367699 ggacgtgggaaggccgaggagcg i papAnu2.chr1 C 0 I 121 s chlSab2.chr25 82436198 23 + 85787240 GGAGGTGGgaaggctgaagaatg i chlSab2.chr25 C 0 I 180 s calJac3.chr19 14116957 23 - 49578535 CCAGCTGGGGAGGCTGGAGAGTG i calJac3.chr19 C 0 I 1 s mm10.chr1 178711443 15 + 195471971 GGAGATAGAAGGAGC-------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36290130 271 + 80974532 I a score=904505.000000 s hg38.chr1_KI270759v1_alt 108729 317 + 425601 AG-------------------------------------------------------------------GGAGTTCA-CGGTAGGGGCCTGAGGTGCGT----GAGGCTTGTTTGTGTTGGTCtgagcagggctgaagccgtggg-cc-cagggcctctttccttcagaaaca-gtcggaagtgaccaagcttcagctcctCCTCCTCCCCAGGCCTCGGCACCCAGGCCCGGTGCTGCGGGGCTCACGTATGGGAACTGAGAAAGGGAATATGGAGTCTTCCTTCTAGGCCCCACAGAGGCC-TC--TTTGACCTCAAGACTTGGCTAGAAACACATTTTGGAAGCTTCCGCATTTCCAAGTCACAGATAATATTTCTACACACACACAGACAC s panTro4.chr1 224858398 315 + 228333871 AG-------------------------------------------------------------------GGAGTTCA-CGGTGGGGGCCCGAGGTGCGT----GAGGCTTGTTTGTGTTGGTCtgagcagggctgaagccgtggg-cc-cagggcctctttccttcagaaaca-gtcggaagtgaccaagcttcagctcctCCTCCTCCCCAGGCCTTGGCACCCAGGCCCAGTGCTGTGGGGCTCACGTATGGGAACTGAGAAAGGGAATATGGAGTCTTCCTTCTAGGCCCCACAGAGGCC-TC--TTTGACCTCAAGACTTGGCTAGAAACACATTTTGGAAGCTTCCACATTTCCAAGTCACAGATAATATTTCT--ACACACACAGACAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226215894 386 - 229942017 GAGGGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTTCACCGGTGGGGGACCCAGGTGCTT----GAGGATCATTTGTGTGGGTCTAAGCAGGGCTGAAGCCGTGGGCCC-CAGCGCCTCTTTCCTTCAGAAACA-GTCGGAAGTGACCAAGCTTCAGCTCCTCCTCCTCCCCAGGCCTCGGCACCCAGGCCCAGTGCCGCGGAGCTCACGCATAGGAACTGAGAAAGGGAATATGGAGTCTTCCTTCTAGGCCCCACAGAGGCC-TC--TTTGACCTCAAGACTTGGCTAGAAACACATTTTGGAAGCTTCCCCATTTCCAAGTCACAGATAGTATTTCTACACACACACAGACAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140107102 318 - 143122389 GAG------------------------------------------------------------------GGAGCTCA-TGGTGAGGGCCAGAGGTACAT----GAGGCTCATTTGTGTTGGTCtgagcagggctgaagccgtggg-cc-cagggcctctttccttcagaaaca-gtcggaagtgaccaagcttcagctcctCCTCCTCCCCAGGCCTCGGCACCCAGGCCCAGTGCTGCAGGGCTCACGCATGGGAACTGAGAAAGGGAATATGAAGGCTTCCTTCTAAGTCCCACAGAGGCC-TC--TTTGACCTCAAGACTTGGCTAGAAACACATTTTGGAAGCTTCCCCATTTCCAAGTCACAGATAATATTTCTATacacacacacacac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16824907 312 - 229590362 ag-------------------------------------------------------------------ggagTTCA-CAGTGAGGGCCCGAGGTGCGT----GAGGCCCGTTTGTGTTGGTCtgagcagggctgaagccgtggg-tc-cagggcctctttccttcagaaaca-gtcggaagtgaccaagcttcagctcctCCTCTTCCCCAGGCCTCGGCACCCAGGCCCAGTGCTGTGGGGCTCACGCATGGGACCTGAGAAGGGGAATATGGAGTCTTCCTTCTTGGCCCCACAGAGGCC-TC--TTTGACCTCAGGATTTGGCGAGAAACACATTTTGGAAGCTTCCTCATTTCCAAGTCACAGATAATATTTGTATACACACACA----- i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223585246 317 - 227556264 AG-------------------------------------------------------------------GGAGTTCA-CAGTGAGGGCCCGAGGTGCGT----GGGGCCCGTTTGTGTTGGTCTGAGCAGGGCTGAAGCCGTGGG-TC-CAGGGCCTCTTTCCTTCAGAAACA-GTCGGAAGTGACCAAGCTTCAGCTCCTCCTCTTCCCCAGGCCTCGGCACCCAGGCCCAGTGCTGTGGGGCTCACGCATGGGACCTGAGAAGGGGAATATGGAGTCTTCCTTCTTGGCCCCACAGAGGCC-TC--TTTGACCTCAGGATTTGGCGAGAAACACATTTTGGAAGCTTCCTCATTTCCAAGTCACAGATAATATTTGTATACACACACACActc i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16636299 310 - 220367699 AG-------------------------------------------------------------------GGAGTTCA-CAGTGAGGGCCCGAGGTGCGT----GAGGCCCGTTTGTGTTGGTCTGAGCAGGGATGAAGCCGTGGG-TC-CAGGGCCTCTTTCCTTCAGAAACA-GTCGGAAGTGACCAAGCTtcagctcctcctcttccccaggcCTCGGCACCCAGGCCCAGTGCTGTGGGGCTCACGCATGGGACCTGAGAAGGGGAATATGGAGTCTTCCTTCTTGGCCCCACAGAGGCC-TC--TTTGACCTCAGGATTTGGCGAGAAACACATTTTGGAAGCTTCCTCATTTCCAAGTCACAGATAATATTTGtatacactct------- i papAnu2.chr1 I 121 C 0 s chlSab2.chr25 82436401 317 + 85787240 AG-------------------------------------------------------------------GGAGTTCA-CGGTGAGGGCCCGAGGTGCAT----GAGGCTCATTTGTGTTGGTCTGAGCAGGACTGAAGCCTTGGG-TC-CAGGGCCTCTTTCCTTCAGAAACA-GTCGGAAGTGACCAAGCTTCAGCTCCTCCTCTTCCCCAGGCCTCAGCACCCAGGCCCAGTGCTGTGGGGCTCACGCATGGGAACTGAGAAGGGGAATATGGAGTCTTCCTTCTTGGCCCCACAGAGGCC-TC--TTTGACCTCAGGATTTGGCTAGAAACACATTTTGGAAGCTTCCTCATTTCCAAGTCACAGATAATATTTGTacacacacacacacac i chlSab2.chr25 I 180 C 0 s calJac3.chr19 14116981 315 - 49578535 GG-------------------------------------------------------------------CAAGCTCG-CAGTGA-GGCCCGAGGTGTGTTGTGAGGGTTCTTTTGTGTTGGTTTGAGCAGGGCTGAAGCCGTGGA-CC-CAGGGCCTCTTTCTTTCGGAGCAT-GTCAGAAGTGACCAAGCTTCAGCTCCCCCTCCTCCCCAGGCCTCTCCAGC--AGCCGGGTGCTGCAGGGCCCACCCATGAGAACTGAGAAGGGGAATATGGAGT----CTTTTAGGCCCCACGGAGGCCTTC--TTTGACCTAAATATTGGGTTAAAAGCACATTTTGGAAGCTTCCCCATTTCCAAGTCACAGGTAGTATTTCTacacacacacacacac i calJac3.chr19 I 1 C 0 s mm10.chr1 178711458 253 + 195471971 AG-------------------------------------------------------------------GGGATCCT-CACTGATGGCT---GATGGGT----AAG----------------------AGGACAGAAGCCAGGGG-TCACAGGGGCTCCTTCCTCCAGAAGCATGTTAGAAATGACCTAA--------CCTCCTCT-------------------GGGCCTGGTGTTGCACTGTTC---------AGCCTACAGCAGGAAAACAGTGGCTCTCTCCCATGCCC-----AGGCC-TTTATTTCACCTGGAGATTTGTCTGAGAGCACA-TCTGGAAGCCTCTCTATTAGCACATTATAGATAGTGTATG-acacacacacatgcac i mm10.chr1 C 0 I 383 e canFam3.chr7 36290130 271 + 80974532 I a score=-14983.000000 s hg38.chr1_KI270759v1_alt 109046 2 + 425601 A------------------------------C s panTro4.chr1 224858713 2 + 228333871 A------------------------------C i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226216280 2 - 229942017 A------------------------------C i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140107420 18 - 143122389 a--------------cacacacacacTCACTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16825219 17 - 229590362 ---------------CTCTCTCTCACTCTCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223585563 30 - 227556264 tctctct--ctctctctctctctctctctctc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16636609 17 - 220367699 ---------------ctctctctctctctctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82436718 24 + 85787240 acacaca--------cacacacacacacTCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14117296 32 - 49578535 acacacacacacacacacacacacacacgcac i calJac3.chr19 C 0 C 0 e mm10.chr1 178711711 383 + 195471971 I e canFam3.chr7 36290130 271 + 80974532 I a score=3073787.000000 s hg38.chr1_KI270759v1_alt 109048 1021 + 425601 GCTCTTATTTTAGAGAAGGGACAGAACATTTGTCTCTGGCTGACTACAAGTT-----TCTTTATCTACCTTCCT------TTCAAATCTCCTGAGGACAGAGACTAAGCAAAGTTTACCTTTTGTAATCCCCCAAGTCTGTCTGGTGCTCAGGTTATTCAGTAAACTTCAGTAACTGAGGTCAGATGGTAGAAGGAaggggaa--aaaaacgggaatcagaggcctgtgtttccagctcaacttccctacttgacggctgagtggctttggaccaatcatcggactcctctcctcgcctctgttttctcatctgtgaagtggaaa-caatagccaaccagtctacataacttaatgttg----ttTCCAATGTGCCTTCTATGAGGAAGGAGAGG--TTATCAGCAGCAAAGGGATAGACACATCTGAGGGCATCCCTTATGCTGTTAATGACTGTTTAATTGTCATAGAATATGGATCACTGCCATTCTTTGCTTGACATAAAAACAACTCAGAGACACACTGTCACCGTTTCAGAGAGCTTCAGAAAGAATTTGGATTGGAGTGCTTCTTTCATAGCCAGATCTCATGTAGTAGGTCATTA-TTTTGTTTCTTTGATTAATAGGACAATTCGGTTACAACCGAAGGTACTGTAACCCTGCAACCCTAGAGAGGATTTGCAGGGCTGAGGAAGAGTAAATTCCTATTAGCAAGTATCTTGGT----GGCAAGCAAGATGGCACCTTGGTAAGAAGTTATCCATC-CAACTCAGCACTCCAAAGACCTGCATACCAGTGTATGCGGGAAAAACCATAGCCGGTCT-AACAGGGAGGCGCCTTCTCGCTCAGAATCATCTACAATGGATATGATTGTAATTGTTGAA--GAAGCTACAGCTGCTTCTACTGAGAGCAAGCCTCGCTCTTCTGTTTTTCAGAATTATAAAAATGGAGCTAAACAGAGATAATGGAAGTTGCTTTTGGAGCACTATCTTGCAGACTGTCTTTGCA-CAAGATATTGACAGGAAATGTCTGCACGTTTCTTAGAG s panTro4.chr1 224858715 1021 + 228333871 GCTCTTATTTTAGAGAAGGGACAGAACATTTGTCTCTGGCTGACTACAAGTT-----TCTTTATCTACCTTCCT------TTCAAATCTCCTGAGGACAGAGACTAAGCAAAGTTTACCTTTTGTAATCCCCCAAGTCTGTCTGGTGCTCAGGTTATTCAGTAAACTTCAGTAACTGAGGTCAGATGGTAGAAGGAAGGGGGA--AAAAA-Gggaatcagaggcctgtgtttccagctcaacttccctacttgacggctgagtggctttggaccagtcatcggactcctctcctcgcctctgttttctcatctgtgaagtggaaa-caatagccaaccagtctacataacttaatgttg----tttccaatgagccttctatgaggaaggagagg-tttatcagcagcaaagggatagacacatctgagggCATCCCTTATGCTGTTAATGACTGTTTAATTGTCATAGAATATGGATCACTGCCATTCTTTGCTTGACATAAAAACAACTCAGGGACACACTGTCACCGTTTCAGAGAGCTTCAGAAAGCATTTGGATTGGAGTGCTTCTTGCATAGCCAGATCTCATGTAGTAGGTCATTA-GTTTGTTTCTTTGATTAATAGGACAATTCAGCTACAACCGAAGGTACTGTAACCCTGCAACCCTAGAGAGGGTTTGCAGGGCTGAGGAAGAGTAAATTCCTATTAGCAAGTATCTTGGT----GGCAAGCAAGATGGCACCTTGGTAAGAAGTTATCCATC-CAACTCAGCACTCCAAAGACCTGCATACCAGTGTATGCAGGAAAAACCAGAGCCGGTCT-AACAGGGAGGCGCCTTCTCGCTCAGAATCATCTACAATGGATATGATTGTAATTGTTGAA--GAAGCTACAGCTGCTTCTACTGAGAGCAAGCCTCGCTCTTCTGTTTTTCAGAATTATAAAAATGGAGCTAAACAGAGATAATGGAAGTTGCTTTTGGAGCGCTATCTTGCAGACTGTCTTTGCA-CAAGATATTGACAGGAAATGTCTGCACGTTTCTTAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226216282 1018 - 229942017 ACTCTTATTTTAGAGAAGGGAGAGAACATTTGTCTCTGGCTGACTACAAG---------TTTATCTACCTTCCT------TTCAAATCTCCTGAGGACAGAGACTAAGCAAAGTTTACCTTTTGTAATCCCCCAAGTCTGTCTGGTGCTCAGGTTATTCAGTAAACTTCAGTAACTGAGGTCAGATGGCAGAAGGGAGGGGAA--AAAAAAGAgaatcagaggcctgtgtttccagctgaacttccctacctgatggctgagtggctttggaccagtcatcggactcctctcctcgcctctgttttctcatctgtgaagtggaaa-caatagccaaccagtctacataacttaatgttg----ttTCCAATGAGCCTTCTACGAGGAAGGAGAGG-TTTATCAGCAGCAAAGGGATAGACACATCTGAGGGCATCCCTTATGCTGTTAATGACTGTTTAATTGTCATAGAATATGGATCACTGCCATTCTTTGCTTGACATAAAAACAACTCAGGGACAAACTGTCACCGTTTCAGAGAGCTTCAGAAAGAATTTGGATCGGAGTGGTTCTTTCATAGCCAGATCTCATGTAGTAGGTCGTTA-TTTTGTTTCTTTGATTAATAGGACAATTCAGTTACAACTGAAAGTACTGTAACCCTGTAACCCTAGAGAGGGTTTGCAGGGCTAAGGAAGAGTAAATTCCTATTAGCAAGTATCTTGGT----GGCAAGCAAGATGGCACCTTGGTAAGAAGTTATCCATC-CAACCCAGCACTCCAAAGACCTGCATACCAGTGTATGTGGGAAACACCATAGCCGGTCT-AACAGGGAGGCGCCTTCTCGCTCAGAATCATCTACAATGGATATGATTGTAATTGTTGAA--GAAGCTACAGCTGCTTCTACTGAGAGCAAGCCTCGCTCTTCTGTTTTTCAGAATTATAAAAATGGAGCTAAACAGAGATAATGGAAGTTGCTTTTGGAGCACTATCTTGCAGACTGTCTTTGCA-CAAGATATTGACAAGAGATGTCTGCACGTTTCTTACAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140107438 1016 - 143122389 ACTCTTATTTTAGAGAATGGAGAGAACATTTGTCTCTGGCTGACTACAAG---------TTTATCTACCTTCCT------TTCAAATCTCCTGAGGACAGAGACTAAGCAAAGTTGACCTTTTGTAATCCCCCGAGTCTGTCTGGTGCTCAGGTTATTCAGTAAACTTCAGTCACTGAGGTCAGATGGTGGAAGGAAGGGGAA--AGAA--GGGAATCAGAGGCCTGTGCTTCCAGCCGAACTTCCCCACTTGACGGCTCAGTGGCTTTGGACCCATCATCGGACTCCTCTCCTCGCCTCTGTTTTCTTGTCTGTGAAGTGGAAACCAGTAGCCAACCCGTCTACATAACGTAATGTTG----TTTGCAGTGAGCCTTCTATGAGGAAGGAGAGG-TTTAGCAGCAGCAAAGGGACAGACACGTCTGAGGGCATCCCTTATGCTGTTAATGACTGTTTAATTGTCATCGAATATGGATCACTGCCATTCTTTGTTTGACATAAAAACAACTCAGAGACAAACTATCACCGTTGCAGAGAGCTTCAGAAAGAATTTGGATTGGAGTGGTTCTTTCGTAGCCAGATCTCATGTAGTAGGTCATTA-TTTTGTTTCTTCGATTAATAGGACAATTCAGTTACAACCCATAGTATTGTAATCCTGTAACCCTAGGGAGGCTTTGCA-GGTTAAGGAAGAGTAAATTCCTCTTAGCAAGTATCTTGGT----GGCAAGCAAGATGGCACCTTGGTAAGAAGTTATCCATC-CAACTCAGCACTCCAAAGACCTGCATACCAGTGTATGCGGTAAAAACGGTAGCCGGTCT-AACAGGGAGGCTCCTTCTGTCTCAGAATCATCCACAATGGATATGATTGTAATTGTTGAA--GAAGCTACAGCTGCTTCTACTGAGAGCAAGCCTCACTCTTCTGTTTTTCAGAATTATAAAAATGGAGCTAAACAGATATAATGGAAGTTGCTTTTGGAGCGCTATCTTGCAGATTGTCTTTGCA-CAAGATATTGACAAGAAACGTCTGCACATTTCTTAGAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16825236 1022 - 229590362 TCTCTCATTTTAGAAAAGGGAGAGAACGTTTGTCTCTGGCTGACTACAAG---------TTTATCTACCTTCCT------TTCAAATCTCCTGAGGACAGAGACTAAGCAAAGTTTACCTTTTGTCATCCCCCAAGTCTGTCTGGTGCTCAGGTTATTCAGTAAACTTCAGTAACTGAGGTCAGGTGGTAGAAGGAAGGGAAAAGAAAAAAGggaatcagaggcctgtgtttccagctgaacttccttacttgacagcagagtggctttggaccaatcatcggactcctctcctcgcctctgtgttctcatctgtgaagtggaaa-ctatagccaacctgtctacataactgaatgttg----tTTCCAACGAGCCTTCTTTGAGGAAGGAGAGG-TTTATCAGCAGCAAAGGGATAGACGCATCTGAGAGCATCCCTTAAGCTGTGAATGGCTGTTGAATTGTCACAGAATATGGATCACTGCCATTCTTTGCTTGACATAAAAACCACTCAGGGACAAACTGTCACTGTTTCAGAGAGCTTCAGAAAGAATTTGGATTGGAGTGGTTCTTTCATAGCCAGATCTCATACAGTAGGTCATTGTTTTTGTTTCTTTGATTAATAGGACAATTCAGTTACAACCGATGGTATTGTAACCCTGTAACCCTCGAGAGGGTTTGCAGAGCTAAGGAAAAGTAAATTCCTGTTAACAAGCATCTTGGT----GGCAAGCAAGATGGCACCTTGGTAAGAAGTTATCCATCAAAACTCAGCACTCCAAAGACCTGCACACCAGTGTGTGTGGGAAAAACGACACTTGGTTT-AACAGGGAGGCTCCTTCTCTCTCAGAATCATCTACAATGGACATGATTGTAATTGTTGAA--GAAGCTACAGCTGCTTCTACTGACAGCAAGCCTAGCTCTTCTGTTTTTCAGAATTATAAAAATGCAGCTAAACAGAGATAATGGAAGTTGCTTTTGGAGAGCTATCTTGCAGACTGTCTTTGCA-CAAGATATTGACAAGAAATGTCTACACATTTCTTAGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223585593 1022 - 227556264 tctctcATTTTAGAAAAGGGAGAGAACGTTTGTCTCTGGCTGACTACAAG---------TTTATCTACCTTCCT------TTCAAATCTCCTGAGGACAGAGACTAAGCAAAGTTTACCTTTTGTCATCCCCCAAGTCTGTCTGGTGCTCAGGTTATTCAGTAAACTTCAGTAACTGAGGTCAGGTGGTAGAAGGAAGGGAAAAGAAAAAAGggaatcagaggcctgtgtttccagctgaacttccttacttgacagctgagtggctttggaccaatcatcggactcctctcctcgcctctgtgttctcatctgcgaagtggaaa-ctatagccaacctgtctacataactgaatgttg----tTTCCAACGAGCCTTCTTTGAGGAAGGAGAGG-TTTATCAGCAGCAAAGGGATAGACGCATCTGAGAGCATCCCTTAAGCTGTGAATGGCTGTTGAATTGTCACAGAATATGGATCACTGCCATTCTTTGCTTGACATAAAAACCACTCAGGGACAAACTGTCACTGTTTCAGAGAGCTTCAGAAAGAATTTGGATTGGAGTGGTTCTTTCATAGCCAGATCTCATACAGTAGGTCATTGTTTTTGTTTCTTTGATTAATAGGACAATTCAGTTACAACCGATGGTATTGTAACCCTGTAACCCTCGAGAGGGTTTGCAGAGCTAAGGAAAAGTAAATTCCTGTTAACAAGCATCTTGGT----GGCAAGCAAGATGGCACCTTGGTAAGAAGTTATCCATCAAAACTCAGCACTCCAAAGACCTGCACACCAGTGTGTGTGGGAAAAACGACACTTGGTTT-AACAGGGAGGCTCCTTCTCTCTCAGAATCATCTACAATGGACATGATTGTAATTGTTGAA--GAAGCTACAGCTGCTTCTACTGACAGCAAGCCTAGCTCTTCTGTTTTTCAGAATTATAAAAATGCAGCTAAACAGAGATAATGGAAGTTGCTTTTGGAGAGCTATCTTGCAGACTGTCTTTGCA-CAAGATATTGACAAGAAATGTCTACACATTTCTTAGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16636626 1021 - 220367699 tctctcattttagaAAAGGGAGAGAACGTTTGTTTCTGGCTGACTACAAG---------TTTATCTGCCTTCCT------TTCAAATCTCCTGAGGACAGAGACTAAGCAAAGTTTACCTTTTGTCATCCCCCAAGTCTGTCTGGTGCTCAGGTTATTCAGTAAACTTCAGTAACTGAGGTCAGATGgtagaaggaaggggaa--aaaaaagggaatcAGAGGCCTGTGTTTCCAGCTGAGCTTCCTTCCTTGACAGCTGAGTGGCTTTGGACCAATCATCGGACTCCTCGCCTCGCCTCTGtgttctcatctgtgaagtggaaa-CTATAGCCAACCTGTCTACATAACTGAATGTTG----TTTCCAACGAGCCTTCTATGAGGAAGGAGAGG-TTTATCAGCAGCAAAGGGATAGACACATCTGAGAGCATCCCTTAAGCTGTGAATGGCGGTTGAATTGTCACAGAATATGGATCACTGCCATTCTTTGCTTGACATAAAAACCACTCAGGGACAAACTGTCGCTGTTTCAGAGAGCTTCAGAAAGAATTTGGATTGGAGTGGTTCTTTCATAGCCAGATCTCATACAGTAggtcattgtttttgtttctttgattaaTAGGACAATTCAGTTACAACCGATGGTATTGTAACCCTGTAACCCTCGAGAGGGTTTGCAGAGCTAAGGAAAAGTAAATTCCTGTTAACAAGCATCTTGGT----GGCAAGCAAGATGGCACCTTGGTAAGAAGTTATCCATCAAAACTCAGCACTCCAAAGACCTGCACACCAGTGTGTGTGGGAAAAACGACACTTGGTTTAAACAGGGAGGCTCCTTCTCTCTCAGAATCATCTACAATGGACATGATTGTAATTGTTGAA--GAAGCTACAGCTGCTTCTACTGACAGCAAGCCTAGctcttctgtttttcagaattatAAAAATGCAGCTAAACAGAGATAATGGAAGTTGCTTTTGGAGAGCTATCTTGCAGACTGTCTTTGCA-CAAGATATTGACAAGAAATGTCTACACATTTCTTAGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82436742 1024 + 85787240 TCTCTCATTTTAGAGAAGGGGGAGAACATTTGTCTCTGGCTGGCTACAAGTT-----TCTTTATCTACCTTCCT------TTCAAATCTCCTAAGGACAGAGACTAAGCAAAGTTTACTTTTTGTCATCCCCCAAGTCTGTCTGGTGCTCAGGTTATTCAGTAAACTTCAGTAACTGAGGTCAGATGGTAGAAGGAAGGGGAAA-AAAAAAGggaatcagaggcctgtgtttccagctgaacttccttacttggcagctgagtggctttggaccaatcatcggactcctctcctcgcctctgtgttctcatctgtgaagtggaaa-caatagccaacctgtctacataactgaatgttg----tTTCCAACGAGCCTTCTATGAGGAGGAAGAGG-TTTATCAGCAGCAAACGGATAGACACATCCGAGAGCATCCCTGAAGCTGTGAATGGCTGTTGAATTGTCACAGAATATGGATCACTGCCATTCTTTGCTTGACATAAAAACCACTCAGGGACCAACTGTCACTGTTTCAGAGAGCTTCAGAAAGAATTTGGATTGGAGTGGTTCTTTCATAGCCAGATCTCATACAGTAGGTCATTGTTTTTGTTTCTTTGATTAATAGGACAATTCAGTTACAACCGATGGTATTGTAACCCTGTAACCCTCGAGAGGGTTTGCAGAGCTAAGGAAAAGTAAATTCCTGTTAACAAGCATCTTGGT----GGCAAGCAAGATGGCACCTTGGTAAGAAGTTATCCATCAAAACTCAGCACTCCAAAGACCTGCATACCAGTGTGTGTGGGAAAAACGACACTCGGTCT-AACAGGGAGGCCCCTTCTCTCTCAGAACCATCTACAATGGACATGATTGTAATTGTTGAA--GAAGCTACAGCTGCTTCTACTGACAGCAAGCCTAGCTCTTCTGTTTTTCAGAATTATAAAAATGCAGCTAAACAGAGATAATGGAAGTTGCTTTGGGAGAGCTATCTTGCAGACTGTCTTTGCA-CAAGATATTGACAAGAAATGTCTACACATTT-TTAGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14117328 1014 - 49578535 acCCTTATTTTAGAGAAGGGAGAGAGCGCACGTCTCTGGCTGACTACAAGTT-----TCTTTATCTAGCTTCCT------TCCAAATCTCCTGAGGACAGAGACTAACCAATGTTTGCCTTCTGTAATCCCCCAAATCTGTGTGGGGCCCGGGTTACTCAGTACACTTCAGTAACGAAGGTCAGATGGCAGAAGGAAGGGAAA--TAAA--TGCAATTggaggcctctatttccagctgaacttccctatgtgatggctgagggtcattggaccaatcatcagactcctttcctggcctctgttttctcatctgtgaaatgggaa-taacagccaacccgtctacataacttaatgttg----tttccagtgaaccttctatgaggaaggagcgg-tttatcagcagcaaaggggtggacacat--gagggCATCCCTTACGCTGTTAATGACTGTTTAATTGTCGTAGACTGTGGATCACTGCCATTCTTTGCTAGACATGAAAACAGCTCAGGGATAAGGAATCGCAGTTTCAGAGAGCTTCAGA----ATTTGGATTGGAGTGGTTCTTTCGTAACCAGAGCTCGTGTAATAGGTC-TTA-TGTTGTTTCTTTGATTAATAGGATGATTCAGTTACAACCGATGGTATTGCAGCCCCGCGTCCCTAGAGAGGGTTTGCAGGGTTAAGGAAAAGTAAGTTCCTATGAGCAAGTATCTCAGTAGCAAGCAAGCAAGGTAGCACCTTGGTAAGAAGGTATCCACTAAAACTCAGCCCTCCGAAGGCCTGCATACCAGTGTAGGTAGGAAAAATGATAGCTTGTCT-AACAGGGCAG---CTTCTCTCTTGGAATCATCTACAATGGATATGATTTTAATTGTTAAA--GAGGCTACCGCTGCTTCTACTGAGAGCAAGCCTAGCTCTTCCGTTTTTCAGAATTATACAAATGTAGCTCGACGGAGATAATGGAAGTTGCTTTTGGAGAGCTATCTTGCAGACTGTCTTTGCA-CAAGATATTGACAAGAGATGTCTGCACATTT-TGAGAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178712094 939 + 195471971 GCCTTTATTCT--------GAGACAGGATATGTTCTAGGTTTGTTACATGTTTCTAATCTATGTCCAGTTTTCTGGTTTGCTTCTTTCCCGTGAAGTGATACACATAGCACAGTTTACTTTCTGTGAGCCCTCAAATCTACTCGATCCTCAGCTTGTTCAACACACGTTGGTAAC------CAGAtggactgaggaaggaaaa--tagaa-tggcttcag-ggcctgcattttc---------tccat--------gccgtgtgaccttgttcgcatcatgtatctcct----tcatagctctttcctcatctgcgagctgggag-caaGAGCCAAGCCTCCTAGATAGCTTTGTGTTGCCCATCTCCCATGGGCCTT---GGGGGAGGGATAGGGCTTATCAGTCTTAGAGGGTTA----CGTTAGA-----------------------------TAATGGTGATACGTTTAGTATCTTCAGCCTT-TCTGTTTAACATGTGTGCAGCTCTGGGATGGGCTACCTCCAGTTT--AGAGCTGAATAAGGAATTTGTGTTGGA-CAGATCTTTCCTAACTGGGTCTTGT-CAGTGGGCAAGTA--TTTGTCCCTTTGACTCCTGAGGTAATTCATTCGTGACTGATGGTATTGTA------------TAGTGATAATTGCCAAGGTTGAAG-GGAGT-AGTTCTTGACAGTTAGTGACTTGGG----GACATACAAGATAGCTCATTGGTGAGAAGTTATCAGCGGAGCCCCAGCACT--GGGAGCCTGCCTTCTAGTACAGGGTGGGTGAGTGCTGGCTCATCT-GATAAGCAGACTCCTT---TCTCATAATCATTTGGAAACAATATGATTTTGATTGTTGAGTTAAAACAACCACAGCTT---CGGAGAGGGTGCCTGGCTCCTCTGACCTTCAGAGTGATAAAGATGTAGCTGGACAG--GTCCCAGAAGTTGAACACAGCCAGCTCCCCCTTTTACTGTCAGTGCAGCATACTGTCAGCTGGGGATGCCTGTACAAGTTGTAAAG i mm10.chr1 I 383 I 505 e canFam3.chr7 36290130 271 + 80974532 I a score=784716.000000 s hg38.chr1_KI270759v1_alt 110069 272 + 425601 CCTCCTGAATCTTCAGCATCTAC--------TTTTTTTTTTTTTTTtgcctgacatataccaagcacccaacacatggttgttcatacgaatgaatgaaCAAATGAACTAGTAGACTAAAAAAGAGGCAGCTCTTGATCCCCAAACATTGTGGAGCCAAAACACTATCCTTTGACAGTGATGAGGATGGGAGAAAAGACTGTCATATCTTAAGAATTAAACAAAAT--------Aggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggt s panTro4.chr1 224859736 280 + 228333871 CCTCCTGAATCTTCAGCATCTACttttttttttttttttttttttttgcctgacatataccaagcacccaacacatggttgttcatacgaatgaatgaaCAAATGAACTAGTAGACTAAAAAAGAGGCAGCTCTTGATCCCCAAACATTGTGGAGCCAAAACACTATCCTTTGACAGTGATGAGGATGGGAGAAAAGACTGTCATATCTTAAGAATTAAACAAAAT--------Aggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226217300 267 - 229942017 CCTCCTGAATCTTCAGCATCTAC------------TTTTTTTTTTTTGCCTGACATATACCAAGCACCCAACACGTGGTTGTTCATACGAATGAATGAACAAATGAACTAGTAGAC-AAAAAAGTGGCAGCTCTTGATCCCCAAACATTGTGGAGCCAAAACATTATCCTTTGACAGTGATGAGGATGGGAGAAAAGACTGTCATATCTTAAGAATCAAACAAAAT--------Aggccaggcgcggtggctcacgcctgtaatcccagcaccttgggaggctgaggt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140108454 268 - 143122389 CCTCCTGAATCTTCAGCATCTAC------------TTTTTTTTTTTtgcctgacatataccaagcacccaacacatggttgttcatacgaatgaatgaaCAAATGAACTAGTAGACTAAAAAAGAGGCAGCTCTTGATCCCCAAACATTGTGGAGCCAAAACACTATCATTTGACAGTGATGAGGATGGGAGAAAAGGCTGTCATATCTTAAGAATCAAACAAAAT--------Aggccaggtgcggtggctcatgcctgtaatcccagcactttgggaggctgaggt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16826258 275 - 229590362 CCTCTTGAATCTTCAGCATCTAC-----TTTTTTTTTTTTTTTTTTTGCCTGACGTATACCAAGCACCCAACACGTGGCTGTTCACACAAATGAATGAACAAATGAACTAGTAGACTAACAAAGAGGCAGCTCTTGATCCCCAAACATTGTGGAGCCAAAACCCTGTACTTTGACAATGATGAGGATGCGAGAAAAGACTGTCATAGTTTAAGAATCAAACAAAAT--------Aggccagatgcagcggctcacgcctgtaatcccagcactttgggaggctgaggt i rheMac3.chr1 C 0 I 244 s macFas5.chr1 223586615 277 - 227556264 CCTCTTGAATCTTCAGCATCTAC---tttttttttttttttttttttGCCTGACGTATACCAAGCACCCAACACGTGGCTGTTCACACAAATGAATGAACAAATGAACTAGTAGACTAACAAAGAGGCAGCTCTTGATCCCCAAACATTGTGGAGCCAAAACCCTGTACTTTGACAATGATGAGGATGCGAGAAAAGACTGTCATAGTTTAAGAATCAAACAAAAT--------Aggccaggtgcagcggctcacgcctgtaatcccagcactttgggaggctgaggt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16637647 271 - 220367699 CCTCTTGAATCTTCagcatctac---------tttttttttttttttgcctgacgTATACCAAGCACCCAACACGTGGCTGTTcacacaaatgaatgaacaaatgaactaGTAGACTAACAAAGAGGCAGCTCTTGATCCCCAAACATTGTGGAGCCAAAACCCTATACTTTGACAATGATGAGGACGCGAGAAAAGACTGTCATAGTTTAAGAATCAaacaaaat--------aggccaggtgcagcggctcacgcctgtaatcccagcactttgggaggctgaggt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82437766 279 + 85787240 CCTCTTGAATCTTCAGCATCTGt-tttttttttttttttttttttttGCCTGACATATACTAAGCACCCAACACGTAGCTGTTCACACAAATGAATGAACAAATGAACTAGTAGACTAACAAAGAGGCAGCTCTTGATCCCCAAACATTGTGGAGCCAAAACCCTATACTTTGACAATGATGAGGATGCGAGAAAAGACTGTCATATTTTAAGAATCaaacaaaat--------aggccaggtgcggcggctcacacctgtaatcccagaactttgggaggctgaggt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14118342 265 - 49578535 CCTCCTGAATCTCCAGCA---------------------TTTTTTCCCCCTGACATACACCAAGCACCCAACACAGGATCGTTCATACGAATGAATGAACAAATGAACTAGCAGGCTAAAAGAGAGGCAGCCCTTGATCCCCAAACATTGTGGAGCCAAAACACTG--CTTTGACAGTGATTAGGGTGGGAGAAAAGACTGACATATCTTAAGAATCAGACAAAATAGAAAAGAAggctgggcatggtggctcacacctgtaatcccagcactttgggaggccgaggt i calJac3.chr19 C 0 C 0 e mm10.chr1 178713033 505 + 195471971 I e canFam3.chr7 36290130 271 + 80974532 I a score=457777.000000 s hg38.chr1_KI270759v1_alt 110341 239 + 425601 gggcggatcacctgaggtcgggagttcgagatcagcctggctaccatggagaaaccccgtctctagt-----------------------------aaaaatac-------aaaaaaaaaaaaaaaaagttagccaggcacaggggcgcatgcctgtaatcccagctactctggaggctgaggtaggagaatctcttgaacccggaaggcggaggttgcagtgagctgagatcacgccattgcactccagcctgggcaacaagagcgaaactctg s panTro4.chr1 224860016 268 + 228333871 gggcggatcacctgaggtcgggagttcaagatcagcctggctaccatggagaaaccccgtctctagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa-------aaaaaaaaaaaaaaaaaattagccaggcacaggggcgcatgcctgtaatcccagctactccaaaggctgaggtaggaaaatctcttgaacccggaaggcaaaggttgcagtgagctgaaatcaccccattgcactccagcctgggcaacaagagcgaaactctg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226217567 241 - 229942017 gggcggatcacctgaggtcgggagttcgagatcagcttggccaccatggagaaaccccgtctctagt---------------------------aaaaaaaaaa-------aaaaaaaaaaaaaaaatattagctaggcgcgggggcgcatgcctgtaatcccagctactccggaggctgaggtaggagactcgcttgaacccagaaggtggaagttgcagtgagccgagatcgcaccattccactccagcctgggcaacaaaagcaaaactctg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140108722 228 - 143122389 gggcggatcacctgaggtcgggggttcgagatcagcctggccactatggagaaaccccgtctctagt-----------------------------aaaaatac-------aaaaaaaaaaaaaaaa--ttagccagatgcaggggc---------taatcccagctactccggaggctgaggtaggagaatcgcttgaacccggaaggcggaggttgcagtgagccgagattgcgccattgcattccagcctgggcaacaagtgcgaaactctg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223586892 246 - 227556264 gggcagatcacctgaggtcgggagttccagattagcctggccaccatggagaaaccccatctctact-----------------------------aaaaatacaaaaaaaaaaaaaaaaaaaaaaaaattagccaggcccaggggcgcatgcctgtaatctcggctacttgggagactgaggtaggagaatcgcttgaacgtgggaggcggaggctgcagtgagccaagattgcgccactgcacgccagcctgggcaagaagagcaagactctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16637918 239 - 220367699 gggcagatcacccgaggttgggagttccagattagcctggccaccatggagaaaccccatctctact-----------------------------aaaaatac-------aaaaaaaaaaaaaaaaaattagccaggcccaggggcacatgcctgtaatcccggctactcgggagactgaggtaggagaatcgcttgaacgtgggaggcggaggctgcagtgagccaagatcgcgccactgcacgccagcctgggcaagaagagcaagactctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82438045 244 + 85787240 gggcagatcacctgaggtcgggagttccagattagcctggccaccatggagaaaccccatctctact----------------------------aaaaaatac---aaaaaaaaaaaaaaaaaaaaaattagccaggcgcaggggcacatgcctgtaatcccggctactcgggagactgaggtaggagaattgcttgaacgtgggaggcggaggctgcagggagccaagattgcgccactacactccaacctgggcaagaagagcaagactctg i chlSab2.chr25 C 0 I 113 s calJac3.chr19 14118607 224 - 49578535 gggcggatcac--aaggtcagaaggttgagaccatcctggctaacacagtgaaaccccgtgtctact-----------------------------aaatatac-------aaaaaa------------ttagccagctgtggtggtgcatgcctgtagttccagctacttgggaggctgaggcaggagaaccacttgaacccgggaggcagaggttgcagtgagctgagattgcaccactgcactcccgcctgggcaac-agagcaagacccca i calJac3.chr19 C 0 C 0 e mm10.chr1 178713033 505 + 195471971 I e canFam3.chr7 36290130 271 + 80974532 I e rheMac3.chr1 16826533 244 - 229590362 I a score=10696.000000 s hg38.chr1_KI270759v1_alt 110580 4 + 425601 tctc s panTro4.chr1 224860284 4 + 228333871 tctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226217808 4 - 229942017 tctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140108950 4 - 143122389 tctc i nomLeu3.chr5 C 0 I 3 s macFas5.chr1 223587138 4 - 227556264 tctc i macFas5.chr1 C 0 I 4 s papAnu2.chr1 16638157 4 - 220367699 tctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82438402 4 + 85787240 TCTC i chlSab2.chr25 I 113 C 0 s calJac3.chr19 14118831 4 - 49578535 tctc i calJac3.chr19 C 0 C 0 e mm10.chr1 178713033 505 + 195471971 I e canFam3.chr7 36290130 271 + 80974532 I e rheMac3.chr1 16826533 244 - 229590362 I a score=339964.000000 s hg38.chr1_KI270759v1_alt 110584 133 + 425601 aaaaaaaaaaaaaaaaaaagaatcaaacaaaaTAGAAAAGCAATGAAATGTTTTAAAGAAATGACTCTTACTTAAAAGACTTAAGAAAATTTACGTAGATACACGTGAGCAGTAGAAAGTAAGAATAGCTCAG s panTro4.chr1 224860288 129 + 228333871 ----aaaaaaaaaaaaaaagaaTCAAGCAAAATAGAAAAACAATGAAATGTTTTAAGGAAATGACTCTTACTTAAAAGACTTAAAAAAATTTACATAGATACATGTGAGCAGTAGAAAGTAAGAATAGCTCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226217812 125 - 229942017 ----aaaaaaaaaaaaaaagaatcaaacaaaaTAGAAAAGCAATGAAATGTTTTAAGGAAATGACT----CTTAAAAGACTTAAGAAAATTTACGTAGATACACGTGAGCAGTAGAAAGTAAGAATAGCTCAG i ponAbe2.chr1 C 0 I 476 s nomLeu3.chr5 140108957 133 - 143122389 aaaaaaaaaaaaaaaaagagaaTCAAACAAAATAGAAAAGCAATGGAGTGTTTTAAAGAAATGACTCTTACTTAAAAGACTTAAGAAAATGTACGTAGATACATGTGAGCAGTAGAAAGTAAGAATACTTCAG i nomLeu3.chr5 I 3 C 0 s rheMac3.chr1 16826777 131 - 229590362 aaaaaaaaaaaaaaaaaAAGAATCAAACAAAATAGAAAAGCAATGAAATGTTTTAAAGAAATGATTCTTACTTAAAAGACTTAAGAAAATTTATGTAGATACATGTGAGCAGTAGAAA--AAGAATAGCTCAG i rheMac3.chr1 I 244 C 0 s macFas5.chr1 223587146 131 - 227556264 aaaaaaaaaaaaaaaaaaagaaTCAAACAAACTAGAAAAGCAATGAAATGTTTTAAAGAAATGATTCTTACTTAAAAGACTTAAGAAAATTTATGTAGATACATGTGAGCAGTAGAAA--AAGAATAGCTCAG i macFas5.chr1 I 4 C 0 s papAnu2.chr1 16638161 128 - 220367699 ---aaaaaaaaaaaaaaaagaatcaaacaaaatagaaaagcaatgaaatgttttaaagaaatgattcttacttaaaatacttaagaaaatttATGTAGATACATGTGAGCAGTAGAAA--AAGAATAGCTCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82438406 125 + 85787240 aaaaaaaaaaaaaaaaaaaaaa------aagatagaaaagaaaTGAAATGTTTTAAAGAAATGATTCTTACTTAAAAGACTTAAGAAAATTTATGTAGGTGCATGTGAGCAGTAGAAA--AAGAATAGCTCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14118835 120 - 49578535 --aaaaaaacaacaaaaaacaa-----------agaaaaGCAATTAAATTTTTTGAAGAAATTACTATTACTTAAAAGACTTAAGAGGATTTAAGTAGATGAGTGTGAGCAGTAGAGAGTAAGAGTGGCTCAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178713033 505 + 195471971 I e canFam3.chr7 36290130 271 + 80974532 I a score=2179830.000000 s hg38.chr1_KI270759v1_alt 110717 768 + 425601 atttatttcacaaacatgttttgagcatctttgtgtgccagccattgtattgaccttggtatacagtggt-----gagcaaaccagccttagacctagagacctggggcttttgtgtagtgggggaaaatgacttactattaaatgcatgatatgaaccgaagtggagatactgagggaaaagattgaggctctgtaaaagcatccagcagaggaagcataggctggaagaaggcttctcggaggaagtgaggcttgagcttacatctgcaggaaaagtgggagcattccatatggagagcaaaggccccacggcagaaggagcaggaggtgtgtttgaggaccttgcccgaggctggagccctggagtgtGAAACTGA-GGGGGAGGTAAATTAGCAGTTCCTGTAGCCAAATCCTGGTCTGTTATTTCTGAAAGTCTGTCATCTCTGAAGAGGATACTGGGCATAAATACAAATGAGAACATGATCTTTTAGGTGGTG-AGAGTCTATAGAGCAGGCATTTGGAGGGATGCCCTCTCCCCATTGTGGAACTAGCAGAACAAAATCTAAAGAATGCACAAAAGAAACC-AAAAAATGAGCTGTTAGGTTCTAAGGAGGGAGGGAGTGTGATGGAAAGCA--CACCATGAGAAATAAGGACATGGACCTGCCCCCG---------CCCCATCATGACACTGGCTGTGTCTGAAAAATGGAGCAGGAAAGGCAGCGTGACTAGGAAAATGTGCAGTTTTAATTTTACATAATATTTGTTTTTTTTTAG s panTro4.chr1 224860417 764 + 228333871 atttattccacaaacatgttttgagcatctttatgtgccagccattgtattgaccttggtatacagtgat-----gagcaaaccagccgtagacctagagacctggggcttttgtgtagtgggggaaaatgacttactattaaatgcatgatatgaactgaagtagagatactgagggaaaagattgaggctctgtaaaagcatccagcagaggaagcataggctggaagaaggcttctcggaggaagtgaggcttgagcttacatctgcaggaaaagtgggagcattccatatggagagcaaaggccccatggcagaaggagcaggaggtgtgtttgaggaccttgcccgaggctggagccctggagtgtGAAACTGA-GGGGGAGGTAAATTAGCAGTTCCTGTAGCCAAATCCTGGTCTGTTATTTCTGAAAGTCTGTCATCTCTGAAGAGGATACTGGGCATAAATACAAATGAGAACATGATCTTTTAGGTGGTG-AGAGTCTATAGAGCAGGCATTTGGAGGGATGCCCTCTCCCCATCGTGGAACTAGCAGAACAAAATCTGAAGAATGCACAAAAGAAACC-AAAAAACGAGCTGTTAGGTTCTAA----GGAGGGAGTGTGATGGAAAGCA--CACCATGAGAAATAAGGACATGGACCTGCCCCCG---------CCCCAtcatgacactggctgtgtctgaaaaatggagcaggaaaggcagcgtgactaggaaaatgtgcagttttaattttacataatatttggtttcttttag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226218413 762 - 229942017 atttattccacaaacatg-tttgagcatctttgtgtgccagtcattgtattgaccttggtatacagtggt-----gagcaaaccagccctagacctagagacctggggcttttgtgtggtgggagaaaatggcttactattaaatgcatgatatgaaccgaagcggagatactgagggaaaagattgaggctctgtaaaagcatccagcagaggaagcataggctggaagaaggcttctcggaggaagtgaggcttgagcttacatctgcaggaaaagtgggagcattccatatggagagcaaaggcctcacggctgaaggagcaggaggtgtgtttgaggaccttgcccgaggctggagccctgt-gtgtgAAACTGA-GTGGGAGGTAAATTAGCAGTTGCTGTAGCCAAATCCTGGTCTGTTATTTCTGAAAGTCTGTAATCTCTGACGAGCATACT-AGCATAAATAC-AATGAG-ACATGATCTTTTA-GTGGTGAAGAGTCTATAGAGTAGGCATTTGGAGGGATGCCCTCTCCGCATTGTGGAACCAGCAG-ACAAAATCTAAAGAATGCACAAAATAAACC-AAAAAATGAGCTGTCAGGTTCTAAGGAGGGAGGGAGTGTGATGGAAAGCA--CACCAGGAGAAATAAGAAGATGGACCTGCCCCCG---------CCCCGTCGTGACACTGGCTGTGTCTGAAAAATGGAGCATGAAAGGCAGCGTGATTAGGAAAATGTGCAGTTTTAATTTTACATAATATTTGGTTTCTTTTAG i ponAbe2.chr1 I 476 C 0 s nomLeu3.chr5 140109090 768 - 143122389 atttattccacagacatgttttgagcatctttgtgtgccagtcattgtattgaccttggtatacagtggt-----gagcaaaccagccctagacctagagacctggggcttttgtgtagtgggagaaaatgacttactattaaatgcatgatatgaaccaaagcggagatactgagggaaaagattgaggctctgtaaaagcatccatcagaggaagcataggatggaagaaggcttctcggaggaggtgaggcttgagcttacatctgcaggaaaagtgggagcattccatatggagagcaaaggctccacggcagaaggagcaagaggcgtgtttgaggaccttgcctgaggctggagccctggagtgtGAAACTGA-GGGGGAGGTAAATTAGCAGTTGCTGTAGCCAAATCCTGGTCTATTATTTCTGAAAGTCTGTAATCTCTGAAGAGGATACTAGGCATAAATACAAATGAGAACATGACCTTTTAGGTGGTG-AGAGTCTATTGAGTAGGCATTTGGAGGGATGCCCTCTCACCACTGTGGAACCAGCAGAACAAAATCTAAAGAATGCACAAAATAAACC-AAAAAATGAGCTGTCAGGTTCTAAGGAGGGAGGGAGTGTGATAGAAAGCA--CACCATAAGAAATAAGAACATGGACCTGCCCCCG---------CCCCGtcatgacactggctgtgtctgaaaaatggagcaggaaaggcagcgtgactaggaaaatgtgcagttttaattttacataatatttggtttcttttag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16826908 776 - 229590362 atttattccacaaacatgttttgagcatctttgtgtgccagccgttgcactgaccttggtatacagtgatatacagagcaaaccagccctagacctagagacctggggcttttgtgtagtgggagaaaatgacttactaataaatgcataatatgaaccaaagcggagatgctgagggaagagattgaggtgctgtaaaagcatccagccgaggaagcatgggctggaagaaggcttctcggaggaagtgaggcttgagcttacatctgcaggaaaagtaggagtgtttcacatggagggcaaaggccccacagcggaaggagcaggaggtgggtttgaggaccttgccggaggctggagccctggagtgtgagactga-gggcgaggtaaattagcagttgctgtagccagaTCATGGCCTGTTATTTCTGAAAGTCTGTAATCTCTGAAGAGGATACTAGGCATAAATACAAATGAGAACATGATCTTTTAGGTGGTG-AGAGTCTATAGAGTAGGCATTTGGAGGGATGCCGTCTCCCCATTGTGGAACCAGCAGAACAAAATCTAAAGAATGCACAAAAGAAACCAAAAAAATGAGCTGTCAGGTTCTAAGGAGGGAGAGAGTGTGATGGGAAGCACTCACCATGAAAAATAAGAACATGGACCTGCCCCCG---------CCCTGTCGTgatactggctgtgtctgaaacatggggcaggaaaggcagcgtgactaggaagatgtgcaattttaattttacatactatttggtttctttgag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223587277 776 - 227556264 atttattccacaaacatgttttgagcatctttgtgtgccagccgttgcactgaccttggtatacagtgatatacagagcaaaccagccctagacctagagacctggggcttttgtgtagtgggagaaaatgacttactaataaatgcataatatgaaccaaagcggagatgctgagggaggagattgaggtgctgtaaaagcatccagccgaggaagcatgggctggaagaaggcttctcggaggaagtgaggcttgagcttacatctgcaggaaaagtaggagtgtttcacatggagggcaaaggccccacggcggaaggagcaggaggtgggtttgaggaccttgccggaggctggagccctggagtgtgagactga-gggcgaggtaaattagcagttgctgtagcCAGATCATGGCCTGTTATTTCTGAAAGTCTGTAATCTCTGAAGAGGATACTAGGCATAAATACAAATGAGAACATGATCTTTTAGGTGGTG-AGAGTCTATAGAGTAGTCATTTGGAGGGATGCCGTCTCCCCATTGTGGAACCAGCAGAACAAAATCTAAAGAATGCACAAAAGAAACCAAAAAAATGAGCTGTCAGGTTCTAAGGAGGGAGAGAGTGTGATGGGAAGCACTCACCATGAAAAATAAGAACATGGACCTGCCCCCG---------CCCTGTCGTGATACTGGCTGTGTCTGAAACATGGGGCAGGAAAGGCAGCGTGACTAGGAAGATGTGCAATTTTAATTTTACATACTATTTGGTTTCTTTGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16638289 776 - 220367699 ATTTATTCCACAAACATGTTTTGAGCATCTTTGTGTGCCAGCCGTTGCACTGACCTTGGTATACAGTGATATACAGAGCAAACCAGCCCTAGACCTAGAGACCTGGGGCTTTTGTGTAGTGGGAGAAAATGACTTACTAATAAATGCATGATATGAACCAAAGTGGAGATGCTGAGGGAAGAGATTGAGGCGCTGTAAAAGCATCCAGCCGAGGAAGCATGGGCTGGAAGAAGGCTTCTCGGAGGAAGTGAGGCTTGAGCTTACATCTGCAGGAAAAGTAGGAGCGTTTCACATGGAGGGCAAAGGCCCCACGGCGGAAGGAGCAGGAGGTGGGTTTGAGGACCTTGCCGGAGGCTGGAGCCCTGGAGTGTGAGACTGA-GGGCGAGGTAAATTAGCAGTTGCTGTAGCCAAATCATGGCCTGTTATTTCTGAAAGTCTGTAATCTCTGAAGAGGATACTAGGCATaaatacaaatgagaacatgATCTTTTAGGTGGTG-AGAGTCTATAGAGTAGGCATTTGGAGGGATGCTGTCTCCCCATTGTGGAACCAGCAGAACAAAATCTAAAGAATGcacaaaagaaaccaaaaaaatgagCTGTCAGGTTCTAAGGAGGGAGAGAGTGTGATGGGAAGCACACACCATGAGAAATAAGAACATGGACCTGCCCCCG---------CCCTGTCGTGATACTGGCTGTGTCTGAAACATGGGGCAGGAAAGGCAGCGTGACTAGGAAGATgtgcaattttaattttacatactATTTGGtttctttgag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82438531 776 + 85787240 atttattccacaaacatgttttgagcatctttgtgtgccagccgttgcattgaccttggtatacagtgatatacagagcaaaccagccctagacctagagacctggggcttttgtgtagtgggagaaaatgacttactaataaatgcatgatatgaaccaaagcggagatgctgagggaaaagattgaggcgctgtaaaagcatccagccgaggaagcactggctggaagaaggcttctcagaggaagtgaggcttgagcttacatctgcaggaaaagtaggagcgtttcacatggagagcaagggcaccatggcggaaggagcaggaggtgtgtttgaggaccttgccggaggctggagccctggagtgtGAGACTGA-GGGCGAGGTAAATTAGCAGTTGCTGTAGCCAAATCATGGCCTGTTATTTCTGAAAGTCTGTAATCTCTGAAGAGGATGCTAGGCACAAATACAAATGAGAACATGATCTCTTAGGTGGTG-AGAGTCTATAGAGTAGGCATTTGGAGGGATGCCGTCTCCCCATTGTGGAACCAGCAGAACAAAATCTAAAGAATGCACAAAAGAAACCAAAAAAATGAGCTGTCAGGTTCTAAGGAGGGAGAGAGTGTGATGGGAAGCACACACCATGAGAAATAAGAACATGGACCTGCCCCTG---------CCCTGTCGTgatactggctgtgtctgaaaaatggagcaggaaaggcagcgtgactaggaaaatgtgcaattttaattttacgtactatttggtttcttttag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14118955 722 - 49578535 AGttattccacagacatgttctgagcgtcttt-tgtgccagccgtggtactgaccttggtacacagtggt-----gagcaaactagccctag-cctgtcgacttggggctttcctgtagtgggagaaaatgacttactgttaaatgcatggtatgaaccaaagcggagatactgagggagaagactgaggccctgtaggagcatccggcagaggaagcacagcctggaagaaggcttctctgaggaagtcatgcttgagcgtggatctgcaggaaaagtagga-cattccacatggagagcaaaggcctcgtggcagaaggagcccaagg-gtgtttgaggacctcgctgggggctgaagccctggagtgtgaaactgaggggggaggtcaatgAGCAGTTGCTGTAGCCACAGCGTGTTCTGTTATTTCTGAGAGTCTGAAATCTCTGAAGAGGATACTAGGCATAAATGCTAATGAGAACATGATCTTTCAGGTGGTG---AGTCGATAGAGAAGGCGTTTGGGGGGATGCCCTCTCCTCATTGCGGATCTACCAGAACAAAATCTAAAGAATACACAAAAGAAACC-GAACAGTGAGCTGTCAGGTTCTGAGGAGGGAGGGCGCGTGAT------------------------AGAACACGGACCTGTTCCCGCATCCCCACCCCAGTCCTCATACTGGCTGT----------------------------GCGACTAGGGACATGCGCAATTTTTATTTTACATAATATTCGGTTTCTTTTGG i calJac3.chr19 C 0 C 0 e mm10.chr1 178713033 505 + 195471971 I e canFam3.chr7 36290130 271 + 80974532 I a score=1251646.000000 s hg38.chr1_KI270759v1_alt 111485 394 + 425601 AAAATATTTTCTAAGATAAAAAATGCTAACATTTGTGAATAGTGGTAGTGGA--TACATGTGTATGTTTTA----TTATTGGA---TTTTTTTCTATATATCAC-ATTTTTTTAATTAGAAG-GGGAAGAC-----TTTTTTTTTTCTTAAATtagaaga-ggggcagttaaaggaaggaggtaggtgctaggaatggtttaagagtcagggtcctattcctagatacaaattggcttgggcaaattgcttctctggtcttcaggtgt-cttatctaaggagaagagttttgaagatgatgatgttggaaatcccttctagctctagaacgttctgtgatcctga-ttTTTAAAAACAATTGATGATTGAATAGTTCTATTTATAGGCTTGGGAATTTGGTGTCTCATGCTCA s panTro4.chr1 224861181 393 + 228333871 aaaatattttctaagataaaaaatgctaacatttgtgaatagtggtagtgga--tacatgtgtatgtttta----ttattgga---tttttttctatatatcac-atttttttaattAGAAG-GGGAAGAC------TTTTTTTTCCTTAAATTAGAAGA-GGGGCAGTTAAAGGAAGGAGGTAGGTGCTAGGAATGGTTTAGGAGTCAGGGTCCTATTCCTAGATACAAATTGGcttgggcaaattgcttctctggtcttcaggtgt-cttatctaaggagaagagttttgaagatgatgacgttggaaatcccttctagctctagaacgttctgtgatcctga-ttTTTAAAAACAATTGATGATTGAATAGTTCTATTTATAGGCTTGGGAATTTGGTGTCTCATGCTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226219175 399 - 229942017 AAAATATTTTCTAAGATAAAAAATGCTAACATTTGTGAATAGTGGTAGTGGA--TACATGTATATGTTTTA----TTATTTGA---TTTTTTTCTATATATCAC-ATTTTTTTAATTAGAAG-GGGAAGACttttttttttttttttttaaattaGAAGA-GGGGCAGTTAGAGGAAGGAGGTAGGTGCTAGAAATGGTTTAAGAGTCAGGGTCCTATTCCTAGATACAAATTGGcttgggcaaattgcttctctggtcttcaggtgt-cttatctaaggagaagagttttgaagatgatgatgttggaaatcccttctagctgtagaacattctgtgatcctga-ttTTAAAAAACAATTGATGATTGAATAGTTCTATTTATAGGCTTGGGAATTTGGTGTCTCATGCTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140109858 389 - 143122389 aaaatattttctaagataaaaaatgctaacatttgtgaatagtggtagtgga--tacacgtgtgtgtttta----ttatttga---ttttttcctatatatCAC-ATTTGTTTAATTAGAAG-GGGAAGAC-----TTTTTTTTTTTTTTAATTAGAAGA-GGGGCAGTTAGAGGAAGGAGGCAGGTGCTAGAAATGGTTTAAGAGTCAGGGTCCTATTCCTAGATACAAATTGGcttgggcaaatcgcttctctggtcttcaggtgt-cttatctaaggagaagagttttgaagatgatgatgttggaaatcccttctagctctagaacattctgtgatcctga-ttTTTAAAAACCATTGATGATT-----GTTCTATTTATAGGCTTGGGAATTCGGTGTCTCATACTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16827684 396 - 229590362 aaaatattttctaaggtaaaaaatgctaacatttgtgaatggtggtagtgga--tacatgtgtatgtttta----ttgtttga-tttttttttctatatatcac-attt-tttaattAGAAG-GGGAAGAC-----TTTTTTTTTTTTTAAATTAGAAGAGGGGGCAGTTAGAGGAAGGAGGTAGGTGCTAGAAATGGTTTAGGAGTCAGGGTACTGCTCCTAGATACAGATTGGcttgggcaaatcgcttctctggtcttcaggtgt-cttatctaaggagaagagttttgacgatgatgatgttggaaatctcttctagctctagaacattctgtgatcctaA-TTTTTGAAAACAGTTGATGATTGAATAGTTCTATTTATAGCCTTGGGAATTCAGTGTCTCATGCCCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223588053 398 - 227556264 AAAATATTTTCTAAGGTAAAAAATGCTAACATTTGTGAATGGTGGTAGTGGA--TACATGTGtatgtttta----ttgtttgattttttttttctatatatcac-attt-tttaattAGAAG-GGGAAGAC---TTTTTTTTTTTTTTTAAATTAGAAGA-GGGGCAGTTAGAGGAAGGAGGTAGGTGCTAGAAATGGTTTAGGAGTCAGGGTACTGCTCCTAGATACAGATTGGcttgggcaaatcgcttctctggtcttcaggtgt-cttatctaaggagaagagttttgacgatgatgatgttggaaatctcttctagctctagaacattctgtgatcctaA-TTTTTGAAAACAGTTGATGATTGAATAGTTCTATTTATAGCCTTGGGAATTCAGTGTCTCATGCCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16639065 397 - 220367699 aaaatattttctaagataaaaaatgctaacatttgTGAATGGTGGTAGTGGA--TACATGTGTATgtttta----ttgtttga-tttttttttctatatatcac-attt-tttaattagaag-gggaagac---ttttttttttttttttaattagaaga-gGGGCAGTTAGAGGAAGGAGGTAGGTGCTAGAAATGGTTTAGGAGTCAGGGTGCTGCTCCTAGATACAGATTGGCTTGGGCAAATCGCTTCTCTGGTCTTCAGGTGT-CTTATCTAAGGAGAAGAGTTTTGACGATGATGATGTTGGAAATCTCTTCTAGCTCTAGAACATTCTGTGATCctaa-tttttgaaaacaattgATGATTGAATAGTTCTATTTATAGCCTTGGGAATTCAGTGTCTCATGCCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82439307 392 + 85787240 aaaatattttctaagataaaaaatgctaacgtttgtgaatcgtggtagtgga--tacatgtgtatgtttta----ttgtttga--ttttttttctatatatcac-attt-tttaattAGAAG-GGGAAGAT-------TTTTTTTGTTTTAGTTAGAAGA-GGGGCAGTTAGAGGAAGGAGGTAGGTGCTAGAAATGGTTTAGGAGTCACGGTCCTACTCCTAGATACAAATTGGcttgggcaaattgcttctctggtcttcaggtgt-cttatctaaggggaagagttctgaagatgatgatgttggaaatctcttctagctctagaacattctgtgatcctaA-TTTTTGAAAACAATCGATGATTGAATAGTTCTATTCATAGGCTTGGGAATTCAGTGTCTCATGCCCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14119677 393 - 49578535 AAAATATTTTCTCAGACAAAAAATGCTAACATTTGTGAATGGTGGCAGTGGA--TACACGTGTATGTTTTA----TTATTTGA---TTTTTTTCTGTATATTACAATTTTTTTGATTAGAA--GGGAAGAC-------TCTTCTTTTTTTAATTAGAAGA-TGGGTAGGAAGAGGAAGGAAGCAGGTGCTAGGAATGGTTTAAGAGTCAGGGTCCTATTCCTAGATACAGAttggctcaggcacatcacttctctggtcttctgatgc-cttttctaaggagaagaattttgaagacgatgatgttggaaatagcttctgcctctaaaacattctgtgatgctaATTTTTTAAAAACAGTTGATTATTGAATAATTCTATTTATAGGCTTGGGAATTCAGTGTCTCATGCCCA i calJac3.chr19 C 0 I 314 s canFam3.chr7 36290401 368 + 80974532 aaaatattttCTAAGT---AAAATGTTAACATTTGTTGATTATGGTACTGGATCTGCCTGTATGTGTTTTACCCTTTTTTTTA---TTTCTTCTGCTTAAACAT-TTTT-TTTAATTAGAGGAGGGAAGAA----------------------GGGGAGAGGGGGCAG-----GGAGCAAAGGAGGGTTTAGCTCTGGCCTAAGAGTCAGGGTCGTGTTCTCAGATTCCCATT------AGTGAAtcacttctgtgctcct---gtgtccttactgaagaaaaggagtattgaagacaatgatcttggcagttccttctagctctaagacattctgtgtttctga-ttTCTAAGAGCAATCGATGATTGAATCATTTTACTTGCAGGTTTGGGAATTGAGTGGACTGTGTCCG i canFam3.chr7 I 271 C 0 e mm10.chr1 178713033 505 + 195471971 I a score=421718.000000 s hg38.chr1_KI270759v1_alt 111879 130 + 425601 CTAATCCCTGA----------TTCTTTAAAATTAGGAGAAACAATCTTGCTTGGCACAAGATAGCCA-ATAGCTTTCTAGTCAGGAAGCTCGTGCATTGAAATTCATTTGCCCAGAGACATTTTCAAAAGCTGTGAACCCA s panTro4.chr1 224861574 130 + 228333871 CTAATCCCTGA----------TTCTTTAAAATTAAGAGAAACAATCTTGCTTGGCACAAGGTAGCCA-ATAGCTCTCTAGTCAGGAAGCTCGTGCATTGAAATTCATTTGCCCAGAGACATTTTCAAAAGCTGTGAACCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226219574 130 - 229942017 CTAATCCCGGA----------TTCTTTAAAATTAAGAGAAGCAATCTTGCTTGGCACAAGATAGCCA-ATAGCTCTCTAGTCAGGAAGCTCGTGCATTGAAATTCATTTGCCCAGAGACATTTTCAAAAGCTGTGAACCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140110247 130 - 143122389 CTAACCCCGGA----------GTCTTTAAAATTAAGAGAAGCAATCTTGCTTGGCACAAGACAGCCA-ATAGCTCTCTAGTCAGGAAGCTCGTGCATTGAAATTCATTTGCCCAGAGACATCTTCGAAGGCTGTGAACCCA i nomLeu3.chr5 C 0 I 1036 s rheMac3.chr1 16828080 130 - 229590362 CTAATCCCCGA----------TTCTTTAAAAGTAAGAGAAACAATCTTGCTTGGCACAAGACAGCCA-GTAGCTCTCTAGTCAGGAAGCTCGTGCGTTGAAATTCATCTGCCTGGTGACATTTTCGAAAGCTGTGAACCCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223588451 130 - 227556264 CTAATCCCCGA----------TTCTTTAAAAGTAAGAGAAACAATCTTGCTTGGCACAAGACAGCCA-GTAGCTCTCTAGTCAGGAAGCTCGTGCGTTGAAATTCATCTGCCTGGTGACATTTTCGAAAGCTGTGAACCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16639462 130 - 220367699 CTAATCCCCGA----------TTCTTTAAAAGTAAGAGAAACAATCTTGCTTGGCACAAGACAGCCA-GTAGCTCTCTAGTCAGGAAGCTCGTGCGTTGAAATTCATCTGCCTGGTGACATTTTCGAAAGCTGTGAACCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82439699 130 + 85787240 CTAATCCCCGA----------TTCTTTAAAAGTAAGAGAAACAATCTTGCTTGGCACAAGACAGCCA-GTAGCTCTCTAGTCAGGAAGCTGGTGCGTTGAAATTCATCTGCCTGGTGACATTTTCGAAAGCTGTGAACCCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14120384 130 - 49578535 cTAATCCCTGC----------CTCTTTAAAAGTAAGAGGAACCATTTTGCTTGTCACAGGATAACCA-ATAGCTCTCTAGTAAGGAAGCTCATGCATTGACATTCATCTGCTCAGAGACGTCTTCAAAAGCTGTGAACCCA i calJac3.chr19 I 314 C 0 s canFam3.chr7 36290769 137 + 80974532 CAAATTCCCACTTTTTTTTTTTTTTTTTTAAGTAAGAGATCTAGTCTTGCTTGGCA-AAGATAGCCACATATATCTTTA---AGGCAGACAGTGCACTGAAGCTCATTTGCTAAGGGGTATTTCTGAAAGCCATGAGCCCA i canFam3.chr7 C 0 C 0 e mm10.chr1 178713033 505 + 195471971 I a score=673385.000000 s hg38.chr1_KI270759v1_alt 112009 217 + 425601 CAGGTCGCTGACATCCCTTCTGGACCAGATGTGGGAATCTGGACCCACCCAGAAAGCTGTGCCTCTGTGTCAGGCATCCTGCCATTCACCACACGCGTTCCAGCGGCTGCTCTCTGGCTTTGCAGGGCACCTGCAGGACAGTTTGTG-----CATAAG-----GAATCCCTTCCCTCCAAATTTTAGATGAGAAATATGGTAATGAA-AGGAAATAACCCAGGCAGAG s panTro4.chr1 224861704 217 + 228333871 CAGGTCACTGACATCCCTTCTGGACCAGATGTGGGAATCTGGACCCACCCAGAAAGCTGTGCCTCTGTGTCAGGCATCCTGCCATTCACCACACGCGTTCCAGCGGCTGCTCTCTGGCTTTGCAGGGCACCTGCAGGACAGTTTGTG-----CATAAG-----GAATCCCTTCCCTCCAAATTTTAGATGAGAAATACGGTAATGAA-AGGAAATAACCCAGGCAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226219704 217 - 229942017 CAGGTTGCTGACATCCCTTCTGGACCAGATGTGGGAATCTGGACCCACCTGGAAAGCTGTACCTCTGTGTCAGGCATCCTGCCATTCACCACACGCGTTCCAGCGGCTGCTCTCTGGCTTTGCAGGGCACCTGCAGGACAGTTTGTG-----CATAAG-----GAATCCCTTCCCTCCAAATTTTAGATGAGAAATATGGTAATGAA-ACGAAATAACCCACGCAGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140111413 217 - 143122389 CAGGTTGCTCACATCCCTTCTGGACCAGATGTGGGAATCTGGACCCACCCAGAAAGCTGTGCCTCTGTGTCAGGCATCCTGCCATTCACCACACACGTTCCAGCGGCTTCTTTCTGGCTTTGCAGGGCACCTGCAGGACAGTTTGTG-----CATAAG-----GAATCCCTTCCTTCCAAATTTTAGATGAGAAATACGGTAATGAA-AGGAAATAACCCAGGCAGGG i nomLeu3.chr5 I 1036 C 0 s rheMac3.chr1 16828210 217 - 229590362 CAGGTTGCTCACATCCCTTCTGGAGCAGATGTGGGAATCTGGACCCACCCAGAAAGCTGTGACTGTGTGTCAGGCATCCTGCCATTCGCCACATGCGTTCCAGCGGCTTCTTTCTGGCTTTGCAGGGCACCTGCAAGACAGTTTATG-----CATAAG-----GAATCCCTTCCCTCCAAATTTTAGATGAGAAATACAGTAACGAA-AGGAAACAACCCAAGCAGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223588581 217 - 227556264 CAGGTTGCTCACATCCCTTCTGGAGCAGATGTGGGAATCTGGACCCACCCAGAAAGCTGTGACTGTGTGTCAGGCATCCTGCCATTCGCCACATGCGTTCCAGCAGCTTCTTTCTGGCTTTGCAGGGCACCTGCAAGACAGTTTATG-----CATAAG-----GAATCCCTTCCCTCCAAATTTTAGATGAGAAATACAGTAACGAA-AGGAAACAACCCAAGCAGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16639592 217 - 220367699 CAGGTTGCTCACATCCCTTCTGGAGCAGATGTGGGACTCTGGACCCACCCAGAAAGCTGTGACTGTGCGTCAGGCATCCTGCCATTCGCCACATGCGTTCCAGCGGCTTCTCTCTGGCTTTGCAGGGCACCTGCAAGACAGTTTATG-----CAGAAG-----GAATCCCTTCCCTCCAAATTTTAGATGAGAAATACAGTAACGAA-AGGAAACAACCCAAGCAGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82439829 216 + 85787240 CAGGTTGCTCACATCCCTTCTGGAGCGGATGTGGGAATCTGGACCCACCCAGAAAGCTATGCCTCTGTGTCAGGCATCCTGCC-TTCGCCACATGTGTTCCAGTGGCTTCTCTCTGGCTTTGCAGGGCACCTGCAAGACAGTTTATG-----CATAAG-----GAATCCCTTCCCTCCAAATTTTAGATGAGAAGCACAGTAACGAA-AGGAAACAACCCAAGCAGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14120514 199 - 49578535 TGGGCTGTTCACATGCATTCTGGACCAGACATGGGTATCTACATCCACCCAGAACGCCGTGCCTCTGTGTTAGGCATCTTGCCACTCACCACACGCCTTCCCGCGGCTGCTCTCTGGCTTTGCAGAGCACCTACC----------------------------GAGTCCCTTCCCTCCAAATTTTAGATAAGAAATACAGCAATGAA-AGCAAACAACCCAGGCAGAC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36290906 206 + 80974532 CTGGATGCTTGCATTCTTTCTGGGCCAGACTCAAGAATCTGGAATCACCTAGAAATCTGTGCCTCT-------------CACCATTCACCACCCATTTCCTAGTGGCTTCTCTGCGGGTTTGCAAGTTACC---------GTTCATGTGAGACACAAGTGTCCCATTCCCGTTCTTCCAAAATTCTGATGAGAAATACAGAAATCAACAGGAAATACCACAGACAGAT i canFam3.chr7 C 0 I 76 e mm10.chr1 178713033 505 + 195471971 I a score=146546.000000 s hg38.chr1_KI270759v1_alt 112226 39 + 425601 TGGCTTGTTTCACATGTCACGGTGTGTC-AAAATCAGATG s panTro4.chr1 224861921 39 + 228333871 TGGCTTGTTTCACATGTCACGGTGTGTC-AAAATCAGATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226219921 39 - 229942017 TGGCTTGTTTCACATGTCACTGTGTGTC-AAAATCAGATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140111630 39 - 143122389 TGGCTTGTTTCACATGTCACTGTGTGTC-AAAATCAGATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16828427 40 - 229590362 TGGCTTGTTTCACATGTCACCATGTGTCAAAAATCAGATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223588798 40 - 227556264 TGGCTTGTTTCACATGTCACCATGTGTCAAAAATCAGATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16639809 40 - 220367699 TGGCTTGTTTCACATGTCACCATGTGTCAAAAATCAGATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82440045 40 + 85787240 TGGCTTGTTTCACATGTCACCGTGTGTCAAAAATCAGATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14120713 39 - 49578535 AGGCTGGTTTCACATGTCACCGTGTGTC-AAAATCAGAGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178713538 39 + 195471971 TGACTTCTCTCAGATGTCACTGTGAGTG-AAAACCAGGTG i mm10.chr1 I 505 C 0 s canFam3.chr7 36291188 39 + 80974532 TGACTTTCTTCAGATGTCTGTGTGTGCT-AAAACCAGTTG i canFam3.chr7 I 76 I 153 a score=219646.000000 s hg38.chr1_KI270759v1_alt 112265 91 + 425601 TATG-TCTTAGA-------------------------------------------------------------TTCTTGGGGGAAAAAAAAAGTTGTCGCATGAATTTGGGGGTTTTGTTTTGTCTTTGGACATGGTCCGGGA--G-GCATGATGC s panTro4.chr1 224861960 90 + 228333871 TATG-TCTTAGA-------------------------------------------------------------TTCTTGGGGG-AAAAAAAAGTTATCGCATGAATTTGGGGGTTTTGTTTTGTCTTTGGACACGGTCCGGGA--G-GCATGATGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226219960 87 - 229942017 TATGTTCTTAGA-------------------------------------------------------------TACTTCGGGA----AAAAACTACTCCCATGAATCTGGGGGTTTTGTTTTGCCCTCGGAC-TGCTCCGGGA--G-GCATGATGC i ponAbe2.chr1 C 0 I 662 s nomLeu3.chr5 140111669 90 - 143122389 TATG-TCTTAGA-------------------------------------------------------------TTCTTGGGGG-AAAAAAAAGCTGTCGCATGAATTTGGGGGTTTTGTTTTGTCTTTGGACATGGTCCGGGA--G-GCATGATGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16828467 86 - 229590362 TATG-TCTTAGA-------------------------------------------------------------TTCTTGGGGG-AAAAAAA----GTCCCATGAATTTGGGAGTTTTGTTTTGTCTTTGGACATGGTCCAGGA--G-GCATGATGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223588838 86 - 227556264 TATG-TCTTAGA-------------------------------------------------------------TTCTTGGGGG-AAAAAAA----GTCCCATGAATTTGGGAGTTTTGTTTTGTCTTTGGACATGGTCCAGGA--G-GCATGATGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16639849 86 - 220367699 TATG-TCTTAga-------------------------------------------------------------ttcttggggg-aaaaaaa----gtcccATGAATTtgggagttttgttttgtctttggaCATGGTCCAGGA--G-GCATGATGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82440085 90 + 85787240 TATG-TCTTAGA-------------------------------------------------------------TTCTTGGGGG-GAAAAAAAGTTGTCCCATGAATTTGGGGGTTTTGTTTTGTCTTTGGACATGGTCCAGGA--G-GCATGATGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14120752 92 - 49578535 TATG-TCTTAGA------------------------------------------------------CTGCAGCTTCTTG-----GAAAAAAATTTGTCCCATGAATTTGGGGGTTTTGTTTTGTGTTTGGACATTGTCCAGGA--G-GCATGTGG- i calJac3.chr19 C 0 C 0 s mm10.chr1 178713577 92 + 195471971 TGTG-CCTTCAA--------------------------------------------------------GGTGGCTTTGGATGG-AAATGAG----GTGTTGTGGATTTGCGAGTTTGGTTTTAGTCCTGGGTGTTGTCCAGGA--GAGCATAAGGC i mm10.chr1 C 0 C 0 s canFam3.chr7 36291380 144 + 80974532 tctc-tctcaaataaataataaaatctttaaagaTAAATAAATAAAACCAGATTATGTATGGTAGATTGTAGCTCCTTGATGA-AAAAAAC--------AATGGTGCTGGCCTATTGGGTGTGTTTTTGGACATTGTCGGGGGCTG-GCATCCTG- i canFam3.chr7 I 153 C 0 a score=280148.000000 s hg38.chr1_KI270759v1_alt 112356 129 + 425601 GCGCCCTGGAGCTTCATCGATGCTGTTGAGT-GGGGATGACGGT-GTGCATCGCCACATCCTCAGCTTTCCAGT------TGTTTCAGCTGCGCCCTCCAAGCT---GCCCT-GTTCCGCGGGGACAATAGCAGCCAGTGG s panTro4.chr1 224862050 129 + 228333871 GCCCCCTGGAGCTTCATCGATGCTGTTGAGT-GGGGACGACGGT-GTGCATCGCCACATCCTCAGCTTTCCAGT------TGTTTCAGCTGCGCCCTCCAAGCT---GCCCT-GTTCCGCGGGGACAGTAGCAGCCAGTGG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140111759 131 - 143122389 GTCCCCTGGAGCTTCATCGATACTATTGAGTGGGGGACGACGGT-GTGCATCGTCAGGTCCTCAGCTTTCCAGC------TGTTTCAGCTGCGCCCTCCAGGCT---GCCCCGGTTCCGCGGGGACAGTAGCAGCCAGTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16828553 131 - 229590362 ACCCCCTGGAGCTTCATCAATACTATTGAGT-GGGGATGACGGT-GTGCATCG-CGTGTCCTCAGCTTTCCAGT------TGTCTCAGCTGCACCCTCCAGGCTGGGGCCCC-GTTCCGCAGGGACAGTAGCAGCCAGTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223588924 131 - 227556264 ACCCCCTGGAGCTTCATCAATACTATTGAGT-GGGGATGACGGT-GTGCATCG-CGTGTCCTCAGCTTTCCAGT------TGTCTCAGCTGCACCCTCCAGGCTGGGGCCCC-GTTCCGCAGGGACAGTAGCAGCCAGTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16639935 131 - 220367699 ACCCCCTGGAGCTTCATCAATACTATTGAGT-GGGGATGACGGT-GTGCATCG-CGTGTCCTCAGCTTTCCAGT------TGTTTCAGCTGCACCCTCCAGGCCGGGGCCCC-GTTCCTCAGGGACAGTAGCAGCCAGTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82440175 129 + 85787240 ACCCCCTGGAGCTTCATCAGTACTATTGAGT-GGGGATGACGGT-GTGCATCATCGCGTCCTCAGCTTGCCAGT------TGTTTCAGCTGTGCCCTCCAGGCC---GCCCC-GTTCTGCGGGGACAGTAGCAGCCAGTGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14120844 135 - 49578535 GTCACCTGGAGCTTCATCAGTACCGCCGAGT-GGGGACGATGGTGGTGCACGGTCAAATCCTCAGCTTTCCAGTTCCATCTCTATCAGCGGCACCCTCCAGTCT---GCCC--ATTCCGCGGGGACGGTAGCAGCCGGTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178713669 94 + 195471971 ACCATCTGTGGCTTTAGCATTACTAGGTAGT-GGGGACAACAGT-GTGTGTGG-----------------CAGT------CCCTTCAATTG----------------TCCCC-TTT-----GGGATGGTGGCAGCTGTTGG i mm10.chr1 C 0 I 73 s canFam3.chr7 36291524 91 + 80974532 GAACACAGGGGCTTCATAAGTGCTTCTTAGT-GGTGACAGCAAT-GTG----------------------CAGA------CCT-----------CCTCC--------TCCTC-TTGCCTCTGGGACAGTGGCAGCTGGTCG i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226220047 662 - 229942017 I a score=32276.000000 s hg38.chr1_KI270759v1_alt 112485 15 + 425601 ACGGGAGCCCGCACC s panTro4.chr1 224862179 15 + 228333871 ACGGGAGCCCGCATC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140111890 15 - 143122389 AATGGAGCCCGCACC i nomLeu3.chr5 C 0 M 1090 s rheMac3.chr1 16828684 15 - 229590362 ATGGGAGCCCGCACC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223589055 15 - 227556264 ATGGGAGCCCGCACC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16640066 15 - 220367699 ACGGGAGCCCGCACC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82440304 15 + 85787240 ACGGGAGCCCGCACC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14120979 11 - 49578535 ATGGAAGCCCA---- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36291615 15 + 80974532 AGGGGAGCCCTAGCC i canFam3.chr7 C 0 C 0 e mm10.chr1 178713763 73 + 195471971 I e ponAbe2.chr1 226220047 662 - 229942017 I a score=102652.000000 s hg38.chr1_KI270759v1_alt 112500 63 + 425601 ACACAGCAGCAAAGGAAGCCGGAGGAGAGGCTCTGCGGGCTCTCTGCTCCGTCAGCA-GGAATG s panTro4.chr1 224862194 63 + 228333871 CCACAGCAGCAAAGGAAGCCAGAGGAGAGGCTCTGCGGGCTCTCTGCTCCGTCAGCA-GGAATG i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16828699 63 - 229590362 CCACAGCAGCAAAGGAAGCCCGAGGAGAGGCTCTGCACGCTCTCTGCTCAGTCAGCA-GGAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223589070 63 - 227556264 CCACAGCAGCAAAGGAAGCCCGAGGAGAGGCTCTGCAGGCTCTCTGCTCAGTCAGCA-GGAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16640081 63 - 220367699 CCACAGCAGCAAAGGAAGCCCGAGGAGAGGCTCTGCGGGCTCTCTGCTCAGTCAGCA-GGAATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82440319 62 + 85787240 CCACAGCAGC-AAGGAAGCCCGAGGAGAGGCTCTGCGGGCTCTCTGCTCAGTCAGCA-GGAATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14120990 42 - 49578535 ----------------------AGGAGAGGCCATGTGGGCTCTCCGCTGAGTCAGCAGGGAATG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36291630 62 + 80974532 CCACAGACACAGTGGAAGCTGGGGGAGAGGTGACGCAGGCCCCCTGCCCATGTAGCA-GCTCT- i canFam3.chr7 C 0 C 0 e mm10.chr1 178713763 73 + 195471971 I e nomLeu3.chr5 140111905 1090 - 143122389 M e ponAbe2.chr1 226220047 662 - 229942017 I a score=15100.000000 s hg38.chr1_KI270759v1_alt 112563 7 + 425601 TCCTCCG s panTro4.chr1 224862257 7 + 228333871 TCCTCCG i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16828762 7 - 229590362 TCCTCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223589133 7 - 227556264 TCCTCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16640144 7 - 220367699 TCCTCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82440381 7 + 85787240 TCCTCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14121032 7 - 49578535 TCCTTCG i calJac3.chr19 C 0 C 0 s mm10.chr1 178713836 7 + 195471971 TCCTCCA i mm10.chr1 I 73 C 0 s canFam3.chr7 36291692 7 + 80974532 TGCTGAG i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140111905 1090 - 143122389 M e ponAbe2.chr1 226220047 662 - 229942017 I a score=1542532.000000 s hg38.chr1_KI270759v1_alt 112570 537 + 425601 GGCCAGCAG----CTGCCTTTGCAGCCACCTCTCCA------GTTTCTGTCACTTGGGTCAAGTTTCCTTATAATGCGTTAAATGAATGAGAATAAGAAAGTGTGTGTTGGCAGAATTTCCGTTGAATAATGCCAAGGCTTTCCAAGTAAGAGCATGAATTTAAGCGGAGCAAAGTTCCCAGTCAATGGGATTCA---GAGT-AA-TGGCTATTCTGCTAATAATGAAAAGTAGAAATGTTTTTACTT--------TTAA---AGGTTCACAAATGGGCTACTCTTA-GGGCTCGCTGGCCTATTCAGTTACAAAGTGGAAACTGTTCCGGATCTTTGCTTTATTGCACTTGTATTTAGTAGGTGATTGGAAACATTTTCCACTTAGCATTTAAG-GGTTTGAATAGACTGGTGAC-TTTTT---TTCAACTAAAGT--TTCCTCTTTTTT-----------------------AAAAAACTGACATTTTTC-------------TTTTTTTGCAAGTAGACTGAAGATTTCAAGTAACAGGTTTTCCAAAT-----ACTTAGACTCTGCCTGCATAA------TTATTATATTTGCCGTGGGGATTAGCACTTTTCA s panTro4.chr1 224862264 537 + 228333871 GGCCAGCAG----CTGCCTTTGCAGCCTCCTCTCCA------GTTTCTGTCACTTGGGTCAAGTTTCCTTATAATGCGTTGAATGAATGAGAATAAGAAAGTGTGTGTTGGCAGAATTTCCGTTGAATAATGCCAAGGCTTTCCAAGTAAGAGCATGAATTTAAGCGGAGCAAAGTTCCCAGTCAATGGGACTCA---GAGT-AA-TGGCTATTCTGCTAATAATGAAAAGTACAAATGTTTTTACTT--------TTAA---AGGTTCACAAATGAGCTGCTCTTA-GGGCTCGCTGGCCTATTCAGTTACAAAGTGGAAACTGTTCCGGATCTTTGCTTTATTGCACTTGTATTTAGTAGGTGATTGGAAACATTTTCCACTTAGCATTTAAG-GGTTTGAATAGACTGGTGAC-TTTTT---TTCAACTAAAGT--TTCCTCTTTTTT-----------------------AAAAAACTGACATTTTTC-------------TTTTTTTGCAAGTAGACTGAAGATTTCAAGTAACAGGTTTTCCAAAT-----ACTTAGACTCTGCCTGCATAA------TTATTATATTTGCCGTGGGGATTAGCACTTTTCA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140113004 537 - 143122389 GGCCAGCAG----CTGCCTTTGCAGCCTCCTCTCCA------GTTTCTCTCACTTGGGTCAAGTTTCCTTACACTGCGTTGAATGAATGAGAATAAGAAAGTGTGTGTTGGCAGAATTTCCGTTGAATAATGCCAAGGCTTTCCAAGTAAGAGCATGAATTTAAGCGGAGCAAAGTTCCCAGTCAATGGGACTCA---GAGT-AA-TGGCTATTCTGCTAATAATGAAAAGTACAAATGTTTTTACTT--------TTAA---AGGTTCACAAATGGGCTGCTCTTA-GGGCTCACTGGCCTATTCAGTTACAAAGTGGAAACTGTTCCGGATCTTTGCTTTATTGCACTTGTATTTAGTAGGTGATTGGAAACGTTTTCCACTTAGCGTTTAAG-GGTTTGAATAGACTGGTGAC-TTTTT---TCCAACTAAAGT--TTCCTCTTTTTT-----------------------AAAAAACTAACATTTTTC-------------TTTTTTTGCAAGTAGACTGAAGATTTCAAGTAACAGGTTTTCCCAAT-----ACTTAAACTCTGCCTGCATAA------TTATTATATTTGCCGTGGGGATTAGCACTTTTCA i nomLeu3.chr5 M 1090 C 0 s rheMac3.chr1 16828769 539 - 229590362 GGCCAGCAG----CTGCCTTTGCAGCCTTGTCTCCA------GTTTCTCTCACTTGGGTCAAGTTTCCTTACAATGCGTTGAATGAATGAGAATAAGAAAGTGTGTGCTGGCAGAATTTCCGTTGAATAATGCCAAGGCTTTCCAAGTAAGAGCATGAATTTCAGTGGAGCAAAGTTCCCAGTCAATGGGACTCA---GAGT-AA-TGGCTATTCTGCTAATAATGAAAAGTACAAATGTTTTTACTT--------TTAA---AGGTTCACAAATGCGCTGCTCTTA-GGGCTCGCTGGCCTACTCAGTTACAAAGTGGAAACTGTTCCGGATCTTTGCTTTACTGCACTTGTATTTAGTAGGTGATTGGAAACATTTTCCACTTAGCATTTAAG-GGTTTGAATAGACTGGTGAC-TTTTT---TTGAACTAAAGT--TTCCTCTTTTTT----------------------TAAAAAACTAACATTTTTC------------TTTTTTTTGCAAGTAGACTGAAGATTTAAAGTAACAGGTTTTCCAAAT-----ACTTAGACTCTGCCTGCATAA------TTATTGTATTTGCCGTGTGGTTTAGCACTTTTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223589140 539 - 227556264 GGCCAGCAG----CTGCCTTTGCAGCCTTGTCTCCA------GTTTCTCTCACTTGGGTCAAGTTTCCTTACAATGCGTTGAATGAATGAGAATAAGAAAGTGTGTGCTGGCAGAATTTCCGTTGAATAATGCCAAGGCTTTCCAAGTAAGAGCATGAATTTCAGTGGAGCAAAGTTCCCAGTCAATGGGACTCA---GAGT-AA-TGGCTATTCTGCTAATAATGAAAAGTACAAATGTTTTTACTT--------TTAA---AGGTTCACAAATGCGCTGCTCTTA-GGGCTCGCTGGCCTACTCAGTTACAAAGTGGAAACTGTTCCGGATCTTTGCTTTACTGCACTTGTATTTAGTAGGTGATTGGAAACATTTTCCACTTAGCATTTAAG-GGTTTGAATAGACTGGTGAC-TTTTT---TTGAACTAAAGT--TTCCTCTTTTTT----------------------TAAAAAACTAACATTTTTC------------TTTTTTTTGCAAGTAGACTGAAGATTTAAAGTAACAGGTTTTCCAAAT-----ACTTAGACTCTGCCTGCATAA------TTATTGTATTTGCCGTGTGGTTTAGCACTTTTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16640151 539 - 220367699 GGCCAGCAG----CTGCCTTTGCAGCCTTGTCTCCA------GTTTCTCTCACTTGGGTCAAGTTTCCTTACAATGCGTTGAATGAATGAGAATAAGAAAGTGTGTGCTGGCAGAATTTCCGTTGAATAATGCCAAGGCTTTCCAAGTAAGAGCATGAATTTCAGTGGAGCAAAGTTCCCAGTCAATGGGACTCA---GAGT-AA-TGGCTACTCTGCTAATAATGAAAAGTacaaatgtttttactt--------ttaa---aggtTCACAAATGTGCTGCTTTTA-GGGCTCGCTGGCCTACTCAGTTACAAAGTGGAAACTGTTCCGGATCTTTGCTTTACTGTGCTTGTATTTAGTAGGTGATTGGAAACATTTTCCACTTAGCATTTAAG-GGTTTGAATAGACTGGTGAC-ttttt---ttgaactaaagt--ttcctctttttt----------------------aaaaaaactaacgtttttc------------ttttttttgcaagtAGACTGAAGATTTAAAGTAACAGGTTTTCCCAAT-----ACTTAGACTCTGCCTGCATAA------TTATTGTATTTGCCGTGTGGTTTAGCACTTttcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82440388 527 + 85787240 GGCCAGCAG----CTGCCTTTGCAGCCTTGTCTCCA------GTTTCTCTCACTTGGGTCAAGTTTCCTTACAATGCGTTGAATGAATGAGAATAAGAAAGTGTGTGCTGGCAGAGTTTCCGTTGAATAATGCCAAGGCTTTCCAAGTAAGAGCATGAATTTCAGCGGAGCAAAGTTCCCAGTCAATGGGACTCA---GAGT-AA-CGGCTATTCTGCTAATAATGAAAAGTACAAATGTTTTTACTT--------TTAA---AGGTTCACAGATGCGCTGCTCTTA-GGGCTTGCTGGCCTACTCAGTTACAAAGTGGAAACTGTTCCGGATCTTTGCTTTATTGCGCTTGTATTTAGTAGGTGATTGGAAACATTCTCCACTTAGCATTTAAG-GGTT------------TGAC-TTTTT---TTGAACTAAAGT--TTCCTCTTTTTT----------------------AAAAAAACTAACATTTTTC------------TTTTTTTTGCAAGTAGACTGCAGATTTAAAGGAACAGGTTTTCCAAAC-----ACTTAGACTCTGCCTGCATCA------TTATTGTATTTGCCGTGGGGTTTAGCACTTTTCC i chlSab2.chr25 C 0 I 326 s calJac3.chr19 14121039 560 - 49578535 GGCCAGCAG----CTGCCCTTGCAGCCTCCTCTCCAAGTGAGGTTTCTCTCACTTGGGTCAAGTTTCCTTACAATGCATTGAATGAATGAGAATAAGAAAGTGTGTGCTGGCAGAATTTCTGCTGAATAATGCCAAGGCTTTCCAAGTCAGAGCATGAATTTAAGCAG---AAAGTCCCCAGTCAAT-GGACTCG---GAGT-AA-TGGCTATTCTGCTAATCATGAAAAGTACAAATGCTTTTGCCT--------TTAA---AGGCTCACAAAAGGGCTGCTCTGACTGGCTCGCTGGCCTGCTCAGTTACAAACTGGAAACTACTCTGGATCTTTGCTTTATGGCATTTCTTTTTTGTCGGTGGTTAGAAACATTTTCCACTTAGCATTTAAG-GGTTTGAATAGACTGGTGACTTTTTT---TTGAACTAAAGT--TTCCTCTTTTCTTT-----------------TTTAAACAAAGtttttttttttttttttttttttttttttttGCAAGTAGACTGAAGATTTAAAGTCACAGGTTTTCCAAAT-----ATTGAGACTCTGCCTGCATGA------TTATTACGTTTGCTGTGGGGATTAACACTTTTCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178713843 529 + 195471971 GGCC---------TTCTCTGTGCTGCCTCCTCTCCA------GCTGCTGTGA-TGGGGTCACATTTGTTTCTAATGTGCAGAATGAA----AGTAAGAAAGTATAGGTTGGCAGAATCTCCACTGAATGATGCCGA-ACTTCCCAAGTTACAGCAGGAGTTTAAGC-----AAAGTTTCGATTCAACAGTATGCAATGGAGCAAA-TGGCTGCTCTGCTAAAACTGAGACGTATAAATGGTTTTACGTCCCTGGTGTTAGCCCAGGCTCCCTCATCTGC----CTCA-TGGCCAGCTACCTTGCTCAGTGACCAAGGAGAAA-GGCTCCTGCCCTGGGTTTTATTACACCCGTGTTTTATAAATGATAGG-CATATTTTCCACTTATCATTTAAG-AGT---AGCAGACCAAAGAT-CTTTTTGGTTTACCTGAAGTCATCCATCTTTTTGTT---------------TGTTTATTTCAACTAATGTGTTCC---------------CTTTTGGACGTAGATTAAAGTTTTAAAGTAACCACCTAGCCCACT-------TTAGACTTTTATCCCATAAAACACCGTATTATGTC--------AGATCAACATT----- i mm10.chr1 C 0 C 0 s canFam3.chr7 36291699 565 + 80974532 TGCAGGGAGTGGACTACTTCTGTTGCCTCCTCCCTG------GGCTCTCTTATGTGGGTCAGATTTCCTTATAACTGGATGAATGAATGAGAGTAAGAAAGTATGTGTTGGCAAAATTTCACCTGAA-AATGCCAAAGCTTTCCAAGTAAGGGCACGAATTTAAGC-------AGTTTCGAGTCAGTGGGGCTTA---GAGT-AACTGGCTATGCTGCTAATAATGAAAAGTACAAATGTTTTTATGT--------TCAA---AGGTTAACAAATGGGACTCTTTCACTGGTCTACTGGTCTGCTCAGTTACAAAGTGGAGACTGTTCCTGGTCTTTGCTTTATTGCACTTGTATTTGGCAGGCAATTAGAAACATTTTCCACTCAGCATTTAAGAAGTTTGAGCTGGCTGCAGACGCTTTT---TTAAACGAAAGt--ttctttatttcttttcttcttcttttccttctttTGTTAAACTAACAATTTTT------------TCCCTTTTGTAAGTGGACTAAAGTTTTAAAGTAGCTGGCTTTCCAAGTAGCACACTTAGACTTTGCCAGCGTAA------TTACTACATTCATCATG-GAATGAGCACTTTTCA i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226220047 662 - 229942017 I a score=18864.000000 s hg38.chr1_KI270759v1_alt 113107 6 + 425601 AAAGTG s panTro4.chr1 224862801 6 + 228333871 AAAGTA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140113541 6 - 143122389 AAAGTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16829308 6 - 229590362 AAAgtg i rheMac3.chr1 C 0 I 409 s macFas5.chr1 223589679 6 - 227556264 AAAgtg i macFas5.chr1 C 0 I 344 s papAnu2.chr1 16640690 6 - 220367699 aaagtg i papAnu2.chr1 C 0 I 331 s chlSab2.chr25 82441241 6 + 85787240 AAAGTA i chlSab2.chr25 I 326 C 0 s calJac3.chr19 14121599 6 - 49578535 AAAGTA i calJac3.chr19 C 0 C 0 s mm10.chr1 178714372 4 + 195471971 --AGTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36292264 6 + 80974532 AAAGTG i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226220047 662 - 229942017 I a score=391604.000000 s hg38.chr1_KI270759v1_alt 113113 130 + 425601 TATTTCTACACAACATCCTTGTTTTGCCCCAAAGTTTGATTCTTCACAGCTTATTACGTAGATTTAGGCAAAATGGACCGAGCTCCATCCACTAGAACTTCCATTATAAAGGCAATCATTTCGAATGAAA s panTro4.chr1 224862807 130 + 228333871 TATTTCTCCACAAGATCCTTGTTTTGCCCCAAAGTTTGATTCTTCACAGCTTATTATGTAGATTTAGGCAAAATGGACCGAGCTCCATCCACTAGAACTTCCATTATAAAGGCAATCATTTCAAATGAAA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140113547 130 - 143122389 TATTTCTACACAAGATCCTTGTTTTGCCCCTAAGTTTTATTCTTCACAGCTTATTATATAGATTTAGGCAAAATGGACTGAGCCCCATCCACTAGAACTTCCATTATAAAGGCAGTCATTTCAAATAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16829723 130 - 229590362 TATTTCTACATAAGATCCTTGTTTTGCCCCAAAGTTTGGTTCTTCACAGCTTATTATGTAGATTTAGGCAAAATGGACCCAGCTCCTTCCACTAGAACTTTCATTATAAAGGCAATCATTTCAAATAAAA i rheMac3.chr1 I 409 C 0 s macFas5.chr1 223590029 130 - 227556264 TATTTCTACATAAGATCCTTGTTTTGCCCCAAAGTTTGGTTCTTCACAGCTTATTATGTAGATTTAGGCAAAATGGACCCAGCTCCTTCCACTAGAACTTTCATTATAAAGGCAATCATTTCAAATAAAA i macFas5.chr1 I 344 C 0 s papAnu2.chr1 16641027 130 - 220367699 TATTTCTACATAAGATCCTTGTTTTGCCCCAAAGTTTGGTTCTTCACAGCTTATTATGTAGATTTAGGCAAAATGGACCCAGCTCCTTCCACTAGAACTTTCATTATAAAGGCAATCATTTCAAATAAAA i papAnu2.chr1 I 331 C 0 s chlSab2.chr25 82441247 130 + 85787240 TATTTCTACATAAGATCCTTGTTTTGCCCCAGAGTTTGGTTCTTCACAGCTTATTATGTAGATTTAGGCAAAATGGACCCAGCTCCTTCCACTAGAACTTTCATTATAAAGGCAATCATTTCAAATAAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14121605 130 - 49578535 CATTTCCACACAAGATCCTTGTTTTGCCCCGGAGTTTGGTTCTTCACAGCTTACTATGCAGATTTAGGCAAAATGGACCAAGCCCCATCCACTAGAACTTCCATTATAAAGGCAATCACTTCAAATAAAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178714376 118 + 195471971 TGTCTCCATACCACATCCTCATTTTCCCCTGAAGTGTGGGTCTT-ATAGCAGATG--GGAGATATA--CAGAATAGACT-------ATCTACGTGGACTTCCGTTACAAGAACAATCACAAGAAATAAAA i mm10.chr1 C 0 I 703 s canFam3.chr7 36292270 129 + 80974532 TATTTCTATAGGGGATTCTTATTTTGCCCAGAAGTATGGTTCTTCCTAGCACATTATGTGGATTTAGGTAAAACGGACCCAGCCCCACCCA-GGGAACTTCTGTTTTAAAGGCAATCACTGCAAACAGAG i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226220047 662 - 229942017 I a score=452374.000000 s hg38.chr1_KI270759v1_alt 113243 185 + 425601 CAGAAGCCATTTA------TCTTAATGAACCAGCAGGAAAATGAAGTCTGTTGAAATGATCTGAACCCTTC---AAAAAA---TATTGGTAATTCATTGTGGCTATATTTATTTTTATTAGTTTCTCT--ATGTTGCCTGTTTTATTGACTTTCCACA-GCAAaccaccacccccaccagcaccaccaAATACCGTTGTA s panTro4.chr1 224862937 185 + 228333871 CAGAAGCCATTTA------TCTTAATGAACCAGCAGGAAAATGAAGTCTGTTGAAATGATCTGAACCCTTC---AAAAAA---AACTGGTAATTCATCGTGGCTATATTTATTTTTATTAGTTTCTCT--ATGTTGCCTGTTTTATTGACTTTCCACA-GCAAACCACCACCCCCACCAGCACCACCAAATACTGTTGTA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140113677 171 - 143122389 CAGAAGCCTTTTA------TCTTAATGAATCAGCAGT-TCATTAAGTCTGTTGAAATGATCTGAACCGTTC---AAAAAA----ATTGGTAATTCATTGTGGCTATATTTATTTTTATTAATTTCTCT--ATGTTGCCTGTTTTATTGACTTTCCACA-GCAAACCAC------------CACAACCAAATACTGTTGTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16829853 181 - 229590362 CAGAAGCCATTTA------TCTTAATGAACCAGCAGGGAAATGAAGTCTGTTTAAATGATCTCAACCCTTC---AAAAAA---AATTGGTAATTCATTGTGGCTATATTTATTTTTATTAGTTTCTCT--GTGTTGCCTGCTTTATTAACTTTCCACA-GCAAATCACCACCACCA----CCACACCAAATACTGTTGTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223590159 181 - 227556264 CAGAAGCCATTTA------TCTTAATGAACCAGCAGGGAAATGAAGTCTGTTTAAATGATCTCAACCCTTC---AAAAAA---AATTGGTAATTCATTGTGGCTATATTTATTTTTATTAGTTTCTCT--GTGTTGCCTGCTTTATTAACTTTCCACA-GCAAATcaccaccacca----ccccaccaAATACTGTTGTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16641157 181 - 220367699 CAGAAGCCATTTA------TCTTAATGAACCAGCAGGAAAATGAAGTCTGTTTAAATGATCtcaacccttc---aaaaaa---aattgGTAATTCATTGtggctatatttatttttattagtttctct--GTGTTGCCTGCTTTATTGACTTTCCACA-Gcaaatcaccaccacca----ccccaccaaATACTGTTGTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82441377 181 + 85787240 CAGAAGCCATTTA------TCTTAATGAACCAGCAGGAAAATGAAGTCTGTTTAAATGATCTCAACCCTTC---AAAAAA---AATTGGTAATTCATTGTGGCTATATTTATTTTTATTAGTTTCTCT--GTGTTGCCTGCTTTATTGACTTTCCACA-GCAAATCATCACCACCA----CCCCACCAAATACTGTTGTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14121735 176 - 49578535 TGGAAGCCATTTA------TCTTAATGAACCAAGAGGAAAATGAAATCTGTTGAAATGATCTGAACCCTT-------AAA---AACTGGTAATTTATCATGGCTGTCTTCATTTGTGTTAGTTTCTCT--ATGCTGCCCGTTTTATTGACTTTCCACAGGCAAACTGACACCGCCA------CCACCAAATACTGTAGTA i calJac3.chr19 C 0 I 288 s mm10.chr1 178715197 176 + 195471971 CAGAAATCACTCATGGTCCTGTTAATGGATCAGAAGGAAAATGAAGTCTA---AAATGTTTTAAGCCCTTTGTGAAAAAC---CATTGGTGCTGCAAGGTAGCTGTGTCTGTTTTTATCTGCATCTGC--AGTCCACCTGT--------CTTCCTACA-GCAGACCCTAACCACTG------TTCCCAAGAACCCTT-TA i mm10.chr1 I 703 C 0 s canFam3.chr7 36292399 172 + 80974532 TGGAAGCCATTTA------TCTTAATGAAGGAGTAGGAAAATCAAGTCTGTTGAAATGATCTCAGTCCTCTCCCAAAAAGGCCACTTGGTAATCCACGGTGGCTGTATTTGTTTCCACGAAATTCTCTTCATCATGTCAGC-----TGACTGCTTGCA-GCAAA----------------CAACAGCAAATGGTGTTTTA i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226220047 662 - 229942017 I a score=436986.000000 s hg38.chr1_KI270759v1_alt 113428 162 + 425601 TTTTGATTCCTTATGTTC-TTTATTAGCAGGCTTACTTCTCTCTTCA---TAGAACTATGCCTTTGCCCCACTGCTCCATTTCAGAGCATTCGGGGCTATTCCTGGTAAGAAGCCAGCATTAGTTAATGTTACTGTTCTGGTCTTGGGCTGCAAAGAGTGCATGGA s panTro4.chr1 224863122 160 + 228333871 TTTTGATTCCTTATGTTCTTTTATTAGCAGGCTTACTTCTCTCTTCA---TAAAACTATGCCTTTGCCCCACTGCTCCATTTCAGAGCATTCGGGGCTATTCCTGGTAA-AAGCCAGCATTAG-TAATGTTACTGTTCTGGTCTTGGGCTGC-AAGAGTGCATGGA i panTro4.chr1 C 0 I 410 s nomLeu3.chr5 140113848 162 - 143122389 TTTTGATTCCTTATGTTC-TTTATTAGCAGGCTTACTTCTCCCTTAA---TAAAACTATGCCTTTGCCCCACTGCTCCATTTCAGAGCATTCGGGGCTATTCCTGGTAAGAAGCCAGCATTAGTTAGTGTTACTGTTCTGGTCTTGGGCTGCAAAGAGTGCATGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16830034 162 - 229590362 TTTTGATTCCTTATGTTC-TTTATGAGCAGGCTTACTTCTCCCTTAA---TGAAACTATGCCTTTGCCACACTCCTCCCTTTCAGAGCATTCGGGGCTATTCCTGGTAAGAAGTCAGCATTAGTTAATGTTACTGTTCTCGTCTTGGGCTGCAAAGAGTGCATGGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223590340 162 - 227556264 TTTTGATTCCTTATGTTC-TTTATGAGCAGGCTTACTTCTCCCTTAA---TGAAACTATGCCTTTGCCACACTCCTCCCTTTCAGAGCATTCGGGGCTATTCCTGGTAAGAAGTCAGCATTAGTTAATGTTACTGTTCTCGTCTTGGGCTGCAAAGAGTGCATGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16641338 162 - 220367699 TTTTGATTCCTTATGTTC-TTTATGAGCAGGCTTACTTCTCCCTTAA---TGAAACTATGCCTTTGCCACACTCCTCCCTTTCAGAGCATTCGGGGCTATTCCTGGTAAGAAGTCAGCATTAGTTAATGTTACTGTTCTCATCTTGGGCTGCAAAGAGTGCATGGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82441558 162 + 85787240 TTTTGATTCTTTATGTTC-CTTATGAGCAGGCTTACTTCTCCCTTAA---TCAAACTGTGGCTTTGCCCCACTCCTCCCTTTCAGAGCATTCGGGGCTATTTCTGGTAAGAAGTCAGCATTAGTTAATGTTACTGTTCTCATCTTGGGCTGCAAAGAGTGCATGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14122199 162 - 49578535 TTTTCATTCCTCACGTTT-TTTATTAGCAGGGTTACTTCTCCCTTAA---TAAAACCATGCCTTTGCCCCACTCCTCCGTTTCAGAGCATTCGGGGCTATTCCTGGTAAGAAGCCCGCAGTAGATAACTTGCCCGTTGTGGTGCTGGGCAGCAAAGGGGGCATGGA i calJac3.chr19 I 288 C 0 s mm10.chr1 178715373 156 + 195471971 -TCTGAGTCC-CGTGTTC-TTCATTAGCAGGCTTGCTTGTGCCTTCAGACTGGATCTCTGCCTGTTCCCCAC-------TTTGCAAGCACTCGAAGCCCTTCCCGGTGTGAAGCCAGCATTAGTTCATGTCACAGTTCTGACCCTGGGCTATGAAGAGCATGTAGC i mm10.chr1 C 0 C 0 s canFam3.chr7 36292571 149 + 80974532 -TTTCATTCCTCACTTTC-TCCATTAGTAGGTTCATTGCTC---TAA---T-AAATGATACCGTGGCCCCTCTCGTCAATC----AGCGTTTGAGGCCAGTCCTGGTGAAAAAACAGCGCTGGTTGATGCTTCTGCTCTGGTCTTGGGCCACAGACTGTGGA---- i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226220047 662 - 229942017 I a score=2137663.000000 s hg38.chr1_KI270759v1_alt 113590 721 + 425601 TAATGGTTCATGTTTTCCCCTCCAAATGGAGGGAAG--ACACAGACATAATTGAAACTTACAATGTCGGG-----GGATAATTTTATACCATTATTTTTAATGAAAACGGGGAAGTAT--CCTAGCTAAAATGCTGGAAAATAGCCTTCCAGTAGCCCTAAGCATCCAC-GTGTA---ACTGAATGCAGGTGGGAT-----AGAAACCTGTTCCCTCTTGCCTCCCTCCCCCAAAT--------AGAGAGATGCTGT---CAGTGGTCAGGAAAAGCAGTGAGCCACAGGTAATGAGCTCCGTATCCATTTTCTTTGTCAGATCTCCCAGCTGATGACAGAGAGTAGCCGGGAGGGACTAACAGAAGCAGTGCTGAACCGCTACAATGCAGACAAGCCTTCCGCCTGCAGTGTCCCAGCCTCGCAGGGCTCCTGCGTGGCCAGCGAGA---CTTCCACAGGCACATCGGTGGCCGCCTCCTTCTTTGCACGGTAAGAGAGCTGTTCAGATCCTTGGTTCTTTCCGATGAGCCCAGCTGGTTAGCCCCTCACGTGGACTAGCTCAGCTGAAA-CACTAGAAAGAGTTTGGGGCCGTTCTGTGATGTCATTCATTAAGAcagagtttctcagccatggcact-gtgacctctcgggccagctaac----tgtggt---ggggactgtcctgtgtgttatagggtgggctgcagcatccttggcctgtacccctcgatgtgtgcccgcagtaccctcctccagtc s panTro4.chr1 224863692 721 + 228333871 TAATGGTTCATGTTTTCCCCTCCAAATGGAGGGAAG--ACACAGACATAATTGAAACTTACAATGTCAGG-----GGATAATTTTATACCATTATTTTTAATGAAAACGGGGAAGTAT--CCTAGCTAAAATGCTGGAAAATAGCCTTCTAGTAGCCCTAAGCATCCAC-GTGTA---ACTGAATGCAGGTGGGAT-----AGAAACCTGTTCCCTCTTGCCTCCCTCCCCCAAAT--------AAAGAGATGCTGT---CAGTGGTCAGGAAAAGCAGTGAGCCACAGGTAATGAGCTCCGTATCCACTTTCTTTGTCAGATCTCCCAGCTGATGACAGAGAGTGGCCGGGAGGGACTAACAGAAGCAGTGCTGAACCGCTACAATGCAGACAAGCCTTCCGCCTGCAGTGTCCCAGCCTCGCAGGGCTCCTGCGTGGCCAGCGAGA---CTTCCACAGGCACGTCGGTGGCCGCCTCCTTCTTTGCACGGTAAGAGAGCTGTTCAGATCCTTGGTTCTTTCCGATGAGCCCAGCTGGTTAGCCCCTCACGTGGACTAGCTCAGCTGAAA-CACTAGAAAGAGTTTGGGGCCGTTCTGTGATGTCATTCATTAAGAcagagtttctcagccatggcact-gtgacctctcgggccagctaac----tgtggt---ggggactgtcctgtgtgttatagggtgggctgcagcatccttggcctgtacccctcgatgtgtgcccgcagtaccctcctcgagtc i panTro4.chr1 I 410 C 0 s nomLeu3.chr5 140114010 721 - 143122389 TAATGGTTCATGTTTTCCCCTCCAAATGGCGGGAAG--ACACAGACATAATGGAAACTTACAATGTCAGG-----GGATAATTTTATACCATTATTTTTAATGAAAACGGGGAAGTAT--CCCAGCGAAAATGCTGGAAAATAGCCTTCTAGTAGCCCTAAGCATCCAC-GTGTA---ACTGAATGCAGGTGGGAT-----AGAAACCTGTTCCCTCTTGCCTCCCTCCCCCAAAT--------AGAGAGATGCTGT---CAGGGGTCAGGAAGTGCAGTGAGCCACAGGTAATGAGCTCCGTATCCATCTTCTTTGTCAGATCTCCCAGCTGATGACAGAGAGTGGCCGGGAGGGACTGACAGAAGCAGTGCTGAACCGCTACAATGCAGACAAGCCTTCCGCCTGCAGCGTCCCAGCCTCGCAGGGCTCCTGCGTGGCCAGCGAGA---CTTCCACAGGCACGTCGGTGGCTGCCTCCTTCTTTGCACGGTAAGAGAACTGTTCAGATGCTTGGCTCTTTCCGATGAGCCCACCTGGTTAGCCCCTCACATGGACTAGCTCAGCCGAAA-CACTAGAAAGAGTGTGGGGCCAATCTGTGATGTCATTCATTAAGAcagagtttctcagccatcgcact-gtgacctctcgggccagctaac----tgtggt---ggggactgtcctgcgtgttataggatgggctgcagcatccttggcctgtacccctcgatgtgtgccctcagtaccctcctcgagtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16830196 719 - 229590362 TAATGGTTCATGTTTTCCCCTCCAAATGGAGGGAAG--ACACAGACATAATTGAAACTTACAATGTCAGG-----GGATAATTTTATACCATTATTTTTAATGAAAATGGGGAAGTAT---CTAGCTAAAATGCTGGAAAACAGCCTTCTAGTAGCCCTAAACACCCAT-GTGTA---ACTGAATGCGGGTGGGAT-----GGAAACCTGTTCCCTCTTGCCTCCCTCCCCCAAAT--------AGAGAGATGCTGT---CAGTGGTCAGGAAGTGCAGTGAGCCACAGGTAATGAGCTCCGTATCCATTTTCTTTGTCAGATCTCCCAGCTGATGACAGAGAGTGGCCGGGAGGGGCTGACAGAAGCAGTGCTGAACCGCTACAATGCAGACAAGCCTTCCGCCTGCGGCGTCCCAGCCTCCCAGGGCTCCTGCGTGGCCAGCGAGA---CTTCCACAGGCACGTCGGTGGCCGCCTCCTTCTTTGCACGGTAGGAGAGCTGTTCAGATCCTTGGTTCTTTCCGACGAGCCCACCTGGTTAACCTCTCACATGGACTAGCTCAGCTGAAA-CACTAGGAGGAGTTTGGGGCCATTCTGTGACATCATTCATTAAAAcagggtttttcaaccctggcact-ttgacatcttgggccagctgac----tgtggt---gggggctgtcctgtgtgttatagga-gggctgcagcatccgtggcctgtaccccttgatgtgtgcccatagtaccctcctcatgtc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223590502 719 - 227556264 TAATGGTTCATGTTTTCCCCTCCAAATGGAGGGAAG--ACACAGACATAATTGAAACTTACAATGTCAGG-----GGATAATTTTATACCATTATTTTTAATGAAAACGGGGAAGTAT---CTAGCTAAAATGCTGGAAAACAGCCTTCTAGTAGCCCTAAGCACCCAT-GTGTA---ACTGAATGCGGGTGGGAT-----GGAAACCTGTTCCCTCTTGCCTCCCTCCCCCAAAT--------AGAGAGATGCTGT---CAGTGGTCAGGAAGTGCAGTGAGCCACAGGTAATGAGCTCCGTGTCCATTTTCTTTGTCAGATCTCCCAGCTGATGACAGAGAGTGGCCGGGAGGGGCTGACAGAAGCAGTGCTGAACCGCTACAATGCAGACAAGCCTTCCGCCTGCGGCGTCCCAGCCTCCCAGGGCTCCTGCGTGGCCAGCGAGA---CTTCCACAGGCACGTCGGTGGCCGCCTCCTTCTTTGCACGGTAGGAGAGCTGTTCAGATCCTTGGTTCTTTCCGACGAGCCCACCTGGTTAACCTCTCACATGGACTAGCTCAGCTGAAA-CACTAGGAGGAGTTTGGGGCCATTCTGTGACATCATTCATTAAAAcagggtttttcaaccctggcact-ttgacatcttgggccagctgac----tgtggt---gggggctgtcctgtgtgttatagga-gggctgcagcatccgtggcctgtaccccttgatgtgtgcccatagtaccctcctcatgtc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16641500 722 - 220367699 TAATGGTTCATGTTTTCCCCTCCAAATGGAGGGAAG--ACACAGACATAATTGAAACTTACAATGTCAGG-----GGATAATTTTataccattatttttaatgaaaacggGGAAGTAT---CTAGCTAAAATGCTGGAAAACAGCCTTCTAGTAGCCCTAAGCACCCAA-GTGTA---ACTGAATGCAGGTGGGAT-----GGAAACCTGTTCCCTCTTGCCTCCCTCCCCCAAAT--------AGAGAGATGCTGT---CAGTGGTCAGGAAGTGCAGTGAGCCACAGGTAATGAGCTCCGTATCCATTTTCTTTGTCAGATCTCCCAGCTGATGACAGAGAGTGGCCGGGAGGGACTGACAGAAGCAGTGCTGAACCGCTACAATGCAGACAAGCCTTCCGCCTGCAGCGTCCCAGCCTCCCAGGGCTCCTGCGTGGCCAGCGAGACTTCTTCCACAGGCACGTCGGTGGCCGCCTCCTTCTTTGCACGGTAGGAGAGCTGTTCAGATCCTTGGTTCTTTCCGATGAGCCCACCTGGTTAACCTCTCACATCGACTAGCTCAGCTGAAA-CACTAGGAGGAGTTTGGGGCCATTCTGTGACATCATTCATTAAAACAGGGTTTTTCAACCCTGGCACT-TTGACATCTTGGGCCAGCTAAC----TGTGGT---GGGGACTGTCCTGTGTGTTATAGGA-GGGCTGCAGCATCCATGGCCTGTACCCCTTGATGTGTGCCCATAGTACCCTCCTCATGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82441720 719 + 85787240 TAGTGGTTCATGTTTTCCCCTCCAAATGGAAGGAAG--ACACAGACATAATTGAAACTTACAATGTCAGG-----GGATAATTTTATACCATTATTTTTAATGAAAACGGGGAAGTAT---CTAGCTAAAATGCTGGAAAACAGCCTTCTAGTAGCCCTAAGCCCCCAT-GTGTA---ACTGAACGCAGGTGGGAT-----GGAAACCTGTTCCCTCTTGCCTCCCTCCCCCAAGT--------AGAGAGATGCTGT---CAGTGGTCAGGAAATGCAGTGAGCCACAGGTAATGAGCTCCGTATCCATTTTCTTTGTCAGATCTCGCAGCTGATGACAGAGAGTGGCCGGGAGGGGCTGACAGAAGCAGTGCTGAACCGCTACAATGCAGACAAGCCTTCCGCCGGCAGCGTCCCAGCCTCCCAGGGCTCCTGCGTGGCCAGCGAGA---CTTCCACAGGCACGTCGGTGGCCGCCTCCTTCTTTGCACGGTAGGAGAGCTGTTCAGATCCTTGGTTCTTTCCGATGGGCCCACCTGGTTAGCCTCGCACGTGGACTAGCTCAGCCGAAA-CACTAGGAGGAGTTTGGGGCCATTCTGTGACGTCATTCATTAAGAcagggtttttcaaccctggcact-ttgacatcttgggccagctaac----tgtggt---ggggactgtcctgtgtgttatagga-gggctgcagcatccgtggcctgtaccccttgatgtatgcccatagtaccctcctcatatc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14122361 705 - 49578535 TAATGGTTCCAGTTTTTCCCTCCAAATGGAGGGAAG--ACACAGACGTAATTGAAACTTACAATGTCAAG-----GGGTAATTTTATTCCATTATTTTTAACGAAAATGGGGAGGTATCACCTAGCTAAAATGCCGGAAAATAGCCTCCTAGTAGCCCTAAGCACCCAC-GTGTG---GCTGAATGCAGGTGGGAT-----AGAACCCTGTTTCCTCTTACCTCCCTCCCCCAAAT--------AGAGAGATGCCAT---CAGTGGTCGGGAAACGCAGCAAGCCACAGGTAATGAGCTCGGTCTCCACTTTCCTTGTCAGATCTCCCAGCTGATGACAGAGAGTGGCCGGGAAGGACTGACCGAAGCCGTGCTGAACCGCTACAATGCAGACAAGCCTTCAGCCTGCAGCGTCCCCGCCTCGCAGGGCTCCTGCTTGGCCAACGAGA---CTTCTGCAGGTACCTCGGTGGCCGCTTCCTTCTTTGCACGGTAAGAGAGCCGTTCACATCCGTGGTTCCTTCCGCTGGGCGTGCCTGGTTAACCTCTCGCGTGGACTGATGCGGCTGAAA-CAGCAGAAAGCATTTGGGGCGGTTCTTTGGTGTCACTGTTTACG--GGACtttctcaaccatggctct-tagacatccttggccatctaac----tgttgt---ggggactgtcctgtgtgttgaagga----------------tggcctgtacccctcggtgtgtgcctgaaggaccttccctgagtt i calJac3.chr19 C 0 C 0 s mm10.chr1 178715529 698 + 195471971 TAACAGGTGACACTTTCTCCTCTCCAGGAAGGGGAG--ATGCAGGTGTAAT-ACAGCCTATAATGTCAGG-----GGTT-ATTTCACTACATTATTTTAAATGGAAACAGGAAGTGAC---CTAGCTAGCATGCTGGGAAATGG--TCACAGAAACCCCGTGTGCCCCC-AGATA---ACTGATGGTGGGTGGGAT-----TAAACCC------------ACCCTCTTCTCTAGAC--------AGCAACCTGCTGG---CAATGGGCAGGCA-TTCTGTGAGCCACAGGTAATGAGCTTCATGT-CATTTTCTTTGTCAGATCTCCCAGCTGATGACAGAGACCGGCCGCGAGGGACTGACAGAGTCAGCGCTCAACCGCTACAATGCTGACAAGCCTGCAGCCAGCAGTGTCCCAGCCCCACAGGGTTCCTGTGTGGCCAGTGAGA---CTTCCACAGGGACCTCAGTGGCCGCTTCCTTCTTCGCACGGTAAGAGA--TGCTCAGAACTTTGGTTCTTTTCAGTACATCCAGCTGGCGTGCATCCTATGTGGACCAGATCAGCTGGAACCATTAGAAGGCATTCAATACCGTTCTTTGAGTTGGCTTTTTGAAAGcaagatttccaaactgggcactgttgtcattgtgagccagtgaactctgtgttga---ggggactgtcctatgcattatagtgtgtttagcaggatctttggcct---ctttctactccatgcccat-gaacccttctcc---- i mm10.chr1 C 0 C 0 s canFam3.chr7 36292720 736 + 80974532 TAATGGCTCATGCTTTCTCTACCAAATGGACAGGAGTCACACAGGCATAATTGAAACTCACAGTGCTGGGGAGGAGGGTAATTTTTTCCCATTATTTTTAATGAAAATGAGGAGGTGT--CCAAGCTAAAATGCTGGAAAGTAGCATCCGAGAAGCCCAAAGCACCCACAGTGTACATGCAGAGTGTCCCTGGTTCCCCCAAATACCCCCTCCCCACCTGCACCCTGCCCCTACTTCACGCTCACAAGGGATGCTGGCCACGGTGCTCAGGAAGTGCACTGAGCTACAGTTAACAAGCTCAATCTCCATTTTCCTCATCAGATCTCCCAGCTGATGACAGAAACAGGTCGTGAGGGCCTGACCGAGGCAGCACTGAATCGCTACAATGCGGACAAGCCTTCAGCCTGCAGTGTCCCGGCCTCCCAGGGCTCCTGCGTGGCCAGTGAGA---CCTCCACAGGCACTTCGGTGGCCGCTTCCTTCTTTGCCAGGTAAGAGACACATCCACTGCCTCATTTCTTTCTGATGGGCCCACCTGGTTGGGCTGGGATTTGGGCCGAGTTAGCTAAAA-TGCTGGGATAAGTTTGGGACCGCTCTTGGGCTTCACTCTCCAAGAcagggttcctcaacctcagatag-ctcacagcttgggccagacagc----tctgatatggggggcggtcctgtgcctca-----------gcagcattcctggcccctacccaccggact---cccattgcatctgccctagtt- i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226220047 662 - 229942017 I a score=122331.000000 s hg38.chr1_KI270759v1_alt 114311 47 + 425601 gtgactaccaaaaatgtctgcagacattgtgagaggc-cccagggTCG s panTro4.chr1 224864413 47 + 228333871 gtgactaccaaaaatgtctgcagacattgtgagaggc-cccagggttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226220709 46 - 229942017 gtgactaccaaaaatgtctgcagacattgtgagaagc-cccagggt-g i ponAbe2.chr1 I 662 C 0 s nomLeu3.chr5 140114731 46 - 143122389 gtgactaccaaaaatgtctgcagacattgTGAGAAG--CCCAGGGTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16830915 45 - 229590362 gtgaacacc--aaatgtctgcagacattgtcggaaac-cctggggTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223591221 45 - 227556264 gtgaacacc--aaatgtctgcagacattgtcggaaac-cccggggTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16642222 47 - 220367699 GTGAATAccaaaaatgtctgcagacattgtcGGAAAC-CCCGGGGTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82442439 47 + 85787240 atgaataccaaacatgtctgcagacattgtcggaaac-cccggggTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14123066 47 - 49578535 gtgactaccaaaaatgtccccagacattgtcaaaagc-cctggggTTG i calJac3.chr19 C 0 I 301 s mm10.chr1 178716227 38 + 195471971 ----ctacc----atgtc--ctgaaataaccagaggtgtcCTGGATTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36293456 47 + 80974532 gcgatgaccagaaaggtcc-cagacattgccatgtgtgccctgggtgg i canFam3.chr7 C 0 C 0 a score=1558543.000000 s hg38.chr1_KI270759v1_alt 114358 451 + 425601 AGAGTCGCTGCTCTCTTGATGTGTAGCTCCAAAGATGCTCTTTTGCAGCATCAGGACTTT-GTAGAGGCATCCCTCTGGTGGGTGTTTCCAGATTTATCTTCTCATTACAGAAATTGAACTGCTTAAAAG---C----TATTAAA---------TAGATGGC-----------AGG-TTT------------------------------------------------------------------------------------------------------------------------------------------------------------TCT---CCCCCGCTTCTTGACAGATTA---GCCAGAGTGTT-ATCAAATAC----TCTCCAGCTAATCTTGGGAACTTCAAAAATACAAGAAACAAAAAAGAAAGGTATTTCAACAATGTTTTCTGCCTAATTTTAGCAACATGGCAGAGACGGGGCGGGAGACGAAGGACAGCTgagcaggaaaggacttcagggattgtctggttccatctcctta-ttt-atgaatgaggaaaccgaggaccaggaaggttcaactaggagtgagtttatagcacagccagaaatagaaaccggatTGCTCTACATTTTT s panTro4.chr1 224864460 453 + 228333871 agaaccgctgCTCTCTTGATGTGTAGCTCCAAAGATGCTCTTTTGCAGCATCAGGACTTT-GTAGAGGCATCCCTCTGGTGGGTGTTTCCAGATTTATCTTCTCATTACAGAAATTGAACTGCTTAAAAG---C----TATTAAA---------TAGATGGC-----------AGG-TTT------------------------------------------------------------------------------------------------------------------------------------------------------------CCC-GCCCCCCCCTTCTTGACAGATTA---GCCAGAGTGTT-ATCAAATAC----TCTCCAGCTAATCTTGGAAACTTCAAAAATACAAGAAACAAAAAAGAAAGGTATTTCAATAATGTTTTCTGCCTAATTTTAGCAACATGGCAGAGACGGGGCGGGAGACGAAGGACAGCTgagcaggaaaggacttcagggattgtctggttccatctcctta-ttt-atgaatgaggaaaccgaggaccaggaaggttcaactaggagtgagtttatagcacagccagaaatagaaaccggattcctCTACATTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226220755 452 - 229942017 agaaccgcTGCTCTCTTGATGTGTAGCTCTAAAGATGGTC-TCTGCAGCATCAGGACTTT-GTAGAGCCATCCCTCTGGTGGGTGTTTCCAGATTTATCTTCTCATTATAGAAATTGAACTGCTTAAAAG---C----TATTAAA---------TAGATGGC-----------AGG-GTT------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-CTCCCCCCCTTCTTGACAGATTA---GCCAGAGTGTT-ATCAAATAC----TATCCAGCTAATCTTGGGAACTTTAAAAATACAAGAAACAAAAAAGAAAGGTATTTCAACAATGTTTTCTGCCTAATTTTAGCAACATGGCAGAGACGGGGCGGGAGACGAAGGACAGCTgagcaggaaaggacttcggggattgtctggttccatctcctta-ttt-atgaatgaggaaaccgaggaccaggaaggttcaactaggagtgagtttatagcacagccagaaatagaaaccggattcctCTACGTTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140114777 454 - 143122389 AGAGCCGCTGCTCTCTTGATGTGTAGCTCTAAAGATGTTCTTCTGCAGCGTCAGGACTTT-GTAGAGGCATCCCTCTGGTGGGTGTTTCCAGATTTATCTTCTCATTACAGAAATTGAACTGCTTAAAAG---C----TATTAAA---------TAGATGGC-----------AGG-GTT------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCCCCCCACTTCTTGACAGATTA---GCCAGAGTGTT-ATCAAATAC----TATCCAGCTAATCTTGGGAACTTTAAAAATACAAGAAACAAAAAAGAAAGGTATTTCAACAATGTTTTCTGCCTAATTTTAGCAACATGGCAGAGACAGGGCGGGAGACGAAGGACAGCTgagcaggaaagggcgtcagggattgtctggttccatctcctta-ttt-atgaatgaggaaaccgaggaccgggaaggttcaactaggagtgagtttatagcacagccagaaatagaaaccggattcctCTACGTTTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16830960 450 - 229590362 ATAACCGCGGCTCTCTTGATGTGCGGCTCTGCAGATGGTCCTCCTCAGCACAAGGACTTT-GGAGAGGCATTCTTCTGGCGGGGGTTTCCAGATTTATCTTCTCGTTACAGAAATCGAACTGCTTAAAAG---C----TATTAAA---------TGGATGGC-----------GGG-TTT------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----CCCCCCTTCTTGACAGATTA---GCCAGAGCGTT-ATCAAATAC----TATCCAGCTAATCTTGGGAACTTTAAAAATACAAGAAACGAAAAAGAAAGGTATTTCAACAATGTTTTCTGCCTAATTTTAGCAACATGGCAGAGACGGGGCGGGAGACGAAGGACAGCTgagcaggaagggacttcaggaattgtctggttccatctcctta-ttt-atgaacgaggaaaccaaggaccaggaaggttcaactaggagtgagtttatagcacagccagaaatagaaaccagattcctCTACATTTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223591266 450 - 227556264 ATAACCGCGGCTCTCTTGATGTGCGGCTCTGCAGATGGTCCTCCTCAGCACAAGGACTTT-GTAGAGGCATTCTTCTGGCGGGGGTTTCCAGATTTATCTTCTCGTTACAGAAATCGAACTGCTTAAAAG---C----TATTAAA---------TGGATGGC-----------GGG-TTT------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----CCCCCCTTCTTGACAGATTA---GCCAGAGCGTT-ATCAAATAC----TATCCAGCTAATCTTGGGAACTTTAAAAATACAAGAAACAAAAAAGAAAGGTATTTCAACAATGTTTTCTGCCTAATTTTAGCAACATGGCAGAGACGGGGCGGGAGACGAAGGACAGCTgagcaggaagggacttcaggaattgtctggttccatctcctta-ttt-atgaacgaggaaaccaaggaccaggaaggttcaactaggagtgagtttatagcacagccagaaatagaaaccagattcctCTACATTTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16642269 450 - 220367699 ATAGCCGCTGCTCTCTTGATGTGTGGCTCTACAGATGGTCCTCCTCAGCACAAGGACTTT-GTAGAGGCATTCTTCTGGCGGGGGTTTCCAGATTTATCTTCTCATCATAGAAATCGAACTGCTTAAAAG---C----TATTAAA---------TGGATGGC-----------AGG-TTT------------------------------------------------------------------------------------------------------------------------------------------------------------TTC----CCCCTCTTCTTGACAGATTA---GCCAGAGCGTT-ATCAAATAC----TATCCAGCTAATCTtgggaactttaaaaatacaagaaacaaaaaagaaaggtatttcaacaatgttttctgCCTAATTTTAGCAACATGGCAGAGACGGGGCGGGAGACGAAGGACAGCTGAGCAGGAAGGGACTTCAGGAATTGTCTGGTTCCATCTCCTTA-TTT-ATGAACGAGGAAACCAAGGACCAGGAAGGTTCAACTAGGAGTGAGTTTATAGCACAGCCAGAAATAGAAACCAGATTCCTCTACATTTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82442486 447 + 85787240 ATAACCGCGACTCTCTTGACGTGCAGCTCTGCAGATGGTCCTCCCCAGCACGAGGACTTT-GTAGAGGCATCCTTCTGGAGGGGGTTTCCAGATTTATCTTCTCGTTACAGAAATCGAACTGCTTAAAAG---C----TATTAAA---------TGGATGGC-----------AGGTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----CCCCCCTTCTTGACAGATTA---GCCAGAGCGTT-ATCAAATAC----TATCCAGCTAATCTTGGGAACTTTAAAAACACAAGAAACAAA----AAAGGTATTTCAACAATGTTTTCTGCCTAATTTTAGCAACATGGCAGAGACGGGGTGGGAGACGAAGGACAGCTgagcaggaagggacttcaggcattgtctggttccatctcctta-ttt-atgaacgaggaaaccaaggaccaggaaggttcaactaggagtgagtttatagcacagtcagaaatagaaaccagattcctCTACATTTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14123414 454 - 49578535 AGAACCACTGCTCTCTTGATGTGTAGCTCTAAAGAGGGTCTTCCTCTGGATGAGAACTTT-TGTTGGGGATCCCTCTGGCGGCTGTTTCCAGATTTATCTTCTCATTCTAGAAACTTAACTGTTTAAAAG---C----TATTAAA---------TAGATGGC-------TGGGGGG-ATT------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----TACTCCTTCTTGACAGATGA---GCCAGAGAGTT-ATCAAATAC----TATCCAGCTAATCTTGGGAACTTTAAAAATATAAGAAACAAAAAAGAAAGATATTTCAACAATGTTTTCTCCCTAATTTTAGCAACAAGGCAGAGACAGGGCAGGAGACAAAGGACAGCTgagcaggaaaggacttcagagattgtctgattccatctcctta-ttt-atgagtgagaaaaccgagggccaggaaagtTCCACTAGAAGCGGGTTTATAGCACAGCCAGAAATGGAAACTGGATTTATCTGCCTTTTT i calJac3.chr19 I 301 I 313 s mm10.chr1 178716265 444 + 195471971 AGAACCACTGTTATAAGAACATATGGCTCTAAAGATGGCCCTCCTTGGGGTAAGACTGTA-ATAGGTGAAGTCCTGTGGCTGCTGATCCCATACTTACCTGCTCAT-----GAATCTGCCCCCAAAAAAGATAC----TATTAAA---------GAGATGTT-----------AGG-TGT------------------------------------------------------------------------------------------------------------------------------------------------------------ATT--------CCTTCTTGACACACTACTGGATATATAGCTAATCAAACACTGGATATAAGGCTAATCTTAGAGAGTTTAAAGCCAGGAGAACCAAAAATGAAAGGTATTTGAACTATGTTGCCAGTCTAATTTTAGCAACAAGGCAGAGACAGGGCAGGAGACAAAGGACagctgagtgggacagca------gggttgtccaattcaatctcatgatttt-atggacaaggacactgaagagcgggaaggtttg--tcagagttaactcataacagagacagaaatagcag-ggggttgatatgtctggtc i mm10.chr1 C 0 I 2 s canFam3.chr7 36293503 628 + 80974532 AGAACCATGGTGCTAAGAGCATGTGGCCCTACAGATGTCCTGCT--GGGATGAGGACTTTAGTGGGTATGACCCTGTGGCTGGTACTTCCAGATTGACATTCTCATCACAGATAATGAACTGCTCAAAAA---TGAAGTAGGAAAGgaggtgcctgggtggctcagtggtggaggg-tctgcctttggctcaggttgtaatgctgggatcctaggatccagtactgaattgggctccctgcagggagcctgcttctccctctacctgtgtctttgtattctcatgaataaataaataaaaccttaaaaaaTAAATGACCTAGGAAGGAGATGACCATTT----TCTTCATTCTTGACAGACTA---GCTGGATAGTA-TATGATAAC----CATCCAGCTAATCTTAGTGGCTTTGAAAACATGAGAAACAAAAGCGAAAGGTATTTCAACAATGTTTCCTTCCTAAATTTAGCCGTGTGGCAGAGACAGGGTGGGAGACAAAGGACAGCTGAGCC--CAAGCCctttcgggatcatctaattcagtgtccttg-tttcatgaaggagtgaactgaggaccaagaaagttgagctatgagttaatttatagcaaagctggaaatagaaaccagattcctCTGCCttttt i canFam3.chr7 C 0 C 0 a score=7223.000000 s hg38.chr1_KI270759v1_alt 114809 7 + 425601 ----------------------CTGTATA------------ s panTro4.chr1 224864913 7 + 228333871 ----------------------CTGTATA------------ i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226221207 7 - 229942017 ----------------------CTGTATA------------ i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140115231 7 - 143122389 ----------------------CTGTATA------------ i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16831410 7 - 229590362 ----------------------CTGTATA------------ i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223591716 7 - 227556264 ----------------------CTGTATA------------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16642719 7 - 220367699 ----------------------CTGTATA------------ i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82442933 7 + 85787240 ----------------------CTGTATA------------ i chlSab2.chr25 C 0 C 0 s mm10.chr1 178716711 7 + 195471971 ----------------------ctgctca------------ i mm10.chr1 I 2 I 2 s canFam3.chr7 36294131 41 + 80974532 ttttttcttttcttttcttcttcttttttCCCCCCTTGGTG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14123868 313 - 49578535 I a score=1520780.000000 s hg38.chr1_KI270759v1_alt 114816 457 + 425601 ACTCATGTTTTAATTTAATGCTCAGAACTGAACCTTGGAAAACTTTCTCTGTCTAAGATTTGCAAGCTCCTGAGTAAACAGGACATAGAATAAATGCGATAGCATCAGATACGAAATCACAAgaccttttgggttccagttgcagcagttctgcctcagtttcttcatgtataaaatgaggatgatacctgctctgcagggtcgctccgaagactaacataagatgatgagaaattataaagtactgtagaaatggttac----------------tactatGTCAGTA-AGAAGGAATATTGTGTGGCTTTGCTTGTTATCTTTATGAATGGTAACATCCAGAACACAAATATGGGGAAGGGGCTCTGATT-AGGACAGCGGCAAGGCAGAGGAGG-AC-AGAGGGCTAAGACCCTGGA-TGATGGGACCC----TAAAGGCAGCACACAGG---GCTTGTTGGAAGACCGGCTTTGAGGGTCT s panTro4.chr1 224864920 454 + 228333871 ACTCATGTTTTAATTTAATGCTCAGAACTGAACCTTGGAAAACTTTCTCTGCCTAAGATTTGCAAGCTCCTGAGTAAACAGGACATAGAATAAATGCGATAGCATCAGATACGAAATCACAAGACCTTTTGGGTTCAAGTTGCAG---TTCTgcctcagtttcttcatctataaaatgaggataatacctactctgcagggtcgctccaaagactaaaataagatgatgagaaattataaagtactgtagaaatggttac----------------tactatGTCAGTA-AGAAGGAATATTGTGTGGCTTTGCTTGTTATCTTTATGAATGGTAACATCCAGAACACAAATATGGGGAAGGGGCTCTGATT-AGGACAGCGGCAAGGCAGAGGAGG-GC-AGAGGGCTAAGACCCTGGA-TGATGGGACCC----TAAAGGCAGCACACAGG---GCTTGTTGGAAGACCGGCTTTGAGGGTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226221214 454 - 229942017 ACTCATGTTTTAATCTAATGCTTAGAACTGAACCTTGGAAAACTTTCTCTGCCTAAGATTTGCAAGCTCCTGAGTAAACAGGACATAGAATAAATGCGATAGCATCAGATATGAAATCACAAGACCCTTTGGGTTCATGTTGAAG---TTCTgcctcagtttcttcttctataaaatgaggataatacctactctgcagggtctctgtgaagactaaaatacgatgatgagaaattatgaagtactgtagaaatggttac----------------tactatGTCAGTA-AGAAGGAATATTGTGTGACTTTGCTTGTTATCTTTATGAATGGTAACATCCAGAACACAAATATGGGGAAGGGGCTCTGATT-AGGACAGCGGCAAGGCAGAGGAGG-AC-AGAGGGCTAAGACCCTGGA-TGATGGGACCC----TAAAGGCAGCACACAGG---GCTTGTTGGAAGACCGGCTTTGAGGGTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140115238 454 - 143122389 ACTCGTGTTTTAATTTAATGCTTAGAACTGAACCTTAGAAAACTTTCTCTGCCTAAGACTTGCAAGCTCCTGAGTAAACAGGACATAGAATATATACAATAGCATCAGATATGAAATCACAAGACCCTTTGGGTTCAAATTGCAG---TTCTgcctcagtttcttcatctataaaatgaggataatacctactctgcagggtcactccgaagactaaaataagatgatgagaaattataaagcactGTAGAAATGGTTGC----------------TACTATGTCAGTA-AGAAGGAATGTTGTGTGGCTTTGCTGGTTATCTTTATGAATGGTAACATCCAGAACACAAATATGGGGAAGGGGCTCTGATT-AGGACAGCGGCAAGGCAGAGGAGG-AC-AGAGGGCTAAGACCCTGGA-TGATGGGACCC----TAAAGGCAGCACATAGG---GCTTGTTGGAAGACTGGCTTTGAGGGTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16831417 454 - 229590362 ACTCATGTTTTAATTTGATGCCTAGAACTGAACCTTAGAAAACTTTCTCCGCCTAAGATTTGCAAGCTCCTGAGTAAATAGGACATAGAATAAATACGATAGCATCAGATATGAAATCACAAGACCCTTTGGGTTCAAGTGGCAG---TTCTgcctcagtttctccatctataaaatgaggataatacctactctgcagtgtcgctctgaagactaaaataaggtggtgataaattgtaaagtactgtagaaatggttac----------------tactattTCAGTA-AGAAGGAATATTGTGTGGCTTTGCTTGTTATCTTTATGAATGGTAACATCCAGAACACAAATGTGGGGAAGGGGCTCTGATT-AGGACAGCGGCAAAGCAGAGAAGG-TC-AGAGGGCTAAGACCCTGGA-TGATGGGACCC----TAAAGGCAGCACACGGG---GCTTGTTGGAAGACCGGCTTTGAGGGTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223591723 454 - 227556264 ACTCATGTTTTAATTTGATGCCTAGAACTGAACCTTAGAAAACTTTCTCCGCCTAAGATTTGCAAGCTCCTGAGTAAATAGGACATAGAATAAATACGATAGCATCAGATATGAAATCACAAGACCCTTTGGGTTCAAGTGGCAG---TTCTgcctcagtttctccatctataaaatgaggataatacctactctgcagtgtcgctctgaagactaaaataaggtggtgataaattgtaaagtactgtagaaatggttac----------------tactattTCAGTA-AGAAGGAATATTGTGTGGCTTTGCTTGTTATCTTTATGAATGGTAACATCCAGAACACAAATGTGGGGAAGGGGCTCTGATT-AGGACAGCGGCAAGGCAGAGAAGG-TC-AGAGGGCTAAGACCCTGGA-TGATGGGACCC----TAAAGGCAGCACACGGG---GCTTGTTGGAAGACCGGCTTTGAGGGTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16642726 450 - 220367699 ACTCATGTTTTAATTTGATGCCTAGAACTGAACCTTAGAAAACTTTCTCTGCCTAAGATTTGCAAGCTCCTGAGTAAATAGGACATAGAATAAATATGATAGCATCAGATATGAAATCACAAGACCCTTTGGGTTCAAGTTGCcg---ttctgcctcagtttctccgtctataaaatgaggataatacctACTCTGCAGTGTCGCTCTGAAGACTAAAATAAGGTGGTGATAAATTGTAAAGTACTGTAGAAATGGTTAC----------------TACTATGTCAGTA-AGAAGGAATATTGTGTGGCT----TTGTTATCTTTATGAATGGTAACATCCAGAACACAAATATGGGGAAGGGGCTCTGATT-AGGACAGTGGCAAGGCAGAGGAGG-AT-AGAGGGCTAAGACCCTGGA-TGATGGAACCC----TAAAGGCAGCACAAGGG---GCTTGTTGGAAGACCGGCTTTGAGGGTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82442940 454 + 85787240 ACTCATGTTTTAATTTAATGCCCAGAACTGAACCTTAAAAAACTTTCTCCGCCTAAGATTTGCAAGCTCCTGAGTAAATAGGACACAGAATAAATACAATAGCATCAGATATGAAATCACAAGACCCTTTGGGTTCAAGTGGCAG---TTCTgcctcagtttctccatctataaaatgaggataatacctactctgcagtgttgctctgaagactaaaataaggtggtgataaattgtaaagtactgtagaaatggttac----------------tactatGTCAGTA-AGAAGGAATATTGTGTGGCTTTGCTTGTTATCTTTATGAATGGTAACATCCAGAACACAAATGTGGGGAAGGGGCTCTGATT-AGGACAGTGGCAAGGCAGAGAAGG-TC-AGAGGGCTAAGACCCTGGA-TGATGGAACCC----TAAAGGCAGCACACGGG---GCTTGTTGGAAGACTGGCTTTGAGGGTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14124181 437 - 49578535 ACTCATATTTTAATTTAATATTTGAAACTGAACCTTAGAAAACTTTCTCTGCCTAAGATTTGCAAACCACTGAGTGAACAGGGCCTAGAAGAAATACGGTAGCATCAGATATGAAAt-gtaagaccctttgggttcaagttgcag---ttcggcctcagcttcgccttctataaaatgaggat-atacctcctctg-agggttgctctgaagac--agataaggtgatggaaagtgataaagtgctgtagaaGTGGTGAC----------------AGCGGTGGCAGGG-AGAAGGAGTGCTGTGTGGCT------------GTTCCGAATGGTAGCATCCAAAACACAAATGTGAGGAAGGGGGGCTGATT-AGGACGGGGACAAGGCAGAGGAGG-AC-AGAGGCCTGATGCCCCGGA-CGATGGCACCC----TAAAGGCAGCACACGGG---GCTTGCTGGAAGACCGGCTTTGAGGGTCC i calJac3.chr19 I 313 C 0 s mm10.chr1 178716720 372 + 195471971 attcac-tgttcactcGATACTT-GAGCTAAACCTTAGAAAATCCTCT----CTAAGGTTCTCAGGCTCCAGAGTAAACAGGATTCTGAATAAA-----TAACACAGAGTATGAAGCCAGAGGGTCT----------------GG---TT---------------------------------------------------------TGAAGATTAAAATTAGGTGATGTTAAATTATTAAGAACATTACAGAAGTTTAA----------------TTTCATATGGGTCTGGCCAGTATTTTGTGTGGCTTTCC---TTTTCCCTAGGAACAGAGGCATTCAGGACACAAATGT-AAGAAGGAGCTCTGACTGAGGAAGGGAACAAGCCAGAGTAGG-AAGAGAGAGACAGGGTCCTGGG-AGAAATGCCAT----CTATAGTAGGTGTCAGGAAAGGGTGTTGGGAGCCCAGCTCTGAGAGGCT i mm10.chr1 I 2 I 350 s canFam3.chr7 36294172 467 + 80974532 ACTCAT-TCTTTATTTGATCCTCAGAACTTAACTTTAGAAAACTTTTTCGACCTACGATGTGCAAGCTCCTGGGTGAGCAGGATGTAGAATAAA-----TAGCACCAGAGCTGAAATCAGAGGAT-TTTGAGGTTTGACATGCAG---CTCTGCCTCTGCATCCTCATCTAGAAGACAAAGCCAGCACCTCCTCCTCTAGGGTGCTTTGATGATGAGGACT-GATAATTGTGAATGATAAAGCAATGTACCAATGGAGATTTGGTATGGACTCAGATAACATATCAGGA-AGAAGAAATATTGCATGGTTTTTCTTGTTCTCCTCATGCATGGTAACATCCAAAGCACAGATATGAAGGAGAAACTGTGAAT-ACGAAAGGATTAGGTGAGAGGGGGAAC-AGAAGGCCAGTGTCCTGGATTAATAACATCTATAGTAAAGATGGCACACAG----GCTTGTTGGGAGACTGGCTCTGAGATTCT i canFam3.chr7 C 0 C 0 a score=348697.000000 s hg38.chr1_KI270759v1_alt 115273 107 + 425601 TCATTGTATTTTGGTGCTGTGTTTATTGTCGTATGAACACTTGGGACAACTTGAATGTGTGGGAAGTAATAGGAAATATGTATAGGCTGGCCACCCAACAATGGGGA s panTro4.chr1 224865374 107 + 228333871 TCATTGTATTTTGGTGCTGTGTTTATTGTCCTATGAACACTTGGGACAACTTGAATGTGTGGGAAGTAATAGGAAATATGTATAGGCTGGCCACCCAACAATGGGGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226221668 107 - 229942017 TCATTGTATTTTGGTGCTGTGTTTATTGTCCTATGAACACTTGGGACAACTTGAATGTGTGGGAAGTAACAGGAAATATGTATAGGCTGGCCACCCAACAATGGGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140115692 107 - 143122389 TCATTGTATTTTGGTGCTGTGTTTATTGTCCTATGAACACTTGGGACAACTTGAATGTGTGGGAAGTAACAGGAACTATGTATAGGCTGGCCACCCAACAATGGGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16831871 107 - 229590362 TCACTGTACTTTGGTGCTGTGATTATTGTCCTGTGAACACTTGGGACAACTTGAATGTGTGGGAAGTAACAGGAAATATGCACAGGCTGGCCACGCAACAGTGGGGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223592177 107 - 227556264 TCACTGTACTTTGGTGCTGTGATTATTGTCCTGTGAACACTTGGGACAACTTGAATGTGTGGGAAGTAACAGGAAATATGCACAGGCTGGCCACGCAACAGTGGGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16643176 107 - 220367699 TCACTGTACTTTGGTGCTGTGATTATTGTCCTATGAACACTTGGGACAACTTGAATGTGTGGGAAGTAACAGGAAATATGCACAGGCTGGCCACGCAACAGTGGGGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82443394 107 + 85787240 TCACTGTACTTTGGTGCTGTGATTATTGTCCTATGAACGCTTGGGACAACTTGAATGTGTGGGAAGTAACAGGAAATATGCACAGGCTGGCCACGCAACAGTGGGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14124618 107 - 49578535 TGACTGTTCCTGGGTGCCATGTTTAGTGTCCCATGAACACTTGGGCCAACTCAAATGTGTGGGAAGTAACGAGAAATGTGTACAGACTGGCCACCCAGCAGTGAGGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36294639 103 + 80974532 -CCATGTGCCGTCCTACCATCCTTATTGTCCTGTCAACAGTTGGGCCTACTTGAGTGTATGGGAAGTAACGGGAAATGTGGTCA---tctccacctgtccatggggg i canFam3.chr7 C 0 I 173 e mm10.chr1 178717092 350 + 195471971 I a score=823292.000000 s hg38.chr1_KI270759v1_alt 115380 289 + 425601 CCATTG-----TGTTAGCCCTGTCTGGACATGAATCTCTGTGTTGTCCCAGACCATTAAGCAGGGAGTCCAAGCTCACTGGGAGGTCATGTCCATGCCATTTAGGGAGAGAATAAAGACAGGGAACAGTTATGAGGAAATGTCACAAGCACAGAAGCTCCTAGGAGGTTATTAGAACATGTTCAAAGGAGGCTGACTAAGAAGCC--ATGGCAT---------------------------------------------------ggcaggttcagtttggagaagagaaggactctggggtacatcatggatgccctcagctatctctcaggctattgtataaatg s panTro4.chr1 224865481 289 + 228333871 CCATTG-----TGTTAGCCCTGTCTGGACATGAATCTCTGTGTTGTCCCAGACCATTAAGCAGGGAGTCCAAGCTCACTGGGAGGTCATGTCCATGCCATTTAGGGAGAGAATAAAAACAGGGAACAGTTATGAGGAAATGTCACAAGCACAGAAGCTCCTAGGAGATTATTAGAACATGTTCAAAGGAGGCTGACTAAGAAGCC--ATGGCAT---------------------------------------------------GGCAGgttcagtttggagaagagaaggactctggggtacatcatggatgccctcagctatctctcaggctattgtataaatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226221775 289 - 229942017 CCATTG-----TGTTAGTGCTGTCTGGACATGAATCTCTGTGTTGTCCCAGACCATTAAGCAGGGAGTCCAAGCTCACTGGGAGGTCATGTCCATGCCATTTAGGGAGAGAATAAAGACAGGGAACAGTTATGAGGAAATGTCACAAGCACAGAAGCTCCTAGGAGGTTATTAGAACATGTCCAAAGGAGGCTGACTAAGAAGCC--ATGGCAT---------------------------------------------------GGCAGgttcagtttggaaaagagaaggactctgaggtacatcatggatgccgtcagctatctctcgggctattggataaatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140115799 285 - 143122389 CCATTG-----TGTTAGCCCTGTCTGGGCATGAATCTCTGTGTTGTCCCAGACCATTAAGCAGGGAGTCCAAGCTCACTGAGAGGTCATGTCCATGCCGTTTAGGGAGAGAATAAAGACAGGGAACAGTTATGAGGAAATGTCACAAGCACAGAAGCTCCTAGGAGGTTATTAGAACATGTCCAAAGGAGG----CTAAGAAGCC--ATGGCAT---------------------------------------------------GGCAGgttcagtttggagaagagaaggactctggggtacatcatggatgctgtcagctatctctcaggctatcgtataaatg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16831978 342 - 229590362 CCATTG-----TGTTAGCCCTGTCTGGACGTGAATCTCTTTATTGTCCCAGACCATGAAGCAGGGAGTCCAAGCTCACTGGGAGGTCATGTCCATGCCGTTTAGGGAGAGAATGAAGAGAGGGAACAGTTATGAGGACATGTCACAAGCACACAAGCTCCTAGGAGGTTattagaatgtgtccaaaggaggctgaccgagaagccatatggcatggcaggttcagtttggagaagagaaggacgtgtccaaaggaggctgaccgaggcaggttcagtttggagaagagaaggactctggggtacatcatggatgccctcagctatctctcaggctattgtataaatg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223592284 291 - 227556264 CCATTG-----TGTTAGCCCTGTCTGGACGTGAATCTCTTTATTGTCCCAGATCATGAAGCAGGGAGTCCAAGCTCACTGGGAGGTCATGTCCATGCTGTTTAGGGAGAGAATGAAGAGAGGGAACAGTTATGAGGACATGTCACAAGCACACAAGCTCCTAGGAGGTTATTAGAACGTGTCCAAAGGAGGCTGACCGAGAAGCCATATGGCAT---------------------------------------------------ggcaggttcagtttggagaagagaaggactctggggtacatcatggatgccctcagctatctctcaggctattgtataaatg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16643283 291 - 220367699 CCATTG-----TGTTAGCCCTGTCTGGACGTGAATCTCTTTATTGTCCTAGACCATGAAGCAGGGAGTCCAAGCTCACTGCGAGGTCATGTCCATGCCGTTTAGGGAGAGAATGAAGAGAGGGAACTGTTATGAGGACATGTCACAAGCACACAAGCTCCTAGGAGGTTATTAGAATGTGTCCAAAGGAGGCTGACCAAGAAGCCATATGGCAT---------------------------------------------------GGCAGGTTCAGTTTGGAGAAGAGAAGGACTCTGGGGTACATCATGGATGCCCTCAGCTATCTCTCGGGCTATTGTATAAATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82443501 291 + 85787240 CCATTG-----TGTTAGCCCTGTCTGGACATGAATCTCTTTATTGTCCCAGACCATGAAGCAGGGAGTCCAAGCTCACTGGGAGGTCATGTCCATGCCGTTTAGGGAAAGAATGAAGAGAGGGAACAGTTATGAGGACACGTCACAAGCACACAAGCTCCTAGGAGGTTATTAGAATGTGTCCAAAGGAGGCTGACCGAGAAGCCATATAGCAT---------------------------------------------------ggcaggttcagtttggagaagagaaggactctggggtacatcatagatgccctcagctatctctcgggttattgtataaatg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14124725 293 - 49578535 CCCTTGCGGGATGGGATCCCTGTCTGTACATGAATATCTGTGTTGTCCCAGCCCATTAAGCAGGGACTTCAAGCTCACTGGGAGGCCATGGCCATGCCACTTAGGGAGAGAATGAAGGGAGGGAACAGTTACGAGGAAATGTCACAAGCACAGGAGCTCCTAGGAGGCTATTTGAGCACGTCCAAAGGAGGGTCACCAAGACGCG--CTTTCAC---------------------------------------------------GGCAGGTTCCATTTGGAGAAGAGAAGGATTCTG-GGTGTACCATGGATGCTTGGGGCTCTCTCTTGGGCTGCTGTGTAAATG i calJac3.chr19 C 0 C 0 e mm10.chr1 178717092 350 + 195471971 I e canFam3.chr7 36294742 173 + 80974532 I a score=1738628.000000 s hg38.chr1_KI270759v1_alt 115669 590 + 425601 gagacttggttcgttctgtagagcaaccagttatgtaggcaaaggctaaa-------taacgagggagg-------aga------------cggacctcccagctcagaatga---agaacttg----caattccgatggcttcaggagagagtgagatttgtgtcc------ctaagggagatcaaagttatgttgagtaattacctggcctcgatcct----agagggaacattcaatgctcagatgggaattgacttccgacgtgcctttctaacctgaaattctttgaAAGTGGA--GTCTTCCGTTCAG-TTCCAGCCAGAGAATTTTACAGAAGGTTGACTGACTCACAAGGCAACCC---AG-AAGATTTGAAGCAGGAAGAAATAAGAAGTGA-GGGTTCCCAATTGGCAGAATTTAAGGAGAACATGAGTTCTCCTTAAATTCTTGGTGCGAGGAAACCAGCAGCGTCTTTGGAGCTGGGGAAAGGATGTGGAAATGAGGGGGGCCTGGGAACCTC-ATAGTACTGGACAA--GGTGTGCCTGAGGCCAGAGGTCAGGATATCAGAGGAGGATTTACGAACAAGCAAACACACAGCAGGGAAAGGAATAACAAATCACTAGC-----------------------------GAAAGC---------------------------CTAG---------GGT s panTro4.chr1 224865770 592 + 228333871 gagacttggttcattctgtagagcaaccaggtatgtaggcaaaggctaaa-------taacgagggagg-------aga------------cggacctcccagctcagaatga---agaacttg----caattccgatggcttcaggagagagtgagatttgtgtcc------ctaagggagatcaaagttatgttgagtaattacctggcctcgatcct----agagggaacaatcaatgctcagatgggaattgacttccgacgtgcctttctaacctgaaattctttgaAAGTGGAAAGTCTTCCGTTCAG-TTCCATCCAGAGAATTTTACAGAAGGTTGACTGACTCACAAAGCAACCC---AG-AAGATTTGAAGCAGGAAGAAATAAGAGGTGA-GGGTTCCCAATGGGCAGAATTTAAGGAGAACATGAGTTCTCCTTAAATTCTTGGTGCAAGGAAACCAGCAGCGTCTTTGGAGCTGGGGAAAGGATGTGGAAATGAGGGGGGCCTGGGAACCTC-ATAGTACTGGACAA--GGTGTGCCTGAGGCCAGAGGTCAGGATATCAGAGGAGGGTTTACGAACAAGCAAACACACAGCAGGGAAAGGAATAACAAATCACTAGC-----------------------------GAAAGC---------------------------CTAG---------GGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226222064 595 - 229942017 gagacttggttcgttctgtagagcaaccaggtacgtaggcaaaggctaaa-------taacgacggagg-------aga------------cggacctcccagctcagaatga---agaacttg----caattccaatggctttaggagagagtgagatttgtgtcc------ctaagggagatcaaagttatgttgagtaattacctggcctcgatcct----agaggggacattcaatgctcagatgggcattgacttccgatgtgcctttctaacctgaaattctttgaAAGTGGAAAGTCTTCCATTCAT-TTCCATCCAGAGAATTTTACAGAAGGTTGACTGACTCACAGAGCAACCCAGAAG-AAGATTTGAAGCAGGAAGAGATAAGAGGTGA-GGGTTCCCAATGGGCAGAATTTAAGGAGAACATGAATTCTCCTTAAATTCTTGGTGCAAGGAAACCAGCAGCATCTTTGGAGCTGGGGAAAGGATGTGGAAATGAGGGGGGCCTGGGAACCTC-ATAGTACTGGACAA--GGTGTGCCTGAGGCCAGAGGTCAGGGTATCAGAGGAGGATTTACAAACAAGCAAACACACAGCAGGGAAAGGAATAACAAATCACTAGT-----------------------------GAAAGC---------------------------CTAG---------GGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140116084 595 - 143122389 gagacttggttcgttctgtagagcaaccaggtatgtaggcagaggctaaa-------taacgacggagg-------aga------------tggacctcctagctcagaatga---agaacttg----caattccgatggcttcagcagagagtgagatttgtgtcc------ctaagggagatcaaagttatgttgattaattacctggccttgatcct----agagggaacattcaatgcgcagatgggaattgacttctgatgtgcctttctaacctgaaattctttgaATGTGGAAAGTCTTCCGTTCAG-TTCCATCCAGAGAATTTTACAGAAGGTTGACTGACTCACAAAGCAACCCAGAAG-AAGATTTGAAGCAGGAAGAGATAAGAGGTGA-GGGTTCCCAATGGGCAGAATTTAAGGAGAACATGAGTTCTCCTTAAATTCTTGGTGCAAGGAAAGCAGCAGTGTCTCTGGAGCTGGGGAAAGGATGTGGAAATGAGGGGGGCCTGGGAACCTC-ATAGTACTGGATAA--GGTGTGCCTGAGGCCAGAGGTCAGGATATCAGAGGAGGATTTACGAACACGCAAACACACAGCAGGGAAAGGAATAACAAATCACTAGT-----------------------------GAAAGC---------------------------CTAG---------GGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16832320 584 - 229590362 gagacttggttggttcggtagagcagccaggtatgtaggcaaaggctaaa-------taatga-ggagg-------aga------------cggacctcccagcttagaatga---agaacttg----caattccaatggcttcaggagagagtgagatttgtgtcc------gtaagggagatcaaagctatgttga------------tgtcgatcct----ggagagaacattcaatgctcagatgggaattgacttcttttgtgcctttctaacctgaaattctttgaATGTGGAAAGTCTTCCGTTCAG-TTCCATCCAGAGAATTTTCCAGAAGGTTGACTGACTCACAAAGTAACCCCAAAG-AAGATTTGAAGCAGGAAGAAATAAGAGGTGA-GGGCTCCCAATGGGCAGAATTTAAGGGGAACTCAGGTTCTCCTTAAATTCTTGGTGCAAGGAAACCAGCAGCGTGTTTGGAGCTGGGGAAAGGATGTGGAAATGAGACGGGCCTGGGAACCTC-GCAGTGCTGGACGAGTGGTGTGCCTGAGGCCAGAGGTCTGGAGATCAGGGGAGGATTTACAAACAAGCCCACACACAGCAGGGAAAGGAAGGACAAATCACTAGT-----------------------------GAAAGC---------------------------CTAG---------GGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223592575 584 - 227556264 gagacttggttggttcggtagagcagccaggtatgtaggcaaaggctaaa-------taatga-ggagg-------aga------------cggacctcccagcttagaatga---agaacttg----caattccaatggcttcaggagagagtgagatttgtgtcc------gtaagggagatcaaagctatgttga------------tgtcgatcct----ggagggaacattcaatgctcagatgggaattgacttctgatgtgcctttctaacctgaaattctttgaATGTGGAAAGTCTTCCGTTCAG-TTCCATCCAGAGAATTTTCCAGAAGGTTGACTGACTCACAAAGTAACCCCAAAG-AAGATTTGAAGCAGGAAGAAATAAGAGGTGA-GGGTTCCCAATGGGCAGAATTTAAGGGGAACTCAGGTTCTCCTTAAATTCTTGGTGCAAGGAAACCAGCAGCGTGTTTGGAGCTGGGGAAAGGATGTGGAAATGAGACGGGCCTGGGAACCTC-GCAGTGCTGGACAAGTGGTGTGCCTGAGGCCAGAGGTCTGGAGATCAGGGGAGGATTTACAAACAAGCACACACACAGCAGGGACAGGAAGGACAAATCACTAGT-----------------------------GAAAGC---------------------------CTAG---------GGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16643574 584 - 220367699 GAGACTTGGTTGGTTCGGTAGAGCAGCCAGGTATGTAGGCAAAGGCTAAA-------TAACGA-GGAGG-------AGA------------CGGACCTCCCAGCTTAGAATGA---AGAGCTTG----CAATTCCAATGGCTTCAGGAGAGAGTGAGATTTGTGTCC------GTAAGGGAGATCAAAGTTATGTTGA------------TGTCGATCCT----GGAGGGAACATTCAATGCTCAGATGGGAATTGACTTCTGATGTGCCTTTCTAACCTGAAATTCTTTGAATGTGGAAAGTCTTCCACTCAG-TTCCATCCAGAGAATTTTACAGAAGGTTGACTGACTCACAAAGTAACCCCAAAG-AAGATGTGAAGCAGGAAGAAATAAGAGGTGA-GGGTTCCCAATAGGCAGAATTTAAGGGGAACTCAGGTTCTCCTTAAATTCTTGGTGCAAGGAAACCAGCAGCGTCTTTGGAGCTGGGGAAAGGATGTGGAAATGAGACGGGCCTGGGAACCTC-GCAGTGCTGGACGAGTGGTGTGCCTGAGGCCAGAGGTCTGGAGATCAGGGGAGGatttacaaacaagcaaacacacagCAGGGAAAGGAAGGACAAATCACTAGT-----------------------------GAAAGC---------------------------CTAG---------GGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82443792 584 + 85787240 gagacttggttggttcagtagaacagccaggtatgtgggcaaaggctaaa-------taacga-ggagg-------aga------------cggacctcccagctcagaatga---agaacttg----caattccaatggcttcaggagagaatgaaatttgtgtcc------ataagggagatcaaagctatgttga------------tgtcgatcct----ggagggaacattcaatgctcagatgggaattgacttctgatgtgcctttctaacctgaaattctttgaGTGTGGAAAGTCTTCCGTTCAG-TTCCATCCAGAGAATTTTACAGAAGGTTGACTGACTCACAAAGTAACCCCAAAG-AAGATTTGAAGCAGGAAGAAATAAGAGGTGA-GGGTTCCCAATGGGCAGAATTTAAGGGGAACTCAGGTTCTCCTTAAATTCTAGGTGCAAGGAAACCAGCAGCATCTTTGGAGCTGGGGAAAGGATGTGGAAATGAGACAGGCCTGGGAACCTCAGTAGTGCTGGACGAGTGGTGTGCCTGAGGCCAGAGGTCAGGAGATCAGGGGAGGATTTACAAACAAGCACACACACAGCAGGGAAAGGAATGACAAATCACT-GT-----------------------------GAAAGC---------------------------CTAG---------GGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14125018 574 - 49578535 GAGATTTGGTTGGTTTTGTTGAGCAGCCAAGTATGTAGGCAA------------------------AGG-------AGA------------CGCATC-CCCAGCTCAGAATGC---AGAA--TG----CAATTCCGATGGTTTCAGGAGAAAGTGAGATTCGTGTCC------CTGAGTGAGATGAAAGTTATGTTGAGTAATGACCTGGCCTTGGTACC----AGAAGGAACATTCAGTGCTCAGATGGGAATTGACTGCTGATGTGCCTTTCTAACCTGAAATTCTTTGAATGTGGAAAACCTTCCATTCAG-TTCCAGCCAGAGAATTTTACGGAAGGCTGACTGACTCACAAGACAACCC-AGAA-AAAATCTAAAGCAGGAGGAAAAAAGAGGCGA-GGGTTCCCCTTGGGCAGAATTGAAGGAGAACAGGAG-----------TTCCAGGTGCAAGGAAGT---------------------------GACGTGGGAATGAGATGTG-CTGGGAACCTG-AGAGTGTTGGGCAAGCAGTGTGCCCGAGGCTGGAGTTCAGGGTGTCA--GGAGGATTTACAAACAAGCAAGCAAACGTCAGAGAAAGGAATGGCGAAGCGCTAGCCAAGCGTCGGTGGCACGGGGATACTGAGGCAAAGC--------------------------GCTGGCAAAGCGTCGGT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36294915 652 + 80974532 GGGATTTGGTTGGTTATATAAAACACCCAAGTAAGTGGGCAAAGGCTGCAGAAAACCTAATGATGGAGTTCAGCTCAGACTCCATCCAGCTCAGCTCTCCCAGTTCAGAATAAAAGAAAATTTGCAGCCAGTTCACACTGCCGTGGGGGAGAGTGAGGTCTTGGTCTTCATCACTGAGGGAGACCAAGTTTACATTGGGTGACTGCCTGGCCTTGATGCTGCAGAGGAAGGATATTCACTGCCCAGATGGGGGTTGACCTCCAGTGCACCTTCCTGACCCAAAATATTTTGAATGTCAGAAGCC-TCAGCCCAGACTCCATCCAGAGACTTTTACAGA----TCAATTATGCACAGAAAACCCCAAAAGCAGGATTTGAAGCAGAAGGAGATCAGAGGTGAGGGGCTCCTGATGGTCAGTGTTAAGGGAGAACAAATGT----------TTCCTGCCACCAGGAGACCAGCAGTG-CTTTAGAGC-AGGGACAGCATGTGGACACGAGGTGGG-CTGGGAAGGCC-TGCGTGCCAGACAAATGGTGAGCTTGAGGCCGGCTTTCAGTTAATCAAAAGAGCATTTCCAAACAAACAAGAGCACACCAGGGGAAGGAATGGCAAATGATGGGC-----------------------------AAAGGCGGCCTGCTCTGAGATGTGCTTGCACAGCCAG---------GGT i canFam3.chr7 I 173 I 1 e mm10.chr1 178717092 350 + 195471971 I a score=325931.000000 s hg38.chr1_KI270759v1_alt 116259 109 + 425601 GGAAGGGAGATACTGAGGCAAAACCCAAAATGTATGGGCCAGTGATGTCAACTG-GGGCAGGCTCTGCAGGTGATGCTAGCAGCAAACAAAGACTTGA--AA------CTCATGACTT s panTro4.chr1 224866362 109 + 228333871 GGAAGGGAGACACTGAGGCAAAACCTAAAATGTATGGGCCAGTGATGTCAACTG-GGGCAGGCTCTGCAGGTGATGCTAGCAGCAAACAAAGACTTGA--AA------CTCACGACTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226222659 109 - 229942017 GGAAGGGAGATACTGAGGCAAAACCTAAAATGTATGGGCCAGTGATGTCAACTG-GGGCAGGCTCTGCAGGTGATGCTAGCAGCAAACAAAGACTTGA--AA------CTCACGACTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140116679 109 - 143122389 GGAAGGGAGATACTGAGGCAAATCCTAAAATGTATGGGCCAGTGATATCAACAA-GGACAGGCTCTGCAGGTGATGCTAGCAGCAAACAAAGACGTGA--AA------CTCATGACTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16832904 109 - 229590362 GGAAGGGAGATACTGAGGCAAAACCTAAAAGGTACGGGCCAGTGATGTCAACTG-GGGCAGGCCCTGCAGGTGATGCTAGCGGCAAACAAAGACTTGA--AA------CTCACTTCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223593159 109 - 227556264 GGAAGGGAGATACTGAGGCAAAACCTAAAAGGTACGGGCCAGTGATGTCAACTG-GGGCAGGCCCTGCAGGTGATGCTAGCGGCAAACAAAGACTTGA--AA------CTCACTTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16644158 109 - 220367699 GGAAGGGAGATACTGAGGCAAAACCTAAAAGGTACGGGCCAGTGATGTCAACTG-GGGCAGGCCCTGCAGGTGATGCTAGCGGCAAACAAAGACTTGA--AA------CTCACTTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82444376 104 + 85787240 GGAAGGGAGATACTGAGGCAAAACCTAAAAGGTATGGGCCAGTGATGTCAACTG-GGGCAGGCCCTGCAGGTGATGCTAGCGG----CAAAGACTTGA--AA------CTC-CTTCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14125592 107 - 49578535 GGCACGGGGGTACTGAGGCACAACCTGCACTGCATGAGCTGATGATG-CAGCT--GGGCGGGCCGTGCCTGTGACGCAGGCAGCAAACCAGTGCTTAA--AA------CCCATGACTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178717442 108 + 195471971 GGAGAATAGGTGCTGGG----CACCTATGATGAACGGGCCAGTGACAATGGCTG-GGA---GCTCTGTAGATGATGATAACAGTGAGCAAAGACTCCA--AAAGATTGCTCATTACCT i mm10.chr1 I 350 I 264 s canFam3.chr7 36295568 104 + 80974532 AGAATGGAGGCAGTGGGGTG-AACCCAGAGTGGACATGCCATTGCTGCTGGTTGCGAGGAGGGGCTGCAGATGATGTTCGCCATAAACAAAGACTGGACCAG------GTT------- i canFam3.chr7 I 1 C 0 a score=185817.000000 s hg38.chr1_KI270759v1_alt 116368 56 + 425601 CAGAACGACAAGGGCTTGCAGTATGAGCTTTCAAAGAGCTGGAAAGGATCCCTAAG s panTro4.chr1 224866471 56 + 228333871 CAGAACGACAAGGGCTTGCAGTATGAGCTTTCAAAGAGCTGGAAAGGATCCCTAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226222768 56 - 229942017 CAGAACGACAAGGGCTTGTAGTATGAGCTTTCAAAGAGCTGGAAAGGATCCCTAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140116788 56 - 143122389 CAGAACGACAAGGGCTTGCAGTGTGAGCTTTCAAAGAGCTGGAAAGGAACCCTAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16833013 56 - 229590362 CAGCATGACAAGGGCTTGCAGTAGGAGCTTTCCAAGAGCTGGAAAGGATCCCTAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223593268 56 - 227556264 CAGCATGACAAGGGCTTGCAGTAGGAGCTTTCCAAGAGCTGAAAAGGATCCCTAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16644267 56 - 220367699 CAGCATGACAAGGGCTTGCAGTAGGAGCTTTCCAAGAGCTGGAAAGAATCCCTAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82444480 56 + 85787240 CAGCATGACAAGGGCTTGCAGTAGGAGCTTTCCAAGAGCTGGAAAGGATCCCTAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14125699 56 - 49578535 CAGAGTGACGAGGGCTTGTGATGTGAGCTTGCAAAGAGCTGGAAAGGATCCGTAAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36295672 55 + 80974532 CAGATTGCCG-GGGCTTGTGGTGTGAGCTGTCAGAGGGCGGGAAAGGATCCATAGG i canFam3.chr7 C 0 C 0 e mm10.chr1 178717550 264 + 195471971 I a score=1161039.000000 s hg38.chr1_KI270759v1_alt 116424 367 + 425601 GCTCCCCAAATCTTTACTATTACTTTCTGTGCAGTGAACGCTGATAGTACTTGGAGCTTCATGGTATAA-GCATTAAAAGTATGTGGTTTGTATTCAAAGGGTTTACAATGTACAG--TGGGAAACAAGTACCATGTGAAAAAGAACAATTCTTT---------------------------CTATAGATTTCCCCCC-CACCCTTTACTCATTACCATATTTTGCCATGTTATTCTCATCATTATTGATGAGAACTATTATTAGCTGGG-CTTTCCCACCTCCCAGCGAGGGAGGCAGCATATTAATAACCCCCCTGTCACTGAGGGGCACCCAAAGCAGAAGTGTGACTGACTGGCT-CCAGGCTCATCCTGTCAAGAGGCAGAACCAGGGATGTACC s panTro4.chr1 224866527 367 + 228333871 GCTCCCCAAATCTTTACTATTACTTTCTGTGCAGTGAACGCTGATAGTACTTGGAGCTTCATGGTATAA-GCATTAAAAGTACGTGGTTTGTATTCAAAGGGTTTACAATGTACAG--TGGGAAACAAGTACCATGTGAAAAAGAACACTTCTTT---------------------------CTATAGATTTTCCCCC-CACCCTTTACTCATTACCATATTTTGCCATGTTATTCTCATCATTATTGATGAGAACTATTATTAGCTGGG-CTTTCCCACCTCCCAGCGAGGGAGGCAGCATATTAATAACCCCCCTGTCACCGAGGGGCACCCAAAGCAGAAGTGTGACTGACTGGCT-CCAGGCTCATCCTGTCAAGAGGCAGAACCAGGGATGTACC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226222824 368 - 229942017 GCTCCCCAAATCTTTACTATTACTTTCTGTGCAGTGAACGCTGATAGCACTTGGTGCTTCATGGTATAA-GCATTAAAAGTACATAGTTTGTATTCAAAGGGTTTACAATGTATAG--TGGAAAACAAGTACCATGTGAAAAAGAACAATTCTTT---------------------------CTATAGATTTCCCCCC-CACCCTTTACTCATTACCATATTTTGCCATGTTATTCTCATCATTATTGATGAGAACTATTATTAGCTGGG-CTTTTCCACCTCCTAACGAGGGAGGCAGCATATTAATAACCCCCCTGTCACTGAGGGGCACCCAAAGCAGAAGTGTGAATGACTGGCTCCCAGGCTCATACTGTCAAGAGGCAGAACCAGGGATGCCCC i ponAbe2.chr1 C 0 I 487 s nomLeu3.chr5 140116844 365 - 143122389 GCTCCCCAAATCTTTACTGTTACTTTCTGTGCAGTGAACGCTGATAGCACTTGGAGCTTCATGGTATAA-GCATTAAAAGTACATGGTTTGTATTCAAAGGGTTTACGATGTATAG--TGGGAAAAAAGTACCATGTGAAAAAGAACAATTCTTT---------------------------CTATAGATTCCCCCCC---CTCTTTACTCATTACCATATTTTACCCTGTTATTCTCATCATTATTGATGAGAACTATTATTGGCTGGG-CTTTCCCACCTCCCAGTGAGGAAGGCAGCATATTAATAACCCCCCTGTCACTGAGGGGCACCCAAAGCAGAAGTGTGAATGACTGGCT-CCAGGCTCATGCTGTCAAGAGGCAGAACCAGGGATGTACC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16833069 365 - 229590362 GCTCCCCAAATCTTCATTATTACTTTCTGTGTAGTGAACGCTGACAGCACTTGGAGCTTCATGGTATAA-GCATTAAAAGTACATGGTTTGTATTCAAAGGGTTTATACTGTACAG--TGGGAAACAAGTGCCAGGTGAAAAAGAACAA-TCTTT---------------------------CTATGGATTTTCCCCC-CACTCTTTACTGGTGACCATATTTTGCCCTGTTATTCTCATCATTATTGATGAGAACTATTGTTAGCTGGG-CTTTCCCACCTCCCAGCGAGGGAGGCAGCATATTAATAACCCCCCTGTCACTGA-GGGCACCCAAAGCAGAAGTGTGAATGACTGGCT-TCAGGCCCATACTGTCAAGAGACAGAACCAGGGATGTATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223593324 365 - 227556264 GCTCCCCAAATCTTCATTATTACTTTCTGTGTAGTGAACGCTGACAGCACTTGGAGCTTCATGGTATAA-GCATTAAAAGTACATGGTTTGTATTCAAAGGGTTTATACTGTACAG--TGGGAAACAAGTGCCAGGTGAAAAAGAACAA-TCTTT---------------------------CTATGGATTTTCCCCC-CACTCTTTACTGGTGACCATATTTTGCCCTGTTATTCTCATCATTATTGATGAGAACTATTGTTAGCTGGG-CTTTCCCACCTCCCAGCGAGGGAGGCAGCATATTAATAACCCCCCTGTCACTGA-GGGCACCCAAAGCAGAAGTGTGAATGACTGGCT-TCAGGCCCATACTGTCAAGAGACAGAACCAGGGATGTATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16644323 364 - 220367699 GCTCCCCAAATCTTCATTATTACTTTCTGTGTGGTGAACGCTGACAGCACTTGGAGCTTCATGGTATAA-GCATTAAAAGTACATGGTTTGTATTCAAAGGGTTTATAGTGTACAG--TGGGAAGCAAGTGCCAGGTGAAAAAGAACAA-TCTTT----------------------------TATGGATTTTCCCCC-CGCTCTTTACTCGTGACCATATTTTGCCCTGTTATTCTCATCATTATTGATGAGAACTATTGTTAGCTGGG-CTTTCCCACCTCCCAGCGAGGGAGGCAGCCTATTAATAACCCCCCTGTCACTGA-GGGCACCCAAAGCAGAAGTGTGAATGACTGGCT-TCAGGCCCATACTGTCAAGAGACAGAACCAGGGATGTATC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82444536 365 + 85787240 GCTCCCCAAATCTTCATTATTACTTTCTGTGTAGTGAATGCTGATAGCACTTGGAGCTTCATGGTATAA-GCATTAAAAGTACATGGTTTGTATTCAAAGGGTTTATACTGTACAG--TGGGAAACAAGTACCAGGTGAAAAAGAACAA-TCTTT---------------------------CCATGGATTTTTCCCC-CACTCTTTACTCATGACCATAGTTTGCCCTGTTATTCTCATCATTATTGATGACAACTATTGTTAGCTGGG-CTTTCCCACCTCCCAGTGAGGGAGGCAACATATTAATAACCGCCCTGTCACTGA-GGGTACCCAAAGCGGAAGTGTGAATGACTGGCT-CCAGGCCCATACTGTCAAGAGACAGAACCAGGGATGTATC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14125755 355 - 49578535 TCT-CCCAAAGCTTTATGATGACTTTCTTTGCAGTGAACGCTGATAGCACTCGGAGCTGAATGGGATGA-GCATCAAAAGCCCATGGTCTGTATTCAGA-GGTTTACAGTGTACAG--TGGGAAAC-AGTACCGTGTG-AAAAGAATGA-TCTTT---------------------------ACGTATATCCGCCCCC-----CTTTACTCATGCCCATGTCTTGCCCTG---TTCTCATCATCGATGATGAGGCCTATTCTTAGCTGGGACGTTCTCACCTCCCAACGAGAGAGGCGGCGTATTAATAACCTCCCTGTCGCTGA-GGGCACCGAAAGCTGAAGTGTGAATGACCGGCT-CCAGGCCCGTCATGTCAAGAGGCAGACCCAGGAGTGTCTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178717814 294 + 195471971 gctccccctggccccCTTAATATCTCTTCTGCTGTGAATCCTGATAGCACATGGAGCTTAATGGTATGA-GC----------------TTACCTTCACAGGGCTTATAGTGTACAG--AAGGACAG-CGCACCATG-GAAAAAGCACAT---------------------------------GAGCACACTCTTCGCT-CATTCCTTACCCGTCACCCTGGCTCGCCAT-------------------------------------TGGG-TTTTGCTTCCTTCCAGCAAGTAAGGATGCATATTAACAACTTGTCAGTCATGGGCTGGCACCTACAGCAGA---GAGAGAGATCTATT-CGA---------TAGTGAGAGACATAACCAGGGATCTATC i mm10.chr1 I 264 I 412 s canFam3.chr7 36295727 355 + 80974532 GCTGCCTAAATCCT---TATTACTTTCTTTGTGGTGAATGCTGATAGCATTTGGAGCTTAATGGTTTAAGGCATTCAAAGTGCGTGGTTTGTGTTTAAAGCATTTATAATGTACAGCATGGGGAGAAAGTATGATGGGAGAAAGAATAA-TGTTTTATACCCACACGCACACACGTACATACACGCATATTCTCCTTCACACCCTTT--------CCCTTGTTGGCCCTGCTGCTCTCACCAACAA----------------TAGCTGAG-CTTCCACCCCTCCCAG---------------AGTGACAGCCTCCCTCTTACTGATGGGAACCTAGAGCAGAAGATTGAGTGACTAGCT-CAAGCTCCAGAAGGTTAAGCCTCAGAACCAGGGATGTGGC i canFam3.chr7 C 0 C 0 a score=1174667.000000 s hg38.chr1_KI270759v1_alt 116791 383 + 425601 TGACA-------GTTAGGTCCCCAAACGTCCATGTGATAAGCCAAAACCTGCCCAGCTTATGCTGTCAGACAGTCAACTGAGTTCAA----AGAGCCTTTTGGTTTTAGCTGAAGCAAAGCTGTGTAAGGGGATGGTAATGACAGCTTTTGATAAG-----------------------------------------------------------------------------TGTCTGTCCTCATAGGGGTTT-GGGGCAGAGTCAGCTCCTACACCTCCAATCTGTGCTCACCAC-TTTCCACTCTTCCTGCTTGACTGCAATGGAGAGAGAGTCCTCTGAGTCTGCGGGGCCCTGGAACTCTCCTA-TAGCTCCAAGTCAAGACACAGGGGTGGCCTGCTTTCAGGAAGCTGTCCTGggctgggcatggtggctcacgcctgtaatcccagtactttgggagaccaaggtg s panTro4.chr1 224866894 383 + 228333871 TGACA-------TTTAGGTCCCCAAACGTCCATGTGATAAGCCAAAACCTGCCCAGCTTATGCTGTCAGACAGTCAACTGAGTTCAA----AGAGCCTTTTGGTTTTAGCTGAAGCAAAGCTGTGTAAGGGGATGGTAATGACAGCTTTTGATAAG-----------------------------------------------------------------------------TGTCTGTCCTCATAGGGGTTT-GGGGCAGAGTCAGCTCCTACACCTCCAATCTGTGCTCACCAC-TTTCCACTCTTCCTGCTTGACTGCAATGGAGAGAGAGTCCTCTGAGTCTGCGGGGCCCTGGAACTCTCCTA-TAGCTCCAAGTCAAGACACAGGGGTGGCCTGCTTTCAGGAAGCTGTCCTGggctgggcgcggtggctcacgcctgtaatcccagtactttgggagaccaaggtg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226223679 380 - 229942017 TGACA--------TTAGGTCCCCAAACGTGCATGTGATAAGCCAAAACCTGCCCAGCTTATGCTGTCAGACAGTCAACTGAGTTCAA----TGGGCCTTTTGGTTTTAGCTGAAGCAAAGCTGTGTAAGGGGATGGTAATGACAGCTTTTGATAAT-----------------------------------------------------------------------------TGTCTGTCCTCATAGGGGTTT-GGGGCAGAGTCAGCTCCTACACCTCCAATC--TGCTCACCAC-TTTCAACTCTTCCTGCTTGACTGCAATGGAGACATAGTCCTCTGGGTCTGCAGGGTCCTGGAACTCTCCTA-TAGCTCCAAGTCAAGACACAAGGGTGGCCTGCTCTCAGGAAGCTGTCCTGagctgggcgtggtggctcacgactgtaatcccagtactttgggagaccaaggtg i ponAbe2.chr1 I 487 C 0 s nomLeu3.chr5 140117209 383 - 143122389 TGACA-------TTTAGATCCCCAGACATCCATGTGATAAGCCAAAACCTGCCCAGCTTATGCTGTCAGACAGTCAACTGAGTTCAA----AGAGCCTTTTGGTTTTAGCTGAAGCAAAGCTGTGTAAGGGGATGGTAATAACAGCTTTTGATAAG-----------------------------------------------------------------------------TGTCTGTCCTCATAGGGGTTT-GGGGCAGAGTCAGCTCCTACACCTCCAATCTGTGCTCACCAC-TTTCAACTCTTCCTGCTTGACTGCAATGGAGGCATAGTCCTCTCAGTCTGCAGGGCCCTAGAACTCTCCTA-TAGCTCCAAGTCAAGACACGAGGGTGGCCTGCTCTCAGGAAGCTGTCCTGggctgggcgtggtggctcacgcctgtaatcccagtactttgggagaccaaggtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16833434 371 - 229590362 TGACA-------TGTAGATCCCCAAATGTCCATGTGATAAGCCAAAACCTGCCCAGCTTATGCTGT----CAGTAAACTGAGTTCAA----AGAGCCTTTTGGTTTTAGCTGAAGCAAAGCTGTGTAAGGTGATGGTAATGACAGCTTTTGATAAG-----------------------------------------------------------------------------TGTCTGTCCTCATAGGGGTTTGGGGGCAGAGTCAGCTCCTACACCTCCAGCCTGTGCTCACCAC-TTTCAACTCTTCCTGCTTGACTGCAATGGAGACATAGTCCTCTGAGTCTGCAGGGCCCTGGAACTCTCCTG-CAGCTCCAAGTCAAGACACAAGGGTGGCCTGCTCTCAGGAAGCTGTCCTGggctgggcgtggtggctcac---------cccagtactttgggagaccaaagtg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223593689 371 - 227556264 TGACA-------TGTAGATCCCCAAATGTCCATGTGATAAGCCAAAACCTGCCCAGCTTATGCTGT----CAGTAAACTGAGTTCAA----AGAGCCTTTTGGTTTTAGCTGAAGCAAAGCTGTGTAAGGTGATGGTAATGACAGCTTTTGATAAG-----------------------------------------------------------------------------TGTCTGTCCTCATAGGGGTTTGGGGGCAGAGTCAGCTCCTACACCTCCAGCCTGTGCTCACCAC-TTTCAACTCTTCCTGCTTGACTGCAATGGAGACATAGTCCTCTGAGTCTGCAGGGCCCTGGAACTCTCCTG-CAGCTCCGAGTCAAGACACAAGGGTGGCCTGCTCTCAGGAAGCTGTCCTGggctgggcgtggtggctcac---------cccagtactttgggagaccaaagtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16644687 371 - 220367699 TGACA-------TGTAGATCCCCAAATGTCCATGTGATAAGCCAAAACCTGCCCAGCTTATGCTGT----CAGTAAACTGAGTTCAA----AGAGCCTTTTGGTTTTAGCTGAAGCAAAGCTGTGTAAGGTGATGGTAATGACagcttttgataag-----------------------------------------------------------------------------tgtctgtccTCATAGGGGTTTGGGGGCAGAGTCAGCTCCTACACCTCCAGCCTGTGCTCACCAC-TTTCAGCTCTTCCTGCTTGGCTGCAATGGAGACATAGTCCTCTGAGTCTGCAGGGCCCTGGAACTCTCCTG-CAGCTCCAAGTCAAGACACAAGGGTGGCCTGCTCTCAGgaagctgtcctgggctgggcgtggtggctcac---------cccagtactttgggagaccaaagtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82444901 371 + 85787240 TGACA-------TTTAGATCCCCAAATGTCCATGTGATAAGCCAAAACCTGCCCAGCTTGTGCTGT----CAGTAAACTGAGTTCAA----AGAGCCTTTTGGTTTTAGCTGAAGCAGAGCTGTGTAAGGTGATGGTAATGACAGCTTTTGATAAG-----------------------------------------------------------------------------TGTCTGTCCTCATAGGGGTTTGGGGGCAGAGTCAGCTCCTACACCTCCAACCTGTGCTTACCAC-TTTCAACTCTTCCTGCTTGACTGCAATGGAGACATAGTCCTCTGAGTCTGCAGGGCCCTGGAACTCTCCTG-CAGCTCCAAGTCAAGACACAAGGGTGGCCTGCTCTCAGGAAGCTGTCCTGggctgggcgtggtggctcac---------cccagtactttgggagaccaaagtg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14126110 355 - 49578535 TGACCC-----CTTTACATCCTCTGATGTCCGTGTGATAAGCCAAAACCTGTCCAGCTTATGTTGTCAGACTGTAAACTGAGTTCGA----AGAGCCTTTTGGTTTTAGCTGACGCGGAGCTGTGTAAGGTGACGGTCATGACAGATTTTGATAAG-----------------------------------------------------------------------------TG--TGTCCTCATAGGGGTGTGGGGGCGGAGTCGGCTCCTACACCTCCAATCTGTGCTCACCAC-TTTCAGCTCT-----------TGCAGCGGAGACCTAGTCCTCTGAGCGTGCAGGGCCCTGG-------------------AGTCAGGGCACAAGGGTGGCCTGCTCTCAGGAAGCTGTCCTGggccaggcatgctgacttacacctgtaattccagcactttgggagaccaaggtg i calJac3.chr19 C 0 C 0 s canFam3.chr7 36296082 433 + 80974532 -----TCAGTGCTGTGGATCCCCAAAGGTCCATGTGATACGTCAAAACCAGCCCAGTTTATGTTGTCAGACAGTTGATGGAGTTCAGAGCCAGGGGTTTTCTGCTTCAGGTAAAGTAAAGCTGCGTAAAGCGATGGTATAGGTGGCCTTTGGTAGGGGTGAAATCTGGATCCGTCACTGGTGCCAAAATTGGAAACACTCTAGGGGTCATGGTTTCCTTTCGAAGCCTGAGGATGTCTTTCCACCTGGGCATTTGGGGGCAGAGTCAGCTCCTGTGCCTCAAACCTGCGCTCATCACTTTTCAACTCCTG---------TGAGACAGTGAGATAG--ATCTGAGTCTGCAGGGTCCTGAAACTCCCCTTCCAGCTGTAAGT---GACA-GAGGGTGGCCTGCTCTCTGGAAGCTGTGCAGGAC------------ATCAT---------TTCATCATTTTACGGGGCAGAAGTG i canFam3.chr7 C 0 I 64 e mm10.chr1 178718108 412 + 195471971 I a score=209101.000000 s hg38.chr1_KI270759v1_alt 117174 71 + 425601 ggtggatcactagagaccaggagttcaagaccagcctggccaacatggtgagaccccgtctctactaaaaa s panTro4.chr1 224867277 71 + 228333871 ggtggatcacttgagaccaggagtttcagaccagcctggccaacatggtgagaccccgtctctactaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226224059 70 - 229942017 gatggatcacttgagaccaggagttcaagaccagcctggccaacatggtgag-ccccgactctactaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140117592 71 - 143122389 gatggatcacttgagaccaggagttcaagaccagcctggccaacgtggtgagacgccgtctctattaaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16833805 71 - 229590362 gatggatcacttgaggccaggagttcaagaccagtctggccaacatagtgagaccccgtctctactaaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223594060 71 - 227556264 gatggatcacttgaggccaggagttcaagaccagtctggccaacatagtgagaccccgtctctactaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16645058 71 - 220367699 gatggatcacttgaggccaggagttcaagaccagtctggccaacatagtgagaccccgtctctactaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82445272 71 + 85787240 gatggatcacttgaggccaggagttcaagaccagtctggccgacatagtgagaccctgtctctactaaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14126465 71 - 49578535 gatggaacccatgaggccaggagttcaagaccagcctggccaacatgacgagtccccatctctactaaaaa i calJac3.chr19 C 0 I 278 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296515 64 + 80974532 I a score=264124.000000 s hg38.chr1_KI270759v1_alt 117245 120 + 425601 tacaaaaattagctgggcatggtggtgcatgtctataatcccagctacttgggaggctaagacatgagaatcacttgaattaggaaggtg-gggtttcggtgagccgagatggcgccactg s panTro4.chr1 224867348 111 + 228333871 tac-aaaattagctgggcatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng-------attcatgagaatc-cttgaattaggaaggtg-gggtttcggtgagccaagatggtgccactg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226224129 120 - 229942017 tacaaaaattagctgggcgtggtggtgcacatctataatcccagctacttgggaggctaagacatgagaatcacttgaattaggaaggtg-gggttttggtgagccgagatgacaccactg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140117663 120 - 143122389 tacaaaaattagctgggcacggtggtgcacgtctataatcccagctacttgggaggttaagacatgagaatcacttgaattaggaaggtg-gggtttcggtgagccgagatggcgccactg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16833876 120 - 229590362 tacaaaaattagctgggcatggtggtgcatgtctgtaatcccagctacttgggaggctgagacatgagaatgacttt-attagggaggtgtaggttgcggtgagcccagatggtgcccctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223594131 120 - 227556264 tacaaaaattagctgggcatggtggtgcatgtctgtaatcccagctacttgggaggctgagacatgagaatgacttt-attagggaggtgtaggttgcggtgagcccagatggtgcccctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16645129 120 - 220367699 tacaaaaattagctgggcatggtggtgcatgtctgtaatcccagctacttgggaggctgagacatgagaatgaCTTT-ATTAGGGAGGTgtaggttgcggtgagcccagatggtgccccTG i papAnu2.chr1 C 0 M 543 s chlSab2.chr25 82445343 120 + 85787240 tacaaaaattagctgggcatggtggtgcacgtctgtaatcccagctacttgggaggctgagacatgagaatgacttt-attagggaggtgtaggttgcggtgagcccagatggtgcccctg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14126814 120 - 49578535 tacaaaaatcagccgggtgtggtggtgcatgtctgtaatcccagctacttgagagactgaggcgtgagaatcgcttgaactaaggaggtggaggttgcagtgagctgagatga-gtcactg i calJac3.chr19 I 278 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296515 64 + 80974532 I a score=85253.000000 s hg38.chr1_KI270759v1_alt 117365 39 + 425601 cactccagcctgggtgacagag-ttggactcagtctcaaa s panTro4.chr1 224867459 40 + 228333871 cactccagcctgggtgacagagtttgtactcagtctcaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226224249 39 - 229942017 cactccagtctgggcgacagag-ttggactcagtctcaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140117783 39 - 143122389 cactccagcctgggcgacagag-ttggactcagtctcaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16833996 39 - 229590362 cactccaccctgggcgacagag-tgggactcagtctcaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223594251 39 - 227556264 cactccaccctgggcgacagag-tgggactcagtctcaaa i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82445463 39 + 85787240 tactccagcctgggcgacagag-tgggactcagtctcaaa i chlSab2.chr25 C 0 I 3 s calJac3.chr19 14126934 39 - 49578535 tactccagcctgggtgacaagg-ccagactcagtctcaga i calJac3.chr19 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296515 64 + 80974532 I e papAnu2.chr1 16645249 543 - 220367699 M a score=-5315.000000 s hg38.chr1_KI270759v1_alt 117404 16 + 425601 --------------------------------------------------------------------------------------------------aaaaaaaaaaaaaaag s panTro4.chr1 224867499 13 + 228333871 --------------------------------------------------------------------------------------------------aaaaaaaaaaaaa--- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226224288 8 - 229942017 --------------------------------------------------------------------------------------------------aaaaagaa-------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140117822 11 - 143122389 --------------------------------------------------------------------------------------------------aaaaaaaaaaa----- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16834035 16 - 229590362 --------------------------------------------------------------------------------------------------aaaaaaaaaaaaaaag i rheMac3.chr1 C 0 I 128 s macFas5.chr1 223594290 16 - 227556264 --------------------------------------------------------------------------------------------------aaaaaaaagaaagaag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16645792 16 - 220367699 --------------------------------------------------------------------------------------------------aaggaaggaagggaag i papAnu2.chr1 M 543 C 0 s chlSab2.chr25 82445505 16 + 85787240 --------------------------------------------------------------------------------------------------aaagaaagaaagaaag i chlSab2.chr25 I 3 I 34 s calJac3.chr19 14126973 114 - 49578535 gaaacaagagggaaagaaggaaagaaGGgaaggaaggaaggagagaaagagaaggaggaagaagggaagaaagaaagaacaaaagggaggaaggaagaaaggaaagaaaaaaag i calJac3.chr19 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296515 64 + 80974532 I a score=30098.000000 s hg38.chr1_KI270759v1_alt 117420 23 + 425601 -----gaaagaaagaaAGAAAGAAGCAA s panTro4.chr1 224867512 23 + 228333871 -----gaaagaaagaaaGAAAGAAGCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226224296 23 - 229942017 -----aaaagaaagaaagaaaGCAGCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140117833 22 - 143122389 -----aaaagaaagaaag-aaGCAGCAG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223594306 23 - 227556264 -----gaaggaaggaaggaaggaaggaa i macFas5.chr1 C 0 I 507 s papAnu2.chr1 16645808 23 - 220367699 -----gagggagggagggagggaggggc i papAnu2.chr1 C 0 I 10 s chlSab2.chr25 82445555 23 + 85787240 -----gaaggaaggaaggaaggaaggaa i chlSab2.chr25 I 34 I 19 s calJac3.chr19 14127087 28 - 49578535 gaaaaaaagaaaagaaaaaaagaGGCAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296515 64 + 80974532 I e rheMac3.chr1 16834051 128 - 229590362 I a score=227872.000000 s hg38.chr1_KI270759v1_alt 117443 80 + 425601 CAGCTATGCTGGGGGCCATTTCGTTTTATATGGGAGGGATGGCATTTGCTAAATTTGTGGCCAATGTGGctgacgtatat s panTro4.chr1 224867535 80 + 228333871 CAGATATGCTGGGGGCCATTTCGTTTTATATGGGAGGGATGGCATTTGCTAAATTTGTGGCCAATGTGgctgacgtatat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226224319 80 - 229942017 CAGCTGTGCTGGGGGCCATTTCGTTCCATATGGGAGGGAGGGCATTTGCTAAATCTGTGGCCGATGTGGctgacgtgtgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140117855 80 - 143122389 CAGCTGTGCTGGGGGCCATTTCATTTTATATGGGAGGGATGGCATTTGCTAAATTTGTGGCCAATGTGgctgacgtatat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16834179 80 - 229590362 CAGCTGTGCTGAGGGCCATTTCATTTTATATGGGAGGGATGGCATTTGCCGAATTTGTGGCCAATGTGGCTGGTGTAtat i rheMac3.chr1 I 128 C 0 s macFas5.chr1 223594836 80 - 227556264 CAGCTGTGCTGAGGGCCATTTCATTTTATATGGGAGGGATGGCATTTGCCGAATTTGTGGCCAATGTGGCTGGTGTAtat i macFas5.chr1 I 507 C 0 s papAnu2.chr1 16645841 80 - 220367699 CAGCTGTGCTGAGGGCCATTTCATTTTATATGGGAGGGATGGCATTTGCCAAATTTGTGGCCAATGTGGCTGGTGTATAT i papAnu2.chr1 I 10 C 0 s chlSab2.chr25 82445597 80 + 85787240 CAGCTGTGCTGAGGGCCATTTCATTTTATATGGGAGGGATGGCATTTGCCAAATTTGTGGCCAATGTGGCTGGTGTAtat i chlSab2.chr25 I 19 C 0 s calJac3.chr19 14127115 79 - 49578535 CGGCTGTGCTG-GGCCCATTTCATTTTCCGTGGGAGGGACGGCATTTGCCGGATTTTTGGCCCACGTGGccgacatttac i calJac3.chr19 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296515 64 + 80974532 I a score=1048229.000000 s hg38.chr1_KI270759v1_alt 117523 354 + 425601 tgagcactgagtgggcatcactcactattaactacctcttcatatgcaaacccccttcatcttcacagtaaccctgtgaggcagagcctaccattttctctgttttatggata-aagaagatggttcc-----ctgagttactgacccagagccacatagccggg-agtggcggagtgggaaatccatcctcg-tttcctctcacttgagaccccaggttcctattctctgtgctaaacAGACACAGGAAGACACTTTATTATAGGG---TTTTTTTTTTTTCACCGTAATCATGAACTGATG---ATTGCTTATAAAACAG-GTGTGAAACTACTAGGCCCTGTAATTTGTTTGAGAAGGTGAGTAGA s panTro4.chr1 224867615 352 + 228333871 tgagcactgagtgggcatcactcactattaactacctcttcatatgcagccccccttcatcttcacagtaaccctgtgaggcagagcctaccgttttctctgttttat-gata-aagaagacggttcc-----ctgagttactgacccagagccacatagccggg-agtggcggagTGGGAAATCCATCCTCG-TTTCCTCTCACGTGAGACCCCAGGTTCCTATTCTCTGTGCTAAACAGACACAGGAAGACACTTTATTATAGGG----GTTTTTTTTTTCACCGTAATCATGAACTGATG---ATTGCTTATAAAACAG-GTTTGAAACTACTAGGCCCTGTAATTTGTTTGAGAAGATGAGTAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226224399 344 - 229942017 tgagcactgagtgggcatcactcactattaactacctcttcacatgcaa-cccccttca-cttcacagtaaccctgtgaggcagagcccaccattgtctctgttttatgggta-aagaagatggttcc-----ctgag-tactgacccagagccacatagccggg-agtggcggagtgggagatccatcctca-tttcctctcacttgagacgccatgttcctattctctgtgctaaacAGACACAGGAAGACACTTTATTATAGGG------TTTTTTTTCCACCGTAATCATGAACTGATG---ATTGCTTATAAAACGG-GTTTGAAACTACGAGGCCCTGTAA----TTTGAGAAGATGAGTAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140117935 336 - 143122389 tgagcactgagtgggcatcactcactatgaactacctcttcatatgcaaccccgcttcatcttcacagtaacccc------------------ccttctctgttttatggata-aagaagatggttcc-----ctgagttactgacccagagccatatagccggg-agtggtggggtgggaaatccatcctca-tttcctctcacttgagaccccatgttcctattctctgtgctaAACAGACACAGGAAGTCACTTTATTATAGGG---GTTTTTTTTTTTCACCGTAATCATGAACTGATG---ATTGCTTATAAAACAG-GTTTGAAACTACTAGGCCCTGTAATTTGTTTGAGAAGATGAGTAGa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16834259 351 - 229590362 cgagcactgagtgggcatcactcactattaactacctcttcatattcagcctcccttcatc-tcacagtaaccctgtgaggcagagcctatcattttctctgttttatggaca-aagaagatggttcc-----tcgagttactgacccagagccacatagccggg-agtggcggagtgggaaatccatcctca-tttcctctcacttgagagcccatgttcctATTATCTGTGCTAAACAGACACAGTAAGACACTTTATTATAGGG-----TTTTTTTTTTCACCATAATCATGAACTGATG---ATTGCTTATAAAACAG-GTTTGAAACTAGTAGGCCCTGTAATTTGTTTGAGAAAATGAGTAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223594916 353 - 227556264 cgagcactgagtgggcatcactcactattaactacctcttcatattcagcctcccttcatc-tcacagtaaccctgtgaggcagagcctatcattttctctgttttatggacagaagaagatggttcc-----tcgagttactgacccagagccacatagccggg-agtggcggagtgggaaatccatcctca-tttcctctcacttgagagcccatgttcctATTATCTGTGCTAAACAGACACAGTAAGACACTTTATTATAGGG----TTTTTTTTTTTCACCATAATCATGAACTGATG---ATTGCTTATAAAACAG-GTTTGAAACTAGTAGGCCCTGTAATTTGTTTGAGAAAATGAGTAGa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16645921 352 - 220367699 CGAGCACTGAGTGGGCATCACTCACTATTAACTACCTCTTCATATTCAGCCTCCCTTCATC-TCACAGTAACCCTGTGAGGCAGAGCCtatcattttctctgttttatggaCA-AAGAAGATGGTTCC-----TCGAGTTACTGACCCAGAGCCACATAGCCGGG-AGTGGCGGAGTGGGAAATCCATCCTCA-TTTCCTCTCACTTGAGAGCCCATGTTCCTATTCTCTGTGCTAAACAGACACAGTAAGACACTTTAttataggg----gttttttttttcaccataatcATGAACTGATG---CTTGCTTATAAAACAG-GTTTCAAACTAGTAGGCCCTGTAATTTGTTTGAGAAAATGAgtaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82445677 353 + 85787240 cgagcactgagtgggcatcactcactattaactacctcttcatatgcagcctcccttcatc-tcacagtaaccctgtgaggcagagcctatcattttctctgttttatggaca-aagaagatggttcc-----ccgagttactgacccagagccacatagccggg-agtggcggagtgggaaatccatcctcattttcctctcacttgagaccccatgttcctattctctgtgctaaacagacccAGTAAGACACTTTATTATAGGG----GTTTTTTTTTTCACCATAATCATGAACTGATG---TTTGCTTATAAAACAG-GTTTGAAACTAGTAGGCCCTGTAATTTGTTTGAGAAAATGAGTAGa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14127194 351 - 49578535 tgagcgctcagtaagcaccactcactgttaac-agctcttcatatgcagaat--cttcattttcagagaaacgacgtgaggcagagcccagcacattctctgtcttgtggata-aagaagatggttcc-----ctgagtttctgacccaaagccacatagccagg-agtg--ggagtgggaaatccaccctca-tctcctctcccttgagagcccacgttcctgttctctgtactaaacAGACACAGTGAGACACTTTATTATAGGGTGTGTTGTTTTTGTTTACTGTAATCATG-ACTGATG---ATTGCCTGTAAAACAT-CTTTGAAACTCCTGGGCCCTGTGATCTGTTTGAGAAGCTGAGTCGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36296579 319 + 80974532 tgagctcctaatgggcagcat-----------------------------ctcccttcatcttcagacaagcctggtgaggtggatcctgtc-ttctccctgttggatggata-aagaagca---tcctggggctaggttactgacccaaggctgcacagccaggaagtggcagagtggggaGCCCATTCTCA-GTCCCCACCACATGTGAGCACTTGT--CGGTGCTCAGTGCAAAACGGGCATGATGAGACGCATTAT-----GG--------TTTTCTTCACCATCATCGTGAGCTGATGATCATTGCTTATGCATCAACATTTGGAATAAGTGGGCGCTGCCACTTGTTTGAGGAGATCAGTAGA i canFam3.chr7 I 64 I 19 e mm10.chr1 178718108 412 + 195471971 I a score=123383.000000 s hg38.chr1_KI270759v1_alt 117877 42 + 425601 ATGACAATAACAAAAACAACAGAAAAACCCCCAATTTGTTGA s panTro4.chr1 224867967 42 + 228333871 ACAACAATAACAAAAACAACAGAAAAACCCCCAATTTGTTGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226224743 42 - 229942017 ACAACAATAACAAAAACCACAGAAAAACCCCCAATTTGTTGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140118271 42 - 143122389 acaacaataacaaaaacaacaGAAAACCCCCCAATTTGTTGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16834610 42 - 229590362 ACAACAATAACAAAAACAACAGAAAAACCCCTAATTTGTTGA i rheMac3.chr1 C 0 I 2381 s macFas5.chr1 223595269 42 - 227556264 acaacaataacaaaaacaacaGAAAAACCCCTAATTTGTTGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16646273 42 - 220367699 acaacaataacaaaaacaacagaaaaaccccTAATTTGTTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82446030 42 + 85787240 acaacaataacaaaaacaacaGAAAAACCCCTAATTTGTTGA i chlSab2.chr25 C 0 I 2495 s calJac3.chr19 14127545 42 - 49578535 ACGACGGTAACACAAACAACAGAAAAACGCCCTCTTTGTCGA i calJac3.chr19 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296898 19 + 80974532 I a score=5185.000000 s hg38.chr1_KI270759v1_alt 117919 4 + 425601 AGAT s panTro4.chr1 224868009 4 + 228333871 AGAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226224785 4 - 229942017 AGAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140118313 4 - 143122389 AGAT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223595311 4 - 227556264 GGGT i macFas5.chr1 C 0 I 2471 s papAnu2.chr1 16646315 4 - 220367699 GGGT i papAnu2.chr1 C 0 I 2491 s calJac3.chr19 14127587 4 - 49578535 GGAT i calJac3.chr19 C 0 I 2434 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296898 19 + 80974532 I e rheMac3.chr1 16834652 2381 - 229590362 I e chlSab2.chr25 82446072 2495 + 85787240 I a score=18327.000000 s hg38.chr1_KI270759v1_alt 117923 33 + 425601 TTGAAGCAGGAAGAGATAAGAGGTGACACATTT s panTro4.chr1 224868013 33 + 228333871 TTGAAGCAGGAAGAGATAAGAGGTGACACATTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226224789 33 - 229942017 TTGAAGCAGGAAGAGATAAGAAGTGACACATTT i ponAbe2.chr1 C 0 I 307 s nomLeu3.chr5 140118317 33 - 143122389 TTGAAGCAGGAAGAGATAAGAGGTGACACATTT i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296898 19 + 80974532 I e calJac3.chr19 14127591 2434 - 49578535 I e rheMac3.chr1 16834652 2381 - 229590362 I e chlSab2.chr25 82446072 2495 + 85787240 I e papAnu2.chr1 16646319 2491 - 220367699 I e macFas5.chr1 223595315 2471 - 227556264 I a score=2838.000000 s hg38.chr1_KI270759v1_alt 117956 5 + 425601 GTTGT s panTro4.chr1 224868046 5 + 228333871 GTTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226225129 5 - 229942017 GTTGT i ponAbe2.chr1 I 307 C 0 s nomLeu3.chr5 140118350 5 - 143122389 GTTGT i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296898 19 + 80974532 I e calJac3.chr19 14127591 2434 - 49578535 I e rheMac3.chr1 16834652 2381 - 229590362 I e chlSab2.chr25 82446072 2495 + 85787240 I e papAnu2.chr1 16646319 2491 - 220367699 I e macFas5.chr1 223595315 2471 - 227556264 I a score=5348.000000 s hg38.chr1_KI270759v1_alt 117961 2 + 425601 TG s panTro4.chr1 224868051 2 + 228333871 TG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226225134 2 - 229942017 TG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140118355 2 - 143122389 TG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837033 2 - 229590362 TG i rheMac3.chr1 I 2381 C 0 s macFas5.chr1 223597786 2 - 227556264 TG i macFas5.chr1 I 2471 C 0 s papAnu2.chr1 16648810 2 - 220367699 TG i papAnu2.chr1 I 2491 C 0 s chlSab2.chr25 82448567 2 + 85787240 TG i chlSab2.chr25 I 2495 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296898 19 + 80974532 I e calJac3.chr19 14127591 2434 - 49578535 I a score=186796.000000 s hg38.chr1_KI270759v1_alt 117963 64 + 425601 CTCTTGAGGATTCCTACCTTTACACGGTGTTTTCCTGTTGACGAAAAATATGTCTATCCTGGGT s panTro4.chr1 224868053 64 + 228333871 CTCTTGAAGATTCCTACCTTTACACGGTGTTTTCCTGTTGACGAAAAATATGTCTATCCTGGGT i panTro4.chr1 C 0 I 587 s ponAbe2.chr1 226225136 64 - 229942017 CTCTTGAAGATTCCTACCTTTGCACAGTGTTTTCCTGTTGATGAAAAATATGTCTATCCTGGGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140118357 64 - 143122389 CTCTTGAAGATTCCTACCTTTACAGAGTGTTTTCCTGTTGACGAAAAATATGTCTATCCTGGGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837035 62 - 229590362 CTCTTGAAGATTCCTACCTCTACACAGTGTTTTCCTGTTGACGAAAA--ATGTCTATCCTGGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223597788 62 - 227556264 CTCTTGAAGATTCCTACCTCTACACAGTGTTTTCCTGTTGACGAAAA--ATGTCTATCCTGGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16648812 64 - 220367699 CTCTTGAAGATTCCTACCTTTACACCGTGTTTTCCTGTTGACGAAAAATATGTCTATCCTGGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82448569 62 + 85787240 CTCTTGAAGATTCCTACCTCTACACAGTGTTTTCCTGTTGACGAAAA--ATGTCTATCCTGGGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14130025 64 - 49578535 CTCTTGAAGATTCCTACGTTTACACAGTGTTTTCCTATTGAGGGAAAGTATGTTTCTCCTGGGT i calJac3.chr19 I 2434 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296898 19 + 80974532 I a score=170937.000000 s hg38.chr1_KI270759v1_alt 118027 57 + 425601 CTGGAATTTTCTGGATAAATGTTGGTGTTCATCTCCATATAGCGTCGCTCTCATTCA s panTro4.chr1 224868704 57 + 228333871 CTGGAATTTTCTGGATAAATGTTGGTGTTCATCTCCATATAGCGTCGCTCTCATTCG i panTro4.chr1 I 587 C 0 s ponAbe2.chr1 226225200 57 - 229942017 CTGGAATTTTCTGGATAAATGTTGGTGTTCATCTCCATATAGCATCGCTCTCATTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140118421 57 - 143122389 CTGGAATTTTCTGGATAAATGTTGGTGTTCATCTCCATGTAGCGTCGCTCTCATTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837097 57 - 229590362 CTGGAATTTTCTGGATGAATGTTGGTGTTCATCTCCCTATAGCGTCGCTGTCATTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223597850 57 - 227556264 CTGGAATTTTCTGGATGAATGTTGGTGTTCATCTCCCTATAGCGTCGCTGTCATTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16648876 57 - 220367699 CTGGAATTTTCTGGATGAATGTTGGTGTTCATCTCCCTATAGcgttgctgtcattca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82448631 57 + 85787240 CTGGAATTTTCTGGATGAATGTTGGTGTTCATCTCCCTATAGCGTCGCTGTCATTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14130089 57 - 49578535 TTGGAATGTTCTGGATAAATGTTGGTGTTCTTCTTCATATGGTGTTGCTCTCATTCA i calJac3.chr19 C 0 T 2554 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296898 19 + 80974532 I a score=3276.000000 s hg38.chr1_KI270759v1_alt 118084 1 + 425601 T s panTro4.chr1 224868761 1 + 228333871 T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226225257 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140118478 1 - 143122389 T i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837154 1 - 229590362 T i rheMac3.chr1 C 0 T 1994 s macFas5.chr1 223597907 1 - 227556264 T i macFas5.chr1 C 0 T 2592 s papAnu2.chr1 16648933 1 - 220367699 t i papAnu2.chr1 C 0 T 2614 s chlSab2.chr25 82448688 1 + 85787240 T i chlSab2.chr25 C 0 T 2612 s canFam3.chr7 36296917 1 + 80974532 T i canFam3.chr7 I 19 C 0 e mm10.chr1 178718108 412 + 195471971 I e calJac3.chr19 14130146 2554 - 49578535 T a score=73769.000000 s hg38.chr1_KI270759v1_alt 118085 25 + 425601 GCAGATGTCCACTTTTCTCTGTGAT s panTro4.chr1 224868762 25 + 228333871 GCAGATGTCCACTTTTCTTTGTGAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226225258 25 - 229942017 GTAGATGTCCACTTTTCTCTGTGAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140118479 25 - 143122389 GCAGATGTCTACTTTTCTCTGTGAT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223595316 25 - 227556264 GCAGATGTCCACTTTTCTCTGTGAT i macFas5.chr1 T 2592 C 0 s papAnu2.chr1 16646320 25 - 220367699 GCAGATGTCCACttttctctgtgat i papAnu2.chr1 T 2614 C 0 s chlSab2.chr25 82446077 25 + 85787240 GCAGATGTCCACTTTTCTCTGTGAT i chlSab2.chr25 T 2612 C 0 s calJac3.chr19 14127592 25 - 49578535 GCACATGTGTACTTTTCTTTGTGAT i calJac3.chr19 T 2554 C 0 s canFam3.chr7 36296918 25 + 80974532 GTAGACATCCACTTTTCTTTGTGAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I e rheMac3.chr1 16837155 1994 - 229590362 T a score=1377872.000000 s hg38.chr1_KI270759v1_alt 118110 600 + 425601 ATTAACCTTTATTTAAAATGTAtttatttttattttaaaatc--------ttttttttgagacagaatctcactctattacccaggctggagtgtagtgacgtaatcacagctcactgcagcctcagcctcccgggctcaagcgatcctcccacttcagcctcctgagtagctgggaccacaggaatgcaccactgtgcccagctaatttatttttattttttgaagagatgag-tctccctatgtttgttgcgcacgctggtcttgaacacctaggctcaagcaatccttccaccttggcctcccatagtgctgggattatagtcatgagccactgcacctggccTAAAATTTATTCAtttatttatttttgagatggagtcccactcactctgtttcccaggctggagtgcagtggcgcgatctccgctcgctgcaacctctgcctcccaggttcaagtgattctgcctcagcctcccgagtaagattacaggtgtgcaccaccaca-tcagctaatttttgtatttttagtagagatggggtttcatcatgttgcccaggctggtcttgaactcctgacctcaagtgatccacctgccttggccccc s panTro4.chr1 224868787 601 + 228333871 ATTAACCTTTATTTAAAATGTAtttatttttattttaaaatc--------ttttttttgagacagaatctcactctattacccaggctggagtgtagtgacgtaatcacagctcactgcagcctcagcctcccgggctcaagcgatcctcccacttcagcctcctgagtagctgggaccacaggaatgcaccactgtgcccagctaatttatttttatcttttgaagagatgaggtctccctatgtttgttgcacacgctggtcttgaacacctaggctcaagcaatccttccaccttggcctcccatagtgctgggattatagtcatgagccactgcacctggccTAAAATTTATTCAtttatttatttttgagatggagtctcactcactctgtttcccaggctggagtgcagtggcgcgatctccgctcgctgcaacctctgcctcccaggttcaagtgattctgcctcagcctcccgagtaagattacaggtgtgcaccaccacg-tcagctaatttttgtatttttagtagagatggggtttcatcatgttgcccaggctggtcttgaactcctgacctcaagtgatccacctgccttggccccc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226225283 600 - 229942017 ACTAACCtttatttaaaatgtatttatttttattttaaaatC---------TAtttttgagacagaatctcgctctgttacccaggctggagtgtagtgacataatcacagctcactgcagcctcaacctctcgggctccagcgatcctcccacttcagcctcctgagtagctgggaccacaggaatgcaccacagtgcccagctaatttatttttattttttgaagagatggggtctccctgtgtttgttgtgcacactggtcttgaacacctaggctcaagcagtcctcccaccttggcctcccatagtgctgggattatagtcatgagccactgcacctggccTAAAATTTATTCAtttatttatttttgagatggagtctcactcactctgtttcccaggctggagtgcagtggcgtgatctcagctcactgcaacctctgcctcccaggttcaagtgattctgcctcagccttccgagtaagattacaggtgtgcaccaccacg-tcagctaatttttgtatttttagtagagatggggtttcatcatgttgcccaggctggtcttgaactcctgacctcaagtggtccacctgccttggccccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140118504 600 - 143122389 ATTAACCTTTATTTAAAATGTATTTATTTTTATTTTAAAATC---------TGtttttgagacagaatctcactttgttacccaggctggagtgtagtgacataatcacagctcactgcagcctcaacctcccaggctcaagcgatcctcccacttcagcctcctgagtagctgggaccacaggaatgcaccgctgtgcccagctaatttatttttattttttgaagagatggggtctccctatgtttgttgcgcacgctggtcttgaacacctaggttcaagcaatccttccaccttggcctcccatagtgctgggattatagtcatgagccactgcacctggccTAAAATTTATTCAtttatttatttttgagatggagtctcactcactctgtttcccaggctggagtgcagtggcgcaatctcagctcactgcaacctctgcctcccaggttcaagtgattctgcctcagcctccagagtgagattacaggtgtgcaccaccacg-tcacctaatttttgtatttttagtagagatggggtttcatcatgttgcccaggctggtcttgaattcctgacctcaagtgatccacctgccttggccccc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223595341 601 - 227556264 ATTAATCTTTATTTAAAATGTAtttatttttattttaaaatc---------tttttttgagacagaatctcactctgttacccaggctggagtgtggtgacataatcacagctcactgcagcctcagcctcccaggctcaagtgatcctcccacttcagccccctgagtagctggggccacaggaatgcaccacggtgcccagctcatttatttttattttttgaagagatggggtctccctatgtttgttgcccacgctggtcttgaacacctgggctcaagcaatcctcccaccttggtctcccatagtgctgggattatagtcatgagccactgcacccggccTAAACTTTATTCAtttatttatttttgagatagagtctcactcgctctgtttcccaggctggaatgcagtggcacgatcttagctcactgcaacctctgcctcccaggttcaagagattctgcctcagcctcccgagtaagattacaggtatgcaccaccacgcccagctaatttttgtatttttagtagagatggggtttcatcatgttggccaagctggtcttgaactcctgacctcaagtgatccacctgtcttggccccc i macFas5.chr1 C 0 I 2 s papAnu2.chr1 16646345 599 - 220367699 attaatctttatttaaaatgtatttatttttattttaaaatc---------tttttttgagacagaatctcactctgttacccaggctggagtgtggtgacataatcacagctcactgcagcctcagcctcccaggctcaagtgatcctcccacttcagcctcctgagtagctggggccacaggaatGCACCACGGTGcccagctcatttatttttattttttgaagagatggggtctccctatgtttgttgcccacactggtcttgaacacctgggctcaagcaatcctcccaccttggtctcccatagtgctgggattatagtcatgagccactgcacccggcctaaac--tattcatttatttatttttgagatagagtctcactcgctctgtttcccaggctggaatgcagtggcatgatcttagctcactgcaacctctgcctcccaggttcaaaagattctgcctcagtctcccgagtaagattacaggtgtgcaccaccacgcccagctaatttttgtatttttagtagagatggggtttcatcatgttggccaagctggtcttaaactcctgacctcaagtgatccacctgtcttggccccc i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82446102 601 + 85787240 ATTAATCTTTATTTAAAATGTAtttatttttattttaaaatc---------tttttttgagacagaatctcactctgttacccaggctggagtgtggtgacataatcacagctcactgcagcctcagcctcccaggctcaagtgagcctcccacttcagcctcctgagtagctggggccacaggaatgcaccacggtgcccagctcatttatttttattttttgaagagatggggtctccctatgtttgttgcccatgctggtcttgaacacttgggctcaagcagtcctcccaccttggtctcccatagtgctggggttatagtcatgagccactgcgcccggccTAAACTTTATTCAtttatttatttttgagatggagtctcactcactctgtttcccaggctggaatgcagtggcacaatcttagctcactgcaacctctgcctcccaggttcaagcaattctgcctcagcctcccgagtaagattacaggtgtgcaccactatgcccagctaatttttgtatttttagtagagatggggtttcatcatgttggccaagctggtcttgaactcctgacctcaggtgatccacctgccttggcctcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14127617 569 - 49578535 ATTAACCtttatttaaaatgtatttatttttattttaaaaaCATTTTTTTAATTTTTTGAGACAGGATCTCACT-------------------------------------ctcactgcaggctcagcctcccaggctctagtgatcctcccactttagcctcctgagtagctgggaccacagaaatctaccactgtgcccagctactttatatttattttttgtagagatgcggtctccctgtgtttgttgcccaagctggtcttgaactc--gggtccaagcagtcctcccaccttggcctcccatagtgccgggatcacagtcatgagccgctgcacccagccTAAACTGTAtttatttatttgtttttgagatggagtctcactca--ctgttttccaggccggagtgcagtggcgcgatctcagctcactgcagcctctgccttgcagtttcaagcgactctgtctcagcctctcgtgtaggattacaggcatgcaccatcacacccagctaacttttatatttttagtagagatggggtttcatcatattggccaggctgatctcaaactcctgacctcaagtgatccacctgcctcggcctct i calJac3.chr19 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296943 0 + 80974532 C e rheMac3.chr1 16837155 1994 - 229590362 T a score=266762.000000 s hg38.chr1_KI270759v1_alt 118710 89 + 425601 caaagtgctgagTA---ttgttttgattgactaataaacattgtatatatttacggagt-aaaatatgttttgaaatatgtacatattgtgga s panTro4.chr1 224869388 89 + 228333871 caaagtgctgagTA---ttgttttgattgactaataaacattgtatatatttacggagt-aaaatatgttttgaaatatgtacatattgtgga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226225883 89 - 229942017 caaagtgctgagTA---ttgttttgattgactaataaacattgtatatatttacggagt-aaaatatgttttgaaatatgtacatattgtgga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140119104 89 - 143122389 caaagtgctgagTA---ttgttttgattgactaataaacattgtatatatttacggagt-aaaacatgttttgaaatatgtatgtattgtgga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16835161 90 - 229590362 CAAAGTGCTGAGTA---ttgttttgattgactaataaacattgtatatatttatggagtaaaaatatgttttgaaatacgtacatattgtgga i rheMac3.chr1 T 1994 C 0 s macFas5.chr1 223595944 90 - 227556264 caaagtgctgagTA---ttgttttgattgactaataaacattgtatatatttatggagtaaaaatatgttttgaaatacgtacatattgtgga i macFas5.chr1 I 2 C 0 s papAnu2.chr1 16646945 90 - 220367699 caaagtgctgagta---tTGTTTTGATTGACTaataaacattgtatatatttatggagtaaaaatatgttttgaaatacgTACATATTGTGGA i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82446703 90 + 85787240 caaagtgctgagTA---ttgttttgattgactaataaacattgtatatatttatggagtaaaaatatgttttgaaatacgtacatattgtgga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14128186 92 - 49578535 cagagcgctgagTAtttttttttttattgactaataaatattgtgtatatttatggatt-aaaatacattttgaaatatatacatattgtgga i calJac3.chr19 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I e canFam3.chr7 36296943 0 + 80974532 C a score=1198915.000000 s hg38.chr1_KI270759v1_alt 118799 376 + 425601 atTAGCCTGTGTTTTTAAATGCTTACTTTCTAGAACTGTGGGTGGAGGTCTGGGTGAACCTTGTTACATTTCAAATTCAATGCCTAT--AAAATAAGAATTTCAATTTTGAATAAGCAGTG----TG-TGGTCTgtgctggtccacacacggttact----------------ggtctgtgataagtatagaaatggagaggaagcgtttagaaacatct----gctgatgg--aataattttctgtctgttgaatctaagaata-aaaaatcggggcttgcattttgtgtatAACTAGAAGTaaaagaaaaa-ttggtccttcacc-cggatagtttgagatgcactgCTATAGAGAACGATGGAGCATGAAGCACCTGTTCTGTGCTTTT-CTTCCTCTCAC-GATTG--- s panTro4.chr1 224869477 377 + 228333871 atTAGCCTGTGTTGTTAAATGCTTACTTTCTAGAACTGTGGGTGGAGGTCTGGGTGAACCTTGTTACATTTCAAATTCAATGCCTAT--ACAATAAGAATTTCAATTTTGAGTAAGCAGTg----tg-tggtctgtgctggtccacacacagttact----------------ggtctgtgataagtatagaaatggagaggaagcgtttagaaacatct----gctgatgg--aataattttctgtctgttgaatctaagaata-aaaaatcggggcttgcattttgtgtgtaactagaagtaaaagaaaaagttggtccttcacc-cggatagtttgagatgcactgCTATAGAGAACGATGGAGCATGAAGCACCTGTTCCGTGCTTTT-CTTCCGCTCAC-GATTG--- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226225972 377 - 229942017 atTAGCCTGTATTTTTAAATGCTTACTTTCTAGAACTGTGGGTGGAGGTCTGGGTGAACCTTGTTACATTTCAAATTCAATGCCTAT--AAAATAAGAATTTCAGTTTTGAATAAGCAGTG----TG-TGGTCTgtgctggtcaacacacagttact----------------ggtctgtgataagtatagaaattgagaggaagcgtttagaaacatct----gctgatgg--aataattttctgtctgttgaatctaagaata-aaaaatcggggcttgcattttgtgtgtaactagaagtaaaagaaaaagttggtccttcacc-cagatagtttgagatgcactgCTATAGAGAATGATGGAGCATGAAGCACCTGTTCTGTGCTTTT-CTTCCTCTCAC-GATTG--- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140119193 377 - 143122389 atTAGCCTTTATTTTTAAATGCTTACTTTCTAGAACTGTGGGTGGAGGTCTGGGTGAACCTTGTTACATTTCAAATTCAACGCCTAT--AAAATAAGAATTTCAGTTTTGAATAAGCAGTg----tg-tggtctgtgctggtccacacacggttact----------------ggtctgtgataagtatagaaattgagaggaagcgtttagaaacatct----gctgatgg--aataattttctgtctgttgaatctaagaata-aaaaatcggggcttgcattttgtgtgtaactagaagtaaaagaaaaagttggtccttcacc-cagatagtttgagatgcactgCTATAGAGAACGATGGAGCATGAAGCACCTGTTCTGTGCTTTA-CTTCCTCTCAT-GATTG--- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16835251 376 - 229590362 atTAGCCTTTTTTTTAAAATGCTTACTTTCTAGAATTGTGGGTGGAGGTGTGGGTGGACCTTGTTACATTTCAAATTCAATGCCTAT--AAAATAAGAATGTCAATTTTGAATAAACAGTG----TG-TGGTCTgtgctggtccacacacagttact----------------ggtctgtgataagtatagaaattgagaggaagcgtttagaaacatct----gctgatgg--aataattttctgtctgttgaatctaagaata-aaaagtcagggcttgcattttgtgtgtaactagaagtaaaagaaaaa-gtggtccttcacc-cagatagtttgagatgcactgCTACAGCGGACGACGGAGCGTGAAGCACCTGTTTTGTGCTTCT-CTTCCTCTCAC-GGTTG--- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223596034 376 - 227556264 atTAGCCTTTTTTTAAAAATGCTTACTTTCTAGAACTGTGGGTGGAGGTGTGGGTGGACCTTGTTACATTTCAAATTCAATGCCTAT--AAAATAAGAATGTCAATTTTGAATAAACAGcg----tg-tggtctgtgctggtccacacacagttact----------------ggtctgtgataagtatagaaattgagaggaagcgtttagaaacatct----gctgatgg--aataattttctgtctgttgactctaagaata-aaaagtcagggcttgcattttgtgtgtaactagaagtaaaagaaaaa-gtggtccttcacc-cagatagtttgagatgcactgCTACAGCGGACGACGGAGCGTGAAGCACCTGTTTTGTGCTTCT-CTTCCTCTCAC-GGTTG--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16647035 376 - 220367699 attagccttttttaaaaaatgcttacttTCTAGAACTGTGGGTGGAGGTGTGGGTGGACCTTGTTACATTTCAAATTCAATgcctat--aaaataagaatttcaatTTTGAGTAAACAGTG----TG-TGGTCTGTGCTGGTCCACACACAGTTACT----------------GGTCTGTGATAAGTATAGAAATTGAGAGGAAGCGTTTAGAAACATCT----GCTGATGG--CATAATTTTCTGTCTGTTGAATCTAAGAATA-AAAAGTCAGGGCTTGCATTTTGCATGTAactagaagtaaaagaaaaa-gtggTCCTTCACC-CAGATAGTTTGAGATGCACTGCTCTAGCGAACGACGGGGCATGAAGCACCTGTTTTGTGCCTCT-CTTCCTCTCAC-GGTTG--- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82446793 376 + 85787240 atTAGCCTTTATTTTTAAATGCTTACTTTCTAGAACTGTGGGTGGAGGTGTGGGTGGACCTTGTTACATTTCAAATTCAATGCCTAT--AAAATAAGAATTTCAATTTTGAATAGGCAGTg----tg-tggtctgtgctggtccacacacagttact----------------ggtctgtgataagtatagaaattgagaggaagcatttagaaacatct----gctgatgg--gataattttctgtctgttgaatctaagaata-aaaagtcagggcttgcattttgtgtgtAACTAGAAGTaaaagaaaaa-gtagtccttcacc-cagatagtttgagatgcaccgCTATAGCGAACGACGGAGCATGAAGCACCTGTTTTGTGCTTCT-CTTCCTCTCAC-GGTTG--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14128278 373 - 49578535 atTAGCCTTTTTTAAAAAATGCTTACTTTTCAGAACTGTGGGTGAGGGTCTGG----ACCTTGTCACCTCTCAAATTCAATGTCTAT--AAAATAAGAATTTCAATTTTGAGTCAGCAGAG----TA-TGGTCTGTGCTGATCCACACATGGTGACT----------------AGT-TGTgataagtatagaaattgagaggaagcatttagaaagatct----gctgatgg--aataattttctgtctgttgaatccaagaata-aaaaatcgggccttgcattttgtgtgtAACTAGAAGTAGAAGAAAAA-GTGGCCCTTCGCG-CCTGTGGTTGGAGCTGCATGGCTGACGAGAGGGGTGGAGCCCGAGGCACCTGCTCTGTGCTTCAGCCCTCTCCCACAGACTG--- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36296943 408 + 80974532 ATCAGCCTGTCTTTGTAAACGTTTGCACTCCAGAGCCATGGGGAAGGGTG-GAATGGACTTGACTGTGTTTCGGAGACAACATCTATAAAAAATAAGAATTCTGGTTTTGAATAAGCAGTGGTATTGTTGGCCGGAgctactccaggtgtggtctttggggctgtggggcccgggtctgggacaagtgtggaggttgagaggaagcattta-aaacttctggaagctagtggacagtaattttatgtctgttgaatctaggaatacacaaagtggaccttgtattttgGCTGAAactagaaattaaagaaaaa-gtgattcttcaccacagatagtctgagaagtgctgATCTAGAAAATGATGAAGCCCCAAGCACTTGTCCTTCGATGCC-TGCCTGGCCAG-AATCTATT i canFam3.chr7 C 0 C 0 e mm10.chr1 178718108 412 + 195471971 I a score=259037.000000 s hg38.chr1_KI270759v1_alt 119175 81 + 425601 TCTTTAAATGGTCAGCATCTTAGTAG-CTGTCTTTGCTTCAGAATTTCAGTACCTTCCC--T----TTTTTTTTCGAGAAAAGACACT s panTro4.chr1 224869854 81 + 228333871 TCTTTAAACGGTCAGCATCTTAGTAG-CTGTCTTTGCTTCAGAATTTCAGTACCCTCCC--T----TTTTTTTTCAAGAAAAGACACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226226349 83 - 229942017 TCTTTAAACAGTCAGCATCTTAGTAG-CTGTCTTTGCTTCAGAATTTCAGTACCCCCCCTTT----TTTTTTTTTGAGAAAAAACACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140119570 81 - 143122389 TCTTTAAACAGTCAGCATCTTAGTAG-CTGTCTTTGCTTCAGAATTTCAGTACCTCCTT--T----TTTTATTTTGAGAAAAAACACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16835627 79 - 229590362 TCTTTCAACAGTCAGCATCTTAGTAG-CTGTCTTTGCTTCAGAATTTCAGTA--CCCCC--C----CTTTTTTTTGAGAAAAAACACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223596410 78 - 227556264 TCTTTCAACAGTCAGCATCTTAGTAG-CTGTCTTTGCTTCAGAATTTCAGTA---CCCC--C----CTTTTTTTTGAGAAAAAACACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16647411 81 - 220367699 TCTTTAAACAGTCAGCATCTTAGTAG-CTGTCTTTGCTTCAGAATTTCAgtaccccccc--c----tttttttttgagaaaaaacacT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82447169 85 + 85787240 TCTTTAAACAGTCAGCATCTTAGTAG-CTGTCTTTGCTTCAGAATTTCAGTACCCCCCC--CTTTTTTTTTTTTTGAGAAAAAACACT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14128651 83 - 49578535 TCTTCCAGCAGTCAGCATCTTAGTAG-CTGTGTTTGCTTCAGAATTTCAGCACCCCTATTTT----TTTTTTTTTGATAAAAAACACT i calJac3.chr19 C 0 C 0 s mm10.chr1 178718520 76 + 195471971 TCTTTAGATAGTAAACCTCTTAGTGG-TTACCTATATTTCAGAATTCTAGT-----CTA--C----CGTTCTTTCAGGGAAAGAAACT i mm10.chr1 I 412 I 114 s canFam3.chr7 36297351 65 + 80974532 TCTTTAAATAG-CAGCATCTTGGTAGACTGCCTTTGCTTTTAA-----------TTCCC--T----GGTTTT-----GGAAAAGCACT i canFam3.chr7 C 0 C 0 a score=43477.000000 s hg38.chr1_KI270759v1_alt 119256 13 + 425601 ----------GTTTCTGGAAAAA s panTro4.chr1 224869935 13 + 228333871 ----------GTTTCTGGAAAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226226432 13 - 229942017 ----------GTTTCTGGAAAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140119651 13 - 143122389 ----------GTTTTTGGAAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16835706 13 - 229590362 ----------GTTTCTGGAAAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223596488 13 - 227556264 ----------GTTTCTGGAAAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16647492 13 - 220367699 ----------GTTTCTGGAAAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82447254 13 + 85787240 ----------GTTTCTGGAAAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14128734 13 - 49578535 ----------GTTTCTGGAAAAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36297416 23 + 80974532 TTTGGGGGGGGGGTGTGGAAATA i canFam3.chr7 C 0 C 0 e mm10.chr1 178718596 114 + 195471971 I a score=492721.000000 s hg38.chr1_KI270759v1_alt 119269 162 + 425601 -----------------------ATAGTAACAGTCACCCAGAAAAGAGATCGAGACAACTGATCGTCAAGTTGGTTAACTATTATGTGC---TGGCTTTGAACATCAAGAACATTTCAAA-CGAGGGCC--TTTTTTTTTTTTTT---GCATGATTTTCACATTAATAGAAAATGGTGAA--G-------TAGGGTATCATTA s panTro4.chr1 224869948 164 + 228333871 -----------------------ATAGTAACAGTCACCCAGAAAAGAGATCGAGACAATTGATCGTCACGTTGGTTAACTATTATGTGC---TGGCTTTGAACATCAAGAACATTTCAAAACGAGGGCC--TTTTTTTTTTTTTT--TGCATGATTTTCACATTAATAGAAAATGGTGAA--G-------TAGGGTATCATTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226226445 165 - 229942017 -----------------------ATAGTAACAGTCACCCAGAAAAGAGATCGAGACAATTGGTCATCAGGTTGGTTAACTGTTCTGTGC---TGGCTTTGAACATCAAGAACATCTCAAA-TGAGGGGC--TTTTTTTTTTTTTTTTTGCATGATTTTCACATTAATAGAAAATGGTGAA--G-------TAGGGTATGATTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140119664 163 - 143122389 -----------------------ATAGTAACAGTCACCCAGAAAAGAGATTGAGACAATTGATCATCAAGTTGGTTAACTATTATACAC---TGGCTTTGAACATCAAGAACATTTCAAA-CGAGGGAC--TTTTTTTTTTTTTT--TGCATGATTTTCACATTAATAGAAAATGGTGAA--G-------TAGGGTATGATTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16835719 161 - 229590362 -----------------------ATAGTAACAGCCACCCAGAAAAGAGATAGAAACAATTGATCATCAAGTTGGTTAACTGTTATGTGC---TGGCTTTGAACATCAAGAACATTTCAAA-CGAGGGAC----TTTTTTTTTTTT--TGCATGATTTTCACATTAATAGAAAATGATGAA--G-------TAGGATATGATTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223596501 161 - 227556264 -----------------------ATAGTAACAGCCACCCAGAAAAGAGATAGAAACAATTCATCATCAAGTTGGTTAACTGTTATGTGC---TGGCTTTGAACATCAAGAACATTTCAAA-CGAGGGAC----TTTTTTTTTTTT--TGCATGATTTTCACATTAATAGAAAATGATGAA--G-------TAGGATATGATTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16647505 165 - 220367699 -----------------------ATAGTAACAGCCACCCAGAAAAGAGATAGAAACAATTGATCATCAAGTTGGTTAACTGTTATGTGC---TGGCTTTGAACATCAAGAACATTTCAAA-cgagggactttttttttttttttt--tgcatgatttTCACATTAATAGAAAATGATGAA--G-------TAGGATATGATTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82447267 164 + 85787240 -----------------------ATAGTAACAGCCACCCAGAAAAGAGATAGAAACAATTGATCATCAAGTTGGTTAACTGTTATGTGC---TGGCTTTGAACATCAAGAACATTTCAAA-CGAGGGAC-TTTTTTTTTTTTTTT--TGCATGATTTTCACATTAATAGAAAATGATGAA--G-------TAGGATATGATTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14128747 150 - 49578535 -----------------------ATAGTAACAGTCGACCAGAAAAGAGATTGAAACAATTGATCATCAAGCTAG--------TATGTAC---TGGCTTTGAACATCAAGAACTTTTCAAA-CGAGGAAT--------TTTTTTTT--TGCATGATTTTTACATTAATAGAAAATGGTGAAGTG-------TAGGGGATGA-TG i calJac3.chr19 C 0 C 0 s mm10.chr1 178718710 156 + 195471971 -----------------------ATAGCAGTAG--AACTAAAGAAGAAACTGGTACCTCTGCTC-TCAAATCGGTTA---GTAATGCAT---TGCTACTGAGCATGAAGGCCATTTCAAG-TGTGTGAA----------TCCTTT--AGCATAAATCTTACATCACTGAGAAGAGATGAT--GTGGTAGATAGTATATGGTTA i mm10.chr1 I 114 C 0 s canFam3.chr7 36297439 162 + 80974532 GTAACATAATACTAAAAAAATTACTAGTAATAGTAACC--AAAGAAAGACTGGCACAACTGCTTATCTGGTTGGTTAGCTGTCCTGTGCTGTTGGCTTTGGGCTTCGAGAA----------TGAGGGTT----------CTCCTG--TGTGTAAGT--------AATGGGAAATGGAAGA--G-------TAGGGTGTGATTA i canFam3.chr7 C 0 I 40 a score=925826.000000 s hg38.chr1_KI270759v1_alt 119431 270 + 425601 GATTTTCCCATTTGCTGACAGTTCACTTTGAATAAAGGTGGACTTAATGATGTACTTTACCTTATAAAGTATGGAGTACATGAAACCCAATAAAAACTCTTGGGTGAAACCCTAGCTTTGTAGGTTGAGGCAGTGGAACCTTCATGTATATTTGAAGAGCAGTTAGTGGATTCTGGATTATGCATAGAATTG-----AACCCTGAAACAGAAAATGAATCTTTTGGGTGACCTCATATCTTTGCATTGATTTTCT--TTCCCAAATAACCATTAAAA s panTro4.chr1 224870112 270 + 228333871 GATTTTCCCATTTGCTGACGGTTCACTTTGAATAAAGGTTGACTTAATGATGTACTTTACCTTATAAAGTATGGAGTGCATGAAACCCAATAAAAACTCTTGGGTGAAACCCTAGCTTTGTAGGTTGAGGCAGTGGAACCTTCATTTATGTTTGAAGAACAGTTAGTGGATTCTGGATTATGCATAGAATTG-----AACCCTGAAACAGAAAATGAATCTTTTGGGTGACCTCATATCTTTGCATTGATTTTCT--TTCCCAAATAACCATTAAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226226610 270 - 229942017 GATTTTCCCATTTGCTGACAGTTCACTTTGAATAAAGGTTGACTTAATGATGTACTTTACCTTATAAAGTATGGAGTGCATGAAACCCAATAAAAACTCTTGGGTGAAACCCTAGCTTTGTAGGTTGAGGCAGTGGAACCTTCGTTTATATTTGAAGAGCAGTTAGTGGATTCTGGATTATGCATAGAATTG-----AACCCTGAAACAGAAAATGAATCTTTTGGGTGACCTCATATCTTTGCATTGATTTTCT--TTCCCAAATAACCATTAAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140119827 270 - 143122389 GATTTTCCCAGTTGCTGACGGTTCACTTTGAATAAAGGTTGACTTAATGATGTACTTCACCTTATAAAGTATGGAGTGCATGAAACCCCATAAAAACTCTTGGGTGAAACCCTGGCTTTGTAGGTTGAGGTGGTGGAACCTTCATTTATATTTGAAGAGCAGTTAGTGGATTCTGGATTATGCATAGAATTG-----AACCCTGAAACAGAAAATGAATCTTTTGGGTGACCTCATATCTTTGCATTGATTTTCT--TTCCCAAATAACCATTAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16835880 270 - 229590362 GATTTTCCCATTTGCTGATGGTTCACTTTGAATAAAGATTTACTTAATGATGTACTTTACTTTATAAAGTATGAAGTGCATAAAACCCAATAAAAACTCTCGGGTGAAACCCTAGCTTTGTAGGTTGAGGCAGTGGAACCTTCATTCATATTTGAAGAGCAGTTAGTGGATTCTGGATTATGCATAGAATTG-----AACCCTGAAACAGAAAATGAATCTTTTGGGTGACCTCATATCTTTGCATTGATTTTCT--TTGCCATATAACCATTAAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223596662 270 - 227556264 GATTTTCCCATTTGCTGATGGTTCACTTTGAATAAAGATTTACTTAATGATGTACTTTACTTTATAAAGTATGAAGTGCATGAAACCCAATAAAAACTCTCGGGTGAAACCCTAGCTTTGTAGGTTGAGGCAGTGGAACCTTCATTCATATTTGAAGAGCAGTTAGTGGATTCTGGATTATGCATAGAATTG-----AACCCTGAAACAGAAAATGAATCTTTTGGGTGACCTCATATCTTTGCATTGATTTTCT--TTGCCATATAACCATTAAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16647670 270 - 220367699 GATTTTCCCATTTGCTGATGGTTCACTTTGAATAAAGATTTACTTAATGATGTACTTTACTTTATAAAGTATGAAGTGCATGAAACCCAATAAAAACTCTCGGGTGAAACCCTAGCTTTGTAGGTTGAGGCAGTGGAACCTTCATTCATATTTGAAGAGCAGTTAGTGGATTCTGGATTATGCATAGAATTG-----AAccctgaaacagaaaatgaatctTTTGGGTGACCTCATATCTTTGCATTGATTTTCT--TTGCCATATACCCATTAAAa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82447431 270 + 85787240 GATTTTCCCATTTGCTGATGGTTCACTTTGAATAAAGATTTACTTAATGATGTACTTTACTTTATAAAGTATGAAGTGCATGAAACCCAATAAAAACTCTCGGGTGAAACCCTAGCTTTGTAGGTTGAGGCAGTGGAACCTTCATTCATATTTGAAGAGCAGTTAGTGGATTCTGGATTATGCATAGAATTG-----AACCCTGAAACAGAAAATGAATCTTTTGGGTGACCTCATATCTTTGCATTGATTTTCT--TTGCCATATAACCATTACAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14128897 269 - 49578535 GATTTTCCCATTTGCTGACGGTTCACTTTGAATAAAGATTGACTTAATGATGTACTTTACCTT-TAAAGTATGAAGTGCATGAAACCCGATAAAAACTCTCGGGTGAAACCCTAGCTTTGTAGGCTGAGGCAGTGGAACCTTCATTTTTATGTGAGGAGCAGTTAGTGGATTCTGGATTATGCATAGAATTG-----AAGCAGGAAGCAAAAGATGGGTCTTTTGGGTGACCTCATATCTTTGCATTGATTTTCT--TTCTCAAAGAACCATTAAAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178718866 249 + 195471971 GATTTCCCCTTGCGCTGACTTCTCGC------------------TAATTACATACTTTGCTTTCTATCATAAAAAGTACACAAAACCCAAT----------GGAGGAGACCCTGTCATTGAAGGTTGAGACAATGGAAATTTCACTGTTATTTGAAAAGCAATGAGTAGATACTGTATCATGCGTGGAGTTGCCTCAAACCTTGGAAAAGAAAATGAATCCTTCAGATGGCCTCATAGCTTCACACTGAGTTTTCAATTCCCAAATAATCCAAAAAA i mm10.chr1 C 0 I 22 e canFam3.chr7 36297601 40 + 80974532 I a score=8679.000000 s hg38.chr1_KI270759v1_alt 119701 4 + 425601 CTCA s panTro4.chr1 224870382 4 + 228333871 CTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226226880 4 - 229942017 CTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140120097 4 - 143122389 CTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16836150 4 - 229590362 CTTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223596932 4 - 227556264 Ctta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16647940 4 - 220367699 ctca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82447701 4 + 85787240 CTTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14129166 4 - 49578535 ACCA i calJac3.chr19 C 0 C 0 e mm10.chr1 178719115 22 + 195471971 I e canFam3.chr7 36297601 40 + 80974532 I a score=635607.000000 s hg38.chr1_KI270759v1_alt 119705 304 + 425601 TG---------------GGttttgtttttgt----------tttttttgagatggagtctcgctctgtcgcccaggctggagtgcagtggtgcaatctcggctcactgcaagctccacctcccaggttcaagcgattttcctggctcagcctcccgagtagctgggactacaggcg-tccaacaccacacccggctaatttttgtatttttagtagagacggggtttca------ccgtgttggccaagatggtctcgatctcctgacctcatgatcctcccgcctccgcctctcaaagtgctgggattacaggcgtgagccatggcgcccagcTG s panTro4.chr1 224870386 304 + 228333871 TG---------------GGttttgtttttgt----------tttttttgagatggagtctcgctctgtcgcccaggctggagtgcagtggtgcaatctcggctcactgcaagctccacctcccaggttcaagcaatcttcctggctcagcctccccagtagctgggactacaggcg-tcccccaccacacccggctaatttttgtatttttagtagagacggggtttca------ccgtgttggccacgatggtctcgatctcctgacctcatgatccgcccgcctccacctcccaaagtggtgggattacaggcgtgagccatggcacccagcTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226226884 304 - 229942017 TG---------------GGttttgtttttgt----------tttttttgagatggagtctcgctctgtcgcccaggctggagtgcagtggtgcaatctcgactcactgcaagctctgcctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggactacaggag-tcccccaccatgcccagctaatttttgtatttttagtagagacggggtttca------ccatgttggccaagatggtctcgatctcctgacctcatgatccgcccgcctccgcctctcaaagtgctgggattacagccgtgagccatggcgcccagctA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140120101 303 - 143122389 TG---------------Gtttttgtttttg-----------tttttttgacatggaatctcgctctgtcgcccaggctggagtgcagtggtgccatctcggctcactacaagttccacctcccaggttcaagcgattctcctggctcagcctcccgagtagctgggactacaggcg-tcccccaccatgcctggctaatttttgtatttttagtagagacatggtttca------ccgtgttggccaagatggtctcgatctcctgacctcgtgatccgcctgtctcagcctctcaaagtgctgggattacaggcgtgagccaccgcacgcagcTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16836154 335 - 229590362 tgttttgttttgttttgttttttgttgttgttgtttttgtttttttttgagacagagtctcactctgtcacccaggctggagtgctatggtgggatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacatgtg-ccccccaccaagccctgctaatttttgtatttttagtagagatagggtgtcagctggtacgaattagctgggatggtctcgatctcctgacctcctgatccgcccgcctcggcctcccaaagtgctgggatgacaggcctgagcccccgcgcccggcTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223596936 335 - 227556264 tgttttgttttgttttgttttttgttgttgttgtttttgtttttttttgagacagagtctcactctgtcacccaggctggagtgctatggtgggatctcggctcactgcaagccccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacatgtg-ccccccaccaagcccagctaatttttgtatttttagtagagatagggtgtcagctgggacgtgttagccgggatggtctcgatctcctgacctcctgatccgcccgcctcggcctcccaaagtgctgggatgacaggcctgagcccccgcgcccggcTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16647944 326 - 220367699 tg------tttgttt--gtttttgttgttgttg-tttgggttttttttgagacagagtctcactctgtcacccaggctggagtgctatggtgggatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacatgtg-ccccccaccaagcccagctaatttttgtatttttagtggagatagggtgtCAGCTGGGacgtgttagctgggatggtctcgatatcctgacctcctgatccgcccgcctcggcctcccaaagtgctgggattacaggcctgagccactgtgcccggctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82447705 327 + 85787240 TGTTTTGTTttgtttt-gttgttgttgttgttg--------tttttttgagacagagtctcactctgtcacccaggctggagtgctatggtgggatctcggttcactgcgagctccgcctcccaggttcacgccattctcctgcttcagcctcccgagtagctgggactacatgtgcccccccaccaagcccagctaatttttgtatttttagtagagacggggtgtcagctgggacatgttagctgggatggtctcgatctcctgacctcctgatccgcctgcctcggcctcccaaagtgctgggattacaggcctgagccaccatgcccggcTG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178719115 22 + 195471971 I e canFam3.chr7 36297601 40 + 80974532 I e calJac3.chr19 14129170 0 - 49578535 C a score=234938.000000 s hg38.chr1_KI270759v1_alt 120009 77 + 425601 TGTTTTTT-TATTCATGGAGAAAATTAGCTTCTGTAGAATTTTCATCTACATTCAGAGCAAGAGTTTGAAAAATGGTG s panTro4.chr1 224870690 77 + 228333871 TGTTTTTT-TATTCATGGAGAAAATTAGCTTCTGTAGAATTTTCATCTACATTCAGAGCAAGAGTTTGAAAAATGGTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226227188 77 - 229942017 TGTGTTTT-TATTCATGGAGAAAATTAGCTTCTGTAGAATTTTCATCTACATTCAGAGCAAGAGTTTGAAAAATGGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140120404 77 - 143122389 TGTTTTTT-TATTCAAGGAGAAAATTAGCTTCTATAGAATTTTCATCTATATTCAGAGCAAGAGTTTGAAAAACGGTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16836489 77 - 229590362 TGTTTTTT-CATTCATGGAGAAAATTAGCTTCTGGAGAATTTTCATCTACATTCAGAGCAAGAGTTTGAAAAATGGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223597271 77 - 227556264 TGTTTTTT-CATTCATGGAGAAAATTAGCTTCTGGAGAATTTTCATCTACATTCAGAGCAAGAGTTTGAAAAATGGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16648270 77 - 220367699 tgtTTTTT-CATTCATGGACAAAATTAGCTTCTGGAGAATTTTCATCTACATTCAGAGCAAGAGTTtgaaaaatggtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82448032 76 + 85787240 TGTTTTTT-CATTCATGGAGAAAATTAGC-TCTGGAGAATTTTCATCTACATTCAGAGCAAGAGTTTGAAAAATGGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14129170 78 - 49578535 TGTTTTTTAAATTCATGGACAAAATTAGCTTCTGGAGAATTTTCATCTACATTCAGAGCAAGAGTTTGAAAAATGGTg i calJac3.chr19 C 0 I 301 e mm10.chr1 178719115 22 + 195471971 I e canFam3.chr7 36297601 40 + 80974532 I a score=824744.000000 s hg38.chr1_KI270759v1_alt 120086 326 + 425601 AAAATGGACAAAGATCACATGAGCACAAAGACACTGTCAAGTTTTGGCAGAGCTGGTATCGCCAGTTCCATGGCGTTGGTGAGCACAGAGACTTCCAGTTCTGCCCTCAGACATCACTTCTAAATTGTCATATTTTTGGTGTTCAGCTTTTATGTTTAGTTGACAGCCTTTC-TACCAAATTCTAATCAGATTTCCAAGTAAAATTATATTAAGGGCATTTTTT--ATTTTCCGTGATTTTATTTAAATTTTCCTGTTTTCTTAATATAAACAAATACCTTTCCATTCTGTTATCTCAGGTTCTGATGACTTCAGATCAGAACTTACT----A s panTro4.chr1 224870767 331 + 228333871 AAAATGGACAAAGATCACATGAGCACAAAGACACTGTCAAGTTTTGGCAGAGCGGGTGTCGCCAGTTCCATGGCGTTGGTGAGCACAGAGACTTCCAGTTCTGCCCTCAGACATCACTTCTAAATTGTCATATTTTTGGTGTTCAGCTTTTATGTTTAGTTGACAGCCTTTC-TACCAAATTCGAATCAGATTTCCAAGTAAAATTATATTAAGGGCATTTTTT-TATTATCCGTGATTTTATTTAAATTTTCCCGTTTTCTTAATATAAACAAATGCCTTTCCATTCTGTTTTCACAGGTTCTGATGACTTCAGATCAGAACTTACTCACTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226227265 331 - 229942017 AAAATGGACAAAGATCACATGAGCACAAAGACACTGTCAAGTTTTGGCAGAGCAGGTGTCACCAGTTCCACGGCATTGGTGAGCACAGAGACTTCCAGTTCTGCCTTCAGACATCACTTCTAAATTGTCATATTTTTGGTGTTCAGCTTTTATCTTTAGTTGACAGCCTTTTGTACCAAATTCTAATCAAATTTCCAAGTAAAATTATATTAAGGGCATTTTTT-TATTATTCGTGATTTTACTTAAATTTTCCTG-TTTCTTAATATAAACAAATGCCTTTCCATTCTGTTATCACAGGTTCTGATGACTTTAGATCAGAACTTACTCGCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140120481 326 - 143122389 AAAATGGACAAAGATCACATGAGCACAAAGACGCTGTCAAGTTTTGGCAGAGCAGGTGTCGCCAGTTCCACGGCACTGGTGAGCACAGACACTTCCAGTTCTGCCTTCAGACATCACTTCTAAATTATCATATTTTTGGTGTTCAGCTTTTATGTTTAGTTGACAGCCTTTC-TACCAAATTCTAATCAAATTTCCAAGTAAAATTATATTAAGGGCATTTTTT--ATTATCCATGATTTTATTTAAATTTTCCCGTTTTCTTAATGTAAACAAATGCCTTTCCATTCTGTTATCATAGGTTCTGATGACTTCAGATCAGAACTTACT----A i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16836566 307 - 229590362 AAAATGG-----------------ACAAAGACACTGTCACGCTTTGGCAGAGCAGGCGTGGCCAGTTCCACGGCATTGAGGAGCACAGAGACTCCCAGTTCTGCCTTCAGACGGCACTTCTAGATTGTCATGTTTTTAGTGTTCAGCTTTTATGTTCAGTTGACAGCCTTTC-TACCAAATTCAAATCAAATTTCCAAGTAAAATTATATTAAGGGCATTTTTTTTATTATCCATGATTTTATTTAAATTTTCC--------TAATATAAACAAATGCCTTTCCATTCTGATATCACAGCTTCTGATGACTTCAGATCAGAACTTACTCACTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223597348 307 - 227556264 AAAATGG-----------------ACAAAGACACTGTCACGCTTTGGCAGAGCAGGCGTGGCCAGTTCCACGGCATTGAGGAGCACAGAGACTCCCAGTTCTGCCTTCAGACGGCACTTCTAGATTGTCATGTTTTTAGTGTTCAGCTTTTATGTTCAGTTGACAGCCTTTC-TACCAAATTCAAATCAAATTTCCAAGTAAAATTATATTAAGGGCATTTTTTTTATTATCCATGATTTTATTTAAATTTTCC--------TAATATAAACAAATGCCTTTCCATTCTGATATCACAGGTTCTGATGACTTCAGATCAGAACTTACTCACTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16648347 303 - 220367699 aaaatgg-----------------acaaagacaCTGTCACGCTTCGGCAGAGCAGGCGTGGCCAGTTCCACGGCATTGAGGAGCACAGAGACTCCCAGTTCTGCCTTCAGACGGCACTTCTAGATTGTCATGTTTTTAGTGTTCAGCTTTTATGTTCAGTTGATAGCCTTTC-TACCAAATTCAAATCAAATTTCCAAGTAAAATTATATTAAGGGCAttttttttATTAtccatgattttatttaaattttcc--------taaTATAAACAAATGCCTTTCCATTCTGTTATCACAGGTTCTGATGACTTCAGATCAGAACTT----ACTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82448108 299 + 85787240 AAAATGG-----------------ACAAAGACACTGTCACGCTTCGGCAGAGCCGGCATGGCCAGTTCCACAGCATTGACTAGC----AGACTCCCAGTTCTGCCTTCAGACGGCACTTCTAGATTGTCATGTTTTTGGTGTTCAGCTTTTATGTTCAGTTGACAGCCTTTC-TACCAAATTCAAATCAAATTTCCAAGTAAAATTATATTAAGGGCCTTTTTTTTATTATCCATGATTTTATTTAAATTTTCC--------TAATATAAACAAATGCCTTTCCATTCTGTTATCACAGGTTCTGATGACTTCAGATCAGAACTT----ACTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14129549 321 - 49578535 AAAATTG------ACCACAGGAGCACAAAGACACCGTCCAGTTTTGGCAGAGCAGACGGCGCCAGTTCCATGGCACTGACGAGGAGGGAGCCTTTCAGTCCTGCCTTCGGACACCACTTCTA---TGCTGTGGGTTTGGCGTTCAGCTTTTATATTTAGTTGACAACCTTTG-TACCAAATTCAAATCAAATTTCCAAGTAAAATCAAATTAAGGTTTTTTTTT-AATTCTCCACGACTTTGTTTAAATTTTCCTA-TTGCTTAATATAAATAAATGCCTTTCCATTCTGTCATCACAGGTTCTGATGACTTCAGAGCAGAACTTACTCACTG i calJac3.chr19 I 301 C 0 e mm10.chr1 178719115 22 + 195471971 I e canFam3.chr7 36297601 40 + 80974532 I a score=219323.000000 s hg38.chr1_KI270759v1_alt 120412 87 + 425601 TCTTCAAAT-CCTTTATTCTGTTTTTTTGCTCATTATTGACTCTGTTACATTAGTTAGAGCTTCTTTCTCTCTCTCCCCC-TTCCTCTC s panTro4.chr1 224871098 86 + 228333871 TCTTCAAAT-CCTTTATTCTGTTTTTTTGCTCATTATTGACTCTGTTACATTAGTTAGAGCTTCTTtccctctctcccc--ttcctctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226227596 87 - 229942017 TCTTCAAAT-TCTTTATTCTGTTTTTTTGCTCATTATTGACTCTGACACGTTAGTTGGAGCTTctccctctctctccccc-ttcctctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140120807 85 - 143122389 TCTTCAAAT-CCTTTATTCTGTTTTTTTGCTCATTACTGA--CTGTCACATTAGTTAGAGcttctccctctctcttccct-ttcctctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16836873 87 - 229590362 TCTTCAAATCCCTTTATTCTGTTTTTTT-CTCAATATTGACTCCGTCACATTAGTTAGAGCTTctccctccctctccccc-ttcccctc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223597655 85 - 227556264 TCTTCAAAT-CCTTTATTCTGTTTTTTT-CTCAATATTGACTCCGTCACATTAGTTAGAGcttctccctccctctccccc-ttcccct- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16648650 87 - 220367699 TCTTCAAat-cctttattctgttttttt-ctcaatattgaCTCCGTCACATTAGTTAgagcttctccctccctctcccccttttccctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82448407 87 + 85787240 TCTTCAAAT-CCTTTATTCTGTTTTTTT-CTCAATATTGACTCCGTCACATTAGTTAGAGCTTCTCCCTTCCTCTCCCCCCTTCCCCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14129870 85 - 49578535 TCTTCAAAT-CCCTTCATCTGTTCTTTTGCTCATGATTGAGTC-ACCACATGAGTT-GAGCTtctctctctcactctccc-tccccctc i calJac3.chr19 C 0 C 0 s canFam3.chr7 36297641 75 + 80974532 TTTTCAGAC-CCTTTGGCATGTGTGTCAGCTCACTGTTGGGTCCATCCCATGCACGAGCGTTTCTCCCTTCATCTC------------- i canFam3.chr7 I 40 C 0 e mm10.chr1 178719115 22 + 195471971 I a score=226072.000000 s hg38.chr1_KI270759v1_alt 120499 83 + 425601 TCT------------------------CCCTCCC-TCCTCCCTCCCTTCTTTCCTC--CCTT------CCTGTTTTTCCAT-CTGCTCTTGAAGATTCCTACCTTTACACAGTGTTT s panTro4.chr1 224871184 83 + 228333871 tct------------------------ccctccc-tcctccctcccttctttcctc--cctt------cctGTTTTTCCAT-CTGCTCTTGAAGATTCCTACCTTTACACAGTGTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226227683 83 - 229942017 tct------------------------ccctccc-tcctccctcccttctttcctc--cctt------cctGTTTTTTTAT-CTGCTCTTGAAGATTCCTACCTGTACACAGTGTTT i ponAbe2.chr1 C 0 T 2598 s nomLeu3.chr5 140120892 82 - 143122389 tct------------------------ccctccc-tcctccctccc-tccttcctc--cctt------cctGTTTTTCCAT-CTGCTCTGGAAGATTCCTACCTTTACAGAGTGTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16836960 107 - 229590362 cctccctcctcctctcccccttcccccccctccc-tcctccctccctgctttcctc--cctt------cctGTTTTTCCAT-CTGCTCTTGAAGATTCCTACCTCTACACAGTGTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223597740 80 - 227556264 ---------------------------ccctccc-tcctccctcccttctttcctc--cctt------cctGTTTTTCCAT-CTGCTCTTGAAGATTCCTACCTCTACACAGTGTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16648737 107 - 220367699 cctcccttctcctcttccctttcccctccctccc-tcctccctcccttctttcctc--cctt------cctgttTTTCCAT-CTGCTCTTGAAGATTCCTACCTTTACACCGTGTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82448494 107 + 85787240 CCTCCCTTCTCCTCTCCCCCTTTCCCTCCCTCCC-TCCTCCCTCCCTTCTTTCCTC--CCTT------CCTGTTTTTCCAT-CTGCTCTTGAAGATTCCTACCTCTACACAGTGTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14129955 102 - 49578535 cct--------ctctccctccccctctccctccctttctcttgctctccttccctc--CCTTG----CTCTGTTTATCCAT-CTCCTCTTGAAGATTCCTACGTTTACACAGTGTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178719137 81 + 195471971 ------------------------TTTCCCTTCA-GTCTGTCTCCTTCCTGTCCCCGTCCTTAAACTCAATGACTTTCCAT-------TTGAAGATC----CAGTTGCACTATTTTT i mm10.chr1 I 22 I 3 s canFam3.chr7 36297716 80 + 80974532 ----------------------------TCCCCT-TGATTTTCCAGTAATAGCATC--ATTT------TGTACTTACCAATTCTATTCTCGAAGATTCTGACCTCTACACAATGTAG i canFam3.chr7 C 0 C 0 a score=290059.000000 s hg38.chr1_KI270759v1_alt 120582 88 + 425601 TCCTGTTGACGAAAAATATGTCTCTCCTGGGTCTGGAATTTTCTGGATAAATGTTGGTGTTCATCTCCATACAGCGTCACTCTCATTC- s panTro4.chr1 224871267 88 + 228333871 TCCTGTTGACGAAAAATATGTCTCTCCTGGGTCTGGAATTTTCTGGATAAATGTTGGTGTTCATCTCCATATAGCATCACTCTCATTC- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226225168 88 - 229942017 TCCTGTTGATGAAAAATATGTCTATCCTGGGTCTGGAATTTTCTGGATAAATGTTGGTGTTCATCTCCATATAGCATCGCTCTCATTC- i ponAbe2.chr1 T 2598 I 3364 s nomLeu3.chr5 140120974 88 - 143122389 TCCTGTTGACGAAAAAGATGTCTATCCTGGGTCTGGAATGTTCTGGATAAATGTTGGTGTTCATCTCCATGTAGCGTCGCTCTCATTC- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837067 86 - 229590362 TCCTGTTGACGAAAA--ATGTCTATCCTGGGTCTGGAATTTTCTGGATGAATGTTGGTGTTCATCTCCCTATAGCGTCGCTGTCATTC- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223597820 86 - 227556264 TCCTGTTGACGAAAA--ATGTCTATCCTGGGTCTGGAATTTTCTGGATGAATGTTGGTGTTCATCTCCCTATAGCGTCGCTGTCATTC- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16648844 88 - 220367699 TCCTGTTGACGAAAAATATGTCTATCCTGGGTCTGGAATTTTCTGGATGAATGTTGGTGTTCATCTCCCTATAGcgttgctgtcattc- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82448601 86 + 85787240 TCCTGTTGACGAAAA--ATGTCTATCCTGGGTCTGGAATTTTCTGGATGAATGTTGGTGTTCATCTCCCTATAGCGTCGCTGTCATTC- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14130057 88 - 49578535 TCCTATTGAGGGAAAGTATGTTTCTCCTGGGTTTGGAATGTTCTGGATAAATGTTGGTGTTCTTCTTCATATGGTGTTGCTCTCATTC- i calJac3.chr19 C 0 C 0 s mm10.chr1 178719221 80 + 195471971 TCTTGTTGATTAAAA--ATGTCTGTCCTGGGTTT-GAATTTTCTGGATAAACTCTAGTGTTCA-----ATAGAGCATTGCTCTCtgtg- i mm10.chr1 I 3 C 0 s canFam3.chr7 36297796 83 + 80974532 --AGGTTGATTACAAATCCACGTGTCCTGGTTTTGGCATCTTCTGGGTCGATGTGGGTGTTC---TCAATATCAGGT-GCCCTCAGATA i canFam3.chr7 C 0 C 0 a score=60560.000000 s hg38.chr1_KI270759v1_alt 120670 28 + 425601 CTTTCTCTGGGATCCCTGTTGTCTGCTT s panTro4.chr1 224871355 28 + 228333871 CTTTCTCTGGGATCCCTGTTGTCTGCTT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140121062 28 - 143122389 CTTTCTCTGGGATCCCTGTTGTCTGCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837153 28 - 229590362 ATTTCTCTGGGGTCCCTATTGTCTGCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223597906 28 - 227556264 ATTTCTCTGGGGTCCCTGTTGTCTGCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16648932 28 - 220367699 atttctcTGGGGTCCCTGTTGTCTGCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82448687 28 + 85787240 ATTTCTCTGGGGTCCCTGTTGTCTGCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14130145 21 - 49578535 ATTTCTTTGTGATCCCTGTTG------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178719301 24 + 195471971 gttact----aatcttggttgtcaactt i mm10.chr1 C 0 I 477 s canFam3.chr7 36297879 28 + 80974532 CACTTTGTGGGGTCCATTCGCCCTGGTT i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226225256 3364 - 229942017 I a score=117526.000000 s hg38.chr1_KI270759v1_alt 120698 43 + 425601 TCTCTTCCACACTTGCCAAGCTGTCCCTCACTTTCTCCCACTG s panTro4.chr1 224871383 43 + 228333871 TCTCTTCCACACTTGCCAAGCTGTCCCTCACTTTCTCCCACTG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140121090 43 - 143122389 TCTCTTCCTCACTTGCCAAGCTGTCCCTCACTTTCTCCCGCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837181 43 - 229590362 TCTCTTCCTCACTTGCCAAGCTGTCCCTCACTTTCTCCCACTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223597934 43 - 227556264 TCTCTTCCTCACTTGCCAAGCTGTCCCTCACTTTCTCCCACTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16648960 43 - 220367699 TCTCTTCCTCACTTGCCAAGCCGTCCCTCACTTTCTCCCACTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82448715 43 + 85787240 TCTCTTCCTCACTTGCCAAGCTGTCCCTCACTTTCTCCCACTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14130166 43 - 49578535 TCTCTTCCACACTTGCCAAGCAGCCCCTCATTTTCTCCCACCG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36297907 40 + 80974532 TCTCTTTCTCGCCTGCC---TTGTGTCTCATTCCCTTCTGCCA i canFam3.chr7 C 0 C 0 e mm10.chr1 178719325 477 + 195471971 I e ponAbe2.chr1 226225256 3364 - 229942017 I a score=842527.000000 s hg38.chr1_KI270759v1_alt 120741 331 + 425601 ACTCCTC-TAACTCCTTGCCGTCGGCCCAAACACATTCCTTTCTCA-GGAC-GTGATTGTTTTTCTGTCCATCTCAATCTCTTGTGTGGTATCTTCCATCGTTGTTTTTGAATGGCTCCCTGTGTTACCTGAACAGCATTCTTCAGTCCTCTTGAGCATGTCACTGACTGTTGTATGACTGATTTGACCAGTATCCCCTTGGGTCCAGAGGTTGCCGTAGTGTTAAAACCAAGCCCCGCTCAGGCCCTGGGGTCAG-GGCTAGGCTGA-GCAGAGAGGACTGACCTCTGGCTCCCAGGCCCTGCCTTCAGGACCACGTGGCTTCTCTTGTTAGTTC s panTro4.chr1 224871426 331 + 228333871 ACTCCTC-TAACTCCTTGCCATCGGCCCAAACACATTCCTTTCTCA-GGAC-GTGATTGTTTTTCTGTCCATCTCAATCTCTTGTGTGGTATCTTCCATCGTTGTTTTTGAATGGCTCCCTGTGTTACCTGAACAGCATTCTTCAGTCCTCTTGAGCATGTCACTGACTGTTGTATGACTGATTTGACCAGTATCCCCTTGGGTCCAGAGGTTGCCGTAGTGTTAAAACCAAGCCCCGCTCAGGCCCTGGGGTCAG-GGCTAGGCTGA-GCAGAGAGGACTGACCTCTGGCTCCCAGGCCCTGCCTTCAGGACCACGTGGCTTCTCTTGTTAGTTC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140121133 308 - 143122389 ACTCCTC-GAACTCCTTGCGGTTGGCCCAAACGCATTCCTTTCTCA-GGAT-GTGATTGCGTTTCTGTCCGTCGCAGTCTCTTGTGCGGAATCTTCCAT-----------------------TATTACCTAAACAGCATTCTTCAGTCCTCTTGAGCATGTCACTGACTGTTGTGTGACTGACTTGACCAGCATCCCCTTGGGTCCAGAGGTTGCCGTGGTGTTAAAACCAAGCCCCGCTCAGGCCCTGGGGTCAG-GGTTAGGCTGA-GCAGAGAGGACTGACCCCTGGCTCCCAGGCCCTGCCTTCAGGACCACGTGGCTTCTCTTGTTAGTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837224 330 - 229590362 ACTCCTC-TGACTCCTTGCCGTCGGCCCAAACACATTCCTTTCTCA-GGAT-GTGACTGTGTTTCTGTCCATCTCAATCTCTTGTGCGGTATCTTCCATCGTTGTTTTTGAATGGCTCCCTGTGTTACCTAAACAGCATTCTTCAAGCCTCTTGAGCATGTCACTGACTGTTGTGTGACTTATCTGACCAGTATCCCCTTGGGTCCAGAGGTTGGCGTGGTGTT-AAACCAAGCCCCGCTCAGGCCCTGGGGTCAG-GGCTAGGCTGA-GCAGAGAGGACTGACCCCTGGCTCCGAGGCTCTGCCTTCAGGACCACGTGGCTTCTCTCGGTAGTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223597977 330 - 227556264 ACTCCTC-TGACTCCTTGCCGTCGGCCCAAACGCATTCCTTTCTCA-GGAT-GTGACTGTGTTTCTGTCCATCTCAATCTCTTGTGCGGTATCTTCCATCGTTGTTTTTGAATGGCTCCCTGTGTTACCTAAACAGCATTCTTCAAGCCTCTTGAGCATGTCACTGACTGTTGTGTGACTTATCTGACCAGTATCCCCTTGGGTCCAGAGGTTGGCGTGGTGTT-AAACCAAGCCCCGCTCAGGCCCTGGGGTCAG-GGCTAGGCTGA-GCAGAGAGGACTGACCCCTGGCTCCGAGGCTCTGCCTTCAGGACCACGTGGCTTCTCTCGGTAGTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649003 330 - 220367699 ACTCCTC-TGACTCCTTGCCGTCGGCCCAAACGCATTCCTTTCTCA-GGCT-GTGACTGTGTTTCTGTCCATCTCAATCTCTTGTGCGGTATCTTCCATCGTTGTTTTTGAATGGCTCCCTGTATTACCTAAACAGCATTCTTCAAGCCTCTTGAGCATGTCACTGACTGTTGTGTGACTTATCTGACCAGTATCCCCTTGGGTCCAGAGGTTGGCGTGGTGTT-AAACCAAGCCCCGCTCAGGCCCTGGGGTCAG-GGCTAGGCTGA-GCAGAGAGGACTGACGCCTGGCTCCGAGGCTCTGCCTTCAGGACCACGTGGCTTCTCTTGGTAGTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82448758 330 + 85787240 ACTCCTC-TGACTCTTTGCCGTCGGCCCAAATGCATTCCTTTCTCA-GGAT-GTGACTGTGTTTCTGTCCATCTCAATCTCTTGTGCGGTATCTTCCATCGTTGTTTTTGAATGGCTCCCTGTGTTACCTAAACAGCATTCTTCAAGCCTCTTGAGCATGTCACTGACTGTTGTGTGACTTATGTGACCAGTATCCCCTTGGGTCCAGAGGTTGGCGTGGTGTT-AAACCAAGCCCCGCTCAGGCCCTGGGGTCAG-GGCTAGGCTGA-GCAGAGAGGACTGACCCCTGGCTCCGAGGCTCTGCCTGCAGGACCACGTGGCTTCTCTTGGTAGTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14130209 326 - 49578535 CCTCCTC-TAAGTCCTTGCCGCTGGCCCAAGCCCCTTCTGTTCTCA-GGGT-GTGCTGATGCTTCTGTCCGCCTCAGTCTC-TGTGCAGTCTCTTCCATCGTAGGTGTTGAATGGCTCCCTGTT---CCTAAA-AGCACTCTTCAGGCCTCTGGAGCGTGTTGCTGACTGTTTTATGATGGATTTGACCATTATCCCCTTGGGTTTAGAGGTTGCTGTGGTGTTAAAACCAAGCCCTGCTCACGTCCTGGGGTCTGTGGCCAGGCTGA-GCAGAGGGGACTGAGCCCTGGCTCCCAGGCCCTGTCCTCAGGACCACGT-GCTTCTCTTGTCAATTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178719802 312 + 195471971 ATTCCTC-TCACCTTTTGTCTTCGTTCCAAATTTATATTTTTCCTA-GGGTCATTACTAATGCTGGCTCTGTCTAATCCTCCCCTGTTAGCCCTTCTATTTTTG-TCTTAGGTGGCTCCTC-TGTTGCCT-AACAGTTTGATCAAATTCTCTTGAACTTGTACCTGGCTGTTATATGACTGATTTGGCCAGTAGTACC-TGAAGCTGGAGATTGCCATTGTAGT-AAAC-----------CAGGTCTCAGGGTCAA-GGGTAAACTGATTTTTAGGGGACTGACTCCTGAT-----GTCACTGCTGTCAGGACCATGTTTCCTCTCTGCTCAATCC i mm10.chr1 I 477 C 0 s canFam3.chr7 36297947 315 + 80974532 GCTCCCCGCAACCGCTTGCCTTTGGCCAGATCTCCTTCTTTCCCGAGGGAT-GTTATTAGACTTCTGTCCCTCTCAACCTGTTGTGCAGTTTCTTCCATGCATGATTTTAGATCCCTCCTCGTATTACCC-AACTGCTTTCTCCAAGACCCTAGAACACGTCACAGACTGTTA-ACGACTGATG-GACCAGTTTTCCCCTTGA---------------GGCATTGAAACTAAGAGCAGCTCAGGTCCTGGGTTCGGGGGCTAAGCCAA-GCTGTGAGAGTGGTCTCCTTGCTCTGAAGTCCTG-CTTCAGAACGGTGTTGCTCCGTTCATCACACC i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226225256 3364 - 229942017 I a score=485379.000000 s hg38.chr1_KI270759v1_alt 121072 155 + 425601 -CCTGTGGGGCCTGCTCTTCGTGCTGTGTATCCTCATG----TGACCATACGGAGAGCTGTTACT----------------GGTCTGATGACCATTATTGCCGCACTCTCGCTGAGAAGCAACT-CAGATAGCGCCTTGCTGTGATGGTTTCAGCAAATGCTTTTCATATATGATCT s panTro4.chr1 224871757 155 + 228333871 -CCTGTGGGGCCTGCTCTTCGTGCTGTGTATCCTCACG----TGACCGTATGGAGAGCTGTTACT----------------GGTCTCATGACCATTATTGCCGCACTCTCGCTGAGAAGCAACT-CAGATAGCGCCTTGCTGTGATGGTTTCAGCAAATGCTTTTCATATATGATCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226228620 153 - 229942017 -CCTGTGGGGCCTGCTTTTCGTGCTGTGTATCCTC--G----TGACCATATGGAGAGCTGATACT----------------GGTCTGATTACCATTATTGCCACACTCTCGCTGAGAACCAACT-CAGACAGCGCCTTGCTGTGATGGTTTCAGCAAATGCTTTTCATATATAATCT i ponAbe2.chr1 I 3364 C 0 s nomLeu3.chr5 140121441 155 - 143122389 -CCTGTGGGGCCTGCTCTTCGTGCTGTGTATCCTCATG----TGACCATATGGAGAGCTGTTACT----------------GGTCTGATTACCATTATTGCCACACTCTTGCTGACAACCAACT-CAGATAGCGCCTTGCTGTGATGGTTTCATCAAATGCTTTTCGTATATAATCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837554 155 - 229590362 -CCTGTGGGGCCTGCTCTTCGTGCTGTGTATCCTCATG----TGACCATATGGAGAGCTGTTACT----------------GGTCTGATTACCATTATTGCCACACTCTTGCTGACAAGCAACT-CAGATAGCGCCTTGCTGTGATGCTTTCAGCAAATGCTTTTCATATATAATCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223598307 155 - 227556264 -CCTGTGGGGCCTGCTCTTCGTGCTGTGTATCCTCATG----TGACCATATGGAGAGCTGTTACT----------------GGTCTGATTACCATTATTGCCACACTCTTGCTGACAAGCAACT-CAGATAGCGCCTTGCTGTGATGCTTTCAGCAAATGCTTTTCATATATAATCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649333 155 - 220367699 -CCTGTGGGGCCTGCTCTTCATGCTGTGTATCCTCATG----TGACCATATGGAGAGCTGTTACT----------------GGTCTGATTACCATTATTGCCACACTCTTGCTGACAAGCAACT-CAGATAGCGCCTTGCTGTGATGCTCTCAGCAAATGCTTTTCATATATAATCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82449088 155 + 85787240 -CCTATGGGGCCTGCTCTTCATGCTGTGTATCCTCATG----TGACCATATGGAGAGCTGTTACT----------------GGTCTGATTACCATTATTGCCACACTCTCGCTGACAAGCAACT-CAGATAGAGCCTTGCTGTGATGCTTTCAGCAAATGCTTTTCATATATAATCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14130535 159 - 49578535 -CCTGTGGGGCCTGTTCCTAGCGCTGTGTATCCTCATGTGACTGACTGTTTGGATAGCTGTTACT----------------GGTCTGATTACCATTATTTCCATACTCTCGTCCACAGCCAATT-CAGATAGCATCTCGTTGCGCTGGTTTCAGCAAATGATTTTCATATATAATCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178720114 134 + 195471971 -CCAGTGGA----------------------CTACATG----CAGCCATAGTTACAACGGTCCTC----------------AATCTTATTGCTATTATATATACCATTTTGCTGATAGCCAAATAAAAATAGCTCCTGGTTACACTGGCCCCAGCAAAGGATTTGCACATCTGATCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36298262 136 + 80974532 CCATGTGGCACCTGCTCTTAATGCCGCATATGCATGTG----TGG-TGTGTGCACAGTTATTGCTCCCATGGGCAAGGCCGTGTCTAAAAGCCTCCCTTG-CACATGCTTGCTGATAGCTGACT-CAAATAGTGCCTTGTTGT---------------------------------- i canFam3.chr7 C 0 C 0 a score=14138.000000 s hg38.chr1_KI270759v1_alt 121227 13 + 425601 TGTATGATGAAGG s panTro4.chr1 224871912 13 + 228333871 TGTATGGTGAAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226228773 13 - 229942017 TGTATGGTGAAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140121596 13 - 143122389 TGTATGGTGAAGG i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14130694 13 - 49578535 TGTATGGTGAAGG i calJac3.chr19 C 0 I 312 s mm10.chr1 178720248 13 + 195471971 TGGATAAAGGAGG i mm10.chr1 C 0 C 0 e canFam3.chr7 36298398 0 + 80974532 C e rheMac3.chr1 16837709 0 - 229590362 C e chlSab2.chr25 82449243 0 + 85787240 C e papAnu2.chr1 16649488 0 - 220367699 C e macFas5.chr1 223598462 0 - 227556264 C a score=186903.000000 s hg38.chr1_KI270759v1_alt 121240 219 + 425601 CTTTCTTTAGTCCCTGGGCCCT----------TAACAGTGGTACTTGGTTATATGTTTGGAGTTGATGAAGTCAGAGAAGGATGGGAAGGAGCGTGGAACTGTTC----CTGCTTCTTTTGTTCTTCTGTCAGGTACAGTTCCCTTTAGGGATGCTCCCTTCTTCCCCTTAGAAATACATCAACAA-TATTACCAGAGAAAAACTACCCTAAACATACCACAATTGGTCTCAGG s panTro4.chr1 224871925 219 + 228333871 CTTTCTTTAGTCCCTGGGCCCT----------TAACAGTGGTACTTGGTTATATGTTTGGAGTTGATGAAGTCAGAGAAGGATGGGAAGGAGCGTGGAACTGTTC----CTGCTTCTTTTGTTCTTCTGTCAGGTACAGTTCCCTTTAGGGATGCTTCCTTCTTCCCCTTAGAAATACATCAACAA-TATTACCAGAGAAAAACTACCCTAAACATACCACAATTGGTCTCAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226228786 226 - 229942017 CTTTCTTTAGTCCCTGGGCCCTTAACA---CCTAACAGTGGTACTTGGTTATATGTTTGGAGTTGATGAAGTCAGAGAAGGATGGGAAGGAGTGTGGAACTGTTC----CTGCTTCTTTTGTTCTTCTGTCAGGTACAGTTCCCTTTAGGGATGCTCGCTTCTTCCCCTTAGAAATACATCAACAA-TATTACCGAAGAAAAACTATCCTAAACATACCACAATTGGTCTCAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140121609 226 - 143122389 CTTTCTTTAGTCCCCGGTACCTTAACA---CCTAACAGTGGTACTTGGTTATATGTTTGAAGTTGATGAAGTCAAAGAAGGATGGGAAGGAGCGTGGAACTGTTC----CTGCTTCTTTTGTTCTTCTGTCAGGTACAGTTCCCTTTAGGGATGCTCGCTTATTCCCCTTAGAAATACATCAACAA-TATTACCAGAGAAAGACTATCCTAAACATACCACAGTTGGTCTCAGG i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14131019 215 - 49578535 CTTTCTTTAGTCCCTGGGCACTTAACAACGCACAACAGTGGTACTTGGCTGTGCATTGGGAGTCGA---------GGGAGGATAGGAAGG-GTGTGGAGCTGTTG----ATGCTGCCTCTG---TTCGGTCAGGCACAGTTCCC-TTAGGGCTGCTTGCATCTTGCCCGTATACACACATCAACAG-CATCACCAGAGAAAAACGATCCTAAACACACCACAGTGGGTCCCAGG i calJac3.chr19 I 312 C 0 s mm10.chr1 178720261 214 + 195471971 CTTTCTTCCATCCCTGGGTACTTTACA---CATAATAGTGATACCTGGCTGTGTGCTCTGAGTTTATTAAGCACAAGAAGGATGAGGAAGATCATGAGACTGCCCATAGTTGGTCCCCTTGTTCTCC-ATCAGGCATAGTTCCCTGCAGGGACAGTTGT------------GAAACACATCAACAACCATTACTGG-GAAAAGCCACCTGA---ATACCACAATTGGTCTCAGG i mm10.chr1 C 0 C 0 s canFam3.chr7 36298398 115 + 80974532 -----------------------------------------------------------------------------------------------------------------------TCCACTTAGAGCACACACAGTCCTCCTGAGGGATGTGAGCACCTTCCCGTGATAAACACCTCAGCAGTTAGCACCAGAGAAGAACTATTGGAAACACAGCAGAGCTGGTCTCAGG i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16837709 0 - 229590362 C e chlSab2.chr25 82449243 0 + 85787240 C e papAnu2.chr1 16649488 0 - 220367699 C e macFas5.chr1 223598462 0 - 227556264 C a score=414150.000000 s hg38.chr1_KI270759v1_alt 121459 132 + 425601 TGATCTAGGCGGAGGAAAAATTGAGCTGGGT--GTCTGAGATCCAACTCCTAGGCGTCAATTGACTGTGGAGAGACAGGGCACAAGTTCTGCCTCCAGTTTCACAACTTGGAACAGTTAATGTCCAGCACTGTT---- s panTro4.chr1 224872144 132 + 228333871 TGATCTAGGCGGAGGAAAAATTGAGCTGGGT--GTCTGAGATCCAACTCCTAGGTGTCAATTGACTGTGGAGAGACAGGGCACGAGTTCTGCCTCCAGTTTCACAACTTGGAACAGTTAATGTCCAGCACTGTT---- i panTro4.chr1 C 0 M 318 s ponAbe2.chr1 226229012 132 - 229942017 TGATCTAGGCAGAGGAAAAATTGAGCTGGGT--GTCTGAGATCCAACTCCTAGGTGTCAATTGACTATGGAGAGACAGGGCACAAGTTCTGCCTCCAGTTTCACAACTTGGAACAGTTAATGTCCAGCACTGTT---- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140121835 131 - 143122389 TGATCTAGGCGGAGGAAAAATTGAGCTGGGT--GTCTGAGATCCAACTCCTAGGCATCAATTGACTATGGAGAGACAGGGCATAAGTTCTGCCTCCAGTTTCACAACTTGG-ACAGTTAATGTCCAGCACTGTT---- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837709 132 - 229590362 TGATCTAGGCGGAGGAAAAACTGAGCTGGGT--GTCTGAGATCCAACTCCTAGGCGTCAATTGACTATGGAGAGACAGGGCATGGTTTCTGCCTCCAGTTTCACAGCTTGAAACAGTTAATGTCCAGCACTGTT---- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223598462 132 - 227556264 TGATCTAGGCGGAGGAAAAACTGAGCTGGGT--GTCTGAGATCCAACTCCTAGGCGTCAATTGACTATGGAGAGACAGGGCATGGTTTCTGCCTCCAGTTTCACAGCTTGAAACAGTTAATGTCCAGCACTGTT---- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649488 132 - 220367699 TGATCTAGGCGGAGGAAGAACTGAGCAGGGT--GTCTGAGATCCAACTCCTAGGCGTCAATTGACTATGGAGAGACAGGGCATGGTTTCTGCCTCCAGTTTCACAGCTTGGAACAGTTAATGTCCAGCACTGTT---- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82449243 132 + 85787240 TGATCTAGGCGGAGGAAAAACTGAGCTGGGT--ATCTGAGATCCAACTCCTAGGCGTCAATTGACTATGGAGAGACGGGGCACGGTTTCTGCCTCCAGTTTCACAGCTTGGAACCGTTAATGTCCAGCACTGTT---- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14131234 116 - 49578535 TGATCTGGGTGGAGGAAAAATTGCACTGGGT--ACAAGACCTCCGACTCTTAGGCACCAATTTGCTGTGGAGGGACAGGGCACAGTTTCTGCCTCCAGCTTCACAGCTTGGAACTGTC-------------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178720475 133 + 195471971 AGATGCAGGAGTA-GAAAAATGGAGCCAGGTACACACAAGATTCATCTCTCAATTGCTGACCTATGCTGTAGAGATAGGGCTTCATTTCTGCCTCTGGTGTTACTGACCAGAGTAGCTAATGTCCAGGATTGCA---- i mm10.chr1 C 0 C 0 s canFam3.chr7 36298513 115 + 80974532 TGATGGAGGAGGAGGCAG-ATAGAGCTGGAT--GTGCAAGGTCCAACTCTTTCTGGATAATTCACCGTGGAG-------------CTCCCACCTCCAATTTTATAGACAGA---AGTAAATTCCCA----TGTTAGTG i canFam3.chr7 C 0 C 0 a score=47592.000000 s hg38.chr1_KI270759v1_alt 121591 23 + 425601 TCCATTATGATAGAATGATGCCT s ponAbe2.chr1 226229144 23 - 229942017 TCCATTATGATAGACTGATGCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140121966 23 - 143122389 TCCATTAGGATAGAATGATGTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837841 22 - 229590362 TCCATTATGACAGAATGACGCC- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223598594 23 - 227556264 TCCATTATGACAGAATGATGCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649620 23 - 220367699 TCCATTATGACAGAATGATGCCt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82449375 23 + 85787240 TCCATTATGACAGAATGATGCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14131350 22 - 49578535 TCCA-TGTGGAAGAATGATGCCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178720608 21 + 195471971 TTTTTTAT--TAGATTTATACCT i mm10.chr1 C 0 I 32 s canFam3.chr7 36298628 17 + 80974532 TCTATGATAATAGAATG------ i canFam3.chr7 C 0 C 0 e panTro4.chr1 224872276 318 + 228333871 M a score=18025.000000 s hg38.chr1_KI270759v1_alt 121614 10 + 425601 TTACAAAAAC s ponAbe2.chr1 226229167 10 - 229942017 TTACAAAAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140121989 10 - 143122389 TTACAAAAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837863 10 - 229590362 TTACAAAAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223598617 10 - 227556264 TTACAAAAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649643 6 - 220367699 ttacaa---- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82449398 10 + 85787240 TTACAAAAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14131372 10 - 49578535 CTGCAAAAAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178720629 32 + 195471971 I e canFam3.chr7 36298645 0 + 80974532 C e panTro4.chr1 224872276 318 + 228333871 M a score=54048.000000 s hg38.chr1_KI270759v1_alt 121624 31 + 425601 AAACAggccaggcgtggtggctcacacctgt s ponAbe2.chr1 226229177 31 - 229942017 AAACAggccgggcgtggtggctcacacttgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140121999 31 - 143122389 AAACAggccaggcacagtggctcacacctgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837873 31 - 229590362 AAACAggccgggcgcggtggctcacacctgg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223598627 31 - 227556264 AAACAggccgggcgcggtggctcacacctgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649649 31 - 220367699 aaacaggccgggcgcggtggctcacacctgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82449408 31 + 85787240 AAACAggccgggcgcggtggctcacacctgg i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36298645 8 + 80974532 -----------------------ACACCTAC i canFam3.chr7 C 0 C 0 e mm10.chr1 178720629 32 + 195471971 I e calJac3.chr19 14131382 0 - 49578535 C e panTro4.chr1 224872276 318 + 228333871 M a score=3276.000000 s hg38.chr1_KI270759v1_alt 121655 1 + 425601 a s panTro4.chr1 224872606 1 + 228333871 a i panTro4.chr1 M 318 C 0 s ponAbe2.chr1 226229208 1 - 229942017 a i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140122030 1 - 143122389 a i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837904 1 - 229590362 a i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223598658 1 - 227556264 a i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649680 1 - 220367699 a i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82449439 1 + 85787240 a i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36298653 1 + 80974532 A i canFam3.chr7 C 0 C 0 e mm10.chr1 178720629 32 + 195471971 I e calJac3.chr19 14131382 0 - 49578535 C a score=540297.000000 s hg38.chr1_KI270759v1_alt 121656 230 + 425601 atcccagcacttcgggaggccgaggcaggcaggatcacctgaggtcgggagtttgcgaccagcttgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccaggcatggtggtgcacgcctgtaatcccgtctacttgggaggctgaggcaggagaatcacttgaacccgggaggtggaggttgcggtgagccaagatcacgccattgcactccagcct s panTro4.chr1 224872607 229 + 228333871 atcccagcagttcgggaggccgaggcaggcaggatcacctgaggtcgggagtttgcgaccagcttgaccaac-tggagaaaccccgtctctactaaaaatacaaaattacccaggcatggtggtgcatgcctgtaatcccgtctacttgggaggctgagacaggagaatcacttgaacccgggaggtggaggttgcggtgagccaagatcacgccattgcactccagcct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226229209 230 - 229942017 atcccagcacttcgggaggctgagtcaggcaggatcacctgaggtcgggagtttgcgaccagcttgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccaggcgtggtggcccacgcctgtaatcccatctacttgggaggctgaggcaggagaatcacttgaacccgggagttggaggttgcggtgagccgagatcacgccattgcgctccagcct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140122031 230 - 143122389 atcccagcacttcaggaggccgaggcaggcaggatcacctgaggtcgggagtttgagaccagcttgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggtgcacgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccgggaggtggaggttgcggtgagccgagatcacaccagtgcactccagcct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16837905 230 - 229590362 atcccagcacttcaggaggccgaggcaggcaggatcacctgaggtcgggagtttgagaccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaatcagctgggcgtggtggcacgcgcctgtaatcccagctacttgggaggctgaggcaggagaattgcatgaacccgggaggcagaggtcacggtgagccgtgatcacgccactgcactccagcct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223598659 230 - 227556264 atcccagcacttcaggaggctgaggcaggcaggatcacctgaggtcgggagtttgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaatcagctgggcgtggtggcacgcgcctgtaatcccagctacttgggaggctgaggcaggagaattgcatgaacccgggaggcagaggtcacggtgagccgtgatcacgccactgcactccagcct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649681 230 - 220367699 attccagcacttcaggaggccgaggcaggcaggatcacctgaggtcgggagtttgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggtgtggtggcgcgcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcatgaacccgggaggcagaggtcacggtgagccgtgatcacgcctctgcactccagcct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82449440 229 + 85787240 atcccagcactttaggaggccgaggcgggca-gatcacctgaggtcgggagtttgagaccagcctgaccaacatagagaaaccccatctctactaaaaatacaaaattagccgggcgtggtggcacatgcctgtaatcccagctacttgggaggctgaggcaggagaatcacatgaacccgggaggcagaggtcacagtgagccgtgattatgccactgcactccagcct i chlSab2.chr25 C 0 C 0 e mm10.chr1 178720629 32 + 195471971 I e canFam3.chr7 36298654 0 + 80974532 C e calJac3.chr19 14131382 0 - 49578535 C a score=28976.000000 s hg38.chr1_KI270759v1_alt 121886 23 + 425601 ggacagcaagggtgagactc-tgt s panTro4.chr1 224872836 23 + 228333871 ggacaacaagggtgaaactc-tgt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226229439 24 - 229942017 ggacaacaagggtgcaactcTTAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140122261 23 - 143122389 ggacaacaagagcgaaactc-cat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16838135 21 - 229590362 gggcaacaagagcgaaa--c-tgt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223598889 21 - 227556264 gggcaacaagagcgaaa--c-tgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649911 21 - 220367699 gggcaacaagagcgaaa--c-tgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82449669 23 + 85787240 gggcaacaagagcaaaactc-tgt i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36298654 13 + 80974532 GAAAAGTGAGGGT----------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178720629 32 + 195471971 I e calJac3.chr19 14131382 0 - 49578535 C a score=33444.000000 s hg38.chr1_KI270759v1_alt 121909 21 + 425601 ctcaaaacaaacaaaca---aaca s panTro4.chr1 224872859 21 + 228333871 ctcaaaacaaacaaaca---aaca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226229463 21 - 229942017 CTCAaaacaaacaaaca---aaca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140122284 13 - 143122389 ctc--------caaaca---aaca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16838156 20 - 229590362 ctcaaaa----caaacaaacaaca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223598910 17 - 227556264 ctcaaaa----caaaca---aaca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649932 17 - 220367699 ctcaaaa----caaaca---aaca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82449692 17 + 85787240 ctcaaaa----caaaca---aaca i chlSab2.chr25 C 0 C 0 s mm10.chr1 178720661 17 + 195471971 CTAAAAC----CATACA---AGCA i mm10.chr1 I 32 I 7 e canFam3.chr7 36298667 0 + 80974532 C e calJac3.chr19 14131382 0 - 49578535 C a score=1093699.000000 s hg38.chr1_KI270759v1_alt 121930 332 + 425601 aagaaaaaGCCCTTTTAGGAGCTCATATTGTAGAACTTCACTG-TATT---ATTTT---------TT-TT--TCCTGTTTCTTGTTTTGTTTTCACTGAAGCATATTTTGCTTACCCTTAGTTCCTTGCACTTGCCAGGGTCCCGTTCTGACTTGGTGTCTGTTCTTTTCTCCT-----------TGCCCCAGTGTATCCCCTCGTTCTCACATTCCAGATCTCAGTCTGCCTATTCCAGGACTTCCCATGGAAGCAGGGCTACCATTGAGCTTCCTGTGGGACACTTGTGGTcggggccaacatgcataattgtgccatctattcacagaaccagggcgcccaattgtaggagtgagt s panTro4.chr1 224872880 331 + 228333871 aacaaaAAGCCCTTTTAGGAGCTCATATTGTAGAACTTCACTG-TATT---ATTTT---------TT-TT---CCTGTTTCTTGTTTTGTTTTCACTGAAGCATATTTTGCTTACCCTTAGTTCCTTGCACTTGCCAGGGTCCCGTTCTGACTTGGTGTCTGTTCTTTTCTCCT-----------TGCCCCAGTGTATCCCCTCGTTCTCACATTCCAGATCTCAGTCTGCCTATTCCAGGACTTCCCATGGAAGCAGGGCTACCATTGAGCTTCCTGTGGGACACTTGTGGTcagggccaacatgcataattgtgccatctattcacagaaccagggcgcccaattgtaggagtgagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226229484 332 - 229942017 aacaaaAAACCCTTTTAGGAGCTCATATTGTAGAACTTCACTG-TATT---ATTAT---------TT-TT--TCCTGTTTCTTGTTTTGTTTTCACTGAAGTGTATTTTGCTTACCCTTAGCTCCTTGCACTTGCCAGGGTCCCATTCTGACTTGGTGTCTGTTCTTTTCTCCT-----------TCCCCCAGTGTATCCCCTCGTTCTCACATTCCAGATCTCAGTCTGCCTATTCCAGGACTTCCCATGGAAGCAGGGCTACCATTGAGCTTCCTGTGGGACACTTGTGGTcagggccaacaagcataattgtgccatctattcacagaaccagggcacccaattgtaggagtgagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140122297 334 - 143122389 aacaaaaaaCCCTTTTAGGAGCTGATATTGTAGCACTTCACTG-TACT---ATTTT---------TT-TTTTTCCTGTTTCTTGTTTTGTTTTCACTGAAGCATATTTTGCTCACCCTTAGCTCCTTGCACTTGCCAGGGTCCCATGCTGACTTGGTGTCTGTTCTTTTCTCCT-----------TCCCCCAGTGTATCCCCTCATTCTCACATTCCAGCTCTCGGTCTGCCTATCCCAGGACTTCCCATGGAAGCAGGGCTACCATTGAGCTTCCTGTGGGACACTTGTGGTcagggccaacatgcataattgtgccatctattcacagaaacagggcgcccaaatgtaggagtgaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16838176 335 - 229590362 aacaaaaaaCCCTTTTAGGAGCTCATATTGTACAACTTCACTG-TATTATGATTAT---------TT-TT--TTCTGTTTCTTGTTTTGTTTTCACTGAAGCATATTTTGCTTACCCTTAGCTCCTTTTACTTGCCACGGTCCCATTCTGACTTGGTGTCTGTTCTTTTCTCCC-----------TCCCCCAGTGGATCCCCTCGTTCTCACATTCCAGCTCTCGGTCTGCCTGTTCCAGGACTTCCCATGGAAGCAGGGCCACCATTGAGCTTCCTGTGGGACACTTGTGGTcagggccaacatgcataattgtgccatctattcacagaaccagggcgcccaattgtaggcgtgagt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223598927 335 - 227556264 aacaaaaaaCCCTTTTAGGAGCTCATATTGTACAACTTCACTG-TATTATGATTAT---------TT-TT--TTCTGTTTCTTGTTTTGTTTTCACTGAAGCATATTTTGCTTACCCTTAGCTCCTTTTACTTGCCACGGTCCCATTCTGACTTGGTGTCTGTTCTTTTCTCCC-----------TCCCCCAGTGGATCCCCTCGTTCTCACATTCCAGCTCTCGGTCTGCCTATTCCAGGACTTCCCATGGAAGCAGGGCCACCATTGAGCTTCCTGTGGGACACTTGTGGTcagggccaacatgcgtaattgtgccatctattcacagaaccagggcgcccaattgtaggcgtgagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16649949 335 - 220367699 aacaaaaaacccttttaGGAGCTCATCTTGTACAACTTCActg-tattatgattat---------tt-tt--ttctgtttcttgttttgttttcactgaaGCATATTTTGCTTACCCTTAGCTCCTTGTACTTGCCACAGTCCTATTCTGACTTGGTGTctgttcttttctccc-----------tcccccagtggATCCCCTCGTTCTCACATTCCAGCTCTCGGTCTGCCTATTCCAGGACTTCCCATGGAAGCAGGGCCACCATTGAGTTTCCTGTGGGACACTTGTGGTCAGGGCCAACATGCATAATTGTGCCGTCTATTCACAGAACCAGGGCGCCCAGTTGTAGGCGTGAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82449709 335 + 85787240 aacaaaaaaCCCTTTTAGGAGCTCATATTATAGAACTTCACTG-TATTATGATTAT---------TT-TT--TTCTGTTTCTTGTTTTGTTTTCACTGAAGCATATTTTGCTTACCCTTAGCTCCTTGTACTTGCCACGGTCCCATTCTGACTTGGTGTCTGTTCTTTTCTCCC-----------TTCCCCAGTGGATCCCCTCGTTCTCACATTCCAGCTCTCAGTCTACCTATTCCAGGACTTCCCATGGAAGCAGGGCCACCATTGAGCTTCCTGTGGGACACTTGTGGTcagggccaacatgcataattgtgccatctattcacagaaccagggcacccaattgtaggcgtgagt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14131382 325 - 49578535 AACAAAAAGCCCTTTTAGGAGCTTAGACTGTAGAACCTCACCG-TAGT---GTTGT---------TCGTT--TTCTGTTTCCTGTTTTGTTTCCACTGTAG--TGTTTTGCCTACCCTTCGCTCCTTGCACTTTGCA-GGTCCCATTCTCATTTGGTGTCTG---TCTTCTCCT-----------TTACCTAATGTATCCCCTGGTCCC--CATTCCAGCTCCCTGTCCTCCCGTTCCAGGACTTCCCATGGAAGCAGGGCCACCCTTGAGCTTCCTAGGGGACACTTGTGGTCAGGGCTGGCATGCATGATTGTGCCGTCTGTTCACAGAACCAGGGCGCCCCATTGTAGGAGGGAGT i calJac3.chr19 C 0 I 399 s mm10.chr1 178720685 298 + 195471971 TGTAAGAA---CCTTTATGAGCTCATATTGTAGAAATTTTCTGTTGTTAAAATTTTCTGTTATTGTT-TT--CCCAGTTCCTTG--TGGTTTCCATAGCAGCATG--ATACCTACCTT--GCCTGCTGACTCTGGCA-GCTCTCCTTCCTATGCACTGTCCCTGCCACTCTTC-------------------------CATCTCGTTCAC---TTCC--CTCTACTCCTGACTATTCTGCAGCTTCCCATGGAAGCAGGGCCACTTAGGAGCTCCCTGTGAGACACTGGGG---AAAGCCAATGTGCACAGTTGTG--------TCACGGAA-CAGGGCACCCAATTGT------GAAT i mm10.chr1 I 7 C 0 s canFam3.chr7 36298667 317 + 80974532 ------------TTCTAAGAGCTCATCTCATGGAACTT------TGTTATCATTAT--------GCT-TT--TCCTGTTTCCTG-----TTTCCATTGAAGCCTGTTGTACCTGCACTTAACCTT-----CTCACCAGAATCTCATTCTGACCTAGTGTCTATTCCTTTTGCCTTTCCAAACAACTCCCCCCCTTGAACTCCTCCCTTGCCCTCTCCAGCTCCCTGCTGACTTATTCCATGGC-CCCCAGAGATGCAGGGCTTCCATTG-GCTTCCTATGGCACGTTTGTGGTcagggtcagcatgcaaaattgtgctgtttgcccatgggacaagagca-acaattggaggggcaaat i canFam3.chr7 C 0 C 0 a score=35406.000000 s hg38.chr1_KI270759v1_alt 122262 9 + 425601 -ggggcttaa s panTro4.chr1 224873211 9 + 228333871 -ggggcttaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226229816 9 - 229942017 -ggggcttaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140122631 9 - 143122389 -ggggcttaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16838511 9 - 229590362 -ggggcttaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223599262 9 - 227556264 -ggggcttaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16650284 9 - 220367699 -GGGGCTTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82450044 9 + 85787240 -ggggcttaa i chlSab2.chr25 C 0 C 0 s mm10.chr1 178720983 9 + 195471971 -GGGCTTTAA i mm10.chr1 C 0 C 0 s canFam3.chr7 36298984 10 + 80974532 gggggcttaa i canFam3.chr7 C 0 C 0 e calJac3.chr19 14131707 399 - 49578535 I a score=1711355.000000 s hg38.chr1_KI270759v1_alt 122271 521 + 425601 atccagccAA--CACTGTGCCAGCCTGGTGGAACC-------ACCTCCTCTGGGGCTCTGTCAATC------------------CTCCTTGGATGCAGGTAATGTCTGGGCTCATGTTGTCCTGGCCGGCCCTGCCTCCTTCACTGGTGGCCAAGCAGTGTCAGGACATAGATCTTTGAAGGGCTGAACTGGAAGGCAAACCCCTACCCTCTGGTTT---------------------------------CTTATTTATTTATTTATTCCTGACAGGTCGTAGCTTTACTCTGCTTAGAAAATACTCCGTTGATTTCTTGG-AAAAGAAGGGACTCTCACTCATGTATATTGATGAAGTGAATTTTTAGG-AATCATAGTTCTATGAATATGGTCTCACTTTAACTCACCTTA---------TGAAAGGAAAACATTAAGAAGCAACCAAGGGTATATTTAGTGCCATCCGATTTCAAGGGCCCTAGAAAACAGTCTCAGGCAT---TTGCTGTGTGAAGCTGAACCT-------CCTCAGTTG-CTTAT--GAGACAGCGAA---AGCACAGAAGGAAAAGTGGTTGTAATTTAACGTCTACACTGT s panTro4.chr1 224873220 521 + 228333871 atccagccAA--CACTGTGCCAGCCTGGTGGAACC-------ACCTCCTCTGGGGCTCTGTCAATC------------------CTCCTTGGATGCAGGTAATGTCTGGGCTCATGTTGTCCTGGCCAGCCCTGCCTCCTTCACTGGTGGCCAAGCAGTGTCAGGACATAGATCTTTGAAGGGCTGAACTGGAAGGCAAACCCCTACCCTCTGGTTT---------------------------------CTTATTTATTTATTTATTCCTGACAGGTCGTAGCTTTACTCTGCTTAGAAAATACTCCGTTGATTTCTTGG-AAAAGAAGGGACTCTCGCTCATGTATATTGATGAAGTGAATTTTTAGG-AATCATAGTTCTATGAATATGGTCTCACTTTAACTCACCTCA---------TGAAAGGAAAACATTAAGAAGCAACCAAGGGTATATTTAGTGCCATCCGATTTCAAGGGCCCTAGAAAACAGTCTCAGGCAT---TTGCTGTGTGAAGCCGAACCT-------CCTCAGTTG-CTTAC--GAGACAGCGAA---AGCACAGAAGGAAAAGTGGTTGTAATTTAACGTCTACACTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226229825 524 - 229942017 atctagccaa--cactgtgccagccTGGTGGAACC-------ACCTCCTCTGGGGCTCTGTGAATC------------------CTCCTTGGACGCAGGTAATGTCTGGGCTCATGTTGTCCTGGCCGGCCCTGCCTCCTTTACTGGTGGCCAAGCAGTGTCAGGGCATAGATCTTTGAAGGGCTGAACTGGAAGGCAAACCCCTACCCTCTGGTTT---------------------------------CTTATTTATTTATTTATTCCTGACAGGTCATAGCTTTACTCTCCTCAGAAAATACTCTGTTGATTTCTTGG-AAAAGAAGGGACTCTCTCTCATGTATATTGATGAAGTGAATTTTTAAG-AATCATAGTTCTATGAATATGGTTTCACTTTAACTCACCTCA---------CGAAAGGAAAACACTAAGAAGCAACCAAGGGTATATTTAGTGCTATCCGATTTCAAGGGCCCTAGAAAACAGTCTCAGGTGT---TTGCTGTGTGAAGCCAAACCT-------CCTTAGTTG-CTTAT--GAGACAGTGAATCTTTCACAGAAGGAAAAGTGGTCGTAATTTAACATCTACACTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140122640 529 - 143122389 atccagccaa--cgctgtgccagcctggtggagcc-------acctcctctggggctctgtctatc------------------cTCCTTGGTCGCAGGTAATGTCTGAGCTCATGTTGTCCTGGCCGGCCCTGCCTCCTTCACTGGTGGCCAAGCAGTGTCAGAGCACAGATCTTTGAAGGGCTGAACTGGAAGGCAAATCCCTACCCTCTGGGTTTC--------tta-----------------ttatttatttatttatttattCCTGACAGGTCATAGCTTTACTCTGCTTAGAAAATACTCCATTGATTTCTTGG-AAGAGAAGGGACTCTCACGCACATATATTGATGAAGTGAATTTTTAGG-AATCATAGTTCTATGAATGTGGTTTCACTTTACCTCACCTCA---------TGAAAGAAAAACATTAAGAAGCAACCAAGAGGATATTTAGTGCCATCCGATTTCAAGGGCTCTAGAAAACAGTCTCAGGCAT---TTGCTGTGTGCAGCTGAACCT-------CCTTAGTTG-CTTAT--GAGACAGCGAA---AACACAGAAGGAAAAGTGGTCGTAATTTAACATCTACACTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16838520 540 - 229590362 atccgtccaa--cactgtaccagcctggcagagcc-------acctcctctggggctCT-TCTCTC------------------CTCCTTGGACGCAGGTAATGCCTGGGCTCATGTTGTCCTG---------GCCTCCTTCACTGGTGGCCAAGCAGTGCCACGGCTTAGATCTTTGAAGGGCTGAACTGGAAGGCAAACCCCTGCCCTCTGGGATTC----ttatttatttatttatttatttacttatttatgtagtcatttattCCTGACGGGTCGTAGCTTTACTCTGCTTAGAAAATACTCCATTGATTTCTTGG-AAAAGAAGGGACTCTCACTCATGTATAATGGTGAAGTGAATTTTTAGG-AGTCATAGTTCTATGAATATGGTTTCACTTTAACTCACCTCA---------TGAAAGGAAAACATTAAGAAGCAACTAAGGGTGTATTTAGTACCATCTGATTTCAGGGGCCCTAGAAAACAGTCTCAGGCAT---TTACTGTGTGAAGCCGAACCT-------CCTTAGTTG-CTTAT--GAGACAGCGAA---AGCACGGAAGGAAAAGTGGCCGTAATTTAACATCGACACTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223599271 536 - 227556264 atccGTCCAA--CACTGTACCAGCCTGGCAGAGCC-------ACCTCCTCTGGGGCTCT-TCTCTC------------------CTCCTTGGACGCAGGTAATGCCTGGGCTCATGTCATCCTG---------GCCTCCTTCACTGGTGGCCAAGCAGTGCCACGGCTTAGATCTTTGAAGGGCTGAACTGGAAGGCAAACCCCTGCCCTCTGGGATTC--------ttatttatttatttatttacttatttatgtattcatttattCCTGACGGGTCGTAGCTTTACTCTGCTTAGAAAATACTCCATTGATTTCTTGG-AAAAGAAGGGACTCTCACTCATGTATAATGGTGAAGTGAATTTTTAGG-AGTCATAGTTCTATGAATATGGTTTCACTTTAACTCACCTCA---------TGAAAGGAAAACATTAAGAAGCAACTAAGGGTGTATTTAGTACCATCTGATTTCAGGGGCCCTAGAAAACCGTCTCAGGCAT---TTACTGTGTGAAGCCGAACCT-------CCTTAGTTG-CTTAT--GAGACAGCGAA---AGCACGGAAGGAAAAGTGGCCGTAATTTAACATCGACACTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16650293 535 - 220367699 ATCCGTCCAA--CGCTGTACCAGCCTGGCGGAGCC-------ACCTCCTCTGGGGCTCT-TCTCTC------------------CTCCTTGGACGCAGGTAATGCCTGGGCTCATGTTGTCCTG---------GCCTCCTTCACTGGTGGCCAAGCAGTGCCAGGGCTTAGATCTTTGAAGGGCTGAACTGGAAGGCAAACCCCTGCCCTCTgggattc--------ttatttatttatttatttacttatttatgtattcatttattcctgACAGGTCGTAGCTTTACTCTGCTTAGAAAATACTCCATTGATTTCTTGG-AAAAGAAGGGACTCTCACTCATGTATAATGGTGAAGTGAATTTTTAGG-AGTCATAGTTCTATGAATATGGTTTCACTGTAACTCACCTca---------tgaaaggaaaacattaagAAGCAACTAA-GGTGTATTTAGTACCATCTGATTTCAGGGGCCCTAGAAAACCGTCTCAGGCAT---TTACTGTGTGAAGCCGAACCT-------CCTTAGTTG-CTTAT--GAGACAGCGAA---AGCACACAAGGAAAAGTGGCCGTAATTTAACATCGACACTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82450053 544 + 85787240 atccTTCCAA--CACTGTACCAGCCTGGCAGAGCC-------ACCTCCTCTGGGGCTCT-TCTCTC------------------CTCCTTGGACGCAGGTAATGCCTGGGCTCATGTTGTCCTG---------GCCTCCTTCACTGGTGGCCAAGCAGTGCCAGGGCTTAGATCTTTGAAGGGCTGAACTGGAAGGCAAACCCCTGCCCTCTGGGATTCttatttatttatttatttatttatttatttatttatgtattcatttattCCTGACAGGTCGTAGCTTTACTCTGCTTAGAAAATACTCCATTGATTTCTTGG-AAAAGAAGGGACTCTCACTCATGTATAATGATGAAGTGAATTTTTAGG-AATCATAGTTCTATGAATATGGTTTCACTTTAACTCACCTCA---------TGAAAGGAAAACATTAAGAAGCAACTAAGGGTGTATTTAGTACCATCTGATTTCAGGGGCCCTAGAAAACCGTCTCAGGCAT---TTACTGTGTGAAGCCGAACCT-------CCTTAGTTG-CTTAC--GAGACAGCGAA---AGCACGGAAGGAAAAGTGGCCATAATTTAACATCGACACTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14132106 519 - 49578535 ATCCAGCCCA--CACTGTGCCAGCCCGGCGGAGCC-------ACCTCCTGTGGGGCTCTGTCTGTC------------------CTCCTTGGACGCAGGTAGTATGTGGGCTTATGTTGCCCTGGCTGGCCCTGCCTTCTTCACTACTGGCCAAGCAGTGTCAGGCCGTAGATCTTTGAAGGGCTGAACCGGAAGAGAAA-CCCTCCCCTCCATGTTTC------------------------------------TTATTTATTTATCCCTGGTAGTTTGTAGCCTTACTCTGCTTAGAAAAGACTTCATTGATTGCTTGG-GAAAGAAGGGAGTCTCACTCATGTATACAGATAAAGTGGATCTTCAGG-AATCATAGTTATGTGAATATGGTTTCACTCTAACTCCTCACA---------TGAAAGGGAAACATTAAGAAGCAGCCAAGTGTGTGTTTAGTGCCATCCGATGTCAAGGGCCCCAGAAAACAGTCTCAGGCAT---TTGCTGTGTGAGGCCAAACCT-------CCTGAATTG-CTTGTGAGAGACAGCGAA---AGCACTGAAGGAGAAGCAGCCACAATCTAACATCGGTGCTGT i calJac3.chr19 I 399 C 0 s mm10.chr1 178720992 526 + 195471971 ---GGGCTAAAGCACTGTAGGCTCATGGGGAGACTCTGGCAAGCCTCCAGTAGGGGCATCTTTTTC------------------CTAACTACCTGCAAGTGTGGCCTGGGCTCCAGATGCTCCAATCATCCA-GTCCCCTTCTTTGGCAGCTAATCAGAGCCAGG-CAAGGATC-------------ACTGAAGGCCAAACCATCACCCCATGGATCTC------------------------------------TGGCTTATGTATTCCTGGCAGG-CTTAGGTTTACTCTCCTTAGAAAAGGTTCTGAGCACTTATTGG-AAAAGAAAGAAGTGTTGCTCATGAATATGGATGAGGTGAACTTCTAGG-AGTCCTGGTTGTATGAATATAGTTCCACTTAAACTCACCTCAGTGGCAGTGTGAAAGGAAGACTTTAGGAAGGAGCCAAGTGAGTTTCTAGTGCCCTTGGATTTCTGAGGCCCCAGGAAACAGTATCAGGTGTAGCTTGCACTAAGAAATCTTCCCCCCCCCTGCCCTGATTGCCCTGA--GAGATGGCAAA---AGCATTGCA-AACAAGTAGCTGC-ATTTAGTGTCTCCACTGT i mm10.chr1 C 0 I 2564 s canFam3.chr7 36298994 529 + 80974532 atgcagccag--ctgtctgctggtagggctgaggt-------gcctccctctgggctccttctatccaagaggacctctgttagccagttgtacagaggcacagtgtgggcttgc-CTGCACCAGCTGCTCCTGCC-CCTACCCTGGTGGCTCAGCAGCACTGGGGCAGCAGT-TCTGATGACCTGAACTGGAAGCCAAATCCCCACCCTCTGGGTTTC------------------------------------TTGTTTATTTATTCCTGGCAGGTC--AACCTTACTTTTCTTAGAAAAGACTCCGTGGACTTCTCGGAAAAAGAGGGGACTCTTGCTCATGTATATGGATGAAGTGAATTTGTAGGAAATCATACCTGTGCGAATAGAGTTTCGCTTGAGCACACATCAGCTGCCGTTTAAAAGGAAAACATTAAGAAGGAGCCAAATGCATACTGAGTGCCCTCATATTTCAGGGGCACAGGGAAAGAGCTTCAGGTGT---TTGCTGCATGAAAAAGTCAAT-------CCTTGATGG-CTTGA--GAGACAGCGGA---AGCGCTGAGGGCAAAG-------------GTGTCTACATTAT i canFam3.chr7 C 0 C 0 a score=1551106.000000 s hg38.chr1_KI270759v1_alt 122792 476 + 425601 TTTCCCTTCTGCT----AAAAACATGCCTAAAACACCTCAAATAGATAACCCTAACATCCAATATGCAACCCCAGCAACCCCC--AACTGTTCTGTTGTTGGGGGTGCAGTCCGTAACAGAAGTGGCATTCATAGCTTGGCACACACCACTCTGAGATGGTGAGCTACGCTAAAGAAAATGACCAGCGTTTGCGGCCCCTTCCCATCTTCTGCTGCAGGGAATGTGGTCAGGTGGAGCATTTTCTGATT-AAACAAGTCCTTTGTCTGACTGGCGGCCGGTTGGGGTGTTGGCAATTGGCTCCCAACATCTGGGAATCATTTCCACGGCTTTGCCTAGGTTGAAAACTCAGTTCATGTCTTGATGTGAATGTCTGAAGGCAAAGCAATTTCAACAAGCCTCAAGAATCCCAGGGATTCTTGTAAGATACTCTCAGGGTTAAGGATTCTAGTTCTTATTGCACATTTTGCATTTTTTGTTTTAA s panTro4.chr1 224873741 476 + 228333871 TTTCCCTTGTGCT----AAAAACATGCCTAAAACACCTCAAATAGATAACCCTAACATCCAATATGCAACCCCAGCAACCCCC--AACTGTTCTTTTGTGGGGGGTGCAGTCCGTAACAGAACTGGCATTCATAGCTTGGCACACACCACTCTGAGATGGTGAGCTACGCTGAAGAAAACGACCAGTGTTTGCGGCCCCTTCCCATCTTCTGCTGCAGGGAATGTGGTCAGAAGGAGCATTTTCTGATT-AAACAAGTCCTTTGTCTGACTGGCGGCCGGTTGGGGTGTTGGCAATTGGCTCCCAACATCTGGGAATCATTTCCACAGCTTTGCCTAGGTTGAAAACTCAGTTCATGTCTTGATGTGAACGTCTGAAGGCAAAGCAATTTCAACAAGCCTCAAGAATCCCAGGGATTCTTGTAAGATACTCTCAGGGCTAAGGATTCTAGTTCTTATTGCACATTTTGCATTTTTTGTTTTAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226230349 476 - 229942017 TTTCCCTTGTGCT----AAAAACATGCCTAAAACACCTCAAATACATAACCCTAACATCCAATATGCAACCCCAGCAACCCCC--GACTGTTCTGTTGTGGGGGGTACAGACCGTAACAGAAGTGGCATTCATGGCTTGGCATATACCACTCCGAGTTGGTGAGCTACGCTAAAGAAAACAACCAGTGTTTGCGGCCCCTTCCCATCTTCTGCTGCAGGGAATGTGGTCAAATGGAGCATTTTCTGATT-AAACAAGTCCTTTGTCTGACTGGCAGCCGGTTGGGGTGTTGGCAATTGGCTCCCAACATCTGGGAATAATTTCCACGGCTTTGCCTAGGTTGAAAACTCAATTCATGTCTTGGTGTGAATGTCTGAAGGCAAAGCAATTTCAACAAGCCTCAAGAATCCCAGGGATTCTTGTAAGATATTCTCAAGGTTAAGGATTCTAGTTCTTATTGCACATTTTGCATTTTTTGTTTTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140123169 475 - 143122389 TTTCCCTTGTGCT----AAAAACAAGCTTAAAACACCTCAAATAGATAAGCCTAA-ATCCGATATGCAACCCCAGCAAGCCCC--AACTGTTCTGTTGTGGGGGGTACAGACTGTAACAGAAGTGGCATTCATGGCTTGGCATACACCACTCCGAGCTGGTGAGCTACGCTAAAGAAAACGACCAGTGTTTGCGGCCCCTTCCCATCTTCTGCTGCAGGGAGTGTGGTCAAATGGAGCATTTTCTGATT-AAACAAGTCCTTTGTCTGACTGGCGGCCGGTTGGGGTGTTGGCAATTGGCTCCCACCATCTGGGAATCATTTCCACAGCTTTGCCTAGGTTGAAAAGTCAGTTCATGTCTTGGTGTGAATATCTGAAGGTAAAGCAATTTCAACAAGCCTCAAGAATCCCAGGGGTTCTTGTAAGATACTCTCAGGGTTAAGGATTCTAGTTCTTATCGCACATTTTGCAATTTTTGTTTTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16839060 469 - 229590362 TTACCCTTGTGCT----AAAAACATGCCTAAAACACCTCAAATAGATAACCCTAACATC-------CAACCCCAGCAACCCCC--GACTGTTCTATTGTGGGGGGTACGGACCGTAACAGAAGTGGCATTCATGGCTTGGCGTACACCACTCCGAGTTGGTGAGCTATGCTAAAGAAAACGGCCAGTGTTTGCGGCCCCTTCCCATCTTCTGCTGCAGGGAATGTGGTCAAATGGGGCATTTTCTGATT-AAACAAGTCCTTTGTCTGACTGGTGGCTGGTTGGGGTGTTGGCAATTGGCTCCCAACATCTGGGAATCATTTCCACAGCTTTGCCTAGGTTGAAAACTCAATTCATGTCTTGGTGTGAATGTCTGAAGGGAAAGCAATTTCAACAAGCCTCAAGAATCCCAGGGATTCTTGTAAGATACTCTCAGGTTTAAGGATTCTAGTTCTTACTGCACATTTTGCTTTTTTTTTTTTAA i rheMac3.chr1 C 0 M 657 s macFas5.chr1 223599807 469 - 227556264 TTACCCTTGTGCT----AAAAACATGCCTAAAACACCTCAAATAGATAACCCTAACATC-------CAACCCCAGCAACCCCC--GACTGTTCTATTGTGGGGGGTACGGACCGTAACAGAAGTGGCATTCATGGCTTGGCGTACACCACTCCGAGTTGGTGAGCTACGCTAAAGAAAACGGCCAGTGTTTGCGGCCCCTTCCCATCTTCTGCTGCAGGGAATGTGGTCAAATGGGGCATTTTCTGATT-AAACAAGTCCTTTGTCTGACTGGTGGCTGGTTGGGGTGTTGGCAATTGGCTCCCAACATCTGGGAATCATTTCCACAGCTTTGCCTAGGTTGAAAACTCAATTCATGTCTTGGTGTGAATGTCTGAAGGGAAAGCAATTTCAACAAGCCTCAAGAATCCCAGGGATTCTTGTAAGATACTCTCAGGTTTAAGGATTCTAGTTCTTACTGCACATTTTGCTTTTTTTTTTTTTA i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16650828 468 - 220367699 TTACCCTTGTGCT----AAAAACATGCCTAAAACACCTCAAATAGATAACCCTAACATC-------CAACCCCAGCAACCCCC--GACTGTTCTATTGT-GGGGGTACGGACCGTAACAGAAGTGGCATTCATGGCTTGGCGTACACCACTCCGAGTTGGTGAGCTACGCTAAAGAAAACGACCAGTGTTTGCGGCCCCTTCCCATCTTCTGCTGCTGGGAATGTGGTCAAATGGGGCATTTTCTGATT-AAACAAGTCCTTTGTCTGACTGGTGGCTGGTTGGGGTGTTGGCAGTTGGCTCCCAACATCTGGGAATCATTTCCACAGCTTTGCCTAGCTTGAAAACTCAATTCATGTCTTGGTGTGAATGTCTGAAGGGAAAGCAATTTCAACAAGCCTCAAAAATCCCAGGGACTCTTGTAAGATACTCTCAGGTTTAAGGATTCTAGTTCTTACTgcccattttgctttttttttttttt i papAnu2.chr1 C 0 I 3 s chlSab2.chr25 82450597 469 + 85787240 TTACCCTTGTGCT----AAAAACATGCCTAAAACACCTCAAATAGATAACCCTAACATC-------CAACCCCAGCAACCCCT--GACTGTTCTATTATGGGGGGTACAGACCGTAACAGAAGTGGCATTCATGGCTTGGCATACACCACTCCGAGTTGGTGAGCTACGCTAAAGAAAACGGCCAGTGTTTGCGGCCCCTTCCCATCTTCTGCTGCTGGGAATGTGGTCAAATGGGGCATTTTCTGATT-AAACAAGTCCTTTGTCTGACTGGTGGCTGGTTGGGGTGTTGGCAATTGGCTCCCAACATCTGGGAATCATTTCCACAGCTTTGCCTAGGTTGAAAACTCAATTCATGTCTTGGTGTGAATGTCTGAAGGGAAAGCAATTTCAACATGCCTCAAGAATCCCAGGGATTCTTGTAAGATACTCTCAGGTTTAAGGATTCTAGTTCTTACTGCCCATTTTGCTTTTTTTTTTTTTT i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14132625 478 - 49578535 CTTCCCGTGTGTT----AAAGACGTGCCTAGCGCACCTCAGATAGATAACCCTAACATCCAGAATGCAACCCCTGCGGCCCCCTGAACTGCCCTATTTTGTGGTGTACAGATTGTAACAGAAGCGACATTCATGGCTTAGCATATGCCACTCTGAGTCGGCGAGCTGCGCTAGAGAAAACAACCAGTGTGTGCGGTCCCTTCCCATCTTCTGCTGCAGGGAATGTGGTCACATGGGGCATTTTCTGCTT-AAACAAGTCCTTTGTCTGACTGGCAGCTGGTTGGGGTATTGGCGATCTGCTGCCAACATCTGGGAATCATTTCCACAGCTCTGCCTGGGTTGGAAGCTCAATTCACGTCTTGGTGTGAATGTCTGAAGGCAAAGCAATTTCAGCAAGCCTCAGGAATCCCAGGGACCCTTGTAAGATGCTGTCAGGGTTAAGCATTCTCGTTCTTACTGCACATTTTGCATTTTTTTTTTTTT i calJac3.chr19 C 0 I 2 s canFam3.chr7 36299523 410 + 80974532 TATCCTTTGTGTTCAAAGAAAAAAGTCCTAAAATGCTTGAAATGGGTAATGCTAATGTCCAGCAC-CAACCCCAGCAACCCCCAGAACTATTCTATTTTGGGGTGTGCACACCATAACAAA--TGACCTTCGTGGCTAGGCCCACACCA-----------------------------------------------------------------GCA-GGAATGT-GTAAAATCGGGCAGTTTCTGGTTAAAACAAGTCCTTTGTCTGACTGATGGCCTGTTGGGGTGTTGGCAATCAGCTCACAACATCTGGGAGTCATTTGCACAGCTTTGCTTGAGCTGAAAACCCAGCTCATGCCTTGGTGTGGCTGTTTGAAGGCAAAGTGATTGCCGCAAGCCTGAGGGATCCTAGTGTTTCTTGTCAGGCGTTCTCAGGCTCAGACGTTCCGGTTCTTACTGCACATTTTGAGTTATCATTTT--- i canFam3.chr7 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I a score=60452.000000 s hg38.chr1_KI270759v1_alt 123268 26 + 425601 TTGATGCTGTGGTGGGGGCGGGGGT-G s panTro4.chr1 224874217 27 + 228333871 TTGATGCTGTGGTGGGGGCGGGGGCGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226230825 26 - 229942017 TTGATGCTGTGGTGGGGGTGGGGGT-G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140123644 26 - 143122389 TTGATGCTgtggtgggggcgggggt-g i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223600277 26 - 227556264 TTGGTGCTGTGGTGGGGGCGGGGGT-G i macFas5.chr1 I 1 I 5 s papAnu2.chr1 16651299 26 - 220367699 ttggtgctgtggtgggggcgggggt-g i papAnu2.chr1 I 3 I 6 s chlSab2.chr25 82451067 26 + 85787240 TTGGTGCTGTggtgggggcaggggg-g i chlSab2.chr25 I 1 I 6 s calJac3.chr19 14133105 26 - 49578535 CTGATACTGCAGCAGGGGCAAAGGT-G i calJac3.chr19 I 2 I 11 s canFam3.chr7 36299933 25 + 80974532 TTGAC-CAGTGTTGGGGGCAGGGAA-G i canFam3.chr7 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I e rheMac3.chr1 16839529 657 - 229590362 M a score=3321.000000 s hg38.chr1_KI270759v1_alt 123294 1 + 425601 G s panTro4.chr1 224874244 1 + 228333871 G i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226230851 1 - 229942017 G i ponAbe2.chr1 C 0 I 193 s nomLeu3.chr5 140123670 1 - 143122389 g i nomLeu3.chr5 C 0 I 13 s rheMac3.chr1 16840197 1 - 229590362 G i rheMac3.chr1 M 657 C 0 s macFas5.chr1 223600308 1 - 227556264 G i macFas5.chr1 I 5 C 0 s papAnu2.chr1 16651331 1 - 220367699 g i papAnu2.chr1 I 6 C 0 s chlSab2.chr25 82451099 1 + 85787240 g i chlSab2.chr25 I 6 C 0 s calJac3.chr19 14133142 1 - 49578535 G i calJac3.chr19 I 11 C 0 s canFam3.chr7 36299958 1 + 80974532 A i canFam3.chr7 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I a score=870655.000000 s hg38.chr1_KI270759v1_alt 123295 362 + 425601 GGGGCAGTGGTTAGGAGAGAaggatattgaataagcaaacagaaagctggagaagcccaggcttgaattctcagccagacactgacattct-----------------gacttgaggcaagtaacttaaccttgctaagcttccgttgcttctgttcaatggagatcatcatatctgctttataggattatggagaggattaaatgaaaatgtgatagtccttggtaaacttcatccaaatcctacagataatgtgaagATGGCACGTGCTATAAAAAGGATGGAGTTCTG---TCCTCAATGAATTCTCAACGTTCCCTTTTGAGTAGATGACTTTT--CGTTGAGACCTTTACAGGCTGTTTAG------GTGGCCCTTTGTTA-TCTG s panTro4.chr1 224874245 362 + 228333871 GGGGCAGTGGTTAGGAGAGAAGGATATTGAATAAGCAAACAGAAAGCTGGAgaagcccaggcttgaattctcagccagacgctgacattct-----------------gacttgaggcaagtaacttaaccttgctgagcttccgttgcttctgttcaatggagatcatcacatctgctttataggattatggagaggtttaaatgaaaatgtgatagtccttggtaaacGTCATCTAAATCCTGCAGATAATGTGAAGGTGGCACGTGCTGTAAAAAGGATGGAGTTCTG---TCCTCAATGAATTCTCCGCGTTCCCTTTTGAGTAGATGACTTTT--CGTTGAGACCTTTACAGGCTGTTTAG------GTGGCCCTTTGTTA-TCTG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140123684 362 - 143122389 ggggtagtggttaggggAGAAGGATATTGAATAAGCAAATAGAAAGCTGGAgaagcccaggcttgaattctcagccagacactgacattct-----------------gacttgaggcaagtaacttaaccttgctaagcttcccttgcttctgttaaatggagatcatcatatctgctttataggattatggagaggattaaatgaaaatgtgatagtactgggtaaacttcatctaaatcctacagataatgtgaagATGGCACATGCTATAAAAAGGATGGAGTTCTG---TCCTCAATGAATTCTCAACATTCTCTTTTGAGTAGATGACTTTT--CGTTGAGACCTTTACAGGCTTTTTAG------GTGGCCCTTTGTTA-TCTG i nomLeu3.chr5 I 13 C 0 s rheMac3.chr1 16840198 362 - 229590362 GGGGCagtggttaagagagaaggatattgaataagcaaatagaaagctggagaagcccaggcttgaattctcagccagatactgacattct-----------------gacttgaggcaagtaacttaaccttgctaagcttccgttgcttctgttaaatggagatcatcatgtctgctttataggattatggggaggattaaatgaaaatgtgatagtacttggtaaacttcatctaaatcctacagataatgcgaagATGGCCCTCACTATAAAAAGGATGGCGTTCTG---TCCTCAGTGAATTCTTCACATTCTCTTTTGAGTAGATGACTTTT--CGTTGCCACCTTTACAGGCTGTTTAG------ATGGCCCTTTGTCG-TCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223600309 362 - 227556264 ggggcagtggtgaagagagaaggatattgaataagcaaatagaaagctggagaagcccaggcttgaattctcagccagatactgacattct-----------------gacttgaggcaagtaacttaaccttgctaagcttccgttgcttctgttaaatggagatcatcatgtctgctttataggattatggggaggattaaatgaaaatgtgatagtacttggtaaacttcatctaaatcctacagataatgcgaagATGGCCCTCACTATAAAAAGGATGGCGTTCTG---TCCTCAGTGAATTCTTCACATTCTCTTTTGAGTAGATGACTTTT--CGTTGCCACCTTTACAGGCTGTTTAG------ATGGCCCTTTGTCA-TCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16651332 362 - 220367699 ggggcagtagTTAAGGGAGAAGGATATTGAATAAGCAAATAGATAGCTGGAGAAGCCCAGGCTTGAATTCTCAGCCAGATACTGACATTCT-----------------GACTTGAGGCAAGTAACTTAACCTTGCTAAGCTTCCGTTGCTTCTGTTAAATGGAGATCATCATGTCTGCTTTATAGGATTAtggggaggattaaatgaaaatgtgataGTACTTGGTAAACTTCATCTAAATCCTACAGATAATGCGAAGATGGCACTCACTATAAAAGGGATGGCGTTCTG---TCCTCAGTGAATTCTTCACATTCTCTTTTGAGTAGATGACTTTT--CGTTGCCACCTTTACAGGCTGTTTAG------ATGGCCCTTTGTCG-TCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82451100 358 + 85787240 ggggCCGTAGTTAAGGGAGAAAGATATTGAATAAGCAAATAGAAAGCTGGAgaagcccaggcttgaattctcagccagatactgacattct-----------------gacttgaggcaagtaacttaaccttgctaagcttccgttgcttctgttaaatggagatcatcatatctgctttataggattatggagaggattaaatgaaaatgtgatagtacttggtaaacttcatctaaatcctacagataatgcgaagATGGCACTCACTATAAAAGGGATGGCGTTCTG---TCCTCAGTGAATTCTTCACATTCTCTTTTGAGTAGATGACTTTT--TGTTGCCACCTTTACAGGCTGTTTAG------ATGGCCCTTTGTCA----- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14133143 368 - 49578535 GGGGCAGTGGTTTGGGAAGAAGGATATTAGATAAACAAATAGAAAGCTGGAGaagcccaggcttgaatcctcagcaaaatactgaccttct-----------------gacttgaggcaagtaacttaaccttgctaagcttccgattcttctgttaaatggagatcatcataacttctttacaggattacggagaggattagatgaaaatgtgatagtgcttggcaAACCTCATCTGAATCCCACAGGTGATGTTAAGATGGCACTTGCCGTCAGAGGGATGGAGTTCTG---TCCTCAGCCAAGTCTCAGAGTTCTCTCCTGAGTAGATGACTTTG---GTCGCCATCTTTACAGGCTGTGTAGGTGACTGTGGCCCTTTGTTACCCCA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36299959 344 + 80974532 TGGGTGTTGG------------------AAAGAAAGAAAGAGATGGTGAGGTGAGCCTGGGGTCGGATCCACAGCCTGCTACAGACATTCTGGCCTGGCCTGGATCTGgacttcaggcacgtgacttaacctctgggagcat--gttctttctgttccagggaggtcatcccatctattttgcagggttgGGG--------------AAATGTGGTAGCACTTGGAAAATGTCACCGGAATCCTATGGATGATGT-AAGAGGGCATATGCTG-GGACGGGGTAGAGGTCTGGCTCCCCCTGGGAAGCCCAGGCAGTGC----TCAGTGGATGGCTCTTGTCATGCCCACCTTTATGTTGGGCTCAT------CTGGCACTTTTTCA-CCTG i canFam3.chr7 C 0 I 858 e mm10.chr1 178721518 2564 + 195471971 I e ponAbe2.chr1 226230852 193 - 229942017 I a score=123391.000000 s hg38.chr1_KI270759v1_alt 123657 55 + 425601 TCTAACGACTGTCCAGGCCTTCTGTGGCAATTATAAAGATCTGGTATCATGTCTC s panTro4.chr1 224874607 55 + 228333871 TCTAATGACTGTCCAGGCCTTCTGTGGCAATTATAAAGATCTGGTATCATGTCTC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140124046 55 - 143122389 TCTAATGACTGTCCAGGCCTTCTGTGGCAATTGTAAAGATCTGGTATCACGTCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16840560 55 - 229590362 TCTAATGACTGTCCAGGCCTTCTGTGGCAGTTGTATAGATCTGGTATCACGTCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223600671 55 - 227556264 TCTAATGACTGTCCAGGCCTTCTGTGGCAGTTGTATAGATCTGGTATCACGTCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16651694 55 - 220367699 TCTAATGACTGTCCAGGCCTTCTGTGGCAGTTGTATAGATCTGGTATCACGTCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82451458 55 + 85787240 TCTAACGACTGTCCAGGCCTTCTGTGGCAGTTATATAGATCTGGTATCACATCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14133511 54 - 49578535 CCTAACGACTGTCCAGGCCTTCTTCGGGAATTGTA-ACACCTGGTATCACCTCTC i calJac3.chr19 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I e canFam3.chr7 36300303 858 + 80974532 I e ponAbe2.chr1 226230852 193 - 229942017 I a score=1433542.000000 s hg38.chr1_KI270759v1_alt 123712 508 + 425601 TGAGAACAAAAACCACCTACAGAAGGAGCTGAAGAGCAATTCGCCCTTAAA--TCTcacctgttacgaactagatgccattggtgatggaaaatatcagtgacccatacggagagagaaacctgccctcaagtagctgcattttagcagagCTCCAGGTAGGTCACTGCTCA-CCTCTAAATCTTCTGAAGAGGTTTCAtttttttgttggtttttgttttgttt---------tgagttgcagtctcgctctgtctcccagcccagattgcagtggcacaatctcggctcactgcaatctccacctcctgggttcaagcaattcttccacctcagcctcccaagtagctgggattacaggcacctgccaccacacctggctaatttttgtattttttagtagagatggggttttgccatgttggccaggctggtcttggacacctgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaagcatgagccactgcacccggccTT s panTro4.chr1 224874662 508 + 228333871 TGAGAACAAAAACCACCTACAGAAGGAGCTGAGGAGCAATTCGCCCTTAAA--TCTCACCTGTTATGAACTAGATGCCATTGGTGATGCAAAATATCAGTGACCCATATGGAGAGAGAAACCTGCCCTCAAGTAGCTGCATTTTAGCAGAGCTCCAGGTAGGTCACTGCTCA-CCTCTAAATCTTCTGAAGAGGTTTCAtttttttgttggtttttgttttgttt---------tgagttgcagtctcgctctgtctcccagcccagattgcactggcacaatctcggctcactgcaatctccacctcctgggttcaagcaattcttccacctcagcctcccaaggagctgggattacaggcacctgccaccacacctggctaatttttgtattttttagtagagatggggttttgccatgttggccaggctggtcttggacacctgacctcaggtgatctgcctgccttggcctcccaaagtgctgggattacaagcgtgagccactgcacccggccTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226231045 506 - 229942017 TGAGAACAAAAACCACTTACAGAA-GAGCTGA-GTGCAATTCGCCATCAAA--TCTcaccta-tatgaaccagatacca-tggtgatggaaaatatcagtgagccatacagagagagaaaccttccctcaagtagctgcattttagcagagCTCCAGGTAGGTCACTACTCACCCTCTAAATCTTTTGAAGAGGCTTCA-ttttttgttggtttttgttttgttt----tgttgtgatatgcagtcttgctctgtctcccagcccagattgcagtggcacgatctcggctaactgcaatctccacctcctgggtttaagcaattct---acctcagcctcccaagtagctgggattacaggcacctgccaccacacccggctaatttttgtattttttagtagagatggggttttgccatgtcggccaggctggtcttgaacacctgacctcaggtgatctgcccgccttggtctcccaaagtgctgggattacaagcgtgagccactgcgcccagccTT i ponAbe2.chr1 I 193 C 0 s nomLeu3.chr5 140124101 513 - 143122389 TGAGAACAAAAACCACCTACAGAAGGAGTTGAAGAACAATTCGCCCTTAAA--TCTcacctattatgaactagatgccattggtgatggaaaatatcagtgacccatacagagagagaaacctgccctcaagtagctgcattttagcagagCTCCAGGTAGGTCACTACTCA-CCTGTAAATCTTTTGAAGGGGTTTCAtttttttgttggtttttgttttgttt----tgttttgagatgcagtctcgctctgtctcccagcccagattgcagtggcacgatctcggctcactgcaatctccacctcctgggttcaagcaattcttccacctcagccccccaagtagctgggattacaggcatctgccaccacacccggctaatttttgtattttttagtagagatggggttttgccatgttggccaggctggtcttgaacacctgacctcaggtgatctgcccgccttggcctcccaaagtgctgggattacaagcgtgagccactgcgcctggccTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16840615 512 - 229590362 TGAGAACAAAAACCACCTACAGAAGAAACTGAAGAGCAATTCACCCTTAAA--TCTTACCTATTATGAATTAGATGCcattggtgattgaa-----cagtgacccatacagagagagaaacctgccctcaagtagctgcattgtagcagagCTCCAGGTAGGTCACTGTTCA-CTTCTAAATCTTTTGAAGAGGTTTCATTTTTTTGTTGGtttttgttttgttttgtttgttttgagatgcagtctcgctttgtctcccagcccggattgcagtggcacgatctcggctcactgcaacctccacctcgtgggttcaagcaattcttccacctcagcctcccaagtagctgggattacaggcacctgccaccacacccagctaatttctgtattttttagtagagatggggttttgccatgttggccaggctggtcttgaacaccggacctcaggtgatctgcccgcctcggcctcccaaagtgctggtattacaagcgtgagccactgcacccggccTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223600726 512 - 227556264 TGAGAACAAAAACCACCTACAGAAGAAACTGAAGAGCAATTCGCCCTTAAA--TCTTACCTATTATGAATTAGATGCcattggtgattgaa-----cagtgacccatacagagagagaaacctgccctcaagtagctgcattgtagcagagCTCCAGGTAGGTCACTGTTCA-CTTCTAAATCTTTTGAAGAGGTTTCATTTTTTTGTTGGtttttgttttgttttgtttgttttgagatgcagtctcgctttgtctcccagcccggattgcagtggcacgatctcggctcactgcaacctccacctcgtgggttcaagcaattcttccacctcagcctcccaagtagctgggattacaggcacctgccaccacacccagctaatttctgtattttttagtagagatggggttttgccatgttggccaggctggtcttgaacaccggacctcaggtgatctgcccgcctcggcctcccaaagtgctggtattacaagcgtgagccactgcacccagccTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16651749 513 - 220367699 TGATAACAAAAACCACCTACAGAAGGAACTGAAGAGCAGTTCGCCCTTAAA--TCTTACCTATTATGAATTAGATGCCATTGGTGATTGAAAATATCAGTGACCCATAC----AGAGAAACCTGCCCGCAAGTAGCTGCATTGTAGCAGAGCTCCAGGTAGGTCACTGTTCA-CCTCTAAATCTTTTGAAgaggtttcatttttttgttggtttttgttttgttttgtttgttttgagatgcagtctcgctctgtctcccagcccggattgcagtggcacgatctcggctcactgcaacctccacctcctgggttcaagcagttcttccacctcagcctcccaagtagctgggattagaggcacctgccaccacacccagctaatttttgtattttttagtagagatggggttttgccatgttggccaggctggtcttgaacaccggacctcaggtgatctgcccgccttggcctcccaaagtgctggtattacaagcgtgagccaccgcacccagcctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82451513 517 + 85787240 TGAGAACAAAAACCACCTACAGAAGGCACTGAAGAGCAATTTGCCCTTAAA--TCTTACCTATTATGAATTAGATGCCATTGGTGATTGAAAATATCAGTGATCCATACAGAGAGAGAAACCTGCCCTCAAGTAGCTGCATTGTAGCAGAGCTCCAGGTAGGTCACTATTCA-CCTCTAAATCTTTTGAAGAGGTTTCATTTTTTTGTTGGtttttgttttgttttgtttgttttgagatgcagtctcgctctgtctcccagcccagattgcagtggcacgatctcggctcactgcaacctccacctcctgggttcaagcaattcttccaccttagcctcccaagtagctgggattacaggcacctgccaccacacccggctaatttctgtattttttagtagagatggggtttcgccatgttggccaggctggtcttgaacaccggacctcaggtgatctgcccacctcggcctcccaaaatgctggtattacaagcgtgagccactgcacctagccTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14133565 493 - 49578535 TGAGAAC-AAAACCACCTACAGAAAAGGTTGAAGAGCACTTAGCCCTTTAACGTCTCACCTATGATGCACCAGATG-TGCTGGTGATGGAGAGTATCAGTGACGCACACAGAGGGAG--ACCTGCCCTCAGAGAGCTGCACTTTGGAAGAGTTCCAGGTAGGGGGCTACACA-CTTCTACATCATTTGAAGAGGtttctttctttctttctttttt------------------tgagatggagtctcactctgtcactcaggctggagtgcagtggcacgatctctactcactgcaacctccacctcc-gggttcaagcaactctcccacctcagcctcctgagtagctgagattacaggcacctgccatcatgcctggctaatttttgta-tttttagtagagacggggtttcaccatgttggctaggatggccttgatctcctgacctt--gtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I e canFam3.chr7 36300303 858 + 80974532 I a score=1919075.000000 s hg38.chr1_KI270759v1_alt 124220 809 + 425601 GTTGTTGTTTTATAGCCCTAGAAAAACTGGTACCAAACAATAAGGAAGAGACTGAAGGGAAAAAAGAAGATGGGGAGGGGCTTTAAGAATTCTGTTCCCATAGAACTTTGTGACTCACTGAAGGCCAGCAAGCTGGAATTGTCgtgatactcacagtggacattaacgaaaacagtgaataaaagtaaaaggggaaatgttctttctttgtgaatacCCTCGTGATCTGAACTGGGGGCTGAAGAGGGAGGATGGGGTGACATGGAGTAGATTCAGGAAAAGCAGAGTAGAAACCTGTGAACTGAAGGAGAGGACCAATGGATGAGGAGAGGATGCAATTTTATCTAGTATATGTTGCGTAAATTTGTTTCCTGGTCTACACTTCTACCACCACCCTAATACAGTACCGCTATAATATGTTTCCTTCCTTCAGCACTGACTCATTTAAAAATCGTACTGGCCAGCCAGGTggtgccatggctcacaacttgtaatcccagtactttgagaggctgaggtgggaggacagcttgaggccaggagttcaagaccagcctgggcaacatagcaagaccctgtatctggagaaaaatttaaaaaagcaaccaagtgcagtggcacatacctgtaatcctagctacttgcggggctggggcaggaggatcgcttgagcccgggaggttgaggctgcagtgagctacgatctcaccagggcactccagcctaggcgacaagagtgagacccttctcttag---aaaaaaaaaTAATCataatagcctacatttttgagggcttcttatatgccacaca s panTro4.chr1 224875170 808 + 228333871 GTTGTTGTTTTATAGCCCTAGAAAAA-TGGTACCAAACAATAAGGAAGAGACTGAAGGGAAAAAAGAAGATGGGGAGGGGCTTTAAGAATTCTGTTCCCATAGAACTTTGTGACTCACTGAAGGGCAGCAAGCTGGAATTGTCATGATACTCACAGTGGACATTAATGAAAACAGTGAATAAAAGTAAAAGGGGAAATGTTCTTTCTTTGTGAATACCCTCGTGATCTGAACTGGGGGCTGAAGAGGGAGGATGGGGTGACATGGAGTAGATTCAGGAAAAGCAGAGTAGAAACCTGTGAACTGAAGGAGAGGAGCAATGGATGAGGAGAGGATGCAATTTTATCTAGTATATGTTGTGTAAATTTGTTTCCTGGTCTACACTTCTACCACCACCCTAATACAGTACCGCTATAATATGTTTCCTTCCTTCAGCACTGACTCATTTAAAAATCATACTGGCCAGCCAGGTggtgccatggctcacaacttgtaatcccagtactttgagaggctgaggtgggaggacagcttgaggccaggagttcaagaccagcctgggcaacatagcaagaccctgtatctggagaaacatttaaaaaaacaaccaagtgcagtggcacatacctgtaatcctagctacttgcggggctggggcaggaggatcgcttgagcccgggaggttgaggctgcagtgagctacgatctcaccagggcactccagcctaggcgacaagagtgagacccttctcttag---aaaaaaaaaTAATCataatagcctacatttttgagggcttcttatatgccacaca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226231551 808 - 229942017 GTTGTTGTTTTATAGCCCTAGAAAAACTGGTCCCAAACAATAAGGAAGAGACTGAAGGGAAAAAAGAAGATGGGGAGGGGCTTTAAGAATTCTGTTGCCGTAGAACTTTGTGACTCACTCAAGGGCAGCAAGCTGGAATTGTCATGATACTGATGGCGGACATTAACGAAAACAGTGAATAAAAGTAAAAGGGGAAATGTTCTTTCTTTGTGAATACCCTCATGATCTGAATTGGGGGCTGAAGAGGGAGGATGGGGTGACACAGAGTAGATTCAGAAAAAGCAGAGTAGAAACCTGTGAACTGAAAGAGAGGACCGATGGATGAGGAGAGGATGCAATTTTATCTAGTATATGTTGCGTAAATCTGTTTCCTGGTCTACACTTGTAACACCACCCTAGTACAGCACCGCTATTATATGTTTCCTTCCTTCAGCACTGACTCATTTAAAAATCATAATGGCCAGCCAGGTggtgccatggctcacaacttgtaatcccagtactttgagaggctgaggtaggaggatagcttgaggccaggagttcaagaccagcctgggcaacataggaagaccctgtatctgga-aaaaattttaaaaagcaaccaagtgcagtggcacgtacctgtaatcctagctacttgaggggctggggcaggaggatcgcttgagcccgggaggttgaggctgcagtgagctatgatctcaccagggcactccagcctaggcgac-agggtgagacccttctcttaga--aaaaaaaaaTAATCataatagcctacatttttgagggtttcttatatgccacaca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140124614 806 - 143122389 GTTGTTGTTTTATAGCCCTAGAAAAACTGGTCCCAAACAATAAGGAAGAGACTGAAGGGAAAAAAGAAGATGGGGAGGGGCTTTAAGAATTCTGTTCCCATAGAACTTTGTGACTCACTCAAGGGCAGCAAGCTGGAATTGTCGTGATACTGACAGTGGACATTAACAAAAACAGTGAATAAAAGTAAAAGGGGAAATGTTCTTTCTTTGTGAATACCCTCATGATCCGAATTGGGGGCTGAAGAGGGAGGATGGGGTGACATGGAGTAGATTCAG--AAAGCAGAGTAGAAACGTGTGAACTGAAGGAGAGGACCGATGGATGAGGAGAGGATGCAATTTTATCTAGTATATGTTACGTAAATTTGTTTCCTGGTCTACACTTCTACCACCACCCTAATACAGTACCTCTATAACGTGCTTCCTTCCTTCAGCACTGACTCATTTAAAAATCATAATGACCAGCCAGGTAgtgccatggctcacaacttgtaatcccagtactttgagaggctgaggtgggaggattgcttgaggccaggagtttaagaccagcttgggcaacatagcaagaccctgtatctgga-aaaaattttaaaaagcagcaaagtgcagtggcacatacctgtaatcctagctacttgtggggctggggcaggaggatcgcttgagcccaggaggttgaggctgcagtgagctatgatgtcaccagggcactccagcctaggcgac-agagtgagacccttctcttaga--aaaaaaaaaTAATCataatagcctacatttttgaggatttcttatatgccacaca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16841127 807 - 229590362 GTTGTTGTTTTATAGCCCTAGAAAAACTGGTCCCATACAATATGGAAGAGACTGAAGGGAAAAAAGAAGATGGGGAGGGGCTTTAAGAATTCTGTTCCCATAGAACTTTGTGACTCACTCAAGGGCAGCAAGCTGGAATTGTCACGACACTGACAGTGGACATTGACGAAAACAGTGAATAAAAGTAAAAGGGGAAGTGTTCTTTCTTTGTGCATACCCTCATGATCTGAATTGGGGGCTGAAGAGGGAGGATGGGGTGACATGGAGTTGATTCAGAAAAAGCAGAGTAGAAACCTGTGAACTGAAGGAG-GGACCGATGGATGAGGAGAGGATGCAATTTTATCTAGCATATGTTGTGTAAATGTGTTTCCTGGTCTACACTTCTACCACCACCCTGATACAGTACCTCTATAACATGTTTCCTTCCTTCAGCCCTGACTCATTTAAAAATCATAATGGCCAGCCCGGTggtgccgtgcctcacagcttgtaatcccagtactttgagagactgaggtgggaggattgcttgaggccaggaattcaagaccagcctgggcaacatgacaagaccctgtatctgga-aaaaaatttaaaaagcaaccaagtgcagtggcacatacctgtaaaactagctacttgggaggcttgggcaggaggatcgcttgagcctgggaggttgaggctgcagtgagctatgatctcaccagtgcactctagcctaggcaac-agagtgagacccttctcttagg--aaaaaaaaaaaaTCGtaatagcctacatttttgagggtttcttatatgccacaca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223601238 808 - 227556264 GTTGTTGTTTTATAGCCCTAGAAAAACTGGTCCCATACAATATGGAAGAGACTGAAGGGAAAAAAGAAGATGGGGAGGGGCTTTAAGAATTCTGTTCCCATAGAACTTTGTGACTCACTCAAGGGCAGCAAGCTGGAATTGTCACGACACTGACAGTGGACATTGACGAAAACAGTGAATAAAAGTAAAAGGGGAAGTGTTCTTTCTTTGTGCATACCCTCATGATCTGAATTGGGGGCTGAAGAGGGAGGATGGGGTGACATGGAGTTGATTCAGAAAAAGCAGAGTAGAAACCTGTGAACTGAAGGAG-GGACCGATGGATGAGGAGAGGATGCAATTTTATCTAGCATATGTTGTGTAAATGTGTTTCCTGGTCTACACTTCTACCACCACCCTGATACAGTACCTCTATAACATGTTTCCTTCCTTCAGCCCTGACTCATTTAAAAATCATAATGGCCAGCCCGGTggtgccgtgcctcacagcttgtaatcccagtactttgagagactgaggtgggaggattgcttgaggccaggaattcaagaccagcctgggcaacttgacaagaccctgtatctgga-aaaaaatttaaaaagcaaccaagtgcagtggcacatacctgtaaaactagctacttgggaggcttgggcaggaggatcgcttgagcctgggaggttgaggctgcagtgagctatgatctcaccagtgcactctagcctaggcaac-agagtgagacccttctcttagg-aaaaaaaaaaaaaTCGtaatagcctacatttttgagggtttcttatatgccacaca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16652262 809 - 220367699 gttgttgttttatagccCTAGAAAAACCGGTCCCAAACAATATGGAAGAGACTGAAGGGAAAAACGAAGATGGGGAGGGGCTTTAAGAATTCTGTTCCCATAGAACTTTGTGACTCACTCAAGGGCAGCAAGCTGGAATTGTCACGACACTGACAGTGGACATTGACGAAAACAGTGAATAAAAGTAAAAGGGGAAGTGTTCTTTCTTTGTGCATACCCTCATGATCTGAATTGggggctgaagagggaggatgggGTGACATGGAGTTGATTCAGAAAAAGCAGAGTAGAAACCTGTGAACTGAAGGAG-GGACCGATGGATGAGGAGAGGATGCAATTTCATCTAGCATATGTTGTGTAAATGTGTTTCCTGGTCTACACTTCTACCACCACCCTAATGCAGTACCTCTATAACATGTTTCCTTCCTTCAGCCcttactcatttaaaaatcataatggcCAGCCCGGTGGTGCCATGGCTCacagcttgtaatcccagtactttgagagactgaggtgggaggatcgcttgaggccaggaattcaagaccagcctgggcaacatgacaagaccctgtatctgga-aaaaaatttaaaaagcaaccaagtgcagtggcacatacctgtaatcctagctacttgggaggcttgggcaggaggatcgcttgagcctgggaggttgaggctgcagtgagctatgatctcaccagtgcactctagcctaggcgac-agagtgagacccttctcttagagaaaaaaaaaaaaatcgtaataGCCTACATTTTTGAGAGTTTCTTATATGCCACACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82452030 804 + 85787240 TTTGTTGTTTTATAGCCCTAGAAAAACTGGTCCCATACAATCTGGAAGAGACTGAAGGGAAGAAAGAAGATGGGGAGGGACTTTAAGAATTCTGTTCCCATAGAACTTTGTGACTCACTCAAGGGCAGCAAGCTGGAATTGTCACGATACTGACAGTGGACATTGACGAAAACAGTGAATAAAAGTAAAAGGGGAAGTGTTCTTTCTTTTTGCACACCCTCATGGTCTGAATT-GGGGCTGAAGAGGGAGGGTGGGGTGACATGGAGTCGATTCAGAAAAAGCAGAGTAGAAACCTGTGAACTGAAGGAGAGGACCGATGGATGAGGAGAGGATGCAATTTTATCTAGCATATGTTGCGTAAATGTGTTTCCTGGTCTATACTTCTACCACCACCCTAATAGGGTACGTCTATAACATGTTTCCTTCCTTCAGCACTGACTCATTTAAAAATCATAATGGCCAGCCCGGTggtgccgtggctcacagcttgtaatcccagtactttgagagactgaggtgggaggattgcttgaggccagaagttcaagaccagcctgggcaacataacaagaccccgtatctgga-aaaaaatttaaaaagcaaccaagtgcagtggcacatacctgtaatcctagctacttgggaagcttgggcaggaggatcgcttgagcctgggaggttgaggctgcagtgagctatgatctcaccagtgcactctagcctaggcgac-agagtgagacccttctcttaga-----aaaaaaaaaTCatagtagcctacatttttgagagtttcttatatgccacaca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I e canFam3.chr7 36300303 858 + 80974532 I e calJac3.chr19 14134058 0 - 49578535 C a score=43232.000000 s hg38.chr1_KI270759v1_alt 125029 13 + 425601 ctattctgagttc s panTro4.chr1 224875978 13 + 228333871 ctattctgagttc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226232359 13 - 229942017 ctattctgagttc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140125420 13 - 143122389 ctattctgagttc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16841934 13 - 229590362 ctattctgagttc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223602046 13 - 227556264 ctattctgagttc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16653071 13 - 220367699 CTATTCTGAGTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82452834 13 + 85787240 ctattctgagttc i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36301161 13 + 80974532 ctgttctgagttc i canFam3.chr7 I 858 C 0 e mm10.chr1 178721518 2564 + 195471971 I e calJac3.chr19 14134058 0 - 49578535 C a score=1333206.000000 s hg38.chr1_KI270759v1_alt 125042 437 + 425601 ttgacacacatttaatcttcagaagcccccatgagttggccgtgtttttatcccattgtttagacgtggaaactgaagcacagagggcagaagtaagttgaccaagtccacacaactagtaggcaacgcatagggatccgag-ccaggtgtctgattccagaggccacaagccagaatataagctccaaatataaggtggggacatttgtgtctttgttcttggctgaagctccagcacct-aaaagaacactcaagaaatgtttgttgaataactcaat-GATGGTCTTAGCCACCATGCTCTCCTGCCTCCAAACTCAAGATGGGTTGCAATGGACA-GGGGTCATTAACTAAGCAGTCTCAATGCAACGATCTCAAT--GTGAGACCAAAGTAGAGAATGGGTACAAAGTGCACCACAGAAGCT-ATAGGGGGAAGCTTTT s panTro4.chr1 224875991 431 + 228333871 ttgacacacatttaatcttcagaagcccccatgagttggccgtgtttttatcccattgtttagacgtggaaactgaagcacagagggcag----aagttgaccaagtccacacagctagtaggcaacgcatagggatccgag-ccaggtgtctgattccagaggccACAAGccagaatataagctccaaatataaggtggggacatttgtgtctttgttcttggctgaagctccagcgcct-aaaagaacactcaagaaatgtttgttgaataactcaat-GATGGTCTTAGCCACCGTGTTCTCCTGCCTCCGAACTCAAGATGGGTTACAATGGAC--GGGGTCACTAAATAAGC-GTCTCAATGCAACGATCTCAAT--GTGAGACCAAAGTAGAGAATGGGTACAAAGTGCACCACAGAAGCT-ATAGGGGGAAGCTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226232372 438 - 229942017 ttgacacacatttaatcttcagaagcccccatgagttggccgtgtttttatcccattgtttagacgtggaaactgaagcacagagggaagaagtaacttgaccaagttcacacagctagtaggcaacgtgtagggatccgag-ccaggtgtctgattccagaggccACAAGccagaatataagctccaaatataaggtgcggacatttgtgtctttgttcttggctgaagctccagcacct-aaaagaacactcaagaaatgtttgttgaataactcaat-GGTGCTCTTAGCCACCATGTTCTCCTGCCTCCAAACTCAAGATGGGTTGCAATGGATAGGGGGTCATTAGATAAATAGTCTCAATGCAACGATCTCAAT--GTGAGACCAAAGTAGAGAATGGGTGCAAAGTGCACCACAGAAGCT-ATAGGGGGAAGCGTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140125433 437 - 143122389 ttgacacacatttaatcttcagaagcccccatgagttggccatgtttttatcccattgcttagacgtggaaactgaagcccagagggaagaagtaacttgaccaagttcacacagctagtaggcaacgcatagggatctgag-ccaggtgtctgattccagaggccACAAGccagaatataagctcaaaatacaaggtggggacatttgtgtctttgttcttggctgaagctccagcacct-aaaagaacactcaagaaatgtttgttgaataactcaat-GATGCTCTTAGCCACCATGTTCTCCTGCCTCCAAACTCAAGATGGGTTGCAATGGATA-GGGGTCGTTAAATAAATAGTCTCAATGCAATGGTCTCAAC--GTGAGACCAAAGTAGAGAATGGGTACAAAGTGCACCACAGAAGCT-ATAGGGGGAAGCTTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16841947 424 - 229590362 ttgacacacatttaatcttaagaagcccccatgagttggccgtgtttttatcccgttgtttagacgtggaaactgaagcac------------taacctgaccaagttcaaacagctagcaggcaatgcgcaggtatctgag-ccaggcgtctggttccagaggccACAAaccagaatataagctccagatacaaggtgggggcatttgtgtctttgttcttggctgaagttccagcacct-aaaagaacactcaagaaatgtttgttgaataaCTCGAT-GATGCTCTTAGCCACCATGTTCTCCTGCCTCCAAACCCAAGATGGGTTGCAATGGATA-GGGGTCATTAAATACATAGTCTCAATGCAACGATCTCAAT--GTAAGACTAAAGTAGAGAATGGGTGCAAAGTGCACCACAGAAGC--ATAGCGGGAAGCATTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223602059 424 - 227556264 ttgacacacatttaatcttaagaagcccccatgagttggccgtgtttttatcccgttgtttagacgtggaaactgaagcac------------taacctgaccaagttcaaacagctagcaggcaatgcgcaggtatctgag-ccaggcgtctggttccagaggccACAAaccagaatataagctccagatacaaggtgggggcatttgtgtctttgttcttggctgaagttccagcacct-aaaagaacactcaagaaatgtttgttgaataaCTCGAT-GATGCTCTTAGCCACCATGTTCTCCTGCCTCCAAACCCAAGATGGGTTGCAATGGATA-GGGGTCATTAAATACATAGTCTCAATGCAACGATCTCAAT--GTAAGACTAAAGTAGAGAATGGGTGCAAAGTGCACCACAGAAGC--ATAGCGGGAAGCATTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16653084 422 - 220367699 TTGACACACATTTAATCTTAAGAAGCCCCCATGAGTTGGCCGTGTTTTTATCCCATTGTTTAGACGTGGAAACTGAAGCAC------------TAACCTGACCAAGTTCAAACAGCTAGTA-GCAATGTGTA-GTATCCGAG-CCAGGCGTCTGGTTCCAGAGGCCACAAACCAGAATATAAGCTCCAGATATAAGCTGGGGGcatttgtgtctttgttcttagcTGAAGTTCCAGCACCT-AAAAGAacactcaagaaatgtttgttgaataactCAGT-GATGCTCTTAGCCACCATGTTCTCCTGCCTCCAAACCCAAGATGGGTTGCAATGGATA-GGGGTCATTAAATACATAGTCTCAATGCAACGATCTCAAT--GTAAGACCAAAGTAGAGAATGGGTGCAAAGTGCACCACAGAAGC--ATAGCGGGAAGCATTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82452847 424 + 85787240 ttgacacacatttaatcttaagaagcccccatgagttggccatgtttttatcccattgtttagacgtggaaactgaagcac------------taacctgaccaagttcaaacagctagcaggcaatgcgcaggtatccaag-ccaggtgtctgtttccagaggccacaaaccagaatataagctccaaatataagcatagggcatttgtgtctttgttcttggctgaagttccagcacct-aaaagaacactcaagaaatgtttgttgaataaCTCACT-GATGCTCTTAGCCACCATGTTCTCCTGCCTCCAAACCCAAGATGGGTTGCAATGGATA-GGGGTCATTAAATACATAGTCTCAATGCAACGATCTCAAT--GTAAGACCAAAGTAGAGAATGGGTACAAAGTGCACCACAGAAGC--ATAGTGGGAAACATTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14134058 420 - 49578535 TTTATacacattaaacctgcaaatgcccccacaagctggccgtgttcttatcccattgattatatgtagaaactgaagcacagagggaggaagtcacttgaccaagttcgcacagctagtaggcaacgtgttggtatccgag-tcaggtgtctgattccggaggccACAAaccagaatctaagctccaa----agggtagggacattcatgtctttgttcttggctgaagctccagtaccc-aaaagaacactcgagaaatgtttgttgaatgactcaaC-AATGCTCTTAGCCACCATGTTCTCCTGCCTCCAAACTCAAGATGGGTTGCAGTGGATA-GGGGTCATTGAATA--------------AATGATCTCAGT--GTGAGCTGGAAGGACAGAACGGGTGCCATGCGTGCCACGGAAGCTCTTGGGGGGGAGCATTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36301174 426 + 80974532 tttacacaaagttaacatt-aaaagcccctgtgagtttgccctattcttagcctatggcttagatacagaaaccaagtcacggaatggtgtagtagcttgacagaagctatgcagctggca---agtgcattagtcctcaagcccagctgtttgatggcggggtccatgAACCAGGACCAaagctctgta---agggcagggccattggtgtctttgttctgggctgaagccccagtgcctgaaaaaagcacgcaagaaatgtgcattgaatgaatgaaCAAACACTCTTGGTCACCATGCTCTCCTGCCTCCAGACTCAAGATGGGCTACAGTCAGTG-GA------CAACTGTGAAGCCTC--TGC-ATGAGGTCAATAAGTGACACCAAAGAAGGGAATGGATGCAAAGTAAACCACAGAAGCT-ACAGAGAAAAACATTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I a score=36585.000000 s hg38.chr1_KI270759v1_alt 125479 19 + 425601 GGAACAACTACTC---------------tttttt s panTro4.chr1 224876422 29 + 228333871 GGAACAACTGCTC-----tttttttttttttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226232810 34 - 229942017 GGAACAATGACTCttttttttttttttttttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140125870 32 - 143122389 GGAACAACTACTC--ttttttttttttttttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16842371 19 - 229590362 GGACCAACTACTC---------------tttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223602483 19 - 227556264 GGACCAACTACTC---------------tttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16653506 19 - 220367699 GGAccaactactc---------------tttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82453271 19 + 85787240 GGACCAACTACTC---------------tttttt i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36301600 19 + 80974532 TGACCAACGGCTT---------------TCTATT i canFam3.chr7 C 0 I 1 e mm10.chr1 178721518 2564 + 195471971 I e calJac3.chr19 14134478 0 - 49578535 C a score=5096.000000 s hg38.chr1_KI270759v1_alt 125498 2 + 425601 tt s panTro4.chr1 224876451 2 + 228333871 tt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226232844 2 - 229942017 tt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140125902 2 - 143122389 tt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16842390 2 - 229590362 tt i rheMac3.chr1 C 0 I 383 s macFas5.chr1 223602502 2 - 227556264 tt i macFas5.chr1 C 0 I 15 s papAnu2.chr1 16653525 2 - 220367699 tt i papAnu2.chr1 C 0 I 16 s chlSab2.chr25 82453290 2 + 85787240 tt i chlSab2.chr25 C 0 I 10 e mm10.chr1 178721518 2564 + 195471971 I e canFam3.chr7 36301619 1 + 80974532 I e calJac3.chr19 14134478 0 - 49578535 C a score=538703.000000 s hg38.chr1_KI270759v1_alt 125500 322 + 425601 gagacagagtctcgctccgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctctgcttcctgggttcaagcaattctcctgcctcagcctcctgagtagctaggactgcaggcgcccgccaccatgcccagctaa------tttttttttttttttttgagacagagtcttgcattgtcgcccaggctagggtgcagtggtgcgatctcggctcactgcaacctctgcctcccggcttcaggcgattctcctgcctcagcctcccaagtagctgggattacaggcatccgccaccatgcccagctca-ttttttc s panTro4.chr1 224876453 323 + 228333871 gagacagagtcttgctctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcaacctctgcttcctgggttcaagcaattctcctgcctcagcctcctgagtagctaggactgcaggcgcctgccaccatgcccagctaat-----tttttttttttttttttgagacagagtctcgcattgttgcccaggctagggtgcagtgctgcgatctcggctcactgcaacctccgcctcccagcttcaggtgattctcctgcctcagcctcccaagtagctgggattacaggcatctgccaccacgcccagctca-ttttttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226232846 329 - 229942017 gagatggagtctcgccctgttgcccaggctggagtgcagtggcatgatcttagctcactgcaacctctgcctcctgggttcaagaaattctcctgcctcagcctcctgagtagctaggaatgcaggcacctgccaccacgcccagctaatttttctttttttttttttttttgagacagagtctcgcactgtcacccaggctagagtgcagtggtgcgatctcggctcactgcaacctccgcctcccggcttcaggtgattctcctgcctcagcctcccaagtagctgggattacaggcatccgccaccatgcccagctcatttttttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140125904 321 - 143122389 gagacagagtctcgctctgtcacccaggctggagtgcagtggcatgatctcggctcactgcaacctctgcctcctgggttcaagcaattctcttgcctcagcctcccgagtagctaggactgcaggcgcctgcca-cacgcccagctaa------tttttttttttttttttgaaacagaatctggcactgtcgcccaggctagagtgcagtggtgcgatctcggctcactgcaacctccgcctcccggcttcaggtgattctcctgcctcagcctcccaagtagctgggattacaggcatccgccaccatgcccagctct-ttttttt i nomLeu3.chr5 C 0 I 120 s macFas5.chr1 223602519 315 - 227556264 gagacagagtctcgccctgtcgcccaggctggagtgcagtgacacgatctcggctcactgcaacctccacctgctgggttcaagcagttctcctgcctcagcctcccgagcagctaggactgcaggtgcctgccaccatgcccagataa-------------ttttttttttgagacagagtcttgcactgtcgcccaggctggagtgcagtggtgtgatctcagctcactgcagcctccgcctcctggcttcaagcaattttcctgcctcagcctcccaagtagctggggttacaggcatctgccaccacacccagctca-ttttttg i macFas5.chr1 I 15 C 0 s papAnu2.chr1 16653543 314 - 220367699 gagacagagtctcgccctgtca-ccaggctggagtgcagtgacacgatctcggctcactgcaacctccacctgccgggttcaagcagttctcctgcctcagcctcccgagcagctaggactgcaggtgcctgccaccatgcccagataa-------------ttttttttttgagatggagtcttgcactgtcgtccaggctggagtgcagtggtgtgatctcggctcactgcaacctccacctcctggcttcaagcaattttcctgcctcagcctcacaagtagctgggattacaggcgtccgccaccacacccagctca-ttttttg i papAnu2.chr1 I 16 C 0 s chlSab2.chr25 82453302 316 + 85787240 aagacagagtctcgccctgtcgcccaggctggagtgcagtgacacgatctcggctcactgcaacctccacctgccaggttcaagcagttctcccgcctcagcctcccgagcagctaggactgcaggcacctgccaccatgcccagctaa-------------ttttttttttgagacagagtcttgctctgtcgcccgggctggagtgcagtggtgtgatctcggctcactgcaacctccgcctcctggcttcaagcaattttcctgcctcagcctcccaagtagctggagctacaggcgtccgccaccacacccagctcatttttttg i chlSab2.chr25 I 10 C 0 e mm10.chr1 178721518 2564 + 195471971 I e canFam3.chr7 36301619 1 + 80974532 I e calJac3.chr19 14134478 0 - 49578535 C e rheMac3.chr1 16842392 383 - 229590362 I a score=202635.000000 s hg38.chr1_KI270759v1_alt 125822 121 + 425601 tatttttagtagagacagggtttcactatgttggccaggctggtctcaaactcctgaccttgtgatctacccacctcagcctcccaaagtgctgggattacaggcgtgaaccactgcgccc s panTro4.chr1 224876776 121 + 228333871 tagttttagtagagacagggtttcactatgttggccaggctggtctcaaactcctgaccttgtgatctacccacctcagcctcccaaagtgctgggattacaggcgtgagccactgcgccc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226233175 121 - 229942017 tatttttagtagagacggggtttcactatgttggtcaggctggtctcaaactcctgaccttgtgatctgcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgcgccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140126345 119 - 143122389 tatttttagtggaaacagggtttcaccatattggtcaggctggtcttgaact-ctga-cttgtgttccacccactttggcctcccaaagtgctgggattacaggcgtgagccactgcgcac i nomLeu3.chr5 I 120 C 0 s macFas5.chr1 223602834 121 - 227556264 tatttttagtagagatggggtttcaccatactggccaggctggtctcaaactcctgacattgtgatctacccacctcagcctcccgaagtgctgggattacaggcgtgagccaccatgtct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16653857 120 - 220367699 tatttttagtagagatggggtttcactatgttggccaggctggtctcaaactcctgaccttgtgatctacccacctcagcctcccaaagtgccgggattacaggcgtgagcca-cgtgcct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82453618 121 + 85787240 tatttttagtagagatggggtttcactctgttggccaggctggtctcaaactcctgaccttgtgatctacccacctcagccccccaaagtgctgggattacagtcgtgagccaccgtgcct i chlSab2.chr25 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I e canFam3.chr7 36301619 1 + 80974532 I e calJac3.chr19 14134478 0 - 49578535 C e rheMac3.chr1 16842392 383 - 229590362 I a score=35338.000000 s hg38.chr1_KI270759v1_alt 125943 15 + 425601 agccaatttttatat s panTro4.chr1 224876897 15 + 228333871 agccaatttttatat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226233296 15 - 229942017 agccaatctttgtgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140126464 15 - 143122389 agccaatttttgtat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16842775 15 - 229590362 Agccaatttttgtat i rheMac3.chr1 I 383 C 0 s macFas5.chr1 223602955 15 - 227556264 agccaatttttgtat i macFas5.chr1 C 0 M 635 s papAnu2.chr1 16653977 15 - 220367699 agccaatttttgtat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82453739 15 + 85787240 agccaatttttgtgt i chlSab2.chr25 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I e canFam3.chr7 36301619 1 + 80974532 I e calJac3.chr19 14134478 0 - 49578535 C a score=59999.000000 s hg38.chr1_KI270759v1_alt 125958 34 + 425601 ttttagtagaaacagggtttcaccatattggcca s panTro4.chr1 224876912 34 + 228333871 ttttagtagaaacagggtttcaccatattggcca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226233311 34 - 229942017 ttttagtagagacagggtttcagcatattggcca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140126479 34 - 143122389 ttttagtagagatggggtttcaccatattggcca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16842790 34 - 229590362 ttttagtagagatggggtttcaccatactggcca i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16653992 34 - 220367699 ttttagtagagacggggtttcaccatactggcca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82453754 34 + 85787240 ttttagtagagacggggtttcactatactggcca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I e canFam3.chr7 36301619 1 + 80974532 I e calJac3.chr19 14134478 0 - 49578535 C e macFas5.chr1 223602970 635 - 227556264 M a score=220459.000000 s hg38.chr1_KI270759v1_alt 125992 88 + 425601 ggctggtcttgaactcctgaccttgtgttccacccaccttggcctcccaaagtcctgggattacaggcgtgagccactgcgcctggcc s panTro4.chr1 224876946 88 + 228333871 ggctggtcttgaactcctgaccttgtgttccacctaccttggcctcccaaagtcctgggattacaggcgtgagccactgcgcctggcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226233345 88 - 229942017 ggctggtcttgaactcctgaccttgcgttccacccaccttggcctcccaaagtgctgggattacaggcgtgagccactgtgcctggcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140126513 88 - 143122389 ggctggtcttgaactcctggccttgtgttccacccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcctggcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16842824 88 - 229590362 ggctggtcttgaactcctgaccttgtgttccacccaccttggcctcccaaattgctgggattacaggcatgagccaccgcgcctggcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223603605 88 - 227556264 ggctggtcttgaactcctgaccttgtgttccacccaccttggcctcccaaattgctgggattacaggcatgagccaccgcgcctggcc i macFas5.chr1 M 635 C 0 s papAnu2.chr1 16654026 88 - 220367699 ggctggtcttgaactcctgaccttgtgttccacccaccttggcctcccaaattgctgggattacaggcatgagccaccacgcctggcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82453788 88 + 85787240 ggttggtcttgaactcctgaccttgtgctccacccaccttggcctcccaaattgctgggattacaggcatgaaccaccgcgcctggcc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I e canFam3.chr7 36301619 1 + 80974532 I e calJac3.chr19 14134478 0 - 49578535 C a score=59212.000000 s hg38.chr1_KI270759v1_alt 126080 20 + 425601 TGACCAACTACTGTTTATGC s panTro4.chr1 224877034 20 + 228333871 TGACCAACTACTGTTTATGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226233433 20 - 229942017 TGACCAACTACTGTTTATGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140126601 20 - 143122389 TGACCAACTACTGCTTATGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16842912 20 - 229590362 TGACCAACTACTCTTTATGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223603693 20 - 227556264 TGACCAACTACTCTTTATGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16654114 20 - 220367699 tgaccAACTACTCTTTATGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82453876 20 + 85787240 TGACCAACTACTCTTTATGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14134478 20 - 49578535 TGACCAACAACTCTTTATTC i calJac3.chr19 C 0 C 0 e mm10.chr1 178721518 2564 + 195471971 I e canFam3.chr7 36301619 1 + 80974532 I a score=285387.000000 s hg38.chr1_KI270759v1_alt 126100 78 + 425601 TTCTAA-TTTTGTTAGTTACTAAAATATCgctttc----agtctcatgcagtaaaagcaaaaggtttttcagtga-cttaca-ag s panTro4.chr1 224877054 78 + 228333871 TTCTAA-TTTTGTTAGTTACTAAAATATCActttc----ggtctcatgcagtaaaagcaaaaggtttttcagtga-cttaca-ag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226233453 78 - 229942017 TTCTAA-TTTTGTTAGTTACTAAAATCTTgctttc----agtctcatgcagtaaaagcaaaaggtttttcagtga-cttaca-ag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140126621 78 - 143122389 TTCTAA-TTTTGTTAGTTACTAAAATCTTgctttc----agtctcatgcagtaaaagcaaaaggtttttcagcga-cttaca-gg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16842932 78 - 229590362 TTCTAA-TTTTGTTAGTTACTAAAATATTgcttcc----agtctcatgcagtaaaagcaaaaggtttttcagtga-cttaca-ag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223603713 78 - 227556264 TTCTAA-TTTTGTTAGTTACTAAAATATTgcttcc----agtctcatgcagtaaaagcaaaaggtttttcagtga-cttaca-ag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16654134 77 - 220367699 TT-TAA-TTTTGTTAGTTACTAAAATATTGCTTCC----AGTCTCATGCAGTAGAAGCAAAAGGTTTTTCAGTGA-CTTACA-AG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82453896 78 + 85787240 TTCTAA-TTTTGTTAGTTACTAAAATATTgcttcc----agtctcatgcagtagaaacaaaaggttttccagtga-cttaca-ag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14134498 78 - 49578535 TTCTGA-TTTTGTTAGTTACTAAAATACTgctttc----tgtctcatgcagtaaaagcaaaaggtttttcagtga-cttata-ag i calJac3.chr19 C 0 C 0 s mm10.chr1 178724082 79 + 195471971 TTCTAACTTCTATTAGTTACTGAAATAATGCTTTC----TATATCACAGAGCAAGAATCAAAA--TTTTCAGGGACCTCACACAG i mm10.chr1 I 2564 C 0 s canFam3.chr7 36301620 77 + 80974532 TTCTAA-TTTTGTTAGTTACCAAAATACTGCTTCCTGTAAGTGTCAAGGAATgggaaaagatg-----tgagaga-ctctca-ag i canFam3.chr7 I 1 I 323 a score=655251.000000 s hg38.chr1_KI270759v1_alt 126178 218 + 425601 gctctgtgcacaccatctgtcccctgccctcttcctctgccatgttcccacttgcttactctgctctaggcata---ttgacctccttgcttttcctctaaaagtgccaaggccattccctccccctaggctttgttct-tctgctt--------------------------------ggcttaaccagaccttccttcagatctttgctcaaatgccacttcct-----tggtaaagccctctgtgacctccctgtt s panTro4.chr1 224877132 219 + 228333871 gctctgtgcacaccgtctgtcccctgccctcttcctctgccacgttcccacttgcttactctgctcgaggcata---ttgacctccttgcttttcctctaaaagtgccaaggccattccctccccctaggctttgttctctctgctt--------------------------------ggcttaaccagaccttccttcagatcttagctcaaatgccactttct-----tggtaaagccatctgtgacctccctgtt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226233531 218 - 229942017 gctctgtgcacaccatctgtcccctgccctcttcctctgccacgttcccacttgcttactctgctctaggcata---ttgacctccttgcttttcctctaaaagtgccaaggccattccctccccctaggctttgttct-tctgctt--------------------------------ggcttaaccagcccttccttcagatctttgctcaaatgccactttct-----tggtaaggccctccgtgacctccctgtt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140126699 214 - 143122389 gctctgtgcccacc----gtcccctgccctcttcctctgccacgttcccacttgcttactctgctctaggcata---ttgacctccttgcttttcctctaaaagtgccaaggccattccctccccgtaggctttgttct-tctgctt--------------------------------ggcttaaccagcacttccttcagatctttgctcaaatgccacttttt-----tggtaaggccctccgtgacctccctgct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16843010 218 - 229590362 gctctgtgcgcaccgtctgtcccctgccctcttcctctgccacactcccacttgcttactctgctctaggaata---ttggcctccttgcttttcctctaaaagtgccaaggccattccttctccctaggctttgttct-tctgctt--------------------------------ggcttaaccagcccttccttcagatctttgctcaaatgccactttct-----tggtaaggctctccgtgacctccctgat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223603791 218 - 227556264 gctctgtgcgcaccgtctgtcccctgccctcttcctctgccacactcccacttgcttactctgctctaggaata---ttgacctccttgcttttcctctaaaagtgccaaggccattccttctccctaggctttgttct-tctgctt--------------------------------ggcttaaccagcccttccttcagatctttgctcaaatgccactttct-----tggtaaggctctccgtgacctccctgat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16654211 218 - 220367699 GCTCTGTGCGCACTGTCTGTCCCCTGCCCTCTTCCTCTACCACACTCGCACTTGCTTACTCTGCTCTAGGAATA---TTGACCTCCTTGCTTTTCCTCTAAAAGTGCCAAGGCCATTCCTTCTCCCTAGGCTTTGTTCT-TCTGCTT--------------------------------GGCTTAACCAGCCCTTCCTTCAGATCTTTGCTCAAATGCCACTTTCT-----TGGTAAGGCTCTCCGTGACCTCCCTGAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82453974 218 + 85787240 gctctgtgcgcaccgtctgtcccctgccctcttcctctgccacactcccacttgcttactctgctctaggaata---ttgacctccttgcttttcctctaaaagtgccaaggcctttccttctcgctaggctttgttct-tctgctt--------------------------------ggcttaaccagcccttccttcagatctttgctcaaatgccactttct-----tggtaaggctctctgtgacctccctgat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14134576 215 - 49578535 gctc--tgcacactgtctgtcccctcccctcttcgtcggccagtctcccacctgcttactctgctccaggcata---ctgacctccgtgcttttcctctaaaagcaccaaggccgctccctc-ctggaggttttgctcc-tctgctt--------------------------------ggcttagccagcctttccttcagatctttgctcaaatgccactttcc-----tggaaaggccctccgtggccttctgatt i calJac3.chr19 C 0 C 0 s mm10.chr1 178724161 231 + 195471971 TCTCTCTGTGT----TCTCTGCCCCACCCTCCTTC----CCAAGCTCCCTCTGGCTTGTGCTTGCTTGGGCACGAACCTGGCTCCCTGG----------GGAAGTACCCATG--GGGCCCTTATCCTAAGCTTTGTTCT-ATCGCTTCCTACTGTGCCTTCCCTTGTGTCTGGGGGTGCAGCTTCCCCAGCCTAT------GATCTCTATGCAAATTCTACTTCTCTGTGATGGTGCAGCCCTAC-TGGCCTTCCAGTT i mm10.chr1 C 0 C 0 e canFam3.chr7 36301697 323 + 80974532 I a score=802242.000000 s hg38.chr1_KI270759v1_alt 126396 248 + 425601 taaaattacaataa-tccca-cctgtgcacccctccctctcGCGTGgtacctgctacattaggaatatttgct---gaatgaat------------gaatCTCAGAC-AAATGGGAGATGGGCGGCTAAGTCTCCAGATTGTCCTGCATTGAAGTGCTTGGAGAAGTTTGCGAATTTTCCCACTCAGTTCAAACCACATGCTCAGGAATTAAAGTGTTCTTTCAGCTTTCAGATGTTTTC----GGGGGA-TAGCATTG-TAACAAAGCATG------ s panTro4.chr1 224877351 247 + 228333871 taaaattacaataa-tccca-cctgcgcacccctccctctcGCGTGGTACCTGCTACATTATGAATATTTGCT---GAATGAAT------------GAATCTCAGAC-AAATGGGAGACGGGCGGCTAAGTCTCCACATTGACCTGCATTGAAGTGCTTGGAGAAGTTTGCGAATTTTCCCACTC-TTTCAAACCACATGCTCAGGAATTAAAGTGTTCTTTTAGCTTTCAGATGTTTTG----GGGGGA-TAGCATTG-TAACAAAGCATG------ i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226233749 248 - 229942017 taaaattacaacaa-tccca-cctgcacacccctccctctcGCGTGGTACCTGCTACATTAGGACTATTTGCT---GAATGAAT------------GAATCTCAGAC-AAATGGGAGATGGGTGGCTAAGTCTCCAGATTGTCCTGCATTGAAGTGCTTGGAGAAGTTTGCATATTTTCCCACTCAGTTCAAACCACATGCTCAGGAATTAAAGTGTTCTTTTAGCTTTCGGATGTTTTG----CGGGGA-TAGCATTG-TAACAAAACATG------ i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140126913 252 - 143122389 taaaattacaataa-tccca-cctgcgcacccctccttctcACGTGGTACCTGCTATGCTAGGAATGTTTGCT---GAACGAAT------------GAATCTTAGAC-AAATGGGAGATGGGCAGCTAAGTCTCCAGATTGTCCTGCATCGAAGTGCTTGGAGAAGTTTGCGTATTTTCCCACTCAGTTCAAACCACATGCTCAGGAATT-AAGTGTTCTTTTAGCTTTCAGATGTTTTGGGGAGGGGGA-TAGCATTGTTAACAAAGCAAG------ i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16843228 248 - 229590362 tagaattacaataa-tccca-cctgcgcacccctccctcccacatggcacctgctacattaggaatatttgtt---gaatgaat------------gaatCTCAGAC-AAATGGGAGATGGGCAGATAAGTTTCCAGACTGTCCTGCATTGAAGTGCTTGGAGAAGTTTGTATATTTTCCCACTCAGTTCACACCACATGCTCAGGAATTAAAGTGTTCTTTTAGCTTTCAGATGTTTTG----CGGGGA-TAGCCTTG-TAACAAAGCATG------ i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223604009 248 - 227556264 tagaattacaataa-tccca-cctgcgcacccctccctcccacatggcacctgctacattaggaatatttgtt---gaatgaat------------gaatCTCAGAC-AAATGGGAGATGGGCAGATAAGTTTCCAGACTGTCCTGCATTGAAGTGCTTGGAGAAGTTTGTATATTTTCCCACTCAGTTCACACCACATGCTCAGGAATTAAAGTGTTCTTTTAGCTTTCAGATGTTTTG----CGGGGA-TAGCCTTG-TAACAAAGCATG------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16654429 248 - 220367699 TAGAATTACAATAA-TCCCA-CCTGCGCACCCCTCCCTCCCACATGGCACCTGCTACATtaggaatatttgtt---gaatgaat------------gaatctcagaC-AAATGGGAGATGGGCAGATAAGTTTCCAGACTGTCCTGCATTGAAGTGCTTGGAGAAGTTTGTATATTTTCCCACTCAGTTCATGCCACATGCTCAGGAATTAAAGTGTTCTTTTGGCTTTCAGATGTTTTG----CGGGGA-TAGCCTTG-TAACAAAGCATG------ i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82454192 248 + 85787240 tagaattacaataa-tccca-cctgcgcacccctccctcccacatggcacctgctacattaggaatatttgtt---gaatgaat------------gaatCTCAGAC-AAATGGGAGATGGGCAGATAAGTTTCCAGACTGTCCTGCATTGAAGTGCTTGGAGAAGTTTGTATATTTTCCCACTCAGTTCACACCACATGCTCAGGAATTAAAGTGTTCTTTTAGCTTTCAGATGTTTTG----GGGGGA-TAGCCTTG-TAACAAAGCATG------ i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14134791 249 - 49578535 taaaatgacaacagttccta-ccactgcagcccttcctccCACAAGGTACTTGCTGCATGATGAATGTTTGTT---CAGTGAAT------------GAATCTCAGAC-AATTGGAAGATGGGCAGCTAAGTCTTCAGATTGTCCTGCATTGAAGTGCTGGGAGAAGTTTGCGTATTTTCTGACTCAGCTCAAACCACGTGTTCAGGAATTTAAGTGTTTTTTTAGCTTTCTGATGTTTTG----GGGGGA-TAGCTTTG-TAACAAAGCATG------ i calJac3.chr19 C 0 I 312 s mm10.chr1 178724392 214 + 195471971 TAATATGACAGGTG-TCTCATCCTGTAC-CACCACTCCCACACAAGGC-----CTACAAAGGGAATCATTAATTAAAAACAGTT------------GAATCTTGG-----------------------AGTGTCCAGGTTGTCTTCTGCTGAGGTGCTTAGACA-----------TTCGTCACATAGGTCAAGCTGTGTGTTTCAGAGGTGAATGGTTCCTTTTGCTGTAGGGCACTTTG----GGGGAACTTGCATCT-TCTTCTGGTGTG------ i mm10.chr1 C 0 C 0 s canFam3.chr7 36302020 264 + 80974532 TAAAAGTACAACCA-TCTTG-TCTCTGCATCCCT-CCTCCCACCCAGGACCCGCCATCTTC--AGTATTAGTT---TAATGAGTGGAGGGAAGAAGGAATCTCAGACAAAAAGAGAGATGAGCAGCTAAGTCTCCAGATTTTCCTCCATGGCAGTTCTTTGAGAATTTCACATCTTTCCCCATTCCGTTCAAACCACATGCTCAGGAAGTAAATTACTGCCTTAGTGTTAGGCTGTTCTG----GGGAAA-TAGCACTG-TGACAAAGCTTCCTCTGT i canFam3.chr7 I 323 C 0 a score=1904372.000000 s hg38.chr1_KI270759v1_alt 126644 523 + 425601 A-AAAAAAGCAGTGTTGGGAAATTGAGATTCTTATTACAGTGG-GAGTACCTGGTTGTCATTTCAAGATGAGGATTTGTTAAGGGATGGGACAAGGGATGCTGCCTGGGACAATAAACCAAAGAAAGATTTAAAACAGAGAAAAGAGTTATTAGTTACAGGACTAGCACAAACAAAGTAGggctctccatcttt-ttcctgtctcgctgaaaacccatcttttcttcccttgaataaacttctttgctttctgtccccctgctttgatttattattttaattctatagctgtcttcgtgaagtatgtaaagcatttgggggtaaaatcatgtggaagacattatagaaactaaagatgtgtgatattATGTGGTGTTGGGTAGA-GGCTCAGCG---TGCTTATGAATCACACGGTTGATGAAAACACCAATCTGTCCAGGGCCATTGTCTATCAGCTGTATAAGAAATTGGCTCATTGTTGAGGGTAC-AAGAAGGAGGAATGTAAGGGGGACTGCCGGAATAATTCGGT s panTro4.chr1 224877598 523 + 228333871 A-TAAAAAGTGGTGTTGGGAAATTGAGATTCTTATTACAGTGG-GAGTACCTGCTTGTCACTTCAAGATGAGGATTTGTTAAGGGATGGGACAAGGGATGCTGCCTGGGACAATAAACCAAAGAAAGATTTAAAACAGAGAAAAGAGTTATTAGTTGCAGGACTAGCACAAACAAAGTAGGGCTCTCCATCTTT-TTCCTGTCTCGTTGAAAACCCATCTCTTCCTCCCTTGAATAAACTTCTATGCTTTCTGTCCCCCTGCTTTGATTTATTATTTTAATTCTATAGCTGTCTTCGTGAAGTATGTAAAGCATTTGGGGGTAAAATCATGTGGAAGACATTATAGAAACTAAAGATGTATGATATTATGTGGTGTTGGGTAGA-GGCTCAGCG---TGCTTATGAATCACATGGTCGATGAAAACACCAATCTGTCCAGGGCCATTGTCTATCAGCTGTATAAGAAATTGGCTCATTGTTGAGGGTAC-AAGAAGGAGGAATGTAAGGGGGACTGCCGGAATACTTCGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226233997 523 - 229942017 A-TAAAAAGCAGTGTTGGGAAATTGAGATTCTTATTACAGTGG-GGGTACCTGGTTGTCATTTCAAGATGAGGATTTGTTAAGGGATGGGACAAGGGATGCTGCCTGGCACAATAAACCAAAGAAAGAGTTAAAACAGAGAAAAGAGTTATTAGTTAAAGGACTAGCACAAACAAAGTAGGGCTCTCCATCTTT-TTCCTGTCTCGTTGAAAACCCATCTTTTCCTCCCTTGAATAAACTTCTTTGCTTTCTGTCCCCCTGCTTTGATTTATTATTTTAATTCTATAGCTGTCTTAGTGAAGTATGTAAAGCATTTGGGGGTAAAATCATGTGGAAGACATTATAGAAACTAAAGATGTATGATATTATGTGGTGTTGGGTAGA-GGCTCAGCG---TGCTGATGAATCACACGGTTGATGAAAACACCAATCTGTCCCGGGCCATTGTCTATCAGCTGTATAAGAAATTGGCTCCTTGCTGAGGGTAC-AGGAAGGAGGAATGTAAGGGGGACTGCCGGAATAATTCGGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140127165 520 - 143122389 ATTAAAAAGCAGCGCTGGGAAGTTGAGATTCTTATTACAGTGG-GAGTACCTGGTTGTCATTTCCAGATGAGGATTTATTAAGGGATGGGACAAGGGATGCTGCCTGGGACAATAAACCAAAGAAAGAGTTAAAACAGAGAAAAGAGTTATTAGTTCCAGGACCAGC----ACAAAGTAGGGCTCTCCATCTTT-TTCCTGTCTCGTTGAAAACCCATCTTTTCCTCCCCTGAATAAACTTCTTTGCTTTCTGTCCCCCTGCTTTGATTTATTATTTTAATTCTATAGCTGTCTTAGTGAAGTATGTAAAGCATTTGGGGGTAAAATCATGTGGAAGACATTACGGAAACTAAAGATGTATGATATTATGTGCTGTTGGGTAGA-GGCTCCGCG---TGCTTCTGAATCACACGGTTGATGAAAACACCAGTCAGTCCAGGGCCACTGTCTATCAGCTGTATAAGAAATGGGCTCCTTGTTGAGGGTAC-AGGAAGGAGGAATGTAAGGGGGGCTGCCGGAATAATTCGGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16843476 522 - 229590362 A-TAAAAAGCAGCATTGGGAAATTGAGATTCTTATTACAGTGG-GAGTACCTGGCTGTCATTTCAAGATGAGGATTTGTTGAGGGATGGAATAAGGGATGCTGCCTGCGACAATAAACCAAAGAAAGAGTTAAAACAGAGAAAAGAGTTATTAGTTACAGGACTAGCACAAACAAAGCAGGGCTTTCCATCTTT-TTCCTGTCTCATTGAAAACCCATCTTTTCTTCCCTTGAATAAACTTCCTTGCTTTCTGTCCCCCTGCCTTGATTTATTATTTTAATTCTATAGCTGTCTTAGTGAAGTATGTAAAGTATTTGGGGGTAAAATCATGTGGAAGACATTATAGAAACTAAAGATGTATGATATTATGTGGTGTTGGGTAGA-GGCTCGGCG---AGCTTATGTATCACACGGTTGATGGAAACACCAATCTGTCCAGGGCCGTTGTCTATCAGCTGTATAAGAAACTGGCTCCTTGTTGAGGGTAC-AGGAAGGAGGACCGTAAGGGGAACTG-CGGAATAATTCGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223604257 522 - 227556264 A-TAAAAAGCAGCATTGGGAAATTGAGATTCTTATTACAGTGG-GAGTACCTGGCTGTCATTTCAAGATGAGGATTTGTTGAGGGATGGAATAAGGGATGCTGCCTGCGACAATAAACCAAAGAAAGAGTTAAAACAGAGAAAAGAGTTATTAGTTACAGGACTAGCACAAACAAAGCAGggctttccatcttt-ttcctgtctcattgaaaacccatcttttcttcccttgaataaacttccttgctttctgtccccctgccttgatttattattttaattctatagctgtcttagtgaagtatgtaaagcatttgggggtaaaatcatgtggaagacattatagaaactaaagatgtatgatattATGTGGTGTTGGGTAGA-GGCTCGGCG---AGCTTATGTATCACACGGTTGATGAAAACACCAGTCTGTCCAGGGCCGTTGTCTATCAGCTGTATAAGAAACTGGCTCCTTGTTGAGGGTAC-AGGAAGGAGGACCGTAAGGGGAACTG-CGGAATAATTCGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16654677 523 - 220367699 A-TAAAAAGCAGCATTGGGAAATTGAGATTCTTATTACAGTGG-GAGTACCTGGCTGTCATTTCAAGATGAGGATTTGTTGAGGGATGGAACAAGGGATGCTGCCTGGGACAATAAACCAAAGAAAGAgttaaaacagagaaaagagtTATTAGTTACAGGACTAGCACAAACAAAGCGGGGCTCTCCATCTTT-TTCCTGTCTCGTTGAAAACCCATCTTTTCCTCCCTTGAATcaacttctttgctttctgtccccctgctttgatttattattttaattctatagCTGTCTTAGTGAAGTATGTAAAGCATTTGGGGGTAAAATCATGTGGAAGACATTATAGAAACTAAAGATGTATGATATTATGTGGTGTTGGGTAGA-GGCTCGGCA---TGCTTATGTATCACACGGTTGATGAAAACACCAATCTGTCCTGGGCTGTTGTCTATCAGCTGCGTAAGAAACTGGCTCCTTGTTGAGGGTAC-AGGAAGGAGGAACGTAAGGGGGACTGCCGGAATAATTCGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82454440 522 + 85787240 A-TAAAAAGCAGCATTGGGAAATTGAGATTCTTATTACAGTGG-GAGTACCTGGCTGTCATTTCAAGATGAGGATTTGTTGAGGGATGGAACAAGGGATGCTGCCTGGGACAATAAACCAAAGAAAGAGTTAAAACAGAGAAAAGAGTTATTAGTTACAGGACTAGCATAAACAAAGCAGggctctccatcttt-ttcctgtctcgttgaaaacccatcttttcctcccttgaataaacttctttgctttctgtccccctgctttgatttattattttaattctatagctgtcttagtgaagtatgtaaagcatttgggggtaaaatcatgtggaagacattatagaaactaaagatgtataatattATGTGGTGTTGGGTAGA-GGCTCGGCG---TGCTTGTGTATCACACGGTTGACGAAAACACCAATCTGTCCAGGGCCGTTGTCTATCAGCTGTATAAGAAACTGGCTCCTTGTTGAGGGTAC-AGGAAGGAGGAACATAAGGGGGACTG-TGGAATAATTCGGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14135352 521 - 49578535 a-aaaaaaGCAGTGTTGGGAAATTGAGATTCTTATTAAAGTCA-GAGTATCTGGCTGTCATTTCAAGATGAGGTTTTGTTAAAGGATGGGACAAGGGACGCTGCACGGGACAATAAACCAAAGAAAGAGTTAAAACAGAGGAAAGAGTTATTAGTTACAGGATGAGC--AACCAAGGCAGGGCTCTCCATCTTT-TTCCTGTCTTGCTGAAAACCCATCTTTCCCTCCCTTGAATAAACTTCTTTGCTTTCTGTCCCCCTGCTTTGATTTAGTATTTTAATTCTATAGCTGTCTTAGTGAAATATGCAAAGCATTTGGGGGTAAAACCACGTGGAAGACATTATAGAAATCAAAGATGGATTATGTCCTGTGGTGTGGAGTAGA-GGTTTAGCA---TGCGTGTGAATCGCACTGTTGCTGAAAAGCCCCGTGTGTCCAGGGCCATTGTCTATCAGCTGAATAAGACACTGGCTCCTTGATGAGGGCAC-GGGAAGGAGGAATGTAAGGGGGACCGCCGTCATAATTCGGT i calJac3.chr19 I 312 C 0 s mm10.chr1 178724606 465 + 195471971 ---AAAGAGGCATGTTATGAGCCTGAATGTCTTA-TAAAGTTC-AGTTACTTAACTGT---TCCCATGAGAGGGTGTTGTAAAGGACCAGGGAAGGGATGCATCCTAGGACAATAAGCTCACAGAAGAGTTTCAGTGGCGG-AGGTCTTCTGAGTCACCTGAGCATTGCAGCTGA--TCGCGCTCTCTGTCTTC-CTCCT------------------------------TCAGTAAACCTCCTTGCTTTCTGT-TCCTTGTGCTGATTGATTATTTTAATTCTAAAGCTGTCTTATTGAAGTATGTAAAGCATTTGGGGATAGAATCATGGGGAAGGCATTAGAGAAACTAAAGATGTATTATTCTGCATGGCGCTGGATAGA-GGCTGAGTG---CACTGATAAATGGCATTGTGGAGGGAAACA--GATCCATCCTGGGC------------ACTGTGT-----GTTTGTGCCTTCCCAAGGATGTGGGGAAGCACAAATGACGGGACATCAGGTATGATGCTGTGCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36302284 507 + 80974532 -GAAGAAGGCATCACTGGGAAACTGAGATTCTTATAAAAGCCATGAGTACCTAGTAGTCTTTTCAAGAGGAAGGTTTG-CAAGAGATGGGACAAGTAGCACTGCTTGGGACAA----ACAAACAAAGAGTT-AAGCAGAGAAAAG-------------AGGACGAGTGCA-ATGCAGGAGGGCTCTCCATCTTTCTTCCTGTCTCCTTGCAAACCTGTATTTGCCTTCCTTGAATAAACCCCTTCGCTTTCTGT-CCCCTACTTTGATTTATTATTTTAATTCTCTAGCTGTCCTAGTGAAGTATGTAAAGCATTTGGGGATAAAATCATGTGGAAGACATTATAGAAACTAAAGATGTATTCTGTTATGTGGTATTAGGTAGAGGGTTCAGTGTGCTGCTGATGAATCACATTGTTGACGAAAGCACGAATCTGTCCATGGC-ATTGTCTATCCACTAAATAAGAAAGTGACTCCTCATTGAGGGGAT-GGGGAGGAGGAGTTTAAGGGATACTGTTATAATAATTTGGT i canFam3.chr7 C 0 I 165 a score=352023.000000 s hg38.chr1_KI270759v1_alt 127167 105 + 425601 -------------------------------TAGAATTCGGTAAAACCGGAGCATGGAGAGGTCTGGTTGACATCCCTCCTTTTTATACTGAGAGATGTCCCTGAAG-GTGAGGTTTTTATTTTCTTGCCTCTAAAA s panTro4.chr1 224878121 105 + 228333871 -------------------------------TAGAATTAGGTAAAACCGGAGCATACAGAGGTCTGGTTGACATCCCTCCTTTTTATACTGAGAGATGTCCCTGAAG-GTGAGGTTTTTATTTTCTTGCCTCTAAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226234520 105 - 229942017 -------------------------------TAGAATTAGGTAAAACCGGAGCATAGAGAGGTCTGGTTGACATCCCTACTTTTTGTAGTGACAGATGTCCCTGAAG-GTGAGGTTTTTATTTTCTTGCCTCTAAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140127685 105 - 143122389 -------------------------------TAGAATTAGGTAAAACCGGAGCATGGAGAGGTCTGGTTGACTTCCCTACTTTTTATACTGAGAGATGTCCCTGAAG-GTGAGGCTTTTATTTTCTTGCCTCTAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16843998 105 - 229590362 -------------------------------TAGCATTAGGTGAAACCGGGGCATAGAGAGGTCTGGTTGGCATCCCTGCTTTTTATACTGAGAGATGTCCCTGAAG-GTGAGGTTTTTGTTTCCTTGCCTGTAAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223604779 105 - 227556264 -------------------------------TAGAATTAGGTGAAACCGGGGCATAGAGAGGTCTGGTTGGCATCCCTGCTTTTTATACTGAGAGATGTCCCTGAAG-GTGAGGTTTTTGTTTCCTTGCCTGTAAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655200 105 - 220367699 -------------------------------TAGAATTAGGTGAAACCGGGGCATAGAGAGGTCTGGTTGGCATCCCTGCTTTTTATACTGAGAGATGTCCCTGAAG-GTGAGGTTTTtgtttccttgcctgtaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82454962 105 + 85787240 -------------------------------TAGAATTAGGTGAAACCGGGGCATAGAGAGGTCTGGTTGGCATCCCTACTTTTTATACTGAGAGATGTCCCTGAAG-GTGAGGTTTTTGTTTTCTTGCCTGTAAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14135873 105 - 49578535 -------------------------------TAGAATTCGGTAAAACTGGAGCATAAAGAGGCCTGATTGACATCCCTACTTTTTATACTGAGAGATGTCCCTGATG-GTGAGGTTTCTATTTTCTTACCTCTAAAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178725071 89 + 195471971 -------------------------------TTGAAATAAATCACATGGAGTCACAGAGAGACCTGTTTGGTATCTCTGCTTTCTCTTCTGTGA---------------TGGCATTCACAATTTCTCTCCTAAAA-- i mm10.chr1 C 0 I 38 s canFam3.chr7 36302956 136 + 80974532 taaaatccttaataaaTAATAATAATTTGGTGAGAAACAGGTAGAACTGAGGTGTAAATAGACCTGGTCAAAGTCTCTGCTTTTTACATCG-CAGATGTCCCCCAAGAGTAGGATTTTTGTTTTCTTGCCTCTAAAG i canFam3.chr7 I 165 C 0 a score=100471.000000 s hg38.chr1_KI270759v1_alt 127272 30 + 425601 GGGAAATAATGAATGTTTCTATTTCTTCTG s panTro4.chr1 224878226 30 + 228333871 GGGAAATAATGAATGTTTCTATTTCTTCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226234625 30 - 229942017 GGGAAATAATGAATGTTTCTATTTCTTCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140127790 26 - 143122389 GGAAAATAATGAATGTTTGAA----TTCCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844103 30 - 229590362 GGAAAATAATGAATGTTTCTATTTCttctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223604884 30 - 227556264 GGAAAATAATGAATGTTTCTATTTCTTCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655305 30 - 220367699 ggaaaataatgaatgttTCTACTTCTTCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82455067 30 + 85787240 GGAAAATAATGAATGTTTCTATTTCTTCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14135978 30 - 49578535 GGGAAATAATGAATGTTTCTATGTCTTCTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36303092 30 + 80974532 TGGAAATAATGAATTTTTCTTTTTCTTCTG i canFam3.chr7 C 0 I 10 e mm10.chr1 178725160 38 + 195471971 I a score=86308.000000 s hg38.chr1_KI270759v1_alt 127302 35 + 425601 TCCTATT---A--------------------------------CTCTGTGATGAATGCTTCTTTTATTTT s panTro4.chr1 224878256 35 + 228333871 TCCTATT---A--------------------------------CTCTGTGATGAATGTTTCTCTTATTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226234655 35 - 229942017 TCCTATT---A--------------------------------CTCTGTGATGAATGTTTCTTTTATTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140127816 38 - 143122389 CCACATTGGAG--------------------------------CTCTGTGATGAATGTTTCTTTTATTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844133 35 - 229590362 tcctatt---a--------------------------------ctctgtgacaaatgtttcttttatttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223604914 35 - 227556264 TCCTATT---A--------------------------------CTCTGTGACAAATGTTTCTTTTATTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655335 35 - 220367699 TCCTATT---A--------------------------------TTCTGTgacaaatgtttcttttatttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82455097 35 + 85787240 TCCTATT---A--------------------------------CTCTGTGATGAATGTTTCTTTTATTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14136008 67 - 49578535 TCCTGTG---AGGAATGTTTCTTTTATTTTTCTTCTGTCCTGTGTCTGTGATGAATGTTTCTTTTATTTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178725160 38 + 195471971 I e canFam3.chr7 36303122 10 + 80974532 I a score=26785.000000 s hg38.chr1_KI270759v1_alt 127337 6 + 425601 TAT---------------------CTG s panTro4.chr1 224878291 6 + 228333871 TAT---------------------CTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226234690 6 - 229942017 TAT---------------------CTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140127854 27 - 143122389 TATCTGATTTCAtaagaacagaaactg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844168 27 - 229590362 tatctgatttcacaagaacagaaactg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223604949 27 - 227556264 TATCTGATTTCACAagaacagaaactg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655370 27 - 220367699 tatctgatttcacaagaacagaaactg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82455132 27 + 85787240 TATCTGATTTCACAagaatagaaactg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14136075 27 - 49578535 TATCTGATTTCACAAGAACAGAAGCTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36303132 6 + 80974532 ---------------------TAACTG i canFam3.chr7 I 10 C 0 e mm10.chr1 178725160 38 + 195471971 I a score=111498.000000 s hg38.chr1_KI270759v1_alt 127343 37 + 425601 AGTCTAACT-----------CCCTCCACCATACTTAGCATCATGCTTG s panTro4.chr1 224878297 38 + 228333871 AGTCTAACT----------CCCCTCCACCATACTTAGCATCATGCCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226234696 38 - 229942017 AGTCTAACT----------CCCCTCCACCATACTTAGCATCATGCCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140127881 38 - 143122389 agtctaatt----------cccctccaccatacttagcatcatgcgtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844195 38 - 229590362 agtctaatt----------cccctccgccatactgagcatcatgcctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223604976 38 - 227556264 agtctaatt----------cccctccgccatactgagcatcatgcctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655397 38 - 220367699 AGTCTAATT----------CCCCTCCGCCATACTGAGCATCATGCCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82455159 38 + 85787240 agtctaatt----------cccctccaccatactgagcatcatgcctg i chlSab2.chr25 C 0 I 13 s calJac3.chr19 14136102 37 - 49578535 AGTCTGTTT-----------CCCTCTACCATACTTAGCATCATGCCTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178725198 30 + 195471971 ----AGACT----------CACTTCCACC--ACTCAG-ATGGTGCTC- i mm10.chr1 I 38 C 0 s canFam3.chr7 36303138 47 + 80974532 TGTCTAACCCCCACCCCACCCCCTACACTGCACTTGGCACCGTGCCT- i canFam3.chr7 C 0 C 0 a score=5833.000000 s hg38.chr1_KI270759v1_alt 127380 9 + 425601 CATCATATC s panTro4.chr1 224878335 9 + 228333871 CATCATATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226234734 9 - 229942017 CATCATATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140127919 9 - 143122389 catcgtatc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844233 5 - 229590362 ----gtacc i rheMac3.chr1 C 0 I 8 s macFas5.chr1 223605014 5 - 227556264 ----gtacc i macFas5.chr1 C 0 I 8 s papAnu2.chr1 16655435 5 - 220367699 ----GTACC i papAnu2.chr1 C 0 I 8 s calJac3.chr19 14136139 7 - 49578535 --TTGCATA i calJac3.chr19 C 0 I 1 s mm10.chr1 178725228 9 + 195471971 TGTGATAGC i mm10.chr1 C 0 C 0 s canFam3.chr7 36303185 6 + 80974532 ---CATACA i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82455197 13 + 85787240 I a score=327323.000000 s hg38.chr1_KI270759v1_alt 127389 88 + 425601 --------CATTAATAAATGGATGTTGAAAGAATGAATCAACCATGCTTGAAAACTTAGATCTCTCTTGCTTTTCAAGAGACTCAAATATTTAAAA s panTro4.chr1 224878344 88 + 228333871 --------CATTAATAAATGGATGTTGAAAGAATGAATCAACCATGCTTGAAAACTTAGATCTCTCTTGCTTTTCAAGAGACTCAAATATTTAAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226234743 88 - 229942017 --------CATTAATAAATGGATGTTGAAAGAATGAATCAACCATGCTTGAAAACTTAGATCTCTCTTGCTTTTCAAGAGACTCAAATATTTAAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140127928 88 - 143122389 --------cattaacaaatggatgttgaaagaatgaatCAACCATGCTTGAAAACTTAGATCTCTCTTGCTTTTCGAGAGAGTCAAATATTTAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844246 88 - 229590362 --------gattaataaatggatgttgaaagaatgaatCAACCATGATTGAAAACTTAGATCTCTCTTGCTTTTCAAGAGAGTCAAATATTTAAAA i rheMac3.chr1 I 8 C 0 s macFas5.chr1 223605027 88 - 227556264 --------gattaataaatggatgttgaaagaatgaatCAACCATGATTGAAAACTTAGATCTCTCTTGCTTTTCAAGAGAGTCAAATATTTAAAA i macFas5.chr1 I 8 C 0 s papAnu2.chr1 16655448 88 - 220367699 --------GATTAATAAATGgatgttgaaagaatgaatcaaCCATGATTGAAAACTTAGATCTCTCTTGCTTTTCAAGAgagtcaaatatttaaaa i papAnu2.chr1 I 8 C 0 s chlSab2.chr25 82455210 88 + 85787240 --------gattaataaatggatgttgaaagaatgaatCAACCATGATTGAAAACTTAGATCTCTCTTGCTTTTCAAGAGAGTCAAATATTTAAAA i chlSab2.chr25 I 13 C 0 s calJac3.chr19 14136147 87 - 49578535 ---------ATCAATATATGGATGTTGAAAGCATGAATCAACCATACTGGAAAACTTAGATCTCTCTTGCTTTTCAAGAGAGTCAAATACTTAAAA i calJac3.chr19 I 1 C 0 s mm10.chr1 178725237 85 + 195471971 -----------CAGAGGATCAATGTGAAAAGAATGCACCATGAGTGCTTGGAAACATAGGTCTGTCTTGCTTCTCAGAAGAATAGAATATGTAAAa i mm10.chr1 C 0 C 0 s canFam3.chr7 36303191 89 + 80974532 CACTAGGAGCTCAGGAAGTGAATGTTGAGACAGGGAGCCAACCATGCTTGAAAACTCGGACCTGTCCTGCTTCTCAA-------AAAGAGTGAAAA i canFam3.chr7 C 0 C 0 a score=328985.000000 s hg38.chr1_KI270759v1_alt 127477 124 + 425601 GCAGCTATGGAgccgtgtgcggcggctcccgcctgtaatcccagcactttgggaggccgaggcaggtggatcacaaggtcaggagttcaaaaccagcctggccaacatagtgaagccccatctc s panTro4.chr1 224878432 124 + 228333871 GAAGCTGTGGAgctgtgtgcggcggctcccgcctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggagttcaaaaccagcctggccaacacagtgaagccccatctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226234831 124 - 229942017 GAAGCTATGGagctgtgtgcggcagctcccgcctgtgatcccagcacttttggaggccggggcgggtggatcacaaggtcaggagttcaaaaccagcctggccaacatagtgaagccccatctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140128016 124 - 143122389 GAAGCTATGGAgctgtgcgcggcggctcccgcctgtaatcccagcactgtgggaggccgaggtgggtggatcacaagcttgggagttcaagaccagcctggccaacatagtgaagccccatctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844334 124 - 229590362 GAAGCCATGGAgccatgtgcggctgctcatgcctgtcatcccagcactttgggaggccgaggtgggtggatcacaaggtcgggagttcaaggccagcctggccaacatagtgaagccccatgtc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223605115 124 - 227556264 GAAGCCATGGAgccatgtgcggctgctcatgcctgtcatcccagcactttgggaggccgaggtgggtggatcacaaggtcgggagttcaaggccagcctggccaacatagtgaagccccatctc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655536 124 - 220367699 gaagccATGGAGCCATGTGCGgctgctcatgcctgtcatcccagcactttgggaggccgaggtgggtggatcacaaggtcgggagttcaaggccagcctggccaacatagtgaagccccatctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82455298 124 + 85787240 GAAGCCATGGAgccatgtgcggctgctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagttcaaggccagcctggccaacatagtgaagccccatctc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14136234 123 - 49578535 GAAGCTATGGggccaggcgtgatgactcacacctgtaatcccagcattttggaaggcagaggtggacagatcac-aggtgaggagttcaaggccagcctggccaacatagtgaaaccccagctc i calJac3.chr19 C 0 C 0 s mm10.chr1 178725322 28 + 195471971 acaacaa--------------------------------------------------------------------------------caacaaca-----------acagcaaAACCC-----T i mm10.chr1 C 0 C 0 e canFam3.chr7 36303280 0 + 80974532 C a score=17704.000000 s hg38.chr1_KI270759v1_alt 127601 12 + 425601 tactaaaa----a--------------------------------aaa s panTro4.chr1 224878556 16 + 228333871 tactaaaagtcca--------------------------------aaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226234955 16 - 229942017 tactaaaagtcca--------------------------------aaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140128140 16 - 143122389 tactaaaagtcca--------------------------------aaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844458 48 - 229590362 tactaaaagtccccaaaaaaaaattaaccgggcatggtgttccccaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223605239 18 - 227556264 tactaaaagtcccca------------------------------aaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655660 19 - 220367699 tactaaaagtccaaaa-----------------------------aaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82455422 24 + 85787240 tactaaaagtccaaaaaaaaa------------------------aaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14136357 10 - 49578535 tactaaa--------------------------------------aaa i calJac3.chr19 C 0 C 0 s mm10.chr1 178725350 14 + 195471971 CAAGAAAACTC----------------------------------AAA i mm10.chr1 C 0 C 0 s canFam3.chr7 36303280 12 + 80974532 TACTTAAAG------------------------------------AAA i canFam3.chr7 C 0 C 0 a score=293886.000000 s hg38.chr1_KI270759v1_alt 127613 104 + 425601 a---aaaaaaattaacagggcgtggtggtgggcacctgtagccccagctacttggaaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgag s panTro4.chr1 224878572 104 + 228333871 a---aaaaaaattaacagggcgtggtggtgggcacctgtagcgccagctacttggaaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226234971 107 - 229942017 aaataaataaattaacagggcacggtggtaggcacctgtagccccagctacttggaaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140128156 105 - 143122389 aa--aaaaaaattaaccaggcgtggtagtgggcatctgtagccccagctacttggaaggctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844506 104 - 229590362 a---aaaaaaattaaccgggcatggtgttgggcacctgtagccccagctacttggaagattgaggcaggagaatcccttgaacccaggaggtggaggttgcagtgag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223605257 104 - 227556264 a---aaaaaaattaaccgggcatggtgttgggcacctgtagccccagctacttggaagattgaggcaggagaatcccttgaacccaggaggtggaggttgcagtgag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655679 104 - 220367699 a---aaaaaaattaactgggcatggtgttgggcacctgtagccccagctacttggaagattgaggcaggagaatcccttgaacccaggaggtggaggttgcagtgag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82455446 104 + 85787240 a---aaaaaaattaaccgggcgtggtgttgggcacctgtagccccggctacttggaaggttgaggcaggagaatcccttgaacccaggaggtggaggttgcagtgag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14136367 104 - 49578535 a---aaaaaaattagccaggtgtggtggtgggcacctgtagtcccagctacttgggaggctgaggcagcagaattgcttgaacctgggaggcagaagttgcagtgag i calJac3.chr19 C 0 C 0 s mm10.chr1 178725364 51 + 195471971 A---AACAAAACAAAC-----------------------AACAACAACAAC------------------AAAAT--CTCAAACCTA----------ATTTATGTGGG i mm10.chr1 C 0 C 0 e canFam3.chr7 36303292 0 + 80974532 C a score=119961.000000 s hg38.chr1_KI270759v1_alt 127717 46 + 425601 ccgagattgcgccactgccctccagcctgggtgacacagcaagact s panTro4.chr1 224878676 46 + 228333871 ccgagattgcaccactgccctccagcctgggtgacacagcaagact i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226235078 46 - 229942017 ccgagattgcaccactgccctccagcctgggtgacacagcaagact i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140128261 46 - 143122389 ccgagattgcgccactgccttccagcctgggcgacacagcaagact i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844610 46 - 229590362 ccgagatcacaccactgcactccagcctgggcgacacagtaagact i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223605361 46 - 227556264 ccgagatcacaccactgcactccagcctgggcgacacagtaagact i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655783 46 - 220367699 ccgagatcacaccactgcactccagcctgggcgacacagtaagact i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82455550 46 + 85787240 ccgagatcacactactgtgctccagcctgggcgacacagtaagact i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14136471 46 - 49578535 cagagattgtgccactgcactccagcctgggcaacacagtgagact i calJac3.chr19 C 0 C 0 s mm10.chr1 178725415 27 + 195471971 CCTAA-----------GCCCTCGACTGTGGGA--------AAGACT i mm10.chr1 C 0 C 0 s canFam3.chr7 36303292 6 + 80974532 CTGAGA---------------------------------------- i canFam3.chr7 C 0 C 0 a score=297551.000000 s hg38.chr1_KI270759v1_alt 127763 112 + 425601 c-------tgtctcaaaaaaaaaaaaagaag------aagaagaagaagaagaagtaagaagTTATGGGATTGTGCTTGCAAGCAGCACAGTTTATTGTGTAGCATCAGAGTTTTCATCATTCCA s panTro4.chr1 224878722 107 + 228333871 c-------tgtctcaaaaaaaaaaaa-----------aaaaaaaagaagaagaaGTAAGAAGTTATGGGATTGTGCTTGCAAGCAGCACAGTTTATTGTGTAGCATCAGAGTTTTCATCATTCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226235124 99 - 229942017 c-------tgtctcaaaa-------------------aaaaagaagaggaagaaGTAAGAAGTTATGGGATTGTGCTTGCAAGCAGCACAATTTATTGTGTAGCATCAGAGTTTTCGTCATTCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140128307 110 - 143122389 c-------tgtctcaaaaaaaaaaaaaga--------aaagaaaagaaaaaGAAGTAAGAAGTTATAGGATTGTGCCTGCAAGCAGCACAATTTATTGTGTAGCATCCGAGTTTTCATCATTCCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844656 112 - 229590362 ttggactttgtctcaaaaaaaaaa-------------aagaagaagaagaagaaGTAAGAAGTTATGGGATTGTGCTTGCAAGCAGCACAATTTATTGTGTAGCTTCAGAGTTTTCATCATTCCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223605407 112 - 227556264 ctggactttgtctcaaaaaaaaaa-------------aagaagaagaagaagaaGTAAGAAGTTATGGGATTGTGCTTGCAAGCAGCACAATTTATTGTGTAGCTTCAGAGTTTTCATCATTCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655829 125 - 220367699 ctggactttgtctcaaaaaaaaaaaaaaaaaaaaaagaagaagaagaagaagaagtaagaagTTATGGGATTGTGCTTGCAAGCAGCACAATTTATTGTGTAGCTTCAGAGTTTTCATCATTCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82455596 118 + 85787240 ctggactttgtctcaaaaaaaaaaaaaaaa-------aagaagaagaagaaGAAGTAAGAAGTTATGGGATTGTGCTTGCAAGCAGCACAATTTATTGTGTAGCTTCAGAGTTTTCATCATTCCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14136517 98 - 49578535 c-------tgtctcaaaaaaaca--------------aaacaaaacaaaacG------GAAGCTATGGGATTGTGCTTTCGAGCAGCACAATTTATTGTATAGCATCAGAGTTTTCATCATTCCA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36303298 74 + 80974532 -----------CTTAAAA-------------------A---------------------AAGGTATGGGAGTGTCCTTGAAAATAGCCAAATTTATTCTGTTCTCTCAGATTTCCCATCATTCCG i canFam3.chr7 C 0 C 0 e mm10.chr1 178725442 0 + 195471971 C a score=2742065.000000 s hg38.chr1_KI270759v1_alt 127875 749 + 425601 ------AGTATTAGTGATAAAAATAATT-------CTGAAGGATAAATGG---CATATTTTCCATTGTTGATTTCAACACAGTTAGACTCAGCAGTGCACCATTTCTGATAATCATCTATCATTTTACTCAGCATATGCAAAAAATGATCTTAGCATCACATGGCAATTAGATGC-TTTTTTTTCTGGCACCTGGTGTGCTTGTTCATGAAGTGCACTGAGATTCCGGAAATATAATTTCAAAAGCCTAGAAATAATGGCCCATGTCATTTTCTTGGCATTCTTCAAAACCAAAGCCTTAAGAGTCCATGGTTTGT-CCTTTTAAACCCCAGCAACGGAAAGAAAGGGCCTTGGCAGTGACAAAGAAAGAGAAATTCTCTTGGGGGTCTGTAGTGAAAAGGGATGTAATCAGTACCAGGCAAGCCACTTTGATTTTTTTTTTAAAAAATGAACAAATATAAACCATTACTCAAAATTTCTTTCCAGTCTTTTTGGTGCTTCAG-AATATAAATGTGGCTCATTTTTCTCTAATAAGTTTCCATTTATTATCATAGTCATCTCTTCAGTGC--------------TCAATC-AAAGTGGCAAGGTTGTATTTGT-GGAGAAAACAGAA--------------TATTTTGTAACATGGCTATCCTGAATTTTAGAGGCACTT-------ACTAGGGATGGAAAAA-------CT-----GGTCTGAAGTTCTTAGGC--ATACTCTTACCACCTAAAAGTGTTCAGCGATAAAAATAATTGCTTTGTTTTTACCTTTGAGGAACT-CCAAGTATCAGGTTAA s panTro4.chr1 224878829 748 + 228333871 ------AGTATTAGTGATAAAAATAATT-------CTGAAGGATAAATGG---CATATTTTCCATTGTTGATTTCAACACAGTTAGACTCAGCAGTGCACCATTTCTGATAATCATCTATCATTTTACTCAGCATATGCAAAAAATGATCTTAGCATCACATGGTAATTAGATGC-TTTTTTTTCTGGCACCTGGTGTGCTTGTTCATGAAGTGCACTGAGATTCAGGAAATATAATTTCAAAAGCCTAGAAATAATGGCCCATGTCGTTTTCTTGGCATTCTTCAAAACCAAAGCCTTAAAAGTCCATGGTTTGT-CCTTTTAAACCCCAGCAACAGAAAGAAAGGGCCTTGGCAGTGACAAAGAAAGAGAAATTCTCTTGGGGGTCTGCAGTGAAAAGGGATGTAATCAGTACCAGGCAAGCCACTTTGA-ATTTTTCTTAAAAAATGAACAAATATAAACCATTACTCAAAATTTCTTTCCAGTCTTTTTGGTGCTTCAG-AATATAAATGTGGCTCATTTTTCTCTAATAAGTTTCCATTTATTATCATAGTCATCTCTTCAGTGC--------------TCAATC-AAAGTGGCAAGGTTGTATTTGT-GGAGAAAACAGAA--------------TATTTTTTAACATGGCTATCCTGAATTTTAGAGGCACTT-------ACTAGGGATGAAAAAA-------CT-----GGTCTGAAGTTCTTAGGC--ATACTCTTACCACCTAAAAGTGTTTAGCAATAAAAATAATACCATTGTGTTTACCTTTGAGGAACT-CCAAGTATCAGGTTAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226235223 739 - 229942017 ------AGTATTAGTGATAAAAATAATT-------CTGAAGGATAAATGG---CATATTTTCCATTGTTGATTTCAACACGGTTAGACTCAGCAGTGCACTATTTCTGATAATCATCTATCATTTTACTCAGCGTATGCAAAAAATGATCTTAGCATCACATGGTAATTAGATGC-TTTTTTTTCTGGCACCTGGTGTGCTTGTTCATGAAGTGCACTGAAATGCGGGAAATATAATTTCAAAAGCCTAGAAATAATGGCCCATGTCATTTTCTTGGCATTCTTCAAAACCAAAGCCTTAAGAGTCCATGGTTTGT-CCTTTTAAACCCCAGCAACGGAAAGAAAGGGCCTTGGCAGTGACAAAGAAAGAGAAATTCTCTTGGGGGTCTGCAGTGAAAAGGGATGTAATCAGTACCAGGCAAGCCACTTTGAATTTTTTTTT--TAAATGAACAAATATAAACCATTAATCAAAAATTCTTTCCAGTCTTTTTGGTGCTTCAG-AATATAAATGTGGCTCATTTTTCTCTAATAAGTTTCCATTTATTATCATAGTCATCTCTTCAGTGC------------------TC-AAAGTGGCAAGGTTGTATTTGT-GGAGAAAACAGAA--------------TATTTTTTAACATGGCTATCCTGAATTTTAGAGGCACTT-------ACTAGGGATGAAAAAA-------CT-----GGTCTGAAGTTCTTAGGC--ATACTCTTACCACCTAAAAGTGTTTAGCAATAAAAATAATACCTTTGTTTTGACCTTTGAGGAA-----AGGTATCAGGTTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140128417 741 - 143122389 ------AGTATTAGTGATAAAAATAATT-------CTGAAGGATAAATGG---CATATTTGCCATTGTTGATTTCAACAC----AGACTCAGCAGTGCACTATTTCTGATAATCATCTATCATTTTACTCAGCATATGCAAAAAATGATCTTAGCATCACATGGTAATTAGATGC-TTTTTTTTCTGGCACCTGGTGTGCTTGTTCATGAAGTGCACTGAAATTCGGGAAATATAATTTCAAAAGCCTAGAAATAATGGCCCATGTCATTTTCCTGGCATTCTTCAAAACCAAAGCCTTAAGAGTCCACGGTTTGT-CCTTTTAAACCCCAGCAACGGAAAGAAAGGGCCTTGGCAGTGACAAAGAAAGAGAAATTCTCTTGGGGGTCTGCAGTGAAAAGGGATGTAATCAGTACCAGGCAAGCCACTTTGAATTTTTTTTTTAAAAACGAACAAATATAAACCATTACTCAAAATTTCTTTCCAGTCTTTTTGGTGCTTCAG-AATATAAATGTGGCTCATTTTTCTCTAATAAATTTCCATTTATTATCATAGTCATCTCTTTGGTGC------------------TC-AAAGTGGCAAGGTGGTATTTGT-GGAGAAAACAGAA--------------TATTTTTTAACATGGCTGTCCTGAATTTTAGAGGCACTT-------ACTCGGGATGAAAAAA-------CT-----GGTCTGAAGTTCTTATGC--ATACTCTTACCATCTAAAGGTGTTTAACAATAAAAATAATACCTTTGTTTTGACCTTTGAGGAACT-CCAAGTATAGGGTTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16844768 761 - 229590362 ------AGTATTAGTGATAAAAATAATT-------CTGAAGGATAAATGG---CATATTTTCCATTGTTGATTTCAACACGGTTAGACTCAGCAGTGCACTATTTCTGATAATCATCTATCATTTTACTCAGCATATGC-AAAAATGATCTTAGCATCACATTGTAATTAGATGC-TTTTTTTTCTGGCACCTGGTGTGCTTGTTCATGAAGTGCACTGAAATTCGGGAAATAGAATTTCAAGAGCCTAGAAATAATAGCCCATGTCATTTTCTTGGCATTCTTAAAAACCAAAGCCTTAAGAGTCCATGGCTTGT-CCTTTTAAACCCCAGCAATAGAAAGAAAGGGCCTTGGCAGTGACAAAGAGAGAGAAATTCTCTTGGGGGTCTGCAGTGAAAAGGGATGTAATCAGTACCAGGCAAGCCACTTTGAA--TTTTTTTAAAAAGTGAACAAATATAAACCGTTACTCAAAATTTCTTTCCAGTCTTTTTGGTGCTTCAG-AATATAAATGTGGCTCATTTTTCTCTAATAAATTTCCATTTATTATCATAGTCATCTCTTCGGCGCTCAATCTTTGGTGCTCAATC-AAAGTGGCAAGGTGGTATTTGT-GTAGAAAACAGAT--------------TATTTTTTAACATGGCTATCCTGAATTTTAGAGGCACTT-------ACTAGGGATGAAAAAA-------CT-----GATCTGAAGTTCTTATGC--ATACTCTTACCACCTAAAAGTGTTTAACAATAAAAATAATACCTTTGTTTCGACCTTTGAGGAACTCCCAAGTATCAGGTTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223605519 761 - 227556264 ------AGTATTAGTGATAAAAATAATT-------CTGAAGGATAAATGG---CATATTTTCCATTGTTGATTTCAACACGGTTAGACTCAGCAGTGCACTATTTCTGATAATCATCTATCATTTTACTCAGCATATGC-AAAAATGATCTTAGCATCACATTGTAATTAGATGC-TTTTTTTTCTGGCACCTGGTGTGCTTGTTCATGAAGTGCACTGAAATTCGGGAAATAGAATTTCAAGAGCCTAGAAATAATAGCCTATGTCATTTTCTTGGCATTCTTAAAAACCAAAGCCTTAAGAGTCCATGGCTTGT-CCTTTTAAACCCCAGCAATAGAAAGAAAGGGCCTTGGCAGTGACAAAGAGAGAGAAATTCTCTTGGGGGTCTGCAGTGAAAAGGGATGTAATCAGTACCAGGCAAGCCACTTTGAA--TTTTTTTAAAAAGTGAACAAATATAAACCGTTACTCAAAATTTCTTTCCAGTCTTTTTGGTGCTTCAG-AATATAAATGTGGCTCATTTTTCTCTAATAAATTTCCATTTATTATCATAGTCATCTCTTCGGCGCTCAATCTTTGGTGCTCAATC-AAAGTGGCAAGGTGGTATTTGT-GTAGAAAACAGAA--------------TATTTTTTAACATGGCTATCCTGAATTTTAGAGGCACTT-------ACTAGGGATGAAAAAA-------CT-----GATCTGAAGTTCTTATGC--ATACTCTTACCACCTAAAAGTGTTTAACAATAAAAATAATACCTTTGTTTCGACCTTTGAGGAACTCCCAAGTATCAGGTTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16655954 761 - 220367699 ------AGTATTagtgataaaaataatt-------ctgaaggaTAAATGG---CATATTTTCCATTGTTGATTTCAACACGGTTAGACTCAGCAGTGCACTATTTCTGATAATCATCTATCATTTTACTCAGCATATGC-AAAAATGATCTTAGCATCACATTGTAATTAGATGC-ttttttttCTGGCACCTGGTGTGCTTGTTCATGAAGTGCACTGAAATTCGGGAAATAGAATTTCAAGAGCCTAGAAATAATAGCCCATGTCATTTTCTTGGCATTCTTAAAAACCAAAGCCTTAAGAGTCCATGGCTTGT-CCTTTTAAACCCCAGCAATAGAAAGAAAGGGCCTTGGCAGtgacaaagagagagaaattatctTGGGGGTCTGCAGTGAAAAGGGATGTAATCAGTACCAGGCAAGccactttgaa--tttttttaaaaagtgaacaaatatAAACCGTTACTCaaaatttctttccagtctttttgGTGCTTCAG-AATATAAATGTGGCTCatttttctctaataaatttccatttattatCATAGTCATCTCTTCGGCGCTCAATCTTTGGTGCTCAATC-AAAGTGGCAAGGTGGTATTtgt-ggagaaaacagaa--------------tattttttaacatgactATCCTGAATTTTAGAGGCACTT-------ACTAGGGATGAAAAAA-------CT-----GATCTGAAGTTCTTATGC--ATACTCTTACCACCTAAAAGtgtttaacaataaaaataataccttcaTTTCGACCTTTGAGGAACTCCCAAGTATCAGGTTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82455714 761 + 85787240 ------AGTATTAGTGATAAAAATAATT-------CTGAAGGATAAATGG---CATATTTTCCATTGTTGATTTCAACACGGTTAGACTCAGCAGTGCACTATTTCTGATAATCATCTATCATTTTACTCAGCATATGC-AAAAATGATCTTAGCATCACATTGTAATTAGATGC-TTTTTTTTCTGGCACCTGGTGTGCTTGTTCATGAAGTGCACAGAAATTCGGGAAATATAATTTCAAGAGCCTAGAAATAATAGCCCATGTCATTTTCTTGGCATTCTTCAAAACCAAAGCCTTAAGAGTCCATGGTTTGT-CCTTTTAAACCCCAGCAATGGAAAGAAAGGGCCTTGGCAGTGACAAAGAGAGAGAAATTCTCTTGGGGGTCTGCAGTGAAAAGGGATGTAATCAGTACCAGGCAAGCCACTTTGAA--TTTTTTTAAAAAATGAACAAATATAAACTATTACTCAAAATTTCTTTCCAGTCTTTTTGGTGCTTCAG-AATATAAATGTGGTTCATTTTTCTCTAATAAATTTCCATTTATTATCATAGTCATCTCTTCGCCGCTCAATCTTTGGTGCTCAATC-AAAGCGGCAAGGTGGTATTTAT-GGAGAAAACAGAA--------------TATTTTTTAACATGGCTATCCTGAATTTTAGAGGCATTT-------ACTAGGGATGAAAAAA-------CT-----GATCTGAAGTTCTTATGC--ATACTCTTACCACCTAAAAGTGTTTAACAGTAAAAATAATACCTTTGTTTCGACCTTTGAGGAACTCCCAAGTATCAGGTGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14136615 767 - 49578535 ------AGTATTCGTGATAAAAATCATT-------CTGAAGGCTAAACGG---AGTATTTTCCATTGTCGATTTCAACATGGTTACCCTTAGCAGCACACTGTTTCTGATGATCATGTATCACTCTCCTTAGCATGTGTAAAAAATGACCTTAGCATCACATTGTAATTACAAGCTTTTTTTTTCTGGCACCTGGTGTTCTTGTTCATGAAGCTCACTGAAATTCGGGAAATAGAGTTTCAGGAGCCTGGAAATAAGAGCACATGTCGTTTCCTCGGCATTCTTCAAAGCCAAAGCCTTAAGAGTCCATGGTTTGT-CCTTTTAAACTCCAGCGAAGGAAAGAAGGGGCCTTGGCAGTGACACAGAAGGCGAAATTCTCTTGGGGCTCTGCCATGAAAAAGGATATAATCAGTATCAGGGAAGACACTTTGAATTTTTTTTT---AAATGAACAAATATAAACCATAACTTAAAATTTCTTTCCAGTCTCTTTGGTGCTTCAG-AATAT--ATGTGGCTCATTTTTCTCTAATAAATTTCCATTTATTTCCATAGTCATCTCCTTGGAGC--------------TCAATCTAGAGTGACCAGGTAGTATTTGT-GAAGAAAACAGAGTTTTGTTTTGTTTTTTTTTTTTACCATGGCTCTCCTGAATTTTAGAGGCACTT-------AAGAGGGACGAAAAAAACTCTCCAT-----GGTCTTAGGTTCTTATGC--ATACTCTTACCATCTAAAAGTGTTTCACAATAAAAATAATACCTTCGTTTTGACCTTTGAGGAACT-CCAAGTATCAGGTTAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178725442 709 + 195471971 ------AGCGCTATTGATAGAGGTAACC-------CAGATGGTTAGGCAGGTAGATGCTTTCTGTTGTAGGTTTCTACATTGT----------AGGTTGCTACTTCTGATAAGTGCACATCATTTTTTTAAGCA---AC-AGGATTGGGTGGAATGCCCCATTGGA--------C-CTCTTTCCATGGTACCTGATCTCTTTGTTCATGAAGCACACTGGAATTTGGAAGAGAGGATTTCATGAGCCTAGACATAATAGCCCGTGTCATTTTCTTGGCATACTCCAGACCCAGAGCCCACCCAGGCTATGGTCTGTCCCTTCCAAAGCCCAGCAGAGGAAAGAAAGGGCCTTGGCAGGGACAAGGGAAGGACTTGTCCCC---AGACCTGTGTTGAAAGGAGATT--ATCAGCATGAGGCGAGCCCCTGTGGA-----TAAAAGAAAATGATGCAGTATAAGCCATCGCTCAGAAGCCAGCTCTGGCCTTTTAGATACTTCAGAAAAATAAATGTGGTTCATTTTTCTCAAATAAATTTTCATACATTATTATAGCTGTCTCTCTGGTGC--------------TCAACCTGAAGTGGCAAGGTAGTATTTATGGGAAAAAGCAAAC--------------TGTTTTGAAACCTGATTATTCAGAATTTTACAGTTATTG-------TCTAGGTTTAAGAGAA---------------AACTTCAGTTGCTATATCAATACCATGAACACCT--GGGTGTTTA-CAGT-----------TCTCATTTTTACCACTGAAGAGCT-CCAAGAATCAGGCTGG i mm10.chr1 C 0 C 0 s canFam3.chr7 36303372 751 + 80974532 AGAATTGGCATTAATGGTAAATGGCATCGAGATGGCTAAAAAATAAACGG---AACATTTTTCATTATTGATTTCAACAT----AGATTCTGCA-CACACTATTTCTGATCATCATCT----TTTCATTTAGCTTGTGC-AAAAATGAGTTTAGCCTCATACCCTAATTAGATAC----TTTTCCTGGCACCTGGCGTGTGTGTTTATGAAGTGCGCTGAAATTCGGGAAATAAAATTTCATGAGTCTAGAAATAATGGCCTGTGTCGTTTTCTTGGCAGTCTCCAAAACCA-AGCCTTAAGAGTCCATAGTTTGT-CCTTTTAAACTCTGGCCATGGGGGGAGAGGGCCTTGGCTGTGACAAAGAAAGAGGAATTATCTTGGGGCTTTTCATGGAAA--GGGTGTAATCAGCACCAGGCAGGCCACTTTGAA-------TAAAAAAATGAACAAATGCAGACCATCACTCAAAATTTATTTCTAGTCTGTTAGGTGCTTCCA-AAAATAAATGTGGCTCATTTTTTTCAAATAAATTTTCATTTATTATCGTATTTGTCTCCTTGGTGC--------------TCAATTTAAAGCGGCAGGGTGGCCTTTGC-AGAGAAAACAGAC--------------TATTTCTGAACCTGGCCATGAGGATTTTTAGTGACATTTTCTAGGGACTAGGGATTAAAAAA-------ATACTAAAGTCTTGAGTCGCTATAC--ATGCTCTCACCACCTACAAGCATTTAAAAATCAAAATAACACCTT-GTTTCCACCCTTGAGGACCT-CTAAGAGTCAGGATAA i canFam3.chr7 C 0 I 219 a score=468941.000000 s hg38.chr1_KI270759v1_alt 128624 133 + 425601 AAATTGAGAGAGG---TAGTGAAAGAGAGTCAGTGATT-----CCAGTGTTTCAGAAAGTCTGACCTGGCCAGGGTCCAGCTGGGCTGC--AAGAACCTCCTTTCTCTCCCTGTCTCTGCAGCTCCATCACTCACCATTCTCT s panTro4.chr1 224879577 133 + 228333871 AAATTGAGAGAGG---TAGTGAAAGAGAGTCAGTGATT-----CCAGCGTTTCAGAAAGTCTGACCTGGCCAGGGTCCAGCTGGGCTGC--AAGAACCTCCTTTCTCTCCCTGTCTCTGCAGCTCCATCCCTCACCATTCTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226235962 133 - 229942017 AAATTGAGAGAGG---TAGTGAAAGAGAGTCAGTGATT-----CCAGTGTTTCAGGAAGTCTGACCTGGCCAGGGTCCAGCTGGGCTGC--AAGAACCTCCTTTCTCTCCCTGTCTCTGCAGCTCCATCACTCATCACTCTCT i ponAbe2.chr1 C 0 M 748 s nomLeu3.chr5 140129158 133 - 143122389 AAATTGGGAGAGG---TAGTGAAAGAGAGTCAGTGGTT-----CCGGTGTTTCAGAAAGTCTGACCTGGCCAGGGTCCAGCTGGGCTGC--AAGAACCTCCTTTCTCTCCCTGTCTCTGTAGCTCCATCACTCACCACTCTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16845529 133 - 229590362 AAATTGGGAGAGG---TAGTGAAAGAGAGTCAGTGATT-----CCAGTATTTCCGAAAGTCTGACCTGGCCAGGGTCCAGCTGGGCTGC--AGGAACCTCCTTTCTGTCCCTGTGTCTGCAGCTCCATCACTCATCACGCCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223606280 133 - 227556264 AAATTGGGAGAGG---TAGTGAAAGAGAGTCAGTGATT-----CCAGTATTTCAGAAAGTCTGACCTGGCCAGGGTCCAGCTGGGCTGC--AAGAACCTCCTTTCTTTCCCTGTGTCTGCAGCTCCATCACTCATCACTCTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16656715 133 - 220367699 AAATTGGGAGAGG---TAGTGAAAGAGAGTCAGTGATT-----CCAGTATTTCAGAAAGTCTGACCTGGCCAGGGTCCAGCTGGGCTGC--AAGaacctcctttctttccctgtctctgcAGCTCCATCACTCACCACTCTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82456475 133 + 85787240 AAATTGGGAGAGG---TAGTGAAACAGAGCCAGTGATT-----CCAGTGTTTCAGAAAGTCTGACCTGGCCAGGGTCCAGCTGGGCTGC--AAGAACCTCCTTTCTTTCCCTGTCTCTGCAGCTCCATCACTCACCCCTCTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14137382 133 - 49578535 AAACTGGGAGAGG---TGGTGAAAGAGAATCAGTGATT-----CCAGTGTTTCATGGAGTCTGACCTGGCCCGGGCCCAGCGGGGCTGC--AGGATACCCCTTCATCTCCCTGTCTCTGCAGCCCTATCACTCACCACGCTCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178726151 134 + 195471971 ATGCTGGGAGAGGACTTGATGACAGAGACTCAGGGATT-----TCCTTGTGTCTAAGAGTCTCAGCTGGCT-GTGTCCAGCCTGGCTGT--GGGGCCCTCCTTCTCCTCTCTGCTGCTGTTACCCTGCC-CCAAGCATTTTCC i mm10.chr1 C 0 I 1 s canFam3.chr7 36304342 130 + 80974532 AAATTCAGAGAGA---TAGTGGTAGAAGGCCAAGGATTATCAGCCAGCATGTTATAAAGTCCAACCCTGTCTGGGATC----TGGCTGCTAAAGAGCCTCCTCT-----CCTGGGCCTGCAGCCCC-TCCCACACCACTGTCT i canFam3.chr7 I 219 C 0 a score=328104.000000 s hg38.chr1_KI270759v1_alt 128757 149 + 425601 CCAAGTCCCTT-GGGAATACATGGGGAGAACCTAG-TGGCCAtagcagatac-----------------------------tgctggtccccctcttccccca-ctccttgccacctcatcatttgcttgcacaaaaccttatggttctcaaggcc----cagcacctgtgactctgcccga---ggg s panTro4.chr1 224879710 149 + 228333871 CCAAGTCCCTT-GGGAATACATGGGGAGAACCTAG-TGGCCAtagcagatac-----------------------------tgctggtccccttcttccccca-ctccttgccacctcatcatttgcttgcacaaaaccttatggttctcaaggcc----cagcacctgtgactctgcccga---ggg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140129291 147 - 143122389 CCAAGT-CCTT-GGGAATACACAGGGAGAACCTAG-TGGCCAtagcagatac-----------------------------tgctggtcccc-tcttccccca-tcccttgccacctcatcatttgcttgcacaaaaccttgtggttctcaaggcc----cagcacctgtgactgtgcccaa---ggg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16845662 145 - 229590362 CCAAGTCCCTT-GGGAATACGCAGGGAGAACCGAG-TGGCCgtagcagatac-----------------------------tgctggtccccctctt-cccca-tcccttgccacctcatcattcacttgcacaaaaccttatggttctcaaggcc----cagcacctgtgactctgcccaa------ i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223606413 146 - 227556264 CCAAGTCCCTT-GGGAATACGCAGGGAGAACCTAG-TGGCCAtagcagatac-----------------------------tgctggtccccctcttccccca-tcccttgccacctcatcattcacttgcacaaaaccttatggttctcaaggcc----cagcacctgtgactctgcccaa------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16656848 146 - 220367699 CCAAGTCCCTT-GGGAATACGCAGGGAGAACCTAG-TGGCCATAGCAGATAC-----------------------------TGCTGGTCCCCCTCTTCCCCCA-TCCCTTGCCACCTCATCATTCACTTGCACAAAACCTTATGGTTCTCAAGGCC----CAGCACCTGTGACTCTGCCCAA------ i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82456608 149 + 85787240 CCAAGTCCCTT-GGGAATACGCAGGGAGAACCTAG-TGGCCAtagcagatac-----------------------------tgctggtccccctcttccccca-tcccttgccaccgcatccttcacttgcacaaaaccttatggttctcaaggcc----cagcacctgtgactctgcctgaggg--- i chlSab2.chr25 C 0 I 88 s calJac3.chr19 14137515 145 - 49578535 CCAAGTCTCCT-GGGAACACACACGGAGAGCCTGG-TGGCCAtagcagacac-----------------------------tgctggtctccctctgcctccagccccttcccgcctcatcattcacctgcacaaacccttacggttctcaag---------gcacctgcgactctgccttc---agt i calJac3.chr19 C 0 C 0 s mm10.chr1 178726286 172 + 195471971 CAAAGGCCTTTCAGGAGCTCATGAGAAGAC---------CCATACcacatgcatacacacacacacacacacacacacacacacacacacacacacacacaca-cTTTTTCCTACT---TAACTTTCTTATATAAAACTTCATATTTCTCATGAGCTAATTAACGTCTGTGGCAATATCTGA---GAG i mm10.chr1 I 1 C 0 s canFam3.chr7 36304472 145 + 80974532 -CCAGCCCTCC-AGGAATTCACAAGATGAACATAACTGATGGCAGCATGTAC-----------------------------TGTTGAGTTTCTAC--CCCCCT-GTGCCTGCCACA-CATCATTCTC-TGAGCAAAACCTTGTAGCTCCTGAGGTC----CAGTTTTTGTGActctgcccaa---ggg i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226236095 748 - 229942017 M a score=70607.000000 s hg38.chr1_KI270759v1_alt 128906 46 + 425601 tttcctctggctgtgggagccccctgcacccacacagggggcaggc s panTro4.chr1 224879859 46 + 228333871 tttcctctggctgtgggagccccctgcacccacacagggggcaggc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140129438 46 - 143122389 tttcctctggctgtgggagcccccggcaccaacacagggggcaggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16845807 32 - 229590362 --------------gggagccccctgcacccacacagggggcaggc i rheMac3.chr1 C 0 I 20 s macFas5.chr1 223606559 32 - 227556264 --------------gggagccccctgcacccacacagggggcaggc i macFas5.chr1 C 0 I 59 s papAnu2.chr1 16656994 32 - 220367699 --------------GGGAGCCCCCTGCACCCACACAGGGGGCAGGC i papAnu2.chr1 C 0 I 20 s calJac3.chr19 14137660 46 - 49578535 tttgctccggctgcaggaccctcctgcactcacacgtggggtaggc i calJac3.chr19 C 0 I 20 s mm10.chr1 178726458 44 + 195471971 TTTCCACTGACTACTGAG--CCCTAGTATTTGCCCACAGTGTGGTC i mm10.chr1 C 0 C 0 s canFam3.chr7 36304617 46 + 80974532 ttttctctgactgctggagcccactgcgttcaagcatgggactggc i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82456757 88 + 85787240 I e ponAbe2.chr1 226236095 748 - 229942017 M a score=54115.000000 s hg38.chr1_KI270759v1_alt 128952 39 + 425601 ---------------------cacttgggagcag-gcccaggtaagactggcaggagttgg s panTro4.chr1 224879905 39 + 228333871 ---------------------cacttgggagcag-gcccaggtaagactggcaggagttgg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140129484 39 - 143122389 ---------------------cacttgggagcag-gcccaggtaagactggcagtagttgg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16845859 39 - 229590362 ---------------------ctcttgggagcag-gcccaggtaagactggcaggagttgg i rheMac3.chr1 I 20 C 0 s papAnu2.chr1 16657046 39 - 220367699 ---------------------CTCTTGGGAGCAG-GCCCAGGTAAGACTGGCAGGAGTTGG i papAnu2.chr1 I 20 C 0 s calJac3.chr19 14137726 39 - 49578535 ---------------------ctcttggcagcag-gcccaggtaagcctggcaggagctgg i calJac3.chr19 I 20 C 0 s mm10.chr1 178726502 37 + 195471971 ---------------------TAGTTTGT--CAA-GTCGGGGTGGGATGGGGTCTAGGGGG i mm10.chr1 C 0 C 0 s canFam3.chr7 36304663 61 + 80974532 cagggtgccagggagccaatgctcttggaaaaagctcccaaatatgactgacaggagttgg i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82456757 88 + 85787240 I e macFas5.chr1 223606591 59 - 227556264 I e ponAbe2.chr1 226236095 748 - 229942017 M a score=38383.000000 s hg38.chr1_KI270759v1_alt 128991 115 + 425601 tggataaacaccccagctctcttgtctctagg--tggggataattctgaggcatggtctactctgtc-----------tcccatatttccctggcaggattgagcc---------ccagttgtctgtgtccataacc s panTro4.chr1 224879944 115 + 228333871 tggataaacaccccagctctcttgtctcttgg--tggggataattctgaggcatggtctaccctgtc-----------tcccatatttccctggtaggattgagcc---------ccagttgtctgtgtccataacc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140129523 113 - 143122389 tggataaacaccccag--ctcttatctcttgg--tggggataattctgaggcatggtctaccctgtc-----------tcccatatttccctggtaggattgagcc---------ccagttgcctgtgtccataacc i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16657085 40 - 220367699 -----------------------------TGC--TTGAGA----------ACACAGACTGTggtatc-----------ttccttccttccct--------------------------------------------- i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14137765 111 - 49578535 ----agggtccaccagctcctttagctcttgg--tggggataactctgaggcatggtctgtcctgtc-----------tcccatattttccagggaggattgagcc---------ccagtggcccatgtccataacc i calJac3.chr19 C 0 C 0 s mm10.chr1 178726539 77 + 195471971 ----------------------TGTGTAATGACTTGGGAGCAGCTCCTAGACAAGA----------------------------------CTGGCAGGGACCAGTTGACATAAAGCCACTTCTTTGT-TCCATA--- i mm10.chr1 C 0 C 0 s canFam3.chr7 36304724 125 + 80974532 -gggtaaatgccccagctcccctgccccttgg--tagggacatcgctgagacctggtccaccctgaccctggtccttgttccatatttcctaaataggactgagcc---------tcagctgtctacatcagcagcc i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16845898 0 - 229590362 C e chlSab2.chr25 82456757 88 + 85787240 I e macFas5.chr1 223606591 59 - 227556264 I e ponAbe2.chr1 226236095 748 - 229942017 M a score=397936.000000 s hg38.chr1_KI270759v1_alt 129106 165 + 425601 tgcttgagaacacagactctggtatc--ttccttccttccct-tctcccttcctcactgtcttatggctgttacctagagtcacctcccagtt-aacctaccagcac---cctcatccttgtacaaggatatgtctgagggaacTTGGTATAAGATATTGGAAGTATATGCT s panTro4.chr1 224880059 165 + 228333871 tgcttgagaacacagactctggtatc--ttccttccttccct-tctcccttcctcactgtcttatggctgttacctagagtcacctcccagtt-aacctaccagcac---cctcatccttgtacaaggatatgtctgagggaaTTTGGTATAAGATATTGGAAGTATATGCT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140129636 165 - 143122389 tgcttgagaacacagactctggtatc--ttccttccttccct-tctcccttcctcactgtcttatggctgttacctagagtcacctcccagtt-aacctaccagcac---cctcatccttgtacaaggatatgtctgagggaacTTGGTATAAGATATTGGAAGTATATGCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16845898 164 - 229590362 tgcttgagaacacagactgtggtatc--ttccttccttccct-tctcccttcctcactgtcttatggctgttacctagagtcacctccca-tt-aacctaccagcac---cctcatccttgtacaaggatacatctgagggaacTTGGTATAAGATATTGGAAGTATATCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223606650 164 - 227556264 tgcttgagaacacagactgtggtatc--ttccttccttccct-tctcccttcctcactgtcttatggctgttacctagagtcacctccca-tt-aacctaccagcac---cctcatccttgtacaaggatacatctgagggaacTTGGTATAAGATATTGGAAGTATATCCt i macFas5.chr1 I 59 C 0 s papAnu2.chr1 16657125 125 - 220367699 -------------------------------------------tctcccttcctcactGTCTTATGGCTGTTACCTAGAGTCACCTCCCAGTT-AACCTACCAGCAC---CCTCATCCTTGTACAAGGATACATCTGAGGGAACTTGGTATAAGATATTGGAAGTATATCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82456845 165 + 85787240 tgcttgagaacacagactgtggtatc--ttccttcctctcct-tctcccttcctcactgtcatatggctgttacctagagtcgcctcccagtt-aacctaccagcac---cctcatccttgtacaaggatgcatctgagggaacTTGGTATAAGATATTGGAAGTATATCCT i chlSab2.chr25 I 88 C 0 s calJac3.chr19 14137876 165 - 49578535 tgcttgatgacacagactctgggatc--gtcctttcttcgct-tctcacttccccactttcttatagctgttacctagagtcacctcccagttaaacctaccagca----cctcatccttgtacaagggtgtttctgagggaacTTGGTGTACGATATTGGAAGTATATCCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178726616 128 + 195471971 ---TCTGGAATA---ACACTGGTAAAAGGTCCTTCCACCACT-TAGATTTTC-------------------TAAGTAGACTGACGGACAAGTG-A---TACCAGTTG---TC-AATCC-----CAGGGATGTTTCCAAGGGAACCCTGTGTAAGATCCTGAGAGTA-----T i mm10.chr1 C 0 C 0 s canFam3.chr7 36304849 168 + 80974532 tgcttgataatgcatattctggtggc--ttcctttccttcctgtctcactcc--cattcccctactgctgcttcctggaataacctgccaattaaacctccttgcactctcctcatcctcatccagggatggtcccaagaagacccagcataagataTTGGCAGTATATCct i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226236095 748 - 229942017 M a score=94006.000000 s hg38.chr1_KI270759v1_alt 129271 54 + 425601 CTTTTGtccatccatccatccatccatccatccatccatccatccatccatctc s panTro4.chr1 224880224 54 + 228333871 CTTTTGtccatccatccatccatccatccatccatccatccatccatccatctc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140129801 50 - 143122389 CTTTTG----tccatccatccatccatccatccatccatccatccatccatctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16846062 54 - 229590362 CTttcgtccgtccatccatccgtccgtccatccatccatcgctccatccatcca i rheMac3.chr1 C 0 I 16 s macFas5.chr1 223606814 34 - 227556264 ctttcgtccgtccatccatccatccatccatcca-------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16657250 54 - 220367699 CTTtcgtccgtccgtccatccatccatccatccatccatccatccatccatcca i papAnu2.chr1 C 0 I 152 s chlSab2.chr25 82457010 36 + 85787240 CTTTTGTTGatccatccatccatccatccatccatc------------------ i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14138041 49 - 49578535 CTTTcatccatccatccatccatttgtctctctacccacccacccacct----- i calJac3.chr19 C 0 C 0 s mm10.chr1 178726744 53 + 195471971 CTATcatccatccactcatctatccacccatctatccaaccatccatccatct- i mm10.chr1 C 0 C 0 e canFam3.chr7 36305017 0 + 80974532 C e ponAbe2.chr1 226236095 748 - 229942017 M a score=168777.000000 s hg38.chr1_KI270759v1_alt 129325 110 + 425601 tccatccacccattcatccatccatccatctc--------tccatccatccatccatccatc--------------------catccatccatccatccatctctccatccatccatccatcca------------------------tctctccatctacc s panTro4.chr1 224880278 118 + 228333871 tccatccactcatccatccatccatccatctctccatccatccatccatccatccatccatc--------------------catccatccatccatccatctctccatccatccatccatcca------------------------tccatccatccatc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140129851 134 - 143122389 tccatccacccattcatccatccatccatctc--------tccatccatccatccatccatc--------------------catccatccatccatccatctcaccatccatccatccatccatccatccttccatccttccatctctccatccatctctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16846132 130 - 229590362 tccatccatctctccatccatccatccatcgc--------tccatccatccatccatccatctatctctctatccgcccgctcatccatccatccatccatccatccatccatctatccatcca------------------------tccatccatccatc i rheMac3.chr1 I 16 C 0 s macFas5.chr1 223606848 78 - 227556264 ----------------------------------------tccatccatccatccatccatc--------------------catccatccatccatccatccatccatccatccatccatcca------------------------tccatccatccatc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16657456 126 - 220367699 tccatccatccatccatccatccctccatcca--------tccatccatccatccatccatccatctctccatccatc----catccatctctccatctatccatccatccatccatccatcca------------------------tccatccatccatc i papAnu2.chr1 I 152 C 0 s chlSab2.chr25 82457046 44 + 85787240 --------------------------------------------------------------------------------------tctccatccatccatccatccatccatccatccatcca------------------------tccatc-------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14138090 107 - 49578535 ---atccatccatccatccatccatccatctt--------tccatctacccacccacccaca--------------------catccatccatccacccacccacccacccatccatccatctc------------------------tccatctacccacc i calJac3.chr19 C 0 C 0 s mm10.chr1 178726797 97 + 195471971 ---gtccacccatccatccattcatccatcta--------ttcat---------catccata--------------------tatctacctatccatccatctgtccattcatccagtcatcc-------------------------tttacccatctatc i mm10.chr1 C 0 C 0 e canFam3.chr7 36305017 0 + 80974532 C e ponAbe2.chr1 226236095 748 - 229942017 M a score=2749.000000 s hg38.chr1_KI270759v1_alt 129435 13 + 425601 catcca--------tccatcc s panTro4.chr1 224880396 13 + 228333871 catcca--------tccatcc i panTro4.chr1 C 0 I 12 s nomLeu3.chr5 140129985 13 - 143122389 catcca--------tccatcc i nomLeu3.chr5 C 0 I 36 s rheMac3.chr1 16846262 21 - 229590362 catccatctatctctctatcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223606926 13 - 227556264 tatctc--------tctatcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16657582 21 - 220367699 catccatccatctctctgtcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82457090 9 + 85787240 ------------tctctatcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14138197 9 - 49578535 caccca--------ccc---- i calJac3.chr19 C 0 C 0 s mm10.chr1 178726894 4 + 195471971 caGC----------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36305017 13 + 80974532 cattca--------ctcatcc i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226236095 748 - 229942017 M a score=18740.000000 s hg38.chr1_KI270759v1_alt 129448 5 + 425601 atcca s panTro4.chr1 224880421 5 + 228333871 atcca i panTro4.chr1 I 12 C 0 s ponAbe2.chr1 226236843 5 - 229942017 atcca i ponAbe2.chr1 M 748 C 0 s nomLeu3.chr5 140130034 5 - 143122389 atcca i nomLeu3.chr5 I 36 C 0 s rheMac3.chr1 16846283 5 - 229590362 gcccg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223606939 5 - 227556264 accca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16657603 5 - 220367699 accca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82457099 5 + 85787240 accca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14138206 5 - 49578535 accca i calJac3.chr19 C 0 I 11 s mm10.chr1 178726898 5 + 195471971 ATCTA i mm10.chr1 C 0 C 0 s canFam3.chr7 36305030 5 + 80974532 accca i canFam3.chr7 C 0 C 0 a score=1133146.000000 s hg38.chr1_KI270759v1_alt 129453 398 + 425601 tccatccatccatccatccatccacccacccaaccatccaacaagcatttggtaagctcatgctgtatgccaggtattgtgttaggcaccgaggagagcaag--------aggacagccaccgccctcagggagctctcagtccagcagggcagccagTCCCAGGATAGGACAGTGAGAAAGGACATGGAGGTTCAAGACAGAAAAATTCATAAAGCCATCCAGTATGGCTTTTGCTCTCCCGGTGTCTTCAGGTTGTTTAAAAATTAAAGGTGGCtttccagcacctattattatcagaaatggtcttattggttcacttgcttactagtccattgcctgtctcccttcctagaatgtaagatccatggaaagaggtacttgtctagcttattccatcattgctt s panTro4.chr1 224880426 398 + 228333871 ttcatccatccatccatccatccacccacccaaccatccaacaagcatttggtaagctcatgctgtatgccaggtattgtgttaggcaccgaggagagcaag--------aggacagccaccgccctcagggagctctcagtccagcagggcagccagTCCCAGGATAGGACAGTGAGAAAGGACATGGAGGTTCAAGACAGAAAAATTCATAAAGCCATCCAGTATGGCTTTTGCTCCCCCGGTGTCTTCAGGTTGTTTAAAAATTAAAGGTGGCtttccagcacctattattatcagaaatggtcttattggttcacttgcttactagtctattgcctgtctcccttcctagaatgtaagatccatggaaagaggtacttgtctagcttattccattgttgctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226236848 392 - 229942017 tccatccaaccatccatccatccacccacccaaccatccaacaagcatttggtaagctcatgctgtatgccaggtattgtgttaggcaccgaggagagcaag--------aggacagccactgccctcagggatctctcagtccagcagggcagccagTCCCAGGATACGACAGTGAGAAAGGACATGGAGGTTCAAGACAGAAAAATTCATAAAGCCATCCAGTA------TTGCTCTCCCGGTGTCTTCAGGTTGTTTACAAATTAAAGGTGGCtttccagcacctattattatcagaaatggtcttattggttcacttgcttactagtctattgcctgtctcccttcctagaatgtaagatccatggaaagaggtacttgtctagcttattccattattgctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140130039 392 - 143122389 tccatctctccatccatccatccaaccatccaaccatccaacaagcatttggtaagctcatgctgtatgccaggtattgtgttaggcaccgaggagagcaag--------aggacagccaccgccctcagggagctctcagtccagcagggcaaccagTCCCAGGATAGGACAGTGAGAAAGGACATGGAGGTTCAAGACAGAAAAATTCATAAAGCCATCCAGTA------TTGCTCTCCCGGTGTCTTCAGGTTGTTTAAAAACTAAAGGTGGCtttccagcacctattattatcagaaatggtcttattggttcacttgcttactagtctattgcctgtctcccttcctagaatgtaagatccatggaaagaggtacttgtctagcttattcCATTATTGCTT i nomLeu3.chr5 C 0 M 1778 s rheMac3.chr1 16846288 392 - 229590362 ctcatccatccatccatccatccacccacccacccatccaacaagcatttggtaagctcatgctgtgtgccaggtattgtgttaggcaccgaggagagcaag--------aggacagccaccaccctcagggagctctcagtccagcaggacagccagtcccaggataagacagtgagaaAGGACATGGAGGTTCAGGACAGAAAAATTCGTAAAGCCATCCAGTA------TTGCTCTCCCGGTGTCTTCAGGTTGTTTACTAATTAAAGGTGGCTTTCCAGTGCCTATTATTACCAGAAATGGTCTTACTGGttcacttgcttactagtctattgcctgtccccttccctagaatgtaagatccatggaaagaggtacctgtctagcttattccattgttgctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223606944 392 - 227556264 ctcatccatccatccatccatccacccacccacccatccaacaagcatttggtaagctcatgctgtgtgccaggtattgtgttaggcaccgaggagagcaag--------aggacagccaccaccctcagggagctctcagtccagcaggacagccagtcccaggataagacagtgagaaAGGACATGGAGGTTCAGGACAGAAAAATTCGTAAAGCCATCCAGTA------TTGCTCTCCCGGTGTCTTCAGGTTGTTTACTAATTAAAGGTGGCTTTCCAGTGCCTATTATTACCAGAAATGGTCTTACTGGttcacttgcttactagtctattgcctgtccccttccctagaatgtaagatccatggaaagaggtacctgtctagcttattccattgttgctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16657608 392 - 220367699 ctcatccatccatccatccatccacccacccacccatccaacaAGCATTTGGTAAGCTCATGCTGTGTACCAGGTATTATGTTAGGCACCGAGGAGAGCAAG--------AGGACAGCCACCACCCTCAGGGAGCTCTCAGTCCAGCAGGACAGCCAGTCCCAGGATAAGACAGTGAGAAAGGACATGGAGGTTCAGGACAGAAAAATTCGTACAGACATCCAGTA------TTGCTCTCCTGGTGTCTTCAGGTTGTTTACTAATTAAAAGTGGCTTTCTAGCACCTGCTATTATCAGAAATGGTCTTACTGGTTCACTTGCTTACTAGTCTATTGCCTGTCCCCTTTCCTAGAATGTAAGATGCATGGAAAGAGGTACTTGTCTAGCTTATTCCATTGTTGCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82457104 392 + 85787240 ctcatccatccatccatccatcTACCCACCcacccatccaacaagcatttggtaagctcatgctgtgtaccaggtattgtgttaggcaccgaggagagcaag--------aggacagccaccaccctcagggagctctcagtccagcaggacagccagtcccaggataagacagtgagaaAGGACATGGAGGTTCAGGACAGAAAAATTCGTAAAGCCATCCAGTA------TTGCTCTCCCTGTGTCTTCAGGTTGTTTACTAATTAAAGGTGGCtttccagcacctattattatcagaaatggtcttactggttcacttgcttactagtctgttgcctgtcccctttcctagaatgtaagatccatggaaagaggtacttgtctagcttattccattgttgctt i chlSab2.chr25 C 0 C 0 s mm10.chr1 178726903 294 + 195471971 ---------------------------------------------TTATTGGTAGG----------ACACACGGTACTATCCTAGATACTTAAGAAACCAAAACAGAACTAGGACAGCCAATTCCATTAAGGAGATCTCAGCCCAATAAGA-------------------ACAGCTAGAAACAACATACACAATTAGGACAG---AGTATACAGAAACATTTGCTA------TTGCCTTACCTAAGCCTTTGGTGTGCTTAGAAGTTAAAAGTGTCTTCCCATAACTCACTTTTGTCGAAAATGATCTTCTTCCTTTATTCGCTTACTAGCCTGATGCCCAAATCCCTTTCCTGAA-----------------------------TAGCTCATTCCATCTTTACAT i mm10.chr1 C 0 I 1 s canFam3.chr7 36305035 374 + 80974532 --------cccatccatcccccccactacgtacccaccAaaccagcatttcctaagtccatgctatatgccaggcattatatgagtcactgaagatggtaaa--------caggcagccactgccctcaggaagctccaagtccaCAGGAGCCTCCAGTCCCATTGCTAGGCAGTTATAAACAACATG-AAGTTCAGGACAGAGAAG--AATCAGAATTCCTGGTA------TTAGTCTCC------CTTCCAGTCATTTGGATGTTGAAGTCGActttgcagcacccattactatcagaaattatcttattcactcacttgtctactggtttattgcctgtctccctttctagactgtacaatccatagaaagaagcacttgtctatct-gttccatagtcatat i canFam3.chr7 C 0 C 0 e calJac3.chr19 14138211 11 - 49578535 I a score=620615.000000 s hg38.chr1_KI270759v1_alt 129851 297 + 425601 cctcaactcttagaacag------gggccaggctggcgcatgataaacatttggtaagtgcatCTCATAGTCATTAAGGCGTCTGCTGTGGAAAGTTTGTCAGTTTCCTCCTGTTCCTCCCGGAGTAAGCTCATCCATGTTGAAATATACCCAAGCTCCACTCTGGATGCAGTG-TTCCAGTGCACTGTGGAA-GTCTCTGCTCAGGACAGGAGGGATAGCAAGTG------TGC---TGCCC----ACCCTAGGTCCGAGGTGGCC---ACTTCCTGCTAGCCACTGCTCCTTGGGAACAAAGGACACTTGCCCAAGTGT s panTro4.chr1 224880824 298 + 228333871 cctcaactcttagaacag------gggccaggctggcgcatgataaacatttggtaagtgcatCTCATAGGCATTAAGGCGTCTGCTGTGGAAAGTTTGTCAGTTTCCTCCTGTTCCTCCCGGAGTAAGCTCATCCATGTTGAAATATACCCAAGCTCCACTCTGGATGCAGTGTTTCCAGTGCACTGTGGAA-GTCTCTGCTCAGGACAGGAGGGATAGCAAGTG------TGC---TGCCC----ACCCTAGGTCCGAGGTGGCC---ACTTCCTGCTAGCCACTGCTCCTTGGGAACAAAGGACACTTGCCCAAGTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226237240 298 - 229942017 cctcaactcttataacag------gggccaggctggcacatgataaacatttggtgagtgcatCTCGTAGTCATTAATGTATCTGCTGTGGAAAGGTTGTCAGTTTCCTCCTGTTCCTCCCGGAGTAAGCTCATCCGTGTTGAAATATACCCAAGCTCCACTCTGGATGCAGTGTTTCCAGTGCACTGTGGAA-GTCTCTACTCAGGACAGGAGGGATAGCAAGTG------TGC---TGCCC----ACCCTGGGTCCGAGGTGGCC---ACTTCCTGCTAGCCACTGCTCCTTGGGAACAAAGGACGCTTGCCCAAGTGT i ponAbe2.chr1 C 0 I 44 s rheMac3.chr1 16846680 297 - 229590362 cctcaactcttagaagag------gggccaggctggtgcatgataaacatttggtgagtgcatCTTGTAGTCATTAAGGCATCTGCTGTGGAAAG-TTGTCAGTTTCCTCCTGTTCCTCCTGGAGGAAGCTCATCCATGTTGAAATATACGGAAGTTCCACTCTGGAAGCAGTGTTTCCAGCGCACTGTGGAA-GCCTCTGCTCAGGACAGGAAGGATAGCAAGTG------TGC---TGCCC----ACCCTGGGTCCGAGGTGGCC---ACTTCCTGCTAGCCACTGCTCCTTGGGAACAAAGGACGCTTGCCCAAGTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223607336 298 - 227556264 cctcaactcttagaagag------gggccaggctggtgcatgataaacatttggtgagtgcatCTTGTAGTCATTAAGGCATCTGCTGTGGAAAGTTTGTCAGTTTCCTCCTGTTCCTCCTGGAGGAAGCTCATCCATGTTGAAATATACGGAAGTTCCACTCTGGAAGCAGTGTTTCCAGCGCACTGTGGAA-GCCTCTGCTCAGGACAGGAGGGATAGCAAGTG------TGC---TGCCC----ACCCTGGGTCCAAGGTGGCC---ACTTCCTGCTAGCCACTGCTCCTTGGGAACAAAGGATGCTTGCCCAAGTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16658000 298 - 220367699 CCTCAACTCTTAGAACAG------GGGCCAGGCTGGTGCATGATAAACATTTGGTGAGTGCATCTCCTAGTCATTAAGGCATCTGCTGTGGAAAGTTTGTCAGTTTCCTCCTGTTCCTCCTGGAGGAAGCTCATCCATGTTGAAATATACCGAAGTTCCACTCTGGAAGCAGTGTTTCCAGTGCACTGTGGAA-GCCTCTGCTCAGGACAGGAGGGATAGCGAGTG------TGC---TGCCC----ACCCTGGGTCCGAGGTGGCC---ACTTCCTGCTAGCCACTGCTCCTTGGGAACAAAGGACGCTTGCCCAAGTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82457496 298 + 85787240 cctcaactcttagaacag------aggccaggctggtgcatgataaacatttggtgagtgcatCTCCTAGTCATTAAGGCATCTGCTGTGGAAAGTTTGTCAGTTTCCTCCTGTTCCTCCTGGAGGAAGCTCATCCATGTTGAAATATACCGAAGTTCCACTCTGGAAGCAGTGTGTCCAGTGCACTGTGGAA-ACTTCTGCTCAGGACAGGAGGGATAGCAAGTG------TGC---TGCCC----ACCCTGGGTCCGAGGTGGCC---ACTTCCTGCTAGCCACTGCTCCTTGGGAACAAAGGACACTTGCCCAAGTGT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178727198 254 + 195471971 CTCCATTTCTAGGGAGAGGCCTGAGCTCCTGGCAGCCTCAAACAGAGTATCTGGGGAGTGCACCTCGGGGTGGCGATGGTGTATGCCATGG--AGGTTGCCAGCTTCCTCCCCTGTCCACTGGTG-AAGTCCATCC--------------------TTCACCTCAGAAGCAGTGTCTCCTGAGCACTGTGGAGCACATCTAC--------------ATAACCACTG----------------C----ACCCGAGGCTTCAGG---------CCTCCTTCCAGACCCTGCTTCTT-TAAACCTAGTTCTTTTGCTCAACTGT i mm10.chr1 I 1 C 0 s canFam3.chr7 36305409 288 + 80974532 cctcaactctaagaatgg------------agctggcgcccagtaaatatttggtgagtgcatCTTGGAAGTGTCA-GGAGTCTGCCCAAGAG------------TCCTCTTCTCCCTCCTGG-GATTGTTCATCTGTGCTG---TGTAGCTAAGCTCTACTGTGGACATAGTGTCTCCAACTCAC--TGAAA-GCCTCTGCTCAGAGCAGGCGAGAAAGAGCGTGGCTCCCTGCCTATGCCCTTGGACCCCATGCCCCTGAGGGCTGGAGCTTCTTTCCAGTCACTGCGCCTGGAGAATGAAGTAC-TTTGCCCAACTGT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M a score=19283.000000 s hg38.chr1_KI270759v1_alt 130148 10 + 425601 GTCCCTAAGG s panTro4.chr1 224881122 10 + 228333871 GTCCCTAAGG i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16846977 10 - 229590362 GTCCCTAAGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223607634 10 - 227556264 GTCCCTAAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16658298 10 - 220367699 GTCCCTAAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82457794 10 + 85787240 GTCCCTAAGG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178727452 10 + 195471971 GTCCTTTTGG i mm10.chr1 C 0 C 0 s canFam3.chr7 36305697 10 + 80974532 GTAGCTGAGG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M e ponAbe2.chr1 226237538 44 - 229942017 I a score=6876.000000 s hg38.chr1_KI270759v1_alt 130158 2 + 425601 TG s panTro4.chr1 224881132 2 + 228333871 TG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226237582 2 - 229942017 TG i ponAbe2.chr1 I 44 C 0 s rheMac3.chr1 16846987 2 - 229590362 TG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223607644 2 - 227556264 TG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16658308 2 - 220367699 TG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82457804 2 + 85787240 TG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178727462 2 + 195471971 TG i mm10.chr1 C 0 I 35 s canFam3.chr7 36305707 2 + 80974532 TG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M a score=19685.000000 s hg38.chr1_KI270759v1_alt 130160 8 + 425601 AGCGCTTT s panTro4.chr1 224881134 8 + 228333871 AGCGCTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226237584 8 - 229942017 AGTGCTTT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16846989 8 - 229590362 AGTGCTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223607646 8 - 227556264 AGTGCTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16658310 8 - 220367699 AGTGCTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82457806 8 + 85787240 AGTGCTTT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36305709 8 + 80974532 AGTGCTTT i canFam3.chr7 C 0 I 11 e mm10.chr1 178727464 35 + 195471971 I e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M a score=246348.000000 s hg38.chr1_KI270759v1_alt 130168 131 + 425601 AGCATCAAGAATTATTCAACTGAAAGGAGTTggccggacccagtggctcacgcctgtaaatctcagcactttgggaggccaaggtgggtggatcacgaggtcaggagttcgagaccagcctggccaacatg s panTro4.chr1 224881142 131 + 228333871 AGCATCAAGAATTATTCAACTGAAAGGAGTTggccggacccagtggctcacgcctgtaaatctcagcactttgggaggccaaggtgggtggatcacgaggtcaggagttcgagaccagcctggccaacatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226237592 131 - 229942017 AGCATCAAGAATTACTCAACTGAAAGGAGTTGgctggacccagtgactcacacctgtaaatctcagcactttgggaggacaaggtgggtggatcacgaggtcaggagttcgagaccagcctgaccaacatg i ponAbe2.chr1 C 0 M 4298 s rheMac3.chr1 16846997 131 - 229590362 AGCATCAAGAATTATTCAACTGAAAGGAGTTggccagacccagtggctcacgcctataaatcccagcactttgggaggccaaggtgggcagatcacaaggtcaggagtttgggaccagcctggccaacatg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223607654 131 - 227556264 AGCATCAAGAATTATTCAACTGAAAGGAGTTggccggacccagtggctcacgcctataaatcccagcactttgggaggccaaggtgggcagatcacaaggtcaggagtttgggaccagcctggccaacatg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16658318 131 - 220367699 AGCATCAAGAATTATTCAACTGAAAGGAGTTGGCCggacccagtggctcacgcctataaatcccagcactttgggaggccaaggtgggcagatcacagggtcaggagtttgggaccagcctggccaacatg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82457814 131 + 85787240 AGCATCAAGAATTATTCAACTGAAAGGAGTTggccggacccagtggctcacgcctataaatcccagcactttgggaggccaaggtgggcagatcacaaggtcaggagtttgggaccagcctggccaacatg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178727464 35 + 195471971 I e canFam3.chr7 36305717 11 + 80974532 I e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M a score=250915.000000 s hg38.chr1_KI270759v1_alt 130299 221 + 425601 acaaaaccccgtccctactaaaaatacaaaaattagccaggcgtggtggtgcgcacctggaatccgagcgacttgggaggctgagacaggagaatcacttgaacctgggaggtggaggttgcagtgagctgagattgcgtcactgcactccagcctgggcgacagagtgagactctgtctc------aaaaaaaaaaaaaaaGAGTTTTCTTCTAAATAGCTTGCTG s panTro4.chr1 224881273 224 + 228333871 acaaaaccccgtccctactaaaaatacaaaaattagccaggcgtggtggtacgcacctgtaatccgagcgacttgggaggctgaggcaggagaatcacttgaacctgggaggtggaggtttcagtgagccgagattgcatcgctgcactccagcctgggcgacagagtgagactctgtctc---aaaaaaaaaaaaaaaaaaGAGTTTTCTTCTAAATAGCTTGCTG i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16847128 207 - 229590362 acaaaaccctgtgtctactaaaaatacaaaaattagccgggtgtgatggtatgtgcctgtaatcccagcaactcagaaggctgaggcaggagaatctcttgaacctgggaggtggaggttgcagtgagccg--------------------agtctaggcaacagagtgagactctgtctcaataaaaaaataaaaaaGAGAGAGTTTTCTTCTAAATAGCTTGCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223607785 207 - 227556264 acaaaaccctgtgtctactaaaaatacaaaaattagccgggtgtgatggtatgcgcctgtaatcccagcgactcagaaggctgaggcaggagaatctcttgaacctgggaggtggaggttgcagtgagccg--------------------agtctaggcaacagagtgagactctgtctcaataaaaaaataaaaaaGAGAGAGTTTTCTTCTAAATAGCTTGCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16658449 207 - 220367699 acaaaaccctgtctctactaaaaatacaaaaattagccgggtgtgatggtacgcgcctgtaatcccagcgactcagaaggctgaggcaggagaatctcttgaacctgggaggtggaggttgcagtgagccg--------------------agtctaggcaacagaatgagactctgtctcaataaaaaaataaaaaagagagagttttCTTCTAAATAGCTTGCTg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82457945 207 + 85787240 gcgaaaccctgtctctactaaaaatacaaaaattagccgggtgtgatggtacgcgcctgtaatcccagcgactcagaaggctgaggcaggagaatctcttgaacctgggaggtggaggttgcagtgagccg--------------------agtctaggcaacagagtgagactctgtctcaataaaaaaataaaaaaGAGAGAGTTTTCTTCTAAATAGCTTGCTG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178727464 35 + 195471971 I e canFam3.chr7 36305717 11 + 80974532 I e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M e ponAbe2.chr1 226237723 4298 - 229942017 M a score=348426.000000 s hg38.chr1_KI270759v1_alt 130520 249 + 425601 AGTTTCTCTATTTTCTTTGTACACTGAATTCTAAACTCTCAGTTGGGAGATTCTGCCAATGAAACACTCTTTGCAGTCTCCTACCTCTGCTACCTGGGCTTGC----TTGATGCTGGGTGATGAACCACCCAGGTACCTACACAACACCCTGGTTGTCAGCAGTGGCAGTGGAAAGGAGAG---TTTGAATTTGGAATGTAGACATTTTGTAAACAGGTTCAGAGAAGTAACTGCCCAC--CGT-CCTCCCCACTGTGG s panTro4.chr1 224881497 249 + 228333871 AGTTTCTCTATTTTCTTTGTACACTGAATTCTAAACTCTCAGTTGGGAGATTCTGCCAATTAAACACTCTTTGCAGTCTCCTACCTCTGCTACCTGGGCTTGC----TTGATGCTGGGTGATGAACCACCCAGGTACCTACACAACCCCCTGGTTGTCAGCAGTGGCAGTGGAAAGGAGAG---TTTGAATTTGGAATGTAGACATTTTGTAAACAGGTTCAGAGAAGTAACTGTCCAC--CAC-CCTCCCCACTGTGG i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16847335 249 - 229590362 AGTTTCTCTATTTTCTTTGTACACTGAATTCTAAACTCTCAGTTGGGAGATTCTGCCAATGAGACACTCCTTGCAGTCTCCTACCTCTGCCACCTGGGCTTGC----TTGATGCTGAGTGATGCACCACCCAAGTGTCTACACAACCCCCTGGTTGTCAGCAGTGGCAGTGGAAAGGAGAG---TTTGAATTTGGAATGTAGACATTTTGTAAACAGGCTCAGAGAGGTAACTGTCCAC--CAT-CCTCCCCACTGTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223607992 249 - 227556264 AGTTTCTCTATTTTCTTTGTACACTGAATTCTAAACTCTCAGTTGGGAGATTCTGCCAATGAGACACTCCTTGCAGTCTCCTACCTCTGCCACCTGGGCTTGC----TTGATGCTGAGTGATGCACCACCCAAGTGTCTACACAACCCCCTGGTTGTCAGCAGTGGCAGTGGAGAGGAGAG---TTTGAATTTGGAATGTAGACATTTTGTAAACAGGCTCAGAGAGGTAACTGTCCAC--CAT-CCTCCCCACTGTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16658656 252 - 220367699 agtttctctattttctttgtaCACTGAATTCT-AACTCTCAGTT-GGAGATTCTGCCAATGAGACACTCCTTGCAGTCTCctacctctgccacctgggcttgCTCCTTTCATGCTGGGTGATGCACCACCCAAGTGCCTACACAACCCCCTGGTTGTCAGCAGTGGCAGTGGAAAGGAGAG---TTTGAATTTGGAATGTAGACATTTTGTAAACAGGCTTAGAGAGGTAACTGTCCAC--CATCCCTCCCCACTGTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82458152 249 + 85787240 AGTTTCTCTATTTTCTTTGTACACTGAATTCTAAACTCTCAGCTGGGAGATTCTGCCAATGAGACACTCCTTGCAGTCTCCTACCTCTGCCACCTGGGCTTGC----TTGATGCTGAGTGATGCACCACCCACGTGCCTACACAACCCCCTGGTTGTCAGCAGTGGCAGTGGAAAGGCGAG---TTTGAATTTGGAATGTAGACATTTTGTAAACAGGCTCAGAGAGGTAACTGTCCAC--CCT-CCTCCCCACTGTGG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178727499 215 + 195471971 AGTTCCTTTGTTTTCTGTGTCCACTGAAGACTAACCCTCCTGGCCAGAGATTGTTCT-------TCCTCCCTGCAG-----------GGTGACCAGGGCTGAT----------------------CCCTTCAAATAG-TAC-CAATCCCTCGATTGGCAGCAGTGCCACTAAGGGGGGGGGCCATGTTACCTGGGGACACAGACA-TCTGTTAACAGTCTCAGAGAAGTGCCTGTCCACAGCAG-CCTTTCCTCTGTAG i mm10.chr1 I 35 I 346 e canFam3.chr7 36305717 11 + 80974532 I e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M e ponAbe2.chr1 226237723 4298 - 229942017 M a score=11325.000000 s hg38.chr1_KI270759v1_alt 130769 8 + 425601 TGTGCAAA s panTro4.chr1 224881746 8 + 228333871 TGTGCAAA i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16847584 8 - 229590362 TGTGCAAA i rheMac3.chr1 C 0 I 29 s macFas5.chr1 223608241 8 - 227556264 TGTGCAAA i macFas5.chr1 C 0 I 17 s papAnu2.chr1 16658908 8 - 220367699 TGTGCAAA i papAnu2.chr1 C 0 I 17 s chlSab2.chr25 82458401 8 + 85787240 TGTGCAAA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178727714 346 + 195471971 I e canFam3.chr7 36305717 11 + 80974532 I e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M e ponAbe2.chr1 226237723 4298 - 229942017 M a score=2814.000000 s hg38.chr1_KI270759v1_alt 130777 6 + 425601 GCtaaa s panTro4.chr1 224881754 6 + 228333871 GCtaaa i panTro4.chr1 C 0 C 0 s macFas5.chr1 223608266 6 - 227556264 GCTGAC i macFas5.chr1 I 17 I 6 s papAnu2.chr1 16658933 6 - 220367699 GCTGAC i papAnu2.chr1 I 17 I 6 s chlSab2.chr25 82458409 6 + 85787240 CCtgaa i chlSab2.chr25 C 0 C 0 e mm10.chr1 178727714 346 + 195471971 I e canFam3.chr7 36305717 11 + 80974532 I e calJac3.chr19 14138211 11 - 49578535 I e rheMac3.chr1 16847592 29 - 229590362 I e nomLeu3.chr5 140130431 1778 - 143122389 M e ponAbe2.chr1 226237723 4298 - 229942017 M a score=175390.000000 s hg38.chr1_KI270759v1_alt 130783 140 + 425601 gagctgactcatgtgatcgtgggggttggcaagtccaaaatcggcatggctggagattccagcaggagttgatgttgcagcctggagtccagaggcagtcttaaggccttcaactgattggatgaggcccacccacatga s panTro4.chr1 224881760 140 + 228333871 gagctgactcatgtgatcgtgggggttggcaagtccaaaatcggcatggctggaaattccagcaggagttgatgttgcagcctggagtccagaggcagtcttaaggccttcaactgattggatgaggcccacccacatga i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16847621 139 - 229590362 GTGCtgactcatgtgattgtgggggttggcaagtccaaaatcggtacggctagcaattccagcaggagttaatgttgcagccttgggtccagagg-agtcttaaggccttcagctgattgggtgaggcctacccacacga i rheMac3.chr1 I 29 C 0 s macFas5.chr1 223608278 139 - 227556264 GTGCtgactcatgtgattgtgggggttggcaagtccaaaatcggtacggctagcaattccagcaggagttaatgttgcagccttgggtccagagg-agtcttaaggccttcagctgattgggtgaggcctacccacacga i macFas5.chr1 I 6 C 0 s papAnu2.chr1 16658945 139 - 220367699 GTGCTGACTCATGTGATTGTGGGGgttggcaagtccaaaatcacCACGGCTAGCAATTTCAGCAGGAGTTAATGTTGCAACCTTGGGTCCAGAGG-AGTCTTaaggccttcagctgattggGTGAGGCCTACCCACACGA i papAnu2.chr1 I 6 C 0 s chlSab2.chr25 82458415 140 + 85787240 gagctgactcatgtgatcgtgggggttggcaagtccaaaatcggcacagctagcaattccagcaggagttgatgttgcaaccttgagtccagaggcagtcttaaggccttcaactgattggatgaggcctacccacacga i chlSab2.chr25 C 0 C 0 e mm10.chr1 178727714 346 + 195471971 I e canFam3.chr7 36305717 11 + 80974532 I e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M e ponAbe2.chr1 226237723 4298 - 229942017 M a score=375074.000000 s hg38.chr1_KI270759v1_alt 130923 239 + 425601 atggagggtaatctgcttttctcagagtctactgactttaagtgttaatatcatct-agtaaataccttcacaacaacatctagactagtatttgacaaaacaactggacaccgtagcctagccaagtt-gacacataaaattcatcacCTCAAGAATCAGCACTAGGTTTAACATGAAAACAACTTGTATTTAGTGCAATTTATCAAGTGCA----TATTGAGACTGGCTGAGGTTCTTCCTGG s panTro4.chr1 224881900 239 + 228333871 atggagggtaatctgcttttctcagagtctactgactttaagtgttaatatcatct-agtaaataccttcacaacaacatctagactagtatttgacaaaacaactggacaccgtagcctagccaagtt-gacacataaaattcatcacCTCAAGAATCAGCACTAGGTTTAACATGAAAACAACTTATATTTAGTGCAATTTATCAAGTGCA----TATTGAGACTGGCTGAGGTTCTTCCTGG i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16847760 239 - 229590362 atggaaggtaatctgcttttctcagagtctactgactttaagtgttaatatcatct-agtaaataccttcacaacaacatctagactagtatttgaccaaacaactggacaccatagcctagccaagtt-aacacataaaattcaccacctcaAGAATCAGCGCTAGGTTTAACATGAAAACAACTTGTATTTAGTGCAGTTTATCAAGTGCA----TATTGAGACTGGCTGAGGTTCTTCCTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223608417 239 - 227556264 atggaaggtaatctgcttttctcagagtctactgactttaagtgttaatatcatct-agtaaataccttcacaacaacatctagactagtatttgaccaaacaactggacaccatagcctagccaagtt-aacacataaaattcaccacctcaAGAATCAGCGCTAGGTTTAACATGAAAACAACTTGTATTTAGTGCAGTTTATCAAGTGCA----TATTGAGACTGGCTGAGGTTCTTCCTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16659084 239 - 220367699 ATGGAAGGTAATCTGCTTTTCTCAGAGTCTACTGACTTTAAGTGTTAATATCATCT-AGTAAATACCTTCACAACAACATCTAGACTAGTATTTAACCAAACAACTGTACaccatagcctagccaagtt-gacacataaaatttaccacctcAAGAATCAGCGCTAGGTTTAACATGAAAACAACTTGTATTTAGTGCAGTTTATCAGGTGCA----TATTGAGACTGGCTGAGGTTCTTCCTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82458555 239 + 85787240 atggaaggtaatctgcttttctcagagtctactgactttacatgttaatatcatct-agtaaataccttcacaacaacatctagactagtatttgaccaaacaactggacaccatagcctaaccaagtt-gacacataaaattcaccacctcaAGAATCAGCGCTAGGTTTAACATGAAAACAACTTGTATTTAGTGCAGTTTATCAGGTGCA----TATTGAGACTGGCTGAGGTTCTTCCTGG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36305728 233 + 80974532 atggagggtaatacgctttactcagaatctgttgatttcaa-tgtcagtcacatctaaaaaaacaccttccctggaacatgtagactgtggtttggccaaacgagtgggcaccattgcctagccaagttggacaccaaaa-----------ctaaAAACAGCACTGAGTTTAGCTGGAAAGAACTGTCCATTCCATGCAGTTCATCATGTGGATGTGTGTGGAGACTCGCTGAGGCTGCTCCTAG i canFam3.chr7 I 11 I 14 e mm10.chr1 178727714 346 + 195471971 I e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M e ponAbe2.chr1 226237723 4298 - 229942017 M a score=238135.000000 s hg38.chr1_KI270759v1_alt 131162 209 + 425601 AACTTACTtctctctctcac-----tttctccctctcttttttttttttttttttgt----gagtcttgctctgttgtccaggttggagtgcagtggcatgacctcagctcactgcaacctccacctcctgggttcaagtgattctcctgcctcaacctcccaagtagctgggattacaggcacgtgccaccatgcctggctaatttttgtaatttta s panTro4.chr1 224882139 213 + 228333871 AACTTACTTCTCTCTCTCAC-----TTTCTCCCTCTCttttgtttttttttttttgtgagagagtcttgctctgttgtccaggttggagtgcagtggcatgatctcagctcactgcaacctccacctcctgggttcaagtgattctcctgcctcaacctcccaagtagctgggattacaggcacgtgccaccatgcctggctaatttttgtaatttta i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16847999 201 - 229590362 AACTTGTTTCTTTCTCTCGC-----------------ttttttttttttttctttgagacagggtcttactctgttgcccaggctggagtgcagtggtataatctcagcgcactgcaacctccatctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacagccacgtgccaccatgcctggcaattttttataatttta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223608656 202 - 227556264 AACTTGTTTCTTTCTCTCGC----------------tttttttttttttttttttgagacagggtcttactctgttgcccaggctggagtgcagtggtataatctcagctcactgcaacctccatgtcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacagccacgtgccaccatgcctggcaattttttataatttta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16659323 218 - 220367699 AACTTGtttctttctctcgctttttctttttcttttttctttttttttttttcttgagacagggtctcactctgtcgcccagggtggagtgcagtggtataatctcagctcactgcaacctccatctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacgtgccaccatgcctggctaatttttgtaatttta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82458794 206 + 85787240 AACTTGTTTCTTTCTCTCGC------------TCttttttttttttttttttttggagacagagtttcactctgtcgcccaggctggagtgcagtggtacaacctcagctcactgcaacctccatctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacgtgccactatgcctggctaatttttgtaatttta i chlSab2.chr25 C 0 C 0 e mm10.chr1 178727714 346 + 195471971 I e canFam3.chr7 36305961 14 + 80974532 I e calJac3.chr19 14138211 11 - 49578535 I e nomLeu3.chr5 140130431 1778 - 143122389 M e ponAbe2.chr1 226237723 4298 - 229942017 M a score=222230.000000 s hg38.chr1_KI270759v1_alt 131371 118 + 425601 gtagagatgggattccgccatgttgcccaggctggtctcaaactgatggcctcaagtgatctgccagccttggcctcccaaagtgctgggattacaggcatgagccaccgcacctggc s panTro4.chr1 224882352 118 + 228333871 gtagagatgggattttgccatgttgcccaggctggtctcaaactgatggcctcaagtgatctgccagccttggcctcccaaagtgctgggattacaggcatgagccaccacacctggc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140132209 118 - 143122389 gtagagatgggatttcaccatgttgcccaggctggtctcaaactgatggcctcaagtgatctgccagccttggcctcccgaagtgctgggatgacaggcgtgagccaccgcacctgtc i nomLeu3.chr5 M 1778 C 0 s rheMac3.chr1 16848200 118 - 229590362 ctagagatggggtttcgccatgttgcccaggctggtctcaaactgatggcctcaagtgatctgccagccttggcctcccaaagtgttgggattacaggcgtgagccaccgcacctggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223608858 118 - 227556264 ctagagatggggtttcgccatgttgcccaggctggtctcaaactgatggcctcaagtgatctgccagccttggcctcccaaagtgttgggattacaggcgtgagccaccgcacctggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16659541 118 - 220367699 ctagagatggggttttgccatgttgcccaggctggtctcaaactgatggcctcaagtgatctgccagccttggcttcccaaagtgttgggattacaggcatgagccaccgcacctggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82459000 118 + 85787240 ctagagatggggtttcaccatgttgctcaggctggtctcaaactgatggcctcaagtgatctgccagccttggcctcccaaagtgttgggattacaggcgtgagccaccgcacctggc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178727714 346 + 195471971 I e canFam3.chr7 36305961 14 + 80974532 I e calJac3.chr19 14138211 11 - 49578535 I e ponAbe2.chr1 226237723 4298 - 229942017 M a score=37325.000000 s hg38.chr1_KI270759v1_alt 131489 19 + 425601 cCCTGGAACTTATTTGTTA s panTro4.chr1 224882470 19 + 228333871 cCCTGGAACTTATTTGTTA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140132327 19 - 143122389 cCGTGGAACTTATTCGTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16848318 19 - 229590362 cCCTGGAACTTATTTGTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223608976 19 - 227556264 cCCTGGAACTTATTTGTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16659659 19 - 220367699 ccctggAACTTATTTGTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82459118 19 + 85787240 cCCTGGAACTTATTTGTTC i chlSab2.chr25 C 0 C 0 s mm10.chr1 178728060 19 + 195471971 CTCCTGACTTTATTTCTTA i mm10.chr1 I 346 C 0 e canFam3.chr7 36305961 14 + 80974532 I e calJac3.chr19 14138211 11 - 49578535 I e ponAbe2.chr1 226237723 4298 - 229942017 M a score=3387122.000000 s hg38.chr1_KI270759v1_alt 131508 1494 + 425601 GTATTCA----GGCTACTGAG-GTGTTGCACCTGCAGACTCTCAGGT-----GGCACTCA-CCCATTCTCTCT---CTCTGCCGAGCTCCCGTGTTCCATCCTTTGTTCCTCAGTGTCCCCACCTGTTAACGTGTTGAATGTAATCCCCGTGTCTTTTGGATAAATCAGAGAATCCCATATCATTTGTTACTTAGGATCCTGAGCATTCAGTTTTAGCTTTCACACTAAAGATAGAGAAAATAAAAATAGATACCATTAATCTTTACACTTCTCCTGTGGTCCTGATTGCCAACCATAGTCTGAAAGATCTGCAGTGGATTTATTACTTTGCATGTTCTTTATTTCCTTTAAACCCGGGCGTGTGAGGAACGTTGATTTATGGAGCCTAGATCATGCTTGGCTGGGGAATGGGAGGAGGGAAGCAAAGTGTTGTTCAAGCTGCAGTAAATTTAAACATCACTAGTATTTCTTTACACATGCAAGGGGGAAAAG---TCCTAAC--TTAAGTCCATTGCTACAGGAGCTCATAAATT----AAAAATAACAAGACTATTTCCTATACACCTGGAGCTTCAAAATTACATGCCGTTA-ATTCTTTGATTGCCCCCTTCACAAAAGAGCCATTGAG--GGTGACAACTCAAACAAGATCTC-C-ACCACAGCCGTGAAATCCAATCAGTGATTCACCTTGTGTC-TTTGACCT---TG------------------TTCAAGAT----------AAGGAAGTGACTTGTCTGAAACATAGACTCTAAGAATTTAGTCCCATTAT--TTTTTTCCTCAAACTTTtccctctcat------------tactctcttctctct-ctctc-ctctctcgtt----ttattttt-------tctAATTTTACATAAATTTTAAAACAAATCTAACAGCATCAGAAGACCAAAACACA---------GGAAAGTCTTCTTGACTTTCCACTATGTTCTGAGCCATAAATCCTTTCGTGTGCTCAAATAATACACCCCAGCTGGTCTGTTGGA-TGAATTTGGTTAGCCTCTTAAATGTTTTAGCACCTGTACACCACAGAGCTCCCAAAAGCGAGGAAATTATGTTTCCTCCTGTCCCCAACGGATTGCTTTTCACCTGGGCCATATAGCTGCTGTGTGCCACTTTAC---AGAGGTTAAGACTGAGCAGTCCTGGAGGACACAGAAAGCTCTAAAGAAGTACAGACACAACTTCAAGTCCTCATATATTTTACTTCTTCATCTTGTTCTTTGAGAACTACGTTTAC--------TTTCTTTGAGAAAATGC----ATAAAGGAGAAAGAGAGGATATACTTTATTTTGATTTTTAG---AGAACCTT---GAAAGTGTCATGCCAGAAGCGGTGGAATTGAGTTTTCACTCTTataccacccagacctttcact-ctaggtatataccaaagaaaaatgaaacgaaggcgtttgttcacgtcgagacttgcccgtgaatgttcatggcagtgttattcatcaaagcccccaaaa--tgtaaactacccaaatatccaccaactgataaatgaatagacaaaaaaaac----------------atg-gatg-tccattcag s panTro4.chr1 224882489 1494 + 228333871 GTATTCA----GGCTACTGAG-GTGTTGCACCTGCAGACTCTCAGGT-----GGCACTCA-CCCATTCTCTCT---CTCTGCCGAGCTCCCATGTTCCATCCTTTGTTCCTCAGTGTCCCCACCTGTTAACGTGTTGAATGTAATCCCCATGTCTTTTGGATAAATCAGAGAATCCCATATCATTTATTACTTAGGATCCTGAGCATTCAGTTTTAGCTTTCATACTAAAGATAGAGAAAATAAAAATAGATACCATTAATCTTTACACTTCTCCTGTGGTCCTGATTGCCAACCATAGTCTGAAAGATCTGCAGCAGATTTATTACTTTGCATGTTCTTTATTTCCTTTAAACCCAGGTGTGTGAGGAACGTTGATTTATGGAGCCTAGATCATGCTTGGCTGGGGAATGGGAGGAGGGAAGCAAAGTGTTGTTCAAGCTGCAGTAAATTTAAACATCACGAGTATTTCTTTACACATGCAAGGGGGAAAAG---TCCTAAC--TTAAGTCCATTGCTACAGGAGCTCATAAATT----AAAAATAACAAGACTATTTCCTATACACCTGGAGCTTCAAAATTACATGCCCTTA-ATTCTTTGATTGCCCCCTTCACAAAAGAGCCATTGAG--GGTGACAACTCAAACAAGATCTC-C-ACCACAGCCGTGAAATCCAAACAGTGATTCACCTCGTGTC-TTTGACCT---TG------------------TTCAAGAT----------AAGGAAGTGACTTGTCTGAAACATAGACTCTAAGAATTTAGTCCCATTAT--TTTTTTCCTCAAACTTTTCTCTCTCAT------------TACTCTCTTCTCTC--CTCTCTCTTTCTTGTT----TTATTTTT-------TCTAATTTTACATACATTTTAAAACAAATCTAACAGCATCAGAAGACCAAAACACA---------GGAAAGTCTTCTTGACTTTCCACTATGTTCTGAGCCATAAATCCTTTCGTGTGCTCAAATAATACACCCCAGCTGGTCTGGTGGA-TGAATTTGGTTAGCCTCTTAAATGTTTTAGCACCTGTACACCACAGAGCTCCCAAAAGCGAGGAAATTATGTTTCCTCCTGTCCCCAGCGGATTGCTTTTCACCTGGGCCATATAGCTGCTGTGTGCCACTTTAC---AGAGGTTAAGACTGAGCAGTCCTGGAGGACGCAGAAAGTTCTAAAGAAGTACAGACACAACTTCAAGTCCTCATATATTTTACTTCTTCATCTTGTTCTTTGAGAACTACCTTTAC--------TTTCTTTGAGAAAATGC----ATAAAGGAGAAAGAGAGGATATACTTTATTTTGATTTTTAG---AGAACCTT---AAAAGTGTCATGCCAGAAGTGGCGGAATTGAGTTTTCACTCTTataccacccagacctttcact-ctaggtatataccaaagaaaaatgaaacgaaggcgtttgttcacgtcgagacttgcccgtgaatgttcatggcagtgttattcatcaaagcccccaaaa--tggaaactacccaaatatccaccaactgataaatgaatagacaaaaaaaac----------------atg-gatg-tccgttcag i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140132346 1494 - 143122389 GTATTCA----GGCTACTGAG-GTGTTGCACCTGCAGACTCTCAGGT-----GGCGCTCA-CCCATTCTCTTT---CTCTGCCGAGCTCCCATGTTCCATCCTTTGTTCCTCAGTGTCTCCACCTGTTAACGTGTTGAATGTAATCCCCGTGTCTTTTGGATAAATCAGAGAATCCCATATCATTTATTACTTAGGATCCTGAGCATTCAGTTTTAGCTTTCACACTAAAGATAGAGAAAATAAAAATAGATACCATTAATCTTTACACTTCTCCTGTGGTCCTGATTGCCAACCATAGTCTGAAAGATCTGCAGCGGATTTATTACTTTGCATGTTCTTTATTTCCTTTAAACCCGGGCATGTGAGGAACGTTGATTTATGGAGCCTAGATCATGCTTGGCTGGGGAATGGGAGGAGGGAAGCAAAGTGTTGTTCAAGCTGCAGTAAATTTAAACATCACTAGTATTTCTTTACACATGCAGGGGGGAAAAA---TCCTAAC--TTAAGTCCGTTGCTACAGGAGCTCATAAATT----AAAAATAACAAGACTATTTCCTATACACCTGGAGCTTCAAAATTACATGCCGTTA-ATTCTTTGATTGCCCCCTTCACAAAAGAGCCATTGAG--GGTGACAACTCAAACAAGATCTC-C-ACCACAGCCGTGAAATCCAAACAGTGATTCACCTCGTGTC-TTTGACCT---TG------------------TTCAAGAT----------AAGGAAGTGACTTGTCTGAAACATAGAATCTAAGAATTTAGTCCCATTAT--TTTTTTCCTCAAActtttctctctcat------------tactctcttctctgt-ctctc-ctctctctttcttgtttttttt-------tttAATTTTACATAAATTTTAAAACAAATCTAACAGCATCAGAAGAACAAAACACA---------GGAAAGTCTTCTTGACTTCCCACTATGTTCTGAGCCATAAATCCTTCCGTGTGCTCAAATAATACACCCCAGCTGGGCTGGTGGA-TGAATTTGGTTAGCCTCTTAAATGTTTTATCACCTGTACACCACAGAGCTCCCAAGAGCGAGGAAATTATGTTTCCTCCTGTCCCCAGTGGATTGCTTTTCACCTGGGCCATATAGCTGCTGTGTGCCACTTTAC---AGAGGTTAAGACTGAGCAGTCCTGGAGGACACAGAAAGTTCTAAAGAAGTACAGACACAACTTCAAGTCTTTATATATTTTACTTCTTCATCTTGTTCTTTGAGAACTACGTTTAC--------TTTCTTTGAGAAAATGC----ATAAAGGAGAAAGAGAGGATATACTTTATTTTGATTTTTAG---AGAACCTT---AAAAGTGTCACGCCAGTAGCGGCAGAATTGAGTTTTCACTCTTataccacccagacctttcact-ctaggtatataccaaagaaaaatgaaatgaaggcatttgttcacgtcgagacttgcccgtgaatgttcatggcagtgttattcatcaaagctcccaaaa--tggaaactacccaaataaccaccaactgataaatgaatagac----aaaac----------------atg-gatg-tccgttcag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16848337 1493 - 229590362 GTATTCA----GGCTACTGAG-GTGTTGCACCTGCAGACTCCCGGGT-----GGTGCTCA-CCCATTCTCTC----CTCTGCCAAGCTTCCTTCTTCCATCCCTTGTTCCTCAGTGTCCCCATCTGTTAACATGTTGAATGTAATCCCCATGTCTTTTGGATAAATCAGAGAATCCCACATCACTTATTATTTAGGATCCTGAGCATTCGGTTTTGGCTTTCACACTAAAGATAGAGAAAGTAAAAATAGATACCATTAATCTTTACGCTTCTCCTGTGGTGCTGATTGCCAACCATAGTCTGAAAGATCTGTGGCGGATTTATTACTTTGCATGTTCTTTATTTTCTTTAAACCCGGGCATGTGAGGAACGTTGATTTATGGAGCCTAGATCATGCTTGGCTGGGGAATGGGAGGAGGGAAGCAAAGTGTTGTTCAAGCTGCAGTAAATTTAAACATTACTAGTATTTCTTTACACAGGCAGGGGGGAGAAA---TCCTAAC--TTAAGTCTATTGCTACAAGAGCTCATAAATT----AAAAATAACAAGATTATTTCCTATACACCTGGAGCTTCAAAATTACATGCCGTTA-ATTCTGTGATCGCCCCTTTCACAAAAGAGCCATTGAG--GGTGACAACTCAAACAAGATCTC-C-ACCACAGCCGTGAAATCCAAACAGTGATTCACCTCTTGTC-TTTGACCT---TG------------------TTCAAGAT----------AAGGAAGTGACTTGTCTGAAACAGAGAATCTAAGAATTTAGCCCCATTGTA-TTTTTTCCTCGAACTTTTCTCTCTCAT------------TACTCTCTTCTCTCTCCTCTCACTTTCTTGTT----TTATTTTT-------TCTAATTTTACATAAATTTTAAAACAAATCTAACAGCATCAGAAGACC-AAACGCA--------GGGAAGGTCTTCTTGACGTCCCACTACGTTCTGAGCCATAAATCCTGCCGCGTGCTCAAATAATACACTGCAGCTGGGCTGGTGGA-TGAATTTGGTGAGCCGTTTAAATGTTTTGGCACCTGCACACCACAGAGCTGCCAGGAGTGAGGAAATCATGTTTCCTCCTGTCCCCCCCAGACTGCTTTTCACCTGGGCCACGTAGCTGCTGTGTGCCGCTTTAC---AGAGGTTAAGACCGAGCAGTCCTGGAGGATAAAGAAAGTTCTAAAGAAGTACAGTCACAACTTCAAGTCTTCATATATTTTACTTCTTCATCTTGTTTTTTGAGAACTACCCTTAC--------TTTTTTTGACAAAATGC----GTAAAGGAGAAAGAGAGGATGTACTTTATTTTGATTTTTAG---AGAACCTT---AAAAGTGTCATGCCAGAAGCGGGGGAATTGAGTTTTCACTCTTACACCacccagacctttcactcctaggtacgtaccaaagaaaaatgaaacgaaggcatttgttcatgtcgagacttgcccgtgaatgttcgtggcactgttattcagcaaagcccccaaaa--tggaaacttcccaaatatccaccaactggtagatgaatagac----aaaac----------------atg-gatg-tccgttcag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223608995 1493 - 227556264 GTATTCA----GGCTACTGAG-GTGTTGCACCTGCAGACTCCCGGGT-----GGTGCTCA-CCCATTCTCTC----CTCTGCCAAGCTTCCTTCTtccatcccttgttcctcagtgtccccatctgttaacatgtggaatgtaatccccatgtcttttggataaaTCAGAGAATCCCACATCATTTATTATTTAGGATCCTGAGCATTCGGTTTTGGCTTTCACACTAAAGATAGAGAAAGTAAAAATAGATACCATTAATCTTTACGCTTCTCCTGTGGTGCTGATTGCCAACCATAGTCTGAAAGATCTGTGGCGGATTTATTACTTTGCATGTTCTTTATTTTCTTTAAACCCGGGCATGTGAGGAACGTTGATTTATGGAGCCTAGATCATGCTTGGCTGGGGAATGGGAGGAGGGAAGCAAAGTGTTGTTCAAGCTGCAGTAAATTTAAACATTACTAGTATTTCTTTACACAGGCAGGGGGGAGAAA---TCCTAAC--TTAAGTCTATTGCTACAAGAGCTCATAAATT----AAAAATAACAAGACTATTTCCTATACACCTGGAGCTTCAAAATTACATGCCGTTA-ATTCTGTGATCGCCCCTTTCACAAAAGAGCCATTGAG--GGTGACAACTCAAACAAGATCTC-C-ACCACAGCCGTGAAATCCAAACAGTGATTCACCTCTTGTC-TTTGACCT---TG------------------TTCAAGAT----------AAGGAAGTGACTTGTCTGAAACAGAGAATCTAAGAATTTAGCCCCATTATA-TTTTTTCCTCGAACTTTtctctctcat------------tactctcttctctctcctctcactttctTGTT----TTATTTTT-------TCTAATTTTACATAAATTTTAAAACAAATCTAACAGCATCAGAAGACC-AAACGCA--------GGGAAGGTCTTCTTGACGTCCCACTACGTTCTGAGCCATAAATCCTGCCACGTGCTCAAATAATACACCGCAGCTGGGCTGGTGGA-TGAATTTGGTGAGCCGTTTAAATGTTTTGGCACCTGCACACCACAGAGCTGCCAGGAGTGAGGAAATCATGTTTCCTCCTGTCCCCCACAGACTGCTTTTCACCTGGGCCACGTAGCTGCTGTGTGCCGCTTTAC---AGAGGTTAAGACGGAGCAGTCCTGGAGGATAAAGAAAGTTCTAAAGAAGTACAGTCACAACTTCAAGTCTTCATATATTTTACTTCTTCATCTTGTTTTTTGAGAACTACCCTTAC--------TTTTTTTGACAAAATGC----GTAAAGGAGAAAGAGAGGATGTACTTTATTTTGATTTTTAG---AGAACCTT---AAAAGTGTCATGCCAGAAGCGGGGGAATTGAGTTTTCACTCTTataccacccagacctttcactcctaggtacgtaccaaagaaaaatgaaacgaaggcatttgttcatgtcgagacttgcccgtgaatgttcgtggcactgttattcagcaaagcccccaaaa--tggaaacttcccaaatatccaccaactggtagatgaatagac----aaaac----------------atg-gatg-tccgttcag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16659678 1493 - 220367699 GTATTCA----GGCTACTGAG-GTGTTGCACCTGCAGACTCCCGGGT-----GGTGCTCA-CCCATTCTCTC----CTCTGCCAAGCTTCCTTCTTCCATCCCTTGTTCCTCAGTGTCCCCACCTGTTAACATGTTGAATGTAATCCCCGTGTCTTTTGGATAAATCAGAGAATCCCACATCATTTATTACTTAGGATCCTGAGCATTCGGTTTTAGCTTTCACACTAAAGACagagaaagtaaaaatagataCCGTTAATCTTTACGCTTCTCCTGTGGTGCTGATTGCCAACCATAGTCTGAAAGATCTGTGGCGGATTTATTACTTTGCatgttctttatttcctttaaaccCGGGCATGTGAGGAACGTTGATTTATGGAGCCTAGATCATGCTTGGCTGGGGAATGGGAGGAGGGAAGCAAAGTGTTGTTCAAGCTGCAGTAAATTTAAACATCACTAGTATTTCTTTACACATGCAGGGGGGAGAAA---TCCTAAC--TTAAGTCTATTGCTACAAGAgctcataaatt----aaaaataacaagactATTTCCTATACACCTGGAGCTTCAAAATTACATGCCGTTA-ATTCTGTGATCGCCCCTTTCACAAAAGAGCAATTGAG--GGTGACAACTCAAACAAGATCTC-C-ACCACAGCCGTGAAATCCAAACAGTGATTCACCTCGTGTC-TTTGACCT---TG------------------TTCAAGAT----------AAGGAAGTGACTTGTCTGAAACAGAGAATCTAAGAATTTAGCcccattatatttttttcctcgaacttttctctctcat------------tactctcttctctctcctctcactttcttgtt----ttattttt-------tctaattttacataaattttaaaacaaatctaaCAGCATCAGAAGACC-AAATAca---------ggaaagtcttcttgacgtCCCACTACGTTCTGAGCCATAAATCCTGCCGCGTGCTCAAATAATACACCGCAGCTGGGCTGGTGGA-TGAATTTGGTGAGCCGTTTAAATGTTTTGGCACCTGCACACCACAGAGCTGCCAAGAGTGAGGAAATCATGTTTCCTCCTGTCCCCCACAGACTGCTTTTCACCTGGGCCACGTAGCTGCTGTGTGCCGCTTTAC---AGAGGTCAAGACCGAGCAGTCCTGGAGGATAAAGAAAGTGCTAAAGAAGTACAGTCACAACTTCAAGTCTTCACATATTTTACTTCTTCATCTTGTTTTTTGAGAACTACCCTTGC--------tttttttGACAAAATGc----gtaaaggagaaagagaggatgtactttattttgatttttag---agaaCCTT---AAAAGTGTCATGCCAGAAGCGGGGGAATTGAGTTTTCACTCTTACACCACCCAGACCTTTCACTCCTAGGTACgtaccaaagaaaaatgaaacgaAGGCATTTGTTCATGTCGAGATTTGCCCGTGAATGTTCGTGGCACTGTTATTCAGCAAAGCCCCCAAAA--TGGAAACTTCCCAAATATCCACCAACTGGTAGATGAATAGAC----AAAAC----------------ATG-GATG-TCCGTTCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82459137 1493 + 85787240 GTATTCA----GGCTACTGAG-GTTTTGCACCTGCAGACTCCCGGGT-----GGTGCTCA-CCCATTCTCTC----CTCTGCCAAGCTTTCTTCTTCCATCCCTTGTTCCTCAGTGTCCCCACCTGTGAACATGTTGAATGTAATCCCCGTGTCTTTTGGATAAATCAGACTATCCCACATCATTTATTACTTAAGATCCTGAGCATTCGGTTTCAGCTTTCACACTAAAGATAGAGAAAGTAAAAATAGATACCGTTAATCTTTACGCTTCTCCTGTGGTGCTGATTGCCAACCATAGTCTGAAAGATCTGTGACGGATTTATTACTTTGCATGTTCTTTATTTCCTTTAAATCCGGGCATGTGAGGAACGTTGATTTATGGAGCCTAGATCATGCTTGGCTGGGGAATGGGAGGAGGGAAGCAAAGTGCTGTTCAAGCTGCAGTAAATTTAAACATCACTAGTATTTCTTTACACATGCAGGGGGGAGAAG---TCCTAAC--TTAAGTCTATTGCTACAAGAGCTCATAAATT----AAAAATAACAAGACTGTTTCCTATACACCTGGAGCTTCAAAATTACATGCCGTTA-ATTCTGTGATCGCCCCTTTCACAAAAGAGCCATTGAG--GGTGACAAGTCAAACAAGATCTC-C-ACCACAGCCGTGAAATCCAAACAGTGATTCACCTCGTGTC-TTTGACCT---TG------------------TTCAAGAT----------AAGGAAGTGACTTGTCTGAAACAGAGAATCTAAGAATTTAGCCCCATTATATTTTTTTCCTCGAACTTTtctctctcat------------tactctcttctctctcctctcactttctTGTT----TTATTTTT-------TCTAATTTTACATAAATTTTAAAACAAATCTAACAGCATCAGAAGACC-AAACACA---------GGAGAGTCTTCTTGACTTCCCACTACATTCTGAGCCATAAATCCTGCTGCGTGCTCAAATAATACACCCCAGCTGGGCTGGTGGA-TGAATTTGGTGAGCCGTTTAAATGTTTTGGCACCTGCACACCACAGAGCTCCCAAGAGTGAGGAAATCATGTTTCCTCCTGTCCCCCACAGACTGCTTTTCACCTGGGccatgtagctgctgtgtgccgctttac---agaggtcaagaccaagcagtcctggaggataaagaaagttctaaagaagtacagtcacaacttcaaGTCTTCATATATTTTACTTCTTCATCTTGTTTTTTGAGAACTGCCCTTAC--------TTTTTTTGACAAAATGC----GTAAAGGAGAAAGAGAGGATATACTTTATTTTGATTTTTAG---AGAACCTT---AAAAATGTCATGCCAGAAGGAGGGGAATTGAGTTTTCACCCTTataccacccagacctttcactcctaggtacgtaccaaagaaaaatgaaacgaaggcatttgttcatgtcgagacttgcccgtgaatgttcatggcactgttattcagcaaagcccccaaaa--tggaaacttcccaaatatccaccaactggtagatgaatagac----aaaac----------------atg-gatg-tccattcag i chlSab2.chr25 C 0 C 0 s mm10.chr1 178728079 1391 + 195471971 GAAGTCACTCTGGCTGTTGAG-GTG--ACACCTGCTGGTCCTCAGGT-----AGAATTTATCTCAGACCCTCTGGGCTTAACCAG-------TCTTCTAGACCTCATTCCTCA-CATCCTCTCC--TTGACAGTGGTAGCCCAACCCTCAAGCCGTTTGAGTAAGTT-GTGTATCTCCTATTGCACACTCCTTGAGATGATGAGCGTTTGGTTTTGGCTTTTATAGTAGAGACAGAGAGCATAAGACTAGATGCCATGCCTCTTTCTGCCTCT-CTGTGGTACCGACTGCCAACCGCAGTCCCAGATACCTGTTGTGGATTTACTACTTTGCATGTTCTCTGTTTCCGTTCAACATAGGC-CATGAAGAGGCCTGATTTATGGAGC--------TATGTGGTTGAGG-GTGGGAGCAGGGAAGCAAAGGGCTGTTCCAGCTGCAGTAAATTTAAGCATCACTGGTATTTCTTTACACATCTGGAGGGG----T---TCCTGGCGAGTGAGTGTATTGCCACAGGAGCTCATAAATT----AAAAATAACAAGACTATTTCCTTTACACCTGGAGCTTCAAAATTACCACCCGTTATATTCTGTGATGG-CCCTTTCACAAAAGAGGCATTGAG--GGCGACAGCCTAAACATGGTCTC-TGGCCATAGCTCT-AAATACAAGTAACTATTCACTCCAGGTCTTTTGACCT---TTGCTTTAAAAAAAAATTACTGGAAGAT----------AAGGAAAGTCATTACATGAAGCATAGA--CTGGGAATTTAATCTGCTTTT--TTTGTCCATC-----TCTCTCCCTCCT------------TCCTCTTTTATGATGTTTCAT-CCTTCTCCAT----TTTTGCTC-------AGGAGTTTTACACAAAATTTAAAACAGGTCTAAGAGCAGCAGAGA--C-AAAGCCATCCATCCAGGGACTTCCTTCTTCATT-----CTCTGTTATAAGCCATAAGTTCCACTCTGTTTGCAGATGATACGAGCCCGGTGGGCTGGTGGT-GGCACTTTG----------------ATTGGCACCTGTGTACCAGAG-----CTGATCTTAGAGAACTCCTGTTTCCTCCCCTTCCTAGGGGATTCTCTGTCTCCTGGGTCA-------GCTGTGCTCTGCTCTGCCCTAGAGCACAAAACTGAGATGGTCCGCAGGACACAGAA--------------------ACAACTTTA-----------TTTTTACTTTTTCATCTTGTCCTTTTAGAACTATGTTGAC--------ATT-TTTGGGAAAATGC----ACAAAGGGT---GGGAGGCTATGC-----------TTTTAGGCAAGGCTTTT---AAGTATGTTATAGCAGAAGCAATCAGACTGGATTTT-ACCACCATGCCACCAACAGCATTGACT--------------GGAGAGACA-----------CAGTGGTGTacgctaagatatg--catggatgttgatag-agaataagtcataaaaa---tcaaaacctggaagccttgcaaatgttctctgacagataagtaaataagc----aaaac----------------atgagatgttttatacag i mm10.chr1 C 0 C 0 s canFam3.chr7 36305975 1497 + 80974532 GTGTTCA----GGCTGCTGAGAGGGGTGCACCTGCTGGGTTTGGGGGGGGTAGGGGTGCA-C--------------ATCTGCCCG-----CAGTCTTCATTCTT--TCCTGCAGTGTCTTTGCCTGGTGACATGTCCAACTTAATCCCCATGTCTTCTGCATAAATTGGAGAATCCCATATCATTTATTACTTAAGATGCTGTGCATTTTGTTTTAGCCTTCACATTAAAGAGAGAGAAAATAAAGATAGAGATCATTAATCTTTAAGCCTCTCCTGTGGTCCCGATCGCCAACCACAGCCTCAAAGGCTGGCGGTGGACTTACCACACTGCATGTTCTTTATTTCCTTTAATGCTGAGCATGTGAGGAAAATTGATTTATGGAGCCTGGATCCTGCTT-------CAAAGCGGGGAGGGAAGCCAAGTGTTGTTCAACCTGCAGTAAATTTCAACATCACTAGTATTTCCTTACATGTCCAGGAAAAAAAAAAATTCCTAAT--TTACATCTATTGCTATAGGAACTCATAAATTAAAAAAAAAAAACAAGTCTATATCCTGTACACCTTGAACTTTAAAATCACAGTCTGTTA-A-ACTGGGATCACCTCC-ACACATAAGAGACATGAGGGTGGTGGTGGCTCAAACGGGGTCTCAC-ATCCTAGCTTTGAACCCCAAGCAGTGATTCACCTCGTGTC-TCTTGACTGTGTG------------------TTAAAGATGTCAGGATACAGGGAGTTAATTTATCTTAAGCACAGACTCTAAGAATCTGGCCCCATTAT--CTTTTTCCTGTAACCTTCCTCTTCTATTCCCATTCTTCCTATTCTCTTCTCTGGCTTCTTTCTCTCTCTTC----CTGTCTTTGTCTTTGTTTTATTTTACATAAATTTCAAAACAAGCTTCACAGCATCAGAAA--CAAAACACA---------GGAAAGTCTTCCTTGTTTTCCATTCTGTTCTGAGCCGTAAATTACTCCATGTACTCAAAT-ATACAC-ACAGGAGGGCTGGTGGGCTGAATTTGATTGA-----TAAATATTTTAGCACCTGCACACCACAGTTCTTCCAGGAGTGA-GAAATTACTTTTTCTCCTCTCCCTAAGGGACTGAGTGTCACCTGGGCCATGGAAATGCTTTGTGCCACTTTAC---AGAGGCGAAGACTGGGCAGT------GGACAAAGAAA------------TATGGGCATGAC-TCAAGACCCCATG--------------GTTTTCTTCTCTGAGAACTAAGCTTACCTTTTTTTTTTTTTTGAGAAAATGCATAAATAAAGGAGAAAGAAAGGATATACTTTATTTTGATCTTCAG---AAAGATTTTAAAAATATGTTGTACCAGAAACAGTAGAAATGATTCTCCACCatcataccacccagcccttccactcttaggtatttaccaaaga-----gcatttgaggcatacattcatgcaaagacttgcaggggaatgttcatagcaatattattaataataa-tcctaaac--tggtaataactcaaaggtctgccaactaataaatggatgaac----aaaatgtggtctctacaaacaatg-gagt-accactcag i canFam3.chr7 I 14 I 174 e calJac3.chr19 14138211 11 - 49578535 I e ponAbe2.chr1 226237723 4298 - 229942017 M a score=358785.000000 s hg38.chr1_KI270759v1_alt 133002 171 + 425601 tgagatactcttca-------gaatcctcaaacgattgctacacg---caaca---tgactgaatctca-aataatgatggtaagcgacggaaaccagatcccacctctacagatggaaggctacatatgctgtgatttcct-tcagtgcagg---atagacaatagaaactaa--tagagtgacaggaag s panTro4.chr1 224883983 171 + 228333871 tgagatactcttca-------gaatcctcaaacgattgctacacg---caaca---tgactgaatctca-aataatgatggtaagcaaaggaaaccagatcccacctctacagatggaaggctacatatgctgtgatttcct-tcagtgcagg---atagacaatagaaactaa--tagagtgacaggaag i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140133840 170 - 143122389 tgagatactcttca-------gaatccttaaacgattgctacaca---caaca---tgactgaatctca-aataatgatggtaagcgaaagaaaccagatccca-ctctacagatggaaggctacatatgctctgatttcct-tcagtgcagg---ataaacaatagaaactaa--tagagtgacaggaag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16849830 172 - 229590362 tgaggtacttttca-------gaatcctccaacaattgctacaca---caaca---tgactgaatctta-aataatgatggtaagtgaaagaaaccagatcccacctctacagatggaagtctacatatgctgtgatttcctctcggtgcagg---atagacagtagaaactaa--cagagtgacaggaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223610488 172 - 227556264 tgaggtacttttca-------gaatcctccaacgattgctacaca---caaca---tgactgaatctta-aataatgatggtaagtgaaagaaaccagatcccacctctacagatggaagtctacatatgctatgatttcctctcggtgcagg---atagacagtagaaactaa--cagagtgacaggaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16661171 172 - 220367699 TGAGGTACTTTTCA-------GAATCCTCCAACGATTGCTGCACG---CAACA---TGACTGAATCTTA-AATAATGatggtaagtgaaagaaaccGGATCCCACCTCTACAGATGGAAGTCTGCATATGCTATGATTTCCTCTCGGTGCAGG---ATAGACAGCAGAAACTAA--CAGAGTGACAGGAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82460630 172 + 85787240 tgaggtacttttca-------gaatcctccaacgattgctacacg---caaca---tgactgaatctta-aataatgatggtaagtgaaagaaaccagatcccacctctacagatggaagtctgcatatgctatgatttcctctcggtgcagg---atagacagtagaaactaa--cagagtgacaggaaa i chlSab2.chr25 C 0 C 0 s mm10.chr1 178729470 176 + 195471971 caggatacccttca--------aatgttcagactgttgctacttg---tgataatttacgtggatctcagaataatcatgtgactgaaaataaaccaggctcc-ctgctaaaaccagaacactcctcatcatgtgatttcat-ctgttatagaattataaacaacataaactaa--tttagtgacacaaag i mm10.chr1 C 0 I 231 s canFam3.chr7 36307646 186 + 80974532 taaaaaaatctttaaaaaaaggaatattcaaactattggtttatggaacaaca---ttgatgagtcttaaaataattatagtgagtgaaagatgccagactcccctaccaaaaccagaagactacatatggtatgattccat-ttatctaaga-ttatagacaatacaaactaatctgtaatgacagaaaa i canFam3.chr7 I 174 C 0 e calJac3.chr19 14138211 11 - 49578535 I e ponAbe2.chr1 226237723 4298 - 229942017 M a score=424472.000000 s hg38.chr1_KI270759v1_alt 133173 223 + 425601 catatcagtggttgatgggaa--gtgagggtgggagggaggaaccgattacaaagggctgtgaggaaatgtttgggggtaatggatttgcttatgatcttgactgtgatgatttcacaggtgg-atacatatgacaa-aactcatcaaagtgtgcagttt-attatata---tcagttacatttcactaaagccaatAAATGATggccaggcatggtggctcacacctgta s panTro4.chr1 224884154 223 + 228333871 catatcagtggttgatgggaa--gtgagggtgggagggaggaaccgattacaaagggctgtgaggaaatgtttgggggtaatggatttgcttatgatcttgactgtgatgatttcacaggtgg-atacatatgacaa-aactcatcaaagtgtgcagttt-attatata---tcagttacatttcactaaagccaatAAATGATggccaggcatggtggctcacacctgta i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140134010 223 - 143122389 catatcagtggttgatgggaa--gtgagggtgggagggaggaaccgattacaaaggggtgtgaggaaatgtttgggggtaatggatttgcttatgatcttgattgtgatggtttcacaggtgg-atacatatgacaa-aactcatcaaagtgtgcagttt-attataga---tcagttatattttatTCCAGCCAATAAATGATggccaggcgtggtggctcacacctgta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16850002 223 - 229590362 catatcagtggtggatgggaa--gtgagggtgggagggaggaaccgattataaaggggtgtgaggaaatgtttgggaataatggatttgtttatgatcttgattgtgatggtttcacaggtgtcatacctatgacaa-aactcatcaaagtgtgcagttt-attacata---tcagttacatttcact-aaGCCAATAAATGATggccagccatggtggctcacacctata i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223610660 223 - 227556264 catatcagtggtggatgggaa--gtgagggtgggagggaggaaccgattataaaggggtgtgaggaaatgtttggggataatggatttgtttatgatcttgattgtgatggtttcacaggtgtcatacctatgacaa-aactcatcaaagtgtgcagttt-attacata---tcagttacatttcact-aaGCCAATAAATGATggccagccatggtggctcacacctata i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16661343 224 - 220367699 CATATCAGTGGTGGATGGGAA--GTGAGAGTGGGAGGGAAGAATCGATTACAAAGGGGTGTGAGGAAATGTTTGGGGATAATGGATTTGTTTATGATCTTGAttgtgatggtttcacaggtgtcATACCTATGACAA-AACTCATCAAAGTGTGCAGTTT-ATTATATA---TCAGTTACATTTCACTAAAGCAAATAAATGatggccagccgtggtggctcacacctata i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82460802 224 + 85787240 catatcagtggtggatgggaa--gtgagggtgggagggagaaaccgattacaaaggggtgtgaggaaatgtttgggggtaatggatttgtttttgatcttgattgtgatggtttcacaggtgacatacctatgacaa-aactcatcaaagtgtgcagttt-attatata---tcagttacatttcactaaagccaatAAATGATggccagccgtggtggctcacacctgta i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36307832 181 + 80974532 catgtcagtggttggctgcaatggggagggcgggagggaca--------acaaaag----------agcttttagggataatgaatacatccgttatct----tgtgatggtttcacaggtgc-atgcatatgacaagaactcaccaaattgtagactttgaatatgcattttttattatatatcaCTAAGGCTA--AATTGATGG------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178729646 231 + 195471971 I e calJac3.chr19 14138211 11 - 49578535 I e ponAbe2.chr1 226237723 4298 - 229942017 M a score=96055.000000 s hg38.chr1_KI270759v1_alt 133396 45 + 425601 atcccagaactttggcaggccgaggtgggaggatcacttgggtcc s panTro4.chr1 224884377 45 + 228333871 atcccagaactttggcaggccgaggtgggaggatcacttgggtcc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140134233 45 - 143122389 atcccagaactttggcaggccaaggtgggaggatcacttgggtcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16850225 45 - 229590362 atcccagaatgttggcaggccgaggcaggaggatcacttgggtcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223610883 45 - 227556264 atcccagaatgttggcaggccgaggcaggaggatcacttgggtcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16661567 45 - 220367699 atcccagaacgttggcaggccgaggcaggaggatcacttgggtcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82461026 45 + 85787240 atcccagaacgttggcaggccgacgcaggaggatcccttgggtcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14138222 45 - 49578535 atcctagaacttagggaggccgaggcaggaggatcactggagtct i calJac3.chr19 I 11 C 0 s canFam3.chr7 36308013 27 + 80974532 --------GTTTTGTGGGGATGAG---AGAGAATGTCT------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178729646 231 + 195471971 I e ponAbe2.chr1 226237723 4298 - 229942017 M a score=7963.000000 s hg38.chr1_KI270759v1_alt 133441 8 + 425601 aggagttt s panTro4.chr1 224884422 8 + 228333871 aggagttt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140134278 8 - 143122389 aggagttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16850270 8 - 229590362 aggagatc i rheMac3.chr1 C 0 C 0 s chlSab2.chr25 82461071 8 + 85787240 aggagtta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14138267 8 - 49578535 gggagttg i calJac3.chr19 C 0 C 0 s canFam3.chr7 36308040 8 + 80974532 TAGAGTGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178729646 231 + 195471971 I e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=31776.000000 s hg38.chr1_KI270759v1_alt 133449 52 + 425601 gagaccagcctgggtgacatggcaagaccctgtctctacaaaaaataaaaaa s panTro4.chr1 224884430 52 + 228333871 gagaccagcctgggtgacatggcaagaccctgtctctacaaaaaataaaaaa i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140134286 52 - 143122389 gagaccagcctgggcaacgtggtgagaccctgtctctacaaaaaataaaaaa i nomLeu3.chr5 C 0 I 1 s rheMac3.chr1 16850278 52 - 229590362 gagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaa i rheMac3.chr1 C 0 I 287 s calJac3.chr19 14138275 51 - 49578535 gagaccagcctgggcaagataacgagaccctgtctctacaaaaaacaaaaa- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36308048 10 + 80974532 ------------------------------------------AAATGAAGAC i canFam3.chr7 C 0 C 0 e mm10.chr1 178729646 231 + 195471971 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=1092.000000 s hg38.chr1_KI270759v1_alt 133501 2 + 425601 tt s panTro4.chr1 224884482 2 + 228333871 tt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140134339 2 - 143122389 tt i nomLeu3.chr5 I 1 C 0 s canFam3.chr7 36308058 2 + 80974532 TT i canFam3.chr7 C 0 C 0 e mm10.chr1 178729646 231 + 195471971 I e calJac3.chr19 14138326 0 - 49578535 C e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=28113.000000 s hg38.chr1_KI270759v1_alt 133503 63 + 425601 agccagacttagtggca-tgtgcctg------tagtcctagctgctctggaggctgaggtgggaggattg s panTro4.chr1 224884484 63 + 228333871 agccagacttagtggca-tgtgcctg------tagtcctagctgctctggaggctgaggtgggaggattg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140134341 64 - 143122389 agccagacatagtggcattttgcctg------tagtcctagctgctgtggaggctgaggtgggaggattg i nomLeu3.chr5 C 0 M 295 s calJac3.chr19 14138326 68 - 49578535 -gccagatgtagtcgcg-tgtgcctgtagtcctagtcctagctactctggaggccgaggtgggaggactg i calJac3.chr19 C 0 C 0 e mm10.chr1 178729646 231 + 195471971 I e canFam3.chr7 36308060 0 + 80974532 C e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=13291.000000 s hg38.chr1_KI270759v1_alt 133566 58 + 425601 attgagcccaggaggttaaggctacagtgagccatgattgtaccactgtactcgagcc s panTro4.chr1 224884547 58 + 228333871 attgagcccaggaggttgaggctacagtgagccatgattgtaccactgtactcgagcc i panTro4.chr1 C 0 C 0 s calJac3.chr19 14138394 57 - 49578535 attgagcccaggaggttgaggctgccgtga-ccacgattgcaccactgcccttgagcc i calJac3.chr19 C 0 C 0 e mm10.chr1 178729646 231 + 195471971 I e canFam3.chr7 36308060 0 + 80974532 C e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e nomLeu3.chr5 140134405 295 - 143122389 M e ponAbe2.chr1 226237723 4298 - 229942017 M a score=8032.000000 s hg38.chr1_KI270759v1_alt 133624 48 + 425601 tgggcaaaggaacaagaccctgtctcaaaaaaaaaaaaaaaaagaaaa s panTro4.chr1 224884605 47 + 228333871 tgggcgaaggaacaagaccctgtctc-aaaaaaaaaaaaaaaagaaaa i panTro4.chr1 C 0 C 0 s calJac3.chr19 14138451 47 - 49578535 tggatgaaggagcaagaccctgtctcagaaaaagggaagaaaagaaa- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36308060 22 + 80974532 TGGATAAAGGATC----CTTTttctc---------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178729646 231 + 195471971 I e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e nomLeu3.chr5 140134405 295 - 143122389 M e ponAbe2.chr1 226237723 4298 - 229942017 M a score=14457.000000 s hg38.chr1_KI270759v1_alt 133672 35 + 425601 aagaaaGGTAATAAATGAATTTTGTtgggattaga s panTro4.chr1 224884652 35 + 228333871 aagaaaGGtaataaatgagttttgttgggattaga i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140134700 35 - 143122389 AAAAATAGTAATAAATGAATTTTGTtgggattaga i nomLeu3.chr5 M 295 C 0 s calJac3.chr19 14138498 29 - 49578535 ------GGTAATAGATGACTTTTGTtgggattcga i calJac3.chr19 C 0 C 0 e mm10.chr1 178729646 231 + 195471971 I e canFam3.chr7 36308082 0 + 80974532 C e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=159306.000000 s hg38.chr1_KI270759v1_alt 133707 301 + 425601 gaaaatgttttgagatggggcgagaattgtcttaaaaagtaaatagag-ttgcaataagtggtcgttttcctctggaaggaaaagtgttaataataggaacccctatgaaa--tg-tattggattggcctca------------------ttaa-----------------------ctatt---ttttccc------------------------------------------ccaagg---------------------gctcaagataagaaagtaccac---gggaaatct-------------ccaaattggtacacaaatctaaattattttaggtaat-aaaaAATCATCAAAGTAGAATAAAC--GGGAAGAAATGAGCAGAGGAGCTTTAATGAGAGCAAGGAGAAACATTTTGGGTAAAAT s panTro4.chr1 224884687 301 + 228333871 gaaaatgttttgagatggggcgagaattgtcttaaaaagtaaatagag-ttgcaataagtggtcgttttcctctggaaggaaaagtgttaataatagcaacccctatgaaa--tg-tattggattggcctca------------------ttaa-----------------------ctatt---ttttccc------------------------------------------ccaagg---------------------gctcaagataagaaagtaccac---gggaaatct-------------ccaaattggtacacaaatctaaattattttaggtaat-aaaaaatcatcaaagtagaataaat--gggaagaaatgagcagaggagctttaatgagagcaaggagaaacattttgggtaaaat i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140134735 301 - 143122389 gaaaatgttttgagatagggtgataattgtcttaaaaagtaaatagag-ttgcgataagtggtcattttcctctggaaggaaaagtgttaataatagga--tatgatgaaa--tgatattggattggcctca------------------ttga-----------------------ct-tt---ttttccc------------------------------------------ccaagc---------------------actcaagataagaaagtaccat---gggaaatct-------------ccaaattggtacacaaatctaaattattttaggtaat-aaaaAATCATCAAAGTAGAATAAACAGGGGAAGAAATGAGCAGAGGAGCTTTAATGAGAGCAAGGAGAAACATTTTGGGTAAAAT i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14138527 289 - 49578535 gaaaacgttttgagatggagtgagaattgtcttaaaaagtaaa----------------tggtcattttcctctggaaggaaga--gttagtaataggaa-ccctatgaaagtta-aattggattagcctcat-----------------ttaa-----------------------cttttttattttttc------------------------------------------ccaagg---------------------gctcaggataagatagcactgt---gggaaatct-------------ccaaattggtacacaaatctcaattattgtaggtaataaaaaaatcatcaaagtaggataaa---ggagagaaacgagcagaggaactcgaatgagagcaaggagaaacattctgggtaaaat i calJac3.chr19 C 0 C 0 s mm10.chr1 178729877 411 + 195471971 GAAAAGTATTTGAGAAGGTGAGAAAATTGTCTT--AGAGTGAACAAAGTTTGGGACAAACGGTCA-TTTCCTTAGGAAGGAA-AGCATAAATACCAAGAA-TCCCACGGAA--GG-CACGGAATTGGCTCAACCACACAGCCCCAAACAATTAAGGGGGAAAGCTCCAAACTTGGAGTTATA---TTTTTCCAGGAAATAAAAAAATcatcactcgggagacagatttctgagttcaaggctggcctggtctacagagtgagttccaggacagccagggctatacagagaaaccctgtctcaaaaaaacCaaataaataaataaa--taaataa--ataaataaa-taaataaaATCAGGGCTGAATAGTC--TGGGAGAAATGAGTAGAAGAGATTACATAAGAG--AGGAGAAACAGCTAAGGCAAAAt i mm10.chr1 I 231 I 1569 s canFam3.chr7 36308082 225 + 80974532 -------------------------------------------------------------------------tggagggagaagtgttaataattggaacccccaggaaaa-ca-tattaaactggcttta------------------ttta-----------------------acatt---ttt----------------------------------------------gcaaag---------------------catcaagataa---agtaccgt---gagaaatct-------------ccagatttgtgcacaaaactaagttctttcaggtaat-aaaatatcaTCAAGGTAGAATAAACAGGTGAAGAAGTAAGCAGAGAAACTTTAATGAGAATGAGGAAAAATGTTGCTGGTAAAGC i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=45426.000000 s hg38.chr1_KI270759v1_alt 134008 72 + 425601 AATTCAAATTATTCTTATGAGATGATAGACTTGGAGAAACTGTTTATAATTGAGGAAGGGGATGTAAGGACT s panTro4.chr1 224884988 72 + 228333871 aattcaaattattcttatgagatgatagacttggagaaactgtttataattgaggaaggggatgtaaggact i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140135036 72 - 143122389 AATTCAAATTATTCTTATGAGATGATAGACTTGGAGAAACTGTTTATAATTGAGGAAGGGGATTTAAGAACT i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14138816 72 - 49578535 aattgaaattatttttatgagatgacagacatggggaaactgtttataattgaggcaggggatttcaggact i calJac3.chr19 C 0 C 0 s canFam3.chr7 36308307 68 + 80974532 AGTTCACACTG----TACGGGATGGAAGGCTCTGAGTAACTGGTTGTAGTTGAGGACAAGAATCTGAGGACT i canFam3.chr7 C 0 I 223 e mm10.chr1 178730288 1569 + 195471971 I e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=1872.000000 s hg38.chr1_KI270759v1_alt 134080 4 + 425601 TTGT s panTro4.chr1 224885060 4 + 228333871 ttgt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140135108 4 - 143122389 TTGT i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14138888 4 - 49578535 ttgc i calJac3.chr19 C 0 C 0 e mm10.chr1 178730288 1569 + 195471971 I e canFam3.chr7 36308375 223 + 80974532 I e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=83627.000000 s hg38.chr1_KI270759v1_alt 134084 155 + 425601 TGCCAGAAGATTCAGCCTAAGATC------------ACCAGGAGTAACTAAATGTGTTGGACATCATCGGAAAGAATATTGAAAATATTGAAACAAAGTGAAAGGTACCACCTTACCCTTGGGCAAAGTGAACACTTCTTTCAACCTAGAAGTTCCTATAAAGTTCT s panTro4.chr1 224885064 155 + 228333871 tgccagaagattcagcctaagatc------------accaggagcaactaaatgtgttggacatcatcggaaagaatattgaaaatattgaaacaaagtgaaaggtaccatcttacccttgggcaaaGTGAACACTTCTTTCAACCTAGAAGTTCCTATAAAGTTCT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140135112 155 - 143122389 TGCCAGAAGATTCAGCCTAAGATC------------ACCAGGAGTAATTAAATGTGTTGGCCATCATCGGGAAGAACACTGAAAATATTGAAACAAAGTGAAAGGTACCATCTTACCCTTGGGCAAAGTGAACATTTCTTTCAACCTAGAAGTTCCTATAAAGTTCT i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14138892 143 - 49578535 tgcc-gaagattcagcctcagatc------------gccaggaataacacactgcactggacatcatcagggaggatgctgaaa----------caagtgaaagg-accaccctacccctgcacagaGTGAACATTTCTTTGAACCTAGAAGTTTCAGTAAAGTTCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36308598 159 + 80974532 TGCCGGAACCTTCAGTCTACAGTCATGACCAAAGAAACCAATAATGGTGAAGCTTGTTAGATATTATCAGAAAGGATATTGGAG--------ACACAGTGAAAGGAATCATCGTGTCCTTGGACCAAATAAAAATTTGTTAGAACTTGAAAGTTCTTATGAAGGTTT i canFam3.chr7 I 223 I 192 e mm10.chr1 178730288 1569 + 195471971 I e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=600.000000 s hg38.chr1_KI270759v1_alt 134239 1 + 425601 G s panTro4.chr1 224885219 1 + 228333871 G i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140135267 1 - 143122389 G i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14139035 1 - 49578535 G i calJac3.chr19 C 0 C 0 e mm10.chr1 178730288 1569 + 195471971 I e canFam3.chr7 36308757 192 + 80974532 I e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=19546.000000 s hg38.chr1_KI270759v1_alt 134240 73 + 425601 ACAggccaggtgcggtggctcacgcctgtaatcccagcacttggggaggccgaggcgggcagatcacgaggtg s panTro4.chr1 224885220 73 + 228333871 ACAggccaggtgtggtggctcacgcctgtaatcccagcacttggggaggccgaggcgggcagatcacgaggtg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140135268 73 - 143122389 ACAggctgggcgcggtggctcacgcctgtaatcccagcacttcgggaggccgaggcgggcggatcacgaggtg i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178730288 1569 + 195471971 I e canFam3.chr7 36308757 192 + 80974532 I e calJac3.chr19 14139036 0 - 49578535 C e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e papAnu2.chr1 16661612 0 - 220367699 C e macFas5.chr1 223610928 0 - 227556264 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=7640.000000 s hg38.chr1_KI270759v1_alt 134313 8 + 425601 aggagatc s panTro4.chr1 224885293 8 + 228333871 aggagatc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140135341 8 - 143122389 aggagatc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223610928 8 - 227556264 aggagatc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16661612 8 - 220367699 aggagatc i papAnu2.chr1 C 0 C 0 e mm10.chr1 178730288 1569 + 195471971 I e canFam3.chr7 36308757 192 + 80974532 I e calJac3.chr19 14139036 0 - 49578535 C e rheMac3.chr1 16850330 287 - 229590362 I e chlSab2.chr25 82461079 0 + 85787240 C e ponAbe2.chr1 226237723 4298 - 229942017 M a score=267813.000000 s hg38.chr1_KI270759v1_alt 134321 230 + 425601 gagaccatcctggctaacacggtgaaaccccgtctctact-aaaaatacaaaaaattagccgggcgtggtggcgggagcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagctcgcagtgagccgagatcgtgccactgcacaccagcctgggcgacagagccagactctgcct---aaaaaaaaaaaaaaaCTAAAAGGTTCTC s panTro4.chr1 224885301 229 + 228333871 gagaccatcctggctaacacggtgaaaccccgtctctact-aaaaatacaaaaaattagctgggtgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccaggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagccagactctgcct----aaaaaaaaaaaaaactaaaaaGTTCTC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140135349 234 - 143122389 gagaccatcccggctaacacggtgaaaccccgtctccactaaaaaatacaaaaaattagctgggtgtggtggtgggcgcctgtggtcccagctacttgggaggctgaggcaggagaatggcatgaacccaggaggcggagcttgcagtgagccgagatcaagccactgcactccagcctgggcaacagagcgagaccctgtctaaaaaaaaaaaaaaaaaactaaaaaGTTCTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223610936 223 - 227556264 gagaccatcctggctaacacggtgaaaccccgtctctact-aaaaatacaaaaaattagccgggcgtggtggt-ggcgcctgtggtcccagctactcgggaggctgaggcaggagaatggcgggaacccgggaggcggagcttgcagtgagctgagatccggccactgcactccagcctgggcgacagagcgagactctgtct---c----aaaaaaaaaa--aaaaaGTTCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16661620 225 - 220367699 gagaccatcctggctaacacggtgaaaccccgtctctact-aaaaatacaaaaaattagccgggcgtggtggt-ggcgcctgtggtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggcggagcttgcagtgagctgagatccggccactgcactccagcctgggcgacagagcgagactctgtct---c--aaaaaaaaaaaa--aaaaagttctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82461079 226 + 85787240 gagaccatcctggctaacacggtgaaaccccatccctact-aaaaatacaaaaaattagcccggtgtggtggcaggtacctgtaatcccagctactcgggaggctgaggcaggagaatggtgtg-acccgggaggcggagcttgcagtgagctgaggtcgcgccact-cactccagcctgggcgacagagcgagactccgtct---caaaaaaaaaaaaaa--aaaaaGTTCTG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178730288 1569 + 195471971 I e canFam3.chr7 36308757 192 + 80974532 I e calJac3.chr19 14139036 0 - 49578535 C e rheMac3.chr1 16850330 287 - 229590362 I e ponAbe2.chr1 226237723 4298 - 229942017 M a score=21282.000000 s hg38.chr1_KI270759v1_alt 134551 12 + 425601 ACAAGTTCAACT s panTro4.chr1 224885530 12 + 228333871 ACAAGTTCAACT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140135583 12 - 143122389 ACAAGTTCAACT i nomLeu3.chr5 C 0 I 6 s macFas5.chr1 223611159 12 - 227556264 ACAAGTTCACCT i macFas5.chr1 C 0 I 6 s papAnu2.chr1 16661845 12 - 220367699 acaAGTTCACCT i papAnu2.chr1 C 0 I 6 s chlSab2.chr25 82461305 12 + 85787240 ACAAGTTCACCT i chlSab2.chr25 C 0 I 6 s calJac3.chr19 14139036 12 - 49578535 ACAAGTTCACCT i calJac3.chr19 C 0 C 0 e mm10.chr1 178730288 1569 + 195471971 I e canFam3.chr7 36308757 192 + 80974532 I e rheMac3.chr1 16850330 287 - 229590362 I e ponAbe2.chr1 226237723 4298 - 229942017 M a score=64112.000000 s hg38.chr1_KI270759v1_alt 134563 32 + 425601 ------TATAAAAGGGAAGCAAAGCCTGGTGAGCGGGT s panTro4.chr1 224885542 32 + 228333871 ------TATAAAAGGGAAGCAAAGCCCGGTGAGCGGGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140135601 32 - 143122389 ------TATAAAAGGGAAGCAAAGCCAGGTGAGCGGGT i nomLeu3.chr5 I 6 I 2 s rheMac3.chr1 16850617 32 - 229590362 ------TATAAAAGGGGTGCAAAGCCTAGTGAGCGGGT i rheMac3.chr1 I 287 I 2 s macFas5.chr1 223611177 32 - 227556264 ------TATAAAAGGGGTGCAAAGCCTAGTGAGCGGGT i macFas5.chr1 I 6 I 2 s papAnu2.chr1 16661863 32 - 220367699 ------TGTAAAAGGGGTGCAAAGCCCAGTGAGCAGGT i papAnu2.chr1 I 6 I 2 s chlSab2.chr25 82461323 32 + 85787240 ------TATAAAAGGGGTGCAAGGCCCAGTGAGCGGGT i chlSab2.chr25 I 6 I 2 s calJac3.chr19 14139048 38 - 49578535 TATAAATATAAAAGCGAAGCAAAGACCATTAAGTGAGT i calJac3.chr19 C 0 C 0 e mm10.chr1 178730288 1569 + 195471971 I e canFam3.chr7 36308757 192 + 80974532 I e ponAbe2.chr1 226237723 4298 - 229942017 M a score=40002.000000 s hg38.chr1_KI270759v1_alt 134595 14 + 425601 --AGAGACTCCCATTT s panTro4.chr1 224885574 14 + 228333871 --AGAGACTCCCATTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226242028 14 - 229942017 --AGAGACTCCCATTT i ponAbe2.chr1 M 4298 C 0 s nomLeu3.chr5 140135635 14 - 143122389 --AGAGACTCCCATTT i nomLeu3.chr5 I 2 C 0 s rheMac3.chr1 16850651 14 - 229590362 --AGCGACTCCCATTT i rheMac3.chr1 I 2 C 0 s macFas5.chr1 223611211 14 - 227556264 --AGCGACTCCCATTT i macFas5.chr1 I 2 C 0 s papAnu2.chr1 16661897 14 - 220367699 --AGCGACTCCCATTT i papAnu2.chr1 I 2 C 0 s chlSab2.chr25 82461357 14 + 85787240 --AGCGACTCCCATTT i chlSab2.chr25 I 2 C 0 s calJac3.chr19 14139086 16 - 49578535 AGAGAGACGCCCATTG i calJac3.chr19 C 0 C 0 e mm10.chr1 178730288 1569 + 195471971 I e canFam3.chr7 36308757 192 + 80974532 I a score=651990.000000 s hg38.chr1_KI270759v1_alt 134609 212 + 425601 GAGAACGGGCATTTGGAAGAACTCCCTAGTCCGGATGACAAGAGCTAGGGTGCAATCTGAGTAGCTCATTTGGCACGTGGATAGATTATTCATTAAGTTTTGGAACTATCTCTTAAGACGGGGAAGAAGCAGCCTTAGGGAACAACAAAA--CAAGCTGTATTCCACATCCTAAGACACAGTACCGACTGAGAATATAAATCTGCAGGTCCAGA s panTro4.chr1 224885588 212 + 228333871 GAGAACGGGCATTTGGAAGAACTCCCTAGTCCGGATGACAAGAGCTAGGGTGCAATCTGAGTAGCTCATTTGGCACGTGGATAGATTATTCATTAAGTTTTGGAACTATCTCTTAAGACAGGCAAGAAGCAGCCTTAGGGAACAACAAAA--CAAGCTGTATTCCACATCCTAAGACACAGTGCCGACTGAGAATATAAATCTGCAGGTCCAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226242042 211 - 229942017 GAGAACGGGCATTTGGAAGAACTCCCTAGTTCGGGTGACAAGAGCT-GGGTGGAATCTGAGTAGCTCATTTGGCACATGGATAGATTATTCATTAAGTTTTGGAACTATCTCTTAAGACGGGGAAGAAGCAGCCTTAGGGAACAACAAAA--CAAGCTGTATTCCACATCCTAAGACACAGTAACGACTGAGAATATAAATCTGCAGGTCTAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140135649 210 - 143122389 GAGAACGGGCATTTGGAAGAACTCCCTAGTCCAGATGACAAGAGCTAGGGTGGAATCTGAGTAGCTCATTTGGCACGTGGATAGATTATTCATTAAGTCTTGGAACTACCTCTTAAGACTGGGAAGAAGCAGCCTTAGGGAACAACAAAA--CAAGCTGTATTCCACATCCTAAGACACAGTACCGACTGAG-ATATAAATCTGCA-GTCCAGA i nomLeu3.chr5 C 0 M 398 s rheMac3.chr1 16850665 203 - 229590362 GAGAACAGGCATTTGGAAGAACTCCCCAGTCTCGGTGACA--AGCTAGGGTGGAATCTGAGTAGCTCATTTGGCACGTGGATAGATTATTCATTAAGTCTTGGAAC--TCTCTTAAGACTGGGAAGAAGCAGCCTT----AACAACAAAA--CAAGCTGTATTCCA-ATCCTAAGACACAGTACCAACTGAGAATATCAGTCTGCAGGTCCAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223611225 203 - 227556264 GAGAACAGGCATTTGGAAGAACTCCCCAGTCTCGGTGACA--AGCTAGGGTGGAATCTGAGTAGCTCATTTGGCACGTGGATAGATTATTCATTAAGTCTTGGAAC--TCTCTTAAGACTGGGAAGAAGCAGCCTT----AACAACAAAA--CAAGCTGTATTCCA-ATCCTAAGACACAGTACCAACTGAGAATATCAGTCTGCAGGTCCAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16661911 205 - 220367699 GAGAACAGGCATTTGGAAGAACTCCCCAGTCTCGGTGACA--AGCTAGGGTGGAATCTGAGTAGCTCATTTGGCACGTGGATAGATTATTCATTAAGTCTTGGAACTATCTCTTAAGACTGGGAAGAAGCAGCCTT----AACAACAAAA--CAAGCTGTATTCCA-ATCCTAAGACACAGTACCGACTGAGAATATCAGTCTGCAGGTCCAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82461371 202 + 85787240 GAGAACAGGCATTTGGAAGAACTCCCCAGTCTGGGTGACA--AGCTAGGGCGGAATCTGAGCAGCTCATTTGTCACGTGGATAGATTATTCATTAAGTCTTGGAACTATCTCTTAAGACTGGGAAGAAGCAGCCTT-------AACAAAA--CAGGCTGTATTCCA-ATCCTAAGACACAGCACCGACGGAGAATATCAGTCTGCAGGTCCAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14139102 204 - 49578535 GAGAACAGACATTTGGAAGAACTCCCGAGTCTGGCTGACC--AG---GTCTGGAATCGGAGCAGCTCATTTGGCACATGGGTAGATTCTTCATTAGGTCTTGGAACTATCTCTTAAGACTGGGAAGAGGCAGCCTTAGGGAACAAC---A--CACGCTGTATTCCACATCCTAAGACAGAGTACTGACTGAGGATGTCGATCTGCAGGTCCACA i calJac3.chr19 C 0 C 0 s mm10.chr1 178731857 211 + 195471971 GAGAACAGGCAGTTAAACTAATGCCTCAGTCTGGATGACAGGATCTAGG--GGGAGCTGAGCAGCTCATTTGACAGTTGGATAGATTATTCAGTAAATCTTGGGTTTATCTCTTAAGCCCAG-AAGAAGCTGCACTGGGGAAAAACAAAAAGCAAGCAGTTTTCCACACCTTAAGACACAGCAGCAACTGTGAATATAAATATGTAGGTCCAGG i mm10.chr1 I 1569 C 0 e canFam3.chr7 36308757 192 + 80974532 I a score=435109.000000 s hg38.chr1_KI270759v1_alt 134821 179 + 425601 TTAATCCACAGATGGCAGGCTGCTTGCAAGCTATTAGACAAAGCCAGGGGTGTTCGGGAGCAGATCCCCAACTTCTGACTCCATAGAGGGTCACAGCCTGCCTCTCTTGCACAGAAAGAGATGGAATTCTCAGCTAAGTGCCACAGGACTTCTGTCCAATACACTAGCCCTTCTAGTCT s panTro4.chr1 224885800 179 + 228333871 TTAATCCACAGATGGCAGGCTGCTTGCAAGCTATTAGACAAAGCCAGGGGTGTTTGGGAGCAGATCCCCAACTTCTGACTCCATAGAGGGTCACAGCCTGCCTCTCTTGCACAGAAAGAGATGGAATTCTCAGCTGAGTGCCACAGGACTCCTGTCCAATACACTAGCCCTTCTAGTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226242253 179 - 229942017 TGAATCCACAGATGGCAAGCTGATTGCAAGCTATTAGACAAAGCCAGGAGTGTTTGGGAGCAGATCCCCAACTTCTGACTCCATAGAGGGTCACAGCCTGCCTCTCTTGCACAGAAAGAGAAGGAATTCTCAGCTAAGTGCCACAGGACTCCTGTCCAATATACTAGCCATTCTAGTCT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16850868 179 - 229590362 TTAATCCACAGACGGCAGGCTGATTGCAAGCTCTTAGACAAAGCCAGGAGTGTGTGGGAGCATATCCCCCACTTCTGACTCCTTCGAGGGTCACAGTCTGCCTCTCTTGCACAGAAAGAGGTGGGATTCTCAGCTAAGTGCCACAGGACTCCTGTCCAATCTACTAGCCATTCTAGTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223611428 179 - 227556264 TTAATCCACAGACGGCAGGCTGATTGCAAGCTCTTAGACAAAGCCAGGAGTGTGTGGGAGCATATCCCCCACTTCTGACTCCTTCGAGGGTCACAGTCTGCCTCTCTTGCACAGAAAGAGGTGGGATTCTCAGCTAAGTGCCACAGGACTCCTGTCCAATCTACTAGCCATTCTAGTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16662116 179 - 220367699 TTAATCCACAGACGGCAGGCTGATTGCAAGCTCTTAGACAAAGCCAGGAGTGTGTGGGAGCGTATCCCCCACTTCTGACTCCTTCGAGGGTCACAGTCTGCCTCTCTTGCACAGAAAGAGGTGGGATTCTCAGCTAAGTGCCACAGGACTCCTGTCCAATCTACTAGCCATTCTAGTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82461573 179 + 85787240 TTAATCCACAGACGGCAGGCTGATTGCAGGCTCTTAGACAAAGCCAGGAGTGTGTGGGAGCGTATTCCCCACTTCTGACTCCTTCGAGGGTCACAGTCTGCCTCTCTTGCACAGAAAGAGGTGGGATTCTCAGCTAAGTGCCACAGGACTCCTGTCCAATCTACTAGCCATTCTAGTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14139306 174 - 49578535 TCCATCCACAGAGGGCAGGCTGACTGGCA-CTATTAGGCAAAGCCAGGAGCGTTTGGGAGCAAATCCCCAGCTCCTGATTCCATAGAGGGTCACGGCCTGCCTCTCTGGCAC---AAGAGTTGGAATTCTCAGCTAAATGCCGCAGGACT-CTGTCCAATGGGCTAGCTGTTCTAGTCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178732068 173 + 195471971 TGAATTTACAGACAGCAGGCTGATAGGCTGCTTCTAGACAAAG---GAGGCATTTGGGAACAAGTCCCCAG---TCAAGTCCATGAATGGTCATAGTATGACGTGACATCTTAGGAAGAGAGTGACTTCTCAGCCCAGTGCACTAGGAATCCAGTCCAGTATGATGGCAGTCCTTGTTT i mm10.chr1 C 0 C 0 e canFam3.chr7 36308757 192 + 80974532 I e nomLeu3.chr5 140135859 398 - 143122389 M a score=40813.000000 s hg38.chr1_KI270759v1_alt 135000 15 + 425601 GTTTCTGAAATAGTC s panTro4.chr1 224885979 15 + 228333871 GTTTCTGAAATAGTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226242432 15 - 229942017 GTTTCTGAAATAGTC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16851047 15 - 229590362 GTTTCTGAAATAGTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223611607 15 - 227556264 GTTTCTGAAATAGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16662295 15 - 220367699 GTTTCTGAAATAGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82461752 15 + 85787240 GTTTCTGAAATAGTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14139480 15 - 49578535 GTTTCCGCAGTAGTC i calJac3.chr19 C 0 I 298 s mm10.chr1 178732241 11 + 195471971 GGTCCTGACAT---- i mm10.chr1 C 0 C 0 s canFam3.chr7 36308949 15 + 80974532 gccccTGAAATATTT i canFam3.chr7 I 192 C 0 e nomLeu3.chr5 140135859 398 - 143122389 M a score=2548.000000 s hg38.chr1_KI270759v1_alt 135015 1 + 425601 T s panTro4.chr1 224885994 1 + 228333871 T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226242447 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16851062 1 - 229590362 T i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223611622 1 - 227556264 T i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16662310 1 - 220367699 T i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82461767 1 + 85787240 T i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36308964 1 + 80974532 T i canFam3.chr7 C 0 C 0 e mm10.chr1 178732252 0 + 195471971 C e calJac3.chr19 14139495 298 - 49578535 I e nomLeu3.chr5 140135859 398 - 143122389 M a score=1649940.000000 s hg38.chr1_KI270759v1_alt 135016 582 + 425601 TTTCTACATCATTTTTTAAAGCGG-TCCGTTATTCCGAGCACTTTTATCATGTAACACATCAGCTGCCATAAAAGCTTGAAGGTGGCTGAAAGTGGGCGAGGATCTAGAAGCCCCTTGGGCAAGTCCAGATTGGAAACACGTCATGGGAC--CTCCTTTTAGG-GACAGTCTCACAGGC-AGGCTGCCGTAGGATGACCTCAGGTGTCCCATGTTTTGGGTGGGAATGTCAACAGAGCAGATGCGAGAGGCATTTCACCCAAGCACCTGGATTGTTTCATGCCTGAAAGGAGGCAAGACAGGAAGGTAT-AAAATCCAGATCGGTGCAGTTGCTCAGAAAAGGGACAGGTGACGGCCTGGCGTTCTCTCCTT-GGCTTCCTGTGGAATTTCAAAGTTACTGCTTTGGGATTGTGAACTCCAGCCATCTGCGTGCTTGGAACCTGGAGAGCAATCCAGCTGGTGTCTACCACCGTAATTAAGAGGGGTGTGGAGCATGTAGGTGTTATACACCCCTG---------CCAATCACCAGGAAGGAGCTGAGTGTGGAATTCACATTTGAAAGTGAA-----GATGCA-GGAAGCCTGATAGCTCCCA s panTro4.chr1 224885995 583 + 228333871 TTTCTACATCATTTTTTAAAGCGGCTCCGTTATTCCGAGCACTTTTATCAAGTAACACATCAGCTGCCATAAAAGCTTGAAGGTGGCTGAAAGTGGGCGAGGATCTAGAAGCCCCTTGGGCAAGTCCAGATTGGAAACACGTCATGGGAC--CTCCTTTTAGG-GACAGTCTCACAGGC-AGGCTGCTGTAGGATGACCTCAGGTGTCCCATGTTTTGGGTGGGAATGTCAGCAGAGCAGATGCGAGAGGCATTTCCCCCAAGCACCTGGATTGTTTCATGCCCGAAAGGAGGCAAGACAGGAAGGTAC-AAAATCCAGATCGGTGCAGTTGCTCAGAAAAGGGACAGGTGACGGCCTGGCGTTCTCTCCTT-GGCTTCCTGTGGAATTTCAAAGTTACTGCTTTGGGATTGTGAACTCCAGCCATCTGCGTGCTTGGAACCTGGAGAGCAATCCAGCTGGTGTCTACCACCGTAATTAAGAGGGGTGTGGAGCATGTAGGTGTTATACACCCCTG---------CCAATCACCAGGAAGGAGCCGAGTGTGGAATTCACATTTGAAAGTGAA-----GATGCA-GGAAGCCTGATAGCTCCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226242448 583 - 229942017 TTTCTACATCATTTTTTAAAGCGGCTCCATTATTCTGAGCACTTTTATCAAGTAACACATCAGCTGCCGTAAAAGCTGGAAGGTGGCTGAAACTGGGCGAGGATCTAGAAGTCCCTTGGGCAACTCCAGATTGGAAACACGTCATGGGAC--CTCCTTTTAGG-GACAGACTCCCAGGC-AGGCTGCTGTAGGATGACTTCAGGTGTCCCATGTTTTGGGTGGGAATGTCAGCAGAGCAGATGCGAGAGGCATTTCCCCCAAGCACCTGGATTGTTTCATGTCCGAAAGGAGGCAAGACAGGAAGGTAT-AAAATCCAGATCGGTGCAGTTGCTCAGAAAAGGGACAGGTGATGGGCTGGCGTTCTCTCCTT-GGCTTCCTGTGGAATTTCAAAGTTACTGCTTTGGGATTGTGAACTCCAGCCATCTGCGTGCTTGGAACCTGGAGAGCAATCCAGCTGGTGTCTACCACCGTAATTAAGAGGGATATGGAGCATGTAGGTGTTATACACCCCTG---------CCAATCACCAGGAAGGAGCTGAGTGTGGAATTCACATTTGAAAGTGAA-----GATGCA-GGAAGCCTGATAGCTCCCA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16851063 582 - 229590362 TTTCTACATCATTTTTTAAAGCGGCTCCATTATTCTGAGCATTTTTATCAAGTAACACATCAGCTGCCATAAAAACTTGAAGGTAGCTGAAAGCGGGCGAGGATCTAGAAGCCCCTTGGGCAAGTCCGGATTGGAAACACGTCCTGGGAC--CTCCTTTTAGG-GACAGACTCACAGGC-AAGCTGCTGTAGGATGACCCCAGGTGTCCCATGTTTTGGGTGGGAATG--AGCAGAGCAGATGCGACAGGCACTTCCCCCAAGCACCTGGATTGTTTCATGCCCGAAAGGAGGCAAGACAGGAAGGTGT-AAAATCCAGATCCATGCAGTTGCTCAGAAAAAGGACAGGTGATGGCCTGGCACTCTCTCCTT-GGCTTCCTGTGGAATTCCAAAGGTACTGCTTTGGGATTGTGAACTCCAGCCATCTGCGTGCCTGGAACCTGGAGAGCAATCCGGCTGGTGTCTACCACCGTAATTAAGACGGGTGTGGAGCATGTAGGCGTTAAACACCCCTG---------CCAGTCGCCAGGAAGGGGCTGAGTGTGAAGTTCACATTTGAAAGTGAAG----GATGCA-GGAAGCCTGATAGCTCCCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223611623 582 - 227556264 TTTCTACATCATTTTTTAAAGCGGCTCCATTATTCTGAGCATTTTTATCAAGTAACACATCAGCTGCCATAAAAACTTGAAGGTAGCTGAAAGCGGGCGAGGATCTAGAAGCCCCTTGGGCAAGTCCGGATTGGAAACACGTCCTGGGAC--CTCCTTTTAGG-GACAGACTCACAGGC-AAGCTGCTGTAGGATGACCCCAGGTGTCCCATGTTTTGGGTGGGAATG--AGCAGAGCAGATGCGACAGGCACTTCCCCCAAGCACCTGGATTGTTTCATGCCCGAAAGGAGGCAAGACAGGAAGGTGT-AAAATCCAGATCCATGCAGTTGCTCAGAAAAAGGACAGGTGACGGCCTGGCACTCTCTCCTT-GGCTTCCTGTGGAATTCCAAAGGTACTGCTTTGGGATTGTGAACTCCAGCCATCTGCGTGCCTGGAACCTGGAGAGCAATCCGGCTGGTGTCTACCACCGTAATTAAGACGGGTGTGGAGCATGTAGGCGTTAAACACCCCTG---------CCAGTCGCCAGGAAGGGGCTGAGTGTGAAGTTCACATTTGAAAGTGAAG----GATGCA-GGAAGCCTGATAGCTCCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16662311 582 - 220367699 TTTctacatcattttttaaagcGGCTCCATTATTCTGAGCATTTTTATCAAGTAACACATCAGCTGCCATAAAAACTTGAAGGTAGCTGAAAGCGGGCAAGGATCTAGAAGCCCCTTGGGCAAGTCCGGATTGGAAACACGTCCTGGGAC--CTCCTTTTAGG-GACAGACTCACAGGC-AGGCTGCTGTAGGATGACCCCAGGTGTCCCATGTTTTGGGTGGGAATG--AGCAGAGCAGATGCGACAGGCACTTCCCCCAAGCACCTGGATTGTTTCATGCCCGAAAGGAGGCAAGACAGGAAGGTGT-AAAATCCAGATCCATGCAGTTGCTCAGAAAAAGGACAGGTGACGGCCTGGCACTCTCTCCTT-GGCTTCCTGTGGAATTCCAAAGGTACTGCTTTGGGATTGTGAACTCCAGCCATCTGCGTGCCTGGAACCTGGAGAGCAATCCGGCTGGTGTCTACCACCGTAATTAAGACGGGTGTGGAGCATGTAGGCGTTAAACACCCCTG---------CCAGTTGCCAGGAAGGGGCTGAGTGTGAAGTTCACATTTGAAAGTGAAG----GATGCA-GGAAGCCTGATCGCTCCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82461768 582 + 85787240 TTTCTACATCATTTTTTAAAGCGGCTCCATTATTCTGAGCATTTTTATCAAGTAACACATCAGTGGCCATAAAAACTTGAAGGTAGCTGAAAGCGGGCGAGGATCTAGAAGCCCCCTGGGCAAGTCCGGATTGGAAACACGTGCTGGGAC--CTCCGTTTAGG-GACAGACTCACAGGC-AGGCTGCTGTAGGGTGACCCCAGGTGTCCCATGTTTTGGGTGGGAATG--AGCAGAGCAGATGCGAGAGGCATTTCCCCCAAGCACCTGGATTGTTTCATGCCCGAAAGGAGGCAAGACAGGAAGGTGT-AAAATCCAGATCCATGCAGTTGCTCAGAAAAAGGACAGGTGATGGCCTGGCACTCTCTCCTT-GGCTTCCTGTGGAATTCCAAAGGTACTGCTTTGGGATTGTGAACTCCAGACATCTGCGTGCCTGGAACCTGGAGAGCAATCCAGCTGGTGTCTACCACCGTAATTAAGACGGGTGTGGAGCATGTAGGCATTAAACACCCCTG---------CCAATCACCAGGAAGGAGCTGAGTGTGAAGTTCACATTTGAAAGTGAAG----GATGCA-GGAAGTCTGATAGCTCCCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14139793 585 - 49578535 TTTCTAGATCATTTTAAAAAGTGGCT---TTATTCTGAGCATTTTTATCAAGTAACAAATCAGCTGCCATAAAAGCTGGAAGTTGGCTGAAAGTGGG--AGGATTTAGAAGCCCTTTGGGCACGTCCAGATTGGAAGCAGGTCATGGGGC--CCTCTTTTAGGAGGCAGACTCACAGGC-GGGTTGCTGT-GGATGACCTCAGGTGTCTCATGTTTTGGGTAGGAATGTCAGCAGAGCAGATGTG--AGGCATTTTCCCCAAGCACCTGGATTGTTTCATGCCCAACAGGAGGAAAGACAGGAAGGTAT-CAAATCCAAATCGGTGCAGTTGCTTGGAAGAAGGACAGGTGATGGCCTGGCGTTCTCTCCCTGGGCTTCCTGTGGAATTCCAAAG-TACTGCTCTGGGATTGTGAACTCCAGCCATCTGTGTGCCTGCAAGCTGGAAAGCAGTGCAGCTGGTGTCTACCACCGTCATTAACAGGGGTGTGGAGCAAGTTGACGTGACACACCCCTGTCCGCTGCTCTAATCACCAGGAGGGGGCTGAGTGTGAAATTCACATTTGAAAGTGAA-----GATGCA-GGAAGCCTAACAGCTCCCA i calJac3.chr19 I 298 C 0 s mm10.chr1 178732252 554 + 195471971 CTTTTAAAGCA-TTTACAAAATGGCTACCTTATCCTGGACATTTTTCTCAAGCAACAAATCCCTTGAGGTAAATGCTTGAAGCTGGCTGAAAGCAGACAAGGATTGAGAAACTCCTTGGGCTTGCC--------ATACTCATCCTGA-----CTCCTCCCAGGAGACAGGGCAGTGGGT-AGGATGGTAGAGAGTAAACTCTGACATCCCAGGACTCTGCGGTGAACGTCAGTGTGGCATATGTC--TGGCAGTTCCCTC-AGCACCTGGATTGTTTCATGCCC-ATAGGAGGTGAGACTAGACAGTG--ACAATAAAAATCAATGTAGCCATCCCCCAAA--GACAGATAACAGCCTGACATT-GCTTGAT-GGCTTCCTGTACAATCCCAAAG-TGCTACTCTGGGACTGCAAACTCCAGCCATCTTCATGGTGAGAGCCCAGAGAACAA---AGATAGTAACTCCCACTGCATTCGAGAGGACCAAGGGACAGGGAGACGATTCTGGCCTGTG---------TGTATCACCAGAAAG-----TAGTGCCAGCTTCATGTTGGGAAGTGAA-----GAGACA-GGATGCCTGGGGCCCTCT- i mm10.chr1 C 0 I 1 s canFam3.chr7 36308965 561 + 80974532 TTTCTACAGCATTTTAAAAAGTGGCTATATTATCCTGAGCATTTTTATCAAGTCACAAATCAGCTGATAGAAATGATCGAAGGCCATTGAAAGCAGACCAGGGTTCAGAAGCCCCTTCAGCAGGTTCC------AGGCTGATCATGGGCCCTCTCCTTTGGGA-GACAGACTCTTGGGCAAGGCTGGTGCAGACTGACCACTGGTATCT---------GAGACGAGTGTCGCCTTACCAGATGCT--GGGCAGGTCCCCCCAGCACCTGGATTGTTTCATACCTAAAAGAAGGCAAGACACGAAGGAATAAAAATCCAGATATGCACAATCCCTCAGAAAGAGGGCAGG-GCTGGCCTGGTCTTCTCTCCTT-GGCTTTGTGTGGCATTGCAAAG-TGCTGCTCCGGGACTGTGAACTCCAGCCATCTGCTTGCTTGGAACCTGGAGAGC----------GTCTCTGCTGCCTTAATTAAGGGGGTTGTGGAGCCTGGGGGCCTTGCTGCCCAGTG---------TTAATCACCAGGATGGAGCTGAGCGTGGGAAATGC---TGGGGGTGGGGGGTAGACACACAGAAGCCCGATGGCTCCCC i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140135859 398 - 143122389 M a score=4095.000000 s hg38.chr1_KI270759v1_alt 135598 1 + 425601 A s panTro4.chr1 224886578 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226243031 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140136257 1 - 143122389 A i nomLeu3.chr5 M 398 C 0 s rheMac3.chr1 16851645 1 - 229590362 A i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223612205 1 - 227556264 A i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16662893 1 - 220367699 A i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82462350 1 + 85787240 A i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14140378 1 - 49578535 A i calJac3.chr19 C 0 M 493 s canFam3.chr7 36309526 1 + 80974532 A i canFam3.chr7 C 0 C 0 e mm10.chr1 178732806 1 + 195471971 I a score=428973.000000 s hg38.chr1_KI270759v1_alt 135599 202 + 425601 AAGAAACGGCCACCAGATTT-TGTTTA----aaacaaacaaacaacaac--aacaaaac---acacaaaaacaacGGAAGGGTACACTTT-AGAAAAACTATTGACTTTT-TCC-CAAGATATCTGTACCTCAGCCACAACTACAAAAAAGAGTCTCTTCCTCTGTTGCTGGCATCTAGTCTGCTGTAATTGTAGAATTTTCTGATGCTCCATGG s panTro4.chr1 224886579 198 + 228333871 AAGAAACGGCCACCAGATTT-TGTTTA--------AAACAAACAACAAC--AACAAAAC---ACACAAAAACAACGGAAGGGTACACTTT-AGAAAAACGATTGACTTTT-TCC-CAAGATATCTGTACCTCACTCACAACTACAAAAAAGAGTCTCTTCCTCTGTTGCTGGCATCTAGTCTGCTGTAATTGTAGAATTTTCTGATGCTCCATGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226243032 211 - 229942017 AAGAAACGGCCACCAGGTTT-TGTTTGTTTAAAACAAACAGACAACaacaaaacaaaacaaaacaaaaAAACAACGGAAGGGTACACTTT-AGAAAAACTGTTGACTTTT-TCC-CAAGATATCTGTACCTCAGCCACAACTACAAAAAAGAGTCTCTTTCTCTGTTGCTGGCATCTAGTCTGCTGTACTTGTAGAATTTTCTGATGCTCCATGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140136258 190 - 143122389 AAGAAACGTCCACCAGGTTT-TGTTTGTTTAA---AAACAA----------AACAAAAC--------AAAAAAACGGAAGGGTACACTTT-AGAAAAACTATTGACTTTT-TCC-CAAGATACCTGTACCTCAGCCACAACTACAAAAGAGAGTCTCTTTCTCTGTTGCTGGCATCTCGTCTGCTGTACTTGTAGAATTTTCTGATGCTCCATGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16851646 174 - 229590362 AATAAATGGCCACCAGGTTT-TGTTTA------------------------AAAAAAA--------------AAGGGAAGGGTACGCTTTAGAAAAAAATATTGACTTTT-CCC-CAAGATATCTGTACCTCAGCTGCAACTCCATAAGAGAGTCTCTTTCTCTGTTGCCGGCATCTTGTCTGCTGTAATTGTAGGATTTTCTGGTGCTCCGTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223612206 174 - 227556264 AATAAATGGCCACCAGGTTT-TGTTTT------------------------AAAAAAA--------------AAGGGAAGGGTACGCTTTAGAAAAAAATATTGACTTTT-CCC-CAAGATATCTGTACCTCAGCTGCAACTCCATAAGAGAGTCTCTTTCTCTGTTGCCGGCATCTTGTCTGCTGTAATTGTAGGATTTTCTGGTGCTCCGTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16662894 184 - 220367699 AATAAATGGCCACcaggttt-tgttta------------------------aaaaaaaa---aaaaaagaagaagggaagggtaTGCTTT-GGAAAAAATATTGACTTTT-CCC-CAAGATATCTGTACCTCAGCTGCAACTACGTAAGAgagtctctttctctgttgccgGCATCTTGTCTGCTGTAATTGTAGGATTTTCTGGTGCTCCATGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82462351 185 + 85787240 AATAAATGGCCACCAGGTTT-TGTTTa------------------------aaaaaaaa---aaaaaaaaa-aaGGGAAGGGTACGCTTTAGAAAAAAATATTGACTTTTCCCC-CAAGATATCTGTACCTCAGCTGCAACTACATAAGAGAGTCTCTTTCTCTGTTGCTGGCATCTTGTCTGCTGTAATTGTAGAATTTTCTGGTGCTCCATGG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178732807 161 + 195471971 AGCACAGGAGTAGAAGGTCTGTGTTGG------------------------AA------------------------AAGAGTCTAGTTGAGAGAAAAGAAAGCACTCTT-TTC-CCAGATGTCGGCACCTCAGCCACAACT----AAACAAGCCTCTTTGTCTGTGGCTGGCATCTTGTTTGATGTGATCCTGTAGTTTTCTGATGCTCTGTGA i mm10.chr1 I 1 C 0 s canFam3.chr7 36309527 169 + 80974532 AGGACACAGCTGCCAGGTTT-TCCTTG------------------------TCAAAGGC---------------ATGGTGGGTACAGTTG-AGAAAAAATGTTGACTCTT-TCCTTAAAATGTCCATATTTCAGCCACAGTGGAATAAGAA----TCTTGCTCTGTTGCTGGCCTCTTGTTTGCTGTAATTATATCACTTTCTGATGCTCCAGGG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14140379 493 - 49578535 M a score=1684032.000000 s hg38.chr1_KI270759v1_alt 135801 411 + 425601 ---CCATCG-------TTGCTTCTTTGTCCT------------CCCCACTA-TTTCATCCGCCGGC-TCCTGGGAGGGGAGGGTTCCAGTTCACTCGGCTAAC--GTGTGTGAGTCCGACAGTAACGAGCAAC---GC----AGACCCCGGGAAGAGGAACAAGAATAGGACATTCCTATA-TTTTTATGTGGAGATTGATAATCAAGGCTAACAATCCTGGCAGAAGGTGAACAACACATTAAACAGAGGGGAAAAGATAATAAAATATCTCCTGATGCTTAACAATCGTTGGGTGGAAACATTCCCTGGAATTATACAGCTGTTGCATTTGATGGCTCATAAAGCCTCAGTAAAGTCCGTCAAGGGCCTTTTTTCTTGGCGAGGGACCATTCTTCT-CATGCGGTTATGATAGCATCTGCTTCCTGTCCCTGGAAGTGCACAGA s panTro4.chr1 224886777 411 + 228333871 ---CCATCG-------TTGCTTCTTTGTCCC------------CCCCACTA-TTTCATCCGCCAGC-TCCTGGGAGGAGAGGGTTCCAGTTCACTCGGCTAAC--GTGTGTGATTCCGACAGTAACGAGCAAC---GC----AGACCCCGGGAAGAGGAACAAGAATAGGACATTCCTATA-TTTTTATGTGGAGATTGATAATCAAGGCTAACAACCCCGGCAGAAGGTGAACAACACATTAAGCAGAGGGGAAAAGATAATAAAATATCTCCTGCTGCTTAACAATCGTTGGGTGGAAACATTCCCTGGAATTATACAGCTGTTGCATTTGATGGCTCATAAAGCCTCAGTAAAGTCCGTCAAGGGCCTTTTTTCTTGGCGAGGGACCATTCTTCT-CATGCGGTTATGATAGCATCTGCTTCCTGTCCCTGGAAGTGCACAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226243243 410 - 229942017 ---CCATTG-------TTGCTTCTTTGTCCT------------CCCCACTA-TTTCATCTGCCGGC-TCTTGGGAGGGGA-GGTTCCAGTTCCCTCGGCTAAC--GTGTGTGATTCCGACAGTAGCGAGCAAC---GC----AGACCCTGGGAAGAGGAACAAGAATAGGACATTCCTATA-TTTTTATGTGGAGATTGATAATCAAGGCTAACAATCCCGGCAGAAGGTGAACAACACATTAAACAGAGGGGAAAAGATAATAAAATATCTCCTGCTGCTTAACAGTCGTTGGGTGGAAACGTTCCCTAGAATTATACAGCCATTGCACTTGATAGCTCATAAAGCCTCAGTAAAGTCCGTCAAGGGCCTTTTTTCTTGGCGAGGGACCATTTTTTT-CATGCAATTATGATAACATCTGCTTCCTGTCCCTGGAAGTGCACAGA i ponAbe2.chr1 C 0 M 1160 s nomLeu3.chr5 140136448 409 - 143122389 ---CCATCG-------TTGCTTCTTTGTCCT------------CTCC-TTA-TTTCATCTGCCGGC-TCCTGTGAGGCGA-GGTTCCAGTTCCCTCGGCTAAC--GTGTGTGATTCCGACAGTAACGAGCAAC---GC----AGACCCCGGGAAGAGGAACAAGAATAGGACATTCCTATA-TTTTTATGTGGAGATTGATAATCAAGGCCAACAATCCCGGCAGAAGGTGAACAACACATTAAGCAGAGGGGAAAAGATAATAAAATATCTCCTGCTGCTTAACAGTCGTTGGCTGGAAACATTCCCTAGAATTATACAGCTGTTGCACTTGATGGCTCATAAAGCCTCAGTAAAGTCCGTCAAGGGCCTTTTTTCTTGGCGAGGGACCATCTTTTT-CATGCAGTTATGATAGCATCTGGTTCCTGTCCCTGGAAGTGCACAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16851820 409 - 229590362 ---CCAGCG-------TTGCTTCCTTGTCCT------------CCCC-CCA-TTTCATCTGCCGGC-TCCTGGGAGGGGA-GATTCCAGTTCGCTCGGCTAAC--GTGTGTGATTCCGACGGTAACGAGCAAC---GC----AGACCCCGGGAAGAGGAACAAGAATGGGACGTTCCTATA-TTTTTATGTGGAGATTGATAATCAGGGCTAACAATCCCGGCAGAAGGTGAACAACACATTAAACAGAGGGGAAAAGATAATAAAATATCTCCTGCTGCTTAACAGTCGTTGGGTGGAAACATTCCCTGGAACTATACAGCTGTTGCACTTGATGGCTCATAAAGCCTCAGTAAAGTCCGTCAAGGGCCTTTTTTCTTGGCGAGGGACCATTTTTTT-CATGCAGTTATGATAGCATCTGGTTGCTGTCCCTGCAAGTGCACGGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223612380 409 - 227556264 ---CCAGCG-------TTGCTTCCTTGTCCT------------CCCC-CCA-TTTCATCTGCCGGC-TCCTGGGAGGGGA-GATTCCAGTTCGCTCGGCTAAC--GTGTGTGATTCCGACGGTAACGAGCAAC---GC----AGACCCCGGGAAGAGGAACAAGAATGGGACGTTCCTATA-TTTTTATGTGGAGATTGATAATCAGGGCTAACAATCCCGGCAGAAGGTGAACAACACATTAAACAGAGGGGAAAAGATAATAAAATATCTCCTGCTGCTTAACAGTCGTTGGGTGGAAACATTCCCTGGAACTATACAGCTGTTGCACTTGATGGCTCATAAAGCCTCAGTAAAGTCCGTCAAGGGCCTTTTTTCTTGGCGAGGGACCATTTTTTT-CATGCAGTTATGATAGCATCTGGTTGCTGTCCCTGCAAGTGCACGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16663078 409 - 220367699 ---CCAGCG-------TTGCTTCCTTGTCCT------------CCCC-CCA-TTTCATCTGCCGGC-TCCTGGGAGGGGA-GATTCCAGTTCGCTCGGCTAAC--GTGTGTGATTCCGACGGTAACGAGCAAC---GC----AGACCCCGGGAAGAGGAACAAGAATGGGACGTTCCTATA-TTTTTATGTGGAGATTGATAATCAGGGCTAACAATCCCGGCAGAAGGTGAACAACACATTAAACAGAGgggaaaagataataaaatatctcCTGCTGCTTAACAGTCGTTGGGTGGAAACGTTCCCTGGAACTATACAGCTGTTGCACTTGATGGCTCATAAAGCCTCAGTAAAGTCCGTCAAGGGCCTTTTTTCTTGGCGAGGGACCAttttttt-CATGCAGTTATGATAGCATCTGGTTGCTGTCCCTGCAAGTGCACGGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82462536 410 + 85787240 ---CCATCG-------TGGCTTCCTTGTCCT------------CCCC-CCAGTTTCATCTGCCTGC-TCCTGGGAGGGGA-GGCTCCAGTTCGCTCGGCTAAC--GTGTGTGATTCCGACGGTAACGAGCAAC---GC----AGACCCCGGGAAGAGGAACAAGAGTAGGACGTTCCTATA-TTTTTATGTGGAGATTGATAATCAGGGCTAACAATCCCGGCAGAAGGTGAACAACACATTAAACAGAGGGGAAAAGATAATAAAATATCTCCTGCTGCTTAACAGTCGTTGGGTGGAAACATTCCCTGGAACTGTACAGCTGTTGCACTTGATGGCTCATAAAGCCTCAGTAAAGTCCGTCAAGGGCCTTTTTTCTTGGCGAGGGACCATTTTTTT-CATGCAGTTATGATAGCATCTGGTTGCTGTCCCTGGAAGTGCACGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14140881 401 - 49578535 ---CCATCG-------TGGCGTCCTTATCCT------------CCTC-CCA-TTTCATCTGCCGGT-TCCTGGGAGAGGA-GGTTCCAGTTCGCTCGGCTAATGAGTGTGTGATTCCGACAGTAATGAGCAAC---AC----AGACCCTGGGAAGAGGAACAAGAATAATACATTCCCATATTTTTTATGTGGAGATTGATAATCAAGGCTAGCAGTCCCGGCAGAAGGTGAACAACACTTTCAACAGCGGGGAAAAGATAATAAAATATCTCCTGCTGCTTAACAATTGTTGGGTGGAAACAGTCCCTGCAAC-----------TGCACTTCAGGGCTCATAAAGCCTCAGTAAAGTCCGTCAAGGGCCTTTTTTCTTGGTGAGGGACCATTTTTTT-CATGCAGTTATGATAGCATCTGGTTCCCGTCCCTGAGAGTGCACAGA i calJac3.chr19 M 493 C 0 s mm10.chr1 178732968 422 + 195471971 ---CCACCA-------GGGCATCCTTCTCCT---TTCTTGCCCCGCC-CTG-AGTCATCTACCAGCTTCCCCCACACAGA-GGTTCCAATCCTCTCAGCTAACAAGTGTGTGACTCCAACCTTAACGAGCAAACAGAC----AGACTCCAG--AGAGGAACAGGAGTAGGACATTCCTATA-CTTCTATGTTGAGATGGATAACCAAAGCTAACCACACCAGCAGAAGGTGAGCAACACATTAAACAGAGGGGAAAGGATAATAAAATATCGCCTGCTGTTTAACAATCGCCGGGTGGAAACATT-CCGGGAACTGTGCAGCTGCCGCACTTGATGGCTCATAAAGCCCCTGTAACGTCCGTCAAGGGCCTTTTTTCTTGGTGAGGGGCCATTTTTTTCCATGCAGTTATGATAGCATCTGGTTCCTGTCCCTAGAAGTACAGGGA i mm10.chr1 C 0 C 0 s canFam3.chr7 36309696 419 + 80974532 TGGTCAGTGCTTCCTCCTGCTTCCTCGTCCTGACTCCCCTCCCCCCT-CAA-TTCCACACTTCAGC-CATT----------GGTTCTACTCCGCCCCACTAAC----CAGTGATTCTGACAGTAATGAGCAAC---CCGGAGAGACCCCAAGGAGGAGAACAAGAACAGGACATTCCTGCA-TTTTTATGTGGAGATTGATAATCAAGGCTAACAATCCCAGCAGAAGGTGAACAGCACAGGAGA-----AGGAAAAGATAATAAAATATCGCCTGCTGCTTAACAGTCGTTGGGTGGAAACGTTCCCTGGAACTATCCAGCTGTTGCACTTGATGGCTCATAAAGCCTCCGTAACGTCCGTCAAGGGCCTTTTTTCTTGGTGAGGGGCCATTTTTTT-CATGCAGTTATGATAGCATCTGGTTCCTGTCCCTGAAAGTGCAGAGA i canFam3.chr7 C 0 C 0 a score=698568.000000 s hg38.chr1_KI270759v1_alt 136212 250 + 425601 ATCCACAGACACTGGCAGACGGAAGCAGGGGAGGAGCCCTACTGCAGAGGCATCTGGC-CCTTTGAT-GGCTTT-TGGGTAACTTCTGATCTACAGGGCATCG-TATCAAAATGCAGACTGAGATTTAGTGGGTAGCCAGtgagcacttgctaggtgcc----aggcactggcttagggtatttca-ttaatcctgacaactatgaggtcagtattaccatttttaaaacaatactatggaaaac---------------------------------------------------agagccctagactc s panTro4.chr1 224887188 250 + 228333871 ATCCACAGGCGCTGGCAGACGGAAGCAGGGGAGGAGCCCTACTGCAGAGGCATCTGGC-CCTTTGAT-GGCTTT-TGGGTAACTTCTGATCTACAGGGCATCA-TATCAAAATGCAGACTGAGATTTAGTGGGTAGCCAGtgagcacttgctaggtgcc----aggcactggcttagggtatttca-ttaatcctgacaactatgaggtcagtattaccattttaaaaacaatactatggaaaac---------------------------------------------------agagccctagactc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140136857 251 - 143122389 ATCCACAGGCGCTGGCACACGGAAGCAGGGGAGGAGCCCTACTGAAGAGGCATCTGGCTCCTTTGAT-GGGTTT-TGGGTAATATCTGATCTACAGGGCATCA-TATCAAAATGCAGATTGAGATTTAGTGGGTAGCCAGtgagcacttgccaggtgcc----aggcactggctgagggtatttca-ttaatcctgacaactatgaggtcagtattaccattttaaaaacaatactatggaaaac---------------------------------------------------agagccctagactc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16852229 251 - 229590362 ATCCACAGGCGCTGGCAGACGGAAGCAGGGGAGGAGCCCGACTGCAGAGGCATCTGGCTCGTTTGAT-GGGTTT-TGGGTAACTTCTGATCTACAGGGCATCGCCATCAAAATGCAGATTGAGATTTAGTGAGTAGCCGGtgcgtacttgctaggtgcc----aggcactggcttggggtatttca-ttaatcctgacaactgtgaggtcgctattaccatttt-aaaacaatactatggcaaac---------------------------------------------------agagccctagactc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223612789 251 - 227556264 ATCCACAGGCGCTGGCAGACGGAAGCAGGGGAGGAGCCCGACTGCAGAGGCATCTGGCTCGTTTGAT-GGGTTT-TGGGTAACTTCTGATCTACAGGGCATCGCCATCGAAATGCAGATTGAGATTTAGTGAGTAGCCGGtgcgtacttgctaggtgcc----aggcactggcttggggtatttca-ttaatcctgacaactgtgaggtcggtattaccatttt-aaaacaatactatggcaaac---------------------------------------------------agagccctagactc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16663487 251 - 220367699 ATCCACAGGCGCTGGCAGGCGGAAGCAGGGGAGGAGCCCGACTGCAGAGGTATCTGGCTCGTTTGAT-GGGTTT-TAGGTAACTTCTGATCTACAGGGCATCGCCATCAAAATGCAGATTGAGATTTAGTGGGGAGCCGGTGGGTTCttgctaggtgcc----aggcactggctTAGGGTATTTCA-TTAATCCTGACAACTGTGACATCGGTATTACCATTTT-AAAACAATACTATGGCAAAC---------------------------------------------------AGAGCCCTAGACTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82462946 251 + 85787240 ATCCACAGGCGCTGGCAGACGGAAGCAGGGGAGGAGCCCGACCGCAGAGGCATCTGGCTCCTTTGAT-GGGTTT-TGGGTAACTTCTGATCTACAGGGCATCGCCATCAAAATGCAGATTGAGATTTAGTGGGTAGCCGGtgcgtacttgctaggtgcc----aggcactggcttagcatatttca-ttaatcctgacaactgtgaggtcggtattaccatttt-aaaacaatactatggcaaac---------------------------------------------------agagccctagactc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14141282 251 - 49578535 ATCCACAGGCGCTGGCAGACGGAAGCAGGGGAAGAGCCCTG-TGCAGAGCCATCTGGTTCCTCTGAT-GGGTTT-TGGGCAACTTCTGATCTACGGGGCATCGTCATCAGAATGCAGATTGAGATTTAGTGGGTGGCCattgagcacctgctaggtgcc----aggcgccggcttagggtatttcg-tgaatcctgacaactgtgaggtcagtactgccatttcaaaaacaatactatggaaaac---------------------------------------------------agagccctagactc i calJac3.chr19 C 0 C 0 s mm10.chr1 178733390 243 + 195471971 ATCCACAGGCTCGGGCAGTGGCTGCCAGGGGAAGAACTGGGCTGCAGAGGCATCTGGCTCCTTGGAT-GACTTTGGGGGTCACTTCTGACCTAAAGGGCATTATCACAAAAATGCAGATTAGGATTCAGTGGGAAGTCACTGT-CACCTGTTGTGTGCTAGGAAGGCACTGGGT-AGTTTAGCTCG-TGTATCCCCTCTACTGTGAGGTCGCCATTCTCATC---ACTGCAA---------AATC---------------------------------------------------AGTGTCCCAGGCTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36310115 301 + 80974532 ATCCACAGGCACAGGCAGATGGCTGCTGGGGATGAGCCTGGCTCCTGAGGCATCTGGCTCCTTTCATGGGGTTT-GGGGTCACTTC-GACCTAAAGGGCATTG---TCAGAGTGCAGATTCGGATCCTGcaggcagttcctgagcacctactatgtgcc----aggcaacaggtgaggtgatctcatttgatcctcacaccggtgaggtaggtatcaCCTTTTTAAAAAGACTATTATTgggatccctgggtggcgcagcggtttagcacctgcctttggcccagggcacgatcctggagacccgggatc i canFam3.chr7 C 0 I 114 e ponAbe2.chr1 226243653 1160 - 229942017 M a score=987727.000000 s hg38.chr1_KI270759v1_alt 136462 406 + 425601 cttaagaaa------------------------------------------------------------catacccagggcatgcggctgacaagtggcaggctgaagtcc----------------------------------ccacgcctggtagcctTTTTTCTGT-------TACTGCAAAGATGGAGGAAGAGGCGAGAGTTGCTTCCTGTCCGTGCTCTG-GGTACGTGTGAAATCTTGTGCATCTTCTTA---TACCGGGTGTTCAGGCACATGTGTGTTGAGAAGGGATG-CTGTTTTCCAGAAGACTCAAAAACAATGATGGGGGTCCTAGGTGACTTACtgttttaggtcggggtccccagaagcagatcttgatgaagtgaggatttctctgcaagtgatttattaagaatgtggtcctcagggaaactgggaagggagtaaaggaggcagga----aagggaaagagac----aagccaaaga------------tgagtcctttctcaggcaaaatcc s panTro4.chr1 224887438 406 + 228333871 cttaagaaa------------------------------------------------------------catacccagggcatgcggctgacaagtggcaggctgaggtcc----------------------------------CCACGCGTGGTGGCCTTTTTTCTGT-------TACTGCAAAGATGGAGGAAGAGGCGAGAGTTGCTTCCTGTCCGTGCTCTG-GGTACGTGTGAAATCTTGTGCATCTTCTTA---TACCGGGTGTTCATGCACATGTGTGTTGAGAAGGGATG-CTGTTTTCCAGAAGACTCAAAAACAATGATGGGGGTCCTAGGTGACTTACtgttttaggtcggggtccccagaagcagatcttgatgaagtgaggatttctctgcaagtgatttattaagaatgtggtcctcagggaaactgggaagggagtaaaggaggcagga----aagggaaagagac----aagccaaaga------------taagtccattctcaggcaaaatcc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137108 406 - 143122389 cttaagaaa------------------------------------------------------------catacccagggcacacggctgacaagtggcagGCTGAGGTCC----------------------------------CCACGCCTGGTGGCCTTTCTTCTGT-------TACTGCAAAGACGGAGGAAGTGGCGAAAGTTGCTTCCTGTCCGTGCTCTG-GGTACGTGTGAAATCTTGTGCATCTCTTTA---TACCGGGTGCTCATGCACATGTGTGTTGAGAAGGGATG-TTGTTTTCCAGAAGACTGAAAAACAATGATGGGGGTCCTAGGTGACTTACtgttttaggtcggagtccccagaagcagatcttgatgaagtgaggatttctctgcaagtgatttattaagaatgcggtcctcagggaaactgggaagggagtaaaggaggcagga----aagggaaagagac----aagccaaaga------------tgagtccattctcaggcaaaatcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16852480 404 - 229590362 cttaagaaa------------------------------------------------------------catacccagggcgcacggctgacaagtgggaggcggagatcc----------------------------------ccaggcctgGTGGCCTTTCCCCTGT-------TGCTGCAACGATGGAGGAAGAGGCGAGAGTTGCTTCCTGTCCATGCTCTG-GGTATGTGTGGAATCTTCTGCGTCTGCTCA---TACCGGGTGTTCACACACAGGTGTGTTGAAAAGGGATG-CTGTTTTCCAGGAGACTCAGAAGCAGTGATGGGGGTCCGCGGTGACTT-Ctgttttaggtcggggtccccagaagcagatcttgatgaactga-gatttctctgcaagtgattgattaagaatgtggccctcagggaaaccgggaagggagtaaaggaggcaaga----aagggaaagagac----aacccaaaga------------tgagtccattcgcaggcaaaatcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613040 404 - 227556264 cttaagaaa------------------------------------------------------------catacccagggcgcacggctgacaagtgggaggcggagatcc----------------------------------ccaggcctgGTGGCCTTTCCCCTGT-------TGCTGCAACGATGGAGGAAGAGGCGAGAGTTGCTTCCTGTCCATGCTCTG-GGTACGTGTGGAATCTTCTGCGTCTGCTCA---TACCGGGTGTTCACACACAGTTGTGTTGAAAAGGGATG-CTGTTTTCCAGGAGACTCAGAAGCAGTGATGGGGGTCCGCGGTGACTT-Ctgttttaggtcggggtccccagaagcagatcttgatgaactga-gatttctctgcaagtgattgattaagaatgtggccctcagggaaaccgggaagggagtaaaggaggcaaga----aagggaaagagac----aacccaaaga------------tgagtccattcgcaggcaaaatcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16663738 404 - 220367699 CTTGAGAAA------------------------------------------------------------CATACCCAGGGCACACGGCTGACAAGTGGGAGGCGGAGATCC----------------------------------CCAGGCCTGGCGGCCTTTCCCCTGT-------TGCTGCAGCGATGGAGGCAGAGGCGAGAGTTGCTTCCTGTCCATGCTCTG-GGTACGTGTGGAATCTTCTGCGTCTGCTCA---TACCGGGTGTTCACACACAGGTGTGTTGAAAAGGGATG-CTGTTTTCCAGGAGACTCAGAAGCAGTGATGGGGGTCCTCGGTGACTT-CTGTTTTAGGTCGGGGTCCCCAGAAGCAGATCTTGATGAAGTGA-GATTTCTCTGCAAGTGATTGATGAAGAATGTGGCCCTCAGGGAAACCGGGAAGGGAGTAAAGGAggcaaga----aagggaaagagac----aaCCCAAAGA------------TGAGTCCATTCGCAGGCAAAATCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463197 403 + 85787240 cttaagaaa------------------------------------------------------------catacccagggtgcacggctgacaagt-ggaggctgagatcc----------------------------------tcaagcctggttgcctTTCCCCTGT-------TGCTGCAACGATGGAGGAAGAGGCGAGAGTTGCTTCCTGTCCATGCTCTG-GGTATGTGCGAAATCTTTTGCGTCTGCTCA---TACCGGGTGTTCACACACAGGTGTGTTGAAAAGGGATG-CCGTTTTCCAGAAGACTCAGAAGCAGTGATGGGGGTCCTCGGTGACTT-Ctgttttaggtcggggtccccagaagcagatcttgatgaagtga-gatttctctgcaagtgattgattaagaatgtggtcctcagggaaactgggaagggagtaaaggaggcaaga----aagggaaagagac----aacccaaaga------------tgagtccattcgcaggcaaaatcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14141533 406 - 49578535 cttaagaaa------------------------------------------------------------catacccagggcacacggctgacaagcggcaggctgagatcc----------------------------------CCCAGCCTGGTGGCCTTTCCCCTGT-------TGCTGCAGAGATGGAGGAAGAGGTGAGAGTTGCTTCCTGTCCATGCTCTG-GGTCCGTTGAAATGCTTCTGCATCTGCTTA---TACC-GGTGTTCATGCACGTGCGTGTTGAGAAGGGAGG-CCGTTTTCCAGAAGACTCAAAGTAAATGATAGGGATCCTAGGTAACCTGCtgttttaagtcggggtcctcagaagcagatct---tgaagtggggatttctctgcaagtgatttattaagagtgtggctcccagggaaactgggaagagaatacaggaggcagga----aagggaaagagacaagaaagccaaaga------------tgagtccattctcaggcaaaatcT i calJac3.chr19 C 0 C 0 s mm10.chr1 178733633 405 + 195471971 GGTAAAGGA------------------------------------------------------------CACAGTTAGGCCACACTGTTAACAAGTGACAGGCTGAGTTCCAAGTGGCGAATAAGTGTAAACTGCTCGAACTATGTCACATCTTG----CTGTGTCATCT-------TTCTGCGAAGATGGAGG---------------------GTACATGGCATATGGAAAAAAAAAAAGTCTCTGCATTTGCTTAGCCTACCTGG-GTACCTGGGTAGATGTGTTGAAAAGA---G-TATTTTTCCTGAATAATAGACATCAGTGGTGGCAGCCCTAAGCATGCG-CTGGTTTCCATTGGGTTCCCCAGACCTACACCC---AGAAGTAAGGATGCCTATGGAA---------TAAGAATGTGGTCCCTAGGGTGTGTGAGAACATTAAATGGGAAATAAAAATAGAAGAAGAAAAAAG----AAGCCAGAGA-----------CTGAGACAGTTCT--AGATAAATCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36310530 436 + 80974532 cttaaaaaataaaaGATTTAAAAAGACtattatttaaaaaaaaaaaaaaGAAAGAAAGAAACCAGAGCCCAGACCCAAGTCACTCTGCTAATG-----------GGGATCG----------------------------------CCCAGCTTGATGGCCTCTGTTCTGTGCCATGGTGCCACAAAGGTGGAGGACGAAGTGAAAGTTGCTTCCTGCCTATGCCCTG-GGGGTGTGTGA----------------CCT---CACCTGG-GTGCCTGTGCCCGTGTGTCGAAAAGGGAGGACACTTTCCCAGAGTACCCCAAATAGACTATGGAAGTACTAAGTGACCTGCTGTATAGTA---------ctagaagcagatct---ggaagtgaggcttccagtgcaggtgatttattaagaatgtggtccccggggacctggtgaa----------gtggcagga----gttggggaaggag----aagccaaagaaaggtccatctctgtatccttcctttggcagcatcc i canFam3.chr7 I 114 I 67 e ponAbe2.chr1 226243653 1160 - 229942017 M a score=103223.000000 s hg38.chr1_KI270759v1_alt 136868 40 + 425601 ggtggacagcggcttttagcttcagcctgaccatactggg s panTro4.chr1 224887844 40 + 228333871 ggtggagagcagcttttagcttcagcctgaccatactggg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137514 40 - 143122389 agcggagagcggcttttagcttcagcctgaccatactggg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16852884 40 - 229590362 ggcggggagtggcttttagcttcagcctgaccatactggg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613444 40 - 227556264 ggcggggagtggcttttagcttcagcctgaccatactggg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664142 40 - 220367699 GGCGGGGAGTGGCTTTTAGCTTCAACCTGACCATACTGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463600 40 + 85787240 ggcgggcagtggcttttagcttcagcctgaccatactggg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14141939 40 - 49578535 GGTGGAGAGCGGCTTTTGGCTTCAGCCTGACAGTGCTGCG i calJac3.chr19 C 0 C 0 s mm10.chr1 178734038 39 + 195471971 GGTAGTGGGTGGCATCT-GCTCCAGCCTGACTCTACTTGG i mm10.chr1 C 0 C 0 e canFam3.chr7 36310966 67 + 80974532 I e ponAbe2.chr1 226243653 1160 - 229942017 M a score=70551.000000 s hg38.chr1_KI270759v1_alt 136908 39 + 425601 gaactc-tgggggt--------ttgtcctgatgggaagcagcagaggt s panTro4.chr1 224887884 39 + 228333871 gaactc-tggggat--------ttgtcctgatgggaagcagcagaggt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137554 39 - 143122389 gaactc-tggCGGT--------TGGTCCTGACAGGAAGCAGCAGAGGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16852924 39 - 229590362 gaactc-cgggggt--------ttgtcctgacggagggcagcagaggt i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223613484 39 - 227556264 gaactc-cgggggt--------ttgtcctgacggagggcagcagaggt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664182 39 - 220367699 GAACTC-CGGGGGT--------TTGTCCTGACGGAGGGCAGCAGAGGT i papAnu2.chr1 C 0 I 29 s chlSab2.chr25 82463640 39 + 85787240 gaactc-caggggt--------ttgtcctgacgggaggcagcagaggt i chlSab2.chr25 C 0 C 0 s mm10.chr1 178734077 46 + 195471971 GAACCCTCAGGGGTATACAGAGTTGTCCTGACCTGGGG--ACAGACAT i mm10.chr1 C 0 C 0 e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e ponAbe2.chr1 226243653 1160 - 229942017 M a score=2100.000000 s hg38.chr1_KI270759v1_alt 136947 1 + 425601 g s panTro4.chr1 224887923 1 + 228333871 g i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137593 1 - 143122389 G i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613523 1 - 227556264 g i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16664250 1 - 220367699 G i papAnu2.chr1 I 29 C 0 s chlSab2.chr25 82463679 1 + 85787240 g i chlSab2.chr25 C 0 C 0 s mm10.chr1 178734123 1 + 195471971 G i mm10.chr1 C 0 C 0 e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e ponAbe2.chr1 226243653 1160 - 229942017 M a score=182.000000 s hg38.chr1_KI270759v1_alt 136948 3 + 425601 -agc s panTro4.chr1 224887924 3 + 228333871 -agc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137594 3 - 143122389 -AGC i nomLeu3.chr5 C 0 I 27 s papAnu2.chr1 16664251 3 - 220367699 -GGC i papAnu2.chr1 C 0 C 0 s mm10.chr1 178734124 3 + 195471971 AAG- i mm10.chr1 C 0 C 0 e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C e macFas5.chr1 223613524 1 - 227556264 I e ponAbe2.chr1 226243653 1160 - 229942017 M a score=-8042.000000 s hg38.chr1_KI270759v1_alt 136951 2 + 425601 g-------------------------------------------------------------g s panTro4.chr1 224887927 63 + 228333871 ggtcatctcccTCACTGTTCACCTACAGCGGTCATCTCCCTCACTGTTCACCTAGAGGAGCTG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137624 2 - 143122389 -------------------------------------------------------------GG i nomLeu3.chr5 I 27 C 0 s papAnu2.chr1 16664254 2 - 220367699 -------------------------------------------------------------GG i papAnu2.chr1 C 0 C 0 s mm10.chr1 178734127 2 + 195471971 -------------------------------------------------------------GG i mm10.chr1 C 0 I 734 e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C e macFas5.chr1 223613524 1 - 227556264 I e ponAbe2.chr1 226243653 1160 - 229942017 M a score=11570.000000 s hg38.chr1_KI270759v1_alt 136953 23 + 425601 tcatctcccTCACTGTTCACCCT s panTro4.chr1 224887990 23 + 228333871 TCATCTCCCTCACTGTTCACCCT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137626 23 - 143122389 TCATCTCCCTCACTGTTCACCCC i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16664256 23 - 220367699 TCATCTCCCTCACCGTTCACCTA i papAnu2.chr1 C 0 T 58 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C e macFas5.chr1 223613524 1 - 227556264 I e ponAbe2.chr1 226243653 1160 - 229942017 M a score=14260.000000 s hg38.chr1_KI270759v1_alt 136976 27 + 425601 GCAGTCATCTCCCTCACTGTTCACCTA s panTro4.chr1 224888013 27 + 228333871 GCAGTCATCTCCCTCACTGTTCACCTA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137649 27 - 143122389 GCGGTCATCTCCCTCACTGTTCACTTA i nomLeu3.chr5 C 0 I 3 s macFas5.chr1 223613525 27 - 227556264 gcggtcatctccctcaccgttcaCCTA i macFas5.chr1 I 1 T 29 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C e papAnu2.chr1 16664279 58 - 220367699 T e ponAbe2.chr1 226243653 1160 - 229942017 M a score=6633.000000 s hg38.chr1_KI270759v1_alt 137003 9 + 425601 GAGCTGTCA s panTro4.chr1 224888040 9 + 228333871 GAGCTGTCA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137679 9 - 143122389 GAGTGGTCA i nomLeu3.chr5 I 3 C 0 s macFas5.chr1 223613523 9 - 227556264 gagcggtca i macFas5.chr1 T 29 C 0 s papAnu2.chr1 16664221 9 - 220367699 GAGCAGTCA i papAnu2.chr1 T 58 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C e ponAbe2.chr1 226243653 1160 - 229942017 M a score=27683.000000 s hg38.chr1_KI270759v1_alt 137012 20 + 425601 TCTCCCTCACTGTTCACCTA s panTro4.chr1 224888049 20 + 228333871 TCTCCCTCACTGTTCACCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226244833 20 - 229942017 TCTCCCTCACTGTTCACCTA i ponAbe2.chr1 M 1160 C 0 s nomLeu3.chr5 140137688 20 - 143122389 TCTCCCTCACTGTTCACCTA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613532 20 - 227556264 tctccctcaccgttcaCCTA i macFas5.chr1 C 0 T 29 s papAnu2.chr1 16664230 20 - 220367699 TCTCCCTCACCGTTCACCTA i papAnu2.chr1 C 0 T 29 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C a score=5708.000000 s hg38.chr1_KI270759v1_alt 137032 7 + 425601 GAGCTGT s panTro4.chr1 224888069 7 + 228333871 GAGCGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226244853 7 - 229942017 CAGCTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137708 7 - 143122389 GGACggt i nomLeu3.chr5 C 0 T 92 s macFas5.chr1 223613523 7 - 227556264 gagcggt i macFas5.chr1 T 29 C 0 s papAnu2.chr1 16664221 7 - 220367699 GAGCAGT i papAnu2.chr1 T 29 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C a score=17369.000000 s hg38.chr1_KI270759v1_alt 137039 23 + 425601 CATCTCCCTCACTGTTCACCTAC s panTro4.chr1 224888076 23 + 228333871 CATCTCCCTCACTGTTCACCTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226244860 21 - 229942017 CATCTCCCTCACTGTTCACC--C i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223613530 23 - 227556264 catctccctcaccgttcaCCTAG i macFas5.chr1 C 0 T 29 s papAnu2.chr1 16664228 23 - 220367699 CATCTCCCTCACCGTTCACCTAG i papAnu2.chr1 C 0 T 29 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C e nomLeu3.chr5 140137715 92 - 143122389 T a score=22143.000000 s hg38.chr1_KI270759v1_alt 137062 29 + 425601 AGCGGTCATCTCCCTCACTGTTCACCTAC s panTro4.chr1 224888099 29 + 228333871 AGCTGTCATCTTCCTCACTGTTCACCCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226244881 29 - 229942017 TGCGGTCGTCTCCCTCACTGTTCACCTAC i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223613524 29 - 227556264 agcggtcatctccctcaccgttcaCCTAG i macFas5.chr1 T 29 T 29 s papAnu2.chr1 16664222 29 - 220367699 AGCAGTCATCTCCCTCACCGTTCACCTAG i papAnu2.chr1 T 29 T 29 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C e nomLeu3.chr5 140137715 92 - 143122389 T a score=23696.000000 s hg38.chr1_KI270759v1_alt 137091 29 + 425601 AGCGGTCATCTCCCTCACTGTTCACCTAC s panTro4.chr1 224888128 29 + 228333871 AGCTGTCATCTCCCTCACTGTTCACCTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226244910 29 - 229942017 AGCTGTCGTCTCCCTCACTGTTCACCTAC i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223613524 29 - 227556264 agcggtcatctccctcaccgttcaCCTAG i macFas5.chr1 T 29 T 29 s papAnu2.chr1 16664222 29 - 220367699 AGCAGTCATCTCCCTCACCGTTCACCTAG i papAnu2.chr1 T 29 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C e nomLeu3.chr5 140137715 92 - 143122389 T a score=22205.000000 s hg38.chr1_KI270759v1_alt 137120 29 + 425601 AGC-GGTCATCTCCCTCACTGTTCACCTAC s panTro4.chr1 224888157 30 + 228333871 AGCAGGTCATCTCCCTCACTGTTCACCTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226244939 29 - 229942017 AGC-TGTCGTCTCCCTCACTGTTCACCTAC i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223613524 29 - 227556264 agc-ggtcatctccctcaccgttcaCCTAG i macFas5.chr1 T 29 C 0 s papAnu2.chr1 16664251 29 - 220367699 GGC-GGTCATCTCCCTCACCGTTCACCTAG i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16852963 1 - 229590362 I e chlSab2.chr25 82463680 0 + 85787240 C e nomLeu3.chr5 140137715 92 - 143122389 T a score=33872.000000 s hg38.chr1_KI270759v1_alt 137149 29 + 425601 AGCGGTCATCTCCCTCACTGTTCACCTAC s panTro4.chr1 224888187 29 + 228333871 AGCGGTCATCTCCCTCACTGTTCACCCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226244968 27 - 229942017 AGCTGTCATCTCCCTCACTGTTCACCC-- i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16852964 29 - 229590362 agcggtcatctccctcaccgttcaCCTAG i rheMac3.chr1 I 1 T 29 s macFas5.chr1 223613553 29 - 227556264 AGCGGTCATCTCCCTCACCGTTCACCTAG i macFas5.chr1 C 0 T 58 s papAnu2.chr1 16664280 29 - 220367699 GGCGGTCATCTCCCTCACCGTTCACCTAG i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463680 0 + 85787240 C e nomLeu3.chr5 140137715 92 - 143122389 T a score=49568.000000 s hg38.chr1_KI270759v1_alt 137178 28 + 425601 AGCGGTCATCTCCCTCACTGTTCACCTA s panTro4.chr1 224888216 28 + 228333871 AGCGGTCATCTCCCTCACTGTTCACTTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226244995 28 - 229942017 TGCGGTCGTCTCCCTCACTGTTCACCTA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16852964 28 - 229590362 agcggtcatctccctcaccgttcaCCTA i rheMac3.chr1 T 29 T 29 s macFas5.chr1 223613524 28 - 227556264 agcggtcatctccctcaccgttcaCCTA i macFas5.chr1 T 58 C 0 s papAnu2.chr1 16664309 28 - 220367699 GGCGGTCACCTCCCTCACCGTTCACCTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463680 28 + 85787240 agcggtcatcgccctcaccgttcaCCTA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e nomLeu3.chr5 140137715 92 - 143122389 T a score=50302.000000 s hg38.chr1_KI270759v1_alt 137206 29 + 425601 GAG---CGGTCATCTCCCTCACTGTTCACCTA s panTro4.chr1 224888244 32 + 228333871 GAGGAGCGGTCATCTCCCTCACTGTTCACCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245023 29 - 229942017 CAG---CGGTCATCTCCCTCACTGTTCACCTA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16852963 29 - 229590362 gag---cggtcatctccctcaccgttcaCCTA i rheMac3.chr1 T 29 T 29 s macFas5.chr1 223613552 29 - 227556264 GAG---CGGTCATCTCCCTCACCGTTCACCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664337 29 - 220367699 GGG---CGGTCATCTCCCTCACCGTTCACCTA i papAnu2.chr1 C 0 T 145 s chlSab2.chr25 82463708 29 + 85787240 GGG---CGGTCATCGCCCTCACCGTTCACCTA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e nomLeu3.chr5 140137715 92 - 143122389 T a score=6129.000000 s hg38.chr1_KI270759v1_alt 137235 4 + 425601 GAGC s panTro4.chr1 224888276 4 + 228333871 GAGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245052 4 - 229942017 CAGC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16852963 4 - 229590362 gagc i rheMac3.chr1 T 29 C 0 s macFas5.chr1 223613581 4 - 227556264 GAGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664221 4 - 220367699 GAGC i papAnu2.chr1 T 145 C 0 s chlSab2.chr25 82463737 4 + 85787240 GGGC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e nomLeu3.chr5 140137715 92 - 143122389 T a score=111909.000000 s hg38.chr1_KI270759v1_alt 137239 87 + 425601 GGTCATCTCCCTCACTGTTCACCTAGAGCGGTCATCTCCCTCACTGTTCACCTAGAGCGGTCATCTCCCTCACTGTTCACCTAGAGC s panTro4.chr1 224888280 87 + 228333871 GGTCATCTCCCTCACTGTTCACCCAGAGCTGTCATCTCCCTCACTGTTCACCTAGAGCGGTCATCTCCCTCACTGTTCACCTAGAGC i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16852967 87 - 229590362 ggtcatctccctcaccgttcaCCTAGAGCGGTCATCTCCCTCACCGTTCACCTAGAGCGGTCATCTCCCTCACCGTTCACCTAGAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613585 87 - 227556264 GGTCATCTCCCTCACCGTTCACCTAGAGTGGACATCTCCCTCACCGTTCACCTAGAGTGGACATCTCCCTCACTGTTCACCTAGAGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664225 87 - 220367699 AGTCATCTCCCTCACCGTTCACCTAGGGCGGTCATCTCCCTCACCGTTCACCTAGGGCGGTCATCTCCCTCACCGTTCACCTAGGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463741 87 + 85787240 GGACATCTCCCTCACCGTTCACCTAGGGCGGTCATCTCCCTCACCGTTCACCTAGGGCGGTCATCTCCCTCACCGTTCACCTAGGGC i chlSab2.chr25 C 0 T 29 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e nomLeu3.chr5 140137715 92 - 143122389 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=34996.000000 s hg38.chr1_KI270759v1_alt 137326 28 + 425601 GGTCATCTCCCTCACTGTTCACCTAGAG s panTro4.chr1 224888367 28 + 228333871 TGTCATCTCCCTCACTGTTCACCCAGAG i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16853054 28 - 229590362 GGACATCTCCCTCACCGTTCACCTAGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613672 28 - 227556264 GGTCATCTCCCTCACCGTTCACCTAGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664312 28 - 220367699 GGTCACCTCCCTCACCGTTCACCTAGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463799 28 + 85787240 GGTCATCTCCCTCACCGTTCACCTAGGG i chlSab2.chr25 T 29 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e nomLeu3.chr5 140137715 92 - 143122389 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=42882.000000 s hg38.chr1_KI270759v1_alt 137354 27 + 425601 TGGTCATCTCCCTCACTGTTCACCTAG s panTro4.chr1 224888395 27 + 228333871 CTGTCATCTCCCTCACTGTTCACCCAG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137623 25 - 143122389 CGGTCATCTCCCTCACTGTTCACCC-- i nomLeu3.chr5 T 92 C 0 s rheMac3.chr1 16853082 27 - 229590362 TGGACATCTCCCTCACCGTTCACCTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613700 27 - 227556264 TGGACATCTCCCTCACCGTTCACCTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664340 27 - 220367699 CGGTCATCTCCCTCACCGTTCACCTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463827 27 + 85787240 CGGTCATCTCCCTCACCGTTCACCTAG i chlSab2.chr25 C 0 T 84 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e ponAbe2.chr1 226245056 0 - 229942017 C a score=4437.000000 s hg38.chr1_KI270759v1_alt 137381 6 + 425601 AGCGGT s panTro4.chr1 224888422 6 + 228333871 AGCGGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137648 6 - 143122389 CGCGGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853109 6 - 229590362 AGTGGA i rheMac3.chr1 C 0 T 29 s macFas5.chr1 223613727 6 - 227556264 AGTGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664367 6 - 220367699 GGCGGT i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463854 84 + 85787240 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=26214.000000 s hg38.chr1_KI270759v1_alt 137387 19 + 425601 CATCTCCCTCACTGTTCAC s panTro4.chr1 224888428 19 + 228333871 CATCTCCCTCACTGTTCAC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137654 19 - 143122389 CATCTCCCTCACTGTTCAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853086 19 - 229590362 CATCTCCCTCACCGTTCAC i rheMac3.chr1 T 29 C 0 s macFas5.chr1 223613733 19 - 227556264 CATCTCCCTCACCGTTCAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664373 19 - 220367699 CATCTCCCTCACCGTTCAC i papAnu2.chr1 C 0 I 92 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463854 84 + 85787240 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=3447.000000 s hg38.chr1_KI270759v1_alt 137406 5 + 425601 TTAGA s panTro4.chr1 224888447 5 + 228333871 CCAGA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137673 5 - 143122389 TTAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853105 5 - 229590362 CTAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613752 5 - 227556264 CTAGA i macFas5.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463854 84 + 85787240 T e papAnu2.chr1 16664392 92 - 220367699 I e ponAbe2.chr1 226245056 0 - 229942017 C a score=-2557.000000 s hg38.chr1_KI270759v1_alt 137411 5 + 425601 --GGAGA s panTro4.chr1 224888452 2 + 228333871 --GC--- i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137678 5 - 143122389 --GGAGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853110 5 - 229590362 GTGGA-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613757 5 - 227556264 GTGGA-- i macFas5.chr1 C 0 T 58 s papAnu2.chr1 16664484 3 - 220367699 --GGA-- i papAnu2.chr1 I 92 I 2 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463854 84 + 85787240 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=1104.000000 s hg38.chr1_KI270759v1_alt 137416 3 + 425601 GGT s panTro4.chr1 224888454 3 + 228333871 GGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137683 3 - 143122389 GGT i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16664489 3 - 220367699 GGA i papAnu2.chr1 I 2 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853115 0 - 229590362 C e chlSab2.chr25 82463854 84 + 85787240 T e macFas5.chr1 223613762 58 - 227556264 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=32048.000000 s hg38.chr1_KI270759v1_alt 137419 23 + 425601 CATCTCCCTCACTGTTCACCTAG s panTro4.chr1 224888457 23 + 228333871 CATCTCCCTCACTGTTCACCTAG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137686 23 - 143122389 CATCTCCCTCACTGTTCACCTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853115 23 - 229590362 CATCTCCCTCACTGTTCACCTAG i rheMac3.chr1 C 0 T 143 s macFas5.chr1 223613704 23 - 227556264 CATCTCCCTCACCGTTCACCTAG i macFas5.chr1 T 58 C 0 s papAnu2.chr1 16664492 23 - 220367699 CATCTCCCTCACCGTTCACCTAG i papAnu2.chr1 C 0 T 29 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463854 84 + 85787240 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=1436.000000 s hg38.chr1_KI270759v1_alt 137442 6 + 425601 AGCTGT s panTro4.chr1 224888480 6 + 228333871 AGCTGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137709 6 - 143122389 GACggt i nomLeu3.chr5 C 0 T 61 s macFas5.chr1 223613727 6 - 227556264 AGTGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664486 6 - 220367699 AGTGGA i papAnu2.chr1 T 29 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e chlSab2.chr25 82463854 84 + 85787240 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=20004.000000 s hg38.chr1_KI270759v1_alt 137448 23 + 425601 CATCTCCCTCACTGTTCACTTAG s panTro4.chr1 224888486 23 + 228333871 CATCTCCCTCACTGTTCACCCAG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137654 23 - 143122389 CATCTCCCTCACTGTTCACTTAG i nomLeu3.chr5 T 61 C 0 s macFas5.chr1 223613733 23 - 227556264 CATCTCCCTCACCGTTCACCTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664492 23 - 220367699 CATCTCCCTCACCGTTCACCTAG i papAnu2.chr1 C 0 T 119 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e chlSab2.chr25 82463854 84 + 85787240 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=-3390.000000 s hg38.chr1_KI270759v1_alt 137471 6 + 425601 ---AGGAGA s panTro4.chr1 224888509 3 + 228333871 ---AGC--- i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137677 6 - 143122389 ---AGGAGT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613756 6 - 227556264 AGTGGA--- i macFas5.chr1 C 0 T 235 s papAnu2.chr1 16664396 4 - 220367699 --TAGA--- i papAnu2.chr1 T 119 I 2 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e chlSab2.chr25 82463854 84 + 85787240 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=37817.000000 s hg38.chr1_KI270759v1_alt 137477 32 + 425601 GGTCATCTCCCTCACTGTTCACCTAGAGCTGT s panTro4.chr1 224888512 32 + 228333871 GGTCATCTCCCTCACTGTTCACCTAGAGCGGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137683 32 - 143122389 GGTCATCTCCCTCACTGTTCACCTAGGACggt i nomLeu3.chr5 C 0 T 68 s macFas5.chr1 223613527 32 - 227556264 ggtcatctccctcaccgttcaCCTAGAGCGGT i macFas5.chr1 T 235 C 0 s papAnu2.chr1 16664402 32 - 220367699 GGACATCTCCCTCACCGTCCAGCTAGAGTGGA i papAnu2.chr1 I 2 C 0 s chlSab2.chr25 82463770 32 + 85787240 GGTCATCTCCCTCACCGTTCACCTAGGGCGGT i chlSab2.chr25 T 84 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=20305.000000 s hg38.chr1_KI270759v1_alt 137509 22 + 425601 CATCTCCCTCACTGTTCACCTA s panTro4.chr1 224888544 22 + 228333871 CATCTCCCTCACTGTTCACCTA i panTro4.chr1 C 0 C 0 s macFas5.chr1 223613559 22 - 227556264 CATCTCCCTCACCGTTCACCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664434 22 - 220367699 CATCTCCCTCACCGTTCACCTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463802 22 + 85787240 CATCTCCCTCACCGTTCACCTA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e nomLeu3.chr5 140137715 68 - 143122389 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=33203.000000 s hg38.chr1_KI270759v1_alt 137531 28 + 425601 CAGCGGTCATCTCCCTCACTGTTCACTT s panTro4.chr1 224888566 28 + 228333871 GAGCTGTCATCTCCCTCACTGTTCACCT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137647 28 - 143122389 CCGCGGTCATCTCCCTCACTGTTCACTT i nomLeu3.chr5 T 68 C 0 s macFas5.chr1 223613581 28 - 227556264 GAGCGGTCATCTCCCTCACCGTTCACCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664456 28 - 220367699 GAGTGGTCATCTCCCTCACCGTTCACCT i papAnu2.chr1 C 0 T 261 s chlSab2.chr25 82463824 28 + 85787240 GGGCGGTCATCTCCCTCACCGTTCACCT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=1910.000000 s hg38.chr1_KI270759v1_alt 137559 2 + 425601 AG s panTro4.chr1 224888594 2 + 228333871 AG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137675 2 - 143122389 AG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613609 2 - 227556264 AG i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82463852 2 + 85787240 AG i chlSab2.chr25 C 0 T 87 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e papAnu2.chr1 16664484 261 - 220367699 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=-559.000000 s hg38.chr1_KI270759v1_alt 137561 6 + 425601 AGGAGA s panTro4.chr1 224888596 3 + 228333871 AGC--- i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137677 6 - 143122389 AGGAGT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613611 6 - 227556264 AGTGGA i macFas5.chr1 C 0 T 92 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e chlSab2.chr25 82463854 87 + 85787240 T e papAnu2.chr1 16664484 261 - 220367699 T e ponAbe2.chr1 226245056 0 - 229942017 C a score=12618.000000 s hg38.chr1_KI270759v1_alt 137567 23 + 425601 GGTCATCTCCCTCACTGTTCACC s panTro4.chr1 224888599 23 + 228333871 TGTCATCTCCCTCACTGTTCACC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245056 23 - 229942017 GGTCATCTCCCTCACTGTTCACC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137683 23 - 143122389 GGTCATCTCCCTCACTGTTCACC i nomLeu3.chr5 C 0 T 86 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e chlSab2.chr25 82463854 87 + 85787240 T e papAnu2.chr1 16664484 261 - 220367699 T e macFas5.chr1 223613617 92 - 227556264 T a score=600.000000 s hg38.chr1_KI270759v1_alt 137590 1 + 425601 C s panTro4.chr1 224888622 1 + 228333871 C i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245079 1 - 229942017 C i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137620 1 - 143122389 C i nomLeu3.chr5 T 86 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e chlSab2.chr25 82463854 87 + 85787240 T e papAnu2.chr1 16664484 261 - 220367699 T e macFas5.chr1 223613617 92 - 227556264 T a score=-1660.000000 s hg38.chr1_KI270759v1_alt 137591 1 + 425601 -T s panTro4.chr1 224888623 1 + 228333871 -T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245080 1 - 229942017 -T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137621 1 - 143122389 -C i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82463767 1 + 85787240 G- i chlSab2.chr25 T 87 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T e papAnu2.chr1 16664484 261 - 220367699 T e macFas5.chr1 223613617 92 - 227556264 T a score=2100.000000 s hg38.chr1_KI270759v1_alt 137592 1 + 425601 G s panTro4.chr1 224888624 1 + 228333871 G i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245081 1 - 229942017 G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137622 1 - 143122389 G i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613525 1 - 227556264 g i macFas5.chr1 T 92 C 0 s papAnu2.chr1 16664223 1 - 220367699 G i papAnu2.chr1 T 261 C 0 s chlSab2.chr25 82463768 1 + 85787240 G i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 143 - 229590362 T a score=62104.000000 s hg38.chr1_KI270759v1_alt 137593 25 + 425601 CGGTCATCTCCCTCACTGTTCACCT s panTro4.chr1 224888625 25 + 228333871 CGGTCATCTCCCTCACTGTTCACCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245082 25 - 229942017 CGGTCGTCTCCCTCACTGTTCACCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137623 25 - 143122389 CGGTCATCTCCCTCACTGTTCACCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16852995 25 - 229590362 CGGTCATCTCCCTCACCGTTCACCT i rheMac3.chr1 T 143 C 0 s macFas5.chr1 223613526 25 - 227556264 cggtcatctccctcaccgttcaCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664224 25 - 220367699 CAGTCATCTCCCTCACCGTTCACCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463769 25 + 85787240 CGGTCATCTCCCTCACCGTTCACCT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C a score=2017.000000 s hg38.chr1_KI270759v1_alt 137618 2 + 425601 AA s panTro4.chr1 224888650 2 + 228333871 AG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245107 2 - 229942017 AC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16853020 2 - 229590362 AG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613551 2 - 227556264 AG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664249 2 - 220367699 AG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463794 2 + 85787240 AG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e nomLeu3.chr5 140137648 0 - 143122389 C a score=67289.000000 s hg38.chr1_KI270759v1_alt 137620 28 + 425601 AGCGGTCATCTCCCTCACTGTTCACCTA s panTro4.chr1 224888652 28 + 228333871 AGCGGTCATCTCCCTCACTGTTCACCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245109 28 - 229942017 AGCTGTCGTCTCCCTCACTGTTCACCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137648 28 - 143122389 CGCGGTCATCTCCCTCACTGTTCACTTA i nomLeu3.chr5 C 0 T 51 s rheMac3.chr1 16853022 28 - 229590362 AGCGGTCATCTCCCTCACCGTTCACCTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613553 28 - 227556264 AGCGGTCATCTCCCTCACCGTTCACCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664251 28 - 220367699 GGCGGTCATCTCCCTCACCGTTCACCTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463796 28 + 85787240 GGCGGTCATCTCCCTCACCGTTCACCTA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C a score=3550.000000 s hg38.chr1_KI270759v1_alt 137648 3 + 425601 GAG s panTro4.chr1 224888680 3 + 228333871 GAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245137 3 - 229942017 CAG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16853050 3 - 229590362 GAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613581 3 - 227556264 GAG i macFas5.chr1 C 0 I 144 s papAnu2.chr1 16664279 3 - 220367699 GGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463824 3 + 85787240 GGG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e nomLeu3.chr5 140137676 51 - 143122389 T a score=624.000000 s hg38.chr1_KI270759v1_alt 137651 2 + 425601 CT s panTro4.chr1 224888683 2 + 228333871 CG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245140 2 - 229942017 CT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16853053 2 - 229590362 TG i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16664282 2 - 220367699 CG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463827 2 + 85787240 CG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e macFas5.chr1 223613584 144 - 227556264 I e nomLeu3.chr5 140137676 51 - 143122389 T a score=29509.000000 s hg38.chr1_KI270759v1_alt 137653 22 + 425601 GTCATCTCCCTCACTGTTCACC s panTro4.chr1 224888685 22 + 228333871 GTCATCTCCCTCACTGTTCACC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137625 22 - 143122389 GTCATCTCCCTCACTGTTCACC i nomLeu3.chr5 T 51 C 0 s rheMac3.chr1 16853055 22 - 229590362 GACATCTCCCTCACCGTTCACC i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16664284 22 - 220367699 GTCATCTCCCTCACCGTTCACC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463829 22 + 85787240 GTCATCTCCCTCACCGTTCACC i chlSab2.chr25 C 0 T 83 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e macFas5.chr1 223613584 144 - 227556264 I e ponAbe2.chr1 226245142 0 - 229942017 C a score=187.000000 s hg38.chr1_KI270759v1_alt 137675 1 + 425601 C s panTro4.chr1 224888707 1 + 228333871 T i panTro4.chr1 C 0 I 2 s nomLeu3.chr5 140137647 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853077 1 - 229590362 T i rheMac3.chr1 C 0 T 113 s papAnu2.chr1 16664306 1 - 220367699 T i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463851 83 + 85787240 T e macFas5.chr1 223613584 144 - 227556264 I e ponAbe2.chr1 226245142 0 - 229942017 C a score=-414.000000 s hg38.chr1_KI270759v1_alt 137676 1 + 425601 T s panTro4.chr1 224888710 1 + 228333871 A i panTro4.chr1 I 2 C 0 s nomLeu3.chr5 140137648 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16664307 1 - 220367699 A i papAnu2.chr1 C 0 I 2 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e macFas5.chr1 223613584 144 - 227556264 I e ponAbe2.chr1 226245142 0 - 229942017 C a score=21547.000000 s hg38.chr1_KI270759v1_alt 137677 27 + 425601 GCGGTCATCTCTCTCACTGTTCACCTA s panTro4.chr1 224888711 27 + 228333871 GCGGTCATCTCCCTCACTGTTCACATA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137649 27 - 143122389 GCGGTCATCTCCCTCACTGTTCACTTA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613728 27 - 227556264 GTGGACATCTCCCTCACCGTTCACCTA i macFas5.chr1 I 144 C 0 s papAnu2.chr1 16664310 27 - 220367699 GCGGTCACCTCCCTCACCGTTCACCTA i papAnu2.chr1 I 2 I 63 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e ponAbe2.chr1 226245142 0 - 229942017 C a score=-1996.000000 s hg38.chr1_KI270759v1_alt 137704 7 + 425601 GAGGAGA--- s panTro4.chr1 224888738 4 + 228333871 AAGC------ i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137676 4 - 143122389 GAGG------ i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613755 7 - 227556264 GAGT---GGA i macFas5.chr1 C 0 T 178 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e papAnu2.chr1 16664337 63 - 220367699 I e ponAbe2.chr1 226245142 0 - 229942017 C a score=-341.000000 s hg38.chr1_KI270759v1_alt 137711 25 + 425601 GGTCATCTCCCTCACTGTTCACCC---T s panTro4.chr1 224888742 28 + 228333871 GATCATCTCCCTCACTGATCACCTAAGA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137680 1 - 143122389 ---------------------------A i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e papAnu2.chr1 16664337 63 - 220367699 I e macFas5.chr1 223613762 178 - 227556264 T e ponAbe2.chr1 226245142 0 - 229942017 C a score=600.000000 s hg38.chr1_KI270759v1_alt 137736 1 + 425601 G s panTro4.chr1 224888770 1 + 228333871 G i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137681 1 - 143122389 G i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16664400 1 - 220367699 G i papAnu2.chr1 I 63 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e macFas5.chr1 223613762 178 - 227556264 T e ponAbe2.chr1 226245142 0 - 229942017 C a score=24031.000000 s hg38.chr1_KI270759v1_alt 137737 33 + 425601 CGGTCATCTCCCTCACTGTTCACCTAGAGCGGT s panTro4.chr1 224888771 33 + 228333871 CGGTCATCTCCCTCACTGTTCACCTAGAGCTGT i panTro4.chr1 C 0 I 570 s nomLeu3.chr5 140137682 33 - 143122389 TGGTCATCTCCCTCACTGTTCACCTAGGACggt i nomLeu3.chr5 C 0 T 89 s macFas5.chr1 223613584 33 - 227556264 CGGTCATCTCCCTCACCGTTCACCTAGAGTGGA i macFas5.chr1 T 178 C 0 s papAnu2.chr1 16664401 33 - 220367699 TGGACATCTCCCTCACCGTCCAGCTAGAGTGGA i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e ponAbe2.chr1 226245142 0 - 229942017 C a score=10699.000000 s hg38.chr1_KI270759v1_alt 137770 22 + 425601 CATCTCCCTCACTGTTCATCTA s panTro4.chr1 224889374 22 + 228333871 CATCTCCCTCTCTGTTCACTTA i panTro4.chr1 I 570 C 0 s macFas5.chr1 223613617 22 - 227556264 CATCTCCCTCACCGTTCACCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664434 22 - 220367699 CATCTCCCTCACCGTTCACCTA i papAnu2.chr1 C 0 T 233 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e nomLeu3.chr5 140137715 89 - 143122389 T e ponAbe2.chr1 226245142 0 - 229942017 C a score=1347.000000 s hg38.chr1_KI270759v1_alt 137792 7 + 425601 GAGGAGA s panTro4.chr1 224889396 7 + 228333871 GAGGAGA i panTro4.chr1 C 0 C 0 s macFas5.chr1 223613639 7 - 227556264 GAGTGGA i macFas5.chr1 C 0 T 121 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e papAnu2.chr1 16664456 233 - 220367699 T e nomLeu3.chr5 140137715 89 - 143122389 T e ponAbe2.chr1 226245142 0 - 229942017 C a score=200.000000 s hg38.chr1_KI270759v1_alt 137799 2 + 425601 GG s panTro4.chr1 224889403 2 + 228333871 GG i panTro4.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e papAnu2.chr1 16664456 233 - 220367699 T e macFas5.chr1 223613646 121 - 227556264 T e nomLeu3.chr5 140137715 89 - 143122389 T e ponAbe2.chr1 226245142 0 - 229942017 C a score=4188.000000 s hg38.chr1_KI270759v1_alt 137801 23 + 425601 TCATCTCCCTCACTGTTCATCCT--- s panTro4.chr1 224889405 25 + 228333871 TCATCTCCCTCACTGTTCA-CCTAAA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137626 23 - 143122389 TCATCTCCCTCACTGTTCACCCC--- i nomLeu3.chr5 T 89 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e papAnu2.chr1 16664456 233 - 220367699 T e macFas5.chr1 223613646 121 - 227556264 T e ponAbe2.chr1 226245142 0 - 229942017 C a score=2476.000000 s hg38.chr1_KI270759v1_alt 137824 3 + 425601 GCG s panTro4.chr1 224889430 3 + 228333871 GCG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137649 3 - 143122389 GCG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613525 3 - 227556264 gcg i macFas5.chr1 T 121 C 0 s papAnu2.chr1 16664223 3 - 220367699 GCA i papAnu2.chr1 T 233 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e ponAbe2.chr1 226245142 0 - 229942017 C a score=34778.000000 s hg38.chr1_KI270759v1_alt 137827 27 + 425601 GTCATCTCCCTCACTGTTCACCTAGAG s panTro4.chr1 224889433 27 + 228333871 GTCATCTCCCTCACTGTTCACCTAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245142 27 - 229942017 GTCGTCTCCCTCACTGTTCACCTACAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137652 27 - 143122389 GTCATCTCCCTCACTGTTCACTTAGAG i nomLeu3.chr5 C 0 T 56 s macFas5.chr1 223613528 27 - 227556264 gtcatctccctcaccgttcaCCTAGAG i macFas5.chr1 C 0 I 58 s papAnu2.chr1 16664226 27 - 220367699 GTCATCTCCCTCACCGTTCACCTAGGG i papAnu2.chr1 C 0 I 116 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T a score=30486.000000 s hg38.chr1_KI270759v1_alt 137854 24 + 425601 TGGTCATCTCCCTCACTGTTCACC s panTro4.chr1 224889460 24 + 228333871 CGGTCATCTCCCTCACTGTTCACC i panTro4.chr1 C 0 I 2 s ponAbe2.chr1 226245169 24 - 229942017 CTGTCATCTCCCTCACTGTTCACC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137623 24 - 143122389 CGGTCATCTCCCTCACTGTTCACC i nomLeu3.chr5 T 56 C 0 s macFas5.chr1 223613613 24 - 227556264 TGGACATCTCCCTCACCGTTCACC i macFas5.chr1 I 58 C 0 s papAnu2.chr1 16664369 24 - 220367699 CGGTCATCTCCCTCACCGTTCACC i papAnu2.chr1 I 116 T 170 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T a score=-1543.000000 s hg38.chr1_KI270759v1_alt 137878 2 + 425601 CT- s panTro4.chr1 224889486 2 + 228333871 CA- i panTro4.chr1 I 2 C 0 s ponAbe2.chr1 226245193 2 - 229942017 CT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137647 2 - 143122389 CC- i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613637 2 - 227556264 -TA i macFas5.chr1 C 0 T 114 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853078 113 - 229590362 T e chlSab2.chr25 82463851 83 + 85787240 T e papAnu2.chr1 16664393 170 - 220367699 T a score=136338.000000 s hg38.chr1_KI270759v1_alt 137880 59 + 425601 GCGGTCATCTCCCTCACCGTTCACCTA---GAGCGGTCATCTCCCTCACTGTTCACCTAGAG s panTro4.chr1 224889488 59 + 228333871 ACGGTCATCTCCCTCACTGTTCACCTA---GAGCGGTCATCTCCCTCACTGTTCACCTAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245195 56 - 229942017 GCGGTCGTCTCCCTCACTGTTCACCTA---CAGCGGTCATCTCCCTCACTGTTCACCTA--- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137649 62 - 143122389 GCGGTCATCTCCCTCACTGTTCACTTAGAGGAGTGGTCATCTCCCTCACTGTTCACCTAGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16852965 59 - 229590362 gcggtcatctccctcaccgttcaCCTA---GAGCGGTCATCTCCCTCACCGTTCACCTAGAG i rheMac3.chr1 T 113 I 58 s macFas5.chr1 223613525 59 - 227556264 gcggtcatctccctcaccgttcaCCTA---GAGCGGTCATCTCCCTCACCGTTCACCTAGAG i macFas5.chr1 T 114 C 0 s papAnu2.chr1 16664223 59 - 220367699 GCAGTCATCTCCCTCACCGTTCACCTA---GGGCGGTCATCTCCCTCACCGTTCACCTAGGG i papAnu2.chr1 T 170 I 29 s chlSab2.chr25 82463768 59 + 85787240 GCGGTCATCTCCCTCACCGTTCACCTA---GGGCGGTCATCTCCCTCACCGTTCACCTAGGG i chlSab2.chr25 T 83 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C a score=6141.000000 s hg38.chr1_KI270759v1_alt 137939 4 + 425601 CGGT s panTro4.chr1 224889547 4 + 228333871 CGGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137711 4 - 143122389 Cggt i nomLeu3.chr5 C 0 T 61 s rheMac3.chr1 16853082 4 - 229590362 TGGA i rheMac3.chr1 I 58 C 0 s macFas5.chr1 223613584 4 - 227556264 CGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664311 4 - 220367699 CGGT i papAnu2.chr1 I 29 C 0 s chlSab2.chr25 82463827 4 + 85787240 CGGT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e ponAbe2.chr1 226245251 0 - 229942017 C a score=38325.000000 s hg38.chr1_KI270759v1_alt 137943 22 + 425601 CATCTCTCTCACTGTTCACCTA s panTro4.chr1 224889551 22 + 228333871 CATCTCCCTCAGTGTTCACCCA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137654 22 - 143122389 CATCTCCCTCACTGTTCACTTA i nomLeu3.chr5 T 61 C 0 s rheMac3.chr1 16853086 22 - 229590362 CATCTCCCTCACCGTTCACCTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613588 22 - 227556264 CATCTCCCTCACCGTTCACCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664315 22 - 220367699 CACCTCCCTCACCGTTCACCTA i papAnu2.chr1 C 0 I 58 s chlSab2.chr25 82463831 22 + 85787240 CATCTCCCTCACCGTTCACCTA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e ponAbe2.chr1 226245251 0 - 229942017 C a score=600.000000 s hg38.chr1_KI270759v1_alt 137965 1 + 425601 G s panTro4.chr1 224889573 1 + 228333871 G i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137676 1 - 143122389 G i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82463853 1 + 85787240 G i chlSab2.chr25 C 0 T 173 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853108 0 - 229590362 C e papAnu2.chr1 16664337 58 - 220367699 I e macFas5.chr1 223613610 0 - 227556264 C e ponAbe2.chr1 226245251 0 - 229942017 C a score=-6897.000000 s hg38.chr1_KI270759v1_alt 137966 6 + 425601 ----AGGAGA s panTro4.chr1 224889574 3 + 228333871 ----AGC--- i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137677 6 - 143122389 ----AGGAGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853108 2 - 229590362 ---GA----- i rheMac3.chr1 C 0 T 86 s macFas5.chr1 223613610 2 - 227556264 ---GA----- i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16664395 5 - 220367699 CTAGA----- i papAnu2.chr1 I 58 I 2 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463854 173 + 85787240 T e ponAbe2.chr1 226245251 0 - 229942017 C a score=1200.000000 s hg38.chr1_KI270759v1_alt 137972 2 + 425601 GG s panTro4.chr1 224889577 2 + 228333871 GG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137683 2 - 143122389 GG i nomLeu3.chr5 C 0 T 59 s papAnu2.chr1 16664402 2 - 220367699 GG i papAnu2.chr1 I 2 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e macFas5.chr1 223613612 1 - 227556264 I e ponAbe2.chr1 226245251 0 - 229942017 C a score=7967.000000 s hg38.chr1_KI270759v1_alt 137974 22 + 425601 TCATCTCCCTCACTGTTCACCC s panTro4.chr1 224889579 22 + 228333871 TCATCTCCCTCACTGTTCACCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245251 1 - 229942017 ---------------------C i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137626 22 - 143122389 TCATCTCCCTCACTGTTCACCC i nomLeu3.chr5 T 59 C 0 s papAnu2.chr1 16664404 22 - 220367699 ACATCTCCCTCACCGTCCAGCT i papAnu2.chr1 C 0 T 87 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e macFas5.chr1 223613612 1 - 227556264 I a score=-331.000000 s hg38.chr1_KI270759v1_alt 137996 1 + 425601 T s panTro4.chr1 224889601 1 + 228333871 T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245252 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137648 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e papAnu2.chr1 16664426 87 - 220367699 T e macFas5.chr1 223613612 1 - 227556264 I a score=66346.000000 s hg38.chr1_KI270759v1_alt 137997 56 + 425601 GCGGTCATCTCCCTCACTGTTCACCTA---GAGCGGTCATCTCCCTCACTGTTCATCTA s panTro4.chr1 224889602 56 + 228333871 GCGGTCATCTCCCTCACTGTTCACCCA---GAGCGGTCATCTCCCTCACTGTTCACCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245253 56 - 229942017 GCGGTCATCTCCCTCACTGTTCACCTA---CAGCGGTCATCTCCCTCACTGTTCACCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137649 59 - 143122389 GCGGTCATCTCCCTCACTGTTCACTTAGAGGAGTGGTCATCTCCCTCACTGTTCACCTA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613613 55 - 227556264 -TGGACATCTCCCTCACCGTTCACCTA---GAGTGGACATCTCCCTCACTGTTCACCTA i macFas5.chr1 I 1 T 84 s papAnu2.chr1 16664339 56 - 220367699 GCGGTCATCTCCCTCACCGTTCACCTA---GGGCGGTCATCTCCCTCACCGTTCACCAC i papAnu2.chr1 T 87 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T a score=-1240.000000 s hg38.chr1_KI270759v1_alt 138053 1 + 425601 -G s panTro4.chr1 224889658 1 + 228333871 -G i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245309 1 - 229942017 -G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137708 1 - 143122389 -G i nomLeu3.chr5 C 0 T 116 s papAnu2.chr1 16664395 1 - 220367699 C- i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e macFas5.chr1 223613668 84 - 227556264 T a score=-534.000000 s hg38.chr1_KI270759v1_alt 138054 2 + 425601 -AG s panTro4.chr1 224889659 2 + 228333871 -AG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245310 2 - 229942017 -AG i ponAbe2.chr1 C 0 C 0 s papAnu2.chr1 16664396 2 - 220367699 TA- i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e macFas5.chr1 223613668 84 - 227556264 T e nomLeu3.chr5 140137709 116 - 143122389 T a score=5907.000000 s hg38.chr1_KI270759v1_alt 138056 28 + 425601 GAGAGGTCATCTCCCTCACTGTTCACCC s nomLeu3.chr5 140137593 28 - 143122389 GAGCGGTCATCTCCCTCACTGTTCACCC i nomLeu3.chr5 T 116 C 0 s papAnu2.chr1 16664398 28 - 220367699 GAGTGGACATCTCCCTCACCGTCCAGCT i papAnu2.chr1 C 0 T 144 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e macFas5.chr1 223613668 84 - 227556264 T e ponAbe2.chr1 226245312 0 - 229942017 C e panTro4.chr1 224889661 0 + 228333871 C a score=-31.000000 s hg38.chr1_KI270759v1_alt 138084 1 + 425601 T s nomLeu3.chr5 140137621 1 - 143122389 C i nomLeu3.chr5 C 0 T 27 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e papAnu2.chr1 16664426 144 - 220367699 T e macFas5.chr1 223613668 84 - 227556264 T e ponAbe2.chr1 226245312 0 - 229942017 C e panTro4.chr1 224889661 0 + 228333871 C a score=100.000000 s hg38.chr1_KI270759v1_alt 138085 1 + 425601 G s nomLeu3.chr5 140137595 1 - 143122389 G i nomLeu3.chr5 T 27 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e papAnu2.chr1 16664426 144 - 220367699 T e macFas5.chr1 223613668 84 - 227556264 T e ponAbe2.chr1 226245312 0 - 229942017 C e panTro4.chr1 224889661 0 + 228333871 C a score=6756.000000 s hg38.chr1_KI270759v1_alt 138086 27 + 425601 CGGTCATCTCCCTCACTGTTCACCCTG s nomLeu3.chr5 140137596 27 - 143122389 CGGTCATCTCCCTCACTGTTCACCCCG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613584 27 - 227556264 CGGTCATCTCCCTCACCGTTCACCTAG i macFas5.chr1 T 84 I 31 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e papAnu2.chr1 16664426 144 - 220367699 T e ponAbe2.chr1 226245312 0 - 229942017 C e panTro4.chr1 224889661 0 + 228333871 C a score=11094.000000 s hg38.chr1_KI270759v1_alt 138113 53 + 425601 CGGTCATCTCCCTCACTGTTCACCCTGCG--GTCATCTCCCTCACTGTTCACCCT----- s panTro4.chr1 224889661 55 + 228333871 CGGTCATCTCCCTCACTGTTCACCTAGAGCTGTCATCTCCCTCACTGTTCACCTA----- i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137623 58 - 143122389 CGGTCATCTCCCTCACTGTTCACCCCGCG--GTCATCTCCCTCACTGTTCACTTAGAGGA i nomLeu3.chr5 C 0 T 86 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e papAnu2.chr1 16664426 144 - 220367699 T e macFas5.chr1 223613611 31 - 227556264 I e ponAbe2.chr1 226245312 0 - 229942017 C a score=300.000000 s hg38.chr1_KI270759v1_alt 138166 1 + 425601 G s panTro4.chr1 224889716 1 + 228333871 G i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137595 1 - 143122389 G i nomLeu3.chr5 T 86 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e papAnu2.chr1 16664426 144 - 220367699 T e macFas5.chr1 223613611 31 - 227556264 I e ponAbe2.chr1 226245312 0 - 229942017 C a score=38334.000000 s hg38.chr1_KI270759v1_alt 138167 53 + 425601 CG--GTCATCTCCCTCACTGTTCACC--CTGCGGTCATCTCCCTCACTGTTCACCCT s panTro4.chr1 224889717 55 + 228333871 AGCTGTCATCTCCCTCACTGTTCACC--CTGCGGTCATCTCCCTCACTGTTCACCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245312 55 - 229942017 --CAGTCATCTCCCTCACTGTTCACCTACAGCGGTCATCTCCCTCACTGTTCACCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137596 53 - 143122389 --CGGTCATCTCCCTCACTGTTCACC--CCGCGGTCATCTCCCTCACTGTTCACCCC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613642 55 - 227556264 --TGGACATCTCCCTCACTGTTCACCTAGAGCGGTCATCTCCCTCACCGTTCACCTA i macFas5.chr1 I 31 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e chlSab2.chr25 82463854 173 + 85787240 T e papAnu2.chr1 16664426 144 - 220367699 T a score=1500.000000 s hg38.chr1_KI270759v1_alt 138220 1 + 425601 G s panTro4.chr1 224889772 1 + 228333871 G i panTro4.chr1 C 0 I 2 s ponAbe2.chr1 226245367 1 - 229942017 G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137649 1 - 143122389 G i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613697 1 - 227556264 G i macFas5.chr1 C 0 T 56 s chlSab2.chr25 82463681 1 + 85787240 g i chlSab2.chr25 T 173 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853110 86 - 229590362 T e papAnu2.chr1 16664426 144 - 220367699 T a score=130554.000000 s hg38.chr1_KI270759v1_alt 138221 62 + 425601 CGGTCATCTCCCTCACTGTTCACCTA---GAGCGGTCATCTCCCTCACTGTTCACCTAGAGCGGT s panTro4.chr1 224889775 62 + 228333871 TGGTCATCTCCCTCACTGTTCACCTA---GAGCCGTCATCTCCCTCACTGTTCACCTAGAGCTGT i panTro4.chr1 I 2 C 0 s ponAbe2.chr1 226245368 62 - 229942017 CGGTCATCTCCCTCACTGTTCACCTA---CAGCTGTCGTCTCCCTCACTGTTCACCTACAGCTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137650 65 - 143122389 CGGTCATCTCCCTCACTGTTCACTTAGAGGAGTGGTCATCTCCCTCACTGTTCACCTAGGACggt i nomLeu3.chr5 C 0 T 29 s rheMac3.chr1 16853024 62 - 229590362 CGGTCATCTCCCTCACCGTTCACCTA---GAGTGGACATCTCCCTCACCGTTCACCTAGAGTGGA i rheMac3.chr1 T 86 C 0 s macFas5.chr1 223613642 62 - 227556264 TGGACATCTCCCTCACTGTTCACCTA---GAGCGGTCATCTCCCTCACCGTTCACCTAGAGTGGA i macFas5.chr1 T 56 C 0 s papAnu2.chr1 16664282 62 - 220367699 CGGTCATCTCCCTCACCGTTCACCTA---GGGCGGTCACCTCCCTCACCGTTCACCTAGGGCGGT i papAnu2.chr1 T 144 C 0 s chlSab2.chr25 82463682 62 + 85787240 cggtcatcgccctcaccgttcaCCTA---GGGCGGTCATCGCCCTCACCGTTCACCTAGGGCGGA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C a score=53731.000000 s hg38.chr1_KI270759v1_alt 138283 25 + 425601 CATCTCCCTCACTGTTCACCTAGAG s panTro4.chr1 224889837 25 + 228333871 CATCTCCCTCACTGTTCACCTAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245430 24 - 229942017 CGTCTCCCTCACTGTTCACCTACA- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137686 25 - 143122389 CATCTCCCTCACTGTTCACCTAGGA i nomLeu3.chr5 T 29 T 61 s rheMac3.chr1 16853086 25 - 229590362 CATCTCCCTCACCGTTCACCTAGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613704 25 - 227556264 CATCTCCCTCACCGTTCACCTAGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664344 25 - 220367699 CATCTCCCTCACCGTTCACCTAGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463744 24 + 85787240 CATCTCCCTCACCGTTCACCTAGG- i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C a score=29544.000000 s hg38.chr1_KI270759v1_alt 138308 27 + 425601 CGGTCATCTCCCTCACTGTTCATCTAG s panTro4.chr1 224889862 27 + 228333871 CTGTCATCTCCCTCACTGTTCACCTAG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140137650 27 - 143122389 CGGTCATCTCCCTCACTGTTCACTTAG i nomLeu3.chr5 T 61 C 0 s rheMac3.chr1 16853111 27 - 229590362 TGGACATCTCCCTCACTGTTCACCTAG i rheMac3.chr1 C 0 T 173 s macFas5.chr1 223613729 27 - 227556264 TGGACATCTCCCTCACCGTTCACCTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664369 27 - 220367699 CGGTCATCTCCCTCACCGTTCACCACC i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463768 0 + 85787240 C e ponAbe2.chr1 226245454 0 - 229942017 C a score=329.000000 s hg38.chr1_KI270759v1_alt 138335 3 + 425601 AGG s panTro4.chr1 224889889 3 + 228333871 AGC i panTro4.chr1 C 0 I 1 s nomLeu3.chr5 140137677 3 - 143122389 AGG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613756 3 - 227556264 AGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664396 1 - 220367699 --T i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 173 - 229590362 T e chlSab2.chr25 82463768 0 + 85787240 C e ponAbe2.chr1 226245454 0 - 229942017 C a score=684.000000 s hg38.chr1_KI270759v1_alt 138338 3 + 425601 AGA s nomLeu3.chr5 140137680 3 - 143122389 AGT i nomLeu3.chr5 C 0 T 86 s macFas5.chr1 223613759 3 - 227556264 GGA i macFas5.chr1 C 0 T 92 s papAnu2.chr1 16664397 3 - 220367699 AGA i papAnu2.chr1 C 0 I 2 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 173 - 229590362 T e chlSab2.chr25 82463768 0 + 85787240 C e ponAbe2.chr1 226245454 0 - 229942017 C e panTro4.chr1 224889892 1 + 228333871 I a score=5034.000000 s hg38.chr1_KI270759v1_alt 138341 25 + 425601 GGTCATCTCCCTCACTGTTCACCCT s nomLeu3.chr5 140137597 25 - 143122389 GGTCATCTCCCTCACTGTTCACCCC i nomLeu3.chr5 T 86 C 0 s papAnu2.chr1 16664402 25 - 220367699 GGACATCTCCCTCACCGTCCAGCTA i papAnu2.chr1 I 2 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 173 - 229590362 T e chlSab2.chr25 82463768 0 + 85787240 C e macFas5.chr1 223613762 92 - 227556264 T e ponAbe2.chr1 226245454 0 - 229942017 C e panTro4.chr1 224889892 1 + 228333871 I a score=1000.000000 s hg38.chr1_KI270759v1_alt 138366 1 + 425601 G s ponAbe2.chr1 226245454 1 - 229942017 G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137622 1 - 143122389 G i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613670 1 - 227556264 G i macFas5.chr1 T 92 C 0 s papAnu2.chr1 16664427 1 - 220367699 G i papAnu2.chr1 C 0 T 36 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 173 - 229590362 T e chlSab2.chr25 82463768 0 + 85787240 C e panTro4.chr1 224889892 1 + 228333871 I a score=558.000000 s hg38.chr1_KI270759v1_alt 138367 2 + 425601 CG s ponAbe2.chr1 226245455 2 - 229942017 CT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137623 2 - 143122389 CG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613671 2 - 227556264 CG i macFas5.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 173 - 229590362 T e chlSab2.chr25 82463768 0 + 85787240 C e papAnu2.chr1 16664428 36 - 220367699 T e panTro4.chr1 224889892 1 + 228333871 I a score=21088.000000 s hg38.chr1_KI270759v1_alt 138369 23 + 425601 GTCATCTCCCTCACTGTTCACCC s panTro4.chr1 224889893 23 + 228333871 GTCATCTCCCTCACTGTTCACCC i panTro4.chr1 I 1 C 0 s ponAbe2.chr1 226245457 23 - 229942017 GTCATCTCCCTCACTGTTCACCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137625 23 - 143122389 GTCATCTCCCTCACTGTTCACCC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223613673 23 - 227556264 GTCATCTCCCTCACCGTTCACCT i macFas5.chr1 C 0 T 171 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 173 - 229590362 T e chlSab2.chr25 82463768 0 + 85787240 C e papAnu2.chr1 16664428 36 - 220367699 T a score=180.000000 s hg38.chr1_KI270759v1_alt 138392 1 + 425601 T s panTro4.chr1 224889916 1 + 228333871 T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245480 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137648 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853138 173 - 229590362 T e chlSab2.chr25 82463768 0 + 85787240 C e papAnu2.chr1 16664428 36 - 220367699 T e macFas5.chr1 223613696 171 - 227556264 T a score=4200.000000 s hg38.chr1_KI270759v1_alt 138393 2 + 425601 GC s panTro4.chr1 224889917 2 + 228333871 GC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245481 2 - 229942017 GC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137649 2 - 143122389 GC i nomLeu3.chr5 C 0 T 27 s rheMac3.chr1 16852965 2 - 229590362 gc i rheMac3.chr1 T 173 C 0 s macFas5.chr1 223613525 2 - 227556264 gc i macFas5.chr1 T 171 C 0 s chlSab2.chr25 82463768 2 + 85787240 GC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e papAnu2.chr1 16664428 36 - 220367699 T a score=35976.000000 s hg38.chr1_KI270759v1_alt 138395 19 + 425601 GGTCATCTCCCTCACTGTT s panTro4.chr1 224889919 19 + 228333871 GGTCATCTCCCTCACTGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245483 19 - 229942017 GGTCATCTCTCTCACTGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137624 19 - 143122389 GGTCATCTCCCTCACTGTT i nomLeu3.chr5 T 27 C 0 s rheMac3.chr1 16852967 19 - 229590362 ggtcatctccctcaccgtt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613527 19 - 227556264 ggtcatctccctcaccgtt i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82463770 19 + 85787240 GGTCATCTCCCTCACCGTT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e papAnu2.chr1 16664428 36 - 220367699 T a score=12642.000000 s hg38.chr1_KI270759v1_alt 138414 5 + 425601 CACCT s panTro4.chr1 224889938 5 + 228333871 CACCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245502 5 - 229942017 CACCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137643 5 - 143122389 CACCC i nomLeu3.chr5 C 0 I 3 s rheMac3.chr1 16852986 5 - 229590362 caCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613546 5 - 227556264 caCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664392 5 - 220367699 CACCT i papAnu2.chr1 T 36 C 0 s chlSab2.chr25 82463789 5 + 85787240 CACCT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C a score=86032.000000 s hg38.chr1_KI270759v1_alt 138419 60 + 425601 AGAGCGGTCATCTCCCTTACTGTTCACCTAGAGCGGTCATCTCCCTCACTGTTCACCTAG s panTro4.chr1 224889943 60 + 228333871 AGAGCGGTCATCTCCCTCACTGTTCACCTAGAGCGGTCATCTCCCTCACTGTTCACTTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245507 36 - 229942017 ACAGCGGTCATCTCCCTCACTGTTCACCTAGGATGG------------------------ i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16852991 60 - 229590362 AGAGCGGTCATCTCCCTCACCGTTCACCTAGAGCGGTCATCTCCCTCACCGTTCACCTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613551 60 - 227556264 AGAGCGGTCATCTCCCTCACCGTTCACCTAGAGCGGTCATCTCCCTCACCGTTCACCTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664397 60 - 220367699 AGAGTGGACATCTCCCTCACCGTCCAGCTAGAGTGGACATCTCCCTCACCGTTCACCTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463794 60 + 85787240 AGGGCGGTCATCTCCCTCACCGTTCACCTAGGGCGGTCATCTCCCTCACCGTTCACCTAG i chlSab2.chr25 C 0 T 26 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e nomLeu3.chr5 140137648 3 - 143122389 I a score=2000.000000 s hg38.chr1_KI270759v1_alt 138479 3 + 425601 AGT s panTro4.chr1 224890003 3 + 228333871 AGG i panTro4.chr1 C 0 I 3 s rheMac3.chr1 16853051 3 - 229590362 AGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613611 3 - 227556264 AGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664457 3 - 220367699 AGT i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463854 26 + 85787240 T e nomLeu3.chr5 140137648 3 - 143122389 I e ponAbe2.chr1 226245543 0 - 229942017 C a score=29797.000000 s hg38.chr1_KI270759v1_alt 138482 30 + 425601 GGTCATCTCCCTCACTGTTCACCTAGAGGA s panTro4.chr1 224890009 29 + 228333871 GGTCATCTCCCTCACTGTTCACCCTGCGG- i panTro4.chr1 I 3 C 0 s nomLeu3.chr5 140137651 30 - 143122389 GGTCATCTCCCTCACTGTTCACTTAGAGGA i nomLeu3.chr5 I 3 C 0 s rheMac3.chr1 16853054 30 - 229590362 GGACATCTCCCTCACCGTTCACCTAGAGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613614 30 - 227556264 GGACATCTCCCTCACCGTTCACCTAGAGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664460 29 - 220367699 GGTCATCTCCCTCACCGTTCACCTGGAGT- i papAnu2.chr1 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e canFam3.chr7 36310966 67 + 80974532 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463854 26 + 85787240 T e ponAbe2.chr1 226245543 0 - 229942017 C a score=697.000000 s hg38.chr1_KI270759v1_alt 138512 2 + 425601 GA s nomLeu3.chr5 140137681 2 - 143122389 GT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853084 2 - 229590362 GA i rheMac3.chr1 C 0 I 29 s macFas5.chr1 223613644 2 - 227556264 GA i macFas5.chr1 C 0 I 116 s canFam3.chr7 36311033 2 + 80974532 gg i canFam3.chr7 I 67 C 0 e mm10.chr1 178734129 734 + 195471971 I e calJac3.chr19 14141979 0 - 49578535 C e chlSab2.chr25 82463854 26 + 85787240 T e papAnu2.chr1 16664489 0 - 220367699 C e ponAbe2.chr1 226245543 0 - 229942017 C e panTro4.chr1 224890038 0 + 228333871 C a score=576.000000 s hg38.chr1_KI270759v1_alt 138514 3 + 425601 GGT s panTro4.chr1 224890038 1 + 228333871 --T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245543 2 - 229942017 -TT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137683 3 - 143122389 GGT i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16664489 3 - 220367699 GGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463828 3 + 85787240 GGT i chlSab2.chr25 T 26 C 0 s canFam3.chr7 36311035 3 + 80974532 ggc i canFam3.chr7 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e calJac3.chr19 14141979 0 - 49578535 C e rheMac3.chr1 16853086 29 - 229590362 I e macFas5.chr1 223613646 116 - 227556264 I a score=51264.000000 s hg38.chr1_KI270759v1_alt 138517 22 + 425601 CATCTCCCTCACTGTTCACCTA s panTro4.chr1 224890039 22 + 228333871 CATCTCCCTCACTGTTCACCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245545 20 - 229942017 CA--TCCTTGGTTGTTCACCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137686 22 - 143122389 CATCTCCCTCACTGTTCACCTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853115 22 - 229590362 CATCTCCCTCACTGTTCACCTA i rheMac3.chr1 I 29 C 0 s macFas5.chr1 223613762 22 - 227556264 CATCTCCCTCACTGTTCACCTA i macFas5.chr1 I 116 C 0 s papAnu2.chr1 16664492 22 - 220367699 CATCTCCCTCACCGTTCACCTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82463831 22 + 85787240 CATCTCCCTCACCGTTCACCTA i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36311038 22 + 80974532 tgtcatactccctgccccccca i canFam3.chr7 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e calJac3.chr19 14141979 0 - 49578535 C a score=105771.000000 s hg38.chr1_KI270759v1_alt 138539 41 + 425601 GGATggtt-gccgtggggaggaggcgggtggtgaatcccagg s panTro4.chr1 224890061 41 + 228333871 GGATggtt-accatggggaggaggtgggtggtgaatcccagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245565 42 - 229942017 GGATGGTTCACCGTGGGGAGGAGGCGTGTAGTGAATCCCGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137708 41 - 143122389 GGACggtt-gccgtggggaagaggcgggtggtgaatcccagg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853137 41 - 229590362 GGATggtt-gtagtggggaggaggcaggtagtgaatcccagg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613784 41 - 227556264 GGATGGTT-ATAGtggggaggaggcaggtagtgaatcccagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664514 39 - 220367699 GGATGGTT-GTGGTGGGGA-GAGGC-GGTAGTGAATCCCAGG i papAnu2.chr1 C 0 M 313 s chlSab2.chr25 82463853 40 + 85787240 GGATGGTT-Gtggtggggaggaggt-ggtagtgaatcccagg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14141979 41 - 49578535 GGATGGTT-GCCGTGGGGAAGAGGCAGGTAATGAATCCCAGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36311060 30 + 80974532 ttaagttt-gcagag-----------agcagtcaatcccggg i canFam3.chr7 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I a score=172045.000000 s hg38.chr1_KI270759v1_alt 138580 80 + 425601 ccttttcagcggcc----ctccaggcctgcaggttcaagcaggctccagtggcctgagggcaggcctttgagaaagag--------gctgac s panTro4.chr1 224890102 80 + 228333871 ccttttcagtggct----cttcaggcctgcaggctcaagcaggctccagtggcctgagggcaggcctttgagaaagag--------gctgac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245607 80 - 229942017 CCCTTTCAGCGGCT----CTCCAGGCCTGCAGGTTCAAGCAGGCTTCAGTGGCCTGAGGGCAGGCCTTTGAGAAAGAG--------GCTGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137749 79 - 143122389 ccctttcagcggct----ctccaggcctgcagg-tcaagcaggctccagtggcctgagggcaggcctttgagaaagag--------gctgac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853178 79 - 229590362 ccctttcagtgact----ctccagacccgcagg-tcaagcagactccagtggcctgagggcaagcctttgagaaagag--------gctgac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613825 79 - 227556264 ccctttcagtgact----ctccagacccgcagg-tcaagcagactccagtggcctgagggcaagcctttgagaaagag--------gctgac i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82463893 79 + 85787240 ccctttcagtgact----ctccagacccacagg-tcaagcagactccagtggcctgagggcaagcctttgagaaagag--------gctgac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14142020 62 - 49578535 CCCTTTCAGCAGCTCTCCCTCCAGGCCTGCAGG-TCA---------------------GTCAGGCCCTTGAAAAAGAG--------GCTGGC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36311090 87 + 80974532 ccttctggtcagct----ccctgcaaatgtagc-cagagcaggctccagcagcccaagtccaggccttcagaaaagagcagcaggtgcaggt i canFam3.chr7 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I e papAnu2.chr1 16664553 313 - 220367699 M a score=494243.000000 s hg38.chr1_KI270759v1_alt 138660 170 + 425601 tgttagaagcagaagccctt---gaaggagcacacaga-----------------aggggtCTGGGCTAAGCAGCAGCGTGGCGACCTACACCCGCCCCTCCTCCGTACCTTGCAGGAGGCAGCGGGTGCTGAGGA-----AATGGGA--AAAGAGCCGCAAGATTAACCAGATACCCGTGGTATTTTCAAGCAACA s panTro4.chr1 224890182 170 + 228333871 tgttagaagcagaagccctt---gaaggagcacacaga-----------------aggggtCTGGGCTAAGCGGCAGCGTAGTGACCTACACCTGCCCCTCCTCCGTTCCTTGCGGGAGGAAGCGGGCGCTGAGGA-----AATGGGA--AAAGAGCCGCAAGATTAACCAGATACCCCTGGTATTTTCAAGCAACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245687 170 - 229942017 TGTTAGAAGCAGAAGCCCTT---GAAGGAGCACACAGA-----------------AGGGGTCTGGGCTAAGCGGCAGCGTGGTGACCTGCACCCGCCCCTCCTCCGTACCTTGCGGGACGAAGCGGGCGCTGAGGA-----AATGGGA--AAAGAGCCGCAAGATTAACCAGATACCCCGGGTATTTTCAAGCAACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137828 170 - 143122389 tgttagaagcagaaaccctt---gaaggagcacacaga-----------------aggggtCTGGGCTGAGCGGCAGCGTGGTGACCTACACCCGCCCCTCCTCCGTACCTTGTGGGAGGAAGCAGGCGCTGAGGA-----AATGGGA--AAAGAGCCGCAAGATTAACCAGATACCCCTGGTATTTTCAAGCAACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853257 168 - 229590362 tgttagaagcagaagccctt---gaaggagcacacaga-----------------aGGAGTCTGGGCTGAG-GGCTGTGTGGTGACCTACACCCG-CCCTCCTCCGTACCTCGCAGGAGGAAGCGGGCGCTGAGGA-----AATGGGA--AAAGAGCTGCAAGATTAACCAGATACCCCTGGTATTTTCAAGCAACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223613904 168 - 227556264 tgttagaagcagaagccctt---gaaggagcacacaga-----------------aGGAGTCTGGGCTGAG-GGCTGTGTGGTGACCTACACCCG-CCCTCCTCCGTACCTCGCAGGAGGAAGCGGGCGCTGAGGA-----AATGGGA--AAAGAGCTGCAAGATTAACCAGATACCCCTGGTATTTTCAAGCAACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16664866 168 - 220367699 tATTAGAAGCAGAAGCCCTT---GAAGGAGCACACAGA-----------------AGGAGTCTGGGCTGAG-GGCTGTGTGATGACCTACACCCG-CCCTCCTCCGTACCTCGCAGGAGGAAGCGGGCGCTGAGGA-----AATGGGA--AAAGAGCTGCAAGATTAACCAGATACCCCTGGTATTTTCAAGCAACA i papAnu2.chr1 M 313 C 0 s chlSab2.chr25 82463972 168 + 85787240 tgttagaagcagaagccctt---gaaggagcacacaga-----------------aGGAGTCTGGGCTGAG-GGCTGTGTGGTGACCTACACCCG-CCCTCCTCCCTACCTCGCAGGAGGAAGTGGGCGCTGAGGA-----AATGGGA--AAAGAGCTGTAAGATTAACCAGATACCCCTGGTATTTTCAAGCAACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14142082 162 - 49578535 TGTCAGAAGCAGAAACACTT---GAAGGAGCTCACAGA-----------------AGGGGTCTTGGCTGAG----CGCGTGGTCCCCTACACC---CCTGTCCCCACACCTCGT-GGAGGAAGTGGGCGCTGTGGA-----AATGGCA--GAAGAGCTGCAAGATTAACCAGATGCCCCTGGTATGTTCAAGCAACA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36311177 170 + 80974532 tatcggaagcaaaagcatgcagaaaggaagcgcacagaaTGCAGGAAGAAGGCTGAGGGCCCTGGACTCAGCACCTGCA-ATTGTACCAAACCTG-CCCTTGGTCAGACCTCACCAGCAGCAGAG------GAGGAGTCCTAATGGGACCAGAAAGCAGCAAGATGAGC-------------------CAAGCAACA i canFam3.chr7 C 0 C 0 e mm10.chr1 178734129 734 + 195471971 I a score=2420308.000000 s hg38.chr1_KI270759v1_alt 138830 719 + 425601 CCATCTGCTGTATTTCCAC-AGAAAGGGTGTTGATTTTCCTGAA--TTCTAG---AGGTGGTGTTT-TCATCACTGAGTTCAGATGCCTTTGATTGATGAGCCACCTTCAAACCAAGTCAGCATGAAACAGAAGCTTGGGTTAGTTCACGTTGTTTGATA----------TAATAGGACAAGGCAGACTAACGTCTCTTGAGAATGAAGGGAAGTTTTTCCTACATAAACTTCCACATTCTC-TCACAAGGTGGGAAAAT-AAAAAGGGAAAATG--AC----GTGAGGGGTTGCCCAAGACAGGGATCCTTCCCATCTGAAACCATGCTGTGACATGAAGTGCCACAGATTCCAAAATCCACGTGTGTCTTTCTTCGAAACCAATAGCCACGTGT-------AAAAAAA---ATTATATAGCGTATAAACCCATAGCAGCAACATTTTAAGTGGAAACAGATTTCTTCCATTTTAAAGAAATGTCAACTGTGTTAGGGAGTCTGGGGATCCCTCGCATACATCCCAGCTGAACATGAACCCCAAATTCCTGTGTAATGTATCGCAGAA------TCTGTCCTTTGCTCACTTCGTATC-TGTCAT--CAATCAACACTGCAGACTCTGGAAG-CAAGCATGT--TATGGTTTTACTCTTGTGACTAAGCGGAGACAAGAAGGCATTTTTCTCCTCCTTGGGCTGTTTGGAAAGCATAGAATGAAATCCAGGGCATGGTCATCATGAATTATAGCGCAGCCAGGCT s panTro4.chr1 224890352 719 + 228333871 CCATCTGCTGTATTTCCAC-AGAAAGGGTGTTGATTTTCCTGAA--TTCTAG---AGGTGGTGTTT-TCATCACTGAGTTCAGATGCCTTTGATTGATGAGCCACCTTCAAACCAAGTCAGCATGAAACAGAAGCTTGGGTTAGTTCACGTTGTTTGGTA----------TAATAGGACAAGGCAGACTAATGTCTCTTGAGAATGAAGGGAAGTTTTTCCTACATAAACTTCCACATTCTC-TCACAAGGTGGGAAAAT-AAAAAGGGAAAATG--AC----GTGAGGGGTTGCCCAAGACAGGGATCCTTCCCATCTGAAACCATGCTGTGACAGGAAGTGCCACAGATTCCAAAATCCACGTGTGTCTTTCTTCAAAACCAATAGCCACGTGT-------AAAAAAA---ATTATATAGCATATAAACCCATAGCAGCAACATTTTAAGTGGAAACAGGTTTCTTCCATTTTAAAGAAATGTCAACTGTGTTAGGGAGTCTGGGGATCCCTCACATATATCCCAGCTGAACATGAACCCCAAATTCCTGAGTAATGTATCGCAGAA------TCTGTCCTTTGCCCACTTCGTATC-TGTCAT--CAATCAACACTGCGGACTCTGGAAG-CAAGCATGT--TATGGTTTTACTCCTGTGACTAAGTGGAGACAAGAAGGCATTTTTCTCCTCCTTGGGCTGTTTGGAAAGCATAGAATGAAATCCAGGGCATGGTCATCATGAATTATAGCGCAGCCAGGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226245857 708 - 229942017 CCATCCGCTATATTTCCAC-AGAAGGGGTGTTGATCTTCCTGAA--TTCTAG---AGGTGGTGTTT-TCATCGCTGAGCTCAGATGC-------------GCCACCTTCAAACCAAGTCGGCATGAAAGAGAAGCTTGGGTTAGTTCACGCTGTTTGATA----------TAATAGGACAAGGCAGACTAATGTCTCTTGAGAACGAAGGGAAGTTTTTCCTAAATGAACTTCCACATTCTC-TCACGAGGTGGGAAAAT-AAAAAGAGAAAATGAAAT----GTGAGGGGTTGCCCAAGACAGGGAGCCTTCCCATCTGAAACCATGCTGTGACGTGAAGTGCCGCAGATTCCAAAATCCACGTGTGTCTTTCTTCGAAACCAACAACCATGTGT-------AAAAAAA---ATTATATAACATATAAACCCATAGCGGCAACATTTGAAGTGGAAACAGATTTCTTCCATTTTAAAGAAATGTCAACTGTGTTAGGGAGTCTGGGGATCCCTCGCATATATCCCAGCTGAACATGAACCCCAAATTCCTGTGTAATTTATTGCAGAA------TTTGTCCTTTGCTCACTTTGTATC-TGTCAT--CAATCAACACTGCGGACTCTGGAAG-CAAGCATGT--TATGGTTTTGCTGTGGTGACTAAGTGGAGACGAGAAGGCATTTTTCTCCTCCTTGGGCTGTTTGGAAAGCATAGAGTGAAATCCAGGGCATGGTCATCATGAATTATAGCGCAGCCAGGCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140137998 721 - 143122389 CCATCCGCTGTATTTCCAC-AGAAAGGGTGTTGATTTTCCTGAA--TTCTAG---AGGTGGTATTT-TCATCACTGAGTTCAGATGCCTTTGATTGGTGAGCCACCTTCAAACCAAGTCAGCATGAAACAGAAGCTTGGGTTAGTTCATGTTGTTTGATA----------TAACAGGGCAAGGCAGACTAACGTCTCTTGAGAATGAAGGGAAGTTTTTCCTAAATAAACTTCCACATTCTC-TCACAAGGTGGGAAAAT-AAAAAGGGAAAATGAAAT----GTGAGGGGTTGCCCAAGACAGGGAGCCTTCCCATCTGAAACCATGCTGTGGCGTGAAGTGCCACAGATTCCAAAATCCACGTGTGTCTTTCTTCGAAACCAATAGCCACGTGT-------AAAAAAA---ATTATATAGCATATAAACCCACAGCAGCAACATTGTAAGTGGAAACAGATTTCTTCCATTTTAAAGAAATGTCAACTGTGTTAGGGAGTCTGGGGATCCCTCGCATATATCCCAGCTGAGCATGAACCCCAAATTCCTGTGTAATTTATAGCAGCA------CTTGTCCTTTGCTCACTTCGTCTC-TGTCGT--CAATCAATACTGCGGACTCTGGAAG-CAAGTATGT--TATGGTTTTACTGTTGTGACTAAGTGGAGACAAGGAGGCATTTTTCTCCTCCTTGGGCTGTTTGGAAAGTACAGAATGAAATCCAAGGCATGGTCATCATGAATTATAGCACAGCCCGGCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16853425 721 - 229590362 CCATCTGCTGTATTTCCAT-AGAAAGGGTGTTGATTTT-CTGAA--TTCTAG---GGGTGGT-TTT-TCATCACTGAGTTCAGATGCCTTTGATTGGTGAGCCACTTTCAAACCAAGTCAGCATGAAACAGAAG-GTGGATTATTTCATGTTGTTTCATA----------TAATAGGACAAGGCAGACTAATGTCTCTTGAGAACGAAGGGAAGTTTTTCCTGAATAAACTTCCACATTCTC-TTACAACGTGGGAAAAT--AAAAGGGAAAATGAAAC----ATGAGGGGTTGCCCAAAACAGGGAGCCTTCCCATCTGAAACCATGCTGTGACGTGAAGTGCCACAGATTCCAAAATCCACGTGTGTCTTTCTTCGAAACCAATAGCTACGTGT--AAAAAAAAAAAA---AGGATATAGCATATGAACCCATAGCAGCAACATTTTAAGTGGAAACAGATTTCTTCCATGTTAAAGAAATGTCAACTGTGTCAGGGAGTCTGGGGGTCCCTCCCATGTATCCCAGCTGAACATGAACCCCAAATTCCTGTGTAATTTATAGCAGAC------TCTGTCCTTTGCTCACTTCGTATC-TGTCAT--CAATCAACGCTGAGGACTCTGGAAG-CAAGCGTGT--TATGGTTTTAGTGTTGTGACTAAGTGGAGACAAGAAGGCATTTTTCTCCTCCTTGGGCTGTTTGGAAAGTCTAGAACGAAATTCAAGGCCT-GTCATCATGAATTACAGCGCAGCCAGGCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223614072 723 - 227556264 CCATCTGCTGTATTTCCAT-AGAAAGGGTGTTGATTTT-CTGAA--TTCTAG---GGGTGGT-TTT-TCATCACTGAGTTCAGATGCCTTTGATTGGTGAGCCACTTTCAAACCAAGTCAGCATGAAACAGAAG-GTGGATTATTTCATGTTGTTTCATA----------TAATAGGACAAGGCAGACTAATGTCTCTTGAGAACGAAGGGAAGTTTTTCCTGAATAAACTTCCACATTCTC-TTACAACGTGGGAAAAT--AAAAGGGAAAATGAAAC----ATGAGGGGTTGCCCAAAACAGGGAGCCTTCCCATCTGAAACCATGCTGTGACGTGAAGTGCCACAGATTCCAAAATCCACGTGTGTCTTTCTTCGAAACCAATAGCTACGTGTAAAAAAAAAAAAAA---AGGATATAGCATATGAACCCATAGCAGCAACATTTTAAGTGGAAACAGATTTCTTCCATGTTAAAGAAATGTCAACTGTGTCAGGGAGTCTGGGGGTCCCTCCCATGTATCCCAGCTGAACATGAACCCCAAATTCCTGTGTAATTTATAGCAGAC------TCTGTCCTTTGCTCACTTCGTATC-TGTCAT--CAATCAACGCTGAGGACTCTGGAAG-CAAGCGTGT--TATGGTTTTAGTGTTGTGACTAAGTGGAGACAAGAAGGCATTTTTCTCCTCCTTGGGCTGTTTGGAAAGTCTAGAACGAAATCCAAGGCCT-GTCATCATGAATTACAGCGCAGCCAGGCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16665034 727 - 220367699 CAATCTGCTGTATTTCCAT-AGAAAGGGTGTTGATTTT-CTGAA--TACTAG---GGGTGGTGTTT-TCATCACTGAGTTCAGATGCCTTTGATTGGTGAGCCACTTTCAAACCAAGTCAGCATGAAACAGAAG-GTGAATTATTTCATATTGTTTCATG----------TAATAGGACAAGGCAGACTAATGTCTCTTGAGAACGAAGGGAAGTTTTTCCTGAATAAACTTCCACATTCTC-TTACAATGTgggaaaat--aaaagggaaaatgaaac----GTGAGGGGTTGCCCAAGACAGGGAGCCTTCCCATCTGAAACCATGCTGTGACGTGAAGTGCCACAGATTCCAAAATCCACGTGTGTCTTTCTTCGAAACCAATAGCTacgtgtaaaaaaaaaaaaaaaacaggatatagCATATGAACCCATAGCAGCAACATTTTAAGTGGAAACAGATTTCTTCCATGTTAAAGAAATGTCAGCTGTGTCAGGGAGTCTGGGGGTCCCTCCCATGTATCCTAGCTGAACATGAACCCCAAATTCTTGTGTAATTTATAGCAGAC------TCTGTCCTTTGCTCACTTCGTATC-TGTCAT--CAGTCAGCGCTGAGGACTCTGGAAG-CAAGCGTGT--TATGATTTTAGTGTTGTGACTAAGTGGAGACAAGAAGGCATTTTTCTCCTCCTTGGGCTGTTTGGAAAGTCTAGAACGAAATCCAAGGCCT-GTCATCATGAATTACAGcgcagccaggct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82464140 724 + 85787240 CCATCTGCTGTATTTCCAT-AGAAAGGGTGTTGATTTT-CTGAA--TTCTAG---GGGTGGTGTTT-TCATCACTGAGTTCAGATGCCTTTGATTGGTGAGCCACTTTCAAACCAAGTCAGCATGAAACAGAAG-GTGGATTATTTCATGTTGTTTCATA----------TAATAGGACAAGGCAGACTAATGTCTCTTGAGAATGAAGGGAAGTTTTTCCTGAATAAACTTCCACATTCTC-TTACAATGTGGGAAAAT--AAAAGGGAAAATGAAAC----GTGAGGGGTTGCCCAAGACAGGGAGCCTTCCCATCTGAAACCATGCTGTGACGTGAAGTGCCACAGATTCCAAAATCCACGTGTGTCTTTCTTCGAAACCAATAGCTACGTGTAAAAAAAAAAAAAA---AGTATATAGCATATGAACCCATAGCAGCAACATTTTAAGTGGAAACAGATTTCTTCCATGTTAAAGAAATGTCAACTGTGTCAGGGAGTCTGGGGGTCCCTCCCATGTATCCTAGCTGAACATGAACCCCAAATTCCTGTGTAATTTATAGCAGAC------TCTGTCCTTTGCTCACTTTGTATC-TGTCAT--CAATCAATGCTGAGGACTCTGGAAG-CAAGTGTGT--TATGGTTTTAGTGTTGTGACTAAGTGGAGACAAGAAGGCATTTTTCTCCTCCTTGGGCTGTTTGGAAAGTCTAGAATGAAATCCAAGGCAT-GTCATCATGAATTACAGCGTAGCCAGGCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14142244 720 - 49578535 CCATCCGCTGTATTTCCAC-AGAAAGGGTGTTGATTTTCCTGAA--TTCTAG---GGGTGGTGTTT-TCATCACTGAGTTCAGATGCCTTTGATGGGTGAGCCGCCTTCGAACCAAGTCAGCATGAAACAGAAGGCTGGGTTATTTCATGTTGTTTGATG----------TAATAGCACAAGGTAGACGAATGTCTCTTGAGAATGAAGGGAAGTTGTTCCTAAGGAAATGTTCACGTTCTC-TTACAAGGTGGGAACAT-GAGAAGGGAAGATGAAAC----GTGGAGGGCTGCCCA--GCAGGAAGCCCCCGCATCTGAGACCCTGCTTCGACTTGAAGCGCCATGGATTCCAAAATCCCTCTGGGTC-TTCTTCAAAACCAATAGCCACATGT-AAAAAAAAAAAAT---ACCATATA-CATGTGAACCCATAGCAGCAACATTTTAAGTGGAAACAGGTTTCTTCCATTGTAAAGCAATATGAACTCTGTTAGGGAGTCTAGGGGTCCC-CCCATGTCTCCCAGCTGAACATGAACTCCACGTTCCTGTGTAATTTACAGCAGAA------TCTGTCCTTTGCTCACGTC-TATC-TGTCAT--CAGCCAGCACTGCGTACTCTGGAAG-CTAGCATGG--TGTGGTTTCAGTGTTGTGACCAAGTGGAGACAAGAAGGCATGTTTCTCCTCTTTGGGCTGTTTGGAAAGTACAGA-CAGAATCCAAGGCATGGTCACCATGAATTCCAGCACAGCTACGCT i calJac3.chr19 C 0 I 313 s mm10.chr1 178734863 640 + 195471971 CCAACTCACGTGTATCCAC-AGAAAGAGTGCTGGTCTTCCTGGA--TTCGAATCCAGGAAGT--------CAGCCAAGTGCAGGTATCT-------------CAGTTTCAAGCCAGGTCACTGTGCAGTAGTTCATCAGGTTACTTCAGGTTACTTTATGTCATAAGGTCTAACAGTATAATGCCGACTTCCACTTCTTGAGAATCAAAGGAAGTTATCTCTAGGCAAAGTTCCAGGTTTTTGTTACAAAGTGGAAAACCAAAAAAGGGAAAATGAAAA----GTGAGGGATCGCCCAGGATAGGG--CTCTCCTATCTGAACCCTTGCTGTGTGGTGAAGCAACGCAGCTTCCAGAATTCACACACACCTCTCTCCAAAGCCAATAGCAGCATGC--------AGCAGA---ATCCTAGAGCATGTGAATCCACAGAAACCA---------------------TCTCTCCTGTTTAAACAGTGTCGACTTTATTATGGGGCATGGG---------------TCCTAGCAGGATACAAGCACCACACTCCTATGTAATTTGCAGCAGAA-CATGGCCTGTCCTTGGTTTATTGCATATTATCTTGT--CCCTCAACATGCAGGGCCCTAGAAC-CAAGCATGTGATATGGTTTTAATGCTGTGGCTTAGCAGAGGCAAGGACAGATATTTGT-TTCCTTGAGCTGGT-----------GGATGGAGTGTGGGG--------------------------------- i mm10.chr1 I 734 C 0 s canFam3.chr7 36311347 678 + 80974532 CTAGCAGCTGTGTAGCCACAAAAAAGGGCGTCAATTTTCCCGAATTTTCTGG---GGGTGCTGTTTCTCATCACCAAATTCAGGTGTCT-----------------TTCAATCCCAGTCAGTA-GGAATAGGACATTGGGTTTTTTCATGTTGGATGACA----------TGATGGGATCAGGCTGACGGATGTCCCTTGGGAGTGAAGGGAAGTTGCTTC-AAGTGTACATCCACATTCTC-TCTCAAGGTGGGAAAAC-AGGAAGGGAAAATGAGAAGGGGGTGGGGAGTTGCCCAAGACAGGGAGCCTCCCTGTCAGAATCCATGCTGTGACTCGAAGGGACGCAGGTTCCAAAACCTGTGTGTGTCTCCCTTCAAAACCAATGACTGAGTA--------AAAAGTA---ATTCTATAGTATGTGAACCCATAGCAACAGTATTTTAAGGGAAAACAGA----TTCTATCATAAAAAAATGTCAGCT------------------------CTCACGCATCCCAGCTGAACACCAAGACCAAATTCTAGTGTGATTTATAGGAGAATCTCGTTCTGTCCTTAGCTCACTTCGTATG-TGTCACAGCTATCAACATGGAGGACTCTGGATGCCAAGGACAT--TATGATTTTAATTTTGTGACTGAGTGA------------ATATTCCTCCTCCTGGGGCTGTTGGAGGCATTCAGAGTGAAATCCAGTGGGTGGGAATCAGGTATTTCAGGGAAACTGTGCT i canFam3.chr7 C 0 C 0 a score=2720.000000 s hg38.chr1_KI270759v1_alt 139549 2 + 425601 -GG s panTro4.chr1 224891071 2 + 228333871 -GG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226246565 2 - 229942017 -GG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140138719 2 - 143122389 -GG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16854146 2 - 229590362 -GG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223614795 2 - 227556264 -GG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16665761 2 - 220367699 -gg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82464864 2 + 85787240 -GG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36312025 2 + 80974532 TG- i canFam3.chr7 C 0 C 0 e mm10.chr1 178735503 0 + 195471971 C e calJac3.chr19 14142964 313 - 49578535 I a score=9666.000000 s hg38.chr1_KI270759v1_alt 139551 3 + 425601 TCT s panTro4.chr1 224891073 3 + 228333871 TCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226246567 3 - 229942017 TCT i ponAbe2.chr1 C 0 I 2 s nomLeu3.chr5 140138721 3 - 143122389 TCT i nomLeu3.chr5 C 0 I 323 s rheMac3.chr1 16854148 3 - 229590362 TCT i rheMac3.chr1 C 0 I 2 s macFas5.chr1 223614797 3 - 227556264 TCT i macFas5.chr1 C 0 I 2 s papAnu2.chr1 16665763 3 - 220367699 tct i papAnu2.chr1 C 0 I 2 s chlSab2.chr25 82464866 3 + 85787240 TCT i chlSab2.chr25 C 0 I 2 s calJac3.chr19 14143277 3 - 49578535 TCA i calJac3.chr19 I 313 C 0 s canFam3.chr7 36312027 3 + 80974532 CCT i canFam3.chr7 C 0 I 2 e mm10.chr1 178735503 0 + 195471971 C a score=736016.000000 s hg38.chr1_KI270759v1_alt 139554 220 + 425601 AGAATCTCTCATCTTCCAGGCAACCCCAGCCTTGGCAGCACCATCAAAGGGTCATGGATAACAATTTTAAAATGCAGTGAATG--A---AAGTGTTCATatgatgctaatggaatcataa----tttttaaagtgtcctcatcctttagagatatagac-taaaatactggcagatgaaatgctatgattatgggacttttgtcacagtaata-c---tacagagagaagtgcg s panTro4.chr1 224891076 220 + 228333871 AGAATCTCTCATCTTCCAGGCAACCCCAGCCTTGGCAGCACCATCAAAGGGTCATGGATAACAATTTTAAAATGCAATGAATG--A---AAATGTTCATatgatgctaatggaatcataa----tttttgaagtgtcctcatcctttagagatatagac-taaagtactggcagatgaaatgctatgattatgggacttttgtcacagtaata-c---tacagagagaagtgcg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226246572 218 - 229942017 GGAATCTCTCATCTTCCAGGCAACCCCAGCCTTGG-AGCACCATCAAAGGGTCATGGATAACAATTTTAAAATGCAATGAATG--A---AAATGTTCATATGAtgataatggaatcataa----tttttaaagtttcc-catcctttagagatatagac-taaaatactggcagatgaaatgctatgattatgggatttttgtcacagtaata-c---tacagagagaagtgcg i ponAbe2.chr1 I 2 C 0 s nomLeu3.chr5 140139047 221 - 143122389 GGAATCCCTCATCCTCCAGGCAACCCCAGCCTTGGCAGCACCATCAAAGGGTCATGGATAACAATTTTAAAATGCAATGAATG--A---AAATGTTCATatgatgataatggaatcataa----cttttaaagtgtcctcatcctttagagatatagacttaaaatactggcagatgaaatgctatgattatgggatttttgtcacagtaata-c---tacagagagaagtgtg i nomLeu3.chr5 I 323 C 0 s rheMac3.chr1 16854153 220 - 229590362 GGCATTCCTCATCTTCCAGGCAGCCCCAGCCTGGGCAGCACCATTAAAGGGTCATGGGTAACAATTTTAAAAGGCAATGAATG--A---AAATGTTCATatgatgataatggaataataa----tttttaaagtgtcttcatcctttagtgatatagac-taaaatactggcagatgaaatgctttgattatgggatttttttcacagtaata-c---tacagagagaagtgcg i rheMac3.chr1 I 2 C 0 s macFas5.chr1 223614802 220 - 227556264 GGCATTCCTCGTCTTCCAGGCAGCCCCAGCCTGGGCAGCACCATTAAAGGGTCATGGGTAACAATTTTAAAAGGCAATGAATG--A---AAATGTTCATatgatgataatggaataataa----tttttaaagtgtcttcatcctttagtgatatagac-taaaatactggcagatgaaatgctttgattatgggatttttttcacagtaata-c---tacagagagaagtgcg i macFas5.chr1 I 2 C 0 s papAnu2.chr1 16665768 220 - 220367699 ggaaTCCCTCGTCTTCCAGgcaaccccagcctgggcagcaccaTTAAAGGGTCATGGGtaacaattttaaaaggcaatgaaTG--A---AAATGTTCATATGATGATAATggaatcataa----tttttaaagtgtcttcATCCTTTAGTGATACAGAC-TAAAATACTGGCAGATGAAATGCTTTGATTATGGGAtttttttCACAGTAATA-C---TACAGAGAgaagtgcg i papAnu2.chr1 I 2 C 0 s chlSab2.chr25 82464871 220 + 85787240 GGAATCCCTCGTCTTCCAGGCAGCCCCAGCCTGGGCAGCACCATTAAAGGGTCATGGGTAACAATTTTAAAAGGCAATGAATG--A---AAATGTTCATatgatgataatggaatcataa----tttttaaagtgtcctcatcctttagtgatatagac-taaaatactggcagatgaaatgctttgattatgggattcttttcacagtaata-c---tacagagagaagtgCA i chlSab2.chr25 I 2 C 0 s calJac3.chr19 14143280 215 - 49578535 GGAAACCCTGGTCTTCCAGGCACCCTAAGCCTGCGCAGCACCATCAAAGGGGCATAGATAACCA-TTGAGAAGGCAATGAATA--A---AAATGTTCATATGgtgatcatggaatcataa----gttttcaagtgtcctcatcctttagagatatagac-taaagtattgacagatgaaatgctgtgattatgggatttttgtgacaataatA--------ATAGAGAAGTGCG i calJac3.chr19 C 0 I 933 s mm10.chr1 178735503 203 + 195471971 ---------TGTCTTCCA-GCATCCTCAGCCTGGACACTACAATAGAGGAAGCCTTCATAATAAATTAAAAAGGTATAAAATATTA---AGATGTTTCT-TAATAACAATGGAGTTTCGT----CTTCTTAAGTGTTCCTGTCCTGTAGAGTTTGGTAC-TAAAGTCCTGGCAGATTTAAAGCTATGATAGTGAGAATTGCTTCACAGTAATGGC---AACAGAA--------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36312032 220 + 80974532 CGAAACCCTGGTCTTCCAGGGAAGCCGAGCCCACGAAGCACCACCAAAGCGGCATAGGTGACAATTTAAGAAGGCAATGAATT--AATCATCTttttttatgatgataatagaattaccatatgttttgcatgtatccttatcccttagagatatctgc-tgagatattgac-------atgttatgatgatggtattatcttcacagtaata-tagaagaagagagaagt--- i canFam3.chr7 I 2 C 0 a score=23942.000000 s hg38.chr1_KI270759v1_alt 139774 11 + 425601 tgCGTGCGCGT s panTro4.chr1 224891296 11 + 228333871 tgcgtgcgtgt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226246790 11 - 229942017 tgcgtgcgtgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140139268 11 - 143122389 tgtgtgtgtgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16854373 11 - 229590362 tgtgtgtgcgt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615022 11 - 227556264 tgTGTGTGCGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16665988 11 - 220367699 tgtgtgtgcgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465091 11 + 85787240 tgtgtgtgcgt i chlSab2.chr25 C 0 C 0 e mm10.chr1 178735706 0 + 195471971 C e canFam3.chr7 36312252 0 + 80974532 C e calJac3.chr19 14143495 933 - 49578535 I a score=870295.000000 s hg38.chr1_KI270759v1_alt 139785 275 + 425601 GTGTATGTGTGTGTATGCATGCATGTGCGCACgtgggggggatacacatggaataagattggttatggattggcaattgttgaagctgagtgacagacacataggctattc----tatttttgtatatgtttaaatttttccataataataggtcaaaTAGATCATAAGCATAGTGTATACTCACAGATCCCTCCAGAAGA--ATCT--AAATGCCCAGCTACGCTGGTCACCGAGTATCCGCCTTGCTCTCCCAGGTGT-----CCATAA-GCCCCTGCCACAGGGCT s panTro4.chr1 224891307 269 + 228333871 gtgt------gtgtatgcacgcatgtgcgcacgtgagggggatacacatggaataagattggttatggattggtaattattgaagctgagtgacagacacataggctattc----tatttttgtatatgtttaaatttttccataataataggtaaaaTAGATCATAAGCATAGTGTATACTCACAGATCCCTCCAGAAGA--ATCT--AAATGCCCAGCTACGCTGGTCACCGAGTATCCGCCTTGCTCTCCCAGGTAT-----CCATAA-GCCCCTGCCACAGGGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226246801 271 - 229942017 gtgt----gtgtgtgtgcacgcacgtgcacacgtgagggggatacacatggaataagattggttatggattgataattgttgaagctggatgacagacacataggctattc----tatttttgtatatgtttaaatttttccataataataggtaaaatagaTCATAAGCATAGTTTATACTCACAGATCCCTCCAGAAGA--ATCT--AAATGCCCAGCTACGCTGGTCACCGAGTATCCGCCTTGCTCTCCCAGGTGT-----CCATAA-GCCCCTGCCACAGGGCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140139279 275 - 143122389 gtgtgtgtgtgtgtatgcatgcacgtgcgcacatgagggggatacacatggaataagattggttatggattgataattgttgaagctgggtgacagccacataggctattc----tatttttgtatatgtttaaatttttccataaaaataggtaaaGTAGATCATAAACATAGTTTATACTCACAGATCCCTCCAGAAGA--ATCT--AAATACCCAGCTAGGCTGGTCACCGAGTGTCCGCCTTGCTCTCCCAGGTGT-----CCATAA-GCCCCTGCCACAGGGCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16854384 276 - 229590362 ggatgcgtgtgtgtatgcatgcatgtgtgcacgtgacgggggtacacatggaataagacttgttatgaattgatgactgttgaagctgggtgacagccacacaggctattc----tatttttgtatatgtttaaatttttccataataataggtaaaaTAGATCATAAACATAGTTTATACTCACAGATCCCTCCAGAAGA--ATCT--AAACGCCCGGCCAGGCTGGTCACCGAGTATCCACCTCACTCTCCCAGGTGT-----CCATAAGGCCTCTGCCACAGGGAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615033 276 - 227556264 GGATGCGTGTGTGTATGCGTGCATGTGTGCACATGAAgggggtacacatggaataagacttgttatggattgatgactgttgaagctgggtgacagccacacaggctattc----tatttttgtatatgtttaaatttttccataataataggtaaaaTAGATCATAAACATAGTTTATACTCACAGATCCCTCCAGAAGA--ATCT--AAACGCCCGGCCAGGCTGGTCACCGAGTATCCACCTCACTCTCCCAGGTGT-----CCATAAGGCCTCTGCCACAGGGAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16665999 276 - 220367699 ggatgcgtgtgtgtatgcatgcatgtgtacacGTGAAGGGGGTACACATGGAATAAGATTTGTTATGGATTGATGACTGTTGAAGCTGGGTGACAGCCACACAGGCTattc----tatttttgtatatgtttaaatttttccataataATAGGTAAAATAGATCATAAACATAGTTTATACTCACAGATCCCTCCAGAAGA--ATCT--AAACGCCCGGCCAGGCTGGTCACCGAGTATCCACCTCGCTCTCCCAGGTGT-----CCATAAGGCCTCTGCCACAGGGAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465102 276 + 85787240 ggatgtgtgtgtgtatgcatgcatgtgtgCACGTGAAgggggtacacatggaataagatttgttatggattgatgactgttgaagctgggtgacagccacacaggctattc----tatttttgtatatgtttaaatttttccataataaTGGGTAAAATAGATCATAAACATAGTTTATACTCACAGATCCCTCCAGAAAA--ATCT--AAACGCCCGGCCAGGCTGGTCACCGAGTATCCACGTCGCTCTCCCAGGTGT-----CCATAAGGCCTCTGCCACAGGGAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14144428 269 - 49578535 GCGTGTGTGTGTGTACTCACACCTGTGCACACGTTC--gaggtacacgtggaataagattggttatggattgataattgttgaagcagggcaacagctacataggctattc----tatttttgcatatgtttaaatttttcCGTAATAATAGGTAAAACAGATCATAAACATAGTTTTTACTCACAGATCCCTCCAGAAGA--ATCT--AAAAGCCCAGCCAGGCTGGTCACCGAGTATCCGCCAAGCTCTCCCAGGTGT-----CCACAAGGCCCCTGCTGCA----- i calJac3.chr19 I 933 C 0 s mm10.chr1 178735706 249 + 195471971 ------------------------GTGGGAGGAACAGAGAAGAACAGATG----CAGAGCTGCCACGGGCCAGTGACT-CTGACACTGAGGCGCACCTAGAGAGACTCTTC---ATTTTTCAATGCGTATTTGGAATTTTCCATAGTAGCAAGTAAAATAGATCATAAGCCTAGTTTGCTCTCAGAGATTCCTTCAGAAGACTGTCT--GGAGGTCTTGCC-CACTGGTCCCTGACTGTCCTTCATGTTTTGTCTGGTTC-----CTAAAATATTTCTGCCACAGAGCT i mm10.chr1 C 0 I 415 s canFam3.chr7 36312252 240 + 80974532 ------------------------------------gggggttacacatggaacaa-atgggctatgacttgatccttgctcaacccagggcataagtacctagactcttccatccatttccttatatgtgtgattttttccataat---------aaaaGTTCGTGAAACTCATTTATACATAAAGATGCCTTCAGCAGA--CTCTCCGAAAGCCCAGCCCTGCTGATCGGGGAGGATCCCTCACGTTCTCTCTGACGTGACGACCATGA-AACCCTGCCAGAGGACT i canFam3.chr7 C 0 C 0 a score=45932.000000 s hg38.chr1_KI270759v1_alt 140060 12 + 425601 GGTGAGGAAGCC s panTro4.chr1 224891576 12 + 228333871 GGTGAGGAAGCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226247072 12 - 229942017 GGTGAGGAAGCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140139554 12 - 143122389 GGTGAGGAAGCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16854660 12 - 229590362 GGTGAGGAAGCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615309 12 - 227556264 GGTGAGGAAGCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16666275 12 - 220367699 GGTGAGGAAGCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465378 12 + 85787240 GGTGAGGAAGCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14144697 12 - 49578535 GGTGAGGATGCC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36312492 12 + 80974532 GGTGGGGATGAC i canFam3.chr7 C 0 C 0 e mm10.chr1 178735955 415 + 195471971 I a score=473169.000000 s hg38.chr1_KI270759v1_alt 140072 135 + 425601 TGGC-TCCCAGCTT-GTGGCTACCTTTACACCCATCACTCTGCTCTCCTCCCAGAACTCCATTCCTCCAGTCACAGGGCCCCC----------------AGCATAACAATTCCATTAGCATCCTTCCCTCCCTTATTTCTTGCAAAA-TTACTC s panTro4.chr1 224891588 135 + 228333871 TGGC-TCCCAGCCT-GTGGCTACCTTTACACCCATCACTCTGCTCTCCTCCCAGAACTCCATTCCTCCAGTCACAGGGCCCCC----------------AGCATAACAATTCCATTAGCATCCTTCCCTCCCTTATTTCTTGCAAAA-TTACTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226247084 135 - 229942017 TGGC-TCCCAGCCT-GTGGCTACCTTTACACCCATCACTCTGCTCTCCTCCCAGAACCCCATTCCTCCAGTCACAGGGCCCCC----------------AGCATAACAATTCCATTAGCATCCTTCCCTCCCTTATTTCTTGCAAAA-TTACTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140139566 135 - 143122389 TGGC-TCCCAGCCT-GTGGCTACCTTTACACCCATCACTCTGCTCTCCTCCCAGAACCCCATTCCTCCAGTCACAGGGCCCCC----------------AGCATAACAATTCCATTAGCATCCTTCCCTCCCTTATTTCTTGCAAAA-TTACTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16854672 134 - 229590362 TGGC-TACCAGCCT-GTGGCTGCCTTTACACCTATCACTCTGCTCTCCTCCCAGAACCCCATTCCTCCAGTCACA-GGCCCCC----------------AGCATAACAATTCCATTCATGTCCTTCCCTCCCTTGTTTCTTGCAGAA-TTACTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615321 134 - 227556264 TGGC-TACCAGCCT-GTGGCTGCCTTTACACCTATCACTCTGCTCTCCTCCCAGGACCCCATTCCTCCAGTCACA-GGCCCCC----------------AGCATAACAATTCCATTCATGTCCTTCCCTCCCTTGTTTCTTGCAGAA-TTACTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16666287 134 - 220367699 TGGC-TACCAGCCT-GTGGCTACCTTTACACCTATCACTCTGCTCTCCTCCCAGAACCCCATTCCTCCAGTCACA-GGCCCCC----------------AGCATAACAATTCCATTCATGTCCTTCCCTCCCTTGTTTCTTGCAGAA-TTACTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465390 134 + 85787240 TGGC-TACCAGCCT-GTGGCTACCTTTACAGCCATCACTCTGCTCTCCTCCGAGAACCCCATTCCTCCAGTCACA-GGCCCCC----------------AGCATAACAATTCCATTCATGTCCTTCCCTCCCTTGTTTCTTGCAGAA-TTACTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14144709 132 - 49578535 TGGC-TCCCAGCTT-TTGGTTGCCTTTACACCCACCACTCTGCTGTCCTCCGAGAACCCCATTCCTCCAGTCACA-GG-CCCC----------------AGCATAACAATTCCA-CGATGGGCCTCCCTCCCTTATTTCTTGCAGAA-TTACTC i calJac3.chr19 C 0 I 293 s mm10.chr1 178736370 147 + 195471971 TGAC-TCCCAGCCT-GTGGCCCCCACCTCTGCTGTTACTCTACTATCATCCCAGAACCCCACTCTTCCAGTCTTAAAGCTCCCCAATTTACAACCGAAGAGCGTTGTAATCCCATTAGG----CTTCCTCCCATACTTCTTGCAAAA-TTACTT i mm10.chr1 I 415 C 0 s canFam3.chr7 36312504 129 + 80974532 TGACTTCCCAGCCTAGTGGCTTCCA-TGCTGCCACCA--CCGCTCATCTCCCAGAGCCT--GTGCCCCAGTCCCTGGGCCTCC----------------AGCACTACTGTTCCATTAGG----CCTCCTCCCTGATATCTCACAAAATTTACTC i canFam3.chr7 C 0 C 0 a score=261623.000000 s hg38.chr1_KI270759v1_alt 140207 78 + 425601 TTATCATGAATTCCAGGGACTGTGTTCATTTGAGT--GGCATCA-TCTA--TTACTATTTCATTTACCC-CATCACATTTC-TTT s panTro4.chr1 224891723 80 + 228333871 TTACCATGAATTCCAGGGACTGTGTTCATTTGAGT--GGCATCA-TCTAAATTACTATTTCATTTACCC-CATCACATTTC-TTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226247219 79 - 229942017 TTAACAGGAATTCCAGGGACTGTGTTCATTTGAGT--GGCATCA-TCTA--TTACTATTTCATTTACCC-CATCGCATTTCTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140139701 78 - 143122389 TTAACATGAATTCCAGGGACTGTGTTCATTTGAGT--GGCATCA-TCTA--TGACTATTTCATTTACCC-CATCACATTTC-TTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16854806 78 - 229590362 TTAACATAAATTCCAGGGACTGTGTTCATATGAGT--GGCATCA-TCTA--TTACTATTCCATTTACCC-CAACACATTTC-TTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615455 78 - 227556264 TTAACATAAATTCCAGGGACTGTGTTCATATGAGT--GGCATCA-TCTA--TTACTATTCCATTTACCC-CAACACATTTC-TTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16666421 78 - 220367699 TTAACATAAATTCCAGGGACTGTGTTCATATGAGT--GGCATCA-TCTA--TTACTATTCCATTTACcc-caacacatttc-ttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465524 78 + 85787240 TTAACATAAATTCCAGGGACTGTGTTCATTTGAGT--GGCATCA-TCTA--TTACTATTTCATTTACCC-CAGCACATTTC-TTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14145134 77 - 49578535 TTAACATGAATTCCAGGGGCTGTGTTCATTTGAGT--GGCATCA-TCTA--TTACTATTTCATTTACCT-CATCACATTT--TTT i calJac3.chr19 I 293 C 0 s mm10.chr1 178736517 74 + 195471971 GTGATATG------AGAGACAGGGTTCCTTTGAGCAGGACAGCA-TTTA--TTTCTATTGCCCCGACCT-CATCACGCCGC-CTT i mm10.chr1 C 0 I 15 s canFam3.chr7 36312633 80 + 80974532 TTGACTTGAGTTCTGGAGACTGAGCTACTTGGAGC--AACATGGCCCTA--TTATGGTTTCATTTCCCCTCATCCTGTTCC-CTT i canFam3.chr7 C 0 C 0 a score=49789.000000 s hg38.chr1_KI270759v1_alt 140285 13 + 425601 TTCTCACATAAAG s panTro4.chr1 224891803 13 + 228333871 TTCTCACATAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226247298 13 - 229942017 TTCTCACATAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140139779 13 - 143122389 TTCTCACATAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16854884 13 - 229590362 TTCTCACATAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615533 13 - 227556264 TTCTCACATAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16666499 13 - 220367699 ttctcacataaag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465602 13 + 85787240 TTCTCACATAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14145211 13 - 49578535 TTCTCACATGAAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36312713 13 + 80974532 TCCTCAGATGAAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178736591 15 + 195471971 I a score=135826.000000 s hg38.chr1_KI270759v1_alt 140298 48 + 425601 ATAcagtcatttgtcacttaataacatacacgttctgagagaggcatt s panTro4.chr1 224891816 48 + 228333871 ATAcagtcatttgtcacttaataacatacacgttctgagagaggcatt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226247311 48 - 229942017 ATAcagtcatgtgtcacttaataacatacacgttctgagaaaggcatt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140139792 48 - 143122389 ATACAGTCATGTGTTACTTAATAACATACACGTTCTGAGAAAGGCATT i nomLeu3.chr5 C 0 M 100 s rheMac3.chr1 16854897 48 - 229590362 ATAcagtcatgtgtcacttaataacatacaggttctgagaaatgcatg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615546 48 - 227556264 ATAcagtcatgtgtcacttaataacatacaggttctgagaaatgcatg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16666512 48 - 220367699 atacagtcatgtgtcacttaataaCATAcaggttctgagaaatgcatg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465615 48 + 85787240 ATAGagtcatgtatcacttaataacacacaggttctgagaaatgcatg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14145224 48 - 49578535 ATATagtcatgcgtcacttagtaacatatacgttctgagaaacgcatt i calJac3.chr19 C 0 C 0 e mm10.chr1 178736591 15 + 195471971 I e canFam3.chr7 36312726 0 + 80974532 C a score=110412.000000 s hg38.chr1_KI270759v1_alt 140346 53 + 425601 gttaggtgattctgtcattgtgcgaacatcatagagtgcacttaacataagcc s panTro4.chr1 224891864 53 + 228333871 gttaggtgattctgtcattgtgcgaacatcatagagtgtacttaatataagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226247359 53 - 229942017 gttaggtgattctgtcattgtgcgaacatcatagagtgtacttaacataagcc i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16854945 53 - 229590362 gttaggtgattttgtcattatgtgaacttcatggaatgttcttaacgtaaacc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615594 53 - 227556264 gttaggtgattttgtcattatgtgaacttcatggaatgttcttaacgtaaacc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16666560 53 - 220367699 gttaggtgattttgtcattatgTGAACTTCATGGAATGTTCTTAACgtaaacc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465663 53 + 85787240 gttaggtgattttgtccttatgtgaacttcatggaatgtacttcacgtaaacc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14145272 53 - 49578535 gttaggtgatttcgtcattgtgcgtacatcagagaatgcacttaacataaacc i calJac3.chr19 C 0 C 0 e mm10.chr1 178736591 15 + 195471971 I e canFam3.chr7 36312726 0 + 80974532 C e nomLeu3.chr5 140139840 100 - 143122389 M a score=683485.000000 s hg38.chr1_KI270759v1_alt 140399 246 + 425601 taaatggtgtagcctactgcacacctcagctatatgatgtagcgtattcattctaggctataaacagtatagcatgttactgtactgagcgctttaggcagttgtaagacagtgctaagtatttgcatatctgaacatatatgaacataaagaaggtatagcaaagatacagtgttatcatcttg-gggactacagttgtgcatgtggtctgtcattgaccaaaacgttgttctgtgacgcatggcC s panTro4.chr1 224891917 246 + 228333871 taaatggtgtagcctactgcacacctcagctatatgatgtagtgtattcattctaggctataaacagtatagcatgttactgtactgagcgctttaggcagttgtaatacagtgctaagtatttgcatatctaaacatatatgaacataaagaaggtatagcaaagatacagtgttatcatcttg-gggactacagttgtgcatgtggtctgtcattgaccaaaacgttgttctgtgacgcatggcC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226247412 246 - 229942017 taaatggtgtagcctactgcacacctgagctatataatgtagtgtattcattctaggctataaacagtatagcatgttactgtactgagcgctttaggcagttgtaagacagtgctaagtatttgcatatctaaacatatatgaacataaagaaggtatagcaaagatacagtgttatcatcttg-gggactacagttgtgcatgtggtctgtcattgaccaaaacgttgttctgtgacgcatggcC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140139942 243 - 143122389 taaatggtgtagcctactgcacacctcagctatatgatgtggcctattcgttctaggctatgaacagtatagcatgttactgtactgagtgctataggcagttgtaggacagtgctaagtatttgcatatctaaacatatatgaacataaagaaggtatagcaaagatacagtgtt---atctta-gggactacagttgtgcatgtgatctgttgttgaccaaaacgttgttatgtgacgcatggcC i nomLeu3.chr5 M 100 C 0 s rheMac3.chr1 16854998 246 - 229590362 tagatggtgtagcctactacacacctcagctatagggtgtagcctattgcttct-ggctacaaacagtatagcatgttactgtactgagtgctctaggcggttgtaagacagtgctaagtatttgcatatccgaacatatatgaacatagagaaggtatagcaaagatacagtgttatcaccttgtgggactacagttgcgcatatagtttgtcattgaccaaaacgttgttctgtgatggatgact i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615647 246 - 227556264 tagatggtgtagcctactacacacctcagctatagggtgtagcctattgcttct-ggctacaaacagtatagcatgttactgtactgagtgctctaggcggttgtaagacagtgctaagtatttgcatatccgaacatatatgaacatagagaaggtatagcaaagatacagtgttatcaccttgtgggactacagttgcgcatatagtttgtcattgaccaaaacgttgttctgtgatggatgact i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16666613 246 - 220367699 tagatggtgtagcctattaCACACCTCGGCCATAGGGTGTAGCCTATTGCTTCT-GGCTACAAAcagtatagcatgttactgtactgagtgCTCTAGGCGGTTGTAAGACAGTGCTAAGTATTTGCATATCCGAACATATATGAACATAGAGAAGGTATAGCAAAGATACAGTGTTATCACCTTGTGGGACTACAGTTGCGCATATGGTTTGCCATTGACCAAAACGTTGTTCTGTGATGGATGACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465716 246 + 85787240 tagatggggtagcctattacacacctcggccatagggtgtagcctattgcttct-ggctacaaacagtatagcatgttactgtactgagtgctctaggcggttgtaagatagtgctaagtatttgcatatctgaacatatatgaacatagagaaggtatagcaaagatacagtgttatcaccttgtgggagtacagttgtgcatatggtttgtcattgaccaaaacgttgttctgtgatggatgact i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14145325 241 - 49578535 tagatggtgtagcctactatgcgtctcggctatagggtatagcctgttgcttctaggct----acagtatagcatgttactgtaccgagtgctctaggcagttgtaagacagtgctaagtatttgcatatctaaacatatatgaacatagagtaggtatagcaaagatacagtgttatcctcttt-gggaccatggctg-gcatgtggtatgtggttgactgaaaggttgtcctgagatgcatggct i calJac3.chr19 C 0 C 0 e mm10.chr1 178736591 15 + 195471971 I e canFam3.chr7 36312726 0 + 80974532 C a score=7129.000000 s hg38.chr1_KI270759v1_alt 140645 3 + 425601 ATA s panTro4.chr1 224892163 3 + 228333871 ATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226247658 3 - 229942017 ATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140140185 3 - 143122389 ATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16855244 3 - 229590362 gTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615893 3 - 227556264 gTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16666859 3 - 220367699 GTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465962 3 + 85787240 gTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14145566 3 - 49578535 gTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36312726 3 + 80974532 ACA i canFam3.chr7 C 0 C 0 e mm10.chr1 178736591 15 + 195471971 I a score=1279592.000000 s hg38.chr1_KI270759v1_alt 140648 374 + 425601 TTAAGGTATACACTGGGTTTGGCTGCTTCTATACAAGGAGTTTGGATAAATT--TCATATAGTGTCAGTCAAAAAAGTATAAGAAAATTAAGCCAAGTATAAGAAGCTGTGATTT-GTCCCAGACATCATGACCTCAGAAACAGAGTGTCTGTGTAGGTGACT--GCTCTACAATAGGCTCAGGAAGGCATCGTGTCTGAGGGCCCAGGCTACAGACTCCTAAGTGTGTTTTTAGCCCCCAAGGCCATCTCC-TTTTGGTCATTATGGAAATTCTGGAGCTTAATTAAAAGGAACCTAGAGTGCAACCTTTAGATTTAAGAGTAATAGAAAGAATAACTCCAAAA----------------CCTGTTTATTGTAGGGCAGTTAACT-----CT---TATGTGAG s panTro4.chr1 224892166 372 + 228333871 TTAAGGTACACACTGGGTTTGGCTGCTTCTATACAAGGAGTTTGGATAAATT--TCATATAGTGTCAGTCAAAAAAGTATAAGAAAATTAAGCAAAGTATAAGAAGCTGTGATTT-GTCCCAGACATCATGACCTCGGAAACAG--TGTCTGTGTAGGTGACT--GCTCTACAATAGGCTCAGGAAGGCATCGTGTCTGAGGGCCCAGGCTACAGACTCCTAAGTGTGTTTTTAGCCCCCAAGGCCATCTCC-TTTTGGTCATTATGGAGATTCTGGAGCTTAATTAAAAGGAACCTAGAGTGTAACCTTTAGATTTAAGAGTAATAGAAAGAATAACTCCAAAA----------------CCTCTTTATTGTAGGGCAGTTAACT-----CT---TATGTGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226247661 374 - 229942017 TTAAGGTACACACTGGGTTTGGCTGCTTCTATGCAAGGAGTTTGGATAAATT--TCATATAGTGTCAGTCAACAAAGTATAAGAAAATTAAGCAAAGTATAAGAAGCTGTGATTT-GTCCCAGACATCATGACCTGGGAAACAGAGTGTCTGTGTAGGTGACT--GCTCTACAATAGGCTCAGGAAGGCATCATGTCTGAGGGCCCAGGCTACAGACTCCTAAGTGTGTTTTTAGCCCCCAAGGCCATCTCC-TTTTGGTCATTATGGAGATTCTGGAGCTTAATTAAAAGGAACCTAGAGTGTAACCTTTAGATTTAAGAGTAATAGGAAGAATAACTCCAAAA----------------CCTGTTTATTGTAGGGCAGTTAACT-----CT---TATGTGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140140188 370 - 143122389 TTAAGGTACACACTGGGTTTGGCTGCTTCTTTACAAGGAGCTTGGATAAATT--TCATATAGTGTCAGTCAAAAAAGTATAAGAAAGTTAAGCAAAGTATAAGAAGCTGTGATTT-GTCCCAGACATCATGACCTCGGAAACAGAGTGTCTGTGTAGGTGACT--GTTCCACGATAGGCTCAGAAAGGCATCATGTCTGAGCGCCCAGGCTACAGACTCCTAAGTGTGTTTTTAGCCCCCAAGGCCATCTCC-TTTTGGTCATTATGGAGATTCTGGAGCTTAATTAAAAGGAACCTAGAGTGTAACCTTTACATTTAAGAGTAAT----AGAATAACTCCGAAA----------------CCTGTTTATTGTAGGGCAGTTAACT-----CT---TATGTGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16855247 370 - 229590362 CTAAGGTACGCACTGGGTCTGGCTGCTTCTATACAAGGAGCTTGGATAAATT--TCATATAGTGTCAGTCAAAAAAGTATAAGAAAATTAAGCAACGTATAGGAAGCTGCGATTT-GTCCCAGACATCATGACCTCAGAAACAGAGTGGCCGTGTAGGTGACT--GCTCTACAACAGGCTCAGGAAGGCATCATGTCTGAGGGCCCAGGCTACAGACTCCTAAGTGTGTTTTTAGCCCCCAGCGCCATCTCC-TTTTGGTCATTATGGAGTTTCTGGAGTTTAATTACAAGGAACCTAGAGTGTAACCTTTAGATTTAAGAGTAAT----AGAGTAACTCTAAAA----------------CCTGTTTATTGTAGAGCGATGAACT-----CT---TATGTGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223615896 370 - 227556264 CTAAGGTACGCACTGGGTCTGGCTGCTTCTATACAAGGAGCTTGGATAAATT--TCATATAGTGTCAGTCAAAAAAGTATAAGAAAATTAAGCAACGTATAGGAAGCTGTGATTT-GTCCCAGACATCATGACCTCAGAAACAGAGTGGCCGTGTAGGTGACT--GCTCTACAACAGGCTCAGGAAGGCATCATGTCTGAGGGCCCAGGCTACAGACTCCTAAGTGTGTTTTTAGCCCCCAGCGCCATCTCC-TTTTGGTCATTATGGAGCTTCTGGAGTTTAATTACAAGGAACCTAGAGTGTAACCTTTAGATTTAAGAGTAAT----AGAGTAACTCTAAAA----------------CCTGTTTATTGTAGAGCGATTAACT-----CT---TATGTGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16666862 370 - 220367699 TTAAGGTACGCACTGGGTTTGGCTGCTTCTATACAAGGAGCTTGGATAAATT--TCATATAGTGTCAGTCgaaaaagtataagaaaattcAGCAAAGTATAGGAAGCTGTGATTT-GTCCCAGACATCATGACCTCAGAAACAGAGTGGCCGTGTAGGTGACT--GCTCTACAACAGGCTCAGGAAGGCATCACGTCTGAGGGCCCAGGCTACAGGCTCCTAAGTGTGTTTTTCGCCCCTGAGGCCATCTCC-TTTTGGTCATTATGGAGTTTCTGGAGTTTAATTACAAGGAACCTAGAGTGTAACCTTTAGATTTAAGAGTAAT----AGAGTAACTCTAAAA----------------CCTGTTTATTGTAGAGCAATGAACT-----CT---TCTGTGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82465965 370 + 85787240 TTAAGGTATGCACTGGGTTTGGCTGCTTCTATACAAGGAGCTTGGATAAATT--TCATCTAGTGTCAGTCGAAAAAGTATAAGAAAATTAAGCAAAGTATAGGAAGCTGTGATTT-GTCCCAGACATCATGACTTCAGAAACAGAGTGGCCGTGTAGGTGACT--GCTCTACAACAGGCTCAGGAAGGCATCATGTCTGAGGGCCCAGGCTACAGACTCCTAAGTGTGTTTTTAGCCCCCAGCGCCATCTCC-TTTTGGTCATTATGGAGTTTCTGGAGTTTAATTACAAGGAACCTAGAGTGTAACCTTTAGATTTAAGAGTAAT----AGAGTAACTCTAAAA----------------TCTGTTTATTGTAGAGCAATTAACT-----CT---TATGTGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14145569 369 - 49578535 TTAAGGTCCACACTGGGCTTGGCTGCTTCTATACAAAA-----GGATAAATT--TCATATAGTGTCAGTCAAAAAAGTATAAGAAACTTAAGCAAAGAATAAGAAGCTGTGATTT-GTCCCAGACATCATGACCTCAGAAACAGAGTGGCCGTGTAGATGGCT--GCCCTCCAAGAGGCTCAGGAGGGCATCATGTCTGGGGGCCCAGGCCACTGACTCCTAAGTGTGTTTTTAGCCCCTGAGGCCATCTCC-TTTTGGTCATTATGGAGATTCTGGAGCTTAATGACAAGGAACCTAGAGTGTAACCTTTAGATTTAAGAGCAATCGAAAGAATAACTCCAAAA----------------CCTGTTTATTGCAGGGCAGTTAACT-----CT---TATGTGAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178736606 379 + 195471971 TTTAGGTAGACACTGGGTCTGCTTGTTTCT---CAGAAGGTTT--------------TATAGTGCTACTCAAGAGAAGTAAATGGAAGGGAGCAAAAGGTAGGAAGTGGAGATTTAGTCTCA---AGTGCAACCTTGGATGTAGACTAGCCATGTGGGGCACC-AGACCAGGAATGGGCTCAGAAAGGCACTATGCCTGTAGCTGCAGAGTCCTAGTTCCCAAGGGGGCATTTATCCAGGAGGCTCACCTCC-TTTTGGTAATTATGGAGGCTCTGGAGGTTAAATAGGAAAACCCTAAATTGCAACTGCTATACTTGAGAGTAAGCTTTAAAAAAATACTAAAAACAAGCAAACACTGCCCCCCCCCAAAAAAAACCTATCATCTAGAAACT---CATATGAA i mm10.chr1 I 15 C 0 s canFam3.chr7 36312729 361 + 80974532 TCAGGGAACACACTGGGTGTGGCTGCTTCTATAGAGGTAACA-AGGTAACTTGCTTTTATAGAGCTAGCTACAAA----TAAAA------AGGAAAGTATAAGAAGCTAGGATTAGGTCCTAGACATC--TGCCTCAGAAACAGAGTGGCCATGCATGTGACTCAGGCCTCAGGCAGGCTTAGAAATGCAACAGGTCTG-GGTCCTGGAATACTGCCTCCCAGTTGGAA----AACCCCCAGGGTCACTTCCTTTTTGGTCAATTTGGAGGTTCTAGAGCTTAATTAAAAGGAGTCTATAGAGTGATCTTTGGGCTTAAGAGTAATCTAGAAAGTAATCACAGAA----------------CC----TATTATAAAGAAGTTTACT-----CTTAATAAGTAAG i canFam3.chr7 C 0 I 119 a score=2124754.000000 s hg38.chr1_KI270759v1_alt 141022 664 + 425601 CTCT---TCATCTCATG----------------ATAGAAAAGGGTCC-----------------CTGGTGGA-GGGGTCTGATACAATTATA-ATTCTG--CTCTCCCCCAATCCCCAAAGCATCAAAATAGAACTCTGGCCCCTCTCATTATATAGA-GAAGCAAATCGTTACTGTGATCACTAGGGAGTTCCCACCAGCATTGCTGTGGGTCCTGAAAGAGAAAAGGAGGTTCCATGATTT-GGGAAGTAAGTTTCATTTTCTTTCATATTTGGAGAGATAGTTTCTGA-TTACAGCCAGTGGTCTCTTCTGTAAATATAGGTGGGCCATGGACTCTAGAGACTCTCAGGATATAATCTG----------------AAGGATTGATTGCATATG----------AACCTGC-CTACAGATGCAGCTCTTGGTTCTGTTTTGGCTTTGCCTCCT--CCCCTCACTGTGTGGTGGGTGGAGCTGGCTCCTCTCAAGCTGGTGCCTTCCTGGTGTGCTTGCTGCTGCTGTGGTGCCCGTGGCCCATCTGAATTAACATCTTCTGCGGTGCTTTAGGGTGCTTTGCACAAAGTCACTTGAGACTGA-TGGTGCTAAGGA-CTCATGGGTAATGGTCTAGTCTTAATGTTCTAATTCAATCCAATCCAAC---------------------------------TTTTTTGTTTTGCAT-------------ATCTACAAAGTGCATAGGAATATGCTTCGTACTGGGAGGAGAACTCATAGTGCTTA s panTro4.chr1 224892538 664 + 228333871 CTCT---TCTTCTCATG----------------ATAGAAAAGGGTCC-----------------CTGGTGGA-GGGGTCTGATACAATTGTA-ATTCTG--CTCTCCCCCAATCCCCAAAGCATCAAAATAGAACTCTGGCCCCTCTCATTATATAGA-GAGACAAATCGTTACTGTGATCACTAGGGAGTTCCCACCAGCACTGCTGTGGGTCCTGAAAGAGAAAAGGAGGTTCCACGATTT-GGGAAGTAAGTTTCATTTTCTTTCATATTTGGAGAGAGAGTTTCTGA-TTACAGCCAGTGGTCTCTTCTGTAAATATAGGTGGGCCATGGACTCTAGAGACTCTCAGGATATAATGTG----------------AAGGATTGATTGCATATG----------AACCTGC-CTACAGATGCAGCTCTTGGTTCTGTTTTGGCTTTGCCTCCT--CCCCTCACTGTGTGGTGGGTGGAGCTGGCTCCTCTCAAGCTGGTGCCTTCCTGGTGTGCTTGCTGCTGCTGCGGTGCCCGTGGCCCGTCTGAATTAACATCTTCTGCGGTGCTTTAGGGTGCTTTGCACAAACTCACTTGAGACTGA-TGGTGCTAAGGA-CTCATGGGTAATGGTCTAGTCTTAATGTTCTGATTCAATCCAATCCAAC---------------------------------TTTTTTGTTTTGCAT-------------ATCTACAAAGTGCGTAGGAATATGCTTCGTACTGGGAGGAGAACTCATAATGCTTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226248035 663 - 229942017 CTCT---TCATCTCATG----------------ATAGAAAAGGGTCC-----------------CTGGTGGA-GGGGTCTGATACAATTGTA-ATTCTG--CTCTCCCCCAATCCCCAAAGCATC-AAGTAGAATTCTGGCCCCTCTCATTATATAGA-GAGACAAATTGTTACTGTGATCACTAGGGAGTTCCCACCAACATTGCTGTGGGTCCTGAAAGAGAAAAGGAGGTTCCATGATTT-GGGAAGTAAGTTTCATTTTCTTTCATATTTGGAGAGATAGTTTCTGC-TTACAGCCAGTGGTCTCTTCTGTAAATATATGTGGGCCATGAACTCTAGAGACTCTCAGGATATAATCTG----------------AAGGACTGATTGCATATG----------AACCTGC-CTACAGATGCAGCTCTTGGTTCTATTTTGGCTTTGTCGCCT--CCCCTCACTGTGTGGTGGGTGGAGCTGGCTCCTCTCAAGCTGGTGCCTTCCTGGTGTGCTTGCTGCTGCTGCGGTGCCCGTGGCCCGTCTGAATTAACAGCTTCTGCGGTGCTTTAGGGTGCTTTGCACAAAGTCGCTTGAGATTGA-TGGTGCTAAGGA-CTCATGGGTAATGTTCTAGTCTTAATGTTCTAATTGAATCCAATCCAAC---------------------------------TTTTTTGTTTTGCGT-------------ATCTACAAAGTGCGTAAGAATATGCTTAGTACTGGGAGGAGAATTCATAGTGCTTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140140558 664 - 143122389 CTCT---TCATCTCATG----------------GTAGAAAAGCCTCC-----------------CTGGTGGA-AGGGTCTGATAGAATTGTA-ATTCCG--CTCTCCCCCAATCCCCAAAGCATCAAAGTAGAACTCTGGCCCCTCTCATTATATAGA-GAGACAAATTGTTACTGTGATCACTAGGGAGTTCCCACCAGCATTGCTGTGGGTCCTGAAAGAGAAAAGGAGGTTCCATGATTT-GGGAAGTAAGTTTCATTTTCTTTCATATTTGGAGAGGGAGTTTCTGA-TTACAGCCAGTGGTCTCTTCTGTAAATATATGTGTGCCATGGACTCTAGAGACGCTCAGGATATAATCTG----------------ACGGATTGATTGCATGTG----------AACCTGC-CTACAGATGCAGCGCTTGGTTCTGTTTTGGCTTTGCCTCCT--CGCCTCACTGTGTGGTGGGTGGAGCTGGCTCCTCTCAAGCTGGTGCCTTCCTGGTGTGCTTGCTGCTGCTGCGGTGCCAGTGGCCCGTCTGAATTAACAGCTTCTGTGGTGCTTTAGGGTGCTCTGCACAAAGTCACTTGAGACTGA-TGGTGCTAAGGA-TTCATGGGTAATGTTGTAGTCTTAATGTTCTAATTCAATCCAATCCAAC---------------------------------TTTTTTGTTTTGCAT-------------ATCTACAAAGTGCATAAGAATATGCTTAGTACTAGGAGGAGAATTCATAATGCTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16855617 646 - 229590362 CTCT---TTATCTCATG----------------ATAGAGAAGGCTCC-----------------CTGGTGGA--GGGTCCGACACAATTGTA-ATTCTG--CTCTCCACCCGTCCCCAAAGCATTAAAGTAGAACTCTGGCCCCTTGCATTACAT--A-GAGACAAATGGTTACTGTGATCAC-AGGGAGTGCCCACCAGTATCGCTGTGGGTCCTGAAAGAGAAAAGGAGGTTCCATGATTT-GGCAAGTAAGTTTCATTTTCTCTCATATTTGGAGAGAGAGTTTCTGA-TTACAGCCAGTGGTCTCTTCTGTAAATATATGTGTGCCATGGACTCTAGAGACCCTCAGGGTATAATCTG----------------ATGGACTGATTGCGTGTG----------AACCTGC-CTACAGGTGCAGCTCTTGGTTCTGTTCTAGCTTTGCCTCCT--CCTGTCGCTGTGTAGTGGGTGGAGCTGGCTCCTCTCAAGCTGGTGCCTTTGTGGTGTGCTTGCTGCTGCTGCAGGACCCGTGGCCCGTCTGAATTAACAGCTTCTGCCGTGCTTTACGGTGCTTTGCACAAAGTCACTTGAGACTGA-TGGCGCTAAGGA-CTCATGGGTAATGTTCTAGTCTTAATGTTCTAATTCAATCCAGTCCAGC---------------------------------TTTTTTGTTTTGCAT-------------ATCTACAAAGTGAGTAAGAATATGCTTAGTGCTGGGAGGAGA-------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223616266 646 - 227556264 CTCT---TTATCTCATG----------------ATAGAGAAGGCTCC-----------------CTGGTGGA--GGGTCCGACACAATTGTA-ATTCTG--CTCTCCACCCGTCCCCAAAGCATCAAAGTAGAACTCTGGCCCCTTGCATTACAT--A-GAGACAAATGGTTACTGTGATCAC-AGGGAGTGCCCACCAGTATCGCTGTGGGTCCTGAAAGAGAAAAGGAGGTTCCATGATTT-GGCAAGTAAGTTTCATTTTCTCTCATATTTGGAGAGAGAGTTTCTGA-TTACAGCCAGTGGTCTCTTCTGTAAATATATGTGTGCCATGGACTCTAGAGACCCTCAGGGTATAATCTG----------------ATGGACTGATTGCGTGTG----------AACCTGC-CTACAGGTGCAGCTCTTGGTTCTGTTCTAGCTTTGCCTCCT--CCTGTCGCTGTGTGGTGGGTGGAGCTGGCTCCTCTCAAGCTGGTGCCTTTGTGGTGTGCTTGCTGCTGCTGCAGGACCCGTGGCCCGTCTGAATTAACAGCTTCTGCCGTGCTTTACGGTGCTTTGCACAAAGTCACTTGAGACTGA-TGGCGCTAAGGA-CTCATGGGTAATGTTCTAGTCTTAATGTTCTAATTCAATCCAGTCCAAC---------------------------------TTTTTTGTTTTGCAT-------------ATCTACAAAGTGAGTAAGAATATGCTTAGTGCTGGGAGGAGA-------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16667232 649 - 220367699 CTCT---TTATCTCATG----------------ATAGAGAAGGCTCC-----------------CTGGTGGA--GGGTCCGACACAATTGTA-ATTCTG--CTCTCCACCGGTCCCCAAAGCATCCAAGTAGAACTCTGGCCCCTCGCATTACATAGA-GAGACAAATGGTTACTGTGATCACTAGGGAGTGCCCACCAGTATTGCTGTGGGtcctgaaagagaaaaggaggttCCATGATTT-GGCAAGTAAGTTTCATTTTCTCTCATATTTGGAGAGAGAGTTTCTGA-TTACAGCCAGTGGTCTCTTCTGTAAATGTATGTGTGCCATGGACTCTAGAGACCCTCAGGATATGATCTG----------------ACAGGTTGATTGCGTGTG----------AACCTGC-CTACAGGTGCAGCTCTTGGTTCTGTTCTAGCTTTGCCTCCT--CCCGTCGCTGTGTGGTGGGTGGAGCTGGCTCCTGTCAAGCTGGTGCCTTTGTGGTGTGCTTGCTGCTGCTGCAGGACCTGTGGCCCGTCTGAATTAACAGCTTCTGTGGTGCTTCAGGGTGCTTTGCACAAAGTTACTTGAGACTGA-TGGTGCTAAGGA-CTCATGGGTAATGTTCTAGTCTTAATGTTCTAATTCAATCCAgtccaac---------------------------------ttttttgttttgcat-------------atcTACAAAGTGAGTAAGAATATGCTTAGTGCTGGGAGGAGA-------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82466335 658 + 85787240 CTCT---TTATCTCATG----------------ATAGAGAAGTCTCC-----------------CTGGTGGA-GGGGTCCCGTACAATTGTA-ATTCTG--CTCTCCACCAGTCCCCAAAGCATCAAAGTAGAACTCTGGCCCCTCGCATTATATAGA-GAGACAAATTGTTGCTGTGATCACTAGGGAGTTCCCACCAGTATCGCTGTGGGTCCTGAAAGAGAAAAGGAGGTTCCATGATTT-GGCAAGTAAGTTTCATTT----TCATATTTGGAGAGAGAGTTTCTGA-TTACAGCCAGTGGTCTCTTCTGTAAATATATGTGTGCCATGGACTCTAGAGACCCTCAGGATATAATCTG----------------ATGGATTGGTTGCGTGTG----------AACCTGC-CTACAGATGCAGCTCTTGGTTCTGTTGTAGCTTTGCCTCCT--CCCGTCGCCGTGTGGTGGGTGGAGCTGGCTCCTCTCAAGCTGGTGCCTTTGC--TGTGCTTGCTGCTGCTGCAGGACCCGTGGCCCGTCTGAATTAACAGCTTCTGCGGTGCTTCAGGGTGCTTTGCACAAAGTCACTTGAGACTGA-TGGCGCTAAGGA-CTCATGGGTAATGTTCTAGTCTTAATGTTCTAATTCAATCCAATCCAAC---------------------------------TTTTTTGTTTTGCAT-------------ATCTACAAAGTGAGTAAGAATATGCTTAGCGCTGGGAGGAGAATTCATAATGCTTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14145938 653 - 49578535 CTCT-----GTCTCCTG----------------ATAAAG-AGCCTCC-----------------CTGGTGGA--GTGTCTGATACAATTGCA-GTTCTGTTCTCTCCCCAAGTCCGCAAAGCATCAAAGTGGAGCTCTGGCCGCTCTCATTTTATATA-GAGACAAGTTGTAAC--TGATCACTAGGGAGTTCCCACCAACATTGCTGTGGGTCCTGGAAAAGAAAAGGAGGTTCCATCATTT-GGGAAGTAAGTTTCATTTTCTTTCCTATTTGGAGAGAGAGTTTCTGA-TTCCAGCCAGTGGTCTCTTCTGTCAATATATGTGTGCCTCAGACTCTGGAGACTGTCAGGATAGAATCTG----------------ATGGATTGATTGCATGTG----------AATCTGG-CTACAGATGCAGCTCTCGGTTCTGTTTCAGCTTCACTTCTT--CCC-TCACTGTGTGGTGGGTGGAGCTGGGTCCTCTCGA------GCCTTCCTGCTGTGCTTGCTGCTGCTACGGTGCCCACCATCCATCTGAATTGACAGCTTATGTGGCGCTTTGGGGTGCTTTGCGCAAGGTCACTTGAGACTGG-TGGTGCTAAGGA-CTCATGGGTCATGTTCTAGCTTTAATGTTTTAATTCAATCCATTCCAAC---------------------------------TTTTTTGTTTTGCAT-------------ACCTACAAAGTGAATAAGAATATGCTTAGCACTGGGAGGAGAATTCCTAATGCTTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178736985 687 + 195471971 TAGTAGTATGTCTCATG-------------------GGGAATTCTCC-----------------CTGAAGAA--GTGTCTGATAGAACTAAAGGCTCTT--CCCTCTCCCAGTTTGCAAAGGATT-------AACTCCAGCCCCTCTCATTTCTT--A-CAGGCCAATTGCTACTGGTGTCCCTGTGGTGTGCCCACAGATGGTGCAGTGGGTCCTGGAAGGGAAAAGAAAGTTATGTTATTCAGGGAAGAAAATGGAATCTTCCCTCACATTTGGAGACTATGTTTCTTACCTTTAGCCCGTGGTCTCTATGATAAGGGC-CATCTTCCACAAACTCTATGAACTCCTGGGATATAGTTAGGTTGACTATCAATACTATCGATTGATTGACAGTGGTAGATTGGTACTCTACTTTGCAGATGTTAGCCCTGCTTCAGTATTAGCTTTGTCTGTTTGCTTATCACTGTGAGGAGGGCAG----------------------GTCTTGATGGTGTCCTTGCTGACCCAGCGCTGCA----------CTG---TGACAGCTCCTGTG----TTCTATGTTTGCTGCAGAAAATCACT---GAGTGGTTAGCGCTGAGGAGCACATGGGTGGTATTATAGTTTTAACTTTTCAGATTAAGTCAGCACTGCAGGGCttttgttttgttttgttttgttttgttttgttttgttttgtttgtttgtttAAAGCATCCACAGAGCGAGTAAGAAT----TGAGCACCAGGAGGAGAAATCAGAGTTCTTA i mm10.chr1 C 0 I 10 s canFam3.chr7 36313209 681 + 80974532 ctct---gtatctcatgaataaaaaaataaaataaaaagaaGCTTACTCAAAAAACAAAGAAGTTTAGTAGAAGGTATCTGATGGAACTGCCCGTCCTG--CTCCCTCCCCATTCACAAAGCATCAGAAGGGAA-TCCAGCCCCTCCCATTTTATACATTTTACAAATCTTTACTGT-ATCACTAGGAAATTCCCACAGACACTGATGTGGATTCTGGTAGAGGAAAGGGGGTTCTATTATTT-GGGAAGTAAATTTCATTTTCTTTCCTATTTGGAGATACAGTGTCTGA-CTACAGCCCCTAGCCTCTGCCATAAAGATACACGTACCTCAAACACCATAGACTCTCGGGATATAATCTG----------------ATTGGGTGGT------------------AACCCGCCCTACAGTTGCAGCCCTGGGTTCTGATCGAGCTTCGCCT-----CACAGCAC-ACGGGGTGCATCCAGCTGGCTCTTCTTGTGCAAG-------CTGGTATGCTCAATGTTGCCACTGTGGCC-TCACACATTCAATTCGACAGCTCACAAGGTGTTTT---GATCTGTGCTTAAGGCTGCTTGCTGTGGA-CAGTGCCACGGAGCTCGTGGGTAATGGTCGAGGCTTGATGTTTTAATTCCGTTCCATCTGGC------------------------------TCATCTTTTGTTCTGAGT------------TATCTCCTAAATGAGTAAGAATATGGTTAATACTGGGAGGATGAATCATAACTCCCA i canFam3.chr7 I 119 C 0 a score=54514.000000 s hg38.chr1_KI270759v1_alt 141686 30 + 425601 ATAAGGACtgctatggtctgaatgttggtg----- s panTro4.chr1 224893202 30 + 228333871 ATAAGGACtgctatggtctgaatgttggtg----- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226248698 30 - 229942017 ATAAGGACtgctatggtctgaatgttggtg----- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140141222 30 - 143122389 ATAAGGACtgctataatctgaatgttggtg----- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16856263 25 - 229590362 ----------TAatgatctgaatgttggtgtgttg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223616912 25 - 227556264 ----------TAatgatctgaatgttggtgtcttg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16667881 25 - 220367699 ----------TAatggtctgaatgttggtgtcTCG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82466993 35 + 85787240 ATAAGGACTGTAatggtctgaatgttggcgtctca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14146591 30 - 49578535 ATAAGGACTGCACtggtctgaatgttggtg----- i calJac3.chr19 C 0 C 0 e mm10.chr1 178737672 10 + 195471971 I e canFam3.chr7 36313890 0 + 80974532 C a score=477477.000000 s hg38.chr1_KI270759v1_alt 141716 150 + 425601 tgcccctacaattcccatatgggaaacttgatcttcaatgc-tatagtatt-aaaagatggagcctttaggaggggatcaggtctcgagggctccatcctcatgaataggattagtgcccttatcaaagaggccagcaggaacttgtccctc s panTro4.chr1 224893232 150 + 228333871 tgcccctacaattcccatatgggaaacttgatcttcaatgc-tatagtatt-aaaagatggagcctttaggaggggatcaggtctcgagggctccaccctcatgaataggattagtgcccttatcaaagaggccagcgggaacttgtccctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226248728 150 - 229942017 tgcccctaaaattcccatatgggaaacttgatattcaatgc-tatagtatt-aaaagatggatcctttaggaggggatcaggtctcgagggctccaccctcatgaataggattagtgcccttatcaaagaggccagcaggaacttgtccctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140141252 150 - 143122389 tgcccctaaaattcccatgtgggaagcttgatcttcaatgc-tatagtatt-aaaaggtggagcctttaggaggggatcaggtctcgagggctccaccctcatgaataggattagcggccttatcaaagaggccagcgggaacttgtccctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16856288 150 - 229590362 tgcccctaaaattcccaggtgggaaacttggtcttcagtgc-tgtagtatt-aagaggtggagcctttaggaggggatcaggtctggagggctccaccctcatgaacaggatggctgcccttatcaaagaggccagcgggaacttgtccctc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223616937 150 - 227556264 tgcccctaaaattcccaggtgggaaacttggtcttcagtgc-tgtagtatt-aagaggtggagcctttaggaggggatcaggtctggagggctccaccctcatgaataggatggctgcccttatcaaagaggccagcgggaacttgtccctc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16667906 150 - 220367699 TGCCCCTAAAATTCCCAGGTGGGAAACTTGGTCTTCAGTGC-tgtagtatt-aagaggtggagcctttaggAGGGGATCAGGTCtcgagggctccaccctcatgaatagGATGGCTGCCCTTATCAAAGAGGCCAGCGGGAACTTGTCGCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82467028 150 + 85787240 tgcccctaaaattcccaggtgggaaacttggtcttcaatgc-tgtagtatt-aagaggtggagcctttaggaggggatcaggtctggagggccccaccctcatgaataggatggctgcccttatcaaagaggccagcgggaacttgtccctc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14146621 150 - 49578535 tgcccc-aaaatctgtatgtgggaaacttgatcttcagtgc-tgtagtattaaagacgtagagcctttcggaggtgatcaggtcacaagcgctccaccctcatgaacgggattagtgtccttgtcagagagaccagtgggaacttgtccctc i calJac3.chr19 C 0 C 0 s mm10.chr1 178737682 150 + 195471971 tgtcccca-aactcctgtgttggaggcttaattcccaatgcttgtagtacc-caaacgtgaggcttgtaggaagtaattagactaggaggactctactcacagaggcatgactgatgtccttctaaaagagccctgagggagtccgtccttc i mm10.chr1 I 10 I 104 e canFam3.chr7 36313890 0 + 80974532 C a score=1091100.000000 s hg38.chr1_KI270759v1_alt 141866 406 + 425601 ccttcgaggtgggaggcggggctggactctggagctgggctcagacaccagaccaaaatgaggactagataaaacagggaaggggcaaaagcagcttttcataagacatgcccaccagtgtgccatgtccgtttactattgtcccaacaacactcaggagttaccgcccctttccgtggcagtgaccccacgacccagaagttcctacccttgtcctagaaatttctgcataaactaccccttaatctacatgtaattaaaagtaaatataaatatgactgcaaaactgccttgagctgccactctcagcacactgcctatggggtagccctgctctgcaggaccagttatggacctgtaacactactggagctgtgacaccgcctctttaataaagctgttttct s panTro4.chr1 224893382 406 + 228333871 ccttcgaggtgggaggcggggctggactctggagttgggctcagacaccagaccaaaatgaggactagataaaacagggaaggggcaaaagcagcttttcataagacatgcccaccagtgtgccatgtccgtttactattgtcccaacaacactcaggagttaccgcccctttccgtggcagtgaccccacgacccagaagttcctacccttgtcctagaaatttctgcataaactaccccttaatctacatgtaattaaaagtaaatataaatatgactgcaaaactgccttgagctgccactctcagcacactgcctatggggtagccctgctctgcaggagcggttatggaactgtaacactactggagctgtaacaccgcctctttaataaagctgttttct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226248878 406 - 229942017 cctttgaggtgggaggcgggactggactctggagctgggctcagacaccagaccaaaattaggactagataaaacagggaaggggcaaaagcagcttttcataagacatgcccaccagtttgccatgtcagtttactattgtcccaacaacactcaggagttaccgtccctttccgtagcagtgaccccacgacccagaagttcctacccttttcctagaaatttctgcataaactaccccttaatctacatgtaattaaaagtaaatataaacatgactgcaaaactgccttgagctgccactctcagcacactgcctatggggtagccctgctctgcaggagcagttatggaactgtaacactactggagctgtaacaccgcctctttaataaagctgttttct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140141402 406 - 143122389 cctgtgagttgggaggcggggctcgactctggaggtgggctcagacaccagaccaaaacgaggactagataaaacagggaaggagcaaaagcagcttttcataagacatgcccaccagtgtgccatgtcagtttactactgtcccagcaacactcaggagttaccgcccctttccgtggcagtgaccccacgacccagaatttcctactcttttcctagaaatttctgcataaactaccccttaatctgcatgtaattctaagtaaatataaatatgactgcaaaactgccctgagctgccactctcagcacacggcctagggggtagccctgctctgcaggagcagttatgaaactgcagcactactggagctgtgacaccgcctctttaataaagctgttggct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16856438 392 - 229590362 cctttgagacaggaggcgggactcgactctggaggtggactcagacaccggacggaaatgaggactagataaaacagggaaggggcagaagcagcttttcataagacatgcccaccagtgtgccatgtcagtttactattgtcccagtaacactcaggagttaccacccctttccatggcagtgaccccatgacccagaagttcctacccttttcctagaaatttctgcataagctcccccttaatctacatgtaactaaaagtaaatataaatatgactgcaaaactgccctgagctgctgctctcagcacactgcctacggggtagccctgctctgcaggggcagcca-ggaactgtgacactgctggagccgtaaa-------------taaagctgttttct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223617087 405 - 227556264 cctttgagacaggaggcgggactcgactctggaggtggactcagacaccggacggaaatgaggactagataaaacagggaaggggcagaagcagcttttcataagacatgcccaccagtgtgccatgtcagtttactattgtcccagtaacactcaggagttaccacccctttccatggcagtgaccccatgacccagaagttcctacccttttcctagaaatttctgcataagctcccccttaatctacatgtaactaaaagtaaatataaatatgactgcaaaactgccctgagctgctgctctcagcacactgcctatggggtagccctgctctgcaggggcagcca-ggaactgtgacactgctggagccgtaacaccacctcttcattaaagctgttttct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16668056 405 - 220367699 CCTTTGAGATGGGAGGCGGGACTCGACTCTGGAGGTGGACTCAGACACCGGACGGAAATGAGGACTAGATAAAACAGGGAAGGGGCAGAAACAGCTTTTcataagacatgcccaccagtgtGCCGTGTCAGTTTACTATTGTCCCAGCAACACTCAggagttaccacccctttccatggcagtGACCCCATGACCCAGAAGTTCCTacccttttcctagaaatttctgcataagcTACCCCTTAATCTACATGTaactaaaagtaaatataaatataactgcaaaactgccctgagctgctgctctcagcacactgcctatggggtagccctgctctgcaggggCAGCCA-GGAACTGTGACACTGCTGGAGCCATAACACCGcctcttcaataaagctgttttct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82467178 405 + 85787240 cctttgagacgggaggcgggactcgactctggaggtggactcagacactgaacggaaatgaggactagataaaacagggaaggggcagaagcagcttttcataagacaggcccaccagtgtgccatgtcagtttactattgtcccagcaacactcaggagttaccacccctttccatggcagtgaccccatgacccagaagttcctacccttttcctagaaatttctgcataagctaccccttaatctacatgtaactaaaagtaaatataaatatgactgcaaacctgccctgagctgctgctctcagcacactgcctgtggggtagccctgctctgcaggggcagcca-ggaaccgtgacactgctggagccgtaacaccgcctcttcaataaagctgttttct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14146771 370 - 49578535 cttTtgaggtgggaggcgggacttgactctggaggtgggctcagacccctgaccgaaat-atgactag--taaacagggaatgggcagaagcagcttttggt-agacacgcccaccagttgcccatgtcagtttagtactgtgacagcaacactcaggcgctaccgcctc-ttctgt-gcagtga-cccatgacccagaacttactacccttttccaagaaacttctgcctaaac--acccttcatctacatgtaattaaagt--agtataaatctgactgccaaactgccccgagctgccactctcagcacgc-gcctgggggatgg-cctgttctac------------------gaagcattat--gagccgc-acaccgcctctcaat--aagatgttttct i calJac3.chr19 C 0 I 1813 e mm10.chr1 178737832 104 + 195471971 I e canFam3.chr7 36313890 0 + 80974532 C a score=802570.000000 s hg38.chr1_KI270759v1_alt 142272 353 + 425601 gctaccctaccaccagctcgcccttgaagttttactgggtgaagccaagaactcttgtgggctacgccccactttggggctcacatgccctgcatcaccttttgccatag---gaagacacgttgaaagcactatccattagtaat-ggcccttgccagacaccaaatctgctggcactttgatcttagacttcccagcctccagctgtgaccaataaattccattttatttgtatgttttttttgttgttgttttttcttgagacagggtctcactctgttgcccaggctggagtgcagtggcatgatcttggctcactgcaacctccgccactcaggtgcaagcgattctcctgc s panTro4.chr1 224893788 353 + 228333871 gctaccctaccaccagctcgcccttgaatttttactgggtgaagccaagaactcttgtgggctatgccccactttggggctcacatgccctgcatcaccttttgccatag---gaagacacattgaaagcactatccattagtaat-ggcccttgccagacaccaaatctgctggcactttgatcttagacttcccagcctccagctgtgaccaataaattccattttatttgtatgttttttttgttgttgttttttcttgagacagggtctcactctgttgcccaggctggagtgcagtggcatgatcttggctcactgcaacctccgccactcaggtgcaagcgattctcctgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226249284 354 - 229942017 tctaccctaccaccagctcgcccttgaatttttattgggtgaagccaagaactcttgtgggctatgcctcactttggggctcacatgtcctgcatcaccttttgccatag---gaggacacattgaaagcactatccattagtaatgggcccttgccagacaccaaatctgctggcaccttgatcttagacttcccagcctccatctgtgaccaataaattccgttttatttgtatgttttttttgttgttgttttttcttgagacggggtctcactctgtcgcccaggctggagtgcagtggcatgatcttggctcactgcaacctccgccactcaggtgcaagcgattctcctgc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140141808 354 - 143122389 tctaccctaccaccagctcaccctggaatctttaatgggtgaagcctagaactcttgtgggctacgccccactttggggttcacatgccctacgtcaccttttgccatag---gaggacacattgaaagcactatccattagtaatgggcccttgccagacaccaaatctgctggcaccttgatcttagacttcccagcctccagctgtgacccataaattcaattttatttgtgtttttttgttgttgttgttttttcttgagacaggatctcactctgtcgcccagtctggagtgcagtggcatgatcttggctcactgcaacctccgccactcaggtgcaagcgattctcctgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16856830 353 - 229590362 tctgccctaccatcagctcgcccttgagattttacctggggaagccaagaactcctgtggccttcacctgactttggggctcacatgccctgcatcaccttttgccatgt---gaggacacattgaaagcactatgcattagtaacgggccctcgccagacaccaaatctgctggcaccttgatcttagacttcccagcctccagctgtgaccaataaatttcgttttatttgtgttttgtttgtttgtttg-ttttccttgagacagggtctcactctgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcaacttctgcctctcaggtgccagccattctcctgc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223617492 353 - 227556264 tctgccctaccatcagctcgcccttgagattttacctggggaagccaagaactcttgtggccttcacctgactttggggctcacatgccctgcatcaccttttgccatat---gaggacacattgaaagcactatgcattagtaacgggccctcgccagacaccaaatctgctggcaccttgatcttagacttcccagcctccagctgtgaccaataaattccgttttatttgtgttttgtttgtttgtttg-ttttccttgagacagggtctcactctgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcaacttctgcctctcaggtgccagccattctcctgc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16668461 354 - 220367699 tctaccctACCATCAGCTCGCCCTTGAGATTTTACCTGGTGAAGCCAAGAACTCTTGTGGCCTTCACCCGACTTTGGGGCTCACATGCCCTGCATCACCTTTTGTCATAT---GAGGACACATTGAAAGCACTATGCATTAGTAATGGGCCCtcgccagacaccaaatctgctggcaccttgatcttagacttcccagcctccagctgtGACCAATAAATTCcgttttatttgtgttttgtttgtttgtttgttttttcttgagacagggtctcactctgtcgcccaggctggagtgcagtggcgtgatcttggctctctgcaacttctgcctctcaggtgcaagccgttctcctgc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82467583 357 + 85787240 tctaccctaccatcagctcgcccttgagattttacctggggaagccaagaactcttgtggccttcacccgactttggggctcacaggccctgcatcaccttttgccatgtgaggaggacacattgaaagcattatgcattagtaacgggcccttgccagacaccgaatctgctggcaccttcatcttagacttcccagccgccagctgtgaccaataaattccgttttatttgtgttttgtttgtgtgtttgttttttcttgagacagggtctcactctgtcacccaggctggagtgcagtggcgtgatcttggctcactgcaacttctgcctctcaggtgccagccgttctcctgc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178737832 104 + 195471971 I e canFam3.chr7 36313890 0 + 80974532 C e calJac3.chr19 14147141 1813 - 49578535 I a score=474188.000000 s hg38.chr1_KI270759v1_alt 142625 189 + 425601 ctcagcctcccaagtagctgggactacaggtgcacaccaccacacctggctga---------------ttttttta-ttt-ttttggtagagatggggtttca-tcatgttggccaggc-----------------------------------------------------------------------tggtctcaaactcctgacctcaggtgatctgcccacctgggcctcccaaagtgctgggattacaggcatgagcgaccatgcccggctt s panTro4.chr1 224894141 189 + 228333871 ctcagcctcccaagtagctgggaccacaggtgcacaccaccacacctggctga---------------tttttgta-ttt-ttttggtagagatggggtttca-tcatgttggccaggc-----------------------------------------------------------------------tggtctcaaactcctgacctcaggtgatctgcccacctgggcctcccaaagtgctgggattacaggtgtgagcgaccatgcccggctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226249638 189 - 229942017 cttggcctcccaagtggctgggactacaggtgcacaccaccacacctggctga---------------tttttgta-ttt-ttttggtagagatggggtttca-tcatgttggccgggc-----------------------------------------------------------------------tggtctcaaactcctgacctcaggtgatctgcccacctgggcctccaaaagtgctgggattacaggcatgagccactgtgcccggctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140142162 189 - 143122389 ctcagcctcccaagtagctgggaatacaggtgcacaccaccatacctggctaa---------------tttttgta-ttt-ttttggtgcagatggggtttca-tcatgttggccaggc-----------------------------------------------------------------------tggtctcaaactcctgacctcaggtggtctgcccatctgggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16857183 190 - 229590362 ctcagcctcccaggtcgctgggactacaagtgcaccccaccacacctggcgaa---------------tttttgta-tttgttttggcagagacaggatttca-tcatgttggccaggc-----------------------------------------------------------------------tggtctcaaactcctgaccttgggtgatctgcccacctgggcctcccaaagtgctgggattacaggcgtgagccaccatgcctggcct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223617845 190 - 227556264 ctcagcctcccaggtcgctgggactacaagtgcaccccaccacacctggcgaa---------------tttttgta-tttgttttggcagagacaggatttca-tcatgttggccaggc-----------------------------------------------------------------------tggtctcaaactcctgaccttgggtgatctgcccacctgggcctcccaaagtgctgggattacaggcgtgagccaccatgcctggcct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16668815 190 - 220367699 ctccacctcccagctcgctgggactacaagtgcaccccaccacacctggcaaa---------------tttttgta-tttgttttggtagagacaggatttca-tcatgttggccaggc-----------------------------------------------------------------------tggtctcaaactcctgacctcgggtgatctgcccacctgggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82467940 191 + 85787240 ctccgtctcccaggtcgctgggactacaagtgtaccccaccacacctggcaaa---------------tttttgtatttttttttggtagagacaggatttta-tcatgttggccaggc-----------------------------------------------------------------------tggtctcaaactcctgacctcgggtgatctgcccacctgggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14148954 267 - 49578535 ctcggcctcccaaagttctgggattacaggcgtaagccactgtgtctggccTGAATTCTGtttttttttttttttt-ttt-ttttttttgagatggagttccgctcttgttacccaggctggagtgcaatggtgcgatctcggctcaccgcaacctccgccccctgggttcaggcaattctgcctcaggatggtctagatctcttaacctc--gtgatccacctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcac------- i calJac3.chr19 I 1813 C 0 e mm10.chr1 178737832 104 + 195471971 I e canFam3.chr7 36313890 0 + 80974532 C a score=212507.000000 s hg38.chr1_KI270759v1_alt 142814 65 + 425601 gaattctgttgtttttaacttacccagtccaaggtattttgttatagcagcaggactggactaag s panTro4.chr1 224894330 65 + 228333871 gaattctgttgtttttaacttacccagtccaaggtattttgttatagcagcaggactggactaag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226249827 65 - 229942017 gaattctgttgtttttaacttacccagtccaaggtattttgttatagcagcaggactggactaag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140142351 65 - 143122389 gaattctgttgtttttaacttacccagtccaaggtattttgttatagcagcaggactggactaag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16857373 65 - 229590362 gaattctgttgtgtttaacttacccagtccaaggtattttgttatagcagcaggactagactaag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223618035 65 - 227556264 gaattctgttgtgtttaacttacccagtccaaggtattttgttacagcagcaggacaggactaag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16669005 65 - 220367699 gaattcTGTTGTGTTTAACTTACCCAGTccaaggtattttgttacagcagcaggaCAGGACTAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82468131 65 + 85787240 gaattctgttgtgtttaacttgcccagtccaaggcattttgttacagcagcaggactggactaag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14149221 51 - 49578535 --------------Ttaacttccccagtctaaggtcttttgttatagcagcaggactggactggg i calJac3.chr19 C 0 C 0 s mm10.chr1 178737936 65 + 195471971 gatttctgttctttataaacaacttcatttaaagcattttgctatagcatcaagagcagactaag i mm10.chr1 I 104 C 0 e canFam3.chr7 36313890 0 + 80974532 C a score=836945.000000 s hg38.chr1_KI270759v1_alt 142879 237 + 425601 ataAGGACTAATCTTAGTAGGAAGGAATTAACATGGACCTTGTGAGTTATGGCTGATGCTCAAAAGCCTGGAGGACGCCTTGCAGCTCTTTCCACATGGT--GTGTTCTGGAAACACTGTCTTAACTCCTCTCAGTTTGGTCTGGAGTTTGATA---GTCAT-----------------------G---TAGATTTGGGATTGGCATCACAACCTATAGTCAAAGTGATGAATCCTCTT--GCATA-ACACAACTACTTTGCATTTTAATA s panTro4.chr1 224894395 239 + 228333871 ataAGGACTAATCTTAGTAGGAAGGAATTAACATGGACCTTGTGAGTTATGGCTGATGCTCAAAAGCCTGGAGGACGCCTTGCAGCTCTTTCCACGTGGT--GTGTTCTGGAAACACTGTCTTAACTCCTCTCAGTTTGGTCTGGAGTTTGATA---GTCAT-----------------------G---TAGATTTGGGATTGGCATCACAACCTATAGTCAAAGTGATGAATCCTCTTTTGCATA-ACACAACTACTTTGAATTTTAATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226249892 239 - 229942017 ataAGGACTAATCTTAGTAGGAAGGAATTAACATGGACTTTGTGAGTTATGGCTGATGCTCAAAAGCCTGGAGGATGCCTTGCAGCTCTCTCCACGTGGT--GTGTTCTGGAAACACTGTCTTAACTCCTCTCAGTTTGGTCTAGAGTTTGATA---GTCAT-----------------------G---TAGATTTGGGATTGGCATCACAACCTATAGTCAAAGTGATGAATCCTCTTTTGCATA-ACACAACTACTTTGaattttaata i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140142416 237 - 143122389 ataAGGACTAATCTTAGTAGGAAGGAATTAACATGGATCTTGTGAGTTATGGCTGATGCTCAAAAGCCTGGAGGACGCCTTGCAGCTCTCCCCACATGGC--ATGTTCTGGAAACACTGTCTTGACTC--CTTAGTTTGGTCTGGAGTTCGATA---GTCAT-----------------------G---TAGATTTGGGATTGGCGTCACAACGTATTGTCAAAGTGTTGAATCCTCTTTTGCATA-ACACAACTACTTCAAATTTTAATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16857438 239 - 229590362 GTAAGGACTAATCTTAGTAGGAAGGAATTAACATGGATCTTCTGAGTTATGGCTGACGCTCAAAAGCCTGGAGGACGCCTTGCAGCTCTCTCCATGTGGC--GTGTTCCGGAAACGCCGTCTTGACTCCTCTCAGTTTGGTCTGGAGTTCGATG---GTCAT-----------------------G---TAGATTTGGGATTGGCATCACAACCTAGAAGCAAAGTGTTGAATCCTCTTTTGCATA-ACACAACTACTTTGaattttaata i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223618100 239 - 227556264 TTAAGGACTAATCTTAGTAGGAAGGAATTAACATGGATCTTCTGAGTTATGGCTGACGCTCAAAAGCCTGGAGGACGCCTTGCAGCTCTCTCCATGTGGC--GTGTTCTGGAAACGCCGTCTTGACTCCTCTCAGTTTGGTCTGGAGTTCGATG---GTCAT-----------------------G---TAGATTTGGGATTGGCATCACAACCTAGGGGCAAAGTGTTGAATCCTCTTTTGCATA-ACACAACTACTTTGAATTTTAATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16669070 239 - 220367699 GTAAGGACTAATCTTAGTAGGAAGGAATTAACATGGATCTTCTGAGTTATGGCTGACGCTCAAAAGCCTGGAGGATGCCTTGCAGCTCTCTCCATGTGGC--GTGTTCTGGAAACGCCGTCTTGACTCCTCTCAGTTTGGTCTGGAGTTCGATA---GTCAT-----------------------G---TAGATTTGGGATTGGCATCACAACCTAGAGGCAAAGTGTTGAATCCTCTTTTGCATA-ACACAACtactttgaattttaata i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82468196 239 + 85787240 GTAAGAACTAATCTTAGTAGGAAGGAATTAACATGGATCTTGTGAGTTATGGCTGACGCTCAAAAGCCTGCAGGACGCCTTGCAGCTCTCTCCATGTGGC--GTGTTCTGGAAACGCCGTCTTGACTCCTCTCAGTTTGGTCTGGAGTTCGGTG---GTCAT-----------------------G---TAGATTTGGGATTGGCATCACAACCTAGAGGCAAAGTGTTGAATCCTCTTTTGCATA-ACACGACTACTTTGAATTTTAATA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14149272 260 - 49578535 acaAGGTCTAATCTTAGTAGGAAGTAATTAACACGGATCTTGTGAGTTAAGGCTGATGCTCAGAAGACTGGAGGACACCTGGCAGCTCTCTCCGCATGGC--GAGTGGTGGAAACACTGCTGTGACAC--TTCCATTTGGTCTGGAGTTTAATA---GTCATTAGTCCTGGGAGGAGAATTCCCGG---TAGATCTGGGATTGGCATCACAGCCTATAGTCAAAGTGTTGAATCCTCTTTTGCATA-ACAAAGCTACTTTGaattttaata i calJac3.chr19 C 0 C 0 s mm10.chr1 178738001 233 + 195471971 acaGAGACTGATCATGTTAGGAAGGCATTAAGATAGGTCT--TGAGGTGTGGCTGATGCTCAAAGGACTGGAGGGGATGTTGGAGTTTCTTCCTTAGTGTAAATGTCATAAAAACATC-TCATGACTC---TTAGTTTGGTCTGGAATTTAATA---GCTAT-----------------------ACTTTAGTTATAGGCTTAGAGTCACAACCTAGGGTTAAGGTA--GAGTTTTATATTATATA-G---AGCTACATTGAATTTTAATA i mm10.chr1 C 0 I 115 s canFam3.chr7 36313890 238 + 80974532 ATATGGGCTAATCTTAGAAAGAAGAAGATAGTATGTATCTCTCATGGTATGGCTGATGCTCTAAAGCCTGGAGGAGATGCTGGAGTTCGCTCAGTGTGAA--GCACTAAAAATACGTC-CCAGGGCTCTTCCCAATCAGGTCTGCAGTTCCATAGCTGTTGT-----------------------G---TGGATTCAGAACTGACATCACAACCTAT----AAAGTGTTGAATCCTCTCCTGCCTACACAGAACTACCTTTAATTTTAATA i canFam3.chr7 C 0 C 0 a score=73630.000000 s hg38.chr1_KI270759v1_alt 143116 32 + 425601 ATTTTAATAACTTTGATA-------------------------ACTAAACAT-------------TTACT s panTro4.chr1 224894634 32 + 228333871 ATTTTAATAACTTTGATA-------------------------ACTAAACAT-------------TTACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226250131 31 - 229942017 attttaataattttGGTA-------------------------ACTATCCA--------------TTACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140142653 32 - 143122389 ATTTTAATAATTTTGATA-------------------------ACTATCCAT-------------TTACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16857677 32 - 229590362 atttaaataaatttGATA-------------------------ACTATCCAT-------------TTACT i rheMac3.chr1 C 0 I 36 s macFas5.chr1 223618339 32 - 227556264 ATTTAAATAATTTTGATA-------------------------ACTATCCAT-------------TTACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16669309 32 - 220367699 atttaaataattttgata-------------------------actATCCAT-------------TTact i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82468435 32 + 85787240 ATTTAAATAATTTTCATA-------------------------ACTATCCAT-------------TTACT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14149532 32 - 49578535 actttaataattttaata-------------------------aaCATTCAT-------------TCACT i calJac3.chr19 C 0 C 0 s mm10.chr1 178738349 70 + 195471971 ACTTGGAAAATTGTGATATTTTGTTTTCTtgtaggccaggctgactattcacagtatagccaagactatt i mm10.chr1 I 115 I 1 s canFam3.chr7 36314128 21 + 80974532 AGTTCAT------------------------------------GCTAGCCAT-------------TCACT i canFam3.chr7 C 0 C 0 a score=175380.000000 s hg38.chr1_KI270759v1_alt 143148 66 + 425601 CAAAAATGTATTTCTTGAACAT------------------CTATGGAGTCCAGATATTGGGGTC---------TACTA--GGCTTTGGCTGTCCT s panTro4.chr1 224894666 66 + 228333871 CAAAAATGTATTTCTTGAACAT------------------CTATGGAGTCCAGATATTGGGGTC---------TACTA--GGCTTTGGCTGTCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226250162 66 - 229942017 CAAAAATGTATTTCTTGAACAT------------------CTATGGAGTCCAGATATTGGGGTC---------TACTA--AGCTTTGGCTATCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140142685 66 - 143122389 CAAAAATGTATTTCTTGAACAT------------------CTATGAAGTCCAGATATTGGGGTC---------TACTA--GGCTTTGGCTATCCT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223618371 66 - 227556264 CAAAAATGTATTTCTTGAACAT------------------CTATGGAGTCCAGATATTGGGGTC---------TACTA--GGCTTTGGTTAAGCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16669341 66 - 220367699 caaaaatgtatttcttgaacAT------------------CTATGGAGTCCGGATATTGGGGTC---------TACTA--GGCTTTGGTTaagct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82468467 66 + 85787240 CAAAAATGTATTTCTTGAACAT------------------CTATGGAGTCCAGATATTGGGGTC---------TACTA--GGCTTTGGTTAACCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14149564 66 - 49578535 CAAAAATGTGTTTTTTGAACAT------------------CTATGGAGTCTAGATACTCGGGTC---------TACCA--GGCTTCGGCTACCCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178738420 95 + 195471971 taaaaccccattccctaactttaactcctggtctccctgcctacagatcccaaatattggggttatgggcatgtaccaacacatctggctAGCCT i mm10.chr1 I 1 C 0 s canFam3.chr7 36314149 62 + 80974532 GAAAACTATAT----TGACCAT------------------CTGTCGATTCCAGAGGGTGGGATC---------CGCTA--TGCTTTAGCTAACCT i canFam3.chr7 C 0 I 388 e rheMac3.chr1 16857709 36 - 229590362 I a score=2979289.000000 s hg38.chr1_KI270759v1_alt 143214 1052 + 425601 TGTGATTTTTAAAACCAGAAGCACCCAGAAACTATTAAATCCTTAAAGCAATACAAAATATTCACAGCCATAGCATGCTC--AGTAGAGAACCTCTAATG--CCTGAAACAAGGAGACTGTTTACTTTAGCACGTCAGTACTTGAGGATTTATTCTGTGTTGCGGCTTCTGGCCTGCGAGTTCAGAATAACATGATGTGGATTTGGAA-CCAAAATGAACACAGCAACAGA-CAGTCTATCACGATAATGGGAAGGAGCTGGAGTCTGCAGCTGCCATCGG-CATCAAAGATCTAGCTTTTATTGAGCTCTCTATATCCCGACAGATCCTTGTCGTATGGAAGTGATTTGCGTAGGCTGAGAACAGTGGGGTGAAAAGAA---------------------------------------------------------CCAGGGCATTTCTAAAAACCAGTGAGAGCAATTTACAAGCCTGAGCCAAGAAACAAGCTGGACACACCACAA-AGGAAATGCATTTTCCCAGTAACTTTTTTTTTT--TGGAGGAGGCTTTAGAGGGCTGGCCTGTGAATTGCATTTGTTTATGAATTGTCTAGTAATCACTTGCATTGTCGCTGGATCAGGAGGGGCTGTATTTTCTTCCCACACCTGATTTCCATGATT------CAGTGCACCTCAAGAGCTCCATTTGTGTCACCTTCTCTG-TGGCTGACGTGTGCGTTTCCACTTTGTACTGTTAATCAGTTAAGTGAATATGAGCTGGGAAGTGTGTTCACCAAACACCTGGCTAGCCCGAAGCTCTTTACATTTGACAAAACGGGAGACAGAAATTAGAATGGCTTTTCTATTTTAGTCTAGATTATGGAATTCTGTAATCAAGATTACTTTAAAACCATCATTTGAATGAGGAGGTAAAATAGCCTTGATACTTCACTGCTGGAGAGGAACAATAGACAAACTCAAAAGACAAAAACATGAATTTTAAATGACAGTTTGTCCCAAGGACAT---CGTCATACTGTG---TGCTTTTTACAGTCTGCTTGTTATCTTATGCAAT-------------TATTGCCAATGTGTTTTGCTAATGGATTCATTGC-AAGTGGACTTACCCTACGTGGAAT----------------------GAGGA s panTro4.chr1 224894732 1051 + 228333871 TGTGATTTTTAAAACCAGAAGCACCCAGAAACTATTAAATCCTTAAAGCAATACAAAATATTCACAGCCATAGCATGCTC--AGTAGAGAACCTCTAATG--CCTGAAACAAGGAGACTGTTTACTTTAGCACGTCAGTACTTGAGGATTTATTCTGTGTTGCGGTTTCTGGCCTGCGAGTTCAGAATAACATGATGTGGATTTGGAA-CCAAAATGAACACAGCAACAGA-CAGTCTATCACGATAATGGGAAGGAGCTGGAGTCTGCAGCTGCCATCGG-CATCAAGGATCTAGCTTTTATTGAGCACTCTATATCCCGACAGATCCTTGTCGTATGGAAGTGATTCGCGTAGGCTGAGAACAGTGGGGTGAAAAGAA---------------------------------------------------------CCAGGGCATTTCTAAAAACCAGTGAGAGCAATTTACAAGCCTGAGCCAAGAAACAAGCTGGACACACCACAA-AGGAAATGCATTTTCCCAGTAACTTTTTTTTTT---GGAGGAGGCTTTAGAGGGCTGACCTGTGAATTGCATTTGTTTATGAATTGTCTAGTAATCACTTGCATTGTCGCTGGATCAGGAGGGGCTGTGTTTTCTTCCCACACCTGATTTCCATGATT------CAGTGCACCTCAAGAGCTCCATTTGTGTCACCTTCTCTG-TGGCTGACGTGTGCGTTTCCACTTTGTACTGTTAATCAGTTAAGTGAATATGAGCTGGGAAGTGTGTTCACCAAACACCTGGCTAGCCCGAAGCTCTTTACATTTGACAAAATGGGAGACAGGAATTAGAATGGCTTTTCTATTTTAGTCTAGATTATGGAATTCTGTAATCAAGATTACTTTAAAACCATCATTTGAATGAGGAGGTAAAATAGCCTCGATACTTCACTGCTGGAGAGGAACAACAGACAAACTCAAAAGACAAAGACATGAATTTTAAATGACAGTTTGTCCCAAGGACAT---CATCATACTGTG---TGCTTTTTACAGTCTGCTTGTTATCTTATGCAAT-------------TATTGCCAATGTGTTCTGCTAATGGATTCATTGC-AAGTGGACTTACCCTACGTGGAAT----------------------GAGGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226250228 1049 - 229942017 TGTGATTTTTAAAACCAGAAGCACCCAGAAACTATTAAATCCTTAAAGCAATACAAAATATTCACAGCCATAGCATGCTC--AGTAGAGAACCTCTAATG--CCTGAAACAAGGAGGCTGTTCACTGTAGCACATCAGTACTTGAGGCTTTATTCTGTGTTGTGGCTTCTGGCCTGCGAGTTCAGGATAACATGATGTGGATTTGGAA-CCAAAATGAACACAGCAACAGA-CAGTCTATCATCATAATGGGAAGGAGCTGGAGCCTGCAGCTGCCATCGG-CATCAAGGATCTAGCTTTTATTGAGCTCTCTATATCCCTACAGATCCTTGTCATATGGAAGTGATTCGCATAGGCTGAGAACAGTGGGGTGAAAAGAA---------------------------------------------------------CCAGGGCATTTCTAAAAACCAGTGAGAGCAATTTACAAGCCTGAGCCAAGAAACAAGCTGGACACACCACAA-AGGAAATGCATTTTCCTAGTAACTTTTTTTTTT---GGAGGAGGCTTTAGAGGGCTGTCCTGTGAATTGCATTCGTTTATGAATTGTCTAGTAATCACTTCCATTGTCGCTGGATCAGGAGGGGCTGTGTTTTCTTCCCACACCTGATTTCCATGATT------CAGTGCACCACAAGAGCTCCGTTTTTGTCACCTTCTCTG-TGGCTGACGTGT--GTTTCCACTTTGTACTGTTAATCAGTTAAGTGAATATGAGCTGGGAAGTGTGTTCACCAAACACCTGGCTAGCCCGAAGCTCTTTACATTTGACAAAATGGGAGACAGAAATTAGAATGGCTTTTCTATTTTAGTCTAGATTATGGAATTCTGTAATCAAGATTACTTTAAAACCATCATTTGAATGAGGAGGTAAAATAGTCTTGATACTTCACTGCTGGAGAGGAACAATAGACAAACTCAAAAGACAAAAATATGAATTTTAAATGACAGTTTGTCCCAAGGACAT---CCTCGTACTGTG---TGCTTTTTACAGTCTACTTGTCATCTTATGCAAT-------------TATTGCCAATGTGTTCTGCTAATGGATTCATTGC-AAGTGGATTTACCCTACGTGGAAT----------------------GAGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140142751 1050 - 143122389 TGTGATTTTTAAAACCAGAAGCATCCAGGAACTATTAAATCCTTAAAGCAGTACAAAATATTCACAGCCATAGCATGCTC--AGTAGAGAACCTCTAATG--CCTGAAACAAGGAGACTGTTCACTTTACCACATCTGTACCTGAGGATTTATTCTGTGTTGCGGCTTCTGGCCTGCGAGTTCAGAATAACATCATGTGGATTTGGAA-CCAAAATGAACACAGCAACAGA-CAGTCTATCACAATAATGGGAAGGAGCTGGAGCCTGCAGCTGCCATCGG-CATCAAGGATCTAGCTTTTATTGAGCTCTGTATATCCCCACAGATCCTTGTCATATGGAAGTGATTCGCATAGGCTGAGAACAGTGGGGTGAAAAGAA---------------------------------------------------------CCAGGGCAATTCTAAAAACCAGGGAGAGCAATTCACAAGCCTGAGCCGAGAAACAAGCTGGACACACCACAA-AGGAAACACATTTTCCCAGTAACTTTTCTTTTT--TGGAGGAGGCTTTAGAGGGCTGGCCTGTGAATTGCATTTGTTTATGAATTGTCTAGTAATCACTTCCATTGTCACTGGACCAGGAGGGGCTGTGTTTTCTTCCCACACTTGATTTCCATGATT------CAGTGCACCACAAGAGCTCCGTTTTTGTCACCTTCTCTG-TGGCTGACGTGC--GTTTCCACTTTGTACTGTTAATCAGTTAAGTGAATATGAGCTGGGAAATGTGTTCACCAAACACCTGGCTAGCCTGAAGCTCTTTACATCTGGCAAAATGGGAGACAGAAATTAGAATGGCTTTTCTATCTTAATCTAGATTATGGAATTCTGTAATCAAGATTACTTTAAAACCATCATTTGAACGAGGAGGTAAAATAGCCTTGATACTTCACTGCTGGAGAGGAACAATAGACAAACTCAAAAGACAAAAACATGAATTTTAAATGACAGTTTGTCCCAAGGACAT---CCTCATACTGTG---TGCTTTTTACAGTCTACTTGTTTTCTTATGCAAT-------------TATTGCCAATGTGTTCTGCTAATGGATTCATTGC-AAGCGGACTTACCCTGCGTGGAAT----------------------GAGGA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223618437 1047 - 227556264 TGTGATTTTTAAAACTGGAAGCACTGAGAAACTATTAAATCCTTAAAGCAATATAAAATATTCACAGCCATAGCATGCCC--AGTAGAGAACCTCTAACG--CCTGAAGCAAGGAGACTGTTCACTTCAGCACATCTGTACTTGAGGATTGATTCTGTGTTGCGGCTTCTGGCCTGGGAGTTCAGAATAACATCATGTGGATTTGGAA-CCAAAATGAACACAGCAACGGA-CAGTCTATCACGATAATGGGAAGGAGCTGGAGCCTGCAGCTGCCATCGG-CATCAAAGATGTAGCTTTTACTGAGCTCTCTATATCCCCACAGATCCTTGTCATATGCAAGTGATTCGTGTAGGCTGAGAACAGTGGGGTGAAAAGAT---------------------------------------------------------CCAGGGCATTTCTAAAAACCAGTGAGAGCAGTATACAAGCCTAAGCCAAGAAACAAGCTGGACACACCACAA-AGGAAATGCATTTTCTCAGTAACAGTTTTTTT----GGAGGAGGCTTTAGAGGGCTGGCCTGTGCATTGCATTTGTTTATGAATTGTCCAGTAATCACTTCCACTGTCGCTGGATCAGGAGGGGCTGTGTTTTCTCCCCACACCTGATTCCCATGATC------CAGTGCACCGCAAGAACTCCGTTTCTGTCACCTTCTCGG-TGGCTGACGTGC--GCTTCCAC-TTGTACAGTTAATCAGTTAAGTGAATATAAGCTGGGAAGTGTGTTCACCAAACACCTGGCTAGCCCGAAGCTCTTTACATTTGACAAAACGGGAGACAGAAATTAGAATGGCTTTTCCATTTTAGTCTAGATTATGGAATTCTGTAATCAAGATGACTTTAAAACCATCATTTGAACGAGGAGGTAAAATAGCCTTGATCCTTCAGTGCTGGAGAGGAACGATAGACAAACGCAAAAGACAAAAACATGAATTTTAAATGACAGTTTGTCCCAAGGACAT---CCTCATACTATG---TGCTGTTTACAGTTGACTTGTTATCTTATACAGT-------------TATTGCCAATGTGTTCTGCTAATGGATTCATTGC-AAGTGAACTTACCCTACGTGGCAT----------------------GAGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16669407 1048 - 220367699 tgtgatttttaaaaccgGAAGCACTGAGAAACTATTAAATCCTTAAAGCAATACAAAATATTCACAGCCATAGCATGCCC--AGTAGAGAACCTCTAATG--CCTGAAGCAAGGAGACTGTTCACTTCAGCACATCTGTACTTGAGGATTGATTCTGTGTTGCGGCTTCTGGCCTGCGAGTTCAGAATAACATCATGTGGATTTGGAA-CCAAAATGAACACAGCAACGGA-CAGTCTATCACGATAATGGGAAGGAGCTGGAGCCTGCAGCTGCCATCGG-CATCAAAGATGTAGCTTTTACTGAGCTCTCTATATCCCCACAGATCCTTGTCATATGCAAGTGATTCGTGTAGGCTGAGAACAGGGGGGTGAAAAGAC---------------------------------------------------------CCAGGGCATTTCTAAAAACCAGTGAGAGCAGTATACAAGCCTGAGCCAAGAAACAAGCTGGACACACCACAA-AGGAAATGCATTTTCTCAGTAACAGttttttt----GGAGGAGGCTTTAGAGGGCTGGCCTGTGCATTGCATTTGTTTATGAATTGTCCAGTAATCACTTCCATTGTCACTGGATCAGGAGGGGCTGTGTTTTCTCCCCACACCTGATTCCCATGATC------CAGTGCACCGCAAGAACTCCGTTTCTGTCACCTTCTCGG-TGGCTGACGTGC--GCTTCCACTTTGTACAGTTAATCAGTTAAGTGAATATAAGCTGGGAAGTGTGTTCACCAAACACCTGGCTAGCCCGAAGCTCTTTACATTTGACAAAACGGGAGACAGAAATTAGAATGGCTTTTCCATTTTAGTCTAGATTATGGAATTCTGTAATCAAGATGACTTTAAAACCATCATTTGAACGAGGAGGTAAAATAGCCTTGATCCTTCAGTGCTGGAGAGGAACGATAGACAAACgcaaaagacaaaaacatgaattttaaatgaCAGTTTGTCCCAAGGACAT---CCTCATACTATG---TGCTGTTTACAGTTGACTTGTTATCTTATACAGT-------------TATTGCCAATGTGTTCTGCTAATGGATTCATTGC-AAGTGAACTTACCCTACGTGGCAT----------------------GAGGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82468533 1046 + 85787240 TGTGATTTTTAAAACCAGAAGCACCCAGAAACTATGAAACCCTTAAAGCAATACAAAATATTCACAGCCATAGCATGCCC--AGTAGAGAACCTCTAACG--CCTGAAGCAAGGAGACTGTTCACTTCAGCACATCTGTACTTGAGGATTGATTCTGTGTTGCGGCTTCTGGCCTGCGAGTTCAGAATAACATCGTGTGGATTTGGAA-CCAAAATGAACACAGCAACAGA-CAGTCTATCACGATAACGGGAAGGAGCTGGAGCCTGCAGCTGCCATCGG-CATCAAAGATCTAGCTTTTACTGAGCTCTCTATATCCCCCCAGATCCTTGTCATATGCAAGTGATTCGTGTAGGCAGAGAACAGTGGGGTGAAGAGAC---------------------------------------------------------CCAGGGCATTTCTGAAAACCAGTGAGAGCAGTGTACAAGCCTGAGCCAAGAAACAAGCTGGACACACGACAA-AGGAAATGCATTTTCTCAGTAACTGTTTTTTT----GGAGGAGGCTTTAGAGGGCTGGCCTGTGCATTGCATTTGTTTATGAATTGTCCAGTAATCACTTCCATTGTCGCTGGATCAGGAGGGGCTGTGTTTTCTCCCCACACCTGATTCCCATGGTC------CAGTGCACCGCAAGAGCTCCGTTTCTGTCACCTTCTCGG-TGGCTGACGTGC--GCTTCCACTTTGTACAGTTAATCAGTTAAGTGAATATAAGCTGGGAAGTGTGTTCACCAAACACCTGGCTAGCCCGAAGCTCTTTACATTTGACAAAACGGGAGATGGGAATTAGAATGGCTTTTCCATTTTAGTCTAGATTATGGAATTCTG-AATCAAGATGACTTTAAAACCCTCATTTGAACGAGGAGGTAAAATAGCCTTGATCCTTCAGTGCTGGAGAGGAACGACAGACAAACGCAAAAGACAAAAGCATGAATTTTAAATGACGGTTTGTCCC-AGGACAT---CCTCATACTATG---TGCTGTTTACAGTCGACTTGTTATCTTACGCAGT-------------TGTTGCCGACGTGTTCTGCTCATGGATGCATTGC-AAGTGCACTTACCCTGCGTGGCAT----------------------GAGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14149630 1046 - 49578535 TGTGATTTTTAAAACCAGAAGCACCCAGAAACTATCAGATCCTTAAAGCAATACAAAATATTCGCAGCCATAGCATTCTC--AGTAGAGACCCTCTAACG--CCTGAAACAAGGAGACTGTTCCCGTCAGCACATCTGGACTTGAGGATTTTTTCTGTGTTGCAGCTTTTGGCCTGCGAGTTCAGAATAACATCGTTTAGATTTTGAA-CCAAAATGAACACAGCCACAGA-CAGTCGATCACGCTAATGGGAAGGAGCTGGAGCCCGCAGCTGC-------CATCAAGGCTCTCGCTTTCACTGAGCTCTGCACAGCCCCACAGATCCTTGTCATATGGAAGTGATTCGTGTAGGCTGAGAACAGTGGAGTGAAAAGAA---------------------------------------------------------CCAGGACGTTTCTGAAAACCAGTGAGATTAATTTACAAGCCTGAGCCGAGAAACAAGCTGGACACACCACAA-AGGAAATGCGTTTTCCCAGTAACTTTTTTTCTTTTTGGAGGAAGTTTGAGAGGACTTGCCTTTGAATTGCGTTTGTTTATGAGGTGTCTCGTAATCACTTCCGTTGTCGCTGGATCAGGAGGGGCTATGCTTTCTTCCCAGACCAGATTTCCGTGATT------CAGTGCGCTTCAGGAGCTGCATTTCTGTCACCTTCTCTG-TGGCTGACGTGC--GCTTCCACTTTGTACTGCTAATCGACTAAGTCCATATGAGCTGGGAAGTGTGTTCACAAAACACCTGGCTCGCCTGAAGCTCTTTACATTTGACAAAATGGGAGACAGAAATTATAATGGCGTTTCCACTTGAGTCTACATTATGGGATTCTGTAATCAAGATGACTTTAAAACCGTCATCTGAATGAGGAGGTAAAACAGCCTTGATAGTTCTCTGCCGGACAGGAACAACAGACAAACACAAAGGACAAAAACGTGCATTTTAAATGACAGCTCGTCCCAAGGACAT---CCTCGTACTAGA---TGCTTTTTACAGTCTGATTATTCTCATATGCAGT-------------TATTGCCAGTGTTTTTTGCTAATGGATTCGTTGC-AAGTGGATTTGCCCTGCATGGAAT----------------------GAGGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178738515 1062 + 195471971 CGTGATGCTTAAAGTCTT-CGCATCCAGTAGCCATTACAAGCTT-GGGCAGTAGAAAATGT----AACCAGGGCATTCCTGGAGAAGAGAATATGCCAGGACCCCAAAACAAAAA------TCTACTGAGCACATCTGAACCACGGGGCTGATTC--TGTTGCA----TTGGCCCATAAGGCCAGAGCAGCAGCATGTGG---------TCTGAAGGAGCATAGAAGCAGA-CACTCTGCCATGCTACCAGAAAGGGGCCAGCATCTGCAGCTGCCATCAGCCATGAGGGACCGCACTCGGGATGAGTTCT--AAATCCCTGCAGACTGATGTCACACAGAAGCGATTTACACAGGCTGAGGACAGCAGGGTGGAAAAAAGGGGAAAACGcaaaaaaaaaaaaaaaacaaccaaccaaccaacaaacaaacaaacaCCCCAGACGTTTTTAAAAACCAAGGAGAGCTATCTACAAGGCC------AGAGGCTAGCTGGGCATACCCCAACAGGAAACACATTTCCCCAATAATCTTGTTGCAT------GGGGTCTTTGGATGGCTTACCTTTGAATCGCTTCTGTTTATGGAGTCTC-AGCAATGCCTTTCACTGTCAGGAAACC------------TTTCTCTTTTCAGACCTAGTCCTCATGGCTAGCTAGCTCTGGAGCTCTAAGGCCCCAGATTAATCGCCTCCTCTC-TGGCTGACTTAC--ACTTCCATCTTGTGCTGTCCAGCAGAAGAATTACTGGGGACAAGGTCACGGATGCACTCAGCA-TTGGCTAGTCCAGAGCCCTTTACACTGGACGTAAAGGGAGGCAGAAATTATAA---CTTTCCCATCTCAGGCTGGATTATGGAATTTTGTAGTGAAGATACTGCTAAAACCTTTGGTTG-ATGAGGAGATAAAATAGCCTTGATATGTGTCTGCTAGAGGG--------------------------AAACATACATTTCCAGTGACAGTTTGCATGGAGGATGTTCACCTCCTATAACA---TGC-ATCTATCGTTCACGCGTTATCTTATGCACT-------------CACTGTTGGTGCTTGCAGCTAATGGGTTCATCGCAAAGTGGGGTTACCGTACATGGAATCCGTTTTTATTCTCAAATGTAGAAAAG i mm10.chr1 C 0 C 0 s canFam3.chr7 36314599 1046 + 80974532 TGTGATTTTTAAAACCTGAAGCACCCGGCAGCTGTTGAATCCTTCCAACAATACAAAATATTCATAGCCATGGCATGATGTACATAAAGAACCCTCACTG--CCTGAAACAAGGAG-CTGCTCACTTTGGCATATCTG-ACTTGAGGCTCGATCCTGTGCTGCTGCTTCTAGCCTGCAAGTTCAGAATAGCGTTGTGCAGATTTTGAACCCAAAATGAGTGCAGCTACAGACCAGCCCATCATAATAC--------AGTCTGAGCCTGCCCCTGCCATGTG-CACTGAGGGTCTTGCTGGCACTGAGCTCT--GCATCCCCACAAATCGCTGTCATATGGAAGTGATTC-------------------GGGTGAAAAAA----------------------------------------------------------CCAAGATGTTTCTAAAAATTAGGGAGAGTAGCCTGCAAGCCCGAGTCAGGAACTCTGCTGGACGTGCCACAA-AGGAAATGCATTTTCCCAATAACTCTTTTT------GGAGGCGGCTTTAGATAACTTGCCTTTGAATTGCATCTGTTTATGAGATGTTGAGTAATCACTTCCGTCGTACCTGGACCAGGAGGGGTTGTGTTTTCCTCTCAGACCTAATTCCTAAGATT------CAGTGCGCTGTGAGAGCTCCATGTTTACAGCCCCCTCTCTTGGCTGTGGGAT--CTTTCTGCTGTGTACTGTTAATTCGATATGTTTCTATGAGCTGGGAAGGGCATCCAGTAAACACCTGACTAGCCTCAAGCTCTTTATACTTGACAAAATGGGAGACA--AATTATAATGATTTTCCCATTTTTGACTGGGTGGTGGAATTCTGTAATCAAGGCTACTTTAAAACCCTTGGTTGAATAAAAAGGTAAAATATCCCTGACGCTTCACTATTAGGAGGAAAGTGTATCC---CACAAAAGACAAAAACGTAAATTTCAAACATCACTTTGTCCCAAGGACTC---TCACCTACCATGAGATGCTTTTGACAGTCTActtgatatcttccttgatatcttccACGGGCTACTACCAAAGCTTTGTGCTAATGGATTCACCAC-AAGGGGATTTACCATATGTGGAAC--CTATCTGTTCTCATGT----GAGCA i canFam3.chr7 I 388 I 225 e rheMac3.chr1 16857709 36 - 229590362 I a score=623798.000000 s hg38.chr1_KI270759v1_alt 144266 251 + 425601 ATGTCCATATGTGGTAGATGTGTTATTTATTGATGAGGAGAGGAAAGTGGATCAATGTGGTCTTTAGATGTGCGTGCTTTGCCTTGGGAAGCACCAGCATTGTCGTCTGAACTACAATTGGTGTGTATCTGGGTGGAATGTGGTACCCGTGGTGAGTTTGCT-TGTTCTCTTTCCGTTGGCCCACTTGCAGCAACCAACTGTTGCCTGGACTCGGTAT-TTTGGG-G-GCCATTTTCTCTTACTTTTATCTGTTG s panTro4.chr1 224895783 251 + 228333871 ATGTCCATATGTGGTAGATGTGTTATTTATTGATGAGGAGAGGAAAGTGGATCAATGTGGTCTTTAGATGTGCATGCTTTGCCTTGGGAAGCACCAGTATTGTCGTCTGAACTACAATTGGTGTGTATCTGGGCGGAATGTGGTACCCGTGGTGAGTTTGCT-TGTTCTCTTTCCATTGACCCACTTGCAGCAACCAACTGTTGCCTGGACTCAGTAT-TTTGGG-G-GCCATTTTCTCTTACTTTTATCTGTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226251277 251 - 229942017 ATGTCCATATGGGGTAGATGTGTTATTTATTGATGAGGAGAGAAAAGTGGATCAGTGTGGTCTTTAGATGTGTGTGCTTTGCCTTGGGAAGCACCAGCATTGTCGTCTGAACTACAATTGGTGTGTATCTGGGCGGAATGTGGTACCCGTGGTGAGTTTGCT-TGTTCTCCTTCCATTGACCCACTGGCAGCAATCAGCTGTTGCCTGGACTTGGTAT-TTTGGG-G-GCCGTTTCCTCTTATTTTTGTCTGTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140143801 247 - 143122389 ATGTCCATACGTGGTAGATGTGTTATTTATTGATGAGGAGAGAAAAGTGGATCAATGTGGTCTTTAGATGTGCGTGCTTTGCCTTGGGAAGCACCAGCATTGTCGTCTGAAATACAATTGGTGTGTATCTGGGCAGAATGTGGTACCCGTGGTGAGTTTGCT-TGTTCTCATTCCATTGACCCACTTGCAGCAATCAACTGTTGCCTCGACTTGGTGT-TTTGGG-G-GCCGT----TCTTACTTTTGTCTGTTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223619484 251 - 227556264 ATGTCCATACGTGGTAGGTGTGTTATTTATTGATGAGGAGAGAAGAGTGGAACAACGTGGTCTTTAGATGTGCGTGCTTTGCCTTGGGAAGCACCAGCATTGACGTCTAAAATACAGTTGGGGTGTACGTGGGCGGAACGTGGTTCACGTGGTGAGTTTGCT-TGTTCTCATTCTGTTGACCCACTTGGAGCAATCAACTGTTGCCTCGACTTGGTAT-TTTGGG-G-GCCATTTTCTCTTACTTTTGtctgttg i macFas5.chr1 C 0 I 357 s papAnu2.chr1 16670455 251 - 220367699 ATGTCCATACGTGGTAGATGTGTTATTTATTGATGAGGAGAGAAGAGTGGAACAACGTGGTCTTTAGATGTGCGTGCTTTGCCTTGGGAAGCACCAGCATTGACGTCTAAAATACAATTGGGGTGTACGTGGGCGGAACGTGGTTCACGTGGTGAGTTTGCT-TGTTCTCATTCTGTTGACCCACTTGGAGCAATCAACTGTTGCCTCAACTTGGTAT-TTTGGG-G-GCCATTTTCTCTTACTTTTGTCTGTTG i papAnu2.chr1 C 0 I 361 s chlSab2.chr25 82469579 251 + 85787240 ATGTCCATACGTGGTAGATGTGTTATTTATTGATGAGGAGAGAAGAGTGGAACAATGTGGTCTTTAGATGCGCGTGCTTTGCCTTGGGAAGCACCAGCACTGCCGTCTAAAATACAGTTGGGGTGTACCTGGGCGGAACGTGGTTCACGTGGTGAGTTTGCT-TGTGCTCATTCCGTTGACCCACTTGGAGCAATCGACTGTTGCCTCGACTTGGTAT-TTTGGG-G-GCCGTTTTTTCTTACTTTTGtctgttg i chlSab2.chr25 C 0 I 361 s calJac3.chr19 14150676 252 - 49578535 ATGTCCATACGTGGTAGATGTGTTATTTATGGATGAGGAGAGAA-AGTGGATCAAAGTGGTCTTTAGATGTGTGTGTTTTGCCGTGGGAAGCACCAACCTTACGGTCTGAAGTGCATTTGGTGTCTATCTGGGCAGAACATGGTGCACATGGTGAGTCTGCTCCACGCTCACGCCACTCAACCACGTGCCACCATCCACTGTTGCCCCTGCTTGGTAT-TCGAGG-GCGCCGTTCTCTCTCACTTTTGTCTGTTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178739577 225 + 195471971 ATGTCTGGCTACCATGGTTGTGTTG-TTGCTGATGA-GAGGGAGAAATATACCAGGATGGTC-CAATGGGTATGTGTTTTGCCTTGCGCAACACCAACAGTACAGTACAAAATACAGCTGGCATGTGTCTGGATAGAGTGTGGCAGAC---------------TTCTCTCTTTCTGCCGGACTGCTGCGGGCCGTCAGTTGCTCCCTGCAGTTGGTAT-TTTGGGTG-GTCATTTTCTCTC----------GTTG i mm10.chr1 C 0 I 1 s canFam3.chr7 36315870 226 + 80974532 ATGTCCCTACGTGATGGATGTACTCTTTATTGATGAGGACTGCAGAATTTGTCAGTGTGG-----------------TTCGCCTTGGGCTGTACCAGCATTGTACTATGAATTGCAGTCGGGG-ATGTCTAGGCACAGTGTGGCA--------GATTTGCCT-TGCTTTCAGGCCAGTGGACCACGTGCACAAAGCAACTGCTTTGTCTAGTTAGTATATTTGGT-G-ACCATTCGCTTCCATTCTTCTCTACTG i canFam3.chr7 I 225 C 0 e rheMac3.chr1 16857709 36 - 229590362 I a score=845.000000 s hg38.chr1_KI270759v1_alt 144517 1 + 425601 G s panTro4.chr1 224896034 1 + 228333871 G i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226251528 1 - 229942017 G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140144048 1 - 143122389 G i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14150928 1 - 49578535 G i calJac3.chr19 C 0 C 0 s canFam3.chr7 36316096 1 + 80974532 A i canFam3.chr7 C 0 C 0 e mm10.chr1 178739802 1 + 195471971 I e rheMac3.chr1 16857709 36 - 229590362 I e chlSab2.chr25 82469830 361 + 85787240 I e papAnu2.chr1 16670706 361 - 220367699 I e macFas5.chr1 223619735 357 - 227556264 I a score=168134.000000 s hg38.chr1_KI270759v1_alt 144518 41 + 425601 CCTTGTGGTTCCATCTGTAGGTTGCTCTCTCCGTCTAGCTT s panTro4.chr1 224896035 41 + 228333871 CCTTGTGGTTCCATCTGTAGGTTGCTCTCTCCGTCTAGCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226251529 41 - 229942017 CCTTGTGGTTCCATCTGTAGATTGCTCTCTCCGTCTAGCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140144049 41 - 143122389 CCTTGTGGTTCCATCTGGAGGTTGCTCTCTCCATCTAGCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16857745 41 - 229590362 CCTTGTGGATCCATCTGTAGGTTGCTCTCTCTGTCTAGCTT i rheMac3.chr1 I 36 C 0 s macFas5.chr1 223620092 41 - 227556264 CCTTGTGGATCCATCTGTAGGTTGCTCTCTCTGTCTAGCTT i macFas5.chr1 I 357 C 0 s papAnu2.chr1 16671067 41 - 220367699 CCTTGTGGATCCATCTGTAGGTTGCTCTCTCTGTCTAGCTT i papAnu2.chr1 I 361 C 0 s chlSab2.chr25 82470191 41 + 85787240 CCTTGTGGTTCCATTTGTAGCTTGCTCTCTCTGTCTAGCTT i chlSab2.chr25 I 361 C 0 s calJac3.chr19 14150929 39 - 49578535 --TCTCGGGTCCATCTGTAGGTTGCTCTCTCTGTCCAGCTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178739803 41 + 195471971 TTTCATGGTTCCATCTGTAAGTTGCTTTCCCTAGCTAGCTT i mm10.chr1 I 1 I 1422 s canFam3.chr7 36316097 41 + 80974532 ATTTATGATTTCATCTGTAAGTTGCTTTCCCTGTCTAGCTT i canFam3.chr7 C 0 C 0 a score=301979.000000 s hg38.chr1_KI270759v1_alt 144559 95 + 425601 GGAAACAACATAA-TGATTCCTTCCGAATCACTGGA-TTCACAGGGTTGA-GGGACTTGCCTGCCACTGA------CATTCGTTGACTGGGATTAGAATTTGAA s panTro4.chr1 224896076 95 + 228333871 GGAAACAACATAA-TGATTCCTTCCAAATCACTGGA-TTCACAGGGTTGA-GGGACTTGCCTGCCACTGA------CATTCATTGACTGGGATTAGAATTTGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226251570 95 - 229942017 GGAAACAACATAA-TGATTCCTTCCAAATCACTGGA-TTCACAGGGTTGA-GGGACTTGCCTGCCACTGA------CATTCATTGACTGGGATTAGAATTTGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140144090 95 - 143122389 GGAAACAACATAA-TGATTCCTTCCAAATCACTGGA-TTCACAGGGTTGA-GGGACTTGCCTGCCACTGA------CATTCATTGACTGGGATTAGAATTTGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16857786 94 - 229590362 GGAAACAACATAA-TGACGCCTTCCGAATCGCTGGA-TTCACAGGGCTGA-GGGACTTG-CTGCCCCTGA------CATTCATTGACTGGGATTCGAATTTGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223620133 94 - 227556264 GGAAACAACATAA-TGACGCCTTCCGAATCGCTGGA-TTCACAGGGCTGA-GGGACTTG-CTGCCCCTGA------CATTCATTGACTGGGATTCGAATTTGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16671108 95 - 220367699 GGAAACAACATAA-TGACGCCTTCCGAATCGCTGGA-TTCACAGGGCTGA-GGGACTTGCCTGCCCCTGA------CATTCATTGACTGGGATTCGAATTTGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82470232 95 + 85787240 GGAAACAACATAA-TGACTCCTTCCGAATCGCTGGA-TTCACAGGGCTGA-GGGACTTGCCTGCCCCTGA------CATTCATTGACTGGGATTCGAATTTGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14150968 101 - 49578535 GGAAACAGCACGA-TGACTCCTTCCAAATCACTGGA-TTCACAGGCTTGA-GGGATTTGCCGTCATCTGAATGAGGCTTTGACTGACTAGGATTAGAATTTGAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36316138 98 + 80974532 GGAAGCAATGGGCTTGGCTCCTTCCAAATCCCTTGAGTTTATGAGGCTGACAGAACTTGCTTGCCACTCA------TGTTAGTAGAATGGGGTTAGAATTTGAA i canFam3.chr7 C 0 I 237 e mm10.chr1 178739844 1422 + 195471971 I a score=1296919.000000 s hg38.chr1_KI270759v1_alt 144654 434 + 425601 AAGATTTTCGCTGTTGCCTCAGGTGTTCTGAAAGGTGGAATGAATCATTTCCACTCAGTTTTAATGCTAGAGGGAGAAAGGAGTCATGTTAATTAGATGGGAAAGATGATCTAA-TCCTTTCTCAAAGA-GCCTTTCTATAAGGTTTAGGGTACTGTCCAGCCAGCCT-GCGGCTGCGTGAGACTAATGATGGGTACTGGGCTGTTGTTCCATTTCTGCTA----CCATTCATTGTTGGTGCCTTTGGT-----AAATAATTCCATTTCATTGTGACTTCATCTTCTCATTGGGAAAATGA---GAC----TGGTGATGTTGCGCCTCTTGGGTTAGGCGTATTCTGTGGTAGGATTTAGAGTCAAAAGTGTTTTTTATACTAAAAGAC-------------------------------------------------------------------------------------AC----------------------------------------------------Tatggcacatcttcgtaggacattagcttttctttgaagatctggtggtggggggaagggga s panTro4.chr1 224896171 434 + 228333871 AAGATTTTCGCTGTTGCCTCAGGTGTTCTGAAAGGTGGAATGAATCATTTCCACTCAGTTTTAATGCTAGAGGGAGAAAGGAGTCACGTTAATTAGATGGGAAAGATGATCTAA-TCCTTTCTCAAAGA-GCCTTTCTATAAGGTTTAGGGTACTGTCCAGCCAGCCT-GCGGCTGTGTGAGACTAATGATGGGTActgggctgttgttccatttctgcta----ccattcattgttggtgcctttggt-----aaataattccatttcattgtggcttcatcttctcattgggaaaatga---gAC----TGGTGATGTTGCGCCTCTTGGGTTAGGCGTATTCTGTGGTAGGATTTAGAGTCAAAAGTGTTTTTTATACTAAAAGAC-------------------------------------------------------------------------------------AC----------------------------------------------------Tatggcacatcttcgtaggacattagcttttctttgaagatctggtggtggggggaagggga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226251665 434 - 229942017 AAGATTTTCACTGTTGCCTCAGGTGTTCTCAAAGGTGGAATGAATCATTTCCACTCAGTTTTAATGCTAGAGGGAGAAAGGAGTCATGTTAATTAGATGGGAAGGATGACCTAA-TCTTTTCTGAAAGA-GCCTTTCCATAAGGTTTAGGGTACTGTCCAGCAGGCCT-GCGGCTGTGTGAGACTAATGCTGGGTACTGGGCTGTTGTTCCATTTCTGCTA----CCATTCATGGTTGGTGCCTTTGGT-----AAATAATTACATTTCATTGTGACTTCCTCTTCTCATTGGGAAAATGA---GAC----TGGTGATGTTGCGCCTCTGGGGTTAGGCATATTCTGCGGTAGGATTTAGAGTCAAAAGTGTTTTTTAAACTAAAAGAC-------------------------------------------------------------------------------------AC----------------------------------------------------Tatggcacatcttcataggacattagcttttctttgaagatctggtggtggggggaagggga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140144185 434 - 143122389 AAGATTTTCACTGTTGCCTCAGGTGTTCTCAAAGGTGGAATGAATCATTTCCAGTCAGTTTTAATGCTAGAGGGAGAAAGGAGTCATGTTAATTAGATGGGAAAGATGATCTAA-TCTTTTCTCAAAGA-GCCTTTCTATAAGGTTTACGGTACTGTCCAGCGGGCCT-GCGGCTGTGTGAGACTAATGATGGGTACTGGGCTCTTGTTCCATTTCTGCTA----CCATTCACTGTTGGTGCCTTTGGT-----AAATAATTCCATTTCGTTGTGACTTCATCTTCTCATTGGGAAAATGA---GAC----TGGTGATGTTGCGCCTCTTGGGTTGGGCGTATTCTGTGGTAGGATTTAGAGTCAGAAGTGTTTTTTATACTAAAAGAC-------------------------------------------------------------------------------------AC----------------------------------------------------Tatggcacatcttcgtaggacattagcttttctttgaagatctagtggtggggggacgggga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16857880 516 - 229590362 AAGATTTTCACTGTTGCCTCAGGTGTTCTCAAAGGTGGAATGAATCATTTCCACTCAGTTTTAATGCTAGAGGGAGAAAAGAGTCGTGTTAATTAGATGAGAAAGATGATATAA-TCTTTTCTCAAAGA-TCCTTTCTGT-AGGTTGAGGGTACTGTCCAGCAGGCCT-GAGACTGTGTCAGAATAATGATGGGTActgggctgctgttccgtttctgctacgttcaattcactgttggtgcctttggt-----aaataattccttttcattgtgacttcatcttctcattggaaaaatga---gat----gggtgATGTTGCACCTCTTGGGTTAGTTGTATTCTGTGGTAGGGTTTAGAGTCAAAAGTGTTTTTTATACTAAAAGACGAAAGGGATCTTATCCGATTG------------------GGGCACCT-------------------GTACCTCCAGGAATATAGAGC-------------------CATGTGCCAGGTCCTGCAAGAAACTTTCCa--atatggcacatcttcctaggacattagtttttctttgaaaatttggtggtgggggacagggga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223620227 516 - 227556264 AAGATTTTCACTGTTGCCTCAGGTGTTCTCAAAGGTGGAATGAATCATTTCCACTCAGTTTTAATGCTAGAGGGAGAAAAGAGTCGTGTTAATTAGATGAGAAAGATGATCTAA-TCTTTTCTCAAAGA-TCCTTTCTGT-AGGTTGAGGGTACTGTCTAGCAGGCCT-GAGACTGTGTCAGAATAATGATGGGTActgggctgctgttccgtttctgctacgttcaattcactgttggtgcctttggt-----aaataattccttttcattgtgacttcatcttctcattggaaaaatga---gat----gggtgatgttgcacctcttGGGTTAGTTGTATTCTGTGGTAGGGTTTAGAGTCAAAAGTGTTTTTTATACTAAAAGACGAAAGGGATCTTATCCGATTG------------------GGGCACCT-------------------GTACCTCCAGGAATATAGAGC-------------------CATGTGCCAGGTCCTGCAAGAAACTTTCCa--atatggcacatcttcctaggacattagtttttctttgaaaatttggtggtgggggacagggga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16671203 515 - 220367699 AAGATTTTCACTGTTGCCTCAGGTGTTCTCAAAGGTGGAATGAATTATTTCCACTCAGTTTTAATGCTAGACGGAGAAAAGAGTCGTGTTAATTAGATGCGAAAGATGATCTAA-TCTTTTCTCAAAGA-TCCTTTCTGT-AGGTTGAGGGTGGTGTCCAGCAGG-CT-GCGACTGTGTCAGAATAATGATGGGTACTGGGCTGCTGTTCCGTTTCTCCTACGTTCGATTCACTGTTGGTGCCTTTGGT-----AAATAATTCCTTTTCATTGTGACTTTGTCTTCTCATTGGAAAAATGA---GAC----GGGTGATGTTGCACCTCTTGGGTTAGGTGTATTCTGTGGTAGGGTTTAGAGTCAAAAGTGTTTTTTATACTAAAAGACGAAAGGGATCTTATCCGATTG------------------GGACACCT-------------------GTACCTCCAGGAATATAGAGC-------------------CATGTGCCAGGTCCTGCAAGAAACTTTCCA--ATATGGCACATCTTCCTAGGACAttagtttttctttgaaaatttggtGGTGGGGGACAGGGGA i papAnu2.chr1 C 0 I 1508 s chlSab2.chr25 82470327 516 + 85787240 AAGATTTTCACTGTTGCCTCAGGTGTTCTCAAAGGTGGAATGAATCATTTCCACTCAGTTTTAATGCTAGAGGGAGAAAGGAGTTGTGTTAATTAGATGGGAAAGATGATCTAA-TCTTCTCTCAAAGA-TCCTTTCTGT-AGGTTGAGGGTACTGTCCAGCAGGCCT-GCGACCGTGTCAGAATAATGATGGGTActgggctgctgttccgtttctgctacgttcgattcaccattggtgcctttggt-----aaataattccttttcattgtgacttcatcttctcattggaaaaatga---gac----gggtgatgttgcacctcttgggttaggtgtattCTGTGGTAGGGTTTAGAGTCAAAAGTGTTTTTTATACCAAAAGACGAAAGGGATCTTATCCGATTG------------------GGGCACCT--------------------------------------GTACCTCCAGGAATATAGAGCCATGTGCCAGGTCCTGCAAGAAACTTTCCa--atatggcacatcttcctagggcattagtttttctttgaaaatttggtggtgggggacagggga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14151069 486 - 49578535 AAGATTTTCACGGTTGCCTCAGGTGTGCTACAAGGTGGAGTGAATCATTTCCACTCAGTTTTAATGCTGGAGGGAGAAAGGAGTCATGATAATGAGATGGGAAAGAGAAGCTCG-TCTTTTCTCAAAGA-TCCTTTCCATAAAGTTTAGGGTACTGTCCAGCGGGCCT-GCGGCTGTGTGAGGATAATGATGGGTCTCGGGCTGTGGTTTC--------------------------GGTGCCTTTGGC-----AAATAATTCCATTTCTCTGTGACTTCATC------TGGGGAAAATGA---GACATCTGGGTGATGTCGTACCTCTTGGGTTAGGTGGATTCTGTGATAGGATTTAGAGTAAAAAGTGTGTTTTA---TAGAAGACTAAAGGGATcttctcagattg------------------gggtacctgcacctccaggaatagagagca----------------gt----------------------gtgccaggtgctgcacgcagctttcca--gtatgtcacctctacctaggacattgatttttccttgaagatttggtggtggggggaagggga i calJac3.chr19 C 0 C 0 s canFam3.chr7 36316473 505 + 80974532 AAGATTTTCACTATTGCTTCAGGTGTTCTGAAAGGGGAAATGAGTCATTTTCTCTCTGATGCAATGCTAATGGGAGAAAGGAGTCATGTTAATTATCTGGAAGGTGTAATCTAATTTTTTTCTCAAAGATTTTTTTCAATAAAATGTAGGGCACTGTCCAGTGGGCCCAGTGGCTATGTGAGAACAATGATGGATGGCAAATTATCATTTCATCTCTACTA----CTAGCTGATTTTGGTGCCTTTGGTTTAAAAAAAAAAGTCACTTCCCTGTGACTTAATCTT-TTATTGTGAAAATGAGGTGAC----CAGTGATGTTGTATCTCTTAGG-TATGTGTAGTCTGCAGTAGGATTTAGAATGAATGAGGGTT----------AATACTGAAGGGATCTTTTCAGATTGGGGTACCTGAATCCCATT----------------------------------------------GT-------------------CATGGGCCGGGGCCACCCGgaagccactgggtatatagcacatcttcctggggcacgagtttttcttaaagacttgaggggtgggggggaccagt i canFam3.chr7 I 237 C 0 e mm10.chr1 178739844 1422 + 195471971 I a score=258481.000000 s hg38.chr1_KI270759v1_alt 145088 179 + 425601 accattttttgaacagtaaaaaataaagagatatagtatggaaaacaatgtgaaatgtgaatgaatttttaagatagaTA------TTTTAAGATGAATTTTTAAGATATTTTAAGATGAATTTTAAG--------------ATGAATTTTTAAGATAGATATGCTGCTAAG------------------------------------------TAATTTCTTGCTAGATTTCAACTGCTT s panTro4.chr1 224896605 179 + 228333871 accattttttaaacagtaaaacataaagagatatagtatggaaaacaatgtgaaatgtgaatgaatttttaagatagaTA------TTTTAAGATGAATTTTTAAGATATTTTAAGATGAATTTTAAG--------------ATGAATTTTTAAGATAGATATGCTGCTAAG------------------------------------------TAATTTCTTGCTAGATTTCAACTGCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226252099 154 - 229942017 accattttttaaacagtaaaaaataaagagatatagtatggaaaacaacgtgaaatgtgaatgaatttttaagat-----------------------------agatattttaagatgaattttaag--------------atgaattttTGAGATAGATATGCTTCTAAG------------------------------------------TAATT--TTGCTAGATTTCGACTGCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140144619 179 - 143122389 accattttttaaacagtaaaaaataaagagatatagtatggaaaacaatgtgaaatgtgaatgaatttttaagatagata------ttttaagatgaatttttaagatattttaagatgaattttaag--------------atgaattttTAAGCTAGATATGCTTCCAAG------------------------------------------TAATTTCTTGCTAGATTTCGACTGCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16858396 120 - 229590362 accattttttaaacagtcaaaaataaagagatatagtatggaaaacaatgtgaaatgtgaatgaatttttaagataga-------------------------------------------------------------------------------acatgtgcttctaag------------------------------------------taatgtcttgctagatttcgactgctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223620743 120 - 227556264 accattttttaaacagtcaaaaataaagagatatagtatggaaaacaatgtgaaatgtgaatgaatttttaagataga-------------------------------------------------------------------------------acatgtgcttctaag------------------------------------------taatgtcttgctagatttcgactgctt i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82470843 120 + 85787240 cccattttttaaacagtcaaagataaagagatatagtatggaaaacaatgtgaaatgtgaatgaatttttaggataga-------------------------------------------------------------------------------acatgtgcttctaag------------------------------------------tgatgtcttactagatttcgactgctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14151555 118 - 49578535 accattttttaaacagtaaaaaat--agagatatagcatggaatacaatgtgaaatgtgaatgaattttcaagatgga-------------------------------------------------------------------------------gcatgtacttctaag------------------------------------------taatttctttcgagatttggactgctt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36316978 237 + 80974532 ---atctttt-aacaataaaaaacaaagagacatattatggaatgcattgtgaaatggggatgaatttttaagctagagagtgaacttctaagtattgcttgctagatttacgctgttgggggttatgccctcaCTATGTGAACAAATTTACCCTGTAGATTTACTACCAGGATGAGTTCTGTTGTTGTtttttaaagaatcagcattttgatttaattttttaaaagattttatttattt i canFam3.chr7 C 0 I 157 e mm10.chr1 178739844 1422 + 195471971 I e papAnu2.chr1 16671718 1508 - 220367699 I a score=180565.000000 s hg38.chr1_KI270759v1_alt 145267 96 + 425601 TGGGGTGTGTCTTCCTATGGAAATGAATTCCTCGT-GCCCACGGCCATTACATTTCCTACAACGGAAACTTTGACttttgt--ttttttttgaagagac s panTro4.chr1 224896784 95 + 228333871 TGGGGTGTGTCTTCCTATGGAAATGAATTCCTTGT-GCCCACGGCCATTACATTTCCTACAACGGAAACTTTGACTTTTG---Ttttttttgaagagac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226252253 93 - 229942017 TGGGGTGTGTCTTCCTATGGAAATGAATTCCCCGA-GCCCACGGCCATTACATTTCCTACAACGGAAACTTTGAC--TTG---Ttttttttgaagagac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140144798 95 - 143122389 TGGGGTGTGTCTTCCTATGGAAATGAATTCCCCGC-GCCCAGGGCCATTACATTTCCTACAAGGGAAAGTTTGACTTTTG---Ttttttttgaagagac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16858516 94 - 229590362 tggggtgtgccttcCTACAGAAACTAATTCCCCAC-GCCCATGGCCATTACATTTCCCACAACAGAAaatttgacttttg----tttttctgaagagac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223620863 94 - 227556264 tggggtgtgccttcCTACAGAAACTAATTCCCCAT-GCCCATGGCCATTACATTTCCCACAACAGAAaatttgacttttg----tttttctgaagagac i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82470963 94 + 85787240 tggggtgtgccttcCTACAGAAACGAATTCCCCAC-GCCCATGGCCATTACATTTCCCACAACAGGAaatttgacttttg----tttttctgaagagac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14151673 99 - 49578535 tggggtatgcttccCCGTGGGAATTAATTCGGAGCGGCCCATTGCCGTTACATTTACTACCACagagaatttgacttctgttgttttttccggagagac i calJac3.chr19 C 0 C 0 e mm10.chr1 178739844 1422 + 195471971 I e canFam3.chr7 36317215 157 + 80974532 I e papAnu2.chr1 16671718 1508 - 220367699 I a score=303254.000000 s hg38.chr1_KI270759v1_alt 145363 164 + 425601 attttgacttatttttta----ttctaccgtttttctatttgctacctcatttatttctacttctagtttgttattttcttcct---------tctgctttatgttattct-tttttgtaacttttagaatttggaatttaa------------------------------------------------------------tgcttt----------------ttaaaatttttatcaatataagtatttagg s panTro4.chr1 224896879 164 + 228333871 attttgacttatttttta----ttctaccgtttttctatttgctacctcatttatttctacttctagtttgttattttcttcct---------tctgctttatgttattct-tttttgtaacttttagaatttggaatttaa------------------------------------------------------------tgcttt----------------ttaaaatttttatcgatataagtatttagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226252346 167 - 229942017 attttgacttatttttta----ttctaccatttttctatttgctacctcatttatttctacttcgaatttcttattttcttcct-ctg-----ctttctttatgttattcc-tttttgtaacttttagaatttggaatttaa------------------------------------------------------------tgcttc----------------ttaaaatttttatcgatataagtatttagg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140144893 168 - 143122389 attttgacttatttttta----ttctactgtttttctatttgctacctcatttatttctacttctaatttgttattttcttccttctg-----ctttctttatgttattct-tttttgtaacttttagaatttggaatttaa------------------------------------------------------------tgcttt----------------ttaaaatttttatcgatataaatatttagg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16858610 167 - 229590362 attttgacttattttttt----tcctaccatttttctatttgctacctcatttatttctacttctaagttgttatttccttccttctgctttcttttctttaagttgttct-------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---------------------------------------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223620957 184 - 227556264 attttgacttattttttt----tcctaccatttttctatttgctacctcatttatttctacttctaagttgttatttccttccttctgctttcttttctttaagttgttct-tttttgtaacttttagaatttggaatttaa------------------------------------------------------------tgctttttaaaaattttttaaattaaaaattttattgatgtaaatat----- i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82471057 184 + 85787240 attttgacttattttttt----tcctaccatttttctatttgctacctcatttatttctacttctaagttgttatttccttccttctgctttcttttctttaagttgttct-tttttgtaacttttagaatttggaatttaa------------------------------------------------------------cgcttttaaaaaatcttttaaattaaaaattttattaatgtaaatgt----- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14151772 173 - 49578535 attttgacttactttttg----ttctcccgttgttttatttgcgacctcgtttatttctgtgtctcattcgttatttccttccttctgctttattttctttatgttgttct-tttttgtaacttttagaatttgaaatttaa------------------------------------------------------------cgcttt----------------ttaaaatttttattgatgtaaatgtttggg i calJac3.chr19 C 0 C 0 s canFam3.chr7 36317372 172 + 80974532 cccctgatttagtttttattacttctgtcatttttctgtttggtaactcattgatttctgcttttaatt--ttatttcctcccttgtgctgcttttggttcactttgtttttttttttttttttttggaatgggcaacttaa------------------------------------------------------------tgcatt----------------t----atttttattagtataaatgtttagg i canFam3.chr7 I 157 I 190 e mm10.chr1 178739844 1422 + 195471971 I e papAnu2.chr1 16671718 1508 - 220367699 I a score=813541.000000 s hg38.chr1_KI270759v1_alt 145527 373 + 425601 ccataaatgtcccactgttcagtactttaa----------------------------------------ttgtattttatgtatt------------------------cag------------------atagatagtgtttttattaacatttcgttttagaaattctgcaatttgggtttgtagttctccct-tta--cccaataattacttaatatcaaatttttaaatttctgagggtaacagcctctttgttttattacat--ttatttatttctggttgtcttctattatgatcagataatattgtttttattttttaatttatgaa--tttattgagatttgctc--tgagttagttaatgtatagccaatttttatgaatttcacttgag------------------------------------aaggtgtattctcctt----tgggtacaaagtataatatgtatccagaagatcTATCttttttttttt s panTro4.chr1 224897043 373 + 228333871 ccataaatgtcccactgttcagtactttaa----------------------------------------ttgtattttatgtatt------------------------cag------------------atagatagtgtttttattaacatttcgttttagaaattctgcaatttgggtttgtagttctccct-tta--cccaataattacttaatatcaaatttttaaatttctgagggtaacagcctctttgttttattacat--ttatttatttctgtttgtcttctattatgatcagataatattgtttttattttttaatttatgaa--tttattgagatttgctt--tgagttagttaatgtatagtcaatttttatgaatttcacttgag------------------------------------aaggtatattctcctt----tgggtacaaagtataatatgtatccagaagatcTATCTtttttgtttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226252513 372 - 229942017 ccataaatgtcccactgttcagtactttaa----------------------------------------ttgtattttatatatt------------------------cag------------------acagatagtgtttttattaacatttcgttttagaaattctgcaatttgggtttgtagttctccct-tta--cccaataattatttaatataaaatttttaaatttctaagggtaatagcctctttgttttagtacat--ttatttatttctggttgtcttctattatg-tcagataatattgtttttattttttaatttatgaa--tttattgaggtttgctt--tgagttagttaatgtatagtcaatttttatgaatttcacttgag------------------------------------aaggtgtattctcctt----tgggtgcaaagtataatatgtatccagaagatcTATCttttttttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140145061 411 - 143122389 ccataaatatcccactgttcagtactttaa----------------------------------------ttgtattttatgtattattattaacattatctatctataatagatattaacattatctattatagatagtgtttttattaacatttcgttttagaaattctgcaatttgggtttgcagttctccct-tta--cccaataattatttaatataaaatttttaaatttctaagggtaacagcctc----ttttattacat--ttatttatttctggttgtcttctattatgatcagataatattgtttttattttttaatttatgaa--tttattgagatttgctt--tgagttagttaatgtatagtcaatttttatgaatttcacttgaa------------------------------------aaggtgtattctcctt----tgggtacaaagtaaaatatgtatccagaagatcTATCttttttttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16858777 423 - 229590362 ------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtattttatgtatt------------------------cag------------------atagatagtgtttttattaacattttgttttagaaattctgcgacttgggtttctatttctccat-tta--cccaagaattatttaatataaaaattttaaatttctaagggtaatggcctttttgttttattactt--ttatttatttctggttttcttctattatgatcagataatattgtttttactttttaatttacaaa--tttattgagattttctt--tgaattagttaatgtatagtcaatgtttatgaatttcacttggaaaaagtgaaattctCCTTTCTCAAATACACAAAGGAAAAGTGTATTCTCCTTTGTCTGGGAACAAAGTATAATATGTATCCAGAAGATCTATCttttttttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223621141 411 - 227556264 -catgaatgccccactgttcagtactttaa----------------------------------------ttgtattttatgtatt------------------------cag------------------atagatagtgtttttattaacattttgttttagaaattctgcgacttgggtttctatttctccat-tta--cccaagaattatttaatataaaaattttaaatttctaagggtaatggcctttttgttttattactt--ttatttatttctggttttcttctattatgatcagataatattgtttttactttttaatttacaaa--tttattgagattttctt--tgaattagttaatgtatagtcaatgtttatgaatttcacttggaaaaagtgaaattctCCTTTCTCAAATACACAAAGGAAAAGTGTATTCTCCTTTGTCTGGGAACAAAGTATAATATGTATCCAGAAGATCTATC-tttttttttt i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82471241 412 + 85787240 -cataaatgccccactgttcagtactttaa----------------------------------------ttgtattttatatatt------------------------cag------------------atagatagtgtttttattgacattttgttttagaaattctgcgtcttgggtttctttttctccat-tta--cccaagaattatttaatataaaaattttaaatttctaagggtaatggcccttttgttttattactt--ttatttatttctggttttattctattatgatcagataatattgtttttactttttaatttacaaa--tttattgagattttctt--ggaattagttaatgtatagtcaatgtttatgaatttcacttgggaaaagtgaaattctCGTTTCTCAAATACACAAAGGAAAAGTGTATTCTCCTTTGTCTGGGAACAAAGTATAATATGTATCCAGAAGATCTATCttctttttttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14151945 348 - 49578535 ccataaatgtcctaccgttcagtactttaa----------------------------------------ctgtattttatg----------------------------taa--------------------------------------cattttgttttagagattctgcaattcgggtttgaatttctccct-ttacccccaagaattatgtaatatacaatttttaaattcctaaaggtaacagcctttctgttgtattactt--ttatttatttctggttttcttctattataaacagataatattatttttgttttttaattt----a--tttatcgagattatgtttgtgaattagtcaatgtatagccattttttatgaattttactctag------------------------------------aaggtgtattttcctt----tgggtacaatgtataatatgtatcCTGAAGATCTATCtttttttttt- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36317734 367 + 80974532 ctacaaattttccactgattactgttttaa----------------------------------------ttgtatttcatagatt------------------------ctt------------------atgtgcaatggttttattaacagtttgttttagaaattatgcaattttggtttgtatttccccctctca--aatgagaattatttagtacagaatattttaaatccctaggggaggagccttttgcttttattgtcttgttatttatttctggttatattgcattaggatcagataatgtttttacta-tttctactttatgaaactttattgaagctttctt--t--atgAGTTAATGTTAGATCAGTTTTTATGAG--------AAG------------------------------------AAGGTATTCTGTTGTC----TGGTTTCAAAATCTGATGTCTATCTAGAATATCTATGTGGGTTTTTTT i canFam3.chr7 I 190 C 0 e mm10.chr1 178739844 1422 + 195471971 I e papAnu2.chr1 16671718 1508 - 220367699 I a score=256726.000000 s hg38.chr1_KI270759v1_alt 145900 122 + 425601 ttttttttt-----ttttttttggtttttgagatggagtcttgctctctcacccaggc--aagtgcagtggcacaatctcagcttactgcaacctctgcctcctgggttcaaa-aattctcctgcctcag s panTro4.chr1 224897416 120 + 228333871 tttgttttt-----gttttt---gtttttgagatggagtcttgctctctcacccaggc--aagtgcagaggcgcaatctcggcttactgcaacctctgcctcctgggttcaagcaattctcctgcctcag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226252885 118 - 229942017 ttttttttt-----gttttt-------ttgagatggagtcttgctctctcacccaggctggagtgcagtggcgtgatctcggcttactgcaacatctgcctcccgggttcaagcaattctcctgcctcag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140145472 113 - 143122389 tttttt---------ttttt-------ttgagatggagtcttgctctctcacccaggctggagtgcagtggcgcgatctcagcttactgcaacctctgcctcctgggttcaagtgattctcctgcc-cag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16859200 109 - 229590362 --------------tttttt-------ttgggagggggtctaactctgtcacccaggctggagggcagtggcgcgatgttggctcactgcaacctctgcctcccaggttcaagcaattatcctgcctcag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223621552 109 - 227556264 --------------tttttt-------ttgagatggagtctcactctgtcacccaggctggagggcagtggcgcgatcttggctcactgcaacctctgcctcccaggttcaagcaattatcctgcctcag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16673226 123 - 220367699 tttttttttttttttttttt-------ttgaaatggagtctcactctatcacccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccaggttcaagcaattatcctgcctcag i papAnu2.chr1 I 1508 C 0 s chlSab2.chr25 82471653 108 + 85787240 ---------------ttttt-------ttgagatggagtctcactctatcacccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccaggttcaagcaattatcctgcctcag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14152293 106 - 49578535 -----------------ttt-------ttgagacagagtctcactctgtcaccaaggctggagtgcagtggcacgatctcagctcactgcaacatctgcctcccgagttcaagcgattctcttgcctcag i calJac3.chr19 C 0 C 0 s canFam3.chr7 36318101 63 + 80974532 -----------------------------------AAGt---------------------tattgtagtaaaaaaatatc----taatataaaatctac-------attttaaccatttttataattcag i canFam3.chr7 C 0 I 78 e mm10.chr1 178739844 1422 + 195471971 I a score=356694.000000 s hg38.chr1_KI270759v1_alt 146022 127 + 425601 cctcccgagtagctgggattacaggcacccgccatcatgaccagctaatttttgtattttttgtagagatggggtttcaccatgttggccagcctggtcttgaactcctgacctcaggtgatccacc s panTro4.chr1 224897536 127 + 228333871 cctcccgagtagctaggattacaggcacccgccatcatgcccagctaatttttgtattttttgtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacc i panTro4.chr1 C 0 M 281 s ponAbe2.chr1 226253003 127 - 229942017 tctcccaagtagctgggattacaggcacccgccatcatgcccagctaatttttgtattttttgtagagacggggtttcaccatgttggccagcctggtcttgaactcctgacctcaggtgatccgcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140145585 122 - 143122389 cctcccgagtagctgaggttacaggcacccgccatcatgcccagctaatttttgtattttttgtagagacagggttt-----tgttggccagcctggtcttgaactcctgacctcaggtgatccacc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16859309 125 - 229590362 cctcctaagtagctgggattacaggcatctgccatcatgcccagctaatgtttgtaatttttgt--agatggggtttcaccatgttggccagcctggtcttcaactcctgacctcaggtgatccatc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223621661 125 - 227556264 cctcctaagtagctgggattacaggcatctgccatcatgtccagctaatgtttgtaatttttgt--agatgggatttcaccatgttggccagcctggtcttcaactcctgacctcaggtgatccatc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16673349 125 - 220367699 cctcctaagtagctgggattacaggcatctgccatcatgcccagctaatgtttgtattttttgt--agacggggtttcaccatgttggccagcctggtcttcaactcctgacctcaggtgatccatc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82471761 124 + 85787240 cctcctaagtagctgggattacaggcatctgccatca-gcccagctaatgtttgtattttttgt--agacggggtttcaccatgttggccagcctggtcttcaactcctgacctcaggtgatccatc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14152399 126 - 49578535 cctcctgagtagctgggattacaggcatccgccatcatgcccagctaatttttgta-tttttgtagagacagggttttatcatgttgatcacactggtcttgaactcctgacctcaggtgttctgcc i calJac3.chr19 C 0 C 0 e mm10.chr1 178739844 1422 + 195471971 I e canFam3.chr7 36318164 78 + 80974532 I a score=134123.000000 s hg38.chr1_KI270759v1_alt 146149 58 + 425601 cacctcggcctcccaaagtgctgggattacaggtatgagccaccatgcctggcTAAGA s ponAbe2.chr1 226253130 58 - 229942017 cacctcagcctcccaaagtgctgggattacaggcatgagccaccatgcgtggccAAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140145707 58 - 143122389 cacctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcctggccAAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16859434 58 - 229590362 cacctcagcctcccaaagtgctgggattacaggtgtgagccaccctgcctggccAAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223621786 58 - 227556264 cacttcagcctcccaaagtgctgggattacaggtgtgagccaccctgcctggccAAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16673474 58 - 220367699 tacctcagcctcccagagtgctgggattacaggtgtgagccaccctgcctggccaaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82471885 58 + 85787240 cacctcagcctcccaaagtgctgggattacaggtgtgagccaccctgcctggccAAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14152525 57 - 49578535 cgcctcaccctcccaaagtgctggga-tacaggcatgagccactgcacctggccAAGA i calJac3.chr19 C 0 C 0 e mm10.chr1 178739844 1422 + 195471971 I e canFam3.chr7 36318164 78 + 80974532 I e panTro4.chr1 224897663 281 + 228333871 M a score=147478.000000 s hg38.chr1_KI270759v1_alt 146207 64 + 425601 TCTAT-CTTTTTAAAAAAAttatttactgtggcaaaatacatttaacctaagatatgcgattcta s ponAbe2.chr1 226253188 65 - 229942017 TCTATGTTTTTTAAAAAAAttatttattgtggcaaaatacatttaacctaaaatatgtgattcta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140145765 65 - 143122389 TCTATCTTTTTTAAAAAAATTACttattgtggcaaaatacgtttaacctaaaatatgtgattgta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16859492 64 - 229590362 TCTAT-CTTTTTAAAAAAAATAtttattgtggcaaaatacatttaacctaaaatatgtgattcta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223621844 64 - 227556264 TCTAT-CTTTTTTAAAAAAATAtttattgtggcaaaatacatttaacctaaaatatgtgattcta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16673532 64 - 220367699 tctat-cttttttaaaaaattatttattgtggcaaaatacattTAACCTAAAATATGTGATTCTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82471943 64 + 85787240 TCTAT-CTTTTTAAAAAAAttatttattgtggcaaaatacatttaacctaaaatatgtgattcta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14152582 62 - 49578535 TCT---TTTTTTAAAAAAAttatttattgtggcaaaatacatttaccgtaaaatacatgattctg i calJac3.chr19 C 0 C 0 s mm10.chr1 178741266 62 + 195471971 TCTTT-ATTTTAAAAGGACATATTTATCATGATCAGCtaca--taaaataaactttatgacattg i mm10.chr1 I 1422 C 0 e canFam3.chr7 36318164 78 + 80974532 I e panTro4.chr1 224897663 281 + 228333871 M a score=348365.000000 s hg38.chr1_KI270759v1_alt 146271 104 + 425601 agcatttttagttgtacaattcagtggcattaattacattcacattgttgtagaactatcaccattacctgttttcaaaactttttcatccctccaaacaat--ct s panTro4.chr1 224897945 104 + 228333871 AGcatttttaattgtacaattcagtggcattaattacattcacattgttgtagaactatcaccattacctgttttcaaaactttttcatccctccaaacaat--ct i panTro4.chr1 M 281 C 0 s ponAbe2.chr1 226253253 104 - 229942017 aggatttttaattgtacaattcagtggcactaattacattcacaatgttgtacaactatcaccattacctgttttcaaaactttttcatccctccaaacaat--ct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140145830 104 - 143122389 agcatttttaattgtacaattcagtggcattaattacattcacaatgttgtacaactatcaccattacctgttttcaaaactttttcatccctccaaacaat--ct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16859556 104 - 229590362 agcatttttaagtgtgcaattcagtggcattaattacattcacgatgttgtacaactgtcaccactacctgttttcaaaactttttcatccgtccaaacaat--ct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223621908 104 - 227556264 agcatttttaagtgtgcaattcagtggcattaattacattcacgatgttgtacaactgtcaccactacctgttttcaaaactttttcatccgtccaaacaat--ct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16673596 104 - 220367699 AGCATTTTtcagtgtgcaattcagtggcattaattacattcacgaTGTTGTACAACTGTCACCACTAcctgttttcaaaactttttcatccGTCCAAACAAT--CT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82472007 104 + 85787240 agcatttttaagtgtgcaattcagtggcattaattacattcacgatgttgtacaactgtcaccactacctgttttcaaaactttttcatccgtccaaacaat--ct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14152644 104 - 49578535 agcattttaaaatgtacaattcagtggcattaatgacattcacagtgttgtacaagtatcaccactacctgttttcaaacctttttcgtcactccaggcaat--ct i calJac3.chr19 C 0 C 0 s mm10.chr1 178741328 103 + 195471971 -ggagttttaagtgtacaactcagtgtcattagttatattcacagtgctctacagctgccattgctatctgcttccaaaac--tttcatcactgcaagtggctact i mm10.chr1 C 0 C 0 e canFam3.chr7 36318164 78 + 80974532 I a score=2408207.000000 s hg38.chr1_KI270759v1_alt 146375 710 + 425601 ctgtaacc----attaagtaataactcc-ccactctcctcccctcaacccctggtggcctccaatccactttttgtttctgtggatttgcctac----------tcataaaagtggaatcatacaatatttaa-ccttttgtgtctgatttatttcac----ttagcataatattttcaaggtttatccatgttgtagtgtgcatcggaattttattcctttgtatggctgaataacagcatatcattgtatgtattatatataccatacttt-tttatttatttatctgttcatagacacttggactgtttccatctttg--gctattatgtaagtaatgctgctatgaacgatggt-gttcaaatatctctttgagtctctgtgttcagttcttttgggtttataactatgagtggaattgccgagtcatac----aacacttgtatgtttagctttttgaggaaccg---------tccaactgttttccacagcggctgc-cca-ttt----tac----ccatcagcaatataccagggttcc------------------agtttcttcacattctcgacagtatttattttcc-ttttttttaaaaaaagaa---------aaagttatggccattctattagatatgaggtggtat---gtcatgatttt--gatttgcatttccctagtgactaagagatgatgttgatcatctcttcatgtgtttactggtcatttgaatatcttctttggaaaaaaaagtctattcaaatccttcgtcca s panTro4.chr1 224898049 708 + 228333871 ctgtaacc----attaagtaataactcc-ccactctcctcccctcaacccctggtggcctccaatccactttctgtttctgtggatttgcctac----------tcataaaagtggaatcatacaatatttaa-ccttttgtgtctgatttatttcac----ttagcataatattttcaaggtttatccatgttgtagtgtgcatcggaattttattccattgtatggctgaataacagcttaccattgtatgtattatatataccatacttt-tttatttatttatctgttcatagacacttggactgtttccatctttg--gctattatg--aataatgctgctatgaacaatggt-gttcaaatatctctttgagtctctgtgttcagttcttttgggtttataactatgagtggaattgccgagtcatac----aatacttgtatgtttagctttttgaggaaccg---------tccaactgttttccacagcggctgc-cca-ttt----tac----ccatcagcaatataccagggttcc------------------agtttcttcacattctcgacagtatttattttcc-ttttttttaaaaaaagaa---------aaagttatggccattctattagatatgaggtggtat---gtcatgatttt--gatttgcatttccctagtgactaagagatgatgttgatcatctcttcatgtgtttattggtcatttgaatatcttctttggaaaaaaaagtctattcaaatccttcgtcca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226253357 704 - 229942017 ctgtaacc----attaagtaatagctcc-ccactctcctcccctcaacccctggtggcctccaatccactttttgtttctgtggatttgcctcc----------tcataaaagtggaatcatacagtatttaa-ccttttgtgtctgatctgtttcac----ttagcataatattttcaaggtttatccatgttgtagtgtgcatcggaattttattcctttgtatggctgaataacagcataccattttatgtattatatataccatac----tttatttatttatctgttcatagacaattggattgtttccatctttg--gctattatg--aataatgctgctatgaacaatggt-attcaaatatctctttgagtctctgtgttcagttcttttgggtttataactatgagtggaattgccgagtcatac----aatacttgtatgtttagctttttgaggaaccg---------tccaactgttttccacagtggctgc-cca-ttt----tac----ccatcagcaatataccagggttcc------------------aatttcttcacattctcgacagtatttattttcc-tttttttaaaaaaaagaa---------aaagttatggccattctattagatatgaggtggtat---gtcatgatttt--gattcgcatttctctagtgactgagagatgatgttgatcatctcttcatgtttttattggtcatttgaatatcttctttgg-aaaaaaagtctattcaaatccttcgtcca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140145934 709 - 143122389 ctgtaacc----attaagtaataattcc-ccactctcctcccctcaacccctggtggcctccaatccactttctgtttctgtggatttgcctac----------tcataaaagtggaatcatacaacgtttaa-ccttttgtgtctgatttatttcac----ttagcataatattttcaaggtttatccatgttatagtgtgcatcagaattttattcctttgtatggctgaataacagcataccattgtatgtattatgtataccatacttt-tttatttatttatctgttcatagacacttggattgtttccatctttg--gctattatg--aataatgctgctatgaacaatggt-gttcaaatatctctttgagtctctgtgttcagttcttttgggtttataactatgagtggaattgccgagtcgtac----aatacttgtatgtttagctttttgaggaaccg---------tccagctgttttccacagcagctgt-cca-ttt----tac----ccatcagcaatataccagggttcc------------------agtttcttcacattctcgacagtatttattttcctttttttttaaaaaaagaa---------aaagttatggccattctattagatatgaggtggtat---gtcatgatttt--gatttgcatttctttagtgactaagagatgatgttgatcatctcttcatgtgtttattggtcatttgaatatcttctttggaaaaaaaagtctattcaaatccttcatcca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16859660 709 - 229590362 ctgtaacc----actaagcaataacttt-ccactctcctcccctcagcccctggtggcctccagtccactttctgtttctgtggatttgcctgt----------tcataaaagtggaatcatacaatatttat-ccttttgtgtctgatttctttcac----ttagcataatattttcaaggtttatccatgttgtagtgtgactcggaattttattcctttgtatggctgaattacagcataccattgtttgtattatatataccatacttt-tttattcatttatctgttcatagacgcttggattgtttccacctctg--gctattatg--aataatgctgctgtgaacattggc-gttcaagtatctctttgagtctctgtgttcaattcttttgggtttataactatgagtggaattgctgagtcatac----aataattgtatgtttagctttttgaggaactg---------tccaactgttttccacagcagctgc-cca-ttt----tac----ccatcagcaacacaccagggttcc------------------actttcttcacattctcgccaatctttattttcctttttttctttttaaagaa---------aaagttatggccattctagtagatatgaggtggtat---gttgtgatttt--gatttgcatttccctagtgactaagagttgatgttgatcatctcttcatgtgtttattggtcatttgaatatcttctttggaaaaaaaaggctattcaaatccttcatccg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223622012 709 - 227556264 ctgtaacc----actaagcaataacttt-ccactctcctcccctcagcccctggtggcctccagtccactttctgtttctgtggatttgcctgt----------tcataaaagtggaatcatacaatatttat-ccttttgtgtctgatttctttcac----ttagcataatattttcaaggtttatccatgttgtagtgtgactcggaattttattcctttgtatggctgaatgacagcataccattgtttgtattatatataccatacttt-tttgttcatttatctgttcatagacgcttggattgtttccacctctg--gctattatg--aataatgctgctgtgaacattggc-attcaagtatctctttgagtctctgtgttcaattcttttgggtttataactatgagtggaattgctgagtcatac----aataattgtatgtttagctttttgaggaactg---------tccaactgttttccacagcagctgc-cca-ttt----tac----ccatcagcaacacaccagggttcc------------------actttcttcacattctcgccaatctttattttcctttttttctttttaaagaa---------aaagttatggccattctagtagatatgaggtggtat---gttgtgatttt--gatttgcatttccctagtgactaagagttgatgttgatcatctcttcatgtgtttattggtcatttgaatatcttctttggaaaaaaaaggctattcaaatcctttatccg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16673700 709 - 220367699 CTGTAACC----ACTAAGCAATAACTTT-CTACtctcctcccctcagcccctggtgGCCTCCAgtccactttctgtttctgtggatttgcctgt----------tcaTAAAAGTGGAATCTtacaatatttat-ccttttgtgtctgatttctttcac----ttagcataatattttcaaggtttatccatgttgtagtgtgactcggaattttattcctttgtatGGCTGAATGACAGCATACCATTGTTTGTATTATATATACCatacttt-tttattcatttatctgttcatAGACGCTTGGACTGTTTCCACctctg--gctattatg--aataatgctgctgtgaacattagC-GTTCAAGTATCTCTTTGAGTCTCTGTGttcaattcttttgggtttaTAACtatgagtggaattgctgagtcatac----aATAATtgtatgtttagctttttgaggaactg---------tccaactgttttccacagcagctgc-cca-TTT----TAC----CCATCAGCAACACACcagggttcc------------------agtttcttcacattctcgccaatctttattttcctttttttctttttaaagaa---------caagtTATGGCCATTCTAGTAGATATGAGGTGGTAt---gttatgatttt--gatttgcatttccctagtgactaagAGTTGATGTTGATCATctcttcatgtgtttattggtcatttgaatatcctctttggaaaaaaaaggCTATTCAAATCCTTCATCCG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82472111 709 + 85787240 ctgtaacc----actaagcaataacttt-ccactctcctcccctcagcccctggtggcctccagtccactttctgtttctgtggatttgcctgt----------tcataaaagtggaatcatacaatatgtat-ccttttgtgtctgatttctttcac----ttagcataatattttcaaggtttatccatgttgtagtgtgactcggaattttattcctttgtatggctgaacgacagcataccattgtttgtattatatatgccatacttt-tttattcatttatgtgttcataggcgcttggattgtttccacctctg--gctgttatg--aataatgctgctgtgaacactggc-gttcaagtatctctttgagtctctgtgttcagttcttttgggtttataactatgagtggaattgctgagtcatac----aataattgtatgtttagctttttgaggaactg---------tccaactgttttccacagcagctgc-cca-ttt----tac----ccatcagcaacacaccagggttcc------------------agtttcttcacattctcaccaatatttattttcttttttttctttttaaagaa---------aaagttatggccattctagtagatatgaggtggtat---gttatgatttt--gatttgcatttccctactgactaagagttgatgttgatcatcacttcatgtgtttattggtcatttgaatatcttctttggaaaaaaaaggctattcaaatccttcatccg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14152748 686 - 49578535 ctgtaacc----agtaagcagtaacccc-ccactctcctcccctcaac---------cctccagtctgctttctgtttctgtggatttgcatac----------gcataaaagtggaatcatatagtatttat-cctttcatgttggatttctttcac----ttggcataatattgtcaaggtgtatccatgcggtagtgtgcatggaaattgtatccctttgtatggctgaatgacagcatgccat----tgtgttatgtataccatacctg-tttattcatttgtccattcacagacgcttggattgtctccacctgtg--gccattatg--gatcatgttgctctgaacactggc-attcaactgtctgtttcggtctctgtgttcagttcttttgggtttacaactatgagtggaattgctg-gtcatac----aataattgtatgtttagctttttgaggagctg---------cccagctgttttccacagcaggtgc-cca--tt----tgc----ccatcagcaa-----atggcttct------------------agtttcttcacactctcaccagtatttatttccc-ttttttttttcttttaaa---------tctgttctagccattctagtagataagaggt-gtag---gtcatgacttc--gatttgcatttccctagtgactaagagatgacgttgatcatctcttcagatgtttattggt-atttgaatatcttctttggaaaaaaacatctattcaaattctttgtcca i calJac3.chr19 C 0 C 0 s mm10.chr1 178741431 724 + 195471971 ttgtaacc----aatgagcaacaagt----aaatctccatc------tgcctattgacctctggtttatcttctgtctcta-ggatttgcctattctggacttgtcatgtaagcagagtcaaacagcatgtgtccctttcatggctggcttagctggctatgttgacacaatgttcttaaggtttgccaatacagtggcatgtgttagaattcaatccctctttatgcctga-----agaatgcttctgtgtgtg---cacatgccgcactctggttatccactcttctgctcctggacctttgggttaatttcttttctggcgccattgct--gaagaaagtgtgacggacatgagcaggtaaagcatctctttgggtctctgtgtcaactttttttgcctctgcacctctgggtggaattgttgagctccgtggcaggcaattgcacatgcagccttctgaggaactgcactctgcaccca--tgctttccatggcaaccac-acaattt----tgcgtttctcccaggatgacgcgagggctcctggttgtttgttttgttttgtttttttccagcctcac---tatttgtttttc-tttt-----------------------aaaatgacaacaattctagtgggtgtgagattgtat---aatgtgttttttaaatttgcatttccctaatagttaa----tgatgttgatcaactcttcatgtacatatagaatgcttgattatcttctttgggaaaaaatgtcagttcaaatccctgttctg i mm10.chr1 C 0 C 0 s canFam3.chr7 36318242 705 + 80974532 ctgtaaccttgaagcaagcaataactcctcccttcccccttccccagctcgtagtaacctctattctactttctgccgctatgaa-ttgcctattctagatattttatgtaagtggaatcattcaatatttgt-cgttttgtgtctagtgtctttcac----ttaa------gtttttgaggtctgtccaagttgtgccacatatcagaattttgttcttt--tatggccgaataata---ttccattgtat-----atagagaccacattttgttcatccgttcatctgttcatgggcacctggctctttctactttttg--gctattgta--aataatgctgcagtgaacattggt-gtac------------gagtgcctgctttgagttcttgggggtatacacctaggagtagaattgctgggtcatat----ggtaattctgtgtgcagctttttgaggcactg---------tccatctgtcttctgcagtgactgcatca-tttgaaattc----ctaccagaaa-ggatgagggttcc------------------aattacttcacatctttacccacacttattattt-ctatttttgtttgcttaattgtttttttaaagtagagccatcctagtaggtatgaagtgatatctcattgtggtttt--gatttgcattttcctgacggctaa----tgacactgagcgtctcttcatgtgcttattggccatttgtgtatcttctttgg--agaaatgactattcaaatcccttgctca i canFam3.chr7 I 78 I 152 a score=574416.000000 s hg38.chr1_KI270759v1_alt 147085 178 + 425601 ttatct--------ttatattgttgagttttaggagttctttatatattctggatac-aaacatttatcatatatatgatttgtaaatattttcttccat------tctatagtttgtcttt--acacttttttgataatgtcctttggtgcacaaaagcttttaattttagtgaagtcca---gtttatcttttctt s panTro4.chr1 224898757 179 + 228333871 ttatct--------ttatattgttgagttttaggagttctttatatattctggatactaaacatttatcatatatatgatttgtaaatattttcttccat------tctatagtttgtcttt--acacttttttgataatgtcctttggtgcacaaaagcttttaattttagtgaagtcca---gtttatcttttctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226254061 179 - 229942017 ttgtct--------ttatattgttgaattttaggagttctttatatattctggatactaaacatttatcatatatatgatttgtaaatattttcttccat------tctataggttgtcttt--acacttttttgataacgtcctttggtgcacaaaagcttttaattttagtgaagtcca---gtttatcttttctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140146643 179 - 143122389 ttatct--------ttatattgttgagttttaggagttctttatatgttctagctactaaacatttatcatatatatgatttgtaaatattttcttccat------tctatagtttgtcttt--acacttttttgataatgtcttttggtgcacaaaagcttttaattttagtgaagtcca---gtttatcttttctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16860369 179 - 229590362 ttatct--------ttttattgttgagttttaggagttctttatacattctagatactaaacatttatcatatatgtgatttgtaaatatattcttccat------tctatagtttgtcttt--acacttttttgatcatgtcttttggtgcacaaaagcttttaattttagtgaagtcca---gttcatcttttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223622721 179 - 227556264 ttatct--------ttttattgttgagttttagaagttctttatacattctagatactaaacatttatcatatatgtgatttgtaaatatattcttccat------tctatagtttgtcttt--acacttttttgatcatgtcttttggtgcacaaaagcttttaattttagtgaagtcca---gttcatcttttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16674409 179 - 220367699 TTATCT--------TTTTAtcgttgagttttaggagttctttatacattctggatactaaacatttatcatatatatgatttgtaaatatattcttccat------tctATAGTTTGTCTTT--ACACTTTTTTGATCATGTCTTTTGGtgcacaaaagcttttaattttagtgaagtcca---gtttatcttttctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82472820 179 + 85787240 ttagct--------ttttattgttgagttttaggagttctttatacattctggatactaaacatgtatcatatatgtgatttgtaaatatattcttccat------tcgatagtctgtcttt--atacttttttgatcatgtcttttggtgcacaaaagcttttaattttagtgaagtcca---gtttatcttttctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14153434 185 - 49578535 ttatct--------ttttattgttgagttttaggagttctttatatattctggatactgaacgtttatcatatatatgatttgtaaatattttcttctatagtttgcctctagtttgtcttt--atatttttttgataatgcccttcgatgtacaagagcttttaattttagtgaagtcca---gtttatcttttctt i calJac3.chr19 C 0 C 0 s mm10.chr1 178742155 176 + 195471971 ttttctaagctttcttttgctgttgag-tttagaatctctgtagaaactctggatattaagcc-------------tgatttgcagatactttgggc-gt------tctttaggttgtcttttatttctcttctaataat-cctttgggggcacccaagcctttacttttgatgaagttcaatgatctattttttttt i mm10.chr1 C 0 I 195 e canFam3.chr7 36318947 152 + 80974532 I a score=1223669.000000 s hg38.chr1_KI270759v1_alt 147263 417 + 425601 ctgttgcttgtgcttttagtgtcatatttaataatctgttgtcaaatcctaagttgcaaagattt-acctgtatgttttctcctaagggttttatagttatagctctcatatttgggttctttacctattttgagttaattttttgtgtatggtgtgaggtaggggcccaacttcattcctttgcatgtagaaatctggttgtcccagaacACTAGA---TCTGTTTTATTGATCATG--TTATTTAGATCTTCTATAGCTTTA------TTTTTT-TAAAAAATCTCCCTGAATTACCTTGGACTAAGAGTGGCAATTTCAAGCAGCATTATTAAgagccatacagaagcctgaggcaaaaggaaaaatcagtaatactgcatcctgtctttatataaaatat-aaaattttcacattttattcatcaca s panTro4.chr1 224898936 417 + 228333871 ctgttgcttgtgcttttagtgtcatgtttaataatctgttgtcaaatcctaagttgcaaagattt-acctgtatattttctcctaagagttttatagttatagctctcatatttgggttctttacctattttgagttaattttttgtgtatggtgtgaggtaggggcccaacttcattcctttgcatgtagaaatccggttgtcccagaacACTAGA---TCTGTTTTATTGATCATG--TTATTTAGATCTTCTATAGCTTTA------TTTTTT-AAAAAAATCTTCCTGAATTACCTTGGACTAAGAGTGGCAGTTTCAAGCAGCATTATGAAgagccatacagaagcctgaggcaaaaggaaaaatcagtaatacttcatcttgtctttgtataaaatat-aaaattttcacattttattcatcaca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226254240 418 - 229942017 ctgttgcttgtacttttagtgtcatatttaataatctgttgtcaaatcctaagttgcaaagattt-acctgtatgttttctcctaagagttttatagttatagctctcatatttgggttctttacctattttgagttaattttttgtgtatggtgtgaggtaggggcccaacttcattcctttgcatgtagaaatccagttgtcccagaacACTAGA---TCTGTTTTATTGATCATG--TTATTTAAGTCTTCTATAGCTTTA------TTTTTTAAAAAAAATCTTCCTGAATTACCTTGGACTAAGAGTggcaggttcaagcagcattatgaagagccatacagaagcctgagtcaaaaggaaaaatcagtaatactgcatcttgtctttatataaaatat-aaaattttcacattttattcatcata i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140146822 418 - 143122389 ctgtcacttgtgcttttagtgtcatatttaataatctgttgtcaaatcctaagttgtgaagattt-acctgtatgttttctcctaagagttttatagttatagctctcatatttgggttctttaccaattttgagttaattttttgtgtatggtgtgaggtaggggcccaacttcattcctttgcgtgtagaaatccagttgtcccagaacACTAGA---TCTGTTTCATTGATCATG--TGATTTAGGTCTTCTATAGCTTTA------TTTTTT-TAAAAAATCTTCCTGAATTACCCTGGACTAAGAGTGGCAGTTTCAAGCAGCATTATGAAgagccatacagaagcctgaggcaaaaggaaaaatcagtaatactgcatcttgtctttatataaaatataaaaattttcacattttattcagcata i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16860548 411 - 229590362 ctgttgcttgtgcttttagtgtcatatttaataatctgttgtcaaatcctaagttgtgaagattt-acctgtatgttttctcctaagagttttgtagttatagctctcatatttgggttctttacctattttgagttaattttttgtgtgtggtgtgaggtaggggcccaacttca----tttgcatgtagaagtccacttgtcccagaacACTAGA---TCTGTTTTATTGATCATG--TTACTTCAGTCTTCTATAGCTTTA------TTTTT--AAAAATATCTTCCTGAATTACCTTGAACTAAGAGTggcagattcaagcagcatcatgaagagccataaagaagcctgaggcaaaagg-aaaatcagtaatactgcatcttgtttttatataaaatgt-aaaattttcacattttattcatcata i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223622900 411 - 227556264 ctgttgcttgtgcttttagtgtcatatttaataatctgttgtcaaatcctaagttgtgaagattt-acctgtatgttttctcctaagagttttgtagttatagctctcatatttgggttctttacctattttgagttaattttttgtgtgtggtgtgaggtaggggcccaacttca----tttgcatgtagaagtccacttgtcccagaacACTAGA---TCTGTTTTATTGATCATG--TTACTTCAGTCTTCTATAGCTTTA------TTTTT--AAAAATATCTTCCTGAATTACCTTGAACTAAGAGTggcagattcaagcagcatcatgaagagccataaagaagcctgaggcaaaagg-aaaatcagtaatactgcatcttgtttttatataaaatgt-aaaattttcacattttattcatcata i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16674588 408 - 220367699 ctgttgcttgtgcttttagtgtcatatttAATAATCTGTTGTCAAATCCTAAGTTGTGAAGATTT-ACCTGTATGTTTtctcctaagagttttatagttataGATCTTATACTTGGGTTCTTTacctattttgagttaattttttttgtgtggtaTGAGGTAGGGGCCCAACTTCA----TTTGCATGTAGAAGTCCACTTGTCCCAGAACACTAGA---TCTGTTTTATTGATCATG--TTACTTCGGTCTtctatagcttta------ttttt--taaaaaatcttcctgaATTACCTTGAACTAAGAGTGGCAGATTCAAGCAGCATCATGAAGAGCCATACAGAagcctgaggcaaaagg-aaaatcAGTAATACTGCAtcttgtttttatataaaatgt-aaaattttcacattttat---tcata i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82472999 411 + 85787240 ctgttgcttgtgcttttagtgtcatatttaataatctgttgtcaaatcctaagttgtgaagattt-acctgtatgttttctactaagagttttatagttatagctctcatatttgggttctttacctattttgagttaattttttgtctgtggtgtgaggtaggggcccaacttca----tttgcatgtagaagtccacttgtcccagaacACTAGA---TCTGTTTTATTGATCATG--TTACTTCAGTCTTCTATAGCTTTA------TTTTT--TAAAAAATCTTCCTGAATTACCTTGAACTAAGAGTggcagattcaagcagcatcatgaagagccatacagaagcctgaggcaaaagg-aaaatcagtaatactgcatcttgtttttatataaaatgt-aaaattttcatattttattcatcata i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14153619 419 - 49578535 ctgttgcttgtgcttttagtgtcatatttaataatctgttgtcaaatcgtaagttgggaagattt-acctgtatgttttctcctaagcgttttatagttagatctctc-tatttgggttctttagccattttgagttaatttttt-tgtatagtgtgaggtgggggtccagctccactcctttgcgtgtagaactccagtggtcccagaacACTAGAAGGTCTGCTTTACTCATCATG--TTATTTAGGTCTACTCTAGTTTTATTCTACTTTTTT-TA----ATCTTCCTGAAGTACCTTGGACTAAGAGTggcagattcaagcagcgtcatgaagagccatgcagaagcctagggcaaaaagaaaaattagttaaactgcatcttgtctttata-aaaatat-aaaatgttcacattttattcattata i calJac3.chr19 C 0 C 0 s mm10.chr1 178742526 330 + 195471971 ttgttgctcatacctggaacattcaacctaagagtcca-tgccaagtcctatatt----cgattcgatctata---tttttcctaagagttttatagactcagcttttatattt-agttatttatc-gttctgagtgaattttt--tggatggtgtgaagag-----tcagctgcattcttttgcatatacaaatccagC-ACACCAGAA----AAA---TCTG--TGATTGATCTTGATGTACTCGGGCCTCTTagagccatg------c------taaa----------------------------------------------------------ctgtttgggagcctgagataaaaggaaaaatcagtggtggttt-ttgtgtcttcaGATGGGATTT-CAAG-ATAGACATCACATGGAACGA- i mm10.chr1 I 195 C 0 e canFam3.chr7 36318947 152 + 80974532 I a score=472413.000000 s hg38.chr1_KI270759v1_alt 147680 168 + 425601 attttttgcatttatttttattttttaaagtattgcattaaaagattat--tgattttggttcctgagtttttgccatcaccttgaattatgtgaccaagaagagtgcctttt-caccttactatagtcccagccctgGGGTAAAGGCTCCTAATTTGAGTGTGTTTCTGT s panTro4.chr1 224899353 168 + 228333871 attttttgcatttatttttattttttaaagtattgcattaaaagattat--tgatttttgttcctgagtttttgccatcaccttgaattgtgtgaccaagaagagtgcttttt-caccttactatagtcccagccctgGGGTAAAGGCTCCTAATTTGAGTGTGTTTCTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226254658 168 - 229942017 attttttgcatttatttttattttttaaagtattgcattaaaatattat--tgattttggttcctgagtttttgccgtcaccttgaattgtgtggccaagaagagtgcctttt-caccttactatagtcccagccctgGGGTAAAGGCTCCTAATTTGAGTGTGTTTCTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140147240 168 - 143122389 attttttgcatttatttttatttttcaaagtattacattaaaatattat--tgattttgtatcctgagtttttgccatcaccttgaattgtgtgcccaagaagagtgcctttt-cactttagtatagtcccagccctgGGGTAAAGTCTCCTAATTTGAGCGTGTTTCTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16860959 166 - 229590362 attttttgcatttattgttatttttaaaattattgcatt-aaatattat--tgattttggttcctgagtttttgtcatcaccttg-attgtgtgcccaaggagagtgtctttt-catcttactgcagtcccagccctgGGGTAAAGGCTCCTAATTTGAGTGTGTTTCTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223623311 166 - 227556264 attttttgcatttattgttatttttaaaagtattgcatt-aaatattat--tgattttggttcctgagtttttgtcatcaccttg-attgtgtgcccagggagagtgcctttt-catcttactgcagtcccagccctgGGGTAAAGGCTCCTAATTTGAGTGTGTTTCTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16674996 167 - 220367699 attttttgcatttatttttattttttaaagtattgcatt-aaatattat--tgattttgGTTCCTGAGTTTTTGCCATCACCTTGAATTGTGTGCCCAAGGAGAGTGCCTGTT-CACCttactgtagtcccagccctGGGGTAAAGGCTCCTAATTTGAGTGTGTTTCTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82473410 167 + 85787240 attttttgcatttatttttattttttaaagtattgcatt-aaatattat--tgattttggttcctgagtttttgccatcatcttgaattgtgtgcccaaggagagtgcctttt-caccttactgtagtcccagccctgGGGTAAAGGCTCCTAATTTGAGTGTGTTTCTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14154038 98 - 49578535 actttttgcatct----ttattttttaaagtattgcattgaaacattat---------------------------------------------------------------------ttaCTGCAGTCCCAGCCCTAGGGTAAAGGCTCCTAATTTGAGTATGTTTCTAT i calJac3.chr19 C 0 I 284 s mm10.chr1 178742856 149 + 195471971 ------TGTGTTTACTGAGGgtttt----gttttgtttt---gttttgt--t--ttTTGTTTACTGAGTTTTTTACACCTCTTTCAGTTGTACATGTAAGACACAGACCTGGC-CCTTCCATCCCAGCCCCAGCCATAGGA-AAAGGCTCTGGCT---AGTGTTTCTCTCC i mm10.chr1 C 0 I 5 s canFam3.chr7 36319099 164 + 80974532 attttctctctctctctctctctctaaaaaaat-------aaatattatatttatcttggctcctgagtttttggcactttcttaaactgtgcagctgaggaaagtgcttcacaaacctcacccgagtcctggGCATGGGttaaagtttcctgttattagtgtgtttctgt i canFam3.chr7 I 152 C 0 a score=257592.000000 s hg38.chr1_KI270759v1_alt 147848 79 + 425601 CTATGTCTTCTTGCAGCTCATGTGGtttt-gcatttttgaaagcggttgc--------------------catgtatct---------ggtataaaaatattcacaagt s panTro4.chr1 224899521 79 + 228333871 CTATGTCTTCTTGAGGCTCATGTGGtttt-gcatttttgaaagcggttgc--------------------catgtatct---------ggtataaaaatattcacaagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226254826 79 - 229942017 CTATGTCTTCTTGCAGCTTATGTGGTTAG-GCATTTTTGAAAGCGGTTGC--------------------CATGTATCT---------GGTATAAAAATATTCACAAGT i ponAbe2.chr1 C 0 M 168 s nomLeu3.chr5 140147408 79 - 143122389 CTGTGTCTTCTTGCAGCTCATGTGGTTTT-GCATTTTTGCaagcggttgc--------------------catgtatct---------ggtataaaaatattcacaagt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16861125 79 - 229590362 CTATGTTTTCTTGCAGCTCATTTGGtttt-gcatttttgaaagcggttgc--------------------catgtatct---------tgtataaaaatattcacaagt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223623477 79 - 227556264 CTATGTTTTCTTGCAGCTCATTTGGtttt-gcatttttgaaagcggttgc--------------------catgtatct---------tgtataaaaatattcacaagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16675163 79 - 220367699 CTATGTTTTCTTGCAGCTCATTtggtttt-gcatttttgaaaGCAGTTGC--------------------CATGTATCt---------tgtataaaaatattcacaagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82473577 79 + 85787240 CTATGTTTACTTGCAGCTTGTTTGGCttt-gcatttttgaaagcgattgc--------------------catgtatct---------tgtataaaaatattcacaagt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14154420 79 - 49578535 CTATTTCTTCTTGCAGCTCATGTGGtttt-gcgttactgaaagcagttcc--------------------catgtatct---------ggtataaaagaactcacaagt i calJac3.chr19 I 284 C 0 s mm10.chr1 178743010 109 + 195471971 CTCTATCGTTTTTCTTTTTCTTTCACTCTAACTTTTTTTGAAGCAGCTACtatacaaatatatatatatatatgtatatatatatatagatagatagatatGCGCCATT i mm10.chr1 I 5 I 12 s canFam3.chr7 36319263 78 + 80974532 gtatttccccttgaagctcatgtagtttt-at-tttttggaagtgaatgc--------------------tctgtattt---------ggtaccaaaatattcacaaat i canFam3.chr7 C 0 C 0 a score=256498.000000 s hg38.chr1_KI270759v1_alt 147927 89 + 425601 gttttacttctgctgtaaattgtgactttttctattacagtgttatttgtc----gtaat--actttttggca-tggattctgccttgtctgttat s panTro4.chr1 224899600 89 + 228333871 gttttacttctgctgtaaattgtgactttttgtattacagtgttatttgtc----gtaat--actttttggca-tggattctgccttgtctgttat i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140147487 89 - 143122389 gttttacttctgctgtaaattgtggctttttgtgttacagtgttatttgtc----ataat--actttttggca-tgaattctgccttgtctgatat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16861204 89 - 229590362 gttttacttttgctgtaaattgtggctttttgtattacagtgttatttgtc----ataat--gctttttggca-tggattctgccttgtctgatac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223623556 89 - 227556264 gttttacttttgctgtaaattgtggctttttgtattacagtgttatttgtc----ataat--actttttggca-tggattctgccttgtctgatac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16675242 89 - 220367699 GTTTTACTTTTGCTGTAAATTGTGGCTTTTTGTATTACAGTGTTATTTGTC----ATAAT--ACTTTTTGTCA-TGGATTCTGCCTTGTCTGATAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82473656 89 + 85787240 gttttacttttgctgtcaattgtggctttttgtattgcagtgttatttgtc----atagt--actttttggca-tggattctgccttgtctgatac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14154499 89 - 49578535 gttttacttttgctgtaaattgtggctttttgtgtgacagtgctgtttggc----tcact--actttgtggca-tgagttctgccttgtctgatat i calJac3.chr19 C 0 C 0 s mm10.chr1 178743131 88 + 195471971 GTTATAATTTTGCTATGAAATGTGACTTTCAGGGTTGCACTATCTTTTATC----TTGTTTAACGTTTGGGGGCTGGATTTTACTTTGC----TAT i mm10.chr1 I 12 C 0 s canFam3.chr7 36319341 93 + 80974532 atcatacttttgctatgagttgtggcttttactattaaaatgtcttttgtcttgtttaat--gctttttgacc-tggatcctaccttgcctgatat i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226254905 168 - 229942017 M a score=1347291.000000 s hg38.chr1_KI270759v1_alt 148016 389 + 425601 caggattacaAACGATAGGGGAAAAGATAAGACACTAACAAGTCTTCAGTTTACCAATGATGAAATCAGGGCCCAAGGACTCTGGCAACAGTTGAAAGAATTATGATCATTAAGTT-AAAAAT-GTTTATT--ACTTCTAAATCCTGATATTAAAGT---AACAGCC-CAGCGTACTTCCATGTAGAAATGATGTCATTCTGAAATGGTATAAATAAAAATTATAGTCAATATTCTCATCATGTTCAAGCAGGGCATGGGCCACAAACCCACCTAAGGACCT--------------------------GGGAAGGGCGGGT---TTC-------------AATAACCTTCAGGCTGA---------------------ATGCCACTCATACAAATAAGAAGCGTGGAAGCTGAGGGAAGGCCAATCAGTTGAAGTAGGGTGATTCAGCCCACT---CAATATT-------- s panTro4.chr1 224899689 389 + 228333871 caggattacaAACGATAGGGGAAAAGATAAGACACTAACAAGTCTTCAGTTTACCAATGATGAAATCAGGGTCCAAGGACTCTGGCAACAGTTGAAAGAATTATGATCATTAAGTT-AAAAAT-GTTTATT--ACTTCTAAATCCTGATATTAAAGT---AACAGCC-CAGCGTACTTCCATGTAGAAATGATGTCATTCTGAAATGGTATAAATAAAAATTATAGTCAATATTCTCATCATGTTCAAGCAGGGCATGGGCCACAAACCCACCTAAGGACCT--------------------------GGGAAGGGCGGGT---TTC-------------AATAACCTTCAGGCTGA---------------------ATGCCACTCATACAAATAAGAAGCGTGGAAGCTGAGGGAAGGCCAGTCAGTTGAAGTAGGATGATTCAGCCCACT---CAATATT-------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226255073 389 - 229942017 CAGGATTACAAACGATAGGGGAAAAGATAAGACACTAACAAGTCTTCAGTTTACCAATGATGAAATCAGGGCCCAAGGACTCTGGCAACAGTTGAAAGAATTATGATCATTAAGTT-AAAAAT-GTTTATT--ACTTCTAAATCCTGATACTAAAGT---AACAGCC-CGGCGTACTTCCATGTAGAAATGATGTCATTCTGAAATGGTATAAATAAAAATTATAGTCAATATTCTCATCACGTTCAAGCAGGGCATGGGCCACAAACCCACCTAAGGACCT--------------------------GGGAAGGGCGGGT---TTC-------------AATAGCCTTCAGGCTGA---------------------ATGACACTCATACAAATGAGAAGGATGGAAGCTGAGCGAAGGCCAGTCAGTTGAAGTAGGATGATTCAGCCCACT---CAATATT-------- i ponAbe2.chr1 M 168 C 0 s nomLeu3.chr5 140147576 392 - 143122389 caggatcacaAACGATAGGGGAAAAGATAAGACACTAACAAGTCTTCAGTTTACCAATGATGAAATCAGGGCCCAAGGACTCTGGCAATAGTTGAAAGAATTATGATCAGTAAGTT-AAAAAT-GTTTATT--ACTTCTAAATCCTGATACTAAAGTAACAACAGCC-CAGCGTACTGCCATGTAGAAATGATGTCATTGTGAAATGGTATAAATAAAAATTATAGTCAATATTCTCATCATGTTCAAGCAGGGCATGGGCCACAAACCTACCTAAGGGCCT--------------------------GGGAAGGGTGGGT---TTC-------------AGTAACTTTCAGACTGA---------------------ATGCCACTCATACAAATAAGAAGGATGGAAGCTGAGGGAAGGCCAGTCAGTTGAAGTAGGATGATTCAGCCCACT---CAATATT-------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16861293 389 - 229590362 caggatcacaAACGATAGGGGAAAAGATAAGACACTAACACATCTCCAGTTTACCAATGATGAAATCCGGGCCCAAGGACTCTGGCAATAGTTGAAAGAATTATGATCATCAAATT-AAAAAT-GTTTATT--ACTTCTAAATCCTGACACTAAAGT---AACAACC-CAGCGTATTTCCATGTAGAAATGATGTCATTCTGAAATGGAATAAATAAAAATTATAGTCAATATTCTCATCATGTTCAAGCAGGGCATGGGCCACAAACCCACCTCAGGGCCT--------------------------GGGAAGGGCGGGT---TTC-------------AGTAACCTCCAGGCTGA---------------------CTGCAACTCATACAAATACGAAGGATGGAAGCTGAGGGAAGGCCAGTCAGTTGAAGTAGGATGATTCAGCCCACT---CAATATT-------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223623645 389 - 227556264 caggatcacaAACGATAGGGGAAAAGATAAGACACTAACACATCTCCAGTTTACCAATAATGAAATCAGGGCCCAAGGACTCTGGCAATAGTTGAAAGAATTATGATCATCAAATT-AAAAAT-GTTTATT--ACTTCTAAATCCTGACACTAAAGT---AACAACC-CAGCGTATTTCCATGTAGAAATGATGTCATTCTGAAATGGAATAAATAAAAATTATAGTCAATATTCTCATCATGTTCAAGCAGGGCATGGGCCACAAACCCACCTCAGGGCCT--------------------------GGGAAGGGCGGGT---TTC-------------AGTAACCTTCAGGCTGA---------------------CTGCAACTCATACAAATACGAAGGATGGAAGCTGAGGGAAGGCCAGTCAGTTGAAGTAGGATGATTCAGCCCACT---CAATATT-------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16675331 390 - 220367699 CAGGATCACAAATGATAGGGGAAAAGATAAGACACTAACACATCTCTAGTTTACCAATGATGAAATCAGGGCCCAAGGACTCTGGCAATAGTTGAAAGAATTAtgatcattaaattaaaaaat-gtttatt--acttCTAAATCCTGATACTAAAGT---AACAACC-CAGCGTATTTCCATGTAGAAATGATGTCATTCTGAAATggtgtaaataaaaattatagtcaaTATTCTCATCATGTTCAAGCAGGGCAGGGGCCACAAACCCACCTCAGGGCCT--------------------------GGGAAGGGCGGGT---TTC-------------AGTAACCTTCAGGCTGA---------------------CTGCAACTCATACAAATGGGAAGGATGGAAGCTGAGGGAAGGCCAGTCAGTTGAAGTAGGATGATTCAGCCCACt---caatatt-------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82473745 389 + 85787240 caggatcacaAACGATAGGGGAAAAGATAAGACACTAACACATCTCCAGTTTACCAATGATGAAGTCAGGGCCCAAGGACTCTGGCAATAGTTGAAAGAATTATGATCATTAAATT-AAAAAT-GTTTATG--ACTTCTAAATCCTGATACTAAAGT---AACAACC-CAGCGTATTTCCATGTAGAAATGATGTCATTCTGAAATGGTATAAATAAAAATTATAGTCAATATTCTCATCATGTTCAAGCAGGGCATGGGCCACAAACCCACCTAAAGGCCT--------------------------GGGAAGGGCAGGT---TTC-------------AGTAACCTTCAGGCTGA---------------------CTGCAACTCATACAAATACGAAGGATGGAAGCTGAGGGAAGGCCAGTCAGTTGAAGTAGGATGATTCAGCCCACT---AAATATT-------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14154588 381 - 49578535 cgggatcacaAACTGTAGGGG-GAAGATAAGACACTAA---GTCCTCGGTTTACCGGTGATGAAATCGGGGCCCAAGGACTCTGGCAATGGTTGAAATAAATATAAT---TAAGTT-AGAAAT-GTTTATT--ACTTCTAAATCCTGATAGTAAAGT---ACCAGCC-CTGTAGAGTTCAATGTAGGAATGATGTCATTCTGAAGTGGTTTAAATCAAAGCTCCAGTGAATATTCTCATCATGTT-GAGCAGGGCGCGCATCACAAACCCACCTCGTGGCCT--------------------------GGGATGGGCCGGT---TTC-------------AGGAACCTTCAGGTTGG---------------------ACAAAACTCATGCAAATATGAAGGCTGTAAGCCGAGGGAAGGCCAACCAGTTGAAGTAGGATGATTCAGCCGACT---CAGTATT-------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178743219 399 + 195471971 AAGGATCATAGACCAGAGGTGAAAACCCGAGGTCCTGTCCACTCTCTAGTTTGTATTTGATGAGTATGAAGCTCATCAACTTTAGCAACAGTCAAAATTACTGTGGTCACAAAGTT-AAAAACAAATTACTCCACTTCTTAGTTCTGACTC---AGT---CACAGCC----------TCCTTG----AATGGTAACATTTTCAAACTGGGCA----------------AATATCCTCAACATGTTCAAGTAGGG-ATAGGCTACAAACCCAGCCAAGAGCTTACATGTTCAGGTCCAGGTAAGCTTTGGGAAAAAGATGGT---ACCTCCTAGGATTTAAAGTGACCCTT-GGCTGA---------------------ATACATCTCATACAGATTTGGAAGATGTAAGTTGGAGGAAGGCCAGTTGGCTGAGG-AGGAGGATTCAACTTATTTTCCATAATT-------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36319434 414 + 80974532 cagaatcacaAACTATAAGGGAAAACTTGAAATTCTAACAAGTcctcaatttacaaatggtgaaactaaggcccaaggaCTTTGGAAGAAGTTGAAGTAATTATGCTCATTAAATT-AAAAAT-GTTGATT--ACTTCTATGTACTGA---TAAAGT---AACAGCCTTGGTGTATTTCAGTG--GAAATGGTATCATTCTGAAATTGTGTGAGTAAAAATG--AGTGAATAGCCATATGGTGTACAAGTATCACATGGGCCACACATCTACCCAAGGGCTT--------------------------GGGATGGATGGGCAGGCTA-------------GGTAGGCTGTGGGCTGAGAATGGTATCCTGTTAGGGGTCTGGAACTCATATTGATACAAAGGACGTGTGCTGAAGGAAGGCCAGTCAGTCCAAGTAGGATGATTCAACTTACT---CAA-ATAGAGGAGCT i canFam3.chr7 C 0 C 0 a score=477679.000000 s hg38.chr1_KI270759v1_alt 148405 144 + 425601 TGAAATATTGGTTTTAATGAGATCCTAGGGCTCCATTTTAGAGCTACTAGAAGTTTTATGAGTGAAGAAGGGAGCTGTTTTACTGCACT-----ATACAG---AGTCTCCTTATCTTTCCCTTTTGTCATTCTTGCCATAACCTTATAGCCT s panTro4.chr1 224900078 144 + 228333871 TGAAATATTGGTTTTAATGAGATCCTAGGGCTCCATTTTAGAGCTACTAGAAGTTTTATGAGCGAAGAAGGGAGCTGTTTTACTGCACT-----ATACAG---AGTCTCCTTATCTTTCCCTTTTGTCATTCTTGCCATAACCTTATAGCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226255462 144 - 229942017 TGAAATATTGGTTTTAATGAGATCCTAGGGCTCCATTTTAGAGCTACTAGAAGTTTTATGAGTGAAGAAGGGAGCTGTTTTACTGCACT-----ATACAG---AGTCTCCTTATCTTTCCCTTTTGTCATTCTTGCCATAACCTTATAGCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140147968 144 - 143122389 TGAAATATTGGTTTTAATGAGATCCTAGGGCTCCATTTTAGAGCTACTAGAACTTTCATAAGTGAAGAAGGGAGCTGTTTTACTGCACT-----ATACAG---AGTCTCCTTATCTTTCCCTTTTGTCATTCTTGCCATAACCTTATAGCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16861682 144 - 229590362 TGAAATATTGTTTTTAATGAGATCCTAGGGCTCCATTTCAGAGCTACTAGAAGTTTTATGAGTGAAGAAGGGAGTTGTTTTACTGCACT-----ATACAG---AGTCTCCTTATCTTTCCCTTTTGTCATTCTTGCCATAACCTTATAGCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223624034 144 - 227556264 TGAAATATTGTTTTTAATGAGATCCTAGGGCTCCATTTCAGAGCTACTAGAAGTTTTATGAGTGAAGAAGGGAGTTGTTTTACTGCACT-----ATACAG---AGTCTCCTTATCTTTCCCTTTTGTCATTCTTGCCATAACCTTATAGCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16675721 144 - 220367699 tgaaatattgtttCTAATGAGATCCTAGGGCTCCATTTCAGAGCTACTAGAAGTTTTATGAGTGAAGAAGGGAGTTGTTTTACTGCACT-----ATATAG---AGTCTCCTTATCTTTCCCTTTTGTCATTCTTGCCATAACCTTATAGCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82474134 144 + 85787240 TGAAATATTGTTTTTAATGAGATCCTAGGGCTCCATTTCAGAGCTACTAGAAGTTTTATGAGTGAAGAAGGGAGTTGTTTTACTGCACT-----ATACAG---AGTCTCCTTATCTTTCCCTTTTGTCATTCCTGCCATAACCTTATAGCCT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178743618 138 + 195471971 TGAGA---TGTTTTTAGTAAGATTCT-GAGTTCCTTTT---AACTGCCATAAGTTCTATGAGTGAAGGCCG----TATTTTATTGCTCTATAAAATATAG---AGTCTCTTTACAGTTTGTTCTTGGGATTCTTGCTATAACTCTATACCCT i mm10.chr1 C 0 I 491 s canFam3.chr7 36319848 146 + 80974532 TGAAATTTTGGTTTTAACAAGATCCTGGGCCTCCTTTTT-GAGCTCCTAGAAGCTTTCTGTGTGAGGAAGGGAGCTGTTTCACCGCACT-----TCACAGAGTAGTCTCCTTATTTTTCCCTCTTGTACTTCTTACCATAACCTTATAGCCT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14154969 0 - 49578535 C a score=11148.000000 s hg38.chr1_KI270759v1_alt 148549 5 + 425601 CTAAC s panTro4.chr1 224900222 5 + 228333871 CTAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226255606 5 - 229942017 CTAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140148112 5 - 143122389 CTAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16861826 5 - 229590362 CTAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223624178 5 - 227556264 CTAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16675865 5 - 220367699 CTAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82474278 5 + 85787240 CTAAC i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36319994 4 + 80974532 CTCA- i canFam3.chr7 C 0 C 0 e mm10.chr1 178743756 491 + 195471971 I e calJac3.chr19 14154969 0 - 49578535 C a score=271492.000000 s hg38.chr1_KI270759v1_alt 148554 83 + 425601 TTAATCAGCCTGGCTTCCTTCACGTAATACAGCAGCACTTAACATTGCCTTCTTACTTTTCTTCTAAGTAGTTCTAGTTTCTA s panTro4.chr1 224900227 83 + 228333871 TTAATCAGCCTGGCTTCCTTCATGTAATACAGCAGCACTTAACGTTGCCTTCTTACTTTTCTTCTAAGTAGTTCTTGTTTCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226255611 83 - 229942017 TTAATCAGCCTGGCTTCCTTCACGTAATACAGCAGCACTTAACATTGCCTTCTTACTTTTCTTCCAAGTAGTTCTTGGTTCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140148117 83 - 143122389 TTAATCAGCCTGGCTTCCTTCACGTAATACAGCAGCACTTAACATTGCCTTCTTACTTTTCCTCTAAGTAGTTCTTGTTTCTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16861831 83 - 229590362 TTAATCAGCCTGGCTTCCTTCAAGTAATACAGCAGCACTTAACGTTGCCTTCTTACTTTTCTTCTAAGTAGTTCTTGTTTCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223624183 83 - 227556264 TTAATCAGCCTGGCTTCCTTCAAGTAATACAGCAGCACTTAACGTTGCCTTCTTACTTTTCTTCTAAGTAGTTCTTGTTTCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16675870 83 - 220367699 TTAATCAGCCTGGCTTCCTTCAAGTAATACAGCAGCACTTAACgttgccttctttcttttcttctaagtaGTTCTTGTTCCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82474283 83 + 85787240 TTAATCAGCCTGGCTTCCTTCAAGTAATACAGCAGCACTTAACATTGCCTTCTTACTTTTCTTCTAAGTAGTTCTTGTTTCTG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178744247 83 + 195471971 TTAATCAGCCTGGGTGCATTCAAGCAGTTGGGCTGTACTTGAGGCTACAGTCTTAGTTTTCCTCTCAACAGTTCTCGCATCTG i mm10.chr1 I 491 C 0 s canFam3.chr7 36319998 83 + 80974532 TTAACTCTCCTGCCTTCATTCAAGTGGTTGAGCAACATTCAAGACTGCCTTCTTACTTTTCTCCTAAGTAGTTCTTATGTCTG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14154969 0 - 49578535 C a score=2784808.000000 s hg38.chr1_KI270759v1_alt 148637 754 + 425601 --TGTCTGAGCATCCAGGGAGGTAAATGCAAAGAAGGATGGAAATAAAATATGGCTCAGCTGTGGCCTGAGCAGCCCCTTCCAAATGCACTC-ACGGCTT--CTCTGCACATCTTGA--TATGTGAATGGGAAAGA---AAAAAAAGCACATTTTGGTCCAGCAGGTTTTCTTCCCTTTGTCTCCCTCTGAGGTGCTCAGAGGCATCAGTAACAGAGCAGG-AAGGCCCTGG-CCAACAAACCTTAGC-CTTTTCCTTTGA-TACCTTCCATTGGGAGCCTTCATACAATGCATTTGAAAGCACTTTGTCAGCAGACTCCTGCTTCAGGCAAACATTGAGAAAACTATTGAGGAGGCCTCAATGGAAAGGATCTGATCTGCCCCAGAAACTGCCCTAGTTCTCTGGCAGGAGAGCCACCAGCAGGAGAAGAGAAGTCCTCTCTCCTACCCCA-------TTTTTTTTCTTTCTCCTTTTTCCTCTCCTTTCTATTGTAAGAATTGTGGGAACTCTCTTTAAATGAAAATAACTCTCAGGCTGAGCTTTGTCTCCCAATGTGGATAAATGCCCAGATATCT---------CATATCCCCTCT-GTAAAGCTGGAGTCTCAGTTTTGGATGATCACAAAC-TATTTGGGACAAATGTTTGAGCTCAAGGAGAAACACATGGTAGGTGGTGTGTGCATAGCTTTTTCTAAAGCACCTAAAAATTGAATACTTGTTCATCAGCCTACTGCTTGCAAGCCCTTTGCTACC-ACTTGCTGGTCTGT-----------------------------TGTTTGC--- s panTro4.chr1 224900310 739 + 228333871 --TGTCTGAGCATCCAGGGAGGTAAATGCAAAGAAGGATGGAAATAAAATATGGCTCAGCTGTGGCCTGAGCAGCCCCTTCCAAATGCACTC-GCGGCTT--CTCTGCACATCTTGA--TATGTGAATGGGAAAGG---AGAAAAAGCACATTTTGGTCCAGCAGATTTTCTTCCCTTTGTCTCCCTCTGAGGTGCTCAGAGGCATCAGTAACAGAGCAGG-AAAGCCCTGGCCCAACAAACCTTAGC-CTTTTCCTTTGA-TACCTTCCACTGGGAGCCTTCATACAATGCATTTGAAAGCACTTTGTCGGCAGACTCCTGCTTCAGGCAAACATTGAGAAAACTATTGAGGAGGCCTCAATGGAAAGGATCTGATCTGCCCCAGAAACTGCCCTAGTTCTCTGGCAGGAGAGCCACCAGCAGGAGAAGAGAAATCCTCTCTCCTACCC-----------------------CCTTTTTCCTCTCCTTTCTATTGTAAGAATTGTGGGAACTCTCTTTAAATGAAAATAACTCTCAGGCTGAGCTTTGTCTCCCAATGTGGATAAATGCCCAGATATCT---------CATATCCCCTCT-GTAAAGCTGGAGTCTCAATTTTGGATGATCACAAAC-TATTTGGGACAAATGTTTGAGCTCAAGGAGAAACACATGGTAGGTGGTGTGTGCATAGCTTTTTCTAAAGCACCTAAAAATTGAATACTTGTTCATCAGCCTACTGCTTGCGAGCACTTTGCTACC-ACTTGCTGGTCTGT-----------------------------TGTTTGC--- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226255694 785 - 229942017 --TGTCTGAGCATCCAGGGAGGTAAATGCAAAGAAGGATGGAAATAAAATATGGCTCAGCTGTGGCCTGAGCAGCCCCTTCCAAATGCACTC-ACGGCTT--CTCTGCACATCTTGA--TACGTGAATGGGAAAGG--AAAAAAAAGCACATTTCGGTCCAGCGGGTTTTCTTCCCTTTGTCTCCCTCTGAGGTGCTCAGAGGCATCAGTAACAGAGCAGG-AAAGCCCTGGCAGAACAAACCTTAGC-CTTTTCCTTTGA-TACTTTCCATTGGGAGCCTTCATACAATGCATTTGAAAGCACTTTGTCAGCAGACTCCTGCTTCAGGCAAACATTGAGAAAACTATTGAGGAGACCTCAATGGAAAGGATCTGATCTGCCCCAGAAACTGCCCTAGTTCTCTGGCAGGAGATCCACCAGCAGGAGAAGAGAAGTCCTCTCTCCTACCCCA-------TTTTTTTTCTTTCTCCTTTTTCCTCTCCTTTCTATTGTAAGGATTGTGGGAACTCTCTTTAAATGAAAATAACTCTCAGGCTGAGCTTTGTCTCCCAATGTGGATAAATGCCCGGGTATCT---------CATATCCCCTCT-GTAAAGCTGGAGTCTCAATTTTGGATGATCACAAAC-TATTTGGGATAAATGTTTGAGCTCAAGGAGAAACACATGGTAGGTAGTGTGTGCGTAGCTTTTTCTAAAGCACCTAAAAATTGAATACTTGTTCATCAGCCTACTGCTTGCGAGCCCCTTGCTACC-ACTTGCTGGTCTGTTTGTGCCTCTGCAGGCTGGCTCTGTGTCGTGTTTGC--- i ponAbe2.chr1 C 0 I 53 s nomLeu3.chr5 140148200 755 - 143122389 --TGTCTGAGCATCGAGGGAGGTAAATGCAAAGAAGGATGGAAATAAAATATGGCTCAGCTGTGGCCTGAGCAGCCCCTTCCAAATGCACTC-ACGGCTT--CTCTGCACATCTTGA--TACGTGAATGGGAAATT---TAAAAAAGCACATTTTGGTCCAGCAGGTTTTCTTCCCTTTGTCTCCCTCTGAGGTGCTCAGAGGCATCAGTAACAGAGCAGG-AAAGCCCTGGCCGAACAAACCTTAGC-CTTTTCCTTTGA-TACCTTCCACTGGGAGCCTTCACACAATGCATTTGAAAGCACTTTGTCAGCAGAATCCTGCTTCAGGCAAACATTGAGAAAACTATTGAGGAGGCCTCAATGGAAAGGATCTGATCTGCCCCAGAAACTGCCCTAGTTCTCTGGCAGGAGAGCCACCAGCAGGAGAAGAGAAGTCCTCTCTCCTACCCCA-------TTTCTTTTCATTCTCCTTTTTCCTCTCCTTTCTATTGTAAGAATTGTGGGAACTCTCTTTAAATGAAAATAACTCTCAGGCTGAGCTTTGTCTCCCAATGTGGATAAATGCCCAGATATCT---------CATCTCCCCTCT-GTGAAGCTGGAGTCTCAATTTGGGATGATCACAAAC-TATGTGGGACAAATGTTTGAGCTCAAGGAGAAACACATGGTAGGTGGTGTGTGTGTAGCTTTTTCTAAAGCACCTACAAATTTCATACTTGTTCATCAGCCTACTGCTTGCGAGCCCTTTGCTACC-ACTTGCTGGTCTGT-----------------------------TGTTTGC--- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16861914 756 - 229590362 --TGTCTGAGCATCTAGAGAGGTAAATGCAAACGAGGATGGAAATAAAATATGGCTCAGCTGTGGCCTGAGCAGCCCCTTCCAAATGCACTC-ACGGCTT--CTCTGCACATCTTGA--TACGTGAATGGGAAAG----AAAAAAAGCACATTTTGGTCCAGCTGGTTTTCTTCCCTTTGTCTCCCTCTGAGGTGCTCAGAGGCATCAGTAACAGAGTAGG-AAAGCCCCGGCCGAACAAACCTTCAC-CTTTTCCTTTGA-TACCTTCCACTGGGAGCCTTCATACAATGCATTTGAAAGCACTTTGTCAGCAAACTCCTGCTTCAGGCAAACATTGAGAAAACTATTGAGGAGGCCTCAATGGAAAGGATCTGATCTGCCCCAGAAACTGCCCTAGTTCTCTCGCAGGAGAGCCACCAGCAGGAGAAGAGAAGTCCTCTCTCCTACCCCAA-----TTTTTTTTTCTTTCTCCTTTTTCCTCTCCTCTCTATTGTAAGAATTGTGGGAACTCTCTGTAAATGAAAATAACTCTCAGGCTGAGCTTTGTCTCCCAATGTGGACAAATGCCCAGACATCT---------CATATCCCCTCT-GGAAAACTGGACTCTCAACTTTGGATGATCACAAAC-TATTTGGGGCAAGCGTTTGAGCTCAAGGAGAAACACATGGTAGGTGTTGTGTGCGTAGCTTTTTCTAAAGCACCTGAACATTGAATACTTGTTCATCAACCTACTGCTTCCGAGTCCTTTGCTACC-ACTTGCTGGTCTGT-----------------------------TGTTTGC--- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223624266 756 - 227556264 --TGTCTGAGCATCTAGGGAGGTAAATGCAAACGAGGATGGAAATAAAATATGGCTCAGCTGTGGCCTGAGCAGCCCCTTCCAAATGCACTC-ACGGCTT--CTCTGCACATCTTGA--TACGTGAATGGGAAAG----AAAAAAAGCACATTTTGGTCCAGCTGGTTTTCTTCCCTTTGTCTCCCTCTGAGGTGCTCAGAGGCATCAGTAACAGAGTAGG-AAAGCCCCGGCCGAACAAACCTTCAC-CTTTTCCTTTGA-TACCTTCCACTGGGAGCCTTCATACAATGCATTTGAAAGCACTTTGTCAGCAAACTCCTGCTTCAGGCAAACATTGAGAAAACTATTGAGGAGGCCTCAATGGAAAGGATCTGATCTGCCCCAGAAACTGCCCTAGTTCTCTCGCAGGAGAGCCACCAGCAGGAGAAGAGAAGTCCTCTCTCCTACCCCAA-----TTTTTTTTTCTTTCTCCTTTTTCCTCTCCTCTCTATTGTAAGAATTGTGGGAACTCTCTGTAAATGAAAATAACTCTCAGGCTGAGCTTTGTCTCCCAATGTGGACAAATGCCCAGACATCT---------CATATCCCCTCT-GGAAAACTGGACTCTCAACTTTGGATGATCACAAAC-TATTTGGGGCAAGTGTTTGAGCTCAAGGAGAAACACATGGTAGGTGTTGTGTGCGTAGCTTTTTCTAAAGCACCTGAACATTGAATACTTGTTCATCAACCTACTGCTTCCGAGTCCTTTGCTACC-ACTTGCTGGTCTGT-----------------------------TGTTTGC--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16675953 757 - 220367699 --TGTCTGAGCATCTAGGGAGGTAAATGCAGACGAGGATGGAAATAAAATATGGCTCAGCTGTGACCTGAGCAGCCCCTTCCAAATGCACTCAACGGCTT--CTCTGCACATCTTGA--TATgtgaatgggaaag----aaaaaaagcacattttGGTCCAGCTGGTTTTCTTCCCTTTGTCTCCCTCTGAGGTGCTCAGAGGCATCAGTAACAGAGTAGG-AAAGCCCCGGCCGAACAAACCTTCAC-CTTTTCCTTTGA-TACCTTCCACTGGGAGCCTTCATACAATGCATTTGAAAGCACTTTGTCAGCAAACTCCTGCTTCAGGCAAACATTGAGAAAACTATTGAGGAGGCCTCAATGGAAAGGATCTGATCTGTCCCAGAAACTGCCCTAGTTCTCTCGCAGGAGAGCCACCAGCAGGAGAAGAGAAGTCCTCTCTCCtaccccaa-----tttttttttctttctcctttttcctcccctCTCTATTGTAAGAATTGTGGGAACTCTCTGTAAATGAAAATAACTCTCAGGCTGAGCTTTGTCTCCCAATGTGGACAAATGCCCAGACATCT---------CATATCCCCTCT-GGAAAACTGGACTCTCAACTTTGGATGATCACAAAC-TATTTGGGGCAAGCGTTTGAGCTCAAGGAGAAACACATGGTAGGTGTTGTGTGCGTAGCTTTTTCTAAAGCACCTGAACATTGAATACTTGTTCATCAACCTACTGCTTCCGAGTCCTTTGCTACC-ACTTGCTGGTCTGT-----------------------------TGTTTGC--- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82474366 757 + 85787240 --TGTCTGAGCATCTAGGGAGGTAAATGCAAACGAGGATGGAAATAAAATATGGCTCAGCTGTGACCTGAGCAGCCCCTTCCAAATGCACTC-ACGGCTT--CTCTGCACATCTTGA--TACGTGAATGGGAAAG----AAAAAAAGCACATTTTGGTCCAGCTGGTTTTCTTCCCTTTGTCTCCCTCTGAGGTGCTCAGAGGCATCAGTAACAGAGTAGG-AAAGCCCAGGCAGAACAAACCTTCAC-CTTTTCCTTTGATTACCTTCCACTGGGAACCTTCATACAATGCATTTGAAAGCACTTTGTCAGCAAACTCCTGCTTCAGGCAAGCATTGAGAAAACTATTGAGGAGGCCTCAATGGAAAGGATCTGATCTGCCCCAGAAACTGCCCTAGTTCTCTCGCAGGAGAGCCACCAGCAGAAGAAGAGAAGTCCTCTCTCCTACCCCAA-----TTTTTTTTTCTTTCTCCTTTTTCCTCTCCTTTCTATTGTAAGAATTGTGGGAACTCTCTGTAAATGAAAATAACTCTCAGGCTGAGCTTTGTCTCCCAATGTGGACAAATGCCCAGACATCT---------CATATCCCCTCT-GTAAAACTGGACTCTCAACTTTGGATGATCACAAAC-TATTTGGGGCAAGCGTTTGAGCTCAAGGAGAAACACATGGTAGGTGTTGTGTGCGTAGCTTTTTCTAAAGCCCCTAAACATTGAATACTTGTTCATCAACCTACCACTTCCGAGTCCTTTGCTACC-ACTTGCTGGTCTGT-----------------------------TGTTTGC--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14154969 748 - 49578535 --TGTCTGAGCATCCAGGGAGGTGAATGCGAAGAAAGGTGGAAATAAAATACGGCTCAGCTGTGGTCTGAGCGGCCCCTTCCAGGCGCACTC-ATGGCCTCCCTCTGCGCATCTTGA--TATGTGAATGGGAAAG----GAAGAAAGCACCTTTTGGTCCAGCAGATTTTCTCCCCTTTGTGTCCCTCCGAGGTGCTCAAAGGCATCAGTACCAGAGCGGG-AGAGCCCTGGCTGAACAAACCCTAGT-GTTTTCCTTCGA-TACCTTCCACTGGGAGCCTTCATACAATGCGTTTGAAAGCACTTTGTCAGCAAACTCCTGCTTCAGGCAAACATTGAGAAGACTATTGAGGAGGACTCAGTGGGAAGGATCTGACCTACCCTAGAAACTGCCCCAGTTCTCTATCAGGAGAGCCGCCAGCCCTAGGAGAGAGGTCCTCTCCCCTCTCCAG-----------------------TTTTTTCTCTCCTTTCTATTGTAAGAATTGTGGGAACTCTCTTTAAATGAAAATAACTCTCAAGCCGAGCTTTGTCTCCTAACGCGGATAAATGCCTAGATATCCGCGTTAGGAGACATCCCTTCT-GCAGAACTGGAGTCTCAACGTTGGATTAGCAC-AAC-TATTTGGGACAAACATTTGAGCTGAAGGAGAAATACGTGGTAGGTGTTGTGTGTGTCTCTTTTTCTAAAACACCTACGAATTGCGTCCTTGCTCATCAGCCTGCTGTTCGGGAGTCCTGTGCTGTC-ACTTGCTGCTCTGT-----------------------------TGTTTGC--- i calJac3.chr19 C 0 C 0 s mm10.chr1 178744330 650 + 195471971 --TGTTTGAGCATCTAGGGAAGTGAAGCTGAAGAAG--TGGAAATCAAACCCGGCTGGGGTTTGGCCTCACCTGCCCCTCCCCAGTGCATTC--CTGCTT--CTCACTGCACGTTGACTTCCGTGAACAGGGAA-----GAGAAGGGCACAAGCTGGCCCAGAAAGTCTCCTT-CCTTTGTTTCCCTCTGAGGTGCTCAAAAGCATCAATAACAGTGTGGG-AAAGCCCTGGCTGAACAGAACTTCGCAGGTCCCCCTTGA-TACCTTCCACTGGGAGCCTCCACACAATGCCTTAGAAAGCGCTCTGTCAGCCAACTGCTGCTTCAGGCAAGCGTGGAGGTAGCCTCTGAGGAGTCCTCGGTGGGAAAGACCTGCCCTGCCCCAGAAACTGCCCTAGTTCTCAGCCAGCAGGCTCCTCTGCAGGAGAGAAGCACCCCTC-----------AG-----GTTTTGATT-----TCCTTTTCCCTCTCCCTTCTGTCCTTAGGACCAGGGAAACTCTC---------------------AGCGGGGCTTGGCTTTCTAACAAGCATCAATGCCTAGGTAGCT---------CACGTTCCCTTG-GTAGAGACAAAGTCTCTGCGTTAGGAGTT----GCT-TAGCTGTGCCTTCCATTTGAGGTTAAGAAAAAA------AGAGATGCTGGATATTTAGATCTGTCTA--------------------CTTGTT------------------------TCTGTTATC-TTGagctg--------------------------------------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36320081 750 + 80974532 TGTCTTTGAGCATCTAGGGAGGTAAATGTGAAGACGGGTGGAAATAAAATATGGCTTGGTGTGGGCCCTCCCAGCCCCTTCCAGAAGCATTC-A--------TGCTGCACATCTTGT--TCTGTGAATGGGAAGGGGGGAAAGAAAGCCCATTTTGGTCCAGCGGGTTTTCTTCCCTTTGTCTCTTTCTGAGGTGCTCAAAGGCATCAGTAACAGAGCAGGAAAAGCCCTGGCTGAACAAAACTTCGT-ATTTTCCTTTGA-TACCCTCCACTGGGAGGCCTCCTACAAT----------GCACTTTGTCAGCAAGCTCCTGCTTCAGGCAAACGTTGAGAAAACTATTGAGGAGGTCTCAAT-GAAAAGATCTGATCTGCCCTAGAAACTGCCCCAGTTCTCTCTCC-CAGCGCCACCAGCAGTGGGAGAGAAGG--TGGCCCCCACCCTGAAATGGTCTTTCTTTCTTTGTCCTTTCTTCTCTCCTTTCTATTGTAAGAATTGTGGGAACTCTCTTTAAGTGAAAATCACTCTCAAGCTGGGCTTTGTTTGCCAACATGGATAAATGCCTAGAGATCT---------CATATCCACTGTGGTAAAACTGGAGTCTCAACTTTAGATTATAACGAACTTATTTGGGACAGACATTTGAGTTCAAGGTGGAATAAGCAGTAGGGTGTGTGTGTATGGCTTTT--CAAATCATCTAGAAATTGAATAGTTGTGCCTCAAA--ACTGCTCAGGAGCCTTCTGCTCCCTACTTGCTGGTCTGT-----------------------------CACTTGTCAC i canFam3.chr7 C 0 C 0 a score=8881.000000 s hg38.chr1_KI270759v1_alt 149391 4 + 425601 GCCT s panTro4.chr1 224901049 4 + 228333871 ACCT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140148955 4 - 143122389 GCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16862670 4 - 229590362 GCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223625022 4 - 227556264 GCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16676710 4 - 220367699 GCAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82475123 4 + 85787240 GCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14155717 4 - 49578535 GCCG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36320831 4 + 80974532 ACCT i canFam3.chr7 C 0 C 0 e mm10.chr1 178744980 0 + 195471971 C e ponAbe2.chr1 226256479 53 - 229942017 I a score=337201.000000 s hg38.chr1_KI270759v1_alt 149395 109 + 425601 CTGC---AGGCTGGCTCTGTGTCATGTTTGCATTGGTATCCGATCTCTCCCTGCACCACCCCTTGCTCGATTTTAATTGAATTTAATGATTTCTGAACCCCTAAGCGTCTAT s panTro4.chr1 224901053 109 + 228333871 CTGC---AGGCTGGCTCTGTGTCGTGTTTGCATTGGTATCCGATCTCTCCCTGCACCACCCCTTGCTCGATTTTAATTGAATTTAATGATTTCTGAACCCCTAAGCGTCTAT i panTro4.chr1 C 0 M 1210 s ponAbe2.chr1 226256532 109 - 229942017 CTGC---AGGCTGGCTCTGTGTTGTGTTTGCATTGGTGTCCGATCTCTCCCTGCACCACCCCTTGCTCGATTTTAATTGAATTTAATGATTTCTGAACCCCTGAACGTCTAT i ponAbe2.chr1 I 53 C 0 s nomLeu3.chr5 140148959 109 - 143122389 CTGC---AGGCTGGCTCTGTGTCGTGTTTGCATCGGTATCCGATCTCTCCCTGCACCACCCCTTGCTCGATTTTAATTGAATTTAATGATTTCTGAACCCCTGAGGGTCTAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16862674 109 - 229590362 CTGC---AGGCTGCCTCTGCATCGTGTTCGCATTGGTATCCGATCTCTCCCTGCACCACCCCTTGCGCAATTTTAATTGAATTTAATGATTTCTGAACCCCTCAGCATCTAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223625026 109 - 227556264 CTGC---AGGCTGCCTCTGCGTCGTGTTCGCATTGGTATCCGATCTCTCCCTGCACCACCCCTTGCGCAATTTTAATTGAATTTAATGATTTCTGAACCCCTCAGCGTCTAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16676714 109 - 220367699 CTGC---AGGCTGGCTCTGCGTCGTGTTCACATTGGTATCGGATCTCTCCCTGCACCACCCCTTGCgcaattttaattgaatttaatgATTTCTGAACCCCTCAGCGtctat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82475127 109 + 85787240 CTGC---AGGCTGCCTCTGTGTCGTGTTCGCATGGGTATCCGATCTCTCCCTGCACCACCCCTTGCGCAATTTTAATTGAATTTAATGATTTCTGAACCCCTCAGCGTCTAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14155721 83 - 49578535 CTGC---AGGCTGGCTCTGTGTCGTATTTGCACTGGTATCTGAT--------------------------TTTTAATTGAATTTAATGATTTCTGATCCCCTGAGCATCTAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178744980 76 + 195471971 -------aggctggcc----------------------tccga-ctcattatg---taacccaggctggccttagatttttgttttttgttttttaatacttatgcttc--- i mm10.chr1 C 0 C 0 s canFam3.chr7 36320835 109 + 80974532 CTGCACGAGGCTGACTCTGTACCACATTTGCATTGGTATCCAATGCCTTGC--CACCACCCCTTGCTTGGTTTTCACTGGATTAAGT-ATTTCTGAACCCCTGAACATCTAT i canFam3.chr7 C 0 C 0 a score=49731.000000 s hg38.chr1_KI270759v1_alt 149504 16 + 425601 CACTTTTTAAAATCCA s ponAbe2.chr1 226256641 16 - 229942017 CACTTTCTAAAATCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140149068 16 - 143122389 CACTTTTTAAAGTCCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16862783 16 - 229590362 CACTTTTTAAAATCCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223625135 16 - 227556264 CACTTTTTAAAATCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16676823 16 - 220367699 cactttttaaaatcca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82475236 16 + 85787240 CACTGTTTAAAATCCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14155804 16 - 49578535 TACTTTTTAAAAACCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178745056 16 + 195471971 cacttcccaagagctg i mm10.chr1 C 0 I 203 s canFam3.chr7 36320944 16 + 80974532 CACTTTTTAGAAACCA i canFam3.chr7 C 0 C 0 e panTro4.chr1 224901162 1210 + 228333871 M a score=14029.000000 s hg38.chr1_KI270759v1_alt 149520 5 + 425601 TACTA s ponAbe2.chr1 226256657 5 - 229942017 TACTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140149084 5 - 143122389 TACTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16862799 5 - 229590362 TACTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223625151 5 - 227556264 CACTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16676839 5 - 220367699 tacta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82475252 5 + 85787240 TACTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14155820 5 - 49578535 TGCTA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36320960 5 + 80974532 TGCTA i canFam3.chr7 C 0 C 0 e mm10.chr1 178745072 203 + 195471971 I e panTro4.chr1 224901162 1210 + 228333871 M a score=539253.000000 s hg38.chr1_KI270759v1_alt 149525 236 + 425601 C-Aggccgggcatggtggctcacgcccgtaatccgagcactttgggaggctgaggcgggcagatcacgaggtcaagagatcgagaccatcctggccaacatggtgaaaccccatctctactaaaaatac-aaaaattagctggggatggttacacgtgcctatagtcccagctactcgggaggctgaggcaggagagtcgcttgaacccgggaggcggaggttgc-agtgagtcgagat s ponAbe2.chr1 226256662 236 - 229942017 C-Aggctggtcgtggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaagagatcgagaccatcctggccaacatggtaaaaccccatctctactaaaaatac-aaaaattagctgggcatggttgctcgtgcctatagtcccagctactcgggaggctgaggcaggagagtcgcttgaacccgggaggcggaggttgc-agtgagccgagat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140149089 236 - 143122389 C-Aggctgggcgtggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaagagatcaagaccatcctggccaacatggtgaaaccccatctctactaaaaatac-aaaaattagctgggcgtgattgcgcgtgtctatagtcccagctactcgggaggctgaggcgggagagtcgcttgaacccgggaggcggaggttgc-agtgagctgagat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16862804 236 - 229590362 C-Aggctgggtgtggtggctctcacctgtaatcccagaactttgggaggctgaggcaggcagatcacgaggtcaagagatcgagatcatcctggccaacatggtgaaaccccgtctctactaaaaatac-aacaattagctggccgtggttgcatgtgcctatagtcccagctactcaggaggctgaggcaggagagttgcttgaacccgggaagcagaggttgc-agtgagccgaggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223625156 236 - 227556264 C-Aggctgggtgtggtggctcacacctgtaatcccagaactttgggaggctgaggcaggcagatcacgaggtcaagagatcgagatcatcctggccaacgtggtgaaaccccgtctctactaaaaatac-aacaattagctggccgtggttgcatgtgcctatagtcccagctactcaggaggctgaggcaggagagttgcttgaacccgggaagcagaggttgc-agtgagccgaggt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16676844 235 - 220367699 c-aggccgggtttggtggctcacacctgggat-tcagaactttgggaggctgaggcgggcagatcacgaggtcaagagatcgagatcatcctggccaacatggtgaaaccccgtctctactaaaaatac-aaaaattagctgggcgtggttgcatgtgcctatagtcccagctactcaggaggctgaggcaggagagttgcttgaacccgggaagcagaggttgc-agtgagccgaggt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82475257 236 + 85787240 C-Aggccgggtgtggtggctcacacctgtaatcccagaactttgggaggctgaggcaggcagatcacgaggtcaagagatcgagatcatcctggccaacatggtgaaaccctgtctctactaaaaatac-aaaaattagctgggcgtggttgcatgtgcctatagtcccagctactcaggaggctgaggcaggagagttgcttgaacctgggaagcagaggttgc-agtgagccgaggt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14155825 238 - 49578535 CAAggccgggcatggtggcccacgcctgtaatcccagcactttgggaggccaatgggggtggatcacgaggtcaagagatcaagaccatcctggtcaacatggtgaaaccccgtctctactaaaaatacaaaaaattagctgggtatagtggcgcgtgcctgtagtcccagctactc-tgaggctgaggcaggagaaatgcctgaacccgggaagcggaggttgcaagtgagccaagat i calJac3.chr19 C 0 I 874 e mm10.chr1 178745072 203 + 195471971 I e canFam3.chr7 36320965 0 + 80974532 C e panTro4.chr1 224901162 1210 + 228333871 M a score=88006.000000 s hg38.chr1_KI270759v1_alt 149761 79 + 425601 cacaccactgctctccagcct-ggtgacagagtgagatctgtctgaaaaaaa-caaaacaaacaaacaaaaaacaaCACAC s ponAbe2.chr1 226256898 68 - 229942017 cgcgccactgcactccagcct-ggtgacagagtgagatctgtctgaaaaaaa-aacaataaaaaaacaaa----------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140149325 73 - 143122389 cacaccactgcactccagcct-ggtgacagagtgagatctgtctgaaaacaa-acaaacaaacaaaaaaa------caaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16863040 71 - 229590362 catgccaccacactccagcctgggtgacagagtgagatctgtctcaaaaaaacaaaaacaaaaacaaaaa----------c i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223625392 71 - 227556264 catgccaccacactccagcctgggtgacagagtgagatctgtctcaaaaaaacaaaaacaaaaacaaaaa----------c i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16677079 71 - 220367699 cgtgccaccacactccagcctgggtggcagagtgagatctgtcttaaaaaaagaaaaacaaaaacaaaaa----------c i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82475493 65 + 85787240 cgtgccaccacactccagcctgggtgacagagtgagatctgtctcaa------aaaaacaaaaacaaaaa----------c i chlSab2.chr25 C 0 C 0 e mm10.chr1 178745072 203 + 195471971 I e canFam3.chr7 36320965 0 + 80974532 C e calJac3.chr19 14156063 874 - 49578535 I e panTro4.chr1 224901162 1210 + 228333871 M a score=18197.000000 s hg38.chr1_KI270759v1_alt 149840 14 + 425601 AAAAAAACATACTG s ponAbe2.chr1 226256966 11 - 229942017 aaaaaaacaTA--- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140149398 14 - 143122389 aaaaaCCCATACTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16863111 14 - 229590362 aaaaaAACATGCTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223625463 14 - 227556264 aaaaaAACATGCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16677150 14 - 220367699 aaaaaaacatgcta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82475558 14 + 85787240 aaaaaaaTGTGCTA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178745275 14 + 195471971 AGAAGACCATAGGA i mm10.chr1 I 203 C 0 e canFam3.chr7 36320965 0 + 80974532 C e calJac3.chr19 14156063 874 - 49578535 I e panTro4.chr1 224901162 1210 + 228333871 M a score=53073.000000 s hg38.chr1_KI270759v1_alt 149854 22 + 425601 CATTAGTTTCTACCTACAGTTT s ponAbe2.chr1 226256977 22 - 229942017 CATTAGTTTCTACCTACAGTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140149412 22 - 143122389 CATTAGTTTCTACCTACAGTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16863125 22 - 229590362 CATTAGTTTCTACCTACAGTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223625477 22 - 227556264 CATTAGTTTCTACCTACAGTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16677164 22 - 220367699 CATTAGTTTCTACCTACAGTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82475572 22 + 85787240 CATTAGTTTCTACCTACAGTTT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178745289 18 + 195471971 CATCAG----CATTTACAGTTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36320965 22 + 80974532 TGTTACTTTCTATTTACACTTG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14156063 874 - 49578535 I e panTro4.chr1 224901162 1210 + 228333871 M a score=685989.000000 s hg38.chr1_KI270759v1_alt 149876 324 + 425601 -------CAGTATAAGCAAATGCTTAAGGTGACG--ATGCCAAGAGAAATAAAAGCTCTCTTTAGCTGCCTTCTTCTCCC-GTCATTGAGAAGAGCCTTATTAGATACAGA-----------TGGATGAATATT-----CAAGA--------AGCCAGAGAGT----------------GTGAAGAAGTGAGAGAGGCTGACCCTTGCCCTGAGCAATGCTAGACTC------------TTGGTTGGGAAGTTCTGTTCTGCCAGCACCCCTGAGG-C-CAGAGAGGCCTTGCTGGTCTTCTCTGCGTCTCCCTCAGGACATGGCT----GCCCAGTGGAGGACATTCAGCCAC--------TCAGCACTGGG--TATGATCTTCCCTTAACCTATTCCCGT s ponAbe2.chr1 226256999 304 - 229942017 -------CAGTATAAGCAAATGCTTAAGGTGACG--ATGCCGAGAGAAATAAAATCTCTCTTTAGCTGCCTTCTTCTCGC-CTCATTGAGAAGAGCCTTATTAGATACAGA-----------TGGATGAATATT-----CAAGA--------AGCCTGAGAGT----------------GTGAAGAAG-GAGAGAGGCTGACCCTTGCCCTGAGCAATGCTAGACTC------------TTGGTTGGGAAGTTCTGTTCTGCCAGCACCCCTGAGG-C-CAGAGAGGCCTTGCTGGTCTTCTCTGCATCTCCCTCAGGACATGGCT-----------------------GCCAC--------TCAGCACTGGG--TATGACCTTCCCTTAACCTATTCCCGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140149434 324 - 143122389 -------CAGTATAAGCAAATGCTTAAGGTGACA--ATGCCAAGAGAAATAAAATCTCTCTTTAGCTGCCTTCTTCTCCC-GTCATTGAGAGGAGCCTTATTAGATACAGA-----------TGGATGAATATT-----CAAGA--------AGCCTGAGAGT----------------GTGAAGAAGTGAGAGAGGCTGACCCTTGCCCTGAGCAATGCTAGACTC------------TTGGCTGGGAAGTTGTGTTCTGCCAGCACCCCTGAGG-C-CGGAGAGGGCTTGCTGGTCTTCTCTGCATCTCCCTCAGGACAAGGCT----GCCCAGTGGAGGACATTCAGGCAC--------TCAGCACTGGG--TGTGACCCTCCCTTAACCTATTACCAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16863147 327 - 229590362 -------CAATATAGGCAAATGCATAAGGTGACGACACGCCAAGAAAAAGAAAATCTCTCTTTAGCTGGCTGCTTCTCCCTGTCATTGAGATGATCCTGATTGGATACAGA-----------CGGATGAATAGT-----CAAGA--------AGCCTGAGAGC----------------GTGAAGGAGACAGACAGCCTGACCCTTGCCCCGAGCGATGCTAGACTC------------TTGGTTGGGAAGTTCTGTTCTGCCAGCACCCCTGCGG-C-CAGAGAGGCCTGGCTGGTCTTCTCTGCGTCTCCCTCAGGACGTGGCT----GCCCAGCCGAGGACATTCAGCCAC--------TCCGCTCTTGG--TATGACCTTCCCTTAACCTATTCCCAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223625499 327 - 227556264 -------CAATATAGGCAAATGCATAAGGTGACGACACGCCAAGAAAAAGAAAATCTCTCTTTAGCTGGCTGCTTCTCCCTGTCATTGAGATGATCCTGATTGGATACAGA-----------CGGATGAATAGT-----CAAGA--------AGCCTGAGAGC----------------GTGAAGGAGACAGACAGCCTGACCCTTGCCCCGAGCGATGCTAGACTC------------TTGGTTGGGAAGTTCTGTTCTGCCAGCACCCCTGCGG-C-CAGAGAGGCCTGGCTGGTCTTCTCTGCATCTCCCTCAGGACGTGGCT----GCCCAGTCGAGGACATTCAGCCAC--------TCCGCTCTTGG--TATGACCTTCCCTTAACCTATTCCCAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16677186 335 - 220367699 -------CAATATAGGCATATGCATAAGGTGACGACAcgccaagaagaagaaaatctctCTTTAGCTGGCTGCTTCTCCCTGTCATTGAGATGATCCTGATTGGATACAGA-----------CGGATGAATAGT-----CAAGA--------AGCCTGAGAGC----------------GTGAAGGAGAGAGACAGCCTGACCCTTGCCCCGAGCGATGCTAGACTC------------TTGGTTGGGAAGTTCTGTTCTGCCAGCACCCCTGCGG-C-CAGAGAGGCCTGGCTGGTCTTCTCTGCGTCTCCCTCAGGACGTGGCT----GCCCAGCCGAGGACATTCAGCCACATTCAGCTACCGCTCTCGG--TATGACCTTCCCTTAACCTATTCCCAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82475594 327 + 85787240 -------CAATATAAGCAAATGCATAAGGTGACGACACGCCAAGAAAAAGAAAATCTCTCTTTAGCTGGCTGTTTCTCCCTGTCATTGAGATGAGCCTTATTGGATACAGA-----------CCGACGAATAGT-----CAAGA--------AGCCTGAGAGC----------------GTGAAGGAGAGAGACAGCCTGACCCTTGCCCCGAGCGATGCTAGACTC------------TTGGTTGGGAAGTTCTGTTCTGCCAGCACCCCTGCGG-C-CAGAGAGGCCTGGCTGGTCTTCTCTGCGTCTCCCTCAGGACGTGGCT----GCCCAGCCAAGGACATTCAACCAC--------TCAGCTCTCAG--TATGACCTTCCCTTAACCTATTCCCAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14156937 311 - 49578535 -------cAGTATAAGCAAATTTTTAGGGCGACA--ATGCCAAAAGCAATGCAGTCTCAGTTTAGCTACCTTTTCCTCCCAGTCATTGAGATGAGC----------ACAGA-----------TGGATGAATATT-----CAAGA--------CCACTGAGAGT---------------------GAAGTGAGAGAATGTGACCCTTGCCCAGAGCAGTGCTAGACTCAGTGTCCGGATTTGGGTTGGGAAGTTCTGTTCAGCCAGCACCTCTGGGGAC-CAGAGAGGCCTTGCTGGTCTTCCCTGGGTCTCTCTCGGGACGTGGCT----GTCTGGAGAAAGACGTTCAGCCAC--------TCAGTAGTGGGTATATGACCTTCCAT-------------- i calJac3.chr19 I 874 C 0 s mm10.chr1 178745307 320 + 195471971 -------CAGCACGAGCAAATGCTTGAAGTGTGG---TACCCAGAGGAG----------------------ACTTTTCTCTATACGGGAGAGAAGCCTGGCTGGATACAGAGGGCGGTGGAGAGGACAGATATTGTTTACAAAACAGTGTTCAGCATATGAGTTAAATAGACCCCAGGAGTGAAGCAGAGAG------TGTATATTGTCCAGAATACT---------------------GTAGTTAGGCAGACCTATCCCAACAGGACC-CAACAG-C-CTGC-AAGCCTTGGTATGTTTCTCTGGGCTTCCTTTAGCTTACAATG----GCCCACTTGGGGTGA--CAGCCAC--------CCAGTGCT-GG--TGTGATCTTCACTT--CCCATCTCTGT i mm10.chr1 C 0 I 78 s canFam3.chr7 36320987 309 + 80974532 CAACGTATGTTATAAACAGATGTGTAAGGTG-----ATGCCAAGGTAAATAGAGCCCTTCTATAGCTGCCTTTCTCTCCTGCTCATGATGATGAGCCCAAATGGATACAGA-----------AAAATGAATAGT-----CCAGA--------AA--GGAGAGT----------------GTGAA------------------CATTGCCCAAAGTGCTTGTTCATGC--------------AGCCCAGCAGTTCTGTTCTGCCGGCACCACTGGGG-CTCAGCAAAGGCCTGCTGCTCTTCTCTGGATCTTTCTCTGAAAGTGCTTCCAGGCCAGGAAGGGGAGA--GAGCCAC--------TCGGTAGT-GG--TACAGTCTTCACTTAACATCTCCCCAT i canFam3.chr7 C 0 C 0 e panTro4.chr1 224901162 1210 + 228333871 M a score=508674.000000 s hg38.chr1_KI270759v1_alt 150200 197 + 425601 CTATCAAAATGAA-GAGCCACTTCTAGATCTAAATTTCTGTAATTATCTGATAATTTATGTTTTA-------TTCTAATTACAAATCTGgcccattaaaaaaaattgagactgtatcagggtataaagaaaaaagacacccatgattccaggagtcagggataaccattagtggctttttagtgtgttaccttctcatctttttt s ponAbe2.chr1 226257303 196 - 229942017 CTATCAAAATGAA-GAGCCCCTTCTAGATCTAAATTTCTGTAATTATCTGATAATTTATGTTTTA-------TTCTAATTACAAATCTGgcccatt-aaaaaaattgagactatatcagggtgtaaagaaaaaagacacccatgattccaggagtcagggataaccattagtgcctttttagtgtgtttccttctcatctttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140149758 196 - 143122389 CTATCAGAATGAA-GAGCCCCTTCTAGATCTAAATTTCTGTAATTATCTGATAATTTATGTTTTA-------TTCTAATTATAAATCTGgcctatt-aaaaaaattgagactatatcagggtataaagaaaaaagacacccatgattccaggagtcagggataaccattagctgctttttagtgtgtttccttctcatctttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16863474 196 - 229590362 CTATCAAAATCAA-GGGCCCCTTCTAGATCGAAATTTCCGTAATTATCTGATAATTCATGtttta-------ttctaattacaaatctggcccatt-aaaaaaatttggactatatcagggtataaagaaaaaagacacccatgattccaggagtcagggataaccattagcggctttttagtgtgtttccttctaatctttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223625826 196 - 227556264 CTATCAAAATCAA-GGGCCCCTTCTAGATCGAAATTTCCGTAATTATCTGATAATTCATGtttta-------ttctaattacaaatctggcccatt-aaaaaaatttggactatatcagggtataaagaaaaaagacacccatgattccaggagtcagggataaccattagcggctttttagtgtgtttccttctaatctttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16677521 196 - 220367699 CTATCAAAATCAA-GGGCCCCTTCTAGATCTGAATTTCTGTAATTATCTGATAATTCATGTTTTA-------TTCTAATTACAAATCTGGCCCATT-aaaaaaaTTTGGACTATATCAGGGTATAAAGAAAAAAGCCACCCATGATTGCAGGAGTCAGGGATAACCATTAGCGGCTTTTTAGTGTGTTTGCTTCTAATCTTTTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82475921 196 + 85787240 CTATCAAAATCAA-GGGCCCCTTCTAGATCTAAATTTCTGTAATTCTCTGATAATTCATGtttta-------ttctaattacaaatccggcccatt-aaaaaaattcggactatcttagggtatgaagaaaaaagacacccatgattccaggagtcagggataaccattagcggctttttagtgtgtttgcttctaatctttttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14157248 195 - 49578535 -TATAAAAATGAA-GAGTCCCTTCTAGATCTAAATGTCTGCAGTTCTCTGATAACTTATGTTTTA-------TTCTGATTACAAATCCAGCTCATT-AACAGCACTGACACTCTATCAGGGTATAAAGGGAAAAGACACCCAGGACTCCAGGAGTCAGGGATCTCCACGGGTGGCTTCTTAGTGCGTTTCCTTCTCATCTTTTTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36321296 196 + 80974532 CTATAAAAATGAATGGGTCCTCCCTGAATCTCAATTTTTGTAACGATCTGAAAATTTGTATCTTATTCTGAtttctgattataaaacagacccatt-gaaaaa--------tataggagggtataaggaaagaagatatttatgatctcaggggtcagagataaccactaatggctttttggtatgtttctttctgatcttttct i canFam3.chr7 C 0 C 0 e mm10.chr1 178745627 78 + 195471971 I e panTro4.chr1 224901162 1210 + 228333871 M a score=1231455.000000 s hg38.chr1_KI270759v1_alt 150397 441 + 425601 catacatCTGTAGTTATTTTGCAGAATTAGATTCCTGTGTGTATGCAA----------CATtttcttcactaac--------cttatctcttgaacatttacctgtgtcatttagtataaactgaaaaataaatatccgtgaagactctagat----cattacattatgtggattatattttatttaatgaataccttatcgttgtatatttaagtgttttgctgtgataaatgatgctgccatgaatatgtttgcacacaaatctttgtacacatctgcgtttatttccttagtatataattctagca-------------gtcaa-------ggtgttttgatatttttaaggcacttaatacacaatgccaaattCTACACCAGCACtatatgaatgcccagtttctggaacccactccaatactgaatgcgatctttgcgtatttgatagtttaaaattatacctcactttaaaagttg s ponAbe2.chr1 226257499 441 - 229942017 catacatctgttgttattttgcagaattagattcctgtgtgtatgcag----------cattttcttcactaac--------attatctcttgaacatttgcctgtgtcatttagtataaactgaaaaataaatacccgtgaagactctagat----cattacattatgtggattgtattttatttaatgaataccttattgttgtatatttaagtgttttgctgtgataaatgatgctgccatgaatatgtttgcacacaaatctttgtacacatctccatttatttccttagtatataattctagca-------------gtcaa-------ggtgttttgatatttttaaggcacttaatacacaatgccaaattCTACACCAGCACtatgtgaatgcccagtgtctggaacccacaccaatactgtatgtgatctttgcatatttgatagtttaaaattatacctcactttaaaagttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140149954 435 - 143122389 catacatCTGTAGTTATTTTGCAGAATTAGATTCCTGTGTGTATGCAA----------CATTTTCTTcac--------------tatctcttgaacatttgcctgtgtcgtttagtataaacggaaaaataaatatccgtgaagactctagat----cattacattatgtggattatattttatttaatgaataccttattgttgtatatttaagtgttttgctgtgataaatgatgctgccatgaatatgtttgcacacaaatctttgtacacatctccgcttatttccttagtatataattctagca-------------gtcaa-------ggtgtttggatatttttaaggcacttaatacacaatgccaaattctacaccagcactatgtgaatgcccagtttctggatcccgcgccaatactgaatgtgatctttgcgtatttgatagtttaaaattatacctcactttagaagttg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16863670 434 - 229590362 catacatctgtagttattttacagaattagattcctatgtgtatgcaa----------tattttctccactaa---------attatctcttgaacatttgcctgtgtcatttagtataaactgaaaaataaatatctgtgaagactctagat----cattacattatgtgaattatattttatttaatgaataccttattgttgtatatttaagtgttttgctgtgataaatgatgctgcgatgaatatgtttacacacaaatctttgtacacacccccatttatttccttagtatctaattctagca-------------gtcaa-------ggtgttttgatatttttaaggcatttaataca------caaattctacaccagcactatgtgaatgcccagtttctggaacccatgccagtactgaatgtgatctttgcagatttgagagtttaaaagtatacctcactttgaaagttt i rheMac3.chr1 C 0 I 309 s macFas5.chr1 223626022 434 - 227556264 catacatctgtagttattttacagaattagattcctatgtgtatgcaa----------tattttctccactaa---------attatctcttgaacatttgcctgtgtcatttagtataaactgaaaaataaatatctgtgaagactctagat----cattacattatgtgaattatattttatttaatgaataccttattgttgtatatttaagtgttttgctgtgataaatgatgctgcgatgaatatgtttacacacaaatctttgtacacacccccatttatttccttagtatctaattctagca-------------gtcaa-------ggtgttttgatatttttaaggcatttaataca------caaattctacaccagcactatgtgaatgcccagtttctggaacccatgccagtactgaatgtgatctttgcagatttgagagtttaaaagtatacctcactttaaaagttt i macFas5.chr1 C 0 I 323 s papAnu2.chr1 16677717 434 - 220367699 CATACATCTGTAGTTATTTCACAGAATTAGATTCCTATGTGTATGCAA----------TATTTTCTCCACTAA---------ATTATCTCTTGAACATTTGCCTGTGTCATTTAgtataaactgaaaaataaatatccgTGAAGACTCTAGAC----CATTAcattatgtgaattatattttatttaatgaataccTTATTGTTGTATATTTAAGTGTTTTGCTGTGATAAATGATGCTGCGATGAATATGTTTGCACACAAATCTTTGTACACACCCCCATTTATTTCCTTAGTATCTAATTCTAGCA-------------GTCAA-------ggtgttttgatatttttaaggCATTTAATACA------CAAATTCTACACCAGCACTATGTGAATGCCCAGTTTCTGGAACCCACGCCAATACTGAATGTGATCTTTGCAGATTTGAGAGTTTAAAAGTATACCtcactttaaaagttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82476117 435 + 85787240 catacatctgtagttattttacagaattagattcctatgtatatgcaa----------tattttctccactaac--------attatctcttgaacatttgcctgtgtcatttagtataaactgaaaaataaatatccgtgaagactctagat----cattacattatgtgaattatattttatttaatgaataccttattgttgtatgtttaagtgttttgctgtgataaatgatgctgcgatgaatatgtttgcacacaaatctttgtacacacccccatttatttccttagtatctaattctagca-------------gtcaa-------ggtgttttgatatttttaaggcatttaataca------caaattctacaccagcactatatgaatgcccagtttctggaacccacgccaatactgaatgtgatctttgcagatctgagagtttaaaagtatacctcactttaaaagttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14157443 439 - 49578535 CACG-ATCTGTGGTTATTTTACAGAATTAGATTCCTGTGTGTGTGCAG----------CGTTGTCTTCACCGAC--------ATTGTCTCCTGGACGTTTGCCTGCGTCATTTACTATAACCTGAAAAATACATATCTGCGAAGActgcagat----cactacattatgtgggttata-tttatctaatgaataccttactgctgggcatttaagtgtttttctgtgataaatcatgctgccatgaatagctttgcacataaatctttgcacacatctccgtttatttccttcgtatataattctagca-------------gtcca-------ggtgttttgatatttttaaggcactgcatacacaatgccagattctacaccagcaccatgtgaatgcacagtttctggagcccatgccgataaggaatgtgatctttgcatatctgatagtttaaaattatacctcactttaaaagatt i calJac3.chr19 C 0 C 0 s mm10.chr1 178745705 432 + 195471971 CATACATC--------GTTTACAGCATCCAGTT----TACCCGAGCAG----------AATATTCTCAGCTGATGTTTTTTGTTTTTTTCTTGAATGTTTGCCCATGTCATTTTATATGAACGGAAAAACAAACCCAAACG-AGCCTCTGGTTATCCCATTACATCATA------ACATCTTATTTAATGACTACC---CTGTTGTATATTTAAGTGACTCGCTATGATAAA-GCTCTTTCTCTGAGTATCCTTGCATGAGAAGTCCCATGCATGTCCCTGTTTGCTGTCTTCACCTGTAAGTCTAGCA-------------GGAAAATCTTTGGGGCTGCTGCTATTGTTAAGCTGTTTGGGGCAGAGGGCCACACTCTGCCCGGGTGC----TGAGTACTCAGTCCCCTGGATTTGTACCAAGACTGAGTGTTACCTTTGC-CCTTTGATAGCTTAAAATTGTATAACGTTTGAAAATTCC i mm10.chr1 I 78 I 6 s canFam3.chr7 36321492 459 + 80974532 ca-acgtgtatagttatttaacagaattggattcttgtgtctatgcagtgttgtgttccattgtcttcaatagc--------attatctctcaaacatttgtccatgtcatttaacataacttgaaaaataaatat--gtgaagactacagat----cattgcattatggggatagtattttatttaacgaataccgtattgttgtatatttaggtgttttgctatgacaaatgatgctgcagtgaacatctttgtacataaattgtagtacatattttgggttatttcctcagtatgtaatcttagcaggagaatcactgggtcga-------agtgtattgatatt-ttaaggcacttgctacataacg-cacattacctactagCCATATGTGAATGCCCAATGTCCTGAACTTGTGTCAATACTGAATATTACCTTTGCCAATTTGACAGTTTTAAATGATACTTGATCTTAAATTTTG i canFam3.chr7 C 0 C 0 e panTro4.chr1 224901162 1210 + 228333871 M a score=478538.000000 s hg38.chr1_KI270759v1_alt 150838 173 + 425601 tttccttttcttgctcatttggttgaatgttttcatgtgtctatcagccatttaaattatcctgctaaatttttttctgtggctttt-agtcttccttccattaggatattt--gggtttttcttagtgattttt---aagaactctAGGATTCTATTATTTTAAAATATAAATTGAGT s ponAbe2.chr1 226257940 172 - 229942017 tttccttttcttgctcatttggttgaatgttttcgtgtgtctatcagccatttaaattatcctgctaaa-ttttttctgtggctttt-agtcttccttccattcggatattt--gggtttttcttagtgattttt---aagaactctAGGATTCtattattttaaaatataaattGAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140150389 173 - 143122389 tttccttttcttgctcatttggttgagtgttttcatgtgtctatcagccatttaaattatcctgctgaa-ttttttctgtggcttttaagtcttccttccattaggatattt--gggtttttcttagtgattttt---aagaactctAGGATTCTATTATTTTAAAATATAAATTGAGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16864413 172 - 229590362 tttccttttcttgctcatttggttgaatgttttcatgtgtctatcagccatttaaattatcctgctaat-ttttttctgtgcctttt-attcttccttccattaggatattt--gggtttttcttagtggttttt---aagaactctAGGATGCtattattttaaaatataaattgagt i rheMac3.chr1 I 309 C 0 s macFas5.chr1 223626779 172 - 227556264 tttccttttcttgctcatttggttgaatgttttcatgtgtctatcagccatttaaattatcctgctaat-ttttttctgtgcctttt-attcttccttccattaggatattt--gggtttttcttagtggttttt---aagaactctAGGATGCTATTATTTTAAAATATAAATTGAGT i macFas5.chr1 I 323 C 0 s papAnu2.chr1 16678151 172 - 220367699 tttccttttcttgctcaTTTGGATGaatgttttcatgtgtctatcAGCCATTTAAATTATCCTGCTAAG-TTTTTTCTGTGcctttt-attcttccttccaTTAGGATATTT--GGGTTTTTCTTAGTGGTTTTT---AAGAACTCTAGgatgctattattttaaaatataaattgagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82476552 172 + 85787240 tttccttttcttgctcatttggttgaatgttttcatgtgtctatcagccatttaaattatcctgctaaa-ttttttctgtgcctttt-attcttacttccattaggatattt--gggtttttcttagtggttttt---aagaactctAGGATGCTATTATTTTAAAATATAAATTGAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14157882 168 - 49578535 tttccttgtattgctcatttggttgaatgttttcatgtgtctctcagccatttaaattatgctgcagaa-ttttttctgtgtttttt-attctttcttccattaggatatt------tttttcttagtgattttt---aagaactctAGAATCCTATTATTTTAAAATACAAACTGAAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178746143 129 + 195471971 TTTCC------------TTTGGTTAGTGGTTT-----------------------------CTGCTAAA-GTTTTTTGTTTCTTTTC-TTTCATACTCTTCTTGGAGTATTTGGGGGGTTTTCCTAGT--TTCTA---AAGAACTCCATTATGTTAT--TTTTAAAGTATGAACTGAGT i mm10.chr1 I 6 I 3 s canFam3.chr7 36321951 163 + 80974532 -TTCATTTTATTGCTCTTTGGGTTGACTGTTTTT---CATTTGTCAGTCATTTAAATTATTTTGCAAAA-TTTTTTC------TTTC-ATTCACCCTTCCATTAGAGCATTT--GGGTTTTCCTTGGTGATTTTTTTAAAGAACTCAA--ATTATATTGTTATAACATCTGAACTAAGT i canFam3.chr7 C 0 C 0 e panTro4.chr1 224901162 1210 + 228333871 M a score=6552.000000 s hg38.chr1_KI270759v1_alt 151011 2 + 425601 TA s ponAbe2.chr1 226258112 2 - 229942017 TA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140150562 2 - 143122389 TA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16864585 2 - 229590362 ta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223626951 2 - 227556264 TA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16678323 2 - 220367699 ta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82476724 2 + 85787240 TA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14158050 2 - 49578535 TA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36322114 2 + 80974532 TA i canFam3.chr7 C 0 C 0 e mm10.chr1 178746272 3 + 195471971 I e panTro4.chr1 224901162 1210 + 228333871 M a score=366893.000000 s hg38.chr1_KI270759v1_alt 151013 128 + 425601 CCAAAATAGTTTAAA-TTTTAACAAAACTGCTGTAGCTGGCCTCCTTTTATAA-GGTAACCTTGTTATTGTTTGCCAGCTGTTGTGCCTGG--CACAGAGCTATGCATACCCAAGGGGCTACATAAATGCTT s ponAbe2.chr1 226258114 128 - 229942017 CCAAAATAGTTTAAA-TTTTAACAAAACTGCTGTAGCTGGTCTCCTTTTATAA-GGTAACCTTGTTATTGTTTGCCAGCTGTTGTGCCTGG--CACAGAGCTATGCATACCCAAGGGGCTACATAAATGCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140150564 128 - 143122389 CCAAAATAGTTTAAA-TTTTAACAAAACTGCTGTAGCTGGTCTCCTCGTATAA-GGTAACCTTGTTATTGTTTGCCAGCTGTTGTGCCTGG--CACAGAGCTATGCATACCCAAGGGACTACATAAATGCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16864587 128 - 229590362 ctaaaatattttaaa-tGTTAACAAAGCTGCTGTGGCTGATCTCCTTTTATAA-GGTAACTCTGTTGTTGTTTGCCAGCTCTTGTGCCCGG--CACGGAGCTACGCATGCCCAAGGGGCTACGTAAATGCTT i rheMac3.chr1 C 0 I 69 s macFas5.chr1 223626953 128 - 227556264 CTAAAATATTTTAAA-TGTTAACAAAGCTGCTGTGGCTGATCTCCTTTTATAA-GGTAACTCTGTTGTTGTTTGCCAGCTCTTGTGCCCGG--CACGGAGCTACGCATGCCCAAGGGGCTACGTAAATGCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16678325 128 - 220367699 ctaaaatattttaaa-tgttaacaaaGCTGCTGTGGCTTATCTCCTTTTATAA-GGTAACTCTGTTGTTGTTTGCCAGCTCTTGTGCCCGG--CACGGAGCTACGCATGCCCAAGGGGCTACGTAAATGCTT i papAnu2.chr1 C 0 I 2 s chlSab2.chr25 82476726 127 + 85787240 CTAAAATATTTTAAA-TTTTAGCAAAGCTGCTGTAGCTGATCTCCTTTTATAA-GGTAAC-CTGTTGTTGTTTGCGAGCTCTTGTGCCCGG--CACAGAGCTACGCATACCCAAGGGGCTACATAAATGCTT i chlSab2.chr25 C 0 I 14 s calJac3.chr19 14158052 129 - 49578535 CCCAAATATTTTAAATTTTTGACGAAGCTGCTGTACCTGCTCTCCTTTCATAA-TGTGACTCTGTTAGTGTTTCCCGGCTCTTGCGCCTGG--CATAGAGCTATGCATACCCAAGGGGCTACATGACTGCTt i calJac3.chr19 C 0 C 0 s mm10.chr1 178746275 121 + 195471971 CCAAAATATTTTAAT-TTTTAATGAAACTGCAGTGGCCAAGCTCCTTTTATAA-TATAACCCCATTATCGTTTCCCAAC-------CCTGG--CATGGGGCTGTGCACACTCAGGGGACTACATAAATGCTT i mm10.chr1 I 3 C 0 s canFam3.chr7 36322116 129 + 80974532 TCAAAATATTCTAAA-TTTTAACCATGCTACAACAATCAGTCTCCTTTTATGATTGTAACCCGCTTATGATTTCCCACCCCTGATACATGGAACAGAGAGCTATGCATA--CAAGGAGCTACACAAATGTTT i canFam3.chr7 C 0 C 0 e panTro4.chr1 224901162 1210 + 228333871 M a score=2730.000000 s hg38.chr1_KI270759v1_alt 151141 2 + 425601 TT s ponAbe2.chr1 226258242 2 - 229942017 TT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140150692 2 - 143122389 TT i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16678455 2 - 220367699 TT i papAnu2.chr1 I 2 C 0 s mm10.chr1 178746396 2 + 195471971 TT i mm10.chr1 C 0 I 1 s canFam3.chr7 36322245 2 + 80974532 TT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14158181 0 - 49578535 C e rheMac3.chr1 16864715 69 - 229590362 I e chlSab2.chr25 82476853 14 + 85787240 I e macFas5.chr1 223627081 0 - 227556264 C e panTro4.chr1 224901162 1210 + 228333871 M a score=422.000000 s hg38.chr1_KI270759v1_alt 151143 1 + 425601 T s ponAbe2.chr1 226258244 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140150694 1 - 143122389 T i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16678457 1 - 220367699 C i papAnu2.chr1 C 0 C 0 s canFam3.chr7 36322247 1 + 80974532 T i canFam3.chr7 C 0 I 524 e mm10.chr1 178746398 1 + 195471971 I e calJac3.chr19 14158181 0 - 49578535 C e rheMac3.chr1 16864715 69 - 229590362 I e chlSab2.chr25 82476853 14 + 85787240 I e macFas5.chr1 223627081 0 - 227556264 C e panTro4.chr1 224901162 1210 + 228333871 M a score=-7726.000000 s hg38.chr1_KI270759v1_alt 151144 21 + 425601 CATTTTT----------------------------------TATTTTTAttttta s ponAbe2.chr1 226258245 21 - 229942017 CATTTTT----------------------------------TATTTTTAttttta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140150695 15 - 143122389 CAt----------------------------------------tttttattttta i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223627081 14 - 227556264 ---ATTT--------------------------------------TAAATTGTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16678458 55 - 220367699 CAGCTTTGTGCCCGGCACGGAGCTATGCATACCCAAGGGGCTAcgtaaatgctta i papAnu2.chr1 C 0 I 9 s calJac3.chr19 14158181 7 - 49578535 --------------------------------------------ttttatt---- i calJac3.chr19 C 0 C 0 e mm10.chr1 178746398 1 + 195471971 I e canFam3.chr7 36322248 524 + 80974532 I e rheMac3.chr1 16864715 69 - 229590362 I e chlSab2.chr25 82476853 14 + 85787240 I e panTro4.chr1 224901162 1210 + 228333871 M a score=9542.000000 s hg38.chr1_KI270759v1_alt 151165 8 + 425601 tttatttg s ponAbe2.chr1 226258266 8 - 229942017 tttattta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140150710 8 - 143122389 tttatttg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16864784 8 - 229590362 GTTAttta i rheMac3.chr1 I 69 C 0 s macFas5.chr1 223627095 4 - 227556264 ----ttta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16678522 8 - 220367699 gttattta i papAnu2.chr1 I 9 C 0 s calJac3.chr19 14158188 8 - 49578535 tttattta i calJac3.chr19 C 0 C 0 e mm10.chr1 178746398 1 + 195471971 I e canFam3.chr7 36322248 524 + 80974532 I e chlSab2.chr25 82476853 14 + 85787240 I e panTro4.chr1 224901162 1210 + 228333871 M a score=8648.000000 s hg38.chr1_KI270759v1_alt 151173 5 + 425601 tttac s ponAbe2.chr1 226258274 5 - 229942017 tttcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140150718 5 - 143122389 tttac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16864792 5 - 229590362 tttat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223627099 5 - 227556264 tttat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16678530 5 - 220367699 tttat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82476867 5 + 85787240 tttat i chlSab2.chr25 I 14 C 0 s calJac3.chr19 14158196 5 - 49578535 cttat i calJac3.chr19 C 0 C 0 e mm10.chr1 178746398 1 + 195471971 I e canFam3.chr7 36322248 524 + 80974532 I e panTro4.chr1 224901162 1210 + 228333871 M a score=890007.000000 s hg38.chr1_KI270759v1_alt 151178 301 + 425601 ttatttattgagacagaatctccctctgttgcccagtctggagtgcagtggcatgatcttgg-----------------ctcactgcaacctttgtctcctgggttcaagcgattctcctgcctcagcctcctgtgtagctgggaccacagctgcatgctaccatgcccagctaatttttgtatttttagtagagatggggtttcaccacgttggccaggctgggctcgaactcctgacgtcaggtgatctgcccgcctcggcctcccaaagtgctgggattacaggcatgagccactgcacccagccCATAAATGCT s panTro4.chr1 224902381 300 + 228333871 TTAtttattgagatagaatctccctctgttgcccagtctggagtgcagtggcatgatcttgg-----------------ctcactgcaaccttcgtctcctgggttcaagtgattctcctgcctcagcctcctgtgtagctgggaccacagctgcatgctaccatgcccagctaatttttatatttttagtagagatggggtttcaccacgttggccaggctggtctcgaactcctgacgtcaggtgatctgcccgcctcggcctcccaaagtgctgggattacaggcatgagccact-cacccagccCATAAATGCT i panTro4.chr1 M 1210 C 0 s ponAbe2.chr1 226258279 301 - 229942017 ttatttattgagacagaatctccctctgttgcccagtctggagtgcagtggcatgatctcgg-----------------ctcactgcaaccttcgtctcctgggttcaagcaattctcctgcctcaacctcctgtgtagctgggaccacaggcacatgctaccacgcccagctaatttttatatttttagtagagacgaggtttcaccatgttggccaggctggtctcgaactcctgacgtcaggtgatctgcccccctcggcctcccaaagtgctgggattacaggcatgagccactgcacccagccCATAAATGCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140150723 301 - 143122389 ttatttactgagacagcatctccctctgttgcccagtctggagtgcagtggcatgatctcgg-----------------ctcactgcaacctttgtctcctgggttcgagcgattctcctgcctcagcctcctgtgtagctgggaccacaggcgcatgctaccatgcccagctaatttttatatttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcctgatgtcaggtgatctgcccgcctcggcctcccaaagtgctgggattacaggcatgagccactgcacccagccCATAAATGCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16864797 301 - 229590362 ttacttattgagaaggaatctccctctgttgcccagtctggagtgcagtggcatgatctcgg-----------------ctccctgcaacctttgtctcctgggttcaagcgattctcctgcgtcagcctcccgtgtagctcggaccacaggcgcatcctaccatgcccagcaaatttctcgatttttagtagagacggcgtttcaccatgttggccaggctggtctcgaactcccgatgtcaggtgatctgcctgccttggcctcccaaagtgctgggataacaggcgtgagcccctgcacccagccCATAAATGCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223627104 318 - 227556264 ttacttattgagacggaatctccctctgttgcccagtctggagtgcagtggcatgatctcggctcactgcaaccttcgtctccctgcaacctttgtctcctgggttcaagcgattctcctgcgtcagcctcccgtgtagctgggaccacaggcgcatgctaccatgcccagcaaatttttctatttttagtagagacggcgtttcaccatgttggccaggctggtctcgaactcctgatgtcaggtgatctgcctgccttggcctcccaaagtgctgggataacaggcgtgagcccctgcacccagccCATAAATGCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16678535 318 - 220367699 ttacttattgagacggattctccctctgttgcccagtctggagtgcagtggcatgatctcggctcactgcaaccctcgtctccctgcaacctttgtctcctgggttcaagtgattctcctgcctcagcctcccgtgtagctgggaccacaggcgcatgctaccatgcccagcaaatttttctatttttagtagagacggcgtttcaccatgttggccaggctggtctcgaactcctgatgtcaggtgatctgcctgccttggcctcccaaagtgctgggataacaggcgtgagcccctgcacccagcccataaaTGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82476872 318 + 85787240 ttacttattgagacggaatctccctctgttgcccagtctggagtgcagtggcatgatctcggctcactgcaaccttcgtctccctgcaaccttcgtctcctgggttcaagtgattcacctgcctcagcctcccatgtagctgggaccacaggtgcatgctaccatgcccagcaaatttttctatttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcctgatgtcaggtgatctgcctgccttggcctcccaaagtgctgggataacaggcgtgagcccctgcacccaaccCATAAATGCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14158201 300 - 49578535 ttattttttgagacagaatctccctctgttg-ctaggctggagtctagtggcatgatctcgg-----------------ctcactgccacctccatctcctgggttcaagcgattcttctgcctcagcctcctgtgtaactgggaccacaggtgcatgccaccatgcctggctaagttttgtatttttagtagagacagggtttcaccatgttggccaggatggtctcaaactcctgacctcaagtgatctgcctgccttgacctcccaaagtgctggcattacaggtgtgagccactggccccagcTAGTAaatttt i calJac3.chr19 C 0 I 134 e mm10.chr1 178746398 1 + 195471971 I e canFam3.chr7 36322248 524 + 80974532 I a score=12334.000000 s hg38.chr1_KI270759v1_alt 151479 5 + 425601 TTTTT s panTro4.chr1 224902681 5 + 228333871 TTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226258580 5 - 229942017 TTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140151024 5 - 143122389 TTTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16865098 5 - 229590362 TGTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223627422 5 - 227556264 TGTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16678853 5 - 220367699 TGTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82477190 5 + 85787240 TGTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14158635 5 - 49578535 TTTTT i calJac3.chr19 I 134 C 0 e mm10.chr1 178746398 1 + 195471971 I e canFam3.chr7 36322248 524 + 80974532 I a score=351242.000000 s hg38.chr1_KI270759v1_alt 151484 104 + 425601 AATGAGAGAATGACCTATTATCTAAACATA--ATTGATGTACAGTGTTGGTTAGCAGAGCTAGTAGGAGAATTTT----TAGTCCATTAGGAGTT---ATAAG-AAAAGCTTTT s panTro4.chr1 224902686 107 + 228333871 AATGAGAGAATGACCTATTATCTAAACATA--ATTGATGTACAGTGTTGGTTAGCAGAGCTAATAGGAGAATTTT----TAGTCCATTAGGAGTTATAATAAG-AAAAGCTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226258585 107 - 229942017 AATGAGAGAATGACCTATTATCTAAACATA--ATTGATGTACAGTGTTGGTTAGTAGAGCTAATAGGAGAATTTT----TAGTCCATTAGGAGTTATAATAAG-AAAAGCTTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140151029 104 - 143122389 AATGAGAGAATGACCTA-TATCTAAACATA--ATTGATGTACAGTGTTGGTTAGTAGAGATAATAGGAAAATTTT----TAGTCCATTAGGAGTT---ATAAGAAAAAGCTTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16865103 107 - 229590362 AATGAGAGAATGACCTATTGTCTAAACGTA--ATTGATGTGCAGTGTTGGTTAGTAGAGATAATAGGAGAATTTT----GAGTCCGTTGGGAGTTATAATAAG-AAAAGCTTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223627427 107 - 227556264 AATGAGAGAATGACCTATTGTCTAAACGTA--ATTGATGTGCAGTGTTGGTTAGTAGAGATAATAGGAGAATTTT----GAGTCCGTTGGGAGTTATAATAAG-AAAAGTTTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16678858 107 - 220367699 AATGAGAGAATGACCTATTGTCTAAACGTA--ATTGATGTGCAATGTTGGTTAGTAGAGATAATAGGAGAATTTT----GAGTCCGTTGGGAGTTATAATAAG-AAAAGCTTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82477195 107 + 85787240 AATGAGAGAATGACCTATTGTCTAAACGTA--ATTGATGTGCAGTGTTGGTTGGTAGAGCTAATAGGAGAATTTT----GAGTCCATTGGGAGTTATAATAAG-AAAAGCTTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14158640 105 - 49578535 AATGAGAGAATGAC--ATTATCTAAACATA--ATTGATGTACAATGTTGGTTAGTAGAGCTAAAATGAGAATTTT----TAGTCCATTAGGAGTTATAATAAG-ATAAGCTTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178746399 112 + 195471971 AATGAGAGAACGATCCATTATCTAAATATGCCATTGATGTACAGGGTTGGTTCGTAAAG-TAACACGAGAATTTTTTTCTTGACCATTAGGAATTATAATAAG-GAAAACTTTT i mm10.chr1 I 1 C 0 e canFam3.chr7 36322248 524 + 80974532 I a score=166831.000000 s hg38.chr1_KI270759v1_alt 151588 48 + 425601 AGAATGAATTGTCCCAGAAAGGAGAGCTGGAAGAAAAAAA-CCCAAAAC s panTro4.chr1 224902793 49 + 228333871 AGAATGAATTGTCCCAGAAAGGGGAGCTGGAGGAAAAAAAGCCCAAAAC i panTro4.chr1 C 0 I 324 s ponAbe2.chr1 226258692 49 - 229942017 AGAATGAATTGTCCCAGAAAAGGAAGCTGGAAGAAAGAAAACCCAAAGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140151133 49 - 143122389 AGAATGAATTGTCCCAGAAAGGGGAGCTGGAAGAAAAAAAACCCAAAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16865210 47 - 229590362 AGAGTGAATTGTCCCAGAAAGGGGAGCTGGAAGAAAAAA--CCCAAAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223627534 47 - 227556264 AGAGTGAATTGTCCCAGAAAGGGGAGCTGGAAGAAAAAA--CCCAAAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16678965 47 - 220367699 AGAGTGAATTGTCCCAGAAAGGGGAGCTGgaagaaaaaa--cccaaaac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82477302 47 + 85787240 AGAGTGAATTGTCCCAGAAAGGAGAGCTGGAAGAAAAAA--CCCAAAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14158745 47 - 49578535 AGAATGCATTGTCCCAGAAAGGGAAGCTGGAAGAAAAAA--CTCAAAAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178746511 39 + 195471971 ATAATGAATTGCTCTAGGGAGGGAAGCTGCAAGGTAAAC---------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36322772 42 + 80974532 AGAATGAATTGTCCCAGAAAAAGAAGATGGAAGGAAAAC-----AAA-- i canFam3.chr7 I 524 C 0 a score=268376.000000 s hg38.chr1_KI270759v1_alt 151636 79 + 425601 AATATTCCACATCCACATATATGACCTAATGTTAGCGGAACATCACAGAGGACAAATATCGCAAATCAGAACAAAAGGA s panTro4.chr1 224903166 79 + 228333871 AATACTCCACATCCACATATATGACCTAATGTTAGCGGAACATCACAGAGGACAAACATCGCAAATCAGAACAAAAGGA i panTro4.chr1 I 324 C 0 s ponAbe2.chr1 226258741 79 - 229942017 AATATTCCACATCCACATATATGACCTAATGTTAGTGGAACATCACAGAGGACAAATATTGCAAATCAGAACAAGAGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140151182 79 - 143122389 AATATTCCACATCCACATATATGACCTAATGTTAGCGGAACATCACAGAGGACAAATACCGCAAATCAGAACAAAAGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16865257 77 - 229590362 AATTTTCCACATCCAC--ATATGACCTTATGTTAGCAGAACATCACGGAGGACAAATATCGCAAATCAGAACAGAAGTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223627581 77 - 227556264 AATTTTCCACATCCAC--ATATGACCTTATGTTAGCAGAACATCACGGAGGACAAATATCGCAAATCAGAACAGAAGTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16679012 77 - 220367699 aatatTCCACATCCAC--ATATGACCTTATGTTGGCAGAACATCACGGAGGACAAATATTGCAAATCAGAACAGAAGTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82477349 77 + 85787240 AATATTCCACATCCAC--ATATGACCTTATGTTAGCAGAACATCACGGAGGACAAATATCGCAAATCAGAACAGAAGTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14158792 78 - 49578535 AATATTCCACATCCATGTACATGACCTTATGTTAGCAGAACATCACGGAGGACAGATATCACAAATCA-AACAAAAGTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178746550 72 + 195471971 AGCGTGTCATATC------TGTGGCCTCAGACT-GCAGCTCATCACAGAGGACAGATGTTCTCAACCAAAGCAAAAGTA i mm10.chr1 C 0 I 138 s canFam3.chr7 36322814 73 + 80974532 ------CCATATTCACATACATGACCTTGTGCTAGCTAAATATCAGAGAGGACAAGTATTACAAATCAAGATGAAAGCA i canFam3.chr7 C 0 C 0 a score=657466.000000 s hg38.chr1_KI270759v1_alt 151715 215 + 425601 CAGCTCAGAGGTATTTTTCAAATTGAACAAAATTGTATGCATGCAAAATATAAATAGAATGATATTAGAAAGATt-----ttatcaaatcttaatgtttcggcac--ttttttcctg----ctgtttttaaagaaataaaacatgacagaacagttgacacctctgca---tttctccttttatctcat-ccccctttcatctataacacaggtggctttgattttgaat s panTro4.chr1 224903245 215 + 228333871 CAGCTCAGAGGTATTTTTCAAATTGAACGAAATTGTATGCATGCAAAATATAAATAGAATGATATTAGAAAGATt-----ttatcaaatcttaatgtttcggcac--ctttttcctg----ctgtttttaaagaaataaaacatgacagaacagttgacacctctgca---tttctccttttatctcat-ccccctttcatctataacagaggtgactttgattttgaaT i panTro4.chr1 C 0 I 12 s ponAbe2.chr1 226258820 214 - 229942017 CAGCTCAGAGGTG-TTTTCAAATTGAATGAAATTGTATGCATGCAAAATATAAATAGAATGATATTAGAAAGATT-----TTATCAAATCTTAATGTTTCAGCAC--TTTTTTCCTG----CTGTTTTTAAAGAAGTAAAACATGACAGAACAGTTGACACCTCTGCA---TTTCTTCTTTTATCTCAT-CCCCCTTTCATCTATAACGGAGGTAGCTGTGATTTTGAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140151261 216 - 143122389 CAGCTCAGAGGTTTTTTCCAAATTGAACGAAATTGTATGCATGCAAAATATAAATAGAATGATATTAGAAAGATt-----ttatcaaatcttaatgtttcggcac--ttttttcctg----ctgtttttaaagaagtaaaacctgacagaacagttgacacctctgca---tttcttcttttagctcatcccccctttcatctctagcagaggtggctatgattttgaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16865334 214 - 229590362 CAGCTCAGAGGCTTTTTTCAAATTGAATGATATTTCATGCATGCAAAACATAAATAGAATGATACTAGAAAGATt-----ttatcaaatcttcatgtttcggcac--tttttt-ctg----ttgtttttaaagaagtaaaacatgacagaactgttgacacctctgca--ttttcttcttttatctcat--cccctttcatctgtaacagaggtggctatcattttgaat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223627658 214 - 227556264 CAGCTCAGAGGCTtttttcaaattgaatgatatttcatgcatgcaaaacataaatagaatgatactagaaagatt-----ttatcaaatcttcatgtttcggcac--tttttt-ctg----ttgtttttaaagaagtaaaacatgacagaactgttgacacctctgca--ttttcttcttttatctcat--cccctttcatctgtaacagaggtggctatcattttgaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16679089 213 - 220367699 CAGCTCAGAGGCTTTTTTCAAATTGAATGATATTTCATGCATGCAAAACATAAATAGAATGATACTAGAAAGATT-----TTATCAAATCTTCATGTTTCGGcac--tttttt-ctg----ttgtttttaaagaagtaaaacatGACAGAACTGTTGACACCtctgca---tttcttcttttatctcaT--CCCCTTTCATCTGTAACAGAGGTGGCTGTCATTTTGAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82477426 213 + 85787240 CAGCTCAGAGGCTtttttcaaattgaatgatatttcatgcatgcaaaatataaatagaatgatattagaaagatt-----ttatcaaatcttcatgtttcggcac--tttttt-ctg----ttgtttttaaagaagtaaaacatgacagaactgttgacacctctgca---tttcttcttttatctcat--cccctttcatctgtaacagaggtggctatgattttgaat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14158870 202 - 49578535 CAGCTCGGAGGCT-TTTCCAAACTGAACGATGCTTTATGCATGCAACATGTAAATGGAATGATATTAGAAAGATT-----TCATCAAATCTTAATGTTTTGGCAC--TTTTTC-CCG----CTGTTTTTAAAGAAACAAAATATGACGGAGCAATTGACATCTC-GCA--TTTCCTTCTTTTACCTCAT------------CTATACTAGAGGTAGCTATTATTTTGAAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178746760 192 + 195471971 CAGCTCAGATGCT-TTTTCAAGTCAAGCAGTAGTTTATACATACAAACTGTGACTAGAAGA-----AGAAAGCTTAGAAGTCATAAGGTCCCCA---CTCATCAA--TCATTT-------------CCTAAGGAAATAAGACA--GCAGTATGGTTGAGGCCTCTGCAGACCTTGTTCATCTCTCTCCT-CTTCCCCTC--------CAGAAGTG---CTCGGTTTAAAC i mm10.chr1 I 138 C 0 s canFam3.chr7 36322887 206 + 80974532 CAGCTCAGAATTC-TTTTCAAATTAGACAGTATTTTAGGCATGCAAAATGAGAACAAAATA-----AGAAAGGTT-TTTTTTATCAAATCTTCATGTTTTGTCATCATGTTTTCCTGATTCTTTTTTTTAAAGAGCTGAAGCATCACAGAATAGCTGAGCCTcctgac-----------tccatcccac-ccacttcccctc-----cagaggtagctattatttcgaat i canFam3.chr7 C 0 C 0 a score=150290.000000 s hg38.chr1_KI270759v1_alt 151930 70 + 425601 atggtgctta-----tcatctgag-------------tgtgt----g-ctttcatgctttga-tgacataagtgtaca-----------------------------------------------aatggtatcatacttt s ponAbe2.chr1 226259034 70 - 229942017 ATGGTGCTTA-----TTATCTGAG-------------TGTGT----G-CTTTTATGCTTTGA-TGACATAAGCGtaca-----------------------------------------------aatggtatcatacttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140151477 72 - 143122389 atgctgctta-----ttatctgag-------------tgtgt----gccttttatgctttgattgacataagcatACA-----------------------------------------------AATGGAATCATACTTT i nomLeu3.chr5 C 0 M 100 s rheMac3.chr1 16865548 70 - 229590362 atggtgctta-----ttatctgag-------------tgtgt----g-cttttatgctttta-tgacataagcataca-----------------------------------------------aatggtatcatacttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223627872 70 - 227556264 atggtgctta-----ttatctgag-------------tgtgt----g-cttttatgctttta-tgacataagcataca-----------------------------------------------aatggtatcatacttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16679302 70 - 220367699 ATGGTGCTTA-----TTATCTGAG-------------TGCGT----G-CTTTTATGCTTTTA-TGACATAAGCATACA-----------------------------------------------AATGGTATCATACTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82477639 70 + 85787240 atggtgctta-----ttatctgag-------------tgcat----g-cttttatgctttta-tgacataagcataca-----------------------------------------------aatggtagcatacttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14159072 70 - 49578535 ACGGTGCTTG-----TTATCTGAG-------------TGTGT----G-CTTTTATACTTTTA-TGATGTAAGCATGCA-----------------------------------------------AATGGGCTCATGCTTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178746952 78 + 195471971 ACCCGGCATACATGTTTCTCTAAGCAACGTGAAACATTGTGTCACAG-ttttagagttttga--------------ca-----------------------------------------------aatgttaccatccat- i mm10.chr1 C 0 C 0 s canFam3.chr7 36323093 116 + 80974532 atgtagttt------ttatttgac-------------tgcct----g-tttttgtactttta-tgatatgggtgtgcatctgtaagcaatatgcagtattgttttccatttttaaaccttttatgagtggtaccatacagt i canFam3.chr7 C 0 I 2 e panTro4.chr1 224903460 12 + 228333871 I a score=194245.000000 s hg38.chr1_KI270759v1_alt 152000 96 + 425601 gtttcctattgcaacatttcttttctcattcaatattatatatttgagattgatccattttaatag--------tattacatcata-ggagatttcacaacttat s ponAbe2.chr1 226259104 96 - 229942017 gtttcctattgcaacatttcttttctcattcaatattatatatttgagattgatccattttAATAG--------TATTACATCATA-GGAGATTTCACAACTTAT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16865618 97 - 229590362 gtttcctattgcaatgtttcttttctcattcaataatatatattcaagattgatccattttaatag--------tattgcatcatggggagatttcacaacttat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223627942 97 - 227556264 gtttcctattgcaacgtttcttttctcattcaataatatatattcaagattgatccattttaatag--------tattgcatcatggggagatttcacaacttat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16679372 97 - 220367699 GTTTCCTATTGCaacgtttcttttctcattcaataatatatatttgagattGATCCATTTTAATAG--------TATTGCATCATGGGGAGATTTCACAACTTAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82477709 97 + 85787240 gtttcctattgcaacgtttcttttctcactcaatgatatatatttgagattgatgcattttaatag--------tattgcatcatagggagatttcacaacttat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14159142 81 - 49578535 CTTTCCCATTGCAACATTTCCTGTCTCATTCAATCGTATATA----------------TTTAatag--------tattccagcacatggaaatttcgcagcgcat i calJac3.chr19 C 0 C 0 s mm10.chr1 178747030 99 + 195471971 -gtttctgttgcaacattacttc-----ctcagcgttatgcttctgggattgaagcatcttaataaagtggggctgatctattctgtggaaataccacaacttat i mm10.chr1 C 0 C 0 s canFam3.chr7 36323211 94 + 80974532 gtttctgattgcaacacttccttcttcgttcaatattatgcttttggtattgatccattttaatag--------tattctatcgtgggaaaa---cacaacttct i canFam3.chr7 I 2 C 0 e nomLeu3.chr5 140151549 100 - 143122389 M e panTro4.chr1 224903460 12 + 228333871 I a score=147727.000000 s hg38.chr1_KI270759v1_alt 152096 60 + 425601 ttattcactctctcatgtatggtcattccagtattttgctcttgcaaatgttgctacaac s ponAbe2.chr1 226259200 60 - 229942017 TTATTCACTCTCTCACGTATGGTCATTCCAATATTTTGCTCTTGCAAATGTTGCTGCAAC i ponAbe2.chr1 C 0 M 891 s nomLeu3.chr5 140151651 60 - 143122389 ttattcactctgtcacatatggtcattccaatattttgctcttgcaaatgctgctgcaac i nomLeu3.chr5 M 100 C 0 s rheMac3.chr1 16865715 58 - 229590362 ttattcactc--tcacgtatggtcattccaatattttgctcttgcaaatgttgctgcagc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223628039 58 - 227556264 ttattcactc--tcacgtatggtcattccaatattttgctcttgcaaatgttgctgcagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16679469 58 - 220367699 TTATTCACTC--TCACGCATGGTCATTCCAATATTTTGCTCTTGCAAATGTTGCTGCAGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82477806 58 + 85787240 tgattcactc--tcacgtatggtcattccaatattttgctcttgcaaatgttgctgcagc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14159223 60 - 49578535 ttgctcaccgtgtcacatgccgtcattcccagcctttgctcttgcaaatgttgccgcagt i calJac3.chr19 C 0 C 0 s mm10.chr1 178747129 52 + 195471971 ttatcctccc--tc-ttcaccatcatcccaatattttgtgtttgtgcacactgtt----- i mm10.chr1 C 0 I 2 s canFam3.chr7 36323305 60 + 80974532 ttctctgctctcccattggcagtccttccaatattttgctctcaaaaacgttgctgcagt i canFam3.chr7 C 0 C 0 e panTro4.chr1 224903460 12 + 228333871 I a score=17148.000000 s hg38.chr1_KI270759v1_alt 152156 9 + 425601 gagcat-tgt s nomLeu3.chr5 140151711 9 - 143122389 gagcgt-tgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16865773 9 - 229590362 aagcgt-tgt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223628097 9 - 227556264 aagcgt-tgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16679527 9 - 220367699 AAGCGT-TGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82477864 9 + 85787240 aagcgt-tgt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14159283 9 - 49578535 gaacat-tgt i calJac3.chr19 C 0 C 0 s mm10.chr1 178747183 10 + 195471971 gaatgtgtgt i mm10.chr1 I 2 C 0 s canFam3.chr7 36323365 9 + 80974532 gaacat-cat i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226259260 891 - 229942017 M e panTro4.chr1 224903460 12 + 228333871 I a score=1492661.000000 s hg38.chr1_KI270759v1_alt 152165 585 + 425601 tgatcatgctccc---ttttgcacacagataagtttctctagggtggaaatggaattgattgctaagtcataggta--tggatctccttcttttctagaaagagccaaatcatttttcaaGTTTTTAAGGTATTATATAAATACCTGCATTTCCCCCAAGGACATTTTACGTAAATGATGCCAGT-Taatatttgt-gagtgcttcctatgggccaggaactgtcctaa-gggttttatatg-attccacacatttgatcctcaactattcatttgacaagtgaggaaactgagattcagagaacttgaggatcttggccaaggtcttatagcaa-gtgccggagcccactcaaacccctcggcagtgtcgttctcaagccctctctcttaaccccaggctgtgctCTAGGTGCTAGAAAGACACTACCCATGCCA-GTTTATAGGGATATAAAGGCAGCGGCTATTTAGGCTGTAAG-AAAACTCCAA-------------CAAACCGAAGCAGCCTTCCTAGAGCattgctgttgtacagat--aggaagaagaaccagatggttgctcaatgtgtccaaggtccgcccgtcagtgactgatccaagact s panTro4.chr1 224903472 585 + 228333871 TGATcatgctccc---ttttgcacacagataagtttctctagggtggaaatggaattgattgcaaagtcataggta--tggatatccttcttttctagaaagagccaaatcatttttcaaGTTTTTAAGGTATTATATAAATACCTGCATTTCCCCCAAGGACATTTTACGTAAATGATGCCAGT-Taatatttgt-gagtgcttcctatgggccaggaactgtcctaa-gggttttatatg-attccacacatttgatcctcaactattcatttgacaagtgaggaaactgagattcagagaacttgaggatcttggccaaggtcttatagcaa-gtgccagagcccactcaaacccctcggcagtgtcgttctcaagccctctctcttaaccccaggctgtgctCTAGGTGCTAGAAAGACACTACCCATGCCA-GTTTATAGGGATATAAAGGCAGCGGCTATTTAGGCTGTAAG-AAAGCTCCAA-------------CAAACCGAAGCAGCCTTCCTAGAGCATTGCTGTTGTACAGAT--AGGAAGAAGAACCAGATGGTTGCTCAATGTGTCCAAGGTCCGCCCGTCAGTGACTGATCCAAGACT i panTro4.chr1 I 12 C 0 s nomLeu3.chr5 140151720 587 - 143122389 tgatcacgctcccagatcacacacacagat--gtttctctagggtggaaatggaattgattgctaagtcataggta--tggatctccttcttttctagaaagagccaaatcacttttcaTGTTTTTAAGGCATTATATAAATACCTGCATTTCCCCCAAGGACATTTGACATAAATGATGCCAGT-TAATTTTTGt-gagtgcttcctatgggccaggaactgtcctaa-gggttttatatg-attccacacttttgatcctcaactattcatttgacaagtgaggaaac--agattcagagaacttgaggatcttggcaaaggtcttacagcaa-gtgctggagcccactcaaagccctcggcagtgtcattctcaagccctctctcttaaccccaggctgtgctCTAGGTGCTAGAAAGACTGTACCCATGCCA-GTTTATAGAGATATAAAGACAGCAGCTATTTAGGCTGTAAGAAAAGCTCCAA-------------CACACCGAAGCAGCCTTCCTAGAGCATTGCTGTTGTGCAAATACAGGAAGAAGAATCAGATGGTCGCTCAATGTGTCCAAGGCCCACCCATCAGTGACTGATCCAAGACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16865782 584 - 229590362 tgatcatgctccc---ttttgcgcacagataagtttctctacggtggaaatgaaattgattgctaagtcataggta--tggatctccttcttttctagaaacagccaaatcatttttcaTATTTTTAATGCATTGTGTAAATACCTGAGTTTCCCCCAAGGATATTTTACATAAATGATGCCAGT-Gaatatttgt-gagtgcttcctatgggccagg-actgtcctag-cggttttatgag-attccacacatgtgatcctcaactattcatttggcaagtgaggaaactgagattcagagaacttgaggatcttggccaaggtcttacagcga-gtgccggagcccactcaaagccctccgcggtgtcgttctcaagccctctctcttaaccccaggctgtgctCTAGGTGCTAGAAAGACACTACCCATGCCA-GTTTATAGGGATACAAAGACAGCAGCTATCGAGCCTGTAAG-AAAGCTCCAG-------------CAAACCGAAGCAGCCTTCCTAGAGTATTGCGGttctacagat--aggaagaagaaccagagagttgctcagtgtgtccaaggtctacccatcagtgacagatccaagact i rheMac3.chr1 C 0 I 301 s macFas5.chr1 223628106 584 - 227556264 tgatcatgctccc---ttttgcgcacagataagtttctctacggtggaaatgaaattgattgctaagtcataggta--tggatctccttcttttctagaaacagccaaatcatttttcaTATTTTTAATGCATTGTGTAAATACCTGAGTTTCCCCCAAGGATATTTTACATAAATGATGCCAGT-Gaatatttgt-gagtgcttcctatgggccagg-actgtcctaa-cggttttatgag-attccacacatgtgatcctcaactattcatttggcaagtgaggaaactgagattcagagaacttgaggatcttggccaaggtcttacagcga-gtgccggagcccactcaaagccctccgcggtgtcgttctcaagccctctctcttaaccccaggctgtgctCTAGGTGCTAGAAAGACACTACCCATGCCA-GTTTATAGGGATACAAAGACAGCAGCTATCGAGCCTGTAAG-AAAGCTCCAG-------------CAAACCGAAGCAGCCTTCCTAGAGtattgcggttctacagat--aggaagaagaaccagagagttgctcagtgtgtccaaggtctacccgtcagtgacagatccaagact i macFas5.chr1 C 0 I 299 s papAnu2.chr1 16679536 581 - 220367699 TGATCATGCTCCC---TTTTGTGCACAGATAAGTTTCTCTAGGGTGGAAATGGAATTGATTGCTAAGTCATAGGTA--TGGATCTC---CTTTTCTAGAAAGAGCcaaatcatttttcatatttttaaggcATTGTGTAAATACCTGAGTTTCCCCCaaggacattttatataaatgatgcCAGT-GAATATTTGT-GAGTGCTTCCTATGGGCCAGG-ACTGTCCTAA-CGGTTTTATATG-ATTCCACACATGTGATCCTCAACTATTCATTtgacaagtgaggaaactgagattcagagaactTGAGGATCTTGGCCAAGGTCTTACAGCAA-GTGCCGGAGCCCACTCAAAGCCCTCGGCGGTGTTGTTCTCAAGCCCTCTCTCTTAACCCCAGGCTGTGCTCTAGGTGCTAGAAAGACACTACCCATGCCA-GTTTATAGAGATACAAAGACAGCAGCTATCGAGCCTGTAAG-AAAGCTCCAG-------------CAAACCGAAGCAGCCTTCCTAGAGTATTGCGGTTCTACAGAT--AGGAAGAAGAACCAGAGAGTTGCTCAGTGTGTCCAAGGTCTACCCGTCAGTGACAGATCCAAGACT i papAnu2.chr1 C 0 I 326 s chlSab2.chr25 82477873 584 + 85787240 tgatcatgctccc---ttttgtgcacagataagtttctctagggtggaaatggagttgattgctaagtcataggta--tggatctccttcttttctagaaagagccaaatcatttttcaTATTTTTAAGGCATTGTGTAAATACCTGAGTTTCCCCCAAGGACATTTTACGTAAATGATGCCAGT-Gaatatttgt-gagtgcttcctgtgggccagg-actgtcctaa-tggttttatatg-attccacacatgtaatcctcaactattcatttgacaagtgaggaaactgagattcagagaacttgaggatcttggccaaggtcttacagcaa-gtgctggagcccactcaaacccgtcggcggtgtcgttctcaagccctctctcttaaccccaggctgtgctCTAGGTGCTAGAAAGATACTACCCGTGCCA-GTTTATAGGGATACAGAGACAGCAGCTATCGAGCCTGTAAG-AAAGCTCCAG-------------CAAACCGAAGCAGCCTTCCTAGAGtattgccgttctacagat--aggaagaagaaccagagagttgctcggtgtgtccgaggtctacccgtcagtgacagatccaagact i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14159292 539 - 49578535 tgatcacgctccc---ttctgtgcacagagaagtttctctgcggtggcagtggggttgatggctaagtcataggta--tgcgtctccttcttatctagaagaagccagatcatttttcGTG-TTTCAAGGTCTGATATGAATACCTGAGGTTCCCCCAAAGACATTTTACATAAATGATGCCAGT-Taatatttgc-gaatgcttcgtgcgggccgggagctgtcctag--ggttttgtatg-attcaacacatttgatcctcaactgttcatttttcaagtgaggaaactgagattcagagaacttgaggatcttggccgcggtcTT-------------------------------------------TTCTCAAGCCCTCTCTCTTAGCCCCAGGGTGTGCTGTAGGTATGAGAAACACACTACTCATGGT--GTTTATAGGGATAAGAAGATAGCAGTTGTTCAGCCTGCAAG-AAAGTTCCAG-------------AAAAACGAAGCAGCCTTGCTAGAGCACTGCTGttctgcagcg--agggagaaggaccag-tggtgacttaatttgtccaaagtgcacccatcagtgacgggtccaaggcg i calJac3.chr19 C 0 C 0 s mm10.chr1 178747193 553 + 195471971 ccatcacctcccc---ttgtgcgcatgtgcaagctt-tcaaaggtagtgatgaggttgct--ccaacatagagatg--tctgccttctccttttctagaagctgccaaattgctttttgtg-gttTAAGGTAATACAGAAATACTTGCATTTTCCCCGAGGAAGTCTTGCAAAAATTAGGCCAGT-TATTATTTTT-GAGTGCT---GGAGGGCCAGA-ACTGCTCCAA--GGATGAACACGCATTCCA--------GTCTGCATCTTTTCTGCT------TTGGGAAAC--AGAT--AAAAATACTGAGGATCTTGCCCA-GGCTTAATAGCAAGGGGCAGAAACCTAGTCAA--------------CTGTCCTCAAACCC-ATCTCTTAGCAGCAGTCCAAGCTCCAGGTGGTAGCAAGAGACCAGCTATACTATATTTAAAATGACATGAAGATAGCAGCCA--AAGACTCTAAG-GGGGCAGGGGGGTGGGGTGGGGAAAGGCAGGATGAGCCTTGGGCAGGTACTGCTGTTCCAGGGTG--TGGAAGAACAAGCAGATGGTGACTGAATTTATTCAGCATCCACTAATGAGT--CTGACCAAAAGT- i mm10.chr1 C 0 C 0 s canFam3.chr7 36323374 580 + 80974532 ----tgtgtcccc---ttgttcacatgggggaatttctcaaggatggcagtggaattg----ctaagtcatgggtatgtggatctcttccttttctagaaagtgccagattatttttcatgtttgtGAGGTGTCCTATAGCCACCGGAGTTTCCCTTGTGGACAATTC-CATAAATGGTGCCCGTGTaatatttttggagtgcatacgttgggccaggaaatgttctaaggggctttacatg-atgcaacacatttaatcctcacctattccttttgcaaatgaagaaactggcatacaaagagcttgcaggtcttgcctatgatcatagagcca-gtgacagggcctgttcagaccca--ggcagtatagttcccaagccctatccttaaATTGGAGGCTGTGCTCAAAGTCCCCGAGAGACATCAACCCCACCATGGTTATAGTGGTACCAAGATACCAGCTCCATTGCCACCAGG-AAATCTCT-G-------------TAGAAGGAAGCAGCCTTTCTAGAGTGTTACTGCTATATAGAT-TAGGAAGAAGAGCCAGATGGTTGCTGAATCCACCTGAAGTCCACCGATCCGGGGCTGATCAGGGTCT i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226259260 891 - 229942017 M a score=562349.000000 s hg38.chr1_KI270759v1_alt 152750 205 + 425601 aaattccaggctctagacgca-catggcagccaggttctttgctccctggctctcgctgtctcactCTC----------------CCTTGCTCCCTCCTTCCCTGTGTATTCCTGAAGGCATATAGCT-ACATCTTCATGTGCTTTTAA-TTTCTTTTAGCCTAGAGTAGAC-GCTCATAATAGAAAGGTCAAATAAAATTTTTTAGGAGTAGTAATGGATGTAA s panTro4.chr1 224904057 221 + 228333871 AAATTCCAGGCTCTAGACGCA-CATGGCAGCCAGGTTCTTTGctccctggctctcgctgtctcactctctcttgctccctctctcccttgctccctccttccctGTGTATTCCTGAAGGCATATAGCT-ACATCTTCATGTGCTTTTAA-TTTCTTTTAGCCTAGAGTAGAC-GCTCATAATAGAAAGGTCAAATAAATTTTTTTAGGAGTAGTAATGGATGTAA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140152307 221 - 143122389 AAATTCCGGGCTCTAGACGCA-CACGGCAGCCAGGTTCTTTGCTCCCTGGATCTTGCTTTCTCACTctctcttgctccctcgctcccttgctccctccttccctGTGTATTCCTGAAGGCATATAACT-ACATCTTCATGTGCTTTTAA-TTTCTTTTAGCCTAGAGTAGAC-GCTCGTAATAGAAAGGTCAAATAAATTTTTTTAGGACTAGTAATGGATGTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16866667 222 - 229590362 aaaTTCCAGGCTGTAGATGCA-TATGGCTGCCAGGCTCTTTGCTCCCTGGctctcgctctctcactctctcttgctccctctctcccttgctccctcCTTCCCTGTGTATTCCTGAAGGCATATAGCT-ACATCTTCATGTGCTTTTAA-TGTCTTTTAGCCTAGAGTAGACTGCTTGTAATAGAAAGGTCAAATAAATTTTTTTAGGAGTAGTAATGGATATCA i rheMac3.chr1 I 301 C 0 s macFas5.chr1 223628989 222 - 227556264 aaaTTCCAGGCTGTAGATGCA-TATGGCTGCCAGActctttgctccctggctctcgctctctcactctctcttgctccctctctcccttgctccctcCTTCCCTGTGTATTCCTGAAGGCATATAGCT-ACATCTTCATGTGCTTTTAA-TGTCTTTTAGCCTAGAGTAGACTGCTTGTAATAGAAAGGTCAAATAAATTTTTTTAGGAGTAGTAATGGATATCA i macFas5.chr1 I 299 C 0 s papAnu2.chr1 16680443 222 - 220367699 aaattccaggctgTAGATGCA-TATGGCTGCCAGgctctttgctccctggctctcgctctctcactctctcttgctccttctctcccttgctccctccttccctgtgTATTCCTGAAGGCATATAGCT-ACATCTTCATGTGCTTTTAA-TGTCTTTTAGCCTAGAGTAGACTGCTTGTAATAGAAAggtcaaataaatttttttaggaGTAGTAATGGATATCA i papAnu2.chr1 I 326 C 0 s chlSab2.chr25 82478457 222 + 85787240 aaattccaggCTGTAGATGCA-TATGGCTGCCAGGCTCTTGGCTCTCTGGCTCTTGCTctctcactctctcttgctccctctctcccttgctccctccttccctGTGTGTTTCTGAAGGTGTATAGCT-ACATCTTCATGTGCTTTTAA-TGTCTTTTAGCCTAGAGTAGACTGCTTGTAATAGAAAGGTCAAATAAATTTTTTTAGGAGTAGTAATGGATATCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14159831 205 - 49578535 aaattccaggctctagacgca-catgccagccaggttctttgc----------------tctcaccctctctTGctccctctctcccttcctccctccttccctGTGTATTCCTGAGGGCGTAGAGCT-ACATCTTCATGTGCTTTCAA-TTTCTTTTAGTCTAGACTAGACTGCTCGTAATGGAAAGGTCAAATAAA-TATTTTAGGAGTCGTAATGGATGTCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178747746 169 + 195471971 CCGTTCCAGGCTCCATATGC---------TCCGAATTCAGT--------------------------------------TCCATCCTTTCCTGCCTGCTTCACTG--------TAGAGGTTCGTTGCTCATATCTTCATGCACTTTAAAGTTCCTTTTAACCTAGGACAGGCGACTTGCCACAGAAAGGTCAAATAAA-TTTTTTAGAAGCAATAACGGATGCAA i mm10.chr1 C 0 C 0 s canFam3.chr7 36323954 174 + 80974532 GGATCCCACGCTCTGAATGCAGCGTGCCAGCCACATTGTT------------------------------------------CTCAGTTTCTCCAT------CTGTGTGTTCATAAAGTCATGTCACT-ACATCTCCATGCACTTCTAA-TTTCTTTTAGTCTAGGGTAGACCGCTTGCAATATAAAGGTCAAATACA-TTCTGTAGGAGTAGAAATGTATAGAA i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226259260 891 - 229942017 M a score=2918786.000000 s hg38.chr1_KI270759v1_alt 152955 758 + 425601 TCTTGTACATGTACATGTTAATTGCAGCACTTTAAT-CCCCATTCTAAGTACCAAACTTTCCGGATTAATTTCCTGCATCTGTTGGTAACACGGGACTCAGTCTTCTGACCAGATTCTTTGCCCAAGGGCCCTCATTTACTAATGAGTAATCACTGCAA-TTTCAG-----AGAAAATGCTACTGGTACACTCATGTTTGAACATTCATCAAATATGACGTGAGCCCAGTTAGGAGAGATGTTAGCGTCCTTAGCCTACAAATAAGGGCATAGAATTAAATCTCCCCACGCTATAATTTTGTTGGGGTTATTACTTGCATCAATGTTTGGAACAGTTGGTGATAAA--ACGTTTCATGGTCTTACAGCTCAGTAGATAGGAGCATGTCATGA----GTCAGGCTTACCAAAGGACTTACTGCAGACTTACTTCCCCTTGCCTCCTGTGATTCAAGCCAATTTTGCAAAGAGAAGACAGAGGTGGAAGAGGAAGTCCCTTCAGCAGGAATGCATTTCTCT-TTGTGCACATATCACAGACACACAGCACTGACACACTAATTATAGCTTTAGGTTGAGCATTTCCAGTTTCTGCATTTTG----TTTGCAAACAGCCCATTATTTCTATCCTGTGTGCTGGA-------AAAACACAAA--ATGAAGCA----------GTCTAATCACTACTGTTTCTGG-TAGGTCCAGCTGTCTACCTGTCTCCCCTCTTTTGGTTTTA-TTTTTTTCAGGGTGGGCCTGTAACTCCTCTTCTATCCCCACCCGATTTTGT------------------------------------TTTT s panTro4.chr1 224904278 757 + 228333871 TCTTGTACATGTACATGTTAATTGCAGCACTTTAAT-CCCCATTCTAAGTACCAAGCTTTCCGGATTAATTTCCTGCATCTGTTGGTAACACGGGACTCAGTCTTCTGACCAGATTCTTTGCCCAAGGGCCCTCATTTACTAATGAGTAATCACTGCAA-TTTCAG-----AGAAAATGCTACTGGTACACTCATGTTTGAACATTCATCAA-TATGACGTGAGCCCAGTTAGGAGAGATGTTAGCGTCCTTAGCCTACAAATAAGGGCATAGAATTAAATCTCCCCACGCTATAATTTTGTTGGGGTTATTACTTGCATCAATGTTTGGAACAGTTGGTGATAAA--ACGTTTCATGGTCTTACAGCTCAGTAGATAGGAGCATGTCATGA----GTCAGGCTTACCAAAGGACTTACTGCAGACTTACTTCCCCTTGCCTCCTGTGATTCAAGCCAATTTTGCAAAGAGAAGACAGAGGTGGAAGAGGAAGTCCCTTCAGCAGGAATGCATTTCTCT-TTGTGCACATATCACAGACACACAGCACTGACACACTAATTATAGCTTTAGGTTGAGCATTTCCAGTTTCTGCATTTTG----TTTGCAAACAGCCCATTATTTCTATCCTGTGTGCTGGA-------AAAACACAAA--ATGAAGCA----------GTCTAATCACTACTGTTTCTGG-TAGGTCCAGCTGTCTACCTGTCTCCCCTCTTTTGGTTTTA-TTTTTTTCAGGGTGGGCCTGTAACTCCTCTTCTGTCCCCACCCGATTGTGT------------------------------------TTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226260153 760 - 229942017 TCTTGTACATGTACATTTTAATTGCAGCACTTTAATCCCCCATTCTAAGTACCAAACTTTCCAGATTAATTTCCTGCATCTGTTGGTAACATGGTACTCAGTCTTCTGACCAGATTCTTTGCCCAAGGGCCCTCATTTACTAATGAGTAATCACTGCAATTTTCAG-----AGAAAATCCTACTGGTACAATCATGTTTGAACATTCATCAAATATGACGTGAGCCCAGTTAGGAGAGATGTTAGCGTCCTTAGCCTACAAATAAGGGCATAGAATTAAATCTCCCCATGCTATAATTTTGTTGGGGTTATTACTTGCATCAGTGTTTGGAACAGTTGGTGATAAA--ACGTTTCATGGTCTTACAGCTCAGTAGATAGGAGCATGTCATGA----GTCAGGCTTACCAAAGGACTTACTGCAGACTTACTTCCCCTTGCCTCCTGTGATTCAAGCCAATTTTGCAAAGAGAAGACAGAGGTGGAAGAGGAAGTTCCTTCAGGAGGAATGCATTTCTCT-GTGTGCACATATCACAGACACATAGCACTGACACATTAATTATAGCTTTAGGTTGAGCATTTCCAGTTTCTGCATTTTG----TTTGCAAACAGCCCATTATTTCTATCCTGTGTGCTGGA-------AAAACACAAA--ATGAAGCA----------GTCTAATCACTACTGTTTCTGG-TAGGTCCAGCTGTCCACCTGTCTCCCCTCTTTTGGTTTTA-TTTTTTTCAGGGTGGGCCTGTAACTCCTCTTCTATCCCCACCCGACTGTGT------------------------------------TTTT i ponAbe2.chr1 M 891 C 0 s nomLeu3.chr5 140152528 759 - 143122389 TCTTGTACATGTACATTTTAATTGCCGCACTTTAAT-CCCCATTCTAAGTACCAAACTTTCCAGATTAATTTCCTGCATCTGTTGGTAACACGGTGCTCAGTCTTCTGACCAGATTCTTTGCCCAAGGGCCCTCATTTACTAATGAGTAATCACTGCAATTTTCAG-----AGAAAATGCTACTGGTACAATCATGTTTGAACATTCATCAAATATGACGTGAGCCCAGTTAGGAGAGATGTTAGCGTCCTTAGCCTACAAATAAGGGCACAGAATTAAATCTCCTCATGCTATAATTTTGTTGAGGTTATTACTTGCATCAGTGTTTCGAACAGTTGGTGATAAA--ACGTTTCATGGTCTTACAGCTCAGTAGATAGGAGCATGTCATGA----GTCAGGCTTACCAGAGGACTTACTGCAGACTTTCTTCCCCTTGCCTCCTGTGATTCAAGCCAGTTTTGCAGAGAGAACGCAGAGGTGGAAGAGGAAGTCCCTTCAGCAGGAATGCATTTCTCT-TTGTGCACATATCACAGACACACAGCGCTGACACACTAATTATAGCTTTAGGCTGAGCATTTCCAGTTTCTGCATCTTG----TTTGCACACAGCCCATTATTTCTATCCTGTGTGCTGGA-------GAAACACAAA--ATGAGGCA----------GTCTGATCACTAGTGTTTCTGG-TAGGTGCAGCTGTCCACCTGTCTCCCCTCTTTTGGTTTTA-TTTTTTTCAGGGTGGGCCTGTAACTCCTCTTCTATCCCCACCCGATTGTGT------------------------------------TTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16866889 790 - 229590362 TCTTGTACATGTACATTTTAATTGCAGCACTTTAAT-CCCCATTCTAAGAGCCAAACTTTCCGGATTAATTTATTGCATCTGTTGGTAACGCGGTACTCAGTCTTCTGACCAGATTCTTTGCCCAAGGGCCCTCATTTACTAATGAGTAATCACTGCAATTTTCAG-----AGAAAATGCTACTGGTACAATCATGTTTGAACATTCATCAAATATGACGTGAGCCCAGTTAGGAGAGATGTTAGCGTCCTTAGCCTACAAATAAGGGCATAGAATTAAATCTCCCCATGCTATAATTTTGTTGGGGTTATTACTTGCATCAGTGTTTGGAACAGTTGGTGATAAA--ACGATTCATGGTCTTATAGCTCAGTAGATAGGAGCATGTCATGA----GTCATGCTTACCAAAGGACTTACTGCAGACTTACTTCCCCTTGCCTTCTATGATTCAAGCCAATTTTGCAAAGAGAAGACAGAGGTGGAAGAGGAAGTCCCTTCGGCAGGAATGCATTTCTCT-TTGTGCACATATCACAGACACGCAGCACTGACACACTAATTATAGCTTTAGGTTGAGCATTTCCAGTTTCTGCATTTTG----TTTGCAAACAGCCCATTATTTCTATCCTGTGTGCTGGC-------AAAACACAAA--ATGAAGCA----------GTCTAATCACTAGTGTTTCTGG-GAGGTCTAGTTGTCCACCTGTCTCCCCTCTTTTGGTTTTATTTTTTTTCAGGTTGGGCCTGTAACTCCTCTTCTATCCCCACCCGATTGTGTGtttttcttttcttttttctttttc------ttttttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223629211 793 - 227556264 TCTTGTACATGTACATTTTAATTGCAGCACTTTAAT-CCCCATTCTAAGAGCCAAACTTTCCGGATTAATTTATTGCATCTGTTGGTAACGCGGTACTCAGTCTTCTGACCAGATTCTTTGCCCAAGGGCCCTCATTTACTAATGAGTAATCACTGCAATTTTCAG-----AGAAAATGCTACTGGTACAATCATGTTTGAACATTCATCAAATATGACGTGAGCCCAGTTAGGAGAGATGTTAGCGTCCTTAGCCTACAAATAAGGGCATAGAATTAAATCTCCCCATGCTATAATTTTGTTGGGGTTATTACTTGCATCAGTGTTTGGAACAGTTGGTGATAAA--ACGATTCATGGTCTTATAGCTCAGTAGATAGGAGCATGTCATGA----GTCATGCTTACCAAAGGACTTACTGCAGACTTACTTCCCCTTGCCTTCTATGATTCAAGCCAATTTTGCAAAGAGAAGACAGAGGTGGAAGAGGAAGTCCCTTCGGCAGGAATGCATTTCTCT-TTGTGCACATATCACAGACACGCAGCACTGACACACTAATTATAGCTTTAGGTTGAGCATTTCCAGTTTCTGCATTTTG----TTTGCAAACAGCCCATTATTTCTATCCTGTGTGCTGGC-------AAAACACAAA--ATGAAGCA----------GTCTAATCACTAGTGTTTCTGG-GAGGTCTAGTTGTCCACCTGTCTCCCCTCTTTTGGTTTTATTTTTTTTCAGGTTGAGCCTGTAACTCCTCTTCTATCCCCACCCGATTGTGTGtttttcttttcttttttctttttc-tt--tttttttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16680665 792 - 220367699 TCTTGTACATGTACATTTTAATTGCAGCACTTTAAT-CCCCATTCTAAGAGCCAAACTTTCCGGATTAATTTATTGCATCTGTTGGTAACACGGTACT--GTCTTCTGACCAGATTCTTTGCCCAAGGGCCCTCATTTACTAATGAGTAATCACTGCAGTTTTCAG-----AGAAAATGCTACTGGTACAATCATGTTTGAACATTCATCAAATATGACGTGAGCCCAGTTAGGAGAGATGTTAGCGTCCTTAGCCTACAAATAAGGGCATAGAATTAAATCTCCCCATGCTATAATTTTGTTGGGGTTATTACTTGCATCAGTGTTTGGAACAGTTGGTGATAAA--ACGATTCATGGTCTTATAGCTCAGTAGATAGGAGCATGTCATGA----GTCATGCTTACCAAAGGACTTACTGCAGACTTACTTCCCCTTGCCTTCTATGATTCAAGCCAATTTTGCAAAGAGAAGACAGAGGTGGAAGAGGAAGTCCCTTCAGCAGGAATGCATTTCTCT-TTGTACACATATCACAGACACACAGCACTGACACACTAATTATAGCTTTAGGTTGAGCATTTCCAGTTTCTGCATTTTG----TTTGCAAACAGCCCATTATTTCTATCCTGTGTGCTGGC-------AAAACACAAA--ATGAAGCA----------GTCTAATCACTAGCGTTTCTGG-GAGGTCTAGTTGTCCACCTGTCTCCcctcttttggttttattttttttcaggttgGGCCTGTAACTCCTCTTCTATCCCCACCCgattgtgtgtttttcttttcttttcttttctttttt--tttttttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82478679 796 + 85787240 TCTTGTACATGTACATTTTAATTGCAGCACTTTAAT-CCCCATTCTAAGAGCCAAACTTTCCGGATTAATTTATTGCATCTGTTGGTAACACGGTACTCAGTCTTCTGACCAGATTCTTTGCCCAAGGGCCCTCATTTACTAATGAGTAATCACTGCAATTTTCAG-----AGAAAATGCTACTGGTACAATCATGTTTGAACATTCATCAAATATGACGTGAGCCCAGTTAGGAGAGATGTTAGCGTCCTTAGCCTACAAATAAGGGCATAGAATTAAATCTCCCCATGCTATAATTTTGTTGGGGTTATTACTTGCATCAGTGTTTGGAACAGTTGGTGATAAA--ACGATTCATGGTCTTATAGCTCAGTAGATAGGAGCATGTCATGA----GTCATGCTTACCAAAGGACTTACTGCAGACTTACTTCCTCTTGCCTTCTATGATTCAAGCCAATTTTGCAAAGAGAAGACAGAGGTGGAAGAGGAAGTCCCTTCAGCAGGAATGCATTTCTCT-TTGTGCACATATCACAGACACACAGCACTGACACACTAATTATAGCTTTAGGTTGAGCATTTCCAGTTTCTGCATTTTG----TTTGCAAACAGCCCATTATTTCTGTCCTGTGTGCTGGC-------AAAACACAAA--ATGAAGCA----------GTCTAATCACTAGTGTTTCTGG-GAGGTCTAGCTGTCCACCTGTCTCCCCTCTTTTGGTTTTATTTTTTTTCAGGTTGGGCCTGTAACTCCTCTTCTGTCCTCACCTGACTGtgttttttttgttgttttttgtttttgtttttgtttttgtttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14160036 746 - 49578535 TCTTGTCCAGGGACGCTTTAATTGCAGCACTTTCAT-CCCCATTCTAAGTGCCAAACTTCCAGGATTAATTTCTTGCATCTGTTGGTAACATGGTACTCAGTCTTCTGACCAAATTCTTTGCCCAAAGGCCCTCATTTACTAATGAGTAATCACTGCAGTTTTCAG-----AGAAAATGCTACTGGTACAATCATGTTGGAACATTCATCAAATATGACGCGAGCCCAGTTAGGAGAGATGGTAGCGTCCTTAGCCTACAAATAAGGGCAGAGAATGAAATCTCCCCACACTATAATTTTGTTGGGGTTATTACTTGCATCCGTGTTTGGAACGGTTGGTAATAAA--ACGATTCATGGTCTTACGATTCGGTTGATAGGAGCATGTCATGA----GTCAGGCTTACCAGACGACTTACTGAAGGCTGCCTTCCCCTTGCCTGCTATGATTCAAGCCAGTTTTGGACAGAGAAGACAGAGGTGGAAGAGAAAGTCCCTTGAGCAGGAA--------GCT-TTGTACACGTATCACGGACACAGAGCACGGACAGACTGATTATAGCCTTGGGTTGAGCATTTCCTGTTGCTGCTTTTTGTTTCTTTGCCAACAGCCCGTCATTTCTGTCCCGCGTGCTGGG-------AAAACACGAA--GTGAAGCA----------GGCCAGTCACTACTG--ACTGG-CAGGCCCAGCAGCCCACCCGCCTCCCCTCTTCTGG--TCA-CTGATTTTGGGTTGGG-CTGTGACTCCTC-----TCCTCACTCAGTTGTGT-----------------------------------TTTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178747915 738 + 195471971 -CTTGTACATGTGAATTTTAATTGCAACACTCTAAT-CCCCATTCCAAGTGCCAAACTTTCAGGATTAATTTGTTGCATGTGTTGGTAACAGGGCACTCAGTCTTCGGAGCGGATTCATTGCCCGAGGGCCCTCATTTGCTAATGAGTAATTGTTGCAATTTTCAG-----AGAAAATGCTACTGGTACAATCATGTTTGAGCATTCATCAAATATGACGTGAGCCCAGTTAGGAGAAACGTTAGCGTCCTTAGCCTGCAAATAAAAGCCAAGCATTCATTTCCAGCATG--GTAATTTCCCTAGGCTGGTCACCTCCATTATCATTCGGAACAACCGGTGA---------ACTGTAGGTAGTAC----CTGCGGGTAGGAGCAGGTTTTAGCACTGTTAAGT---------------CTGTAGTCTTG--TTCCATTGTATCTTGTCACTCAGGCCCATTTTGGA---AGTAGGCAGGGGTGGAAGAGGAAGCCACTTCGGTAGGAATGCA--TCTCT-GTGTGCACACATCACAGAC----AGCAATGACATGCTAATTACAGCTTTAGACGGAGCATTTCCTCTTTCTGCATTTTG----TTTGCAAACACCCAATTATTTCCATCCTGCGGTCTGGAGAAGAGGAAAAAAAAAA--GGAAAGCAAATCCAAGGGAGTTGATCAGTA--GTTTCTGC-AAGGCTC-GCTGCCTACCTATCTCCTCTGTTGTGGCTTTTCTTCCCGACAGGTTGGAATTTGAACTCTGCTTGCTTCCCAATTTAGTTATTC------------------------------------TTTT i mm10.chr1 C 0 I 1644 s canFam3.chr7 36324128 758 + 80974532 TCTTGTACGTGTAAATTTTAATTGCAGGGCTTTAAT-CCCCATTCTGAGCGCCAAACTTTCAGGACTAATTTGTTGCATCTGTTGGTAACACAGTGCTCAGTCTTTGGACCAGATTCTTTGCCCAAGGGCCCTCATTTACTAATGAGTAATCGCCGCAATTTTCAGGAAAAAAAAAATGCTACTGGTACGGTCATGTTTGAACATTCATCAAATATGACGGGAGCCCAGTTAGGAGAAATGTTAGCGTCCTTGGCCGGCAAATAAGGGCATAGAATTAA-TCTCCCTACACTGTGATTTTCCTAGAATCATTCCTGCCTTCAGCACTTGCAACTGTGAGTGAGGAATTTCTACTTGTGGCCTTATAGCCTAGTCGATAGGACCATGTGGGGC----ATGAGGCTTGCAGAGTGGCTGAGTGAGGCTTTACTTTCAATTGCCTT---------------ATATTAGGAAAGAAAGGCCGTGGGGGAGGCCGAAGCCACTTCAGTAGGAATACATTCCTCTGGTATAGATGAATCATAGAAACACACCACTGACAAACTAATTATAGCTTTAACTTGAGCATTACCTCGTTCTGCATTTTG----TTTGCAAACAGCCAATTACTTCCATCCTGCGTGCTGGAAAA----AAAACAAAAACCACGAAGCA----------GACCAACCAGATATGTTTCTGGTTAAGGTCAGCTGTCCACTTACTGTCCCTCTCTTGGTTTTACTTTTTTTCCGGTTGGGTTTCTAACTCCTCTTCCATCCCCACCCAGCTATTT------------------------------------CTTG i canFam3.chr7 C 0 C 0 a score=958891.000000 s hg38.chr1_KI270759v1_alt 153713 317 + 425601 TGGAATCTTTCTAACCTGCCTGCAGACCAGGGGTTGCAGTTCCAGCTTTCCATGATCTTACCTGTGTTCAGCCTTATCTATTT-----TGTATTGAAAGAAACAGTCAACACAGTCAAATCCTTTATACCTTCCTTAAGACTGCACTGGTGT---------GGCCTACAT--------------AG----CCACCTGTGTGCCAGCTGCTGTTTGTCACTAGGAAGACAGGGTGGGATGTGCGGG-TGGTATGACCGAGGTGTGAAGAATCTCAGGGTTGGCTGTGTCAGTGAAGGAGTGAACGGGCACTTTGGGGTCACCTGAACTGGGA-------------------------GAACTAAGTTCTCAAGCAG----- s panTro4.chr1 224905035 317 + 228333871 TGGAATCTTTCTAACCTGCCTGCAGACCAGGGGTTGCAGTTCCAGCTTTCCATGATCTTACCTGTGTTCAGCCTTATCTATTT-----TGTATTGAAAGAAACAGTCAACACAGTCAAATCCTTTATACCTTCCTTAAGACTGCACTGGTGT---------GGCCTACAT--------------AG----CCACCTGTGTGCCAGCCGCTGTTGGTCACTAGGAAGACAGGGTGGGATGTGCGGG-TGGTATGACCGAGGTGTGAAGAATCTCAGGGTTGGCTGTGTCAGCGAAGGAGTGAACGGGCACTTTGGGGTCACCTGAACTGGGA-------------------------GAACTAAGCTCTCAAGCAG----- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226260913 331 - 229942017 TGGAATCTTTCTAACCTGCCTGCAGACCAGGGGTTGCAGTTCCAGCTTTCCGTGATCTTACCTGTGTCCAGCCTTATCTATTT-----TGTATTGAAAGAAACAGTCAACACAGTCAAATCTTTTATACCTTCCTCAACACTACACTGGTGT---------GGCCTACGTAGCCCCTGTGTGCCAG----CCACCTGTGTGCCAGCCACTGTTTGTCACTAGGAAGACAGGGTGGGATGTGTGGG-TGATACGACCGAGCTGTGAAGAATCTCAGGGTTGGCTGTGTCAGTGAAGGAGTGAATGGGTACTTTGGGGTCACCTGAACTGGGA-------------------------GAACTAAGCTCTCAAGCAG----- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140153287 341 - 143122389 TGGAATCTTTCTAACCTGCCTGCAGACCAGGGGTTGCAGTTCCAGCTTTCCGTGATCTTACCGGTGTTCAGCCTTATCTATTT-----TGTATTGAAAGAAACAGTCAACACAGTCAAATCCTTTATACCTTCCTTAAGACTACACTGGTGT---------GGCC-ACAT--------------AG----CCACCTGTGTGCCAGCCACTGTTGGTCACTAGGAAGACAGGGTGGGATGTGTGGG-TGATATGACCCAGCGGTAAAGAATCTCAGGGTCGGCTGTGTCAGTGAAGGAGTGAATGGGTACTTTGGGGTCACCTGAACTGCGAGAACTAAGTTCTAAAGCAGAAAGAGGAACTAAGCTCTCAAGCAG----- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16867679 319 - 229590362 ttGAATCTTTCTAACCTGCCTGCAGACCAGGGGTTGCAGTTGCAGCTTTCTGTGATCTTACCTG----------------------------TTGAAAGAAACAGTCAACACAACCAAATCCTTTATACCTTCCTTAAGATTGCACTGGTGT---------GGCCTACAG--------------AG----CCACCTGTGTGCCAGCCACTGTTTGTCACTAGGAAGACAGGGTGGGATGTGTGGG-TGATATGACCCAGCTGTAAAGAATCTCAGGATTGGCTGTGTCAATGTAGGAGTGAATGGGTACTTTGGGGTCACCTGAACGGGGAGAACTCAGTTCTAAAGCAAAAACAGGAACTAAGCTCTCAGGCAG----- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223630004 335 - 227556264 ttGAATCTTTCTAACCTGCCTGCAGACCAGGGCTTGCAGTTGCAGCTTTCTGTGATCTTACCTGTGTTCAGCCTTATC------------TATTGAAAGAAACAGTCAACACAACCAAATCCTTTATACCTTCCTTAAGACTACACTGGTGT---------GGCCTACAG--------------AG----CCACCTGTGTGCCAGCCACTGTTTGTCACTAGGAAGACAGGGTGGGATGTGTGGG-TGATATGACCCAGCTGTAAAGAATCTCAGGATTGGCTGTGTCAATGTAGGAGTGAATGGGTACTTTGGGGTCACCTGAACGGGGAGAACTCAGTTCTAAAGCAAAAACAGGAACTAAGCTCTCAGGCAG----- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16681457 335 - 220367699 ttgaatgtttctAACCTGCCTGCAGACCAGGGGTTGCGATTCCAGCTGTCTGTGATCTTACCTGTGTTCAGCCTTATC------------TATTGAAAGAAACAGTGAACACAACCAAATCCTTTATACCTTCCTTAAGACTACACTGGTGT---------GGCCTACAG--------------AG----CCACCTGTGTGCCAGCCACTATTTGTCACTAGGAAGACAGGGTGGGATGTGTGGG-TGATATGACCCAGCTGTAAAGAATCTCAGGATTGGCTGTGTCAATGTAGGAGTGAATGGGTACTTTGGGGTCACCTGAATGGGGAGAACTCAGTTCTAAAGCAAAAACAGGAACTAAGCTCTCAGGCAG----- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82479475 335 + 85787240 ttGAATCTTTCTAACCTGCCTGCAGACCAGGGGTTACGATTCCAGCTTTCTGTGATCTTACTTGTGTTCAGCCTTATC------------TATTGAAAGAAACAGTCAACACAGCCAAATCCTTTAGACCTTCCTTAAGACTACACTGGTGT---------GGCCTACAG--------------AG----CCACCTGTGTGCCAACCACTGTTTGTCACTAGGAAGACAGGGTGGGATGTGTGGG-TGATATGACCCAGCTGTAAAGAATCTCAGGGTTGGTTGTGTCAGTGTAGGAGTGAATGGGTACTTTGGGGTCACCTGAACGGGGAGAACTCAATTCTAAAGCAAAAACAGGAACTAAGCTCTCACGTAG----- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14160782 325 - 49578535 TTTAATCTTTCTAACCTGCCTGCAGACCAGCGGTCAGAGTTCCAGGTTTCTGTT----------------GCCTTATCTCTCT-----TGTGTTGAAAGAAACAGTCAACACAGTCGAGTCCTTCATACCTTCCCTAAGACCACACTGATGT---------GGTCTGCGT--------------AG----CCACCTGTGTCCCAGCCACTGTTTGTCACTAGGAAGACGGGGTGGGATGTGAGGG-TGACAGGACCCAGCTATAAAGCATCTCGGGGTTGGCTGTGTCAGTGGAGCAGTGAATGGGTACTTTGGGGTCATCTGAACTGGAAGACCCAAAATCTAAAGCAAAAACAGGAACT-AGCTCTCAAGCAG----- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36324886 337 + 80974532 ---TGTCTTTCTGACCTGCCTCCACACTGGTGGTTGGAGTTCCAGGTGTGTGTTATCTTATCCATGTTCAGCCTTATCTACTTTGGAATGTCCTGAGAG----AGTCAACAAAGCCAAATACCTC-TATCTTCCTTGAGACTACAAGGACGTCCATCCCACTGCATACAC--------------AGTGCATCTTCTGTACATGGGGCACTGCTGGTCATTAGGAGGATGGGATGAGGTATATAAGCCAGTGTGACCTTGCCATGAAGGACCTGAGGATTGGCTGAGTCAATAAAAGAATGAATGGGTACTTTTGGGTCACCTGAACTAGAA---------------------AAAACACCTGAGATCTAAAGAGAGGCGG i canFam3.chr7 C 0 C 0 e mm10.chr1 178748653 1644 + 195471971 I a score=381762.000000 s hg38.chr1_KI270759v1_alt 154030 150 + 425601 -CAA---AAACAGA-GGCACAAAAGTGG-ATAAAAACCCAATAGTGCA-------GACCTGGAGCTAGGCT--TCTTCTCTCAGTGGTGGCACAGAAAAGGATGAAAGTCTC-TGAAATGTGCA--------CCTGTGATTCAGGTTGCCACCCACTGAAAAATCATGATTCAA s panTro4.chr1 224905352 150 + 228333871 -CAA---AAACAGA-GGCACAAAAGTGG-ATAAAAACCCAATAGTGCA-------GACCTGGAGCTAGGCT--TCTTCTCTCAGTGGTGGCACAGAAAAGGATGAAAGTCTC-TGAAATGTGCA--------CCTGTGACTCAGGTTGCCGCCCACTGAAAAATCATGATTCAA i panTro4.chr1 C 0 I 733 s ponAbe2.chr1 226261244 150 - 229942017 -CAA---AAACAGA-GGCGCGAAAGTGG-ATGAAAACCCCATAGTGCA-------GACCTGGAGCTAGGCT--TCTTTTCTCAGTGGCGGCACAGAAAAGGATGAAAGTCTG-TGAAATGTGCA--------CCTGTGATTCAGGTCGCCGCCCACTGAAAAATCACGATTCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140153628 150 - 143122389 -CAA---AAACAGA-GGCACAAAAGTGG-CTAAAAACCCAGTAGTGCA-------GCCCTGGAGCTGGGCT--GCTTTTCTCAGTGGTGGCTCAGAAAACGATGAAAGTCTC-TGAAATGTGCA--------CCTGTGATGCAGGTTGCCGCCCACTGAAAAATCATGATTCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16867998 148 - 229590362 -CAA---AAAGAGA-GGC-CGAACATGG-ATAAAAGCCCGGTAGTGCA-------GACCTGGAGCTGGGCG--TCTTTTCTCGATGGTGGCACAGAAAAGGATGAAAGTCTC-GGAAATGTGGA--------CCTGTGATTCAGGATGCCGCCCCGTGAAAAA-CATGATTCAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223630339 148 - 227556264 -CAA---AAAGAGA-GGC-CGAACATGG-ATAAAAGCCCGGTAGTGCA-------GACCTGGAGCTGGGCG--TCTTTTCTCGATGGTGGCACAGAAAAGGATGAAAGTCTC-GGAAATGTGGA--------CCTGTGATTCAGGATGCCGCCCCGTGAAAAA-CATGATTCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16681792 149 - 220367699 -CAA---AAAGAGA-GGC-CGAACATGG-ATAAAAACCCGATAGTGCA-------GACCTGGAGCTGGGCG--TCTTTTCTCGATGGTGGCACAGAAAAGGATGAAAGTCTC-AGAAATGTGGA--------GCTGTGATTCAGGATGCCGCCCCGTGAAAAATCATGATTCAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82479810 149 + 85787240 -CAA---AAAGAGA-GGC-CGAACATGG-ATAAAAACCCGATAGTGCA-------GACCTGGAGCTAGGCG--TCTTTTCTCGACGGTGGCACAGAAAAGGATGAAAGTCTT-GGAAATGTGGA--------CCTGTGATTCAAGATGCCGCCCCGTGAAAAATCATGATTCAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14161107 147 - 49578535 -CAA---AAACAGA-GGTGCACACATGG-GTAAAATCCCAGCACCGCA-------GACCTGG-GCTGTGTT--CTGGTTCTCGGTGGT-CCGCAGAAAAGGATG-GAGTCTC-TGAAGTGCGGG--------TCTGTGATTCAGGTTTCCGCCTAATGCAGAATCATCATTTGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178750297 156 + 195471971 -CAA---AAACAAATGGCAGGATGGGAG-ATGGGAGAATGGTGGTACAGTCTGGTGATCCAGTGCAAGGCTGCTCCTGTTTCTATGCAGGCACAAAAGGACACACCAAGCTC-GGGCATGTGGAGTATAAAGTCCATGACTAAGGTCTCTTCCTCTTTC-----CCT------- i mm10.chr1 I 1644 C 0 s canFam3.chr7 36325223 130 + 80974532 CCAAACCAGAAAGA-ACCAGTAGAGTGGCATACAAACCCGATACTGCA-------GATCTGGGGCTGAGTT--CCTGTTCTCTCTCATGGCAGATAAAAGGAGGAAAATCTCTTGAAAGGTGGA--------TCTGTGATTCAAAGTC-------------------------- i canFam3.chr7 C 0 C 0 a score=291910.000000 s hg38.chr1_KI270759v1_alt 154180 93 + 425601 GATCTCTCCTCCTCATAAACCTTTTTTTTTT--TTCCCTGCCTGCAGCCTAAGATAGAATTAGGAAGTCAAGAAAGGCTCTAGATGACTTTCAGA s panTro4.chr1 224906235 91 + 228333871 GATCTCTCCTCCTCGTAAACCTTTTTTTTTT----CCCTGCCTGCAGTCTAAGATAGAATTAGGAAGTCAAGAAAGGCTCTAGATGACTTTCAGA i panTro4.chr1 I 733 C 0 s ponAbe2.chr1 226261394 95 - 229942017 GATCTCTCCTCTTCATAAACCTTTTTTTTTTTTTTCCCTGCCAGCAGCCTAAGATAGAATTGGGAAGTCAAGAAAGGCTCTAGATGACTTTCAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140153778 91 - 143122389 GATCTCTCCTCCTCATAAACCTTTTTTTTTT----CCCTGCCTGCAGCCTAAGATAGAATTAGGAGGTCAAGAAAGGCTCTAGATGACTTTCAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16868146 87 - 229590362 GATCTCTCCTCCTCATAAACCCTTTTTTT------CCCTGCCTGCAGCCCAAG--AGAATTAGGAAGTCAAGAAAGGCTCTAGATGACTTTCAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223630487 87 - 227556264 GATCTCTCCTCCTCATAAACCCCTTTTTT------CCCTGCCTGCAGCCCAAG--AGAATTAGGAAGTCAAGAAAGGCTCTAGATGACTTTCAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16681941 87 - 220367699 GATCTCTCCTCCtcataaacctttttttt------ccctGCCTGCAGCCCAAG--AGAATTAGGAAGTCAAGAAAGGCTCTAGATGACTTtcaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82479959 88 + 85787240 GATCTCTCCTCCTCATAAACCTTTTTTTTC-----CCCTGCCTGCAGCCCAAG--ATAATTAGGAAGTCAAGGAAGGCTCTAGATGACTTTCAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14161254 93 - 49578535 GATCTCTCTTCCTTATAAACGTTTTTTTTTTTT--TTCTGCCTGCAACCTAAGGTAGAATTAGGAAGTCAAGAAAGGCTCTAGATGACTTTCGGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178750453 95 + 195471971 GATATCTCCCCCTCAGCCCCCCCGCCCCCAACCACCATCACTTGTAGTCCATGGAAGAATAAGGAAACCCAGAAAGGCACTAGATTATCTCAAGA i mm10.chr1 C 0 I 1162 s canFam3.chr7 36325353 83 + 80974532 --TCTCTCCACCCCCTCATTTTTTTTTTTTTTT--GTCTGCCTGTGACCTATGGATGAATGAGGAAGTCAAGAAATGCCCTAGATTA-------- i canFam3.chr7 C 0 C 0 a score=138556.000000 s hg38.chr1_KI270759v1_alt 154273 63 + 425601 GTG-ttttttgtttgtttgttttttctttttgagacagtctcgctctatcatctaggctggagt s panTro4.chr1 224906326 62 + 228333871 GTG-ttttttgtt-gtttgttttttctttttgagacagtctcgctctatcatctaggctggagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226261489 63 - 229942017 GTG-ttttttgtttgtttgtttgttctttttgagacactctcgctctaccatccaggctggagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140153869 64 - 143122389 GTGtttttttgtttgtttgttttttctttttgagacagtctcgctctatcatccaggctggagt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16868233 58 - 229590362 G-G-tttttt----gtttgttttttctttttgagacagtctcgctctgtcatccaggctggagt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223630574 58 - 227556264 G-G-tttttt----gtttgttttttctttttgagacagtctcgctctgtcatccaggctggagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16682028 58 - 220367699 g-g-tttttt----gtttgttttttctttttgagacagtctcgctctgtcatccaggctggagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82480047 58 + 85787240 G-G-tttttt----gtttgttttttctttttgagacggtctcgctctgtcatccaggctggagt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14161347 56 - 49578535 G-G-Cttgtt------ttgatttttctttttgagacagtctcgctctaccatctagggtggagt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36325436 14 + 80974532 -----------------------------------------------ATTATCT---CCAGAGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I a score=319441.000000 s hg38.chr1_KI270759v1_alt 154336 109 + 425601 gcagtggcatggtatcgtctcactacaacctctgtctcccaggttcaagtgattctcctgcctcagcctcctagcagctgagattacaag-----------tgcctggctaatttttgta s panTro4.chr1 224906388 109 + 228333871 gcagtggcatggcatcgtctcactgcaacctctgtctcccaggttcaagtgattctcctgcctcagcctcctagcagctgagattacgag-----------tgcctggctaatttttgta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226261552 109 - 229942017 gcagtggcatggtatcgtctcgctacaacctctgtctcccaggttcaagtgattctcctgcctcagcctcctagcaggtgagattacaag-----------tgcctggcgaatttttgta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140153933 109 - 143122389 gcagtggcatggtatcggctcgctacaacctctgtctcccgagttcaagggattctcctgcctcagcctcctagcagctgagattacaag-----------tgcctggctaatttttgtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16868291 109 - 229590362 gcagtggcatggtatcgtctcgctgcgacctctgtctcccacgttcaagtgattctcctgcctcagcctcctagcagctggggttacaag-----------tgcctggctaatttttgta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223630632 109 - 227556264 gcagtggcatggtatcgtctcgctgcgacctctgtctcccacgttcaagtgattctcctgcctcagcctcctagcagctggggttacaag-----------tgcctggctaatttttgta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16682086 109 - 220367699 gcagtggcatggtatcatctcactgcgacctctgtctcccacgttcaagtgattctcctgcctcagcctcctagcagctgggattacaag-----------tgcctggctaatttttgta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82480105 109 + 85787240 gcagtggcatggtatcgtctcactgcaacctctgtctcccacgttcaaatgattctcctgcctcagcctcctagcagctgggattacaag-----------tgcctggctaattttcgta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14161403 120 - 49578535 gcagtggtgctgtatcggctcactgcaacctctgcctcccaggttcaagcggttctccagcctcagcctccaaacagctgggattgcaagcatgcacaccacacccagctaatatttgta i calJac3.chr19 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I e canFam3.chr7 36325450 0 + 80974532 C a score=466112.000000 s hg38.chr1_KI270759v1_alt 154445 204 + 425601 -tttttaatagagacagggtttcaccatgttggtcgggct-gtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggccCAGAGgtttgtttttttt-gttttgtttttgtttttg---tttttCCAGAATTAGCACATCTTCTCTTCTCTGGGTCATTTTTC s panTro4.chr1 224906497 205 + 228333871 -tttttagtagagacagggtttcaccatgttggtcgggct-gtctcaaactgctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggccCAGAGGtttgtttttttttgttttgtttttgtttttg---tttttCCAGAATTAGCACATCTTCTCTTCTCTGGATCATTTTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226261661 203 - 229942017 -tttttagtagagacagggtttcaccatgttggtcgggct-gtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcctggccCAGAGGtttgtttttttt--tttgttttttgtttttt---gttttCCAGAATTAGCACATCTTCTCTTCTCTGGATCATTTTTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140154042 207 - 143122389 -tttttagtagagacagggtttcaccgtgttggtcaggct-gtctcaaactcctgacctcaggtgatctgcccacctcggcctcccaatatgctgggattacaggcatcagccaccacgcctggccCAGAGGtttgtttttttt-gttttgtttttgtttttgttttttttCCAGAATCAGTACATCTTCTCTTCTCTGGATCATTTTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16868400 188 - 229590362 -tttttactagagacaaggtttcaccatgttgatcgggct-gtcttgaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggcaagagccaccacgcctggccCAGCGGTGtttttttttt--------------ttttt---ttttttCAGAATTAGTACA---TCTCTTCTCTGGATCATTTTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223630741 182 - 227556264 -tttttactagagacaaggtttcaccgtgttgatcgggct-gtcttgaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggcaagagccaccacgcctggccCAGCAGTG------TTTT--------------TTTTT---TTTTTTCAGAATTAGTACA---TCTCTTCTCTGGATCATTTTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16682195 183 - 220367699 -tttttactagagacaaggtttcaccatgttgatcgggct-gtcttgaactcctgacctcaggtgatccgcccacctcggcctcccaaagagctgggattacaggcaagagccactacgcctggcccagcggtg-----ttttt--------------ttttt---ttttttcagaattagtACA---TCTCTTCTctggatcatttttt i papAnu2.chr1 C 0 I 120 s chlSab2.chr25 82480214 179 + 85787240 -ttttcactagagacaaggtttcaccatgttgatcgggct-gtcttgaactcctgacctcgggtgatccgcccacctcggcctcccaaagtgctgggattacaggcatgagccaccatgcctggccCAGAGGTG---------T--------------TTTTT---TTTTTTCAGAATTAGTACA---TCTCTTCTCTGGATCATTTTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14161523 194 - 49578535 -tttttagtagagaaagggttttaccatgttggccaggctggtctggaactcctgacctcagatgatccgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccCAGAGGTTTTCTTTTGTT------------GTTGTTT---TAATAGCAGAATTAGTCCATCTTCTCTTCTCTGGATCATTTTTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36325450 67 + 80974532 TTTCTTATAGCAGACTTAGTTT----------ATTATGCT-CTCT---------------------------------------------------------------------------CTGGATCA------------TTTT--------------TCTCT---TAGATcaggagttagc---------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I a score=177239.000000 s hg38.chr1_KI270759v1_alt 154649 51 + 425601 TCTTAAATcagagattgcaaaatgtggtccaagggtcaaatccagcctgga s panTro4.chr1 224906702 51 + 228333871 TCTTAAATcagagattgcaaaatgtggtccaagggtcaaatccagcctgga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226261864 51 - 229942017 TCTGAAATcagaggttgcaaaatatggtccaagggtcaaatccagcctgga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140154249 51 - 143122389 TCTTAAATcagaggttgcaaagtatggtccaagggtcaaatccagcctgga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16868588 51 - 229590362 TCTTAAATcagaggttgcaaaatatggtccaagggtcaaatccagcctgga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223630923 51 - 227556264 TCTTAAATcagaggttgcaaaatatggtccaagggtcaaatccagcctgga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16682498 51 - 220367699 TCTTAAATCAGAGGTTGCAAAATATGGTCCAAGGGTCAAATCCAGCCTGGA i papAnu2.chr1 I 120 C 0 s chlSab2.chr25 82480393 51 + 85787240 TCTTAAATcagaggttgcaaaatatggtccaagggtcaaatccagcctgga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14161717 51 - 49578535 TCTTAAATCAGGGGTTGTAAAATACGGTCCAAGGCTCACATCCAGCCTGGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36325517 33 + 80974532 ------------------aaaatatggcccaagggccaaatctagcccaaa i canFam3.chr7 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I a score=1223916.000000 s hg38.chr1_KI270759v1_alt 154700 481 + 425601 gtcccctgttttgg----taatgtttccttgtaacacagccacccccattt-tttacaggctgtctgtggctgcttttgtgatacgatgca--ggagttgagaagttggacagagaccatatagtttaaaatatttaccaccct---agcctttgcagaaagttcgcccacccctTAGAGTACAGAAAAAGAAAGATTTCAGAGA-TGTCAGTTTGGGAAGG-TCCTTGAAAAGTCACTTGGCAAAGAAAAGTTGTGAGAAGAAGGTTGATGTTTTGTCAAAGAAATGCA---ACGAT-GACAGATGCCAACCTGCCTTTTCTTCCAGCGGCAGAGGACCTCAGGCCGTGGTGTGCATGCCCGTGTATCGGTGTGGGTATGTGCACCTGCACACATGTGTGCTTACACGCAGCTCAA-AACGGTGCCACCCTGTCCAGAGTTATTTTGGCCATCATGGTTCAAA-----TCAACAGACTTTTCTGGAAAGCTTCTGCACACAT s panTro4.chr1 224906753 481 + 228333871 gtcccctgtttttg----taatgtttccttgtaacacagccacccccattt-tttacaggctgtctgtggctgcttttgtgatacgatgca--ggagttgagaagttggacagagaccatatagtttaaaatatttaccaccct---agcctttgcagaaagttcgcccacccctTAGAGTACAGAAAAAGAAAGATTTCAGAGA-TGTCAGTTTGGGAAGG-TCCTTGAAAAGTCACTTGGCAAAGAAAAGTTGTGAGAAGAAGGTTGATATTTTGTCAAAGAAATGCA---ACGAT-GACAGATGCCAACCTGCCTTTTCTTCCAGCGGCAGAGGACCTCAGGCCGTGGTGTGCATGCCTGTGTATCGGTGTGGGTATGTGCACCTGCACACATGTGTGCTTACACGCAGCTCAA-AACGGTGCCACCCTGTCCAGAGTTATTTTGGCCATCATGGTTCAAA-----TCAACAGACTTTTCTGGAAAGCTTCTGCACACAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226261915 479 - 229942017 gtcccctgtttttg----taatgttttcttgtaacacagccacccccattt-tttacaggctgtctgtggctgcttttgtgatacgatgca--ggagttgagaagttggacagagaccatatagtttaaaatatttaccacctt---agcctttgcagaaagttcgcccacctctTAGAGTACAGAAAAAGAAAGATTTCAGAGA-TGTCAGTTTGGGAAGG-TCCTTGAAAAGTCACTTGGCAAAGAAAAGTTGTGAGAAGAAGGTTTATATTTTGTTGAAGAAATGCA---ATGAT-GACAGATGCCAACCTGCCTTTTCTTCCAGCGGCAGAGGACCTTAGGCCGTGGTGCGCGTGCCCGTGTATTGGTGTGGGTATGTGCACCTACACAC--GTGTGCTTACACACAGCTCAA-AACGATGCCACCCTGTCCAGAGTTATTTTGGCCATCATGGTTCAAA-----TCAACAGACTTTTCTGGAAAGCTTCTGCACACAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140154300 481 - 143122389 gtcccctgtttttg----taatgtttctttgtaacacggccacccccattt-tttacaggctgtctgtggctgcttttgtgatacgatgca--ggagttgagaagttggacagagaccatatagtttaaaatatttaccaccct---agcctttgcagaaagttcacccacccctTGGAGTACAGAAAAAGAAAGATTTCAGAGA-TGTCAGTTTGGGAAGG-TCCTTGAAAAGTCACTTGGCAAAGAAAAGTTGTGAGAAGAAGGTTTATATTTTGTCAAAGAAATGCA---ACGAT-GACAGATGCCAGCCTGCCTTTTCTTCCAGCGGCAGAGGACCTCGGGCCGTGGTGTGCACGCCCGTGTATCGGTGTGGGTATGTGCACCTGCACACACATGTGCTTACACGCAGCTCAA-AAAGATGCCACCCTGTCCAGAGTTATTTTGGCCGTCATGGTTCAAA-----TTAACAGACTTTTCTGGAACGCTTCTGCACACAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16868639 476 - 229590362 gtcccctgtttttg----tagcatttcgttgtaacacagccacccccattt-tttacaggctgtc--tggctgcttttgtgaaacaatgca--ggagttgagaagttggacagacatcatctagtttaaagtatttaccaccct---ggcctttgcagaaagtttgcccacccctTAGAGTACAGAA----AGAGATTTCAGAGAGTGTCAGTTTGGGAAGG-TCCTTGAAAAATCCCGTGGCAAAGAAAAGTTGTGAGAAAAAGGTTTATGTTTTGTCAAAGAAATGCA---AAGAT-GACAGATGCCAACCTGCCTTTTCTTCCAGCGGCAGAGGACCTCGGGCCGTGGTGTGCGTGCCCGTGTATGGGTGTGGGTATGTGCACCTGCACACGCGCGTGCTTACACGCAGCTCAA-AACGATGCCACCCCGTCCAGAGTGATTTTGGCCATCATGGTTCAAA-----TCAACAGATTTTTCTGGAAAGTTTCTGCATACAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223630974 476 - 227556264 gtcccctgtttttg----tagcatttcgttgtaacacagccacccccattt-tttacaggctgtc--tggctgattttgtgaaacaatgca--ggagttgagaagttggacagacatcatctagtttaaagtatttaccaccct---ggcctttgcagaaagtttgcccacccctTAGAGTACAGAA----AAAGATTTCAGAGAGTGTCAGTTTGGGAAGG-TCCTTGAAAAATCCCGTGGCAAAGAAAAGTTGTGAGAAAAAGGTTTATGTTTTGTCAAAGAAATGCA---AAGAT-GACAGATGCCAACCTGCCTTTTCTTCCAGCGGCAGAGGACCTCGGGCCGTGGTGTGCGTGCCCGTGTATGGGTGTGGGTATGTGCACCTGCACACGCGCGTGCTTACACGCAGCTCAA-AACGATGCCACCCCGTCCAGAGTGATTTTGGCCATCATGGTTCAAA-----TCAACAGATTTTTCTGGAAAGTTTCTGCATACAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16682549 476 - 220367699 GTCCCCTGTTTTTG----TAGCATTTCATTGTAACACAGCCACCCCCATTT-TTTACAGGCTGTC--TGGCTGCTTTTGTGAAACAATGCA--GGAGTTGAGAAGTTGGACAGACATCATCTAGTTTAAAGTATTTACCACCCT---GGCCTTTGCAGAAAGTTTGCCCACCGCTTAGAGTACAGAa----aaagatttcagagaatgtcAGTTTGGGAAGG-TCCTTGAAAAATCCCGTGGCAAAGAAAAGTTGTGAGAAAAAGGTTTATGTTTtgtcaaagaaatgca---aagat-gACAGATGCCAACCTGCCTTTTCTTCCAGCGGCAGAGGACCTCGGGCCGTGGTGTGCGTGCCcgtgtgtgggtgtgggtatgTGCACCTGCACACGCGCGTGCTTACACGCAGCTCAA-AACGATGCCACCCCGTCCAGAGTGATTTTGGCCATCATGGTTCAAA-----TCAACAGATTTTTCTGGAAAGTTTCTGCACACAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82480444 482 + 85787240 gtcccctgtttttg----tagcatttccttgtgacacagccacccccattt-tttacaggctgtctgtggctgcttttgggaaacaatgca--ggaggtgagaagttggacagagatcatctagtttaaggtatttaccactct---ggcctttgcagaaagtttgcccacccctTAGAGTACAGAAAAAGAAAGATTTCAGTGAACGTCAGTTTGGGAAGG-TCCTTGAAAAATCCCGTGGCAAAGAAAAGTTGTGAGAAAAAGGTTTATGTTTTGTCAAAGAAATGCA---AAGAT-GACAGATGCCAACCTGCCTTTTCTTCCAGCAGCAGAGGACCTCGGGCCGTGGTGTGCGTGCCCGTGTATGGGTGTGGGTATGTGCACCTGCACACACGCGTGCTTACATGCAGCTCAA-AACGATGCCACCCCGTCCAGAGTGACTTTGGCCATCATGGTTCAAA-----CCAACAGATTTTTCTGGAAAGTTCCTGCACACAT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36325550 426 + 80974532 gccacctgcttttggaaataaaattttatctcaactcagctatccccatttgtttactggttgtctgtggctgattttgcactatagctcactggggttgagtagctggatggagac--tagagcttaaaa----taccaccctttggctctttgtagaaagtt-gcccactcctTAGAGTACAGAAAAA-AGAGACATCAGGGAATTCCAAGGTGGAAAGGTTCTTTAAAAAGTCATTCAGTAAAGCAAA---GTGAGAAAAAGGTGTATATTTGGTAAAGGAAATGCAGACAAGATAGACAGGTACCAGGCTGCGTG-----------------------GAGCCATGACGT--------CTGTATGG----------------------------GAGCTTAAACACAGCTCCCTAACAATGGCCTCCC--CTGGAATTATTTTGGCCATCATGGCCCAAATCCATTCAATGGACTTTCCTTGAAGGCTTCTGCC----- i canFam3.chr7 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I e calJac3.chr19 14161768 0 - 49578535 C a score=118528.000000 s hg38.chr1_KI270759v1_alt 155181 38 + 425601 GCCATGCTCAGAACAGGAGGTGCAAAGATGGGAAAGGA s panTro4.chr1 224907234 38 + 228333871 GCCATGCTCAGAACAGGAGGTGCAAAGATGGGAAAGGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226262394 38 - 229942017 GCCATGCTCAGAACAGGAGATGCAAAGATGGGAAAGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140154781 38 - 143122389 GCCATGCTCAGAACAGGAGATGCAAAGATGGGAAAGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16869115 38 - 229590362 GCCGTGCTCCGAACAGGAGATGCAAAGATGAGAAAGGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223631450 38 - 227556264 GCCGTGCTCCGAACAGGAGATGCAAAGATGAGAAAGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16683025 38 - 220367699 GCCGTGCTCCGAACAGGAGATGCAAAGATGGGAAAGGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82480926 38 + 85787240 GCCATGCTCCGAACAGGAGAAGCAAAGATGGGAAAGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14161768 34 - 49578535 GCCATACTCAGAACAGGAG----AAAGATGGGAAAGGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36325976 32 + 80974532 ------CTCATAATAGAAGATTAAAAAAAAAAAAAAAA i canFam3.chr7 C 0 I 116 e mm10.chr1 178750548 1162 + 195471971 I a score=248673.000000 s hg38.chr1_KI270759v1_alt 155219 100 + 425601 TTCTGCCTGATATGCAA--ATAGTGACCGAAA-ACAAATAGTAAGGAGTGAGGCTGATGGAGAGCTAGGGGAAACAACTCACTGTCCCTGGGAGGGCTGCAGA s panTro4.chr1 224907272 100 + 228333871 TTCTGCCTGATATGCAA--ATAGTGACCGAAA-ACAAATAGTAAGGAGTGAGGCTGATGGAGAGCTAGGGGAAATAACTCACTGTCCCTGGGAGGGCTGCAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226262432 100 - 229942017 TTCTGCCTGATATGCAA--ATAGTGACCGAAA-GCAAATAGTAAGGAGTGAGGCTGATGGAGAGCTAGGGGAAACAACTCACTGTCCCTGGGAGGGCTGCAGA i ponAbe2.chr1 C 0 I 252 s nomLeu3.chr5 140154819 100 - 143122389 TTCTGCCTGATATTCAA--ATAGTGACCGAAA-ACAAACAGTAAGGAGTGAGGCTGCCGGAGAGCGAGGGGAGACAACTCACTGTCCCTGGGAGGGCTGCAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16869153 100 - 229590362 TTCTGCTTGCTTTGCAA--ATAGTAACTGACA-ACAAATAGGAAGGAGTGAGGCTGATGGAGAGCTCGGGGAAGCAGCTCTCTGTCCCTGGGAGGGCTGCAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223631488 100 - 227556264 TTCTGCTTGCTTTGCAA--ATAGTAACTGACA-ACAAATAGGAAGGAGTGAGGCTGATGGAGAGCTCGGGGAAGCAGCTCTCTGTCCCTGGGAGGGCTGCAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16683063 100 - 220367699 TTCTGCTTGCTTTGCAA--ATAGTAACTGACA-ACAAATAGGAAGGAGTGAGGCTGATGGAGAGCTCGGGGAAGCAGCTCACTGTCCCTGGGAGGGCTGCAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82480964 100 + 85787240 TTCTGCTTGATATGCAA--ATAGTAACTGAAA-ACAAATAGGAAGGAGTGAGGCTGATAGACAGCTCGGGGAAACAGCTCACTGTCCCTGGGAGGGCTGCAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14161802 101 - 49578535 TTCTGCTT-CCATGGAATGGGGGAGACAGATATGCAAATAGTGAGGATTGAGGCTGCTGGAGATCCAGGGAGTACCACTCGCTGTGCC-GGGAGAGGGGCCGA i calJac3.chr19 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I e canFam3.chr7 36326008 116 + 80974532 I a score=550149.000000 s hg38.chr1_KI270759v1_alt 155319 260 + 425601 GGACCCAGCACAGGCGTTCTGGGGTGTAATCTTCCTTCCATTCTCGTGAGAGAAGCTGAGTGGAAACCAAGAGCCTGGCTTTTCAGTGAGGACATGAAGCCTCTGATAGTTGCCTTCCCTCTGGAGGTGAAGCAGTCCTGGAAGAAAACATATTCTTACCTCAAATTCCAAAACAACATGTGGGGACTCTGTTGAGAAGCCTGGGTGACCTAGGGCTGACGTGGTAGAATCCAGACTGATTCTGCTTCTGCTTTCTCTTA s panTro4.chr1 224907372 260 + 228333871 GGACCCAGCACAGGCATTCTGGGGTGTAATCTTCCTTTCATTCTCGTGAGAGAAGCTGAGTGGAAACCAAGAGCCTGGCTTTTCAGTGAGGACATGAAGCCTCTGATAGTTGCCTTCCCTCTGGAGGTGAAGCAGTCCGGGAAGAAAACATATTCTTACCTCAAATTCCAAAACAACATGTGGGGACTCTGTTGAGAAGCCTGGGTGACCTAGGCCTGACGTGGTAAAATCGAGACAGATTCTGCTTCTGCTTTCTCTTA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140154919 260 - 143122389 GGACCCAGCACAGGCGTTCTGGGGTGTAATCTTCCCTTCATTCTCGTGACAGAAGCTGAGTGGAAACCAACAGCCTGGCTTCTCAGTGAGGACATGAAGCCTCTGATAGTTGCCTTCCCTCTGGAGGTGAAGCCGTCCGGGAAGAAAACATATTCTTACCTCAAATTCCAAAACAACATTTGGGGACTCTGTTGAGCAGCCTGGGTGACCTAGGGCTGATGTGGGAAAATCCAGACTGATTCTGGTTCTGCTTTCTCTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16869253 259 - 229590362 GGACCCCGCACAGCCATTCTGGGGTGTGATCTTCCTTTCATTCTCGTGAGAGCAGCTGAGTGGAAACCAAGAGCCTGGCTTTTCCGTGAGGACAGGAAGCCTCTGATAGTTGCCTTCCCTCTGGAGGTGACGCAGACTGGGAAGAAAACATATTCTTACCTCAAATGCCCAAACATCATTT-GGGACTCTGTGGAGAAGCCTGGGTGACCTACGGCTGATGTGGTAAAATCCAGACTGACTCTGGTTGTGCTTTCTCTTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223631588 259 - 227556264 GGACCCCGCACAGCCATTCTGGGGTGTGATCTTCCTTTCATTCTCGTGAGAGCAGCTGAGTGGAAACCAAGAGCCTGGCTTTTCCGTGAGGACAGGAAGCCTCTGATAGTTGCCTTCCCTCTGGAGGTGACGCAGACTGGGAAGAAAACATATTCTTACCTCAAATGCCCAAACATCATTT-GGGACTCTGTGGAGAAGCCTGGGTGACCTACGGCTGATGTGGTAAAATCCAGACTGACTCTGGTTGTGCTTTCTCTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16683163 259 - 220367699 GGACCCCGCACAGCCATTCTGGGGTGTGATCTTCCTTTCATTCTCGTGAGAGCAGCTGAGTGGAAACCAAGAGCCTGGCTTTTCCGTGAGGACAGGAAGCCTCTGATAGTTGCCTTCCCTCTGGAGGTGAAGCAGACTGGGAAGAAAACATATTCTTACCTCAAATTCCCAAACATCATTT-GGGACTCTGTGGAGAAGCCTGGGTGACCTAGGGCTGATGTGGTAAAATCCAGACTGACTCTGGTTCTGCTTTCTCTTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82481064 258 + 85787240 GGACCCAGCACAGCCGTTCTGGGGTGTGATCTTCCTTTCATTCTCGTGAGAGAAGCTGAGTGGAAACCAAGAACCTGGCTTTTCAGTGAGAACAGGAAGCCTCTGCTAGTTGCCTTCCCCCTGGAGGTGAAGCAGACTGGGAAGAAAACATATTCTTACCTCAAATTCCCAAACAACATTT-GGGACTCTGTGGAGAAGCCTGGGTGACCTAGGGCTGATGTGGTAAAATCCAGACTGA-TCTGGTTCTGCTTTCTCTTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14161903 254 - 49578535 AGCGCCGGCACGGCCGCGCCGGGTTGTCA--TTCCTCTCATCCTGGTGAGAGAAGCTCAGTGGAAACCGAGAGCCCGGCCTTCCAATGAGGACATGAAGCCTCTG--AGCTGCCTTCCCTCTGGAGGGTAAGCAGACCTGGAAGAGAAAGTATGCTTACCTCACATTCCCAAACAACATTTGGGGACCCCATTGAGAAGCCTGGAT-ACTTAGGGCTGAGGTGGTGAAATCCAGACTGAGTCTGGTTCTGCTTCCTCTA- i calJac3.chr19 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I e canFam3.chr7 36326008 116 + 80974532 I e ponAbe2.chr1 226262532 252 - 229942017 I a score=676063.000000 s hg38.chr1_KI270759v1_alt 155579 257 + 425601 AAGTCAGCTCAGTTTTCCCAAtttttatcttt----ttttttttcagggtctctctctgtcaccccagcaagagtgcagggctcactgcagccttgacctcccaggcccaagcaatgcccccacctcagcctcccaggtagctaggattacgattgcaccccaccatgGTTTTCCCAATCTTATAACTAATTAGATCCGCTCATCACGTGTCCTGCAAGCATGCAGTGGCATGTCACAGTGCCCATCTGACAGCAGGGCAG s panTro4.chr1 224907632 256 + 228333871 AAGTCAGCTCAGTTTTCCCAAtttttgtc-tt----ttttttttcggggtctctctctgtcaccccagcaagagtgcagggctcactgcagccttgacctcccaggcccaagcaatgcccccacctcagcctcccaggtagctaggattacgactgcacaccaccatgGTTTTCCCAATCTTATAACCAATTAGATCCGCTCATCACGTGTCCTGCAAGCATGCAGTGGCATGTCACAGTGCCCATCTGACAGCAGGGCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226262784 236 - 229942017 AAGTCAGCTCAGTTTCCCAA---tttatcctt----ttttttttcagg---tctcgtcgtca-cccagcaagagtgca-ggctcactgcagcct--gactcccaggcccaagcaatgcccccactc-----------gtagctgggattacggttgcacaccaccatgGTTTTCCCAATCTTATAACCAATTAGATCAGCTCATCACGTGTCCCGCAAGCATGCAGTGGCGTGTCGCAGTGCCCATCTGACAGCAGGGCAG i ponAbe2.chr1 I 252 C 0 s nomLeu3.chr5 140155179 257 - 143122389 AAGTCAGCTCAGTTTTCCCAAtttttatcttt----tttttttccagggtctgtctctgtcaccccagcaagagtgcagggctcactgcagccttgacctaccaggcccaagcaatgcccccacctcagcctcccaggtagctgggattacggttgcacatcaccatgGTTTTCCCAGTCTTATAACCAATGAGATCAGCTCATCACGTGTCCCGCAAGCATGCAGTGGCATGTGGCAGTGCCCATCTGACAGCACGGCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16869512 255 - 229590362 AAGTCAGCTGAGTTTTCCCAAtttttatc-tt----ttttttttcagggtctctctctgtcaccccagcaagagtgcagggctcaccgcagccttgacctcccaggcccaagcagtgcccccgcctcagcctcccaggtagctgggattacggtagcacaccaccatgG-TTTCCCAGTCTTATAACCAACTAGATCAGCTCATCACATGTCCCGCAAGCATGCAGTGGCATGTCACAGTGCCCCTCTGACAGCAGGGCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223631847 255 - 227556264 AAGTCAGCTGAGTTTTCCCAAtttttatc-tt----ttttttttcagggtctctctctgtcaccccagcaagagtgcagggctcaccgcagccttgatctcccaggcccaagcagtgcccccgcctcagcctcccaggtagctgggattacggtagcacaccaccatgG-TTTCCCAGTCTTATAACCAACTAGATCAGCTCATCACATGTCCCGCAAGCATGCAGTGGCATGTCACAGTGCCCCTCTGACAGCAGGGCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16683422 255 - 220367699 AAGTCAGCTGAGTTTTcccaatttttatc-tt----ttttttttcagggtctctctctgtcaccccagcAAGAGTGCagggctcaccgcagccttgacctcccaggcccaagcagtgcccccgcctcagcctcccaggtagctgggattacggtaGCACACCACCATGG-TTTCCCAATCTTATAACCAACTAGATCAGCTCATCACATGTCCCGCAAGCACGCAGTGGCATGTCACAGTGCCCCTCTGACAGCAGGGCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82481322 256 + 85787240 AAGTCAGCTGAGTTTTCCCAAtttttatcttt----ttttttttcagggtctctctctgtcaccccagcaagagtgcagggctcactgcagccttgacctcccaggcccaagcagtgcccctgcctcagcctcccaggtagctgggattacggtagcacactaccatgG-TTTCCCAATCTTATAACCAACTAGATCAGCTCATCACATGTCCCACAAGCATGTAGTGGCATGTCACAGTGCCCCTCTGACAGCAGGGCGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14162157 231 - 49578535 AAGTCAGCTCAGTTTTCCCAGCCTTTGTTTTTATCGTTTTTTTCCGGGTTCTTATTctgtca-----------------------------cctggacctcccaggccccagcagtcctcccacctcagcctcctgagtagctgggattgcggttgcacaccaccatgG-TTTTACCGTCTTATGACCACTCAGCTCAGCTCAGCCTGTGTCCTGCAAGCATGCAGTGGCAGGTCGCAGTGCCCTTCTGACAGCAGGGCAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I e canFam3.chr7 36326008 116 + 80974532 I a score=415059.000000 s hg38.chr1_KI270759v1_alt 155836 154 + 425601 GGTCGTTTGTTGAGAGAAACCCACTGAGGAGGAAATAAATTAATGTCCATCCTTTGCTCCCATCACCTC-CAGCTGCACCAT-CCTTCACCAGGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCAGAGCTTCCCCGGGGATGCTGCCCTGTGGTTCTCGGGGAAGCTGAGAGCTCTATG s panTro4.chr1 224907888 154 + 228333871 GGTCGTTTGTTGAGAGAAACCCACTGAGGAGGAAATAAATTAATGTCCATCCTTTGCTCCCATCACCTC-CAGCTGCACCAT-CCTTCACCAGGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCAGAGCTTCCCCGGGGATGCTGCCCTGTGGTTCTCGGGGAAGCTGAGAGCTCTATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263020 242 - 229942017 GGTCGTTTGTTGAGAAAAACCCACTGAGGAGGAAATAAATTAATGTCCATCCTTTGCTCCCATCACCTC-CAGCTGCACCAT-CCTTCACCAGGACCCATCAGAGCTTCCCCGGGGATGCTGCCCCGTGGTTCTCGGGGAAGCTGAGAGCTCTATGCTGCAGCTCCATCATCCTT------------------------------------------------------------------------------------------CACCAGGACCCATCAGAGCTTCCCCGGGGATGCTGCCCTGTGGTTCTCGGGGAAGCTGAGAGCTCTATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140155436 242 - 143122389 GGTCGTTTGTTGAGAGAAACCCACTGAGGAGGAAATAAATTAATGTCCGTCCTTTGCTCCCATCACTTG-CAGCTGCACCAT-CCTTCACCAGGATCCATCAGAGCTTCCCCGGGGATGCTGCCCTG-----------------------------------------------TGGTTCTCAAGGAAGCTGAGAGCTCTATGCTGCAGCTCCATCAT-------------------------------------------CCTTCACCAGGACCGATCAGAGCTTCCCCGGGAATGCTGCCCTGTGGTTCTCAAGGAAGCTGAGAGCTCTATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16869767 242 - 229590362 GGTCATTTGTTGAGAGAAACCCACTGAGGAGGAAATAAATTAATGTCCCTCCTTTGCTCCCATCACCTC-CAGCTGCACCAT-CCTTCACCAGGACCCATCAGAGCTTCCCCGGGGATGCTGCCCTG------------------------------------------------------------------------------------------TAGTTCTCAGGGAAGCTGAGAGCTCTGTGCTTTGGCTGCATCATCCTTCACCAGAACCCATCAGAGCTTGCCTGGGGATGCTGCCCTGTGGTTCTCGGGGAAGCTGAGAGCTCTATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223632102 242 - 227556264 GGTCATTTGTTGAGAGAAACCCACTGAGGAGGAAATAAATTAATGTCCCTCCTTTGCTCCCATCACCTC-CAGCTGCACCAT-CCTTCACCAGGACCCATCAGAGCTTCCCCGGGGATGCTGCCCTG------------------------------------------------------------------------------------------TGGTTCTCAGGGAAGCTGAGAGCTCTGTGCTTTGGCTGCATCATCCTTCACCAGAACCCATCAGAGCTTGCCTGGGGATGCTGCCCTGTGGTTCTCGGGGAAGCTGAGAGCTCTATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16683677 242 - 220367699 GGTCATTTGTTGAGAGAAACCCACTGAGGAGGAAATAAATTAATGTCCCTCCTTTGCTCCCATCTCCTC-CAGCTGCACCAT-CCTTCACCAGGACCCATCAGAGCTTCCCCGGGGATGCTGCCCTG------------------------------------------------------------------------------------------TGGTTCTCAGGGAAGCTGAGAGCTCTGTGCTTTGGCTGCATCATCCTTCACCAGAACCCATCAGAGCTTGCCTGGGGATGCTGCCCTGTGGTTCTCGGGGAAGCTGAGAGCTCTATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82481578 153 + 85787240 GGTCATTTGTTGAGAGAAA-CCACTGAGGAAGAAATAAATTAATGTCCCTCCTTTGCTCCCATCACCTC-CAGCTGCACCAT-CCTTCACCAGGACCCATCAGAGCTTCCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGATGCTGCCCTGTGGTTCTCGGGGAAGCTGAGAGCTCTATG i chlSab2.chr25 C 0 I 250 s calJac3.chr19 14162388 145 - 49578535 TGTCATTTGTAGAGAGGAACCCACTGAGCAGGAAATAAATTAATGTCCATCCTTTGTTCCCATCACCT---------GCCATGACTCTACCAGGACTGATCAGAGGTTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGATGCTGCCCTGGGGCTCTTGGGG-AGCCAAGGGCTGCGTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36326124 129 + 80974532 GGTGATTTGTTGAGAGAAACACACTGAGGAGGAAAGAAATTAATACTCATCTTCCATT-CTGTCACCTTGGAGCTGCTCACG-CCTCTCTCAGAGTAGACCAGAGCCTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAAGCTGGGAGCTACATG i canFam3.chr7 I 116 C 0 e mm10.chr1 178750548 1162 + 195471971 I a score=352328.000000 s hg38.chr1_KI270759v1_alt 155990 141 + 425601 TTGCATCTTCCA-GGGCACCTGTGGTCTCCGAAGTGTTGGCTGCAAGAATGG----CTAAGCAGCGCACTCTCTTCAGACAAGAATAGTATTTTAATTGCCGACAGAATGCAGATAT-----CGTTTCCACTATTGCCTCTGACACTTAAT s panTro4.chr1 224908042 141 + 228333871 TTGCATCTTCCA-GGGCACCTGTGGTCTCCGAAGTGTTGGCTGCAAGAATGG----CTAAGCGGCGCACTCTCTTCAGACAAGAATAGTATTTTAATTGCAGACAGAATGCAGATAT-----CGTTTCCACTATTGCCTCTGACACTTAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263262 141 - 229942017 TTGCATCTTCCA-GGGCACCTGTGGTCTCCGAAGTGTTGGCTGCAAGAATGG----CTAAGTGGCGCACTCTCTTCAGACAAGGATAGTATTTTAATTGCAGACAGAATGCAGATAT-----CGTTTCCACTATTGCCTCTGACACTTAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140155678 141 - 143122389 TTGCATCTTCCA-GGGCAACTGTGGTCTCCGAAGTGTTGGCTGCAAGAATGG----CTAAGCGGCGCACTCTCTTCAGACAAGGGTAGTATTTTAATTGCAGACAGAATGCAGATAT-----CGTTTCCACTGTTGCCTCCGACACTTAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870009 141 - 229590362 TTGCATCTTCCA-GGGCACCTGTAGTCTCCGAAGTGTTGGCTGCAAGAATGG----CTAAGCAGTGCACTCTTTTCCGACAAAGATAGTATTTTAATTGCAGACAGAATGCAGATAT-----TGTTTCCAGTATTGCCTCCGACACTGAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223632344 141 - 227556264 TTGCATCTTCCA-GGGCACCTGTAGTCTCCGAAGTGTTGGCTGCAAGAATGG----CTAAGCAGTGCACTCTTTTCCGACAAAGATAGTATTTTAATTGCAGACAGAATGCAGATAT-----TGTTTCCAGTATTGCCTCCGACACTGAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16683919 141 - 220367699 TTGCATCTTcca-gggcacctgtagtctccgAAGTGTTGGCTGCAAGAATGG----CTAAGCAGTGCACTCTTTTCCGACAAAGATAGTATTTTAATTGTAGACAGAATGCAGATAT-----TGTTTCCAGTATTGCCTCCGACACTGAAT i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14162533 140 - 49578535 CTGCATCTTCCA-GGGCGTCTGTGGTCTGCGAAGTGTTGGCTGCAAGAATGG----CTAAGTGGTGCCCTCTCTTCAGACGAGGATAGCATTTTAATTGGAGGCAGAATGCAAATAT-----TATTTACACTA-GGCTTCTGAAACTGAAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36326253 148 + 80974532 -CTCCTCTCCCACTTCCATTTGTGATCTCAGATGTGTTGACTGTGAGGATGGTGCACCCAGTGGTA-GCTCCCTCCAGGCAAGGGCAATGTTTTAATGGT-GATGGGATGCAGGTGTTCATGTGATTTCACTATTGCCTCGGGAATTTAAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I e chlSab2.chr25 82481731 250 + 85787240 I a score=312376.000000 s hg38.chr1_KI270759v1_alt 156131 145 + 425601 TTTAggccgggcatggtgactcatgccagtaatcccagcctttagagaggctgagcctggaggactgcctgaggctagaagtttgagaccagccctggcaacatggtgagaccctgtctttaccaaaaa-----aaga------agaaggagaagg---------------------------- s panTro4.chr1 224908183 142 + 228333871 TTTAggccgggcatggtgactcatgccagtaatcccagcctttagagaggctgagcctggaggactgcctgaggctagaagtttgagaccagccctggcaacatagtgagaccctgtctttaccaaaaa--------a------agaaggagaagg---------------------------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263403 142 - 229942017 TTTAggccgggcatggtgacttatgccagtaatcccagcctttagagaggctgagcctggaggactgcctgaggctagaagtttgagaccagccctggcaacatagtgagaccctgtctttaccaaaaa--------a------agaaggagaagg---------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140155819 145 - 143122389 TTTAggctgggcatggtgactcatgccagtaatctcagcctttagagaggctgaggctggaggactgcctgaggctggaagtttgagaccagccctggcaacatagtgagaccctgtctttaacaaaaa-----aaga------agaaggagaagg---------------------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870150 150 - 229590362 TTTAGTccaggcatggtgactcatgccagcaatcccaacctttagagaggctgaggctggaggactgcctgaggctggaagttcgagaccagccctgacaacatagtgagaccctgtctctaccaaaaaagaagaata------agaaggagaagg---------------------------- i rheMac3.chr1 C 0 I 54 s macFas5.chr1 223632485 150 - 227556264 TTTAGTccaggcatggtgactcatgccagcaatcccaacctttagagaggctgaggctggaggactgcctgaggctggaagttcgagaccagccctgacaacatagtgagaccctgtctctaccaaaaaAGAagaaga------agaaggagaagg---------------------------- i macFas5.chr1 C 0 I 54 s papAnu2.chr1 16684060 156 - 220367699 TttagtccaggcatggtgactcatgccagCAATCCCAACCtttagagaggctgaggctggaggactgcctgaggctggaagttcgagaccagccctgacaacatagtgagaccctgtctctaccaaaaaagaagaagaagaaggagaaggagaagg---------------------------- i papAnu2.chr1 C 0 I 54 s calJac3.chr19 14162673 178 - 49578535 TTTAggccaggcgtggtgactcatgcctgtaatcccagcctttggagaagctgaggctggagaattgcctgaggacaggagtttgagaccaaccttggcaacatagtgacatcctatctcaagaagaagaagagaagg------ggaaagggaaggggaagggggggaggagggcaggaggaga i calJac3.chr19 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I e canFam3.chr7 36326401 0 + 80974532 C e chlSab2.chr25 82481731 250 + 85787240 I a score=193390.000000 s hg38.chr1_KI270759v1_alt 156276 69 + 425601 agaaa-------ttaaaattagccaggcatggtggtgcatgcctgtagtcccaggtactcaggaggctgaggcagg s panTro4.chr1 224908325 69 + 228333871 agaaa-------ttaaaattagccaggcatggtggtgcacgcctgtagtcccaggtactcaggaggctgaggcagg i panTro4.chr1 C 0 I 146 s ponAbe2.chr1 226263545 69 - 229942017 agaaa-------ttaaaattagccaggcatggtggtgcatgcctgtagtcccagctattcaagaggctgaggcagg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140155964 69 - 143122389 aaaaa-------ttaaaattagccaggcatggtggtgcatgcctgtagtcccagctactcgggaggctgaggcagg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870354 69 - 229590362 agaaa-------ttaaaattagccagacatggtggtacatgcctgaagtcgcagccattcaggaggctgaggcagg i rheMac3.chr1 I 54 C 0 s macFas5.chr1 223632689 69 - 227556264 agaAA-------TTaaaattagccagacatggtggtacatgcctgtagtcgcagccattcaggaggctgaggcagg i macFas5.chr1 I 54 C 0 s papAnu2.chr1 16684270 69 - 220367699 agaaa-------ttaaaattagacagacatggtggtacatgcctgtagttgcagccattcaggaggctgaggcagg i papAnu2.chr1 I 54 C 0 s chlSab2.chr25 82481981 69 + 85787240 agaAA-------TTaaaattagccagacatggtggtacatgcctgtggtcgcagccattaaggaggctgaggcagg i chlSab2.chr25 I 250 C 0 s calJac3.chr19 14162851 76 - 49578535 agaaagttgttgttaaaattagctgggcatggtgatacatagctgtagtcccagctactgaggaggctaaggccgg i calJac3.chr19 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I e canFam3.chr7 36326401 0 + 80974532 C a score=282324.000000 s hg38.chr1_KI270759v1_alt 156345 97 + 425601 aggccaggagtttgaggttacaagtgagctatgattgtaccactgcactccagccttggcaatggagagagaccctgtctcagaaaaag-aaaaaaaa s panTro4.chr1 224908540 97 + 228333871 aggccaggagtttgaggttacaagtgagctatgattgtaccactgcactccagccttggcaatggagagagaccctgtctcagaaaaag-aaaaaaaa i panTro4.chr1 I 146 C 0 s ponAbe2.chr1 226263614 97 - 229942017 aggccaggagtctgaggttacaagtgagctatgattgtaccactgcactccagccttggcaatggagagagaccctgtctcggaaaaag-aaaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156033 97 - 143122389 aggccaggagtttgaggttacaagtgagctatgattgtaccactgcactccagccttggcaatggagagagacccggtctcagaaaaag-aaaaaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870423 93 - 229590362 aggcctgaagtttgaggttacaggtgagctatgattgcaccactgcactccagccttggcaatggagagagaccctgtctcagaaaaag-gaaa---- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223632758 94 - 227556264 aggcctgaagtttgaggttacaggtgagctatgattgcaccactgcactccagccttggcaatggagagagaccctgtctcagaaaaagaaaaa---- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684339 92 - 220367699 aggcctgaagtttgaggttacaggtgagctatgattgcaccactgcactccagccttggcaatggagagagaccctgtctcagaaaaag--aaa---- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482050 93 + 85787240 aggcctgaagtttgaggttacaggtgagctatgattgcaccactgcactccagccttggcaatggagagagaccctgtctcagaaaaag-aaaa---- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14162927 97 - 49578535 aggccaggagtttgaggtttcaagtgagttatgattgcaccactgcattccagccttggcagtggagagataccctgtctcagaaaaag-aaaaaaaa i calJac3.chr19 C 0 I 293 e mm10.chr1 178750548 1162 + 195471971 I e canFam3.chr7 36326401 0 + 80974532 C a score=5798.000000 s hg38.chr1_KI270759v1_alt 156442 18 + 425601 ttaaaaaatgaaaaaaAG s panTro4.chr1 224908637 18 + 228333871 taaaaaaatttaaaaaaG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263711 11 - 229942017 agaa-------aaaaaaG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156130 15 - 143122389 gaaaaaaat---aaaaaG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870516 6 - 229590362 ------------aaaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223632852 6 - 227556264 ------------aaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684431 6 - 220367699 ------------aaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482143 6 + 85787240 ------------aaaaaa i chlSab2.chr25 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I e canFam3.chr7 36326401 0 + 80974532 C e calJac3.chr19 14163024 293 - 49578535 I a score=40786.000000 s hg38.chr1_KI270759v1_alt 156460 15 + 425601 AAGAAGAAATGTAAG s panTro4.chr1 224908655 15 + 228333871 AAGAAGAAATTTAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263722 15 - 229942017 CAGAAGAAATTTCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156145 15 - 143122389 AAGAAGAAATTTAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870522 15 - 229590362 aaGAAGAAATTTAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223632858 15 - 227556264 aagaagaaaTTTAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684437 15 - 220367699 aagaagaaatttaat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482149 15 + 85787240 aagaagaaaTTTAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14163317 15 - 49578535 aagaagaaaTGTAAT i calJac3.chr19 I 293 C 0 e mm10.chr1 178750548 1162 + 195471971 I e canFam3.chr7 36326401 0 + 80974532 C a score=395492.000000 s hg38.chr1_KI270759v1_alt 156475 127 + 425601 TTTAGGCATCTTGAAGGCAGGAGATTTTGACTGGTAATGGTGGAAGGATTTTGCAAAACTCCATGAGTTGACCTCATTCCTCAGAAATTCCATTGAGAATGGAGGGTGTTATGTGAAAATCCGAATC s panTro4.chr1 224908670 127 + 228333871 TTTAGGCATCTTGAAGGCAGGAGATTTTGACTGGTAATGGTGGAAGGATTTTGCAAAACTCCGTGAGTTCACCTCATTCCTCAGAAATTCCATTGAGAATGGAGGGTGTTATGTGAAAATCCGAACC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263737 114 - 229942017 TTTAGGCATCTTGAAGGCA-------------GGTAATGGTGGAAGGATTTTGCAAAACTCCATGAGTTGACCTCATTCCTCAGAAATTCCATTGAGAATGGAGGGTGTTATGTGAAAATCCGAATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156160 127 - 143122389 TTTAGGCATCTCGAAGGCAGGAGATTTTGCCTGGTAATGGTGGAAGGATTTTACAAAACGCCATGAGTTGACGTCATTCCTCAGAAATTCCATTGAGAATGGAGGGTGTTATGTGAAAATCTGAATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870537 126 - 229590362 TTTAGGCATCTTGAAGGCAGGAGATTTTGACTGTTAATGGTGGAAGGATTTTGCATAACTCTGTGAGTTGACCTCATTCCTCAGAAATTCCATTGAGAATGGAG-GTGTTACGTGAAAATCCAAATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223632873 126 - 227556264 TTTAGGCATCTTGAAGGCAGGAGATTTTGACTGTTAATGGTGGAAGGATTTTGCATAACTCTGTGAGTTGACCTCATTCCTCAGAAATTCCATTGAGAATGGAG-GTGTTACGTGAAAATCCAAATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684452 126 - 220367699 tttaggCATCTTGAAGGCAGGAGATTTTGACTGTTAATGGTGGAAGGATTttgcataactctgtgagttgaccTCATTCCTCAGAAATTCCATTGAGAATGGAG-GTGTTACGTGAAAATCCAAATC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482164 127 + 85787240 TTTAGGCATCTTGAAGGCAGGAGATTTTGACTGTTAATGGTGGAAGGATTTTGCATAACTCTGTGAGTTGACCTCATTCCTCAGAAATTCCATTGAGAATGGAGAGCGTTATGTGAAAATCCAAATC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14163332 121 - 49578535 TCTAGGCATCTCGAAGAAAGAAGGTTTTCACTGGTAATGGT-GAAGGAATTTGCAAAACTCCATGAGTTTCCCTCATTCCTCAGAAAGACCATTGGGAATGGAGGGAGTTATGTTAAAACCT----- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36326401 126 + 80974532 TTTAGGTATCTTGAAGATGGGAGATTTGGACCGGGAATGGTGAAAGAATTTTGCAGAACTCCATGGATCTACCTTCATCCTCAGAAATACCATTGAAAGTAGAGTGAGTTTTATCAAAACCTGATC- i canFam3.chr7 C 0 C 0 e mm10.chr1 178750548 1162 + 195471971 I a score=135864.000000 s hg38.chr1_KI270759v1_alt 156602 36 + 425601 ACAGGGGATGGCTTCGAGACATGTGGAAAGAATGCC s panTro4.chr1 224908797 36 + 228333871 ACAGGGGATGGCTTTGAGACCTGTGGAAAGAATGCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263851 34 - 229942017 ACAGGGGATGGCTTCGAGAC--GTGGAAAGAATGCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156287 36 - 143122389 ACAGGGGATGGCTTCGAGACATGTGGAAAGAATGCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870663 36 - 229590362 ACAGGGGATGGCTTCGAGACATGTGGAAAGAATGCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223632999 36 - 227556264 ACAGGGGATGGCTTCGAGACATGTGGAAAGAATGCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684578 36 - 220367699 ACAGGGGATGGCTTCGAGACATGTGGAAAGAATGCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482291 36 + 85787240 ACAGGGGATGGCTTCGAGACATGTGGAAAGAATGCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14163453 28 - 49578535 ------GATGGCTTTGAGAC--ATGGAAAGAATGCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178751710 36 + 195471971 ATATAGGATGGCTGTAAAACATATAGAAAGAATGCC i mm10.chr1 I 1162 I 266 s canFam3.chr7 36326527 36 + 80974532 AAATGGAATGGCTTCAAGACCTACTAAAAGTGTGCT i canFam3.chr7 C 0 C 0 a score=5333.000000 s hg38.chr1_KI270759v1_alt 156638 3 + 425601 GCC s panTro4.chr1 224908833 3 + 228333871 GCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263885 3 - 229942017 GTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156323 3 - 143122389 ACC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870699 3 - 229590362 GCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223633035 3 - 227556264 GCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684614 3 - 220367699 GCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482327 3 + 85787240 GCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14163481 3 - 49578535 GCC i calJac3.chr19 C 0 I 21 s canFam3.chr7 36326563 1 + 80974532 G-- i canFam3.chr7 C 0 C 0 e mm10.chr1 178751746 266 + 195471971 I a score=74993.000000 s hg38.chr1_KI270759v1_alt 156641 36 + 425601 ATTACATATGCACGCGTAGTGTTTGCCCC-AGAGGAG s panTro4.chr1 224908836 36 + 228333871 ATTACATGTGCATGTGTAGTGTTTGCCCC-AGAGGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263888 36 - 229942017 GTTACATATGCATGCGTAGTGTTTGCCCC-AGAGGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156326 37 - 143122389 GTTACATATGCATGCGTAGTGTTTGCCCCTAGAGGAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870702 37 - 229590362 GTTACATAGGCACGCTTAGTGCTTGCCCCTAGGTGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223633038 37 - 227556264 GTTACATAGGCACGCTTAGTGCTTGCCCCTAGGCGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684617 37 - 220367699 GTTACATAGGCACGCTTAGTGCTTGCCCCTAGACGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482330 37 + 85787240 ATTACATAGGCACGCTTAGTGCTTGCCCCTAGACGAG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36326564 34 + 80974532 -TTACACAGGCACACTTGCTTTTTTTCT--AGATAGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178751746 266 + 195471971 I e calJac3.chr19 14163484 21 - 49578535 I a score=48023.000000 s hg38.chr1_KI270759v1_alt 156677 16 + 425601 -GCTTTTGAAAAGTTCA s panTro4.chr1 224908872 16 + 228333871 -GCTTTTGAAAAGTTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263924 16 - 229942017 -GCTTTTGAAAAGTTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156363 16 - 143122389 -GCTTTTGAAAAGTTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870739 16 - 229590362 -GCTTTTGAAAAGTTCG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223633075 16 - 227556264 -GCTTTTGAAAAGTTCG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684654 16 - 220367699 -GCTTTTGAAAAGTTCG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482367 16 + 85787240 -GCTTTTGAAAAGTTCG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14163505 16 - 49578535 -GCGTTTGAAAAGTTCA i calJac3.chr19 I 21 C 0 s canFam3.chr7 36326598 16 + 80974532 ATTTTCTAAAAAGCAA- i canFam3.chr7 C 0 C 0 e mm10.chr1 178751746 266 + 195471971 I a score=460570.000000 s hg38.chr1_KI270759v1_alt 156693 134 + 425601 --TCT--ACAATGTGCTAAAGTCGAGTTTTGCAGTGACTTCCTAGCGCATTTAGACTGGGCATAGTTTACATTACTGAGTATTTATCAGCCAGCAAATCAAAGCCAGAAATAGGTTACT-CCTTTG-TGGAGCAGGAGAC s panTro4.chr1 224908888 134 + 228333871 --TCT--ACAATGTACTAAGGTCGAGTTTTGCAGTAACTTCCTAGCGCATATAGACTGGGCATAGTTTACATTACTGAGTATTTAGCAGCCAGCAAATCAAAGCCAGAAATGGGTTACT-CCTTTG-TGGAGCAGGAGAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226263940 134 - 229942017 --TCT--ACAACGTGCTAAAGTCGAGTTTTGCAGTAACTTCCTAGCACATATAGACTGGGCATAGTTTACATTACTGAGTATTTATCAGCCAGCAAATCAAAGCCAGAAATAGGTTGCT-CCTTTG-TGGAGTAGGAGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156379 134 - 143122389 --TCT--ACGATGTGCTAACGTCGAGTTTTGCAGTAACTTCCTAGCGCATATAGACTGGGCATAGTTTACATTACTGAGTATTTATCAGCCAGCAAATCAAAGCCAGAAATAGGTTACC-CCTTTC-TGGAGCAGGAGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870755 132 - 229590362 --TCT--ACAATGTGCTAAAGTCGAGTTTTGCAAGAACTTCCTAACCCATATAGACTGGGCATAGTTTACGTTATTGAGTATTT--CAGCCAGCAAATCAAGGCTAGGAATAGGTTACT-CCTTTG-TGGAGCAGGAGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223633091 132 - 227556264 --TCT--ACAATGTGCTAAAGTCGAGTTTTGCAAGAACTTCCTAACCCATATAGACTGGGCATAGTTTACGTTATTGAGTATTT--CAGCCAGCAAATCAAGGCCAGGAATAGGTTACT-CCTTTG-TGGAGCAGGAGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684670 132 - 220367699 --TCT--ACAATGTGCTAAAGTCGAGTTTTGCAAGAACTTCCTAACCCATATAGACTGGGCATAGTTTACGTTATTGAGTATTT--CAGCCAGCAAATCAAGGCCAGAAATAGGTTACT-CCTTTG-TGGAGCAGGAGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482383 132 + 85787240 --TCT--ACAATGTGCTAAAGTCGAGTTTTGCAAGAACTTCCTAACACACATAGACTGGGCATAGTTTACGTTATTGAGTGTTT--CAGCCAGCAAATCAAGGCCAGAAATAGGTTACT-CCTTTG-TGGAGCAGGAGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14163521 134 - 49578535 --TCTTCAAAATGTGTTCAAGGCGAGTTTTGCAGTAACTTCCTAACACAACTAGACTGGGCATATTTTATGTTATTGAGTATTT--TAGCCAGCATATCAAAGGCAGAAATAGGTTACT-GCTTAG-TGgaggaggagac i calJac3.chr19 C 0 C 0 s mm10.chr1 178752012 123 + 195471971 --TCT--ACAGCCTTCTAACACCAAG-TTTGTAGTTACTTCCTAAAATACCGAGATT-GGCATATTTTGTACAACTGAATATTT--CAAACAGCCAATCCAAACTAGAGCTAGGCCACTAACTCTG-AAGGG-------- i mm10.chr1 I 266 C 0 s canFam3.chr7 36326614 135 + 80974532 TCTCC--AGAATGTTTCAAAGTCCGGTTTTCCAATAACTTCTTAAAACATATAGACTAAACATATTCTACGTTATTGTGTATTT--CTGCCAGCAAATCAGAGCCAGAAATAGACTCCT-ACTTTGAAGGAGTAGGAGGA i canFam3.chr7 C 0 C 0 a score=483322.000000 s hg38.chr1_KI270759v1_alt 156827 198 + 425601 AGTGACTGTCCTGGGAGGAAGTGACTGTCACAGCAATGGATTCCTTTAGTAGCATCTTCACTGTGTATTCACCGGGTACCCACCGTG--TTAGCGATGACAGCCACC-CTGT---ATCAGGT-ACTCCCAAGTGTCCGTTCCCCTGttactgagcactttacaggcac--tcttgttttgtgctca-cagtaa-----------ccatt-ga-gggagatg s panTro4.chr1 224909022 198 + 228333871 AGTGACTGTCCTGGGAGGAAGTGACTGTCACAGCAGTGGATTCCTTTAGTAGCATCTTCACTGTGTATTCACCGGGTACCCACCGTG--TTAGCGATGACAACCAAC-CTGT---ATCAGGT-ACTCCCAAGTGTCCGTTCCCCTGTTACTGAGCACTTTACAGGCAC--TCTTGTTTTGTGCTCA-CAGTAA-----------CCATt-ga-gagagatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226264074 207 - 229942017 AGTGACTGTCCC-GGAGGAAGTGA-TGTCACAGCAGTGGATTCCTTTAGTAGCATCTTCACTGTGTGTTCACCGGGTACCCACCGTG--TTAGTGATGACAGCCAAC-CCGT---ATCAGGT-ACTCCCAAGTGTCCATTCCCCTGTTAAtgagcactttacaggcac--tcttgttttctgctca-cagtaaccactcatctcccact-ga-gggagatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156513 198 - 143122389 AGTGACTGTCCCGGGAGGAAGTGACTGTCACAGCAGTGGATTCCTTTAGTAGCATCTTCACTGTGTATTCACCGGGTACCCACCGTG--TTAGTGATGACAGTCAAC-CTGT---ATCAGGT-ACTCCCAAGTGTCCATTCCCCTGTTAATGAGCACTTTACAGGCAC--TCTTGTTTTGTGCTCA-CAGTAA-----------CCATt-ga-gggagatg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16870887 196 - 229590362 AGTGACTGTCCTGGGAGAAAGTGACTGTCATGGCAGTGGATTCCTTTAGTAGCATCTTCACTGTGTATTCACCAGGTACCCACCGTG--TTAGTGATGA-AGCCAGC-CTGT---CTCAGGT-GCTCCCAAGTGTCCA-TCCCCTGctcacaagcactttacaggcac--tcttgttttgtgctca-cagtaa-----------ccatg-ga-ggacgatg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223633223 196 - 227556264 AGTGACTGTCCTGGGAGAATGTGACTGTCACGGCAGTGGATTCCTTTAGTAGCATCTTCACTGTGTATTCACCAGGTACCCACCGTG--TTAGTGATGA-AGCCAGC-CTGT---CTCAGGT-GCTCCCAAGTGTCCA-TCCCCTGctcacaagcactttacaggcat--tcttgttttgtgctca-cagtaa-----------ccatg-ga-ggacgatg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684802 196 - 220367699 AGTGACTGTCCCGGGAGAAAGTGACTGTCATGGCAGTGGATTCCTTTAGTAGCATCTTCACTGTGTATTCACCAGGTACCCACCGTG--TTAGTGATGA-AGCCAGC-CTGT---CTCAGGT-GCTCCCAAGTGTCCA-TCCCCTGCTCACGAGCACTTTACAGGCAC--TCTTGTTTCGTGCTCA-CAGTAA-----------CCATG-GA-GGACGATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482515 196 + 85787240 AGTGACTGTTCCGGGAGAAAGTGACTGTCATGGCAGTGGATTCCTTTAGTAGCATCTTCACTGTGTATTCACCAGGTACCCACCGTG--TTAGTGATGA-AGCCAGC-CTGT---CTCAGGT-GCTCCCAAGTATCCA-TCCCCTGctcacaagcactttacaggcac--tcttgtttcatgctca-cagtaa-----------ccatg-ga-ggaaggtg i chlSab2.chr25 C 0 C 0 s mm10.chr1 178752135 177 + 195471971 -------------GGAGGAAGTGACCGGCTTGGCCATGATCTCCTTTACTCACTTCTTCACAG-----------GGGAAACACAGTA--TTCATGGCAAACATCAGC-CCTA---GTTGGGTAGCTTTGGGGTGTCAGTACCCTCGATAACTACC-----GAAGACACCATCTTGTTTTGCGCTTA-TAATAAATAG-------CCACACGA-GAAAGCAG i mm10.chr1 C 0 C 0 s canFam3.chr7 36326749 189 + 80974532 -------------------AGGGGTGGCCCTGGAAGTGGGCTCCTTCAGCAGCATTGGCAAAGCATATTCAGTGCATAGCCACGGTGTTTTAGTGATAAGAGCCAACACTGTTTACTGGGGG-GCTCTCAAGGGTCAGTCTCCGTTCTAATAAGCACTTGACAGATACCATCTTGTGTCGCACTCACCAGTGC-----------CCATA-GGCAGGAGCTG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14163655 0 - 49578535 C a score=4287827.000000 s hg38.chr1_KI270759v1_alt 157025 1375 + 425601 aggcacagaa-tatgaagttagttgccaa--------aagttgccagag----------ctgggatttgggctccaggtggact-gactttagaggctgtgccctCCA---TCCTTGCCCTGAACAACCTCCTGTGAAGAAATCAGTGtg-aatgaatgaatgaatgaatgaatgaatgaatgaatAAGACCTGAAGAGGCAGGCAGGCTCTGGGAGATGCAG--AGACAACTT--CTGCCC--AG---TTTGTGCTCAGGTTGTGGAGACAAGGCTTCCTACGAGATGCACACACAGAAATTTGGCAGA------ATGGGTAAGTGGATAGCACACAGTATGAGGTGGGTCCAATGACTGCTGAGATTCCCTCTGTCCTCCACCCACACTTTCTCAACGGTGTCCTTCTCAGAAGAGAACCTGCTTCTTCGACCGGCCTGGTAGGAACAGCACTCACCACCCATTTGTGTGCCAGTACAGGTAAGTAAGAGTGCTCCCGGCCGCC---------------------------------------------CTTcagcc---------------------------------------------------------------------------------gtggtgc----tc-aat----------------------------------------------------ctgctgca---------------------------------------------------------------------------------------tgcatca-----ccttagcc--------aatcctcacgtcaatcccactaggtagggattatcactgcagttatatagacaa----------------gggac--------------------ctgtggctcagggaggttaagctacttgccagatctcatggctaagaagtggcag---aaccaggattcatgcaatggtgtggccgtccttcaaatcctgtgaacctcccaTGGGAACCTCCCATGACATCTTGTGTCTCCCCTGGATATACATCCGTACCATGACGGGTTTTCT----TTTTTCCTGGTGGGAAAGGGCAGCTGGGGGTGAGAATGCTCCAGAGAGTGGCAGAA-TGGAGCTATGGACATGAAAGTATTTGGATCGTTGGGAAGTGCAGAGGTCAGCTCCGCACACACTTCCTGGGACTTTGCAGTCAATGGTTACTGAAGTTACTTAATACCCACTTGTCCCA----------------------------CGACTGGTGAGTCCCGCCTAT--------------TGCCTGC------TGTCC-----TGTGGTGCAGCTGCTGTTTGTCCATCTCCAGGGCCACCAAAGCCCGTCTGGATTGTGATTCAAGGTGTAAGAGGACATGGAA----AAAGAACTGATTTGTGTTGTATGAGTTTAGT--TTAACTTGATTACAGGAAACTGTTGGTGGGTG-AATGTAGGATTTCATTGCGTATAAACATTTCAGAGACAAGTCCCTTTCAGCTACTTTCTACTTGGGAATACT-TGT---GAGGTTTTTCACCTAAGGCTTCCCCGTAATGATTTTGT-CCTGATGATTCATTCCTTAATTAGTGGTATTTTATTGCCGCTTTGCCACAGAGCTTTCAAAACC--ATCACCTCCTCCTCCTCCTCTGGAAAACGTGCACAGACTTTGCCCACATTTAATCATGCCATCCCCACCCTTTCTAGTCTTTCTTCAAACTTCTACCAGTTCCT s panTro4.chr1 224909220 1371 + 228333871 aggcacagaa-tatgaagttagttgccaa--------aagttgccagag----------ctgggatttgggctccaggtggact-gactttagaggctgtgccctCCA---TCCTTGCCCTGAACAACCTCCTGTGAAGAAATCAGTGtg-aatgaatgaatgaatgaatgaatgaatgaat----AAGACCTGAAGAGGCAGGCAGGCTCTGGGAGACGCAG--AGACAACTT--CTGCCC--AG---TTTGTGCTCAGGTTGTGGAGACAAGGCTTCCTACGAGACGCACACACAGAAATTTGGCAGA------ATGGGTAAGTGGATAGCACACAGTATGAGGTGGGTCCAATGACTGCCGAGATTCCCTCTGTCCTCCACCCACACTTTCTCAACGGTGTCCTTCTCAGAAGAGAACCTGCTTCTTCGACCGGCCTGGTAGGAACAGCACTCACCACCCATTTGTGTGCCAGTACAGGTAAGTAAGAGTGCTCCCAGCCGCC---------------------------------------------CTTcagcc---------------------------------------------------------------------------------gtggtgc----tc-aat----------------------------------------------------ctgctgca---------------------------------------------------------------------------------------tgcatca-----ccttagcc--------aatcctcacgtcaatcccactaggtagggattatcactgcggttatatagacaa----------------ggaac--------------------ctgtggctcagggaggttaagctacttgccagatctcatggctaagaagtggcag---agccaggattcatgcaatggtgtggccgtccttcaaatcctgtgaacctcccaTGGGAACCTCCCATGACATCTTGTGTCTCCCCTGGATATACATCCGTACCATGACGGGTTTTCT----TTTTTCCTGGCGGGAAAGGGCAGCTGGGGGTGAGAATGCTCCAGAGAGTGGCAGAA-TGGAGCTATGGACATGAAAGTATTTGGATCGTTGGGAAGTGCAGAGGTCAGCTCCGCACACACTTCCTGGGACTTTGCAGTCAATGGTTACTGAAGTTACTTAATACCCACTTGTCCCA----------------------------CGACTGGTGAGTCCCGCCTAT--------------TGCCTGC------TGTCC-----TGTGGTGCAGCTGCTGTTTGTCCATCTCCAGGGCCACCAAAGCCTGTCTGGATTGTGATTCAAGGTGTAAGAGGACATGGAA----AAAGAACTGATTTGTGTTGTATGAGTTTAGT--TTAACTTGATTACAGGAAACTGTTGGTGGGTG-GATGTAGGATTTCACTGCATGTAAACATCTCAGAGACAAGTTCCTTTCAGCTACTTTCTACTTGGGAATACT-TGTTGTGAGGTTTTTCACCTAAGGCTTCCCCGTAATGATTTTGT-CCTGATGATTCATTCCTCAATTCGTGGTATTTTATTGCCGCTTTGCCACAGAGCTTTCAAAACC--ATCACCTCCTCCTCCTC---TGGAAAACGTGCACAGACTTTGCCCACATTTAATCATGCCATCCCCGCCCTTTCTAGTCTTTCTTCAAACTTCTACCAGTTCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226264281 1352 - 229942017 aggcacagaa-catgaagttagttgccaa--------aagttgccagag----------ctgggatttgggctccaggtggact-gactttagaggctgtgccctcga---tcCTTGCCCTGAACAACCTCCTGAGAATAAATCAGTGtg-aatgaatgaatgaatgaat----------------AAGACCTGAAGAGGCAGGCAGGCTCTGGGAGATGCAG--AGACAACTT--CTGCCC--AG---TTTGTGCTCAGGTTGTGGAGACAAGGCTTCCTATGAGACGCACACACAGAAATTTAGCAGA------ATGGGTAAGTGGATAGCACACAGTATGAAGTGGGTCCAATGACTGCCGAGATTCCCTCTGTCCTCCACCCACACTTTCTCAACGGTGTCCTTCTCAGAAGAGAACCTGCTTCTCCGACCGGCCTGGTAGGAACAGCACTCACCACCCATTTGT-----------GGTAAGTAAGAGTGCTCCTGGCCGCT---------------------------------------------CTTcagcc---------------------------------------------------------------------------------atggtgc----tc-aat----------------------------------------------------ctgctgca---------------------------------------------------------------------------------------tgcatca-----ccttagcc--------aatcctcacgtcaatcccactaggtagggattatcactgcagttatatagacaa----------------ggaac--------------------ctgtggctcagggaggttaagctacttgccagatcccatggctaagaagtggcag---agccaggatttgtgcagtggtgtggccgtccttcaaatcctgtgaacctcccaTGGGAAACTCCCATGACATCTTGTGTCTCCCCTGGATATACATCCGTACCATGATGGGTTTTCT----TTTTTCCTGGTGGGAAAGGGCAGCTGGGGGTGAGAATGCTCCAGAGAGTGGCAGAA-TGGAGCCATGGACGTGAAGGCATTTGGATCGTTGAGAAGTGCAGAGGTCAGCTCTTCACACACTTCCTGGGACTTTGCAGTCAATGGTTACTGGAGTTACTCGATACCCACTTGTCCCA----------------------------TGACTGGTGAGTCCTGCCTAT--------------TGCCTGC------TGTCC-----TGTGGTGCAGCTGCTGTTTGTCCATCTCTGGGGCCACCAAAGCCTGTCTGTATTGTGATTCAAGGTGTAAGAGGACGTGGAA----ACAGAACTGATTTGTGTTGTATGACTTTAGT--TTAACTTGATTACAGGAAACTGGTGGTGGGTGAAATGTAGGATTTCATTGCGTGTAAACATCTCAGAGACAAGTCCGTTTTAGCTACTTTCTACCTGGGAATACT-TGTTGTGAGGTTTTTCATCTAAGGCTTCCCCCTAATGATTTTTT-CCTGATGATTCATTCCTCAATTAGTGATATTTTCTTGCTGCTTTGCCACAGAGCTTTCAAAACC--ATCACCTCCTCCTCCTCCTCTGGAAAACGTGCACAGACTTTGCCCACATTTAATCATGCCATCCCCACCCTTTCTAGTCTTTCTTCAAACTTCTACCAGTTCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140156711 1341 - 143122389 aggcacagaa-catgaagttagttgccaa--------aagttgccagag----------c-------tgggctccaggtggact-gactttagaggctgtgccctCCA---TCCTTGCCCTGAACAACCTCCTGTGAAGAAATCAGCGtg-aatgaatgaatgaatgaat----------------gaGACCTGAAGAGGGAGGCAGGCTCTGGGAGATGCAG--AGACAACTT--CAGCCC--AC---TTTGTGCTCAGGTTGTGGGGACAAGGCTTCCTACGAGACGCACACACAGAAATTTCGCAGA------------------ATAGCCCACGGTATGAGGTGGGTCCAGTGACTGCTGAGATTCCCTCTGTCCTCCACCCATACTTTCTCAACTGTGTCCTTCTCAGAAGAGAACCTGCTTCTTCAACCGGCCTGGTAGGAACAGCACTTATCACCCATTTGTGTGCCGGTACGTGTAAGTAAGAGTGCTCCCGGCCGCC---------------------------------------------CTTcagcc---------------------------------------------------------------------------------atggtgc----tc-aat----------------------------------------------------ctgctgca---------------------------------------------------------------------------------------agcatca-----ccttagcc--------aatcctcacgtcaaccccactaggtagggattgtcactgcagttatacagacaa----------------ggaac--------------------ccgtggctcagggaggttaagctacatgccagatctcatggctaagaagtggcag---agccaggattcATGCAGTGGCGTGGCCGTCCTTTAAATCC-GCGAACCTCCCATGGGAACTTCCCATGGCATCTTGTGTCTCCCCCGGATATACATCCGTACCATGATGGGTTTTCC----TTTTTCCTGGTGGGAAAGGGCAGCTGGGGGTGAGAATGCTCCAGAGAGTGGCAGAA-TGGAGCCATGGACGTGAAGGTATTGGGATGGTTGGGAAGTGCAGAGGTCAGCTCCTCACAGACCTCCTGGGACTTTGCAGTCAATGGTTACTGGAGTTACTCGATACCCACTTGTCCCG----------------------------CGACTGGTGAGTCC-GCCTAT--------------TGCCTGC------TGTCC-----TGTGGTGCAGCTGCTGTTTGTCCATCTCCGGGGCCACCAAAGCCTGTCTGGATTGTGATTCAAGGTGTAAGAGGACGTGGAA----ACAGAACTGATTTGTGTTGTGTGAGTTTAGT--TTAACTTGATTCCAGGAAACTGGTGGTGGGTG-AATGTAGGATTTCATTGCGTGTAAACATCTCAGAGGCAAGTCCATTTCAGCTACGTTCTACTTGGGAATACT-TGTTGTGAGGTTTTTCATCTAAGGCTTCCCCGTAATGGTTTTTT-CCTGATGATTCATTCCTCAATTAGTGATATTTTATTGCCGCTTTGCCACAGAGCTTTCAAAACC--ATCACCTCCTCCTCCTCCTCTGGAAAACGTGCACAGACTTTGCCCACATTTAATCATGCCATCCCCACCCTTGCTAGTCTTTCTTCAAACTTCTACCAGTTCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16871083 1365 - 229590362 aggcacagaa-catgaagttagttgctaa--------aagttgccagag----------ctgggatttgggctccaggtggact-gacttcagaggctgtgccctcca---tccttgccccaagcaacctcCTGTGAAGGAATCAGCGtg-aatgaatgaccgaacgaatgcatacatgaatgaataaGACCTGAGGAGGCAGGCAGGCTCTGGGAGATGCGG--AGACAACTT--ATGCCC--AG---TTT-TGCTCAGGTTGTGGAGACAAGGCTTTCTACGAGATGCACACACAGAAATTCCCCAGA------ATTAATACGTGGATAGCACACAGTATGAGGTGGGTCCAGTGACTGCCGAAATTCCCTCTGTCCTCCACTCATACTTTCTCAACGGTGCCCTTCTCTGAAGAGAACCTGCTTCTTTGACCAAGCTGGTAGGAACAGCACCCACTGCCCATTTTTGTGCCAGTACGGGTAAGTACGTGTGCTCCCGGCCGCC---------------------------------------------CTTCAGCC---------------------------------------------------------------------------------ATGGTGT----CC-AAT----------------------------------------------------CTGGtgca---------------------------------------------------------------------------------------cgcatca-----acttagcc--------aatcctcacctcagtccctctaggtagggattaccactgcagctgtatagacaa----------------ggaac--------------------ccgcagctcagggaggttaagctacttgccagatctcatggctaagaagtggcag---agccaggattcatgcaatggtgtggccatccttcacatcctgt-------------gaggttcccatgacatcttgcgtctcccctgGATAAGCATCTGTACCATGATGGATTTTCT----TTTTTCCTGGTGGGAAAGGGCAGCTGGGGGTGAGAATGGTCCAGAGAGTGGCAGGA-TGGAGCCATGGTCGTGAAGGTATCTGGATCACTGGGAAGCGCAGAGGTCAGCTCCTCACAGGCGTCCTGGGATTTTGCAGTCAGTGGTTACTGGAGTTACTCGGTACCCACTTGTCCCA----------------------------CGACTGGTGAGTCCCGCCTAT--------------TGCCTGC------TGTCC-----TGTGATGCAGCTGCTGTTTGTCCATCGCTGGGGCCACCAAAGCCTGTCTGGATTGTGATTCAAGGTATAAGAGGACATGGAA----ACAGAAGTGATTTGTGTTGTATGAGTTTAGT--TTAACTTGATTACAGGAAACTGGTGGTGGATG-AATGTTGTATTTCATTGCATGTAAACATCTCAGAGACAAGTCCATTTTAGCTACTTTCTACTTGGGAATACT-TGTTGTGAGGTTTTTCATCTAAGGCTTCTCTGTAATGATTTTTTACCTGATGATTCATTCCTCAATTAGTGATGTTTTATTGCTGCTTTGCCACAGAGCTTTCAAAACC--GTCACCTCCTCCTCCTCCTCTGGAAAACATGCCCAGACTTTGCTCACATTTAATCATGCCATCCCCACCCTTTCTAGTCTTTCTTCAAACTTCCACCAGTTCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223633419 1365 - 227556264 aggcacagaa-catgaagttagttgctaa--------aagttgccagag----------ctgggatttgggctccaggtggact-gacttcagaggctgtgccctcca---tccttgccccaagcaacctcCTGTGAAGGAATCAGCGtg-aatgaatgaccgaacgaatgaatacatgaatgaGTAAGACCTGAGGAGGCAGGCAGGCTCTGGGAGATGCGG--AGACAACTT--CTGCCC--AG---TTT-TGCTCAGGTTGTGGAGACAAGGCTTTCTACGAGATGCACACACAGAAATTCCCCAGA------ATGAATACGTGGATAGCACACAGTATGAGGTGGGTCCAGTGACTGCCGAAATTCCCTCTGTCCTCCACTCATACTTTCTCAACGGTGCCCTTCTCTGAAGAGAACCTGCTTCTTTGACCAAGCTGGTAGGAACAGCACCCACTGCCCATTTTTGTGCCAGTACGGGTAAGTACGTGTGCTCCCGGCCGCC---------------------------------------------CTTCAGCC---------------------------------------------------------------------------------ATGGTGT----CC-AAT----------------------------------------------------CTGCtgca---------------------------------------------------------------------------------------cgcatca-----acttcgcc--------aatcctcacctcagtccctctaggtagggattaccactgcagctgtatagacaa----------------ggaac--------------------ccgcagctcagggaggttaagctacttgccagatctcatggctaagaagtggcag---agccaggattcatgcaatggtgtggccatccttcacatcctgt-------------gaggttcccatgacatcttgcgtctcccctgGATAAGCATCTGTACCATGATGGATTTTCT----TTTTTCCTGGTGGGAAAGGGCAGCTGGGGGTGAGAATGGTCCAGAGAGTGGCAGGA-TGGAGCCATGGTCGTGAAGGTATCTGGATCACTGGGAAGCGCAGAGGTCAGCTCCTCACAGGCGTCCTGGGATTTTGCAGTCAGTGGTTACTGGAGTTACTCGATACCCACTTGTCCCA----------------------------CGACTGGTGAGTCCCGCCTAT--------------TGCCTGC------TGTCC-----TGTGATGCAGCTGCTGTTTGTCCATCTCTGGGGCCACCAAAGCCTGTCTGGATTGTGATTCAAGGTATAAGAGGACATGGAA----ACAGAAGTGATTTGTGTTGTATGAGTTTAGT--TTAACTTGATTACAGGAAACTGGTGGTGGATG-AATGTTGTATTTCATTGCATGTAAACATCTCAGAGACAAGTCCATTTTAGCTACTTTCTACTTGGGAATACT-TGTTGTGAGGTTTTTCATCTAAGGCTTCTCTGTAATGATTTTTTACCTGATGATTCATTCCTCAATTAGTGATATTTTATTGCTGCTTTGCCACAGAGCTTTCAAAACC--GTCACCTCCTCCTCCTCCTCTGGAAAACATGCCCAGACTTTGCTCACATTTAATCATGCCATCCCCACCCTTTCTAGTCTTTCTTCAAACTTCCACCAGTTCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16684998 1365 - 220367699 AGGCACAGAA-CATGAAGTTAGTTGCTAA--------AAGTTGCCAGAG----------CTGGTATTTGGGCTCCAGGTGGACT-GACTTCAGAGGCTGTGCCCTCCA---TCCTTGCCCCAAGCAACCTCCTGTGAAGGAATCAGCGTG-AATGAATGACCGAacgaatgaatacatgaatgaataagaCCTGAGGAGGCAGGCAGGCTCTGGGAGATGCAG--AGACAACTT--CTGCCC--AG---GTT-TGCTTAGGTTGTGGAGACAAGGCTTTCTACGAGATGCACACACAGAAATTCCCCAGA------ATGAATACGTGGATAGCACACAGTATGAGGTGGGTCCAGTGACTGCCGACATTCCCTCTGTCCTCCACTCATACTTTCTCAACGGTGCCCTTCTCTGAAGAGAACCTGCTTCTTTGACCAAGCTGGTAGGAACAGCACCCACTGCCCATTTTTGTGCCAGTACGGGTAAGTACGTGTGCTCCCGGCCGCC---------------------------------------------CTTCAGCC---------------------------------------------------------------------------------ATGGTGT----CC-AAT----------------------------------------------------CTGCTGCA---------------------------------------------------------------------------------------CGCATCA-----CCTTAGCC--------AATCCTCACCTCAGTCCCTCTAGGTAGGGATTACCACTGCAGCTGTATAGACAA----------------GGAAC--------------------CCGCAGCTCAGGGAGGTTAAGCTACTTGCCAGATCTCATGGCTAAGAAGTGGCAG---AGCCGGGATTCATGCAAAGGTGTGGCCATCCTTCACATCCTGT-------------GAGGTTCCCATGACATCTTGCGTCTCCCCTGGATAAGCATCCGTATCatgatggattttct----tttttcctggtgGGAAAGGGCAGCTGGGGGTGAGAATGGTCCAGAGAGTGGCAGGA-TGGAGCCATGGTCGTGAAGGTATCTGGATCACTGGGAAGCGCAGAGGTCAGCTCCTCACAGACGTCCTGGGATTTTGCAGTCAGTGGTTACTGGAGTTACTTGATACCCACTTGTCCCA----------------------------CGACTGGTGAGTCCCGCCTAT--------------TGCCTGC------TGTCC-----TGTGATGCGGCTGCTGTTTGTCCATCTCTGGGGCCACCAAAGCCTGTCTGGATTGTGATTCAAGGTATAAGAGGACACGGAA----ACAGAAGTGATTTGTGTTGTATGAGTTTAGT--TTAACTTGATTACAGGAAACTGGTGGTGGATG-AATGTTGTATTTCATTGCATGTAAACATCTCAGAGACAAGTCCATTTTAGCTACTTTCTACTTGGGAATACT-TGTTGTGAGGTTTTTCATCTAAGGCTTCTCTGTAATGATTTTTTACCTGATGATTCATTCCTCAATTAGTGATATTTTATTGCTGCTTTGCCACAGAGCTTTCAAAACc--gtcacctcctcctcctcctctggaaAACATGCACAGACTTTGCTCACATTTAATCATGCCATCCCCACCCTTTCTAGTCTTTCTTCAAACTTCCACCAGTTCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82482711 1356 + 85787240 aggcacagaa-catgaagttagttgctaa--------aagttgccagag----------ctgggatttgggctccaggtggact-gacttcagaggctgtgccctcca---tccttgccccaagcaacctcCTGtgaaggaatcagtgtg-aatgaatgaccgaacgaatgaatacatgaatgaatAAGACCTGAGGAGGCA-GCAGGCTCTGGGAGATGCAG--AGACAACTT--CTGCCC--AG---TTT-TGCTCAGGTTGTGGAGACAAGGCTTTCTACGAGATG--CACACAGAAATTCCGCAGA------ATGAGTAAGTGGATAGCACACAGTATGAGGTGGGTCCAGTGACTGCCGAAATTCCCTCTGTCTTCCACTCATACTTTCTCAACGGTGCCCTTCTCTGAAGAGAACCTGCTTCTTTGACCAAGCTGGTAGGAACAGCACCCACTGCCCATTTGTGTGCCAGTATGGGTAAGTACGTGTGCTCCTGGCTGCC---------------------------------------------CTTCAGCC---------------------------------------------------------------------------------ATGGTGT----CC-AAT----------------------------------------------------CTGCtgca---------------------------------------------------------------------------------------cgcatca-----ccttagcc--------aatcctcacctcagtcccgctaggtcgggattaccactgcagttgtatagacaa----------------ggaac--------------------ccgtggctcagggaggttaagctccttgccagatctcgtggctaagaagtggcag---agccaggattcatgcaatggtgtggccatccttcacatcctgt-------------gaggttcccatgacatcttgcgtctcccctgGATGAGCATCCGTACCATGATGGGTTTTCT----TTTTTCCTGGTGGGAAAGGGCAGCTGGGGGTGAGAATGCTCCAGAGAGTGGCAGGA-TGGAGCCATGGTCGTGAGGGTATTTGGATCGCTGGGAAGCGCAGAGGTCAGCTCCTCACAGGCGTCCTGGGATTTTGCAGTCAGTGGTTACTGGAGTTACTCGATACCCACTTGTCCCA----------------------------TGACTGGTGAGTCCCGCCTGT--------------TGCCTGC------TGTCC-----TGTGATGCAGTTGCTGTTTGTCCATCTCTGGGGCCACCAAAGCCTGTCTGGATTGTGATTCAAGGTATAAGAAGACATGGAA----ACAGAAGTGATTTGTGTTGTATGAGTTTAGT--TTAACTTGATGACAGGAAAC---CGGTGGATG-AATGTCGTATTTCATTGCATGTAAACATCTCAGAGACAAGTCCATTTTAGCTACTTTCTACTTGGGAATAC----TTGTGGGGTTTTTCATCTAAGGCTTCTCCGTAATGATTTTTTCCCTGATGATTCATTCCTCAATTAGTGATACTTTATTGCTGCTTTGCCACAGAGTTTTCAAAACC--GTCACCTCCTCCTCCTCCTCTGGAAAACATGCACAGACTTTGCTCACATTTAATCATGCCGTCCCCACCCTTTCTAGTCTTTCTTCAAACTTCCACCAGTTCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14163655 1318 - 49578535 aggcacagaa-catgaagttagttgccaa--------aagttaccagag----------ctggggtttgggctccaggtggact-gacttcagaggctgtggtctcca---tcctcacccCAAGCAACCTCCTGTGAAGGACTCAGTGtg-aatgaatgaatgaatgaat----------------gaGACCCAAAGAGGCAGTCAGGCTCTGGGGGACACAG--AGACAACTT--CTGCCC--AG---TTTGTGCTCCGGTTATGGAGACAAGGCTTCCTACAAGATGCACACACATAAATCCAGCAGA------ATGGATACGTGGGTAGCACACAGTATGAGATGGGTCCTGTGACTGCGAAGATTCCCTCCGTCCTCCACCCATGCTTTCTCAATGGTGCCCTTCTCTGAAGAGAACCTGCTTCTTCGACCAACCTGGTAGGAACAGCACCCACTACCCATTTGTGTGCCAGTACAGG-------GAGTGCTCCCAGCCGCC---------------------------------------------C-Tcagcc---------------------------------------------------------------------------------actgtgc----tcaaat----------------------------------------------------ctgctaca---------------------------------------------------------------------------------------tgcatta-----ccttagcc--------aatcctcacgtcaaccccactagggatggattatcactgcagttttatagacaa----------------ggaaa--------------------ctgtgactcaggaaggtcaagccacttgccagatctcatggctatgaattggcag---agacgggattGATGCAATGGCGTGGCTGTCCTTAAAATCCTGT-------------ATGGTACCTGTGACATCTT--GTCTTCCCTGGATATATACCTGAACCGTGGTGGGTTTTCT----TTCTTCCTGGTGGGAAAGGACGGCTGGGGGTGAGAATGCTGCAGAGAGTGGCGGGA-TGGAGGCTGGGACACTAAGGCATCTGCGTTGTTGGGAAGGGCAGAGGCCTGCTCCTCACAGACTTCT-------------------GTGACTGGGGTTACTCGATGCCCACTTGTCCCA----------------------------AGACTGGTGAGTTCTGCCTGT--------------TGCCGGC------C-TCC-----TGTGGTGCAGCCACTGTCTGTCCATCTCTGGGGCCGCTGGAGCCTGTCTGGATTGTGAATCAAGGTGTCAGAGGAAGATGAA----ACGGAACTGATTTGTGTTCTAAGAGTTTAGT--TTAAGTTGATTAT-GGGAACTCGTGGTGGGCG-AATGTAGGATTTCACTGTGTATGAACATCTCAGAGACAAGCCCATTTTAACTACTTTCTACTT-GGAATACT-TGTTGTGAGGCTCTTCATCTAAGGCTTCCCCGTAATGATTTTTTTCCTGATGATTCATTCCTCAATTAGTGATCTTTTATTGCTGCTTTGCCACAGGGCTTTCAAAACC--ATTCCGTCTTCCTCCTCC-CTGGAAAACGTGCACAGACTTTGCCCACATTTAATCATGCCGTTCCCACCCTTTCTAGTCTTTCTTCAAAATTCTACCAGCTCCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178752312 1687 + 195471971 AGACACAGAGTTGTCAAGCCA-TGGCCTAGACCTTTTAGTTTTCCAGAGACCTGGTGCTCTGCATGTTAGTTGCCCAATCCACTAGACTT--GGGGCTTTGAACTCAAGGTGTTTTGATGTAAGTTACCTTCTACGGAGATGTCAACGGGCAATGAATGGATTAATGAGTGGGT------------GATGCTTA------TAAGAAGTCCCAGGAAGATTCAG--AGAGACTTTGCCAGCCC--AGTGATTTATGCTCAGAC--TGGAGACAAAGTGTAGTATAAG------ACACGTAAGTCCAGCAGA------ATGGGCAGATGGAAGCCATGGGAAATGAAATGGGTCACATGACTGCTAAGATGCCTTCTGTCTTCTACCTATGCCT-----AGTAGGACCCTGTAAGAAGACAGCCTACCCCTTCCAATGCCCTGGAAGGCAGAGTAGCCACTG--TGTTTGTATGCCAGCCTGAGAAAATAAGACCGATACCAGCTGCCACTGACTGGGGCTCAACCCATTGCACATCCTGTGTCAGGtcctcacatcggcccttgtagatatcacctctattttgtacaggaggaaactgagTGCCACTTGACCCTACCTGCCCTTGGGGATTGAAGGTGAGGTGGTGCAGAGTC-AATGACTCAGACTTCAGGAGCAGGTGAGAAACGCTGCAGCGAGCTCATCTGAACACTGCTGCAAGCTCCTTTAATACCCTCCACCCACACCCCATTAGCCCCAAGAAAGCATCTCTTATAAACAGCAGCTTCTGATTGGCTGGCACTGTCTGCATCAGCAATCCTTGGTCTCCCAGATGTTCCTCAATTAGGTCCTCCT--GCAGGAGATGCTTTTGTGGCTGCGTGGCCCATCGTTTACATAGTGGTGGCCCCACTGCCGCCACCACTCCTGCTACAACTGAGGAAAGTCAGGTGACTTGCAGTGTCTCAGGGCTCAGAAGTAGAAGTGAGGTCAGAATTTATGCAGTGGCAAAGCAGTTATCAAGCTT-----------------GAGGTCCCCACAGCATCAGGTATCTCC-------AGGGATCAACATTATGGTGGGTTTTCTTCAGTTTTCCTTGCCTGGAAAGGCTAAGTAGGAACCAGAATGCCCTGGAGCATGATAGAAGTGAATCTAGACACATGAAGG--------------------------------GCCTCATAGACTCCTGGGGACCATGAAGGCAGTGGTTAAAGAGGCTTCTTGAGGCAACTCTGGCACAATCTCTGTGTGTGCAGCATATGTTCATGCTCTTGGTGTGTGCAGCATATGTTCATGCTCTTGGTGTGTGCAGCATATGTCCATGCTCTTGGTACAGCTATTGCTAGCCTAACTCCAGAGCCACTTCATCTTGTACAGATTGTGAGTCAAGGTGTGAGAGGAAGTGGCAGGTTGTGAGATTGATCTGTGGCCTGTCAG-TGAGT--TTGACTCAATTCCAGGAAACTAGCAGTGGACG-AACGTGAGATTCCATTGTGTATTAACGCCCCAGAGACAAACCCATGCCTCCTATTCTCTAGTTGGGAATATTGTGTTGCCAGCTTCAAGGTCTAAGATTTTCTTTGAATGATTTTTT-TTTCATGATTCATT-----GTGAGATACATTTTATTATTGCTGTGCTGCAGAGATTGAAAAAATAAAGTATATTCTCCTCTCTCTTTGTAAAATGT----AGACTTTACTTATATCTAATCATGCCATCCCTACCCTTCCTAGCCTTTCCCCAATCCTC--CCTGTTCCT i mm10.chr1 C 0 I 3348 s canFam3.chr7 36326938 1237 + 80974532 AGGTGCAGAG-AGTGTCATCGGTTGCCAG--------AAGTCCCTTGGG----------GCTAGATTTGAACTCCAGGTGGACA-GACTTGGCAGGCTGCACTCCCAT---TCTTTACTCT--GCTGCCTCCTCTAAAGAAATCAATGTG-AATGGATTAATGAGT--------------------CATATCTGCTGAAGCAGACAGGCTCTGGGGGACATAGCAAGGCAGCTC--CTGCCCAAAG---TTT--------ACCATCAAGACAAGGCTCGATACAAAACACACCTATGCATCTGTGGAAAAAAAAAAATGGAGGAATGGGTAGGAAGCAAGAGGAGGTGGGT------------GAAAGCC----------CTGCCCCTGCTCTCCCAGTGGTGTCCTTTCCAGAAGG-----------------------------------ACCCACTG--CATCCCTATGATAGTATGGGCCAGTAAAAGCGACATCTACTCCT---------------------------------------------ATTTATTC---------------------------------------------------------------------------------TTtgtgc----tg-aac----------------------------------------------------ctgttgca---------------------------------------------------------------------------------------cacatca-----ccatttcc--------agtcctcacactcctcccacaaggtgcagattattattctcattttaggggatt----------------gatga--------------------tggaagctcagggaggttaagcaaccagcccgatctcacagctgagaaacagcag---agtcagcgttcATGCAGCGATGCGGCAGACGACCAAGGCCTG--------------AACATTCCCATGATCTCCTGTGTCTCCCCTGGAAATACACCAACACTGTGCTGGGTTTTAT-------TTCCTGGCTGGAAAGGACAGCTGGGGGCTAGAATGTTCTGGGGTGTGACAGAAGCTAAGTCACGGACCTGAAGGCACTTGGGCCATCAGGAAGCTGCTGCATCCATCCCTGGAGGGCTTCCCAGGACTGTGCAGCCTGTGATGGCAGAAATGACTCCAGATCTGCTCCTTGGG----------------------------AGACCTGGGAGTTCAGCATCC--------------TCCCCTC------ACCCC-----TGGGGGGC----------------------GGGCAGC---AGCTTGTCTGCCTGGTGAACAAAGAGAGAAAAGGAAGCGAGA----ACAGGACCATTGTGTGCACTGTGAGCAGAGTACTCCCCTCTGCTGCAGGGAGCCGGAGGCGGGC--CACACAGGACCCACCAGTGTGCAGACACCTCGGAGACGAATCCGTTTGA-CTCATTTCTACTTGGAGATATTGTGCTGTGAGGTTTGTTGCCCCAGGCTTCCCCATAATGATTTTTT---AAATGATTCATTCCTCAATTAGTGATGTTTTACTGTTGCCTTGCCACAGAGCTCCCAGAACT--GTTAGCTCCCCCTGCTCC---AGAAAGCATGCACAGCCTCTGCCCACACTCAAACACAGC-TCCACTCCCTTCCTAGACTGTCCTCAA---------------- i canFam3.chr7 C 0 C 0 a score=740396.000000 s hg38.chr1_KI270759v1_alt 158400 271 + 425601 GTGTTTCTGAGAGGAGCCCAAGTCAAACACTATGAGATAAACATCAAGAGCTTAAAATGAATGCATGTTCAAAAAA-TATGCTGGTCTCTGATTCCAAACATG-GCTACTGCTAACCCATTGAAGACCCATCAAAGACCTGACTATTCTGAATTGTTTTAATAGCAGTGAGGGGTGAGTCGATGTCTCAGGAGAGGATGGCCCAGACCTAGGTAATGTGTGTCCCGTCCCCCGACCCAGTGAGCACGTGTGTGCATCtgtgggtgtgtgc-----------gtg s panTro4.chr1 224910591 270 + 228333871 GTGTTTCTGAGAGGAGCCCAAGTCAAACACTATGAGATAAACATCAAGAGCTTAAAATGAATGCATGTTCAAAAAA-TATGCTGGTCTCTGATTCCAAACATG-GCTACTGCTAACCCATTGAAGACCCATCAAAGACCTGACTATTCTGAATTGTTTTAATAGCAGTGAGGGGTGAGTCGATGTCTCAGGAGAGGACGGCCCAGACCTAGGTAATGTGTGTCCCGTCCCCCGACCCAGTGAGCACGTG-GTGCATCtgtgggtgtgtgc-----------gtg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226265633 270 - 229942017 GTGTTTCTGAGAGGAGCCCAAGTCAAACACTGTGAGATAAACATCAAGAGCTTAAAATGAATGCATGTTCAAAAAA-TATGCTGGTCTCTGATTCCAAACATGTTCTACTGCTAACCCATTGAAGACCCATCAAAGACCTGACTATTCTGAATTGTTTTAATAGCAGTGAGGGGTGAGTCGATGTCTCAGGAGAGGATGGACCAGACCTAGGTAATGTGTGTCCTGTCCCCCAACCCAGTGAGCACgt--gtgcatgtgtgggtaagtgc-----------gtg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140158052 270 - 143122389 GTGTTTCTGAGAGGAGCCCGAGTCAAACACTAGGAGATAAACATCAAGAGCTTAAAATGAATGCATGTTCAAAAAA-TGTGCT-GTCTCCGATTCCAAACATG-GCTACTGCTAACCCATTGAAGACCCATCAAAGACCTGACTATTCTGAATTGGTTTAATAGCAGTGAGGGGTGAGTCTATGTCTCAGGAGAGGATGGGCCAGACCTAGGTAATGTGTGTCCGGTCCCCTGACCCAgtgagtacgtgtgtgcatgtgtgggtgtgtgc-----------gtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16872448 265 - 229590362 GTGTTTCTGAGAGGAGCCCAAGTCAAACACTAGGAGATAAACATCAAGAGCTTAA----AATGCATGTTCAAAAAA-TATGCTGGTCTCTAATTCCAAACATG-GCTACTGCTGACCCACTGAAGACGCATCAAAGACCTGACTCTTCTGGATTGTTTTAATAGCAGTGAGGGGTGAGTCCATGTCTCAGGAGAGGATGGGCCAGACCTAGGTAATGTGTGTCCCATCCCCCGATCCAGTGCGCAtgtgtgtgcatgtgtgggtgtgtgc-------------g i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223634784 267 - 227556264 GTGTTTCTGAGAGGAGCCCAAGTCAAACACTAGGAGATAAACATCAAGAGCTTAA----AATGCATGTTCAAAAAA-TATGCTGGTCTCTAATTCCAAACATG-GCTACTGCTGACCCACTGAAGACGCATCAAAGACCTGACTCTTCTGGATTGTTTTAATAGCAGTGAGGGGTGAGTCCATGTCTCAGGAGAGGATGGGCCAGACCTAGGTAATGTGTGTCCCATCCCCCGATCCAGTGCGCAcgtgtgtgcatgtgtgggtgtgtgc-----------atg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16686363 278 - 220367699 GTGTTTCTGAGAGGAGCCCAAGTCAAACACTAGGAGATAAACATCAAGAGCTTAA----AATGCATGTTCAAAAAA-TATGCTGGTCTCTAATTCCAAACATG-GCTACTGCTGACCCACTGAAGACACATCAAAGACCTGACCCTTCTGGATTGTTTTAATAGCAGTGAGGGGTGAGTCCTTGTCTCAGGAGAGGATGGGCCAGACCTAGGTAATGTGTGTCCCATCCCCCGATCCAGTGCGcacgtgtgtgggtgtgtgggtgtgtgcgtgtgtagggagtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82484067 266 + 85787240 GTGTTTCCGGGAGGAGCCCAAGTCAAACACTAGGAGATAAACATCAAGAGCTTAA----AATGTATGTTCGAAAAA-TATCCCGGTCTCTGATTCCAAACCTG-GCTACTGCTGACCCA-TGAAGCCACATCGAAGACCTGACTCTTCCGGATTGTTTTAATAGCAGTGAGGGGTGAGTCCATGTCTCAGGAGAGGATGGGCTAGACCTAGGTAATGTGTGTCCCATTACCCGATCCAGTGAGCAcgtgtgtgcatgtgtgggtgtgtgc-----------gtg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14164973 253 - 49578535 GTGTTTCTGAGAGGAGCCCAGGTCAAATGCTAGGAGGTCAACATCAAGAGCTTAT----GATGCAGAGTCAAAAAA-TATGCTGGTCTCTGAATGCAGACAGG---TACTGCTAACCCACTGAAGAC-CATCAAACGCCCGACTGTTCTGGG-TGTTTTAATAGCA-------GAGGGTCAATGTCT-AGGAGACGATGGGCCAGATCTAGGTAGCGTGTGTCCCGTCCCCTGACCCGGTGAGCACgtgtgtgcgtgtat--gtgtgcgc-----------atg i calJac3.chr19 C 0 C 0 s canFam3.chr7 36328175 199 + 80974532 -------TGAGAAGAGCACACATCAGTCG-GAGGAAATAAACACCAGGAGC-CAA----CATGCATATTCGAAAAGCCGGGCTGGCCTCTGTTTCTGAAGATG--CTACTGCTGGTCCATCAAAG-------------CTAGC---TCCAGATTGTTTTAAGAACAGCAAGGAgggcagcccc------------ggtggcccag---------tggtttagcaccgccttcagcccag----------------------ggtgtgatc-----------ctg i canFam3.chr7 C 0 I 215 e mm10.chr1 178753999 3348 + 195471971 I a score=43214.000000 s hg38.chr1_KI270759v1_alt 158671 29 + 425601 tgtgggtgtgtgtaggt----------gtgtgtgtgtg--g s panTro4.chr1 224910861 31 + 228333871 tgtgggtgtgtgtaggt----------gtgtgtgtgtgtgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226265903 29 - 229942017 tgtgaatatgtgtgtgg----------gtatgtgtgtc--g i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140158322 28 - 143122389 tgggggtgtgtgtgggt----------gtgtgcatgtc--- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16872713 29 - 229590362 tgtgtgtgtgtgtgcat----------gtgtgtgtggg--g i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223635051 29 - 227556264 tgtgtgtgtgtgtgcat----------gtgtgtgtggg--g i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16686641 39 - 220367699 tgcatgtgtgtgtgcatgtgtgtgtgggtgtgtgtggg--g i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82484333 28 + 85787240 tgtgtg-gggtgtgcat----------gtgtgtgtgca--t i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14165226 29 - 49578535 tgtgggtgtgtggatgt----------gtgtgtgtgcg--g i calJac3.chr19 C 0 C 0 e mm10.chr1 178753999 3348 + 195471971 I e canFam3.chr7 36328374 215 + 80974532 I a score=104971.000000 s hg38.chr1_KI270759v1_alt 158700 77 + 425601 gtgtgtgcgtatgtggggg-tgt-gtgtgggtgtgtgcatgtctgggtgtgtggg--tgtgtatgtgtgcgtgcgcgtgtg s panTro4.chr1 224910892 78 + 228333871 gcgcgcgcgtatgtggggggtgt-gtgtgggtgtgtgcatgtctgggtgtgtggg--tgtgtatgtgtgcgtgcgcgtgtg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226265932 77 - 229942017 gtgtgtgtgtatgtggggg-tgt-gtgtgggtgtgtgcatgtctgggtgtgtggg--tgtgtgtgtgcgcgtgtgcgtgtg i ponAbe2.chr1 C 0 I 1982 s nomLeu3.chr5 140158350 45 - 143122389 ----------------tag-ggt-cagtgggcgtgtgca------------------tgtgtgtgtgtgcatgcgtgtgtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16872742 80 - 229590362 gtatgtgcgtgtgtggatg-tgtggggtgggtgtgtacatgtgtggatgtgtgcgtgtgtgcatgtgtgtgtgcacgtgtg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223635080 80 - 227556264 gtatgtgcgtgtgtggatg-tgtggggtgggtgtgtacatgtgtggatgtgtgcgtgtgtgcatgtgtgtgtgcacgtgtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16686680 80 - 220367699 gtatgtgcgtgtgtggatg-tgtggggtgggtgtgtacatctgtggatgtatgcgtgtgtgcatgtgtgtgtgcacgtgtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82484361 70 + 85787240 gtctgtgtgtgtgtgggtg-tgt---gtgggtgtg----tgtgtggg---gtgggtatgtgcatgtgtgtgtgcacgtgtg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178753999 3348 + 195471971 I e canFam3.chr7 36328374 215 + 80974532 I e calJac3.chr19 14165255 0 - 49578535 C a score=15439.000000 s hg38.chr1_KI270759v1_alt 158777 11 + 425601 ggggtgtgtgc s panTro4.chr1 224910970 11 + 228333871 tgggtgtgtgc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140158395 9 - 143122389 --ggtgtgtgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16872822 11 - 229590362 ggggtgtgtgc i rheMac3.chr1 C 0 I 535 s macFas5.chr1 223635160 11 - 227556264 ggggtgtgtgc i macFas5.chr1 C 0 I 2 s papAnu2.chr1 16686760 10 - 220367699 ggtgtgtgtg- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82484431 11 + 85787240 ggggtgtgtgc i chlSab2.chr25 C 0 I 351 e mm10.chr1 178753999 3348 + 195471971 I e canFam3.chr7 36328374 215 + 80974532 I e calJac3.chr19 14165255 0 - 49578535 C e ponAbe2.chr1 226266009 1982 - 229942017 I a score=44782.000000 s hg38.chr1_KI270759v1_alt 158788 101 + 425601 ccgtgg--gtgtgtgtgggc------gtgtgcatgtgtggatgtgtggcaccatgtgtgtgggtgtgcgtgggtgtgttcctgtg----tgggtgt--gtgggtgtgtgtgcacg s panTro4.chr1 224910981 97 + 228333871 ccgtgg--gtgtgtgtgggt------gtgtg----tgtgcatgtgtggcaccgtgtgtgtgggtgtgcgtgggtgtgtccctgtg----tgggtgt--gtgggtgtgtgtgcacg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140158404 105 - 143122389 gtttggatatgtgtgtgggt------gtgtgcaagtgtggatgtgtggcaccgtgtgtgtgggtgtgtgtgggtgtgtgcctgtg----ggggtgtgggtgtgggtgtgtgcaca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223635173 109 - 227556264 gcgtgt--gtgtatgcacgcgtgtgggtgtgtgcgtgtgcgtgtgtgg----gtgtatgtgggtgtgtgcgtgtgtgtgcgcacgtgtgggggtgtgtgcgtgtgtgtgcgcgca i macFas5.chr1 I 2 C 0 s papAnu2.chr1 16686770 99 - 220367699 ---cgt--gtgtgtgcacgc------gtgtgtgtatccacgcgtgtgg----gtgtatgtgggtgtgtgggtgtgtgcgtgtgtgcct-gtggtgtgtgtgtgtgtgtgtgcaca i papAnu2.chr1 C 0 C 0 e mm10.chr1 178753999 3348 + 195471971 I e canFam3.chr7 36328374 215 + 80974532 I e calJac3.chr19 14165255 0 - 49578535 C e rheMac3.chr1 16872833 535 - 229590362 I e chlSab2.chr25 82484442 351 + 85787240 I e ponAbe2.chr1 226266009 1982 - 229942017 I a score=21653.000000 s hg38.chr1_KI270759v1_alt 158889 56 + 425601 tgtgtgggtg--------tgtgc-------------------tgtgc----gtgtgggtgtgtgggtgt-gtgCATGTTTGGCACCGT s panTro4.chr1 224911078 56 + 228333871 tgtgtgggtg--------tgtgc-------------------tgtgc----atgtgggtgtgtgggtgt-gtgcatgtgtggcaccgt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140158509 60 - 143122389 tgtgtgggtg--------tgtgc-------------------tgtgcgtgtgtgtgggtatgtgggtat-atgcatatgtggcaccgt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223635282 83 - 227556264 tgtgtgtatgcgcacgcatgtgtgtatgcacgcgtgtgggtgtgtgc----gtgtgcgtgtgtgggtgt-gtgcgtgtgtgcctgtgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16686869 77 - 220367699 cgtgtgtgtg-----gc-tgtgtgcatgtgtgtgtggggaggtgtgg----gtgtgtgcatgtgtgtgt-gtgcaggtgtgggtgtgt i papAnu2.chr1 C 0 C 0 s canFam3.chr7 36328589 57 + 80974532 GGAGTGGGTG--------GATGC-------------------CTCAG----GAGCTGGTGGGTCAGGGTAAAGTGGGTCCAGCATCCT i canFam3.chr7 I 215 C 0 e mm10.chr1 178753999 3348 + 195471971 I e calJac3.chr19 14165255 0 - 49578535 C e rheMac3.chr1 16872833 535 - 229590362 I e chlSab2.chr25 82484442 351 + 85787240 I e ponAbe2.chr1 226266009 1982 - 229942017 I a score=1179.000000 s hg38.chr1_KI270759v1_alt 158945 2 + 425601 GT s panTro4.chr1 224911134 2 + 228333871 gt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140158569 2 - 143122389 gt i nomLeu3.chr5 C 0 I 610 s macFas5.chr1 223635365 2 - 227556264 gg i macFas5.chr1 C 0 I 25 s papAnu2.chr1 16686946 2 - 220367699 gg i papAnu2.chr1 C 0 I 10 s calJac3.chr19 14165255 2 - 49578535 gc i calJac3.chr19 C 0 C 0 s canFam3.chr7 36328646 2 + 80974532 GG i canFam3.chr7 C 0 C 0 e mm10.chr1 178753999 3348 + 195471971 I e rheMac3.chr1 16872833 535 - 229590362 I e chlSab2.chr25 82484442 351 + 85787240 I e ponAbe2.chr1 226266009 1982 - 229942017 I a score=-618.000000 s hg38.chr1_KI270759v1_alt 158947 6 + 425601 GTG--------TGG s panTro4.chr1 224911136 14 + 228333871 gtgggtgtgtgtgg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140159181 6 - 143122389 gtg--------tgg i nomLeu3.chr5 I 610 C 0 s macFas5.chr1 223635392 6 - 227556264 gtg--------tgg i macFas5.chr1 I 25 C 0 s papAnu2.chr1 16686958 6 - 220367699 gtg--------tgg i papAnu2.chr1 I 10 C 0 s calJac3.chr19 14165257 6 - 49578535 atg--------cgg i calJac3.chr19 C 0 C 0 s canFam3.chr7 36328648 5 + 80974532 --------ACCTG- i canFam3.chr7 C 0 C 0 e mm10.chr1 178753999 3348 + 195471971 I e rheMac3.chr1 16872833 535 - 229590362 I e chlSab2.chr25 82484442 351 + 85787240 I e ponAbe2.chr1 226266009 1982 - 229942017 I a score=2100.000000 s hg38.chr1_KI270759v1_alt 158953 1 + 425601 G s panTro4.chr1 224911150 1 + 228333871 g i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140159187 1 - 143122389 g i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223635398 1 - 227556264 g i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16686964 1 - 220367699 g i papAnu2.chr1 C 0 I 4 s chlSab2.chr25 82484793 1 + 85787240 g i chlSab2.chr25 I 351 C 0 s calJac3.chr19 14165263 1 - 49578535 g i calJac3.chr19 C 0 C 0 e mm10.chr1 178753999 3348 + 195471971 I e canFam3.chr7 36328653 0 + 80974532 C e rheMac3.chr1 16872833 535 - 229590362 I e ponAbe2.chr1 226266009 1982 - 229942017 I a score=10355.000000 s hg38.chr1_KI270759v1_alt 158954 5 + 425601 TGTGC s panTro4.chr1 224911151 5 + 228333871 tgtgt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140159188 5 - 143122389 tgtgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16873368 5 - 229590362 tgtgc i rheMac3.chr1 I 535 C 0 s macFas5.chr1 223635399 5 - 227556264 tgtgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16686969 5 - 220367699 tgtgc i papAnu2.chr1 I 4 C 0 s chlSab2.chr25 82484794 5 + 85787240 tgtgt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14165264 5 - 49578535 tgtgt i calJac3.chr19 C 0 I 2 e mm10.chr1 178753999 3348 + 195471971 I e canFam3.chr7 36328653 0 + 80974532 C e ponAbe2.chr1 226266009 1982 - 229942017 I a score=56074.000000 s hg38.chr1_KI270759v1_alt 158959 21 + 425601 GTG--TGTGTGTGTGGGTGTGTG s panTro4.chr1 224911156 23 + 228333871 atgggtgtgcgtgtgggtgtgtg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226267991 21 - 229942017 gtg--tgtgtgggggggtgtgtg i ponAbe2.chr1 I 1982 C 0 s nomLeu3.chr5 140159193 21 - 143122389 gtg--tgtgtgtgtgggtgtgtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16873373 21 - 229590362 gtg--tgtgtatgtgggtgtgtg i rheMac3.chr1 C 0 I 4 s macFas5.chr1 223635404 21 - 227556264 gca--cgtgtgtgtgggtgtgtg i macFas5.chr1 C 0 I 264 s papAnu2.chr1 16686974 21 - 220367699 gtg--tgtgtatgtgggtgtgtg i papAnu2.chr1 C 0 I 4 s chlSab2.chr25 82484799 21 + 85787240 atg--tgggtgtgtgtgtgtgtg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14165271 21 - 49578535 gtg--tgcaggcatgcgtgtgtg i calJac3.chr19 I 2 I 4 s canFam3.chr7 36328653 21 + 80974532 GTA--TGTGCTTATGCATGTGTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178753999 3348 + 195471971 I a score=723428.000000 s hg38.chr1_KI270759v1_alt 158980 259 + 425601 CATGTGTGAGTATGTGCATGTGTGTGCAAGCGTCTGGCACACGGTGTTTTTGACTGGACTGAGGTTGTGGTACCAGAGTCCAGAAGACAGACAGTTGAAGTTGTGTCGT-GGAGGGACACTGACATGAAATCTGGCAAGTCATGTCCAAACCAGGTCACTAATCAATTGTgagcagagagcagtgagcagagggcagcagctat-gtgcagagccagagGCCGGGGTTCGAATGCACAGGAGCCACGTGGACACTGCTGCA s panTro4.chr1 224911179 256 + 228333871 catgtgtgagtatgtgcatgtgtgtgCAAGTGTCTGGCACGCGGTGTTTTTGACTGGACTGAGGTTGTGGTACCAGAGTCCAGAA---AGACAGTTGAAGTTGTGTCGT-GGAGGGACACTGACATGAAATCTGGTAAGTCATGTCCAAACCAGGTCACTAATCAATTGTGAGCAGAGAGCAGTGAGCAGAGGGCAGCAGCTAT-GTGCAGAGCCAGAGGCCGGGGTTCGAATGCACAGGAGCCACGTGGACACTGCTGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226268012 253 - 229942017 catgtgtgagtatgtgCATGCTTTTGCAAGTGTCTGGCACATGGTGTTTTTGACTGGACTGAGGTTGTGGTACCATAGTCCAGAAGATAGACAGTTGAAGTTGTGTCCT-GGAGGGACACTGACATGAAATCTGGCAAGTCATGTCCAAACCAGGTCACTAATCAGTTGGTAAC------CAGTGAGCAGAGGGCAGCAGCTAT-GTGCAGAACCAGACGCCGGGGTTTGAATGGACAGGAGCCACGCGGACACTGCTGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140159214 249 - 143122389 cgtgt----gtatgtgtatgtgtgtgCAAATGACTGGCACACGGTGTTTTTGACTGGACTGAGGTTGTGGTACCAGAGTCCAGAAGACAGACAGTTGAAATTGTGTCCC-GGAGGGACACTGATATGAAATCTGGCAAGTCATGTCCAAACCAGGTCACTAATCAATTGGGGAC------CACTGAGCAGAGGGCATCAGCTAT-GTGCAGAAGCAGAGGCCGGGGTTTGAATGGACAGCAGCCACGTGGACACTGCTGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16873398 249 - 229590362 CATGTGTGAGTATGTGCATGTGTATGTATGTGTCTGGCACACACTGTTTTTGACTGGGCTGAGGTTGTGGTACCAGAGTCCAGA----AGACAGTTGAAGTTGTGTCCT-GGAGGGGCACTGATATGAAATCTAGCAAGTCATGTCCAGACCAGGTCACTAATCAATTGGGAAC------CAGTGAGCAGAGGGCAGCAGCTAT-GTGCGGAGCCAGAGGATGGGGTTTGAATGGACAGGAGCCACGTGGACACTGCTGCA i rheMac3.chr1 I 4 C 0 s macFas5.chr1 223635689 249 - 227556264 catgtgtgagtatgtgcatgtgtatgtatgtgtctgGCACACACTGTTTTTGACTGGGCTGAGGTTGTGGTACCAGAGTCCAGA----AGACAGTTGAAGTTGTGTCCT-GGAGGGGCACTGATATGAAATCTAGCAAGTCATGTCCAGACCAGGTCACTAATCAATTGGGAAC------CAGTGAGCAGAGGGCAGCAGCTAT-GTGCGGAGCCAGAGGATGGGGTTTGAATGGACAGGAGCCACGTGGACACTGCTGCA i macFas5.chr1 I 264 C 0 s papAnu2.chr1 16686999 249 - 220367699 catgtgtgagtatgtgcatgtgtatgtatgtgtctggCACACACTGTTTTTGACTGGGCTGAGGTTGTGGTACCAGAGTCCAGA----AGACAGTTGAAGTTGTGTCCT-GGAGGGGCACTGATATGAAATCTAGCAAGTCATGTCCAGACCAGGTCACTAATCAATTGGGAAC------CAGTGAGCAGAGGGCAGCAGCTAT-GTGCGGAGCCAGAGGATGGGGTTTGAATGGACAGGAGCCACGTGGACACTGCTGCA i papAnu2.chr1 I 4 C 0 s chlSab2.chr25 82484820 249 + 85787240 catgtgtgagtatgtgcatgtgtgtgtatgtgtctgGCACACAGTGTTTTTGACTGGGCTGAGGTTGTGGTACCAGAGTCCAGA----AGACAGTTGAAGTTGTGTCCT-GGAGGGGCACTGATATGAAATCTAGCGAGTCATGTCCAGACCGGGTCACTAATCAATTGGGAAC------CAGTGAGCAGAGGGCAGTAGCTAC-GTGCGGAGCCAGAGGATGGGGTCTGAATGGACAGGAGCCACGTGGACACTGCTGCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14165296 241 - 49578535 catgtgtgagtatgtgcatg----------tgtCTTGCACACGGTGTTTTTCACTGGACTGAGGTTGGGGCACCAGTGTCCAGAAGACAGACAGTTGAAGTTTTGTCCT-GGAGGGGCACTAATGTGAAATCTAGCAAGTCATGTCCAAACCAGGTCACTGATCAA-GGGGACC------CAGTGAGCAGAGGGCAGCAGCTGTGGTGCGGAGCCAGAGGAC-GGGCTTGAGTAGACAGGAGCCATGTGGACACTGCTA-A i calJac3.chr19 I 4 C 0 s canFam3.chr7 36328674 211 + 80974532 ----------------------CATGTGGGCACCCAGCATG-GGTGCTTCTTACAGGACTGAGGCTGTGGTGCCAGCATCCAGAAGACAAGCATGCAAAGGTATGTCCTAGGCAGGGCCC--------AACCTAGCAAATCAAATCCAAAGCAGATGTCTGGCC---CGGGGGA------TGGGGCGCACAGGCGAGTAG---T-GGGGGGAGCCGCAGCTCAGAGCCACAGAGTGCAG------CATGCACGCTGGTGCA i canFam3.chr7 C 0 C 0 e mm10.chr1 178753999 3348 + 195471971 I a score=300726.000000 s hg38.chr1_KI270759v1_alt 159239 129 + 425601 GGCTGCCCGGGCACCCAGCCGCAGATTACCTGTGTTACCTCATGC---Ctttttttttttttttgagactgagtctcactctgtc----------------------------------------------------------------------------gcccaggctggagtgcaggggcgcgatctcggctcactgcaagctcc s panTro4.chr1 224911435 124 + 228333871 GGCTGCCCGGGCACCTAGCCGCAGATTACCTGTATTACCTCATGC---CTGtttttttt-----gagactgagtctcactctatc----------------------------------------------------------------------------gcccaggctggagtgcagtggcgcgaccgcggctcactgcaacctct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226268265 200 - 229942017 GGCTGCCCAGGCACCTAGCCACAGATTACCTGTATTACCTCAttc---ctttttttttt-----gagactgagtctcactctatcccccaggctggagtgcagtggcacgatcttggctcactgcaacctctgcctcctgtgttcaagcTTTTTtcctattgcccaggctggagtgcagtggcgcgaccgcggctcactgcaacctct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140159463 124 - 143122389 GGCTACCCAGGCACCTATCCGCAAATTACCTGTATTACCTCATTC---Cttttattttt-----gagactgagtctcactctgtc----------------------------------------------------------------------------gcccaggctggagtgcagtggcgcgacctcggctcactgcatcctct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16873647 128 - 229590362 AGCGGCCCAAGCACGTATCCGCAGATCACCTGCATTACCTCATCC---Ctttttttctt-ttttgagactgagtctcactctgtc----------------------------------------------------------------------------gcccaggctggagtgcagtggcatgatcttggctcactgcaacctct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223635938 128 - 227556264 AGCGGCCCAAGCACGTATCCGCAGATCACCTGCATTACCTCATCC---Ctttttttctt-ttttgagactgagtctcactctgtc----------------------------------------------------------------------------gcccaggctggagtgcagtggcatgatcttggctcactgcaacctct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16687248 128 - 220367699 AGCGGCCCAAGCACGTATCCGCAGATGGCCTGCATTACCtcatcc---ctttttttctt-ttctgagactgagtctcactctgtc----------------------------------------------------------------------------gcccaggctggagtgcagtggcatgatcttggctcactgcaacctct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82485069 131 + 85787240 GGCGGCCCAAGCACATATCCGCAGATTACCTGCATTACCTCATTCCttctttttttttt-ttttgagactgagtctcactctgtc----------------------------------------------------------------------------gctcaggctggagtgcagtggcgtgatcttggctcactgcaacctct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14165537 114 - 49578535 GGCTGCCCAGGCACCAGGCTGCAGA---------TTACCTCAttt---ttttttttttt-----gagatggagtctcatcctgtt----------------------------------------------------------------------------gcccaggctggagtgcaatggcatgatcttagct-actgcaacctcc i calJac3.chr19 C 0 C 0 e mm10.chr1 178753999 3348 + 195471971 I e canFam3.chr7 36328885 0 + 80974532 C a score=532042.000000 s hg38.chr1_KI270759v1_alt 159368 196 + 425601 gcctcccgggttcacgccattctcctgcctcagcctcccgagcagctgggactacaggcgcccgccaccacacccggctaatttttt-gtatttttagtagagacggggtttccccatgt-tggccaggatggtctccatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggatcacaggcgtg s panTro4.chr1 224911559 195 + 228333871 gcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccaccacagccggctaattttt--gtatttttagtagagacggggtttccccatgt-tggccaggatggtctcgaactcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226268465 178 - 229942017 gcctcccgggttcaagcgattctcctgcctcagcctcctgaatagctgggattacaggcgcccaccaccacagccggctaattttt--gtatttttagtagagacggggtttccccatgtatggccaggctggtctccaactcctgacctcgtgatccgcccgccttggcctcccaaagt------------------ i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140159587 195 - 143122389 gcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgcccgtcaccacagccggcttattttt--gtatttttagtaaagacggggtttcaccatct-tggtcaggctggtctccaattcctgacctcatgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16873775 195 - 229590362 gcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacccgccaccacagccggctaattttt--gtatttttagtagagacagggtttccccatgt-tggccaagctggtctccaactcctgacctcgtgatccacccgccttggccttctaaagtgctgggattacaggcctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223636066 195 - 227556264 gcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaagcacccgccaccacagccggctaattttt--gtatttttagtagagacagggtttccccatgt-tggccaagctggtctccaactcctgacctcgtgatccacccgccttggccttctaaagtgctgggattataggcctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16687376 195 - 220367699 gcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacccgccaccacagccggctaattttt--gtatttttagtagagacagggtttccccatgt-tggccaagctggtctccaactcctgacctcgtgatccacccgccttggccttctaaagtgctgggattacaggcctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82485200 195 + 85787240 gcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgatattactggcgcccgccaccacagccggctaattttt--gtatttttagtagagacggggtttccccatgt-tggccaagctggtctccaactcctgacctcgtgatccacccgccttggcctcccagagtgctgggattacaggcctg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14165651 196 - 49578535 acctcct-ggttcaagcaattctcctgcttcagccttctgagtagctgggagtacaggcatgcaccaccatacccagctaattttttcgtatctttagtagagatggggtttcaccacgt-tggccaagctggtccggaactcctgacctcatgattcacccaccttggccttacaaagtgctgggattacaggggtg i calJac3.chr19 C 0 I 262 s canFam3.chr7 36328885 97 + 80974532 GCCCCCCA-------------CCCCCACCCCATCCACC----------------------CCTAGCACCAGGGC-----------T--G--------------------------CAGAT-TGCCTGA----------------TGACCTCATCTCTC-----CCTCAGGCACCCCACGAGGTAGGGTCACAG----- i canFam3.chr7 C 0 C 0 e mm10.chr1 178753999 3348 + 195471971 I a score=219882.000000 s hg38.chr1_KI270759v1_alt 159564 78 + 425601 agccaccgcgcccggACCCATTGCCTCATTTCTTCCTCCAGCCGCCTGTGGG-TGGGGACTGTTCCCGCTGCAGTCTCC s panTro4.chr1 224911754 79 + 228333871 agccactgcgcccggACACATTGCCTCATTTCTTCCTCCAGCCGCCTGTGGGGTGGGGACTGTTCCCGCTGCAGTCTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226268643 70 - 229942017 ---------gcCTGGCCACATTGCCTCATTTTTTCCTCCAGCCGCCTGTGAGATGGGGACTGTTCCCGCTGCAGTCTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140159782 79 - 143122389 agccaccgcgcctggccACGTTGCCTCATTTCTTCCTCCAGCCGCCTGTGAGGTGGGGACTGTTCCCGTTGCAGTCTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16873970 79 - 229590362 agccaccgcgcccggccACATTACCTCATTTCTCCCTCCGGCCCGCTGTGAGGTGGGCACTGTTCCCGCTGCAGTCTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223636261 79 - 227556264 agccaccgcgcccggccGCATTACCTCATTTCTCCCTCCGGCCCGCTGTGAGGTGGGGACTGTTCCCGCTGCAGTCTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16687571 79 - 220367699 agccaccgcgcccggccacattacCTCATTTCTCCCTCCGGCCCGCTGTGAGGTGGGGACTGTTCCCGCTGCAGTCTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82485395 79 + 85787240 agccaccgcgcccggccACATTACCTCATTTCTCCCTCCAGCCCGTTGTGAGGTGGGGACTGTTCCCGCTGCAGTCTCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14166109 79 - 49578535 agccaccGCGCCCGGCCacatgacctcatttcttcctccagacccctgtgaggtggggaccgttctcgtcacagtctct i calJac3.chr19 I 262 C 0 e mm10.chr1 178753999 3348 + 195471971 I e canFam3.chr7 36328982 0 + 80974532 C a score=3235005.000000 s hg38.chr1_KI270759v1_alt 159642 1070 + 425601 TGGGTGAGAGATGAGGGAGCTGCTGGTGAGAGGCGGTTGCCCCATCACCTAAGCTCGTGACCAGGGGAGGGGGA--AA--AGCATCACTGCTCAGGCAGGAGCCCCCATGCCTCCTGCTTGGGGTTCACTTAAAGGCAC--GGCTTAGAGAGATTCTATCGACCAAAGGATGG-AAAGAGCCACGGAGAAAGTATC-------------------------------TTTCCGG-TTTTTGC---------------------------TTTCCTCTGTGTTCCGTTTCCTTCCCATTTACACAGGTGCCTTTAGCACGTAGATATTCACAGCTCTCTAGAGTCACCAACTCCTCGAA-----------------------------------TATCCCTG-gggtcctggcagaaagcggatggcgcgctgcgtctaacggagagtttttggaaaggactgtttacaaaagctgtcgcaggTGCAGGCAAGCC-----GTGGT---------------------GCGCAGTGCTCCTGCCAGCC-------------------------------------------------GCT-GGGG-------------------------------------------AGGCCTG-----------------------------AGGGC-AGGAGGGGAAG----------------------------------------------CCACGACCACCACCCCG-------AGAGGGAGGACCC-----------------------------GGGAGCATCAGCTGAGAGGCA------------------TCATGGGA--------CAGGAGCCAGG---AGGACAAGTGCCCTG---------TCctctccc-----------------atctccttctgcgctc------tccaa-gggctgagcccatcctgaag--------------------ccagaaggaa---g-----------------------------cctgtcgaggcagcttgcatccgtctgcctcctggcgcagagcagagtagagagattgaagagtggacctggacgggcaaGT---GTTCATAGAAGGCGCACAGTACgagcatctcatgaaaacag-------tgggccctgctgctcagaaaaatgcccaaacacaccaaatgtggcatatgttttcaggggatccatatac---cccttttagccagtctctggaccAGACTGTAGAGTAAGAGTCTGATTTAGATCGATGGGAAt-g--------------------tttgtttgtttgtttgtttgtttg-------tttCCCTCCTGATAAAAAATCCTGGGGTTTGTGCTCTCCTTTAAGTCTGTAACAGCTGAGTGAACAAATGGCCTGCACGCCGGCT-CCCAGGTCAGATGTCCAGCAAGCA-----GACGCTTCTTTTCTTGTTTCTCTGTCTCAAGGGAGCAAGTAAGTCCAGAAGAAGAAAGGATCTGGTGAAGGAGGCTGCAACCCGAAGT s panTro4.chr1 224911833 1077 + 228333871 TGGGTGAGAGATGAGGGAGCTGCTGGTGAGAGGCGGTTGCCCCATCACCTAAGCTCATGACCAGGGGAGGGGGAGAAA--AGCATCACTGCTCAGGCAGGAGCCCCCATGCCTCCTGCTTGGGGTTCACTTAAAGGCAC--GGCTTAGAGAGATTCTATCGACCAAAGGATGG-AAGGAGCCACGGAGAAAATATC-------------------------------TTTCCGG-TTTTTGC---------------------------TTTTCTCTGTGTTCCGTTTCCTTCCCATTTACA--GGTGCCTTTAGCACGTAAATATTCACAGCTCTTTAGAGTCACCAACTCCTTGAA-----------------------------------TATCCCTG-GGGTCCTGGCAGAAAGCGGATGGCGCGCTGCGTCTAACCAAGAGTTTTTGGAAAGGACTGTTTACAAAAGCTGTCGCAGGTGCAGGCAAGCC-----GTGGT---------------------GCGCAGTGCTCCTGCCAGCC-------------------------------------------------GCT-GGGG-------------------------------------------AGGCCTG-----------------------------AGGGC-AGGAGGGGAAG----------------------------------------------CCACGACCACCACCCCG-------AGAGGGAGGACCC-----------------------------GGGAGCATCAGCTGAGAGGCACGGCGGCTTAGTGGCC--TCATGGGA--------CAGGAGCCAGG---AGGACAAGTGCCCTG---------TCctctccc-----------------atctccttctgcgctc------tccaa-gggctgagcccatcctgaag--------------------ccagaaggaa---g-----------------------------tctgtcgaggcagcttgcatccgtctgcctcctggcgcagagcagagtagagagattgaagagtggacctggacgggcaaGT---ATTCATGGAAGGCGCTCAGTACgagcgtctcatgaaaacag-------tgggcctt-ccgctcagaaacatgcccaaacacaccaaatgtggcatatgttttcaggggatccatatac---cccttttagccagtctctggaccAGACTATAGAGTAAGAGTCTGATTTAGATCGATGGGAAG-g--------------------tttgtttgtttgtttgttt---------------CCCTCCTGATAAAAAATCCTGGGGTTTGTGCTCTCCTTTAAGTCTGTAACAGCTGAGTGAACAAATGGCCTGCACGCCGGCT-CCCAGGTCAGATGTCCAGCAAGCA-----GACGCTTCTTTTCTTGTTTCTCTATCTCAAGGGAGCAAGTAAGTCCAGAAGAAGAAAGGATCTGGTGAAGGAGACTGCAACCCGAAGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226268713 1114 - 229942017 TGGGTGAGAGATGAGGGAGCTGCTGGTGAGAGGCAGTTGCCCCATCACCTAAGCTCATGACCAGGGGAGGGGGG-AAA--AGCATCACTGCTCAGGCAGGAGCCCCCATGCCTCCTGCTTGGGGTTCACTTAAAGGCAC--GGCTTAGAGAGATTCTATCAACCAAAAGATGA-AAGGAGCCACGGAGAAAATATC-------------------------------TTTCAGGTTTTTTGC---------------------------TTTTCTCTGTGTTCGGTTTCCTTCCCATTTATACGGGTGCCTTTAGCATGTAAATATTCATAGCTCTTTAGGGTCATCAACTCCTTGAA-----------------------------------TATCCTTG-GGGTCCTGGCAGAAAGCAGATGGCACGCTCCGTCTAACGAAGAGTTTTTGAAAAGGACTGTTTACAAAAGCTGTCGCAGGTGCAGGCAAGCC-----GTGGT---------------------GCACAGTGCTCCTGCCAGCC-------------------------------------------------ACT-GGGG-------------------------------------------AGGCCTG-----------------------------AGGGC-AGGAGGGGAAG----------------------------------------------CCATGACCACAACCCCG-------AGAGGGAGGACCC-----------------------------GGGAGCATCAGCTGAGAGGCATGGCAGCTTAGTGGCC--TCATGGGA--------CAGGAGCCAGG---AGGACAAGTGCCTTG---------TCctctccc-----------------atctccttctgcgctc------tccaa-gggctgagcccatcctgaag--------------------ccagaaggaa---g-----------------------------tctgtcgaggcagcttgcatccgtctgcctcctggtgcagagcagagtagagagattgaggagtggacctagacgggcaaGT---ATTCACAGAAGGCGCCCAGTACgagcatctcatgaaaacag-------tgggcctg-ctgctcagaaaaatgcccaaacacaccaaatgtggcatatgttttcaggggatccatatac---cccttttagccagtctctggaccAGACTATAGAGTAAGAGTCTGATTTAGATCGATGGGAAT-GgtttttttgttttgttttgttttgtttttgtttttgtttttttgtctttttttTCCCTCCTGATAAAAAATCCTGGGGTTTGTGCTCTCCTTTAAGTCTGTAACAGCTGAGTGAACAAATGGCCTGCACGCCGGCT-CCCAGGTCAGATGTCCAGCAAGCA-----GACGCTTCTTTTCTTGTTTCTCTATCTCAAGGGAACAAGTAAGTCCAGAAGAAGAAAGGATCTGGTGAGGGAGACTGCAACCCGAAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140159861 1071 - 143122389 TGGGTGAGAGATGAGGGAACTGCTGGT--GAGGTGGCTGCCCCATCAGCTAAGCTCATGACCAGGGGAAGCGGG-GAA--AGCATCACTGCTCAGGCAGAAGCCCCCATGCCTCCTGCTTGGGGTTCACTTAAAGTCTC--AGCTTAGAGAGA-TCTGTCAACCAAAGATTGGAAAGGAGCCACGGAGAAAACATC-------------------------------TTTTAGG-TTTTTGC---------------------------TTTTCTCTGTGTTCAGTTTCCTTCCCATTTATACAGGTGCCTTTAGCATGTAAATATTCACAGCTCTTTAGGGTCGTCAATTCCTTGAA-----------------------------------CATCCTTG-gggtcctggcagaaagcagatggcacactccgtctaacgaagagtttttgaaaaggactgtttacagaaactgtcgcaggTGCAGGCAAGCC-----GTGGT---------------------GCGCAGTGCTCCTGCCAGCC-------------------------------------------------ACT-GGGG-------------------------------------------AGGCCTG-----------------------------AGGGC-AGGAGGGGAAG----------------------------------------------CCGCGACCACAACTCCG-------AGAGGGAGGACCC-----------------------------AGGAGCATCAGCTGAGAGGCACGGCGGCTTAGTGCCC--TCATGGGA--------CAGGAGCCAGG---AG---AAGTGCcccg---------tcctctccc-----------------atctccttctgcgctc------tccaa-gggctgagcccatcctgaag--------------------ccagaaggaa---g-----------------------------tctgtcgaggcagcttgcatccgtctgcctcctggcccagagcaaagtagagagattgaggagtggacctagacgggcaaGT---ATTCATAGAAGGCGCCCAGAACgagcatctcatgaaaacag-------tgggccctgctgctcagaaaaatggccaaacacgccacatgtggcatatgttttcaggggatccatatac---cccttttagccagtctctggaccAGTCTGTAGAGTAAGAGTCTGATTTAGATCAATGGGAAT-G--------------------TTTGTTTGTTTGT------------------TTTTCCTCCTGATAAAAAATCTTGGGGTTTGTGCTCTCCTTTAAGTCTGTAACAGCTGAGTGAACAAATGGCCTGCACGCCGGCT-CCCAGGTCAGATGTCCAGCAAGCA-----GATGCTTCTTTTCTTGTTTCTCTATCTCAAGGGAACAAGTAAGTCCAGAAGAAGAAAGGATCTGGTGAAGGAGACTGCAACCCGAAGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16874049 1059 - 229590362 TGGGTGAGAGATGAGGGGGCTGCTGGTGAGAGGCGGTGGCCCCATCACCTGAGCTCGTGACCAGGGGAGAGGGG-AAA--AGCATCCCTGCTCAGGCAGGAGCCCCTGTGCCTCATGCTTGGGGTTCACTTAAAGGCAC--GGCTTAGAGAGATGCTATCAACCAAAGGATGGAAAGGAGCCATAGAGAAAATATC-------------------------------TTTTAGGTTTTTTGC---------------------------TTTTCTCTATGTTCAGTTTCCTTCCCATTTATACAGGTGCCTTTAGCATGTAAATATTCATAGCTCTTTAGGGTCATCCACTCCTTGAA-----------------------------------TATCCTTG-GAGTCCTGGCAGAAAGCAGATGGCGCCCTCCGTCTAACGAAGAGGTTTTGAAAAGGACTGTGTACA-AAGCGGTCGCAGGTGCCGGCAAGCC-----GTGGT---------------------GCGCAGTGCTCCTGCCAGCC-------------------------------------------------ACT-GGGG-------------------------------------------AGGCCTG-----------------------------AGGGT-AGGAGGGGAAG----------------------------------------------CCAGGACCACAGCCCCG-------AGAGGGAGGACCT-----------------------------GGAAGCATCAGCTGAGAGGCACGAAGGCTTAGTGGCC--TCATGGGA--------CAGGAGCCAGG---AGGACAAGCGCCCTG---------TCctctccc-----------------atctcctcctgcgctc------tccaa-gggctgagcccatcctgaag--------------------ccagaaggaa---g-----------------------------tctg----------ttgcatccgtctgcctcctggcccagagcagagtagagagattgaggagcggacctagatgggcaagt---attcatagaaggcgcccagcaccagcatctcatgaaaacag-------tggaccta-cttctcagaaaaatgcccaaacacgccaaatgtggcgtatgttttcaggggatccatatac---ccctcttagccagtctctggaGCAGACTATAGAGTAAGAGTCTGATTTAGATCGATGGGAA---------------------------TTTTTTTTT------------------TTTCTCTCCTGAT-AAATATCTTGGGGTTCGTGCTCTCCTTTAAGTCTGCAACAGCTGAGCGAACAAATGGCCTGCACGCGGGCT-CCCAGGTCAGACGTCCAGCAAGCA-----GATGCTTCTTTTCTCGTTTCTGTATCTCAAGGGAACAAGTAAGTCCAGAAGAAGAAAGGATCTGGTGAAGGAGACTGCAACCCAAAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223636340 1075 - 227556264 TGGGTGAGAGATGAGGGAGCTGCTGGTGAGAGGCGGTGGCCCCATCACCTAAGCTCGTGACCAGGAGAGAGGGG-AAA--AGCATCCCTGCTCAGGCAGGAGCCCCTGTGCCTCATGCTTGGGGTTCACTTAAAGGCAC--GGCTTAGAGAGATGCTATCAACCAAAGGATGGAAAGGAGCCATAGAGAAAATATC-------------------------------TTTTAGGTTTTTTGC---------------------------TTTTCTCTATGTTCAGTTTCCTTCCCATTTATACAGGTGCCTTTAGCATGTAAATATTCATAGCTCTTTAGGGTCATCCACTCCTTGAA-----------------------------------TATCCTTG-GAGTCCTGGCAGAAAGCAGATGGCGCCCTCCGTCTAACGAAGAGGTTTTGAAAAGGACTGTGTACA-AAGCGGTCGCAGGTGCCGGCAAGCC-----GTGGT---------------------GCACAGTGCTCCTGCCAGCC-------------------------------------------------ACT-GGGG-------------------------------------------AGGCCTG-----------------------------AGGGT-AGGAGGGGAAG----------------------------------------------CCAGGACCACAGCCCCG-------AGAGGGAGGACCT-----------------------------GGAAGCATCAGCTGAGAGGCACGAAGGCTTAgtggcc--tcatggga--------caggagccagg---aggacaagcgccctg---------tcctctccc-----------------atctcctcctgcgctc------tccaa-gggctgagcccatcctgaag--------------------ccagaaggaa---g-----------------------------tctgtggaggcagcttgcatccgtctgcctcctggcccagagcagagtagagagattgaggagcggacctagatgggcaagt---attcatagaaggcgcccagcaccagcatctcatgaaaacag-------tggaccta-cttctcagaaaaatgcccaaacatgccaaatgtggcgtatgttttcaggggatccatatac---ccctcttagccagtctctggaccAGACTATAGAGTAAGAGTCTGATTTAGATCGATGGGAAT-G--------------------TTTTTTTTTTTTT------------------TTTCTCTCCTGAT-AAATATCTTGGTCTTCGTGCTCTCCTTTAAGTCTGCAACAGCTGAGCGAACAAATGGCCTGCACGCGGGCT-CCCAGGTCAGACGTCCAGCAAGCA-----GATGCTTCTTTTCTCGTTTCTGTATCTCAAGGGAACAAGTAAGTCCAGAAGAAGAAAGGATCTGGTGAAGGAGACTGCAACCCAAAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16687650 1068 - 220367699 TGGGTGAGAGATGAGGGAGCTGC--GTGAGAGGCGGTGGCCCCATCACCTAAGCTCATGACCAGGGGAGAGGGG-AAA--AGCATCCCTGCTCAGGCAGGAGCCCCTGTGCCTCATGCTTGGGGTTCACTTAAAGGCAC--GGCTTAGAGAGATGCTATCAACCAAAGGATGGAAAGGAGCCACAGAGAAAATATC-------------------------------TTTTaggttttttgc---------------------------ttttctctatgTTCAGTTTCCTTCCCATTTATACAGGTGCCTTTAGCATGTAAATATTCATAGCTCTTTAGGGTCATCCACTCCTTGAA-----------------------------------TATCCTTG-GAGTCCTGGCAGAAAGCAGATGGCGCGCTCCGTCTAACGAAGAGGTTTTGAAAAGGACTGTGTACA-AAGCGGTCGCAGGTGCCGGCAAGCC-----GTGGT---------------------GCGCAGTGCTCCtgccagcc-------------------------------------------------act-gggg-------------------------------------------aggcctG-----------------------------AGGGT-AGGAGGGGAAG----------------------------------------------CCAGGACCACAGCCCCG-------AGAGGGAGGACCT-----------------------------GGAAGCATCAGCTGAGAGGCACGAAGGCTTAGTGGCC--TCATGGGA--------CAGGAGCCAGG---AGGACGAGCGCCCTG---------TCCTCTCCC-----------------ATCTACTCCTGCGCTC------TCCAA-GGGCTGAGCCCATCCTGAAG--------------------CCAGAAGGAA---G-----------------------------TCTGTGGAGGCAGCTTGCATTCGTCTGCCTCCTGGCCCAGAGCAGAGTAGAGAGATTGAGGAGCGGACCTAGATGGGCAAGT---ATTCATAGAAGGCGCCCAGCACCAGCATCTCATGAAAACAG-------TGGACCTA-CTTCTCAGAAAAATGCCCAAACACGCCAAATGTGGCGTATGTTTTCAGGGGATCCATATAC---CCCTCTTAGCCAGTCTCTGGACCAGACTATAGAGTAAGAGTCTGATTTAGATCGAtgggaa--------------------------tgtttttttt------------------tttttctcctgat-aaATATCTTGGGGTTCGTGCTCTCCTTTAAGTCTGCAACAGCTGAGCGAACAAATGGCCTGCACGCGGGCT-CCCAGGTCAGACGTCCAGCAAGCA-----GAtgcttcttttctcatttctgtatCTCAAGGGAACAAGTAAgttcagaagaagaaaggatcTGGTGAAGGAGACTGCAACCCAAAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82485474 1073 + 85787240 TGGGTGAGAGATGAGGGAGCTGCTGATGAGAGGCGGTGGCCCCATCACCTAAGCTCATGACCAGGGGAGAGGGG-AAA--AGCATCCCTGCTCAGGCAGGAGGCACCGTGCCTCATGCTTGGGGATCACTTAAAGGCAG--GGCTTAGAGAGATGCTATCAACCAAAGGATGGAAAGGAGCCACAGAGAAAATATC-------------------------------TTTTAGGTTTTTTGC---------------------------TTTTCTCTATGTTCAGTTTCCTTCCCATTTATACAGGTGCCTTTAGCGTGTAAATATTCATAGCTCTTTAGGGTCATCCACTCCTTGAA-----------------------------------TATCCTTG-gagtcctggcagaaagcagatggcacgctccgtctaacgaagaggttttgaaaaggactattgaca-aagCGGTCGCAGGTGCCTGCAAGCC-----GTGGT---------------------GCACAGTGCTCCTGCCAGCC-------------------------------------------------ACT-GGGG-------------------------------------------AGGCCTG-----------------------------AGGGT-AGGAGGGGAAG----------------------------------------------CCAGGACCACAGCCCCG-------AGAGGGAGGACCT-----------------------------GGAAGCATCAGCTGAGAGGCACGGCGGCTTAgtggcc--tcatggga--------caggagccagg---aggacaagtgccctg---------tcgtctccc-----------------atctccttctgcgctc------tccaa-gggctgagcctatcctgaag--------------------ccagaaggaa---g-----------------------------tctgtccaggcagcttgcatccgtctgccttttggcccagagaagagtagagagattgaggagtggacctagatgggcaaGT---ATTCATAGAAGGCGCCCAGCACCagcatctcatgaaaacag-------tggacctg-cttctcagaaaaatgcccaaacacgccaaatgtggcgtatgttttcaggggatccatatac---ccctcttagccagtctgtggaccAGACTATAGAGTAAGAGTCTGATTTAGATCAATGGGAA-----------------------TGTTTTTTTTTTT------------------TTTTTCTCCTGAT-AAATATCTTGGAGTTCGTGCTCTCCTTTAAGTCTGCAACAGCTGAGTGAACAAATGGCCTGCACGCGGGCT-CCCAGGTCAGATGTCCAGCAAGCA-----GATGCTTCTTGTCTCGTTTCTGTATCTCAAGGGAACAAGTAAGTTCAGAAGAAGAAAGGATCTGGTGAAGGAGACTACAACCCAAAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14166188 1035 - 49578535 caggtgagagatgaggaagctgCTGGTGAGACGCTGTTGGCCCATCACCTAAGCTCATGAGCAGGGGAGAGGGA-AAAGCAGCATTCACGGACAGGGAGGAGTCCCCATGCCTCATGCTTGGGGTTCAC-TAAAGGCATG-GGCTTAGAGAGAGTCTATCAACCAGAGGATGGAAAGGA-------AGAGAAGATA-------------------------------TGTTAGGTTTTTTGC---------------------------TTTTCTCTCTCTTCAGTTTCCTTCCCATGTATACTGGTGCCTTTAGCGTGTAAATATTCAAAGCTCTTTAGGGTCATTAAATGCGTGAA-----------------------------------CATCCTTG-CGTtcctggcagaaagcagatggcacattccgtctaacgaagagtttttgaaaaggactatttaca-aagctgtCGCAGGTG------------------------------------------------GCTCCTGCCCGCC-------------------------------------------------ACTGGGGG-------------------------------------------AGGCCTG-----------------------------GGGGT-GGGAGGGGAAG----------------------------------------------CTGTGACCACAACCCAG-------AGAGAGAGAACCC------------CCGCCGAGAG-------CGGAGTGTCAGCTGAGAGGCACGTGCCTTCAGTGGCC--TCACGGGA--------CTGGGGCCAGG---AGAACAAATGCTTCG---------TCctctccc-----------------atctccttctgagctc------tccaaggggctgagcccatcccgaag--------------------ccagaaggaa---g-----------------------------tctgtcacggcagcttgcattcatctgcctccgggcccagagc-------agagactgaggactgggcctagacgggcaaGT---ATTAATAGAAGGCGCCCGTCACGAGCATCTCGTGACAACAG-------TGGGCCTG-CTGCTCAAAAAAATGCCCAAACGCG--AAATGTGGCATATGTGTTCGTGGCATCCATCTAC---CCCT-TTAGCCAGTCTCTGGACCAGGATGCAGAGCCAGAGTCTGATTTAGATCGATGGGATT-G---------------------------------------------------TTTTTC-CCTGATAAATAATCTGAGGGTTGGTGCTCTCCTTTAAGTCCCTAGCAGCTGTGTGAACAAAT-GCCCACACACTGGCT-CCCAGGTCAGATGTCCAGCAGGCA-----GACGTTTCCTTTCCCGTTTCTGTATCTCAAGGGAAC-AGCAAGTCCAGAAGAAGAAAGGATTTGGTGACCGAGACTACAACCCGAAGt i calJac3.chr19 C 0 I 307 s mm10.chr1 178757347 1403 + 195471971 TGGGTAAGAGATGAATGAACTGCAGGCAAACAGCTCTTACCTTGTAGCTAAAGCTAGCAGTCA------------GAG--AGCACTGATTCCCAAGCAAGA--------GCCTGGTGCTCAGGGTTCCCTTAAAGCCAT---------ACAGAGCGTGTCAATGAAAGGATGG-GTAAAACCACAGAGAAAATGCTGTCTGCCTTCCCTGATCACTCACCCTGAGAATTTTGTGTTGTTTGC---------------------------TTTT---GATATTTAATCCCCTTCTTATTCATACAGGTTCTTTAAACATTGAAATGTTTGTAACTCTTTAGAGCTACTTACCCCTGGAAAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTTGGCAG-AAGTGGATGGCACACTCTATCAAATGAATTATTTTTGAAAGGAATT-CTTACT-GAGCTGGGGCAGGGGTAGGAAAGCCACAGGATGGT-------CCTTGAGCCTGGCAGCATAGT-CTCTTGCTACCCCCAAAGCAGGGTAGCTATGACGTAACCTGCAGGAAGGACACCATGAAGGGCT-GGGGCTGATGGTTATATCAGACAGTTATTGTCTCTTTACAGAGTGAAAGTCCTGTGTCTTTCCAAGCTCCTCTGTAGCTAATCAGAGC-AGGAAATGAAAAGGAAATCTGAAATGTTAGCTagctcttcgttactgtagcaaatacccaaggcaatcaatcagtttacaaagaggaagggctcatttttttgttcctagttagagatgccttgagtgcctgattcgttgggcctcactgttttagggcctatgatgagataacatgtcagaggcaagggataggaagaagggactgagtctgagatcccctccaaaggcgcagtgacttagatctcccactaggccccatcgatccaa-tggtccaccacacactggagaccaagcctttggcaaaggaccattgggga---gcggggacacttaaaatccaaatcatagcaTCTGCTGAGGCAGCTT-CATTCGTCTGCCTCCTGATGTAGATTGATGTAGAGAGAATGAGGAGTGGATTTAGCAG----------AATCAATGACACCCCCCAGT-------CCTCACAAGAACAGTGTGGAATGGGCCCA-CT----AGAAAAATATCCAAACATGCAAAATGAGACCTATGTTTTGGGGCCGCTTGTCTAT---CCCT-TCATCCAATCTCTGGA-----CTTCATCTTAAGAG-CTGATTTATACTGATGGGA-----------------------------TATTTCTT------------------TTTCTGGATTGAAAACAAACTCTTGAGCCTGTGGGCTCCTTTAAGCCTGGAACAACCGAGTGAATGGATGG-CTGCATACAGCCCGTCTGGGTCAGCTGCATGGCCAGCCACTGTGGTATTTCTTTTCCTATTCTAACATAACAAAGGGCTGACTAAG-CTAGGAGGGGAACAGAGCCAGGGAAGGAGACTACAGCCCTACAG i mm10.chr1 I 3348 C 0 s canFam3.chr7 36328982 1027 + 80974532 ---GTGAGACTTGTGGAGACTGCCTGTGAGCATCCGTCACCCCTTAGCCTAAACTTGTGGCCAGATGAGAGGGG--AA--AGCA-----------AAAGGATGCCCT---CCTAGTGCTCAGGGTTTATCTAAAGGCATGAGGAGTAGAAAGATTGTATCAGCCAAAGCCAGG-AAGGA---ACAGAGCAAATGTC-------------------------------TTTTGTGTTTTCTGCCCAGTTACCTGGAGACTCACTTTCTAGTTTTCCCTGTATTCAATATCCTTTGGCTTCATACAGATTCCTTTAACATG---ATATTCATAACATTTTAGGGTCATCAACCTCTTAAA-----------------------------------CGTTTTTA-GGATCCCAGCAGAAAACTCATGGCACAGTCTGTGCAATAAACAG-TTTCAAGAGAGGTTGTTCACA-AAGCTGTGGCAGGTGCTGAGAAGCC-----ATGAGAGATGCTCCCTGAACCAGAAAAGGAAGTGCTCCTAAT-----------------------------------------------------GCT-TGCA-------------------------------------------AGCCCAA-----------------------------GGGGTGAGGAGAGGAAG----------------------------------------------CCTTTACCACGAAGCAG-------AGATGAAGGACCG------------CTGACCAGAGCC-----GGGGTCATCGGCCAAGAGACACAA-----------CC--TCA--GCA--------CAGCAGCCAGG-----CACCAGTGCCTTG---------TCCTCTCCC-----------------------TTCTGATTGT------TCAAT-CAGCTGAG-ACATCCTGAAA--------------------CCAAAGGACATCTG-----------------------------TCTGTCCATGCGGTACACA-----------------------CAGAGGAGGGA---TGGGGAATGGACCTAGTGGACCTAGTGGCACCAATGAAAAATCCTCAGCAGAAGCATCTAATGTAAACAA-------TAGGCCTA-CTCATCAGAAGAATGTCCAAACATGC-AAAAATAGCACATGAATT-------TTCATATGCATTCCTTTCCAGCCCGTC------CTCGACCTCAG-----------GATTGAGATTGATGGCAATAG---------------------------------------------------TTTTTCTCTAGATAAAAAGCCTTGGGGT--GTGGTCTCTTGGAAGTCTGTAACAGCCAATCAAGCAAAGGGCCTGCACCCTGGTA-CACAGGCCACATGTACAGTAGGCA-----GACGGTTCCTCTCTTATTTCTACGTAACAAAAGAATAAGTAAGCCCTG----AGAAAGGATCAGGTGAAATAGAATAGCACCCTAAGT i canFam3.chr7 C 0 C 0 a score=765257.000000 s hg38.chr1_KI270759v1_alt 160712 205 + 425601 TATTTTAAGAGAGTGTTGAAAATGAGGG-CTATCTAAAGCAGAATGTGTGGCTGGGATTTACAAGGTAAATCAAAGCAGCTGTAGGAAGGAAAGAAA-AGATTTTC-AATGACAAACGTTTTCCTTTTTACTTGTTCTTTTGAAAGAAAGGGGAATGTGTGGGCAGACAGTTGTGAGGATCTTGACTTAAATACTTGACTGCCTTTTC s panTro4.chr1 224912910 205 + 228333871 TATTTTAAGAGAGTGTTGAAAATGAGGG-CTATTTAAAGCAGAACGTGTGGCTGGGATTTACAAGGTAAATCAAAGCAGCTGTAGGAAGGAAAGAAA-AGATTTTC-AATGACAAACGTTTTCCTTTTTACTTGTTCTTTTGAAAGAAAGGGGAATGTGTGGGCAGACAGTTGTGAGGATCTTGACTTAAATACTTGACTGCCTTTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226269827 203 - 229942017 TATTTTAAGAGAGTGTTGAAAATGAGGG-CTATTTAAAGCAGAATTTGTGGCTGGGATTTACAGGGTAAATCAAAGCAGCCATAGGAAGGAAAGAAA-AGATTTTC-AGTGACAAACGTTTTCC--TTTACTTGTTCTTTTGAAAGAAAGGGGAATGTGTGGGCAGACAGTTGTGAGGATCTTGACTTAAATACTTGACTGCCTTTTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140160932 202 - 143122389 TATTTTAAGAGAGTGTTGAAAATGAGGG-CTATTTAAAGCAGAATTTGTGGCTGGG-CTTACAAGGTAAATCAAAGCAGCCATAGGAAGGAAAGAAA-AGATTTTC-AATGACAAACGTTTTCC--TTTACTTGTTCTTTTGAAAGAAAGGGGAATGTGTGGGCAGACAGTTGTGAGGATCTTGACTTAAATACTTGACTGCCTTTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16875108 199 - 229590362 TATTTTAAGAGAGTGTTGAAAATGAGGG-CTATTTAAAGCAGAATTTGTGGCTGGGATTTACAAGGTAAATCAAAGCAGCCATAGGAAGGAAAG-----GATTTTC-AATGAAAAACATTTTCC--TTTACTTGTTCGTTTGAAAGAAAGGGGAATGTGTGGGCAGACAGTTGTGAGGATCTTGACTTAAATACTTGACTGCCTTTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223637415 199 - 227556264 TATTTTAAGAGAGTGTTGAAAATGAGGG-CTATTTAAAGCAGAATTTGTGGCTGGGATTTACAAGGTAAATCAAAGCAGCCATAGGAAGGAAAG-----GATTTTC-AATGAAAAACATTTTCC--TTTACTTGTTCGTTTGAAAGAAAGGGGAATGTGTGGGCAGACAGTTGTGAGGATCTTGACTTAAATACTTGACTGCCTTTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16688718 199 - 220367699 TATTTTAAGAGAGTGTTGAAAATGAGGG-CTATTTAAAGCAGAATTTGTGGCTGGGATTTACAAGGTAAATCAAAGCAGCCATAGGAAGGAAAT-----GATTTTc-aatgaaaaacattttcc--tttacTTGTTCGTTTGAAAGAAAGGGGAATGTGTGGGCAGACAGTTGTGAGGATCTTGACTTAAATACTTGACTGCCTTTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82486547 199 + 85787240 TATTTTAAGAAAGTGTTGAAAATGAGGG-CTATTTAAAGCAGAATTTGTGGCTGGGATTTACAAGGTAAATCAAAGCAGCCATAGGAAGGAAAG-----GAGTTTC-AATGAAAAACATTTTCC--TTTACTTGTTCGTTTGAAAGAAAGGGGAATGTGTGGGCAGACAGTTGTGAGGATCTTGACTTAAATACTTGACTGCCTTTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14167530 203 - 49578535 TGTTTTAAGGGAGTGTTGAAAGTGAGGG-CTGTTTAAAGCAGAATTTGTGGCTGGGATTTACAAGGTCAATAAAAGCAGCCATAGGAAGGAAAGGAA-AGATTTTC-AATGAAAAACATTTTCC--TTCACTGACTCCGCTGAAAGAAAGGGGAATGTGTGGGCAGGCAGTTCTGAGGATCTTGACTTAATTACTTGACTGCCTTTTC i calJac3.chr19 I 307 C 0 s mm10.chr1 178758750 204 + 195471971 TATTTTATGGGAATAGTATAAATTGTGG-TCATCTAAAGGAAGATTTATGCCTAGAATTTACAAGGTAAACAGAATCACCCACAGGAAGGAAAAGGACAGATTTTCAAACCCCAGACCTTCTCT--TCCGTTTTCTTAGCTGAAGGAGAGGTGAGCTGGTGGGCAGACA-TTGTGAGGATCTTGCTGTAAACTTTACATTGCCCTCCC i mm10.chr1 C 0 I 33 s canFam3.chr7 36330009 199 + 80974532 TATTTTCAGGGAGTGTTTAAAATGATGGCCTACTTAAAGGAAAATTGGTGGCTGGGATTTACAAAGTAAATGAAATCATCCGTAGGAAGGAAAGGAA-AGATTTTG-AACCCAAA-----TCTC--TCTATTCAGCTTATTAAACGAACAGCAAATGTGTGGGCAGACAGTTGTGAGGATCTTGACTTAAATGTTTGATTGCCTTCTC i canFam3.chr7 C 0 C 0 a score=63709.000000 s hg38.chr1_KI270759v1_alt 160917 21 + 425601 ACATGCATGCTTTAAAAACTC s panTro4.chr1 224913115 21 + 228333871 ACATGCATGCTTTAAAAACTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226270030 21 - 229942017 TCATGCATGCTTTAAAAACTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140161134 21 - 143122389 TCATGCATGCTTTAAAAACTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16875307 21 - 229590362 TCATGCATGCTTTTAAATCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223637614 21 - 227556264 TCATGCATGCTTTTAAATCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16688917 21 - 220367699 TCATGCATGCTTTGAAATCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82486746 21 + 85787240 TCATGCATGCTTTGAAATCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14167733 21 - 49578535 TCATGCATGCTTTATAAACTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36330208 21 + 80974532 TCATCAATGCTTTCAGAATTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178758954 33 + 195471971 I a score=834639.000000 s hg38.chr1_KI270759v1_alt 160938 289 + 425601 TCTGGTTCCggctgggcgtggtggctcacgcctgtaatcccagcactttaggaggccaaagcaggtggatcacttcaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctccactaaaaatacaaaaattagcagggcgtggtggtgagtgcctgtaatcccagctacttgggaggctgcggcacgagaattgcttgaacccaggggacagaggttgccgtgagctgagatggcgccaccgcactccagcctgggcaac------agactccatctcaaaa s panTro4.chr1 224913136 289 + 228333871 TCTGGTTCCggcggggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaagcaggtggatcacttcaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcagggcgtggtggtgagtgcctgtaatcccagctacttgggaggctgaggcacgagaattgcttgaacccaggagacagaggttgccgtgagctgagctggcgccaccgcactccagcctgggcaac------agactccatctcaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226270051 295 - 229942017 TCTGGTTCCggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggccaaagcaggtggatcacttcaggtcaggagttcgagaccagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaaattagcagggcgtggtggtgagtgcctgtaatcctagctacttgggaggctgaggcacgagaattgcttgaacccaggagacagaggttgctgtgagctgagatcgtgccaccgcactccagcctgggcaacagagcgagactccatctcaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140161155 295 - 143122389 TCTGGTTCCggctgggcgcagtggctcacgcctacaatcccagcactttgggaggccaaagcgggtggatcacttcaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcagggcgtggtggtgagtgcctgtaatcccagctacttgggaggctgaggcacgagaattgcttgaacccaggagacgggggttgctgtgagccgagatcacgccaccgcactccagcctgggcaacagaacgagactccatctcaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16875328 295 - 229590362 TCTCGTTCTggctgggtgcggtggctgacgcctgcaattccagcactttgggaggccgaagaggatggatcacttcaggtcaggagttcgaaaccagcctagccaacatgttgaaaccctgtctctactaaaaatacaaaatttagcacggcgtggtggtgagtgcctgtaatcccagctactcggaaggctgaggcaggagaatgacgtgaacccaggagacagagggtgcagtgagctgagatcgctccactgcactccagcctgggcaacagtgtgagactctgtctcaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223637635 295 - 227556264 TCTCGTTCTggctgggtgcggtggctgacgcctgaaatcccagcactttgggaggccgaagagaatggatcacttcaggtcaggagttcgaaaccagcctagccaacatgttgaaaccctgtctctactaaaaatacaaaagttagcacggcgtggtggtgagtgcctgtaatcccagctactcggaaggctgaggcaggagaatggcgtgaacccaggagacagaggttgcagtgagctgagatcgctccactgcactccagcctgggcaacagtgtgagactctgtctcaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16688938 295 - 220367699 TCTGGttccggctgggtgcggtggctgacgcctgaaatcccagcactttgggaggccgaagaggatggatcacttcaggtcaggagttcgaaaccagcctagccaacatggtgaaaccctgtctctactaaaaatacaaaagttagcacagcgtggtggtgagtgcctgtaatcccagctactcggaaggctgaggcaggagaatggcgtgaacccaggagacagaggttgcagtgagctgagatcgctccactgcactccagcctgagcaacagtgtgagactctgtctcaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82486767 295 + 85787240 TCTGGTTCCggctgggtgcggtggctgacgcctgaaatcccagcactttgggaggccgaagaggatggatcacttcaggtcaggagttcgaaaccagcctagccaacatggtgaaaccctgtctctactaaaaatacaaaaattagcacggcatagtggtgagtgcctgtaatcccagctactcggaaggctgaggcaggagaatggcgtgaacccaggagacggaggttgcagtgagctgagatcgctccactgcattccagcctgggcgacagtgtgagactctgtctcaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14167754 292 - 49578535 TCTGGCTGCgaccaggcgcaatggttcacgcctgtaatcccaacactttgggaggcc-aggcaggtagatca--tgaggtcaggggttcgagaccagcctggccaacatggtgaaatttcatttctactataaatacaaaaattatctgggcgtggtggtgggtgcctataatcccggctacttgggaagctgaggcacgagaatcacttgaactcaggaggcagaggttgcagtgagctgagatcatgtcagtatgctccagcctgggcaacagagcaagactctgtttcaaaa i calJac3.chr19 C 0 I 18 e mm10.chr1 178758954 33 + 195471971 I e canFam3.chr7 36330229 0 + 80974532 C a score=42149.000000 s hg38.chr1_KI270759v1_alt 161227 27 + 425601 agaaagacaaaccaacaaaaagaaaaa s panTro4.chr1 224913425 27 + 228333871 agaaagacaaaccaacaaaaagaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226270346 26 - 229942017 agaaagacaaaccaacaaaaag-aaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140161450 27 - 143122389 agaaagacaaaccaacaaaaagaaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16875623 27 - 229590362 agaaaaacaagccaacaaaaaaCCCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223637930 27 - 227556264 agaaaaacaagccaacaaaaaaCCCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16689233 26 - 220367699 agaaaaacaagccaacaaaaaa-cccc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82487062 26 + 85787240 agaaaaacaagccaacaaaaaa-CCCC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178758954 33 + 195471971 I e canFam3.chr7 36330229 0 + 80974532 C e calJac3.chr19 14168046 18 - 49578535 I a score=27841.000000 s hg38.chr1_KI270759v1_alt 161254 11 + 425601 CACAAAAACTT s panTro4.chr1 224913452 11 + 228333871 CACAAAAACTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226270372 11 - 229942017 CACAAAAACTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140161477 11 - 143122389 CACGAAAACTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16875650 11 - 229590362 CACAAAACCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223637957 11 - 227556264 CACAAAACCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16689259 11 - 220367699 cacaaaaccTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82487088 11 + 85787240 CACAAAACCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14168064 11 - 49578535 CCCCGAAACTT i calJac3.chr19 I 18 C 0 e mm10.chr1 178758954 33 + 195471971 I e canFam3.chr7 36330229 0 + 80974532 C a score=17739.000000 s hg38.chr1_KI270759v1_alt 161265 5 + 425601 TCTGG s panTro4.chr1 224913463 5 + 228333871 TCTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226270383 5 - 229942017 TCTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140161488 5 - 143122389 TCTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16875661 5 - 229590362 TCTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223637968 5 - 227556264 TCTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16689270 5 - 220367699 TCTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82487099 5 + 85787240 TCTGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14168075 5 - 49578535 TGTGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36330229 5 + 80974532 TCTGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178758954 33 + 195471971 I a score=509651.000000 s hg38.chr1_KI270759v1_alt 161270 153 + 425601 TTTCTTAAATGAATGACACTCACTTCGAGAAGAAGGCCCGTCTAACCTC---AGCCTTATTTTTGCATTCAGCTAGATAATAAAGTCACT-CAAGGTC---TTGGGTCCAACCAGATGC-----------------TAAAAATGGCTGTTTTTGCTCAACA-CTATAAGATTGGAAGT s panTro4.chr1 224913468 153 + 228333871 TTCCTTAAATGAATGACACTCACTTCGAGAAGAAGGCCCGTCTAACCTC---AGCCTTATTTTTGCATTCAGCTAGATAATAAAGTCACT-CAAGGTC---TTGGGTCCAACCAGATGC-----------------TAAAAATGGCTGTTTTTGCTCAACA-CTATAAGATTGGAAGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226270388 152 - 229942017 TTTCTTAAATGAATGACACTCACTTCCAGAATAAGGCCCGTCTAACCTC---AGCCTTATTTTT-CATTCATCTAGATAATAAAGTTACT-CAAGGTC---TTGGGTCCAACCAGATGC-----------------TAAAAATGGCTGCTTTTGCTCAACA-CTATAAGATTGGAAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140161493 153 - 143122389 TTTCTTAAATGCATGACACTCACTTCGAGAAGAAGGCCCATCTAACCTC---AGCCTTATTTTTGCATTCATCTAGATAATAAAGTCACT-CAAGGTC---TTGGGTCCAACCAGATGC-----------------TAAAAATGGCTGCTTTTGCTCAACA-CTATAAGATTGGAAGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16875666 153 - 229590362 TTTCTTAAATGATTGACACTCACTTTGAGAAGAAGGCCTGTCTAACCTC---AGCCTTATTTTTGCATTCATCTAGATAATAAAGTCACT-CAAGGTC---TTGAGTCCAACCAGATGC-----------------TAAAAAAGACCGCGTTTGCTCAACA-CTATAAGACTGGAGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223637973 153 - 227556264 TTTCTTAAATGATTGACACTCACTTTGAGAAGAAGGCCTGTCTAACCTC---AGCCTTATTTTTGCATTCATCTAGATAATAAAGTCACT-CAAGGTC---TTGAGTCCAACCAGATGC-----------------TAAAAAAGACCGCGTTTGCTCAACA-CTATAAGATTGGAGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16689275 153 - 220367699 TTTCTTAAATGATTGACACTCACTTTGAGAAGAAAGCCTGTCTAACCTC---AGCCTTATTTTTGCATTCATCTAGATAATAAAGTCACT-CAAGGTC---TTGAGTCCAACCAGATGC-----------------TAAAAAAGACCGCGTTTGCTCAACA-CTATAAGATTGGAGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82487104 153 + 85787240 TTTCTTAAATGATTGACACTCACTTCGAGAAGAAGACCTGTCTAACCTC---AGCCTTATTTTTGCATTCATCTAGATAATAAAGTCACT-CAAGGTC---TTGAGTCCAACCAGATAC-----------------TAAAAAAGACTGCGTTTGCTCAACA-CTATAAGATTGGAGGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14168080 153 - 49578535 TTCCTTAGATGAGTGACACTGACTTTGAGAAGAAGGCCCTCCTAATCTT---AGCCTTAGTTTTGCATTCATCAACATAATCAAATCACT-TGAGGTC---TTGGGTCCAACCAATTGC-----------------TAAAAATGGCTGCTTTTGCTGAAAA-TGATAAGATTGGAAGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178758987 156 + 195471971 TCTTTAAGATAACTGACAGTTACTCTGAGAGAAAGG--------AACTCACAAGCTTTAGT---------ATAAGGGGGCTAAAATCACC-CAGGGTT---TTGGGTTCAAGCATGTGCCATCCTGCCCAAGGTGATGACAGTGGCCGTTTCTTCTCAGGAGCTGTAGGAA-GGAAGC i mm10.chr1 I 33 C 0 s canFam3.chr7 36330234 155 + 80974532 CTTCTTAAGTTATTGGTAATCACTTCAAGAAGGCAGCCTATCTAACTTT--TAGCTTTAGT-TTGCATTCATCCAGATAATAAAGTCACTACAATGTCACATTCTGCTTA---AAATGG-----------------TGAAAATGGCTGTTTTTGCTCAGAAGCTGTAACACTgaaaat i canFam3.chr7 C 0 I 1168 a score=376852.000000 s hg38.chr1_KI270759v1_alt 161423 137 + 425601 CAGGGAGCTTTGGACTTTGGACATTTGGAACTGAGGATTCACCTAGAACATCAACGTTTTTGAACATTCCATAA-TAAAATAAATCCTGTTAACTCTTAGGCATTTATACCCCCAATGTGGTGGGATAAA-----------------------------------------------------------------------AGGATGAG s panTro4.chr1 224913621 137 + 228333871 CAGGGAGCTTTGGACTTTGGACAGTTGGAACTGAGGATTCACCTAGAACATTAACGTTTTTGAACATTCCATAA-TAAAATAAATTCTGTTAACTCTTAGGCATTTATACCCCCAATGTGGTGGGATAAA-----------------------------------------------------------------------AGGATGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226270540 137 - 229942017 CAGGGAACTTTGGACTTTGGACAGTTGGAACTAAGGATTCACCTAGAACATTAACGTTTTTGAACATTCCATAA-TAAAATAAATTCTGTTAACTCTTAGGCATTTATACCCCCAATGTGGTGGGATAAA-----------------------------------------------------------------------AGCATGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140161646 136 - 143122389 CAGGGAGC-TTGGACTTTGGACAGTTGGAACTGAGGATTCACCTAGAACATTAATGTTTTTGAATATTCCATAA-TAAAATAAATTCTGTTAACTCTTAGGCATTTATACCCCCAATGTGGTGGGATAAA-----------------------------------------------------------------------AGCATGAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16875819 137 - 229590362 CAGGGAGCTTTCCACCTTGGACTGTTGGAACTGAGGATTCATCTAGAGTGTTAATGTTTTTGAACATTCCATAA-TAAAATAAGTTCTGTTAACTCTTAGGCATTTATACCCACCATGTGGTCGTATAAA-----------------------------------------------------------------------AGAATGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223638126 137 - 227556264 CAGGGAGCTTTCCACCTTGGACTGTTGGAACTGAGGATTCATCTAGAATGTTAATGTTTTTGAACATTCCATAA-TAAAATAAGTTCTGTTAACTCTTAGGCATTTATACCCACCATGTGGTCGTATAAA-----------------------------------------------------------------------AGAATGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16689428 137 - 220367699 CAGGGAGCTTTCCACCTTGGACTGTTGGAACTGAGGATTCATCTAGAATGTTAATGTTTTTGAACATTCCATAA-TAAAATAAGTTCTGTTAACTCTTAGGCATTTATACCCACCATGTGGTCGtataaa-----------------------------------------------------------------------agaatgag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82487257 137 + 85787240 CAGGGAGCTTTCCACCTTGGACTGTTGGAACTGAGGATTCATCTAGAACATTAATGTTTTTGAACATTCCATAA-TAAAATAAGTTCTGTTAACTCTTAGGCATTTATACCCCCCATGTGATGGTATAAA-----------------------------------------------------------------------AGAATGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14168233 129 - 49578535 CAAGGAGCTTCGGACCTTGGACAGTTGGAACTGAGGA-TCACCTAAAATATTAATGTTTCTTAACAT--------TAAAATAAATTCTGTTAACAGTTAGGCATGTATGCACCCCACATGGTGGTACAGA-----------------------------------------------------------------------AGAATGAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178759143 191 + 195471971 TAGGAAGCCTCTAGCTCTGAACAGT-----------ATTCAGCAAGACCATTAACATTTCTGAGCATCCCATGATTAAAATAAGACC------ATGTTAGATACTTGCACA-GCTGTGTGGTGACATAAAAGGGGATCAGGGAAGAAGGAaggaggagggaggggaggaggaggagaaggaggaggaagagaagggagaggagaaggag i mm10.chr1 C 0 C 0 e canFam3.chr7 36330389 1168 + 80974532 I a score=599183.000000 s hg38.chr1_KI270759v1_alt 161560 188 + 425601 GAAAAAAGTG-------------GCACCAAGATGATGCGAGCTCTTTATTCTGTGTTT-CGGTCTCATCCCATTC-------AGATGCTTCTTCATGGAACATTT--C---CAGGCAGTGGTGCCTGATATTCTTCATTTCTTGAAAATTCTGGTTTT-GTTGCCC-TGAGAGTTTGAGATGAAAATCTGGTTCCTGGAGAAAAGGGTCTTCTTCT s panTro4.chr1 224913758 188 + 228333871 GAAAAAAGTG-------------GCACCAAGATGACGCAAGCTCTTTATTCTGTGTTT-CGGTCTCATCCCATTC-------AGATGCTCCTTCATGGAACATTT--C---CAGGCAGTGGTGCCTGATATTCTTCATTTCTTGAAAACTCTGGTTTT-GTTGCCC-TGAGAGTTTGAGATGAAAATCTGGTTCCTGGAGAAAAGGGTCTTCTTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226270677 187 - 229942017 GAGAAAAGTG-------------GCACCAAGATGATGCGAGCTCTTTATTCTGTGTTT-CGGTCTTATCCCGTTC-------AGATGCTCCTTCATGGAACATTT--C---CAGGCAGTGGTGCCTGATATTCTTCATTTCTTGAAAACTCT-GTTTT-GTTGCCC-TGGGAGTTTGAGGTGAAAATCTGGTTCCTTGAGAAAAGGGTCTTCTTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140161782 188 - 143122389 GAAAAAAGTG-------------GCACCAAGATCATGCAAGCTCTTCATTCTGTGTTT-TGGTCTCATCCCATTC-------ACAAGCTCCTTCATGGAACATTT--C---CAGGCAGTGGTACCTGATATTCTTCATTTCTTGAAAACTCTGGTTTT-GTTGCCC-TGAAAGTTTGAGATGAAAATCTGGTTCCTTGAGAAAAGGGTTTTCTTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16875956 188 - 229590362 GAAAAAGGTG-------------GCACCAAGATGATGCAAGCTCTTTATTCTGTGTTT-CGGTCTCATCCCATTC-------AGATGCTCCTTCATAGAACGTTT--C---CAGGCAGTGGTGCCTGATAGGCTTCATTTCTTGAAAACCCTGGCTTCGGTTGCCC-TGAGAGTTTGAGGTGAAAATCTGGTTCCTTGAG-CAAGGGTTATCTTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223638263 187 - 227556264 GAAAAAGGTG-------------GCACCAAGATGATGCAAGCTCTTTATTCTGTGTTT-CGGTCTCATCCCGTTC-------AGATGCTCCTTCATAGAACGTCT--C---CAGGCAGTGGTGCCTGATAGGCTTCATTTCTTGAAAACCCTGGCTTTGGTTGCCC-TGAGAGTTTGAGGTGAAAATCTGGTTCCTTGAG--AAAGGTTATCTTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16689565 188 - 220367699 gaaaaaggTG-------------GCACCAAGATGATGCAAGCTCTTTATTCTGTGTTT-CGGTCTCATCCCATTC-------AGATGCTCCTTCATAGAACATTT--C---CAGGCAGTGGTGCCTGATAGGCTTCATTTCTTGAAAACCCTGGCTTTGGTTGCAC-TGAGGGTTTGAGGTGAAAATCTGGTTCCTTGAG-AAAGGGTTATCTTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82487394 188 + 85787240 GAAAAAAGTG-------------GCACCAAGATGATGCAAGCTCTTTATTTTGTGTTT-CAGTCTCATCCCATTC-------AGATGCTCCTTCATATAACGTTT--C---CAGGCAGTGGTGCCTGATACGCTTCATTTCTTGAAAACCCTGGCTTTGGTTGCCC-TGAGAGTTTGAGGTGAAAATCTGGTTCCTTGAG-AAAGGGTTTTCTTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14168362 187 - 49578535 GGAGAGAATG-------------G--GCAAGGCAGTGCAAGCTCTTCATTCTGTGTTT-TGTTCTCATTCCGTTC-------GGATGTCCCTTCATAGAACATCT--C---CAGGCACTGGTGCCTGACGTGCTTTGTTTATTGAAAGTCCTGGTTTTGGCTGCCC-TGAGAGTTTGAGATGAAAATCCGCTTCCTTGAGAAAAGGGTTTTCTTCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178759334 209 + 195471971 gaagaagaggaggatggaggggaggaggaagaggaggCTGTTGGCTTATCCTGGGTCTACACTTTCATTTGAGCCTGTAGCAGGATGGTGCTTTGTGGAGTCTTTTGC---TAGCTTCTGATGTCTGCTAGACTCCCCTTGTTCAAA-TTCTGGATTTAACTGTTC-TTGAAGTTTGAGGTGAAATCCGGA--CTTTGAGAAAAGGATAGtctttt i mm10.chr1 C 0 I 1917 s canFam3.chr7 36331557 184 + 80974532 GAAAAAATTT-------------ATTTAAAGATGATGCAAACCATTTGCTCTGTATTT-AA--------TCATTA-------GGGTGGTGCTTTGTGGAGTATCT--CACTCAGGCAGTAATGCCTGGCATGCATCATTTCTT-AAAATACTGGTTTTGGTTGCTTGTGAGAGTTTGAGGTGACAATCTGGTTCCTTGAGAAAAGTGGTTTCTGCC i canFam3.chr7 I 1168 C 0 a score=284406.000000 s hg38.chr1_KI270759v1_alt 161748 112 + 425601 ATCAGTGAAGCCCGTCAGTGTTTGGTTCTGGAGTGACTGCAAACAAAAAGAGCCCTCCAAGTCTCAGCTCTTCCCCTCTCTGCTG----GTAGATGGAAATCTCTGGATCTGAATT s panTro4.chr1 224913946 112 + 228333871 ATCAATGAAGCCCGTCAGTGTTTGGTTCTGGAGTGACTGCAAACAAAAAGAGCCCTCCAAGTCTCAGCTCTTCCCCTCTCTGCTG----GTAGATGGAAATCTCTGGATCTGAATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226270864 112 - 229942017 ATCAATGAAGCCCATCAGTGTTTGGTTCTGGAGTGATTGCAGACAAAAAGAGCCCTCCAAGTCTCAGCTCTTCCCCCCTCTGCTG----GTAGATGGAAATCTCTGGATCTGAATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140161970 116 - 143122389 ATCAATGAAGTCCATCAGTGTTTGGTTCTGGAGTGATTGCAAACAAAAAGAGCCCTCCAAGTCCCAGCTCTTCCCCACTCTGCTGGCCTGCAGATGGAAATCTCTGGATCTGAACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16876144 109 - 229590362 CTCAGAGAAGCCCATCA-------GTTCTGGAGTGATTGCAAACACAATGAGCCCTCCAAGGCTCAGCTCCTCCCTGCTCGGCTGGCTGGTAGATGGAAATCTCTGGATCTGAATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223638450 109 - 227556264 CTCAGAGAAGCCCATCA-------GTTCTGGAGTGATTGCAAACACAATGAGCCCTCCAAGGCTCAGCTCCTCCCTGCTCGGCTGGCTGGTAGATGGAAATCTCTGGATCTGAATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16689753 109 - 220367699 CTCAGAGAAGCCCATCA-------GTTCTGGAGTGATTGCAAACAAAACGAGCCCTCCAAGGCTCAGCTCCTCCCTGCTCGGCTGGCTGGTAGATGGAAATCTCTGGATCTGAATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82487582 108 + 85787240 CTCAGAGAAGCCCATCA-------GTTCTGGAGTGAGCGCAAACAAAACGAGCCCTCCAAGGCTCAGCTCCTCCCCGCTC-ACTGGCTAGTAGATGGAAATCTCTGGATCTGAATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14168549 115 - 49578535 ATCGACAAAACCCATCAGGGTTTGGTTCTGGGGTGACTGCAGACAAAAAGAGCCCTCCCCGTCTCAGGTCCTCCCC-CTCTGCTGGCTGTTAGATGGAAATCTTTGGCTCTGAATT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36331741 69 + 80974532 ACTGCTGGAGCACATCAGTGTTTGGCCCTTGAGTGTCTGCAAACAAAAA-----------------------------------------------GAAGTCTTTGTTTCCCAGTT i canFam3.chr7 C 0 I 67 e mm10.chr1 178759543 1917 + 195471971 I a score=941868.000000 s hg38.chr1_KI270759v1_alt 161860 328 + 425601 CCTAATGGGCCCCACCAGTCTGATATTTTAATTAGTCTGGTTTAAACATGGTTGGAggccgggcgcggtggctcatgcctgtaatctcagcactttgggaggctgaggtgggcggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaacccc---atctctactaaaaatacaaaaattagttggccatggcggtgtgtgcc-tgtaatcccagctactagggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagctgagatcttgccactgcattccagcctgggcaacagagtcat s panTro4.chr1 224914058 328 + 228333871 CCTAATGGGCCCCATCAGTCTGATATTTTAATTAGTCTGGTTTAAACATGGTTGGAggccgggcgcggtggctcacgtctgtaatctcagcactttgggaggctgaggtgggcggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaacccc---atctctactaaaaatacaaaaattagttggccatggcggcgtgtgcc-tgtaatcccagctactagggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagctgagatcttgccactgcattccagcctgggcaacagagTCAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226270976 328 - 229942017 CCTAATGGGCCCCACCAGTCTGATATTTTAATTAGTCTCGTTTAAAAATGGTTGGAggccgggcgcggtggctcacgcctgtaatctcagcactttgggaggccgaggtgggcggatcacttgaggtcaggagtttgagaccagcttggccaacatggtgaaacccc---atctctactaaaaatacaaaaattagttggctatggcggcttgtgcc-cgtaatcccagctactagggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcagtgagctgagatcttgccactgcattccagcctgggcaacagagtcat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140162086 328 - 143122389 CCTAATGAGCCCCACCAGTCTGATATTTTAATTAGTCTGGTTTAAAAAGGGTTGGAggccgggcgtggtggctcacgcctgtaatctcagcactttgggagtctgaggtgggcggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaacccc---atctctactaaaaatacaaaaattagttggccgtggcggcatgtgcc-tgtaatcccagctactagggaagctgaggcaggagaatcacttgaacccaggaggtggaggttgtagtgagctgagatcttgccactgcattccagcctgggcaacagagtcat i nomLeu3.chr5 C 0 I 5 s rheMac3.chr1 16876253 325 - 229590362 CCTAATGGGCCCCACCTGTCTGATATCTTAATTAATCTGGTTTAAAAGTGGTTGGAggccaggcgcggtggctcacgcctgtaatcccagcagtttgggaggctgaggtgggcagatcac-tgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccc------ctctactaaaaatacaaaaattagttggccatggcagcgcatgccttgtaatcccagctacttgggagggtgaggcaggagaatcacttgcacccagaaggtggaggttgcagtgagctgagatcttgccactgcattccagcctgggcaacagagTCAT i rheMac3.chr1 C 0 I 13 s macFas5.chr1 223638559 325 - 227556264 CCTAATGGGCCCCACCTGTCTGATATCTTACTTAATCTGGTTTAAAAGTGGTTGGAggccaggcgcggtggctcacgcctgtaatcccagcagtttgggaggctgaggtgggcagatcac-tgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccc------ctctactaaaaatacaaaaattagttggccatggcagcgcatgccttgtaatcccagctacttgggagggtgaggcaggagaatcacttgcacccagaaggtggaggttgcagtgagctgagatcttgccactgcattccagcctgggcaacagagtcat i macFas5.chr1 C 0 I 13 s papAnu2.chr1 16689862 325 - 220367699 CCTAATGGGCCCCACCTGTCTGATATCTTAATTAATCTGGTTTAAAAGTGgttggaggccaggcgtggtggctcacgcctataatcccagcattttgggaggctgaggtgggcagatcac-tgaggtcaggagttcgagaccagcctggccaacgtggtgaaaccc------ctctactaaaaatacaaaaattagttggccatggcagtgcatgccttgtaatcccagctacttgggaggctgaggcaggagaatcacttgcacccagaaggtggaggttgcagtgagctgagatcttgccactgcattccagcctgggcaaccgagtcat i papAnu2.chr1 C 0 I 13 s chlSab2.chr25 82487690 329 + 85787240 CCTAATGGGCCCCACCCATCTGATATCTTAATTAGTCTGGTTTAAAAGTGGTTGGAggccgggcatggtggctcatgtctgtaatctcagcactttgggaggctgaggtgggcagattacttgaggtcaggagttggagaccagcctggccaacgtggtgaaacccc---gtctctactaaaaatacaaaaattagttggccatggcagcgcatgccttgtaatcccagctacttgggaggctgaggcaggagaatcacttgcacccagaaggtggaggttgcagtgagctgagatcttgccactgcattccagcctgggcaacagagtcat i chlSab2.chr25 C 0 I 379 s calJac3.chr19 14168664 306 - 49578535 CCTAAGGGGCCCCACCAGTCTCATATTTTAAATAGTCTGGTTTAAAAATGGTCGGAggctgggcgcagtggctcacgcctgtagtgtcagcactctgggaggctgaggtgggtggatcacctgaggtcaggacttcgagaccagcctggcccacatggagaaactctgtggtttctactaaaaatacaaaaatta------------------------gtaatcccagctactcgggaagctgaagcaggagaatcacttgaacccgggaggtggaagttgcagtgagccaagatcttgccactgcgttccagcctgggcgac--agTCAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178759543 1917 + 195471971 I e canFam3.chr7 36331810 67 + 80974532 I a score=46956.000000 s hg38.chr1_KI270759v1_alt 162188 20 + 425601 aaaaaaaaaaaGTGGGGGTT s panTro4.chr1 224914386 20 + 228333871 AAAAACAAAAAGTGGGGGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226271304 20 - 229942017 aaaaaaaaaaaGTGGGGGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140162419 20 - 143122389 aaaaaaaaaaaGCGGGGGTT i nomLeu3.chr5 I 5 C 0 s rheMac3.chr1 16876591 16 - 229590362 AAAAAGAA----TGGGGGTT i rheMac3.chr1 I 13 C 0 s macFas5.chr1 223638897 20 - 227556264 aaaaaaaaaaaGTGGGGGTT i macFas5.chr1 I 13 C 0 s papAnu2.chr1 16690200 20 - 220367699 aaaaaaaaaaagtgggggtt i papAnu2.chr1 I 13 C 0 s chlSab2.chr25 82488398 20 + 85787240 aaaaaaaaaaAGGGGGGATT i chlSab2.chr25 I 379 C 0 s calJac3.chr19 14168970 16 - 49578535 ----AGAAAAAGGGGGTGTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178759543 1917 + 195471971 I e canFam3.chr7 36331810 67 + 80974532 I a score=1591925.000000 s hg38.chr1_KI270759v1_alt 162208 512 + 425601 GGGGGGTTGGCAGTGGCCTTCACACACAGCAGTCTCTGCCTTTAATAATGGTTTAAATCATGTGTTAGATCTAGGCCCTTTG----------GTGAGAGCCAGGTTGAACACCCCTGAAGCATTTGCTCTTTGATCT--ATGGCCTCCTATTCCTTTGAACTTTCCCAGAAAGCAGGGTGGG-GGTGGGGATGGGGAACACTAACCCAGAATTCTTTAAATTTCTTTCTAAT------------------------------GATTTGGAATGATCAGAAACTTTTAAACCAACTTCATTTCCACCTTCCAGCCATGCTT-ATCCATCGTAAGAC-------------------TATTTTTATCTTCCATAAGAACCCATTCTCC-AGTGACTCTTAGATGGAAAACACAACACTACAGAGTTA--CCATAAACCACTTTTCCTTAATTGCTGACATGGAACCAGACAGAGGGGGGTCATTGGTTTGGAGAAGGAGAGGGAGGGAGAATATCTACGCCCTCTCTGTCCCCTTCCCAGACACCTCATTGCCTCTGAGGATTCTCTTCCCTTCACTCTCA s panTro4.chr1 224914406 509 + 228333871 GGGGGGTTGGCAGTGGCCTTCACACACAGCAGTCTCTGCCTTTAATAATGGTTTAAATCATGTGTTAGATCTAGGCCCTTTG----------GTGAGAGCCAGGTTGAACACC--TGAAGCATTTGCTCTTTGACCT--ATGGCCTCCTATTCCTTTGAACTTTCCCAGAAAGCAgggtggg-ggtgggggtggggAACACTAACCCAGAATTCTTTAAATTTCTTTCTGAT------------------------------GATTTGGAATGATCAGAAACTTTTAAACCAACTTCATTTCCACCTTCCAGCCATGCTT-ATCCATCATAAGAC-------------------GATTTTTATCTTCCATAAGAACCCATTCTCC-AGTGACTCTTAGATGGAAAACACAACACTGCAGAGTTA--CCATAAACCACTTTTCCTTAATTGCTGACATGGAACCAGACAGAGGGGG-TCATTGGTTTGGAGAAGGAGAGGGAGGGAGAATATCTACGCCCTCTCTGTCCCCTTCCCAGACACCTCATTGCCTCTGAGGATTCTCTTCCCTTCACTCTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226271324 512 - 229942017 GGGGGGTTGGCAGTGGCCTTCACACACAGCAGTCTCTGCCTTTAATAATGGCTTAAATCATGTGTTAGATCTAGGCCTTTTG----------GTGAGAGCCAAGTTGAACACCCCTGAAGCATTTGCTCTTTGACCT--ATGGCCTCCTATTCCTTTGAACTTTCCCAGAAAGCAGGGTGAG-GGTGGGGGTGGGGAACACTAACCCAGAATTCCTTAAATTTCTTTCTAAT------------------------------GATATGGAATGATCAGAAACTTTTAAACCAACTTCATTTCCACCTTCCAGCCATGCTT-ATCCATCATAAGAC-------------------TATTTTTATCTTCCATAAGAACCCATTCTCC-AATGACGCTTAGATGGAAAACACAACACTACAGAGTTA--TCATAAACCACTTTTCCTTAATTACTGACATCGAACCAAACAGACGGGGGTCATTGGTTTGGAGAAGGAGAGGGAGGGAGAATATCTACGCCCTCTCTGTCCCCTTCCTAGACACCTCATTGCCTCTGAGGATTCTCTTCCCTTCACTCTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140162439 540 - 143122389 GGGGGGTTGGCAGTGGCCTTCACACACAGCAGTCTCTGCCTTTAATAATGGCTTAAATCATGTGTTAGATCTAGGCCCTTTG----------GTGAGAGCCAGGTTGAACACCCCTCAAGCATTTGCTCTTTGACCT--ATGGCCTCCTATTCCTTTGAACTTTCCCAGAAAGCGGGGTG-G-GGTGGGGGTGGGGAACACTAACCCAGAATTCTTTAAATTTCTTTCTAATGATTTGGAATGATCAGAAACTTTTAAAACAGATTTGGAATGATCAGAAACTTTTAAACCAACTTCATTTCCACCTTCCAGCTGAGCTT-ATCCATCATAAGAC-------------------TATTTTTATCTTCCATAAGAACCCATTCTCC-AGTGACTCTTAGATGGAAAACACAACACCACAGAGTTC--CCATAAACCACTTTTCCTTAATTGCTGACATCAAACCAAACAGAGGGGG-TCATTGGTTTGGAGAAGGAGAGGGAGGGAGAATATCTACACCCTCTCTGTCCCCTTCCCAGACACCTCATTGCCTCTGAGGATTCTCTTCCCTTCACTCTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16876607 508 - 229590362 -GGGGATTGGCAGTGGCCTTCACATACAGCAGCCTCTGCCTTTAATAATGACTTAAATCATGTGTTAGATCTAGGCCCTTTG----------GTGAGAGCCAGGTTGAACACCCCTAAAGCATTTGCTGTTTGACCT--ATGGCCTCCTATTCCTTTGAACTTTCCCAGAAAGCAGGGTGAG-GGTGGGGGTGGGGAGCGGCAACCTAGAATTCTTTAAATTTCTTTCTAAT------------------------------GATTTGGAATGATCAGAAACTTTCAAACCAACTTCATTTCCACCTTCCACCCTTGCTT-ATCCATCATAAGAC-------------------TATTTTTATCTTCTGTAAGAACCCATTCTCC-AATGACTCTTAGATGGAAAACAGAACACT--AGAGTTA--CCATAAACCACTTTTCCTTAATTGCTGACATCGAACCACACAGAGGGGG-TCATTGGTTTGGAGAAGAGGAGGAAGGGAGAATATCTATGCCCTCTCTGTCCCCTTCCCAGACACCTCATTGCCGCTGAGGATTCTCTTCCCTTCACTCTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223638917 508 - 227556264 -GGGGATTGGCAGTGGCCTTCACATACAGCAGCCTCTGCCTTTAATAATGACTTAAATCATGTGTTAGATCTAGGCCCTTTG----------GTGAGAGCCAGGTTGAACACCCCTAAAGCATTTGCTGTTTGACCT--ATGGCCTCCTATTCCTTTGAACTTTCCCAGAAAGCAGGGTGGG-GGTGGGGGTGGGGAGCAGCAACCTAGAATTCTTTAAATTTCTTTCTAAT------------------------------GATTTGGAATGATCAGAAACTTTCAAACCAACTTCATTTCCACCTTCCACCCTTGCTT-ATCCATCATAAGAC-------------------TATTTTTATCTTCCGTAAGAACCCATTCTCC-AATGACTCTTAGATGGAAAACAGAACACT--AGAGTTA--CCATAAACCACTTTTCCTTAATTGCTGACATCGAACCACACAGAGGGGG-TCATTGGTTTGGAGAAGAGGAGGAAGGGAGAATATCTATGCCCTCTCTGTCCCCTTCCCAGACACCTCATTGCCTCTGAGGATTCTCTTCCCTTCACTCTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16690220 504 - 220367699 -gGGGATTGGCAGTGGCCTTCACACACagcagcctctgtgtgtg--tgtgacttaa--CCTGTGTTAGATCTAGGCCCTTTG----------GTGAGAGCCAGGTTGAACACCCCTAAAGCATTTGCTGTTTGACGT--ATGGCCTCCTATTCCTttgaactttctcagaaagcagggtggg-ggtgggggtggggagcagcaaCCTAgaattctttaaatttctttctaat------------------------------gATTTGGAATGATCAGAAACTTTCAAACCAACTTCATTTCCACCTTCCACCCTTGCTT-ATCCATCATAAGAC-------------------TATTTTTATCTTCCGTAAGAACCCATTCTCC-AATGACTCTTAGATGGAAAACAGAACACT--AGAGTTA--CCATAAACCACTTCTCCTTAATTGCTGACATGGAATCACACAGAGGGGG-TCATTGGTttggagaaggggaggaagggagaatatCTATGCCCTCTCTGTCCCCTTCCCAGACACCTCATTGCCTCTGAGGATTCTCTTCCCTTCACTCTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82488418 501 + 85787240 -GGGGATTGGCAGTGGCCTTCACACACAGCAGCCTCTGCCTTTAATAATGGCTTAAATCATGTGTTAGATCTAGGCCCTTTG----------GTGAGAGCCAGGTTGAACACCCCTAAAGCATTTGCTGTTTGACCT--ATGGCCTCCTATTCCTTTGAACTTTCCCAGAAAGCAGGGTGGG-GGTGGGGGTGGGCAGCACCAACCTAGAATTCTTTAAATTTCTTTCTAAT------------------------------GATTTGGAATGATCAGAAACTTTCAAACCAACTTCATTTCCACCTTCTACCCTTGCTT-ATCCATCATAAGAC-------------------TATTTTTATCTTCTGTAAGAAC-------CC-AGTGACTCTTAGATGGAAAACAGAACACT--AGAGTTA--CCATAAACCACTTTTCCTTAATTGCTGACATCGCACCAAACAGAGGGGG-TCATTGGTTTGGAGAAGAAGAGGAAGGGAGAATATCTACGCCCTCTCTGTCCCCTTCCCAGACACCTCATTGCCTCTGAGGATTCTCTTCCCTTCACTCTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14168986 478 - 49578535 --------GGCACTGGCCTTCACACACAGCAGCCTCTCCCTTCGATAATGGCTGAAGTCATGTGTTAGAGCCACGCCCTTTG----------GTGAGAGCCAGGCTGGACACC-GGGAAGCATTTGCTCTTTGACCT--ATGACCCCCTATTCCTTTGAACTTTCTCAGAAAACAGGGTGGGTGGCAGGGGTGGGGAGCACCAACCTAGACTTTTTTTAATTTCTTTTTAAT------------------------------GATTTGGAATAATCAGAAACTTTCAAAGCACCTTCATTTCCACCTCCCACCCTTGCCT-GTCCGTCATAAGAC------------------------TTATCTTGTGTAAGAA---------------ACGCTGA---AGAAAACAGAACAGTAGAGAGTTA--ACATAAACCAGTTTTCCTT-ATTGCTGACATGGAACCGAACAGAGGAGG-CCACTGGATTGGAGAAGGAGAGGGAGGGAGAATATGTGTGCCCTCTCTGTCCC--TCTCAGGCACCTCACTGCCTCTGAGGATTCTCTTCCCTTCATTCTCA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36331877 538 + 80974532 GTGCGGTTGGCAGTGGCTCTCACAC-CAGTGGTGCTTGCCTTGAACAACAGCTGACATCATGTGTGATGTGCAGGACATTTGTGAAACATAAGTGAGAACTAGGGTGAGAACT-CTGCAGCCTCTGCCCTTTGATTTGGAGAGTCACCTATACTTTTGAACTTTCTCAGGAAGT--GCTGGG-GGGATGGGTGTCTGTCACCATCTTAGAATTCTAAAAAATCCTTTCTACT------------------------------GATTTGGAATTATCAGAAACTTAGACGTTAACTTCATTTCTGCCTTTCGCCCTTCCCTGGGCCTCCATCAGACTCCTTCAGCCTCCATCCTGTATTTTCATCTTCCACAAAGACCCCTCCCCCTAATAACTCTTGCAGAGAAAACAG--CACTG-GGAGTTAGCGCATAAGCCTCCTCTCCTTGGTTACTGAGAGAGAAGCATGTAGAGGAGG-TCACTGGTCCCTAGGAGCAG-GGGAGGGCGAATATCTGCGCGCCCTCCATCCCCTTACCAGGTACCCTGCTGCTTCTGAGGACCCACTCTCCCAAGCTCTCA i canFam3.chr7 I 67 C 0 e mm10.chr1 178759543 1917 + 195471971 I a score=922756.000000 s hg38.chr1_KI270759v1_alt 162720 271 + 425601 TCACAAAAGAGGTAATTACCTTATTTCAGGCATCCTTTTTATAGAGCAGGCAGCAGCCTGTCACGGTAG-TAGCATTTCACTCTTCCAAG-------AATGGAACCA--TTGCACAATGTCCCAGGAGTCATTTGTGATTTTTATGAGAACCTGAAGAGGTTaaagaaaag--aacagaaaaataagaaaGCCTTTGCTGAGAAGAAGGGAGCTGTTAGCCAAAAGAGGGAATTTGGGCTGAGAAA-TTATTGTCTGAAATACTT--ACATCTTagagagagagag s panTro4.chr1 224914915 271 + 228333871 TCACAAAAGAGGTAATTACCTTATTTCAGGCATCCTTTTTATAGAGCAGGCAGCAGCCTATCACGGTAG-TAGCATTTCACTCTTCCAAG-------AATGGAACCA--TTGCACAATGTCCCAGGAGTCATTTTTGATTTTTATGAGAACCTGAAGAGGTTAAAGAAAAG--AACAGAAAAATAAGAAAGCCTTTGCTGAGAAGAAGGGAGCTGTTAGCCAAAAGAGGGAATTTGGGCTGAGAAA-TTATTGTCTGAAATACTT--ATATCTTAGAGAGAGAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226271836 271 - 229942017 TCACAAAAAAGGTAATTACCTTATTTCAGTCATCCTTTTTATAGAGCAGGCAGCAGCCTATCACGGTAG-TAGCATTTCACTCTTCCAAG-------AATGGAACCA--TTGCACAATGTCCCAGGAGTCATATGTGATTTTTATGAGAACCTGAAGAGGTTGAAGAAAAG--AACAGAAAAATAAGAAAGCCTTTGCTGAGAAGAAGGGAGCTGTTAGCCAAAAGAGGGAATTTGGGCTGAGAAA-TTATTGTCTGAAATACTT--ATATCTTAGAGAGAGAGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140162979 262 - 143122389 TCACAAAAGAGGTAATTACCTTATTTCAGGCATCCTTTTTATAGAGCAGGCAGCAGCCTATCACGGTAG-TAGCATTTCGCTCTTCCAAG-------AATGGAACCA--TTGCACAATGTCCCAGGAGTCATATGTGATTTTTATGAGAACCTGAAGAGGTTaaagaaaag--aacagaaaaataagaaaGCCTTTGCTAAGAAGAAGGGAGCTGTTAGCCAAAAGAGGGAATTTGGGCTGAGAAA-TTATTGTCTGAAATGCTT-----------AGAGAGAGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16877115 272 - 229590362 TCACGAAAGAGGTAATTACCTTATTTCAGGCATCCTTTTTATAGAGCAGGCAGCAGCCTATCACGGTAG-TAGCATTTCACTCTTCCAAG-------AATGGAACTG--TCGCACAATGTCCCAGGAGTCATCTGTGATTTTTATGAGAACCTGAAGAGGTTAAAGAACAG--AACAGAAACATAAGAAAGCCTTTGCGGAGAAGAAGGGAGCTGTTAGCCAAGAGAGGACGTTTGGGCTGAGAAAGTTATGGTCTGAAATACTT--GTATCTTAGAGAGGGAGAG i rheMac3.chr1 C 0 I 82 s macFas5.chr1 223639425 260 - 227556264 TCACGAAAGAGGTAATTACCTTATTTCAGGCATCCTTTTTATAGAGCAGGCAGCAGCCTATCACGGTAG-TAGCATTTCACTCTTCCAAG-------AATGGAACTG--TCGCACAACGTCCCAGGAGTCATCTGTGATTTTTATGAGAACCTGAAGAGGTTAAAGAACAG--AACAGAAACATAAGAAAGCCTTTGCGGAGAAGAAGGGAGCTGTTAGCCAAGAGAGGACGTTTGGGCTGAGAAAGTTATGGTCTGAAATACTT--GTATCTT------------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16690724 272 - 220367699 TCACGAAAGAGGTAATTACCTTATTTCAGGCATCCTTTTTATAGAGCAGGCAGCAGCCTATCACGGTAG-TAGCATTTCACTCTTCCAAG-------AATGGAACCG--TCGCACAACGTCCCAGGAGTCATCTGTGATTTTTATGAGAACCTGAAGAGgttaaagaaaag--aacagaaacataAGAAAGCCTTTGCGGAGAAGAAGGGAGCTGTTAGCCAAAAGAGGGAATTTGGGCTGAGAAAGTTATGGTCTGAAATACTT--CTATCTTAGAGAGGgagag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82488919 260 + 85787240 TCACAAAAGAGGTAATTACCTTATTTCAGGCATCCTTTTTATAGAGCAGGCAGCAGCCTATCACGGTAG-TAGCATTTCACTCTTCCAAG-------AATGGAACTG--TCGCACAGTGTCCCAGGAGTCATCTGTGATTTTTATGAGAACCTGAAGAGGTTAAAGAAAAG--AACAGAAACATGAGAAAGCCTTTGCGGAGAAGAAGGGAGCTGTTAGCCAAAAGAGGGAATTTGGGCTGAGAAAGTTATGGTCTGAAATACTT--AAATCTT------------ i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14169464 257 - 49578535 TCATGAAAGAGGCGATGACCTGAGTTCAGGCATCGCTTTTATGGAGCAGGCAGCAGCCCATCATGGCAG-CAGCATCTCACTCTCCCAAG-------AATGGAGCCA--CTGCACCGTGTCCCAGGAGTCAGATGTGACTCTCAC-----------GAGGTCAGAGAAAAG--AACAGAAACATAAGAAAGCCTTTGCTGGGAAGAAAGGAGCTATTGGCCAAAAGAGGGAATTTGGACTGAGAAAGCTGTTGTCTGAAATATATATATATCTTGGGGAA------ i calJac3.chr19 C 0 C 0 s mm10.chr1 178761460 243 + 195471971 TCATGGAAGCCCTGACCACCTGGCTTCAG-CA-CCTCCCTGTGTAGTAGACGGGAGC---TCACAGGAGCTGGAGTCTCGCTCTTCAGGGGAAATGTGATGGGACCA----------------AGGACTGCCCTGTGCGCTGGATGAGAATCCAAGGAGGTTAAGGAGGAGAAAACGGAACAATAAGAGAACC--CGCTGACAAG----------TCTGTCAGAAGAGGGAG-CTGGGCTCAGAAACTTACTGTCTGGAATCCTT--AGATCTTAAAGA------- i mm10.chr1 I 1917 C 0 s canFam3.chr7 36332415 273 + 80974532 TCACGAAAGAGGTAATTACCTTATTTCAGGCATCCGTCTTAGAGAGCAGGTGGCAGCC-GTCAGAGCAG-CAGTATTTCATTCTCCCAAG-------AGTGGAACCTCCTTGTAAAATGTCCCAGGAGCCACACGCCTTTTTTATGAAAACCTGGAGAGGTTAGAGACAAG--AATGAAAAAAATAAGGAGACTTTGCTGAAAAGAAGGGAGCTGTTTACCGAAAGAGGGAATTCAGGCTTAGAAAGTTATGTTTTGAAATTCTT--ATTTCTgagagagagagag i canFam3.chr7 C 0 C 0 a score=-138.000000 s hg38.chr1_KI270759v1_alt 162991 16 + 425601 agagagagagaggtga s panTro4.chr1 224915186 10 + 228333871 AGAGAG------GTGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226272107 4 - 229942017 ------------GTGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140163241 10 - 143122389 AGAGAG------GTGA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223639685 16 - 227556264 AGAGAGGGAGAGGTGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16690996 7 - 220367699 ---gtggggg------ i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82489179 16 + 85787240 AGAGAGGGAGAGGTGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14169721 4 - 49578535 ------------GTGG i calJac3.chr19 C 0 I 1 s mm10.chr1 178761703 14 + 195471971 --AGGGAGGGAACTGA i mm10.chr1 C 0 C 0 s canFam3.chr7 36332688 13 + 80974532 agagagaaagaga--- i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16877387 82 - 229590362 I a score=556691.000000 s hg38.chr1_KI270759v1_alt 163007 155 + 425601 gggagGGGCTTTGTTATTGAATTGAGTGACATTTCTCTTTATTATAAAGTTATAACGTCCGGCAGTAGAACTGCCAGT-AAAACTCGAT------CTGGAG-------------------------TGTTTTCTTTCCCCCTCGCTATGCTCTTTTAGCAGTTTGCATCTGGACTGTTAAATTAAGG s panTro4.chr1 224915196 155 + 228333871 GGGAGGGGCTTTGTTATTGAATTGAGTGACATTTCTCTTTATTATAAAGTTATACCGTCCGGCAGTAGAACTGCCAGT-AAAACTTGAT------CTGGAG-------------------------TGTTTTCTTTCCCCCTTGCTATGCTCTTTTAGCAGTTTGCATCTGGACTGTTAAATTAAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226272111 155 - 229942017 GGGAGGGGCTTTGTTATTGAATTGAGTGACATTTCTCTTTATTATAAAGTTATACCGTCCAGCAGTAGAACTGCCAAT-AAAACTCGAT------CTGGAG-------------------------TGTTTTCTTCCCCCCTCGCTATGCTCTTTTAGCAGTTTGCATCTGGACTGTTAAATTAAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140163251 155 - 143122389 GGGAGGGGCTTTGTTATTGAATTGAGTGACATTTCTCTTTATTATAAAGTTATAATGTCTGGCAGTAGAACTGCCAAT-AAAACTCGAT------CTGGAG-------------------------TGTTTTCTTTCCCCCTCGCTATGCTCTTTTAGCAGTTTGCATCTGGACTGTTAAATTAAGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16877469 156 - 229590362 GGGGGGGGCCTTGCTGTTGAATTGAGTGACGTTTCTCTTTATTATGAAGCTATAGCGTCTGGCAGTAGAACTGCCAATGAAAGCGCAAT------CTGGGG-------------------------TGTCTTCTTTCACCCTAGCTGTGCTCTTTTGGCAGTTTGTGTCTGGACTGTTAAATGAAGG i rheMac3.chr1 I 82 C 0 s macFas5.chr1 223639701 155 - 227556264 -GGGGGGGCTTTGCTGTTGAATTGAGTGACGTTTCTCTTTATTATGAAGTTATAGCGTCTGGCAGTAGAACTGCCAATGAAAGCGCAGT------CTGGGG-------------------------TGTCTTCTTTCACCCTAGCTGTGCTCTTTTGGCAGTTTGTGTCTGGACTGTTAAATGAAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16691003 156 - 220367699 ggggggggctttGCTGTTGAATTGAGTGACATTTCTCTTTATTATAAAGTTATAGCGTCTGGCAGTAGAACTGCCAATGAAAGCGCAAT------CTGGGG-------------------------TGTTTCCTTTCACCCTAGCTGTGCTCTTTTGGCAGTTTGTGTCTGGACTGTTAAATGAAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82489195 156 + 85787240 GGGGGGAACTTTGCTGTTGAATTGAGTGACATTTCTCTTTATTATAAAGTTATAGCGTCTGGCAGTAGAACTGCCAATGAAAGCGCGAT------CCCGAG-------------------------TGTTTTCTTTCACCCTAGCTGTGCTCTTTTGGCAGTTTGCGTCTGGACTGTTAAATGAAGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14169726 155 - 49578535 TGGAGGGGCTTTGCTATTGAATTGAGTGGCATTTCTCTTTATTACGAAGTTGTAACGTCTGGCAGTAGAACTGTCAATAAAAGCTCGAT------CTGGAG-------------------------TGTTTTCTT-CCCCCTAGCTATGCTCTTTTAGCGGTTTGCATCTGGACCGTTAAATTCAGG i calJac3.chr19 I 1 C 0 s mm10.chr1 178761717 141 + 195471971 -----GCCTGTTGTAACTGAATTGAGTGACATTTCTCTTTATTAAAAACTTATGAAGCCTGGCAGAAAAGGTGCCAATAAAAG------------CTGAGG-----------------------------TTCTCCCCTCTTAGTTATTTACTTTTAGCAGTTTGTATCTAGACTTTCAAATAAAGG i mm10.chr1 C 0 I 106 s canFam3.chr7 36332701 186 + 80974532 -gagagaCCGTTGTTACTGAGTTGAGTGACATTTCTCTTTATTAAAAAGTTATAAAGTCTGGTAGTAGAACTGCTGATAAAAGCTCAGTTCTACACTGTGgttttgttttgttttttttgtttttttgtgtgtttttttgCTAGCTCTGCTTTTTTGGCTGTTTGCATCAGGACTGTGAAATTAAGG i canFam3.chr7 C 0 C 0 a score=898210.000000 s hg38.chr1_KI270759v1_alt 163162 339 + 425601 GTTCTTGCATGGG-AAATACTTCTTATTCCTTCAGCAAGTGAAACTACTTGCTAAAGTAATT-ATTTTTAAATGCAAat--atatatacacacataccttgtg--------------------------------------------------------------------------------------------tgtatgtatttttaaatatt---------------------------t---------acacacaatatatattcatgtatatgtatgtatgt-tgtatttt-------------------------------------------tgtGGTTTTGTGTTTTAACATCAGCTGCGGTAGAAAGAGAAGGGTGGCTCTGCTAAGAG-TCCCTCCTCAACTGGCCT------------C-----------TGGCTGCAACGTAAATGACCTCCCTTGTTCCCTACCAGC---ATGGCTG--GAGCAAAAACGCCAGAGTCTCACGTACAAACATTACCTGGAGTCTTCCTACT s panTro4.chr1 224915351 339 + 228333871 GTTCTTGCATGGG-AAATACTTCTTATTCCTTCAGCAAGTGAAACTACTTGCTAAAGTAATt-atttttaaatgcaaat--atatatacacacataccttgtg--------------------------------------------------------------------------------------------tgtatatatttttaaatatt---------------------------t---------acacacaatatatattcatgtatatgtatgtatgt-TGTATTTT-------------------------------------------TGTGGTTTTGTGTTTTAACATCAGCTGGGGTAGAAAGAGAAGGGTGGCGCTGCTAAGAG-TCCCTCCTCAACTGGCCT------------C-----------TGGCTGCAACGTAAATGACCTCCCTTGTTCCCTACCAGC---ATGGCTG--GAGCAACAACGCCAGAGTCTCACGTACAAACATTACCTGGAGTCTTCCTACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226272266 366 - 229942017 GTTCTTGCGTGGG-AAATACTTCTTATTCCTTCAGCAAGTGAAACTACTTGCTAAAGTAATt-atttttaaatgtaaat--atatatacacacataccttgtg--------------------------------------------------------------------------------------------tgtatgtatttttaaatattcgtgtatatttttaaatattgtgtatat---------atacacaatatatattcgtgtatatgtatgtatgt-TGTATTTT-------------------------------------------TGTTGTTCTGTGTTTTAACATCAGCTGGGGTAGAAAGAGAAGGGTTGCTCTGCTAAGAG-TCCCTCCTCAACTGGCCT------------C-----------TGGCTGCGATGTAAATGACCTCCCTTGTTCCCTACCAGC---ATGGCTG--GAGCACCAACGCCAGAGTCTCCTGTAGAAACAGTACCTGGAGTCTTCCTACT i ponAbe2.chr1 C 0 I 702 s nomLeu3.chr5 140163406 336 - 143122389 GTTCTTGCATGGG-AAATACTTCTTGTTCCTTTAGCAAGTGAAACTACTTGCTAAAGTAATt-atttttaaatgtaaat--atatatacagacataccttgtg--------------------------------------------------------------------------------------------tgtatgtatttttaaacatt---------------------------t---------acacacaatatatattcatgtatacgtatgtatGT-TGTATTTT-------------------------------------------TGTTGTTTTGTGTTTTAACATCAGCTGCGTTAGAAAGAGAAG---TGGTCTGCTAAGAG-TCCCTCCTCAACTGGCCT------------C-----------TGGCTGCAATGTAAATGACCTCCCTCGTTCCCTACCAGC---ATGGCTG--GAGCACCAACGCCAGAGTCGCACACAGAAACATCACCTGGAGTCTTCCTCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16877625 340 - 229590362 GTTCTTGCATGGG-AAACACTTCTTATTCCTTTAGCAAGTGAAACTACTTGCTAAAGTAATT-GTTTTTAACTGGGACT--ATGTATACAAACATACCTtgtg--------------------------------------------------------------------------------------------tatatgtatttttgaatatt---------------------------t---------acgcacagtatgtattcgtgtgtatgtatgtgtgtgtgtatttt-------------------------------------------tgtTGTTTTGTGTTGTAACATCAGCTGGGGTAGGAAGAGAAGGGTTGCTATGCTAAGAG-TCTTTCCTCAACTGACCT------------C-----------TGGCTGCAACGTCAATGACCTCCCTTGTTCCCTACCAGC---GTGGCTG--GAGCACCAACGCCAGAATCTCACATGGAAACAGTACCTGGAGTCTTCCTACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223639856 336 - 227556264 GTTCTTGCATGGG-AAATACTTCTTATTCCTTTAGCAAGTGAAACTACTTGCTAAAGTAATT-GTTTTTAACTGGGACT--ATGTATACAAACATACCTTGTG--------------------------------------------------------------------------------------------TATATGTATTTTTGAATATT---------------------------T---------ACGCACAGTATGTATTCGTGTGTATGTA----CGTGTGTATTTT-------------------------------------------TGTTGTTTTGTGTTGTAACATCAGCTGGGGTAGGAAGAGAAGGGTTGCTATGCTAAGAG-TCTTTCCTCAACTGACCT------------C-----------TGGCTGCAACGTCAATGACCTCCCTTGTTCCCTACCAGC---GTGGCTG--GAGCACCAACGCCAGAATCTCACATAGAAACAGTACCTGGAGTCTTCCTACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16691159 340 - 220367699 GTTCTTGCATGGG-AAATACTTCTTATTCCTTTAGCAAGTGAAACTACTTGCTAAAGTAATT-GTTTTTAACTGTGACT--ATGTATACAAACATAccttgtg--------------------------------------------------------------------------------------------tatatgtatttttgaatatt---------------------------t---------acgcacagtatgtatttgtgtgtatgtatgtgtgcgtgtatttt-------------------------------------------tgttgttttgtgttgtaACATCAGCTGGGGTAGGAAGAGAAGGGTTGCTATGCTAAGAG-TCTTTCCTCAGCTGACCT------------C-----------TGGCTGCAACGTCAGTGACCTCCCTTGTTCCCTACCAGC---GTGGCTG--GAGCACCAACGCCAGAATCTCACATAGAAACAGTACCTGGAGTCTTCCTACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82489351 340 + 85787240 GTTCTTGCATGGG-AAATACTTCTTATTCCTTTAGCAAGTGAAACTACTTGCTAAAGTAATT-GTTTTTAACTGTGACT--ATGTATACAAACATACCTtgtg--------------------------------------------------------------------------------------------tgtatgtatttttgaatatt---------------------------t---------acacacaatatgtattcgtgtgtatgtatgtgtgtgtgtatttt-------------------------------------------tgttgttttgtgttgtAACGTCAGCTGGGGTAGGAAGAGAAGGGTTGTTCTGCTAAGAG-TCTTTCCTCAACTGGCCT------------C-----------TGGCTGCAATGTCAGTGACCTCCCTTGTTCCCTACCAGT---GTGGCTG--GAGCACCAACGCCAGAATCTCATGTAGAAACAGTACCTGGAATCTTCCTACT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14169881 471 - 49578535 GTTCTTGCATGGG-AAAGACTTCTTGTG-CTTTAGCAAGTGAAACTCCTTGCTAAAGTAGTTAGTTTTTAAGTGTAAATGCAGATACACAAACATACCTTGTGTGTGTGTGGTTTTAAATGTGTACACACACtgtatattcatgtctatgtgtgtgtgtgtttttaaatgtttacacatactgtatattcatgtctgtgtgtgtttttaaatgtt---------------------------t---------acacacactgtatattcatgtctatgtctgtgtgtgtgtgtttttaaatgtttacacactgtatattcatgtctgtgtgtgtgtgtgtgtgGTTTTGTGTT-TAGCATCGGCTGGGGTGGGAAGGGAAGAGTTGTCTGGCTAAGAT-TACTTCCCCAACTGACCT------------C-----------TGGCTGCAGCTGAAGTGACCTCCGTGGTTTCCTAGCAGA---ATGGCTG--GAGCACCCACAGCAGATCCAACTGTAGAAATAGCACTTCGA-TCTTCC---- i calJac3.chr19 C 0 C 0 s mm10.chr1 178761964 321 + 195471971 atTTTTGGGTAGGCAAATGCTTCTTATTTCTTCAACAAGGGATACTGCTTGCTGACATAGTT-A--TTTAAATATAAGT--GTATATATAGA-------TACG--------------------------------------------------------------------------------------------TGCACATCTTTTTAGAGGTA---------------------------TATAGTGGGCACACACACTGTAT-------TGTACGGACATGTGT-TGAGTTTG-------------------------------------------GCT---------------CATCAG-TGGGGTAGAAGGGGGTGGGTA--------AGGAGATGTCTCTCTCACTGGGCT------------AGAGAGAAGCAGTGGCTACAGTTTGAGTGACCATCCTTTGCCCTCCTCAGCCCTGAAGTTGCCTAGCATCAATGTCTGATCCTGGTGTAGCCATGTTTCCCTGACTCTCC----- i mm10.chr1 I 106 C 0 s canFam3.chr7 36332887 250 + 80974532 GTCCTAGTAGCGG-GAATACTTGCTATTATTTTAGCAAGTGAAACT-----------------ATTTTCAA----------ATA---------------TGTG--------------------------------------------------------------------------------------------TATATATATTTTTAATTGTG---------------------------T---------------------------------------------GGTTGTTT-------------------------------------------TGTTGTGT--TGTTCTAGCATCAGCT------GATAGAGAAGAGAATCTGTGCTGTAAGATCTTTCCCCAACGGGGTCATAAAGAAGAGAC-----------TGGCCGCC-CTTAAGCAACCTCCCTT------------C------------TGCCCCCAACATCAGGCTCTAGTGCACAGATATCACCTGTGGCCGTTCTGCT i canFam3.chr7 C 0 C 0 a score=62774.000000 s hg38.chr1_KI270759v1_alt 163501 40 + 425601 GCACTCCTGCACTGTGGCATCCAGAGAAACAGCGTCACTT s panTro4.chr1 224915690 40 + 228333871 GCACTCCTGCACTGTGGCATCCAGAGAAACAGCATCACTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226273334 40 - 229942017 GCACTCCTGCACTGCGGCATCCAGAGAAACAGCGTCACTC i ponAbe2.chr1 I 702 C 0 s nomLeu3.chr5 140163742 40 - 143122389 GTTCTCCTGCACTGTGGCATAGAGAGAAACAGTGTCACTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16877965 30 - 229590362 GCACTCCTGCACGGTGGCATCCAGAGAAAT---------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223640192 40 - 227556264 GCACTCCTGCACGGTGGCATCCAGAGAAATGGTGTCACTC i macFas5.chr1 C 0 T 41 s papAnu2.chr1 16691499 40 - 220367699 GCACTCCTGCACAGTGGCATCCAGAGAAACGGTGTCACTC i papAnu2.chr1 C 0 T 41 s chlSab2.chr25 82489691 38 + 85787240 GCACTTCTGCACGGTGGCATCCAGAGAAACGGTGTCAC-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14170352 4 - 49578535 ------------------------------AGCG------ i calJac3.chr19 C 0 C 0 s canFam3.chr7 36333137 28 + 80974532 GTGCTCCTGGGTCATGGCAC-----------ACGTCATT- i canFam3.chr7 C 0 C 0 e mm10.chr1 178762285 0 + 195471971 C a score=1465.000000 s hg38.chr1_KI270759v1_alt 163541 13 + 425601 GGGGAGAATGTCA s panTro4.chr1 224915730 13 + 228333871 GGGGAGAATGTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226273374 13 - 229942017 GGGGAGAATGTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140163782 12 - 143122389 AGGGATAGTGTC- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16877995 1 - 229590362 ------------G i rheMac3.chr1 C 0 C 0 s chlSab2.chr25 82489729 3 + 85787240 ----------TCA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178762285 0 + 195471971 C e canFam3.chr7 36333165 0 + 80974532 C e calJac3.chr19 14170356 0 - 49578535 C e papAnu2.chr1 16691539 41 - 220367699 T e macFas5.chr1 223640232 41 - 227556264 T a score=49762.000000 s hg38.chr1_KI270759v1_alt 163554 41 + 425601 TGCACTCCTGCACTGTGGCATCCAGAGAAACAGCGTCACTC s panTro4.chr1 224915743 41 + 228333871 TGCACTCCTGCACTGTGGCATCCAGAGAAACAGCGTCACTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226273387 41 - 229942017 TGCACTCCTGCACTGTGGCATCCAGAGAAACAGCGTCACTC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16877996 9 - 229590362 --------------------------------GTGTCACTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223640191 41 - 227556264 TGCACTCCTGCACGGTGGCATCCAGAGAAATGGTGTCACTC i macFas5.chr1 T 41 C 0 s papAnu2.chr1 16691498 41 - 220367699 TGCACTCCTGCACAGTGGCATCCAGAGAAACGGTGTCACTC i papAnu2.chr1 T 41 C 0 s calJac3.chr19 14170356 40 - 49578535 -GGACTCCCGCATTGTGGCAGACAGAGAAGCAGTGTCGCCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178762285 37 + 195471971 TGCACTCCTGTGCTGTGACCCACAGGGAA----TGTTACTC i mm10.chr1 C 0 C 0 s canFam3.chr7 36333165 10 + 80974532 -------------------------------GGTGCCCCTT i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82489732 0 + 85787240 C e nomLeu3.chr5 140163794 0 - 143122389 C a score=60.000000 s hg38.chr1_KI270759v1_alt 163595 1 + 425601 A s panTro4.chr1 224915784 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226273428 1 - 229942017 C i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16878005 1 - 229590362 A i rheMac3.chr1 C 0 C 0 s calJac3.chr19 14170396 1 - 49578535 A i calJac3.chr19 C 0 C 0 s mm10.chr1 178762322 1 + 195471971 A i mm10.chr1 C 0 C 0 s canFam3.chr7 36333175 1 + 80974532 G i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82489732 0 + 85787240 C e papAnu2.chr1 16691539 0 - 220367699 C e macFas5.chr1 223640232 0 - 227556264 C e nomLeu3.chr5 140163794 0 - 143122389 C a score=37144.000000 s hg38.chr1_KI270759v1_alt 163596 12 + 425601 GGGGAGAATGTC s panTro4.chr1 224915785 12 + 228333871 GGGGAGAATGTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226273429 12 - 229942017 GGGGAGAATGTC i ponAbe2.chr1 C 0 I 601 s rheMac3.chr1 16878006 11 - 229590362 -GGGAGAATGTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223640232 12 - 227556264 AGGGAGAATGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16691539 12 - 220367699 AGGGAGAATGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82489732 11 + 85787240 -GGGAGAATGTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14170397 12 - 49578535 GGGAAGAATGCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178762323 9 + 195471971 ---GAGAGCGCC i mm10.chr1 C 0 C 0 s canFam3.chr7 36333176 12 + 80974532 GGGAAGGATGTC i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140163794 0 - 143122389 C a score=465758.000000 s hg38.chr1_KI270759v1_alt 163608 137 + 425601 AGGCAGGGATGAGCTGCCTTGACTTGAAATGGTCTTGCCTCTCATCTCAATTAAAATCAAGCCATTAAC-TGGCTTTAATGTAGAGATTTTGTGGTTCAGTTTTCTTCAGTGGTATCCATTATA-AAAAAAGATGGGGG s panTro4.chr1 224915797 137 + 228333871 AGGCAGGGATGAGCTGCCTTGACTTGAAATGGTCTTGCCTCTCATCTCAATTAAAATCAAGCCATTAAC-TGGCTTTAATGTGGAGATTTTGTGGTTCAGTTTTCTTCAGTGGTATCCATTATA-AAAAAAGATGGGGG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140163794 137 - 143122389 AGGCAGGGGTGAGCTGCCTTGACTTGAAATGGTCTTGCCTCTCATCTCAATTAAAATCAAGCCATTAAC-TGGCTTTAATGTGGAGATTTTGTGGTTCAGTTTTCTTCAGTGGTATCCATTATA-AAAAAAGATGCGGG i nomLeu3.chr5 C 0 I 1 s rheMac3.chr1 16878017 137 - 229590362 AGGCAGGGATGAGCTGCCTTGACTTGAAATTGTCTTGCCTCTCATCTCAATTAAAATCAAGCCATTAAC-TGGCTTTAATGTGGAGATTTTGTGGTTCAGTTTTCTTCAGTGGTATCCATTATA-AAGAAAGATGGGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223640244 137 - 227556264 AGGCAGGGATGAGCTGCCTTGACTTGAAATTGTCTTGCCTCTCATCTCAATTAAAATCAAGCCATTAAC-TGGCTTTAATGTGGAGATTTTGTGGTTCAGTTTTCTTCAGTGGTATCCATTATA-AAGAAAGATGGGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16691551 137 - 220367699 AGGCAGGCATGAGCTGCCTTGACTTGAAATTGTCTTGCCTCTCATCTCAATTAAAATCAAGCCATTAAC-TGGCTTTAATGTGGAGATTTTGTGGTTCAATTTTCTTCAGTGGTATCCATTATA-AAGAAAGATGGGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82489743 137 + 85787240 GGGCAGGGATGAGCTGCCTTGACTTGAAATTGTCTTGCCTCTCATCTCAGTTACAATCAAGCCATTAAC-TGGCTTTAACGTGGAGATTTTGTGGTTCAATTTTCTTCAGTGCTATCCATTATA-AAGAAAGATGGGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14170409 138 - 49578535 AGGCAGGGCTGAGCCGCCTTGACCTGGAGTTGTCTCACCTCTCATCTCAGTTAAAATCAAGCCGTTAAC-TGGCTTGAATGTGGAGATTTTGTGATTCAGTTTTCTTCAATGGTATTCATTATATAAATAAGATGGGGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178762332 132 + 195471971 AGGCAGGGATGATCCGCCTGGACTTGAAGCTGCCTTGCCTTTCATCTTA-TTAAAATTAAGCCATTAAC-TACCTTTAATGTGGAGGTTTTGTGGCTTAATTTTCTTTGGTGGCATCCATTAAA-AACAGGGGTG---- i mm10.chr1 C 0 C 0 s canFam3.chr7 36333188 132 + 80974532 AGGAAGGGATGGTCTGCTGTGACTTGAAATTGCCTTGCCTCTCATCTCAGAGAAAATCAAGCCATTAACTTGGCTTTAATGTGGAGATTTTGTGGTTTCATTTTCTTTGGTGGTATCCATTAAA-AA------TGGGGG i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226273441 601 - 229942017 I a score=531238.000000 s hg38.chr1_KI270759v1_alt 163745 141 + 425601 TTATAGGTAGCAGAACTGATTGGCATAGTTGTCAGGCATAtagtatgta-ttattaatatttaatatgtattattaATG-TTCCC-TACCTATAGTGAGAGCTATCCTGGCTTAATC--AG-TTATCCTTCACTCCAGGACGAAACC s panTro4.chr1 224915934 141 + 228333871 TTATAGGTAGCGGAACTGATTGGCATAGTTGTCAGGCATTTAGTATGta-ttattaatatttaatatgtattattaatG-TTCCC-TACCTATAGTGAGAGCTACCCTGGCTTAATC--AG-TTATCCTTTACTCCAGGACGAAACC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274042 141 - 229942017 TTATAGGTAGCAGAACTGATTGGCATAGTTGTCAGGCATTTAGTATGaa-ttattaatatttaatatgtattattaata-ttCCC-TACCTATAGTGAGAGCTATCCTGGCTTAATC--CG-TTATCCTTTACTCCAGGACAAAACC i ponAbe2.chr1 I 601 C 0 s nomLeu3.chr5 140163932 141 - 143122389 TTATAGGTAGCAGAACTGATTGGCATAGTTGTCAGGCatttagtatgta-ttattaatatttaatatgtattattaata-ttCCC-TACCTATAGTGAGAGCTATCCTGCCTTAATC--AG-TTATCCTTTACTCCAGGACGAAACC i nomLeu3.chr5 I 1 C 0 s rheMac3.chr1 16878154 141 - 229590362 -GTTAGGTAGCAGAACCGATTGGCATAGTTGTCAGGCATTTAGTATGTATTTATTAATATTTAATATGCATTCTTAATA-TTCCC-TACCTATAATGAGAGCTATCCTGGCTTAATC--AG-TTATCCTTTACTCCAGGGCAAAGCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223640381 141 - 227556264 -GTTAGGTAGCAGAACCGATTGGCATAGTTGTCAGGCATTTAGTATGTATTTATTAATATTTAATATGCATTCTTAATA-TTCCC-TACCTATAATGAGAGCTATCCTGGCTTAATC--AG-TTATCCTTTACTCCAGGGCAAAGCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16691688 140 - 220367699 -GTTAGGTAGCAGAACCGATTGGCATAGTTGTCAGGCATTTagtatgta-ttattaatatttaatatgtattcttAATA-TTCCC-TACCTATAATGAGAGCTATCCGGGCTTAATC--AG-TTATCCTTTACTCCAGGGCAAAGCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82489880 140 + 85787240 -GTTAGGTAGCAGAACCGATTGGCATAGTTGTCAGGCatttagtatgta-ttattaatatttaatgtgtattcttaata-ttCCC-TACCTATAATGAGAGCTATCCTGGCTTAATC--AG-TTATCCTTTACTCCAGGGCAAAGCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14170547 140 - 49578535 -CTTAGGTAGCAGAAGTGACTGGCATAGTTGTCAGGCATTTAGTATG---TTATTAATACTTAATATGCATTATTAATATTTCCC-CACCTACAGTGAGAGCTATGCTGACATAATC--AGAGTGTCCTTTACTCCAGGATGAAACC i calJac3.chr19 C 0 C 0 s mm10.chr1 178762464 137 + 195471971 -----GGTAGCACAATTGACTGGCAGCATCTTCAGACATTTAGTATGTA-TTATTAATATTC-ACATGTATTATTAATA-TTCCC-TACCTGTACTGAGAGCTGTCATGGTTCAGTCTGAG-TTATCCCCAGAGCTATAATGAAACC i mm10.chr1 C 0 I 212 s canFam3.chr7 36333320 142 + 80974532 --AAGGGTAGCTGAATTGATTGGCATAGCCTTCAGGCATTTAGTATCTA-TTATTAATATTTAGTATGTATTATTAATA-TTCCCTTACTTATAGCAAGAGCTGTCATGGCTTAATCTGAA-TTATCCTTTACCCTCGAGTTAAACC i canFam3.chr7 C 0 C 0 a score=363942.000000 s hg38.chr1_KI270759v1_alt 163886 97 + 425601 AT-GC-TTTCTGTGGTTACCTGAATTCCAGGTGGGGCT-AAGCACAGCTAAGAGTATCTGGTAGCCTCTTCAAGTGGCTTTTGTATCACCCAAAC----CTTTT s panTro4.chr1 224916075 96 + 228333871 AT-GC-TTTCTGTGGTTACCTGAATTCCAGGTGGGGCT-AAGCACAGCTAAGAGTATCTGGTAGCCTCTTCAAGTGGCTTTTGTATCACCCAAAC----CTTA- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274183 101 - 229942017 AC-GC-TTTCTGTGGTTACCTGAACTCCAGCTGGGGCT-AAGCACAGCTAAGAGTATCTGGTAGCATCTTCAAGTGGCTTTTGTATCACCCAAACGTTTCTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140164073 98 - 143122389 ATGGC-TTTCTGTGGTTACCTGAATTCCAGGTGGGGCT-AAGCACAGCTAAGAGTATCTGGCAGCATCTTCAAGTGGCTTTTGTATCACCCCAAC----CTTTT i nomLeu3.chr5 C 0 I 301 s rheMac3.chr1 16878295 97 - 229590362 AT-GC-TTTCTGTGGTTACCTGAATTCCAGGTGGGGCT-AAGCACAGCTCAGAGTGTCTGGTAGCATCTTCAAGTGGTTTTTGAATCACTCACAC----CTTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223640522 97 - 227556264 AT-GC-TTTCTGTGGTTACCTGAATTCCAGGTGGGGCT-AAGCACAGCTCAGAGTGTCTGGTAGCATCTTCAAGTGGTTTTTGAATCACTCACAC----CTTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16691828 97 - 220367699 AT-GC-TTTCTGTGGTTACCTGAATTCCAGCTGGGGCT-AAGCACAGCTCAGAGTGTCTGGTAGCATCTTCAAGTGGTTTTTGAATCACTCACAC----CTTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82490020 97 + 85787240 AT-GC-TTTCTGTGGTTACCTGAATTCCAGGTGGGGCT-AAGCACAGCTCAGAGTGTCTGGTAGCATCTTCAAGTGGTTTTTGAATCACTCACAC----CTTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14170687 97 - 49578535 AT-GCTTTTTTGTGGTTACCTGAATTCCGGGTGGGGCG-GAGCAC-GCTAAGACTATCTGGTAGCATCTTCAAGTGACTTTTGTGTCACCCAAAC----CTTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178762813 96 + 195471971 gt-gt-TTTTCCTGATTACCTGAAATCCAGTTGGGGCTAAAGAATAGCTCAGAACATCTGGTAGTGTCTTAAAGTGACTTTT-TATTTCCCAGAC----CTTT- i mm10.chr1 I 212 C 0 s canFam3.chr7 36333462 97 + 80974532 AT-GT-TTTTTGTGGTTACCTGAATTCCGGGTTGGACT-AGGCAAAGCTACAAGTATCTGGAAGCATCTTCAAGTGACTTTTGCATTAGCTACAT----CTTTT i canFam3.chr7 C 0 C 0 a score=142279.000000 s hg38.chr1_KI270759v1_alt 163983 38 + 425601 AAAAACTGCCACACAAACTGATAAAAACGTATACTTCT s panTro4.chr1 224916171 38 + 228333871 AAAAACTGTCACACAAACTGGTAAAAACATATACTTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274284 38 - 229942017 AAAAACTGCCACATGAACTGGTAAAAACGTATACTTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140164472 38 - 143122389 aaaaaCTGCCACACAAACTGGTAAAAACGTATACTTCT i nomLeu3.chr5 I 301 C 0 s rheMac3.chr1 16878392 38 - 229590362 AAAAACTGCCACACAAAGTGGTAAAAACTTATGCTTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223640619 38 - 227556264 AAAAACTGCCACACAAACTGGTAAAAACTTATGCTTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16691925 38 - 220367699 AAAAACTGCCACACAAACTGGTAAAAAGTTATGCTTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82490117 38 + 85787240 AAAAACTGCCACACAAACTGGTAAAAACTTATGCTTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14170784 38 - 49578535 TAAAACTGCCACACAAACTGGTAAAAACTCATACTTCT i calJac3.chr19 C 0 I 365 s mm10.chr1 178762909 36 + 195471971 -AAAGCTGCCACACAGACTTGTAAACGTGCACACTGT- i mm10.chr1 C 0 C 0 s canFam3.chr7 36333559 38 + 80974532 TAAAGATGCCATACAGACTGGTAAAAACTAATATTTCT i canFam3.chr7 C 0 C 0 a score=46662.000000 s hg38.chr1_KI270759v1_alt 164021 16 + 425601 GTCTATCCTTGATTGA s panTro4.chr1 224916209 16 + 228333871 GTCTATCCTTGATTGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274322 16 - 229942017 GTCTACCCTTGATTGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140164510 16 - 143122389 GTCTATCCTTGATTGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16878430 16 - 229590362 GTCTATTGTTGATTGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223640657 16 - 227556264 GTCTATTGTTGATTGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16691963 16 - 220367699 GTCTATTGTTGATTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82490155 16 + 85787240 GTCTATCGTTGATTGA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178762945 14 + 195471971 ATTTATCCT--GCTAA i mm10.chr1 C 0 I 1 s canFam3.chr7 36333597 16 + 80974532 GTCTATTCTTGATTGA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14170822 365 - 49578535 I a score=501323.000000 s hg38.chr1_KI270759v1_alt 164037 147 + 425601 ATGTAATTGTCA------CTATTTATTTTAAAGAAATGGACAACTTAGAGCCCTATTGCAACACATCCCAAACCCAGCTCACTTAAACCATTAATCAAAAC----ATTTTTCCTCCCT----------------------ACCTGTGGTCTGTAAGGAGGATACAATCTAGTCTCTG------------------------------------AT s panTro4.chr1 224916225 147 + 228333871 ATGGAATTGTCA------CTGTTTATTTTAAAGAAATGGACAACTTAGAGCCCTATTGCAACACATCCCAAACCCAGCTCACTTAAACCATTAATCAAAAC----ATTTTTCCTGCCT----------------------ACCTGTGGTCTGTAAGGAGGATACAATCTAGTCTCTG------------------------------------AT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274338 182 - 229942017 ATGGAATTGTCAC----TCTATTTATTGTAAAGAAATGGACAACTTAGAGCCCTATTGCAACACATCCCAAACCCAGCTCACTTAAAGCATTAAT-AAAAC----ATTTTTCCTGCCT----------------------GCCTGTGCTCTGAAAGGAGGATACAATCTGGTCTCTGATCGTTGGGAATTCAGGATAGCATTTGATAAACT--AT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140164526 179 - 143122389 AAGGAATTGTCAC----TGTATTTATTTTAAAGAAATGGACAACTTAGAGCCCTATTGCAACACATCCCAAACCCAGCTCACTTAAACCATTAATCAAAAC----ATTTTTCCTG--------------------------CCTGTGCTCTGTAAGGAGGATACAGTCTAGTCTCTGATTGTTGGGAATTCAGGATAGCATTTGATAAACT--AT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16878446 183 - 229590362 ATGGAATTGTCAC----TGTATTTATTTTAATGAAATGGACAACTTGGAGCCCTATTGCAACACATCCCAAACCCAGCTCACttcaaccattaatcaaaac----atttttcctgcct----------------------acctgtgctctgtgaggaggatacaatctagtctctgattgctgggaattcagggtagcgtttgataaaat--at i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223640673 183 - 227556264 ATGGAATTGTCAC----TGTATTTATTTTAATGAAATGGACAACTTGGAGCCCTATTGCAACACATCCCAAACCCAGCTCGCttcaaccattaatcaaaac----atttttcctgcct----------------------acctgtgctctgtgaggaggatacaatctagtctctgattgctgggaattcagggtagcgtttgataaaat--at i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16691979 183 - 220367699 ATGGAATTgtcac----tgtatttattttaatgaaatggaCAACTTGGAGCCCTATTGCAACACATCCCAAACCCAGCTCGCTTCAACCATTAATCAAAAC----ATTTTTCCTGCCT----------------------ACCTGTGCTCTGTGAGGAGGATACAATCTAGTCTGTGATTGCTGGGAATTCAGGGTAGCGTTTGATAAAAT--AT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82490171 183 + 85787240 ATGGAATTGTCAC----TGTATTTATTTTAATGAAATGGACAACTTGGAGCCCTATTGCAACACATCCCAAACCCAGCTCGCTTCAACCATTAATCAAAAC----ATTTTTCCTGCCT----------------------ACCTGTGCTCTGTGAGGAGGACACAATCTAGTCTCTGATTGCTGGGAATTCAGGGTAGCGTTTGACAAAAT--AT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14171187 165 - 49578535 ATGGAATTGTCAC----TGCATTTATTTTAAGGAAATGGACAACTTAGAGCCCTATTGCAGCCCATCCCGA------------------ATTAATCAGAAC----ATTTTTACTGCCT----------------------ACCTGTGCTCTGTGAGGAGGATACCATCTAGTCTCCACTTGTTGGAAATTCAAGGTAGCATTTGATAAAAT--GT i calJac3.chr19 I 365 C 0 s mm10.chr1 178762960 208 + 195471971 ATGGAATTGTCCTCATACGTGTTTATTTTAATGAGGTGGAAACACCAGAGACATGTGATGGCACACCTCAGACACAGTTGACTTAGAC-ATTAACGGAGAC------TTTGACTGCGTGTCTAGGGTATGCACAACACTGAGCTAGGCTCCAAGAGAGGCATGCAATCCGGCCCCTGCTTTTTAAAAGTTCAAAGTCTTACAGAGTAGAAGAAAA i mm10.chr1 I 1 C 0 s canFam3.chr7 36333613 178 + 80974532 TTGGTATTGTCACCATGCATGTTTATTTTAATGAAATGGACTCCGTAGAGCCCTCTTGCAACATGTCCCAAACCCAGTTGACTTAAACAATTAACTAAAACTTTTTTTTTTACTGCCTACCTAAAAGGTGTATAGCACTGCACTGCCCTCTGCAAGGGGAACAT-ATCTAGTCCCTGCT------------------------------------ i canFam3.chr7 C 0 I 218 a score=562052.000000 s hg38.chr1_KI270759v1_alt 164184 172 + 425601 TGCACAATT-AAACAGGTGCAGAA-AGCAGTCTATGGATTCATGCCAAATGAGTGGTACTGGAAGGGAATTCTATGGGAGTTCAAAGAAACCGG----------AGGTCACAGTAGATC----------------------------------------------------------------AGAGTTGGTTGGCGGGAGTC-TC----------GGGGGAGAAATGGGGTTTGACGT-AGGCCTTGAAAGAACCGATA s panTro4.chr1 224916372 172 + 228333871 TGCACAATT-GAACAGGTGCAGAA-AGCAGTTTATGGATTCATGCCAAGTGAGTGGTACTGGAAGGGAATTCTATGGGAGTTCAAAGAAACCGG----------AGGTCACAGTAGATC----------------------------------------------------------------AGAGTTGGTTGGCGGGAGTC-TC----------GGGGGAGAAATGGGGTTTGACGC-AGGCCTTGAAAGAACCGATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274520 173 - 229942017 TGCACAATT-GAACAGGTGCAGAA-AGCAGTCTATGGATTCCTGCCAAACGAGTGGCACTGGAAGGGAATTCTATGGGAGTTCAAAGGAACGGG----------AGGTCACAGTAGATC----------------------------------------------------------------AGAGTTGGTTGCAGGGAGTCTTC----------GGGGGAGAAATGGGGTTTGACAC-AGGCCTTGAAAGAACCGATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140164705 173 - 143122389 TGCACAATT-AAACAGGTGCAGAA-AGCAGTCCGTGGATTCCTGCCAAATGAGTGGTACTGGAAGGGAATTCTATGGGAGTTCAAAGGAACGGG----------AGGTCACAGTAGATC----------------------------------------------------------------AGAGTTGGTTGCAGGGAGTCTTC----------GGGGGAGAAATGGGGTTTGACGT-AGGCCTTGAAAGAACCGATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16878629 173 - 229590362 tgcacaatc-aaacaggtgcagaa-agcagtctatggattcatgccaaatgagtggtactggaagggaattctgtgggagttcaaaggaatggg----------aggtcacagtagatc----------------------------------------------------------------agagttgattgcagagagtcttc----------aggggagaaatggggtttgacgt-aggccttgaaagaaccaata i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223640856 173 - 227556264 tgcacaatc-aaacaggtgcagaa-agcagtctatggattcatgccaaatgagtggtactggaagggaattctgtgggagttcaaaggaacggg----------aggtcacagtagatc----------------------------------------------------------------agagttggttgcagagagtcttc----------aggggagaaatggggtttgacgt-aggccttgaaagaaccaata i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16692162 173 - 220367699 TGCACAATC-AAACAGGTGCAGAA-AGCAGTCTATGGATTCATGCCAAATGAGTGGTACTGGAAGGGAATTCTATGGGAGTTCAAAGGAACGGG----------AGGTCACAGTAGATC----------------------------------------------------------------AGAGTTGGTTGCAGAGAGTCTTC----------AGGGGAGAAATGGGGTTTGACGT-AGGCCTTGAAAGAACCAATA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82490354 173 + 85787240 TGCACAATC-AAACAGGTGCAGAA-AGCAGTCTATGGATTCATGCCAAATGGGTGGTACTGGAAGGGCATTCTATGGGAGTTCAAAGGAATGGG----------AGGTCACAGTAGATC----------------------------------------------------------------AGAGCTGGTTGCAGAGAGTCTTC----------AGGAGAGAAATGGGGTTTGACGT-AGGCCTTGAAAGAACCAATA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14171352 169 - 49578535 TGCACAATT-GAACAGGTGCAAAA-AGTAGTCTACGGATTCATGCCAAATGAGTGGT-TTTGAAGCGAATTCT-CGGGAGTTCAAAG-AACTGG----------AGGTCGCAGTGGGTC----------------------------------------------------------------AGAGTTGGTATCAGGGAGTC-TT----------AGGGGAAAGGTGGGGTGAGACGC-AGGCCTTGAGAGAGCCCGCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178763168 253 + 195471971 TGTGCAGTCAAAATGGATGCCAAATAGTAGCTTCTGGAT--GTGAGAGATGAGTGTCACTGGCAG-AAATTCTGTGAGCATGCAAATCAGCTAGGTGGCCTGATAGGTTACAGCAtctctctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtTCATTGGGGAAAATATTTTTAGAGAAAAGATGGGGAGATGGAGTAAGACCTAAGGTTTTTCAAGACCC---- i mm10.chr1 C 0 C 0 s canFam3.chr7 36334009 159 + 80974532 TGCCTGATT-AAATAGATGCAAAA-AGTTGTCTGTGGATCTATGCAAAGTGAGCAGTACCACAAGGGAATTCTGCAGGAGTTCAAGAGAACTGG----------AGGTCACAGTAGATT----------------------------------------------------------------AGAGTTGG----GGAGCGTCTTT--------------------CAGGGTTTGACTC-AGGCCTTTAAAGAACCAGTA i canFam3.chr7 I 218 I 280 a score=533811.000000 s hg38.chr1_KI270759v1_alt 164356 179 + 425601 GGATTCAGACAAACCTGAGTAATGGGAGGGTGTTCCGAGCCACACACA--------CTGATTGTTC--AGTTTGGTTTGCTCAGCTAGAGGACGTGTTGGGAAGATGGGTCTGATTGGAGGTGACGTTGACACCCAGACTTAGATTCTAAGGGCAGG-------------------------------------------------------GGGAGTTCCCTGAAGGATTTTAAGTGCCAGGG s panTro4.chr1 224916544 179 + 228333871 GGATTCAGACAAACCTGAGTAACGGGAGGGTGTTCCGAGCCACACACA--------CTGATTGTTC--AGTTTGGTTTGCTCAGCTAGAGGACGTGTTGGGAAGATGGGTCTGATTGGAGGTGACGTTGACACCCAGACTTAGATTCTAAGGGCAGG-------------------------------------------------------GGGAGTTCCCTGAAGGATTTTAAGTGCCAGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274693 187 - 229942017 GGATTCAGACAAACCTGAGGAATGGGAGGGTGTTCTGAGCCACACACACACACACGCTGATTGTTC--AGTTCGGTTTGCTCAGCTAGAGGACGTGTTGGGAAGATGGGTCTGATTGGAGGTGACGTTGACACCCAGACTTAGATTGTAAGGGCAGG-------------------------------------------------------GGGAGTTCCCTGAAGGATTTTAAGTGCCAGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140164878 181 - 143122389 GGGTTCAGGCAAACCTGAGGAATGGGAGGGTGTTCCGAGCCACACACA--------CCGATTGTTCAGAGTTTGGTTTGCTCAGCCAGAGGACATGTTGGGAAGATGGGTCTGATTGGAGGTGACATTGACACCCAGACTTAGATTCTAAGGGCAGG-------------------------------------------------------GGGAGTTCCCTGAAGGATTTTAAGTGCCAGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16878802 181 - 229590362 ggattcagacaaacctgaggaatgggatggcgttccgagcCACATGCA--------CTGATTGTTCAGAGTTTGTTTTGCTCAGCCAGAGGACGTGTTGGGAAGATGGGTCTGATTGGAGATGACATGGACACCCAGACTTAGATTTTAAGGGCAGG-------------------------------------------------------GGGAGTTCCCTGAAGGATTTTAAGTGCCAGGG i rheMac3.chr1 C 0 I 58 s macFas5.chr1 223641029 181 - 227556264 ggattcagacaaacctgaggaatgggatggcgttccgagcCACATGCA--------CTGATTGTTCAGAGTTTGTTTTGCTCAGCCAGAGGACGTGTTGGGAAGATGGGTCTGATTGGAGATGACATGGACACCCAGACTTAGATTTTAAGGGCAGG-------------------------------------------------------GGGAGTTCCCTGAAGGATTTTAAGTGCCAGGG i macFas5.chr1 C 0 I 50 s papAnu2.chr1 16692335 181 - 220367699 GGATTCAGACAAACCTGAGGAATGGGATGGCGTTCCGAGCCACATGCA--------CTGATTGTTCAGAGTTTGGTTTGCTCAGCCAGAGGACGTGTTGGGAAGATGGGTCTGATTGGAGATGACATGGACACCCAGACTTAGATTTTAAGGGCAGG-------------------------------------------------------GGGAGTTCCCTGAAGGATTTTAAGTGCCAGGG i papAnu2.chr1 C 0 I 115 s chlSab2.chr25 82490527 236 + 85787240 GGATTCAGACAAACCTGAGGAATGGGATGGCATTCCGAGCCACATGCA--------CTGATTGTTCAGAGTTTGGTTTGCTCAGCCAGAGGACATGTTGGGAAGATGGGTCTGATTGGAGATGACATGGACACCCAGACTTAGATTTTAAGGGCAGGGAGTTCCCTGAAGGATTTTAAGTGTCAGGATGCCCAGACTTAGATTTTAAGGGCAGGGCGTTCCCTGGAGGATTTTAAGTGCCAGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14171521 179 - 49578535 GGATTCGTACAAACCTGAGGAATAAGAGGGTGATCCCGGACGCACACA---------TGAAGACTCAGAGTTTGGTTTGTTCAGCCAGAGGATGTGTTGGGATGATGGGGCTGATTGGAGGTGACGTTGACACCCAGACTTAGATTTTAAGGGCAG--------------------------------------------------------GGGAGCTCCCTGAAGGGTTTTAAGTCCCAGAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178763421 169 + 195471971 --ATTTGGATAAGCTGGAGAGATGAGCGGGTGTCCCAGGCTACGCACT--------GTGATTATCT-GACTTAGAGTTGTGCAGCCCAGGAGACTGT------GATGAGCCAGACC-CACATGGCATTGTCAACCATGTTTAGA-TCTCTGGGTAGG-------------------------------------------------------AGGCATT-TCTGGAGGGTGTTAAGTTTGGAAG i mm10.chr1 C 0 C 0 e canFam3.chr7 36334168 280 + 80974532 I a score=9773.000000 s hg38.chr1_KI270759v1_alt 164535 9 + 425601 GCCTGGTAG s panTro4.chr1 224916723 9 + 228333871 GCCTGGTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274880 9 - 229942017 GCCTGGTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165059 9 - 143122389 GCCTGGTAG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223641260 7 - 227556264 GCCAGGG-- i macFas5.chr1 I 50 C 0 s calJac3.chr19 14171700 9 - 49578535 GCCAGGTAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178763590 9 + 195471971 GCCTTGTAG i mm10.chr1 C 0 C 0 e canFam3.chr7 36334168 280 + 80974532 I e rheMac3.chr1 16878983 58 - 229590362 I e chlSab2.chr25 82490763 0 + 85787240 C e papAnu2.chr1 16692516 115 - 220367699 I a score=308028.000000 s hg38.chr1_KI270759v1_alt 164544 104 + 425601 TGCTCGTGTGTTAGGCAGAAGGGAGGCGAACTAGGCTGTCACAATCATCTAGATTGGAGTTACTGAGAATCTGGATCGGGTGGACATGAAAAGAAAGCAGTGGA s panTro4.chr1 224916732 104 + 228333871 TGCTCGTGTGTTAGGCAGAAGGGAGGTGAACTAGGCTGTCACAATCATCTAGATTGGAGTTACTGAGGATCTGGATTGGGTGGACATGAAAAGAAAGCAGTGGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274889 104 - 229942017 TGCTCATGTGTTAGGCAGAAGGGAGGCGAACTAGGCTGTCACAATCATCTAGATTGGAGTTACTGAGAATCTGGATCGGGTGGACATGAAAAGAAAGCAGTGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165068 104 - 143122389 TGCTCATGTGTTAGGCAGAAGGGAGGCAAACTAGGCTATCACAATCATCTAGATTGGAGTTACTGGGAATCCTGATCGGGTGGACATGAAAAGAAAGCAGTGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16879041 104 - 229590362 TGCTCGTGTGTTAGGCAGAAGGGAGGTGAGTTAGGCTGTCACAGTCATCTCGATTGGACTTACTGAGAATCTGGATCGGGCAGACAGGAAAAGAAAGCAGTGGA i rheMac3.chr1 I 58 I 43 s macFas5.chr1 223641267 104 - 227556264 TGCTCGTGTGTTAGGCAGAAGGGAGGTGAGTTAGGCTGTCACAGTCATCTCGATTGGACTTACTGAGAATCTGGATCGGGCAGACAGGAAAAGAAAGCAGTGGA i macFas5.chr1 C 0 I 31 s papAnu2.chr1 16692631 104 - 220367699 TGCTCGTGTGTTAGGCAGAAGGGAGGTGAGTTAGGCTGTCACAGTCATCTCGATTGGACTTACTGAGAATCTGGATCGGgcagacaggaaaagaaagcagTGGA i papAnu2.chr1 I 115 I 31 s chlSab2.chr25 82490763 104 + 85787240 TGCTCATGTGTTAGGCAGAAGGGAGGTGAGTTAGGTTATCACAGTCATCTCGATTGGAGTTACTGAGACTCTGGGTCGGGCGGACAGGAAAAGAAAGCAGTGGA i chlSab2.chr25 C 0 I 43 s calJac3.chr19 14171709 94 - 49578535 TGCCCATGTGTTAGGAGGA--GGAAATGAACCAGGCTG------TCGTCTAGATTGGAGTTACTGAGA-TCTGGATCGGGTGGGCGTG-AAAGAAAGCAATGGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178763599 103 + 195471971 AGTTGATGT-TTGGGGAAAGGAGAGGTAAACTCTGCTGCTGGCATGACTAAGCTTGGTGCTGCTGAGCATCTGGGTCAGGTGAACATGGAAAGAAAGCCCCGTA i mm10.chr1 C 0 C 0 e canFam3.chr7 36334168 280 + 80974532 I a score=3896.000000 s hg38.chr1_KI270759v1_alt 164648 3 + 425601 TTC s panTro4.chr1 224916836 3 + 228333871 TTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274993 3 - 229942017 TTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165172 3 - 143122389 TTC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223641402 3 - 227556264 GTC i macFas5.chr1 I 31 I 9 s papAnu2.chr1 16692766 3 - 220367699 GTC i papAnu2.chr1 I 31 I 9 s calJac3.chr19 14171803 3 - 49578535 CTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178763702 3 + 195471971 TTT i mm10.chr1 C 0 C 0 e canFam3.chr7 36334168 280 + 80974532 I e rheMac3.chr1 16879145 43 - 229590362 I e chlSab2.chr25 82490867 43 + 85787240 I a score=171552.000000 s hg38.chr1_KI270759v1_alt 164651 53 + 425601 AAGTTACAAAGGAAGAATTGGCAAGGGGTGGCAAAACAGTCACTGCTTGGAAA s panTro4.chr1 224916839 53 + 228333871 AAGTTACAAAGGAAGAATTGGCAAGGGGTGGCAAAACAGTCACTGCTTGGAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226274996 53 - 229942017 AAGTTACAAAGGAAGGATTGGCATGGGGTGGCAAAACAGTCACTGCTTGGAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165175 53 - 143122389 AAGTTACAAAGGAAGAATTGGCAAGGGGTGGCAAAACAGTCACTGCTTGGAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16879188 53 - 229590362 AAGTTACAAAGGAAGAATTGGCAAGGGGTGGCAAAACAGTCACTGCTTGGAAA i rheMac3.chr1 I 43 C 0 s macFas5.chr1 223641414 53 - 227556264 AAGTTACAAAGGAAGAATTGGCAAGGGGTGGCAAAACAGTCACTGCTTGGAAA i macFas5.chr1 I 9 C 0 s papAnu2.chr1 16692778 53 - 220367699 AAGTTACAAAGGAAGAATTGGCAAGGGCTGGCAAAACAGTCACTGCTTGGAAA i papAnu2.chr1 I 9 C 0 s chlSab2.chr25 82490910 53 + 85787240 AAGCTACAAAGGAAGAATTGGCAAGGGCTGGCAAAACAGTCACTGCTTGGAAA i chlSab2.chr25 I 43 C 0 s calJac3.chr19 14171806 53 - 49578535 AAGTTACGAAGCACGAATTGGCAAGGGCTGGCAAAAAAGTTACTGCTGGGAAA i calJac3.chr19 C 0 I 313 s mm10.chr1 178763705 37 + 195471971 AAGCTGCAAA----GAATTGGC------------TATAGTTCGTACCTGGAAA i mm10.chr1 C 0 C 0 e canFam3.chr7 36334168 280 + 80974532 I a score=28442.000000 s hg38.chr1_KI270759v1_alt 164704 10 + 425601 AACCATTTTt s panTro4.chr1 224916892 10 + 228333871 AACCATTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226275049 10 - 229942017 AACCATTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165228 10 - 143122389 AACCATTTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16879241 10 - 229590362 AGCCATTTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223641467 10 - 227556264 AGCCATTTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16692831 10 - 220367699 AGCCATTTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82490963 10 + 85787240 AGCCATTTTT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178763742 10 + 195471971 AGCCACTGTT i mm10.chr1 C 0 I 29 e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14171859 313 - 49578535 I a score=33530.000000 s hg38.chr1_KI270759v1_alt 164714 13 + 425601 ctgaagcataatg s panTro4.chr1 224916902 13 + 228333871 CTGAAGCATAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226275059 13 - 229942017 CTGAAGCATAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165238 13 - 143122389 CTGAAGCATAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16879251 13 - 229590362 CTGAAGCATAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223641477 13 - 227556264 CTGAAGCATAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16692841 13 - 220367699 CTGAAGCGTAATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82490973 13 + 85787240 CTGAAGCATAATG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178763752 29 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14171859 313 - 49578535 I a score=3000.000000 s hg38.chr1_KI270759v1_alt 164727 2 + 425601 cc s panTro4.chr1 224916915 2 + 228333871 CC i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16879264 2 - 229590362 CC i rheMac3.chr1 C 0 I 2 s macFas5.chr1 223641490 2 - 227556264 CC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16692854 2 - 220367699 CC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82490986 2 + 85787240 CC i chlSab2.chr25 C 0 I 2 e mm10.chr1 178763752 29 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14171859 313 - 49578535 I e nomLeu3.chr5 140165251 0 - 143122389 C e ponAbe2.chr1 226275072 0 - 229942017 C a score=571.000000 s hg38.chr1_KI270759v1_alt 164729 2 + 425601 ac s panTro4.chr1 224916917 2 + 228333871 AC i panTro4.chr1 C 0 C 0 s macFas5.chr1 223641492 1 - 227556264 -C i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16692856 1 - 220367699 -C i papAnu2.chr1 C 0 I 1 e mm10.chr1 178763752 29 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14171859 313 - 49578535 I e rheMac3.chr1 16879266 2 - 229590362 I e chlSab2.chr25 82490988 2 + 85787240 I e nomLeu3.chr5 140165251 0 - 143122389 C e ponAbe2.chr1 226275072 0 - 229942017 C a score=26213.000000 s hg38.chr1_KI270759v1_alt 164731 303 + 425601 tttgtttttgtttttgtttttgagatggagtctcactctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggaccacaggcacccgccaccacgcccggctaattttttgtatttttagtagagacagggtttcaccgagttagccaggatggtctccatctcctgaccttgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcccggcca s panTro4.chr1 224916919 297 + 228333871 ------tttgtttttgtttttgagacggagtctcactctgtcacccaggctggagtgcagtggtgcgatctcggctcactgcaagctccacctcccgggttcacgccattctactgcctcaacctcctgagtagctgggactacaggcgcccaccaccacgcccggctaattttttgtgtttttagtagagacggggtttcaccaagttagccaggatggtctcgatctcctgaccttgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcccccggccA i panTro4.chr1 C 0 C 0 e mm10.chr1 178763752 29 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14171859 313 - 49578535 I e rheMac3.chr1 16879266 2 - 229590362 I e chlSab2.chr25 82490988 2 + 85787240 I e papAnu2.chr1 16692857 1 - 220367699 I e macFas5.chr1 223641493 1 - 227556264 I e nomLeu3.chr5 140165251 0 - 143122389 C e ponAbe2.chr1 226275072 0 - 229942017 C a score=1000.000000 s hg38.chr1_KI270759v1_alt 165034 1 + 425601 c s panTro4.chr1 224917216 1 + 228333871 C i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226275072 1 - 229942017 C i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165251 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14172172 1 - 49578535 C i calJac3.chr19 I 313 C 0 e mm10.chr1 178763752 29 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e rheMac3.chr1 16879266 2 - 229590362 I e chlSab2.chr25 82490988 2 + 85787240 I e papAnu2.chr1 16692857 1 - 220367699 I e macFas5.chr1 223641493 1 - 227556264 I a score=3710.000000 s hg38.chr1_KI270759v1_alt 165035 3 + 425601 cac s panTro4.chr1 224917217 3 + 228333871 CAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226275073 3 - 229942017 CAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165252 3 - 143122389 CAC i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14172173 3 - 49578535 CAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178763781 3 + 195471971 CAT i mm10.chr1 I 29 C 0 e canFam3.chr7 36334168 280 + 80974532 I e rheMac3.chr1 16879266 2 - 229590362 I e chlSab2.chr25 82490988 2 + 85787240 I e papAnu2.chr1 16692857 1 - 220367699 I e macFas5.chr1 223641493 1 - 227556264 I a score=355820.000000 s hg38.chr1_KI270759v1_alt 165038 125 + 425601 tttgacccctgtctttgctctg--tgtctcctgaaggacaagaag---------gccatcgtgctaggcttcggaattccctgcctattcgtgcataatttgaaatcatctctatgtagcTTTCAGATGCTCATTT s panTro4.chr1 224917220 125 + 228333871 TTTGACCCCTGTCTTTGCTCTG--TGTCTCCTGAAAGAAAAGAAG---------GCCATCGTGCTAGGCTTCAGAATTCCCTGCCTATTCTTGGCTAATTTGAAATCATCTCTATGTACCTTTCAAATCCTCATTT i panTro4.chr1 C 0 I 233 s ponAbe2.chr1 226275076 124 - 229942017 TTTGACCCA-GTCTTTGCTCTG--TGTCTCCTGAAGGACAAGAAG---------GCCATCATGCTAGGCTTTGTAATTCCCTGCCTATTGGTGCATAATTTGAAATCATCTCTATGTAGCTTTCAGATGCTCATTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165255 127 - 143122389 GTTGACCCCAGTCTTTGCTCTGTCTCTCTCCTGAAGGACAAGAAG---------GCCATCGTGCTAGGCTTCGTAATTCCCTGCCTATTGGTGCATAATTTGAAATCATCTCTATGTAGCTTTCAGATGCTCATTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16879268 134 - 229590362 TTTGACCCCAGTCTTTGCTGTG--TGTCTCCTGAAGGACTAGAAGGACTAGAAGGCCGTTGTGCGAGGCTTCGTAATTCGCTGCCTATTGGTACAGAATTGGAAATCATCTCTATGTCGCTTTCAGATGCTCATTT i rheMac3.chr1 I 2 C 0 s macFas5.chr1 223641494 134 - 227556264 TTTGACCCCAGTCTTTGCTGTG--TGTCTCCTGAAGGACTAGAAGGACTAGAAGGCCGTCGTGCGAGGCTTCGTAATTCGCTGCCTATTGGTACAGAATTGGAAATCATCTCTATGTCGCTTTCAGATGCTCATTT i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16692858 134 - 220367699 TTTGACCCCAGTCTTTGCTGTG--TGTCTCCTGAAGGACTAGAAGGACTAGAAGGCCGTCGTGCGAGGCTTCGTAATTCGCTGCCTATTGGTACAGAATTGGAAATCATCTCTATGTCGCTTTCAGATGCTCATTT i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82490990 130 + 85787240 TTTGACCCCAGTCTCTGCTCTG--TGTCTCCTGAAGGACTAGAAGGACTAGACAGCCGTCGTGCGAGGCTTCG----TCACTGCCTATTGGTACAGAATTGGAAATCATCTCTATGTCGCTTTCAGATGCTCATTT i chlSab2.chr25 I 2 C 0 s calJac3.chr19 14172176 124 - 49578535 TTTGACCCTGGTCTTGGCTCTG--TGTCTCCTGAAGGACAAGAAG---------GCCATCCTGCCAGGCTTCAGAATTCCCTGCCTAGTGGTGCAT-CTTCGAAATCATTTCTGTGCAGCTTGCAGATGCTCGTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178763784 113 + 195471971 ------------TTTGACTCTT--TATCTCTGGAAGGACAAGATG---------ACCATCTTGCTACATTTTATAATTTCCTGTCAATCTGTATATAATTTGAAATCTTCTCTATGAAATTTTCAGATTCTAATTT i mm10.chr1 C 0 C 0 e canFam3.chr7 36334168 280 + 80974532 I a score=709380.000000 s hg38.chr1_KI270759v1_alt 165163 299 + 425601 CCTTCTGGACTCCCTAGTACAATTTCATCAATTTCATA------------TTCTCTCTCTCTCTCCTCtcataggtatatagtata----tattttacttgatgactgactcaagaattttcagatg---------ggttctgatcttgtttag----------------------------------------------------------------------------------------------ctggaagcattttctaga------------------------------------------------gagccaaagccattgttattttggcttctacatttattgtcgtatattcaagcagaacagtgtaaaaatgattaccaaagttgagcctatta----TTTAGATTTTGAT----------Agtatgtgtg----------------tgtgt--------gtgtgtATA--------------TATATATATAtttgagaaggagt s panTro4.chr1 224917578 293 + 228333871 CCTTCTGGACTCCCTAGTACAATTTCATCAATTTCATA------------TTCTCTCTCTCTCTCCTCTCACAGGTATATAGTATA----TATTTTACTTGATGACTGACTCAAGAATTTGAAGATG---------GGTTCTGATCTTGTTTAA----------------------------------------------------------------------------------------------CTGGAAGCATTTTCTAGA------------------------------------------------GAGCCAAAGCCATTGTGATTTTGGCTTCTACATTTATTGTCGTATATTCAAGCAGAACAGTGTAAAAATGATTACCAAAGTTGAGCCTATTA----TTTAGATTTTGAT----------AGTATGTGTG----------------TGTAT--------------ATA--------------TATATATATAtttgagaaggagt i panTro4.chr1 I 233 C 0 s ponAbe2.chr1 226275200 294 - 229942017 CCTTCTGGACTCCCTAGCACAATTTCATCAATTTCATAG--------TCTGTCTCTCTCTCTCTCCTCTCATAGGTATATAGTATA----TATTTTATTTGATGACTGGCTCAAGAATTTTAAGATG---------GGTTCTGATCTTGTTTAG----------------------------------------------------------------------------------------------CTGGAAGCATTTTCTAGA------------------------------------------------GAGGCAAAGCCATTCTTGTTTTGGCTTCTACATTTATTGTCGTATATTCAAGCAGAACAGTGCAAAAATGATTACCAAAGTTGAGCC---TA----TTTAGATTTTGAT----------AGTATGTGTG----------------TGTGT--------------ATA--------------TATATATATAtttgagaaggagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165382 300 - 143122389 CCTTCTGGACGCCCTAGTACAATTTCATCAATTTCGTATtctctctctctctctctctctctctcctctcATAGATATATAGTATA----TATTTTATTTGATGACTGGCTCAAGAATTTTAAGATG---------GGTTCTGATCTTGTTTAG----------------------------------------------------------------------------------------------CTGGAAGCATTTTCTAGA-------------------------------------------------AGCCAAAGCCATTCTTATTTTGGTTTCTACATTTATTGTCATATATTCAGGCAGAACAGTGTAAAAATGATTACCAAAGTTGAGCCTATTA----TTTAGATTTTGAT----------AGTATGTGTG----------------T------------------ATA--------------TATGTATATAtttgagaaggagt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16879402 295 - 229590362 CCTTCTGGACTCCCTAGTACAA-TTCATCAATTTCATA--------------TTCTCTCTCTCTCCTCTCATAGGTATATAGTATA-----TTTTTTTTTGATGACTGGCTCAAGAATTTTAAGATG---------GGTTCTGATCCTGTTTAG----------------------------------------------------------------------------------------------CTGGAAGTATTTTCAAGA------------------------------------------------GAGCCAAAGCCATTCTTATTTTGGCTTCTACATTTATTGTCATATATTCAGGCAGGACAGTGTAAAAATGATTACCAAAGTTGAACCTATTA----TTTAGATTTTGAT----------tgtgtgtgtg----------------tgtgt--------gtgtgtgtg--------------tgtgtgtatgtttgggaaggagt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223641628 306 - 227556264 CCTTCTGGACTCCCTAGTACAA-TTCATCAATTTCATA--------------TTCTCTCTCTCTCCTCtcataggtatatagtata----ttttttttttgatgactggctcaagaattttaagatg---------ggttctgaacctgtttag----------------------------------------------------------------------------------------------ctggaagtattttcaaga------------------------------------------------gagccaaagccattcttattttggcttctacatttattgtcatatattcaggcaggacagtgtaaaaatgattaccaaagttgaacctatta----TTTAGATTTTGATtgtgtgtgtgtgtgtgtgtg----------------tgtgt--------gtgtgtgtg--------------tgtgtgtATGtttgggaaggagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16692992 314 - 220367699 CCTTCTGGACTCCCTAGTACAA-TTCATCAgtttcata--------------ttctctctctctcctctcataggtatgtagtata----tatattttttgatgacTGGCTCAAGAATTTTAAGATG---------GGTTCTGATCCTGTTTAG----------------------------------------------------------------------------------------------CTGGAAGTATTTTCAAGA------------------------------------------------GAGCCAAAGCCATTCTTATTTTGGCTTCTACATTTATTGTCATATATTCAGGCAGGACAGTGTAAAAATGATTACCAAAGTTGAACCTATTA----TTTAGattttgattgtgtgtgtgtgtgtgtgtg----------------tgtgt--------gtgtgtgtg------tatatatatatatatatgtttgggaaggagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82491120 330 + 85787240 CCTTCTGGACTCCCTAGCACAA-TTCATCAATTTCATA--------------TTCTCTCTCTTTCCTCtcataggtatatagtatg----tattttttttgatgactggctcaagaattttaaaatg---------ggttctgatcctgtttag----------------------------------------------------------------------------------------------ctggaagcattttcaaga------------------------------------------------gagccaaagccattcttattttggcttctacatttattgtcatatattcaggccggacagtgtaaaaATGGCTACCAGAGTTGAAGCTATTA----TTTAGATTTTGATAgtgtatgtgtgtgtgtgtgtgtatatacatgtatatgtgt--------gtgtgtgtg------tatgtgtatatatatatatttgagaaggagt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14172300 276 - 49578535 CCTTCTGGACTCCCTAGTACAATTTCATCAGTTTCATA------------------CTCTCTCTCCCCTCGTAGGTATATAGTATA----CAGTT----------------------------GTTG---------GGTTCTGATCCTGTTTAA----------------------------------------------------------------------------------------------CTGGAAGCATTTTCAAGA------------------------------------------------GAGCCAAAGCCATTCTTATGTTGGCTTCTACATTTATCGTTACATATTCAAGCAGGACAGCATAAAAGTGATTACGAAAGCTGAGCATATTA----ATCAGATTTTGAT----------TTCATATATA----------------TTTGG--------Ggagagagagagagagagagagagacagagaca---gagacagagt i calJac3.chr19 C 0 C 0 s mm10.chr1 178763897 471 + 195471971 CCTTCT-GCTTTCCAAACAAAG-CTCAT-ATCTCCATC-------------TTTCTCTCTCTCCCCTCTTAAATGTATATA-TATAATGCTAGACTTGCTCCTGCTTAGCTGGAGGAACAAGAGGTGTCgctcagtggtcatgagcttgtttgggacgtaccaggtcctcagttacatctctgtctttgcaaaaggaaaaagaaaaatagaaagaaaggaaaagaaaagaagaaattaaggcaGAGCCCTGACATTGTTTTCTAGATGTATTGTTAAATTGAAAATGCCTTGTATTGTTTCCCAAATGTATGGTGACACTGAGAAATTCTTCTATTGTTTTCTCAATGTATTGTTCTGTATTCAATCAGGACAGTATACAAAAATATGACTAACTCAAGACTATTCCACTTCTCACTGTTAATCTTAAACTCATGTGTCTACA----------------TGTATTGCATGTTGTATGTCTA--------------TGAGTACACACTGTGGGAGGGGT i mm10.chr1 C 0 I 151 e canFam3.chr7 36334168 280 + 80974532 I a score=210436.000000 s hg38.chr1_KI270759v1_alt 165462 75 + 425601 tttgccctgtcacctagactggagtacagtggcaccatctcggctcactgcaacctccacctcccaggttcgtgc s panTro4.chr1 224917871 75 + 228333871 tttgccctgtcacctagactggagtacagtggcaccatctcggctcactgcaacctccacctcccaggttcgtgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226275494 75 - 229942017 tttgctctgtcacctagactggagtgcagtggcgccatctcagctcactgcaacccccacgtcccaggttcgtgc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165682 75 - 143122389 tttgctctgtcacctagactggagtgcagtggcaccatctcggctcactgcaacctccagctctcaggttcgtgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16879697 75 - 229590362 tttgctctgtcacccagactggagtttagtggcactatcttggctcactgcaacctccacctcccagattcaagc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223641934 75 - 227556264 tttgctctgtcacccagactggagtttagtggcactatcttggctcactgcaacctccacctcccagattcaagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16693306 75 - 220367699 tttgctctgtcacccagactggagtttagtggcactatcttggctcactgcaacctccacctcccagattcaagc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82491450 75 + 85787240 ttcgctctgtcacccggaccggagtgcagtggcgctatcttggctcacggcaacctccacctcccagattcaagc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14172576 75 - 49578535 gtcgctctgttaccgagactgaagtgcagtggtgcaatctcggctcactgcaacctccacctcccaggttcaatc i calJac3.chr19 C 0 C 0 e mm10.chr1 178764368 151 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I a score=201460.000000 s hg38.chr1_KI270759v1_alt 165537 71 + 425601 agttctcc-tgccttggcctcccgagtagctgggattacaggcatgcaccaccacgcccagc--------taatttttat s panTro4.chr1 224917946 71 + 228333871 agttctcc-tgccttggcctcccgagtagctgggattacaggcatgcaccaccatgcccagc--------taatttttat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226275569 71 - 229942017 agttctcc-cgccttggcctctcgagtagctgggattacaggcacacaccaccatgcccagc--------taatttttat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165757 71 - 143122389 aattctcc-tgccttggcctcccgagtagctgggattacaggcatgcaccaccatgcccagc--------taatttttat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16879772 68 - 229590362 cattcacc-cgccttggcctcccgagtagctgggattacaggcatgcaccaccacgcctggc--------taattt---t i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223642009 68 - 227556264 cattcacc-cgccttggcctcccgagtagctgggattacaggcatgcaccaccacgcctggc--------taattt---t i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16693381 68 - 220367699 cattcacc-cgccttggcctcccgagtagctgggattacaggcatgcaccaccacgcctggc--------taattt---t i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82491525 68 + 85787240 aattctcc-ctccttggcctcccaagtagctgggactacaggcgtgcaccactatgcctggc--------taattt---t i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14172651 71 - 49578535 aattcttc-tgcctcaacctcctgagtagctgggattacaggcatgtaccaccgtgcctggc--------tgatttttat i calJac3.chr19 C 0 C 0 s mm10.chr1 178764519 78 + 195471971 ggttctccttgtctttccttcttccata-tagggattataggcacaca-caccatgtctagcttttctattaacttttat i mm10.chr1 I 151 I 185 e canFam3.chr7 36334168 280 + 80974532 I a score=322966.000000 s hg38.chr1_KI270759v1_alt 165608 110 + 425601 tgtatttatagtagagacggggtttcatcatgtcggccaggctggtcttgaactcctgacctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggtg s panTro4.chr1 224918017 110 + 228333871 tgtatttttagtagagacggggtttcatcatgtcggccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggtg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226275640 107 - 229942017 tgtatttttagtagagacggggtttcaccatgtcggccaggctggtcttgaactcctga---cacgtgatccacccgcctcggcctcccaaagtgcttggattacaggtg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165828 110 - 143122389 tgtatttttagtagagacggggtttcaccatgtgggccaggctggtcttgaactcctgacctcaggtgatctgctcgcctcagcctcccaaagtgctaggattataggca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16879840 110 - 229590362 tgtattttcagtagagatggggtttccccatgttggccaggctggtcttgaactcctgacctcaggtgatccacctgcctcagtctcctaaagtgctgggattacaggtg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223642077 110 - 227556264 tgtattttcagtagagatggggtttccccatgttggccaggctggtcttgaactcctgacctcaggtgatccacctgcctcagtctcctaaagtgctgggattacaggtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16693449 110 - 220367699 tgtattttcagtagagatggggtttccccatgttggccaggctggtcttgaactcctgacctcaggtgatccacctgcctcagtctcctaacgtactaggattacaggtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82491593 110 + 85787240 tgtatttttagtagagacggggtttccccatgttggccaggctggtcttgaactcctgacctcaggtgatccacctgcctcggtctcctaaagtgctgggattacaggtg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14172722 108 - 49578535 --tatttatagtagagatggggtttcaccacgttggccaggctggtcttgaacttctgacctctggtgatccacctgcctcagcctcctaaagtgctgggattacaggtg i calJac3.chr19 C 0 C 0 e mm10.chr1 178764597 185 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I a score=854644.000000 s hg38.chr1_KI270759v1_alt 165718 284 + 425601 tgagctaccacacctgg-ccTGATAGTTATGTTTTTAACTCTAGATGACTAAAAGAC---ACCTATAAAGAT------ATAGAAGTTAAGACAAAAGTCACAATTATGTTGACAACTGCTGTTACAGTGTT--TTCAATAT--ATTTATCCAATAGAAAAGTTTTATTTTACTGCACAATAATATGTTCTATTAAATTAATAAAAACGTACTCATGAGTGACTTCTTGTCATACAGATCTCTATAT---CTCTTAGAGCTGTATGTCGGCGTTTTCTCTCTGGATATATAATATACATATT s panTro4.chr1 224918127 286 + 228333871 tgagctaccacgcctgg-ccTGATAGTTATGTTTTTAACTCTAGATGACTAAAAGAC---ACCTATAAAGAT------ATAGAAGTTAAGACAAAAGTCACAATTATGTTGACAACTGCTGTTACAACAGCAGTTCAATAT--ATTTATCCAATAGAAAAGTTTTATTTTACTGTACAATAATATGTTCTATTAAATTAATAAAAACGTACTCATGAGTGACTTCTTGTCATACAGATCTCTATAT---CTCTTAGAGCTGTATGTCGGCGTTTTCTCTCTGGATATATAATATACATATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226275747 282 - 229942017 tgagctaccacgcctgg-ccTGATAGTTATGTTTTTAACTCTAGATGACTAAAAGAC---ACTTATAAAGAT------ATAGAAGTTAAGACAAAAGTCACAATTATGTTGACAGCTGCTGTTACAGTGTT--TTCAATAT--ATTTATCCAATAGAAAAGTTTTATTTTACTGCACAATAATATGTTCTATTAAATTAATAAAAACGTACTCATGAGTGACTTCTTGTCATACAGATCTC--TAT---CTCTTAGAGCTGTATGTCGGCATTTTCTCTCTGGATATATAATATACATATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140165938 285 - 143122389 tgagctaccacgcctgg-ccTGATAGTTATGTTTTTAACTCTAGATGACTAAAAGAC---ACCTATAAAGAT------ATAGAAGTTAAGACAAAAGTCATAATTATGTTGACAACTGCTGTTACAGTGTT--TTCAATATGCATTTATCCAATGGAAAC-TTTTATTTTACTGCACAATAATATGTTCTATTAAATTAATAAAAACGTACTCATGAGTGACTTCTTGTCATACAGATCTCTATAT---CTCTTAGAGCTGTATGTCAGCATTTTCTCTCTGGATATATAATATACATATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16879950 285 - 229590362 tgagctaccacgcccgg-tcTGATAGTTATGTTTTTAACTCTTGATGACTAAAAGAC---ACTTATAAAAAT------ATAGAAGTTAAGAC-AAAGTCACAATTGTGTTGAAAACTACTGTTACAGTGTT--TTCAATATATATTTATCTGATGGAAAAGTTTTATTTTACTGTACAATAATATGTTCTATTAAATTAATGAAAACATACTCATGAGTGACTTCTTGTCATACACATCTCTATAT---CTCTTAGAGCTGTATGTCGGCATTTTCTCTCTGGATGTATAATATTCGTATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223642187 285 - 227556264 tgagctaccacgcccgg-tcTGATAGTTATGTTTTTAACTCTTAATGACTAAAAGAC---ACTTATAAAAAT------ATAGAAGTTAAGAC-AAAGTCACAATTGTGTTGAAAACTGCTGTTACAGTGTT--TTCAATATATATTTATCTGATGGAAAAGTTTTATTTTACTGTACAATAATATGTTCTATTAAATTAATGAAAACATACTCATGAGTGACTTCTTGTCATACACATCTCTATAT---CTCTTAGAGCTGTATGTCGGCATTTTCTCTCTGGATGTATAATATTCGTATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16693559 285 - 220367699 tgagctaccacgcccgg-tcTGATAGTTATGTTTTTAACTCTTGATGACTAAAAGAc---acttataaaaat------atagaagttaAGAC-AAAGTCACAATTGTGTTGAAAACTGCTGTTACAgtgtt--ttcaatatatatttatctgatggaaaagttttattttactgtacAATAATATGTtctattaaattaatgaaaacgTACTCATGAGTGACTTCTTGTCATACACATCTCTATAT---CTCTTAGAGCTGTATGTCGGCATTTTCTCTCTGGATGTATAATATTCGTATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82491703 285 + 85787240 tgagctaccatgcccgg-tctgatagttatgtTTTTAACTCTTGATGACTAAAAGAC---ACCTATAAAAAT------ATAGAAGTTAAGAC-AAAGTCACAATTGTGTTGAAAACTGCTGTTACAATGTT--TTCAATATGTATTTATCCGATGGAAAAGTTTTATTTTACCATACAATAATATGTTCTATTAAATTAATGAAAACGTACTCATGAGTGACTTCTTGTCATACACATCTCTATAT---CTCTTAGAGCTGCATGTCGGCATTTTCTCTCTGGATGTATAATATTCGTATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14172830 282 - 49578535 tgagccaccatgcccAT-CCCGATAGCTATATTTTTAACTCTTGATGACTAAAAGAC---ACCTATAAAGGT------ACAGAAGTTAAGACAAAAGTTGCAGTTATGTAGATGACTGCTGTCACAGAGTT--TTCAGTGTGTATTTATCCAACAGAAAAG----GTTTTACTGTGCAATAATATGTACTATTAAATTAATAAAATCATGTTCTTTAGTGACCTCTTGTCATTCACATCTCTAGAT---CTCTTAGAGCTGTTTGTAGGCATTTTCTCTCTGGATATATGATATTCACATT i calJac3.chr19 C 0 I 767 s mm10.chr1 178764782 287 + 195471971 tgagccattgccccagtcccTGACTGTCA--TTTTAGATTCTTGATTGGCAGTGGACTTTGCTAATAAAAGTCAAGGAATAGAAGTCAAGTCAATAGGGACAGCTGTGTTGACAAATATTATTACTGTGT---TTCAATGTATATCTTGTTAACTCGA---TTTTATTTTCCTGCACTGAAATATGTTCTCCCATGGAAGACAGCCTGTATTTATTAGTGACTTCCTGTCTTGGCAGCCCCCCTGTTGCCTCATGGGGGGGT-----GGC-TTTTCTCTCAGCATATGTAATATTCACATT i mm10.chr1 I 185 C 0 e canFam3.chr7 36334168 280 + 80974532 I a score=190716.000000 s hg38.chr1_KI270759v1_alt 166002 85 + 425601 --------AATCAATT-------cattcattgagcctgtgc-------ttggcatgattccaggtgcttcagtataatagagcaataaagacaagccccctgctctc s panTro4.chr1 224918413 81 + 228333871 --------AAT----T-------Cattcattgagcctgtgc-------ttggcatgattccaggtgcttcagtataatagagcaataaagacaagccccctgctctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226276029 85 - 229942017 --------AATCAATT-------cattcattgagcctgtgc-------ttggcatgattccaggtgcttcagtataatagagcaataaagacaagccccctgctctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140166223 85 - 143122389 --------AATCAATT-------Cattcattgcgcctgtgc-------ttggcatgattccaggtgcttcagtataatacagcaataaagacaagccccctgctctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16880235 81 - 229590362 --------AATCAatt-------cattca----gcctgtgc-------ttggcatggttccaggtgcttgagtatatcagagcaataaagacgcgccccctgctctc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223642472 81 - 227556264 --------AATCAatt-------cattca----gcctgtgc-------ttggcatggttccaggtgcttgagtatatcagagcaataaagacgcgccccctgctctc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16693844 81 - 220367699 --------AATCAATT-------CATTCA----GCCTGTGC-------TTGGCATGGTTCCAGGTGCTTGAGTATATCAGAGCAATAAAGACGCGCCCCCTGCTctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82491988 77 + 85787240 ------------Aatt-------cattca----gcctgtgc-------ttggcatggttccaggtgcttgagtatatcagagcaataaagacgcgccccctgctctc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178765069 106 + 195471971 GATTAattaatcgattagacaagtgtttattgagcgtgtgccttgtgtttggcataaatccaggtgctggagtgcag-agggacatgaacagcagggccctgcactc i mm10.chr1 C 0 I 276 e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14173112 767 - 49578535 I a score=717374.000000 s hg38.chr1_KI270759v1_alt 166087 309 + 425601 ttagatc----------ttactttttttttttt------ttgaaatggaattttgctcttgtctcccaggctggagtgcaatggcacgatctcggctcactgcaacctccacctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgagattacaggcgcccgccaccacacccagctagtttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcaagctcctgacctcagatgatccgcccacctcggcttctcaaagtgctgggattacaggcgtgagccactgcgcccagtca s panTro4.chr1 224918494 307 + 228333871 ttagatc----------ttactttttttttttt--------gaaatggaattttgctcttgtctcccaggctggagtgcaatggcatgatctcggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgagattacaggcgcccgccaccacacccagctagtttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgagctcctgacctcagatgatccgcccacctcggcttctcaaagtgctgggattacaggcgtgagccactgcgcccagtca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226276114 311 - 229942017 ttagatc----------ttactttttttttttt----ttttgagatggaattttgctcttgtctcccaggctggagtgcaatggcgcgatctcagctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcgcccaccaccacacccagctagtttttgtatttttagcagagatggggtttcaccatgttggccagggtggtctcgagcgcctgacctcaaatgatccgcccacctcggcttctcaaagtgctgggattacaggtgtgagccaccgcacctggtca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140166308 315 - 143122389 ttagatc----------ttaattttttttttttttttttttgagatggaattttgctcttgtctcctaggccggaatgcaatggcacgatctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcgcccaccaccacacccagctagtttttgtacttttagtagagatggggtttcaccatgatggccaggctgatctcgagctcctgacctcgggtgatccgcccacctcggcctctcaaagtgttgggattacaggcgtgagccactgcgcctggtca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16880316 302 - 229590362 ttagatc------------------tttttttt----ttttgagatggagttttgctcttgtctcccaggctggagcgcaat-gcatgatctcggctcactgcaatctccgcctcccgggctcaagcaattctcctgcctcagcctcccgagtagccgggattccaggggcccgccaccacaaccagctagtttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgagctcctgacctcagatgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagtca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223642553 315 - 227556264 ttagatc-----ttttttttttttttttttttt----ttttgagatggagttttgctcttgtctcccaggctggagtgcaat-gcatgatctcggctcactgcaatctccacctcccgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtgcccgacaccacaaccagctagtttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgagctcctgacctcagatgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagtca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16693925 310 - 220367699 ttagatc----------tttttttttttttttt----tttttagatggagttttgctcttgtctcccaagctggagtgcaat-gcacgatctcggctcactgcaatctccgcctcccgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtgcccgacaccacaaccagctagtttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgagctcctgacctcaggtgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagtca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82492065 320 + 85787240 ttagatctttttttttttttttttttttttttt----tgttgagatggagttttgctcttgtctcccaggctggagtgcaat-gcacgatctcggctcactgcaatctctgcctgccgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcccgacaccacaaccagctggtttttgtatttttagtagagatggagtttcaccatgttggccaggctggtcttgagctcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagtca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178765175 276 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14173112 767 - 49578535 I a score=1472589.000000 s hg38.chr1_KI270759v1_alt 166396 531 + 425601 gatcttacattctgatagagggatatagacaataaacaagccagaaaatacctgccagtcaaaaagctgtgatgggaACCAGCCAGGCAAAGATCTAGAGGGAGAGCACC--AGGCCTGTCTCCACTTATGTGAGACGTACAGAAACACACAGCGCCTTGCCCGTGGGAGGTTCTCACCACGTATTTATTGAG-GAATAAATGAGTGAATGGATGTATTCATTGGCCTGCTTGTAAAACCTTCACCAGTGGACTCTTGGCTTTTAGAACTTTATTACAGGTTGAGTAATATCTGAaatatcccttattcagaacacttgaaaccagaggtgtcttggattttgaattttggggggtttggaaatatttctactgtacttatatttatcaagtgagcaccctaaaatgaaaatctgaagtcctgaatgctgcagtgagcattctctttgagcatcatgctggtgctt-aaaaagttttggattctggagcattttgggttagggatcttcAACCGGTATGCTAACAATAGTGATCT s panTro4.chr1 224918801 532 + 228333871 gatcttacgttctgatagagggatatagacaataaacaagtCAGAAAACACCTGCCAGTCAAAAAGCTGTGATGGGAACCAGCCAGGCAGAGATCTAGAGGGAGAGCACC-CAGGCCTATCTCCACTTACGTGAGACGTACATAAACACACGGCGCCTTGCCCGTGGGAGGTTCTCACCACGTATTTATTGAG-GAATAAATGAGTGAATGGATGTATTCATTGGCCTGCTTGTGAAACCTTCACCAGTGGACTCTTGGCTTTTAGAACTTTATTACAGGTTGAGTAATATCTGAaatatcccttattcagaacacttgaaaccagaggtgtcttggattttgaattttgaggggtttggaaatatttctactgtacttatatttatcaggtgagcaccctaaaatgaaaatctgaagtcctgaatgctgcggtgagcattctctttgagcatcatgttggtgctt-aaaaagttttggattctggagcattttgggttagggatcttcAACCGGTATGCTAATAATAGTGAGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226276425 532 - 229942017 gatcttacattctgatagagggatatagacaataaataaaccagaaaatacctgccagtcaaaaagctgtgatgggaactagccaggcaaagatctagagggagagcacc-caggcctgtctCCACTTATGTGAGATGTACATAAACACACAGCGCCTTGCCTGTGGGAGGTTCTCACCACGTATTTATTGAG-GAATAAATGAGTGAATGGATGTATTCATTGGTCTGCTTGTAAAACCTTCACCAGTGGACTCTTGGCTCTTAGAACTTTATTAcaggttgagtaatatctgaaatgtcccttattcagaacgcttgaaaccagaggtgtcttggattttgaattttggggggtttggaaatatttatactgtacttatatttatcaggtgaacatcctaaaatgaaaatctgaagtcctgaatgctgcagtgagcattctctttgagcatcatgttggtgctt-aaaaagttttggattttggagcatttgggattagggatcttcAACCGGTATGCTAATAGTAGTGATCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140166623 518 - 143122389 gatcttgcattctgatagagggatatagacaataaataaaCCAGAAAATACCTGCCAGTCAAAAAGCTGTGATGGGAACCAGCCAGGCAGAGATCTAGAGGGAGAGCACC-CAGGCCTGTCTCCACTTCCGTGAGATGTACATAAACACACAGCGCCTTGCCCGTGGGAGGTTCTCACCACCTATTTATTGAG-GAATAAATGAGTGAATGGATGTATTCATTGGCCTGCTTGTAAAACCTTCATCAGTGGACCCCTGGCTCTTAGAACTTTATTACAGGTTGAGTAATATCTGAaatatcccttattcagaacacttgaaaccagagatgtcttggattttgaattttgggggctttgg-------------ggggttatatttatcaggtgagcatcctaaaatgaaaatct-aagtcctgaatactgcagtgagcattctctttcagcatcatgttggtgctc-aaaaagttttggattttggagcattttggattAGGGAACTTCAACCTGTATGCTAATAATAGTGATCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16880618 521 - 229590362 gatcttatattttgatagaggaatatagataataaataaaccagaaaatacctgccagtcaaaaagctgtgatgggaaccagccaggCAAAGATCTAGAGGGAGAGCACCCCAGGCCTGTCTCCACTTATGTGAGATGTACATAAACGCacagcgccttgtccgtgggaggctctcaccacatatttattgag-gaataaatGAGTGAATGGATGTATTCATGGGCCTGCTTGTAAAACCTTTACCAGTGGACTCTTGGCTCTTAGAACTTTATTACAGGTTGAGTAATATCTGAaatatccgttattcagaatgcttgaaaccagaggtgtcttggattttgaatttttgggtggttggaaatatttatactatacttatatatatcaggtgagcatcctgaaatgaaaatctgaagtccagagtgctgcagtgggcattctctttgagcttcatgttggtgctc-aaaaagttttggattttggagcgttttggattagggatcttcagCCTGTATACTAA------------ i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223642868 521 - 227556264 gatcttatattttgatagaggaatatagataataaataaaccagaaaatacctgccagtcaaaaagctgtgatgggaaccagccaggCAAAGATCTAGAGGGAGAGCACCCCAGGCCTGTCTCCACTTATGTGAGATGTACATAAACGCacagcgccttgtccgtgggaggctctcaccacatatttattgag-gaataaatGAGTGAATGGATGTATTCATGGGCCTGCTTGTAAAACCTTTACCAGTGGACTCTTGGCTCTTAGAACTTTGTTACAGGTTGAGTAATATCTGAaatatccgttattcagaatgcttgaaaccagaggtgtcttggattttgaatttttgggtggttggaaatatttatactatacttatatatatcaggtgagcatcctgaaatgaaaatctgaagtccagagtgctgcagtgggcattctctttgagcttcatgttggtgctc-aaaaagttttggattttggagcgttttggattagggatcttcAACCTGTATACTAA------------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16694235 519 - 220367699 gaTCTTATATTCTGATACAGGAATATAGACaataaataaaccagaaaataccTGCTAGTCAAAAAGCTATGATGGGAACCAGCCAGGCAAAGATCTAGAGGGAGAGCAACCCAGGCCTATCTCCACTTA--TGAGATGTACATAAACACACAGCACCTTGCCTGTGGGAGGTTCTCACCATATATTTACtgag-gaataaatgagtgaatggatgtaTTCATTGGCCTGCTTGTAAAACCTTCACTAGTGGACTCTTGGCTCTTAGAACTTTATTACAGGTTGAGTAATATCTGAAATATCCTTTATTCAGAATGCTTGAAACCAGAGGTGtcttggattttgaatttttgggtGGTTGGAAATACTTATACTATACTTATATTTATCAGGTGAGCATCCTGAAATGAAAATCTAAAGTCCAGAGTGCTGCAGTGGGCATTCTCTTTGAGcttcatgttggtgctc-aaaaagttttggattttggagcattttggattagGGATCTTCAACCTGTATACTAA------------ i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82492385 521 + 85787240 gatcttatattctgatagagggatatagacaataaataaaccggaaaatacctgccagtcaaaaagctatgatgggaaccagccaggCAAAGATCTAGAGGGAGAGCACCCCAGGCCTGTCTCCACTTATGTGAGATGTACATAAACGCTcagcgccttgcccgtgggaggttctcaccacatatttattgag-gaataaatgaatGAATGGATGTATTCATTGGCCTGCTTGTAAAACCTTCACTAGTGGACTCTTGACTCTTAGAACTTTATTACAGGTTGAGTAATATCTGAaatatccgttattcagaatgcttgaaaccagaggtgtcttggattttgaatttcggtggggttggaaatatttatactatatttatatttatcaggtgagcatcctgaaatgaaaatctgaagtccagagtgctgcagtgggcattctctttgagcttcatgttggtgctc-aaaaagttttggattttggagtgttttgggttagggatcttcAACCTGTATACTAA------------ i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14173879 526 - 49578535 gatcttacattctcatagaggggtatagacagtaggtaaaccagaaaatgcctgacagtcaaaaagctgtgatgggagccagccaggCAAAGATCTAGAGGGCAAGCATCTCAGG-ATGTCTCCACTTGTGCAAAATGTACATAGACTCACAGCGCCTTGCCCCTGGCAGGGTCTCCTCATGTATTTACTGAGTGAATAAATGAGTGAATGGATATATTCATTGGCTGGCTTGTAAAACCTTCATCAGCGGACTGTTGGCTCTTAGAATTTCATTACAGGTTGAATAATATCTGAaatatcccttattcagaatgctcgaaaccaggggtgtcttgga-tttgaattttggggggttttgaagtgtttat------tttagatttatcaggtgagcatcct-aaatgaaaatctggagtcccaaatgctccagtgagcattctctttgagcattatggtggtgctcaaaaaagtttcagattgtgggtcattttggattAGAGACACTCCACCTGCACACTGCCAGTCGTGACCT i calJac3.chr19 I 767 C 0 e mm10.chr1 178765175 276 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I a score=1080055.000000 s hg38.chr1_KI270759v1_alt 166927 367 + 425601 TATGTAGTATTTTCCCTCCAAAGAGATTTGAGAGAGAAATAAGTGGCTGCCGTGGTTGGCCGTCTTTCTCT-GGCTCACTTCACCTTGTTGCCCTCGGATAACTCCAGTGaactccttcttacttttcaaggccatggctcttccaagcaacctccctgagccccttgggctgggtcaggagggttccc-caggcctgcatggacctacaatgtgctactgaaatgatcatttatgtgtctgtctctttctctaaacagtgggctccCCCA--GACTGGGCACAAAGTTATTTAC----CTAATGTAGCCAAG-AGGTAGGTGTGCAAGAATTGTTTTCTGTTGAGATGAAAATCACCAAGCCTGGTCATTTGCTT s panTro4.chr1 224919333 367 + 228333871 TATGTAGTATTTTCCCTCCAAAGAGATTTGAGAGAGAAGTAAGTGGCTGCCGTGGTTGGCCGTCTTTCTCT-GGCTCACTTCACCTTGTTGCCCTCGGATAACTCCAGTGaactccttcttacttttcaaggccatggctcttccaagcaacctccctgagccccttgggctgggtcaggagggttccc-cagccctgcatggacctacaatgtgctactgaaatgatcatttatgtgtctgtctctttctctaaacagtgggctcctcca--gactgggcacaaagttatttac----ctAATGTAGCCAAG-AGGTAGGTGTGCAAGAATTGTTTTCTGTTGAGATGAAAATCACCAAGCCTGGTCATTTGCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226276957 366 - 229942017 TATGTAGTACTTTCCCTCTAAAGAGA-CTGAGAGAGAATTAAGTGGCTGCCGTGGTTGGCCGTCTTTCTCT-GGCTCActtcaccttgttgcccttggataactccagtgaactccttcttacttttcaaggccatggctcttccaagcaacctccctgagccccttgggctgggtcaggagggttccc-cagccttgcatggacctacagtgtgctactgaaatgatcatttatgtgtctgtctctctctctaaacagtgggctcctcca--ggctgggcacAAAGTTATTTCC----CTAATGTAGCCAAG-AGGTAGGTGTGCAAGAACTGTTTTCTGTTGAGATGAAAATCACCAAGCCTGGCCATTTGCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140167141 367 - 143122389 TATGTAGTACTTTCCCTCCAAAGAGATTTGAGAGAGAAGTAAGTGGCTGCCGTGGTTGGCCGTCTTTCTCT-GGCTCATTTCACCTTGTTGCCCTTGGATAACTCCAGTGaactccttcttacttttcaaggccatggctcttccaagcaacctccctgagccccttgggctgggtcaggagggttccc-cagccctgcatggacctacaatgtgctactgaaatgatcatttatgtgtctgtctctttctctgaacagtgggctcctcca--gactgggcacaaagttatttac----ctAATGTAGCCAAG-AGGTAGGTGTGCAAGAACTGTTTTCTGTTGAGATGAAAATCACCAAGCCTGGCCATTTGCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16881139 368 - 229590362 TATGTAGTACTTTCCCTCCAAAGAGATTTGAGGGAGAAGTAAGTGGCTGCCATAGTTGgctctttttccctgggctcacttcaccctcttgcgcttggataacgccagtgaactccttcttacttttcaaggctgtaactcttccaagcaacctccctgag-cccttggactgggtcaggagggttcccttggccctgcaagaacctacaatgtgttactgaaatgatcatttatgtgtctgtctctttctctaaacagtgggctcctcaa--gactgggcacaaagttatttac----caaatgtaaccaag-aggtaggtgtgcaaaaactgttttctgttgagatgaaAATCACCAAGCCTGGCCATTTGCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223643389 368 - 227556264 TATGTAGTACTTTCCCTCCAAAGAGATTTGAGGGAGAAGTAAGTGGCTGCCATAGTTGgctctttttccctgggctcacttcaccctcttgcgcttggataactccagtgaactccttcttacttttcaaggccgtaactcttccaagcaacctccctgag-cccttggactgggtcaggagggttcccttggccctgcaagaacctacaatgtgttactgaaatgatcatttatgtgtctgtctctttctctaaacagtggactcctcaa--gactgggCACAAAGTTATTTAC----CAAATGTAACCAAG-AGGTAGGTGTGCAAAAACTGTTTTCTGTTGAGATGAAAATCACCAAGCCTGGCCATTTGCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16694754 365 - 220367699 TATGTAGTACTTTCCCTCCAAAGAGATTTGAGAGAGAAGTAAGTGGCTGCCATAGTTGGCTCTTTTTCCCTGGGCTCACTTCACCCTCTTGCCCTTGGATAACTCCAGTGAACTC---CTTACTTTTCAAGGCCATGGCTCTTCTAAGCAACCTCCCTGAG-CCCTTGGACTGGGTCAGGAGGGTTCCCTTGGCCCTGCAAGAACCTACAATGTGCTACTGAAATGATCATTTATGTGTCTGGCTCTTTCTCTAAGCAGTGGGCTCCTCAA--GACTGGGCACAAAGTTATTTAC----CAAAGGTAACCAAG-AGGTAGGTGTGCAAAAACTGTTTTCTGTTGAGATGAAAATCACCAAGCCTGGCCATTTCCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82492906 365 + 85787240 TATGTAGTACTTTCCCTCCAAAGAGATTTGAGAGAGAAGTAAGTGGCCGCCATAGTTGgctctttttccctgggctcacttcaccctcttgcccttggataactccagtgaactt---cttacttttcaaggccatgactcttccaagcaacctccctgag-cccttggactgggtcaggagggttcccttggccctgcaaggacctacaatgtgctactgaaatgatcatttatgtatctgtctctttctctaaacagtgggctccttga--gactgggcacaaagtTATTTAC----CAAATGTAACCAAG-AGGTAGGTGTGCAAAAACTGTTTTCTGTTGAGATGAAAATCACCAAGCCTGGCCATTTGCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14174405 350 - 49578535 TG-GCAGTA-TTTCCCGCCAAAGCGATTTGATGGAGAAGTTAGTGACTGCCTTCGTGG--CAGCTTTCTCTGGGCTCACTGCACcctcttgcccttggatcgctccactcaactccttcttacttttcaacgtcatggctcttccaagccacctccctgagctcctggggctggatcaggagggtttccctgg------------ctacagtgtgctactgaagtgatcagttatgtgcctgtctctttctctaaacagtgagctcctcca--gactgggcacgagggtattcac----ctgatgtagccAAG-GGGTAGGTGTGCGA-AACTGCTTTCTGTCGAGATGAAAATCTCCAAGCCTGGCCGTCTGC-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178765451 308 + 195471971 TATGTAGCATTTTCCTTTCA-------------------CAAGTGGCTGTCTTAGGTGGTCTTGTTTCTCTGGTGTCCCTTCATCCTCCTGC-CTCAGATAAATCAGCTGC-------CAGTCCCTTCAAGGTGATGGCTTTTTCAGGAGCGCTTCCTAAGCCCCTTG------------------------------TGTGGGCCTTCCATACTCTGCGGATATTATTGTTTAGGTGTCTATGTCTTTGTCTAAAT-GAAGCCTCCTCCATGGTCTTCACACAGAAATATATGCCTCTCTGTTGTGGCCAAACACATAG---------AACTGTTTGCTGT-GAAACAGAAGTCACCATGCCTGGCCATTTGCCT i mm10.chr1 I 276 I 1597 e canFam3.chr7 36334168 280 + 80974532 I a score=869192.000000 s hg38.chr1_KI270759v1_alt 167294 310 + 425601 TCTGTGTAGACAGCAGTGT-GTTGTTCACTTAGGACTCTGCTCTCTGTCTCGTGCAACTTACCCTTTATTTAGGGAAAATGAACAATCTGT-AAACAATAAGAGAACACTGGCAAATCAATACAGTCAAGACCTGTGGGAAAATGTAGAGGTGTCAAGAGTAAGAGAATAAGCTGAGGGAGCAGGTGTGGATCACCATGGTCTCCTTTGACTTGCTCAATAAAGACCCTCTGACCAAAGGTTAGCTGCAAACGCCTTTGTTTTGGAGGGCTAGTATGCAGTGGTTTCGTGATGTGTCTTTTATATGGTCTCA s panTro4.chr1 224919700 310 + 228333871 TCTGTGTAGACAGCAGTGT-GTTGTTCACTTAGGACTCTGCTCTCTTTCTCGTGCACCTTACCCTTTATTTAGGGAAAATGAACAATCTGT-AAACAATAAGAGAACACTGGCAAATCAATACAGTCAAGACCTGTGGGAAAATGTAGAGGTGTCAAGAGTAAGAGAATAAGCTGAGGGAGCAGGTGTGGATCACCATGGTCTCCTTTGACTTGCTCAATAAAGACCCTCTGACCAAAGGTTAGCTGCAAACGCCTTTGTTTCGGAGGGCTAGTATGCAGTGGTTTCGTGATGTGTCTTTTATATGGTCTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226277323 308 - 229942017 TC--TGTAGACAGCAGTAT-GTTGTTCCCTTAGGACTCTGCTCCCTGTCTCGTGCAACTTACCCTTTATTTAGGGAAAATGAACAATCTGT-AAACAATAAGAGAACACTGGCAAATCAATACAGTCAAGACCTGTGGGAAAATGTAGAGGTGTCAAGAGTAAGAGAATAAGCTGAGGGAGCAGGTGTGGATCACCATGGTCTCCTTTGACTTGCTCAATAAAGACCCTCTGACCAAATGTTAGATGCAAACCCCTTTGTTTTGGAGGGCTAGTATGCAGTGGTTTCGTGATGTGTCTTTTATATGGTCTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140167508 310 - 143122389 TCTGTGTAGACAGCAGTGT-GTTGTTCCCTTAGGACTCTGCTCCCTGTCTCGTGCAACTTACCCTTTATTTAGGGAAAATGAACAATCTGT-AAACAATAAGAGAACATTGGCAAATCATTACAGTCAAGACCTGTTGGAAAATGTAGAGTTGTCAGGAGTAAGAGAATAAGCTGAGGGAGCAGGTGTGGATCACCATGGTCTGCTTTGATTTGCTCAATAAAGACCCTCTGACTAAAGGTTAGCTGTGAACGCCTTTGTTTTGGAGGGCTAGTATGCAGCGGTTTCGTGATGTGTCTTTTATATGGTCTCG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16881507 311 - 229590362 CCTGTGTAGAAAGTAGTGT-GTCGTTCCCTTAGGACTCTGCtccctgtcttgtgcaacttaccctttatttagggaaaatgaacaatctgtaaaacaataagagaacactggcaaatcaatacaggcaagacctgtggggaaatgcggaggtgtcaagagtaagagactgggctgagggagcaggtatgGATCACCGTGGTCTCCTTTGACTTGCTCAATAAAGGCCCTCTGACTGAAGGTTAGCTGCAAACCCCTTTGTTTTGGAGGGCTGATATGCAGTGTTTTCATGATGTGTCTTTTATATGGTCTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223643757 311 - 227556264 CCTGTGTAGAAAGTAGTGT-GTCGTTCCCTTAGGACTCTGCtccctgtcttgtgcaacttaccctttatttagggaaaatgaacaatctgtaaaacaataagagaacactggcaaatcaatacaggcaagacctgtggggaaatgtggaggtgtcaagagtaagagactgggctgagggagcaggtgtgGATCACCGTGGTCTCCTTTGACTTGCTCAATAAAGGCCCTCTGACCGAAGGTTAGCTGCAAACCCCTTTGTTTTGGAGGGCTGGTATGCAGTGTTTTCATGATGTGTCTTTTATATGGTCTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16695119 312 - 220367699 CCTGTGTAGAAAGTAGTGTAGAAAGTCCCTTAGGACTCTGCTCCCTGTCTTGTGCAACTTACCCTTTATTTAGGGAAAATGAACAATCTGTAAAACAATAAGAGAACACTGACAAATCAATACGGGCAAGACCTGTGGGAAAATGCAGAGGTGTCAAGAGTAAGAGACTAGGCTGAGAGAGCAGGTGTGGATCACCGTGGTCTCCTTTGACTTGCTCAATAAAGACCCCCTGACCGAAGGTTAGCTGCAAACCCCTTTGTTTTGGAGGGCTGGTATGCATTGTTTTCATGATGTGTCTTTTATATGGTCTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82493271 311 + 85787240 CCTGTGTAGACAGCAATGT-GTTGTTCCCTTAGGACTCTGCtccctgtcttgtgcaacttaccctttatttagggaaaatgaacaatctgtaaaacaataagagaacattggcaaatcaatatggtcaagacctgtgggaaaatgcggaggtgtcaagagtaagagactaggctgagggagcaggtgtgGATCACCGTGGTCTCCTTTGACTTGCTCAATAAAGACCCTCTGACCGAAGGTTAGCTGCAAACCCCTTTGTTTTGGAGGGCTGGTATGCAGTGTTTTCATGATGTGTCTTTTATATGGTCTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14174755 273 - 49578535 --------------------GCTGTTCCCTGAGGACTCAGCTCCCTG--TGGTGCAACCTACTCTTTGTTTAGGGAAACTGAACCATCTGT-AAACAAAAAGAGCACATTGGCAAATCAATACGGTCAAGACCTGTGGGAAAATG----------------AAGAGAGGAGGCTGAGTGAGCAGGGGTGGGTCACCATGGTCTCCTTCAACTTGCCCAGTAAAGGCCCTCTGACCAAAGGGTAGATGCAAACCCCTTTGTTTTGGAGGGCTAGCATGCAGTGGTTTCGTGTTGAGTCTTTTATATGATCTTA i calJac3.chr19 C 0 I 317 e mm10.chr1 178765759 1597 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I a score=1072600.000000 s hg38.chr1_KI270759v1_alt 167604 384 + 425601 TGGTTTTCAATTTCTTAATTGATGTTTCTGATTTACCTGAAAGCTTTAAATGTTCATGATCTTGGCTTGGTACACATTAGACATTAAGGTTTACAACCGATGCCTGTCATTGCCATTTGAATGTGTTGGTGACATTCCTGGTGTGGCAAGCTAGGCGAGTGTGCCCCCATCGACAAAAGAGGCTGAATTCTATATTCTGCACTATATGGACTGCCTTTCTCTTTCACTCACTTGCTTTTTAAATGACACAATTCATCCCATTCTTAATGGGGGTT-GGGGGagaaaggaagaaggaaacgaaagcaagcaaaagaaCC-ACTCAGTGCCCGCAACTGTTATTATGATCTTGGTATATAGCTCTAAATACTTTCAAAAATATACTTG s panTro4.chr1 224920010 383 + 228333871 TGGTTTTCAATTTCTTAATTGATGTTTCTGATTTACCTGAAAGCTTTAAATGTTCATGATCTTGGCTTGGTACACATTAGACATTAAGGTTTACAACC-ATGCCTGTCATTGCCATTTGAATGTGTTGGTGACATTCCTGGTGTGGCAAGCTAGGCCAGTGTGCCCCCATCGACAAAAGAGGCTGAATTCTATATTCTGCACTATATGGACTGTCTTTCTCTTTCACTCACTTGCTTTTTAAATGACACAATTCATCCCATTCTTAATGGGGGTC-GGGGGAGAAAAGAAGAAGGAAACGAAAGCAAGCAAAAAAACC-ACTCAATGCCCGCAACTGTTATTATTATCTTGGTATATCGCTCTAAATACTTTCAAAAATATACTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226277631 380 - 229942017 TGGTTTTCAATTTCTTAATTGATGTTTCTGATTTACCTGAAAGCTTTAAATGTTCATGATCTTGGCTTGGTACACATTAGACATTAAGGTTTACAACCAATGCCTGTCATTGCCATTTGAATGTGTTGGTGACATTCCTGGTGTGGCAAGCTAGGTGAGTGTG-CCCCATCAACAAAGGAGGCTGAATTCTATATTCTGCACTATATGGACTGTCTTTCTCTTTCACTCACTTGCTTTTTAAATGACACAATTCGTCCCATTCTTAGTGGGGGTCGGGGGGAGAAAGGAAGAAGGAAACGA----AAGCAAAAAAACC-ACTCAATGCCCACAACTGTTATTATTATCTTGGTATATAGCTCTAAATACTTTTAAAAATATACTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140167818 376 - 143122389 TGGTTTTCAATTTCTTAATTGATGTTTCTGATTTACCGGAAAGCTTTAAATGTTCATAATCTTGGCTTGGTACACATTAGACATTAAGGTTTACAACCAATGCCTGTCATTGCCATTTGAATGTGTCGGTGACATTCCTGGTGTGGCAAGCTAGGTGAGTGTG-CCCCATCAACAAAGGAGGCTGAGTTCTATATTCTGCACTATATGGACTGTCTTTCTCTTTCACTCACTTGCTTTTTAAATGACACAATTCATCCCATTCTTAAT--------GGGGGagaaaggaagaaggaaatgaaagcaagcaaaaaaACC-ACTCAATGCCCGCAACCGTGATTATTGTCTTGGTATATAGTTCTAAATACTTTTAAAAATAGACTTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16881818 385 - 229590362 TGGTTTTCAATTTCTTAATTGATGTTTCTCATTTACCCAAAAGCTTTAAATGTTCATCATCTTGGCATGGAACACAGTAGACATTAAGGTTTACAACCAATGTCTGTCATTGCCATCTGAATGTGTTGGTGACATTCCTGGTGTGGCAAGCTAGGTGGGTGTGCCCTCATCAACAAAGGAGGCTGAATTCTATATTCTGCACTGTAGGGACTGTCTTTCTCTTTCACTTGCTTGCTTTTTAAATGACACAATTCAT-CCATTCTTAATGGGAGTCAGGGGGAGAAAGGAAGAAGGAAACGAAAGCAAGCAGAAAAACCCACTCAATGCCCGCAACTGTTACTATTATCTTGGTGTAGAACTCTAAGTACTTTTTAAAATATACTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223644068 385 - 227556264 TGGTTTTCAATTTCTTAATTGATGTTTCTCATTTACCCAAAAGCTTTAAATGTTCATCATCTTGGCATGGAACACAGTAGACATTAAGGTTTACAACCAATGTCTGTCATTGCCATCTGAATGTGTTGGTGACATTCCTGGTGTGGCAAGCTAGGTGGGTGTGCCCTCATCAACAAAGGAGGCTGAATTCTATATTCTGCACTGTAGGGACTGTCTTTCTCTTTCACTTGCTTGCTTTTTAAATGACACAATTCAT-CCATTCTTAATGGGAGTCAGGGGGAGAAAGGAAGAAGGAAACGAAAGGAAGCAGAAAAACCCACTCAATGCCTGCAACTGTTACTATTATCTTGGTGTAGAACTCCAAGTACTTTTTAAAATATACTTG i macFas5.chr1 C 0 I 312 s papAnu2.chr1 16695431 385 - 220367699 TGGTTTTCAATTTCTTAATTGATGTTTCTCATTTACCCAAAAGCTTTAAATGTTCATCATCTTGGCATGGAACACAGTAGACATTAAGGTTTACAACCAATGTCTGTCATTGCCATCTGAATGTGTTGGTGACATTCCTGGTGTGGCAAGCTAGGTGGGTGTGCCCTCATCAACAAAGGAGGCTGAATTCTATATTCTGCACTGTAGGGactgtctttctctttcactcGCTTGCTTTTTAAATGACACAATTCAT-CCATTCTTAATGGGAGTcagggggagaaaggaagaaggaaacgaaagcaaacagaaaaacctACTCAATGCCCGCAACTGTTACTATTATCTTGGTGTAGAACtctaagtactttttaaaatatacttg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82493582 385 + 85787240 TGGTTTTCAATTTCTTAATTGATGTTTCTCATTTACCCAAAAGCTTTAAATGTTCATCATCTTGGCATGGTACACAGTAGACATTAAGGTTTACAATCAATGTCTGTCATTGCCATCTGAATGTGTTGGTGACATTCCTGGTGTGGCAAGCTAGGTGGGTGTGCCCTCATCAACAAAGGAGGCTGAATTCTATATTCTGCACTGTAGGGACTGTCTTTCTCTTTCACTCGCTTGCTTTTTAAATGACACAATTCAT-CCATTCTTAATGGGAGTCATGGGGagaaaggaagaaggaaacgaaagcaagcagaaaAACCCACTCAGTGCCCGCAACTGTTACTATTATCTTGGTATAGAACTCTAAGTACTTTTAAAAATATACTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14175345 381 - 49578535 TGGTTTTCAGTTTCTTAACTGATGTTTCTGGTTTACCTGAAAGACTTAACTGTTCAGGATCTTGGCGTGGTACGCCTTAGAAATTAAGGTTTACGACCAATGTCTGTCATTGCCATTTGAACGTGTTGGTGACATTCCTGGTGT-ACAAGCTAGGTGAGTGTGCCCCCATCAGTCAAGGAGGCTGAATTCTATATGCTACACTATGTGGACTGTCTTTCTCTTTCACTCACTTGCTTTTTAAATGGCACAATGAAT-CCCTTCTTAGTGGGGGTC-AGGAGAGAAAGGAAGAAGGAAATGAAGGCAAGC--AAACACCCGCTCAGCGCCAGCAACTGCCGTTGTTACCTCGGCACGTAGCTCTAGAAAGTTTGTACGATATTCTTG i calJac3.chr19 I 317 C 0 e mm10.chr1 178765759 1597 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I a score=1538960.000000 s hg38.chr1_KI270759v1_alt 167988 524 + 425601 AAATACTTTCATAGGTTTTACAACAAATAGGATTATACAACCAATTTTATCACAGTGAATTTCCAAGTCAATAACTGCTTTTCAGACTATGTTCCAAGGAGGGGCCGGGGTTGCCCAGCTCAAGAGAACAGGAATCCCTGCAAAGGGCCAGGGGCCCGTCAGTGGCTCCTCCTCAGTGCAGCTCTGCTCTCTCGGtttttttattgatacataatagaggtacatattttgggggtgcatgtgataatttaatacgttcatatcattgtaaagatccaattggtgtcattgggatacccattaccttaaatatttcccctttctttatgctagaaacatttgagttcttctgttctagctattttgaaatatacaatagattattgtaaactgtagtcacctactgatctgtcaaacagtagg--tcctttttttttttttttt-------------gagatggagtctcgccctgtcacccagtctggagtgcagtggcatgatctcagctcactgcaacctctgcctcccgggttca s panTro4.chr1 224920393 529 + 228333871 AAATACTTTCATAGGTTTTACAACAAATAGGATTACACAACCAATTTTATCATAGTGAATTTCCAAGTCAATAACTGCTTTTCAGACTATGTTCCAAGGAGGGGCCGGGGTTGCCCAGCTCAAGAGAACAGGAATCCCTGCAAAGGGCCAGGAGCCCGTCAGTGGCTCCTCCTCAGTGCAGCTCTGCTCTCTCGGtttttttattgatacataatagaggtacatattttgggggtgcatgtgataatttaatacattcatatcattgtaaagatccaattggtgtcattgggatacccattatcttaaatatttcccctttctttatgctagaaacatttgagttcttctgttctagctattttgaaatatacagtagattattgtaaactgtagtcacctactgatctgtcaaacagtagg--tcctttttttttttttttt--------ttttggagatggagtctcgccctgtcaccccgcctggagtgcagtggcacgatctcagctcactgcaacctatgcctcccgggttca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226278011 530 - 229942017 AAATACTTTCATAGGTTTTACAACAAATAGGATTATACAACCAATTTTCTCACAGTGAATTTCCAAGTCAGTAACTGCTTTTCAGACTGTGTTCCAAGGAGGGGCCGGGGTTGCCCAGCTCAAGAGAACAGGAATCCCTGCAAAGGGCCAGGGGCCCGTCAGTGGCTCCTCCTCAGTGCAGCTCTGCTCTCTCTGtttttttattgatacataatagaggtgcatattttaggggtgcacgtgataatttaatacattcatatcattgtaaagatcc-attggtgtcattgggatacccattaccttaaatatttcccctttctttatgctagaaacatttgagttcttctgttctagctattttgaaatatacaatagattattgtaaactgtagtcacctactgatctgtcacacagtaggtctcctttttttttttttttt--------tttttgagatggagtctcgccctgtcacccagtctggagtgcagtggcacaatctcagctcactgcaacctctgcctcccaggttca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140168194 536 - 143122389 AAATACTTCCATAGGTTTTATAACAAATAGGATTATACAACCAATTTTCTCACAGTGAATTTCCAAGTCAATAACTGCTTTTCAGGCTATGTTCCAAGGAGGGG-TGGGGTTGCCCAGCTCAAGAGAGCAGGAATCCCTGCAAAGGGCCAGGGGCCCGTCAGTGGCTCCTTCTCAGTGCAGCTCTGCTATCTCTGtttttttattgatacataatagaggtacatattttgggggtgcctgtgataatttaatacattcatatcattgtaaagatccaattggtgtcattgggatactcattaccttaaatatttcccctttctttatgctggaaacatttgagttcttctgttctagctattttgaaatatacaatagattattgtaaactgtagtcacctactgatctgtcaaacagtagg--tcctttttttttttttttttttttttttttttgagatggagtctcaccttgtcacccagtctggagtgcagtggcacgatctcagctcactgcaacctctgcctcccgggttca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16882203 531 - 229590362 AAATACTTTCATAGGTTTTACAACAAATAGGATTATACTGCCAATTTTCTCATAGTGAATTTCCAAGTCAATAACTGCTTTTCAGACTATGTTCCAAGGAGGGGCCGGGATTGCCCAGCTCAAGAGAACAGGAATCCCTGCAAAGGGCCAGGGGCCCGTCAGTGGCTCCTCCTCGGTGCAGCTCTGCTCTCTCTGtttttttattgatacgtaatagaggtacatactttgggggtgcatgtgataatttaatacattcatatcattgtaaagatccaattggtgtcactaggatacccatcaccttaaatgtttcccctttctttatgctagaaacatttgagttcttctgttctagctattttgaaatatacaatagattattgtaaactgtagtcacctactgatctgtcaaaccgtagg--tccttttatttatttattt-----atttttttgagatggagtcttgctctgtc-cccaggctggagtgcagtggcgcgatctcggctcactgtaagctctgcctcccgggttca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223644765 531 - 227556264 AAATACTTTCATAGGTTTTACAACAAATAGGATTATACTGCCCATTTTCTCATAGTGAATTTCCAAGTCAATAACTGCTTTTCAGACTATGTTCCAAGGAGGGGCCGGGATTGCCCAGCTCAAGAGAACAGGAATCCCTGCAAAGGGCCAGGGGCCCGTCAGTGGCTCCTCCTCGGTGCAGCTCTGCTCTCTCTGtttttttattgatacgtaatagaggtacatattttgggggtgcatgtgataatttaatacattcatatcattgtaaagatccaattggtgtcactaggatacccatcaccttaaatgtttcccctttctttatgctagaaacatttgagttcttctgttctagctattttgaaatatacaatagattattgtaaactgtagtcacctactgatctgtcaaactgtagg--tccttttatttatttattt-----atttatttgagatggagtcttgctctgtc-cccaggctggagtgcagtggcgcgatctcggctcactgtaagctctgcctcccgggttca i macFas5.chr1 I 312 C 0 s papAnu2.chr1 16695816 518 - 220367699 aaaTACTTTCATAGGTTTTACAACAAATAGGATTATACTGCCAATTTTCTCATAGTGAATTTCCAAGTCAATAACTGCTTTTCAGACTATGTTCCAAGGAGGGGCCGGGATTGCCCAGCTCAAGAGAACAGGAATCCCTGCAAAGGGCCAGGGGCCCGTCAGTGGCTCCTCCTCAGTGCAGCTCtgctctctctgtttttttattgc-------------tacatattttgggggtgcatgtgataatttaatacattcatatcaTTGTAAAGATCCAATTGGTGTCACTAGGAta-ccatcaccttaaatatttcccctttctttatgctagaaacatttgaGTTCTTctgttctagctattttgaaatatacaatagattattgtaaactgTAGTCACCTACTGATCTGTCAAACCGTagg--tccttttatttatttattt-----atttttttgagacggagtctcgctctgtcgcccaggctggagcgcagtggcgcgatctcggctcactgtaagctctgcctcccgggttca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82493967 532 + 85787240 AAATACTTTCATAGGTTTTACAACAAATAGGATTATACTGCCCATTTTCTCATAGTGAATTTCCAAGTCAATAACTGCTTTTCAGACTATGTTCCACGGAGGGGCCGGGGTTGCCCAGCTCAAGAGAACAAGAATCCCTGCAAAGGGCCAGGGGCCCGTCAGTGGCTCCTCCTCAGTGCAGCCCTGCTCTCTCTGtttttttattgatacgtaatagaggtacatattttgggggcgcatgtgataatttaatacattcatatcattgtaaagatccaattggtgtcactaggatacccatcaccttaaatatttcccctttctttatgctagaaacatttgagttcttctgttctagctattttgaaatatacaatcgattgttgtaaactgcagtcacctactgatctgtcaaaccgtagg--tccttttatttatttattt-----atttttttgagacggagtctcgctctgtcgcccaggctggagtgtagtggcgtgatctcggctcactgtaagctccacctcccgggttca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14175726 523 - 49578535 GAATACCTTCCTAGGTTTTACAGCAAACAGGGTCATACCACCAATTTCGTGACAGGGAATTTCCAGGTCAGCAACTGGTTTTCAGACTGTGCTCCAAGGAGGGATCCGGGTTGTCCGGCTCCAGAGAACGGGAATCCCTGCCGAGGGCTTAGGGCCCGTCAGTGGCTTCTCCTCAGTGTAGCTCTGCTCCCtc--tttttttgttgatacataatagatgtacatattttgggggtacctgtggtaatttaatacattcatatcattgtaaagatccaattggtgtcattgggatacccatcactttaaatatttcccctttatttatcctagaaacatttgagttctccc-ttctagctattttgaaatatacaatagattattataaactgtagtcacttactgatctgccaaacactagg--ttttttttttgtttttttt---------ttttaagatgaagtttcac--tgtcacccaggctggagtgccgtggcgtgatctcagctcactgcaacctccgcctcctgagttca i calJac3.chr19 C 0 C 0 e mm10.chr1 178765759 1597 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I a score=197003.000000 s hg38.chr1_KI270759v1_alt 168512 87 + 425601 agtcattctcctgcctcagcctcccgagtggctgggactacaggtgcccgccaccacatctggctaattttttgtatttttagtaga s panTro4.chr1 224920922 87 + 228333871 agtgattctcctgcctcagcctcccgagtagctgggactacaggtgcctgccaccacatctggctaattttttgtatttttagtaga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226278541 87 - 229942017 agtgattcttctgcctgagcctcccgagtagctgggactacaggtgcccgccaccacatctggctaattttttgtatttttagtaga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140168730 87 - 143122389 agtgattctcctgcttcagcctccccagtagctgggactacaggcgcccaccaccatgcccagctaattttttgtatttttagtaga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16882734 87 - 229590362 cgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccacctcgcctggctaattttttgtatttttagtaga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223645296 87 - 227556264 caccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccacctcgcctggctaattttttgtatttttagtaga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16696334 86 - 220367699 cgccattctcctgcctcagcctcccgagtagctgggactacaggcg-ccgccacctcgcctggctaattttttgtatttttagtaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82494499 87 + 85787240 ggccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccacctcgcccggctagttttttgtatttttagtaga i chlSab2.chr25 C 0 C 0 e mm10.chr1 178765759 1597 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14176249 0 - 49578535 C a score=201552.000000 s hg38.chr1_KI270759v1_alt 168599 116 + 425601 gatggggtttcaccacattagccaagatggtcttgatctcctgacctcgtgatccacctgcctcagcctcccaaagtgctgggattacaggcgtgagccactgctcctggcttttt s panTro4.chr1 224921009 115 + 228333871 gatggggtttcaccacattagccaagatggtcttgatctcctgacctcgtgatccacctgcctcagcctcccaaagtgctgggattacaggcgtgagccact-cgcctggcttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226278628 116 - 229942017 aatggggtttcaccacgttagccaagatggtcttgatctcctgacctcgtgatccacctgccttggcctcccaaactgctgggattacaggcaggagccactgcgcctggcttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140168817 116 - 143122389 gacggggtttcaccacgttagccaggatggtcttgatctcctgacctcgtgatctgcccgccttgggctcccaaagtgctgggattacaggcatgagccactgtgcctggcctttt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223645383 116 - 227556264 gagtgggtttcaccacgttagccaggatggtcttgatctcctgaccttgtgatccacccacttcggcctcccaaagtgctgggattacaggcatgagccactgtgcctggccTttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16696420 116 - 220367699 gacggggtttcaccacgttagccaggatggttttgatctcctgaccttgtgatccatccacttcggcctcccaaagtgctgggattacaggcatgagccactgtgcctggcctttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82494586 116 + 85787240 gagggggtttcaccacgttagccaggatggtcttgatctcctgacctcatgatccacccacctcggcctcccaaagtgctgggattacaggcatgagccactgtgcctggccTttt i chlSab2.chr25 C 0 I 38 e mm10.chr1 178765759 1597 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14176249 0 - 49578535 C e rheMac3.chr1 16882821 0 - 229590362 C a score=-1693.000000 s hg38.chr1_KI270759v1_alt 168715 24 + 425601 --------------------------tttgttgttgtttttttttttttg--- s panTro4.chr1 224921124 17 + 228333871 --------------------------tt-------gtttttctttttttg--- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226278744 21 - 229942017 --------------------------tt---ttttttttttttttttttg--- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140168933 14 - 143122389 --------------------------tt----------tttttttttaag--- i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223645499 37 - 227556264 a-------------ttatttatttattt---atttatttatttatttCTgaag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16696536 50 - 220367699 atttatttatttatttatttatttattt---atttatttatttatttctgaag i papAnu2.chr1 C 0 C 0 e mm10.chr1 178765759 1597 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14176249 0 - 49578535 C e rheMac3.chr1 16882821 0 - 229590362 C e chlSab2.chr25 82494702 38 + 85787240 I a score=114955.000000 s hg38.chr1_KI270759v1_alt 168739 76 + 425601 gagtctcactctgtcgcctgggctggagtgcaatggtgcgatcttggctcactgcaacctccacctccctggttcc s panTro4.chr1 224921141 76 + 228333871 gagtctcactctgtcgcctgggctggagtgcaatggtgcgatcttggctcactgcaacctccacctccctggttca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226278765 76 - 229942017 gagtctcactctgtcgcctgggctggagtgcaatggtgcaatcttggctcactgcaacctctacctccctggttca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140168947 76 - 143122389 gagtctcactctgtcaccctggctggagtatagtggtgtgatcttggcttactgcaacctccacgtcctgggttca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223645536 76 - 227556264 gagtctcactctgttgcccgggctggagtgcaatggtgcgatcttggctgactgcaacctccacctctcgggttca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16696586 76 - 220367699 gagtctcactctgttgcccgggctggagtgcaatggtgcgatcttggctgactgcaacctccacctctcgggttca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82494740 54 + 85787240 gagtctcactctgttgcctgggctggagtgcaatggtgcaat----------------------ctctcgggttca i chlSab2.chr25 I 38 C 0 e mm10.chr1 178765759 1597 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14176249 0 - 49578535 C e rheMac3.chr1 16882821 0 - 229590362 C a score=121405.000000 s hg38.chr1_KI270759v1_alt 168815 54 + 425601 agtgattctcctgcctcagcctcccgagtagctggaattacaggcatgcgccat s panTro4.chr1 224921217 54 + 228333871 agtgattctcctgcctcagcctcccgagtagctggaattacaggcatgcaccat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226278841 54 - 229942017 agtgattctcctgcctcagcctcccgagtagctggaattacaggcatgcgccat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140169023 54 - 143122389 agtgattctcctgcctcagcctcacgagtagctggaattacaggcatgtgccat i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223645612 54 - 227556264 aatgattctcctgcctcagcctcccaagtagcgggaattacaggtgcgcaccat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16696662 54 - 220367699 aatgattctcctgcctcagcctcccgagtagcgggaattataggtgcgcaccat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82494794 54 + 85787240 aatgattctcttgcctcagcctcccgagtagcgggaattacaggtgcccaccat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14176249 54 - 49578535 aatgattctcctgcctcagcctcctgagtcgctgggattacaggcgtgcaccac i calJac3.chr19 C 0 C 0 e mm10.chr1 178765759 1597 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e rheMac3.chr1 16882821 0 - 229590362 C a score=4453052.000000 s hg38.chr1_KI270759v1_alt 168869 1621 + 425601 catgcctggcttattttttgcatttttagtagagat-ggggtttcaccatgttggccaggctggtcttgaactcctgacttcaggtgatccgcctgccttggcctcccaaagtgctgggattacagacgtgagccaccgcacgcagcctcaaacactgggtcttatttcttctagcacactgtatacttgtacccactaaacaacttctcttcgtctccc----atccccgctgcccatcccagcctctggtaaccacccatctactctctgtcttcaccaactccacttgtttagttcccaaatatgagtgagaacgtgtgatatttgtctttctgtgcctggttcatttcacttcccataatgacctctagttccatgcatgttgTACAGCTCTTCTCTCATTGGAATATATTTTGTAAAACAAACAA------AAAAAAATTGGGGG------TATGAAAGGTTTTCACTGCTCATATAAATGACAACTTGTAAACTACTGTGAATAGCAATATTTTCATTGAGTAGAGTGCTACCAATATGCCCATTCAGAATGAAAAACTCTGACAAACAGCTCTGTCCGTATATCCTTA-TCACTCACTGACAATCTTTTGATTGGCACTGGAGCACCCATCTGCTGGGTTTTGTGGAGACTGTGGCCATCTCTGCCTTTTAGACTGAGCTGCTCAGACAGTTGACCCAACACCGGCTGCCTCCTTGCCACTGAATCGGAATGAGGT--CATACTTGTACATGCTTCTTGGAAGGTTTTCAGGCCTCAGCTCTACTGAGCGAAGACTTGGTTGAGTAACAAGTGAGGAGGAAACTGTAGGGTTCCATTGTTTACAATGGGGACAGCCTGCGGCACCACTAGACATTCTGAGGCGGGTCCTGGTTGGG-----GGTCAGAAGGTCATTGGATAGGCGGGAAAAAAAATCATTGCAAGgttatgattgcaccagtgcattccagcctgggcgacagagccagactccatctcttacaaataaaTCAGAGgaatgggagaaaatatttacaaatcatgcatttgatatttctccaatcatataccggtggccaataagcacacgaaaagatgcttaacatcattagtcattaggaaaatgcaaataaaaaccacaatgagatgccacttcaaaccgtctgggatgactataatcaaaaagacagatcgtgcattgggggcattttgagcattggtgaggatgtggagaagctggaacagtctatacgttgtttgtgggaatgtaaaacagggcagccgctgtggcacagtctggctgttcctcaaaagcttaaacacagagttaccaaatgatctaacaattccattcttagggatatacccaagagaactgaaaacatacatccacacaaacattagtacacgaatgttcatggcagcgttagtcaaaatagccaaaatgga--ggaagtaacccaaaggtctatcc-ctgatgcatgaataaac--aatgtggtgtatttgcacaatggaaagttattcgccacaaaaaggaataaagtgctgatgcatgctgccatgtggatggaccttgtaaacgttctggtagctgaaataagccagatacaaaaggccacatatagtaaactgcgtttatat s panTro4.chr1 224921271 1620 + 228333871 catgcctggctaattttttgcatttttagtaaagat-ggggtttcaccacgttggccaggctggtcttgaactcctgacttcaggtgatccgcctgccttggcctcccaaagtgctgggactacagacgtgagccactgcatgcagcctcaaacactgggtcttatttattctagcgcactgtatacttgtacccactaaacaacttctcttcatccccc----atccccgctgcccatcccagcctctggtaaccacccatctactctctgtcttcaccaactccacttgtttagttcccaaatatgagtgagaacgtgtgatatttgtctttctgtgcctggttcatttcacttcccataatgacctctagttccacgcatgttgTACAGCTCTTCTCTCATTGGAATATATTTTGTAAAACAAACAA------AAAAAAATTGGGGG------GATGAAAGGTTTTCACTGCTCATATAAATGACAACTTGTAAACTACTGTGAATAGCAATATTTTCATTGAGTAGAGTGCTACCAATATGCCCATTCAGAATTTAAAACTCTGACAAACAGCTCTGTCCGTATATCCTTA-TCACTCACTGACAATCTTTTGATTGGCACTGGAGCACCCATCTGCTGGGTTTTGTGGAGACTGTGGCCATCTCTGCCTTTTAGACTGATCTGCTCAGACAGTTGACCCAACACTGGCTGCCTCCTTGCCACTGAATGGGAATGAGGT--CGTACTTGTACATGCTTATTGGAAGGTTTTCAGGCCTCAGCTCTACTGAGCGAAGACTTGGTTGAGTAACAAGTGAGGAGGAAACTGTAGGGTTCCATTGTTTACAATGGGGACAGCCTGCGGCACCACTAGACATTCTGAGGCGGGCCCTGGTTGGG-----GGTCAGAAGGTCATTGGATAGGCGGGAAAAAAA-TCATTGCAAGgttatgattgcaccaatgcattccagcctgggcgacagagccagactccatctcttacaaataaaTCAGAGgaatgggagaaaatatttacaaatcatgcatttgatatttctccaatgatataccggtggccaataagcacacgaaaagatgcttaacatcattagtcattaggaaaatgcaaataaaaaccacaatgagatgccacttcaaaccgtctgggatgactatcatcaaaaagacagatcgtgcattgggggcattttgagcattggtgaggatgtggagaagctggaacagtctatacgttgtttgtgggaatgtaaaacagggcagccgctgtggtacagtctggctgttcctcaaaagcttaaacacagagttaccaaatgatctaacaattccattcttagggatatacccaagagaactgaaaacatacatccacacaaacattagtacacgaatgttcatggcagcgttagtcaaaatagccaaaatgga--ggaagtaacccaaaggtctgtcc-ctgatgcatgaataaac--aatgtgctgtatttgcacaatggaaagttattcgccacaaaaaggaataaagtgctgatgcatgctgccatatggatggaccttataaacgttctggtagctgagataagccagatacaaaaggccacatatagtaaattgcgtttatat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226278895 1621 - 229942017 catgcccggctaattttttgcatttttagtattgat-ggggtttcaccatgttggcctggctgctcttgaactcctgacttcaggtgatccgcctgccttggcctcccaaagtgctgggattataggcgtgagccactgcacccagcctcaaacactaggtcttatttcttctagcacactgtatacttgtacccactaaacaacttctcctcatccccc----atgcctgccacccatcccagcctctggtaaccacccatcta--ctctgtcttcaccagctccacttgtttagttcccaaatatgagtgagaacgtgtgatatttgtctttctgtgcctggttcatttcacttcccataatgacctctagttccacacatgttgTACAGCTCTTCTCTCATTGGAATATATTTTGTAAAACAAACAA------ACAAAAATTGGGGG------GATGAAAGGTTTTCACTGCTCATATAAATGACGACTTGTAAACTACTGTGAATAGCAATATTTTCATTGAGTAGAGTGCTACCTATATGCCCATTCAGAATTAAAAACTCTGACAAATAGCTCTGTCCATATACCCTTGCTCACTCACTGACAATCTTTTGATTGGCACTGGAGCACCCATCTGCTGGGTCTTGTGGAGACTGTGGCCATCTCTGCCTTTTAGACTGAGCTGCTCAGACAGTTGACCCAACACTGGCTGCCTCCTTGACACTGAGTGGGAATGAGGT--CGTACTTGTACATGCTTATTGGAAGGTTTTTGGGCCTCAGCTCTACTGAGCGAAGACTTGGTTGAGTAACAAGTGAGGAGGAAACTGTAGGGTTCCATTGTTTACAATGGGGACAGCCTGAGGCACCACTAGACATTCTGAGGTGGGCCCTGGTTTGG-----GGTCAGAAGGTCATTGGATAGGTGGGAAAAAAAATCATTGCAAGgttatgattgcaccaatgcattccagcctgggcgacagagctagactccatctcttacaaaTCAATCAGAGgaatgggagaaaatatttacaaatcatgcatttgatatttctccaatgatataccagtggccaacaagcacaggaaaagatgcttaacattgttagtcattaggaaaatgcaaataaaaaccacaatgagatgccacttcaaaccttctgggatgactatcatcaaaaagacagatcatgcattgggggcattttgagcattggtgaggatgtggagaagctggaacagtc-atacgttgtttgtgggaatgtaaaacagggcagccgctgtggcacagtctggctgttcctcaaaagtttaaacacagagttaccaaatgatctaacaattccattcttagggatatacccaagagaactgaaaacatacatccacacaaacattagtacatgaatgttcatggcagcgttagtcaaaatagccaaaatgga--ggaagtaacccaaaggtctatcc-ctgatgcatgaataaactgaatgtggtgtatttgcacaacggaaagttattcaccacaaaaaggaataaagtgcagatgcatgctgccatgtggatgggccttgtaaacgttctggtagctgaaataagccagatacaaaaggccacatatagtaaattgcgtttatat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140169077 1615 - 143122389 catgcctggctaa-tttttgtatttttagtagaggc-ggggttttgccatgttggtcaggctggtcttgaactcctgacttcagataatctgcctgccttggcctcccaaagtgttgggattacaggcgtgagccactgcgcccagcctcaaacactaggtcgtatttcttctagcacactgtatacttgtacctactaaacactttctcttcatcccct----atccccgctacccatcccagcctctggtaaccacccgtctactctctgtcttcaccaaccccacttgtttagttcccaaatatgagtgagaatgtgtgaaatttgtctttctgtgcctggttcatttcacttcccataatgacctctagttccgtgcatgttgTACAGCTCCTTTCTTGTTGGAATATATTTTGTAAAACAACAAC------AAAAAAATTTGGGG------GATGAAAGGTTTTCACTGCTCATACAAATGACAACTTGTAAACTAATGTGAATAGCAATATTTTCTTTGAGTAGAGTGCTACCTATTTGCCCATTCAGAATTAAAAA--CTGACAAACAGCTCTGTCCGTATATCCTTA-GCACTCACTGACGGTCTTTTGATTGGCACTGGAGCACCCATCTGCTGGGTCTTGCAGAGACTGTGGCCATCTCTGCCTTTTAGACCGAGCTGCTCAGACAGTTGACCCAACACTGGCTGCCTCCTTGCCACTGAATGGGAATGAGGT--CATACTTGTACATGCTTATTGGAAGGTTTTCGGACCTCAGTTCTGCTTGGCAAAGACTTGGTTGAATAACAAGTGAGGAGGAAACTGCAGGGTTCCATTGTTTATGATGGGGACAGCCTGCGGCACCACTAGACATTCTGAGGCGGGCCCTGGTTGGG-----GGTCAGAAGGTCATTGGATAGGTGGAAAAAAA--TCATTGCAAGgttatgattgcaccaatgcattccagcctgggtgacagagccagactccatctcttacaagtaaaTCAGAGGAATGGGAGAAAAGATTTACAAGTCATGCATTTgatatttctccaatgatataccagtggccaataagcacatgaaaagatgcttaacatcattagtcattaggaaaatgcaaataaaaaccacaatgagatgccacttcaaaccctctgggatgactataatcaaaaagacagatcgtgcattgggggcatttcgaatgttggcgaggacgtggagaagttggaacagtc-atatgttgtgtgtgggaatgtaaaacagggcagccgctgtgccatggtctggctgttcctcaaaagcttaaacacagagttaccaaatgatctaacaattcgattcttagggatatgcccaagagaactgaaaacatacatccacacaaacattggtacacgaatgttcatggcagctttagtcaaaatagccaaaatgga--ggaagtaacccaaaggtctgtcc-ctgatgcatgaataaac--aatgtggtgtatttgcacaatggaaagttattcgccacaaaaaggaataaagtgctgatgcatgctgccatgtggatggaccttgtaaacgttccggtagctgaaataagccagatacaaaaggccacatatagtaaattgcgtttatgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16882821 1623 - 229590362 catgcctggctaa-tttttgtatttttagtagagac-ggggttttgccatgttggccaggctggtcttgagctcctgacctcaggtgatccgcctgccctggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggcctcaaacacta-gtcttgtttcttctagcacaccatatacttgtacccactaaacaacttctcttcatccccc----ctccccactactcgtcccagcctctggtaaccaccaacctgctctctgtcttcaccagctccacttgtttagttcccaaatatgagtgagaacgtgtgatatttgtctttctgtgcctggttcatttcacttcccataatgacctctagttccacgcatgttgTACAGCTCCTCTCTTGTTGGAATATATTTTGTAAAACAACAAC------AAAAAAATTGGGAG------GAGGAAAGGTTTTCACTGCTTATATAAATGACAACTTGTAAAGTAATGTGAATAGCAATATTTTCATTGAGTAGAGTGCTACCTATTTGCCCATTCAGAATTTAAAACTCTGACAAACAGCTCTGTCCATATATCCTTGTTCACTGACTGATGGTCTTTTGATTGGCACTGGAACACCCATCTGCTGGGCCTTGCTGAGACTGTGGCCATCTCTGCCTTTTGGACCGAGCTGCTCAGACAGTTGACCTGACATTGGCTGCCTCATTGCCACTGAATGGGGATGAGGT--CCTGCTTGTCCATGCTTGTTGGAAGGTTTTCGGGCCTTAGCTCTGATGAGCAAAGACTTGGTTGAGTAACAAGGGAGGAGGAAACTGCAGGGTTCCATTGTTTACAACGGGGACAGCCTGCGGCACCACTGGACATTCTGAAGTGGGCCCCGGTTGGATCATTGGGTAGAAGGTCATTGGGTAGGTGGGAAGAAAA-TCATTGCAAGGTTATgattgcaccactgctttcccgcctgggcaacagagccagactccatctcTTACAAATAAATCAGAGgactgggagaaaatatttacaaatcatgcatttgatatttctccagtgatatatcagtggccaataagcacatgaaaaggtgcttaacatcattagtcattaggaaaatgcaaataaaaaccacaatgagatgccacttcagatcctctgggatgactataatcaaaaagacagataatgcactgggggcatttcgagcgttggcgaggatgtggagaagctggaacagtc-atatgttgtttgtgggaatgtaaaacagtgcagccactgtggcacagtctggccgttcctcaaaaggttaaacacagagttaccaaatgatctagcaattccattcttagggataaacccaagagaactgaaaacatacatccacacaaacatt-gtacacgaatgtaca--gcagcattagtcaaaatagccaaaataga--ggaagtaaccctaaggtctatcagctgatgcaggaataaaccgaacatggtgtatttgcacagtggaaagttattcgccacaaaaaggaataaactactgatgcatgctgcagtgtggatggaccttgtgaacgttctggtagctgaaataagctagatacaaaaggctacagatagtaaattgcatttatat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223645666 1581 - 227556264 catgcctggctaa-tttttgtatttttagtagagac-ggggttttgccatgttggccaggctggtcttgagctcctgacctcaggtgatctgcctgccctggcctcccaaagtgctgggattacaggcatgagccactgcgcccggcctcaaacacta-gtcttgtttcttctagcacaccatatacttgtacccactaaacaacttctcttcatccccc----ctccccactactcgtcccagcctctggtaaccaccaacctgctctctgtcttcaccagctccacttgtttagttcccaaatatgagtgagaacgtgtgatatttgtctttctgtgcctggttcatttcacttcccataatgacctctagttccatgcatgttgTACAGCTCCTCTCTTGTTGGAATATATTTTGTAAAACAACAAC------AAAAAAATTGGGAG------GAGGAAAGGTTTTCACTGCTTATATAAATGACAACTTGTAAAGTAATGTGAATAGCAATATTTTCATTGAGTAGAGTGCTACCTATTTGCCCATTCAGAATTAAAAACTCtgacaaacagctctgtccatatatccttgctcactgactgatggtcttttgattggcactggaacacccatctgctgggccttgctgagactgtggccatctctgccttttggacCGAGCTGCTCAGACAGTTGACCTGACATTGGCTGCCTCATTGCCACTGAATGGGGATGAGGT--CCTGCTTGTCCATGCTTGTTGGAAGGTTTTCGGGCCTTAGCTCTGCTGAGCAAAGACTTGGTTGAGTAACAAGTGAGGAGGAAACTGCAGGGTTCCATTGTTTACAACGGGGACAGCCTGTGGCACCACTGGACATTCTGAAGTGGGCCCTGGTTGGGTCATTGGGTAGAAGGTCATTGGGTAGGTGGGAAAAAAA-TCATTGCAAGgttatgattgcaccactgctttcccgcctgggcaacagagccagactctatctcTTACAAATAAATCAGAGgactgggagaaaatatttacaaatcatgcatttgatatttctccagtgatatatcagtggccaataagcacatgaaaaggtgcttaacatcattagtcattaggaaaatgtaaataaaaaccacaatgagatgccacttcaaatcctctgggatgactataatcaaaaagacagataatgcactgggggcatttcgagcgttggtgaggatgtggagaagctgg-------------------------------------------actgtggcacagtctggccattcctcaaaaggttaaacacagagttacaaaatgatctagcaattccattcttagggataaacccaagagaactgaaaacatacatccacacaaacatt-gtacacgaatgtaca--gcagcattagtcaaaatagccaaaataga--ggaagtaaccctaaggtctatcagctgatgcaggaataaaccgaacatggtgtatttgcacagtggaaagttatttgccacaaaaaggaataaactactgatgcatgctgcagtgtggatggaccttgtgaacgttctggtagctgaaataagctagatacaaaaggctacagatagtaaattgcatttatat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16696716 1623 - 220367699 catgcctggctaa-tttttgtatttttagtagagac-ggggttttgccatgttggccaggctggtcttgagctcctgacttcaggtgatctgcctgccctggcctcccaaagtgctgggattacaggcatgagccactgcgcccagcctcaaacACTA-GTCTTGTTTCTTCTAGCACACCATATACTTGTACCCACTAAACAACTTCTCTTcatccccc----ctccccactactcatcccagcctctggtaaccaccaaccTGCTCTCTGTCTTCACCAGCTCCACTTGTTTAGTTCCCaaatatgagtgagaacgtgtgatatttgtctttctgtgcctcgtTCATTTCACTTcccataatgacctctagttccatgcATGTTGTACAGCTCCTCTCTTGTtggaatatattttgtaaaacaacaac------aaaaaaattgggaG------GAGGAAAGGTTTTCACTGCTTATATAAATGACAACTTGTAAACTAATGTGAATAGCAATATTTTCATTGAGTAGAGTGCTACCTATTTGCCCATTCAGAATTAAAAACTCTGACAAACAGCTCTGTCCATATATCCTTGCTCACTGACTGATGGTCTTTTGATTGGCATTGGAACACCCATGTGCTGGGCCTTGCTGAGACTGTGGCCATCTCTGCCTTTTGGACCGAGCTGCTCAGACAGTTGACCTGACATTGGCTGCCTCATTGCCACTGAATGGGGATGAGGT--CCTGCTTGTCCATGCTTGTTGGAAGGTTTTCGGGCCTTAGCTCTGCTGAGCAAAGACTTGGTTGAGTAATAAGTGAGGAGGAAACTGCAGAGTTCCATTGTTTACAACGGGGACAGCCTGTGGCACCACTGGACATTCTGAAGTGGGCCCTGGTTGGGTCATTGGGTAGAAGGTCATTGGGTAGGTGGGaaaaaaa-TCATTGCAaggttatgattgcaccactgctttcccgcctgggcaacagagccagactccatctcttacAAATAAATCAgaggactgggagaaaatatttacaaatcatgcATTTGATATTTCTCCAGTGATATATcagtggccaataagcacatgaaaaggtgcttaacatcattagtcattaggaaaatgcaaataaaaaccacaatgagatgccacttcaaaTCCTCTGGGatgactataatcaaaaagacagataatgCACTGGGGGCATTTCGAGcgttggcgaggatgtggagaagctgGAACAGTC-ATATgttgtttgtgggaatgtaaaacagtgTGGCCACTGTGGCACAGTCTGGccgttcctcaaaaggttaaacacagagttaccaaatgatctagcaattccattcTTAGGGATaaacccaagagaactgaaaacatacatccacacaaacATT-GTACACGAATGTACA--GCAGCATTAGTCAAAATAGCCAACATAGA--GGAAGTAACCCTAAGGTCTATCAGCTGATGCAGGAATAAACCGAACATGGCGTATTTGCACAGTGGAAAGTTATTcgccacaaaaaggaataaactactgatGCATGCTGCAGTGTGGATGGACCTTTTGAACGTTCTGGTAGCTGAAATAAGCTAGATACAAAAGGCTACAGATAGTAAattgcatttatat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82494848 1622 + 85787240 catgcctggctaa-gttttgtgtttttattagagac-ggggttttgccatattggccaggctggtcttgagctcctgacttcaggtgatctgcctgccctggcctcacaaagtgctgggattacaggcatgagccactgcacccagcctcaaacacta-gtcttgtttctcctagcacgctgtatactcgtacccactaaacaactgctcttcat-cccc----ctccccactactcgtcccagcctctggtaaccaccaacctgctctctgtcttcaccagctccacttgtttagttcccaaatatgagtgagaacgtgtgatatttgtctttctgtgcctggttcatttaacttcccataatgacctctagttccacgcgtgttgTACAGCTCTTCTCTTGTTGGAATATATTTTGTAAAACAACAAC------GAAAAAATTGGGAG------GATGAAAGGTTTTCACTGCTTATATAAATGACAACTTGTAAACTAATGTGAATAGCAATATTTTCATTGAGTAGAGTGCTACCTATTTGCCCATTCAGAATTAAAAACTCtgacaaacaactgtgtccatatatccttgctcactcactgatggtcttttgattggcactggaacacccatctgctgggcctcgctgagactgtggccgtctctgccttttggacCGAGCTGCTCAGACAGTTGACCTGACATTGGCTGCCTCATTGCCACTGAATGGGGATGAGGT--CCTGCTTGTCCATGCTTGTTGGAAGGTTTTCGGGCCTTAGCTCTGCTGAGCAAAGACTTGGTTGAGTAACAAGTGAGGAGGAAACTGCAGGGTTCCATTGTTTACAACGGGGACAGCCTGCGGCACCACTGGACATTCTGAAGTGGGCCCTGGTTGGGTCATTGGGTAGAAGGTCATTGGGTAGGTGGGAAAAAAA-TCATTGCAAGGTTATGATTGCACCACTGCTTTCCCACCTGGGCAACAGAGCCAGACTCCATCTCTTACAAATAAATCAGAGGACTGGGAGAAAATATTTACAAATCATGCATTTGCTGtttctccagtgacatatcagtggccaataagcacatgaaaaggtgcttaacttcattagtcattaggaaaatgcaaataaaaaccacaaggagatgccacttcaaaccctctgggatgactataatcaaaaagacagataatgcactgggggcatttcaagcgttggcgaggatgtggagaagctgggacagtc-atacgttgtttgtgggaatgtaaaacagtgcggccactgtggcacagtctggccgttcctcaaaaggttaaacacagagttaccaaatgatctagcaattccattcttagggataaacccaagagaactgaaaacatacaaccacacaaacatt-gtacacgaatgtaca--gcagcgttagtcaaaatagccaaaataga--ggaagtaaccctaaggtctatcagctgatgcaggaataaaccaaacatgctgtatttgcacagtggaaagttattcgccacaaaaaggagtaaactactgatgcatgctgcagtgtggatggaccttgtgaacgttctggtagctgaaataggctagatacaaaaggctacagatagtacattgcatttatat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14176303 1574 - 49578535 catgcttggctaa-ttattgtatttttagtggagacaagggtttcactacattggccaggctggtctcaagctcctggcctcagatgatctgcctgcctcggcctcccaaagtgctgagattacaggcatgagccgctgcgcccggcctcatacattaggtgttatttcttatatcacactgtaaacttacacccattaaacaacttctcttcatcctcccccaccccctgcttcccgtcccagcctctactaacgactgatcta--cttcgtcttcacctgatctacctgttcagtt-ccacatatgagagagaccgtgtgaggcgtgtctttctgtgcctggttcctttcacttcacgtcatgacctctggttccacacgtgttgTACAGCTCCTCTCTCATTGGAATATATTTTGTAAAACAACAACAACCAAAAAAAAACTGGGGAGCAGGTGGTGACAGATTTTTGCTACTCATATAAATAACACCTCGGTAACTAATGCGCATAGCGATACT----CTGAGTAGAGGGCTGCCTATATGTGCGCTCAGAATTAAACACTGCGACAAGCAGCTCTGTCCACATGTCCTTGCTCACTCGCTGATGGTCTTTTCGTGGGCCCTGGAGCACCCATCTGCTGGGCCTTGCTGAGACCGTGG----------------------GCTGCT----CAGTTGACCCAACACTGGCCGCCTCGCTGCCACCAAAGAGGAATGAGACTGCGTACCTGTCCATGCGTATTGGCAGGTTTTCAGGCCTCCGCTCTGCTGAGCAAACACTTGGTTGAGTAACAGGTGGGGAGGAAAC-GCAGGCTTCCATTATTTATGATGGGGACAGCTGGCAGCACCACTAGATGTTCCGA-GTGGGCCCTggttggg-----ggtcagaaggtcattgagtcggtggggaaagaatgcggtgcaaggttatgatcctaccagtgcactccagcctgggcggcagagccagaccctgtctcttacaaaTGCATCCGAGGAATGGGAGAAAATATTCACAAATCATGCATTTACTATTTCCCTAGTgatataccagtggccgatgagaacatgaagagatgcttactatcgtcagtc---aggaaaatccaaacagaaaccacagccagaggccaccacacaccctccaggatgactgtgatcgaaaagacgg----tgtact-ggggcattttgagtgttggcaaggatgtggggaagctggaacactt-acacgt----cgtgggaatgtaaaacggtgcagccacggtga-acagtctggctgctcctccaaaggttaaacacacagtcaccaaatgatctagcagctcctttcttaggaa---------------tgaaagcacacatccacacaaaaattggtacacgagtgttcatagcagcattagtcaaaatagccaaaaaaaagcggaagtaatgcaaatggcttacagccaatgggtgaataaacaaaatgtggtgtgcttttacaatggaaagttattccccacgaaaaggaataaagggctgatacccgctaccatgtggacggacct------cgttctggtagctgagatgagccagatacaaaaggccacatacagta-attacatttatat i calJac3.chr19 C 0 I 749 e mm10.chr1 178765759 1597 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I a score=1384880.000000 s hg38.chr1_KI270759v1_alt 170490 642 + 425601 gaaatgtccaaaataggcaaaactatagagacagaaaatacatttgtggttgcctagaactgggggtgttgagtgagacgaggagtgagtgttaaagggtgtgagtgaggaagatattccgtgttccatgatgattacatcattacatgcatagtgattgcacaactctgtgaatatatgaaaaatcacttagctgtatac-tta---tggtgagctttatgttatgtgaattttatctcaatattaattttaaaaTCCAATGAAGGGCAAATTTAT-ATTGTTTTTGGCTTTTAAGAAACTGTCTTAAAAGACACatttatttatttatttatttatttatttatttacttacttacttacttacttacttgagacaggg--tcttgctctgtcacccaggctgaagtgcagtggcgtgaccttggctcactgcagccttgacctcccgggctcaagtgatgctcacacctcagcctcccgagtagttgagaccacagacacatgccatcatgcccagcgattttttgtagacatggggtttcaccatgttgcccaggctggtc-tgaactcttgggctcaagtgatccgcctgccttagcctcccaaagtgctgggattacagacgagagccaccgcacctggccACC s panTro4.chr1 224922891 622 + 228333871 gaaatgtccaaaataggcaaaactatagagacagaaaatacatttgtggttgcctagaactgggggtgttgagtgagatgaggagtgagtgttaaagggtgtgagtgaggaagatattccgtgttccatgatgattacatcgttacatgcatagtgattgcacacctctgtgaatatatgaaaaatcacttagctgtatac-cta---tgctgagctttatgttatgtgaattttatctcaacattaattttaaaaTCCAATGAAGGGCAAATTTAT-ATTGTTTTTGGCTTTTAAGAAACTGTCTTAAAAGACACatttatatatttatttatttatttattta--------------------cttacttgagacgggg--tcttgctctgtcacccaggctgaagtgcagtggcgtgaccttggctcactgcagccttgacctcccgggctcaagtgatgctcacacctcagcctcccgagtagttgagaccacagacacatgccatcatgcccagctaatttttgtagacatggggtttcaccatgttgcccaggctggtc-tgaactcttgggctcaagtgatccgcctgccttagcctcccaaagtgctgggattacagacgagagccaccgcacctggccACC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226280516 627 - 229942017 gaaatgtccaaaataggcaaaactatagagacagaaaatacatttgtggttgcctagaactgggggtgttgagtgagatgaggagtgagtgttaaagggtatgagtgaggaagatactctatgttccatgatgattacatcattacatgcatagtgattgcacaactctgtgaatatattaaaaatcacttagttgtatgcttta---tggtgagctttatgttatgtgaattttatctcaatattaattttaaaaTCCAATGAAGGGCAAATTTAT-ATTGTTTTTAGCTTTTAAGAAACTGTCTTAAAAGACACatttatatatatatttatttatttactta----------------cttacttacttgagacaggg--tctcgctctgtcacccaggctgaagtgcagtggcgcgaccttgactcactgcagccttgacttcccgggctcaagtgatgctcacatctcagccttccaagtagttgggaccacaggcacctgccatcatg-ccggctaatttttgtagacatggggtttcaccatgttgcccaggctggtcttgaactcctgggctcaagtgatccgctcaccttagcctcccagagtgctgggattacagacgagagccaccgcacctggccATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140170692 620 - 143122389 gaaatgtccaaaataggcaaaactatcgagacagaaaatacatttgtggttgcctagaactgggggtgttgagtgagatgaggagtgagtgttaaagggtgtgagtgaggaagatattctatgttccatgatgattacatcattacatgcatagtgattgcacaactctgtgaatatattaaaaatcacttagtcatatacttca---tggtgagctttatgttatgtgaattttatctcaatattaattttaaaaTCCAATGAAGGGCAAATTTAT-ATTGTTTTTGGCTTTTAAGAAACTGTCTTAAAAGACACATT--------TATTTATTTATTTACTGG----------------CTGACTGACttgagacaggg--tctcgctctgtcacccaggctgaagtgcagtggtgcgaccttggctcactgcagcctggacctcccgggcacaagtgatgctcacacctcagcctcctgactagttgggaccacaggcacatgccatcattcccagctaatttttgtagacatggggtttcaccatgttgcccaggctggtcttgaactcctgggctcaagtgatccgctcgccttagcctcccagagtgctgggattacagacaagagccaccgcacctggccACC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16884444 601 - 229590362 gaaatgtccagaataggcaaagctatagagacagaaaatacatttgcggttgcctagaactgggggtgttgagtgagaggaggagggagtgtgaaaggatgtgaatgaggaagatattctgtgttccatgatgatcacatcatcatatgcatagtgattgcacaactctgtgaatatattaaaaatcacttagttgtgtactttaaattggtgagctttatgttatgtgacttttatctcaata------TTAAAATCCAAGGAAGGGCAAATTTAT-GTTGTTTTTGGCTTTTAAGAAACTGTCTTAAAAGACAC------------------------Attta----------------tttatttacttgagacaggg--tcttgctctgtcacccaggctggagtacagtggcacgatcttggctcactgcagccttgacctcctgggctaaagtcatgctcacatctcagcctcctgagtagttgggactacaggtacacgccgtcatgcccagctaatttttgtacacatggggtttcaccatgttgcccaggctggtcttgaactcctgtgctcaagtaatctgctcgctttagcctcccaaagtgctgggattacagatgagagccactgcacctggccATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223647247 605 - 227556264 gaaatgtccagaataggcaaaactatagagacagaaaatacatttgcggatgcctagaactgggggtgttgagtgagaggaggagggagtgtgaaaggatgtgaatgaggaagatattctgtgttccatgatgatcacatcatcatatgcatagtgattgcacaactctgtgaatatattaaaaatcacttagttgtatactttaaattggtgagctttatgttatgtgacttttatctcaata------TTAAAATCCAAGGAAGGGCAAATTTAT-GTTGTTTTTGGCTTTTAAGAAACTGTCTTAAAAGACAC--------------------Atttattta----------------tttatttacttgagacaggg--tctcgctctgtcacccaggctgaagtgcagtggcatgatcttggctcactgcagccttgacctcccgggctcaagtgatgctcacatctcagcctcctgagtagttgggactacaggtacatgccgtcatgcccagctaatttttgtagacatggggtttcaccatgttgcccaggctggtcttgaactcctgtgctcaagtaatctgctcgctttagcctcccaaagtgctgggattacagatgagagccactgcacctggccATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16698339 605 - 220367699 gaaatgtccagaataggcaaaactatagagacagaaaatacatTTGCGGTTGCCTAGAACTGGGGGTGTTGAgtgagaggaggagggagtgtgAAAGGATGTGAGTGAGGAAGATATTCTGTGTTCCATGATGATCACATCATCATATGCATAgtgattgcacaactctgtgaatatattgAAAATCACTtagttgtatactttaaattggTGAGCTTTATGTTATGTGACTTTTATCTCAATA------TTAAAATCCAAGGAAAGgcaaatttat-gttgtttttggCTTTTAAGAAACTGTCTTAaaagacac--------------------atttattta----------------tttatttacttgagacaggg--tctcgctctgtcacccaggctgaagtgcagtggcacgatcttggctcactgcagccttgacctcccgggctcaagtgatgctcacatctcagcctcctgagtagttgggactacaggtacatgccgtcatgcccagctaatttttgtagacatggggtttcaccatgttgcccaggctggtcttgaactcctgtgctcaagtaatcCGCTCgctttagtctcccaaagtgctgggattacagatgagagccactgcacctggccatc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82496470 623 + 85787240 gaaatgtccagaataggcaacactatagagacagaaaatacatttgcggttgcctagaactgggggtgttgagtgagaggaggagggagtgtgaaaggatg----tgaggaagatattctgtgttccatgatgatcacatcatcatatgcatagtgattgcacagctctgtgaatatattaaaaatcacttagttgtatactttaaattggtgagctttatgttatgtgacttttatctcaata------TTAAAATCCAAGGAAGGGCAAATTTATGGTTTTTTTTGGCTTTTAAGAAACTGTCTTAAAAGACCCatttacttatttatttatttatttattta----------------cttacttacttgagacagggtctctcgctctgtcacccaggctgaagtgcagtggcacgatcttggctcactgcagccttgagctcccgggctcaagtgatgctcacatctcagcctcctgagtagttgggactgtaggtacatgccgtcacgcccagctaatttttgtagatatggggtttcaccat-tagcccaggctggtcttgaactcctgtgcccaagtaatctgctcgctttagcctcccaaagtgctgggattacagatgagagccactgcacctggccATC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178765759 1597 + 195471971 I e canFam3.chr7 36334168 280 + 80974532 I e calJac3.chr19 14177877 749 - 49578535 I a score=2776774.000000 s hg38.chr1_KI270759v1_alt 171132 1033 + 425601 CCTTTTATACTTTGTTAATGGAGAAGTAAATAAA----CAGCCAGGGTGTAAACAATACATGCACCCCCATAGTTCAAAGGGACAATGGAGCATATGTGTTGATGTGTCTGAGAAAAACAGA-AAAAATGCT-TGTCCCTGGAATGATGGAAAGAATTGTTACACCTTGAGAGGAGAGG--TCAAGGGTGGAAGTCTGAAACAGGTGTGGGAGATGATATTTCTAAGAGTGAGCCAGTACGTTTCTGGCAAAATAAAGACTTTAGCAGGCTACTAGTTTGTAAAAATTAAACTGCAAAACTGGAGCTGG-TTTCACCCTTATTTTTTAATTATGTGGGATTAGTCATTTGTGCTTGATGCTCCCTCTTAGCTCAGCCCCATTTCTCTTTTCTAAATAAAAAACACTTGGTTCTAAATCCTGGCTTAGAAAGCATAT-TTTTGAAGCTCAAGACAGAAAATTCATTTGtttgtgcattcagcaaatacttttcaag-catgcactgtgtgccgggcactgtcccaggcacctgagacacactggggaaccaagacgaagattcctgccttcaggcagcttagatcctggtgggggtgggggataggaaggggcagagacagatcatccaccacaaacacagtaggttagtcaatcctgtggcagattggaaggtgataaatgctatggagaaaaaagaacaaggtagcgcaggta-cggaagtggaatggtgcaggtgg-catg--------agtagccagggtccataacatggtgagatttgggcagaggcatagaggaagtgggggagctgaaccaagcaggtgtctggatatctctgagggaaaagcattcccagcagagggaacagcaaggttaaagg-tttgaagggagagcgggcctgtcatgttcaaggaacagcaaggagtccaggttggctggaaaa--gagaccgaatggtagcagagcaagtcggggaagtctcaggagggtcagagtctatagggccta----ggaggccattgtaagtacttggcct-tttT-AACAatttaaatgtaat s panTro4.chr1 224923513 1031 + 228333871 CCTTTTATACTTTGTTAATGGAGAAGTAAATAAA----CAGCCAGGGTGTAAACAATACATGCACCCCCATAGTTCAAAGGGACAATGGAGCATATGTGTTGATGTGTCTGAGAAAAACAGA-AAAAATGCT-TGTCCCTGGAATGATGGAAAGAATTGTTACACCTTGAGAGGAGAGG--TCAAGGGTGGAAGTCTGAAACAGGTG--GGAGATGATATTTCTAAGAGTGAGCCAGTACATTTCTGGCAAAATAAAGACTTTAGCAGGCTACTAGTTTGTAAAAATTAAACTGCAAAACTGGAGCTGG-TTTCACCCTTATTTTTTAATTATGTGGGATTAGTCATTTGTGCTTGATGCTCCCTCTTAGCTCAGCCCCATTTCTCTTTTCTAAATAAAAAACACTTGGTTCTAAATCCTGGCTTAGAAAGCACAT-TTTTGAAGCTCAAGACACAAAACTCATTTGtttgtgcattcagcaaatacttttcaag-catgcactgtgtgccgggcactgtcccaggcacctgagacacactggggaaccaagatgaagactcctgccttcaggcagcttagatcctggtgggggcgggggataggaaggggcagagacagatcatccaccacaaacacagcaggttagtcaatcctgtggcagattggaaggtgataaacgctatggaggaaaaagaacaaggtagcgcaggta-cggaagtggaatggtgcaggtgg-cgtg--------agtagccagggtccataagatggtgagatttgggcagaggcatagaggaagtaggggaggtgaaccaagcaggtgtctggatatctctgagggaaaagcattcccagcagagggaacagcaaggttaaaag-tttgaagggagagcgggcctgtcatgttcaaggaacagcaaggagtccaggttggctggaaaa--gagaccgaatggtagcagagcaagtcggggaagtctccggagggtcagagtctatagggccta----ggaggccattgtaagtacttggcct-tttT-AACAatttaaatgtaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226281143 1016 - 229942017 CCTTTTATACTTTGTTAATGGAGAAGTAAATAAA----CAGCCAGGGTGTAAACAATACATGCACCCCCATAGTTCAAAGGGACAATGGAGCATATGTGTTGATGTGTCTGAGAAAAACAGA-AAAAATACT-TGTCCCTGGAATGATGGAAAGAATTGTGACACCTCGAGAGGAGAGG--TCGAGGGTGGAAGTCTCAAGCAGGTGCGGGAGATGATATTTCTAAGAGTGAGCCAGTACATTTTTGGCAAAATAAAGACTTTAGCAGGCTACTAGTTTGTAAAAATTAAACTGCAAAACTGGAGCTGG-TTTCACCCTTATTTTTTAATTATGTGGGATTAGTCATTTGTGCTTGATGCTCCCTCTTAGCTCAGCCCCATTTCTCTTTTCTAAATCAAAAACACTTGGTTCTAAATCCTGGCTTAGAAAGCATAT-TTTTGAAGCTCCAGACACAAAATTCATTTGtttgtgcattcagcaaatgctttccaag-catgcactgtgtgccgggcgctgtcccaggcacctgagacacactggggaaccaagacgaagattcctgcctttgggcagcttagatcctggtggggttgggggataggaaggggcagagacagatcatacaccacaaacacagtaggttagtcaatcctgtggcagattggaaggtgataaatgctatggagaaaaaagaacaaggtagcgcaggta-cagaagtggaatggtacgggtgg-cgtg--------ggcagccagggtccataagatggtgagatttgggcagaggcatagaggaagttggggaggtgaaccaagcaagtgtctggatgtctctgagggaaaagcatt-----------------caaggttaaagg-tttgaagggagagcgggcctggcatgttcaaggaacagcaaggagtccaggttggctggaaaa--gagactgaatggcagcagagcaagtcggggaagtctcaggagggtcagagtctatagggccta----ggaggccattgtaaggacttggcct-tttT-AACAatttaaatgtaat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140171312 1033 - 143122389 CCTTTTATACTTTGTTAATGGAGAAGTAAATAAA----CAGCCAGGGTGTAAGCAATACATGCACCCCCATAGTTCAAAGGGACAATGGAGCATATGTGTTGATGTGTCTGAGAAAAACAGA-AAAAATGCT-TGTCCCTGGAATTATGGAAAGAATTGTTACACCTTGAGAGGAGAGG--TCAAGGGTGGAAGTCTCAAACGGGTGTGGGAGATGATATTTCTAAGAATGAGCCAGTACATTTTTGGCAAAATAAAGACTTTAGCAGGCTACTAGTTTGTAAAAATTAAACTGCAAAACTGGAGCTGG-TTTCACCCTTATTTTTTAATTATGTGGGATTAGTCATTTGTGCTTGACACTCCCTCTTAGCTCAGCCCCATTTCTCTTTTCTAAATCAAAAACACTTGGTTCTAAATCCTGGCTTAGAAAGCATAT-TTTTGAAGCTCAAGACACGAAATTCATTTGtttgtgcattcagcaaatacttttcaag-catgcactgtgtaccgggcactgtcccaggcacctgagacgcactggggaaccaagacgaagattcctgccttcaggcagcttagatcctggtgggggtgggggataggaaggggcagaggcagatcatacacggcaaacacagtgggttagtcaatcctgtggcagattggaaggtgataaatgctatggagaaaaaagaaaaaggcagcgcaggta-cagaagtggaatggtgcaggtgg-catg--------agtagccagggtccataagatggtgagatttgggcagaggcatagaggaagtgggggaggtggaccaagcaggtgtctggatatctctgagggaaaagcattcccagcagagggaacagcaaggttaaagg-tttgaagggagagcgggcctggcatgttcaaggaacagcaaggagtccaggttggctggaaaa--gagactgaatggtagcagagcaagtcggggaagtctcaggagggtcagagtctatagggccta----ggaggccattgtaaggacttggcct-tttT-AACGatttaaatgtcat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16885045 1033 - 229590362 CCTTTTATACTTTGTTAATGGAGAAGTAAATAAA----TAACCAGGTTATAAACAATACATGCATCCCCATAGCTCAAAGGAACAATGGAGCATATGTGTTGATGTGTCTGAGAAAAACAGA-AAAAATACT-TGTCCCTGAAATGATGGAAAGAATTGTTCCACCTTGAGAGGAGAGG--TGAAGGGTGGAAGTCTCAAATAGGTGTGGGAGATGGTATTTCTAAGAGTGAGCCAATACATTTTCAGCAAAATAAAGACTTTAGCAGGCTACTAGTTTGTAAAAATTATACTGCAAAACTGGAGCTGG-TTTCACCCTTATTTTTTGATTATGTGGGATTAGTCATTTGTGCTTGATGCTCCCTCTTAGCTCAGCCCCATTTCTCTTTTCTAAATCAAAAACACTTGGTTCTAAATCCTGGCTTAGAAAGCATAT-TTTTGAAGCTCAAGACACAAAATTCATTTGttcgtgcattcagcaaatacttttcagt-catgcaccgtgtgccgggcactgt-ccaggcacctgagacacactggggaaccaagatgaagattcctgccttcagggagcttagatcctggtgggggtgggggataggaaggggcagagacagatcgtacgccacaaacacagtgagtttgtcaatcccgtggcagcttgtaaggtgataaatgctatggaggaaaaagaacaaggtagtgcaggta-cggaagtggaatagtgtgggtgg-cgtg--------agtagctagggcccctaagatggtgagatttgggcagaggcatagaggaagtgggggaggtgaaccaagcagatgtctggatatctcggagggaaaagcattcccagcagaggaaacagcaaggttaaagg-ttggaagggagagcgggcctggcatgttcaaggaacagcaagaagtccaggttggctggaaaa--gaggccgagtgggagcagagcaagtcggtgaagtctcaggagggtcagagtctatagggtcta----ggaggccactgtgaagacttggcct-tttTAAACAatttaaatgtaat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223647852 1033 - 227556264 CCTTTTATACTTTGTTAATGGAGAAGTAAATAAA----CAACCAGGGTATAAACAATACATGCATCCCCATAGCTCAAAGGAACAATGGAGCATATGTGTTGATGTGTCTGAGAAAAACAGA-AAAAATACT-TGTCCCTGAAATGATGGAAAGAATTGTTCCACCTTGAGAGGAGAGG--TGAAGGGTGGAAGTCTCAAATAGGTGTGGGAGATGGTATTTCTAAGAGTGAGCCAATACATTTTCAGCAAAATAAAGACTTTAGCAGGCTACTAGTTTGTAAAAATTATACTGCAAAACTGGAGCTGG-TTTCACCCTTATTTTTTAATTATGTGGGATTAGTCATTTGTGCTTGATGCTCCCTCTTAGCTCAGCCCCATTTCTCTTTTCTAAATCAAAAACACTTGGTTCTAAATCCTGGCTTAGAAAGCGTAT-TTTTGAAGCTCAAGACACAAAATTCATTTGttcgtgcattcagcaaatacttttcagt-catgcaccgtgtgccgggccctgt-ccaggcacctgagacacactggggaaccaagatgaagattcctgccttcagggagcttagatcctggtgggggtgggggataggaaggggcagagacagatcatacgccacaaacacagtgggtttgtcaatcccatggcagcttgtaagatgataaatgctatggaggaaaaagaacaaggtagtgcaggta-cggaagtggaatgatgtgggtgg-cgtg--------agtagctagggcccctaagatggtgagatttgggcagaggcatagaggaagtgggggaggtgaaccaagcagatgtctggatatctcggagggaaaagcattcccagcagaggaaacagcaaggttaaagg-ttggaagggagagcaggcctggcatgttcaaggaacagcaaggagtccaggttggctggaaaa--gaggccgagtgggagcagagcaagtcggtgaagtctcaggagggtcagagtctatagggtcta----ggaggccattgtaaggacttggcct-ttgttAACAatttaaatgtaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16698944 1033 - 220367699 ccTTTTATACTTTGTTAATGGAGAAGTAAATAAA----CAACCAGGGTGTAAACAATACATGCATCCCCATAGCTCAAAGGAACAATGGAGCATATGTGTTGATGTgtctgagaaaaacaga-aaaaatact-tgTCCCTGGAATGATGGAAAGAATTGTTCCACCTTGAGAGGAGAGG--TGAAGGGTGGAAGTCTCAAACAGGTGTGGGAGATGGTATTTCTACCAGTGAGCCAGTACATTTTCAGCAGAATAAAGACTTTAGCAGACTACTAGTTTGTAAAAATTAAGCTGCAAAACTGGAGCCGG-TTTCAcccttaatttttaattatgtggGATTAGTCATTTGTGCTTGATGCTCCCTCTTAGCTCAGccccatttctcttttctaaatcAAAAACACTTGGTTCTAAATCCTGGCTTAGAAAGCATAT-TTTTGAAGCTCAAGACACAAAATTAATTTGTTCGTGCATTCAGCAAATACTTCTCAGT-CATGCACCGTGTGCCGGGCCCTGT-CCAGGCACCTGAGACACACTGGAGAACCAAGATGAAGAttcctgccttcagggagcttaGATCCTGGTGGGGGCGGGGGATAGGAAGGGGCAGAGACAGATCATACGCCACAAACACAGTGGGTTTGTCAATCCCGTGGCAGCTTGGAAGGTGATAAATGCTATGGAGGAAAGGGAACAAGGTAGTGCAGGTA-CGGAAGTGGAATAGTGTGGGTGG-CGTG--------AGTAGCTAGGGCCCCTAAGAtggtgagatttgggcagaggcATAGAGGAAGTGGGGGAGGTGAACCAAGCAGGTGTCTGGATATCTCTGAGGGAAAAGCATTcccagcagaggaaacagcaaggtTAAAGG-TTGGAAGGGAGAGCGGGCCTGGCATGttcaaggaacagcaaggagtCCAGGTTGGCTGGAAAA--GAGACCGAGTGGGAGCAGAGCAAGTCGGTGAAGTCTCAGGAGGGTCAGAGTCTATAGGGTCTA----GGAGGCCATTGTAAGGACTTGGCCT-TTGTTAACAATTTAAATGTAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82497093 1033 + 85787240 CCTTTTATACTTTGTTAATGGAGAAGTAAATAAA----CAACCAGGGTGTAAACAATACATGCATCCCCATAGCTCAAAGGAACAATGGAGCATATGTGTTGATGTGTCTGAGAAAAACAGA-AAAAATACT-TGTCCCTGGAATGATGGAAAGAATTGTTCCACCTTGAGAGGAGAGG--TGAAGGGTGGAAGTCTCAAACAGGTGTGGGAAATGGTATTTCTAAGAGTGAGCCAGTACATTTTCAGCAAAATAAAGACTTTAGCAGGCTACTAGTTTATAAAAATTATACTGCAAAGCTGGAGCTGG-TTTCACCCTTATTTTTTAATTACATGGGATTCGTCATTTGTGCTTGATGCTCCCTCTTAGCTCAGCCCCATTTCTCTTTTCTAAATCAAAACCACTTGGTTCTAAATCCTGGCTTAGAAAGCATAT-TTTTGAAGCTCAAGACACAAAATTCATTTGttcgcgcattcagcaaatacttttcagt-catgcactgtgtgccgggcactgt-ccaggcacctgagacacactggggaaccaagatgaagattcctgccttcagggagcttagatcctggtgggggtgggggataggaaggggcagaggcagatcatacgccacaaacacagtgggtttgtcaatcctgtggcagcttggaaggtgataaatgctatggagaataaagaacaaggtagtacaggta-cggaagtggaatgatgtgggtgg-cgtg--------agtagctagggcccctaagatggtgagatttgggcagaggcacagaggaagtgggggaggtgaaccaagcaggtgtctggatatctctgagggaaaagcattcccagcagaggaaacagcaaggttaaagg-ttggaagggagagcggacctggcatgttcaaggaacagcaaggagtccaggttggctggaaaa--gagaccgagtgggagcagagcgagtcggtgaagtctcaggagggtcagagtctatagggtcta----ggaggccattgtaaagacttggcct-tttTAAACAatttaaatgtaat i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36334448 983 + 80974532 CTTCTTATACTTTGTTGATAGAAAAGTAAATCAACAGTCAGCCAGAGTATAAACAATAGATGAACCATCATGGGGCAAAGAGAGGACGGAGGGTGTGGGT-----TGTCCGGGAAAAACAGACAAAAACACTCTTTACTTGAAATAACCGATAGAATGATTGCACCTGGATGGGAGAGGGAGAAAGAGTGGAAGTCTGAGATGGGTACGTGACATGATATTTCTAAGAGTGGGCCAGGACAATTTTGGCAAAATAG----TTTAGCAGTCTACTACTTTGTAGAAATTAAACTGCCAAACTGGAGCTAATTTTCAGCCTTGGTTTTTAATTCC-TGGGATTATTGACTTGTACTTGATG------CTTAGTCCTGTCTCATTTCTCCTTTCCTAATTGAAAAAATTCTGTTCCAAGTCTTGACTCTGAGGGTTCATGTTTTGAAGCTTGAGAGACAAAattcatt--------cattacacaaatatttttcaggtccttctctgtgtg--aggcactgtctcaggtgcctgggacacact--------------------------tccatgaagc--agagtctactatgtgtg-----------------gagacagaccattcacggcagacaggctaagtcagttag----gtagtagg-tagagggtgatagatagtatgaa--ataaaggaaaagg-agaacaggtattggaaatagattggcacaggtggttgtgttacatacagtagccaggactcatcaaaagtcaaggcttgagcaaagacataaagaaagtgagggtgttg-accaggcgggtatctgggcatctcccagaaaaaagcattcccagcagacagaacaacaagatcacaggctctggggtgagaatagacctgtcatgttcaagggtcagcttgcagtgcaggttgaacaagagactgaggaagaatgggaggtgaggaaatcagagaggactcaggagggtctaattatgtagaatctacattggacgccattatgaggactttgcctatttttaaaaattgaaatgtcat i canFam3.chr7 I 280 C 0 e mm10.chr1 178765759 1597 + 195471971 I e calJac3.chr19 14177877 749 - 49578535 I a score=1466600.000000 s hg38.chr1_KI270759v1_alt 172165 591 + 425601 tcatataccataatatttgcccctttgaggcatataatttactggtttttagtctagtcatcatactgtgcaa-------------------gcagaacattttcttcacccc-aaaaataaactttata--ccataa--acacacacccacacacgtccctcttc-cag-ccgctggcacccactcatcaacattc-------tggctctacggacttgcc-tattctggacatttcatattaatggaatcatacaatacgtgaacttctgtgtctgctttctttcacgtcacataatggtttcaaagtccatccatgttgtaacaaacattattagcaccta-ttcctttctgtgtctgactagtattccatggtatggatagaccagtttttggtgatgcattcatcagtggatggacatctgggttttcccacg-tttggctgttgtgagtgatgctgtgatgaacgttcatatccacgtttc--tgtgggggtgtgtttttc--tttcttgggtgtctgccgaggagtggaaGGACTTGAGCATTgcttt-tctcct-gtgtgaaatgggaaccatcgcagtgttttcaccaggatctgactcgc----attttttttttttttt---------gagacgg s panTro4.chr1 224924544 596 + 228333871 tcatataccataatatttgcccctttgaggcatataatttgctggtttttagtctagtcatcatactgtgcaa-------------------gcagaacattttcttcacccc-aaaagtaaactttata--ccataa--acacacacccacacacgtccctcttc-cag-ccgctggcacccactcatcaacattc-------tggctctacggacttgcc-tattctggacatttcatattaatggaatcatacaatacgtgaacttctgtgtctgctttctttcacgtcacataatggtttcaaagtccatccatgttgtaacaaacattattagcaccta-ttcctttctgtgtctgactagtattccatggtatggatagaccactttttggtgctgcattcatcagtggatggacatctgggttttcccacg-tttggctgttgtgagtgatgctgtgatgaacgttcatatccacgtttc--tgtgggggtgtgtttttc--tttcttgggtgtctgccgaggggtggaaGGACTTGAGCATTgcttt-tctcct-gtgtgaaatgggaaccatcgcagtgttttcaccaggatctgacttgc----attttttttttttttt----tttttgagacgt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226282159 593 - 229942017 tcatataccataatatttgcccctttgagttgtataatttactggtttttagtatagtcatcatcctgtgcaa-------------------gcagaacattttcatcacccc-aaaaataaactttata--ccataaacacacacacccacacacgtccctcttctcag-cccctggcacccactaatcaacattc-------tggctctacggacttgcc-tattctggacgtttcatattaatggaatcatacgatacgtgaacttctgtgtctgctttctttcacgtcacataacggtttcaaagtccatccatgttgtaacaaacattattagcacctg-ttcctttctgtgtctgactagtattccgcggtatggatagaccactttttggtgatgcattcatcagtgggtggacatctggg-tttcccacg-ttttcctgttgtgaatagtgctgggatgaacgttcctgtacacgtttc--tgt-ggggtgtgtttttc--tttcttgggtgtctgccgaggagtggaaGCACTTGAGCATTgcttt-tctcct-gtgtgaaatgggagcca-cgcagggtttttaccaggatctgacttgc----attttttttttttttt-------ttgagatgg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140172345 596 - 143122389 tcatataccataatatttgcccctttgaggcgtataatttactggtttt-----tagtcatcatactgtgcaa-------------------gcagaacattttcatcacccc-aaaaatgaac-ttata--ccataa--acacacacccacacacgtccctcttcccag-cccctggcacccactaagcaacattc-------tggctctatggacttgcc-tattctggacatttcatattaatggaatcatacaatatgtgaacttctgtgtctgttttctttcacatcacataatggtttcaaagtccatccacgttgtaacaaacattattagcacctg-ttgctttctgtgtccgactagtattccatggtatggacagaccactttttggtgatgcattcatcggtggatggatatctgggttttcccacgttttggttgttgtgaataatgctgcgatgaacgttcacgtacacgtttc--tgtgggggtgtgtttttc--cttcttgggtgtctgccaaggagtggaaGGACTTGAGCATTgcttt-tctcct-gtatgaaatgggagccatcgcagggttttcaccaggatctgacttgc----attttttttttttttttttttttttgagacag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16886078 602 - 229590362 tcatataccataatatttgctcctttgaagagtataacttacttgtttttagtatagtcatcatattgtgcaa-------------------ccagaacattttcatcacccc-aaaaagcaatttcata--ccataaacacacacgcccacccacattcctcttcccag-cccctggcacccgctaatcaacattc-------tggctctacagacttgcc-tattctggacatttcatattaatggaataatacaatatgtgaacttctgtgtctgttttcgttcacttcacatcatgatttcaaagtccatccatgtggtggcaaacattattagtaccta-atcctttctgtgtctgactagtagtccacagtacggatagaccactgtttggtgatgcattcatccgtggatggacatctgggttctcccacactttggctattgtgaataatggtgcgatgaacgttcatatacaagtttc--tgtgggggcgtgtttttc--tttcttgggtgtctgctgaggagtagaaggacttgggcatTgctttttctcct-gtgtgaaatgggaaccatcgcagggttttcaccaggatctgacttgctttttttttttttttttttt-------ttgagacag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223648885 597 - 227556264 tcgtgtaccataatatttgctcctttgaagagtataacttgcttgtttttagtatagtcatcatattgtgcaa-------------------ccagaacgttttcatcacccc-aaaaagcaatttcata--ccataaacacacacgcccacacgcatccctcttcccag-cccctggcacccgctaatcaacattc-------tggctctacagacttgcc-tattctggacatttcatattaatggaatcatacaatatgtgaacttctgtgtctgttttcgttcacttcacatcatgatttcaaagtccatccatgtggtaacaaacattattagtaccta-ttcctttctgtgtctgactagtagtccacagtacggatagaccactgtttggtgatgcattcatccgtggatggacatctgggttctcccacactttggctattgtgaataatggtgcgatgaacgttcatatacaagtttc--tgtgggggtgtgtttttc--tttcttgggtgtctgctgaggagtagaaggacttgggcatTgctttgtctcct-gtgtgaaatgggaaccatcgcagggttttcaccaggatctgacttgc-----ttttttttttttttt-------ttgagacag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16699977 597 - 220367699 TCGTATACCATAATATTTgctcctttgaagagtataactTGCTTGTTTTTAGTATAGTCATCATATTGTGCaa-------------------ccagaacattttcatcacccc-aaaaagcaATTTCATA--CCATAAACACCCACGCCCACACGCATccctcttcccag-cccctggcacccgcTAATCAACATTC-------TGGCTCTACAgacttgcc-tattctggacatttcatattaatggaatcatacaatacgtGAACTTCTGTGTCTGTTTTCGTTGACTTCACATCATGATTTCAAAGTCCATCCATGTGGTAACAAACATTATTAGTACCTA-ttcctttctgtgtctgactAGTAGTCCACAGTACGGATAGACCTCTGTTGGGTGATGCATTCATCCGTGGATGGACATCTGGGTTCTCCCAcactttggctattgtgaataatggtgcGATGAACGTTCATATACAAGTTTC--TGTGGggatgtgtttttc--tttcttgggtGTCTGCTGAGGAGTAGAAGGACTTGGGCATTGCTTTTTCTCCT-GTGTAAAATGGGAACCATCGCAGGGTTTTCACCAGGAtctgacttgc-----ttttttttttttttt-------ttgagacag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82498126 589 + 85787240 tcatataccataatatttgctcctttgaagagtataacttacttgtttttagtatagtcatcatattgtgcaa-------------------ccagaacattttcatcacccc-aaaaagcaatttcata--ccataaacacacacacccacacacagccctcttcccag-cccctggcatccactaatcaacattc-------tggctctacggacttgcc-tattctggacatttcatattaatggaatcatacaatacgtgaacttctgtgtctgttttcgttcacttcacatcatgatttcaaagtccatccatgtggtaacaaacattattagtaccta-atcctttctgtgtctgactagtattccacagtacggatagaccactgtttggtgatgcatttatccatggatggacatctgggttctcccatgttttggctattgtgaataatggtgcgatgaacgttcacatacaagtttc--tgtgggggtgtgtttttc--tttcttgggtgtctcctgaggagtagaaggacttgggcatTgcttt-tctcct-gtgtgaaatgggagccatcgcagggttttcaccaggatctgacttgc------------tttttttt-------ttgagacgg i chlSab2.chr25 C 0 C 0 s mm10.chr1 178767356 568 + 195471971 tcacatatcaccatatatacccttt--aagtttagacttcagtagcttttagtaaattc--tgttttgtataaacatc---accattaa-ttccagaatacttatatcactcc-taagagaagtagtcta--ctttaca-ataagtcactccatcttttcctcctccgatccccctaccaatctcttatctgcatattccatgatggttctatggactggtc-tattctagtcat------gtgatggaatcatgta-----tgggtttctgtacatgcattctttttcttaactgtatggtcccaaa-tccatccatattgtgacctatattgctaattcat------tttttatgtctttgtaatattccattgtgtgcacataccacacattgcttgtctatttatttgtat-tgaacattaggtggtt---atgcttt--ctgccattaataatgcttctgt-aatggcagggcacaggtttt--tgtgtgaatgtaccttttaatttatatagtatgtatcccggagtggaaG-------GCCTTACCTT-CCTCCTCACATGAAGTGGAAGCCATAGCAGGTTTCTTACC-TGTTCTGGCCTTC----ACACTAG------------------------- i mm10.chr1 I 1597 I 33 s canFam3.chr7 36335431 565 + 80974532 tcacctaccataatcctagcccttttgaagcagacaatccagtggtttttcgtatattcgcagagttgtgcaaccatctctaccatcaatttccagaacattgtaatcaccccaaaaaagaagccccatggcctataagcaatcattccctactgtcccccccctcccag-cctctggcaaacactaatctgcattc-------tgactctatggttttgccttgttctggaaatttcatattaatggaatcatacactctttgagcttctgtgtctggcttctttcacttaccaggatgtttcaaaggttcatccaggtt-tagcat---ctgttagtgcttagttcctttttctgatggaagaatattccattgtatggctatgccatattttgtttatccattcataaactgatgggcatttgggttcccctttg---tgactctcatgagtaaggttttcatgaacattggtgtaccaggtttggtgtgtgaatgtgttccta--tttcttcagtgtgtgtctgcaagtggaagaactctggt-ttgtttt---tcct-gtgtgcaat-------------gcgttttt-----gaggtga----------------------------------------- i canFam3.chr7 C 0 C 0 e calJac3.chr19 14177877 749 - 49578535 I a score=609826.000000 s hg38.chr1_KI270759v1_alt 172756 261 + 425601 agtcttgctctgtcgcccaggctggagtgcggtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggacta-----------caccacgtctggctaa-ttttttatatttgtagtacagatggggtttcaccgtgttagccaggatggtctcgatctcctgacttgtggtccacccgtatcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggc s panTro4.chr1 224925140 261 + 228333871 agtctcgctctgtcgcccaggctggtgtgcagtggcgcgatctcggctcactgcaagctccgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggacta-----------caccacgtctggctaa-ttttttatatttgtagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacttgtgatccacccgtatcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226282752 271 - 229942017 agtcttgctctgtcacccaggctggagtgcagtggtgcgatcttggctcactgcaacctctgcctcctgggttcacgccgttctcctgcctcagcctccccagtagctgggactacaggcgcccgccaccatgcccggctaa-ttttttatatttttagtagagacggggtttcaccgtgttagccaggatagtcttgatctcctgacttgtgatccacctgcgtcggcctcccaaagtgctgggattacaggtgtgaaccacc-tgcccggc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140172941 272 - 143122389 agtctcactctgtcgcccaggctggagtgcagtggtgtgatcttggctcactgcaacctccgcctcctgggtatacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccatcatgcctggctaa-ttttttatatttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgacttgtgatccacccgtgtcagcctcccaaagtgctgggattacaggcatgagccaccgcgcccggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16886680 271 - 229590362 agtctcg--ctgttgcccaggctggagtgcagtggcgtgatctcagctcactgcaagctccgcctcccaggttcacgccattctcccgcctcagcctcccaagtagctgggactacaggcgcccgccaccacgcctgggtaatttttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcaatctcctgacttgtgatccacccgcgtcagcctcccaaagtgctgggatgacaggcgtgagccaccgcacccggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223649482 271 - 227556264 agtctcg--ctgttgcccaggctggagtgcagtggcgtgatctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccacgcctggctaatttttttgtatttttagtagagatggggtttcaccatgttagccaggatggtctcaatctcctgacttgtgatctacccgcgtcagcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16700574 271 - 220367699 agtcttg--ctgtcgcccaggctggagtgcagtggcgcgatctcagctcactgcaagctccgcctccggggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcacgccaccacgcctggctaatttttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcaatctcctgacttgtgatctacccgcgtcagcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82498715 270 + 85787240 agtctcg--ctgttgcccaggctggagtgcggtggcgagatctcggcttactgcaacctccacctcctgggttcacaccattctcctgcctcagcctcctgagtagctgggactacaggcacctgccaccacgcccggctaa-ttttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacttctgatctacccgcgtcagcctcccaaagtgctgggatgacaggcgtgagccaccacgcccggc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178767924 33 + 195471971 I e canFam3.chr7 36335996 0 + 80974532 C e calJac3.chr19 14177877 749 - 49578535 I a score=2552.000000 s hg38.chr1_KI270759v1_alt 173017 1 + 425601 c s panTro4.chr1 224925401 1 + 228333871 c i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226283023 1 - 229942017 c i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140173213 1 - 143122389 c i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16886951 1 - 229590362 c i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223649753 1 - 227556264 c i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16700845 1 - 220367699 c i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82498985 1 + 85787240 c i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36335996 1 + 80974532 t i canFam3.chr7 C 0 C 0 e mm10.chr1 178767924 33 + 195471971 I e calJac3.chr19 14177877 749 - 49578535 I a score=146266.000000 s hg38.chr1_KI270759v1_alt 173018 46 + 425601 ctgacttgcattttaaaagggtcgctttggctgcctgttgggtatc- s panTro4.chr1 224925402 46 + 228333871 ctgacttacattttaaaagggtcgctttggctgcctgttgggtatc- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226283024 46 - 229942017 ccgacttgcgttttaaaggggtcactttggctgcctgttcggaatc- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140173214 46 - 143122389 ctgacttgcattttaaaagggtcgctttggctgcctgttgggtatc- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16886952 45 - 229590362 ctgacttgcattttaaaagggtcgctttggctgcctgttggg-atc- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223649754 45 - 227556264 ctgacttgcattttaaaagggtcgctttggctgcctgttggg-atc- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16700846 45 - 220367699 ctgacttGCATTTTAAAAGGGTCGCTTTGGCTGCCTGTTGGG-ATC- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82498986 45 + 85787240 ctgacttgcattttaaaagggtggctttggctgcctgttgga-acc- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14178626 46 - 49578535 ctgacttgtattttaagaggattgctttggctgcctgttgagaatt- i calJac3.chr19 I 749 C 0 s canFam3.chr7 36335997 46 + 80974532 ctgacttgcattttgaagggatcactctgcctgtccattgag-aaca i canFam3.chr7 C 0 C 0 e mm10.chr1 178767924 33 + 195471971 I a score=380029.000000 s hg38.chr1_KI270759v1_alt 173064 118 + 425601 gactgtg-ggtgaacagtgagtagcaggaaggaaacc-aggcaggatgtgatggcagcgacgtgggtgag-agtggtgatggatcagaccagggtgggagcagtg-----aaggggttga--------cagatt s panTro4.chr1 224925448 118 + 228333871 gactgtg-ggtgaacagtgagtagcaggaaggaaacc-aggcaggaggtgatggcagcgacgtgggtgag-agtgatgatggatcagaccagggtgggagcagtg-----aaggggttga--------cagatt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226283070 118 - 229942017 gactgtt-ggtgaacagtgagtagcaggaaggaaacc-aggcaggaggtgatggcagcgacgtgggtgag-agtgatgatggatcacaccagggtgggagcggtg-----aacgggttga--------CAGAtt i ponAbe2.chr1 C 0 I 1730 s nomLeu3.chr5 140173260 118 - 143122389 gactgtg-ggtgaacagtgagtagcaggaaggaaacc-aggcaggaggtgatggcagcgacgtgggtgag-agtaatgatggatcagaccagtgtgggagcagtg-----aaggggttga--------cagatt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16886997 118 - 229590362 gactgtg-ggtgaacagtgagtagcaggaaggaaacc-aggcaggaggtgatggcagcgacgtgggtgag-agtgacgatggatcagaccagagtgggagcagtg-----aaagggttga--------cagatt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223649799 118 - 227556264 gactgtg-ggtgaacagtgagtagcaggaaggaaact-aggcaggaggtgatggcagcgacgtgggtgag-agtgacgatggatcagaccagagtgggagcagtg-----aaagggttga--------cagatt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16700891 118 - 220367699 GACTGTG-GGTGAACAGTGAGTAGCAGGAAGGAAACC-AGGCAGGAGGTGATGGCAGCGACGTGGGTGAG-AGTGACGATGGATCAGACCAGAGTGGGAGCAGTG-----AAGGGGTTGA--------CAgatt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82499031 118 + 85787240 gactgtg-ggtgaacagtgagcagcaggaaggaagcc-aggcaggaggtgatggcggcgacgtgggtgag-agtgacgatggatcggaccagggtgggagcagtg-----aaggggttga--------cagatt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14178672 89 - 49578535 gacggtg-ggtgaacagtgagt----ggaaggaaacc-agtcaggaggtgatggcagtgacgtgg--------------------------ggctgggagcagtg-----aaggggttga--------tggatt i calJac3.chr19 C 0 C 0 s mm10.chr1 178767957 121 + 195471971 gacagtg-ggtaggtaataatgagtggaaatcagacc-agttaggagctgattgcagtggttcaggtgag-agga--gaggtctcagaccaggacaggagctgtatgtgcggagcatagt--------cacatt i mm10.chr1 I 33 C 0 s canFam3.chr7 36336043 125 + 80974532 gactcttcagtgaaggcccagtagaagtagggaggccttgtcagactatcat----gtgattggggtgagaaatgatggtggctcagatcagggtgagagcagtg-----gagatgctgaaaagtggtcaggtt i canFam3.chr7 C 0 C 0 a score=1490612.000000 s hg38.chr1_KI270759v1_alt 173182 525 + 425601 ctggatgtattttgaagatagccaataaaattcttgattactgtgagagaaagtaaggttgtgagaatcagcccgaggattttggcataacctgttggaaagatggagctgccattaaatgagatgg-ggaggggtcctgaggga--tcaggagcgcagct-gaatgcaccgaggtggagatgcctactagacat-caaga-ggagacgtccagcagagggctggatggatgagtctggaattcaggaagcagcctgggctgcagatataaatttgggaatcattggcatctagatggcatttagaacc-ctgtaactgagtaagatcactaaggCTCCCATTTATTC--AAAGGACAAAACAACATAAATGTTGACAGAGAGTAATAATCTTTTCTATTTATTGAGTTCCAACAGTGAGCTCCTGTTATCACTAAAAACAGACATCGCAGATAAGCTTCTCC---AGAAATACATATTTCAACCTGGTTGAGCTATAGGCACCCAGGGTAT-ATCTACAGAAGCCAGGTATTAATAT s panTro4.chr1 224925566 525 + 228333871 ctggatgtattttgaagatagccaataaaattcttgattactgtgagagaaagtaagggtgtaagaatcagtccgaggattttggcataacctattggaaagatggagctgccattaaatgagatgg-ggaggggtcatgaggga--tcaggagcgcagct-gaatgcaccgaggtggagatgcctattagacat-caaga-ggagacgtccagcagagggctggatggatgagtctggagttcaggaagcagcctgggctgcagatataaatttgggaatcattggcatatagatggcatttagaacc-ctgtaactgagtaagatcactaaggCTCCCATTTATTC--AAAGGACAAAACAACATAAATGTTGACAGAGAGTAATAATCTTTTCTATTTATTGAGTTCCAACAGTGAGCTCCTGTTATCACTAAAAACACACACCGCAGATAAGCTTCTCC---AGAAATACATATTTCAACCTGGTTGAGCTATAGGCACCCAGGGTAT-ATCTACAGAAGCCAGGTATTAATAT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140173378 526 - 143122389 ctgggtgtattttgaagacagccaataaaattcttgatcactgcgagagaaagtaaggatataagaatgagtcccaggattttggcataacctgttggaaagatggagctcccattaaatgagatgg-ggaggggtcacgaggga--tcaggagcgcagctggaatgcaccgaggtggagatgcctatcggacat-caaga-ggagatacccagcagagggctggatggatgagtctggagttcaggaagcagcctgggctgcagatataaatttgggaatcattggcatatagatggcatttagaacc-ctgaaactgagtaagatcactaaggCTCCCATTTATTC--AAAGGACAAAACAACATAAATGTTGACAGAGAGTAGTAATCTTTTCTATTTATTGAGTTCCAACACCGAGCTCCTGTTATCACTGAAAACACACATCGCAGATAAGCTTCTCC---AGAAATACATATTTCAACCCGGTTGAGCTATAGGCACCCAGGGTAT-ATCTGCAGAAGCCAGGTGTTAGTAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16887115 523 - 229590362 ctggatgtattttgaagacagccaataaaattcttgattactgtgagagaaagtaaggatataagaatcagtcccagggttttggcataacctattggaaagatggagctgccattaaatgagaggg-ggaggggccatgaggga--tcaggagcgcggtttgaataca--gaggtggagatgcccatcagacat-caaga-ggagacatcaagcagagggctggatggatgagtctggagttcaggaagcagcctgggctgcagacataaatttgggaattattggcagatagatggcatttagaa-c-ctgaaactgagtaagatcactaaggCTATCATTTATTC--AAAGGACAAAACAACATAAATGTTGACATAGAGTGGTAATCTTTTCTATTTATTGAATTCCAACAATGAGCTCCTGTTATCACTGGAAACACACATCGCAGATAAGCTTCTCC---AGAAATACGTATTTCAACCTGGTTGAGCTATAGGCACCCACGGTAT-ATCTACAGAAGTCATGTATTAATAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223649917 523 - 227556264 ctggatgtattttgaagacagccaataaaattcttgattactgtgagagaaagtaaggatataagaatcagtcccagggttttggcataacctattggaaagatggagctgccattaaatgagaggg-ggaggggccatgaggga--tcaggagcgcggtttgaataca--gaggtggagatgcccatcagacat-caaga-ggagacatcaagcagagggctggatggatgagtctggagttcaggaagcagcctgggctgcagacataaatttgggaattattggcatatagatggcatttagaa-c-ctgaaactgagtaagatcactaaggCTATCATTTATTC--AAAGGACAAAACAACATAAATGTTGACATAGAGTGGTAATCTTTTCTATTTATTGAATTCCAACAATGAGCTCCTGTTATCACTGGAAACACACATCGCAGATAAGCTTCTCC---AGAAATACGTATTTCGACCTGGTTGAGCTATAGGCACCCACGGTAT-ATCTACAGAAGTCATGTATTAATAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16701009 523 - 220367699 ctggatgtattttgaagACAGCCAATAAAATTCTTGATTACTGTGAGAGAAAGTAAGGATAGAAGAATCAGTCCCAGGGTTTTGGCATAACCTATTGGAAAGATGGAGCTGCCATTAAATGAGAGCG-GGAGGGGCCATGAGGGA--TCAGGAGCGCGGTTTGAATACA--GAGGTGGAGATGCCCATCAGACAT-CAAGA-GGAGACATCAAGCAGAGGGCTGGATGGatgagtctggagttcaggaagcagcctgggctgcagacaTAAATTTGGGAATTATTGGCATGTAGATGGCATTTAGAA-C-CTGAAACTGAGTAAGATCACTAAGGCTATCATTTATTC--AAAGgacaaaacaacataaatgttgACATAGAGTGGtaatcttttctatttattgaatTCCAACAATGAGCTCCTGTTATCACTAGAAACACACATCGCAGATAAGCTTCTCC---AGAAATACATATTTCGACCTGGTTGAGCTATAGGCACCCACGGTAT-ATCTACAGAAGTCATGTATTAATAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82499149 526 + 85787240 ctggatgtattctgaagatagccaataaaactcttgattactgtgagagaaagtaaggatataagaatcagtcccaggattttggcataacctattggaaagatggagctgccattaaatgagaggg-ggaggggtcatgaggga--tcaggagcgtggtttgaatacactgaggtggagatgcccatcagacat-ccaga-ggagacgtcaagcagagggctggatggatgagtctggagttcaggaagcagcctgggctgcagacataaatttgggaattattggcatatagacggcattcagaacc-ctgaaactgagtaagatcactaaagCTACCATTTATTC--AAAGGCCAAAACAACATAAATGTTGACAGAGAGTGGTAATCTTTTCTATTTATTGAATTCCAACAATGAGCTCCTGTTATCACTAGAAACACACATCGCAGATAAGCTTCTCC---AGAAATACATATTTCGACCTGGTTGAGCTATAGGCACCCACGGTGT-ATCTACAGAAGTCATGTAGTAATAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14178761 508 - 49578535 ccggatgtattttgaagatagccaataaaattcttgatgactgaga---------------taagactaggtcccagggttttggcacagcctattggaaagatggagctgccattaaatgagatgg-gga-gggtgatgaggga--ccaggagtgcagtttgaatccacggaggtggagatggccgtagacctc-caaga-ggagatgtcgagcagagggctgcgtgagcgagtctgg-gttcaggaagcagtctgggctgcagatatagatgtggggactgttggcctatagatggcatggagaatc-gtgaaactgagtaagatcacgaaggTTCCCATTTATTC---AAGGACAGAACAAAATAAATGTTGACAGACAGCAGTAATCTTTTCTGTTTACTGAGGTCCAACAGTGAGCTCCTGTTATAACTAAAAACACACATCACTCATAAGCTTCTCC---AGAAATACATATTTCAACGTGGTCGAGTTATAGGCACCTAGGGTGC-GTCTGCAAAAGTCATTTATTAGTAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178768078 513 + 195471971 tgggacatattgtaaaggcagccaggagagtttcttcttagtg-aagtaaaagtgggcagggaggagcta-----aggactttggctccatctgctagaaggaaggggcagccatggagtggggtga-gagagccacacatgggc--tcaggagttccacttgcatagaccaaggttaagatggtcagcagacat-cctcagggagatgacaggcagg----cagataaatgggtctggagttcaggaagttgtctgtgctgcagatataaatttgggaatctctggcatgctgatgatatttagaaccaatgagGTAGAGTA--GTCACTGA-GTTCCCATTTGTTTTAAAGGGACAAAGCAGCCTGCTCGTTGAT--AGAGTTTTAGCCTTTTCTATGTACTGAGTTCCAACGATGACCTCATGTTA----TGAAAACATACATTAGAGAGAAGGTTCTCTCTAGAGAATGCG-ATTCCAACATGGTTAAACTACCGGC-CTCAGGGCATAAATTAGAGGATTTATTCATTTATAT i mm10.chr1 C 0 C 0 s canFam3.chr7 36336168 515 + 80974532 ctggatatatttcacag---------agaatttctgttt--cgtgagagaaggtgaggttataaagataaatccagagattttggcttgatcgcccagaaggatggagctgccattaggcgagatggaagaggcgccagaaaggaggtcgggaactccttt-caatgtg--gtgtgggagatgtccattagacatccggga-ggagccatcaagcaggcagttggataaatgagtctggagttcaggaaatagtctgggctggagatataaatttgggagtcattggcatagagatggtatttagagcc-atgaaatggagcaagatcaccaaggTCCCCATTTATTT--TAAGGACAAAATAACATATATGTGGATAGAGAGTGGTAATATTTTCTGTCTTTTGAGTTCTAACAATGAGCTCATGTTATAACTGAAAACATATATCACAGATAAGCTTCTCT---AGAAATGCATATTT-AATATGGATAAGCTACAGGCACCCAGGGTAC-TTGGACGGAAGTCATTCATCAACAC i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226283188 1730 - 229942017 I a score=1061695.000000 s hg38.chr1_KI270759v1_alt 173707 359 + 425601 CTTAGAGGCATATGCATCAATATCGTGTGAAGTCTTTTTTGTTAGCTCT--TTTCTGATTATGCTTTCAGAGTTTTTTTGTTGTTGTTGTTATATTTTTGT------------------------------------------------------TCTCCCATGTATACCT-----------------TGGTTTGTGATCAGTGTGTAAAGGAGGAGGAATGGTTGTTTGGTTGAGACATTTGCAAATAGTAAGCAGTCACCTTACCTAACTTGGCTAATTTGCATTG--TTTCCATACAGAGAATGTAGTT-TGACAGTCAAGGATGATAGAAAGTCAGAGGATGATAGAAAACAATCCTTTCTTCATACAGATTAAGAAGAAGAAA----TGAATAATCTAAAGAAAGAAATAACAACAAGAGAC---AGATGggatgct s panTro4.chr1 224926091 353 + 228333871 CTTAGAGGCATATGCGTCGATATTGTGTGAAGTCTTTTTTGTTTGCTCT--TTTCTAATTATGCTTTCAGAGTTTT---GTTGTTGTTGTTATATTTTTGT------------------------------------------------------TCTCCCATGTATACCT-----------------TGGTTTGTGATCAGTGTGTAAAGGAGGAGGAATGGTTGTTTGGTTGAGACATTTGCAAATAGTAAGTAGTCACCTTACCTAACTTGGCTAATTTGCATTG--TTTCCCTACAGAGAATGTAGTT-TGACAGTCAAGGATGATAGAAAGTCAGAGGATGATAGAAAACAATCCTTTCTTCATACAGATTAAGAAGAAGAAA----TGAATAATCTAAAGAAAGAAATAACAA---GAGAC---AGATGggatgct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226284918 352 - 229942017 CTTAGAGGCATATGCATCAATATTGTGTGAAGTCTTTTTTGTTAGCTCTTCTTCTTAATTTTGCTTTCAGAGTTTT---GTTGTGGTTATTATATTTTTGT------------------------------------------------------TCTCCCACGTATACCT-----------------T-GTTTGTGATCAGTGTGTAAAGGAGGAGGAATGGTTGTTTGGTTGAGACATTTGCAAATAGTAAGTAGTCACCTTACCTAACTTGGCTAATTTGCATTG--TTTCCATACAGAGAAAGTAGTT-TGATAGTCAAGGGTGATAGAAAGTCAGAGGATGATAGAAAACAATCCTTTCTTCATACAGAATAAGAAGAAGAAA----TGAA-----TAAAGAAAGAAATAACAACAAGAGAC---ACATGGGATGCT i ponAbe2.chr1 I 1730 C 0 s nomLeu3.chr5 140173904 357 - 143122389 CTTAGAGGCATATGCATCAATATTGTGTGAAGTCTTTTTTGTTAGCTCT--TTTCGAATTATGCTTTCAGAgtttt---gttgttgttgttatgtttttgt------------------------------------------------------tCTCCCAGGTGTACCT-----------------TGGTTTGTGATCAGTGTGTAAAGGAGGAGGAACGGTTGTTTGGTTGAGACATTTGCAGATAGTAAGTAGTCACCTTACCTAACTTGGCTAATTTGCATTG--TTTCCATACAGAGAAAGTAGCTGTGACAGTCAAGGATGATAGAAAGTCAGAGGATGATAGAAAACAATCCTTTCTTCATACAGAATAAGAAGAAGAAA----TGAATAATCTAAACAAAGAAATAACAACAAGAGAC---ACATGggatgct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16887638 352 - 229590362 CTTAGAGGCATATGCATCGATATTGTGTGAAGTCTTTTTTGTTAGCTGT--TTTCTAATGATGCTTTC-GAGTT------TTGTTGTTGTTCTATTTTTGT------------------------------------------------------TCTCCCATGTATACCT-----------------TGGTTTGTGATCAGTGTGTAAAGGAGGAGGAATGGTTGTTTGGTTGAGACATTTGCAAATAGTAAGTAGTCACCTTACCTAACTTGGCTAATTTGCATTG--TTTCCATACAGAGAAAGTAGTT-TGACAGTCAAGGATGATAGAAAGTCAGAGGATGATAGAAAACAATCCTTTCTTCATACAGGATAATAAGAAGAAA----TGAATAATCTAAAGAAAGAAATAACGACAGGAGAC---ATATGggatgct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223650440 352 - 227556264 CTTAGAGGCATATGCATCGATATTGTGTGAAGTCTTTTTTGTTAGCTGT--TTTCTAATGATGCTTTC-GAGTT------TTGTTGTTGTTCTATTTTTGT------------------------------------------------------TCTCCCATGTATATCT-----------------TGGTTTGTGATCAGTGTGTAAAGGAGGAGGAATGGTTGTTTGGTTGAGACATTTGCAAATAGTAAGTAGTCACCTTACCTAACTTGGCTAATTTGCATTG--TTTCCATACAGAGAAAGTAGTT-TGACAGTCAAGGATGATAGAAAGTCAGAGGATGATAGAAAACAATCCTTTCTTCATACAGGATAATAAGAAGAAA----TGAATAATCTAAAGAAAGAAATAACGACAGGAGAC---ATATGggatgct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16701532 352 - 220367699 CTTAGAGGCATATGCATCGATATTGTGTGAAGTCttttttgttagctgt--tttctaatgatgctttc-gagtt------ttgttgttgttctatttttgt------------------------------------------------------tcTCCCATGTATACCT-----------------TGGTTTGTGATCAGTGTGTAAAGGAGGAGGAATGGTTGTTTGGTTGAGACATTTGCAAATAGTAAGTAGTCACCTTACCTAACTTGGCTAATTTGCATTG--TTTCCATACAGAGAAAGTAGTT-TGACAGTCAAGGATGATAGAAAGTCAGAGGATGATAGAAAACAATCCTTTCTTCATACAgaataataagaagaaa----tgaataatctaaagaaagaaataacgaCAAGAGAC---ATATGGGATGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82499675 356 + 85787240 CTTAGAGGCGTATGCATCGACGTTGTGTGAAGTCTTTTTTGTTAGCTGT--TTTCTGATGATGCTTTCAGAgtttt---gttgttgttgttatgtttttgt------------------------------------------------------tCTCCCATGTATACCT-----------------TGGTTTGTGATCAGTGTGTAGAGGAGAAGGAATGGTTGTTTGGTTGAGACATTTGCAAATAGTAAGTAGTCACCTTACCTAACTTGGCTAATTTGCATTG--TTTCCATACAGAGAAAGTAGTT-TGACAGTCAAGGATGACAGAAAGTCAGAGGATGATAGAAAACAATCCTTTCTTCATACAGAATAATAAGAAGAAA----TGAATAATCTAAAGAAAGAAATAACGACAAGAGAC---ATATGggatgct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14179269 309 - 49578535 CTTAGAGGCATATGCATCAGTGTTGAGTGAAGTC--TTGGGTTAGTGCC---------------TTTCAGAGTTTT---GTCGCTGTTGTTAGGTTTCTGC------------------------------------------------------TCTCCCATGTGTGCCT-----------------TGGTTTGTGGTCAGTGTGTAGAGGAGGAGGAGTGGTCGTTCGGCTGAG-CATTTGCAAATAGTAAGTAGTAACCTTACCTGACGTGGCTAATTTGCATAG--TTTCCATACAGAGAAAGTAGTT-TGACAGTCA----------------------------GAAACAATCCTTTCTTCATACAGAATAAGAAGAAGAAA----TGAATCATCTTAAGAAAGAAATAACaa---gagac---acttgggatgcg i calJac3.chr19 C 0 C 0 s mm10.chr1 178768591 408 + 195471971 ATTAGGGCC--ATGAATCAATATTGGATTCAGTATCTCATGGTATTTTC--TAACTGAT-----TTTGAGGGatat---atatatatatatatatatatatatatatatatatatatacacatacacacacacacacacacacacacacacacacacacacatatatatCTGTTGTCTGCTTCCACACCAGCTTGTGATCAGTATACAAAGGAGAGGGAATCA-CATTTGGTTTTGGTATTAATAAAAA--AAGCAGTGAACTCACATACCAT---TAGTAGACATGGGATTTCCTAATACCAGAAGTGGGG-TGGTATTTGAG-----------GCCAGAGATAAAAAGAAAAAGATCTGTTGTGTATAAGGA--AATAATAATAAAATCCTGAATGAGCTGAAGAA--AAATAACCATCAAAGACAAGAGAGGGCATGCT i mm10.chr1 C 0 I 1069 s canFam3.chr7 36336683 312 + 80974532 CTTAGGGGCACATGCATCAGTATTATGTGAAATCTCTT---------CT--ATTCTTATTATGCTCTT-TACTTTT----------TGGTTATTTTTCTGT------------------------------------------------------TCTCCTACATGCAGCT-----------------TAGCTTGTGGTAGGCATGTACTGGAGTGGGACCGGTTGTTTGATTGAAACATTTGCAAAAAATGGGTGGTAACCTTACCTAAC--GATGAATTTACACAC--TTCCCACATAGAGAAAGTGGTT-TGAAAAGAGAGGA-----------CAGAGGATGATCTAAAGCAACCCTT--------------GACATTGTggga----tcactgagcaaacattgaatccatccagaagacgc---aaatgggatgat i canFam3.chr7 C 0 C 0 a score=640749.000000 s hg38.chr1_KI270759v1_alt 174066 199 + 425601 gactggtccagaaacc--gtcaggtagcaacagttgcaaatctgagggagttcagcctggagaagaccaa--ggggaga--gagtagaaaggatactcaaatatttgaaaggacacaggcttcttttctgtt-------------------------------------------------------------------------gctctatatagaactaggattcgtggataaggattgcaaatagacaaatttccacttaaataagaaaaaactt s panTro4.chr1 224926444 199 + 228333871 gactggtccagaaacc--gtcaggtagcaacagttgcaaatctgagggagttcagcctggagaagaccaa--ggggaga--gagtagaaaggatactcaaatatttgaaaggacacaggcttcttttctgtt-------------------------------------------------------------------------gctctatatagaactcggattcgtggataaggattgcaaatagacaaatttccacttaaataagaaaaaactt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226285270 200 - 229942017 G-CTggtccagaaaccatgtcaggtagcaacagttgcaaatccaagggagttcagcctggagaagaccaa--ggggaga--gagtagaaaggatactcaaatatttgagaggacacaggcttcttttctgtt-------------------------------------------------------------------------gctctatatagaactaggattcgtggataaggattgcaaatagacaaatttccgcttaaataagaaaaaactt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140174261 201 - 143122389 gactggtccagaaaccatgtcaggtagcaacagttgcaaatctgagggagttcagcctggagaaaaccaa--ggggaga--gagtagaaaggatactcaaatagttgaaaggacacaggcttcttttctgtt-------------------------------------------------------------------------gctctatatagaactaggattcgtggataaggattgcaaatagacaaattttcacttaaataagaaaaaactt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16887990 201 - 229590362 gactggtccagaaaccatgtcaggtagcaacagtggcaaatctgagggagttcagcctgaggaagaccaa--ggggaga--gagtagaaaggatacgcaaatatttgaaaggacacagccttcttttctgtt-------------------------------------------------------------------------gctctgtatagaactaggattcgtggataaggactgcaaatagacaaatttctacttaaataagaaaaaactt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223650792 201 - 227556264 gactggcccagaaaccatgtcaggtagcaacagtggcaaatctgagggagttcagcctgaggaagaccaa--ggggaga--gagtagaaaggatacgcaaatatttgaaaggacacagccttcttttctgtt-------------------------------------------------------------------------gctctgtatagaactaggattcgtggataaggactgcaaatagacaaatttctacttaaataagaaaaaactt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16701884 201 - 220367699 GACTGGTCCAGAAACCATGTCAGGTAGCAACAGTGGCAAATCTGAGGCAGTTCAGCCTGAGGAAGACCAA--GGGGAGA--GAGTAGAAAGgatacacaaatatttgaaaGGACACAGCCTTCTTTTCTGTT-------------------------------------------------------------------------GCTCTGTATAGAACTAGGATTCGTGGATAAGGACTGCAAATAGACAAATTTCtacttaaataagaaaaaactt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82500031 201 + 85787240 gactggtccagaaaccatgtcaggtagcaacggtggcaaatctgagggagttcagcctgaggaagaccaa--ggggaga--gagtagaaaggatacgcaaatatttgaaaggacacaggcttcttttctgtt-------------------------------------------------------------------------gctctgtatagaactaggattcgtggataaggactgcaaatagacaaatttctacttaaataagaaaaaactt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14179578 197 - 49578535 gactggtctggaagctgtgtcccgtg-----agtcacaaacctgaaggagcttagcctggcgcagaccaagtggggaaa--gaggagaaagggtccccaagtatttcaaaggacacaggcttgttttctgtt--------------------------------------------------------------------------ctctgtgtagaaatgggatttgcagataaggattgcaaagagacaaatctccatttaaataagaaaaaattt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36336995 275 + 80974532 gactggtccggaagctgtgccagggagggataattgcagatcc-agagggttgagcctggagcagacaga--gaggaggatgagtcggaattatattcaaatatttgaaaggGCACAGATCTATTTTATGCTTTTTAATAGTTTTTGTTTTGTTAATTTTTTAATGTTTATGGTTTTTGTTTTTATGTTGTATTTTGACTTTTATGCTCTAGATAGGACTAGCATTTGTGGATGAGGATTGCAAATAGACAAATTTCCAATTTTTTAAAAAAGAtttt i canFam3.chr7 C 0 I 315 e mm10.chr1 178768999 1069 + 195471971 I a score=376440.000000 s hg38.chr1_KI270759v1_alt 174265 122 + 425601 tcaaataattaaagctgcccggccaggtgcagtggctcacacttataatcccaacactttgggaggctgaggcaggtggatcgcttgagcccaggagtttaggaccagcctgggcaacatgg s panTro4.chr1 224926643 122 + 228333871 tcaaataattaaagctgccTggccaggtgcagtggctcacacttgtaatcccaaccctttgggaggctgaggcaggtggatcgcttgagcccaggagtttaggaccagcctgggcaacatgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226285470 122 - 229942017 tcaaataattaaagctTCCCggccaagtgcagtggctcacacctgtaatcccaatactttgggagactgaggcaggtggatcacttgagcccaggagtttaggaccagcctgggcaacatgg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140174462 122 - 143122389 tcaaataattaaagctgcccggccaggtgcagtggctcacacctgtaatcccaacacttcggaaggctgaggcaggtggatcacttgagcccaggagtttaggaccagcctgggcaacatgg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16888191 122 - 229590362 tcaaataattaaagctgcccggccaggtgcagtggctcacacctgtaatcccaacactttgggaggctgaggcaggtggatcgcttgagcccaggagttcaggaccagcctgggcaacatgg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223650993 122 - 227556264 tcaaataattaaagctgcccggccaggtgcagtggctcacacctgtaatcccaacactttgggaggctgaggcaggtggatcgcttgagcccaggagttcaggaccagcctgggcaacatgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16702085 122 - 220367699 tcaaataattaaagctgcccgaccaggtgcagtggctcacacctgtaatcccaacactttgggaggctgaggcaggtggatcgcttgagcccaggagttcaggaccagcctgggcaacatgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82500232 122 + 85787240 tcaaataattaaagctgcccggccaggtgcagtggctcacacctgtaatcccaaccctttgggaggctgaggcaggtggatcgcttgagcccaggagttcaggaccagcctgggcaacatgg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14179775 110 - 49578535 tcaaatcattaaagctgccTggccaggtgcggtgtctcacacctgtaatctcaacactttgggaggctggggcaggtggatcgcatgag------------agcccagcctgggcaacatgg i calJac3.chr19 C 0 M 545 e mm10.chr1 178768999 1069 + 195471971 I e canFam3.chr7 36337270 315 + 80974532 I a score=297096.000000 s hg38.chr1_KI270759v1_alt 174387 145 + 425601 cgtgaccctgtctctcc---aaacaaacaaacaa----acaacaaacaaaaaactagcctagtgtggtagcatgcacctgtagtccgagctacttgggaggctgatgagggaggatcacttgagcctgggaagtcagggctgcagtgagcca s panTro4.chr1 224926765 145 + 228333871 cgtgaccctgtctctcc---aaacaaacaaacaa----acaacaaacaaaaaactagcctagtgtggtagcatgcacctgtagtcccagctacttgggaggccgatgagggaggatcacttgagcctgggaagtcagggctgcagtgagcca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226285592 138 - 229942017 cgtgaccctgtctctcc---aaacaaaca-----------aacaaacaaacacctagcctagtgtggtagcatgcacctgtagtcccagctacttgggaggccgatgagggaggatcacttgagcctgggaagtcaaggctgcattgagcca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140174584 142 - 143122389 tatgaccctgtctctcc---agacaaacaaaca-------aacaaacaaaaacctagcctagtgtggtagcatgcacctgtagtcccagctacttgggaggccaatgagggaggatcacttgagcctgggaagtcaaggctacagtgagcca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16888313 148 - 229590362 cgtgaccctgtctctcc---aaaaaaaaaaacaaaaccaaaaccaaaaacaaactagtctggtgtggta-cgtgcacctgtagtcccagctacttgagaggccgatgagggaggatcacttgagcctgggaagtcaatgcagcagtgagcca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223651115 148 - 227556264 cgtgaccctgtctctcc---aaaaaaaaaaaaaaaaccaaaaccaaaaacaaactagtctggtgtggta-cgtgcacctgtagtcccagctacttgagaggccgatgagggaggatcagttgagcctgggaagtcaatgctgcagtgagcca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16702207 151 - 220367699 cgtgaccctgtctctccaaaaaaaaaaaaaacaaaaccaaaaccaaaaacaaactaGTCTGGTGTGgta-catgcacctgtagtcccagctacttgagaggccgatgagggaggatcagttgagcctgggaagtcaatgctgcagtgagccg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82500354 144 + 85787240 cgtgaccctgtctctcc------aaaaaaaacaaaaccaaaaccaaaaacaaactagtctggtgtggta-catgcacctgtagtcccagctacttgagaggccgatgagggaggatcacttgagcct-ggaagtgaatgctgcagtgagccg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178768999 1069 + 195471971 I e canFam3.chr7 36337270 315 + 80974532 I e calJac3.chr19 14179885 545 - 49578535 M a score=486946.000000 s hg38.chr1_KI270759v1_alt 174532 210 + 425601 tgaccgtgccactgcactccagcctgagcaaca----aagaccctgtctcGGGGGGG-AGGAAAGAAAAAAAACTGCCGAACTACATGCAGGGTGGGATTGGGCATGGTACCTGGGCCAGCCTGTTGGCATAACATGTGGAAGC-GGGTGACCCACAGTCAGGGGTCAGTCTGAGGGACTGCCATACTGGGCTAGGGCCTCTGAGTGCTCTGCCAG s panTro4.chr1 224926910 213 + 228333871 tgaccgtgccactgcactccagcctgggcaacagagcaagaccctgtctcagcgggg-gaaaaagaaaaaaa-CTGCCAAACTACATGCAGGGAGGGATTGGGCATAGTACCTGGGCCAGCCTGTTGGCATAACATGTGGAAGC-GGGTGACCCGCAGTCAGGGGTCAGTCAGAGGGACTGCCATACTGGGCTAGGGCCTCTGAGTGCTCTGCCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226285730 215 - 229942017 tgaccgtgccactgcactccagcctgggcaacagagcaagaccctgtctcaggggggaaaaaaagaaaaaaaaCTGTCAAACTACGTGCAGGGTGAGATTGGGTATAGTACCTGGGCCAGCCTGTTGGCATAACATGTGGAAGC-GGGTGACCCGCAGTCAGGGGTCAATCAGAGGTACTGCCATACTGGGCTAGGGCCTCTGAGTGCTCTGCCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140174726 206 - 143122389 tgaccgtgccactgcactccagcctgggcaacagagcaagaccctgtctcgggggaa-aaaaaaG--------CTGCCAAACTACGTGCAAGGTGGGATTGGGCATAGTACATGGGCCAGCCTGTTGGCATAGCATGTGGAAGT-GGGTGACCCGCAGTCAGGGGTCAATCAGAGGGACTGCCATACTGGGCTAGGGCCTCTGAGTGCTCTGCCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16888461 207 - 229590362 tgactgtgccactgcactccagcctgggcaacagagcaagaccctgtctcaggggga-----aaaaaaaaaaaCTGCCAAACTACGTGCAAGGTGGGTCTGGGCATAGTGCATGGGCCAGCCTGTTGGCATAAC--GTGGAAGC-GGGTGACCCGCAGTCAGGGGTCAA-CAGGGGGACTGCCGTACTGGGCTAGGGCCTCTGAGTGCTCTGCCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223651263 204 - 227556264 tgactgtgccactgcactccagcctgggcaacagagcaagaccctgtctcaggggg--------ggaaaaaagctgccAAACTACGTGCAAGGTGGGTCTGGGCATAGTGCATGGGCCAGCCTGTTGGCATAAC--GTGGAAGC-GGGTGACCCGCAGTCAGGGGTCAA-CAGGGGGACTGCCGTACTGGGCTAGGGCCTCTGAGTGCTCTGCCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16702358 207 - 220367699 tgactgtgccactgcactccagcctgggcaacagagcaagaccctgtcttgggggg-------aaaaaaaaaactgccaaactatgTGCAAGATGGGTTTGGGCATAGTGCATGGGCCAGCCTGTTGGCATAACATGTGGAAGC-GGGTGACCCGCAGTCAGGGGTCAA-CAGGGGGACTGCCATACTGGGCTAGGGCCTCTGAGTGCTCTGCCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82500498 209 + 85787240 tgactgtgccactgcactccagccggggcaacagagcaagaccctgtctTGGGGGGT-----GGGGGGAAACCCTGTCAAACTATGTGCAAGGTGGGTTTGGGCATAGTGCATGGGCCAGCCTGTTGGCATAACATGTGGAAGC-GGGTGACCCGCAGTCAGGGGTCAA-CAGGGGGACTGCCATACTGGGCTAGGGCCTCTGAGTGCTCTGCCAG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36337585 187 + 80974532 tgactgagccact---------caggtgccccAGACCAAT-TCCTGT-TTAGAGAAA-CACTTTCAAATAAAGTCACAAAACTATGTGC---------------ACAATGCACCCACCATCCTCTTGGTGTGACATGTGGAAGCTGAGTGACCAGTAGG-AGGTGCAAA-CAGATGGACTCTCACACTAGACCGGGACCTCTGAGTGCTCTGCCAA i canFam3.chr7 I 315 C 0 e mm10.chr1 178768999 1069 + 195471971 I e calJac3.chr19 14179885 545 - 49578535 M a score=749164.000000 s hg38.chr1_KI270759v1_alt 174742 264 + 425601 CTTAGGGGTTCCATGATTCTC----AGCAGAT-----------TTCCAG--CAGGTGTTTGAGGGTTTCTGCA-TTCAGTG--ACATAAA-CAGGCCCTC-GTGCTT-------------CTGTGGGTTAT-AGGCCAGCTTGGTACCGTATAACCAGTACA-TCAAGAGTTGAAGT----------GTTGCACTAAT-GCTTTCCAAGAG-TCAGAGCTGGCAGAGTGACCGGGTATACAGGCAGAGTTTGTACTCTTTCCTTTTAGAAACACACTCTGC-TGTCTGTACCTGAATTGTT-CT-CACTCTGTGGA s panTro4.chr1 224927123 264 + 228333871 CCTAGGGGTTCCATGATTCTC----AGCAGAT-----------TTCCAG--CAGGCGTTTGAGGGTTTCTGCA-TTCAGTG--ACATAAA-CAGGCCCTT-GTGCTT-------------CTGTGGGTTAT-AGGCCAGCTTGGTACCATGTAACCAGTACA-TCAAGAGTTGAAGT----------GTTGCACTAAT-GCTTTCCAAGAG-TCAGAGCTGGCAGAGTGACCGGGTATACAGGCAGAGTTTGTACTCTTTCCTTTTAGAAACACACTCTGC-TGTCTGTACCTGAATTGTT-CT-CACTCTGTAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226285945 264 - 229942017 CCTAGGGGTTCCATGATTCTC----AGCAGAT-----------TTCCAG--CAGGCGTTTGAGGGTTTCTGCA-TTCAGTG--ACATAAA-CAGGCCCTC-ATGCTT-------------CTGTGGGTTAT-AGGCCAGCTGGGTACCATGTAACCAGTACA-TCAAGAGTTGAAGT----------GTTGCACTAAT-GCTTTCCAAGAG-TCAGAGCTGGCAGAGTGACCAGGTATACAGACAGAGTTTGTAGTCTTTCCTTTTAGAAACACACTCTTC-TGTCTGTACCTGAATTGTT-CT-CACTCTGTAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140174932 264 - 143122389 CCTAGGGGTTCCATGATTCTC----AGCAGAC-----------TTCCAG--CAGACGTTTGAGGGTTTCTGCA-TTCAGTG--ACATAAA-CAGACCCTC-GTGCTT-------------CTGTGGGTTAT-AGGCCAGCTTGGTACCATGTAACCAGTACA-TCTAGAGTTGACGT----------GTTGCACTAAT-GCTTTCCAAGAG-TCAGATTTGGCAGAGTGACTGCGTATACAGACAGAGTTTGTACTCTTTCCTTTTAGAAATACACTCTGC-TGTCTGTACCTGAATTGTT-CT-CACTCTGTAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16888668 264 - 229590362 CCTAGCGGTTGCATGATGCTC----AGCAGAT-----------TTCCAG--CAGGCGCCTGAGGGTTTCCGCA-TTCAGTG--ACATAAA-CAGGCCCTC-GTTCTT-------------CGGCGGGTTAC-AGGCCAGCTTGGTACCATGTAACCAGTACA-TCTAGAGTTGAAGT----------GTTACGCTGAT-GCTTTCCAAGAG-TCAGAGCTGGCAGAGTGGCCGGGTGCACAGACGGAGTTTGTGCTCTTTCCTTTTAGAAATACTCTCTGC-TCTCTGTACCTGAATCGTT-CT-CACTCTGTGGA i rheMac3.chr1 C 0 I 318 s macFas5.chr1 223651467 264 - 227556264 CCTAGCGGTTCCATGATGCTC----AGCAGAT-----------TTCCAG--CAGGCGCCTGAGGGTTTCTGCA-TTCAGTG--ACATAAA-CAGGCCCTC-GTTCTT-------------CGGCGGGTTAC-AGGCCAGCTTGGTACCATGTAACCAGTACA-TCTAGAGTTGAAGT----------GTTACGCTGAT-GCTTTCCAAGAG-TCAGAGCTGGCAGAGTGGCCGGGTGCACAGACGGAGTTTGTGCTCTTTCCTTTTAGAAATACTCTCTGC-TCTCTGTACCTGAATCGTT-CT-CACTCTGTGGA i macFas5.chr1 C 0 I 311 s papAnu2.chr1 16702565 264 - 220367699 CCTAGCGGTTCCATGATGCTC----AGCAGAT-----------TTCCAG--CAGGCGTTTGAGGGTTTCTGCC-TTCAGTG--ACATAAA-CAGGCCCTC-GTTCTT-------------CGGCGGGTTAT-AGGCCAGCTTGGTACCATGTAACCAGTACA-TCTAGAGTTGAAGT----------GTTACGCTAAT-GCTTTCCAAGAG-TCAGAGCTGACAGAGTGGCCGGGTGCACAGACGGAGTTTGTGCTCTTTCCTTTTAGAAATACTTTCTGC-TCTCTGTACCTGAATCGTT-CT-CACTCTGTGGA i papAnu2.chr1 C 0 I 315 s chlSab2.chr25 82500707 262 + 85787240 CCTAGCGGTTCCATGATGCTC----AGCAGAT-----------TTCCAG--CAGGCGTTTGAGGGTTTCTGCA-TTCAGTG--ACATAAA-CAGGCCCTC-GTTCTT-------------CGGCGGGTTGT-AGGCCAGCTTGGTACCGTGTAACCAGTACA-TCTAGAGTTGAAGT----------GTTACACTAAT-GCTTTCCAAGAG-TCAGAGCTGGCAGAGTGGCCAGGTGCACAGACGGAGTTTGTGCTCTTTCCTTTTAGAAATACTCTCTGC-TCTCTGCACCTGAATCGTT-CT---CTCTGTGGA i chlSab2.chr25 C 0 I 1155 s calJac3.chr19 14180437 267 - 49578535 CCCAAGGGTTTCGTGATTTTT----CGGAATT-----------CCCCAAGCAAGGGGTTCGAGGATTTCTGCACTTCAGTGGAATATAAACCAGGCCCTCGGTTCTT-------------CTACGGGTTATAAGGCCAGCT--------TTTAGCCAGTACCTTTTAGGGTTGAAGT-----------TTGCCCGGATGGCATTCCAAGAGTTCAGAGCTGGCAGAGGTACTGAACGTACAGATGGAGTTTGTACTCTTGCTTTTTAGAAATACACTGTGC-TCTTTGCACATGAATTGTTCCT-TGCTCTGTAGA i calJac3.chr19 M 545 C 0 s canFam3.chr7 36337772 291 + 80974532 CATATACATTCCAGGATTCTCAAGGAGCAGGTCTTTAAAAAGATTTCAG--AAGGTA-TTGAGAGTGTCTACATTTCTATG--ATACAAA-TAGGCCCTC-GTTCTTCAAAGCGTTTGTACAGCAACTTAT-AATCCAGTTTGG-----TTTAATTGGCAAA-TCTCAGGTTGAATTGAATCTTTGGGTTGTAACAAT-GCATTCCAAGAG-TTAGAGCTGGT-GCATGATCAGGTCT--GGACTGAGTTAGGAGT-----GTTCTAGAAATACACTCTGTACTTCTGTGCCTGAATTGTC-CTCCATTCTGTAAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178768999 1069 + 195471971 I a score=294527.000000 s hg38.chr1_KI270759v1_alt 175006 84 + 425601 GGACTTGGGATTCTTGATGTTATTTATCTTATGTGTTCCAAGTGCT-AAGTAGTTTAATCCTAATACTTTTAAAATGTTAAAAAA s panTro4.chr1 224927387 84 + 228333871 GGACTTGGGATTCTTGATGTTATTTATCTTATGTGTTCCAAGTGCT-AAGTAGTTTAATCCTAATACttttaaaatgttaaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226286209 85 - 229942017 GGACTTGGGATTCTTTATGTTATTTATCTTATGTGTTCCAAGTGCTAAAGTAGTTTAATCCTAACACTTTTAAAATGTTaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140175196 85 - 143122389 GGACTTGGGATTCTTGATGTTATTTATCTTATGTGTTCCAAGTGCTAAAGTAGTTTAATCCTAACACTTTTAAAATGTTAAAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16889250 85 - 229590362 GGACTTGGGATTCTTGATGTTATTTATCTTATGTGTTCCAAGTGCTAAAGTAGTTTAACCCTAACACttttaaaatgttaaaaaa i rheMac3.chr1 I 318 C 0 s macFas5.chr1 223652042 85 - 227556264 GGACTTGGGATTCTTGATGTTATTTATCTTATGTGTTCCAAGTGCTAAAGTAGTTTAACCCTAACACTTTTAAAATGTTAAAAAA i macFas5.chr1 I 311 C 0 s papAnu2.chr1 16703144 85 - 220367699 ggacTTGGGATTCTTGATGTTATTTATCTTATGTGTTCCAAGTGCTAAAGTAGTTTAACCctaacacttttaaaatgttaaaaaa i papAnu2.chr1 I 315 C 0 s chlSab2.chr25 82502124 85 + 85787240 GGACTTGGGATTCTTGATGTTATTTATCTTATGTGTTCCAAGTGCTAAAGTAGTTTAATCCTAACACTTTTAAAATGTTaacaaa i chlSab2.chr25 I 1155 C 0 s calJac3.chr19 14180704 83 - 49578535 GGACTTGGGA-TCTTTACGTCATTTATCTTATGTGTTCCAAGTGCTAAAGTAGTTTGATCCCAACACTTTTAAAG-GTTAGAAAA i calJac3.chr19 C 0 I 286 s canFam3.chr7 36338063 85 + 80974532 GATCTCAGGATTCTTTATTTTCCTTATCTTCTGCGTTCCAAGTGCTCATGTGATTTAATCCTAACATTTTCAAAGAATTGAATAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178768999 1069 + 195471971 I a score=1022913.000000 s hg38.chr1_KI270759v1_alt 175090 315 + 425601 AAAAAAAAAA----------GAGAGAGAGAAATGTTTAAAGTTTGGATAGAAACCCTtagaatcattaaatattctcagtgaaagggaccacagaggtcatctgggcccatttcctcattttatagaaaaggagtctgcaagatccagacagCAGTTCA-CCCAGATTAGTTGGTTGATTCAAACTTTCCCTTCCTATTTCTCTCTACAGTGTTTTATCTACAATTAT-ATT-----------------AT--ATTTAAGATTTGGCAACAATGACCATATGAGAagtccttgtaatatgccaggcactgtgctggccgtgcgttgtgcgtgcattttcctattta s panTro4.chr1 224927471 317 + 228333871 aaaaaaaaaaa--------aGAGAGAGAGAAATGTTTAAAGTTTGGATACAAACCTTtaaaatcattaaatattctcagtgaaagggaccacagaggtcatctgggcccatttcctcattttatagaaaaggagtttgcaagatccagacagCAGTTCA-CCCAGATTAGTTGGTTGATTCAAACTTTCCCTTCCTATTTCTCTCTACAGTGTTTTATCTACAATTAT-ATT-----------------AT--ATTTAAGATTTGGCAACAATGACCATATGAGAagtccttgtaatatgccaggcactgtgctggccgtgcgttgtgcgtgcattttcctattta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226286294 320 - 229942017 aaaaaaaaaaaaag-----agagagagagaaaTGTTTAAAGTTTGGATGCAAACCCTtagaatcattaaatattctcagtgaaagggaccacagaggtcatctgggccgatttcctcattttatagaaaaggagtctgcaagatccagacagCAGTTCA-CCCAGATTAGTTGGTTGATTCAAACCTTCCCTTCCTATTTCTTTCTACAGTGCTTTATCTACAATTAT-ATT-----------------AT--ATTTAAGATTTGGCAACGATGACCATATGAGAagtccttgtaatatgccaggcactgtgctggccatgcgttgtgtgtgcattttcctattta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140175281 317 - 143122389 AAAAAagagag--------agagagagagaAATGTTTAAAGTTTGGATACAAACCCTtagaatcattaaatattctcagtgaaagggaccacagaggtcatctgggccgatttcctcattttatagaaaaggagtctgcaagatccagacagCAGTTCA-CCCAGATTAGTTGGTTGATTCAAACCTTCCCTTCCTATTTCTCTCTATGGTGTTTTATCTACAGTTAT-ATT-----------------AT--ATTTAAGATTTGGCAACAATGACCATATGAGAAGTCCTTGTAATATGCCAGGCACTGTGCTGGCCGTGCATTGTGTGTGCATTTTCCTATTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16889335 317 - 229590362 aaaaaaaaaa---------aGAGAGAGAGAAATGTTTGAAGTTTGGATACAAACCCTtaaaatcattaaatattctcagggaaagggaccacagaggtcatctgggccgatttcctcattttatagaaaaggagtctgcaagatccagatagCAGTTCACCCCAGATGAGTTGGTTGATTCAAACCTTCCCTTCCTATTTCTCCCTGCAGTGTTTTATCTACAATTAT-ATT-----------------AT--ATTTAAGATTTGGCAACAATGaccatatgagaagtccttataatatgccaggcactgtgctggccgtgtattgtgtgtgcattttcctattta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223652127 326 - 227556264 AAAAAAAAAagagagagagagagagagagaAATGTTTGAAGTTTGGATACAAACCCTtaaaatcattaaatattctcagggaaagggaccacagaggtcatctgggccgatttcctcattttatagaaaaggagtctgcaagatccagatagCAGTTCACCCCAGATGAGTTGGTTGATTCAAACCTTCCCTTCCTATTTCTCCCTGCAGTGTTTTATCTACAATTAT-ATT-----------------AT--ATTTAAGATTTGGCAACAATGaccatatgagaagtccttataatatgccaggcactgtgctggccgtgtattgtgtgtgcattttcctattta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16703229 312 - 220367699 aaaaa--------------agagagagagaaatgtttaAAGTTTGGATACAAACccttaaaatgattaaatattctCAGGGAAAGGGACCACAGAAGTCATCTGGGCCgatttcctcattttatagaaaaggagtCTGCAAGATCCAGATAGCAGTTCACCCCAGATGAGTTGGTTGATTCAAACCTTCCCTTCCTATTTCTCCCTGCAGTGTTTTATCtacaattat-att-----------------at--atttaagatTTGACAACAATGACCATATGAGAAGTCCTTataatatgccaggcactgtgctagccGTGTATTGTGTGtgcattttcctattta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82502209 344 + 85787240 aaaaaaaaaaaagaaagagagagagggagaaaTGTTTAAAGTTTGGATACAAACCCTtaaaatcattaaatattctcagggaaagtgaccacagaggtcatctgggccgatttcctcattttatagaaaaggagtctgcaagatccagatagCAGTTCACCCCAAATGAGTTGGTTGATTCAAACCTTCCCTTCCTATTTCTCCCTGCAGTGTTTTATCTATAATTAT-ATTCATCTCTTACAATAATAATCAATTTAAGA-TTAGCAACAATGACCATATGAGAagtccttataatatgccaggcactgtgctggccgtgtgttgtgcgtgcattttcctattta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14181073 309 - 49578535 aaaaaaaaaaG---------------GAGAAGTGTTGGAGGTTCAGATACAAATCCTtagaatcattcaatattctcagtgaaagagaccacggaggtcatctgggtcgatttccttattctatagaaaa-gaatctgcaaaatccagacagCAGTTCC-CGCAGATCAGGTGGCTGAGTCAAACCTTCCCTTCTTAGTCCTCTCTTCAGTGTTTTACCTACAGTTAT-AAT-----------------AT--GTTTAAGATTTGACAACACTtgccatgtgaggagtccttgtaagatgccaggcattgtgctggccatgcattgtgtgtgcattctcctattta i calJac3.chr19 I 286 C 0 s canFam3.chr7 36338148 281 + 80974532 ---------------------------AGAAATGTTTGAAGTTTGGATACAAACCCTTGCaatcattaaatattctcaatggaagggaccacagagctcatctggtctaacctcttcattttatagaaaaggagaaggcacaATCCAGACAGTGGTTTATGCAAGA-------------GCAAATCTCCTCTTCCT----CCCCACAAAGTGCTTTATCCATGATCTTAACT-----------------GT--ATTTAAGATTTGGCAACAATTACTATATGGGAAGTATTTGTAGCCTGCCAGGCATTGTGCTGGCCACCTATTGCATATACATTGGCTTATG-- i canFam3.chr7 C 0 C 0 e mm10.chr1 178768999 1069 + 195471971 I a score=3416912.000000 s hg38.chr1_KI270759v1_alt 175405 894 + 425601 aAATGCCACCTATAAGT-GCCATCTTTGGAATATTTGTCCTTTAGAAAGAAGCATCTGCTTCAAACCAATGGCAGAGACAAAATGGCTTT-TCTCTTATCTTTACTACTGTGTGGATTTCTCCATAAACAAGAACTGGCAAAGGGCCTCATAACAGCTCTGTGGCCC----TCTCTGGGCTCAGAGAATGCCCGTAGCCACCAGCCCAGCTGGCA-ACAAATGGTTGCAGGTTCTGTTTCCATGTTTCAGTCAATCTGTCTAGAGAACAATGGAACTCCTGAACCATTCCCGTG--CTCAAATGTAACGTAAAAAGGACAATATAAAATATCAGGCTTCTGTGTTTGAACTGCTCCCCTGGGGAAAGGAGCAT--------------GGTGGTTGGGAACTCAGCATTAAACAAGGAAACTCGAT-GTGT-----ATCCAGC---ATCACT-GAGTGCTCAGGTCTGCAGACTGCAGAGA--GATGTAATGCTTA----TTCCTGTTCCCACATCTTTGATCTTTTTGCGTGAAGCTAATATTTGAGAATTCTTTATTTCCCTGGAGTGTCAAACCTCCTGTCAACTCGCCATAAAGACAAGGAAGAGATTTCCTTTTTCAACAAGTGAG----GACAGATGTGGCCAAGCGTTGATTATTATTGTAAGAGATGAATACAAATGTTATCATTACTGAGTGCTAAGCTTTGTTTATTTCTTCAGAATTCCCCTAGTGCCTCTGGGCTGGGAATCTCACCCACAGACCTTGATCAATGTCCCCTGGCACTTTGAACAGTCCTTGGTTGGACCTGACAGCACGCTCCAGTCTTACCTTTCACT----------------GGTAGCACAGCAGCGTCTAACCGATAGGGACTCTTCTTGGCTCTGTGTGTA-CTTTTACCATCCTAGATAATGAAGACCAGAGCCAAGGAAGAGAAAG s panTro4.chr1 224927788 893 + 228333871 aAATGCCACCTATAAGT-GCCATCTTTGGAATATTTGTCCTTTAGAAAGAAGCATCTGCTTCAAACCAATGGCAGAGACCAAATGGCTTT-TCTCTTATCTTTACTACTGTGTGGATTTCTCCATAAACAAGAACTGGCAAAGGGCCTCATAACAGCTCTGTGGCCC----TCTCTGGGCTCAGAGAATGCCCGTAGCCACCAGCCCAGCTGGCA-ACAAATGGTTGCAGGTTCTGTTCCCATGTTTCAGTCAATCTGTCTAGAGAACAATGGAACTCCTGAACCATTCCCGTG--CTCAAATGTAACGTAAAAAGGACAATATAAAATTTCAGGCTTCTGTGTTTGAACTGCTCCCCTGGGGAAAGGAGCAT--------------GGTGGTTGGGAACTCAGCATTAAACAAGGAAACTCGAT-GTGT-----ATCCAGC---ATCACT-GAGTGCTCAGGTCTGCAGACTGCAGAGA--GATGTAATGCTTA----TTCCTGTTCCCACATCTTTGATCTTTTTGCGTGAAGCTAATATTTGAGAATTCTTTATTTCCCTGGAGTGTCAAACCTCCTGTCAACTCGCCATAAAGACAAGGAAGAGATTTCCTTTTTCAACAAGTGAG----GACAGATGTGGCCAAGCGTTGATTATTATTGTAAGAGATGAATACAAATGTTATCATTACTGAGTGC-AAACTTTGTTTATTTCTTCAGAATTCCCCTAGTGCCTCTGGGCTGGGAATCTCACCCACAGACCTTGATCAATGTCCCCTGGCACTTTGAACAGTCCTTGGTTGTACCTGACAGCACGCTTCAGTCTTACCTTTCACT----------------GGTAGCACAGCAGCGTCTAACCGATAGGCGCTCTTCTTGGCGCTGTGTGTA-TTTTTACCATCCTAGATAATGAAGACCAGAGCCAAGGAAGAGAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226286614 894 - 229942017 aAATGCCACCTATAAGT-GCCATCTTTGGAATATTTGTCCTTTAGAAAGAAGCATCTGCTTTGAACCAATGGCAAAGACCAAATGGCTTT-TCTCTTATCTTTACTACTGTGTGGATTTCTCCATAAACAAGAACTGGCAAAGGGCCTCATAACAGCTCTGTGGCCC----TCTCTGGGCTCAGAGAATGCCCGCAGCCACCAGCCCAGCTGGCA-ACAAATGGTTGCAGGTTCCGTTCCCATGTTTCAGTCAATCTGTCTAGAGAACAATGGAACTCCTGAACCATTCCCGTG--CTCAAATGTAACGTAAAAAGGACAATATAAAATTTCAAGCTTCTGTGTTTGAACTGCTCCCCTGGGGAAAGGAGCAT--------------GGTGGTTGGGAACTCAGCATTAAACAAGGAAACTCGAT-GTGT-----ATCCAGC---ATCACT-GAGTGCTCAGGTCTGCAGACTGCAGAGA--GATGTAATGCTTA----TTCCTGTTCCCACATCTTTGATCTTTTTGCGGGAAGCTAATATTTGAGAATTCTTTATTTCCCTGGAGTGTCAAACCTCCTGTCAACTCGCCATAAAGACAAGGAAGAGATTTCCTTTTTCAACAAGTGAG----GACAGATGTGGCCAAGCGTTGATTATTATTGTAAGAGATGAATACAAATGTTATCATTACTGAGTGCTAAGCTTTGTTTATTTCTTCAGAATTCCCCTAGTGCCTCTGGGCTGCGAATGTCACCCACAGACCTTGATCAATGTCCCCCGGCACTTTGAACAGTCCTTAGTTTGACCTGACAGCACGCTCCAGTCTTCCCTTTCACT----------------GGTAGCACAGCAGTGTCTAACCAATGGGCACTCTTCTTGGCGCTGTGTGTA-TTTTTACCCTCCTAGATAACGAAGCCCAGAGCCGAGGAAGAGAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140175598 890 - 143122389 AAATGCCACCTATAAGT-GCCATCTTTGGAATATTTGTCTTTCAGAAAGAAGCGTCTGCTTCGAGCCAATGGCAGAGACCAAATGGCTTT-TCTCTTATCTTTACTACTGTGTGGATTTCTCCACAAACAAGAACTGGCAAAGGGCCTCATAACAGCTCTGTGGCCC----TCTCTGGGCTCAGACAATGCCCATAGCCACCAGCCCAGCTGGCA-ACGAATGGTTGCAGGTTCTGTTCCCATGTTTCAGTCAATCTGTCTAGAGAACAATGGAACTCCTGAACTATTCCCGTG--CTCAAATGTAACGTAAAAGGGACAATATAAAATTTCAGGCTTCTGTGTTTGAACTGCTCCCCTGGGGAAAGGAGCAT--------------GGTGGTTGGGAACTCAGCATTAAACAAGGAAACTCGAT-GTGT-----ATCCAGC---ATCACT-GAGCGCTCAGGTCTGCAGACTGCAGAGA--GATGTAATGCTTA----TTCCTGTTCCCACATCTTTGATCTTTTTGCGTGAAGCTAATATTTGAGAATTCTTTATTTCCCTGGAGTGTCAAACCTCCTGTCAACTCACCATAAAGACAAGGAAGAGATTTCCTTTTTCAACAAGTGAG----GACAGATGTGGCCAAGCGTTGATTATTATTGTAAGAGATGAATACAAATGTTATCATTACTGAGTGCTAAGCTTTGTTTATTTCTTCAGAATTCCCCTAGTGCCTCTGGGCTGGGAATCTCACCCACAGACCTTGATCAATGTCCCCTGGCACTTTGAACAATCCTTAGTTTGACCTGACAGCCCGCTCCAGTCTTCCCTTCCACT----------------GGTAGCATAGCAGCATCTAACCGATGGGCACTCTTCTTGGCAC----TGTA-TTTTTACCATCCTAGATAATGAAGCCCAGAGTCAAGGAAGAGAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16889652 898 - 229590362 aAATGCCACCTGTAAGT-GCCATCTCTGGAATATTTGTCGTTTAGAAAGAAGCATCTGCTTCGAACCAATGGCAGAGACCAAATGGCTTT-TCTCTTATCTTGACTACTGTGTGGATTTCTCCATAAACAAGAACTGGCACAGGGCCTCCTAACAGCTCTGTGGCCC----TCTCTGGGCTCGGAGAATGCTCGCGGCCACCAGCCCAGCTGGCA-ACAAATGGTTGCAGGTTCTGTTCCCATGTTTCGGTCAATCTGTCTAGAGAACAATGGAACTCCTGAACCATTCCCGTG--CTCAAATGTAACGTAAAAAGGACAATATAAAATTTCAGGCTTCTGTGTTTGAACTCCTCCCCTGGGGAAAGGAGCAT--------------GGTGGCTGGGAATGCAGCATTAAACAAGGAAACTCCAT-GTGT-----ATCCAGC---ATCACT-GAGCGCTCAGGTCTGCAGACTGCAGAGA--TCTGTAATGCTTA----TTCCTGTTCCCACATCTTTGATCTTTTTGCATGAAGCTAATATTTGAGAATTCTTTCTTTCCCTGGAGTGTCAAACCTCCTGTCAACTCACCATAAAGACAAGGAAGAGATTTCCTTTTTCAACAAGTGAGGACAGACAGATGTGGCCAAGCGTTGATTATTATTGTAAGAGATGAATACACATGTTATCATTACCGAGTGCTAAGCTTTGTTTATTTCTTCAGAATTCCCCTAGCGCCTCTGGGCTGGGAATCTCCCCCACAGACCTTGATCAACGTCCCCTGGCACTTTGAACAGTCCTTAGTTTGACCTGACAGCACGCTCCGGTCCTCGCCTTCTCC----------------AGTAGCACAGCAGCATCTAACCAATGAGCAGTCTTCTTGGCACTGTATGTA-TTTTTACCATCCTAGATAGTGAAGCCCAGAGCCAAGGAAGATAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223652453 898 - 227556264 aAATGCCACCTGTAAGT-GCCATCTCTGGAATATTTGTCGTTTAGAAAGAAGCATCTGCTTCGAACCAATGGCAGAGACCAAATGGCTTT-TCTCTTATCTTGACTACTGTGTGGATTTCTCCATAAACAAGAACTGGCACAGGGCCTCCTAACAGCTCTGTGGCCC----TCTCTGGGCTCGGAGAATGCTCGCGGCCACCAGCCCAGCTGGCA-ACAAATGGTTGCAGGTTCTGTTCCCATGTTTCGGTCAATCTGTCTAGAGAACAATGGAACTCCTGAACCATTCCCGTG--CTCAAATGTAACGTAAAAAGGACAATATAAAATTTCAGGCTTCTGTGTTTGAACTCCTCCCCTGGGGAAAGGAGCAT--------------GGTGGCTGGGAATGCAGCATTAAACAAGGAAACTCCAT-GTGT-----ATCCAGC---ATCACT-GAGCGCTCAGGTCTGCAGACTGCAGAGA--TCTGTAATGCTTA----TTCCTGTTCCCACATCTTTGATCTTTTTGCATGAAGCTAATATTTGAGAATTCTTTCTTTCCCTGGAGTGTCAAACCTCCTGTCAACTCACCATAAAGACAAGGAAGAGATTTCCTTTTTCAACAAGTGAGGACGGACAGATGTGGCCAAGCGTTGATTATTATTGTAAGAGATGAATACACATGTTATCATTACCGAGTGCTAAGCTTTGTTTATTTCTTCAGAATTCCCCTAGCGCCTCTGGGCTGGGAATCTCCCCCACAGACCTTGATCAACGTCCCCTGGCACTTTGAACAGTCCTTAGTTTGACCTGGCAGCACGCTCCGGTCCTCGCCTTCTCC----------------AGTAGCACAGCAGCATCTAACCAATGAGCAGTCTTCTTGGCACTGTATGTA-TTTTTACCATCCTAGATAGTGAAGCCCAGAGCCAAGGAAGATAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16703541 898 - 220367699 aaatgcCACCTGTAAGT-GCCATCTTTGGAATATTTGTCGTTTAGAAAGAAGCATCTGCTTCGAACCAATGGCAGAGACCAAATGGCTTT-TCTCTTATCTTGACTACTGTGTGGATTTCTCCATAAACAAGAACTGGCACAGAGCCTCCTAACAGCTCTGTGGCCC----TCTCTGGGCTCAGAGAATGCTCGCGGCCACCAGCCCAGCTGGCA-ACAAATGGTTGCAGGTTCTGTTCCCATGTTTCGGTCAATCTGTCTAGAGAACAATGGAACTCCTGAACCATTCCCGTG--CTCAAATGTAACGTAAAAAGGACAATATAAAATTTCAGGCTTCTGTGTTTGAACTCCTCCCCTGGGGAAAGGAGCAT--------------GGTGGCTGGGAATGCAGCATTAAACAAGGAAACTCCAT-GTGT-----ATCCAGC---ATCACT-GAGCGCTCAGGTCTGCAGACTGCAGAGA--GATATAATGCTTA----TTCCTGTTCCCACATCTTTGATCTTTTTGCATGAAGCTAGTATTTGagaattctttctttccctggaGTGTCAAACCTCCTGTTAACTCACCATAAAGACaaggaagagatttcctttttcaacaagtGAGGACGGACAGATGTGGCCAAGCGTTGATTAGTATTGtaagagatgaatacacatgttATCATTACCGAGTGCTaagctttgtttatttcttcagaaTTCCCCTAGCACCTCTGGGCTGGGAATCTCCCCCACAGACCTTGATCAACGTCCCCTGGCACTTTGAACAGTCCTTAGTTTGACCTGACAGCATGCTCCGGTCCTCGCCTTCTCC----------------AGTAGCACAGCAGCATCTAACCAATGAGCAGTCTTCTTGGCACTGTATGTA-TTTTTACCATCCTAGATAGGGAACCCCAGAGCCAAGGAAGATAAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82502553 898 + 85787240 aAATGCCACCTGTAAGT-GCCATCTTTGGAATATTTGTCCTTTAGAAAGAAGCATCTGCTTCGAACCAACGGCAGAGACCAAATGGCTTT-TCTCTTATCTTGAATACTGTGTGGATTTCTCCATAAACAAGAACTGGCACAGGGCCTCCTAACAGCTCCGTGGCCG----TCTCTGGGCTCGGAGAATGCCCACAGCCACCAGCCCAGCTGGCA-ACAAATGGTTGCAGGTTCTGTTCCCATGTTTCAGTCAATCTGTCTAGAGAACAATGGAACTCCTGAACCATTCCCGTG--CTCAAATGTAATGTAAAAAGGACAATATAAAATTTCAGGCTTCTGTGTTTGAACTCCTCCCCTGGGAAAAGGAGCAT--------------GGTGGCTGGGAATGCAGCATTAAACAAGGAAACTCCAT-GTGT-----ATCCAGC---ATCACT-GAGCGCTCAGGTCTGCAGACTGCAGAGA--TCTGTAATGCTTA----TTCCTGTTCCCACATCTTTGATCTTTTTGCATGAAGCTAATATTTGAGAATTCTTTCTTTCCCTGGAGTGTCAAACCTCCTGTCAACTCACCATAAAGACAAGGAAGATATTTCCTTTTTCAACAAGTGAGGACAGACAGATGTGGCCAAGCGTTGATTATTATTGTAAGAGATGAATACACATGTTATCATTACTGAGTGCTAAGCTTTGTTTATTTCTTCAGAATTCCCCTAGCACCTCTGGGCTGGGAATCTCCCCCACAGACCTTGACCAACGTCCCCTGGCACTTTGAACAGTCCTTAGTTTGACTTGACAGCACGCTCCAGTCTTCGCCTTCTCC----------------AGTAGCACAGCAGCATCTAACCAATGAGCAGTCTTCTTGGCACTGTGTGTA-TTTTTACCATCCTAGATAATGAAGCCCAGAGCCAAGGAAGATAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14181382 888 - 49578535 aAACGCCACCTATAAGT-GCCATCTTTGGAACATTTGTCCTGTAGAAAGAAGCATCTGCTTCGAACCAACAGC--AGACCAAATGGCGTT-TCTCTTATCTTTACTACTGTGTGGGTTTCTCCATAAACGAGAACTGGCAAAGGGCCTCATCACAGCTCTGTGGCCC----TCTCCGGGCTCAGAGACTGCCTGCCGTCACCAGCCCAGCTGGCA-GCAAATGGTCACAGGTTCTGTTCCCACGTTTCAGTCAGTCTATCTAGAAAACAGTGGAACTCCTGAAACATTCCCCTG--CTCAAATGTAACGGGAAAAGGACAATATAAAATTTCAGGCTTCTGCGTTTGCACTGCTCCCCTGGGGAAAGCAACAT--------------GGTGGTTGGGAGCTCCGCATTAAACAAGGAAACTCGAT-GTGT-----ATCCGGC---GTCACT-GAGCACTCAGGTCTGCAGACGGGAGAGA--GATGTAATGCTCA----TTCCTATTCCCACGTCTTTGATCTTTTCACGTGAAGCTAATATTTGAGAATTC-TTCTTTCCCTGGAGTGTCGAA---CCTGTCAACTCACCATAAAGACAAGGAAGAGATTTCCTTGTTCAACAAGTGAG----AACAGATGTGGCCAAGTGTTGATTATTATTGTAAGAGATGAATACAAATGTTATCGTTACTGAGTGCTAAGCTTTGTTTCTTTCTTCAGAGTTCCCCTCGCCCCTCCAGGCTGGGAATCTCACCCACAGACCTTGGTAAACGTCCTCTGGCACTTTGAGCAGTCCTTAGTTTGACATGACAGCATGCTACAGTCTTCCCTTTCACC----------------AGTAGCACGGCAGCATCTAACCACCTGGCACTCTTCTTGGCACCGCCTGTA-CTTTTACCATCCTGGGTATTGAATCCCAGAGCCGAGGAAGAGAAAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178770068 883 + 195471971 AAAGGGCATCTATCCATGGTTATCTTTGAAACATTTCTCCCTTGGAGA-AAGTGGCTGTTTAGAGCCGGCACT--CAACCACGTGGTTTTCTCCCTTATCTTTACTGCTGTATGGATCTCTTTGTGACCAGTGGCTGGCAGGGG---------------------CC----TCTC-------------TGCCCGCAG-CACCAGCCTGACTGGCACGAGAGTCATTTCAGGTTCTGTTGCCATGTTTCAGTCAATCTGTCTAGAGAACAGTGACGCTCCTGAAACACTCAGATGCTCTCACATGTCATGC-AAAAGGACAAAGGACAATCCCAGG-TTCTGTGTTTGAACTA-TCCCCCAGGGAAAGTAACATCACTATTTGGGGCCCATTGATGGGAGCCCATCTGTGAAGTGGGAACCATGGCAGATT-----CTCCAGAGAGATTCCT-GTCTCTT----TCCCCACACTGCAGAGACGGATGTGCTGACCATTGGTTCCTAGTCCCAGACTTTTGATC--TTCACAAGAAACCAATACCATTGAATTGTGTCGTTCCCTGGATCATCAGACTGCCTGTCAGCTCCCCACAGAGATAAGAAAGAGATCT-----TGCCACACACGAA----GACAGATGTGACCAAGTACTAATTATTATCTTCAGAGGTGAATGCAAATGTCACCATTATTGAGCACTGAGATTTATTTTTTCCT---GAACTCCCA-AGAGCCTCTGAGCTG-GAATCTGGCCTTCAGACCTTGACAGATGTCCTCTGCTAGTCTGAGCAGGTTCTGGATTGATGTGACATCACGTGGCCATCCTCCCTCCCCCCCCCCTCTCTCTCTTTGAGTGCTACAGCAGCATCTGACCAAATGCTGCTCACTGGGGAACCATGTGTGTTTTTTGCCATTCTTGCCAATGAAGCTCATAGCTGAGGgagggagag i mm10.chr1 I 1069 I 214 s canFam3.chr7 36338429 885 + 80974532 -------GTCTGGGAGT-GCTATCTTTGGAATATTTATGCCCTAGAACAAAGCCACTGCTTAGAACCAACAGT--AAACCAAATGGCTT--TCTCTCATCTTTCCTACCACGTGGGTTTCCTCATAAGTGATAACTGGCAAAAGATCCCTCACCAGCTCTGTGCCCCCCCTCCCCCGGGCCTAGAGAGTGCCCCCAACCCCCAGCCCAGCTGGCACGCGAGATGTTTCAGGGCCCATTCCCATATTTCAGTCAATCTGTCTAGAGAACAATGGAACTCCTGAAACATCTGAATG--CTCAAATGTAATGTGAAAAGGACAATGTACAATTTCAGTC-TCTGTGTTTGAACTGCTCCCCTGGGAAAACAAGTGT--------------GGTACTTGGGAACTCATCATTAAATACGGAAACTTGAT-GTGTTTGTATTCCAGC---ATCACTGGAGTGCTCTGGTCTACATACTGTAGAGA--GATGTGATGCTTG----TTCCTATTCCCACAACTTTGATCTTTTTTCACACAGCTGATATTTGAGAATTCTTTCTTTCCCTGGAGTGTCAAGCCTCCTGTCAACTCACCATAAAGGCAAGGAAGAGATTTCCTT-TTCAACAAGTGAG----GACAGATGTGGCCAAGTGTTGATTATTATTGTAAGAGATGAATACAAATGTTATCATTCCTGAGCACTAAACTTTGTTT----CTTCAGAATTCCCCAAAAGCCCCCTGGCTGGG-ATCTCACCCGCAGACCTTGGTAAACATCCTCCACCACTTTGAGCAGTTTCCAGTTTGATGTGACAGCACTTTGTGGTCTTGGGTCTTAC-----------------AGAGGCACAGCAGCTTCTAACCAAACTGCACCCCTCTTGGAACTGTGTG---TTTTTACTGTCCTTGCTAATGAGACCCATAGCAAAGGAAGAGAAAC i canFam3.chr7 C 0 C 0 a score=282483.000000 s hg38.chr1_KI270759v1_alt 176299 82 + 425601 ATAACAAACGAGAGAGCATATTTGATTCTAGGA----GATTTGACTGAAGATGGAGATGGTCAGGTAGGCAATTCAATGGGGAAAG s panTro4.chr1 224928681 82 + 228333871 ATAACAAACGAGAGAGCATATTTGATTCTAGGA----GATCTGACTGAAGATGGAGATGGTCAGGTAGGCAATTCAATGGGGAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226287508 80 - 229942017 ATAACCAAC--GAGAGCATATTTGATTCTAGGA----GATTTGATTGAAGATGGAGATGGTCAGGTAGGCAATTCAATGGGGAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140176488 82 - 143122389 ATAACAAACGAGAGAGCATATTTGAGTCTAGGA----GATTTGATTGAAGATGGAGATGGTCAGGTAGACAATTCAATGGGGAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16890550 82 - 229590362 ATAACAAATGAGACAGCATATTTGATTCTAGGA----GATTTGATTGAAGATGGAGATGGTCAGGTAGGCAATTCAATGGGGAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223653351 82 - 227556264 ATAACAAATGAGACAGCATATTTGATTCTAGGA----GATTTGATTGAAGATGGAGATGGTCAGGTAGGCAATTCAATGGGGAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16704439 82 - 220367699 ATAACAAACGAGACAGCATATTTGATTCTAGGA----GATTTGATTGAAGATGGAGATGGTCAGGTAggcaattcaatggggaaag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82503451 82 + 85787240 ATAACAAATGAGACAGCATATTTGATTCTAGGA----GATTTGATTGAAGATGGAGATGGTCAGGTAGGCAATTCAATGGGGAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14182270 82 - 49578535 ATAACAAACGACACAGCATATTTGATTCTAGGA----GATTTGATTCAAGGTGGAGATGGTCAGGTAGGCGACTCAGTGGGGAAAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36339314 86 + 80974532 ATAACAAATGGGTGGCCATATTGGATTCTGGGAATAGGTTCAGACCAAGGAGGGAGGTTGTCAAACAGGCAGTTCATGGGGGAAAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178770951 214 + 195471971 I a score=18208.000000 s hg38.chr1_KI270759v1_alt 176381 6 + 425601 ACACTT s panTro4.chr1 224928763 6 + 228333871 ACACTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226287588 6 - 229942017 ACACTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140176570 6 - 143122389 ATACtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16890632 6 - 229590362 ACACTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223653433 6 - 227556264 ACACTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16704521 6 - 220367699 acactt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82503533 6 + 85787240 ACACTT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36339400 6 + 80974532 ACATTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178770951 214 + 195471971 I e calJac3.chr19 14182352 0 - 49578535 C a score=7933.000000 s hg38.chr1_KI270759v1_alt 176387 16 + 425601 Atttttta-------tttattga s panTro4.chr1 224928769 16 + 228333871 Atttttta-------tttattga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226287594 16 - 229942017 Atttttta-------tttattta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140176576 16 - 143122389 atttatta-------tttattta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16890638 8 - 229590362 Atttttta--------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223653439 8 - 227556264 Atttttta--------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16704527 8 - 220367699 atttttta--------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82503539 15 + 85787240 Attttttatttttga-------- i chlSab2.chr25 C 0 I 40 e mm10.chr1 178770951 214 + 195471971 I e canFam3.chr7 36339406 0 + 80974532 C e calJac3.chr19 14182352 0 - 49578535 C a score=5476.000000 s hg38.chr1_KI270759v1_alt 176403 10 + 425601 cttattt-----ttt s panTro4.chr1 224928785 10 + 228333871 cttattt-----ttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226287610 10 - 229942017 tttatgt-----ttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140176592 15 - 143122389 tttatttatttattt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16890646 5 - 229590362 -----tt-----ttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223653447 5 - 227556264 -----tt-----ttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16704535 5 - 220367699 -----tt-----ttt i papAnu2.chr1 C 0 C 0 e mm10.chr1 178770951 214 + 195471971 I e canFam3.chr7 36339406 0 + 80974532 C e calJac3.chr19 14182352 0 - 49578535 C e chlSab2.chr25 82503554 40 + 85787240 I a score=655708.000000 s hg38.chr1_KI270759v1_alt 176413 283 + 425601 gatacagagtcttgctctgtcacccaggctggagtgcagtggcacgatctcggctccctgcaacctctgcctcctgagttcaagccattctcctgcctcagccttc-------------ctagtagctgggactgcaggtgcgcaccaccatgcctggctaatttttgcatttttagtagac--ggggtttcaccatattgtccaaggtggtctcgaactcctgacctcgtgatcctcccgcctcagcctcccaaagtgctgggattacaggcatgagccaccatgcctggtcAAGAC s panTro4.chr1 224928795 285 + 228333871 gagacagagtcttgctttgtcacccaggctggagtgcagtggcatgatcttggctcactgcaacctctgcctcctgagttcaagccattctcctgcctcagccttc-------------ctagtagctgggactgcaggtgcgcaccaccatgcctggctaatttttgcatttttagtagagagggggtttcaccatattgtccagggtggtctcgaactcctgacctcgtgatcctcccgtctcagcctcccaaagtgctgggattacaggcatgagccaccatgcctggtcAAGAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226287620 284 - 229942017 gagacggagtcttgctctgccacccaggctggagtgcagtggcacgatctcagctcactgcaacctctgcctcttgagttcaagccattctcctgcctcagccttc-------------ctagtagctgggactacaggtgcgcaccaccatgcctggctaatttttgcatttttagtagagagggggtttcaccatattgtccagggtggtctcgaactcctga-ggcgtgatcctcccgcctcagcctcccaaagtgctgggattacaggcatgagccaccatgcccggtcAAGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140176607 298 - 143122389 gagacagagtctcactctgttgcccagaccggagtgcagtggcacaatcttggctcactgcaacctctgcctcctgagttcaagccattctcctgcttcagcctccagccagtctccagcctgtagccgggactacaggcatgcaccaccatacccagctaatttttgcatttttagtagggagggggtttcaccatgttggccaggctggtctcgaactcctgacctcgtgatcctcccgcctcatcctcccaaagtgctaggattacaggtgtgagccaccatgcccggccAAGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16890651 285 - 229590362 gagacggagtcttgctgtgtcacccaggctggagtgcagtggcgtgatctcagctccctgcaacctctgcctcctgagttcaagccattctcctgcctcagcctcc-------------ccagtaactgggactacaggcgtgcaccactgtgcccagctaatttttgcatttttagtagagatggagtttcaccatgttggccgggctggtctcaaactcctgaccttgtgatcctcctgcctcagcctcccaaagtcctgggattacaggcgtgagccaccatgcctggccAAGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223653452 285 - 227556264 gagacggagtcttgctgtgtcacccaggctggagtgcagtggcgtgatctcagcttcctgcaacctctgcctcctgagttcaagccattctcctgcctcagcctcc-------------ccagtaactgggactacaggcgtgcaccaccgtgcccagctaatttttgcatttttagtagagatggggtttcaccatgttggccgggctggtctcaaactcctgaccttgtgatcctcctgcctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcctggccAAGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16704540 285 - 220367699 gagacggagtcttgctgtgtcacccaggctggagtgcagtggcgtgatctcagctccctgcaacctctgcctcctgagttcaagccattctcctgcctcagcctcc-------------ccagtaactgggactacaggcgtgcaccaccgtgcccagctaatttttgcatttttagtagagatggggtttcaccatgttggctgggctggtctcaaactcctgaccttgtgatcctcctgccctagcctcccaaagtgctgggattacaggcgtgagctaccatgcctggccaagac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82503594 285 + 85787240 gagatggaatcttgctgtgtcacccaggctggagtgcagtggtgcgatctcggctccctgcaacctctgcctcctgagttcaagccattctcctgcctcagcctcc-------------ccagtaactgggactacaggcgtgcaccaccatgcccagataatttttgcatttttagtagagagggggtttcaccatgttggccgggctggtctcgatctcctgaccttgtgatcctcccgcctcagcctcccaaagtgctgggattacaggcgtgagccaccatgcccagccAAGAC i chlSab2.chr25 I 40 C 0 e mm10.chr1 178770951 214 + 195471971 I e canFam3.chr7 36339406 0 + 80974532 C e calJac3.chr19 14182352 0 - 49578535 C a score=9122.000000 s hg38.chr1_KI270759v1_alt 176696 4 + 425601 ACTG s panTro4.chr1 224929080 4 + 228333871 ACTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226287904 4 - 229942017 ACTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140176905 4 - 143122389 ACTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16890936 4 - 229590362 ACTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223653737 4 - 227556264 ACTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16704825 4 - 220367699 acTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82503879 4 + 85787240 ACTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14182352 4 - 49578535 ACTC i calJac3.chr19 C 0 C 0 e mm10.chr1 178770951 214 + 195471971 I e canFam3.chr7 36339406 0 + 80974532 C a score=216708.000000 s hg38.chr1_KI270759v1_alt 176700 58 + 425601 ATTTTTAAGTAAGACCTTCCAATGAGTAATCCTTTATAATCAACATTAGAACTAGACG s panTro4.chr1 224929084 58 + 228333871 AGTTTTAAGTAAGACCTTCCAATGAGTAATCCTTTATAATCAACATTAGAACTAGATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226287908 58 - 229942017 ATTTTTAATTAAGACCTTCCAATGAGTAATCCTTTATAATCAACATTAGAACTAGATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140176909 58 - 143122389 ATTTTTAAGTGAGACCTTCCAATGAGTAATCCTTTATAATCAACATTAGAACTAGATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16890940 58 - 229590362 ATTTTTAAGTAAGACCTTCCAATGAGTAATCCTTTATAATCAACATTAGAACTAGATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223653741 58 - 227556264 ATTTTTAAGTAAGACCTTCCAATGAGTAATCCTTTATAATCAACATTAGAACTAGATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16704829 58 - 220367699 ATTTTTAAGTAAGACTTTCCAATGAGTAATCCTTTATAATCAACATTAGAACTAGATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82503883 58 + 85787240 ATTTTTAAGTAAGACCTTCCAATGAGTAATCCTTTATAATCAACATTAGAACTAGATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14182356 58 - 49578535 ATTTTTAAGTAAGTCCTTGCAGTGAGTCATCCTTTATAATCAGTGTCAGAACTGGATG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36339406 58 + 80974532 ATTCTTAAGTAAGAGCTTCCAGTGAATCATCCTTTATAACCAACATTAGAACTAGATG i canFam3.chr7 C 0 I 27 e mm10.chr1 178770951 214 + 195471971 I a score=65014.000000 s hg38.chr1_KI270759v1_alt 176758 21 + 425601 AGTATTCAGAAATGCATGTTG s panTro4.chr1 224929142 21 + 228333871 AGTATTCAGAGATGCATGTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226287966 21 - 229942017 AGTATTCAGAGATGAATGTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140176967 21 - 143122389 AGTATTCAGAGATGCATGTTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16890998 21 - 229590362 AGTATTCAGAAATGCATGTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223653799 21 - 227556264 AGTATTCAGAAATGCATGTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16704887 21 - 220367699 AGTATTCAGAAATGCATGTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82503941 21 + 85787240 AGTATTCAGAAATGCATGTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14182414 21 - 49578535 GGTGTTCAGAGATGCATGTTG i calJac3.chr19 C 0 C 0 e mm10.chr1 178770951 214 + 195471971 I e canFam3.chr7 36339464 27 + 80974532 I a score=442937.000000 s hg38.chr1_KI270759v1_alt 176779 131 + 425601 TTTTATATGATAACACAAAGGACTGAATACAAACATCATTAACCAAGCTC------TTCTGAGAGCTTGGGGAAAAAGCTGCCCGAGGGTACCCTGCTTTGTGTGCATGTGATATGTTCCATCTGCCTGAAATGTTC s panTro4.chr1 224929163 131 + 228333871 TTTTATATGATAACACAAAGGACTGAATACAAACATCGTTAACCAAGCTC------TTCTGAGAGCTTGGGGAAAAAGCTGCCTGAGGGTACCCTGCTTTGTGTGCATGTGATATGTTCCATCTGCCTGAAATGTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226287987 130 - 229942017 TTTTATATGAT-ACACAAAGGACTGAATACAAACATCGTTAACCAAGCTC------TTCTGAGAGCTTGGGGAAAAAGCTGCCCAAGGGTACCCTGCTTTGAGTGCATGTGATATGTTCCATCTGCCTGAACTGTTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140176988 131 - 143122389 TTTTATATGATAATACAAAGGACTGAATACAAACATCGTTAACCAAGCTC------TTCTGAGAGCTTGGGGAGAAAGCTGCCCGAGGGTACCCTGCTTTGAGTGCATGTGATATGTTCCATCTGCCTGAAATGTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16891019 137 - 229590362 TTTTATATGATAATACAAAGGACTGAATACAAACATTATTAACCAAACTCAGAAGTTCTTGAGAGCTTGGGGAAAAAACTGCCCGAGGGTACCCTGCCTTGCGTGCATGTGATATGTTCCATCTGCCTGAAATGTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223653820 137 - 227556264 TTTTATATGATAATACAAAGGACTGAATACAAACATTATTAACCAAACTCAGAAGTTCTTGAGAGCTTGGGGAAAAAACTGCCCGAGGGTACCCTGCATTGCGTGCATGTGATATGTTCCATCTGCCTGAAATGTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16704908 137 - 220367699 TTTTATATGATAATACAAAGGACTGAGTACAAACATTATTAACCAAACTCAGAAGTTCTTGAGAGCTTGGGGAAAAAACTGCCCGAGGGTACCCTGCCTTGCGTGCATGTGATATGTTCCATCTGCCTGAAACGTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82503962 137 + 85787240 TTTTATATGATAATACAAAGGACTGAATACAAACATTATTAACCAAACTCAGAAGTTCTTGAGAGCTTGGGGAAAAAACTGCCCGAGGGTACCCTGCTTTGTGTGCATGTGATATGTTCCATCTGCCTGAAATGTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14182435 131 - 49578535 TTTCATATGACAATGCAAAGGGCTGAATACAAACATTGTTAACTAAAGTC------TTCTGAGAGCTTGGGGGAAAAACTGCCCGAGGGCACCCTGCTTTGTGTGCATGTGATATGTTCCATCTGCCTGAAATGTTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36339491 128 + 80974532 TTTTCTCTGAAAATCCAGAGGGCTGAATATAAACATCATTAATAAGGCTC------TTCTGAGGGCTTGGG--ACAGACTGTCTAAGGGCTCCCTGCTTTCTACACAAATGACCTATTCCATCTGCTTGGG-TCTTC i canFam3.chr7 I 27 C 0 e mm10.chr1 178770951 214 + 195471971 I a score=1758534.000000 s hg38.chr1_KI270759v1_alt 176910 562 + 425601 CTTTGAAATAAGAAGCGAGGGCACAGCTGGGTAG-GAGAGGGT-TGGG-AAGG--GGCCCATGGAGGACTCACCTCACTGATGTGCTGTGGAGGTTCGATGAATACATTCCCCGCTTCCCTCCTACCCAGTGTGGCCTGATGATCACGACTAGTGTTCCTACCAGTGAATGGTTCACCCCGAGGCAAATGCGTTCCCTA-------------AGGAAGATATGTGCTGTGAGTTTCCAGTTGTAAGAAGCCAGTGGAGACACCCAGGTAGTC----------------------------------------TGTGTTGTTGAAGCCTCACGATCTGGGAGGGCGGTGTGATGAATCC---CGGGCAGCCACACACAGTTTCCGGCAATACCACATTTCATCAATTCCGTGTTAGAACATTGAGTCCAAGCTGTT-GGAAAAAGCTTCCCCTTCAGGTGTGAGGAGGCCCAGGCAGCAGATGCCAGGACTCACACTCCTGGGCATCATTTATTT-------TGGAAGTTGGGGAAGCAGGTGCCGGACAAAGCTCTGGGTCGTCTTCTTTTGCATCCCC----TCCAGATCTCACAGGGTTTCATGGGTG-CCCTGTGTTTGATGTTCAGTGTGGA s panTro4.chr1 224929294 559 + 228333871 CTTTGAAATAAGAAGCGAGGGCACAGCTGGGTAG-GAGAGGGT-TGGG-AAGG--GGCCCATGGAGGACTCACCTCACTGATGTGCTGTGGAGGTTTGATGAATACATTCCCCGCTTCCCTCCTACCCGGTGTGGGCTGATGATCACGACTAGTGTTCCTACCAGTGAATGGTTCACCCCGAGGCAAATGTGTTCCCTA-------------AGGAAGATGTGTGCTGTGAGTTTCCAGTTGTAAGAAGCCAGTGGAGACGCCCAGGTAGTC----------------------------------------TGTGTTGTTGAAGCCTCACGATCTGGGAGGGTGGTGTGATGAATCC---CGGGCAGCCACACACAGTTTCCGGCAATAC---ATTTCATCAATTCCGTGTTAGAACATTGAGTCCAAGCTGTT-GGAAAAAGCTTCCCCTTCAGGTGTGAGGAGGCCCAGGCAGCAGATGCCAGGACTCACACTCCTGGACATCATTTATTT-------TGGAAGTTGGGGAAGCAGGTGCCGGACAAAGCTCTGGGTCCTCTTCTTTTGCATCCCC----TCCAGATCTCACAGGGTTTCATGAGTG-CCCTGTGTTTGATGTTCAGTGTGGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226288117 557 - 229942017 CTTTGAAATAAGAAGCGGGGGCACAACTAGGTAG-GACGGGGT-TGGG-AAGG--GGCCCATGGAGAACTCACCTCACTGATATGCTGTGGAGGCTCGATGAATACATCCCCCACTTCCCTCCTACCCGGTGTGGGCTGATGATCACCACTAGTGTTCCCACCAGTGCATGGTTCACCCTGAGGCAAATGTGTTCCCTAAGGTGCATTTCAGAGGAAGATGTGTGCTGTGAGTTTCCAGTTCTAAGAAGCCAGTGGAGGCGCCCAGGTAGTC---------------------------------------TTGTGTTGTTGAAGCCTCACGATCTGGGAGGGTGGTGTGATGAATCC---CAGGCAGCCACACA-------------------GTTTCATCAATTCCACGTTAGAACAGTGAGTCCAAGCCGTT-GGAAAAAGCTTCCCCTTCAGGTGTGAGGAGGCCCGGGCAGCAGATGCCAGGACTCACACTCCTGGGCATCATTTATTT-------TGGAAGTTGGGGAAGCAGGTGCCGGACAAAGCTCTGGGTCCTCTTCTTTTGCATCCCC----TCCAGATCTCACAGGGTTTCATGAGCG-CCCTGTGTTTGATGTTCAGTGTGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140177119 575 - 143122389 CTTTGAAATAAGAAGCGAGGGCACAGCTGCGTAG-GATAGGGT-TAGG-AAGG--GGCCCGTGGAGGACTCACCTCACTGATGTGCTGTGGAGGCTCGATGAATACATTCCCCGCTTGCCTCCCACCTGGTGTGGGCTGATGATCACGACTAGTGTTCCCACCGGTGAATGGTTCACCCTGAGGCAAATGCGCTCCCTAAGGTGCATTTCAGAGGAAGATGTGTGCTGTGAGTTTCCAGTTCTAAGAAGCCAGTGGAGATGCCCAGGTAGTC----------------------------------------TCTGTTGTTGAAGCCTCACGATCTGGGAGGGTGGTGTGATGAATCC---CGGGCAGCCACACACAGTTTCTGGCAGTACGACGTTTCATCAATTCCACCTTAGAACAGTGAGTCCAAGCCGCT-GGAAAAAGCTTCCCCTTCAGGTGTGAGGAGGCCCGGGCAGCAGATGCCAGGACGCACACTCTTGGGCATCATTTATTT-------TGGAAGGTGGGGAAGCAGGTGCCGGACAAAGCCCTGGGTCCTCTTCTTTTGCATCCCC----TCCAGATCTCACAGGGTTTCATGAGCA-TCCTGTGTGTGACGTTCAGTGTGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16891156 571 - 229590362 CTTTGAAATAAGAAGCGAGGGCACAACTGGGTAG-GAGAGGGT-TGGG-AAGG--GGCCCGTGGAGGACTCACCTCACTGATGTGCTGTGCAGGCTCGATGAATACATTCCGCGCTCACCTCCTAGCCGGTGTGGGCTGATGATCACGACTGGTGTTCCCACCAGTGAATGGTTCACCCCGAGGCAAATGTGTTCCCTAC-GTGGATTTCAGAGGAAGAGGTGTGCTGTGAGTTTCCAGTTCTAACAAGACAGTGGAGG---CCAGGTGGTC----------------------------------------TCTGTTGTTGGAGCCTGGCGGTCTGGGAGGGTGGTGTGATGAATCC---CGGGCCACCACGCACAGTTTCTGGCAATACGACGTTTCGTCAGTTCCACGTTAGAACAGTGAGTCCAAGCCAGT-GGAGAAAACTTCCCCTTCCGGTGTGAGGAGGCCCGGGCAGCAGATGCCAGGACTCACACTCCTGGGCATCATTTATTT-------TGGAAGGTAGGGAAGCAGGTGCTGGACAAAGCTCTGAGTCCTCTTCTTTTGCATCCCC----TCCAGATCTCAGGGGGTTTCATTGGCA-TCCCGTGTTTGACGTTCAGTGTGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223653957 571 - 227556264 CTTTGAAATAAGAAGCGAGGGCACAACTGGGTAG-GAGAGGGT-TGGG-AAGG--GGCCCGTGGAGGACTCACCTCACTGATGTGCTGTGCAGGCTCGATGAATACATTCCGCGCTCGCCTCCTAGCCGGTGTGGGCTGATGATCACGACTGGTGTTCCCACCAGTGAATGGTTCACCCCGAGGCAAATGTGTTCCCTAC-GTGGATTTCAGAGGAAGAGGTGTGCTGTGAGTTTCCAGTTCTAACAAGACAGTGGAGG---CCAGGTGGTC----------------------------------------TCTGTTGTTGGAGCCTGGCGGTCTGGGAGGGTGGTGTGATGAATCC---CGGGCCACCACGCACAGTTTCTGGCAATACGACGTTTCATCAGTTCCACGTTAGAACAGTGAGTCCAAGCCAGT-GGAGAAAACTTCCCCTTCCGGTGTGAGGAGGCCCGGGCAGCAGATGCCAGGACTCACACTCCTGGGCATCATTTATTT-------TGGAAGGTAGGGAAGCAGGTGCTGGACAAAGCTCTGAGTCCTCTTCTTTTGCATCCCC----TCCAGATCTCAGGGGGTTTCATTGGCA-TCCCGTGTTTGACGTTCAGTGTGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16705045 572 - 220367699 CTTTGAAATAAGAAGCGAGAGCACAACTGGGTAG-GAGAGGGT-TGGG-AAGG--GGCCCATGGAGGACTCACCTCACTGATGTGCTGTGGAGGCTCGATGAATACATTCCGCGCTTGCCTCCTAGCTGGTGTGGGCTGATGATCACGACTGGTGTTCCCACCAGTGAATGGTTCACCCCGAGGCAAATGTGTTCCCTACGGTGGATTTCAGAGGAAGAGGTGTGCTGTGAGTTTCCAGTTCTAACAAGCCAGTGGAGG---CCAGGTGGTC----------------------------------------TCTGTTGTTGGAGCCTGGCGGTCTGGGAGGGTGGTGTGATGAATCC---CGGGCCACCACGCACAGTTTCTGGCAATATGACGTTTCATCAGTTCCACGTTAGAACAGTGAGTCCAAGCCAGT-GGAGAAAACTTCCCCTTCCGGTGTGAGGAGGCCCGGGCGGCGGATGCCAGGACTCACACTCCTGGGCATCATTTATTT-------TGGAAGGTAGGGAAGCAGGTGCCGGACAAAGCTCTGGGTCCTCTTCTTTTGCATCCCC----TCTAGATCTCAGGGGGTTTCATTGGCA-TCCCGTGTTTGACGTTCAGTGTGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82504099 610 + 85787240 CTTTGAAATAAGAAGCGAGGGCACAACTGGGTAG-GAGAGGGT-TGGG-AAGG--GGCCCATGGAGGACTCACCTCACTGATGTGCTGTGGAGGCTCAATGAATACATTCCGCGCTTGCCTCCTACCCGGTGTGGGCTGATGATCACGACTAGTGTTCCCACCAGTGAATGGCTCACCCCGAGGCAAATGTGTTCCCTATGGAGGATTTCAGAGGAAGAGGTGTGTTGTGAGTTTCCAGTCCTAACAAGCCCCTGGAGG---CCAGGTGGTCTCTGTTGTTGGAGGCTGGCGATCTGGGAGGGTGGTGTGATTCTGTTGTTGGAGCCTGGTGATCTGGGAGGGTGGTGTGATGAATCC---C-GGCCACCACGCACAGTTTCTGGCAATACGACGTTTCATCAGTTCCACGTTAGAACAGTGAGTCCAAGCCAGT-GGAGAAAACTTCCCCTTCCGGTGTGAGGAGGCCCGGGCAGCAGATGCCAGGACTCACACTCATGGGCATCATTTATTT-------TGGAAGGTAGGGAAGCAGGTGCCGGAC-AAGCTCTGGGTCCTCTTCTTTTGCATCCCC----TCTAGATCTCAGGGGGTTTCATGGGCA-TCCCGTGTTTGACGTTCAGTGTGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14182566 572 - 49578535 CTTTGAAATAAGAAGCGAGGGCACA-CTGGGTGA-GAGAGGGC-TGGGAAAGG--GGCCCATGGGGGACTCACTTCACTGATGCGCCGTGGAGCGTCGATGAATGCGTTCTCCGCTTGGCTCCTACCAGATGTGGGCTGATGATCTCGAGTAGTGTTCGCAGCAGTGAACGGCTCACCCCGAGGCCAGTGCGTTCCCTAAGGTGGATTTCAGAGGAAGATGTGTGCTGTG-GTTTCCAGTTCTAACAAGCCAGTAGAGACGCCCAGGTGGTC----------------------------------------TC--GTGCCGAAGCCTCACCATCTGGGAGGATGGTGTGACGAATCC---TGGGCCACCACGCACACTTCCTGGTAATATGACGTTTCATCAATTCCACATTAGAACAGTGAGTCCACGCCACT-GGAACAAACTTCCCCTTCAGGTGTTAGGAGGCCCGGGCAGCAGACGCCAGGACTCACCCTCCTGG-CAGCATTTATTT-------TGGGAGGTGGGGAAGCAGGTTCCGCCCAAAGCTCTGGGTCCTCTTCTTTGGCATCCCC----TACAGATCTCAAGGGCTTTCTCGAGTGTTTTTTTGTCTGACGTTCTATGTGAA i calJac3.chr19 C 0 M 754 s mm10.chr1 178771165 456 + 195471971 CTTTAGACTAAGA---GAAGGCATAGCTGGGTAGAGAGGGGGTATTGG-ATGG--ACTCTGCAGAGACCTCGATTTACTACT-TGCTCTGGAGGCCCAGTTCCTGTGTTCTCCACCTGCCTCCTGTCT---------TGCTG---------GGTCTTCTCAC-----------TCAC-------CAGCTGTGT-------------------------GGGCGTGTCATG-GTTCACGGTTCCAAGGGAGCTGTGAGCA--CACATGTGACC----------------------------------------CCTGTTGTTGG----------------------------TGAAGCCATATGGGCA---------------TGGGAATGTGAGCCGTCATCAGTTC---------------------AGGCAGG-GTTGACTATGTCCCATTCAAGTGCAGGAAGTCACAGG-GGCAGAGGCTGGGACCCCTGTTCTCATACCCCATGTTTATAATTGCCTGGAAAGTGGAGAAGGACGTGGTGGTCAAAACTGTAGACCACCTATTCTCCCTGCCTCCATACCTAGGTCTCAGGGAGTTT-GCGGGTA--CTTGTGTCTGATGTTCAATGTAGA i mm10.chr1 I 214 C 0 s canFam3.chr7 36339619 533 + 80974532 CTTATAATTGAGAAGAGAGGACACTGTTGGCTGG-GCTTGGGA-TGGG-AAGGGAGGCCGGTGGGGAACTCGCTTCACTGATGGGCTGTAAAGACTCGATTAATACACTCTTCACACACCTCCTACCTGGAGTGG-CTG-TGACTACTACTGGTGTTCCCACTGATGATTGGTTCACCTATAGGCATA------------GGTGGCTTTCAGAGGAAGGGGTGTGCCATGAGTGTCCAATTCTATGGAACCAATGAGTG--CACACATAGTC----------------------------------------TCAGTTGTTGGGGCCTTGAAGTCTGGGAGTGTGGTATGATAAAG-----CAGGTAACAAGTGCTAGGTTCAGTGAATATGACACTTCATTAAGTC----------AAGTGAGTCCAGGTCATTAGGGGAAAGCTTTCTCCTTCGA---GAGAAAGCACAAGTGGTA--------------TGTTCCTGGGTGTGGCTTCCTT-------TGGAAAGTAGGAGGGTAGGTGCTGGTCAGAGCTCTGGGTCATCTCCTTTTCTGTCTCC----TTTGGATCTCAGGGGGTTTTATGAGTG-CCTGGGGTCTGACATTTAATGTAGA i canFam3.chr7 C 0 C 0 a score=74421.000000 s hg38.chr1_KI270759v1_alt 177472 24 + 425601 ATCCAAGAGCCTGGTGAGGAGAAG s panTro4.chr1 224929853 24 + 228333871 ATCCAAGAGCCTGGTGAGGAGAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226288674 24 - 229942017 ATCCAAGAGCTTGGTGAGGAGAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140177694 24 - 143122389 ATCCAAGAGCCTGGTGAGGAGAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16891727 24 - 229590362 ATCCAAGGGCCTGGTGAGGAGAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223654528 24 - 227556264 ATCCAAGGGCCTGGTGAGGAGAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16705617 24 - 220367699 ATCCAAGGGCCTGGTGAGGAGAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82504709 19 + 85787240 ATCCA-----CTGGTGAGGAGAAG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178771621 24 + 195471971 CTCTGGGAGGCTGATGACAAGAAG i mm10.chr1 C 0 C 0 s canFam3.chr7 36340152 24 + 80974532 ATCCAAGAACTTGGTGAAGAGGAG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14183138 754 - 49578535 M a score=120568.000000 s hg38.chr1_KI270759v1_alt 177496 35 + 425601 CTGTCTCAGAACCAGTCACAATAAAAATAATGATC s panTro4.chr1 224929877 35 + 228333871 CTGTCTCAAAACCAGTCACAATAAAAATAATGATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226288698 35 - 229942017 CTGTCTCAGAACCAGTCACAATAAAAATAATGATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140177718 35 - 143122389 TTGTCACAGAACCAGTCACAATAAAAATAATGATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16891751 35 - 229590362 CTGTCTCAGAACCAGTCACAATAAAAATaatgatc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223654552 35 - 227556264 CTGTCTCAGAACCAGGCACAATAAAAATaatgatc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16705641 35 - 220367699 CTGTCTCAGAACCagtcacaataaaaataatgatc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82504728 35 + 85787240 CTGTCTCAGAACCAGTCACAATAAAAATAATGATC i chlSab2.chr25 C 0 I 336 s calJac3.chr19 14183897 34 - 49578535 CTGTCTCAAAA-TAACAACAACAATAATGATGATC i calJac3.chr19 M 754 C 0 s mm10.chr1 178771645 35 + 195471971 CTGTGTCAGATCCGACTTTGATAAAAGTAATAACT i mm10.chr1 C 0 C 0 s canFam3.chr7 36340176 35 + 80974532 CTGTTTTGGATCTAATCATCATAAATTTAAGGACT i canFam3.chr7 C 0 C 0 a score=-1652.000000 s hg38.chr1_KI270759v1_alt 177531 3 + 425601 -CAC s panTro4.chr1 224929912 3 + 228333871 -CAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226288733 3 - 229942017 -CAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140177753 3 - 143122389 -CAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16891786 3 - 229590362 -aat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223654587 3 - 227556264 -aat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16705676 3 - 220367699 -aat i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14183931 3 - 49578535 -AGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178771680 3 + 195471971 -AGT i mm10.chr1 C 0 C 0 s canFam3.chr7 36340211 3 + 80974532 AAA- i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82504763 336 + 85787240 I a score=396680.000000 s hg38.chr1_KI270759v1_alt 177534 116 + 425601 agttaacatgcatagagcatttgctttgtctcaaggcatgtgctgggtgcacca----ttttc---atcctcacgggttctgctagtgtcctcatgcatagatgaggaaaacaaagcttagag s panTro4.chr1 224929915 116 + 228333871 agttaacatgcatagggcatttgctttgtctcaaggcatgtgttgggtgcacca----ttttc---atcctcacaggttctgctagtgtcctcatgcatagatgcggaaaacaaagcttagag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226288736 116 - 229942017 agttaacatgcatagagcatttgctttgtctcaaggcatgtgctgggtgcacca----ttttc---atcctcacgggttctgttagtgtcctcatgcatagatgaggaaaacgaagcctagag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140177756 116 - 143122389 AGTTAACATGCATAGGGCATTTGCTTTGTCTCAAGGCATGTGCTGGGTGTACCA----TTTTC---ATCCGCACGggttctgctagtgtcctcatgcatagatgaggaaaatgaagcttagac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16891789 120 - 229590362 agttaacgtgcatagagcatttgctttgtctcaaggcatgtgctgggtgcaccatttctttcc---gtcctcacgggttctgctagtgtccttgtgcatagatgaggaaaacgaagcttagag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223654590 120 - 227556264 agttaacgtgcatagagcatttgctttgtctcaaggcatgtgctgggtgcaccatttcttttc---gtcctcacgggttctgctagtgtccttgtgcatagatgaggaaaacgaagcttagag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16705679 120 - 220367699 AGTTAACGTGCATAGAGCATTTGCTTTGTCTCAAGGCATGTGCTGGGTGCACCATTTCTTTTC---GTCCTCACGGGTTCTGCTAGTGTCCTTGTGCATAGATGAGGAAAACGAAGCTTAGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82505099 120 + 85787240 agttaacatgcatagaacatttgctttgtctcaaggcatgtgctgggtgcaccatttcttttc---gtcctcacgggttctgctagtgtcctcgtgcatagatgaggaaaacgaagcttcaag i chlSab2.chr25 I 336 C 0 s calJac3.chr19 14183934 120 - 49578535 AGTTCACACGtatagagcatttgctttgtctcaaggcatatcctggctgcaccatttctcttc---atcctcacgagttctgctagtgtcctcaagtatagatgaggaaactgaagcttagag i calJac3.chr19 C 0 C 0 s mm10.chr1 178771683 117 + 195471971 AATGAACCTGCATAGAGTATTAGA-----CTCAAGGCAAAGGATAAAGCAGCCACCTCTCTGCTCTGGTCTCATGGGACCTAACAGTGCCGTCCAGGACCGACATGGAAG-CGGAGCTTAGAG i mm10.chr1 C 0 I 937 s canFam3.chr7 36340214 112 + 80974532 AGTTAATGCGAatagaacatttac-ttgtgtcaagcagtgtgctaattgtatca-----ttta---gtttttacaggttctattagtg-cctcacttgtggataagaaaaatgaa-cctagag i canFam3.chr7 C 0 C 0 a score=1106549.000000 s hg38.chr1_KI270759v1_alt 177650 375 + 425601 aggtcaaaagagctgtccgaggtcacccagctggggttgcaatccagg-------tctgcctgaccccagagctccagctctGAACCTCTGTG----CTTCCTGACCTGGCTTCAGTGCCTGTGAGTGTCACAGTCTCACCACAGCTGGTGTTACCATAGCTACTTAACAGCTGGTGTTGGGGGAGCGGGGAAAGTGCAGAAATGAAGTTTGCGTTGTTAACAAGAAATTTTGCTAATTAATTTTGGGGGGACA-CATTGAGCAAGTCCGCCCAGGTGCATGTTCCCAC-GGTCCCATT-CCAGTGG--GCAGTTGAATGCAC--------------ACGTATGCAT--------------------------------GAAGGGCGTGGGTAGTGAACTTGTAACAGCAGAGGAAGCAGAAGGTT-AAAAGGAGAAG s panTro4.chr1 224930031 375 + 228333871 aggtcaaaagagctgtccgaggtcacccaactggggttgcaatccagg-------tctgcctgaccccagagccccagctctGAACCTCTGTG----CTTCCTGACCTGGCTTCAGTGCCTGTGAGTGTCACAGTCTCACCACAGCTGGTGTTACCATAGCTACTTAACAGCTGGTGTTGGGGGAGCGGGGAAAGTGCAGAAATGAAGTTTGCATTGTTAACAAGAAATTTTGCTAATTAATTTTGGGGGGACA-CATTGAGCAAGTCAACCCAGGTGCATGTTCCCAC-GGTACCATT-CCAGTGG--GCAGTTGAATGCAC--------------ACGTATGCAT--------------------------------GAAGGGCGTGGGCAGTGAACTTGTAACAGCAGAGGAAGCAGAAGGTT-AAAAGGAGAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226288852 367 - 229942017 aggtcaaaagagctgtccgaggtcacccagctggggttgcaatccagg-------tctgcctgaccccagagccccagctttGAACCTCTGTG----CTTCCTGGTGTGGCTTCAGTGCCTGTGAGTGTCACAGTCTCACCGCAGCTGGTTTTACCATAGCTACTTAACAGCTGGTGTTGGGGGAGCGGGGAAAGTGCAGAAATGAAGTTTACGTTTTTAACAAGAAATTTTGCTAATTAATTTTGGGGGGACA-CATTGAGCA--------CAGATGCATGTTCCCAC-GGTACCATT-CAAGTGA--GCAGTTCAATGCAC--------------ACGTATGCAT--------------------------------GAAGGGCATGGGTAGTGAACTTGTAACAGCAGAGGAAGCAGAAGGTT-AAAAGGAGAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140177872 358 - 143122389 aggtcaaaagagctgtccgaggtcacccagctggggttgcagtccagg-------tctgcctgaccccagagccccagctctgaacctctggg----ctTCCTGACCTGGCTTCAGTGC----------------CTCACCACAGCTGGTTTTACCATAGCTACTTAACAGCTGGTGTTGGGGGAGCAGGGAAAGTGCAGAAATGAAGTTTACGTCGTTAACAAGAAATTTTGCCAATTAATTTTGGGGGG-CA-CATTGAGCAAGTCCGCCCACGTGCATGTTGCCAC-AGTACCATT-CAAGTGG--GCAGCTGAATGCAC--------------ACGTATGCGT--------------------------------GAAGGGCACGGGTAGTGAACTTGTAACAGCAGAGGAAGCAGAAGGTT-AAAAGGAGAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16891909 369 - 229590362 aggtcaaaattgctgtccgaggtcacccagctggggttgcagtccagg-------tctgcctgaccccagagccccagctctGAACCTCTGTG----CTTCCTGACCTGGCTTCAGTGCCTGTCAGTGTCACAGTCTCA------CTGGTTTTACCATAGCTGCTTAACAGCTGGTGTCAGGGGAGCGGGGAAAGTGCAGAAATGAAGTTTACATCATTAACAAGAAATTTTGCTAATTAATTTTAGGGAGACA-CATTGAGCAAGTCCGCCCAGGTGCATGTTGCCAC-GGTACTATT-CAAGTGG--GCAGTTGAATGCAC--------------ACGTATGCAT--------------------------------GAGGGGCATGGGTAGTGCACTTGTAACCGCAGAGGAAGCAGAAGGTT-AAAAGGAGAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223654710 369 - 227556264 aggtcaaaattgttgtccgaggtcacccagctggggttgcagtccagg-------tctgcctgaccccagagccccagctctgaacctctgtg----cttcctGACCTGGCTTCAGTGCCTGTCAGCGTCACAGTCTCA------CTGGTTTTACCATAGCTGCTTAACAGCTGGTGTCGGGGGAGCGGGGAAAGTGCAGAAATGAAGTTTACATCATTAACAAGAAATTTTGCTAATTAATTTTAGGGAGACA-CATTGAGCAAGTCTGCCCAGGTGCATGTTGCCAC-GGTACCATT-CAAGTGG--GCAGTTGAATGCAC--------------ACGTATGCAT--------------------------------GAGGGGCATGGGTAGTGCACTTGTAACCGCAGAGGAAGCAGAAGGTT-AAAAGGAGAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16705799 368 - 220367699 AGGTCAAAAGAGCTGTCCGAGGTCACCCAGCTGGGGTTGCAGTCCAGG-------TCTGCCTGACCCCAGAGCCCCAGCTCTGAACCTCTGTG----CTTCCTGACCTGGCTTCAGTGCCTGTGAGAGTCACAGTCTCA------CTGGTTTTACCATAGCTGCTTAACAGCTGGTGTCGGGGGAGCGGGGAAAGTGCAGAAATGAAGTTTACATCATTAACAAGAAATTTTGCTAATTAATTTTAGGGAGACA-CATTGAGCAAGTCCGCCCAGGTGCATGTTGCCAC-GGTACCATT-CAAGTGG--GCAGTTGAATG-AC--------------ACGTATGCAT--------------------------------GAGGGGCATGGGTAGTGCACTTGTAACCGCAGAGGAAGCAGAAGGTT-AAAAGGAGAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82505219 368 + 85787240 aggtcaaaagagctgtccgaggtcacgcagctgggcttgcaatccagg-------tctgcctgaccccagagccccagctctGAATCTCTGTG----CTTCCTGACCTGGCTTCAGTG-CTGTGAGTGTCACAGTCTCA------CTGGTTTTACCATAGCTGCTTAACAGCTGGTGTCGGGGGAGCGGGGAAAGTGCAGAAATGAAGTCTACATCATTAACAAGAAATTTTGCTAATTAATTTTAGGGGGACG-CATTGAGCAAGTCCTCTCAGGTACGTGTTGCCAC-GGTTGCATT-CCAGTGG--GCAGTTGAATGCAC--------------ACGTATGCAT--------------------------------GAAGGGCATGGGTAGTGCACTTGTAACCGCAGAGGAAGCAGAAGGTT-AAAAGGAGAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14184054 398 - 49578535 aggtcaaaagagctgtccaaggtcacccagctggggttgcagtccagtgtccagctccgcctgaccccggaacccccgctctGAACTTCTCCA----CTTCCTGGCCTGGCTTGAGTGCCTGTGAGAGGCACCGTCTCGCCAAGGTTGGTTTCACCACAGCTAC-TGCCAGCTGGTTTGGGGGGAGTAGGGAAAGTGCAGAAATGAAGTTTAATTTGTTAACGAGAAGTTTTGCTAATTAATTTTTGGGGGACA-TGTTGAGCAAGTCCACACA-GTGCATGTTGCCAC-GGTACCCCCGAAAGTGGGTGCACTTTATTGCACATGAAAATCTGTGAATGCATACAT--------------------------------GAAGGGCACATGTGGTGACCTTGAAGCAGCAGGGCCCGCAGAAGGCTAAAAAGGAGAAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36340326 408 + 80974532 gggtcaagagagtggtccaaggtcacccagctggaactgaaatccaga-------tttgtctgaccccaaaatccacgccctGAGCTGCTGGGTGTCCTCCCAGACCTGGCTTGTGTGCCTGGGGAAGTCA--GTCTCCCCCATGCTCCCTATCCTGCAGGTACTTA-TATCTGCTTTAGGAGAGCAGGGGGAGGTGCAGGAATAAAGCTGAGATAATTAAGAAGAAACTTCACTCATTCATGTGGGGAGGATGTTATTGAGCACGTCTGCCCTGGTACATGCTGCCACAGGTGCCATCACAAGTAA--AT-TCAGAACACGC--------------ACCTACACATGGAATGCGCCATTCTGGTGATGACTGCGCCAGGAATGGTGCGTGCAGTGGTCCT--AAGAGTGGAGTGGCCAGAGGCTA-AAAAGGAGAAG i canFam3.chr7 C 0 I 207 e mm10.chr1 178771800 937 + 195471971 I a score=1067756.000000 s hg38.chr1_KI270759v1_alt 178025 369 + 425601 CTAAATACACCTCAGTGCTGGAACGTTCATTTTGCAGATTTTTGTCAGGTTTGGCAGAGAA--ACCTCCAAGCTCTAATCTTACAGGGCGACTACTTGGGAATCAATCGGGAAGCATATTTCCTGTTACTTTAGTGTAGCGAAGGCTTCTCCTCGTTCTTTTCTACTCTTAGTAATGTATTAGTAAA--ATGTGTTTAT-GAAAATCTG------AGTTTCCTCATTCCACCTTTATGTTTTTCCTTATGTCTTTATAAAATCTGTAAGTTAGTTTCCTCATTCCACATTTATGTTTTTCCTCATTCTAATGCCCTCTCTTGAATTGTTAGTTCTTTGCTTTAATGACGCTTTGTTAGGCCTGGGCTGATCCCACGCCAT s panTro4.chr1 224930406 369 + 228333871 CTAAATACACCTCAGTGCTGGAACGTTCATTTTGCAGATTTTTGTCAGGTTTGGCGGAGAA--ACCTCCAAGCTCTAATCTTACAGGGCGACTACTTGGGAATCAATCGGGAAGCATATTTCCTGTTACCTTAGCGTAGCGAAGGCTTCTCCTTGTTCTTTTCTACTCTTAGTAATGTATTAGTAAA--ACGTGTTTAT-AAAAATCTG------AGTTTCCTCATTCCACCTTTATGTTTTTCCTTATGTCTTTATAAAATCTGTAAGTTAGTTTCCTCATTCCACATTTATGTTTTTCCTCATTCTAATGCCCTCTCTTGAATTGTTAGTTCTTTGCTTTAATGACGCTTTGTTAGGCCTGGGCTGATCCCACGCCAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226289219 370 - 229942017 CTAAATACACCTCAGTGCTGGAACATTCATTTTGCAGATTTTTGTCAGGTTTGGCAGAGAA--ACCTCCAAGCTCTTATCTTACAGGGCAACTACTTGGGAATCAATCAGGAAGCATATTTCCTGTTACCTTAGTGTAGCAAATGCTTTTCCTCGTTCTTTTCTACTCTTAGTAATGTATTAGTAAA--ATGTGTTTATAAAAAATCTG------AGTTTCCTCATTCCACTTTTATGTTTTTCCTTATGTCTTTATAAAATCTGTAAGTTAGTTTCCTCATTCCACATTTATGTTTTTCGTCATTCTAATGCCCTCTCTTGAATTGTCAGTTTTTTGCTTTAATGACGCTTTGTTAGGACTGGGCTGATCCCACACCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140178230 369 - 143122389 CTAAATACACCTCAGTGCTGGAACATTCATTTTGCAGATTTTTGTCAGGTTTGGCGGAGAA--ACCTCCAAGCTCTAATCTTACAGGGCAACTACTTGGGAATCAATCAGGAAGCATATTTCCTGTTACCTTAGTGTAGCGAATGCTTTTCCTCGTTCTTTTCTGCTCTTAGTAATGTCTTAGTAAA--ATGTGTTTAT-AAAAATGTG------AGTTTCCTCATTCCACCTTTATGTTTTTCCTTATGTCTTTATAAAATCTGTAAGTTAGTTTCCTCATTCCACATTTACGATTTTCCCCATTCTAATACCCTCTCTTGAATTGTTAGTTCTCTGCTTTAATGACACTTTTTTAGGACTGGGCTGATCCCACACCAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16892278 369 - 229590362 ATAAATACACCTCAGTGCTGGAACATTCATTTTGCAGATTTTTGTCAGGTTTGGCGGAGAA--ACCTCCAAGCTCTAATCTTACAGGGCAGCTACTTGGGAATCAATCAGGAAACATATTTCCTGTTACCTTAGTACAGCAAATGCTTTTCCTCGTTCTTTTCTACTCTTAGTAATGTATTAGTAAA--ATGTGTTTAT-AAAAATCTG------AGTTTCCTCATTCCACCTTTATGCTTTTCCTTATGTCTTTATAAAATCTGTAAGTTAGTTTCCTCATTCCACATTTATGCTTTTCCTCAATCTAATGCCCTTTCTTGAATTGTTAGTTCTTTGCTTTAATGATGCTTTGTTAGGACTGGGCTGATACCACGCCAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223655079 369 - 227556264 CTAAATACACCTCAGTGCTGGAACATTCATTTTGCAGATTTTTGTCAGGTTTGGCGGAGAA--ACCTCCAAGCTCTAATCTTACAGGGCAGCTACTTGGGAATCAATCAGGAAACGTATTTCCTGTTACCTTAGTACAGCAAATGCTTTTCCTCGTTCTTTTCTACTCTTAGTAATGTATTAGTAAA--ATGTGTTTAT-AAAAATCTG------AGTTTCCTCATTCCACCTTTATGCTTTTCCTTATGTCTTTATAAAATCTGTAAGTTAGTTTCCTCATTCCACATTTATGTTTTTCCTCAATCTAATGCCCTTTCTTGAATTGTTAGTTCTTTGCTTTAATGATGCTTTGTTAGGACTGGGCTGATACCACGCCAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16706167 369 - 220367699 CTAAATACACCTCAGTGCTGGAACATTCATTTTGCAGATTTTTGTCAGGTTTGGCGGAGAA--ACCTCCAAGCTCTAATCTTACAGGGCAGCTACTTGGGAATCAATCAGGAAACATATTTCCTGTTACCTTAGTACAGCAAATGCTTTTCCTCGTTCTTTTCTACTCTTAGTAATGTATTagtaaa--atgtgtttat-aaaaatCTG------AGTTTCCTCATTCCACCTTTATGTTTTTCCTTATGTCTTTATAAAATCTGTAAGTTAGTTTCCTCATTCCACATTTATGTTTTTCCTCATTCTAATGCCCTTTCTTGAATTGTTAGTTCTTTGCTTTAATGATGCTTTGTTAGGACTGGGCTAATACCAtgccat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82505587 371 + 85787240 CTAAATACACCTCAGTGCTGGAACATTCATTTTGCAGATTTTTGTCCGGTTTGGCGGAGAAATACCTCCAAGCTCTAATCTTACAGGGCAGCTACTTGGAAATCAATCAGGAAGCATATTTCCTGTTACCTTAGTATAGCAAATGCTTTTCCTCGTTCTTTTCTACTCTTAGTAATGTATTAGTAAA--ATGTGTTTAT-AAAAATCTG------AGTTTCCTCATTCCACCTTTATGCTTTTCCTTATGTCTTTATAAAATCTGTAAGTTAGTTTCCTCATTCCACATTTATGTTTTTCCTCAATCTAATGCCCTTTCTTGAATTGTTAGTTCTTTGCTTTAATGATGCTTTGTTAGGACTGGGCTGATACCACGCCAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14184452 272 - 49578535 CTAAACACATCTCAGTGCGGGAACATTCA-CTTGCAGA-TTGTGTCGGGTTTGG-GGAGAC-------------------------GGCAACCACTTGG-ATTCAGTCAGGAAGAATA-TTCTTGTTACCTTAGGACAGCACATGTTTTTCCTGTCTCTTTTCTACTCTCAGTAATGTATTCGTAAATTATGTGTTAAT-AAAAGTCTG------AGTCTCCCCATTCCACATTTATG-TTTCCCTTACGTC-------------------------------------------TTTTCCTCCTTTGAGTGC-------------------------CTTTCATGACGCTTTGTTAGGACTGGCCTGATACCAAGCC-- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36340941 323 + 80974532 ttaaaaaaaTCTCAGTGCTGGACTATTCACTTAGCTAA-TTTTGTCAGGTTTGGTGTGGAA--ATC-CCATATTCTAATTATGTAGAACACCTACTGGGGATTCAACCCGAAAAAATATGT--TTTTATCTTAGCATCTCAAATG-TTTTCCTGTTTCTTTTCTACTCTTAGTCATATATCAGTGAG--GTGTTGTTCT-GAGAATCTGTAAGTTATCTTCCTCA-TCTGCCTTTACGTGTCTCCTTCTGTC-------------------------------------------TTCCCTTTATTCTGCTACCTCTACCTGAACCACCACTCTTC--CCTGAATGGTGCTTTGTCAAGAGTGACCAGATACCAAGGGG- i canFam3.chr7 I 207 C 0 e mm10.chr1 178771800 937 + 195471971 I a score=2081775.000000 s hg38.chr1_KI270759v1_alt 178394 613 + 425601 TTTTTT----ATTTCTTCTGGTTTGATTTCTGCTTACACCTCAAAGA-----TGTTTACCTTCATATCTTC----TCTTTCCC----TTTACCTGTGACCTCTCTGCCTTGCCTCTCTTAATAAGTGTTAATAATGCTGGGTTACACTTTAACTCACTTTGGGCAGTATTCTAAATCTTAATCTCTTCAAAGGAAGTGCTAATGAAATGTCCCACCATTATGTATCTGTGTTCTCTTACAAATGCAGATGAAGAGCCA----TTCAATGGAGCCACATAACTG---CCTTTCCCATCAAGCCTTGAACTGCAAGTAAAGGGGCCTGATTGTGAGGAGTCAGACTCACCATCTAGGTCG-CCTGACAGAGGCCCCTCCTAACCCTGTCCCTGGACACT--GTAACTTCTCTAAGACATT--------------------------TGATGGTGACCAGGCACTCCACTCGTCCATGTAGTTTCTGGGATGGATTCCTCTCTGGAATATTAGACTGCCTCACAGATTA-AACTGCT---AAAGGAATTTTGCAGCAAAATGAAATAGATTTTGGAGCATTGTttggagattggagatttggactttgttcc-aaattgcaga-tttggagattgTTCCAACAATTTGG--------------------------------AGctgcttctcctccttcttctcctt s panTro4.chr1 224930775 617 + 228333871 TTTTTT----ATTTCTTCTGGTGTGATTTCTGCTTACACCTCAAAGA-----TTTTTACCTTCATATCTTC----TCTTTCCC----TTTACCTGTGACCTCTCTGCCTTGCCTCTCTTAATAAGTGTTAATAATGCTGGGTTACACTTTAACTCACTTTGGGCAGTATTCTAAATCTTAATCTCTTCAAAGGAAGTGCTAATGAAATGTCCCACCATTATGTATCTGTGTTCTCTTACAAATGCAGATGAAGAGCCAAACATTCAATGGAGCCACATAACTG---CCTTTCACATCAAGCCCTGAACTGCAAGTAAAGGGGCCTGATTGTGAGGAGTCAGACTCACCATCTAGGTCA-CCTGACAGAGGCCCCTCCTGACCCTGTCCCTGGACACT--GTAACTTCCCTAAGACATT--------------------------TGATGGTGACCAGGCACTCCACTCGTCCATGTAGTTTCTGGGATGGATTCCTCTCTGGAATATTAGACTGCCTCACAGATTA-AACTGCT---AAAGGAATTTTGCAGCAAAATGAAATAGATTTTGGAGCATTGTTTGGAGATTGGAGATTTGGACTTTGTTCC-AAATTGCAGA-TGTGGAGATTGTTCCAACAATTTGG--------------------------------AGCTGcttctcctccttcttctcctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226289589 616 - 229942017 TTTTTT----ATTTCTTCTGGTTTGATTTCTGCTTACACCTCAAAGA-----TTTTTACCTTCATGTCTTC----TCTTTCCC----TTTACCTGTGGCCTCTCTGCCTTGCCTCCCTTAATAAGTGTTAATAATGCTGGGTTACACTTTAACCCACTTTGGGCAGTATTCTAAATCTT-ATTTCTTCAAAGGAAGTGCTAATGAAATGTCCCACCATTATGTATCTGTGTTCTCTTACAAATGCAGATTAAGAGCCCAACAGTCAATGGAGCCACATAACTG---CCTTTCACATCAAGCCCTGAACTGCAAGTAAAGGGGCCTGATTGTGAGGAGTCAGACTCACCATCTAGGTCA-CCTGACAGAGGCCCCTCCTAACCCTGTCCCTGGACACT--GTAACTTCTCTAAGACATT--------------------------TGATGGTGACCAGGCACTTCACTCGTCCATGTAGTTTCTGGGATGGATTCCTCTCTGGAATATTAGACTGCCTCACAGATTA-AACTGAT---AAAGGAATTTTGCAGCAAAATGAAGTAGATTTTGGAGCATTGTTTGGAGATTGGAGATTTGGACTTTGTTCC-AAATTGCAGA-TTTGAAGATTGTTCCAACAATTTGG--------------------------------AGCTGcttctcctccttcttctcctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140178599 614 - 143122389 TTTTTT----ATTTCTTCTGGTTTGATTTCTACTTACACCTCAAAGA-----TTTTTACCTTCATATCTTC----TCTTTCCC----TTTACCTGTGACCTCTCCGCCTTGCCTCCCTTAATAAGTGTTAATAATGCTGGGTTACACTTTAACTCACTTTGGGCAGTATTCTAAATCTT-ATCTCTCCAAAGGAAGTGCTAATGAAATGTCCCACCATTATGTATCTGTGTTCTCTTGCAAATGCAGATTAAGAGTCAACCATTCAATGGAGCCACGTAACTG---CCTTTCACATCAAGCCCTGAACTGCAAGTAAAGGGACCTGACTGTGAGGAGTCAGACTCACCATCTAGGTCA-CCTGACGGAGGCCCCTCCTAACCCTGTCGCTGGACACT--GTAACTTCTCTAAGACATT--------------------------TGATGGTGACCAGGCGCTCCACTCATCCATGTAGTTTCTGGGATGGATTTCTCTCTGGAATATTAGACTGCCTCACAGATTA-AACTGCT---AAAGGAATTTTGCAGCAAAATGAAATAGATTTTGGAGCATTGTTTGGAGATTGGAGATTTGGACTTTATTCC-AAATTGCAGATTTTGGAGATTGTTGCAACAATTTGG--------------------------------GGctgctt---ctccttcttctactt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16892647 620 - 229590362 GTTTTT----ACTTCTTCTGGTTTGATTTCTACTTACACCTCAAAGA-----TTTTTACCTTCCTATCTTCTCTGTCTTTCCC----TTTACCTGTGACCTCTCTGCCTTGCCTCCCTTATTAAGTGTTAATAATGCTGGGTTACACTTTAACTCACTTTGGCCAGTATTCTAAATCTT-ATCTCTCCAAAGGAAGTGCTAGTGAAATGTCCCACCATTACCTATCTGTGCTCTCTTACAAATGCAGATTAGGAGCCAAACATTCAGTGGAGCCACATAACTG---CTTTTCATATCAAGCCCTGAACAGCAAGTAAAGGGGCAGGATTATGAGGAGTCAGACTCCCCATCTAGGTCA-CCTGTCAGAGGCCCCTCCTCACGCTGTCGCTGGACACT--GTCACTTCTCTAAGACATT--------------------------TGATGGTGACCAGGTGCTCCACTCGTCCATGTAGTTTCTGGGATGGATTCCTCTCTGGAATATGAGACTGCCCCACAGATTA-AACTGAT---ACAGGAATTTTGCAGCAAAATGAAATAGATTTTGGAGCATTGTTTGGAGATTGGAGATTTGGACTTTGGTCC-AAATTGCAGA-TTTGGATATTGTTCCAACAATCTGG--------------------------------AGCTGcttctcctcctccttcttctt i rheMac3.chr1 C 0 I 422 s macFas5.chr1 223655448 620 - 227556264 GTTTTT----ACTTCTTCTGGTTTGATTTCTACTTACACCTCAAAGA-----TTTTTACCTTCATATCTTCTCTGTCTTTCCC----TTTACCTGTGACCTCTCTGCCTTGCCTCCCTTATTAAGTGTTAATAATGCTGGGTTACACTTTAACTCGCTTTGGCCAGTATTCTAAATCTT-ATCTCTCCAAAGGAAGTGCTAGTGAAATGTCCCACCATTACCTATCTGTGCTCTCTTACAAATGCAGATTAGGAGCCAAACATTCAGTGGAGCCACATAACTG---CTTTTCATATCAAGCCCTGAACAGCAAGTAAAGGGGCAGGATTGTGAGGAGTCAGACTCCCCATCTAGGTCA-CCTGTCAGAGGCCCCTCCTCACGCTGTCGCTGGACACT--GTCACTTCTCTAAGACATT--------------------------TGATGGTGACCAGGCGCTCCACTCGTCCATGTAGTTTCTGGGATGGATTCCTCTCTGGAATATGAGACTGCCCCACAGATTA-AACTGAT---ACAGGAATTTTGCAGCAAAATGAAATAGATTTTGGAGCATTGTttggagattggagatttggactttggtcc-aaattgcaga-tttggatattgTTCCAACAATCTGG--------------------------------AGctgcttctcctccttcttcttctt i macFas5.chr1 C 0 I 17 s papAnu2.chr1 16706536 620 - 220367699 gttttt----atttcttctggttTGATTTCTACTTACACCTCGAAGA-----TTTTTACCTTCGTAtcttctctgtctttccc----tttaCCTGTGACCTGTCTGCCTTGCCTCCCTTATTAAGTGTTAATAATGCTGGGTTACACTTTAACTCACTTTGCCCAGTATTCTAAATCTT-ATCTCTCCAAAGGAAGTGCTAGTGAAATGTCCCACCATTACCTATCTGTGCTCTCTTACAAATGCAGATTAGGAGCCAAACATTCAGTGGAGCCACATAACTG---CTTTTCATATCAAGCCCTGAACAGCAAGTAAAGGGGCAGAATTGTAAGGAGTCAGACTCCCCATCTAGGTCA-CCTGTCAGAGGCCCCTCCTCACGCTGTTGCTGGACACT--GTCACTTCTCTAAGACATT--------------------------TGATGGTGACCAGGCGCTCCACTCGTCCATGTAGTTTCTGGGATGGATTCCTCTCTGGAATATGAGACTGCCCCACAGATTA-AACTGAT---ACAGGAATTTTGCAGCAAAATGAAATAGATTTTGGAGCATTGTTTGGAGATTGGAGATTTGGACTTTGTTCC-AAATTGCAGA-TTTGGAGATTGTTCCAACAATCTGG--------------------------------AGctgcttctcctccttcttcttctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82505958 620 + 85787240 GTTTTT----ATTTCTTCTGGTTTGATTTCTACTTACACCTCAAAGA-----TTTTTACCTTCATATCTTCTCTGTCTTTCCC----TTTACCTGTGACCTCTCTGCCTTGCCTCCCTTATTAAGTGTTAATAATGCTGGGTTACACTTTAACTCACTTTGGCCAGTATTCTAAATCTT-ATCTCTCCAAAGGAAGTGCTAGTGAAATGTCCCACCATTACCTATCTGTGCTCTCTTACAAATGCAGATTAGGAGCCAAACATTCAGTGGAGCCACATAACTG---CTTTTCCTATCAAGCCCTGAACAACGAGTAAAGGGGCAGGATTGTGAGGAGTCAGACTCCCCATCTAGGTCA-CCTGACAGAGGCCCCTCCTCACCCTGTCGCTGGACACT--GTCACTTCTCTAAGACGTT--------------------------TGATGGTGCCCAGGCGCTCCACTCGTCCATGTGGTTTCTGGGATGGATTCCTCTCTGGAATATGAGACTGCCCCACAGATTA-AACTGAT---AAAGGAATTTTGCAGCAAAATGAAATAGATTTTGGAGCATTGTttggagattggagatttggactttgttcc-aaattgcaga-gttggagattgTTCCAACAATCTGG--------------------------------AGctgcttctcctccttcttctcctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14184724 628 - 49578535 -TTTTTAAAAATTTCTTCCGGTTTGATTTCTACTTACACCTCAGAGA-----TTTTTACCCTCCTGTCTTTGC--TCTTTCCG----TCTGCCTGTGACCGCTCTACCTCGCCTCCCGTATTAAGTGTTAATAATTCTGGTTTACTCTTTAACTCATTTTCGGCAGGATTCTACATCTT-CTCTCTCCAGGGGAAGTGCTAATGAAATGTTCTGCCATGCAGTGTCTATGACCTCTTACGAATGCAGAT-AAGAGCCAGGCATTCAGTGGAGCCACAGAGCTGCCTCCTCTCATATCAGTCCCTGAA-AGCAAGGAAAGGGGCATGACTGTGAGGAGCTGGACTCACCATCCTGGTCA-CCTGTCAGAGGCCCCTCCTAACGCTGTCGCTGGACACTGCGTAACTTCTCCAAGACGTTGTGGTGAAGTTATGGTCACCAAGAGGTTATGGTGACCACGCTCTCTGCTATTCCATGTCGTTTCTGGGATGGATTCCTCTCTGGAATATTAGACTGGTTTACAGATTA-GACTGAT---AAAGAAAGTTCGTAGCAAAACGAAATAGATTTTGGAGCATTGTTTAGAGATTGGAGATTTGGACTTAGTTCC-AAGTTGCACA-TTTGAGGATTGTTCCAACAATTTGG--------------------------------AGcc---------------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178772737 630 + 195471971 tttcTT----TTTTCTCCAGGTATTATTCCTTCTCTAACTGCACAGGAACTTTTTTTCCTCCTTTATATTT----TCTTTCCCTGGTTTTATCTTAATACCCCCTGCCTTCCCTTCCTTTGCAAGTGTTAATAAGTCTTGGATGTGTTTTTACTCATTCTGGGA------CTAAATCTT--TTTCACCAAAGAAAGAGCTAATGAAATGTC---CCAATACACATCTGTGATATTTTAGCAATGCAGAT-AAGATCTAGAAACTCAAGGGAGCTACACAAA-G---CTTTTCATGTAAAGTT----AGTGGAGGCAAACGGCCAC-------ACGAGTCACATAAAACATCTTAACCA--TTGTTAGACAGACCTCAGAGCCCTGTAAGGAGGCCCTGAGTAGGTCCTTGGGTATATT--------------------------CTAAGGTGACCAGAGATGCTAGCCCTCTGTGGAGTTCCTGCAATGGATTCCTCCCTGGAATATTAGACT----CATAGAATATAGATGAA---GAGAAAACTTTACAGCAAAATGAATCCAATTTTGGAGCATTG-TTAGAGACT-AACATTTGGGATTTGTTCC-AAACTGTACA-TTTGGAAATCATTCCAGCAGTTTGGAGTCTTTTATATTTTTAATACTGTGGGCCATTAGCTGCtcttcctcttcctcttcctc i mm10.chr1 I 937 I 5 s canFam3.chr7 36341264 599 + 80974532 TTGCTT----ATTTCCGCTGTGTTCACTTCTGTTCCCACCCTGAAGA-----TTCTCACCCCAACCTTTTCGC--TCCTTCCC----TTGACCTCTGACCTCTCTGCCTTAACTCCCTTGTTAAGTATT-ACCATTCTGAGTTATATTTTTACTCTTTTGGGGCAATATTCTAAATCTT-ACCTCACTAAAGAAAGTGCTAATGAGCTGTTCC-CTTCTCTGAATCTTTGAGCTCTTATAAATGCATGT-GAGCTCAGAGCACCTAATGGAGCCACAGAACTG---TCTTTCCTGTAAAGCCC---------ATCAAAGGGACAATACTGTCAGGA---------AACACCTTGGTCAATATGTCTGCCGGGCCTCATGACCCTGTAACTGGACAGTGCATAACTTCTCTAATACATT--------------------------TTA-AGCAACCAGTCTTTATGCTGGCCCATGTTCTATCTGGGATAGGTTCCTTTTTGAAATATTTGGCT----CACAAATTA-GGCTGATGGAAAATAAATTTTGTAGCACAATGAAACAGATTTTGGAGCATTGGTAAAGGTTTAGAGATTTGGATTTTATTCTAAAATCACAGA-GTTAGAGGTTATTCCGGGAATTTAG--------------------------------AATCTCTACCCCCCCCCCCCCACACA i canFam3.chr7 C 0 C 0 a score=2100.000000 s hg38.chr1_KI270759v1_alt 179007 1 + 425601 c s panTro4.chr1 224931392 1 + 228333871 c i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290205 1 - 229942017 c i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179213 1 - 143122389 c i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82506578 1 + 85787240 c i chlSab2.chr25 C 0 C 0 s mm10.chr1 178773372 1 + 195471971 c i mm10.chr1 I 5 C 0 s canFam3.chr7 36341863 1 + 80974532 C i canFam3.chr7 C 0 I 5 e calJac3.chr19 14185352 0 - 49578535 C e rheMac3.chr1 16893267 422 - 229590362 I e papAnu2.chr1 16707156 0 - 220367699 C e macFas5.chr1 223656068 17 - 227556264 I a score=16878.000000 s hg38.chr1_KI270759v1_alt 179008 11 + 425601 tccttcttctt s panTro4.chr1 224931393 11 + 228333871 tccttcttctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290206 11 - 229942017 tccttcttctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179214 8 - 143122389 tccttctt--- i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223656085 9 - 227556264 --cttcttctt i macFas5.chr1 I 17 I 3 s papAnu2.chr1 16707156 8 - 220367699 ---ttcttctt i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82506579 11 + 85787240 tccttcttctt i chlSab2.chr25 C 0 T 5189 s mm10.chr1 178773373 11 + 195471971 ttcctcttcct i mm10.chr1 C 0 C 0 e canFam3.chr7 36341864 5 + 80974532 I e calJac3.chr19 14185352 0 - 49578535 C e rheMac3.chr1 16893267 422 - 229590362 I a score=30180.000000 s hg38.chr1_KI270759v1_alt 179019 27 + 425601 -tcttctttcctcctcctccttctcctc s panTro4.chr1 224931404 27 + 228333871 -ctttcttctttcctcctcctcctcctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290217 27 - 229942017 -ctttcttctttcctcctcctcctcttc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179222 14 - 143122389 --------------tcctcctccttctc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223656097 27 - 227556264 -tcttctttcctcctcctcttcctcttc i macFas5.chr1 I 3 C 0 s papAnu2.chr1 16707165 27 - 220367699 -tccttctccttcttcttctttcttttc i papAnu2.chr1 I 1 C 0 s calJac3.chr19 14185352 23 - 49578535 -----cctttctcctcctccctccctcc i calJac3.chr19 C 0 I 1 s mm10.chr1 178773384 28 + 195471971 cttcctcttcctcttcctcttcctcttc i mm10.chr1 C 0 C 0 e canFam3.chr7 36341864 5 + 80974532 I e rheMac3.chr1 16893267 422 - 229590362 I e chlSab2.chr25 82506590 5189 + 85787240 T a score=3785.000000 s hg38.chr1_KI270759v1_alt 179046 4 + 425601 ttcc s panTro4.chr1 224931431 4 + 228333871 ttcc i panTro4.chr1 C 0 C 0 s macFas5.chr1 223656124 4 - 227556264 ttcc i macFas5.chr1 C 0 I 1264 s papAnu2.chr1 16707192 4 - 220367699 ttcc i papAnu2.chr1 C 0 I 3 s chlSab2.chr25 82501401 4 + 85787240 ttct i chlSab2.chr25 T 5189 C 0 s calJac3.chr19 14185376 3 - 49578535 ttc- i calJac3.chr19 I 1 C 0 s mm10.chr1 178773412 4 + 195471971 ttct i mm10.chr1 C 0 C 0 e canFam3.chr7 36341864 5 + 80974532 I e rheMac3.chr1 16893267 422 - 229590362 I e nomLeu3.chr5 140179236 0 - 143122389 C e ponAbe2.chr1 226290244 0 - 229942017 C a score=22399.000000 s hg38.chr1_KI270759v1_alt 179050 11 + 425601 tcttcttcttc s panTro4.chr1 224931435 11 + 228333871 tgttcttcttc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290244 9 - 229942017 --ctcttcttc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179236 9 - 143122389 --ttcctcttc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223657392 11 - 227556264 tcttcttcttc i macFas5.chr1 I 1264 C 0 s papAnu2.chr1 16707199 11 - 220367699 tcttcctcttc i papAnu2.chr1 I 3 I 550 s chlSab2.chr25 82501405 11 + 85787240 tcttcttcttc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178773416 11 + 195471971 tcttcttcttc i mm10.chr1 C 0 C 0 e canFam3.chr7 36341864 5 + 80974532 I e calJac3.chr19 14185379 0 - 49578535 C e rheMac3.chr1 16893267 422 - 229590362 I a score=27026.000000 s hg38.chr1_KI270759v1_alt 179061 28 + 425601 ttcttcttcatattattat-tattatta-t s panTro4.chr1 224931446 28 + 228333871 ttcttcttcatattattat-tattcttc-t i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290253 28 - 229942017 ttcttcttcAtattattat-tattatta-t i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179245 28 - 143122389 ttcttcttcatattcttct-tcttcttc-t i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223657403 28 - 227556264 ttcttcttcttcttcttctcttttcttc-- i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16707760 19 - 220367699 ---------ttcttcttctcttttcttc-- i papAnu2.chr1 I 550 I 1 s chlSab2.chr25 82501416 28 + 85787240 ttcttcttcttcttcttct-tcttcttct- i chlSab2.chr25 C 0 C 0 s mm10.chr1 178773427 28 + 195471971 ttcttcttcttcttcttct-tcttcttc-t i mm10.chr1 C 0 C 0 e canFam3.chr7 36341864 5 + 80974532 I e calJac3.chr19 14185379 0 - 49578535 C e rheMac3.chr1 16893267 422 - 229590362 I a score=32750.000000 s hg38.chr1_KI270759v1_alt 179089 20 + 425601 tattattattcttttaattc s panTro4.chr1 224931474 14 + 228333871 tctt------cttttaattc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290281 14 - 229942017 tatt------CTTTTAATTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179273 14 - 143122389 tctt------cttttagttc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16893689 20 - 229590362 TATTATTATTCTTTTAATTC i rheMac3.chr1 I 422 C 0 s macFas5.chr1 223657432 20 - 227556264 tattattattcttttaattc i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16707780 20 - 220367699 tattattattcttttaattc i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82501444 20 + 85787240 tattcttattcttttaattc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178773455 20 + 195471971 tcttcttcttcttcttcttc i mm10.chr1 C 0 C 0 e canFam3.chr7 36341864 5 + 80974532 I e calJac3.chr19 14185379 0 - 49578535 C a score=12690.000000 s hg38.chr1_KI270759v1_alt 179109 3 + 425601 ttc s panTro4.chr1 224931488 3 + 228333871 ttc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290295 3 - 229942017 TTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179287 3 - 143122389 ttc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16893709 3 - 229590362 TTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223657452 3 - 227556264 ttc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16707800 3 - 220367699 ttc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82501464 3 + 85787240 ttc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178773475 3 + 195471971 ttc i mm10.chr1 C 0 I 109 s canFam3.chr7 36341869 3 + 80974532 TTC i canFam3.chr7 I 5 C 0 e calJac3.chr19 14185379 0 - 49578535 C a score=722619.000000 s hg38.chr1_KI270759v1_alt 179112 220 + 425601 AAAGGAGAAGCTCCCAAGAGAGTCGATTTGTGTGAGAGGGCCT-GTGACTGGGCCCCTGAGAGTTGCTTTTTTTTG-AATTAACTGGGATAACAAAAGACAAGCAGGCATCTTGGTATTTTAAGTGTGTTttcccaatggaaat--agaaataaacacaacactgaccaagtat---tcaacagagggatggctaaacaaactgtggggtatacatggaatagaata s panTro4.chr1 224931491 221 + 228333871 AAAGGAGAAGCTCCCAAGCGAGTCGATTTGTGTGAGAGGGCCT-GTGACTGGGCCCCTGAGAGTTGCTTTTTTTTTTAATTAACTGGGATAACAAAAGACAAGCAGGCATCTTGGTATTTTAAGTGTGTTttcccaatggaaat--agaaataaacacaacactgaccaagtat---tcaacagagggatggctaaacaaactgtggggtatacatggaatagaata i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290298 219 - 229942017 AAAGGAGAAGCTCCCAAGAGAGTTGATTTGTGTGAGAGGGCCT-GTGACTGGGCCCCTGAGAGTTGCTTTTCTTTG-AATTAACTGGGATAACAAAAGACAAGCAGGCATCTTGGTATTTTAAGTGTG-TTTCCCGATGGAAAT--AGAAATAAACACAACACTGAccgagtat---tcaacagaggtatggctaaacaaactgtggggtatacacagaatagaata i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179290 220 - 143122389 AAAGGAGAAGCTCCCAAGAGAGTTGATTTTTGTGAGAGGGTCT-GTGACTGGGCCCCTGAGAGTTGCTTTTCTTTG-AATTAACTGGGATAACAAAAGACAAGCAGGCATCTTGGTATTTTAAGTGTGTTTTCCCGATGGAAAT--AGAAATAAACACAACACTGAccaagtat---tcaacagagggatggctaaacaaactgtggggtatacatggaatagaata i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16893712 221 - 229590362 AAAGGAGAAGCTCCCAAGAGAGATGATTTGTGTGAGAGGGCCTGGTGACTGGGCCCCTGAGAGTTGCTTTTCTTTG-AATTAAGTGGAATAACAAAAGTCAAGCAGGCATCTTGGTATTTTAAGTGTGTTTTCCCAAGGGAaat--agaaataaacacaacaccaaccaagtat---tcaacagagggatgggtaaacaatctgtggggtagacatggaatagaata i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223657455 221 - 227556264 AAAGGAGAAGCTCCCAAGAGAGATGATTTGTGTGAGAGGGCCTGGTGACTGGGCCCCTGAGAGTTGCTTTTCTTTG-AATTAAGTGGAATAACAAAAGTCAAGCAGGCATCTTGGTATTTTAAGTGTGTTTTCCCAAGGGAaat--agaaataaacacaacaccaaccaagtat---tcaacagagggatgggtaaacaatctgtggggtagacatggaatagaata i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16707803 219 - 220367699 AAAGGAGAAGCTCCCAAGAGAGATGATTTGTGTGAGAGGGCCTGGTGACTGGGCCCCTGAGAATTGCTTTTCTTTG-AATTAAGTGGAATAACAAAAGTCAAGCAGGCATCTTggtattttaa--gtgttttcccgagggaaat--agaaataaacacaaCACCGACCAAGTAT---TCAACAGAGGGATGGGTAAACAATCTGTGGGGTAGACATggaatagaata i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82501467 221 + 85787240 AAAGGAGAAGCTCCCAAGAGAGACGATTTGTGTGAGAGGGCCTGGTGACTGGGCCCCTGAGAGTTGCTTTTCTTTG-AATTAAGTGGAATAACAAAAGTCAAGCAGGCATCTTGGTATTTTAAGTGTGTTTTCCCGAGGGAaat--agaaataaacacaacaccgaccaagtat---tcaacagaggggtgggtaaacaatctgtggggtagacatggaatagaata i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14185379 210 - 49578535 ----------ctcccAAGACAGTTGATTTGTGTGAGAGGGCCT-GTGACTAGGGCCCTGAGAGTTGCTTTTCTTTG-AATTAAGTGGGATAACAAAAGACAAGCGAGCATCTTGGTATTTTAAGTGTGTTTCCCTAATGGAAAT--AGAAATAAACACAACACTGAccaagtat---tcaatagagggatgggtaaacaagatccggggtccacatagaatagaata i calJac3.chr19 C 0 C 0 s canFam3.chr7 36341872 221 + 80974532 AAAGGAGAAGCTTTTAATAAAGTAAATGTGTGTGAAAAGGCCTAGTGATTGGGGGCCTG-GAGTTGCTTTTC--TG-AGTTAAGTGAGATGACAAAAGACAAGCAGATCCCTTGGTA-TTTAAGTCTGTTTTCCCAGTGGATATTAAGAAATAAAAACATTG-TGGTcacgtatccctcaacagtagaatggatgaacaaaatgtggcatgcctgtacaatggagca i canFam3.chr7 C 0 C 0 e mm10.chr1 178773478 109 + 195471971 I a score=46190.000000 s hg38.chr1_KI270759v1_alt 179332 15 + 425601 ttattcagcaatgaa s panTro4.chr1 224931712 15 + 228333871 ttattcagcaatgaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290517 15 - 229942017 ttattcagcaatgaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179510 15 - 143122389 gtattcagcaatgaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16893933 15 - 229590362 ttattcagcaatgaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223657676 15 - 227556264 ttattcagcaatgaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16708022 15 - 220367699 ttattcagcaatgaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82501688 15 + 85787240 ttattcagcagtgaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14185589 15 - 49578535 tttttcagtggttaa i calJac3.chr19 C 0 C 0 s mm10.chr1 178773587 14 + 195471971 ctatttagccac-ag i mm10.chr1 I 109 C 0 s canFam3.chr7 36342093 15 + 80974532 tgatttacccataaa i canFam3.chr7 C 0 I 222 a score=1114051.000000 s hg38.chr1_KI270759v1_alt 179347 333 + 425601 aaaggaatgtcattctgacacatgctacaacatggatgaaccttgaagacattctacta------agaagccaggcacaaaaaggccaataatatataa-atccacttaaataggggacctagaataggcaaattcatgcagacagaa------atagtgattaccaggggatgtggggagggagaatgggtagttaatatttaatgggt-acagagcttcagtttgggat-atgaaaaagttgtggaacttgatagtggtgatggttgcaagacattgtgaatgcacttaatgccactgaattatacacttaaagatggttaaaatggtaagttttatgctatatTC s panTro4.chr1 224931727 333 + 228333871 aaaggaatgccattctgacacatgctacaacatggatgaaccttgaagacattctacta------agaagccaggcacaaaaaggccaataatatataa-atccacttaaataggggacctagaataggcaaattcatgcagacagaa------atagtgattaccaggggatgtggggagggagaatgggtagttaatatttaatgggt-acagagtttcagtttgggat-atgaaaaagttgtggaacttgatagtggtgatggttgcaagacattgtgaatgcacttaatgccactgaattatacacttaaagatggttaaaatggtaagttttatgctatatTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290532 339 - 229942017 aaaggaatgtcattctgacacatgctacaacatggatgaaccttgaagacattctactaagtgagagaagccagacacaaaaaggccaataatatataa-atctatttaaataggggacctagaataggcaaattcacgcagacagac------atagtgattaccaggggatgtgaggagggagaatgggtagttaatatttaatgggt-acagagtttcagtttgggatggtgaaaaagttgtggaacttgatagtggtga-ggttgcaagacattgtgaatgcacttaatgccactgaattgtacacttaaacatggttaaaatggtgaattttatgctatattc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179525 340 - 143122389 aaaggaatgtcattctgacacatgctacaacgtggatgaaccttgaagacattctactaagtgaaagaagccaggcacaaaaaggccaataatatataa-atccacttaaataggggacctagaataggcaaattcacgcagacagaa------atagtgattaccaggggatgtggggagggggaatgggtagttaatatttaatggat-acagagtttcagtttgggatgatgaaaaagttatggaacttgatactggtgatggttgcaagacactgcgaatgcacttaatgccactgaattgtacacttaaagatggttaaaatggtaaattttatgctatattc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16893948 337 - 229590362 aaaggaatgccattctgacacaagctacaacgtggatgaaccttgaagaccttctactaagtgaaagaagccaggcac-aaaaggccaataatatataa-atccacttaaataggggacctagaataggcaaattcacactgacagaa------gtagtgatta-caggggatgaggggagggagaacgggtagttcatatttaatgggt-gcagagtttcagtttgggatgatg-aaaagttttggaacttgatagtgatgatggttgcatgacgttgtgaatgcacttaatgccactgaattgtacacttaaagatggttaaaatggtaaattgtaaactatattg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223657691 337 - 227556264 aaaggaatgccattctgacacaagctacaacgtggatgaaccttgaagaccttctactaagtgaaagaagccaggcac-aaaaggccaataatatataa-atccacttaaataggggacctagaataggcaaattcacaccgacagaa------gtagtgatta-caggggatgtggggagggagaacgggtagttcatatttaatgggt-gcagagtttcagtttgggatgatg-aaaagttttggaacttgatagtggtgatggttgcatgacgttgtgaatgcacttaatgccactgaattgtacacttaaagatggttaaaatggtaaattgtaaactatatTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16708037 337 - 220367699 aaaggaatgccattctgacacatactacaacgtgggtgaaccttgaagaccttctactaagtgaaagaagccaggcac-aaaaggccaATAATATATAA-ATCCACTTAAATAGGggacctagaataggcaaattcacacCGACAGAA------GTCGTGATTA-CAGGGGATGTGGGGAGGGAGAACAGGTAGTTCATatttaatgggt-gcagagtttcagtttgggatgatg-aaaagttTTGGAActtgatagtggtgatggttgcatgacgttgtgaatgcacttaatgccactgaattgtacacttaaagatggttaaaatggtaaattgtaAACTATATTg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82501703 335 + 85787240 aaaggaatgccattctgacgc--gttacaacgtagatgaaccttgaagaccttctactaagtgaaagaagccaggcac-aaaaggccactaatatataa-atccacttaaataggggacctagaataggcaaattcacaccgacagaa------gtcgcgatga-caggggatgtggggagggagaacgggtagttcatatttaatgggt-gcagagtttcagtttgggatgatg-aaaagttttggaacttgatagtggtgagagttgcatgacattgtgaatgcacttaatgccactgaattgtacacttaaagatggttaaaatggtaaattgtaaactatatTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14185604 339 - 49578535 aaaggaatgccattctgacacatgctgcaacgtggcttaaccttgaagacattctactaagtgaaagaagccaggcacaaaaaggccgatcatacgtaa-atccacttaaataagggagcgagaaca-gcaaattctcacagacagaa------atactgattgccacggggtgcagggagggagaatgggtagttaatatttcataggt-acagagtttcagtttgggatgttggagaggttttggaatttgatagtggtgatggttgcatgacattgtgaatgcacttaatgctactaaactgtggacttaaagatggttacagtggtaaattttatgctatgtta i calJac3.chr19 C 0 C 0 s mm10.chr1 178773601 327 + 195471971 aaaggagggaagttcttacacatgctctctcatggatgaacctgggagacatgatgat--------gaaggcaggtat-aagagaacaa------acat-agctgcttatatgaggtacccaggttaggcaag-ccatagatacagaaagcagcatggtgacctccagaggttggaggtagagagaatggggagttagtattttctgagtaacagagttggagcttggaatactg-tgaaggtttggaactttacattggtaaatgttgaataatattgtgtctacatctaataccattgagtcttatacttaaa-aTAGCC--CATGGCAAAGGGCCTGGTGCATAT i mm10.chr1 C 0 I 262 s canFam3.chr7 36342330 328 + 80974532 aaaggaaggaaatcttgacacatgccccaacttggatgagccttgaagccac-atgttaagtgaaatgagccatccac-aaaacaacaa--atgtgtgatttctacttctaagatgcacctagaatgggcaaattgatgaagataggaagtagaatggcgcttatctagg--tgggggaggggaggacagggatttagtgcttcctgggt-gcagagtttcagtgtgggaagatgaaaaagttctgg-------------cgatgactgcgccacatgacagatgtgcttaaagccaccaaaatgtatacataaaaagggttaaaatggcaagttttatacaatattt i canFam3.chr7 I 222 I 14 a score=32752.000000 s hg38.chr1_KI270759v1_alt 179680 25 + 425601 CTAGCATCA------ttttttttttt--t------------------tttt- s panTro4.chr1 224932060 27 + 228333871 CTAGCATCA------tttttttttttgtt------------------tttt- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290871 20 - 229942017 ctatcataa------tttttt-------t------------------tttt- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179865 23 - 143122389 ctatcataa------ttttttttt----t------------------tttt- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16894285 25 - 229590362 ccatcataa------ttttttttttt--t------------------tttt- i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223658028 23 - 227556264 CCATCATAA--------ttttttttt--t------------------tttt- i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16708374 31 - 220367699 ccatcataattttttttttttttttt--t------------------tttt- i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82502038 25 + 85787240 CCATCATTA------ttttttttttt--t------------------tttt- i chlSab2.chr25 C 0 I 4742 s calJac3.chr19 14185943 22 - 49578535 ctgccataa------atttttttttt--t------------------t---- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36342672 44 + 80974532 caaaaataa------TTATTTTACTT--TCCGTAattaattaatttatttta i canFam3.chr7 I 14 C 0 e mm10.chr1 178773928 262 + 195471971 I a score=35397.000000 s hg38.chr1_KI270759v1_alt 179705 12 + 425601 gagacaaagttt s panTro4.chr1 224932087 12 + 228333871 gagacaaagttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290891 12 - 229942017 gagacaaagttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179888 12 - 143122389 gagacaaagttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16894311 12 - 229590362 gagacaaagttt i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223658052 12 - 227556264 gagacagagttt i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16708406 12 - 220367699 gagacaaagttt i papAnu2.chr1 I 1 C 0 s calJac3.chr19 14185965 12 - 49578535 gagacaaagttt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36342716 12 + 80974532 gagagagagtat i canFam3.chr7 C 0 I 62 e mm10.chr1 178773928 262 + 195471971 I e chlSab2.chr25 82502063 4742 + 85787240 I a score=372719.000000 s hg38.chr1_KI270759v1_alt 179717 152 + 425601 cgctctgtcacccaggctggagtgcaatggcgtgatctcggctcactgcaacctccacctcccaggctcatgtgattctcctgccccagcctcccaagtacctgggattacaggcgcctgccaccactcctggctaacttttgtatttttag s panTro4.chr1 224932099 152 + 228333871 cgctctgtcacccaggctggagtgcaatggcgtgatcttggctcactgcaacctccacctcccaggctcatgtgattctcctgccccagcctcccaagtacctgggattacaggcgcctgccaccactcctggctaacttttgaatttttag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226290903 152 - 229942017 cgctctgtcacccaggctggagtgcaatggtgtgatcttggctcactgcaacctccacctcccaggttcatgtgattctcctgccccagcctcccaagtacctgggattacaggcgcctgccaccactcctggctaacttttgtgtttttag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140179900 152 - 143122389 cgctctgtcacccaggctggagtgcaatggcttgatcttggctcactgcaacctccacctcccaggctcatgtgattctcctgccccagcctcccaagtacctgggattacaggcgcctgccaccactcctggctaacttttgtatttttag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16894323 152 - 229590362 cgctctgccgcccaggctggagtgcaatggcgtgatctcggctcactgcaacctccacctcccaggctcatgtgattctcctgccccagcctcccaaggacctgggattacaggcgcccgccaccactgccggctaacttttgtatttttag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223658064 152 - 227556264 cgctctgtcgcccaggctggagtgcaatggcgtgatctcggctcactgcaacctccacctcccaggctcatgtgattctcctgccccagcctcccaaggacctgggattacaggcgcccgccaccactgccggctaacttttgtatttttag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16708418 152 - 220367699 cgctctgttgcccaggctggagtgcaatggcgtgatctcggctcactgcaacctccacctcccaggctcatgtgattctcctgccccagcctcccaaggacctgggattacaggcacccgccaccactgctggctaacttttgtatttttag i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14185977 152 - 49578535 ccctctgtcacccaggttggagtgcagtggtgcgatctcggctcactgtaacatccacctcccaggctcacgtgattctcctgcctcagcctcccaagtagctgggattacaggtgcccaccaccacacctggctaacttttgtgtttttag i calJac3.chr19 C 0 C 0 e mm10.chr1 178773928 262 + 195471971 I e canFam3.chr7 36342728 62 + 80974532 I e chlSab2.chr25 82502063 4742 + 85787240 I a score=100409.000000 s hg38.chr1_KI270759v1_alt 179869 40 + 425601 tagagacggggtttcgccatgttggccaggctggtctcag s panTro4.chr1 224932251 40 + 228333871 tagagacggggtttcgccatgttggccaggctggtctcag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226291055 40 - 229942017 tagagacggggttttgccatgttggccaggctggtctcag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140180052 40 - 143122389 tagagacggggttttaccatgttggccaggctggtctcag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16894475 40 - 229590362 tagagatggggtttcgccatgttggccaggttggtctcag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223658216 40 - 227556264 tagagacggggtttcgccatgttggccaggttggtctcag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16708570 40 - 220367699 tagagacggggtttcgccatgttggccaggctggtctcag i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14186129 40 - 49578535 tagagaaggggtttcaccatgttggccaggctggtcttga i calJac3.chr19 C 0 C 0 s canFam3.chr7 36342790 23 + 80974532 tggacacaggggctca-----------------gtctcag i canFam3.chr7 I 62 C 0 e mm10.chr1 178773928 262 + 195471971 I e chlSab2.chr25 82502063 4742 + 85787240 I a score=254964.000000 s hg38.chr1_KI270759v1_alt 179909 90 + 425601 actcctgacctcaagtgatctgcccgcctcggcc---tcccagagtgctgggattacaggcgtgagccaccgtgcctggcc--TTCAAAAGTTT-T- s panTro4.chr1 224932291 90 + 228333871 actcctgacctcaagtgatctgcccgcctcggcc---tcccagagtgctgggattacaggcgtgagccaccgtgcctggcc--TTAAAAAGTTT-T- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226291095 90 - 229942017 actcctgacctcaagtgatctgcccgcctcggcc---tcccagagtgctgggattacaggcgtgagccaccgtgcctggcc--TTAAAAATGTT-T- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140180092 90 - 143122389 actcctgacctcaagtgatctgcccgcctcggcc---tcccagagtgctgggattacaggtgtgagccaccgtgcctggcc--TTAAAAATTTT-T- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16894515 89 - 229590362 actcctgacctcaagtgatcctcccgcctcggcc---tcccagagtgctgggattacaggcatgagcca-cgcgcctggcc--ttaaaactttt-t- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223658256 89 - 227556264 actcctgacctcaagtgatccgcccgcctcggcc---tcccagagtgctgggattacaggcatgagcca-cgcgcctggcc--TTAAAACTTTT-T- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16708610 89 - 220367699 actcctgacctcaagtgatccgcccacctcggcc---tcccagagtgctgggattacaggcgtgagcca-cgcgcctggcc--ttaaaactttt-t- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82506805 90 + 85787240 actcctgacctcaagtgatccgcccgcctcggcc---tccgagagtcctgggattacaggcgtgagccaccatgcctggcc--TTAAAACTTTT-T- i chlSab2.chr25 I 4742 C 0 s calJac3.chr19 14186169 90 - 49578535 -accctgatctcaagtgatccgtccacctcagcc---tcccaaagtgctgggattacaggtgtgagccactgtgcttggcc--TTAAAAATTTTCT- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36342813 86 + 80974532 gatcctgagatca----------caacctgagccaaaatcaagagtcggatgcttaactgactgaaccacccaggctccccAATAAAAAATTAT-TG i canFam3.chr7 C 0 C 0 e mm10.chr1 178773928 262 + 195471971 I a score=113604.000000 s hg38.chr1_KI270759v1_alt 179999 33 + 425601 TAAATGCTGC--ATGTG---------AAGGTAACCTTAGGAGAA s panTro4.chr1 224932381 33 + 228333871 TAAATGCTGC--ATGTG---------AAGGTAACCTTAGGAGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226291185 33 - 229942017 TAAATGCTGC--ATTTG---------AAGGTAACCCTAGGAGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140180182 33 - 143122389 TAAATGCTGC--ATGTG---------AAGGTAACCTTAGGAGAA i nomLeu3.chr5 C 0 I 317 s rheMac3.chr1 16894604 33 - 229590362 aaaaTGTTGC--ATGTG---------AAGGCAACCTTAGGAGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223658345 33 - 227556264 AAAATGTTGC--ATGTG---------AAGGTAACCTTAGGAGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16708699 33 - 220367699 aaaatgttgc--atgtG---------AAGGTAACCTTAGGAGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82506895 33 + 85787240 AAAATGTTGC--ATGTG---------AAGGTAACCTTAGGAGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14186259 42 - 49578535 TTAATGTTGC--ATGTGAATGTTTTAAATGTAACCTTAGGAGAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178774190 32 + 195471971 TGGATGCTCC--ACACA---------CAGG-ACTCTGAGGAGAA i mm10.chr1 I 262 C 0 s canFam3.chr7 36342899 35 + 80974532 TAAAAACTGCTAGTGTG---------AAGGTAGCCTTAGGAGAA i canFam3.chr7 C 0 C 0 a score=2575737.000000 s hg38.chr1_KI270759v1_alt 180032 711 + 425601 AACTCTTCTGCTTCTTATAAACTGGCGATGCTGTGTAGCCGTTTTCTGTGATCCCAGAGCCTGCAGGGCAAGGCTTTCAGAGGGCACACGGT-GCCCTTTCACACGAGTGATGCTGACATTTTCTCCAGAGCTGTGATG----AATAAATAAATGAAGGAAGGAGTTAAGATTCCTTACTACTTTGCATCTTGGTCAATAGTCAGTTTGTCTTCTGGTTAAATATGAGTATTTTTCGTGGTGGCAACCCCGTCCTCCAGCTGCTATTCTTACATATACTGGCATTTACTTAAGTGAGCCCTCTTTTCAAACAGGACCTGACCTTTCCTAAAGGAGCTTTAAAGAAATCCATATTTCCTGATTACAAATAGAAAACAGTGTGCTTT-CTCAAGGGTTAATGTGGGCAAAGCAAAGCAATGTTGGTTCTAATTTAAGCACATAGTCTTT-AGGCTTCTTTCGTA-------ATA-GTTCCCTTTTGT---------CCATTTGGGCTGAAACTGCTTCAGTAAGCATTTTATGAAATCAGTGAGAAACTCCAGAAAAAGGCTTCTGCCTCTTT-TTACGAGGGTCGTATTTGGAGCAAAGGAGGGAAGAAAAGCATCTGTCAATTTGATAAATCATTTTCAGGAAAGAAGAAGTTTCAGCAAAGTATAAGATAGAGTTGGCAATTTAAGGGA-GGAAAA-AAAAAAGAGAGGAGACCATCACATATAGTGCTATATAAAT s panTro4.chr1 224932414 711 + 228333871 AACTCTTCTGCTTCTTATAAACTGGCGATGCTGTGTAGCCGTTTTCTGTGATCCCAGAGCCTGCAGGGCAAGGCTTTCAGAGGGCACGTGGT-GCCCTTTCACACGAGTGATGCTGACATTTTCTCCAGAGCTGTGAGG----AATAAATAAATGAAGGAAGGAGTTAAGATTCCTTACTACTTTGCATCTTGGTCAATAGTCAGTTTGTCTTCTGGTTAAATATGAGTATTTTTCTTGGTGGCAACCCCTTCCTC-AGCTGCTATTCTTACATATACTGGCATTTACTTAAGTGAGCCCTCTTTTCAAACAGGACCTGACCTTTCCTAAAGGAGCTTTAAAGAAATCCATATTTCCTGATTACAAATAGAAAACAGTATGCTTT-CTCAAGGGTTAATGTGGGCAAAGCAAAGCAATGTTGGTTCTAATTTAAGGACATAGTCTTT-AGGCTTCTTTCGTA-------ATC-GTTCCCTTTTGT---------CCATTTGGGCTGAAACTGCTTCAGTAAGCATTTTATGAAATCAGTGAGAAATTCCAGAAAAAGGCTTCTGCCTCTTT-TTATGAGGGTCGTATTTGGAGCAAAGGAGGGAAGAAAAGCATCTGTCAATTTGATAAATCATTTTCAGGAAAGAAGAAGTTTCAGCAAAGTATAAGATAGAGTTGGCAATTCAAGGGA-GGAAAAGAAAAAAGAGAGGAGACCATCACATACAGTGCTCTATAAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226291218 712 - 229942017 AACTCTTCCGCTTCTTATAAACTGGTGATGCTGTGTAACTGTTTTCTGTGATCCCAGAGCCTGCAGGGCAAGGCTTTCAGAGGGCACA-GGT-GCCCTTTCACACAAGTGATACTGACATTTTCTCCAGAGCTGTGATG----AATAAATAAATGAAGAAAGGAGTTAAGATTCCTTACTACTTTGCATCTTGGTCAATAGTCAGTCTGTCTTCTGGTTAAATATGAGTATTTTTCTTGGTGGCAACCCCTTCCTCCAGCTGCTATTCTTACATATACTGGCATTTACTTAAGTGAGCCCTTGTTTCAAACAGGACTTGACCTTTCCTAAAGGAGCTTTAAAGAAATCCATATTTCCTGATTACAAATAGAAAACAGTATGCTTG-CTCAAGGGTTAATGTGGGCAAAGCAAAGCAATGTTGGTTCTAATTTAAGCACGTAGTTTTTAAGGCTTCTTTCGTT-------ATA-GTTCCCTTTTGT---------CCATTTGGGCTGAAACTGCTTCAGTAAGCATTTTATAAAATCAGTGAGAAACTCCAGAAAAAGGCTTCTGCCTCTTT-TTATGAGGGTCGTATTTGGAGCAAAGGAGGGAGGAAAAGCATCTGTCAATTTGATAAATCATTTTCGGGAAAGAAGAAGTTTCAGCAATGTATAAGATAGAGTTGGCAATTCAAGGGA-GGAAAAAAAAAAAGAGAGAAGACCATCACATATAGTGCTATATAAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140180532 708 - 143122389 AACTCTTCCACTTCTTATAAGCTGGCAATGCTGTGTAGCTGTTTTCTGTGATCCCAGAGCCTGCAGGGCAAGGCTTTCAGATGGCACACGGT-GCCCTTTCACATGAGTGATGCTGACATTTTCTCCAGAGCTGTGatg----aataaatgaatgaaggaaggaGTTAAGATTCCTTACTACTTTGCATCTTGGTCAATAGTC----TGTCTTCTGGTTAAATATGAGTATTTTTCTTGGTGGCAACCCCTTCCTCCAGCTGCTATTCTTACATACACTGGCATTTACGTAAGTGAGCCCTCTTTTCAAACAGGACCTGACCTTTCCTAAAGGAGCTTTAAAGAAATCCATATTTCCTGATCACAAATAGAAAACAGTATGCTTTACTCAAGGGTTAATGTGGGCAAAGCGAAGCAATGTTGGTTCTAATTCAAGCACATAGTCTTT-AAGCTTCTTTCGTA-------ATA-GTTCCCTTTTGT---------CCATTTGGGCTGAAACTGCTTCAGTAAGCATTTTATAAAATCAGTGAGAAGCTCCAGAAAAAGGCTTCTGCCTCTTT-TTATGAGGGTCGTATTTGGAGCAAAGGAGGGAAGAAAAGCATCTGTCAATTTGATAAATCATTTTCAGGAAAGAAGAAGTTTCAGCAAAGTATAAGATAGAGTTGGCAATTCGAGGGA-GGAAAA-AAAAAAGAGAGGAGACCATCACATATAGTGCTATATAAAT i nomLeu3.chr5 I 317 C 0 s rheMac3.chr1 16894637 712 - 229590362 AACGCTTCCACTTCCTATAAACTGGCGATGCTGTGTAGCCATTTCCTGTGATCCCAGAGCCTGCAGGGCAAGGCTTTCAGATAGCACACGGT-GCCCTTTCACATGAGTGATGCTGACATTTTCTCCAGAGCTGTGATG----AATGAATAAACGAAGGAAGGAGTTACGATTCCTGACTACTTTGCATCTTGGTCAATAGTCAGTCTGTCTTCGGGTTAAATATGAGTGTTTTTCTTGGTGGCAACCCCTTCCTCTAGCTGCTATTCTTGCAGATACTGGCATTTACTTAAGTGAGCCCTCTTTTCAAACAGGACCTGACCTTTCCTAAAGGAGCTTTAAAGAAATCCATATTTCCTGATTACAAATAGAAAACAGTATGCTTT-CTCAAGGGTTAATGTGGGCAAAGCAAAGCAATGTTGGTTCTAATTTAAGTACAGAGTCTTTAAGGCTTCTTTTGTA-------ATA-TTTCCCTTTTGT---------CCATCCGGGCTGAAACTGCTTCAGTAAGCATTTTATAAAATCGGTGAGAAATTCCAGAAAAAGGCTTCTGCCTCTTT-TTATGAGGGTCATATTTGGAGCAAAGGAGGGAAGAAAAGCATCTGTCAATTTGATAAATCATTTTCAGGAAAGAAGAAGTTTCAGCAAAGTGTAAGACGGAGTTGGCAATTCAAGGGA-GAAAAA-AAAAAGAAGAGGAGACCATCACATATAGTGCTATATAAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223658378 713 - 227556264 AACGCTTCCACTTCCTATAAACTGGCGATGCTGTGTAGCCATTTCCTGTGATCCCAGAGCCTGCAGGGCAAGGCTTTCAGATAGCACACGGT-GCCCTTTCACATGAGTGATGCTGACATTTTCTCCAGAGCTGTGATG----AATGAATAAACGAAGGAAGGAGTTACGATTCCTGACTACTTTGCATCTTGGTCAATAGTCAGTCTGTCTTCGGGTTAAATATGAGTGTTTTTCTTGGTGGCAACCCCTTCCTCTAGCTGCTATTCCTGCAGATACTGGCATTTACTTAAGTGAGCCCTCTTTTCAAACAGGACCTGACCTTTCCTAAAGGAGCTTTAAAGAAATCCATATTTCCTGATTACAAATAGAAAACAGTATGCTTT-CTCAAGGGTTAATGTGGGCAAAGCAAAGCAATGTTGGTTCTAATTTAAGTACAGAGTCTTTAAGGCTTCTTTTGTA-------ATA-TTTCCCTTTTGT---------CCATCCGGGCTGAAACTGCTTCAGTAAGCATTTTATAAAATCGGTGAGAAATTCCAGAAAAAGGCTTCTGCCTCTTT-TTATGAGGGTCATATTTGGAGCAAAGGAGGGAAGAAAAGCATCTGTCAATTTGATAAATCATTTTCAGGAAAGAAGAAGTTTCAGCAAAGTGTAAGACGGAGTTGGCAATTCAAGGGAGGGAAAA-AAAAAAAAGAGGAGACCATCACATATAGTGCTATATAAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16708732 712 - 220367699 AACTCTTCCACTTCCTATAAACTGGCGATGCTGTACAGCCATTTCCTGTGATCCCAGAGCCTGCAGGGCAAGGCTTTCAGATGGCACACGGT-GCCCTTTCACATGAGTGATGCTGACATTTTCTCCAGAGCtgtgatg----aatgaataaacgaaGGAAGGAGTTACGATTCCTGACTACTTTGCATCTTGGTCAATAGTCAGTCTGTCTTCGGGTTAAATATGAGTGTTTTTCTTGGTGGCAACCCCTTCCTCTAGCCGCTATTCTTGCAGATACTGGCATTTACTTAAGTGAGCCCTCTTTTCAAACAGGACCTGACCTTTCCTAAAGGAGCTTTAAAGAAATCCATATTTCCTgattacaaatagaaaacagtatgcTTT-CTCAAGGGTTAATGTGGGCAAAGCAAAGCAATGTTGGTTCTAATTTAAGTACAGAGTCTTTAAGGCTTCTTTTGTA-------ATA-TTTCCCTTTTGT---------CCATCTGGGCTGAAACTGCTTCagtaagcattttataaaatcagtGAGAAATTCCAGAAAAAGGCTTCTGCCTCTTT-TTATGAGGGTCATATTTGGAgcaaaggagggaagaaaagcatCTGTCAATTTGATAAATCATTTTCAGGAAAGAAGAAGTTTCAGCAAAGTATAAGACAGAGTTGGCAAttcaaggga-ggaaaa-aaaaaaaagaggagaccaTCACATATAGTGCTATATAAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82506928 698 + 85787240 AACTCTTCCACTTCCTATAAACTGGCGATGCTGTGTAGCCATTTCCTGTGATCCCAGAGCCTGCAGGGCAAGGCTTTCAGATGGCACACGGT-GCCCTTTCACATGAGTGATGCTGACATTTTCTCCAGAGCTGTGATG----AATAAATAAACGAAGGCAGGAGTTACGATTCCTGACTACTTTGCATCTTGGTCAATAGTCAGTCTGTCTTCGGGTTAAATGTGAGTGTTTTTCTTGGTGGCAACCCCTTCCTCTAGCTGCTATTCTTACAGATACTGGCATTTACTTAAGTGAGCCCTCTTTTCAAACAGGACCTGACCTTTCCTAAAGGAGCTTTAAAGAAATCCGTATTTCCTGATTACAAATAGGAAACAGTGTGCTTT-CTCAAGGGTTAATGTGGGCAAAGCAAAGCAGTGTTGGTTCTAATTTAAGTACAGAGTCTTTGAGGCTTCTTTTGTA-------ATA-TTTCCCTTTTGT---------CCATTTGGGCTGAAACTGCTTCAGTAAGCATTTTATAAAATCGGGGAGAAATTCCAGAAAAAGGCTTCTGCCTCTTT-TTATGAGGGTCATATTTGGAGCAAAGGAGGGAAGAAAAGCATCTGTCAATTTGAAAAATCATTTTCAGGAAAGAAGAAGTTTCAGCA------------GAGTTGGCAATTCAAGGGA-GGAAAA-AAAA--AAGAGGAGACCATCACATGTAGTGCTATATAAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14186301 701 - 49578535 AACTCTTTTGCTTCTTATAAACTGGTGATGCTGTGTAGCCGTTTTCTGTGA-ACCAGAACCTGCAGGGCAAGGCTTTCAGAGGCC----CGT-GCCCTTGCACATGCGTGATGCTGACATTTTCTCCAGAGCTGTGACG----AATAAATAAAT-AAGGAAGGAGTTAAGGTTGCTTCCTACTTTGCATCTTGGTCAATAGTCAGTCTGTCTTCCGGTGAAATCTGAGTATTTCTCTTGGTGACCACCCCTTCCTCCAGCTGCTCTTCCTACGTGGACTGGCATTTACATAAATGAGCCCGCTCTTCAGACGGGACCTGGCCTTTCCTAAAGGAGCATTGAAGAAATCCACATTTCCTGATTACAAATAGAAAACAGTATGCTCT-CTCAAGGGTTAATGTGGGCAAAGCGAAGCGGTGTTGGCTCTGGTTTCAGTGCAGACTCTTGACGGCTTCTTTTGTA-------ATC-TTTCCCTTTTGT---------CCGTTTGGGCCGAGACTGCTTCCGAAAGCATCTCATATCACCAGCGAGAAACTGCAGAAGAAGGC-TCTGCCTCCTT-TGACGAGGGCCATATTTGGAGCAAAGGAGGGAAGAAAAGCATCTGTCAATTTGATGAATCATTTTCAGGAAAGAAGGAGTTTCAGCAAAGTATAAGATGGAGTTGGCAATTCAAGGGA-GAAAAG-GAAA----GAGGAGAGCATCACATACAATGCTACGTACAt i calJac3.chr19 C 0 I 606 s mm10.chr1 178774222 682 + 195471971 -----------CATTGAGGGGTTGGAGACCCTGTGTGGCCATATCCTGTCACCACAGATCCT-CAGAACAAGACATCACAGTGATGCCCTCT-GTCCCTTCACATAAGTGGGACTGACATTTGCTCCACAGCTTCGGTG----AACAAATGAAGGAAGAATACAGATGCTGTCCAGCAATGATTTGCATCTCAATTGATAATCGGGCTGGCTGGCTGT--------AACATTCTTCTGCACGGTGGCCTCTCCCTGTAGCCATCATTCTTAAATGTCCTGGCATTTATGAAACCAGA--CTCCTTTAAGACAAGACCTGACCTTTCCCAACGGAGCTTC-AAGCAATCTATAGGTACTGGTTAAAAATAGAAAATGGTGTGCTTT-TTCAGGGGCTAACATAGGCAAAGCAGAGAGAGGGTGGGTGCAG-TCAAGTCTGTCTGTTTGAGGGCTTCTTCTGCA-------ATGCCTTTCCACTTGTTCCTCCCAACCATTCAGGTTCAAACCACATCACTAAACATTTTATGAATTCAGTGAAAACCTCCACAAAAAGGCTCTTGCCTTTTTAAAATGAGGGTCATATTT--------GGAGGAAAGAAAAACATCTATCAATTTAAAAAA--ATTTCTAGGAAATA---ACTTCTGGAAAAGGATTAGATTGAGCAGGCAAGTCCA-----AATGAA-AGGAGGTAGGGGAGAATGTCATATGTGATAACATAGGAAT i mm10.chr1 C 0 C 0 s canFam3.chr7 36342934 673 + 80974532 AACTCTGCAGCTTTTCATAAATTGGTGACCCTGGGGAGCCTGTTCCTGTGATCACAGGTCCTTTGGGGCAACGCTTTAAGATGGGATACTGCAGCCCTTTTACACGAGTGATGTTGACATTTTCTCCTTCGCTGTGACGAGTAAGTAAATAAATGAAGGAAGGCACTGAGATTCCATACTGCATTTCATCTTGATCAATAGTCCTCCTATCTTCTGGTTAAATAGGAGCATTTTTCTTTGTAGCAATCTC--CCCTCAGCTGTTATTCTTAAATATACTGGCATTTACTTA----------------------GACCTGACCTTTTCTAGATGAGGTTTAAAGAAATCCATACACCCTGATTAAAAATAGAAGACTGTACGCTTT-CTCAAGGGTTAATGCAGGCAAAGCAAAGAAATGTCGGTTCTAATTCAAGTATCTATTTTTGAAGGCTCCTTTAACACATTCTTGTT-TTCTCTCTCCAT---------CCACTTGGGCTAACACTGTTTCATTGAGCATTTTTTAAAATCACTGAAAAGTTCCAGAAAAATATTCCTGCCTTGTT-TTAAAAGGGTCATATTTGGAGCCAGAAAAAGAGGAAAAGTATCTGTCAATTTGATAAATTATTTCCAAGGAAGA---AGTTTCTGGAAAGTGTAAGATTGTACAGGTAATTCAAGAAA-CAAAAG-AGTA------------------------TGCTTTAAGAAT i canFam3.chr7 C 0 C 0 a score=112188.000000 s hg38.chr1_KI270759v1_alt 180743 40 + 425601 GGTTTCTATAGAGAGCTTTTAAATATGTAAAATAATTTCA s panTro4.chr1 224933125 40 + 228333871 GGTTTCTATAGAGAGCTTTTAAATATGTAAAATAATTTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226291930 40 - 229942017 AGTTTCTATAGAGAGCTTTTAAATATGTAAAATAATTTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140181240 38 - 143122389 GGTTTCTAT--AGAGCTTTTAAATATGTAAAATAATTTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16895349 40 - 229590362 GGTTTTTATAGAGAGCTTTTAAATGTGTAAAATAATTTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223659091 40 - 227556264 GGTTtttatagagagcttttaaatgtgtaaaataatttca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16709444 40 - 220367699 GGTTTTTATAGAGagcttttaaatgtgtaaaataatttca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82507626 40 + 85787240 GGtttttatagaaagcttttaaatgtgtaaaataatttca i chlSab2.chr25 C 0 C 0 s mm10.chr1 178774904 38 + 195471971 TATTTTCATTTAGAACTTTT--ATACATATAATAATAGTA i mm10.chr1 C 0 C 0 s canFam3.chr7 36343607 40 + 80974532 GGCTTTTATGTAGAATGTACAAATTCATAAAGTAATTCCA i canFam3.chr7 C 0 I 819 e calJac3.chr19 14187002 606 - 49578535 I a score=84954.000000 s hg38.chr1_KI270759v1_alt 180783 33 + 425601 TATATACTATCTCATT-AGTGCTCACGGC-AATCC s panTro4.chr1 224933165 33 + 228333871 TATATACTATCTCATT-AGTGCTCACGGC-AATCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226291970 33 - 229942017 TATATAGTATCTCGTT-AGTGCTCACAGC-AATCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140181278 34 - 143122389 TGCTTAGTATCTCATT-AGTGCTCACAGCGAATCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16895389 33 - 229590362 TATATAGTGTCTCATT-AGTGCTCACAGC-AATCC i rheMac3.chr1 C 0 I 5 s macFas5.chr1 223659131 33 - 227556264 tatatagtgtctcatt-agtgctcacagc-aatcc i macFas5.chr1 C 0 I 5 s papAnu2.chr1 16709484 33 - 220367699 tatatagtGTCTCATT-AGTGCTCACAGC-AATCC i papAnu2.chr1 C 0 I 5 s chlSab2.chr25 82507666 33 + 85787240 tatatagtgtctcatt-agtgctcacagc-aatcc i chlSab2.chr25 C 0 I 5 s mm10.chr1 178774942 34 + 195471971 TACACACCATCTCATTAAATGCTCCCAAC-AACCC i mm10.chr1 C 0 C 0 e canFam3.chr7 36343647 819 + 80974532 I e calJac3.chr19 14187002 606 - 49578535 I a score=13410.000000 s hg38.chr1_KI270759v1_alt 180816 4 + 425601 AGTA s panTro4.chr1 224933198 4 + 228333871 AGTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226292003 4 - 229942017 AGTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140181312 4 - 143122389 AGTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16895427 4 - 229590362 AGTA i rheMac3.chr1 I 5 C 0 s macFas5.chr1 223659169 4 - 227556264 agta i macFas5.chr1 I 5 C 0 s papAnu2.chr1 16709522 4 - 220367699 AGTA i papAnu2.chr1 I 5 C 0 s chlSab2.chr25 82507704 4 + 85787240 agta i chlSab2.chr25 I 5 C 0 s calJac3.chr19 14187608 4 - 49578535 AATG i calJac3.chr19 I 606 C 0 s mm10.chr1 178774976 4 + 195471971 AGCA i mm10.chr1 C 0 I 23 e canFam3.chr7 36343647 819 + 80974532 I a score=465324.000000 s hg38.chr1_KI270759v1_alt 180820 158 + 425601 GTTATtat--agagcttttaaatacgtaagataatttcatacatattatctcatttagtgctcacagcaatccagtaaagtagttattactttatgggtgaagaaatgaaggttcagCtt-----tattttatttcattatttattttaca-ttttttattttaat s panTro4.chr1 224933202 153 + 228333871 GTTATtat--agagcttttaaatacataagataatttcatacatattatctcatttagtgctcacagcaatccagtaaagtagttattactttataggtgatgaaatgaaggttcagCtt-----tattt-----cattatttattttaca-ttttttattttaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226292007 158 - 229942017 GTTATtat--agagcttttaaatacataagataatttcatacatattatctcatttagtgctcacagcaatccagtaaagtagttattactttacaggtgaagaaatgaaggttcagCTT-----TATTTTATTTCATTATTTATTTTACA-ttttttatttttat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140181316 158 - 143122389 GTTATtat--agagcttttaaatacgtaaagtaatttcatgcatattatctcatttagtgctcatagcaatccagtaaagtagttattacttaataggtgaagaaatgaaggttcagCtt-----tattttatttcattatttattttaca-ttttttattttaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16895431 158 - 229590362 GTTATtat--agggcttttaaatgtgtaaaataatttcagacatattatctcatttagtgctcatagccatccagtaaagtagttattactttacaggtgaagaaatgaaggttcagCtt-----tattttatttcattatttattttaca-ttttttattttaat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223659173 158 - 227556264 gttattat--agggcttttaaatgtgtaaaataatttcagacatattatctcatttagtgctcatagccatccagtaaagtagttattactttacaggtgaagaaatgaaggttcagCtt-----tattttatttcattatttattttaca-ttttttattttaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16709526 158 - 220367699 GTTATTAT--AGGgcttttaaatgtgtaaaataatttcatacatattatctcatttagtgcTCATAGCCATCCAGTAAAGTAGTTATTactttacaggtgaagaaatgaaggttcagctt-----tattttatttcattatttattttaca-ttttttattttaat i papAnu2.chr1 C 0 I 308 s chlSab2.chr25 82507708 158 + 85787240 gTTATtat--agggcttttaaatgtgtaaaataatttcatacatattatctcatttagtgttcacagccatccagtaaagtagttattactttacaggtgaagaaatgaaggttcagCtt-----tattttatttcattatttattttaca-ttttttatcttaat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14187612 166 - 49578535 GTTtttatagagagcttttaaatatgtaaaataatttcatacatagtatctcatttagtgctcacagcaatccagtaaagtacttattgttttacaggtgaagaaatgaaggttcagCtttataatattttattttattgtttattttacatttttttagtttaat i calJac3.chr19 C 0 C 0 e mm10.chr1 178774980 23 + 195471971 I e canFam3.chr7 36343647 819 + 80974532 I a score=12380.000000 s hg38.chr1_KI270759v1_alt 180978 6 + 425601 tAAAtt s panTro4.chr1 224933355 6 + 228333871 taaaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226292165 6 - 229942017 taaatt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140181474 6 - 143122389 tAAAAt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16895589 6 - 229590362 tAAAtt i rheMac3.chr1 C 0 I 749 s macFas5.chr1 223659331 6 - 227556264 tAAAtt i macFas5.chr1 C 0 I 19 s papAnu2.chr1 16709992 6 - 220367699 taaaaa i papAnu2.chr1 I 308 C 0 s chlSab2.chr25 82507866 6 + 85787240 tAAAtt i chlSab2.chr25 C 0 I 492 s calJac3.chr19 14187778 6 - 49578535 tAAAAA i calJac3.chr19 C 0 C 0 e mm10.chr1 178774980 23 + 195471971 I e canFam3.chr7 36343647 819 + 80974532 I a score=34199.000000 s hg38.chr1_KI270759v1_alt 180984 13 + 425601 ttttttt-gggacg s panTro4.chr1 224933361 13 + 228333871 ttttttt-gagacg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226292171 14 - 229942017 tttttttcgagaca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140181480 13 - 143122389 ttttttc-gagaca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16896344 13 - 229590362 ttttttt-gagaca i rheMac3.chr1 I 749 C 0 s macFas5.chr1 223659356 13 - 227556264 ttttttt-gagacg i macFas5.chr1 I 19 I 295 s papAnu2.chr1 16709998 13 - 220367699 ttttttt-gagaca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82508364 13 + 85787240 ttttttt-gagaca i chlSab2.chr25 I 492 C 0 s calJac3.chr19 14187784 13 - 49578535 ttttttt-gacaca i calJac3.chr19 C 0 C 0 e mm10.chr1 178774980 23 + 195471971 I e canFam3.chr7 36343647 819 + 80974532 I a score=693058.000000 s hg38.chr1_KI270759v1_alt 180997 236 + 425601 aggtctcgctctgtcacccaggctggagtgtagtagcaacaatcacagctcactgcagcctcggcctcccaggctcaagccatcctctcgcctcagtctcccaagtagctggaaccacaggcacatgccatcatgcctggctaacgtttccactttttgcagagacagggtctcgctgtgttgcccaggctgTGGTTCAGCTTTAATAAGTGGCTTGCTCAAGGCCTCACAGCCTG s panTro4.chr1 224933374 236 + 228333871 aggtctcgctctgtcacccaggctggagtgtagtagcaacaatcacagctcactgcagcctcggcctcccaggctcaagccatcctctcgcctcagtctcccaagtagctgggaccacaggcacatgccatcatgcctggctaacgtttccactttttgcagagacagggtctcgctgtgttgcccaggctgTGGTTCAGCTTTAGtaagtggcttgctcaaggcctcacagcctg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226292185 234 - 229942017 aggtctcgctatgtcacccaggctggagcgtagtggcaacaat--cagctcactgcagcctcggcctcccaggctcaagacatcctctcgcctcagtctcccaagtagctgggaccacaggcacatgccatcatgcctggctaacgtttccactttttgcagagacagagtctcgctgtgttgcccaggctTTGGTTTAGCTTTAATAAGTGGCTTGTTCAAGACCTCACAGCCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140181493 234 - 143122389 aggtctcgctctgtcacccaggctggagtgtagtgacagcaat--cagctcactgcagcctcggcctcccaggctcaagccatcctctcgcctcagtctcccaagtagctgggaccacaggcacgtgacatcacgcctggctaatgtttccactttttgcagagacggggtctcactgtgttgcccaggctgTGGTTCAGCTTGAATAAGTGGCTTGCTCAAGGCCTCACAGCCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16896357 236 - 229590362 aggtctcgctctgtcacccaggctggagtgtagaggcaacaatcacagctcactgcagccttggcctcccaggctcaagcagtccctccgcctcggtctcccaagtcgctgggaccgcaggcacatcccatcatgcctggctaatgtttccactttttgcagagacagggtcttgctgtgtttcccaggctgTGGTTCAGCTTTCATAAGTGGCTTGCTCAAGGCCTCCCAGCCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223659664 236 - 227556264 aggtctcgctctgtcacccaggctggagtgtagaggcaacaatcacagctcactgcagccttggcctcccaggctcaagcagtccctccgcctcggtctcccaagtcgctgggaccgcaggcacatcccatcatgcctggctaatgtttccactttttgcagagacagggtcttgctgtgtttcccaggctgTGGTTCAGCTTTCATAAGTGGCTTGCTCAAGGCCTCCCAGCCTG i macFas5.chr1 I 295 C 0 s papAnu2.chr1 16710011 236 - 220367699 aggtctcgctctgtcacccaggctggagtgtagaggcaacaatcacagctcactgcagccttggcctcccaggctcaagcagtccctccgcctcggtctcccaagtcgctgggaccgcaggcacatgccatcacgcctggctaatgtttccactttttgcagagacagagtcttgctgtgtttcccaggctgtggTTCAGCTTTCATAAGTGGCTTGCTCAAGGCCTCCCAGCCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82508377 236 + 85787240 aggtctcgctctgtcacccaggctggagtgtagagtcaacaatcacagctcactgcagcctcggcctcccaggctcaagtggtccctccgcctcggtctcccaagtcactgggaccacaggcacatgccatcacgcctggctgatgtttccagtttctgcagagacagggtcttgctgtgtttcccaggctgTGGTTCAGCTTTCATAAGTGGCTTGCTCAAGGCCTCCCAGCCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14187797 236 - 49578535 aggtgtcactctgtcacccagtctggagtgtagtggcaacaatcacagctcactgcagcctcgacctcctgggctcaagcaatccctccacctcggcctcccaagtagctgggaccacagatacatgccatcatgcctggctaatttttccaatttttgtagagacaggatcttgctgtgttgccccagctCCAGTCCAGCTTTAGTAAGTGTCTTGCTCCTGGCCTTACAGCCTG i calJac3.chr19 C 0 C 0 e mm10.chr1 178774980 23 + 195471971 I e canFam3.chr7 36343647 819 + 80974532 I a score=1279391.000000 s hg38.chr1_KI270759v1_alt 181233 446 + 425601 TAAAAGAAACTAAACTTTTGCAGAGCTTCCTTCCTGTCCATAGAAC---------TGTCCCAAAGTCGGACGTCCTGGGCCTGAGGCACGGGTTTGTCACAAGGGG-TGGCTCCCAATAGTAAACCTTCATGGCTCCCTGTATGTGTGGAATGAGTCTCTAATTGTGGAGAATTGAGAAT------------GGGGGGGGTGGTTAGAGTCCCTTGAAGTGTTTTGCCAGTGTAGCTTGTGTCGTGATACCTCTTTGTGTCATTGTAAGTATGATCATGCCCACATCTTTCTGACATGGTCTTTTGCATCTGAATTTGCAGTTTCACATTTAACAGATTTAAACAGA-TTGGTGGCCCATATGTATCTAAAAGAGAAACATGTCATCTCcaggaccaactatatcatttg-cagggctcagtgca-----aaatgaaacagagggactctagctcaaaaatgattaaaagtgtca s panTro4.chr1 224933610 446 + 228333871 taagaggAACTAAACTTTTGCAGAGCTTCCTTCCTGTCCACAGAAC---------TGTCCCAAAGTCGGACGTCCTGGGCCTGAGGCATGGGTTTGTCGCAAGGGGCTGGCTCCCGATAGCAAACCTTCACGGCTCCCTGTATGTGTGGAATGAGTCTCTAATTGTGGAGAATTGAGAAT------------GGGGGGG-TGGTTAGAGTCCCTTGAAGTGTTTTGCCAGTGTAGCTTGTGTCGTGATACCTCTTTGTGTCATTGTAAGTATGATCATGCCCACATCTTTCTGACATGGTCTTTTGCATCTGAATTTGCAGTTTCACATTTAACAGATTTAAACAGA-TTGGTGGCCCGTATGTATCTAAAAGACAAACGTGTCATCTCcaggaccaactatatcatttg-cagggctcagtgca-----aaatgaaacagagggactctagctcaaaaatgattaaaagtgtca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226292419 446 - 229942017 TAAGAAGAACTAAACTTTTGCAGAGCTTCCTTCCTGTCCACAGAAC---------TGTCCCAAAGTCAGACGTCCTGGGCCTGAGGGATGGGTTTGTTGCAAGGGGCTGGCTCCCAATAGCAAACCTTCATGGCTCCTTGTATATGTGGAATGAATCTCTAATTGTGGAGAATTGAGAAT------------GGGGGGG-TGGTTAGATTCCTTTGAAGTGTTTTGCCAGTGTAGCTTGTGTCGTGATACCTCTTCGTGTCATTGTAAGTATGATCACGCTCACATCTTTCTGACATGGTCTTTTGCATCTGAATTTGCAGTTTCAAATTTAACAGATTTAAACAGA-TTGGTGTCCCCTATGTATCTAAAAGAGAAACATGTCATCTCcaggaccaactatataatttg-cagggctcagtgca-----aaatgaaacagagggactgtagctcaaaaatgattaaaagtgtca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140181727 440 - 143122389 TGGGAAGAACTAAACTTTTGCAGAGCTTCCT-----TCCACAGAAC---------TGTCCCAAAGTGGGAGATCCTGGGCCTGAGGGATGGGTTTGTTGCAAGGGGCTGGCTCCCGATAGCAAACCTGCCTGGCTCCCTGTATATGTGGAATGAATCTCTAATTGTGGAGAACTGAGAAT------------GGGGGTG-TGGTTAGATTCCCTTGAAGTGTTTTGCCAGTGTAGATTGTGTCGTGATACCTCTCTGTGTCACTGTAAGTATGATCATGCCCACATCTTTGTGACATGGTCTTTTGCATCTGAATTTGCAGTTTCAAATTTAACAGATTTAAATAGA-TTGGTGGCCTGTATGTA-CTAAAAGAGAAACATGTCATCTCcaggaccaactatataatttg-cagggctcagtgca-----aaatgaaacagagggactctagctcaaaaatgattaaaagtgtca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16896593 446 - 229590362 TAGGAAGAACTAAACTTTTGCAGAGCTTCATTCCTGTCCACAGAAC---------TGTCCCAAAGTCAGAGGTCCTGGGCCTGAGGGATGGGTTTGTTGCAAGGGGCTGGCTCCTGATAGCAAACCTTCATGGCTCCCTGTATATGTGGAATGAATCTCTAATTGTGGAGAATTGAGAAT--------GGGGGGGGGCG-TGGTTAGATGCCCTTGACGTGCTGTGCCGGTGTAGCTTGTGTCGTGATACCTCTTTGTGTTGTT----GTGTGATCATGCCCACATCTTTCTGACATGGTCTTTTGCATCTGAATTTGCAGTTTCAAATTTAACAGATTTAAATAGA-TTGGTGGCCCTTATGTATCTAAAAGAGAAACATGTCATCTCcaggaccaactatataatttg-cagggctcagtgca-----aaatgaaacagagggactctagctcaaaaatgattaaaagtgtca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223659900 445 - 227556264 TAGGAAGAACTAAACTTTTGCAGAGCTTCATTCCTGTCCACAGAAC---------TGTCCCAAAGTCAGAGGTCCTGGGCCTGAGGGATGGGTTTGTTGCAAGGGGCTGGCTCCTGATAGCAAACCTTCATGGCTCCCTGTATATGTGGAATGAATCTCTAATTGTGGAGAATTGAGAAT---------GGGGGGGGCG-TGGTTAGATGCCCTTGACGTGCTGTGCCGGTGTAGCTTGTGTCGTGATACCTCTTTGTGTTGTT----GTGTGATCATGCCCACATCTTTCTGACATGGTCTTTTGCATCTGAATTTGCAGTTTCAAATTTAACAGATTTAAATAGA-TTGGTGGCCCTTATGTATCTAAAAGAGAAACATGTCATCTCcaggaccaactatataatttg-cagggctcagtgca-----aactgaaacagagggactctagctcaaaaatgattaaaagtgtca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16710247 457 - 220367699 TAGGAAGAACTAAACTTTTGCAGAGCTTCATTCCTGTCCACAGAAC---------TGTCCCAAAGTCAGAGGTCCTGGGCCTGAGGGATGGGTTTGTTGCAAGGGGCTGGCTCCTGATAGC-AACCTTCATGGCTCCCTGTATATGTGGAATGAATCTCTAATTGTGGAGAATTGagaatgggggggggggggggggcg-tggTTAGATGCCCTTGAAGTGCTGTGCCGGTGTAGCTTGTGTCGTGATACCTCTTTGTGTCGTTGTAAGTGTGATCATGCCCACATCTTTCTGACATGGTCTTTTGCCTCTGAATTTGCAGTTTCAAATTTAACAGATTTAAACAGA-TTGGTGGCCCTTATGTATCTAAAAGAGAAACATGTCATCTCCAGGACCaactacataatttg-cagggctCAGTGCA-----AAATGAAACAGAGGGACTCAAGCTCAAAAATGATTAAAAGTGTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82508613 444 + 85787240 TAGGAAGAACTAAACTTTTGCAGAGCTTCATTCCTGTCCACAGAAC---------TGTCCCAAAGTCAGAGGTCCTGGGCCTGAGGGATGGGTTTGTTGCGAGGGGCTGGCCCCTGATAGCAAACCTTCACGGCTCCCTGTACATGTGGAATGAATCTCTAACTGTGGAGAATTGAGAAT------------GGGGGGG-TGATTAGATGCCCTTGAAGTGCTGTGCCGGTGTAGCTTGTGTCGTGATACCTCTTTGTGTCGTTGTAAATATGATCATGCCCACATCTTTCTGACATGGTCTTTTGCCTCTGAATTTGCAGTTTCAAATTTAACAGATTTAAACAGA-TTGGTGGCCCGTATGTATCTAAAAGAGAAACATGTCATCTCTaggaccaactacataatttg-cagggctcagtgca-----aaatgaaacagagggactgtagctcaaaaatgatt--aagtgtca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14188033 443 - 49578535 TGGGAGGAATTAAACTCTTGCAGAGCTTCCTCGCTGTGCACAGCATCATG----GTGTCCCAAAGTTCGAGGTCCTGGGCCTGAGGGGTGGGTTTGTTGCG-GGGACTGGCTTCCCACAGGAAACCTTTCTGGCTCCCCGTAAATGTGGAAGGACTCTCCGATT---GAGAATTGAGAAT------------GGGGGCA-GGGGTAGATTCC-TTGAACTGTTTTGCCAGCGTGGCTTGTATGATGATGCCTCTTTGTGTCTTT----GTAGGCTCCTGCCCACAGCTTTCTGACATGGTCTTTTGCATCTGAATTTGCAGTTTCAATTTTAACAGACTTTAACAGA-TTGGTATCCCATATGTCTCTAAAAGAGAAACACGTCATCACcaggaccaactatgtaattcaccagggctcagtgca-----aaatgaaacacaaggaccctagctcaaaaataattaaaaatgtca i calJac3.chr19 C 0 I 1911 s mm10.chr1 178775003 377 + 195471971 TAAAAAAAATGAAGGTT------GGCTTCTTCAAGGTCTATAGGAAGAAGCCCAATGGCCCAGCATCCAAGGTCCTGGGCCT-------GGGTTTATTACTTGTAGCTACTTCTGGATAATTAACCTCCATGACTCTATCTGCCTGTGGCATGGCTCTCTAACTGTGAATAAATGATAGC------------AAGGACA-T--TCTGAGCCCCTATGAATG-----------------------TGCTGCTTTTTTGTGG--------AGATCATCATGC-CACGTTTTCCTAAAATG---------------ATGTGGGGGGTTAAA-TTGACAGATATCAAAAGATTTAATGACTCAAAACTACCTAAAA------------------AGGACCACCTACACCGTTTT-CATAGTTTATCCCAGGAATAAATGAGAGGCAAGGTCTTT-GCTTGAAAGTGACTCGGA--GTCA i mm10.chr1 I 23 C 0 e canFam3.chr7 36343647 819 + 80974532 I a score=561142.000000 s hg38.chr1_KI270759v1_alt 181679 237 + 425601 atgtagcaacagcagagtaggcaaccaagcacagggccTACGTGCTGGCCAGTACTCTAGC------CTGGAAAAGTGCAAGACCTTCTGCAGGTGGAAGCTT-CACAGTGTGCCTTCAGGGTCTGCTTTTGG-----------GCTTTCTGCCAATCTGGCTACATACTTACCCTTTGACACAATCAAGGGCAAAGAGTTAAAGGAAAG-------GTA-------GTCTTGAGGCCTGAACTCTCTTC-TAACCCTA-tttttttt---ctt s panTro4.chr1 224934056 225 + 228333871 atgtagcaacagcagagtaggcaaccaagcgc--------------ggCCAGCACTCTAGC------CTGGAAAAGCGCAAGACCTTCTGCAGGTAGAAGCTT-CACAGTGTGCCTTCAGGGTCTGCTTTTGG-----------GCTTTCTGCCAATCTGGCTACATACTTACCCTTTGACACAATCAAGGGCAAAGAGTTAAAGGAAAG-------GTA-------GTCTTGAGGCCTGAACTCTCTTC-TAACCCTA-tttttttt-ttctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226292865 238 - 229942017 atgtagcaacagcagagtaggcaaccaagcatggggccTACGTGCTGGCCAGCACTCTAGC------CTGGAAAAGCACAAGACCTTCTGCAGGTGGAAGCTT-CACAGTGTGCCTTCAGGGTCTGCTTTTGG-----------GCTTTCTGCCAATCTGGCTACATACTTACTCTTTGACACAATCAAAGGCAAAGAGTTAAAGGAAAG-------GTA-------GTCTTGAGGCCTGAACTCTCTTC-TAACCCTA-tttttttt--tctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140182167 243 - 143122389 atgtagcaacagcagagtagtcaaccaagcatggggccTACGTGCTGGCCAGCACTCTAGCGGGGAAAAGGAAAAGCGTAAGACCTTCTGCAGGTGGAAGCTT-CACAGTGTGCCTGCAGGGTCTGCTTTTGG-----------GCTTTCTGCCAATCTGGCTACATACTTACTCTTTGACATAATCAAAGTCAAAGAGTTAAAGGAAAG-------GTA-------GTCTTGAGGCCTGAACTCTCTTC-TAACCCTA-tttttttt---ctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16897039 239 - 229590362 atgcagcaacagcagagtagtcaaccgagcgtggggccTGCATGCTGGCCACCACTCTAGC------GTGGAAAAGCACAAGACCTTCTTCAGGTCAAAGCTT-CGCAGCGTGCCTTCACGGTCTGCTTCTGG-----------GCTTTCTGCCAAGCTGCCTACACAC-GACTCTTTGACACAATCAAAGGCAAAGAGTTAAAGGACAG-------GTA-------GTCTTGAGGCCTGAACTCTCTAC-TAATCCTA-tttttttttttctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223660345 239 - 227556264 atgcagcaacagcagagtagtcaaccgagcgtggggccTGCATGCTGGCCACCACTCTAGC------GTGGAAAAGCACAAGACCTTCTTCAGGTCAAAGCTT-CGCAGCGTGCCTTCACGGTCTGCTTCTGG-----------GCTTTCTGCCAAGCTGCCTACACAC-TACTCTTTGACACAATCAAAGGCAAAGAGTTAAAGGAAAG-------GTA-------GTCTTGAGGCCTGAACTCTCTAC-TAATCCTA-tttttttttttctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16710704 240 - 220367699 ATGCAGCAACAGCAGAGCAGTCAACCGAGCGTGGGGCCTGCATGCTGGCCACCCCCCTAGC------GTGGAAAAGCACAAGACCTTCTTCAGGTCAAAGCTT-CGCAGCGCGCCTTCACGGTCTGCTTCTGG-----------GCTTTCTGCCAAGCTGCCTACACAC-TACTCTTTGACACAGTCAAAGGCAAAGAGTTAAAGGAAAG-------GTA-------GTCTTGAGGCCTGAACTCTCTAc-taatcctattttttttttttctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82509057 240 + 85787240 atgcagcaacagcagagtagtcaaccaagcgtggggccTGCATGCTGGCCACCACTCTAGC------GTGGAAAAGCGCAAGACCTTCTTCAGGTCAAAGCTT-CGCAGCGTGCCTTCACGGTCTGCTTCTGG-----------GCTTTCTGCCAAGCTGCCTACACAC-TACTCTTTGACACAATCAAAGGCAAAGAGTTAAAGGAAAG-------GTA-------GTCTTGAGGCCTGAACTCTCTAC-TAATCCttttttttcttcttctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14190387 172 - 49578535 ATGTAGTGACAACAGAGTCATCGAGCAAGCACGCAGCCTATGTGCCGGCCAGCACCCCAGC------GTGGACAAGTGCGAGCCCCT-----------------------------------------------------------------------------------TACCCTTTGACATAATGAAAGGCAAAGAGTTAAAGGAAAGCTAGTTAGTA-------GTCCTGAGGCCGGCGCCCTCTTC-TGACCCCT-CGCTGTGT----GT i calJac3.chr19 I 1911 C 0 s mm10.chr1 178775380 250 + 195471971 ACATAGCAACAGGGAAGTGTTCAGG-GAGTATGGGGTCTGTGCAGCAACTGCCA--CTAGC------AAAGAAGCAAGCTAA---TCCTGCAGGTTCAGGCTTCCATGGTTTGCTTTGGTTGGCTGGCTTTGGCCCGACCTACTCCCTTTTGGTAGCCTGGCTCTGTGCTTATTAATTGATCTCAT-AGAGATGATGTATCAAAAGAAGA-------ATAGTTTCTGGTCCTAAGGTTTAAACTCTCTTCTTCAACCTA-TTTTTATTTTT--- i mm10.chr1 C 0 I 747 e canFam3.chr7 36343647 819 + 80974532 I a score=462330.000000 s hg38.chr1_KI270759v1_alt 181916 156 + 425601 cttttgagacagggtctcagtccatttgcccaggctggagtgcagtgacacaatctcagctcactgcagcctggacctcggctcaggtgattctcctacctacgcctcccgagtagctaggactacaggcacatgtcaccacatccagctaa-----------tttt s panTro4.chr1 224934281 156 + 228333871 cttttgagacagggtctcactccatttgcccaggctggagtgcagtgacacaatctcagctcactgcagcctggacctcggctcaggtgattctcctgcctacgcctcccgagtagctaggactacaggcacatgtcaccacatccagctaa-----------tttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226293103 167 - 229942017 cttttgagacagggtctcactccatttgcccaggctggagtgcagtgacacaatctcagctcactgcagcctggaccttggctcaggtgattctcccacctacgcctcccaagtagctaggactacaggcgcatgtcaccacgttcagctaatgttttttttttttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140182410 161 - 143122389 cttttgagacacgatctcactccatttgcccaggctggagtgtagtgacacaatctcagctcactgcagcctggacctcggctcaggtgattctcccacctacacctcccaagtagctgggactacaggcgcatgtcaccacatccagccaa------ttttttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16897278 160 - 229590362 cttttgagacagggtctcgctccatgtgcccaggctggagtgcagtgacatactctcagctcactgcagcctggacctcggctcaggtgattctcccacctgagcctcccaagtagctagtactacaggcgcatgtcaccacatccagctaa-------tttttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223660584 159 - 227556264 cttttgagacagggtctcgctccatgtgcccaggctggagtgcagtgacatactctcagctcactgcagcctggacctcggctcaggtgattctcccacctgagcctcccaagtagctagtactacaggcgcatgtcaccacatccagctaa--------ttttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16710944 161 - 220367699 cttttgagacagggtctcgctccatgtgcccaggctggagtgcagtgacatactctcagctcactgcagcctggacctcggctcaggtgattctcccacctgcgcctcccaagtagctagtactacaggcgcatgtcaccacgtccagctaa------ttttttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82509297 160 + 85787240 cttttgagacagggtctcgctccatttgcccaggctggagtgcagtgacatactctcagctcactgcagcctggacctcggctcaggtgattctcacacctgagcctcccaagtagctaggactacaggtgcatgtcaccacgtccagctaa-------tttttttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14190559 156 - 49578535 Cttttgagacagtgcctcactccatttgcccaggctggagtgcagtgacacagtctcagctcactgcagccttcactttggctcagctgattctcccacctaagccttccaagtagctgggactacaggtgcatgttactacacccggctaa-----------tttc i calJac3.chr19 C 0 C 0 e mm10.chr1 178775630 747 + 195471971 I e canFam3.chr7 36343647 819 + 80974532 I a score=643893.000000 s hg38.chr1_KI270759v1_alt 182072 320 + 425601 ttttttttttttt-gagacaagagtctcgctctgtctcatttgcatttgcatttcagacgcgccaggctggagtacagtggcgcgatatcggctcactgcaacctctgcctcccaggttcaagcaatcctcctgcctcagcctcctgagaagctgggattataggcgcct-gccaccatgcccagctaattttgtatttttagtagagatgaggcttctccaagtcggccacgttggtctcgaacttctgacctcaggtgatccacccacctcagcctgccaaagtgctgg----gattacaggcatgagctgccacgcccggcca s panTro4.chr1 224934437 295 + 228333871 ttttttttttttttgagaca-gagtctcgctctgtc-------------------------gccaggctggagtacagtggcgcgatatcggctcactgcaacctctgcctcccaggttcaagcaatcctcctgcctcagcctcctgagaagctgggattataggcgccc-accaccatgcccagctaattttgcatttttagtagagatgaggtttcaccatgttggccatgctggtctcgaacttctgacctcaggtgatccacccacctcagcctgccaaagtgctgg----gattacaggcatgagctgccacgcccggcca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226293270 299 - 229942017 ttttttttttttttgagaca-gagtctcgcgctgtc-------------------------gccaggctggagtgcagtggcgtgatctcggctcactgcaacctctgcctcccgggttcaagcgatcctcctgcctcagcctcccgagtagctgggattataggtgccc-gccaccatgcccagctaattttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaacttctgacctcaggtgatccgcctacctcagcctgccaaagtgcttggattgattacaggcatgagctgccatgcccggcct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140182571 290 - 143122389 ttttttttttttatgagaca-gagtcttgctctgtc-------------------------gccaggctggagtacggtggcgcgatcttggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggattataggcaccc-gccaccatgcccagctaattttgtatttttagtagagatggggtttcaccatgttggc-----tggtctcgaacttctgacctcaggtgatccgcccacctcagcctgccaaagtgcggg----gattacaggcgtgagctgccacgcccagcct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16897438 290 - 229590362 ttttctttttttttgagaca-gagtcttgctctgtc-------------------------cccaggctggagtacagtggtgtgatcttggctcactacaagctctgcctcctgggttcaagggatcctcctgcctcagcctcccaagtagctgggattataggcgactggccaccacgcccagctaattttgtatttttagacg------ggttttaccatgttggccaggctggtctcgaacttctgacctcaggtgatccacccacctcagcctcccaaagtgctga----gattacaggcatgagctgccacgcccggcct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223660743 290 - 227556264 ttctctttttttttgagaca-gagtcttgctctgtc-------------------------cccaggctggagtacagtggtgtgatcttggctcactgcaagctctgcctcctgggttcaagggatcctcctgcctcagcctcccaagtagctgggattataggcgactggccaccacgcccagctaattttgtatttttagacg------ggttttaccatgttggccaggctggtctcgaacttctgacctcaggtgatccacccacctcagcctcccaaagtgctga----gattacaggcatgagctgccacgcccggcct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16711105 290 - 220367699 ttttctttttttttgagaca-gagtcttgctctgtc-------------------------cccaggctggagtacagtggtgtgatcttggctcactgcaagctctgcctcctgcgttcaagggatcctcctgcctcagcctcccaagtagctgggattataagcgactggccaccacgcccagctaattttgtatttttagacg------ggttttaccatgttggccaggctggtctcgaacttctgacctcaggtgatccacccaccttagcctcccaaagtgctga----gattacaggcatgagccgccacgcccggcct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82509457 290 + 85787240 tttttcttttttttgagaca-gagtcttgctctgtc-------------------------cccaggctggagtacagtggtgtgatcttggctcactgcaagctctgcctcctgggttcaagggatcctcgtggctcagcctcccaagtagctgggattataggcgactggccaccacgcccagctaattttgtatttttagacg------ggttttaccatgttggccaggctggtctcgaacttctgacctcaggtgatccacccacctcagcctcccaaagtgctga----gattacaggcatgagctgccacgcccggcct i chlSab2.chr25 C 0 C 0 e mm10.chr1 178775630 747 + 195471971 I e canFam3.chr7 36343647 819 + 80974532 I e calJac3.chr19 14190715 0 - 49578535 C a score=405393.000000 s hg38.chr1_KI270759v1_alt 182392 137 + 425601 tgta-tctttttaagtacaggtggaggtctcattatgttgcacaggctggtttcaaactcctggactcaagccatctgcccatcttggcctcccaaagcactgagattaccagcgtgagccaccaca-ctggccAACCC s panTro4.chr1 224934732 137 + 228333871 tgta-tctttttaagtacaggtggaggtctcattatgttgcacaggctggtttcaaactcctggactcaagccatctgcccatctcggcctcccaaagcactgagattaccagcgtgagccaccaca-ctggccAACCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226293569 135 - 229942017 tgta-tttttttaatg--agatggaggtctcattatgttgcacaggctggtttcaaactcctggactcaagccatctgcccgtctcggcctcccaaagctctgagattaccagcgtgagccacaaca-ccggccAACCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140182861 138 - 143122389 tgtattttttttaagtacagatgggggtctcattatgttgcacaggctggtttcaaactcttggactcaagccatctgcccgtctcggcctcccaaagcactgagattaccagcgtgagccaccaca-ccggccAACCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16897728 137 - 229590362 tgta-tttttttaagtacagatggaggtctcattatgttgcataggctggtttcaaactcctggactcaagcgatctgcccgtctcggcctcccagagcgccaagattaccagcgtgagccaccaca-cTGGCCAACCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223661033 137 - 227556264 tgta-tttttttaagtacagatggaggtctcattatgttgcataggctggtttcaaactcctggactcaagcgatctgcccgtctcggcctcccagagcgccaagattaccagcgtgagccaccaca-cTGGCCAACCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16711395 137 - 220367699 tgta-tttttttaagtacagatggaggtctcattatgttgcataggctggtttcaaactcctggactcaagcgatctgcccgtctcggcctcccagagcgccaagattaccagcgtgagccaccaca-ctggccaacCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82509747 137 + 85787240 tgta-tttttttaagtacagatggaggtctcattatgttgcataggctggtttcaaactcctggactcaagcgatctgcccgtctcggcctcccagagcgccaagattaccagcgtgagccaccaca-ctggccAACCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14190715 136 - 49578535 tgta-tttttttgagtacagatggaggtcttgttatgttgcacaggctggtttcaaactcctggactgaagcaatctgcccgtcttggcctcccacag--tcgggattgctagcgcaggccgccacgcctggccAACCC i calJac3.chr19 C 0 C 0 e mm10.chr1 178775630 747 + 195471971 I e canFam3.chr7 36343647 819 + 80974532 I a score=587313.000000 s hg38.chr1_KI270759v1_alt 182529 210 + 425601 AGACTTTCCACTGGTACACTGTC-------TTCATTGCTTTGATAGCAACTTTTAGGCTCCCTTAGCTTTAAAAAAGAATCCTCTAACCATATGGGGAAAAAAAAA---AATCAGCAACAACTTTGTACCCACCTGACATTCGGCCAGAATTTTTCCAACAGAACCTAACAATAGAT----------------------------------------------------ATGCTCTCTGAAAACTCTACCCAGAT-CGTAC-----------------------ACTCCTTGCTGG------ s panTro4.chr1 224934869 210 + 228333871 AGACTTTCCACTGGTACGCTGTC-------TTCATTGCTTTGATAGCAACTTTTAGGCTCACTTATCTTTAAAAAAGAATCCTCTAACCATACGGGGAAAAAAAAA---AATCAGCAACAACTTTGTACCCACCTGACATTTGGCCAGAATTTTTCCAAAAGAACCTAACAATAGGT----------------------------------------------------ATGCTCTCTGAAAACTCTACCCAGAT-CGTAC-----------------------ACTCCTTGCTGG------ i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226293704 208 - 229942017 ATACTTTCCACTGGTACAGTGTC-------TTCATTGCTTTGATAGCAACTTTTATGCTCACTTAGCTTTAAAAAAGAATCCTCTAACCATAT--GAAAAAAAAAA---AATCAGCAACAACTTTGTACCCACCTGATATTGGGCCAGAAGTTTTCCAACAGAACCTAACAATAGAT----------------------------------------------------ATGCTCTCTGAAAACTCTACCCAGAT-CATAC-----------------------ACTCCTTGCTGG------ i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140182999 208 - 143122389 ATACTTCCCCTTGGTACAGTGTC-------TTCATTGCTTTGATAGCAACTTTTAGGCTCACTTAGCTTTAAAAAAGAATCCTCTAACCATACGGGGAAAAAAAAA---AATCAGCAATAACTTTGTACCCACCTGACATTTGGCCAGAATTTTTCCCACAGAACCTAACAATAGAT----------------------------------------------------ACACTCTCTGAAAA--CTACCCAAAT-CATAC-----------------------ACTCCTTGCTGG------ i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16897865 217 - 229590362 ATACTTTCCACTGGTACAGCGTCTTC---ATTCATTGTTTTAATAGCAACTTTTAGGCTCACTTAGCTTCAAAAAAGAACCCTCTAACCATACGGGAAAAAAAAAAAAAAATCATCAACAACTTTGTACCCACCTGACATTTGGCCAGAATTTTTCCAACAGAGCCTAACAATAGAT----------------------------------------------------ATGCTCTCTGAAAACTCTACCCAAAT-CGTAC-----------------------AATCCTTGCTGT------ i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223661170 217 - 227556264 ATACTTTCCACTGGTACAGCGTCTTC---ATTCATTGTTTTAATAGCAACTTTTAGGCTCACTTAGCTTCAAAAAAGAACCCTCTAACCATACGGAAAAAAAAAAAAATAATCATCAACAACTTTGTACCCACCTGACATTTGGCCAGAATTTTTCCAACAGAGCCTAACAATAGAT----------------------------------------------------ATGCTCTCTGAAAACTCTACCCAAAT-CGTAC-----------------------AATCCTTGCTGT------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16711532 217 - 220367699 ATACTTTCCACTGGTACAGCGTTTTC---ATTCATTGTTTTAATAGCAACTTTTAGGCTCACTTAGCTTCAAAAAAGAACCCTCTAACcatacggaaaaaaaaaaaaaaaatcagcaacaaCTTTGTACCCACCTGACATTTGGCCAGAATTTTTCCAACAGAGCCTAACAATAGAT----------------------------------------------------ATGCTCTCTGAAAACTCTACCCAAAT-CGTAC-----------------------AATCCTTGCTGT------ i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82509884 208 + 85787240 GTACTTTCCACTGGTACAGCGTC-------TTCATTGCTTTGATAGCAACTTTTAGACCCACTTAGCTTCAAAAAAGAACCCTCTAACCATATGGAAAAAAAAA-----AATCAGCAACAACTTTGTACCCACCTGACATTTGGCCAGAATTTTTCCAACAGAGCCTAACAATAGAT----------------------------------------------------ATGCTCTCTGAAAACTCTACCCAAAT-CGTAC-----------------------ACTCCTTGCTGT------ i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14190851 201 - 49578535 GTACTCGCCATTGGTA--GTGTC-------TTCACTGCTTTGACAGTAACTTTTAGGCTCCCTTGGCTTCAAAAAAGAATCCTCTAACCAAACAGAAAAAAA-------AATTATCAACAGCTTTGTACCCATCTGACATTCGGCCAGAAGTTTTCCGGTAGATCCCAACAACGG-------------------------------------------------------TACTCTCTGAAAACCCTAACCACAC-AATAC-----------------------GCTCCTTGCCGC------ i calJac3.chr19 C 0 I 468 s canFam3.chr7 36344466 293 + 80974532 AAACTTTCCATCAGTACAGTGCCTTCTCTCTTCATTGCATTGGTGGCAACTTTTAGGCTCACTTAGCTTTTAAAAAATATCCTCTAACCACA--GGAAAAAA-------GTGTACAGAAGGCTTTGCATTGACCTGACATTTGCCCACAATCTTGCCAACAGATCCCAATAAGAAATTACTGATCATTAGAAATATGTCCATTGTAAAATATCCTTCTGAATTTCTGGCATTTTCTTGGACAAACTTATTGAAACACATGCTGAGGGATTGATGCACATGTAGTACTCCCTCCTTCCCCAGA i canFam3.chr7 I 819 C 0 e mm10.chr1 178775630 747 + 195471971 I a score=1030047.000000 s hg38.chr1_KI270759v1_alt 182739 318 + 425601 GTAGGATTGTTTCAGAGGATATGAAGGAC--AAGGGACTGAGCCATGACACCTGTCACTT-CCCG-----TCTG---AGCAGTTCCTGAAGAAACAGCCCCCGGGGAATGAACTACCCCCTCTGCCTC---GGGGACAGGCACCTCCTGGTCCACATCCATCCCTGGAATTAGATCGGAGCCACAGATGCTATCACTCCTCTGCCGTGGCCCCATCCTCCTCTGTCTGGCTTTTGATGAACTGAAGACTGGGGTCCGGGTTGTAATGGAGACTT-AGAGTTGAGTGAAGCATTTTAGCTTTAAGAAGATTATTATAATTATCTCAAGGCACTG s panTro4.chr1 224935079 318 + 228333871 GTAGGATTGTTTCAGAGGATATGAAGGAC--AAGGGACTGAGCCATGACACCTGTCACTT-CCCA-----TCTG---AGCAGTTCCTGAAGAAACAGCCCCCGGGGAATGAACTACCCCCCCTGCCTT---GGGGACAGGCACCTCCTGGTCCACGTCCATCCCTGGAATTAGATCGGAGCCACAGATGCTGTCACTCCTCTGCCGTGGCCCCATTCTCCTCTGTCTGGCTTTTGATGAACTGAAGACTGGGGTCCGGGTTGTAATGGAGACTT-AGAGTTGAGTGAAGCATTTTAGCTTTAAGAAGATTATTATAATTATCTCAAGGCACTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226293912 319 - 229942017 GTAGGATTGTTTCAGGGGATATGAAGGAC--AAGGGACTGAGCCATGACACCTGTCACTT-CCCGTCTGATCTG---AGCAGTTCCTGAAGAAACAGCCCCCGGGGAATGAATTCCCCCCGCTGCCTC---GGGGATGGGCAACTCCTGGTTCATGTCCATCCCTGGAATTAGATCTGAGCCACATATCCTGTCACTCCTCTGCGGTGGTCCCATCCTCCTCTGTCTGGCTTTTGATGAGCTGAAGACT-GGGTCCGGGTTGTAATGGAGACTT-AGAGTTGAGTGAAGCATTTTAGCTTT---AAGATTATTATAATTATCTCAAGGCACTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140183207 318 - 143122389 GCAGGATTGTTTCAGAGGATACGAAGGAC--AAGGGACTGAGCCATGACACCTGTCACTT-CCTG-----TCTG---AGCAGTTCCTGAAGAAACAGCCCCTGGGGAATGAATTACCCCCGCTGCCTC---GGGGACAGGCACCTCCTGGTCCATGTCCATCCCTGGAATTAGATCTGAGCCACAGATTCTGTCACTCCTCTGCTGTGGCCCCATCCTCCTCTGTCTGGCTTTTGATGAACTGAAGACTGGGGTCCGGGTTGTAATGGAGACTT-AGAGTTGAGTGAAGCATTTTAGCTTTAAGAAGATTATTATAATTATCTCAAGGCACTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16898082 317 - 229590362 GTAGGATTGTTTCAGAGGATATGAAGGAC--AAGGGACTGAGCCATGACACCTGTCACTT-CCCG-----TCTG---AGCAGTTCCTGAAGAAACAGCCCCTGGGGAATGAATTACCCTCGCTGCCTC---GGGGACAGGCACCTCCTGGTCCATGTCCATCCCTGGAGTCAGATCTGAGCCGTAGACCCTGTCACTCCTCTGCTGTGGCCCCATCCTCCTCTGTCTGGCTTTTGATGAACTGAAGACTGGGAT-CGGGTTATAATGGAGACTT-AGAGTTGAGTGAAGCATTTTAGCTTTAAGAAGATTATTATAATTATCTCAAGGCACTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223661387 318 - 227556264 GTAGGATTGTTTCAGAGGATATGAAGAAC--AAGGGACTGAGCCATGACACCTGTCACTT-CCCG-----TCTG---AGCAGTTCCTGAAGAAACAGCCCCTGGGGAATGAATTACCCTCGCTGCCTC---GGGGACAGGCACCTCCTGGTCCATGTCCATCCCTGGAGTCAGATCTGAGCCGTAGACCCTGTCACTCCTCTGCTGTGGCCCCATCCTCCTCTGTCTGGCTTTTGATGAACTGAAGACTGGGATCCGGGTTATAATGGAGACTT-AGAGTTGAGTGAAGCATTTTAGCTTTAAGAAGATTATTATAATTATCTCAAGGCACTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16711749 318 - 220367699 GTAGGATTGTTTCAGAGGATATGAAGGAC--AAGGGACTGAGCCATGACACCTGTCACTT-CCCG-----TCTG---AGCAGTTCCTGAAGAAACAGCCCCTGGGGAATGAATTACCCTCGCTGCCTT---GGGGACAGGCACCTCCTGGTCCATGTCCATCCCTGGAGTCAGATCTGAGCCATAGATCCTGTCACTCCTCTGCTGTGGCCCCATCCTCCTCTGTCTGGCTTTTGATGGACTGAAGACTGGGATCTGGGTTATAATGGAGACTT-AGAGTTGAGTGAAGCATTTTAGCTTTAAGAAGATTATTATAATTATCTCAAGGCACTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82510092 318 + 85787240 GTAGGATTGTTTCAGAGGATGTGAAGGAC--AAGGGACTGAGCCATGACACCTGTCACTT-CCCG-----TCTG---AGCAGTTCCTGAAGAAACAGCCGCTGGGGAATGAATTACCCTCGCTGCCTC---GGGGACAGGCACCGCCTGGTCCATGTCCATCCCTGGAGTCAGATCTGAGCCATAGATCCTGTCACTCCTCTGCTGTGGCCCCATCCTCCTCTGTCTGGCTTTTGATGAACTGAAGACTGGGATCCGGGTTATAATGGAGACTT-AGAGTTGAGTGAAGCATTTTAGCTTTAAGAAGATTATTATAATTATCTCAAGGCACTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14191520 312 - 49578535 GTAGGATTGTTTCAGAGGATAGGAAAGAC--AAGGGACTGAGCTGTGACATCTGTCACTTCCCCA-----TCTGAGCAGCAGTTCCTGAAGAAACAGCCTCTAGGGAATGAATTACCCTTGCTGCCCCCGAGGGGACAGGCA---CCTGCTCTTTGTCCGTCCCTAGAATTAGGTCTGAGCCACAGATCCTGTCATTCCTCTGCTGTGGCCC----CTCCTCTGTCTGGCTTTGGATAAACTGAAGACT-------GGGTTGTAATTGAGACTCAAGAGTAGAACGAAGCATTTTAGCTGTAAGAAGATTATTATAATTATCTCCAGGCACCG i calJac3.chr19 I 468 C 0 s canFam3.chr7 36344759 281 + 80974532 GAGGGACCATCTCAGAGGATATGACAGCTGGAGAGGGTCTAGCCAAGGCA--GGTCACAT-GGCA-----TCTA---AGCAGCATCACACAGTCCAGTCCCCAGA------------------GCCTC---AGG-----------TCTGG-------CCACCCCTGGGATTAGATCAGGACCACAGAT-CAGCCTCTTCTCTGCTGTGGCCCCTTCCTTCTTCGTCTGGCTTTTGATGAACAGAAGACTCGGGTCTGGGCTCTAATGGACATTT-GCAGACAAGTGACGCATTTGAGCTTGGAGAAGATTATTATAATTATCCCAGGGCCCTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178775630 747 + 195471971 I a score=1485785.000000 s hg38.chr1_KI270759v1_alt 183057 408 + 425601 AAGGGCTGCTTCATTTGCATTTCAGACACTAAAATCAGAGGGCAGATCTTTAAGAGGTTAATTTTGTGAGTGAGTCCTTAATAACAGAGGGACCAAGACTCGATTCTTTATGCCTTAGGCTAGGTTTGCAGTTGGTAGATGCAAAATATGCTGATAAGATTAAAGCTCCTCTAGTGACTCTTAAGCCTCAGGCTCTTTTATTTGCAAATGTCCTGCACCCTCCATCTCAGAGAACTCTCTAGGCTCCGGTACTCTAGAATCCCTTACAGTGG---------ATTTGCATGGACAGGAAAGCGAATTCTCATCTCTTCCAA-TCACT---GCAAGACATGGAACGGATAGTCTGGC-GGCACG-TC-TGGCAGC----TGAACCTCTTCACTGAGAATCT----------AGGTAAAGGCCACTTACTGATCA-TTATAA s panTro4.chr1 224935397 408 + 228333871 AAGGGCTGCTTCATTTGCATTTCAGACACTAAAATCAGAGGGCAGATCTTTAAGAGGTTAATTTTGTGAGTGAGTCCTTAATAACAGAGGGACCAAGACTAGATTCTTTATGCCTTAGGCTAGGTTTGCAGTTGGTAGATGCAAAATATGCTGATAAGATTAAAGCTCCTCTAGTGACTCTTAAGCCTCAGGCTCTTTTATTTGCAAATGTCCTGCACCCTCCATCTCAGAGAACTCTCTAGGCTCCGGTACTCGAGAATCCCTTACAGTGG---------ATTTGCATGGACAGGAAAGCGAATTCTCATCTCTTCCAA-TCACT---GCAAGACATGGAACGGATAGTCCGGC-TGCACG-TC-TGGCAGC----TGAACCTCTTCACTGAGAATCT----------AGGTAAAGGCCACTTACTGATCA-TTATAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226294231 397 - 229942017 AAGGGCTGCTTCATTTGCATTTCAGACACTAAAATCAGAGGGCAGATCTTTAAGAGGTTAATTTTGTGAGTGAGTCCTTAATAACCGAGGGACCAAGACTAGATTCTTTATGCCTTAGGCTGGGTTTGCAGTTGGTAGATGCAAAATATGCTGATAAGATTAAAGCTCCTCTAGTGACCCTTAAGCCTCAGGCTCTTTTATTTGCAAATGTCCTCTACCCTCCATCTCAGAGAACTCTCTAGGCTCTGATACTCTAGAATCCCTTACAGTGG---------ATTTGCATGGACAGGAAAGCAAATTCTTATCTCTTCCAG-TCACT---GCAAGAC-----------TATCCGGC-TCCGCG-TC-TGGCAGC----TGAACCTCTTCACTGAGAATCT----------AGGTAAAGGCCACTTACTGATCA-TTATAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140183525 409 - 143122389 AAGGGCTGCTTCATTTGCATTTCAGACACTAAAATCAGAGGGCAGATCTTTAAGAGGTTAATTTTGTGAGCGAGTCCTTAATAACAGAGGGACCAAGACTAGATTCTTCATGCCTTAGGCTGGGTTTGCAGTTGGTAGATGCAAAATATGCTGATAAGACTAAAGCTCCTCTAGTGACTCTTAAGCCTCAGGCTCTTTTATTTGCAAATGTCCTCTACCCTCCATCTCAGAGAACTCTCTAGGCTCCGGTACTCTAGAATCCCTTACAGCAG---------ATTTGCATGGACAGGAAAGCAAACTCTTATCTCTTCCAA-TCACT---GCAAGACGTGGAACTGATAGTCCAGC-TCCACG-TC-TGGCGGC----TAAACCTCTTCACTGAGAATCT----------AGGTAAAGGCCACTTACTGATCATTTATAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16898399 408 - 229590362 AAGGGCTGCTTCATTTGCATTTCAGACACTAAAATCAGAGGGCAGATCTTTAAGAGGTTAATTTTGTGAGTGAGTCCTTAATAACAGAGGGACCAAGACTAGATTCTTTATGCCTTAGGCTGGGTTTGCAGTTGGTAGATGCAAAATATGCTGATAAGATTAAAGCTCCTTGAGTGACTCTTAAGCCTCAGGCTCTTTTATTTGCAAATGTCCTCTACCCTCCATCTCAGAGAACTCTCCAGGCTCTGGTACTCTAGAATCCCTTACAGCAG---------ATTTGCATGGACAGGAAAGCAAATTCGTATCTCTTCCAA-TCACT---GCAGGACATGGAACTGATGGTCCGGC-TCCACG-TC-TGGCAGC----TAAACCGCTTCACTGAGGACCT----------AGGTAAAGGCCACTTACTGATCA-TTAGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223661705 408 - 227556264 AAGGGCTGCTTCATTTGCATTTCAGACACTAAAATCAGAGGGCAGATCTTTAAGAGGTTAATTTTGTGAGTGAGTCCTTAATAACAGAGGGACCAAGACTAGATTCTTTATGCCTTAGGCTGGGTTTGCAGTTGGTAGATGCAAAATATGCTCATAAGATTAAAGCTCCTTGAGTGACTCTTAAGCCTCAGGCTCTTTTATTTGCAAATGTCCTCCACCCTCCATCTCAGAGAACTCTCCAGGCTCTGGTACTCTAGAATCCCTTACAGCAG---------ATTTGCATGGACAGGAAAGCAAATTCGTATCTCTTCCAA-TCACT---GCAGGACATGGAACTGATGGTCCGGC-TCCACG-TC-TGGCAGC----TAAACCGCTTCACTGAGGACCT----------AGGTAAAGGCCACTTACTGATCA-TTAGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16712067 408 - 220367699 AAGGGCTGCTTCATTTGCATTTCAGACACTAAAATCAGAGGGCAGATCTTTAAGAGGTTAATTTTGTGAGTGAGTCCTTAATAACAGAGGGACCAAGACTAGATTCTTTATGCCTTAGGCTGGGTTTGCAGTTGGTAGATGCAAAATATGCTGATAAGATTAAAGCTCCTTGAGTGACTCTTAAGCCTCAGGCTCTTTTATTTGCAAATGTCCTCTACCCTCCATCTCAGAGAACTCTCCAGGCTCTGGTACTCTAGAATCCCTTACAGCAG---------ATTTGCATGGACAGGAAAGCAAATTCGTATCTCTTGCAA-TCACT---GCAGGACATGGAACTGACGGTCCGGC-TCCACG-TC-TGGCAGC----TAAACCGCTTCACTGAGGACCT----------AGGTAAAGGCCACTTACTGATCA-TTAGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82510410 408 + 85787240 AAGGGCTGCTTCATTTGCATTTCAGACACTAAAATCAGAGGGCAGATCTTCAAGAGGTTAATTTTGTGAGTGAGTCCTTAATAACAGAGGGACCAAGACTAGATTCTTTATGCCTTAGGCTGGGTTTGCAGTTGGTAGATGCAAAATGTGCTGATAAGATTAAAGCTCCTTGAGTGACTCTTAAGCCTCAGGCTCTTTTATTTGCAAATGTCCTCTACCCTCCATCTCAGAGAACTCTCCAGGCTCTGGTACTCTAGAATCCCTTCCAGCAG---------ATTTGCATGGACAGGAAAGCAAATTCGTATCTCTTGCAA-TCACT---GCAGGACATGGAACTGATGGTCCGGC-TCCACG-TC-TGGCAGC----TAAACCGCTTCACTGAGGATCT----------AGGTAAAGGCCACTTACTGTTCA-TTAGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14191832 413 - 49578535 AAGTGGTGCTTCATTTGCATTTCAGACACTGAAATCAGAGGGCAGATCTTTAAGAGGTTAATTTTGTGAGTGAGCCCTTAATGACAGAGGGACCAAGACTAGATTCTTTATGCCTTAGGCTGGGTTTGCAGTGGGTAGATGCGAAATATGCTGATAAGAGTAAAGCTCTTCTGGTGACTCTTCAGCCTCAGGCTCTTTTATGTGCAAGTGTCCTCTCCCCTCCGTCTCAGAGAACTCTCCGGGCTCCAGGACCCTGGAATCCCTTTCAGTGG---------GTTTGCAGAGGCAGGAAAGCAAATGCTTATCTCTTCCAA-TCACT---GCAAGACCTGGAGCTGA-AGTCCGG-----ACG-CC-TGGCAGC----TAAACCTCTTTACTGAGGATCTAAGATCCAAGAGGCAAAGCCCACTTCTTGGTCA-TTATAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178776377 355 + 195471971 AAGTGCTATTGCATTTGCATTTCAGACACTAAACTCAGAGGG-AGGGCTGGAAGAGGTTAATGTTGTGAGTGAGTGGTTAATGACCATGGG--TAAGACT---------------------------------GGCTGATGCATAGTACACTGATAGT------GCTCCTTTG--------------TCAGGCTATTCT-----CAAATGACCTTGACCCTCC-TCTCAGGGGGCTCACTGGACTCCAGCACCCCAAA--TCCTTGAAATGGATTCTGTCCATTTGTATGGATAGAAAAGCAAACTCTCACCTTCTAAAAGTCACTCACGTGAGACATGGGACAGACGGTCC-------ACA-TTATGGCAGCTATGTAGATCTGTGTACTGAGGGTCT----------AGGCCTAGACCACTTGCTG-TTA-CTGTAA i mm10.chr1 I 747 I 733 s canFam3.chr7 36345040 407 + 80974532 GAGTGGTGCTT-GTTTGTGTTTCAGACACTAAAATCAAAGGGCAG-TCCCTGAGAGGTTGATTCTGTGAGTGAGTCCTTAATAACAGAGGCACCCAGACTGGATTCTCTGTGCCTTAGGCTGGGTTTGCAGTTGGAAGATGTAAAGGATGCCGGAGAGATTAAAGATGCTCCCGTGACTCTTAAGCCTCATGCTGTT-TATCTGCAAACCTCCTCTACCTGCCATCTCAGAGGA------GGGCTCTCGT--CCTAGAATCCCTGGCAGCAGGTCCTGTGGATTTGTCTGGATGGGAAAGCAGATTCTTATCTCCTGCAAGTCACT---GCTGGGCACGGTACCAGTAGTCCAGCACCCACATTC-TGGCAGC----TAGG-ATCTTCACTGAGGATCT----------AGATAAAAGCCCTTTATTGATTG-TAAAA- i canFam3.chr7 C 0 C 0 a score=253789.000000 s hg38.chr1_KI270759v1_alt 183465 77 + 425601 ATGCGCTCATCATAAAGCAGTCCTTCTGGATTTCTGGCATTTTCTTGAATAAACTTATTGAAACACC--CTAAGGAGAA s panTro4.chr1 224935805 77 + 228333871 ATGCACTCATCATAAAGCAGTCCTTCTGGATTTCTGGCATTTTCTTGAATAAACTTATTGAAACACC--CTAAGGAGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226294628 77 - 229942017 ATGCACGCACTGTAAAGCAGTCCTTCTGGATTTCTGGCATTTTCTTGAATAAACTTATTGAAACACC--CTAAGGAGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140183934 77 - 143122389 ATGCACTCACCGTAAAGCAGTCCTTCTGGATTTCTGGCATTTTCTTGAATAAACTTATTGAAACACC--CTAAGGAGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16898807 77 - 229590362 ACATACTCATTAGAAAGCAGTCCTCCCGGATTTCTGGCATTTTCTTGAATAAACTTATGGAAACCCC--CTAAGGAGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223662113 77 - 227556264 ACATACTCATTAGAAAGCAGTCCTCCCGGATTTCTGGCATTTTCTTGAATAAACTTATGGAAACCCC--CTAAGGAGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16712475 77 - 220367699 ACATACTCATTAGAAAGCAGTCCTCCCGGATTTCTGGCATTTTCTTGAATAAACTTATGGAAACCCC--CTAAGGAGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82510818 77 + 85787240 ACATACTCATTAGAAAGCAGTCCTTCCGGATTTCTGGCATTTTCTTGAATAAACTTATGGAAACCCC--CTAAGGAGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14192245 77 - 49578535 ACGCACTCATCGTAGAGCAGTCCTTCTGGATTGCTGAGATTTTCTTGAACAAACTTACTGAAACACC--CTAAGGAGAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36345447 79 + 80974532 GCATGTCCATCACCAAGCAGTCCTTCCAAATTTCAGGCATCTTCTTGAACCAACTTATTGAAACACAAGCTAAGAGGGA i canFam3.chr7 C 0 C 0 e mm10.chr1 178776732 733 + 195471971 I a score=3450102.000000 s hg38.chr1_KI270759v1_alt 183542 1033 + 425601 CTCAGA-CATCCTTTTCAACCCTCAGGAGCGGATAAGAGGATGCAGCTTCATTTGTTAAA-TTGCAGTTGCATGTCAGT--------------TATGAATAAACATGGACTGGACTTCTGA-TGCTAATGTAGGAACGAT----------------------------------------------------------ATTTGTACCTCCTGGAAGTAACTCC------------------------------TATAGCTCGTTTTCTTT-----------------------------------------------------------------------------------------TAAAATTATGCAATCCACAGTCAAGTCCTGGGGTACAAGTCTAAGAGGCGTC-AGCCACACAAGAGGCTAAAGTGACTTTGGGGTAGTCTGCAAGTAT---CTCAACCTGTCATTTCT-CCAGACATTCAGATATAGTACATT--TTAAACACAGCACTGCCTTTTTCTTGAAATATTTAGTTTCAGTGTTAGCTAAGTTTGTGA--TTTTTTAATGCAGAAAAAATGATTTATTTTTAATTTCTGATTCCTCGTCGGGCTATGTA--TATGTAAAGTCCAGGGTTATGAGAAGGCAGAAGTAAACTTGCTGGGTAGAAGGCGTCATGGTATCATGTGATGTGGCTTAGATTAATATGGGCCAGAACACTTTCTCTTTAGACATTGCTAATG---TTATTCTTATTCTTCTACTATTCACaataatagctaacatttactgagtgcttacagtgtgcttggaac--tttgctgagaactttataccaattatc-----tgag---ttttacagaaacattttaaggtagatattgttaatatcccaatttgacagaaggaagaaacaggagttctgggcaggtaaggaacatgcccaa-gcattgctcactaataaatgactgagctgtgtgtaaacatagttctttccacgtccaaagcccatacttgtaa-ccactgcactgctgTTTGTAGATTTGTTCGACTCCTCAGAGCAGTAAGTCAGTTTCATCTTACTTGCC----------------TGGCCTCTCCATTGAGTATTGAACTTGGCAGGAAATAGTGTT----GGGAGTGATTTGTGATGTCTGAGATAGGTAGATCCAGTACAGAGGAATGTTGAAATTAGACTTACTAGTCCCATATTAGATTCTTCTCAGACTATCCACGAGAGACTTCTC s panTro4.chr1 224935882 1033 + 228333871 CTCAGA-CATCCTTTTCAACCCTCAGGAGCGGATAAGAGGGTGCAGCTTCATTTGTTAAA-TTGCAGTTGCATGTCAGT--------------TATGAATAAACATGGACTGGACTTCTGA-TGCTAATATAGGAACGAT----------------------------------------------------------ATTTGTACCTCCTGGAAGTAACTCC------------------------------TATAGCTCGTTTTCTTT-----------------------------------------------------------------------------------------TAAAATTATGCAATCCACAGTCAAGTCCTGGGGTACAAGTCTAAGAGGCGTC-AGCCACACAAGAGGCTAAAGTGACTTTGGGGTAGTCTGCAAGTAT---CTCAACCTGTCATTTCT-CCAGACATTCAGATATAGTACATT--TTAAACACAGCACTGCCTTTTTCTTGAAATATTTAGTTTCAGTGTTAGCTAAGTTTGTGA--TTTTTTAATGCAGAAAAAATGATTTATTTTTAATTTCCGATTCCTCGTCGGGCTATGTA--TATGTAAGGTCCAGGGTTATGAGAAGGCAGAAGTAAACTTGCTGGGGAGAAGGCGTCATGGTGTCATGTGATGTGGCCTAGATTAATATGGGCCAGAGCACTTTGTCTTTAGACATTGCTAATG---TTATTCTTATTCTTCTACTATTCACaataatagctaacatttactgagtgcttacactgtgcttggaac--tttgctgagaactttataccaattatc-----tgag---ttttacagaaacattttaaggtagatattgttaatatcccaatttgacagaaggaagaaacaggagttctgggcaggtaaggaacatgcccaa-gcattgctcactaataaatgactgagctgtgtgtaaacctagttctttccacgtccaaagcccatacttgtaa-ccactgcactgctgTTTGTAGATTTGTTCGACTCCTCAGAGCAGTAAGTCAGTTTCATCTTACTTGCC----------------TGGCCTCTCCATTGAGTATTGAACTTGGCAGGAAATAGTGTT----GGGAGTGATTTGTGATGTCTGAAATAGGTAGATCCAGTACAGAGGAATGTTGAAATTAGACTTACTATTCCCATATTAGATTCTTCTCAGACTATCCACGAGAGACTTCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226294705 1030 - 229942017 CTCAGA-CATCCTTTTCAACCCTCAGGAGCGGATAAGAGGATGCAGCTTCATTTGTTAAA-TTGCAGTTGCATGTCAGT--------------TATGAATAAACATGGACTGGACTTCTGA-TGCTAATATAGGAATGAT----------------------------------------------------------ATTTGTATCTCCTGGAAGTAAATCC------------------------------TATAGCTTGTTTTCTTT-----------------------------------------------------------------------------------------TAAAATTATGCAATCCACAGTCAAGTCCTGGGGTACAAGTCTAAGAGGCGTC-AGCCACACAAGAGGCTAAAGTGACTTTGGGGTAGTCTGCAAGTAT---CTCAGCCTGTCATTTCT-CCAGACATTCAGATATAGTACATT--TTAAACACAGCACTGCCTTTTT-TTGAAATATTTAGTTTTAGTGTTAGCTAAGTTTGTGA--TTTTTTAATGCAGAAAAAATGATTTATTGTTAATTTCCGATTCCTCGTCGGGCTACGTA--TATGTGAAGTCCGGGGCTATGAGACGGCAGAAGTAAACTTGCTGGGTAGAAGGCGTCATGGTATCATGTGATGTGGCTTAGGTTAATATGGGCCAGAACACTTTCTCTTTAGACATTGCTAATG---TTATTCTTATTCTTCTACTATTCataataatagctaccatttactgagtgcttatagtatgcttgggac--tttgctgagaactttataccaattatc-----tgag---ttttacagaaacattttgaggtagatattgttaatatcccaatttgacagaaggaagaaacag--gttctgggcaggtaaggaacatgcccag-gcattgctcactaataaatgactgagctgtgtgtaaacctagttctttccacatccaaagcccacacttgtaa-ccactgcactgcCTTTTGTAGATTTGTTTGACTCCTCAGAACAGTAAGTCAGTTTCATCTTACTTGCC----------------TAGCCTCTCCGTTGAGTATTGAACTTGGCGGGAAATAGTGTT----GGGAGTGATTTGTGATACCTGAGATAGGTAGATCCAGTACAGAGGAATGTTGAAATTAGACTTACTATTCCCATATTAGATTCTTCTCAAACTGTCCACGAGAGACTTCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140184011 1015 - 143122389 CTCAGA-CATCCTTGTCAACCCTCAGGAGTGGATAAGAGGATGCAGCTTCATTTGTTAAA-TTGCAGTTGCATGTCAAT--------------TATGAATAAACATGGACTGGACTTCTGA-TGCTAATATAGGAACGAT----------------------------------------------------------ATTTGTATCTCCTGGAAGTAAATCC------------------------------TATAGCTCGTTTTCTTT-----------------------------------------------------------------------------------------TAAAATTATGCAATCCACAGTCAAGTCCTGGGGTAGAAGTCTAAGAGGCGTC-AGCCACACAAGAGGCTAAAGTGACTTTGGGACAGTCTGCCAGTAT---CTCAACCTGTCATTTCT-CCAGACATTCAGATATAGTACATT--TCAAACACAGCACTGCCTTTCTCTTGAAATATTTAGTTTTAGTGTTAGCTAAGTTTGCGA--TTTTTTAATGCAGAAAAAAGGATTTATTTTTAATTTCTGATTCCTCGTAGGGCTATGTA--TATGTAATGTCCAGGGTTATGAGAAGGCAGAAGTAAACTTGCTGGGTAGAAGGTGTCACGGTATCATGTGATGTGGCTTAGGTTAACATGGGCTGGAACACTTTCTCTTTAGACATTGCTGATG---------TTATTCTTCTACTATTCataataatggctaacatttactgagtgcttacagtgtgcttgggac--tttgctgagaactttataccaattatc-----tgag---ttttacagaaacattttgaggtagatattgttaatatcccagtttgacagaaggaagaaacagg----------aggtaaggaacatgcccaa-gcattgccccctaataaatgactgagctgtgtgtaaacctcgttctttccacatccaaagcccatacttgtaa-ccactgcactgctgcTTGTAGATTTGTTCGACTCCTCAGAACAGTAAGTCAGTTTCATCTTACTTGCC----------------TGGCCTCTCCATTGAGTATTGAACTTGGCAGGAAATAGTGTT----GGGAGTGATTTGTGATATCTGAGATAGGTAGATCCAGTACAGAGGAATGTTGAAATTAGACTTACTATTCACATATCAGATTTTTCT--GACTGTCCACAAGAGACTTCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16898884 1036 - 229590362 CTCAGA-CATCCTTTTCAATCCTCAGGAGCAGATAAGAGGATGCAGTTTCATTTCTGAAATTTGCAGTTGCGTGTCAGT--------------TATGAATAAACACGGACTGGACTTCTGA-TGCTAGTATAGGAACAAT----------------------------------------------------------ATTTGTATCTCCTGGAAGTAAATCC------------------------------TATAGCTCGTTTTCTTT-----------------------------------------------------------------------------------------TAAAATTGTGCAATCCACAGTCAAGTCCTGGGGTAGAAGTCTAAGAGGTGTC-AGCTACAC--GAGGCTGAAGTGACTTTGGGATAGTCTGCAAGTAT---CTCAACCTGTCATTTTT-CCAGACATTCAGATATAGAACATT--TTAAATACAGCACTGCCTTTTTCTTGAAATATTTAGTTTTCGTGTTAGCTAAGTTTGTGA-TTTTTTTAATGCAGAAAAAAGGATTTATTTTTAATTTCTGATTCCTCGTAGGGCTATGTA--TATGTAAAGTCCAGGGTTATGAGAAGGCAGAAGTAAACTTGCTGGGTAGAAGGCGTCATGGTATCATGTGATGTGGCTTAGGTTAATATGGACCAGAACACTTTCTCTTTAGACGTTGCTGATG---TTATTCTTATTCTTCTACTATTCataataatagctaacactgactgagtgcttacagagtgcttggaac--tttgctaagaactttataccggttatctcatttgag---ttttacagaaacattttgaggtagatattgttaatatcccaatttgacagaaggaagaaacagaggctctgggcaggtaaggaacatgcccag-gcatcactccctaataaatgactgagctgtgtgtgaacctagttctttc--cgtccaaagcccatacttgtaa-ccactgcactgctgTTTGTAGATTTGTTCGACTCCTCGGAACAGTAAGTCAGTTTCATCTTACTTGCC----------------TGGCCTCTCCCTTGAGTATTGAACTTGGCAGGAAATAGTGTT----GGGAGTGATCTGTGATATCTGAGATAGGTAGATCCAGTACAGAAGAATGTTGAAACTAGACTTACTATTCCCATATTAGATTCTTCTCAGACTGTCCACGAGAGACTTCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223662190 1036 - 227556264 CTCAGA-CATCCTTTTCAATCCTCAGGAGCAGATAAGAGGATGCAGTTTCATTTCTGAAATTTGCAGTTGCGTGTCAGT--------------TATGAATAAACACGGACTGGACTTCTGA-TGCTAGTATAGGAACAAT----------------------------------------------------------ATTTGTATCTCCTGGAAGTAAATCC------------------------------TATAGCTCGTTTTCTTT-----------------------------------------------------------------------------------------TAAAATTGTGCAATCCACAGTCAAGTCCTGGGGTAGAAGTCTAAGAGGTGTC-AGCTACAC--GAGGCTGAAGTGACTTTGGGATAGTCTGCAAGTAT---CTCAACCTGTCATTTTT-CCAGACATTCAGATATAGAACATT--TTAAATACAGCACTGCCTTTTTCTTGAAATATTTAGTTTTCGTGTTAGCTAAGTTTGTGA-TTTTTTTAATGCAGAAAAAAGGATTTATTTTTAATTTCTGATTCCTCGTAGGGCTATGTA--TATGTAAAGTCCAGGGTTATGAGAAGGCAGAAGTAAACTTGCTGGGTAGAAGGCGTCATGGTATCATGTGATGTGGCTTAGGTTAATATGGGCCAGAACACTTTCTCTTTAGACGTTGCTGATG---TTATTCTTATTCTTCTACTATTCataataatagctaacactgactgagtgcttacagagtgcttggaac--tttgctaagaactttataccggttatctcatttgag---ttttacagaaacattttgaggtagatattgttaatatcccaatttgacagaaggaagaaacagaggctctgggcaggtaaggaacatgcccag-gcatcactccctaataaatgactgagctgtgtgtgaacctagttctttc--cgtccaaagcccatacttgtaa-ccactgcactgcTGTTTGTAGATTTGTTCGACTCCTCGGAACAGTAAGTCAGTTTCATCTTACTTGCC----------------TGGCCTCTCCCTTGAGTATTGAACTTGGCAGGAAATAGTGTT----GGGAGTGATCTGTGATGTCTGAGATAGGTAGATCCAGTACAGAAGAATGTTGAAACTAGACTTACTATTCCCATATTAGATTCTTCTCAGACTGTCCACGAGAGACTTCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16712552 1037 - 220367699 CTCAGA-CATCCTTTTCAACCCTTAGGAGCAGATAAGAGGATGCagtttcatttctgaaatttgcAGTTGCGTGTCAGT--------------TATGAATAAACACGGACTGAACTTCTGA-TGCTAGTATAGGAACAAT----------------------------------------------------------ATTTGTATCTCCTGGAAGTAAATCC------------------------------TATAGCTCGTTTTCTGT-----------------------------------------------------------------------------------------TAAAATTGTGCAATCCACAGTCAAGTCCTGGGGTAGAAGTCTAAGAGGTGTC-AGCTACAC--GAGGCTGAAGTGACTTTGGGATAGTCTGCAAGTAT---CTCAACCTGTCATTTTT-CCAGACAttcagatatagaacatt--ttaaatacagcactgcctttttcttgaaatatttagtTTTCGTGTTAGCtaagtttgtgattttttttaatgcagaaaaaaggatttatttttaatttctgattccTCGTAGGGCTATGTA--TGTGTAAAGTCCAGGGTTATGAGAAGGCAGAAGTAAACTTGCTGGGTAGAAGGCGTCATGGTATCATGTGATGTGGCTTAGGTTAATATGGGCCAGAACACTTTCTCTTTAGACGTTGCTAATG---TTATTCTTATTCTTCTACTAttcataataatagctaacactgaCTGAGTGCTTACAGAGTGCTTGGAAC--TTTGCTAAGAACTTTATACCAGTTATCTCATTTGag---ttttacagaaacattttGAGGTAGATATTGTTAATATCCCAATTTGAcagaaggaagaaacagaggctctGGGCAGGTAAGGAACATGCCCAG-GCATCACTCCCTAATAAATGACTGTGCTGTGTGTGAACCTAGTTCTTTC--CGTCCAAAGCCCATACTTGTAA-CCACTGCACTGCTGTTTGTGGATTTGTTCGACTCCTCGGAACAGTAAGTCAGTTTCATCTTACTTGTC----------------TGGCCTCTCCCTTGAGTATTGAACTTGGCAGGAAGTAGTGTT----GGGAGTGATCTGTGATATCTGAGATAGGTAGATCCAGTACAGAAGAATGTTGAAACTAGACTTACTATTCCCATATTAGATTCTTCTCAGACTGTCCACGAGAGACTTCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82510895 1036 + 85787240 CTCAGA-CATCCTTTTCAACCCTCAGGAGCAGATAAGAGGATGCAGTTTCATTTCTGAAATTTGCAGTTGCGTGTCAGT--------------TATGAATAAACACGGACTGGACTTCTGA-TGCTAGTATAGGAACAAT----------------------------------------------------------ATTTGTATCTCCTGGAAGTAAATCC------------------------------TATAGCTCGTTTTCTTT-----------------------------------------------------------------------------------------TAAAATTGTGCAATCCACAGTCAAGTTCTGGGGTAGAAGTCTAAGAGGTGTC-AGCTACAC--GAGGCTGAAGTGACTTTGGGATAGTCTGCAACTAT---CTCAACCTGTCATTTTT-CCAGACATTCAGATATAGAACATT--TTAAATACAGCACTGCCTTTTTCTTGAAATATTTAGTTTTCGTGTTAGCTAAGTTTGTGA-TTTTTTTAATGCAGAAAAAAGGATTTATTTTTAATTTCTGATTCCTCGTAGGGCTATGTA--TATGTAAAGTCCAGGGTTATGAGAAGGCAGAAGTAAACTTGCTGGGTAGAAGGCGTCATGGTATCATGTGATGTGGCTTAGGTTAATATGGGCCAGAACACTTTCTCTTTAGACATTGCTAATG---TTATTCTTCTTCTTCTACTATTCATGataatagctaacgttgactgagtgcttacagagtgcttggaac--tttcctaagaactttataccggttatctcatttgag---ttttacagaaacattttgaggtagatgttgttaatatcccaatttgacagaaggaagaaacagaggctctgggcaggtaaggaacatgcccag-gcatcactccctaataaatggctgagctgtgtgtgaacctagttctttc--cgtccaaagcccatacttgtaa-ccactgcactgcTGTTTGTGGATTTGTTCGACTCCTCGGAAGAGTAAGTCAGTTTCATCTTACTTGCC----------------TGGCCTCTCCCTTGAGTATTGAACTTGGCAGGAAATAGTGTT----GGGAGTGATCTGTGATATCTGAGATAGGTAGATCCAGTACAGAAGAATGTTGAAACTAGACTTACTATTCCCATATTAGATTCTTCTCAGACTGTCCACGAGAGACTTCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14192322 1030 - 49578535 CCCAGACCATCCTTTTCAACCCTCAGGAGCAGATAAGAGGATGGAGCTTCATTTGTTAAA-TTGCAGTTGCATGTCAGT--------------TACAAATAAACATGGACTGGACTTATGA-GGCTAATACAGGGACGAG----------------------------------------------------------ATCTGTATCTCCTGGAAGTAAATCC------------------------------TATGGCTTGTTTTCTTT-----------------------------------------------------------------------------------------TAAAATTATGCAAAGCACAGTCAAGTCCTAGGGTACAAATCTAAGAGGTATCAAGCCACACAATAGGCTAAAGTGACTTTGTGATAGTCTGCGAGTAT---CT-GACCTGCCATTTTT-CAAGACGCTCAGATATAGTACATT--TTAAACACAGCACTGCCTTTTTCTTGAAATATTTAGTTTTAGTGTTAGCTATGGTTGTGA--TTTTTTAATGCCGAAAAAAGGATTTACTTATAATTTCTGATTCCTCATTGGGATATGCG--TATGTAAAGTCCAGGGTTACGAGAAGAAAGAAGTAGG-TTGCTGGGTA-CAGTTGTCCTGGGATCATGTGGCGTGGCCTAGCTCAGCATCTGCCAGAACACTTTCTCCT-----ATTTCTAATAAGAATATTCTTATTCTTCTGCTATTCATaataatagctaacacttgttgagtgcttccactgtgcctggaaa--tttgctaagaacgttatactgattatctcatttgat---ttttacggaaacattttggggtagatattgttagtatcccagtttcacagaaggaagaaatggaggctctgggcggttaagtaacatgcccaa-gcatagctcatgaataaatggctgagctgggtgtgaacctagttctttctgtgtccgaagcccatacttgtag-ctgctgcactgCTGTTTGTAGATCTGTCTGACTCCTCAGAACAGTAGGTCAGTATCATGCCACTTGCC----------------TGGCCTCTAACTTGAGTATTGAGCTTGGTAGGAAGCAGTGCT----GTGAGTGATTTGTGATATCTACGATAGGTAGATCCAGTACATAGGAATGATGAAACTAGACTCCCTATTC-----TCAGATTATTCTCAGACTATCCATGAGAGACTTCTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178777465 884 + 195471971 cTCCTG-CATCCGTTTTAAACCCGAGT--------------TGTAGCAACATTGTTGAAA-TTGCAGGTACATGCAA----------------CATAAATAAACATGGGCTGGACTCATGA-AGCAAGTAAAGGAG-AGT----------------------------------------------------------CCTTGGATCTCATGGACTTGACACC-----------------------------ATAT------TATCCATT-----------------------------------------------------------------------------------------CAAACTTGTAAGATTCGTGATCAAACTCTGGGGTAAAAACCTAAGAGTGCCA-AACTATGTACCAGGCTACAGTGATCTTGAGATGTCCTGCAAGTGTGAGCTCAGCCTTTTCTTCTTGAAAGAAGGTCAGATTTGGTGTAGT--TCAGACATAGCACTGCCTGTCCC--------------------------------AGAGA--CTTT----------------------------------------------AGTTGTACA--TATGTGAAGTCTAAGGAGATCAGCAG-CAAAAG-------GCTGGGCAGAAGG-GTCAGGATATAA--GAGTGTGGCTTAGTTCAAC-TGTACCGGAA----------------GTCTGAGATG---ATACACATATTCTTCTACTACTACTCATAATAGCTAAGGATTACTGAGTGTGCGGAACACGCCCAGCACCTTTTCCTAAAAACTTCATCCGAATTATCTCGTGTAAATTTTTTTCCAGCCACATTTTAAG---------GTTAATCTGCACTTTTAG---------------------------AGCCAAGTACCATGCTCAGAGCA--GCTCACTAATAAATGCCTAAGCTGTGCGCGAGACTTTCTCTCTC-----------TCTCTGTTTGTACTCTACCATACTGCTCTGTGCCTGTTTGCTTCATGGTCGGGAATGATAAATCAGTCTCA-CTTCCTTGCCTCCTACAATCAGCTCTTGGCCTGTAATCTGAGAGATGGAGTTGGTAGGAAATCATGAT----GTGAATTAGTTACGGTACATGCAGTAGGCAGAGCCAGTATGAAGGAATG--AAAACAGGACTTAGCAGTCCCATATCAGCTTATCCTCATTCTGTCCAC-AGGGACTCCTC i mm10.chr1 I 733 I 14 s canFam3.chr7 36345526 1222 + 80974532 -CCAGTTCTTGCTTTTTGACCCTCAGGAGCAGACAAGAGAAAGCAA---CATTTGCTAAA-TTGCAATTATGTGTCAATTTGTGACATGGTTATAGAAATAACTGGGAATTGGACTCACGAGCACATGTATAGGAAAGATATCCCTgggacaccttggtggctcagtggttgagagtctgcctttggcttaggttgtgatctgggggtcctgggattgagtcctgcatcaggcagtctgcttctccctatgtctgtgtctcttcctctctctctgtgtctcacatgaataaatgcataaaatatttaaaatcaatcaatcaatcaatcaatcCCCATCCCATGGAAGCAAGTCTGATGGTAAAATTACACAATCTGTGACCAAGTTCTGGGGTAGAAATCTAAGAGGTATTGAGGCACACGATGAGCTGAACTGACTCTGGGATAGCCTGCAAACATGATCTCAGCCTGTCATTGTC-TGAGACAGTCAGATTCGGGACATCTGTTAAACACAGTGCTGTGTCCCTCTTGAAAGATTTAATTTTAGTGTTTGCCAAGTTTGCAA--TC-------------AAAA-----TATTTCCCACTTTCAATTCCTCTTT-GGTTATGCATGTATATAATGTCCAGACGTATCAGGAGGAAGAAGCAAACTTGCTGTTCTGAGGATG-CATAGTATAACACCACCTGGGTTAGTATAATAACGACCAGAAC----TCTCTTTGGACACTGATGATG---ATAT--TTGTTATTCTGTTACAACTaataatagctaacattcattgagcactttcaatgtgcctggtgc--tttgctaagaactgtatactaattaacttgtttaat---tatcacaaaaacattttgaggtagatactgttaatatctcagttttaaagaaggaggagatagagggtcaggaaggttaagaaacatgagcaa-gaacagcttgctgatcaatgattgagccacgtgtcaacctcattcgtcc------agaggcccatac-tgtag-taactatactgctttacGTAGAATTGCTTGACTAATTGGAATAGTAAGTCAGTTTCAGCTGACTTGCCCACTATAATCAAACCTTGACTTCTACCTCGGGTCCTGAACATGGCAGGAAACAGAGCTGTCAGTGACTGATTTGTCATATCTACAGCGGGTAGATCCAGGACAGAGGAGAGATGAAACTAGAGTTGCCATTCCCATATTAGATTATCCTCAAACTACACCCGAGGGGCTTCTA i canFam3.chr7 C 0 C 0 a score=85475.000000 s hg38.chr1_KI270759v1_alt 184575 25 + 425601 CATGGACCCAATACCAACCAAGCTT s panTro4.chr1 224936915 25 + 228333871 CATGGACCCAATACCAACCAAGCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226295735 25 - 229942017 CATGGACCCGATACCAACCAGGCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140185026 25 - 143122389 CATGGACCCAATACCAACCAGGCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16899920 25 - 229590362 CATGGACCCCATACCAATCAGGCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223663226 25 - 227556264 CATGGACCCCATACCAATCAGGCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16713589 25 - 220367699 CATGGACCCCATACCAATCAGGCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82511931 25 + 85787240 CATGGACCCCATACCAATCAGGCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14193352 25 - 49578535 CATGGACCCCATGCCATCCAGGCTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36346748 25 + 80974532 TGTGGACCACATGGCACCCAGGCTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178778349 14 + 195471971 I a score=32032.000000 s hg38.chr1_KI270759v1_alt 184600 10 + 425601 CTGTAGAACA s panTro4.chr1 224936940 10 + 228333871 CTGTAGAACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226295760 10 - 229942017 CTGTAGAACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140185051 10 - 143122389 CCGTAGAACa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16899945 10 - 229590362 CTGTAGAACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223663251 10 - 227556264 CTGTAGAACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16713614 10 - 220367699 CTGTagaaca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82511956 10 + 85787240 CTGTAGAACA i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36346773 10 + 80974532 CTATAGAACA i canFam3.chr7 C 0 C 0 e mm10.chr1 178778349 14 + 195471971 I e calJac3.chr19 14193377 0 - 49578535 C a score=370826.000000 s hg38.chr1_KI270759v1_alt 184610 179 + 425601 -------------ttttttttttttttttttttttttgagacagagtcttgctctgtca-ccaggctggagtgcagtggcgcgatctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcctcttgagtacctgggactacaggcgcacaccaccacgtccagctaattttttg s panTro4.chr1 224936950 176 + 228333871 ----------------tttttttttttttttttttttgagacagagtcttgctctgtca-ccaggctggagtgcagtggcgcgatctcggctcactgcaacctccgcctccggggttcaagtgattctcctgcctcagcctcttgagtagttgggactacaggtgcacaccaccacgtccagctaattttttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226295770 189 - 229942017 t---tttctttttttttttttttttttttttttttttgagacagagccttgctctgtca-ccaggctggagtgcagtggtatgatctcggctcactgcaacctttgcctcccgggttcaagtgattctcctgcctcagcctcttgagtagctgggactacaggcgtacgccaccgtgccaagctaattttttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140185061 192 - 143122389 tatatatatatatatatatatatttttttttttttttgagacagagtcttgctctgtca-ccaggctggagtgcagtggcacgatctcggctcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcctcttgagtagctgggactacaggtgcacgccaccatgcccagctaattttttg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16899955 181 - 229590362 AAttc------------ttttttttttttttttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcaacctcccgagtagctggtactacaggtgcccgccaccatgcccggctaattttttg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223663261 183 - 227556264 AAttc----------ttttttttttttttttttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcaacctcccgagtagctggtactacaggtgcccgccaccatgcccggctaattttttg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16713624 183 - 220367699 aattc---------tttttttttttttttttttttttgagacagagtctcgccctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgtcattctcctgcctcagcctcccgagtagctggtactacaggcg-ctgccactacgcccggctaattttttg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82511966 175 + 85787240 AAttc----------------tttttttttgttttttgagatggagtctcgctctgtcgcccaggctggagtg-agtggcgcaatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcg-ccgccaccacccccggctaattttttg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178778349 14 + 195471971 I e canFam3.chr7 36346783 0 + 80974532 C e calJac3.chr19 14193377 0 - 49578535 C a score=264373.000000 s hg38.chr1_KI270759v1_alt 184789 124 + 425601 tatttttactagagacagggtttcaccatgttggctgggatggtctcgatctcctgacctcgtgatccacccacctcagccacccaaagtgctggaattacaggcgtgagccaccgcacctggc s panTro4.chr1 224937126 124 + 228333871 tatttttactagagacagggtttcaccatgttggctgggatggtctcgatctcctaacctcgtgatccacccacctcagccacccgaagtgctggaattacaggtgtgagccactgcacctggc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226295959 124 - 229942017 tatttttagtagagacagggtttcaccatgttggctgggatggtctcgatctcctgacctcgtgatccacccacctcagccacccaaagtgttggaattacaggcgtgagccaccgcgcccagc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140185253 123 - 143122389 ta-ttttattagagatagggtttcaccatgttggctgggatggtctcgatctcctgacctcgtgatccacccacctcagccacccaaggtgctggaatcacaggcgtgagccactgcgcccggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16900136 124 - 229590362 tatttttagtagagatggggtttcaccatgttggccagggtggtctcgatctcctgacctcatgatccacccgtctcagccaccccaagtgctgggattacaggcgtgagccaccgcgcccggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223663444 124 - 227556264 tatttttagtagagatggggtttcaccatgttggccagggtggtcttgatctcctgacctcatgatccacccgtctcagccaccccaagtggtgggattacaggcgtgagccaccgcgcccggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16713807 124 - 220367699 tatttttagtagagatggggtttcaccatgttggccagggtggtctcgatctcctgacctcatgatccacctgtctcagccaccccaagtgctgggattacaggcgtgcgccaccatgcccggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82512141 124 + 85787240 tatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctcctgacctcgtgatccacctgcctcagccacccaaagtgctgggattacaggcgtgagccaccatgcccggc i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36346783 18 + 80974532 CATTTTTATTA---------------------------------------------------------------------------------------CACAGGC------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178778349 14 + 195471971 I e calJac3.chr19 14193377 0 - 49578535 C a score=649173.000000 s hg38.chr1_KI270759v1_alt 184913 179 + 425601 cTGTAGAACACATTTTTATTATGCAGTCCATGTTCATATGTCTAGCCTGTCAGTGGGTTACTTGTT-AATAAAAAGCAG-CCGTTTCATATTAGTGTCTCATTGAAAGCAGTGCCTGTTTTCCAT-TCATTCTAC-CTTGGATTTGTTTTCTTCCTCAATACTGAATTCTTAGAAAATGATAT s panTro4.chr1 224937250 179 + 228333871 cTGTAGAACACATTTTTATTATGCAGTCCATGTTCATATGTCTAGCCTGTCAGTGGGCTACTTGTT-AATAAAAAGCAG-CCGTTTCATATTAGTGTCTCATTGAAAGCAGTGCCTGTTTTCCAT-TCATTCTAC-CTTGGATTTGTTTTCTTCCTCAATACTGAATTCTTAGAAAACGATAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226296083 179 - 229942017 cTGTAGAACACATTTTGATTATGCAGTCCATGTTCATATGTCTATCCTGTCAGTGGGCTACTTGTT-AATAAAAAGCAG-CCGTTTCATATTCGTGTTTCATCGAAAGCAGTGCCTGTTTTCTAT-TCATTCTAC-CTTGGATTTGTTTTCTTCCTCAATACTGAATTCTTAGAAAATGATAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140185376 179 - 143122389 cTGTAGAACACGTTTTTATTACACAGTCCATGTTCATATGTCTAGCCTGTCGGTGGGCTACTTGTT-AATAAAAAGCAG-CCGTTTCATATTGGTGTCTCATCGAAAGCAGTGCCTGTTTTCCAT-TCATTGTAC-CTTGGATTTGTTTTCTTCCTCAATACTGAATTCTTAGAAAATGGTAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16900260 180 - 229590362 cTGTAGAACACATTTTTATTACGTAGTCCATGTTCATATGTTTAGCCTGTCAGTAGGCTACTTGTTAAATAAAAAGCAG-CTGTTTCATATTAGTGTCTCACCGAAAGCAGTGCCTGTTTTCCAT-TCATTCTAC-CTTGGATTTGTTTTCTTCCTCAATACTGAATTCTTAGAAAGTGATAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223663568 180 - 227556264 cTGTAGAACACATTTTTATTACGTAGTCCATGTTCATATGTTTAGCCTGTCAGTAGGCTACTTGTTAAATAAAAAGCAG-CTGTTTCATATTAGTGTCTCACCGAAAGCAGTGCCTGTTTTCCAT-TCATTCTAC-CTTGGATTTGTTTTCTTCCTCAATACTGAATTCTTAGAAAATGATAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16713931 179 - 220367699 ctgtagaACACATTTTTAGTACGCAGTCCATGTTCATATGTTTAGCCTGTCAGTGGGCTACTTGTT-AATAAAAAGCAG-CTGTTTCATATTAGTGTCTCACCAAAAGCAGTGCCTGTTTTCCAT-TCATTCTAC-CTtggatttgttttcttcctcaatACTGAATTCTTAGAAAATGATAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82512265 179 + 85787240 cTGTAGAACACATTTTTATTACGCAGTCCGTGTTCATATGTTTAGCCTGTCAGTGGGCTACTTGTT-AATAAAAAGCAG-CTGTTTCCTATTAGTGTCTCACCGAAAGCAGTGCCTGTTTTCCAT-TCATTCTAC-CTTGGATTTGTTTTCTTCCTCAATACTGAATTCTTAGAAAATGATAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14193377 150 - 49578535 CTGTAGAACACATGTTTATCACACAGTCTGTGTTCGTATGTCTAGCCTGTCAGCCAGCTACTTGCT-AATAAAA------------------------------ACAGCTGTGTCTATTCTCCAT-TCATTCTGC-CTTGGATTTGCTTCCTTCCTCAATACTGAATGCCTAGAAAATGATAT i calJac3.chr19 C 0 I 302 s mm10.chr1 178778363 178 + 195471971 CCATAGGACCTATTTTTATTAC-TAGGCCATATTTGTATTTCTAGCCTGTCAGTGGGCTACTAGTT-AATAAAAAGCAGACTGTTTCATATTAGAGTCTTATCAAAAGCAGCACCTGTCATCCAT-CAGTCCCAC-TTT-CAGAGGTTTTCTTTGTCAATATTGAGTCCTTAGAAGATGACAT i mm10.chr1 I 14 C 0 s canFam3.chr7 36346801 154 + 80974532 ----------------------------CATATTTGTATGTCTCACCTGTCAGTGGGCCATGTACC-AATAAAAAGTAGGCAGTTTCATATTGGTGTCTTATCGAAAGCAGTGCCCATTTTCCCCAGAATTCTACTCTTAGGTTTGTTTTCTTCCTCAACATGGAATCCTTGGGAAATGTTAT i canFam3.chr7 C 0 C 0 a score=312879.000000 s hg38.chr1_KI270759v1_alt 185092 80 + 425601 GTATGTTGAAAAATACTTGAGAATACCTGAGAACGGTTCTCTGTTGCATTTATTGCTGTATGTGAACCTGTCTATCAAGA s panTro4.chr1 224937429 80 + 228333871 GTATGTTGAAAAATACTTGAGAATACCTGAGAACGGTTCTCTGTTGCATTTATTGCTATATGTGAACCTTTCTATCAAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226296262 80 - 229942017 GTATGTTGAAAAATACTTGAGAATACCTGAGAACGGTTCTCTGTTGCATTTATTGCTGTATGTGAACCTTTCTATCAAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140185555 80 - 143122389 GTATGTTGAAAAATACTTGAGAATACCTGAGAACGGTTTTCTGTTGCATTTATTGCTGTATGTGAACCTGTCTATCAAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16900440 80 - 229590362 GTATGTTGAAAAATACTTGAGAATACCTGATAACGGTTTTCTGTTGCATTTATTGCTGTATGTGAACCTTTCTATCAGGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223663748 80 - 227556264 GTATGTTGAAAAATACTTGAGAATACCTGATAACGGTTTTCTGTTGCATTTATTGCTGTATGTGAACCTTTCTATCAGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16714110 80 - 220367699 GTATGTTGAAAAATACTTGAGAATACCTGATAACGGTTTTCTGTTGCATTTATTGCTGTATGTGAACCTTTCTATCAGGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82512444 80 + 85787240 GTATGTCGAAAAATACTTGAGAATACCTGATAACGGTTTTCTGTTGCATTTATTGCTGTATGTGAACCTTTCTATCAGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14193829 80 - 49578535 GTACATTGAGAAATATTTGAGAATACCTGTGAACAGTTTTCTGTTGCATATACTGCTGTCTGTGAACCTTTTAATCAAGA i calJac3.chr19 I 302 C 0 s mm10.chr1 178778541 80 + 195471971 ATGTGATGAGAAAGATTTGAGAATACACGAGAAGTATTGTCTGCTGCGTTTATCGTGGTAAGTAAACCTTTGTGTTAAGA i mm10.chr1 C 0 I 387 s canFam3.chr7 36346955 68 + 80974532 GTCTGATGAAAAATATTTGAGACAATCTGAGAGTG------------ATTTATTGCTGTATGTGAACCTTTCTATCAAGA i canFam3.chr7 C 0 C 0 a score=1092848.000000 s hg38.chr1_KI270759v1_alt 185172 327 + 425601 ATCCCAGGTGTTTTGTGATTTCCGTGTTTGTGAAATACAT---TAACTCTCCTTATGGTTGGAGAAATCAAAACAGTGCAGGTAAATGGTG-TTTTGAAATATCTGTAATAGTAGC----GAATAAGTCAGAGCCTCACAGTGCTTCATTTTTTAATGGAAAATTTGAACACATACCCACCTCTTCAGTACTGAAGAA-TTTTTTCCTGTTTGATTTTGTTGCTGAGATTGGAGTTTGTCCCATGAGAAATCACTGAACAGATTTAATTTTGTTTATTC-----TTTTTTTTTTAAGACAGCATATTTGTTCTCTACCAATATCATCC-AAAGAATGAAATG s panTro4.chr1 224937509 327 + 228333871 ATCCCAGGTGTTTTGTGATTTCCGTGTGTGTGAAATACAT---TAACTCTCCTTATGGTTGGAGAAATCAAAACAGTGCAGGTAAATGGTG-TTTTGAAATACCCGTAATAGTAGC----GAATAAATCAGAGCCTCACAATGCTTCATTTTTTTATGGAAAATTTGAACACATACCCACCTCTTCAGTGTTGAAGAA-TTTTTTCCTGTTTGATTTTGTTGCTGAGATTGGAGTTTGTCCCATGAGAAATCACTGAACAGATTTAATTTTGTTTATTC-----TTTTTTTTTTAAGACAGCATATTTGTTCTCTACCAATATTATAC-AAAGAATGAAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226296342 322 - 229942017 ATCTCAGGTGTTTTGTGATTTCCGTGTTTGTGAAATACAT---TAACTCTCCTTATGGTTGGAGAAATCAAAACAGTGCAGGTAAATGGTG-TTTTGAAATATCCGTAATAGTAGT----GAATAAGTCAGAGCCTCACAATGCTTCATTTTTTTATGGAAAATTTGAACACATACCCACCTCTTCAGTACTGAAGAA-TTTTTTCCAGTTTGATTTTGTTGATGAGATTGGAGTTTGTCCCATAAGTAATCACTGAACAGATTTAATTTTATT----------CTTTTTTTTTAAGAGAGCATATTTGTTCTCTACCAATATTATCC-AAAGAATGAAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140185635 325 - 143122389 ATCCCAGGTGTTTTGTGATTTCCGTGTTTGTGAAATACAT---TAACTCTCCTTATGGTTGGAGAAATCAAAACAGTGCAGGTAAATGGTG-TTTTGAAATATCCGTAATAGTAGC----AAGTAAGTCAGAGCCTCACAATGCTTCATTTTCTTATGGAAAATTTGAACACATACCCACCTCTTCAGTACCGAAGAA-TCTTTTCCTGTTTGATTTGGTTGCTGAGATTGGAGTTTGTCCCATGAGAAATCACCGAACAGATTTAATTTTGTTTAT-------TCTTTTTTTTAAGACAGCATATTTGCTCTCTACCAATATTATCC-AAAGAATGAAATG i nomLeu3.chr5 C 0 I 306 s rheMac3.chr1 16900520 308 - 229590362 ATCCCAGGTGTTTTGTGATTTCTGTATTTGTGAAATACAT---TAACTCTCCTTATGGTTGGAGAAACCAAAACAGTGCAGGTAAATGGTG-TTTTGAAATATCCATAATAGTAGT----GAATAAGTCACATCCTCACAATGCTTCATTTTTT-ATGGAAAATTTGAACACATACCCACCTCTTCAGTACTGAAGAA-TTTTTTCCTCTTTGATTTTGTTGCTGAGATTGGAGTTTGTCCCATGAGAAATCACTGAGCAGA-TTAATTTTTT----------------------AGACAGCATATTTGTTCTCTACCAATATTATCA-AAAGAATGAAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223663828 309 - 227556264 ATCCCAGGTGTTTTGTGATTTCTGTATTTGTGAAATACAT---TAACTCTCCTTATGGTTGGAGAAACCAAAACAGTGCAGGTAAATGGTG-TTTTGAAATATCCATAATAGTAGT----GAATAAGTCACATCCTCACAATGCTTCATTTTTT-ATGGAAAATTTGAACACATACCCACCTCTTCAGTACTGAAGAA-TTTTTTCCTCTTTGATTTTGTTGCTGAGATTGGAGTTTGTCCCATGAGAAATCACTGAGCAGATTTAATTTTTT----------------------AGACAGCATATTTGTTCTCTACCAATATTATCA-AAAGAATGAAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16714190 309 - 220367699 ATCCCAGGTGTTCTGTGATTTCTGTATTTGTGAAATACAT---TAACTCTACTTATGGTTGGAGAAACCAAAACAGTGCAGGTAAATGGTG-TTTTGAAATATCCATAatagtagt----gaataagtcacaTCCTCACAATGCTTCATTTTTT-ATGGAAAATTTGAACACATACCCACCTCTTCAGTACTGAagaa-ttttttcctctttgattttGTTGCTGAGATTGGAGTTTGTCCCATGAGAAATCACTgagcagatttaatttttt----------------------agacGGCATATTTGTTCTCTACCAATAttatca-aaagaatgaaatg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82512524 309 + 85787240 ATCCCAGGTGTTTTGTGATTTCTGTATTTGTGAAATACAT---TAACTCTCCTTATGGTTGGAGAAACCAAAACAGTGCAGGTAAATGGTG-TTTTGAAATATCCATAATAGTAGT----GAATAAGTCAGATCCTCACAGTGCTTCATTTTTT-ATGGAAAATTTGAACACATACCCACCTCTTCAGTACTGAAGAA-TTTTTTCCTCTTTGATTTTGTTGCTGAGATTGGAGTTTGTCCCATGAGAAATCACTGAGCAGATTTAATTTTTT----------------------AGACAGCATATTTGTTCTCTACCAATATTATCA-AAAGAATGAAATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14193909 328 - 49578535 ATCGCAGGTGTTTCGTGGTTTCTGTATTTGTGAGATACATGG-TTAACCCCATCATGGCTGGAGAAACCAAAGCAGTGCAGGTAAC---TG-TTCTGAAACATTCGTGACACTCAC----AAGTAAGTCAGATCCTCACAATGCCTCGTTTGTT-ATGGAAAGTTTGAACTCATACTCACCTCTTCAACACTGAAGAA-GTTTCTCCTGTCTGATTTGGTGGCTGAGATTGGAGTTTGTCCCATGA--AATCACTGAACAGAtttcattttgtttcttctttttctttttcttttctttttttttttttttttttACCAATATTATCC-AAAGAATGAAATG i calJac3.chr19 C 0 C 0 s mm10.chr1 178779008 307 + 195471971 ATTGTAGG-ATTTTGTTTGTTGTTTGTTTGC------------T-----TCTTGATTTTTGAATCTGCCAGAACAGAAGAAGTAAGCATTG-TTTGGAACTGTCTACAATGTTTTC----AAGAAAGTCAGAGCCTCCACATTCTTTGTGTTTT-ATAGAAA-TCTGAACACATTTCTAACTCTGCTGGACTTAAGGT-TTTGTTTTATTTTA--TTTATTGCTTAGATTGGACTTTGTCCCATGAGAAACCACTGGGCAGATTTAATTTTGTGCAG-------TCTCTCTTTTGAGACAGAGTATTTATTGTCTGGCAAGATTATCCAAAAGAAGGAAATG i mm10.chr1 I 387 C 0 s canFam3.chr7 36347023 332 + 80974532 ATCCTAAGTACTCTGTGATTTCCCTATTTGAGAAATGTGTTGCTAACTCTGATTGTCACTAGAGAAATAAAAAGAGAG-AAGTAAATGGTGTTTTTGAAATACCTGTAATATTGGCTGTGAAGGATATCAGATCATCATAGTTCTTCATTTTTT-ACAGAAAATTCAAACACAAATCCACCTCTTCAGTAATGAAGAATTTTTTTCCTTCTTAATGTTGTTGCTTAGATTGGCATTTGTCCCATGAGAAATCACTGAACAGATTTAATTTTGTTTAT-------TCTTTCTTTCGAGACAGCAGATTTATTCTCTGCCAAAATTATCC-AAAGAATGAAATG i canFam3.chr7 C 0 C 0 a score=1531345.000000 s hg38.chr1_KI270759v1_alt 185499 430 + 425601 AATTTCAACCAGAGATGT-AGG-ACCTAAAAAATTTAGGTCAAAGCTTACATATAAGTGGCTTTGTCTTGCTGGCATCAGTATTTTCGTATTTCTCTTCTCAAAAGAAGATAACTTTATATCAATATTT---CAGAATTCCATGTAGCCCACCCTACTGACTG-CATTGTTGTCTGTTATGC---TGAT----------ACAAAGATCTTTTGTTTTCCTTGCCTGGGATGTTCTGCC-ATATCTCAGATGGCTGGATGGACACAGGTGGCCTAAAATTCCTGTGCCAGATTCAGCATGATCCTGACCTAACTTGGCCTGGATCATAA-AGT-AAACCTTGGGGAATGTTCCCGTAGCCTGA-GCGGGAAACACTGGCCTC------TGGGAGCTCCTTATGGAGGAGAGAAAACGAGGAGCTGTAAACTGGACAATGGATT-AAAACTCTAGTAAACTG s panTro4.chr1 224937836 432 + 228333871 AATTTCAACCAGAGATGT-AGG-ACCTAAAAGATTTAGGTCAAAGCTTACATATAAGTGGCTTTGTCTGCGAATCATCAGTATTTTCGTATTTCTCTTCTCAAAAGAAGATAACTTTATATCAATATTT---CAGAATTCCATGTAGCCCACCCTACTGACTG-CATTGTTGCCTGTTATGCTGATGAT----------ATAAAGATCTTTTGTTTTCCTTGCCTGGGATGTTCTGCC-ATATCTCAGATGGCTGGATGGACACAGGTGGCCTAAAATTCCTGTGCCAGATTCAGCATGATCCTGACCTAACTTGGCCTGGATCATAA-AGT-AAACCTTGGGGAATGTTCCCGTGGCCTGA-GCCGGAAACACTGGCCTC------TGGGAGCTCCTTATGGAGGAGAGAAAACAAGGAGATGTAAAGTATACAACGGATC--AAACTCTAGTAAACCg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226296664 431 - 229942017 AATTTCAACCAGAGATGT-AGG-ACCTAAAAAATTTAGGTCAAAGCTTACATATAAGTGGCTTTGTCTTGCTGGCAGCAGTATTTTCGTATTTCTCTTCTCAAAAGAAGATAACTGTATATCAATATTT---CAGAATTCCATGTAGCCCACCCTACTGACTGCCATTGTTGCCTGTTATGC---TCAC----------ATAAAGATCTTCTGTTTTCCTTGCCTGGGATGTTCTGCC-ATATCTCAGGTGGCTGGATGGACACAGGTGGCCTAAAATTCCTGTGCCAGATTCAGCATGATCCTGACCTAACTTGGCCTGGATCATAA-AGT-AAGCCTTGGGGAATGTTCCTGTAGCCTGA-GCGGGAAACACCGGCCTC------CGGGAGCTCCTTATGGAGGAGAGAAAACAAGGAGCTGTAAAATGGACAATGGATT-AAAAATCTAGTAAACTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140186266 435 - 143122389 AATTTCAACCAGAGATGT-AGG-ACCTAAAAAATGTAGGTCAAAGCTTACATATAAGTGGCTTTGTCTTGCTGGCGTCGGTATTTTCGTATTTCTCTTCTCAAAAGAAGATAACTGTATATCAATATTTCAACAGAGTTCCATGTAGCCCACCCTGCTGGCTGCCACTGTTGCCTGTTATGC---TCAC----------ATAAAGATCTTTTGTTTTCCTTGCCTGGGATGTTCTGCC-GTATCTGAGATGGCTGGATGGACACAGGTGCCCTAAAATTCCTGTGCCGGATTCAGCATGATCCTGACCTAACTTGGCCTGGATCATAA-AGT-GAGCCTTGGGGAACGTTCCTGTAGCCTGA-GCGGGAAACACTGGCCTC------TGGGAACTCTATATGGAGGAGAGAAAACAAGGAGCTGTAAACTGGACAATGGATTTAAAAACCTAGTAAACTG i nomLeu3.chr5 I 306 C 0 s rheMac3.chr1 16900828 431 - 229590362 AATTTCAACCAGAGATGT-AGG-ACCTAAAAAATTTAGGTCAAAGCTTATATATAAGTGGCTTTGTCTTGCTGGCATCAGTATTTTCATATTTCTCTTCTCAAAAGAAGATAACTTGATATCAATATTT---CAGAATTCCATGTAGCCCACCCTACTCACTGCCATTGTTGCCTGTTATGC---TCAC----------ATAAGGATATTCTGTTTTCCTTGCCTGGGATGTTCTTCC-ATGTCTGAGATGGCTGGATGGACACAGGTGGCCTAAAATTCCTGTGCCAGATTCAGCATGATCCTGACCTAACTTGGCCTGGATCATAA-AGT-AAGCCTCAGGGAATGTTCCTATAGCCTGA-GCGGGAACCACTGGCCTC------TGGGAGCTCCTCATGGAGTAGAGAAAACAAGGAGCTATAAACTGGACAATGGATT-AAAAATCTAGTAAACTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223664137 431 - 227556264 AATTTCAACCAGAGATGT-AGG-ACCTAAAAAATTTAGGTCAAAGCTTATATATAAGTGGCTTTGTCTTGCTGGCATCAGTATTTTCATATTTCTCTTCTCAAAAGAAGATAACTTGATATCAATATTT---CAGAATTCCATGTAGCCCACCCTACTCACTGCCATTGTTGCCTGTTATGC---TCAC----------ATAAGGATATTCTGTTTTCCTTGCCTGGGATGTTCTTCC-ATGTCTGAGATGGCTGGATGGACACAGGTGGCCTAAAATTCCTGTGCCAGATTCAGCATGATCCTGACCTAACTTGGCCTGGATCATAA-AGT-AAGCCTCAGGGAATGTTCCTATAGCCTGA-GCGGGAACCACTGGCCTC------TGGGAGCTCCTCATGGAGTAGAGAAAACAAGGAGCTATAAACTGGACAatggatt-aaaaatctagtaaactg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16714499 431 - 220367699 aatttCAACCAGAGATGT-AGG-ACCTAAAAAATTTAGGTCAAAGCTTATATATAAGTGGCTTTGTCTTGCTGGCATCagtattttcatatttctcttctcaaaagaagataactTGATATCAATATTT---CAGAATTCCATGTAGCCCACCCTGCTCACTGCCATTGTTGCCTGTTATGC---TCAC----------ATaaggatattctgttttccttgCCTGGGATGTTCTTCC-ATGTCTGAGATGGCTGGATGGACACAGGTGGCCTAAAATTCCTGTACCAGATTCAGCATGATCCTGACCTAACTTGGCCTGGATCATAA-AGT-AAGCCTCAGGGAATGTTCCTATAGCCTGA-GCGGGAACCACTGGCCTC------TGGGAGCTCCTCATGGAGTAGAGAAAACAAGGAGCTATAAACTGGACAATGGATT-AAAAATCTAGTAAACTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82512833 431 + 85787240 AATTTCAACCAGAGATGT-AGG-ACCTAAAAAATTTAGGTCAAAGCTTATATATAAGTGGCTTTGTCTTGCTGGCATCAGTATTTTCATATTTCTCTTCTCAAAAGAAGATAACTTGATATCAATATTT---CAGAATTCCATGTAGCCCAGCCTACTCACTGCCATTGTTGTCTGTTATGC---GCAC----------ATAAGGATATTCTGTTTTCCTTGCCTGGGATGTTCTCCC-ATGTCTGAGATGGCTGGATGGACACAGGTGGCCTAAAATTCCTGTGCCAGATTCGGCATGATCCTAACCTAACTTGGCCTGGATCATAA-AGT-AAGCCTCAGGGAATGTTCCTATAGCCTGA-GCGGGAACCACTGGCCTC------TGGGAGCTCCTCATGGAGTAGAGAAAACCAGGAGCTATAAACTGGACAatggatt-aaaaatctagtaaactg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14194237 430 - 49578535 AATTTCAACCAGATGTCT-AGG-ACCTAAAAAATTTAGGTCAAAGCTAATATATAAATGGTTTCATCTGGCTGGCATCAGTATTTTCATATTTCTCATCTCAAAAGAAAATAACTGTAAACCAGTGTTT---CAGAATGACATGTAGCACACTGTACTGACTGCTGTTGCCGCCTGTTACTC---TGAC----------GTAAAAATCTTCTGTTTTCTTTGCCTGGGATGTTCTGAC-ATATCTGGGGTGGCTGGATGGACGCAGGTGGCCTAAGATTTCTGTGCCAGATTCAGTGCGATCCTGACCTAACTTGATCTGGATCATAA-GGT-AAGCCT-GGGGAATGTCGCTATAGCCTGA-GCAGGAACCACTGGCCTC------TGGGAGCCCCTGACAGAGGACAGGAAACAGGGAGCTGGACGCTGGACAGTGGACT-GAAAGTCTAGTGAACAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178779315 390 + 195471971 AGTTTCAACCAGAGATGG-GGGAACCCAAAACGTTGAGGTCAGAGCTAACATATAGGTGCCTTTGTCTTGCTGACATCAATATTTTTGTATTTCTCATCTAGAAAGGAAACAGCTAAGTATTGATATTT---TAGAATGAAAACCTCTCCGTTTTATTGACTGCTGTTATATTCTGTTGTTC---TGAT----------ATAAAAATGTTGT-------TTGCTGGGGACATACTGCT--CATCTGTG------------------------------TCCAATACCACATTTGTCATTACCACAGTCTAACTTGGTCTAGGGCACAAGAGC-AAGCCTGAGGGAGGGTT---ACAGATGGA----GGAGCCGCTGGCTTCTAAGCATGAGGACTCCCAATGCAGGAGAGAAGCTGGGGAGCC-CAAGCTGGCTGGTGGATT-AAA----TGGTAGGCTG i mm10.chr1 C 0 I 103 s canFam3.chr7 36347355 436 + 80974532 AATTTCAACCAGAGATGTAAGG-ACCTAAAAAATTTAGGTCA------ACATATAAGTGGCTTTGTCTTGCTGACATCAGGGTTTTCCCATTTCTTTTCTGGAAAGGAAACAACTATATACTGATATTT---CAGAATTAAAAATAGCCCACATTACTGACT---ATTGTTTCCTGATCCTC---TGATTAAAAAAAAAAAAAAAAACTTCTATTTTCTTTGTCAAAGGCATTCTGCTTATATCCCACACGGCTGAACAGACACAGGTAACCTAAGAGTCCTGTGCCAGATTCAGCGTTATGGTGACATAACTTTGGCTAGGTCATAG-AATCAAGCCCAGGAGAATGTTCCTATAGCCTGGGGCAGGGGGCTCAGGCCTC------TAGGAGCTCCTTATGGAGGACCAAAAACAAGGCACCCTAAACAGAACAATGAATT-AAAAATCTAGTCAACTG i canFam3.chr7 C 0 C 0 a score=25523.000000 s hg38.chr1_KI270759v1_alt 185929 15 + 425601 GCTGgggtgcagtgt s panTro4.chr1 224938268 14 + 228333871 gct-gggtgcagtgt i panTro4.chr1 C 0 I 791 s ponAbe2.chr1 226297095 15 - 229942017 ggctgagtgcagtgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140186701 15 - 143122389 ggccgggtgcagtgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16901259 15 - 229590362 ggctgggttcagtgg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223664568 15 - 227556264 ggctgggttcagtgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16714930 15 - 220367699 GGCTGGGttcagtgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82513264 15 + 85787240 ggctgggttcagtgg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14194667 15 - 49578535 ggctgtgcatggcgg i calJac3.chr19 C 0 C 0 e mm10.chr1 178779705 103 + 195471971 I e canFam3.chr7 36347791 0 + 80974532 C a score=400860.000000 s hg38.chr1_KI270759v1_alt 185944 148 + 425601 ctcacgcctatcatctcagcacttcgggaggccgaggtgggtggatcaactgaggtcaggagctcgacaccagcctggccaacatagtgaaaccccatctctactaaaaatacaaaaattacccaggcgtggtggcgggtgcctgtaa s panTro4.chr1 224939073 148 + 228333871 ctcacgcctatcatctcagcacttcgggaggccaaggtgggtggatcaactgaggtcaggagcttgacaccagcctggccaacatagtgaaaccccatctctactaaaaatacaaaaattacccaggcgtggtggcgggcgcctgtaa i panTro4.chr1 I 791 C 0 s ponAbe2.chr1 226297110 148 - 229942017 ctcacacctataatctcagcactttgggaggccgaggtgggtggatcaactgaggtcaggagttcgacaccagcctggccaacacagtgaaaccccatctctactaaaaatacaaaaattacccaggcgtggtggcgggcggctgtaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140186716 148 - 143122389 ctcacgcctataatctcagcagtttcagaggccgaggtgggtggatcaactgaggtcaggagcttgacaccagcctggccaacatagtgaaaccccgtctctactaaaaatacaaaaattacccaggcgtggtggcaggtgcctgtaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16901274 147 - 229590362 ttcacgcctataatctccgcactttgggaggccgaggcgggt-gatcatctgaggtcaggagctcgacaccagcctggccaacatggtgaaacctcgtctctactaacaatacacaaattacccgggtgtggcggtgggtgcctgtaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223664583 147 - 227556264 ttcacgcctataatctcagcactttgggaggccgaggcgggt-gatcatctgaggtcaggagctcgacaccagcctggccaacatagtgaaacctcgtctctactaaaaatacacaaattacccgggtgtggtggtgggtgcctgtaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16714945 148 - 220367699 ttcacgcctataatctcagcactttggggggccgaggtgggtggatcatctgaagtcaggagctcgacaccagcctggccaacatagtgaaacctcgtctctactaaaaataaaaaaattacccgggtgtggtggtgggtgcctgtaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82513279 148 + 85787240 ctgacgcctataatctcagcactttgggaggccgaggcgggtggatcatctgaagtcaggagctcgacaccagcctggccaacatagtgaaacttcgtctctactaaaaatacaaaaattacccgggtgtggtggtgggtgcctgtaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14194682 148 - 49578535 ctcacgcctctcatcccaacactctgggaagccaaggcaggcagatcacctgaggttaggagttcgacaccagactggccaacatggtgaaacgctgtctctactaaaaatacaaaaattagccagacatggtggtgagtgcctataa i calJac3.chr19 C 0 C 0 s canFam3.chr7 36347791 60 + 80974532 -----------AATTC-------------------------TGGATCA------------GGCTTACCTCCTGTTTGGCTAA------GTTACCAAGTTTCTCTTGA----------------------------------CCTGTTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178779705 103 + 195471971 I a score=204288.000000 s hg38.chr1_KI270759v1_alt 186092 72 + 425601 tcccagctactcagggggctgaggtgggagaaccacttgaacctgggaggtggaggttgcagtgag------ccagga s panTro4.chr1 224939221 72 + 228333871 tcccagctactcagggggctgaggtgggagaaccacttgaacctgggaggtggaggttgcagtgag------ccagga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226297258 72 - 229942017 tcccagctactcagggggctgaggtgggagaaccacttgaacccgggaggtggaggttgcagtgag------ccagga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140186864 72 - 143122389 tcccagctactcagggggctgaggtggaagaaccacttgaacccgggaggtggaggttgtggtgag------ccagga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16901421 72 - 229590362 tcccagctactcaggggactgagatgggagaatcacttgaacccgagagacggaggttgcagtgag------ccaaga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223664730 72 - 227556264 tcccagctactcaggggactgagatgggagaatcacttgaacccgagagacggaggttgcagtgag------ccaagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16715093 72 - 220367699 tcccagctactcaggggactgagatgggagaatcacttgaacccgagagacggaggttgcagtgag------ccaaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82513427 72 + 85787240 tcccagctactcaggggactgagatgggagaatcacttgaacccgagagacggaggttgcagtgag------ccaaga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14194830 72 - 49578535 tcccagctacttgggaggctgaggtgggagaatgacttgaacccaggaggcagaggttgcagtcag------ccgaga i calJac3.chr19 C 0 C 0 s mm10.chr1 178779808 47 + 195471971 TTCCAGCCA------------------------------AGTCTGGAGTTTGGAGTTTGT-GTGAGACTACATCAGGC i mm10.chr1 I 103 C 0 s canFam3.chr7 36347851 31 + 80974532 TTCTGATTA--------------------------------------AAATGGA---TATAATGAA------CCAGGA i canFam3.chr7 C 0 C 0 a score=451702.000000 s hg38.chr1_KI270759v1_alt 186164 182 + 425601 tccttccactgca------ctctagcctgggcaacagagc-agataatctcaaaagaaaaaaaaaaaaTCTGGTAAACTGAATTCCGGGTCAGATCTTCAGATcttacctcctgtgtaaccttggctaagttaccaaatttctcttcacctcagtttctctgactgtaaaatggagacacaagccagaa s panTro4.chr1 224939293 172 + 228333871 tccttccactgca------ctctagcctgggcaacagagc-agacaatctcaaaagaaaaaaaaaa--TCTAGTAAACTgaattctgggtcagatctt--------acctcctgtgtaaccttggctaagttaccaaattcctcttcacctcagtttctctgactgtaaaatggagacacaagccagaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226297330 173 - 229942017 tccttccactgca------ctctagcctgggcaacagagcaagataatctcaaaagaaaaaaaaaa--TCTAGTAAACTGaattctgggtcagatctt--------acctcctgtgtaaccttggctaagttaccaaatttctcttcacctcactttctctgactgtaaaatggagacacgagccagaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140186936 173 - 143122389 tccttccactgca------ctgtagcctgggcaacagaggaagataatctcgaaagaaaaaaaaaa--TCTAGTAAACTgaattctgggtcagatctt--------acctcctgtgtaaccttggctaagtcaccaaatttctcttcacctcagtttctctgactgtaaaatggagacacgagccagaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16901493 172 - 229590362 tccttccactgca------ctctagcctgggcaacagagcaagattatctcaaaagaaaagaaaaa-GTCTAGTAAActgaattctgagtcagatctt--------acctcctgtgtaaccttggctaagttaccaaatttctcttcacctcagtttctctgactg--aaatggagacacgaggcagaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223664802 172 - 227556264 tccttccactgca------ctttagcctgggcaacagagcaagattatctcaaaagaaaagaaaaa-gtctagtaaactgaattctgagtcagatctt--------acctcctgtgtaaccttggctaagttaccaaatttctcttcacctcagtttctctgactg--aaatggagacacgaggcagaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16715165 172 - 220367699 tcctcccactgca------ctctagcctgggcaacagagcaagattatctcaaaagaaaagaaaaa-gtctagtAAACTGAATTCTGAGTCAGATCTT--------ACCTCCTGTGTAACCTTGGCTAAGTTACCAAATTTCTCTTCACCTCAGTTTCTCTGACTG--AAATGGAGACATGAGGCAGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82513499 172 + 85787240 tccttccactgca------ctctagcctgggcaacagagtgagattatctcaaaagaaaagaaaaa-atctagtaaactgaattctgagtcagatctt--------acttcctgtgtaactttggctaagttaccaaatttctcttcacctcagtttctctgactg--aaatggagacatgagccagaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14194902 156 - 49578535 ttgtaccattgca------ctctagcctgggcaacagagtgagactaactt-----aaaaaaaaaa--TGGAGTAAACTgaattctgggtcagatctt--------acctcctgtgcaaccttggctaagttaccgactttctcttcacctcagtttctctgactg--aagtggagaca---------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178779855 111 + 195471971 CCTTTCTGAGGTATCTCTCCTCCATGTGTGGCAAGGGAGC----------------------AGCA----------------------GTGTGATCTT--------ACT--CTGTGCTCCTT------AGGTCCCTCCCCTCTGTGCTCCTTAGGTCCCTCCCCTC-------------TGTGC----- i mm10.chr1 C 0 C 0 e canFam3.chr7 36347882 0 + 80974532 C a score=939886.000000 s hg38.chr1_KI270759v1_alt 186346 302 + 425601 aatctttaagttcctgccaagttttaagag-tttgaagcttc----cacgatACTCTGTGCCC----AGGCCCTTCCTGATGTCTGCTTTTACAGCGGGACAAGCAGCAATGCTGTTGTACTCTCTGCATCTTGGGGCTTGTTCCTCTGAAC-CCTTGAAGACAAGGGCTGAG----CCGCGTCAGCTCTTTCCCAAAACACAATTTAAACCCTTCGGAGTGGTCAGAAATGCCACTTTGGGAGGCCTCCCTGGGTTCTCTGGGTGTTTTGTTGAAGCAGTC-TCAGGTTCTCTAACGTTCTTTTTGTTGAAGATGA s panTro4.chr1 224939465 302 + 228333871 aatctttaagttcctgccaagttttaagag-tttgaagcttc----tatgatACTCTGTGCCC----AGGCCCTTCCTGATGTCTGCTTTCACAGCGGGTCAAGCAGCAATGCTGTTGTACTCTCTGCATCTTGGGGCTTGTTCCTCTGAAC-GCTTGAAGACAAGGGCTGAG----CCGCGTCAGCTCTTTCCCAAAACACAATTTAAACCCGTCGCAGTGGTCAGAAATGCCACTTTGGGAGGCCTCCCTGGGTTCTCTGGGTGTTTTGTTGAAGCAGCC-TCAGGTTCTCTAACGTTCTTTCTGTTGAAGATGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226297503 301 - 229942017 aatctttaagttcctgccaagttttaagag-tttgaagcttc----catgatACTCTGTACCC----AGGCCCTTCCTGATGTGTGTTTTCACAGCAGGACAAGCAGCAATGCTGTTGTACTCTCTGCAT-TTGGGGCTTGTTCCTCTGAAC-CCTTGAAGACAAGGGCTGAG----CCGTGTCAGTTCTTTCCCAAAACACAATTTAAACCCTTCGCAGTGGTCAGAAATGCCACTTTGGGAGGCCTCCCTGGGTTCTCTGGGTGTTTTGTTGAAGCAGCA-TCAGGTTCTCTAATGTTCTTTTTGTTGAAGACAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140187109 301 - 143122389 aatctttcagttcctgccaAG-TTGAAGAG-TTTGAAGCTTC----CGTGATATTCTGTGCCC----AGGCCCTTCCTGATGTCTGCTTCCACAGCGGGACAAGCAGCAATGCTGTTGTACTCTCTGCCTCTTGGGGCTTGTTCCTCTGAAC-CCCTGAAGACAAGGGCTGAG----CCCTGTCAGCTCTTTCCCAGAACACAATTTAAACCCTTCGCAGTAGTCAGAAATGCCACTTTGGGAGGCCTCCCTGGGTTCTCTGGGTGTTCTGTTGAAGCAGCA-TCAGGTTCTCTAATGCTCTTTTTGTTGAAGATGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16901665 301 - 229590362 aatctttaagttcctgccaag-tttaagag-tttgaagattc----catgatACTCAGTGCCC----AGGCCCTTCCTTATGTCTGCTTTCACAGCAGGACAAGCAGCAATGCTGTTTTACTGTCTGCATCTTGGGGCTTGTTCCTCTGAAC-CCTTGAAGACAAGGGCTGAG----CCCTGTCAGCTCTTTCCTAAAACACAATTTAAACCCTTCACAATGGTCAGAAATGCCACTCTGGGAGGCCTCCCCGGGTTCTCTGGGTGTTTTATTGAAGCAGCA-TCAGGTTCTCTAATGTTCTTTTTGTTGAAGATGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223664974 301 - 227556264 aatctttaagttcctgccaag-tttaagag-tttgaagattc----catgatACTCTGTGCCC----AGGCCCTTCCTTATGTCTGCTTTCACAGCAGGACAAGCAGCAATGCTGTTTTACTGTCTGCATCTTGGGGCTTGTTCCTCTGAAC-CCTTGAAGACAAGGGCTGAG----CCCTGTCAGCTCTTTCCTAAAACACAATTTAAACCCTTCACAATGGTCAGAAATGCCACTCTGGGAGGCCTCCCCGGGTTCTCTGGGTGTTTTATTGAAGCAGCA-TCAGGTTCTCTAATGTTCTTTTTGTTGAAGATGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16715337 301 - 220367699 AATCTTTAAGTTCCTGCCAAG-TTTAAGAG-TTTGAAGATTC----CATGATACTCTGTGCCC----AGGCCCTTCCTTATGTCTGCTTTCACAGCAGGACAAGCAGCAATGCTGTTTTACTGTCTGCATCTTGGGGCTTGTTCCTCTGAAC-CCTTGAAGACAAGGGCTGAG----CCCTGTCAGCTCTTTCCTAAAACACAATTTAAACCCTTAACAATGGTCAGAAATGCCACTCTGGGAGGCCTCCCCGGGTTCTCTGGGTGTTTTGTTGAAGCAGCA-TCAGGTTCTCTAATGTTCTTTTTGTTGAAGATGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82513671 299 + 85787240 aatctttaagttcctgccaag-tttaagag-tttgaagattc----catgatACTCTGTGCCC----AGGCCCTTCCT--TGTTTGCTTTCACAGCAGGACAAGCAGCAATGCTGTTTTACAGTCTGCATCTTGGGGCTTGTTCGTCTGAAC-CCTTGAAGACAAGGGCTGAG----CCCTGTCAGCTCTTTCCTAAAACACAATTTAAATCCTTCACAATGGTCAGAAATGCCACTCTGGGAGGCCTCCCTGGGTTCTCTGGGTGTTTTGTTGAAGCAGCA-TCAGGTTCTCTAATGTTCTTTTTGTTGAAGATGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14195058 291 - 49578535 --------agttcttgcccag-tttaGGAG-TTTGAAGATTC----CATGACACTC--TGCCC----AGGCCCTTCCAGAGGTCTGCTTTCACAGCAGGACAAGCAGTCATGCTGTCTTCCTCTCAGCGGCTTGGGGGCTGTTCCTGTGAAC-CCAGGAGGAC-AGGGCTGAG----CACTGTCAGCTCTTTCCCCAAACATAATTTAACCCCTTCTCAATGGTCAGGAATGCCACTTTCAGAGGCCTCTCTGGGTTCTCTGGGTGTTTCGTTGAAGCAGCGTTCAGGTTCTCTGATGTACTTTGTGTTTAAAATGA i calJac3.chr19 C 0 I 298 s mm10.chr1 178779966 222 + 195471971 --TCCTTAGGTCCCTCCC-----------------------------------CTCTGTGCTCCTTAGGTCCCTCCCCTCTGTGCTCCTT------AGGTC--------------------------CCTCCCCGGAGCTCTTCCTCTGAGT-CCCCCAATCCA--------------------AGCTCTTTGCTTAAATTTCGTTTAATCCCTTTGTAGTGGTTAGAGATGCCACTCTGGCA-GCCTTTCTGCTTTCTC----TGTTTTGTTTTAGAAGAGTTTACATTCTATACTCTTTTTTTGTTTTAAGATGA i mm10.chr1 C 0 C 0 s canFam3.chr7 36347882 256 + 80974532 AATCTCGGAGTTCTTGCCAAG-TTTAAGAGTTTTGAGGATTCCGTTCATGATACTCGGCGCCG----AGGACCTTCCTGATATCTGCT-----------------------------GTTCATTCTGTGTCTTGGGGCCACTCCCCACAAGCTCCCTGAAGAC-AGAGCTGCGTGTACACTATCAGCCCC------------------ACCCTCTCA-------CAGAAATGTCACTTTGGT-GGCCTCTCTAGGTTCTTGGGATGTTTCGCTGAAGCAGGATTCAGGTCCTCTAATGTTCTCTGGGTGCAAGATGG i canFam3.chr7 C 0 C 0 a score=1475673.000000 s hg38.chr1_KI270759v1_alt 186648 419 + 425601 TATCTACAAGCTTTATAAGCTTTCTTCTGATGGG-----------GAGAGGGAAGAG-------------------------------------GTTCTCTT-AAATACAGTGTTCAACTATCAACCGTCATCTTTA---------------------GGGAGACCCTTCAATAACCTCAGTTTC-TCTTTGTGTATAACTAGAGCTAATAAGAGAATGTGGGTAAATTGGGCTAAAACAAAGCCAACATTACAGTAGTTCACATGATATTTTTAAAAGAAAAACAAAGGCGG-CACGCCAGACTAAA---TAAGGCTACCATGGCCACCGAAGTTTTGCATCAATTTGTGAC-CAAAGGACATTtttcaaactgacctaagccaatttgg-tatctgcagttatttttggtcaatatcattagcctcccatagttcaaagtaggtggggctataggttttctcctacaaaaccttgtttccaggtcatgttacaa s panTro4.chr1 224939767 419 + 228333871 TATCTACAAGCTTTATAAGCTTTCTTCTGACGGG-----------GAGAGGGAAGAG-------------------------------------GTTCTCTT-AAATACAGCGTTCAACTGTCAACCGTCATCTTTA---------------------GGGAGACCCTTCAATAACCTCAGTTTC-TCTTTGTGTATAACTAGAGCTAATAAGAGAATGTGGGTATATTGGGCTAAAACAAAGCCAACATTACAGTAGTGCACATGATATTCTTAAAAGAAAAACAAAGGCGG-CACGCCAGACTAAA---TAAGGCTACCATGGCCACCGAAGTTTTGCATCAATTTGTGAC-CAAAGGACATTtttcaaactgacctaagccaatttgg-tatctgcagttatttttggtcaatatcattagcctcccatagttcaaagtaggtggggctataggttttctcctacaaaaccttgtttccaggtcatgttacaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226297804 420 - 229942017 TATCTACAAGCTTTATAAGCTTTCTTCTGATGGG-----------GAGAGAGAAGAGG---------------------------------TTAGTTTTCTT-AAATACAGTGTTCAACTATCAACCGTCAACTTTA---------------------GGGAGACCCTTCAATAACCTCAGTTTC-TCTTTGTGTGTAACTAGAGCTAATAAGAGAATGTGGGTAAATTGGGCTAAAACTAAGCCAACATTACAGTAGTTCAC---ATATTTTTAAAAGAAAAACAAAGGTGG-CAAGCCAGACTAAA---TAAGGCTACCATGGCCACCGAAGTTTTGCATCAATTTGTGAC-CAAAGGACATTtttcaaactgacctaagccaatttgg-tatctgcagttatttttggtcaatatcattagcctcccatagttcaaattaggtgggactacaggttttctcctacaaaaccttgtttccaggtcatgttacaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140187410 423 - 143122389 TATCTACAAGCTTTATACGCTTTTTTCTGATGGG-----------GAGAGGGAAGAGG---------------------------------TTAGTTCTCTT-AAATACAGTGTTCAACTATCAACCGTCAACTTTA---------------------GGGAGACCCTTCAATAGCCTCAGTTTC-TCTTCGTGTATAACTAGAGCTAATAAGAGAATGTGGGTAAATTGGGCTAAAACTAAGCCAACATTACAGTAGTTCACATGATATTTTTAAAAGAAAAACAAAGGTGG-CAAGCCAGACTAAA---TAAGGCTACCATGGCCACCGAAGTTTTGCATCAATCTGTGAC-CAAAGGACATTtttcaaactgacctgagccaatttgg-tatctgcagttatttttggtcaatatcattagcctcccatagttcaaagtaggtggggctataggttttctcctacaaaaccttgtttccaggtcgtgttacaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16901966 423 - 229590362 TATCTACAAGCTTTATAAGCTTTCTTCTGATGGG-----------GACAGGGAAGAGG---------------------------------TTAGTTCTCTT-AAATACAGTGTTCAACTATCAACCATCAACTTTA---------------------GGGAGGCCGTTCAATAGCCCCAGTTTC-TCTTTGTGTGTAACTAGAGCTAATAAGAGAATGTGGGTAAACTGGGCTGAAAATAAGCCAGCATTACAGTAGTTCATATGATATTTTTAAAAGCAAAACAAAGGTGG-CAAGCCAGACTAAA---TAAGGCTACCATGGCCACTGAAGTTTTGCATCAATTTGTGAC-CAAAGGACATTtttcaaattgacctaagccaatttgg-tatctgcagttatttttggtaaatatcattagcctgccatagttcaaagtaggtgaggctatgggttttctcctacaaaaccttgtttccaggttgtgttacaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223665275 423 - 227556264 TATCTACAAGCTTTATAAGCTTTCTTCTGATGGG-----------GACAGGGAAGAGG---------------------------------TTAGTTCTCTT-AAATACAGTGTTCAACTATCAACCATCAACTTTA---------------------GGGAGGCCGTTCAATAGCCCCAGTTTC-TCTTTGTGTGTAACTAGAGCTAATAAGAGAATGTGGGTAAACTGGGCTGAAAATAAGCCAGCATTACAGTAGTTCATATGATATTTTTAAAAGCAAAACAAAGGTGG-CAAGCCAGACTAAA---TAAGGCTACCATGGCCACTGAAGTTTTGCTTCAATTTGTGAC-CAAAGGACATTtttcaaattgacctaagccaatttgg-tatctgcagttatttttggtaaatatcattagcctgccatagttcaaagtaggtgaggctatgggttttctcctacaaaaccttgtttccaggttgtgttacaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16715638 423 - 220367699 TATCTACAAGCTTTATAAGCTTTCTTCTGATGGG-----------GACAGGGAAGAGG---------------------------------TTAGTTCTCTT-AAATACAGTGTTCAACTATCAACCATCAACTTCA---------------------GGGAGGCCGTTCAATAGCTCCATTTTC-TCTTTGTGTGTAACTAGAGCTAATAAGAGAATGTGGGTAAACTGGGCTGAAAATAAGCCAGCATTACAGTGGTtcatatgatatttttaaaagcaaaacaaaggtgG-CAAGCCAGACTAAA---TAAGGCTACCATGGCCACTGAAGTTTTGCATCAATTTGTGAC-CAAAGGACATTTTTCAAATTGACCTAAGCCAATTTGG-TATCTGCAGTTATTTTTGGTAAATATCATTAGCCTGCCATAGTTCAAAGTAGGTGAGGCTATGGGTTTTCTCCTACAAAACCTTGTTTCCAGGTTgtgttacaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82513970 423 + 85787240 TATCTACAAGCTTTATAAGCTTTCTTCTGATGGG-----------GACAGGGAAGAGG---------------------------------TTAGTTCTCTTAAAATACAGTGTTCAACTATCAACCGTCAACTTTA---------------------GGGAGGCCGTTCAATAGCCCCAGTTTC-TCTTTGTGTATAACTAGAGCTAATAAGATAATGTGGGTAAACTGGGCTGAAAATAAGCCAGCATTACAGTAGTTCATATGATATTTTTAAAAGAAAAACAAAGGTGG-CAAGCCAGACTAAA---TAAGGCTACCATGGCCACTGAAGTTTTGCATCAATTTGTGAC-CAAAGGACATTtttcaaactgacctaagccaatttgg-tatctgcagttatttttggtaaatatcattagcctcccatagttcaaagtaggtggggctataggttttctcctac-aaaccttgtttccaggttgtgttacac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14195647 400 - 49578535 TATCTACAAGCTTTAGAAGCTTTCTTCTGATGGG-----------GAAAGGGAAGAGT---------------------------------TTAGTTCCCCT-GAATACAGTGCTCAACTATCAACTGTCAACTTTA-----------------------GAAACCCTTCAATAGCCTCAGTTTC-TCTTTGTGTGTAATTAGAGCTAATAAGATAATGTGGGTAAATTGGGCTAAAAGTAAGCCAAGATTACCGTAGTTCACATGATATTTTTAAAAGAAAAACGAA-GTGG-GAAGCCAGAGTCAA---TAAGGCTGCTGTGGCCCCTGAAGTTTTGCATCAACTCGTGGC-CAAAGGATATTtttcaaactgacctaagccaatttgg-tatccgtagttatttttgg--------------------tagttcagagtaggtggggctctaggttttctcctacaaaaccttgtttccaggttgtgttacag i calJac3.chr19 I 298 C 0 s mm10.chr1 178780188 456 + 195471971 TATTTACAAGCTTTGCAAGCTGCCTATGGATGGGGTGGGGGTGGAGAGGGGGgagagagggagagagaaagagagaaagagagagagagaTCCAGTTATCTT-AAATAGAGTG--------TCAGTTGCCAACTTTGGTGGGAGGGTAGGGGGTGGCGGAGAGTGTCTTCAGTAGCCTTAGTTTC-TATATGTGTACATTTA-AGTGTATAGAGGAAAGTGAGT---------TAAGAATTGGCCAA-GCTATAACACTTTAT---ATGTCTTTAAAAGGAAAGCAAAGATGGAAAAGTCA---------------CTACTGTGGCCAGGACAGGTTCACAATGACTTGGGAAGCAAAGCAGGGTTTTCCAAGTGACTTGTGCCCATGTGGTTGCTTGCAGTTACTCTGGG-GAATATGACTGGCTTCTCATGGTTTGAGGTTGGAGAAACTGTGGGTTTTCCTTTTTAAAGCCTTGTATGTAAGATaaggaagaa i mm10.chr1 C 0 C 0 s canFam3.chr7 36348138 417 + 80974532 TATATACAAGCTTTGTAAGCTTTCTTCTGATA-------------GAGAGGAAATAAT---------------------------------TCAATTCTCCC-GAACACA-----CAGCGTTCACCAGTCAACTTGA---------------------AGAAGACATTTCACTAATCTTAATTCCTTTTTTGTGTGCAGCTGGAATTAACAAGAGGATGTGGCTAAACTGGGCCAAGAAAAGACTAAGATTACAATAGTTCACATGATAGATTT-AGAGTAAAACACAGGTGG-AAAGCCAAGGCAAATGCTAAGGCCATCATGACCCCTTAAGTTTTGCATACAACTGTAAAGTAAAGGACATTtttcaaactcacctaagccaatctggttatctattgttatttttggtagatgctgtcagcctcccatagttcaaggtagg----gctatacgtttcctgccacaaaaccttgtttctaggtggtgttataa i canFam3.chr7 C 0 C 0 a score=31987.000000 s hg38.chr1_KI270759v1_alt 187067 10 + 425601 aggaaataag s panTro4.chr1 224940186 10 + 228333871 aggaaataag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226298224 10 - 229942017 aggaaataag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140187833 10 - 143122389 aggaaataag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16902389 10 - 229590362 aggaaataaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223665698 10 - 227556264 aggaaataaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16716061 10 - 220367699 aggaaataaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82514393 10 + 85787240 aggaaataaa i chlSab2.chr25 C 0 C 0 s mm10.chr1 178780644 10 + 195471971 aggaaggaag i mm10.chr1 C 0 I 4726 s canFam3.chr7 36348555 10 + 80974532 agcacataaa i canFam3.chr7 C 0 C 0 e calJac3.chr19 14196047 0 - 49578535 C a score=26154.000000 s hg38.chr1_KI270759v1_alt 187077 15 + 425601 tcttttattttt------att s panTro4.chr1 224940196 15 + 228333871 tcttttattttt------att i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226298234 14 - 229942017 tctttt-ttttt------att i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140187843 21 - 143122389 tctttttttttttttttaatt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16902399 14 - 229590362 tctctt-ttttt------gtt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223665708 14 - 227556264 tctctt-ttttt------gtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16716071 14 - 220367699 tctctt-ttttt------gtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82514403 14 + 85787240 tctctt-ttttt------gtt i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36348565 15 + 80974532 tctttttttttt------aat i canFam3.chr7 C 0 I 84 e mm10.chr1 178780654 4726 + 195471971 I e calJac3.chr19 14196047 0 - 49578535 C a score=477706.000000 s hg38.chr1_KI270759v1_alt 187092 203 + 425601 tttatttttggagatggagtcttgctctgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcgcgccccaccacatctggctaatttttatatttgtagtagagacggggtttcatcatgttggccag s panTro4.chr1 224940211 203 + 228333871 tttatttttggagatggagtcttgctctgttgcccaggctggagtgcagtggcgtgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggtgtgccccaccacacctggctaatttttatatttgtagtagagacggggtttcatcatgttggccag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226298248 203 - 229942017 ttaatttttggagatggagtcttgctctgtcgcccaggctggagtgcagtggcgtgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcctgaatagctgggactacaggcacgcgccaccacacccggctaatttttatatttgtagtagagacggggtttcatcatgttggccag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140187864 203 - 143122389 tttatttttggagatggagtctcgctctgtcacccaggctagagtgcagtggcatgatcttggctcactgcaacctctgcttcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcacgtgccaccacacccggctaatttttatatttgtaatagagatggggtttcatcatgttggccag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16902413 203 - 229590362 ctgtgtttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgtgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgtctcagcctcctgagtagctgggactacaggcgcgtgccaccacacccggctaatttttatatttttagcagagacgaggtttcaccatgttggccag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223665722 203 - 227556264 ctgtgtttttgagacggagtctcgctctgtcacccaggctggagtgcagtggcgtgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgtctcagcctcctgagtagctgggactacaggcgcgtgccaccacacccggctaatttttatatttttagcagagacgaggtttcaccatgttggccag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16716085 201 - 220367699 ctgtgtttttgagacggagtctcgctctgtcacccaggctggagtgcagtggcgtgatcttggatcactgcaacctctgcctcccgggttcaagcgattct-ctgtctcag-ctcatgagtagctgggactacaggtgcgtgccaccacacccggctaatttttatatttttagcagagacgaggtttcaccatgttggccag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82514417 203 + 85787240 ttgtgtttctgagacggagtctcgctctgtcacccaggctggagtgcagtggcatgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgtctcaacctcctgagtagctgggactacaggcgcgtgccaccacacccagctaatttttatatttttagcagagatggggtttcaccatgttggccag i chlSab2.chr25 C 0 C 0 e mm10.chr1 178780654 4726 + 195471971 I e canFam3.chr7 36348580 84 + 80974532 I e calJac3.chr19 14196047 0 - 49578535 C a score=205889.000000 s hg38.chr1_KI270759v1_alt 187295 87 + 425601 gatggtcttgatctcctgacctcgtcatc-cacctgcctcggcttcccaaagtgctgggattacaggtgtgaaccact---gtgcctggac s panTro4.chr1 224940414 87 + 228333871 gattgtcttgatctcctgacctcgtcatc-cacccgcctcggcttcccaaagtgctgggattacaggtgtgagccact---gtgcctggac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226298451 87 - 229942017 gatggtcttgatctcctgatcttgtcatc-cacctgccttggcttcccaaagtgctgggattacaggtgtgagccact---gtgcctggac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140188067 87 - 143122389 gatggtctcgatctcctgacctcgtcatc-cacccgcctcggcttcccaaagtgctgggattacaggtgtgagccaca---gtgcctggac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16902616 87 - 229590362 ggtggtctcgatcacctgacctcgtgatc-cacccgcctcggcctcccaaagtgctgggattacaggtgtaagccact---gcgcccggac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223665925 87 - 227556264 ggtggtctcgatcacctgacctcgtgatc-cacccgcctcggcctcccaaagtgctgggattacaggtgtaagccact---gcgcccggac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16716286 87 - 220367699 ggtggtctcgatcacctgacctcgtgatc-cacccgcctcggcctcccaaagtgctgggattacaggtgtaagccact---gcgcccggac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82514620 87 + 85787240 ggtggtctcgatcacctgacctcgtgatc-cacccacctcggcctcccaaagtgctgggattacaggtgtaagccact---gcgcccggac i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36348664 80 + 80974532 gtgggactcgatcccaggaccttgtgatcacac---cctgagct-----aaaggcagaagctcaactgctaagccacccaggtgtccc--- i canFam3.chr7 I 84 C 0 e mm10.chr1 178780654 4726 + 195471971 I e calJac3.chr19 14196047 0 - 49578535 C a score=1003949.000000 s hg38.chr1_KI270759v1_alt 187382 328 + 425601 -aggaaataagtcttaaaccaaattctgccatacttacaaac--gtgt-agcaagctgacaggaaaagtcctacaattcgttttgtaaacttgatgaaaagccacgcccctatccttttagg----caatcctacagcattttacataaagggtaccctagaggcaagtgcggttattgcactaatggcatgagccag-ataatcatccagtta--gtcaagcagagaaaagtgctcctggaatg-acctgaacaatggaccaatcag--ttcaaatccctaatttgattaattgggcttgctgg-------------attttatacaagcaagaatgcctgctcaatatttcta s panTro4.chr1 224940501 328 + 228333871 -aggaaataagtcttaaaccaaattctgccatacttacaaac--gtgt-agcaagctgacaggaaaagtcctacaattcgttttgtaaacttgatgaaaagccacgcccctatccttttagg----caatcctacagcattttacataaagggtaccctagaggcaagtgtggttattgcactaatggcatgagccag-ataatcatccagtta--gtcaagcagagaaaagtgctcctggaatg-acctgaacaatggaccaatcag--ttcaaatccctaatttgattaattgggcttgctgg-------------attttataaaagcaagaatgcctgctcaatatttcta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226298538 325 - 229942017 -aggaaataagtcttaaaccacattctgccatacttacaaacatgtgt-agcaagctgacaggaaaagtcctacaattcgttttgtaaacttgatgaaaagccatgcccctatccttttagg----caatcctacagcattttatataaagggtaccctagaggcaagtgtggttattgcactaatggcatgagccag-ataatcatccagtta--gtcaagcagaggaaagtgctcctggaatg-acctgaacaatggaccaatcgg--ttc-aatcccta----ggttaattgggcttgctgg-------------attttataaaagcaagaatgcctgctcaatatttcta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140188154 324 - 143122389 -aggaaataagtcttaagccaaattctgccatacttacaaacatgtgt-agcaagctgacaggaaaagtcctacaattcgttttgtaaacttgatgaaaagccatgcccctatccttttagg----caatcctacagcattttacataaagggtaccctagaggcaagtgtggttattgcactaatggcatgagccag-ataattatccagtta--gtcaagcagagaaaagtgctcctggaatg-acctgaacaatggaccaatcag--ttcaaatcccta----ggttaatggggcttgctgg-------------attttataaaagcaagaatg-ctgctcaata-ttcta i nomLeu3.chr5 C 0 I 314 s rheMac3.chr1 16902703 323 - 229590362 -aggaaataagtcttaagccaaattctgccatacttacagacacgtgt-----agctgaccggaagagtcctacaattcgttttgtaagcttgatgaaaagccgtgcccctatccttttagg----taatcctacagcactttatataacgggttccctagaggtgagtgtggttattgtactaatggcatgagccagaataatcatccagtta--gtcaagcagagaaaagtgctcctggaatg-acccgaacaatgggccaagcag--ttcaaatcccta----ggttagttgggcttgctgg-------------gttttataagagcaggaatgcctgctcaatatttcta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223666012 323 - 227556264 -aggaaataagtcttaagccaaattctgccatacttacagacacgtgt-----agctgaccggaagagtcctacaattcgttttgtaagcttgatgaaaagccgtgcccctatccttttagg----taatcctacagcactttatataacgggttccctagaggtgagtgtggttattgtactaatggcatgagccagaataatcatccagtta--gtcaagcagagaaaagtgctcctggaatg-acccgaacaatgggccaagcag--ttcaaatcccta----ggttagttgggcttgctgg-------------gttttataagagcaggaatgcctgctcaatatttcta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16716373 323 - 220367699 -agGAAATAAGTCTTAAGCCAAATTCTGCCATACTTACAGACACGTGT-----AGCTGACCGGAAGAGTCCTACAATTCGTTTTGTAAGCTTGATGAAAAGCCGTGCCCCTATCCTTTTAGG----TAATCCTACAGCACTTTACATAACGGGTTCCCTAGAGGCGAGTGTGGTTATTGTACTAATGGCATGAGCCAGAATAATCATCCAGTTA--GTCAAGCAGAGAAAAGTGCTCCTGGAATG-ACCCGAACAATGGGCCAAGCAG--TTCAAATCCCTA----GGTTAGTTGGGCTTGCTGG-------------GTTTTATAAGAGCAGGAATGCCTGCTCAATATTTCTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82514707 323 + 85787240 -aggaaataagtcttaagccaaattctgccatacttacagacacgtgt-----agctgaccggaagagtcctccaattcgttttgtaagcttgatgaaaagccatgcccctatccttttagg----taatcctacagcactttacataacggtttccctagaggcgagtgtggttattgcactaatgacatgagccagaataatcatccagtta--gtcaagcagagaaaagtgctcctggaatg-acccgaacagtggaccaagcag--ttcaaatcccta----ggttaactgggcttgctgg-------------gttttataagagcaggaatgcccgctccatatttcta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14196047 317 - 49578535 -aggaaataagtcttaaaccaacttctgccacacttacaaac--gtgt-agcaagctgacaggtaaagtcacgcaattcgttttgtaaccgtgatgaaaagccgtggccctatttttatagg----cagtcctacagcactttacataaaggacaccctagaggcaaatctggttattgctctaatggcatgagtcag-ataatcatccagttaacgtcaagcagagagaagtgctccTGTAAC---------CAATAGACCACTCAG--GTGAAGTCCCTG----GGTCAATTGGGCTTGCTGG-------------GTTTtacaaaagcgaaaatgcttgctcagta-ttcta i calJac3.chr19 C 0 C 0 s canFam3.chr7 36348744 333 + 80974532 aagaacataaatctaaaaccaaattctgccatagttacaaac--gtgttagcaagctggcagaacgagttatatgatctgttctgtaaacttgatgaagagtcacttccctgttcttttaggcatacactctcactgcaccttgcatgaagaact-gctagagttaggcg-----------ctaatgtcatggttttg-atcatcatttagttaaaggtaggcaaa--aaaatcctcttgtaagatatctgaacaatggacaaatcaggcttctaaaccaca----gactaattgggcttgctggattcttatatactgttttacaagagcaagagtg-ctacttagtaattcta i canFam3.chr7 C 0 C 0 e mm10.chr1 178780654 4726 + 195471971 I a score=1929176.000000 s hg38.chr1_KI270759v1_alt 187710 615 + 425601 gccaatcactatatcttgaacataaccattttcaccaaagaaaaataatttct-aactgccatgattccagttaa-----actctgccgttgaccagtaatagagatagccaaggca-gcgtggcaacggcctttggagtgtaaccttctga--tgagactctcagatgataactTGGACTGGCCTAGGCACTGAGCAATCAGAACAGATTCTGGCCTCAGCTGATGCTGTGCA--GAAGCTTCCTACTGAGCCAGAATTGTCtcagagagctgccaaggcaaccaggtcttgagtggccaagatctgagatagaaggg----aact-atagagagtggagaaggtgcttttctctccctgttcatctgctgagaaggcagcagaacttttggcagtataatgaggcttaaaagacaaaatttgggattcagacctgccaaggcggacaagac----ttaagagatcaaga---------tcctgggagg----aagagacagaaaagtgaactggatactccagtcgttgtcccctttgaagcatttgccaaatattagactg--tatactgcaagag--------actaagcaaaaaaacc-attttt-----agtggagttct---cagtatcacagtgctaagtggaaaaaaaaaaa--tcacat s panTro4.chr1 224940829 617 + 228333871 gccaatcactatatcttgaacataaccattttcaccaaagaaaaataatttct-aactgccatgattccagttaa-----actctgccgttgaccagtaatagagatagccaaggca-gcgtggcaacggcctttggagtgtaaccttctga--tgagactctcagatgataactTGGACTGGCCTAGGCACTGAGCAATCAGAACAGATTCTGGCCTCAGCTGATGCTGTGCA--GAAGCTTCCTACTGAGCCGGAATTGTCtcagagagctgccaaggcaaccaggtcttgagtggccaagatctgagatagaaggg----aact-atagagagtggagaaggtgcctttctctccctgttcatctgctgagaaggcagcagaacttttggcagtataatgaggcttaaaagacaaaatttgggattcagacctgccaaggtagacaagac----ttaagagatcaaga---------tcctgggagg----aagagacagaaaagtgaactggatactccagtcgttgtcccctttgaagcatttgccaaatattagactg--catagtgcaagag--------actaagcaaaaaaccccattttt-----agtggagttct---cagtatcacagtgctaagtggaaaaaaaaaaa-atcacat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226298863 617 - 229942017 gccaatcactgtatcttgaacataaccattttcaccaaagaaaaataacttct-aactgccatgattccaattaa-----actctgctgttgaccagtaatagagatagccaaagca-gcgtggcaacggcctttggaatgtaaccttctga--tgagactctcaggtgataactTGGGCTGGCGTAGGCACTGAGCAATCAGAACAGATTCTGGCCTCAGCTGATGCTGTCCA--GAAGCTTCCTACTGAGCCGGAATTGTCtcagagagctgccaaggcaaccaggtcttgagaggctaagatctgagatagaaggg----aact-atagagagtggagaaggtgcttttctctccctgttcatctgctgagaaggcagcagaccttttggcagtgtaatgaggcttaaaagacaaaatttgggatttagacctgccaaggtagacaagac----ttaagagatcaaga---------tcctgggagg----aagagacagaaaagtgaactggatactccagtagctttcccctttgaagcatttgccaaatattagactg--tatagtgcaagag--------actaagcaaaaaaacc-atttta-----agtggagttct---cagtatcacagtactaactgaaaaaaaaaaaaaatcacat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140188792 619 - 143122389 gccaatcactgtatcttgaacataaccattttcaccaaagaaaaataatttct-aacttccatgattctaatgaa-----actctgccgttgaccagtaatagagatagccaaagca-gcgtggcaacggctcttggagtgtaaccttctga--tgagactcttagatgataactTGGACTGGCATAGGCACTGAACAATCAGGACAGATTCTGGCCTCAGCTGATGCTATACA--GAAGCTTCCTACTGAGCCAGAATTGTCtcagagagctgccaaggcagccaggtcttgagtggccaagatctgagacagaaggg----aact-acagagagtggagaaggtgcttttctctccctgttcatctgctgagaaggcagcagaccttttggcggtataatgaggcttaaaagacaaaatttgggattTagacctgccaaggtagacaagacttaattaagagatcaaga---------tcctgggagg----aagagacagaaaagtgaactggacactccagtagttttaccctttgaagcatttgccaaatattagcctg--tatagtgcaagag--------actaagcaaaaaactc-atttta-----agtggagttct---cagtatcactgtgctaagtggaaaaaaaaaaa--tcacat i nomLeu3.chr5 I 314 C 0 s rheMac3.chr1 16903026 618 - 229590362 gccaatcactatatcttgaacataaccatgtgcaccacagaaaaataatttct-aacttccatgattccagttaa-----cctctgccgttgaccagtaatagagatagccaaagca-gtgtggcaacagccttcggaatgtaaccttctga--tgagactctcagatggtaactTGGACtggcataggcactgagcaatcagaacagattctggcctcagctgatgctgtaca--gaagcttcctactgagccagAATTGTCtcagagagctgccgaggcaaccaggtcttgtgtagctaagatctgagacagaaggg----aact-atagagagtggagtaggcacttttctctccctgttcatctgctgagaaggcagcagaccttttggtggtatcatggggtttaagagacaaaatttggggttcagacctgccaaggtagacaagac----ttaagagattaaga---------tcctgggagg----aagagacaaaaaagtgaactggatgctccagtggttttctcctttgaagcatttgccaaatcttaggctgtatatagtgcaagag--------actaagcaaaaaaacc-attgta-----agtggcatttt---cagtatcacagtgctaagtc-aaaaaaaaaaaaatcacat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223666335 619 - 227556264 gccaatcactatatcttgaacataaccatgtgcaccacagaaaaataatttct-aacttccatgattccagttaa-----cctctgccgttgaccagtaatagagatagccaaagca-gtgtggcaacagccttcggaatgtaaccttctga--tgagactctcagatggtaactTGGACTGGCATAGGCACTGAGCAATCAGAACAGATTCTGGCCTCAGCTGATGCTGTACA--GAAGCTTCCTACTGAGCCAGAATTGTCtcagagagctgccgaggcaaccaggtcttgtgtagctaagatctgagacagaaggg----aact-atagagagtggagtaggcacttttctctccctgttcatctgctgagaaggcagcagaccttttggtggtatcgtggggtttaagagacaaaatttggggttcagacctgccaaggtagacaagac----ttaagagattaaga---------tcctgggagg----aagagacaaaaaagtgaactggatgctccagtggttttctcctttgaagcatttgccaaatcttaggctgtatatagtgcaagag--------actaagcaaaaaaacc-attgta-----agtggcatttt---cagtatcacagtgctaagttaaaaaaaaaaaaaatcacat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16716696 620 - 220367699 GCCAATCACTATATCTTGAACATAACCATGTGcaccacagaaaaataatttct-aacttCCATGATTCCAATTAA-----CCTCTGCCGTGGACCAGTAATAGAGATAGCCAAAGCA-GCGTGGCAACAGCCTTCGGAATGTAACCTTCTGA--TGAGACTCTCAGATGGTAACTTGGACTGGCATAGGCACTGAGCAATCAGAACAGATTCTGGCCTCAGCTGATGCTGTACA--GAAGCTTCCTACTGAGCCAGAATTGTCTCAGAGAGCTGCCGAGGCAACCAGGTCTTGCGTAGCTAAGATCTGAGACAGAAGGGAACTAACT-ATAGAGAGTGGAGTGGGCACTTTTCTCTCCCTGTTCATCTGCTGAGAAGGCAGCAGACCTTTTGGTGGTATCATGGGGTTTAAGAGACAAAATTTGGGGTTCAGACCTGCCAAGGTAGACAAGAT----TTAAGAGATTAAGA---------TACTGGGAGG----AAGAGACAAAAAAGTGAACTGGATGCTTCAGTGGTTTTCTCCTTTGAAGCATTTGCCAAATCTTAGGCTGTATATAGTGCAAGAG--------ACTAAGCaaaaaaaCC-ATTGTA-----AGTGGCATTTT---CAGTATCACAgtgctaagtt---aaaaaaaaaaatgacat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82515030 615 + 85787240 gccagtcactttatcttgaacataaccatgtgcaccacagaaaaataatttct-aacttccatgattccaattaa-----cctctgcctttgaccagtaatagagatagccaaagca-gcgtggcaacagccttcggaatgtaaccttctga--tgagactctcagatggtagctTGGACTGGCATAGG-ACTGAGCAATCAGAACAGATTCTGGCCCCAGCTGATGCTGTACA--GAAGCTTCCTACGGAGCCAGAATTGTCTCTGAGAGCTGCCGAGGCAAGCAGGTCTTGCATAGCTAAGATCTGAGATAGAAGGC----AACT-ATAGAGAGTGGAGTAGGCACGTTTCTCTCCCTGTTCATCTgctgagaaggcagcagatcttttggtggtatcgtgaggtttaagagacaaaatttggggttcagacctgccaaggtagacaagac----ttaagagattaaga---------tcctgggagg----aagagacaagaaggtgaactggatactccagtgattttctcctttgaagcatttgccagatattaggctg--tacagtgcaagag--------actacgcaaaaaaaac-atttta-----agtggcatttt---cagtatcacagtg-taagttaaaaaaaaaaaaaatgacat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14196364 600 - 49578535 gccaatccccagaccttgaacataaccatttgcaccaaagaaaaataatttct-aacttccatgattccaattaa-----cctctgctgttcaccagtactagagatagccaaagca-gcgtggcagcggcctttagaatggccccttctga--tgagactctcagatAACGACTT-GACTGGTATCAGCACTGAGCGATCAGAACAGATTCTGGCCT---CCGATGCTGTGCG--GAAGCTTCCTACTGAGCCAGAAGTGTCTCAGGGAGCAGCCAAGGCAACCAGCCCTTACGTAGCTAAGGTCTGAGATAGAAGGG----CACTAATAGAGTGTGGAGAAGACGCTTTTCTCT-CTTGCTCACCTGCTGAGAAggca---------------gtataatgaggctgaagagacaaaatttggggttcggacctgccaa-atagacaaggc----TTCAGAGATCAAGACTTTCTTCCTCCTTGGAggaagaaagagacagaaaagtgaa-tggatactctagtagttttcccctttgaagcatttgccaaatatcag-ctg--tacagtgcaagag--------actaa-ccaaaaaccc-gtttta-----agtggagttct---cagtatcacagtgctaag-------aaaaaaaaatcgcat i calJac3.chr19 C 0 I 3568 s canFam3.chr7 36349077 627 + 80974532 gccagtccatgattcttgaacacaatcatttt-atcaaagaaaaatcacttctaaatttacattattctgattgacaatgcctctgttgtggactagtaataaagatagtcaaagcatttgtagtaactgcctctggagtgtgaccttccaaatagagtctttcttataataacttggactggcttaggcactgaccaatcagaacagattctggtctcagccaatgccagataatggaggcccctcctgagccagAGATGCCCcaaagggcaaccaaggcaa-taggacttgagtaacaaagatctgagagaaaagaa----aact-atagagagttgagatgatgcttttctctcttaggtcatctgctgagaatacagcagaccttctggcattatcatagagccaaagaggcaaaagtttgagttcagggctgacacggtaggcaggcc----ttgaggggtcaaga---------ttgaggagagaaagaaggcatagagaagtcggctcaatatacccgtagttttccccttagaagcatttgccagatgtta--ctg--tacagaacaagagattaaaccactaagcaaaaaggcc-ctgaaaagaagagcagagtttttagtagtatcacagtgctcactaaaa----------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178780654 4726 + 195471971 I a score=1561682.000000 s hg38.chr1_KI270759v1_alt 188325 662 + 425601 ggcggggtgcggtggcttatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagccatcaccaacatggtgaaaccccgtctctactaaaaatacagaaacttagctgggcatggtggtgggagcctgtaatcccagatactcgggagactgaggcaggagaatcacttgaacctgggaggcggaggttacagtgagccaagattgtgccattgcactccaccctgggcaacaagaccaaaactctgtctcaaacaaacaaacaaac---aaaaaac-aatcacattcaaagcttagccaggagaaaaggcgctaggagataccccactgggatccttgaagaatcataacctaaaaatagatgtgaacctgaagtaga-caagcgatacaaaatctcagtgagctcagtctgggattggtttagcttgatca-------ctccca------ttca-gctgcctaccagaggactgggcgaacgatcactgaagaaagat---------gggagtctctacctttctcataagttgtttcaatgaaaaatgatcaagcataccaagaaataagcctaaaa--gaaaaaaaataggcactggaaagatacccata--------atttactggcattatcagacataaatttcaaaatatctgtgatt s panTro4.chr1 224941446 658 + 228333871 ggcggggtgcagtggctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagccatcaccaacatggtgaaaccccgtctctactaaaaatacaaaaacttagctgggcatggtggtgggagcctgtaatcccagatactcaggagactgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagccaagatcatgccattgcactccaccctgggcaacaggaccaaaactctgtctcaaacaaacaaacaaa-------aaac-aatcacattcaaagcttagccaggagaagaggcactaggagataccccactgggatccttgaagaatcataacctaaaaatagatgtgaacctgaagtaga-caagcgatacaaaatctcagtgagctcagtctgggattggtttagcttgatca-------ctccca------ttca-gctgcctaccagaggactgggtgaacgatcactgaagaaagat---------aggagtgtctacctttctcataagttgtttcaatcaaaaatgattaagcataccaagaaataggcctaaaa--gaaaaaaaataggcactggagagatacccata--------acttagtggcattatcagacataaatttcaaaatatctgtgatt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226299480 659 - 229942017 ggccgggtgcggtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagtttgagaccagccatcaccaacatggtgaaaccccgtctctactaaaaatacaaaaacttagccgagtgtggtggtgggcgcctgtaatcccagctactctggagactgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagccaagatcgtgccattgcactccaccttgggcaataagaccaaaactctgtctcaaacaaacaaacaaa-------aaac-aatcacattcaaagcttagccaggagaagaggcactaggagataccccactgggatccttgaagaatcataacctaaaaatagatgtgaacctgaagtaga-caagcgatacaaaatctcagtgagctcagtctgagattggtttagcttgatca-------ctccca------ttca-gctgcctaccagaggactgggcgaacgatcactgaagaaagat---------aggagtctctacctttctcataagttgtttcaatcaaaaatgatcaagcataccaagaaataggcctaaaag-gaaaaaaaataggcactggaaagatacccata--------atttaccggcattatcagacataaatttcaaaatatctgtgatt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140189411 658 - 143122389 ggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcagatgaatcacctgaggtcaggagtttgagaccagccattaccaacatggtgaaactccatctctactaaaaatacaaaaacttagccgggcatggtggtgggcacctgtaatcccagctactcgggagactgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagccaagatcgtgccattgcactccaccctgggcaacgagaccaaaactctgtctcaaacaaacaaacaaa-------aaac-aatcacattcaaagcttagccaggagaagaggcactaggagataccccactgggatccttgaagaatcataccctaaaaatagatgtgaacctgaagtaga-caagtgatacaaaatctcagtgagctcaggctggagttggtttagcttgatca-------ctgcca------ttca-gctgcctaccagaggactgggcgaataatcactgaagaaagat---------gggagtctctacctttctcatgagttgtttcaatcaaaaatgatcaagcataccaggaaataggcctaaaa--ggaaaaaaataggcactggaaaaatacccata--------atgtaccagcattattagacctaaatttcaaaatatctgtgatt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16903644 666 - 229590362 ggccgggcgcggtggctaacaccgggaatcccagcactttgggaggccgaggtggggggatcacctgaggtcaggagtttgagatccgcc-tggccaacatggtgaaaccccgtctctattagaaatacaaaaacttagccgggtgtggtgccgggcacctgtaatcccatctactcgggagaccgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagccaagatcatgccattgcgctccagcccgggcaacaagacccaaactctgtctcaaacaaacaaacaaatcaacaaaaaa-aatcacattcaaagcttagtgaggagaagaggcactaggagataccccactgggatccttgaagaatcataccctaaaaatagatgtgaacctgaagtaga-caagcaatacaaaatctcagtgagctcagtctgggattggtgtagcttgatca-------ctccca------ttcaggctgcccaccagaggactgggtgaatgatcactgaagaaagat---------aggagtctctacatttcccataagttgtttcaatcaaaaatgatcaagcataccaagaaataggcctaaaag-aaaaaaaaataggcattggaaaaatacccgtg--------gtttaccagcattatcagacataaatttcaaaatatctgtgatt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223666954 666 - 227556264 ggccgggcgcggtggctcacacctggaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagcc-tggccaacatggtgaaaccccatctctattagaaatacaaaaacttagccgggtgtggtgccgggcacctgtaatcccatctactcgggagaccgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagccaagatcatgccattgcgctccagcccgggcaacaagacccaaactccgtctcaaacaaacaaacaaatcaacaaaaaa-aatcacattcaaagcttagtgaggagaagaggcactaggagataccccactgggatccttgaagaatcataccctaaaaatagatgtgaacctgaagtaga-caagcaatacaaaatctcagtgagctcagtctgggattggtgtagcttgatca-------ctccca------ttcaggctgcccaccagaggactgggtgaatgatcactgaagaaagat---------aggagtctctacatttcccataagttgtttcaatcaaaaatgatcaagcataccaagaaataggcctaaaag-aaaaaaaaataggcattggaaaaatacccgtg--------gtttaccagcattatcagacataaatttcaaaatatctatgatt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16717316 667 - 220367699 ggccgggcgcggtggctcacacctggaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagcc-tggccaacatggtgaaaccccatctctattagaaatacaaaaacttagccgggtgtggtggcgggcacctgtaatcccatctactcgggagaccgaggcaggagaatcacttgaacctgggaggcggaggttgcagtaagccaagatcatgccattgcgctccagcccgggcaacaagacccaaactccgtctcaaacaaacaaacaaatcaacaaaaaa-aatcacattcaaaGCTTAGTGAGGAGAAGAGGCACTAGGAGATACCCCACTGGGATCCTTGAAGAATCATACCCTAAAAATAGATGTGAACCTGAAGTAGA-CAAGCAATACAAAATCTCAGTGAGCTCAGTCTGGGATTGGTGTAGCTTGATCA-------CTCCCA------TTCAGGCTGCCCACCAGAGGACTGGGTGAATGATCACTGAAGAAAGAT---------AGGAGTCTCTACATTTCCCATAAGTTGTTTCAATCAAAAATGATCAAGCATACCAAGAAATaggcctaaaagaaaaaaaaaataggcattgGAAAAATACCCGTA--------GTTTACCAGCATTATCAgacataaatttcaaaatatctgtGATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82515645 667 + 85787240 ggccgggtgcggtggatcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagcc-tggccaacatggtgaaaccccgtctctattagaaatacaaaaacttagccgggtgtggtggcgggcacctgtaatcccatctactcgggagactgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagccaagatcatgccattgcattccagcctgggcaacaagacccaaactccgtctcaaataaacaaacaaatcaacaaaaaacaatcacattcaaagcttagccaggagaagaggcactaggagataccccactgggatccttgaagaatcataccctaaaaatagatgtgaacctgaagtaga-caagcgatacaaaatctcagtgagctcagtctgggattggtgtagcttgatca-------ctccca------ttcaggctgcccaccagaggactgggtgaatgatcactgaagaaagat---------aggagtctctacatttcccataagttgtttcaatcaaaaatgatcaagcataccaagaaataggcctaaaag-aaaaaaaaataggcattggaaaaatacccgta--------gcttaccagcattatcagacataaatttcaaaatatctgtgatt i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36349704 382 + 80974532 -----------------catgctggcattcaaagc-------------------------ccacctagg----------------------------------------------------agaa-----------------gatgtgctagcaaatacctgt------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tggggatctttgatgagctacaccctaggactggaagtaaacccaaagtagaccaaaccatataaaacctcattg-----agtctttgattgggttttggtgatcaaaccccccccccacctgctttcagcctgcctaccagaggataaggtgaaccattgctgaaggaagatagtattttcagtagtgtctaaagttttcat-atttttttcaatcaaaaattaccagacataatagaaaataggtccatga--gaaataaaataggtaatggagaaatatccatgaatgacccaattattggcatta-cagatatagtctttaaaattacggtgcct i canFam3.chr7 C 0 I 478 e mm10.chr1 178780654 4726 + 195471971 I e calJac3.chr19 14196964 3568 - 49578535 I a score=823912.000000 s hg38.chr1_KI270759v1_alt 188987 336 + 425601 catatgttcaggaagataaatgatacaataaagaatttcaccagaaaatgggaattcataaaaagaaactggggccaggcgtggtggctcacacctgtgtaatcacagcattttgggaggctgagttgggcagatgacttgatcccaggagtccaagaccagcctaggcaacacggtgaaactctgtctctataaaaaatacaaaaattagccaggcatggtggcgcacacctgtagtcccagctacttgggaggctgaggtgggaggatcacctgagcctgggaggtcaaggttgcagtgagtcaacttcacttcagcctgagtgacagagatcc s panTro4.chr1 224942104 336 + 228333871 catatgttcaggaagataaatgatacaataaagaatttcaccagaaaattggaattcataaaaagaaactggggccaggcgtggtggctcacacctgtgtaatcacagcattttgggaggctgagttgggcagatgacttgatcccaggagttcaagaccagcctaggcaacatggtgaaactctatctctataaaaaatacaaaaattagccaggcgtggcagcgcacacctgtagtcccagctacttgggaggctgaggtgggaggatcacctgagcctgggaggtcaatgttgcagtgagtcaacttcacttcagcctaagtgacagagatcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226300139 336 - 229942017 catatgtttaggaagataaatgatacaatgaagaatttcaccagaaaattggaattcataaaaagaaactggggccaggcgtggtggctcacacctgtgtaatcatagcattttgggaggctgaggtgggcagatggcttgatcccaggagttcaagaccagcctaggcaacatggtgaaactctatctctataaaaaatacaaaaattagccaggcgtggtggcgcacacctgtagttccagctacttgagaggctgaggtgggaggatcacctgagcctaggaggtcaaggttacagtgagtcaatttcacttcagcctgagtgacagagatcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140190069 331 - 143122389 cataagttcaggaagataaatgatacaacaaagaatttcaccagaaaattggaattcataaaaagaaactggggccgggtatggtggctcacacctgtgtaatcacagcattttgggaggctgag-tgggcagatggcttgatcccaggagttcaagaccagcctaggcaacatggtgaaactcta----tataaaaaatacaaaaattagccaggcatggtggtgcacacctgtagtcccagctacttgggaggctgaggtgggaggatcacctgagcctgggaggtcaaggttgcagtgagtcaacttcacttcagcctgggtgacagagatcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16904310 336 - 229590362 catatgttcaggaagataaatgatacaatacagaatttcaccagaaaattggaattcataaaaagaacctggggctgggcgtagtggctcacacctgtgtaatcacagcatgttaggaggctgaggtgggcagatggcttgatcccaggagttcaagaccagcgtaggcaacatggtgaaactctgtctctatacaaaatacaaaaattagccaggcatggtggcacacacctgtagtcccagctacttgggaggctgaggtgggaggatcacctgagcctgggaggtcaaggttgcagtgagtcaacttcacttcagcctgggtgacagagatcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223667620 336 - 227556264 catatgttcaggaagataaatgatacaatacagaatttcaccagaaaattggaattcataaaaagaacctggggctgggcgtggtggctcacacctgtgtaatcacagcattttaggaggctgaggtgggcagatggcttgatcccaggagttcaagaccagcgtaggcaacatggtgaaactctgtctctatacaaaatacaaaaattagccaggcatggtggcacacacctgtagtcccagctacttgggaggctgaggtgggaggatcacctgagcctgggaggtcaaggttgcagtgagtcaacttcacttcagcctgggtgacagagatcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16717983 336 - 220367699 CATATGTTTAGGAAGATAAATGATACAATACAGAATTTCACCAGAAAATTGGAATTCATAAAAAGAacctggggctgggcgtggtggctcacacctgtgtaatcacagcattttaggaggctgaggtgggcagatggcttgatcccaggagttcaagaccagcgtaggcaacatggtgaaactctgtctctatacaaaatacaaaaattagccgggcatggtggcacacacctgtagtcccagctacttgggaggctgaggtgggaggatcacctgagcctgggaggtcaaggttgcagtgagtcaacttcacttcagcctgggtgacagagatcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82516312 335 + 85787240 catatgttcaggaagataaatgagacaatacagaatttcaccagaaaattggaattcataaaaagaacctggggctgggcgtggtggctcacacctgtgtcatcacagcat-ttaggaggctgaggtgagcagatggcttgatcccaggagttcaagaccagcgtaggcaacatggtgaaactctgtctctatacaaaatacaaaaattagccaggcatggtggcacacacctgtagtcccagctacttgggaggctgaggtgggaggatcacctgagcctgggaggtcaaggttgcagtgagtcaacttcacttcagcctggctgacagagatcc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178780654 4726 + 195471971 I e canFam3.chr7 36350086 478 + 80974532 I e calJac3.chr19 14196964 3568 - 49578535 I a score=755320.000000 s hg38.chr1_KI270759v1_alt 189323 309 + 425601 tgtctcacaaaagagaaaagaaaagaaaagaaa-taaagaaaagaaaagaaagaggaaattctggaactt-aaaaaatgaaataatggatattaagaacacaacaagtggatctaatagc-agattagatttagtacaagacagattcagtgaaatggaatgcaaatcagttgaaaatatccagagagatacatggagaacaaaaaggatcaaaatacagaaaagagcagaagagacata-tggaacacat-gtaacatataa----ttgaaggcct--------ggaagaggggaagagggaatgaggcagaagcaatatatttt s panTro4.chr1 224942440 304 + 228333871 tgtctcacaaaagagaaaagaaaagaaa------taaagaaaagaaaagaaagaggaaattctggaactt-aaaaaatgaaataatggatattaagaacacaacaagtggatctaatagc-agattagatttagtacaagacagaattagtgaaatggaatgcaaatcagttgaaaatatccagagagatgcatggagaacaaaaaggatcaaaatacagaaaagagcagaagagacata-tggaacacat-gtaacatataa----ttgaaggcct--------agaagaggggaagagggaatgaggcagaagcaatatatttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226300475 304 - 229942017 tgtctcacaaaagagaaaagaaaagaaa------agaaataaagaaaagaaagaggaaattctggaactt-aaaaaatgaaataatggatattaagaacacaacaagtggatctaatagc-agattagatttagtacaagacagaattagtgaaatggaatgcaaatcagttgaaaatatccagagagatgcatggagaacaaaaaggatcaaaatacagaaaagagcagaagagacata-tggaacacat-gtaacatataa----ttgaaggcct--------ggaagaggggaagagggaatgaggcagaagcaatatatttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140190400 309 - 143122389 tgtctcac-aaaGagaaaagaaaagaaaagaaataaaagaaaagaaaagaaagaggaaattctggaactt-aaaaaatgaaataatggatattaagaacacaacaagtggatctaatagc-agattagatttagtacaagacagagttagtgaaatggaatgcaaatcagttgaaaatatccagagagatgcatggagaacaaaaaggatcaaaatacagaaaagggcagaagagatata-cggaacacat-gtaacatataa----ttgaaggccc--------agaagaggggaagagggaatgaggcagaagcaatatatttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16904646 307 - 229590362 tgtctcacaaaagagaaaagaaaagaaa-----------agaagaaaagaaagaggaaattctggagctt-aaaaaatgaaataatggatattaagaacacaacaagtggctctaatagc-aggttagatttagtacaagacagaattagtgaaatggaatacaaatcagttgaaaatatccagagagatgcagggagaacaaaaaggatcaaaacacagaaaagagcagaagagacgta-tggaacacat-gtaacatataa----tggaaagcccggaagaggggaagaggggaagagggaatggggcagaagcaatgtctttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223667956 299 - 227556264 tgtctcacaaaagagaaaagaa-------------------aagaaaagaaagaggaaattctggagctt-aaaaaatgaaataatggatattaagaacacaacaagtggctctaatagc-aggttagatttagtacaagacagaattagtgaaatggaatacaaatcagttgaaaatatccagagagatgcagggagaacaaaaaggatcaaaacacagaaaagagcagaagagacgta-tggaacacat-gtaacatataa----tggaaagcccggaagaggggaagaggggaagagggaatggggcagaagcaatgtctttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16718319 288 - 220367699 tgtctcacaaaagagaaaagaa-------------------aagaaaagaaagaggaaattctggagctt-aaaaaatgaaataatggataTTAAGAAC---ACAAGTGGCTCTAATAGC-AGGTTAGATTTAGTACAAGACAGAATTAGTGAAATGGAATACAAATCAGTTGAAAATATCCAGAGAGATGCAGGGAGAACAAAAAGGatcaaaacacagaaaagagCAGAAGAGACGTG-TGGAACACGT-GTAACATATAA----TGGAAAGCCC--------AGAAGAGGGGCAGAGGGAATGGGGCAGAAgcaatgtctttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82516647 292 + 85787240 tgtctcacaaaagagaaaagaa-------------------aagaaaagaaagaggaaattctggaacttaaaaaaatgaaataatggatattaagaacacaacaagtggatctaatagc-aggttagatttagtacaagacagaattagtgaaatggaatacaaatcagttgaaaatatccagagagatgcaaggagaacaaaaaggatcaaaatacagaaaagagcagaagagacgta-tggaacatat-gtaacatataa----tggaaagccc--------agaagaggagcagagggaatggggcagaagcaatgtctttt i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36350564 275 + 80974532 tgtctctc---------------------------------atgaataaataagtaaaat-------ctt-aaaaaat--aataatacatagtaagaactcagtagatatatttaactgcaagactggatgcattacaagaaagaataagggaaatgcaatacagaccagtaaaagatacccaggtggatgcatagagagcaaaaatgatgaaaatacagaaaagagcatggaacatatattagtccatataacaacatgtaattggttggagtcca--------agaaaaaggcaagaagaaataaggcagaagaaatattttct i canFam3.chr7 I 478 I 40 e mm10.chr1 178780654 4726 + 195471971 I e calJac3.chr19 14196964 3568 - 49578535 I a score=927143.000000 s hg38.chr1_KI270759v1_alt 189632 409 + 425601 tctttttctttttagttgacacataataattgtacatatttgtaggtacatatttataggatacaaagtgatgattttggtataggtgtacaatgtgtactgatcaaatcatggtaatcagcatatctatcaactcaaacatttatcatgtctttgtgttgtggacattgaaaatcttttcttctagctttttgaaaacatacaataaatcatcattaaccatattcacctgagagtgctgcaggatgccagaactccttcctcctacatagctataatttggtctatagtttggtatccattaatgaacctctccccatccacctctccttcctacctttctcagcctctaacacctaaaattctact-tcaaaatgtgatttaagaagccctggcttgccccaaccag s panTro4.chr1 224942744 408 + 228333871 tctttttatttttagttgacacataataattgtacatatttgtaggtacatatttataggatacaaagtgatgattttggtataggtatacaatgtgtaatgatcaaatcatggtaattagcatatctatcaactcaaacatttatcatgtctttggattgtggacattgaaaatcttttcttctagctttttgaaa-catacagtaaatcatcgttaaccatattcgcctgagagtgctgcaggacaccagaactccttcctcctacatagctataatttggtctatagtttggtatccattaacgaacctctccccatccacctctccttcctacctttctcagcccctaactcctacaattctact-tcaaaacgtgatttaagaagccgtagcttgccccaaccag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226300779 395 - 229942017 tctttttttttttagttgacacataataattgtacatatttg--------------taggatacaaagtgatgattttggtatagctatacaatgtgtaatgatcaaatcatggtaattagcatatctatcaactcaaacatttatcatgtctttgtgttgtggacattgaaaatcttttcttctagctctttgaaaacatacagtaaatgatcgttaaccatattcacctgaaagtgctgcaggacgccagaactccttcctcctacatagctataatttggtctatagtttggtatccattaacgaacctctccccatccacctctccttcctacctttctcagcctctgacacctacaattatact-tcaaaacgtgatttaagaagccctggcttgccccaaccag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140190709 408 - 143122389 tctttttctttttagttgacacataataattgtacgtatttgta-gtacatatttataggatacaaagtgttgattttggtatagatatacaatgtgtaacgatcaaatcatggtaattagcatatctatcaactcaaacatttgtcatgtctttgtgttgtggacattgaaaatcttttcttctagctttttgaaaacatacaatacatcatcgttaaccatattcacctgaaagtgctacagggcgccagaactccttcctcctacatagctataatttggtctatagtttggtatccattaacgaacctctccccatccacctctccttcctacctttctcagcctctaacgcctacaattctact-tcaaaacgtgatttaagaagccctggcttgccccaaccag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16904953 395 - 229590362 tcattttctttttaattgacacataataattgtacatattta--------------taggataaaaagtgatgattttggtataggtatacaatgcgtaatgatcaaatcatggtaattagcatatatatcaactcaaacatttatcatgtctttgtgttgtggacattcaaaatctttttttctagctttttgaaaacatacaataaatcatcagtaaccatattcgcctgaaagtgctgccgaacaccagaactccttcctcctacttagctataattgggtctgtaatttggtatctgttaacgaacctctccccatccacctctccttcctacctttctcagcctctaacgcctacaattctact-tcagaacatgatttaagaagccctggcttgccccaactag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223668255 395 - 227556264 tcattttctttttaattgacacataataattgtacatattta--------------taggataaaaagtgatgattttggtataggtatacaatgcgtaatgatcaaatcatggtaattagcatatatatcaactcaaacatttatcatgtctttgtgttgtggacattcaaaatctttttttctagctttttgaaaacatacaataaatcatcattaaccatattcgcctgaaagtgctgccgaacaccagaactccttcctcctacttagctataattgggtctgtaatttggtatctgttaacgaacctctccccatccacctctccttcctacctttctcagcctctaacgcctacaattctact-tcagaacatgatttaagaagccctggcttgccccaactag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16718607 395 - 220367699 tctttttctttttagttgacacataataattgtacatattta--------------taggataAAAAGTGATGATTTTGGTATAGGTATACAATGCgtaatgatcaaatcatggtAATTAGCATATATATcaactcaaacatttatcatgtcTTTGTGTTGTGGacattcaaaatctttttttctagctttttgaaaacatacaataaatcATCATTAACCATATTCGCCTGAAAGTGCTGCCGAACACCAGAACTCCTTCCTCCTACATAGCTATAATTGGGTCTGTAATTTGGTATCTGTTAACGAACCTCTCCCCATCCACCTCTCCTTCCTACCTTTCTCAGCCTCTAACGCCTACAATTCTACT-TCAGAACATGATTTAAGAAGCCCTGGCTTGCCCCAACTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82516939 395 + 85787240 tctttttctttttagttggcacataataattgtacatattta--------------taggataaaaagtgatgattttggtataggtatacaatgcgtaatgatcaaatcatggt-attagcatatatatcaactcaaacatttatcatgtctttgtgttgtggacattcaaaatcttttcttctagctttttgaaaacatacaataaatcatcattaaccatattcgcctgaaagtgctgctgaacaccggaaatccttcctcctacatagctataattgggtctgtaatttggtatctgttaacgaacctctccccatccacctctccttcctacctttctcagcctctaacgcctacaattctactctcagaacatgatttaagaagcactggcttgccccaaccag i chlSab2.chr25 C 0 C 0 e mm10.chr1 178780654 4726 + 195471971 I e canFam3.chr7 36350839 40 + 80974532 I e calJac3.chr19 14196964 3568 - 49578535 I a score=779688.000000 s hg38.chr1_KI270759v1_alt 190041 276 + 425601 gatatacacagagaaaaccacagctgggtacaatgtagtaaaactgttgaaaacaaaagccaaggagaaaaa---tgattaaagccgtgagaaaaaaattcattatttttaaaggagcaacactaagac-agtaactcatttctcaacagaaacaatggatgccaagagacaatggaacgtcatattcatgggttgaaagaatgtaaccgtcaacctaaaagtttacaaacttaataaagatattcgtcaaacattgaagtgaaataaagacatttcagg s panTro4.chr1 224943152 276 + 228333871 gatatacacagagaaaaccacagctgggtacaatgtagtaaaactgttgaaaacaaaagccaaggagaaaaa---tgattaaagccgtgagaaaaaaattcattatttttaaaggagcaacaataagac-agtaactcatttctcaacagaaacaatggatgccaagagacaatggaacatcatattcatgggttgaaagaatgtaaccgtcaacctaaaagtttacaaacttaataaagatattcgtcaaacatagaagtgaaataaagacatttcagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226301174 276 - 229942017 gatatacacagagaaaaccgcagctgggtacaatgtagtaaaactgtcgaaaacaaaagccaaggagaaaaa---tgattaaagctgtgagaaaaaaattcattatttttaaaagagcaacaataagac-agtaactcatttctcaacagaaacaatggatgccaagagacaatggaacgtcatattcatgagttgaaagaatgtaactgtcaacctaaaagtttacaaacttaataaagatatttgtcaaacattgaagtgaaataaagacatttcagg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140191117 276 - 143122389 gatatacacagagaaaaccacagctgggtacaacgtagtaaaactgttgaaaacaaaagccaaggagaaaaa---tgattaaagccgtgaaaaaaaaattcattatttttaaaggagcaacaataagac-ggtaactcatttctcaacagaaacgatggatgccaagagacaatggaatgtcatattcatgagttgaaagaatgtaaccatcaacctaaaagtttacaaacttaataaaggtattcgtcaaacattaaagtgaaataaagacatttcagg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16905348 276 - 229590362 gatgtacacagagaaaaccacagctggggacaatgtagtaaaaccattgaaaacaaaagccaaggagaaaaa---tgattacagccgtgagaaaaaaatcgattatttttaaaggagcgacaataagac-aggaatttgtttctcaacagaaacaatggatgccaagagacaatgcgatgtcgtattcatgaattgaaagaatgtaactgtcaacctaaaagtttacaaacttaacaaagatattcatctaacattgaagtgaaataaagacatttcagg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223668650 276 - 227556264 gatgtacacagagaaaaccacagctggggacaatgtagtaaaaccattgaaaacaaaagccaaggagaaaaa---tgattacagccgtgagaaaaaaatcgattatttttaaaggagcgacaataagac-aggaattcgtttctcaacagaaacaatggatgccaagagacaatgggatgttgtattcatgaattgaaagaatgtaactgtcaacctaaaagtttacaaacttaacaaagatattcatcaaacattgaagtgaaataaagacatttcagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16719002 276 - 220367699 GATGTACACAGAGAAAACCACAGCTGGGGACAATGTAGTAAAACCATTGAAAACAAAAGCCAAGGAGAAAAA---TGATTACAGCCGTGAGaaaaaaaTCGATTATTTTTAAAGGAGCGACAATAAGAC-AGGAATTCGTTTCTCAACAGAAACAATGGATGCCAAGAGACAATGGGATGTCGTattcatgaattgaaagaatgTAACTGTCAACCTAAAAGTTTACAAACTTAACAAAGATATTCATCAAACATtgaagtgaaataaagacatttcagg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82517334 276 + 85787240 gatgtacacagagaaaaccacagctggggacaatgtagtaaaaccattgaaaaccaaagccaaggagaaaaa---tgattacagccgtgagaaaaaaatccattatttttaaaggagcaacaataagac-aggaattcgtttctcagcagaaacaatggatgccaagagacaatgggatgtcgtattcatgaactgaaagaatgtaactgtcaacctaaaagtttacaaacttaacaaagatattcgtcaaacattgaagtgaaataaagacatttcagg i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36350879 280 + 80974532 gagacatacagagaaaactacaacagagcatagtgtagtaaaaccactgaaaacaaaaaccagagagaaaaattgtgaatacagccaacaggggataaatcatggttatcaaaggaacaacaataagactcacagctcacttctcaacagaagcagtggatgctagaagacaatggaatgtcatattactatgttgacagaatgtaactgccaaccgaaagctttataaactcagcaaaaatatctgtcaaaaattaaagtgaaataaagatattttGGG i canFam3.chr7 I 40 I 219 e mm10.chr1 178780654 4726 + 195471971 I e calJac3.chr19 14196964 3568 - 49578535 I a score=1661058.000000 s hg38.chr1_KI270759v1_alt 190317 602 + 425601 acaaaaattgaaagaatccatcatcagtagaccaacactaaaagaaatac-taaaaggaagtatacggatagaaagaaaatgatcccagaaatgcaggaaggaatgaaagctgacagaaagggtcaa----catgtggttaagttcaaatgtattaagaatatgagatgtattgatggctggatagagggatggataaatatgtgataaagtaaatgtagaaaaaattttcacatgcagaaatgtggaaaaattaaagaatctggatgaggggcatatgggc-----------cattc-------------------------tatttttg--taaaatgttcagaaaataaatatagggcaaatataaatgaacattgaccatataaaagaacaaaaatggggttttgtgggcactaaaatatatgtagcattaaatgcatgacaaaaacaatacaaaaagtgaaagggg-gtaaagggagttaaagtgtaataaaatcataac---atctggaagtattaaaactcagaattttaccagactataataggtcaaggacacataatgtaatctgtagagcaactagtaaaataatgcataaaagggaaaatagaatgaaaaatacttgattaatctaaaataattcaa s panTro4.chr1 224943428 613 + 228333871 acaaaaattgaaagaatccatcaccagtagaccaacactaaaagaaatac-taaaaggaagtatacggatagaaagaaaatgatcccagaaatgcaggaaagaatgaaagctgacagaaagggtcaa----catgtggttaagttcaaatgtattaagaatatgagatgtattgatggctggatagagggatggataaatatgtgataaagtaaatgtagaaaaaattttcacatgcagaaatgtggaaaaattaaagaatctggatgaggggcatatgggcattcaccataccattc-------------------------tatttttg--taaaatgttcagaaaataaatatagggcaaatataaatgaacattgaccatatgaaagaacaaaaatggggttttgtgggcactaaaatatatgtagcgttaaatgcatgacaaaaacaatacaaaaagtgaaagggg-gtaaagggagttaaagtgtaataaaatcataac---atctggaagtattaaaactcagaattttaccagactatagtaggtcaaggacacataatgtaatctgtagagcaactagtaaaataatgcataaaagggaaaatagaatgaaaaacacttgattaatctaaaataattcaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226301450 614 - 229942017 acaaaaattgaaagaatccatcaccagcagaccaacactaaaagaaatacttaaaaggaagtatacggatagaaagaaaatgatcccacaaatgcaggaaggaatgaaagctgacagaaagggtcaa----catgtggttaagttgaaatgtattaagaatatgagatgtattgatggctggatagagggatggataaatatgtgataaagtaaatgtagaaaaaattttcacatgcagaaatgtggaaaaattaaagaatctggatgaggggcatatgggcattcaccataccattc-------------------------tatttttg--taaaatgttcagaaaataaatattgggcaaatataaatgaacattgaccatatgaaagaacaaaaatgcggttttatgggcactaaaatatatgtagcattaaatgcatgacaaaaacaatacaaaaagtgaaatggg-gtaagtggagttaaagtgtaataaaatcataac---atctggaagtattaaaactcagaattttactagactataataggtcaagaacacataatgtaatctctagagcaactagtaaaataatgcataaaagggaaaatagaatgaaaaatacttgattaatctaaaagaattcaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140191393 608 - 143122389 acaaaaattgaaagaatccatcaccagtagaccaacactaaaagaaatac-taaaaggaagtatacggatagaaagaaaatgatcccagaaatgcaggaaggaatgaaagctgacagaaagggtcaa----catgtggttaagttcaaatgtattaagaatatgagatgtattgatggctggatagagggatggataaatatgtgataaagtaaatgtagaaaaaattttcacatgcagaaatgtggaaaaattaaagaatctggatgaggggcatatgggcattcaccataccattc-------------------------tatttttg--taaaatgttcagaaaataaatatggggcaaatataaatgaacattgaccgtataaaagaacaaaaatgcggttttgtgggcaccaaaatatatgtagcattaaatgcatgacaaaaacaatacaaaaagtgaaagggg-gtaagtggagttaaagtgtaataaaatcataac---atctggaagtattaaaactcagaattttactagactataataggtcaagaacac-----gtaatctctagagcaactagtaaaataatgcataacagggaaaatagaatgaaaaatacttgattaatctaaaagaattcaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16905624 613 - 229590362 acaaaaatggaaagaatctatcaccagtagacgaacactgaaagaaatag-taaaaggaagtatgcagatgagaagaaaatgatcccggaagtgcaggaaggaatgaaagctgacagaaaaggtcaa----catgtggttaagttgaaatgtattaagaatataagatgtattgatggctggatagagggatggataaatatgtgataaagtaaatgtagaaaaaattttcacgtgcagaaatgtggaaaaattaaagaatctggctgaagggcatatgggcattcaccatacaattc-------------------------tatttttg--tgaaatgttcagaaaataaatatggggcaaatataaatgaacattgaccatataaaagaacaaaaatgggattttgtgggcgctaaaatatatgtagcattaaatgcatgacaaaaataatacaggaagtgaaagggg-ataaatggagttaaagtgtaataaaattgtaac---atctgtaagtattaaaactcagaattttattagactataataagtgaaggacacataatgtaatctgcagagcaactagtaaaataatgcataaaagggaaaatagaatgaaaaatacatgattaatctaaaagaattcaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223668926 613 - 227556264 acaaaaatggaaagaatctatcaccagtagacgaacactgaaagaaatag-taaaaggaagtatgcagatgagaagaaaatgatcccggaaatgcaggaaggaatgaaagctgacagaaaaggtcaa----catgtggttaagttgaaatgtattaagaatataagatgtattgatggctggatagagggatggataaatatgtgataaagtaaatgtagaaaaaattttcacgtgcagaaatgtgggaaaattaaagaatctggctgaagggcatatgggcattcaccatacaattc-------------------------tatttttg--tgaaatgttcagaaaataaatatggggcaaatatcaatgaacattgaccatataaaagaacaaaaatgggattttgtgggcgctaaaatatatgtagcattaaatgcatgacaaaaataatacaggaagtgaaagggg-ataaatggagttaaagtgtaataaaattgtaac---atctgtaagtattaaaactcagaattttattagactataataagtgaaggacacataatgtaatctgcagagcaactagtaaaataatgcataaaagggaaaatagaatgaaaaatacatgattaatctaaaagaattcaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16719278 612 - 220367699 acaaaaatggaaagaatctaTCACCAGTAGACGGACACggaaagaaatac-taaaaggaaGTATACAGATAAGAAGAAAATGATCCCGGAAATGCAGGAAGGAGTGAAAGCTG-CAGAAAAGGTCAA----CATGTGGTTAAGTTGAAATGTATTAAGAATATAAGATGTATTGATGGCTGGATAGAGGGATGGATAAATATGTGATAaagtaaatgtagaaaaaattttCACGTGCAGAAATGTGGAAAAATTAAAGAATCTGGATGAAGGGCATATGGGCATTCACCATAcaattc-------------------------tatttttg--tgaaatgttcagaaaataaatatggggcaaatataaatgaacattgaccatataaaagaacaaaaatgggaTTTTGTGGGCGCTAAAATATATGTAGCATTAAATGCATGACAAAAATAATACAGGAAGTGAAAGGGG-ATAAATGGagttaaagtgtaataaaatcgTAAC---ATCTGTAAGTATTAAAACTCAGAATTTTATTAGACTATAATAAGTGAAGGACACATAATGTAATCTGCAGAGCAACTAGTAAAATAATGCATAAAAGgggaaatagaatgaaaaatacatgattaatctaaaagaattcaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82517610 607 + 85787240 acaaaaatggaaagaatctatcaccagtagacgaacactgaaagacata--caaaaggaagtatacagataagaagaaaatgatcccagaaatgcgggaaggaatgaaagctgacagaaagggtcaa----cgtgtggttaagttgaaatgtattaagaatataagatgtattgatggctggatagagggatggataaatatgtgataaagtaaatgtagaaaaaatgttcacgtgcagaaatgtggaaaaattgaagaatctggatgaagggcatatgggcatccaccatacaattc-------------------------tatttttg--taaaatgttcagaaaataaatgtggggcaaatagaaatgaacattggccatataaaagaacaaaaatggtattttgtgggcgctaaaatatatgtagcattaaatgcatgacaaaaataatacaggaagtgaaagggg-ataaatggagttaaagtgtaataaaatcgtaac---atctgtaagtattaaaactcagagttttattagactataagaagtgaaggacacataatgtaatctgcagagcaactagtaaaataatgcataaaagggaaaatagaatgaaaaatacatgat-----taaaagaattcaa i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36351378 621 + 80974532 acaaaaattaaaagaattcatcagcaatagactagcattaaaagaaaaac---aaagtatttatacaggtagaaagaaaatgatcccagaaatgcaggaaa-accaaagagtgacctaaaaagcaaataCTTACATGGTTAAGCtgagatatattaaaaatatataatggatggatgacgggatagagggatggacagataggtgataaaacaaatatagaaaatatt----------------------aagtatacaatctggatgagggttatatgggtattcattggccaattctctcaatttaatttcaaaaaaatcttatcttggaataaaatgttgagaaaa-atatat-gggcaaacataagtgaatattgatcataaaaagcaagaaaaataaggtcatgtgggctctaaaatacatgtagaaatcaacatatgaccagaataatacagaaagtggaagaggtgtaaatagagttaaaggattatgaggttagagccatatccaaaagtattaaaagttatgattttactagactataataggtcaaagacacatattgtgatctccacagtaactagtaaaacaatatgtggaaggggaagtagaatgacaagtatttgatcaatctaaaagaaatcaa i canFam3.chr7 I 219 I 263 e mm10.chr1 178780654 4726 + 195471971 I e calJac3.chr19 14196964 3568 - 49578535 I a score=882358.000000 s hg38.chr1_KI270759v1_alt 190919 324 + 425601 gaaagaagaggaaagagaacataaactaggtggactaatagaaaacaactgtaagatggtagctataaactcaagtatatccgtaattgagttacatgaaaattgactaaatactctaattaaaagataattattgttagactgtattttaaagac--aacaaaatctaattaaatactgcttataagagacgcttcataaatgtaaggacaaaaagaag-----------ttgaagataaaagaatg-a-----aaaaaa-gatataccttgtaaatgccaaccaatataagctggcatagttc---taatataagagaaaatagactttTCAAgaatcatcatga s panTro4.chr1 224944041 325 + 228333871 gaaagaagaggaaacagaacataaactaggtggactaatagaaaacaactgtaagatggtagctatcaactcaagtatatccgcaattgagttacatgaaaattaactaaatactctaattaaaagataattattgttagactgtattttaaagac--aacaaaatctaattaaatactgcttataagagacgcttcataaatgtaaggacaaaaagaag-----------ttgaagataaaagaatg-a-----aaaaaaagatataccttgtaaatgccaaccaatataagctggcatagttc---taatatcagagaaaatagacttttcaagaatcatcatga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226302064 327 - 229942017 gaaagaagaggaaagagaacataaaataggtagactaacagaaaacaactgtaagatggtagctataaactcaaatatatccttaattgagttacatgaaaattgactaaatactctaattaaaagataattattgttacactgtattttaaagac--aacaaaatctaattaaatgctgcttataagagatgcttcataaatttaaggacaaaaagaag-----------ttgaagataaaagaatg-a---ataaaaaaagatataccttgcaaatgataaccaatataagctggcatagttc---taatatcagagaaaatagacttttcaagaatcatcatga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140192001 330 - 143122389 gaaataagaggaaagagaacataaaataggtggactaatagaaaacaactgtaagatggtagctataaactcaaatatatccgtaattgagttacatgaaaattgactaaatactctaattaaaagataattattgttacactgtattttaaagac--aacaaaatctaattaaatactgcttataagagacgcttcataaatttaaggacaaaaagaag-----------ttgaagataaaagaatg-aaaaaaaaaaaaagatataccttgtaaatgctagccaatataagctggcatagttc---taatatcagagaaaataaacttttcaagaatcatcacga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16906237 325 - 229590362 gaaagaagaggaaagagaatataaaataggtggactaatagaaaacaactgtaagatggtagctataaattcaaatatatctgtaattgagttacatgaaaattggctaaatactctaattagaagatagttattgttagac--tattttaaagac--aacaaaatctaattaaatactgcttgtaagatacacttcataaatttaaggacaaaaagaag-----------ttgaagataaaagaatg-a---aaaaaaaaagatataccttgtaaatgccaaccaaaataagctggcatagttc---taatatcagagaaaatagactttTCAAgaatcatcatga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223669539 326 - 227556264 gaaagaagaggaaagagaatataaaataggtggactaatagaaaacaactgtaagatggtagctgtaaattcaaatatatctgtaattgagttacatgaaaattggctaaatactctaattagaagatagttattgttagac--tattttaaagac--aacaaaatctaattaaatactgcttgtaagatacacttcataaatttaaggacaaaaagaag-----------ttgaagataaaagaatgaa---aaaaaaaaagatataccttgtaaatgccaaccaaaataagctggcatagttc---taatatcagagaaaatagactttTCAAgaatcatcatga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16719890 325 - 220367699 gaaagaagaggaaagagaatataaaataggTGGACTAATAGAAAACAACTGTAAGATGGTAGctataaattcaaatatatctGTAATTGAGTTACATGAAAATTGGCTAAATACTCTAATTAGAAGATAGTTATTGTTAGAC--TATTTTAAAGAC--AACAAAATCTAATTAAATACTGCTTGTAAGATACACTTCATAAATTTAAGGACAAAAAGAAG-----------TTgaagataaaagaatg-a---aaaaaaaaagatataccttGTAAATGCCAACCAAAATAAGCTGGCATAATTC---TAACATCAGAGAAAATAGACTTTTCAAGAAtcatcatga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82518217 327 + 85787240 gaaagaagaggaaagacaatataaaataggtggactaatagaaaacaactgtaagatggtagctataaattcaaatatatctgtaattgagttacatgaaaattggctaaatactctaattagaagatagttattgttagactgtattttaaagac--aacaaaatctaattaaatactgcttgtaagatacacttcataaatttaaggacaaaaagaag-----------ttgaagataaaagaatg-a---aaaaaaaaagatataccttgtaaatgccaacaaaaataagctggcatagttc---taatatcagagaaaacagactttTTGAgaatcatcatga i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36352262 333 + 80974532 gaaaggcaagaaaaggaaacatagaacatgtggaccaatagaaaacaattctaacatgatagccctaaacccgtgtatatcaaaaattgcattaaatgacaattgagtaaatactccaattaaaagataattattgtcatactgtatttaaaaaacctaaagacgtctaact--gtactgcttatgaggcacactccttaaatataaggacacacagagaaatgctatattttacaaataaaagaatg-g-------aaaaagatatgccttgcaaat----aacaaaatgagctggtgtagttctattagtatcagagaaagtagactttaaaggaagaatcatca i canFam3.chr7 I 263 I 93 e mm10.chr1 178780654 4726 + 195471971 I e calJac3.chr19 14196964 3568 - 49578535 I a score=487903.000000 s hg38.chr1_KI270759v1_alt 191243 205 + 425601 agtcaggagttcaagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagctgggtgtggtggcgcatgtctgtaatcgcaactactc-gggaggttgaggcaggagaattgcttgaaccctgggggtggaggttgctgagagccgagattgcaccattgcactccagcctgggcaacaagggtgaaa s panTro4.chr1 224944366 205 + 228333871 agtcaggagttcaagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagctgggtgtggtggcgcatgtctgtaatcgcaactactc-gggaggttgaggcaggagaattgcttgaaccctgggggcggaggttgctgagagccgagattgcaccattacactccagcctgggcaacaagggtgaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226302391 205 - 229942017 agtcaggagttcaagaccagcctgaccaacataaagaaaccccatctctactaaaaatacaaaattagttgggtgtggtggcgcatgtctgtaatcgccgctactg-gggaggttgaggcaggataattgcttgaaccctgggggcggaggttgctgagagccgagattgcaccattgcactccagcctgggcaatgagggtgaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140192331 206 - 143122389 agtcaggagttcaagaccagcctgaccaacatagagaaaccccatctctactaaaaatacaaaattagctgggtgtggtggcgcatgtctgtaattgcagctactctgggaggttgaggcaggagaattgcttgaaccctgggggcagaggttgctgagagccgagattgcagcattgcactccagcctgggcaacaagggtgaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16906562 205 - 229590362 ggtggggagttcaagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaagttagctgggtgtggaggcgcatgtctgtaatcccagctactc-gggaggctgaggcaggagaatcgcttgaaccctggggacggaggttgtggtgagccaagactgcaccattgcactccagcctgggcaacaagggtgaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223669865 205 - 227556264 ggtggggagttcaagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaagttagctgggtgtggaggcgcatgtctgtaatcccagctactc-gggaggctgaggcaggagaatcgcttgaaccctggggacggaggttgtggtgagccaagactgcaccattgcactccagcctgggcaacaagggtgaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16720215 205 - 220367699 ggtgaggagttcaagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaagttagctgggtgtggaggcgcatgtctataatcccagctactc-aggaggctgaggcaggagaatcgcttgaaccctggggacggaggttgtggtgagccaagactgcaccattgcactccagcctgggcaacaagggtgaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82518544 205 + 85787240 ggtggggagttcaagaccagcctgaccaacatggagaaaccccatctctactaaaaatacaaagttagctgggtgtggtggcacatgtctgatatcccagctactc-gggaggctgacgcaggagaatcgcttgaaccctggggacggaggttgtggtgagccaagactgcaccattgcactccagcctgggcaacaagggtgaaa i chlSab2.chr25 C 0 C 0 e mm10.chr1 178780654 4726 + 195471971 I e canFam3.chr7 36352595 93 + 80974532 I e calJac3.chr19 14196964 3568 - 49578535 I a score=306566.000000 s hg38.chr1_KI270759v1_alt 191448 199 + 425601 ctccatctcaaaaaaaaaaaaaaaGATAAGTATCTTTAATTTATCATTAATGTTAAATAGCcaaaaatatacagaattaaaag----aagaaaccagtctgtaatcatagaaa-------caacatgt-ctctctcaaaaactgatagaacaggcagacaa----------aaaatcagttagg--agagaagatctgaatctctcaacaa------tgacacaattca s panTro4.chr1 224944571 194 + 228333871 ctccatctcaaaaaaaaaa-----gataagtatctttaatttctcattaatgttaaatagccaaaaatatacagaattaaaag----aagaaaccagtctgtaatcatagaaa-------caacatgt-ctctctcaaaaactgatagaacaggcagacaa----------aaaatcagtaagg--agagaagatctgaatctctcaacaa------tgacacaattca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226302596 196 - 229942017 ctccttctcaaaaaaaaaa---aagataagtatctttaatttatcattaatgttaaatagccaaaaatatacagaattaaaag----aagaaaccaatctgtaatcatagaaa-------caacatgt-ctctctcaaaaactgatagaacaggcagacaa----------aaaatcagtaagg--agagaagatctgaatctctcaacaa------tgacacaattca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140192537 193 - 143122389 ctccatctcaaaaaaaatg------ataaatatctttaatttatcattaatgttaaatagccaaaaacatacagaattaaaag----aagaaaccagtctgtaatcatagaaa-------caacatgt-ctctctcaaaaactgatagaacagtcagacaa----------aaaatcagtaagg--agagaagatctgaatctctcaacaa------tgacacaattca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16906767 146 - 229590362 ctccatctcaaaaataata-aataaaTAAGTATCTTTAATTTATCACTAATGATAAATACCCAAAAATGTGCAGAATTGAAAG----AAGAAACCAGTCTGTAATCATAGA----------------------------------------------------------------------AGG--AGAGAAGATCTGAATGTctcaacaa------tgacacaattca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223670070 146 - 227556264 ctccatctcaaaaataata-aataaaTAAGTATCTTTAATTTATCACTAATGATAAATACCCAAAAATGTGCAGAATTGAAAG----AAGAAACCAGTCTGTAATCATAGA----------------------------------------------------------------------AGG--AGAGAAGATCTGAATGTctcaacaa------tgacacaattca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16720420 146 - 220367699 ctccatctcaaaaataata-aataaataagtatctTTAATTTATCACTAATGATAAATACCCAAAAATGTGCAGAATTAAAAG----AAGAAACCAGTCTGTAATCATAGA----------------------------------------------------------------------AGG--GGAGAAGATCTGAATGTCTCAACAA------TGACACAATTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82518749 146 + 85787240 ctctatctcaaaaataata-aataaaTAAGTATCTTTAATTTATCACTAATGATAAATACCCAAAAATGTGCAGAATTAAAAG----AAGAAACCAGTCTGTAATCATAGA----------------------------------------------------------------------AGG--AAAGAAGATCTGAATGTctcaacaa------tgacacaattca i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36352688 182 + 80974532 ctccaaatggaaaaaggaa---------------------------------------------aagttgatagaattaaaaggataaataaaccaattcatagtcatagtgaggtgctttaatatctcctatctcaagaattgatagatcaggctgacaaaaaaataaataaaaccaataaggatatagaagatctgaaca--ttatcaattcattttacccaactgg i canFam3.chr7 I 93 C 0 e mm10.chr1 178780654 4726 + 195471971 I e calJac3.chr19 14196964 3568 - 49578535 I a score=1155919.000000 s hg38.chr1_KI270759v1_alt 191647 419 + 425601 tttccaagtaca-actgg----------gacat-----------------taacc-aaaattgaccatatgttggctc---ataaagcaattcttgacaaatttcaaaggactaaattcattc-agagta--ctttttttttgaccagagagaaattaagctgtaaatcaatgaccataaaaatagaaaatca----------------ccaaatgtttagaaattaagcattctacttgtaaataaccaacaggttaaagaagaaatttcagtggatttcagacaatagtttgaaatgaa---atgatgaaaatTTTACACG-tcaagcgctaactaaccactcacccctgaagtgtgtattcct----aaggtacttcaaatattaaataactactcctataatgtaaattaataactaacccaca--cat-tattatactatgtatactgaagGACTG----TT-------Atttatttatttatttta s panTro4.chr1 224944765 423 + 228333871 tttccaagtaca-actgg----------gacat-----------------tagcc-aaaattgaccatatgttgtctc---ataaagcaattcttgacaaatttcaaaggactaaattcattc-agagta--ttttttttttgaccagagagaaattaagctgtaaatcaatgaccataaaaatagaaaatcagaaa--------atcaccaaatgtttagaaattaagcattctacttgtaaataaccaacaggttaaagaagaaatttcagtggatttcagacaatagtttgaaatgaa---atgatgaaaatTTTACACG-tcaagcgctaac----cactcacccctgaagtgtctattcct----aaggtacttcaaatattaaataactactcctataatgtaaattaataactaacccaca--cat-tattatactatgtatactgaagGACTG----TT-------Atttatttatttattttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226302792 425 - 229942017 tttccaagtaca-actgg----------gacat-----------------taacc-aaaactgaccatatgttggctc---ctaaagcaattcttgacaaatttcaaaggactaaattcattc-agagtattttttttttttgaccagagagaaattaagctataaatcaatgaccataaaaatagaaaatcagaaa--------atcaccaaatgtttagaaattaagcattctacttataaataaccaacaggttaaagaagaaatttcagtggatttcagacaatagtttgaaatgaa---atcatgaaaattttacata-tcaagcactaac----caatcacccctgaagtgtgtattcct----aaggtacttcaaatattaaataactattcctataatgtaaattaataactaatccaca--cat-tattatactatgtatactgaagGACTG----TT-------Atttatttatttattttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140192730 422 - 143122389 tttccaagtaca-actgg----------gacat-----------------taacc-aaaattgaccatatgttggctc---ataaagcaattcttgacaaatttcaaaggactaaattcattc-ggagta---tttttttttgaccagagagaaattaagctataaatcaatgaccataaaaatagaaaatcagaaa--------atcaccaaatgtttagaaattaagcattctacttataaataaccaacaggttaaagaagaaatttcagtggatttcagacaatagtttgaaatgaa---atgatgaaaatTTTACACA-tcaagcgctaac----caatcacccctgaagtgtgtattcct----aaggtacttcaaatattaaataactactcctataatgtaaattaataactaacccaca--cat-tattatactatgtatactgaagGCCTG----TT-------Atttatttatttattttg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16906913 445 - 229590362 tttccaagtaca-actgg----------gacat-----------------taacc-aaaattgaccatatgttggctc---ataaagcaattcttaacaaaattcaaaggactaaaatcattc-agagta---tttttttttgaccagagagaaattaagctataaatcaatgaccataaaaatagaaaattagaaaatcagaaaatcaccaaatgtttagaaattaagcagtctacttataaataaccaataggttaaagaagaaatttcagtggatttcagacagtagttggaaattaaatgatgatgaaaattttacaca-tcaaGCGCCAActaaccaatcacccctgaagtatgtattcctgaaaaaggcactccgaatattaaataacttctcctataatgtaaattaataactaatccaca--cat-tagtgtactatgtatactgaagcactgtaattt-------atttatttgtttatttag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223670216 446 - 227556264 tttccaagtaca-actgg----------gacat-----------------taacc-aaaattgaccatatgttggctc---ataaagcaattcttaacaaaattcaaaggactaaaatcattc-agagta--ttttttttttgaccagagagaaattaagctataaatcaatgaccataaaaatagaaaattagaaaatcagaaaatcaccaaatgtttagaaattaagcaatctacttataaataaccaataggttaaagaagaaatttcagtggatttcagacagtagttggaaattaaatgatgatgaaaattttacaca-tcaaGCGCCAActaaccaatcacccctgaagtatgtattcctgaaaaaggcactccgaatattaaataactactcctataatgtaaattaataactaatccaca--cat-tagtgtactatgtatactgaagcactgtaattt-------atttatttgtttatttag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16720566 446 - 220367699 TTTCCAAGTACA-ACTGG----------GACAT-----------------TAACCAAAAATTGACCATATGTTGGCTC---ATAAAGCAATTCTTGACAAAATTCAAAGGACTAAAATCATtc-agagta---tttttttttgaCCAGAGAGAAATTAAGCTATAAATCAATgaccataaaaatagaaaattagaaaatcagaaTATCACCAAATGTTTAGAAATTAAGCAATCTACTTATAAATAACCAATAGGTTAAAGAAGAAATTTCAGTGGATTTCAGACAGTAGTTGGAAATTAAATGATGATGAAAATTTTATACA-TCAAGCGCCAACTAACCAATCACCCCTGAAGTATGTATTCCTGAAAAAGGCACTCCGAATATTAAATAACTACTCCTATAATGTAAATTAATAACTAATCCACA--CAT-TAGTATACTATGTATACTGAAgcactgtaattt-------atttatttgtttatttag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82518895 446 + 85787240 tttccaagtaca-actgg----------gacat-----------------taacc-aaaattgaccatatgttgactc---ataaagcaattcttgacaaaattcaaaggactaaaatcattg-agagta--ttttttttttgaccacagagaaattaagctataaatcagtgaccataaaaatagaaaattagaaaatcagaaaatcaccaaatgtttagaaattaagcaatctacttacaaataaccaataggttaaagaagaaatttcagtggatttcagacagtagttggaaattaaatgatgatgaaaattttacaca-tcaaGCGCCAActaaccaatcacccctgaagtgtgtattcctgaaaaaggcactccaaatattaaataactactcctataatgtaaattaataactaatccaca--cat-tagtatactatgtatactgaagcactgtaattt-------atttatttgtttatttag i chlSab2.chr25 C 0 C 0 s mm10.chr1 178785380 356 + 195471971 tttccaagtatatgttgg----------gacat-----------------tgact-gacattgaccacatgttggctc---attaaacaagtgtcaacaaatgccagagggctaactgcattctagagta----tcctttctgaccacaaagaaatt----TGTACATCAGT-----------------------------------------------------------CTCTCCT---------------GGTCTAACAAAACATCCCAATGGATCTCTGAGAATATTTTGAAGGTAGGTGATCCTGACGCCTGAACACA-TTCAGGGCTAACTGGCCGATC-CCCCTG--GTGTGTACTCTTGATCAAGGCACCTGGGATGT----TGCCTACTCCTCTGATGTGAATTAATACCTCGCCTATGGCCA-----TACGCTATGCATGCCTCAGGAACA---TGT-------TTTTGACCGCTGACTGTG i mm10.chr1 I 4726 C 0 s canFam3.chr7 36352870 451 + 80974532 tgtgcctggatc-actggactaaatgatgacatgtacaatttgttccgagttacc-atagcttaccatgtgccagctctttataaagtaagtctcaacaagtttcaaaggcttgaatccactc---agta---tggattttcgaccaaagagaaattaagctagaaatcaatgaccaagaaaaaagaaaactc----------------ccaaatgtttggaaattaagcag-----ttataaataacccatgggctaaagaagaagtctcagtggaaattagacaatattttgaaattaaacgataatgaaaattcaacatgtTTAAGCactaat--------catccctgaaatatgtatttctgattaaggcattttaaatgctaagtaacttcccgtatggtgtaaatcagta-ctaacccata--tatgtatcaca-tatgtatgctgaaAGGCTGTAtttttttaaagatttatttatttatttga i canFam3.chr7 C 0 I 254 e calJac3.chr19 14196964 3568 - 49578535 I a score=209105.000000 s hg38.chr1_KI270759v1_alt 192066 91 + 425601 agacagaatcttgccctgttgcccag--gctggag-----tgcaatggcgtgatctcagctcactgcaacctccgcctcctgggttcaa--gtgattctc s panTro4.chr1 224945188 90 + 228333871 agacagaatctcgccctgttgcccag--gctggag-----tgcaatggcacgatctcagcttactgcaacctccgcctcccgggttcaa--gtgattc-c i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226303217 93 - 229942017 agacagaatctcgccctgttgcccaggtgctggag-----tgcaatggcgcgatctcagctcactgcaacctccacctcccgggttcaa--gtgattctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140193152 91 - 143122389 agacagaatctcgccctgttgcccag--gctggag-----tgcaatggtgcgatctcagctcactacaacctccacctcctgggttcaa--gtgattctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16907358 91 - 229590362 agacagagtcttgccctgttgcccag--gctggag-----tgcaatggcatgatctcggctcactgcaacctccgcctcccgggttcaa--gcaattctc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223670662 91 - 227556264 agacagagtcttgccctgttgcccag--gctggag-----tgcaatggcatgatctcggctcactgcaacctccgcctcccgggttcaa--gcaattctc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16721012 91 - 220367699 agacagagtcttgccctgttgcccag--gctggag-----tgcaatggcatgatctcggctcactgcaacctctgcctcccgggttcaa--gcaattctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82519341 91 + 85787240 agacagagtcttgccctgttgcccag--gctggag-----tgcaatggcatgatctcggctcactgcaacctccgcctcccaggttcaa--gcaattctc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178785736 51 + 195471971 GGACA-------------------AG--AATGGAGGTAATTACAATAATGTGTT----------------------------GATTCAGGTGTGATTTTC i mm10.chr1 C 0 I 45 e canFam3.chr7 36353321 254 + 80974532 I e calJac3.chr19 14196964 3568 - 49578535 I a score=379649.000000 s hg38.chr1_KI270759v1_alt 192157 159 + 425601 ctgcctcagcctcctgagtagctgggattacaggcatgtgccaccacacccagctaatttttatatctttagtagagacagggtttcaccttgttggccaggctggtctcaaactcctgacctcgtgatctgcctgccttggcctcccaaagtgctgag s panTro4.chr1 224945278 159 + 228333871 ctgcctcagcctcctgagtagctgggattacaggcacgcgccaccacacccagctaatttttgtatctttagtagagatggggtttcactttgttggccaggctgatctcgaactcctgacctcgtgatctgcctgccttggcctcccaaagtgctgag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226303310 159 - 229942017 ctgcctcagcctcctgagtaactgggattacaggcacgcaccaccacacccagctaatttttatatctttagtagagacggggtttcaccttgttggccaggttggtcttgaactcctaacctcgtgatctgcctgccttggcctcccaaagtgctgag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140193243 159 - 143122389 ctgcctcagcctcctgagtagctgggattacaggcacgcgccaccacacccggctaatttttatatctttagtagagacggggtttcaccttgttggccaggctggtctcgaactcctgacctcgtgatctgtctgccttggcctcccaaagtgctgag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16907449 159 - 229590362 ctgcctcagcctccagagtagctgggattacaggtgtgcaccaccacacccggctaatttttgtatctttagtagagacggggtttcaccatgttggccaggctagtctcgaactcctgacctggtgatctgcccaccttggcctcccaaagtgctgag i rheMac3.chr1 C 0 I 161 s macFas5.chr1 223670753 159 - 227556264 ctgcctcagcctccagagtagctgggattacaggtgtgcaccaccacacccggctaatttttgtatctttagtagagacggggtttcaccatgttggccaggctagtctcgaactcctgacctggtgatctgcccaccttggcctcccaaagtgctgag i macFas5.chr1 C 0 I 161 s papAnu2.chr1 16721103 159 - 220367699 ctgccacagcctccagagtagctgggattacaggtgtgcaccaccacacccggctaatttttgtatctttagtagagacggggtttcaccatgttggccaggctagtctcgaactcctgacctggtgatctgcccaccttggcctcccaaagtgctgag i papAnu2.chr1 C 0 I 161 s chlSab2.chr25 82519432 158 + 85787240 ctgccttagcctccagagtagctgggattacaggcgc-cgccaccgtgcccggctaatttttgtatctttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctggtgatctgcccaccttggcctcccaaagtgctgag i chlSab2.chr25 C 0 I 161 e mm10.chr1 178785787 45 + 195471971 I e canFam3.chr7 36353321 254 + 80974532 I e calJac3.chr19 14196964 3568 - 49578535 I a score=566059.000000 s hg38.chr1_KI270759v1_alt 192316 167 + 425601 attTATTCTATCATATTA---TCATTCATCTCA----------------AA-----CTCCATATGTAACTTGCAGTTGATTTTTCAA-CATTCAAACATCATTTATTATTATCCATCAAATTGCCATCTTGTTCCATTTCCCTGCATATCTCCTTTCTGTGTAGAAGTCTTCCTTCTGGGAGCAGGACGAGG s panTro4.chr1 224945437 167 + 228333871 attTATTCTATCGTATTA---TCATTCATCTCA----------------AA-----CTGCATAAGTAACTTGCAGTTGATTTTTCAA-CATTCAAACATCATTTATTATTATCCATCAAATTGCCATCTTGTTCCATTTCCCTGCATATCTCCTTTCTGTGTAGAAGTCTTCCTTCTGGGAGCAGGACGAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226303469 167 - 229942017 attTATTCTATCATATTA---TCATTCATCTCA----------------AA-----CTGCATATGTAACTTGCAGTTGATTTTTCAA-CATTCAAACATTATTTATTATTATCCATCAAATTGCCATCTTGTTCCATTTCCCTGCATATCTCCTTTCTGTGTAGAAGTCTTCCTTCTGGGAGCAGGGCGAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140193402 167 - 143122389 attTATTCTATCGTATTA---TCATTCATCTCA----------------AA-----CTGCATATGTAACTTGCAGTTGATTTTTCAA-CATTCAAACATCATTTATTATTATCCCTCAAATTTCCATCTTGTTCCATTTCCCTGCATATCTCCTTTCTGTGTAGAAGTCTTCCTTCTGGGCGCAGGGCAAGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16907769 168 - 229590362 ATTTATTCTATCATATTG---TCATTCATCTCA----------------AA-----CTGTATATGTGACTTGCAGTTGATTTTTCAACCATTCAAACATCATTTATGATTATCCATCAAATGGCCATCTTGTTCCGTTTCCCTGCATATCTCCTTTCTGTGTAGAAGTCTTCCTTCTGGGAGCGGAGGGAGG i rheMac3.chr1 I 161 C 0 s macFas5.chr1 223671073 168 - 227556264 ATTTATTCTATCATATTG---TCATTCATCTCA----------------AA-----CTGTATATGTGACTTGCAGTTGATTTTTCAACCATTCAAACATCATTTATGATTATCCATCAAATGGCCATCTTGTTCCATTTCCCTGCATATCTCCTTTCTGTGTAGAAGTCTTCCTTCTGGGAGCGGAGGGAGG i macFas5.chr1 I 161 C 0 s papAnu2.chr1 16721423 168 - 220367699 atttattctATCATATTA---TCAATCATCTCA----------------AA-----CTGTATATGTGACTTGCAgttgatttttcaaatattcaaacaTCATTTATGATTATCCATCAAATGGCCATCTTGTTCCATTTCCCTGCATATCTCCTTTCTGTGTAGAAGTCTTCCTTCTGGGAGCGGAGGGAGG i papAnu2.chr1 I 161 C 0 s chlSab2.chr25 82519751 168 + 85787240 ATTTATTCTATCATATTA---TCATTCATCTCA----------------AA-----CTGTATATGTGACTTGCAGTTGATTTTTCAACCATTCAAACATCATTTATGATTATCCATCAAATGGCCATCTTGTTCCGTTTCCCTGCATATCTCCTTTCTGTGTAGAAGTCTTCCTTCTGGGAGCGGAGGGAGG i chlSab2.chr25 I 161 C 0 s calJac3.chr19 14200532 172 - 49578535 ATTTATTCTCTCATATTA---TCATTCATCTCA-----AAAAATAATGCAA-----CTGCATATGTAACTTGCAGCTGATTTTG-AA-CATGCAAACATCATTTA-----ATCCATCAAATTGTCACCTTGTTCCGTTTCCCTGCGTATCTCTTTTCTGTGCAGATGTCTCCCTTCTGGGAGCACAGGGAGG i calJac3.chr19 I 3568 C 0 s mm10.chr1 178785832 168 + 195471971 AGTCATTTTCTCATATTA---TC-CCCATCTCCAAAAAAAAAAAAATGTGA-----TGGTGTATGTAATTTACA---GAGATTTCAA-CATTCCCAAATCATC----GTTACTTGTAAA----CCATATCTTTTCATTTCCAAGTAGATCTCTTTCCTTTATGGAGGTCTTC---CTGGGCACAGAGGGAGG i mm10.chr1 I 45 I 1023 s canFam3.chr7 36353575 166 + 80974532 ACTTATCACATCATACTACATTCATCCATCTAA----------------AAAACTGATGCCTCTTTAATTGCCAGATGACTTCTCAA-CATTCATACATCATTT---GTCATCCATCAGATTGCCATTTC---CCATTTCCCTGGGGATCGCTTTCCCATGTGGCAGCCTTC---CTGGGAGCAGAGGGAGG i canFam3.chr7 I 254 C 0 a score=100440.000000 s hg38.chr1_KI270759v1_alt 192483 32 + 425601 TAAGTGAGATGAGAGCCTGGGCTGTCACACTT s panTro4.chr1 224945604 32 + 228333871 TAAGTGAGATGAGAGCCTGGACTGCCACACTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226303636 32 - 229942017 TAAGTGGGATGAAAGCCTGGTCTGCCATACTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140193569 32 - 143122389 TAAGTGGGATGAGAGCCTGGTCTGCCATACTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16907937 32 - 229590362 TAGGTGGGATGAGAGCCTGGTCTGCCACACTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223671241 32 - 227556264 TAGGTGGGATGAGAGCCTGGTCTGCCACACTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16721591 32 - 220367699 TAGGTGGGATGAGAGCCTGGTCTGCCACACTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82519919 32 + 85787240 TAGGTGGGATGAGAGCCTGGTCTGCCACACTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14200704 30 - 49578535 TAGGTGGGATGAGAGCCTGCTCTGGCACAC-- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36353741 31 + 80974532 -CAGAGGCATGAGACCCTGGCCATCCACATTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178786000 1023 + 195471971 I a score=2730551.000000 s hg38.chr1_KI270759v1_alt 192515 883 + 425601 TATATTCTAATATTTTTAACCCAATTTGCTTTAGTGTGGTCAGAGAAGCTGGAAATTGAATCAGAGACCTCAGGGGCAACTCAG----GTGATAAGTCAGCCTGGATGTGAAGTTTATCAGTCTTGGCTCCGTGTGTTTAATTAGAAGCTAGTGGAATGTTATCATTGACTCCGCCAGCAAACATCTTCACTGGAGAGGCAGCTGGGTTAAGGAAGAACATGCTGAAAATAGAGCTTATGAA-CATAGCTGAAAACTGTTTATCCACAGCA----ACCAGCAGAAGTGAGGGGCGGGAGAGAG-CCCAGCAGTTGGCAATCAGAGCGTGCATATAAGCAAAGGGATCATTTCTTCCAAGCTGTGTCAGAGGGCACTCAATCATGTATACTGAGCTTTCTTCCTGAAAAGATAGTTCAAATCTGTGTGGATTGTCAAGTTTTCTTCCTCTCCATAATATGGTCATTAATATTTCACTT-CTTTTAGCCAGGAACTTTC-AATAATTCAACATCTGCTCTTCCAGGCTGCCTGCAAGAAAGGCCAGTTTCCACCCACTGCCCTCCTGGGTTTGTCCTTCCAGGTACAGAATCTGAGAGGTACTGGGGAAAAGAGGAGGCAACGAGGCTAGT---CTCTCACTCCTCTCTCTTCCCTACCTGTGTTTCTTGGACGGGTTCACA---TTCTTCTTGCATCAGATAGTAAATGCAGTCAAGGAACTGGTGA--GGAAAATGGGAAGTT-----------------------------TTTTTGTGCATGTGTTAGATGGGAAGAGGAAAATTGGCAAGTGTTCTTTAAGAAAAGCAGACACAGTTACATTCATGAGGCAACCGGTTGCCAGACTAGTGTGACTCCTGAAGGAACAACTTGGATTGCC-----TTTTTTTTTAAAATCAGTTTTTATCTAGAC s panTro4.chr1 224945636 881 + 228333871 TATATTCTAGTATTTTTAACCCAATTTGCTTTAGTGTGGTCAGAGAAGCTGGAAATTGAATCGGAGACCTCAGGGGCAACTCAG----GTGATAAGTCAGCCTGGATGTGAAGGTTATCAGTCTTGGCTCCGTGTGTTTGATTAGAAGCTAGTGGAATGTTATCATTGACTCCGCCAGCAAACATCTTCACTGGAGAGGCAGCTGGGTTAAGGAAGAACATGCTGAAAATAGAGCTTATGAA-CATAGCTGAAAACTGTTTATCCACAGCA----ACCAGCAGAAGCGAGGGGTGGGAGAGAG-CACAGCAGTTGGCAATCAGAGCGTGCATATAAGCAAAGGGATCATTTCTTCCAAGCTGTGTCTGAGGGCACGCAATCATGTATACTGAGCTTTCTTCCTGAAAAGATAGTT-AAATCTGTGTGGATTGTCAAGTTTTCTTCCTCTCCATAATATGGTCATTAATATTTCACTTTCTTTTAGCCAGGAACTTTC-AATAATTCAACATCTGCTCTTCCAGGCTGCCTGCAAGAAAGGCCAGTTTCCACCCACTGCC-TCCTGGGTTTGTCCTTCCAGGTACAGAATCTGAGAGGTACTGGGGAAAAGAGGAGGTAACGAGGCTAGT---CTCTCACTCCTCTCTCTTCCCTACCTGTGTTTCTTTGACGGGTTCACA---TTCTTCTTGCATCAGATAGTAAATGCAGTCAAGGAACTGGTGA--GGAAAATGGGAAGTT-----------------------------TTTTTGTGCGTGTGTTAGATGGGAAGAGGAAAATCAGCAAGTGTTCTTTAAGAAAAGCAGACACAGTTACATTCATGAGGCAGCCGGTTGCCAGACTAGTATGACTCCTGAAGGAACAACTTGGATTGCC-----TTTTTTTTTAAA-TCAGTTTTTATCTAGAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226303668 885 - 229942017 TATATTCTAATATTTTTAACCCAATTCGCTTTAGTGTGGTCAGAGAAGCTGGAAATTGAATCAGAGACCTCAGGGGCAACTCAG----ATGATAAGTCAGCCTGGATGTGAAGGTTATCAGTCTTGGCTCTGTGTGTTTAATTAGAAGCTAGTGGAATGTTATCATTGACTCCGCCAGCAAACATCTTCACTGGAGAGGCAGCTGGGTTAAGGAAGAACATGCTGAAAATAGAGCTTATGAA-CGTAGCTGAAAACTGTTTATCCACAGCA----ACCAGCAGAAGTGAGGGGCAGGAGAGAG-CACAGCAGTTGGCAATCAGAGCGTGCATATAAGCAAAGGGATCATTTCTTCCAAGCTGTGTCTGAGGGCACTCAATCATGTTTACTGAGCTTTCTTCCTGAAAAGATAGTTTAAATCTGTGTGGATTGTCAAATTTTCTTCCTCTCCATAATATGGTCATTAATATTTCACTTTCTTTTAGCCAGGAGCTTTC-AATAATTCAACAGCTGCTCTTCCAGGCTGCCTGCAAGAAAGGCCAGTTTCCACCCACTGCC-TCCTGGTTTTGTCCTTCCAGGTACAGAATCTGAGAGGTACTGGGGAAGACAGGAGGCAACGAGGCTAGT---CTCTCACTCCTCTCTCTTCCCTACCTGTGTTTCTTTGACGGGTTCACATTCTTCTTCTTGCATCAGATAGTAAATGCAGTCGAGGAACTGGTGA--GGAAAATGGGAAGTT-----------------------------TTTGTGTGTGTGTGTTAGATGGGAAGAGGAAAATTAGCAAGTGTTCTTTAAGAAAAGCAGACAGAGTTACATTCATGAGGCAGCCGGTTGCCGGGCTAGTATGACTCCTGAAGGAACAACTTGGATTGCC-----TTTTTTTTTTAA-TCAGTTTTTATCTAGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140193601 914 - 143122389 TATATTCTAATATTTTTAGCCCAGTTTGCTTTAGTGTGGTCAGAGAAGCTGGAAATTGAATCAGAGACCTCAGGGGCAACTCAG----ATGATAAGTCAGCCTGGATGTGAAGGTTATCAGTCTTGGCTCCGTGTGTTTCATTAGAAGCTAGTGGAATGTTATCATTGACTCCACCAGCAAAAATCTTCACTTGAGAGGCAGCTGGGTTAAGGAAGAACATGCTGAAAATAGAGCTTATGAA-CATAGCTGAAAAC--TTTATCCACAGCA----AGCAGCAGAAGCAAGGGGCGGGAGAGAG-CACAGCAGTTGGCAATCAGAGTGTGCATATAAGCAAAGGGATCATTTCTTCCAAGCTGTGTCTGAGGGCACTCAATCATGTATAGTGAGCTTTCTTCCTGAAAAGATAGTTTAAATCTGTGTGGATTGTCAGGTTTTCTTCCTCTCCATAATATGGTCATTAATATTTCACTTTCTTTTAGCCAGGAACTTTC-AATAATTCAACAGCTGCTCTTCCAGGCTGCCTGCAAGAAAGGCCAGTTTCCACCCACTGCC-TCCTGGTTTTGTCCTTCCAGGTACAGAATCTGAGAGGTACTGGGGAGAAGAGGAGGCAAGGAGGCTAGT---CTCTCACTCCTGTCTCTTCCCTACCTGTGTTTCTTTGACGGGTTCACA---TTCTTCTTGCATCATATAGTAAACACAGTCGAGGAACTGGTGA--GAAAAATGGGAAGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTAAAAGGGAAGAGGAAAATTAGCTCATGTTCTATAAAAAAAGCAGACACATTTACATTCATGAGGCAGCTGGTTGCCAGACTAGTATAACTCCTTAAGGAACAACTTGGATTCCCTTTTTTTTTTTTTTTTA-TCAGTTTTTATCTAGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16907969 886 - 229590362 TATATTCCAGTATTTTTAACCCAGTTTGCTTTAGTGTGGTCAGAGAAGCTGGAAATCGAATCAGAGACCTCAGGGGCAACTCA-------GATAAGTCAGCCTGGATGCGAAGGTTACCAGTCTCGGCTCCGTGTGTTTTATTAGAAGCTAGTGGAATGTTATCCTTGACTCTGCCAGCAAAAATCTTCACCTGAGAGGCAACTGGGTTAAGGAAGAACATGCTGAAAATAGAAATTATGAACCGTAGCCGAAAACTGTTTATCCACAGCAAC-CACCAGAAGAAGTGAGGGGTGGGAGAGAG-CGCAGCAGTTGGCAATCAGAGCGTGCACATAAGCAAACGGATCATTTCTTCCAAGCTGTGTCTGAGGGCACTCAGTCATGTATACTGAGCTTTCTTCCTGAAAAGATAGTCTAAATCTATGTGGATTGTGAAGTTGTCTTCCTTTCCATAATATGGTCATTAACATTTCACTTTCTTTTAGCCAGGAACTTTC-AATAATTTAACAGCTGCTCTTCCAGGCTGCC-GTGAGAAAGGCCAGTCTCCACCCACTGCC-TCCTGGTTTTGTCCTTCCAGGTACAGAATCTGAGAGGAACTGGGGAGAAGGGGAGGCAATGAGGCTAGTCTCCTCTCACTCCTCTTTCTTCCCTGCCTGTGTTTCTTTGATGGGTTCACATTCTTCTTCTTGCATCAGATGGCAAATGCAGTCGAGGAACCGGTGA--GGAAAATGGGAAGGG--------------------------GTGTGTGTGTGTGTGTGTTAGAAGGGAAGAGGAAAATTAACAAGTGTTCTTTAAGAAAAGCAGACATAGTTACATTCATGAGGCAGCCGGTTGCCAGACTAGTATGAGTCCTGAAGGAACAACTTGGATTGCA-----TTTTTT-----A-TTGGTTTTTATCTAGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223671273 888 - 227556264 TATATTCCAGTATTTTTAACCCAGTTTGCTTTAGTGTGGTCAGAGAAGCTGGAAATCGAATCAGAGACCTCAGGGGCAACTCA-------GATAAGTCAGCCTGGATGCGAAGGTTACCAGTCTCGGCTCCGTGTGTTTTATTAGAAGCTAGTGGAATGTTATCCTTGACTCTGCCAGCAAAAATCTTCACCTGAGAGGCAACTGGGTTAAGGAAGAACATGCTGAAAATAGAAATTATGAACCATAGCCGAAAACTGTTTATCCACAGCAAC-CACCAGAAGAAGTGAGGGGTGGGAGAGAG-CGCAGCAGTTGGCAATCAGAGCGTGCATATAAGCAAACGGATCATTTCTTCCAAGCTGTGTCTGAGGGCACTCAGTCATGTATACTGAGCTTTCTTCCTGAAAAGATAGTCTAAATCTATGTGGATTGTGAAGTTGTCTTCCTTTCCATAATATGGTCATTAACATTTCACTTTCTTTTAGCCAGGAACTTTC-AATAATTTAACAGCTGCTCTTCCAGGCTGCC-GTGAGAAAGGCCAGTCTCCACCCACTGCC-TCCTGGTTTTGTCCTTCCAGGTACAGAATCTGAGAGGAACTGGGGAGAAGGGGAGGCAATGAGGCTAGTCTCCTCTCACTCCTCTTTCTTCCCTGCCTGTGTTTCTTTGATGGGTTCACATTCTTCTTCTTGCATCAGATGGCAAATGCAGTCGAGGAACGGGTGA--GGAAAATGGGAAGGG------------------------gtgtgtgtgtgtgtgtgtgtTAGAAGGGAAGAGGAAAATTAACAAGTGTTCTTTAAGAAAAGCAGACACAGTTACATTCATGAGGCAGCCGGTTGCCAGACTAGTATGAGTCCTGAAGGAACAACTTGGATTGCA-----TTTTTT-----A-TCGGTTTTTATCTAGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16721623 882 - 220367699 TATATTCCAGTATTTTTAACCCAGTTTGCTTTAGTGTGGTCAGAGAAGCTGGAAATCGAATCAGAGACCTCAGGGGCAACTCA-------GATAAGTCAGCCTGGATGCAAAGGTTACCAGTCTCGGCTCCGTGTGTTTTATTAGAAGCTAGTGGAATGTTATCCTTGACTCTGCCAGCAAAAATCTTCACCTGAGAGGCAACTGGGTTAAGGAAGAACATGCTGAAAATAGAAATGATGAACCGTAGCCGAAAACTGTTTATCCACAGCAAC-CACCAGAAGAAGTGAGGGGTGGGAGAGAG-CGCAGCAGTTGGCAATCAGAGCGTGCATATAAGCAAACGGATCATTTCTTCCAAGCTGTGTCTGAGGGCACTCAGTCATGTATACTGAGCTTTCTTCCTGAAAAGATAGTTTAAATCTATATGGATGGTgaagttttcttcctttccataatATGGTCATTaacatttcactttcttttagCCAGAAACTTTC-AATAATTTAACAGCTGCTCTTCCAGGCTGCC-GTGAGAAAGGCCAGTCTCCACCCACTGCC-TCCTGGTTTTGTCCTTCCAGGTACAGAATCTGAGAGGAACTGGGGAGAAGGGGCGGCAATGAGGCTCGTCTCCTCTCActcctctttcttccctgccTGTGTTTCTTTGATGGGTTCACATTCTTCTTCTGGCATCAGATGGCAAATGCCGTCGAGGAACTGGTGA--GGAAAAtgggaaggg------------------------------gtgtgtgtgtgtgttagaagggaagaggaaaattCACAAGTGTTCTTTAAGAAAAGCAGACACAGTTACATTCATGAGGCAGCCGGTTGCCAGACTAGTAGGAGTCCTGAAGGAACAACTTGGATTGCA-----TTTTTT-----A-TCGGTTTTTATCTAGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82519951 884 + 85787240 TATATTCCAGTATTTTTAACCCAGTTTGCTTTAGTGTGGTCAGAGAAGCTGGAAATCGAATCAGAGACCTCAGGGGCAACTCA-------GATAAGTCAGCCTGGATGCGAAGGTTACCAGTCTCGGCTCCGTGTGTTTTATTAGAAGCTAGTGGAATGTTATCCTTGACTCTGCCAGCAAAAATCTTCACCTGAGAGGCAACTGGGTTAAGGAAGAACATGCTGAAAATAGAAATTATGAACCATAGCCGAAAACTGTTTATCCACAGCAAC-CACCAGAAGAAGTGAGGGGTGGGAGAGAG-CGCAGCAGTTGGCAATCAGAGCGTGCATATAAGCAAACGGATCATTTCTTCCAAGCTGTGTCTGAGGGCACTCAGTCATGTATACTGAGCTTTCTTCCTGAAAAGATAGTTTAAATCTATGTGGATTGTGAAGTTTTCTTCCTTTCCATAATATGATCATTAACATTTCACTCTCTTTTAGCCAGGAACTTTC-AATAATTTAACAGCGGCTCTTCCAGGCTGCT-GTGAGAAAGGCCAGTCTCCACCCACTGCC-TCCTGGTTTTGTCCTTCCAGGTACAGAATCTGAGAGGAACTGGGGAGAAGGGGAGGCAATGAGGCTAGTCTCCTCTCACTCCTCTTTCTTCTCTGCCTGTGGTTCTTTGATGGGTTCACGTTCTTCTTCTTGCATCAGATGGCAAATGCAGTCGAGGAACTGGTGA--GGAAAATGGGAAGGG----------------------------GTGTGTGTGTGTGTGTTAGAAGGGAAGAGGAAAATTAACAAGTGTTCTTTAAGAAAAGCAGACACAGTTACATTCATGAGGCAGCCGGTTGCCAGACTAGTATGACTCCTGAAGGAACAACTTGGATTGCA-----TTTTTT-----A-TCAGTTTTTATCTAGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14200734 877 - 49578535 TGTATTCTAACATTTTCAACCCCCTTTGCTTTAGTGTGATCAGAGAATCTGGAAATTGAACCAGAGACCTCAGGGGCAACTCAG----ATGAT-AGTGAGCCTGAATGTGAAGGTTACCGTGCTTGGCTCTGCGTGTTTAATTAGGAGCCAGTGACATGTTATCATTGACTCCACCAGCAAAATTCTTCACTTGAGAGGCAACTGGGTTAAGGAAGAACATGCTGGAAATAGAGCTTATGAACCCTAGCTGAAAAC----TATTCACAGCAACTCGCCAGCAGAAGCAAGGGGTGGGAGAGAA-CGCGGCAGCTGGCAATCAGAGCGTGCACAGAAGCAGGAGGATTATTTCTTCCACGCTGAATCTTAGGGCACTCCATCATGTATACTGAGCTTTCTTCCTGAAAAGATAGTTTAAATCTGTGTGGATTGTCAAGTTTTCTTCCTCTCCATAATATGGTCATGAATATTTCACTTTCTTTTAGCCAGGAACTTTC-AATTATTTAACAGCTGCTCTTCCAGGCTGCCTGCGAGAAAGGCGAGTCTCCACCCACTGCC-TCCTGGCTTTATTCTTCCAGG-AAAGAACCTGAGATGTGCTGGGGAGAAGAGGAAGCAATGAGGCTAGG---CTC-CTCTCCTCTCCCTTACCTACCTGTGTTTCTTTCATGGGTTCACATTCTTCCGCTTGCATCAGACAGTAAATGCCATTGAGGAACTGGCGA--TGAAAATGTGAAGTT----------------------------GTGTTTCTGTGTG---TAGAAGGGAAGAGGGAAGTTAGCAAGTGTTCTTTAAGAAACGCAGACACAGTCACATTCATGAGGCAGCCAGTCGCCAGACTTGTATGGCTCCTGAAAGAGCAGCTTTGACTGCA-----TTTTTGT----A-TTCGTGTTTATCTAGAC i calJac3.chr19 C 0 I 315 s mm10.chr1 178787023 764 + 195471971 TGTATTCTCACGTGTTCAAGCAAGTTTACTTCAGTGCAGTCAGAGATCCTGAGAAAGGAGCCAGAGACTTCTCAGTAACCTGAGTAACGGGATCTGC---CCCAGTTATCAAGGTCATT-------GCTCC-TGTGCTTAATTAGAAGCTAGTGGGATGTTATCACTTAGTCTACTAGCAGAGAGCTTC-CTTGAAAGGCA-CAGAGTTAGGGAATGATAGGATG-AAATAGAGTTAATGGACCATATCAG-AGTCTGCTTACCCACAACAAA--TCTGAAAAAAGCAAGAAAGCAGAGAAAGACACAGACACTGCCAACCTTA----TCATATGAG-----------------------TGTGTGTG-------------------------------------------TGTTTAAATCTCCATGGACTTTCAGTTTTTCTTCCTTTGAATAATATAGTCATTATTCTTTTGCTTTCTTTCAGCTTAGGGCTTCCAAATATTTTACCAGCTGCCTTTCTAAGCTGCCTTTGAGAAAGGCTAGTCTCAACCCACCAAC------------CACCTCACAATGAAAAATCTGAGATGCTCTGAGGAAGAGAGAA-------AGACTGCTTTTCCCTCTCTCCCCTCCGTTACCTTCCAATATTTCTTCTCCTGACTTTTGTTCCTCCTTTTGCATCCCATAGTAAAGGGTGT-GGGGTGCTGGTGAAGAGAAGATGCAAAGTT------------------------------GTGTTTGTGTGGGTTGGAAGGGAAGTGGT-TGTTAGCAGGTGTCCTTTAAGAAAATCAGACTTCCTGGCAGTCACAAGGGAACAGGTTGCCC--------------------AAAGAACTTTGAGTGCA-----TCTTGT-----C-TGGGTTGTAACTT---- i mm10.chr1 I 1023 C 0 s canFam3.chr7 36353772 603 + 80974532 TATAGTTTAATATTCTCCACCTGATG-GCTGAGGTATGATCAGAGAAACTGGAAATTGAATCAGAGACCTCAGGGGCAACCCAA----ATGATGAGTCAGCCTGGCTATGAAGGTTATCACTGTTGGCTCTATGTGCTTAATTAGAAGCTAGTGGAATATTATCATTTACTCCACCCACGAAAACCTGCATTTGTGAGGCATCTGGGTGCAGGAAGAACAAGCTGAAAACAATGTTTGTGAGCCATGACTGGAAACTTTTGATCCACAGTG----GCCAGAAAAAG--AGGGGCAGAAGGCAG-GATGG----TTGAATTCTCTGGGTATATATGGACAGGCGG-TGGCTTCCCTAAAGCTCTAGCCGATGG--CCCAGTCATGTATGCTGGGCTTATTTCCTG------------ACATCCATGTGGATGGCCAGATTTTCTTTCTCCCAATGATA--GTCATTAGTATTTGACTTTCTTTCAGCCTGGAACATCC-AGTAGTTTAATA----------------GCCTGTGAGAAGGGTCAGTC-CTGCCCTTCTCC-ACCTGAT--------------------------------------------GGAGGCTGCTTGGC------------------------------CCTGTGCTTCCTC-----------------------------GATAGAGAGTCTAGTCA----------GA--GGGCGCTGGCAGAGG------------------------------------------------AGGCAGGAGCAAAATTAGT---------------------------------TTC-------------TCCCC------------------------------------------------------------------------- i canFam3.chr7 C 0 C 0 a score=401363.000000 s hg38.chr1_KI270759v1_alt 193398 127 + 425601 CAAATCTCTTTTATTTCAGTGATGTCAAGCAGCTCATGTTACCTTCGCCCAAAGAGAAAGATGTATGGGAGCTTCAAACT-CAGGACAATTCTCAATGTCCTTAGCGTTGACTCATATTAAAAATGTT s panTro4.chr1 224946517 126 + 228333871 CAAATCTCTTTTATTTCAGTGATGTCAAGCAGCTCATGTTACCTTCGTCCAAAGAGAAAGATGTATGGGAGCTTCAAACT-CAGGACAATTCTCGATGTCCTTAGCATTGACTCATATTAAAAATGT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226304553 126 - 229942017 CAAATCTCTTTTATTTCAGTGATGTCAAGCAGCTCATGTTACCTTCATCCAAAGAGAAAGATGTATGGGAGCTTCAAACT-CAGGACAATTCTCAATGTCCTTAGCGTTGACTCATATTAAAAATGT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140194515 124 - 143122389 CAAA--TCTTTTATTTCAGTGATATCAAGCAGCTCATGTTACCTTTGTCCAAACAGAAAGATGTATGGGAGCTTCAATCT-CAGGACAATTCTCAATGTCTTTATTGTTGACTCATATTAAAAATGT- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16908855 126 - 229590362 AAAATCTCTTTTATTTCAGTGATGCCAAGCAGCTCATGTTACCTTTGTCCAAAGAGAAAGATGTATGGGAGCTTCAAAAT-CAGGACAATTCTCAATGTCCTTGGCATTGACTAATATTAAAAATGT- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223672161 126 - 227556264 AAAATCTCTTTTATTTCAGTGATGCCAAGCAGCTCATGTTACCTTTGTCCAAAGAGAAAGATGTATGGGAGCTTCAAAAT-CAGGACAATTCTCAATGTCCTTGGCATTGACTAATATTAAAAATGT- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16722505 126 - 220367699 CaaatctcttttatttcagtgatgcCAAGCAGCTCATGTTACCTTTCTCCAAAGAGAAAGATGTATGAGAGCTTCAAAAT-CAGGACAATTCTCAATGTCCTTGGTATTgactaatattaaaaatgt- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82520835 126 + 85787240 CAAATCTCTTTTATTTCAGTGATGCCAAGCAGCTCATGTTACCTTTGTCCAAAGAGAAAGATGTATGGGAGCTTCAAACT-CAGGACAATTCTCAATGTCCTTGGCATTGACTAATATTAAAAATGT- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14201926 126 - 49578535 CAAATCTCTCTTACTTCAGTGCTGTCAAGCAGCTCACGTTACCTTTGTCCAAAGAGAAAGGTGTATGGAAGCTTCAAACT-CAGGACAGGTCTCAACGTCCTTAGCGTTGGCTCATATTAAAAATGT- i calJac3.chr19 I 315 I 288 s mm10.chr1 178787787 127 + 195471971 CAAATCTCTTTTATTTTACTGTCAGTCAATGGCTTCTGTTACTCTTGCTCAAAGAGAAAGGTGTGTGGAGGCTTCAAGCTGGGGGGTGATTCTCTGTGTCCTCAGCATTGACCCATATTAAAAACCC- i mm10.chr1 C 0 C 0 s canFam3.chr7 36354375 55 + 80974532 CAGTCCTCTC----------------------CCTGGCCTACCTGC---------------------------CCACACT-C-------TTCTC----CCCTTG-----------TATCAAgtgtgt- i canFam3.chr7 C 0 C 0 a score=453571.000000 s hg38.chr1_KI270759v1_alt 193525 149 + 425601 AAGAGAACACTAGAATAATAgtgat----------gtgtgtgtgtgtgtgtctgtgtgtgt---ttgtg-----------------GTT----------------------TCCTTTCCTGGAAA--------CCCTTTCTAGGATTAACCTAGGTTAATCCAACATAATGATAGTCTGAAGAGGTTGAATAAATCAGCCCAGATACGC s panTro4.chr1 224946643 171 + 228333871 AAGAGAACACTAGAATAATAGTGAt----------gtgtgtgtgtgtgtgtgtgtgtgtgt---gtgtgtgtgtgtgtgtgtgt-gGTT----------------------TCCTTTCCTGGAGAGG--GTCATCCTTTACAAATATAACCTAGATTAATCCAACATAATGATAGTCTGAAGAGGTTGAATAAATCAGCCCAGATATGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226304679 167 - 229942017 AAGAGAACACTAGAATAATAGTGAt----------gtgtgtgtgtgtgtgtgtgtgtgtgt---gtctg----tgtgtgtttgt-gGTT----------------------TCCTTTCCTGGAAAGG--GTCATCCTTTACAAATATAACCTAGATTAATCCAACGTAATGATAGTCTGAAGAGGTTGAATAAATCAGCCCAGATACAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140194639 166 - 143122389 AAGAGAACACTAGAATAATAgtgat-----------tgtgtatgtgtgtgtctgtgtgtgt---gtgtg----tgtgtgtctgt-gGTT----------------------TCCTTCCCTGGAAAGG--GTCATCCTTTACACATATAACCTAGATTAGTCCAACATCATGATAGTCTGAATAGGTTAAAAAAATCAGCCCAGATACAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16908981 147 - 229590362 AAGAGAACACTAGAATAATAGTGAA------------------gtgtgtgtgtgtgtgtgt---gtgtg-----------------GTT----------------------TCCTTTCCTGGAGAGG--GTCATCCTTTACAAATATAACCTAGATTAATCCAACATCATGATAGTCTGAAAAGGTTAAATAAATCAGCCCAGATACAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223672287 165 - 227556264 AAGAGAACACTAGAATAATAGTGAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt---gtgtg-----------------GTT----------------------TCCTTTCCTGGAGAGG--GTCATCCTTTACAAATATAACCTAGATTAATCCAACATCATGATAGTCTGAAGAGGTTAAATAAATCAGCCCAGATACAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16722631 153 - 220367699 aagagaaCACTAGAATAAtagtgaa------------gtgtgtgtgtgtgtgtgtgtgtgt---gtgtg-----------------gtt----------------------tcctTTCCTGGAGAGG--GTCATCCTTTACAAATATAACCTAGATTAATCCAACATCATGATAGTCTGAAGAGGTTAAATAAATCAGCCCAGATACAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82520961 150 + 85787240 AAGAGAACACTAGAATAATAGTGAA------------------gtgtgtgtgtgtgtgtgtgGGGGGGG-----------------GTT----------------------TCCTTTCCTGGAGAGG--GTCATCCTTTACAAATATAACCTAGATTAATCCAACATCATGATAGTCTGAAGAGGTTAAATAAATCAGTCCAGATACAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14202340 171 - 49578535 aagagaaCACTAGAATAATGgtgtg-------tgtgtgtgtgtgtgtgtgtgtgtgtgtgt---gtgtg----tgtatgtgtgtgGTTT----------------------TCCTTTCCTGGAGAGA--GTCATCCTTTGCAAATGTAACCTAGATTAATCTAACATCATGATGGTATGGAGGGGTTAAATAAATCAGCCCAGATCCGC i calJac3.chr19 I 288 C 0 s mm10.chr1 178787914 141 + 195471971 --AAGAACACTAACATAAAGACACT----------GTGTGTTCACATGTGTGCACATG-GA---GTGGG-------------------------------------------CACTTCATGGAGAG------ACACTGTACAAACATCATCAGGGTTTATCCAACACCCTCTGAGTATGGAGAAGTT---TAAACCAGCCTAGATATAC i mm10.chr1 C 0 I 914 s canFam3.chr7 36354430 175 + 80974532 -------------------------------gtgtgtgtgtgtgtgtgtgtctatgtgtgt---ttgtgcatgtgtgcttgtgtCTATTGGTGGGGGCCAGTATCTTTTCATCCTTTCCTAGAGGGGATGCAACACTTTACAGATATAATCTAGATTGATGCAGCATCATCAGAATATGAAGAGGTTAGATAAATCATTCCAGGTAGAC i canFam3.chr7 C 0 I 1 a score=165984.000000 s hg38.chr1_KI270759v1_alt 193674 58 + 425601 AGGTGATTTAGCCAAGGCTACATGGTGAGTCTAGGGGCA-------AAGCCGAATAAGGGTGGAG------------- s panTro4.chr1 224946814 58 + 228333871 AGGTGATTTAGCCAAGGCTACCTGGTGAGTCTAGGGGCA-------CAGCCGAATCAGGGTGGAG------------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226304846 58 - 229942017 AGGTGATTTAGCCAAGGCTACATGGTAAGTCTAGAGGCA-------AAGCCAAATAGAGGTAGAG------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140194805 58 - 143122389 AGGTGATTTAGCCAAGGCTACATGGTAAGTCTAGGGGCA-------AAGCCAAATAGAGGTAGAG------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16909128 58 - 229590362 AGGTATTTGAGCCAAGGCTACATGGTAAGTCTAGGGGTA-------AAGCCAAATAGAGGTAGAG------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223672452 58 - 227556264 AGGTATTTGAGCCAAGGCTACATGGTAAGTCTAGGGGTA-------AAGCCAAATAGAGGTAGAG------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16722784 58 - 220367699 AGGTGTTTGAGCCAAGGCTACATGATAAGTCTAGGGGTA-------AAGCCAAATAGAGGTAGAG------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82521111 58 + 85787240 AGGTGTTTGAGCCAAGGCTACATAGTAAGTCTAGGGGTA-------AAGCCAAATAGAGGTAGAG------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14202511 56 - 49578535 AGGTGAT--AGCCAAGGCTACATGATAGGCCTGGGGGTA-------AAGCCAAATGCAGATGGAG------------- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36354606 78 + 80974532 AAGTGACGTAGCCAAGGCTACATAGTGAATTTAGAAGTATACTCAGAAGATAAAAAAAAAAAAAAAGTATACTCAGAG i canFam3.chr7 I 1 C 0 e mm10.chr1 178788055 914 + 195471971 I a score=3566592.000000 s hg38.chr1_KI270759v1_alt 193732 1071 + 425601 TCCCTAATTCATAGCTAACCTGCACTGCCATAGTCTATCGGAAGTGAGGTAGAG--ATTATTATCTGATTTTATTATTCCGGGACACGTAAACTTGGCTGA--------GGACACACAGCTCGGAACCCTAGCCCATAGATAAATAGACAACT-TTATAGAGTATAATTTGAGTAAGCCAAAAAGTTTCCAC-TTACATATATTCTAGACCTCCACTTTAAAGTAATTTGAGGGGGACAGAGAGGCAAAGTGAGCAGCATTTCTTCAGAAATCACGTTGT--CTGGAAATAGCTCAGTAGTGCGCATGGCACTCCG-TTAGCCAATTGCT-GTCCTGGGCCTGGAGGGCCATAGAGCTGGACAGAGGCCTTGTTTTGTTTGGTTCGGTTTGTGCTTGTGGTATTCAGGCTGGTAGGTCTGATGGCTGGTAAAGTGCTAAAGC-------AATCATGGGTGCGAG---GTACACAGTGGGGAATGTATCAAACGGTCACTTTCCTAAGGGAGACATTCTCCCCCTTCTAGGAATTTGCTGAGGGTTGG-GCTGAGTGGAAGCGTTTCC----------------TTCCTGCCTGTTCTCT-GAC-TTCCAATGCGCACTTTGTTTTAGGCTGG---------------------------------------------------------------------ATAG---------------------------------------------------------------------CTACACAT----------------------------------------------------------------------------CATCAATGAGATTGCA------------------------------------------------------------------------------------GACAGTCCCTGTGCTTGCTAAGAACGGTGGAAGGTTTTAGGACTACTGTGTCTTACATATTCATTGTCTAAGCCCCCAAGTGTACAGCATTC---AAAGCTATTCCTTCCAGCTCTGAAATTTCTTTGGGTGAAAGCTGTCGACTTTCCTTAGAG----GAA--AAAGAAAGCCATTTCATCAGGGCACTGACCTCATTCCTGTAAGCTTGACTGGCTGAGCCCTGGGAGTGACACCTGTCCCAGTCTTTGGCTTTAGCAAGTGAT----TGATTTGA--AGAAATGGT---ATTGGTCATTTAACCCACAAACTGATTCTGAAATAAGACTCATTTGTAATAAATACATCTCACATTTGAGGACTGAATTCTTCAACACACATTCCAAGTTTTGTCAGTTAGAAAAA--ATACAGTACTTTGTAAAGTATAAAATCCATAACTCTATATAACCCAAACAATAGGTTGAAAACTGG s panTro4.chr1 224946872 1071 + 228333871 TCCCTAATTCATAGCTAACCTGCACTGCCATAGTCTATCGGAATTGAGGAAGAG--ATTATTATCTGATTTTATTATTCCGGGACACGTAAACTTGGCTGA--------GGACACACAGCTCGGAACCCTAGCCCATAGATAAATAGACAACT-TTATAGAGTATAATTTGAGTAAGCCAAAAAGTTTCCAC-TTACATATATTCTAGACCTCCACTTTAAAGTAATTTGAGGGGGACAGAGAGGCAAAGTGAGCAGCATTTCTTCAGAAATCACGTTGT--CTGGAAATAGCTCAGTAGTGCACATGGCTCTCCG-TTAGCCAATTGCT-GTCCTGGGCCTGGAGGGCCATAGAGCCGGACAGAGGCCTTGTTTTGTTTGGTTCGGTTTGTGCTTGTGGTATTCAGGCTGGCAGGTCTGATGCCTGGTAAAGTGCTGAAGC-------AATCATGGGTGCGAG---GTACACAGTGTGGAATGTATCACACGGTCACTTTTCTAAGGGAGACATTCTCCCCCTTCCAGGAATTTGCTGAGGGTTGG-GCTGAGTGGAAGCGTTTCC----------------TTCCTGCCTGTTCTCT-GAC-TTCCAATGCGCACTTTGTTTTAGGCTGG---------------------------------------------------------------------ATAG---------------------------------------------------------------------CTACACAT----------------------------------------------------------------------------CATCAATGAGATTGCA------------------------------------------------------------------------------------GACAGTCCCTGTGCTTGCTAAGAACAGTGGAAGGTTTTAGGACTACTGTGTCTTACATATTCATTGTCTAAGCCCCCAAGTGTACAGCATTC---AAAGCTATTCCTTCCAGCTCTGAAATTTCTTTGGGTGAAAGCTGTCGACTTTCCTTAGAG----GAA--AAAGAAAGCCATTTCATCAGGGCACTGACCTCATTCCTGTAAGCTTGACTGGCTGAGCCCTGGGAGTGACACCTGTCCCAGTCTTTGGCTTTAGCAAGTGAT----TGATTTGA--AGAAATGGT---ATTGGTCATTTAACCCACAAACTGATTCTGAAATAAGACTCATTTGTAATAAATACATCTCACATTTGAGGACTGAATTCTTCAACACACATTCCAAGTTTTGTCAGTTAGAAAAA--ATACAGTACTTTGTAAAGTATAAAATCCATAACTCTATATAACCCAAACAATAGGTTGAAAACTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226304904 1070 - 229942017 TCCCTAATTCATAGCTAACCTGCACTGCCATAGTCTATCGGAAGTGAGGTAGAG--ATTATTATATGATTTTATTATTCCGGGACAGGTAAACTTGGCTGA--------GGACACACAGCTTGGAACCCTAGCCCATAGATAAATAGACAACT-TTATATAGTATAATTTGAGTAAGCCAAAAAG-TTCCAC-TTACATATATTAAAGACCTCCACTTTAAAGTAATTTGAGGGGGACAGAGAGGCAAAGTGAGCAGCATTTCTTCAGAAATCACGTTGT--CTGGAAATAGCTCAGTAGGGCACATGGCTCTCCG-TTAGCCAATTGCT-GTCCTGGGCCTGGAGGGCCATAGAGCTGGACAGAGGCCTTGTTTTGTTTGGTTCGGTTTGTGCTTGTGGTATTCAGGCTAGTAGGTCTGATGCCTGGTAAAGTGCTAAAGC-------AATCATGGGTGCAAG---GTACACAGTGTGGAATGTATCAAACGGTCATTTTCCTAAGGGAGACATTTTCCCCCTTCTAGGAATTTGCTGAGGGTTGG-GCTGAGTTGAAGTGTTTCC----------------TTCCTGCCTGTTCTCT-GAC-TTCCAATGCGCGCTTTGTTTTAGGCTGG---------------------------------------------------------------------ATAG---------------------------------------------------------------------CTAAACAT----------------------------------------------------------------------------CATCAATTAGATTGCA------------------------------------------------------------------------------------GACAGTCCCTGTGCTTGCTAAGAACAGTGGAAGTTTTTAGGACTACTGTGTCTTAGATATTCATTGTCTAAGCCCCCAAGTGTAGAGCATTC---AAAGCTATTCCTTCCAGCTCTGAAATTTCTTTGGGTGAAAGCTGTCGACTTTCCTGAGAG----GAA--AAAGAAAGCCATTTCATCAGGGCACTGACCTCATTCCTGTAAGCTTTACTGGCTTAGCCCTGGGAGTGACACCTGTCCCAGTCTTCGGCTTTAGCAAGTGAT----TGACTTGA--AGGAATGGT---ATTGGTCATTTAACCCACAAACTGATTCTGAAATAAGACTCATTTGTAATAAATACATCTCACATTTGAGGACTGAATTCTTCAACACACATTCTAAGTTTTCTCAGTTAGAAAAA--ATACAGTACTTTGTAAAGTATAAAATCCATAACTCTATATAACCCAAACAATAGGTTGAAAACTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140194863 1071 - 143122389 TCCCTCATTCATAGCTAACCTGCACTGCCATAGTCTATCGGAACTCAGGTAGAG--ATTATTATCTGATTTTATTATTCCAGGACAGGTAAACTTGGCTGA--------GGACACACAGCTCGGAACCCTAGCCCATAGATGAACAGACATCT-TTATATAGTATAATTAGAGTAAGCCAAAAAGTTTCCAC-TTGCATATTTTCTAGACCTCCACTTTAGAGTAATGTGAGGGGGACAGAGAGACAAAGCGAGCAGCATTTCTTCAGAGATCACGCTGT--CTGGAAATAGCCCAGTGGCGCACATGGCTCCCTG-TTAGCCAATTGCT-GTCCTGGGCCTGGAGGGCCATAGAGCTGGACAGAGGCCTTGTTTTGTCTGGTTCGGTTTGTGCTTGTGGTATTCAGGCTGGTAGGTCTGATGCCTGGTAAAGTGCTAAGGC-------AATCATGGGTGCGAG---GTACACATTGTGGAATGTATCAAACGGTCATTTTCCTAAGGGAGACATTCTCCCCCTTCTAGGAATTTGCTGAGGGTCGG-GCTGAGTGGAAGCGTTTCC----------------TTCCTGCCTGTTCTCT-GAC-TTCCAATGCATGCTTTGTTTTGGGCTGG---------------------------------------------------------------------ATAG---------------------------------------------------------------------CTACACAT----------------------------------------------------------------------------CATCAATTAGATTGTA------------------------------------------------------------------------------------GACAGTCCCTGTGCTTGCTAAGAACAGTGGGAGTTTTTAGGACTACTGTGTCTTAGATATTCATTGTCTAAGCCCCCAAGTGTAGAGCATTC---AAAGCTATTCCTTCCAGCTCTGAAATTTCTTTGGGTGAAAGCTGTCGACTTTCCTTAGAG----GAA--AAAGAAAGCCATTTCATCAGGGCACTGACCTCATTCCCGTAAGCTTGACTGGCTGAGCCCTGGGAGTGACACCTGTCCCAGTCGTCGAGTTTAGCAAGTGAT----TGATTGGA--AGAAATGGT---ATTGGTCATTTAACCCACAAACTGATTCTGAAATAAGACTCATTTGTAATAAATACATCTCACATTTGGGGACTGAATTCATCAACACACATTCCAAGTTTTCTCAGTTAGAAAAC--ATACAGTACTTTGTAAAGTATGAAATCCATAACTCCATATAACCCAAACAATAGGTTGAAAACTGG i nomLeu3.chr5 C 0 I 314 s rheMac3.chr1 16909186 1140 - 229590362 TCCCTAATTCATAGCTAACCTGCACTGCCATAGTCTATTGG-AGTGAGGTAGAA--ATTATAATCTGATTTTATTATTCCAGGACAGGTAAACTTGGCTGA--------GGACACACAGCTTGGAACCCTAGCCCACAGATAAATAGACAACT-TTATATAGTATAATTTGAGTAAGCCAAAAAGTTTCCAC-TTACATATTTTCTAGACCTCTACTTTAGAGTAATCTGAGGGGGATAGAGAGGCAAAGTGAGCAGCATTTCTTCAGAAATCACGTTGT--CTGGAAAGAGCTCAGTAGCACACATGGCTCTCTG-TTAGCCAATTGCTGGGCCTGGGCCTGGAGGGCCATAGAGCTGGACAGAGGCCTTGTTTCATTTGATTTGGCTTCTGCTTGTGGTATTCCGGCTGGTAGGTCTGATGCCTGGTAAAGTGCTAAAGC-------AGTCATGGGTGCGAG---GTACACAGTGTGGAACGTGTCAAAGGGCCATTTTCCTAAGGGAGATATTCT-CCCCTTCTAGGAATTT-------------GCTGAGCGGAAGCGTTTCC----------------TTCCTGCCTGTTCTCT-GAC-TTGCAACGTGCGCTTTGTTTTAGGCTGG---------------------------------------------------------------------ATAG---------------------------------------------------------------------CTATACAT----------------------------------------------------------------------------CATCAATGAGATTATAGGCAGTCCCTGTGCTTGCTAAGAACAGTGGTGTGCGCTTTGTTTTAGGCTGTTTTAGGCTTTATACATCATCAATGAGATTATAGACAGTCCCTGTGCTTGCTAAGAACAGTGGGAG-TTTTAGGACTACTGCGTCTTAGATATTCATTTTCTAAGCCCCCAAGTGTAGAGCATCC---AAAGCTATTCCTTCCAGCTCTGAAATTTCTTTGAGAGAAAGTTGTCAACTTTCCTTAGAG----GAA--AAAGGAAGCCATTTCATCAGGGCACTGACCTCATTCCTGCGAGCTTGGCTGGCTGAGCCCTGGGAGTGACACCTGTCCCGGTCTTCGGCTTTAGCAAGTGAT----CGATTTGA--AGAAATGGT---ATTGGTCATTTAACCCACAAACTGATTCTGAAATAAGACTCATTTGTAATAAATACATCTCACA-CTGAGGACTGAATTCTTCAACACACATTCCAAGTTTTCTCGATTAGAAAAA--ATACAGTACTTTGTAAAGTATAAAATTCATAACTCTGTATAACCCAAACAATAGGTTGAAACCTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223672510 1056 - 227556264 TCCCTAATTCATAGCTAACCTGCACTGCCATAGTCTATTGG-AGTGAGGTAGAA--ATTATAATCTGATTTTATTATTCCAGGACAGGTAAACTTGGCTGA--------GGACACACAGCTTGGAACCCTAGCCCACAGATAAATAGACAACT-TTATATAGTATAATTTGAGTAAGCCAAAAAGTTTCCAC-TTACATATTTTCTAGACCTCTACTTTAGAGTAATCTGAGGGGGATAGAGAGGCAAAGTGAGCAGCATTTCTTCAGAAATCACGTTGT--CTGGAAAGAGCTCAGTAGCACACATGGCTCTCTG-TTAGCCAATTGCTGGGCCTGGGCCTGGAGGGCCATAGAGCTGGACAGAGGCCTTGTTTCATTTGATTTGGCTTCTGCTTGTGGTATTCCGGCTGGTAGGTCTGATGCCTGGTAAAGTGCTAAAGC-------AGTCATGGGTGCGAG---GTACACAGTGTGGAACGTGTCAAAGGGCCATTTTCCTAAGGGAGATATTCT-CCCCTTCTAGGAATTT-------------GCTGAGCGGAAGCGTTTCC----------------TTCCTGCCTGTTCTCT-GAC-TTGCAATGCGTGCTTTGTTTTAGGCTGG---------------------------------------------------------------------ATAG---------------------------------------------------------------------CTATACAT----------------------------------------------------------------------------CATCAATGAGATTATA------------------------------------------------------------------------------------GACAGTCCCTGTGCTTGCTAAGAACAGTGGGAG-TTTTAGGACTACTGCGTCTTAGATATTCATTTTCTAAGCCCCCAAGTGTAGAGCATCC---AAAGCTATTCCTTCCAGCTCTGAAATTTCTTTGAGAGAAAGTTGTCAACTTTCCTTAGAG----GAA--AAAGGAAGCCATTTCATCAGGGCACTGACCTCATTCCTGCGAGCTTGGCTGGCTGAGCCCTGGGAGTGACACCTGTCCCAGTCTTCGGCTTTAGCAAGTGAT----CGATTTGA--AGAAATGGT---ATTGGTCATTTAACCCACAAACTGATTCTGAAATAAGACTCATTTGTAATAAATACATCTCACA-CTGAGGACTGAATTCTTCAACACACATTCCAAGTTTTCTCGATTAGAAAAA--ATACAGTACTTTGTAAAGTATAAAATTCATAACTCTGTATAACCCAAACGATAGGTTGAAACCTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16722842 1056 - 220367699 TCCCTAATTCATAGCTAACCTGCACTGCCATAGTCTATTGG-AGTGAGGTAGAA--ATTATAATCTGATTTTATTATTCCAGGACAGGTAAACTTGGCTGA--------GGACACACAGCTTGGAACCCTAGCCCACAGATAAATAGACAACT-TTATATAGTATAATTTGAGTAAGCCAAAAAGTTTCCAC-TTACATATTTTCTAGACCTCTACTTTAGAGTAATCTGAGGGGGATAGAGGGGCAAAGTGAGCAGCATTTCTTCAGAAATCACGTTGT--CTGGAAAGAGCTCAGTAGCACACATGGCTCTCTG-TCAGCCAAttgctgggcctgggcctggagggCCATAGAGCCGGACAGAGGCCTTGTTTCGTTTGATTTGGCTTCTGCTTGTGGTATTCAGGCTGGTAGGTCTGATGCCTGGTAAAGTGCTAAAGC-------AGTCATGGGTGCGAG---GTACACAGTGTGGAACGTGTCAAAGGGCCATTTTCCTAAGGGAGATATTCT-CCCCTTCTAGGAATTT-------------GCTGAGTGGAAGCGTTTCC----------------TTCCTGCCTGTTCTCT-GAC-CTGCAATGCGTGCTTTGTTTTAGGCTGG---------------------------------------------------------------------ATAG---------------------------------------------------------------------CTATTCAT----------------------------------------------------------------------------CATCGATGAGATTATA------------------------------------------------------------------------------------GACAGTCCCTGTGCTTGCTAAGAACAGTGGGAG-TTTTAGGACTACTGCATTTTAGATATTCATTTTCTAAGCCCCCAAGTGTAGAGCATCC---AAAGCTAttccttccagctctgaaattTCTTTGGGAGAAAGTTGTCAACTTTCCTTAGAG----GAA--AAAGGAAGCCATTTCATCAGGGCACTGACCTCATTCCTGCGAGCTTGGCTGGCTGAGCCCTGGGAGTGACACCTGTCCCAGTCTTCGGCTTTAGCAAGTGAT----CGATTTGA--AGAAATGGT---ATTGGTCATTTAACCCACAAACTGATTCTGAAATAAGACTCATTTGTAATAAATACATCTCACA-TTGAGGACTGAATTCTTCAACACATGTTCCAAGTTTTCTCAGTTAGAAAAA--ATACAGTACTTTGTAAAGTATAAAATTCATAACTCTGTATATCCCAAACAATAGGTTGAAACCTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82521169 1057 + 85787240 TCCCTAATTCATAGCTAACCTGCACTGCCATAGTCTATTGA-AGTGAGGTAGAG--ATTATAATCTGATTTTATTATTCCAGGACAGGTAAACTTGGCTGA--------GGACACAGAGCTTGGAACCCTAGCCCACAGATAAATAGACAACT-TTATATAGTATAATTTGAGTAAGCCAAAAAGTTTCCAC-TTACATATTTTCTAGACCTCCACTTCAGAGTAATCTGAGGGGGATAGAGAGGCAAAGTGAGCAGCATTTCTTCAGAAATCACGTTGT--CTGGAAAGAGCACAGTAGCACACATGGCTCTCTG-TTAGCCAATTGCTGGGCCTGGGCCTGGAGGGCCATAGAGCTGGACAGAGGCCTTGTTTCATTTGATTTGGCTTCTGCTTGTGGTATTCAGGCTGGTAGGTCTGATGCCTGGTAAAGTGCTAAAGC-------AATCATGGGTGCGAG---GTACACAGTGTGGAATGTGTCAAAGGGCCATTTTCCTAAGGGAGATATTCT-CCCCTTCTAGGAATTT-------------GCTGAGTGGAAGCGTTTCC----------------TTCCTGCCTGTTCTCT-GAC-TTGCAATGCGCGCGTTGTTTTAGGCTGG---------------------------------------------------------------------ATAG---------------------------------------------------------------------CTATAGAT----------------------------------------------------------------------------CATCAATGAGATTATA------------------------------------------------------------------------------------GACAGTCCCTGTGCTTGCTTAGAACAGTGGGAGTTTTTAGGACTACTGCATCTTAGATATTCATTTTCTAAGCCCCCAAGTGTAGAGCATCC---AAAGCTATTCCTTCCAGCTCTGAAATGTCTTTGGGAGAAAGTTGTCAACTTTCCTTAGAG----GAA--AAAGGAAGCCATTTCATCAGGGCACTGACCTCATTCCTGCAAGCTTGGCTGGCTGAGCTCTGGGAGTGACACCTGTCCCAGTCTTCGGCTTTAGCAAGTGAT----CAATTTGA--AGAAATGGT---ATTGGTCATTTAACCCACAAACTGATTCCGAAATAAGACTCATTTGTAATAAATACATCTCATA-CTGAGGACTGAATTCTTCAACACTCGTTCCAAGTTTTCTCGGTTAGAAAAA--ATACAGTACTTTGTAAAGTATAAAATTCATAACTCTGTATAACCCAAACAATAGGTTGAAACCTGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14202567 1065 - 49578535 TCCCTAATTCCTGACTAACTAGCACTGCCGTATTCTATCGG--ATGTGATAGAG--ATTATTATCTGATTTTATTATTCCAGGACAGGTGAACTTGGCTGA--------GGACACACAGCTCGGAACCCTAGCCCATAGATAAATAGGTAACT-TTATATAGTAAAATTGGAGTAAGCCGAAGAGTTTCCAC-TTACATATTTTCTATCCCTCCACTTTAGAGTAATTTGAGGGGG-CAGAGAGGCAAAGTCAGCAGCACTTCTTCAGAAATTGTGCTTT--CTGGAAACAGCTTGGCAGCACATACGGCTCTCAG-GTGAGCCCCTGCT-GTCCTGGGCCTGGAGGGCCGTCCAGCCGGACAGCGGCCTCGTTTCGTGGGGCTGAGTTTCTTCTTGTGGTACTCAGGCTGGTAGGTCTGAAGCCTGGAAAAGTGCTGAAGC-------AATCATGGGTGCCAG---CTGCACAGTGCGGAATGTATAAAGGGGTCATTTTCCTAAGGG-GACATTCTTCCCCTTGTAGGGTGTTGCTGAGGGTTGG-TCTGAGCGGAAGCATTTCC----------------CTTTTGCCTGTTCTCT-GAC-TTCCAGTGTGCACTTTGTTTTTGGCTGG---------------------------------------------------------------------ATGG---------------------------------------------------------------------CTACCCAT----------------------------------------------------------------------------CGTCAGTCAGCATGCA------------------------------------------------------------------------------------GACAGTCCCTGTGCTTGCTAAGAACAGTGGCAGTTTTTAGGTCTACTGTGGCTTAGATATCCATCTTCTAAGCCCACAAGGGTAGAGCATTC---AAAGCGATTCCTTCCAGCTCTGAAATTTCTCTGGGTGAAAATTGTTCACTTTCCTTGGA-----GAA--AAAGTAAGCCATGTCATCAGGGCCCTGACCTCATTCCTGTGAGCTGGACTGGCTGAGCTCTGGGAGTGACACCTGTTCCAGG-TCTGGCTTTAGCAAGGGAT----TGATTTGA--AGAAATAGT---ATTGGTCATTTTACCCACAGACTGCTTCTCAAGGAAGACTTGTTTGTAATAATTGTAACTCACATTTGAGGACTGAATTCTTCAACACACATTCCAAGTTTTCCCAGTTAGAAAAA--ATACGGTACTTTGTAAATTGTATGATCCGTAACTCTATATGACCCAAACAATAGGTTGAAAACTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178788969 1211 + 195471971 TCCCTACTTCAGATACAATCTGTGCTACCTCATTCTATAAG-CAAAAACTATGT--CTTACTACCTGATTTTATTTCTCCAAGTCAGGTAAACTTGATTAA--------ATTCCCAGTGGGTGGATCCCTAACTCATAGATAAGAAGACCTGT-TTATACAGCA-AATTTGAG-AAGCCTAACAGTTTCCACATTACAGTTTTTCTA--CTTCCACTTAGAAGTTACACAAGGAG--TCAGGACACACAGC-AGTAATGCTACTTAGGAAATCCCATTCTTCTTGGACACAGATTGTTAGTACACAGGGCTTTCAGATTCACCTTGGGGTGGGGCTGAGGATGGAGGGATGTGCAACTG------------------------------TTCGCTGGTGGTCTCCA-----GTAGAGCTGATGGCCAGC-AGGAGCTAAAGCCTCAGTAATACAAAGTTGCAAA---GTAAATGAACTGGAAGATGC--AGGGCTTACTTTCTCATG------------CTTCTGTCTGGATTTGGCTAAGGATTG--GCTGAGCCAGGGTCATTCCCTGAGTAGACTATATTTTCTTTTCTACCCTGTAGAC-TTCAGATGCTCACCTTG---gaggctggtgacatggcacagtgggtaaagatgcctactgccaggtctgattaactgcttgattccccagaacctacatagtggacagaaagaaccaactcttacaaactgtcctttattctccacatacaaaccttagtaagcacacccccacacatacatacacaCATGCACCATATGTTCACACACACACACACAAAACATCCCTTGTTTGTGAGACAGAGTAGTTCTTGCCGTCAATTGAAGTACA------------------------------------------------------------------------------------GACAGCTCCAACTCTTGTTAGGATCAGCAGGAGTTTCCA--------GCATCCTAGACATCCATT-TCTGGGTT------TGTGGAGCATGC---AAAGGTATTCCTTCCAG-TTTGTGATTCTTGAGGATAAAAGTTGCTGGCTTTCCTTTGGA----CAACCACACCAGAGCATCTTGCTAGGACATTGGTCTCATTCCTGTGAGCTTGATTGACAGGGTGGTGGGAATAACATCTGCCCCACTCTGCAGCTTTAGAAAGTT-C----TGCTTTGATTGGAAATGGTCAGATTGGTCATTCCGCGCATATCCTGATACC-----AAGGTTCCTTTGC----------------------------AGGTCTTCAACACACATTCTAAGTTTCCCCAGTTAAAAAAATTATGCCGCTCTCTGTAAAGCACAAAACTCGTGACACTGTATAATCCAAATGATAGGCTGGAAACTGG i mm10.chr1 I 914 C 0 s canFam3.chr7 36354684 1059 + 80974532 TCCCTACTTCCCACTGACTTCGTCCTGCCATGTTCCCTGGGACATAAGGTAAGATTGTTGTCACCTGATTGTATTTTTCCAGGACAAGTAGACTTGGCTGAATTGCTGCAGGCACACAG---------CTGACCCACAGATGAATAGGTAACCACTATGT-TTGTAATTTTAGTGACTTGGAAAGTCTCCAC-CCACAGATGTTCTAAGTCTCCGCTTGTAAGGCAGTTAAGGGGGCCACGGGGGCACAACCAGCAGCTTGGCTTCAGAAATC---------TTAGAAGTGGCTTATTAATACACATGGCTTTCAGATGAACCAGTTGAT-GCCCTGGGCCCGAAGGGGTGGAAAACTGGACCGAAACCTTGTTTTGT-----TGGGGTTTCACTTGTGATGTTCAGGCTGGTAGCTCTGGAGCCCAGCAAAGTGCCGAAGC-------ATTCATGCATGCAAGGTAGTAAATGGTATAGAAAGTAGGAAGAGGTCATCTTCCTAAGGGGGTGATTCT--CTCTTCTGCAAGTCTGCTGAGGCTTGGCCTTGGGAGGAAATGACT------------------TTCCTCCCGACTCTCT-GACTTTCCAATGCACACTTTGTTTCGGGCTGG---------------------------------------------------------------------GTAG---------------------------------------------------------------------CTGCTTGT----------------------------------------------------------------------------CAGTAATGAGAACTTA------------------------------------------------------------------------------------GACCACTCCGACTCTTGCTAAGAACACTGACAGTTTTTAGGACTACCATGACTTAGGCATCCATGCTCTGAACCCT--AGAGCAGAGCATTCGGGGGGGGTATTCCTTCCAGTTCTGAAATTCTTTAGAATG-AAGCTGCTGACTTCCCTGGGAGAACTGAA--AAAGTAGGGCACTTTGCCAAGGTGCTGACCTCACACCTGTGAGC-----------AGGCCTGGCAGTGACACCTGTCCCAGCCTTTAGCTTTATAAAGTGATGATCTGATTTGA--AGAAATAGT---GTTGATCACTTAGCCCACATCCTGATTCCTATGTAAGACTCAGTTGTGATGAAGACATTTCACCTTTGAGGACTGAGTTCTTTCACACACACTCTAAGTCTTCCGAGTTAGAGAAA--ATACATTACTTCATAAAGTGCAAAGCCTGTAACACTATATAACTCAAACAATGGGTTGAAACCCGG i canFam3.chr7 C 0 C 0 a score=2736497.000000 s hg38.chr1_KI270759v1_alt 194803 780 + 425601 GTTTGTTGTAAGTAACGTATTAATAACACCTGGTGTAATACCTGTTAACATGCTCGGTGCCTGAAGC-AAATTGGCAAGCGTTTCATCTCCTTTTGCCAATAACTTGTCAGAAACTGACTGAGGGTTCCTTCCAAACTCTCAGAAGAACATCCAAGGCCAGGCAGCTTATGTAGCTCTTGAACTTCACCAGGGCGAGGGCTGGGCCCCGGCCAACTAGAG--AAGCCACAGCTGAATCAGAGGAGGAATTCCGAAGAGCTGGGCAGGGGCCTCCTGATGGCGAGATGCTGAATGGGATAAGAATGTGATGAATTAATTGATTTGTATCTTACGCAAGAGCTGCAGTGAGGAT---GGTGAAATTCATTTCCTTCCATAGGTCCTGCCCCTTTCTTTGTAAGTCAGTCAGCAGCATTGCCAGAGCTGCCTAAAATGCCACCTCCATCCCCTGACAATCAAAGAGG----------------------------------------------------------------------------------AATCTTT----------------------------------------TCAT----------------------GCAGGCTGAGTTCTAATGACGAACTCA-----------------------------TTAAAATCAAgaccactta--------------------------------------ctatgcgta-------------------------tgtgatgtgt--tataagcactttcagatgcatgattttaaacattctggccatcctgtgaggtcagtacca-tattatccccatttcgtggacagaacagtcgtttagagaacttcagtaatttactcgaggcaatctggtgtga---aaagtttgagagaggacactgcaaccaggccacctgggt--ccagatcttggccttgccacttacgagctatgtgaccttgagaaaaggtcttaacttctttgtgtttcaatgtc s panTro4.chr1 224947943 788 + 228333871 GTTTGTTGTAAGTAACGTATTAATAACACCTGGTGTAATACCTGTTAACATGCTCGGTGCCTGAAGC-AAATTGGCAAGCGCTTCATCTCCTTTTGCCAATAACTTGTCAGAAACTGACTGAGGGTTCCTTCCAAACTCTCAGAAGAACATCCAAGGCAAGGCAGCTTATGTAGCTCTTGAACTTCACCAGGGCGAGGGCTGGGCCCCGGCCAACTAGAG--AAGCCACAGCTGAATCAGAGGAGGAATTCCGAAGAGCTGGGCAGGGGCCTCCTGATGGCGAGATGCCGAATGGGATAAGAATGTGATGAATTAATTGATTTGTATTTTACGCAAGAGCTGCAGTGAGGAT---GGTGAAA-TCATTTCCTTCCATAGGTCCTGCCCCTTTCTTTGTAAGTCAGTCAGCAGCGTTGCCAGAGCTGCCTAAAATGCCACCTCCATCCCCTGACAATCAAAGAGG----------------------------------------------------------------------------------AATCTTT----------------------------------------CTAT----------------------GCAGGCTGAGTTCTAATGACGAACTCAGCC---------------------TTCGTTAAAAATCAAgaccactta--------------------------------------ctatgcata-------------------------tgtgatgtgt--tataagcactttcagatgcatgattttaaacattctggccatcctgtgaggtcagtaccattattatccccatttcgtggacagaacagttgtttagagaacttcagtaatttactcaaggcgatctggtgtga---aaagtttgagagaggacactgcagccaggccacctgggt--ccagatcttggccttgccactcacgagctatgtggccttgagcaaaggtcttaacttctttgtgtttcaatgtc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226305974 788 - 229942017 GTTTCTTGTAAGTAACGTATTAATAACACCTGGTGTAATACCTGTTAACATGCTCGGTGCCTGAAGC-AAATTGGCAAGCGCTTCATCTCCTTTTGCCAATAACTTGTCAGAAACTGACTTAGAGTTCCTTCCAAACTCTCAGAAGAACATCCAAGGCAAGGCAGCTTATGTAGCTCTCGAACTTCACCAGGGCGAGGGCTGGGCCCCGGCCAACTAGAG--AAGCCACAGTGGAATCAGAGGAGGAACTCCGAAGAGCTGGGCAGGGGCCTCCTGATGGCGAGATGCTGAATGGGATAAGAATGTGATGAATTAATTGATTTGTATCTTACACAAGAGCTGCAGTGAGGAT---GGTGAAATTCATTTCCTTCCATAGGTCCTGCCCCTTTCTTTGTAAGTCAGTGAGCAGCGTTGCCAGAGCTGCCTCAAATGCCACCTCCATCCCCTGACAATCAAAGAGG----------------------------------------------------------------------------------AATCTTT----------------------------------------CTAT----------------------GCAGGCGGAGTTCTAATGACGAACTCAGCC---------------------TTCG-TTAAAATCAAgaccgctta--------------------------------------ctacgtgta-------------------------tgtgatgtgt--tataagcactttcagatgcacgattttaaacattccggccatcctgtgaggtcagtaccattattatccccgtttcatggacagaacagtagtttagagaacttcagtaatttacacgaggcaatctggtgtgg---aaagtttgagagaggacactgcaaccaggccacccgggt--ccggatcttggccttgccacttacgagctatgtgaccttgagaaaaggtcttaacttctttgtgtttcaatgtc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140196248 790 - 143122389 GTTTGTTGTAAGTAATGTATTAATAACACCTGGTGTAATACCTGTTAACATGCTCGGTGCCTGAAGC-AAATTGGCAAGCGCTTCATCTCCTTTTGCCAATAACTTGTCAGAAACTGACTTAGAGTTCCTTCCAAACTCTCAGAAGAACATCCAAGGCAAGGCAGCTTATGTAGCTCTTGAACTTCACCAGGGCGAGGGCTGGGCCCCGGCCAACTAGAGAAAAGCCACAGCTGAATCAGAGGAGGAATTCCGAAGAGCTGGGCAGGGGCCTCCTGACGGCAAGATGCTGAAAGGGATAAGAATGTGATGAATTAATTGATTTGTATCTTACACAAGAGCTGCAGTGAGGAT---GGTGAAATTCATTTCCTTCCATAGGTCCTGCCCCTTTCTTTGTAAGTCAGTGAGCGGCGTTGCCAGAGCTGCCTAAAATGCCACCTCCATCCCCTGACAATCAAAGAGG----------------------------------------------------------------------------------AATCTTT----------------------------------------CTAT----------------------GCAGGCTGAGTTCTAATGACAAACTCAGGC---------------------TTCG-TTAAAATCAAgaccgctta--------------------------------------ctacgcgta-------------------------tgtgatgtgt--tataagcactttcagatgcatgattttgaacattctagccatcctgtgaggtcagtaccattattatccccatttcgtagacggaacagtagtttagagaacttcagtaattgacacgaggcaatctggtgtga---aaagtttgagagaggacactgcaaccagaccacctgggt--ccagatcttggccttgccacttacaagctacgtgaccgtgagaaaaggtcttaacttctttgtgtttcaatttc i nomLeu3.chr5 I 314 C 0 s rheMac3.chr1 16910326 784 - 229590362 GTTTGTTGTAAGTAATATATTAATAACACCTGGTGTAATACCTGTTAACATGCTCGGTGCCTGAAGC-AAATTGGCAAGCGCTTCCTCTCCTTTTGCCAATAACTTGTCAGAAACTGAATTAGAGTTCCTTCCAAACTCTCAGAAGAACATCCAAGGCAAGACAGCTTATGTAGCTCTCGAACTTCACCAGGGCGAGGGCTGGGCGCCGGCCAACTAGAG--AAGCCACAGCTGAATTAGAGGAGGAATTCCGAGGAGCTGGGCAGGGGCCTCTTGATGGCAAGATGCTGAATGGGATAAGAATGTGATGAATTAATTGATTTGTATCTTATACAAGAGTTGCAGTAAGGAT---GGTGAAATTCATTTCCTTCCATAGATCCTGCCCCTTTCTTGGTAAGTCTGTGAGCAGCGTTGCCAGAGCTGCCTAAAACGCCACCTCCCTTCCCTGACAATCAAAGAGG----------------------------------------------------------------------------------AATCTTT----------------------------------------CGAG----------------------GCAGCCTGAGTGCTAATGATGAACTCAGGC---------------------TTCG-TTAAAAGCAAgaccaccta--------------------------------------ctatgcgta-------------------------tgtgatgtgt----taaggactttcagatgcatgattttaaacattctggccatcctgtgaggtcagtaccattattatccccatttcgtggaccgaacagtcgtttagagaacttcagtaatttacacgaggcaatctggtgtga---aaagttt--gagaggagactgcagcccggccacccgggt--ccagatcttggccttgccacttacgagctatgtgaccttcagaaaaggtcttaacttctttgtgtttcaatttc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223673566 786 - 227556264 GTTTGTTGTAAGTAATATATTAATAACACCTGGTGTAATACCTGTTAACATGCTCGGTGCCTGAAGC-AAATTGGCAAGCGCTTCCTCTCCTTTTGCCAATAACTTGTCAGAAACTGAATTAGAGTTCCTTCCAAACTCTCAGAAGAACATCCAAGGCAAGACAGCTTATGTAGCTCTCGAACTTCACCAGGGCGAGGGCTGGGCGCCGGCCAACTAGAG--AAGCCACAGCTGAATTAGAGGAGGAATTCCGAGGAGCTGGGCAGGGGCCTCTTGATGGCAAGATGCTGAATGGGATAAGAATGTGATGAATTAATTGATTTGTATCTTATACAAGAGTTGCAGTAAGGAT---GGTGAAATTCATTTCCTTCCATAGATCCTGCCCCTTTCTTGGTAAGTCTGTGAGCAGCGTTGCCAGAGCTGCCTAAAACGCCACCTCCCTTCCCTGACAATCAAAGAGG----------------------------------------------------------------------------------AATCTTT----------------------------------------TGAG----------------------GCAGCCTGAGTGCTAATGATGAACTCAGGC---------------------TTCG-TTAAAAGCAAgaccaccta--------------------------------------ctatgcgta-------------------------tgtgatgtgt----taaggactttcagatgcatgattttaaacattctggccatcctgtgaggtcagtaccattattatccccatttcgtggaccgaacagtcgtttagagaacttcagtaatttacacgaggcaatctggtgtga---aaagtttgagagaggagactgcagcccggccacccgggt--ccagatcttggccttgccacttacgagctatgtgaccttcagaaaaggtcttaacttctttgtgtttcaatttc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16723898 786 - 220367699 GTTTGTTGTAAGTAATATATTAATAACACCTGGTGTAATACCTGTTAACATGCTCGGTGCCTGAAGC-AAATTGGCAAGCGCTTCCTCTCCTTTTGCCAATAACTTGTCAGAAACTGAATTAGAGTTCCTTCCAAACTCTCAGAAGAACATCCAAGGCAAGACAGCTTATGTAGCTCTCGAACTTCACCAGGGCGAGGGCTGGGCGCCGGCCAACTAGAG--AAGCCACAGCTGAATTAGAGGAGGAATTCCGAGGAGCTGGGCAGGGGCCTCTTGATGGCAAGATGCTGAATGGGATAAGAATGTGATGAATTAATTGATTTGTATCTTATACAAGAGTTGCAGTAAGGAT---GGTGAAATTCATTTCCTTCCATAGATCCTGCCCCTTTCTTGATAAGTCTGTGAGCAGCGTTGCCAGAGCTGCCTAAAACGCCACCTCCCTTCCCTGACAATCAAAGAGG----------------------------------------------------------------------------------AATCTTT----------------------------------------CGAG----------------------GCAGCCTGAGTGCTAATGATGAACTCAGGC---------------------TTTG-TTAAAATCAAGACCACCTA--------------------------------------CTACACGTA-------------------------TGTGATGTGT----TAAGGACTTTCAGATGCATGATTTTAAACATTCTGGCCATCCTGTGACGTCAgtaccattattatccccatttcatggACCAAACAGTCGTTTAGAGAACTTCAGTAATTTACACGAGGCAATCTGGTGTGA---AAAGTTTGAGAGAGGAGACTGCAACCCGGCCACCCGGGT--CCAGATCTTGGCCTTGCCACTTACGAGCTATGTGACCTTCAGAAAAGGtcttaacttctttgtgtttcaatttc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82522226 786 + 85787240 GTTTGTTGTAAGTAATATATTAATAACACCTGGTGTAATACCTGTTAACATGCTCGGTGCCTGAAGC-AAATTGGCAAGCGCTTCCTCTCCTTTTGCCAATAACTTGTCAGAAACTGAATTAGAGTTCCTTCCAAACTCTCAGAAGAACATCCAAGGCAAGACAGCTTATGTAGCTCTTGAACTTCACCAGGGCGAGGGCTGGGCGCCGGCCAACTAGAG--AAGCCACAGCTGAATTAGAGGAGAAATTTCGAAGAGCTGGGCAGGGGCCTCCTGACGGCAAGATGCTGAATGGGATAAGAATGTGATGAATTAATTGATTTGTATCTTATACAAGAGTTGCAGTAAGGAT---GGTGAAATTCATTTCCTTCCATAGATTCTGCCCCTTTCTTGGTAAGTCTGTGAGCAGCGTTGCCAGAGCTGCCTAAAACGCCACCTCCCTTCCCTGACAATCAAAGAGG----------------------------------------------------------------------------------AATCTTT----------------------------------------CGAG----------------------GCAGCCTGAGTGCTAATGATGAATTCAGGC---------------------TTCG-TTAAAAGCAAgaccaccta--------------------------------------ctatgtgta-------------------------tgtgatgtgt----taaggactttcagctgcatgattttaaacattctggccatcctgtgacgtcagtaccattattatccccattttatggaccgaacagtcgtttagagaacttcagtaatctacacgaggcaatctggtgtga---aaagtttgagagaggagactgcaacccggccacccgggt--ccagatcttggccttgccacttacgagctatgtgatcttcagaaaaggtcttaacttctttgtgtttcaatttc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14203632 772 - 49578535 GTTTGTTGT-----ATATATTAGTAACACCTGGTGGAATACCTGTTAACATGCTGGGTGCCTGGAGC-AAATTGGC-AGTGCTTCATCTGCTTTTGCCAGTAACTTGTCAGTAACTGACTTAGAGTTCCTTTCAAACTCTCCGAAGAACGTCCAAGACCAGGCAGCCTATGTAGCTCTCAGACGTCACTGGAGCAAGGGCTGGGCCCAGGCCAACTGGAG--AAGTCCCAGCTGAATTAGAGGAGGAATTCCAAAGAGCTTGA-AGGGGCCTCCTGACGGCCGGATGCTGAATGGGATAAGAATGTGATGAATTAATCGATTTGCATCTTACACAAGAGTCTCAGTGAGGATAAAGGTAAAACCCGTTTCCTTCGGTAGGTCCTCCCCCTTTCTTAGTAACTCAGTGAGTCGCATTGCTA-----GCTTAAAATGCTACCTCCATCCCATGAGAATCAAAGAGG----------------------------------------------------------------------------------ACTCTTT----------------------------------------CTAT--------------------------CCCGAGTTCTAACGAAGAACTCAGCC---------------------TTTG-CTAAAATCAAGACCACTCA--------------------------------------CTACAAATA-------------------------TGTGAtgtgc----gaagcacttttagatgcgttattttaaacattccggcaatcccgtgaggtcagtaacattactgtctgcatttcagggacagaaccgtattttagagaacttcagtaatttacatgaggcggtctggtgtaa---agagctggagagacaacactggaa-caggcctcctgggt--tcaaatcttagccttgccacttactggctatgtgaccttaaggaaaggtcttagcttatttgtgtttcaatttc i calJac3.chr19 C 0 C 0 s mm10.chr1 178790180 838 + 195471971 GTTTGTTGTAAGTAACCTATGAACAGCACCTGGTGTAATCCCTGTTAACACGCTCAGTGCCTAGAGCGAAACTGGCAAGCACAGCTTCAACTCTTGCCAGTCACTTGTCAAACCCCAACCTAGGGTTCCTTCCAAACTCTCAGAAGAAGGTCCAAGACACAAAACCTCATGCAGTCCTCAGACTCTACCAGGGCAAGGGCTGGATCTCAGCCAATGTAAA--ACATAACCTCCGAATTAGAAAAGGAATTCTGTAGCGTTGGGCAGGGGCCTC-GGGTGTCAAGATGCTGA-----TTACGAATGTGAAGGGTTG------TCGTGTCATGCTTAGGAGTCAGAGTGAGGATAAAGGTGAAACTTCCTTCCTTCAGCAGGTCTGCTCCC-----------------GAGAAGCA-TGCTAGAGATATAGAAAATGCTTC--CCCATCCATGACAAACAAAGAGGCACCATCTTCTCCAGCCTAGGATTCAGCAATCCGAATGCCAGAGATCAGAGAGGCAGGCAGGCCGTGCAAAGCAATTTTGCAGATCTTT----------------------------------------CTAGAGGGTGCGTAATTGAGTCTCATGCAGGCAGAATACTGGGGAGGGAT---AGT---------------------TACA-ACACAGTCAAGAT--GTTA--------------------------------------CTAGGCAC--------------------------TGTGGTGCTG----CAGGCACTGTCAGATGCTTT-TTCTAGACATTCTGacaactttatgagattggtaccaccatt-ttcccatttcatagacaa-----------agaCAGATTCCATGGTT-ACAGGAGACAGTCTGAAATGACTCACGGTCTGGTCTGGTATA--ACTTTTAGGACTCTGGGATTACTAagtcttggctttgccact-------tatgtgacctggaggaaagctcttaatatcttttcatccctatttt i mm10.chr1 C 0 C 0 s canFam3.chr7 36355743 880 + 80974532 -TTTGTTGTAAGTAACCTATTAATAACACCTGGTGTAATGCCTGTTAACACGCTTAGTGCCTGAAGC-AAATTGGCGGGTTCTCCTTCTACTTTTGCCAATAACTTGTCAAAAACTGATTTCGAGTTCCTTCCAAATTCTCAGAAGAACATTCAAGACAAGGTAGCTTATGTAGCCCTCAGACTTCGCCAGGGCAAGGGCTGGCTCCTGGCCAACTTGAG--AAGTCAT-GCCGAATTGGAGGAAGAACCCCAAGGAGTTGAGAAGGGGCCTCAGGATGGCAAGATGCCAAATG-----AGAATGCAATGAATTAATTGATTTGTAACTTACACAAGCTTCAGGGTGAGGATAAAGGTGAAATTCATTTCCTTCAACAGCTCCAGCTCCTT----------------------ATTTCTGGAGCTA---AAAATGCTGCCTCTATCTTATGACAACCAGAGAAG----------------------------------------------------------------------------------AATCTTTATTATTGAGCCCAGAATTTAGGATTCATTGAGCCACCTTGCTAA----------------------GGAACCAGAA-ACCAGAAAGGAAGGCAGGCAAGTCCAGTCCATTCAGAGGTATCC-CTAGAGGAAGGGCAAACCATCTTCCCCAGGGAGGCGAAGCAGTGAGAAGGAACAGGGCTCTGCCTAATAATTAAATCAGAGATGGAGTCCGTGCGACATGCCTTCTAAGGATGTTTAGGTGCTCTGTCTCGGACATCCTGGCAATCCT-TAGCATCAGTAC---TATCATCCCCATTTCACAGATAAAACAGTAAGTTAGAGGATGTCAGTAATATATACAAGGcagtcttatgtaa---gggttgacagaggggactctaagaccagcccaagagggt--ccataccttggcttcaccacttggtagctatgtgacctcgagaaaagtttttaactgttttgtgtttcaatatc i canFam3.chr7 C 0 I 115 a score=185522.000000 s hg38.chr1_KI270759v1_alt 195583 57 + 425601 cttatct-------------------------------------------------------------------------------gtagaataaggataatagtgttgcggatgtcacagagtcgtaatgagggt s panTro4.chr1 224948731 57 + 228333871 cttatct-------------------------------------------------------------------------------gtagaataaggataatagtgtggcggatgtcacagagtcgtaatgagggt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226306762 57 - 229942017 cttatct-------------------------------------------------------------------------------gtagaataaggataatagtgttgtggatgtcacagggttgtaatgagggt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140197038 57 - 143122389 cttatct-------------------------------------------------------------------------------gtagaataaggataatagcgttgtggatgtcacagagttgtaatgagggt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16911110 55 - 229590362 cttatct-------------------------------------------------------------------------------gtagactaaggataatagtgtcgtggatgtcaca--gttgtcatgagggt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223674352 55 - 227556264 cttatct-------------------------------------------------------------------------------gtagactaaggataatagtgtcgtggatgtcaca--gttgtcatgagggt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16724684 55 - 220367699 cttatct-------------------------------------------------------------------------------gtagacTAAGGATAATAGTGTCGTGGATGTCACA--GTTGTCATGAGGGT i papAnu2.chr1 C 0 I 318 s chlSab2.chr25 82523012 55 + 85787240 cttatct-------------------------------------------------------------------------------gtagactaaggataatagtgtcgtggatgtcaca--gttgtcacgagggt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14204404 57 - 49578535 attatct-------------------------------------------------------------------------------gtagaataaggataataatgttgtggatgtcacagagctgtaatgagggt i calJac3.chr19 C 0 C 0 s mm10.chr1 178791018 57 + 195471971 cttatct-------------------------------------------------------------------------------gtagaataaggaaaataccattatagacatcatgaagctgtaatgcagat i mm10.chr1 C 0 C 0 s canFam3.chr7 36356738 136 + 80974532 cttgtccctctgcctgtgtctctgcctctgtgtgtgtgtgtttctcatgaataaataaataaaatctttaaaaaaaatccagattggtagaataaggataataatgttatgtgcttcacagagttgtgatgagaat i canFam3.chr7 I 115 C 0 a score=16393.000000 s hg38.chr1_KI270759v1_alt 195640 5 + 425601 taaat s panTro4.chr1 224948788 5 + 228333871 taagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226306819 5 - 229942017 taaat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140197095 5 - 143122389 taaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16911165 5 - 229590362 taaat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223674407 5 - 227556264 taaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16725057 5 - 220367699 taaat i papAnu2.chr1 I 318 C 0 s chlSab2.chr25 82523067 5 + 85787240 taaat i chlSab2.chr25 C 0 I 306 s calJac3.chr19 14204461 5 - 49578535 taagt i calJac3.chr19 C 0 C 0 s mm10.chr1 178791075 5 + 195471971 gaagt i mm10.chr1 C 0 C 0 s canFam3.chr7 36356874 5 + 80974532 gcaat i canFam3.chr7 C 0 C 0 a score=36019.000000 s hg38.chr1_KI270759v1_alt 195645 9 + 425601 aagttgata s panTro4.chr1 224948793 9 + 228333871 aagttgata i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226306824 9 - 229942017 cggttgata i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140197100 9 - 143122389 aagttgata i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16911170 9 - 229590362 aagttgata i rheMac3.chr1 C 0 I 312 s macFas5.chr1 223674412 9 - 227556264 aagttgata i macFas5.chr1 C 0 I 312 s papAnu2.chr1 16725062 9 - 220367699 aagttgata i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82523378 9 + 85787240 aagttgata i chlSab2.chr25 I 306 C 0 s calJac3.chr19 14204466 9 - 49578535 gagttgata i calJac3.chr19 C 0 C 0 s mm10.chr1 178791080 9 + 195471971 aaatgggta i mm10.chr1 C 0 C 0 s canFam3.chr7 36356879 9 + 80974532 aaattgata i canFam3.chr7 C 0 C 0 a score=286355.000000 s hg38.chr1_KI270759v1_alt 195654 97 + 425601 tatagacagctccgagaacctggcctggcatatggtaaggactAGCTACTTATTTGTGGTGGTGATTTGTTTTTA-CTC-TGTGAGAGATTTGAACCCA s panTro4.chr1 224948802 97 + 228333871 tatagacagctccgagaacccggcctggcatatggtaaggactAGCTACTTATTTGTGGTGGTGATTTGTTTTTA-CTC-TGTGAGAGATCTGAACCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226306833 97 - 229942017 tatacacagctctgagaacctggcctggcatatggtaaggactAGCTACTCATTTGTGGTGGTGATTTGTTTTTA-CTC-TGTGAGAGATTTGAACCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140197109 97 - 143122389 tatagacagctccgagaacctggcctggcatatggtaaggactAGCTACTTATTTGTGGTGGTGATTTGTTTTTA-CTC-TGTGGGAAATTTGAACCCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16911491 85 - 229590362 tatagacagctccgagaacctggcctggcatatggtaaggactAGCTACTTA------------ACTTGTTTTTA-CTG-TGTGAGAGATTTGAACCCA i rheMac3.chr1 I 312 C 0 s macFas5.chr1 223674733 85 - 227556264 tatagacagctccgagaacctggcctggcatatggtaaggactAGCTACTTA------------ACTTGTTTTTA-CTG-TGTGAGAGATTTGAACCCA i macFas5.chr1 I 312 C 0 s papAnu2.chr1 16725071 85 - 220367699 TATAGACAGCTCCGAGAACCTGGCCTGGCATATGGTAAGGACTAGCTACTTA------------ACTTGTTTTTA-CTG-TGTGAGAGATTTGAACCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82523387 85 + 85787240 tatagacagctccgagaacctggcctggcatatggtaaggactAGCTACTTA------------ACTTGTTTTTA-CTG-TGTGAGAGATTTGAACCCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14204475 96 - 49578535 tatagacagtctcaggaacctggcctggcgtctggtaaggactATCTATGTATTTG-GGTGGTGGTTCGTTTTTA-CTC-TGCGAGAGATTTGAACTCA i calJac3.chr19 C 0 I 136 s mm10.chr1 178791089 96 + 195471971 tatatgcagcccttggcactgggccc-acatagcgtaagggctATTTATATT-CTGTGGTACTTATTTGTTCTCA-GTCAAGTAAGAGTTTTGAACCTA i mm10.chr1 C 0 C 0 s canFam3.chr7 36356888 81 + 80974532 catgtaaagcccttagaactt------gcacatggtaagcacggttcacaggt-----------gttcatttttaGCTG-TGCCAGAGGTTTGAACCTA i canFam3.chr7 C 0 C 0 a score=33099.000000 s hg38.chr1_KI270759v1_alt 195751 10 + 425601 GTTTAGTTTG s panTro4.chr1 224948899 10 + 228333871 GTTTAGTTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226306930 10 - 229942017 GTTTAGTTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140197206 10 - 143122389 GTTTAATTTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16911576 10 - 229590362 GTTTAGTTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223674818 10 - 227556264 GTTTAGTTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16725156 10 - 220367699 GTTTAATTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82523472 10 + 85787240 GTTTAGTTTG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178791185 10 + 195471971 GTTTAGCCTA i mm10.chr1 C 0 C 0 s canFam3.chr7 36356969 10 + 80974532 GGTTACTTTG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14204571 136 - 49578535 I a score=2587105.000000 s hg38.chr1_KI270759v1_alt 195761 687 + 425601 ATGCTAGGGTCAGAGTTCTTTGTCA--TCTGT----------------TCTTAAGAAGCCAGTGGAATAAA-TATCTTCTTTCTC-----CTACATTTACAAAGAGATGATAATCCTGCTTTAGAAGAGTTATCATGCCTGCAGAGGTATCATAGAGATTAGTTTTTATCCGCAGAGCACTTTTTAATTGGAGGATAATTGCTACACTGGACTAGTGTGGTAGTAGGAATTCATATCAAAATTAGACTTTGTGACTGAAAGTGTAAACAAATGCATTCTTGCTAAGACTAGCCACATATTTAGAGGCATATAGCAGTCTGAAATAATTCTATTCCTTTGTCAACACACAGACGGAGGACCGTTGGGC--CTTTTGCTAAATTTGGCTCTGCTGCACTTCCGTCTTTAGAACTAGGCAATTGCTTCATCATGCCTACATTGTGCTACCCTGATATTTTGGTACCTACTGCACTGCCGCACATTCATGGGACGCCAGCTGTACCATCTATATAATAATCT-GAGAACTTGGCCATTCA-----CCATCCAAAGTTTTCATACAAACCAATGAAGGCGGCGTGCACTTCAGATGAG-CAAACACCAGACCTGTAGTATAGGTGGACAGATAACTAGATTTTGCTTTTCTGATAAAAAAGGAATCTTGTCTGTTGTTTTAGAACTACTT----TATATGGACAGTGAGTGCAGCATGATT--------TCTTCCAA s panTro4.chr1 224948909 687 + 228333871 ATGCTAGGGTCAGAGTTCTTTGTCA--TCTGT----------------CCTTAAGAAGCCAGTGGAATAAA-TATCTTCTTTCTC-----CTACATTTACAAAGAGATGATAATCCTGCTTTAGAAGAGTTATCATGCCTGCAGAGGTATCATAGAGATTAGTTTTTATCCGCAGAGCACTTTTTAATTGGAGGATAATTGCTACACTGGACTAGTGTGGTAGTAGGAATTCATATCAAAATTAGACTTTGTGACCGAAAGTATAAACAAATGCATTTTTGCTAAGACTAGCCACATATTTAGAGGCATATAGCAGTCTGAAATAATTCTATTCCTTTGTCAACACACAGACGGAGGACTGTGGAGC--CTTTTGCTAAATTTGGCTCTGCTGCACTTCCGTCTTTAGAACTAGGCAATTGCTTCATCATGCCCACATTGTGCTACCCTGATATTTTGGTACCTACTGCGCTGCCGCACATTCATGGGACGCCAGCTGTACCATCTATATAATAATCT-GAGAACTTGGCCATTCA-----CCATCCAAAGTTTTCATACAAACCAATGAAGGCGGCGTGCACTTCAGATGAG-CAAACACCAGACCCGTAGTATAGGTGGACAGATAACTAGATTTTGCTTTTCTGATAAAAAAGGAATCTTGTCTGTTGTTTTAGAACTACTT----TATATGGACAGTGAGTGCAGCATGAGT--------TCTTCCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226306940 688 - 229942017 ATGCTAGGGTCAGAGTTCTTTGTCA--TCTGT----------------TCTTAAGAAGCCAGTGGAATAAA-TATCTTCTTTCTC-----CTACATTTACAAAGAGATGATAATCTTGCTTTAGAAGAGTTATCATGCCTGCAGAGGTATCATAGAGATTAGTTTTTATCTGCAGAGCACTTTTTAATTGGAGGATAATTGCTCCACTGGACTAGTGTGGTAGTAGGAATTCATATCAAAATTAGACTTTGTGACCGAAAGTATAAACAAATGCATTTTTGCTAAGACTAGCCATATATTTAGAGGCATATAGCAGTCTGAAATAATTCTATTCCTTTGTCAACACACAGACGGAGGATTGTTGAGC--CTTTTGCTAAATTTGGCTCTGCTGCACTTCCGTCTTTAGAACTAGGCAATTGCTTCATCATGCCCACATTGTGCTACCCTGATATTTTGGTACCTACTGCACTGCCGCACATTCCTGGGACGCCAGCTGTACCATCTATATAATAATCT-GAGAACTTGGCCATTCA-----CCATCCAAAGTTTTCATACAAACCAATGAAGGCGGCGTGCACTTCAGATGAGACAAACACCAGACCTGTAGTATAGGTGGACAGATAACTAGATCTTGCTTTTCTGATAAAAAAGGAATCTTGTCTGTTGTTTTAGAACTACTT----TATATGGACAGTGAGTGCAGCATGATT--------TCTTCCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140197216 683 - 143122389 ATGCTAGGGTCAGAGTTCTTTGTCA--TCTGT----------------TCTTAAGAAGCCAGTGGAGTAAA-TATCTTCTTTCTC-----CTACATTTACAAAGAAATGATAATCCTGCTTTAGAAGAGTT---ATGCCTGCAGAGGTATCATAGAGATTAGTTTTTATCTGCAGAGCACTTTTTAATTGGAGGATAATTGCTACACTGGACTAGTGTGGTGGTAGGAATTCATATCAAAATTAGACTTTGTGACCGAAAGTATAAACAAATGCATTTCTGCTAAGACTGGCCACATATTTAGAGGCAGATAGCAGTCTGAAATAATTCTATTCCTTTGTCAACACACAGACGGAGGATTGTTGAGC--CTTTTGCTACATTTGGCTCTGCTGCACTTCCGTCTTTAGAACTAGGCAATTGCTTCATCATGCCCACATTGTGCTACCCTGATATTTTGGTACCTACCACACTGCCGCACATTCATGGGACGCCAGCTGTA-CATCTATATAATAATCT-GAGAACTTGGCCATTCA-----CCATCTAAAGTTTTCATACAAACCAACGAAGGCGGCATGCACTTCAGATGAGACAAATACCAGACCCGTAGTATAGGTGCACAGATAACCAGATTTTGCTTTTCTGAT-AAAAAGGAAGCTTGTCTGTTGTTTTAGAACTACTT----CATATGGACAGTGAGTGCAGCGTGATT--------TCTTCCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16911586 687 - 229590362 ATGCTAGGGTCAGAGTTCTTTGTCA--TCTGT----------------TCTTAAGAAGCCAGTGGGATGAA-TGTCTTCTTTCTC-----TTACATTTACAAAGAGATGATAAGCCTGCTTTAGAAGAGGTATCACGCCTGCAGAGGTATCACAGAGATTAGTTTTTATCCGCAGAGCACTTTTTAAATGGAGGATAATTGCTACACTGGGCTAGTGTGGTAGTAAGAATTCATATCAGAATTAGACTTTGTGACCGAAAGTATAAACAAATGCATGTTTGCTAAGACTAGCCACATATTTAGAGGCATATAGCAGTCTGAAATAATTCTATTCCTTTATCAACACACAGACGGAGGATTGTTGAGC--CTTTTGCTAAATTTGGCTCTGCTGCACTTCCGTCTTTAGAACTAGGCAATTGCTTCATCATGCCCATATTGTGCTGGCCTGATATTTTGGTAACTACGGCACTGCCGCACATTGATGGAACACCAGCTGTA-CGTCTATAGAATACTCT-GAGAACTTGGCCGTTCA-----CCACCCAAAGTTTTCATACAAACCAACGAAGGCGGCACATACTTCAGATGAGACAGGCACCAGACCTGTAGTATAGGTGGACAGATAAGTAGATTTTGCTTTTCTGATAAAAAAGGAATCTTGTCTGTTGTTTTAGAACTACTT----GATATGGACGGTGAGTGCAGCACGATT--------TCTTCCAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223674828 687 - 227556264 ATGCTAGGGTCAGAGTTCTTTGTCA--TCTGT----------------TCTTAAGAAGCCAGTGGGATGAA-CGTCTTCTTTCTC-----TTACATTTACAAAGAGATGATAAGCCTGCTTTAGAAGAGGTATCACGCCTGCAGAGGTATCACAGAGATTAGTTTTTATCCGCAGAGCACTTTTTAAATGGAGGATAATTGCTACACTGGGCTAGTGTGGTAGTAAGAATTCATATCAGAATTAGACTTTGTGACCGAAAGTATAAACAAATGCATGTTTGCTAAGACTAGCCACATATTTAGAGGCATATAGCAGTCTGAAATAATTCTATTCCTTTATCAACACACAGACGGAGGATTGTTGAGC--CTTTTGCTAAATTTGGCTCTGCTGCACTTCCGTCTTTAGAACTAGGCAATTGCTTCATCATGCCCATATTGTGCTGGCCTGATATTTTGGTAACTACGGCACTGCCGCACATTGATGGAACACCAGCTGTA-CGTCTATAGAATACTCT-GAGAACTTGGCCGTTCA-----CCACCCAAAGTTTTCATACAAACCAACGAAGGCGGCACATACTTCAGATGAGACAGGCACCAGACCTGTAGTATAGGTGGACAGATAAGTAGATTTTGCTTTTCTGATAAAAAAGGAATCTTGTCTGTTGTTTTAGAACTACTT----GATATGGACGGTGAGTGCAGCACGATT--------TCTTCCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16725166 687 - 220367699 ATGCTAGGGTCAGAGTTCTTTGTCA--TCTGT----------------TCTTAAGAAGCCAGTGGGATGAA-CGTCTTCTTTCTC-----TTACATTTACAAAGAGATGATAAGCCTGCTTTAGAAGAGTTATCACGCCTGCAGAGGTATCACAGAGATTAGTTTTTATCCGCAGAGCACTTTTTAAATGGAGGATAATTGCTACACTGGGCTAGTGTGGTAGTAAGAATTCATATCAGAATTAGACTTTGTGACCGAAAGTATAAACAAATGCATGTTTGCTAAGACTAGCCACATATTTAGAGGCATATAGCAGTCTGAAATAATTCTATTCCTTTATCAACACACAGACGGAGGATTGTTGAGC--CTTTTGCTAAATTTGGCTCTGCTGCACTTCCGTCTTTAGAACTAGGCAATTGCTTCATCATGCCCGTATTGTGCTGGCCTGATATTTTGGTAACTACGGCACTGCCGCACATTGATGGAACACCAGCTGTA-CGTCTATAGAATACTCT-GAGAACTTGGCCGTTCA-----CCACCCAAAGTTTTCATACAAACCAACGAAGGCGGCACATACTTCAGATGAGACAGGCACCAGACCTGTAGTATAGGTGGACAGATAAGTAGATTTTGCTTTTCTGATAAAAAAGGAATCTTGTGTGTTGTTTTAGAACTACTT----GATATGGACGGTGAGTGCAGCACGATT--------TCTTCCAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82523482 687 + 85787240 ATGCTAGGGTCAGAGTTCTTTGTCA--TCTGT----------------TCTTAAGAAGCCAGTGGGATGAA-CGTCTTCTTTCTC-----TTACATTTACAAAGAGATGATAAGCCTGCTTTAGAAGAGTTATCACGCCTGCAGAGGTATCACAGAGATTAGTTTTTATCCGCAGAGCACTTTTTAAATGGAGGATAATTGCTACGCTGGGCTAGTGTGGTAGTAAGAATTCATATCAGAATTAGACTTTGTGACCGAAAGTATAAACAAATGCATGTTTGCTAAGACCAGCCACATATTTAGAGGCATATAGCAGTCTGAAATAATTCTATTCCTTTATCAACACATAGACGGAGGATTGTTGAGC--CTTTTGCTAAATTTGGCTCTGCTGCACTTCCGTCTTTAGAACTAGGCAATTGCTTCATCATGCCCATATTGTGCTGGCCTGATATTTTGGTAACTACGGCACTGCCGCACATTGATGGAACACCAGCTGTA-CGTCTATAGAATACTCT-GAGAACTTGGCTGTTCA-----CCACCCAAAGTTTTCATACAAACCAACGAAGGCGGCGTGTACTTCAGATGAGACAGACACCAGACCTGTAGTATAGGTGGACAGATAAGTAGATTTTGCTTTTCTGATAAAAAAGGAATCTTGTCTGTTGTTTTAGAACTACTT----GATATGGACGGTGAGTACAGCACGATT--------TCTTCCAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14204707 683 - 49578535 ATGCTGGGGTCAGAGTTCTTTGTCA--TATGT----------------TCTT-AGAAGCCCGTGGAATAAA-TGTCTTCTTTCTC-----TTACATTTAAAAAGAAATGATAATCCTGCTGTAGAAGAGGTATCATGCCCACAGAGGTATCAGAGAGATCAGTTTTTATCCACAGAGCACTTTTGAAATGGAGGGTAATTGCTGCACTGGGCTGGTGTGGTGGTAAGAATTC--ATCAGAATTAGACTTGGTGACCGAAAGTATAAACAAATGCATTTCTGCTAAGGCCAGCCACGTGTTCAGAGGCAGATAGCAGCCCGAAATAATTCCCTTCCTTTATCAACACACAGACGGAGGACTGTTGAGC--CTTTTGCTAAATTTGGCCCTGCTGCTCTTCTGTCTTTAGAATCAGGCAATTGCTTCATCATGCACACATTGTGCGGCCCTGGTATTTTGGTGACTTCGGCACTGCTGCGCATTCAGAGCATGCCAGCTGTA-CATCTGTACCGTTGTCT-GAGAGCTTGGCCATTGA-----CCATCCGGAGTGCTCATACAAACCAGCGAAGGCAGTGTGCCCTTCAGATGAGGCACACACCAGACTCGTAGTATAGGCGGACAGAGAAGTAGATTTTGCTTTTCCAGTAAAAAAGGAATCTCGTCTGTTGTTTTAGAACTACTC----GATACGGACAGTGAGTGCAGTGTGACT--------TCTTCC-C i calJac3.chr19 I 136 C 0 s mm10.chr1 178791195 672 + 195471971 ATGGT-GGGTCTGAGTTCCTTGTTAATACGAC----------------TCCCTCGAAGCAGTTGGGTTAAA-TTTGTTCCTGTTCTTTGATTACATGTAAGAGGAAATCAGAAGCCTGCTTTAGCAG---TATCAGGAGAGCTCAGGTGTCCTGGAAAT-ACTTTTGATCCACAGAGCATCTTTTCAATGAAGGATACTTGCTATTCAGGCC------AGTAGTGAGAATTCACATGAAAATGAGACTGTGTGAGCTGAAGGGTAAACAACTGCATTTTTGCTAAGACTAGTCACACATTTAGAGGCATTTGGCAGCCAGAAGTAAGTCTAGTCCTTTATCAACACACAGACAGAGGGTTGTTGAGC--CTTTTGCTAAATCTGGCTCTGAGACACTTCTGTCTTTAGGTCCAGGCAGTTGCTTCATTGTGCACCCA---TGCTGTCCTGATATTTTGGTACTGAGCACACTGCTGTACATTCACAGGACACCAGCTGCA-CGTGTGTATCATCCTCT--AGACAGGGGTCATGTG-----CCATATAAAGTTATCATATAAACCGACG--GATGGCATGCACTTTAGA-GAAACAAACACCAGAC---------AGGTGGGCAGACA---AGATTCTGCCTTTCTGATGAGATTGAACTTCCCCCTACAGTCTTAGCATTACAT----GACTGGAATGGTCAGTTTAGCACGATTTCATCACATCTTCCAA i mm10.chr1 C 0 C 0 s canFam3.chr7 36356979 680 + 80974532 ------AGGCTAGAGCTCTTTGTTG--CCTGTTGTGTCTTTATATAACTTTATAAAAGCAAGAGGAGTAAATTTTTTTCTTTCTC-----GTACCACGAAAAAGGGATGATAGTCCTGCTTTAGCA-------------TACAAAGGTATCATGGAGTTTCATTTTTATCTACAGAACACTTTTTAAATGCAGAATAATTGCTGTACTGGGC-----GGGTTGTTAGAATTCATACCAAAATTAGACTTTGTGACCTGAAGTTTAAACAATTGCATTTTTGCTAAGACTACCCA--TATTTAGAGGCATCGAGCAGTCCAAAATAATTCAATTCCTTTATCAACACACAGACGGAGGATTGTTGGGCCTCTTTTACTAAATTTGGCTCCACTACACTTCTGTCTTTAGAACTAGGCAATTGCTTCATTATGCATACATAGTGCTTCCCTCATATTTTGGTAACTACTGCTCTGTTGCACATTCACTGGATGCCAGCTGTA-CATCTATAAAATTCTTTTGAGAATTTGGCGCTTTGACTATCCATCCAAAGTTAGCGTATAAATCAACTAAGGTAGCTTGCACTTAAGATAAGATGAACTCCAAGCCTA----------GGATAGATAACTAGATCCTTCTTTCCTGATATGAAAGTCATCTTGCCTATTGTTTTATAACTACTGATAAAAAAAAAAAGGTCATTATAGTATGATT-------ACCGTCCA- i canFam3.chr7 C 0 I 220 a score=45681.000000 s hg38.chr1_KI270759v1_alt 196448 12 + 425601 CTGGAGATTTAA s panTro4.chr1 224949596 12 + 228333871 CTGGAGATTTAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226307628 12 - 229942017 CTGGAGATTTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140197899 12 - 143122389 CTGGAGATTTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16912273 12 - 229590362 CCGCAGATTTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223675515 12 - 227556264 CCGCAGATTTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16725853 12 - 220367699 CCCGAGATTTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82524169 12 + 85787240 CTGGAGATTTAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14205390 12 - 49578535 CTGGACATTTAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178791867 12 + 195471971 CTGGAGATTTAA i mm10.chr1 C 0 I 151 s canFam3.chr7 36357879 12 + 80974532 CTTAAGATTTAA i canFam3.chr7 I 220 C 0 a score=310800.000000 s hg38.chr1_KI270759v1_alt 196460 91 + 425601 TGGAGACCTGGATCAAACATTACATACTTTGTTACATCTTTTTGAGAATGAGTTGGAGTGAGGGGATGTTATGTTGAAAAAGAAGAGGCAg s panTro4.chr1 224949608 91 + 228333871 TGGAGGCCTGGATCAAACATTACATACTTTGTTACATCTTTTTGAGAATGAGTTGGAGTGAGGGGATGTTATGTTTAAAAAGAAGAGGCAg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226307640 91 - 229942017 TGAAGACCTGGATCAAACGTTACATACTTTGTTACATCTTTTTGAAAATGAGTTGGAGTGAGGGGATGTTATGTTTAAAAAGAAGAGGCAg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140197911 91 - 143122389 TGAAGACCTAGATCAAACATTACATACTTTGTTACATCTTTTTGAGAATGAGTTGGAGTGAGGGGATGTTATGTTTGAAAAGAAGAGGCAg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16912285 91 - 229590362 TGAAGACCTAGATACAACATTACATACTTTGTTACATCTTTTTGAGAATGAGTTGGAGTGAGGAGATGTTATGTTTAAAAAGAAGAGGCAg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223675527 91 - 227556264 TGAAGACCTAGATACAACATTACATACTTTGTTACATCTTTTTGAGAATGAGTTGGAGTGAGGAGATGTTATGTTTAAAAAGAAGAGGCAg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16725865 91 - 220367699 TGAAGACCTAGATACAACATTACATACTTTGTTACATCTTTTTGAGAATGAGTTGGAGTGAGGAGATgttatgtttaaaaagaagaggcag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82524181 91 + 85787240 TGAAGACCTAGATACAACATTACATACTTTGTTACATCTTTTTGAGAATGAGTTGGAGTAAGGAGATGTTACATTTAAAAAGAAGAGGCAg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14205402 91 - 49578535 GGAAGACCTAGATACAGCATTACACGCTTCGTTACATTTTTTTGAGAATGAGTTGGAGTGAGGGGGTGTTACGTTGAAAAAGAAGAGGCAg i calJac3.chr19 C 0 C 0 s canFam3.chr7 36357891 89 + 80974532 TGAAAA-CTACATAAAACA-TATATACTTTCTTAAATCTTTCTGAGAACAAGGTGGAATGAGAGGAGATTATTTTTGGAAGGAAGCAGCAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178791879 151 + 195471971 I a score=757257.000000 s hg38.chr1_KI270759v1_alt 196551 319 + 425601 gctgggaagggtggctcacacctgtaatcccagcactttgggaggccgaggtgggcagatcatgaggtcaagagtttgagaccagcctaaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtattggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggagggg------------------------------gaggttgcagtgagccgagatcctgccactgcactccaacct------------------------------------------ggcaacagagcgagcaagattctgtctc-----aa--------------aaaaaaaaaaaaaaaaaaagaagaagaaGAGGCAA s panTro4.chr1 224949699 324 + 228333871 gctgggaagggtggctcacacctgtaatcccagcactttgggaggtcgaggtgggcggatcatgaggtcaagagttcgagaccagcctaaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtattggcgcacgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggagggg------------------------------gaggttgcagtgagccgagatcctgccactgcacttcagcct------------------------------------------ggcaacagagtgagcaagattctgtctccaaaaaa--------------aaaaaaaaaaaaaaaagaagaaGAAGAAGAGGCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226307731 324 - 229942017 gctgggaagggtggctcacacctgtaatcccagcactttgggaggccgaggtgggcggatcatgaggtcaagagttcgagaccagcctaaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtattggcgcacgcctgtaatcccagctactcggaaggctgaggcaggagaattgcttgaacccaggagggg------------------------------gaggttgcagtgagccgagatcgtgccactgcacttcaacct------------------------------------------ggcaacaaagcgagcaagattctgtctcaaaaaaa--------------aaaaaaaaaaaaaaaagaaTAAGAAGAAGAAGCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140198002 310 - 143122389 gctgggaagggtggctcacgcctgtaatcctagcactctgggaggctgaggcaggtggatcatgaggtcaagagttcaagaccagcctaaccaacatggtgaaatcccgactctactaaaaatacaaaaattagccgggtgtattggcccacgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggtg------------------------------gaggttgcagtgagccaagatcgtgccactgcacttcaacct------------------------------------------ggcaacagagtaagcaagattctgtctc----------------------------caaaaaaaaaaaaaagaagaaGAGGCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16912376 319 - 229590362 gctgggcagggtggctcatggctgtaatcccagcactttgggaggcctaggtgggtggatcatgaggtcaggagttcaagaccagcctaaccaacatggtgaaaccctatctctactaaaaatagaaaaattagccggctgtagtggcgcacgcctataatcccagaaactcgggaggctgaggcaggagaattgcttgaacccaggaggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------------------------------------------aaaaaaaaaaaaaaaagaagaaGAGGAAGAGGCAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223675618 338 - 227556264 gctgggcagggtggctcatggctgtaatcccagcactttgggaggccgaggtgggtggatcatgaggtcaggagttcaagaccagcctaaccaacatggtgaaaccctatctctactaaaaatagaaaaattagccggctgtagtggcgcacgcctataatcccagaaactcgggaggctgaggcaggagaattgcttgaacccaggaggtg------------------------------gaggttgcagtgagctgagatcgtgccactgcacttcagcct------------------------------------------ggcaacagagagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaagaagaagaagaagaaGAGGAAGAGGCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16725956 337 - 220367699 gctgggcagggtggttcatggctgtaatcccagcactttgggaggccgaggtgggtggatcatgaggtcaagagttcaagaccagcctaaccaacatggtgaaaccctatttttactaaaaatagaaaaattagccggctgtagtggcgcacgcctataatcccagcaactcgggaggctgaggcaggagaattgcttgaacccaggaggtg------------------------------gaggttgcagtgagctgagatcgtgccactgcacttcagcct------------------------------------------ggcaacagagagagcaagactccgtctcaaaaaaaaaaaaaaaaaaaa-aaaaaaagaagaagaagaagaagaggaagaggcaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82524272 316 + 85787240 gctgggcagggtggctcatggctgtaatcccagcactttgggaggccgaggtgggtggatcatgaggtcaggagttcaagaccagcctaaccaacatggtgagaccccatctctactaaaaatagaaaaattagccagctgtagtggcacacgcctgtaatcccagcaactcgggaggctgaggcaggagaatcgcttgaacccaggaggtg------------------------------gaggtcgcagtgagctgagatcgtgccactgcacttcagcct------------------------------------------ggcaacagagagagctagactccatct----------------------acaaaaagaggaagaagaagaaGAGGAAGAGGCAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14205493 268 - 49578535 accgggcgcggtggctcacatctgtaatcccagcactttgggaggtcgaggcgagtggatcacggggtcaagagatcgaggccagcctggccaacgtggtgaaatcccatctctactaaaaataccaaaactggctggacatggtggcgtgcgcctgttatcccagctactcgggaggctgaggcaagagaatcacttgaacctgggaggca------------------------------gaggttgcagtgagctgagatggcaccactgcacttgagcct------------------------------------------gggggcagtgtgag---------------------------------------------------------------------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178791879 151 + 195471971 I e canFam3.chr7 36357980 0 + 80974532 C a score=900455.000000 s hg38.chr1_KI270759v1_alt 196870 297 + 425601 CACTTGTCTTGGCAAACCATGACTAGTTTAGACTGCAAGCTCAATGAAGATCAAAACTAGGTTGGTCTTGTTTTGTTTCAGGCACTCTCTGTATGTATTTGT--------------------------TGAATGAATGAATGAAAATAATAGTTATGATTATA-ATATTATCTAAGTATGAAGAACATGCCTCTGGATCAGTAAAGACACATAAAATGGTAGG----AGGGTTAAAGAAC---------ATCAGTGGGTACCAACTGTTTTGTCATGA-------CAGGGGGATATCTCTGAAAAATT-TCTGTATTAATTGGAAAAGAAGCTTATGGTGAAC----tt s panTro4.chr1 224950023 305 + 228333871 CACTTGTCTTGGCAAACCATGACTAGTTTAGACTGCAAGCTCAATGAAGATCAAAACTAGGTTGGTCTTGTTTTGTTTCAGGCACTCTCTGTATGTATTTGT--------------------------TGAATGAATGAATGAAAATAATAGTTATGATTATAGACATTATCTAAGTATGAAGAACATGCCTCTGGATAAGTAAAGACACATAAAATGGTAGG----AGGGTTAAAGAACATCAGTGGGATCAGTGGGTACCAACTGTTTTGTCATGA-------CAGGGGGATAGCTCTGAAAAATT-TCTGTATTAATTGGAAAAGAAGCTTATGGTGAAC------ i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226308055 296 - 229942017 CAATTGTCTTGGCAAACCATGACTAGTTTAGACTGCAACCTCAATGAAGATCAAAACTAGGCTGGTCTTGTTTTGTTTCAGGCACTCTCTGTATGTATTTGT--------------------------TGAATGAATGAATGAAAATAATAGTTATGATTATAGATATTATCTAAGTATGAAGAACATGCCTCTGGATAAGTAAAGACACATAAAATAGTAGG----AGGGTTAAAGAAC---------ATCAGTGGGTACCAACTGTTTTGTCATGA-------GAGGGGGATATCTCTGAAAAATT-TCTGTATTAATTGGAAAAGAAGCTTATGGTGAAC------ i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140198312 300 - 143122389 CAGTTATCTTGGCAAACCATGACTAGTTTAGACTGCAAGCTCAATGAAGATCAAAACTGGGTTGGTCTTGTTTTGTTTCAGGCACTCTCTGTATGTATTTGT--------------------------CGAATGAATGAATGAAAATAATAGTTATGATTATAGATATTATCTAAGTATGAAGAAAATGCCTTGGAATGAGTAAAGACACATAAAATGGTAGG----AGGGTTAAAGAAC---------ATCAGTGGGTACCCACTGTTTTGTCATGA-------CAGGGGGATATCTCTGAAAAATT-TCTGTATTAATTGGAAAAGAAGCTTATGGCGAAC--tttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16912695 295 - 229590362 CAATTATCTTGGCAAACCATGACTAGTTTAGACTATAAGCTCAGTGAAGATCAAAACTAGGTTGTTC-----TTGTTTCAGGCACTCTCTGTATGTTTTTGT--------------------------TGAATGAATGAATGAAAATAATAGTTATGATTATAGATATTCTCTAAGTATGAAGAAAATGACTCTGGATAAGTAAAGGCACATAAAATGGTAGG----AGGGTTAAAGAGC---------ATCCGTGGGTACCAACTGCTTTGTCATGA-------GACGGGGCTATCTCTGAAAACTT-TCTGTATTAATTGGAAAAGAAGCTTATGG-GAAC-ttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223675956 296 - 227556264 CAATTATCTTGGCAAACCATGACTAGTTTAGACTATAAGCTCAGTGAAGATCAAAACTAGGTTGTTC-----TTGTTTCAGGCACTCTCTGTATGTTTTTGT--------------------------TGAATGAATGAATGAAAATAATAGTTATGATTATAGATATTCTCTAAGTATGAAGAAAATGACTCTGGATAAGTAAAGGCACATAAAATGGTAGG----AGGGTTAAAGAGC---------ATCCGTGGGTACCAACTGTTTTGTCATGA-------GACGGGGCTATCTCTGAAAACTT-TCTGTATTAATTGGAAAAGAAGCTTATGG-GAACtttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16726293 290 - 220367699 cAATTATCTTGGCAAACCATGACTAATTTAGACTATAAGCTCAGTGAAGATCAAAACTAGGTTGTTC-----TTGTTTCAGGCACTCTCTGTatgtttttgt------------------------------tgaatgaatgaaaataatagttATGATTATAGATATTCTCTAAGTATGAAGAAAATGACTCTGGATAAGTAAAGGCACATAAAATGGTAGG----AGGGTTAAAGAGC---------ATCCGTGGGTACCAACTGTTTTGTCATGA-------GAGGGGGCTATCTCTGAAAAATT-TCTATATTAATTGGAAAAGAAGCTtatgg-gaac--tttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82524588 292 + 85787240 CAATTATCTTGGCAAACCATGACTAGTTTAGACTACAAGCTCAGTGAAGATCAAAACTAGGTTGTTC-----TTGTTTCAGGCACTCTCTGTATGTTTTTGT--------------------------TGAATGAATGAATGAAAATAATAGTTATGATTATAGATATTCTCTAAGTATGAAGAAAATGACTCTGGATAAGTAAAGGCACATAAAATGGTAGG----AGGGTTAAAGAGC---------ATCCGTGGGTACCAACTGTTTTGTCATGA-------GAGGGGGTTATCTCTGAAAAATT-TCTGTATTAATTGGAAAAGAAGCTTATGG-GAAC----Ct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14205761 282 - 49578535 ---TTATCTTGGAAAACCATGACTAGTTTAGACTGCAAGCTCAATGAAGATCAAAACTAGGTTGGTC-----TCGTTTCAGGCACTCTCTATATTTGTtgaa--------------------------tgaatgaatgaatgaaAATAATAGATACAATTATGGATATTATCTAATTATGAAGAAAATACCTCTGGATAAGGAAAGAGACATAAAATGGTAGG-----GGAATAAAGAAC---------ATCAGTGGGTACCCACT--CTTGTCGTGA-------GAGGGGG--ATCTCTGAAAAAT----TATATCAATTGGAAAAAAAGCTTATGGTGAAC----TT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36357980 329 + 80974532 CAATTATTCTGGAAAACCGTGACTAGTTTACACTGCAGGTTCAGTGAAGATCAAAACTAGGTTTGTC-----TTGCTCTGGGCACTCTATACACACTTGTTTGATGATCAATtgaatgaatgaatgaatgaatgaatgaatgaGAGTAATGGTCATAATTATAGACATAGTTTGGATATGAAGAAAATGCCTCCGGATGAAGAAAGAGAAGTCAAGTCAGAGGGCAAAGAACCCAAGGAC---------ATGAGCAGTTGCCAGAT--TCTTCCATGAGTAAGTGGGATGGGCTCTCCTTGAAAACTTACCTATACTAACTGGGAAAGAGCCTTATGGTGAAC----TC i canFam3.chr7 C 0 C 0 e mm10.chr1 178791879 151 + 195471971 I a score=17707.000000 s hg38.chr1_KI270759v1_alt 197167 7 + 425601 ttttttt- s panTro4.chr1 224950328 7 + 228333871 ttttttt- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226308351 6 - 229942017 -tttttt- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140198612 7 - 143122389 ttttttt- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16912990 7 - 229590362 ttttttt- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223676252 7 - 227556264 ttttttt- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16726583 7 - 220367699 ttttttt- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82524880 7 + 85787240 ttttttt- i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36358309 7 + 80974532 -TTTTTTG i canFam3.chr7 C 0 I 174 e mm10.chr1 178791879 151 + 195471971 I e calJac3.chr19 14206043 0 - 49578535 C a score=249726.000000 s hg38.chr1_KI270759v1_alt 197174 113 + 425601 tttttttcgagatggagtttcgctcttgttgcccaggctggagtgcaatggcgcgatctcagctcatcgcaatctctgcctctcgggttcaagtgattctccttcctcagcct s panTro4.chr1 224950335 113 + 228333871 tttttttcgagatggagtttcgctcttgttgcccaggctggcgtgcaatggcgcgatctcagctcatcgcaatctctgcctcccgggttcaagtgattctccttcctcagcct i panTro4.chr1 C 0 M 69 s ponAbe2.chr1 226308357 113 - 229942017 ttttttttgagatggagttttgctcttgttgcccaggctggagtgcaatggcgcgatctcagctcatcgcaatctccgcctcccgggttcaagtgattccccttcctcagcct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140198619 111 - 143122389 ctttttttgagttggagtttcgctcttgttgcccaggctggagtgcaatggcgcgatcttggctca-cgcaatctccg-ctcccgggttcaagtgattctccttcctcagcct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16912997 113 - 229590362 ttctttttgagacggagtttcactcttgtcacccagactagagtgcagtggcacgatctcggctcactgcaacctctgcctcccggattcaagcgattctcctgcctcagcct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223676259 113 - 227556264 ttctttttgagacggagtttcactcttgtcacccagactagagtgcagtggcacgatctcggctcactgcaacctctgcctcccggattcaagcgattctcctgcctcagcct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16726590 113 - 220367699 ttctttttgagacggagtttcactcttgtcacccagactagagtgcagtggcacgatctcggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82524887 113 + 85787240 ttttttttgagatggagtttcactcttgtcacccagactagagtgcagtggcacgatcttggctcactgcaacctccgcctcccggattcaagcgattctcctgcctcagtct i chlSab2.chr25 C 0 C 0 e mm10.chr1 178791879 151 + 195471971 I e canFam3.chr7 36358316 174 + 80974532 I e calJac3.chr19 14206043 0 - 49578535 C a score=220847.000000 s hg38.chr1_KI270759v1_alt 197287 120 + 425601 cccgagtagctgggattacagacatgcgccaccaccccggctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtcttgaactcccgacctcaggtgatctg s ponAbe2.chr1 226308470 120 - 229942017 cccgagtagctgggattacaggcatgcgccactaccccggctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtcttgaactcctgacctcaggtgatctg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140198730 119 - 143122389 -ccgagtagctgggattacaggcatgcaccaccaccccggctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtcttgaactcccgacctcaggtgatctg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16913110 119 - 229590362 cccgagtagctgggattacaggcac-tgccaccaccccggctaattttgtatttttagtagagacggagtttctccatgttgatcaggctggtcttgaactcctgacctcaggtgatctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223676372 119 - 227556264 cctgagtagctgggattacaggcgc-tgccaccaccccggctaattttgtatttttagtagagacggagtttctccatgttgatcaggctggtcttgaactcctgacctcaggtgatctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16726703 119 - 220367699 cccgagtagctgggattacaggcgc-tgccaccaccccggctaattttgtatttttagtagagacggagtttctccatgttgatcaggctggtcttgaactcctgacctcaggtgatctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82525000 119 + 85787240 cccgagtagctgggattacaggcac-tgccaccaccccagctaattttgtatttttagtagagacggagtttctccatgttgatcaggctggtcttgaactcctgacctcaggtgatctg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178791879 151 + 195471971 I e canFam3.chr7 36358316 174 + 80974532 I e calJac3.chr19 14206043 0 - 49578535 C e panTro4.chr1 224950448 69 + 228333871 M a score=30293.000000 s hg38.chr1_KI270759v1_alt 197407 14 + 425601 cccgcctcggcctc s ponAbe2.chr1 226308590 14 - 229942017 tctgcctcggcctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140198849 14 - 143122389 cccacctcggcctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16913229 14 - 229590362 cctgcctcggcctc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223676491 14 - 227556264 cctgcctcggcctc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16726822 14 - 220367699 cctgcctcggcctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82525119 14 + 85787240 cccgcctcggcctc i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36358490 14 + 80974532 tctgccccttcctc i canFam3.chr7 I 174 C 0 e mm10.chr1 178791879 151 + 195471971 I e calJac3.chr19 14206043 0 - 49578535 C e panTro4.chr1 224950448 69 + 228333871 M a score=89470.000000 s hg38.chr1_KI270759v1_alt 197421 41 + 425601 ccaaagtgctgggattaca-gcgtgagccaccgcacccggcc s panTro4.chr1 224950517 41 + 228333871 ccaaagtgctgggattaca-gcgtgagccactgcacccggcc i panTro4.chr1 M 69 C 0 s ponAbe2.chr1 226308604 41 - 229942017 ccaaagtgctgggattaca-gcgtgagccaccgcacccagcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140198863 41 - 143122389 ccaaagtgctgggattaca-gcgtgagccaccgcacccggcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16913243 42 - 229590362 ccaaagtgttgggattacaagcatgagccaccgcgcccggcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223676505 42 - 227556264 ccaaagtgttgggattacaagcatgagccaccgcgcccggcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16726836 42 - 220367699 ccaaagtgttgggattacaggcatgagccaccgcgcccggcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82525133 42 + 85787240 tcaaagtgttgggattacaggcatgagccaccgcgcccggcc i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36358504 15 + 80974532 ---------------------------tccttgtgctcaccc i canFam3.chr7 C 0 C 0 e mm10.chr1 178791879 151 + 195471971 I e calJac3.chr19 14206043 0 - 49578535 C a score=11271.000000 s hg38.chr1_KI270759v1_alt 197462 11 + 425601 ATGGTGAACTC s panTro4.chr1 224950558 11 + 228333871 ATGGTGAACTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226308645 11 - 229942017 ATGGTGAACTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140198904 11 - 143122389 ATGGTGAACTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16913285 9 - 229590362 ATGGTGAAC-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223676547 9 - 227556264 ATGGTGAAC-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16726878 9 - 220367699 atggtgAAC-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82525175 9 + 85787240 ATGGTGAAC-- i chlSab2.chr25 C 0 C 0 s mm10.chr1 178792030 11 + 195471971 ATGGAATATTT i mm10.chr1 I 151 C 0 s canFam3.chr7 36358519 7 + 80974532 -ttgtctc--- i canFam3.chr7 C 0 C 0 e calJac3.chr19 14206043 0 - 49578535 C a score=2569824.000000 s hg38.chr1_KI270759v1_alt 197473 706 + 425601 -TTTTTAAATGACACATAAAATTTCCTGATTTGTCTTTTAAAAGTTACATCTAGATTTTCATGTATCA-TTTTTCTTATAAGGATAGCTAATTAATATATAGATTTTATGTATGGATTTTCATATTTCATGTATATAACATGAATTAAAC-TGTTAT--TTGTATGAAGTGCCAAG---------CTCCTTTTGGGTAGTACCTAC---------CACCCTGTATATACCACATGCCAAATGAGTTTTTAAGATATTGGCATGTCCCAAATTCACCATTTACATTCTTGAAAGTACTTCCTTTGTTCCATACAGATCTAACTAAATATTAGAGGTATCTGACCTTTTA---TTTTTTGAAA--AAATGTTTGATGTTCTGACTATTTGCAACAAAAGAGCTCTGTTCTCAAATGCCCTGTATGGAGAGAATTTCTCGGTTCTTTTGAGAGGGATAAAAAACCTCTCTTAAGTCTGTGAGACTAAAGATAAAGGGCATCCCAGCACCATGTATCTGAGGGATAATGACTGTCCGTATCGGAGAGCTGGGCGGTGATGGGTGTGTTGGAAGCACCGGCTGGACCAATGGACTTGGAGCTAGAACTTGG---TTTTGCTCTCGGCGTTGCCGCAGGGTGGCTGTCTTGCCTTATGCAGGT------TTTGATTCTCTTCTGTAAGGATCTGGTAGCTATTCCAAAGCCAACCCATCTGTGCTATGGGATTTGATGCCACATG-----------------------------ACTC s panTro4.chr1 224950569 697 + 228333871 -TTTTTAAATGACACATAAAATTTCCTGATTTGTCTTTTAAAAGTTACATCTAGATTTTCATGTATCA-TCTTTCTCATAAGGATAGCTAATTAATATATAGATTTTATGTATGGATTTTCATATTTCATGTATATAACATGAATTAAAC-TGTTAT--TTGTATGAAGTGCCAAG---------CTCCTTTTGGGTAGTACCTAC---------CACCCTGTATATACCTCATGCCAAATGAGTTTTTAAGATATTGGCATGTCCCAAATTCACCATTTACATTCTTGAAAGTACTTCCTTTGTTCCATACAGATCTAACTAAATATTAGAGGTATCTGACCTTTTA---TTTTTTGAAA--AAATGTTTGATGTTCTGACTATTTGCAACAAAAGACCTCTGTTCTCAAATGCCCTGTATGGAGAGAATTTCTCGGTTCTTTTGAGAGGGATAAAAACCCTCTCTTAAGTCTGTGAGACTAAAGATAAAGGGCATCCCAGCACCATGTATCTGAGGGATAATGACTGTCGGTATCGGAGAGCTGGGCGGTGATGGGTGTGTTGGAAGCACCGGCTGGACCAATGGACTTGGAGCTAGAACTTGG---TTTTGCTCTCGGCGTTGCCGCAGGGTGGCTGTCTTGCCTTATGCAGGT------TTTGAGTCTCTTCTGTAACGATCTGGTAGCTATTC---------CCCATCTGTGCTATGGGATTTGACGCCACATG-----------------------------ACTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226308656 705 - 229942017 -TTTTTAAATGACACATAAAATTTCCTGATTTGTCTTTTAAAAGTTACATCTAGATTTTCATGTATCA-TTTTTCTCATAAGGATAGCTAATTAATATATAGATTTTATGTATAGATTTTCATATTTCATGTATATAACATGAATTAAAC-TGTTAT--TTGTATGAAGTGCCAAG---------CTCCTTTTGGGTAGTACCTAC---------CACCCTGTACATACCTCATGCCAAATGAGTTTTTAAGATATTGACATGTCCCAAATTCACCATTTACATTCTTGAAAGTACTTCCTTTGTTCCATACAGATCTAACTAAATATTACAGGTATTTGACCTTTTA---TTTTTTGAAA--AAATGTTTGATGTTCTGACTATTTGCAACAAAAGAGCTCTGTTCTCAAATGCCCTGTATGGAGAGAATTTCTCGGTTCTTTTGAGAGGGATAAAAACCCTCTCTTAAGTCTGTGAGACTAAAGGTAAAGGGCATCCCAGCACCATGTATCTGAGGGATAATGACTGTCCATATCAGAGAGCTGGGCGGTGATGGGTGTGTTGGAAGCACCGGCTGGACCAATGGACTTGGAGCTAGAACTTGG---TTTTGTTCTCGGCGTTGCCGCAGGGTGGCTGTCTTGCCTTATGCAGG-------TTTGAGTCTCTTCTGTAAGGATCTGGTAGCTATTCTAAAGCCAACCCATCTGTGCTATGGGATTTGATGCCACATG-----------------------------GCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140198915 711 - 143122389 -TTTTTAAATGACACATAAAATTTCCTGATTTGTCTTTTAAAAGTTACATCTAGATTTTCATGTATCA-TTTTTCTCATAAGGACAGCTAATTAATATATAGATTTTATGTATAGATTTTCATATTTCATGTATATAACATGAATTAAAC-TGATAT--TTATATGAAGTGCCAAG---------CTCCTTTTGGGTAGTACCTAC---------CACCCTGTGTATACCTCATGCCAAATGAGTTTTTAAGATATTGGCATGTCCCAAATTCACCATTTACATGCTTGAAAGTACTTCCTTTGTTCCATACAGATCTAACTAAATATTAGAGGTATTTGATCTTTTA---TTTTTTGAAA--AAATGTTTGATGTTCTGACTATTTGCAACAAAAGAGCTCTGTTCTCAAATGCCCTGTATGGAGAGAATTTCTTGG-TCCTTTGAGAGGGATAAAAACCCTCTCTTAAGTCTGTGAGACTAAAGATCAAGGGTATCCCAGCACCATGTATCTGAGGGATAATGACTGTCCGTATCGGAGAGCTGGGCGGTGATGGGTGTGTTGGAAGCACCGGCTGGACCAGTGGACTTGGAGCTAGAAATTGG---TTTTGCTCTCGGTGTTGCCGCAGGGTGGCTGTCTTGCCTTATGCGGGTTTTCAGTCTCAGTCTCTTCTGTAAGGATCTGGTAGCTATTCCAAGGCCAACCCATCTGTGCTATGGGATTTCATGCCACGTG-----------------------------ACTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16913294 708 - 229590362 --TTTTAAATGACACATAACATTTCCTGATTTGTCTTTTAAAAGTTACATCTAGATTTTCATGTATCA-TTTTTCTCATAAGGATAGCTAATTAATATATAGATTTTAGGTATAGATTTTCACATTTCATGTACATAACATGAATTAAA----TGAT--TTACATGAAGTGCCAAG---------CTTCTTTTGGGTAGTGCCTAC---------CACCCTGTATATACCTCATGCCAAATGAGTTTTTAAGATATTAGCATGTCCCACATGCACCATTTACATTCTTGAAAGTACTTCCTTTGTTCCATGCAGATCTAACTAAATTTTAAAGGTATTTGACCTTTTA---TTTTTTGAAA--AAATGTTTGATGTTCTGACTATTTGCAACAAAAGAGCTCTGTTCTCAAATGTCCTGTATGGAGAGAATTTCTCGGTTCTTTTGAGAGGGATAAAAACCCTCTCTTAAGTCTATGAGACTAAAGATCAAGGGCATCCCAGCACCACGTATCTGAAGGATAATGACTGTCCGTATGGGAGAGCTGGGTGGTGATGGGCGTGTTGGAAGCACCGGCTGGACCcatggacttggagctagaacttgg---ttttgctctcggcgttgccgtagggtggctgtctggccttatgcaagttttgagtttcagtctcttctgtaaGGATCTGGTGGCTTTTCCAAAGCCAACCCATCTGTGCTATGGGATTTGATGCCACATG-----------------------------ACTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223676556 708 - 227556264 --TTTTAAATGACACATAACATTTCCTGATTTGTCTTTTAAAAGTTACATCTAGATTTTCATGTATCA-TTTTTCTCATAAGGATAGCTAATTAATATATAGATTTTAGGTATAGATTTTCACATTTCATGTACATAACATGAATTAAA----TGAT--TTACATGAAGTGCCAAG---------CTTCTTTTGGGTAGTGCCTAC---------CACCCTGTATATACCTCATGCCAAATGAGTTTTTAAGATATTAGCATGTCCCACATGCACCATTTACATTCTTGAAAGTACTTCCTTTGTTCCATGAAGATCTAACTAAATTTTAAAGGTATTTGACCTTTTA---TTTTTTGAAA--AAATGTTTGATGTTCTGACTATTTGCAACAAAAGAGCTCTGTTCTCAAATGTCCTGTATGGAGAGAATTTCTCGGTTCTTTTGAGAGGGATAAAAACCCTCTCTTAAGTCTATGAGACTAAAGATCAAGGGCATCCCAGCACCACGTATCTGAAGGATAATGACTGTCCGTATGGGAGAGCTGGGTGGTGATGGGCGTGTTGGAAGCACCGGCTGGACCcatggacttggagctagaacttgg---ttttgctctcggcgttgccgcagggtggctgtctggccttatgcaagttTTGAGTTTCAGTCTCTTCTGTAAGGATCTGGTGGCTTTTCCAAAGCCAACCCATCTGTGCTATGGGATTTGATGCCACATG-----------------------------ACTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16726887 708 - 220367699 --TTTTAAATGACACATAACATTTCCTGATTCGTCTTTTAAAAGTTACATCTAGATTTTCATGTATCA-TTTTTCTCATAAGGATAACTAATTAATATATAGATTTTAGgtatatattttcacatttcataTACATAACATGAATTAAA----TGAT--TTACATGAAGTGCCAAG---------CTTCTTTTGGGTAGTGCCTAC---------CACCCTGTATATACCTCATGCCAAATGAGTTTTTAAGATATTAGCATGTCCCACATTCACCATTTACATTCTTGAAAGTACTTCCTTTGTTCCATGCAGATCTAACTAAATTTTAAAGGTATttgacctttta---ttttttgaaa--aaatgtttgatGTTCTGACTATTTGCAACAAAAGAGCTCTGTTCTCAAATGTCCTGTATGGAGAGAATTTCTTGGTTCTTTTGAGAGGGATAAAAACCCTCTCTTAAGTCTATGAGACTAAAGATCAAGGGCATCCCAGCACCACGTATCTGAAGGATAATGACTGTCCGTATGGGAGAGCTGGGTGGTGATGGGCGTGTTGGAAGCACCGGCTGGACCCATGGACTTGGAGCTAGAACTTGG---TTTTGCTCTCGGCGTTGCCGCAGGGTGGCTGTCTGGCCTTATGCAAGTTTTGAGTTTCAGTCTCTTCTGTAAGGATCTGGTGGCTTTTCCAAAGCCAACCCATCTGGGCTATGGGATTTGATGCCACATG-----------------------------ACTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82525184 703 + 85787240 --TTTTAAATGACACATAACATTTCCTGATTTGTCTTTTAAAAGTTACATCTAGATTTTCATGTATCA-TTTTTCTCATAAGGATAGCTAATTAATATATAGATTTTATGTATAGATTTTCACATTTCATGTATATAACATGAATTAAA----TGAT--TTACATGAAGTGCCAAG---------CTCCTTTTGGGTAGTGCCTGC---------CACCCTGTATATACCTCATGCCAAATGAGTTTTTAAGATATTAGCATGTCCCACATTCACCATTTATATTCTTGAAAGTACTTTCTTTGTTCCATGCAGATCTAACTAAATTTTAAAGGTATTTGACCTTTTA---TTTTTTGAAA--AAATGTTTGATGTTCTGACTATTTGCAACAAAAGAGCTCTGTTCTCAAATGTCCTATATGGAGAGAATTTCTCGGTTCTTTTGAGAGGGATAAAAACCCTCTCTTAAGTCTATGAGACTAAAGATCAAGGGCATCCCAGCACCACGTATCTGAAGGATAATGACTGTCCGTATGGGAGAGCTGGGTGGTGATGGGCGTGTTGGAAGCACTGGCTGGACCcatggacttggagctagaacttag---ttttgctctcggcgttgccgcagggtggctgtctggccttatgcaagttttgagtctcagtctcttctgtaaGGATCTGGTGGCTTTTCCAAAGCCAACCCAT-----CTATGGGATTTGATGCCACATG-----------------------------ACTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14206043 712 - 49578535 -TTTAAAAATCACACATACAAGTTCCTAATTTGTCTTTTAAAAGTTACATCTAGATTTTCATGTATCA-TTTTTCTCATAAGGATAGCTAGTTAATATGTAGATTTCATGTATAGATTTCCATAGTTCATGTATATAATATGAATTCAAC-TGATAA--TTATATGACACGCCAAG---------CTCCTTTTGGGTGGTACCTAC---------CACTGTGTATATTCCTTGTGCCAAAGGAGTTTTTAAGATGTTGGCATGTCCCAAATTCACCATCTACATCCTTGAAAGTACTTCCTTTGTTCCAGACAGATCTAACTCAATATTATAGGTATTTCCCCTTTTA---TTTTTTGAAA--AAATGTTTGATGTTCTGACTATTTGCAACGAAAGAGCTCTGTTCTCAAATGCCCTGTATGGAGAGAATTTCTCAGTTCTTTTGAGAGGGATAAAAACTCTCTCTTAAGTCTGTCAGACTAAAGATCAAGGGCATCCTAGCACCGTGTGTCTGAGGGATAATGACTGTCCCTGGTAGAGAGCTGGATGGCCATGGGTATGTTGGAAACAGTGGCTGGGCCAGTGGACTTGGAGCTAGAACTTGG---TTTTGCTCTTGGCGTTGACACAGGGTGGCTGTCTTCGCTTAGGAAGATTTTGAATCTCAGTCTCTTCTGTAAGGATCTGGTAGCTTTTCCAAAGCCAGTCCATCTGTCCTATGGAATTTGATGCCACATG-----------------------------ACTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178792041 709 + 195471971 -TTTAAAAATTACATATACAGTTTCCAG-TTTGTCTTTTGGAAATTACACCTAGCTGTTCATGTATCAGGTCTTCTCATGAACACAT----TTAACGTACAGGCTTTGCACATATGTGTCCA---------TAGAGACTAGGAATGAAGC-TCTCATAGTTATTTGAAGGGCCAAGGTCTTGCCACTCCCTGTGTATAGT-CAAGC---------CACCATG---------CATAACAAGAGAGCTTCTAAGATATTAACACGTCCCAAATTTAGCATTTATGTTCTTGAAAGCACTTCCTTT-CCCCATAAAGATCTAACTGAACATTAGAAGT-TTTGACCTTTTAGTTTTTTTTAAAG--AAGTGTTTGATGGTCTGATTGTTTTCAACAAAAGAGGTCTGTTCTC----TTGCTGTAGGGAGAG-ATTCCTCAGTTCTTTTGAGAGAGATGAAAACCCTCTCTTAAGCCTGCCAGAGTGGAGATCAAGGGCATCCCAGCC---TGTCTCTGAAGGATGATTCCTGTCCATGAAAGGAAACTGGGTGGTAGTGGGCATGTTGAAA-----------ACCAATGGGCTTGGCTCTAGAACTTGGCA-TTTTATTCATGGC-TGTCTACAGGGTGGCTGTCATGCCTTGTG-ACTTTTTGAATATATGTTCC--CTGTGAAGATCTGCTGGCTTTTCCAAGGCCAGTGTGGCTCTCCTATGGGATTTGATATCATAGGATCCATTTTCCTATGAGGTCTGTTTCTTCACCC i mm10.chr1 C 0 C 0 s canFam3.chr7 36358526 701 + 80974532 tctctcaaataa---ataaaa-----------atcttttaaaaaCTGCATCTGAATTTCCATCTATCACTCTTCCTTGTGAGTATACCTCATTAACACAAAGAGTTCATGTCTCCTTGGCCA---------TACAGGACATGAAGTCAACTTCTAAT--TTATATAAAGTACCAAGATTTTTATGCTCCTTTTGGGTAGCTCTGACACCCCTTCTCCCCCTGGAGATAACACATGTCAAA-AAGTTTTTAAGATACTGGCTTTTCCCAAATTCTGCATTTACATCCTTGAAAGAGCCTCCCCCACCCC---CCGATCTAACTAAATATTAGAGGTATTTGACCCCTTA---TTTAAAAAAAAGAAATGTTTGATGTTCTGACTATTTTCAACAAAAGATCTCTGTTCTCAAATGCGTTCTATGGAGAGAATTCCTCAGTTCTTTTGAGAGGGATAAAAA--TTCTCTTAAGTCGGCCAGACTGAAGATCAAGGGTGTCAGAGCACCACATGTCTGAAGAGTGATCATCATCATGAAAAGAG-GCTTGATGGTGAGGGGGATGTTTCAACCCCTGGATGGACCAATGGATTTGGAGCTAGAACTTAGGAGTTTTACTCTTGGTGTTGTCACAGCATGG------TGCCTTAAGAAGATTTGAATCTCCTGTCTCTCCTGGAAGGCTTTAATTA-TTTCCTAGGACAAGCCCAGCTCTACTTTGGGAGTTTTGTCCAGGTG-----------------------------GCTC i canFam3.chr7 C 0 I 88 a score=835092.000000 s hg38.chr1_KI270759v1_alt 198179 281 + 425601 CAGCTACCCTGGTAGGCCTTTCCCAGGCGTTGGTCAGAGATATGATCCAAAGGCTGTCTGTAGAAGATTGTTCT----CTCCTGAGTGTTCTGATGCAGCCAGCACAAGGGTTTCCTAAGGAAAGGAACCTGGTCCTGCTTCGGTCGT--TTTCGTAT-CCCCTAGGGGCTGCTGAATAAAGTACTAGTTCCCAAGCTTT-----CTGTCATATCTTCTCTGCACACTTCTGGAGTAGAGTGGGTGAGGGCAAGGCCAGGAGGTCA-GTGCCACAG-CGTGGGAAGAGAG-GAGGC s panTro4.chr1 224951266 281 + 228333871 CAGCTACCCTGGTAGGCCTTTCCCAGGTGTTGGTCAGAGATATGATCCAAAGGCTCTCTGTAGAAGATTGTTCT----CTCCTGAGTGTTCTGATGCAGCCAGCACAAGGGTTTCCTAAGGAAAGGAACCTGGTCCTGCTTCATTCGT--TTTCGTAT-CCCCTAGGGGCTGCTGAATAAAGTACTAGTTCCCAAGCTTT-----CTGTCATATCTTCTCTGCACACTTCTGGAGTAGAGTGGGTGAGGGCAAGGCCAGGAGGTCA-GTGCCACAG-TGTGGGAAGAGAG-GAGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226309361 279 - 229942017 CAGCTACCTTAGTAGTCCTTTCCCAGGCGTTGGTCAGAGACATGATCCAAAGCCTGTCTGTAGAAGATTGTTCT----CTCCTGA--GTTCTGATGCAGCCAGCACAAGGGTTTCCTAAGGAAAGGAACCTGGTCCTGCTTCGGTCGT--TTTCGTAT-CCCCTAGGGGCTGCTGAATAAAGTACTAGTCCCCAAGCTTT-----CTGTCATATCTTCTCTGCACACTTCTGGAGTAGAGTGGGTGAGGGCAAGGCCAAGAGGTCA-GCGCTGCAG-CATGGGAAGACAG-GAGGC i ponAbe2.chr1 C 0 M 833 s nomLeu3.chr5 140199626 280 - 143122389 CAGCTACCCTGGTAGGCCTTTCCCAGGCGTGGGTCAGAGACATGATCCAAAGGCTGTCTGTAGAAGGTTGTTCT----CTCCTGAGTGTTCTGATGCAGCCAGCACAAGGGTTTCCTAAGGAAAGGAACCTGGTCCTGCTTCGGTCGT--TTTCGTAT-CCCC-AGGAGCTGCTGAATAAAGTACTAGTTCCCAAGCTTT-----CTGTCATACCTTCTCTGCACACTTTTGGAGTAGAGTAGGTGAGAGCAAGGCCAGGAGGTCA-GTGCCGCAG-CGTGGGAAGAGAG-GAGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16914002 280 - 229590362 CAGCTACCCCGGTAGGCCTTTCGCAGGCGTTGGTCAGAGCCATGATCCGAAGGCTCTCTGTAGAACGTTGTTCT----CTCCTGAGAGCTCTGGTGCCGCCAGCACCAGGGTTTCCTAAGG-GAGGAACCTGGTCCTGCTGCGGTCGT--TTTCGTAT-CCCCTAGGGGCTGCTGAGTAAAGTACTAGTTCCCAAGCTTT-----CTGTCATGTCTTCTCTGCACATTTTCGGAGTAGAGTGGGTGAGGGCAAGGCCAGGAGGTCA-GTGCCGCAG-TGAGGGAAGAGAG-GAGGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223677264 280 - 227556264 CAGCTACCCCGGTAGGCCTTTCGCAGGCGTTGGTCAGAGCCATGATCCGAAGGCTCTCTGTAGAAGGTTGTTCT----CTCCTGAGAGCTCTGGTGCCGCCAGCACCAGGGTTTCCTAAGG-GAGGAACCTGGTCCTGCTGCGGTCGT--TTTCGTAT-CCCCTAGGGGCTGCTGAGTAAAGTACTAGTTCCCAAGCTTT-----CTGTCATGTCTTCTCTGCACATTTTCGGAGTAGAGCGGGTGAGGGCAAGGCCAGGAGGTCA-GTGCCGCAG-TGTGGGAAGAGAG-GAGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16727595 279 - 220367699 CAGCTACCCCGGTAGGCCTTTCGCAGGCGTTGGTCAGAGCCATGATCCGAAGGCTCTCTATAGAAGGTTGTTCT----CTCCTGAGAGCTCTGGTGCCGCCAGCACCAGGGTTTCCTAAGG-GAGGAACCTGGTCCTGCTGCGGTCG---TTTCGTAT-CCCCTAGGGGCTGCTGAGTAAAGTACTAGTTCCCAAGCTTT-----CTGTCATGTCTTTTCTGCACATTTTCGGAGTAGAGCGGGTGAGGGCAAGGCCAGGAGGTCA-GTGCCGCAG-TGTGGGAAGAGAG-GAGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82525887 280 + 85787240 CAGCTACCCCGGTAGGCCTTTCGCAGGCGTTGGTCAGAGCCATGATCCGAAGGCTGTCTGTAGAAGGTTGTTCT----CTCCTGAGAGCTCTGGTGCCGCCAGCACGAGGGTTTCCTAAGG-AAGGAACCTGGTCCTGCTTCGGTCGT--TTCCGTAT-CCCCTAGGGGCTGCTGAGTAAAGTACTAGTTCCCAAGCTTT-----CTGTCATGTCTTCTCTGCACACTTTCGGAGTAGAGCGGGTGAGGGCAAGGCCAGGAGGTCA-GTGCCGCAG-TGTGGGAAGAGAG-GCGGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14206755 282 - 49578535 CAGCCACCCCAGTAGGCCTTTCCGGGGCATGGGTCAGAGGCATGAGCCAGAGGCTCTCTGTAGAAGGCTGTTCT----CTCCTGAGTGTCCTGATGCAGCCAGCAC-AGGGCTTCCTAGGGAAAGGAACCTGCTCCTGCTTCCGTCAT--TTTCATATACCCCTAAGGGCTGCTGGATAAAATGCTAGTTCCCCAGCTTC-----CTGTCACATCTTCTGTGCACACTTTTGGAGTAGAGAGGGTGAGGGCAAGGCCAGGAGGTCA-GTGCTGAAGCCGTGGGAAGACAG-GACGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178792750 265 + 195471971 CAACTAACTTGCTGAGCCTGTC-TGGCTCTTTACTGGCAGCACTACCCAAAG-CTTTCTGTAGAAGGTTGCGTTGCACATCCAGGG------------GCCAAGTC-GGGGCTTCCCAAGGAAGAGAGGCCCACTCCGCTCCAGCCCTGGTCTCAGAT--CCTTAGGTGCTGCTTAAT----CATCAGCTTTCCAGATCTCAGAACCGCTGCATCTTCTTAGCA---------AGTAGGTCAAGTGAGGGCAGGGACAGGAAGTCAGGGGCTGCAG-CTAGGGGGAAGGGTGGGGC i mm10.chr1 C 0 C 0 e canFam3.chr7 36359227 88 + 80974532 I a score=319044.000000 s hg38.chr1_KI270759v1_alt 198460 142 + 425601 CCTGGG-CCCTATTCT-CTCTG-------GGGAGCTTTACAT-CACCCATTG-CTCTCTCCATCTCCCCAGGGCCCAGATGGCTCCATTCTAGAGCTTCTCCTCCAACCCCTTCCCACCTTCCATCCCAAACACTTTCCTCTCTCCTTCTTGG s panTro4.chr1 224951547 142 + 228333871 CCTGGG-CCCTATTCT-CTCTG-------GGGAGCTTTACAT-CACCCATTG-CTCTCTCCATCTCCCCAGGGCCCAGATGGCTCCATTCTAGAGCTTCTCCTCCAAACCCTTCCCACCTTCCATCCCAAACACTTTCCTCTCTCCTTCTTGG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140199906 146 - 143122389 CCTGGG-CCCTATTCT-GTCTGGAAAGATGGGAGCTTTCCAT-CACCCATTG-CTCCCTCCATCTCCCCAGGGCCCAGATGGCTCCATTCTAGAGCTTCTCCTCCAACCCCTTCCCATCTTCCATCCCAAACACTTTCctctctc---cttgg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16914282 143 - 229590362 CCTGGGCCCCTATTCT-GTGTA-------GGGAGCTTTACAT-CACACGTTG-CTCTCTCCATCTCCCCAGGGCTCAGATGGCTCCATTCTAGAGCTTCTCCTCCAACCCCTTCCCACCTTCCATCCCCAAAAGTTTCctctctccttctttg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223677544 143 - 227556264 CCTGGGCCCCTGTTCT-GTGTA-------GGGAGCTTTACAT-CATACGTTG-CTCTCTCCATCTCCCCAGGGCTCAGATGGCTCCATTCTAGAGCTTCTCCTCCAACCCCTTCCCACCTTCCATCCCCAAAAGTttcctctctccttctttg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16727874 143 - 220367699 CCTGGGCCCCTATTCT-GTGTA-------GGGAGCTTTACAT-CACACGTTG-CTCTCTCCATCTCCCCAGGGCTCAGATGGCTCCATTCTAGAGCTTCTCCTCCAACCCCTTCCCACCTTCCATCCCCAAAagtttcctctctccttctttg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82526167 143 + 85787240 CCTGGG-CCCTATTCT-GTGTA-------GGGAGCTTTACAT-CACACGTTGTCTCTCTCCATCTCCCCAGGGCTCAGATGGCTCCATTCTAGAGCTTCTCCTCCAACCCCTTCCCACCTTCCATCCCCAAAAGTTTCctctctccttctttg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14207037 139 - 49578535 CCTGGG-CCCTGTTCC-GTCCG-------GGGAGCTTCACATCCACACATTG-CTCTCTC---ATCTCCAGGGCACCGACGG-TTCATTCTAGAGCTTCTCCTCCAACTCCTTCCCACCTTCCATCCCACACACTTCCCTCTCTCCGTCTTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178793015 140 + 195471971 CCTGCG-CCATGTTTGAATGGA-------GATAGTTTTCTGC-CTATCCCTG-CTCCTTTTGTCTCT---AGGCACAGATGGCTTCATTCTGTACATCTTTCCCCCAtttcttcctctttcctatccttccctttcttctctctccctttccg i mm10.chr1 C 0 C 0 e canFam3.chr7 36359227 88 + 80974532 I e ponAbe2.chr1 226309640 833 - 229942017 M a score=146075.000000 s hg38.chr1_KI270759v1_alt 198602 107 + 425601 --tctctctctctctctttctctgcccttccttccttccctccttccctccctccctcccttcc-tctctttctccctccctccttccctccttccctccttccctccct s panTro4.chr1 224951689 97 + 228333871 tctctctctctctctctttctctgcccttccttcct------------tccctccctcccttcc-tctctttctccctccctccttccctccttccctccctccctccct i panTro4.chr1 C 0 I 597 s nomLeu3.chr5 140200052 97 - 143122389 --------tctctctctttctctgcctttccttcct----tccctccctccctccctcccttcc-tctctttctccttcccttcttccctccttccctccctccttcctt i nomLeu3.chr5 C 0 I 8 s rheMac3.chr1 16914425 105 - 229590362 ----tctctctctctctttctctAtccttccttccttccctccttct-tccctccctcccttccttcccctcctccctccttccctccctcccttcgtgttttcctttct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223677687 105 - 227556264 ----tctctctctctctttctctgtccttccttccttccctccttct-tccctccctcccttccttcccctcctccctccttccctccctcccttcgtgttttcctttct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16728017 105 - 220367699 ----tctctctctctctttctctgtccttccttccttccctccttct-tccctccctcccttccttcccctcctccctccttccctccctcccttcgtgttttcctttct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82526310 105 + 85787240 ----tccctctctctctttctctgtccttccttccttccctccttct-tccctccctcccttccttcccctcctccctccttccctccctcccttcgtgttttcctttct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14207176 44 - 49578535 ----------------------------Cccttcct------------tcccgccctccctcccttcctgttttcctttcttcc-------------------------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178793155 0 + 195471971 C e canFam3.chr7 36359227 88 + 80974532 I e ponAbe2.chr1 226309640 833 - 229942017 M a score=37672.000000 s hg38.chr1_KI270759v1_alt 198709 44 + 425601 ccctTCATGTTTTCCtttcttccttctttc----tttttc-----tttttttt s nomLeu3.chr5 140200157 49 - 143122389 cccttcatgttttcctttcttccctcttcc----tttttcctttttttttttt i nomLeu3.chr5 I 8 C 0 s rheMac3.chr1 16914530 43 - 229590362 tccttc-tttctttTTCttttctttctttc----tttttt-----tttttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223677792 42 - 227556264 tccttc-tttctttttcttttctttctttc-----ttttt-----tttttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16728122 47 - 220367699 tccttc-tttctttttcttttctttgtttctttttttttt-----tttttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82526415 44 + 85787240 tccttc-tttctttttcttttcttagtttc---ttttttt-----tttttttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14207220 31 - 49578535 -----------ttccttccttccttccttc----tttttc-----tttttt-- i calJac3.chr19 C 0 C 0 e mm10.chr1 178793155 0 + 195471971 C e canFam3.chr7 36359227 88 + 80974532 I e ponAbe2.chr1 226309640 833 - 229942017 M e panTro4.chr1 224951786 597 + 228333871 I a score=429321.000000 s hg38.chr1_KI270759v1_alt 198753 192 + 425601 tgatacagggtcttgctctgttacccaggctgaagtgccacccctgtgatgcctagtggtacaaacactgctcactgcagtcttgacctcctgggctcaagcaatcttcctgcttca--------------gtagctgggactgcaggtccacaccaccactcccagctagttttttaatttttttgtgcagatagtgtctcacta s panTro4.chr1 224952383 192 + 228333871 tgatacagggtcttgctctgttacccaggctgaagtgccacccctgtgatgcctagtggtacaaacactactcactgcagtctcgacctcctgggctcaagcaatcttcctgcttca--------------gtagctgggactgcaggtgcacaccaccactcccagctagttttttaatttttttgtgcggacagtgtctcacta i panTro4.chr1 I 597 C 0 s nomLeu3.chr5 140200206 192 - 143122389 tgatacagggtctcgctctgttagccaggctgaagtgccacccctgtgtcgcctagtggtacaaacactactcactgcagtctcgacctcctgggctcaagcaatcttcctgcctca--------------gtagctgggactgcaggtccacgccaccactctcagctagttttttaatttttttgtacagatagtgtctcacta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16914573 201 - 229590362 tgatacagggtcttgctctgttgcccaggctgaagtgctcccccttcgtcgcctagtggtacaaacactgctcactgcagtctcgacctcccgggctcaagcaatcttcctgcctca-----gtatcccaagtagatgggactgcaggtccacgctaccactcccagctagattttcattttttttgtacagatagtgtctcacta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223677834 201 - 227556264 tgatacagggtcttgctctgttgcccaggctgaagtgccaccccttcgtcgcctagtggtacaaacactgctcactgcagtctcgacctcccgggctcaagcaatcttcctgcctca-----gtatcccaagtagatgggactgcaggtccacgctaccactcccagctagattttcaatttttttgtacagatagtgtctcacta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16728169 201 - 220367699 ttatacagggtcttgctctgttgcccaggctgaagtgccacCCCTTCGTCGCTTAGTGGTACAaacactgctcactgcagtctcgacctcccgggctcaagcaatcttcctgcctca-----gtatcccaagtagATGAGACTGCAGGTCCAcgctaccactcccagctagattttcaatttttttgtagagatagtgtctcacta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82526459 206 + 85787240 tgatacagggtcttgctttgttgcccaggctgaagtgccacccctttgtcgcctagtggtacaaacactgctcactgcagtcttgacctcctgggctcaagcaatcttcctgcctcagtatcgtatcccaagtagatggaactgcaggtccacgctaccactcccagctagattttcaatttttttgtagagatagtgtctcacta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14207251 198 - 49578535 ggatacaggctcttgctctgtggccccggctgaggtgccgcccctgtgctgcctagtggtatggacactgctcactgcagtctc-acctcctgggctcaagcgatcttcctgcctca-----gtctcctgagcagcggggactgcaggtccatgccaccgctcccagctggttttttaattttgatgt--agatagtgtctcccta i calJac3.chr19 C 0 C 0 e mm10.chr1 178793155 0 + 195471971 C e canFam3.chr7 36359227 88 + 80974532 I e ponAbe2.chr1 226309640 833 - 229942017 M a score=245607.000000 s hg38.chr1_KI270759v1_alt 198945 82 + 425601 tgttgcccaggctggtctcgaactccttgcctcaagag-tcctcccatcttggcctcctgaagtgctgggattacaggtgtga s panTro4.chr1 224952575 82 + 228333871 tgtggcccaggctggtctcgaactccttgcctcaagcg-tcctcccatcttggcctcctgaagtgctgggattacaggtgtga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226310473 83 - 229942017 tgttgcccaggctggtctcgaactctttgcctcaagtgatcctcccatcttggtgtcctgaagtgctaggattacaggtatga i ponAbe2.chr1 M 833 C 0 s nomLeu3.chr5 140200398 83 - 143122389 tgttgcccaggctggtctcgaactccttgcctcaagtgatcctcccatcttggcctcctgaagtgctgggattacaggtgtga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16914774 83 - 229590362 tgttgcccaggctggtcttggactccttgcctcaagcgatcctcccaccttggcctcctgaagtgctgggattgcaggtgtaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223678035 83 - 227556264 tgttgcccaggctggtcttggactccttgcctcaagtgatcctcccaccttggcctcctgaagtgctgggattgcaggtgtaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16728370 83 - 220367699 tgttgcccaggctggtcttggactccttgcctcaagtgatcctcccaccttggcctcctgaagtgctgggattgcaggtgtaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82526665 83 + 85787240 tgttgcccaggctggtcttggactccttgcctcaagtgatcctcccaccttggcctcctgaagtgctgggattgcaggtgtaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14207449 82 - 49578535 tgttgcccaggctggtctctaactccttgcctcaagcgatcctcctaccttggcctcctgaagtgcatgg-ttacaggtgtga i calJac3.chr19 C 0 C 0 e mm10.chr1 178793155 0 + 195471971 C e canFam3.chr7 36359227 88 + 80974532 I a score=157375.000000 s hg38.chr1_KI270759v1_alt 199027 47 + 425601 gccactgtgcccagccTCTCTGCTCTTTCCCTTCCTTCTC-------CTCTTAG s panTro4.chr1 224952657 47 + 228333871 gccactgcacccagccTCTCTGCTCTTTCCCTTCCTTCTC-------CTCTTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226310556 47 - 229942017 gccactgtgcccagcCTCTCTGCTCTTTCGCTTCCTTCTC-------CTCTTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140200481 47 - 143122389 gccactgtgcccagcctctctgctctttcccttccttctc-------ttctTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16914857 47 - 229590362 gccactgtgcccagccTCTCTGCTCTTTCCCTTCCTTCTC-------TTCTCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223678118 47 - 227556264 gccactgtgcccagcctctctgctctttcccttccttctc-------ttcTCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16728453 47 - 220367699 gccactgtgcccagcctctctgctctttcccttccttctc-------ttctcag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82526748 47 + 85787240 gccactgtgcccagcctctctgctctttcccttccttctc-------ttctcAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14207531 47 - 49578535 gtcgctgtgctcagcctctctgctccttccctcccttcTC-------TTCTCTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36359315 53 + 80974532 GCCACTTTCCCCC-CTTCCTTTCTCTCTCCATGCTTTTTCTCTTGTTTTCTCAG i canFam3.chr7 I 88 C 0 e mm10.chr1 178793155 0 + 195471971 C a score=546549.000000 s hg38.chr1_KI270759v1_alt 199074 169 + 425601 TTAAAATTGTAGCCGTGGTCAGAGGTGGCTCTGTCTCCTCG--------TAGAAAGCAGGGAGCA------------AGACTACAAAAGAAATGGTAAAATTTTAACGAATTTTAAATGAATAAATCCCTAATTTCCTATGGAATGACAAACTAAATGATGGTTTGTAGTTGGAAAATTAA-------GCAATAAA s panTro4.chr1 224952704 168 + 228333871 TTAAAATTGTAGCTGTGGTCAGAGGTGGCTCCATCTCCTCG--------TAGAAAGCAGGGAGCA------------AGGCTACAAAAGAAATGGTAACATTTTAATGAATTTTAAATGAATAAATCCGTAATTTCCTA-GGAAAGACAAACTAAATGATGGTTTGTAGTTGGAAAATTAA-------GCAATAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226310603 169 - 229942017 TTAAAATTGTAGCTGTGGTCAGAGCTGGCTCCATCTCCTCA--------TAGAAAGCAGGGAGCA------------AGGCTACAAAAGAAATGGTAAAATTTTAATGAATTTTAAATGAATAAATCCCTAATTTCCTATGGAATGACAAACTAAATGATGGTTTGTAGTTGGAAAATTAA-------GCAATAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140200528 168 - 143122389 TTAAAATTGTAGCTGTGGTCAGAGCTGGCTCCATCTCCTCA--------TAGAAGGCAGGGAGCA------------AGACTACAAAAGAAATGGTAAAATGTT-GTGAATTTTAAATGAATAAATCCCTAATTTCCTATGGAATGACAAACTAAATGATGGTTTGTAGTTGGAAAATTAA-------GCAATAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16914904 169 - 229590362 TTAAAATTGTAGCTGTGGTCAGGGCCAGCTCCATCTCCTCA--------TAGAAAACAGGGAGCA------------AGGCTACAAAAGAAATGGTGAAATTTTAATGAATTTTAAATGAATAAATCCCTAATTTCCTACGGAATGACAAACTAAATAATGGTTTGTAGTTGGAAAATTAA-------GCAGTAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223678165 169 - 227556264 TTAAAATTGTAGCTGTGGTCAGGGCCGGCTCCATCTCCTCA--------TAGAAAACAGGGAGCA------------AGGCTACAAAAGAAATGGTGAAATTTTAATGAATTTTAAATGAATAAATCCCTAATTTCCTACGGAATGACAAACTAAATGATGGTTTGTAGTTGGAAAATTAA-------GCAGTAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16728500 169 - 220367699 tTAAAATTGTAGCTGTGGTCAGGGCCGGCTCCATCTCCTCA--------TAGAAAACAGGGAGCA------------AGGCTACAAAAGAAATAgtgaaattttaatgaattttaaatgaataaatcccTAATTTCCTACGGAATGACAAACTAAATGATGGTTTGTAGTTGGAAAATTAA-------GCagtaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82526795 169 + 85787240 TTAAAATTGTAGCTGTGGTCAGGGCCGGCTCCATCTCCTCA--------TAGAAAACAAGGAGCA------------AGGCTATAAAAGAAATGGTGAAATTTTAATGAATTTTAAATGAATAAATCCCTAATTTCCTACGGAATGACAAACTAAATGATGGTTTGTAGTTGGAAAATTAA-------GCAGTAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14207578 166 - 49578535 TTAAAACTGTAGCTGTGCTCAGGGCTGACTCGCTCTCTTCA--------CAGAAAACAGGAAGCA------------AGGCTACAAAAGAAACGGTAAAATTGTAATGAATTCTAAGTGCACGAACCCCTAATGTCCTATGGAATGACAGACTAAATGGTGGTTTCCATTTGGAAAATT----------CAGTAAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178793155 175 + 195471971 ttAAATTCATAGTGGTATTCAGGCCCAGCGCCATTTTATAA-TGAGGTTTAAAAAATGGGGCACA-----------GAGAGTATAACAAAAACTGTCAA---------AATTTAAAGTGAACAAACCCTCAATTTCCTTCTAAAAGATAAACTACATCATGCCTGAACTTTGGAAAGGTAATTATTTCACAATAAT i mm10.chr1 C 0 C 0 s canFam3.chr7 36359368 179 + 80974532 ATCAAATTGTAGCGGTGATCAGGTTTATCCCC-TCTCATAACCAAGCTTGGAAAAACAGGGAGTACAAGACCACAGCAGGCTCTGGAAGACATTGTAAAACT---ACGTATCTTAAG----CAAATCCTTAACTTCCTACTGTAAGCCCAATTGCAAATTGATTTTCACCTGGGAAAAT---------GTAGTAAA i canFam3.chr7 C 0 I 50 a score=51500.000000 s hg38.chr1_KI270759v1_alt 199243 26 + 425601 ATACt-----------------------------tttttattttttgagagagag s panTro4.chr1 224952872 26 + 228333871 GTACt-----------------------------tttttattttttgagagagag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226310772 26 - 229942017 GTACt-----------------------------tttttattttttgagagagaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140200696 26 - 143122389 GTACt-----------------------------tttttattttttgagagagag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16915073 55 - 229590362 GTACttttttttttttttttttttttgagtttttttttttttttttgagagagag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223678334 37 - 227556264 GTACttttttt------------------tttttttttttttttttgagagagag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16728669 36 - 220367699 gtactttttt-------------------tttttttttttttttttgagagagag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82526964 31 + 85787240 GTACt------------------------tttttttttttttttttgagagagag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14207744 41 - 49578535 GTACA--------------ATATTGAGAtttctgttttttttttttgagagagac i calJac3.chr19 C 0 C 0 s mm10.chr1 178793330 21 + 195471971 ACACA----------------------------------ATGTTGTAGGagaaag i mm10.chr1 C 0 I 111 e canFam3.chr7 36359547 50 + 80974532 I a score=717402.000000 s hg38.chr1_KI270759v1_alt 199269 290 + 425601 tctcgctctgtcacccaggctggagtgcaatggcacac----------------------tcttggctcactgcaacctccgcctcccgggttcaagcgattctcctggctcag----cctcccaagtagttgggattacaggcacgtgccaccatgcctggctaatttttgtattttagtagagacggggtttcacca-tgttggccaggctgttctcgaactcatgacctcaagtgatccgcctgccttggcctccaaaagtgctgggattacagacatgagccactgcgcctcgccTATTTTTTTTTT----------TTTAAT s panTro4.chr1 224952898 287 + 228333871 tctcgctctgtcacccaggctggagtacagtggcacac----------------------tctcggctcactgcaacctccgcctcccgggttcaagcgattctcctggctcag----cctcccaagtagttgggattacaggcacgtgccaccatgcctggctaatttttgtattttagtagagacggggtttctcca-tgttggccaggctgttctcgaactcatgacctcaagtgatccgcctgccttggcctccaaaagtgctgggattacagacatgagccactgcgcctggccTATTTTTTTTTT-------------AAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226310798 291 - 229942017 tctcgctctgtcacccaggctggagtgcaatggcacac----------------------tctcggctcactgcaacctccgcctcccgggttcaagcgattctcctggctcag----cctcccaagtagctgggattacagacacccaccaccaagcctggctaatttttgtattttagtagagacagggtttcacta-tgttggccaggctgttctcgaactcctgacctcaagtgatccgcctgccttggcctccaaaagtgctgggattacagacgtgagccactgtgcctggcctatttttttttt---------ttttaat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140200722 288 - 143122389 tcttgctctgtcacccaggctggagtgcaatggcacac----------------------tctcggctcactgcaacctctgcctcccgagttcaagtgattctcctgcctcag----cctcccaagtagttgggattacaggcacgtgccaccacgcctggctaatttttgtattttagtagagacggggtttcacta-tgttggccaggctgttctcgaactcctgacctcaagtgatctgcccgctttggcctcccaaagtgctgggattacagacgtaagccactgcgcctggccTATTTTTTTTTT------------TAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16915128 277 - 229590362 tctcgctgtggcacccaggctggag-----tggcacaa----------------------ccttggctcaccacaacctctgcctcccaggttcaagcgattctcctgcctcagcctccctcccaagtagctgggattacaggcacgtgccaccatgcctggctaatttttgtatttt--tagagacagggtttcacca-tgttggccaggctgtt------ctcctgacctcaggtgatttgcccaccccggccgcccaaagtactgggattacagatgtgagccactgcgcctgacAAATTTTTTTT--------------AAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223678371 299 - 227556264 tctcgctgtggcacccaggctggag-----tggcaccaccttggctcaccacaacctctgccttggctcaccacaacctctgcctcccaggttcaagcgattctcctgcctcagcctccctcccaagtagctgggattacaggcacgtgccaccatgcctggctaatttttgtatttt--tagagacagggtttcacca-tgttggccaggctgtt------ctcctgacctcaggtgatttgcccaccccggcctcccaaagtactgggattacagatgtgagccactgcgcctgacAAATTTTTTTT--------------AAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16728705 300 - 220367699 tctcgctgtggcacccaggctggag-----tggcacaaccttggctcaccacaacctctgccttggctcaccacaacctctgcctcccaggttcaagcgattctcctgcctcagcctccctcccaagtagctgggattacaggcacgtgccaccatgcctggctaatttttgtatttt--tagagacagggtttcaccattgttggccaggctgtt------ctcctgacctcaggtgatttgcccaccccggcctcccaaagtactgggattacagacgtgagccactgcgcctgacaaatttttttt--------------aaat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82526995 276 + 85787240 tctcgctgtggcacccaggctggag-----tggcacaa----------------------ccttggctcaccacagcctctgcctcccgggttcaagcgattctcctgcctcagcctgcctcccaagtagctgggattacaggcac-cgctaccatgcctggctaatttttgtatttt--tagagacagggtttcacca-tgttggccaggctgtt------ctcctgacctcaggtgatttgcccaccccggcctcccagagtactgggattacagacgtgagccactgcgcctgacAAATTTTTTTA--------------AAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14207785 300 - 49578535 ttttgctctgtcatgtaggctggagcacagtggtgcaa----------------------tctcggctcactgcaacctccacctcctggattcaagcaattctgctgcctcag----cctcccatgtagctgggattacaggcacccaccaccacggctggctaagttttgtattttattagagacaggatttcgcca-tgttggccaggctgttcttgaactcctgaccttcattgatctgcccacttcagtctcccaaagtgctgggattacagacatgagccaacatgcttggtcTGGTTTTCTTTGTTTTGTTTTTTTAAAT i calJac3.chr19 C 0 C 0 e mm10.chr1 178793351 111 + 195471971 I e canFam3.chr7 36359547 50 + 80974532 I a score=37287.000000 s hg38.chr1_KI270759v1_alt 199559 10 + 425601 AAGTCTATAA s panTro4.chr1 224953185 10 + 228333871 AAGTCTATAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226311089 10 - 229942017 aaGTCTATAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140201010 10 - 143122389 AAGTCTATAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16915405 10 - 229590362 AAGTCTATAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223678670 10 - 227556264 AAGTCTATAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16729005 10 - 220367699 aagtctaTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82527271 10 + 85787240 AAGTCTATAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14208085 10 - 49578535 AAGTCTATAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178793462 10 + 195471971 AAGCTTACAG i mm10.chr1 I 111 C 0 e canFam3.chr7 36359547 50 + 80974532 I a score=396393.000000 s hg38.chr1_KI270759v1_alt 199569 106 + 425601 TAGGTATACACAGGGCCTGACTATTCCAGATAGTGTCAGCTGTGTAGTTTTCTTATTAGCAGACTTGGGATCTATATTTATAGACAATTGAAGTTTTAAAGATGTA s panTro4.chr1 224953195 106 + 228333871 TAGGTATACACAAGGCCTGACTATTCCAGATAGTGTCAGCTGTGTAGTTTTCTTATTAGCAGACTTGGGAACTATATTTATAGACAATTGAAGTTTTAAAGATGTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226311099 106 - 229942017 TAGGTATACACAAGGCCTGACTATTCCAGATAATGTCAGCTGTGTAGTTTTCTTATTAGCAGACTTGGGATCTGTATTTATAGACAATTGAAGTTTTAAAGATGTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140201020 106 - 143122389 TAGGTATACACAAGGCCTGACTATTCCAGATAGTGTCAGCTGTGTAGTTTTCTTATTAGCAGACTTGGGATCTATATGTATAGACAATTGAAGTTTTAAAGATGTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16915415 106 - 229590362 TAGGTGTACACAAGACCTGACTATTCCAGATAGTGTCAGGTGTATAGTTTTCTTATTAGCAGACTTGAGATCTATATTTATAGACAATTGAAGTTTTAAAGATGTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223678680 106 - 227556264 TAGGTGTACACAAGACCTGACTATTCCAGATAGTGTCAGGTGTATAGTTTTCTTATTAGCAGACTTGAGATCTATATTTATAGACAATTGAAGTTTTAAAGATGTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16729015 106 - 220367699 TAGGTGTACACAAGACCTGACTATTCCAGATAGTGTCAGTTGTATAGTTTTCTTATTAGCAGACTTGAGATCTATATTTATAGACAATTGAAGTTTTAAAGAtgta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82527281 106 + 85787240 TAGGTGTACACAAGACCTGACTATTCCAGATAGTGTCAGGTGTATAGTTTTCTTATTAGCAGACTTGGGATCTATATATATAGACAATTGAAGTTTTAAAGATGTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14208095 106 - 49578535 TAGGTGTACACAAGACCTGACTATTCCAGATGGTGTCAGGGTTGTAGTTTTCTTATTAGCAGACTTGGGATCGATATTTCTGGGCAACTGAAGTTTTAAAGACGTA i calJac3.chr19 C 0 C 0 s mm10.chr1 178793472 106 + 195471971 TAAACATCCATAATGCCTACCTATTGTGTATAATTACTGGGCTACAGTTTTCTCATCAACTAACTTCAGCTCTATATTAGTAATCAATTGAAGTTTTGAAAACATG i mm10.chr1 C 0 C 0 s canFam3.chr7 36359597 104 + 80974532 TAGGCTCCCACAGTGCCTGACAGCTCCAAA--GTGACCAAGGGACTGTTTGCTCATTAGCTGACTTGAAATCCGTATTTGTGGACGGTTGAAGTCTTAAAGGTACA i canFam3.chr7 I 50 C 0 a score=4180.000000 s hg38.chr1_KI270759v1_alt 199675 7 + 425601 AAGAATT s panTro4.chr1 224953301 7 + 228333871 AAGAATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226311205 7 - 229942017 AAGAATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140201126 7 - 143122389 AAGAAtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16915521 3 - 229590362 AA----t i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223678786 3 - 227556264 AA----T i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16729121 3 - 220367699 aa----t i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82527387 3 + 85787240 AA----T i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14208201 7 - 49578535 AAGAATT i calJac3.chr19 C 0 C 0 s mm10.chr1 178793578 7 + 195471971 AAGAGCT i mm10.chr1 C 0 C 0 e canFam3.chr7 36359701 0 + 80974532 C a score=891207.000000 s hg38.chr1_KI270759v1_alt 199682 303 + 425601 -TATTTATTCATTCAtttattct----------------------------tttgagagggagtcttgctctgtcgcccaggctggagtgctgtggcacaatcttggctcattgcaacctctacttcccaggttc-agtgattctcctgcctcagcctcccaagtagctgggtttacaggtgcctgcaaccacgccctgctgatttttgtatttgtagtagagacggggtttcaccgtgttggccaggctggtcttgaactcctgacctcaggtgatccagccacctcagcctcccaaagttctgggattataggtatgagccactgcgGC------------TC s panTro4.chr1 224953308 303 + 228333871 -TATTTATTCATTCAtttattct----------------------------tttgagagggagtcttgctctgttgcccaggctggagtgctgtggcacaatcttggctcattgcaacctctacctcccaggttc-agtgattctcctgcctcagcctcctaagtagctgggtttacaggtgcctgcaatcacgccttgctgatttttgtatttgtagtagagacggggtttcaccgtgttggccaggctggtcttgaactcctgacctcaggtgatccagccacctcagcctcccaaagttctgggattataggtatgagccactgcgGC------------TC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226311212 303 - 229942017 -TATTTATTCATTCATTCAttct----------------------------tttgagagggagtctcgctctgtcgcccaggctggagtgcagtggcacaatcttggctcattgcaacctctacctcccaggttc-agtgattctcctgcctcagcctcccaaatagctgggtttacaggtgcctgcaaccacgccctgctgatttttgtatttgtagtagagacggggtttcaccgtgttggccaggctggtcttgaactcctgacctcaggtgatccagccacctcagcctcccaaagttctgggattataggtatgagccactgcgGC------------TC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140201133 331 - 143122389 -ctttctttctttctttctttctttctttctttctttctttctttctttcgtttgagagggagtctcgctctgtcgcccaggctggagtgcagtggcacaatcttggctcattgcaacctctacctcccaggttc-agtgattctcctgcctcagtctcccaagtagctgggtttacaggtgcctgcaaccacaccctgctgatttttgtatttgtagtagagacggggtttcactgtgttggccaggctggtcttgaactcctgacctcaggtgatccagccacctcagcctcccaaagttctgggattacaggtatgagccactgcATC------------TC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16915524 303 - 229590362 -cattcattcattcattcattct----------------------------tttgagagggagtctcgctctgtcacccaggctggagagcagtggcacaatcttggctcattgcaacccctatctcccaggttc-agtgattctcctgcctcagcctcccaagtagctgggattacaggtgcctgccaccgcgcgctgctggtttttatatttgtagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccacctcagcctcccaaagttctgggattacaggtctgagccactgcgGC------------TC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223678789 303 - 227556264 -CATTCATTCATTCAttctttct----------------------------tttgagagggagtctcgctctgtcacccaggctggagagcagtggcacaatcttggctcattgcaacccctacctcccaggttc-agtgattctcctgcctcagcctcccaagtagctgggattacaggtgcctgccaccgcgcgctgctggtttttatatttgtagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccacctcagcctcccaaagttctgggattacaggtctgagccactgcgGC------------TC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16729124 303 - 220367699 -cattcattcattcattcattct----------------------------tttgagagggagtctcgctctgtcacccaggctggagagcagtggcacaatctcggctcatcgcaacccctacctcccaggttc-agtggttctcctgcctcagcctcccaagtagctgggattacaggtgcccgccaccgcgcgcTGCTggcttttatatttgtagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccacctcagcttcccaaagtgctgggattacaggtctgagccactgcggC------------TC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82527390 303 + 85787240 -CATTCATTCATTCATTCAttct----------------------------tttgagagggagtcttgctctgtcacccaggctggagagcagtggcacaatcttggctcattgcaacctctacctcccaggttc-agtgattctcctgcctcaacctcccaagtagctgggattacaggtgcctgccaccgcgccctgctggtttttatatttgtagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgaccccaggtgatctgcccacctcagcctcccaaagttctgggattacaggtctgagccactgcgGC------------TC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14208208 316 - 49578535 ATATTTATGTAtttattttttct----------------------------tttgagagggagtcttgctctgttgcccaggctagagtgtagtggtacaatcttggctcattataacctccactttctaggttcaaatgatcctcctgcctcagcctcccaactagctgtgattacaggtacccgccaccacgcctggctgatttttgtatttttagtagagat-gggtttcaccgtgttggccaggctggtcttgaacttccgacctcaggcgatccaccagcctcagcctcccaaagttctgggattacaggtgtgaaccactgtgcctggccTAAAGAATT i calJac3.chr19 C 0 C 0 e mm10.chr1 178793585 0 + 195471971 C e canFam3.chr7 36359701 0 + 80974532 C a score=20674.000000 s hg38.chr1_KI270759v1_alt 199985 6 + 425601 ATACAT s panTro4.chr1 224953611 6 + 228333871 ATACAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226311515 6 - 229942017 ATACAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140201464 6 - 143122389 ATACAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16915827 6 - 229590362 ATACAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223679092 6 - 227556264 ATACAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16729427 6 - 220367699 ATACAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82527693 6 + 85787240 ATACAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14208524 6 - 49578535 ACATGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178793585 6 + 195471971 ATATAT i mm10.chr1 C 0 C 0 e canFam3.chr7 36359701 0 + 80974532 C a score=1683168.000000 s hg38.chr1_KI270759v1_alt 199991 468 + 425601 AAAGCATTATATACAATTGTCATTATATACTGTAATGTACCTTCATTC-----CTTCTG-------------TCTGAACAATGTGGATTTTAGAAATAATTACCAAATATAAACACTACTAAAATGTGTAGATTTGGTGGTGCAGCACATCAAGGAGCACAAATTTTACAAATTTCTTTTTAACCATCTCTGCGTTGTATTTTCAGAATACGGATGATTCATTTTAATCCTGGTGTCTTTAAATGATTAAGGATTTTCATACATGAGGTATTTCCCAC-AGGGAAATTCTA-AGGTAATTTGGGTATGATTCGTTTAGA-G--TTTTTCATTATTTACAACAATTTAGTAACCATTAGACTTTCTTCCTTGCATGTGAATACATACATATATTTTTACATCAAGTA------TTTCCATCGAATTTTAGCTGCTTA----TATTTTCTTTTTA-ACCATTACTTGGAATGGTATTTTCCTATAAGCGGGGAATAAAGAAACT s panTro4.chr1 224953617 468 + 228333871 AAAGCATTATATACAATTGTCATTATATACTGTAATGTACCTTCATTC-----CTTCTG-------------TCTGAACAATGTGGATTTTAGAAATAATTACCAAATATAAACACTACTAAAATGTGTAGATTTGGTGGTGCAGCACATCAAGGAGCACAAATTTTACAAATTTCTTTTTAACCATCTCTGCGTTGTAGTTTCAGAATACGGATGATTCATTTTAATCCTGGTGTCTTTAAATGATTAAGGATTTTCATACATGAGGTATTTCCCAC-AGGGAAATTCTA-AGGTAATTTGGGTATGATTCATTTAGA-G--TTTTTCATTATTTACAACAATTTAGTAACCATTAGAGATTCTTCCTCGCATGTGAATACATACATATATTTTTACATCAAGTA------TTTCCATCGAATTTTAGCTGCTTA----TATTTTCTTTTTA-ACCATTACTTGGAATGGTATTTTCCTATAAGTGGGGAATAAAGAAACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226311521 468 - 229942017 AAAGCATTATATACAGTTGTCATTATATACTGTAATGTACCTTCATTC-----CTTTTG-------------TCTGAACAATATGGATTTTAGAAATAATTACCAAATATAAACACTACTAAAATGTGTAGATTTGGTGGTGCAGCACATCAAGGAGCACAAATTTTACAAATTTCTTTTTAACCATGTCTGCGTTGTATTTTCAGAATACAGATGATTCATTTTAATCCTGGTGTCTTTAAATGATTAAGGATTTTCATACATTAGGTATTTCCCAC-AGGGAAATTCTA-AGGTAATTTGGGTACGATTCGTTTAGA-G--TTTTTCATTATTTATAACAATTTAGTAACCATTAGACTTTCCTTCTTGCATGTGAATACATACATATATTTTTACATCGAGTG------TTTCCATCGAATTTTAGCTGCTTC----TATTTTCTTTTTA-GCCATCACTTGGAATGGTATTTTCCTATAAGCAGGGAATAAAGAAACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140201470 468 - 143122389 AAAGCATTATATACAATTGTCATTATATACTGTAATGTACCTTCATTC-----CTTTTG-------------TCTGAACAATGTGGATTTTAGAAATAATTACCAGATATAAACACTACTGAAATGGGTAGATTTGGTGGTGCAGCACATCAAGGAGCACAAATTTTACAAATTTCTTTTTAACCATCTCTGCATTGCATTTTCAGAATATGGATGATTCAGTTTAATCCTGGTGTCTTTAAATGATTAAGGATTTTCATACATTAGGTATTTCCCAC-AGGGAAATTCTA-AGGTAATTTGGGTATGATTCATTTAGA-G--TTTTTCATTATTTATAACAATTTAGTAACCATTAGACTTTCTTTCTTGCATATGAATACATACATATATTTTTACGTCGAGTG------TTTCCATTGAATTTTAGCTGCTTA----TATTTTCTTTTTA-ACCATTACTTGGAATGGTGTTTTCCTATAAGCGGGGAATAAAGAAACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16915833 466 - 229590362 AAAGCATTATGTACAACTGTCATTATATACTGTAATGTACCTGCATTC-----CTTTTG-------------TCTGAACAATATGGATTTTAGAGATAATTGCCAAATATAAACACTACTAAAATGTGTAGATTTGGTGGTGCAGCACATAAAGGAGCACAAATTTTACAAATTTCTTTTTAACCATCTCTGCATTGTATTTTCAGAATATGGATGATTCATTTTAATCCTGGTGTCTTTAAATGATTAAGGATTTTCATACATTTGGTATTTCCCAC-AGGGAAATTCTA-AGGTAATTTGGGTATGATTTGTTTAGA-G--TTTTTCGTTATTTATAACAATTTAGTAACCATTAGACTTTCTTTCTTGCATATGAATATATA--TATTTTTTTACATAAAGTG------TTTCCATCGAGTTTTAGCTGCTTA----TATGTTCTTTTTA-ACCGTTACTTGGAATGGTATTTTCCTATACGCGGGGAATAAAGAAACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223679098 466 - 227556264 AAAGCATTATGTACAACTGTCATTATATACTGTAATGTACCTGCATTC-----CTTTTG-------------TCTGAACAATATGGATTTTAGAGATAATTGCCAAATATAAACACTACTAAAATGTGTAGATTTGGTGGTGCAGCACATAAAGGAGCACAAATTTTACAAATTTCTTTTTAACCATCTCTGCATTGTATTTTCAGAATATGGATGATTCATTTTAATCCTGGTGTCTTTAAATGATTAAGGATTTTCATACATTTGGTATTTCCCAC-AGGGAAATTCTA-AGGTAATTTGGGTATGATTTGTTTAGA-G--TTTTTCGTTATTTATAACAATTTAGTAACCATTAGACTTTCTTTCTTGCATATGAATATATA--TATTTTTTTACATAAAGTG------TTTCCATCGAGTTTTAGCTGCTTA----TATGTTCTTTTTA-ACCGTTACTTGGAATGGTATTTTCCTATACGCGGGGAATAAAGAAACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16729433 466 - 220367699 AAAGCATTATGTACAACTGTCATCATATACTGTAATGTACCTGCATTC-----CTTTTG-------------TCTGAACAATATGGATTTTAGAGATAATTGCCAAATATAAACACTACTAAAATGTGTAGATTTGGTGGCGCAGCACATCAAGGAGCACAGattttacaaatttctttttaaccatCTCTGCGTTGTATTTTCAGAATACGGATGATTCATTTTAATCCTGGTGTCTTTAAATGATTAAGGATTTTCATACATTTGGTATTTCCCAC-AGGGAAATTCTA-AGGTAATTTGGGTATGATTTGTTTAga-g--tttttcattatttataacaATTTAGTAACCATTAGACTTTCTTTCttgcatatgaatatata--tatatttttacataaaatg------tttccATCGAGTTTTAGCTGCTTA----TATGTTCTTTTTA-ACCGTTACTTGGAATGGTATTTTCCTATACGCAGGGAATAAAGAAACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82527699 467 + 85787240 GAAGCATTATGTACAACTGTCATTATATACTGTAATATACCTGCATTC-----CTTTTG-------------TCTGAACAATATGGATTTTAGAGATAATTGCCAAATAGAAACACTACTAAAATGTGTAGATTTGGTGGTGCAGCACATCAAGGAGCACAAATTTTACAAATTTCTTTTTAACCATCTCTGCGTTGTATTTTCAGAATATGGATGATTCATTTTAATTCTGGTGTCTTTAAATGATAAAGGATTTTCATACATTTGGTATTTCCCAG-AGGGAAATTCTA-AGGTAATTTGGGTATGATTTGTTTAGA-G--TTTTTCATTATTTATAACAATTTAGTAACCATTAGACTTTCTTTCTTACATATGAATACATAT-TTTTTTTTTACATAAAGTG------TTTCCATCGAGTTTTAGCTGCTTA----TATGTTCTTTTTA-ACCATTACTTGGAATGGTATTTTCCTATACGCAGGGAATAAAGAAACT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14208530 464 - 49578535 AAAGCATTGTGTACAGTTGTCATTATATACTGTAATGTAGCTTCAATC-----CGTCTG-------------TCTGAACAATGTGGGTTTTAGAAATAATTACCAAATATAAACACTGCTCAAATGTGTAGATTTGGCTGTGCAGCACCTCAAGGAGCACAAA---TACAAATGTCTTTTTAACCATGTCTGTGTTGCATTTTCAGAATACACATGATTCATTTAAATCCTGGTGTCTTT-AATGATTAAGGATTTACACACATGTGGTATTTCCCAG-AGGGAAATTGTA-AGGTAATTTGGGTGTGATTCTTTCAGA-G--TTTTTCATTATTTATAACAGTTTAGTCATCATTAAGCTAACTTTCTTGCATATGAATACATACATGTATTTTTACATAAAGTG------TTTCCATAGAGTTTTAGCTGCTTC----TATTTTCTTTTTA-ACCATTACTTGGAATGGTGTTTTTCTGTAAGTGGGAAATAAAGAAACT i calJac3.chr19 C 0 I 301 s mm10.chr1 178793591 457 + 195471971 AAGCCATTATGTACAGCTGTCAAT-----CTGTAGCATCCCTTCATTCAATCATTCTTT-------------TCTGAATAATAAGGATTGAAGA-ATGATTACTAAATCTAATCACTAATAAATTACATAGATGTGGTACACAGGCATCTCAAGTAACACAAACCT--------GCTTCTACACCACCCTTACATC---TTTACAGAACATGTGTGATTCACTTTAGT--TGATGCTTTTAAATGATTATGGCTTTCTATACTCCTAGCACTTCCCAC-AGGCAAGTTGTATAGGTAATTTAGATATGGTTATTTTAGAGG--CTTTTCGTAATTTTTGACTATTTGGTAACCATTAGACCATCTTCCTTGTGAATGAATACATACA-----TTCTATAGAGAGTAGAGAGTGTGCCCTAGAGATTCAGA-ACTAG----TGTGTTCCTTTCATCCCATTACTCAGAATACCACCTTATATGGCTTGGGGAATATACAAAAT i mm10.chr1 C 0 C 0 s canFam3.chr7 36359701 462 + 80974532 AAAGCAGTACGTACAGCTCTCA--------TATAATGTCCCTTCATTC-----CTTTTGTTAGACTTCCTTTTCTGAATAGCATGGATCTCGAAACTAATGACCAAACGGAAACCTTCATAAAATGTGTAGACTCGGTGGCACAGCACATCGGGGAACGCAATCT---------GGTTTTTAACCACCTCTGTGTTGTGTTTTCAGAATACACATGGTTCATTTTAATCTTGATGTCTTGAAATG---AAGGATTTTCATGCGTTGGCTATTTCCCATGGGGGAAACTCAC-AGGTAATTCAGGAAGGGTTCTTTTAGA-GTTTTTTTCATTATTTGTAAGGATCTGGCAACCAGGACACCTTCTCCCTTGCATATGAATATCTA----TATTTTTATGTAAAAGG------TGCCACTGGTGTTTTAACTGCTTAGATTTCTTTTCTTTTTA-ATCATTATTTGGGACAGTATTTTCTTATAAG-AGGGAATA-GGAAGTT i canFam3.chr7 C 0 C 0 a score=1668180.000000 s hg38.chr1_KI270759v1_alt 200459 442 + 425601 ACTTCTGTCTCTCGGGTATATTAACAG-GGACAGTGGGGCCTAATTTCTTATGTCCCCTCAGT--TAGCCTTTGTCACAGACACTC----CTGTGTTTTGGGGTCAG-GAGGGAAGAGATCATTGCAGACTACAGTCATGGAATTTGATTCATTTAACTGAAAACTTTTTATT-------TTACTT--------------TACCCATCTTAAGTCCTCCTGATAGCCCTATAAAGTAATAAATTGTCCAAACCCCTTCAGGAAACTATTCTTAATTCCATCATCATTTA--TAGTTGCCTATCTGCCCAATAAACCAGAATTTAGCCTTAAAGCCATCGCTCTCTTAATCTGTATTATGA-TCTTGTCTTTATATATGAGT---TTTGTTT-TTCAAATTAGTGGATGGCCTTAGGTACCATTTTGTTATTCTGCTTGTTT-GTGTCTTCTGAAGACAGTCACAGCATCATAGAATACT s panTro4.chr1 224954085 445 + 228333871 ACTTCTGTCTCTCGGGTATATTAACAG-AGACAGTGGGGCCTAATTTCTTATGTCCCCTCAGT--TAGCCTTTGTCACAGACACTC----CTGTGTTTTGGGGCCAG-GAGGGAAGAGATCATTGCAAACTACAGTCATGGAATTTGATTCATTTAACTGAAAACTTTTTATT-------TTACTT--------------TACCCATCTTAAGTCCTCCTGATAGCCCTATAAAGTAATAAATTGTCCAAACCCCTTCAGGAAACTATTCTTAATTCCATCATCATTTA--TAGTTGCCTATCTGTCCAATAAACCAGAATTTAGCCTTAAAGCCATCGCTCTCTTAATCTATGTTACGA-TCTTGTCTTTATATATGAGTTGATTTGTTT-TTCAAATGAGTGGATGGCCTTAGGTACCATTTTGTTATTCTGCTTGTTT-GTGTCTTCTGAAGACagtcacagcatcatagaatact i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226311989 445 - 229942017 ACTTCTTTCTCTCAGGTATATTAACAG-GGACAGTGGGGCCTAATTTCTGATGTCCCCTCAGT--TAGCCTTTGTCACAGACACTC----CTGTGTTTCGGCGCCAG-GAGGGAAGAGATCATTGCAAACTACAGTCATGGAATTTGGTTCATTTAACTGAAAACTTTTTATT-------TTACTT--------------TACCCATCTTAAGTCCTCCTGATAGCCCTGTAAAGTAATAAATTGTCCAAACCCCTTCAGGAAACTATTCTTAATTCCGTCATCATTTA--TAGTTCCCTATCTGTCCAAAAAACCAGAATTTAGCCTTAAAGCTATCACTCTCTTAATCTATATTATGG-TCTTGTCTTTATATATGAGTTGATTTGTTT-TTCAAATTAGTGGATGGCTTTAGGTACCATTTTGTTATTCTGCTTGTTT-GTGTCTTCTGAAGACAGTCACAGCATCATAGAAAACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140201938 445 - 143122389 ACTTCTGTCTCTCGGGTATATTAACAG-AGACAGTGGGGCCTAATTTCTTATGTCCCCTCAGT--TAGCCTTTGTCACAGACACTT----CTGTGTTTTGGGGCCAG-GAGGGAAGAGATCATTGCAAACTACAGTCATGGAATTTGGTTCATTTAACTGAAAACTTTTTATT-------TTACTT--------------TACCCATCTTAAGTCCTCCTGATAGCCCTATAAAGTAATAAATTGTCCAAACCCCTTCAGGAAACTATTCTTAATTCCATCATCATTTA--TAGTTCCCTATCTGTCCAATAAACCAGAATTTAGCCTTAAAGCCATCGCTCTCTTAATCTATATTACGA-TCTTGTCTTTATATATGAGTTGATTTGTTT-TTCAAATTAGTGGATGGCCTTAGGTACCATTTTGTTATTCTGCTTGTTT-GTGTCTTCTGAAGACAGTCACAGCATCGTAGAATACC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16916299 443 - 229590362 ACTTCTGTCTCTCGGGTATATTAACAG-AGACAGTGGGACCTAATTTCTTATGT-CCCTCAGT--TGGCCTTTGTCACAGACACTC----CTGTGTTTGGGGGCCAG-GAGGGAAGAGATCATTGCAAACTTCAACCATGGAATTTGATTCATTTAACTG-AAACTTTTTATT-------TTACTT--------------TACCCATCTTAAGTCCTCCTGATAGCCCTGTAAAGTAATAAATTGTCCAAACCCCTTCAGGAAACTATTCTTAATTCCATCATCATTTA--TAGTTCCCTATCTGTCCAATAAACCAGGATTTAGCCTTAAAGCCATCGCTCTCTTAATCTATATTACGA-TCTTGTCTTTATATATGAGTTGATTTGTTT-TTCACATTAGTGGATGGCCTTAGGTACCATTTTGTTATTCTGCTTGTTT-GTGTTTTCTGAAGACAGTCAGAGCATCATAGAATATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223679564 443 - 227556264 ACTTCTGTCTCTCGGGTATATTAACAG-AGACAGTGGGACCTAATTTCTTATGT-CCCTCAGT--TAGCCTTTGTCACAGACACTC----CTGTGTTTGGGGGCCAG-GAGGGAAGAGATCATTGCAAACTTCAACCATGGAATTTGATTCATTTAACTG-AAACTTTTTATT-------TTACTT--------------TACCCATCTTAAGTCCTCCTGATAGCCCTGTAAAGTAATAAATTGTCCAAACCCCTTCAGGAAACTATTCTTAATTCCATCATCATTTA--TAGTTCCCTATCTGTCCAATAAACCAGGATTTAGCCTTAAAGCCATCGCTCTCTTAATCTATATTACGA-TCTTGTCTTTATATATGAGTTGATTTGTTT-TTCAAATTAGTGGATGGCCTTAGGTACCATTTTGTTATTCTGCTTGTTT-GTGTTTTCTGAAGACAGTCAGAGCATCATAGAATATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16729899 444 - 220367699 ACTTCTGTCTTTCGGGTATATTAACAG-AGACAGTGGGGCCTAATTTCTTATGTCCCCTCAGT--TAGCCTTTGTCACAGACACTC----CTGTGTTTGGGGGCCAG-GAGGGAAGAGATCATTGCAAACTTCAACCATGGAATTTGATTCATTTaactg-aaactttttatt-------ttactt--------------tacccATCTTAAGTCCTCCTGATAGCCCTGTAAAGTAATAAATTGTCCAAACCCCTTCAGGAAACTATTCTTAATTCCATCATCATTTA--TAGTTCCCTATCTGTCCAATAAACCAGGATTTAGCCTTAAAGCCATCGCTCTCTTAATCTATATTACGA-TCTTGTCTTTATATATGAgttgatttgttt-ttcaaattagtGGATGGCCTTAGGTACCATTTTGTTATTCTGcttgttt-gtgttttctgaagACAGTCAGAGCATCATAGAATATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82528166 440 + 85787240 ACTCCTGTCTCTCGGGTGTATTAACAG-AGACAGTGGGGCCTCATTTCTTATGTGCCCTCAGT--TAGCCTTTGTCACAGACACTC----CTGTGTTTGGGGGCCAG-GAGGGAAGAGATCATTGCAAACTTCAGCCATGGAATTTGGTTCATTTAACTG-AAACTTTTTATT-------TTACTT--------------TACCCACCTGAAGTCCTCCTGATAGCCCTGTAAAGTAATAAATTGTCCAAACTCCTTCAGGAAACTATTCTTAATTCCATCATCATTTA--TAGTTCCCTATCTGTTCAATAAGCCAGGATTTAGCCTTAAAGCCATCGCTCTCTTAATCTAGATTACGA-TCTTGTCTTTATATATGAGTTGATTTGTTT-TTCAAATTAGTGGATGGCCTTAGGTACCATTTTGTTATTCTGCTTGTTT-GTGTTTTCTGAAGA----CAGAGAATCATAGAATATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14209295 443 - 49578535 ACTCCCGTCTCTCGTGCATATTAACAG-AGACAGTGGGACCTGGTTTCTTATGTCCCCTCAGT--TAGGCTTTGTCACAGACATGC----CCGTGTTTGGGG--CTG-GGAGGAGGAGGTCATTGCAAAGAATGGCCATGGAATTTGGTTCATTTAACTGAACACTGTTTCTT-------CTGCTT--------------TACCCGTCTGAGGGCCTCCCGATAGACCTGTAAAGTGATAAATTGTCCAAAGCCCTTCAGGAAACTATTCCTAATTCCATCATCATTTA--TAGTTCCCCATCTGTCCAATAAACCAGAATTTAGCCTTAAAGGCATCGCTCTCTTAATCTACATTACGA-TCTTGTCTTTATATATGAGTTGATTTGTTT-TTCAAATTAGTGGAAGCCCTTAAGTACCACGCTGTTATTCTGCTTGTTT-GCGTCTTTTGAAGACAGTCATTGCGTCATAGAATATT i calJac3.chr19 I 301 C 0 s mm10.chr1 178794048 433 + 195471971 ------------------------TAG-ATACA-------CTGACTACTAATGTTCC--AAGT--CTGCCTTTCTCACAAACACTA----CTGTGTGTTGGGCACAGAGAGAAGAGAGATCA--GCAAATTTCAGTCA--AAACTTGGTTCATTTGACTGAAAGCTAtttgtttgtttgcttgcttgtttgtttTAAGGCTATCCATCTCAGATCCTCCTGATAGCCCTATGAACTAATAATTTGTCCAAACTCCTCCTGTAAATGATTCTTAATTCCATCACCATTTG--TAGCTCCCTCTCTGTCCAATGAACCAGAAGTTAGCCTGTAAGGCATCTCTTCTTTAATCTATATTATGGTTTTTATCTTTATATGCAAATTGATCTATTTCCTCAAATTAGTGTATGGTCTTAAGAACCATGTTATTATTTCACTTTTCTGGTGTCTTGTGAGGACAATGAAAACACCAAAGGATGTC i mm10.chr1 C 0 C 0 s canFam3.chr7 36360163 439 + 80974532 ---ACTGTCTCTTAGGCCCA----CAGCAGACAGTGGGGCCTGATTTCTTATGTCCCCCAAGGCACAGCCTTCATCACACACACTACTTGCTGTGTTTTGGAGCTAG-GAAG---GAGATCACTATGAACTGCAACCAAGGAATTCGGTTCATTGAACAGAAAGCTCTTTCGC-------TTGTGT--------------TG-CCATCTTAAATCCTTTTGATAAACCCATAAATTACCATATTGTCCAAG-TCCTCTGGGAAGTCATTCTTAATCCCATCATTATTTATGTAGTTCCCTATCTGTCCAGTAAACCAGAATTTAGCTGTAAAGGCATCTGCTGCTGAATTTCTATTATGA-TCTTGTCTTTATATGTGAGCTGATTTGTTT-TCCCG--TCATGGATGGCCTTAAGTAATGTG-TGTTCTCCTTTTTTTGT-GTGTCGTCTGAGGACAGTGGGAACATCATAGAATGGT i canFam3.chr7 C 0 C 0 a score=2850377.000000 s hg38.chr1_KI270759v1_alt 200901 1003 + 425601 ACAGATTGGAGGGGTCTATGGGATCATCAGAACC----AGTGCTTTT-CAAAAAAATTTTAACTGCAAACTCCCCATTTGAAGTGAAtt----tttgtttgtttgttttgtgacaaagtttcactcttgttgcccaggctggagtgcagtggcacaatctcagcccactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaaccatgtaattacactcggctaaatttttttgtatttattagagattggctttcaccatgttgaccaggctggtcttgaactcctgagctcaggtgatccacccacgtcggcctcccaaggtgctgggattacaggcgtgagccacggtgcccagccTGAAGTGAAATCTTATAAGACCCTCAGTATTGGTCCAGGGAGGGTAGACTTCCTCATACCTC----CCAGGAGGCCCGAGGGCTCCATTGCCTCTAATTTCCTCTAGATGAGAGAACTGACACCTCTAGAGATAAAATTAGCTGCCCAACATTTTGGTGAGGGAGGAAGAGTCCATTTTTGTTGCTTAGAAGCTTCGAAATCAGCAGAGGTCAGTGTATGTGGAGATTGCTGGTAATAAGTCTGGAAACAGAG-----CAGAAGgttgca-ggttggaacctggcttccctggaagccaacactcaggtggagctgggcatgcaggatgtttactggaaatccac------------------------------------------------acccgtagaaaccaggaggatgcaggattgtaccaaggaaaaagtcaaactgccacacaggccaa-----caaagccttggccagccccacagggaagcgctggagcataaatggcccatcctcgtgtcctgtgttgga---cttgatggctg--ggcctttataccctcactgctat-----------------------cagtctttggatgtgaaccaccttgggaagggcaggcccttggccttctgcagcattctgtggctttcttcagtggaagcaaatcctgaagaagctgtcagctggaagccaattgccc s panTro4.chr1 224954530 1007 + 228333871 acagatgggaggggtctatgggatcatcAGAACC----AGTGCTTTT-CAAAGAAATTTTAACTGCAAACTCCCCATTTGAAGTGAAtttttgtttgtttgtttgttttgtgacgaagtttcactcttgttgcccaggctggagtgcagtggcacaatctcagcccactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacagccatgtaattacactcggctaattttttttgtatttagtagagattggctttcaccatgttgaccaggctggtcttgaactcctgacctcaggtgatccacacacttcggcctcccaaggtgctgggattacaggcatgagccacggtgcccagccTGAAGTGAAATCTTCTAAGACCCTCAGTATTGGTCCAGGGAGGGTAGACTTCCTCATACCTC----CCAGGAGGCCCAAGGGCTCCATTGcctctcatttcctctagatgagagaactgacacctctagagataaaattagctgcccaaCATTTTGGCGAGGGAGGAAGAGTCCATTTTTGTTGCTTAGAAGCTTCGAAATTAGCAGAGATCAGTGTACGTGGAGATTGCTGGTAATAAGTCTGGAAACAGAG-----CAGAAGAttgca-ggttggaacctggcttccctggaagccaacactcaggtggagctgggcatgcaggatgtttactggaaatccac------------------------------------------------acccgtagaaaccaggaggatgcaggattgtaccgaagaaaaagtcaaactgccacacaggctaa-----caaagccttggccagccccacagggaagcgctggagcataaatggcccatccttgtgtcctgcgttgga---cttgatggctg--ggcctttataccctcactgctat-----------------------cagtctttggatgtgaaccaccctgggaagggcaggcccttggccttctgcagcattctgtggctttcttcagtggaagcaaatcctgaagaagctgtcagctggaagccaattgccc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226312434 1007 - 229942017 ACAGATGGGAGGGGTCTATGGGATCATCAGAAGC----AATGCTTTTAAAAAAAAATTTTAACTGCAAACTCCCCATTGGAAGTGAAtttttgtttgtttgtttgttttgtgatgaagtttcactcttgttgcccaggctggagtgcaatggcacaatctcagctcactgcaacctccacctcctgggttcaagcagttcccctgcctcagcctcccgagtagctgggattacaggcatgtaattacacctggctaatttttttggtatttagtagagatcggctttcaccatgttgaccaggctggtcttgaactcctgacctcaggtgatccacctacgtcggcctcccaaggtgctgggattgcaggcgtgagccacggtgcccagccTGAAGTGAAATCTTATAAGACCCTCAGTATTGGTCCGGGGAGGGTAGACTTCCTCATACCTC----CCAGGAGGCCCGAGGGCTCCATTGcctctaatttcctctagatgagagaactgagacctctagagataaaattagctgcccaaCATTTTGGCGAGGGAGGAAGAGTCCATTTTTGTTGCTTAGAAGCTTCGAAATTAGCAGAGGTCAGTGTATGTGGAGATTGCTGGTAATAAGTCTGGAAACAGAG-----CAGAAGgttgca-ggttggaacctggcttccctggaagccaacactcaggtggagctgtgcgtgcaggatgtttactggaaatccac------------------------------------------------acccgtagaaaccaggaggatgcaggattgtaccgaggaaaatgtcaaactgccaaacaggctaa-----caaagccttggccagccccacagggaagcgctggagcataaatggcccatccttgtgtcctgcgttgga---cttgctggctg--ggcctttataccctca-tgccat-----------------------cagtctttggatgtgaaccaccttgggaaggccaggcccttggccttctgcagcattctgtggctttctccagtggaagcaaatcctgaaggagctgtcagctggaagccacttgccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140202383 995 - 143122389 ACAGATGGGAGGGGTATGTGGGATCATCAGAACC----AGTGCTTTT-CAAAAAAATTTTAACTGCAAACTCCCCATTTGAAGTGAAtt----tttgtttgtttgttttgtgacaaagtttcactcttgttgcccaggctggagtgcagtggcacaatctcagctcactgcaacctccacctcctgggctcaagcaattctccatcctcagcctcccaagtagctgggattacaggcacgtaattacagtcggctaattttttttgtatttagtagagattggctttcaccatgttgaccaggctggtcttgaactcctgacctcaggtgatccacccacatcggcctcccaaggtgctgggattacaggcgtgagccacggtgcccagACTGAAGTGAAATCTTGTAAGACCCTCAGTATTGGTCTGGGGAGAGTTGACTTCCTCATACCTC----CCAGGAGGCCCGAGGGCTCCATTGcctctaatttcctctagatgagagaactgagacctctagagataaaattagctgcccaaCATTTTGGCGAGGGAGGAAGAGTCCATTTTTGTTGCTTAGAAGCTTCAAAATTAGCAGAGGTCAGTGTATGTGGAGATTGCTGGTAATAAGTCTGGAAACAGAG-----CAGAAGgttgca-ggttggg-------ttccctggaagccagcactcaggtggagctgggcgtgcaggatgtttactggaaatacac------------------------------------------------acgtgtagaaaccaggaggatgcaggattgtgccgaggaaaaagtcaaactgccaaacaggctaa-----caaagccttggccagccccacagggaagcgctggagcataaatggcccatccttgtgtcctgcgttgga---cttgatggctg--ggactttataccctcactgccat-----------------------cagtc-ttgcatgtgaaccacctcgggaaggccaggcccttggctttctgcagcattctgtggctttcttcagtggaagcaaatcctgaaggagctgtcagctggaagccgattgccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16916742 1016 - 229590362 ACAGA-GGGAGGGGTCTATGGGATCATCAGAACC----AGTGCTTTT-CCAAAATATTTTAATTGCAAACCCCTTATTTGAAGTGAAtt----tt--tttgtttgttttgagacgaaatttccctcttgttgcccaggctggagtgcaatggcacaatctcggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcctgtaattacacttggctaattttttttgtatttagtagagatggggtttcaccatgttgaccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctcctaaggtgctgggattacaggtgtgagccaccgtgcccagccTGAAGTGAAATCTTGCGAGACCGTCAGTACTGGTCGGGGGAGGGTTGACTTCCTTATACCTC----CCaggaggcccgagagctccattgcctctaattccctctagatgagagaactgagacctctagagataaaattagctgcccaaCATTTTGGCGAGGGAAGAAGAGTCCATTTTTGTTGCTAAGAAGCTTTGAAATTAGCAGAGGTTCACGTATATGGAGATTGCTGGTAGTAAGTCTGGAAACAGAG-----CCGAAGAttgca-ggttggg-------ttccctggaagccagcactcaggtggagctgggcatgcaggatgtttactggaaatccac------------------------------------------------acctgtagaaaccaggaggacgcaggattgtgccgaggaaaaagtcaaaccgccaaacaggctaa-----caaagccttggccagccccacagggaagcgctggagcgtaaatggcctgtgcttgtgtcatgcgctgga---cttgatggctg--ggcctttataccctcactgccctccaaagactgctttacacactcacagtctttggatgtgaaccactgtgggaaggccaggccctgggccttctgcagccctctgtggctttcttcagtggaagcaaatcctgaaggagctgtcagctagaggccaactgccc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223680007 1016 - 227556264 ACAGA-GGGAGGGGTCTATGGGATCATCAGAACC----AGTGCTTTT-CCAAAATATTTTAATTGCAAACCCCTTATTTGAAGTGAAtt----tt--tttgtttgttttgagacgaaatttccctcttgttgcccaggctggagtgcaatggcacaatctcggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcctgtaattacacttggctaattttttttgtatttagtagagatggggtttcaccatgttgaccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctcctaaggtgctgggattacaggtgtgagccaccgtgcccagccTGAAGTGAAATCTTGCGAGACCGTCAGTACTGGTCGGGGGAGGGTTGACTTCCTTATACCTC----CCAGGAGGCCCGAGAGCTCCATTGCCTCTAATTCCCTCTAGATGAGAGAACTGAGACCTCTAGAGATAAAATTAGCTGCCCAACATTTTGGCGAGGGAAGAAGAGTCCATTTTTGTTGCTAAGAAGCTTTGAAATTAGCAGAGGTTCACGTATATGGAGATTGCTGGTAGTAAGTCTGGAAACAGAG-----CCGAAGAttgca-ggttggg-------ttccctggaagccagcactcaggtggagctgggcatgcaggatgtttactggaaatccac------------------------------------------------acctgtagaaaccaggaggacgcaggattgtgccgaggaaaaagtcaaaccgccaaacaggctaa-----caaagccttggccagccccacagggaagcgctggagcgtaaatggcctgtgcttgtgtcatgcgctgga---cttgatggctg--ggcctttataccctcactgccctccaaagactgctttacacactcacagtctttggatgtgaaccactgtgggaaggccaggccctgggccttctgcagccctctgtggctttcttcagtggaagcaaatcctgaaggagctgtcagctagaggccaactgccc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16730343 1016 - 220367699 ACAGA-GGGAGGGGTCTATGGGATCATCAGAACC----AGtgctttt-ccaaaatattttaattgcaaaCCCCTTATTTGaagtgaatt----tt--tttgtttgttttgagacgaaatttccctgttgttgcccaggctggagtgcaatggcacaatctcagctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcctgtaattacacttggctaattttttttgtatttagtagagatggggtttcaccatgttgaccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctcctaaggtgctgggattacaggtgtgagccaccgtgcccagcctgaagtgaAATCTTACGAGACCCTCAGTACTGGTCAGGGGAGGGTTGACTTCCTTATACCTC----CCAGGAGGCCCGAGAGCTCCATTGCCTCTAATTCCCTCTAGATGAGAGAACTGAGACCTCTAGAGATAAAATTAGCTGCCCAACATTTTGGTGAGGGAAGAAGAGTCCATTTTTGTTGCTAAGAAGCTTTGAAATTAGCAGAGGTTTACGTATGTGGAGATTGCTGGTAGTAAGTCTGGAAACAGAG-----CAGAAGATTGCA-GGTTGGG-------TTCCCTGGAAGCCAGCACTCAGGTGGAGCTGGGCATGCAGGATGTTTACTGGAAATCCAC------------------------------------------------ACCTGTAGAAACCAGGAGGATGTAGGATCGTGCCGAGGAAAAAGTCAAACCGCCAAACAGGCTAA-----CAAAGCCTTGGCCAGCCCCACAGGGAAGTGCTGGAGCGTAAATGGCCTGTGCTTGTGTCATGCGCTGGA---CTTGATGGCTG--GGCCTTTATACCCTCACTGCCCTCCAAAGACTGCTTTACATGCTCACAGTCTTTGGATGTGAACCACTGTGGGAAGGCCAGGCCCTGGGCCTTCTGCAGCCCTCTGTGGCTTTCTTCAGTGGAAGCAAATCCTGAAGGAGCTGTCAGCTAGAGGCCAACTGCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82528606 1016 + 85787240 ACAGA-GGGAGGGGTCTATGGGATCATCAGAACC----AGTGCTTTT-CCAAAATATTTTAATTGCAAACTCCTTATTTGAAGTGAAtt----tt--tttgtttgttttgagatgaaatttccctgttgttgcccaggctggagtgcaatggcacaatctcagctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcctgtaattacacttggctaattttttttgtgtttagtagagatggggtttcaccacgttgaccaggctggtcttgaactcctgacctcaggtgatccacccaccttggcctcctaaggtgctgggattacaggtgtgagccaccgtgcccagccTGAAGTGAAATCTTATGAGACCCTCAGTACTGGTTGGGGGAGGGTTGACTTCCTCATACCTC----CCAGGAGGCCCGAGAGCTCCATTGcctctaatttcctctagatgagagaactgagacctctagagataaaattagctgcccaaCATTTTGGCGAGGGAAGAAGAGTCCATTTTTGTTGCTAAGAAGCTTTGAAATTAGCAGAGGTTTACGCATGTGGAGATGGCTGGTAGTAAGTCTGGAAACAGAG-----CTGAAGAttgca-ggttggg-------ttccctggaagccagcactcaggtggagctgggcatgcaggatgtttactggaaatccac------------------------------------------------acctgtagaaaccaggaggatgcaggattgtgccgaggaaaaagtcaaaccgccaaacaggctaa-----caaagccttggccagccccacagggaagtgctggagcgtaaatggcctgtgcttgtgtcatgcgctgga---cttgatggctg--ggcctttataccctcactgccatccgaagactgctttacacactcacagtctttggatgtgaaccactgtgggaaggccaggccctgggccttctgcagcgctctgtggctttcttcagtggaagcaaatcctgaaggagctgtcagctagaggccaactgccc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14209738 1009 - 49578535 ACAGA-------------TGGGATCATCAGGACCAGTGAGTGCTCTT-CAGAAAAATTATAACTGCAAACTCTCCATTTGAAGTGAAtt----tt------ttttttttgagatgaagttttgcccttgtcgcccaggctggagtgctgtggcagaatctcagctcactgcaacctctacctcctgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcatgtaa---------------tttttgtgtctttagtagagaccgg-tttcaccatgttggtcaggctggtcttgaactcctgacctcaggtgatccacttgcctcag-ttcccaaagcgctgggattacaggcgtgagccaccgttcccggccTAAAGTGAAACGTTACATGACCCTTAGCACTGGTTGGGAGAGGGTTGACTTCCTCATCCCTC----CCAGGAGGCTCGAGGCCTCCATTGcctctaatttcctctagataagagaactgaggcctctagaaataaaattatctgcccaaCATTTTGGCGAGGGAGAAAGAGTCCATTTTTGTTGCCTAGAAGCTTTGAAATTAGCAGAGGCTGACATCTGCGGACATTGCTGGTAGTAAGTCTGGAAACAGGG-----CAGAAGATGGCA-GG-CGGG-------TTTTCTGGAAGCCAGCATTCGGGTGGAGCTGGGCGTGCATGGTGTTTACTGCAGACAGACAGAGCCTCATAGACTATTACAGACGGAAGGGTCGGTGGGGTCatcagaacctgtggaaa--gagaggatgcaggattgtgcctaggagaaagtcaaactgccagacagaccga-----cgacaccttggccagcctcgcggggaagctctggagcgtaaatggctcgtcattgtgtcctgcattgga---cttgatggctg--ggcctctacaccctcactgccat-----------------------cagcctttggatgtgaagcaccctaggaaggccaggcccttggccttctgcagtattctatggctttatgcagttgacgcaaatcctgaaggagctgtcagctggaagcccattgccc i calJac3.chr19 C 0 C 0 s mm10.chr1 178794481 645 + 195471971 ACAAATGGGAGACAGCTATGGGGACACCAGAACC----AGTGCCTTT-AAAAATAAACAACAGTGTG-------CATGTCAAATAAAAT----CT----------------TACAAGATTT--------------------------------------------------------------------------------------TCAACATACCAACT--------------------------------------------------------------------CCATAACAGTAAGGTTACTCTT----------------------------------------------------TTA--------------------------GAAATGGGACCACATGGGA-----------------GGGAGGAT-GAGTTCCAGGTCCCTCACCTCCAGAAGGCCCT-GGTTTCAGTGGCCTCTGATTTCTACTGGATGAGA-----GAGGCATTTGGAGATAAGATCAGTGGCTCGGCATTTTGATGAGGAGGGAAGCATCCATTTTCATGGCTTTGACACTTTGGTCTCACCAGAGATTAGACACCACTAAGGTTCCT-----TAATCCCATGAATGGGGACTGTCTGGAGTTTGCATGGCCCAG-------TACCTTAGCTGCTGACTTTTTTGT-----------TCAAGACTCTTTAGCAGCAATTTCC------------------------------------------------A------------------------GTTTCCAC-----------TCACACCTCTGGTGAGACCAAAGTGTCAAAGCCATGA----------------------------AAATGG---ATCCTTCCGTCCT-CGTCAAAATGCTGGATGGCTGCTGGCTCTTCTCTTGCCATTGTCAC-----------------------TGGTCCTAGTGTAAGGGTCACT-CGGGGAGGCCAGTTC--------TTTACTACTTTCTgtggttttcttcacatgaagcaaattttaaaaaggctgagagtagaaggctggctgccc i mm10.chr1 C 0 C 0 e canFam3.chr7 36360602 0 + 80974532 C a score=733420.000000 s hg38.chr1_KI270759v1_alt 201904 216 + 425601 a-cagctggggcaacaagtc--ctcccttgaagcaagatctagaaggcacatctccatgtccCCTCCACATGGC-C-CCAGGATTGCTGGTGAACATGAGAGACAGTGGAGAGGAGAGTCCCG--GGAGGCAGCCTTCCCA-------GCCAGGCCACCCCAAACTTCTGG---------TTAGGGATTCCCAGCTTCACAGCACTACGTAAGCTGCTTGCCAA-CAGATGTTTTGACAA s panTro4.chr1 224955537 216 + 228333871 a-cagctggggcaacaagtc--ctcccttgaagcaagatctagaaggcacatctccatgtccCCTCCACATGGC-C-CCAGGATTGCTGGTGAACATGAGAGACAGTGGAGAGGAGAGTCCCG--GGAGGCAGCCTTCCCA-------GCCAGGCCACCCCAAACTTCTGG---------TTAGGGATTCCCAGCTTCACAGCACTACGTAAGCTGCTTGCCAA-CAGATGTTTTGACAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226313441 209 - 229942017 a-cagctggggcaacaagtc--ctcccttgaagcaagatctagaaggcacatctccatgtccCCTCCACATGGC-C-CCAGGATTGCTGGTGAACACGAGAGACAGTGGAGAGGGGAGTCCTG--GGAGGCAGCCTTCCCA-------GCCAGGCCACCCCAAACTTCTGG---------TTAGGGATTCCCAGCCTCACAGCACTATGTATGCTGCTTGCCAA-CAGATGTT------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140203378 216 - 143122389 a-cagctggggcaacaagcc--ctccctcgaagcaagatctagaaggcacatctccatgtccCCTCCACATGGC-C-CCAGGATTGCTGGTGAACATGAGAGACAGTGGAGAGGAGAGTCCCG--GGGGGCAGGCTTCCCA-------GCCAGGCCATCCCAAACTTCTGG---------TTAGGGATTCCCAGCTTCACAGCACTACGTATGCTTCCTGCCAA-CGGATGTTTTGACAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16917758 213 - 229590362 a-cagccggggcaacaagtc--ctcccttgaagcaagatctagaaggcacatctccatgtccCCTCCACGTGAC-C-CCGGGATCGT---TGAACACGAGAGACAGTGGAGAGGAGAGTCCTG--GGGGGCAGCCTTCCCA-------GCCAGGCCACCCCAAACTTCTGG---------TTAGGGATTCCCAGCTTCACAGCACTACGCATGCTGCTTGCCAA-CCGACGTTTGGACAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223681023 213 - 227556264 a-cagccggggcaacaagtc--ctcccttgaagcaagatctagaaggcacatctccatgtccCCTCCACGTGAC-C-CCGGGATCGT---TGAACACGAGAGACAGTGGAGAGGAGAGTCCTG--GGGGGCAGCCTTCCCA-------GCCAGGCCACCCCAAACTTCTGG---------TTAGGGATTCCCAGCTTCACAGCACTACGCATGCTGCTTGCCAA-CCGATGTTTGGACAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16731359 213 - 220367699 A-CAGCCGGGGCAACAAGTC--CTCCCTTGAAGTGAGATCTAGAAGGCACATCTCCATGTCCCCTCCACGTGAC-C-CTGGGATCGT---TGAACACGAGAGACAGTGGAGAGGAGAGTCCCG--GGGGGCAGCCTTCCCA-------GCCAGGCCACCCCAAACTTCTGG---------TTAGGGATTCCCAGCTTCACAGCACTACGCATGCTGCTTGCCAA-CCGATGTTTGGACAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82529622 212 + 85787240 a-cagccggggcaacaagtc--ctcccttgaagcaagatctagaaggcacatctccatgtcccctgcaCATGAC-C-CCGGG-TCGT---TGAACATGAGAGACAGTGGAGAGGAGAGTCCCG--GGGGGCAGCCTTCCCA-------GCCAGGCCACCCCAAACTTCTGG---------TTAGGGATTCCCAGCTTCACAGCACTACGCATGCTGCTTGCCAA-CCGATGTTTGGACAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14210747 215 - 49578535 a-cagctggggcaacaagtc--ctcccttggagcaagatctacgaggcacatctccgtgtccCCTCCACGCAGC-T-CTGGGAGTGCTGGTGAATACGAGAGACCGTGGAGAGGGGAGTGCCG--GG-GGCAGCCTTCCCA-------GCCAGGCCACCCCAAGCTTCTGG---------TTAGGGATTCCCAGCTTCACAGCACTACGCATGCTACTTGCCAA-CAGATATTTTGACAA i calJac3.chr19 C 0 I 5 s mm10.chr1 178795126 207 + 195471971 agcagc--gggcaacaaatcctctctcttgaagacagatccggaagg-aca-ctgcacgtccacTGTGTGTGGCTC-CTTGGAGTCCTGGTGCCCACAGGAGA--GTGGAGAG------CGCT--GGTGGCA------TCT-------GATGGTCCAGTCCTTACTTCTAGAGATAGGAAGTGGAGATTCCTAGTTCCAAGCTTCTGAG-ATGTTCCTTGCTCA----GTGTTTTGATAA i mm10.chr1 C 0 C 0 s canFam3.chr7 36360602 217 + 80974532 A-CAGCGGAGGCATCAAGAT--TGCGCTTAAAGAAGGATCTAGAAGGCACACCTTCGTGTCCATTACACATGGC-CACTAGAAATTCTGGTGAACACG---------GGAGAGAGAAATTCTGGTGGCGGCAGCTTTCCCAGCTATCTGCCAGACCACCACAAACTTCTTG---------TT-GGGATCCCCAGCTCAAAAGTGCTGAGGATGATGTTTGCTAAGCAAATGTGTTGACAA i canFam3.chr7 C 0 C 0 a score=-21009.000000 s hg38.chr1_KI270759v1_alt 202120 29 + 425601 CATCTG-TTGTCAAAGGTTGACAACAACCT s panTro4.chr1 224955753 29 + 228333871 CATCTG-TTGTCAAAGGTTGACAACAACCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226313650 13 - 229942017 -----------------TTGAGAACAACCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140203594 30 - 143122389 CATCTGTTTGTCAAAGGTTGACAACAACCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16917971 5 - 229590362 ----------------GTAGG--------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223681236 5 - 227556264 ----------------GTAGG--------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16731572 5 - 220367699 ----------------GTAGG--------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82529834 5 + 85787240 ----------------GTAGG--------- i chlSab2.chr25 C 0 C 0 s mm10.chr1 178795333 9 + 195471971 ----------------GTAGA--ACAA--- i mm10.chr1 C 0 C 0 s canFam3.chr7 36360819 7 + 80974532 -----------------------ACAGACC i canFam3.chr7 C 0 C 0 e calJac3.chr19 14210962 5 - 49578535 I a score=531289.000000 s hg38.chr1_KI270759v1_alt 202149 162 + 425601 TTGGTCCTTGCGATGGCTTTCTC-CTGTGTTTCAAGATGGATTCCTATTGGCATCTTTCATTTCCACCTCTGTTTCACCAAGTTTAGTGACCATTTTCA--TACATTGGGGCTTaatgtggtgcagtggaaagtgtagcagattgaatgtggaag----------------------------------------------------------------------------------atcgggttcc s panTro4.chr1 224955782 162 + 228333871 TTGGTCCTTGCGATGGCTTTCTC-CTGTGTTTCAAGATGGATTCCTGTTGGCATCTTTCATTTCCACCTCTGTTTCACCAAGTTTAGTGACCATTTTCA--TACATTGGGGCTTaatgtggtgcagtggaaagtgtagcagattgaatgtggaag----------------------------------------------------------------------------------atcaggttcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226313663 162 - 229942017 TTGGTCCTTGCGATGGCTTTCTC-CTGTGTTTCAAGATGGATTCCTGTTGGCATCTTTCATTTCCACCTCTGTTTCACCAAGTTTAGTGACCATTTTCA--TACACTGGGGCTTaatgtggtgcagtggaaagtgtagcagattgaatgtgggag----------------------------------------------------------------------------------atcgggttcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140203624 162 - 143122389 TTGGTCCTTGTGATGGCTTTCTC-CCGTGTTTCAAGATGGATTCCTGTTGGCATCTTTCATTTCCACCTCTGTCTCACCAAGTTTAGTGACCATTTTCA--TACACTGGGGCTTaatgtggtgcaggggaaagtgtggcagattgaatgtggaag----------------------------------------------------------------------------------atcgggttcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16917976 162 - 229590362 TTGTTCCTTGAGATGGCTTTCTC-TTGTGTTTCAAGATGGATTCCTGTTGGTATCTTTCATTTCCACCTCTGTTTCACCAAGTTTAGTGACCATTTTCA--TACGCTGGGGCTTaatgcggtgcggtggaaagtgtagcagattgaatgtggaag----------------------------------------------------------------------------------atcgggttcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223681241 162 - 227556264 TTGTTCCTTGAGATGGCTTTCTC-TTGTGTTTCAAGATGGATTCCTGTTGGTATCTTTCATTTCCACCTCTGTTTCACCAAGTTTAGTGACCATTTTCA--TACGCTGGGGCTTaatgcggtgcggtggaaagtgtagcagattgaatgtggaag----------------------------------------------------------------------------------atcgggttcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16731577 162 - 220367699 TTGTTCCTTGAGATGGCTTTCTC-TTGTGTTTCAAGATGGATTCCTGTTGGTATCCTTCATTTCCACCGTTGTTTCACCAAGTTTAGTGACCATTTTCA--TACGCCGGGGCTTAATGCGGTGCGGTGGAAAGTGTAGCAGATTGAATGTGGAAG----------------------------------------------------------------------------------ATCGGGTTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82529839 162 + 85787240 TTGTTCCTTGAGATGGCTTTCTC-TTGTGTTTCAAGATGGATTCCTGTTGGTATCTTTCATTTCCACCTCTGTTTCACCAAGTTTAGTGGCCATTTTCA--TACGCTGGGGCTTaatgcggtgcggtggaaagtggagcagattgaatgtggaag----------------------------------------------------------------------------------atcgggttcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14210967 143 - 49578535 TTGGCCCTGGAGATGGCTTTCTG-CTGTG-------------------TGGCATCTTGTATTTCCACCTCTGTTTCACCAAGTCTGGTGACCATTTTCG--TACACTGGGGCTTCAtgtggtgcactggaaagtgcagcggatcgaatgtggaag----------------------------------------------------------------------------------actgggttcc i calJac3.chr19 I 5 C 0 s mm10.chr1 178795342 135 + 195471971 -------------------------TGTGCTTCCAGA-GAAATTCTGTCAGTAGCGTCCATGTC--CTTCTGTTTCACCAGGCTAAGCAGCCATTTTTA--TATTTAAGGTCTACATTTGGTTCAGTAGACAATGTGGCACACTGAAGGAGGAAA----------------------------------------------------------------------------------ACTGGGCTCC i mm10.chr1 C 0 C 0 s canFam3.chr7 36360826 239 + 80974532 --AGACCTTAACTTAGCTTCTTCTTTGTGTTTCAAGGTAGAATCCTGTGGG------TCGTCTTCATTTCATTTTCACCAAGTTTAAGGACCATTTTCACCTGTTTTGGGGCTTAATTTGGTACAGAGTGAAATACAGTGGCTTATGTGTAGAAggatttggattctatggggcacctggtggcttagttggtttagcatctgtcattggctcaggtgtcctgggatcgagtcctgcatcaggctcc i canFam3.chr7 C 0 I 113 a score=220358.000000 s hg38.chr1_KI270759v1_alt 202311 64 + 425601 agatctcgttcaggaagttagtagctgtgtgaccaagagcaagtcgttcagcttttctgagcca s panTro4.chr1 224955944 64 + 228333871 agatctcgttcaggaagttagtagctgtgtgaccaagagcaagtcgttcagcttttctgagcca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226313825 64 - 229942017 agatatcattcaggaagttagtagctgtgtgaccaagagcaagtcgttcagcttttctgagcca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140203786 64 - 143122389 agatctcgttcaggaagtgagtagctgtgtgatcaagagcaagttgttcagcttttctgagtca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918138 64 - 229590362 agatctcgtccaggaagttagtagctgtgtgaccaagagcaagtcattcagcttttctgaAACA i rheMac3.chr1 C 0 I 16 s macFas5.chr1 223681403 64 - 227556264 agatctcgtccaggaagttagtagctgtgtgaccaagagcaagtcattcagcttttctgaAACA i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16731739 64 - 220367699 AGATCTCGTCCAGGAAGTTGGTAGCTGTGTGACCAAGAGCAAGTCATTCAGCTTTTCTGAAACA i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82530001 64 + 85787240 agatctcgtccaggaagttagtagctgtgtgaccaagagcaagtcattcagcttttctgaAACA i chlSab2.chr25 C 0 I 16 s calJac3.chr19 14211110 64 - 49578535 agatcttgttccggaagttacgagctgtgtgacctacagcaagtcactctgctcttctgagcca i calJac3.chr19 C 0 C 0 s mm10.chr1 178795477 55 + 195471971 AGATCCCATTGCCGA---------CTATAGGACCATGAACAAAAATGCTGACTCTCCTGGATCA i mm10.chr1 C 0 C 0 s canFam3.chr7 36361178 64 + 80974532 agatcttgttctggaatgtattagctgtgtgaccaataacaagtgattttacttttcagagcTC i canFam3.chr7 I 113 C 0 a score=18693.000000 s hg38.chr1_KI270759v1_alt 202375 17 + 425601 tgattcctcaggtgtaC s panTro4.chr1 224956008 17 + 228333871 tgattcctcaggtgtaC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226313889 17 - 229942017 tgattcctcaggtgtac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140203850 17 - 143122389 tgattccccaggtgtaC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223681468 13 - 227556264 TGAG----CAAGTGTTT i macFas5.chr1 I 1 I 2 s papAnu2.chr1 16731804 13 - 220367699 TGAG----CAAGTGTTT i papAnu2.chr1 I 1 I 2 s calJac3.chr19 14211174 17 - 49578535 tgcttccgcaggtgtaC i calJac3.chr19 C 0 C 0 s mm10.chr1 178795532 17 + 195471971 TAGCCCGTCAGTGGTCC i mm10.chr1 C 0 I 2 s canFam3.chr7 36361242 17 + 80974532 TGATTCTACAGTTATTC i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16918202 16 - 229590362 I e chlSab2.chr25 82530065 16 + 85787240 I a score=419062.000000 s hg38.chr1_KI270759v1_alt 202392 148 + 425601 ------------ACACCAAGTGAT-------GAAACACTTTAAAAACTAAGAAAACAGTGTTTGAAATGCCCCTCAAGT-GCTGGTGTTTCCCCAAGGATGTTCTAGACCCTTCACcat--------------------tccattcat---tcattcattcattcatctattcGATGATTAGTGTGATCCC s panTro4.chr1 224956025 152 + 228333871 ------------ACACCAAGTGAT-------GAAACACTTTAAAAACTAAGAAAACAGTATTTGAAATGCCCCTCAAGT-GCTGGTGTTTCCCCAAAGATGTTCTAGAGCCTTCACCAT----------------TCcatccattcat---tcattcattcattcatCTGTTCGATGATTAGTGTGATCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226313906 140 - 229942017 ------------acaccaagtgat-------gaaacactttaaaaactatgaaaacagTATTTGAAATGCCCCTCAAGT-GCTGGTGTTTCCCCAAGGATGTTCTAGACCCTTCACCAT----------------------------T---CCATTCATTCATTCATCTATTCGATGATTAGTGTGATCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140203867 147 - 143122389 ------------ACATCAAGTGAT-------GAAACACTTTAAAAACTATGAAAACGGTGTTTGAAATGCCCCTCAAGT-GCTGGT-TTTCCCCAAGGATGTTCTAAACCCTTCACCGT--------------------TCcattcat---tcattcattcattcatctattcGATGATTAGTGTGATCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918218 152 - 229590362 ------------ACACCAAGTGAT-------GAAACACTTTAAAAACTATGAAAACAGTATTTGAAATGCCCCTCAAAT-GCTGGTGTTTCCCCAAGGATGTTCCAGACCCTTCGCCAT----------------ttcattcattcat---tcattcattcattcatctattcaATGATTAGTGTGATGCC i rheMac3.chr1 I 16 C 0 s macFas5.chr1 223681483 168 - 227556264 ------------ACACCAAGTGAT-------GAAACACTTTAAAAACTATGAAAACAGTATTTGAAATGCCCCTCAAAT-GCTGGTGTTTCCCCAAGGATGTTCCAGACCCTTCGCCATttcattcattcattcattcattcattcat---tcattcattcattcatCTATTCAATGATTAGTGTGATGCC i macFas5.chr1 I 2 C 0 s papAnu2.chr1 16731819 164 - 220367699 ------------ACACCAAGTGAT-------GAAACActttaaaaactatgaaaacagTATTTGAAATGCCCCTCAAAT-GCTGGTGTTTCCCCAAGGATGTTCCAGACCCTTCgccat----ttcattcattcattcattcattcat---tcattcattcgttcatctattcaATGATTAGTGTGATGCC i papAnu2.chr1 I 2 C 0 s chlSab2.chr25 82530081 168 + 85787240 ------------ACACCAAGTGAT-------GAAACACTTTAAAAACTATGAAAACAGTATTTGAAATGCCCCTCAAAT-GCTGGTGTTTCCCCAAGGATGTTCCAGACCCTTCGCCATttcattcattcattcattcattcattcat---tcattcattcattcatCTATTCAATGATTAGTGTGATGCC i chlSab2.chr25 I 16 C 0 s calJac3.chr19 14211191 140 - 49578535 ------------ATACCAAG---T-------GAGACGCTTTAAAAACCAGTAAAACAGTATGGAAAATGCCCCTCAAAT-GGTGGTGTTTCCCCAAGGCTGTTCTAGACCCTTTACCAT------------------------TTCAT---TAATCCGTTCATTCATCTATTCAATGATTCCTGTGG-CCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178795551 114 + 195471971 ------------GTTCCAGTTGATACCAACAGGAATAGTTTATAAACTAT-AAAAGAGTGTTTAAAGTCTCTTTC----------------------------------CCTTCACTAC--------------------TCCATAGAG---TTATTTGCTCGGTTAT-TAT------ATTAATGTGTTTTC i mm10.chr1 I 2 C 0 s canFam3.chr7 36361259 159 + 80974532 ATGGAGGGCTCAATACCAC---AT-------GAAACACTTTAGAAACTAT-AAAACAGTACTTAAAATGCCTTTTAGATAGATAATGGGT-------GTTGTTCTGGACTCTCTTCCTT----------TAGCACCccttccatccatctgtcctccattcatctatctatccCAttttttaaaaaa---- i canFam3.chr7 C 0 C 0 a score=26643.000000 s hg38.chr1_KI270759v1_alt 202540 18 + 425601 TAACtttt--ttattgttg--------------------t s panTro4.chr1 224956177 18 + 228333871 TAACtttt--ttattgttg--------------------t i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314046 18 - 229942017 TAACtttt--ttattgttg--------------------t i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204014 20 - 143122389 TAACtttttgttgttgttg--------------------t i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918370 21 - 229590362 TAACtttt--ttgttgtgg-----------------tttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223681651 21 - 227556264 TAACtttt--ttgttgtgg-----------------tttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16731983 21 - 220367699 TAactttt--ttgttgtgg-----------------tttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82530249 21 + 85787240 TAACtttt--ttgttgtgg-----------------tttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14211331 38 - 49578535 TGACTTTT--AATCTGTAATTCCTCTAAAtttcttttttt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36361418 17 + 80974532 -gacttat--ttattttag-----------------a--- i canFam3.chr7 C 0 I 122 e mm10.chr1 178795665 0 + 195471971 C a score=388872.000000 s hg38.chr1_KI270759v1_alt 202558 141 + 425601 tgttgagacggagtctcgctc-tgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcctgggttcacaccattctcctgcctcagcct--cccaagtagctgtgactactggcgcccgccacc s panTro4.chr1 224956195 141 + 228333871 tgttgagacggagtctcgctc-tgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcctgggttcacaccattctcctgcctcagcct--cccaagtagctgtgactactggcgcctgccacc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314064 141 - 229942017 tgttgagacggagtctctctc-tgttgcccaggctggagtgcagtggcacgatctcggctcactgccagctccgcctcctgggttcacgccattctcctgcctcagcct--cccaagtagctgggactacaggcgccctccacc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204034 143 - 143122389 tgttgagacggagtctcgctc-tgtcgcccaggctggagtgcagtggtgcgatctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccccgaggagcagggattactggtgcctgccacc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918391 140 - 229590362 ttttgagatggagtcttgctc-tgtcccccaggctggagtgtagtggcacgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcct--cccaagcagctgggactacaggcg-ccgccacc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223681672 140 - 227556264 ttttgagatggagtcttgctc-tgtcccccaggctggagtgtagtggcacgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcct--cccaagcagctgggactacaggcg-ccgccacc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16732004 126 - 220367699 ttttgagatggagtctcgctc-tgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcct--cccgagtagctggta---------------acc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82530270 141 + 85787240 ttttgagacggagtctcgctc-tgtcacccaggctggagtgcagtggtgcgatctcggctcactgcaagctccgcctcccgggttcaagccattctcctgcctcagcct--cccaagcagctgggactacaggcgcccgccacc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14211369 142 - 49578535 tttttagacggagttttgctcttgttacccaggctggagtgcaatggcacgatcttggctcaccgcaacctccacctcctgggttcaggcaattctcctgcctcagcct--cctgagtagctgggattacaggcacgcgccacc i calJac3.chr19 C 0 C 0 e mm10.chr1 178795665 0 + 195471971 C e canFam3.chr7 36361435 122 + 80974532 I a score=326117.000000 s hg38.chr1_KI270759v1_alt 202699 113 + 425601 acgcccggctaattttttgtatttctagtagagatggggtttcaccgtgttagccaggatggtctcgatctccttacctcgtgatcctcccgcctcaacctccccaagtgctg s panTro4.chr1 224956336 113 + 228333871 acgcccggctaattttttgtatttctagtagagatggggtttcaccgtgttagccaggatggtctcgatctccttacctcgtgatcctcccgcctcaacctccccaagtgctg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314205 113 - 229942017 acgcctggctaattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcaatctccttacctcgtgatccgcccacctcagcctccccaagtgctg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204177 113 - 143122389 acgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918531 113 - 229590362 tcgcctggctaattttttgtatttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacccacctcggcctcccaaagtgctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223681812 113 - 227556264 tcgcctggctaattttttgtatttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16732130 113 - 220367699 atgcctggctagttttttgtatttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgagctcgcgatccgcccgcctcggcctcccaaagtgctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82530411 113 + 85787240 acacccggctaattttttgtatttttagtagagatggggtttcaccatgttagccacgatggtctcgatctcctgagctcgcgatccacctgcctcggcctcccaaagtgctg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14211511 113 - 49578535 atgcccagctaattttttgtatttttagtagagacggggtttcaccatgttgaccaggatggtctcgatctcttgacctcgtgatccacccacctcggcctcccaaagtgctg i calJac3.chr19 C 0 I 30 s canFam3.chr7 36361557 50 + 80974532 atgctcaactaact------------------------gtaccaccctgaca----------tcccTATCCCATTACT----------------------------AGTGTG- i canFam3.chr7 I 122 C 0 e mm10.chr1 178795665 0 + 195471971 C a score=25200.000000 s hg38.chr1_KI270759v1_alt 202812 9 + 425601 TGTGATCCT s panTro4.chr1 224956449 9 + 228333871 TGTGATCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314318 9 - 229942017 TGTGATCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204290 9 - 143122389 TGTGATCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918644 9 - 229590362 TGTGATCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223681925 9 - 227556264 TGTGATCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16732243 9 - 220367699 tgtgATCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82530524 9 + 85787240 TGTGATCCC i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36361607 9 + 80974532 AATGATTTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178795665 0 + 195471971 C e calJac3.chr19 14211624 30 - 49578535 I a score=44509.000000 s hg38.chr1_KI270759v1_alt 202821 14 + 425601 TAACTTTTAATCTA s panTro4.chr1 224956458 14 + 228333871 TAATTTTTAATCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314327 14 - 229942017 TAACTTTGAATCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204299 14 - 143122389 TAACTTTTAATCTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918653 14 - 229590362 TAACTTTTAATCTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223681934 14 - 227556264 TAACTTTTAATCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16732252 14 - 220367699 TAACTTTTAATCTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82530533 14 + 85787240 TAACTTTTAATCTA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178795665 14 + 195471971 TAACTTTCAACGTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36361616 13 + 80974532 TAACTTT-AATTTA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14211624 30 - 49578535 I a score=189913.000000 s hg38.chr1_KI270759v1_alt 202835 60 + 425601 CAGTTCCTCT--TTTTTTTTTAAGCCAAGTAGATGGGTGA-TTTTGTTTTCTGCTAATTATTT s panTro4.chr1 224956472 59 + 228333871 CAGTTCCTC---TTTTTTTTTAAGCCAAGTAGATGGGTGA-TTTTGTTTTCTGCTAATTATTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314341 59 - 229942017 CAGTTCCTC---TTTTTTTTTAAGCCAAGTAGATGGGTGA-TTTTGTTTTCTGCTAATTATTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204313 60 - 143122389 CAATTCCTCT--AATTTTTTTAAGCCAAGTAGATGGGTGA-TTTTGTTTTCTGCTAATTATTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918667 61 - 229590362 TAATTCATCTAATCTTTTTTTAAGGCGAGTAGATGGGTGA--TTTGTTTTCTGCTAATTATTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223681948 61 - 227556264 TAATTCCTCTAATCTTTTTTTAAGGCAAGTAGATGGGTGA--TTTGTTTTCTGCTAATTATTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16732266 61 - 220367699 TAATTCCTCTAATCtttttttAAGGCAAGTAGATGGGTGA--TTTGTTTTCTGCTAATTATTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82530547 61 + 85787240 TAATTCCTCTAATCTTTTTTTAAGGCAAGTAGATGGGTGA--TTTGTTTTCTGCTAATTATTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14211654 60 - 49578535 cAATTCCTCT--AAATTTTTTAAGCCAAGTAGATGGGTGA-TTTTGTTTTCTGCTAATTGTCT i calJac3.chr19 I 30 T 719 s mm10.chr1 178795679 60 + 195471971 TGAGTCTTTC--CATCTCTTTAAACAGAGCAAATGGGAGA-TCTTGTTTTCTGCTAATTATTT i mm10.chr1 C 0 C 0 s canFam3.chr7 36361629 48 + 80974532 TAATTCCTCC-----------AAGCCAAGTAAATGGGTTTTTTTTAATTCCTGCTAATT---- i canFam3.chr7 C 0 C 0 a score=38407.000000 s hg38.chr1_KI270759v1_alt 202895 12 + 425601 TGGTATCTTTCA s panTro4.chr1 224956531 12 + 228333871 TGGTATCTTTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314400 12 - 229942017 TGGTATCTTTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204373 12 - 143122389 TGGTATCTTTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918728 12 - 229590362 TGGTATCTTTCA i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223682009 12 - 227556264 TGGTATCTTTCA i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16732327 12 - 220367699 TGGTATCTTTCA i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82530608 12 + 85787240 TGGTATCTTTCA i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14210995 12 - 49578535 TGGCATCTTGTA i calJac3.chr19 T 719 I 1 s mm10.chr1 178795739 12 + 195471971 CAGCCTTCTCCA i mm10.chr1 C 0 I 316 e canFam3.chr7 36361677 0 + 80974532 C a score=150895.000000 s hg38.chr1_KI270759v1_alt 202907 55 + 425601 TTCCACCTCTGTTTCACCAAATTTAGTGACCGTTTTCATACATTGGGGCTAAATG s panTro4.chr1 224956543 55 + 228333871 TTCCACCTCTGTTTCACCAAATTTAGTGACCGTTTTCATACATTGGGGCTAAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314412 55 - 229942017 TTCCACCTCTGTTTCACCAAGTTTAGTGACCGTTTTCATACATTGGGGCTAATTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204385 55 - 143122389 TTCCACCTCTGTTTCACCAAGTTTAGTGACCGTTTTCATACATTGGGGCCAAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918741 55 - 229590362 TTCCAACTCTGTTCCACCAAATTTAGTGACCATTTTCTTACATTGGGGCTTAATG i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223682022 55 - 227556264 TTCCAACTCTGTTCCACCAAATTTAGTGACCATTTTCTTACATTGGGGCTTAATG i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16732340 55 - 220367699 TTCCAACTCTGTTTCACCAAATTTAGTGACCATTTTCTTACATTGGGGCTTAATG i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82530621 55 + 85787240 TTCCAACTCTGTTTCACCAAATTTAGTGACCATTTTCTTACATTGGGGCTTAATG i chlSab2.chr25 I 1 C 0 s calJac3.chr19 14211008 55 - 49578535 TTCCACCTCTGTTTCACCAAGTCTGGTGACCATTTTCGTACACTGGGGCTTCAtg i calJac3.chr19 I 1 I 651 s canFam3.chr7 36361677 14 + 80974532 ----------------------TTGGTGGTCCTTCT------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178795751 316 + 195471971 I a score=55898.000000 s hg38.chr1_KI270759v1_alt 202962 20 + 425601 TGGTGGTCGTTCTCCAGAAG s panTro4.chr1 224956598 20 + 228333871 TGGTGGTCGTTCTCCAGAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314467 20 - 229942017 TGGTGGTCGTTCTCCAGAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204440 20 - 143122389 TGGTGGTCCTTCTCCAGAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918796 20 - 229590362 TGGTAGTCCTTCTCCAGAAG i rheMac3.chr1 C 0 I 8 s macFas5.chr1 223682077 20 - 227556264 TGGTAGTCCTTCTCCAGAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16732395 18 - 220367699 TGGTAGTCCTTCTCCAGA-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82530676 20 + 85787240 TGGTGGTCCTTCTCCAGAAG i chlSab2.chr25 C 0 I 8 s calJac3.chr19 14211714 20 - 49578535 TGGTGGTCCCTCTGCAGAGT i calJac3.chr19 I 651 C 0 s canFam3.chr7 36361691 10 + 80974532 ----------TCTCCAGGAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178795751 316 + 195471971 I a score=2957.000000 s hg38.chr1_KI270759v1_alt 202982 12 + 425601 AGTGAGTGTAAG s panTro4.chr1 224956618 12 + 228333871 AGTGAGTGTAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314487 12 - 229942017 AGTGAGTGTAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204460 12 - 143122389 AGTGAGTGTAAG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223682097 8 - 227556264 --TGACTACA-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16732413 10 - 220367699 AGTGACTACA-- i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14211734 6 - 49578535 CGGGAG------ i calJac3.chr19 C 0 C 0 s canFam3.chr7 36361701 12 + 80974532 GGTTAATACATA i canFam3.chr7 C 0 C 0 e mm10.chr1 178795751 316 + 195471971 I e rheMac3.chr1 16918816 8 - 229590362 I e chlSab2.chr25 82530696 8 + 85787240 I a score=489240.000000 s hg38.chr1_KI270759v1_alt 202994 156 + 425601 -TTCGCTCTTACTTTGAGCAGCTTATCTCTGTTTAGGCGATTTCTTTGTCACCATTAA--TGGAAGTGTGACACCTTTCTGAGTCCCAAATGTATCGGTTTATCAAAAACCACATCTGCAATGCTGCACCTTGTACTGAGTTCACCTCAGTCTGGTACT s panTro4.chr1 224956630 156 + 228333871 -TTTGCTCTTACTTTGAGCAGCTTATCTCTGTTTAGGCGATTTCTTTGTCACCATTAA--TGGAAGTGTGACACCTTTCTGAGTCCCAAATGTATCGGTTTATCAAAAACCACCTCTGCAATGCTGCACCTTGTACTGAGTTCGCCTCAGTCTGGTACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314499 156 - 229942017 -TTCGCTCTTACTTTGAGCAGCTTATATCTGTTTAGGTGATTTCTTTGTCACCATTAA--TGGAAGGGTGACACCTTTCTGAGTCCCAAATGTATCAATTTATCAAAAACCACATCTGCACTGCTGCACCTTGTACTGAGTTCACCTCAGTCTGGTACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204472 156 - 143122389 -TTCGCTCTTACTTTGAGCAGCTTATCTCTGTTTAGGCGATTTCTTTGTCACCATTAA--TGGAAGTGTGACACCTTTCTGAGTCCCAAATGTATCAGTTTATCAAAAACCACATCTGCAATGCTGCACCTTGTACTGAGTTCACCTCAGTCTGGTACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918824 156 - 229590362 -TTTGGTTTTACTTTGAGCAGTTTATCTCTGTTTAGGCAATTTCTTTGTCACCATTAA--TGGAAGTGTGGCACCTTTCTGAGTCCCAAATGTATCAGTTTATCAAAAACCACATCTGCAGTGCTGCACCTTGTACTGAGTTCACCTCAGTCTGGTACT i rheMac3.chr1 I 8 C 0 s macFas5.chr1 223682105 156 - 227556264 -CTTGGTTTTACTTTGAGCAGTTTATCTCTGTTTAGGCAATTTCTTTGTCACCATTAA--TGGAAGTGTGGCACCTTTCTGAGTCCCAAATGTATCAGTTTATCAAAAACCACATCTGCAGTGCTGCACTTTGTACTGAGTTCACCTCAGTCTGGTACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16732423 156 - 220367699 -TTTGGTTTTACTTTGAGCAGTTTATCTCTGTTTAGgcaatttctttgtcaccattaA--TGGAAGTGTGGCACCTTTCTGAGTCCCAAATGTATCAGTTTATCAAAAACCACATCTGCAGTGCTGCACCTTGTACTGAGTTCACCTCAGTCTGGTACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82530704 156 + 85787240 -TTTGGTTTTACTTTGAGCAGTTTATCTCTGTTTAGGCAATTTCTTTGTCACCATTAA--TGGAAGTGTGACACCTTTCTGAGTCCCAAATGTATCAGTTTATCAAAAACCACATCTGCAATGCTGCACCTTGCACTGAGTTCACCTCAGTCTGGTACT i chlSab2.chr25 I 8 C 0 s calJac3.chr19 14211740 137 - 49578535 ------------TTTGAACAGCTCATCTCTGTTCAGGTGACTTCTTTGTCACCATTAG--TGGAAGTGTGACCC----CTGAGTTCCCAATGTATCAATTTATCAAAAACCGCATCTGCAGTGCTACACATGGTGCTGAGCTGACTTCGGTCTGG---- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36361713 154 + 80974532 CTCTTCTCCCACTACAAACAGCCCATTTCTACTTGGGACATCTCTTTGCCAACTGTGGGTTTTAAATGTGAAAGCTTTGTGAGCCTCAGAAACATCAGTTTATCAGAAGTCACCTCCACAGTATTGCACAT----CTG-GTTCACTTCACTCTCATATT i canFam3.chr7 C 0 C 0 e mm10.chr1 178795751 316 + 195471971 I a score=586729.000000 s hg38.chr1_KI270759v1_alt 203150 177 + 425601 TTCTTTGCCTTTTGTCTTGTTT-----------------------GCCTCCTTGTTAGATTAGCTCCTTAAAACTTTTT--CTTTTCATTTTCCACTAAGTCATAACTCTCTAGACTAAATCCTA---TTAAAGAAACAtttaaagtg-tttctttactgtgaagtgtatcatgcatg-aaaatagtgtgtgaaatggaggtagatg s panTro4.chr1 224956786 177 + 228333871 TTCTTTGCCTTTTGTCTTGTTT-----------------------GCCTCCTTGTTAGATTAGCTCCTTAAAACTTTTT--CTTTTCATTTTCCACTAAGTCATAACTCTCTAGACTAAATCCTA---TTAAAGAAACAtttaaagtg-tttctttactgtgaagtgtatcatgcatg-aaaatagtgtgtgaaatggaggtagatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314655 173 - 229942017 TTCTTTGCCTTTTGTCTTAT---------------------------CTCCTTGTTAGATTAGCTCCTTATAACTTTTT--CTCTTCATTTTCCACTAAGTCATAACTCTCTAGACTAAATCCTA---ATAAAGAAACATTTAAAGtg-tttctttactgtgaagtgtatcatgcatg-aaaatagtgtgtgaaatggaggtagatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204628 177 - 143122389 TTCTTTGCCTTTTGTCTTGTTT-----------------------ACCTCCTCGTTAGATTAGCTCCTTATAACTTTTT--CTCTTCATTTCCCACTAAGTCATAACTCTCTAGACTAAATCCTA---ATAAAGAAACAtttaaagtg-tttctttactgtgaagtgtatcatgcatg-aaaatagcatgtgaaatggaggtagatg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16918980 172 - 229590362 TTCTTTGCCTTTTGTCTTGTTT-----------------------ACCTCCTTGTTAGATTAGTTCCTTGTAACGTTTT--CTCTTCATTCTCCACTAAGTCATAACTCTCTAGACTAAATCTCA---ATAAAGAAACATTTAAAGTG------ATactgtgaagtgtatcatgcatg-aaaatagcgtgtgaaatggaggcagatg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223682261 172 - 227556264 TTCTTTGCCTTTTGTCTTGTTT-----------------------ACCTCCTTGTTAGATTAGTTCCTTGTAACGTTTT--CTCTTCATTCTCCACTAAGTCATAACTCTCTAGACTAAATCTCA---ATAAAGAAACATTTAAAGTG------ATactgtgaagtgtatcatgcatg-aaaatagcgtgtgaaatggaggcagatg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16732579 172 - 220367699 TTCTTTGCCTTTTGTCTTGTTT-----------------------ACCTCCTTGTTAGATTAGTTCCTTGTAACgtttt--ctcttcattctccaCTAAGTCATAACTCTCTAGACTAAATCCca---ataaagaaacatttaaagtG------ATACTGTGAAGTGTATCATGCGTG-AAAATAGCGTGTGAAATGGAGGCAGATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82530860 172 + 85787240 TTCTTTGCCTTTTGTCTTGTTT-----------------------ACCTCCTTGTTAGATTAGTTCCTTATAACGTTTT--CTCTTCATTCTCCACTAAGTCATAACTCTCTAGACTAAATCCCA---ATAAAGAAACATTTAAAGTG------ATactgtgaagtgtatcatgcatg-aaaatagtgtgtgaaatggaggcagatg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14211877 163 - 49578535 -------------GCCTTGTTT-----------------------ACCTCCTTGTTAGGTTAGCTCCTTGCGGCTTTTT--TTCTTCGCTCTCCACTGACTTGTAATTCCCTAGACCAAATCC-A---ATAGAGAAACACTTAAAGTG-TTTCTTTACTGTGAAGTGTGTCATGCATG-AAAATAGTGTGTGAGATGAAGGTAGATG i calJac3.chr19 C 0 I 304 s mm10.chr1 178796067 200 + 195471971 ttctttttcttttttcctgtttttttaaattttttaattttattAACCATCTGCATAGATGAACTCTTTGCAACTTTTA--CTTTTTATTTTCTGCTAAGTCACACCTCTC----CCAAACTTCAGACATTAGGATTCACTTAAAATGTTTTCTTTACTGTGAAAAGAATCAAGCATGCAGAATAATACATGA-ATATTGACAGATT i mm10.chr1 I 316 C 0 s canFam3.chr7 36361867 181 + 80974532 ---TTTTCTTCTTGTCCTATTA-----------------------ACCTCCTTTTTAAGTTAACTCTTTGCAATTTTTTTCCTATTCATTCTCCACTAAGTCCTCACTTTCTAGATGAAATCCCAGATGTTATGACCTAGTGAAAATTTCTTCTTTATTGTTATGTGTATCGTGCGTACAAAATATTATATGAACTGTAGTCAGATG i canFam3.chr7 C 0 C 0 a score=1120350.000000 s hg38.chr1_KI270759v1_alt 203327 313 + 425601 ttcagtttaaagaccaatagtagagcaaacgtctatataccaactcc----------tcaggttaagaaatCCTCTTGTGATATATTTA-------------TGCAC----GTGgagtagctactt-t--ttccagaatttggggacatgtaatgatgactgagagatcatatagtctacataaaacagctcatcatcctagaatgagaaagagagaaaccagccaataaagaagggcagtgtgtataggtacttacaatgagaaatacaaacaagatgggattggagccgttctctatgtctgggagagttagaaaagtttccaagaggatgagacttttga s panTro4.chr1 224956963 312 + 228333871 ttcagtttaaagaccaatagtagagcaaacgtctatataccaactcc----------tcaggttaagaaatCCTCTTGTGATATATTTA-------------TGCAC----GTGGAGTAGCTACTT-T--TTCCAGAATTTGGGGACATGTAATGATGACTGAGAGATCGTATAGTCTACATAAAACAGCTCATCATCCTAGAATGAGAAAGAGAGAAACCAGCCAATAAGGAAGGGCAGTGTGTAGAGGTACTTACAATGAGAAATACAAACAAGATGGGATTGGAGCCGTTCTCTATgcctgggagagttagaaaagtttccaagaggatgagacttttg- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226314828 313 - 229942017 ttcagtttgaacaccaatagtagagcaaacgtctacgtaccaaatcc----------tcaggttaagaaatCCTCTTGTGATATATTGA-------------TGCAC----ATGGAGTAGCTACTT-T--TTCCAGAATTTGGGGACATGTAATGATGACTGAGAGATCATCTAGTCTACATAAAACAGCTCATCATCCGAGAATGAGAAAGAGAGAAACCAGCCAATAAAGAAGGGCAGTGTGTAGAGGGACTTACAATGAGAAATACAAACAAGATGGGATTGGAGCCATTCCCTATgcctgggagagttagaaaagtttctaagaggatgagacttttga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140204805 313 - 143122389 ttcagtttaaagaccaatagtagagcaaacgtctatataccaactcc----------tcaggttaagaaatCCTCTTGTGATATATTTA-------------TGCAC----GTGgagtagctactt-t--atccagaatttggggacatgtaatgatgactgagagatcatctagtctacataaaacagctcattatcctagaatgagaaagagagaaaccagccaataaagaagggcagtgtgtagaggtacttacaatgagaaatacagacaagatgggattggagccgtttcctatgcctgggagagttagaaaagtttccaagaggatgagacttttga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16919152 326 - 229590362 ttcagtttaaagaccaattgtagagcaaatgtctatgtaccagctcc----------tcaggtcaagaaatCCTCTTGTGATAGATTTAGCCGTTTAGTTAGTGCAC----ACGgagtagctactt-t--agccagaatttggggacatgtagtgatgactgagagatcatctagtctacataaaacagctcatcatcctagaatgagaaagagagaaaccagccaataaagaagggcagtgtgtagaggtacttacaatgagaaatacaaacaagatgtgattggagccattccctctgcctgggagagttaggaaagtttccaagaggatgagacttttga i rheMac3.chr1 C 0 I 6 s macFas5.chr1 223682433 326 - 227556264 ttcagtttaaagaccaattgtagagcaaatgtctatgtaccagctcc----------tcaggtcaagaaatCCTCTTGTGATAGATTTAGCCATTTAGTTAGTGCAC----ACGgagtagctactt-t--agccagaatttggggacatgtagtgatgactgagagatcatctagtctacataaaacagctcatcatcctagaatgagaaagagagaaaccagccaataaagaagggcagtgtgtagaggtacttacaatgagaaatacaaacaagatgtgattggagccattccctctgcctgggagagttaggaaagtttccaagaggatgagacttttga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16732751 326 - 220367699 TTCAGTTTAAAGACCAATTGTAGAGCAAATGTCTATGTACCAGCTCC----------TCAGGTCAAGAAATCCTCTTGTGATAGATTTAGCCATTTAGTTAGTGCAC----ACGGAGTAGCTACTT-T--AGCCAGAATTTGGGGACATGTAGTGATGACTGAGAGATCATCTAGTCTACATAAAACAGCTCATCATCctagaatgagaaagagagaaaccagCCAATAAAGAAGGGCAGTATGTAGAGGTACTTACAATGAGAAATACAAACAAGATGTGATTGGAGCCATTCCCTATGCCTGGGAGAGTTAGGAAAGTTTCCAAGAGGATGAGACTTTTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82531032 326 + 85787240 ttcagtttaaagaccaattgtagagcaaatgtctatgtaccagctcc----------tcaggtcaataaatCCTCTTGTGATATGTTTAGCCATTTAGTTAGTGCAC----ATGGAGTAGCTACTT-T--ATCCAGAATTTGGGGACATGTAGTGATGACTGAGAGATCATCTAGTCTACATAAAACAGCTCATCATCCTAGAATGAGAAAGAGAGAAACCATCCAATAAAGAAGGGCAGTATGTAGAGGTACTTACAATGAGAAATACAAACAAGATGTGATTGGAGCCGTTCCCTATgcctgggagagttaggaaagtttccaagaggatgagacttttga i chlSab2.chr25 C 0 I 6 s calJac3.chr19 14212344 326 - 49578535 CTCAGTTTAAAGACCAATAGCAGAACAAAAGTCTATACGCCGACTCC----------TCAGGTTAAGAAATCCTTTCACGATATATTTAGGCATTTAGTTAGTGCAC----ATTGAGTGGTTACTT-C--ATCCAGAATTGGGGGACATGATACGATGCCTGAGAGATCATCTAGTCTACATAAGACAGCTCGTCATCCTAGAATGAGAAAGAGAGAAACCAGCCAGTAAATAAGGCCAGTGTGCAAAGGTACTTGCAATGAGAAATACAAACACGATGTGACTGGAGCTGTTCCCTATgtctgggagagtcagaaaattttccaagaggatgagacttttga i calJac3.chr19 I 304 C 0 s mm10.chr1 178796267 317 + 195471971 CCCAGTTCCAAGACACATAACAAAGCCAACACCTATGCACCAACTGCTTGACCAATATCAACATAAGAGACGATCTTATGTTTCACTTT--------TCAAGTAAAT----ATCCAGGGTCTACTTGT--ATCCAGAACTT-GTGATATATATTGACGACCGTCAGATCATCTGGCCTACA-GAAATAGTTCA-CGTCATTAACTAGGCATGAAATCTACCAACCAGTAACT----GCAGGGCAAAAAGTCGTTTGCAGTGAGAAATACAAACAGGAAGAGA--GTAACAGTTAGTTACCTCTGGGAGAGTTGGAATGGTTTCC-AGAGGATGTGACTTAA-- i mm10.chr1 C 0 I 3 s canFam3.chr7 36362048 324 + 80974532 CTCAGTTTGAAGACAAATAAGAAACCAAACATCTATGTATCAGCCAC----------CTAGGTTAAGACATACTCTTATGACATatttagccatttaactaatgcacatttattgagtgcctgctt-tgcatccagactttgagaacatatag-gatgactgagagatcatgtaattgacatgaaacagcacatcaacatctaatagggaagaaa--aattggccaatcagtaattgcaacatataaaggtatttgcaggaggggatacagacaaaat-----TGGAACCCATGCCTACACCTGGGAGAGTTGGCAAGGCTACTAAAAGGGTGAGACTTTGGA i canFam3.chr7 C 0 C 0 a score=-25592.000000 s hg38.chr1_KI270759v1_alt 203640 21 + 425601 ---------------------aa--agtttccaa---------------------------gaggatgaga s ponAbe2.chr1 226315141 10 - 229942017 ---------------------aatgggtttt---------------------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140205118 10 - 143122389 ---------------------actgggtttt---------------------------------------- i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223682759 6 - 227556264 ---------------------gctggg-------------------------------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16733077 6 - 220367699 ---------------------GCTGGG-------------------------------------------- i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14212670 6 - 49578535 ---------------------actggg-------------------------------------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178796587 3 + 195471971 ---------------------GTT----------------------------------------------- i mm10.chr1 I 3 C 0 s canFam3.chr7 36362372 71 + 80974532 CTCAATTCTCAAAGCAACCCAAATGGCTTGCTTATCTATTTATTAgagaggtgtagagggggagggagaga i canFam3.chr7 C 0 I 134 e rheMac3.chr1 16919478 6 - 229590362 I e chlSab2.chr25 82531358 6 + 85787240 I e panTro4.chr1 224957275 0 + 228333871 C a score=191.000000 s hg38.chr1_KI270759v1_alt 203661 2 + 425601 ct s canFam3.chr7 36362577 2 + 80974532 CT i canFam3.chr7 I 134 C 0 e mm10.chr1 178796590 0 + 195471971 C e calJac3.chr19 14212676 0 - 49578535 C e rheMac3.chr1 16919478 6 - 229590362 I e chlSab2.chr25 82531358 6 + 85787240 I e papAnu2.chr1 16733083 0 - 220367699 C e macFas5.chr1 223682765 0 - 227556264 C e nomLeu3.chr5 140205128 0 - 143122389 C e ponAbe2.chr1 226315151 0 - 229942017 C e panTro4.chr1 224957275 0 + 228333871 C a score=106008.000000 s hg38.chr1_KI270759v1_alt 203663 44 + 425601 ----------ttttaagggatggtttgcctgaggaagatgagcgttccaggtaa s panTro4.chr1 224957275 40 + 228333871 --------------aagggatggtttgcctgaggaagacgagcgttccaggtaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226315151 40 - 229942017 --------------aagagatggtttgcctgaggaagatgagtgttccaggtaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140205128 40 - 143122389 --------------aagggatggtttgcctgaggaagatgagtgttccaggtaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16919484 41 - 229590362 ----------ttttaagggatggtttgcct---ggagatgagcgttctgggtta i rheMac3.chr1 I 6 C 0 s macFas5.chr1 223682765 41 - 227556264 ----------ttttaagggatggtttgcct---ggagatgagcgttctgggtta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16733083 40 - 220367699 ----------TTTTAAGGGATGGTTTGCCT---GGAGCTGAGCATTCTGGGTT- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82531364 41 + 85787240 ----------ttttaagggatggtttgcct---ggagatgagtgttctgggtta i chlSab2.chr25 I 6 C 0 s calJac3.chr19 14212676 43 - 49578535 ----------ttttaaaggatggtttgcctggggaaga-gagcgtttcaggcaa i calJac3.chr19 C 0 C 0 s mm10.chr1 178796590 39 + 195471971 ---------------AAGGGTGATTTGCTTGGGAAACAAGAGCATTCCAGGCAA i mm10.chr1 C 0 I 439 s canFam3.chr7 36362579 51 + 80974532 TTGGACTGGGTGTTTCGGGATGATTTGTCT---GAAGAAGAGAATTCTTGGCAA i canFam3.chr7 C 0 C 0 a score=136351.000000 s hg38.chr1_KI270759v1_alt 203707 56 + 425601 agggaacagcatAGCACGTGT-----------------------------------------------------------------------------AGTGATTCTTCTCCCTCCTCATTCCCCTCTCACCA s panTro4.chr1 224957315 56 + 228333871 agggaacagcaTAGCACGTGT-----------------------------------------------------------------------------GGTGATTCTTCTCCCTCCTCATTCCCCTCTCACCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226315191 56 - 229942017 agggaacagcatAGCACGTGT-----------------------------------------------------------------------------AGTGATTCTTCTCCCTCCTCATTCCCCTCTCACCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140205168 55 - 143122389 a-agaacagcCTAGCACGTGT-----------------------------------------------------------------------------AGTGATTCTTCTCTCTCCTCACTCCCCTCTCACCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16919525 119 - 229590362 agggaacgggatagcacatgtagccccagagctataaaagcactgcCCTTTGAGAAAG--------CGGCA------GGTCATTCCTTCTCTCGTTTCAGTGATTCTTCTCCCTCCTCACTCCCCTCTCACCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223682806 119 - 227556264 agggaacaggatagcacatgtagtcccagagctataaaagcactgcCCTTTGAG---AAAG-----CGGCA------GGTCATTCCTTCTCTCGTTTCAGTGATTCTTCTCCCTCCTCACTCCCCTCTCACCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16733123 119 - 220367699 AGGGAACGGAATAGCACGTGTAGTCCCAGAGCTATAAAAGCACTGCCCTTTGAG---AAAG-----GGGCA------GGTCATTCCTTCTCTCATTTCAgtgattcttctccctcctcaCTCCCCTCTCACCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82531405 119 + 85787240 agggaacggcatagcacgtgtagtcccagagctataaaagcactgcCCTTTG--------AGAAAGCGACA------GGTCATTCCTTCTCTCGTTTCAGTGATTCTTCTCCCTCCTCACTCCCCTCTCACCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14212719 118 - 49578535 agggaacagcatagcatgtgcagtcccagagctataaaagcattgcCCTTT---------------TGGAAAGCGGTGGTCATTGCTTCTCTTGTTCCAGTGGTTCTTCTCCCTCCTCGCTCCCCTCTCACCA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36362630 68 + 80974532 AGGCAACAACATA-----TGTAGTCTCAGGGCT---------------------------------TGGAA---------------------------AGTGGCCAGTCCTTCTATCAGCTCCCACTTGGCTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178796629 439 + 195471971 I a score=4206226.000000 s hg38.chr1_KI270759v1_alt 203763 1226 + 425601 TTCTGACCATTCACCTTCAGTTTCGTTTCCACTCTCCTATCCTCCATAAATGTTGGTGTTCCCATAGGTGTTGCATTAGGATCTCTTCTCACGTCATTCAAT-T-TTCATCCATTCACTTGCT----CAATGTCAATGAAGCAATGGGTCTCCAGAAACT--CCTGCCTGC---agaactatctgtggagcttggtaaaatgcaga---tggtccc-accagctcaatcagaatctttggggtagggt------------------------------ccaggtatcTTTAGTGCAGATG----------------------------ACTGGGACTCCACATGGAGAAACACAGGTGAAC------------------AGGGAGGGTTGGAGAGACCACTCAGGAATCAGTCACAGGTGACCTTGTGcttcctgc------taccatggctgcccctccc----------agcctgcctcacctgtgcctttctccct----tctcccttcctgcctTCAGCTCCTCTG------TTGCTTCTTCTTCCTTAAACATCTTCACCGGTTCCTGTGCTATTACAGAGCC------CCGTCTGTGGGTCT-CATGTCTCTGCTCCATGCCACGCCCTCCCTT---GGGCATCATCTGGGCTTTGGCTGGGTCTGTGGAGGGTCCTGGGCTGCAGT-GCCATGAACAGTGGAGTGGGGCATGCGAAGTTGACAGTCACACTGAAAGCT-----CCTGCCTCGCCTCTCTACCTTCTTCTCT------TTTGGGGGTTTCTTTCCTGAGGCAGGGAAAAAGAAACAGGAACCCAG-----ACCAAACTGAGGAAAACA-CGATCAGAGATGAGATGGGGTCAGAGGCAAAGG--GCTGTTTGTTG-GGTTTGCACTTTCATTACTGAGAGCATTGGAATAG-TTTTAAGGCGTGCAAACTGTGAGACTAGACAATTTCACTTAGAAAATGAAAC--GTGCATGCAGATGTTATTCTCATGGGGATATATATCTGCATCTGTTTGTCTACAAGTGTTCCCTTGCAGAGTCACAGACATAT--ACAAAACCTGGGTTCCATCAGCTTTGTCTGCACATACGTGGCTAAATGTGTACAG---GGATGTACAATTAAAGATTTTAAACACTTGATTTTGACAGTATATTTTGCAGCTGCTGTGCCAAGAA---CCCTAAGCTACTGTGGGTTAATT-GGAGTTGTAGCAAGTATTTCTTTCTCGGCTG-TCTCTTTTAGCAGAG------CT--------tctctc---------------tctctctctctc---------------tctctctctct---------------------------------------------------------------------------------------ctctctctct-------------TCccctctctccct------------------------gtttcac-----ccctccctgcctgcctgcctctgcccctccctccctcc------------ctccctctctc s panTro4.chr1 224957371 1253 + 228333871 TTCTGACCATTCACCTTCAGTTTCGTTTCCACTCTCCTACCCTCCATAAATGTTGGTGTTCCCATAGGTGTTGCATTAGGATCTCTTCTCACGTCATTCAAT-T-TTCATCCATTCACTTGCT----CAATGTCAATGAAGcaatgggtctccagaaact--cctgcctgc---agaactatctgtgcagcttggtaaaatgcaga---tggtccc-acaagctcaatcagaatctttggggtagggt------------------------------ccaggtatcTTTAGTGCAGATG----------------------------ACTGGGACTCCACATGGAGAAATACAGGTGAACAGAGCCCTCATAAAGAG-AGGGAGGGTTGGAGAGACCACTCAGGAATCAGTCACAGGTGACCTTGTGCTTCCTGC------TACCATGGCTGCCCCTCCC----------AGCCTGCCTCACCTGTGCCTTTCTCCCT----TCTCCCTTCCTGCCTTCAGCTCCTCTG------TTGCTTCTTCTTCCTTAAACATCTTCACCGGTTCCTGTGCTATTACAGAGCC------CCGTCTGTGGGTCT-CATGTCTCTGCTCCATGCCACGCCCTCCCTT---GGGCATCATCTGGGCTTTGGCTGGGTCTGTGGAGGGTCCTGGGCTGCAGT-GCCATGAACAGTGGAGTGGGGCATGTGAAGTTGACAATCACACTGAAAGCT-----CCTGCCTCGCCTCTCTACCTTCTTCTCT------TTTGGGGGTTTCTTTCCTGAGGCAGGGAAAAAGAAACAGGAACCCAG-----ACCAAACTGAGGAAAACA-CGATCAGAGATGAGATGGGGTCAGAGGCAAAGG--GCTGTTTGTCG-GGTTTGCACTTTCATTACTGAGAGCATTGGAATAG-TTTTAAGGTGTGCAAACTGTGAGACTAGACAATTTCACTTAGAAAATGAAACATGTGCATGCAGATGTTATTCTCATGGGGATATATGTCTGCCTCTGTTTGTCTACAAGTGTTCCCTTGCAGAGTCACAGACATAT--ACAAAACCTGGGTTCCATCAGCTTTGTCTGCACATACGTGGCTAAATGTGTACAG---GGATGTACAATTAAAGATTTTAAACACTTGATTTTGACAGTATATTTTGCAGCTGCTGTGCCAAGAA---CCCTAAGCTACTGTGGGTTAATG-GGAGTTGTAGCAAGTATTTCTTTCTCGGCTG-TCTCTTTTAGCAGAG------CTtctctctctctctc---------------tctctctctctc---------------tctctctctct---------------------------------------------------------------------------------------ctctctctct-------------tcccctctctccct------------------------gtttcac-----ccctccctgcctgcctgcctctgcccctccctccttcc------------ctccctctctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226315247 1243 - 229942017 TTCTGACCATTCACCTTCAGTTTCGTTTCCACTCTCCTATCCTCCATAAATGTTGGCGTTCCCACAGGTGTTCCATTAGGATCTCTTCTCACATCATTCAAT-T-TTCATCCATTCACTTGCT----CAATAGCAATGAAGCAATGGGTCTCCAGAAACT--CCCGCCTGC---agaactatctgtggagcttggtaaaatgcaga---tggtccc-accagctcaatcagaatctttggggttgggt------------------------------ccaggtatcTCTAGTGCAGATG----------------------------ACTGGGACTCCACATGGAGAAATGCAGGTGAACAGAGTCCTCATAAAGAG-AGGGAGGGTTGGAGAGACCACTCAGGAATCAGTCACAGGCGACCTTGTGCTTCCTGC------CAGCATGGCTGCCCCTCCC----------AGCCTGCCTCACCTGTGCCTTTCTCTCT----TCTGCTTTCCTGCCTTCAGCTCCTCTG------TTGCTTCTTCTTCCTTAAACATCTTCACCAGTTCCTGTGCTATTACAGAGCC------CCATCTGTGGGTCT-CATGTCTCTGCTCCATGCCACGCCCTCCCTT---GGGCATCATCTGGGCTTTGGCTGGGTCTGTGGAGGGTCCTGGGCTGCAGT-GCCACAAACAGTGGAGTGGAGCATGTGAAATTGACAGTCACATTGAAAGCT-----CCTGCCTCGCCTCTCTACCTTCTTCTCT------TTTGGGGGTTTCTTTCCTGAGGCAGGGAAAAAGAAACAAGAACCCAG-----ACCAAACTGAGGAAAACA-TGATCAGAGATGAGATGGGGTCAGAGGCAAAGG--GCTGTTTGTCG-GGTTTGCACTTTCATTACTGAGAGCATTGGAATAG-TTTTAAGGTGTGCAAACTGTGAGACTAGACAATTTCACTTAGGAAATGAAACACGTGCACGCAGATGTTATTCTCATGGGGATATATATCCGCATCTGTTTGTCTACAAGTGTTCCCTTGCAGAGTCACAGACATAT--ACAAAACCTGGCTTCCATCAGCTTTGTCTGCACATACGTGGCTAAATGTGTACAG---GGATGTACAATTAAATATTTTAAACATTTGATTTTGACAGTATATTTTGCAGCTGCTGTGCCAAGAA---CCCTAAGCTACTGTGGGTTAATG-GGAGTTATAGCAAGTATTTCTTTCTCGGCTG-TCTCTTTTAGCAGAG------CT----------tctc---------------tctctctctctc---------------tctctctctct---------------------------------------------------------------------------------------ctctctctct-------------tcccctctctccct------------------------gtttcac-----ccctccctgcctgcctgcctctgcccctccctccctcc------------ctccctctctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140205223 1239 - 143122389 CTCTGGCCATTCACCTTCAGTTTCGTTTCCACTCTCCCATCCTCCATAAATGTTGGCATTCCCACAGGTGTTCCATTAGGATCTCTTCTCACGTCATTCAGT-T-TTCATCCATTCACTTGCT----CATTATCAATGAAGcagtgggtctccagaaact--tccacctgc---agaactatctgtggagcttggtaaaatgcaga---tggtccc-accagctcagtcagaatctttggggtagggt------------------------------ccaggtatcTCTAGTGCAGAGG----------------------------ACTGGGACTCCACATGGAGAAACGCAGGTGAACAGAGCCCTTATAAAGAG-AGCGAGGGTTGGAGAGACCACCCAGGAATCAGTCACAGGTGACCTTGTGCTTCCTGC------CACCATGGCTGCCCCTCCC----------AGCCTGCCTCACCTGTGCCTTTCTCCCT----TCTCTCTTCCTGCCTTCAGCTCCTGTG------TTGCTTCTTCTTCCTTAAACATCTTCACCGGTTCCTGTGCTATTACAGAGCC------CCGTCTGTGGGTCT-CATGTCTCTGCTCCATGCCACGCCCTCCCTT---GGGCATCATCTGGGCTTTGGCTGGGTCTGTGGAGGGTCCTGGGCTGCAGT-GCCATGAACAGTGGAGTGGGGCATGTGAAGTTGACAGTCACATTGAAAGCT-----CCTGCCTCACCTCTCTACCTTCTTCTCT------TTCGGGGGTTTCTTTCCTGAGGCCGGGAAAAAGAAACAGGAACCCAG-----ACCAAACTGAGGAAAACA-CGATCAGAGATGAGATGGGGTCAGAGGCAAAGG--GCTGTTTGTCG-GGTTCGCACTTTCATTACTGAGAGCATTGGAATAG-TTCTAAGACATGCAAACTGTGAGACTAGACAATTTCACTTCGAAAATGAAACATGTGCATGCAGATATTATTCTCGTGGGGATATATATCTGCATCTGTTTGTCTACAAGTGTTCCTTTGCAGAGTCACAGACGTAT--ACAAAACCTGGGTTCCATCAGCTTTGTCTGCACATACGTGGCTAAATGTGTATAG---GGATGTACAGTTAAAGGTTTTAAACGTTTGATTTTGACAGTATATTTTGCAGCTGCTGTGCCAAGAA---CCCTAAGCTACTGTGGGTTAATG-GGAGTTGTAGCAAGTATTTCTTTCTCGTCTG-TCTCTTTTAGCAGAG------CT--------------------------------------------------------tctctctctct---------------------------------------------------------------------------------------ctgtctctct-------------tcccctttctccct------------------------gtctcAC-----CCCTCCCTGCCTGCCTGCCTCTGCccctccctccctccctccctccctctctccctccctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16919644 1344 - 229590362 TTCTGACTATTCGCCTTCAGTTTCCTTTCAACTCTCGCATCCTCCATAAATGTTGGCATTCCCATAGGTGTTCTGTTAGGATCTCTTCTCACGTCATTCACT-T-TTCATCCATTCATTTGCT----CAATATCAATGAAGCagtgggtctccagaaact--cccacctgcaggagaacgatctgtggagcttggtaaaatgcaca---cggtccc-accagctcaatcagaatctttggggtaaggt------------------------------ccaggtatctCTAGTGCAGATG----------------------------ACTGGGACTCCACATGGAGAAACACAGGTGAACGGAGTCCTCATAAAGAG-AGGGAGGGTTGGAGAGACCACTCAGGAATCAGTCACAGGCAACCTTGTGCTTCCTGC------CACCATGGCTGCCCCTCCC----------AGCCTGCCTCACCTGTGCCTTTCTCCCT----TCTCCCTTCCTGCCTTCAGCTTCTCTG------TTGCTTCTTTTTCCTTAAACATCTTCACCAGTTCCCGTGCTATTACAGAGCC------CCGTCTGTGGGTCT-CACGCCTCTGATCCATGCCACGCCCTCCCGT---GGGCATCATCTGGGCTTTGGCTGGATCTGTGGAGGGACCTGGGTTGCAGT-GCCATGAACGATGGGGTGGGGCATGCACAGTTGACAGTCACACTGAAAGCT-----CCTGCCTCGCCTCTCTACCTTCTTCTCT------TTTGGGGGTTTCTTTCCTGAGGTAGGGAAAAAGAAACAGGAACCCAGACCAAACCAAACTGAGGAGAACA-CGATCAGAGATGAGACGCTGTCAGAGGCAAAGG--GCTGTTTGTTG-GGTTTGCACTTTCATTACCGAGAGCATTGGAATAG-TTTTAAGACATGCAAACTGTGAGACTAGACAATTTCACTTAGAAAACGAAACATGTGCATGCAGATATTATTCTCATGGGGATATATATCTGCATCTGTTTGTCTACGAGTGTTCCCTTGCAGAGTCACAGACATAT--ACAAAACCTGGGTTCCGTCAGCTTTGTCTACACATACATGGCTAAATGTGTATAG---GGATATACAATTAAAGATTTTAAATGTTTGATTTTCACAGTATATTTTGCAGCTGCTGTGCCAAGAA---CCCTAAGCTACTGTGGGTTAATG-GGAGTTGTTGCAAGTATTTCTTTCTCGGCTG-TCTCTTTTAGCAGAG------CTCctctctctctctc---------------tctctctctctc---------------tctctctctcccccccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctctctctcccgcccccccccctctct-------------tcctctctctccct------------------------gtctcAC-----ccctccctgcctgcctgcctctgcccctccctcc----------------ctccctctctc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223682925 1273 - 227556264 TTCTGACTATTCGCCTTCAGTTTCCTTTCAACTCTCGCATCCTCCATAAATGTTGGCATTCCCATAGGTGTTCTGTTAGGATCTCTTCTCACGTCATTCACT-T-TTCATCCATTCATTTGCT----CAATATCAATGAAGcagtgggtctccagaaact--cccacctgcaggagaacgatctgtggagcttggtaaaatgcaga---cggtccc-accagctcaatcagaatctttggggtaaggt------------------------------ccaggtatctCTAGTGCAGATG----------------------------ACTGGGACTCCACATGGAGAAACACAGGTGAACGGAGTCCTCATAAAGAG-AGGGAGGGTTGGAGAGACCACTCAGGAATCAGTCACAGGCAACCTTGTGCTTCCTGC------CACCATGGCTGCCCCTCCC----------AGCCTGCCTCACCTGTGcctttctccct----tctcccttcctgccttcagcttctcTG------TTGCTTCTTTTTCCTTAAACATCTTCACCAGTTCCCGTGCTATTACAGAGCC------CCGTCTGTGGGTCT-CACGCCTCTGATCCATGCCACGCCCTCCCGT---GGGCATCATCTGGGCTTTGGCTGGATCTGTGGAGGGACCTGGGTTGCAGT-GCCATGAACGATGGGGTGGGGCATGCAAAGTTGACAGTCACACTGAAAGCT-----CCTGCCTCGCCTCTCTACCTTCTTCTCT------TTTGGGGGTTTCTTTCCTGAGGTAGGGAAAAAGAAACAGGAACCCAGACCAAACCAAACTGAGGAGAACA-CGATCAGAGATGAGACGCTGTCAGAGGCAAAGG--GCTGTTTGTTG-GGTTTGCACTTTCATTACCGAGAGCATTGGAATAG-TTTTAAGACATGCAAACTGTGAGACTAGACAATTTCACTTAGAAAACGAAACATGTGCATGCAGATATTATTCTCATGGGGATATATATCTGCATCTGTTTGTCTACGAGTGTTCCCTTGCAGAGTCACAGACATAT--ACAAAACCTGGGTTCCGTCAGCTTTGTCTACACATACATGGCTAAATGTGTATAG---GGATATACAATTAAAGATTTTAAATGTTTGATTTTCACAGTATATTTTGCAGCTGCTGTGCCAAGAA---CCCTAAGCTACTGTGGGTTAATG-GGAGTTGTTGCAAGTATTTCTTTCTCGGCTG-TCTCTTTTAGCAGAG------CTCctctctctctctc---------------tctctctctctc---------------tctctctctct----------------------------------------------------------------------ctctctctctc-tctctccctctctct-------------tcctctctctccct------------------------gtctcac-----ccctccctgcctgcctgcctctgcccctccctcc----------------ctccctctctc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16733242 1231 - 220367699 TTCTGACCATTTGCCTTCAGTTTCCTTTCAACTCTCGCATCCTCCATAAATGTTGGCATTCCCATAGGTGTTCCGTTAGGATCTCTTCTCACGTCATTCact-t-ttcatccattcatttgct----CAATATCGGTGAAGCAGTGGGTCTCCAGAAACT--CCCGCCTGCAGGAGAATGATCTGTGGAGCTTGGTAAAATGCAGT---CGGTCCC-ACCAGCTCAATCAGAATCTTTGGGGTAAGGT------------------------------CCAGGTATCTCTAGTGCAGATG----------------------------ACTGGGACTCCACATGGAGAAACGCAGGTGAATGGAGTCCTCATAAAGAG-AGGGAGGGTTGGAGAGACCACTCAGGAATCAGTCACAGGCAACCTTGTGCTTCCTG---------CCAGGGCTGCCCCTCCC----------AGCCtgcct------------------t----tctcccttcctgccttcagCTTCTCTG------ttgcttctttttccttaaaCATCTTCACCAGTTCCTGTGCTATTACAGAGCC------CCATCTGTGGGTCT-CACGCCTCTGATCCATGCCATGCCCTCCCGT---GGGCATCATCTGGGCTTTGGCTGGATCTGTGGAGGGACCTGGGTTGCAGT-GCCATGAACGATGGGGTGGGGCATGCAAAGTTGACAGTCACACTGAAAGCT-----CCTGCCTCGCCTCTCTACCTTCTTCTCT------TTTGGGGGTTTCTTTCCTGAGGtagggaaaaagaaacaggaacCCAG-----ACCAAACTGAGGAGAACA-CGATCAGAGATGAGACGCTGTCAGAGGCAAAGG--GCTGTTTGTCG-GGTTTGCACTTTCATTACCGAGAGCATTGGAATAG-TTTTAAGACATGCAAACTGTGAGACTAGACAATTTCACTTAGAAAACGAAACATGTGCATGCAGATATTATTCTCATGGGGATATATATCTGCATCTGTTTGTCTACGAGTGTTCCCTTGCAGAGTCACAGACATAT--ACAAAACCTGGGTTCCATCAGCTTTGTCTACACATACATGGCTAAATGTGTATAG---AGATATAcaattaaagattttaaatgtttgattttgaCAGTATATTTTGCAGCTGCTGTGCCAAGAA---CCCTAAGCTACTGTGGGTTAATG-GGAGTTGTTGCAAGTATTTCTTTCTCGGCTG-TCTCTTTTAGCAgag------ctcctctctctctctc---------------tctctctttctc---------------tctctctctct---------------------------------------------------------------------------------------tcctctctct-------------tcctctctctccct------------------------gtctcac-----ccctccctgcctgcctgcctctgcccctccctcc----------------ctccctctctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82531524 1252 + 85787240 TTCTGACCATTCGCCTTCAGTTTCCTTTCAACTCTCCCATCTTCCATAAATGTTGGCATTCCCATAGGTGTTCCATTAGGATCTCTTCTCACGTCATTCACT-T-TTCATCCATTCATTTGCT----CAATATCAATGAAGcagtgggtctccagaaact--cccgcctgcaggagaacgatctatggagcttggtaaaatgcaga---cggtccc-accagctcaatcagaatctttggggtaaggt------------------------------ccaggtatctCTAGTGCAGATG----------------------------ACTGGGACTCCACATGGAGAAACGCAGGTGAACGGAGTCCTCATAAAGAC-AGGGAGGGCTGGAGAGACCACTCAGGAATCAGTCACAGGCAACCTTGTGCTTCCTGC------CACCATGGCTGCCCCTCCC----------AGCCTGCCTCACAGGTGcctttctccct----tctcccttcctgccttcagcttctcTG------TTGCTTCTTTTTCCTTAAACATCTTCACCAGTTCCTGTGCTATTACAGAGCC------CCGTCTGTGGGTCT-CATGCCTCTGATCCATGCCACGCCCTCCCTT---GGGCATCATCTGGGCTTCGGCTGGATCTGTGGAGGGACCTGGGTTGCAGT-GCCATGAATAATGGAGTGGGGCATGCAAAGTTGACAGTCACACTGAAAGCT-----CCTGCCTCGTCTCTCTACCTTCTTCTCT------TTTGGGGGTTTCTTTCCTGAGGTAGGGAAAAAGAAACAGGAACTCAG-----ACCAAACTGAGGAGAACA-CGATCAGAGATGAGACGCTGTCAGAGGCAAAGG--GCTGTTTGTCG-GGTTTGCACTTTCATTACCGAGAGCATTGGAATAG-TTTTAAGACATGCAAACTGTGAGACTAGACAATTTCACTTAGAAAACGAAACATGTGCATGCAGATATCATTCTCATGGGGATATATATCTGCATCTGTTTGTCTACGAGTGTTCCCTTGCAGAGTCACAGACATAT--ATAAAACCTGAGTTCCGTCAGCTTTGTCTACACATACATGGCTAAATGTATATAG---GGATGTACAATTAAAGATTTTAAACATTTGATTTTGACGGTATATTTTGCAGCTGCTGTGCCAAGAA---CCCTAAGCTACTGTGGGTTAATG-GGAGTTGTAGCAAGTATTTCTTTCTCGGCTG-TCTCTTTTAGCAGAG------CTCctctctctctctc---------------tctctctctctc---------------ttcctctctct---------------------------------------------------------------------------------------ctctctctct-------------ccctctctctcCTT------------------------GTCTCAC-----ccctcccttcctgcctgcctctgcccctccctcc----------------ctccctctctc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14212837 1369 - 49578535 TTCTGACCATTTATCTTCAGTTTTGTTTCCAGTCTCCTATCCTCCATAAATGTTGGCATTCCCATAGGTGTTCCGTTAGGATCTCTTCTCACGTCATTCAAT-T-TTTATCCATTCATTTGCT----CAATGTCAACGAAGcagtgagtctccagaaact--cccgctggcaggagaactatctgtggagcttggtgaaatgtgga---tggtccc-accagctcaatcagaatctttggggtaaggtctgggtagctgcacttttaacaagctgctgccaggtATCTCAAGTGCAGATG----------------------------ATTGGGTCCCCACATGGAGAAATCCAGGTGAAAGGATTCCTCATAAAGAG-AGGGAGGGTTGGAGAGACTGCACAGGAATCAGTCGCATGCAACCTTGAGCTTCCTGC------CGTCATGGCTGCCCTTCCC----------AGCCTGCCTCACCTGTGCCTTTCTCCCT----CCTTCCTTCCTGCCTTCAGCTCCTCTG------TTGCTTCTTCTTCCTTAAACCCCTTCATCCATTCCTGTGCTATTGCAGAGCC------CCATCTGTGGATCT-CATGTCTTTGCTCCATGCCAGACCCTCTCTT---GGGCATCATCTGTGCTTTGGCTGGGTCTGTGGAGCATCCTGGGCTGCAAT-GCCATAAACAGTGGAGTGTGGCATGCAAAGTTAGCAGTCACACTGAAAGCT-----CCTGCCTTGCCTCTCTACCCTCTTCTCT------TTTGGGCGTTTCTTTCCTGAGGCAGGGAAAAAGAAACAGGAACCCAG-----GCCAAACTGAGGAAAACA-TGATCAGAGACGAGATGGTGTCAGAGGCAAGAG--GCTGCTGGTTG-GATTTGCACTTT-GTTTCCAAAAGCATTTGAATAG-TTTTAAGACATGTAAACTGTGAGACTAGACAATTTCACTTAGAAAATGAAGCGTCTGCATGCAGATATTATTCTCATGAGGATACATATCTGCATCTGTTTGTCAATGAGGGCTCCCATGCAGTGTCAGA----CAT--ACAAGACCTGGGTTCCATTGGCTTT-TATGCACATACATGGCTAAATGTATATAG---GGATGTATAATTAAAGATTTTAAACATTTGATTTTGACAGTATATTTTGCAGCTGCTGTGCTAAGAAAATTCCTAAGCTACTGTGGGTTAATG-GGAGTTGTAGCAACTATTTCCTTCTCGGCTG-TCTCTTTTAGCAAAG------CTCCTCTCTCTCTCTCTTTTAGCAAAGCTCTTCTCTCTCTCTCTTTTAGCAAAGCTCTTCTCTCTCTCT----------------------------------------------------------------------CTTTTAGCAAAGCTCCTCTCTCTCTCTCTTTTAGCAAAGCTCCTctctctctctcgtctctctctcttcctcctctccgtctccc-----ccctccctgcctgcctgcctctgcccgtccctccctccct----------ccctctctctc i calJac3.chr19 C 0 C 0 s mm10.chr1 178797068 1217 + 195471971 TCTTGACCATTCCTTCTCAGGTTTG-----GGGCCTGCACCTTTC-TAAATGCCCACATTCCCGTAGGAGTGCCATTA-GACGTCTACCCTCACCATGAACT-GATTCATTCACCCATTTACT----GAACACCGAGAA------GAGCCTGCCGGCTCTAGCCTACCTGC---AGATC-ACTGACGGAGCTTGTTAAAGGCTCAAGTCCAGTCTC-TGGAAGCTATTCAAAATTTGGAGAAGAAGGT------------------------------CCAGGCATTCAGAGTTCTAACACATTGCCACTAGTGGTTCCTAAGGCAGTACTGTGAGGACCCATG--GAAACACAAG-GAAGGAATGTCTTGTAATGGA-AGAGAGAGTGGTAAAGACCCCTAGAGAACCAACCT-------GCTGGTTCTCCTTACCTGGATCACCAAGACACTTCCTCCT----------G----GTCCCACCCCTGCCAGTCCCTCT----GGTCTCACCCACCCTCCAG----TCTGAAACACTCACTTGTGTGTGCACATACCTCCCCTCC---CCCTACACCAT-------------------------GTCTCCAAGTACCTGCTCAGGGCCAGTCTTTCCTGC---AGGTCTACTCAGTGCCTTGCC--GATGGGTGGAACATCCTGAGTAGCCATAGTCACT--CAGTGAAGAACAGCAGGTAAAGTTAAGTATTTCAATGTGACCT------TTGCTTGGCTTCTGCACTCT------T------TCTGTCAACTACTT--------CAGGGGGA---------GAACGCAG-----------CAGGGAAAAGCA-GAGTTGAAGACAAA-----GTCTAAGGCAGGAG--GCTGCTCTTCTCTGCATGCATTTCCATTACCAGCAGCACCTGAACAATTTTTAAGACAGGTTAACTGTGAGCCTGGTCACCTCTACTCA-CTAATGAAATCTGTGCCTGTAGCTCTTTCTCCCCTGGGGACCCACATCTG----TGTATGTCTACAAATGTCCTCCCATAGAGTCTCACACATATGCACAGAACCTTGGTATGGCCGGCTCTGTCTGAACACACATGACTCAACATGTACAT---GGGTATGTAATTAAAGATTTTGAACACTTGGTTTTGATGGTCTGTTTTCCAGGGGTCTTGTTCAGAAGATTCCTGAGCTACTATGGGCTAAGGAAGAGTTGCAGCAAGTGT----TTTTCGGCTG--CTCTTTCTGTAAAGTGCCctctcttctctctctctc---------------tctctctctctc---------------tctctctctct---------------------------------------------------------------------------------------ctctctctct-------------ctctctctctctct------------------------ctctccctccctccctccctctctccctccctctctccctccctccctcc------------ctccctccctc i mm10.chr1 I 439 I 122 s canFam3.chr7 36362698 1224 + 80974532 CTGTGATCCCTCCCTCCTGGTGGCACCACCACTGTTCTGGCCCTA--------TGGTGTTCTCACAGGTGTTCCATTAGCATCTCTACTCACTTTGTTTAGTCT-TTCATTCATTCATCTGCTCACCCAACACTGTCGAAGAAATAAGCCTTTGGaaact--tcagcctgcatcagaatcacctgtggagcttgttaaaatgcagattctggcccctacaggctcagtcatcatctttggggtggggttgcggggtccacattgtggacatgctgtcaccaggtatgtctagcacaggtg----------------------------gtcaggatcacatttagagaaATACA-GTGAATGGGTTCCTTGTATGGAGAAGGGAGGGTTGCAGAGAACA-TGAGGAATCAGTGGTAGATGGTCTTGTGCTATCCAC------GGTCATGGTCGCCCCTCCAGCGTGTGCTGAGACTTTCTTGCCTCTACCTTTCTGCCTCAGCTCCCCTTTGCTGCCTTTG------CTG------TCACTTCTTTCTCCCCCCAGGCCACCACCTGTTCCCTTGCTGTCGCAGAGCTCCCCCACCCCCCATGTGTCT-CATGTCCCTGCTCCATGCTATCTCCCTCCTCCCGGGACATGATCTCTGCCTTGGC----TCTGCCCAGCGTCC-AGGCTGCGCT-GCCACAAACAATGGGGTG--GCATGCAAAATGGACAGTCACTTTGAAAGCCTCCCCCCCCCCTCACCTCTCTATTCTCTATTCTCTTCTCTTTGAGGG----TTTCCTGAGGCAAGGAAAAAGACACAGGGACACCTCCC--TCCAGAATGAGGGAAGAAGCGATTGGAGATAA--------CGGAGGCAAGGGGCGCTGGTTGTCT-GATTTGC--TTCCATTACCGAGAGCATTTGAATAG-TTTGAAGACGTGTAAACTGTGAGCCTAG-TATTTTCACT--------GAAATATATGCATGGAGATATTATCCTCCTGGGGACATATGCCTGCATCTGTTTGTCTACAAGTATTTACTT--------------------GCAGAACCTTGGTTCTGTCGGCTTTGTCTGCA---------CCAAATGGGTATAACTTGGATGTATAATTAAAGATTTTAAACACTTGATTTTGATCATCCGTTTTGCAGCTGCCGTGCTCAGAAAATGCCTAAGCTTCTGTGGGTTAATG-GGAGTTCCAGCAAGTGTTTCTGTCTCTCCTGGTCTCTATTAGTAAAG------CT-----------------------------CCTCTCT--------------------tccctgcctct---------------------------------------------------------------------------------------ctgcctctct-------------cc------------------------------------------------ccctccctccccgcctgcctctgctcttccctcc----------------ctcccGC---- i canFam3.chr7 C 0 C 0 a score=1031499.000000 s hg38.chr1_KI270759v1_alt 204989 237 + 425601 tctcTGAGATAGCAGACACCAGA--GTGAAACTGGTGCAGCTTCCTTTGAG----AAGCGTGCTTGCATGTGCGGATTGGCAGGATTGTGTG-AGCTCCTC-----TCCCATCCATGCACTGTTCTTGGAGGGAAATGCAATGTTGGAGCAGGGGCTGAGCTGCACTGGGAAGGTGGCTGGGAGCTCAGTGAGGCCAGGATCATGGTTTAGCCAAAGGCTGGAATCACAAGAATGTTTCACCAGGGTCT s panTro4.chr1 224958624 237 + 228333871 tctctGAGATAGCAGACACCAGA--GTGAAACTGGTGCAGCTTCCTTTGAG----AAGCGTGCTTGCATGTGCGGATTGGCAGGATTGTGTG-AGCTCCTC-----TCCCATCCATGCACTATTCTTGGAGGGAAATGCAATGTTGGAGCAGGGGCTGAGCTGCACTGGGAAGGTGGCTGGGAGCTCAGTGAGGCCAGGATCATGGTTTAGCCAAAGGCTGGAATCACAAGAATGTTTCACCAGGGTCT i panTro4.chr1 C 0 I 794 s ponAbe2.chr1 226316490 237 - 229942017 tctctGAGATAGCAGACACCAGA--GTGAAACTGGTGCAGCTTCCTCTGAG----AAGTGTGCTTGCATGTGCGGACTGGCAGGATTCTGTA-AGCTCCTC-----TCCCATGCATGCACTGTTCTTGGAGGGAAATGCAATGTTGGAGCAGGGGCTGAGCTGCACTGGGAAGGTGGCTGGGAGCTCAGTGAGGCCAGGATCATGGTTTAGCCAAAGGCTGGAATCACAAGAATGTTTCACCAGGGTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140206462 237 - 143122389 tctcTGAGATAGCAGACACCAGA--GTGAACCTGGTGCAGCTTCCTCTGAG----AAGCGTGCTTGCCTGTGCGGCTTGACAGGATTCTGTG-AGCTCCTC-----TCCCACCCATGCACTGTTCTTGGAGGGAAATGCGATGTTGGAACAGGGGCTGAGCCGCACTGGGAAGGTGGCTGGGAGCTCAGTGAGGCCAGGACCATGCTTTAGCCAAAGGCTGGAGTCACAAGAATGTTTCACCAGGGTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16920988 237 - 229590362 tctcTGAGATAGCAGACACCAGA--GCGAAACTGGTGCAGCTTCCTCTGAG----AAGCGTGCTTGCATGTACAGATTGGCAGGATTCTGTG-AGCTCCTC-----TCCCATCCATGCCCTGTTCTTGGAGGGAAATGCAATGTTGGAGCAGGGGCTGATCTGCACTGGGAAGGTGGCTGGGAGCTCAGTGAGGCCAGGATCATGGTTTAGCCAAAGGCTGGAATCACAAGAATGTTTCACCAGGGTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223684198 237 - 227556264 tctcTGAGATAGCAGACACCAGA--GCGAAACTGGTGCAGCTTCCTCTGAG----AAGCGTGCTTGCATGTACAGATTGGCAGGATTCTGTG-AGCTCCTC-----TCCCATCCATGCCCTGTTCTTGGAGGGAAATGCAATGTTGGAGCAGGGGCTGATCTGCACTGGGAAGGTGGCTGGGAGCTCAGTGAGGCCAGGATCATGGTTTAGCCAAAGGCTGGAATCACAAGAATGTTTCACCAGGGTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16734473 237 - 220367699 tctctgagataGCAGACACCAGA--GCGAAACTGGTGCAGCTTCCTCTGAG----AAGCGTGCTTGCATGTACAGATTGGCAGGATTCTGTG-AGCTCCTC-----TCCCATCCATGCCCTGTTCTTGGAGGGAAATGCAATGTTGGAGCAGGGGCTGATCTGCACTGGGAAGGTGGCTGGGAGCTCAGTGAGGCCAGGATCATGGTTTAGCCAAAGGCTGGAATCACAAGAATGTTTCACCAGGGTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82532776 237 + 85787240 tctcTGAGATAGCAGACACCAGA--GCGAAACTGGTGCAGCTTCCTCTGAG----AAGCGTGCTTTCATGTACAGATTGGCAGGATTCTGTG-AGCTCTTC-----TCCCATCCATGCCCTGTACTTGGAGGGAAATGCAATGTTGGAGCAGGGGCTGATCTGCACTGGGAAAGTGGCTGGGAGCTCAGTGAGGCCAGGATCATGGTTTAGCCAAAGGCTGGAATCACAAGAATGTTTCACCAGGGTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14214206 237 - 49578535 tctctcAGATAGCAGACACCAGA--GAGAAAGTGGTGCGGCTTCCTCTGAG----AAGTGTGCTTGCATGCGCGGATTGGCAGGATTCCGCG-AGTTCCTC-----TCCCATCCATGCCCTGTTCTTGAAGGGAGATGCAATGTTGGAGCAGGGGCTGAGCTGCACTGGGAAGGTGGCTGGGAGCTCAGGGAGGCCAGGATCTTGGTGTAGCCAAAGGCTGGAATCACAAGAATGTTTCACCAGGGTCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178798407 245 + 195471971 TCTCTGAGATAGCAG----CAGACCGAGAGGCTGGTGCAGCGTGCTCTGGGGAAAGAGTGAGCTTGCTTGCAGAGACTGGCAGCATTTCAGGCAGCTCCTCTTGCATCCCATCCATGCGGTGTTCTTGGAGGGCAATGCAATGTTGGAGCAGGGATTGACCTGCACCGGGAGGGTAGCTGGTTGCTCAGAGAGGCCAGGGTCTTGGCTTAGCCAGAGGCTGGAATCACAGGAATGCTGTAGCAGGGTCT i mm10.chr1 I 122 C 0 s canFam3.chr7 36363922 233 + 80974532 --TCCGAGATAGCAGACA--AGA--GAGGAACTGGTGCAGCTTCCCCTGAG----AAGCGTGCTTGCATGCGCGGATGGGCAGGATCCCGTG-AGTTCCTC-----TGCCATCGATGCCTTGTGCTTGGAGGGAAATGCAATGTTGGAGCAGGGGCTGAGCTGGACTAGAAAGGTGGCTGGGAGCTTGGGGAGGCCCGGATCCTGGGTTAGCCTCAGGCTGGAATCACAGGAATGTTTCACCGGGGTCT i canFam3.chr7 C 0 C 0 a score=813259.000000 s hg38.chr1_KI270759v1_alt 205226 220 + 425601 GCTCTGAGAGTTCTCAGACCCCCATGGATTTTAGAATTTTCCAGCCTTTCCTCCTTCACCTTCGCACAATTTTACTTTCTCCTGAGATGGCCCCAGATCTGCAAGAGACATTTGAGAGAAGCTATTTATTAGCAGACGTGAAGAAATGGATTCTGCACTTGATTATTTAGCCATGACTTATCAATGATGATGGATTGGAAAGCAGTGTAAGT----AACGCAGT s ponAbe2.chr1 226316727 220 - 229942017 GCTCTGAGAGTTCTCAGACCCCTATGGATTTTAGAATTTTCCAGCCTTTCCTCCTTCACCTTCGCACAATTTCACTTTCTCCTGAGATGGCCCCAGATCTGCAAGAGACATTTGAGAGAAGCTATTTATTAGCAGACGTGAAGAAATGGATTCTGCACTTGATTATTTAGCCATGACTTATCAATGATGATGGATTGGAAAGCAGTGTAAGT----AACGCAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140206699 220 - 143122389 GCTCTGAGAGTTCTCAGACCCCCATGGATTTTAGAATTCTCCAGCCTTTCCTCCTTCACCTTCGCACAATTTTACTTTCTCCTGAGATGGCCCCAGATCTGCAAGAGACATCTGAGAGAAGCTATTTATTAGCAGACGTGAAGAAATGGATTCTGCACTTGATTATTTAGCCATGACTTATCAATGATGATGGATTGGAAAGCAGTGTAAGT----AACGCAGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16921225 220 - 229590362 GCTCTGAGAGTTCTCAGACCCCCATGGATTTTAGAATTTTCCAGCCTTTTCTCCTTCACCTTCGCACAATTTTACTTTCTCCTGAGATGGCCCCAGATCTGCAAGACACATTTGAGAGAAGCTATTTATTAGCAGACGTGAAGAAATGGATTCTGCGCTTGATTATTTAGCCATGACTTATCAGTGATGATGGATTGGAAAGCAGTGTAAGT----AACACAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223684435 220 - 227556264 GCTCTGAGAGTTCTCAGACCCCCATGGATTTTAGAATTTTCCAGCCTTTTCTCCTTCACCTTCGCACAATTTTACTTTCTCCTGAGATGGCCCCAGATCTGCAAGACACATTTGAGAGAAGCTATTTATTAGCAGACGTGAAGAAATGGATTCTGCGCTTGATTATTTAGCCATGACTTATCAGTGATGATGGATTGGAAAGCAGTGTAAGT----AACACAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16734710 220 - 220367699 GCTCTGAGAATTCTCAGACCCCCAtggattttagaatttttcagccttttctccttcaccttcgCACAATTTTACTTTCTCCTGAGATGGCCCCAGATCTGCAAGACACATTTGAGAGAAGCTATTTATTAGCAGATGTGAAGAAATGGATTCTGCACTTGATTATTTAGCCATGACTTATCAGTGATGATGGATTGGAAAGCAGTGTAAGT----AACACAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82533013 220 + 85787240 GCTCTGAGAGTTCTCAGACCCCCATGGATTTTAGAATTTTCCAGCCTTTTCTCCTTCACCTTCGCACAATTTTACTTTCTCCTGAGATGGCCCCAGATCTGCAAGAGACGTTTGAGAGAAGCTATTTATTAGCAGTCGTGAAGAAATGGATTCTGCACTTGATTATTTAGCCATGACTTATCAATGATGATGGATTGGAAAGCAGTGTAAGT----AACACAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14214443 219 - 49578535 GCTCTGAGAGTTCTCAGACCCCCATGGA-TTTAGAATTTTTCAGCCTTTTCTCCTTCATCTTTGCACAATGTTACTTTCTCCTGAGATGGCCCCAGATCTGCAAGAGACATTTGAGAGAAGCTATTTGTTAGCTGACATGAAGAAATGGATTCTGCACTTGATTATTTAGCCATGATTAATCAATGATGATGGATTGGAAAGCAGTGTAAGT----AACACAGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178798652 221 + 195471971 GCTGTGAAAGTTCCCAGACCCCCATGGATTTTAGAATTTCCCAGC---TTCTTCTGCACCTCAGCACACTCTCACTTCCTCCCGAGATGGCCCCAGATCTGCAGGAGACACTTGAGAGAAGCTATTTATTAGCAGTCGCGAAGAGACGGATTCTGCGCTTGGTTCTTTAGCCATGATTTATCAGTGATGATGGATTGGCCAGCGGTGTGAGTAATGAATGCACT i mm10.chr1 C 0 C 0 s canFam3.chr7 36364155 218 + 80974532 GCCCTGAGCATTCCCAGACCCCCATGGATTTCAGAATTCCCCAGCCTTTTCTCCTTTACCTTCGCTCTATCTTACTTCCTCCTGAGATGGCCCCAGATCTGCAAGAGACATTTGCAAGGAGCTATTTACTAACAGATGTGAAGAAATGGATTCTGCACTTGATTATTTAGCCATGATTTATCAATGATGATGGATTGGAAAGCAGTGTAAGT----AACAGC-- i canFam3.chr7 C 0 C 0 e panTro4.chr1 224958861 794 + 228333871 I a score=6665197.000000 s hg38.chr1_KI270759v1_alt 205446 1789 + 425601 TATATATGTTGCTGGAGTTAGGTGGTCTGTT--------TTCT-TGCTAttttttttt--tactttaactttttcagt----ttccttttGAGAAAAGTAAAAATAAAATGC--ATAAACCATTTCAAAGAAGTTAGGAGGGTCCAGGTTG-TGCAAGCTTTCTTCTTGTTCAATGGACTTGCAGAATACCT---AGTTCTATCAGAAGAGACACACAAACTACCGACATAGAAGCTACAAACATCCTCCGGAGGATGGGAATGAAATGGGTAATAAATGAAGAAGGTTTCTGAACTGACAGTCATTGCTATAATCAGGCTTATTCAGAGTTGCTAAAATATTTGACATTGGCTCATATTAGAATCAA----AGAACTAAAATGTATTCTCTTTACAGGATCATAAAAATGAAGTTAGCCTGTGGCTTTCAGAGCAGGTTCTTTCTGGCTGCGTAAATGTGAGGGTT-----tt---------tgtttgtttgtttgtttgtttggttttgttttttAA---------CTAAT-GTCAAATGTTGACTATGTTTCCTGTCCATTTCAACTTTTCTTGAGGTCGGACATCTCCCTATTCTAGAGTACAATGTCTGGTCACTCTTGGGTTGCAGGCCACTGTCTAGTGGAAAGCTAGTCATTGCTAGTTTATACCAGTCAGAGACTTTTCCATC-TTTCTGTGTG----AGGGCTTCGTTTAAGCACTTCAATTCCTAAGTATTC-AGGGAGGAAAAACAAGTCACTTGAAGACCAAAATCAGTTTA-TTTCACAAGAGAAAGGAACGGCTATTTAAAAGATGAAAAATTGAAATTTAAAAATATGATCTGCCTTTTCTTCAAAATCTGAAGTGAGGTTAATTTTGTGTAGGAAGAGTAACATAAGCTTTCTTGATTAAAAAGCAGTATTT-AGAGGAGGCTTTTAAGATCATAAATCAC---TTAGGTAAG---GTCATCAAAAGAGA----------------TGGCTGAT-ATTTTTTATGGTCATTTGCAACT-TTTTAAAAAAAGTCCATACGGTAATGTTAATGCAGCTATTTCTGGCTTCTTAAAACTTGCATAGATTTGGAAGTGGGATTTCTAACAATAAGA--GTCGTGAGTTTTTCTGAGCTATCATTGCCTTTCTCTGTCTATCACATTCATACCTCAGGCAGAGCTACTGTC--CCTCCCACCTGTCCA---CCCTGCCTGTTTCCCAGCCCCCATCCTTCTCTCTGAGTCTTGGAACATCATGAAAGACTCTTCTGCAGATTTCCTTTTAACATACCCTGCCCAGCCTTGGACAGAGGGAGTACTGT----GAAGCAACATGCAGGGCTGCCAATTTTGGAAATGAATGAGCTTAGTTGATTCCTGAATATTAAATCAGTTCTGTGAGCAGTAGAATGAGATCATATCTTACAAACCTGACCCAAAGTGTTCCTAACAACTTTATTAATTGGGGTTTAACATCATCAAGGGCTGTAGCACTGGGCACCCGAGGGGATCAGCCTAAACCCAAATGAAATCCCCAAACTCCACTCGGATTCCTGC-TGGCCAAATGCACCTAGGGCCACGCCTTCTAAAATATGTCCTTTGTTATCAAGGGAAATCTGAGACAGAAAACACATGTTGGCAGCATCATGTGAGCGCCTCTCTGCACATAAAGTGGTTGTATCACAAGGGG--AAAGCTTTCGATCTTGT--GCCGTTTTGTTTTGG-TTTCTTGTTTATGTGGACTCTGTTAGACTCCTGCATCTGGAAGAGGCTTGAAGCAGAGTG----GAAAACCTAGAGCAAAAATCATGCCGGGGAAAGGAAAATCATTAAAAAACAATGACTAAAAAC-------------AGAATAATTTTCTTACCC s panTro4.chr1 224959655 1787 + 228333871 TATATATGTTGCTGGAGTTAGGTGATCTGTT--------TTCT-TGCTATTTTTTTTT---ACTTTAACTTTTTCAGT----TCCCTTTTGAGAAAAGTAAAAATAAAATGC--ATAAAGCATTTCAAAGAAGTTAGGAGGGTCCAGGTTG-TGCAAGCTTTCTTCTTGTTCAATGGACTTGCAGAATACCT---AGTTCTATCAGAAGAGACACACAAACTACCGACATAGAAGCTACAAACATCCTCCGGAGGATGGGAATGAAATGGGTAATAAATGAAGAAGGTTTCTGAACTGACAGTCATTGCTATAATCAGGCTTATTCAGAGTTGCTAAAACATTTGACATTGGCTCATATTAGAATCAA----AGAACTGAAATGTATTCTCTTTTCAGGATCATAAAAATGAAGTTAGCCTGTGGCTTTCAGAGCAGGTTCTTTCTGGCTGCGTAAATGTGAGGGTT-----TT---------TGTTTGTTTGGTTGGTTGGTTGGTTTTGTTTTTTAA---------CTAAT-GTCAAATGTTGACTATGTTTCCTGTCCATTTCAACTTTTCTTGAGGTCGGACATCTCCCTATTCTAGAGTACAATGTCTGGTCACTCTTGGGTTGCAGGCCACTGTCTGGTGGAAAGCTAGTCATTGCTAGTTTATATCAGTCAGAGACTTTTCCATC-TTTCTGTGTG----AGGGCTTGGTTTAAGCACTTCAATTCCTAAGTATTC-AGGGAGGAAAAACAAGTCACTTGAAGACCAAAATCAGTTTA-TTTCACAAGAGAAAGGAACGGCTATTTAAAAGATGAGAAATTGAAATTTAAAAATATGATCTGCCTTTTCTTCAAAATCTGAAGTGAGGTTAATTTTGTATAGGAAGAGTAACATAAGCTTTCTTGATTAAAAAGCAGTATTTTAGAGGAGGATTTTAAGATCATAAATCAC---TTAGGTAAG---GTCATCAAAAGAGA----------------TGGCTGAT-ATTTTTTATGGTCATTTGCAACT-TTTTTAAAAAAGTCCATACGGTAATGTTAATGCAGCTATTTCTGGCTTCTTAAAACTTGCATAGATTTGGAAGTGAGATTTCTAACAATAAGA--GTCGTGAGTTTTTCTGAGCTATCATTGCCTTTCTCTCTCTATCACATTCATACCCCAGGCAGAGCTACTGCC--CCTCCCACCTGTCCA---CCCTGCCTGTCTCCCAGCCCCCATCCTTCTCTCTGAGTCTTGGAACATCATGAAAGACTCTTCTGCAGATTTCCTTTTAACATGCCCTGCCCAGCCTTGGACAGAGGGAGTACTGT----GAAGCAACATGCAGGGCTGCCAATTTTGGAAATGAATGAGCTCAGTTGATTCCTGAATATTAAATCAGTTCTGTGAGCAGTAGAATGAGATCATATCTTACCAACCTGACCCAAAGTGTTCCT---AACTTTATGAATTGGGGTTTAACATCATCAAGGGCTGTAGCACTGGGCACCCGTGGGGATCAGCCTAAACCCAAATGAAATCCCCAAACTCCACTCGGATTCCTGC-TGGCCAAATGCACCTAGGGCCACGCCTTTTAAAATATGTCCTTTGTTATCAAGGGAAATCTGAGACAGAAAACACATGTTGGCAGCATCACGTGAGCGCCTCTCTGCACATAAAGTGGTTGTATCACAAGGGG-AAAAGCTTTCGATCTTGT--GCCGTTTTGTTTTGG-TTTCTTGTTTATGTGGACTCTGTTAGACTCATGCATCTGGAAGAGGCTTGAAGCAGAGTG----GAAAACCTAGAGCAAAAATCATGCCGGGGAAAGGAAAATCATTAAAAAACAATGACTGAAAAC-------------AGAATAATTTTCTTACCC i panTro4.chr1 I 794 C 0 s ponAbe2.chr1 226316947 1792 - 229942017 TATATATGTTGCTGGAGTTAGGTGGTCTGTT--------TTCT-TGCTATTTTTTTTT-TTACTTTAACTTTTTCAGT----TTCCTTTTGAGCAAAGTAAAAATAAAATGT--ATAAAGCATTTCAAAGAAGTTAGGAGGGTCCAGATTG-TGCAAGCTTTCTTCTTGTTCAGTGGACTTGCAGGATACCT---AGTTCTATCAGAAGAGACCCACAAACTACCGACATAGAAGCTACAAACATCCTCCGGAGGATGGGAATAAAATGGGTAATAAATGAAGAAGGTTTCTGAACTGACAGTCATTGCTATAATCAGGCATATTCAGAGTTGCTAAAATATTTGACGTTGGCTCATATTAGAATCAAAGACAGAACTGAAATGTATTCTCTTTACAGGATCATAAAAATGAAGTTAGCCTGTGGCTTTCAGAGCAGGTTCTTTCTGGCTGTGTAAATGTGAGGGTT-----TT---------TGTTTGTTTGGTTGGTTGGTTGGTTTTGTTTTTTAA---------CTAAT-GTCAAATGTTGACTATGTTTCCTGTCCATTTCAACTTTTCTTGAGGTTGGACATCTCCCCATTCTAGAGTACAATGTCTGGTCACTCTTGGGTTGCAGGCCACTGTCTAGTGGAAAGCTAGTCATTGCTAGTTTATACCAGTCAGAGACTTTTCCATG-TTTCTGTGTT----AGGGCTTGGTTTAAGCACTTCAATTCCTAGGTATTC-AGGGAGGAAAAACAAGTCACTTGAAGACCAAAATCAGTTTA-TTTCACAAGAGAAAGGAACAGTTATTTAAAAGATGAGAAATTGAAATTTAAAAATATGATCTGCCTTTTCTTCGAAATCTGAAGTGAGGTTAATTTTGTATAGGAAGAGTAACATAAACTGTCTTGATTAAAAAGCAGTATTTTAAAGGAGGCTTTTAAGATCATAAATCAC---TTAGGTAAG---GTCATCAAAAGAGA----------------TGGCTGAT--TTTTTTGTGGTCATTTGCAACT-TAAAAAAAAAAGTCCATGCAGTAATGTTAATGCAGCTATTTCTGACTTCTTAAAACTTGCATAGATTTGGAAGTGGGATTTCTAACAATAAGA--GTCATGAGTTTTTCCGAGCTATCATTGCCTTTCTCTCTCTATCACATTCATACCCCAGGCAGAGCTACTGCC--CCTCCCACCTGTCCA---CCCTGCCTGTCTCCCAGCCCCCATCCTTCTCTCTGAGTCTTGGAACATCATGAAAGACTCTTCTACAGATTTCCTTTTAAAATGCCCTGCCCAGCCTTGGACAGAGGGAGTACTGT----AAAGCAACATGCAGGGCTGCCAATTTTGGAAATGAATGAGCTCAGTTGATTCCTGAATATTAAATCAGTTCTGTGAGCAATAGAATGAGATCATATCTTACAAACCTGACCCAAAGTGTTCCT---AACTTTATTAATTGGGGTTTAACATCATCAAGGGCTGTAGCACTGGGCACCCGAGGGGATCAGCCTAAAGCCAAATGAAATCCCCAAACTCCACTCGGATTCCTGC-TGGCCAAATGCACCTAGGGCCACGCCTTTTAAAATATGTCCTTTGTTATCAAGGGAAATCTGAGACAGAAAACACATGTTGGCAGCACCACGTGAGCACCTCTCTGCACATAAAGTGGTTGTATCACAAGGGG-AAAAGCTTTCGATCTTGT--GCCGTTTTGTTTTGT-TTTCTTGTTTACGTGGACTCTGTTAGACTCCTGCATCTGGAAGAGGCTTGAAGCAGAGTG----GAAAACCTAGAGCAAAAATCATGCCGGGGAAAGGAAAATCATTAAAAAACAATGACTAAAAAA-------------GGAAGAATTTTCTTACCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140206919 1754 - 143122389 TATATATGTTGCTGTAGTTAGGTGTCCTGTT--------TTCT-TGCTATTATTTTTT--------AACTTTTTCAGT----TTCCTTTTGAGAAAAGTAAAAATAAAATGT--ATAAAGCATTTCAAAGAAGTTAGGAGGGTCCAGATTG-TACGA-----------------TGGTCTTGCAGAATACCT---AGTTCTATCAGAAGAGACACACAAACTACCGACATAGAAGCTACAAACATCCTCCAGAGGATGGGAATAAAATGGGTAATAAAT---GAAGGTTTCTGAACTGACAGTCATTGCTATAATCAGGCTTATTCAGAGTTGTGAAAATATTTGACATTGGCTCATATTAGAATCAAAGACAGAACCGAAATGTATTCTCTTTACAGGATCATAAAAATGAAGTTAGCCTGTGGCTTTCAGAACAGATTCTTTCTGGCTGCGTAAATGTGAGGgttttttgtt---------tgtttgtttgtttgtttgttttgttttgtttTTTAA---------CTAAT-GTCAAATGTTGACTACGTTTCCCATCCATTTCAACTTTTCTTGAGGTTGGATATCTCCCCATTCTAGAGTACAATGTCTGGTCACTCTTGGGTTGCAGGCCACTGTCTAGTGG-AAGCTAGTCATTGCCAGTTTATACCAGTCAGAGACTTTTCCATC-TTCCTGTGTG----AGGGCTTGGTTTACGCACTTCAATTCCTAAGTATTC-AGGGAGGAAAAACAAGTCACTTGAAGACCAAAATCAGTTTA-TTTCACAAGAGAAAGGAACAGCTATTTAAAAGATGAGAAATTGAAATTTAAAAATATGATCTGCCTTTTCTTCGAAATCTGAAGTGAGGTTAATTTTGTATAGGAAGAGTAACATAAGCTTTCTTGATTAAAAAGCATTACTTTAAAGGAGGCTTTTAAGAACATAAATCAC---TTAGGTAAG---GTCATCAAA--AGA----------------TGGCTGAT-ATTTTTTAGGGTCATTTGCAACT-TTTTAAAAAAAGTCCATACAGTATTGTTAATGCAGCTATTTCTGACCTCTTAAAACTTGCATAGATTTGGAAGTGAGATTTCTAACAATAAGA--GTCATGAG-------------TCATTGCCTTTCTCTCTCTATCACATTCATACCCCAGGCAGAGCTACTGCC--CCTCCCACCTGTCCA---CCCTGCCTGTCTCCCAGCCCCCATCCTTCTCTCTGAGTCTTGGAACATCATGAAAGACTCCTCTACAGATTTCCTTTTTACATGCCCTGCCCAGCCTTGGACAGAGGGAGTACTGT----AAAGCAACATGCAGGGCTGCCAATTTTGGAAATGAATGAGCTCAGTTGATTCCTGAATATTAAATCAGTTCTGTGAGCAGTAGAATGAGATCATATCTTACAAACCTGACCCAAAGTGTTCCT---AACTTTATTAATTGGGGTTTAACATCATCAAGGGCTGTAGCACTGGGCACCTGAGGGGATCAGCCTAAAGCCAAATGAAATCCCCAAACTCCCCTCGGATTCCCGC-TGGCCAAATGCACCTAGGGCCACGCCTTTTAAAATATGTCCTTTGTTATCAAGGGAAATCTGAGACAGAAAACACATGTTGGCAGCATCACGTGAGCACCTCTCTGCACATAAAGTGGTTGTATCACAAGGGG-AAAAGCTTTCGATCTTGT--GCCGTTTTGTTTTGG-TTTCTTGTTTACGTGGACTCTGCTACACTCATGCATCTGGAAGAGGCTTGAAGCAGAGTG----GAAAACCTAGAGCAAAAATCATGCCGGGGAAAGGAAAATCATTAAAAAACAAAGACTAAAAAA-------------GGAATAA-TTTCTTACCC i nomLeu3.chr5 C 0 M 2629 s rheMac3.chr1 16921445 1787 - 229590362 TATATATGTTGCTGTAGTTAGGTGGTCTGTT--------TTCT-TGCTAGTTTTTTCT---ACTTTAACTTTTTCAGT----TTCCTTTTGAGAAAAGTAAAAATAAAATGT--ATAAAGCATTTCAAAGAAGTTAGGAGGTTCCAGATTG-TACGAGCTTTCTTCTTGTTCAGTGGACTTGCAGAATACCT---AGTTCTATCAGAAGAG--ACACAAACTACTGACATAGAAGCTATAAACATCCTCCGGTGGATGGGAATAAAATGGGCAATAAAGGAAGAAGGTTTCTGAACTGACAGTCATTGCTCTAATCAGGCTTATTCAGAGTTGCTGAAATATTTGACGTTGGCTCATGTTAGAATCAAAGACGGAACCGAAATGTATTCTCTTTACAGGATCATAAAGATGAAGTTAGCCTGTGGCTTTCAGAACAGGTTCTTTCTGGCTGCACAAATGTGAGGGt-----------------tgtttgtttgtttgtttgtttTGTTTTGTTTTTTAA---------CTAAT-GTCAAATGTTGACTACGTTTCCCGTCCATTTCAACTTTTCTTGAGGTTGGACATCTCCCCATTCTAGAGTACAATGTCTGGTCACTCTTGGGTTGCAGGCCACTGTCTAGTGGAAAGCTAGTCATCGCTAGTTTACACCAGTCAAAGACTTTTCCATC-TTTCTGTATG----AGGGCTCGGTTTAACCACTTCAATTCCTAAGTATTC-AGGGAGGAAAAACAAGTCACTTGAAGACCAAAATCAGTTTA-TGTCACAAGAGAAAGGAACAGCTATTTAAAAGATGAGAAATTGAAATTTAAAGATATGACCTACCTTTTCTTCGAAAGCTGAAGTGAGGTGAATTTTGTATCGGAAGAGTAACATAAGCTTTCTTGATTAAAAAGCAGTATTTTAAAGGAGGCTTTTAAGATCACAAATCATTCTTTTGATAA----GTCATCAAAAGAGA----------------TGGCTGAT-ATGTTTTATGGTCATTTGCAAC--TTTTTTTAAAAGTCCGTACTGTAATGTTAATGCAGC-ATTTCTGGCTTCTTAAAACTTACATAGATGTGAAAGTGGGATTTCTAACAATAACA--GCCATGAGTTTTTCTGAGCTATCATTGCCTTTCTCTCTCTATCACATTCATACCCCAGGCAGAGCTACTGCC--CCTCCTACCTGTCCA---CCCTGCCTGTCTCCCAGCCCCCATCCTTCTCTCTGAGTCTTGGAACATCATGAAAGCCTCTTCTACAGATTTCCTTTTAATGTGCCCTGCCTAGCCTTGGACAGAGGGAGCACTGT----AAAGCAACATGCAGGGCTGCCAGTTTTGGAAATGAATGAGCTCAGTTGATTCCTGAATATTAAATCAGTTCTGTAAGCAGTAGAATGAGATCATATCTTACAAACCTGACCCAAAGTGTTCCT---AACTTTATTAATTGGGGTTTAACATCATCAAGGGCTGTAGCACTGGGCACCCGAGGAAATTAGCCTAAGGCCAAATGAAATCCCCAAACTCCACTCAGATTCCTGC-TGGCCAAATGCACCTAGGGCCACGCCTTTTAAAATATGTCCTTTGTTATCAAGGGAAATCTGAGACAGAAAACACATGTTGGCAGCATCACGTGAGCGCCTCTCTGCACATAAAGTGGTTGTATCACAAGGGGGAAAAGCTTTCGATCTTGT--GCTGTTTTGTTTTGG-TTTCTTGTTTACGTGGACTCTGTGAGACTCATGCATCTGGAAGAGGCTTGAAGCAGAGTG----GAAAACCTAGAGCAAAAATCATGCCGGGGAAAGGAAAATCATTAAAAAACAAAGACTAAAAGA-------------GGAATAATTTTCTTACCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223684655 1789 - 227556264 TATATATGTTGCTGTAGTTAGGTGGTCTGTT--------TTCT-TGCTAGTTTTTTCT---ACTTTAACTTTTTCAGT----TTCCTTTTGAGAAAAGTAAAAATAAAATGT--ATAAAGCATTTCAAAGAAGTTAGGAGGTTCCAGATTG-TACGAGCTTTCTTCTTGTTCAGTGGACTTGCAGAATACCT---AGTTCTATCAGAAGAGACACACAAACTACTGACATAGAAGCTATAAACATCCTCCGGTGGATGGGAATAAAATGGGCAATAAAGGAAGAAGGTTTCTGAACTGACAGTCATTGCTCTAATCAGGCTTATTCAGAGTTGCTGAAATATTTGACGTTGGCTCATGTTAGAATCAAAGACGGAACCGAAATGTATTCTCTTTATAGGATCATAAAGATGAAGTTAGCCTGTGGCTTTCAGAACAGGTTCTTTCTGGCTGCACAAATGTGAGGGT-----------------TttttgtttgtttgtttgttttgttttgttttTTAA---------CTAAT-GTCAAATGTTGACTGCGTTTCCCGTCCATTTCAACTTTTCTTGAGGTTGGACATCTCCCCATTCTAGAGTACAATGTCTGGTCACTCTTGGGTTGCAGGCCACTGTCTAGTGGAAAGCTAGTCATCGCTAGTTTACACCAGTCAAAGACTTTTCCATC-TTTCTGTGTG----AGGGCTCGGTTTAACCACTTCAATTCCTAAGTATTC-AGGGAGGAAAAACAAGTCACTTGAAGACCAAAATCAGTTTA-TGTCACAAGAGAAAGGAACAGCTATTTAAAAGATGAGAAATTGAAATTTAAAGATATGGCCTACCTTTTCTTCGAAAGCTGAAGTGAGGTGAATTTTGTATCGGAAGAGTAACATAAGCTTTCTTGATTAAAAAGCAGTATTTTAAAGGAGGCTTTTAAGATCACAAATCACTCTTTTGATAA----GTCATCAAAAGAGA----------------TGGCTGAT-ATGTTTTATGGTCATTTGCAAC--TTTTTTTAAAAGTCCGTACTGTAATGTTAATGCAGC-ATTTCTGGCTTCTTAAAACTTACATAGATGTGAAAGTGGGATTTCTAACAATAACA--GCCATGAGTTTTTCTGAGCTATCATTGCCTTTCTCTCTCTATCACATTCATATCCCAGGCAGAGCTACTGCC--CCTCCTACCTGTCCA---CCCTGCCTGTCTCCCAGCCCCCATCCTTCTCTCTGAGTCTTGGAACATCATGAAAGCCTCTTCTACAGATTTCCTTTTAATGTGCCCTGCCTAGCCTTGGACAGAGGGAGCACTGT----AAAGCAACATGCAGGGCTGCCAGTTTTGGAAATGAATGAGCTCAGTTGATTCCTGAATATTAAATCAGTTCTGTAAGCAGTAGAATGAGATCATATCTTACAAACCTGACCCAAAGTGTTCCT---AACTTTATTAATTGGGGTTTAACATCATCAAGGGCTGTAGCACTGGGCACCCGAGGAAATTAGCCTAAGGCCAAATGAAATCCCCAAACTCCACTCAGATTCCTGC-TGGCCAAATGCACCTAGGGCCACGCCTTTTAAAATATGTCCTTTGTTATCAAGGGAAATCTGAGACAGAAAACACATGTTGGCAGCATCACGTGAGCGCCTCTCTGCACATAAAGTGGTTGTATCACAAGGGGGAAAAGCTTTCGATCTTGT--GCTGTTTTGTTTTGG-TTTCTTGTTTACGTGGACTCTGTGAGACTCATGCATCTGGAAGAGGCTTGAAGCAGAGTG----GAAAACCTAGAGCAAAAATCATGCCGGGGAAAGGAAAATCATTAAAAAACAAAGACTAAAAGA-------------GGAATAATTTTCTTACCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16734930 1796 - 220367699 TATATATGTTGCTGTAGTTAGGTGGTCTGtt--------ttct-tgctagttttttct---actttaactttttcagt----ttccttttgagaaaagtaaaaataaaatgt--ataaagcattTCAAAGAAGTTAGGAGGTTCCAGATTG-TACGAGCTTTCTTCTTGTTCAGTGGACTTGCAGAATACCT---AGTTCTATCAGAAGAGACACACAAACTACTGACATAGAAGCTATAAACGTCCTCCGGTGGATGGGAATAAAATGGGCAATAAATGAAGAAGGTTTCTGAACTGACAGTCATTGCTCTAATCAGGCTTATTCAGAGTTGCTGAAATATTTGACGTTGGCTCATGTTAGAATCAAAGACGGAACCGAAATGTATTCTCTTTACAGGATCATAAAGATGAAGTTAGCCTGTGGCTTTCAGAACAGGTTCTTTCTGGCTGCATAAAtgtgagggtt-----ttttg------tttttgtttgtttgtttgttttgttttgttttttaa---------ctaat-GTCAAATGTTGACTACGTTTCCCGTCCATTTCAACTTTTCTTGAGGTTGGACATCTCCCCATTCTAGAGTACAATGTCTGGTCACTCTTGGGTTGCAGGCCACTGTCTAGTGGAAAGCTAGTCATTGCTAGTTTATACCAGTCAGAGACTTTTCCATC-TTTCTGTGTG----AGGGCTCGGTTTAAGCACTTCAATTCCTAAGTATTC-AGGGAGGAAAAACAAGTCACTTGAAGACCAAAATCAGTTTA-TGTCACAAGAGAAAGGAACAGCtatttaaaagatgagaaattgaaatttaaaaatatgacctACCTTTTCTTCGAAAGCTGGAGTGAGGTGAATTTTGTATCGGAAGAGTAACATAAGCTTTCTTGATTAAAAAGCAGTATTTTAGAGGAGGCTTTTAAGATCACAAATCACTCTTTTGATAA----GTCATCAAAAGAGA----------------TGGCTGAT-ATGTTTTATGGtcatttgcaact-tttttttaaaagtccgTACTGTAATGTTAATGCAGC-ATTTCTGGTTTCTTAAAACTTACATAGATGTGGAAGTGGGATTTCTAACAATAACA--GCCATGAGTTTTTCTGAGCTATCATTGCCTTTCTCTCTCTATCACATTCATACCCCAGGCAGAGCTACTGCC--CCTCCCACCTGTCCA---CCCTGCCTGTCTCCCAGCCCCCATCCTTCTCTCTGAGTCTTGGAACATCATGAAAGCCTCTTCTACAGATTTCCTTTTAATGTGCCCTGCCTAGCCTTGGACAGAGGGAGTACTGT----AAAGCAACATGCAGGGCTGCCAGTTTTGGAAATGAATGAGCTCAGTTGATTCCTGAATATTAAATCAGTTCTGTAAGCAGtagaatgagatcatatcttaCAAACCTGACCCAAAGTGTTCCT---GACTTTATTAATTGGGGTTTAACATCATCAAGGGCTGTAGCACTGGGCACCCGAGGAAATTAGCCTAAGGCCAAATGAAATCCCCAAACTCCACTCAGATTCCTGC-TGGCCAAGTGCACCTAGGGCCACgccttttaaaatatgtccttTGTTATCAAGGGAAATCTGAGACAGAAAACACATGTTGGCAGCATCACGTGAGCGCCTCTCTGCACATAAAGTGGTTGTATCACAAGGGGGAAAAGCTTTCGCTCTtgt--gctgttttgttttgg-tttcttgtTTACGTGGACTCTGTGAGACTCATGCATCTGGAAGAGGCTTGAAGCAGAGTG----GAAAACCTAGAGCAAAAATCATGCCGGGGAAAGGAAAATCATTCAAAAACAAAGACTAAAGGA-------------GGAATAATTTTCTTACCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82533233 1798 + 85787240 TATATATGTTGCTGTAGTTAGGTGGTCTGTT--------TTCT-TGCTAG-TTTTTCT---ACTTTAACTTTTTCAGT----TTCCTTTTGAGAAAAGTAAA---AAAATGT--ATAAAGCGTTTCAAAGAAGTTAGGAGGTTCCAGATTG-TACGAGCTTTCTTCTTGTTCAGTGGACTTGCAGAATACCT---AGTTCTATCAGAAGAGACACACAAACTACTGACATAGAAGCTATAAACATCCTCCGGTGGACGGGAATAAAATGGGCAATAAATGAAGAAGGTTTCTGAACTGACAGTCATTGCTCTAATCAGGCTTATTCAGAGTTGCTGAAATATTTGACATTGGCTCATGTTAGAATCAAAGACGGAACTGAAATGTATTCTCTTTACAGGATCATAAAGATGAAGTTAGCCTGTGGCTTTCAGAACAGGTTCTTTCTGGCTGCATAAATGTGAGGgtt-----ttttgtttgtttgtttgtttgtttgtttgttttgttttgtttTTTAA---------CTAAT-GTCAAATGTTGACTACGTTTCCCGTCCATTTCAACTTTTCTTGAGGTTGGACATCTCCCCATTCTAGAGTACAATGTCTGGTCACTCTTGGGTTGCAGGCCACTGTCTAGTGGAAAGCTAGTCATTGCTAGTTTATACCAGTCAGAGACTTTTCCATC-TTTCTGTGTG----AGGGCTCGGTTTAAGCACTTCAATTCCTAAGTATTC-AGGGAGGAAAAACAAGTCACTTGAAGACCAAAATCAGTTTA-TGTCACAAGAGAAAGGAACAGCTATTTAAAAGATGAGAAATTGAAATTTAAAAATATGACCTACCTTTTCTTCGAAAGCTGAAGTGAGGTGAATTTTGTATCGGAAGAGTGACATAAGCTTTCTTGATTAAAAAGCAGTATTTTAAAGGAGGCTTTTAAGATCATAAATCACTCTTTTGATAA----GTCATCAAAAGAGA----------------TGGCTGAT-ATGTTTTATGGTCATTTGCAACA-TTTTTTAAAAAGTCCATACTGTAATGTTAATGCAGC-ATTTCTGGCTTCTTAAAACTTACATAGATTTGGAAGTGGGATTTCTAACAATAACA--GTCATGAGTTTTTCTGAGCTATCATTGCCTTTCTCTCTGTATCACATTCATACCCCAGGCAGAGCTACTGCC--CCTCCCACCTGTCCA---CCCTGCCTGTCTCCCAGCCCCCATCCTTCTCTCTGAGTCTTGGAACATCATGAAAGCCTCTTCTACAGATTTCCTTTTAATGTGCCCTGCCCAGCCTTGGACAGAGGGAGTACTGT----AAAGCAACATGCAGGGCTGCCAGTTTTGGAAATGAATGAGCTCAGTTGATTCCTGAATATTAAATCAGTTCTGTAAGCAGTAGGATGAGATCATATCTTACAAACCTGACCTGAAGTGTTCTT---AACTTTATTAATTGGGGTTTAACATCATCAAGGGCTGTAGCACTGGGCACCCGAGGAAATTAGCCTAAGGCCAAATGAAATCCCCAAACTCCACTCAGATTCCTGC-TGGCCAAATGCACCTAGGGCCACGCCTTTTAAAATATGTCCTTTGTTATCAAGGGAAATCTGAGACAGAAAACACATGTTGGCAGCATCACGTGAGCGCCTCTCTGCACATAAAGTGGTTGTATCACAAGGGGGAAAAGCTTTCGATCTTGT--GCTGTTTTGTTTTGG-TTTCTTGTTTATGTGGACTCTGTGAGACTTATGCATCTGGAAGAGGCTTGAAGCAGAGTG----GAAAACCTAGAGCAAAAATCATGCTGGGGAAAGGAAAATCATTAAAAAACAAAGACTAAAAAA-------------GGAATAATTTTCTTACCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14214662 1738 - 49578535 TATGTATGTTACTGGAGTTAGGGGGTCTGTT--------TTCT-TGCTGTTTTTTTTTTTTACTTTAACTTTTTCAGT----TTCCTTTTGAGAAAAGTAAAAATAAAATGT--ATCAAGTATTCCAGAGAAGTCAGGAGGGTCCAGATTA-CACAAGCTTTCTTCTTGTTCAGTGGACTTGCAGAATACAT---AGTTATTTTGGAAGAGTCATAGAAACTACTGACATAGAAGCTACAGACATTCCCTGGAGGATGGGAGTGACATAGGAAAGAAGTGAAGAAGGTTTTTGAACTGACAGTCATTGCTATCATCAGGCTTATATGCAGTTGCTAAAATATTTGACATTGGCTCACTTTAGAATCAAAGACAGAAGTGAAATGTGTTCTCTCTGCAGGATCATAAAACTGAAGTTAGCCTATGGATTTCAGAAGAGGTTCTTTCTGGCTGCATAAATGTGAGGCTG-----AT---------T----------------------TCTTTTTTTTGGA---------CTAATCGTCAAATGTTGACTATGTTTCCCGTCCATTTCAACTCTTCTTGAGGTTGGACATCCCCCCATTCTAGGGTACAATGTCTGGTTACTA--GGATGGCAAGCCACTGTCTAGTGGAAGGCTAGTCATTGCAAGCTGATATTAGTCAGAGACTCTTCCATCTTTTTTGTGTG----AGGACTTGGTTTAAACACTTCAACTCCCAAGTATTC-AGGGAGGAAAAATAAGTCACTTGAAGAGCAAAATCAGTTCA-TTTCACAAGAGAAAGGAACAGCCATCTAAAATATGAGAAATTGAAATTTAAAAATGTGATCTGGCTTTTCTCCGAAATCTGAAATGAGGTTAGTTTTGTATAGGCAGAGTAACATAAACTTTCTTGATTAAAAAGCAGTATTTTAAAGGAGGCTTTTAAGATCATAAATCAC---TTAGGTAAC---GATAGCAAAAGAGA----------------TGGCTGAT-ATTTTAGATGGTCATTTGCAACT-TTTTAAAAAGAGTCTGTACAGTAATGTTGATGCAGCTATTTCTGGCTTCTTAAAACTCGCATGGATTTGGAAGTGGGATTTCTGACAATAGCA--GTCATGAGTTTTTCAGAGCTATCA--GCCTTTCTCTCTCCATCATGTTCATACCCCAGGCAGAGCTACTGCC--CCTCCCACCTGCCCG---CCCTG-CGGTCTCCCAGCCCCCATCCTTCTCTCTGCGCCTTGGAACATCATGAAAGATTCTCCTACAGATCTCCGTGTAACATG-CCTGCCCAGCC-CGGACAGAGGGAGTGCTGT----AAAGCAACACGCAGGGCCGCCACTGCTGGGAATGAATGA-CTCGGTTGATTCCTGAATAGTAAATCAGTTCTGTGAGCAGTAGAA---------------------TGACCCAGAGTGTTCCT---GAC--TATTAATTGGGGTTTAACCTCATCAAGAGCTATAGCACTGGGCACCC-AGGGAATCAGCCTAAAGCCAGGTGAAATCCCCAAACTCCACTCGGATTCCTGC-TGGCCAAATGCACCCAGGGCCACGCCTTTTAACATACGTCCTTTGTTATCAAGGGAAATCCGAGACAGAAA--ACATGTTGGCAGCATCACGTGAGTGCTGCTCCGCACATAAAGTGGTTGTATCACAGGGG--AAACACTTTCCATCTTGT--GCTGTTTTCTCTTGG-TTTCTTGTTTATATGGGCTCTCTTAGACTCATGCATCTGGAAGAGGCTTGACG-AGAGTG----GAAAACCTAGAGCAAAAAACATGCAGGGGAAAGGAAAATCATTACAAAACGAAGACTGGAAAA-------------GGAATACTTTTCTTACCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178798873 1698 + 195471971 TGTGTATATTCCTCTAGTTACATGCTCTGTC--------TTATGTGCTTTGCTTTTTA---ATTCTAACTTTCTCAGCGAA-TTTCCTTAGAGAAGAATGAAACCTAAATGTGCAAAAAGTATGGCTAAGAAGTTAGGTGGGTTCAGATTTCTGTGTGTTTTCCTATTATGTAATTGGCGTTCTGAATACATATCAGCCCTATCG---CAGACACACAAACTATTGGCACAGAATCTGCAAACGTGCTCCAGAGGATGAGAATAAAATAGGAAGGAAGCGAATCAGGATTTTGCACTGGTAGTCATCCCTGTAAGGAGACTTATTCAGAGTTGTGAAAATCTTTGACATCGACACCTCTTAGAATCAAAGATGGAATTGAAATGCGTTCTCTTCGCAGGGTCATGAAAATGAAGTTAGCCTATGGCTTTCAGAGCAGATTCTTTCTAGCTACATAGATGCAAGATTG-----AT-------------------------------------------AAAAAGAAAGCCTAAG-GTTCAATGCTGACTGAATCTCC-ATGGGCTTCAGCTTTGCCTGAGA-CGGACCCCTCCCTGTTCTAGCGGACGGGGTCT----------GGGCTG-AGGGTACTGGTGAGGTAAGAGTCAGCCGT---------------GTGAGAG-CTCGTCCATC-TTTCTGTATGTGCTAGAATTTGATTCAAGTACCTCAGTTACCAAG---------------AAACA-------TGAAAACCCAAATCAGTTTACTGTCGC-------AGAAACA-------AAAAGAT------CTAAAAGTTAAAGATAGGATTTGCATTTTTCTC-ACATATGAAGCAAGGTCAATTCTGTGTAGGAAGAGCCACTTAAGCTTTCTAGATTAACACATAGTCTTTTATTAGAGATCTTTACCATCATAAATCAC---TTGAGCATGGATGCTTTCAGTAGAGGATTTTTTTTTTTGGTTTTGCTTTT-TTGTTTTACAGACAGTTGTAACTGTCCCCTTTAAAGTCCCTTTGGTAGCAGTAA-----CTATTTCTGCCCACTTGAAGCT-GCGTGGATCTGGAAGAGGCTTTTCTAAGAA-----------------------GGCTGTTATGACTTCTCTGCCTTT-TTGGATACA-ACCCCAGGCAGAGCTACTCCCCTCCACCTGCCTGCCCT---CCCTGATTGTCTCCTA--CCCCACACTTTCCTCCGAATCTTGGACCATCATGAAATCCCCTTCTCTAGATGCTCTGGGAACATACCCAGCCCGGTCCTGGACAGA--GAGTACTGTAAAAAAAGCAACCCGCAGCTCTGTCAATCAAGG-CCTGAATGAGCTCAGTTGATTCCTGAATATTAAATCAGTTCTGTGAGCAGCAGAATGAGATCA---------GACCTGACCCAAAGTGGTGCT---AACTTTATTAATCGGCACATAACGTTATCATGAGT-----CTCCAAGCTCCTGAGGGGATCAGCCGAAAGCCAAACTGAATCCCTGGACTAGTCTGTGATTCTTGC-CAGCCAAACCTACCTAGGACCACGCCTTTTAAAATATGTCCTTTGTTATCAAGGGGAATCTGAGACAGAAAACACATGTTGGCAGCATCACGTGAGCGC--CTTGGTGCATGAAGTGGTTG-GTCGAAAGAGG-AAAGGCTTTGAGCTCTGGGAGCTGTTTTGTTTGGG-TTTCTGGTTTATATGAACTCTGGTAGACTCACGCATCTGGAAGAGGTTTGGTG-GGGGTGGGGAGAGAACCTGGAGCAAGG--CATGCAGGGAAAGGGAACATCATTAAACATTTAAAAGAAAAAGGCAGAGTCAGACTTGAGAGATTTTTCTTACCC i mm10.chr1 C 0 C 0 s canFam3.chr7 36364373 1761 + 80974532 --TGTCTGTTTCTGTAGTTAGATGGTCTGTTCTTCGTTGTTGT-TGTTGTTTTTTTTT--TACTTTAACTTTCTCAGTGAATTTCCTTTCGAGAAGAGTGAGAATAACATGT--CTCAAGTATTCCAAAGAACTTGGGAGGGTCCAGATTG-TAGGAGCTTTCTTCTTGTTCTATTGACTTGCAGAATACTTAC-AGCTCTATCAGATGAGGCACACAAACT---GATACGGAATCTACAAACATCCCCCTGAGGATGAGGCTGAAATGGGAAATAAATGAACCAGGTTTTTGAACTGACAATCATTGCTATAATCAGACTTATTCAGAGTTGCTAAAATATTTGACATTGGCTCACTGTGGAATCAAAGATGGAATTGAAATGTGTTCTCTTCGCAGGGTCATAAA-ATGAAGTTAGCCTGTGGCTTTCAGAACAGG----TTCTGGCTACATACGTATGAGATTG-----AT-----------------------------------CCCCCCCCCC---------CCCAT-GTTAAATGTCAACTCTATTTCCCTTCTATTTCAGCTTTTCTTGAGACAGAACACCTCCCCGTTTTAGCATATAATGTCTGGCCACCCGACAGTTGCAGGACACTGGCGATTTGCAAGCCAGTC----------TGTGCTAGTCAGAG--TTTTCCATC-TTTCTGACCT----GGGGCTTGATTTAAGCACTTAAACTGCCCAGCCTTAGAGGGGATAAAAACCAGTAACTTGAAGACCAGAATCAGTTTA-TTTCACAGGAGAAGGGAATGGCTATCCGAAAGATTAGAAATTGAAATGAAAGAATATGATTTGCCTTTTCTT----ATTGGAAATAAGGTTAATTTGGTGTGGCAAGAGCAACTTCAGCTTTCCTTATTTGACAACAGTATACTCCAGGAGACTTCTGAGGTCCTAAGTCAC---TTACATAAG---AACATCAAAGTAGA----------------TTGCTGGTCTTTTTTTATGGCCGGTTGCAACTTTCTCTCTTATAGTCCGTGCGATAGTATCAATACAGAGATCTCTGCCTTCCTAAAACTTGCTGAGATCTGGAAGCGAGGTTTCTAACAGCGACACCATAAGGAGCTTTTCTGAGTAACCTTTGGCTTTCTCTCTCCATCCCATCCAGACTCTGGGCAGGGCTGCCGCC--CCTCCCACCTGCCCATCCCCCTGCCTATCTCCCAGCCTCCGTCCTTCCCCCTGGGTCTTGGAACATCATAAAAGACCCTTCTAAAGAT-TCCTTTCAGCGCACCCTGCCCAGCTCTGGACAGAGGGAGCGCTGT----AATGTAACACACAGGGCTGCCAAATTTGGAATTGAATGAGTTCTGTTGATTCCTGAATATGAAATCCGTTCTGTGAGCAATTGAATGAGATCATATCTCACAAACCTGACCCAAAGTATTCCT---AACTTTATTGATTGGCATTTAACATCATCAAGGGTTATAGCGCTGAGCACCCGAGGGGACCAGCCTAAGACCAAACTAAACCCCCAAACTCTTCTCGGATTCCTGCTTGGGCAAATATACCTAGGGCCACGCCTTTTAAAATATGTCCTTTGTTATCAAGGGAAATCTGAGACAGAAAACACATGTTGGCAGGGTCACGTGAGTGCCTCTCCGCTCATGAAGTGGTTGTATCACAAGGGG-AAATGCTTTCAATCTAGC--ACCGTTTTGTTTTGGTTTTTTTGTTCATACGGGTTCCGTCAGACTCACGCATCTGGAAGGGGTTTGGAAGGGAGTG----AAAAAGCCAAGACAGAA--CATGCAGGGCAAAGGAAAATCACTAAAAAAGTCAGTTTTGAAAG-------------GGAACAATTCTCTTACCC i canFam3.chr7 C 0 C 0 a score=353351.000000 s hg38.chr1_KI270759v1_alt 207235 132 + 425601 AAATTCCAGTTCTCATCCTTGTTTTGGGTTCCCT----GTTAAAGCAGATACCAGTTATAGCCTTCCTGGGTTAGGGGAGACAGACAGTCTTTCATCATGCCCCTGGATTTTGAGCAAAGGAGAA--AGCTTGCTCCA s panTro4.chr1 224961442 132 + 228333871 AAATTCCAGTTCTCATCCTTGTTTTGGGTTCCCG----GTTAAAGCAGATACCAGTTATAGCCTTCCTGGGTTAGGGGAGACAGACAGTCTTTCATCATGCTCCTGGATTTTGAGCAAAGGAGAA--AGCTTGCTCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226318739 132 - 229942017 AAATTCCAGTTCTCATCCTTGTTTTGGGTTTCCT----GTTAAAGCAGATACCAGTTATAGCCTTTCTGGGTTAGGGGAGACAGACAGTCTTTCATCATGCCCCTGGATTTTGAGCAAAGGAGAA--AGCTTGCTCCA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16923232 131 - 229590362 AAATTCCAGTTCTCATCCTTGTTTGCGGCTCCCT----GTTAAAGCAGATACCAGTTATAGCCTTCCTGGGTTAGGGGAAACAGACAGTCTTTCATCGTGCCCCTGG-TTTTGAGCTAAGGAGAA--GGCTTGCTCCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223686444 131 - 227556264 AAATTCCAGTTCTCATCCTTGTTTGCGGCTCCCT----GTTAAAGCAGATACCAGTTATAGCCTTCCTGGGTTAGGGGAAACAGACAGTCTTTCATCGTGCCCCTGG-TTTTGAGCTAAGGAGAA--GGCTTGCTCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16736726 132 - 220367699 AAATTCCAGTTCTCATCCTTGTTTGCGGCTCCCT----GTTAAAGCAGATACCAGTTATAGCCTTCCTGGGTTAGGGGAAACAGACAGTCTTTCATCGTGCCCCTGGATTTTGAGCTAAGGAGAA--GGCTTGctcca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82535031 132 + 85787240 AAATTCCAGTTCTCATCCTTGTTTGCGGCTCCCT----GTTAAAGCAGACACCAGTTATAGCCTTCCTGGGTTAGGGGAGACAGACAGTCTTTCACCGTGCCCCTGGATTTTGAGCTAAGGAGAA--AGCTTGCTCCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14216400 128 - 49578535 AAATTCCAGTTCTCACCCTTGTCTTGGGTTCCCTTTTGGTTAAAGCAGATACCAATTACAGCCTTCCTGGGTTAGTGGAGACAGACAGTCTTTCATGGTGCCATTGAATTTTGAGCAAAGGAAAA--AAC-------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178800571 129 + 195471971 ACACTCGAGTCACTACGCTTTTTT--GGGTCCCC----ATAAAGGTAGGTATCAATTGCAACCTTCCT-GATGAGTGGGGAGGGAT--TATTTCTTAACACTTTTGGATTTGGGGGGGGGAAGAATTTGCTTTCTCCA i mm10.chr1 C 0 C 0 s canFam3.chr7 36366134 129 + 80974532 -AATTCCAGTTCCCATCCTTGGTTTCAATT-CCT----GTGAAAGCATCCACTCA-TGTTGTCCTCCTGCGTTCATGCAGACACAGATTCTTTCATTCTGCTTTTGGATTTCAAGCAAAGGAGGG--AGATTGCTTCA i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140208673 2629 - 143122389 M a score=694257.000000 s hg38.chr1_KI270759v1_alt 207367 259 + 425601 GAAATAGAAAAGAAAAGGCAAA-AAGAAACCATCTTTCGAGTTTCTGCTCACT---AACAGAGGAAGCAACCCca------------ccctcctccacaccctcctccacCCCCACAG-CTTGTGCCTCTCAA--------CTGCCCCTGGTGG---------ACAGCTCCAACCTGCACCCCC---CCCCAACCCCGCCGCCCCCTCTAGAATCTCAC-----------------------------------------GTGTTTTCGTGGAGGACCGAGAGTGCTTTTTAGCAGTGAATGAGCAAAGAGACCAGATATGCTGATACC-TGCACATG s panTro4.chr1 224961574 271 + 228333871 GAAATAGAAAAGAAAAGGCAAA-AAGAAACCACCTTTCGAGTTTCTGCTCAGT---AACAGAGGAAGCAAccccaccctcctccaccccctcctccacaccctcctccaccccctcAG-CCTGTGCCTCTCAA--------GTGCCCCTGGTGG---------ACAGCTCCAACCCGCACCCCC---CCCAACCCCCGCCGCCCCCTCTAGAATCTCAC-----------------------------------------GTGTTTTTGTGGAGGACGGAGAGTGCTTTTTAGCAGTGAATGAGCAAAGAGACCAGATATGCTGATACC-TGCACATG i panTro4.chr1 C 0 I 531 s ponAbe2.chr1 226318871 246 - 229942017 GAAATAGAAAAGAAAAAGCAAA-AAGAAACCATCTTTCGAGTTTCTGCTCACT---AACAGAGGAAGCAACCCCA------------CCCTCCTACACCCTCTCCTCCACCCCC-CAG-CCTGTGCCTCTC--------------------------------ACAGCTCCAACCCGCACCCCCACACCCCCACCCCGCCGCCCCCTCTAGAATCTCAC-----------------------------------------GTGTTTTCATGGAGGACGGAGAGTGCTTTTTAGCAGTGAATGAGCAAAGAGACCAGATATGCTGATACC-TGCACACG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140211306 258 - 143122389 GAAATAGAAAAGAAAAGGCAGT-AAGAAACCATCTTTCAAGTTTCTGCTCACT---AACAGAGGAAGCAACCCCA------------CCCTCCTACATCCCCTCCTCCACCCCCCCAG-CCTGTGCCTCTCAA--------GTGCCGCTGGTGG---------ACAGCTCCAACCCGCACCCC----CCCACCTCCCGCCGCCCCCTCTAGAACCTCAC-----------------------------------------GTGTTTTTGTGGAGGACGGAGAGTGCTTTTTAGCAGTGAATGAGCAAAGAGACCAGATATGCTGATACC-TGCACACG i nomLeu3.chr5 M 2629 C 0 s rheMac3.chr1 16923363 240 - 229590362 GAAATAGAAAAGAAAAGGCAAATAAGAAACCATTTTTCAAGTTTCCGCCCACT---GACAGAGGAAGCAACCCCA------------CCCTCCTACATCCCCTCCTCCACGCCCCCAG-CCTGTGCCTCTGGA--------GTACCGCTGGTGG---------ACAGCTCCAACCCGCA---------------------GCCCCCTCTAGAATCTCAC-----------------------------------------GTGTTTTCGTGGGGGACGGAGAGTGCTTTTTAGCAGTGAATGAGC--GGAGACCAGATATGCTGATACC-TGCACACC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223686575 240 - 227556264 GAAATAGAAAAGAAAAGGCAAATAAGAAACCATTTTTCAAGTTTCCGCTCACT---GACAGAGGAAGCAACCCCA------------CCCTCCTACATCCCCTCCTCCACGCCCCCAG-CCTGTGCCTCTGGA--------GTACCGCTGGTGG---------ACAGCTCCAACCCGCA---------------------GCCCCCTCTAGAATCTCAC-----------------------------------------GTGTTTTCGTGGGGGACGGAGAGTGCTTTTTAGCAGTGAATGAGC--GGAGACCAGATATGCTGATACC-TGCACACC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16736858 240 - 220367699 gaaatagaaaagaaaaggcaaataagaAACCATTTTTCAAGTTTCCGCTCACT---GACAGAGGAAGCAAGCCCA------------CCCTCCTACATCCCCTCCTCCACGCCCCCAG-CCTGTGCCTCTCGA--------GTACCGCTGGTGG---------ACAGCTCCAACCCGCA---------------------GCCCCCTCTAGAATCTCAC-----------------------------------------GTGTTTTCGTGGGGGACGGAGAGTGCTTTTGAGCAGTGAATGAGC--GGAGACCAGATATGCTGATACC-TGCACACC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82535163 240 + 85787240 GAAATAGAAAAGAAAAGGCAAATAAGAAACCATTTTTCAAGTTTCCGCTCACT---GGCAGAGGCAGCAACCCCA------------CCCTCCTACATCCCCTCCTCCACGCCCCCAG-CCTGTGCCTCTCCA--------GTACCGCTGGTGG---------ACAGCTCCAACCCGCA---------------------GCCCCCTCTAGAATCTCAT-----------------------------------------GTGTTTTCGTGGGGGACGGAGAGTGCTTTTTAGCAGTGAATGAGC--AGAGACCAGATATGCTGATACC-TGCACACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14216528 218 - 49578535 ----------AGAAAAGGCAAT-GAGAAACCATCTTTGGAA-TTCTGCTCACT---AAGGGCAGAAGCAACCCCA------------CCCTCCTCCACCTCCTCCTCCACCC---CAG-CCTGTGCCTCTCAA--------GTGTCCCCGGTGG---------ACAGCTCCA-----CA---------------------ACCCC--TGAGAATCTCAT-----------------------------------------GTGTTTTCATGGAGGATG--GAGTGTTTTTTAGCAGTGAATGAGCAAAGAGACCAGATATGCTGATACC-TGCAGACA i calJac3.chr19 C 0 C 0 s mm10.chr1 178800700 284 + 195471971 GAAGTAGAAAGGACA--GTAAG-GAGCAACAACCTTTCACATGCCTGCTCATCTTAAAAAGAGCATGCATCCCTG------------TCTACATTTCCTCCCTGGTCCATGTCTCTTG----GTACCTCAGAA--------GTGTTCCTTGTGGGGGAAAAAAAGAGAGAAAGGCCTCG---------------------AGTCCCCCTGGACCCTCTC---TGTCCTATTAAGGGAGAAGGATGAGCAGCCAAGGACA-GGGTTTTAGTGGAGGGTAGAGGGTAGCTTT-AATGGTGAATGAGGAAAAAGGCCAGGTATGCTGATATC-TGCAAGCA i mm10.chr1 C 0 C 0 s canFam3.chr7 36366263 285 + 80974532 GAACTATTTTTTAAA-GGCAAT-AAGAAACCATCTTTGAAGTTCCTGCTCACTTC-AACAGAGCAAGCAACTCCC---------ATCCCCTCCTGCTTTTCCTCCTTTACACCCCCCGACCCGCGCCTTGGAAGTATCCCTGTATCCCTGGTGA---------GCAGCTCTG----------------------------AATCCCCCAGGGATCTCATGTGTATCCTATTAGGGCAAGAAGACCAGCTGCCAAGGGCAGGATTTTGCTTGGAGGGTGGAGAATGCTTTTTACCAGTAAACGAGCAATGGGGCCAGATATGCTGATACCATACA---- i canFam3.chr7 C 0 C 0 a score=279630.000000 s hg38.chr1_KI270759v1_alt 207626 89 + 425601 GTCTTTGAGAGAGGCAGCTGATTGACATCGGGAAAACTGCTGAGCAATT-AAAAAAAAATACTAGAGTCAAGGTgaaagaaaggagagaa s ponAbe2.chr1 226319117 89 - 229942017 GTCTTTGAGAGAGGCAGCTGATTGGCATCGGGAAAACTGCTGAGCAATT-AAAAAAAAATACCAGAGTCAAGGTGAAAGAAAGgagagaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140211564 88 - 143122389 GTCTTTGAGAGAGGCAGCTGATTGGCATCAGGAAAACTGCTGAGCAATT--CAAAAAAATACTAAAGTCAAGGTGAAAGAAAGgagagag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16923603 88 - 229590362 GTCTTTGAGAGAGGCAGCTGATTGGCATCGGGAAAACTGCTGAGCAATT--AAAAAAAATACTAGAGTCAAGGTGAAAGAAAGgagagaa i rheMac3.chr1 C 0 I 81 s macFas5.chr1 223686815 88 - 227556264 GTCTTTGAGAGAGGCAGCTGATTGGCATCGGGAAAACTGCTGAGCAATT--AAAAAAAATACTAGAGTCAAGGTGAAAGAAAGgagagaa i macFas5.chr1 C 0 I 42 s papAnu2.chr1 16737098 88 - 220367699 GTCTTTGAGAGAGGCAGCTGATTGGCATCGGGAAAACTGCtgagctatt--aaaaaaaatactagagtCAAggtgaaagaaaggagagaa i papAnu2.chr1 C 0 I 16 s chlSab2.chr25 82535403 88 + 85787240 GTCTTTGAGAGAGGCAGCTGATTGGCATCGGGAAAACTGCTGAGCAATT--AAAAAAAATACTAGAGTCAAGGTgaaagaaaggagagaa i chlSab2.chr25 C 0 I 6 s calJac3.chr19 14216746 86 - 49578535 GTCT----GAGAGGCAGCTGATTGGTTTGAGAAAAAGTGCTGAGCAATTTTAAAAAACATACTGGAGCCAAGGTGAAAGAAAGGAgagag i calJac3.chr19 C 0 C 0 s mm10.chr1 178800984 78 + 195471971 GTCTTT--GAGAGGCCAGTGATTGGCATCAGGAAAACTGCTGAGCAATT--AAAAAAAA-AAAAGAATTAAGGTGAGGGAGAA------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36366548 87 + 80974532 GTCTTTGAGAGAGGCAGCTGATTGGCATCAGTAAAACTGCTGAGCAATTAAAAAAAAAATACTGCAGTCAAGGTGAG---AAGAAGAGAA i canFam3.chr7 C 0 C 0 e panTro4.chr1 224961845 531 + 228333871 I a score=74342.000000 s hg38.chr1_KI270759v1_alt 207715 56 + 425601 agagacagcgagaga-------gacag-----------GTGGGTTGTCTCTAA--AGTTTC-------AAGCAAAGTTCTGTG s ponAbe2.chr1 226319206 60 - 229942017 agagacagagagaga-------gagag-------agagGTGGGTTGTCTCTAA--AGTTTC-------AAGCAAAGTTCTGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140211652 58 - 143122389 agagagagagagaga-------gagGG---------AGGTGGGTTGTCTCTAA--AGTTTC-------AAGCAAAGTTCTGTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223686945 70 - 227556264 agagagagagagaaaggagaaagataggagagagagagGTGGGCTGTCTCTAA--AGTTTC-------AAGCAAAGTTC---- i macFas5.chr1 I 42 C 0 s papAnu2.chr1 16737202 67 - 220367699 agagacagagagaaaggagaaagatag----gagagagGTGGGTTGTCTCTAA--AGTTTC-------AAGCAAAGTTCT--- i papAnu2.chr1 I 16 C 0 s chlSab2.chr25 82535497 70 + 85787240 agagagagagagaaagagaaaggagag-agagagagagGTGGGTTGTCTCTAA--AGTTTC-------AAGCAAAGTTCT--- i chlSab2.chr25 I 6 C 0 s calJac3.chr19 14216832 64 - 49578535 agggagggggatagg-------gaggg---agggagAGGTGGGTTGTCTCTGA--AGTTTC-------AAGGGAAGTTCTGTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178801062 59 + 195471971 --------AGAGAAA-------GAGGA-------AGAGGCTAGGCGTTCCTGA--GGATCCTCAAGGATAGTATAGTTTTATG i mm10.chr1 C 0 C 0 s canFam3.chr7 36366635 42 + 80974532 ----------------------------------AGAGGTGAGGTGCCTCTGAGGAGTGTC-------AGGCAAAGTTCTGTT i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16923691 81 - 229590362 I e panTro4.chr1 224961845 531 + 228333871 I a score=38726.000000 s hg38.chr1_KI270759v1_alt 207771 37 + 425601 AAGCACCTAG-CAGGTCAAAA-CTGATAAGGGCAGATGG s panTro4.chr1 224962376 39 + 228333871 AAGCACCTAGGCAGGTCAAAAACTGATAAGGGCAGATGG i panTro4.chr1 I 531 C 0 s ponAbe2.chr1 226319266 37 - 229942017 AAGCACCTAG-CAGGTCTAAA-CTGATAAGGGCAGATGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140211710 37 - 143122389 AAGCACCTAG-CAGGTCTAAA-CTGATAAGGGCAGAGGG i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16737269 20 - 220367699 ------------------AAA-CTGATAAGGGCAGGTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82535567 20 + 85787240 ------------------AAA-CTGATAAGGGCAGATGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14216896 38 - 49578535 AAGCACCTGGCAAGATCTAAA-CTGATAACTCCGGTTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178801121 37 + 195471971 AAGAGCTGAG-AAGGTCTACA-CTGGTCATACTAGAAGG i mm10.chr1 C 0 C 0 s canFam3.chr7 36366677 36 + 80974532 ACGCGCCCAG-AAGGTCTGAA-TTGATAATGCCAATGG- i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16923691 81 - 229590362 I e macFas5.chr1 223687015 0 - 227556264 C a score=421725.000000 s hg38.chr1_KI270759v1_alt 207808 148 + 425601 TGAAG--AAAAGTCTTAAAC-TGATCAGTGCCTTACACATGGAACGAAGCTTTCATTTCGGCCCGATGTTCTGCCAGAAAGCTTTGCTTGAGATCCACCGCCAGTGTTCTTGCTTTGCTCAACGATCC-CACTATGCTGGTATGTTCTCTCT s panTro4.chr1 224962415 151 + 228333871 TGAAAGAAAAAGTCTTAAACCTGATCAGTGCCTTACACATGGAACGGAGCTTTCATTTCGGCCCGATGTTCTGCCAGAAAGCTTTGCTTGAGATCCACCGCCAGTGTTCTTGCTTTGCTCAACGATCC-CACTATGCTGGTGTGTTCTCTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226319303 148 - 229942017 TGAAG--AAAACTCTTAAAC-TGATCAGTGCCTTACACGTGGAACGAAGCTTTCATTTCGGCCCGATGTTCTGCCAGAAAGCTTTGCTTGAGATCCAGCGCCAGTGTTCTTGCTTTGCTCAACGATCC-CACTATGCTGGTATGTTCTCTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140211747 148 - 143122389 TGAAG--AAAAGTCTTAAAC-TGATCAGCGCCTTACACAGGGAACGAAGCTTTCATTTCGGCCCGATGTTCTGCCAGAAAGCTTTGCTTGAGATCCACCTCCAGTGTTCTTGCTTTGCTCAATGATCC-CACTATGCTGGCATGTTCTCTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16923772 146 - 229590362 TCAAG--CAAAGTTCTAAAC-TGATCAGTGCCTGACACACGGAACAAAGCTTTCGTTTCGGCCTGATGTTCTGCCAGAAAGCTTTGCTTGAGATCCACCGCCAGTGTTCTTGCTTTGCTCAACAATCC-TACTATGCTGGTATGT--TCTCT i rheMac3.chr1 I 81 C 0 s macFas5.chr1 223687015 133 - 227556264 ---------------TAAAC-TGATCAGTGCCTGACACACGGAACAAAGCTTTCATTTCGGCCTGATGTTCTGCCAGAAAGCTTTGCTTGAGATGCACCGCCAGTGTTCTTGCTTTGCTCAACAATCC-TACTATGCTGGTATGT--TTTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16737289 146 - 220367699 TGAAG--GTAAGTCTTAAAC-TGATCAGTGCCTTACACACGGAACAAAGCTTTCATTTCGGCCTGATGTTCTGCCAGAAAGCTTTGCTTGAGATCCACCGCCAGCGTTCTCGCTTTGCTCAACAGTCC-CACTATGCTGGTATGT--TCTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82535587 146 + 85787240 TGAAG--ATAAGTCTGAAAC-TGATCAGTGCCTTACACACGGAACAAAGCTTTCATTTCAGCCTGATGTTCTGCCAGAAAGCTTTGCTTGAGATCCACCGCCAGCGTTCTTGCTTTGCTCAACAATCC-CACTATGCTGGTATGT--TCTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14216934 140 - 49578535 TTAAG--GTAAGTCTTCAAC-TGATCAGGGCCTTACACTTGGAGCAAGGCTTTCACTGGGGCCTGATGTTC-GCCGCAAAGCT---CTTG---TCCACCGCCCGCTTTCTCACTTTGCTCGACCATCC--ACTGTGTTGGTGAGTTCTCTCT i calJac3.chr19 C 0 I 234 s mm10.chr1 178801158 129 + 195471971 -----TTAGAAATCTTACAC-TTACCAGAACCTCACAGGTGGGACAAAGCTCACATCGGGGTCCAAAGTTCTGCCAGGAAAGCTTGCTTAAGATGCACTGTTGGCTCTCTCCATTTGCTGTGTGA--------GTACTTTTGT--------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36366713 143 + 80974532 -----TTAATAGAGAGAAAC-TGATCAATACCTTGCAGATGGAATGGAGCTTTCATTTTGGCC-GATGTTTT-CTGCAAAGCT-TGCTCAGGAGCAACTGCCAGTTCTCTCAGTTGGCTCTGCAGTCTGGGCTGCGAAGGTGTGTTCTCCCT i canFam3.chr7 C 0 I 56 a score=1122372.000000 s hg38.chr1_KI270759v1_alt 207956 381 + 425601 CTGGACAGCC-----------GTCTTT-------------------------------------------CTA-ACAACGGGTGCTG-------------------------------------TTCTG-------------------------------------------------------------------------AAAAGCTGGGAGCCCAAGAAATGTTGTAAAAACCAAGCGTGGCCTTCAGCTGTTGGACCCTGAGGAACAGCACCTGCATTAGGGCCTTGCTCACGTTTCTTA--CTAGACAGGTTGCC--AGCTCTCATTTTTGCCCTTTGTCTGAGCTAATTGGCCTTAGTGTTACATCGGCCCACATTTTTCTCCCT-GTAAACTCCATTCCTCCCTCATTTCATCTACACTGCAGAGAACTCTCAAGCTCCTGGTGAGTTTTGCTGCAAAGCC--------TGT---GGC-ACGCTGAAAGAATGCACCCCTTCCGAACCTCATCTTCCCACTTCTTCCACTGGAGACACTGCGGGGGAGAaacat--------------------gt s panTro4.chr1 224962566 381 + 228333871 CTGGACAGCC-----------GTCTTT-------------------------------------------CTA-ACAACGGGTGCTG-------------------------------------TTCTG-------------------------------------------------------------------------AAAAGCTGGGAGCCCAAGAAATGCTGTAAAAACCAAGCGTGGCCTTCAGCTGTTGGACCCTGAGGAACAGCGCCTGCATTAGGGCCTTGCTCACGTTTCTTA--CTAGACAGGTTGCC--GGCTCTCGTTTTTGCCCTTTGTCTGAGCTAATTGGCCTTAGTGTTACATCGGCCCACATTTTTCTCCCT-GTAAACTCCATTCCTCCCTCATTTCATCTACACTGCAGAGAACTCTCAAGCTCCTGGTGAGTTTTGCTGCAAAGCC--------TGT---GGC-ACGCTGGAAGAATGCACCCCTTCCGAACCTCGTCTTCCCACTTCTTCCACTGGAGACACTGCGGGGGAGAaacat--------------------gt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226319451 381 - 229942017 CTGGACAGCC-----------GTCTTT-------------------------------------------CTA-ACAACGGGTGCTG-------------------------------------TTCTG-------------------------------------------------------------------------AAAAGCTGGGAGCCCAAGAAATGTTGTAAAAACCAAGCGTGGCCTTCAGCTGTTGAACTCTGAGGAACAGCGCCTGCATTAGGGCCTTGCTCACTTTTCTTA--CTAGACAGGTTGCC--GGTTCTCGTTTTTGCCCTTTGTCTGAGCTAATTGGCCTTAGTGTTACATCGGCCCACATTTTTCTCCCT-GAAAACTCCATTCCTCCCTCATTTCATCTACACTGCAGAGAACTCTCAAGCTCCTGGTGAGTTTTGCTGCAAAGCC--------TGT---GGC-ACGCTGAAAGAATGCACCCCTTCCGAACCTCATCTTCCCACTTCTTCCACTGGAGACACTGCGGGGGAGAaacat--------------------gt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140211895 377 - 143122389 CTGGACAGCC-----------GTCTTT-------------------------------------------CTA-ACAACGGGTGCTG-------------------------------------TTCTG-------------------------------------------------------------------------AAAAGCTGGGAGCCCAAGAAA---TGTAAAAACCAAGCGTGG-CTTCAGCTGTTGAAGTCTGAGGAACAGCGCCTCCATTAGGGCCTTGCTCACTTTTCTTA--CTACACATGTTGCC--CGTTCTCGTTTTTGCCCTTTGTCTGAGCTAATTGGCCTTAGTTTTACATCGGCCCACATTTTTCTCCCT-GTAAACTCCATTCCTTCCTCATTTCATCTACACTGCAGAGAACTCTCAAGCTCCTGGTGAGTTTTGCTGCAAAGCC--------TGT---GGC-ACGCTGAAAGAATGCACCCCTTCCGAACCTCATCTTCCCACTTCTTCCACTGGAGACGCTGCGGGGGAGAaacat--------------------gt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16923918 377 - 229590362 CTGGACAGCT-----------GTCTTT-------------------------------------------CTA-ACAACCGGTGCTT-------------------------------------TTCTG-------------------------------------------------------------------------AAAAGCTGGGAGCCCAAGAAGTGTTGTGAAAACCAAGCGTAGCCTTCAG-TGTTGAACTCTGAACAACAGCGCCTCCATCAGGGCCTGCCTCACTTGTCTTA--GCAGACACATTGCC--CGTTCTCACTTTTGCCCTT----TGAGCTAATTGGCCTTAGTTTTACATCGGCCCACATTTTTCTCCCT-GTAAACTCCATTCCTCCCTCATTTCATCTACACTGCAGAGAACTCTCAAGCTCCTGGTGAGTTTTGCTGCAAAGCC--------TGT---GGCAATGCTGAAAGAATGCACCCCGTCCGAACCTCGTCTTCCCACTTCTTCCACTGGAGACACTGCAGGGGAGAAGCAT--------------------gt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223687148 377 - 227556264 CTGGACAGCT-----------GTCTTT-------------------------------------------CTA-ACAACCGGTGCTT-------------------------------------TTCTG-------------------------------------------------------------------------AAAAGCTGGGAGCCCAAGAAGTGTTGTGAAAACCAAGCGTAGCCTTCAG-TGTTGAACTGTGAACAACAGCGCCTCCATCAGGGCCTGCCTCACTGGTCTTA--GCAGACACATTGCC--CGTTCTCACTTTTGCCCTT----TGAGCTAATTGGCCTTAGTTTTACATCGGCCCACATTTTTCTCCCT-GTAAACTCCATTCCTCCCTCATTTCATCTACACTGCAGAGAACTCTCAAGCTCCTGGTGAGTTTTGCTGCAAAGCC--------TGT---GGCAATGCTGAAAGAATGCACCCCGTCCGAACCTCGTCTTCCCACGTCTTCCACTGGAGACACTGCAGGGGAGAAGCAT--------------------gt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16737435 377 - 220367699 CTGGACAGCC-----------GTCTTT-------------------------------------------CTA-ACAACCGGTGCTG-------------------------------------TTCTG-------------------------------------------------------------------------AAAAGCTGGGAGCCCGAGAGGTGTTGTGAAAACCAAGCGTGGCCTTCAG-TGTTGAACTCTGAGCAACAGCGCCTCCATCAGGGCCTGCCTCACTTGTCTTA--GCAGACACGTTGCC--CGTTCTCACTTTTGCCCTT----TGAGCTAATTGGCCTTAGTTTTACATCGGCCCACATTTTTCTCCCT-GTAAACTCCATTCCTCCCTCATTTCATCTACACTGCAGAGAACTCTCAAGCTCCTGCTGAGTTTTGCTGCAAAGCC--------TGT---GTCAATGCTGAAAGAATGCACCCCGTCCGAACCTCGCCTTCCCACTTCTTCCACTGGAGACACTGCAGGGGAGAAGCAT--------------------GT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82535733 377 + 85787240 CTGGACAGCC-----------GTCTTT-------------------------------------------CTA-ACAACCGGTGCTG-------------------------------------TTCTG-------------------------------------------------------------------------AAAAGCTGGGAGCCCAAGAAGTGTTGTGAAAACCAAGCGTGGCCTTCAG-TGTTGAACTCTGAGCAACAGCGCCTCCATCAGGGCCCTCCTCACTTTTCTTA--GCAGACATGTTGCC--CGTTCTCACTTTTGCCCTT----TGAGCTAATTGGCCTTAGTTTTACATCGGCCCACATTTTTCTCCCT-GTAAACCCCATTCCTCCCTCATTTCATCTACACTGCAGAGAACTCTGAAGCTCCTGCTGAGTTTTGCTGCAAAGCC--------TGT---GGCAATGCTGAAAGAAGGCACCCCGTCCGAACCTCGTCTTCCCACTTCTTCCACTGGAGACACTGCAGGGGAGAAGCAT--------------------gt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14217308 374 - 49578535 cTGGACAGCC-----------ATCTTT-------------------------------------------CTA-ACAACTGGTACTG-------------------------------------TTCTG-------------------------------------------------------------------------AAAAGTTAGGAGCCCAAGAAAGGTTCTCAAAACCAAGCGTGGCCTTTAGCTGTGTGACTCTGAGGCTCAGCGTCTCCATTACAGGTGTTCCCAGTGTTCTTA--GTAGACAGCTTGCT--GGTTCTAGTTGCTGTGTT-----TGAACGAATGGGCCTTAGTGTTACATCTGCCCACCTTTTTCTCCCT-GTGAACTCCATCCCTCCCTCATTTCATTGACACTGCAGAGAATTCCCAAGTTCCTGGTGAGTCC--CTGCAGAGCC--------TGT---GCC-ACGCAGAAAGAATGCACCCCTTTGGAATTTCATCTTCCCATTTCTTCCACTGGAGAGACTATCGGGGAGAGATGT--------------------GG i calJac3.chr19 I 234 C 0 s mm10.chr1 178801287 380 + 195471971 CTGTCCTGGC-----------ATTCTC-------------------------------------------CTAGGTAACAGCTTCCA-------------------------------------TTCCG-------------------------------------------------------------------------TGAAGAAGGGTTCTCAGG----------------AAGCATGGCCTGAGA-GTCTCATCTCTGAAGATCAGGGTGGCCATGGAGACCTTGTT----TCTCTTATGGCACACATATGATCTGCGTTCTAATTCTTGTTCTG--TCTCAGCTGATCCTCCTTATTTTTGCAGCCCCTAGTACTTTTCTTCCTCATAAGATCTGTTTCTCTTCCATACCACCAGCCCTGCAGAAAAC-CCCAAGTCCCTGGTAGGTCTGGCTGCAGAGCC--------CATCCAGGC-------AGAGAGTACATCTATTTTTAACCTCACTTTCTTACCTAGTCCCTCAGAGAGACTTCAGGTAGGAAACACATCTTTGATAGATTTGGAGAAt i mm10.chr1 C 0 C 0 s canFam3.chr7 36366912 521 + 80974532 ctgggtggctcagttagctaagcctttggtttggggctctggtcctgatctcagggtcatgagatcgagcctc-acgccaggctcagcactcagtgtggagtcttcttgaaattttacttctccttctgcccctcctgcgcatgctgtctctcctcccccctctccaaataaataagtcttaaaaaaaaaAAATAAATAAATAAAAGTTGGGAGCTTATAAAAGGTTCCAAAAGC-AAGTGTTGTCTTCAGATCTTCATCTCCGAGGAGAAGTGCTTCTATTAGGGTCA---TCACTTTTCTTA------------------GGTTCTTCTGTTTGCCCTTTGTCTGTACTGACAGTCCGCAGTCTTATACCT-TCAAGATCCCTCTCACC-ATGAG----GTTCCTCCC-AATTTCATCTGTACCACAAGGAACTGTCAGGTTCCTCATGAATTTGGCTGCAGAGCCCAGACGTGTGT---TGC---------ACAGCACGCCTATCCTCAACCTCATCTTCCCACCTGTTCCCTTGGAAAGGCTGCAGGGAAGGCACCT--------------------GT i canFam3.chr7 I 56 I 4 a score=190369.000000 s hg38.chr1_KI270759v1_alt 208337 61 + 425601 aaatatcgttaataacaatgcatcgcgtccttgaaaattgctgctaag-----agagtaga--ttgta s panTro4.chr1 224962947 61 + 228333871 aaatatcgttaataacaatgcatcgcgtccttgaaaattgctgctaag-----agagtaga--tttta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226319832 61 - 229942017 aaatatcgttaataacaatgcatcacgtccttgaaaattgctgctgag-----agagtgga--tttta i ponAbe2.chr1 C 0 I 13 s nomLeu3.chr5 140212272 61 - 143122389 aaatatcgttagtaacaatgcatcgcgtccttgaaaattgctgctaag-----agagtaga--tttta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16924295 61 - 229590362 aaatatagttaataacaatgcatcgcatccttgaagattgctgctaag-----agaggaga--tttta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223687525 61 - 227556264 aaatatagttaataacaatgcatcgcatccttgaaaattgctgctaag-----agaggaga--tttta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16737812 63 - 220367699 AAATATAGCTAATAACAATGCATCGCATCCTTGAAAATTGCTGCTAAG-----AGAGGAgatttttta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82536110 61 + 85787240 aaatatagttaataacaatgcgtcgcatccttgaaaattgctgctaag-----agaggaga--tttta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14217682 61 - 49578535 AAAtatagttaataacaatgcattgcatcctctaaaactgctgctaac-----agagtagg--tttta i calJac3.chr19 C 0 C 0 s mm10.chr1 178801667 66 + 195471971 aattacatttaatagcaacatactgtattccttaaaattccttaaaagtgctaagagtgga--tttga i mm10.chr1 C 0 C 0 e canFam3.chr7 36367433 4 + 80974532 I a score=18664.000000 s hg38.chr1_KI270759v1_alt 208398 6 + 425601 agtgtt s panTro4.chr1 224963008 6 + 228333871 agtgtt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140212333 6 - 143122389 agtgtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16924356 6 - 229590362 agtgtt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223687586 6 - 227556264 agtgtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16737875 6 - 220367699 agtgtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82536171 6 + 85787240 agtgtt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14217743 6 - 49578535 agtgtt i calJac3.chr19 C 0 C 0 s mm10.chr1 178801733 6 + 195471971 agtgtg i mm10.chr1 C 0 C 0 e canFam3.chr7 36367433 4 + 80974532 I e ponAbe2.chr1 226319893 13 - 229942017 I a score=362751.000000 s hg38.chr1_KI270759v1_alt 208404 109 + 425601 ctcaccataaaaaagtatgtaagataatacatatgttaattagctcagtctagctattccacaatgtgtacatattttaaaacaatgtgttgtacatgataaatatata s panTro4.chr1 224963014 109 + 228333871 ctcaccataaaaaagtatgtaagataatacatatgttaattagctcagtctagctattccacaatgtgtacacattttaaaacaatgtgttgtacatgataaatatata i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226319906 109 - 229942017 cacaccataaaaaagtgtgtgagataatacatatgttaattagctcggtctagctattccacaatgtgtacatattttaaaacaatgtgttgtacatgataaatatata i ponAbe2.chr1 I 13 C 0 s nomLeu3.chr5 140212339 109 - 143122389 ctcaccataaaaaagtatgtgaaataatacacatgttaattagctcagtctagctattcctcaatgtgtacatactttaaaacaatgtgctgtacatgataaatatata i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16924362 109 - 229590362 ctcaccataaaaaagtatgtgagataatacatatgttaattagctcagtctagctattccacaatgtgtacgtattttaaaacaatgtgttgtacatgataaatagata i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223687592 109 - 227556264 ctcaccataaaaaagtatgtgagataatacatatgttaattagctcagtctagctattccacaatgtgtacgtattttaaaacaatgtgttgtacatgataaatagata i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16737881 109 - 220367699 cttaccataaaaaagtatgtgagataatacatatgttaattagctcagtCTAGCTATTCCACAATGTGTacgtattttaaaacaatgtgttgtacatgataaatagaTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82536177 109 + 85787240 ctcaccataaaaaagtatgtgagataatacatatgttaattagctcagtctagctattccacaatgtgtacgtattttaaaacaatgtgttgtacatgataaatagata i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14217749 109 - 49578535 ctcaccataaaaatgtgcgtgagagagtacatatgttaatgagctcagtctagctagtccacaatgtgtacgtattttaaaacaatgtgttgtacatgataaatatata i calJac3.chr19 C 0 C 0 s mm10.chr1 178801739 95 + 195471971 ---atccccaatagatatgtgagatgatgcac--gtcgatcagctcagttgcaatattcctcactgggagcacatctt---------tgttgtacacaacaaatttata i mm10.chr1 C 0 I 23 e canFam3.chr7 36367433 4 + 80974532 I a score=1009757.000000 s hg38.chr1_KI270759v1_alt 208513 354 + 425601 caacttccacttgtcagttaaaaaat-aaaAAATAAGTccaggcgcagtggctcacacctgtaatcccagcactttgggagtccgaggcgggcggatcacttgaggtcaggagttcaagactggcctagccaacatggcaaaaccccgtctctactaaaaatacaaaaatgttagccaggcatggtggcgggcgtctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaacccagaaggaagaagttgcagtgagccaagatc-ctccactgcattccagcctgggcgacagagtaagtgagactccatctcaaaaataataataataataataaaataaaaAA s panTro4.chr1 224963123 353 + 228333871 caacttccacttgtcagttaaaaaat-aaaAAATAAGTccaggcgcagtggctcacgcctgtaatcccagcactttgggagtccgaggcgggcggatcacttgaggtcaggagttcaagactggcctagccaacgtggcaaaaccccgtctctactaaaaatacaaaaatgttagccaggcatggtggcgggcgtctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccagaaggaagaagttgcagtgagccaagatc-ctgcactgcattccagcctgggcgacagagtaagtgagactccatctcaaaaataataataataataa-aaaatgaaaaA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226320015 352 - 229942017 caacttccacttgtcagttaaaaaat-aaaAAATAAggccaggcgcagtggctcacacctgtaatcccagcactttgggagtccgaggcaggcggatcacttgaggtcaggagttcaagactggcctggccaacacggcaaaaccccgtctctactaaaaacacaaaaaagttagccaggcatagtggcgggtgtctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggaagaagttgcagtgagccaagatc-ctccactgcactccagcctgggcgacagagtaagtgagactccatctcaaaa--aataataataataataaaataaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140212448 345 - 143122389 caacttctacttctcagttaaaaaat-aaaAAATAAggccaggcgcagtggcgcacacctgtaatcccagcactttgggagtccaagtcaggcggatcactggaggtcaggagttcaagactggcctggccaacatggcaaaaccccgtctctactaaaaataccaaaaagttagccaggcatggtggcgggtgtctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggaagaagttgcagtgagccgagatc-ctccactgcactacagcctgggcgacag----agtgagactccatctcaaaa-----aaaaaaaaaaataaaataaaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16924471 347 - 229590362 caacttctacttgtcagttaaaaaat-aaaAAATAAggccaggcgcagcagctcacacctgtaatcccagcactttgggagtctgaggcgggcggatcccttgaggtcaggagttcaagactggcctggccaacatggcaaaaccccgtctctactaaaaatacaaaaaagttagccaggcgtggtggcgggcgcctgtagtcccagctgctcgggagcctgaggcaggagaatcgcttgaacccaggaggaagaagttgcagtgagccaagatc-ctccaccgtactccagcctgggtgacgg----agtgagactccatctcaaaa--aataataataa-aataacataaaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223687701 347 - 227556264 caacttctacttgtcagttaaaaaat-aaaAAATAAggccaggcgcagcggctcacacctgtaatcccagcactttgggagtctgaggcgggcggatcccttgaggtcaggagttcaagactggcctggccaacatggcaaaaccccatctctactaaaaatacaaaaaagttagccaggcgtggtggcgggcgcctgtagtcccagctgctcgggagcctgaggcaggagaatcgcttgaacccaggaggaagaagttgcagtgagccaagatc-ctccaccgcactccagcctgggtgacgg----agtgagactccatctcaaaa--aataataataa-aataacataaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16737990 351 - 220367699 CAACTTCTACttgtcagttaaaaaat-aaaaaataaggccaggcgcagcggctcacacctgtaatcccagcattttgggagtctgaggtgggcggatcccttgaggtcaggagttcaagaccggcctggcctacgtggcaaaaccccgtctctactaaaaatacaaaaaagttagccaggtgtggtggcgggcgcctgtagtcccagctgctcgggagcctgaggcaggagaatcgcttgaacccaggaggaagaagttgcagtgagccaagatc-ctccactgcactccagcctgggtgacggagtaagtgagactccatctcaaaa--aataataataa-aataacataaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82536286 351 + 85787240 caacttctacttgtcagttaaaaaat-aaaAAATAAggccaggcgcagtggctcacacctgtaatcccagcactttgggagtgtgaggtgggcggatcccttgaggtcaggagttcaagaccggcctggcctacatggcaaaaccccgtctctactgaaaatacaaaaaagttaggcaggtgtggtggcgggcgcctgtagtcctagctgctcgggaggctaaggcaggagaatcgcttgaacccaggaggaagaagttgcagtgagccaagatc-ctccactggactccagcctgggtgacggagtaagtgagactccatctcaaaa--aataataataa-aataacatgaaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14217858 352 - 49578535 caacttttacttgtcggttaaaaactaaaaaAATAAggtcagttgtggtggctcacacctgtaatcacagcactctgggagtctgaggcgggcggatcgcttgaggtcaggaatttgaggccagcctggccagcatagcaaaa-cccatctctactaaaaatacgaaataattagccaggcatggtggcacgtgcctgtagtcccagctacttgggaggctgaggcagaagaatcacttgaacccacgagaaagaagttgcagtgaggtgagatcacgccactgcactccagcctgggcaacagagtgagtgagactccatctcaaaa--aataagaataa-aataaaaaaTATAA i calJac3.chr19 C 0 C 0 e mm10.chr1 178801834 23 + 195471971 I e canFam3.chr7 36367433 4 + 80974532 I a score=111032.000000 s hg38.chr1_KI270759v1_alt 208867 41 + 425601 TAGACATTTATATAATGAAGG-TTTTTAAAAAAGAAAATTAA s panTro4.chr1 224963476 41 + 228333871 TAGACATTTATATAATGAAGG-tttttaaaaaagaaaattaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226320367 41 - 229942017 TAGACATTTATATAATGAAGG-tttttaaaaaagaaaattaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140212793 42 - 143122389 CAGACATTTATATAATGAAGATTTTTTAAAAAAGAAAATTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16924818 41 - 229590362 TAGACTTTTATATAATGAAGG-GTTTTAAAAAAGAAAATTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223688048 41 - 227556264 TAGACTTTTATATAATGAAGG-GTTTTTAAAAAGAAAATTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16738341 41 - 220367699 tagacttttatataatgaagg-gttttaaaaaagaaaattaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82536637 41 + 85787240 TAGACTTTTATATAATGAAGG-GTTTTAAAAAAGAAAATTAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14218210 38 - 49578535 TAGGAATTTCTATAATTAAGG-TTTTTAGAAAAAGAA---AA i calJac3.chr19 C 0 C 0 s mm10.chr1 178801857 39 + 195471971 TAAAATTTCATATTGTTAGAC-TTGTAAGAAGAGAAAATT-- i mm10.chr1 I 23 C 0 e canFam3.chr7 36367433 4 + 80974532 I a score=258536.000000 s hg38.chr1_KI270759v1_alt 208908 81 + 425601 AATAAATTTGGAGAA------TGACCTGTG-AAAAATGCCTCTGCAAGTTTTCCTGA-CCAGAGGAAGGACTTGG--CTTCTCTCCTAGAC s panTro4.chr1 224963517 81 + 228333871 aataaattCGGAGAA------TGACCTGTG-AAAAATGCCTCTGCAAGTTTTCCTGA-CCAGAGGAAGGACTTGG--CTTCTCTCCTAGAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226320408 81 - 229942017 aataaatttGGAGAA------TGACCTGTG-AAAAATGCCTCTGCAAGTTTTCCTGA-CCAGAGCAAGGACTTGG--CTTCTCTCCTAGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140212835 82 - 143122389 AATAAATTTGGAGAG------TGACCTGTGAAAAAATGCCTCTGCAAGTTTTCCTGA-CCCGAGGAAGGACTTGG--CTTCTCTCCTAGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16924859 81 - 229590362 AACAACTTTGGAGAA------TGAGCTGTG-AAAAATGCCTCTGCAAGTTTTCCTGA-TCAAAGGAAGGACTTGC--CTTCTCTCCTAGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223688089 81 - 227556264 AACAACTTTGGAGAA------TGAGCTGTG-AAAAATGCCTCTGCAAGTTTTCCTGA-TCAAAGGAAGGACTTGC--CTTCTCTCCTAGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16738382 81 - 220367699 aacaactttgGAGAA------TGAGCTGTG-AAAAATGCCTCTGCAAGTTTTCCTGA-TCAAAGGAAGGACTTGC--CTTCCCTCCTAGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82536678 82 + 85787240 AGCAACTTTGGAGAA------TGAGCTGTG-AAAAATGCCTCTGCAAGTTTTCCTGACCCCGAGGAAGGACTTGC--CTTCCCTCCTAGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14218248 78 - 49578535 AATAAATTTGGACAA------TGACCTGTG-AAGAACGCCTCGGCAAGTTCTCCCGA-CCAGGGGAAGGGCTTG-----TCTCCTCTAGAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178801896 68 + 195471971 ---------------------TGACTCATG-GGAAATGGACGGAGAAGTTTTCCTGA-TCAGAGGAAAATGTTACTTTTTCCCTCCTAGAC i mm10.chr1 C 0 I 507 s canFam3.chr7 36367437 81 + 80974532 AATAAATTTGGAAAAGAAATCTGACCCATT-AAAAACGCCTCTGGAAGTTTTCTTGA-TCTGAGGAA-ATCTTGC--CTCCGCCAC----- i canFam3.chr7 I 4 C 0 a score=1344263.000000 s hg38.chr1_KI270759v1_alt 208989 444 + 425601 A-TTTTTTCTCGT-ATCTTCCTCTAGGAGTCAGTGGAAGAGTGGCGATTAGGTAACAT----CTGAATGTAGTAGAACCCAGAGCTGTTACCTCCATTTGAGCTACTG-CTGGT-CATTGCTTGA----------CTTCTATtctctccatcagtaaaatgcacgcgaagcttacctcattaggtttttcgagaattaaatgagataatgcatggtgcttagcttagcgtctggccatagCCTTGATGTCAATA---------CTGTCCTCATGTTCTCCTGTCAGCGGTAGGTCTGTCTCTCAGACACTTTCCAACAGAGGACCCAGATCCTTAATGACAGGGGACCTGGGAAGACAGGgaggcaatgtcacagaatggaaagcgtgctcgagtagaagtcaagacctgggtgt---ttgagtcccagctctgtgcataaccatttgagtgatcttaagaaaatgatcacccc s panTro4.chr1 224963598 444 + 228333871 G-TTTTTTCTCGT-ATCTTCCTCTAGGAGTCAGTGGAAGAGTGGCGATTAGGTAACAT----CTGAATGTAGTAGAACCCAGAGCTGTTACCTCCATTTGAGCTACTG-CTGAT-CATTGCTTGA----------CTTCTATtctctccatcagtaaaatgcacgcgaagcttacctcattaggtttttcgagaattaaatgagataatgcatggtgcttagcttagtgtctggccatagCCTTGATGTCAATA---------CTGTCCTCATGTTCTCCTGTCAGTGGTAGATCTGTCTCTCAGACACTTTCCAACAGAGGACCCAGATCCTTAATGACAGGGGACGTGGAAAGACAGGgaggcaatgtcacagaatggaaagcatgctcgagtagaagtcaagacctgggtgt---ttgagtcccagctctgtgcataaccatttgagtgatcttaagaaaatgatcacccc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226320489 445 - 229942017 A-TTTTTTCTCGT-ATCTTCCTCTAGGAGTCAGTGGAAGAGCGGCGATTAGGTAACAT----CTGAATGTAGTAGAACCCAGAGCTGTTACCTCCATTTGAACTACTG-CTggtacattgcttga----------cttctattctctccatcagtaaaatgcatgcgaagcttacctcattaggtttttcgagaattaaatgagataatgcatggtgcttagcttagcgtctggtcatagCCTTGATGTCAATA---------CTGTCCTCATGTTCTCCTGTAAGCGGTAGGTCTGTCTCTCAGACACCTTCCAACAGAGGACCCAGATCCTTAATGACAGGGGACCTGGGAAGACAGGgaggcaatgtcacagcatggaaagcatgctggagtagcagtcaagacctgggtgt---ttgagtcccagctctgtgcataaccatttgagtgatcttaagaaaatgatcacccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140212917 445 - 143122389 A-TTTTTTCGCCT-GTCTTCCTCTAGGAGTCAGTGGAAGAGCGGCGATTAGGTAACAT----CTGAATGTAGTAGAACCCAGAGCTGTTACCTCCATTTGAGCTACTG-CTGGTACATTGCTTGA----------CTTCTATTCTCTCCAACAGTAAAATGCATGCGAAGcttacctcattaggtttttcgagaattaaacgagataatgcatggtgcttagcttagcgtctggtcatagCCTTGATGTCAATG---------CTGTCCTCATGTTCTCCTGTCCGCGGTAGGTCTGTCTCTCAGACACTTTCCAACAGAGGACCCAGATCCTTAATGACAGGGGACCTGGGAAGACAGGgaggcaatgtgacagaatggaaagcatgctagagtagaagtcaggacctgggtgt---tcaagtcccagctctgtgcataaccatttgagtgatcttaagaaaatgatcacccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16924940 446 - 229590362 ATTTTTTTCTCCT-ATCTTCCTCTGGGAGGCAGTGGAAGAG-GGCAATTAGGGAACAT----CTAAATGTAGTAGGACCCAGCGCTGTTATCTCCATTTGAGCTACTGACTGCTACATTGCTTGg----------cttctgttctctcctccagtaaaacgcatgcgaagcttatctcattaggtttttcaagaattaaatgagataatgcatggtgcttagcttagtgtctggtcatagCCTCGATGTCAGGA---------CTGTCCTCATGTTCTCCTGTCAGCGGTAGGTCTGTCTCTCAGACACTTTCCAGCAGAGGACCCAGATCCTTAATGACGGGGGACCTGGGAAGACAGcgaggcagtgtgacagaatggaaagcgtgctagagtagaagtcaagacctgggtgt---ttgagtcccagctctgtgcgtaaccacttgagtgatgttgagaaaatgatcaccct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223688170 446 - 227556264 ATTTTTTTCTCCT-ATCTTCCTCTGGGAGGCAGTGGAAGAG-GGCAATTAGGGAACAT----CTAAATGTAGTAGGACCCAGCGCTGTTATCTCCATTTGAGCTACTGACTGCTACATTGCTTGg----------cttctgttctctcctccagtaaaacgcatgcgaagcttatctcattaggtttttcaagaattaaatgagataatgcatggtgcttagcttagtgtctggtcatagCCTCGATGTCAGGA---------CTGTCCTCATGTTCTCCTGTCAGCGGTAGGTCTGTCTCTCAGACACTTTCCAGCAGAGGACCCAGATCCTTAATGACGGGGGACCTGGGAAGACAGcgaggcagtgtgacagaatggaaagcgtgctagagtagaagtcaagacctgggtgt---ttgagtcccagctctgtgcgtaaccacttgagtgatgttgagaaaatgatcaccct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16738463 445 - 220367699 A-TTTTTTCTCCT-ATCTTCCTCTGGGAGGCAGTGGAAGAG-GGCGATTAGGGAACAT----CTAAATGTAGTAGGACCCAGCGCTGTTATCTCCATTTGAGCTACTGACTGCTACATTGCTTGG----------CTTCTGTTCTCTCCTTCAGTAAAGTGCATGCGAAGCTTATCTCATTAGGTTTttcaagaattaaatgagataatgcatggtGCTTAGCTTAGTGTCTGGTCATAGCCTTGATGTCAGGA---------CTGTCCTCATGTTCTCCTGTCAGCGGTAGGTCTGTCTCTCAGATACTTTCCAGCAGAGGACCCAGATCCTTAATGACGGGGGACCTGGGAAGACAGCGAGGCAGTGTGACAGAATGGAAAGCATGCTAGAGTAGAAGTCAAGACCTGGGtgt---ttgagtcccagctctgtGCGTAACCACTTGAGTGATGTTGAGAAAATGATCACCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82536760 445 + 85787240 A-TTTTTTCTCCT-ATCTTCCTCTGGGAGGCAGTGGAAGAG-GGCGATTAGGGAACAT----CTAAATGTAGTAGGACCCAGCGCTGTTATCTCCATTTGAGCTACTGACTGCTACATTGCTTGG----------CTTCTGTTCTCTCCTTCAGTAAAGTGCATGCGAAGcttatctcattaggtttttcaagaattaaatgagataatgcatgatgcttagcttagtgtctggtcatagCCTCGATGTCAGGA---------CTGTCCTCATGTTCTCCTGTCAGCGGTAGGTCTGTCTCTCAGACACTTTCCAGCAGAGGACCCAGATCCTTAATGACGGGGGACCTGGGAAGACAGcgaggcagtgtgacagaatggaaagtgtgcgagagtagaagtcaagacctgggtgt---ttgagtcccagctctgtgcgtaaccacttgagtgatgttgagaaaatgatcaccct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14218326 426 - 49578535 T-TTTGTTC---T-GTCTTCCTCCAGGAGTCGGTGGAGAAGCTGCAATTCGGTAACATCTAACTAAATGTAGCAGAACCTATAGCTGTGATTTCCATTTGAACTACTGACTGGTACATTGCTTAG-------------CTATTCTTTCCGTCAGTAAA-TGCCTGCAAAGCTTACCTCATTCGGATTTTTGAGAATT-----AGATAATGCATGGT-CTTAGCTTAATGTCTGGTCATAGCCTTGG-ATCAATA---------CTGTCCTCCTGTACCTCTGTCAGCGGTAGGCCTG-----CTGACACTTTCCAACAGAGGACCCAGATCCTTCATGACAGGGGACTTGGGAAGGCAG-GAGACCATgtgacagaatggaaag-attctaaagtggaagtcaagacctggctgt---ttcagtcccagctctgttcgtaaccacttgagtga---taagaaaataatcacccc i calJac3.chr19 C 0 I 315 s canFam3.chr7 36367518 430 + 80974532 A-AACTTTCTCATCATCTTTCTCCAGGAGCGGGTGGAAGAACTGCTATCAGACCCCCC----CTACGTTCCGCAGAGCCAATAGTTAGAGTGCACACTTGAGCTACTGGTGGGTACATTTCTCAGCTTCTCTAAGCTTCTGTTCTTGGCATCAGCAAAATGCACA-AAATCTTACCGCGTGAGATTTTGCGAAAATC----GAAATGTGACATG-TGCTCAGCATGATGCCCTGCCATGTCCTTGTTGGTGATGTTGGTGACCCTGTCCTCATGATCCTCTGT------------------------GCTTTCCA-CAGAGGGCCCCGATCCTACATGTTGGGGATTCTGGGGA-------Agacagtgtgatag-acagaaggggtgctggagtaggagttgagacctgggtgtttcttcagtcccagccctgttagtaaccacttgtatgaccttgaaagcatgatcacttc i canFam3.chr7 C 0 C 0 e mm10.chr1 178801964 507 + 195471971 I a score=-31.000000 s hg38.chr1_KI270759v1_alt 209433 1 + 425601 c s canFam3.chr7 36367948 1 + 80974532 T i canFam3.chr7 C 0 C 0 e mm10.chr1 178801964 507 + 195471971 I e calJac3.chr19 14218752 315 - 49578535 I e rheMac3.chr1 16925386 0 - 229590362 C e chlSab2.chr25 82537205 0 + 85787240 C e papAnu2.chr1 16738908 0 - 220367699 C e macFas5.chr1 223688616 0 - 227556264 C e nomLeu3.chr5 140213362 0 - 143122389 C e ponAbe2.chr1 226320934 0 - 229942017 C e panTro4.chr1 224964042 0 + 228333871 C a score=2500526.000000 s hg38.chr1_KI270759v1_alt 209434 806 + 425601 tctTCCATGCTACAGCCCTAGATGG-GTT--ACT--CCTTACTCCACCACTCTCCTCACCTTGACTCGTGCCGGTCCCTCAGCACGACGGGTCCTCC-----------TCCT-GGCTGGCTC----CTTTCTTCTCTCCTTCTATGAGA-CTCCCCTGATCCCCTGAGCCC--GAGGGTCAGGGCTTCTCCTCTGCCATCCTATGGCACCTACATCTCTCCAC-----GCTT----ACCGTGCAGCCATCA-----CTGTCTGCCTTTCCCACTCGACTGTCATC----------------TCTGTCTTAAAGCTCTGCCTTCGGT----------GTCAAGA-CCGGGCAGCACTCAATGAATGTTTCCCGAACGGATACGTAAATGACAGAAGGAATggatgaagagtccctgccctgcctc------aggtcttgagtgaagatgaaatgaaataatgtgtgtggaaggcttggatgagtagagtgctgtgcaGTTGCCTTCAGTTTTAAGTTAGTATGAGG-ACAAAGCA-TTTTTTATACCAATATTTTAGTT-GGTTTCTCAGATACTGAGATTCACACATTTTAGTGAAACAAAACAATATTCTCTT-TTATACCATCCTTGCAGTGTGGGCCCATTATTTGTTGTAGAAGCAGGCCAGGCTTTATGTGGGCTAGAACCTCTGATGGTTGAAA--CTGTGAGCAACAAAACTTTTCATTGCAGAATG--ACAGGTAAGATTCTGAAAGCCAGTGGCA-TGGGAGGGCTCGCTCTGTAACTCGGCTTGTCCCAGGGTATGAATGAGGGAGTTCAGATCCCTGCCTGTGAGGGTGGAGAAGGGAAAATGGTTTCTAAAAGCAGAGGAGGAAAGAGAAAGAA s panTro4.chr1 224964042 808 + 228333871 tctTCCATGCTCCAGCCCTAAATGG-GTT--ACT--CCTTACTCCGCCACTCTCCTCACCTTGACTCATGCCGGTCCCTCAGCACGACGGGTCCTCC-----------TCCT-GGCTGGCTC----CTTTCTTCTCTCCTTCTATGAGA-CTCTCCTGATCCCCTGAGCCCCAGAGGGTCAGGGCTTCTCCTCTGCCATCCTATGGCACCTACATCTCTCCAC-----GCTT----ACCGTGCAGCCATCA-----CTGTCTGCCTTTCCCACTCAACTGTCATC----------------TCTGTCTTGAAGCTCTGCCTTCGGT----------GTCAAGA-CCGGGCAGCACTCAATGAGTGTTTCCCAAACGGATGCGTAAATGACAGAAGGAATggatgaagagtccctgccctgcctc------aggtcctgagtgaagatgaaatgaaataatgtgtgtggaaggctttgatgagtagagtgctgtgcaGTTGCCTTCAGTTTTAAGTTAGTATGAGG-ACAAAGCA-TTTTTTATACCAATATTTTAGTT-GGTTTCTCAGATACTGAGATTCACACATTTTAGTGAAACAAAACAATATTCTCTT-TTATACCATCCTTGCAGTGTGGGCCCATTATTTGTTGTAGAAGCAGGCCAGGCTTTACGTGGGCTAGAATCTCTGATGGTTGAAA--CTGTGAGCAACAAAACTTTTCATTGCAGAATG--ACAGGTAAGATTCTGAAAGCCAGTGGCA-TGGGAGGGCTCGCTCTGTAACTCGGCTTGGCCCAGGGTATGAATGAGGGAGTTCAGATCCCTGCCTGTGAGGGTGGAGAAGGGAAAATGGTTTCTAAAAGCAGAGGAGGAAAGAGAAAGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226320934 814 - 229942017 tctTCCATGCTCCAGCCCTAAATGG-GTT--ACT--CCTTACTCCACCACTCTCCCCACCTTGACTCATGCCGGTCCCTCAGCACAGCGGGTCCTCC-----------TCCTGGGCTGGCTC----CTTTCTTCTCTCCTTCTATGAGACCTCCCCTGATCCCGTGAGCCCCAGAGGGTCAGGGCTTCTCCTCTGCCATCCTATGGCACCTACATCTCTCCAT-----GCTT---CACCGCGTAGCCATCA-----CTGTCTGCCTTTCCCACTCAACTGTAATC----------------TCTGTCTTGAAGCTCTGCCTTCAGT----------GTCAAGACCCGGGCAGCACTCAATGAATGTTTGCCGAACGGATGCGTAAATGACAGAAGGAATggatgaagagtccctgccctgcctc------aggtcttgagtgaagatgaaatgaaataatgtgtgtggaaagctttgatgagtagagtgctgtgcaGTTGCCTTCAGTTTTAAGTTAGTGTGAGG-ACAAAGCATTTTTTTATACCAATATTTTGGTT-GGTTTCTCAGATACTGAGATTCATACATTTTAGTGAAACAAGACAATATTCTCTT-TTATACTGTCCTTGCAGTGTGGGCCCATTCTTTGTTGTAGAAGCAGGCCAGGCTTTATGTGGGCTAGAACCTCTGATGGTTGAAA--CTGTGAGCAACAAAACTTTTCATTTCAAAATG--AGAGGTAAGATTCTGAAAGTCAGTGGCACTGGGAGGGCTCACTCTGTAACTCGGCTTGGCCCAGGGTATGAATGAGGGACTTCAGACCCCTGCCTGTGAGGGTGGAGAAGGGAAAATGATTTCTAAAAGCAGAGGAGGAAAGAGAAAGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140213362 816 - 143122389 tctTCCATGCTCCAGCCCTAAATGG-GTT--ACT--CCTTACTCCACCACTCTCCTCACCTTGACTCATGCTGGTCTCTCAGCACGACGGGTCCTCC-----------TCCT-GGCTGGCTCCTTTCTTTCTTCTCACCTTCTATGAGACCTCCCCTAATCCCCTGAGCCCCAGAGGGTCGGGGCTTCTCCTCTGCTATCCTATGGCACCTACATCTCTCCAC-----GCTT---CACCGTGCAGCCATCA-----CTGTCTGCCTTTCCCACTCGACTGTAATC----------------TCTGTCTTGAAGCTCTGCCTTCGGT----------GTCAAGACCCGGGCAGCACTCaatgaatgtttgccgaatggatgagtaaatgacagaaggaatgaatgaaGAGTCcctgccctgcctc------aggtcttgagtgaagatgaaatgaaataatgtgtgtggatta-tttgatgagtagagtgctgtgcaGTTGCCTTCAGTTTTAAGTTAGTGTGAGG-ACAAAGCATTTTTTTATACCAATATTTTAGTT-GGTTTCTCAGATACCGAGATTCATACATTTTAGTGGAACAAAACGATATTCTATT-TTATACCATCCTTACAGTGTGGGCCCATTCTTTGTCATAGAAGCAAGCCAGGCTTTCTGTGGGCTAGAACCCCTGATGATTGAAA--CTGTGAGCAACACAACTTCTCATTTCAGAATG--AGAGGTAAGGTTCCGAAAGCCAGCAGCACTGGGAGGGCTCACTCTGTAACTTGGCTTGGCCCAGGGTATGAATGAGGGAGTTCAGATCCCTGCCTGTGAGGATGGAGAAGGGAAAATGGTTTCAAAAAGCAGAGGAGGAAACAGAAAGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16925386 810 - 229590362 tcttgcgagctccagCCCTACGTGG-GTT--ACT--CCTTACTCCGCCACTCTCCTCACCTTGACTCATGCCGGTCCCTCAGCACAATGGGTCCTCC-----------TCCT-GGCTGGCTC----CTTTCTTCTCTCCTTCTATGAGACCTCCCCTGATCCCCTGAGCCCCAGAGGGTCAGGGCTTCTCCTCTGCCACCCTAGGGCACCTACATCTCTCCAT-----GCTT---CACCGCGCAGCCATCA-----CTGTCTGCC-TTCCCACTCGACTGTAATC-----------------CTGTCTTGAAGCTCTGCCTTTGGT----------GTCAAGACCCGGGCAGCACTCAATGAATGTTTGCCGAATGGATGCGTAAATGACAGAAGGAATggatgaagagtctctgccctgcctt------aggtcttgagtgaagatgcagtgaaatcatgtgtgtggaaggctttgatgagtacagcgctgtgcaGTTGCCTGCAGTTTTAAGTTAGTATGAGG-ACAAAGCA-TTTTTTATACCAATATTTTAATT-GGTTTCTCAGATACTGAGATTCATACATTTTAGTGAAACAAAACAGTGTTCTCTT-TCATGCCATTCTTGCAGTGTGGGCCCATTCTTTGTCATAGAAGCAGGCCAGGCTTTAGGTGGACCGGAACCTCTGATGGTTGAAA--CGGTCAGCAACAAAACTTTTCATTTCAAAACG--AGAGGTCAGATTCTGAAAGCCAATGGCACTGGGAGGGCTCACTCTGTCACTTGGCTTGGCCCAGGGTATGAATGAGGGAGTTCAGATCCCTGCCTGGGAGGATGGAGAAGGGAAAATGGTTTCTAAAAGCAGAGGCGGACAGAGAAGGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223688616 810 - 227556264 tcttccgagctccagCCCTACGTGG-GTT--ACT--CCTTACTCCGCCACTCTCCTCACCTTGACTCATGCCGGTCCCTCAGCACAATGGGTCCTCC-----------TCCT-GGCTGGCTC----CTTTCTTCTCTCCTTCTATGAGACCTCCCCTGATCCCCTGAGCCCCAGAGGGTCAGGGCTTCTCCTCTGCCATCCTAGGGCACCTACATCTCTCCAT-----GCTT---CACCACGCAGCCATCA-----CTGTCTGCC-TTCCCACTCGACTGTAATC-----------------CTGTCTTGAAGCTCTGCCTTTGGT----------GTCAAGACCCGGGCAGCACTCaatgaatgtttgccgaatggatgcgtaaatgacagaaggaatggatgaaGAGTCTCTGCCCTGCCTT------AGGTCTTGAGTGAAGATGCAGTGAAATCATGTGTGTGGAAGGCTTTGATGAGTACAGCGCTGTGCAGTTGCCTGCAGTTTTAAGTTAGTATGAGG-ACAAAGCA-TTTTTTATACCAATATTTTAATT-GGTTTCTCAGATACTGAGATTCATACATTTTAGTGAAACAAAACAGTGTTCTCTT-TCATGCCATTCTTGCAGTGTGGGCCCATTCTTTGTCATAGAAGCAGGCCAGGCTTTAGGTGGACCGGAACCTCTGATGGTTGAAA--CGGTCAGCAACAAAACTTTTCATTTCAAAACG--AGAGGTCAGATTCTGAAAGCCAATGGCACTGGGAGGGCTCACTCTGTCACTTGGCTTGGCCCAGGGTATGAATGAGGGAGTTCAGATCCCTGCCTGGGAGGATGGAGAAGGGAAAATGGTTTCTAAAAGCAGAGGCGGACAGAGAAGGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16738908 810 - 220367699 TCTTCCGAGCTCCAGCCCTACGTGG-GTT--ACT--CCTTACTCCCCCACTCTCCTCACCTTGACTCATGCCGGTCCCTCAGCACAATGGGTCCTCC-----------TCCT-GGCtggctc----ctttcttctctccttctatgAGACCTCCCCTGATCCCCTGAGCCCCAGAGGGTCAGGGCTTCTCCTCTGCCATCCTATGGCACCTACATCTCTCCAT-----GCTT---CACCGCGCAGCCATCA-----CTGTTGGCC-TTCCCACTTGACTGTAATC-----------------CTGTCTTGAAGCTCTGCCTTTGGT----------GTCAAGACCCGGGCAGCACTCAATGAATGTTTGCCGAATGGATGCGTAAATGACAGAAGGAATGGATGAAGAGTCTCTGCCCTGCCTC------AGGTCTTGAGTGAAGATGCAGTGAAATCATGTGTGTGGAAGGCTTTGATGAGTACAGCGCTGTGCAGTTGCCTGCAGTTTTAAGTTAGTATGAGG-GCAAAGCA-TTTTTTATACCAATATTTTAATT-GGTTTCTCAGATACTGAGATTCACACATTTTAGTGAAACAAAACAGTATTCTCTT-TCATACCGTTCTTGCAGTGTGGGCCCATTCTTTGTCATAGAAGCAGGCCAGGCTTTAGGTGGGCCAGAACCTCTGATGGTTGAAA--CGGTCAGCAAcaaaacttttcatttcaaaacG--AGAGGTGAGATTCTGAAAGCCAGTGGCCCTGGGagggctcactctgtcacttggCTTGGCCCAGGGTATGAATGAGGGAGTTCAGATGCCTGCCTGTGAGGATGGAGAAGGGAAAATGGTTTCTAAAAGCAGAGGCGGACAGAGAAGGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82537205 807 + 85787240 tcttccgagctccagCCCTACATGG-GTT--ACT--CCTTACTCCGCCACTCTCCTCACCTTGACTCATGCTGGTCCCTCAGCACAATGGCTCCTCC-----------TCCT-GGCTGGCTC----CTTTCTTCTCTCCTTCTATGAGACCTCCCCTGATCCCCTGAGCCCCAGAGGGTCTGGGCTTCTCCTCTGCCATCCTATGGCACCTACATCTCTCCAT-----GCTT---CACCATGCAGCCACCA-----CTGTCTGCC-TTCCCACTCGACTGTAATC-----------------CTGTCTTGAAGCTCTGCCTTTGGT----------GTCAAGACCCGGGCAGCACTCGATGAATGTTTGCCGAATGGATGCGTAAATGACAGAAGGAATGGATGAAGAGTCTCTGCCCTGCCTC------AGGTCTTGAGTGAAGATGCA-TGAAATCATGTGTGTGGAAGGCTTTGATGAGTAGAGTGCTGTGCAGTTGCCTGCAGTTTTAAGTTAGTATGAGG-GCAAAGCA-TTTTTTATACCAATATTTTAATT-GGTTTCTCAGATACTGAGATTCATACATTTTAGTGAAACAAAACAGTGT--TCTT-TTATACCGTTCTTGCAGTGTGGGCCCATTCTTTGTCATAGAAGCAGGCCAGGCTTTAGGTGGGCCAGAACCTCTGATGGTTGAAA--TGGTCAGCAACAAAACTTTTCATTTCAAAACA--AGAGGTAAGATTCTGAAAGCCAATGGCACTGGAAGGGCTCACTCTGTCACTTGGCTTGGCCTGGGGTATGAATGAGGGAGTTCAGATCCCTGCCTGGGAGGATGGAGAAGGGAAAATGGTTTCTAAAAGCAGAGGCGGACAGAGAAGGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14219067 824 - 49578535 GCTTCCATGCTCCAGCCCTAAGTGGAGTT--ACT--GCTTACTCCACATCTTTCCTCACCTTGACTCATG-GGGTCCCTCAGCGCGACAGGTCCCCC-----------TCCT-GGCTGGCTG----CTTTCTTCTTGCCTTCTTAGCGACCTCTCCTGATCCACTGAGCCCCAGAGGGTC-GGGCTTCTCCTCTGCCATTTTATGGCACCTACATCCGTCCAT-----GCTTCAGCACCACGC---------------GCCTGCCTTTCTCGCTGGACTGTAATCACTCTGCAGCGACACCTCTGTCCTGAAGCTCGGCCTTCCGT----------GTCAAGACCAGAGAAGCACTCAATGCATG-TTGCTGAATGGGTGCGTAAATGAAAGAAGGCATGAATGaagaatgcctgccctgtctcaggcgtaggtcttgactgaagatgaaatgaaatattgtgtgtggaaggctttgATGAGCAGAGGGCTGCGTAGTTGCCTTCAGTTTTAAGTTAGGATGAGG-ACAAAGCA-TTGTTTATACCAATATTTTAGTT-GGTTTCCCAGATACTGAGGTTCATACG-TTTAGTGAAACATATCAATGTTCTCTT-TTGTACTGTCCTTGCAGCGTGGGCCCATTCTTTGTGACACAAGCAGGACAGGCTTTAGGTGGGCTAGAACCTCTGATGTTTGAAG--CTGTGGGCAGTAAAACTTTTCATGTCAAAATGAAAGAGGCGAGGTTCTGAAAGCCCACGCCACTGCAAGGGATGA-TCTGTAACTTGGCTTTACTGAGGGTGTGAATGAGGGAGTTCAGAACCCTGCCTGAAAGGATGGAGAAGGGAAATTGGTTTGT-AAAGCAGAGGATGAAAGAGGAAGAT i calJac3.chr19 I 315 C 0 s canFam3.chr7 36367949 829 + 80974532 TCCCCCATGTCCACGAATAGAAATG-GTTCCACTTACCTTACTGGATTACTC----CACCAAGATTCACACTGG-CCCTCAACCCAGCATGTCCTCCTTTAATCCCCGTCTT-GGCTAATTC----CTTCCTTCT---------------CTTCCCTGATTCCATGCACCT----GGGTCAGAGTCCTTCCTCTACAATTCTGTGGCTTCTGCATCTGTCCGCCCTAGGCTTCATCCCCACAAAGACATGGTGTGCTCGTCTGCCTCTCTTGCGAGACTGTAATC--------------ACCTTGACATGGACTGCCCCCTTCCCTCATCTTGAAGGTCAAGACTAGGACCCTGCTCTGCAGATGTTTGCTGAATGAATGCATGAATGAAAGCAAGAAAGAATGTAGAACCTTTGCCCAGCCTCCATTGACTGTCTTGAGCGAAGATAAAATGAAA----GACTGTGAAAGGCTTTGATGTGTGGAGAGTGTTGTGGTGGCCTTGAGCTTTAAATTTGTATGAGGCACCATGTA-CTTTTAGTTCCAATATTTTAGGCAGGTTTTGGGGGCACTAAGAATCAAAACTTTTAGTGAACTGAAACAGTCTTCTTTTCTTGTACTGTCCTTGCAGTCTGGGTCCATCCTTTGTCACAGAAGCAGGACAGGCTTTATGTGGGCCAGAGGCTCTACTGTTGGAAAATCTGTTAGTGACAAAACATTTCATTCCAAAATG--A----TAAGGCTCTGAAAGCCAGTGCCCCTGGGAGGGATCACTCTGTAACTTAACTGGGCCTGAGG--TGAGCTGGTGATTGCCGATCCGTGCCTGAGAGGATGGGAAAGGAAAAGAGCTTTCTAAAGTCATAGGTGGGTGGGGAGACAA i canFam3.chr7 C 0 I 48 e mm10.chr1 178801964 507 + 195471971 I a score=432534.000000 s hg38.chr1_KI270759v1_alt 210240 168 + 425601 TCATCATGGAGGCAGCATGGTCAGGGAAGG----GGCAGAGGGTGTTGCATCTGACAAAGCTGGGTTTGGACGATAGCCTCATACTTGGGTTTCTGTTGTATCTCATGAGTCCTCTCCCTGGAGGAGTATTTGGATTCTATTCTGCTTCTCCCCTGAGTTTGTTTTCACGGT s panTro4.chr1 224964850 168 + 228333871 TCATCATGGAGGCAGCATGGTCAGGGAAGG----GGCAGAGGGTGTTGCATCTGACAAAGCTGGGTTTGGACGATAGCCTCATACTTGGGTTTTTGTTGTATCTCATGAGTCCTCTCCCTGGAGGAGTATTTGGATTCTATTCTGCTTCTCCCCTGAGTTTGTTTTCACGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226321748 168 - 229942017 TCCTCATGGAGGCAGCGTGGTCAGGGAAAG----GGCAGAGGGTGTTGAGTCTGACAAAGCTGGGTTTGGACGATAGCCTCATACTTGGGTTTTTGTTGTATCTCATGAGTCCTCTCCCTGGAGGAGTATTTGGATTCTATTCTGTTGCTCCCCTGAGTTTGTTTTCATGGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140214178 168 - 143122389 TCATGATGGAGGCAGCACGGTCAGGGAAGG----GGCAGAGGGTGTTGAGTCTGACAAAGCTGGGTTTGGACGATAGCCTCATACTTGGGTTTTTGTTGTATCTCATGAGTCCTCTTCCTGGAGGAGTATTTGGATTCTATTCTGCTTCTCCCCTGAGTTTGTTTTCATGGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16926196 149 - 229590362 TCATCACGGAGGCAGC-----------------------AGAGGGTTGAGTCTGACAAAGCTGGGTTTGGACTATAGCCTGATACTTGGGTTTTTGTTACATCTCACGTCTCCTCTCCGTGGAGGAGTATCTGGATTCGATTCTGCCTCTCCCCTGAGTTTGTTTTCTTGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223689426 149 - 227556264 TCATCACGGAGGCAGC-----------------------AGAGGGTTGAGTCTGACAAAGCTGGGTTTGGACTATAGCCTGATACTTGGGTTTTTGTTACATCTCACGTGTCCTCTCCGTGGAGGAGTATCTGGATTCGATTCTGCCTCTCCCCTGAGTTTGTTTTCTTGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16739718 168 - 220367699 TCATCGCGGAGGCAGCATGGTCAGTGAGGG----GGCAGAGAGGGCTGAGTCTGACGAAGCTGGGTTTGGACTAGAGCCTGATACTTGGGTTTTTGTGACATCTCACGAGTCCTCTCCGTGGAGAAGTACCTGGATTCGATCCTGCCTCTCCCCTGAGTTTGTTTCCTTGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82538012 167 + 85787240 TCATCACGGAGGCAGCATGGTCAAGGAGCG----GGCAGAGAGGG-TGAGTCTGACAAAGCTGGGTTTGGACTATAGCCTGATACTTGGGTTTCTGTTGCATCTCATGAGTCCTCTCCATGGAGGAGTATCTGGATTCGATTCTGCCTCTCCCCTGAGTTTGTTTTCTTGGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14219891 164 - 49578535 TCATCACAGAAGTTGCGTGGTCAGTGGAGT----GGCAGAGGGCACTGAGACTGGC-AGGCTGTGTTTGTGCCAT--CCTCATACGTGGGTTTTGGTTGCATCTCGGGAGTCCTCTTCCTGGAGGATTATTTGGATTCTGTTCTGCTTCT-TCCTGAGTTTATTTTCATGGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178802471 134 + 195471971 TCATCATGGAAG-AGTCTAGTCAATAGAGG----AGCAAAGATTTTTGAGTTTGACAAGCACAACTCTGGATCCCTGCTTTGT---TGAGTCTTTGCTGCAG-TCAGGAGCTCCCTC---------------------------GCCTCT-GCCTGTGTTTGTTTCTGT-GT i mm10.chr1 I 507 C 0 s canFam3.chr7 36368826 131 + 80974532 TCATCCTGGA-GCAGCACAGTCCAGAAGGGTGCTagcaaggactctggtgcctgacacacctgggtttggattccagccttgTATTTGGGTCTCTGCTGTGCATCATGAGCCCTTACAAGGGAGG----------------------------------------TTACGGT i canFam3.chr7 I 48 C 0 a score=314175.000000 s hg38.chr1_KI270759v1_alt 210408 107 + 425601 GGGACTATCCAGGACTAAAGAGAATGGCACCGTATTGCTCTCTCTTTCTGAACCCGGACTTGCAGGCCATATCTGGATTTATCCTTTTTATCAGCAGAATGGTAC----AT s panTro4.chr1 224965018 107 + 228333871 GGGACTATCCAGGACTAAAGAGAATGGCACCGTATTGCTCTCTCTTTCTGAACCCAGACTTGCAGGCCATATCTGGATTTATCCTTTTTATCAGCAGAATGATAC----AT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226321916 107 - 229942017 GGGACTATCCAGGACTAAAGAGAATGGCACCGTATTGCTCTCTCTTTCTGAACCCAGCCTTGCAGGTCATATCTGGATTTATCTTTTTTATCAGCAGAATGATAC----AT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140214346 103 - 143122389 GGGACTATCCAGGACTAAGGAGAACGGCACCGTATTGCTCTC----TCTGAACCCAGCCTTGCAGGTCATATCTGGATTTATCCTTTTTATCAGCAGAATGATAC----GT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16926345 107 - 229590362 GGGACTATCCAAGACTAAGGAGAATGACGCCATATTGCTCTCCCTTTCTGAACCCAACCTTGCAGGACGTATCTGGATTTATCCTTTTTATCAGCAGAATGATAC----AT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223689575 107 - 227556264 GGGACTATCCAAGACTAAGGAGAATGACGCCATATTGCTCTCCCTTTCTGAACCCAACCTTGCAGGACGTATCTGGATTTATCCTTTTTATCAGCAGAATGATAC----AT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16739886 107 - 220367699 GGGACTATCCAAGACTAAGGAGAATGACGCTGTATGGCTCTCCCTTTCTGAACCTAGCCTTGCAGGCCGTGTCTGGATTTATCCTTTTCATCAGCAGAATGATAC----AT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82538179 107 + 85787240 GGGACTATCCAAGACTAAGGAGAATGACGCCGTATTGCTCTCCCTTTCTGAACCCAGCCTTGCAGGCCGTATCTGGATTTATCCTTTTTATCAGCAGAATGATAC----AT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14220055 105 - 49578535 GGGACTATCCAAGACTGAGGA-AATGACACGGTGCCGCTCTCCCTCTCTGGGCTCGGCTTTGCA-GCCATAACCAGATGTATCCTTTTTATCAGCAGAACGATCC----AT i calJac3.chr19 C 0 C 0 s mm10.chr1 178802605 109 + 195471971 AGGACTGTCCACCACTAAGGAGAGTGAGACCTGATTGTCCACGCTCTTTCAGCCTAGCCTTGGGGACCAAAGCAGGAGCCACCCGTTC--TCCACAGACTGGGCTTGTGGT i mm10.chr1 C 0 C 0 e canFam3.chr7 36368957 0 + 80974532 C a score=2613911.000000 s hg38.chr1_KI270759v1_alt 210515 719 + 425601 TTCCCATAGCAATGCTTGAACTCTG------GTCCGTGATGAAGCAAGC-TCTTCCATGGTGTTAGAGTCTGTTTTTCCTTCAGAAAATGCTATTT-----GCAGAACGGCAACAAC--AA---AACGTGTAACAGGAATTGTCCGTTCCCATGGCCAGTCCTCATGTAGAGCCACAAGATGGCGCAGAGGATGACATGAAATCATGTACGCGAGCGTGATTTGCTACTAGGCAGCTCTGTAGGGCTGTATGTATTGATATCACATGCGTCTATATGAACGCCCCGCTGCAGCTGCCTTTGCTAT-ACAGTGAATACACTGTGGGTCTATTATTCGCCTCTTCAGATCCAGCCCAGGAGTTGGTGCAGACTCATTTTTCACTTTCCTTTGACCCTGGGTGTCTCCACAAATGAACCACCTGCTGTGTCTTG--GTG-GGGGTGGAGATGTGGGGTGAAGTAATGAGCCCGCAAGGCCTGTCTGTGCCTATTGGCTGCTCTAAAGGGAAGTTGAGGAATACTGC-AAAGCCACAAATCTGAGATGTCAGCTCATAAATCTGTAAGCTCCTTGCTTAAGTAATACGCTCCTTGACGGCCAAAACTGTCATTTGCACATTCTCTTCAGCTGAACACAAAAGTTCCGGTTACCAGACTGTCCCTGGATACTGGGGACTAAAAGCTGGTGAT--TGGCGGAGTTTGGGGGT--GGGGAGGGGGCGCTGGGCTGATTG------------CCCTGGCTGCTCC s panTro4.chr1 224965125 719 + 228333871 TTCCCATAGCAATGCTTGAACTCTG------GTCCATGATGAAGCAAGC-TCTTCCATGTTGTTAGAGTCTGTTTTTCCTTCAGAAAATGTTATTT-----GCAGAACAGCAACAAC--AA---AACGTGTAACAGGAATTGTCCATTCCCATGGCCAGTCCTCATGTGGAGCCACAAGATGGCGCAGAGGATGACATGAAATCATGTACGTGAGCGTGATTTGCTACTGGGCAGCTCTGTAGGGCTGTATGTATTGATACCACATGTGTCTATATGAACGCCCCGCTGCTGCTGCCTTTGCCAT-ACAGTGAATACACCGTGGGTCTATTATTCGCCTCTTCAGGTCCAGCCCAGGAGTGGGTGCAGACTCGTTTTTCACTTTCCTTTGACCCTGGGTGTCTCCACAAATGAACCACCTGCTGTGTCTTG--GTG-GGGGTGGAGATGCGGGGTGAAGTAATGAGCCCGCAAGGCCTGTCTGTGCCTATTGGCTGCTCTAAAGGGAAGTTGAGGAATACTGC-AAAGCCACAAATCTGAGATGTCAGCTCATAAATCTGTAAGCTCCTTGCTTAGGTAATACGCTCCTTGACAGCCAAAACTGTCATTTGCACATTCTCTTCAGCTGAACACAAAAGTTCCGGTTACCAGACTGTCCCTGGATACTGGGGACTAAAAGCTGGTGAT--TGGGGGGGTTTGGGGGT--GGGGAGGGGGCGCTGGGCTGATTG------------CCCTGGCTGCTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226322023 719 - 229942017 TTTCCATAGCAATGCTTGAACTCTG------GTCCGTGATGAAACAAGC-TCTTCCATGGTGTTAGGGTCTGTTTTTCCTTCAGAAAATGTTATTT-----GCAGAACAACAACAAC--AA---AACGTGTAATAGGAATGGTCCATTCCCATGGCCAGTCCTCATGCAGAGCCACAAGATGGCACAGAGGATGACATGAAATCACGTACGTGAGCGTGATTTGCTAATAGGCAGCTCTGTAGGGCTGTATGTATTGATATTACTTGCATCTATATGAACGCCCCGCTGCAGCTGCCTTTGCCAT-AGAGTGAATGCACTGTGGGTCTATTATTCACCTCTTCAGGTCCAGCCCAGGAGTTGGTGCAGGCTCATTTTTCACTTTGCTTTGACCCTGGGTGTCTCCACAAATGAACCACCTGCTGTGTCTTG--GTG-GGGGGGGAGATGTGGGGTGAAGTAATGAGCCCGCAAGGCCTGTCTGTGCCTATTGGCTGCTTTAAAGGGAAGTTGAGGAATACTGC-AAAGCCACAAATCTGAGATGTCAGCTCATAAATATGTAAGCTCCTTGCTTAGGTAATAGGCTCCTTGACAGCCAAAACTGTCATTTGCACATTCTCTTCAGCTGAACACGAAAGTTCCGGTTGCCAGACTGTCCCTGGATACTGGGGACTAAAAGCTGGTGAC--TGGGGGGGTTTGGGGGT--GGGGAGGGGGCGCCGGGCTGATTG------------CTCTGGCTGCTCC i ponAbe2.chr1 C 0 I 4613 s nomLeu3.chr5 140214449 719 - 143122389 TTTCCATAGCAGTGCTCGAACTCTG------GTCCGTGATGAAACAAGC-TCTTCCATGGTGTTAGGGTCTGTTTTTCCTTCAGAAAATGTTACTT-----GCAGAACAACAACAAG--AA---AACGTGTAATAGGAATGGTCCATTCCCATGGCCAGTCCTCATGCACAGCCACAAGACGGTGCAGAGGATGACATGAAGTCATGTACGTGAGCGTGATTGGCTAATAGGCAGCTCTGTAGGGCTGTATGTATTAATATTACATGCATATACATGAACGCCCCGCTGCAGCTGCCTTTGCCAT-AGAGTGAATACACTGTGGGTCTATTGTTCACCTCTTCAGGTCCAGCCCAGGAGTTCGTGCAGTCTCATTTTTCATTTTCCTTTGGCCCTGGGTGTCTCCACAAATGAACCACCTGCTGTGTCTTG--GTG-GGGGTGGAGATGTGGGGTGAAGTAACGAGCCCGCAAGGCCTGTCTGTGCCTATTGGCTGCTCTAAAGGGAAGTTGAGGAATACTGC-AAAGCCACACATCTGAGATGTCAGCTCATAAATATATAAGCTCCTTGCTTAGGTAATAGGCTCCTTGACAGCCAAAACTGTCACTTGCACATTCTTTTCAGCTGAACACAGAAGTTCCGGTTGCCAGACTATCCCTGGATACTGGGGACTAAAATCTGGTGAC--TGGGGGGGCTTGGGGGT--GGGGAGGAGGCGCTGGGCTGATTG------------CTCTGGCTGCTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16926452 718 - 229590362 TTTCCATAGCAATGCTTGAACTCTG------GTCCGTGATGCAACAAGC-TCCTCCATGGTGGTAGAGTTTGTTTTTCCTTCAGAAAATGTGATTT-----GCAGAACAACAACAAG--AA---AACGTTTAATAGGAATGGTCCGTTCCCATGGCCAGTCCTCATGTAGAGCCACAAGATGGTGCAGAGGATGACATGAAATGATGTGCGGGAGCGTGATTTGCTAACAGGCAGCTCTGTAGGGCTGTATGTATTAATATTACATGCATCGATAGGAGCG-CCTGCTGCAGCTGCCTTTGCCAT---AGTGAATACACTGTGGGTCTATTATTCACCTCTTCAGGTCCAGCCCAGGAGTTTGTGTAGGCTCATTTTTCACTTTCCTTTGACCCTGGATGTCTCCACAAATGAACCACCTGCTGTGTCTTG--GTG-GGGGTGGAGATGTGGGGTGAAGTAATGAGCCCGCAAGGCCTGTCTGTGCCTATTGGCTGCTCTAAAGGGAAATTGAGGAATACTGC-AAAGCCGCAAATCTGAGATGTCAGCTCATAAATATGTAAGCTCCTTGCTTAGGTAATAAGCTCCCTGACAGCCAGAACTGTCATTTGCACATTCTCTTCAGCTGAACACAAAAGTTCCGGTTGCCAGACTGCCCCTGGATACTGGGGACTAAAAGCTGGTGATTGTGGAGGGGTGGGGGTGT--GGGGAGGGGGCGCTGGGCTGACTG------------CTCTGGCTGCTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223689682 718 - 227556264 TTTCCATAGCAATGCTTGAACTCTG------GTCCGTGATGCAACAAGC-TCCTCCATGGTGGTAGAGTTTGTTTTTCCTTCAGAAAATGTGATTT-----GCAGAACAACAACAAG--AA---AACGTTTAATAGGAATGGTCCGTTCCCATGGCCAGTCCTCATGTAGAGCCACAAGATGGTGCAGAGGATGACATGAAATGATGTGCGGGAGCGTGATTTGCTAACAGGCAACTCTGTAGGGCTGTATGTATTAATATTACATGCATCGATAGGAGCG-CCTGCTGCAGCTGCCTTTGCCAT---AGTGAATACACTGTGGGTCTATTATTCACCTCTTCAGGTCCAGCCCAGGAGTTTGTGTAGGCTCATTTTTCACTTTCCTTTGACCCTGGATGTCTCCACAAATGAACCACCTGCTGTGTCTTG--GTG-GGGATGGAGATGTGGGGTGAAGTAATGAGCCCGCAAGGCCTGTCTGTGCCTATTGGCTGCTCTAAAGGGAAATTGAGGAATACTGC-AAAGCCGCAAATCTGAGATGTCAGCTCATAAATATGTAAGCTCCTTGCTTAGGTAATAAGCTCCCTGACAGCCAGAACTGTCATTTGCACATTCTCTTCAGCTGAACACAAAAGTTCTGGTTGCCAGACTGCCCCTGGATACTGGGGACTAAAAGCTGGTGATTGTGGAGGGGTGGGGGTGT--GGGGAGGGGGCGCTGGGCTGACTG------------CTGTGGCTGCTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16739993 718 - 220367699 TTTCCATAGCAATGCTTGAACTCTG------GTCCGTGATGAAACAAGC-TCTTCCATGGTGGTagagtttgtttttccttcagaaaatgtgattt-----gcagaacaacaacaag--aa---aacgtTTAATAGGAATGGTCCGTTCCCATGGCCAGTCCTCATGTAGAGCCACAAGATGGTGCAGAGGATGACATGAAATGATGTGCGGGAGCATGATCTGCTAACAGGCAGCTCTGTAGGGCtgtatgtattaatattatatgCATCGATAGGAGCG-CCTGCTGCAGCTGCCTTTGCCGT---AGTGAATACACTGTGGGTCTATTATTCACCTCTTCAGgtccagcccaggagtttgtgtaggctcatttttcactttcctttgaCCCTGGATGTCTCCACAAATGAACCACCTGCTGTGTCTTG--GTG-GGGGTGGAGATGTGGGGTGAAGTAATGAGCCCGCAAGGCCTGTCTGTGCCTATTGGCTGCTCTAAAGGGAAATTGAGGAATACTGC-AAAGCCGCAAATCTGAGATGTCAGCTCATAAATATGTAAGCTCCTTGCTTAGGTAATAAGCTCCCTGACAGCCAGAACTGTCATTTGCACATTCTCTTCAGCTGAACACAAAAGTTCCGGCTGCCAGACTGCCCCTGGATACTGGGGACTAAAAGATGGTGAttgtggaggggtgggggtgt--ggggagggggcgcTGGGCTGACTG------------CTCCGGCTGCTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82538286 718 + 85787240 TTTCCATAGCAATGCTTGAACTCTG------GTCCGTGATGAAACAAGC-TCCTCCATGGTGTTAGAGTTTGTTTTTCCTTCAGAAAATGTGATTT-----GCAGAACAACAACAAG--AA---AACGTTTAATAGGAATGGTCCGTTCCTATGGCCAGTCCTCATGTAAAGCCGCAAGATGGTGCAGAGGATGACATGAAATGATGTACGGGAGCGTGATTTGCTAACAGGCAGCTCTGTAGGGCTGTATGTATTAATATTACATGCATCGAGAGGAGCG-CCGGCTGCAGCTGCCTTTGCCGT---AGTGAATCCACTGTGGGTCTATTATTCACCTCTTCAGGTCCAGCCCAGGAGTTTGTGTAGGCTCATTTTTCACTTTCCTTTGGCCCTGGATGTCTGCACAAATGAACCACCTGCTGTGTCTTG--GTG-GAGGTGGAGATGTGGGGGGAAGTAATGAGCCCGCAAGGCCTGTCTGTGCCTATTGGCTGCTCTAAAGGGAAATTGGGGAATACTGC-AAAGCCGCAAATCTGAGATGTCAGCTCATAAATATGTAAGCTCCTTGCTTAGGTAATAAGCTCCCTGACAGCCAGAACTGTCATTTGCACATTCTCTTCAGCTGAACACAAAAGTTCTGGTTGCCAGACTGCCCCTGGATACTGGGGACTAAAAGCTGGTGATTGTGGAGGGGTGGGGGTGT--GGGGAGGGGGCGCTGGGCTGACTG------------CTCCGGCTGCTCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14220160 714 - 49578535 TTTTCATCACAGTGCTTGAACTCTG------GTCGGTGATGAAACGAGC-TCTTCCATGCTGTTAGGGTCTGTTTTTCCTTCAGAAAATGTTCTTT-----GCAGAAAAACAACAACAAAA---AATGTTTAACAGGAATGGTCTATTCCAATGGCCAGTCTTCAGGCAGAGCCACAAGATGGTGCAGAGGATGACGTGAAATCACGTACGCGAGCGTGTTTTGCTGATAGGCGGCTCTGCAGGGCTGTGTATATTAATATTACATGCATCTTCATGAACG-CCCACTGCAGCTGCCTTTGCCGC---AGCGAATACACTGTGGGTCTGTTATTCACCTCTTCAGGTCCAGCCCAGGAGTTTGTGTAGGCTCATTTTTCAGTTTCCTTTGACTCTGGATGTCTCCACAAATGAACCACCTGCTGTGTCTTGGTGTG-GGGGTGGAGGTGTGGGATGAAGTAATGAGCCT-----GCCTTTCTGTGCCTTTTGGCTGCTCTGAAGGGAAATTGAGGAATACTGC-AAAGCCACAAATCTCAGATGGCAGCTCATAAATATGTAAGCGCCTTGCTTAGGTAATAAGCTCCTTGACAGCCAAAACTGTCATTTGCACATTCTCTTCAGCCGAACACAAAA-TTCCGGTTGCCAGACTGTCCCTGGATACTGGGGACTAAAAGCTGGTGAT--TGGGGGGGTTTGGAGGGCAGGGGAGTGGGCACTGGGCTGATTG------------CTCTGGCGGCT-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178802714 648 + 195471971 TTCCCACAACACCGTGTGAGCTCAG------GTTTCTGTTGAAATGGACTTCTTCCTTACTGTAAAAGTCCA-TTGTCCTGCAGAAAATTTTCTTTCAGGAAAAAAACAAAACCAAA--AA---CATGTTTGGCAGGAAAGGGTGGTTCCTGGGGGCAGTCCTGATATAAAGCCACAAGATGGTCCAGGGAGCCCTGTGCAGT---GTACACGTGTGTGCTTTGTTTATGGACCACTCGGTAGGGATGCGGATGCTCATATC-----TGTCTACAG------------GCAACTGCCTTTGCCAGCGGGGCAAGGATTCTATGGA----------------TCAGGTTCAAGACAGCAGGCTGTG-AAACTTGGTTTTCATGTTCTTTTGACCCTGGATATCTCCACAAATGAGCCACCTGCCATATCTGG--GTGCTGGGTGGATGTGTGTAGTGAAGCCACAAGTCTGCAAGGCCTTTCTCTGCTT-------------AAGGGACAGGGAGGAATCCCAC-AAATCCACAAATCCAAGATGTCAGCTCATAAATATGTAAGGTCTCTGTTTAGGTAATAAGCTC---GATAGCCCAGGCTGTCATTTGCACATCCTCTTCAGCTGAACACAAAAGTTCC--CTGCCA-----------GATACTGAGAAA-GGAAGCTGGAGGA------------TGGGGGC--TGGGAGGCGG-GCCAGGCTGATGG------------CTCGGGCTATTCT i mm10.chr1 C 0 I 9 s canFam3.chr7 36368957 682 + 80974532 TTTCCCTAGCAATGCTCGAACTCCGAAACAAGCTCATGATGAAACAAGC-TCTTCCTTGGCATTAGGG-CGGTTTTTCCTTTAGAAAATGTTCTTT-----GCAGAGGAGTGGGGGA--AATGGCATGTCTGATAGAAATAGTCATTCCCAGTGGCCAGT------GGAGAGCCACAGGATGGC-CAGAGGGTGAC-TGAGGTCAAGTCCACGAGCAGGCTTTGTTCATAGACAACT-TGTAAGGCTGTGTATATGAATTCTGCAGACATATATGAAAATG-CCCATTGTGGCTATCTTTGCAGA--------------------TCTATTATTCACCTCTTCAGGTCCAGCCCAGGAAT--GTAGAGGCT---------------------CTCAGATATCTCCACAAATGAGCCGCCCACTGCATCTTGACATG-GGGCTGGAAATGTGGTGTGAGGTCATGAGCCTGCAAGGCCTTTCTATGCCCATTGGCTGCACGAAAGGGAAATTGAGGAATTCTGCAAAAGCCACAAATATAAGATGTCAGCTCATAAATATGTAAACTCCTCTCTTAGGTAATAAGCTCCCTGACAGCCAAAACTGTCATTTGCACATTCTCGTCAGCTGAACGCAG-AGTTCCAGTTGCCAGATTGTCCCTGGATGCTG-GGACTCAGAGCTGGGGAG--TGGGG------AGGAGT--GAGAAGGGGAAGCTGGGCTGATTGTTCCTTAAAGATCTCTGGCTGCTCT i canFam3.chr7 C 0 C 0 a score=8148.000000 s hg38.chr1_KI270759v1_alt 211234 3 + 425601 CCA s panTro4.chr1 224965844 3 + 228333871 CCA i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16927170 3 - 229590362 CCA i rheMac3.chr1 C 0 I 8 s macFas5.chr1 223690400 3 - 227556264 CCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16740711 3 - 220367699 CCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539004 3 + 85787240 CCA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178803371 3 + 195471971 CCA i mm10.chr1 I 9 C 0 s canFam3.chr7 36369639 3 + 80974532 CCA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14220874 0 - 49578535 C e nomLeu3.chr5 140215168 0 - 143122389 C e ponAbe2.chr1 226322742 4613 - 229942017 I a score=-1960.000000 s hg38.chr1_KI270759v1_alt 211237 5 + 425601 CAGCT s panTro4.chr1 224965847 5 + 228333871 CAGCT i panTro4.chr1 C 0 C 0 s calJac3.chr19 14220874 2 - 49578535 ---CT i calJac3.chr19 C 0 C 0 s mm10.chr1 178803374 2 + 195471971 CA--- i mm10.chr1 C 0 C 0 s canFam3.chr7 36369642 4 + 80974532 TGGC- i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16927173 8 - 229590362 I e chlSab2.chr25 82539007 0 + 85787240 C e papAnu2.chr1 16740714 0 - 220367699 C e macFas5.chr1 223690403 0 - 227556264 C e nomLeu3.chr5 140215168 0 - 143122389 C e ponAbe2.chr1 226322742 4613 - 229942017 I a score=-3148.000000 s hg38.chr1_KI270759v1_alt 211242 10 + 425601 CCACGGCTGC s panTro4.chr1 224965852 10 + 228333871 CCATGGCTGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226327355 10 - 229942017 CCACGGCTGC i ponAbe2.chr1 I 4613 C 0 s nomLeu3.chr5 140215168 10 - 143122389 CCACGGCTGC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223690403 8 - 227556264 -CCCGACCG- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16740714 8 - 220367699 -CCCGACCG- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539007 6 + 85787240 -CGCTGC--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14220876 10 - 49578535 CCATGGCTGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178803376 4 + 195471971 ---CTGC--- i mm10.chr1 C 0 C 0 s canFam3.chr7 36369646 2 + 80974532 -----GC--- i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16927173 8 - 229590362 I a score=159488.000000 s hg38.chr1_KI270759v1_alt 211252 54 + 425601 TGCTTTCACCCCCACCTGACCATGGTCGCAGTGGGGGG---CTTTCTCTTGGTATTT- s panTro4.chr1 224965862 54 + 228333871 TGCTTTCACCCCCGCCTGACCGTGGTCGCAGCGGGGGG---CTTTCTCTTGGTATTT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226327365 54 - 229942017 TGCTTTCATCCCCACCTGACCGTGGTCGGAGTGGGGGG---CTTTCTCTTGGTATTT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140215178 54 - 143122389 TGCTTTCACCCCCACCTGACCATGGTCACAGCGCGGGG---CTTTCTCTTGGTATTT- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16927181 54 - 229590362 TGCTTTCATCCCCACCCGACCGTGGTCAGAGGGGGGCT---TTCTCTCTTGGTATTT- i rheMac3.chr1 I 8 C 0 s macFas5.chr1 223690411 54 - 227556264 TGCTTTCATCCCCACCCGACCGTGGTCAGAGGGGGGCT---TTCTCTCTTGGTATTT- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16740722 54 - 220367699 TGCTTTCATCCCCACCCGACCGTGGTCAGAGGGGGGCT---TTCTCTCTTGGTATTT- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539013 54 + 85787240 TGCTTTCACCCCCACCTGACTGTGGTCAGAGTGGGGCT---TTCTCTCTTGGTATTT- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14220886 57 - 49578535 TGCTTTCACCCACACCTGACCATGGTTGGAGCGGGGGGACTTTCTCTCTTGGTATTT- i calJac3.chr19 C 0 C 0 s mm10.chr1 178803380 47 + 195471971 TGTCTTCA-CCCTACTGG---GTGTTTTGTGTGGG------Ttctctctctctctct- i mm10.chr1 C 0 I 101 s canFam3.chr7 36369648 50 + 80974532 TGTCTCTGCCTCCACCCCACCAT-----CAAGGGGGCT---TTCTCTCTTGGTATTTT i canFam3.chr7 C 0 C 0 a score=259543.000000 s hg38.chr1_KI270759v1_alt 211306 74 + 425601 AATTAGTAAGTGTAGGCAAACATT-TGCATTGTGGCACTGG-GATAGGAAAAGAGTTGAACATGAATATAAAAATG s panTro4.chr1 224965916 72 + 228333871 AATTAGTAAGTGTAGGCAAACATT-CGCATTGTGGCACTGG-GATAGG--AAGAGTTGAACATGAATATAAAAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226327419 74 - 229942017 AATTAGTGAGTGTAGGCAAAAATT-TGCATTGTGGCACTGG-GATAGGAAAAGAGTTGAACATGAATATAAAAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140215232 74 - 143122389 AATTAGTAAGTGTAGGGAAAAATT-TGCATTGTGGCACTGG-GATAGGAAAAGAGTTGAACATGAATATAAAAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16927235 74 - 229590362 AATTAGTAAGTGTAGGCAAAACTT-TGCATTGTGGCACTGG-GATAGGAAAAGAGCTGAACATGAATATAAAAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223690465 74 - 227556264 AATTAGTAAGTGTGGGCAAAACTT-TGCATTGTGGCACTGG-GATAGGAAAAGAGCTGAACATGAATATAAAAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16740776 74 - 220367699 AATTAGTAAGTGTAGGCAAAACTT-TGCATTGTGGCACCGG-GATAGGAAAAGAGCTGAACATGAATATAAAAATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539067 74 + 85787240 AATTGGTAAGTGTAGGCAAAACTT-TGCATTGTGGCACTGG-GATAGGAAAAGAGCTGAACATGAATATAAAAATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14220943 74 - 49578535 AATTAGTAAGTATAGGCAAAAATT-TGCATTGTGGCACTGG-GATAGGAAAAGCATTGAATATGAATATAAAAATG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36369698 76 + 80974532 GATTACTAAGTGTAGGCAAAAATTGTGCTGTGTGGCACTTGCAATAGGAAAAGGATTGAATATGAATATGCAAATG i canFam3.chr7 C 0 C 0 e mm10.chr1 178803427 101 + 195471971 I a score=614096.000000 s hg38.chr1_KI270759v1_alt 211380 217 + 425601 GGGATGGggccgggtgtggtggctcacacctttaatcccagcc---------gccaaggcgggcagatcacttgaggtcaggagttcgagaccagcctggtcaacatggcgaaaaccctacctctactaaaatac--aaaaacattagccgggcgtggtgacacgtgc-------cccagctagaggcagggaggctgaggcaggagaatcacttgaacccagaaggcggaggtt s panTro4.chr1 224965988 217 + 228333871 GGGATGGggccgggtgtggtggctcacacctttaatcccagcc---------gccaaggcaggcagatcacttgaggtcaggagttcgagaccagcctggtcaacatggcgaaaaccctacctctactaaaatac--aaaaacattagccgggcgtggtgacacgtgc-------cccagctagaggcagggaggctgaggcaggagaatcacttgaacccagaaggcggaggtt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226327493 217 - 229942017 GGGATGGggccgggtgtggtggctcacacctttaatcccagcc---------gccaaggcgggcagatcacttgaggtcaggagttcgagaccagcctggtcaacatggcaaaaaccccacctctactaaaatac--aaaaacattagccgagtgtggtgacacgtgc-------cccagctagaggcagggaggctgaggcaggagaatttcttgaacccagaaggcggaggtt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140215306 212 - 143122389 GGGATGGggccgggtgtggtggctcacacctttaatcccagcc--------------ggtgggcagatcacttgaggtcaggagttcgagaccagcctggtcaacatggcgaaaaccccacctctactaaaatac--aaaaacattgcccaggcgtggtgacacgtgc-------cccagctagaggcagggaggctggggcaggagaattgcttgaacccaggaggtggaggtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16927309 217 - 229590362 GAGATGGggccaggtgtggtgactcacacctgtaatcccagcc---------gtcaaggtgggcagatcacttgaggtcaggagttcgagaccagcctggtcaagacggcgagaactccatctctactaaaatcc--gagcacattagccgggcgtggtgacacatgc-------cccagctagaggcagggaggctgaggcaggagaattgcttgaacccaggaggcggaggtt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223690539 217 - 227556264 GAGATGGggccaggtgtggtgactcacacctgtaatcccagcc---------gtcaaggtgggcagatcacttgaggtcaggagttcgagaccagcctggtcaagacggtgaaaactccatctctactaaaatcc--gagcacattagccgggcgtggtgacacatgc-------cccagctagaggcagggaggctgaggcaggagaattgcttgaacccaggaggcggaggtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16740850 217 - 220367699 Gagatggggccaggtgtggtgactcacacctgtaattccagcc---------gccaaggtgggcagatcacttgaggttaggagttcgagaccagcctggtcaagacggtgaaaactccatctctactaaaatac--gagcacattagccgggcatggtgacacatgc-------cccagctagaggcagggaggctgaggcaggagaattgcttgaacccaggaggcggaggtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539141 217 + 85787240 GAGATGGggccagatgtgatgtctcacacctgtaatcccagcc---------gccaaggcgggcagatcacttgaggtcaggagttcaagaccagcctggtcaagacggtgaaaactccatctctactgaaatac--aaacacattagccgggcatggtgacacatgc-------cccagctagaggcagggaggctgaggcaggagaatggcttgaacccaggaggcggaggtt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14221017 230 - 49578535 GAGATGAggtcgggtgcgg----tcacatctgtaatcccagcactttgggaggccaaggcaggcagatcatttgaggtcaggagttcgagagcagcatagccaacaagac-aaatccttgcccctactaaaatacagaaaaaaattaaccaggcatggtgacatgtgcctgtaatcccagctagaggcagggaggctgagacaggagaattgcttgaacccggatggcggaggtt i calJac3.chr19 C 0 C 0 e mm10.chr1 178803427 101 + 195471971 I e canFam3.chr7 36369774 0 + 80974532 C a score=123782.000000 s hg38.chr1_KI270759v1_alt 211597 48 + 425601 gcagtgagccaagattacagcactgcactctagcctgggtgagagagt s panTro4.chr1 224966205 48 + 228333871 gcagtgagccaagattacaccactgcactctagcctgggtgagagagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226327710 48 - 229942017 gcagtgagccaagattacaccactgcactctagcctgggtgaaagagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140215518 48 - 143122389 gcagtgagccaagattgcaccactgcactctagcccgggtgaaagagt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16927526 48 - 229590362 gcagtgagccaagattgcaccactgcactctagcctgggtgacaaagt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223690756 48 - 227556264 gcagtgagccaagattgcaccactgcactctagcctgggtgacaaagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16741067 48 - 220367699 gcagtgagccaagattgcaccactgcattctagcctgggtgacaaagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539358 48 + 85787240 gcagtgagccaagattgcaccactgcactctagcctggctgacaaagt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14221247 28 - 49578535 gcagtgagccaagattgcacctctgcac-------------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178803528 22 + 195471971 GTAGTAAGGAAAAATTG-------------TAGCC------------- i mm10.chr1 I 101 C 0 e canFam3.chr7 36369774 0 + 80974532 C a score=259496.000000 s hg38.chr1_KI270759v1_alt 211645 103 + 425601 gagactctgtctc----------------aaaaaaaaaaaaaaggaaaTGGGAGAAATAGTTTCCAGCATTTAGCTTTTGGCGACAATGACTAAATCAATACAAATGTTAATCTCTGTT s panTro4.chr1 224966253 112 + 228333871 gagactctgtctc-------aaaaaaaaaaaaaaaaaaaaaaaggaaaTGGGAGAAATAGTTTCCAGCATTTAGCTTTTGGTGACAATGACTAAATCAATACAAATGTTAATCTCTGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226327758 115 - 229942017 gagactctgtctc----aaaaaaaaaaaaaaaaaaaaaaaaaaGGAAATGGGAGAAATAGTTTCCAGCATTTAGCTTTTGGTGACAATGACTAAATCAATACAAATGTTAACCTCTGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140215566 97 - 143122389 gagactgagtctc----------------------aaaaaaaaggaaaTGGGAGAAATAGTTTCCAGCATTTAGCTTTTGGCAACAATGACTAAATCAATACAAATGTCAATCTCTGTT i nomLeu3.chr5 C 0 I 374 s rheMac3.chr1 16927574 102 - 229590362 gagactctgtctc-----------------aaaaaaaaaaaaaggaaaTGGGAGAAATAGTTTCCAGCATGTAGCTTTTGGCAACAATGACTAAATCAATACAAATTTTAATCTCCGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223690804 119 - 227556264 gagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGAAATGGGAGAAATAGTTTCCAGCATGTAGCTTTTGGCAACAATGACTAAATCAATACAAATTTTAATCTCCGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16741115 117 - 220367699 gagactgtgtctc--aaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaatgggagaAATAGTTTCCAGCATGTAGCTTTTGGCAACAATGACTAAATCAATACAAATTTTAATCTCTGTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539406 106 + 85787240 gagactctgtctc-------------aaaaaaaataaaaaaaaggaaaTGGGAGAAATCATTTCCAGCATGTAGCTTTTGGCAACAATGACTAAATCAATACAAATTTTAATCTCTGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14221275 45 - 49578535 -------------------------------------------------------------------------ACTTTTGGCCACAATGACTAAATCAA-AAAAATTTTAATCTCCGTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178803550 49 + 195471971 --AACTTTTTTTT-----------------------------------------------------------AGCTTTTGG---------CTAAATCTATAGAAATTTCCATTTCTGTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36369774 75 + 80974532 --------------------------------------------GAGACTGGAAAAATTGTTGCCAGCATTTAGCTTTCAGCAATAGCGACTGAATCCGGACAGATTTCGATCTCTGTT i canFam3.chr7 C 0 C 0 a score=921774.000000 s hg38.chr1_KI270759v1_alt 211748 309 + 425601 GCATTATGCTTTTGAAACTGTATTGGCAGTTTAGGAAAAATCCAGTCAACAGTT-----------TAATATGAAAATAGAGACCTGTAGACCAAATGGAGGGCAGGAAGCAGATATTTGCCACacaaacatttattgagcgcttgat-gtattataggtgctgtgtaaagttttggagattcagaaatgaatcaaagagaGGA-----------GTGAACATACAAATTATCCCAACTATAATAC---CGGTGATAAGC-C--------------ACAAGGTAGCT---CTGCTAGCA---------CGGAACATATGGAAGAGATGAATAA-TTCTGCTTCGG-----AGGGAAGGAGTCATATTAG s panTro4.chr1 224966365 309 + 228333871 GCATTATGCTTTTGAAACTCTATTGGCAGTTTAGGAAAAATCCAGTCAACAGTT-----------TAATATGAAAATAGAGACCTGCAGACCAAATGGAGGGCAGGAAGCAGATATTTGCCACacaaacatttattgagcgcttaat-gtattataggtgctgtgtatagttttggagattcaaaaatgaatcaaagagaGGA-----------GTGAACACACAAATTATCCCAACTATCATAC---CTGTGATAAGC-C--------------ACAAGGTAGCT---CTGCTAGCA---------CAGAACATATGGAAGAGATGAATAA-TTCTGCTTCGG-----AGAGAAGGAGTCATATTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226327873 312 - 229942017 GCATTATGCTTTTGAAACTTTATTGGGAGTTTAGGAAAAATCCAGTCAACAGTT-----------TAATATGAAAATAGAGACCTGCAGACCAAACGGAGGGCAGGAAGCAGATATTTGCCACacaaacatttactgagcgcttaat-gtattataggtgctgtgtaaagttttggagattcaaaaatgaatcaaagagaGGA--------GTGGTGAACACACAAATTATCCCAACTATAATAC---CTGTGATAAGC-C--------------ACAAGGTAGCT---CTGCTAGCA---------CAGAACATATGGAAGAGATGAATAA-TTCTGCTTCGG-----AGAGAAGAAGTCATATTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140216037 312 - 143122389 GCATTATGCTTTTGAAACTCTATTGGGAGTTTAGGAAAAATCCAGTCAACAGTT-----------TAATATGAAAATAGAGACCTGCAGACCAAATGGAGGGCAGGAAGCAGATATTTGCCATacaaacatgtattgagcacttgat-gttttataggtgctgtgtaaagttttggagactcaaaaatgaatcaaagagaGGA--------GCGGTGAACACACAAATTATCCCAACTATAATAC---CTGTGATAAGC-C--------------ACAAGGTAGCT---CTGCTAGCA---------CAGAACATATGGAAGAGATGAATAA-TTCTgcttcgg-----agagaaggagtcatattag i nomLeu3.chr5 I 374 C 0 s rheMac3.chr1 16927676 299 - 229590362 GCATTATGCTTTTGAAACTCTATCAGGAGTTTAGGGAAAATCCAGTCAACAGTT-----------TAATATGAAAATATCGACCTGCAG------------------AGCAGATATTTGCCACacaaacatttattgaacgcctaat-gtattataggtgctgtgtaaagttttg--gattcagaagtgcatc--agagagga--------gcggtGAATACACAGACTAACCCTACTGTAACGC---CTGTGATAAAC-C--------------ACAAGGCAGCT---CTGCTAGCACAATACTTTCAGAACATACGGAAGAGATGAATAA-TTCTGCTTCGG-----AGAGAAGGAGTCATATTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223690923 299 - 227556264 GCATTATGCTTTTGAAACTCTATCAGGAGTTTAGGGAAAATCCAGTCAACAGTT-----------TAATATGAAAATATCGACCTGCAG------------------AGCAGATATTTGCCACacaaacatttattgaacgcctaat-gtattataggtgctgtgtaaagttttg--gattcagaagtgaaTC--AGAGAGGA--------GCGGTGAATACACAGACTAACCCTACTGTAACGC---CTGTGATAAAC-C--------------ACAAGGCAGCT---CTGCTAGCACAATACTTTCAGAACATACGGAAGAGATGAATAA-TTCTGCTTCGG-----AGAGAAGGAGTCATATTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16741232 299 - 220367699 GCATTATGCTTTTGAAACTCTATCAGGAGTTTAGGAAAAATCCAGTCAACagtt-----------taatatgaaaatatcGACCTGCAG------------------AGCAGATATTTGCCACccaaacatttattgaacgcCTAAT-GTATTATAGGTGCTGTGTAAAGTTTTG--GATTCAGAAGTGAATC--AGAGAGGA--------GTGGTGAATACACAAACTAACCCTACTGTAACGC---CTGTGATAAAC-C--------------ACAAGGCAGCT---CTGCTAGCACAATACTTTCAGAACATATGGAAGAGATGAATAA-TTCTGCTTCGG-----AGGGAAGGAGTTATATTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539512 317 + 85787240 GCATTATGCTTTTGAAACTCTATCAGGAGTTTAGGAAAAATCCAGTCAACAGTT-----------TAATATGAAAATATCGACCTGCAGACCAAATGTGGGACAGGAAGCAGATATTTGCCACacaaacatttattgaacgcctaat-gtattataggtgctgtgtaaagttttg--gattcagaagtgaaTC--AGAGAGGA--------GTGGTGAATATACAAACTAACCCTACTGTAACGC---CTGTGATAAAC-C--------------ACAAGGCAGCT---CTGCTAGCACAATACTTTCAGAACATACGGAAGAGATGAATAA-TTCTGCTTCGG-----AGAGAAGGAGTCATATTAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14221320 318 - 49578535 GCATTATGCTTTTGAAAC--TATTGGGAGTTTAAGAAAA--TCAGTCAGTCGTC-----------TTACATAAAAATAGAGACCGACAGCCCAAATGTAGTACAGGAAGCAGATACTTGCTACAGaaacatttattgagcgcctaat-ggattgtaggtgctgTGTGAAGTTGTGGGGATTCAAAAGCGAGTC--AGAGAGGA--------CTGGTGA--ACACAAATTAACTCTGCTGTAATGC---CTGTGGTAAGC-C--------------ACGAGGCATCG---CCCCTAGCACAGTACTTTCAGAACATATGGAAGAAATGAATAC-TTCTGCTTTTGACTATAGAAAAGGAGTCATATTAG i calJac3.chr19 C 0 I 304 s mm10.chr1 178803599 313 + 195471971 GCATCAT--TACTAAAACTC--TCAGGATCTTAATATAGATCCAGTCAATCATT-----------TGATATTAAAATCTAGGCCTATGGATCAAATGCAAGCTGGGAAGCAGACCTCAG-TGTAAGGACACTAACTGGGCATCTAGTGGTACTTTAAGCATTTTGTAAGGGTCCTGGGATTGGAAAGTGAGCCCAGGAAAACA--------GTGACTGAGACAGGAGCTGACTCTGCCA---------CGGCAGTCAGC-CACCAAAAACTCCTTACAAGGGAGGTGTATTTCTAGCAGAACACTCTCAG-ACACACAGAAGTAGAGAATGA-ATTGTCTTTGA-----ATAGA-------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36369849 341 + 80974532 --GTTTTATATTTAAAACTGTATAGGGAGCTTAACCAAAA-----TCAACAGTTGCCTATATACCTGATTTTAAAATA--GGCCTGCAGATAAAAATTAGGGCGGGAAGCAGATATTTGGTATGTAAACATGCTTTGAGCATCTGGT-ATGTTACAGGTACTTTGTAAGATTTGGGGGATTCGAAAGTGAATCAAAGAGAGGAATGCCTAAGTGCTTAAGATACAAATAAATTCTACTCTAACACTTTTTTTGATAAGCTC--------------CCAAAGTAGCT---CTATTAGCAAAATCCTACCAGAAATTATGGAAGAAAAGAATAAGTTCTCCTTTGGGTGGTGAAGAAGGACATGCCTTAG i canFam3.chr7 C 0 C 0 a score=377298.000000 s hg38.chr1_KI270759v1_alt 212057 104 + 425601 AGTTGGGTCTAGAAGAATGA-GCAGG-AGGT----------GGCTG-----GGAAGGGAGGGCG-TTT-GGGCAGAGGAATTGGCATGATTCTCTGTGTATGCACAGGACCATGAAAGTGAAT s panTro4.chr1 224966674 104 + 228333871 AGTTGGGTCTAGAAGAATGA-GCAGG-AGGT----------GGCTG-----GGAAGGGAGGGCG-TTT-GGGCAGAGGAATTGGCATGATTCTCTGTGTATGCACAGGACCATGAAAGTGAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226328185 104 - 229942017 AGTTGGGTCTAGAAGAGTGA-GCAGG-AGGT----------GGCTG-----GGAAGGGAGGGCA-TTT-GGGCAGAGGAACTGGCGTGATTCTCTGTGTATGCACAGGACCATGAAAGTGAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140216349 104 - 143122389 agttgagtctagaagaatga-gcagg-aggt----------ggctg-----ggaaaggagggca-ttt-gggcagaggaattggcatgattctctgtgtatgcacaggaccatgaaagtgaac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16927975 104 - 229590362 AGTTGGGTCTAGAAGAATGA-GCAGG-AGGT----------AGCTG-----GGAAGGGAGGGCA-TTT-GGACAGAGGAATTGGCATGATTCTCTTTGTATGAACAGGACCATGAAAGTGAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223691222 104 - 227556264 AGTTGGGTCTAGAAGAATGA-GCAGG-AGGT----------AGCTG-----GGAAGGGAGGGCA-TTT-GGACAGAGGAATTGGCATGATTCTCTTTGTATGAACAGGACCATGAAAGTGAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16741531 104 - 220367699 AGTTGGGTCTAGAAGAATGA-GCAGG-AGGT----------GGCTG-----GGAAGGGAGGGCA-TTT-GGACAGAGGAATTGGCATGATTCTCTTTGTATGAACAGGACCATGAAAGTGAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539829 104 + 85787240 AGTTGGGTCTAGAAGAATGA-GCAGG-AGGT----------GGCTG-----GGAAGGGAGGGCA-TTT-GGACAGAGGAATTGGCATGATTCTCTGTATATGAACAGGACCACGAAAGTGAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14221942 115 - 49578535 agttgggtctagaaaaatga-gcagg-agttgaggctagaggaatg-----agaagggaggacatttt-gggcagaggaaTTGTCCTGATTCTTTGCTTATGTACAGGACCATGAAAGTGAAT i calJac3.chr19 I 304 C 0 s mm10.chr1 178803912 101 + 195471971 ----GAGTCTAGAATAATGAGGCAGG-GAGG----------AATCT-----GGGAAGGAATGCC-TTT-CTCAAGTGAAATTACCATGAGTTTCTGTTTACCCACACTGGCCTGAGAGTGTCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36370190 111 + 80974532 AAGTGGGTTTCAAGGGATGA-GTAGGCAGGT----------GGCTGGAACAGGAGGGGAGGGCA-TTTCAGACAGAGCAGTTGGCATGACTCTCTGTTTATGCACAGAAGCATGAAAGCGCAT i canFam3.chr7 C 0 I 1 a score=10900.000000 s hg38.chr1_KI270759v1_alt 212161 14 + 425601 GGTGTCATGTAA-----tt-- s panTro4.chr1 224966778 19 + 228333871 GGTGTCACGTAAttttttt-- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226328289 12 - 229942017 GGTGTCATGTAA--------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140216453 12 - 143122389 ggtgtcatgtAA--------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16928079 10 - 229590362 GGTGT--TGTAA--------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223691326 10 - 227556264 GGTGT--TGTAA--------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16741635 10 - 220367699 ggtgt--tgtaa--------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539933 10 + 85787240 GGTGT--TGTAA--------- i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36370302 14 + 80974532 GGTGTATTGGAA-------TT i canFam3.chr7 I 1 I 470 e mm10.chr1 178804013 0 + 195471971 C e calJac3.chr19 14222057 0 - 49578535 C a score=715223.000000 s hg38.chr1_KI270759v1_alt 212175 298 + 425601 tttttttttttttttttttgagaatgagtctcactctatcgcgcaggccggagtgcagtggcacgatctcggctcactgcaacctccacctcctgggttcaagcaatcctctgcctcagtctcccaagtagctgggattacagacgcctgccacaacaatcggctaatttttgtatttttagtagagacgagggttcaccatcttggccaggctggtcttgaactcctgaccttgtgatccacctgcctcagcctcccaaaatgctgagattacaggcgtgagccaccgcacccagcA s panTro4.chr1 224966797 298 + 228333871 tttttttttttttttttttgagaatgagtctcactctattgtgcaggccggagtgcagtggcacgatctcggctcactgcaacctccgcctcctgggttcaagcagtcctctgcctcagtctcccaagtagctgggattacagacacctgccacaacaatcggctaatttttgtatttttagtagagacgaggtttcaccatcttggccaggctggtcttgaactcctgaccttgtgatccacctgcctcagcctcccaaaatgctgagattacaggcgtgagccaccgcacccagcA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226328301 294 - 229942017 ---ttttttttttttttttgagaatgagtctcactctatcgcccaggccggagtgcagcggcacgatctcggctcactgcaacctctgcctcctgggttcaagcaatcctctgcctcagtctcccaagtagctgggattacagacgcccgccacaacaaccggctaatttttgtatttttagtagagacgaggtttcaccatcttggccaggctggtcttgaactcctgaccttgtgatccacctgcctcagcctcccgaagtgctgggattacaggcgtga-ccaccgcgcccagcA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140216465 294 - 143122389 ----tttttttttttttttgagaatgagtctcgctctatcgcccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcctgggttcaagcaattctctgcctcagtctcccaagtagctgggattacagacgcccaccacaacaaccggctaatttttgtatttttagtagggactaggtttcaccatcttggccaggctggtcttgaactcctgaccttgtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcacccagcA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16928089 296 - 229590362 --tttttttttttttctttgagaatgagtctcactctatcgcccaggctggagtgcagtggagcaatctcggctcactgcaacctccgcctcccgggtttaagtagtcctctgcctcagcctcccaagtagctgggattacaggcgcccaccacaacaaccggctaatttttgtatttttagtcgagacgaggtttcaccatcttggccaggttggtcttgaactcctgaccttgtgatccgcctgcctcagtctcccaaagtgctgggattacaggcgtgagccactgcacccagcA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223691336 296 - 227556264 --tttttttttttttctttgagaatgagtctcactctatcgcccaggctggagtgcagtggagcaatctcggctcactgcaacctccgcctcccgggttcaagcagtcctctgcctcagcctcccaagtagctgggattacagacgcccaccacaacaaccggctaatttttgtatttttagtcgagacgaggtttcaccatcttggccaggttggtcttgaactcctgaccttgtgatccgcctgcctcagtctcccaaagtgctgggattacaggcgtgagccactgcacccagcA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16741645 295 - 220367699 --tttttttttttttctttgagaatgagtctcactctgtcgcccaggctggagtgcagtggagcaatctcggctcactgcaacctccgcctcccgggttcaagcagtcctctgcctcagcctcccaagtagctgggattacagacgcccgccacaacaaccggctaatttttgtatttttagtcgagacgaggtttcaccatcttggccaggctggtcttgaactcctgaccttgtgatctgcctgcctcagtctcccaaagtgctgggattacaggcgtgagccactgc-cccagca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82539943 294 + 85787240 ----tttttttttttcttcgagaatgagtctcactttatcgcccaggctggagtgcagtggagcaatctcggctcactgcaacctccgcctcccgggttcaagcagtcctctgcctcagcctcccaagtagctgggattacagacgcccgccacaacaaccggctaatttttgtatttttagtcgagatgaggtttcaccatcttggccaggctggtcttgaactcctgaccttgtgatccgcctgcctcagtctcccaaagtgctgggattacaggcgtgagctactgcacctggcA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178804013 0 + 195471971 C e canFam3.chr7 36370316 470 + 80974532 I e calJac3.chr19 14222057 0 - 49578535 C a score=125825.000000 s hg38.chr1_KI270759v1_alt 212473 36 + 425601 GGTGTCATGTAATTTTATTCATATTTCCTGATGACT s panTro4.chr1 224967095 36 + 228333871 GGTGTCATGTAATTTTATTCATATTTCATGATGACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226328595 36 - 229942017 GGTGTCATATAATTTTATTAATATTTCATGATAACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140216759 36 - 143122389 GGTGTCATGTAATTTTATTCATATTTCATGATGACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16928385 36 - 229590362 GGTGTCATGTAATTTTATTCATATTTCATGATGACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223691632 36 - 227556264 GGTGTCATGTAATTTTATTCATATTTCATGATGACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16741940 36 - 220367699 gGTGTCAtgtaattttattcatatttcatgATGACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82540237 36 + 85787240 GGTGTCATGTAATTTTATTCATCTTTCATGATGACT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14222057 36 - 49578535 GGTGTCATGTGATTTTATTCATATTTCATGATGACT i calJac3.chr19 C 0 C 0 s mm10.chr1 178804013 36 + 195471971 GGCACTGTATGACCTTAGGCATATCTCGTGATGATT i mm10.chr1 C 0 C 0 e canFam3.chr7 36370316 470 + 80974532 I a score=292845.000000 s hg38.chr1_KI270759v1_alt 212509 89 + 425601 AAGACAACGTATTTTTCAGA------TTCTCAAAACAGGCAATGATTAGTAA---------------------------------------------------TAGATCACCTTAAATAGGATGTTATAATGGTGATGAAGACCAA s panTro4.chr1 224967131 89 + 228333871 AAGACAACGTATTTTTCAGA------TTCTCAAAACAGGCAATGATTAGTAA---------------------------------------------------TAGATCACCTTAAATAGGATGTTATAATGGTGATGAAGACCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226328631 89 - 229942017 AAGACAACATAGTTTCCAGA------TTCTCAGAGCGGGCGATGATTAGTAA---------------------------------------------------TAGATCCCCTTAAGTAGGATGTTACAATGGTGATGAAGACCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140216795 89 - 143122389 AAGACAACATATTTTTCAGA------TTCTCAAAACAGGCGATGATTAGTAA---------------------------------------------------TAGATCACCTGAAATAGGAGGTTATAATGGTGATGAAGACCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16928421 89 - 229590362 AAGACAACATGTTTTTCAGA------TTCTCAAAACAGGCGATGATTAGTAA---------------------------------------------------TAGATCACCCTAAATAGGATGTTATAATGATGATGAAGACTGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223691668 89 - 227556264 AAGACAACATATTTTTCAGA------TTCTCAAAACAGGCGATGATTAGTAA---------------------------------------------------TAGATCACCCTAAATAGGATGTTATAATGATGATGAAGACTGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16741976 89 - 220367699 AAGACAACATATTTTTCAGA------TTCTCAAAACAGGCGATGATTAGTAA---------------------------------------------------TAGATCACCCTAAATAGGATGTTATAATGATGATGAAGACCGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82540273 89 + 85787240 AAGACAACATATTTTTCAGA------TTCTCAAAACAGGCGATGATTAGTAA---------------------------------------------------TAGATCACCCTAAATAGGATGTTATAATGATGATGAAGACCGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14222093 88 - 49578535 AAGACAAAATGTTTGTCAGA------TTCTCAAAATAGGCGATGATTAGTAA---------------------------------------------------TAGATCACCTTAAGTAGAATGTTACAATG-TGACGGACAACTG i calJac3.chr19 C 0 I 30 s mm10.chr1 178804049 89 + 195471971 AGAACTAAATATTGTGCAGA------TTCTCAGGTTAGGCAGTGTTTAGTGA---------------------------------------------------CAGATCACATTAAACAGAGCATCATAATAATGGCAAAGAGCAA i mm10.chr1 C 0 I 382 s canFam3.chr7 36370786 146 + 80974532 aagaaaatacatttacagggctgtatttatcgaaaaaaaaattaacttgtaagtggacctgtgcagtttcagctggtgttcaagggcccactgCATTTTCCAGTAAATCACATTAGATAGGATGGTATAGTGAGGAAGATGAATAA i canFam3.chr7 I 470 I 38 a score=150521.000000 s hg38.chr1_KI270759v1_alt 212598 40 + 425601 TCACAGCTGCCTGGAAACAGTAGATCATGGGTCAATAATG s panTro4.chr1 224967220 40 + 228333871 TCACAGCTGACTGGAAACAGTAGATCATGGGTCAATAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226328720 40 - 229942017 TCACAGCTGACTGCAAACAGGAGACCATGGGCCAATAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140216884 40 - 143122389 TCACAGCTGACTGGAAACAGTAGCTCATGGGTCAATAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16928510 40 - 229590362 TCACAGCTGGTTGGAAACAGTGGCTCGTGGGTCAATAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223691757 40 - 227556264 TCACAGCTGGTTGGAAACAGTGGCTCGTGGGTCAATAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16742065 40 - 220367699 TCACAGCTGGTTGGAAACAGTGGCTCGTGGGTCAATAATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82540362 40 + 85787240 TCACAGCTGGTTGGAAACAGTGGCTCGTGGGTCAATAATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14222211 40 - 49578535 TCACAGCTGATTGGAAACAGTAGATCTTGGGCCAATAGTG i calJac3.chr19 I 30 C 0 s mm10.chr1 178804520 40 + 195471971 TTACAGCTGATTGGAAACAGTAGATCGTGAGTCCATAAAG i mm10.chr1 I 382 I 112 s canFam3.chr7 36370970 40 + 80974532 TCCTTGCTGATAGAAAACAGTGGATCATTGATCAAGTACA i canFam3.chr7 I 38 C 0 a score=167190.000000 s hg38.chr1_KI270759v1_alt 212638 77 + 425601 ---------------------GGCCCACACCTG-GGTTTTG-----------------TTAC------------TGAGTCAACCTACGCTACTTGTTCATG--TTGTACC-TATT----TATCTTGAGCTGGTAT s panTro4.chr1 224967260 74 + 228333871 ---------------------AGCCCACACCTG-GGTTTAG-----------------TTAC------------TGAGTCAACCTACGCTACTTGTTAA-----TGTATC-TATT----TATCTTGAGCTGGTAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226328760 79 - 229942017 ---------------------GACCCACACCTG-GATTTTG-----------------TTAC------------TGAGTCAACCTAGGCTACTTGTTAATGTATTGTATC-TATT----TATCTTGAGCTGGTAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140216924 74 - 143122389 ---------------------GACCCACACCTG-GGTTTTG-----------------TTAC------------TGAGTCAACCTAGGCTACTTGTTAA-----TGTATC-TATT----TATCTTGAGCTGGTAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16928550 75 - 229590362 ---------------------GACCCACACCTG-GGTTTTG-----------------TGAC------------TGGGTCAACCTAGGCTACTTGTTAA-----TGTATTGTATC----TATCTTAAGATGGTAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223691797 75 - 227556264 ---------------------GACCCACACCTG-GGTTTTG-----------------TGAC------------TGGGTCAACCTAGGCTACTTGTTAA-----TGTATTGTATC----TATCTTAAGATGGTAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16742105 75 - 220367699 ---------------------GACCCACACCTG-GGTTTTG-----------------TGAC------------TGGGTCAACCTAGGCTACTTGTTAA-----TGTATTGTATG----TATCTTAAGATGGTAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82540402 75 + 85787240 ---------------------GATCCACACCTG-GGTTTTG-----------------TGAC------------TGGGTCAACCTAGGCTACTTGTTAA-----TGTATTGTATC----TATCTTAAGATGGTAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14222251 96 - 49578535 ---------------------GACCCACACCTG-GGTTTCGAACCTTGGTTTTGTGACTGAC------------TGGGTCAACCTAAGCTGCTTGCGAA-----TGTATCATATCCATGTATCTTAAGATGATAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36371010 92 + 80974532 GTGAGAGAACCTAAAACCCAGTGCTCAGAACTGTGGTTCTG-----------------TGACAGATTGGGTGGGTGGTCTGTCTTAGACTACTTGTCTA-----CTCATGACTT--------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178804560 112 + 195471971 I a score=1754276.000000 s hg38.chr1_KI270759v1_alt 212715 528 + 425601 TAGTATATCCATTTCTAAAAATCCTTGCTTGAGAA-------------GGAAAAACTATTCAGGAGAAAGAAGAGGAGATAAAGTCTAAACAACTTGATTTCACTTGAAAAGTCCT-AAGTCGT-CCCTTGGAAACTATCTATAGTAAAAAGCATGGGATTTTATACCGTGTTTTAGGCAACTGAAAGGCTTTTTTACAA-------TTGTAGTAA-ACACTGACTGCCAGCATTCTGGT-ACCAGTTA-CTTTATTAAGGTAAATTCCCAAAACTCACAATAGTGGGAAAAAATACTGATAAGCCTTCTAAAACACCAAAGAAGTGTAGAACAACATCTTGGATGCTT-TTAGTCACGAGTCAGAACGCCGCGGTGGttacagagcaatagcatttcagagctgggagagacctt-agagatcatgtattttgtggattttcaaatctttgaagaatgatgttctgggtaaggaagct--gctaagagtccatgagc-tagttagtgaggactgctaca--ctcttacacactcactcccggatccctttgtgcatg-at s panTro4.chr1 224967334 528 + 228333871 TAGTATATCCATTTCTAAAAATCCTTGCTTGACAA-------------GGAAAAACTATTCAGGAGAAAGAAGAGGAGATAAAGTCTAAACAACTTGATTTCACTTGAAAAGTCCT-AAGTCGT-CACTGGGAAACTATCTATAGTAAAAAGCACGGGATTTTATACCGTGTTTTAGGCAACTGAAAGGCTTTTTTACAA-------TTGTAGTAA-ACACTGACTGCCAGCATTCTAGT-ACCAGTTA-CTTTATTAAGGTAAATTCCCAAAACTCACAATAGTGGGAAAAAATACTGATGAGACTTCTAAAACACCAAAGAAGTGTAGAACAACATCTTGGATGCTT-TTAGTCACGAGTCAGAACGCCGCGGTGGttacagagcaatagcatttcagagctgggagagacctt-agagatcatgtaTTTTGTGGATTTTCAAATCTTTGAAGAATGATGTTCTGGGTAAGGAAGCT--GCTAAGAGTCCATGAGC-TAGTTAGTGAGGACTGCTAGA--CTCTTACACACTCACTCCCGGACCCCTTTGTGCATG-AT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226328839 528 - 229942017 TAGTATATCCATTTCTAAAAATCCTTGCTTGAGAA-------------GGAAAAACTATTCAGGAGAAAGAAGAGGAGATAAAGTCTAAACAACTCGATTTCACTTGAAAAGTCCT-AAGTCAT-CACTGGGAAACTACCTGTAGTAAAAAGCACGGGATTTTATACCATGTTTTAGGCAATTCAAAGGCTTTTTTACAA-------TTGTTGTAA-ACACTGACTGCCAGCATTCTGGT-ACCAGTTA-CTTTATTAAGGCAAATTCCCAAAACTCACAATAGTGGGAAAAAATACTGATGAGCCTTCTAAAACACCGAAGAAGTGTAGAACAACATTTAGGATGCTT-TTAGTCATGAGTCAGAATGCCGCGGGGGttacagagcaatagcatttcagagctgggagagacctc-agagatcatgtaTTTTGTGGATTTTCAAATCTTTGAAGAATGATGTTCTGGGTAAGGAAGCT--GCTAAGAGTCCATGAGC-TAGTTAGTGAGGACTGCTACA--CTCTTACACACTGACTCCCGGACCCCTTTGTGCACG-AT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140216998 524 - 143122389 TAGTATATCCATTTCTAAACATCCTTGCTTGAGAA-------------GGAAAAACTATTCAGGAGAAAGAAGAGGAGGTAAAGTCTAAACAACTTGATTTCACTTGAAAAGTCCT-AAGTTGT-CACTGGGAAATTA----TAGTAAAAAGCACGGAATTTTATACCGTGTTTTAGGCAATTCAAAGGCTTTTTTACAA-------TTGTAGTAA-ACACTGACTGCCAGCATTCTGGT-ACCAGTTA-CTTTATTAAGGTAAATTCCCAAAACTCACAATAGTGGGACAAAATACCGATGAGCCTTCTAAAACACCAAAGAAGTGTAGGACAACATTTTGGATGCTT-TTAGTCATGAGTCAGAACGCCGCGGTGGttacagagcaatagcatttcagagctgggagaggcctt-agagatcatgtaTTTTGTGTTTTTTCAAATCTTTGAAGAATGATGTTCTGGGTAAGGAAGCT--GCTAAGAGTTCATGAGC-TAGTTAGTGAGGACTGCCACA--CTCTTACACACTCACTCCCGGACCCCTTTGTACATG-AT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16928625 529 - 229590362 TAGTATATCCGTTTCTAAAAATCCTTGCTTGAGAA-------------GGAAAAACTATTCTGGAGAAAGAAGAGGAGATAAAGTCTAAACAACCTGATTTCACTTGAAAAGTCCT-AAGTCAC-TACTGGGAAACTATCTATAGTAAAAAGCACAGGATTTTATAGCATGTTTTAGGCAATTCAAAGGCTTTTTTACAGT------TTGTAGTAA-ACATTGACTGCCAGCATTCTGGT-ACCAGTTA-CTTTATTAAGGTACATTCCCAAAACTCACAATAGTGGGAAAAAATACTGATGAGCCTTCTAAAACACCGGAGAAGTGTGGAACAACATTTTGGATGCTT-TTAGTCATGAATCAGAACGCCACGGTGGttacagagcataagcatttcagagctgggagagacctt-agagatcacgtagtttgtggattttcaaatccttgaagaatgatgttctgggtaaggaagct--gctaagagtccatgagc-tagttagtgaggactgCCACA--TTCTTACACACTCACTCCCAGATCCATTTGTGCATG-AT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223691872 528 - 227556264 TAGTATATCCGTTTCTAAAAATCCTTGCTTGAGAA-------------GGAAAAACTATTCTGGAGAAAGAAGAGGAGATAAAGTCTAAACAACCTGATTTCACTTGAAAAGTCCT-AAGTCAC-TACTGGGAAACTATCTATAGTAAAAAGCACAGGATTTTATAGCATGTTTTAGGCAATTCAAAGGCTTTTTTACAG-------TTGTAGTAA-ACATTGACTGCCAGCATTCTGGT-ACCAGTTA-CTTTATTAAGGTACATTCCCAAAACTCACAATAGTGGGAAAAAATACTGATGAGCCTTCTAAAACACCGGAGAAGTGTGGAACAACATTTTGGATGCTT-TTAGTCATGAATCAGAACGCCACGGTGGTTACAGAGCATAagcatttcagagctgggagagacctt-agagatcacgtagtTTGTGGATTTTCAAATCCTTGAAGAATGATGTTCTGGGTAAGGAAGCT--GCTAAGAGTCCATGAGC-TAGTTAGAGAGGACTGCCACA--TTCTTACACACTCACTCCCAGATCCATTTGTGCATG-AT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16742180 528 - 220367699 TAGTATATCCGTTTCTAAAAATCCTTGCTTGAGAA-------------GGAAAAACTAttctggagaaagaagaggagataaAGTCTAAACAACCTGATTTCACTTGAAAAGTCCT-AAGTCAC-TACTGGGAAACTATCTATAGTAAAAAGCACAGGATTTTATAGCATGTTTTAGGCAATTCAAAGGCTTTTTTACAG-------TTGTAGTAA-ACATTGACTGCCAGCATTCTGAT-ACCAGTTA-CTTTATTAAGGTACATTCCCAAAACTCACAATAGTGGGAAAAAATACTGATGAGCCTTCTAAAACACCGGAGAAGTGTGGAACAACATTTTGGATGCTT-TTAGTCATGAATCAGAACGCCACGGTGGTTACAGAGCATAAGCATTTCAGAGCTGGGAGAGACCTT-AGAGATCACATAGTTTGTGGATTTTCAAATCTTTGAAGAATGATGTTCTGGGTAAGGAAGCT--GCTAAGAGTCCATGAGC-TAGTTAGTGAGGACTGCCACA--CTCTTACACACTCACTCCCCGATCCATTTGTGCACG-AT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82540477 528 + 85787240 TAGTATATCCATTTCTAAAAATCCTTGCTTGAGAA-------------GGAAAAACTATTCTGGAGAAAGAAGAGGAGATAAAGTCTAAACAACCTGATTTCACTTGAAAAGTCCT-AAGTCAC-CACTGGGAAACTATCTATAGTAAAAAGCACAGGATTTTATAGCATGTTTTAGGCAATTCAAAGGCTTTTTTACAG-------TTGTAGTAA-ACATTGACTGCCAGCATTCTTGT-ACCAGTTA-CTTTATTAAGGTACGTTCCCAAAACTCACAATAGTGGGAAAAAATACTGATGAGCCTTCTAAAACACCGGAGAAGTGTGGAACAACATTTTGGATGCTT-TTAGTCATGAATCAGAACGCCATGGTGGTTACAGAGCATAagcatttcagagctgggagggacctt-agagatcgtgtagtTTGCGGATTTTCAAATCTTTGAAGAATGATGTTCTGGGTAAGGAAGCT--GCTAAGAGTCCATGAGC-TAGTTAGTGAGGACTGCCACA--CTCTTACACACTCACTCCCGGATCCATTTGTGCACG-AT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14222347 494 - 49578535 TAGTCTATCCATTTCTAAAAATCCTTGCTTGAGAA-------------GGAAAAACTATTCAGGAGAGAGAACAGGAGACTAGGTCTAAACAACTAGATTTCACTTGAAAAGTCCT-AAATCGT-CACTGGGAAACTATCTGTAATAAAAGACTCAGGATTTTATAGCGCTTTATAGGCAA-TCAGAGGC-TTTTTACAA-------TTGTAATAA-ACCCTGACTGCCGGCATTCTGGT-ACCAGTGA-TTTTATTAAGGTACATTCCCAAAACTCACAATAGTGGGGGAAAATACTGACGAGCCTTCTAAAACACTGGAGAAGTGTGAAACAACATTTTGCATGCTT-TTAGTAGTGAGTCAAAACATCACGGTGGTTACAGAGCAGTCGCatttcagagctgggagagtcctc-agagatcatGGATTTGATG-----TTTAATCTTTGAAGAATGGTGTG---------------------------CGTGAGT-GAGTTAGTGAGGACTGCCACA----CTTACACACTCACTCCTGGATCCATTTCTGCACG-AT i calJac3.chr19 C 0 C 0 s mm10.chr1 178804672 449 + 195471971 TAGGATAGCCATTTCTAAAAATCCTTTCTTCGGAAAAGGGGGATGGAGGAGAAAGCTGTGTATGAGAGAGAACAGGAAAATGAGTGTAGTTGACCTGGGTTCACTGGAAAAGGCCTGAAGTTGTATCCAGGGAAACTGTAGAT-----AAAGCCCAGGACTGCACAGCACTCTGTGGATCATCC---TGTCTTCTCATGG-------TTGTTGTCA-GCAT---------GCTCTCTG---------CA-CTTGA---------------AAAACCCACAATAGGGGGGAGAGATCCTAATGAGCCTTCTAAAGCACCTC--AAGTGTGGGATAATGATTTGGATACTT-CTCATAGCAAG-CTGAGCATCACAGTGGCTGCAGAGGAGTATCGTCTTAACCCTAAGAGTGTCCTT-ACAGCTCACGTGT----------------TCTCTAAAGAGCAGGATTCTAGGGAACTAA------------------------AGTAAAAGAG------CACA--CTCCTAAAC----ATTCTTGGATCTCTT----CATG-AT i mm10.chr1 I 112 I 436 s canFam3.chr7 36371102 527 + 80974532 CTGTATTTCCATTTGTGAACATCATGGTGGAAAGA-------------GGAAAAAGCAGTTTGG-GAGTAAAGAGGAGACTGAGTCCAAACAACTTGATTTCCCTTGAAAAGTCAG-AAGT----CACTGGGAAACTCTC--TAGTAAAAAGTGCAGGATCTTATAGTACCTTTCAGGTAATT-------TTTTTTTCAAGTATTTATTTTAGAAAGGTAATGCCCGCCAGCATTATGCTAACCCGTTACCTTTATTGAGATGTACACTCAAAATTCATGATATTGAG---AGATACTAATGAGCCTTCTAAAACATCAAAGAAGCATGGGAT-ATATTTTGGATGCTCATTAATAGTAAGCCAGGGCGTCACAGTGTTACAAAAGCAATAGCGTTTCCAAGCTGGAGGAGTCCTTGGGAGGTCATGTGTTTTCTG-ACTTTTAGATCCTTGAAGAGTGGTGTTCTGGGAGTAGAGACTGGGCTAA-AGTCCGGGAGCACAGCTGGTGACAACTAGCATGCTCTCTCATACAGTCATTCTTGGATCTGTTTGCACATTCAT i canFam3.chr7 C 0 C 0 a score=1049058.000000 s hg38.chr1_KI270759v1_alt 213243 314 + 425601 ttctgtcattcaaccagtgttcataaagcccttgtaacatggaggataaatatttgaataa-gatactggctttaccccgcagaagcttagag------------------ctttgaaaggaggtaagacatataggtaaataatacacataggaagttattttaaaa----atataat---------------------------------------------gagagtT--ATTAGAGTTCAGAAGATGGAAACTTATTTCCTAGTGAAATGGATGACTGTGTCCTGTAATAGAATATTTACTATATT-TAGTAACA--GATTTATACAGTCTCATTTGTTTTAGTTAAGAAG-TTTGAGTATCCAACAGAGAAAAAAGGTTAGGT s panTro4.chr1 224967862 314 + 228333871 TTCTGtcattcaaccaatgttcataaagcccttgtaacatggaggataaatatttgaataa-gatactggctttaccccgcggaagcttagag------------------ctttgaaaggaggtaagacatataggtaaataatacacataggaagttattttaaaa----atataat---------------------------------------------gagagtT--ATTAGAGTTCAGAAGATGGAAACTTATTTCCTAGTGAAATGGATGACTGTGTCCTGTAATAGAATATTTACTGTATT-TAGTAACA--GATTTATACAGTCTCATTTGTTTTAGTTAAGAAG-TTTGAGTATCCAACAGAGAAAAAAGGTTAGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226329367 314 - 229942017 TTCTGTCATTC-ACCAATGTTCATAAAGCCCTTGTAACGTAGAGGATAAATATTTGAATAA-GATACTGGCTTTACCCCGTGGAAGCTTAGAG------------------CTTTGAAAGGAGGTAAGACATATAGGTAAATAATATACATAGGAAGTTATTTTAAAA----ATATAAT---------------------------------------------GAGAGTT--ATTAGAGTTCAGAAGATGGAAACTTCTTTCCTAGTGAAATGGATGACTGTGTCCTGTAATAGAATATTTACTGTATT-TAGTAACA--GATTTATACAGTCTCATTTGTTTTAGTTAAGAAGCTTTGAGTATCCGACAGAGAAAAAAGATTAGGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140217522 311 - 143122389 TTCTGTCATTC----AATGTTCATAAAGCCCTTGTAACGTGGAGGATAAATATTTGAATCA-GATACTGGCCTTACCCCGCGGAAGCTTAGAG------------------CTTTGAAAGGAGGTAAGACATATAGGTAAAGAATATAAATAGGAAGTTATTTTAAAA----ATATAAT---------------------------------------------GAGAGCT--ATTAGAGTTCAGAAAATGGAAACTTACTTCCCAGTGAAATGGATGACTGTGTCCTGTAATAGAATATTTACTGTATT-TAGTAACA--GATTTATACAGTCTCATTTGTTTTAGTTAAGAAGCTTTGGGTATCCAAAAGAGAAAAAAGATTAGGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16929154 313 - 229590362 TTCTGtcattcaaccaatgttcacaaagcccttgtaacatggaggataaatatttgaataa-gatactggccttaccccgtggaagcttagag------------------ctttgaaaagaggtaagacctataggtaaagaatataaataggaagttatttttaaa----atataat-----------------------------------------------gagTT--ATTAGAGTTCAGAAGATGGAAACTTATTTCCAAGTGAAATTGATGACTGTGTCCTGTAATAGAATATCTACTGTATT-TAGTAACA--GATTTATACAATCTTATTTGTTTTAGTTAAGAAGCTTTGAGTATCCAACAGAGAATAAAGATTAGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223692400 313 - 227556264 TTCTGTCATTCAACCAATGTTCACAAAGCCCTTGTAACATGGAGGATAAATACTTGAATAA-GATACTGGCCTTACCCCGTGGAAGCTTAGAG------------------CTTTGAAAAGAGGTAAGACCTATAGGTAAAGAATATAAATAGGAAGTTATTTTAAAA----ATATAAT-----------------------------------------------GAGTT--ATTAGAATTCAGAAGATGGAAACTTATTTCCAAGTGAAATTGATGACTGTGTCCTGTAATAGAATATCTACTGTATT-TAGTAACA--GATTTATACAATCTCATTTGTTTTAGTTAAGAAGCTTTGAGTATCCAACAGAGAAAAAAGATTAGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16742708 313 - 220367699 TTCTGTCATTCAACCAATGTTCGCAAAGCCCTTGTAACATGGaggataaatatttgaataa-gatACTGGCCTTACCCCGCGGAAGCTTAGAG------------------CTTTGAAAGGAGGTAAGACCTATAGGTAAAGAATATAAAtaggaagttattttaaaa----atataat-----------------------------------------------gagtt--ATTAGAGTTCAGAAGATGGAAACTTATTTCCAAGTGAAATTGATGACTGTGTCCTATAATAGAATATCTACTGTGTT-TAGTAACA--GATTTATACAATCTCATTTGTTTTAGTTAAGAAGCTTTGAGTATCcaacagagaaaaaagattaGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82541005 315 + 85787240 TTCTGTCATTCACCCATTGCTCGCAAAGCCCTTGTAACATGGAGGATGAATATTTGAATAA-GATACTGGCCTTACCCCGCGGAAGCTTAGAG------------------CTTTGAAAGGAGGTAAGACCTATAGGTAAAGAATATAAATAGGAAGTTATTTTAAAA----ATATAAT-----------------------------------------------GAGTTTAATTAGAGTTCAGAAGATAGAAACTTATTTCCAAGTGAAATTGATGCCTGTGTCCTGTAATAGAATATCTACTGTGTT-TAGTAACA--GATTTATACACTCTCATTTGTTTTAGTTAAAAAGCTTTGAGTATCCAACAGAGAAAAAAGATTAGGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14222841 314 - 49578535 CTCTGTCATTCAGCCAGTGCTCACAAAGCCCTTGCATCACGGAGGATAAATACTTGAATAA-GATGCTGGCCTTACCCCACAGAAGCTTAGAA------------------CTTTGAAAAAAGGTAAGACATATATGTAAAGACTATAAATAGGAAGTTATTTTTAAA----ATATAAT-----------------------------------------GAAGGAGAATT--ATTAGAGTTCAGAAGATGGAAACTTATTTCCAAGTGAACTTGATGACTATGTCCTATAATAGAATATGTACTGTATT-TATTAACA--GATTTATGGTATCTCATTTGTTTTAGTTAAGAAGCTTTGAGTATCCAACAGAGAAAAAAAGT----- i calJac3.chr19 C 0 C 0 s mm10.chr1 178805557 376 + 195471971 TTCTTTCATTCAGA-AAGGGCCATAAAGCCCTTGGCACCCATAGGATAAATACTTGGGCAGCCATATTGGCTTTCCTTTCCAGGAGCTTAAAGGATGTGTGTATAAATGATATTTGTGATGA-ACAAGAAAAGGAAGCTTAAAAGAGCAACAGGAAGTTGCCTAACAAAGTGATATgagagagagagagagagagagagagagagagagagagagagagagagagagagGT--TTTAACTTACAAACTATAGAAACTTATTTCCAAGTGAAGTTGGCAATGGTGGCTTGTGCTGGAGAGCTTTCTGGATTATTGTAGAA--CATCTATCTATACTGGTTTTATT---TTTAGAAGTTTTAAGCATCTAGTAGAGTAGAAAA---TGGT i mm10.chr1 I 436 C 0 s canFam3.chr7 36371629 300 + 80974532 GTTTTCTattcaacaaatgtttatgaggcccttgcaacatgtaggataaatatttgcatga-gatactgacagtgcccttcaggagctgccag------------------ttttgtaaggaggtaagacatgtaTGTGAATAATGTAGACGGCA--TTATTTTTAAA----ATACTAT---------------------------------------------GAAAGGT-----------CAGAA-ATGGAAAATTGTTTCCAAGTAAAATGGAAGAGTGGCCCCTAGAATAGAGAATTTGCTCTGCT-----AACAAGGACTTCCACAGTCACATTT-TTTAATTTAAGATGTTTTGAGCATCTAACCGGAGAAAAAAGTTAAGT i canFam3.chr7 C 0 I 1 a score=23481.000000 s hg38.chr1_KI270759v1_alt 213557 6 + 425601 AAAAAT s panTro4.chr1 224968176 6 + 228333871 AAAAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226329681 6 - 229942017 AAAAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140217833 6 - 143122389 AAAAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16929467 6 - 229590362 AAAAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223692713 6 - 227556264 AAAAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16743021 6 - 220367699 AAAAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82541320 6 + 85787240 AAAAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14223155 5 - 49578535 -AAAAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178805933 6 + 195471971 AAAAAT i mm10.chr1 C 0 I 1 e canFam3.chr7 36371929 1 + 80974532 I a score=856237.000000 s hg38.chr1_KI270759v1_alt 213563 298 + 425601 TAAGTACAGTGAggccaggcacagtg-gctcacacctgtaatctcagcactttgggaggctgaggcaggcggatcacttgaggttagaagttcaagaccagcctggccaacatggtgaaaccccatct---ctactaaaaatacaaaaattagccaggtgtgatggtgggtgcctgtaattccagctattctggaggctgaggcaagagaattgctttaactcaggaggcagaggctgcagtgagtcgaggtggtaccactgcactccagcctgggtgacagagtagaaccccatctcaaaa s panTro4.chr1 224968182 299 + 228333871 TAAGTACAGTGAggccaggcacagtgcactcacacctgtaatctcagcgctttgggaggctgaggcgggtggatcacttgaggttaggagttcaagaccagcctggccaacatggtgaaaccccatct---ctactaaaaatacaaaaattagccaggtgtgatggtgggtgcctgtaatcccagctattctggaggctgagacaagagaattgctttaactcaggaggcagaggctgcagtgagtcgaggtggtaccactgcactccagcctgggtgacagagtagaactccatctcaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226329687 297 - 229942017 TAAGTACAGTGAggcgaggtgcagtgcgctcacacctgtaatcccagcactttgggagactgaggcgggcggatcac--gaggtcaggagatcgaggccatcctggccaacatggtgaaaccccatct---ctactaaaaatacaaaaattagccaggtgtgatggtgggtgcctgtaatcccagctattctggaggctgaggcaagagaattgctttaactcaggaggcagaggctgcagtgagtcgaggtggtaccactgcactccagcctgggtgacagagtagaactccatctgaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140217839 278 - 143122389 TA---------Aggccgggcgcggtg-gctcacgcttgtaatcccagcactttgggaggctgaggcgggcggatcac--gaggtcaggagatcgagac------------cacggtgaaaccccgtctctactactaaaaatacaaaaattagccaggtgtgatggtgggtgcctgtaatcccagctattctggaggctgaggcaagagcattgcttgaactcgggaggtgaaggctgcagtgagtcgaggtggtaccactgcactccagcctgggtgacagagtggaactccatctcaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16929473 298 - 229590362 TAAGTACAGTGAggccaggcgcagtgcgctcacacctgtaatcgcagcactttgggaggccgaggcaggcggaacacttgaggttaggagttcatgaccagcctggccaacatggtgaaaccccatct---ctactaaaaatacaaaaattagccagatgtgatggtgggtgcctgtaatcccagctattctggaggctgaagcaggagaattgcttgaactcgggaggcagaggctgcagtgagtcgaggtggtactgctgcactccagcctgggttacagagtggaactccatctc-aaa i rheMac3.chr1 C 0 I 3 s macFas5.chr1 223692719 299 - 227556264 TAAGTACAGTGAggccaggcacagtgcgctcacacctgtaatcgcagcactttgggaggccgaggcaggcggatcacttgaggttaggagttcacgaccagcctggccaacatggtgaaaccccatct---ctactaaaaatacaaaaattagccagatgtgatggtgggtgcctgtaatcccagctattctggaggctgaagcaggagaattgcttgaactcgggaggcagaggctgcagtgagtcgaggtggcactgctgcactccagcctgggttacagagtggaactccatctcaaaa i macFas5.chr1 C 0 I 3 s papAnu2.chr1 16743027 299 - 220367699 TAAGTAcagtgaggccaggcgcagtgcgctcacacctgtaatcgcagcactttgggaggccgaggcaggcggatcacttgaggttaggagttcacgaccagcctggccaacatggtgaaaccccatct---ctactaaaaatacaaaaattagccagatgtgatggtgggtgcctgtaatcccagctattctggaggctgaagcaggagaattgcttgaactcgggaggcagaggctgcagtgagtcgaggtggcactgctgcactccagcctgagttacagagtggaactccatctcaaaa i papAnu2.chr1 C 0 I 3 s chlSab2.chr25 82541326 298 + 85787240 TAAGTGCAGTGAggccaggcgcagtgcgttcacacctgtaatcgcagcactttgggaggccgaggcaggcggatcacttgaggttaggagttcacgaccagcctggccaacatggtg-aaccccgtct---ctactaaaaatacaaaaattagccagatttgatggtgggtgcctgtaatcccagctattctggaggctggggcaggagaattgcttgaactcgggaggcagaggctgcagtgagtcgaggtggcaccgctgcactccagcctgggtgacagagtggaactccatctcaaaa i chlSab2.chr25 C 0 I 1051 s calJac3.chr19 14223160 298 - 49578535 TAACAGCAGTGAggccaggtgcagtg-gcttatgcctgtaatcccagcactttgggaggccaaggtaggcagatcacttgaggttaggtgttcgagactagcctggccaacatggtgaaactccgtct---ctactaaaaatacaaaaattagccaggtgtggtggtgggttcctataatcccagatactctggaggcttaggcaagagaatcgcttgaacttgggaggtggaggctgcagtgagccaaggtggcaccactgcactccagcctgggtgacagagtgggactctgtctcaaaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178805939 1 + 195471971 I e canFam3.chr7 36371929 1 + 80974532 I a score=12.000000 s hg38.chr1_KI270759v1_alt 213861 14 + 425601 aaaaaaaagaaaag s panTro4.chr1 224968481 9 + 228333871 aaaa-----aaaag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226329984 12 - 229942017 aaaa--aaTAATAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140218117 4 - 143122389 aaaa---------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16929774 4 - 229590362 aaaa---------- i rheMac3.chr1 I 3 C 0 s macFas5.chr1 223693021 4 - 227556264 aaaa---------- i macFas5.chr1 I 3 C 0 s papAnu2.chr1 16743329 4 - 220367699 aaaa---------- i papAnu2.chr1 I 3 C 0 s calJac3.chr19 14223458 4 - 49578535 aaaa---------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178805939 1 + 195471971 I e canFam3.chr7 36371929 1 + 80974532 I e chlSab2.chr25 82541624 1051 + 85787240 I a score=924479.000000 s hg38.chr1_KI270759v1_alt 213875 319 + 425601 aaaaaaTTAAGTATagtcatgtgtcactgaatgatggggatgtgttctgagaaatgaatcattaggtgattttgttgttgtttgaacatcatggagtgtacttccacaaatctagatggtatagcctcctacacacctaggctagagggtaggac-------------------------------tgttgctgtactgaatagtgtagccatttgtaacacaatggtaagtatttgtgtccctaaacatatctaaacacagaaaaggtacagtaaaaataagattatcttatgggaccaccagtatatatgtggttcgtccttgactgaaac---gttatacggtgcatgac s panTro4.chr1 224968490 319 + 228333871 aaaaaaTTAAGTATagtcatgtgtcactgaatgatggggatgtgttctgagaaatgaatcattaggtgattttgttgttgtttgaacgtcagggagtgtacttccacaaatctagatggtgtagcctcctacacaccgaggctagagggtaggac-------------------------------tgttgctgtactgaatagtgtagccaattgtaacacaatggtaagtatttgtgtccctaaacatatctaaacacagaaaaggtacagtaaaaataagattatcttatgggaccaccggtatatatgtggttcgtccttgactgaaac---gttatacggtgcatgac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226329996 353 - 229942017 TAATAATTAAGTATagtcatgtgtcactgaatgatggggatgtgttctgagaagtgaatcattaggtgattttgttgttgcttgaacgtcgtgaagtgtacttccacaaatctaggtggtgtagcctcctacacacctaggctagagggtaggactgttgctcctaagctacaaacccgtacagcatgttgctgtaccgaatagtgtagccaattgtaacataatggtaagtatttgtgtccctaaacatatctaaacacagaaaaggtacagtaaaaataagattatcttatgggacccccagtatatatgtggttcgtcctcgactgaaacattgttatatggtgcatgac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140218121 353 - 143122389 aaaaaaTTAAGTAcagtcatgtgtcagtgaatgatggggatgcgttctgagaaatgaatcagtaggtgattttgttgttgtttgagcgccatggagtgtacttccacaaatctcgatggtgtagcctcctacccacctaggctagagggcaggcctgttgctcctaagccacaaacctgtacagcatgttgctgtactgaatagtgtagccaactgtaacacaatggtaagtatttgtgtccctaaacatatctaaacacagaaaaggtacagtaaaaataagattatcttatgggaccaccagtatatatgtggttcatcctcgactgaaacgttgttatacagtgcatgac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16929778 353 - 229590362 aaaaaTTTAAGTAcagtcatgtgtcactgaacgatggggatgcattctgagaaatgaaccattaggtgattttgttgttgtttgaacatcatagcgtgtacctgcacaaatctggatggtgtagcctactgcacaccgaggctagaggacaggcctattgctcctgggctacacacttgtacagcgtgtcgctgtactgaatactgtagccaactgtaacacaatggtaagtatttgtgtccctaaacatacctaaacacagaaaaggtacagtaaaaataagattatcttatgggaccatcggtatatatgtggttcgtccttgactgaaacgtcgtcatatggtgcgtgac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223693025 353 - 227556264 aaaaaaTTAAGTAcagtcatgtgtcactgaacgatggggatgcattctgagaaatgaaccattaggtgattttgttgttgtttgaacatcatagcgtgtacctgcacaaatctggatggtgtagcctactgcacaccgaggctagaggacaggcctattgctcctgggctacacacttgtacagcgtgtcgctgtactgaatactgtagccaactgtaacacaatggtaagtatttgtgtccctaaacatacctaaacacagaaaaggtacagtaaaaataagattatcttatgggaccatcggtatatatgtggttcgtccttgactgaaacgtcgtcatatggtgcgtgac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16743333 353 - 220367699 aaaaaattaagtacagtcatgtgtcactgaACGATGGGGATGCGTTCTGAGAAATGAaccattaggtgattttgttgttgtttgaacaTCATAGCGTGTACCTGCACAAATCTGGATGGTGTAGCCTACTGCACACCGAGGCTAGAGGACAGgcctattgctcctgggctacacACCTGTACAGCGTGTcgctgtactgaatactgtagccaactgtaacacaatggtaagtatttgtgtccctaaacatacctaaacacagaaaaggtacagtaaaaataagatTATCTTATGGGACCATCGGTATATATGTGGTTCGTCCTTGACTGAAACGTCGTCATACAGTGCGTGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82542675 352 + 85787240 AAAAAATTAAGTGcagtcatgtgtcactgaacgatggggatgcgttctgagaaatgaaccattaggtgatttcgttgttgtttgaacatcatagcgtgtacttgcacaaatctggatggtgtagcctactgcacaccgaggctagaggacaggcctattgctcctgggctacacacctgtacagcatgtcgctgtactgaatactgtagccaactgtaa-acaatggtaagtatttgtgtccctaaacatacctaaacacagaaaaggtacagtaaaaataagattatcttatgggaccatcggtatatatgtggttcgtcctcgactgaaacgtcgtcatacggtgcgtgac i chlSab2.chr25 I 1051 C 0 s calJac3.chr19 14223462 344 - 49578535 --------GAGTAcagtcatgtgtcacttaacgatgaggatgtgttctaagaagtgaatgattaggtgattttgttactgtttgagcatcatggagtgtccttccacaaagctagacggtgtcatctactgcacccctaggctgtaggacagggctgtgactccttggctacagatctgtacagcttgtcgctgtaccgaatactgtaa-cacctgtaacacagtggtgagtgtttgtggacctaaacacatctccacatggaaaaggtacagtgaagatcaggtcatcttctgggaccactggtagatatgcggttcgtggctgatggaaatggcgtcatgcagagtgtggc i calJac3.chr19 C 0 C 0 e mm10.chr1 178805939 1 + 195471971 I e canFam3.chr7 36371929 1 + 80974532 I a score=269908.000000 s hg38.chr1_KI270759v1_alt 214194 80 + 425601 tgTATTTGGTTTAGCCCATGTTTTTATTTTGAAGAAATGCAGAACAAGTTTAAAATTGAATTGTTGAATTGTTGTCATTA s panTro4.chr1 224968809 80 + 228333871 tgTATTTGGTTTAGCCCATGTTTTTATTCTGAAGAAATGCAGAACAAGTTTAAAATTGAATTGTTGAATTGTTGTCATTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226330349 80 - 229942017 tgTATTTGGTTTAGCCCATGTTTTTATTTTGAAGAAATGCAGAACAAGTTTAGAATTGAATTGTTGAATTGTTGTCATTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140218474 80 - 143122389 tgTATTTGGTTTAGCCCATGTTTTTATTTTGAAGAAATGCAGAACAAGTTTAGAATTGAATTGTTGAATTGTTGTCATTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16930131 80 - 229590362 tgTATTTGGGTTAGTCCATGTTTTTATTTTGAAGAAATGCAGAACAAGTTTAGAATTTAATTGTTGAATTGTTGTCATTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223693378 80 - 227556264 tgTATTTGGGTTAGTCCATGTTTTTATTTTGAAGAAATGCAGAACAAGTTTAGAATTTAATTGTTGAATTGTTGTCATTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16743686 80 - 220367699 TGTATTTGGGTTagtctatgtttttattttgaagaaatgcAGAACAAGTTTAGAATTTAATTGTTGAATTGTTGTCATTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82543027 80 + 85787240 tgTATTTGGGTTAGTCCATGTTTTTATTTTGAAGAAATGCAGAACAAGTTTAGAATTGAATTGTTGAATTATTGTCATTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14223806 80 - 49578535 tgTGTTTGCTTTAGCCCGTGTTTTTATTCTGAAGAAATGCAGAACAAGTTTAGAATTGAATTGTCGAATTGTTGCCATTA i calJac3.chr19 C 0 C 0 s mm10.chr1 178805940 60 + 195471971 TGTATTTGGCTTAT------------TTCTCAGGAAATGCAGAATAGGATTCGAATT--------GAATTATTGTCATTA i mm10.chr1 I 1 C 0 e canFam3.chr7 36371929 1 + 80974532 I a score=213404.000000 s hg38.chr1_KI270759v1_alt 214274 55 + 425601 GTTGATAGCCTAATAAGAACATATTGTTCAAGTACAAGAATATCATTGATTTAAT s panTro4.chr1 224968889 55 + 228333871 GTTGATAGCCTAATAAGAACATATTGTTCAAGTACAAGAATATCATTGATTTAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226330429 55 - 229942017 GTTGATAGCCTAATAAGAACATATTGTTGAAGTACAAGAATATCATTGATTTAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140218554 55 - 143122389 GTGGACAGCCTAATAAGAACATATTGTTCAAGTACAAGAATATCATTGATTTAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16930211 55 - 229590362 GTTGATAGCCTAATAAGAACATATTGTTCAAGTACAAGAATATCATTGATTTAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223693458 55 - 227556264 GTTGATAGCCTAATAAGAACATATTGTTCAAGTACAAGAATATCATTGATTTAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16743766 55 - 220367699 GTTGATAGCCTAATAAGAACATATTGTTCAAGTACAAGAATATCATTGATTTAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82543107 55 + 85787240 GTTGATAGCCTAATAAGAACATATTGTTCAAGTATAAGAATATCATTGATTTAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14223886 55 - 49578535 ATTGAGAGCCTAATAAGAACATATTGTTCAAGGAGAAGAGTATTATTGATTTAAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178806000 52 + 195471971 TTCCACAGTCTAATGAGAACA---TGCCCAAGAGCATGACTGTCAAGGgtttagt i mm10.chr1 C 0 I 331 s canFam3.chr7 36371930 52 + 80974532 GTTCATAGCCTA---AAAACATACTATTCAAGTCCAAGAACGTTATTGATTTAAT i canFam3.chr7 I 1 C 0 a score=233738.000000 s hg38.chr1_KI270759v1_alt 214329 80 + 425601 TACCCTGAAAATATAATTTTGAAAAATATCTACATTTTTTAAAAATTAAATTTTCGT----------------AGTGTAAACTAAAATTAAATACT s panTro4.chr1 224968944 80 + 228333871 TACCCTGaaaatataattttgaaaaatatctacattttttaaaaattaaattttCGT----------------AGTGTAAACTAAAATTAAATACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226330484 79 - 229942017 TACCCTGaaaatataattttacaaaa-atctacatttttttaaaattaaattttCGT----------------AGTGTAAACTAAAATTAAATACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140218609 80 - 143122389 TACCCTGAAAATATAATTTTGAAAAATATCTACATTTTTTAAAAATTAAATTTTCAT----------------AGCATAAACTAAAATTAAATACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16930266 79 - 229590362 TACCCTGaaaatataattttgaaaaatatctac-tttttttaaaattaaattttCAT----------------AGTGTAAACTAAAATTAAATACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223693513 79 - 227556264 TACCCTGAAAATATAATTTTGAAAAATATCTAC-TTTTTTTAAAATTAAATTTTCAT----------------AGTGTAAACTAAAATTAAATACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16743821 79 - 220367699 TAccctgaaaatataattttgaaaaatatctac-tttttttaaaattaaattttcat----------------agtgtaaactaaaattaaatact i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82543162 79 + 85787240 TACCCTGAAAATATAATTTTGAAAAATATCTAC-TTTTTTTTAAATTAAATTTTCAT----------------AGTGTAAACTAAAATTAAATACT i chlSab2.chr25 C 0 I 295 s calJac3.chr19 14223941 75 - 49578535 TACCTTGaaaatataattttgaaaaatatctacattt-----aaaaaaaatattCAC----------------ACTGTGAACAATAGTTAAATACT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36371982 94 + 80974532 GACCTTGAAAATGtaattttaaaaattatcta--tttaaaaaaaatcaaatatttatCAGTTAGTTAATAAAAAATGTGAGCATCACCTAAAGGTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178806052 331 + 195471971 I a score=19200.000000 s hg38.chr1_KI270759v1_alt 214409 10 + 425601 CAACTAACTg---- s panTro4.chr1 224969024 10 + 228333871 CAACTAACTG---- i panTro4.chr1 C 0 I 113 s ponAbe2.chr1 226330563 10 - 229942017 CAACTAACTG---- i ponAbe2.chr1 C 0 I 118 s nomLeu3.chr5 140218689 10 - 143122389 CAACTAACTG---- i nomLeu3.chr5 C 0 I 108 s rheMac3.chr1 16930345 10 - 229590362 AGACTAACTG---- i rheMac3.chr1 C 0 I 257 s macFas5.chr1 223693592 10 - 227556264 AGACTAACTG---- i macFas5.chr1 C 0 I 256 s papAnu2.chr1 16743900 10 - 220367699 aGACTAACTG---- i papAnu2.chr1 C 0 I 221 s calJac3.chr19 14224016 10 - 49578535 CAACTAACTG---- i calJac3.chr19 C 0 I 70 s canFam3.chr7 36372076 10 + 80974532 ----TCACTGTCAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178806052 331 + 195471971 I e chlSab2.chr25 82543241 295 + 85787240 I a score=422.000000 s hg38.chr1_KI270759v1_alt 214419 1 + 425601 a s nomLeu3.chr5 140218807 1 - 143122389 a i nomLeu3.chr5 I 108 C 0 s macFas5.chr1 223693858 1 - 227556264 a i macFas5.chr1 I 256 C 0 s calJac3.chr19 14224096 1 - 49578535 A i calJac3.chr19 I 70 C 0 s canFam3.chr7 36372086 1 + 80974532 G i canFam3.chr7 C 0 C 0 e mm10.chr1 178806052 331 + 195471971 I e rheMac3.chr1 16930355 257 - 229590362 I e chlSab2.chr25 82543241 295 + 85787240 I e papAnu2.chr1 16743910 221 - 220367699 I e ponAbe2.chr1 226330573 118 - 229942017 I e panTro4.chr1 224969034 113 + 228333871 I a score=1067.000000 s hg38.chr1_KI270759v1_alt 214420 2 + 425601 ga s nomLeu3.chr5 140218808 2 - 143122389 ga i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223693859 2 - 227556264 gc i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82543536 2 + 85787240 ga i chlSab2.chr25 I 295 C 0 s calJac3.chr19 14224097 2 - 49578535 GA i calJac3.chr19 C 0 I 1 s canFam3.chr7 36372087 2 + 80974532 GT i canFam3.chr7 C 0 C 0 e mm10.chr1 178806052 331 + 195471971 I e rheMac3.chr1 16930355 257 - 229590362 I e papAnu2.chr1 16743910 221 - 220367699 I e ponAbe2.chr1 226330573 118 - 229942017 I e panTro4.chr1 224969034 113 + 228333871 I a score=16938.000000 s hg38.chr1_KI270759v1_alt 214422 10 + 425601 gagag-------agaga s ponAbe2.chr1 226330691 10 - 229942017 gagag-------agaga i ponAbe2.chr1 I 118 C 0 s nomLeu3.chr5 140218810 10 - 143122389 gagag-------agaga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16930612 10 - 229590362 gagag-------agaga i rheMac3.chr1 I 257 C 0 s macFas5.chr1 223693861 10 - 227556264 gagag-------agaga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16744131 10 - 220367699 gagag-------agaga i papAnu2.chr1 I 221 C 0 s chlSab2.chr25 82543538 10 + 85787240 gagag-------agaga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14224100 9 - 49578535 GAAGC-------CAAG- i calJac3.chr19 I 1 C 0 s canFam3.chr7 36372089 17 + 80974532 GAGAACTACCCCAGGGA i canFam3.chr7 C 0 C 0 e mm10.chr1 178806052 331 + 195471971 I e panTro4.chr1 224969034 113 + 228333871 I a score=-5316.000000 s hg38.chr1_KI270759v1_alt 214432 7 + 425601 --------gagaga-----------------------g----------------------- s panTro4.chr1 224969147 7 + 228333871 --------GAGAGA-----------------------G----------------------- i panTro4.chr1 I 113 C 0 s ponAbe2.chr1 226330701 7 - 229942017 --------gagaaa-----------------------g----------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140218820 7 - 143122389 --------gacaga-----------------------g----------------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16930622 7 - 229590362 --------gagagc-----------------------g----------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223693871 7 - 227556264 --------gagagc-----------------------g----------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16744141 7 - 220367699 --------gagagc-----------------------g----------------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82543548 7 + 85787240 --------gagagt-----------------------g----------------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14224109 30 - 49578535 --------GAAAATACGGACTTGGAGCCCCTCTGCAGG----------------------- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36372106 38 + 80974532 TGGTCCAAGGAAAT-----------------------GCGGACTTTGAGCCCCCCCTGGAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178806052 331 + 195471971 I a score=1265801.000000 s hg38.chr1_KI270759v1_alt 214439 351 + 425601 -agagagagagagCCCTTCCCCAGCTAGTCTGGCAGCAAGTGATTT-----CTAAAGGCCAGAAATAGG-AAAAAAAAAA---TAATCGAATCAAATTGACTTTTGGAATTGTCCTTATGAAGCACAAGTCTACAACCTTTAACTCATAGAGAACACAGTGAGCATATCTGCTTTGACTGGCAACTTCA---AAAAACCCCTCTCCCAGAGGCTTGGGAAAACACATGTTGGACACAGACTAATGATAATGTGGAACAATTATTACAATGAACACAATAATTGTATTTGTTTTATGAACATGATAG---CCT-------------GAAGAAACCCATACCAAGAAATATTTTAC------------------------------------GTGTTGTCATCA-TTAAGAAGTCAGCA s panTro4.chr1 224969154 344 + 228333871 -AGAGAGAGAGAGCCCT-CCCCAGCTAGTCTGGCATCAAGTGATTT-----CTAAAGGCCAGAAATAGG-AAAAAAAAAA---TAATCAAATCAAATTGACTTTTGGAATTGTCCTTATGAGGCACAAGTCTACAACCTTTAACTCATAGAGAACACCGTGAGCATATCTGCTTTCACTGGCAACTTCA---AAAAACCCCTCTCCCAGAGGCTTGGGAAAACACACGTTGGACACAGACTAATGATAATGTGGAACAATTATTACAATGAACACAATAATTGT------TTTATGAACATGATAG---CCT-------------GAAGAAACCCATACCAAGAAATATTTAAC------------------------------------GTGTTGTCATCA-TTAAGAAGTCAGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226330708 386 - 229942017 -agagagagagagCCGT-CCCCAGCTAGTCTGGCAGCAAGTGATTT-----CTAAAGGCCAGAAATAGG-AACAAAAAAA---TAATTGAATCAAATTGACTTTTGGAATTGTCCTTATGAAGCACAAGTCTACAACCTTTAACTCATAGAGAACACAGTGAGCATATCTGCTTTGACTGGCAACTTCA---AAAAACCCATCTCCCAGAGGCTTGGGAAAACACATGTTGGACACAGACTAATGATGATGTGGAACAATTATTACAATGAACACAATAACTATATTTGTTTTATGAACATGATAG---CCT-------------GGAGAAACCCATACCAAGAAATATTTTACGCATTGTCATCATTAAGAAGTCAAGAAATATTTTATGCATTGTCATCA-TTAAGAAGTCAGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140218827 350 - 143122389 -agagagagagagCCCT-CCCCAGCTAGTCTGGCAGCAAGTGATTT-----CTAAAGGCCAGAAATAGG-AAAAAAGAAA---TAATTGAATCAAATTGACTTTTGGAATTGTCCTTATGAAGCACAAGTCTACAACCTTTAACTCATAGAGAACACAGTGAGCACATCTGCTTTGACTGGCAACTTCA---AAAAAACCCTCTCCCAGAGGCTTGGGAAAACACATGTTGGACACAGACTAATGATAATGTGGAACAATTATTACAATGAACACAATAATTATATTTGTTTTATGAACATGATAG---CCT-------------GAAGAAACCCATACCAAGAAATATTTTAC------------------------------------GTGTTGTCATCA-TTAAGAAGTCAGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16930629 350 - 229590362 -agagcgagagagCCCT-CCCTGGCTAGTCTGGCAGCAAGTGATTT-----CTAAAGGCTAGAAATAGGAAAAAAAAAAA---TAATCAAATTAAATTGACTTTTGGAATTGTCCTTATGAAGCACAAGTCTACAACCTTTAACTCATA-AGAACCCATTGAGCATATCTGCTTCGACAGGCAACTTCA---AAAAACCCCTCTCCCAGAGGCTTGGGAAAACACATGTTGGGCACAGACTAATGACGATGTGGAACAATTATTACAATGAACACAATAATTGTATTTGTCTTATGAACACGATAG---CCT-------------GAAGAAACCCATGCCAAGAAATATTTTAC------------------------------------GCATTGTCATCA-TTAAGAAGTCAGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223693878 350 - 227556264 -acagcgagagagCCCT-CCCTGGCTAGTCTGGCAGCAAGTGATTT-----CTAAAGGCTAGAAATAGGAAAAAAAAAAA---TAATTGAATTAAATTGACTTTTGGAATTGTCCTTATGAAGCACAAGTCTACAACCTTTAACTCATA-AGAACCCATTGAGCATATCTGCTTCGACAGGCAACTTCA---AAAAACCCCTCTCCCAGAGGCTTGGGAAAACACATGTTGGGCACAGACTAATGACGATGTGGAACAATTATTACAATGAACACAATAATTGTATTTGTCTTATGAACACGATAG---CCT-------------GAAGAAACCCATGCCAAGAAATATTTTAC------------------------------------GCATTGTCATCA-TTAAGAAGTCAGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16744148 349 - 220367699 -agagcgagcgagcCCT-CCCTGGCTAGTCTGGCAGCAAGTGATTT-----CTAAAGgctagaaatagg-aaaaaaaaaa---taatcgaATTAAATTGACTTTTAGAATTGTCCTTATGAAGCACAAGTCTACAACCTTTAACTCATA-AGAACCCATTGAGCATATCTGCTTCGACAGGCAACTTCA---AAAAACCCCTCTCCCAGAGGCTTGGGAAAACACATGTTGGACACAGACTAATGACGATGTGGAACAATTATTACAATGAACACAATAATTGTATTTGTCTTATGAACACGATAG---CCT-------------GAAGAAACCCATACcaagaaatattttat------------------------------------gcattgTCATCA-TTAAGAAGTCAGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82543555 349 + 85787240 -agagtgagcgagCCCT-CCCTGGCTAGTCCGGCAGCAAGTGATTT-----CTAAAGGCTAGAAATAGG-AAAAAAAAAA---TAATCGAATTAAATTGACTTTTGGAATTGTCCTTATGAAGCACAAGTCTACAACCTTTAACTTGTA-AGAACCCATTGAGCATATCTATTTCGACAGGCAACTTCA---AAAAACCCCTCTCCCAGAGGCTTGGGAAAACACATGTTGGACACAGACTAATGACGATGTGGAAAAATTATTACAATGAACACAGTAATTGTATTTGTCTTATGAACACGGAAG---CCT-------------GAAGAAACCCATACCAAGAAATATTTTAC------------------------------------GCATTGTCATCA-TTAAGAAGTCAGCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14224139 360 - 49578535 -AAAGAGAGGGAGCTCG-CCCCTGCCAGTCTGGCAGCAAGTGATTT-----CTAAAGGCCAGGAATAGG-GAAAA---------AATCGAATCCAATGGACTTCTGGAATTGCCCTTACGAAGCACACGTCTACAGCCTTGAGCTCAGA-AGAGCCCAGTAAGCGTGCCTGCTTCGACTGGCAAGTCCAG--AAAAATCCCTCTCCCAGAGGCTTGGGAAAACAAATGTTGGACACAGACAAATAATGATGTGGAAAAAATTTGACAATAAACACAATAATTATATTTGTTTTATGAACATGATAGAAACCCATGTTTCTTCATGGAAGAAACCCATCCCAAGAAATATTGTAC------------------------------------ACATTGTCATCA-TTAAAAAGTCAGCA i calJac3.chr19 C 0 I 310 s mm10.chr1 178806383 324 + 195471971 -AAAGAGAGAACGCCCT-CTCCTGCTAGACTGGCAGCAAGTGGTTTCCTTGCTAAAGGTCAGAAAT--G-GAAAAAACAA---TCATCTAATCAAATTGACTTTTAGAATTAACTTTGCAAAGCAC---------------AATTCACAGGGAGCCCAGAG-GCATATTTGTGTCAACAGATAACTTAAGAAGAAAATCTCACTCCCAAAGGCCTGGCAAAACACATGTTGGACACAGATTAATAATGATGCAGAAAATTAATTATAATGAACACAATTATTACATTCATTCTGTGAATGTGATAG---CCT-------------AGA------------AAATAACATATTAC----------------------------------------CATCATCA-CCTGGAAGCCAGCA i mm10.chr1 I 331 C 0 s canFam3.chr7 36372144 353 + 80974532 GAATAAAAGGAAGCCCA-CCCCTGCAGGTCTGGCAGCAAATGGTTTCTTTTCTAAAGGCCAGAAATGGA-AAAAAAAAAAAAGTCATCAAATCAAATTGACTTTTGGAATTAACCTTATAAATCTGAAGTCTACAGTCTTCAACTCACAGAGAACTCACTAACGATATTTCCTTCAACACGCAACTTCA---AAAACATCCATCC-------CTTGGTAGAACAAATGTTAGACACGGACTAATAATGATGTGGAAAAATAATTATAATGAAAACAATAATTATATTTGTTTTGTGAACATAATAG---CCT-------------GCAAAGACCCATATTACACAGTATTTCAT------------------------------------GGATTATCATCATTTAAGAAGTCAGCA i canFam3.chr7 C 0 C 0 a score=60456.000000 s hg38.chr1_KI270759v1_alt 214790 19 + 425601 AACCTTAAAGACAAAC--ACA s panTro4.chr1 224969498 19 + 228333871 AACCTTAAAGACAAAC--ACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331094 19 - 229942017 AACCTTAAAGACAAAC--ACG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140219177 19 - 143122389 AACCTTAAAGACAAAC--ACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16930979 19 - 229590362 AACCTTAAAGACAAAC--ACG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223694228 19 - 227556264 AACCTTAAAGACAAAC--ACG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16744497 19 - 220367699 AACCTTAAAGACAAAC--Acg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82543904 19 + 85787240 AACCTTAAAGACAAAC--ACG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178806707 21 + 195471971 AACATTAAGAACAAATGAAAG i mm10.chr1 C 0 C 0 s canFam3.chr7 36372497 19 + 80974532 AACCATAAAAATAAAC--AAA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14224499 310 - 49578535 I a score=39077.000000 s hg38.chr1_KI270759v1_alt 214809 17 + 425601 ATCTATTcatccatcca s panTro4.chr1 224969517 10 + 228333871 atctattcat------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331113 17 - 229942017 ATCTGTTcatccatcca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140219196 17 - 143122389 atccatccatccatcca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16930998 17 - 229590362 atctattcatccatcca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223694247 17 - 227556264 ATCTATTcatccatcca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16744516 17 - 220367699 atctattcatccatcca i papAnu2.chr1 C 0 I 262 s chlSab2.chr25 82543923 17 + 85787240 ATCTATTcatccatcca i chlSab2.chr25 C 0 C 0 s mm10.chr1 178806728 17 + 195471971 ACCCATTCatttattta i mm10.chr1 C 0 C 0 e canFam3.chr7 36372516 0 + 80974532 C e calJac3.chr19 14224499 310 - 49578535 I a score=7231.000000 s hg38.chr1_KI270759v1_alt 214826 3 + 425601 tcc s ponAbe2.chr1 226331130 3 - 229942017 tcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140219213 3 - 143122389 tcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931015 3 - 229590362 tcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223694264 3 - 227556264 tcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16744795 3 - 220367699 tcc i papAnu2.chr1 I 262 C 0 s chlSab2.chr25 82543940 3 + 85787240 tcc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178806745 3 + 195471971 ttc i mm10.chr1 C 0 I 844 e canFam3.chr7 36372516 0 + 80974532 C e calJac3.chr19 14224499 310 - 49578535 I e panTro4.chr1 224969527 0 + 228333871 C a score=20301.000000 s hg38.chr1_KI270759v1_alt 214829 13 + 425601 atccatccatcca s ponAbe2.chr1 226331133 13 - 229942017 atccacccattca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140219216 13 - 143122389 atccatccatcca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931018 13 - 229590362 atcctcccatcca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223694267 13 - 227556264 atccacccatcca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16744798 13 - 220367699 gtccacccgtccg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82543943 13 + 85787240 atccatccatcca i chlSab2.chr25 C 0 T 1879 e mm10.chr1 178806748 844 + 195471971 I e canFam3.chr7 36372516 0 + 80974532 C e calJac3.chr19 14224499 310 - 49578535 I e panTro4.chr1 224969527 0 + 228333871 C a score=62553.000000 s hg38.chr1_KI270759v1_alt 214842 64 + 425601 tccacccattcatccatccatcca----------cccattcatcca------tccatccatccatccatccatccatcca s ponAbe2.chr1 226331146 70 - 229942017 tccatctatccatccatccatcca----------tccatccatccaaaaaaggtcatccatccatccattcatccatcca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140219229 64 - 143122389 tccatccacccatccatccatcca----------tccatccatcca------ttcatccatccactcatccatccatcca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931031 64 - 229590362 tccatccctccatccatccaccca----------tccatccaacca------tccaaccatccaaccatccatccattca i rheMac3.chr1 C 0 I 376 s macFas5.chr1 223694280 74 - 227556264 tccatccacccatccatccatccannnnnnnnnncccatccatcca------tccacccatccatccatccatccatcca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16744811 64 - 220367699 tccgtccacccgtccgtctgtcca----------cccgcccacctg------tccatccactcgcccatccatccatcca i papAnu2.chr1 C 0 C 0 e mm10.chr1 178806748 844 + 195471971 I e canFam3.chr7 36372516 0 + 80974532 C e calJac3.chr19 14224499 310 - 49578535 I e chlSab2.chr25 82543956 1879 + 85787240 T e panTro4.chr1 224969527 0 + 228333871 C a score=7995.000000 s hg38.chr1_KI270759v1_alt 214906 11 + 425601 cccacccaccc s panTro4.chr1 224969527 2 + 228333871 ---------cc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331216 11 - 229942017 tccatccatcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140219293 11 - 143122389 tccatccatcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931471 11 - 229590362 cccatccatcc i rheMac3.chr1 I 376 C 0 s papAnu2.chr1 16744875 11 - 220367699 cccattcatcc i papAnu2.chr1 C 0 C 0 e mm10.chr1 178806748 844 + 195471971 I e canFam3.chr7 36372516 0 + 80974532 C e calJac3.chr19 14224499 310 - 49578535 I e chlSab2.chr25 82543956 1879 + 85787240 T e macFas5.chr1 223694354 0 - 227556264 C a score=5922.000000 s hg38.chr1_KI270759v1_alt 214917 3 + 425601 atc s panTro4.chr1 224969529 3 + 228333871 atc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331227 3 - 229942017 atc i ponAbe2.chr1 C 0 I 328 s nomLeu3.chr5 140219304 3 - 143122389 atc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931482 3 - 229590362 atc i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16744886 3 - 220367699 atc i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14224809 3 - 49578535 atc i calJac3.chr19 I 310 C 0 e mm10.chr1 178806748 844 + 195471971 I e canFam3.chr7 36372516 0 + 80974532 C e chlSab2.chr25 82543956 1879 + 85787240 T e macFas5.chr1 223694354 0 - 227556264 C a score=2100.000000 s hg38.chr1_KI270759v1_alt 214920 1 + 425601 c s panTro4.chr1 224969532 1 + 228333871 c i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331558 1 - 229942017 c i ponAbe2.chr1 I 328 C 0 s nomLeu3.chr5 140219307 1 - 143122389 c i nomLeu3.chr5 C 0 I 991 s rheMac3.chr1 16931485 1 - 229590362 c i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16744889 1 - 220367699 c i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14224812 1 - 49578535 c i calJac3.chr19 C 0 C 0 e mm10.chr1 178806748 844 + 195471971 I e canFam3.chr7 36372516 0 + 80974532 C e chlSab2.chr25 82543956 1879 + 85787240 T e macFas5.chr1 223694354 0 - 227556264 C a score=37860.000000 s hg38.chr1_KI270759v1_alt 214921 20 + 425601 atccatccatccatccatcc s panTro4.chr1 224969533 20 + 228333871 atccatccacccatccatcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331559 20 - 229942017 atccatccatccatccatcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140220299 20 - 143122389 atccatccatccatccatcc i nomLeu3.chr5 I 991 C 0 s rheMac3.chr1 16931486 20 - 229590362 acccatccatccatccatcc i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16744890 20 - 220367699 atccatccatccatccatcc i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14224813 20 - 49578535 atccatccatccattcatcc i calJac3.chr19 C 0 C 0 e mm10.chr1 178806748 844 + 195471971 I e canFam3.chr7 36372516 0 + 80974532 C e chlSab2.chr25 82543956 1879 + 85787240 T e macFas5.chr1 223694354 0 - 227556264 C a score=636274.000000 s hg38.chr1_KI270759v1_alt 214941 324 + 425601 atccatccatccatccatccatccatTCTGTaagtg-tttattgagtatccactgcatagcatgcaccattcctggcagttaagaa----aata----aaag-------------gcctcactctcatgg----aacttacatCAGAAAGGGCAATATTAATGATCAGCCCTGACCACATGCCTTTCCCTATTAATGATCAGCCCGGACCACATGCCTTTCCCTTAG----GGAACATTGTAGGATGAATGTTCCctgtggtctgaatgtttgtgtctccctctaaattcataagctgaaatcctaacccataagatgatgtcattGTAACATTGTAGGGTGTATTTTAGTTGG s panTro4.chr1 224969553 324 + 228333871 atccatccatccatccatccatccatTCTGTaagtg-tttattgagtatccactgcatagcacgcaccattcctggcagttaagaa----aata----aaag-------------gcctcactctcatgg----aacttacatCAGAAAGGGCAATATTAATGATCAGCCCTGACCACATGCCTTTCCCTATTAATGATCAGCCTGGACCACATGCCTTTCCCTTAG----GGAACATTGTAGGATGAATGTTCCctgtggtctgaatgtttgtgtctccctctaaattcataagctgaaatcctaacccataagatgatgtcattGTAACATTGTAGGGTGTATTTTAGTTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331579 294 - 229942017 atccatccatccatccatccatccatccTGTaagtg-tttattgagtatccactgcatagcatgcaccattcttggcagttaagaa----aata----aaag-------------gcctcactctcatgg----aacttatatCAGAAAGGGCAATATTA------------------------------ATTAATGATCAGCCTGGACCACATGCCTTTCCTTTAG----GGAACATTGTAGGATGAATGTTCCctgtggtctgaatgtttgtgtctccctctaaattcataagctgaaatcctaacccgtaagatgatgtcattTTAACATTGTAGGGTGTATTTTAGTTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140220319 290 - 143122389 atccatccatccatccatccatccatTCTGTaagtg-tttattgagtatccactgcatagcacgcaccattcttggcagttaagaa----aaga----aaag-------------gcctcactctcatgg----aacttacatcagaatgggCAAT----------------------------------ATTAATGATCAGCCCGGACCACATGCCTTTCCCTTAG----GGAACATTGTAGGATGAATGTTCCctgtggtctgaatgtttgtgtctccctctaaattcataagctgaaatcctaacccataaggcgatgtcattGTAACATTGTAGGGTGTATTTTAGTTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931506 289 - 229590362 atccatccatccatccatccattcaTTCTGTAAGTGTtttattgagtatccactgcatagcatg--ccattcttggcagttaagaa----aaca----aaag-------------gcctcactctcatgg----aacttacatCAGAAAGGACAAT----------------------------------ATTAATGATCAGCCCTGACCACATGCCTTTCCGTTAG----GGAACATTGTAGGATGAACGTTCCctgtggtgtgaatgtttgtgtctccctctaaattcataagttgaaatcctaacccataagatgacatcattgCAACATTGTAGGGTGTAGTTTAGTTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223694354 288 - 227556264 -tccatccatccatccatccatTCATTCTGTAAGTGTTTTATTGAGTATCCACTGCATAGCATG--CCATTCTTGgcagttaagaa----aaca----aaag-------------gcctcactctcatgg----aacttacatCAGAAAGGACAAT----------------------------------ATTAATGATCAGCCCTGACCACATGCCTTTCCGTTAG----GGAACATTGTAGGATGAACGTTCCctgtggtgtgaatgtttgtgtctccctctaaattcataagttgaaatcctaacccataagatgacatcattgCAACATTGTAGGGTGTAGTTTAGTTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16744910 289 - 220367699 atccatccatccatccatccattcattctgtAAGTGTTTTATTGAGTATCCATTGCATAGCATG--CCATTCTTGgcagttaagaa----aaca----aaag-------------gcctcactctcatgg----aacttacatcAGAAAGGACAAT----------------------------------ATTAATGATCAGCCCTGACCACATGCCTTTCTGTTAG----GGAACATTGTAGGATGAACGTTCCCTGTggtgtgaatgtttgtgtctccctctaaattcataagttgaaatcctaacccatAAGATGACATCATTGCAACATTGTAGGGTGTAGTTTAGTTGG i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14224833 304 - 49578535 atccTCCCCATCTTCC-ttcattcattctgtg-----tttattgagtatctactgcataccacacaccattcttggtaattaagaaaatcaaca----aaagcccttatttttttgtcttaatctcatgg----aacttacatCAGAAAGGGCAAA----------------------------------ATTAATGATC-GCTCTGACGATGTGCCTTTACCTTAGGGAAGGAACATTGAAGGATGAATGTTCCctgtgctcggaatgtttgtgtctccttctcagttcataagttgaaatcctaagccat-agatgatatcaCTGCAATATTGTAGGCTGTGTTTTAGTTGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36372516 197 + 80974532 AAAAATCTGTTTATTCAGTTGCtcattctacaagtg-tttatggagtatctactatgtaacaggcaccattcttggcagtaaataa----aacaaatgaaag-------------cctttgcccttatgggcaaggcttacattggagcaggagATATGA------------------------------AGC----ATCAGCTCAGCCCACATGCCTTCCCTT--G----TGGACACCATAGGATGAGCA-------------------------------------------------------------------------------------AGGG-------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178806748 844 + 195471971 I e chlSab2.chr25 82543956 1879 + 85787240 T a score=123461.000000 s hg38.chr1_KI270759v1_alt 215265 34 + 425601 TGTGGATATGGAGGCAGAAAAGCAAGGATACTGG s panTro4.chr1 224969877 34 + 228333871 TGTGGATATGGAGGCAGAAAAGCAAGGATACTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331873 34 - 229942017 TGTGGATATGGAGGCAGAAAAGCAAGGATACTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140220609 34 - 143122389 TGTGGATCTGGAGGCAGAAAAGCAAGGATACTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931795 34 - 229590362 TGTGGATATGGAGGCAGAAAAGCAAGGATACTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223694642 34 - 227556264 TGTGGATATGGAGGCAGAAAAGCAAGGATACTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16745199 34 - 220367699 TGTGGATATGGAGGCAGAAAAGCAAGGATACTGG i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14225137 34 - 49578535 TGTGGATATGGAGGCAGAAAAGCAAAGATATTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178807592 34 + 195471971 TGTGGATAGTGAGACAGAAAAACAAAGATCCTGG i mm10.chr1 I 844 C 0 s canFam3.chr7 36372713 34 + 80974532 TGTGGGTATGGAGGCAGGGAATCGAAAACACTGG i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82543956 1879 + 85787240 T a score=111976.000000 s hg38.chr1_KI270759v1_alt 215299 42 + 425601 -------------TGAACCTGGGGAAT----------------GCTTAAGAGGTTGGACTGTGCTGTACCC s panTro4.chr1 224969911 42 + 228333871 -------------TGAACCTGGGGAAT----------------GCTTAAGAGGTTGGACTGTGCTGTACCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331907 42 - 229942017 -------------TGAACCTGGGGAAT----------------GCTTAAGAGGTTGGACTATGCTGTACCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140220643 42 - 143122389 -------------TGAACCTGGGAAAT----------------GCTTAAGAGGTTGGACTGTGCTGTACCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931829 42 - 229590362 -------------TGAACCTGGGGAAT----------------GCTTAAGGGGTTGGACTGTGCTGTACCC i rheMac3.chr1 C 0 I 4 s macFas5.chr1 223694676 42 - 227556264 -------------TGAACCTGGGGAAT----------------GCTTAAGGGGTTGGACTGTGCTGTACCC i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16745233 42 - 220367699 -------------TGAACCTGGGGAAT----------------GCTTAAGAGGTTGGACTGTGCTGTAccc i papAnu2.chr1 C 0 I 1 s calJac3.chr19 14225171 42 - 49578535 -------------TGAATCTGAGGAAT----------------GCCTAAGAGGCTGGACTGTGCTGTACCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36372747 71 + 80974532 GGAATCGAAAACCTGAAGGCAGGGAATCGAAACACTGGGAGTCTCTCAGAAGGCTGGACTGTCCTGCACCC i canFam3.chr7 C 0 C 0 e mm10.chr1 178807626 0 + 195471971 C e chlSab2.chr25 82543956 1879 + 85787240 T a score=4736.000000 s hg38.chr1_KI270759v1_alt 215341 3 + 425601 GTT s panTro4.chr1 224969953 3 + 228333871 TTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331949 3 - 229942017 TTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140220685 3 - 143122389 TTT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223694719 2 - 227556264 -TT i macFas5.chr1 I 1 I 1 s papAnu2.chr1 16745276 2 - 220367699 -tt i papAnu2.chr1 I 1 I 1 s calJac3.chr19 14225213 2 - 49578535 -TT i calJac3.chr19 C 0 I 1 s canFam3.chr7 36372818 3 + 80974532 TTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178807626 0 + 195471971 C e rheMac3.chr1 16931871 4 - 229590362 I e chlSab2.chr25 82543956 1879 + 85787240 T a score=2980.000000 s hg38.chr1_KI270759v1_alt 215344 15 + 425601 A---------AAAAGCAATAAACA s panTro4.chr1 224969956 15 + 228333871 A---------AAAAGCAATGAACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331952 15 - 229942017 A---------AAAAGCAATAAACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140220688 15 - 143122389 A---------AAAAGCAACAAACA i nomLeu3.chr5 C 0 C 0 s canFam3.chr7 36372821 15 + 80974532 GTTAttttttaaaga--------- i canFam3.chr7 C 0 I 187 e mm10.chr1 178807626 0 + 195471971 C e calJac3.chr19 14225215 1 - 49578535 I e rheMac3.chr1 16931871 4 - 229590362 I e chlSab2.chr25 82543956 1879 + 85787240 T e papAnu2.chr1 16745278 1 - 220367699 I e macFas5.chr1 223694721 1 - 227556264 I a score=150590.000000 s hg38.chr1_KI270759v1_alt 215359 295 + 425601 ggctgggcgtggtggctcacgcctgtaatcccagcattttgggaggccgaggcgggcggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctttactaaaaatacaaaaaattagccaggtgtggtggcgagcacctgtagtcccagctactccgaaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcaccactgcactccatccagcctgagtgacagagcgagactccgtcttaaaaaaaaa------a s panTro4.chr1 224969971 294 + 228333871 ggctgggcgtggtggctcacgcctgtaatcccagcattttgggaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaacagggtgaaaccccgtctttactaaaaatacaaaaaattagccaggtgtggtggcgggcgcctgtagtcccagctaccccggaggctgaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagccgagatcgcaccactgcactccatccagcctgagtgacagagcgagactccgtctcaaaaaaaaa------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226331967 294 - 229942017 ggccgggcatggtgactcacgcctgtaatcccagcattttgggaggccgaggtgggcggatcacaaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagccaggtgtggtggcgagcacctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacccgggaaatggagcttgcagtgaaccaagatcgcaccactgccctccatccagcctgagtgacagagcgagactctgtctcaaaaaaaaa------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140220703 301 - 143122389 ggccgggcgtggtggctcacgcctgtaatcccagcattttgggaggccaaggtgggtggatcacgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctttactaaaaacacaaaaaattagccaggtgtggtggtgggctcctgtggtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggcagagcttgcagtgagccgagatcgcaccaccgtactccatccagcctgagtgacaaagcgagactccgtctcaaaaaaaaaaaaaaaa i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178807626 0 + 195471971 C e canFam3.chr7 36372836 187 + 80974532 I e calJac3.chr19 14225215 1 - 49578535 I e rheMac3.chr1 16931871 4 - 229590362 I e chlSab2.chr25 82543956 1879 + 85787240 T e papAnu2.chr1 16745278 1 - 220367699 I e macFas5.chr1 223694721 1 - 227556264 I a score=1911.000000 s hg38.chr1_KI270759v1_alt 215654 1 + 425601 a s nomLeu3.chr5 140221004 1 - 143122389 a i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931875 1 - 229590362 A i rheMac3.chr1 I 4 C 0 s macFas5.chr1 223694722 1 - 227556264 A i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16745279 1 - 220367699 a i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82542077 1 + 85787240 A i chlSab2.chr25 T 1879 C 0 s canFam3.chr7 36373023 1 + 80974532 A i canFam3.chr7 I 187 C 0 e mm10.chr1 178807626 0 + 195471971 C e calJac3.chr19 14225215 1 - 49578535 I e ponAbe2.chr1 226332261 0 - 229942017 C e panTro4.chr1 224970265 0 + 228333871 C a score=10200.000000 s hg38.chr1_KI270759v1_alt 215655 4 + 425601 aaaa s ponAbe2.chr1 226332261 1 - 229942017 ---a i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221005 4 - 143122389 aaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931876 4 - 229590362 AAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223694723 4 - 227556264 AAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16745280 4 - 220367699 aaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82542078 4 + 85787240 AAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14225216 4 - 49578535 AAAA i calJac3.chr19 I 1 C 0 s canFam3.chr7 36373024 4 + 80974532 AAAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178807626 0 + 195471971 C e panTro4.chr1 224970265 0 + 228333871 C a score=1654466.000000 s hg38.chr1_KI270759v1_alt 215659 478 + 425601 GCAATAAACAGAATCTCATGCTT-----------CTATACAATAA-AAATAAC-------CATCTTCCC-TATAGATGATGAAGAGTCTGTTAATATAATCTGACAGGCTTGTTTTGGAAAATATTTAGATACTT--ATACATCCAGATATATTCCAAACCATAGCCTTGTAAAACCTCTGAGCTAGCGCAATCCTTGAGTATAAGTCTACCTCCACCTAGACCAATGTTTCCAAAC-CATTCTGTGGCTGGGAAGACTGGAAGGACCCCCAGGCTGACCCTGTTGGGAAGACATGCAACAAGGCTTACTTCTTCAGTGGTGTCAGTGATTTTGAGCCAGTTCTGAC--------------------------------------------Catccactcatccgtctgtatttgtgtagtgctcactatagacaaggcaattttggggaatgcagttgtaggaaagatagacatggctcctgaccttatgaaatgttcagtcttgtgaggaagacacaaataattacagccca-ttgtaaGAAGC s panTro4.chr1 224970265 478 + 228333871 GTAATAAACAGAATCTCATGCTT-----------CTATACAATAA-AAATAAC-------CATCTTCCC-TATAGATGATGAAGAGTCTGTTAATATAATCTGACAGGCTTGTTTTGGAAAATATTTAGATACTT--TTACATCCAGATATATTCCAAACCATAGCCTTGTAAAACCTCTGAGTTAGCGCAATCCTTGAGTGTAAGTCTACCTCCACCTAGATCAATCTTTCCAAAC-CATTCTGTGGCTGGGAAGACTGGAAGGACCCCCAGGCTGACCCTGTTGGGAAGACATGCAACAAGGCTTACTTCTTCAGTGGTGTCAGTGATTTTGAGCCAGTTCTGAC--------------------------------------------CATCCACTCATCCGTCTGtatttgtgtagtgctcactatagacaaggcaattttggggaatgcagttgtaggaaagatagacatggctcctgaccttatgaaatgttcagtcttgtgaggaagacacaaataattacagccca-TTGTAAGAAGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226332262 478 - 229942017 GCAATAAACAGAATCTCATGCTT-----------CTATACAATAA-AAATAAC-------CATCTTCCC-TACAGATGATGAAGAGTCTGTTAATATAATCTGACAGGCTTGTTTTGGAAAATATTTAGATGCTT--ATACATCCAGATATATTCCAAACAATTGCCTTGTAAAACCTCTGAGCTAGTGCAATCCTTGAGTATAAGTCTACCTCCACCTAGACCAACGTTTCCAAAC-CATTCTGTAGCTGGGAAGACTGGAAGGACCCCCAGGCTGACCCTGTTGGGAAGACATGCAACAAGACTTCCTTCTTCAGTGGTGTCAGTGATTTTGAGCCAGTTCCGAC--------------------------------------------CATCCACTCATCCGTCTGtatttgtgtagtgctcactatagacaaggcaattttggggaatgcagttgtaggaaaggtagacatggctcctgaccttatgaagtgttcagtcttgtgaggaagacacaaataattacagccca-ttgtaagaagc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221009 466 - 143122389 GCAATAAACAGAATCTCATGCTT-----------CTATACAATAA-AAATAAC-------CATCTTTCC-TACAGATGATGAAGAGTCTGTTAATATAATCTGACAGGCTTGTTTTGGAAAATATTTAGATACTT--ATACATCCAGATATATTCTAAACCATAGCCTTGTAAAACCTCTAGGTTGATG------------ATAAGTCTACCTCCACCTAGACCAATGTTTCCAAAC-CATTCTGTGGCTGGGAAGACTGGAAGGACCCCCAGGCTGACCCTGTTGGGAAGACATGCAACAAGCCTTACTTCTTCAGTGGTGTCAGTGATTTTGAGCCAGTTCCGAC--------------------------------------------CATCCACTCATCCGTCTGtatttgtgtagtgctcactacagacaaggcagttttggggaatgcagttgtaggaaagatagacacggctcctgaccttatgaaatgttcagtcttgtgaggaagacacaaataattacagccca-ttgtaagaagc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16931880 477 - 229590362 GCAATACACAGAATCGCATGCTT-----------CTATACAATAA-AAATAAC-------CATCTTCCC-TACAGATGATGAAGAGTCTTTTAATATAATCTGACAGGCTTGTTTTGGAAAATATTTAGATACTT--ATACATGCAGATACATCCCAAACCATAGCCTTGTAAGACCTCTGAGCTAGAGCAATCCTTGAGTCTAAGTCTACCTCCACCTAGACCCATGTTTCCCAAC-CATTCCGTGGCTAGGAAGACTGGAAGGATG-CCAGGCTGACCCTGTTGGGAAGACACGCAGCAAGGCTTACTTCTTCGGTGGTGGCAGTGATTTTGAGCCAGTTCCGAC--------------------------------------------CATCCACTCACCCATCTGTATTTGTGTAGTGCCCACTATAGACGAGGCAATTTTGGGGAATGCAGTTGTAGGAAAGATAGACATGGCTCCTGACCTTATGAAGTGTTCAATCTTGCGAGGAAGACACAAATAATTATAGCACG-TTGTAAGAAGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223694727 477 - 227556264 GCAATACACAGAATCGCATGCTT-----------CTATACAATAA-AAATAAC-------CATCTTCCC-TACAGATGATGAAGAGTCTTTTAATATAATCTGACAGGCTTGTTTTGGAAAATATTTAGATACTT--ATACATGCAGATACATCCCAAACCATAGCCTTGTAAGACCTCTGAGCTAGAGCAATCCTTGAGTCTAAGTCTACCTCCACCTAGACCCATGTTTCCCAAC-CATTCCGTGGCTAGGAAGACTGGAAGGATG-CCAGGCTGACCCTGTTGGGAAGACACGCAGCAAGGCTTACTTCTTCGGTGGTGGCAGTGATTTTGAGCCAGTTCCGAC--------------------------------------------CATCCACTCACCCATCTGTATTTGTGTAGTGCCCACTATAGACGAGGCAATTTTGGGGAATGCAGTTGTAGGAAAGATAGACATGGCTCCTGACCTTATGAAGTGTTCAATCTTGCGAGGAAGACACAAATAATTATAGCACA-TTGTAAGAAGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16745284 478 - 220367699 gcaatacacaGAATCGCATGCtt-----------ctatacaataa-aaataac-------catctTCCC-TACAGATGATGAAGAGTCTTTTAATATAATCTGACAGgcttgttttggaaaatatttagatACTT--GTACATCGAGATACATCCCAAACCACAGCCTTGTAAGACCTCTGAGCTAGAGCAATCCTTGAGTCTAAGTCTACCTCCACCTAGACCCATGTTTCCCAAC-CATTCCGTGGCTAGGAAGACTGGAAGGATGCCCAGGCTGACCCTGTTGGGAAGACACACAGCAAGGCTTACTTCTTCGGTGGTGGCAGTGATTTTGAGCCAGTTCCgac--------------------------------------------catccactcacccatctgTATTTGTGTAGTGCCCACTATAGACGAGGCAATTTTGGGGAATGCAGTTGTAGGAAAGATAGACATGGCTCCTGACCTTATGAAGTGTTCAATCTTGCGAGGAAGACACAAATAATTATAGCACA-TTGTAAGAAGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82542082 478 + 85787240 GCAATACACAGAATCGCATGCTT-----------CTGTACAATAA-AAATAAC-------CATCTTCCC-TACAGATGATGAAGAGTCTTTTAATATAATCTGACAGGCTTGTTTTGGAAAATATTTAGATACTT--ATACATCCAGATACATCCCAAACCATAGCCTTGTAAGACCTCTGAGCTAGAGCAATCCTTGAGTCTAAGTCTACCTCCACCTAGACCCATGTTTCCCAAC-CATTCTGTGGCTAGGAAGACTGAAAGGATCCCCAGGCTGACCCTGTAGGGAAGACATGCAGCAAGGCTTACTTCTTTGGTGGTGTCGGTGATTTTGAGCCAGTTCCGAC--------------------------------------------CATCCACTCACCCATCTGTATTTGTGTAGTGCCCACTATAGATGAGGCAATTTTGGGGAATGCAGTTGTAGGAAAGATAGACATGGCTCCTGGCCTTATGAAGTGTTCAATCTTGCAAGGAAGACACAAATAATTATAGCACA-TTGTAAGAAGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14225220 477 - 49578535 GCAATAAACAGAATCTCATGCTT-----------CTATACAATAA-AAATAAC-------CACCTTCCC-TACAGATGATGAAGAATCTGTTCCTATAATCTGACAGGCTTGTTTTGGAAAGTATTCAGATACTT---TATATCCATATTCATCCCAAAGCATAGCCTTGTAAAGCCTGTGAGCTGGAGCCATCCTTGAATATAAGTCTACCTCCATCTAGACCGATGTTTCCAAAC-CATTCTGTGGATGGGAAGACTGTAAGGACCCCGGGGCTGATCCCGTTGGGAAGACATGCAGCTAGATTTACTTTTTCAGTGGTGTCAGTGAATTTGAGCCAATTCCGTC--------------------------------------------CCTCCACTCATCCACCTGTATTCGTGTAGGGCTCACTATAGATAAGGCAATTTTGgggaaaacagttgtaggaaagatagacatggctcctgaccttgcaaagtgctcagtcttgcgaggaagatacacatAATTACAGCCCA-TTGTAGGAAGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178807626 502 + 195471971 GCAATCAGAGAAGCCTCTGGTTTAGAGGGCCACACTAAACAACAA-CAACAGCCCAGAATCATATCCCCTTATGTACAGTGAAGTTCCTGTTAAGGTACCCTGCCAAGCTTGTTAT---AAAT---------------TATGGACAAATGCATCTGAAAGCAT--CCCTGCAGGGCCTCTGCACCGGAGAAATCCTTAGTTAAAAATC--ACTCCAGATAGACCAGTGATTCTAAACTCATT--ATGGAGGAGGAGAATATGGGGACTCTAAGGCTGATCCTGTCAAGAAG---TGCAGCCAGATTTATATTTTCTGTAATACCAATGA-TGTAAACTAACCCTGTCTATCCTCCCAACTGTTCATGTACTCAACAATACACTCATGCATGTATCCATTCATCCATTCACATATGTGTGGTTTGCATCCTG------------TTGGGGAATACACCTTTAGAAATG--AGAGCTGGCTTGTGACCTTAAAGAGCTTTCAGTCCTGTGAGGATGATACAAGTACCTGCAGCCAA-TTGTAAGAGGT i mm10.chr1 C 0 C 0 s canFam3.chr7 36373028 455 + 80974532 GAAGTCTACAGAATCTTATTTTT-----GCCCTCGTATAAGATAAGAAATAAT-------CATCTTTCC-CACAAATGATGAAGAACCTATTAATATACCTTGACAGTCTTGTTTTGG-AAATATTTAGAAACTCAGATACATCCAAAAATTCCCCCAAGCATAGCCTTGCAGAACCCCTGGGCTTGAGGAATCCGTAATGAAAAGTC-ACCTCCACCTAGACCATGTTTTCCAAGC-TCTTCCATTGATGGGAAGCGTGGGAGGACCATAGGGCTCACCCTACCAGGAAGACCTACAGCCAGACTTTCGTCTTCAG---GGTCAGTGATTTGGGGCTAAT--------------------------------------------------CCTCCATCTGACCATCCAGGTTTATGTAgtgtt----------------------gggaacatagctgcaggaaagatggatctggctcctgactttatggtgttttcagtcttgggaggaagaTGCAAGGAATCACAGGCCAGTTGTAAGATGC i canFam3.chr7 C 0 I 65 a score=47779.000000 s hg38.chr1_KI270759v1_alt 216137 23 + 425601 GGTAAGGTGCTTTTGTACCCTTT s panTro4.chr1 224970743 23 + 228333871 AGTAAGGTGCTTTTGTACCCTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226332740 23 - 229942017 ggtaaggtGCTTTTGTACGCTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221475 23 - 143122389 ggtaaggtGCTCTTGTACCCTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16932357 22 - 229590362 AGTAAGGTGCT-TTGGACCCTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223695204 22 - 227556264 AGTAAGGTGCT-TTGGACCCTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16745762 22 - 220367699 AGTAAGGTGCT-TTGGACCCTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82542560 22 + 85787240 AGTAAGGTGCT-TTGGACCCTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14225697 20 - 49578535 AGTAAGGCG---TGTCACCCTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178808128 16 + 195471971 GGTGT-------GTGTATCCCTC i mm10.chr1 C 0 C 0 e canFam3.chr7 36373483 65 + 80974532 I a score=31543.000000 s hg38.chr1_KI270759v1_alt 216160 24 + 425601 ---TGGTCCAtttttc--ttttt----ttttgt s panTro4.chr1 224970766 18 + 228333871 ---TGGTCCAtttttc--ttttt---------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226332763 28 - 229942017 ---TGGTCCAtttttc--tttttttcttttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221498 24 - 143122389 ---TGGTCCAtttttc--ttttt----tttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16932379 21 - 229590362 ---TGGTACAtttttc-----tt----tttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223695226 23 - 227556264 ---TGGTCCAtttttc---tttt----tttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16745784 26 - 220367699 ---tggtccatttttcttttttt----tttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82542582 22 + 85787240 ---TGGTACAtttttc----ttt----tttttt i chlSab2.chr25 C 0 C 0 s mm10.chr1 178808144 21 + 195471971 CTATGTCCTCTTTCTC--TTTGT---------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36373483 65 + 80974532 I e calJac3.chr19 14225717 0 - 49578535 C a score=140554.000000 s hg38.chr1_KI270759v1_alt 216184 65 + 425601 tttgagatggagtcttgctctgtcacccaggctggatggagtgcagtggtgcgatctcggctcac s panTro4.chr1 224970784 58 + 228333871 ---gagatggattctcgctctgtcacccaggctgga----gtgcagtggtgcgatcttggctcac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226332791 61 - 229942017 tttgagatggagtcttgctctgtcacccaggctgga----gtgcagtggtgcgatctcggctcac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221522 61 - 143122389 tttgagacggagtcttgctttgtcacccaggctgga----gtgcagtggcacgatcttgattcac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16932400 61 - 229590362 tttgagacggagtctcactctgtcgcccaggctgga----gtgcagtggcgcgatctcggctcac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223695249 61 - 227556264 tttgagacggagtctcactctgtcgcccaggctgga----gtgcagtggcgcgatctcggctcac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16745810 61 - 220367699 tttgagacggagtctcactctgtcgcccaggctgga----gtgcagtggcgcgatctctgctcac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82542604 61 + 85787240 tttgagatggagtctcgctctgtcgcccaggctgga----gtgcagtggcgcgatctcggctcac i chlSab2.chr25 C 0 I 1301 e mm10.chr1 178808165 0 + 195471971 C e canFam3.chr7 36373483 65 + 80974532 I e calJac3.chr19 14225717 0 - 49578535 C a score=31859.000000 s hg38.chr1_KI270759v1_alt 216249 18 + 425601 tgcaagctctgcctcccg s panTro4.chr1 224970842 18 + 228333871 tgcaagctctgcctccca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226332852 18 - 229942017 tgcaagctctgcctccta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221583 18 - 143122389 tgcaagctctgcctcctg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16932461 18 - 229590362 tgcaagccccgcctcccg i rheMac3.chr1 C 0 M 172 s macFas5.chr1 223695310 18 - 227556264 tgcaagctccgcctcccg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16745871 18 - 220367699 tgcaagctccgcctcccg i papAnu2.chr1 C 0 C 0 e mm10.chr1 178808165 0 + 195471971 C e canFam3.chr7 36373483 65 + 80974532 I e calJac3.chr19 14225717 0 - 49578535 C e chlSab2.chr25 82542665 1301 + 85787240 I a score=93317.000000 s hg38.chr1_KI270759v1_alt 216267 77 + 425601 tgttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcacccgccaccatgcccggctaatttt s panTro4.chr1 224970860 77 + 228333871 tgttcatgccattctcctgcctcagcctcccaagtagctgggactacaggcacccgccaccatgcccggctaatttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226332870 77 - 229942017 tgttcactccattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccacgcccggctaatttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221601 77 - 143122389 tgttcactccattctcctgcctcagccttccaagtagctgggactacagacgcctgccaccacgcctggctaatttt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223695328 77 - 227556264 ggttcatgccattctcctgcctcagcctcctgggtagctgggactacaggtgcccaccacctcgcctggctagtttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16745889 77 - 220367699 ggttcacgccattctcctgcctcagcctcctgggtagctgggactacaggtgcccaccacctcgcctggctagtttt i papAnu2.chr1 C 0 C 0 e mm10.chr1 178808165 0 + 195471971 C e canFam3.chr7 36373483 65 + 80974532 I e calJac3.chr19 14225717 0 - 49578535 C e rheMac3.chr1 16932479 172 - 229590362 M e chlSab2.chr25 82542665 1301 + 85787240 I a score=22578.000000 s hg38.chr1_KI270759v1_alt 216344 12 + 425601 ttgtatttttag s panTro4.chr1 224970937 12 + 228333871 ttgtatttttag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226332947 12 - 229942017 ttgtatttttag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221678 12 - 143122389 ttgtatttttgg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16932657 12 - 229590362 ttgtatttttag i rheMac3.chr1 M 172 C 0 s macFas5.chr1 223695405 12 - 227556264 ttgtatttttag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16745966 12 - 220367699 ttgtatttttag i papAnu2.chr1 C 0 C 0 e mm10.chr1 178808165 0 + 195471971 C e canFam3.chr7 36373483 65 + 80974532 I e calJac3.chr19 14225717 0 - 49578535 C e chlSab2.chr25 82542665 1301 + 85787240 I a score=236651.000000 s hg38.chr1_KI270759v1_alt 216356 116 + 425601 tagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatctgcccgccttggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggcc s panTro4.chr1 224970949 116 + 228333871 tagagacaaggtttcaccgtgttagccaggatggtctcgatctcccgacctcatgatctgcccgccttggcctcccaaagtgctgagattgcaggtgtgagccaccacacccagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226332959 116 - 229942017 tagagacaaggtttcaccgtgttagccaggatggtctcgatctcctgatcttgtgatctgcccgcctcggcctcccaaagtgctgggcttacaggtgtgcgccaccgcgcccagcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221690 116 - 143122389 tagagacgaggtttcaccgtgttagccaggatggtctcgatctcctgatcttgtgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16932669 105 - 229590362 tagagatggggtttcactgtgttagccaggattgtctcgatctcctgtcctcatgatctgcccgcctcggcctcccaaagtgctggaattacaggcgtgagcca-----------c i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223695417 105 - 227556264 tagagatggggtttcactgtgttagccaggattgtctcgatctcctgtcctcatgatccgcccgcctcggcctcccaaagtgctggaattacaggcgtgagcca-----------c i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16745978 105 - 220367699 tggagatggggtttcactgtgttagccaggattgtcttgatctcctgtcctcatgatccgcccgcctcagcctcccaaagtgctggaattacaggcgtgagcca-----------c i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82543966 116 + 85787240 tagagactgggtttcactgtgttagccaggattgtcttgatctcttgaccacgtgatccgcccgcctcatcctcccaaagtgctgggatgacaggtgtgagccaccgtgcccagGC i chlSab2.chr25 I 1301 C 0 e mm10.chr1 178808165 0 + 195471971 C e canFam3.chr7 36373483 65 + 80974532 I e calJac3.chr19 14225717 0 - 49578535 C a score=129376.000000 s hg38.chr1_KI270759v1_alt 216472 48 + 425601 TGGTCCATTTTTCATCTTGACCATGGACCACGCTGGTAGATGCCTGGG s panTro4.chr1 224971065 48 + 228333871 TGGTCCATTTTTCATCTTGACCATGGACCACGCTGGTAGATGCCTGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226333075 48 - 229942017 TGGTCCATTTTTCATGTTGACTATGGCCCGTGCTGGTAGATGCCTGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221806 48 - 143122389 TGGTCCATTTTTCATCTTGACCATGGACCATGCTGGTAGATGCCTGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16932774 48 - 229590362 tgGTCCATTTTTCATCTTGACCGTGTACCATGCTGGTAGACGCCTGGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223695522 48 - 227556264 tgGTCCATTTTTCATCTTGACCGTGTACCATGCTGGTAGACGCCTGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16746083 48 - 220367699 tggtgCATTTTTCATCTTGACCGTGTACCATGCTGGTAGACGCCTGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82544082 48 + 85787240 TGGTCCTTTTTTCATCTTGACCGTGTACCATGCTGGTAGACACCTGGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14225717 48 - 49578535 TGGTCGGTTTCTCATGCTGACCATGGAACACCCTGGTAGGTGCCTGGT i calJac3.chr19 C 0 C 0 e mm10.chr1 178808165 0 + 195471971 C e canFam3.chr7 36373483 65 + 80974532 I a score=1836991.000000 s hg38.chr1_KI270759v1_alt 216520 501 + 425601 GG-CATGAGGGACATAGCAATCAGGCTCTGTCAGCCTTTGTGACCAGC----ACAACTTATTTCCAGTGCATTAAAGAAAATGATACTGCCTATGCCCAATTTAGA-TGTGGGCCAG------CTGTGTTAGTTAGCTTAACACAGCATTTTGTTTT-GCATATGTATTGATTTTGCGCACATGCTCTCTAAGTG-CCTCAGAACACTGCCTACAGCATCCTGGTGAGGTTGACAATCAGTTGTCCTGTCCCTGTTCA-TCTGGCATGGGGACACACTGTCAGAGGAGGAACTACCAAGTAAGTAATTGCCTCCAGCACACAAAAACTGCAGACACATGGTTGACATAAGAATCTAGTTTCAGCTGG-TGGTTTTCAGGGCAAAGCAACTGCACTAACAGGAGATTTCCCTGACAGCTGATTTAAGGCTGTGGA----AGACCCCAGTTTATCAGCTCAAATTGAGAATGTCCTTTTT-T------------GACTAGAAACGAGACCCTCCCAGCCAACTGCACAACCAAAAC s panTro4.chr1 224971113 515 + 228333871 GGGCATGAGGGACATAGCCATCAGGCTCTATCAGCCTTTGTGACCAGC----ACAACTTATTTCCAGTGCATCAAAGAAAATGATACTGCCTATGCCCAATTTAGA-TGTGGGCCAG------CTGTGTTAGTTAGCTTAACACAGCATTTTGTTTTTGCATATGTATTGATTTTGCGCACATGCTCTCTAAGTG-CCTCAGAACACTGCCTACAGCATCCTGGTGAGGTTGACAATCAGTTGTCCTGTCCCTGTTCA-TCTGGCGTGAGGACACACTGTCAGAGGAGGAACTACCAAGTAAGTGATTGCCTCCAGCACACAAAAACTGCAGACACATGGTTGACATAAGAATCTAGTTTCAGCTGG-TGGTTTTCAGGGCAAAGCAACTGCACTAACAGGAGATTTCCCTGACAGCTGATTTAAGGCTGTGGA----AGACCCCAGTTTATCAGCTCAAATTGAGAATGTCCTTTTT-TCAGTCCTTTTTTGGCTAGAAACGAGATCCTCCCAGCCAACTGCACAACCAAAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226333123 500 - 229942017 TGGCATAAGGGACATAGCAGTCAGGCTCTATCAGCCTTTGTGACCAGC----ACAACTTATTTCCAGTGCATTAAAGAAAATGATACTGCCTATGCCCAATTTAGATTGTGGGCCAG------CTGTGTTAGTTAGCTTAACACAGCATTTTGTTTTTGCATACGTATTGATTTTGCGCACATGCTCTCTAAGTG-CCTCAGAACACTGCCTACAGCATCCTGGTGAGGTTGACAATCAGTTGTCCTGTCCCCGTTCA-TCTGGCATGAGGACAC---------------ACTACCAAGTAAGTAATTGCCTCCAGCACACAAAAACTGCAGACACATGGTTGACATAAGAATCTAGTTTCAGCTGG-TAGTTTTCAGGGCAAAGCAACTGCACTAAGAGGAGATTTCCCTGACAGCTGATTT-AGGCTGTGGA----AGACCCCAATTTATCAGCTCAAATTCAGAATGTCCTTTTT-TCAGTCCTTTTTTAGCTAGAAACAAGACCCTCCCAGCCAACTGCACAACCAGAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140221854 516 - 143122389 TGGCGTGAGGGACACAGCAGTCAGGCTCTATCAGCCTTTATGACCAGC----ACAACTTATTTCCAGTGCATTAAAGAAAATGATACTGCCTATGCCCAATTTAGATTGTGGGCCAG------CTGTGTTAGTTAGCTTACCACAGCATTTTGTTTTTGCATATGTATTGATTTTGCACACATGCTCTCTAAGTG-CCTCAGAACACTGCCTACAGCATCCTGGTGAGGTTGACAATCAGTTGTCCTGTCCCCGTTCA-TCTGGCATGAGGACACACTGTCAGAGGAGGAACTACCAAGTAAGTAATTGCCTCCAGCACACAAAAACTGCAGACACATGGTTGACGTAAGAATCTAGTTTCAGCTGG-TGGTTTTCAGGGCAGAGCAACTGCACTAACAGGAGATTTCCCTGACAGCTGATTTAAGGCTGTGGA----AGACCCCAATTTATCAGCTCAAATTGAGAACGTCCTTTTT-TCCATCCTTTTTTAGGTAGAAACGAGACCCTCCCAGCCAACTGCACAAGCAAAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16932822 520 - 229590362 TGGTATGAGAGACATAGCAGTCAGGCTCTGTCAGCCTTTGTGACCAGCACAGACAACTTATTTCCGGTGCATTAAGGAAAATGATACTGCCTGTGCGCAATTTAGATTGTGGGCCAG------CTGTGTTAGTTGGCTTAACACAGCATTTTGTTTTTGCATATGTATTGATTTTGCGCACACGCTCTCTAAGTG-CCTCAGAACACAGCCTACAGCATCCTGGTGAGGTTGACAATCAGTCGTCCTGTCCCTGTTCA-TCTGGCATGAGGACACACTGTCAGAGGAGGAACTACAAAGTAAGTAATTGCCTCCAGCACACAAAAACTGCAGACACATGGTTGACATAAGAATCTAGTTTCAGCTGG-CGGTTTTCAGGGCAAAGTAACTGCACTAACAGGAGATTTCCCTGACAGCTGATTTAAGGCTGTGGA----AGACCCCAATTTATCAGCCCAAATTGAGAATGTCCTTTTT-TCAGTCCTTTCTTAGCTAGAAATGAGACCCTCTCGGCCAACTGCACAACCAAAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223695570 520 - 227556264 TGGTGTGAGAGACATAGCAGTCAGGCTCTATCAGCCTTTGTGACCAGCACAGACAACTTATTTCCGGTGCATTAAGGAAAATGATACTGCCTGTGCGCAATTTAGATTGTGGGCCAG------CTGTGTTAGTTGGCTTAACACAGCATTTTGTTTTTGCATATGTATTGATTTTGCGCACACGCTCTCTAAGTG-CCTCAGAACACAGCCTACAGCATCCTGGTGAGGTTGACAATCAGTCGTCCTGTCCCTGTTCA-TCTGGCATGAGGACACACTGTCAGAGGAGGAACTACAAAGTAAGTAATTGCCTCCAGCACACAAAAACTGCAGACACATGGTTGACATAAGAATCTAGTTTCAGCTGG-CGGTTTTCAGGGCAAAGTAACTGCACTAACAGGAGATTTCCCTGACAGCTGATTTAAGGCTGTGGA----AGACCCCAATTTATCAGCCCAAATTGAGAATGTCCTTTTT-TCAGTCCTTTCTTAGCTAGAAATGAGACCCTCTCGGCCAACTGCACAACCAAAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16746131 520 - 220367699 TGGTGTGAGAGACATAGCAGTCAGGCTCTATCAGCCTTTGTGACCAGCACAGACAACTTATTTCCGGTGCATTAAGGAAAATGATACTGCCTGTGCGCAATTTAGATTGTGGGCCAG------CTGTGTTAGTTGGCTTAACACAGcattttgtttttgcatatgtATTGATTTTGCGCACACGCTCTCTAAGTG-CCTCAGAACACAGCCTACAGCATCCTGGTGAGGTTGACAATCAGTCGTCCTGTCCCTGTTCA-TCTGGCATGAGGACACACTGTCAGAGGAGAAACTACGAAGTAAGTAATTGCCTCCAGCACACAAAAACTGCAGACACATGGTTGACATAAGAATCTAGTTTCAGCTGG-CGGTTTTCAGGGCAAAGTAACTGCACTAACAGGAGATTTCCCTGACAGCTGATTTAAGGCTGTGGA----AGACCCCAATTTATCAGCCCAAATTGAGAATGTCCTTTTT-TCAGTCCTTTCTTAGCTAGAAACGAGACCCTCTCGGCCAACTGCACAAACAAAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82544130 515 + 85787240 TGGTGTGAGAGACATAGCAGTCAGGCTCTATCAGCCTTTGTGACCAGCACAGACAACTTATTTCCGGTGCATTAAGGAAAATGATACTGCCTGTGCGCAATTTAGATTGTGGGCCAG------CTGTGTTAGTTGGCTTAACACAGCATTTTGTTTTTGCATATGTATTGATTTTGCGCACACGCTCTCTAAGTG-CCTCAGAACACAGCCTACAGCATCCTGGTGAGGTTGACAATCAGTCGTCCTGTCCCTGTTCA-TCTGGCATGAGGACACACTGTCAGAGGAGGAACTACAAAGTAAGTAATTGCCTCCAGCACACAAAAACTGCAGACACATGGTTGACATAAGAATCTAGTTTCAGCTGG-CGGTTTTCAGGGCAAAGTAACTGCACTAACAGGAGATTTCCCTGACAGC-----TAAGGCTGTAGA----AGACCCCAATTTATCAGCCCAAATTGAGAATGTCCTTTTT-TCAGTCCTTTCTTAGCTAGAAACGAGACCCTCTCGGCCAACTGCACAACCAAAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14225765 518 - 49578535 TGGTGTAAGAGACGTAGCAGTCAGGATCTATCAGCCTTTGTGACCAGCACGGACAACTTACTTCCAGTGCATTAAGGAAAACGATACTGCCCATGCCCAATTTAGATTGTGGGCCAG------CTGTGTTA----GCTTAACACAGCATTTGGTTTTTGCATATGTGTTTATTTTGCACACGTGCTCTCTAAGTG-TCTCAGAACA-TGCCTACAGCATCCTGGTGAGGTTGACAATCAGTTGACCCGTCCCTGTTCA-TCTGGCATGAGGACACACTGTCAGAGGACGAACTACCCAGTCAGTAATTGCCTCCAGCACACAAAAACTGCAGACACGTGTTTGACATAAGAATGTAGTTTCAGCTGG-TGGTTTTCAGGGCAAAGCAACTGCACTAACAGGAGATTTGCCTGACAGCTGATTTAAGGCTGTATAAGACAGACCCCAATTTATCAGTTCAAATTGAGAATGCCCTTTTT-TCAGT-CTTTCTTTGCTACAGATGAGACCCTCCCAGCCAACTGCACAACCAAAAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178808165 473 + 195471971 GACCATGAGAGGTATGGTGGGAAGACTTTATCAGCCTTCATGACCAGTGTGGAAAACTTATCTTCAGTGGACCATGGAAAGTGGTGCTGGCT----CAAATTCAG--TGGGGACCAG------CTGTGTCAGTTTCATTAGTACAAGGTTTTGGTCTTGTGTGTGCATTGATTTTGCATA-ATTCTCTCTACGTGCCCCCAAGACACAGACTA---TTTGAAGTTGTAGTAGACAATTAGTTTTCTTTTCCCTGGACAGTCTTGTCTGAGGATGCGTTGTCAGAGAAGAAGC--CAGAGTCAGTGATCACCCCTGGTGAGTCAAGGGTAGGGACACATCACTGACCTCTTGATCT--------------GGTTTTTGGAGTGAAATTAAGGATGTGAGCAGAAATCTTCATGGCATCTAGTTCAA-GCTGGAGA----TGGCTGCAGTTTACCAGTTAAAAAACCAAAGG-----------------------ACAAAAAACAACACCCCCCCACACACACACAC-ACAAAAAC i mm10.chr1 C 0 I 517 s canFam3.chr7 36373548 484 + 80974532 -GGTATGAGAAACATGGTGGTGAG-TTGTCTCAGCCTGTGTG--CAGCACAGACCACTTATTTGTAGGACATTAAGGAAAGCGATACTGTCTACACCCAATTTCAGTTGGGGGCCAGTTTAAACTGTGTTAGTTCGCTTAACACAGCATTTTGGCTTTGTATATGTATTTCTTTGGCACACCCGGTCTCTGAGTGCCCCCAGGACACTGCCCAAAGTGTGTTGGTGAGAGTGATAATTGGTTGTTCTGACCCTGATCATTCCTACATGAGGACACATTGTCAG--------------AGTAAGTAATTGCCTCCAGCACACAAAGGCTGCAGACACTTGGTTGACAGAAGAATCTAGTTTCAACTGGTTGGTCTTCA------------------------AGATTTTCCTAACATCTGGTTTAA----GTAGG----AAACCCCTGTTCATTGGCTCAGATTGAGAATGTCATTTTTCTCTCACCTTTCTTAGCCATCAATATGGCCCTCCCAGCCAACAACACAACCAAAAC i canFam3.chr7 I 65 C 0 a score=100377.000000 s hg38.chr1_KI270759v1_alt 217021 32 + 425601 TTATATTCAGGAT-------------------------------------------------GTCCAGGACCTGAAACTGA s panTro4.chr1 224971628 32 + 228333871 TTATATTCAGGAT-------------------------------------------------GTCCAGGACCTGAAACTGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226333623 32 - 229942017 TTATATTCAGGAT-------------------------------------------------GTCCAGGACCTGAAACTGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140222370 32 - 143122389 TGATATTCAGGAT-------------------------------------------------GTCCAGGTCCTGAAACTGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16933342 32 - 229590362 TTATATTCAGGAT-------------------------------------------------GTCCAGGACCTGAAACTGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223696090 32 - 227556264 TTATATTCAGGAT-------------------------------------------------GTCCAGAACCTGAAACTGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16746651 32 - 220367699 TTATATTCAGGAT-------------------------------------------------GTCCAGGACCTGAAACTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82544645 32 + 85787240 TTACATTCAGGAT-------------------------------------------------GTCCAGGACCTGAAACTGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14226283 32 - 49578535 TTATATTCAGGAT-------------------------------------------------GTTCAGGACCTGAAACTGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36374032 81 + 80974532 TCACATTCAAGATGCCAGGAACTgggcagcctgggtggctcagcggtttagcgcagccttcagcccagggcatgatcctgg i canFam3.chr7 C 0 I 139 e mm10.chr1 178808638 517 + 195471971 I a score=277622.000000 s hg38.chr1_KI270759v1_alt 217053 93 + 425601 CATGGGAGTCAATATTCTACAGCCAGTTGTGGTGTCGACAGGGTCTG--GGGGAAATCTTCAGAGCTGACTTGTGATGTAGCAGGGCTTACAGCA s panTro4.chr1 224971660 93 + 228333871 CATGGGAGTCAATATTCTACAGCCAGTTGTGGTGTTGACAGTGTCTG--GGGGAAATCTTCAGAGCTGACTTGTGATGCAGCAGGGCTTACAGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226333655 93 - 229942017 CATGGGAGTCAATATGCTACAGCCAGTTGTGGTGGTGTCAGTGTCTG--GGGGAAATCTTCAGAGCTGACTCGTGATGCAGCAGGGCTTACAGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140222402 93 - 143122389 CATGGGAGTCAATATCCTACAGCCAGTTGTGGTGTTGTCAGTGTCTG--GGGGAAATCTTCAGAGCTGACTCGTGATGCAGCAGGGCTTACAGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16933374 92 - 229590362 CATGGGAGTCAATGTCCTACAGCCAGTTGTGATATTGACAGTGTGT---GGGGGAATCTTCAGAGCTGACTCGCGATGCAGTAGGGCTTAGAGCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223696122 92 - 227556264 CATGGGAGTCAATGTCCTACAGCCAGTTGTGATATTGACAGTGTGT---GGGGGAATCTTCAGAGCTGACTCGCGATGCAGTAGGGCTTAGAGCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16746683 93 - 220367699 CATGGGAGTCAATGTCCTACAGCCAGTTGTGATATTGACAGTGTGTG--GGGGGAATCTTCAGAGCTGACTCGCGATGCAGTAGGGCTTAGAGCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82544677 93 + 85787240 CATGGGAGTCAATGTCCTACAGCCAGTTGTGATATTGACAGTGTGTG--GGGGGAATCTTTGGAGCTGACTCGCGATGCAGCAGGGCCTAGAGCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14226315 93 - 49578535 CATGGGAGTCAATATCCCAGAGCTGGCTGTGGTATTGACAATGTCTG--GTGGGAATCCTCAGAGCTGACTCACGATGCAGCAGGGCGTAGAGCA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36374252 94 + 80974532 CATCAGAGTCAACATCCTTTAG-TGGATGCAATGTTGAGAAGCCCTGATGAGGCAAGGTTTACAGCTGAGTCAGAATCCAGCAGGGCCTGAAGCA i canFam3.chr7 I 139 C 0 e mm10.chr1 178808638 517 + 195471971 I a score=572181.000000 s hg38.chr1_KI270759v1_alt 217146 166 + 425601 AAGGCATCCCTTTCACCTTGCTCTTTAGGATTCATATTCTAAGAAGCTGCTAAGAAAAAATGTCTAAACGGAGACAC--TTAGGATATAGTTTTCATATTAATGTTTTATTTTAACaataatgggagcaaacacctaccaggtgtttactctgcgtcaggaac------tgttc-- s panTro4.chr1 224971753 166 + 228333871 AAGGCATCCCTTTCACCTTGCACTTTAGGATTCATATTCTAAGAAGCTGCTAAGAAAAAATGTCTAAACGGAGACAC--TTGGGATATAGTTTTCATATTAATGTTTTATTTTAACaataatgggagcaaacacctaccaggtgtttactctgcgtcaggaac------tgttc-- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226333748 162 - 229942017 AAGGCATCCCTTTCACCTTGCTCTTTAGG----ATATTCTACAAAGATGATAAGAAAAAATGTCTAAACGGAGACAC--TTAGGATATAGTTTTCATATTAATGTTTTATTGTAACaataatgggagcaaacacctaccaggtgtttactctgagtcaggaac------tgttc-- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140222495 172 - 143122389 AAGGCATCCCTTTCACCTTGCTCTTTAGGATTCATATTCTAAGAAGCTGACAAGAAAGAATGTCTAAAAAGAGACAC--TTGGGATATAGTTTTCATATTAATGTTTTATTATAACaataatgggagcaaacacctaccaggtgtttactctgaatcagaaacagaagatgttc-- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16933466 166 - 229590362 AAGGCATCCCTTTCACCTTGCTCTTTAGGACTCATATTCTAAGAAGCTGATAAGAAAGAACGTCTAAGAAGAGACAC--TTAGGATATAGTTTTCATATTAATGTTTTATTATAACaataatgggagcaaacacctaccgggtgtttactctgagtgaggaac------ggttc-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223696214 166 - 227556264 AAGGCATCCCTTTCACCTTGCTCTTTAGGACTCATATTCTAAGAAGCTGATAAGAAAGAACGTCTAAGAAGAGACAC--TTAGGATATAGTTTTCATATTAATGTTTTATTATAACaataatgggagcaaacacctaccgggtgtttactctgagtgaggaac------ggttc-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16746776 162 - 220367699 AAGGCATCCCTTTCACCTTGCTCTTTAGGACTCATATTCTAAGAAGCTGATAAGAAAGAACGTCTAAGAAGAGAC------AGGATATAGTTTtcatattaatgttttattataacaGTAATGGGAGCAAACACCTACTGGGTGTTTACTCTGAGTGAGGAAC------GGTTC-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82544770 166 + 85787240 AAGGCATCCCTTTCACCTTGCTCTTTAGGACTCATATTCTAAGAAGCTGATAAGAAAGAACGTCTAAGAAGAGACAC--TTAGGATACAGTTTTCATATTAATGTTTTATTATAACaataatgggagcaaacacctaccgggtgtttactctgagtgaggaac------ggttc-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14226408 163 - 49578535 AAAGCATCTCTTTGACCTTGCTCTTTAGGGTTCATATTTTAAGA---TGATAAGAAAGAATTTCTAAAAAGAGACTC--TTGGGATATAGTTTTCATATTCACATTTTATCATAACaataatgggagcaaacacctactgggtgtttactatgagtcaggaac------tgttc-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178809155 163 + 195471971 AAGGCGCCTATTTCAGCTCTCTGATTACAACTCATGTACTTAGAAGCTTCTGTGGGAGACTCTCCTAAA--ACACAC--TTAGGATATAGTACTCATACTGACATTTTATTAGCACAATAGCAATGACAAATGTTTGCTGGGTGTCT-CTCAGTGCCAGGACC------TGTCC-- i mm10.chr1 I 517 I 41 s canFam3.chr7 36374346 166 + 80974532 AAGACATGGTTTTCACCTTGCTTTTCACTGTTGATGTATTTAGAAGCTTGTAAGAAAGAATCTCTAAAAAGAAACACTTTTAAGACATGGTTTTCATATTAATAGTTAATTATAACAATAGTTGTAACAAAC----ACTGGGTATGTACTCTGGGGCAGGAAC------TAAGaga i canFam3.chr7 C 0 C 0 a score=1427300.000000 s hg38.chr1_KI270759v1_alt 217312 465 + 425601 -----------------------------------------------tgat--------------aatcttatttgaactttgcaacaattccatgaggc-tagct-actcttaccatcctgttttacagctggggaaactgtggcacaggaaagttaaggaacttgaccatggcc---acagagctctgagtgtcagaaagaagatttgaaaccacaca-gttggcttcgcatcctgtacgcttgactattTCTCTTTTCTGCCTCTCTTGGGAGAACTCTGAAATACTAAAGTACTATATTACTAAATAAATGCTTGCTAAAGCATTTATTTGGTCCCAT-ATTCTCAATTTACACAATTCTTTTCTCCAATCACATTTCATTTTAGACTTTATGAGCCCTGTTGAAGTCATCAGCTTAAAAGTGCCCTTG----AGCAA-TTCTCTACTCTAGATTGAGTTAAACAGAGT-ATCTGTAGATAATCTAGAATCACAGACAATACCtgtcttagttcctttgggtcgttataacaaaa s panTro4.chr1 224971919 465 + 228333871 -----------------------------------------------tgat--------------aatcttatttgaactttgcaacaattccatgaggc-tagct-actcttaccatcctgttttacagctggggagactgtggcacaggaaagttaaggaacttgaccatggcc---acagagctctgagtgtcagaaagaagatttgaaaccacaca-gttggcttcgcatcctgtacgcttgactattTCTCTTTTCTGCCTCTCTTGGGAGAACTCTGAAATACTAAAGTACTATATTACTAAATAAATGCTTGCTAAAGCATTTATTTGGTCCCAT-ATTCTCAATTTACACCATTCTTTTCTCCAGTCACATGTCATTTTAGACTTTATGAGCCCTGTTGAAATCATCAGCTTAAAAGTGCCCTTG----AGCAA-TTCTCTACTCTAGATTGAGTTAAACAGAGT-ATTTGTAGATAATCTAGAATCACAGACAATACCtgtcttagttcctttgggttgttataacaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226333910 463 - 229942017 -----------------------------------------------tgat--------------catcttatttgaacttcgcaacaattccatgaggc-tagcc-actcttacgatcctgttttacagctggggaaac--tggcacaggaaagttaaggaacttaaccatggcc---acagagctctgagtggcagaaataagatttgaaaccagaca-gttggcttcgcatcctgtacccttgaccattTCTCTTTTCTGCCTCTCTTGGGAGAACTCTGAAATACTAAAGTACTATATTACTAAATCAATGTTTGCTAAAGCATTTATTGGGTCCCAT-ATTCTCAATTTACACAATTCTTTTCTCCAGTTACATTTCATTTTAGACTTTATGAGCCCTGTCAAAATCATCAGCTTAAAAGTGCCCTTG----AGCAA-TTCTCTACTCTAGATTGAGTTAAACAGAGT-ATTTGTAGATAATCTAGAATCACAGACAATACCAgtcttagttcttttgggttgttataacaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140222667 465 - 143122389 -----------------------------------------------tgat--------------catcttatttgaactttgcaacaattccatgaggc-tagcc-tcccttaccatcctgtttcacagctggggaaactgtggcacaggaaagttaaggaacttgaccatggcc---acagagctctgagtggcagaaagaagatttgaaaccagaca-gttggcttcgcatcctgtacccttgaccattTCTCCCTTCTGCCTTTCTTGGGAGAAGTCTGAAATACCAGAGTACTATATTACTAAATAAATGTTTGCTAAAGCATTTATTGGGTGCCAT-ATTCTCAGTTTACACAATTCTTTTCTCCAGTCACATTTCATTTTAGACTTTATGAGCCCTGTTGAAATCATCAGCTTAAAAGTGCCCTTG----AGCCA-TTCTCTACTCGAGATTGAGTTAAACAGAGT-ATTTGTAGATAATCTAGAATCACAGACAATACCtgtcttagttcctttaggttgttataacaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16933632 459 - 229590362 -----------------------------------------------tgat--------------catcttatttgaacttcgcaacaattccatgaggc-tagcc-actcttaccaccctgttttacagctggggaaactgtggcgcaggatagttaaagaacttgaccatggcc---acagagctctgagtggcagaaaggagatttgaagataggta-attggcttcgcatcctgtacccttgactattTCTCTTTTCTGCCACTCTTGGGAGAACTCTGAAGTACTAAAGTAC--TGTTATT-AAT-AATGTTTGCTAAAGCATTTATTGCGTCCCAT-ATTCTCAATTT--ACAGTTCTTTTCTCCAGTCACATTTTATTTTCGACTTTATGAGCCCTGTTGAAATCATCAGCTTAAAAGTGCCCTTG----AGCAA-TTCTCTACTCTAGATTGAGTTAAACAGAGT-ATTTGTAGATAATCTCGAATCACAGACAATACCtgtcttagttcctttgggttgttacaacaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223696380 461 - 227556264 -----------------------------------------------tgat--------------catcttatttgaacttcgcaacaattccatgaggc-tagcc-actcttaccatcctgttttacagctggggaaactgtggcgcaggatagttaaagaacttgaccatggcc---acagagctctgagtggcagaaaggagatttgaagataggta-attggcttcgcatcctgtacccttgactatttctcttttctgccactctTGGGAGAACTCTGAAGTACTAAAGTAC--TGTTATT-AAT-AATGTTTGCTAAAGCATTTATTGCGTCCCAT-ATTCTCAATTTACACAGTTCTTTTCTCCAGTCACATTTTATTTTCGACTTTATGAGCCCTGTTGAAATCATCAGCTTAAAAGTGCCCTTG----AGCAA-TTCTCTACTCTAGATTGAGTTAAACAGAGT-ATTTGTAGATAATCTCGAATCACAGACAATACCtgtcttagttcctttgggttgttacaacaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16746938 462 - 220367699 -----------------------------------------------TGAT--------------CATCTTATTTGAACTTCGCAACAATTCCATGAGGC-TAGCC-ACTCTTACCATCCTGTtttacagctggggaaactgtGGCGCAGGATAGTTAAAGAACTTGACCATGGCC---GCAGAGCTCTGAGTGGCAGAAAGGAGATTTGAAGATAGGTA-ATTGGCTTCACATCCTGTACCCTTGactatttctcttttctgccaCTCTTGAGAGAACTCTGAAGTACTAAAGTAC--TGTTACTAAAT-AATGTTTGCTAAAGCATTTATTGCATCCCAT-ATTCTCAATTTACACAATTATTTTCTCCAGTCACATTTTATTTTCGACTTTATGAGCCCTGTTGAAATCATCAGCTTAAAAGTGCCCTTG----AGCAA-TTCTCTACTCTAGATTGAGTTAAACAGAGT-ATTTGTAGATAATCTCAAATCACAGACAATACCTGTCTTAGTTCCTTTGGGTTGTtacaacaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82544936 458 + 85787240 -----------------------------------------------tgat--------------catcttatttgaacttcgcaacaattccatgaggc-tagcc-actcttaccatcctgttttacagctggggaaactgcggcgcagga----taaagaacttgaccatggcc---acagagctctgagtggcagaaaggagatttgaagccagata-attggcttcgcatcctgtacccttgactattTCTCTTTTCTGCCTCTCTTGGGAGAACTCTGAAGTACTAAAGTAC--TGTTACTAAAT-AATGTTTGCTAAAGGATTTATTGCATCCCAT-ATTCTCAATTTACACAATTCTTTTCTCCAGTCACATTTTATTTTCGACTTTATGAGCCCTGTTGAAATCATCAGCTTAAAAGTGCCCTTG----AGCAA-TTCTCTACTCTAGATTGAGTTAAACAGAAT-ATTTGTAGATAATCTCGAATCACAGACAATACCtgtcttagttcctttgggttgttacaacaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14226571 473 - 49578535 -----------------------------------------------tgat--------------catcttatttgaactttgcaacaagtccatgaggt-tagcc-cctcttactatcccgctttacagctggggaaactgtggcactggaaggttaaggaacttgaccaaggccacaacagagctgtgagtgacagaaaggagatttgaagttaggca-gttggcttcagatcctgtgctcttgactaTGTCTCTTTTCTGCCTTTCTTGGGAGAACTCTGAAATCCTCAGGTACTATATTACTAAATAAATGTTTGCTAAAGCGTTTATTGGGTCCCATAATTCTCAATTTACACAATTCTTTTCTCCAATCACTTTTTATTTTAGACTCTATGAGCCCTGTTGAAATCATTACCCTAAAAATCCCCTTAGAATAGCAA-TCCTCTACTCTAGATTGAGTTAAACAGAGT-ATTTGTAGATAATCTGGAATCACAGACAATACCtgtcttagttcctttgggatgttttaacaaaa i calJac3.chr19 C 0 C 0 s canFam3.chr7 36374512 510 + 80974532 tgatagatagatagatagatagatagatagatagatagatagatagatgataagtagatagaGTGTATGTAGtttaaatctcactac---tctgagaagtgtagctaactcgta-tatcttgtttcatggctgacgaaaccgtggcacagcaaagttcaggcacttgaccaaagtc---acagagctgtgagtggcagaaagtagattt-aacccaaacacctcggctccacaggctgtactc--AGCTCTTTCTCTTTT----TGCTTCTGGAGGGACTCTGAAATACTGAAGCTTTGTAACACTAAATAAATGCTCTTTGAAGCCTGTGCTGATGCCTAA-GCTTCCTTCATGTAC----CTCTTCCCCATCCACACTTTACTGTAGAGTCCTGGAGGCCCATCGAAATCCTGGGCTAGAAAGCACCCTTC----AGTGACTTTTCTAGTCTGGATTGAATCTAGTGAATTCATTGGCGTGTCTTCTAGAATCGCAG-CAACA-----CTTAACTACTTGGGACCCACATAACTGAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178809318 41 + 195471971 I a score=1032918.000000 s hg38.chr1_KI270759v1_alt 217777 349 + 425601 ataccatagtctaaatttataaacaacggaagtttatttt-gtacagttctagaggccgagaagttaaagatcaagagaccatcaggttcagtgtctggtaagggcccactctggttcacagatggtgccttctcgctgtgtcttcacatggcagaaggggcaaacaagctccctgggctccttttt-taagggcactaatcccattcaccagggctccaccctcatgacctaatcaccttct-aaatgccccatctccaaataccatcatcttgtgggttaggatttcaacttatgaatttaaagagggacataaacattcagaccacagcaACATCTAA-TTTTGAGCCAC s panTro4.chr1 224972384 349 + 228333871 ataccatagtctaaatttataaacaacggaagtttatttt-gtacagttctagaggccgagaagttaaagatcaagagaccatcaggttcagtgtctggtaagggcccactctggttcacagatggtgccttctcgctgtgtcttcacatggcagaaggggcaaacaagctccctgggctccttttt-taagggcactaatcccattcaccagggctccaccctcatgacctaatcaccttct-aaatgccccatctccaaataccattatcttgtgggttaggatttcaacttatgaatttaaagagggacataaacattcagaccacagcaACATCTAA-TTTTGAGCCAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226334373 351 - 229942017 ataccatagtctaaatttataaacaacggaagtttattttggtacagttctagaggccgagaagttaaagatcaagagaccatcaggttcagtgtctggtaagggcccactctggttcatagatggtgccttctcgctgtgtcttcacatggcagaaggggcaaacaagctccctgggctccttttt-taagggcactaatcccattcaccagggctccacccttatgacctaatcacctcctaaaatgccccatctccaaataccatcatcttgtgggttaggatttcaacttatgaatttaaagagggacgtaaacattcagaccacagcaACATCTAA-TTTTGACCCAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140223132 349 - 143122389 ataccatagtctaaatttataaaccacagaagtttatttt-gtacagttctagaggccgagaagttaaagatcaagagaccatcaggttcagtgtcggctaaggacccactctggttcatagatggtaacttcttgctgtgtcttcacatggcagaaggggcaaacaagctccctgggctccttttt-taagggcactaatcccattcaccagggctccaccctcatgacctaatcaccttct-aaatgccccgtctccaaataccatcatcttgtgggttaggatttcaacttatgaatttaaagagggacataaacattcagaccgcagcaACATCTAA-TTTTGACCCAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16934091 351 - 229590362 ataccatagtctaaatttataaacaacagaagtgtatttt-gtacagttctagaggccgagaagttaaagatcaagagaacatcaggttccgtgtctggtaagggcccgctctggttcagagatggtaccttctcgctgtgtcttcacatggcagaaggggcagacaagctccctgggctcctttttgtaagggcactaatcccattcaccagggctccaccctcatgacctaatcacctcct-aaaatgcccatctccaaataccatcatcttgtgggttaggatttcaacttatgaattcagagagggacataagcattcagaccatagcaACATCTAATTTTTGACCCAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223696841 351 - 227556264 ataccatagtctaaatttacaaacaacagaagtgtatttt-gtacagttctagaggccgagaagttaaagatcaagagaacatcaggttccgtgtctggtaagggcccgctccggttcagagatggtaccttctcgctgtgtcttcacatggcagaaggggcagacaagctccctgggctcctttttgtaagggcactaatcccattcaccagggctccaccctcatgacctaatcacctcct-aaaatgcccatctccaaataccatcatcttgtgggttaggatttcaacttatgaattcagagagggacataagcattcagaccatagcaACATCTAATTTTTGACCCAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16747400 350 - 220367699 ataccatagtctaaatttataaacaacagaagtctATTTT-GTACAGTTCTAGAGGCCGAGAAGTTAAAGATCAAGAGAACATCAGGTTcggtgtctggtaagggcccgCTCTGGTTCAGAGATGGTACCTTCtcgctgtgtcttcacatggcagaagggacagaCAAGCTCCCTGGGctcctttttataagggcactaatcccattcaccagggctccaccctcatgacctaatcacctcct-aaaatgcccatctccaaataccatcatctTGTGGATTAGGATTTCAACTTATGAATTCAGagagggacataaacattcagaccatagcaacatCTAA-TTTTGACCCAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82545394 350 + 85787240 ataccgtagtctaaatttataaacaacagaagtctatttt-gtacagttctagaggccgagaagttaaagatcaagagaatatcaggttcggtgtctggtaagggcccactctggttcatagatggtaccttctcgttgtgtcttcacatggcagaaggggcagacaagctccctgggctcctttttataaggacactaatcccattcaccagggctccaccctcatgacctaatcacctcct-aaaatgcccatctccaaataccatcatcttgtgggttaggatttcaacttatgaattcagagagggacataaacattcagaccatagcaACATCTAA-TTTTGACCCAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14227044 333 - 49578535 aggccatagtctaaatttatgaacaacagaagtttatttt-gcacagttctagaggccgagaagttacagatcaagacaccatcaggttcagtgtctggtaagggcccactctggttcatagatggtgctttcttgctgt------acatggcag-aggagcaaacaagctccctgggttcttttttataatggcactaattcagttcatcagggccccaccctt--------atcacctcct-aaaatgcccatctacagataccatcatcttgagggttaggatttcaacttacgaatttagagggcaacataaacattccgaccacagcaACATCTAA-TTTTGACCC-- i calJac3.chr19 C 0 C 0 e mm10.chr1 178809318 41 + 195471971 I e canFam3.chr7 36375022 0 + 80974532 C a score=352584.000000 s hg38.chr1_KI270759v1_alt 218126 111 + 425601 CTAACTTTGAAAGAACAAGGATTGATTAATCCAATGTCAGCATACAG-TATACCATTAGATGTGAGCCCCTCTTGGCAAACTTGATAAAAGTGTGAG---AAAAAAATTACCTAG s panTro4.chr1 224972733 111 + 228333871 CTAACTTTGAAAGAACAAGGATTGATTAATCCAATGTCAGCATACAG-TATACCATTAGATGTGAGCCCCTCTTAGCAAACTTGATAAAAGTGTGAG---AAAAAAATTACCTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226334724 111 - 229942017 CTAACTTTGAAAGAACAAGGATTGATTAATCCAATGTCAGCATACAG-TATACCATTAGATGTGAGCTCCTCTTAGCAAACTTGATAAAAGTGTGAG---AAAAAAATCACCTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140223481 112 - 143122389 CTAACTTTGAAAGAACAAGGATTGATTAATCCAATGTCAGCATACAGTTATACCATTAGACATGAGCTCCTCTTAGCAAACTTGATAAAAGTGTGAG---AAAAAAATTACCTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16934442 109 - 229590362 CTAACTTTGAAAGAACAAGGATTGATTAATCCAATGTCAGCATACAG-TATTCCATTAGATGTGAGCTCCTCTTAGC-AACTTGATAAAAGTGTGAG----AAAAAATCACCTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223697192 109 - 227556264 CTAACTTTGAAAGAACAAGGATTGATTAATCCAATGTCAGCATACAG-TATTCCATTAGATGTGAGCTCCTCTTAGC-AACTTGATAAAAGTGTGAG----AAAAAATCACCTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16747750 110 - 220367699 CTAACTTTGAAAGAACAAGGATTGATTAATCCAATGTCAGCATACAG-TATTCCATTAGATGTGAGCTCCTCTTAGCAAACTTGATAAAAGTGTGAG----AAAAAATCACCTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82545744 110 + 85787240 CTAACTTTGAAAGAACAAGGATTGATTAATCCAATGTCAGCATAGAG-TATTCCATTAGATGTGAGCTCCTCTTAGCAAACTTGATAAAAGTGTGAG----AAAAAATCACCTAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14227377 107 - 49578535 --AACTTTGAAAGAACAAGGATTGACTAATCCAGTGTTA-CATATAG-TGTA-CGTTAGAGGTGAGCGCCTCTTACCAAACTTGATAAAAGCAAGAG---AAAATAGTCACCTCG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36375022 108 + 80974532 CTGACTTTGAAAAA------ATGGACTAATACAACATTATCCTATGG-TATGACCTTGGAGGTGAGCTCCCCTTAACAACCTTGATAAAAGTAGAAGCAAAAAAAAATCACCCAg i canFam3.chr7 C 0 I 126 e mm10.chr1 178809318 41 + 195471971 I a score=1568098.000000 s hg38.chr1_KI270759v1_alt 218237 544 + 425601 AAGACTAATAAATA-CAGAATAGTCACATATAATTTCTGTTTAAAGATTTATACCTTACCAATTTCCCCAAAATGATTTAACACAACTCATTAAATATTTGTAAAATAATTTAAATCTTAAAATATATATTGGGAACCAGTTAGGAGGAGAGAGAAAAAGACACCGGTTCCTAGACCAGCTTGGTTATTGTACTTGGACATTTCTTAGGCTCTGAATTTTATGGACGCTAAGGCAAATGGATCACAAAGGAGTAAAAGATAGGGGAAGGGAACAAAAGcatttagtgtgctcccactgtgtgcagatcattctgttggccactttcccataccttacgccctt--tattctcacaacagacccttgaggtagttaccgttattttcatccacatcaaagtatgtggcagaggcaggatttgaaccaagcctatttgactccaaagcctgtatgta-ttttttt-actAGGTTTAGGTTTTATTATTCTTACCCAATAAAGTG--ACATATGATTTGTCTGGAGATACCTAGTCTTCCTTTGAGGATTT---TTT s panTro4.chr1 224972844 545 + 228333871 AAGACTAATAAATA-CAGAATAGTCACATATAATTTCTGTTTAAAGATTTATACCTTACCAATTTCCCCAAAATGATTTAACACAACTCattaaatatttgtaaaataaattaaatcttaaaatatatattGGGAACCAGTTAGGAGGAGAGAGAAAAAGACACCAGTTCCTAGACCAGCTTGGTTATTGTACTTGGACATTTCTTAGGCTCTGAATTTTATGGACACTAAGGCAAATGGATCACAAAGGAGTAAAAGATAGGGGAAGGGAACAAAAGcatttagtgtgctctcactgtgtgcagatcattctattggccactttcccataccttatgccctg--tattctcacaacagacccttgaggtagttaccattattttcacccacatcaaagtatgtggcagaggcggcatttgaaccaagcctatttgactccaaagcctgtatgta-ttttttttactAGGTTTAGGTTTTATTATTCTTACCCAATAAAGTG--ACATATGATTTGTCTGGAGATACCTAGTCTTCCTTTGAGGATTT---TTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226334835 548 - 229942017 AAGACTAATAAATA-CAGAATAGTCACATATAATTTCTGTTTAAAGATTTACACCTTACCAATTTTCCCGAAATGATTTAACACAACTCattaaatatttgtaaaataaattaaatcttaaaatatatattGGGAACCAGTTAGGGGGAGAGAGAAAAAGACACCAGTTCCTAGACCAACTTGGTTATTGTACTTGGACATTTCTTAGGCTCTGAATTTTATGGATGCTAAGGCAAATGGATTACAAAGGAGTAAAAGATAGGGGAAGGGAACAAAAGcatttactgtgctctcattgtatgcagatcattctgttggccactttcccgtaccttacgccctt--tattctcacaacagacccttgaggtagttaccattattttcatccacatcaaagtaagtggcagaggcaggatttaaaccaagcctatttgactccaaagcctgtatgta-ttttttttactaggTTTAGGTGTTATTATTCTTACCCAATAAAGTG--ACATATGATTTGTCTGGAGATACCTAGTCTTCCTTTGAGGATTTAAAAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140223593 543 - 143122389 AAGACTAATAAATA-CAGAATAATCACATATACTTTCGGTTTAAAGATTTATACCTTGCCAATTTTCCCAAAATGATTTAACACACCTCATTAAATATTTGTAAAATAAATTAAATCTTAAAATATATATTGGGAACCAATTAGGAGGAGAGAGAAAAAGACACCAGTTCCTAGACCAGCTTGGTTATTGTACTTGGACATTTCTTAGGCTCTGAATTTTATGGACGCTGAGGCAAATGGATCACAAAGGAGTAGAAGATAGGGGAAGGGAACAAAAGcatttactgtgctctcactgtgtgcagatcattctgttggccactttcccataccttatgccctt--tattctcacaacagacccttgaggtagttaccgttattttcatccacatcaaagtaagtggcagaggcaggatttgaaccaagcctgtttgactccaaagcctgtatgta-tttttt--actAGATTTAGGTTCTATTATTCTTACCCAATAAAGTG--ACACATGATTTGTCTGGAGATACCTAGTCTTCCTTTGAGGATTT---TTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16934551 544 - 229590362 AAGATTAATAAATA-CGGAATAGTCACATATAACTTCTGTTTAAAGATTTATACC-TACCAATTTTCCCAAAATGATGTAACACAACTCATTAAATATTTGTAACATAAATTAAATCTTAAAATATATACTGGGAACCAGCTAGAAGGAGAGAGAAAAAGACACCAGTTCCTAGACCAACTCGGGTATTGTACGTGGACATTTCTTAGGCTCTGAATTTTATGGACGATAAGGCAAATGGATCACAAAGGAGTAAAAGATAGGGGAAGGGaataaaagcatttattgtgctctcactgtgtgcagatcattctgctggccacttttccataccttatgccctt--tattctctcaacagaccc-tgaggtggttgccattattttcatacacatcaaagtaagtggcagacgcaagatttgaaccaagcctatttgactccaaagcctgtatgta-ttttttt-actAGGTTTAGGTTCTATTATTCTTACCCAATAAAGTGACACATATGATTTGTCTGGAGATACCTAGTCTTCCTTTGAGAATTT---TTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223697301 543 - 227556264 AAGACTAATAAATA-CGGAATAGTCACATATAACTTCCGTTTAAAGATTTATACC-TACCAATTTTCCCAAAATGATGTAACACAACTCATTAAATATTTGTAACATAAATTAAATCTTAAAATATATACTGGGAACCAGCTAGAAGGAGAGAGAAAAAGACACCAGTTCCTAGACCAACTCGGGTATTGTACGTGGACATTTCTTAGGCTCTGAATTTTATGGACGATAAGGCAAATGGATCACAAAGGAGTAAAAGATA-GGGAAGGGAACAAAAGcatttattgtgctctcactgtgtgcagatcattctgctggccacttttccataccttatgccctt--tattctcccaacagaccc-tgaggtggttgccattattttcatacacatcaaagtaagtggcagacgcaggatttgaaccaagcctatttgactccaaagcctgtatgta-ttttttt-actAGGTTTAGGTTCTATTATTCTTACCCAATAAAGTGACACATATGATTTGTCTGGAGATACCTAGTCTTCCTTTGAGAATTT---TTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16747860 545 - 220367699 AAGACTAATAAATA-CAGAATAGTCACATATAACTTCTGTTTAAAGATTTATACC-TACCAATTTTCCCAAAATGATTTAACAcaactcattaaatatttgtaacataaattaaatcttaaaatatatactgGGAACCAGCTAGAAGGCGAGAGAAAAAGACACCAGTTCCTAGACCAACTCGGGTATTGTACGTGGACATTTCTTAGGCTCTGAATTTTATGGACGCTAAGGCAAATGGATCATAAAGGAGTAAAAGAtaggggaagggaaaaaaagcatttactGTGCTCTCACTGTGTGCAGATCATTCTGCTGGCCACTTTTCCATACCTTATGCCCTT--TACTCTCCCAACAGACCC-TGAGGTAGTTGCCATTATTTTCATACACATCAAagtaagtggcagaggcaggatttgaaccaagcctatttgactccaaagcctgtatgtatttttttt-actagGTTTAGGTTCTATTATTCTTACCCAATAAAGTGACACACATGATTTGTCTGGAGATACCTAGTCTTCCTATGAGAATTT---TTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82545854 543 + 85787240 AAGACTAATAAATA-CAGAATAGTCACATATAACTTCTGTTTAAAGATTTATACC-TACCAATTTTCCCAAAATGATTTAATACAACTCATTAAATATTTGTGACATAAATTAAATCTTAAAATATATACTGGGAACCAGCTAGAAGGAGAGAGAAAAAGACACCAGTTCCTAGACCAACTTGGGTATTGTACATGGACATTTCTTAGGCTCTGAATTTTATGGACGCTAAGGCAAATGGATCACAAAGGAGTAAAGGATAGGGGAAGAGAACAAAAGcatttactgtgctctcactgtgtgcagatcattctgctggcctcttttccataccttatgcccgt--tattctcccaacagaccc-tgaggtagttgccattattttcatacacatcaaagtaagtggcagaggcaggatttgaaccaagcctatttgactccaaagcctgtatgt--ttttttt-actAGGTTTAGGTTCTATTATTCTTACCCAATAAAGTGACACATATGATTTGTCTGGAGATACCTAGTCTTCCTCTGAGAACTT---TTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14227484 539 - 49578535 AAGGCTAATCAACAGCAGAATAGTCACATATAACTTCTGTTTGAAGATTTATACCTTACCAATTTTCCCAAGATGATTTAAAGCAACttataaaatatttctaaaataaattaaatctt----tatatattGGGAACCAGTTAGAAGGAGAGAGAAAAAGACACCAGTTCCTAGACCAACTT-GTCATTGTACTTGGCCATTTCTTAGGCTCTGAATTATATGGACGCTGAGGCAAGTGGATCACAGAGGAGGAAAAGGTAGGGGAAGGGGACGAAAGCGCTGACTGTGCTCTCACCGTGTGCAGAGCGTTCTGCT-GCCGCTTTTCCAAA---TGTGTTGTTGATATTCTCACAATGGACCCTTGAGGTAGTTGCCATCATTTTCCTACACATCAAagcaagtagcagagccagggtttgaaccaagcctatttgactccaaagcctgtatgta-cttttt--actAGGTTTAGGTTCTATTATTCTTACCCAATAAAGTGACACCTATGATTTGTCTGGAGACATCTAGTTTTCCTTTGAGGAttt---ttt i calJac3.chr19 C 0 I 254 e mm10.chr1 178809318 41 + 195471971 I e canFam3.chr7 36375130 126 + 80974532 I a score=46766.000000 s hg38.chr1_KI270759v1_alt 218781 21 + 425601 AAAAAATGGATCCCTATGTAG s panTro4.chr1 224973389 21 + 228333871 AAAAAATGGATCCCTATGTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226335383 21 - 229942017 AAAAAATGGATCCCTATGTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140224136 21 - 143122389 AAAAAATGGATCCCTATGTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16935095 21 - 229590362 AAAAACTGGATCCCTATGTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223697844 21 - 227556264 AAAAACTGGATCCCTATGTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16748405 21 - 220367699 ACAAAATGGATCCCTATGTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82546397 19 + 85787240 AAAAAATGGAT--CTATGTAG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178809318 41 + 195471971 I e canFam3.chr7 36375130 126 + 80974532 I e calJac3.chr19 14228023 254 - 49578535 I a score=200094.000000 s hg38.chr1_KI270759v1_alt 218802 65 + 425601 AGAACATTGGGTAAAATCATAGTAACCTATGAAAAGTAGGTATTCAATCAATGTTTATGGAATAA s panTro4.chr1 224973410 65 + 228333871 AGAACATTGGGTAAAATCATAGTAACCTATAAATAGTAGGTATTCAATCAATGTTTATGGAATAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226335404 65 - 229942017 AGAACATTGGGTAAAATCATAGTAACCTATAAATAGTAGGTATTCAATCAATATTTATGGAATAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140224157 65 - 143122389 AGAACATTGGGTAAAATCATAGTAACCTATAAATTGTAGGTATTCAATCAATGTTTATGGAATAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16935116 65 - 229590362 AGAACATTGGGTAAAagcatagtaacctataaacagtaggtattcaatcaatgtttatggaataa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223697865 65 - 227556264 AGAACATTGGGTAAAAGCATAGTAACCTATAAACAGTAGGTATTCAATCAATGTTTATGGAATAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16748426 65 - 220367699 AGAACATTGGGTAAAAGCATAGTAACCTATAAATAGTAGGTATTCAATCAATGTTTATGGAATAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82546416 65 + 85787240 AGAACATTGGGTAAAAGCATAGTAACCTATAAATAGTAGGTATTCAATCAATGTTTATGGAATAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14228277 65 - 49578535 aaagtgctgggTAAAAGCATAGTAACCTATAAATAGTAGGTCTTCAATCAATATTTATGGAATAA i calJac3.chr19 I 254 C 0 e mm10.chr1 178809318 41 + 195471971 I e canFam3.chr7 36375130 126 + 80974532 I a score=2368219.000000 s hg38.chr1_KI270759v1_alt 218867 739 + 425601 CATGAGTAAATAAATGCATGGATAATAAGATGAAGGATATCTTCTTTAA-TTTTATAAGCTAAGTAACTGTTTTTT-GTAAATGCTTCTATGTTAACTATTAACCTCTATAAAAAACAAAGCCATATCTTAGCTTCATAATTCAGTCTAAGGCAGTTAGGTAAATACTTAACAATTTAATATTTTATGTTTTtttctttcatagtttaatttctcaaaagaatagccgaggccccccttatctttacttcttccac-ccctatttacttctcaacccactgaaatgtgctccgtgtttcctctgattctgttcaaggtcaataatgaactcattaattctaatccaagggacactttgcattctctgt-cttttttggtctctcaggggcatttaacat-tcttagccacttgttccgtcttcc---------------tctttacctctctg-------gctgctcctttgtaa------------tcttctc--ttttatatt--------------cactcatgaagtattgaggattttcatggatctgtcacgggttgtgttctgcttgccttctactctgcacctccctgggtcatctcatccactctcataactccagctgccagcttcatgcagaagactctcaaatctGAAAACTGGGATCAACT-ATTTTTTATATCCAAATACTCTAAATGAAGATCTAAGCCAAGACTGTCTATCTTGAAAG-TAAGTTATTTCTGTCTATGGAGGCAAAGGCTCACGTAGGAAGTGAAGAATCTTATATATTT s panTro4.chr1 224973475 739 + 228333871 CATGAGTAAATAAATGCATGGATAATAAGATGAAGGATATCTTCTTTAA-TTTTATAAGCTAAATAACTGTTTTTTTGTAAATGCTTCTATGTTAACTATTAACCTCTATAAAAAACAAAGCCATATCTTAGCTTCATAATTCAGTCTAAGGCAGTTAGGTAAATACTTAACAATTTAATATTTTATGTTTTtttctttcatagtttaatttctcaaaagaatagccgaggccccc-ttatctttacttcttccac-ccccatttacttctcaacccactgaaatgtgctccgtgtttcctctgattctgttcaaggtcaataatgaactcattaattctaatccaagggacactttgcattctctgt-attttttggtctctcaggggcatttaacat-tcttagccacttattccatcttcc---------------tctttacctctctg-------gctgctcctttgtaa------------tcttctc--ttttatatt--------------cactcatgaagtattgaggattttcatggatctgtcacgggttacgttctgcttgccttctactctgcacctccctgggtcatctcatccactctcataactccagctgccagcttcatgcagaagactctcaaatctGAAAACTAGGATCAACT-ATTTTTTATATCCAAATACTCTAAATGAAGATCTAAGCCAAGACTGTCTATCTTGAAAG-TAAGTTATTTCTGTCTATGGAGGCAAAGGCTCATGTAGGAAGTGAAGAATCTTATATATTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226335469 736 - 229942017 CATGAGTAAATAAATGCGTGGATAATAAGATGAAGGATATCTTCTTTAA-TTTTATAAGCTAAATAACTGTTTTTT-ATAAATGCTTCTATGTTAA-TATTAACCTCTATAAAAAACAAAGCCATATCTTAGCTTCATAATTCAGTCTAAGGCATTTAGGTAAATACCTAACAATTTAATATTTTATG-TTTtttctttcatagtttaatttctcaaaagaatagccgaggccccc-ttatctttacttcttccac-ccccatttacttctcaactcactgaaatgtactccgtgtttcctctgattctgttcaaggtcaataatgaactcattaattctaatccaagggacactttgcattctctgt-cttttttgatctctcaggggcatttaatat-tattagccacttgttccatcttcc---------------tctttacctctctg-------gctgctcctttgtaa------------tcttctc--ttttatatt--------------cactcatgaagtattgaggattttcacggatctgtcgcgggttacattctgcttgccttctactctgcacctccctgggtcatctcatccactctcataactccagctgccagcttcatgcagaagactctcaaatctGAAAACTGGAATCAACG-ATTTTCTATATCCCAATACTCTGAATGAAGATCTAAGCCAAGATTGTCTATCTTGAAAA-TAAGTTATTTCTGTCTATGGAGGCAAAGGCTCATGTAGGAAATAAAGAATCTTATATATTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140224222 748 - 143122389 CATGAGTACATAAATGCATGG---ATAAGATGAAGGATATCTTCTTTAA-TTTTATAAACTAAATAACTGTTTTTT-ATAAATGCTTCTGTGTTAACTATTAACCTCTATAAAAAACAAAGCCACATCTTAGCTTCATAATTCAGTCTAAGGCATTTAGGTAAATACCTAACAATTTAATAttttg---ttttttctttcatagtttaatttctcaaaagaatagccgaagccccc-ttatctttacttcttccac-ccccatttacttctcaacccactgaaatgtactccgtgtttcctctgattctgttcgaggtcaatgatgaactcattaattctaatccaatggacactttgcactctctgtccttttttggtctctcaggagcatttaacat-tattagccactcgttccatcttCC---------------TCTTTAACTCTCTG-------GCTGCTCCTTTGTAA------------TCTTCTCTTTTTTATATTGAGAAGTATTGAAGTACTCATGAAGTACTGAGGATTTTCATGGATCTGTCAGAGGTTACGTTCTGCTCACCTTCCACTCTGCACCTCCCTGGGTCATCTCCTCCACTCTCATATCTCCAGCTGCCC-CTTCATGCAGAAGACTCTCAAATCTGAAAACCAGAATCAAAT-ATTTTTTATATCCAAATACTCTAAATGAAgatctaagccaagattgtctatcttgaaaa-taagttatttctgtctatggaggcaaaggctcatgtaggaagtgaagaatcttatctattt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16935181 736 - 229590362 catgagtAAATAAATGCATGGATAATAAGATGAAGGATATCTTCTTTAA-TTTTATAAGCTAAATAACTATTTTTT-ATGAATTCATCTATGTTAACTATTAACCTCTATAAAAAACAAAGCCATATTTTAGCTTCATAATTCCGTCTAAGGCATTTAGGTAAATACCTAACAATTTAATATtttatg-ttttttctttcatagtttaatttctcaaaagaatagccgaggccccc-ttatctttacttcttccac-ccccatttacttctcaacccactgaaatgtactgcgtgtttcttctgattctgttcaaggtcaaaaatgaactcattaattctaatccaatggacactctgtat--tctgt-cttttttagtctctcaggggcttttaacat-tattaaccacttgttccatcttcc---------------tctttacctctctg-------gctgctcctttataa------------tcttctc-tttttatatt--------------cactcatgaagtattgaggattttcatggacctgtcacgggttaccttctgctcgtcttctactctgtacctccctgggtcatctcaccccctcgcataactccagccaccggcttcatgcagaaggctctcaaatctGAAAACCAGAATCAAAT-TTTTTTTATATCCAAATACTCTAAATGAAGATCTAAGCTGAGATTGTCTATCTTGAAAA-TAAGTTATTTTTGTCTATGGAGGCAAAGGCTAATGTAGGAAGTGAAGAATGTTATATATTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223697930 736 - 227556264 CATGAGTAAATAAATGCATGGATAATAAGATGAAGGATATCTTCTTTAA-TTTTATAAGCTAAATAACTATTTTTT-ATGAATTCGTCGATGTTAACTATTAACCTCTATAAAAAACAAAGCCATATTTTAGCTTCATAATTCCGTCTAAAGCATTTAGGTAAATACCTAACAATTTAATATTTTATG-TTTtttctttcatagtttaatttctcaaaagaatagccgaggccccc-ttatctttacttcttccac-ccccatttacttctcaacccactgaaatgtactgcgtgtttcttctgattctgttcaaggtcaaaaatgaactcattaattctaatccaatggacactctgtat--tctgt-cttttttagtctctcaggggcttttaacat-tattaaccacttgttccatcttcc---------------tctttacctctctg-------gctgctcctttataa------------tcttctc-tttttatatt--------------cactcatgaagtattgaggattttcatggacctgtcacgggttaccttctgctcgtcttctactctgtacctccctgggtcatctcaccccgtcgcataactccagccaccggcttcatgcagaaggctctcaaatctGAAAACCAGAATCAAAT-TTTTTTTATATCCAAATACTCTAAATGAAgatctaagccgagattgtctatcttgaaaa-taagttatttttgtctatggaggcaaaggctaatgtaggaagtgaagaatgttatatattt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16748491 737 - 220367699 CATGAGTAAATAAATGCATGGATAACAAGATGAAGgatatcttctttaa-ttttataagCTAAATAACTGTTTTTT-ATGAATGCTTCTATGTTAACTATTAACCTCTATAAAAAACAAAGCCATATTTTAGCTTCATAATTCCATCTAAGGCATTTAGGTAAATACCtaacaatttaatattttatg-ttttttctttcatagtttaatttctcaaaagaatagcCGAGGCCCCC-TTATCTTTACTTCTTCCAC-CCCCATTTACTTCTCAACCCACTGAAATGTACTGCGTGTTTCTTCTGATTCTGTTCAAGGTCAAAAATGAACTCATTAATTCTAATCCAATGGACACTCTGTAT--TCTGT-CTTTTTTAGTCTCTCAGGGGCTTTTAACGT-TATTAACTACTTGTTCCATCTTCC---------------TCTTTACCTCTCTG-------GCTGCTCCTTTGTaa------------tcttctc-tttttatatt--------------cACTCATGAAGTATTGAGGATTTTCATGGACCTGTCACGGGTTACCTTCTGCTCGCCTTCTACTCTGTACCTCCCTGGGTCATCTCACCCCATCGCATAACTCCAGCCACCGGCTTCATGCAGAAGATTCTCAAATCTGAAAACCAGAATCACAt-tttttttATATCCAAATACTCTAAATGAAGATCTAAGCCGAGATTGTCTATCTtgaaaattaagttatttttgtCTATGGAGGCAAAGGCTAATGTAGGAAGTGAAGAATGTTATATATTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82546481 729 + 85787240 TATGAGTAAATAAATGCATGGATAATAAGATGAAGGATATCTTCTTTAA-TTTTATAAGCTAAATAACTGTTTTTT-ATGAATGCGTCTATGTTAACTATTAACCTCTATAAAAAACAAAGCCATATTTTAGCTTCATAATTCCGTCTAAGGCATTTAGGTAAATACC--------TAATATGTTATGTTTTtttctttcatagtttaatttctcaaaagaatagccgaggccccc-ttgtctttacttcttccac-ccccatttacttctcaacccactgaaatgtactgcgtgtttcttctgattctgttcaaggtcaaaaatgaactcattaattctaatccaatggacactttgtat--tctgt-cttttttagtctctcaggagcttttaactt-tattaaccacttgttccatcttCC---------------TCTTTACCTTTCTG-------GCTGCTCCTTTATAA------------TCTTCTC-TTTTTATATT--------------CACTCATGAAGTATTGAGGATTTTCATGGATCTGTCACGGGTTACCTTCTGCTCGCCTTCTACTCTGTACCTCCCTGGGTCATCTCACCCCCTCGCATAACTCCAGCCACCGGCTTCATGCAGAAGACTCTCAAATCTGAAAACCAGAATCAAAT-TTTTTTTATATCCAAATACACTAAATGAAgatctaagccaagattgtctatcttgaaaa-taagttatttttgtctatggaggcaaaggctgatgtaggaagtgaagaatcttatatattt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14228342 732 - 49578535 CATGAGTAAATAAATGAATGGATAATGAGATGAAGGATATCCTCTTTAA-TTTTATAAGCTAAATAACTGAATTTT-ATGAATGCTTCTATATTAACTATTAACCTCTATAAAAAACAAAGCCCTATCTTAGCATCATAATTCAGTCTAAAGCATTTA-GTAAATACCTAACAATTTAATATTTTATG-TTTtttctttcatagtttaatttctcaaaagagtagtctaggccccc-ttatcttcacttctttcac-ccccgtttacttctccacccacggaaatgtactctgtgtttcctccaattctgttcaaggtcagtaatgaactcattaattctaatccagtggacactctgcattctctgt-ctcttttggtctctcgggggcatttaacat-tattaaccacttgttccatcttcc---------------tc-ttacctctctg-------gctgctcctttgtaa------------tcttctc-tttttatacc--------------ctctcattaagtgttgaggattctcatggatctgtcataggctactttccgttctccttctcctctgcacct-cctggctcatgtcattcactctcataactccagctgccatcttcatgcagaagactctcaaatctGAAAACCAGAATCAGAT--TTTTTTATATTCAAATACTCTAAATGAAGACCTAAGCCGAGATTATCTGTCTTGAAGA-T--GTTATTTCTGTCTCTGAAGACAACAGCTAATGTAGCAAGTGAAGAATCTGATCTATTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36375256 759 + 80974532 catgaatggatgaatgaatgaatgaataaataaataaaATCTTCTTTAATTTTTATAAGCTGTAGACATGGTTTT--ATGGGTACTTTTA-------TATCTACCCCTACTAAATAC--AGTCATACCATAGCATTGTAATTTGGTGTAAGGCATTTAGGTAAAGGCCTAAAAATATAATGTTTTG---TTTTTTATTTTCTTGTTCAATGTTTTGAAAGAGCAGCATAGACCTCC-TTATCTTTACTTCTTCAGCTCCCCATTTATTCCTTAACCCGCTGAAATGTACTTTGCCTCTCCCCTGACTCTGTTCAAGGTCAATGATGAACGAATTAGTTCTGGTCCAGTGGATACTCTTCATTCACTGT-TTCTGTTGGTTTCTTAGTGGTATTTAACATCCAGTGACTAGTTGGTCTGTCTCCCCACCACCACCCACCACCCCCGCCTCTCTGCTGCTTTGCTGCTTCTTTATAGGTTCCTTTGACCTCCTGTC-TCTTTGCAT---------------CATTGATCAGAAGGTAAGGGTCCTCACAATTCGATCACAGGCCATTCCCTGTTCTTGTTCTGGTAGGCACCTCCCTGG-CCACCTTATCCACTCTTGTGACGTCAGTTGCCATCTTCATGCTAAAGACTCTGCAATCTGAAAAAATAAACCAAATATTTTTTTATTTTCAAATACT---AAGAAAGATCTAAACCATGATTATATGTCTGGAAAA-TCAGTGGTTTCTCTTCATGAAGTCGAAGGCTAGGGAAAAAAGTGAAAACTCTCAAATAttt i canFam3.chr7 I 126 I 161 e mm10.chr1 178809318 41 + 195471971 I a score=1401080.000000 s hg38.chr1_KI270759v1_alt 219606 404 + 425601 CTAAGCCA----------------------------------TTTCTTGGCAGTCAGTCACGTATTAGGAGTCAGTTCTGTGTGTTTTTAAATACAGCATTGAACGACTCAGTG--TTTGTTGTTATT----------------------AGTGATTTGTTGGACAGGATAGAGAGAAAGCACAGTTATTTAAAGATAAAGTGTTTGTAGCCCTTCTCAATTGAATAGCATACATACAGATAAGATGTC-TGTGAAATTTTAATAGAAATCAATGTGAAATAAGATTCAATTTATAAAATCTCAAATTACAGGCAACTTGTCAAAGCCTAGCTGTTGTGTAAACGTGGGAATTCACACAAGGAAAAGAtgattgattggttgattgattATATAACATGAGTTACATTCTATCCAATTGCACCTGAATATATTCACAGACGCAGCTGGATGGC--TCTGATTTAG s panTro4.chr1 224974214 426 + 228333871 CTAAGCCA----------------------------------TTTCTTGGTAGTCAGTCACGTATTAGGAGTCAGTTCTGTGTGTTTTTAAATACAGCATTGAACGACTCAGTG--TTTATTGTTATTCGACTCAGTGTTTATTGTTATTAGTGATTTGTTGGACAGGCTAGAGAGAAAGCACAGTTATTTAAAGATAAAGTGTTTGTAGCCCTTCTCAATTGCATAGCATACATACAGATAAGATGTC-TGTGGAATTTTAATAGAAATCAGTGTGAAATAAGATTCAATTTATAAAATCTCAAATTACAGACAACTTGTCAAAGCCTAGCTGTTGTGTAAACGTGGGAATTCACACAAGGAAAAGACGATTGATTGGTTGATTGATTATATAACATGAGTTACATTCTATCCAGTTGCACCTGAATATATTCACAGACGCAGCTGGATGGC--TCTGATTTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226336205 399 - 229942017 CTAAGCCA----------------------------------TTTCTTGGTAGTCAGTCATGTATTAGGAGTCAGTTCTGTGTGTTTTTAAATACAGCATTGAACGACTCAGTG--TTTGTTGTTATT----------------------AGCGATTTGTTGGACAGGCTAGAGAGAAAGCACAATTATTTAAAGATAAAGTGTTTGTAGCCCTTCTCAAGTGAATAGCATACATACAGATAAGATGTC-TGTGAAATTTTAATAGAAATCAATGTGAAATAAGATTCAATTTATAAAATCTCAAATTACAGGCAACTTGTCAA-----AGCTGTTGTGTAAACGTGGGAATTCACACAAGGAAAAGACGATTGATTGGTTGATTGATTATATAACACGAGTTACAGTCTATCCAATTGCACCTGAATATATTCACAGACGCAGCTGGATGGC--TCTGATTTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140224970 405 - 143122389 ctaagcca----------------------------------tttcttggtaGTCAGTCATGTATTAGGAGTCAGTTCTGTGTGTTTTTAAATACAGCATTGAACGACTCAGTG--TTTGCTGTTATT----------------------AGTGATTTGTTGGCCAGGCTAGAGAGAAAGCACAGTTATTTAAAGATAAAGTGTTAGTAGCCCTTCTCAATTGAATAGCATACATACAGATAAGATGTC-TCTGAAATTTTAATAGAAATCAATGTGAAATAAGATTCAATGTATAAAATCTCAAATTACAGGCAACTTGTCAAAGCATAGCTGTTATGTAAACGTGGGAATTCACACAAGGAAAAGACGATTGATTGGTTGATTGATTATATAACATGAGTTACATTCTATCCAATTGCACCTGAATATATTCACAGACACAGCTGGATGGC-TTCTGATTTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16935917 399 - 229590362 CTTAGCCA----------------------------------TTTCTTGGTAGTCAGTCATATATTAGGAGTCAGTTCTGTGTGTTTTTAAATACAGCATTGAACGACTCAGTG--TTTGTTGTTATT----------------------AGTGATTTGTTGGACAGGCTAGAGAGAAAGCACAGTTATTTAAAGATAAAGTGTTTTTAGCCCTTCTCACTTGAATAACATACATACAGATAAGATGTC-TGTGAACTTTTAATAGAAATCAATGTGAAATAAGATTCAATTTATAAAATCTCAAATTACAGGCAACTTGTCAAAGCATAGCTGTTGTGTAAACGTGGGAATTCACACAAGGAAAAGACGATTGATTGGTTGATTGATTATATAAC------TACATTCTATCCAATTGCCCCTGAATATATTCACAGACACAGCTGGATGGC-TTCTGATTTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223698666 405 - 227556264 cttagcca----------------------------------tttcttggtaGTCAGTCATATATTAGGAGTCAGTTCTGTGTGTTTTTAAATACAGCATTGAACGACTCAGTG--TTTGTTGTTATT----------------------AGTGATTTGTTGGACAGGCTAGAGAGAAAGCACAGTTATTTAAAGATAAAGTGTTTTTAGCCCTTCTCACTTGAATAACATACATACAGATAAGATGTC-TGTGAACTTTTAATAGAAATCAATGTGAAATAAGATTCAATTTATAAAATCTCAAATTACAGGCAACTTGTCAAAGCATAGCTGTTGTGTAAACGTGGGAATTCACACAAGGAAAAGACAATTGATTGGTTGATTGATTATATAACATGAGTTACATTCTATCCAGTTGCCCCTGAATATATTCACAGACACAGCTGGATGGC-TTCTGATTTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16749228 405 - 220367699 CTTAGCCA----------------------------------TTTCTTGGTAGTCAGTCATGTATTAGGAGTCAgttctgtgtgtttttaaatacaGCATTGAACGACTCAGTG--TTTGTTGTTATT----------------------AGTGATTTGTTGGACAGGCTAGAGAGAAAGCACAGTTATTTAAAGATAAAGTGTTTGTAGCCCTTCTCAACTGAATAACATACATACAGATAAGAGGTC-TGTGAACTTTTAATAGAAATCAATGTGAAATAAGATTCAATTTATAAAATCTCAAATTACAGGCAACTTGTCAAAGCATAGCTGTTGTGTAAACGTGGGAATTCACACAAGGAAAAGAcgattgattggttgattgattaTATAACATGAGTTACATTCTATCCAATTGCCCCTGAATATATTCACAGACACAGCTGGATGGC-TTCTGATTTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82547210 405 + 85787240 cttagcca----------------------------------ttgcttggtaGTCAGTCATGTATTAGGAGTCAGTTCTGTGTGTTTTTAAATACAGCATTGAACGACTCAGTG--TTTGTTGTTATT----------------------AGTGATTTGTTGGACAGGCTAGAGAGAAAGCACAGTTATTTAAAGATAAAGTGTTTGTAGCCCTTCTCAATTGAATAACATACATACAGATAAGATGTC-TCTGAACTTTTAATAGAAATCAATGTGAAATAAGATTCAATTTATAAAATCTCAAATTACAGGCAACTTGTCAAAGCATAGCTGTTGTGTAAACGTGGGAATTCACACAAGGAAAAGACGATTGATTGGCTGATTGATTATATAACATGAGTTACATTCTATCCAATTGCCCCTGAATATATTCACAGACACAGCTGGATGGC-TTCTGATTTAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14229074 404 - 49578535 CTTAGCTA----------------------------------TTTTTTGGTAATCAGTCAT-TATTAGGAGCCACAGCTGTGTATTTTTAAATGCAGCATCGAACGACTCAGTG--TTGGTTGTTATT----------------------AGTGATCTGTTTGCCAGGTGAGAGGGAAAGCACAGTTATTTAAAGGTGAAGTGTGTGTAGCCCTTCTCAACTGAATAGCATGCATGCAGATAAGAGGTC-TCTGAAATTTTAATAGAAATCAATGTGAAATAAGATTCAATTGATAACATCTCAAATTACAAGCAACTTGTCAAAACATAGCTGTTGTGTAAATGTGGGAATTCACACAAGGAAAAGACGATTGATTGGTTGATCGATTATATAACATGAGTTACATTCTATCCGATTGCGCATGAATATATTCACAGACATAGCTGGATGGC-TTCTGGTTTAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36376176 422 + 80974532 ctgaaccacctgggctgcccGAAAACTCTCAAATATTAACATTTTCTTGGTAATTAGTTTTATGTCAGGAGTCACTTCTGTTTATCTTT------------GAACGACTCTTTGCATTGGTGGTTATT----------------------ATTTA--TGTTTGACAGAGTAGAAGGAAAGCACAGACATTTCAAGATAAAGTGCTTATAGCCACTCTCAATTGAATATCATTCATAAAGATAAAATGCCTTCTGAAATTTTAATAGAAATCAATGTGAAATAAGATTCAATTTATAAAAACTCAAATTACAAGCAATTTGT-AGAGCAGATCTGTTGTGTAAATGTGGGAATCCACAC---GAGAAGATGATTGATCATTTGATTGATTATATG---TGAATCACATTCTCTTTGACTGCACGTGAATGTATTCACGGACACAGCTGGATGGCATCCTGGTCTAG i canFam3.chr7 I 161 C 0 e mm10.chr1 178809318 41 + 195471971 I a score=733369.000000 s hg38.chr1_KI270759v1_alt 220010 203 + 425601 AGAACAAGTA-TTTTCTTCTTTTCAC--------------ACAATCTGTTCCTAGAAGCGCCATCAAAACATAAATATTATTTT-CTCATAATAATATAAGGCATAGTGATTTTATTCTTAGCCAAGGATTTAGTGTTGTAGAAT--TAGTTATAATTAACAATGTGTTAGTAAAGTTGAGATAGTATTTT-AAACCTATCTGAGTACTTAAAATAATGTAA s panTro4.chr1 224974640 203 + 228333871 AGAACAAGTA-TTTTCTTCTTTTCAC--------------ACAATCTGTTCCTAGAAGTGCCATCAAAACATAAATATTATTTT-CTCATAATAATATAAGGCATAGTGATTTTATTCTTAGCCAAGGATTCAGTGTTGTAGAAT--TAGTTATAATTAATAATGTGTTAGTAAAGTTGAGATAGAATTTT-AAACCTATCTGAGTACTTAAAATAATGTAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226336604 204 - 229942017 AGAACAAGTATTTTTCTTCTTTTCAC--------------ACAATCTGTTCCTAGAAGTGCCATCAAAACATAAATATTATTTT-CTCATAATAATATGAGGCATAGTGATTTTATTCTTAGCCAAGGATTCAGTGTTGTAGAAT--TAGTTATAATTAACAATGTGTTAGTAAAGTTGAGATAGTATTTT-AAACGTATCTGGGTACTTAAAATAATGTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140225375 203 - 143122389 AGAACAAGTA-TTTTCTTCTTTTCAC--------------ACGATCTGTTCCTAGAAGCACCATCAAAACATAAATATTATTTT-CTTATAATAATATAAGGCATAGTGATTTTATTCTTAGCCAAGGATTCAGTGTTGTAGAAT--TAGTTATAATTAACAATGTGTTAGTGAAGTTGAGATAGTATTTT-AAACCTATCTGGGTACTTAAAATAATGTAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16936316 199 - 229590362 AGAACAAGTA-TT---TTCTTTTCAC--------------ACAATCCATTCCTAGAAGCACCATCAAAACATAAATATTATTTT-CTCATAATAATATAAGGCATAGTGATTTTATTCTTAACCAAGGATTCAGTGTTGTAG-AT--TAGTTATAATTAACAGTGTGTTAGTAAAGTTGAGATAGTATTTT-AAACCTACCTGGGTACTTAAACTAATGTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223699071 199 - 227556264 AGAACAAGTA-TT---TTCTTTTCAC--------------ACAATCCATTCCTAGAAGCACCATCAAAACATAAATATTATTTT-CTCATAATAATATAAGGCATAGTGATTTTATTCTTAACCAAGGATTCAGTGTTGTAG-AT--TAGTTATAATTAACAGTGTGTTAGTAAAGTTGAGATAGTATTTT-AAACCTATCTGGGTACTTAAACTAATGTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16749633 199 - 220367699 AGaacaagta-tt---ttcttttcac--------------acAATCCATTCCTAGAAGCACCatcaaaacataaatattatttt-ctcgtAATAATATAAGGCATAGTGATTTTATTCTTAACCAAGGATTCAGTGTTGTAG-AT--TAGTTATAATTAACAGTGTGTTAGTAAAGTTGAGATAGTATTTT-AAACCTACCTGGGTACTTAAACTAATGTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82547615 200 + 85787240 AGAACAAGTA-TT---TTCTTTTCAC--------------ACAATTCATTCCTAGAAGCACCATCAAAACATAAATATTATTTT-CTCATAATAATATAAGGCATAGTGATTTTATTCTTAACCAAGGATTCATTGTTGCAGAAT--TAGTTATAATTAACAATGTGTTAGTAAAGTTGAGATAGTATTTT-AAACCTACCTGGGTACTTAAACTAATGTAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14229478 204 - 49578535 AGAGCAAGTA-TTTTCTTCCTTTCAC--------------GAGATCTGTTCCTAGAACCTCCATCAAAATGTAAATATTATTTTGCTCGTAATAATATAAGACATAGTGATTTTATTCTTAGCCAAGGATTCAGTGTCATAGAAT--TAGTTGTGCTTAACAATGTGTTAGTAAAGTTGAGATAATATTTT-AAATCTATCTAGGTACTTAAAATAACGAAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178809359 206 + 195471971 AGAGCAAGAA-TGTTTTACTTTTTTCTT-----------GACAGTCTGTTCCTAGATGCTTTATCAGAGCATCAATATGATTTTCCTCACAGTAATATCAGGCCTGATGA-TTTATTCTTAGCCAGGCACTCAATGTCAAAAGATTATAGGAATAATTAACATGGTGCTA---AAGTTGAAATACTACTTTAAAATCGATATGGTCACTTAAAAGAGCATAA i mm10.chr1 I 41 I 835 s canFam3.chr7 36376598 214 + 80974532 AGAATGGGTG-TTCTCTTCTTTTCACGCAATCTGTTCAGAGCAATCTGTTCCCAGAAGCTCTCTTAAAACATAAATATTATTTTCCTGATAATAATATCA-ACATGGGCATTTTATTCTTAGCCAAGGATTCAGCGTCAGAAAACTGTAGTCATAATTAACTACAAGTTAGTAAAATTGAGATAGTACTTT-AAACCTATGTGGCTACTTTATATAA----- i canFam3.chr7 C 0 C 0 a score=20448.000000 s hg38.chr1_KI270759v1_alt 220213 5 + 425601 TTTTG s panTro4.chr1 224974843 5 + 228333871 TTTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226336808 5 - 229942017 TTTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140225578 5 - 143122389 TTTTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16936515 5 - 229590362 TTTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223699270 5 - 227556264 TTTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16749832 5 - 220367699 TTTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82547815 5 + 85787240 TTTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14229682 5 - 49578535 TTTTG i calJac3.chr19 C 0 I 622 s mm10.chr1 178810400 5 + 195471971 TTATG i mm10.chr1 I 835 C 0 s canFam3.chr7 36376812 5 + 80974532 TCATG i canFam3.chr7 C 0 C 0 a score=45587.000000 s hg38.chr1_KI270759v1_alt 220218 18 + 425601 CTCCAGATTCTGCCAAAA s panTro4.chr1 224974848 18 + 228333871 CTCCAGATTCTGCCAAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226336813 17 - 229942017 TTCCAGATTCTGCC-AAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140225583 17 - 143122389 CTCCAGATTCTGCC-AAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16936520 17 - 229590362 CTCCATATTCTGCC-AAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223699275 17 - 227556264 CTCCATATTCTGCC-AAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16749837 17 - 220367699 CTCCATATTCtgcc-aaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82547820 17 + 85787240 CTCCATATTCTGCC-AAA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178810405 17 + 195471971 CTCCAGATTCTGCA-GAA i mm10.chr1 C 0 I 1 s canFam3.chr7 36376817 14 + 80974532 CTCCCAGTTCTGCA---- i canFam3.chr7 C 0 C 0 e calJac3.chr19 14229687 622 - 49578535 I a score=642837.000000 s hg38.chr1_KI270759v1_alt 220236 186 + 425601 AAAATGGAAATTATTTAACCTAGGATTCTAATAACTAAC--------------------AGTATCCATAGCATTAAAAAT-TAC--CTTT---ACATATTGTAAATGTCACCTGCCTACAAATAACATGTCCATTAA-AGTAAACATTACTTAAATATGCAG-CTCAACAGGGCCTGGTTTC---TTTACAA-TTAACTAGAAAATTTGAACTAAATC s panTro4.chr1 224974866 186 + 228333871 AAAATGGAAATTATTTAACCTAGGATTCTAATAACTAAC--------------------AGTATCCATAGCATTAAAAAT-TAC--CTTT---ACATATTGTAAATGTCACCTGCCTACAAATAACATGTCCATTAA-AGTAAACATTACTTAAATATGCAG-CTTAACAGGGCCTGATTTC---TTTACAA-TTAACTAGAAAATTTGAACTAAATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226336830 185 - 229942017 AAAATGGAAATTATTTAACCTACGATTCTAATAACTAAC--------------------AGTATCCATAGCATTAAAAAT-TAC--CTTT---ACATATTGTAAATGTCACCTGCCTACAAATAACATGTCCATTAA-AGTAAACATTAGTTAAATATGCAG-CTTAACAGGGCCTGGTTTC----TTACAA-TTAACTAGAAAATTTGAACTAAATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140225600 186 - 143122389 AAAATGCAAATTATTTAACCTAGGATTCTAATAACTAAC--------------------AGTATCCATAGCATTAAAAAT-TAC--CTTT---ACATATTGTAAATGTCACCTGCCTACAAATAACATGTCCATTAA-AGTAAACATTAGTTAAATATGCAG-CTTAACAGGGCCTGGTTTC---TTTACAA-TTAACTAGAAAATTTGAACTAAATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16936537 186 - 229590362 AAAATGGAAATTATTTAACCTAGGATTCGAATAACTAAC--------------------AGTATCCATAGCATTAAAAAT-TAC--CCTT---ACATATTGTAAATGTCACCTACCTACAAGTAACATGTCCATTAA-AGTAAATATTAGCTCAATATGCAG-TTTAACAGGGCCCAGTTTC---TTTACAA-TTAACTACAAAATTTGAACTAAATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223699292 186 - 227556264 AAAATGGAAATTATTTAACCTAGGATTCGAATAACTAAC--------------------AGTATCCATAGCATTAAAAAT-TAC--CCTT---ACATATTGTAAATGTCACCTACCTACAAGTAACATGTCCATTAA-AGTAAACATTAGCTCAATATGCAG-TTTAACAGGGCCCAGTTTC---TTTACAA-TTAACTACAAAATTTGAACTAAATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16749854 186 - 220367699 aaaatggaaattatttaacCTAGGATTCAAATAACTAAC--------------------AGTATCCATAGCATTAAAAAT-TAC--CCTT---ACATATTGTAAATGTCACCTACCTACAAGTAACATGTCCATTAA-AGTAAACATTAGCTCAATATGCAG-TTTAACAGGGCCTAGTTTC---TTTACAA-TTAACTACAAAATTTGAACTAAATC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82547837 185 + 85787240 AAAATGGAAATTATTTAACCTA-GATTCTAATAACTAAC--------------------AGTATCCATAGCATTAAAAAT-TAC--CTTT---ACATATTGTAAATGTCACCTACCTACAAATAACATGTCCATTAA-AGTAAACATTAGCTCAATATGCAG-TTTAACAGGGCCCAGTTTC---TTTACAA-TTAACTAGAAAATTTGAACTAAATC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14230309 185 - 49578535 AAAATAGAAATTATTTAACCTAGGATTCTAATAACTA----------------------AGTATCGGTAGCATTAAAAAT-CAC--CTTT---ACATATTGTCAATGTCATCTGCCTACAAATAACATGTCCATTAA-AGTAAACATGAGTTAAATATGCAGTCTTAACAGGGCCTGGTTTC---TTTACAA-TTATCTAGGAAATTTGAACTAAATC i calJac3.chr19 I 622 C 0 s mm10.chr1 178810423 194 + 195471971 -ACAAGGGAACTACTTACATTAGGAGTCTAATAACTAACTAATATCTATTTAACTTAGGAGTCTCCATAG----AAAAAT-CATTATTCT---GAATTTTGTACTTTGCACCT-------------ATGTCTACTAAGATTTAAAACTAGTTCAGTGTGCAA-TTTATTGTGTTCTGGGTCCATTTATAGAA-TTCACTATGTAATTTTAAATAAATC i mm10.chr1 I 1 C 0 s canFam3.chr7 36376831 187 + 80974532 AAAATGGGCTTCATTTAGCTTAGGATTCCAATAACTAGG--------------------ACTAGCCACAGCATAAGAAATGTAA--TTTTAGGACCTACTGTAGATTTCACCTACCTA-AACTAGGATGCCTTCCAA-AGTAAACATTAGTGAATCGTGCAG-CTTCATC---TCGGGTCTC---TTTGCAAGTTAACCAGGAACTGTGAAGGAAATC i canFam3.chr7 C 0 I 841 a score=22655.000000 s hg38.chr1_KI270759v1_alt 220422 5 + 425601 TTCCT s panTro4.chr1 224975052 5 + 228333871 TTCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226337015 5 - 229942017 TTCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140225786 5 - 143122389 TTCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16936723 5 - 229590362 TTCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223699478 5 - 227556264 TTCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16750040 5 - 220367699 TTCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82548022 5 + 85787240 TTCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14230494 5 - 49578535 TTCCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178810617 5 + 195471971 TTCCT i mm10.chr1 C 0 I 1146 s canFam3.chr7 36377859 5 + 80974532 TCCAT i canFam3.chr7 I 841 C 0 a score=579431.000000 s hg38.chr1_KI270759v1_alt 220427 172 + 425601 GAAGATTTCTTCTCTATTAAAAACAAAAGCTGCCTCCTTTCCTTGCTTCACAGCTTTTTGGACCTGCCTGTGATGAGTGTCCTTTATTGCCCAGTGTAATTTTGCCATGGTTTTTAGCAATCTGCAAACACTCCAGCCCAGGTAACCTGACGGTAGCATAGACAGGAAAGGA s panTro4.chr1 224975057 172 + 228333871 GAAGATTTCTTCTCTATTAAAAACAAAAGCTGCCTCCTTTCCTTGCTTCACAGCTTTTTGGACCTGCCTGTGATGAATGTCCTTTATTGCCCGGTGTAATTTTGCCATGGTTTTTAGCAATCTGCAAACACTCCAGCCCAGGTAACCTGACGGTAGCATAGACAGGAAAGGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226337020 171 - 229942017 GAAGATTTCTTCTCTATTAAAAACGAAAGCTGCCTCCTTTCCTTGTTTCACAGC-TTTTGGACCTGCCTGTGATGAGTGTCCTTTATTGCCCAGTGTAATTCTGTCATGGTTTTTAGCAGTCTGCAAACACTCCAGCCCAGGTAACCTGACGGTAGCATAGACAGGAAAGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140225791 171 - 143122389 GAAGATTTCTTCTGTATTAAAAACAAAAGCTGCCTCCTTTCGTTGTTTCACAGC-TTTTGGACCTGCCTGTGATGAGTGTCCTTTATTGCCCAGTGTAATTTTGCCATGGTTTTTAGCAATCTGCAAACACTCCAGCCCAGGTAACCTGACGGTAGCATAGACAGGAAAGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16936728 171 - 229590362 GGAGATTTCTTCTCTATGAAAAACAAAAGCTGCCTCCTTTCCTTGTTTCACAGT-TTTTGGGCCTGCCTGTGATGAGTGTTCTTTATTGCCCAGTGTAATTTTGCCATGGTTTTCAGCAATCTGCAAACACTCCAGCCCAGGTAACTTGACGGTAGCATAGACAGGAAAGGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223699483 171 - 227556264 GGAGATTTCTTCTCTATGAAAAACAAAAGCTGCCTCCTTTCCTTGTTTCACAGT-TTTTGGGCCTGCCTGTGATGAGTGTTCTTTATTGCCCAGTGTAATTTTGCCATGGTTTTCAGCAATCTGCAAACACTCCAGCCCAGGTAACTTGACGGTAGCATAGACAGGAAAGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16750045 171 - 220367699 GGAGATTTCttctctatgaaaaacaaaagctgcCTCCTTTCCTTGTTTCACAGT-TTTTGGGCCTGCCTGTGATGAGTGTTCTTTCTTGCCCAGTGTAAttttgccatggttttcagcAATCTGCaaacactccagcccaggtaaccTGACGGTAGCATAGACAGGAAAGGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82548027 171 + 85787240 GGAGATTTCTTCTCTATTAAAAACAAAAGCTGCCTCCTTTCCTTGTTTCACAGT-TTTTGGGCCTGCCTGTGACGAGTGTTCTTTAGTGCCCAGTGTAATTTTGCCATGGTTTTCAGCAATCTGCAAACACTCCAGCCCAGGTAACCTGACGGTAGCATAGCCAGGAAAGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14230499 170 - 49578535 GAAGATTTCTTCTCTATGAGGAAGAGAAGCTGCCTCCTGTCCTTGTTTCACAGC-CTTTGGACCTGCCT-TGATCAGTGTCCTTTATTGCCCAGTGCAATTTTGCTGTGGTTTTCAGCAGTCTACATATACTCCAGCCCAGGTACCCTGACAGTGGCATAGACAGGTAGACA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36377864 166 + 80974532 GGAGATGGCTTGTGTATTGAAGA-AAAAGCTGCCTCCTT---CTGCATCAGAGCTTTTTGGACATGCTTGTGGTGAGTGCACTTTATTG--CAGTATGCCTTTGCCATGGTTGTCAGTAGTCTGCACAGACTCTAACCCACGTGACTTGGAGGTGGAGCAGATAGGAAAGGA i canFam3.chr7 C 0 C 0 e mm10.chr1 178810622 1146 + 195471971 I a score=4207987.000000 s hg38.chr1_KI270759v1_alt 220599 1123 + 425601 GGGGATGTGAATTTCTGCCTCTCTGCCTCTAGTGGGGCTGCTAAGGTACCAGCCATCTA-AACATCTGCCCAGGTCTTGGTGCAGTCCAGCTTTTCAGCAGAGTCAAGGGCAGAAATTCTGCCCGACTTCTGTGTCTGGTACCTATTTGTACAATGCAGAGGTCCC-------ATGCAAATT-GTTTTCCTTTGAAATAAC---C---TTAATGATTTCTTCAGGTTTCAACTACAGTAAATAATTTGTTAAATAAAA--------------------------------------------------------------------------------------ATATTAGAATGAAAGGGGGGAAAAGAAATTACTTCCTCTAGCAAATGAGACTCTTAAATTCAAATTTAATTAACCAAGACGCCCCCAAACCACAGAGCATGTCACCCAGCGTTGACAATTAATTAGCTTTGCTCTG-------AAAGAGCTACAGGTACCCAGCAAAGAGTTACGGATTAAAGGC--TTTACTCGCTCTGCG-----AAGGCTGCCCATTTCTAGCTATCACACCTTGATAGTGGTTTGTTGCTTCAGGCAACAAATTACATCTGAAGTGTGTGATTTCATGTCCGTTTTTAATTTCACACAATTGAAATATGGGAAAAGTGAAAATAAAGCTCTACTTCTTTTCAAAATAAAGCTCTATTTCTTTCAAAATAAAGACATTAAAAGTGAACAACACTACTTCTTTTCGGTTTCTCATGCTGTTCAAGATAATTTTCTATCAAACGGTGAAGGAAGATAAATACTAAGGAAAACTCTAAAGGAATGAGTGGTCACTC-TTGGCTTTTAGGCGGGCTCTC-TGTTTATGGTAGACCATTCAGCTTCTTCCTTTTAGCATTAAATTAGCATATGTATAAATGATTTAACTAGAAACT--TGGAGCTAGCATCTAAAAGGCAGCATGGTGTAATGAAAAGAACATTAGATTCCTTCGATTCTTGAAATCAGATTATCTGGGATATGCTTATCCCTTGAAGGAATCTTAATTTTAGTTGGATAGTCCTTAAACTAGA-----------------------AAAGATATACGTACATATTTTATAGACAATTGCTTCTCAGCCGAAAAATCAGGCACTGACATTCCATGAGGAATGGACTTTAATTAGCCGGTGATTGTCTTTCTCTGTCTAT-ATTTATAGGCAACCGAAATAGCTGGGTTGTAGGTACATGGTTTC s panTro4.chr1 224975229 1123 + 228333871 GGGGATGTGAATTTCTGCCTCTCTGCCTCTAGTGAGGCTGCTAAGGTACCAGCCATCTA-AACATCTGCCCAGGTCTTGGTGCAGTCCAGCTTTTCAGCAGAGTCAAGGGCAGAAATTCTGCCCGACTTCTGTGTCTGGTACCTATTTGTACAATGCAGAGGTCCC-------ATGCAAATT-GTTTTCCTTTGAAATAAC---C---TTAATGATTTCTTCAGGTTTCAACTACAGAAAATAATTTGTTGAATAAAA--------------------------------------------------------------------------------------ATATTAGAATGAAAGGGGGGAAAAGAAATTACTTCCTCTAGCAAATGAGACTCTTGAATTCAAATTTAATTAACCAAGATGCCCCCAAACCACAGAGCATGTCACCCAGTGTTGACAATTAATTAGCTTTGCTCTG-------AAAGAGCTACAGGTACCCAGCAAAGAGTTACGGCTTAAAGGC--TTTACTCGCTCTGTG-----AAGGCTGCCCATTTCTAGCTATCATGCCTTGATAGTGGTTTGCTGCTTCGGGCAACAAATTACATCTGAAGTGTGTGATTTCATGTCCGTTTTTAATTTCACACAATTGAAATATGGGAAAAATGAAAATAAAGCTCTACTTCTTTTCAAAATAAAGCTCTATTTCTTTCAAAATAAAGACATTGAAAGTGAACAACACTACTTCTTTTCGGTTTCTCATGCTGTTCAAGATAATTTTCTATCAAACGGTGAAGGAAGATAAATACTAAGGAAAACTCTAAAGGAATGAGTGGTCACTC-TTGGCTTTTAGGTGGGCTCTC-TGTTTATGGTAGACCATTCAGCTTCTTCCTTTTACCATTAAATTAGCATATGTATAAATGATTTAACTAGAAACT--TGGAGCTAGCATCTAAAAGGCAGCATGGTGTGATGAAAAGAACATTAGATTCCTTCGATTCTTGAAATCAGATTATCTGGGATATGCTTATCCCTTGAAGGAATCTTAATTTTAGTTGGATAGTCCTTAAACTAGA-----------------------AAAGATATACATACATATTTTATAGACAATTGCTTCTCAGCCGAAAAATCAGGCACTGACATTCCATGAGGAATGGACTTTAATTAGCCCGTGATTGTCTTTCTCTGTCTAT-ATTTATAGGCAACCGAAATAGCTGGGTTGTAGGTACATGGTTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226337191 1083 - 229942017 GGGGATGTGAATTTCTACCTCTCTGCCTCTAGAGGGACTGCTAAGGTACCAGCCATCTA-AACATCTGCCCAGGTCTTGGTGCAGTCCAGCTTTTCAGCAGAGTCAAGGGCAGAAATTCTGCCCCACTTCTGTGTCTGGTACATATTTGTACAATGCAGAGGTCCC-------ATGCAAATT-GTTTTCCTTTGAAATAAC---C---TTAATGATTTCTTCAGGTTTCAACTACAGTAAATAATTTGTTAAATAAAA--------------------------------------------------------------------------------------ATATTGGAATGAAAGGGGGGAAAAGAAATTACTTCCTCTAGCAAATGAGACTCTTATGTTCAAATTTAATTAAACAAGAAGCCCCCAAACCACAGAGCATGTCACCCAGCATTGACAATTAATTAGCTTTGCTCTG-------AATGAGCTACAGGTACCCAGCAAAGAGTTACGGATTAAAGGCTTTTTACTCGCTCTGCG-----AAGGCTGCCCATTTCTAGCTATCACACCTTGATGGTGGTTTGCTGCTTCAGGCAACAAATTATATCTGAAGTGTGTAATTTCATGTCCGTTTTTAATTTCACACAATTGAAATATGGGAAAAGTGAGAATAAAGCTCTATTTCT----------------------TTTCAAAATAAAGACATTAAAAGTGAACAACACTACTTCTTTTTGGTTTCTCATGCTGTTCAAGATAATTTTCTATCAAATGGTGCAGGAAG----------------ACTCTAAGGGAATTAGTGGTCACTC-TTGGCTTTTAAGTGGGCTCTC-TGTTTAAGGTAGACCATTCAGCTTCTTCCTTTTAGCATTACATTACCATATGTATAAATGATTTAGCTAGAAACT--TGG----AGCATCTAAAAGGCAGCATGGTGTAATGAAAAGAACATTAGATTCCTTCGATTCTTGAAATCAGATTATCTGGGATATGCTTATCCCTTGAAGGAATCTTAATTTTAGTTGGATAGTCCTTAAACTAGA-----------------------AAAGATATGCATACATATTTTATAGACAATTCCTTCTCAGCTGAAAAATCAGGCACTGACATTCCATGAGGAATGGACTTTCATTAGCTGGTGATTGTCCTTCTCTGTCTAT-ATTTATAGACAGCCGAAATAGCTGGATTGTAGGTACATGGTTTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140225962 1085 - 143122389 GGGGATGTGAATTTCTACCTCTCTGCCTCTAGTGGGGCTGCTAAGGTACCAGCCATCTA-AACATCTTCCCAGGTCTTGGTGCAGTCCAACTTGTCAGCAGAGGCAAGGGCAGAAATTCGGCCCCACTTCTGTGTCTGGTACATATTTGTACAATGCAGAGGTCCC-------ATGCAAATT-GTTTTCCTTTGAAATAAC---C---TTAATGATTTCTTCAGGTTTCAACTACAGTAAATAATTTGTTAAATAAAA--------------------------------------------------------------------------------------ATATTGGAATGAAAGGGGGGAAAAGAAATTACTTCTTCTAGCAAATGAGACTCTTATATTCAGATTTAATTAACCAAGATGCCCCCAAACCACAGAGCATGTCACCCAGCATTGACAATTAATTAGCTTTGCTCTG-------AAGGAGCTACAGGTACCCAGCAAAGAGTTACGGATTAAAGGT--TTTACTCGCTCTGCG-----AAGGCTGCCCATTTCTAGCTATCACACCTTGATAGTGGTTTGCTGCTACAGGCAACAAATTATATCTGAAGTGTGTAATTTCATGTCCGTTTTAAATTTCACACAATTGAAATACAGGAAAAGTGAGAATAAAGCTCTATTTCT----------------------TTTCAAAATAAAGACACTAAAAGTGAACAACACTACTTCTTTTTGGTTTCTCATGCTGTTCAAGGTGATTTTCTATCAAACGGTGAAGGAAG----------------ACTCTAAGGGAATTAGTGGTCACTC-TTGGCTTTTAAGTGGGCTCTC-TGTTAATGGTAGACCATTCAGCTTCTTCCTTGTAGCATTACATTAGCATTTGTATAAATGAGTTAACTAGAAACT--TGGAGCTAGCATCTAAAAGGCAGCATGGTGTAATGAAAAGAACATTAGATTCCTTCGATTCTTGAAATCAGATTATCTGGGATATGCTTATCCCTTGAAGGAATCTTAATTTTAGTTGGATAGTCCTTAAACTAGA-----------------------AAAGATATGCATACATATTTTATAGACAATTGCTTCTCAGCCGAAAAATCAGGCACTGACATTCCATGAGGAATGGACTTTAATTAGCCTGTGATTATCTTTCTCTGTCTAT-ATTTATAGGCAACTGAAATAGCTGGGTTGTAGATACATGGTTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16936899 1186 - 229590362 GGGGCTGTGAATTTCTACCTCTCTGCCTCTAGTGGGGCTGCTAAGGTACCAACCATCTA-AACGACTGCCCAGGCCCTGGTGCAGTCCAGCTTTTCAGCAGAGTCAAGGGCAGAAATTCTGACCTACTTCTGTGTCTGGTACATATTTGTAAAGTGCAGAGGTCCC-------AGGCAAATT-GTTTTCCTTTGAAATAAC---C---TTACTGATTTCTTCAGGTTTCAACTACAGTAAATAATTTGTTAAATAAAAATATTGGAatgtaagaaacctgcacattatgcacatgtaccctacaacttaaagtataataataataaataaattaaaaaaTATATATATTGGAATTAAAGGGGGGAAAATAAATTACTTCCTCTAGCAAATGAGACTCTTATATTCAAATTTAATTAACCAAGAAG-CCCCAAACCACAGAGCATGTCACCCAGCATTGACGATTAATTAGCTTTGCTCTG-------AAAGAGCTACAGGTACCCAGCAAAGAGTTACGGATTAAAGGC--TTTACTTGCTCTGCT-----AAGGCTGCCCATTTCTAGCTCTCACACCTTGATAGTGGTTTGCTGCTTCAGGCAACAAATTATATCTGAAGTGTGTAATTTCATGTCAGGTTTTAATTTCACACAATTGAAATATGGGAAAAGCGAGAATAAAACTCTATTTCT----------------------TTTCAAAATAAAGAGATTAAAAGTGAACAGCACAACTTCTTTTCGGTTTCTCATGCTGTTCAAGATAATTTTCTATCAAACGGCGAAGGAAGATAAATACTAAGGAAAGCTCTAAAGGAATTAGTGGTCACTC-TTGGCTTTTAAGTGGGTTCTC-TGTTTACGGTAGACCATTCAACTTCTTCCTTTTAGCATTACATTAGCATATGTATAAATGATTTAACTAGAAACT--TGGAGCTAGCATCTAAAAGGCAGCATGGTGTAATGAAAAGAACATTAGATTCATTCGATTCTTGAAATCAGATTATCTGGGATATGCTTATCCCTTGAAGGAATCTTAATTTTAGTTGGATAGTCCTTAAACCAGA-----------------------AAAGATAGGCATACATATTTTATAGACAATTGCTTCTCAGCCGAAAAATCAGGCACTGACATTCCATGAGGAATGGACTTTAATTAGCCGGTGATTGTCTTTCTCTGTCTAT-ATTTATAGGCAACTGAAATAGCTGGGTTGTAGATACATGGTTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223699654 1100 - 227556264 GGGGCTGTGAATTTCTACCTCTCTGCCTCTAGTGGGGCTGCTAAGGTACCAACCATCTA-AACGACTGCCCAGGCCCTGGTGCAGTCCAGCTTTTCAGCAGAGTCAAGGGCAGAAATTCTGACCTACTTCTGTGTCTGGTACATATTTGTAAAGTGCAGAGGTCCC-------AGGCAAATT-GTTTTCCTTTGAAATAAC---C---TTACTGATTTCTTCAGGTTTCAACTACAGTAAATAATTTGTTAAATAAAA--------------------------------------------------------------------------------------ATATTGGAATTAAAGGGGGGAAAATAAATTACTTCCTCTAGCAAATGAGACTCTTATATTCAAATTTAATTAACCAAGAAG-CCCCAAACCACAGAGCATGTCACCCAGCATTGACGATTAATTAGCTTTGCTCTG-------AAAGAGCTACAGGTACCCAGCAAAGAGTTACGGATTAAAGGC--TTTACTTGCTCTGCT-----AAGGCTGCCCATTTCTAGCTCTCACACCTTGATAGTGGTTTGCTGCTTCAGGCAACAAATTATATCTGAAGTGTGTAATTTCATGTCAGGTTTTAATTTCACACAATTGAAATATGGGAAAAGCGAGAATAAAACTCTATTTCT----------------------TTTCAAAATAAAGAGATTAAAAGTGAACAGCACAACTTCTTTTCGGGTTCTCATGCTGTTCAAGATAATTTTCTATCAAACGGCGAAGGAAGATAAATACTAAGGAAAGCTCTAAAGGAATTAGTGGTCACTC-TTGGCTTTTAAGTGGGTTCTC-TGTTTATGGTAGACCATTCAGCTTCTTCCTTTTAGCATTACATTAGCATATGTATAAATGATTTAACTAGAAACT--TGGAGCTAGCATCTAAAAGGCAGCATGGTGTAATGAAAAGAACATTAGATTCATTCGATTCTTGAAATCAGATTATCTGGGATATGCTTATCCCTTGAAGGAATCTTAATTTTAGTTGGATAGTCCTTAAACCAGA-----------------------AAAGATAGGCATACATATTTTATAGACAATTGCTTCTCAGCCAAAAAATCAGGCACTGACATTCCATGAGGAATGGACTTTAATTAGCCGGTGATTGTCTTTCTCTGTCTAT-ATTTATAGGCAACTGAAATAGCTGGGTTGTAGATACATGGTTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16750216 1105 - 220367699 GGGGCTGTGAATTTCTACCTCTCTGCCTCTAGTGGGGCTGCTAAGGTACCAACCATCTA-AACGACTGCCCAGGCCCTGGTGCAGTCCAGCTTTTCAGCAGAGTCAAGGGCAGAAATTCTGACCTACTTCTGTGTCTGGtacatatttgtaaaatgcagaGGTCCC-------AGGCaaatt-gttttcctttgaaataac---C---TTACTGATTTCTTCAGGTTTCAACTACagtaaataatttgttaaataaaa--------------------------------------------------------------------------------------atattgcaattAAAGGGGGGAAAATAAATTACTTCCTCTAGCAAATGAGACTCTTATATTCAAATTTAATTAACCAAGAAG-CCCCAAACCACAGAGCATGTCACCCAGCATTGACGATTAATTAGCTTTGCTCTG-------AAAGAGCTACAGGTACCCAGCAAAGAGTTACGGATTAAAGGC--TTTACTTGCTCTGCTAGTAAAAGGCTGCCCATTTCTAGCTCTCACACCTTGATAGTGGTTTGCTGCTTCAGGCAACAAATTATATCTGAAGGGTGTAATTTCATGTCAGGTTTTAATTTCACACAATTGAAATATGGGAAAAGCGAGAATAAAActctatttct----------------------tttcaaaataaagagattaaaagTGAACAGCACAACTTCTTTTCGGTTTCTCATGCTGTTCAAGATAATTTTCTATCAAACGGCGAAGGAAGATAAATACTAAGGAAAGCTCTAAAGGAATTAGTGGTCACTC-TTGGCTTTTAAGTGGGTTCTC-TGTTTATGGTAGACcattcagcttcttcctttgaGCATTACATTAGCATATGTATAAATGATTTAACTAGAAACT--TGGAGCTAGCATCTAAAAGGCAGCATGGTGTAATGAAAAGAACATTAGATTCATTCGATTCTTGAAATCAGATTATCTGGGATATGCTTATCCCTTGAAGGAATCTTAATTTTAGTTGGATAGTCCTTAAACCAGA-----------------------AAAGATAGGCATACATATTTTATAGACAATTGCTTCTCAGCCGAAAAATCAGGCACTGACATTCCATGAGGAATGGACTTTAATTAGCCGGTGATTGTCTTTCTCTGTCTAT-ATTTATAGGCAACTGAAATAGCTGGGTTGTAGATACATGGTTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82548198 1099 + 85787240 GGGGCTGTGAATTTCTACCTCTCTGCCTCTAGTGGGGCTGCTAA-GTACCAGCCATCTA-AACGACTGCCCAGGCGCTGGTGCAGTCCGGCTTTTCAGCAGAGTCAAGGGCAGAAATTCTGACCTGCTTCTGTGTCTGGTACATATTCGTAAAATGCAGAGGTCCC-------AGGCAAATT-GTTTTCCTTTGAAATAAC---C---TTACTGATTTCTTCAGGTTTCAACTACAGTAAATAATTTGTTAAATAAAA--------------------------------------------------------------------------------------ATATTGGAATTAAAGGGGGG-AAATAAATTACTTCCTCTAGCAAATAAGACTCTTATGTTCAAATTTAATTAACCAAGAAGCCCCCAAACCACAGAGCATGTCACCCAGCATTGACGATTAATTAGCTTTGCTCTG-------AAAGAGCTACAGGTACCCAGCAAAGAGTTACGGATTAAAGGC--TTTACTTGGTCTGCT-----AAGGCTGCCCATTTCTAGCTCTCACACCTTGATAGTGGTTTGCTGCTTCAGGCAACAAATTATATCTGAAGTGTGTAATTTCATGTCAGGTTTTAATTTCACACAATTGAAATATGGGAAAAGTGAGAATAAAGCTCTATTTCT----------------------TTTCAAAATAAAGAGATTAAAAGTGAACAGCACAACTTCTTTTCGGTTTCTCATGCTGTTCAAGATAATTTTCTATCAAACGGCGAAGGAAGATAAAGACTAAGGAAAGCTCTAAAGGAATTAGTGGTCACTC-TTGGCTTTTAAGTGGGTTCTC-TGTTTATGGTAGACCATTCAGCTTCTTCCTTTTAGCATTACATTAGCATATGTATAAATGATTTAACTAGAAACT--TGGAGCTAGCATCTAAAAGGCAGCATGGTGTAATGAAAAGAACATTAGATTCATTCGATTCTTGAAATCAGATTATCTGGGATATGCTTATCCCTTGAAGGAATCTTAATTTTAGTTGGATAGTCCTTAAACCAGA-----------------------AAAGATAGGCATACATATTTTACAGACAATTGCTTCTCAGCCGAAAAATCAGGCACTGACATTCCATGAGGAATGGACTTTAATTAGCCGGTGATTGTCTTTCTCTGTCTAT-ATTTATAGGCAACTGAAATAGCTGGGTTGTAGATACATGGTTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14230669 1104 - 49578535 GCAGATGTGAATTTCTACCTCTCTGCCTCTAGTGGGGCTGCTAAGGTACCAGCCGTCTA-AACAACTGCCCAGGTCTTGGTGCAGGCCAGCTTTACAGCAGAGTCAGGGGCAGAAATTCTGACCCACTTCTGTGTCTGGTACATATTTGTACAATGCAGAGGTCCTTTGTATAATGCAAATTGGTTTTTTTTTTTAATAAC---C---TTAATGATTTCTTCAGATTTCAACTACAGTAAATAATTTGTTAAATAAAA--------------------------------------------------------------------------------------ATATTGGAATTAAAAGGGGGAAAAGAAATTACTTCCTCTATCAAATGAGACTGTTATATTCAAATTTAATT-ACCAAGAAGCCCCCAAACCACAGAGCATGTCACCTAGCTTTGACAATTAATTAGCTTTGCTCTG-------AAAGAGCTACAGGTACCCAGCAAAGAGTTACAGATGAAAGGC--TTTTCTCGCTCTGCC-----AA-GCTGCCCACTTTTAGCTATCACACCTTGATAGCGGTTTGCTGCTTTGGGCAACAAATTATACCTGAAGTGTGTAATTTCATGTCAGTTTTTAATTTCACCCAGTTGAAATCTGGGAAAAGCGAGAATAAAGCGCTATTTCT----------------------TTTCAAAATAAAGACATTAAAATTGAGCAGCACAACTACTTT--AGTTTCTTATGCTGTTCAAGATAATTTTCTATCCAACAGTTAAGGAAGGTAAATACTAAGGAAAACTCCAAAGGAATTAGTGGTCACTC-TGGACTTTTACGTGGGCTCTC-TGTTTATGGCCGATCACACAGCTTCTTCCTC-TAGCATCACGTTAGCATACGTATGAATGATTTAACTTGAAACT--TGGAGTTGCCATCTAAAAGGCAGCATGATGTAATGAAAAGAACATTAGATTCATTCAATTCTTGAAATCGGATTATCTGGGATATGCTTATTCCTTGAAGGAATCTTAATTTTAGTTGGATAGTCCTTGAACTAGA-----------------------AAAGATATGCATATATATTTTATAGACAATTGCTTCCCAGCCAAAAAATCAGGCACTGACATTCCATGAGGAATGGGCTTTAATTAGCAGATGATTGTCTTTCTCTGTCTAT-ATTTATAGGCAACTGAAATAGCTGGGTTGTAGATACATGGTTTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178811768 1042 + 195471971 GGTGATGTAAATTTCAACCTCTTACACTTCCGCAGGGTTGCCGAAGTACCAGCAGTCCATAACCACAGCCAGGAATCTAGGGCAGTCCTACCTTGCAGCGGAGACCA-GACAGAGAGT--GACCCACTTCTTGCTCAGTTCCATACAGTTGCTGTGCAGAGCCCCC-------ATTCAGATG-GTTTTCATTCGGAATGCC---TTAGTTAATGATTTCTTCAGATTTCACCTGTGGTAAATAATTTTGAAAATAAAA--------------------------------------------------------------------------------------ATAT----------GGCAGGGAAGAAAATCACTTCTTCTATCAAGTGAAAC--TTATATTCAAATTTAATTAACCAAGAAACCCTCAAAGCAGATAGCATGTCACATAGCATTGACAATTAATTAGTTTTGCTCTGGAAAAAAAAAAAACTGTAGGCA-TGAGCAAAGAGTTATAGATT--AGGC--TTTGTTTCCTCTGCC-----AACACTGCCCATTTCTAGTTCTCACACCTTGACAGCAGTTTGCAGCTTCAGGCAACACATTGTATCTGAAGTGTGTAACTCCGTGTCAGTTTTAAATTTCACATAAGCAAAATACA-GAGGAATGAGCATAACACGCTATTACT----------------------TTT-ATAATGAAGACTTTAGAAGTGAGCAGCAAGAC-------CAGTTTC----------CAAGACAGTCTTGTGCCAAATAGAGAAGGAAGATAAATCTTAAGGAAAACTC-AGAGGAAGGAATGGCTGCCCACTGGCTTTGAGATGGACAGCC-TGTTTCTGGTAGACCATGGGACCTCTTCCTTTTAACTTTACATTAGCACATGGATAAGTGACTTAGCCCAA----------------------------------TGTAATGAAGAGATCATTACATTCATTGGAGCCTTGAAATCAGATTAGCTGGAATATGCTTATTCCTTGAAGGGATTTTAATTTTGGTTGGGCAGTCCTCATGCTGTG-----------------------ATAGACATACATCCATCTTTTATGCACAATTGCATCTCAGCAGAAAAATTGAGCACTT-CATTCTCTAAGGAGCAG-CTGTAACTCACCTATGGTTATCTTTTTCTGCCTGTAATTTATAGACACTCTAAACAACAGTCTTATAGATGCATGGtgtc i mm10.chr1 I 1146 I 1520 s canFam3.chr7 36378030 1097 + 80974532 AGAGGTATAAGTTTCTGCCTCTTTCCCTCTAGCAAGGCTGCAGAGGTGCAGGCAATCAA-GAAGAAGGCCTGGTATCTG--------CAGCCTTACAGTAGAGTCAGGGACAGGTGTTCTGTGCCCCTGCCGTGTCCAGTTCTTACCTTTGTATTGCAGAGACCCT-------GTGCAGATT-GTCATTCTTTGAAATAACTTAC---TTAATCATGCCCTCCAGTTTCAACTATAGCAAATAATTTGTTGAACGAAA-------------AGAA---------------------------------------------------------------------ATATTGAAATTAAAGGAG----AAAAAATTACTTCCTTTAGCAAACAAAGCCGTTATATTCAAATTTAATTAACCAAGAAGCCCCCAAACCACAGAGCGTGTCACCCAGCATTGACAATTAATTATCTTTGCTCTG-------AAGGAGCCACAGGTATTGAGCAAAGAG-TATGGATTAAAGGC--TTTATTTTCTCTGCC-----AACACTGTCCATTTCTAGCTATCACACCCTGATAACACTTGGCTGCTTCAGGCATCAAATTATTTCTTGAGTGAGTAACTTCATGTTAGTTGGTGATTTCACATGACC-AAGTATGGAAAGAATGAGAATAAAGCACCATTTCT----------------------TT--AAAATAAAGACCTCAAAAGTGAACA-CAGGGCTGCTGTTCAAATTCTTCTGCTTTTCAAGATAATTCTCTACCAAACAGCTAAGTAAGATAAATATTAAGGAAAACTTGTAGGGAATTAGTGGCCACCC-TTGGCTTTTAAATGAGTCATCTTGTTTGTGGTAAATCATGCACCTTCTTCCTT-TAACATTACATTAGCATATGTATAAATGATTTAACTAGAAACTACTGAAGTTAGCATTTAAAAGGCAGCATGACGTAATAAAAAGAACATTAAATTCATTAGGTTCTTGAAACCAAATTATCTGGCATATGCTTATTCCTTGAAGGAATCTTAATTTTAGTTGGATGGTCTTTGTAGAAGATCTGTGTACCTGCACGAGTGCACACACACATGCACACACACACTATGGACAATTGTTTCTCACCAGAAAAATCAGGCCCTAGCATTCCACCAAAAATGGACTTTAGTTAGCCTGCGATTGTCTTTTTCTGTCTAT--------------------AGCTAGATGGTAGTTACCTGGTTTC i canFam3.chr7 C 0 C 0 a score=328382.000000 s hg38.chr1_KI270759v1_alt 221722 97 + 425601 ATCAATTCCATTTAATAAGACcagccagttcactatcattcatgttcatgaaagataggaataacgtcagttaactaaaatcatttatatctggctt s panTro4.chr1 224976352 97 + 228333871 ATCAATTCCGTTTAATAAGACCAGCCAGTTCACTATCATTCATGTTCATGAAAGATAGGAATAATGTCAGTTAACTaaaatcatttatatctggctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226338274 97 - 229942017 ATCAATTCCGTTTAATAAGACCAGCCAGTTTGCTATTATTCATGTTCATGAAAGATAGGAATAATGTCAGTTAACTAAAATCATTTATATCTGGCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140227047 97 - 143122389 ATCAATTCCATTTAATAAGACCAGCCAGTTCACTGTTATTCATGTTCATGAAAGATAGGAATAATGTCAGTTAACTAAAATCATTTATACCTGGCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16938085 97 - 229590362 ATCAATTCCGTTTAATAAGACcagccagttcgctgttattcatgttcatgaaagatagcaataatgtcagtgaactacaatcatttatatctggctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223700754 97 - 227556264 ATCAATTCCGTTTAATAAGACCAGCCAGTTCGCTGTTATTCATGTTCATGAAAGATAGCAATAATGTCAGTGAACTACaatcatttatatctggctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16751321 97 - 220367699 ATCAATTCCGTTTAATAAGACCAGCCAGTTCGCTGTTATTCATGTTCATGAAAGATAGCAATAATGTCAGTGAACTACAATCATTTATAACTGGCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82549297 97 + 85787240 ATCAATTCCGTTTAATAAGACCAGCCAGTTCGCTGTTATTCATGTTCATGAAAGATAGCAATAATGTCAGTTAACTATaatcatttatatctggctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14231773 97 - 49578535 ATCAAATCCATTTAATAAGACCAGCCAGTTCTCTATTATTCATGTTCATGAAAGATAGCAATAATGTCAGTTAACTAAAATCAGTTATTTCTGGCTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36379127 96 + 80974532 ATCCACTTCATTCAGTAAGACTACCTGGTTCTCAAATATTCGTGTTTATGAAAGATCCCAGTAATCACGGTTAACTTAAATCACATACATCTTGTT- i canFam3.chr7 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I a score=1911.000000 s hg38.chr1_KI270759v1_alt 221819 1 + 425601 t s panTro4.chr1 224976449 1 + 228333871 t i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226338371 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140227144 1 - 143122389 T i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82549394 1 + 85787240 t i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14231870 1 - 49578535 T i calJac3.chr19 C 0 C 0 s canFam3.chr7 36379223 1 + 80974532 T i canFam3.chr7 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e rheMac3.chr1 16938182 0 - 229590362 C e papAnu2.chr1 16751418 0 - 220367699 C e macFas5.chr1 223700851 0 - 227556264 C a score=14109.000000 s hg38.chr1_KI270759v1_alt 221820 40 + 425601 gggatggc-ttt------------------------------------------------ttttttttttttttttttttttttgagat s panTro4.chr1 224976450 36 + 228333871 gggatgGC-----------------------------------------------------tttttttttttttttttttttttgagat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226338372 41 - 229942017 GGGATGGCtttt------------------------------------------------ttttttttttttttttttttttttgagac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140227145 26 - 143122389 GGGATGGC---------------------------------------------------------------ttttgttttttttgagat i nomLeu3.chr5 C 0 C 0 s canFam3.chr7 36379224 89 + 80974532 GGGATGGATTTTAAACTTAGACTTGCATTTACTTGGGTCTGGTGTCCTAGGTGTTCACAGTTCTTtttttttttttttttttttaagat i canFam3.chr7 C 0 I 745 e mm10.chr1 178812810 1520 + 195471971 I e calJac3.chr19 14231871 0 - 49578535 C e rheMac3.chr1 16938182 0 - 229590362 C e chlSab2.chr25 82549395 0 + 85787240 C e papAnu2.chr1 16751418 0 - 220367699 C e macFas5.chr1 223700851 0 - 227556264 C a score=141849.000000 s hg38.chr1_KI270759v1_alt 221860 276 + 425601 ggagtctggctatgtcgcccaggctggagcgcagtggcgtgatctcggctcactgcaagctccacctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgcaaccacgcccggctaattttttgtatttttagtagagacggggtttcaccgcattagccaggatggtctcgatctcctgacctcgtgatccacctgcctcggcctccgaaagtgatgggattacagacgtgagccaccgcgcccggcc s panTro4.chr1 224976486 276 + 228333871 ggagtcttgctctgtcgcccaggctggagtgcagtggcgtgatctcggctcactgcaagctccacctcctgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgcaaccacgcccggctaattttttgtatttttagtagagacggggtttcaccgcattagccaggatggtctcgatctcctgacctcgtgatccacccgccttggcctccgaaagtgctgggattacagacgtcagccaccgcgcccagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226338413 276 - 229942017 ggagtctcgctctgtcccccaggctggagtgcagtggggcgatctcggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcacctgcaaccacgcctggctaattttttgtatttttagtagagacggggtttcaccctgttagccaggatggtctccgtctcctgaccttgtgatccgcccgcctcggcctccgaaagtgctgggattacaggtgtgagccaccgcgcccagcG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140227171 276 - 143122389 ggagtcttgctgtgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccacctcccgggttcatgccattcgcctgcctcagccttccaagtagctgggactacaggcgcctgcaaccatgcccggctaattttttgtatttttagtagagaggggatttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccgcccaccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36379313 745 + 80974532 I e calJac3.chr19 14231871 0 - 49578535 C e rheMac3.chr1 16938182 0 - 229590362 C e chlSab2.chr25 82549395 0 + 85787240 C e papAnu2.chr1 16751418 0 - 220367699 C e macFas5.chr1 223700851 0 - 227556264 C a score=2100.000000 s hg38.chr1_KI270759v1_alt 222136 1 + 425601 c s panTro4.chr1 224976762 1 + 228333871 C i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226338689 1 - 229942017 C i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140227447 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16938182 1 - 229590362 c i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223700851 1 - 227556264 c i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16751418 1 - 220367699 C i papAnu2.chr1 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36379313 745 + 80974532 I e calJac3.chr19 14231871 0 - 49578535 C e chlSab2.chr25 82549395 0 + 85787240 C a score=149414.000000 s hg38.chr1_KI270759v1_alt 222137 50 + 425601 gggatggctttttaatgcatgtttaaatggatctggtgtcttaggtgttt s panTro4.chr1 224976763 50 + 228333871 GGGATGGCTTTTTAATGCATGTTTAAATGGATCTGGTGTCTTAGGTGTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226338690 49 - 229942017 GGGATGGCTTTTTAATGCA-GTTTAAATGGATCTGGTGTCTTAGGTGTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140227448 50 - 143122389 GGGATGGCTTTTTAATGCATGTTTAAATGGATCTGGTGTCTTAGGTGTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16938183 50 - 229590362 gggacgggtttttaatgcacgtttaaatggatctgatgtcttaggtgttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223700852 50 - 227556264 gggacgggtttttaatgcacgtttaaatggatctgatgtcttaggtgttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16751419 50 - 220367699 GGGACGGGTTTTTAATGCACGTTTAAACGGATCTGGTGTCTTAGGTGTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82549395 50 + 85787240 gggacgggtttttaatgcacatttaaacagatctggtgtcttaggtgttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14231871 50 - 49578535 GGGATGGGCTTTTAATGCATGTTTAAATGGATCTGGTGTCCTAGGTGTTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36379313 745 + 80974532 I a score=2118914.000000 s hg38.chr1_KI270759v1_alt 222187 710 + 425601 acagttcttttaatttatgtatt---aagcccagtttccataattgcatac--taggtggaact-tag-gaaaaggcaagaagctattaagtttccCTGGTACTAAGCAGGCCTGGGGGTGGGCAGATCAGGCCAGGAACATAAAGACCTGCAGTCAGGGAGCATCCGATAAGAACGGATTGATGGTCAAAAGGTCAGCTGGCACAGGGAAAAGTACGTGTGCACCTAAGTGCAGATGAAAAAGAA--------AGATCCACCCACACTGGCGCCG-AGGCTTGCAAGTGGATGTCTGGCAAGCAAGCAGAAGCCGAGATGC---AGATCAGGAAGCTAAAATAAAGAAGCTGGGGCATCTGGGAAGACCGAGACCCAGGGCTCCGCACAGGCTAAACAGCAGGAAGAAGAGCGAGTAGAATTGGGGTATAGGCGTGGCCAGGTCATCAGTTACCCAGGTGCACGGCGGCTGTCAGGAGGTCAGGCAG--CAGGCAAAACTCTGTT-CACAGGTA-GGATAGTGTGAGGGA-----------------TCCTGCCCGCTGTGCTTTCTCAAGTAGGGACTTTTTACCTCTCATTGTC---------------CAACGTACTTC-------------------------------------TGCTTTTC--------TCCTCCCTGATGAAGATCTTGTG-------ACTGTGTACTGGCAGGTTGGAGCCCACCCCTCCAGGACAGCAGGGAGCAAAGGAAGGGTAGCTTTGTAGGTGTGGGTGGAGATAAATATTCATGCATGGGCAATGAAGCAG s panTro4.chr1 224976813 714 + 228333871 ACAGTTCTTTTAATTTATGTATT---AAGCCCAGTTTCCATAATTGCATAC--TAGGTGGGACT-TAG-GAAAAGGCAAGAAGCTATTAAGTTTCCCTGGTACTAAGCAGGCCTGGGGGTGGGCAGATCAGGCCAGGAACATAAAGATCTGTAGTCAGGGAGCATCTGATAAGAACGGATTGATGGTCAAAAGGTCAGCTGGCACAGGGAAAAGTACGTGTGCACCTAAGTGCAGATGAAAAAGAAAGTC----AGATCCACCCACACTGGCGCCG-AGGCTTGCAAGTGGATGTCTGGCAAGCAAGCAGAAGCCGAGATGC---AGATCGGGAAGCTAAAATAAGGAAGCTGGGGCATCTGGGAAGACCGAGACACAGGGCTCCGCACAGGCTAAACAGCAGGAAGAAGAGCGAGTAGAATTGGGGTACAGGTGTGGCCAGGTCATCAGTTACCCAGGTGCACGGCCGCTGTCAGGAGGTCAGGCAG--CAGGCAAAACTCTGTT-CACAGGTA-GGATAGTGTGAGGGA-----------------TCCTGCCCGCTGTGCTTTCTCAAGTAGGGACTTCTTACCTCTCATTGTC---------------CAACGTACTTC-------------------------------------TGCTTTTC--------TCCTCCCTGATGAAGATCTTGTG-------ACTGTGTACTGGCAGGTTGGAGCCCACCCCTCCAGGACAGCAGGGAGCAAAGGAAGGGTAGCTCTGTAGGTGTGGGTGGAGATAAATATTCATGCATGGGCAATGAAGCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226338739 714 - 229942017 ACAGTTCTTTTAATTTATGTATT---AAGCCCAGTTTCCATAATTGCACAC--TAGGTGGGACT-TAG-GAAAAGGCAAGAAGCTATTAAGTTTCCCTGTTACTAAGCAGGCTTGAGGCTGGGCAGATCAGGCCAGGAACATAAAGATCTGCAGTCAGGGAGCATCTGATAAGAACGGATTGATGGTCAAAAGGTCAGCTGGCACAGGGAAAAGTACATGTGCACCTAAGTGCAGATGAAAAAGAAGGTC----AGATCCACCCACACTGGCGCCG-AGGCTTGCAAGTGTATGTCTGGCAAGCAAGCAGAAGCCGAGATGC---AGATCAGGAAGCTAAAATAAGGAAACTGGGGCATCTGGGAAGACCGAGACACAGGGCTCCGCACAGGCTAAACAGCAGGAACAAGAGTGAGTAGAATTGGGGTATAGGTGTGGCCAGGTCATCAGTTACCCAGGTGCACGGCCGCTGTCAGGAGGTCAGGCAG--CAGGCAAAACTCTGTT-CACAGGTA-GGATAGTGCGAGGGA-----------------TCCTGCCCGCTGTGCTTTCTCAAGTAGGGACTTTTTACCTCTCATTGTC---------------CAACGTACTTC-------------------------------------TGCTTTTC--------TCCTCCCTGATGAAGTTCTTGTG-------ACTGTGTACTGGCAGGTTGGAGCCCACCCCTCCAGGACAGCAGGGAGCAAAGGAAGGGTAGCTTTGTAGGTGTGGGTGGAGATAAATACTGATGCATGGGCAATAAAGCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140227498 723 - 143122389 ACAGTTCTTTTAATTTATGTATT---AAGCCCAGTTTCCATAATTGCACAC--TAGGTGGGACTATAGAGAAAAGACAAGAAGCTATTAAGTTTCCCTGGTACTAAGCAGGCATGGGGCTGGGCAGATCAGGCCAGGAACATAAAGATCTGCAGTCAGGGAGCATCTGATAAGCACGGATTAATGGTCAAAAGGTCAGCTGGCACAGGGAAAAGTATGTGTGCACCTAAGTGCAGATGAAAAAGAAAGTC----AGATCCACCCACACCGGCACTG-AGGCTTGCAAGTGGATGTCTGGCAAGCAAGCAGAAGCCGAGATGC---AGATCAGGAAGCTACAATAAGGAAGCTGGGGCATCTGGGAAGACCGAGACACAGGGCTCCGCACAGGCTACACAGCAGGAACAAGAGCGAGTAGAATTGGGGTATAGGTGTGGCCGGGTCATCAGTTACCCAGGTGCACGGCCGCTGTCAGAAGGCCAGGCAG--CAGGCAAAACTCTGTT-CACAGGTA-GGGTAGTGTGAGGGA-----------------TCCTGCCTGCTGTGCTTTCTCAGGTAGGGACTTTTTACCTCTCACTGTC---------------CAACGTACTTC-------------------------------------TGCTTTTC--------TCCTCCCTGATGAAGTTCCTGTGACTGTGTACTGTGTACTGGCAAGTTGGAGCCCAGCCCTCCAGGACTGCAGGGAGCAAAGGAAGAGGAGCTTTGCAGGTGTGGGTGGAGATAAATATTGATGCATGGGCAATAAAGCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16938233 713 - 229590362 acagttcttttaatttatgtatt---aagcccagtttgcatgattgcacactataggtgggact-tag-gaaggggcaagaagctactaagtttccctggtacaaagcaggcttgggGCTGGGCAGATCAGGCCAGGAACATGGAGATCTGCAGTCAGGGAGCATCGGATAAGAGAGGATTGATGGTCAAAAGGTCAGATGGCACAGGGAAAAGGACATGTGCACCTAAGTGCAGGTGAAAAAGAAAGTCAGGGAGA-CCACCCGCGCTGGCTCTG-AGGCTTGCAAGTGGATGTCAGGCAAGCAATGAGAAGCCAAGATGC---AGATCAGGAAGCTAAAATAAGGAAGCTGGGGCATCTGGGAAGACCGAGACGCAAGGCTCCGCACAGGCTAAACAGCAGGAACAAGAGCA---AGAACTGGGGTATAGGTGTGGCCA-GTCATCAGTTACCCAGGTGCACAGCCACTGTCAGGAGGTCAGGCAG-------------------CACAGGTA-GGATAGTGTGAGGGA-----------------TCCTGCCCGCTGTGCTTTCTCAGGTAGGGAATGTTTACCTCTCACTGTCCAGGGAATCTGTATTCAACGTACTTC-------------------------------------CACTTTTC--------TCCTCCCTGCTGAAGTT-TTGTG-------ACTGGGAACTGGCAGGTGGGAGCCCACCCCTCCAGGACAGCAGGGAGAAAAGGAAGGGTAGCTTGGTAGGTGTGGGTGGAGATAAACACTGATGCCCGGGCAATAAAGCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223700902 713 - 227556264 acagttcttTTAATTTATGTATT---AAGCCCAGTTTGCATGATTGCACACTATAGGTGGGACT-TAG-GAAGGGGCAAGAAGCTACTAAGTTTCCCTGGTACAAAGCAGGCTTGGGGCTGGGCAGATCAGGCCAGGAACATGGAGATCTGCAGTCAGGGAGCATCGGATAAGAGAGGATTGATGGTCAAAAGGTCAGATGGCACAGGGAAAAGGACATGTGCACCTAAGTGCAGGTGAAAAAGAAAGTCAGGGAGA-CCACCCGCGCTGGCTCTG-AGGCTTGCAAGTGGATGTCAGGCAAGCAATGAGAAGCCAAGATGC---AGATCAGGAAGCTAAAATAAGGAAGCTGGGGCATCTGGGAAGACCGAGATGCAAGGCTCCGCACAGGCTAAACAGCAGGAACAAGAGCA---AGAATTGGGGTATAGGTGTGGCCA-GTCATCAGTTACCCAGGTGCACAGCCACTGTCAGGAGGTCAGGCAG-------------------CACAGGTA-GGATAGTGTGAGGGA-----------------TCCTGCCTGCTGTGCTTTCTCAGGTAGGGAATGTTTACCTCTCACTGTCCAGGGAATCTGTATTCAACGTACTTC-------------------------------------CACTTTTC--------TCCTCCCTGCTGAAGTT-TTGTG-------ACTGGGAACTGGCAGGTGGGAGCCCACCCCTCCAGGACAGCAGGGAGAAAAGGAAGGGTAGCTTGGTAGGTGTGGGTGGAGATAAACACTGATGCCCGGGCAATAAAGCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16751469 714 - 220367699 ACAgttcttttaatttatgtatt---aagCCCAGTTTGCATAATTGCACACTATAGGTGGGACT-TAG-GAAGGGGCAAGAAGCTACTAAGTTTCCCTGGTACAAAGCAGGCTTGGGGCTGGGCAGATCAGGCCAGGAACATGAAGATCTGCAGTCAGGGAGCATCGGATAAGAGAGGATTGATGGTCAAAAGGTCAGATGGCACAGGGAAAAGGACATGTGCACCTAAGTGCAGGTGAAAAAGAAAGTCAGGGAGATCCACCCGCGCTGGCTCTG-AGGCTTGCAAGTGGATGTCAGGCAAGCAATGAGAAGCCAAGATGC---AGATCAGGAAGCTAAAATAAGGAAGCTGGGGCATCTGGGAAGACCGAGACGCAAGGCTCCGCACAGGCTAAACAGCAGGAACAAGAGCA---AGAATTGGGGTATAGGTGTGGCCA-GTCATCAGTTACCCAGGTGCACAGCCACTGTCAGGAGGTCAGGCAG-------------------CACAGGTA-GGGTAGTGTGAGGGA-----------------TCCTGCCCGCTGTGCTTTCTCAGGTAGGGAATGTTTACCTCCCACTGTCCAGGGAATCTGTATTCAACGTACTTC-------------------------------------CACTTTTC--------TCCTCCCTGCTGAAGTT-TTGTG-------ACTGGGAACTGGCAGGTGGGAGCCCACCCCTCCAGGACagcagggagaaaaggaagggtAGCTTGGTAGGTGTGGGTGGAGATAAACACTGATGCCCGGGCAATAAAGCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82549445 730 + 85787240 acagttcttTTAATTTATGTATT---AAGCCCAGTTTGCATAATTGCACACTATAGGTGGGACT-TAG-GAAGGGGCAAGAAGCTACTAAGTTTCCCTGGTACAAAGCAGGCTTGGGGCTGGGCAGATCAGGCCAGGAAC-TGAAGATCTGCAGTCAGGGAGCATCGGATAAGAAAGGATTGATGGTCAAAAGGTCAGATGGCACAGGGAAAAGGACATGTGCACCTAAATGCAGGCGAAAAAGAAAGTCAGGGAGATCCACCCGCGCTGGCTCTG-AGGCTTGCAAGTGGATCTCAGGCAAGCAATGAGAAGCCAAGATGC---AGATCAGGAAGCTAAAATAAGGAAGCTGGGGCATCTGGGAAGACCGAGACGCAAGGCTCCGCACAGGCTAAACAGCAGGAACAAGAGCA---AGAACTGGGGTATGGGTGTGGCCA-GTCATCAGTTACCCAGGTGCACAGCCACTGTCAGGAGGTCAGGCAG--CAGGCAACACTCCGTTTCACAGGTA-GCATAGTGTGAGGGA-----------------TGCTGCACGCTGTGCTTTCTCAGGTAGGGAATGTTTACCTCTCACTGTTCAGGGACTCTGTATTCAACGTACTTC-------------------------------------CGCTTTTC--------TCCTCCCTGCTGAAGTT-TTGTG-------ACTGGGAACTGGCAGGTGGGAGCCCACCCCTCCAGGACAGCAGGGAGAAAAGGAAGGGTAGCTTGGTAGGTGTGGGTGGAGATAAACACTGATGCCTGGGCAATAAAGCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14231921 773 - 49578535 ACAGTTCTTTTAATTTATGTATT---AAGCCCAGTTTGTGTAATTGCATAG--CACGTGGGACT-TAG-GGAGAGGCAAGAAGCTACCAAGTCTCCCTGGTACTAAGCAGGCTTGGGGCTGGGCAGATCAGGCCAGGAACAGAAAGATCTGCAGTCAGAGAGCTTCTGGTAAGAAAGGATTGATGGTCAGAAGGCCAGTTGGCACAGGGAAAAGTCCGTGTGCATCTAAGCACAGATAAAAAAGCCAGTCAGGGAGATCAGCCCACGCTGGCGCTG-AGGCTCGCAAGTGGGCGTCGGGCAGGCAAGCAGAAGTCAAGATGC---AGCTCAGGAAACCAAAAGCAGGAAGCTGGGGCATCTGGGAAGACCGAGACACAGGGCTCAGCACAGGCTAAACAGCAGGAACAGGAGTGGATCGAA-TGGGGTGCAAGTGTGGCTAGGTCGCCAGTTACCCAGATGCACGGCCGCAGTCAGGAGGTCAGGCAG--CAGCAAAACCCCGCTT-CACAGGTACGGACAGTGCGAGTGA-----------------CCCTGCCCGCTGTGCTTTCTCAAGTAGGGATTTTTTACCTCTCACTGTCCGGGGAATTTGTATTCAATGTACTTCAAGCAGACTGCCATGGAGGGACACCCACGGACGGCTGTGCTCCTCATGCTGTTTCCTCCCCGATGAAGTTCTTAGG-------ACTGTGTACTGGCAGGTTGGCGTCCACCCCT-AAGTACAGCAGGGAGCCGAGGAAGGGCAGCTTGGTAGGTGT--GTCGGGGTAA--ACTGATGCCTGGGCAATAAAGCAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36380058 653 + 80974532 ACAGTTCTTTTAATTTATGTATTATCAGGCCCAGCTTGCA-------------AAGGTATGGCT-CT--GAAGGAGCA--TACCTGCATAGTTTCCCTGGTACTAAGCAGGCTTG-GGCTGAGCAGATCAGGGCAGAGA--GAAAGAGCTGCAGACAGAAAGCACCTGGTCAGAG-GGATTAATGACCAGAAGTTCAGCTAGCACCCAGAAAAGTGTATAAGGACCTACGTGCAACTATGGATGAAAGCTGGGGAGGTCAACTCAGGCTGGAGCAGAAGACCTATAAGCAGAAGTCAAGCTGACAAGCAGAAGCTAGGAGGCAGGAGACCAGGAAGCCAGGCTA----------GGAGTCGAGGAAGACCAACACCTGGGGCTTGGCTCAGGTTCCATAACAGGAGCAAG-------------GAGGT---------GCTAGGTCATCAG--ACCCAGGCACAAGGTCCCTGGTACCAGGTCAGACAGCCCATTCTGTGTGTGCTC-CTTACCTG-GGATCGTGCAGGGCATCTGAGGTCAACGGATGTCCAGACTGCTGTGCTCT------------------------------------------------------TTC-------------------------------------TGGCTTCC--------TCCTCTCTGATAACATTCTCATG-------AGTGTGTATCAGCAGGTTGGAGCCACACCCCCTAGGAGAGTGGGGAATAAAAGAAGTGTAGCTGTGTAGGTGTGTGCAGAGAGAAATAACAACGTGCAGGTAATGAGGAAG i canFam3.chr7 I 745 I 10 e mm10.chr1 178812810 1520 + 195471971 I a score=88052.000000 s hg38.chr1_KI270759v1_alt 222897 29 + 425601 CTCTAAGCTATGGAATCACATGTCAACCC s panTro4.chr1 224977527 29 + 228333871 CTCTAAGCTATGGAATCACATGTCAACAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226339453 29 - 229942017 CTCTAAGCTATGGAATCACATGTCAACAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140228221 29 - 143122389 CTCTAAGCTATGGAATCACATGTCAACAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16938946 29 - 229590362 CTCTAAGCTATGGAATCACATGTCAACAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223701615 29 - 227556264 CTCTAAGCTATGGAATCACATGTCAACAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16752183 29 - 220367699 CTCTAAGCTATGGAATCACATGTCAACAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82550175 29 + 85787240 CTCTAAGCTATAGAATCACATGTCAACAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14232694 29 - 49578535 CTGTAAGCTCTGGAGTCACGTGTTAACAA i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36380711 10 + 80974532 I a score=186899.000000 s hg38.chr1_KI270759v1_alt 222926 54 + 425601 ATATGTCACGTGGCATCAAAGGCAGTTTATACATTGGTAAAATGTTCCTTTGAA s panTro4.chr1 224977556 54 + 228333871 ATATGTCACGTGGCATCAAAGGCAGTTTATACATTGGTAAAATGTTCCTTTGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226339482 54 - 229942017 ATATGTCACATGGCATCAAAGGCAGTTTATACATTGGTAATATGTTCCTTTGAA i ponAbe2.chr1 C 0 I 4894 s nomLeu3.chr5 140228250 54 - 143122389 ATACGTCACATGGCATCAAAGGCAGTTTATACATTGGTAATATGTTCCTTTGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16938975 54 - 229590362 GTATGTCACACGGCATCAAAGGCAGTTTATACATTGGTAATATGTTCCTTTGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223701644 54 - 227556264 GTATGTCACACGGCATCAAAGGCAGTTTATACATTGGTAATATGTTCCTTTGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16752212 54 - 220367699 GTATGTCACACGGCATCAAAGGCAGTTTATACATTGGTAATATGTTCCTTTGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82550204 54 + 85787240 GTATGTCACATGGCATCAAAGGCAGTTTATACATTGGTAATATGTTCCTTTGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14232723 53 - 49578535 GTATGTCGCATGACATCCAAGGCAGCTTATACACTGGTAACAT-TTCCTCTGAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36380721 54 + 80974532 GTACATCACATGGCATCGAAGGCAGTTGACCCATCGGCAGGGTGTTCCTTTAGA i canFam3.chr7 I 10 C 0 e mm10.chr1 178812810 1520 + 195471971 I a score=1219.000000 s hg38.chr1_KI270759v1_alt 222980 1 + 425601 C s panTro4.chr1 224977610 1 + 228333871 C i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140228304 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16939029 1 - 229590362 C i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223701698 1 - 227556264 C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16752266 1 - 220367699 C i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82550258 1 + 85787240 T i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36380775 1 + 80974532 T i canFam3.chr7 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e calJac3.chr19 14232776 0 - 49578535 C e ponAbe2.chr1 226339536 4894 - 229942017 I a score=176777.000000 s hg38.chr1_KI270759v1_alt 222981 50 + 425601 TTTTCTATTCCACAGGAATTGGGAATAAGTTTTGGGTTATTTCATCTTCC s panTro4.chr1 224977611 50 + 228333871 TTTTCTATTCCACAGGAATTGGGAATAAGTTTTGGGTTATTTCATCTTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226344430 50 - 229942017 TTTTCTATTCCACAGGAATTGGGAATAAGTTTTGGGTTATTTCATCTTCC i ponAbe2.chr1 I 4894 C 0 s nomLeu3.chr5 140228305 50 - 143122389 TTTTCTATTCCACAGGAATTGGGAATGAGTTTTGGGTTATTTCATCTTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16939030 50 - 229590362 TTTTCTGTTCCACAGGAATTGGGAATATGTTTTGGGTTATTTCATCTTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223701699 50 - 227556264 TTTTCTGTTCCACAGGAATTGGGAATATGTTTTGGGTTATTTCATCTTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16752267 50 - 220367699 TTTTCTGTTCCACAGGAATTGGGAATATGTTTTGGGTTATTTCATCTTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82550259 50 + 85787240 TTTTCTATTCTACAGGAATTGGGAATATGTTTTGGGTTATTTCATCTTCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14232776 49 - 49578535 -TTTCTACTCCACAGGAATTGTGAATAAGTTTCGGGTGATTTCATCTTCC i calJac3.chr19 C 0 I 306 s canFam3.chr7 36380776 50 + 80974532 CTTTCAGTTACACGTGAGTGGAGGATTGGTTTTGGGTTACTCCATCTTCC i canFam3.chr7 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I a score=24463.000000 s hg38.chr1_KI270759v1_alt 223031 9 + 425601 AGTGTCCTT s panTro4.chr1 224977661 9 + 228333871 AGTGTCCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226344480 9 - 229942017 AACGTCCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140228355 9 - 143122389 AATGTCCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16939080 9 - 229590362 AATGTCCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223701749 9 - 227556264 AATGTCCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16752317 9 - 220367699 AATGTCCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82550309 9 + 85787240 AATGTCCTT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36380826 9 + 80974532 AGTGTTGTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e calJac3.chr19 14232825 306 - 49578535 I a score=1674060.000000 s hg38.chr1_KI270759v1_alt 223040 505 + 425601 AAAAATGTGGAGCATGCTCTCTCTTAAAAATATGAATGGTTGCTGTGGCTTAGAGCAAGTCGCCACCTTCCCGAGGTCATCCAA--CTCTCAGAAACAGAACTTCTCTGT-TTTAATGAGTGTTTTTCTCTAGATCTTGACCTAgaacttgttgtctaggcagtatctgggtctgacttactaggtttgctggacagacagaaataga-aaagtgcaatgagacaatcgatatgttcttagg-tgcccacagagtgtggcaccaacttgtcaagttctggacaaaattagattcattagtgcagaagtcctcaaccttctcttgggtcctgaagcccagc-----ttttgcagatggcgtcttagtcattagtaaggccgctccatcggagtccccgtcatacaaaatattaaaggaagctgtgaagatcggttgcag-tgtctgctatcctgctgtcgtctggccagaggtgagccgagactgtggggcagcggggtactgagcagctgctgtat s panTro4.chr1 224977670 505 + 228333871 AAAAATGTGGAGCATGCTCTCTCTTAAAAATATGAATGGTTGCTGTGGCTTAGAGCAAGTGGCCACCTTCCCGAGGTCATCCAA--CTCTCAGAAACAGAACTTCTCTGT-TTTAATGAGTGTTCTTCTCTAGATCTTGACCTAGAACTTGTTGTCTAGGCAGTATTTGGGTCTGACTTACTAGGTTTGCTGGACAGACAGAAATAGA-AAAGTGCAATGAGACAATCGATATGTTCTTAGG-TGCCCACAGAGTGTGGCACCAACTTGTCAAGTTCTGGACAAAATTAGATTCATTAGTGCAGAAGTCCTCAACCTTCTCTTGGGTCCTGAAGCCCAGC-----TTTTGCAGATGGCGTCTTAGTCATTAGTAAGGCCGCTCCATCAGAGTCCCCGTCATACAAAATATTAAAGGAAGCTGTGAAGATCGGTTGCAG-TGTCTGCTATCCTGCTGTCGTCTGGCCAGAGGTGAGCCGAGACTGTGGggcagcggggtactgagcagctgctgtat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226344489 506 - 229942017 AAAAATGTAGAGCATGCTCTCTCTTAAAAATATGGATGATTGCTGTGGCTTAAAGCAAGTTGCCACCTTCCCGAGGTCATCCAA--GTCTCAGAAACAGAACTTCTCTGT-TTTAATGAGTGTTTTTCTCTAGATCTTGACCTAGAACTTGTTGTCTAGGCAGTATTTGGGTCTGACTTACTAGGTTTGCTGGACAGACAGAAATAGA-GAAGTGCAACGAGACAGTCGATATGTTCTTAGG-TGCTCATAGAGTGTGGCACCAACTTGTCAAGTTCTGGACAAAATTAGATTCATTAGTGCAGAAGTCCTCAACCTTCTCTTGGGTCCTGAAGCCCAGC-----TCTTGCAGATGGCGTCTTAGTCATTAGTAAGGCAGCTCCATCAGAGTCCCCGTCATACAAAATATTAAAGGAAGCTGCGAAGATCTGTTGCAGTTGTCTGCTATCCTGCTGTTGTCTGGCCAGAGGTGAGCCGAGACTGGGGGGCAGCGGGGTACTGAGCAGCTGCTGTAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140228364 504 - 143122389 AAAAACGTGGAGCATGCTCTCTCTTAAAAATTCGAATGATTGCTGTGGCTTAAAGCAAGTTGCCACCTTCCCGAGGTCATCCAA--CTCTCAGAAACAGAACTTCTCTGT-TTTAATGAGTGTTTTTCTCTAGATCTTGACCTAGAACTTGTTGTCTAGGCAGTATTTGGGTCTGACTTACTAGGTTTGCTGGACAGACAGAAATAGA-AAAGTGCAATGAGACAGTCGATATGTTCTTAGG-TGCCCATAGAGTGTGGCACCAACTTGTCAAGTTCTGGACAAAATTAGATTCATTCGTGCAGAAGTCCTCAACTTTCTCTTGGGTCCTGAAGCCCAGC-----TCTTG-AGATGGCGTCTTAGTCATTAGTAAGGCAGCTCCATCAGAGTCCCTGTCATACAAAATATTAAAGGAAGCTGCGAAGATCGGTTGCAG-TGTCTGCTATCCTGCTGTCATCTGGCCAGAGGCGAGCTGAGACTGGAGggcagcggggtactgagcagctgctgtat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16939089 505 - 229590362 AAAAATGTGGAGCGTGCTCTCTCTTAAAAATATGAGTGATTGCTGTGGGTTAAAGCAAGTTGCCACCTTCCTGAGGTCATCCAA--GTCTCAGAAACAGAACTTCTCTGT-TTTAATGAGTGTTTTTCTCTAGATCTTGACCTAGAACTTGTTGTTTAGGCAGTATTTGGGTCTGACTTACTAGGTTTGTTGGACAGACAGAAATAGA-AAAGTGCAATGAGAAAGTCGATATGTTCTTAGG-TGCCCATAGAGTGTGGCACCAACTTGTCAAGTTCTGGACGAAATTAGATTCGTTAGTACACAAGTCCGTAACCTTCTCTTGGGTCCTGAAGCCCAGC-----TCTTGCAGATGGCGTCTTAGTCATTAGTAAGGCAGCTCCATCAGAGTCCCTGTCATACAAACTATTAAAGGAAGCTGCGAAGATCAGCTGCAG-TGGCTGCTATCCTGCTGTCATCTGGCCAGAGGTGAGCTGAGACCAGGGggcagcggggtactgagcagctgctgtat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223701758 505 - 227556264 AAAAATGTGGAGCGTGCTCTCTCTTAAAAATATGAGTGATTGCTGTGGGTTAAAGCAAGTTGCCACCTTCCTGAGGTCATCCAA--GTCTCAGAAACAGAACTTCTCTGT-TTTAATGAGTGTTTTTCTCTAGATCTTGACCTAGAACTTGTTGTTTAGGCAGTATTTGGGTCTGACTTACTAGGTTtgttggacagacagaaataga-aaagtgcaatgagaaagtcggtatgttcttagg-tgcccatagagtgtggcaccaacttgtcaagttctggacgaaattagattcgttagtgcacaagtccgtaaccttctcttgggtcctgaagcccagc-----tcttgcagatggcgtcttagtcattagtaaggcagctccatcagagtccctgtcatacaaactattaaaGGAAGCTGCGAAGATCGGCTGCAG-TGGCTGCTATCCTGCTGTCATCTggccagaggtgagctgagaccagggggcagcggggtactgagcagctgctgtat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16752326 505 - 220367699 AAAAATGTGGAGCGTGCTCTCTCTTAAAAATGTGAGTGATTGCTGTGGGTTAAAGCAAGTTGCCACCTTCCTGAGGTCATCCAA--GTCTCAGAAACAGAACTTCTTCGT-TTTAATGAGTGTTTTTCTCTAGATCTTGACCTAGAACTTGTTGTTTAGGCAGTATTTGGGTCTGACTTACTAGGTTTGTTGGacagacagaaataga-aaagtgCAATGAGAAAGTCGATACGTTCTTAGG-TGCCCATAGAGTGTGGCACCAACTTGTCAAGTTCTGGACGAAATTAGATTCGTTAGTGCACAAGTCCGTAACCTTCTCTTGGGTCCTGAAGCCCAGC-----TCTTGCAGATGGCGTCTTAGTCATTAGTAAGGCAGCTCCATCAGAGTCCCTGTCATACAAACTATTAAAGGAAGCTGCGAAGATCGGCTGCAG-TGGCTGCTATCCTGCTGTCATCTGGCCAGAGGTGAGCTGAGACCAGGGGGCAGCGGGGTACTGAGCAGCTGCTGTAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82550318 500 + 85787240 AAAAACGTGGAGCGTGCTCTGTCTTAAAAATATGAGTGATTGCTGTGGGTTAAAGCAAGATGCCACCTTCCTGAGGTCATCCAA--GTCTCAGAAACAGAACTTCTCTGT-TTTAATGAGTGTTTTTCTCTAGATCTTGACCTAGAACTtgttgtttaggcagtatttgggtctg----actaggtttgttggacagacagaaataga-aaaatgcaatgggaaagtcgatatgttcttagg-tgcccatagagtgtggcaccaacttgtcaagttctggacgaaattagattcgttagtgcacaagtccgtaaccttctcttgggtcctgaagcccagc-----tcttgcagatggcgtcttagtcattagtaaggcagctccatcagagtccctgtcatacaaaatattaaaGGAAGCTGC-AAGATCGGCTGCAG-TGGCTGCTATCCTGCTGTCATCTggccagaggtgagctgagaccagggggcagcggggtactgagcagctgctgtat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14233131 496 - 49578535 aaaaGAGGGGAGCATACTCCCTCTTAAAAATGTGAATGATTGCTGAGGCCTAAAGCAAGCTGCCCACTTCCTGAGGCCATCCGGGTGTCTCAG-AATGGAACTTCGCTGT-TTTAAGGAGCGTTTTTCTCTAGACCTTGACTTAGAACTTGTTGTCCAGGCAGTATTTGGGTCTGACTGACTAGGTTTGCTGGACAGACAGAAATAGA-CAAGTGCAATAAGAAAGTC-AGATGTCCTTAGG-TGCCCGTAGTGTGCGGCACCAACTTGTCAACTTCTGGACGAAATTAGATTCATGAGTGCAGAAGTCCTCAGCCTTCTCCTGGGTCCCGAAAGCCAGC-----TCTTGCAGATGGCGTCTTAGTCATTAGTCAGG---------CAGAGTCCCTGTCATACGGAATATTCAAGGAAGCTGCGAAGATCGGTTGCAA-TGTCTGCTGTCCTGCTGTCATCTGGCCAGAGGTGAGCCGAGACTGGGGggcagcgggatactgagcgactgctgcgt i calJac3.chr19 I 306 C 0 s canFam3.chr7 36380835 497 + 80974532 GGAAGAGTA-AGAGTGCTCTCTCTC-AAGATATGACATGTTGCAGAAACTTGAAGCAAGATG-CATCTTTCCGAGGTCATTCA---GTCTCCGAAACAGAACTTGCCAGTCTCTAGTGA--GTTTCCCTCCAGGTCCTACCCTGGAGTTTCTTGTCTTGGCAGCATGTGGGTCTGAC--ATGAGGTGTGCTGGACATGCAGAGATAGAGAAAAGGAAACACAGAAGTCCACGTGTCCCCAGGCTGCCTATAGAAAGTGTCAATGACTTGTCAAATTTTGGACAA------GTTCACTAGAGCAGAGGTCCCCAGCCTTCTTTTCAGCCCAGGGACCCCACTGGGGTCCTGCATATGGCACCCTGGTTGTTGGTGAAGCT-CTCCATCAGAGATCCCCTCATACAGAATATTAAAGGAAGCCAAGAAGATCGGCCACAG-TGTCTGGTGTCCTGCTTCCAGGCAGCCAGAAGTGAGCAGCGCTTGGTGGATGGTGGGTTG-TGAGCAGCACCTGCAT i canFam3.chr7 C 0 I 3 e mm10.chr1 178812810 1520 + 195471971 I a score=113275.000000 s hg38.chr1_KI270759v1_alt 223545 38 + 425601 aatgagccgagaggggttaacccctggcaaggcaagca s panTro4.chr1 224978175 38 + 228333871 aatgagccgagaggggttaacccctggcaaggcaagta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226344995 38 - 229942017 AATGAGCCGAGAGGGGTTAACCCCTGGCAAGGCAAGTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140228868 38 - 143122389 aatgagccgagaggggttaacccctggcaaggcaagta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16939594 38 - 229590362 aatgagccgagaggggttaaccactggcaaggcaagtg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223702263 37 - 227556264 aatgagccgag-ggggttaaccgctggcaaggcaagtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16752831 38 - 220367699 AATGAGCCGAGAGGGGTTAACCGCTGGCAAGGCAAGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82550818 38 + 85787240 agtgagccgagaggggttaaccgctggcaaggcaagtg i chlSab2.chr25 C 0 I 315 s calJac3.chr19 14233627 38 - 49578535 aatgagctgagaggagttaacccctggcaagacaagga i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36381332 3 + 80974532 I a score=807035.000000 s hg38.chr1_KI270759v1_alt 223583 282 + 425601 gaagagtcattcttaacatgcttagaatcccaatattcattgcagcagcttcaccaa-ccctgaaaaaccacagcatcagatggtttcttagtaaatacacttatcagaaacagaggcagagggtgcttccctttgaacTTCTGAGACAAAAGCCCCCAGCAAGG-CATGGATTCTGCCACCGACGGAGTATTTATTTGGTCTTTCTAAAATCCAGATCTCTGCAGCCAGGAAATAACAAACTCTTGCTTTGTACTTCTGTTTAGCCTTCC-ATGCCAATGACTA-- s panTro4.chr1 224978213 283 + 228333871 gaagaGTCATTCTTAGCATGCTTAGAATCCCAATATTCATTGCAGCAGCTTCACCAAGCCCTGAGAAACCACAGCATCAGATGGTTTCTTAGTAAATACACTTATCAGAAACAGAGGCAGAGGGTGCTTCCCTTTGAACTTCTGAGACAAAAGCCCCCAGCAAGG-CGTGGATTCTGCCACCGACGGAGTATTTCTTTGGTCTTTCTAAAATCCAGATCTCTGCAGCCAGGAAATAACAAACTCTTGCTTTGTACTTCTGTTTAGCCTTCC-ATGCCAATGACta-- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226345033 282 - 229942017 GAAGAGTCATTCTTAACATGCTTTGAATCCCAATATTCATTACAGCAGCTTCACCAAGCCCTGAGAAACCACAGCATCAGATGGTTTCTCAGTAAATACACTTATCAGAAACAGAGGCAGAGGGTGCTTCCCTTTGAACTTCTGAGACAAAAGCCCTCAGCAAGG-CGTGGATTCTGCCACCGACAGAGTATTTATTTGGTCTTTC-AAAATCCGGATCTCTGCAGCCGGGAAATAACAAACTCATGCTTTATACTTCTGTTTAGCCTTCC-ATGCCAATGACta-- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140228906 280 - 143122389 gaagagccattcttaacatgctttgaatcccaatattcaTTGCAGCAGCTTCACCAAGCCCCAAGAAACCACAGCATCAGATGGTTTCTCAGTAAATACACTTATCAGAGACAGAGGCAGAGGGTGC-TCCCTTTGAACTTCTGAGACAAAAGCCCCCAGCAAGG-CGTGGATTCTGCCACCGACAGAGTATTTATTTGGTCTTTC-AAAATCT-GATCTCTGCAGCCAGGAAATAACAAACTCATGCTTTGTACTTCTGTTTAGCCTTCC-ATGCCAATGACTA-- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16939632 283 - 229590362 gaagagtcattcttaacatgctttgaatcccaatattcaTTGCAGCAGCTTCACCAAGCCCTGAGAAACCACAGCATCAGATGGTTTCTCAGT-AACACACTCATCAGAAACAGAGGCCGAGGGTGCTTCCCTTTCAACTTCTGAGACAAAAACCCCCAGCAAGGCCATGGATTCTGCCACCGACAGAGTATTTATTTGGTCTTTCTAAAATCCAGATCTCCGCAGCTAGGAAATAACAAACTCATGCTTTGTACTTCTGTTTAGCCTTCC-ACGCCAGTGGCTG-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223702300 283 - 227556264 gaagagtcattcttaacatgctttgaatcccaatattcattgcagcagcttcaccaagccctgagaaaccacagcatcagatggTTTCTCAGT-AACACACTCATCAGAAACAGAGGCCGAGGGTGCTTCCCTTTCAACTTCTGAGACAAAAACCCCCAGCAAGGCCATGGATTCTGCCACCGACAGAGTATTTATTTGGTCTTTCTAAAATCCAGATCTCCGCAGCTAGGAAATAACAAACTCATGCTTTGTACTTCTGTTTAGCCTTCC-ACGCCAGTGGCTG-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16752869 283 - 220367699 GAAGAGTCATTCTTAACATGCTTTGAATCCCAATATTCATTGCAGCAGCTTCACCAAGCCCTGAGAAACCACAGCATCAGATGGTTTCTCAGT-AACACACTCATCAGAAACAGAGGCCGAGGGTGCTTCCCTTTCAACTTCTGAGACAAAAACCCCCAGCAAGGCCATGGATTCTGCCACCGACAGAGTATTTATTTGGTCTTTCTAAAATCCAGATCTCCGCAGCTAGGAAATAACAAACTCATGCTTTGTACTTCTGTTTAGCCTTCC-ACACCAAtggctg-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82551171 284 + 85787240 GAAGAGTCATTCCTAACATGCTTTGAATCCCAATATTCATTGCAGCAGCTTCACCAAGCCCTGAGAAAGCACAGCATCAGATGGTTTCTCAGT-AACACACTCATCAGAAACAGAGGCCAAGGGTGCTTCCCTTTCAACTTCTGAGAC-AAAACCCCCAGCAAGGCCATGGATTCTGCCACCGACAGAGTATTTATTTGGTCTTTCTAAAATCCAGATCTCCACAGCCAGGAAATAACAAACTCATGCTTTGTACTTCTGTTTAGCCTTCC-ATGCCAATGGCTGCT i chlSab2.chr25 I 315 C 0 s calJac3.chr19 14233665 276 - 49578535 gaagagtcatt-taaaaatgctctgaatcccagtattcaTTGCAGCAGCTTCACCAAGCCCTGAGAAACCGTAG-ATCAGATGGTTTCTCAGTAAATAC------CAGAAACAGAGGCAGAGGGCACTTCCCTTTGAACGGCTGAGATAAAAGCCCCCAGCAAGG-CATGGAGCCTGCCACTGACCGAGTATTTATTTGGTGTTTCTAAAATCCAAATCTCTGCAGCCAGGAAAGAACACACTCGTGCTTTCTACTTCCTTTTAGCCTTCCAATGCCAATGGCGa-- i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36381332 3 + 80974532 I a score=485008.000000 s hg38.chr1_KI270759v1_alt 223865 153 + 425601 TTTTTTTAATTAAATATTTTCTGCTTTATTTTTGTGTACAAAAGTGTCTATTTTCACACAGGGAACTTGGCTCAGCAAACA--TTCGTAGTTACTTGGCTTTAAACAAAGGAGAAGGTTTTACATTGAATAGCTTTTATTTAAAAAT-TGGTTTAT s panTro4.chr1 224978496 153 + 228333871 tttttttaattaaatattttCTGCTTTATTTTTGTGTACAAAAGTGTCTATTTTCACACAGGGAGCTTGGCTCAGCAAACA--TTCGTAGTTACTTGGCTTTAAACAAAGGAGAAGGTTTTACATTGAATAGCTTTTATTTAAAAAT-TGGTTTAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226345315 153 - 229942017 tttttttaattaaatattttCTGCTTTATTTTTGTGTACCAAAGTGTCTATTTTCACACAGGCAGCTTGGCTCAGCAAACA--TTCGTAGTTACTTGGCTTTAAACAAAGGAAAAGGTTTTACATTGAATAGCTTTTATATAAAAAT-TGGTTTAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140229186 153 - 143122389 TTTTTTAAATTAAATATTTTCTGCTTTATTTTTGTGTACAAAAGTGTCTATTTTCACACAGGGAGCTTGGCTCAGCAAACA--TTCATAATTACTTGGCTTTAAACAAAGGAGAAGGTTTTACATTGAATAGCTTTTTTTGAAACAT-TGGTTTAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16939915 152 - 229590362 TTTTTTAAATTAAATAGTTTCTGCTTTATTTTTGTGTATGAAAATGTCTA-TTTCACACAGGGAGCTTGGCTCAGCAGATA--TGCACAGGTACTTGGCTTTATACAAAGGAGAAGGTTTTACACTGAATAGCTTTTATTTAAAGAC-TTGTTTAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223702583 152 - 227556264 TTTTTTAAATTAAATAGTTTCTGCTTTATTTTTGTGTATGAAAATGTCTA-TTTCACACAGGGAGCTTGGCTCAGCAGATA--TGCACAGGTACTTGGCTTTATACAAAGGAGAAGGTTTTACACTGAATAGCTTTTATTTAAAGAC-TGGTTTAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16753152 152 - 220367699 ttttttaaattaaatagtttctgctttatttttgtgtatgaaaATGTCTA-TTTCACACAGGGAGCTCGGCTCAGCAGATA--TGCACAGGTACTTGGCTTTATACAAAGGAGAAGGTTTTACACTGAATAGCTTTTATTTAAAGAC-TGGTTTAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82551455 152 + 85787240 TTTTTTAAATTAAATAGTTTCTGCTTTATTTTTGTGTATGAAAATGTCTA-TTTCACACAGGGAGCTCGGCTCAGCAGCTA--TGCACAGGTACTTGGCTTTATACAAAGGAGAAGGTTTTGCACTGAATAGCTTTGATTTAAAGAC-TGGTTTAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14233941 151 - 49578535 ttttttaaattaaatattttCTGCTTGATTTTTGTGTATGGAAGTCTCTGTTTTCACAC--GGAGCTTGGCTCAGCAAACA--TTCACAGGTATTTGGCTTTAGACAAAGGAGAAGGTTTTACACTGAATAGATTTTATTTAAAAGT-TTGTTTAt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36381335 156 + 80974532 TTTTTTTAATCAAACATCTTCTGTTTTATTGGGGCATATGAAAGCATTTCTCTTCACACGAGGACCTTGGCTCAACAAGCGCTCTCATAGGTACCCGGCTTTACATAAAGGAGGAGGTTTTACCTTGAATACCTTTTGTAAAAAACCATAGTTTAT i canFam3.chr7 I 3 I 178 e mm10.chr1 178812810 1520 + 195471971 I a score=747149.000000 s hg38.chr1_KI270759v1_alt 224018 258 + 425601 actatcgaaaggaaacattgaggaaacccc-ccagggcatttggactgggcacagatttcttgaggaacaccccacaagcacaggtaaccaaagcaaaaacggacaaatgggatcacatcaggttaaaaagctgccgcacagcacaggaaac-aatcaacaaggtgaagagacaacccacagaatgggagaaaatatttgcaaactatccatctgacaagggattaatacccagaatatataaggagctcaaacaactct s panTro4.chr1 224978649 258 + 228333871 actatcaaaaggaaacattgaggaaacccc-ccagggcatttggactgggcacagatttcttgaggaacaccccacaagcacaggcaaccaaagcaaaaacggacaaatgggaccacatcaggttaaaaagctgctgcacggcacaggaaac-aatcaacaaggtgaagagacaacccacagaatgggagaaaatatttgcaaactatccatctgacaagggattaataaccaaaatatataaggagctcaaacaactct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226345468 258 - 229942017 actatcaaaaggaaacattgaggaaccccc-ccagggcatttggactgggcacagatttcttgaggaacaccccaggagcacaggcaaccaaagcaaaaacggacaaatgggatcacatcaggttaaaaagctgctgcacagcaaaggaaac-aatcaacaaggtgaagagacaacccacagaatgagagaaaatatttgcaaactgtccatctgacaagggattaataaccagaatatataagtagctcaaacaactct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140229339 256 - 143122389 actatcaaaaggaaacactgaggaaacccc-tcagggcatttggactgggcacagatttcttgaggaacaccccacgagcacaggcaaccaaagcaaaaacggacaaatgggatcacatcaggttaaaaagctgctgcacagcaaaggaaac-aatcaacaaggtgaagagacaacccgcagaatgggagaaaatatttgcaaactatctat-tgacaagggattaataaccagaatatataaggagctcaaacaact-t i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16940067 260 - 229590362 actatcaaaaggaaacacggaggaaaccccaccagggcatttggactgggtgcagatttcttaaggaacactccacgagcacaggcaaccaacacaaaaatgaacaaatgggatcacatcaagttaaaaagctgctgcatggcagaggaaacaaatcaacaaggcgaagagaccacccacagaatgggagaaaatatttgcaaactacccatctgacaagggattaataaccagaatatataaggagctcaaacaactct i rheMac3.chr1 C 0 I 253 s macFas5.chr1 223702735 260 - 227556264 actatcaaaaggaaacacggaggaaaccccaccagggcatttggactgggtgcagatttcttaaggaacactccacgagcacaggcaaccaacacaaaaatgaacaaatgggatcacatcaagttaaaaagctgctgcatggcagaggaaacaaatcaacaaggcgaagagaccacccacagaatgggagaaaatatttgcaaactacccatctgacaagggattaataaccagaatatataaggagctcaaacaactct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16753304 259 - 220367699 ACTATCAAAAGGAAATACGGAGGAAACCCC-CCAAGGCATTTGGACTGGGCACAGATTTCTTGAGGAACACTCCACGAGCACAGGCAACcaacacaaaaatgaacaaacgGGATCACGTCAAGTTAAAAAGCTGCTGCATGGCAGAGGAAACAAATCAACAAGGCGAAGAGAccacccacagaatgggagaaaatatttgcaaactacccatctgacaagggattaataaccagaatatataaggagctcaaacaactct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82551607 259 + 85787240 actatcaaaaggaaacatggaggaaacccc-ccagggcatttggactgggcacagatttcttgaggaacactccacgagcacaggcaaccaacacaaaaatgaacaaacgggatcacgtcaagttaaaaagctgatgcgtggcagaggaaacaaatcaacaaggcgaagagaccacccacagaatgggagaaaatatttgcaaactacccatctgacaagggattaataaccagaatatataaggagctcaaacaattct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14234092 255 - 49578535 actatccaatggaaacattgaggaaacccc-ccagggca-ttggactgggcaaagattttttgaggaacaccccacgagcacaggcaaccaaagcagaaatggacagatgggatcacatcacgttaaaacgctgct-cacagcaaagggagc-aatcaacacggggaggagacaa-ccatggaatggggggaaatatttgcaaactacccatctgacaagggattaataaccagaatatgtaaggagctcagacaactcc i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36381491 178 + 80974532 I a score=10390.000000 s hg38.chr1_KI270759v1_alt 224276 10 + 425601 atgg--aaaaaa s panTro4.chr1 224978907 9 + 228333871 atgg---gaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226345726 9 - 229942017 atag---aaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140229595 9 - 143122389 atag---aaaaa i nomLeu3.chr5 C 0 M 214 s macFas5.chr1 223702995 12 - 227556264 atagaaaaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16753563 9 - 220367699 atag---aaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82551866 9 + 85787240 atag---aaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14234347 8 - 49578535 atgg---gaaa- i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36381491 178 + 80974532 I e rheMac3.chr1 16940327 253 - 229590362 I a score=77089.000000 s hg38.chr1_KI270759v1_alt 224286 46 + 425601 aaatctaataatccaatttaaaaatgggcaaaagatctgaatagac s panTro4.chr1 224978916 46 + 228333871 aaatctaataatccaatttaaaaatgggcaaaagatctaaatagac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226345735 46 - 229942017 aaatctaataatctgatttaaaaatgggtaaaagatctgaatagac i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223703007 46 - 227556264 aaatctaataatccgatttaaaaatgggcccaagatctgaatagac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16753572 46 - 220367699 aaatctaataatccgaTTTAAACATGGgccaaagatctgaatagac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82551875 46 + 85787240 aaatctaataatccgatttaaacatgggcccaagatctgaatagac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14234355 46 - 49578535 aaatctaataatccaatttaaaaatgggcaaaagatatgaataggt i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36381491 178 + 80974532 I e rheMac3.chr1 16940327 253 - 229590362 I e nomLeu3.chr5 140229604 214 - 143122389 M a score=18168.000000 s hg38.chr1_KI270759v1_alt 224332 8 + 425601 atttctcg s panTro4.chr1 224978962 8 + 228333871 atttctcg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226345781 8 - 229942017 atttctca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140229819 8 - 143122389 atttctca i nomLeu3.chr5 M 214 C 0 s macFas5.chr1 223703053 8 - 227556264 atttctca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16753618 8 - 220367699 atttctca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82551921 8 + 85787240 atttctcg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14234401 8 - 49578535 atttctta i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36381491 178 + 80974532 I e rheMac3.chr1 16940327 253 - 229590362 I a score=48746.000000 s hg38.chr1_KI270759v1_alt 224340 16 + 425601 aaagaagacatacaag s panTro4.chr1 224978970 16 + 228333871 aaagaagacatacaag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226345789 16 - 229942017 aaagaagacataccag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140229827 16 - 143122389 aaagaagacatacaag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16940580 16 - 229590362 aaagaagacatacaaa i rheMac3.chr1 I 253 C 0 s macFas5.chr1 223703061 16 - 227556264 aaagaagacatacaag i macFas5.chr1 C 0 I 325 s papAnu2.chr1 16753626 16 - 220367699 aaagaagacatacaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82551929 16 + 85787240 aaagaagacatacaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14234409 16 - 49578535 agagaagacatacaaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36381491 178 + 80974532 I a score=1528833.000000 s hg38.chr1_KI270759v1_alt 224356 556 + 425601 tggcagacaggtacatgaaaaggtgctcaacatcattcattgatcatcatagaaatgcaaatcaaaactacaatgagattatcatctcaccacagttaaaatggcttttatccaaaaat-caggcaataacaaatgctggtgaggatgtggagaaaagggaaccctcatacactgtggatgggaatgtaaattagtacaaccactgtagagaacagtttggagcttcctcaaaaaactaacaattgaactaccacgcaatctagcaatggtag-------tactgggtatttatccaaaggataggaggtcagtatatcaaagaga----tagccaagctcccatgtttattgcagcactattcacaatagtcaagagttggaagcaatctaagcatccatcaatagacaaatgaataaagaaaaggtggtacatatacagaatggagtactcttcagccataaagaagaatgagatcctgccatttgcaacaacatggatggaactggaggtcattatgttaagtgaaattagcgaggcccagaaaaacagacttcacatgttttta s panTro4.chr1 224978986 523 + 228333871 tggcagacaggtacatgaaaaggtgctcagcatcattcatcgatcatcatagaaatgcaaataaaaactacaatgagattatcatctcaccccagttaaaatggcttttatctaaaaat-caggcaataacaaatgctggtgaggatgtggag-aaagggaaccctcatacactgtggatgggaatgtaaattagtacaaccactgtaaagaacagtttggagcttcctcaaaaaactaacaattgaactaccacgcaatctagcaatggtag-------tactggatatttatccaaaggataggaggtcagtatatcgaagaga----tagccaaactcccatgtttattgcagcactagtcacaacagtcaagagttggaagc--------------------------------aagaaaaggtggtacatatacagaatggagtactcttcagccataaagaagaatgagatcctgccatttgcaacaacatggatggaactggaggtccttatgttaagtgaaattagcgaggcccagaaaaacaaacttcacatgttttta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226345805 557 - 229942017 tggcaaacaggtacatgaaaaggtactcaacatcattcattgatcatcatagaaatgcaaatcaaaactacaatgagattatcatctcacctcagttaaaatggcttacatccaaaaagacaggcaataagaaatgctggtgaggatgtggagaaaaaagaaccctcgtacactgtgggtgggaatgtaaattagtacaaccactgtagataacagtttggagcttcctcaaaaaactaacaattgaactaccacgcagtctagcaatggtag-------tactgggtatttatccaaaggataggaggtcagtatatcaaagaga----tagccaagctcccatgtttattgcagcactattcacaatagtcaagagttggaagcaatctaagcatccatcagtagacaaatgaataaagaaaaggtggtacatatacagaatggagtactattcagccataaagaagaatgagatcctgccatttgcaacaacatggatggaactggaggtcattatgttaagtgaaattagcgagacccggaaaaacaaacttcacatgttttca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140229843 554 - 143122389 tggcaaacaggtgcatgaaaaggcgttcaacatcattcattgatcatcatagaaatgcaaatcaaaactacaatgagattatcatctcaccccagttcaaatggcttttatccaaaaat-caggcaataagaaatgctggtgaggatgtggagaaaagggaa-ctttgtacactgtgggtgggaatgtaaattagtacaaccactgtagagaaccgtttggagcttcctcagaaaactaacaattgaactaccatgcaatctagcaatggtag-------tactgggtatatatccaaaggacaggaggtcagtatatcgaagaga----tagccaagctcccatgtttattgcagcactattcacaatagtcaagagttggaggcaatctaagcatccatcaatagaccaatgaataaagaaaaggtggtacatatacagaatggagtactattcagccataaagaagaaagagatcctgccatttgcaacaa-atggatggaactggaggtcattatgtgaagtgaaattcgcgaggcccggaaaaacaaacgtcacgtgttttta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16940596 540 - 229590362 tggcaaacaggtacatgaaaaggtgctcaatgtcatt----aatcatcatagaaatgcaaatcaaaactacaatgagattatcatctcaccccagttaagatggcttttatccaaaaat-caggcaataacaaatgctggtgaggatgtggagaaaagggagccctcgtacactgtggg------------tttgtacaaccactgtagagaacagttcggaggtttctcaaaaaactaacaattgaactaccatgcaatctagcgattgtag-------tactgggtatttatccaaaggataggaggtcagtatatgggagaga----tagccaagctcccatgttgattgcagcactattcgcagtagtcgagagttggaagcaacctaagcatccatcagtagacaaatgaatagagaaaaggtggcacatatacagaatggagtactatacagccataaagaagaatgaaatcctgccatttgcaacaacatggatggaactggaggtcattgtgttaagtaaaattagcaaggcccagaaaaacaaacttcacatgttttta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223703402 540 - 227556264 tggcaaacaggtacatgaaaaggtgctcaatgtcatt----aatcatcatagaaatgcaaatcaaaactacaatgagattatcatctcaccccagttaaggtggcttttatccaaaaat-caggcaataacaaatgctggtgaggatgtggagaaaagggagccctcgtacactgtggg------------tttgtacaaccactgtagagaacagttcggaggtttctcaaaaaactaacaattgaactaccatgcaatctagcgattgtag-------tactgggtatttatccaaaggataggaggtcagtatatgggagaga----tagccaagctcccatgttgattgcagcactattcgcagtagtcgagagttggaagcaacctaagcatccatcagtagacaaatgaatagagaaaaggtggcacatatacagaatggagtactatacagccataaagaagaatgaaatcctgccatttgcaacaacatggatggaactggaggtcattgtgttaagtaaaattagcaaggcccagaaaaacaaacttcacatgttttta i macFas5.chr1 I 325 C 0 s papAnu2.chr1 16753642 540 - 220367699 tggcaaacaggtacatgaaaaggtgctcaacgtcatt----aatcatcatagaaatgcaaatcaaaactacaatgagattatcatctcaccccagttaagatggcttttatccaaaaat-caggcaataacaaatgctggtgaggatgtggagaaaagggagccctcGTACACTGTGGG------------TTTGTACAACCACtgtagagaacagtttggaggtttctcaaaaaactaacaatTGAACTACCATGCAATCTAGCAATTGTag-------tactgggtatttatccaaaggataGGAGGtcagtatatggaagaga----taGCCAAGCTCCCatgttgattgcagcactattcgcagtAGTCGAGAGttggaagcaacctaagcatCCAGCAGTAGACAAATGAATAgagaaaaggtggcacatatacagaatggagtactatacagccataaagaagaatgaaatcctgccatttgcaacaacatggatggaactggaggtcattgtgttaAGTAAAATTAGCAAGGCccagaaaaacaaacttcacatgtttTTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82551945 540 + 85787240 tggcaaacaggtacatggaaaggtgctcaacatcatt----aatcatcatagaaatgcaaatcaaaactacaatgagattatcatctcaccccagttaagatggcttttatccaaaaat-caggcaataacaaatgctggtgaggatgtggagaaaagggaaccctcgtacactgtggg------------ttagtacaaccactgtagaaaacagttcggaggtttctcaaaaaactagcaattgaactaccatgcaatctagcaattgtag-------tagtgggtatttatccaaaggataggaggtcagtatatggaagaga----tagccaagctcccatgttgattgcagcactattcacagtagtcgagagttggaagcaacctaagcatccatcagtagacaaatgaatagagaaaaggtggtgcatatacagaatggagtactatacagccataaagaagaatgaaatcctgccatttgcaacaacatggatggaactggaagtcattgtgttaaggaaaatcagcaaggcccagaaaaacaaacttcacctgttttta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14234425 554 - 49578535 tggcaaacaggtacatgaaaaggtgttcagcatcatg----gatcatcagagaaatgcaaattaaaactgcaatgagattgtcatctcaccccagttaaaatggcttttatccaaaaat-cagtcactaacacatgctggtgaggatgcagagaaaagggagccctc---------gggtgggaatgtaaattgatacaaccactgtagagaactgtttggagttttctcaaaaaactaaaaattgaactactgtgcaatgtggcacctgtagatagatagactggatatctatccagaagataggaattcagtatatcaaagggatacgtacccgagctcccatgtttactgcagcagtattcatggtagtcaagagttggaagaaacctaagcatccatcagcagataaacgaataaaggaaacgtggcacgtatacagaatggagtactagtcagccctaaagaagaatgacatcctgccatttgcgacaacatgggtagaactccgtgtcattgtgataagtgaaattagagaggcacagaaaaacaaactttacatgttttca i calJac3.chr19 C 0 I 560 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36381491 178 + 80974532 I a score=745.000000 s hg38.chr1_KI270759v1_alt 224912 1 + 425601 t s panTro4.chr1 224979509 1 + 228333871 T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226346362 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140230397 1 - 143122389 T i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16941136 1 - 229590362 c i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223703942 1 - 227556264 c i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16754182 1 - 220367699 C i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82552485 1 + 85787240 T i chlSab2.chr25 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36381491 178 + 80974532 I e calJac3.chr19 14234979 560 - 49578535 I a score=16376.000000 s hg38.chr1_KI270759v1_alt 224913 5 + 425601 gtgtg s panTro4.chr1 224979510 5 + 228333871 GTGTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226346363 5 - 229942017 GTGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140230398 5 - 143122389 GCGTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16941137 5 - 229590362 GTGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223703943 5 - 227556264 gtgtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16754183 5 - 220367699 GTGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82552486 5 + 85787240 gtgtg i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36381669 5 + 80974532 GTGTG i canFam3.chr7 I 178 C 0 e mm10.chr1 178812810 1520 + 195471971 I e calJac3.chr19 14234979 560 - 49578535 I a score=3887724.000000 s hg38.chr1_KI270759v1_alt 224918 1192 + 425601 ctgcccagatgacacaattcaggaaaatctttcagctcctaccagagagtaaagctcttcagc--t--gtagtgggtttacctgctgtgtgtcttcaggcttctcccag---ttctttatctctgctg---tggagccaatataaagttatcaataacatttggtggtgtagatgcttctcatctgtgcaatttaggagtagactct--aatacagagcagctgctgggtgaaccaaagatggctttagtgatattta-------------------------tagcttattgaTTGCATAGTT-CTTTGTCTGTGATTATCATTCAATAAATACTGATGGAC----TGAGTTTCCCGGAACACTGAGATTCGTTTTAAGCAGCTTCCAGCATTCTTTCTGTGTATGTGGGGGGAGGTTCAGGAGGCAGTAGAAGGTGG-CCATAATAATGTTGTC----------TTGTGGTGGTAGTA------------------------GTTG------------------------------------TTATAATTTCCCTTTTATATCCTAATTCTGGCCACGACCTAACTCACTGTACTGAGACATTTTCCCCCTATAATATGGAGATATGTTGCTAAGCAACCAGATCAGTAATTGGTAAGTGCTTATGTATAATATGATTTGATTTGAGTTACATACAAAAATATGTAAATGG-TTTTTTATCT--------TCATTATTAGATAAATGATTATCATTTGGTTTTATTTTGCCC-----AAATAAAATAACTGCTTTCATTTACCAAA------ATTAACAtgatgtagtagaaaggccttggatttagaggatgg-aaaca-cgaatgcaagtcccaggtctgagag--tcagcagccctgtggccatggctaaagtcagggaacttgccaggcctcgttc-------------ttttttt----------tcaacccgtaatgtgtggtacaaataccttctctgctggcctcccagggccaggttaaggatggatgtgatgatgtatagaaaatgttttAAG-AAAAAAAAAA---TCCAAGGTCTAAGCATTGTCTAGAATTCCAGGCTACTTAATCTTGGAACTCTGAGTCTGTTAGTATAATTCCAAAGGCTGGATTGACTAAGAAGTA---------------CTGTCCTC-CAGCAGGGCACAGAGCCATAGGGCAGGTCTGCGCC-TATAGAAGAAAGTAAACACATGGCATGGACCCTGAATAAGTGAACAGTGCAGTGATGGTGGCGAGGC-----------AGAAGCAAAAGGCCACATGGTCAAGCACC--------------------------------------------CTGTCATTAAGCATTAAAACATAAGATAGATCATCTCAAGAC s panTro4.chr1 224979515 1198 + 228333871 CTGCCCAGATGACACAATTCAGGAAAAGCTTTCAGCTCCTACCAGAGAGTAAAGCTCTTCAGC--T--GTAGTGGGTTTACCTGCTGTGTGTCTTCAGGCTTCTCCCAG---TTCTTTATCTCTGCTG---TGGAGCCAATATAAAGTTATCAATAACATTTGGTGGTGTAGATGCTTCTCATCTGTGCAATTTAGGAGTAGACTCT--AATACAGAGCAGCTGCTGGGTGAACCAAAGATGGCTTTAGTGATATTTA-------------------------TAGCTTATTGATTGCATAGTT-CTTTGTCTATGATTATCGTTCAATAAATACTGATGGAC----TGAGTTTCCCGGAACACTGAGATTCGTTTTAAGCAGCTTCCAGCATTCTTTCTGTGTATGTGGGGGGAGGTTCAGGAGGCAGTAGAAGGTGG-CCATAATAATGTTGTC----------TTGTGGTGGTAGTA------------------------GTTG------------------------------------TTATAATTTCCCTTTTATATCCTAATTCTGGCCACGACCTAACTCACTGTACTGAGACATTTTCCCCCTATAATATGGAGGTATGTTGCTAAGCAACCAGATCAGTAATTGGTAAGTGCTTATGTATAATATGATTTGATTTGAGTTACATACAAAAATATGTAAATGG-TTTTTTATCT--------TCATTATTAGATAAATGATTATCATTTGGTTTTATTTTGCCCAAATAAAATAAAATAACTGCTTTCATTTACCAAA------ATTAACAtgatgtagtagaaaggccttggattgagaggatgg-aaaca-cgaatgcaagtcccaggtctgagag--tcagcagtcctgcggccatggctaaagtcagggaacttgccaggccttgttc------------tttttttt----------tcaacctgtaacgtgtggtacaaataccttctctgctggcctcccagggccacgttaaggatggatgtgatgatgtatagaaaatgttttAAG-AAAAAAAAAA---TCCAAGGTCTAAGCATTGTCTAGAATTCCAGGCTACTTAATCTTGGAACTCTGAGTCTGTTAGTATAATTCCAAAGGCTGGATTGACTAAGAAGTA---------------CTGTCCTC-CAGCAGGGCACAGAGCCATAGGGCAGGTCTGCGCC-TATAGAAGAAAGTAAACACATGGCATGGACCCTGAATAAGTGAACAGTGCAGTGATGGTGGCGAGGC-----------AGAAGCAAAAGGCCACGTGGTCAAGCACC--------------------------------------------ATGTCATTAAGCATTAAAACATAAGATAGATCATCTCAAGAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226346368 1199 - 229942017 CTGCCTAGATGACACAATTCAGGAAAAGCTTTCAGCTCCTACCAGAGAGTAAAGCTCTGTAGC--T--GTAGTGGGTTTACCTGCTGTGTGTCTTCAGACTTCTCCCAG-------TTATCTCTGCTG---TGGAGTCAATATAAAGTTATCAATAACATTTGGTGGTGTAGATGCTTCTCATCTGTGCAATTTAGGAGTAGACTCT--AATACAGAGCAGCTGCTGGGCGAACCAAAGATGGCTTTAGTGATATTTA-------------------------TAGCTTATTGATTGCATAGTT-CTTTGTCTATGATTATCATTCAATAAATACTGATGGAC----TGAGTTTCCCGGAACACTGAGATTCGTTTTAAGCAGCTTCCAGCATTCTTTCTGTGTATGTGGGGGGAGGTTCAGGAGGCAGTAGAAGGTGG-CCATAATAATGTTGTC----------TTGTGGTGGTAGTA------------------------GTTG------------------------------------TTATAATTTCCCTTTTATATCCTAATTCTGGCCACGACCTAACTCACTGTACTGAGACATTTTCCCCCTATAATATGGAGGTATGTTGCTAAGCAACCAGATCAGTAATTGGTAAGTGCTTATGTATAATATGATTTGATTTGAGTTACATACAAAAATATGTAAATGG-TTTTTTCTCT--------TCATTATTAGATAAATGATTATCATATGGTTTTATTTTGCCCAAATAAAATAAAATAACTGCTTTCATTTACCAAA------ATTAACAtgatgtagtagaaaggccttggatttagaggatggaaaaca-ggaatccaagtcccaggtctgacag--tcagcagtcttgtggccatggctaaagtcagggaacttgccaagccttcctctt--------ctttttgttt----------tcagcctgtaatgtgttgtacaaataccttctctgcttgcctcccagggccaggttaaggatggatgtgatgatgtgtagacaatgttttAGG-AAAAAAAATA---TCCAAGGTCTAAGCATTGTCTAGAATTCCAGGCTACTTAATCTTGGAACTCTGAGTCTGTTAGTATAATTCCAAAGGCTGGATTGACTGAGAAGTA---------------CTGTCCTC-CAGCAGGGCACAGAGCCATAGGGCAGGTCTGTGCC-TATAGAAGAAAGTAAACACATGGCATGGACCCCGAATAAGTGAACAGTGCAGTGATGGTGGCGAGAC-----------AGAAGCAAAAGGCCACATGGTCAAGCACC--------------------------------------------GTGTCATTAAGCATTAAAACATAAGATAGATCATCTCAAGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140230403 1203 - 143122389 CTGCCCAGACGACACAATTCCAGAAAAGCTTTCAGCCCCTACCAGAGAATAAAGCTCGTTAGC--T--GTAGTGGGTTTACCTGCTGTGGGTCTTCAGGCTTCTCCCAG---TTCTTCGTCTCTGCCG---TGGAGCCAATATAAAGTTATCAGTAACATTCGGTGATGTAGATGCTTCTCATCTGTGCAGTTTAGGAGTAGACTGT--AATACAGAGCAGCTGCTGGGTGAACCAAAGATGGCTTTAGTGATATTTA-------------------------TAGCGTATTGATTGCATAGTT-CTTTGTCTGTGATTATCATTCAATAAATACTGATGGAC----TGAGTTTCCCGGAACCCTGAGATTCGTTTTAAGCAGCTTCCAGCATTCTTTCTGTGTATATGGGGGGAGGTTCAGGAGGCAGTAGAAGGTGG-CCATAATAATGTTGTC----------TTGTGGTGGTAGTA------------------------GTTG------------------------------------TTATAATTTCCCTTTTATATCCTAATTCTGGCCATGACCTAGCTCACTGTACTGAGACCTTTTCCCCCTATAATATGGAGGTATGTTGCTAAGCAACCAGATCAGTAATTGGTAAGTGCTTATGTATAATATAATTTGATTTGAGTTACATACAAAAATATGTAAATGGTTTTTTTCTCT--------TCATTATTAGATAAATGATTATCATTTGGTTTTATTTTGCCCAAATAAAATAAAGTAACTGCTTTCATTTACCAAA------ATTAACAtgatgtagtagaaaggccttggatttagaggatggaaaaca-cgaatgcaagtcccaggtctgagag--tcagcagtcctgtggccatggctaaagtcagggaacttgccaagccttcttc----------tttttttttt----------tcaacctgtaatgtgtggtccaaataccttctctgcttgcctcccagggccaggttaagggtggatgtgatgatgtatagaaaatgttttAAGAAAAAAAAAAA---TCCAGGGTCTAAGCATTGTCTAGAATTCCAGGCTACTTAATCTTGGAACTCTGAGTCTGTTAGTATAATTCCAAAGGCTGGATTGACTAAGAAGTA---------------CTGTCCTC-CAGTAGGGCACAGAGCCATAGGGCAGGTCTGCACC-TATAGAAGAAAGTAAACACATGGCATGGACCCTGAATAAGTGAACAGTGCAGTGATGGTGGCGAGAC-----------AGAAGCAAAAGGCCACATGGTCAAGCACC--------------------------------------------GTCTCATTAAGCATTAAAACATAAGATAGATCATCTCAAGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16941142 1279 - 229590362 CTGCCCAGATAACACAATTCAGGAAAAGCTTTCAGCTCCCGCCAGAAAGTAAAGCTCTTCAGC--C--GTAGTGGGTTTACCTGCTGTGTGTCTTCAGGCTTCTCCCAG---TTCTCTCTCTCTGCTG---TGGAGCCAATATAAAGTTACCAATAACATTT-GTGGTGTAGATGCTTCTCATCTGTGCAGTTTAGGAGTAGACTCT--AATACAGAGCAGCTGCTGGGTGAACCGAAGATGGCTTTAGTGATATTTATAGCTTATTGATGTAGTGATATTTGTAGCTTATTGATTGCATAGTT-CTTTGTCTATGATTATCATTCAATAAATACTGATGGAC----TGAGTTTCCTGGAACTCTGAGATTCGTTTTAAGCAGCTTCCAGCATTCTTTCTCTGTGTGTGGAGGGAGGTTCAGGAGGCAGTAGAAGGTGG-CTGTAATAATGTGGTG----------TTGTGGTGGTAGTA------------------------GTTG------------------------------------TTACAATTTCCCTTTTATATCCTAATTCTGGCCACGACCTAACTCACTGTACTGAGACATTTTCCCCCTATAATGTGGAGGTATGTTGCTAAGCAACCAGATCAGTAATTGGTAAGTGCTTATGTATAATATGATTTGATTTGAGTTACATACAAAAATATGTAAATGG-TTTTTTCTCT--------TCATTATTAGATAAATGATTATCATTTGGTTTTATTTTGCCCAAATAATATAAAATAACTGCTTTCATTTACCAAC------ATTAACAtgatatagtagaaaggcccaggatt-agaggatggaaaaca-tgaatcctagtcccaggtctgagag--tcagcagtcctgtggccatggctaaagtcagggaacttgccaagccttcctcttcttcttcctttttttttt----------ccaatctggaatgtgtggtacaaataccttctctgcttgcctcccagggccaggttaagaatggatgtgatgatgtatagaaaatattttAGG--AAAAAGAAA---TCCAAGGTCTAAGCATTATCTGGAATTCCAGGCTACTTAATTTTGGAACTCTGAGTCTGTTAGTATAATTCCAAAGGTTGGATTGACTGAGAAGGA-------------GGCCCTCCTC-CAGGAGGGCACAGAGCCAGAGGGCAGGTGTGCACC-TATAGAAGAAAGTAAACACACGGCATGGACCCTGAATAAGTGAACAGTGCAGTGACGGTGGTGAGAC-----------AGAAGCAAAAGGCCACATGGTCAAGCACTAAGCATTAAAGCATTAAAAGCATAAGATAGATCATCTCAAGACCGTCTCATTAAGCATTAAAGCATAAGATAGATCATCTCAAGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223703948 1235 - 227556264 ctgcccagataacacaattcaggaaaagctttcagctcccgccagaaagtaaagctcttcagc--c--gtagtgggtttacctgctgtgtgtcttcaggcttctcccag---ttctctctctctgctg---tggagccaatataaagttaccaataacattt-gtggtgtagatgcttctcatctgtgcagtttaggagtagactct--aatacagagcagctgctcggtgaaccaaagatggctttagtgatatttatagcttattgaTGTAGTGATATTTGTAGCTTATTGATTGCATAGTT-CTTTGTCTATGATTATCATTCAATAAATACTGATGGAC----TGAGTTTCCTGGAACTCTGAGATTCGTTTTAAGCAGCTTCCAGCATTCTTTCTCTGTGTGTGGAGGGAGGTTCAGGAGGCAGTAGAAGGTGG-CTGTAATAATGTGGTG----------TTGTGGTGGTAGTA------------------------GTTG------------------------------------TTATAATTTCCCTTTTATATCCTAATTCTGGCCACGACCTAACTCACTGTACTGAGACATTTTCCCCCTATAATGTGGAGGTATGTTGCTAAGCAACCAGATCAGTAATTGGTAAGTGCTTATGTATAATATGATTTGATTTGAGTTACATACAAAAATATGTAAATGG-TTTTTTCTCT--------TCATTATTAGATAAATGATTATCATTTGGTTTTATTTTGCCCAAATAATATAAAATAACTGCTTTCATTTACCAAC------ATTAACAtgatgtagtagaaaggcccaggatt-agaggatggaaaaca-tgaatcctagtcccaggtctgagag--tcagcagtcctgtggccatggctaaagtcagggaacttgccaagccttcctcttcttcttcctttttttttt----------ccaatctggaatgtgtggtacaaataccttctctgcttgcctcccagggccaggttaagaatggatgtgatgatgtatagaaaatattttAGG--AAAAAGAAA---TCCAAGGTCTAAGCATTGTCTGGAATTCCAGGCTACTTAATTTTAGAACTCTGAGTCTGTTAGTATAATTCCAAAGGTTGGATTGACTGAGAAGGA-------------GGCCCTCCTC-CAGGAGGGCACAAAGCCAGAGGGCAGGTGTGCACC-TATAGAAGAAAGTAAACACACGGCATGGACCCTGAATAAGTGAACAGTGCAGTGACGGTGGTGAGAC-----------AGAAGCAAAAGGCCACATGGTCAAGCACT--------------------------------------------GTCTCATTAAGCATTAAAGCATAAGATAGATCATCTCAAGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16754188 1246 - 220367699 CTGCCCAGATAACACAATTCAGGAAATGCTTTCAGCTCCCGCCAGAAAGTAAAGCTCTTCAGC--C--GTAGTGGGTTTACCTGCTGTGTGTCTTCAGGCTTCTCCCAG---TTCTCGATCTCTGCTG---TGGAGTCAATATAAAGTTATCAATAACATTTGGTGGTGTAGATGCTTCTCATCTGTGCAGTTTAGGAGTAGACTCT--AATACAGAGCAGCTGCTGGGTGAACCAAAGATGGCTTTAGTGATATTTATAGCTTATTGATGTAGTGATATTTGTAGCTTATTGATTGCATAGTT-CTTTGTCTATGATTATCATTCAATAAATCCTGATGGAC----TGAGTTTCCCGGAACTCTGAGATTCGTTTTAAGCAGCTTCCAgcattctttctctgtgtgtggagGGAGGTTCAGGAGGCAGTAGAAGGTGG-CTGTAATAATGTGGTG----------TTGTGGTGGTAGTA------------------------GTTG------------------------------------TTATAATTTCCCTTTTATATCCTAATTCTGGCCACGACCTAACTCACTGTACTGAGACATTTTCCCCCTATAATGTGGAGGTATGTTGCTAAGCAACCAGATCAGTAATTGGTAAGTGCTTATGTATAATATGATTTGATTTGAGttacatacaaaaatatgtaaatgg-ttttttctct--------tcattattagATAAATGATTatcatttggttttattttgcccaaataatataaaataactgCTTTCATTTACCAAC------ATTAACATGATGTAGTAGAAAGGCCCAGGATT-AGAGGATGGAAAACA-TGAATCCTAGTCCCAGGTCTGAGAG--TCAGCAGTCCTGTGGCCATGGCTAAAGTCAGGGAACTTGCCaagccttcttcttcttcttcctttttttttttttttttttcccaatctgtAATGTGTGGTACAAATACCTTCTCTTCTTGCCTCCCAGGGCCAGATTAAGAATGGTTGTGATGatgtatagaaaatattttagg--aaaaagaaa---tccaAGGTCTAAGCATTGTCTGGAATTCCAGGCTACTTAATTTTGGAACTCTGAGTCTGTTAGTATAATTCCAAAGGTTGGATTGACTGAGAAGGA-------------GGCCCTCCTC-CAGGAGGGCACAGAGCCAGAGGGCAGGTGTGCACC-TATAGAAGAAAGTAAACACACGGCATGGACCCTGAATAAGTGAACAGTGCAGTGACAGTGGTGAGAC-----------AGAAGCAAAAGGCCACATGGTCAAGCACT--------------------------------------------GTCTCATTAAGCATTAAAGCATAAGATAGATCATCTCAAGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82552491 1241 + 85787240 ctgcccagataacacaattcaggaaaagctttcagctcccaccagaaagtaaagctcttcagc--t--gtagtgggtttacctgctgtgtgtcttcaggcttctcccag---ttctctgtctctgctg---tggagccaatataaagttatcaataacatttggtggcgtagatgctcctcatctgtgcagtttaggggtagactct--aatacagagcagctgctgggtgaaccaaagatggctttagtgatatttatagcttattgatttagTGATATTTGTAGCTTATTGATTGCATAGTT-CTTTGTCTATGATTATCATTCAATAAATACTGATGGAC----TGAGTTTCCCGGAACTCTGAGATTCGTTTTAAGCAGCTTCCAGCATTCTTTCTGTGTGTGTGGAGGGAGGTTCAGGAGGCAGTAGAAGGTGG-CCGTAATAATGTGGTG----------TTGTGGTGGTAGTA------------------------GTTG------------------------------------TTATAATTTCCCTTTTATATCCTAATTCTGGCCACGACCTAACTCACTGTACTGAGACATTTTCCCCCTATAATGTGGAGGTATGTTGCTAAGCAACCAGATCAGTAATTGGTAAGTGCTTATGTATAATATGATTTGATTTGAGTTACATACAAAAATATGTAAATGG-TTTTTTCTCT--------TCATTATTAGATAAATGATTATCATTTGGTTTTATTTTGCCCAAATAAAATAAAATAACTGCTTTCATTTACCAAC------ATTAACATGATGTAGTAGAAAGGCCTGGGATT-AGAGGATGGAAAACATTGAATCCTAGTCCCAGGTCTGAGAG--TCAGCAGTCCTGTGGCCATGGCTAAAGTCAGGGAACTTGCCAAGCcttcttcttcttcttcctttttttttt-----TtttcccaatctgtaatgtgtggtagaaataccttctctgcttgcctcccagggccagattaagaatggatgtgatgatgtatagaaaatattttAGG--AAAAAGAAA---TCCAAGGTCTAAGCATTGTCTAGAATTCCAGGCTACTTAATTTTGGAACTCTGAGTCTGTTAGTATAATTCCAAAGGTTGGATTGACTGAGAAAGA-------------GGCCCTCCTC-CAGGAGGGCACAGAGCCAGAGGGCAGGTGTGCACC-TATAGAAGAAAGT-AACACACGGCATGGACCGTGAATAAGTGAACAGTGCAGTGACGGTGGTGAGAC-----------AGAAGCAAAAGGCCACATGGTCAAGCACT--------------------------------------------GTCTCATTAAGCATTAAAACATAAGATAGATCATCTCAAGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14235539 1216 - 49578535 CTGCCCAGATAATGCAGTTCGGGGAGAGTGCGCAGCTCTTGCCAGAGAGTAAAGCCCTTCAGCTGT--GTAGTGGGTTTTCCCGCAGTGTGTCTTCAGGATTCTTCCGG---TTCTTTATCTCCGCTG---TGGAGCCAATAGGAAGTTATCCCTAACGTTTGATGGTGAAGGTGCTTCTCATCTGTGCCATTTAGG-----------------AGAGCAGCTGCTGGGTGAACCAAAGATGGCTTTCGTGATATTTG-------------------------CACGTGATTGGTTGCACAGTT-CTTTGTATATGGTTATCTTTCAGTAAATACCGATGGAC----TGAGTGTCCTGGAACACTGAGCTTAGTGTGTAGCCGCGTCCAGCATTCCTCCTGGGTCTGTGGAGGGAGGTTCAGGAGGCAGTAGAAAGCGGTCCATAGTAGTGTTGTG----------TTCTGGTGGTATCA------------------------GTTGACCCCTCCAGGTAATAGGAATGGAGAAGCCATTTTTATATAATTTCCCTTTTATATCCTAATTCT-GCCATGACCCACCTCACTGTACTGAGACA-TTTCCCCCTAGAATATGGAGGTATGTTGCTAAGCAACCAGATCAGCCATTGGTAAGTGCTTTTGTATAATACAATTTGATTTGAGTTACATACAAAAATATGTGAATG--TTTTTTCTCT--------TCGTTATTAGATAAGTGATTATCACTTGGTTTTATTTTGCCCAGATAAAATAAAATAACTGCTTTCATTTACCAAA------ATTaatatgatgtcatagaaaggccttggatttagggaacagaaaaca-tgaatccaagtcccaggtatgagag--tcagtagtcctgtgaccacggctgaaatcaggtcacttaccaagccttccc-----------tttttttctt----------taaacctgtaacgtgtggtacgaagaccctctctgcttgtcttgcagggccaggttaaggatggatgtgacgatgtgtagaaaacgttttAGG-ATAAAAAAAA---TCCAAGATCTAAGCATTGTCTAGAATTCCAGACTACTTAATCTTGGGACTCCAGGTCTGTATGTATAATTCCAAAGGCTGGATTGATCAAGAACTA---------------CTGTCCTT-CAGCAAGGCACAGAGCTATAGGGCA----CGCGGC-TACAGAAGAAAGTAAGCACGTGGCATTAACCCTGAATAAGTTAACAGCGCAATGATGCTGGACAGAC-----------AGAAGCAAAAGGCCACCT-GTAAAGCACC--------------------------------------------ATCTCATTAAGCATTAAAACATAAGATACATAATCTCAAGAC i calJac3.chr19 I 560 C 0 s canFam3.chr7 36381674 1310 + 80974532 CCACTCAGATAACACAGTTCAGGAAAAGCTTGCAGCTCTACCCTGGTGGTGAAGCTCTTTAAC--TGGGTAGCACGGTTACCTACCGTGTGTCTGCAGGCTCCTTCACGCTTTTCTTTATCTCTGCTGCCACAGAGCCAGTATAAAGTTATCAGTCGTGCTGGGTGATGTGGATTCTTCACATCTCTGCATTTTAGGAGTGGACCCTTGAACACAGAGCGGCTGCTGGGTGACTC-CCGATGACTTTCATGATATCTA-------------------------TAGCCCACTGATTGCATAGTTATTTTGTGCAGAGTTGCCATCCGGTAAATACCAATGGACCGGTTGAGTTTCC-AGAGCATTCAAATGTGTCCTAAGCAACTTCCAGCATTTTGTTGGTGTCTATAGAGGGAGAGACACAACATAGCAGAGGATGGTACATACTAATGTGGTGGCAGTGGTACTTGTGCTGTTGTTATTGTCATGCAAGGGCTCACTCTGGGTTG--------GGATTGTAGGGACAGAGAAGCCATTTTCATATAATTTGCCATTCACATCCTAATTCTGGGCATGACCTGACTCACTCAGCAGAGACA-TTTCCCCCTGTGATATGAAGGTATGTTGCTAAGCAACCAGATCAGTAATTGGTAAATGCTTAT-----ATATGATTTGATTTGAGTTACATGCAAAAATATATAACTGC-TTTTTTTTCTGGTCTTCATTATTATTAAGCAAATGATTATCATTTGGTTTTATTTTGCCCAAATAAAATAAAATAACTGCTTTCATTTATCAAGTTGCATAATagcatgatgctgtggaaaaatcctggctccagaagagcaaaagct-tgcgttcgaatcttaagtatgagagaatcactagtcccatgacagtggataaaatctggtaactt-ctgagccttcact----------tttttttttt----------ttaacctctcatttgcggtacggatctcttctcagcttaccccacatcgctgag-tgaggatggatgtggccacgggtggaaaatgctttAGG-AAGAGTAAGACATTCCAGGGTCTGAGCATTATCTAGAACTCCAGGCTACTGAAGCTTGGGACTTTTCATGTGT---CATAACCCCCAA-GCTGGATGGATTAGGCAGCACAGAGTGAGCGCACACTGTCCCCTCGACCAGGCACAAAGCTCTGGGGCGGGTCTAGGCCGTGCAGAAGAAAG--GACACGTGGTATTGACCTTGAGTGAGTTCGCACTGCCGTGCTGGGGGCAGCACTAGTAACACAGAGAAGCACAAGCCCCCACTGCAAAGCTGC--------------------------------------------ATCTCATTACACTCTGGAACATAAGATAGATTCTCTCAAGAC i canFam3.chr7 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I a score=730475.000000 s hg38.chr1_KI270759v1_alt 226110 260 + 425601 CAACTGCTggccaggtgcagtggctcacacctgttattcctgcactttgggaggctgagatgagaggatcactcgag-gcgaggagttcaagaccatcctgggcaacaaagtgagtccctgtctctac-----a-caa----aaaacctttttcaattagccaggcatgatggggc----acacc-tgtagtcctcgctactctctaggatcacttcagcccagaagtttgaggctgcagtgggctatgatcatgccacag-cactccagcatggtg s panTro4.chr1 224980713 260 + 228333871 CAACTGCTggccaggtgcagtggctcacacctgttattcctgcactttgggaggctgagatgagaggatcactggag-gcgaggagttcaagaccatcctgggcaacaaagtgagtccctgtctctac-----a-caa----aaaacctttttcaattagccaggcatgatggtgc----acacc-tgtagtcctcgctactctctaggatcacttcagcccagaagtttgaggctgcagtgggctatggtcatgccacag-cactccagcatggtg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226347567 257 - 229942017 CAACTGCTggccaggtgcagtggctcacacctgtaattcctgcaccttgggaggctgagatgagaggatcacttgag-gccaggagttcaagaccatcctgggcaacaaagtgagaccctgtctctac-----a--aa----gaaaactttttcaattagccaggcatgatggtgc----acaccttgtagtcctcgctactctctaggatcacttcagcccag-agtttga-gctgcagt-ggctatgatcgtg-cacagccactccagcatggTG i ponAbe2.chr1 C 0 M 335 s nomLeu3.chr5 140231606 261 - 143122389 CAACTGCTggccaggtgcagtggctcacacctgtaattcctgcactttgggaggctgagatgagaggatcacttgag-gcgaggagttcaagaccatcctgggcaacaaagtgagaccctgtctctac-----aaaaa----aaaacctttttcaattagccaggcctgatggtgc----atgcc-tgtagtcctcgctattctctaggatcacttcagcccagaagtttgaggctgcagtgggctatgatcgtgccacag-cactccagcatggtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16942421 263 - 229590362 CAACTGCTggccaggtgcagtggctcacacctgtaattcctgcactttgggaggctgaggtgggtggatcactt------gaggagttcaagaccatcctgggcaacaaagtgagatgctgtctctcc-aaaaa-aaa----aaaaaagttttcaattagccaggcatgatggtgcctgtacacc-tgtagtccttgctactctctaggatcacttcggcccagaggtttgaggctgcagtgggctatgatcgtgccacag-cactctagcatggtg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223705183 267 - 227556264 CAACTGCTggccaggtgcagtggctcacacctgtaattcctgcactttgggaggctgagatgagaagatcacttgag-gcgaggagttcaagaccatcctgggcaacaaagtgagatgctgtctctcc--aaaa-aaa----aaaaaagttttcaattagccaggcatgatggtgcctgtacacc-tgtagtccttgctactctctaggatcacttcggcccagaggtttgaggctgcagtgggctatgatcgtgccacag-cactctagcgtggtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16755434 269 - 220367699 CAactgctggccaggtgcagtggctcacacctgtaattcctgcactttgggaggctgagatgagaagatcacttgag-gcgaggagttcaagaccatcctgggcaacaaagtgagatgctgtctctccaaaaaa-aaa----aaaaaagttttcaattagccaggcatgatggtgcctgtacacc-tgtagtccttgctactctCTAGGATCACTTCAGCGCagaggtttgaggctgcagtgggctatgatagtgccacag-cactccagcatggtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82553732 273 + 85787240 CAACTGCTggccaggtgcagtggctcacacctgtaattcctgcactttgggaggctgagatgagaagatcacttgag-gcgaggagttcaagaccatcctgggcaacaaagtgagacgctgtctctacaaaaaa-aaaagacaaaaaagttttcaattaaccaggcatgatggtgcctgtacacc-tgttgtccttgctactctctaggatcacttcagcccagaggtttgaggctgcagtgggctatgatcgtgccacag-cactccagcatggtg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14236755 262 - 49578535 CAACTGCAggccaggtgcagtgactcacacctgtaattcctgcactgtgggaggctgagacaaggggatcacttgggagtgaggagttcaagaccatcctgggcaacaaagtgagaccctgtctctaa----aa-aaa----aataagttttttaattagccaggcatggtggtgc----acacc-tgtagtcctagctactctgtaggatcacttgagcccagaagtttgaggctgcagggggctgtgattgtgccactg-cagtccagcatggtg i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36382984 0 + 80974532 C a score=108451.000000 s hg38.chr1_KI270759v1_alt 226370 51 + 425601 acagagccagaccctgtccttaagaaaaaaac------aaagcaaacaacaaaaaGA s panTro4.chr1 224980973 56 + 228333871 acagagccagaccctgtccttaagaaaaaaaca-aaagaaagcaaacaacaaaaAGA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140231867 57 - 143122389 acagagcgagaccctgtccttaagaaaaaaaaacaaacaaaGCAAACAACAAAAAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16942684 56 - 229590362 acagagcgagaccctgtccttcagaaaaaaaca-aaagaaaacaaacaaCAGAAAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223705450 56 - 227556264 acagagcgagaccctgtccttcagaaaaaaaca-aaagaaaacaaaCAACAGAAAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16755703 56 - 220367699 acagagcgagaccctgtccttcagaaaaaaaca-aaagaaaacaaacaacaaaaaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82554005 56 + 85787240 acagagcgagaccctgtccttcagaaaaaaaca-aaagaaaacaaaCAACAGAAAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14237017 48 - 49578535 acagagtaagaccctgtctttaagaaaaaaaca-aaaca--------aataaaaaaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36382984 0 + 80974532 C e ponAbe2.chr1 226347824 335 - 229942017 M a score=186537.000000 s hg38.chr1_KI270759v1_alt 226421 70 + 425601 CAACTGCTATAAGACTTCAAGGGGAAGGACAATGATCCACGGGGGCTGAAGTCACTGATGAGGGCAACTT s panTro4.chr1 224981029 70 + 228333871 CAACTGCTATAAGACTTCAAGGGAAAGCACAATGATCCATGGGGGCTGAAGTCACTGATGAGGGCAACTT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140231924 70 - 143122389 CAACTGCTCTAAGACTTCGAGAGGAAGGACAATGATCCATGAGGGCTGAAGTCACTGATGAGGGCAACTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16942740 70 - 229590362 CAACTGCTGTAAGACTTCAAGGGAAAGGACAATGATCCATGAGGGCTGCAGTCATTGGTGAGGGCAACTT i rheMac3.chr1 C 0 I 158 s macFas5.chr1 223705506 70 - 227556264 CAACTGCTGTAAGACTTCAAGGGAAAGGACAATGATCCACGAGGGCTGCAGTCATTGGTGAGGGCAACTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16755759 70 - 220367699 caactgCTGTAAGACTTCAAGGGAAAGGACAATGATCCACGAGGGCTGCAGTCATTGGTGAGGGCAACTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82554061 70 + 85787240 CAACTGCTGTAAGACTTCAAGGGAAAGGACAATGATCCACGAGGGCTGCAGTCATTGGTGAGGGCAACTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14237065 70 - 49578535 CAACTGCTATAGGACTTCCAGGGAGAGGACAATGATCCATGAGGGCTGAAGTCACTGATGAGGGCAACTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36382984 70 + 80974532 CAATTGCTCTAAGACTTAAAGGCCTTGCCCGAGGACCCCTGAAGGCTGGAGTAGTTAACGACGGCAACTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e ponAbe2.chr1 226347824 335 - 229942017 M a score=27562.000000 s hg38.chr1_KI270759v1_alt 226491 19 + 425601 CTACAAGTCCTTGAAGCAT s panTro4.chr1 224981099 19 + 228333871 GTACAAGTCCTTGAAGCAT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140231994 19 - 143122389 GTACAAGTCCTTGAAGCAT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223705576 18 - 227556264 GTATAA-TCGTTGAAGCAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16755829 18 - 220367699 GTATAA-TCGTTGAAGCat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82554131 18 + 85787240 GTATAA-TCGTTGAAGCAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14237135 19 - 49578535 TTACAAGTCCTTGAAGCAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36383054 19 + 80974532 ACACAAGCCCTCGAAAAAC i canFam3.chr7 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e rheMac3.chr1 16942810 158 - 229590362 I e ponAbe2.chr1 226347824 335 - 229942017 M a score=1597.000000 s hg38.chr1_KI270759v1_alt 226510 2 + 425601 AG s panTro4.chr1 224981118 2 + 228333871 AG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140232013 2 - 143122389 GG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223705594 2 - 227556264 GG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16755847 2 - 220367699 gg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82554149 2 + 85787240 GG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14237154 2 - 49578535 GT i calJac3.chr19 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36383073 0 + 80974532 C e rheMac3.chr1 16942810 158 - 229590362 I e ponAbe2.chr1 226347824 335 - 229942017 M a score=123772.000000 s hg38.chr1_KI270759v1_alt 226512 137 + 425601 GAAAATTCTTttttcttttcttttcttttcttttcttttctttttttttttttttgagacagagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctctgcctcccgggttca s panTro4.chr1 224981120 128 + 228333871 GAAAATTCTTTTTTCTtttcttttc------tttctttttttttttttttttt---agacagagtcttgctctgtcgcccaggctggagtgcagtggcacaatcttggctcactgcaagctctgcctcctgggttca i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140232015 122 - 143122389 GAAAAttttttttttcttt------------tttcttttcttttttttttttg---agacagagtcttgctctgtcacccaggctggagtgcagtggcacaatctcggctcactgcaagctccgcctcctgggctca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223705596 108 - 227556264 GGAAAA--------------------------Gtttttttttttttttttttg---agacggagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaagctccggctcccgggttca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16755849 112 - 220367699 ggaaaa----------ttt------------tttttttttttttttttttttg---agacagagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaagctccggctcccgggttca i papAnu2.chr1 C 0 I 281 s chlSab2.chr25 82554151 111 + 85787240 GGAAAt-----------tt------------tttttttttttttttttttttg---agatggagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaagctccgcctcccgggttca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36383073 0 + 80974532 C e calJac3.chr19 14237156 0 - 49578535 C e rheMac3.chr1 16942810 158 - 229590362 I e ponAbe2.chr1 226347824 335 - 229942017 M a score=56588.000000 s hg38.chr1_KI270759v1_alt 226649 54 + 425601 cgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccac s panTro4.chr1 224981248 54 + 228333871 ttccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccac i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140232137 54 - 143122389 caccattctcctgcctcagcctcccaagtagctgggactgcaggtgcctgccac i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223705704 39 - 227556264 cgccattctcctgcctcagcctcccgagtagctggtaac--------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16756242 53 - 220367699 cgccattctcctgcctcagcctcccgagtagctgggactacaggcg-ccgccac i papAnu2.chr1 I 281 C 0 s chlSab2.chr25 82554262 54 + 85787240 cgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgctac i chlSab2.chr25 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36383073 0 + 80974532 C e calJac3.chr19 14237156 0 - 49578535 C e rheMac3.chr1 16942810 158 - 229590362 I e ponAbe2.chr1 226347824 335 - 229942017 M a score=202704.000000 s hg38.chr1_KI270759v1_alt 226703 121 + 425601 catgcccagctaattttttgta-tttttggtagagacggggtttcatcgtgttagccaggatggtctcgatctcccgacctcgtgatccgcctgcctcggcctcccaaagtgctgggattac s panTro4.chr1 224981302 121 + 228333871 cacacccagctaattttttgta-tttttggtagagacggggtttcatcgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattac i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140232191 121 - 143122389 cacacacagctaattttttgta-tttttagtagagatggggtttcatcatgttaaccaggatgctctctatctcttgacctcatgatctgcctgcttcggcctcccgaagtgctgggattac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16942968 121 - 229590362 catgcctggctacttttttgta-tttttagtagagatggggtttcactgtgttagccaggatggtctcgatctcctgacctcatgatccacccgcctcggtctcccaaagtgctgggattac i rheMac3.chr1 I 158 C 0 s macFas5.chr1 223705743 121 - 227556264 catgcctggctacttttttgta-tttttagtagagatggggtttcactgtgttagccaggatggtctcgatctcctgacctcatgatccacccgcctcggtctcccaaagtgctgggattac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16756295 122 - 220367699 ctcgcccggctagttttttgtattttttagtagagacggggtttcactgtgttagccaggatggtcttgatctcctgacctcgtgatccgcccatctcggcctcccaaagtgctgggattac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82554316 121 + 85787240 catgcctggctactttgttgta-tttttagtagagacggggtttcactgtgttagccaggatggtctcgatctcctgaactcatgatccaccagcctcggactcccaaagtgctgggattac i chlSab2.chr25 C 0 C 0 e mm10.chr1 178812810 1520 + 195471971 I e canFam3.chr7 36383073 0 + 80974532 C e calJac3.chr19 14237156 0 - 49578535 C e ponAbe2.chr1 226347824 335 - 229942017 M a score=8921.000000 s hg38.chr1_KI270759v1_alt 226824 8 + 425601 aggcgt------------------ga s panTro4.chr1 224981423 8 + 228333871 aggcgt------------------ga i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140232312 8 - 143122389 aggcgt------------------ga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16943089 8 - 229590362 aggcgt------------------ga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223705864 8 - 227556264 aggcat------------------ga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16756417 26 - 220367699 aggcttgagccactgcgcccggccga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82554437 8 + 85787240 aggcgt------------------ga i chlSab2.chr25 C 0 C 0 s mm10.chr1 178814330 8 + 195471971 AGACGG------------------GT i mm10.chr1 I 1520 C 0 e canFam3.chr7 36383073 0 + 80974532 C e calJac3.chr19 14237156 0 - 49578535 C e ponAbe2.chr1 226347824 335 - 229942017 M a score=7200.000000 s hg38.chr1_KI270759v1_alt 226832 2 + 425601 gG s panTro4.chr1 224981431 2 + 228333871 gG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140232320 2 - 143122389 gG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16943097 2 - 229590362 gG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223705872 2 - 227556264 gG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16756443 2 - 220367699 gg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82554445 2 + 85787240 gG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178814338 2 + 195471971 GG i mm10.chr1 C 0 C 0 s canFam3.chr7 36383073 2 + 80974532 GG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14237156 0 - 49578535 C e ponAbe2.chr1 226347824 335 - 229942017 M a score=153821.000000 s hg38.chr1_KI270759v1_alt 226834 62 + 425601 GGAA-ATTTTTAAGGG-----------TAAATTCACAGCGATGATTTCCATTGGTTAACTCTGTGCATTAACAT s panTro4.chr1 224981433 63 + 228333871 GGAAGATTTTTAAGGG-----------TAAATTCACAGCGATGATTTCCATTGGTTAACAGTGTGCATTAACAT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140232322 63 - 143122389 GGAAAATTTTTAAGGG-----------TAGATTCACAGTGATGATTTCCACTGGTTAACACTGTGCATTAACAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16943099 62 - 229590362 GGAAAA-TTTTAAGGG-----------TAAATTCACAGCAGTGATTACCACTGGTTAACACTGTGCATTAACAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223705874 63 - 227556264 GGAAAATTTTTAAGCG-----------TAAATTCACAGCAGTGATTACCACTGGTTAACACTGTGCATTAACAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16756445 63 - 220367699 gGAAAATTTTTAAGGG-----------TAAATTCACAGCAGTGATTACCACTGGTTAACACTGTGCATTAACAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82554447 63 + 85787240 GGAAGATTTTTAAGGG-----------TAAATTCACAGCGATGATTACCACTGGTTAACACTGTGCATTAACAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14237156 62 - 49578535 -GGGAATTTTTAAGGG-----------TAAATTCACAGCGATTATTACCATTGGTTAACATTGTGCATTAACAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178814340 68 + 195471971 GGATGATTTGTAAGAGAA------GGATAAATGCCCAGCCATTCTTACCTAAGGCTAACGTCCAGTATTCCTGC i mm10.chr1 C 0 C 0 s canFam3.chr7 36383075 73 + 80974532 -GTAAATTCTTAAGAGAAGAATACGGGTGAATTCATAGAAATTATCACCGTGGGTGAGTGTTGTACATTATATT i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226347824 335 - 229942017 M a score=3097519.000000 s hg38.chr1_KI270759v1_alt 226896 885 + 425601 GCAAATGTCAATCCATTTCCAAATGATAACAGTGCCTGGCTGTAGTATTTTAACATGATATTGTTTGAGGCTAATGGCCA-CCATG--TTTGCCTCCTAGCAGTAAACATGTTATTTGAAGTCATGTCATGAATTACCTTCCTGCACTAATGAAATAGATAATTTACATAAAAATCAGGAAAAAAAAAACCCCAGCCCCATA-----TGCTTTTCAATCTCTAGAGCCATGGAAATGACCTCCCTGACAGCCAATTAGAAAATACAAAGG-------TGAAGGTGGATGCTCTTATTCCCGATAC-GGAGAAGTTCCAGA-ATGAC--TAGCGTGCTTCTTGGCTATGCCCAAATACTTTTAAGTAGGTGTTATTTCATAATAAAGCATTA----------------ATGGTGTTTGTT-----ACATGTG--GATGAATATCTTCACTGTGTCTGGGAGCTCTGCCTCA-GAACGTAGGATCTT-GTTCCCTATCCCTGCTGTTTATAATCTGTTTTATTACCTTCTCCCACTGTGTCATGGACCGGATGGTTTTTCTAGGGGCTGCTGTGATCTGTCTTGTCATTGCTTATTATCAGATAGCCTTAATCCTCAGAACATTGAAATAGTTCTATAATGGCACGTGAGCCATGGCAGCCCACAGCAGCAC---TGGCCATTTTCACATGAAATGGCAGCCTGGATTGTCCTTTACATGCTGACAGGGGAGACTGTCCATCTGCCACCCCTGTCCTGGGTCGGGACCCTTTCTGTTCAGCAGGTGCAGTGG---CTCTGAGAGTCTC-------ACAGTTTTTCAGTTGATATCTCACCCATC----AATTACCTGGGTTGGATTT-GTAGAGCTCGAATGACCTCTTAAATTTTAT--AAACA-CTTTACCC-ACCTATT-TGA-GCATCCCACACTTGAGCA-CCCCTCAGAC s panTro4.chr1 224981496 868 + 228333871 GCAAATGTCAATCCATTTCCCAATGATAGCAGTGCCTGGCTGTAGTAT---------------TTTGAGGCTAATGGCCA-CCATG--TTTGCCTCCTAGCAGTAAACATGTTATTTGAAGTCATGTCATGAATTACCTTCCTGCACTAATGAAATAGATAATTTACATAAAAATCAGGAAAAAAAAAAACCCAACCCCCTA-----TGCTTTTCAATCTCTAGAGCCATGGAAATGACCTCCCTGACAGCCAATTAGAAAATACAAAGG-------TGAAGGTGGATGCTCTTATTCCCGATAC-GGAGAAGTTCCAGA-ATGAC--TAGCATGCTTCTTGGCTATGCCCAAATACTTTTAAGTAGGTGTTATTTCACAATAAAGCATTA----------------ATGGTGTTTGTT-----ACATGTG--GATGAATATCTTCACTGTGTCTGGAAGCTCTGCCTCA-GAACGCAGGATCTT-GTTCCCTATCCCTGCTGTTTATAATCTGTTTTATTACCTTCTCCCAC--TGTCATGGACCGGATGGTTTTTCTAGGGGCTGCTGTGATCTGTCATGTCATTGCTCATTATCAGATAGCCTTAATCCTCAGAACATTGAAATAGTTCTATAATGGCACGTGAGCCATGGCAGCCCACAGCAGCAC---TGGCCATTTTCACATGAAATGGCAGCCTGGATTGTCCTTTACATGCTGACAGGGGAGACTGTCCATCTGCCACCCCCGTCCTGGGTCGGGACCCTTTCTGTTCAGCAGGTGCAGTGG---CTCTGAGAGTCTC-------ACAGTTTTTCAGTTGATATCTCACCCATC----AATTACCTGGGTTGGATTT-GTAGAGCTCGAATGACCTCTTAAATTTTAT--AAACA-TTTTACCC-ACCTATT-TGA-GCATCCCACACTTGAGCA-CCCCTCAGAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226348159 894 - 229942017 GCAAATGTCAATCCATTTCCAAATGATAACAGTGCCTGGCTGTAGTATTTTCACATGATATTGTTTGAGGCTAATGGCCA-CCATG--TTTGCCTCGTAGCAGTAAACATTCTATTTGAAGTCATGTCATGAATTACCTTCCTGCACTAATGAAATAGATAATTTACATAAAAATCAGAAAAAAAAAAAACCCAGCCCCACA-----TGCTTTTCAATCTCTGGAGCCATGGAAATGACCTCCCTGACAGCCAATTAGAAAATATAAAGG-------TGAAGGCGGGTGCTCTTATTCCCGATAC-AGAGAAGTTCCAGA-ATGAC--TAGCATGCTTCTTGAATATGCCCGAATACTTTTAAGTAGGTGTTACTTCACAATAAAGCATTA----------------ATGGTGTTTGTT-----ACATGTGGTGATGAATATCTTCACTGTGTCTGGAAGCTCTGCCTCAGGAACGTGGGATCTTCGTTACCTATCCCTGCTGTTTATAATCTGTTTTATTATCTTCTCCCCCTGTGTCATTGACCGGGTTGTTTTTCTAGGGGCTGCTGTGGTCTGTCATGTCGTTGCTCATTATCAGATAGCCTTAATCCTCAGAACATTGAAATAGTTCTATAATGGCATGTGAGCCATGGCAGCCCACAGCAGCAC---TGGCCATTTTCACATGAAATGGCAGCCTGGATTGTCCTTTACATGCTGACAGGGGAGACTGTCCATCTGCCACCCCCGTCCTGGGTCAGGACCCTTTCTGTTCAGCAGGTGCAGTGG---CTCTGAGAGTCTC-------ACAGTGTTTCAGTTAATATCTCACCCATC----AATTACCTGGGTTGGATTT-GTAGAGCTCGAATGACTTCTTAATTTTTATTAAAACATTTTTACCCAACCTATT-TGAGGCATCCCACACTTGAGCA-CCCCTCAGAC i ponAbe2.chr1 M 335 C 0 s nomLeu3.chr5 140232385 884 - 143122389 GCAAATGTGAATCCATTTCCAAATGATAACAGTGCCTGGCTGTAGTATTTTAACATGATATTGTTTGAGGCTAATGGCCA-CCATG--TTTGCCTCCTAGCAGTAAACATTTTATTTGAAGTCATGTCATGAATTACCTTCCTGCACTAATGAAATAGATAATTTACATAAAAATCAG-AAAAAGAAAACCCCAAACCCATA-----TGCTTTTCAATCTCTAGAGCTATGGAAATGACCTCCCTGACAGCCAATTAGAAAATACAAAGG-------TGAAGGCAGATGCTCTTATTCCCGATAC-GGAGAAGTTCCAGA-ATGAC--TAGCATGCTTCTTGGCTATGCCCAAATACTTTTAAGTAGGCGTTATTTCACAATAAAGCATTA----------------ATGGTGTTTGTT-----ACATGTG--GATGAAGATCTTCACTGTGTCTGGAAGTTCTGCCTCA-GAACGTAGGATCTT-GTTACCTATCCCTGCTGTTTATCATCTGTTTTATTATCTTCTCCGCCTATGTCATTGACTGGATGGTTTTTCTAGGGGCTGCTGTGATCTTTCATCTCATTGCTCATTATCAGACAGCCGTAATCCTCAGAACATGGAAATAGTTCTATAATGGCACATGAGCCATGGCAGCCCACGGCAGCAC---TGGCCATTTTCACATGAAATGGCAGCCTGGATTGTCCTTTATATGCTGACAGAGGAGACTGTCCATCTGCCACCCCCGTCCTGGGTCGGGACCCTTTCTCTTCAGCAGGTGCAGCAG---CTCTGAGCGTCTC-------ACAGTTTTTCAGTTGATATCTCACTCGTC----AATTACCTGGGTTGGATTT-GTAGAGCTCGAATGACCTCTTAATTTTTAT--AAACA-TTTTACCC-ACCTATT-TGA-GTATCGCACACTTGAGCA-CCCCTCAGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16943161 879 - 229590362 GCAAATGTCAATCCATTTCCAAATGATAACAGTGCCTGGCTGTAGTATTTTAACATGATATTGTTTGAGGCTAATGGTCA-CCATG--TTTGCCTCCTAGCAGTAAACATTTTATTTGAAGTCATGTcctgaattactttcctgcactcatgaaatagatgatttgcataaaaat----aaaaaaaaaaacccagccccata-----tgcttttcagtctctagagacatagaaatgacctccctgacagccaattagaaaATACAAAGG-------TGAAGGCTGATGCTCTTAGTCCCAATAT-GGA-AAGTTCCAGA-ATGAC--TAGCGTGTTTCTGGGCTACACCCAAATACTTTTAAGTAGGTGTTATTTCACAATAAAGCATTA----------------ATGGTGTTCGTT-----ACATGTA--GATGAGTAGCTTCACTGTGTCTGGAAGCTCTGCCTCA-GAACATAGGATCTT-GTTACCTATCCCTGCTGTTTATAATCTGTTTTATTGTCTTCTCCCCCTGTGTCATTGACCGGATGGTTTTTCTAGGGGCTGCTGTAATCTGTGATGTTGTTGCTCATTGTCAGATAGCCTTAATCCTCAGAACATTGACATAGTTCTATAATGGTACGTGAGCCATGGCAGCCCACGGCAGCAC---TGACCATTTTCACATGAAATGGCAGCCTGGATTGTCCTTTGCATGCTGACAGGGGAGACTGTCCATCCACCACCCC-GTCCT-GGTCAGGACCCTTTCTGTTCGGCAGGTGCAGCGG---CTCTGAGAGTCTC-------ATGGTTTTTCAAGTGATATCTCACTCATC----AATTACCTGGGTTGGATTTAGTGGAGCTCGAATGACCTCTTAATTTTTAT--AAACA-TTTTACCC-ACCTATT-TGA-GTATCCCACACTTGAGCA-ACCCTCAGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223705937 878 - 227556264 GCAAATGTCAATCCATTTCCAAATGATAACAGTGCCTGGCTGTAGTATTTTAACATGATATTGTTTGAGGCTAATGGTCA-CCATG--TTTGCCTCCTAGCAGTAAACATTTTATTTGAAGTCATGTcctgaattactttcctgcactcatgaaatagatgatttgcataaaaat-----aaaaaaaaaacccagccccata-----tgcttttcagtctctagagacatagaaatgacctccctgacagccaattagaaaATACAAAGG-------TGAAGGCTGATGCTCTTAGTCCCGATAT-GGA-AAGTTCCAGA-ATGAC--TAGCATGTTTCTGGGCTACACCCAAATACTTTTAAGTAGGTGTTATTTCACAATAAAGCATTA----------------ATGGTGTTCGTT-----ACATGTG--GATGAGTAGCTTCACTATGTCTGGAAGCTCTGCCTCA-GAACATAGTATCTT-GTTACCTATCCCTGCTGTTTATAATCTGTTTTATTGTCTTCTCCCCCTGTGTCATTGACCGGATGGTTTTTCTAGGGGCTGCTGTAATCTGTGATGTTGTTGCTCATTGTCAGATAGCCTTAATCCTCAGAACATTGACATAGTTCTATAATGGTACGTGAGCCATGGCAGCCCACGGCAGCAC---TGACCATTTTCACATGAAATGGCAGCCTGGATTGTCCTTTGCATGCTGACAGGGGAGACTGTCCGTCCACCACCCC-GTCCT-GGTCAGGACCCTTTCTGTTCGGCAGGTGCAGCGG---CTCTGAGAGTCTC-------ATGGTTTTTCAAGTGATATCTCACTCATC----AATTACCTGGGTTGGATTTAGTGGAGCTCGAATGACCTCTTAATTTTTAT--AAACA-TTTTACCC-ACCTATT-TGA-GTATCCCACACTTGAGCA-ACCCTCAGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16756508 878 - 220367699 GCAAATGTCAATCCATTTCCAAATGACAACAGTGCCTGGCTGTAGTATTTTAACATGATATTGTTTGAGGCTAATGGTCA-CCATG--TTTGCCTCCTAgcagtaaacattttatttgaagtcATGTCCTGAATTACTTTCCTGCACTCATGAAATAGATgatttgcataaaaat-----aaaaaaaaaacccagccccATA-----TGCTTTTCAGTCTCTAGAGACATAGAAATGACCTCCCTGACAGccaattagaaaatacaaagg-------tGAAGGCTGATGCTCTTAGTCCCGATAT-GGA-AAGTTCCAGA-ATGAC--TAGCATGTTTCTGGGCTACACCCAAATACTTTTAAGTAGGTGTTATTTCACAATAAAGCATTA----------------ATGGTGTTCGTT-----ACATGTG--GATGAGTAGCTTCACTGTGTCTGGAAGCTCTGCCTCA-GAACATAGGATCTT-GTTACCTATCCCTGCTGTTTATAATCTGTTTTATTGTCTTCTCCCCCTGTGTCATTGACCGGATGGTTTTTCTAGGGGCTGCTGTAATCTGTGATGTTGTTGCTCATTGTCAGATAGCCTTAATCCTCAGAACATTGACATAGTTCTATAATGGCACGTGAGCCATGGCAGCCCACGGCAGCAC---TGACCATTTTCACATGAAATGGCAGCCTGGATTGTCCTTTGCATGCTGACAGGGGAGACTGTCCATCCACCACCCC-GTCCT-GGTCAGGACCCTTTCTGTTCGGCAGGTGCAGCGG---CTCTGAGAGTCTC-------ATGGTTTTTCAAGTGATATCTCACCCATC----AATTACCTGGGTTGGATTTAGTGGAGCTCGAATGAcctcttaatttttat--aaaca-ttttaccC-ACCTATT-TGA-GTATCCCACACTTGAGCA-ACCCTCAGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82554510 878 + 85787240 GCACATGTCAATCCATTTCCAAATGATAACAGTGCCTGGCTGTAGTATTTTAACATGATATTGTTTGAGGCTAATGGTCA-CCATG--TTTGCCTCCTAGCAGTAAACATTTTATTTGAAGTCATGTCATGAATTACTTTCCTGCACTAATGAAATAGATAATTTGCATAAAAAT------TTAAAAAAACCCAGACCCATA-----TGCTTTTCAATCTCTAGAGACATAGAAATGACCTCCCTGACAGCCAATTAGAAAATACAAAGG-------TGAAGGCTGGTGCTCTTATTCCTGATAC-GGAGAAGTTCCAGA-ATGAC--TAGCATGTCTCTGGGCTACACCCAAATACTTTTCAGTAGTTGTTATTTCACAATAAAGCGTTA----------------ATGGTGTTCGTT-----ACATGTG--GATGAGTATCTTCACTGTGTCTGGAAGCTCTGCCTCA-GAACGTAGGATCTT-GTTACCTATCCCTGCTGTTTATAATCTGTTTTATTGTCTTCTCCCGCTGTGTCATTGACCGGATGGTTTTTCTAGGGGCTGCTGTGATCTATGATGTCGTTGCTCATTGTCAGATAGCCTTAATCCTCAGAACATTGAAATAGTTCTATAATGGCTCATGAGCCATGGCAGCCCACGGCAGCAC---TGACCATTTTCACATGAAATGGCAGCCTGGATTGTCCTTTACATGCTGACAGGGGAGACTGTCCGTCTGCCACCCT-GTCCT-GGTCAGGACCCTTTCTGTTCGGCAGGTGCAGCGG---CTCTGAGAGTCTC-------ACAGTTTTTCAGGTGATATCTCACCCATC----AATTACCTGGGTTGGATTTAGTGGAGCTCGAATGACCTCTTAATTTTTAT--AAACA-TTTTACCC-ACCTATT-TGA-GCATCCCACACTTGAGCA-ACCCTCAGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14237218 824 - 49578535 GCAAATATCAATCCATTTCCAAATTATAACAATGCCTGGCTGTCATATTTTAACACGATATTGTTTCAGGCTAATGGTCA-CCATGTTTTTGCCTCCTAGCAGTAAACATTTTATTTGAAGAAATGTCATGAATTATCTTCCTGCACTAATGAAATAGATGACTTACAT-----------TAAAAAAAACCCAGAACCCGTA-----TGCTTTTCAGTCTTTTGAGACATGGAAATGACCTCCCTGGCAGCCAATTAGAAAATACAAAGG-------TGGAGGAGGATGCTCTTATTCCCGACAT-GGAGAAGCTCCAG----GAC--TAGCACGCCTCACGGCTACG-CCGAATACT------------TTATTTCACAATAAAGCATTA----------------CTGGTGTTTGTT-----ACATGTG--GATGAATACCTTCACTGTTTCTGGCTGCTCTGCCTCA-GAACATAGGATCTT-GTTACCTATCCCTGCTGTTTATAAGCTGTTCTATTATCTTCTCCC-CTGTGTCATTGACTGGATGGTTTTTCTAGGGGCTGCTGTGATCTGTCATGTCATTGCTCGTTATCAGAGAGCCTTCATCCTCAGGACATTGAAATATTTTTATAATGGTACATGAGCC-----------------------------------------ATGGCAGCCTTGATTGTCTTTTGCATGCTGACAGGGGAGACTGTGCATCTGCCACCTGTGTCCTAGGTCGGGACCCTTTCTGTCCAGCAGGTGCAGCGG---CTCTGG--GTCTC-------ACAGTTTTTCAGCTGATGTCGCACCCATCCGTTCGTTACCTGGTTTGGATTCAGTAGAGCTCAAATGACCTCTTGATTTTTAT--AAACA-TTTTAGCC-ACCTATT-TGG-GCATCACACACTTGAGCA-CCCCTCAGAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178814408 876 + 195471971 ACAAAACTCAATCCATTTTCAAGTTATGACAC--ATTTCCTGTAATGTTTTAATGTGATATTG-TTGAGGGTAATGGCCAGCCGTG-CTTTGCCTCCTAGCAGTGAATGT-TTATCTGAAGTCATGTCACGAATTATCTTTCTGCACTAATGACATGGATCATTTGCATAAAAAT-----CAGGATGACTCCAAAGCCCATATGTTTTGTTTTTCAGTCTTTGGAGCCATAGAACTGTCCTTCCTGATAGCCAGTTAGGAAATAGGAAGGCAATGGATGTGGGAGGGCACTCT---TCCTGAT-T-GTGGGAATTCCAAA-ACGCCGATGGTATATTTCACAGCCCAGCCAGAAGGCTTAGAAACAGGTGCTATTTCAAGATGAGGCACGG----------------CTGGTGTTTGTT-----ACACGTG--GATGGGTATCTTAACTCTCTCCAGAGGGTCTGCCTTG-AACCACAAGCTCTT-GCCACCTCCCCTGCCTATTTATAATCTGTTTTATTATCTCCGCTCCCTGTGTCATTGACCCTGTGGATTTTCTGGTAACTCCTGTGATCTGTCATGTCATCGCTCATTATTAGAGAGTCTTAATCCTCTGAGCATTGAAATATTTCCGTGATGGCACAGAAGCCCTG----------ATGGCAC---CAGCCGCTTTCACACTAAATTGCAGCTTGGGTTGTCCTTCACGTGCTGATGGAGGCGATTTGACTGTCATGGTCCCACTCCTAGGTCAGGACCCTGTCAGGGCAGCAGGTGTGGCCG----TGTGATGGCCTT-------GTCATTTTTCAGATGA--TCCCTGCCATG----TGTTGTCCCA-TTGGATTGAATAGACCTTGAATGATCTCTAAATTTGTGT--AAACA-CTTCCCCC-ACCTTTTCTGA-GCTTCCCACCTGTGAACA-CCCCTCAGAC i mm10.chr1 C 0 I 47 s canFam3.chr7 36383148 878 + 80974532 GTAGACGTCAATTCACTTTCAAACTCTCATAGTGTCTGGCCGCAGTGTTTT-ATGCAAAGTTGGGTGAGGTTAATGGTCAGCCGTG--TTTTGCTCCTAATGGTAAACATTTTATTTGAAGTCATGTCATGAATTATCTTCCCGCACTAATGAAATGGATCATTTACATAAAAGT-----CAGAAAAACCCCAAGACCCATA-----TGCTTTTTAGCCTCCAGAGACATGGAAATGACCCCAGTGACAGCCAATTACAGCGTAGAAAGG-------TGAAGGAGGACGCTTTTTTTTTCTCTACAGGAGAGGCTCCAAACACGGC--------------------------AGTGCTTTCAAATCGGTGTTATTTCAAAACGACGCCTAACTGGGGTTTTGTTGCTGTGGTTTTTGTTTTTTAACGTGCA--CGTGGACGTCTTACCTGTCTCCAGAAGCTTTGCCTCA-GCCCACTGGTCCTT-GGCACATATCCTCTTTATTTATAATCCGCTTTATTTTCTTCGACCCCTGCGTCATTGACCCCATGGATTTCCTAGGCACTGCTGTGATCTGTCAAGTCATTGGTCGTTATCCGGCAGTCTTAATCCTCAGAGCATTGAAATA-TTTTATAATGGCACA--AGCCATTGTAGCCCATGGCAGCCCCAGCAGCCACTGCGACGTGAAATGGAACTTTGGGTTGTCTTTAACATGTGGACAGTGGACACCCTACCACCACTGCCCC-CTCCTGCATCAG--------CTGATGTGGCAGTGGAGAGGGGCCTCCCCCACCCTCCTCCGGAGCAGTTCTTCACCTGATGCCTCACC--------AGTTGCCTGCGTCCAATTTAGTAGAGCTTGAATGACCTCGTAATTTGTAT--AAACT-GTTTACCC-ACCTATC-TAA-GCATCTCACATGTGAACACCCCCTCAGAT i canFam3.chr7 C 0 I 150 a score=1085357.000000 s hg38.chr1_KI270759v1_alt 227781 308 + 425601 AAGATGAAATATTCTTAG-------------------------------------------------GATAGGGTTAGGAACAC---------ACAGTATTCCTGAAACTTT---TAAAGATATAGAG-GTCCTT-------------------A------AAAATT-------------------------------------------------ACCATATTGCCTGATTTTCCTGTCTGTGCCCCAAGGAAA-GTTCTATTCTTCATGAAGCTAATAATTTTTAAAAGA--TTGCTAGGTCAATATTTTAGTAATCTTTAGACACTAAGGATAGGAGATTTCAATTTAATTCTCATGAGATGCACTTAGAATGACGGGTTTTCCATTTGAACACCCTGCAGTTCTCACAATCCAGGGTAATAGTCTGACAAATAGTCTATTATA s panTro4.chr1 224982364 302 + 228333871 AAGATGAAA------TAG-------------------------------------------------GATAGGGTTAGGAACAC---------ACAGTATTCCTGAAACTTT---TAAAGATATAGAG-GTCCTT-------------------A------AAAATT-------------------------------------------------ACCATATTGCCTGATTTTCCTGTCTGTGCCCCAAGGAAA-GTTCTATTCTTCATGAAGCAAATAATTTTTAAAAGA--TGGCTAGGTCAATATTTTAGTAATCTTTAGACACTAAGGATAGGAGATTTCAATTTAATTCTCATGAGATGCACTTAGAATGAAGGGTTTTCCATTTGAACACCCTGCAGTTCTCACAATCCAGGGTAATAGTCTGACAAATAGTCTATTATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226349053 310 - 229942017 AAGATGAAATATTCTTAG-------------------------------------------------GATAGGGTTAGGAACAC---------ACAGTATTCCTGAAACTTT---TAAGGATATAGAG-GTCCTTA------------------A------AAAATT-------------------------------------------------ACCATATTGCCTGATTTTCCTGTCTGTGCCCTAAGGAAAGGTTCTGTTCTTCATGAAGCTAATAATTTTTAAAAGA--TTGCTAGGTCAATATTTTAGTAATCTTTAGACACTAAGGATAGGAGATTTCAGTTTAATTCTCATGAGATGCACTTGGAATGAGGGGTTTTCCATTTGAACACCCTGCAGTTCTCACAATCCAGGGTAATAGTCTGACAAATAGTCTATTACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140233269 308 - 143122389 AAGATGAAATATTCTTAG-------------------------------------------------GATAGGGTTAGGAACAC---------ACAGTATTCCTGAAACTTT---TAAAGATATAGAG-GTCCTT-------------------A------AAAATT-------------------------------------------------ACTGTATTGCCTGATTTTCCTGTCTGTGCCCTAAGGAAG-GTTCTATTCTTCATGAAGCTAATAATTTTTAAAAGA--TTGCTAAGTCAATATTTTAGTAATCTTTAGACACTAAGGATAGGAGATTTCAATTTAATTCTCATGAGATGCACTTAGAATGAGGGGTTTTCCATTTGAACACCCTGCAGTTCTCACAATCCAGGGTAATAGTCTGACAAATAGTCTATTACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16944040 308 - 229590362 AAGATGAAATATTCTTAG-------------------------------------------------GATAGGGTTAGGAACAC---------ACAGTATTCCTAAAACGTT---TAAAGATGTAGAG-GTCCTT-------------------A------AAAATG-------------------------------------------------ACCGTATTGCCTGATTTTCCTGTCTGTGCCCTAAGGAAA-GTTCTATTCTTCATGAAGCCAATAATTTTTAAAAGA--TTGCTAGGTCAATATTTTAGTAATCTTTAGACACTAAGGATAGGAGGTTTCAATTTAATTCTCATGAGATGCACTTAGAATGAGGGGTTTTCCATTTTAACCCCCTGCAATTCTCACAATCCAGGGTAAGAGTCTGACAAATAGTCTATTACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223706815 308 - 227556264 AAGATGAAATATTCTTAG-------------------------------------------------GATAGGGTTAGGAACAC---------ACAGTATTCCTAAAACGTT---TAAAGATGTAGAG-GTCCTT-------------------A------AAAGTG-------------------------------------------------ACCGTATTGCCTGATTTTCCTGTCTGTGCCCTAAGGAAA-GTTCTATTCTTCATGAAGCCAATAATTTTTAAAAGA--TTGCTAGGTCAATATTTTAGTAATCTTTAGACACTAAGGATAGGAGGTTTCAATTTAATTCTCATGAGATGCACTTAGAATGAGGGGTTTTCCATTTTAACCCCCTGCAATTCTCACAATCCAGGGTAAGAGTCTGACAAATAGTCTATTACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16757386 308 - 220367699 AAGATGAAATATTCTTAG-------------------------------------------------GATAGGGTTAGGAACAC---------ACAGTATTCCTAAAACATT---TAAAGATGTAGAG-GTCCTT-------------------A------AAAATG-------------------------------------------------ACCGTATTGCCTGATTTTCCTGTCTGTGCCCTAAGGAAA-GTTCTATTCTTCATGaagccaataatttttaaaaga--ttgctaGGTCAATATTTTAGTAATCTTTAGACACTAAGGATAGGAGGTTTCAATTTAATTCTCATGAGATGCACTTAGAATGAGGGGTTTTCCATTTTAACCCCCTCCAATTCTCACAATCCAGGGTAAAAGTCTGACAAATAGTCTATTaca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82555388 308 + 85787240 AAGATGAAATATTCTTAG-------------------------------------------------GATAGGGTTAGGGACAC---------ACAGTATTCCTAAAACGTT---TAAAGATGTAGAG-GTCCTT-------------------A------AAAATG-------------------------------------------------ACCATATTGCCTGATTTTCCTGTCTGCGCCCTAAGGAAA-GTTCTATTCTTCATGAAGCTAATAATTTTTAAAAGA--TTGCTAGGTCAATATTTTAGTAATCTTTAGACACTAAGGATAGGAGGTTTCAATTTAATTCTCATGAGATGCACTTAGAATGAGGGGTTTTCCATTTTAACCCCCTGCAATTCTCACAATCCAGGGTAATAGTCTGACAAATAGTCTATCACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14238042 304 - 49578535 AAAATGAGATATTCTTAG-------------------------------------------------GATAGGGTTAGGGACAC---------ACAATATTCCTAAAA-GTT---TAAAGGGATAGAG-GTCATT-------------------A------ATAGTG-------------------------------------------------ACTGTATTGCCTGATTTTCCTGTCTGTGCCCGAAGGAAA-GTTCTATTTGTCATGTAGCTAATAATTTTTAAAAGA--TTGCTAGGTAAATGTGTCAGTAATCTTCAGACACTAAGGATAGTAGATTTCAATTTAATTCTCATGAGATGTGCTTAGAATTA---GTTTTTCATTTAAACACCCTGCAATTCTGACATGCCAGGGTAATAATTTAACAAACAGTCTATTATA i calJac3.chr19 C 0 C 0 s mm10.chr1 178815331 428 + 195471971 AAAGTTAAAGGTCCTTAAAAAACAACTCTGTAAAACGAGACTGTGGGGGAGGTTATGGGAGAGGGATGGTGGGGTGGGGGGAACTTCTCAACAACACTGTGCTTGAAAGATGTCATAATGGTATATAG-TATCTTACTTGGTAAACTGAAGACta------aaaattaattaattaaataGAAGGAAAGTTTGTAAATTAAAAAAAAAAACAATAAACTGTATTGCCTGATTTTTCTGACCAATCTTTAAGGAAA-GTTCTACTC-TCGTGAAGCTAGTAATTCTTCAAAAA--TGTTAAAGTCTATAGTATAGTGATCATTCCACATCAAGGTAGATAGGCTCCGATGTAGTTATCTTGAGATACACTGAAGA--------TTTCTATTTAATTGCAACACACTTTTGAAAGTCCAGAATTTCCATCTAATAAACAGTCTATCACA i mm10.chr1 I 47 I 518 s canFam3.chr7 36384176 305 + 80974532 AAGAGGAAATGCTCTCAG-------------------------------------------------AATGTGGTTAGCAACAC---------ACAGTATG--TTGAATTTT---AAAAAGGATAGTGAATCCTT-------------------AAAAAAGAAAATG-------------------------------------------------ACTGTACTGCCTGATACTCCTGCCTGTTCCCAAAGGAAA-GTTCTGTTTTTCATGACGCCAATAATTCTTAAGAGATTTTGCTAGGTCAATATTTTAATAATTTCTAGACACTTAAGGGGGCAGACCCCAATTGAACTCTTATGAGATACACTTATCATGAAGTACTTTCCATTTAAGCACCCCACAATTCTGAAAATTCAAGAT----------CAAATAGTCTATTGCA i canFam3.chr7 I 150 C 0 a score=1150112.000000 s hg38.chr1_KI270759v1_alt 228089 381 + 425601 CAATTAC---AAAAAAAAAAAAGTCAAAATCAAGTTCCCCCTCTAATCTACATAATTGAGACCTAAGACTTTCCCTGCACTTAAA-GCCATTGAATCCACCAGATGAGTGTGGACCTCATTTTTT-------------------TAGGTTTGGGTAGATCTGGCCAATGAGAGCAAGTAACCATCCTA-TGTGAAGTTCATTTCAGTTCTAAACTGATCCTTGAATTCAGATATTGTCATATTGATGCATTAGGAGAATTGTCTTGGGTGTGAGATGAGTGAGGCTATGGAGAGAAAGGACTGGCACTCAGAGGG------AAGACTGAGCTTACTGGG--ACATTCTAGCCAAGGACAGGCTACTGCTCTTCTCCTCACTGCCTGATAATGCTCAGTGTGGCACCAC-----------------------------ttttt s panTro4.chr1 224982666 381 + 228333871 CAATTACAAAAAAAAAAAAAAAGTCAAAATCAAGTTCCCCCTCTAATCTATATAATTGAGACCTAAGACTTTCCCTGCACTTAAA-GCCATTGAATCCACCAGATGAATACGGACCTCATTTTTT-------------------TAGGTTTGGGTAGATCTGGCCAATGAGAGCAAGTAACCATCCTA-TGTGAAGGTCATTTCAGTTCTAAACTGATCCTTGAATTCAGATATTGTCATATTGATGCATTAGGAGAATTGTCTTGGGTGTGAGATGAGTGAGGCTATGGAGAGAAAGGACTGGCACTCAGAGGG------AAGACTGAGCTTACTGGG--ACGTTCTAGCCAAGGACAGGCTACTGCTCTTCTCCTCACTGCCTGATAATGCTCAGTGTGGCACC--------------------------------tttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226349363 394 - 229942017 CAATTAC----AAAAAAAAAAAGTCAAAATCAAGTTCCCCCTCTAATCTATATAATTAAGACCTAAGACTTTCCCTGCACTTAAACCCCATTGAATTCACCAGATGAGTACGGACCTCATTTTTT-------------------TAGGTTTGGGTAGATCTGGCCAATGAGAGCAAGTAACCATGCTA-TGTGAAGGTCATTTCAGTTCTAAACTGATCCTTGAATTCAGATATTGTCATACTGATGCATTAGGAGAATTGTCTTTTGTGTGAGATAAGTGAGGCTATGGAGAGAAAGGACTGGCACTCAGAGGG------AAGACTGAGCTCACTGGG--ACATTCTAGCCAAGGACAGGCTACTGCTCTTCTCCTCACTGCCTGATAATGCTCAGTGTGGCGCCACtttt----------------tttttttttttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140233577 383 - 143122389 CAATTAC----AAAAAAAAAAAGTCAAAATCAAGTTCTCCA-CTAATCTATATAAGTGAGACCTAAGACTTTCCCTGCACTTAAA-CCCGTTGAATCCACCAGATGAGAACGGACCTCATTTTTT-------------------TAGGTTTGGGTAGATCTGGCCAATGAGAGCAAGTAACCATCCTA-TGTGAAGGTCATTTCAGTTCTAAACTGATCCTTGAATTCAGATATTGTCACATTGATGCATTAGGAGTATTGTCTTTTGTGTGAGATGAGTGAGGCTATGGAGAGAAAGGACTGGCACTCAGAGGG------AAGACTGAGCTCACTGGG--ACGTTCTAGCCAAGGACAGGCTACTGCTCTTCTCCTCGCTGCCTGATAATGCTCAGTGTGGCGCCAC-------------------------ttttttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16944348 408 - 229590362 CAATTAC-----AAAAAAAAAAGTCAAAATCAAGTTCCCCCTCTAATCTGTATGACCGAGACCTAAGACTTTCCCTGCACTTAAA-CCCATTGAATCTACCAGATAAGTATGGACCTCATTTTTT-------------------TAGGTTTGGGGAGATCTGGCCAATGAGAGCAAGTAACCACCCTATTGTGAAGGTCATTTCAGTTCTAAACTGATCCTTGAATTCAGATATTGTCATATTGATGCATTAGGAGAATTGTCTTTTGTGTGAGATGAGTGAGGCTATGGAGAGAAAGGACTGGCACTCAGAGGGAAGGCAAGGCCTGAGTTCACTGGG--ACATTCTAGCCAAGGACAGGCTACTGCTCTTCTCCTCACTGCCTGATAATGCTCAGTGTGGCACCACtgtt-------tttttttgtttgtttgtttgttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223707123 417 - 227556264 CAATTAC---AAAAAAAAAAAAGTCAAAATCGAGTTCCCCCTCTAATCTATATGACCGAGACCTAAGACTTTCCCTGCACTTAAA-CCCATTGAATCCACCAGATAAGTATGGACCTCATTTTTT-------------------TAGGTTTGGGGAGATCTGGCCAATGAGAGCAAGTAACCACCCTATTGTGAAGGTCATTTCAGTTCTAAACTGATCCTTGAATTCAGATATTGTCATATTGATGCATTAGGAGAATTGTCTTTTGTGTGAGATGAGTGAGGCTATGGAGAGAAAGGACTGGCACTCAGAGGGAAGGCAAGGCCTGAGTTCACTGGG--ACATTCTAGCCAAGGACAGGCTACTGCTCTTCTCCTCACTGCCTGATAATGCTCAGTGTGGCACCACTGTtttgtttgtttgtttgtttgtttgtttgttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16757694 411 - 220367699 caattac------aaaaaaaaagtcaaaatcgaGTTCCCCCTCTAATCTATATGACCGAGACCTAAGACTTTCCCTGCACTTAAA-CCCATTGAATCCACCAGAGAAGTATGGACCTCAtttttt-------------------tAGGTTTGGGGAGATCTGGCCAATGAGAGCAAGTAACCACCCTATTGTGAAGGTCATTTCAGTTCTAAACTGATCCTTGAATTCAGATATTGTCATATTGATGCATTAGGAGAATTGTCTTTTGTGTGAGATGAGTGAGGCTATGGAGAGAAAGGACTGGCACTCAGAGGGAAGGCAAGGCCTGAGTTCACTGGG--ACATTTTAGCCAAGGACAGGCTACTGCTCTTCTCCTCACTGCCTGATAATGCTCAGTGTGGcaccactgtt---tttttttgtttgtttgtttgtttgttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82555696 402 + 85787240 CAATTAC------AAAAAAAAAGTCAAAATTGAGTT-CCCCTCTAGTCTATATGACTGAGACCTAAGACTTTCCCTGTACTTAAA-CTCATTGAATCCACCAGATAAGTATGGACCTCATTTTTT-------------------TAGGTTTGGGTAGATCTGGCCAATGAGAGCAAGTAACCATCCTATTGTGAAGGTCATTTCAGTTCTAAACTGATCCTTGAATTCAGATATTGTCATATTGCTACATTAGGATAATTGTCTTTTGTGTGAGATGAGTGAGGCTATGGAGAGAAAGGACTGGCACTCAGAGGG-----AAGGCCTGAGTTCACTGGG--ACATTCTAGCCAAGGACAGGCTACTGCTCTTCTCCTCACTGCCTGATAATACTGAATGTGGCACCACTGTt-----tttttgtttgtttgttt-tttgttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14238346 368 - 49578535 CAATTAC----AAAAGAAAAAAGTCAAAATCAAGTTCCCCCTCTAATGTATAAAATTGAGACCTAAGACTTTTCCAACATTTAAA-CCCGTTGAATCCATCAGATAAATATGGATCTCATTTTTT-------------------TAGGTTTGGGTAGATCTGGCCAATGAGAACAAGGAACCATACTA-TGTGAAGGGCATTTCAGTTCTAAACTGACCCTTGAATTCAGAAGTTGTCTTACTGATGTGTTAGGAGAATTGTCTTTTGGG-----------------TGGAGAGAAAGGACTGGCA--CAGAGGG-----AGGGACTGAGCTCGCTGGGTTATATTCTAGCCAAGGACAGGCTATTGCTCTTCTCCTCATGGCCTGAAAATGCTCAGTGTGGCACCACTTTT-------------------------TTtgt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36384481 345 + 80974532 CAAATGC----AAAAAAAAAAAATCATCATAAAATG-CCCCTTTGAT------------GACCTAAGATTTTCCCCCCAACAAAA-CCAATTAAATTTACCAGGTAATTATTTGCCTTATCTTTTTTTTTTTTTTAAatctgaatagatctgaatagatctgGCCAATG---GTAAGTAACCATCCCA-TGTGAAGGTCCTCTCGGTTCTAAACTGATTCCTGGATTCATATATCATCCCA-TAATGTGTTAGGATAGTTGTCAACTGGGTGAGATGA-TAAGGCTAGTGAGAGAAAGGGGTAGAACCCAGAAGG------AA----GAATTCTTAAGG--AGTTCCCAG----------------GCTC----------------ATAAGGCTTAGCATGGCACCACTTTCC----------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178815759 518 + 195471971 I a score=354968.000000 s hg38.chr1_KI270759v1_alt 228470 133 + 425601 ttttttttatt------------tctgagacagagtctcgtgctgtcccccaggctggtgtgcagtggcgtgatcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcaacctcctaaatagctagga s panTro4.chr1 224983047 133 + 228333871 ttttttttatt------------tctgagacagagtcttgtgctgtcccccaggctggtgtgcagtggcatgatcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcaacctcctgaatagctagga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226349757 133 - 229942017 ttttttttttt------------tctgagacagagtctcactctgtcccccaggctggtgtgcagtggcgtgatcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcaacctcctgagtagctagga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140233960 133 - 143122389 ttttttttttt------------cctgagacagagtctcgctctgtcccccaggctggcgtgcagtggcgtgatcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgtctcaaccccctgagtagctagga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16944756 131 - 229590362 gtttgtttTTG------------TCGgagacagagtctcgctttgt-cgccaggctggagtgcagtggcgtgatcttggctcactgcaacctctgtctcccaggttcaagcaattctcctgcctcaacctcctgagtagctagg- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223707540 131 - 227556264 gtttgtttttg------------tctgagacagagtctcgctttgt-ctccaggctggagtgcagtggcgtgatcttggctcactgcaacctctgtctcccaggttcaagcaattctcctgcctcaacctcctgagtagctagg- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16758105 131 - 220367699 gtttgtttttg------------tctgagacagagtctcgctttgt-cgccaggctggagtgcagtggcgtgatcttggctcactgcaacctctgtctcccaggttcaagcaattctcctgcctcaacctcctgagtagctagg- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82556098 143 + 85787240 tttgttttttgttttgttttttctctgagacagagtctcgctttgt-tgccaggctggagtgcagtggcgtgatcttggctcactgcaacctctgtctcccaggttcaagcaattctcctgcctcaacctcctgagtagctagg- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14238714 133 - 49578535 gtgtgtgtgtg------------tgtgtgGcagagtctcgctctgtcacccaggctggagtacagaggtgcgatcatggctcactgcagcctccgcctcctgggttcaagcaactctcctccttcagcctactgagtagctagga i calJac3.chr19 C 0 C 0 e mm10.chr1 178815759 518 + 195471971 I e canFam3.chr7 36384826 0 + 80974532 C a score=30369.000000 s hg38.chr1_KI270759v1_alt 228603 10 + 425601 ttacaggtgt s panTro4.chr1 224983180 10 + 228333871 ttacaggtgt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226349890 10 - 229942017 ttacaggtgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140234093 10 - 143122389 ttataggtgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16944887 8 - 229590362 --acaggtgg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223707671 8 - 227556264 --acaggtgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16758236 8 - 220367699 --acaggtgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82556241 8 + 85787240 --acaggtgt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14238847 10 - 49578535 ttacagatgt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36384826 10 + 80974532 TTACGGGTGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178815759 518 + 195471971 I a score=274630.000000 s hg38.chr1_KI270759v1_alt 228613 87 + 425601 gcgccaccatgcccagctaatttttgtattttcaatagagatggggtttcaccatgttagccaggctggtcttgaactcctgacctc s panTro4.chr1 224983190 87 + 228333871 gcgccaccatgcccagctaatttttgtattttcaatagagatggggtttcaccatgttagccaggctggtcttgaactcctgacctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226349900 87 - 229942017 gcaccaccatgcccggctaatttttgtattttcagtagagatggggtttcaccatgttagccaggctggtcttgaactcctgacctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140234103 87 - 143122389 gcaccaccatgcccggctaatttttgtattttcagtagagatggggattcaccatgttagccaggctggtcttgaactcctgacctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16944895 87 - 229590362 gcgccaccatgcctggctaatttttgtattttcagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223707679 87 - 227556264 gcgccaccatgcctggctaatttttgtattttcagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16758244 87 - 220367699 gcgccaccatgcctggctaatttttgtattttcagtagagatagggtttcaccatgttggccaggctggtcttgaactcctgacctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82556249 87 + 85787240 gcaccaccatgcctggttaatttttgtattttcagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14238857 87 - 49578535 gtaccaccacgcccggctagattttgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctc i calJac3.chr19 C 0 I 372 e mm10.chr1 178815759 518 + 195471971 I e canFam3.chr7 36384836 0 + 80974532 C a score=20628.000000 s hg38.chr1_KI270759v1_alt 228700 6 + 425601 gtgatc s panTro4.chr1 224983277 6 + 228333871 gtgatc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226349987 6 - 229942017 gtgatc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140234190 6 - 143122389 gtgatc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16944982 6 - 229590362 gtgatc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223707766 6 - 227556264 gtgatc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16758331 6 - 220367699 gtgatc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82556336 6 + 85787240 gtgatc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14239316 6 - 49578535 gtgatc i calJac3.chr19 I 372 C 0 e mm10.chr1 178815759 518 + 195471971 I e canFam3.chr7 36384836 0 + 80974532 C a score=215734.000000 s hg38.chr1_KI270759v1_alt 228706 82 + 425601 tgcctgcctcggcctcccagagtgctgggattacaggtgtgagccatcgcacctggccCAC--TTTTTGTTTTTTTATAGGTGT s panTro4.chr1 224983283 82 + 228333871 tgcctgcctcggcctcccagagtgctgggattacaggtgtgagccatcgcgcctggccCAC--TTTTTGTTTTTTTATAGGTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226349993 81 - 229942017 tgcctgcctcagcttcccagagtgctgggattacaggcgtgagccatcgcgcctggccCAC--TTTTT-TTTTAAAATAGATGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140234196 79 - 143122389 tgcctgccttggcctcccagagtgccgggattacaggcgtgagccactgcgcctggccTGC--TTT---TTTTTTTATAGGTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16944988 82 - 229590362 tgcctgccttggcctcccaaagtgctgggattacaggcgtgagccatcactcctggccCAC--TTTTTTTTTTTAAATAGGTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223707772 83 - 227556264 tgcctgccttggcctcccaaagtgctgggattacaggcgtgagccatcactcctggccCAC-TTTTTTTTTTTTAAATAGGTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16758337 80 - 220367699 tgcctgccttggcctcccaaagtgctgggattacaggcgtgagccatcactcctggcccac----tttttttttaaataggtgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82556342 84 + 85787240 tgcccgccttgggctcccaaagtgctgggattacaggcgtgagccatcacgcctggccCACTTTTTTTTTTTTTTAATAGGTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14239322 82 - 49578535 tgcccgccttggccttccagagtgttgggattacaggtgtgagccatcgtgcccagccCAC--TTTTTTTTTTTTAGTAGGTGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178816277 61 + 195471971 CGCCTGCATC--CTCTCCTGA---CTGGGATG----------------GTGCTTAGCACGG--TGCCACTTTCTCGATAGGGGC i mm10.chr1 I 518 C 0 e canFam3.chr7 36384836 0 + 80974532 C a score=1066917.000000 s hg38.chr1_KI270759v1_alt 228788 310 + 425601 TCAGGAAATATTAATTTCATCCTGCTAGAGAGA----C-----TTTTTCCTTGAAATAAGGCACAGATAATTATATGAAGCTAATGGATGTTTAAAGATGTATGCTGGGATAAATAGCTTTAGGAAATATATTGTACTATCCTTGGTAAGAATAAGACAAGTAGTTTTTAAGTTA------------------TGGTA--------------GTTTTTAAGTTA-ATTTTTCTGCTACTGGAAATC--TTATAAAACAACCCATTCA----------------TTTTTTCCTAT--------GAAAGAAAGAACTTATCAGGCATTAATTACATAAAATATACTTCTAATCA-AAATG----TCTTTACCttttc----------tttttttt s panTro4.chr1 224983365 312 + 228333871 TCAGGAAATATTAATTTCATCCTGCTAGAGAGA----C-----TTTTTCCTTGAAATAAGGCACAGATAATTATATGAAGCTAATGGATGTTTAAAGATGTATGCTGGGATAAATAGCTTTAGGAAATATATTGTACTATCCTTGGTAAGAATAAGACAAGTAAATATT-GCTTA------------------TGGTA--------------GTTTTTAAGTTA-AATTTTCTGCTACTGGAAATC--TTATAAAACAATCCATTCG----------------TTTTTTCCTAT--------GAAAGAAAGAACTTATCAGGCATTAATTACATAAAATATACTTCTAATCA-AAATG----TCTTTACCttttc--t-----tttttttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226350074 312 - 229942017 TCAGGAAATATTAATTTTATCCTGCTAGAGAGA----C-----TTTTTCCTTGAAATAAGGCACAGATAATTATATGAAGCTAATGGATGTTTAAAGATGTATGCTGGGATAAATAACTTTAGGAAATATATTGTACTATCCTTGGTAAGAACAAGACAGGTAAATATT-GCTTA------------------TGGTA--------------GTTTTTAAGTTA-ATTTTTCTGCTACTGGAAATC--TTATAAAACAACCCATTCG---------------TTTTTTTCCGAT--------GAAAGAAAGAACTTATCAGGCATTAATTACATAAAATATACTTCTAGTCA-AAATG----TCTTTACCttttc--------tttttttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140234275 311 - 143122389 TCAGGAAATATTAATTTCATCCTGCTAGAGAGA----C-----TTTTTCCTTGAAATAAGGCACAGATAATTATATGAAGCTAATGGGTGTTTAAAGATGTATGCTGGGATAAATAGCTTTAGGAAATATATTGTACTAT-CTTGGTAAGAACAAGACAAGTAAATATT-GCTTA------------------TGGTA--------------GTTTTTAAGTTA-ATTTTTCTGCTACTGGAAATC--TTATAAAACAACCCATTCG----------------TTTTTCCCTAT--------GAAAGAAAGAACTTATCAGGCATTAATTACAT--AACATACTTCTAGTCA-AAATG----TCTTTACCttttcttt-----cttttttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16945070 325 - 229590362 TCAGGAAATATTAATTTCATCCTGATAGAGAGA----C-----TTTTTCCTTGAAATAAGGCACAGATAATTATATGAAGCTAATGGATGTTTAAAGATGTATGCTGGGATAAATAGCTTTAGGAAATGTATTGTACTATCCTTGGTAAGAACAAGACAAGTAAATATT-GCTTA------------------TGGTA--------------GATTTTAAGCTATTTTTTTCTGCTACTGGAAATC----ATAAAACAACCCATTCGTCTGTTTTGTTTTTTTTTTTTCCCTAT--------GAAAGAAAGAACTTATCAGGCATTAATTACATAAAATATACTTCTAGTCA-AAATG----TCTTTACCttttc---------tttattttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223707855 324 - 227556264 TCAGGAAATATTAATTTCATCCTGATAGAGAGA----C-----TTTTTCCTTGAAATAAGGCACAGATAATTATATGAAGCTAATGGATGTTTAAAGATGTATGCTGGGATAAATAGCTTTAGGAAATGTATTGTACTATCCTTGGTAAGAACAAGACAAGTAAATATT-GCTTA------------------TGGTA--------------GATTTTAAGCTATTTTTTTCTGCTACTGGAAATC----ATAAAACAACCCATTCGTCTGTTTT-TTTTTTTTTTCCCCCTAT--------GAAAGAAAGAACTTATCAGGCATTAATTACATAAAATATACTTCTAGTCA-AAATG----TCTTTACCttttc---------tttattttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16758417 325 - 220367699 TCAGGAAATATTAATTTCATCCTGCTAGAGAGA----C-----TTTTTCCTTGAAATAAGGCACAGATAATTATATGAAGCTAATGGATGTTTAAAGATGTATGCTGGGATAAATAGCTTTAGGAAATGTATTGTACTATCCTCGGTAAGAACAAGACAAGTAAATATT-GCTTA------------------TGGTA--------------GAttttaagctatttttttctgctaCTGGAAATC----ATAAAACAACCCATTcgtctgttgttgtttttttttttccctat--------gaaAGAAAGAACTTATCAGGcattaattacataaaatatacttcTAGTCA-AAATG----TCtttaccttttc---------tttattttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82556426 324 + 85787240 TCAGGAAATATTAATTTCATCCTGCTAGAGAGA----C-----TTTTTCCTTGAAATAAGGCACAGATAATTATATGAAGCTAATGGATGTTTAAAGATGTATGCTGGGATAAATAGCTTTAGGAAATGTATTGTACTATCCTTGGTAAGAACAAGACAAGTAAATATT-GCTTA------------------TGGTA--------------GATTTTAAGCTA-TTTTTTCTGCTACTAGAAATC----ATAAAACAACCCATTCATCTGTTTTTTATTTTTTTTTCTCCTAT--------GAAAGAAAGAACTTATCAGGCATTAATTACATAAAATATACTTCTAGTCA-AAATG----TCTTTACCttttc---------tttattttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14239404 362 - 49578535 TCAGTAAATATTAATTTCATCCTGCTACAGAGA----C-----TTTTTCCTTGAACTAAGGCACAGATGACTATATGAAACTGATGAATGTTTAAAGATGCATG-TGGGAGAAAGAACTTTGGGAAGTGTAGTGAGCTATTCTTGATAAGAACAAGATAAGTAAATATT-GCTTGCTTTTAAGTTAATTTTTCTGCTACTTGAAATCTTAAGATTTTTAAGTTA-ATTTTTTTGCCACTTAAAATC--TTGTAGAACAACCCATTCGTGTGTTTT--------TTTCTTCCTAT--------GAAAGAAAGAACTTATCAGGCATTAATTACATAAAATTTACTTCTAGTCA-AAATATCTTTCTTTCCCttttttttttttgtttttttttg i calJac3.chr19 C 0 C 0 s mm10.chr1 178816338 306 + 195471971 TCAGTAAATACTAATTTCATTCTGCTAGGGAGACAGTC-----TTTTTCCTTGATGTAA-GCACTGGGAAGTACAGGAAGTTAATGGGTAGTTAGAG--GTCTGCTGAGACGAATGGCTTCAGGAAATATGTCCTGCTGTCCTC-ATAGGAACAAGACAGGTAAATATG-GCCTT------------------T--TG--------------G------------GTTCATTTGCTACTTGAATTTTTTTAAAAAGCAACTCACCTG----------------TTTTCCCTTATAGGGTGAGGGGGGTAAGGTCCTGTGGGGCATGGATCTCACAAAACATGCCTCTAGCCAGAAATG----CC--AACCTTTTC--------AATTCTTTT- i mm10.chr1 C 0 C 0 s canFam3.chr7 36384836 316 + 80974532 TCAGTAAATATTAATTTCATCCCGTTAGAGAGA----CGGTCTTTTTATCTTGAAATGAAGTCCAGAGAAGTAAATAAAGCTCATGGATATTTAAAGATGTGTACTGGGATGAATAGCTTGAAATAACCTATAATACAATCCGTGGTAAGAATGAGACAAGTAAATATT-GCTTA------------------TAGTT--------------GTGTTTTAG----GGTTTTTTGTTGTTTGAAATC--TTCTAAGACAACCCACTCATTTGTT----------TTTCTCCCTGT--------G-AAGAAGGAACTTGTAAGTCATTAATTACACAAAATACATGTCTGGCCA-AAAAG----TCTTTACCTTTTC--------AATCCTTT-- i canFam3.chr7 C 0 I 46 a score=611549.000000 s hg38.chr1_KI270759v1_alt 229098 220 + 425601 ttttttgagatggagtgttgctctgtcacccaggctggagtgcagcagcacgatctcggctcactgcaacctctacctcccaggttcaagcgattctcccacctcagccacccgagtagctggcattacaggcatgtgccaccatgctcgactagtttttgga-t---tttagctgagatgggggtctcaccatgttggtcaggctggtct-cgatctcct-gacc s panTro4.chr1 224983677 220 + 228333871 ttttttgagatggagtgttgctctgtcacccaggctggagtgcagcagcacgatctcggctcactgcaacctctacctcccaggttcaagcgattctcccacctcagccacctgagtagctggcattacaggcatgtgccaccatgctcgactagtttttgga-t---tttagctgagatgggggtctcaccatgttggtcaggctggtct-cgaactcct-gacc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226350386 224 - 229942017 ttttttgagatggagtgttgctctgtcaccctgactggagtgcagcggcatgatctcggctcactgcaacctctgcctcccaggttcaagcgattctcccacctcagccacccaagtagctggcattacaggcatgtgccaccatgctcggctagtttttgga-ttcctttagttgagat-ggggtctcaccatgttggtcaggctggtctgcgaactcctggacc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140234586 219 - 143122389 ttttttgagatggagtgttgctctgttgtccaggctggagtgcagcggcacgatctcggctcactgcaacctctacctcccaggttcaagcgattctcccacctcagccacctgagtagctggcattacaggcatgtgccaccatgcttggctagtttttgga-t---tttagttgagat-ggggtctcaccatgttggccaggctggtct-cgaactcct-gacc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16945395 218 - 229590362 ctttttgagatggggcgttgctctgtca-ctaggctggagtgcagcagcacgatctcggctcactatgacctctgcct-ccaggttcaagcgattctcccacctcagccacccgagtagctggcattacaggcacccgccaccatccctggctaattttggtatt---tttagtggagat-gggattttaccatgttggccaggctggtct-cgatctcct-gacc i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223708179 218 - 227556264 ctttttgagatggggcgttgctctgtca-ctaggctggagtgcagcagcacgatctcggctcactatgacctctgcct-ccaggttcaagcgattctcccacctcagccacccgagtagctggcattacaggcatgtgccaccatgcctggctagtttttgga-t---tttagttgagatgggggtctcaccatgttggtcaggctggtct-caaactcct-gacc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16758742 218 - 220367699 ctttttgagatggggcgttgctctgtca-ctaggctggagtgcagcagcacgatctcggctcactatgacctttgcct-ccaggttcaagcgattctcccacctcagccacccgagtagctggcattacaggcatgtgccaccatgcctggctagtttttgga-t---tttagttgagatgggggtctcaccatgttggtcaggctggtct-caaactcct-gacc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82556750 217 + 85787240 ctttttgagatggggcgttgctctgtcg-ccaggccggagtgcagcagcacgatctcggctcactacgacccctgcct-ccaggttcaagcgattctcccacctcagccacccaagtagctggcatgacaggcatgtgccactatgcccagctagtttttgga-t---tttagttgagat-ggggtctcaccatgttggtcaggctggtct-cgaactcct-gacc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14239766 220 - 49578535 ttttttgagagagagcactgctcttttgcccaggctggagtgcaatggtgcgatctcagctcaccacaacctccacctcccaagttcaagcgagtctcccacctcagccacccgagcagctgggattacaggcatgtgccaccatgcctggctaatttttgtatt---tttagtagagat-ggagtctcaccatgttggctaggttggtct-tgaactcct-gacc i calJac3.chr19 C 0 C 0 e mm10.chr1 178816644 0 + 195471971 C e canFam3.chr7 36385152 46 + 80974532 I a score=7903.000000 s hg38.chr1_KI270759v1_alt 229318 4 + 425601 ttaa s panTro4.chr1 224983897 4 + 228333871 ttaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226350610 4 - 229942017 ttaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140234805 4 - 143122389 ttaa i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223708397 4 - 227556264 ttaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16758960 4 - 220367699 ttaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82556967 4 + 85787240 ttaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14239986 4 - 49578535 tcca i calJac3.chr19 C 0 C 0 e mm10.chr1 178816644 0 + 195471971 C e canFam3.chr7 36385152 46 + 80974532 I e rheMac3.chr1 16945613 1 - 229590362 I a score=292085.000000 s hg38.chr1_KI270759v1_alt 229322 130 + 425601 gtgatccacccacctcggcctcccaaagtg-ctgggattacaggcgtgagccactgcacctggccGTCTTTACCTTTTCAATTCTCTCATGACTGCCTCTCC-TTTATGTCCCTAAATAATACAATTATACG s panTro4.chr1 224983901 130 + 228333871 gtgatccacccacctcggcctcccaaagtg-ctgggattacaggcgtgagccactgcacctggccGTCTTTACCTTTTCAATTCTCTCATGACTGCCTCTCC-TTTATGTCCCTAAAGAATACAATTATACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226350614 131 - 229942017 gtgatccacccacctcggcctcccaaagtgactgggattacaggtgtgggctgctgcgcccggccATCTTTACCTTTTCAGTTCTTTCATGACTGCCTCTCC-TTTATGTCCCTGAATAATACATTTATACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140234809 130 - 143122389 gtgatccgcccacctcggcctcccaaagtg-ctgggattacaggcgtgagccgctgtgcccggccGTCTTTACCTTTTCAATTCTTTCGTGACTACCTCTCC-TTTATGTCCCTGAATAATACAATTATACA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223708401 130 - 227556264 gtggtctgcctacctcggcctcccagagtg-ctgggattacaggtgtgagtcacagcgcccggccATCTTTACCTTTTCAGTTCTTTCATGACTTCCTCTCC-TTTATGTCCCTGAATAATACAATTATACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16758964 130 - 220367699 gtgatctgcccacctcagcctcccagagtg-ctgggattacaggtgtgagtcacagtgcccggCCATCTTTACCTTTTCAGTTCTTTCATGACTTCCTCTCC-TTTATGTCCCTGAATAATACAATTATACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82556971 130 + 85787240 gtggtctgcccacctcggcctcccaaagtg-ctgggattacaggtgtgagtcacagcgcccggcTATCTTTACCTTTTCAGTTCTTTCATGACTTCCTCTCC-TTTATGTCCCTGAATAATACAATTATGCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14239990 130 - 49578535 gtcatctgcccacctcagcctcccaaagtg-ctgagattacaggcatgagccactgcgcccggccGTCTTTACATTTTCAATTCTTTCATGACTGCCCCTCC-TTTATGTCCCTGAATAATACAGTTATACA i calJac3.chr19 C 0 C 0 s mm10.chr1 178816644 44 + 195471971 ----------------------------------------------------------------------------------------GTGACCACCTCTCCTTTTGTGTCCCTGAACAATACCATCATACG i mm10.chr1 C 0 C 0 e canFam3.chr7 36385152 46 + 80974532 I e rheMac3.chr1 16945613 1 - 229590362 I a score=12690.000000 s hg38.chr1_KI270759v1_alt 229452 3 + 425601 TGA s panTro4.chr1 224984031 3 + 228333871 TGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226350745 3 - 229942017 TGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140234939 3 - 143122389 TGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16945614 3 - 229590362 TGA i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223708531 3 - 227556264 TGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16759094 3 - 220367699 TGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82557101 3 + 85787240 TGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14240120 3 - 49578535 TGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178816688 3 + 195471971 TGA i mm10.chr1 C 0 C 0 e canFam3.chr7 36385152 46 + 80974532 I a score=793048.000000 s hg38.chr1_KI270759v1_alt 229455 240 + 425601 ATGATTTCTCAACCTTAACCTTCTCTTCTC--TG-TGTCATTGAAGTGCTATATGAAAAGAACTGAAGCTGCTGACCTCTAAGACATTGGAATATATAAAA-A---AAGATCAAACAGCTGCTTATAATGATGTCAAAGATAAAAT-----GCTATTATAGAATCTATGGCTGTAAAAATGTGATTTA----------TATTAATTTTT-AGTA-TTCTGAAAATTTCC--TGATATA-TTTATTTTATA-CACACATTTTAAGAAAA--- s panTro4.chr1 224984034 240 + 228333871 ATGATTTCTCAACCTTAACCTTCTCTTCTC--TG-TGTCATTGAAGTGCTGTATGAAAAGAACTGAAGCTGCTGACCTCTAAGACATTGGAATATATAAAA-A---AAGATCAAATAGCTGCTTATAATGATGTCAAAGATAAAAT-----GCTATTATAGAATCTATGGCtataaaaatgtaattta----------tattaattttt-aGTA-TTCTGAAAATTTCC--TGATATA-TTTATTTTATA-CACACATTTTAAGAAAA--- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226350748 247 - 229942017 ATGATTTCTCAACCTTAACCTTCTCTTCTC--TG-TGTCATTGAAGTGCTGTATGAAAAGAACTGAAGCTGCTGACCTCTAAGAAATTGGAATATATAAAATA---AAGATCAAACAGTTGGTTATCATGATGTCAAAGATAAAAT-----GCTATTATAGAATCTATGGCTATAAAAATGTGATTTA----------TGTTAATTTTTAAGTATTTCTGAAAATTTTCCGTGATATATTTTATTTCATACCACACATTTTAAGAAAA--- i ponAbe2.chr1 C 0 I 13 s nomLeu3.chr5 140234942 240 - 143122389 ATGATTTCTCAACCTTAACCTTCTCTTCTC--TG-TGTCATTGAAGTGCTGTGTGAAAAGAACTGAAGCTACTGACCTCTAAGAAATTGGAATATATAAAATA---AAGATCAAACAGCTGGTTATCATGATGTCAAAGATAAAAT-----GCTATTATAGAATCTATGGCTATAAAAATGTGA-TTA----------TATTAATTTTT-AGTA-TTCTGAAAATTTCC--TGATATA-TTTATTTTATA-CACACATTTTAAGAAAA--- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16945617 246 - 229590362 ATGATTTCTCAACCTTAACCTTCTCTTCTC--TG-TGTCATTGAAGTGCTGTATGAAAAGAACAGAAGCTGCTGACCTCTAAGAAATTGGAATATATAAAATA---AAGATCAAACAGCTGGTTATAATGATGTCAAAGATAAAATAAAAAGCCATTATAGAATCTATGGCTATACAAATGTGATTTA----------TATTAATTTTT-AGTA-TTCTGAAAATTTCC--CGATATA-TTTATTTTATA-CACAAGTTTTAGGAAAA--- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223708534 246 - 227556264 ATTATTTCTCAACCTTAACCTTCTCTTCTC--TG-TGTCATTGAAGTGCTGTATGAAAAGAACAGAAGCTGCTGACCTCTAAGAAATTGGAATATATAAAATA---AAGATCAAACAGCTGCTTATAATGATGTCAAAGATAAAATAAAAAGCCATTATAGAATCTATGGCTATACAAATGTGATTTA----------TATTAATTTTT-AGTA-TTCTGAAAATTTCC--CGATATA-TTTATTTTATA-CACAAGTTTTAGGAAAA--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16759097 244 - 220367699 ATGATTTCTCAACCTTAACCTTCTCCTCTC--TG-TGTCATTGAAGTGCTGTATG--AAGAACAGAAGCTGCTGACCTCTAAGAAAttggaatatataaaata---aagatcaaaCAGCTGGTTATAATGAtgtcaaagataaaataaaaagccattaTAGAATCTATGGCTATACAAATgtgattta----------tattaattttt-agta-TTCTGAAAATTTCc--cgatata-tttattttata-cacaagttttaggaaaa--- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82557104 243 + 85787240 ATGATTTCTCAACCTTAACCTTCTCTTCTC--TG-TGTCATTGAAGTGCTGTATGAAAAGAACAGAAGCTGCTGACCTCTAAGAAATTGGAATATATAAAATA---AAGATCAAACAGCTGGTTATA---ATGTCAAAGATAAAATAAAAAGCTATTATAGAATCTATGGCTATAAAAATGTGATTTA----------TATTAATTTTT-AGTA-TTCTGAAAATTTCC--CAATATA-TTTATTTTATA-CACAAGTTTTAGGAAAA--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14240123 233 - 49578535 ATGATTTCTAAACCCTAACCTTCTCCTATCTGTG-TGTCATTGAAGTGCTGTATGAAAAGAACTGAAGCTGCTGACCTCTAAGATATTGTAATATATCAAATA---AAGATCAAACAGCCGGTTACAAGGATGTCGAAGTTAAAAC-----GCCATTAGAGAATCTATGGCCATAAAAACATGATTTA----------TATTCATTTTT-GGTC-ATCTGAAAATT-------------CTTATTTGATA-CACAAATTCTAAGAAAA--- i calJac3.chr19 C 0 C 0 s mm10.chr1 178816691 212 + 195471971 GCAATTTCTAAACTTTAACCTTCTCCTATCTGTG-TGTCATTGAGGCACTACATAAGAAGA------------------------ATTGGAGCATATAAG--A---CATGTCAGAGAGCTGCTCCTAATGATGTCAGGAGGAGAGT-----GCCTTTGTGGAGTC-------ACAGAAACTC---TTAAGCGACAGCCTGCTCATTTCA-AAT--TTCTGAAATTCTCC--TAATACG-----AGCTACA-TACCCATTTTAAGAAAA--- i mm10.chr1 C 0 I 6 s canFam3.chr7 36385198 245 + 80974532 ATGATTTC-------TAACCTTCTTCTCTC--TGCCTTCATTGAAGTGTTACATAATAAGAGCAGAACCTGCTGACTTCC-AGAAATTAGAACATATAAGACAGATGAGATCAAACAGCTGGCTATAATGATATTGAAATTAAAATAAAATGTTCTCATAGAATATAAGGTTATAAAAATACTGTTTT----------TATTAATTTTT-CAAA-TTCTGAAATTCTGT--TAGTATA-TTTATTTCATA-TACATGTTTTTAAAAGAAAG i canFam3.chr7 I 46 C 0 a score=26591.000000 s hg38.chr1_KI270759v1_alt 229695 10 + 425601 TAATTTTATA-- s panTro4.chr1 224984274 10 + 228333871 TAATTTTATA-- i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140235182 10 - 143122389 TAATTTTATA-- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16945863 10 - 229590362 TAATTTTATA-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223708780 10 - 227556264 TAATTTTATA-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16759341 10 - 220367699 taattttata-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82557347 10 + 85787240 TAATTTTATA-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14240356 10 - 49578535 TAATTGTATA-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178816909 10 + 195471971 CAATTTAAAA-- i mm10.chr1 I 6 C 0 s canFam3.chr7 36385443 12 + 80974532 TAATTTTTAAAA i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226350995 13 - 229942017 I a score=2162703.000000 s hg38.chr1_KI270759v1_alt 229705 685 + 425601 TGCATTCTCAAGATGACTTCCTCT-----ATCACTGTTTTTCTGCATTGAAGCCAACGGAGGCTTT-CCTAAATG--GAGTAGAG----TCCAGGAGTCATTGCAGAATCTCT------------ATACTGGAAATCATTCTGGTTCCccactgcacgcatccctctccctcgtattcctggtaagcagttttctacccaccatttggatattttcagtgacaaaacacactcac-tattttatgaagccaacacatcactagtgggttattccaattttgagagaaatgtcgcttatacttatcaagctaaagatgc-ttttatgtttcacctg-ct-----gctttggta-cctgtattacataggtttaacccctattcAGATACAATACGGTACAATACAGGACAC----------------------------------------------------------------------------------------ATAGGCCTAGATTCAGCCTTGGCTCTACTACTTATT-ATTTA-TTATATTCTTTCAAAGGA--TCATTGATTA---------Gtgtactaaatg-ctttacatgtactgtcattaaattctcat-aaaaagtc-taaaaaagtaggtattatttttgcttc----atcttcctatgtgg-aaactgaggcT-----------TGATAATAATATTTATAATAGTGATGAT-----GATGatgatagcattgtcatgtgccaactgtgttccaggcactgtgcttgggcc-tttataaacatt-------atcagaatttaggtaacttccctaag--attatctacctagcatct s panTro4.chr1 224984284 685 + 228333871 TGCATTCTCAAGATGACTTCCTCT-----ATCACTGTTTTTCTGCATTGAAGCCAACGGAGGCTTT-CCTAAATG--GAGTAGAG----TCCAGGAGTCATTGCAGAATCTCT------------ATACTGGAAATCATTCTGGTTCCccactgcacgcatccctctccctcgtattcctggtaagcagttttctacccaccatttggatattttcagtgacaaaaaacactcac-tattttatgaagccaacacatcactagtgggttactccaattttgagagaaatgtctcttatactTATCAAGCTAAAGATGC-TTTTACATTTCACCTG-CT-----GCTTTGGTA-CCTGTATTACATAGGTTTAACCCCTATTCAGATACAATACGGTACAATACAGGACAC----------------------------------------------------------------------------------------ATagacctagattcagccttggctctactacttatt-aTTTA-TTATATTCTTTCAAAGGG--TCATTGATTA---------Gtgtactaaatg-ctttacatgtactgtcattaaattctcat-aaaaagtc-taaaaaagtaggtattatttttgcttc----atcttcctatgtgg-aaactgaggct-----------TGATAATAATATTTATAACAGTGATGAT-----GATGATGATAGCATTGTCATATGCCAactgtgtgccaggcactgtgcttgggcc-tttataaacatt-------atcAGAATTTAGGTAACTTCCCTAAG--ATTATCTACCTAGCATCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226351008 690 - 229942017 TGCATTCTCAAGATGACTTCCTCT-----ATCACTGTTTTTCTGCGTTGAAGCCGATGGAGGCTTTCCCTAAATG--GAGTAGAG----TCTAGGAGTCTGACTGGAATCTCT------------ATACTGGAAATCATTGTGGTTCCccactgcacgcatccctctccctcgtattcccggtaagcggttttctacccaccatttggatattttcagtgacaaaaaacactcac-tattttatgaagccaacacatcactagtgggttactccaattttgggaaaaatgtctcttatgcttatcaagctaaagatgc-ttttacgtttcaccta-ct-----gCTTTGGTA-CCTGTATTACATAGGTTTAACCCCTATTCAGATATAATACAGTACAATACGGGACAC----------------------------------------------------------------------------------------GTAGACCTAGATTCAGCCTCGGCTCTACTACTTATTCATTTACTTATATTCTTTCAAGAGGCATCATTGATTA---------Gtgtactaaatgcctttacatgtactgtcattaaattctcat-aaaaagtcttaaaaaagtagg---tatttttgcttc----atcttactatgtggaaaactgaggct-----------TGATAATAATATTTATAATAGTCATGAT-----GATGATGATAGCATTGTCATgtgccaactgtgtgccaggcactgtgcttgggcc-tttataaacatt-------atcAGAATTTACGTAACTTGCCTAAG--ATTATCTACCTAGCATCT i ponAbe2.chr1 I 13 C 0 s nomLeu3.chr5 140235192 682 - 143122389 TGCATTCTCAAGATGACTTCCTCT-----ATCGCTGTTTTTCTGCACTGAAGCCAACAGAGGCTTT-CCTAAATG--GAGTAGGG----TCCAGGAGTCATTGCAGAATCTCT------------GTACTGGAAATGGTGGTGGTTCCccactgcacgcatccctctccctcgtattcctggtaagcggttttctacccaccatttggatattttcagtgacaaaaaacactcac-tattttatgaagccaacacatcactagtgggttactccaattttgggaaaaatgtctc--atacttatcaagctaaagatgc-ttttgcatttcaccta-ct-----gCTTTGGTA-CCTGTATTACATAGGTTTAACTCCTATTCAGATATAATACAGTACAATACAGGACAC----------------------------------------------------------------------------------------ATagacctagattcagcctcggctctgctacttatt-attta-tTATATTCGTTCAAAGGA--TCATTGATTA---------Gtgtactaaatg-ttttacatgtactgtcattaaattctcat-aaaaagtc-taaaacagtaggtattatttttgcttc----atcttactatgtgg-aaactgaggcT-----------TGATAATTATATTTATAATAGTCATGAT-----GATGataatggcattgtcatgtgccaatcatatgccaggcactatgcttaggcc-tttataaacatt-------atcAGAATTTAGGTAACTTGCCTAAG--ATTATCTA-CTAGCATCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16945873 771 - 229590362 TGTATTCTCAAGATGACTTCTTCT-----ATCACTGTTTTTCTGCATTGAAGCCAACAGAGGCTTT-GCTAAATG--GAGTAGAG----TCCAGGAGTCATTGCAGAATCTCT------------ATACTGGAAACCATTCAGGTTCCccactgcacgcatccctctccctcatattcccggtaagtggttttctacccaccatttggatattttctgtgacaaaaaacactcac-tattttatgaagccgacacatcactagtgggttactccaatttttggaaaaatgtctctta-acttatcaagctaaagatgc-ttttacgtttcaccta-ct-----gctttggta-actgtattatatagatttaacccctattcAGATATAGTACAGTACAATACAGGACACAGACCAGATTCAGCCTTGGCTCTACTACTTCTGATTGATTATATTCTTTCAAAGGATCATTGATTAGATACAGTACAATACAGGACACATAGACC-AGATTCAGCCTCGGCTCTACTACTTCTT-AGTGA-TTATATTCTTTCAAAGGA--TCATTGATTA---------Gtgtactaaacg-ctttacatgtactgtcattaagttgtcat-aaaaactc-taaaaatgtaggtattatttttgcttc----atcttactacacag-aaactgaggct-----------TGATAATCATATTTATAATAGTCGTGAT-----GATGGTGATAGCATTGTCATGTGACAacaatgtgccaggcactgtgcttaggcc-tttataaacatt-------atcagaatttaggtaacttgcctaag--attatctacctagcacct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223708790 681 - 227556264 TGTATTCTCAAGATGACTTCTTCT-----ATCACTGTTTTTCTGCATTGAAGCCAACAGAGGCTTT-GCTAAATG--GAGTAGAG----TCCAGGAGTCATTGCAGAATCTCT------------ATACTGGAAACCATTCAGGTTCCccactgcacgcatccctctccctcatattcccggtaagtggttttctacccaccatttggatattttctgtgacaaaaaacactcac-tattttatgaagccgacgcatcactagtgggttactccaatttttggaaaaatgtctctta-acttatcaagctaaaGATGC-TTTTACGTTTCACCTA-CT-----GCTTTGGTA-CCTGTATTATATAGATTTAACCCCTATTCAGATATAATACAGTACAATACAGGACAC------------------------------------------------------------------------------------------AGACC-AGATTCAGCCTTGGCTCTACTACTTCTG-ATTGA-TTATATTCTTTCAAAGGA--TCATTGATTA---------Gtgtactaaacg-ctttacatgtactgtcattaaattgtcat-aaaaactc-taaaaatgtaggtattatttttgcttc----atcttactatgcag-aaactgaggct-----------TGATAATCATATTTATAATAGTCATGAT-----GATGGTGATAGCATTGTCATGTGACAACAAtgtgccaggcactgtgcttaggcc-tttataaacatt-------atcAGAATTTAGGTAACTTGCCTAAG--ATTATCTACCTAGCACCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16759351 683 - 220367699 tgtattctcAAGATGACTTCTTCT-----ATCACTGTTTTTCTGCATTGAAGCCAACAGAGGCTTT-GCTAAATG--GAGTAGAG----TCCAGGAGTCATTGCAGAATCTCT------------ATACCAGAAACCATTCAGGTTCCCCACTGCACGCATCCCTCTCCCTCATATTCCCGGTAAGTGGTTTTCTACCCACCATTTGGATATTTTCTGTGACAAAAAACACTCAC-TATTTTATGAAGCCGACGCATCACTAGTGGGTTACTccaatttttggaaaaatgtctcTTA-ACTTATCAAGCTAAAGATGC-TTTTACGTTTCACCTA-CT-----GCTTTGGTA-CCTGTATTATATAGATTTAACCCCTATTCAGATATAATACAGTACAATACAGGACAC----------------------------------------------------------------------------------------ATAGACC-AGATTCAGCCTCGGCTCTACTACTTCTT-ATTGA-TTATATTCTTTCAAAGGA--TCATTGATTA---------GTGTACTAAACG-CTTTACATGTACTGTCATTAAATTCtcat-aaaaactc-taaaaatgtAGGTATTATTTTTGCTTC----ATCTTACTAcgcag-aaactgaggct-----------tgatAATCATATTTATAATAGTCGTGAT-----GATGGTGATAGCATTGTCATGTGAcaacaatgtgccaggcactgtgcttaggCC-TTTATAAACATT-------ATCAGAATTTAGGTAACTTGCCTAAG--ATTATCTACCTAGCACCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82557357 683 + 85787240 TGTATTCTCAAGATGACTTCTTCT-----ATCACTGTTTTTCTGCATTGAAGCCAACAGAGGCTTT-GCTAAATG--GAGTAGAG----TCCAGGAGTCATTGCAGAATCTCT------------ATACTGGAAATCACTCAGGTTCCccactgcacgcatccctctccctcatattcccggtaagtggttttctacccaccactcggatattttcagtgacaaaaaacactcac-tattttatgaagccgatgcatcactagtgggttactccaatttttggaacaatgtctctta-acttatcaagctaaagatgc-ttttacatttcaccta-ct-----gCTTTGGTA-CCTGTATTATATAGATTTAACCCCTATTCAGATATAATACAGTACAATACAGGACAC----------------------------------------------------------------------------------------ATAGACC-AGATTCAGCCTCGGCTCTACTACTTATT-AGTGA-TTATATTCTTTCCAAGGA--TCATTGATTA---------Gtgtactaaacg-ctttacatgtactgtcattaaattctcat-aaaaagtc-taaaaatgtaggtattatttttgcttc----atcttactatgcag-aaactgaggcT-----------TGATAATAATATTTATAATAGTCGTGAT-----GATGGTGATAGCATTGTCATGTGACAacaatgtgccaggcactgtgcttaggcc-tttataaacatt-------atcagaatttaggtaacttgcctaag--attatctacctagcacct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14240366 684 - 49578535 TGTGTTCTCAAGATGATTTCGTCT-----ATTACTGTTTTTCTGCCCTGAAGCCAACAGAGGCATT-CCTAAATG--GAGTAGGG--ATGCCAGGAGTCACTGCAGAATTTCT------------GTACTGGAAATCATTCAGGGTTCACACTGCCTGCATtcctctccctgatattcccagtaaacgggattccacccaccatttggatactttcagtgacaaaaa--actcat-tattttatgaaaccaactcttcactagtgggttactccaatttttggaaaaatgtctcttatacttatcaagctaaaaaggc-ctttaca-ttcaccta-ct-----gctcTGCCA--CTGTGTTATGCGGATTTAGCCCCTATTCAGATATATGGCAGTAAAATACGGG-CAC----------------------------------------------------------------------------------------ATAGACCTAGATTCTGACTCAGCTCCACTGCTCATT-ATTTC-TTGTGTTCTTTTGAAGGA--TCGCTGATTA---------Gtgtaccaaatg-ctctaaatgtgctgtcattaaattctcgt--gaaagtc-taaaaacgtaggtattacttttgcttt----ctcttactctgcgg-aaactgaggcT-----------TGATGATAATATTTACAATGGTCATGAT-----GATGACGGGAACACTGTCATGTACCAGctgtgtgccaggcactgtgcccagcccttttataaacatt-------atcAGAATTTAGGTAACATGCCTAAATTATTATCTGCCTGCTATCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178816919 664 + 195471971 TGTATTCTCAAAATAATCAGCTCTAATTGAATACAATTTTCTGGAGTGGTCGCCAAC-GAGGCTTT-CCTAAGTGTCTGGGAGAT----TGTAGGAGTCTTTCCG---TCTGC------------GTGCTGTGAGACAGGCTGCCTCTCTACTGCATG--GCTCTCTTACTGATATTCCTTTAAAGTGATTTT-TACCCACCACTCAGACACTTTCAGGGACAAAAT--ACTCTA-TGTTTTATGAAGGTCATTTATCAAGAATGTGCT-TTCTAATTTTCAGAAGAAT-CCCCTTCTAATTATAAAGCCAGTG-TGC--TTTATGTCTCAGCTA-GTATTTAGCTCTGGTAGATTTCGCTACCTAAATCTAGCCCCTACTGAAAGGT----------AATGTGAGGCTC----------------------------------------------------------------------------------------CTTCATCTAGAGTCAGGCTTAGCTCCAGCACTTACT-ATATA-----GCTCACTGAAGTGA---CACTCATTG---------GTCCACCAAACT-CTTTGTA-ACGCTTTTATTTAGTTTCCTA-AAAGAGCC-TATAAAAGCAGATAGTATTTTTTTTTCCTGAATATTACTGTGGAA-AAACCAAGTCTTGGAAACAAagtgatgatgataatt-taataacaataataaataaataataataatactg-------------atGTTCCAGGCACTACG--TGAGCA-TGTA---------------GTCAGAATGTAGGCAA-ATGTCCACT--GTTACCTACTTAGTATCT i mm10.chr1 C 0 I 3110 s canFam3.chr7 36385455 666 + 80974532 TGTATTCTCAAAATAATCACCTCC-----ATTACTATTTTTCTGCATTGAAGCTAACAGAGGCTTC-CCCAGATG--GAATTTAGTGATTCTAGGAAGTACTTcagaaactctgccttagaagagattttggaaatcatctgattctcctaacatatgcattcttcatcctgatgtttcctggaattggttttctagctcctacttgggcatttccagcgacaaaaa--actcacttatttcaggaagcagacccatgattaatgggttactcttattttcagacagatacc-cttatactta----------gATGTGTCTTTTGTCTCGCTTACCT-----GCTTTGCTA-----------------------CCTATTTAGAGACAGTGCTGTACGCTATGGGGCAG----------------------------------------------------------------------------------------GTGGACCTAGATGCGGTCTCAGCTTCACTACCTATA-A---A-------TCCTACAAGGTG--CCATCTATTAAGACTTCCTATGTAATGAACC-CTTAAAGTATAGTCTTACTTCATTTTCATAAAAAAATC-TACAAAGATCAGTAATCTTTTTGCTGG----ATCTTACTACGCAG-AAACTGAGG-T-----------TAATAATCATATTTATGACAGTGACGAT-----GATCAT------ATTCTTGAGTTCCATTGACATGCCAGGTGCTCTG-TAGACCC-TTCATATACATTTTAAACAATCAGGATTAAAGTGACTTGCCC-----ATTATTTACTCAGGGTCT i canFam3.chr7 C 0 I 1 a score=505200.000000 s hg38.chr1_KI270759v1_alt 230390 170 + 425601 aggaagctggatgttcaaact-aagtcag------aaaggcctcaggatttaactgccttgagcttcacttgttt-gtctgttaaat-gggggtaa-----tattgttctcctcacgagggcttctgagattc---aaaaaaatggcttatgaaagtatctggcaTCCTTGCTTGAAAGATA----cttcc s panTro4.chr1 224984969 169 + 228333871 AGGAAGCTGGATGTTCAAACT-AAGTCAG------AAAAGCCTCAGGatttaactgccttgagcttcacttgttt-gtctgttaaat--ggggtaa-----tattgttctcctcacgagggcttctgagattc---aaaaaaatggcttatgaaagtatctggcaTCCTTGCTTGAAAGTTA----cttcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226351698 160 - 229942017 AGGAAGCTGGATGTTCAAACT-AGGTCAG------AAAGGCCTCAGGatttaactgccttgagcttcgctcgttcggtctgttaaatggggaataa-----tactgttctcctcacgagggcttctgagattc---aaaA------------AAAGTATCTGGCATCCTTGCTTGAAAGATA----CTTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140235874 170 - 143122389 AGGCAGCTGGATGTTCAAACT-AGGTCAG------AAAGGCCTCAGGatttaactgccttgagcttcatttgttt-gtctgttaaat-gggggtaa-----tattgttctcctcaccagggcttctgagattc---aaaaaaatggcttatgaaagtatctggcaTCCTTGCTTGAAAGATA----cttcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16946644 173 - 229590362 aggaagctggatgttcaaact-aggtcag------aagggcctcaggatttaactgccttgagcttcatttgttt-gtctgttaaat--ggggtaa-----tattgttctgctcacaagggcttttgagattc---aaaaaaatggcttatgaaagTATCTGGCATCCTTGCTTGAAAGATACTTCcttcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223709471 173 - 227556264 AGGAAGCTGGATGTTCAAACT-AGGTCAG------AAGGGCCTCAGGatttaactgccttgagcttcatttgttt-gtctgttaaat--ggggtaa-----tattgttctgctcacaagggcttttgagattc---aaaaaaatggcttatgaaagtatctggcaTCCTTGCTTGAAAGATACTTCCTTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16760034 174 - 220367699 AGGAAGCTGGATGTTCAAACT-AGGTCAG------AAGGGCCTCAGGATTTAACTGCCTTGAGcttcatttgttt-gtctgttaaAT-GGGGGTAA-----TATTGTTCTGCTCACAAGGGCTTTTGAGATTC---aaaaaaaTGGCTTATGAAAGTATCTGGCATCCTTGCTTGAAAGATACTTCCTTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82558040 174 + 85787240 aggaagctggatattcaaact-aggtcag------aagggcctcaggatttaactgccttgagcttcatttgttt-gtctgttaaat-ggggataa-----tgttgttctgctcacaagggcttttgaggtta---aaaaaaatggcttatgaaagtatctggcaTCCTTGCTTGAAAGATACTTCcttcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14241050 163 - 49578535 AGGAAGCCCGGTATTCACATG-AGGTCAG------AAAAGACTCGGGA-TTAACT-CCCTCAGCTTCCTTTGTGT-GTCTGTTAAGT-GGGGATAC-----CATTG---TCCTCACAAAGGCTTCTGAGATTC---ACAA-AATGGCTTATGAAAGTATCTAGTATCCTTGCTC-AAAAATA----CTTCC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36386122 181 + 80974532 AAGAAGCTGGACATTGATATTCAGGTCAGATGCTAAAAGGACTCTGGATTTAACT-CTTTAAAGTCC---TGTTT-CTTTGAGAAAT-GGGATTAGATTACTATTGTCTTCCTCAGCAGGTTTTCTGAGATTCAGTAATAACATAGCCCATGAAATTATCTGACATTCTTGCTTAAAAAATA----CTTCC i canFam3.chr7 I 1 I 3530 e mm10.chr1 178817583 3110 + 195471971 I a score=2557590.000000 s hg38.chr1_KI270759v1_alt 230560 893 + 425601 acatgtcatttattcatttctttaaagagag-------ctttcttgaaagactctttccttcctct-ttctccagg-tttcttttctccaggctaaatatccccagctcctgtagtcttcgttcatTCATTcaaaacatac-cgtgagctctcttccctggtaaaatttacattctagaggggaaacagacagtaaagcaataaacatggtaaccaagtaaagcatctgctatgttacaagataataggtgtcatggttgtgaacaaccaagataatggaaattaggagtctgggagtgagTGGtgtt--------------------------------------------ttattgactgtggctgtgtgacaaa-ttacccccaa-aacttagtggctaaaagcagcaatgatcatttatcatctctcgaggtttctgggggtctaaaattcagataagacttagtgggtgtgatttatctctgttccatgatgtctgggacctcaggcagaagacttgaaggatggcatctggaatcctctaaaggctcattccttcatatgtctggcagttgatactggctgtcttctggggtcctcagttcttttccacttgaccctctccatgtgacctgggcttcctcacagcatggaagctgcgttcccacggtgagtgtctcaagaaaggaagccagggagaggccattattgccttttgtatccaaagctcagaagctctacagcatcacttccattacattctgttggccagggcaatttcagagttttgcttgggttcaagaaggaacatagacgcccacctctcaaggggagagtatcagtgtcaggttgtaagaagtgcctgtgg-gagacacatggatgcagccatctttggaaag---gactgtctgccaTgatgggcaaggtaggttc-acggata-aggtaacatt s panTro4.chr1 224985138 892 + 228333871 acatgtcatttattcatttctttaaagagag-------ctttcttgaaagactctttccttcctct-ttctgcagg-tttcttttctccaggctaaatatccccagctcctgtagtcttcgttcatTCATTcaaaacatac-catgagctctcttccctgctaaaatttacattctagaggggaaacagatagt-aagcaataaacgtggtaactaagtaaagcatctgctatgttacaagataataggtgtcatggttgtgaacaaccaagataatggaaattaggagtctgggagtgagTGGtgtt--------------------------------------------ttatttcctgtggctgtgtgacaaa-ttacccccaa-aacttagtggctaaaagcagcaatgatcatttatcatctctcgaggtttctgggggtctaaaattcagataagacttagtgggtgtgatttatctctgttccatgatgtctgggacctcaggcagaagacttgaaggatggcatctggaatcctctgaaggctcattccttcatatgtctggcagttgatactggctgtcttctggggtcctcagttcttttccacatgaccctctccatgtgacctgggcttcctcacagcatggaagctgcattcccagggtgagtgtctcaagaaaggaagccagggagaggccattattgccttttgtatccaaagctcagaagctctacagcatcacttccattacattctgttggccagggcaatttcagagttttgcttgggttcaagaaggaacatagacgcccacctctcaaggggagagtatcagtgtcaggttgtaagaagtgcctgtgg-gagacacatggatgcagccatctttggaaag---gactgtctcccaTgatgggcaaggtaggttc-acggata-aggtaacatt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226351858 902 - 229942017 ACATGTCATTTATTCATTTCTTTAAAGAGAG-------CTTTCTTGAAAGACTCTTTCCTTCCTCtcttctccaggatttcttttttccaagctaaatatccccagctcctgtagtctttgttcatTCACTCAAAACATAC-TGTGAGCtctcttccctgctaaaatttacattctagaaaggaaacagatagt-aagcaataaacatggtaactaagtaaagcatctgctatgttacaagataataggtgtcatggttgtgaacaaccaagataatggaaattaggagtctgggagtgagTGGtgtt--------------------------------------------ttatttactgtggctgtgtgacaaatttacccccaacaacttagtggctaaaagcaacaatgatcatttatcatctctcgaggtttctgggggtctaaaattcagataagacttagtggctgtggtttaactctgttccatgatgtctgggacttcaagcagaagacttgaaggatggcatctggaatcctctaaaggctcattccttcatatgtctggcagttgatactggctgtcttctgtggtcctcagttcttttccacatgaccctctccatgtgacctgggcttcctcacagcatggaagctgcgttcccaggttgagtgtctcaagaaagggagccagggagaggccattattgccttttgtatccaaagctcagaagctctacagcatcacttccattacattctgttggccagggcaatttccgagttttgcttgggttcaagaaggaacatagacccccatctctcaaggggagagtatcagtctcaggttgtaagaagtgcatgtggcgagacacatggatgcagctgtctttggaaagatagactgtctgccaTCAtgggcaaggtagattcaatggatagaggtaacatt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140236044 892 - 143122389 acatgtcatttattcatttctttaaagagag-------ctttcttcaaagactctttccttcctct-ttctccagg-tttcttttctccaggccaaatatccccagctcctgtagtcttcgttcatTCATTcaaaacatac-catgggctctcttccctgctaaaatttacattctagaggggaaacagatcgt-aagcaataaacatggtaactaagtaaagcatctgctatgttacaagataacaggtgtcatggttgtgaacaaccaagatgatggaaattaggagtctgggagtgagTGGtgtt--------------------------------------------ttatttactgtggctatgtgacaaa-ttacccccaa-aacttagtggctaaaagcaacaatgatcatttatcatctctcgaggtttctggaggtctaaaattcagataagacttagtgggtgtgatttgtctctgttccatgatttctgggacctcaggcagaagacttgaaggatggcatctggaatcctctaaaggctcattccttcatatgtctggcagttgatactggctgtcttctgtgttcctcagttgttttccacatgaccctctccatgtgacctgggcttcctcacagcatgagagctgcgttcccagggtgagtgtctcaagaaagggagccagggagaggccattactgccttttgtatctgaagctcagacgctctacagcatcacttccgttacattatgttggccagggcaatttcagagttttgcttgggttcaagaaggaacatagacccccacctctcaaggggagagtatcaatgtcaggttgtaagaagtgcatgtgg-gagacacgtggatgcagccatctttggaaag---tactgtctgccaTgatgggcaaggtaggttc-atagata-aggtaacatt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16946817 917 - 229590362 acatgtcatttattcatttcattaaagacag--------ttttttgaaagac----tccttcctct-ttctccagg-tttcttttctccgggctaaatatccccagctcctctcgtcttcgttcatTCATTcaaaacatac-cgtgagctctcttccctgctaaaatttacattctagagggaaaacagatagt-aagcaatacacatggtaacgaagtaaagcatctgctatgttacaagataataggtgtcatggttgtgaacaacaaagataaaggaaattaggagtctgggagtgagTGgtttttgtttttgtttttgttt----tttgtttgtttgtttgt------ttttTTActgtggctgtgtgacaaa-ttatccccaa-aacttagtggctaaaagcaacaaagatcatttatcatctctcgtagttgctggggatctaaaattcagataagatttagtggctgtgatttatctctgtcccatgacgtccgggacctcaggcagaagacttgaaggatggcatctggaataatctaaaggctcattctttcgtatgtctggcagttga---ggaccatcttctgtggtcctcggttcttttccacatgaccctctgcatgtgacctgggcttcctcacagcatgggaactgcgttcccagggtgagtgtctcaagaaagagatccggggagaggccattattgccttttgtgtctgaagctcagaagctctacagcatcacttccatgacattctg-tggccagggcagtttcagagtttttcttgggttcaagaaggaacatagacccctacctgtcaaggggagagtatcagtgtcaggttgtaagaagtgcatgtgg-gagacacatggatgcagccatctttggaaag---tactgtctgccaTgatgggcaaggtaggttc-atggata-aggtaacatt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223709644 924 - 227556264 ACATGTCATTTATTCATTTCATTACAGACAG--------TTTTTTGAAAGACTCTGTCCTTCCTCT-ttctccagg-tttcttttctccgggctaaatatccccagctcctCT-GTCTTCGTTCATTCATTCAAAACATAC-CGTGAGCtctcttccctgctaaaatttacattctagagggaaaacagatagt-aagcaatacacatggtaacgaagtaaagcatctgctgtgttacaagataataggtgtcatggttgtgaacaacaaagataaaggaaattaggagtctgggagtgagTGGTTtttgtttttgtttttgttttttgtttgtttgtttgtttgt------ttttttactgtggctgtgtgacaaa-ttatccccaa-aacttagtggctaaaagcaacaaagatcatttatcatctctcgtggttgctggggatctaaaattcagataagatttagtggctgtgatttatctctgtcccatgacgtccgggacctcaggcagaagacttgaaggatggcatctggaataatctaaaggctcattctttcgtatgtctggcaattga---ggaccatcttctgtggtcctcggttcttttccacatgaccctctgcatgtgacctgggcttcctcacagcatgggaactgcgttcccagggtgagtgtctcaagaaagagatccggggagaggccattattgccttttgtgtctgaagctcagaagctctacagcatcacttccatgacattctg-tggccagggcagtttcagagtttttcttgggttcaagaaggaacatagacccctacctgtcaaggggagagtatcagtgtcaggttgtaagaagtgcatgtgg-gagacacatggatgcagccatctttggaaag---tactgtctgccaTgatgggcaaggtaggttc-atggata-aggtaacatt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16760208 908 - 220367699 ACATGTCATTTATTCACTTCTTTAAAGACAG--------TTTTTTGAAAgactctttccttcctct-ttctccagg-TTTCTTTTCTCCGGGCTAAATATCCCCAGCTCCTCTCGtcttcgttcattcattcaaaacatAC-CGTGAGCTCTCTTCCCTGCTAAAATTTACATTCTAGAGGGAAAACAGATAGT-AAGCAATACACATGGTAACGAAGTAAAGCATCTGCTGTGTTACAAGATAATAGGTGTCATGGTTGTGAACAACCAAGATAAAGGAAATTAGGAGTCTGGGAGtgagtggtttttgtt-----------------tttgtttgtttgtttgt------ttgtttactgtggCTGCGTGACAAA-TTatccccaa-aacttagtggctaaaAGCAACAAAGATCATTTATCATCTCTCGTGGTTGCTGGGGATCTAAACTTCAGATAAGATTTAGTGGCTGTGATTTATCTCTGTCCCATGACGTCTGGGACCTCAGGCAGAAGACTTGAAGGATGGCATCTGGAATAATCTAAAGGCTCATTCTTTCGTATGTCTGGCAGTTGA---GGACCATCTTCTGTGGTCCTCGGTTCTTCTCCACATGACCCTCTGCATGTgacctgggcttcctcacagcatgggaACTGCGTTCCCAGGGTGAGTGTCTCAAGAAAGAGATCCGGGGAGAGGCCATTATTGCCTTTTGTGTCTGAAGCTCAGAAGCTCTACAGCATCACTTCCATGACATTCTG-TGGCCAGGGCAGTTTCAGAGTTTTTCTTGGGTTCAAGAAGGAACATAGACCCCTACCTGTCAAGGGGAGAGTATCAGTGTCAGGTTGTAAGAAGTGCATGTGG-GAGACACATGGATGCAGCCCTCTTTGGAAAG---TTCTGTCTGCCGTGATGGGCAAGGTAGGTTC-ATGGATA-AGGTAACATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82558214 927 + 85787240 acatgtcatttattcatttctttaaaggcag-------tttttttgaaagactctttccttcctct-ttgtccagg-tttcttttctccaggctaagtatccccagctcctctcgtcttcgttcatTCATTcaaaacatac-cgtgagctctcttccctgctaaaatttacattctagagggaaaacagatagt-aagcaatacacatggta---aagtaaagtgtctgctatgttacaagataataggtggcatggttgtgaacaaccaagataaaggaaattaggagtctgggagtgagtgtttttttgtttttttgtgggttttt-tttgtttgttt-tttgttttttgttttttActgtggctgtgtgacaaa-ttatccccaa-aacttagtgcctaaaagcaacaatgatcatttatcatctctcgtggttgctggggatctaaaattcagataagatttagtggctgtgatttatctctgtcccatgacgtctgggacctcaggcagaagacttgaaggatggcatctggaataatctaaaggctcattctttcgtatgtctggcagttga---ggaccatcttctgtggtcctcagttcttttccacatgaccctctccatgtgacctgggcttcctcacagcatgggaactgcgttcccagggtgagtgtctcaagaaagagatccggggagaggccattattgccttttgtgtctgaagctcagaagctctacagcatcacttccgtgacattctg-tggccagggcagtttcagagtttttcttgggttcaagaaggaacatagatccccacctgtcaaggggagagtatcagtgtcaggttgtaagaagtgcatgtgg-gagacacacggatgcagccatctttggaaag---tactgtctgccaTgatgggcaaggtaggttc-atggata-aggtaacatt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14241213 896 - 49578535 ATATGTCATTTATTCATTTCGTTAAAGACAGTTTTGTTTTTTTTTTAAAGACTCTTTCCTTCCtct-tcctccagg-tttctattctctaggctaaatattcccagttcctttagttttCATTTGTTCATTCAAAACATACTTATGAGCTCTCTTCCCTGCTAACATTCACATTCCAGAGGAGAAGCAGATAGT-AAGCCATACACATGGTAACTAAGCAAAGCCTCTGCTCTGTCACAAAATACTAAGTGTCATGGTTGTGGACAACCAGGATAATGGAAATTAGGACTCTGGGAATGAGTGGtgtt--------------------------------------------ttatttaccgtggctgtgtgacacg-ttacccccaa-aacttagtggcaaaaagcagcactgatcatttatcatctcttatggtttctgggagtctaaaattcagataagacttagtgggtgtgacttatctctgctccatgatgcctgggacctcaggcagaagacttgaaggatggcatctagaatcacctaaaggctcatttcttcgtatgtctagcacttgatactggcaatctcgtgggttcctcagctcttttccacacgaccctctccatgtgacctgggcttc----cagcatggaagctgcattcccagagtgagtgtcccaagaaagagagccagggagaggccatcactgccttttgtatcctaagctcagacattttatggcatcacttccgtcacattctgtcggccagggcagtctcaaaattttgcttgggttcgaaaaggaacctaggcccccacctctcaagggaagagcatcaatgtcaggttgtaagaagtccatgtgg-gagacacattgatgctgccatctttggaaag---tactgtctgccaTgatgggcaaggtaggttc-gttgata-aggtaacatt i calJac3.chr19 C 0 I 318 e mm10.chr1 178817583 3110 + 195471971 I e canFam3.chr7 36386303 3530 + 80974532 I a score=834500.000000 s hg38.chr1_KI270759v1_alt 231453 287 + 425601 tgagcgaagatttaaaggagatgagggagtgagcca-tatgcccatctccatctcggcagagcattccaggctgactcaagagcctgtgcaaaggccctgagatggggattggaccaagaatatttggaggctaggatgactggagcagaatcatcaaagaagagagtagtaggaaaagtggtctgagggatat-ggggggaagggacagaccacgt-aggctttataggccactgcaagtactttggcttttactctgagtgatatggagagccaaagggagggccttg s panTro4.chr1 224986030 287 + 228333871 tgagcgaagatttaaaggagatgagggagtgagcca-tatgcccatctccatctcggcagagcattccaggctgacgcaagagcctgtgcaaaggccctgagatggggattggaccaagaatatttggaggctaggatgactggagcagaatcatcaaagaagagagtagtaggaaaagtggtctgagggatat-ggggggaagggacagaccacgt-aggctttataggccactgcaagtactttggcttttactctgagtgatatggagagccaaagggagggccttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226352760 287 - 229942017 tgagcgaagatttacaggagatgagggagtgagcca-tatgcccgtctccgtctgggcagagcataccaggctgacgcaagagcctgtgcaaaggccctgagatggggattggaccaagagtatatggaggctaggatgactggagcagaatcatcaaagaagagagtagtaggaaaggtggtctgagggatat-ggggggaagggacagaccacgt-aggctttgtaggccactgcaagtactttggcttttactctgagtgatatggacagccaaagggaggggcttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140236936 288 - 143122389 tgagcaaagatttaaaggagatgagggagtgagcccttatgcccgtctccatctgggcagagcattccaggctgatgcaagagcctgtgcaaaggccctgagatggggattggaccaagagtatttggaggctaggatgactggagcagaatcatcaaagaagagagtagtaggaaaggtggtctgagggatat-ggggggaagggacagaccatgt-aggctttataggccactgcaagtactttggcttttactctgagtgatatggaaagccaaggggaaggccttg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16947734 287 - 229590362 tgagcgaagatttaaaggagatgagggagtgagcca-tatgcccgtctccatctgggcagagcattccaggctgacacaagagcctgtgcaaaggccccgagatggggattggaccaagggtatttggaggctaggatgactggagcagaatcatcaaagaagagagtagtaggaaaggtggtctgagggatat-gggggaaggggacagaccatgg-agacttcataggccactgcaagtactttggcttttactctgagtgatatggagagtcaaacggagggccttg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223710568 287 - 227556264 tgagcgaagatttaaaggagatgagggagtgagcca-tatgcccgtctccatctgggcagagcattccaggctgacacaagagcctgtgcaaaggccccgagatggggattggaccaagggtatttggaggctaggatgactggagcagaatcatcaaagaagagagtagtaggaaaggtggtctgagggatat-gggggaaggggaaagaccatgg-gggcttcataggccactgcaagtactttggcttttactctgagtgatatggagagtcaaacggagggccttg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16761116 287 - 220367699 TGAGCGAAGATTTAAAGGAGATGAGGGAGTGAGCCA-TATGCCCGTCTCCATCTGGGCAGAGCATTCCAGGCTGACACAAGagcctgtgcaaaggccccgAGATGGGGATTGGACCAAGGGTATTTGGAGGCTAGGATGACTGGAGCC-AATCATCAAAGAAGAGAGTGGTGGGAAAGGTGGCCTGAGGGATATGGGGGGAAGGGGACAGACCATGG-AGGCTTCATAGGCCACTGCAAgtactttggcttttactctgagtgataTGGAGAGTCAAATGGAGGGCCTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82559141 285 + 85787240 tgagcgaagatttaa---agatgagggagtgagcca-tgtgcccgtctccatctgggcagagcattccaggctgacacaagagcctgtgcaaagaccccgagatggggattggaccaagagtatttggaggctaggatgactggagcagaaccatcagagaagagagtagtaggaaaggtggtctgagggatatagggggacggggacagagcatgg-aggttttataggccactgcaagtactttggcttttactctgagtgatatggagagtcaaatggaggaccttg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14242427 280 - 49578535 tgagcaaagatttaaaggagatgagggagggcgcca-tatgcctgtgtctatctgggcagagcattccaggttgaggcaacagcctgtgcaaaggccctgagatgggtattggaccaagaatatttgg-----agtatgactgaagcagaataatcaaagaagagagtggtaggagaggtgtcctgaggggcac---ggggaggggacaggccatgtcaggcctaataggccacttcaagcactttgggttttactccgagtgata-ggagagtcaaatgcagtgccctg i calJac3.chr19 I 318 C 0 e mm10.chr1 178817583 3110 + 195471971 I e canFam3.chr7 36386303 3530 + 80974532 I a score=3357645.000000 s hg38.chr1_KI270759v1_alt 231740 1097 + 425601 agcagacttaaatcttaaaagagttactctggctcctttgtgaa--------taggcaggtggagagcgagt---------acagaagatggcagacaagttaggagactgtggcagcaattca-gcaagagaagtctgtggctctgaccaagatggt---agtaaaggtggtgagaggtgatgggatcacagatctactttgaagttttagccaacaaaacttcctgatggatt--atgt-----gtgagaagaagacaggtcagcatcgaagaagtcattggaaggatggaattgccattttctgatacaggaaatgctgaatgtgtaacagctttgcagg---aaaaacatcaggacttcagttttagggttggcaagcttgagatgtttattagatatccaagtggaattgtt---gaagaggtaa-ttagatacataaataa----ggatttccagagagggatctaagctggaaat-aaa-----aattgattaatcataggcattaaggatgttatttaaatcatgatcctggaagaaaacaccaagggattgagtgaagcagtaaagaggaca-aggactgagccctgaggc-ctccatcgttaagaagctgggcaga-agagaaggaaccagcaaaggaaactggaaaggaatggcca-gggtgtcctagaaaccg--agcagaaagggtatcaaggaggaaggacctactcactgctctgagaggtc----aagatggggctgagaaccattaacttgagcaa--tcatggtggtcattgggaacccagacaagagcagtttcagatgagtcatgggacacatgcctgaatgg----------aatgagcttatagataatggaaggagagggcctgcagaaggccagcacagacaacactttccctgagttttgcggccaagat-gggcaaggaagtagaacagtagctggctggg---gaagaatcaggag-aaggatttgtgttttatg--ttttaagat---------------------------------------gagag---------aaataacaacatgtctatgtgctgttgggaatgatctagt-------agcgtgaaagtttg------t-------------aggagggagagggaggagGGAAACCTTGGAGGGATATCCTGGGGTGTGCTTTAC-----------TTTCAGGGATCCTCGCTTTTCTCCT-------CAGCAGGG--GATGTGTGGGG s panTro4.chr1 224986317 1110 + 228333871 agcagacttaaatcttaaaagagttactctggctcctgtgtgaa--------taggcaggtggagagcgagt---------acagaagatgggagacaagttaggagactgtggcagcaattca-gcaagagaagtctgtggctctgaccaagatggt---agtaaaggtggtgagaggtgatgggatcacagatctactttgaagttttagccaacaaaacttcctgacggatt--atgt-----gtgagaagaagacaggtcagcatcgaagaagtcattggaaggatggaattgccattttctgatacaggaaatgctgaatgtgtaacagctttgcagg---aaaaacatgaggacttcagttttagggttggcaagcttgagatgtttattagatatccaagtggaattgtt---gaagaggtaa-ttagatacataaataa----ggatttccagagagggatctaagctggaaat-aaa-----aattgattaatcataggcattaaggatgttatttaaatcatgatcctggaagaaaacaccaagggattgagtgaagcagtaaagaggaca-aggactgagccctgaggc-ctccatcgttaagaagctgggcaga-agagaaggaaccagcaaaggaaactggaaaggaatggcca-gggtgtcctagaaaccg--agcagaaagtgtatcaaggaagaaggacctactcactgctctgataggtc----aagatggggccgagaaccattaacttgagcaa--tcatggtggtcattgggaacccagacaagagcagtttcagatgagtcatgggacacatgcctgaatgg----------aatgagctcatagataatggaaggagagggcctgcagaaggccagcacagacaacactttccctgagttttgcggccaagat-gggcaaggaagtagaacagtagctggctggg---gaagaatcaggag-aaggatttgtgttttatg--ttttaagat---------------------------------------gagag---------aaataacaacatgtctatgtgctgttgggaatgatctagt-------agcgtgaaagtttg------taggaaggagaaggaggagggagagggaggagggaaacctttgagGGATATCCTGGGGGGTGCTTTTC-----------TTTCAGGGATCTTTGCCTTTTTCCT-------CACCAGGG--GATGTGTGGGG i panTro4.chr1 C 0 I 359 s ponAbe2.chr1 226353047 1104 - 229942017 agcagacttagatcttgaaagagttactctggctcctgtgtgaa--------taggcaggtggagagcgggt---------acagaagatgggagacaagttaggagactgtggcagaaatcca-gcaagagaagtctgtggctctgaccaagatggt---agtaaaggtggtgagaggtggtgggaccacagatctactttgaagttttagccaacaaaacttcctgatggattagatgt-----gtgagaagaagacaggtcagcattgaagaagtcattggaaggatggaattgccattttctgatacaggaaaggctgaatgtgtaacagctttgcagg---aaaaacatcaggacttcagttttagggatggcaagcttgagatgtttattagctatccaagtggaattgtt---gaagaggtaa-ttagatacataaataa----ggagtttcagagaggtatctaagctggaaat-aaa-----agtagattaatcataggcattaaggatgttatttaaatcatgatcctggaagaaaacaccgagggattgagtgaagcagtaaagaggaca-aggactgagccctgaggc-ctccatcgttaagaaactgagcagagagagaaggaaccagcaaaggaaactggaaaggaatggcca-gggtgtcctagaaacca--agtagaaagtgtatcaaggaggaaggacctactcagtgctctgataggtc----aagatggggctgagaaccattaacttgagcaa--tcatggtggtcattgggaacccagacaagagcagtttcggatgagtcgtgggacacatgcctgaatga----------aatgagcttacagataatggaaggagagggactggagaaggccaacacggacaacactttccctgagttttgctgccaagatggggtgaggaagtacaacagtagctggctagggaagaagaatcaggagaaaggatttgtgttttatg-tttttaagat---------------------------------------gagag---------aaataacaatgtgtctatgtgctgttgggaatgatctagt-------agcgtgaaagtttg------t--------------agaggaagagggaggagggaaaccttggagggatatcct-gggtatgcTTTAC-----------TTTCAGGGATCCTTGCTTTTATCCT-------CGGCAGGG--GATGTGTGGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140237224 1110 - 143122389 agcagacttaaattttaaaagagttactctggcttctgggtgaa--------taggcaggtggagagtgagt---------acagaagatgggagacaagttaggagactgtggcagcaatcca-gcaagagaagtctgtggctctgaccaagatggt---agtaaaggtggtgagaggtgatgggatcacagatctactttgaagttttagccaacaaaacttcctgatggattagatgt-----gtgagaagaagacaggtcagcacggaagaagtcattggaaggatggaattgccattttctgatacaggaaaggctgaatgtgtaacagctttgcaga---aaaaaaatcaggacttcagttttagagatggcaagcttgagatgtttattggctatccacgtggaattgtt---gaagaggtaa-ttagatacataaataa----ggatttccagagagggatctaagctggaaataaaa-----aattgattaatcataggcattaaggatgttatttaaatcgtgatcctggaagataacaccgaagcgttgagtgaagcagtaaagaggaca-aggactgagccctgaggc-ctccatcgtgaagaagctgggcaga-agagaaggaaccagcaaaggaaactggaaaggaatggcca-gggtgtcctagaaacca--aggagaaagtgtatcaaggaagaaggacctactcagtgctctgataggtc----aagatggggctgagaaccattaacttgagcaa--tcatggtggtcattgggaacccagacaagagcagtttcagatgagtcgtgggacgcatgcctgaatga----------aatgagcttatagacaatggaaggagagggactggagaaggccggcacagacaacactttccctgagttttgctgccaagat-gggcgaggacgtagaacagtagctggctagggaagaagagtcaggag-aaggatttgtgttttatg--ttttaagat---------------------------------------gagag---------aaagaacaatgtgtctatgtgctgttgggaatgatctagt-------agagtgaaagtttg------t-------------aggagggagagggaggagggaaaccttgaagggatatcctggggtGTGCTTTGC-----------TTTCAAGGATCTTTGCTTTTCTCCTTGGAAAACATCAGGG--GATGTGTGGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16948021 1100 - 229590362 agcagacttaaattttaaa--agttactctggcttccgtgtgaa--------tagacaggtggagagtgggt---------acagaagatgggagacaagttaggagactgtggcagcaatcca-gcaagagaagtctgtggctctgaccaagatggt---agtaaaggtggtgagaggtggttggaccatagatctgctttgaagttttagccaacgaaacttcctgatggattagatgt-----gtgagaagtagagaggtcaacatcaaagaagtcattagaaggatggaattgccattttctgatacaggaaaggctgaatgtgtaacagcgttgcaggt--aaaaaaatcaggacttcagttttagagatggcaagcttgagatgtttgttagatatccaagtggaattgtt---gaagaggtaattttgatacataaataa----ggagttccagagagggatctaagctggaaat-aaa-----aattgactaatcctaggcattcaggatgttatttaaatcacgatcctggaagaaaacaccaagggattgagtgcagcagtaaagaggacg-aggactgagccctgaggc-cgccatcattaagaggctgggcaca-agagaaggaaccagcaaaggaaactggaaaggaacagcca-gggtgtcctagaaacct--agcagaaagtgtatcaaggaggaaggacctactgagggctctgattggtc----aagatggggctgagaaccattaacttgagcaa--tcatggtggtcatcgggagcccagacaagggcggtttcagatgagtcgtgggacacatgcctgaatga----------aatgagcttatcgatagtggaaggagagggactggacaaggccagcatagacgacactttccctgagttttgctgccaggat-gggcaaggaagtagaacagtagctggctggggaagaagaatcaggag-aaggatt--tgttttata--ttttaagat---------------------------------------gagag---------aagtaacaacacatctgcgtgctgttgggaatgatctagt-------cgcgtgaaagtttg------t-------------aggagggagagggaggagggaagccttggagggatatcctggggtGTGCTTTAC-----------TTTCAAGGATCCTTGCTTTTCTCCG-------CAGCAGGG--CATGTGTGGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223710855 1100 - 227556264 agcagacttaaattttaaa--agttactctggcttccgtgtgaa--------tagacaggtggagagtgggt---------acagaagatgggagacaagttaggagac--tggcagcaatcca-gcgagagaagtctgcggctctgaccaagatggt---agtaaaggtggtgagaggtggttggaccatagatctgctttgaagttttagccaacgaaacttcctgatggattagatgt-----gtgagaagtagagaggtcaacatcaaagaagtcattagaaggatggaattgccattttctgatacaggaaaggctgaatgtgtaacagcgttgcaggtaaaaaaaaatcaggacttcagttttagagatggcaagcttgagatgtttgttagatatccaagtggaattgtt---gaagaggtaattttgatacataaataa----ggagttccagagagggatctaagctggaaat-aaa-----aattgattaatcctaggcattcaggatgttatttaaatcatgatcctggaagaaaacaccaagggattgagtgcagcagtaaagaggacg-aggactgagccctgaggc-cgccatcattaagaggctgggcaca-agagaaggaaccagcaaaggaaactggaaaggaatggcca-gggtgtcctagaaacct--agcagaaagtgtatcaaggaggaaggacctactgagggctctgactggtc----aagatggggctgagaaccattaacttgagcaa--tcacggtggtcatcgggagcccagacaagggcggtttcagatgagtcgtgggacacatgcctgaatga----------aatgagcttatcgatagtggaaggagagggactggacaaggccagcatagacgacacttttcctgagttttgctgccaggat-gggcaaggaagtagaacagtagctggctggggaagaagaatcaggag-aaggatt--tgttttatt--ttttaagat---------------------------------------gagag---------aagtaacaacacatctgcgtgctgttgggaatgatctagt-------cgcgtgaaagtttg------t-------------aggagggagagggaggagggaagccttggagggatatcctggggtGTGCTTTAC-----------TTTCAAGGATCCTTGCTTTTCTCCG-------CAGCAGGG--CATGTGTGGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16761403 1101 - 220367699 AGCagacttacattttaaa--agttactcTGGCTTCTGTGTGAA--------TAGACAGGTGGAGAGTGGGT---------ACAGAAGATGGGAGACAAGTTAGGAGACTGTGGCAGCAATCCA-GCAAGAGAAGTCTGTGGCTCTGACCAAGATGGT---AGTAAAGGTGGTGAGAGGTGGTTGGACCATAGATCTGCTTTGAAGTTTTAGCCAACGAAACTTCCTGATGGATTAGATGT-----GTGAGAAGTAGAGAGGTCAACATCAAAGAAGTCATTAGAAGGATGGAATTGCCATTTTCTGATACAGGAAAGACTGAATGTGTAACAGCATTGCAGGT-aaaaaaaaTCAGGACTTCAGTTTTAGAGATGGCAAGCTTGAGATGTTTGTTAGATATCCAAGTGGAATTGTT---GAAGAGGTAATTTTGATACATAAATAA----GGAGTTCCAGAGAGGGATCTAAGctggaaat-aaa-----aattgattaatcCTAGGCATTCAGGATGTTATTTAAATCATGATCCTGGAAGAAAACACCAAGGGATTGAGTGCAGCAGTAAAGAGGACT-AGGACTGAGCCCTGAGGC-CGCCATCATTAAGAGGCTGGGCACA-AGAGAAGGAACCAGCAAAGGAAACTGGAAAGGAATGGCCA-GGGTGTCCTAGAAACCT--AGCAGAAAGTGTATCAAGGAGGAAGGACCTACTGAGGGCTCTGATTGGTC----AAGACGGGGCTGAGAACCATTAACTTGAGCAA--TCACGGTGGTCATCGGGAGCCCAGACAAGGGCAGTTTCAGATGCGTCGTGGGACGCATGCCTGAATGA----------AATGAGCTTATCGATAGTGGAAGGAGAGGGACTGGACAAGGCCAGCATAGACGACACTTTCCCTGAGTTTTGCTGCCAGGAT-GGGCAAGGAAGTAGAACAGTAGCTGGCTGGGGAAGAAGAATCAGGAG-aaggatt--tgctttatt--ttttaagat---------------------------------------gagag---------AAGTAACAACACATCTGTGTGCTGTTGGGAATGATCTAGT-------CGCGTGAAAGTTTg------t-------------aggagggagagggaggagggaagcctTGGAGGGATATCCTGGAGTGTGCTTTAC-----------TTTCAAGGATCCTTGCTTTTCTCCG-------CGGCAGGG--CATGTGTGGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82559426 1102 + 85787240 agcagactgaaattttaaa--agttactctggcttctgtgtgaa--------tagacaggtggagagtgggt---------acagaagatgggagacaagttaggagactgtggcagcaatcca-gcaagagaagtctgcggctctgaccaagatggt---ggtaaaggtggtgagaggtggttggatcgtagatctgctttgaagttttagccaacgaaatttcctgatggattagatgt-----gtgagaagtagagaggtcagcatcaaagaagtcattagaaggatggaattgccattttctgatacaggaaaggctgaatgcataacagcgttgcaggtaaaaaaaaatcaggacttcagttttagagatggcaagcttgagatgtttgttagatatccaagtggaattgtt---gaagaggtaattttgatacagaaataa----ggagttccagagagggatctaagctggaaat-aaa-----aattgattaatcctaggcattcaggatgttatttaaatcatgatcctggacgaaaacaccaagggattgagtgcagcagtacagaggacg-aggactgagccctgaggc-cgccatcattgagaggctgggcaga-agagaaggaaccagcaaaggaaactggaaacgaatggcca-gggtgtcctagaaacat--agcagaaagtgtatcaaggaggaaggacctactgaggactctgataggtc----aagatggggctgagaaccattaacttgagcaa--tcatggtggtcattgggagcccagacaagagcagtttcagatgagtcgtgggacacatgcctgaatga----------aatgagcttataggtaatggaaggagagggactggacaaggccagcatagacaacactttccctgagtcttgctgccaggat-gggcaaggaagtagaacagtagctggctggggaagaagaatcaggag-aaggatt--tgttttatg--ttttaagat---------------------------------------gagag---------aagtaacaacacatctgcgtgctgttgggaatgatctggg-------agcgtgcaagtttg------t-------------aggagggagagggaggagggaagccttggagggatatcctggggtGTGCTTTAC-----------TTTCAAGGATCCTTGCTTTTCTCCA-------CAGCAGGG--CATGTGTGGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14242707 1076 - 49578535 agaagacttaaattctgaa-gagctgctctggctcctctgtgaa--------taggcaggtgaggagcaggt---------tcagaggatggg-gacaagttaggagac--ttgcagccatcca-gcaagagaagtctgtggctctgaccaagctgct---ggaaaaggtggtgagagggggctggatcatggatctactttgaagttttaaccgacaaaacttcctgatgcattagacgt-----gtgaga---agagagggcagcctcggagaagtcattggaaggatggacttgccattttctgatgcaggaaaggctgaacgcccaacaactctgcagg----------------------ttttagagcgggcaagctcgaggtgttcattagataaaccagtggagttgtt---aaagaggtaa-ttagatacataaagat----ggagcttcagagagggatctaagctggaaat-aaaataagaattgattaatcacaggcatgaaggatcttatttaaatcatgctcctggaaggaagcacagagggatagag-gtagcaggacagatgatg-aggacggagccctgag----cccatcagtgagaggctgggcgga-agagatggaaccagcaaaggagactggaaaggaggggcca-gggtgtcctcaaagcct--ttgagaaagggcgtcacggaggaagggtgtactcagtgccctggcaggtc----aagacggggctgagaaccattccactgagcag--tcatggtggttatcggtaacctagacgag----------tatgagcagtgggacacacgcctgaagcatggacacacgactgagctcatggacaacggaaggagaaggactggagagagcgagcacagacaacaccttccctgaggtttgctgccaagat-gggcaaggaagtggaatagtagccggatggggaacaagaatcaggat-aaggatttgtgttttattttttttaagat---------------------------------------gagag---------aaataacgacatgtctgtgtgccattgggaa-------gt-------agagtgaaagtttgg--ttat-------------aggagagagagggaggagggcaaccttggagggatgtcTCGGGGTGTGCTTTAA-----------TTTCAGAAATCCTCGCTTTTCTCCT-------CTGCAGGG--GATGTGTGGGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36389833 1166 + 80974532 AGCAG--ttatattttaaaagaaccgctctgataacggtgtggaaagcagcctgggcagttggggtgggggcagaggggcaagagaggaagggagacgagttaggagactattctagaaacccaggcaagaggagttagtgactaagacagagatagtgacagtaatggcggtgagatgcagt-ggatcacagacatgttctggacttatagccaatatgatttcctgatggattggctctgaaaagtgaaagcaagaggagtcagagatgtcgaggccattgcatggatggaactatcattttctagaagagggaaggctgaggggac-acagcttttcagg----aaaagatcaagaatttagtgtc--------taagtttgagacatggattagatatgcaggtggaattgttatggagggggtaa-ttggataaataaataaatacagaggtctagggagaggtctaagcttgaaat-aaa-----aatttaggggtcatgggcatt-gtaatgttatttaaatgatgctcctggaagataacagccagagactgagtgtagacatgaagaggacgaaggactgaaccctgaggcaccccactgctgagagggtgggagga-agagaagaaaccagtgaagagaatcacaagggcatgaccacaaatgtcctggaagcctcaggaagaaagtgcatgaaagc-taagggtataatcagtgctctgatgggtcagtaaagatggggccgggaatcacatcgctgagctaggtcatgcaggtcattggcagct--------------------------gtgggtcggaccctcgtctgg----------aatgaactccaaggccagggaaggagaggaaccagagaaaacaagtttagacagc-cttgccatgagatttg-tgcaaagat-gagtgaggaaacagaatgggagctggctgcaga--aagagtcaagaa-gaggatt--tgtgttttc--ttttaagatttcctttaaacaaaaacaaacaaacaaaaaacaacaacaaaaagatttcctttaaacagcagcacacttgtatgctgctgggaatgatccagtgttttccagagtgaaaatttggcattgt-------------aggagagagagagg-------aaccccagggtgatatccttgggAGTGCTTTGCATATGCTTTAACTTCCAGGATCCTCACTCTCCTCCT-------CTGTGGGGTCTCTGTGTGGGG i canFam3.chr7 I 3530 C 0 e mm10.chr1 178817583 3110 + 195471971 I a score=141761.000000 s hg38.chr1_KI270759v1_alt 232837 53 + 425601 ------TGGGCCTGGGTGGCAGAGATAAGAAAAAGGAAAAAGCCATGAGGCTACTGCCC s ponAbe2.chr1 226354151 53 - 229942017 ------TGGGCCTGGGTGGCAGAGATAAGAAAAAGGAAAAAGCCATGAGGCTACTGCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140238334 53 - 143122389 ------TGGGCATGGGTGGCAGAGATAAGAAAAAGGAAACAGCCATGAGGCTACTGCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16949121 52 - 229590362 ------TGGGCATGGGTGGCAGAGATAAG-AAAAGGAAAAAGCCATCAGGCTACTGCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223711955 52 - 227556264 ------TGGGCATGGGTGGCAGAGATAAG-AAAAGGAAAAAGCCATCAGGCTACTGCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16762504 52 - 220367699 ------TGGGCATGGGTGGCagagataag-aaaaggaaaaagccatCAGGCTACTGCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82560528 52 + 85787240 ------TGGGCATGGGTGGCAGAGATAAG-AAAAGGAAAAAGCCATCAGGCTACTGCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14243783 53 - 49578535 ------TGGACATGGGTGGCAGAGATGAGAAAAAGAAAGAAGCCATCAGGCTCCTGCCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36390999 59 + 80974532 TGCAGGTGGGCACACACTGTAGAGATAAGAAAAAGGAAGAAGCCAGCAGGCCACTGCCT i canFam3.chr7 C 0 C 0 e mm10.chr1 178817583 3110 + 195471971 I e panTro4.chr1 224987427 359 + 228333871 I a score=355445.000000 s hg38.chr1_KI270759v1_alt 232890 105 + 425601 GTTCTAAGCTGCCTTTCAGTATCACTCCCT---TCCCCTGTCTGTCTCTCCATGTGGACTGGGAACCCCAGCAGGTAGGGGAGTGGGAACCATA-GC--CATTGCCTGGTC s panTro4.chr1 224987786 105 + 228333871 GTTTTAAGCTGCCTTTCAGTATCATTCCCT---TCCCCTGTCTGTCTCTCCATGTGGACTGGGAACCGCAGCAGGTAGGGGAGTGGGAACCATA-GC--CATCGCCTGGTC i panTro4.chr1 I 359 C 0 s ponAbe2.chr1 226354204 108 - 229942017 ATTCTAAGCTGCCTTTCAGTATCACTGCCTTCCTCCCCTGTCTGTCTCTCCATGTGGACTGGGAACCCCAGCAGGTAGGGGAGTGGGAACCATA-GC--CATCGCCTGGTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140238387 104 - 143122389 GTTCTAAGCTGCCTTTCAGTGTCACT-CCT---TCCCCTGTCTGTCTCTCCATGTGGACTGGGAACCCCAGCTGGTAGGGGAGTGGGAACCATA-GC--CATCACCTGGTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16949173 105 - 229590362 GTTTTAAGCTGCCTTTCGGTGTCACTCCCT---TCCTCTGTCTGTCTCTCCATGTGGACTGGGAACCCCAGCAGGTAGGGAAGTGGGAACCATA-GC--CATCACCTGGTC i rheMac3.chr1 C 0 I 234 s macFas5.chr1 223712007 105 - 227556264 GTTTTAAGCTGCCTTTCGGTGTCACTCCCT---TCCCCTGTCTGTCTCTCCATGTGGACTGGGAACCCCAGCAGGTAGGGAAGTGGGAACCATA-GC--CATCACCTGGTC i macFas5.chr1 C 0 I 920 s papAnu2.chr1 16762556 105 - 220367699 GTTTTAAGCTGCCTTTCGGTGTCACTCCCT---TCCCCTGTCTGTCTCTCCACGTGGACTGGGAACCCCAGCAGGTAGGGGAGTGGGAACCATA-GC--CATCacctggtc i papAnu2.chr1 C 0 I 306 s chlSab2.chr25 82560580 105 + 85787240 GTTTTAAGCTGCCTTTCGGTGTCACTCCCT---TCCCCTGTCTGTCTCTCCATGTGGACTGGGAACCCCAGCAGGTAGGGGAGTGGGAACCATA-GC--CATCACCTGGTC i chlSab2.chr25 C 0 I 311 s calJac3.chr19 14243836 104 - 49578535 GTTCTAAGCTGCCCTTCAGTGTCACT-CCT---TCCCCTGTCTGTTTCTCCATGTAGAGTGGGAATGCCGGCAGGTAGGGGGCTGGGAACCGTA-GC--CATCGCCTGGTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36391058 100 + 80974532 TTTCTAAGCTGTCTTTTGGTGT-----CTT---TCCCCTGTC--TCTCCACATTTGCACTGGGAACCCCAGCTGGTAGGGG-GTGGGAACCACACGCCGCAACTCCAGGTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178817583 3110 + 195471971 I a score=2033166.000000 s hg38.chr1_KI270759v1_alt 232995 686 + 425601 CTTTTTACACTGTGAAAAGGAACCTTGAATGTAGATGGATAAACACCATCTTTTAGTTCCTGGCAGATCACTGTCTTCCTTCTTGTTCTAGTCCTCTGAGACATAGGCAGGCTGGCTTGAGAGCAGGGAGGGATCGCTGAGCAGAGGTGTGTGCGGG-TGTTAGAAGGTGCCATGATGCCTTGTGCCAATGACTGACCTGGGATGAGTCACTGTTCATTTAGGGAGAGA--------ATTTCAAAAGGAA-------------------------TGACTGGT-CATTGAATAATTCCATTTCACCCTTGATTTTAGAAGGAAAGTGCCAGGAAGGGTAGCAATGAG---ATGAAAAAAAAA--GTATTCCTAGGTTTTTCTTTTCACTGATTGAAA--AGAAAGTGT---------CCCGTGCCTTCCCTTTCTCATCATCCTAC----------AAT-AGGGTGACT----------------------TAGGGTATC-----------TTCCCATCAAAATCAGTAATTCCTCA------CATATCTCTTCCCCCTGTATTTCA----CTCTTGTGAAACAGATTTTCAGTTTTACAGATGAGAACAATTAAGCTTTGAAATGGTAACACCATTTGCTATATTTGTGCAGT-GGCAA--TTTTTTAGCTC--AGAATTTATCAAAAGCATGACACTTAATGATACA-GAATTAAAACCAGCTATCCCAGACCATTGAAGGAGACCGGGGTCGGGGAGGGAGAGGCGGTGCAAACGGTGTTGCTTTTGTCTTTCT s panTro4.chr1 224987891 688 + 228333871 CTTTTTACACTGTGAAAAGGAACCTTGAATGTAGATGGATAAACACCACCTTTTATTTCCGAGCAGATCACTGTCTTCCTTCTTGTTCTAGTCCTCTGAGACATAGGCAGGCTGGCTTGAGAGCAGGGAGGGATCGCTGAGCAGAGTTGTGTGCGGG-TGTTAGAAGGCGACGTGATGCCTTGTGCCAATGACTGACCTGGGATGAGTCACTGTTCATTTAGGGAGAGA--------ATTTCAAAAGGAA-------------------------TGACTAGT-CATTGAATAATTCCATTTCACCCTTGATTTTAGAAGGAAAGTGCCAGGAAGGGTAGCAATGAG---ATGAAAAAAAAAAAGTATTCCTAGGTTTTTCTTTTCACTGATTGAAA--AGAAAGTGT---------CCCGTGCCTTCCCTTTCTCATCATCCTAC----------AAT-AGGGTGACT----------------------TAGGGTATC-----------TTCCCATCAAAATCAGTAATTCCTCA------CATATCTCTTCCCCCTGTATTTCA----CTCTTGTGAAATAGATCTTCAGTTTTACAGATGAGAACAATTAAGCTTTGAAATGGTAACACCATTTGCTATATTTGTGCAGT-GGCAA--TTTTTTAGCTC--AGAATTTATCAAAAGCATGACACTTAATGATACA-GAATTAAAACCAACTATCCCAGACCATTGAAGGAGACCGGGGTCGGGGAGGGAGAGGTGGTGCAGACGGTGTTGCTTTTGTCTTTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226354312 694 - 229942017 CTTTTTACTCTGTGAAAAGGAACCCTGAATGTAGATGGATAAACACCACGTTTTAGTTCCTAGCATATCACTATCTTCCTTCTTCTTCTAGTCCTCTGAGACATAGGCAGGCTGGCTTGAAAGCAGGGAGAGATCACTGAACAGAGGTGTGTGTGGGTTGTTAGAAGGCCACGTGATGCCTTGTGCCAATGACTGACCTGGGATGAGTCACTGTTCATTTAGGGAGAGA--------ATTTCAAAAGGAA-------------------------TGACTAGTCCATTGAATAATTCCATTTCACCCTTGATTTTAGAAAGAAAGT--CAGGAAGGGTAGCAATGAAATCATGAAAAAAAAA--GTATTCCTAGTTTTTTCTTTTCACTGATTGAAA--AGAAAGTGT---------CCCGTGCCTTCCCTTTCTCATCATCCTAC----------AATAAGGGTGACT----------------------TAGGCTATC-----------TTCCCATCAAAATCAGTAATTCCTCA------CTTATCTCATCCCCCTGTATTTCA----CTCTTGTGAAATAGATTTTCAGTTTTACAGATGAGAAAAATTAAGCTTTGAAATGGTAGCACCATTTGCTATATTTGTGCAGTGGGCAATTTTTTTTAGCTC--AGAATTTATCAAAAGCATGACACTTAATGATACAGGAATTAAAACCAACTATCCCAGACCATTGAAGGAGACTGGGGTTGGGGAGGGAGAGGTGGTGCAAACGGTGTTGCTTTTGTCTTTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140238491 683 - 143122389 CTTTGTACACTGTGAAAAGGAACCCTGAATGTAGATGGACAAACACCACCTTTTAGTTCCTAGCAGCTCACTATCTTCCTTC---TTCTAGTCCTCTGAGACACAGGCAGGCTGGCTTGCAAGCGGAGAGGGATCACTGAGCAGAGGTGCGTGCAGA-TGTCAGAAGGCCACGTGATGCTTTGTGTCAATGACTGACCTGGGATGAGTCGCTGTTCATTTAGGGAGAGA--------ATCTCAAAAGGAA-------------------------TGACTAGT-CATTGAATAATTCCATTTCACCCTTGATTTTAGAAGGAAAGTGCCAGGAAGGGTAGAAATGAAATCATGAAAAAAAA---GTATTCCTAGTTTTTTCTTTTCACTGATTGAAA--AGAAAGTGT---------CCCGTGCCTTCCCTTTCTAATCATCCCAC----------AAT-AGGGTGACT----------------------TAGGGTATC-----------TTCCCATCAAAATCGGTAACTCCTCA------CTTATCTCAT-TCCCTGTATTTCA----CTCTTGTGAAATAGATTTTCAGTTTTACAGATGAGAAAAATTAAGCTTTGAAACGGTAACACCATTTGCTATATTTGTGCAGT-GGCAA--ATTTTTAGCTC--GGAATTTGTCAAAAGGATGACACTT-ATGATACA-GAATTAAAACCAGCTATCCCAGACCATTAAAAGAGACTGGGGTCGGGGAGGGAGAGGTGGTGCAAACCGTGTTGCTTTTGTCTTTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16949512 685 - 229590362 CTTTTTACACTGTGAAAAGGAACCCTGAATGTAGATGGATAAACAGCACCTTTTAGTTCCTAGCAGATCACCATCTTCCTTC---TTCTAGTCCTCTGAGACATAGGCAGTCTGACTTGACAGCAGGGACGGATCACTGAGCAGAGGTGCATGCAGG-TGTCAGAAGGCCACGTGATGCCTCGTGCCAGTGACTGACCTGGGATGAGTCACTGTTCATTTAGGGAGAGA--------ATCTCAAAAGGAA-------------------------TGACTAGT-CATTGAGTAATTCCATTTCACCCTTGATTTTAGAAGGAAAGTGCCAGGAAGGGTAGCAATGAAATCATGAAAAAAA----GTATTCCTAGTTTTTTCTTCATACTGGTTGAAAAGAGAAAGTGT---------CCCGTGCTTTCCCTTTCTCATCATCCTTC----------CAT-AGGGTGACT----------------------TAGGGTATC-----------TTCCCATCAAAATCGGTAATTCCTCA------CTTATCTCAT-CCCCTGTATTTCA----CTCTTGTGAAATAGATTTTCAGTTTTACAGATGAGAAAAATTAAGCTTTGAAATGATAACACCGTTTGATATATTTGTGCAGT-GGCAA--TTTTTTAGCTC--GCAATTTGTCAAAAGGCTGACACTTAATGACACA-GAATGAAAACCAACTATCCCAGACCATTAAAAGAGACTGGGGCTGGGGAGGGAGAGGCGGTGCAAATGGTGTTGCTTTTGTCTTTCC i rheMac3.chr1 I 234 C 0 s macFas5.chr1 223713032 685 - 227556264 CTTTTTACACTGTGAAAAGGAACCCTGAATGTAGATGGATAAACAGCACCTTTTAGTTCCTAGCAGATCACCATCTTCCTTC---TTCTAGTCCTCTGAGACATAGGCAGTCTGACTTGACAGCAGGGACGGATCACTGAGCAGAGGTGCATGCAGG-TGTCAGAAGGCCACGTGATGCCTCGTGCCAGTGACTGACCTGGGATGAGTCACTGTTCATTTAGGGAGAGA--------ATCTCAAAAGGAA-------------------------TGACTAGT-CATTGAGTAATTCCATTTCACCCTTGATTTTAGAAGGAAAGTGCCAGGAAGGGTAGCAATGAAATCATGAAAAAAA----GTATTCCTAGTTTTTTCTTCGTACTGGTTGAAAAGAGAAAGTGT---------CCCGTGCTTTCCCTTTCTCATCATCCTTC----------CAT-AGGGTGACT----------------------TAGGGTATC-----------TTCCCATCAAAATCGGTAATTCCTCA------CTTATCTCAT-CCCCTGTATTTCA----CTCTTGTGAAATAGATTTTCAGTTTTACAGATGAGAAAAATTAAGCTTTGAAATGGTAACACCGTTTGATATATTTGTGCAGT-GGCAA--TTTTTTAGCTC--GCAATTTGTCAAAAGGCTGACACTTAATGACACA-GAATTAAAACCAACTATCCCAGATCATTAAAAGAGACTGGGGCTGGGGAGGGAGAGGCGGTGCAAATGGTGTTGCTTTTGTCTTTCC i macFas5.chr1 I 920 C 0 s papAnu2.chr1 16762967 685 - 220367699 CTTTTTACACTGTGAAAAGGAACCCTGAATGTAGATGGATAAACAGCACCTTTTAGTTCCTAGCAGATCACCATCTTCCTTC---TTCTAGTCCTCTGAGACATAGGCAGTCTGGCTTGAAAGCAGGGAGGGATCACTGAGCAGAGGTGCATGCAGG-TGTCAGAAGGCCACGTGATGCCTCGTGCCAGTGACTGACCTGGGATGAGTCACTGTTCATTTAGGGAGAGA--------ATCTCAAAAGGAA-------------------------TGACTAGT-CATTGAGTAATTCCATTTCACCCTTGATTTTAGAAGGAAAGTGCCAGGAAGGGTAGCAATGAAATCATGaaaaaaa----GTATTCCTAGTTTTTTCTTCGTACTGGTTGAAAAGAGAAAGTGT---------CCCGTGCTTTCCCTTTCTCATCATCCTTC----------CAT-AGGGTGACT----------------------TAGGGTATC-----------TTCCCATCAAAATCGGTAATTCCTCA------CTTATCTCAT-CCCCTGTATTTCA----CTCTTGTGAAAtagattttcagttttacagatgagaaaaattaagCTTTGAAATGGTAACACCGTTTGATATATTTGTGCAGT-GGCAA--TTTTTTAGCTC--GCAATTTGTCAAAAGCCTGACACTTAATGACACA-GAATTAAAACCAACTATCCCAGACCATTAAAAGagactggggctggggagggagaggcGGTGCAAATGGTGTTGCTTTTGTCTTTCC i papAnu2.chr1 I 306 C 0 s chlSab2.chr25 82560996 684 + 85787240 CTTTTTACACTGTGAAAAGGAACCCTGAATGTAGATGGATAAACAGCACCTTTTAGTTCCTAGCAGATCACCATCTTCCTTC---TTCTAGTCCTCTGAGACGTAGGCAGTCTGGCTTGAAAGCA-GGAGGGATCACTGAGCAGAGGTGCATGCAGG-CGTCAGAAGGCCACGTGATGCCTCGTGCCAGTGACTGACCTGGGATGAGTCACTGTTCATTTAGGGAGAGA--------ATCTCAAAAGGAA-------------------------TGACTAGT-CATTGAGTAATTCCATTTCACCCTTGATTTTAGGAGGAAAGTGCCAGGAAGGGTAGCAATGAAATCATGAAAAAAA----GTATTCCTAGTTTTTTCTTTGTACTGGTTGAAAAGAGAAAGTGT---------CCCGTTATTTCCCTTTCTCATCATCCTTC----------CAT-AGGGTGACT----------------------TAGGGTATC-----------TTCCCATCAAAATCGGTAATTCCTCA------CTTATCTCAT-CCCCTGTATTTCA----CTCTTGTGAAATAGATTTTCAGTTTTACAGATGAGAAAAATTAAGCTTTGAAATGGTAACACCGTTTGAGATATTTGTGCAGT-GGCAA--TTTTTTAGCTC--GCAATTTGTCAAAAGCCTGACACTTAATGACACA-GAATTAAAACCAACTAACCCAGACCATTAAAAGAGACTGGGGCTGGGGAGGGAGAGGCGGTGCAAATGGTGTTGCTTTTGTCTTTCC i chlSab2.chr25 I 311 C 0 s calJac3.chr19 14243940 726 - 49578535 CTTTTTCCGCTGTAAAAAACAACCGTGTATGTAGATGGATAAATGCTGCCTTTTAGTTCCCAGCAGGTCGCCATCTTCTTTCCTCTTCTAGCCCTCCGAGACACAGGCAGGCTGGCTGGAGAGCAGGGAGGGATCGCTGAGCAGAGGTGCGTGCCGG-TGTC-GAGGGCCATGTGATGCCTCGGTCCGATGACTG-CCTGGGCTGAGTCGCTGTTCATTTAGGGAGAGA--------ATCTCAAAAGGAA--GGAAAGCTGCCAAGAGAAGCCTCGGACTGGT-CACTGAAGAATTCCA-TTCACCCTTAACTTTGGAAAGAAAGTGCCAGGAAGAGTAGCAATGAAATAGCAAAGAA------GGATTTCTAGTTTTTTCTTTTGACTGATTGAAAACAGAAAGCAT---------CCAGTGCCTTCCCTTTCCCGCCATCCTGCAGCAGGGCGACGT-AGGGTGACG----------------------TAGGGTATC-----------TTCCCATCAAAATCGGTGACTCCTCACTGGGGCTTCTCTCTTCCCCCTGTATTTCACAATCTCTTGTGAAATAGATTTTTAGCTTTACAGATGAAAAAATGCAAGCATTAAAATGGCAACACCATTTGCCATATTTGTGAGGT-GGCAA--TTTTGTAACTC--GGGATTTGTCAAAAGCATGGCACTTACTGATACA-GAATCAAAACCAACTATCCCAGACCATGAAAAGAGACTGGGATGCAGGAGGG-GCGGAGGTGCAAACAGTGATGCTTTGCTCTTTCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36391158 728 + 80974532 CTGTTGCCATCTCATGAAAGAATCC-AAATGTGAATGAGTGAACACCACCTGTTA----CCAGCAGATCCTCATCCCCCCATCT-CTCCAACTGTCCTGCATCTACACAGCCTGGCTTTGCAGCA---AGGGGTCCCGGGGCAGA----CACATGGG-TGTCAGGATGCAGTG-------------CAGTACACACCCCTGCATGAGCCCCTGTTCTTCGGGGGTGCGGGTGGTGGTATCTCAAGAAGCAATGAAAAACTGTCAAGAGATGCACCGGACCAGT-TATTGAACAACCTCCTTATGCCTTTCATTTTAGAAGGAAAGCATCAGGAAGAGTGGCAATGAGATCATGAAAAAAAGT--TTAGTCCTAGTGTTTTTGTTTTGCTGGTTGGAAGAAGAAAACATTGTGGAAAACCGATACCCTTCATTGTCTGTTGTGGCAC----------AGC-ACAGTGACTGTAGCACTCCCTAAGCATGGCACATGGCATTGGGACCCTGGGTACCCTTCATCCTC--TTGTTCATCA------TGTGTCCCATTCCTCCATATTTCA----CTCTCAGGAAAAAGATTTTCAGGTTTACAGCTAAGAAAATACAAGCTTCGAAGCTGCCATTCCATTTGCTGTATTTGCACAAT-GGCCA--TTCCATAGCTCAAGAGATTTGTCAGAGG-ATGATAATTATGGCCACA-TAATTTAAACTAACTATTCCAGATCTGTA----AGATTGGGGGCAGGAAGAG-------GTACAAACAATGCTGACTCTGCCTTCTT i canFam3.chr7 C 0 I 643 e mm10.chr1 178817583 3110 + 195471971 I a score=1612590.000000 s hg38.chr1_KI270759v1_alt 233681 560 + 425601 GACCTGCTTCTCTCGTGATGTG-TTCTGCAACTGGTAA-GAACATTGGATGAATTATAAGATTTTAAT-CAGTAGAAT-AAAGTCAGGGCGGT-CCTTTCATTTT---AAGCAGCAGCTCAAACATTT---------GATGAGGAAATTAGAATCCTTAGAATAAGAGTTTAGTGTGTAAACATCAAGAATTCATCCAGAAATGAGTATATT-AGAGTCTGTGAAATGCCTTCGCCTCACACTGCCCCTTCCCCTGTTTTCTTCTTCTTTTCTGTGATAAGATGATCATGGAtttgttttg--tttttcttttgagacggagtctcactctgtcacccagcctggagagcagtggcgctatctgggctcactgcaacctccgcctcctgggttcaagcgatcctcctgcctcagcctcccgaatagctgggattacaggcatgcaccaccacacccggctaatttttgtatttttagtagagatggggtttctccatgttggccaggctggtctcgaa----ctcctgacctcaggtgagctgcctgcctcggcctcccaaagtgctgggattacaggtgtgag s panTro4.chr1 224988579 569 + 228333871 GACCTGCTTCTCTCGTGATGTG-TTCTGCAACTGGTAA-GAACATTGGATGAATTATAAGATTTTAAT-CAGTAGAAT-AAAGTCAGGGTGGT-CCTTTCATTTT---AAGCAGCAGCTCAAACATTTCAAACATTTGATGAGGAAATTAGAATCCTTAGAATAAGAGTTTAGTGTGTAAACATCAAGAATTAATCCAGAAATGAGTATATT-AGAGTCTGTGAAATGCCTTTGCCTCACACTGCCCCTTCCCCTGTTTTCTTCTTCTTTTCTGTGATAAGATTATCATGGATGTGTTTCG--tttttcttttgagatggagtctcactctgtcacccagcctggagtgcagtggcgctatctgggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatgcaccaccatacccggctaatttttgtatttttggtagagacggggtttctccatgttggccaggctggtctcgaa----ctcctgacctcaggtgagccacctgcctcggcctcccaaagtgctgggattacaggtgtgag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226355006 580 - 229942017 GACCTGCCTCTCTCGTGATGTGTTTCTGCAACTGGTAAGGAACATTGGATGCATTATAAGATTTTAATCCAGTAGAATAAAAATCGGGGTGGTCCCTTTCATTTT-TAATGCAGCAGCTCAAACATTTCAAACATTTGATGAGGAAATTAGAATTCTTAGAATAAGAGTTTAGTGTGTAAACATGAAGAATTAATCCAGAAATGAGTATATT-AGAGTCAGTGAAATGCCTTTGCCTCACACTGCCCCTTCCCCTGTTTTCTTCTTCTTTTCTGTAATAAGATTATCATGGttttgttttg--tttttcttttgagatggagtcttgcgctgtcgcctagcctggagtgcagtggcgctatctgggcttactgcaacgtccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgtgccaccacacccagctaatttttgtatttttagtagagacagggtttctccatgttggccaggctggtctcgaatactctcctgacctcaggtgagctgcctgccttggcctcccgaagtgctgggattacaggtgtgag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140239174 562 - 143122389 AACCTGCCTCTCTCGTGATGTG-TTCTGCAACTGGTAA-GAACATTGGATGAATTATAAGGTTTTAAT-CAGTAGAAT-AAAGTCAGCGTGGT-CCTTTCATTTT---AAGCAGCAGCTCAAACATTTCAAACATTTGATGAGGAAATTAGAATTCTTAGAATAAGAGTTTAGTGTGTAAACATCAAGAATTAATCCAGAAGTGAGTATATT-AGAGTCTGTGAAATGCCTTTGCCTCACACTGCCCCTTCCCCTGTT---TTCTTCTTTTCTATAATAAGATTATCATGGt----ttttt--tttttcttttgagatggagtctcgctctgtcgcccagcctggagtgtagtggcgctatgtgggctcactgcaacctccgcctcctgggttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgtgccactatacccggttagtttttgtatttttagtagagacggggtttctccatgttggccaggctggtctcgaa----ctcctgacctcaggtgagctgcctgcctcggcctcccaaagtgctgggattacaggtgtgag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16950197 568 - 229590362 GACCTGCCTCTCTCATGATGTG-CTCTGCAGTCGGTAA-GAACATTGGATGAATTATAAGGTTTTAAT-CAGTAGAAT-AAAGTCAGGGTGGT-CCTTTCATTTT---AAGTGGCAGCTCAAATGTTTCGAACATTTGATGAGGAAATTAGAATTCTTAGAATAGGAGTTTAGTGTTTAAACATCAAGAATTAATCCAGAAATGAGTATATTAAGAGTCTGTGAAATGCCTTTACCTCACACTGCCCCTTCCCCTCTT---TTCTTCTTTTCTGTGATAAGATTATCATGGttttgttttg-ctttttcttttgagatggagtctcgctctgtggcccagcctggcgtgcaatggcgctatctgggctcactgcaacctctgcctcccgggttcaagcgattctcctgcttcagcctcctgagtagctgggattacaggtgcatgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaa----ctcctgacctcaggcgagctgcctgcctcggcctcctaaagtgctgggatgacaggtgtgag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223713717 568 - 227556264 GACCTGCCTCCCTCATGATGTG-CTCTGCAGTCGGTAA-GAACATTGGATGAATTATAAGGTTTTAAT-CAGTAGAAT-AAAGTCAGGGTGGT-CCTTTCATTTT---AAGTGGCAGCTCAAATGTTTCGAACATTTGATGAGGAAATTAGAATTCTTAGAATAGGAGTTTAGTGTTTAAACATCAAGAATTAATCCAGAAATGAGTATATTAAGAGTCTGTGAAATGCCTTTACCTCACACTGCCCCTTCCCCTCTT---TTCTTCTTTTCTGTGATAAGATTATCATGGttttgttttg-ctttttcttttgagatggagtctcgctctgtggcccagcctggagtgcaatggcgctatctgggctcactgcaacctctgcctcccgggttcaagcgattctcctgcttcagcctcctgagtagctgggattacaggtgcacgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaa----ctcctgacctcaggcgagccgcctgcctcggcctcctaaagtgctgggatgacaggtgtgag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16763652 568 - 220367699 GACCTGCCTCTCTCATGATGTG-CTCTGCGATCGGTAA-GAACATTGGATGAATTACAAGGTTTTAAT-CAGTAGAAT-AAAGTCAGGGTGGT-CCTTTCATTTA---AAGTGGCAGCTCAAATGTTTCGAACATTTGATGAGGAAATTAGAATTCTTAGAATAGGAGTTTAGTGTTTAAACATCAAGAATTAATCCAGAAATGAGTATATTAAGAGTCTGTGAAATGCCTTTACCTCACACTGCCCcttcccctctt---ttcttcttttctgtgatAAGATTatcatggttttgttttg-ctttttcttttgagatggagtctcgctctgtggcccagcctggagtgcaatggcgctatctgggctcactgcaacctccgcctcccgggttcaagcgattctcctgcttcagcctcctgagtagctgggattacaggtgcatgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctcgaa----ctcctgacctcaggcgagccgcctgcctcggcctcctaaagtgctgggatgacaggtgtgag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82561680 568 + 85787240 GACCTGCCTCTCTCATGATGTG-CTCTGCCATCGGTAA-GAACATTGGATGAATTATAAGGTTTTAAT-CAGTAGAAT-AAAGTCAGGGTGGT-CCTTTCATTTT---AAGTGGCAGCTCAAATGTTTCGAACATTTGATGAGGAAATTAGAATTCTTAGAATAGGAGTTTAGTGTTTAAACATCAAGAATTAATCCAGAAATGAGTATATTAAGAGTCTGTGAAATGCCTTTACCTCGCACTGCCCCTTCCCCTCTT---TTCTTCTTTTCTGTGATAAGATTATCATGGttttgttttg-ctttttcttttgagatggagtctcgctctgtcgcccagcctggagtgcaatggcgctatctgggctcactgccacctccgcctcccgggttcaagcgattctcctgcttcagcctcctgagtagctgggattacaggtgcacgccaccacgcctggctaatttttgtatttttagtagagatgggttttcaccatgttggccaggctggtctcgaa----ctcctgacctcaggtgagccgcctgcctcggcctcctaaaatgctgggatgacaggtgtgag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14244666 572 - 49578535 GGCCTGCCTCTCTTGGGATGTA-TTGTGCAG-TGGTAA-GAACACTGGATGAACCGTAAGGTTTTAAT-CAGTAGGAT-AAAGTCAGGGCTGT-CCTTTCCTTTAGGAAAGCAGCAGCTCACATGTTTCAAACATTTGATGAGGAAATTGGAATTCTTACAACAGGAGTGTAGTATGTAAACATCAAGAATTAATCCAGAAATGAGCGTATT-ATAGACTATGAAATGCCTTTGTCTCACACTGCCCCTTGCCCTGTTTTCTTCCTCTTTTCTGTAATAAGATGATTAT-Attttgttttgtttttttcttttgagacaaagtatccctctgtcgcccaggctggagtgcagtggtgccgtctcagctcactgcaacctctgcctgccaggttcaagcaattctcctgcctcagcttcccaagtcgctggaattaaaggcatgtaccaccacgcctggctaatttttgtatctttagtagagatggggtttcaccgtgttggccagactggtctcgaa----ctcctgacctcatgtgatccatctgcctcagcctcccaaagtgctgggattacaggtgtgaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178817583 3110 + 195471971 I e canFam3.chr7 36391886 643 + 80974532 I a score=22095.000000 s hg38.chr1_KI270759v1_alt 234241 5 + 425601 ccacc s panTro4.chr1 224989148 5 + 228333871 ccacc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226355586 5 - 229942017 ccacc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140239736 5 - 143122389 ccacc i nomLeu3.chr5 C 0 M 115 s rheMac3.chr1 16950765 5 - 229590362 ccacc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223714285 5 - 227556264 ccacc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16764220 5 - 220367699 ccacc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82562248 5 + 85787240 ccacc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14245238 5 - 49578535 ccacc i calJac3.chr19 C 0 C 0 s canFam3.chr7 36392529 5 + 80974532 CCACC i canFam3.chr7 I 643 C 0 e mm10.chr1 178817583 3110 + 195471971 I a score=15342.000000 s hg38.chr1_KI270759v1_alt 234246 9 + 425601 ---gtgcctggc s panTro4.chr1 224989153 9 + 228333871 ---acgcctggc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226355591 9 - 229942017 ---atgcctggc i ponAbe2.chr1 C 0 I 1 s rheMac3.chr1 16950770 9 - 229590362 ---atgcctggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223714290 9 - 227556264 ---atgcctggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16764225 9 - 220367699 ---atgcctggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82562253 9 + 85787240 ---atgcctggc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14245243 9 - 49578535 ---atgctgggc i calJac3.chr19 C 0 C 0 s canFam3.chr7 36392534 8 + 80974532 ACTATAGT---- i canFam3.chr7 C 0 C 0 e mm10.chr1 178817583 3110 + 195471971 I e nomLeu3.chr5 140239741 115 - 143122389 M a score=25690.000000 s hg38.chr1_KI270759v1_alt 234255 8 + 425601 cAAGATTA s panTro4.chr1 224989162 8 + 228333871 cAAGATTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226355601 8 - 229942017 CAAGATGA i ponAbe2.chr1 I 1 C 0 s rheMac3.chr1 16950779 8 - 229590362 cAAGATTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223714299 8 - 227556264 cAAGATTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16764234 8 - 220367699 caagatta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82562262 8 + 85787240 cAAGATTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14245252 8 - 49578535 cAAGATTA i calJac3.chr19 C 0 I 309 s mm10.chr1 178820693 8 + 195471971 CAGGATTA i mm10.chr1 I 3110 C 0 s canFam3.chr7 36392542 8 + 80974532 TAGGAACA i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140239741 115 - 143122389 M a score=299339.000000 s hg38.chr1_KI270759v1_alt 234263 119 + 425601 TCATGTTTTAAGTGTTACAGGACACTTGAATGATGGACGATGTCATTGGAACAGCCTATGTTATTAATGATGCCGGCAGCCTCCCCTCCCACCTTTCCCTGCCTTCACACTCTGTGCCC s panTro4.chr1 224989170 99 + 228333871 TCATGTTTTAAGTGTTCCAGGATACTTG--------------------GAAGAGCCTATGTCATTAATGATGCCGGCAGCCTCCCCTCCCACCCTTCCCTGCCTTCACACTCTGTGCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226355609 119 - 229942017 TCATGTTTTAAGTGTTACAGGATACTTGAATGATGGACGATGTCATTGGAACAGCCTGTGTTATTAATGATGCCGGCAGCCTCCCCTCCCACCTTTCCCTGCCTTCACACTCTGTATCC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16950787 119 - 229590362 TTGTGTTTTAAGTGTTACAGGATACTTGAATGTTGTACGATGTCATTTAAACAGCCTGTGTTATGAATGATGCTGGCCGCCTCCCCTCCCACCTTTCCCTGCCTTCACACTCTGTGCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223714307 119 - 227556264 TTGTGTTTTAAGTGTTACAGGATACTTGAATGTTGTACGATGTCATTTAAACAGCCTGTGTTATGAATGATGCTGGCCGCCTCCCCTCCCACCTTTCCCTGCCTTCACACTCTGTGCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16764242 115 - 220367699 tTGTGTTTTAAGTGTTACAGGATACTTGAATGTTGTACGATGTCATTTAAACAGCCTGTGTTATGAATGATGCTGGCCGcctcccctcccacctttccCTG----CACACTCTGTACCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82562270 115 + 85787240 TCGTGTTTTAAGTGTTACAGGATACTTGAATGTGGTACGATGTCATTTGAACAGCCTATGTTATGAATGATGCTGGCCGCCTCCCCTCCCACCTTTCCCTG----CACACTCCGTGCCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14245569 119 - 49578535 TCATGTTTTCAGTGTTACAGGATACTTGAATGATGGACGATGTCATGCGAACAGCATGTGTTACTAATGATGCTGGAAGCCTTCCCTCCCACGGTTCCCTGTCTCCACCCTCAGTGCCC i calJac3.chr19 I 309 C 0 s mm10.chr1 178820701 119 + 195471971 TCATGCCCTAAGTGCTACAGTGTGCTTGGATGGTGGAAGATGCAGTATGAACAGCCAGCATTATTAATGATGCTGTAGCCACAGCCTCACTCATGTCTCCATCTGTATCTTCTGTGACA i mm10.chr1 C 0 C 0 s canFam3.chr7 36392550 114 + 80974532 TGGTGTTGTAAGTGTTGCAGAACATTTGTACAGTAGAAGACATGATGTGAACAACTGACATTATTAATGATACCAGCAACCT-CCCTCCTGCCTTTCCCCATCT----GCTCCGTGCCA i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140239741 115 - 143122389 M a score=24343.000000 s hg38.chr1_KI270759v1_alt 234382 12 + 425601 ---------CCTTCAGTG----CTT s panTro4.chr1 224989269 12 + 228333871 ---------CCTTCAGTG----CTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226355728 16 - 229942017 ---------CCTTTAGTGCTTTCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140239856 12 - 143122389 ---------CCTTTAATG----CTT i nomLeu3.chr5 M 115 C 0 s rheMac3.chr1 16950906 12 - 229590362 ---------CCTTTAGTG----CTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223714426 12 - 227556264 ---------CCTTTAGTG----CTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16764357 12 - 220367699 ---------CCTTTAGTG----CTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82562385 12 + 85787240 ---------CCTTTAGTG----CTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14245688 3 - 49578535 ----------------------CTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178820820 10 + 195471971 -----------TTTGGTA----CCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36392664 21 + 80974532 CCTTTGTTGGCTCTGGTG----CTT i canFam3.chr7 C 0 I 196 a score=51624.000000 s hg38.chr1_KI270759v1_alt 234394 24 + 425601 TGAC-CCCTTAC---TCCTCGCACTTGA s panTro4.chr1 224989281 24 + 228333871 TGAT-CCCTTAC---TCCTTGCACTTGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226355744 24 - 229942017 TGAC-CCCTTAC---TCCTTGAACTTGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140239868 22 - 143122389 GACC-CCTTTAC---TC--TGCACTTGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16950918 24 - 229590362 TGAC-CCCTTAC---TCCTTGCGGTCAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223714438 24 - 227556264 TGAC-CCCTTAC---TCCTTGCGGTCAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16764369 24 - 220367699 TGAC-CCCTTAC---TCCTTGCGGTCAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82562397 24 + 85787240 TGAC-CCCTTAC---TCCTTGCACTCAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14245691 25 - 49578535 TCACGCCCTTAC---TTTTTGCACTTGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178820830 27 + 195471971 TGAC-CCCCCCCCCTTCCTTGCACTTAT i mm10.chr1 C 0 C 0 e canFam3.chr7 36392685 196 + 80974532 I a score=1606704.000000 s hg38.chr1_KI270759v1_alt 234418 478 + 425601 CCATGAATTGCATTTTGTATTTAAAGACCTCCCTGCACA-----ATATCCTCTTATCTACGTAAGC-------------------------------------------------------AGCCCATAGCCTCAGCGCCCTGCACCCTGGTTGGAGTTCACCTTCTGATTTGGTGGTATA-TTTCTAAAACCAG-----TTTGAT-----TTTTCCTGTTGCACTGGGG---CTTGTGTTTTTCTTCCAGTGCCCTGTACATAGCATGCCTTGACTGGTCTCCACATCGTTCTTCATCAGACTGGTTTGGATTTTACAAGGTGTTAGAGTTTTTAAATTAGCTCATGAGGTCTCTCGCACCTGAGTTTATGCCAGAGAAGTT--------GTGGAGTG-----------ATGAACTTAAT-GGGTGCC-CTTATCCCC--AAAGATGCCCAGCTTTGTT-CCTGCTTAAGCTGAATGTT---GGTGGATAACACAT-CATTCTTTGTAAATCGTGA-----TTGCAGAATCCTGCTATTTTATGGCTTTGTTTTTCCTTTTGTCGTATAAATG-ATTGGGTAGCT s panTro4.chr1 224989305 478 + 228333871 CCATGAATTGCATTTTGTATTTAAAGACCTCCCTGCACA-----ATATCCTCTTATCTACGTGAGC-------------------------------------------------------AGCCCATAGCCTCAGCGCCCTGCACCCTGGTTGGAGTTCACCTTCTGATTTGGTGGTATA-TTTCTAAAACCAG-----TTTGAT-----TTTTCCTGTTGCACTGGGG---CTTGTGTTTTTCTTCCAGTGCCCTGTACATAGCATGCCTTGACAGGTCTCCACATCGTTCTTCATCAGACTGGTTTGGATTTTACAAGGTGTTAGAGTTTTTAAATTAGCTCATGAGGTCTCTCGCACCTGAGTTTATGCCAGAGCAGTT--------GTGGAGTG-----------ATGAACTTAAT-GGGTGCC-CTTATCCCC--AAAGATGCCCAGCTTTGTT-CCTGCTTAAGCTGAATGTT---GGTGGATAACACAT-AATTCTTTGTAAATCGTGA-----TTGCAGAATCCTGCTATTTTATGGCTTTGTTTTTCCTTTTGCCGTATAAATG-ATTGGGTAGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226355768 492 - 229942017 CCATGAATTGCATTTTGTATCTAAAGACCTCCCCACACA-----ATATCCTCTTATCTACGTGAGC-------------------------------------------------------AGCCCATAGCCTCAGCGCCCTGCACCCTGGCAGGAGTTCACCTTCTGATTTGGTGTTATA-TTTCTAAAACCAG-----TTTGAT-----TTTTCCTGTTGCACTGGGG---CTTGTGTTTTTCTTCCGGTGCCCTGTACATAGCATGCCTTGACTGGTCTCCACATGGTTCTTCATCAGACTGGTTTGGATTTTACAAGGTGTTAGAGTTTTTAAATTAGCTCATGAGGTCTCTCGCACTTGAGTTTATGCCAGAGAAGTT--------GTGGAGTG-----------ATTAACTTAACGGGGTGCC-CTTATTCCCCAAAAGATGCCCAGCTTTGTTCCCTGCTTAAGCTGAATGTTAGAGGTGGATAACAAGTAAATTCTTTGTAAATCGTGATTCCCTTGCAGAATCCTGCTATTTTATGGCGTTGTTTTTCCTTTTGCTGTATAAATGAATTGGGTAGCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140239890 478 - 143122389 CCATGAATTGCATTTTGTATTTAAAGATCTCCCTGCACA-----ATATCCTCTTATCTACCTGAGC-------------------------------------------------------AGACCATCGCCTCAGCGCCCTGCACCCTGGCAGGAGTTCACCTTCTGATTTGGTGTTATA-TTTCTAAAACCAG-----TTTGAT-----TTTTCCTGTTGCACTGGGG---CTTGTGTTTTTCTTCCAGTGCCCTGTACATAGCATGCCTTGACTGGTCTCCACATGGTTCTTCGTCAGACTGGTTTGGATTTTACAAGGTGTTAGAGTTTTTAAATTAGCTCATGAGGTCTCTCGCACTTGAGTTTATGCCAGAGAAGTT--------GTGGAGTG-----------ATTAACTTAAT-GGGTGCC-CTTATCCCC--AAAGATGCCCAGCTTTGTT-CCTGCTTAAGCTGAATGTT---GGTGGATAACAAAT-AATTCTTTGTAAATCGTGA-----TTGCAGAATCCTGCTATTTTATGGCTTTGTTTTTCCTTTTGCTGTATAAATG-ATTGGGTAGCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16950942 481 - 229590362 CCATGAATTGCATTTTGTATTTAAAGACCTCCCTGCACA-----GTATCCTCTTATCTATGTGAGC-------------------------------------------------------AGCCCACAGTCTCAGCACCCTACACCCTGGCTGGAGTTCACCTTCTGGTTTGGTGTTATA-TTTCTAAAACCAG-----TTTGAT-----TGTTTCTGTTGCGCTGGGG---CTTGTGTTT---TTCCAGTGCCCTGTACAGAGCAGGCCTCGACTGGTCTCCACATGGTTCTTCATCAGACTGGTTTGGATTTTACAAGGTGTTAGAGTTTTTTGATTAGCTCATGAGG--TCTCGCACTTGAGTGTATGCCAGAGAAGTGATTCATCGGTAGAGTG-----------ATGAACGTAAT-GGGTGCCGTTTATCCCC--AAAGATGCCCAGCTTTGTT--CTGCTTAAGCTCAACATT---GGTGGATAACAAAC-AATTCTTTGTAAATCGCGA-----TTGCAGAATCCTGCTATTTGATGGCTTTGTTTTTCCTTTTGCTGTATAAACG-ACTGGGTAGCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223714462 481 - 227556264 CCATGAATTGCATTTTGTATTTAAAGACCTCCCTGCACA-----GTATCCTCTTATCTATGTGAGC-------------------------------------------------------AGCCCACAGTCTCAGCACCCTACACCCTGGCTGGAGTTCACCTTCTGGTTTGGTGTTATA-TTTCTAAAACCAG-----TTTGAT-----TGTTTCTGTTGCGCTGGGG---CTTGTGTTT---TTCCAGTGCCCTGTACAGAGCAGGCCTTGACTGGTCTCCACATGGTTCTTCATCAGACTGGTTTGGATTTTACAAGGTGTTAGAGTTTTTTGATTAGCTCATGAGG--TCTCGCACTTGAGCGTATGCCAGAGAAGTGATTCATCGGTAGAGTG-----------ATGAACGTAAT-GGGTGCCGTTTATCCCC--AAAGATGCCCAGCTTTGTT--CTGCTTAAGCTCAACATT---GGTGGATAACAAAC-AATTCTTTGTAAATCGCGA-----TTGCAGAATCCTGCTATTTGATGGCTTTGTTTTTCCTTTTGCTGTATAAACG-ACTGGGTAGCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16764393 535 - 220367699 CCATGAATTGCATTTTGTATTTAAAGACCTCCCTGCACA-----GTATCCTCTTATCTATGTGAGCAGCCCACAGTCTCAGCACCCTACACCCTGCACAGTATCCTCTTATCTATGTGAGCAGCCCACAGTCTCAGCACCCTACACCCTGGCTGGAGTTCACC-TCTGGTTTGGTGTTATA-TTTCTAAAACCAG-----TTTGAT-----TGTTTCTGTTGCGCTGGGG---CTTGTGTTT---TTCCAGTGCCCTGTACAGAGCATGCCTCGACTGGTCTCCACATGGTTCTTCATCAGACTGGTTTGGATTTTACAAGGTGTTAGAGTTTTTTGATTAGCTCATGAGG--TCTCGCACTTGAGTGTATGCCAGAGAAGTGATTCATCGGTAGAGTG-----------ATGAACGTAAT-GGGTGCCGTTTATCCCC--AAAGATGCCCAGCTTTCTT--CTGCTTAAGCTCAACATT---GGTGGATAACAAAC-AATTCTTTGTAAATCACGG-----TTGCAGAATCCTGCTATTTGAtggctttgtttttccttttgctgtatAAATG-ACTGGGTAGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82562421 481 + 85787240 CCATGAATTGCATTTTGTATTTAAAGACCTCCCTGCACA-----GTATCCTCTTATCTATGTGAGC-------------------------------------------------------AGCCCGTAGTCTCAGCACCCTACACCCTGGCTGGAGTTCACCTTCTGGTTTGGTGTTATA-TTTCTAAAACCAG-----TTTGAT-----TGTTCCTGTTGTGCTGGGG---CTTGTGTTT---TTCCAGTGCCCTGTACAGAGCATGCCTCGACTGGTCTCCACATGGTTCTTCATCAGACTGGTTTGGATTTTACAAGGTGTTACAGTTTTTTGATTAGCTCATGAGG--TCTCGCACTTGAGTGTATGCCAGAGAAGTGATTCATCAGTAGAGTG-----------ATGAACGTAAT-GGGTGCCGTTTATCCCC--AAAGATGCCCAGCTTTGTT--CTGCTTCTGCTCAACTTT---GCTGGATAACAAAC-AATTCTTTGTAAATCGCGA-----TTGCAGAATCCTGCTATTTTATGGCTTTGTTTTTCCTTTTGCTGTATAAGTG-ACTGGGTAGCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14245716 459 - 49578535 TTGTGAATTGCATTTTGTATTTAAAGACCTCTGTGCACA-----ATATCCTGCTATCTATGTGAAC-------------------------------------------------------AGCCCATCATCTCAGCACCCCACACCCTGGCTAGAGTTCGCCTTCTGATTTGGTCTTATATTTTCTAAACTCAG-----TTTGAT-----TTTCCCTGGGGAACTGGGG---CTTGTGTTTTTCCTCCAGTGCCCCGTGCATAGCGTGCCTTGACTGGCCT-CACATGA---TTCATCAGACTGGTTTGGATTTTACAAGGTGTCAGAGATTTTCAATGAGCTCATGAGGTCTCTC--------------GCCAGAGAAGTT--------GTGGAGTG-----------ATTAACTTAAT-GGGCGCCGTTGATCCCC--ACAGATGCCCCGCGTTGTT-CCTGCTTCAGCTGGATGTT---GGTGGATAACAAAC-CATTCTTTGTAAATCGTGA-----TTGCAGAATCCTGCCACTTTATGGCT---TTTTTTCTTTTGCTGTATAAATG-ATTGGGCAGCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178820857 472 + 195471971 CCATAGACAGCATTTTGTATTTGAAGGTGGTACTGTACA-----AGAGCCCGTTATCCACCTGAGG-------------------------------------------------------AGAGGGTAATCTCA-TGCCCTGCG-CCTCGCTGGAGTGGATAATCTGGCCTGCTGTC-TG-TTCCTCACACCAGGGTACTTTATA-----TTTCTCCAGTGCACTGGGGGGCGTTGTATTC---TGCCAAGCCACT------------CCCCAGTCGGTCACCACCGGGCTCTTCATCAGACGGGCTTGGTTTTTACAAGGTGTAAAAAATTTTAAATGAGCTCATCTGGTTCTTCACAGTTGGGCTTATGCCAGAGAAATG--------GCGGTGTGGGGAGGGGGCAATTAGCGGACT-AGGTACTGCGGGTCCCC--AAAGCTGACTGGCTTCATT-CATGCTCAGGCTGAGTGTT----GTGGAGAACAAAC-AAGTCTTTGTAACTTGCGA-----TCTTGGAGCCATGTGGTTTTATAGCT-------CCTTTCTCCTGTCCCAGTG-ATTACATAGCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36392881 478 + 80974532 cCATGAATTGCACTTTGTATCAAAAGACCACCCTGCACAGAGAGAGAGCCTGTTTTCTACAC-AGC-------------------------------------------------------AGCCCATAGTCTCAGCACCATACACCCTGGCTGGACTT--TTTTCTAATTTGGTGTTATG-TTTCAAAAACGAG-----GTTGATTTATGTTTCCCTGCTGTACAGGGC---CATGTGTTTTTCTTGCACAACCACACACATAGTGTGCCTTGATTGGTCACCACTCAGTTCTTCATCAGGCTGGCTGGGATTTTACAAGGTGTTTGAATTTCTAAAT-AACTCATAGGGTCTCTCACACTTGAGTTCATACCAGAGAAGTT--------ATAGGATG-----------ATTAACCTCAT-AGGTGCTGTTTATCCCC--AAAGACGACCAGCCATATC-CACGCTCAAACTAAG-------TGTGGATCTCAAAC-AAGTCTTTAGAAATTGTGA-----TTGCGGAATCATGCAATTGTGTGGCTTTTTTTCCCCTT---CTGTATAAGTG-ATTGGGTGGCT i canFam3.chr7 I 196 I 254 a score=212062.000000 s hg38.chr1_KI270759v1_alt 234896 83 + 425601 C----GTTAACTTCACTCTGTTATAGTAA-GGGACTG-CTACAGAGGACACTGAG--CAGGAGGAGAGAAGGAATGATTAGG--CCTCAGAAA s panTro4.chr1 224989783 83 + 228333871 C----GTTAACTTCACTCTGTTATAGTAA-GGGACTG-CTACAGAGGACACTGAG--CAGGAGGAGAGAAGGAATGATTAGG--CCTCAGAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226356260 89 - 229942017 C----GTTAAGTTCACTCTGTTATAGTAAGGGGACTGCCTACAGAGGACACTGAAGCAAGGAGGAGAGAAGGAATGATTTAGGCCCTCAGTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140240368 82 - 143122389 C----GTTAAGTTCACTCTGTTATAGTAA-GGGATGG-CTACAGAGGA-ACTGAG--CAGGAGGAGTGAAGGGATGATTAGG--CCTCAGGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16951423 82 - 229590362 C----GTTCAGTGCAC-CTGTTATGGTAA-GGGACTG-CTATAGAGGACACTGAG--CAGGAGGAGAGAAGGAATGATTACG--CCTCAGTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223714943 82 - 227556264 C----GTTCAGTGCAC-CTGTTATGGTAA-GGGACTG-CTATAGAGGACACTGAG--CAGGAGGAGAGAAGGAATGATTACG--CCTCAGTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16764928 83 - 220367699 C----GTTCAGTGCACTCTGTTATGGTAA-GGGACTG-CTACAGAGGACACTGag--caggaggagagaaggaatgaTTACG--CCTCAGTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82562902 83 + 85787240 C----GTTCAGCGCACTCTGTTATGGTAA-GGGATTG-CTACAGAGGACACTGAG--CAGGAGGAGAGAAGGAATGATTATG--CCTCAGTAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14246175 83 - 49578535 C----GTTAAGTTCACTCTGTTGTGGTAA-GGCACTG-CTACAGAGGACACTGAG--CATGAGGACAGAAGGAATGATTAGG--CCTCAGTAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178821329 64 + 195471971 TATTAATTAAGTTCCTTGTGGTATAGCAA-AGGGCTG-C-----AGGGTACTGAG---------AGTGAAGGCAAGAGTA------------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36393359 254 + 80974532 I a score=70026.000000 s hg38.chr1_KI270759v1_alt 234979 19 + 425601 G-AACGAGGGGTTGTTTAAG s panTro4.chr1 224989866 19 + 228333871 G-AACGAGGGGTTTTTTAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226356349 20 - 229942017 GAAACGAGGGGTTTTTTAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140240450 19 - 143122389 G-AATGAGGGGTTTTTTAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16951505 19 - 229590362 G-AACGAGGGGTTTTTTAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223715025 19 - 227556264 G-AACGAGGGGTTTTTTAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16765011 19 - 220367699 G-AACGAGGggttttttaag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82562985 19 + 85787240 G-AACGAGGGGTTTTTTAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14246258 19 - 49578535 G-AACTAGGGTTTTTTTAAG i calJac3.chr19 C 0 I 375 s mm10.chr1 178821393 18 + 195471971 --ATTAAAGGGCCCTTTAAG i mm10.chr1 C 0 C 0 s canFam3.chr7 36393613 19 + 80974532 G-AACTGGGGGTTCTTGGAG i canFam3.chr7 I 254 C 0 a score=1416174.000000 s hg38.chr1_KI270759v1_alt 234998 408 + 425601 AGAAA-------------------------------------------------------------------------------ACGAAGTAAGCCTAGCAGATCTGATCGTACAAT------CATTTT-CCCCTTATTGTTCCT--------TTTTCCACTCCAGAGCTGCCCAGAAGTTAAATCTGTCTTCTAAAAAGAAGAAACATCGGCCTTCCACTTCTTCCGCTGCCGAACCACCGCTCTTTGCAACCAGCTTCAGTGGGATTCT-GCAGACCTCCCCTCCCCCAGCCC--CACCCTGCCT-GCTGA--GGGCTGTCAACAAGGTGAAGGACACCCCGGGGCTGGGCAAGGTAGG-ACCATCCGCCGTCCCTGCCATTTGCCCAGTGTGCGAGGTTCTGGATCAAGTTTCAGGAGGAAGAAAATGA----GGCCTC-CAAT----GTATTAAAATAAGA---CGTTG-CCAGGGAGA---AAAGG-AGGC-AAG-ATGAAA-TTCATTTGAAAGTC-------------------------------------------------CTG-AAAA-- s panTro4.chr1 224989885 412 + 228333871 AGAAA---------------------------------------------------------------------------GAAAACGAAGTAAGCCTAGCATATCTGATTGTACAAT------CATTTT-CCCCTTATTGTTCCT--------TTTTCCCCTCCAGAGCTGCCCAGAAGTTAAATCTGTCTTCTAAAAAGAAGAAACATCGGCCTTCCACTTCTTCCGCTGCTGAACCACCGCTCTTTGCAACCAGCTTCAGTGGGATTCT-GCAGACCTCCCCTCCCCCAGCCC--CGCCCTGTCT-GCTGA--GGGCTGTCAACAAGGTGAAGGACACCCCGGGGCTCGGCAAGGTAGG-ACCATCCGCCGTCCCTGCCATTTGCCCAGTGTGCGAGGTTCTGGATCAAGTTTCAGGAAGAAGAAAATGA----GGCCTC-CAAT----GTATTAAAATAAGA---CGGTG-CCAGGGAGA---AAAGG-AGGC-AAG-ATGAAA-TTCATTTGAAAGTC-------------------------------------------------CTG-AAAA-- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226356369 435 - 229942017 AAGAA-------------------------------------------------------------------------AGAAGACCGAAGTAAGCC-AGCATATCTGATTGTACAGT------CATTTT-CCCCTTATTGTTCCTTTTTTATGTTTTCCCCTCCAGAGCTGCCCAGAAGTTAAATCTGTCTTCTAAAAAGAAGAAACATCGGCCTTCCACTTCTTCTGCTGCCGAACCACCGCTCTTTGCGACCAGCTTCAGTGGAATTCTCGCAGACCTCCCCTCCCCCAGCCCCGCGCCCTGTCTCGCTGAGCGGGCTGTCAACAAGGTGAAGGACACCCCAGGGCTGGGCAAGGTAGG-ACCATCCGCCGTCCCTGCCATTTGCCTGTTGTGCGAGGTTCTGGATCAAGTTTCAGGAAGAAGAAAATGA----GGGCTCGCAAT----GTATTAAAAATAAAGACCGGTGCCCAGGGAGA---AAAGGCAGGC-AAACGTGAAAGTTCCTTTGAAAGTC-------------------------------------------------CTG-AAAA-- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140240469 495 - 143122389 AGAAAGAAAACATGTACCCTAAAACCTAAAGTATAATAATAAAATTTAAAAAAAGATAGCCCCCCCCAAAAAAAGAGAAAGAAAACGAAGTAAGCCTAGCATATCTGATTGTACAAT------CATTTT-CCCCTTATTGTTCCTTTTTTATGTTTTCCCCTCCAGAGCTGCCCAGAAGTTAAATCTGTCTTCTAAAAAGAAGAAACATCGGCCTTCCACTTCTCCTGCTGCCGAGCCACCGCTCTTTGCCACCAGCTTCAGTGGGATTCT-GCAGACCTCACCTCCCCCAGCCC--CGCCCTGTCT-GCTGA--GGGCTGTCAACAAGGTGAAGGACACCCCGGGGCTGGGCAAGGTAGG-ACCATCCACCATCCCTGCCATTTGCCTGATGTGCGAGGTTCTGGATCAAGTTTCAGGAAGAAGAAAATGA----GGGCTC-CAAT----GAATTAAAATAAGA---CGGTG-CCAGGGAGA---AAAGG-AGGC-AGC-ATGAAA-TTCATTTGCAAGTC-------------------------------------------------CTG-AAAA-- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16951524 417 - 229590362 AGAAA---------------------------------------------------------------------------AAAAACGAAGTAAGCCTAGCATATCTGATTGTACAGT------CATTTT-CCCCTTATTGTTCCTTTCTTATGTTTTCCCCTCCAGAGCTGCCCAGAAGTTAAATCTGTCTTCTAAAAAGAAGAAACGTCGGC---CCACTTCTTCCGCCGCCGAACCACCGCTCTTTGCCACCAGTTTCAGTGGGATCCT-GCAGACCTCCCCTCCCCCAGCCC--CGCCCTGTCT-GCTGA--GGGCTGTCAACAAGGTGAAGGACACCCCGGGGCTGGGCAAGGTAGG-ACCATCCGCCGTCCCTGCCATCTGCCCAGTGTGCGAGGTTCTGGATCAAGTTTCAGGAAGAAGAAAACGA----GGGCTC-CAAT----GTATTAAAATAAGA---CGGCA-CCAGGGAGA---GAAGG-AGGC-AAC-ATGAAA-TTCGTTTCAAAGTC-------------------------------------------------CTG-AAAA-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223715044 417 - 227556264 AGAAA---------------------------------------------------------------------------AAAAACGAAGTAAGCCTAGCATATCTGATTGTACAGT------CATTTT-CCCCTTATTGTTCCTTTCTTATGTTTTCCCCTCCAGAGCTGCCCAGAAGTTAAATCTGTCTTCTAAAAAGAAGAAACGTCGGC---CCACTTCTTCCGCCGCCGAACCACCGCTCTTTGCCACCAGTTTCAGTGGGATCCT-GCAGACCTCCCCTCCCCCAGCCC--CGCCCTGTCT-GCTGA--GGGCTGTCAACAAGGTGAAGGACACCCCGGGGCTGGGCAAGGTAGG-ACCATCCGCCGTCCCTGCCATCTGCCCAGTGTGCGAGGTTCTGGATCAAGTTTCAGGAAGAAGAAAACGA----GGGCTC-CAAT----GTATTAAAATAAGA---CGGCA-CCAGGGAGA---GAAGG-AGGC-AAC-ATGAAA-TTCGTTTCAAAGTC-------------------------------------------------CTG-AAAA-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16765030 417 - 220367699 agaaa---------------------------------------------------------------------------aaaagcgAAGTAAGCCTAGCATATCTGATTGTACAGT------CATTTT-CCCCTTATTGTTCCTTTCTTATGTTTTCCCCTCCAGAGCTGCCCAGAAGTTAAATCTgtcttctaaaaagaagaaacatcgGC---CCACTTCTTCCGCTGCCGAACCACCGCTCTTTGCCACCAGTTTCAGTGGGATTCT-GCagacctcccctcccccagccc--cgcccTGTCT-GCTGA--GGGCTGTCAACAAGGTGAAGGACACCCCGGGGCTGGGCAAGGTAGG-ACCATCCGCCGTCCCTGCCATCTGCCCAGTGTGCGAGGTTCTGGATCAagtttcaggaagaagaaaacgA----GGGCTC-CAAT----GTATTAAAATAAGA---CGGCa-ccagggaga---gaagg-aggc-aac-atgaaa-ttcatttgaaAGTC-------------------------------------------------CTG-AAAA-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82563004 417 + 85787240 AGAAA---------------------------------------------------------------------------AAAAACGAAGTAAGCCTAGCATATCTGATTGTACAGT------CATTTT-CCCCTTATTGTTCCTTTCTTATGTTTTCCCCTCCAGAGCTGCCCAGAAGTTAAATCTGTCTTCTAAAAAGAAGAAACATCGGC---CCACTTCTTCCACTGCCGAACCACCGCTCTTTGCCACCAGTTTCAGTGGGATTCT-GCAGACCTCCCCGCCCCCAGCCC--CGCCCTGTCT-GCTGA--GGGCTGTCAACAAGGTGAAGGACACCCCAGGGCTGGGCAAGGTAGG-ACCATCCGCCGTCCCTGCCGTCTGCCCAGTGTGCGAGGTTCTGGATCAAGTTTCAGGAAGAAGAAAACGA----GGGCTC-CAAT----GTATTAAAATAAGA---CGGCG-CCAGGGAGA---GAAGG-AGGC-AAC-ACAAAA-TTCATTTGAAAGTC-------------------------------------------------CTG-AAAA-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14246652 351 - 49578535 -------------------------------------------------------------------------------agaaaAGGAAGTAGCCCTGGCATACCTGATTATACAAT------AATTTTCCCCCTTACTGCTCCTTTTTTATGTTTTCGCCTCCAGAGCTGCCCAGAAGTTAAATCTGTCTTCTAAAAAGAAGAAACACCGGCCTTCCGCTTCTTCCGCTGCCGAGCCGCCGCTCTTCGCCACCAGCTTCAGTGGGATTCT-GCAAACCTCCCCTCCCCCAGCCC--CGCCCTGTCT-GCTGA--GAGCTGTCAACAAGGTGAAGGACACCCCGGGCCTGGGCAAGGTAGGCACCATCTGCCGTCCCTGCCATTTGCC----------------------------------------------------------------------------A---GGGTG-CCA-GGAGA---AAAGG-AAGT-AAC-ATGAAA-TTCATTTGAACGTC-------------------------------------------------CTGAAAAA-- i calJac3.chr19 I 375 C 0 s mm10.chr1 178821411 459 + 195471971 AGAAA-------------------------------------------------------------------------GGGGGAAAGTGGCCAGCCCAGTGCATCTGATTATACCAC------CTTCTC-CTCCTTACTGTCTCT---------------GTGCAGAGCTGCCCAGAAGTTAAATCTGTCATCTAAGAAGAAGAAACACCGGCCTTCGACTCCATCTGTTGCGGAGGCTCCCCTCTTTGCGACCAGCTTCAGTGGGATCCT-GCAGACCTCTCCTCCCCCAGCCC--CACCCTGTCT-CCTGA--GGGCTGTCAACAAGGTGAAGGACACTCCTGGCATGGGCAAGGTAGGTGCTAGCTGCTGCCTCTGCCATTTGTTCAGTGGGTGTGGCTCTGGG--AAGGTTGGGAAAGAAAAGAACAACCTTGGGCTC-TCAT----TTTCAAAGATGAGG---AGGTA-CCAGGGACA---AAAAG-AGAC-ACA-AGAAAG-TTGGTTTGGAGGTCCCAGCATGCCCACTTTCTGGGATTTTGTTCATCCAGGGTCAACCTCTGACTG-AAAA-- i mm10.chr1 C 0 I 190 s canFam3.chr7 36393632 410 + 80974532 AGAAA---------------------------------------------------------------------------GAAGAGAATATGACTCTGGCATATCTGATCGAACATTGGACCACACCTG-CTCCTTATTGTCGCTTTTCTGCATTTTTCCTTCCAGAGCTGCCCAGAAGTTAAATCTGTCTTCGAAGAAGAAGAAGCATCGACCTTCCACCTCTTGTGCGGCCGAGCCCCCGCTCTTTGCCACCAGCTTCAGCGGCATTCT-GCAGACCTGCCCTCCCCCGGCTC--CTCCCTGTCT-GCTGC--GGGCCGTCAACAAGGTGAAGGACACACCAGGCCTGGGCAAGGTAGG-----------TGCTCTGCCGTT-------------GGAGACGGAATCGAGG---GGAAAGAAGGGAAGCG----GGAGCC-CAGTTTGGTTGTTAAAACCAGA---GGGTG-ACAGCGAGAACGACAGG-AGACGAAG-GTTAAA-TTCACTCGGAAAGA-------------------------------------------------CTC-TCAACC i canFam3.chr7 C 0 C 0 a score=110597.000000 s hg38.chr1_KI270759v1_alt 235406 41 + 425601 TTGTCATGG--TTGCATACACT-AAGTGGTAA-ACTAAGACCTTC s panTro4.chr1 224990297 42 + 228333871 TTGTCATGG-GTTGCATACACT-AAGTAGTAA-ACTAAGACCTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226356804 45 - 229942017 TTGTCATGGGGTTGCATACACTAAAGTAGTAACGCTAAGACCTTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140240964 42 - 143122389 TGGTCATGG-GTTGCATACACT-AAGTAGTAA-ACTAGGACCTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16951941 42 - 229590362 TTGTCATGC-GTTGCATACACT-AAGTAGTAA-ACTAAGACATGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223715461 42 - 227556264 TTGTCATGC-ATTGCATACACT-AAGTAGTAA-ACTAAGACATGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16765447 42 - 220367699 TTGTCATGC-GTTGCATACACT-AAGTAGTAA-ACTAAGACATGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82563421 42 + 85787240 TTGTCATGC-GTTGCATACACT-AAGTAGTAA-ACTAAGACATGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14247003 42 - 49578535 TTGTCGTTG-GTTGCATATACT-AAGCAGTAA-ACTAAGCCGTTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36394042 41 + 80974532 -TTTCTTTA-GTTACATGCATT-GCATAGAAA-ATGAAGGCATTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178821870 190 + 195471971 I a score=418607.000000 s hg38.chr1_KI270759v1_alt 235447 126 + 425601 AGATTGTAA--------------------------------GAGAT-CTGATTTGCTTTTGGTGGGAA--AAATCAGCT----TTGCATTGTTTGACAGAATCGTAGCCATTTAAAGAAAAGACACAAAGGCACAAAATATCG-AGGCAGGGGCAGGAGACCGAGG s panTro4.chr1 224990339 126 + 228333871 AGATTGTAA--------------------------------GAGAT-CTGATTTGCTTTTGGTGGGAA--AAATCAGCT----TTGCATTGTTTGACAGAATCGTAGCCATTTAAAGAAAAGACACAAAGGCACAAAATATCG-AGGCAGGGGCAGGAGACCGAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226356849 127 - 229942017 AAACTGTAA--------------------------------GAGATACTGATTTGCTTTTGGTGGGAA--AAATCAGCT----TTGCATTGTTTGACAGAATTGTAGCCATTTAAAGAAAAGACACAAAGGCACAAAATATCG-AGGCGGGGGCAGGAGACCGAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140241006 126 - 143122389 AAATTGTAA--------------------------------GAGAT-CTGATTTGCTTTTGGTGGGAA--AAATCAGCT----TTGCATTGTTTGACAGAATCGTGGCCATTTAAAGAAAAGACACAAAGGCAGGAAATACCG-AGGCAGGGGTAGGAGACCGAGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16951983 126 - 229590362 AAATTGTAA--------------------------------GAGAA-CTGATTTGCTTTTGGTGGGAA--AAATAAGCT----TGGCATTGTTTGACAGAATCATAGCTATTTAAAGAAAAGACATAAAGGCACAAAGTATCG-AGGCAGGGGCAGGAGACCGAGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223715503 126 - 227556264 AAATTGTAA--------------------------------GAGAA-CTGATTTGCTTTTGGTGGGAA--AAATAAGCT----TGGCATTGTTTGACAGAATCATAGCTATTTAAAGAAAAGACATAAAGGCACAAAGTATCG-AGGCAGGGGCAGGAGACCGAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16765489 126 - 220367699 AAATTGTAA--------------------------------GAGAA-CTGATTTGCTTTTGGTGGGAA--AAATAAGCT----TGGCATTGTTTGACAGAATCATAGCCATTTAAAGAAAAGACATAAAGGCACAAAGTATcg-aggcaggggcaggagcccGAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82563463 126 + 85787240 AAATAGTAA--------------------------------GAGAA-CTGATTTGCTTTTGGTGGGAA--AAATAAGCT----TGGCATTGTTTGACAGAATCATAGCCATTTAAAGAAAAGACATAAAGGCACAAAGTATCG-AGGCAGGGGCAGGAGACCGAGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14247045 119 - 49578535 AAACTGTAA--------------------------------GAGGT-CTGATTTGCTTATGGTGGGAA--AAAACAGCTGTGCCTGCCTTGTTTGACAGAGTTGTAGTCATTTAAAGA--------AAAGGCACAAAAGATCG-AGGCAGAGGCGGCAGACCG--- i calJac3.chr19 C 0 C 0 s mm10.chr1 178822060 154 + 195471971 AGACTGTAAAGTCTTCTTGGTCTTGCAAGTGCATTAAGTTGGGGAT-CTGATTTGATTTGGGTGGGGAGGGAAATAGCT----TTGCATTGTTGAGCAGGACCATAGACACTTCAA------ACTTAGAGATGCAAAAGCCAG-AAGCAGAGGCCGGAGGCCCAGG i mm10.chr1 I 190 C 0 s canFam3.chr7 36394083 114 + 80974532 AGATGATTG--------------------------------GAGAT-GTGATTGGGTTTGGGCAGGTA--AAAACAGCT----GTGTGCTGTTTGACAGAACTGTAACCATTTGAAGACAAGACCCAAAGACAGAAAAGACAGTAGGCAGAGG------------- i canFam3.chr7 C 0 C 0 a score=403163.000000 s hg38.chr1_KI270759v1_alt 235573 156 + 425601 GAGGCCACAGCACAAGGTACAGAAATGAGACGTAATGAGGCCTCATAATTTCCCTGTGACACTTTCGAGTTTTTGCCTCCTCTTCAGAGAAATCCTGACTTCTGC-TTTGAAGCAGCCCACTGAGGGGA-TTGTGAGGAACGC---TGCAGTCTTGCCTTT s panTro4.chr1 224990465 156 + 228333871 GAGGCCACAGCACAAGGTACAGAAATGAGACGTAATGAGGCCTCATAATTTCCCTGTGACACTTTCGAGTTTTTGCCTCCTCTTCAGAGAAATCCTGACTTCTGC-TTTGAACCAGCCCACCGAGGGGA-TTGTGAGGAATGC---TGCAGTCTTGCCTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226356976 159 - 229942017 GAAGCCACAGTACAAGGTACAGAAATGAGACGTAATGAGGCCTCATAATTTCTCTGTGACACTTTCGAGTTTTTTCCTCCTCTTCAGATAAATCCTGACTTGTGC-TTTGAACCAGACCACCGAGGGGATTTGTGAGGAA-GCGTTTGCAGTCTTGCCTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140241132 158 - 143122389 GAAGCCACAGTACAAGGTACAAAAATGAGACGTAATGAGGCCTCATAATTTCCCTGTGACACTTTCGGGTTTTTCCCTCCTCTTCAGAGAAATCCTGATTTGTGC-TTTGAACCAGACCGCCGAGGGGATTTGTGAGGA--GCGTTTGCAGTTATGCTTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16952109 158 - 229590362 GAAGCCACAGTATAAGGTACAGAAATGAGATGTAACAAGGCGTCGTAATTTCCCTGTGACACTTTTGGGTTTTTCCTTCCCCTTCAGAGAAATCCTGACTCCTGC-TTTGAACCAGAACACTGAGGGGATTCGTGAGGA--GCGTTTGCAGTCATGCCTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223715629 158 - 227556264 GAAGCCACAGTATAAGGTACAGAAATGAGATGTAACAAGGCGTCGTAATTTCCCTGTGACACTTTTGGGTTTTTCCTTCCCCTTCAGAGAAATCCCGACTCCTGC-TTTGAACCAGAACACTGAGGGGATTCGTGAGGA--GCGTTTGCAGTCATGCCTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16765615 158 - 220367699 GAAGCCACAGTACAAGGTACAGAAATGAGATGTAACAAGGCCTCGTAATTTCCCTGTGACACTTTTGGgtttttccttccccttcagAGAAATCCCGACTCCTGC-TTTGAACCAGAACACCAAGGGGATTCGTGAGGA--GCATTTGCAATCATGCCTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82563589 158 + 85787240 GAAGCCACAGTACAAGGTACAGAAATGAGATGTAACAAGGCCTCGTAATTTCCCTGTGACACTTTTGGGATTTTCCTTCCCCTTCAGAGAAATCCCGACTTCTGC-TTTGAACCAGAACGCCGAGGGGATTCGTGAGGA--GCGTTTGCAGTCATGCCTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14247164 136 - 49578535 --------------AGGTAGAGAAATGAGATGTCACGATGCCTCGCAATTTCCCTGTGACACTTTTG-GTCTCTTCCTCGCCTTCAGAGACATGGTGACTC-------TGAACTAGACCGCCAAGGGGATTTG-GAGGA--ACGTTTGCCGTCATGCCTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178822214 138 + 195471971 GAAAACACCACAT-------GGAAGCAAGATGAAGATATTC--------TTTCCTGTGGTGCTTCTGAGTCCTT--CTTCCCTTCAAATAAATGGTGACTTCCGCATCTGCACCAGATCACTGGTGTGAATTCTGTAGA--GTGGTT-CAG---TAGCTTT i mm10.chr1 C 0 C 0 e canFam3.chr7 36394197 0 + 80974532 C a score=1899505.000000 s hg38.chr1_KI270759v1_alt 235729 637 + 425601 CTAGCCAACAAGTGCGATTTCGAATTGTTACAAATGCTCAGGAAGAGATGTAGGATCGTGCTTACAAGCTGTTGCTCAGCTACACTTGGGATCACTTTATTTTTAAATGTCATTTCTAAATTCTTTCTCCCTTCCGAGGAAAGCGTTTGGGTGAAGTAACTTACGGTTTA-CTCATCATT-GGTG--AATAAGCCAGGGCTCATACAAACATGTAGTGAAAGAAAGACGTGGCGGTTTAA-TTTTTTATTTTTATCAAAAGTAGGAGTGGTGCACACGACCTC-ACTGGTCCTTTACAGACTTATCGTGACTC-CGGCCCTGGGCTTCATTTGGCCGCCGTT--GCTAGTCTTGCTGAAGCT-CCGGAGCAACTACTAAACTGT-GGGGATTTAGATTTTACTTGTTCAGTTCGCAGACTGCCAGTCCCCTGGGTACCCAAACACGGTCATGGCTGGGTTTCTGGGC-CTCAGAAGGCCT--CTGTCTCTCTGGAGTCTCCCCTTGCACCCTCTACCCTCTCTTCTT--TTCACCTTTCCCAGTTTCTCCCGTGTCC-TTCCATGCTCTC------CCACCCT----CAATCTCACCACCTCGTTGGGAAGGTATTAACTTCATGTGGTACTTTT-CCCAAGAAGAGTTTAAATTTTAAGATTAC s panTro4.chr1 224990621 637 + 228333871 CTAGCCAACAAGTGCGATTTCGAATTGTTACAAATGCTCAGGAAGAGATGTAGGATCGTGCTTACAAGCTGTTGCTCAGCTACACTTGGGATCACTTTATTTTTAAATGTCATTTCTAAATTCTTTCTCCCTTCCGAGAAAAGCGTTTGGGTGAAGTAACTTACGGTTTA-CTCATCATT-GGTG--AATAAGCCAGGGCTTATACAAACATGTAGTGAAAGAAAGACGTGGCGGTTTAA-TTTTTTATTTTTATCAAAAGTAGGAGTGGTGCACACGACCTC-ACTGCTCCTTTACAGACTTAACGTGACTC-CGGCCCTGGGCTTCATTTGGCCGGCGTT--GCTAGTCTTGCTGAAGCT-CCGGAGCAACTACTAAACTGT-GCGGATTTAGATTTTACTTGTTCAGTTCGCAGACTGCCAGTCCCCTGGGTACCCAAACACGGTCATGCCTGGGTTTCTGGGC-CTCAGAAGGCCT--CTGTCTCTCTGGAGTCTCCCCTTACACACTCTACCCTCTCTTCTT--TTCACCTTTCCCAGTTTCTCCCGTGTCC-TTCCATGCTCTC------CCACCCT----CAATCTCACCACCTTGTTGGGAAGGTATTAACTTCATGTGGTACTTTT-CCCAAGAAGAGTTTAAATTTCAAGATTAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226357135 648 - 229942017 CTAGCCAACAAGTGCGATTTCGAATTGTTACAGATGCATAGGAAGAGGCGTAGGATCGTGCTTACAAGCTGTTGCTCAGCTACACTTGGGACAACTTTATTTTTAAATGTCATTTCTAAATTCTTTCTCCCTTCCGAGAAAAGCATTTGGGTGAAGTAACTTACAGTTTA-CTCATCATT-GGTG--AATAAGCCAGGGCTTATACAAACATGTAGTGAAAGAAAGAGGTGGCGGTTTTA-TTTTTTATTTTTATCACAAGTAGGAGTGGTGCACACGACCTCGACTGGTCCTTTGCAGACTTAACGTGACTCGCAGCCCTGGGCTTCATTTGGCCGGTGTT--GCTAGTCTTGCTGAAGCTCCCGGAGCAACTACTAAACTGTGGCGGATTGAAATTTTACTTGTTCAGATCGCAGACTGCCAGTCCCCTGGGTACCCAAACATGGTCATGCCTGGGTTTCTGGGC-CTCAGAAGGCCT--CTGTCTCTCTGGAGTCTCCCCTTACACCCTCTACCCTCTCTTCTT--TTCTCCTTTCCCAGTTTCTCCCGTGTCCTTTCCATGCTCTC----CTCTACCCTTATCCAATCTCACCACCTTGTTGGGAAGGTATTAACTTCTTGTGGTACTTTT-CCCAAGAAGAGTTTAAATTTCAAGATTAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140241290 638 - 143122389 CTAGCCAACAAGTGCGATTTCGAATTGTTACAAATGCTTAGGAAGAGATGTAGGATCGTGCTTACAAGCTGTTGCTCAGCTACACTTGGGCTAACTTTGTTTTTAAATGTCATTTCTAAATTCTTTCTCCCTTCGGAGAAAAGCGTTTGGGTGAAGTAACTTACGGTTTA-CTCATCATT-GGTG--AATAAGCCAGGGCTTATACAAACATGTAGTGAAAGAAAGAGGTGGCAGTTTTATTTTTTTGTTTTTATCAAAAGTAGGAATGGTGCACACGACCTC-ACTGGTCCTTTGCAGACTTAACCTGACTC-CAGCCCCGGGCTTCGTTTGGCTGGAGGC--GCTAGTCTTGCCGAAGCT-CTGGAGCAACTACTAAACTGT-GCGGATTGAGATTTTACTTGCTCAGATCGCAGACTGCCAGTCCCCTGGGTACCCACACATGGTCGTGCCTGGGTTTCTGGGC-CTCAGAAGGCCT--CTGTCTCTCTGGAGTCTTCCCTTACACCCTCTACCCTCTCTTCTT--TTCTCCTTTCCCAGTTTCTCCCATGTCC-TTCCATGCTCTC------CCACCCT----CAATCTCACCACCTTGTTGGGAAGGTATTAACTTCATGTGGCACTTTT-CCCAAGAAGAGTTTAAATTTCAAGATTAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16952267 638 - 229590362 CTAGCCAACAAGGGCAATTTCGAATTGTTACAAATGCTTAGAAAGAGATGTAGGATCATGCTTACAAGCTATTGCTCAGCTACATTTGGGATATATTTATTTTTAAATGTCATTTCTGAATTCTTTCTCCCTTCCGAGGAAAGCGTTTGGGTGAAGTAACTTATGGTTTA-CTCATCATT-GGTG--AATAAGCCGGGGCTTATACAAACATGTAGTGAAAGAAAGAGGTGGCGGTTTTA-TTTTCCATTTTTATCAAAAATAGGAGTGGCGCACACGACCTC-ACTGGTCCTTTGCAGACTTAACGTGACTC-CGGCCCTGGGCTGCATTTGGCCGGAGTT--GCTAGTCTTGCTGAAGCT-CCAGAGCAACTACTAAACTGT-GCGGACTGAGATTCTACCTGTTCAGATTGCAGACTGCCAGTCCCCTGGGTTCCCAAACACGGTCGTGCCTGGGTCTCCAGGC-ATCAGAAGGCCT--GTGTCTCTCTGGAGTCTCCCCTTACAACCTCTACCCTCTCTTCTT--TTCTCCTTCCCCAGTTTCTCCCGTGTCC-TTCCATCCTCTC------CCACCCT----CAATCTCACCACCTTGTTGGGAAGGTATTAACTTCATGTGGTACTTTTCCCCAAGAAGAGTTTAAATGTCAAGATTAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223715787 638 - 227556264 CTAGCCAACAAGGGCAATTTCGAATTGTTACAAATGCTTAGAAAGAGATGTAGGATCATGCTTACAAGCTATTGCTCAGCTACATTTGGGATATCTTTATTTTTAAATGTCATTTCTAAATTCTTTCTCCCTTCCGAGGAAAGCGTTTGGGTGAAGTAACTTATGGTTTA-CTCATCATT-GGTG--AATAAGCCGGGGCTTATACAAACATGTAGTGAAAGAAAGAGGTGGCGGTTTTA-TTTTCCATTTTTATCAAAAATAGGAGTGGCGCACACGACCTC-ACTGGTCCTTTGCAGACTTAACGTGACTC-CGGCCCTGGGCTGCATTTGGCCGGAGTT--GCTAGTCTTGCTGAAGCT-CCAGAGCAACTACTAAACTGT-GCGGACTGAGATTCTACCTGTTCAGATTGCAGACTGCCAGTCCCCTGGGTTCCCAAACACGGTCGTGCCTGGGTCTCCAGGC-ATCAGAAGGCCT--GTGTCTCTCTGGAGTCTCCCCTTACAACCTCTACCCTCTCTTCTT--TTCTCCTTCCCCAGTTTCTCCCGTGTCC-TTCCATCCTCTC------CCACCCT----CAATCTCCCCACCTTGTTGGGAAGGTATTAACTTCATGTGGTACTTTTCCCCAAGAAGAGTTTAAATGTCAAGATTAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16765773 638 - 220367699 CTAGCCAACAAGGGCAATTTCGAATTGTTACAAATGCTTAGAAAGAGATGTAGGATCATGCTTACAAGCCATTGCTCAGCTACATTTgggatatctttatttttaaatgtcatttctaAATTCTTTCTCCCTTCCGAGGAAAGCGTTTGGGTGAAGTAACTTATGGTTTA-CTCATCACT-GGTG--AATACGCCGCGGCTTATACAAACATGTAGTGAAAGAAAGAGGTGGcggtttta-ttttccatttttatcaaaAATAGGAGTGGCGCACACGACCCC-ACTGGTCCTTTGCAGACTTAGCGTGACTC-CGGCCCTGGGCTGCATTTGGCTGGAGTT--GCTAGTCTTGCTGAAGCT-CCAGAGCAACTACTAAACTGT-GCGGACTGAGATTCTACCTGTTCAGATCGCAGACTGCCAGTCCCCTGGGTTCCCAAACACGGTCCTGCCTGGGTCTCTGGGC-ATCAGAAGGCCT--GTGTCTCTCTGGAATCTCCCCTTACAACCTCtaccctctcttctt--ttctccttccccagtTTCTCCCGTGTCC-TTCCATCCTCTC------CCACCCT----CAATCTTACCACCTTGTTGGGAAGGTATTAACTTCATGTGGTACTTTTCCCCAAGAAGAGTTTAAATGTCAAGATTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82563747 638 + 85787240 CTAGCCAACAAGGGCAATTTCGAATTGTTACAAATGCTTAGAAAGAGATGTAGGATCATGCTTACAAGCCATTGCTCAGCTACATTTGGGATATCTTTATTTTTAAATGTCATTTCTAAATTCTTTCTCCCTTCCGAGGAAAGCGTTTGGGTGAAGTAACTTATGGTTTA-CTCATCACT-GGTG--AATAAGCCGGGGCTTATACAAACATGTAGTGAAAGAAAGAGGTGGCGGTTTTA-TTTTCCATTTTTATCAAAAATAGGAGTGGCGCACACGACCTC-ACTGGTCCTTTGCAGACTTAGTGTGACTC-CGGCCCTGGGCTGCGTTTGGCCGGAGTT--GCTAGTCTTGCTGAAGCT-CCAGAGCAACTACTAAACTGT-GCGGACTGAGATTCTACCTGTTCAGATCGCAGACTGCCAGTCCCCTGGGTACCCAAACACGGTTGTGCCTGGGTCTCTGGGC-ATCAGAAGGCCT--CTGTCTCTCTGGAGTCTCCCCTTACAACCTCTACCCTCTCTTCTT--TTCTCCTTCCCCAGTTTCTCCCGTGTCC-TTCCATCCTCTC------CCACCCT----CAATCTCACCACCTTGTTGGGAAGGTATTATCTTCATGTGGTACTTTTCCCCAAGAAGAGTTTAAATGTCAAGATTAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14247300 582 - 49578535 CTAGCCAGGAAGTGCAGTTTCAAATTGTTACAAATACTTAGGAAGAGATGTAGGACCACGTTTGCAAGATGTTGCTCAGCTACACTTGGGATGG-TTTACTTTTAAGTGTCATTTCTAAATTCTTTCTCCCTTCTGAGCGAAGCGTGTG--------------------------------AGTG--AATAAGCTGGGACTTATACAGACATCGAGCTAAAGAAAGAGGTGGCGGGT----TTTTAGGTTTTTATCTCAAGTGTGAGTGGTGCACACGCCCTC-ACTG--CCTTTGCGGACTTCACGTGACTC-CGACCCTGAGCTTCGTTTTG-TGGAGTT--GCCAGTCTTGCTAAAG-----GGGGCACCGGCTAACCTGC-GCAGACTGGGATTTTGCTTGTTCAGACCACTAACTGCCAGTCCCCTGGGTACCGAAACATGGTCGCGCCTGGGTTGCTGGTC-CTCAGAAGGCCTCACAGTCTCTCTGGAGTTTTCCCTTACACCCTCTGCCCGCTCTTCCT--TTTTCTTTTC-----TTCTT---------TCCCAGCTTCTC------ACG---T----TAATCTCACCACCTTGTTGGAAAGGTATTGACTTCATGTGGTTCTTTTCTCCAAGAAGAGTTT-AATTTCAAGGTTCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178822352 558 + 195471971 CCAGCCAAGAAATGCAGTTTGAAGTTGTCACAAGGACTTAGAAAGACGTAAGGGAAGTCTGTTACAGGATATTACTGGGACACATTTATGATAACTTTATTTATAAATGTCAACTCTTAACTCTTTCTCTC--CCAAGATAAAGGTCTGCCTGAAGTAATTTACAGCCTA-ATCTTCGGT-GGGGGAAATAAGTTGGGGCTTAGAAAAACATGTAGCTGGAGAGATAAGTGAC---TCTA-TTCATTACTTTCGTCAG----GGTACAGATACACA-GAACGC-A------------AGACCTGACGT------TGGCCTTGGGTCTTGTTT---CAGAACCCAGCTGGTCATGCTGAAGAA----------------AGCAGA-GCCAGGTGTATTTTT------------------------GTCCTTTTGACATCAAAACTTGGTT-TACCCCAGTTTATAGTC-TCCAGATGACCA--TGTTCCCTCCAGAA--AGACCATGCATCCTGTGCCTGATCTCCTTCATTCTCTTCTTACTGTTTCTCCC----CT-CTCCATTCT---------GTACCCC----TAGTACCACCATCTCAGAGGGAAGCCCTTA---TGTCATAATGCTTTC-CCCCCAAAGTAAACAGATTTTAAAAT--- i mm10.chr1 C 0 C 0 s canFam3.chr7 36394197 558 + 80974532 CTGGCCAACAGG------------------CCAATG-TTATTAGGAGATGCGG---------------------CTCAGTTGGGTTTGGGGTAACTTTGTTTTCAGG-GTCACTCCCAAACTCTGC-------GCTGACATGGTATCTGGGTGAAGTCACTGCGGCTCTAGCTCTCCACTCAGGA--AATAAGCTGAGACGTATAAAAACATTTAGCTCCAGAAAG--GTGGCTGTTGTGTCTCTTTATTTTCTTCGGAAGTAGGA-TGGGGCACACCACCTC-GCCAGTGCCTTGCCGACTTGATGTGAT---CTGTCCGGGGTTCTTTCTGG--AAAGTT--GCAGGTTGGGCTGAGG-----GGGGCAGCTGGTCCACTAT-GAGGACCCAGCTCTTCCT-------GTCACCGATTCCCTTTCCCCTTGACCCTCAGACTTGGCTGT-CCCAGGTTTCTAGTCTCCCTGTAACTCA--GAGTCCTTCTGGAGTTTG-----GGGCTCTCCACTCCATCTTCTC--C------------GTTTCTC-TGCTTCC-TCCCATAGTCTCTGCCCCATGCCCC----CAGTTTCACCACCCCATTGGGAAAGTATCA---TGCTAtgttaccctt-cccaat-ggcatttaaactttaagatcat i canFam3.chr7 C 0 C 0 a score=48893.000000 s hg38.chr1_KI270759v1_alt 236366 17 + 425601 ATGGAATAggtcaggca s panTro4.chr1 224991258 17 + 228333871 ATGGAATAggtcaggca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226357783 17 - 229942017 ATTGAATAggtcaggca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140241928 17 - 143122389 ATGGAATAggtcaggca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16952905 17 - 229590362 ATTGAATAGTTcgggca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223716425 17 - 227556264 ATTGAATAGTTcgggca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16766411 17 - 220367699 ATTGAATAgttcgggca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82564385 17 + 85787240 ATTGAATAGTTcgggca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14247882 17 - 49578535 ATTGAATAggtcggaca i calJac3.chr19 C 0 C 0 s mm10.chr1 178822910 11 + 195471971 ------GAGGTCAGATA i mm10.chr1 C 0 C 0 e canFam3.chr7 36394755 0 + 80974532 C a score=378821.000000 s hg38.chr1_KI270759v1_alt 236383 127 + 425601 ctgtggctcacacctgtaatcccagagctttgggaggccacagcaagagaagcacttgaggctaggagttcaagaccagcctgggt-aacatagcaagaccctgtctcta-c-aaaaaatttaaaagtca s panTro4.chr1 224991275 127 + 228333871 ctgtggctcacacctgtaatcccagagctttgggaggccacagcaagagaagcacttgaggctaggagttcaagaccagcctgggt-aacatagcaagaccctgtctcta-c-aaaaaatttaaaagtct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226357800 129 - 229942017 ctgtggctcacacctgtaatcccagagctttgggaggccacagcaagagaagcacttgaggccagaagttcgagaccagcctgggtaaacatagcaagaccctgtctctacc-aaaaaatttaaaagtca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140241945 127 - 143122389 ctgtggctcacacctgtaattccagagctttgggaggccgcagcaagaggagcacttgaggccaggagttcgagaccagcctgggt-aacatagcaagaccctgtctcta-c-ataaaatttaaaagtca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16952922 128 - 229590362 cagtggctcccacctgtaatcccagagctttgggaggccacagcaagaggagcagttgaggccaggagttcgagaccagcctgggt-aacatagcaagaccctgtcttta-caaaaacatttaaaagtca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223716442 128 - 227556264 cagtggctcccacctgtaatcccagagctttgggaggccacagcaagaggagcagttgaggccaggagttcgagaccagcctgggt-aacatagcaagaccctgtcttta-caaaaacatttaaaagtca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16766428 127 - 220367699 cagtggctcccacctgtaatcccagagctttgggaggccacagcaagaggagcacttgaggccaggagttcgagaccagcctgggt-aacgtagcaagaccctgtctcta-c-aaaatatttaaaagtca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82564402 127 + 85787240 cagtggctcccacctgtaatcccagagctttgggaggccacagcaagaggagcagttgaggccaggagttcgagaccagcctgggt-aacatagcaagaccctgtcttta-c-aaaacatttaaaagtca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14247899 127 - 49578535 tagtggc-cacacctgtaatcccagggctctgggaggccacagcaagaggagcacttgaggccaggagttcgagaccagcctgagt-aacatagcaagaccctgtctcta-caaaacaatttaaaagcca i calJac3.chr19 C 0 C 0 e mm10.chr1 178822921 0 + 195471971 C e canFam3.chr7 36394755 0 + 80974532 C a score=28860.000000 s hg38.chr1_KI270759v1_alt 236510 8 + 425601 gctgggca s panTro4.chr1 224991402 8 + 228333871 gctgggca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226357929 8 - 229942017 gccgagca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140242072 8 - 143122389 gctgggca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16953050 8 - 229590362 gccgggca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223716570 8 - 227556264 gccgggca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16766555 8 - 220367699 gccgggca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82564529 8 + 85787240 gccgggca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14248026 8 - 49578535 gccaggca i calJac3.chr19 C 0 C 0 s canFam3.chr7 36394755 8 + 80974532 gttgggca i canFam3.chr7 C 0 C 0 e mm10.chr1 178822921 0 + 195471971 C a score=240975.000000 s hg38.chr1_KI270759v1_alt 236518 82 + 425601 c--agtggcagat-gcctgtagtcccagctactcaggaggctaaggagggaggatcacttgagcccagg-agttagaggctgcagt s panTro4.chr1 224991410 82 + 228333871 c--agtggcagat-gcctgtagtcccagctactcaggaggctaagaagggaggatcacttgagcccagg-agttagaggctgcagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226357937 86 - 229942017 ccagttggcagataacctgtagtcccagctactcaggaggctaaggagggaggatcacgtgagcccaggaagtttgaggctgcagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140242080 82 - 143122389 c--agtggcagat-gcctgtagtcccagctactcaggaggctaacaagggagggtcacttgagcccagg-cgtttgaggctgcagt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16953058 82 - 229590362 c--agtggcagat-gcctatagtcccggctactcaggaggctaaggagggaggatcactcaagcccagg-agtttgaggctgcagt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223716578 82 - 227556264 c--agtggcagat-gcctatagtcccggctactcaggaggctaaggagggaggatcactcaagcccagg-agtttgaggctgcagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16766563 82 - 220367699 c--agtggcagat-gcctgtagtcccggctactcaggaggctaaggagggaggatcactcgagcccagg-agtttgaggctgcagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82564537 82 + 85787240 c--agtggcagaa-gcctgtagtcccggctactcaggaggctaaggagggaggatcactcaagcccagg-agtttgaggctgcagt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14248034 82 - 49578535 g--agcggcagat-gcctatagtcccagctactcaggaggctagggagagaggagcacttgagcccagg-agtttgaggctgcagt i calJac3.chr19 C 0 C 0 e mm10.chr1 178822921 0 + 195471971 C e canFam3.chr7 36394763 0 + 80974532 C a score=137968.000000 s hg38.chr1_KI270759v1_alt 236600 44 + 425601 gagcaatgatcgtgccactgcactctag-cctgggccacagagtg s panTro4.chr1 224991492 44 + 228333871 gagcaatgatcgtgccactgcactccag-cctgggccacagagtg i panTro4.chr1 C 0 M 760 s ponAbe2.chr1 226358023 45 - 229942017 gagcaatgatcatgccactgcactccagccctgggccacagagtg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140242162 44 - 143122389 gagcaatgatcgtgccactgcactccag-cctgggccacagagtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16953140 44 - 229590362 gagcaatgatcatgccactgcactccag-cctgggtcacagagtg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223716660 44 - 227556264 gagcaatgatcatgccactgcactccag-cctgggtcacagagtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16766645 44 - 220367699 gagcaatgatcatgccactgcactccag-cctgggtcacagagtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82564619 44 + 85787240 gagcaatgatcatgccactgcactccag-cctgggtcacagagtg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14248116 44 - 49578535 gagcaatgatcgtgccactgcattccag-cctgggccacagagtg i calJac3.chr19 C 0 C 0 s mm10.chr1 178822921 15 + 195471971 GAGCAGTGGT------------------------------GAGTG i mm10.chr1 C 0 C 0 e canFam3.chr7 36394763 0 + 80974532 C a score=24075.000000 s hg38.chr1_KI270759v1_alt 236644 12 + 425601 TCTCTATTTTTT s ponAbe2.chr1 226358068 12 - 229942017 TCTCTATTTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140242206 12 - 143122389 tctctattttta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16953184 12 - 229590362 TCTCtatttttt i rheMac3.chr1 C 0 I 159 s macFas5.chr1 223716704 12 - 227556264 TCTCtatttttt i macFas5.chr1 C 0 I 297 s papAnu2.chr1 16766689 12 - 220367699 tctctatgtttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82564663 12 + 85787240 TCTCTATTTTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14248160 12 - 49578535 TCTCTATTTTTT i calJac3.chr19 C 0 I 2 s mm10.chr1 178822936 2 + 195471971 --TC-------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36394763 0 + 80974532 C e panTro4.chr1 224991536 760 + 228333871 M a score=1179.000000 s hg38.chr1_KI270759v1_alt 236656 1 + 425601 G s ponAbe2.chr1 226358080 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140242218 1 - 143122389 a i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223717013 1 - 227556264 A i macFas5.chr1 I 297 C 0 s papAnu2.chr1 16766701 1 - 220367699 a i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82564675 1 + 85787240 A i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14248174 1 - 49578535 A i calJac3.chr19 I 2 C 0 e mm10.chr1 178822938 0 + 195471971 C e canFam3.chr7 36394763 0 + 80974532 C e rheMac3.chr1 16953196 159 - 229590362 I e panTro4.chr1 224991536 760 + 228333871 M a score=39683.000000 s hg38.chr1_KI270759v1_alt 236657 17 + 425601 AAAACTTACATTGAACA s ponAbe2.chr1 226358081 17 - 229942017 AAAACTTACATTGAACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140242219 17 - 143122389 aaaaCTTACATTGAACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16953355 17 - 229590362 AAAACTTACATTGAACA i rheMac3.chr1 I 159 C 0 s macFas5.chr1 223717014 17 - 227556264 AAAACTTACATTGAACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16766702 17 - 220367699 aaaacttacattGAACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82564676 17 + 85787240 AACACTTGCATTGAACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14248175 17 - 49578535 AAAGCATACATTGAACA i calJac3.chr19 C 0 C 0 e mm10.chr1 178822938 0 + 195471971 C e canFam3.chr7 36394763 0 + 80974532 C e panTro4.chr1 224991536 760 + 228333871 M a score=242308.000000 s hg38.chr1_KI270759v1_alt 236674 112 + 425601 GAGCAGTGCCTCCTCTGAGGGGAAGCATCCAGTCCTGGAGCTTTCCTTGGT-GGTGGGCAGGGCAGACAGTTTTCAGCT---GAGGGCTTTCCCAGGCCCAGCAGCAAAGTAAGAC s ponAbe2.chr1 226358098 113 - 229942017 GAGCAATGCTTCCTCTGATGGGAAGCATCCAGTCCTGGAGCTTTCCTTGGTGGGTGGGAAGGACAGATAGTTTTCAGCT---GAGGGCTTTCCCAGGCCCAGCAGTAAAGTAAGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140242236 112 - 143122389 GAGCAATGCTTCCTCTGATGGGAAGCACCCAGTCCTGGAGCTTTCCTTGGT-GGTGGACCGGGCAGATAGTTTTCAGCT---GAGGGCTTTCCCAGGCCCAGCAGTAAAGTAAGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16953372 110 - 229590362 GAGCAGTCCTTCCTCTGGCGGGAAGCATCCAGTCCCAGAG-TTTCCATGGC-GGTGGGCAGGGCAGATGGTTTTC-GCT---GAGGGCTTTCCCAGGCCCCGCGGTAAAGAAACAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223717031 110 - 227556264 GAGCAGTCCTTCCTCTGGCGGGAAGCATCCAGTCCCAGAG-TTTCCATGGC-GGTGGGCAGGGCAGATGGTTTTC-GCT---GAGGGCTTTCCCAGGCCCCGCGGTAAAGAAACAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16766719 110 - 220367699 GAGCAGTCCTTCCTCTGACGGGAAGCATCCAGTCGCAGAG-TTTCCATGGC-GGTGGGCAGGGCAGATGGTTTTC-ACT---GAGGGCTTTCCCAGGCCCCGCGGTAAAGAAACAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82564693 112 + 85787240 GAGCAGTCCTTCCTCTGACGGGAAGCATCCAGTCCCAGAGTTTTCCGTGGT-GCGGGGCAGGGCAGATGGTTTTCAGCT---GAGGGCTTTCCCAGGCCCCGCGGTAAAGAAAGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14248192 110 - 49578535 GAGCGATGGTGCCTCTGATGGGAAGCGTCCAGTCCTGGCATTCTTCGTGGC-GGTGGGCAGGGCAAATA-TTTACAGCT---GACAGTTTTCCCAGGCCCGGCAGGGAAGTGAGG- i calJac3.chr19 C 0 C 0 s mm10.chr1 178822938 94 + 195471971 -----------------GTGGACAGCCTCCAGACTTAAAATTTTCCATGGT-GTTTCTCAG--CAGATGAGTGTCAGCTAAAAAAAACTTT--CAAGGCCAGTGGTAAAGAAAGAC i mm10.chr1 C 0 C 0 s canFam3.chr7 36394763 109 + 80974532 gagcattgcttactccaatggagagtatccagtcttggaatgttcc--ggc-atgtggcaggGTAGGTAGCTGTTAGCT---GATGGTTTTCCCATCCCCAAAGGAAAGCAGGGA- i canFam3.chr7 C 0 C 0 e panTro4.chr1 224991536 760 + 228333871 M a score=1681334.000000 s hg38.chr1_KI270759v1_alt 236786 530 + 425601 CCAAGGAGgcagggaagtggcctgggc---tgtctacagggcctgccccagcatcactggacatggaagcaggtggaaaaaa-cagtgtggaccaggac-tcctgtccaggagagga----ctcagtgggtgggagcccccgaggaggggccgtggtacgccacaggggcacacgggtgtgatcgtggatggttgattcgctgccttctaaggagggtgggtccaagtaactgctgggatcttctattcttttttacatttttt---atttttaattgtggtaagatacaggtaacataaaatgtaccatctgaactgcttttaa----gtgtacatggg--ctcttgttttgcaaagagggatttggaacttcagtgccggagctgaactgctctggacacagtgaaatcaagctgtcagtgcagtgaccttcccctcctgtactctaagc-------cagttctcttctgaataagtgtgagcaaatgtttaagtggtatctccttgaaaaggtgccagatgatcagccag--cctggggtgctcatgtacccca s panTro4.chr1 224992296 531 + 228333871 CCAAGGAGgcagggcggcggcctgggc---tctttacagggcctgccccagcatcactggactttgaagcaggtggaaaaaaacagtgtggaccaggac-tcctgtccaggagagga----ctcagtgggtgggagcccctgaggaggggccatggtacgccacaggggcacacgggtgtgatcgtggatggttgattcgctgccttctaaggagggtgggtccaagtaactgctgggatcttctattcttttttacatttttt---atttttaattgtggtaagatacaggtaacataaaatgtaccatctgaactgcttttaa----gtgttcatggg--ctcttgttttgcaaagagggatttggaacttcagtgccggagctgaactgccctggacacagtgaaatcaagctgtcagtgcagtgaccttcccctcctgtactctaagc-------cagttctcttctgaataagtgtgagcaaatgtttaagtggtatctccttgaaaaggtgccagatgatcagccag--cctggggtgctcacgtacccca i panTro4.chr1 M 760 C 0 s ponAbe2.chr1 226358211 542 - 229942017 CCAAGGAGGCAGGGCGGCGGCCTGGGC---TGTCTACAGGGCCTGCCCCAGCATCACTGGACATGGAAGCAGGTGGAAAAAA-CAGTGTGGACCAGGAC-TCCTGTCCAGGAGAGGA----CTCAGTGGGTGGGAGCCCCTGAGGAGGGGCCATGGTACCCCACAGGGGCACACGGGTGTGATCGTGGATGGTTGATTCACTGCCTTCTAAGGAGGGTGGGTTCAAGTAACTGCTGGGATCTTCTATTCTTTTTTACATTGTTTTAAAtttttaattgtggtaagatacagataacataaaatgtaccatctgaactgcttttaa----gtgtacaTGGG--CTCTTGTTTTGCAAAGAGGGATTTGGAACTTCGGTGCCAGAGCTGAACTGCCCTGGACACAGTGAAATCAAGCTGCCAGTGCAGCCACCTTCCCCTCCTGTGCTCTAAGCCACACCTCACTTCTCTTCTGAATAAGTGTGAGCAAATGTTTAAGTGGTATCTCCTTGAAAAGGTGCCAGATGATTAGCCAAACCTGGGGGTGCTCATGTACCCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140242348 539 - 143122389 CCAAGGAGGCAGGGCGGCAGCCTGGGC---TATCTGCACGGCCTGCCCCAGCATCACGGGACATGGAAGCAAGTGGGAAAAA-CAGTGTGGACCAGGAC-TCCTGTCCAGGACAGGA----CTCAGTGGGTGGGAGCCCCCGAAGAGGGGCCATGGTaccccacaggggcacacgggtgtgattgtggatggttgattcgctgccttctaaggagggtgggtccaagtaactgcagggatcttctattctTTTTTACATTTTTT-AAAtttttaattatggtaagatacagataacataaaatgtaccatctgaactgcttttaa----gtgtacaTggg--ctcttgttttgcaaagagggatttggaacttcagtgccggagctgaactgccctggacacagtgaaatcaagctgtcagtgcagtgaccttccccttctgtgctctaagccacaccccacttctcttctgaataagtgtgagcagatgtttaagtggtatctccttgaaaaggtgccagatgattagccaa--cctggggtgctcatgtaccccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16953482 537 - 229590362 ---CGGAGgcagggtgaccgcctgggc---tgtctgtagggcctgccccagcgtcactggacatggaagcagatggaacaaaacagtgtggaccaggac-tcctatccaggagagga----ctcagtgggtgggagcccctgaggaggggccgtggtaccccacaggggcacacgagtgtgatcgtggatggttgatacgctgccttctgtggagggtgggtccaagtaactgctgggatcttctattcttttttacatttttt---atttttaattgtggtaagatagagataacataaaatgtgccatctcaactgcttttaa----gtgtacatgggcgctcttgttttgcaaagagggatttggaactttggtgccagagctgaactgccctggacacagtgaaatcaagctgtcagtgcagcgaccttcccctcctgtgctctgagccacaccccacttctcttctgaataagtgtgagcaaatatttaggtggtatccccttgaaaaggtgtcagatgattagccaa--cctggggtgctcatgtacccca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223717141 537 - 227556264 ---CGGAGgcagggcgaccgcctgggc---tgtctgtagggcctgccccagcgtcactggacatggaagcagatggaacaaaacagtgtggaccaggac-tcctatccaggagagga----ctcagtgggtgggagcccccgaggaggggccgtggtaccccacaggggcacacgagtgtgatcgtggatggttgatacgctgccttctgtggagggtgggtccaagtaactgctgggatcttctattcttttttacatttttt---atttttaattgtggtaagatagagataacataaaatgtgccatctcaactgcttttaa----gtatacatgggcgctcttgttttgcaaagagggatttggaactttggtgccggagctgaactgccctggacacagtgaaatcaagctgtcagtgcagcgaccttcccctcctgtgctctgagccacaccccacttctcttctgaataagtgtgagcaaatatttaggtggtatccccttgaaaaggtgtcagatgattagccaa--cctggggtgctcatgtacccca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16766829 537 - 220367699 ---CAGAGGCAGGGCGGCCGCCTGGGC---TGTCTGTAGGGCCTGCCCCAGCGTCACTGGACATGGAAGCAGATGGAACAAAACAGTGTGGACCAGGAC-TCCTATCCAGGAGAGGA----CTCAGTGGGTGGGAGCCCCCGAGGAGGGGCCGTGGTACCCCGCAGGGGCACACGAGTGTGATCGTGGATGGTTGATACGCTGCCTTCTGTGGAGGGTGGGTCCAAGTAACTGCTGGgatcttctattcttttttacatttttt---atttttaattgtggtaagaTAGAGATAACATAAAATGTGCCATCTCAACTGCTTTTAA----GTATACATGGGCACTCTTGTTTTGCAAAGAGGGATTTGGAACTTCGGTGCCGGAGCTGAACTGCCCTGGACACAGTGAAATCAAGCTGTCAGTGCAGCGACCTTCCCCTCCTGTGCTCTGAGCCACACCCCACTTCTCTTCTGAATAAGTGTAAGCAAATATTTAGGTGGTATCCCCTTGAAAAGGTGTCAGATGATTAGCCAA--CCTGGGGTGCTCATGTATCCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82564805 528 + 85787240 ---TGGAGgcagggcggccgcctgggc---tgtctgtagggcctgccccagcatcactggacgtggaagcagatggaaaaaaacagtgtggaccaggac-tcctatccaggagagga----ctcagtgggtgggagcccccgaggaggggccgtggtaccccacaggggcacatgagtgtgatcatggatggttgatacgctgccttctgtggagggtgggtccaagtgactgctgggatcttctattcttttttacatttttt---atttttaattgtggtaagatagagataacataaaatgtaccatctcaactgcttttaa----gtatacatgggcact---------caaagagggatttggaacttcggtgccggagctgaactgccctggacacagggaactcaggctgtcagtgcagtgatcttcccctcctgtgctctgagccacatcccacctctcttctgaataagtgtgagcaaatatttaggtggtgtccccttgaaaaggtgtcagatgattagccaa--cctggggtgctcatgtaaccca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14248302 532 - 49578535 CCAAGGAGTCAGGGCAG-GGCCTGGGC---TGTCTGCAGGGGCTGCCCTGGCATCACTGGACATGGAGGCAGGTGGAAAACA-CAGTGTGGACCAGAAC-TCCTGTTCAGGAGAGGACTCCCTCAGTGGGTGGAAACCCCCAAGGAGGGGCCATGGCACCCCC---AGGCACCCAGGTGTGATTGC-GATGGTTCATGCGCTGCCTTCTAAGGAGGCTGGGTCCAAGTAATTGCTGGGATCTTCTGTTCTTTTTGA-ACTTTCT---ATTTGTAACTGT-GTAAGGTGCAGATGACATAAGCTGTACCACCTGAACTGCTTGTAA----GTGTGCATGGG--CTCTTGGTTTGCAAAGCGGAGTTTGGAACTTCAGTGCCGGAGCTGAACGGCCCTGGACAAAGTGAAATGAAGCTGTCAGTGCGGCCACCTTCCCCTCTTGTGCTCTAAGCAACACCTCGCTTCTCTTCTGAATAAGTGTGAGCAAACATTTCAGCGGTAGCACCTTGAAAAGGGGCCAGATTATTAGCAAA--CATGGGGCACTCA--TACCCCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178823032 445 + 195471971 --------------------CTTAGGCAGTCATCTGTCAGGGATGCTCCATCTTCACATGGTGTAGAAGGCATTGGAGGAAG-CAGATTACCCCAGGATATCCCTCCCAGAAAGGGA----GTCTAAGGGGAAAAACCACTGAGGAAGGGCCATGATGTC---------TACACTGGAGCCATGGTAGCT-----ATGAGCTGAGCTTTGAAGGCTGTGGGTCTAAGTGACTGCAGGCGTCC-------------------------TTCCTTAGCTGGGGTAA---ATGCACAGTATAGG-TGT-CCATCACAGACAGGGCTAA----GTGTGCAAGGA--CGTTTATTTTGTTAATGTG---TTGGGACTCGAATGTCAAAG--GCATGCCACAGGGCAAGGTGA----AAGCTGCCA------TGTCTCTCTCGCTCTTGCTTCTCATCAGCATCCTACCC--------------------TAAACATTGACATGGTGTCTCTTAGAAAAGGTGCCGGGTGCTTGGCCAT--CACAGGGGACTCACACATTCCA i mm10.chr1 C 0 I 16 s canFam3.chr7 36394872 474 + 80974532 ---ACAAGGCAGGA---------GGGC----------------TGCCCTGGCCTCACCAGCCA-GGAAGGACATGGGGAAGA-CCCTCTGGATCAGGAT-CCCTCTCTAGGGAAGGA----CTCA--TGAAGGGAGCCGCTGAGGGGACACT-------------------CACTGAGGCAGTAACGGGTGGTCGGCATGCTGCCTTTCGGGGAGGGCAGGCATAAGTAACTACAGGGCGTTAACATCTTTTCC-------TTt---ctttttaattgtgctaagatacgtgtaacagaaaatttaccatctgagccttttcttaaagtgtataCATgga--tttttgttttgctaaggag--tttgggactttagtaccagagctgaaccgtcctggatgaagtgga--------gttagcattgtaagctccttgtctcacgctctgagcgacatccagcttctcctctgaataaatgtgaacaaatatt-aaatgttatcactttgaagacatg--agattattagGCAA--CCTAGCCTACTCAGATACCCCA i canFam3.chr7 C 0 C 0 a score=152176.000000 s hg38.chr1_KI270759v1_alt 237316 44 + 425601 --ataccgccctgTCCAGGGC-ACCTCAAAATGAAGCACATCAGAAA s panTro4.chr1 224992827 44 + 228333871 --gtacagccctgTCCAGGGC-ACCTCAAAATGAAGCACATCAGAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226358753 45 - 229942017 --ATACAGCCCTGTCCAGGGCAACCTCAAAATGAAGCACATCAGAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140242887 44 - 143122389 --atacagccctgTCCAGGGC-CCCTCAAAATGAAGCACATCAGAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16954019 44 - 229590362 --atacagccctgTCCAGGGC-ACCTCAAAATGAAGCACATCAGAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223717678 44 - 227556264 --atacagccctgTCCAGGGC-ACCTCAAAATGAAGCACATCAGAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16767366 44 - 220367699 --ATACAGCCCTATCCAGGGC-ACCTCAAAATGAAGCACATCAGAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82565333 44 + 85787240 --atacagccctgTCCAGGGC-ACCTCAAAATGAAGCACATCAGAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14248834 44 - 49578535 --ACAAAGCCCTGTCCAGGGC-ACCTCAAAATGAACCACATCGGAAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36395346 43 + 80974532 GAATAA---CCTATCCAGGAT-ACCTCAAGATGAACAACATAAGCAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178823477 16 + 195471971 I a score=747044.000000 s hg38.chr1_KI270759v1_alt 237360 224 + 425601 CCGTCCTCCTGCACCTACAGTACTGGCCTTGTCTGTGGTTCCTACAAGGGTTGATGTGGATGCATCTTCAGGT-----------------------GGCTCC--------GACCTCT--------CCCCCTCTATCCC-TAATGA-CCTCCCTGGAATTCTGAGACAAGGACATCAGGGTGCCAAGGCCAGGGACCAAAACAGCAGAAAGAGTG-TCCCAGCCAGCAGGATGACCCAGCACTGACACAAAAATAGTTTAGAGGGCA s panTro4.chr1 224992871 224 + 228333871 CCATCCTCCTGCATCTACAGTACTGGCCTTGTCTGTGGTTCCTAAAAGGGCTGATGTGGATGCATCTTCAGGT-----------------------GGCTCC--------GACCTCT--------CCCCCTCTATCCC-TAATGA-CCTCCCTGGAATTCTGAGACAAGGACATCAGGGTGCCGAGGCCAGGGACCAAAACAGCAGAAAGAGTA-TCCCAGCCAGCGGGATGACCCAGCACTGACACAAAAATAGTTTAGAGGGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226358798 224 - 229942017 CCGTCCTCCTCCATCTACAGTACTGGCCTTGTCTGTGGTTCCTAAAAGGGTTGATGTGGGTGCATCTTCAGGT-----------------------GGCTCT--------GACCTCT--------CTCCCTCTATCCC-TAATGA-CTTCCCTGGAATTCTGAGACAAGGACATCAGGGTGCTAAGGCCAGGGACCAAAAGAGCAGAAAGAGTG-TCCCAGCCAGTGGGATGACCCAGCACTGACACAAAAATAGTTTGGAGGGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140242931 223 - 143122389 CCGTCCTCCTGCATCTACAGTACTGGCCTTGTCTGTGGGTCCTAAAAGGGTTGATGTGGATGCATCTTCAGGT-----------------------GGCTCT--------GACCTCT--------C-CCCTCTATCCC-TAATGA-CCTCCCTGGAATTCTGAGACAAGGACATCAGGGTGCCAAGGCCAGGGACCAAAACAGCAGAAAGAGTG-TCCCAGCCAGCGGGATGACCCAGCACTGACACAAAAATAGTTTGGAGGGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16954063 220 - 229590362 CCATCCTCCTGCATCTACAGTACTGGCCTTGTCTGTGGTTCCTAAAAGGGTTGATGTGGATGCATCTTCAGGT-----------------------GGCTCT--------GACCTCT--------CCTCCTCTATCCC-TAATGC-CTTCCCTGGAATTCTGAGACGAGGACATCAGGGTGCCAAGGCCAAGGACCAAAACAGC----AGAGTG-TCCCAGCCAGTGGGATGACCCAGCACTGACACAAAAATAATTTGGGGGGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223717722 220 - 227556264 CCATCCTCCTGCATCTACAGTACTGGCCTTGTCTGCGGTTCCTAAAAGGGTTGATGTGGATGCATCTTCAGGT-----------------------GGCTCT--------GACCTCT--------CCTCCTCTATCCC-TAATGC-CTTCCCTGGAATTCTGAGACGAGGACATCAGGGTGCCAAGGCCAGGGACCAAAACAGC----AGAGTG-TCCCAGCCAGCGGGATGACCCAGCACTGACACAAAAATAATTTGGGGGGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16767410 220 - 220367699 CCGTCCTCCTGCATCTACAGTACTGGCCTTGTCTGTGGTTCCTAAAAGGGTTGATGTGGATGCATCTTCAGGT-----------------------GGCTCT--------GACCTCT--------CCTCCTCTATCCC-TAATGC-CTTCCCTGGAATTCTGAGACGAGGACATCAGGGTGCCAAGGCCAGGGACCAAAACAGC----AGAGTG-TCCCAGCCAGTGGGATGACCCAGCACTGACACAAAAATAGTTTGGGGGGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82565377 220 + 85787240 CCGTCCTCCTGCATCTACAGTACTGGCCTTGTCTGTGGTTCCTAAAAGGGTTGATGTGGATGCACCTTCAGGT-----------------------GGCTCT--------GACCTCT--------CCTCCTCTATCCC-TAATGC-CTTCCCTGGAATTCTGAGACAAGGACATCAGGGTGCCAAGGCCAGGGACCAAAACAGC----AGAGTG-TTCCAGCCAGTGGGATGACCCAGCACTGACACAAAAACAGTTTGGGGGGCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14248878 240 - 49578535 CTGTAC-CCTGCATCTACAGGACTGGCCTCGTCCGTGTTTCCCGAAAGGGTTGATGTGGATGCATGTTCTGGG--GCCTGGGCCCCAAGCCCAA--GGCTCT--------GGCCTCT--------CCTCCACTGCCCC---GCAC-CCTCCCTGGAATTCTGAGACGATGACATCAGGGTGCCAAGGCCAGGGACCAAAACATCAGAAAGAGCG-TTCCAGCCAGCAGGGTGACCCAGCACTGACACAAAAACAGTTTGGAGGGCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178823493 202 + 195471971 -------CCTTCATCTCTCACCCTGG--------------TCCGACACCGTCTGTGTGGATGCTTCTTGAGGT-----------------------GGGCCTAGGCCTAAGCCTTCTGTGTTAGGCTTCCTCTTCCCTTTACCCA-CATCCCTG------------AAGGACTCCAGGG-----AGGCCAGGGAGCACAACAGCAGAGAGAGTTCTTGTAGCCAGCAG--TGACTCTGCACTTGCTGAGGAACAATCTGGACCTGC i mm10.chr1 I 16 C 0 s canFam3.chr7 36395389 237 + 80974532 CTGTCTCCCTGCACATAGAACAGTGGCCT-ATCTGTGGTTCCTAAGAGAGTCAATGTAGATCCATCTTCAGGCAGGCCTGGGCCTCAAGCCTCGGTCGTCCT--------GTCTTCT--------CCTGCACCATCCC-TAACCCACCTCCCTGCAGTTCTGAGACAAGGACATCAGGTCACCAAG-----GGACTGAACTAAC----CGTGT--TACCAGCTAGGAGGATGAGCCAGCACTTGCATCAAAATAGTTTGGAGGGCA i canFam3.chr7 C 0 I 1075 a score=1019499.000000 s hg38.chr1_KI270759v1_alt 237584 365 + 425601 AAGGACACTGG----TCCAATCTTGATTTCATGATGTACCATATGTAGTGACC---ACAGATAAGGGGC------------------CTTAC-AATG--AGGAGTTATGCTTGTTAGTAAACTAAAGTTTGCATTTCACAC---TTTT----TT-AAAAAAATTAAAGATA---TCTCTCTCACTGATTTGCAATCCA-AAATGTAATCAAAGCCCTGAGTTCACCCATGAGACTGTGTCGAGGAGCGGGGCATCGGTCT-G-GGGTCACAG-AACATCATAAG-AGAAGGTGTGG--CTTCCATCTGCCCAGTGGCCACGT-GGC---AGCTGAGGCCACCCTCCTGATCTGCT-CAGGCTTCTGGGGCATGGGTAACAGTGAGGGGGAGGAAGTGACAGTTGGAG-AGAAT-GTGT s panTro4.chr1 224993095 363 + 228333871 AAGGACACTGG----TCCAATCTTGATTTCATGATGTACCATATGTAGTGACC---ACAGATAAGGGGC------------------CTTAC-AATG--AGGAGTTATGCTTGTTAGTAAACTAAAGTTTGCATTTCACAC---TTTT----TTTAAAAAAATTAAAGATA---TCTCTCTCACTGATTTGCAATCCA-AAATGTAATCAAAGCCCTGAGTTCACCCATGAGACTGTGTCGTGGAGCGGGGCATCGGTCT-G-GGGTCACAG-AACAT---AAG-AGAAGGTGTGG--CTTCCATCTGACCAGTGGCCACGT-GGC---AGCTGAGGCCACCCTCCTGATCTGCT-CAGGCTTCTGGGGCATGGGTAACAGTGAGGGGGAGGAAGTGACAGTTGGAG-AGAAT-GTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226359022 374 - 229942017 AAGGACACTGG----TCCAATCCTGATTTCATGATGTACCATATGTAGTGACCACAACAGGTAAGGGGC------------------CTTAC-AATG--AGGAGTTATGCTTGTTAGTAAACTAAAGTTTGCATTTCACAC---TTTT----TT-TTTAATATTAAAGATA---TCTCTCTCACTCATTTGCATTCCA-AAATGCAATCAAAGCCCTGAGTTCACCCATGAGACTGTGTCATGGAGTGGGGCATCGGCCTGG-GGGTCACAGAAACAT---AAGAAGAAGGTGTGGGCTTTCCATCTGAGCAGTGGCCACATGGGC---AGCTGAGTCCACCCTCCTGTTCTGCTCCAGGCTTCTGGGGCGTGGGTGACAGTGAGGTGGAGGACGTGACAGTTGGAGAAGAATGGTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140243154 358 - 143122389 AAGGACACTGG----TCCAATCTTGATTTGATGATGTACCATATGTAGTGACC---ACAGGTACGGGGC------------------CTTCC-CATG--AGGAGTTATGCTTGTTAGTAAACTAAAGTTTGCATTTCACAT---TTTT----TT---TTAAATTAAAGATA---TCTCTCTCACTCATTTGCAATCCA-AAATGCAATCAAAGCCCTGAGTTCACCCATGAGAC--TGTCTTGGAGCGGGGCATTGGTCT-G-GGGTCACAG-AACAT---AAC-AGAAGGTGTGG--CTTCCATATGACCAGTGGCCACGT-GGC---AGCCGAGTCCACCCTCCTGTTCTGTT-CAGGTTTCTGGGGTGTGGGTGACAGTGCGGGGGAGGAAGTGACAGTTGGAG-AGAAT-GTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16954283 357 - 229590362 AAGGACACTGG----TCCGATCTTGATTTCATGATGTACCATATGTAGTGACC---ACAGGTAAGGGGC------------------CTTAC-AATG--AAGAGTTATGCTTGTTAGTAAACTAAAGTTTGCATTTCACAC----TTT----TT---TTAAATTAAAGATA-----TCTGTCACTCATTTGCAATCCA-AAATGCAATCAAAGCCCTGAGTTCCCCCATGGGACTGGGTCTTGGAGCAGGGCATCGGCCT-G-GGGTCACAG-AACAT---AAC-AGAAGGTGTGG--CTTCCGTCTGACCAGTGGCCACAT-GGC---AGCTGAGTCCATCCTCCTGTCCTGCT-CAGGCTTCTGGGGGGTGGGTGACAGTGAGGGGGAGGAAGTGACAGTTGGAG-AGAAA-GTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223717942 357 - 227556264 AAGGACACTGG----TCCGATCTTGATTTCATGATGTACCATATGTAGTGACC---ACAGGTAAGGGGC------------------CTTAC-AATG--AAGAGTTATGCTTGTTAGTAAACTAAAGTTTGCATTTCACAC----TTT----TT---TTAAATTAAAGATA-----TCTGTCACTCATTTGCAATCCA-AAATGCAATCAAAGCCCTGAGTTCCCCCATGGGACTGGGTCTTGGAGCGGGGCATCGGCCT-G-GGGTCACAG-AACAT---AAC-AGAAGGTGTGG--CTTCCGTCTGACCAGTGGCCACAT-GGC---AGCTGAGTCCATCCTCCTGTCCTGCT-CAGGCTTCTGGGGGGTGGGTGACAGTGAGGGGGAGGAAGTGACAGTTGGAG-AGAAA-GTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16767630 360 - 220367699 AAGGACACTGG----TCCAATCTTGATTTCATGATATACCATATGTAGTGACC---ACAGGTAAGGGGC------------------CTTAC-AATG--AAGAGTTATGCTTGTTAGTAAACTAAAGTTTGcatttcacac---tttt----tt---ttaaattaaagata---tCTCTCTCACTCATTTGCAATCCA-AAATGCAATCAAAGCCCTGAGTTCACCCATGGGACTGTGTCTTGGAGCGGGGCATCAGCCT-G-GGGTCACAG-AACGT---AAC-AGAAGGTGTGG--CTTCCATCTGACCAGTGGCCACAT-GGC---AGCTGAGTCCATCCTCCTGTCCTGCT-CAGGCTTCTGGGGGATGGGTGACAGTGAGGGGGAGGAAGTGACAGTTGGAG-AGAAA-GTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82565597 360 + 85787240 AAGGACACTGG----TCCAATCTTGATTTCATGATGTACCATATGTAGTGACC---ACAGGTAAGGGGC------------------CTTAC-AATG--AAGAGTTATGCTTGTTAGTAAACTAAAGTTTGCATTTCACAC---TTTT----TT---TTAAATTAAAGATA---TCTCTCTCACTCATTTGCAATCCA-AAATGCAATCAAAGCCCTGAGTTCAGCCATGGGACTGTGTCTTGGAGCGGGGCATCAGCCT-G-GGGTCACAG-AACGT---AAC-AGAAGGTGTGG--CTTCCATCTGACCAGTGGCCACAT-GGC---AGCTGAGTCCATCCTCCTGTCCTGCT-CAGGCTTCTGGGGGGTGGGTGACAGTGAGGGGGAGGAAGTGACAGTTGGAG-AGAAA-GTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14249118 381 - 49578535 AAGGACACT-G----CCCGATCTTGATTTCATGATGTGCCGTATATAGTGACC---ACATACATATGGCACATCGTGAAATCAAGGACTTAC-AATGCAGAGAGTTGTGCTTGTTAGT----TTAAGTTTGCAAAGCACGCATTTTTT----TT---TTTAATTCAAGATA---TCCCTCTCAGTTACTTGCAATCCA-AAATGCAATCAAAGCCTTGAGTTCATCCATGGGATAGTATCCTGGAGCGGGGCCTCGGCCT-G-GGGTCACAG-AAGAT---GAT-AGAAGGTGTGG--CTTCCATCTGACCAGTGGCCAGAT-GGCGGTGGCTGAGTCCCACCTCCCGTcctgct-caggcttctggagggtgagggacagtgaccagaaggaagtgacatttgGAG-AGAAT-GTGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178823695 332 + 195471971 AAGAGCACAGGGACCGTCTATCTGGATTTCA-------CTGCATGTAGCACGT---ATGTGTGAAGAGC------------------CTTTCTAATA--TATATCCATTCCCG-----GGACTACAGCTAGCAGATCATAC---ATTTAACATT---TGATATTAAAGGTATTATCCATCTCTCTCATTTGCAATTCAGAAATGCAACGAAGCACCCCAGTTTG-CTATGGAAA--TGTCAT------GGGCATCCACTG-GTGAGTCACAG---------GAC-AGATGTTGTGA--CTTCTATCTGATCGGTGGCCACAT-G-----AGC--------CCTTCCTCTGCTTGT-GATGACCCTTGAAGAT------CAGTGATGGGGAGGAAGTGACACTTGGAG-GGACT-ATGT i mm10.chr1 C 0 I 41 e canFam3.chr7 36395626 1075 + 80974532 I a score=31381.000000 s hg38.chr1_KI270759v1_alt 237949 10 + 425601 ACCATGATTG s panTro4.chr1 224993458 10 + 228333871 ACCATGATTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226359396 10 - 229942017 ACCATGATTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140243512 10 - 143122389 ACCATGACCG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16954640 10 - 229590362 ACCATGATTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223718299 10 - 227556264 ACCATGATTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16767990 10 - 220367699 ACCATGATTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82565957 10 + 85787240 ACCATGATTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14249499 10 - 49578535 ACCATGACTG i calJac3.chr19 C 0 C 0 e mm10.chr1 178824027 41 + 195471971 I e canFam3.chr7 36395626 1075 + 80974532 I a score=487275.000000 s hg38.chr1_KI270759v1_alt 237959 211 + 425601 GAACAAGAAGTTggctgggcgcggtggctcacgcctgtaatccaagcactttgggaggccgaggcgggcggatcacgaggtcaggggttcgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaagcttggcggcacgtacctgtaatcccagc-tactcaggaggctgaggcagg-agaatcgctt s panTro4.chr1 224993468 211 + 228333871 GAACAAGAAGTTggctgggcgtgggggctcacgcctgtaatccaagcactttgggaggccgaggcgggcggatcacgaggtcaggggttcgagaccagcctgagcaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaagcgtggcggcacgtacctgtaatcccagc-tactcaggaggctgaggcagg-agaatcgctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226359406 213 - 229942017 GAACAAGAAGTTggctgggcgtggtggctcacgcctgtaatccaagcactttgggaggccaaggcaggtggatcacaaggtcagggatttgagaccagcctgaccaacatggtggaaccccgtctctactaaaaatacaaaaattagccaagcgtggtggcgcatacctgtactcccagcttcctcaggaggctgaggcaggaagaatcgcgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140243522 211 - 143122389 GAACAAGAAGTTggctgggcgcggttgctcacgcctgtaatccaagcactttgggaggccgaggcgggtagatcacaaggtcaggggttcgagaccagcctgactaacatggtgaaaccccatctctactaaaaatacaaaaattagccaagcgtggcggcgcacacctgtaatcccacc-tactcaggaggctgaggcagg-agaatcgctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16954650 211 - 229590362 AAACAAGAAGCTggccgggagcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggggttcaagaccagcctgaccaacatggtgaaaccctatctctcctaaaaatacaaagattagccaagtacggtggcacacacctgtaatcccagc-tactcaggaggctgaggcagg-aggattgctt i rheMac3.chr1 C 0 M 777 s macFas5.chr1 223718309 211 - 227556264 AAACAAGAAGCTggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatcacgaggtcaggggttcaagaccagcctgaccaacatggtgaaaccctatctctcctaaaaatacaaagattagccaagtacggtggcacacacctgtaatcccagc-tactcaggaggctgaggcagg-aggattgctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16768000 211 - 220367699 AAACAAGAagttgaccgggcatggtggctcacgcctgtaatcccagcactttgggaggctgaggtaggcagatcacgaggtcaggggttcaagaccagcctgaccaacatggtgaaaccctatctctcctaaaaatacaaagattagccaagtacggtggcacgcacctgtaatcccagc-tactcaggaggctgaggcagg-agaatggctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82565967 211 + 85787240 AAACAAGAAGTTggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcagggggtcaagaccagcctgaccaacatggtgaaaccctatctctactaaaaatacaaagattagccaagtacggtggcacgcacctttaatcccagc-tactcaggaggctgaggcagg-agaattgctt i chlSab2.chr25 C 0 C 0 e mm10.chr1 178824027 41 + 195471971 I e canFam3.chr7 36395626 1075 + 80974532 I e calJac3.chr19 14249509 0 - 49578535 C a score=145298.000000 s hg38.chr1_KI270759v1_alt 238170 84 + 425601 gaa-cctgggaggcagaggttg-cagtgagcagagatcgcgccactgtactccagccttgacgac-agagcgagactccatctcaat s panTro4.chr1 224993679 84 + 228333871 gaa-cctgggaggcagaggctg-cagtgagcagagattgcgccactgtactccagccttggcgac-agagcgagactccgtctcaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226359619 85 - 229942017 gaaccctgggaggcagaggttgccagtgagcagagattgtgccactgtactccagccttg-cgac-agagcgagactccatctccat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140243733 84 - 143122389 gaa-cctgggaggcagaggttg-cagtgagcagagattgcgccactgtactccagccttggtgac-agagtgagactccatctcaat i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223718520 85 - 227556264 gaa-cctgggaggcggaggttg-cagtgagcagagattgtaccactgtactccagccttggcgacaagagtgagactctgtctcaat i macFas5.chr1 C 0 I 2 s papAnu2.chr1 16768211 84 - 220367699 gaa-cctgggaggcggaggttg-cagtgagcagagattgtaccactgtactccagccttggcgac-agagtgagactctgtctcaat i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82566178 84 + 85787240 gaa-cctgggaggcagaggttg-cagtgagcagagactgcgccactgtactccagccttggcgac-agagtgagactccatctcaat i chlSab2.chr25 C 0 I 5 e mm10.chr1 178824027 41 + 195471971 I e canFam3.chr7 36395626 1075 + 80974532 I e calJac3.chr19 14249509 0 - 49578535 C e rheMac3.chr1 16954861 777 - 229590362 M a score=41646.000000 s hg38.chr1_KI270759v1_alt 238254 21 + 425601 aaaaaagaaaaagaaaaagaa s panTro4.chr1 224993763 21 + 228333871 aaaaaagaaaaagaaaaagaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226359704 21 - 229942017 aaaaaagaaaaagaaaaagaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140243817 21 - 143122389 aaaaaagaaaaagaaaaagaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16955645 21 - 229590362 aaaaaaaaaaaaaaaaaaaaG i rheMac3.chr1 M 777 C 0 s macFas5.chr1 223718607 21 - 227556264 aaaagaaaaaaaaaaaaaaaG i macFas5.chr1 I 2 C 0 s papAnu2.chr1 16768296 21 - 220367699 aaaaagagaaaaaaaaaaaag i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82566267 21 + 85787240 agagaaaaaaaaaaaaaaaaG i chlSab2.chr25 I 5 C 0 e mm10.chr1 178824027 41 + 195471971 I e canFam3.chr7 36395626 1075 + 80974532 I e calJac3.chr19 14249509 0 - 49578535 C a score=198506.000000 s hg38.chr1_KI270759v1_alt 238275 73 + 425601 aaaC--GAGAAGTTGCCAAGACCCT-GCCTCTTCCTGCACAGAGCATCTGGTTCTTCCATT-TCAGCAGGCTCTTAC s panTro4.chr1 224993784 73 + 228333871 aaaC--GAGAAGTTACCAAGACCCT-GCCTCTTCCTGCACAGAGCATCTGGTTCTTCCATT-TCAGCAGGCTCTTAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226359725 76 - 229942017 aaaCAGGAGAAGTTACCAAGACCCTGGCCTCTTCCTGCACAGAGCATCTGGTTCTTCCATT-TCAGCAGGCTCTTAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140243838 73 - 143122389 aaaT--GAGAAGTTACCAAGACCCT-GCCTCTTCCTGCACAGAGCATCTGGTTCTTCCATT-TCAGCAGGCTCTTAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16955666 73 - 229590362 GAAC--AAGAAGTTACCAAGACCCT-GCCTGTTCCTGCACAGAGCATCTGGTTCTTCCATT-TCAGCAGGCTCTTAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223718628 73 - 227556264 GAAC--AAGAAGTTACCAAGACCCT-GCCTGTTCCTGCACAGAGCATCTGGTTCTTCCATT-TCAGCAGGCTCTTAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16768317 73 - 220367699 gaac--aagaagtTACCAAGACCCT-GCCTGTTCCTGCACAGAGCATCTGGTTCCTCCGTT-TCAGCAGGCTCTTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82566288 73 + 85787240 GAAC--AAGAAGTTACCAAGATCCT-GCCTGTTCCTGCACAGAGCATCTGGTTCTTCCATT-TCAGCAGGCTCTTAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14249509 66 - 49578535 AAGC--AAGAAGTGACCAAGACCCT-GCCTTTCTCTGCTCAGAG----TGGTTCCTACGCTGTCAGCAGGCT----G i calJac3.chr19 C 0 C 0 e mm10.chr1 178824027 41 + 195471971 I e canFam3.chr7 36395626 1075 + 80974532 I a score=91318.000000 s hg38.chr1_KI270759v1_alt 238348 31 + 425601 TCTGCCCTA-CCATAT-GGTGCCAAACTGCCTG s panTro4.chr1 224993857 31 + 228333871 TCTGCCCTA-CCATAT-GGTGCCAAACTGTCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226359801 33 - 229942017 TCTGCCCTAGCCATATGGGTGCCAAACTCCCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140243911 31 - 143122389 TCTGCCCTA-CCATAT-GGTGCCAAACTGCCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16955739 32 - 229590362 TCTGCCCTA-CCATATGGACGCCAAACTGCCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223718701 32 - 227556264 TCTGCCCTA-CCATATGGACGCCAAACTGCCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16768390 32 - 220367699 TCTGCCCTA-CCATATGGATGCCAAACTGCCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82566361 32 + 85787240 TCTGCCCTA-CCATATGGACGCCAAACTGCCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14249575 32 - 49578535 ACTGCCCTG-CCACATGGGTGCCAAACTGCCTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36396701 29 + 80974532 TCTGCTCCA-CTG---GGGCACCCAGCTGCCCG i canFam3.chr7 I 1075 C 0 e mm10.chr1 178824027 41 + 195471971 I a score=990600.000000 s hg38.chr1_KI270759v1_alt 238379 273 + 425601 ACC-TCAGCGAA--GGCCCATCCTCCCAGACTCCT------------GCTCTCTCCACCTCCACGGATATCTCACCATCATTAGGAACAGCAGTTCTTTATACCCATGTGGAAAA----ATTTCCATCAATTTA--TCTGTT-GCATAATTTATATTTTAATATCACCA-AGAAATACAGTGGAGTTTAATATAGAACATAAATAATTGGCGCTATATATAAATCGGCAGGTTTGAGGTAGACAAGTTTGATGGAATTCCCAAAAGCAAGTTGATTGATTATTTAAACCTGACCTG s panTro4.chr1 224993888 273 + 228333871 ACC-TCAGCGAA--GGCCCATCCTCCCAGACTCCT------------GCTTTCTTCACCTCCACTGATATCTCACCATCATTAGGAACAGCAGTTCTTTATACCCATGTGGAAAA----ATTTCCATCCATTTA--TCTGTT-GCATAATTTATATTTTAATATCACCA-AGAAATACAGTGGAGTTTAATATGGAACATAAATAATTGGCGCTATATATAAATCGGCGGGTTTGAGGTAGACAAGTTTGATTGAATTCCCAAAAGCAAGTTGATTGATTATTTAAACCTGACCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226359834 277 - 229942017 ACCGTCAGCTGAATGGCCCATCTTCCTAGACTCCT------------GCTTTCTCCACCTCCACTGATATCTCACCATCATTAGGAACTGCAGTTCTTTATACCCATGTGGAAAA----ATTTCCATCAATTTC--TCTGTT-GCATAATTTATATTTTAATATCACCAGAGAAATACAGCAGAGTTTAATATAGAACATAAATAATTGGCGCTATATATAAATCAGCGGGTTTGAGGTAGACAAGTTTGATTGAATTCCCAAAAGCAAGTTGATTGATTATTTAAACCTGACCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140243942 275 - 143122389 ACC-TCAGCGAA--GGCCCATCTTCCCAGACTCCT------------GCTTTCTCCACCTCCACTGATATCTCACCATCATTAGGAACAGCAGTTCTTTATACCCATGTGGAAAA----ATTTCCATCAATTTATCTCTGTT-GCATAATTTATATTTTAATATCACCA-AGAAATACAGTGGAGTTTAACATAGAACATAAATAATTGGCGCTATATATAAATCAGCAGGTTTGAGGTAGACAAGTTTGATTGAATTCCCAAAAGCAAGTTGATTGATTATTTAAACCTGACCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16955771 275 - 229590362 ACC-TCAGTAAA--CACCCTTCTTCCCAGACTCCT------------GCTTTTTCCACCTCCATTGATATCGCACCATAATTAGGAACAGCAGTTCTTTATACCCATGTGGAAAA----ATTTCCATCAATTTATCTCTGTT-GCATAATTTATATTTTAATATCACCA-AGAAATACAGTGGAGTTTAATATAGAACATAAATAATTAGTGCTATATATAAATCAGCAGGTTTGAGGTAGACAAGTTTGATTGAATTCCCAAAAGCGAGTTGATTGATTATTTAAACCTGACCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223718733 275 - 227556264 ACC-TCAGTAAA--CGCCCTTCTTCCCAGACTCCT------------GCTTTTTCCACCTCCACTGATATCGCACCATAATTAGGAACAGCAGTTCTTTATACCCATGTGGAAAA----ATTTCCATCAATTTATCTCTGTT-GCATAATTTATATTTTAATATCACCA-AGAAATACAGTGGAGTTTAATATAGAACATAAATAATTAGTGCTATATATAAATCAGCAGGTTTGAGGTAGACAAGTTTGATTGAATTCCCAAAAGCGAGTTGATTGATTATTTAAACCTGACCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16768422 275 - 220367699 ACC-TCAGTAAA--GGCCCTTCTTCCCAGACTCCT------------GCTTTTTCCACCTCCACTGACATCGCACCATAATTAGGAACAGCAGTTCTTTATACCCATGTGGAAAA----ATTTCCCTCAATTTATCTCTGtt-gcataatttatattttaatatcaccA-AGAAATACAGTGGAGTTTAATATAGAACATAAATAATTAGTGCTATATATAAATCAGCAGGTTTGAGGTAGACAAGTTTGATTGAATTCTCAAAAGCAAGTTGATTGATTATTTAAACCTGACCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82566393 275 + 85787240 ACC-TCAGTAAA--GGCCCTTCTTCCCAGACTCCT------------GCTTTTTCCACCTCCACCGATATCTCACCATAATTAGGAACAGCAGTTCTTTATACCCATGTGGAAAA----ATTTCCATCAATTTATCTCTGTT-GCATAATTTATATTTTAATATCACCA-AGAAATACAGTGGAGTTTAATATAGAACATAAATAATTAGTGCTATCTATAAATCAGCAGGTTTGAGGTAGACAAGTTTGATTGAATTCCCAAAAGCAAGTTGATTGATTATTTAAACCTGACCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14249607 275 - 49578535 ACC-TTAGCAAA--GGTCTGTCTTCCCAGACTCCT------------GCTTCTTCCACCTCCACTGATCCCTCACCATCATTCAGAACAGCAGTTCTTTTTAGCCATGTGGAAAA----ATTTCCATCAATTTATCTCTGTT-GCATAATTTATATTTTAATATCTCCA-AGAAATACAGTGGAGTTTAATATAGAACATAAATAATTGGCACTATATATAAATCGGCAGGTTTGAGGCAGACAAGTTTGATTGAATTCCCAAAAGCAACTTGATTGATGATTTAAACCTGACCTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178824068 267 + 195471971 ACC-ACAGTGAG--G--CCATCTTCCCACATACCTACCCCTCCACAGGCTTCATCCTTCTCCCTAGACGCTGCACTGCATTTGGGAACTGCAGCT-TCTCTACCCCTGTGGAAAA----AACTCCACTCATCCA--TCTATTAAAATGATTTACATTTTAACATCTCAA-ATAAATATAGTTGAGCTTAATATATAGCCAAAATAATTAATGCTATTTATATAT------GTTTGATG------AACTTGATTGAATTGCCTAAAACCAC----TTCGTGTTCCAAGCCTGACCTG i mm10.chr1 I 41 I 584 s canFam3.chr7 36396730 264 + 80974532 ACC-TCGGTGGG--GGATCAT-TTCCCAGACTCCT------------TCTCTC-CCACCCCC--TGATGCCTCCCTGCAGTGAGGAGTTGCAGTCCT---TATCCATTTGGAAAGATTCATTCCCATCAGTGTAGCTCTGAT-GCGGAACTTACATTCTAACATCTCTA-AGAAATACAGTGGAGTTTAACCTAGAAC----ATAACTGGTGCTATTTATAAATCTGTATGTTGGAAGTAGGGAAGCTTGATGGAATGTCTGGAAGCAAC----TTAATTATGGACACCTGAGGTG i canFam3.chr7 C 0 C 0 a score=508169.000000 s hg38.chr1_KI270759v1_alt 238652 172 + 425601 GAGTCTCCTAGAGTGGAGG-AGGGGAGCAGGAATCTCCAACGCTTGAGATGGCCCTGAAGGTGAGAGTGT--TGTCACCCAGCCGGACCACTGCCCCTCA-GCCTCAGCCACCCACCACCTCCCTCTGGAAACCTGGGAGGCCTTCCTCCATAggaacagatttcatgggtttatg s panTro4.chr1 224994161 172 + 228333871 GAGTCTCCTAGAGTGGAGG-AGGGGAGCAGGAATCTCCAGCGCTTGAGATGGCCCTGAAGGTGAGAGTGT--TGTCACCCAGCCCGACCACTGCCCCTCA-GCCTCAGCCACCCACCACCTCCCTCTGGAAACCTGGGAGACCCTCCTCCATAggaatggatttcgtgggtttatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226360111 175 - 229942017 GAGCCTCCTAGAATGGAGG-AGGGGAGCAGGAATCTCCAACGCTTGAGATGGCCCTGAAGGTGAGAGTGTTGTGTCACCCAGCCCGACCACTGCCCCTCAGGCCTCAGCCACCCACCACCTCCCTCTGGAAACCTGGGAGGTCTTCCTCCATAggaacggatttcatgagtttatt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140244217 173 - 143122389 GAGCCTCCTAGAGTGGAGG-AGGGGAGCAGGAATCTCCAACGCTTGAGATGGCCCTGAAGGTGACAGTGT--TGTCACCCAGCCCGACCACTGCCCCTCAGGCCTCAGCCACCCACCACCTGCCTCTGGAAACCTGGGAGGTCTTCCTCCATAGGAACGGATTTCATAGGTTTATT i nomLeu3.chr5 C 0 I 300 s rheMac3.chr1 16956046 173 - 229590362 GAGCCTCCCAGAGAGGAGG-AGGGGAGCAGGAATCGCCAACGCTTGAGATGGCCCTGAAGGTGAGCGTGT--TGTCACCCAGCCCGACCACTGCCCCTCAGGCCTCGGCCACCCACCACCTTCCTCTGGAAACCTGGGAGGTCTTCCTCCATAggaatggatttcatgggtttatt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223719008 173 - 227556264 GAGCCTCCCAGAGAGGAGG-AGGGGAGCAGGAATCGCCAACGCTTGAGATGGCCCTGAAGGTGAGCGTGT--TGTCACCCAGCCCGACCACTGCCCCTCAGGCCTCGGCCACCCACCACCTTCCTCTGGAAACCTGGGAGGTCTTCCTCCATAggaatggatttcatgggtttatt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16768697 173 - 220367699 GAGCCTcccagagaggagg-aggggagcagGAATCGCCAACGCTTGAGATGGCCCTGAAAGTGAGAGTGT--TGTCACCCAGCCCGACCACTGCCCCTCAGGCCTCGGCCACCCACCACCTTCCTCTGGAAACCTGGGAGGTCTTCCTCCATAGGAACGGATTTCATGGGTTTATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82566668 173 + 85787240 GAGCCTCCTAGAGAGGAGG-AGGGGAGCAGGAATCGCCAACGCTTGAGATGGCCCTGAAGGTGAGCGTGT--TGTCACCCAGCCCGACCACTGCCCCTCAGGCCTTGGCCACCCACCACCTTCCTCTGGAAACCTGGGAGGTCTTCCTCCATAggaacggatttcatgggtttatt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14249882 171 - 49578535 GAGCCTCCTAGAGTGTGGGCAGCGGAGCGGGAATCGCCATCGCTTGAGATGGCCTTGAAGGTGAGAGGCT----TCTGCCAGCCC-AGCACCATCTCTCAGGCCTCAAACACCCACCACCTCCCTCTGGAAACCTGAGAGGTCTTCCTCTCAGggaagggattgtatgcatttatt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36396994 115 + 80974532 --------------GGGGG-TGGGGCACAAG----------------------------------------------CCCAGCTCAACTCTGACCTCTTGTGCCTTGGCCACCCCAGGACTTCCTCAGGAGACCTGGGAGGTTTTCACAGGTGtggaagaggctgatgggcttatt i canFam3.chr7 C 0 C 0 e mm10.chr1 178824335 584 + 195471971 I a score=1701615.000000 s hg38.chr1_KI270759v1_alt 238824 547 + 425601 tagagcaa-cttcttatttagtagacaagaaaactgaggcccagtgaagGTAACAGGTTTTCCAGTGACTCCAGAAGCAGGGcaagaagtcaggacctttcggccattttatttcctactgtatcact-g-gcTGTCACTAGATAAACATGACCCTTGACAATTTGGGGTGGAGACAAGAGTGTCATGGAACTGCAGTGGTAGCAAAATAACGTTGGGAACCAATTGCCTTTGTCCAGT-GGGGAAAGACATA-----CTTTTCAGAGTCA-GGATTGGGAGAGGAAGGGGAATAACAGCCAAGAATAGATACACAGAATGAGGGAGAAGGGAGGC--GTGCTATCCCATCCCTTCCCTCCTTCCCAC---TCCCTGCTGTTTCCAGCAACAATCCC--ACTCCCCAGCCACCACCAGGGAGTCATTTCTGGCCACTG-AGCACCTCTTG-AGGCAAAAGCTTTTCTGGAGGCCATGGTGATGGAAGAAAT-GGAGGTAATTTCCATGTACTTGGAGTTGAGGCATGCACACGCACATGCGCGCACACACACAAAC----------------CATCTCAGGAT s panTro4.chr1 224994333 547 + 228333871 tagagcaa-cttcttatttagtagataagaaaactgaggcccagtgaagGTAACAGGTTTTCCAGTGACTCCAGAAGCAGGGCAAGAAGTCAGGACCTTTCGGCCATTTTATTTCCTACTGTATCACT-G-GCTGTCACTAGATAAACATGACCCTTGACAATTTGGGGTGGAGACAAGAGTGTCATGGAACTGCAGTGGTAGCAAAATAACATTGGGAACCAATTGCCTTTGTCCAGT-GGGGAAAGACATA-----CTTTTCAGAGTCA-GGATTGAGAGAGGAAGGGGAATAACAGCCAAGAATAGATACATAGAATGAGGGAGAAGGGAGGC--GTGCTATCCCATCCCTTCCCTCCTTCCCAC---TCCCTGCTGTTTCCAGCAACAATCCC--ACTCCCCAGCCACCACCAGGGAGTCATTTCTGGCCACTG-AGCACCTCTCG-AGGCAAAAGCTTTTCTGGAGGCCATGGTGATGGAAGAAAT-GGAGGTAATTTCCATGTACTTGGAGTTGAGGCATGCACACGCACATGCGCACACACACACAAAC----------------CATCTCAGGAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226360286 551 - 229942017 tagagcaa----cttatttagtagataagaaaactgaggcccagtgaagGTAACAGGTTTTCCAATGACTCCAGAAGCAGGGCAAGAAGTCAGGACCTTTCGGCCATTTTATTTCCTACTGTATTACT-G-GCTGTCACTAGATAAACACGACCCTTGACAATTTGGGGTGGAGACAAGAGTGTCAGGGAACTGCAGTGGTAGCAAAATAACGTTGGGAACCAACTGCCTTTGTCCAGTCGGGGAAAGACATA-----CTTTTCAGAGTCA-GGATTGGGAGAAGAAGGGGAATAACAGCCAAGAATAGATACACAGAATGAGGGAGAAGGGAGGT--GTGCTATCCCATCCCTTCCCTCCTTTCCCCATTTCCCTGCTGTTTCCAGCAACAATCCCTACTTTCCCAGCCACCACCAGGGAGTCATTGCTGGCCACTGAAGCACCTCTTGAAGGCAAAAGCTTTTCTGGTGGCCGTGGTGGGGGAAGAAATGGGAGGTAATTTCCATGTACTTGGAGATGAGGCATGCACACGCACATGTGCG--CACACACTAAC----------------CATCTCAGGAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140244690 564 - 143122389 tagagcaa-cttcttatttagtagataagaaaactgaggcccagtgaaggtaacaggttttccagtgactccagaagcaggtcaagaagtcaggacctttcggccattttatttcctactgtatcact-g-gcTGTCACTAGATAAACATGACACTTGACAATTTGGGGTGAAGGCAAGAGTGTCATGGAACCGAAGTGGTAGCAAAATAACATTGGGAACCAGTTGCCTTTGTCCAGT-GGGGAAAGACATA-----CTTTTCAGGGTCA-AGATTGGGAGAAGAAGGGGAATAACAGCCAAGAATAGATACACAGAATGAGGGAGAAGGGAGGCGTGTGCTATCCCATCCCTTCCCTCCTTCCCAC---TCCCTGCTGTCTCCAGCAATAACCCC--ACTTCCCAACCACCACCAGGGAGTCATTGCTGGGCACTG-AGCACCTCTTG-AGGCAAAAGCTTTTCTGGAGGCCATGTTGATGGAAGAAAT-GGAGGGAACTTCCATGTACTTGGACTTGAGGCATGcacacacacatgcacacacacacacacacagacacacacaca-AACATCTCAGGAT i nomLeu3.chr5 I 300 C 0 s rheMac3.chr1 16956219 562 - 229590362 tagagcaa-cttcttatttagtaaataagaaaactgagacccagtgaagCTAACAGGTTTTCCAGTGACTCCAGAAGCAGGGcaagaagtcaggaccttttggccattttatttcctactgtatcact-g-gcTGTCGCTAGATAAACATGAC-CTTGACAATTTGAGGTAGAGGCAAGAGTGTCATGGGACCACAGTGGTAGCACAATAACGTTGGGAACCAGTTGCCTTTGTCCAGT-GGGGAAAGACATA-----CTTTTCAGAGTCA-GGATTGGGGGAGGAAGGGGAATAACAGCCTACAATAGATACAGAGAATGAGGGAGAAGGGAGGT--GTGCTGTCCCATCCTTTCCCTCCTTCCCAC---TCCCTGCTGTTTGCAGCAACAACCCC--ACTCCCCAACCACCACCAGGGAGTCATTGCCGGCCACTG-AGCACCTCTTG-AGGCAAAAGCTTTTCTGGAGGCCATGGAGATGGAAGAAAT-GGAGGTAACTTCCCTGTACCTGGAGTTGAGGCATGcacacgcgcatgctcacacacacacacacacacacacacacacaACATCGCAGGAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223719181 562 - 227556264 tagagcaa-cttcttatttagtaaataagaaaactgagacccagtgaagCTAACAGGTTTTCCAGTGACTCCAGAAGCAGGGCAAGAAGTCAGGACCTTTTGGCCATTTTATTTCCTACTGTATCACT-G-GCTGTCGCTAGATAAACATGAC-CTTGACAATTTGAGGTAGAGGCAAGAGTGTCATGGGACCACAGTGGTAGCACAATAACGTTGGGAACCAGTTGCCTTTGTCTAGT-GGGGAAAGACATA-----CTTTTCAGAGTCA-GGGTTGGGGGAGGAAGGGGAATAACAGCCTACAATAGATACAGAGAATGAGGGAGAAGGGAGGT--GTGCTGTCCCATCCTTTCCCTCCTTCCCAC---TCCCTGCTGTTTGCAGCAACAACCCC--ACTCCCCAACCACCACCAGGGAGTCATTGCCGGCCACTG-AGCACCTCTTG-AGGCAAAAGCTTTTCTGGAGGCCATGGAGATGGAAGAAAT-GGAGGTAACTTCCCTGTACTTGGAGTTGAGGCATGcacacgcacatgcgcacacacacacacacacacatatacacacaacaTCGCAGGAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16768870 562 - 220367699 TAGAGCAA-CTTCTCATTtagtaaataagaaaactgagacccgGTGAAGGTAACAGGTTTTCCAGTGACTCCAGAAGCAGGGCAAGAAGTCAGGACCTTTTGGCCATTTTATTTCCTACTGTATCACC-G-GCTGTCGCTAGATAAACATGAC-CTTGACAATGTGAGGTGGAGGCAAGAGTGTCATGGGACCACAGTGGTAGCACAATAATGTTGGGAACCAGTTGCCTGTGTCCAGT-GGGGAAAGACATA-----CTTTTCAGAGTCA-GAACTGGGGGAGGAAGGGGAATAACAGCCTAGAATAGATACAGAGAATGAGGGAGAAGGGAGGT--GTGCTATCccatcctttccctccttcccac---tcCCTGCCGTTTCCAGCAACAACCCC--ACTCCCCAACCACCACCAGGGAGTCATTGCTGGCCACTG-AGCACCTCTTG-AGGCAAAAGCTTTTCTGGAGGCCATGGAGATGGAAGAAAT-GGAGGTAACTTCCCTGTACTTGGAGTTGAGgcatgcacacgcacatgcacacacacacacacacacacacacacacacaacatcgCAGGAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82566841 546 + 85787240 tagagcaa-cttcttgtttagtaaataagaaaactgagacccagtgaagGTAACAGGTTTTCCAGTGACTCCAGAAGCAGGGcaagaagtcaggaccttttggccattttatttcctactgtatcacc-g-gcTGTCGCTAGATAAACATGAC-CTTGACAATTTAAGGTAGAGGCAAGAGTGTCATGGGACCACAGTGGTAGCACAATAACGTTGGGAACCAGTTGCCTTTGTCCAGT-GGGGAAAAACATA-----CTTTTCAGAGTCA-GGATTGGGGGAGGAAGGGGAATAACAGCCTAGAATAGATACAGAGAATGAGGGAGAAGGGAGGT--GTGCTGTCCCATCCTTTCCCTCCTTCCCAC---TCCCTGCTGTTTGCAGCAACAACCCC--ACTCCTCAACCACCACCAGGGAGTCATTGCTGGCCACTG-AGCACCTCTTG-AGGCAAAAACTTTTCTGGAGGCCATGGAGATGGAAGAAAT-GGAGGTAACTTCCCTGTACTTGGAGTTGAGGcatgcacacgcacatg----------------cacacacacacacacaacaTCGCAGGAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14250053 533 - 49578535 tagagcaa-cttcttatttagcaaataagaaaactgaggcccagtgaggGTTACAGGTTTTCCAGTGACTCCGGAAGCGAGGCAAGCAGTCAGGGCCTTGAAGCTGTTTCA-TTCGGGCTGTATCAGTGG-GCTGTCACTAGACAAACATGACCCTTGACGATTTGGGGTGGAAGCAAGAGTGTCCTGGAACCAGAGTAGTAGCAAAACGATGTTGGGAACCAGTTGCCTTTATCCAGT-GGGTGAAGACATA-----CTTTTCCGAGCCA-GGATTGGGAGAGGAAGGGGAATAACAGTCAAGAATAG----ACAGAAAAGGGGAGAAGGGAGGC--TCGCCATCCCATCCCTTCCCTCCTTCCCGC---TCCCAGCTGTTGCCAGCAGCAACCCC--A-TCCCCAGCCACCACCAGGGAGTCCTTTCTGGCCGTCG-AGCA---CTTG-AGGCAAAAGCTTTTCTGGAGGCCATGGTGATGGGAGAAAC-AGAGGTGACTTCCTCGTACTTAGAGCTGAAGCGTGTGCAAGCCCCCGCGCACACACAG----------------------CACCTCAGGAC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36397109 512 + 80974532 tagagcaaccttctcacttagtgaacaaggtaactgaggcccccagggggtaagagatcttcccaTGCCTACCAAGTCAAGCCCAGAAGTCAGGAGCATGAAGCCATTTTATTTT---TTGTCTCACT-GAGCTGCCACTAGGTATACATGACCTTTAAAATTTGGGGGTGGAGACAAGAATGTGATGGGGCCGCAGTGGTAGCAAAATAACCATGGGATCCAATTGTCTTCATCCAGT-CGAGGAGGACCTGCTTCCCTTTGCAGAGTCACAGATGGGAAGGAGGACAGGTGGAGCAGCCAAGAGCAGACACACA------GGGAGATGGCAGGC--------------------TCTCCGTCATGC---TCCCTGCTGGTGCCAGCAGCTCCCCT-GACCCTCTACCCA--------GAGTCACTG-TGGCCACTG-AGCACTGCTTG-AGGCAAAAGCTTTTTGGGAGGCCATGGTGATGGAAGAATT-TGCGGTAACTTCAATGTACTTGGAGCTGAAATACG-------------GCATACACACA-----------ACATGGGAAACACCTCAACAT i canFam3.chr7 C 0 I 406 e mm10.chr1 178824335 584 + 195471971 I a score=1345199.000000 s hg38.chr1_KI270759v1_alt 239371 471 + 425601 CCTCTGCCCCTAGAGCATTTCCTGATACACAG-CAAtt---ttttt----------------------tttt------ttt----tt---tgagacagagtctcactctgtcccccaggctggagtacagtggtacaatcttggctcactgcaacctccacctccggggttcaagtgattctcttgcctcagcctcccaagtagctgggattacaggcatgc-gccaccaca-cccagttaa-tttttgtatttttagtagagacggggtttctccatcttggcgaggctggtctcaaactcctgacctccagtgatctgcccacctcggcctcccaaagtgctaggattacaggcatgagccaccatgcccagccCAcagcaaatatttattaagcacctactaggtgttaggtactgtgctgagcggtaggcttaggtttgaaataatggacaaggcagagcacctgtccttaaggtacttataacttagtgCTTTATTCCAGTCAGTCTT s panTro4.chr1 224994880 470 + 228333871 CCTCTGCCCCTAGAGCATTTCCTGATACACAG-CAAtt---ttttt----------------------tttt------ttt----tt----gagacagggtctcactccgtcccccaggctggagtacagttgtacaatcttggctcactgcaacctccacctccggggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggcatgc-gccaccaca-cccagttaa-tttttgtatttttagtagagacggggtttctccatcttggcgaggctggtctcaaactcctgacctccagtgatctgcccacctcggcctcccaaagtgctaggattacaggcatgagccaccatgcccggccCAcagcaaatatttattaagcacctactatgtgtcaggtactgtgctgagcagtaggcttaggtttgaaataatggacaaggcagagcacctgtccttaaggtacttataacttagtgCTTTATTCCAGTCAGTCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226360837 476 - 229942017 CCTCTGCCCCTAGAGCATTTCCTGATACACAG-CAAtt---ttttt----------------------tttt------ttt----ttttgtaagacagagtctcactctgtctcccaggctggagtacagtggtacaatcttggctcactgcaacctccacctcccgagttcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcatgc-gccaccacaccccagctaattttttgtatttttagtagagatggggtttctccgtcttggccaggctggtctcaaactcctgacctccagtgatctgcccacctcggcctcccaaagtgctaggattacaggcatgagccaccatgcccggccCAcagcaaatatttattaagcacctactatgtgtcaggtactgtgctgagcagtaggcttaggtttgaaataatggacaaggcagagcacctgtccttatgccacttataacttagtgCTTTATTCCAGTCAGTCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140245254 468 - 143122389 CCTCTGCCCCTAGAGCATTTCCTGATATGCAG-CAAtt---ttttt----------------------tttt------ctt----------gagacagcgtctcgctctgtcccccaggctggagtgcagtggtacaatcttggctcacttgaacctccacctcccgggttcaagtgattctcctgcctcagcctcccgagtagctgggatttcaggcaccc-accaccaca-cccagctca-tttttgtacttttagtagagatggggtttctccatcttggccaggctggtctcaaactcctgacctccagtgatctgcccacctccgcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccCAcagcaaatatttattaagcacctactatgtgtcaggtagtgtgctgagcagtaggcttaggtctgaaataatggacaaggcagagcacctgtccttatggcatttataatttagtgCTTTATTCCAGTCAGTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16956781 496 - 229590362 CCTCTGCCCCTCGAGTGTTTCCTGATATACAG-CAATA---TTTTTTGTTTGtttg-tttgtttttgttttt------tttgg--ttttttgagacagagtctcgctctgt-ccccaggctggagtacagtggtacactcttggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtatgc-accaccaca-cccagctaa-tttttgtgtttttagtagaaatggggtttctcgatcttgaccaggctggtgtcaaactactggcctccagtgatctgcccacctcggcctcccaaagtgttgggattacaggcgtgagccaccatgcctggccCAcagcaaatatttactaagcacctcctatgtgtcaggtaccgtgctgagcagtaggcttaggtttgaaataatggacaaggcagagcacctgtccttacggcatttaaaacttagtgCTTTATTCCAGTCAGTCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223719743 496 - 227556264 CCTCTGCCCCTCGAGTGTTTCCTGATACACAG-CAATA---TTTTTTGTTTGtttg-tttgtttttg-tttt------tttgg--ttttttgagacagagtctcgctctgtcccccaggctggagtacagtggtacactcttggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtatgc-accaccaca-cccagctaa-tttttgtgtttttagtagaaatggggtttctccatcttgaccaggctggtctcaaactactgacctccagtgatctgcccacctcggcctcccaaagtgttgggattacaggcgtgagccaccatgcctggccCAcagcaaatatttactaagcacctcctatgtgtcaggtaccgtgctgagcagtaggcttaggtttgaaataatggacaaggcagagcacctgtccttacggcatttataacttagtgCTTTATTCCAGTCAGTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16769432 503 - 220367699 CCTCTGCCCCTCGAGTGTTTCCTGATACAcag-caatg---ttttttgtttgtttg-tttgtttttgttttttttttgtttgt--ttttttgagacagagtctcgctctgtcccccaggctggagtacagtggtacaatcttggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtatgc-accaccaca-cccagctaa-tttttgtgtttttagtagaaatggggtttctccatcttgaccaggctggtctcaaactactgacctccagtgatctgcccacctcggcctcccaaagtgttgggattacaggcgtgagccaccatgcctggcccacagcaaatatttactaagcacctcCTATGTGTCAGGTACCGTGCTGAGCAGTAGGCTTAGGTTTGAAATAATGGACAAAGCAGAGCACCTGTCCTTACGGCATTTATAACTTAGTGCTTTATTCCAGTCAGTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82567387 502 + 85787240 CCTCTGCCCCTCGAGTGTTTCCTGATACACAG-CAATGgttttttttgtttgtttgttttgtttttg-tttt------tttggttttttttgagacagagtctcgctctgtcccccaggctggagtacagtggtacaatcttggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggtatgc-accaccaca-cccagctaa-tttttgtgtttttagtagaaatggggtttctccatcttgaccaggctggtctcaaactactgacctccagtgatctgcccacctcggcctcccaaagtgttgggattacaggcgtgagccaccacgcctggccCAcagcaaatatttactaagcacctcctatgtgtcaggtaccgtgctgagcagtaggcttaggtttgaaataatggacaaggcagagcacctgtccttacggcatttataacttagtgCTTTATTCCCGTCAGTCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14250586 480 - 49578535 GCGCTGCCCCTACAGCATTTCCTCATACACAGAAAATG---tttttccttt-----------------tact------ttt----tcttttgagacagagtctccctctgtcacccaggctgcagtgcaatagcgcaatctcggctccctgcaacctccgcctccctggttcaagcgacattcctgcctcagcctcccgagtagctgggattacaggcatgctgccaccaca-cctggctga-tttttgtatttttagtagagacagggtttcactattttggttaggctggtcttgaactcctgacttccagtaatccacctacctcagcctcccaaagtgctaggattacaggcatgaaccactgtgcctggccCAcagcaaatatttattaagcacctacggtgtgtcaggtagtatggtgagccggaggcttaggtttgcactaatgggcaaggcag-gtgcctgttcttatggcatttataacttagtgCTTTATTCCAGTCAATCCT i calJac3.chr19 C 0 C 0 e mm10.chr1 178824335 584 + 195471971 I e canFam3.chr7 36397621 406 + 80974532 I a score=61493.000000 s hg38.chr1_KI270759v1_alt 239842 16 + 425601 AGAAAGCTCACCAATT s panTro4.chr1 224995350 16 + 228333871 AGAAAGCTCACCAATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226361313 16 - 229942017 AGAAAGCTCACCAATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140245722 16 - 143122389 AGaaagctcaccaatt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16957277 16 - 229590362 AGaaagctcaccaatt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223720239 16 - 227556264 AGaaagctcaccaatt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16769935 16 - 220367699 AGAAAGCTCACCAATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82567889 16 + 85787240 AGaaagctcaccaatt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14251066 16 - 49578535 ATaaatctcaccaatc i calJac3.chr19 C 0 C 0 s canFam3.chr7 36398027 16 + 80974532 AGAAATCTCACCAATT i canFam3.chr7 I 406 C 0 e mm10.chr1 178824335 584 + 195471971 I a score=1717204.000000 s hg38.chr1_KI270759v1_alt 239858 432 + 425601 TGGGCCAATATGAAGGACAATCTGA--TTTAAGGAAAAATCAGGATTGTAGGCTTAAAATGATTCTGTCTCACTTTGAAGTTACATAAACAAATTA-TGCTACTAAGT-AGTCTTATAGAGATATTCTTAATAAGCAGATAAAGATGATTAGTGGATCAAAGCAGCTTAGTCCCCATTCATATTTCACTGATTTGGCTTATATGTAAATGATGATTCTAATCTGTTTGAAAACGGTTGCT--TCTCCTAAGTCAGT------TCTTCATGAAATTTGTTTGCACAATTAATTAACAT-CCATGTTTAAGGTTCATTTGTTAGTATGTCACAGCTTAATGTCAGAGCTTTCTGTCTTGG-ATTAGAAGCTTCCAGAGCAAAGCATGTTATCTGTTTGACTTGCTAAGTATATGGCTCTGCAGCCACA-CCATGG-TGCATCAACATTTT s panTro4.chr1 224995366 438 + 228333871 TGGGCCAATATGAAGGACAATCTGA--TTTAAGGAAAAGTCAGGATTGTAGGCTTAAAATGATTCTGTCTCACTTCCAAGTTACATAAACAAATTA-TGCTACTAAGT-AGTCTTATAGAGATATTCTTAATAAGCAGATAAAGATGATTAGTGGATCAAAGCAGCTTAGCCCCCATTCATATTTCACTGATTTGGCttatatgtaaatgatgattctaatctgtctgaaaacggttgct--tctcctaagtcagtcaacgttcttcatgaaatttgtttgcacaattaattAACAT-CCATGTTTAAGGTTCATTTGTTAGTATGTCACAGCTTAATGTCAGAGCTTTCTGTCTTGG-GTTAGAAGCTTCCAGAGCAAAGCATGTTATCTGTTTGACTTGCTAAGTATATGGCTCTGCAGCCACA-CCATGG-TGCATCAACATTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226361329 442 - 229942017 TGGGCCAATATGAAGGACAATCTGGATTTAAAGGAAAAGTCAGGATTGTAGGCTTAAAATGAT--TGTCTCACTTTCAAGTTATATAAAGAAATTA-TGCTACTAAGTAAGTCTTATAGAGATATTCTTAATAAACAGATAAAGATGATTAGTGGATCAAAGCAGCTTAGTCCCCATTTATATTGCACTGATTTGGCttatatgtaaatgatgcttctaatctgtttgaaaacggttcct--tctcctaagtcagtcaatgttcttcaagaaatttatttgcacaattaattAACATCCCATGTTTAAGGTTCATTTGTTAGTATGTCCCAGCTTAATGTCAGAGCTTTCTGTCTTGGCATTAGAAGCTTCCAGAGCAAAGCATGTTATCTGTTTGACTTGCTAAGTATATGGCTCTGCAGCCACACCCATGG-TGCATCAGCATTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140245738 438 - 143122389 tgggccaatatgaaggacagtgtga--tttaaggaaaagtcaggattgtaggcttaaaatgattcggtctcactttcaagttctataaagaaatta-tgctactaagt-agtcttatagagatattcttaataaacagataaagatgattagtggatcaaagcagcttagtccccatttatatttcactgacttggcttatatgtaaatgatgcttctaatctgtttgaaaacggttcct--tctcctaagtcagtcaacgttcttcatgaaatttgtttgcacaattaattGACAT-CTATGTCTAAGGTTCATTTGTTAGTATGTCAGAGCTTAATGTCAGAGCTTTTTGTCTTGG-AATACAGGCTTCCAGAGCAAAGCATGTTATCTGTTTGACTTGCTAAGTATATGGCTCTGCAGCGACA-CCATGG-TGCATCAGCATTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16957293 438 - 229590362 tgggccaatatgaaagacaatctgg--tttaaggaaaagtcaggattgtaggcttaaaatgattctgtctcactttcaagttacataaagaaatta-tattactgagt-agtcttacagagatattcttaataaacagataaagatgattagtgaatcaaagcagcttagtccccatttatacttcactgatttggcttatgtgtaaatgatgcttctaatctctttgaaaacggttcct--tctcctaagtcagtcaacgttcttcatgaaatttgtttgcacaattatttAACAT-CCATGTTTAAGGTTCATTTGTTGGTATGTCACAGCTTAATGTCAGAGCTTTTTGTCTTGG-ATTACAAGCTTTCAGAGCAAAGCATGTTATCTGTTTGACTTGCTAAGTGTATGGCTCTGCAGCCACA-TCATGG-TGCATCATCATTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223720255 438 - 227556264 tgggccaatatgaaagacaatctgg--tttaaggaaaagtcaggattgtaggcttaaaatgattctgtctcactttcaagttacataaagaaatta-tactactgagt-agtcttacagagatattcttaataaacagataaagatgattagtgaatcaaagcagcttagtccccatttatacttcactgatttggcttatgtgtaaatgatgcttctaatctctttgaaaacggttcct--tctcctaagtcagtcaacgttcttcatgaaatttgtttgcacaattatttAACAT-CCATGTTTAAGGTTCATTTGTTGGTATGTCACAGCTTAATGTCAGAGCTTTTTGTCTTGG-ATTACAAGCTTTCAGAGCAAAGCATGTTATCTGTTTGACTTGCTAAGTGTATGGCTCTGCAGCCACA-TCATGG-TGCATCATCATTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16769951 438 - 220367699 TGGGCCAATATGAAGGACAGTCTGG--TTTAAGGAAAAGTCAGGATTGTAGGCTTAAAATGATTCTGTCTCACTTTCAAGTTACATAAAGAAATTA-TACTACTAAGT-AGTCTTATAGAGATATTCTTAATAAACAGATAAAGATGATTAGTGGATCAAAGCAGCTTAGTCCCCATTTATATTTCACTGATTTGGCTTATGTGTAAATGATGCTTCTAATCTCTTTGAAAACGGTCCCT--TCTCCTAAGTCAGTCAATGTTCTTCATGAAATTTGTTTGCACAATTATTTAACAT-CCATGTTTAAGGTTCATTTGTTGGTATGTCACAGCTTAATGTCAGAGCTTTTTGTCTTGG-ATTACAAGCTTTCAGAGCAAAGCATGTTATCTGTTTGACTTGCTAAGTGTATGGCTCTGCAGCCACA-TCATGG-tgcatcatcatttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82567905 438 + 85787240 tgggccaatatgaaggacaatctgg--tttaaggaaaagtcaggattgtaggcttaaaatgattctgtctcactttcaagttacataaagaaatta-tactactaagt-agtcttacagagatattcttaataaacagataaagatgattagtggatcaaagcagcttagtccccatttatatttcactgatttggcttatgtgtaaatgatgcttctaatctctttgaaaacggttcct--tctcctaagtcagtcaacgttcttcatgaaatttgtttgcacaattatttAACAT-CCATGTTTAAGGTTCATTTGTTGGTATGTCACAGCTTAATGTCAGAGCTTTTTGTCTTGG-ATTACAAGCTTTCAGAGCAAAGCATGTTATCTGTTTGACTTGCTAAGTGTATGGCTCTGCAGCCACA-TCATGG-TACATCATCAtttt i chlSab2.chr25 C 0 I 305 s calJac3.chr19 14251082 433 - 49578535 tgggccaatacgaaggacagtctga--tttaaggaaaagtcaggattataggctttaaatgattcggactcactttcaagttacataaagaaatta-tgctactaagt-agtcttatagaaatattcttaataaacagataaagatgattaggagatcacagcagcttagtccgcgtttatatttcactgctttggcttatatgtaaatgatgcttctaatctgtttgaaaatggttcct-------taagtcagcaaacgttcttcacgaaatttgtttgcacagttaattAACAT-CCATGTTTAAGGTTCATTTGTTGGTATGTCACAGCTTAATGTCAGAGCTTTTCGTCTTGG-GTTACATGTTTCCAGAGCCAAGCATCTT-TCTGTTTGATTTGCTACATATATGGCTCTGCAGCCACA-CCGTGGAGGCATCAACATTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178824919 409 + 195471971 TAGACCAATATGAGGGAC--CTTGA--CTTAAGGGAAAGTCATAATTACTGACTTACCATAGCTGT-----------AAGATGTACAAAGAACTAACTACTATTAACT-GGCTTTGTAAAGACCGTCTTAATAGACAGATTCAAGTGATTAGTGGATCAAAGCAGCTTAGCCCCCATTTATATCTCATTGATTTGGCttatatgtaaatgatacttgtaatctgtttgaaaatggctccttctctcctaagtcagtaagcgctctctgtgaaatctgtttgcacaattaattAACAG-CCGTGTTCAAGGTTCATTTCTTAGTGTGTCACGATGTAATGACAGACCTCTTCATCTGGG-GTCGCAAGTTCCTAGAGAAAAGTATGTTATCTGTGTAACACTTGTGTTTTCTGGTTCTGTGGCTACA-T-------------------- i mm10.chr1 I 584 C 0 s canFam3.chr7 36398043 418 + 80974532 TTTACCAAAAT-AAGGACAATCTGA--TTTAAGGAAAAGTCAGAATTACAGACTTAAAATAAC-----------TTCAAGTAACATA---AAACTA----TACTAAGT-GGTCTTGTAGAGACATTCTTAATGAATAGATAAAAATGATTAATGGATGAAAGCAGCTTAGTCCCCATTTATATTTCATTGATTTAGCTTATATGTAAATGATACCTCTAATCTATTTGACAATGGCTCCT--TCTCCTCACTCAGTAAACGCTCTTCGTAAAATTTGTTTGCACAATTAATTAACAT-CCATGTTTAAGGTTCATTTGTTAGT-TGTCACAGCTTAATGTCAGAGCTCTTTGTCTTGG-ATTACAAGCTTCTAGAGCAAATCACGTTATCTGTTTAACTCACTGCGCGTGTGGCTCTGCCACCACG-CCTCCG-TGTGT-AGCACTTT i canFam3.chr7 C 0 C 0 a score=147279.000000 s hg38.chr1_KI270759v1_alt 240290 43 + 425601 TAAAAGTGAGAATGGTAATGGTGACAGTCATATTGGATTGATG s panTro4.chr1 224995804 43 + 228333871 TAAAAGTGAGAATGGTAATGGTGACAGTCATACTGGATTGATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226361771 43 - 229942017 TAAAAGTGAGAATGGTAATGGTGACAGTCATATTGGATTGATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140246176 43 - 143122389 TAAAAGTGAGAATGGTAATGGTGACAGTCATATTGGATTGATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16957731 42 - 229590362 TAAAAGTGAGAA-GGTAATGGTGATGGTCATATTGGATTGATA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223720693 42 - 227556264 TAAAAGTGAGAA-GGTAATGGTGATGGTCATATTGGATTGATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16770389 43 - 220367699 taaaagtgagaatgGTAATGCTGACGGTCATATTGGATTGATA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82568648 43 + 85787240 TAAAAGTGAGAATGGTAATGCTGACGGTCATATTGGATTGATA i chlSab2.chr25 I 305 C 0 s calJac3.chr19 14251515 43 - 49578535 AAAAAGTGGGGATGGTCATGGTGACAGTCACATTAGATTCATG i calJac3.chr19 C 0 C 0 s mm10.chr1 178825328 43 + 195471971 TTAAAGCAAGGACAGGGATGGCAGCTGTCACACTGGATTGGTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36398461 40 + 80974532 TGAAGGCGAGACT-GTAATAGTGACAGTCACATCGG--TGATG i canFam3.chr7 C 0 I 3473 a score=24282.000000 s hg38.chr1_KI270759v1_alt 240333 6 + 425601 ACAATC s panTro4.chr1 224995847 6 + 228333871 ACAATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226361814 6 - 229942017 ACAATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140246219 6 - 143122389 ACAATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16957773 6 - 229590362 ACAATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223720735 6 - 227556264 ACAATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16770432 6 - 220367699 ACAATC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82568691 6 + 85787240 ACAATC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14251558 6 - 49578535 ACAATC i calJac3.chr19 C 0 C 0 s mm10.chr1 178825371 6 + 195471971 ACAGTC i mm10.chr1 C 0 I 772 e canFam3.chr7 36398501 3473 + 80974532 I a score=17028.000000 s hg38.chr1_KI270759v1_alt 240339 5 + 425601 AACCT s panTro4.chr1 224995853 5 + 228333871 AACCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226361820 5 - 229942017 AACCT i ponAbe2.chr1 C 0 I 1239 s nomLeu3.chr5 140246225 5 - 143122389 AACCT i nomLeu3.chr5 C 0 I 1446 s rheMac3.chr1 16957779 5 - 229590362 AACCT i rheMac3.chr1 C 0 I 1307 s macFas5.chr1 223720741 5 - 227556264 AACCT i macFas5.chr1 C 0 I 1446 s papAnu2.chr1 16770438 5 - 220367699 AACCT i papAnu2.chr1 C 0 I 1693 s chlSab2.chr25 82568697 5 + 85787240 AACCT i chlSab2.chr25 C 0 I 1280 s calJac3.chr19 14251564 5 - 49578535 AACCT i calJac3.chr19 C 0 I 2349 e mm10.chr1 178825377 772 + 195471971 I e canFam3.chr7 36398501 3473 + 80974532 I a score=273.000000 s hg38.chr1_KI270759v1_alt 240344 3 + 425601 TTT s panTro4.chr1 224995858 3 + 228333871 TTT i panTro4.chr1 C 0 C 0 e mm10.chr1 178825377 772 + 195471971 I e canFam3.chr7 36398501 3473 + 80974532 I e calJac3.chr19 14251569 2349 - 49578535 I e rheMac3.chr1 16957784 1307 - 229590362 I e chlSab2.chr25 82568702 1280 + 85787240 I e papAnu2.chr1 16770443 1693 - 220367699 I e macFas5.chr1 223720746 1446 - 227556264 I e nomLeu3.chr5 140246230 1446 - 143122389 I e ponAbe2.chr1 226361825 1239 - 229942017 I a score=483.000000 s hg38.chr1_KI270759v1_alt 240347 4 + 425601 ACCC s panTro4.chr1 224995861 4 + 228333871 ACCC i panTro4.chr1 C 0 C 0 s mm10.chr1 178826149 4 + 195471971 ACAT i mm10.chr1 I 772 C 0 e canFam3.chr7 36398501 3473 + 80974532 I e calJac3.chr19 14251569 2349 - 49578535 I e rheMac3.chr1 16957784 1307 - 229590362 I e chlSab2.chr25 82568702 1280 + 85787240 I e papAnu2.chr1 16770443 1693 - 220367699 I e macFas5.chr1 223720746 1446 - 227556264 I e nomLeu3.chr5 140246230 1446 - 143122389 I e ponAbe2.chr1 226361825 1239 - 229942017 I a score=64321.000000 s hg38.chr1_KI270759v1_alt 240351 23 + 425601 TTTTAGGGTAGAAGTCATTCAGT s panTro4.chr1 224995865 23 + 228333871 TTTTAGGGTAGAAGTCATTCAGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140247676 23 - 143122389 TTTTAGGGGAGAAGTCATTCAGT i nomLeu3.chr5 I 1446 C 0 s rheMac3.chr1 16959091 23 - 229590362 TTTTAGAGTAGAAGTCATTTAGT i rheMac3.chr1 I 1307 C 0 s macFas5.chr1 223722192 23 - 227556264 TTTTAGAGTAGAAGTCATTTAGT i macFas5.chr1 I 1446 C 0 s papAnu2.chr1 16772136 23 - 220367699 TTTTAGAGTAGAAGTCATTTAGT i papAnu2.chr1 I 1693 C 0 s chlSab2.chr25 82569982 23 + 85787240 TTTTAGGGTAGAAGTCATTTAGT i chlSab2.chr25 I 1280 C 0 s calJac3.chr19 14253918 23 - 49578535 TTTTAGGGTAGAAGTCGTTCAGT i calJac3.chr19 I 2349 C 0 s mm10.chr1 178826153 23 + 195471971 CTTCAGGGAAGAAGTCCTTCAAT i mm10.chr1 C 0 C 0 e canFam3.chr7 36398501 3473 + 80974532 I e ponAbe2.chr1 226361825 1239 - 229942017 I a score=194162.000000 s hg38.chr1_KI270759v1_alt 240374 69 + 425601 TACTAACTCCTTGTGACACTGTATGGAAGAGAAAGACAAGATTTCTGTTCAGTTTACATTCTTCTTAGA s panTro4.chr1 224995888 69 + 228333871 TACTAACTCCTTGTGACACTGTATGGAAGAGAAAGACAAGATTTCTGTTCGGTTTACATTCTTCTTAGA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140247699 69 - 143122389 TACTAAGTCGTTGTGACACTGTATGGAAGAGAAAGACAAGATTTCTGTGCAGTTTACTTTCTGCTTATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16959114 69 - 229590362 TACTAAGTCCTTGTGACACTGTGTGGAAGAGAAAGACAAGATTTCTCTTCAGTTTACATTCTGCTTATA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223722215 69 - 227556264 TACTAAGTCCTTGTGACACTGTGTGGAAGAGAAAGACAAGATTTCTCTTCAGTTTACATTCTGCTTATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16772159 69 - 220367699 TACTAAGTCCTTGTGACACTGTGTGGAAGAGAAAGACAAGATTTCTCTTCAGTTTACATTCTGCTTATA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82570005 69 + 85787240 TACGGAGTCCTTGTGACACTGTGTGGAAGAGAAAGACAAGATTTCTGTTTCGTTTACATTCTGCTTATA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14253941 69 - 49578535 TACTAAATCCTTGTGACATTGTATGGAAGAGAAAGGCAAGATTTCTGTTCTGTTTACATTCTGCTTGTA i calJac3.chr19 C 0 C 0 s mm10.chr1 178826176 59 + 195471971 TACTAGATCCTTGTAACACTAT----------AAGACACAATTCCTGCCCTGCTGGTGTCCTTTTTACA i mm10.chr1 C 0 I 3 s canFam3.chr7 36401974 65 + 80974532 TATTAAAACCCTGTGACACTGTACGGAAGAAGAAGCCAAGATT--TGTTCAACTGACATTCTGATTA-- i canFam3.chr7 I 3473 C 0 e ponAbe2.chr1 226361825 1239 - 229942017 I a score=66671.000000 s hg38.chr1_KI270759v1_alt 240443 17 + 425601 GGAAGAGGAGAACAAGA s panTro4.chr1 224995957 17 + 228333871 GGAAGAGGAGAACAAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226363064 17 - 229942017 GGAAGAGGAGAACAAGA i ponAbe2.chr1 I 1239 C 0 s nomLeu3.chr5 140247768 17 - 143122389 GGAAGAGGAGAACAAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16959183 17 - 229590362 GGAAGAGGAGAACAAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223722284 17 - 227556264 GGAAGAGGAGAACAAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16772228 17 - 220367699 GGAAGAGGagaacaaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82570074 17 + 85787240 GGAAGAGGAGAACAAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14254010 17 - 49578535 AGAAGGGGGAAACAAGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178826238 17 + 195471971 AGAGGATAGCAATAAGA i mm10.chr1 I 3 C 0 s canFam3.chr7 36402039 16 + 80974532 -CAAGACAAAAACAAGA i canFam3.chr7 C 0 I 14 a score=38663.000000 s hg38.chr1_KI270759v1_alt 240460 15 + 425601 TTTTT-AAAATTAGAT s panTro4.chr1 224995974 15 + 228333871 TTTTT-AAAATTAGAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226363081 16 - 229942017 TTTTTCAAAATTAGAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140247785 15 - 143122389 TTTTT-AAAATTAGAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16959200 15 - 229590362 TTTTA-AAAATTAGAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223722301 15 - 227556264 TTTTA-AAAATTAGAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16772245 15 - 220367699 tttta-aaaattagat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82570091 15 + 85787240 TTTTA-AAAATTAGAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14254027 15 - 49578535 TTTTT-AAAATTAGAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178826255 12 + 195471971 TTT---AAATTAAGG- i mm10.chr1 C 0 C 0 e canFam3.chr7 36402055 14 + 80974532 I a score=12074.000000 s hg38.chr1_KI270759v1_alt 240475 5 + 425601 TAAAA s panTro4.chr1 224995989 5 + 228333871 TAAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226363097 5 - 229942017 TAAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140247800 5 - 143122389 TAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16959215 5 - 229590362 TAACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223722316 5 - 227556264 TAACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16772260 5 - 220367699 taaca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82570106 5 + 85787240 TAAAA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178826267 5 + 195471971 TAAGA i mm10.chr1 C 0 I 7 e canFam3.chr7 36402055 14 + 80974532 I e calJac3.chr19 14254042 0 - 49578535 C a score=325326.000000 s hg38.chr1_KI270759v1_alt 240480 165 + 425601 TACTGTGGTTTT----------------TTGTTTGTTTGGTTTTGGttttgttttttttgttttttg-ttttttgagtcagagtttcactcttgttgcccaggctggagtgcaatggcacgatcttggctcactgcaacctccacctcctgggctcaagtgattctcctgcctcagcctccc s panTro4.chr1 224995994 149 + 228333871 TACTGTGGTttt----------------ttgtttgtttggtttt-------------ttgtttttt----ttttgagacagagtttcactcttgttgcccaggctggagtgcaatggcacgatcttggctcactgcaacctccacctcctgggctcaagtgattctccggcctcagcctccc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226363102 148 - 229942017 TACTGTGGTTtt----------------ttgtttgttttgttt--------------ttgtttttg----ttttgagacagagtttcgctcttgttgccctggctggagtgcaatggcgcgatctcggctcaccgcaacctccacctcctgggctcaagtgattctcctgcctcagcctccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140247805 172 - 143122389 TACTGTAGGTTTTTAAAATTTTTTTTGGTTGTTTGttttgtttttgttt--------ttattttta--ttttttgagacagagtttcgctcttgttgcccaggctggagtgcaatggcacgatctcggctcactgcaacctccgcctcccgggctcaagtgattctcctgcctcggcctccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16959220 155 - 229590362 TATTGTGGTGTT----------------TGTTTTGttttgttttta-----------ttattttttatttttttgagacggagtttcactctcgttgcccaggctggagtgcaatggtgcgatcttggctcaccgcaacctccacctcctgggctcaagtgattctcctgcctcagcctccc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223722321 155 - 227556264 TATTGTGGTGTT----------------TGTTTTGttttgttttta-----------ttattttttatttttttgagacggagtttcactctcgttgcccaggctggagtgcaatggtgcgatcttggctcaccgcaacctccacctcctgggctcaagtgattctcctgcctcagcctccc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16772265 155 - 220367699 tattgtggtgtt----------------tgttttgttttgctttta-----------ttattttttatttttttgagacggagtttcactgtcgttgcccaggctggagtgcaatggtgcgatcttggctcaccgcaacctccacctcctgggctcaagtgattctcctgcctcagcctccc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82570111 155 + 85787240 TATTGTGGTGTT----------------TGTTTTGttttgttttta-----------ttactttttattttttcgagacggagtttcactctcgttgcccaggctggagtgcaatggtgcgatcttggctcaccgcaacctccacctcctgggctcaagtgattctcctgcctcagactccc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178826272 7 + 195471971 I e canFam3.chr7 36402055 14 + 80974532 I e calJac3.chr19 14254042 0 - 49578535 C a score=30927.000000 s hg38.chr1_KI270759v1_alt 240645 18 + 425601 TAAAATACTG-TTTTTAAA s panTro4.chr1 224996143 18 + 228333871 TAAAATACTG-TTTTTAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226363250 19 - 229942017 TAAAATACCGTTTTTTAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140247977 18 - 143122389 TAAAATACTG-TTTTTAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16959375 13 - 229590362 TAAAATACTA-TTT----- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223722476 13 - 227556264 TAAAATACTG-TTT----- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16772420 13 - 220367699 taaaatactg-ttt----- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82570266 13 + 85787240 TAAAATACTG-TTT----- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14254042 17 - 49578535 TAAAATACTG-GTT-TTGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36402069 18 + 80974532 TAAAATAAGA-TTTTTAAA i canFam3.chr7 I 14 C 0 e mm10.chr1 178826272 7 + 195471971 I a score=1570482.000000 s hg38.chr1_KI270759v1_alt 240663 522 + 425601 AAAGGTACT-CGGTAGCTGTTA-TTCACTCAGTCAACAAGTAGAAACAGTGGGGATAGCTCTCTGTTGTTCAGGA-GGTGATGCC--------------GGGG-AAAATCTCATG-CCTTTCAGCCCACCAAGGTGCAGTTTATTT-----ACACACAGATTGTCCAATT-CCTCATTATTA--TTGCTG--TCCTT-CCTCAT-CCTGAAG-C-ATGAC-------CAAAGAGAAAAGCTC-TGAG-CCAGAA-TTAACATCTTT--AC-TTCAAGTATT-C-----ATAAAG------AATTCAAATGTGAT-GGACAATTCT--GGATCCCACTGGA--TCCCAGTAGATTCTGGA---TCCCGCT-AGATCCCACTACACTCACAACTTCATTCTT--AAACACT--AAAGTTGGG-AAAAGCAAATTGTG--AGT--TCTCTTTTATTTT--GGTTCACTGTTGGAG-----GGG-------GCGGG---AACGGCATAAATAATACCT------------------ATTCATCACTATAGCTAGCCTGATAGCTTTGTAAATTAAATTGTTAGCTCTTCTGGGAAATTAACTCATGTGACGTTAAACTCCATAGT------------------------------------------TAAG--------CTTACGTA----------------- s panTro4.chr1 224996161 523 + 228333871 AAAGGTACT-CGGTAGCTGTTA-TTCACTTAGTCAACAAGTAGAAACAGTGGGGATAGCTCTCTCTTGTTCAGGA-GGTGATGCC-------------AGGGG-AAAATCTCATG-CCTTTCAGCCCACCAAGGTGCAGTTTATTT-----ACACACAGATTGTCCAATT-CCTCATTATTA--TTGCTG--TCCTT-CCTCAT-CCTGAAG-C-ATGAC-------GAAAGAGAAAAGCTC-TGAG-CCAGAA-TTAACATCTTT--AC-TTCAAGTATT-C-----ATAAAG------AATTCAAATGTGAT-GGACAATTCT--GGATCCCACTAGA--TCCCAGTAGATTCTGGA---TCCCGCT-AGATCCCACTACACTCACAACTTCATTCTT--AAACACT--AAAGTTGGG-AAAAGCAAATTGTG--AGT--TCTCTTTTATTTT--GGTTCACTGTTGGAG-----GGG-------GCGGG---AACGGCATAAATAATACCT------------------ATTCATCACTATAGCTAGCCTGATAGCTTTGTAAATTAAATTGTTAGCTCTTCTGGGAAATTAACTCATGTGACGTTAAACTCCGTAGT------------------------------------------TAAG--------CTTACGTA----------------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226363269 582 - 229942017 AAAGGTACT-CGGTAGCTGTTATTTCACTTAGTCAACAAGTAGAAACAGTGGGGATAGCTCTCTCTTGTTCAGGAGGGTGATGCCCAGA-ATATATCCAGGGG-AAAATCTCATGCCCTTTCAGCCCACCAAGGTGCGGTTT-TAT-----TTACACAAATTGTCCAGTTACCTCATTATTAATTGGCTGGTCCTTC-CCTCATCCCTGATGCC-ATGACCAAAAGAGAAAGAGAAAAGATCTTGAGCCCAGAATTTAACATCTTTTACT-TTCAAGTATTAC-----ATAAAA----GTATTTCTAATGTGATGGGATAATTTCTGGAATCCCACTAAGATCCCCAGTAGATTCTGGGATCCTCCGCTAAGATCCCACTACACTCACAACTCCATTTCTTAAAACACTTAAAGGTTGGGAAAAAGCGAATTGTGGCAGTTCTCTCTTTTATTTTTGGTTTCACTGTTGGGA-----GGG----GTTGTGGG---AACGGCATAAATAATACCT------------------ATTCATCACTATAGCTAGCCTGATAGCTTTGTAAATTAAATTGTTAGCTCTTCTGGGAAATTAACTCATGTGATGTTAAACTCCCTAGT------------------------------------------TAAG--------CTTACGTA----------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140247995 517 - 143122389 AAAGGTACT-CTCTAGCTATTA-TTCACTTAGGCAACAGGTAGAAACAGTGGGGTTAGCTCTCTCTTGTTCAGGA-GGTGATGCC-AGA-ATATATCCAGGGG-AAAATCTCATG-CCTTTCAGCCCACCAAGGTGCAGTTTATTTACACAACACACAAATTGTCCAATT-CTTCATTATTA--TTGCTG--TCCTT-CCTCAT-CCTGAAG-C-ATGACCAAAG--AGAAGAGAAAAGATC-TGAG-CCAGAA-TTAATATCTTT--AC-TTCAAGTATT-C-----ATAAAG------AATTCAAATGTGAT-GGATAATTCT--GGATCCCACT---------------------------------AGATCCCACTACACTCACAGCTTCATCCTT--AAACACT--AAAGTTGGG-ACAAGCGAATTGTG--AGT--TCTCTTTTATTTT--GGTTCACTGTTGGAG-----GGG-------ATGGG---AACGGCACAAATAAAACCT------------------GTTCATCACTATAGCTAGCCTGATAGCTTTGTAAATTAAATTGTTAGCTCTTCTGGGAAATTAACTCGTGTGAGGTTAAACTCCCTAGT------------------------------------------TAAG--------CTTACCTA----------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16959388 532 - 229590362 --------T-CTGTAGCTGTTA-TTCACTTAGTCAACAAGTAGAAACAGTGGAGATACCTCTCTCTTGTTCAGGA-GGTGATGCC-AGA-ATGGATCCAGGGGAAAAATCTCATG-CCTTCCAGCCCACCAAGGTGCAGTTTATTT-----ACACACAGATTGTCCAGTT-CCTCATTATTA--TTGCTG--CCCCT-CCTCAT-CCTGAAG-C-ATGACCAAAG--AGAAGAGAAAAGATC-TGAG-CCAGAG-TTAACATTGTT--AC-TTCAAGTATT-C-----ATAAAG------AATTTAAATGTGAT-GGATAATTCT--GGATCCCACTAGA--TCCCAGTGGAGTCTGGA---TCCTGCT-AGATCCCACTACACTCACAACTCCATTCTT--AAACACT--AAAGTTGGG-AAAAGCGAATTGTG--AGT--TCTCTTTTATTTT--GGTTCGCTGTTGGAG-----GGG-------GCCGG---AACGGCATAAATAATACCT------------------GTTCATCACTATAGCTAGCCTGATAGCTTTGTAAATTAAATTGTTAGCTCTTCTGGGAAATCAACTCATGTGACGTTGAACGCCCTAGT------------------------------------------TAAG--------CTTACGTA----------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223722489 532 - 227556264 --------T-CTGTAGCTGTTA-TTCACTTAGTCAACAAGTAGAAACAGTGGAGATACCTCTCTCTTGTTCAGGA-GGTGATGCC-AGA-ATGGATCCAGGGGAAAAATCTCATG-CCTTCCAGCCCACCAAGGTGCAGTTTATTT-----ACACACAGATTGTCCAGTT-CCTCATTATTA--TTGCTG--CCCCT-CCTCAT-CCTGAAG-C-ATGACCAAAG--AGAAGAGAAAAGATC-TGAG-CCAGAG-TTAACATTGTT--AC-TTCAAGTATT-C-----ATAAAG------AATTTAAATGTGAT-GGATAATTCT--GGATCCCACTAGA--TCCCAGTGGAGTCTGGA---TCCTGCT-AGATCCCACTACACTCACAACTCCATTCTT--AAACACT--AAAGTTGGG-AAAAGCGAATTGTG--AGT--TCTCTTTTATTTT--GGTTCGCTGTTGGAG-----GGG-------GCCGG---AACGGCATAAATAATACCT------------------GTTCATCACTATAGCTAGCCTGATAGCTTTGTAAATTAAATTGTTAGCTCTTCTGGGAAATCAACTCATGTGACGTTGAACGCCCTAGT------------------------------------------TAAG--------CTTACGTA----------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16772433 532 - 220367699 --------t-ctgtagCTGTTA-TTCACTTAGTCAACAAGTAGAAACAGTGGAGATACCTCTCTCTTGTTCAGGA-GGTGATGCC-AGA-ATGGATCCAGGGGAAAAATCTCATG-CCTTCCAGCCCACCAAGGTGCAGTTTATTT-----ACACACAGATTGTCCAGTT-CCTCATTATTA--TTGCTG--CCCCT-CCTCAT-CCTGAAG-C-ATgaccaaag--agaagagaaaagatc-tGAG-CCAGAG-TTAACATCGTT--AC-TTCAAGTATT-C-----ATAAAG------AATTTAAATGTGAT-GGATAATTCT--GGATCCCACTAGA--TCCCAGTGGATTCTGGA---TCCCGCT-AGATCCCACTACACTCACAACTCCATTCTT--AAACACT--AAAGTTGGG-AAAAGCGAATTGtg--agt--tctcttttatttt--ggttCGCTGTTGGAG-----GGG-------GCCGG---AACGGCATAAATAATACCT------------------GTTCATCACTATAGTTAGCCTGATAGCTTTGTAAATTAAATTGTTAGCTCTTCTGGGAAATCAACTCATGTGACATTGAACGCCCTAGT------------------------------------------TAAG--------CTTATGTa----------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82570279 532 + 85787240 --------T-CTGTAGCTGTTA-TTCACTTAGTCAACAAGTAGAAACAGAGGAGATACCTCTCTCTTGTTCAGGA-GGTGATGCC-AGA-ATGGATCCAGGGGAAAAATCTCATG-CCTTCCAGCCCACCAAGGTGCAGTTTATTT-----ACACACAGATTGTCCAGTT-CCTCATTATTA--TTGCTG--CCCCT-CCTCAT-CCTGAAG-C-ATGACCAGAG--AGAAGAGAAAAGATC-TGAG-CCACAA-TTAACATCGTT--AC-TTCAAGTATT-C-----ATAAAG------AATTTAAATGTGAT-GGATAATTCT--GGATCCCACTAGA--TCCCAGTGGATTCTGGA---TCCCGCT-AGATCCCACTACACTCACAACTCCATTCTT--AAACACT--AAAGTTGGG-AAAAGCGAATTGTG--AGT--TCTCTTTTATTTT--GGTTCGCTGTTGGAG-----GGG-------GCGGG---AACGGCATAAATAATACCT------------------GTTCATCACTATAGCTAGCCTGATAGCTTTGTAAATTAAATTGTTAGCTCTTCTGGGAAATTAACTCATGTGACGTTCAACGCCCTAGT------------------------------------------TAAG--------CTTATGTA----------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14254059 520 - 49578535 AAAGGCACT-CTGTAGCTTTTA-CTCACTTAGTCAACAAGCAGAAA------------------------CAGGA-GGTGATGCC-AGA-ATATATCTGGGAT-AAAATCTCATG-CCTTTCAGCCCACCAAGTTGCGGTTTATTTACACAACACACAAATTGTCCAGTT-CCTCGTTATTA--CTGCTG--CCCTT-CCTCAT-CCTGAAG-C-ATGACCAAGG--AGAAGAAAAAAGATT-TGAG-CCAGAA-TTAACATCTTT--AT-TTCAAGTATA-C-----ATGAAG------AATTCAAATGTGAT-GGATAATTCT---------------------------------------------AGATCCTACTACATTCACAACTGCATCCCT--AAACAGT--AAAGTTGGG-AGAAGCAAACTGTG--AGT--TCTCTTTTATTTT--GGTGCACTAATGGGG-----GAA---------------AACAGCATATATAATACCT------------------ATTCATCACTATAGCCAGCCTGATAGCTTTGTAAATTAAATTGTTAGCTCTTCTGGGAAATTAACTCATGTGACCTTACACGCTGTAGTTACAGGGACGCTTCTGGCTCAGTTGGTTTTGATTGAGTCTCCTAAG--------CTTATGTA----------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178826279 520 + 195471971 AAAGGTGCTAACGTAGCTATTG-CTCATTTATTTAACAAGGAGAAATGGCAAGGGCAGC---------TTCAGGA-GCTGATTTC-AGGTCCATATCAAGGAGAAAAATCTCCTG-CCTTCCAGCCCAAGAAGGTCCAGGTCACTTAAAC-ACATGCAAATTATCCTGTT--CTCATTACCA--TGTTTG--CCCTTCCCCCAT-CGTAAAG-CTTTTATCAGGG--AGAAGAGCAAAGATT-GGAG-CCTGTCTTTAAAAT--TC--AT-TTTTAGTATA-TATGAAATAAAA------CATTCGGATAGGAA-GGAAAATTCT--GGATCCCGGCAGT------------------------------CAGTC-----ACTGTCACTACTCCAT-CTT--CAGTACA--AATGACAGG-AAATGTGAACCATG--ACA--TCGCTCCTATTTTT-GGTGTACAGTTGAGGAAAAAGAA-------GTGGGCCTGGCTGCATAAATAATACGC------------------ATTCATCACTAT-GCTCATCTGATAGCTCTATAAATTAAATTGTTAGCTCTTCCGGGAAATAAACCTGTGTGACCTTCCACTCCCTAAT------------------------------------------TGCA--------ATTATGCC----------------- i mm10.chr1 I 7 I 621 s canFam3.chr7 36402087 552 + 80974532 --AGATCCTAATGTAGCTGTTA-T----TTATTCAACAAGTAGAAATGGCTGGTGTATCTGTCCCTTATTCAGGA-AGTGATGCC-AGG-TTACAT---GGAGGAGAATTTTATG-CCTTCCAGCCTGCCAAGGTCCAGGTTATTTAAATAGTATGCAAATTGTCAAATT-CCTCATTATCA--TTTCCA--TCATT-CCTCAT-CTTGAAG-c-tctgttggag--agaacgggaaagact-tgag-ccagcc-tt-------tg--acattcaagtata-t-----ataaaatgaagagtttcaaatgtgat-ggaagaTTCC--AGATTCTACTACT------------------------------CACTCAC----CAGTGACTACTCCATCCTT--AAATGCT--ACAGATGGG-GAGAGTGACTCGTG--AGC---------TATTTC--CCTGTGCTGGAAGGG-----GGGCGGGAGTAGGGG---AAATGCATAAATAATACTGCATAAATAGTACAAAATAATTTATCAGGACGGCTGGCCTGATGGCTTTGTAAATTAAGTTGTCAGCTCTTCTGGGGAGTAAACTCATGTGACCTTCTGCTCCCTAAT------------------------------------------TACAGATATTCCTTTCTGTGTTCTGCTGGTTTTGCTT i canFam3.chr7 C 0 C 0 a score=1001607.000000 s hg38.chr1_KI270759v1_alt 241185 347 + 425601 GAGTTGG---------------GGGTGGTGGTTGTTTTCCCTTTCTTCCTTTATTTCTTATTTTGAGCCTTCCTTCAACCGATACCTCCAGAGAAAGGCGACTTG--GGGAAAATG-TTCTGACTC-TTAATCTTCGCGGTTT--C-TT-------------------TTTTCCCACGGATGTAG-ATTTCGCCAGCCTCTGGACAGCACATGCGCAGTATGC-TGCTAGCGCCG-CCCCAGGCGCCCGGAGCTCAGGAAGCGCAGGTGGCGCTG-CCAGAAGGGCCATGCTA-TTTCTGGGGCAAA-CCTGAAAGACCTCAGACACAGGGGCTTTCTT-CTA-------TGCCATGCCACT-GTTGAAC---TTAGCACTCCCCGTTCTT-GCAAA-GAGTGGGAAC s panTro4.chr1 224996684 347 + 228333871 GAGTTGA---------------GGGTGGTGGCTGTTTTCCCTTTCTTCCTTTATTTCTTATTTTGAGCCTTCCTTCAACCGATACCTCCAGAGAAAGGCGACTTG--GGGAAAATG-TTCTGACTC-TTAATCTTCGCGGTTT--C-TT-------------------TTTTCCCACGGATGTAG-ATTTCGCCAGCCTCTGGACCGCACATGCGCAGTATGC-TGCTAGCGCCA-CCCCAGGCGCCCGGAGCTCAGGAAGCGCAGGTGGCGCTG-CCAGAAGGGCCATGCTA-TTTCTGGGGCAAA-CCTGAAAGACCTCAGTCACAGGGGCTTTCTT-CTA-------TGCCATGCCACT-GTTGAAC---TTAGCACTCCCCATTCTT-GCAAA-GAGTGGGAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226363851 361 - 229942017 GAGTTGG---------------TGGTGGTGGTTGTTTTCCCTTTCTTCCTTTATTTCTTATTTTGAGCCTTCCTTCAACTAATATCTCAAGAGAAAGGCTGCTTG--GGGAAAATGTTTCTGACTCATTCATCTTCGCAGTTTTCT-TT-------------------TTTTCCCACGGATGTAG-ATTTCGCCAGCCTCTGGGCCGCACATGCGCAGTATGC-TGCTAGCGCCACCCCCAGGCGCCCGGAGCTCCGGAAGCGCAGGTGGCGCTGCCCCGAAGGGCCATGCTATTTTCTGGGGCAAACCCTGAAAGACCTCAGTCACAGGGGCTTTCTTNCTA-------TGCCATGCCACTCGTTGAACNCGTTAGCAGTCCCCATTCTTGGCAAA-GAGTGGGAAC i ponAbe2.chr1 C 0 I 5 s nomLeu3.chr5 140248512 347 - 143122389 GAGTTAG---------------TGGTGGTGGTGGTTTTCCCTTTCTTCCTTTATTTCTTATTTTGAGCCTTCCTTCAACCGACACCTCAAGAGAAAGGCGACTTG--GGGAAAATG-TTCTGACTC-TTAATCTTCGCGGTTT--C-TT-------------------TTTTCCCACGGATGTAG-ATTTCGCCAGCCTCTGGACCGCACATGCGCAGTATGC-TGCTAGCGCCA-CCCCAGGCGCCCGGAGCTCAGGAAGCGCAGGCGGCGCTG-CCATAAGGGCCATGCCA-TTTCTGGGGCAAA-CCTGAAAGACCTCAGTCACAGGGGCTTTCTT-CTA-------TGCCATGCCACT-GTTGAAC---TTAGCAGTCCCCATTCTT-GCAAA-GAGTGGGAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16959920 349 - 229590362 GAGTTGG---------------TGGTGGTGGTGGTTTTCCCTGTCTTACTTTATTTCTTATTTTGAGCCTTCCTTCAACCCGTATCTCAAGAGAAAGGCGTCTTG--GGAAAAATG-TTCTGACTCATTCATCTTCGCGGGTT--C-TT-------------------TTTTCCCACGGATGTAG-ATTTCGCCAGCCTCTGGGCCGCACATGCGCAGTATGCACGCTAGCGCCA-CCCCAGGCGCCCGGAGCTCAGGAAGCGCAGGTGGCGCTGCCCCGAAGGATCGTGCTA-TTTCTGGGGCAAA-CCTG-AAGACCTCAGGCACAGGCGCTTTCTT-CTA-------TGCCACACCACT-GTTGAAC---TTAGCAGTCCCCATTCTT-GCAAA-GAGAGGGAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223723021 348 - 227556264 GAGTTGG---------------TGGTGGTGGTGGTTTTCCCTGTCTTACTTTATTTCTTATTTTGAGCCTTCCTTCAACCCGTATCTCAAGAGAAAGGCGTCTTG--GGAAAAATG-TTCTGACTCATTCATCTTCGTGGGTT--C-TT-------------------TTTTCCCACGGATGTAG-ATTTCGCCAGCCTCTGGGCCGCACATGCGCAGTATGCACGCTAGCGCCA-CCCCAGGCGCCCGGAGCTCAGGAAGCGCAGGTGGCGCTG-CCCGAAGGATCGTGCTA-TTTCTGGGGCAAA-CCTG-AAGACCTCAGGCACAGGCGCTTTCTT-CTA-------TGCCACGCCACT-GTTGAAC---TTAGCAGTCCCCATTCTT-GCAAA-GAGAGGGAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16772965 348 - 220367699 gagttgg---------------tggtggtggtggttttccctgtcttactttatttcttattttgagcCTTCCTTCAACCCGTATCTCAAGAGAAAGGCGTCTTG--GGAAAAATG-TTCCGACTCATTCATCTTCGCGGGTT--C-TT-------------------TTTTCCCACGGATGTAG-ATTTCGCCAGCCTCTGGGCCGCACATGCGCAGTATGCACGCTAGCGCCA-CCCCAGGCGCCCGGAGCTCAGGAAGCGCAGGTGGCGCTG-CCCGAAGGATCGTGCTA-TTTCTGGGGCAAA-CCTG-AAGACCTCAGGCACAGGCGCTTTCTT-CTA-------TGCCACGCCACT-CTTGAAC---TTAGCAGTCCCCATTCTT-GCAAA-GAGAGGGAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82570811 336 + 85787240 GAGTTGG---------------TGGTGGTGGTGGTTTTCCCTGTCTTCCTTTATTTCTTATTTTGAGCCTCCCTTCAACCCATGTCT------------ATCTTG--GGAAAAATG-TTCCGACTCATTCATCTTCGCGGGTT--C-TT-------------------TTTTCCCACGGATGTAG-AGTTCGCCAGCCTCTGGGCCGCACATGCGCAGTATGCACGCTAGCGCCA-CCCCAGGCGCCCCGAGCTGAGGAAGCGCAGGTGGCGCTG-CCCAAAGGATCGTGCTA-TTTCTGGAGCAAA-CCTG-AAGACCTCACGCACAGGGACTTTCTT-CTA-------TGCCACGCCACT-GTTGAAC---TTAGTAGTCCCCATTCTT-GCAAA-GAGAGGGAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14254579 343 - 49578535 GAGTTGG---------------TGGTGGT----GTTTTCCCTTTCTTCCTTTATTTCTTATTTGGACCCTTCCTTCAAATTATATCTCAAGAGAAAGGCGACTTG--GGAAAAATG-TTCTGACTCATTAATCTTCGCCGTTT--CTTT-------------------TTTTCCCACGGATGTGG-ATTTCGCCAGCCTCTGGGCCGCGCATGCGCATTGTGC-TGCTAGTGCCA-CCCCAGGCACCCAGAGCTCAGGAAGCGCAGCGGGCGCTG-CTGGCGGGGCCATGCTA-TTTTGGGGACAAA-TCTGAAAGGCTTCAGTCATAGGCGCTTTCTG-CTA-------TGCCATGCCACT-GTTGAAC---TTAGCAGCCCTTATTCTT-GC--A-GAGTGGGAAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36402639 356 + 80974532 GAGTTGGCTAAGCTCCTGTCCTTGGAGTT--TGGTTTT--CTGTCCTTCCTTGTTTCTTATTCTGACCCCTCCTCCAGTCTGCATTTGAAGAGCAAAGAGGTTTGCTCTGAAAAAG-TTTGGACTCTTTCCCCTGAGAGGGTC--C-TCCCCTGACCCCATGCAGAGGTTTCCACGCGGTCCTAGTGCCTTTCCCACCGTTGG------CAGGTGAAGCATGT--------GCCA-TGCCAGACACCCAGGGCTT---------------------CACCAAGGGCTGAGATG-TTTCTGGAGCCAA-TCTGAATGGCCTCAGTCATGGGTGCTTTTGT-CTACACCTCCTGCCATGTCACT-CTTGAAT---TTAGCAGCTTTCACACTT-GCAAACAAGAGGGTAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178826799 621 + 195471971 I a score=224979.000000 s hg38.chr1_KI270759v1_alt 241532 93 + 425601 TGTTAGGAGAATATTCTCCGTTAGAGGTTACTGGGCAGGAA-AGTCATCCCAAGGACGTGTATAAAGAAAGTGTGA-gccaggca----tggtggctca s panTro4.chr1 224997031 93 + 228333871 TATTAGGAGAATATTCTCCGTTAGAGGTTACTGGACAGGAA-AGTCATCCCAAGGACGTGTATAAAGAAAGTGTGA-gccaggca----tggtggctca i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140248859 93 - 143122389 AATTGGGAGAATATTCTCCATTAGAGGTTACTGGACAGGAA-AGTCATCACAAGGACGTGTGTAAAGAAAATGTGA-gccaggca----cgctacctca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16960269 93 - 229590362 TATTAGGAGATTATTCTCCATTAGAGGTTACTGGACAGGAA-AGTCATCACGAGGACATGTATAAAGAAAGCGTGA-gccaggcg----cggtggctca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223723369 93 - 227556264 TATTAGGAGATTATTCTCCATTAGAGGTTACTGGACAGGAA-AGTCATCACGAGGACATGTATAAAGAAAGCGTGA-gccaggcg----cggtggctca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16773313 93 - 220367699 TATTAGGAGAATATTCTCCATCGGAGGTTACTGGACAGGAA-AGTCATCACGAGGACATGTATAAAGAAAGcgtga-gccaggcg----cggtggctca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82571147 93 + 85787240 TATTAGGAGAATATTCTCCATTGGAGGTTACTGGACAGGAA-ACTTGTCACGAGGACGTGTATAAAGAAAGCGTGA-gccaggcg----cgatggctca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14254922 93 - 49578535 TATTTGGAGAATATTCTTCGTTAGAGGTTACTGGAGGGGAA-AGTCGAGGCAAGGATCTGTATAAAGAAAGCAAGA-Actgggcg----cggtggctca i calJac3.chr19 C 0 C 0 s canFam3.chr7 36402995 97 + 80974532 TGTTA-GAAAATATTTTCCATTAAGGGCTACTGGACAGAAAGAGTCCTTGTAA-AACACGTGTAAAGAAAGTGGGGTGCCAggcagccccggtagctca i canFam3.chr7 C 0 I 178 e mm10.chr1 178826799 621 + 195471971 I e ponAbe2.chr1 226364212 5 - 229942017 I a score=99301.000000 s hg38.chr1_KI270759v1_alt 241625 44 + 425601 cgtctgtaatcccagcactttgggagattgaggcgggtggatca s panTro4.chr1 224997124 44 + 228333871 cgtctgtaatcccagcactttgggagactgaggcgggtggatca i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140248952 44 - 143122389 tgcctgtaatcccagcactatgggaggctgacgcgggtggatca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16960362 44 - 229590362 cgcctataatcccagcactttgagaggctgaggcgggtggatca i rheMac3.chr1 C 0 I 718 s macFas5.chr1 223723462 44 - 227556264 cgcctataatcccagcactttgagaggctgaggcgggtggatca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16773406 44 - 220367699 cgcctataatcccagcactttgagaggctgaggcgggtggatca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82571240 44 + 85787240 cgcctgtattcccagcactttgagaggctgaggcgggtggatca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14255015 44 - 49578535 cacctgtcatcgcagcactttgggaggccgacgcgggtggatca i calJac3.chr19 C 0 C 0 e mm10.chr1 178826799 621 + 195471971 I e canFam3.chr7 36403092 178 + 80974532 I e ponAbe2.chr1 226364212 5 - 229942017 I a score=146387.000000 s hg38.chr1_KI270759v1_alt 241669 85 + 425601 cttgaggtcagaagttcgagaccagcctggccaagatggtgaaaaccctgcctctactaaaaatac-aaaaattagccaggcatgg s panTro4.chr1 224997168 85 + 228333871 cttgaggtcagaagttcgagaccagcctggccaacatggtgaaaaccctgtctctactaaaaatac-aaaaattagccaggcatgg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140248996 84 - 143122389 cttgaggtcagaagttcgagagcagcctggccaacatggtg-aaaccctgtctctactaaaaatac-aaaaattagccaggcatgg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223723506 85 - 227556264 cttgaggtcagaagttcgagaccagcctggccaacatggtg-aaaccctgtctctactgaaaatacaaaaaattagccgggcgtgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16773450 85 - 220367699 cttgaggtcagaagttcgagaccagcctggccaacatggtg-aaaccctgtctctactgaaaatacaaaaaattagctgggcgtgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82571284 85 + 85787240 cttgaggtcagaagttcgagaccagcctggccaacatggtg-aaaccctgtctctactaaaaatacaaaaaattagccaggcgtgg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14255059 85 - 49578535 cttgaggtcagaagtttgagaccagcctggccaacatggca-aaactctgtctctactaaaaatacaaaaaattagctgggtgtgg i calJac3.chr19 C 0 C 0 e mm10.chr1 178826799 621 + 195471971 I e canFam3.chr7 36403092 178 + 80974532 I e rheMac3.chr1 16960406 718 - 229590362 I e ponAbe2.chr1 226364212 5 - 229942017 I a score=86366.000000 s hg38.chr1_KI270759v1_alt 241754 50 + 425601 tggcaggcacctgtaatcccagctact------caggaggctgaggcaggaggatc s panTro4.chr1 224997253 50 + 228333871 tggcagccacctgtaatcccagctact------cgggaggctgaggcaggaggatc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140249080 50 - 143122389 tggcaggcgcctgtaatcccggctact------cgggaggctgaggcaggaggatc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223723591 50 - 227556264 tgacaggcgcctataatcctagctact------tgggaggctgaggcaggaggatc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16773535 50 - 220367699 tgacaggcgcctataatcctagctact------tgggaggctgaggcaggaggatc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82571369 50 + 85787240 tgacaggcgcctgtaatcctagctact------tgggaggctgaggcaggaggatc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14255144 50 - 49578535 tagtgggcgcctgtaatcccagctact------tgggaggctgaggcaggagaatc i calJac3.chr19 C 0 I 133 s mm10.chr1 178827420 47 + 195471971 TGGTAGGAGCCTG-GCTCCCAGGCACTGTCTTGCAGGGAAC----ACAGTAG---- i mm10.chr1 I 621 C 0 e canFam3.chr7 36403092 178 + 80974532 I e rheMac3.chr1 16960406 718 - 229590362 I e ponAbe2.chr1 226364212 5 - 229942017 I a score=113151.000000 s hg38.chr1_KI270759v1_alt 241804 93 + 425601 acttgaacccgggaggc------gga-gttgcagtaagccaagatcgccaccactgcactc--caggctgggcgacagagcgagactcc-----------atctc---------------aaaaaaaa s panTro4.chr1 224997303 92 + 228333871 acttgaacatgggaggc------gga-gttgcagtaagccaagatcgccaccactgcactc--caggctgggcgacagagcgagactcc-----------atct----------------aaaaaaaa i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140249130 87 - 143122389 acttgaacccgggaggc------gga-gttgccgtgagccgagatcgccgccactgcactc--caggctgggcgacagagcaagactct-----------atat---------------------caa i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223723641 84 - 227556264 acttgaacccaggaggc------aga-gttgcagtgagccgagatcgccaccactgcactc--cagcctgggcgacagagtgggactcc-----------atct------------------------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16773585 84 - 220367699 acttgaacccaggaggc------aga-gttgcagtgagccgagatcgccaccactgcactc--cagcctgggcgacagagtgagactcc-----------atct------------------------ i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82571419 84 + 85787240 acttgaacccagaaggc------aga-gttgcagtgagccgagatcgccaccactgcactc--cagcctgggcgacagagtgagactcc-----------atct------------------------ i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14255327 91 - 49578535 gcttgaacctaggaggc------agaggttgcagcgagctgagatagcc-ccactacactc--tagcctgggtgacagagcaagattcc-----------aact-----------------caaaaaa i calJac3.chr19 I 133 C 0 s mm10.chr1 178827467 123 + 195471971 ACCTAAGTCATAGAAACTTGTCTAGA-GT---AGCCAGCT-ACTCTGACATCCTAGCATTCATCATTCTTGCAGATGGAAGGAGACCTCTTAGGAAAATGAGCTCCGTTAAAGGCCACTAGCGAGAAG i mm10.chr1 C 0 C 0 e canFam3.chr7 36403092 178 + 80974532 I e rheMac3.chr1 16960406 718 - 229590362 I e ponAbe2.chr1 226364212 5 - 229942017 I a score=529967.000000 s hg38.chr1_KI270759v1_alt 241897 273 + 425601 aaaaaaaaaaa--------------aaGTGTGAAGCCATTTT-CA---TTCATTATTAATATGATCACCTTTAATTCTGCTGATGAGGGTGTGTGGATATCATTTTCTGTTGTCTTCATTATCAAATGGAGAACTAGAAGGGGTAAGCAGCACATTTTGGTTTAATTAGATCAGATTTATGATAGGAT-GGCATATCGCTACATATAAAATACTCATTTTCTGGCGTTCCTGGCCAGAGATGTCTACACAG---AGCAAAATGGATGAAAGGACCCACAG-----TGAGCAGGGAGGACT s panTro4.chr1 224997395 273 + 228333871 aaaaaaaaaaa--------------aaGTGTGAAGCCATTTT-CA---TTCATTATTAATATGATTACCTTTAATTCTGCTGATGAGGGTGTGTGGATATCATTTTCTGTTGTCTTCATTATCAAATGGAGAACTAGAAGGGGTAAGCAGCACATTTTGGTTTAATTAGATCAGATTTATGATAGGAT-GGCATATCGCTACATATAAAATACTCGTTTTCTGGCGTTCCTGGCCAGAGATGTCTACACAG---AGCAAAATGGATGAAAGGACCCAGAG-----TGAGCAGGGAGGACT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140249217 273 - 143122389 aaaaaaaaaaa--------------aaGTGTGAATCCATTTT-CA---TTCATTATTAATATGATTACCTTTAATTCTGCTGATGAGGGTGTGTGGATATCATTTTCTGTTGTCTTCATTATCAAATGGAGAACTAGAAGGGGTAAGCAGCACATTTCGGTTGAATTAGATCATATTTCTAATAGGAT-GGCATATCGCTACATATCAAATACTCATTTGCTGGCGTTCCTGGCCAGAGATGTCTACACAG---AGCAAAGTGGATGAAAGGACCCTCAG-----TGAGCAGGGAGGACT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223723725 266 - 227556264 -------caaa--------------aaGTGTGAAGCCATTTT-CATTCTTCATTATTAATATGATTGCCTTTAATTCTGCTAAGGAGGATGTGTGGATATCATTTTCTGTTGTCTTCATAATCAAATGGAGA---AGAAGGGGTAAGCAGCACATTTCAGTTTAATTAGATCAGATTTCTGATAGGAT-GGCATGTCGCTACATACAAAATACTCATTTTCTGGCTTTCCTGGCCAGAGATGCCTACACAG---AGCAAAATGGATGAAAGGGCCTGCAG-----TGAGCAGGAAGGACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16773669 266 - 220367699 -------caaa--------------aagtgtGAAGccatttt-cattcttcattaTTAATATGATTGCCTTTAATTCTGCTGAGGAGGGTGTGTGGATATCATTTTCTGTTGTCTTCATGATCAAATGGAGA---AGAAGGGGTAAGCAGCAcatttcagtttaattagatcagaTTTCTGATAGGAT-GGCATGTCGCTACATACAAAATACTCATTTTCTGGCTCTCCTGGCCAGAGATGTCTACACAG---AGCAAAATGGATGAAAGCGCCTGCAG-----TGAGCAGGAAGGACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82571503 266 + 85787240 -------caaa--------------aaGTGGGAAGCCATTTT-CGTTCTTCATTATTAATATGATTGCCTTTAATTCTGCTGAGGAGGGTGTGTGGATATCATTTTCTGTTGTCTTCATGATCAAATGGAGA---AGAAGGGGTAAGCAGCACATTTCAGTTTAATTAGATCAGATTTCTGATAGGAT-GGCATATCGCTACATATAAAATACTCATTTTATGGCTTTCCTGGCCAGAGATGCCTACACAG---AGCAAAATGGATGAAAGGACCTGCAG-----TGAGCAGGGAGGACT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14255418 255 - 49578535 aaaaaaaaaaa--------------aaGTGTGAAGCCATTTT-CATTCTTCATTATTAATATGATTACATTTACTTCTGCTGATGAGGG---------------------TGTCTTCATTATCGAATGGAGAACTAGAAGGGGTAGGCAGCACATTTCGGTTGAATTAGATCAGATTTCGGATAGGAT-GGCTTATCACTGCATATAAGATTCTCATTTTCTGGCTTTCCTGGCCAGAGGTGTCTGCACAG---AGCAAAGGGGATGAAAGGACCCGGGG-----TGAACAGGGAGGACT i calJac3.chr19 C 0 C 0 s mm10.chr1 178827590 266 + 195471971 AGGCATAAAAAGTCTCTTGTGAATTAAGTGTGGGGTGATTTG-TATTCCTCCTGAATAATGTGCTT-CCTTTAATGTGGT-----GGGTTGTGTGGGTGTCATTTTCTGTTGTCTCCTTACTCAGGTGGGCT---TGAAGGGGTAGGTGGTACAGTTCCAT------------GAATTCTAGTATGACAGACATA---CTACATATGAAGACCTTAATTTCCAATCTC---------AGATGTTTGCAGAATGTTGCAGACTGGGTGAGAAAACCTCGAGGCTGTTGAGGAGGAATAGCC i mm10.chr1 C 0 I 1 s canFam3.chr7 36403270 272 + 80974532 aaaaaaaaaGA--------------AAGTGGGGTGCCATTTTGCAT--TTCATAAATAGTATGACTGCCTTTAAAACTGCTGATCAACTTGTATGGAGGTGATTTTCTGTTGTCTTTGTTATCAGAAGGAAATCTAGAA-GGGTAAGCAGTACATTTCAGCTTCATTAGATCTGATTTCAGACAGGAG-GGTGCATTACCATATATAAAATACTCCATTTGGGGCTCTCTCTGCCCAGGATATCTATAAAG---AGCA-AGCCAATGAATGATTCTCCGG------ACGTAGGGAGGAAT i canFam3.chr7 I 178 C 0 e rheMac3.chr1 16960406 718 - 229590362 I e ponAbe2.chr1 226364212 5 - 229942017 I a score=254346.000000 s hg38.chr1_KI270759v1_alt 242170 105 + 425601 GGTTTGGTCCTGTAGCCCAGAGTCTCCTATCTTATAT-ACCAGGTCTGTTCTTG-AGCTTTCAGAGTGCAAGTAGAGAAACAGAATTTAGCATCCACTTTCTCCGTG s panTro4.chr1 224997668 105 + 228333871 GGTTTGGTCCTGTAGCCCAGAGTCTCCTATCTTATAT-ACCAGGTCTGTTCTTG-AGCTTTCAGAGTGCAAGTAGAGAAACAGAATTTAGCATCCACTTTCTCCGTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226364217 106 - 229942017 GGTTTGGTCCTGTAGCCCAGAGTTTCCTATCTTCTATCCCCAGGTCTGTTCTTT-AGCTTTCAGGGTGCAAGTAGAGAAACAGAATTTAGCATTCACTTTCTCCGTG i ponAbe2.chr1 I 5 C 0 s nomLeu3.chr5 140249490 105 - 143122389 GGTTTGGTCCGGTAGCCCAGAGTTTCCTATCTTACAT-CCCAGGTCTGTTCTTG-AGCTTTCAGGGTGCAAGTAGAGAAACAGAACTTTGCATCCGCTTTCTCTGTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223723991 104 - 227556264 GGTTTGGTCCTGTAGCCCAGAGTGTCCTATCTTATAT-CCCAGGTCTGTTCTTG-AGCTTTCAGGCTACAAGTAAAGAAAC-GAATTTAGCATCCACTTTCTCCGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16773935 104 - 220367699 GGTTTGGTCCTGTAGCCCAGAGTGTCCTACCTTATAT-CCCAGGTCTGTTCTTG-AGCTTTCAGGCTGCAAGTAGACAAAC-GAATTTAGCATCCACTTTCTCCGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82571769 104 + 85787240 GGTTTGGTCCTGTAGCCCAGAGTGTCCTATCTTATAT-CCCAGGTCTGTTCTTG-AGCTTTCAGGCTGCAAGTAGAGAAAC-GAATTTAGCATCCACTTTCTCCGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14255673 105 - 49578535 GGTTTGGTCCTGTAGCCCAGAGTTTCCAATCTTAAAT-CATAGGTCTGTTCTTG-AGCTTTGAGGGTGCAGGTAGAGGAACAGAATTTTGCATCCACTTTTTCCATG i calJac3.chr19 C 0 I 316 s mm10.chr1 178827857 67 + 195471971 --------------------GGTGTGCTGTC-------TCCTGGCCT--------AGCTCTCCTGATGCATGAAGGGAAAG-----TGTACAGCCAGTGTCTTCATG i mm10.chr1 I 1 C 0 s canFam3.chr7 36403542 104 + 80974532 AGTTGGGTCCTGCAGCCCAGAGTTAACC-TCTTATGT--CTTGGTCCATTATTGTAGTGTTCAGAGCACAGACAGGGGAGGAGATTTTTACATCCATTTTCTTCATA i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16960406 718 - 229590362 I a score=781971.000000 s hg38.chr1_KI270759v1_alt 242275 313 + 425601 GAGATCCTGCATTTCCTACTTCT-CTGAACTTC-CCCTG-CC-TGCTTCATATGAGTAGACAGGCTCTTCTGAACACATTTTTGTTTAAGTTTCAGGGACCTGACGCC-TTCCAGGCACTGATATGTGTACATATACTCCACAAGACGTATCTATGGGCAAGCTAGAATTCAGCCCCTTATGTTTCTAGTGG-AA----------tgttcatttcagtttccgtcactaggttgttagcttcttgggaggag-gaaacatgttctt----------ttcatctttgtaccctttcagtgccagctcagtgcTAGAAAGGA--TACACAATGTG-GTTGAACTT s panTro4.chr1 224997773 313 + 228333871 GAGATCCTGCATTTCCTACTCCT-CTGAACTTC-CCCTG-CC-TGCTTCATATGAGTAGACAGGCTCTTCTGAACACATTTTTGTTTAAGTTTCAGGGACCTGACGCC-TTCCAGGCACTGATATGTGTACATATACTCCACAAGACGTATCTATGGGCAAGCTAGAATTCAGCCCCTTATGTTTCTAGTGG-AA----------tgttcatttcagtttccatcactaggttgttagcttcttgggaggag-gaaacatgttctt----------ttcatctttgtaccctttcagtgccagctcagtgcTAGAAAGGA--TACACAATGTG-GTTGAACTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226364323 318 - 229942017 GAGATCCTGCATTTCCTACTTCTCCTGAACTTCACCCTGCCC-CGCTTCATATGGGTAGACAGGTTCTTCTGAACATCTTCTTGTTTAAGTTTCAGGGACATGACGCCTTTCCAGGCACTGATATGTGTACATATACTCCACAAGACGTATCTGTGGGAAAGCTAGAATTCAGCCCCTTATGTTTCTAGTGGAAA----------tgttcgtttcagtttccctcactaggttgttagcttcttgggaggag-gaaacatgttctt----------ttcatctttgtaccctttcagtgccagctcagtgccAGAAAGGA--TACTCAATGTG-GTTGAACTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140249595 313 - 143122389 GAGATCCTGCATTTCCTACTTCT-CTGAACTTC-CCCTG-CC-TACTTCATATGAGTAGACAGGGTCTTCTGAACACATTCTTGTTTAAGTTTCAGGGACACGACGCC-TTCCAGGCACTGATATGTGTACATATACTCCACAAGACGTATCTGTGGGCAAGCTAGAATTCAGCCCCTTATGTTTCTAGTGG-AA----------tgttcgtttcagtttccctcactaggttcttagcttcttgggaggag-gaaatgtgttctt----------ttcatctttgtaccctttcagtgccagctcagtgccAGAAAGGA--TACTCAGTGTG-GTTGAACTT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223724095 312 - 227556264 GAGATCCTGCATTTCCTGCTTCT-CTGAACTTC-CCCTG-CC-TGCTCCATATGAGTAGACAGGCTCTTCTGAACACCTTCTTGTTGAAGTCTCAGGGACATGACGCC-TTCCAGGCACTGATATGTGTACATATACTCCACAAGACGTGTCTGTGGGCAAGCTAGAGTTCAG-CCCTTACGTTTCTAGTGG-AA----------tgttcgtttcagtttccctcactaggttgttagcttcttgggaggag-gaaacatcgtctt----------ttcatctttgaaccctttcagtgcccgCTTAGTGCCAGAAAGGA--TACTCAATGTG-GTTGAACTT i macFas5.chr1 C 0 I 3 s papAnu2.chr1 16774039 312 - 220367699 GAGATCCTGCATTTCCTGCTTCT-CTGAACTTC-CCCTG-CC-TGCTCCATATGAGTAGACAGGCTCTTCTGAACACCTTCTTGTTGAAGTCTTAGGGACATGACGCC-TTCCAGGCACTGATATGTGTACATATACTCCACAAGACGTGTCTGTGGGCAAGCTAGAGTTCAG-CCCTTACGTTTCTAGTGG-AA----------TGTTCGTTTCAGTTTCCCTCACTAGGTTGTTAGCTTCTTGGGAGGAG-GAAACATCGTCTT----------TTCATCTTTGTACCCTTTCAGTGCCTGCTTAGTGCCAGAAAGGA--TACTCAATGTg-gttgaactt i papAnu2.chr1 C 0 I 5 s chlSab2.chr25 82571873 309 + 85787240 GAGATCCTGCATTTCCTGCTTCT-CTGAACTTC-CCCTG-CC-TGCTCCATATGAGTAGACGGGGTCTTCTGAACAC---CTTGTTGAAGTCTCAGGGACATGACGCC-TTCCAGGCACTGATATGTGTACATATACTCCACAAGACGTGTCTGTGGGCAAGCTAGAGTTCAG-CCCTTACGTTTCTAGTGG-AA----------tgttcgtttcagtttccctcactaggttgttagcttcttgggaggag-gaaacaccatctt----------ttcatctttgtaccctttcagtgcccgCTCAGTGCCAGAAAGGA--TACTCAATGTG-GTTGAACTT i chlSab2.chr25 C 0 I 20 s calJac3.chr19 14256094 317 - 49578535 GAGATCCTGCATTTCTTACTTCT-CTGAACTTC-CCCTG-CC-TGCTTCCTATGAGTAGACAGGGTCTCCTGAAAACCTTCTTGTTTAAGTTTCAGGGACATGATGCC-TTCCAGACACTGATACCTGTAAATACACAGCACAAGATATAGCAGTGGGCAAGCAAGAAATCAG-CCCTTATGTTTCTAGTGA-AA----------CGTTC-TTtcagtttccctcactagg---ttaacttcttgggaggaa-gaaacatgttcttttcctctttgttcctcTTTGTACCCCTTCAGTGCCAGCTCAATGCCAG-AAGGA--TACTCAACATA-GTTGAACTT i calJac3.chr19 I 316 C 0 s mm10.chr1 178827924 247 + 195471971 GAGACGGAGCATTTTCAGATTCA-CTTAATTTT-TCATA-CAGCTCTTCAGGTGAGGA-ACTGGGTGGTCTGAA-------------AAGTCTCAAGGATAGAAAGAT-CTCCAGGCAT------------AAGGCCTTTCCAGGAAATGCTCATGGGCAAGCCTGAAATCAG-ATCCTGAGTTTCCAGGGA-AGGTTTTTTTTTTTTTTTTTTTAGCTTCCCCTATTAGGTTATAAGCTTCTTGGGAGGAA-AAAAAA----------------------------------------------------AAGAAAGAAACTGCT---------TTGAAC-- i mm10.chr1 C 0 C 0 s canFam3.chr7 36403646 302 + 80974532 GAGCTTCT-CATTTTCCAGTTCT-CTGAACTTC----TG-CC-TGTCTTAGGTGGATCA--GGGGACTTCTGAAACCCT--CTGTTCAAGCTCCAGGAAAGTGAAGTC-CTCCAGACCCTGATCTCCACG-GCTTGCTGCAGAAGAGATATCTGTGGGCAAGCTAGCTTTCAGTTCCTTACATTCCAAGTGA-AA----------TAGCcttctcggtttccctcactagattgtaagcttctggggagaagagaatcatgttcct----------tccatctttgtatgccttcagtgccagttt----ccatgaggga--cactcaagacacattGAACAT i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16960406 718 - 229590362 I a score=1459901.000000 s hg38.chr1_KI270759v1_alt 242588 488 + 425601 AAAAAAAAAAATTCTATACAGTCCGTGT-------GAAGTCTTGATGGGGCGCTGAGCACTGTGTAGGGTCCGTCCTGAAAGAGGCA-GCTGCAAAAATGAGGCAGAAACAGTGAAAACATGGACGTGACCAGAACCCAGTGGTCCTTGGCTCCACCTGCTCTTCCCAGGGTGCGAGTTGTCCCAGGG-----------TTTTACATCAGGAAGAAGGTGACGCTTCATGCC-ACACGCTGGCAAAGAGGAAACAGTGTCCACATTCCTCACTGAGGAATTTTctcgaagaccttcttgt----cctgtcctctcattttgcatgtaa-ggaaactgagggccagcaagaggcactaacttg----tcATCCCACTT-TGTGGGAGAAGACAAAAGTTTAAACTTCTGAATGTAAAA--GATGATTTGTTGTGG-AAAACTGTTAATCAG-AATTTGAA-------TAAGAGATTCGT-AATCTT---TTCCTC-CCATTTTGCAAC----------------ttttttttttttttaaaaacaggg-ttt s panTro4.chr1 224998086 489 + 228333871 AAAAAAAAAAATTCTATACAGTCCGTGT-------GAAGTCTTGATGGGGCGCTAAGCACTGTGTAGGGTCCGTCCTGAAAGAGGCA-GCTGCAAAAATGAGGCAGAAACAGTGAAAACATGGACGTGACCAGAACCCAGTGGTCCTTGGCTCCACCTGCTCTTCCCAGGGTGCGAGTTGTCCCGGGG-----------TTTTACATCAGGAAGAAGGTGACGCTTCATGCC-ACACGCTGGCAAAGAGGAAACAGTGTCCACATTCCTCACTGAGGAATTTTctcgaagaccttcttgt----cctgtcctctcattttgcatgtaa-ggaagctgaggcccagcaagaggcactaacttg----tcAACCCACTTATGTGGGAGAAGACAAAAGTTTAAACTTTTGAATGTAAAA--GATGATTTGTTGTGG-AAAACTGTTAATCAG-AATTTGAA-------TAAGAGATTCGT-AATCTT---TTCCTC-CCATTTTGCAAC----------------ttttttttttttttttaaacaggg-ttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226364641 497 - 229942017 --AAAAAAAAATTCTATACAGTTCTTGT-------GAAGTCTTGATGGGGCGCTGAGCACTGTGTAGGGTCCGTCCTGAAAGAGGCA-GCTGCGAAAATGAGGCAGAAACAGTGAAAACACAGACCTGACCAGAACCCAGTGGTCCTTGGCTCCACCTGCTCTTCCCAGGGCGCGAGTTGTCCCGGGG-----------TTTTACATCAGGAAGAAGGTGATGCTTCATGCC-ACACACTGGCAAAGAGGAAACAGTGTCCACATCCCTCACTGaggaactttctcgaagactatcttgt----cctgtcctctcattttgcacataagggaaactgaggcccagcaagaggcactaacttg----tcAACCCATTTATGTGGGAGAAGACAAAAGTTTAAACTTTTGAATGTAAAAAGGATGATTTGTTGTGGAAAAACTGTAAATCAGAAATTTGAA-------TAAGAGATTCTTAAATCTT---TTCCTCTCCATTTTGCAAC--------------tttttttttttttttttttaacagggattt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140249908 495 - 143122389 --AAAAAAAAATTCTATACAGTCCGTGT-------GAAGTCTTGATGGGGCACTGAGCACTGTGTAGGGTCCGTCCTGAAAGAGGCA-GCTGTGAAAATTAGGCAGAAACAGTGAAAACACGGACGTGACCAGAAGCCAGTGGTCTTTGCCTCCACCTGCTCTTCCCAGGGTGCGAGTTGTCCCGGGG-----------TTTTACATCAGGAAGAAGGTGACATTTCACGCC-ACACACTGGCAAAGAGGAAACAGTGTCCACATCCCTCACTGGGGAATTTTctcgaagaccgtcttgt----cctgtcctctcattttgcacataa-ggaaactgaggcccagcaaggggcactaacttg----tcAACCCACTTATGTGGGAGAAGACAAAAATTTAAACTTTTGAATGTAAAA--GATGATTTGTTGTGG-AAAACTGTAAATCAG-AATTTGAA-------TAAGAGATTCTT-AATCTT---TTCCAC-CCATGTTGCAACT--------Attttttttttttttttttttttaaacaggg-ttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16961124 494 - 229590362 aaaaaaaaaaattCTATTCTGTCCTTGT-------GAAGTCTTGATGGGGCATTGAGCACTGTGTAGAGTCCGTCCTGAAAAAGGCA-GCTGCGAAAATGAGGCAGAAACAGTGAAAACATGGACATGACCAGAACCCAGTGTTCCTTGGCTCCACCCGCTCTTCCCAGGGTGCGAGTTGTCCTGGGG-----------TTTTACATCACGAAGAAGATGGCGCTTCATGCC-ACACACTGGCAAAGAGGAAACAGTGTCCACATCCCTCACTGAGGCATTTTctcgaagaccatcttgt----cctgtcctctcattgtgcacataa-ggaaactgaggtgcagcaagaggcactaacttg----TTGACCCACTTATGTGGGAGAAGACAAAAGTTTAAACTTTTGAATGTAAAA--GATGATTTGTTGTGG-AAAACTGTAAATCAG-AATTTGAA-------TAAGAGATTCTT-AATCTT--CCCCCCC-CCATTTTGCAACA------------ttttttttttttttttccgagacagag-ttt i rheMac3.chr1 I 718 C 0 s macFas5.chr1 223724410 497 - 227556264 AAAAAAAAAAATTCTATTCTGTCCTTGT-------GAAGTCTTGATGGGGCATTGAGCACTGTGTAGAGTCCGTCCTGAAAAAGGCA-GCTGCGAAAATGAGGCAGAAACAGTGAAAACATGGACATGACCAGAACCCAGTGGTCCTTGGCTCCACCCGCTCTTCCCAGGGTGCGAGTTGTCCTGGGG-----------TTTTACATCACCAAGAAGATGGCGCTTCATGCC-ACACACTGGCAAAGAGGAAACAGTGTCCACATCCCTCACTGAGGCATTTTctcgaagaccatcttgt----cctgtcctctcattgtgcacataa-ggaaactgaggcgcagcaagaggcactaacttg----TTGACCCACTTATGTGGGAGAAGACAAAAGTTTAAACTTTTGAATGTAAAA--GATGATTTGTTGTGG-AAAACTGTAAATCAG-AATTTGAA-------TAAGAGATTCTT-AATCTTCCCCCCCCC-CCATTTTGCAACA-----------tttttttttttttttttccgagacagag-ttt i macFas5.chr1 I 3 C 0 s papAnu2.chr1 16774356 504 - 220367699 aaaaaaaaaaattctattctgTCCTTGT-------GAAGTCTTGATGGGGCATTGAGCACTGTGTAGAGTCCGTCCTGAAAGAGGCA-GCTGCGAAAATGAGGCAGAAACAGTGAAAACATGGACATGACCAGAACCCAGTGGTCCTTGGCTCCACCTGCTCTTCCCAGGGTGCGAGTTGTCCTGGGG-----------TTTTACATCACGAAGAAGATGGCGCTTCATGCC-ACACACTGGCAAAGAGGAAACAGTGTCCACATCCCTCACTAAGGCATTTTCTCGAAGACCATCTTGT----CCTGTCCTCTCATTGTgcacataa-ggaaactgaggcgcaGCAAGAGGCACTAACTTG----TTGACCCACTTATGTGGGAGAAGACAAAAGTTTAAACTTTTGAATGTAAAA--GACGATTTGTTGTGG-AAAACTGTAAATCAG-AATTTGAA-------TAAGAGATTCTT-AATCTT---Tccccc-ccAttttgcaacattt-ttttttttttttttttttttttttccgagacagag-ttt i papAnu2.chr1 I 5 C 0 s chlSab2.chr25 82572202 492 + 85787240 aacaaaaaaaATTCTATTCTGTCCTTGT-------GAAGTCTTGATGGGGCATTGAGCACTGTGTAGAGTCCGTCCTGAAAGAGGCA-GCTGCGAAAATGAGGCAGAAACAGTGAAAACATGGACGTGACCAGAACCCAGTGGTCCTTGGCTCCACCCGCTCTTCCCAGGGTGCGAGTTGTCCTGGGG-----------TTTTACATCAGGAAGAAGATGACGCTTCATGCC-ACACACTGGCAAAGAGGAAACAGTGTCCATATCCCTCACTGAGGCATTTTctcgaagaccatcttgt----cctgtcctctcattgtgcatataa-ggaaactgaggcgcagcaagaggcactaacttg----TTGACCCACTTATGTGGGAGAAGACAAAAGTTTAAACTTTTGAATGTAAAA--GATGATTTGTTGTGG-AAAACTGTAAATCAG-AATTTGAA-------TAAGAGATTCTT-AATCTT-TCCCCCCC-CCATTTTGCAACt---------------tttttttttttttccaagacagag-ttt i chlSab2.chr25 I 20 C 0 s calJac3.chr19 14256411 472 - 49578535 -TTAAAAAAAATTGTATCTAGTCCTTGT-------GAAGTCTTAATGAGGCATTGAGCACTGCGTGGGGTCCATCCTGAAAGATGCA-GTTGTGAAAATGATGCAGACCCAGTGAAATCATGGAAGTGACCAGGACCCAGTGGTCCTTGGCTCCACTTAGTCTTCCCAGAGTGCGAGATGTCCC-GGG-----------TTTTACATCAGGAAGAAGAGGATGCTTCATGCC-ACACACGGGCAAATAGGAAACAGTGTCCACATCCCTCATgaaggaattttcttgaagaccatcttgt----cctgtcctctcattttccacacga-ggaaactgaggcccagtgagaggcactaacttg----tcAACTCATTTATGTGGCAGAAGATAAACATTTAAACTTTTGAATGTAAAA--GATGGTTTCTTGTGG-AAAACTGTAAATCAG-AATTTGAA-------TAAGAGATTCTT-ATTGTT---TTCC-C-CCATTCTGCAAGG---------------TTTTGTTTTTTT---------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178828171 426 + 195471971 ---------GGTTTTACATAATTCCTTTTTGCTTCAGAGTCTGGGGTGGACGTTGAACACTGCATC--GTCCATGCTG--AGAGGGA-GGGGAGGGGACGATGCAGAGAGGCCAAGAACGTGGAAATGAGGAGACTCCA-TGTGCCTGGTCCTGGCCACTTCTTCTCTGTGCACAAATTGTCCTAGAGGACAGTGCCCATGCTATGTCAGAAAGGTGACAGTGCCCAAGGCT-GGCCCCCATCAGACAACACATACTGTTCCCAATCT--------GAATCTTCATAAAAGCCACTCCGTGGAGCCTGTACCTTTGATGTG----TAA-GGAGGCTAAGGCACGGGGAGGGGAGC-AATTTGAGTAGCCATCCATCCATG-GGCAGAAGACACGGGTTGAAGATTTGGAATG-----------------------AAAAC--TAAATCAG-AGTTGGAATTCACACTAAGGCAGCCTT-CATCT------------------------------------------------------------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36403948 463 + 80974532 -TTCCACATAATTTTGGTTAGTGCCTGG-------GAGGTTCTGACTGGGTGTTGGGCACAGTGTGGGATCCATCCTGCATAATGAATGCCATGCAGAGGAGGCAGAAACATCGAGAACGTCCGAATGACAAGACCCCAGCGGTCCTTGCCTC-ACTTACTCCATC---------------------------------TTCTCTGT----GAGAAGATGCTGCCTTGTGCTGGCACCGTGGCAGACAGCAAGTGCACTTGACACTCCTCACTaaggaagcttctcaaagacgggctcat----cagatcctctcctccggaatctta-ggaaaccgaggcccaacaagctgaagtaactta-------acccaTTTATGTGGAAGAAGAGAGAAGTTTTAACTTAAGAA---------GATGATCGGTCATA--AAGATTTTAAGGCAT-AATTTAAA-------TGAAGGATTATT-AATCTT---TTCC---CCAATTTGTGATTTTTAGCCTCAATTTTACCAGCTTTTTTTTGGAG---GGG-TTT i canFam3.chr7 C 0 I 282 a score=173388.000000 s hg38.chr1_KI270759v1_alt 243076 75 + 425601 cac-tcttgtt--gcccaggctag-agtgcaatggca-caatctcagctcactgcaacctc---cgcctcccggtttcaag-ca s panTro4.chr1 224998575 75 + 228333871 cac-tcttgtt--gcccaggctag-agtgcaattgca-caatctcagttcactgcaacctc---cgcctcccgggttcaag-ca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226365138 84 - 229942017 cacttcttgttgcgccagggctggcagtgcaatggtagcaatctcagttcactgtaacctcccaccctccccgggttcaagcca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140250403 75 - 143122389 cac-tcttgtt--gcccaggctgg-agtgcaatggtg-caatctcggctcactgcaacctc---cgcctcccaggttcaag-cg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16961618 75 - 229590362 tac-tcttgtc--gcccaggctgg-agtgcaatggtg-caatctgggcttactgcaacctc---cgcctcctgggttcaag-cg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223724907 75 - 227556264 tac-tcttgtc--gcccaggctgg-agtgcaatggtg-caatctgggcttactgcaacctc---cgcctcctgggttcaag-cg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16774860 75 - 220367699 tac-tcttgtc--gcccaggctgg-agtgcaatggtg-caatctgggcttactgcaacctc---cgcctcctgggttcaag-cg i papAnu2.chr1 C 0 I 181 s chlSab2.chr25 82572694 75 + 85787240 cat-tcttgtc--acccagtctgg-agtgcaatggtg-caatctgggctcactgcaacctc---cacctcccaggttcaag-cg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14256883 64 - 49578535 ----TTTTTTT----------tgg-agtgcaatggtg-cgatctcaggtcactgcaacctc---tacctcctgggttcatg-cg i calJac3.chr19 C 0 C 0 e mm10.chr1 178828597 0 + 195471971 C e canFam3.chr7 36404411 282 + 80974532 I a score=390544.000000 s hg38.chr1_KI270759v1_alt 243151 147 + 425601 attctcctgcctcagcctcccgagtagctgagattacaggcacccgccaccatgcctggctaact-ttttgtatttttagtagaggtggggtttca-ccat--gttggccaggctggtc---aactcc-tgacgt-cagg-tgatccacc--cgccttg s panTro4.chr1 224998650 147 + 228333871 attctcctgcctcagcctcccgagtagctgagattacaggcgcccgccaccatgcctggctaact-ttttgtatttttagtagaggcggggtttca-ccat--gttggccaggctggtc---aactcc-tgacgt-cagg-tgatccacc--cgccttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226365222 155 - 229942017 attctcctgcctcagcctcccaagtagctgagattgcaggtgcccacaaccacgcctggctaact-ttttgtatttttagtagagacggggtttcacccattggttggccaggctggtc---aactccntgacctncaggntgatccaccnncaccttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140250478 148 - 143122389 attctcctgcctcagcctcccgagtagctgagattacaggtgcctgccaccatgcctggctaattgttttttatttttagtagagacggggtttca-ccat--attggccaggctggtc---aactcc-tgacct-cagg-tgatccacc--cgcgttg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16961693 150 - 229590362 attctcctgcctgagcctcccaagtagctgggattacaggtgcccatcaccacgcctggctaatt-ttttgtatttttagtagagatggggtttca-cctt--gttggccaggctggtcttgaactcc-tgacct-cagg-tgatccacc--tgccttg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223724982 150 - 227556264 attctcctgcctgagcctcccaagtagctgggattacaggtgcccatcaccacgcctggctaatt-ttttgtatttttagtagagatggggtttca-cctt--gttggccaggctggtcttgaactcc-tgacct-cagg-tgatccacc--tgccttg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16775116 150 - 220367699 attctcctgcctcagcctcccgagtagctgggattacaggcgcccgccacctcgcccggctagtt-ttttttgtttttagtagagacggggtttca-ccgt--gttagccaggatggtcttgaactcc-tgacct-cagg-tgatccacc--tgccttg i papAnu2.chr1 I 181 C 0 s chlSab2.chr25 82572769 150 + 85787240 attctcctgcctcagcctcccgagtagctgagattacaggtgcccaccaccacacctggttaact-ttttgtagttttagtagagatggggtttca-ccat--gttggccaggctggtcttgaactcc-tgacct-cagg-tgatccacc--cgacttg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14256947 150 - 49578535 attctcctgcctcagcctccagagtaacggggattacaggtgcgtgccactatgcccagctcatt-ttttgaatttttagaagagacagggtttca-tcat--gttggtcgggctggtctcaaacttc-caacca-cagt-tgatccacc--taccttg i calJac3.chr19 C 0 C 0 e mm10.chr1 178828597 0 + 195471971 C e canFam3.chr7 36404411 282 + 80974532 I a score=412589.000000 s hg38.chr1_KI270759v1_alt 243298 172 + 425601 gcttccc--aaagtgcttgga--ttacaggtgtgag-tcacagcgccctg----ccCCATTTTGCAACTTTTGATCTC-AATTCTGCTGGCTC--TA-TTTTAAGGTATTAAATGGAG-ATGGTAGGCTtgtgtatgtgtgtg------------------------------------------------------------cacgtgtgtgtgt--gt--aagtgtgt---AGGAGGAGGAGAAGAAAGAT s panTro4.chr1 224998797 170 + 228333871 gcttccc--aaagtgcttgga--ttacaggtgtgag-ccacagcgccctg----ccCCACTTTGCAACTTTTGATCTC-AATTCTGCTGGCTC--TA-TTTTAAGGTATTAAATGGAG-ATGGTAGGCTtgtgtatgtgtgtg------------------------------------------------------------cacgtgtgtgtgt------aagtgtgt---AGGAGGAGGAGAAGAAAGAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226365377 187 - 229942017 gcttccccaaaagtgctgggaatttacaggtgtgagcccacagtgcccCAGC--CCCCATTTTGCAACTTTTGATCTCAAATTCTGCTGGCTC--TATTTTTAAGGTATTAAATGGAGAATGGTAGGCTtgtatatgtgtgtg------------------------------------------------------------cacatgtgtgtgtgtgt--aagtgtgtAGGAGGAGGAGGAGAAGAAAGAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140250626 173 - 143122389 gcctccc--aaagtgctggga--ttacaggtgtgag-ccaccgcacccgg----ccCCATTTTGCAACTTTTGATCTC-AATTCTACTGGCTC--TA-TTTTAAGGTATTAAATGGAG-ATGGCAGGCTTGTATATGTGTGTG------------------------------------------------------------CACATGTATGTGAGTGT--AAGTGTGT---AGGAGGAAGAGGAG-AAGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16961843 175 - 229590362 gcctccc--aaagtgctggga--ttacaggcgtgag-ccaccacacctgg----ccCCATTTTGCAACTTTTGATCTC-AATTCTACTGGCTC--TA-TTTTAAGGTATTAAATGGAG-ATGGTAGGCTTGTACAtgtgtgtg------------------------------------------------------------cgcgtgtgtgtgt--gt--aagtgtgtAGTAGTAGTAGGAGAAGAAAGAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223725132 173 - 227556264 gcctccc--aaagtgctggga--ttacaggcgtgag-ccaccacacctgg----ccCCATTTTGCAACTTTTGATCTC-AATTCTACTGGCTC--TA-TTTTAAGGTATTAAATGGAG-ATGGTAGGCTTGTACAtgtgtgt--------------------------------------------------------------gcgtgtgtgtgt--gt--aagtgtgtAGTAGTAGTAGGAGAAGAAAGAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16775266 173 - 220367699 gcctccc--aaagtgctggga--ttacaggcgtgag-ccaccacacctag----ccccaTTTTGCAACTTTTGATCTC-AATTCTACTGGCTC--TA-TTTTAAGGTATTAAATGGAG-ATGGTAGGCTtgtacatgtgtgt--------------------------------------------------------------gcgtgtgtgtgt--gt--aagtgtgtagTAGTAGTAGGAGAAGAAAGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82572919 175 + 85787240 gtctccc--aaagtgctggga--ttacaggtgtgag-ccaccgcacccag----ccCCATTTTGCAACTTTTGATCTC-AATTCTACTGGCTC--TA-TTTTAAGGTATTAAATGGAG-ATGGTAGGCTtgtatatgtgtgtg------------------------------------------------------------cacgtgtgtgtgt--gt--aagtgtgtAGTAGTAGTAGGAGAAGAAAGAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14257097 163 - 49578535 gcctccc--aaagggctggga--gttcaggtgtgag-ccaccacacccag-----ccCGTTTTGCACCTTTTGATCTC-AATTTTACCGGCTC--TA-TTTTAAGGTATTAAATGGAG-ACAGTAGGCTTGTATATGTGTGTG------------------------------------------------------------CACTTGTGTGTAT------AAGTG---------AGGAGGAGGAGAGAGAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178828597 192 + 195471971 --------------------------------------------------GCTTCCCAAATCTGTTATTGTTCACCTC-AAATCTACTGGCTCTGTA-TTTTTAGG---TGAATGAAA-ATAATGTGTGTGTGCACGCGAGTGcacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacaTGCATGTGT--GTCCGAGTGCAT---CCATGCATGTATGTAAAGAG i mm10.chr1 C 0 C 0 e canFam3.chr7 36404411 282 + 80974532 I a score=2448731.000000 s hg38.chr1_KI270759v1_alt 243470 626 + 425601 AATTTTTATAAGGGGACTTTTTAAAAGCTAGCAACCTTTATCATAATTGGTGGACAGCCTTGGGGCCTCCTGGAATACCTGTAATTCCTAATTAGCATCCTGATTTATGGAATAAAAACATGAGAT-AAAATGAGGGAATTCTCTCTGGAATAAATGCCACTGTCTCAATTAACCAAAGGGCA--ATAAGATGGATTATAATGCCAGAATAGGGCTTTTGATCAGTCTTTGTCC--AAAAACCACATTTTAGTTAAGCTCAGCAC-AATTAGACCATTACTGATATCAGGAGAATGGAAACAGTAGGTATATTTTAAGCTAACATTCCCAGCATCTTATCTTTCTATAGTCTTTCTC-TTGTTAATGGATGAAAGGAAAGTTAAGCATGATTTGTTATAATTATCCCATTAAAATGGGATCGATAGAAATATTTTATGTTAAAAAAATGGTGAGTCC-AAACTGCTGAGTTAATTAG-AAAGTTTTCCTTTGTGCCTCAAACAGAATAGGAAATGCT-GTTCTTGCCTACTG-AATTG-TTCGTATCAAATAG-AAAA-TATTTGAAT-CCCTTTCT---AATGCCTCATTGAACC-AAAATGTATTATTATGGAGGGGGAGAATAATTCCG-ATACAttct-------------tttt s panTro4.chr1 224998967 626 + 228333871 AATTTTTATAAGGGGACTTTTTAAAAGCTAGCAACCTTTATCATAATTGGTGGACAGCCTTGGGGCCTCCTGGAATACCTGTAATTCCTAATTAGCATCCTGATTTATGGAATAAAAACATGAGAT-AAAATGAGGGAATTCTCTCTGGAATAAATGCCACTGTCTCAATTAACCAAAGGGCA--ATAAGATGGATTATAATGCCAGAATAGGGCTTTTGATCAGTCTTTGTCC--AAAAACCACATTTTAGTTAAGCTCAGCAC-AATTAGTCCATTACTGATATCAGGAGAATGGAAACAGTAGGTATATTTTAAGCTAACATTCCCAGCATCTTATCTTTCTATAGTCTTTCTC-TTGTTAATGGATGAAAGGAAAGTTAAGCATGATTTGTTATAATTATCCCATTAAAATGGGATCGATAGAAATATTTTATGTTAAAGAAATGGTGAGTCC-AAACTGCTGAGTTAATTAG-AAAGTTTTCCTTTGTGCCTCAAACAGAATAGGAAATGCT-GTTCTTGCCTACTG-AATCG-TTCGTATCAAATAG-AAAA-TATTTGAAT-CCCTTTCT---AATGCTTCATTGAACC-AAAATGTATTATTATGGAGGGGGAGAATAATTCCG-ATACAttct-------------tttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226365564 638 - 229942017 AATTTTTATAAGGGGACTTTTTAAAAGCTAGCAACCTTTATCATAATTGGTGGACAGCCTTGGGGCCTCCTGGAATACCTGTAATTCCTAATTAGCATCCTGATTTATGGAATAAAAACATGAGGC-AAAATGAGGGAATTCTCTCTGGAATAAATGCCACTGTCTCAATTAACCAAAGGGCA--ATAAGATGGATTATAATGCCAGAATAGGGCTTTTGATCAGTCTTTGTCCCAAAAACCTACATTTTAGTTAAGCTCAGCAC-AATTAGACCATTACTGATATCAGGAGAATGAAAATAGTAGGTATATTTTAAGCTAACATTCCCAGCATCTTATCTTTCTATAGTCTTTCTCATTGTTAATGGATGAAAGGAAAGTTAAGCATGATTTGTTATAATTATCCCATTAAAATGGGATTGATAGaaatattttatattaaaaaaattGGGAGTCCAAAACTGCTGACTTAATTAGAAAAGTTTTCCTTTGTGCCTCAAACAGAATAGGAAATGCTNGTTCTTGCCTACTGNAATCGTTTCGTATCAAATAG-AAAAGTATTTGAATCCCCTTTCT---AATGCTTCATTGAACCAAAAATGTATTATTATGGAGGGGGAGAATAATTCTGAATACGTTCT-------------TTTT i ponAbe2.chr1 C 0 I 9 s nomLeu3.chr5 140250799 623 - 143122389 AATTTTTATAAGGGGACTTTTTAAAAGCTAGCAACCTTTATCATAATTGGTGGACAGCCTTGGGGCCTCCTGGAATACCTGTAATTCCTAATTAGCATCCTGATTTATGGAATAAAAACATGAGAT-AAAATGAGGGAATTCTCTCTGGAATAAACGCCACTGTCTCAATTAACCAAAGGGCA--ATAAGATGGATTATAATGCCAGAATAGGGCTTTTGATCAGTCTTTGTCC--AAAAACCACATTTTAGTTAAGCTCAGCAC-AATTAGACCATTACTGATATCAAGAGAATAGAAATAGGAGGTATATTTTAAGCTAACATTCCCAGCATCTTATCTTTCTATAGTCTTTCTC-TTGTTAATGGATGAAAGGAAAGTTAAGCATGATTTGTTATAATTATCCCATTAAAATGGGATTGATAGAAATACTTTATATTAAAAAAA-GGTGAGTCC-AAACTGCTGAGTTAATTAG-GAAGTTTTCCTTTGTGCCTCAAACAGAATAGGAAATGCC-GTTCTTGCCTACTG-AATCG-TTCGTATCAAATAG-AAAA-TATTTGAAT-CCCTTTCT---AACGCTTCATTGAACC-AAAATGTATTATTATGGAGGGGGAGAATAA--CTG-AGACAttct-------------tttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16962018 627 - 229590362 AATTTTTATAAGGGGACTTTTTAAAAGCTAGCAACGTTTATCATAATTGGTGGACAGCCTTGGGGCCTCCTGGAATACCTGTAATTCCTAATTAGCATCCTGATTTATGGAATAAAAACATGAGATAAAAATGAGGGAATTCTCTCTGGAATAAATGCTACTGTCTCAATTAACCAAAGGGCA--ATAAGATGGATTATGATGCCAGAATAGGGCTTTTGATCAGTCTTTGTCC--AAAAACCACATTTTAGTTAAGCTCAGCAC-AATTAGACCATTACTGATATAAAGAGAATGGAAATAGTAGGTATATTTTAAGCTAACATTCCCAGCATCTTATCTTTCTGTAGTCTTTCTC-TTGTTAATGGATGAAAGGAAAGTTAAGCATGATTTGTTATAATTATCCCCTTAAAATGGGATTGATAGAAATATTTCATATTAAAAAAATGGTGAGTCC-AAACTGCTGAGTTAATTAG-AAAGTTTTCCTTTGTGCCTCAAACAGAATAGGAAATGCT-GTTCTTGCCTGCTG-AATCG-TTCGTATCAAATAG-AAAA-TATTTGAAT-CCCTTTCT---AATGCTTCATTGAACC-GAAATGTATTATTATGAAGAGGGAGAATAATTCTG-ATACATTCT-------------TTTT i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223725305 627 - 227556264 AATTTTTATAAGGGGACTTTTTAAAAGCTAGCAACGTTTATCATAATTGGTGGACAGCCTTGGGGCCTCCTGGAATACCTGTAATTCCTAATTAGCATCCTGATTTATGGAATAAAAACATGAGATAAAAATGAGGGAATTCTCTCTGGAATAAATGCTACTGTCTCAATTAACCAAAGGGCA--ATAAGATGGATTATGATGCCAGAATAGGGCTTTTGATCAGTCTTTGTCC--AAAAACCACATTTTAGTTAAGCTCAGCAC-AATTAGACCATTACTGATATAAAGAGAATGGAAATAGTAGGTATATTTTAAGCTAACATTCCCAGCATCTTATCTTTCTGTAGTCTTTCTC-TTGTTAATGGATGAAAGGAAAGTTAAGCATGATTTGTTATAATTATCCCATTAAAATGGGATTGATAGAAATATTTCATATTAAAAAAATGGTGAGTCC-AAACTGCTGAGTTAATTAG-AAAGTTTTCCTTTGTGCCTCAAACAGAATAGGAAATGCT-GTTCTTGCCTGCTG-AATCG-TTCGTATCAAATAG-AAAA-TATTTGAAT-CCCTTTCT---AATGCTTCATTGAACC-GAAATGTATTATTATGAAGAGGGAGAATAATTCTG-ATACATTCT-------------TTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16775439 627 - 220367699 AATTTTTATAAGGGGACTTTTTAAAAGCTAGCAACCTTTATCATAATTGGTGGACAGCCTTGGGGCCTCCTAGAATACCTGTAATTCCTAATTAGCATCCTGATTTATGGAATAAAAACATGAGATAAAAATGAGGGAATTCTCTCTGGAATAAATGCTACTGTCTCAATTAACCAAAGGGCA--ATAAGATGGATTATGATGCCAGAATAGGGCTTTTGATCAGTCTTTGTCC--AAAAACCACATTTTAGTTAAGCTCAGCAC-AATTAGACCATTACTGATATAAAGAGAATGGAAATAGTAGGTATATTTTAAGCTAACATTCCCAGCATCTTATCTTTCTGTAGTCTTTCTC-TTGTTAATGGATGAAAGGAAAGTTAAGCATGATTTGTTATAATTATCCCATTAAAATGGGATTGatagaaatatttcatattaaaaaaatggTGAGTCC-AAACTGCTGAGTTAATTAG-AAAGTTTTCCTTTGTGCCTCAAACAGAATAGGAAATACT-GTTCTTGCCTGCTG-AATCG-TTCgtatcaaatag-aaaa-tatttgaat-cccTTTCT---AATGCTTCATTGAACC-GAAATGTATTATTATGAAGAGGGAGAATAATTCtg-atacattct-------------tttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82573094 626 + 85787240 AATTTTTATAAGGGGACTTTTTAAAAGCTAGCAACCTTTATCATAATTGGTGGACAGCCTCGGGGCCTCCTGGAATACCTGTAATTCCTAATTAGCATCCTGATTTATGGAATAAAAACATGAGATAAAAATGAGGGAATTCTCTCTGGAATAAATGCCACTGTCTCAATTAACCAAAGGGCA--ATAAGATGGATTATGATGCCAGAATAGGGCTTTTGATCAGTCTTTGTCC--AAAAACCACATTTTAGTTAAGCTCAGCAC-AATTAGACCATTACTGATATAAAGAGAATGGAAATAATAGGTATATTTTAAGCTAACATTCCCAGCATCTTATCTTTCTATAGTCTTTCTC--TGTTAATGGATGAAAGGAAAGTTAAGCATGATTTGTTATAATTATCCCATTAAAATGGGATTGATAGAAATATTTCATATTAAAAAAATGGTGAGTCC-AAACTGCTGAGTTAATTAG-AAAGTTTTCCTTTGTGCCTCAAACAGAATAGGAAATGCT-GTTCTTGCCTACTG-AATAG-TTCGTATCAAATAG-AAAA-TATTTGAAT-CCCTTTCT---AATGCTTCATTGAACC-AAAATGTATTATTATGGAGAGGGAGAATAATTCTG-ATACAttct-------------tttt i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14257260 621 - 49578535 AATTTTTATAAGGGGACTTTTT--AAGCTAGCAACCTTTGTCATAATGGGTGGACAGGCCTGGTGCCTCCCGGAATACC-GTGTTTCCTAATTAGCATCCTGATTTATGGAATAAAAACATGAGAT-AAAATGAGGGAATTCTCTCTGGAATAAATGCCACCGTCTCAATTAACCAAAGGGCA--ATAAGATGGATTAT-ATGCCAGAATAGGGCTTTTCATCAGTCTTTGTTC--AAAAACCACATTTTAGTTAAGCTCAGCAC-AATTAGACAATTACTGAAATCAAGAAAATGGAAA---TAGGTGGACTTTAAGTTAATGTTCCCAGCATCTTATCTTTCTAT-GTCTTTCTC-TTGCTAATGGATGAAAGGAAAATTAATCATGATTTGTTATAACTATCCCGTTAAAATGGGATTGATAGAAATATTTTATATTAAAGAAATGGTGAGCCC-AAACTGCTGAGTTAATTAC-AAAGTTTTCCTTTGTGCCTGAAACAGAATAGGAAATGCT-GTTCTTGCCTACTG-AATGA-TTTCTGTCGAATAG-AAAA-CACTTGAAT-CCCTTTCTAGAAATGCTTCACTGAACT-GAAATGTATTATTATGGAGGGGGAGAAGAATTCTG-ATACAttct-------------tttt i calJac3.chr19 C 0 I 8 s mm10.chr1 178828789 592 + 195471971 CATTTTTCTAAATAGACTTTTGAAAGGCTAGCAACTTTTCTTGTGATTGG-GGATGGTCTTGGAGCTTCTTGGGATCCCCGTAATTCCCAATTAGCACTGCAACTTGTAGAATAAAAACAAGAAGT-AACATGAGGG-ATTCTCTCTGGAATAAATGTCACTGTTTCAATTAACCAAAGAGCACTATAAGATGCATTATAAGGCCAGGACAGGACTTTTTATCAGTCTTAGTCC--AAAACCTACCTTTTA-TCAATCCGAGCACAAATGAGACAATCGTCAATGTCAAAAGAATGG------CAGCTCTGTTTT------ATATTTCTAATATCTTA-AATCCTAT-GTCTCTCTC---ACTAGTGGCT-----GAAAATTAATTATAATTTGCTATAATTGTCACATTTAAATGCAATTGCTACCAAGGTTTTATA--AAGGAAATAGGAAGTAT-AA--TGCTGCTTGTGTTGG-CAAGTCTGTCTTGGCGCCT--AACCCGCTAGTGGACGCT-GTGCTTGCCTGTTG--CTGA-TTTGCATCAAATAG-AAAA-CATTTCAG--ACCTTCCT---GATGCTTCAGTAAACT-AAAATGTATCATTATGGATGTG--AAATCATTTGG----CATGTG-------------TTTT i mm10.chr1 C 0 C 0 s canFam3.chr7 36404693 615 + 80974532 gatcccTCTGAGAGGACTTCTTAAAGAGTAGGAACCTAGACCATAATT---AGATAGGTTTGGGGCCTCCCAGAATACCTGTAA-TCCTCATTAGCATCCTGATTTATGGAATGAAAGCACAAGAT-AAAATGAGGGAATTCTCTCTGGAATAAATGCCACGTTCTCAATTAACCAAAGGGCA--ATAAGATGGATGATAATGCCAGAATAGGGCTTTTGATCATTCTTAGTCC--AAAACCCACATTTTGCTTGGGCTTAGCAC-AATTA--------CTGATATCAAGAGAATGGGAATAGTAGGTATATTTCAAGCTAACATCTCTCGCATCTTATCTTTCTAT-GTCTTTCTC-TTGCTAATGGCTGCCAGGAAAGTTAATCATGATTTGCTATAATTGTCCCATTAAAATGGCATTGATAGTAATGTTTTGT---AAAAAAATGATGAGTCC-AAACTACTGAGTTAATTAG-AAAGTTTTCCTTTGTGCCT----CTGAGTAGGAAATGCT-ATTCCTATGTCCTG-AGTGA-C-----TCAAATAACAAAA-CACTTGAAT-TCCTTTCT---AATGCTTCATTGAACT-GAAATAAATCCTTACGAAGGGGGGAGAGCCTTCTG-CTGCGTTCTTAAGGGCAAACGATTTT i canFam3.chr7 I 282 C 0 a score=6279.000000 s hg38.chr1_KI270759v1_alt 244096 5 + 425601 -ttttt s panTro4.chr1 224999593 4 + 228333871 -tttt- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226366211 4 - 229942017 -tttt- i ponAbe2.chr1 I 9 C 0 s nomLeu3.chr5 140251422 4 - 143122389 -ttct- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16962646 4 - 229590362 -Cttt- i rheMac3.chr1 I 1 I 1 s chlSab2.chr25 82573721 4 + 85787240 -cttt- i chlSab2.chr25 I 1 C 0 s calJac3.chr19 14257889 4 - 49578535 -tttt- i calJac3.chr19 I 8 C 0 s mm10.chr1 178829381 4 + 195471971 -TTTT- i mm10.chr1 C 0 I 1 s canFam3.chr7 36405308 5 + 80974532 TCTTT- i canFam3.chr7 C 0 C 0 e papAnu2.chr1 16776066 0 - 220367699 C e macFas5.chr1 223725932 0 - 227556264 C a score=3346.000000 s hg38.chr1_KI270759v1_alt 244101 3 + 425601 tga s panTro4.chr1 224999597 2 + 228333871 -ga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226366215 2 - 229942017 -ga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140251426 2 - 143122389 -aa i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82573725 2 + 85787240 -ga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14257893 3 - 49578535 tga i calJac3.chr19 C 0 C 0 s mm10.chr1 178829386 2 + 195471971 -AA i mm10.chr1 I 1 C 0 s canFam3.chr7 36405313 3 + 80974532 CGA i canFam3.chr7 C 0 I 301 e rheMac3.chr1 16962650 1 - 229590362 I e papAnu2.chr1 16776066 0 - 220367699 C e macFas5.chr1 223725932 0 - 227556264 C a score=16627.000000 s hg38.chr1_KI270759v1_alt 244104 16 + 425601 gac-agaatct-tgctct s panTro4.chr1 224999599 16 + 228333871 gac-agaatct-tgctct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226366217 17 - 229942017 gacgggaatct-tgctct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140251428 16 - 143122389 gat-ggaatct-tgctct i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82573727 16 + 85787240 gat-ggaatct-tgctct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14257896 16 - 49578535 gac-agagtct-tgctct i calJac3.chr19 C 0 C 0 s mm10.chr1 178829388 17 + 195471971 AGC-AAGATATGCATTCT i mm10.chr1 C 0 I 154 e canFam3.chr7 36405316 301 + 80974532 I e rheMac3.chr1 16962650 1 - 229590362 I e papAnu2.chr1 16776066 0 - 220367699 C e macFas5.chr1 223725932 0 - 227556264 C a score=122926.000000 s hg38.chr1_KI270759v1_alt 244120 118 + 425601 gtcgcccagg--ctggaatgcaatggcacgatcttggctcactgcaaactctgcttcccagattcaagcgattctcctgcctcag-cctcccaagtagctgggatta-caggcat-atgccac s panTro4.chr1 224999615 118 + 228333871 gtcgcccagg--ctggaatgcaatggcacgatcttggctcactgaaaactctgcttcccagattcaagcgattctcctgcctcag-cctcccaagtagctgggatta-caggcat-acgccac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226366234 123 - 229942017 gtcgcccaggtactggagtgtaatggcatcatcttggctcactgcaaactctgcttcccggattcaagtgattctcctgcctcagccctcccaagtagctgggactaccaggcacnacgccac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140251444 117 - 143122389 gtcgcccagg--ctggagtgcaatggcatgatcttggctcactgcaaactctgctt-ccggattcaagcgattctcctgcctcag-cctcccaagtagctgggatta-caggcac-acgccac i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82573743 118 + 85787240 gttgcccagg--ctggagttcagtggcacaatcttggctcactgcaaactctacctcccgggttcaagtaattctcctgcctcag-cctcccgagtagctgggatta-caggtgg-ttgccac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14257912 107 - 49578535 gtcgcccagg--ctagatcgcaatggcacaatctcagctcactgcaacctctgcctctcgggtacaagcaattctcctgcctcag-cctcctgagtagctgggatta-------------cac i calJac3.chr19 C 0 C 0 e mm10.chr1 178829405 154 + 195471971 I e canFam3.chr7 36405316 301 + 80974532 I e rheMac3.chr1 16962650 1 - 229590362 I e papAnu2.chr1 16776066 0 - 220367699 C e macFas5.chr1 223725932 0 - 227556264 C a score=19184.000000 s hg38.chr1_KI270759v1_alt 244238 18 + 425601 cacgctcagctaattttg s panTro4.chr1 224999733 18 + 228333871 cacgctcagctaattttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226366357 18 - 229942017 cacgcccagctaattttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140251561 18 - 143122389 catgcccagataattttg i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82573861 18 + 85787240 cacgcccggctaatttta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14258019 18 - 49578535 cacccctggctaattttg i calJac3.chr19 C 0 I 2 s canFam3.chr7 36405617 11 + 80974532 cactctcagcc------- i canFam3.chr7 I 301 C 0 e mm10.chr1 178829405 154 + 195471971 I e rheMac3.chr1 16962650 1 - 229590362 I e papAnu2.chr1 16776066 0 - 220367699 C e macFas5.chr1 223725932 0 - 227556264 C a score=3277.000000 s hg38.chr1_KI270759v1_alt 244256 6 + 425601 -tttttt s panTro4.chr1 224999751 6 + 228333871 -tttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226366375 6 - 229942017 -tttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140251579 6 - 143122389 -tttttt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223725932 5 - 227556264 --TCttt i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16776066 5 - 220367699 --tcttt i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82573879 6 + 85787240 -tttttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14258039 5 - 49578535 -ttttt- i calJac3.chr19 I 2 C 0 s canFam3.chr7 36405628 6 + 80974532 cttctt- i canFam3.chr7 C 0 C 0 e mm10.chr1 178829405 154 + 195471971 I e rheMac3.chr1 16962650 1 - 229590362 I a score=234337.000000 s hg38.chr1_KI270759v1_alt 244262 95 + 425601 agtaga--------------ga-gggggtttcaccatgttggccaggctggtcttgaactcctg-----------------------------acctcag--------------------gtgatccgcccgcctc-ggcttctcaa-----------------agtgctgggatta s panTro4.chr1 224999757 95 + 228333871 agtaga--------------ga-gggggtttcaccatgttggccaggctggtcttgaactcctg-----------------------------acctcag--------------------gtgatccgcccgcctc-ggcttctcaa-----------------agtgctgggatta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226366381 97 - 229942017 agtaga--------------gaggggggtttcaccatgttggccaggctggtctcgaactcctg-----------------------------acctcag--------------------gtgatctgcccaccttgggcttctcaa-----------------agtgctgggatta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140251585 95 - 143122389 agtaga--------------ga-gggggtttcaccatgttggccaggctggtctcgaactcctg-----------------------------acctcag--------------------gtgatccacccgcctc-ggcttctcaa-----------------agtgctgggatta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16962651 95 - 229590362 agtaga--------------ga-cggggtttcaccattttggccaggctggtctcaaagtcctg-----------------------------acctcag--------------------gtgatccggccgcctc-cgcctctcaa-----------------agtgctgggatta i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223725938 95 - 227556264 agtaga--------------ga-cggggtttcaccattttggccaggctggtctcaaagtcctg-----------------------------acctcag--------------------gtgatccggccgcctc-cgcctctcaa-----------------agtgctgggatta i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16776072 95 - 220367699 agtaga--------------ga-cggggtttcaccattttggccaggctggtctcaaactcctg-----------------------------acctcag--------------------gtgatccggccgcctc-cgcctctcaa-----------------agtgctgggatta i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82573885 95 + 85787240 agtaga--------------ga-tggggtttcaccattttggccaggctggtctcgaactcctg-----------------------------acctcag--------------------gtgatctgcccgcctc-tgcctctcaa-----------------agtgctgggatta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14258044 72 - 49578535 agtaga--------------ga-tgaggtttcaccatgttggccaggttggtctcgaactcctg-----------------------------gcctcaa--------------------gtgatccaactgcctt----------------------------------------- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36405634 174 + 80974532 aaaagggcactcatcccattga-gagagctccaccctcatggcctcattaccccagaggccctgcctcctaataccatttcctggggattagcatctcaacataggaatttgggAAAGGTGTAGTCCA-CAACACT-GAGCTCTCAATTCTGGCTTTGAATTTGAGTACTTGACTTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178829405 154 + 195471971 I a score=1841150.000000 s hg38.chr1_KI270759v1_alt 244357 618 + 425601 caggAAAAACAACCAAAAATAG--AACAATT-ACAGTAGCAC----C----GAGTGCTAGAGACAAATTTCCTGCCAAATCTCTTTTCCAGTTCCCTCAGTCTGCGTCTGTGTTCTGTGCCACAA-CCAAAGATTC-AGAT-ATCAATT-TTGTCCACTT-GTAGCTCATTTGAGATCTGTTAAGCAAC--AACAGTGAA-TGCTGGGTGGATTCGTT--AGTGGA-GCTCTG-TTCCAG-CTGTAGCTAAT-AAAG--------------------TTATTTTCTCGCTGAAAT-CGGTG-ATGGT-AAAATTG--G--TCTGTTTTCCAA-TGCTAGCTTCTT-CAGTTTCC--GCTGAGTTCTTTTCTCCTGGAGTGTGAGATCACAATGGCATGCCTTACAAAAGAGTGCTCTTGCCTGCTCCGTCCTGGCTGCTCCCAGGCCGACCCTGGCTCCTCACCAGCACC-------------------------CTGCTGTAAACGCTCAGCTGCCCCTTCCC-CTAGCAGCAGCGTCGGCACTACATTTAGGACCCTTTCTGTATGTACCCTGAAAACCCACCGGCG--CAGTGGTTAGGCTGGAGCAGCTCAGGCCAGCC-TGGGGCAAAAGG-CAGAGGAC-TGAGACCATGCAGTGAGATTGG-TGCAGT---CAGTATTGGTGGAGGAGCTGCTGGGGGCCAG s panTro4.chr1 224999852 617 + 228333871 caggAAAAACAACCAAAAATTG--AACAATT-ACAGTAGCAC----C----GAGTGCTAGAGACAAATTTCCTGCCAAATCTCTTTTCCAGTTCCCTCAGTCTGCCTCTGTGTTCTGTGCCACAA-CCAAGGATTC-AGAT-ATCAATT-TTGTCCACTT-GTAGCTCATTTGAGGTCTGTTAAGCAAC--AACAGTGAA-TGCTGGGTGGATTCGTT--AGTGGA-GCTCTG-TTCCAG-CTGTAGCTAAT-AAAG--------------------TTATTTTCTCGCTGAAAT-CGGTG-ATGGT-AAAATTG--G--TCTGTTTTCCAA-TGCTAGCTTCTT-CAGTTTCC--GCTGAGTTCTTTTCTCCTGGAGTGTGAGATCACAATGGCATGCCTTACAAAAGAGTGCTCTTGCCTGCTCCATCCTGGCTGCTCCCAGGCCGACCCTGGCTCCTCACCAGCACC-------------------------CTGCCGTAAATGCTCAGCTGCCCCTTCCC-CTAGCAGCAGCGTCGGCACTACATTTAGGACCCTTTCTGTATGTACCCTGAAAACCCAC-GGCG--CAGTGGTTAGGCTGGAGCAGCTCAGGCCAGCT-TGGGGCAAAAGG-CAGAGAAC-TGAGACCATGCAGTGAGATTGG-TGCAGT---CAGTATTGGTGGAGGAGCTGCTGGGGGCCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226366478 639 - 229942017 caggAAAAACAACCAAAAAATAGCAACAATTGACAGCAGCAC----T----GAGTGCTAGAGACAAATTTCCTGCCAAATCTCTTTTCCAGTTCCCTCAATCTGCCTCTGTGTTCTGTGCCACAACCCAAAGATTCAAGAT-ACCAATTGTTGTCCACTTGGTAGCTCAGTTGAGGTCTGTTAACCAACCAAACAGTGAA-TGCTGGGTGGATTCGTTTAGGTGGATGCTCTGTTTCCAGCCTGTAGCTAAT-AAAG--------------------TTATTTTCTCGCTGAAATCCGGTGAATGGTAAAAATTG--G--TCTGTTTTCCAA-TGCTGGCTTCCT-CAGTTTCC--GCTGAGTTCTTTTCTCCCGGAGTATGAGATCACAACGGCACGCCTTACAAAAGAGTGCTCTTGCCTGCTCCATCCTGGCTGCTCCCAGGCCGACCCTGGCTCCTCACCAGCACC-------------------------CTGTCATAAATGCTCAGCTGCCCCTTCCC-CTAGCAGCAGCATCGGCACTACATTTAGGACCCTTTCTGTATGTACCCTGAAAACCCAC-GGCGGCCAGTGGTTAGGCTGCAGCAGCTCAGGCCAGCT-TGGGGCAAAAGGCCAGAGAACGTGAGACCATGTAGTGAGATTGGTTTCAGT---CAGTATTGGTGGAGGAGCTGCTGGGGGCCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140251680 614 - 143122389 caggAAACACAACCAAAAATAG--AACAATT-ACAGTAGCAC----T----GAGTGCTAGAGACAAATTTCCTGCCAAATCTCTTTTCCAGTTCTCTCAGTCTGCCTCTGTGTTCTGTGCCACAA-CCAAAGATTC-AGAT-ATCAATT-TTGTTCACTT-GTAGTTCAGTTGAGGTCTGTTAACC-----AACAGTGAA-TGCTGGGTGGATTCGTT--AGCGGA-GCTCTG-TTCCAG-CTGTAGCTAAT-AAAG--------------------TTATTTTCTCGCTGAAAT-CGGTG-ATGGT-AAAATTG--G--TCTGTTTTCCCA-TGCTGGCTTCTT-CAGTTTCC--GCTGAGTTCTTTTCTCCTGGAGTGTGAGATCACAATGGCATGCCTTACAAAAGAGTGCTCTTGCCTCCTCCGTCCTGGCTGCTCCCAGGCCGACCCTGGCTCCTCACCAGCACT-------------------------CTGCCATAAGTGCTCAGCTGCCCCTTCCC-CTAGCAGCAGCATCGGCACCACATTTAGGACCCTTTCTGTATGTACCCTGAAAACCCAC-GGCG--CAGTGGTTAGGCTGGAGCAGCTCAGGCCAGCT-TGGGGCAGAAGG-CAGAGAAC-TGAGACCATGTAGTGAGATTGG-TTCAGT---CAGTATTGGTGGAAGAGCTGCTGGGGGCCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16962746 613 - 229590362 caggAAAAACAACGAAAAATAG--AACAATT-ACAGTAGCAC----T----AAGTGCTAG----TAATTTCCTGCCAAATCTCTCTTCCAGTTCCCTCAGTCTGCCTCTGTGTTCTGTGCCACAA-CCAAAGATTC-AGATTATCAATT-TTGCCCCCTT-GTAGCTCAGTTGAGGCCTCTTAACCAAC--AGCAGTGAA-CGCTGGGTGGCTTCGTT--AGTGGT-GCTCTG-TTGCAG-CTGTAGCTAAT-AGAG--------------------TTA-TTTCTCGCTGAAAT-CGGTG-ATGGT-AACGTTG--G--TCTGTTTTCCAA-TGCTAGCTTCTT-CAGTTTCC--TCTGAGTTCTTTTCTCCTGCAGTGTGAGATCACAACGGCATGCCTTATAGAAGAGTGCTCTTGCCTGCTCCATCCCGGCTGCTCCCAGGCCGTCCCTGGCTCCCCACCAGCAGC-------------------------CTGCCATAAATGCTCAGCTGTCTCTTCCC-CAAACAGCAGCATCGGCCCTGCATCTAGGACCCTTTCTGTATGTACCCTGAAAACCCAC-AGCG--CGGTGGTTAGGCTGGAGCAGCTCAGGCCAGCT-TGGGGCAAAAAG-CAGAGAAC-TGAGACCGTGTAGTGAGATTGG-TTCAGC---CAGTATCGGTGGAGGAGCTGCTGGGGACCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223726033 613 - 227556264 caggAAAAACAACGAAAAATAG--AACAATT-ACAGTAGCAC----T----AAGTGCTAG----TAATTTCCTGCCAAATCTCTCTTCCAGTTCCCTCAGTCTGCCTCTGTGTTCTGTGCCACAA-CCAAAGATTC-AGATTATCAATT-TTGCCCCCTT-GTAGCTCAGTTGAGGCCTCTTAACCAAC--AGCAGTGAA-CGCTGGGTGGCTTCGTT--AGTGGT-GCTGTG-TTGCAG-CTGTAGCTAAT-AGAG--------------------TTA-TTTCTCGCTGAAAT-CGGTG-ATGGT-AACGTTG--G--TCTGTTTTCCAA-TGCTAGCTTCTT-CAGTTTCC--TCTGAGTTCTTTTCTCCTGCAGTGTGAGATCACAACGGCATGCCTTATAGAAGAGTGCTCTTGCCTGCTCCATCCCGGCTGCTCCCAGGCCGTCCCTGGCTCCCCACCAGCAGC-------------------------CTGCCATAAATGCTCAGCTGTCTCTTCCC-CAAACAGCAGCATCGGCCCTGCATCTAGGACCCTTTCTGTATGTACCCTGAAAACCCAC-AGCG--CGGTGGTTGGGCTGGAGCAGCTCAGGCCAGCT-TGGGGCAAAAAG-CAGAGAAC-TGAGACCGTGTAGTGAGATTGG-TTCAGC---CGGTATTGGTGGAGGAGCTGCTGGGGGCCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16776167 612 - 220367699 caggaaaaaCAACgaaaaatag--aacaatt-acagTAGCAC----T----AAGTGCTAG----TAATTTCCTGCCAAATCTCTCTTCCAGTTCCCTCAGTCTGCCTCTGTGTTCTGTGCCACAA-CCAAAGATTC-AGATGATCAATT-TTGCCCCCTT-GTAGCTCAGTTGAGGCCTGTTAACCAAC--AGCAGTGAA-CGCTGGGTGGCTTTGTT--AGTGGT-GCTCTG-TTGCAG-CTGTAGCTAAT-AGAG--------------------TTA-TTTCTCGCTGAAAT-CGGTG-ATGGT-AACGTTG--G--TCTGTTTTCCAG-TGCTAGCTTCTT-CCGTTTCC--TCTGAGTTCTTTTCTCCTGCAGTGTGAGATCACAACGGCATGCCTTACAAAAGAGTGCTCTTGCCTGCTCCATCCCGGCTGCTCCCAGGCCGTCCCTGGCTCCCCACCAGCAGC-------------------------CTGCCATAAATGCTCAGCTGTCTCTTCCC-CAAACAGCAGCATCGGCCCTGCATTTAGGACCCTTTCTGTATGTACCCTGAAAACCCAC-AGCG--C-GTGGTTAGGCTGGAGCAGCTCAGGCCAGCT-TGGGGCAAAAAG-CAGAGAAC-TGAGACCGTGTAGTGAGATTGG-TTCAGC---CAGTATTGGTGGAGGAGCTGCTGGGGGCCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82573980 618 + 85787240 taggAAAAGCAACCAAAAATAG--AACAATT-ACAGTAGCAC----T----AAGTGCTAGAGACAAATTTCCTGCCAAATCTCTCTTCCAGTTCCCACAGTCTGCGTCTGTGTTCTGTGCCACAA-CCAAAGATTC-AGATTATCAATT-TTGTCCACTT-GTAGCTCAGTTGAGGCCTGTTAACCAAC--AGCAGTGAA-CGCTGGGTGGCTTCGTT--AGTGGT-GCTCTG-TTGCAG-CTGTAGCTAAT-AGAG--------------------TTATTTTCTCGCTGAAAT-CGGCG-ATGGT-AACATAG--G--TCTGTTTTCCAA-TGCTAGCTTCTT-CAGTTTCC--TCTGAGTTCTTTTCTCCTGCAGTGTGAGATCACAACGGCATGCCTTACAAAGGAGTGCTCTTGCCTGCTCCATCCCGGCTGCTCCCAGGCTGTCCCTGGCTCCCCACCAGCACC-------------------------CTGCCATAAACGCGCAGCTGTCCCTTCCC-TGACCAGCAGCATCGGCCCTGTATTTAGGACCCTTTCTGTATGTACCCTGAAAACCCAC-AGCG--CAGTGGTTAGGCTGGAGCAGCTCAGGCCAGCT-TGGGACAAAAGG-CAGAGAAC-TGAGACCGTGTAGTGACATTGG-GTCAGC---CAGTATTGGTGGAGGAGCTGCTGGGGGCCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14258116 598 - 49578535 --ggAAAAACAACCAAAAATAT--GACAATT-ACAGTAGCACTGAGT----GAGTGCTACAGACAAATTTCCTGCC-AGTCTCTCTTC-------CTCAGTCTGCCTCTGTGTTCTGTGCCACAA-CCAGTGATTC-CGAT-CTCAATT-GTGTCCACTT-GTAACACAGTTGAGGTCTGTTAAGCATC--ACCAGTGAA-CGTCGGGTGGATTCATT--AGTGGA-GCTCTG-TTCCAC-CTGTAGCTAAT-GAAG--------------------TCATTTTCTCGCTGAAA--CAGTG-AT-GT-ACAATTG--G--TCTGCTTTCCAG-GCCTGGCTGCTT-CCGTTTCC--ACTGAGTTCTTTCCTCCTGAAGTGTGAGATCACAATTGCATGCCTTACAAAAGAGTGCTCTTGCCTGCCCCATCCTGGGTGCGCCCA-GCTAACCCTGGCTCTCCACCAGCACC-------------------------CTGCCGTCAATGCTCAGCTGCCCCCTTCC--GAGCAGCAGCACCTGCCCTGCATTTAGGACCCTTTC----TGTACTTTGAAAACCCAC-AGCA--CAATGGTCAGGCTGGAGCGGCTTGGGCCAGCC-TGGGGCAAAAGG-CAGAGAAC-TGAGACCACGTAGTGAGTTTGG-TTCAGC---CAGTATTGGTGGAGGAGCTGCTGGGG----- i calJac3.chr19 C 0 C 0 s mm10.chr1 178829559 585 + 195471971 CAGATAAAGCTTCCAAAAGCAG--TGATATT--CGGGAGCAT----TTTGGAAGTGTTAAGCACAGATTTCCCTCAAAGCCACTCCCCC-GTTCCCTTGGT---TACCTGAGTCCCATGCCACAA-CCAACAATTC-AGAT-AGCAGTG-TTG-CCATGT-GGAGCTCAGGGGAATATTCTTTACTAAC--AATGACTAA--GCTGG-------------ACTGGAAACACTG-GGCCAA-CGGTAGCTAATCAGAGGGGTGGTTTTGCTTCATGCTTTCTTTCGTTGCTGAAAC-CATTG----GT-AAAATTAATG--CCCATTTCTTAACTGAGAGCTGGTTGTAGCTTC-------AGTTCTCTTGGTCCAGAGCGTGAGTTT---------------------GAGAGCTCCCGTGTCCCTCATGTGGCAGGCTCTTAGGCCACCACATGCTCATCACCAGGGCC-------------------------TCACAATGAAAGTTCA------CCACCCC-AGAGCAGC--CATCTGAGCTGCGTAT-GGATCCTTAC----TATACATTGCAAATCCAC-AGGT--ACAAGGTTACAGCATAGCAGCTATGACTAACTGTGGGTGAGAGGG-CAGACGAC-TGAGACCAAGCGGTGAGTTCAG-CTCAGCAGACAGAGTAGTTGG------TACTGATAGCCAG i mm10.chr1 I 154 I 2030 s canFam3.chr7 36405808 582 + 80974532 CCAGAGAAAC-ACCAGAAATAG--AACCATG-ATAGTAGCAC----T----TAGTGCTGGAGGCGAAATTCCTTTCGAAT-TCATTTCCTGTCCTCTCCGTC---------------TGCTACAG-CCAACTACTC-AGCT-AGAAATA-CTGTCCAGTT-GGAGC-----TGAGATCCTTT-ACCAGC--AACAATGAAATATTTGGTGGATTCTTT--AATGGA-GCACTG-CACCAG-CTGTCGCCAGTCAGAG--------------------ACTTTTTCTTGCTGAGAC-CTATG-ATGGTAAAAATCA--GACTCTGTTTCCCAG-CACTAGCTTCTT-AGGTTTGCAGATTCAGTTCTCTCATTCCGGACTGTGAGCCTGC--TGGCACACCAAGGGAAGAAGCGCTCTTGTCTGCTGTATCCTGA-TGCTGCTGGGT---------CTTACCCCCTGGGGTGGGGGGTGGGGGTGGAGGGTGAGGGTCATAATAAATGCTTCGCCACCCCCACCCGAGAGCAGCACCACCTGCACTGCCTTTAAGACCCCACATGGATG-----TGAGAATGTGTGGGCA--CAGCCCTTAGGCTGGAG-----------------------------CATAGGAT-GGAGACCATGTGGTGAGCTTAG-TTCAG----CTGTAGTCATGGAGCAGCTGC-GGGGGCCAG i canFam3.chr7 C 0 C 0 a score=532069.000000 s hg38.chr1_KI270759v1_alt 244975 193 + 425601 GCACATGCTGGAAAAGTGGCGTGTTAT-GTCCCGGGGTCTGAAGCAAGAATGGGATCAGGCAGTGTGGAACCAATTTGTAAACTCCTCACTCACTGACTGTCATTAGTAACTAAGTTGCTAC---AAGCTC-TTT-------------------------------------TTTTGTGAGCCTCAAAACAGGAAGCCCAGAAGAGTTTACAACAATGGAAACTCTCAGGTTTCT- s panTro4.chr1 225000469 192 + 228333871 GCACATGCTGGAAAAGTGGCGTGT-AT-GTCCTGGGGTCTGAAGCAAGAATGGGATCAGGCAGTGTGGAACCAATTTGTAAACTCCTCACTCACTGACTGTCATTAGTAACTAAGTTGCTAC---AAGCTC-TTT-------------------------------------TTTTGTGAGCTTCAAAGCAGGAAGCCCAGAAGAGTTTACAGCAATGGAAACTCTCAGGTTTCT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226367117 192 - 229942017 GCACATGCTGGAAAAGTGGCGTGT-ATGGTCCTGCGGTCTGAAGCAAGAATGGGATCAGGCAGTGTGGAACCAATTTGTAAACTCCACACACACTGACTGTCATTAGTAACTAAGTTGCTAC---AAGCTCTTTT-------------------------------------TTTTGTGAGCCTCAAAACAGGAAGCCCAGAAGAGTTTATAAC--TGGAAACTTTCAGGTTTTT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140252294 192 - 143122389 GCGCATGCTGGAAAAGTGGCGTGT-GT-GTCCTGGGGTCTGAAGCGAGAATGGGATCAGGCAGCGTGGAACCAATCTGTAAACTCCTCACACACTGACTGTCATTAGTAACTAACTTGCTAC---AAGCTC-TTT-------------------------------------TTTTGTGAGCCTCAAAACAGGAAGCCCAGAAGAGTTTACAACAGTGGAAATTTTCAGGTTTTT- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16963359 205 - 229590362 GCACACACCGGAAAAGTGGTGTGT-AT-GTCCTGGAGTCTGAAGCAAGAATGGCATCAGGCAGTGTGGAACCAATTTGTAAACTCCTCACACA--GACTGTCATGAGTAACTAAGTTGCTAC---AAGCTC-TTT----------------------tgtgtgtgtgtgtgtgtgtgtgAACTTCAAAGCAGGAAGCCCCGAAGAGTTTACAACAATGGAAACTCTCAGGTTTTC- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223726646 205 - 227556264 GCACACGCCGGAAAAGTGGTGTGT-AT-GTCCTGGAGTCTGAAGCAAGAATGGCATCAGGCAGTGTGGAACCAATTTGTAAACTCCTCACACA--GACTGTCATGAGTAACTAAGTTGCTAC---AAGCTC-TTT----------------------tgtgtgtgtgtgtgtgtgtgtgAACTTCAAAGCAGGAAGCCCCGAAGAGTTTACAACAATGGAAACTCTCAGGTTTTC- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16776779 227 - 220367699 GCACACGCCGGAAAAGTGGTGTGT-AT-GTCCTGGGGTCTGAAGCAAGAATGGCATCAGGCAGTGTGGAACCAATTTGTAAACTCCTCACACA--GACTGTCATGAGTAACTAAGTTGCTAC---Aagctc-ttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacttcAAAGCAGGAAGCCCCGAAGAGTTTACAACAATGGAAACTCTCAGGTTTTT- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82574598 205 + 85787240 GCACACGCCGGAAAAGTGGTGTGT-AT-GTCCTGGGGTCTGAAGCAAGAATGGGATCAGGCAGTGTGGAACCAATTTGTAAACTCCTCACACACTGACTGTCATTAGTAACTAAGTTGCTAC---AAGCTC-TTT------------------------TTTTTTTGTGTGTGTGTGTGAGCTTCAAAGCAGGAAGTCCAGAAGAGTTTACAACAATGGAAACTCTCAGGTTTTT- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14258714 174 - 49578535 -------------AAGTGGCGTGT-GT-GGCCTGGGGTCTGGAGCAAGAATGGGATCAGGCAGTGTGGAAGCAGTTTGTAAACTCATAACACACCAACTGTCATTAGTAAATAAGTTGCTAC---AAGCTA-TTT-------------------------------------TTTTGTCAGCCTCAAAAC----AGCCCAGAAGAGTTTA-AATGATGGAAACTCTCAGGttttt- i calJac3.chr19 C 0 I 302 s canFam3.chr7 36406390 168 + 80974532 ----GCACTAGGAAAGACACAGGT-GT-GTTCCAGGGCC--AGGTGAGAACAGGGTCAGGCAGTATGGAACCGTTCTGTGACCTGCAGACACACCTACAGTCATCA---------TCACTACACAAAGCTC-TTT-------------------------------------CTCTCTGAGCCTCGACACGGGAAGCCTT-------------CTATGGAACCCTATGACTTTTCT i canFam3.chr7 C 0 C 0 e mm10.chr1 178830144 2030 + 195471971 I a score=433213.000000 s hg38.chr1_KI270759v1_alt 245168 134 + 425601 ACAGGAAAAAGGAGAATGTTGTTTTCCCCAAAGGTTATTTCCTTCTGCAGCCTGGCCATGTGCCCCTTTCCCTC--------AAGTTTGGGAAGCAGGACAAAGGGCCCTGGGGAATGCCTTAGCCCAT-GATGAGCTGAGGG s panTro4.chr1 225000661 134 + 228333871 ACAGGAAAAAGGAGAATGTTGTTTTCCCCAAAGGTTATTTCCTTCTGCAGCCTGGCCATGTGCCCCTTTCCCTC--------AAGTTTGGGAAGCAGGACAAAGGGCCCTGGGGAATGCCTTAGCCCAT-GATGAGCTGAGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226367309 134 - 229942017 ACAGGAAAAAGGAGAATCTTGTTTTCCCCAAAGGTTATTTCCTTCCGCAGCCTGGCCATGTGTCCCTCTCCCTC--------AAGTTTGGGAAGCAGGACAAAGGGCCCTGGGGAATGCCTTAGCCCAT-GATGAGCTGAGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140252486 133 - 143122389 ACAGGAAAAAGGAGAATCTTGTTTTCCCCAAAGATTATCACCTTCCGCAGCCTGGCCATGTGCCCCTCTCCCTC--------AAGTTTGGGAAGCAGGACAAAGGGCCTT-GGGAATGCCTCAGCCCAC-GATGAGCTGAGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16963564 133 - 229590362 ACAGGAAAAGGGAGAATCTTGCTTTCCCCACAGGTTATTTGCTTTCACAGCCTGGCCATGTGCCCCTTTCCCTC--------AAGTTTGAGAAGCAGGACAAAGGGCCCT-GGGAAGGCCTTAGCCCGT-GAAGAGCTGGGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223726851 133 - 227556264 ACAGGAAGAGGGAGAATCTTGCTTTCCCCACAGGTTATTTGCTTTCACAGCCTGGCCATGTGCCCCTCTCCCTC--------AAGTTTGAGAAGCAGGACAAAGGGCCCT-GGGAAGGCCTTAGCCCGT-GAAGAGCTGGGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16777006 133 - 220367699 ACAGGAAAAAGGAGAATCTTGCTTTCCCCACAGGTTATTTGCTTTCACAGCCTGGCCATGTGCCCCTCTCCCTC--------AAGTTTGGGAAGCAGGACAAAGGGCCCT-GGGAAGGTCTTAGCCCGT-GAAGAGCTGAGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82574803 133 + 85787240 ACAGGAAAAAGGAGAATCTTGCTTTCCCCAAAGGTTATTTGCTTTCACAGCCTGGCCGTGTGCCCCTCTCCCTC--------AAGTTTGGGAAGCAGGACAAAGGGCCCT-GGGAAGGCCTTAGCCCGT-GAAGAGCTGAGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14259190 133 - 49578535 ACAGAAAAAAGGAGAATCTTGTTTTCCCCAAAGGTTATTTCCTTCAGCAGCGTGACCACATGCCCCTCTCCCTC--------AAGTTTGGGAAGCAAGACAAAGGGCCTT-GGGAATGCCTTAGCTCAT-GATGAGCTGAGGG i calJac3.chr19 I 302 C 0 s canFam3.chr7 36406558 141 + 80974532 GCAGGGAAAAAGGGACTCTTCCCT--CCCAATGGTTATTTCCTTTAGCAGCTTGGCCAGATGCCCCCCACCACCCCGCTGCTGATTTTGGGAAAGAAGAGTAACAGCCTTTGGGAATGCTTTACCCCATGGGTGAACTGAGAG i canFam3.chr7 C 0 I 1273 e mm10.chr1 178830144 2030 + 195471971 I a score=1667306.000000 s hg38.chr1_KI270759v1_alt 245302 571 + 425601 ACAGTCATTTTTGTCCCGTCATCATGCATTTGATTTGCTCCTTGTTTTA--TGTAAATATATAAttttagacagcgtcttccttcgtcagccaggctggagtgcagtggccctgacacggttcactgcagcctcaacttcctgagctcaggggatcctcccacctcagcctctcaggtagctgggacca----cattagccaccatgccctgctaa-ttttttgtattttttgtagagacaggatttctccatgttggcca-ggctggtctcaaacacttgggctcaagcgatccacccgccttgacctcccaaagtgttggg-attacaaacatga-gccactgcgcatggccTGTTTTAAACA-TTTTAAGAAAATATTTTATCATATTTGCAC-AAGAAGATTTTCAGTG-AAGGACAATGTTTTGAAAATCCAATCAGTAAGATACTCGCTGGGAGGTATTTTTATAGAAATCCATGGAAAGCTAATCATAGGAAATCGGAAAAACAGAGAGCAGGGTTTGTAGCTTGGCCTTTCCCCTACCTTGTTCCGCATTCTATAAAAAGTGAAAAAGTAGCAAAG s panTro4.chr1 225000795 571 + 228333871 ACAGTCATTTTTGTCCCGTCATCATGCATTTGATTTGCTCCTTGTTTTA--TGTAAATATATAAttttagacagcgtcttacttcgtcacccaggctggagtgcagtggccctgacacggctcactgcagcctcaacttcctgagctcaggggatcctcccacctcagcctctccggtagctgggacca----cattagccaccatgccctgctaa-ttttttgtattttttgtagagacaggatttctccatgttggcca-ggctggtctcaaacacttgggctcaagcgatccacccgccttgacctcccaaagtgttggg-attacaaacatga-gccactgcgcatggccTGTTTTAAACA-TTTTAAGAAAATATTTTATCATATTTGCAC-AAGAAGATTTTCAGTG-AAGGACAATGTTTTGAAAATCCAATCAGTAAGATACTCGCTGGGAGGTATTTTTATAGAAATCCATGGAAAGCTAATCATAGGAAATCGGAAAAACAGAGAGCAGGGTTTGTAGCTTGGCCTTTCCCCTACCTTGTTCCGCATTCTATAAAAAGTGAAAAAGTAGCAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226367443 573 - 229942017 ACAGTCATTTTTGTCCCATCATCATGCATTTGATCTGCTCCTTGTTTTA--CGTAAATATATAAttttagacagcgtcttacttcgtcacccaggctggagtgcagtggccctgacacggctcactgcagcctcaacttcctgagctcaggggatcctcccacttcagcctctcaggtagctaggacca----cattagccaccatgccctgctaa-ttttttgtattttttgtagagacaggatttctccatgttggccanggctagtctcaaacacttgggctcaagcgatccgcctgccttgacctcccaaagtgttgggaattacaaacatgaggccactgcacATGGGCTGTTTTAAACATTTTTAAGAAAATATTTTATCATATTTGCACAAAGAAGATGTTCAGTGAAAGGACAATGTTTTGAAAATCCAATT----GGATATTCGCTGGGAGGTATTTTTATAGAAATCCATGGAAAGCTAATCATAGGAAATCGGAAAAACAGAGAGCAGGGTTTGTAGCTCAGCCTTTCCCCTACCTTGTTCCACATTCTATAAAAAGTGGAAAAGTGGCAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140252619 572 - 143122389 ACGGTCATTTTTGTCCCATCGTCATGCATTTGATCTGCTCCTTGTTTTA--TGTGAATATATAAttttagacagcgtcttacttcgtcacccaggctggagtgcagtggccctgtcacggctcactgcagcctcaacttcctgaacttggggaatgctcccacctcaacctctcaggtagctgggacca----cattagccgccatgccctgctaatttttttgtattttttgtagagacaggatttctccgtgttggcca-ggctggtctcaaacacttgggctcaagcgatccacccgccttcacctcccaaactgttggg-attacaaacatga-gccactgcacgtggccTGTTTTAAACA-TTTTAAGAAAATATTTTATCATATTTGCAC-AAGAAGATTTTCAGTG-AAGGACAATGTTTTGAAAATCCAATCAGTAAGATACCCGCTGGGAGGTATTTTTATAGAAACCCATGGAAAGCTAATCGTAGGAAATCGGAAAAACAGAGAGCAGGGTTTGTAGCTTGGCCCTTCCGCTACCTTGTTCCACATTCTATAAAAAGTGAAAAAGTAGCAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16963697 575 - 229590362 ACAGTCATTTTTGTCCCGTCATCATGCATTTGATCTGCTCCTTGTTTTA--TGTATATATATAAttttagacagggtctcacttcgtcacccaggctggagtgcagtggccctgacacagttcactgcagcctcaacttcctgagctcaggggatcctcccacctcagcctctcaggtagctgggcccacaggcacacgccaccatgccctgctaa-atttttgtattttttgtagagacaggatttcaccatgttgacca-ggccggcctcaaacacttggactcaagcgctccacccgccttgacctcccaaagcgttggg-attacaaacatga-gtcactgcacatggccTGTTTTAAATA-TTTTAAGAACATATTTTATCGTATTTGCAC-AAGAAGATTTTCTATG-AAGGACAATGTTTTGAAAATCCAATCAGTAAGATACTTGCTGGAAGGTATTTTTATAGAAACCCATGAAAAGCTAGTCATTGGAAATCAGAAAAACAGAGAGCAGGGTTTGTAGCTCGGCCTTTCCTCTACCTTGTTCCCCATTCTATAAAAAGTGAAAAAGTAGCAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223726984 575 - 227556264 ACAGTCATTTTTGTCCCGTCATCATGCATTTGATCTGCTCCTTGTTTTA--TGTATATATATAAttttagacagggtctcacttcgtcacccaggctggagtgcagtggccctgacacagctcactgcagcctcaacttcctgagctcaggggatcctcccacctcagcctctcaggtagctgggcccacaggcacacgccaccatgccctgctaa-atttttgtattttttgtagagacaggatttcaccatgttggcca-ggccggtctcaaacacttggactcaagcgatccacccgccttgacctcccaaagcgttggg-attacaaacatga-gtcactgcacatggccTGTTTTAAATA-TTTTAAGAACATATTTTATCGTATTTGCAC-AAGAAGATTTTCTATG-AAGGACAATGTTTTGAAAATCCAATCAGTAAGATACTTGCTGGAAGGTATTTTTATAGAAACCCATGAAAAGCTAGTCATTGGAAATCAGAAAAACAGAGAGCAGGGTTTGTAGCTCGGCCTTTCCTCTACCTTGTTCCCCATTCTATAAAAAGTGAAAAAGTAGCAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16777139 577 - 220367699 ACAGTCATTTTTGTCCCGTTATCATGCATTTGATCTGCTccttgttttatgtgtatatatataattttagacagggtctgacttcgtcacccaggctggagtgcagtggccctgacacggctcactgcagcctcaacttcctgagctcagggggtcctcccacctcagcctctcaggtagctgggcccacaggcacacgccaccatgccctgctaa-atttttgtattttttgtagagacaggatttcaccatgttggcca-ggccggtctcaaacacttggactcaagccatccacccaccttgacctcccaaagcgttggg-attacaaacatga-gtcactgcacatggcctgttttaaata-ttttaagaacataTTTTATCGTATTTGCAC-AAGAAGATTTTCTGTG-AAGGACAATGTTTTGAAAATCCAATCAGTAAGATACTTGCTGGAAGGTATTTTTATAGAAACTCATGAAAAGCTAGTCActggaaatcagaaaaacagagagcagGGTTTGTAGCTCGGCCTTTCCCCTACCTTGTTCCCCAttctataaaaagtgaaaaagtagCAAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82574936 575 + 85787240 ACAGTCATTTTTGTCCCGTCATCATGCATTTGATCTGCTCCTTGTTTTA--TGTGTATATGCAAttttagacagggtcttacttcgtcacccaggctggagtgcagtggccctgacacggctcactgcagcctcaacttcctgagctcaggggatcctcccacctcagcctctcaggtagctgggaccacaggcacacggcaccatgccctgctac-atttttgtattttttgtagagacaggatttcaccatgttggcca-ggccggtctcaaacacttgggctcaagcgatccacccaccttgacctcccaaagcattggg-attacaaacatga-gtcactgcacatggccTGTTTTAAATA-TTTTAAGAAAATATTTTATCGTATTTGCAC-AAGAAGATTTTCTCTG-AAGGACAATGTTTTGAAAATCCAATCAGTAAGATACTTGCTGGAAGGTATTTTTATAGAAACTCATGAAAAGCTAATCATTGGAAATCAGAAAAACAGAGAGCAGGGTTTGTAGCTCGGCCTTTCCCCTACCTTGTTCCCCATTCTATAAAAAGTGAAAAAGTAGCAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14259323 564 - 49578535 ACAGTCATTTTTGACTCGTCGTCATGCATTTGATCTGCTCCTCATTTTA--TGGATACGTATAAttttggacagggtcttacttcgtcacccaggctggagtgcagtggccccatcacagctcactgcagcctcaacttcctgagctcaggtgatcctcccacctcagcctctcaggtagctgagaccacaggcacacaccaccctgccctgctaa-t--------ttttttgtagatacagggtttcaccatgcaggcca-gggtggtctcaaactcctgggctcaagtgatctacctaccttggccttctaaagtgctgga-attacaaacatga-gccatggcacatggccCATTTTACACA-TTTTAAGAAAATATTTTATCATACTTGTAC-AAGAAGATTTTCAGTG-AAGGACAAAGTTTTGAAAATCCAATCAGTAAGATACTCACTGGGAGGTATTTTTATAGAAACCCGTG-AAAGCTAATCATAGGAAACTGGAAAAACAG-GAGCAGGGTTTGCAGTTCGGCCTTTCCCC-ACCCTGTTCCCCATTCTATAAAGAGTGAAAAGGTAGCACAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178830144 2030 + 195471971 I e canFam3.chr7 36406699 1273 + 80974532 I a score=2420359.000000 s hg38.chr1_KI270759v1_alt 245873 1105 + 425601 TAGCACCCTACAGGGGGCTCAGAGGTGCTGGAGGACTAATAACGCACCATTTGCATGTCCACGCCACGCGACCCTGCAGTCACGCTCTGTTACAAGTACAGATGGTGAAAGTGTGGCCAGGAATGGATGCCGGAAGCCCAGAAGGAAGTTGGCTCTTGTCTGGAGGCTCCCAGGGTGGATCTGCACAGccttccctt-ggctgattcctgtccatcctgtggatatcagtg-aaatgccaattcc-ttggggaggctttccctgccaacc--tccccaac--cccaggttatcca--ggctgggtg-ccccctcgtgtgc-ttccgtaa--ccccccaaagtttct-cctcattgcattcatcactcttt--agatgactgatctgcgtaatt--ccatgttca-gtgggtctcctt-aacgaatgtaagctccatgagggcagggccatgtccttcttgttcccctttgaatccagagcactacacggtgcccaactgtcataggtgtcataggtgctcagtaaatactAGGtgtattagccagagttctccagagaaacagaaccagcagggtgtgt--gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagtggggg-tgggggattgactgattttcaggactggactcctgtgactgtggaggttggcgggcaggctggagacgcagggaagaggtgcagctggagtccaaaggcgggcagccgacaagcagaattccttcttgctcagggaaagtcagctttggttctattcaggccttcaactggttggatggagcccac-cacattatggaaggtcgtctgatttactcaaactcagctgatttaaat-gttaatctcatct------aaaaaaa--tacctccacagaaatatgaccaaatatctgaataccggggc---ccagc-caaattgacacatTA-CCATCGCACTAGGGGAATGAATGGAATGATGACACTGGTTTCCATTCTGTTGCGatgatccttcccatccgtataaggcctgacaatttccatgcccttgcacctatgtcatcttcctggattt----ttttttttttttt--------gagacagtctcactctgtcgcccaggctggagtgcagtgggg s panTro4.chr1 225001366 1107 + 228333871 TAGCACCCTACAGGGGGCTCAGAGGTGCTGGAGGACAAATAACGCACCATTTGCATGTCCACGCCACGCGACCCTGCAGTCACGCTCTGTTACAAGTACAGATGGTGAAAGTGTGGCCAGGAATGGATGCCGGAAGCCCAGAAGGAAGTTGGCTCTTGTCTGGAGGCTCCCAGGGTGGATCTGCACAGccttccctt-ggctgattcctgtccatcctgtggatatcagtg-aaatgccaattcc-ttggggaggctttccctgccaacc--tccccaac--cccaggttatcca--ggctgggtg-ccccctcgtgtgc-ttccgtaa--ccccccaaagtttct-cctcattgcattcatcactcttt--agatgactgatctgcataatt--ccatgttca-gtgggtctcctt-atcgaatgtaagctccatgagggcagggccatgtccttcttgttcctctttgaatccagagcactacacagtgcccaactgtcataggtg---------ctcagtaaatactAGGtgtattagccagagttctccagagaaacagaaccagcaggatgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagtggggg-tgggggattgactgattttcaggactggactcctgtgactgtggaggttggcgggcaggctggagacgcagggaagaggtgcagctggagtccaaaggcgggcagccgacaagcagaattccttcttgctcagggaaagtcagctttggttctattcaggccttcaactggttggatggagcccac-cacattatggaaggtcgtctgatttactcaaactcagctgatttaaat-gttaatctcatct------aaaaaaa-atacctccacagaaatatgaccaaatatctgaatactggggc---ccagc-caaattgacacatTA-CCATCGCACTAGGGGAATGAATGGAATGATGACACTGGTTTCCATTCTGTTGtgatgatccttcccatccgtataaggcctgacaatttccatgcccttgcacctatgtcatcttcctggattt----tttttttttttttttttttttgagacagtctcactctgtcgcccaggctggagtgcagtgggg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226368016 1121 - 229942017 TAGCACCCTACAGGGGGCTCAGAGGTGCTGGAGGACTAATAACGCAGCATTTGCATGTCCGTGCCATGCGACCCTGCCGTCACGCTCTGTTACAAGTACAGATGGTGAAAGTGTGGCCAGGAATGGATGCCGGAAGCCCAGAAGGAAGCTGGCTCTTGTCTGGAGGCTCCCAGGGTGGATCTGCTCAGccttcacttgggctgattcctgtccaacctgtggatatcggtgaaaatgccaattcctttagggaggctttccctgccaaccctcccccaacaaccaggtttatccaagggctgggtgcccccctcgtgtgctttccgtaaaccccccaaaagtttctccctcattgcattcatcacccctttagaatgactgatctgcataatttcccatgttcaggtgggtctccttaattgaatgtaagctccatgagggcagggccatgtccttcttgttcccctttgaatccggagcactacacggtgcccaactgtcataggtg---------ctcagtaaatACTAGGtgtattagccagagttctccagagaaacagaaccagcagggt------gtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagtgggggttgggggattgactgattttcaggacttggctcctgtgattgtggaggttggcgggcaggctggagacgcagggaagaggtgcagctggagtccaaaggcgggcagccgacaagcagaattccttcttgctcagggaaagtgagctttggttctattcaggccttcagctggttggatggagcccac-cacattatggaaagtcatctgatttactcaaactcagctgatttaaatagttaatctcatcc------aaaaaaaaatacctccacagaaatatgaccaaatatctgaataccagggctttccagcgcaaactgacacatTA-CCATTGCACTAGGGGAATGAATGGAATGATGACACTGGTTTCCCTTCTGTTGCGatgatccttcccatctgtataaggcctgacagtttccatgcccttgcacctatgtcatcttcctggattt----ttttttttttttt-------tgagactgtctcactctgttgcccaggctggagtgcagtgggg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140253191 1094 - 143122389 TAGCACCCTACAGGGGGCTCAGAGGTGCTGGAGGACTAATAACGCACCATTCGCATGTCCACGCCACGCGACCCTGCAGTCACGCTCTGTTACAAGTACAGATGGTGAAAGTGTGGCCAGGAATGGAGGCCGGAAGCCCAGAAGGAAGCTGGCTCTTGTCTGGACGCTCCCAGGGCGGATCTGCTCAGccttcgctt-ggctgattcctgtccatcctgtgaataccagtg-aaatgccaattcc-ttggggaggctttccctgccaacc--tcccccac--cccaggttatcca--ggtcgggtg-ccccctcatgtgc-ttccgtaa--ccccccaaagtttct-cctcattgcattcatcacccttt--agatgactgatctgtgtaatt--ccatgttca-gtgggtctcctt-attgaatgtaagctccatgagggcagggccatgtccctcttgttcacctttgaatccagagcactacacggtgctcaactgtcataggtg---------ctcagtaaaCACTAGGTAGatgagccagagttctccagagacacagaaccagcaggat--------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagagcggggg-tgggggattgactgatttgcaggacttggctcgtgtgattgtggaggttggcaggtaggctggagacgcagggaagagctgcagctggaatccaaaggcagccagtcgaccagcagaattccctcttgctcagggaaagtcagcttttcttctattcaggccttcaactggttggatgaagcccac-cacattatggaaggtcatctgatttactcaaactcagctgatttaaat-gttaatctcatct------aaaaaaa-atacctccacagaaatatgaccaaaagtctgagtaccagggc---ccagg-caaactggcacattacccatcgcaCTAGGGGAATGAATGGAATGATGACGCTGGTTTCCATTCTGTTGCGATGATCCTTCACATCCGTATAAGGCCTGACAGTTTCCATGCCCTTTCACCCATGTCATCTTCCTGGAttt----tttttttttttttttttttttgagacagtttcactctgtcacccaggctggagtacagtgggg i nomLeu3.chr5 C 0 I 762 s rheMac3.chr1 16964272 1071 - 229590362 TAGCACCCTACAGGGTGTTCAGATGTGCTGGAGGACTAATAACGCACCATTCGCATGTCCACGCCATGTGACCCTGCAGTCACGCTCTGTTACAAGAACAGATGGTG-AAATGTGGCCAGGAATGGATCCCGGAAGCCCAGAAGGAAGCTGGCTCTTGTCTGGAGGCTCCCAGGGTGGATCTGCTCGGCctttgctt-ggctgattcctgtccatcctgtggatatcagtg-aaacgccaactcc-tcggggaggcgttccctgccagcc--tcccccac--cccaggttatcca--ggttgggtg-ccacctcatgtgc-ttccgtaa--cccctcacagtttct-ccttattgcattcatcacccttt--agatgactgatctgcataatt--ccatgttcc-gtgggtctacat-attgaatgtaagctccatgagggcagggccgtgtccctctcattcccctttgaatccagagcactacacagtgcccaactggcataggtg---------ctcagtaaacactagttgtattagccagagttctccagagaaacagaaccagcaggat------------------------------------gtgtgtgtgtggacagtagggg-tgggagattgactgattttcaggacttagctcctgtgcttgtggaagttggcgggcaggctggagacgcagggaagagctgcagctggagtccaaaggtgggcagccgaccagcagaattccctcctgctcagggatagtcagctttggttctattcaggccttcaactggttggatgaagcccacccacgttatggaaggtggtctgatttactcaaactcagctgatttaaat-gttaatctcatctcatct-aaaaaaa-atacctccacagaaatatgatcacatatctgagtactggggc---ccagc-caaatggacgcattaaccatcgcactaggtgaatgaatGGAATGATGACATTGGTTTCCAATCTGtaacgatgatccttcacatctgtataaggcctcacagtttccatgccctttcacctatatcatcttcctggaatt----ttttttcgttttt------tttagacagtctcactctgttgcccaggctggagtgcagtgggg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223727559 1072 - 227556264 TAGCACCCTACAGGGTGTTCAGAGGTGCTGGAGGACTAATAACGCACCATTCGCATGTCCACGCCATGTGACCCTGCAGTCACGCTCTGTTACAAGAACAGATGGTG-AAATGTGGCCAGGAATGGATCCCGGAAGCCCAGAAGGAAGCTGGCTCTTGTCTGGAGGCTCCCAGGGTGGATCTGCTCGGCctttgctt-ggctgattcctgtccatcctgtggatatcagtg-aaacgccaactcc-tcggggaggcgttccctgccagcc--tcccccac--cccaggttatcca--ggttgggtg-ccacctcatgtgc-ttccgtaa--cccctcacagtttct-ccttattgcattcatcacccttt--agatgactgatctgcataatt--ccatgttcc-gtgggtctccat-attgaatgtaagctccatgagggcagggccgtgtccctctcattcccctttgaatccagagcactacacagtgcccaactggcataggtg---------ctcagtaaacactagttgtattaaccagagttctccagagaaacagaaccagcaggat------------------------------------gtgtgtgtgtggacagtagggg-tgggagattgactgattttcaggacttagctcctgtgcttgtggaagttggcgggcaggctggagacgcagggaagagctgcagctggagtccaaaggtgggcagccgaccagcagaattccctcctgctcagggatagtcagctttggttctattcaggccttcaactggttggatgaagcccacccacgttatggaaggtggtctgatttactcaaactcagctgatttaaat-gttaatctcatctcatctaaaaaaaa-atacctccacagaaatatgatcacatatctgagtactggggc---ccagc-caaatggacgcattaaccatcgcactaggtgaatgaatGGAATGATGACATTGGTTTCCAATCTGtaacgatgatccttcacatctgtataaggcctcacagtttccatgccctttcacctatatcatcttcctggaatt----ttttttcgttttt------tttagacagtctcactctgttgcccaggctggagtgcagtgggg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16777716 1075 - 220367699 TAGCACCCTACAGGGTGTTCAGAGGTGCTGGAGGACTAATAACGCACCATTCGCATGTCCACGCCATGTGACCCTGCAGTCACGCTCTGTTGCAAGAACAGATGGTGAAAATGTGGCCAGGAATGGATGCTGGAAGCCCAGAAGGAAGCTGGCTCTTGTCTGGAGGCTCCCAGGGTGGATCTGCTCGGCCTTTGCTT-GGCTGATTCCTGTCCATCCTGTGGATATCAGTG-AAATGCCAATTCC-TCGGGGAGGCGTTCCCTGCCAGCC--TCCCCCAC--CCCTGGTTATCCA--GGTTGGGTG-CCGCCTCGTGTGC-TTCTGTAA--CCCCCCAAAGTTTCT-CCTCATTGCATTCATCACCCTTT--AGATGACTGATCTGCATAATT--CCATGTTCC-ATGGGTCTCCAT-AttgaatgtaagctccatgagggcagggccgTGTCCCTCTCATTCCCCTTTGAATCCAGAGCACTACACAGTGCCCAGCTGgcataggtg---------ctcagtaaacacaAGGTGTATTAgccagagttctccagagaaacagaaccagcaggat------------------------------------gtgtgtgtgtggacagt-gGGG-TGGGGGATTGACTGATTTTCAGGACTTGGCTCCTGTGCTTGTGGAAGTTGGCGGGCAGGCTGGAGACGCAGGGAAGAGCTGCAGCTGGAGTCCAAAGGTGGGCAGCCGACCAGCAGAATTCCCTCCTGCTCAGGGATAGTCAGCTTtggttctattcaggccttcaactggtTGGATGAAGCCCACTCACGTTATGGAAGGTGGTCTGATTTACTCAAACTCagctgatttaaat-gttaatctcatctcatct-aaaaaaa-ataccTCCACAGAAATATGATCACATATCTGAGTACCGGGGC---CCAGC-CAAATGGACGCATTAACCATTGCACTAGGTGAATGAATGGAATGATGACATTGGTTTCCAATCTGTTACGATGATCCTTCACATCTGTATAAGGCCTCACAGTTTCCATGCCCTTTCACCTATATCATCTTCctggaatttgtgtgtgtgtgtgttt------tttagacagtctcactctgtcgcccaggctggagtgcagtgggg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82575511 1070 + 85787240 TAGCACCCTACAGGGGGCTCACAGGTGCTGGAGGACTAATAACGCACCATTCGCATGTCCATGCCATGTGACCCTGCAGTCACGCTCTGTTACAAGAACAGATGGTGAAAGTGTGGCCAGGAATGGATGCTGGAAGCCCAGAAGGAAGCTGGCTCTTGTCTGGAGGCTCCCAGGGTGGATCTGCTCAGCctttgctt-agctgattcctgtccatcctgtggatatcagtg-aaatgccaattcc-tcggggaggcattccctgccagcc--tcccccac--ccccggttatcca--ggttgggtg-ccgcctcgtgtgc-ttctgtaa--ccccccaaagtttct-cctcattgcattcatcacccttt--agatgactgatctgcataatt--ccatgttcc-gtgggtctccat-a-tgaatgtaagctccatgagggcagggccatctccctctcgttcccctttgaatccagagcactacacagtgcccagctggcataggtg---------ctcagtaaacacaaggtgtattagccagagttctccagagaaacagaaccagcaggat------------------------------------gtgtgtgtgtggacagt-gggg-tgggggactgactgattttcaggacttggctcctgtgcttgtggaggttggcgggcaggctggagacgcagggaagagctgcagctggagtccaaaggcgggcagccgaccagcagaattccctcctgctcagggatagtcagctttgattctattcaggccttcaactggttggatgaagcccacccacgttatggaaggtggtctgatttactcaaactcagctgatttaaat-gttaatctcatctcatct-aaaaaaa-atacctccacagaaatatgatcacctatctgagtaccggggc---ccagc-caaatggacgcattaaccatcgcactaggtgaatggatggaATGATGACATTGGTTTCCAATCTGTTatgatgatccttcacatctgtataaggcctcacagtttccatgccttttcacctgtatcatcttcctggaatt----ttgttttgttttt------tttagacagtctcactctgtcgcccaggctggagtgcagtgggg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178830144 2030 + 195471971 I e canFam3.chr7 36406699 1273 + 80974532 I e calJac3.chr19 14259887 0 - 49578535 C a score=3332979.000000 s hg38.chr1_KI270759v1_alt 246978 1443 + 425601 cgatcttggctccctgcaacctctgcctgctgggttcaagcgattctcctgc-------------g-tagctgggattacaggcacatgccaccactcccggctaatttttgta-ttttttatggagatgg---ggttttaccacgttggccaggctagtctcaaactcctgg---------cctcaagtgatcc---acctgccttggcctcccaaagtgttgggattccgggtgtgagccaccgcacacagcctccctggattcttaatacagccctgagaggtaggcagtggggcagtgcggggaggcaggggcttgtt-agatgctgcccatagatgagaacactgagattcagagagggcaaaata-attcctagaggtgacaccgctTTTCAGAGTGGATGGGGTGACACCATATGTTTGTTTCTACTGTTCTTTTCCAaatcatacaacatatg-agccat-tcatcttgtgccaagcactgttcagaaggctccatcctcatgacacccctgtgggaagcttccaccatcaccactcctcttttacactggaggaa-gctggaccggatctaaggaatctg-cccagcatcacatgcctggtctgtggtggagctggcctatgaacgcc-aactctggaacctgtcctctggatggctgcatgagactgtCTCTCTATA-GGCACCTTATGTGGTCATTTTGGTTTCAGAAGAGGTACAGTAAGCAAATGTTCCTGGCTGGCGTGC-TGCAGCTGCCTTggcggggtggcaggcagggggctgtggcggaggctgaggcT-GGTCGT-CCTCCTCTGCCGCTGACAGT-CCCAAGCT-CTCTTCCCTCATCATC-TCAGATAG-CTTTGTGGTTGTCACTGTGTTGTTTTATATATGAATATTTTTTATGGATTTTTATATATGGATTGCCGTGTGACTTATGTTTCCCTGCCCTAAGCACACCGATGAAAGTACATTAATACTCAAAATGACTTTGAAAAGACCAAAAGAAACAAA-AAAAGTCCTAAATTCCGTGGGAGGAAAAACCATGATCCTTTAGCCCTACTCCGGAATAGTAAGAACTGAGAGCCAAAGCCAAGGCGGGGACAGCACCCTGGGAGC-TGATGGGCTGGTTAGTCCCATCCCAGATTATATGGAGGCACCCGGG-TGATTCCA--TTTCATTGAGAATTCTGTGTCTA-GAGCA-CCAGACAGTGACCACAGAAATGTTTAAACTTCAGCTTTTGTTTAAAGA-GATGTGCTGTGAGTATTTATCGAGCCATGGTCTGTGGGGACACTGCTGGGAGAGGGAGCA-TTTCTGGAACCCATCGTGGCTTTCTTCCTTGTCTGGCCTCGGC-TTTTACTTTCCTTTTTTCATGGACCCCTCTATCTCTTGTGTCCAAACCCACCTACTTTTCCAGGTCTGG-CTAAGTGCCTTCTTCCTCCCATGTCCCACCCCTGTCCCCTACTGAGCCCCCT--TTTC s panTro4.chr1 225002473 1458 + 228333871 cgatcttggctccctgcaacctctgcctgctgggttcaggcgattctcctgcctcggcctcctgag-tagctgggattacaggcacatgccaccactcctggctaatttttgta-ttttttatggagatgg---ggttttaccacgttggccaggctagtctcaaactcctgg---------cctcaagtgatcc---acccgccttagcctcccaaagtgttgggattctgggtgtgagccaccgcacctagcctccctggattcttaatacagccctgagaggtaggcagtggggcagtgcggggaggcaggggcttgtt-agatgctgcccatagatgagaacactgagattcagagagggcaaaata-attcctagaggtgacaccgctTTTCAGAGTGGATGGGGTGACACCATATGTTTGTTTCTACCGTTCTTTTCCAaatcatacaacatatg-agccat-tcatcttgtgccaagcactgttcagaaggctccatcctcatgacacccctgtgggaagcttccaccatcaccactcctcttttacactggaggaa-gctggaccggatctaaggaatctg-cccagcatcacatgcctggtctgtggtggagctgggctatgaatgcc-aactctggaacctgtcctctggatggctgcatgagactgtCTCTCTATA-GGCACCTTATGTGGTCATTTTGGTTTCAGAAGAGGTACAGTAAGCAAATGTTCCTGGCTGGCGTGC-TGCAGCTGCCTTGGCGGGGTGGCAGGCAGGGGGCTGTGGTGGAGGCTGAGGCT-GGTCGT-CGTCCTCTGCCGCTGACAGT-CCCAGGCT-CTCTTCCCTCATCATC-TCAGATAG-CTTCGTGGTTGTCACTGTGTTGTTTTATATATGAATATTTTTTATGGATTTTTATATATGGATTGCCGTGTGACTTATGTTTCCCTGCCCTAAGCACACCGATGAAAGTACATTAATACCCAAAATGACTTTGAAAAGACCAAAAGAAACAAA-AAAAGTCCTAAATTCCGTGGGAGGAAAAACCATGATCCTTTAGCCCTACTCCAGAATAGGAAGAACTGAGAGCCAAAGCCAAGGCGGGGACAGCACCCTGGGAGC-CGATGGGCTGGTTAGTCCCATCCCAGATTATATGGAGGCACCCGGG-TGATTCCA--TTTCATTGAGAATTCTGTGTCTA-GAGCA-CCAGACAGTGACCACAGAGATGTTTAAACTTCAGCTTTTGTGTAAAGA-GATGTGCTGTGAGTATTTATCGAGCCATGGTCTGTGGGGACACTGCTGGGAGAGGGAGCA-TTTCTGGAACCCATCGTGGCTTTCTTCCTTGTCTGGCCTCGGC-TTTTACTTTCCTTTTTTCATGGACCTCTCTATCTCTTGTGTCCAAACCCACCTACTTTTCCAGATCTGG-CTAAGTGCCTTCTTCCTGTAGTGTCCCACCCCTGTCCCCTACTGAGCCCCCTCTTTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226369137 1484 - 229942017 tgatcttggctccctgcaacctctgcctgctgggttcgagtgattctcctgcctcggcctcctgagttagctgggattacaggcacatgccaccactcccggctaatttttgta-ttttttatggagatgggaaggttttaccatgttggccaggctagtctcaaactcctgggtatggagacctcaagtgatccaaaacccgccttggcctcccaaagtgttgggattccgggtgtgagccaccgcacccagcctccctggattcttaatacagccctgagaggtaggcagtggggcagtggggggaggcaggggcttgttaaggtgctgcccatagatgagaacacggagattcagagagggcaaaatagattcctagaggtgacaccgctTTTCAGAGTGGATGGGGTGACACCATATGTTTGTTTCTACTGTTCTTTCCCAAATCATACAACATGTGAAGCCATGTCATCTtgtgccaagcactgttcagaaggctccatcctcatgacacctctgtgggaagtgtc--atgtcaccactcctcttttacattggaggaaggctgaaccagacctaaggaatctgccccagcatcacatgcctggtctgtggtggaggtgggctatgaacgccaaactctggaacccgtcctctggatggctgcatgagactgtctctctATA-GGCACCTTATGTGGTCATTTTGGTTTCAGAAGAGGTACAGTAAGCAAATGTTCCTGGCTGGCGTGCTTGCAGGTGCCTTGGTGGGGTGGCA-------GGCTGTGGTGGAGGCTGAGGCTGGGTCGTCCCTCCTCTGCCACTGACAGTCCCCAGGCTCCTCTTCCCTCATCATCTTCAGATAGCCTTTGTGGTTGTCACTGTGTTGTTTTATATATGGATATTTTTAATGGATTTTTATATATGGATTGCCGTGTGACT--TGTTTCCCTGCCCTAAGCACACCGATGAAAGTACATTAATACTCAAAATGACTTTGAAAAGACCAAAAGAAACAAA-AAAAGTCCTAAATTCCATGGGAGGAAAAACCATGATTCTTTAGCCCTACTCCAGAATAGTAGGAACTGAGAGCCAAAGCCAAGGCAGGGACAGCACCCTGGGAGCTCGATGGGCTGGTTAGTCCTATCCCGGATTATATGGTGGCACCCGGGATGATTCCCATTTCCATTGAGAATTCTGTGTCTAGGAGCACCCAGACAGTGAGCACAGAAATGTTTGAACTTTAGCTTTTGTTTAAAGAGGATGTGCTGTGAGTA--TATCGAG-CATGGTCTGTGGGGACACTGCTGGAAGAGGGAGCATTTTCTGGAGCCCATCGTGGCTTTCTTCCCTGTCTGGCCTCAGCTTTTTACTTTCCTTTTTTCGTGGACCCCTCTATCTCTTGTGTCCAAACCCACCTACTTTTCCAGATCTGGCCTAAGTGCCTTCTTCCTTCAATGTCCCACCCCCGTCCCCTACTGAGCCCCCTCTTTTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140255047 1451 - 143122389 cgatcttggctcactgcaacctctgcctgctgggttcaagtgattctcatgcctcatcctcctgaa-tagctgggattacaggtgcttgccaccacacctggctaatttttgtatttttttatagagatgg---gattttgccacgtagcccaggctggtctcaaactcctgg---------cctcaagtgatcc---acccgccttggcctcccaaagtgttgggattccgggtgtgagccaccacacccagccTCCCCGGATTCTTAATACAGCCCTGAGAGGTAGGCAGT-GGGCAGTGCGGGGTGGCAGGGGCTTGGT-AGGTGCTGCCCATAGATGAGAACACGGCAATTCAGAGAGGGCAAAATA-ATTCCTAGAGGTGCCACCGCTTTTCAGAGTGGATGGGGTGACACCATATGTTTGTTTCTATTGTTCTTTTCCAaatcatacaacatatg-agccat-tcatcctgtgcctagcactgttcagaatgctccatcctcatgacacccctgtgggaagcttccaccatcaccactcctcttttacattggaggaa-gctggaccagatctaaggaatctg-cccagcatcacctgcctggtgtgtggtggagctgggctatgaacccc-aactctggaacctgtcctctggatggctgcatgagaccgtctctctATA-GGCACCTTATGTGGTCATTTTGGTTTCAGAAGAGGCACAGTAAGCAAATGTTCCTGGCTGGCGTGC-TGCAGCTGCCTTGGTGGGGTGGCAGGCAGGGGGCTGTGGCGGAGGCTGAGGCT-GGTCAT-CCTCCTCTGCCGCTGACAGT-CCCAGGCT-CTCTTCCCTCATCATC-TCAGACAG-CTTTCTGGTTGTCACTGTGTTGTTTTATATATGGATTTTTTATATGGATTTTTATATATGGATTGCCGTGTGACTTATGTTTCCCTGCCCTAAACACACCGATGAAAGTACATTAATACTCAAAATGACTTTGAAAAGACCAAAACAAACAAA-AAAAGTCCTCAATTCCGTGGGAGGAAAAAGCACGATCCTTTAGCTCTACTCCAGAATAGTAAGAACTGAGAGCCGATGCCAAGGCAGGGACAGCACCGTGGGAGC-TGATGGGCTGGTTAGTCCCATCCCAGATTATATGGAGGCACCTGGG-TGATTCCA--TTTCATTGAGAATTCTGTGTCTA-GAGCA-CCAGACACTGGCCACAGAAATGTTTGAACTTCAGCTTTTGTTTAAAGA-GATGTGTTGTGAGTGTTTATCGAGCTGTGGTCTGTGGGGACACTGCTGGGAGAGGGAGCA-TTTCTGGAGCCCATCGTGGCTTTCTTCCCTGTCTGTCCTCG--------CTTTCCTTTTATCATGGACCCCTCTATCTCTTGTGTCCAAACCCACCTACTTTTCCAGATCTGG-CTAAGTGCCTTCTTCCTCCAGTGTCCCACCCCTGTCCCCTACTGAGCCCCCTCTTTTC i nomLeu3.chr5 I 762 C 0 s rheMac3.chr1 16965343 1458 - 229590362 cgatcttggcttactgcaacctctgcctgctgggttcaagcgattctcctgtctcagcctcctgag-tagctgagattacaggcacgtgccaccactcacggctcatattcgta-ttttttatggagatgg---ggttttaccatgttgcccaggctagtctcaaactcctgg---------cctcaagtgatcc---acccaccttggcctcccaaagtgttgagattccaggtgtgagtcactgcacccagcctcccaggatttttaataaagccctgagaggtaggcggtggggtagtgctgggaggcaggggcttgtt-aggtgctgcccatagatgagaacactgagattcatagagagcaaaata-attcctagaggtgacaccgctTTTCTGAGTGGATAGAGTGACACCATATCTTTGTTTCTACCATTCTTTTCCAaatcatacaacatatg-agccat-tcatcttgtgccaagcactgttcagaatgctccatcctcatgacacctctgtgggaagcttccaccatcaccactcctcttttacattggaggaa-gctggaccagatctaaggaatctg-cccagcatcacatgcctggtctgtggtggagctgggctatgaacccc-aactctggatccTGTCCTCTGGACGGCTGCCTGAGACGGTCTCTCTCTA-GGCACCTTATGTGGTCATTTTGGTAGCAGAAGAGGCACAGTAAGCAAATGTTTCTGGCTGGTGTGC-TGCAGCTGCCTTGGTGGGGTGGCAGGCAGGGGGCTGTGGCAGAGGCAGAAGCT-GGTCAT-CCTCCTCTGCCACTGACAGT-CCCAGGCT-CTTTTCCCTCATCATC-TCAGATAG-CTTTGCGGTTGTCACTGTGTTGTTTCATAAATGGATTTTTTATGCGGATTTTTATATATGGATTGCCGCGTGACTTATGTTTCCCTGCCCTAAACACACCAGTGAAAGTACATTAATACTCAAAATGACTTTGGAAAGACCACAACAAACAAACAAAAGTCCTAAATTCCGTGGGAGGAAAACCCACGAATCTTTAGCCCTACTCCAGAGTCGTGAAAACTGAGAGCCGAAGCCAAGGTGAGGACA-CACCCCGGGAGC-TGACGGGCTGTTTAGTCCCAGCCTAGATTATATGGAGGCACCTGGG-TGATTCCA--TTTCATTGAGAATTCTGTGTCTA-GAGCA-CCAGACAGTGACCACAGAAATGTTTGCATTTCAGCTTTTGTTTAAAGA-GATGTGTTGTGAGTATTTGTCGAGCCATGGTCTGTGGGGACACTGCTGGGAGAGGGAGCA-TTTCTGGAGCCCATCATGGCTTTCTTCCCTGTCTGGCCTCTGC-TTTTACTTTCCTTTGATCATGGACCCCTCTATCTCTTGTGTCCAAACCCACCTACTTTTCCAGATCTGG-CTAAGTGCCTTCTTCCTCCAGTGTCCCACCCCTGTCCCCTGCTGAGCCCCCTCTTTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223728631 1458 - 227556264 caatcttggcttactgcaacctctgcctgctgggttcaagcgattctcctgtctcagcctcctgag-tagctgagattacaggcacatgccaccactcccggctaattttcgta-ttttttatggagatgg---ggttttaccatgttgcccaggctagtctcaaactcctgg---------cctcaagtgatcc---acccaccttggcctcccaaagtgttgagattccaggtgtgagtcactgcacccagcctcccaggattcttaatacagccctgagaggtaggcggtggggtagtgctgggaggcaggggcttgtt-aggtgctgcccatagatgagaacactgagattcatagagagcaaaata-attcctagaggtgacaccgctTTTCTGAGTGGATAGAGTGACACCATATCTTTGTTTCTACCGTTCTTTTCCAaatcatacaacatatg-agccat-tcatcttgtgccaagcactgttcagaatgctccatcctcatgacacctctgtgggaagcttccaccatcaccactcctcttttacattggaggaa-gctggaccagatctaaggaatctg-cccagcatcacatgcctggtctgtggtggagctgggctatgaacccc-aactctggatccTGTCCTCTGGACGGCTGCCTGAGACGGTCTCTCTCTA-GGTACCTTATGTGGTCATTTTGGTAGCAGAAGAGGCACAGTAAGCAAATGTTTCTGGCTGGTGTGC-TGCAGCTGCCTTGGTGGGGTGGCAGGCAGGGGGCTGTGGCAGAGGCAGAAGCT-GGTCAT-CCTCCTCTGCCACTGACAGT-CCCAGGCT-CTTTTCCCTCATCATC-TCAGATAG-CTTTGCGGTTGTCACTGTGTTGTTTCATAAATGGATTTTTTATGCGGATTTTTATATATGGATTGCCGCGTGACTTATGTTTCCCTGCCCTAAACACACCAGTGAAAGTACATTAATACTCAAAATGACTTTGGAAAGACCACAACAAACAAACAAAAGTCCTAAATTCCGTGGGAGGAAAAACCACGAATCTTTAGCCCTACTCCAGAGTCGTGAAAACTGAGAGCCGAAGCCAAGGTGAGGACA-CACCCCGGGAGC-TGACGGACTGTTTAGTCCCAGCCTAGATTATATGGAGGCACCTGGG-TGATTCCA--TTTCATTGAGAATTCTGTGTCTA-GAGCA-CCAGACAGTGACCACAGAAATGTTTGCATTTCAGCTTTTGTTTAAAGA-GATGTGTTGTGAGTATTTGTCGAGCCATGGTCTGTGGGGACACTGCTGGGAGAGGGAGCA-TTTCTGGAGCCCATCATGGCTTTCTTCCCTGTCTGGCCTCTGC-TTTTACTTTCCTTTGATCATGGACCCCTCTATCTCTTGTGTCCAAACCCGCCTACTTTTCCAGATCTGG-CTAAGTGCCTTCTTCCTCCAGTGTCCCACCCCTGTCCCCTGCTGAGCCCCCTCTTTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16778791 1447 - 220367699 caatcttggcttactgcaacctctgcctgctgggttcaagcgattctcctgtctcagcctcctgag-tagctgggattacaggcacatgccaccactcctggctaatttttgta-ttttttatggagatgg---ggttttaccatgttggccaggctagtctcaaactcctgg---------cttcaagtgatcc---acccgccttggcctcccaaagtgttgggattccaggtgtgagccactgcacccggcctccccGGATTCTTAGTACAGCCCTGAGAGGTAGGCAGTGGGGTAGTGCTGGGAGGCAGGGGCTTGTT-AGGTGCTACCCATAGATGAGAACGCTGAGATTCATAGAGGGCAAAACA-ATTCCTAGAGGTGACACCGCTTTTCCGAGTGGATAGAGTGACACCGTATCTTTGTTTCTACCGTTCTTTTCCAAATCATACAACATATG-AGCCAT-TCATCTTGTGCCAAACACTGTTCAGAATGCTTCATCCTCATGACACCTCTGTGGGCAGCTTCCACCATCACCACTCCTCTTTCACGTTGGAGGAA-GCTGGACCAGATCTAAGGAATCTG-CCCAGCATCACATGCCTGGTCTGTGGTGGAGCTGGGCTATGAACCCC-AACTCTGGAACCTGTCCTCTGGACGGCTGCCTGAGACTGTCTCTCTCTA-GGCACCTTATGTGGTCATTTTGGTAGCAGAAGAGGCACAGTAAGCAAATGTTTCTCGCTGGTGTGC-TGCAGCTGCCTTGGTGGGGTGGCAGGCAGGGGGCTTTGGCAGAGGCGGAAGCT-GGTCAT-CCTCCTCTGCCACTGACAGT-CCCAGACT-CTCTTCCCTCATCATC-TCAGATAG-CTTTGCG-----------GTTGTTTCATAAATGGATTTTTTATGCGGATTTTTATATATGGATTGCCGCGTGACTTATGTTTCCCTGCCCTAAACACACCAGTGAAAGTACATTAATACTCAAAATGACTTTGGAAAGaccacaacaaacaaacaaaagtcctAAATTCCGTGGGAGGAAAAACCACGAATCTTTAGCCCTACTCCAGAGTCGTGAAAACTGAGAGCCGAAGCCAAGGTGAGGACA-CACCCCGGGAGC-TGACGGGCTGTTTAGTCCCAGCCTAGATTATATGGAGACACCTGGG-TGATTCCA--TTTCATTGAGAATTCTGTGTCTA-GAGCA-CCAGACAGTGACCACAGAAATGTTTGCATTTCAGCTTTTGTTTAAAGA-GATGTGTTGTGAGTATTTGTCGAGCCATGGTCTGTGGGGACACTGCTGGGAGAGGGAGCA-TTTCTGGAGCCCATCATGGCTTTCTTCCCTGTCTGGCCTCTGC-TTTTACTTTCCTTCGATCATGGACCCCTCTATCTCTTGTGTCCAAACCCACCTACTTTTCCAGATCTGG-CTAAGTGCCTTCTTCCTCCAGTGTCCCACCCCTGTCCCCTGCTGAGCCCCCTCTTTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82576581 1456 + 85787240 caatcttggcttactgcaacctctgcctgctgggttcaagtgattctcctgtctcagcctcctgag-tagctgggattacaggcacatgccaccactcccggctaatttttgta-tttttt-tggagatgg---ggttttaccatgttggccaggctagtctcaaactcctgg---------cttcaagtgatcc---acccgccttggcctcccaaagtgttgggattccatgtgtgggccactgcacccagcctcccaggattcttagtacagccctgagaggtaggcagtggggtagtgctgggagggaggggcttgtt-aggtgctgcccatagatgagaacactgagattcatagagggcaaaaca-attcctagaggtgacaccgctTTTCCGAGTGGATAGAGTGACACCATATCTTTGTTTCTACCATTCTTTTCCAaatcatacaacatatg-agccat-tcatcttgtgccaagcactgttcagaatgctccatcctcatgacacctctgtgggaagcttccaccatcaccactcctcttttccattggaggaa-gctggaccagatctaaggaatctg-cccagcatcacatgcctggtctgtggtggagctgggctatgaacccc-aactctggaacttgtcctctggacgactGCCTGAGATGGTCTCTCTCTCTAGCACCTTATGTGGTCATTTTGGTATCAGAAGAGGCGCAGTAAGCAAATGTTCCTGGCTGGTGTGC-TGCAGCTGCCTTGGTGGGGTGGCAGGCAGGGGGCTGTGGCAGAGGCGGAAGCT-GGTCAT-CCTCCTCTGCCACTGACAGT-CCCAGGCT-CTCTTCCCTCATCATC-TCAGATAG-CTTTGTGGTTGTCACTGTGTTGTTTCATAAATGGATTTTTTATGCGGATTTTTGCATATGGATTGCCATGTGACTTGTGTTTCCCTGCCCTAAACACACCAGTGAAAGTACATTAATACTCAAAATGACTTTGGAAAGACCACAACAAACAAACAAAAGTCCTAAATTGCATGGGAGGAAAAACCATGAACCTTTAGCCCTACTCCAGAGTCGTGAAAACTGAGAGCCGAAGCCAAGGTGAGGACA-CACCCCGGGAGC-TGACGGGCTGTTTAATCCCAGCCTAGATTATATGGAGGCACCTGGG-TGATTCCA--TTTCATTGAGAATTC--TGTCTA-GAGCA-CCAGACAGTGACCACAGAAATGTTTGCGTTTCAGCTTTTGTTTAAAGA-GATGTGTTGTGAGTATTTGTGGAGCCATGGTCTGTGGGGACACTGCTGAGAGAGGGAGCA-TTTCTGGAGCCCATCATGGCTTTCTTCCCTGTCTGGCCTCTGC-TTTTACTTTCCTTTGATCATGGACCCCTCTATCTCTTGTGTCCAAACCCACCTACTTTTCCACATCTGG-CTAAGTGCCTTCTTCCTCCAATGTCCCACCCCTGTCACCTGCTGAGCCCCCTCTTTTC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178830144 2030 + 195471971 I e canFam3.chr7 36406699 1273 + 80974532 I e calJac3.chr19 14259887 0 - 49578535 C a score=431066.000000 s hg38.chr1_KI270759v1_alt 248421 182 + 425601 TCCGTGTTTTGTATCATGTACCATCCCTTGCCCAGATTTCTCTGATTAACCATTCACCACTCTGTTGCTGTCACCGCTTTATGGGTCTAGGTTTTCTCCTCCACTGAGTCTTTAGGCTACTTGAGGGTGGGAATCTTTGTTCCTATTGCGTTCATATCCCTGAAAATGCTTAGCCATATGTC s panTro4.chr1 225003931 181 + 228333871 TCCGTGTTTTGTATCATGTACCATCCCTTGCCCAGATTTTTCTCATTAACGATTCACCACTCTGTTGCTGTCACCGCTTTATGGGTCTAGGTTTTCTCCTC-ACTGAGTCTTTAGGCTACTTGAGGGTGGGAATCTTTGTTCCTATTGCATTCATATCCCTGAAAATGCTTAGCCGTATGTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226370621 181 - 229942017 TCCGTGTTTTGTATCATGTACCATCCCTTGCCCAGATTTTTCT-ATTAACCATTCACCACTCTGTTGCCATCACCGCTTTATGGGTCTAGGTTTTCTCCTCCACTGAGTCTTTAGGCTACTTGAGGGTGGGAATCTTTGTTCCTATTGCATTCATATCCCTGAGAATGCTTAGCCATATGTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140256498 181 - 143122389 TCCATGTTTTGTATCATGTACTATCCCTTGCCCAGATTTTTCT-ATTAACCATTCACCACTCTGTTGCTGTCACCACTTTGTGGGTCTAGGTTTTCTCCTCCACTGAGTCTTTAGGCTGCTAGAGGGTGGGAATGTTTGTTCCTGTTGCATTCATATCCCTGAGAATGCTTAGCCATATGTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16966801 180 - 229590362 TCC--GTTTTGTCTCATGTACTATCCCTTGCCCAGATTTATCTCATTAACCATTTGCCACTCTGTCGCTGTCACCACTTCATGGGTACAGGTTTTCTCCTCCGCTGAGTCTTTAGGCTACTTGACGGTGGGAATCTTTGTTCGTattgcattcatgtccctgaaaatgctcagccatatgtc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223730089 180 - 227556264 TCC--GTTTTGTCTCATGTACTATCCCTTGCCCAGATTTCTCTCATTAACCATTTGCCACTCTGTCGCTGTCACCACTTCATGGGTACAGGTTTTCTCCTCCGCTGAGTCTTTAGGCTACTTGACGGTGGGAATCTTTGTTCGTATTGCATTCATGTCCCTGAAAATGCTCAGCCATATGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16780238 178 - 220367699 TCC--GTTTTGTCTCATGTACTATCCCTTGCCCAGATTTCTCTCATTAACCATTCGCCACTCTGTCGCTGTCACCACTTCATGGGTACAGGTTTTCTCCTCCGCTGAGTCTTTAGGCTACTTGACGGTGGGAATCTTTGTTCGTATTGCATTCATGTCCCTGAGAATGCTTAGCCATA--TC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82578037 182 + 85787240 TCCGTGTTCTGTCTCATGTACTGTCCCTTGCCCTGATTTTTCTCATTAACCATTCGCCACTCTGTCGCTGTCACCACTTCGTGGGTACAGGTTTTCTCCTCCACTGAGTCTTTAGGCTACTTGACGGTGGGAATCTTTGTTCCTATTGCATTCATATCCCTGAAAATGCTTAGCCATATGTC i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36407972 158 + 80974532 tcctcaTTCTGTGCCATGTCCTACCCCCAGCACA-ATTCTTCTTGTTAACCACTTATCGCTTTAT-------GCACCTTCAT-GGTGTACTGTGTCTCCTGCAC--AGTCTTTTATCTGTGTGAGA------------GTTTACACTGCTTTCATGGCTCCCA-AATGCTTAGCTGTATGCC i canFam3.chr7 I 1273 C 0 e mm10.chr1 178830144 2030 + 195471971 I e calJac3.chr19 14259887 0 - 49578535 C a score=110741.000000 s hg38.chr1_KI270759v1_alt 248603 37 + 425601 AGACAGACAGAACTCCCTGAACTGAAAAACACAAAGA s panTro4.chr1 225004112 37 + 228333871 AGACAGACAGAACTCCCTGAACTGAAAAACACAAAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226370802 37 - 229942017 AGACAGACAGAACTCCCTGAACTGAAAAACACTGAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140256679 37 - 143122389 AGACAGACAGAACTCCCTGAACCGAAAAACACTAAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16966981 37 - 229590362 agaccgacagaactccctgaaCTGAAAAACACTAAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223730269 37 - 227556264 AGACCGACAGAACTCCCTGAACTGAAAAACACTAAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16780416 37 - 220367699 AGACAGACAGAACTCCCTGAACTGAAAAACACTAAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82578219 37 + 85787240 AGACCAACAGAACTCCCTGAACTGAAAAACACTAAGA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178832174 36 + 195471971 AGGCATATAGAACTGCCAGaattaaaatatattaaa- i mm10.chr1 I 2030 C 0 s canFam3.chr7 36408130 37 + 80974532 TAGCAGGTAGAATCTGCTGAGCTGAAAGACATTAAAA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14259887 0 - 49578535 C a score=50079.000000 s hg38.chr1_KI270759v1_alt 248640 13 + 425601 TGTGGAGAATAGC s panTro4.chr1 225004149 13 + 228333871 TGTGGAGAATAGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226370839 13 - 229942017 TGTGGAGTATAGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140256716 13 - 143122389 TGTGGAGTGTGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16967018 13 - 229590362 TGTGGAGTATAGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223730306 13 - 227556264 TGTGGAGTATAGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16780453 13 - 220367699 TGTGGAGTATAGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82578256 13 + 85787240 TGTGGAGTATAGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14259887 13 - 49578535 TGCGGGGGACAGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178832210 13 + 195471971 tataGAGCATAGC i mm10.chr1 C 0 C 0 s canFam3.chr7 36408167 13 + 80974532 TATAGAGTATGGC i canFam3.chr7 C 0 I 792 a score=10161.000000 s hg38.chr1_KI270759v1_alt 248653 4 + 425601 ACAG s panTro4.chr1 225004162 4 + 228333871 ACAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226370852 4 - 229942017 ACAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140256729 4 - 143122389 ACAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16967031 4 - 229590362 ACAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223730319 4 - 227556264 ACAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16780466 4 - 220367699 ACAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82578269 4 + 85787240 ACAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14259900 4 - 49578535 ACAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178832223 1 + 195471971 A--- i mm10.chr1 C 0 C 0 e canFam3.chr7 36408180 792 + 80974532 I a score=3207547.000000 s hg38.chr1_KI270759v1_alt 248657 1008 + 425601 TCCTTATATGACTTTTTC-CCTGCTT-GTCCCTATCATTTACCCATCACCTCTTAGTCCATC---------TGGTC-----ATCCattgattca-ttcaga---------ag-aca-ggtattacgtatcttctatgtg-ctagttacttt-ggggata-cccagatgagttaaa-catggtctct-atccttaaggaTTCCAGAAGTTGCTATCA-GAAAGAGTTAAA-AATCATTCTTCAGGTAGATAGCTCAAACTAAAAATACCTGTTATTATGGCCATCACT------CCGGCTTACCATGGCAGA---TAAGGCTG-AAATTTGTCCCAGATAATTGGCTTCCTGGTGAGCTTTCT----------CCCTCCTTCTTTTTCACTGAGTATACGCTAATATTCCT-CCAGTATTCATACTGCATGGTGAGGACAGCTGACGGTATA-GCAGCC--AGGGAAGGCTGCA-CCTGTGTTTC-CATTTTAGCGCTTTGATGTGCT-GCATGC-G-GTTGCCCTGCAATTAGTTCATATGCGTGAATCACAATGGCATATGTAAAACGTGTGCTCATACAGACCCCTCTCCAA-AGACCTCAC-GCATCCTTTGCTTCT--GGAGAGAATTCCCCTGAATGTATGTGATGAGGAAGTTGGGCTTTTCCTCTCTGTGCCAGGCTGAAGCG-AGGGGCTTTGCTCAAGGTCGTATAGAAAGTCGTCTGCCCTTCCAGGCCGTGCTCTTCCA--TTGGA-GGCAACACCTGGGCGTTCTTTGTTTTGCCTTTGCCGCAGAGGGAGAAATGTCATATCTTTCAAAATTCCAGTGTT-TCCTAGTCTTCTTTGAGAATGCCCCTGTTAAGATAGGTGAGAAGCACC----AGGGGTAGGCGAGAT-----------TC-TTGGATAATGTGTGTCCTGGAAGGTGGTGTATT--CTGGAATGGGGATGGGAGGAGGGGA--AAAGGATAAAGAAGGG------------------AATTCTTTTCGTTTCAAGCAATAGAAATTCAAACTGT-----------GATGCCTCA-----------------TGGAACCAGACCATGAGAAGGTCATGAGCGCCTGGAACTAAGATCTCTCGAGTGCTCCGGGA s panTro4.chr1 225004166 1008 + 228333871 TCCTTATATGACTTTTTC-CCTGCTT-GTCCCTATCATTTATCCGTCACCTCTTAGTCCATC---------TGGTC-----ATCCattgattca-ttcaga---------ag-aca-ggtattacgtatcttctatgtg-ctagttacttt-ggggata-cccagatgagttaaa-catggtctct-atccttaaggaTTCCAGAAGTTGCTATCA-GAAAGAGTTAAA-AATCATTCTTCAGGTAGATAGCTCAAACTAAAAATACCTGTTATTATGGCCATCACT------CCGGCTTACCATGGCAGA---TAAGGCTG-AAATTTGTCCCAGATAATTGGCTTCCTGGTGAGCTTTCT----------CCCTCCTTCTTTTTCACTGAGTATACGCTAATATTCCT-CCAGTATTCATACTGCATGGTGAGGACAGCTGACGGTATA-GCAGCC--AGGGAAGGCTGCG-CCTGTGTTTC-CATTTTAGCGCTTTGATGTGCT-GCATGC-G-GTTGCCCTGCAATTAGTTCATATGCGTGAATCACAATGGCATATGTAAAACGTGTGCTCATACAGACCCCTCTCCAA-AGACCTCAC-GCATCCTTTGCTTCT--GGAGAGAATTCCCCTGAATGTATGTGATGAGGAAGTTGGGCTTTTCCTCTCTGTGCCAGGCTGAAGTG-AGGGGCTTTGCTCAAGGTCGTATAGAAAGTCGTCTGCCCTTCCAGGCCGTGCTGTTCCA--TTGGA-GGCAACACCTGGGCGTTCTTTGTTTTGCCTTTGCCGCAGAGGGAGAAACGTCATATCTTTCAAAATTCCAGTGTT-TCCTAGTCTTCTTTGAGAATGCCCCTGTTAAGATAGGTGAGAAGCACC----AGGGGTAGGCGAGAT-----------TC-TTGGATAACGTGTGTCCTGGAAGGTGGTGTATT--CTGGAATGGGGATGGGAGGAGGGGA--AAAGGAGGAAGAAGGG------------------AATTCTTTTCGTTTCAAGCAATAGAAATTCAAACTGT-----------GATGCCTCA-----------------TGGAACCAGACCATGAGAAGGTCATGAGCGCCTGGAACTAAGATCTCTCGAGTGCTCCGGGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226370856 1042 - 229942017 TCCTTGTATGACTTTTTC-CCTGCTTCCTCCCTGTCATTTACCCATCACCTCTTAGTCCATC---------AGGTC-----ACCCattgattcatttcaga---------agaacatggtattacgtatcttctatgtg-ctagttactttgggggatatcccagatgagttaaa-cgtggtctctaatccttaaggaTTCCAGAAGTTGCTGTCACGAAATAGTTAAA-AATCATTCTCCAGGTAGATAGCTCAAACTAAAAATACCTGTTATTATGGCCATCACT------CCGGCTTATCATGGCAGCATTTAAGGCTGTAAATTTGTCCCAGATAATTGGCTTCCTGGTGAGCTTTCTGTGGCAGCGACCCTCCTTCTTTTTCACTGAGTATACGCTAATATTCCTGCTAGTATTCATACTGCATTGTGAGGACAACTGACAGTATAGGCAGCCCAGGGGAGTCCTGCACCCTGTGTTTT-CATTTTAGCGCTTTGATGTGCCGGCGTGCGG-GTTGCCCTGCAGTTAGTTCATGTGCGTGAATCACAATGGCATGTA-AAAACGTGTGCTCATACAGACCCCTCTCCAA-AGAACTCAC-GCATCCTTTGCTTCTGCGAAGAGAATTCCCCTGAATGTATGTGATGAGGAAGTTGGGCTTTTCCTCTCTGTGCGGGGCTGAAGCGTAGGGGCTTTGCTCAAGGTCATACAGAGAGTCGTCTGCCCTTCCGGGCCGTGCTCTTCCA--TTGGA-GGCAACACCTGGGCATTCTTTGTTTTGCTTTTGCCACAGAGGGAGAAACATCATATCTTTCAAAATTCCAGTGTT-TCCTAGTCTTCTTTGAGAATGGCCCTATTAAGATAGGCGAGAAGCACC----AGGGGTAGGCGAGAT-----------TCTTTGGATAATGTGCGTCCTGGAAGGTGGTGTATTTGTGGAAATGGGGATGGGAGAGGGGGA--AAAGGAGAAAGAAGGG------------------AACTCTTTTCGTTTCAAGCAATAGAAATTCGAACTGT-----------GATGTCTCA-----------------TGGAACCAGACCATGAGAAGGTCATGAACGCCCGGAACTAGGATCTCTCAAGTGCTCCGGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140256733 1008 - 143122389 TCCTTATATGACTTTTTC-CCTGCTT-TTCCCTGTCATTTACCCATCACCTCTCAGTCCATC---------TGGTC-----ACCCACTGattca-ttcaga---------ag-aca-tgtattacatatcttctatgtg-ctagttacttt-caggata-cccagatgagttaaa-catggtctct-atccttaaggaTTCCAGAAATTGCTATCA-GAAAGAGTTAAA-AATCATTCCTTAGGTAGATAGCTCAAACTAAAAATACCTGTCATTATGACCACCGCT------GTGGCTTATCATGGCAGA---TCAGGCTG-AAATTTGTCCCAGATAATTGGCTTCCTGGTGAGCTTTCT----------CCCTCCTTCTTTTTCACTGAGTATACGCTAATATTCCT-CCAGTATTCATACTTCATTGTGAGGACAACTGATAGTATA-GCAGCC--AGGGAAGGCTGCA-CCCGTGTTTT-CATTTTAGCGCTTTGATGTGCT-GCATGC-G-GTTGCCCTGCAATTAGTTCATATGCGTGAATCGCAATGGCATGT--AAAACGGGTGCTCATACGGACCCCTCTCCAA-AGAACTCAC-GCATCCTTTGCTTCT--GGAGAGAATTCCCCTGAATGTATGCGATGAGGAAGTTGGGCTTTTCCTCTCTGTGCCAGGCCGAAGCA-ATGGGCTTTGCTCAAGGTCATATAGAAAGTCGTCTGCCCTTCTGGGCCACGCTCTTCCA--TTGGA-GGCAACACCTGGGCATTCTTTGTTTTGCTTTTGCCGCAGAGGGAGAAACATCACATCTTTCAAAATTCCAGTGTT-TCCTAGTCTTCTTTGAGAATGCCCCTGTTAAGATAGGCGAGAAGCACC----AGGGGTGGGCGAGAT-----------TC-TTGGATAATGTGTGTCCTGGAAGGTGGTGTATT--CTGGAATGGGGATGGGAGAAGGGGAATAAAGGAGAAAGAAGGG------------------AATTCTTTTCGTTTCAAGCAAGAGAAATTCAAACTGT-----------GATGTCTCA-----------------CGGAACCAGACCATGAGAAGGTCATGAACGCCCAGAACTAGGATCTCTCGAGTGCCCTGGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16967035 1008 - 229590362 TCCTTATATGACGTTTTC-CCTGCTT-TTCCCTATCATTTACCCGTCACCTCTTAGTCCATC---------TGGTC-----ATCCattgattca-ttcaga---------ag-aca-tgtattatggatcttctgtgtg-ctagttacttt-gggaata-ccccgatgagttaaa-catggtctct-atctttaaggaTTCCAGAAATTGCTGTCC-GAAAGAGTTAAA-AATCATTCTTTAGGTAGATAGCTCAAACTAAAAATACCTGTTATTATGACCATCACT------CTGGCTTATCATGGCAGA---TAAGGCTG-AAACTTGTCCCAGATAATTGGCTTCCTGGTGAGGTTTCT----------CCCTCCTTCTTTGTCACTGAGTAGACGCTAATATTCCT-ACAGTATTCATACCGCCTTGTGAGGACAACCGATAGTGCA-GCAGCC--AGGGAAGGCTGCA-CCTGTGCTCT-CATTTTAGCGCTTTGATGTGCT-GCATGC-G-GTTGCCCTGCAGTTAGTTCACATGCGTGAA-TACAATGGCGTGGAAAACATGTGTGCTCGTACACACCCCTCTCCAA-AGAATTCAC-ACATGCTTTGCTTCT--GCAGAGAACTCCTCTGAATGTATGTGATGAGGAAGCTGGGCTTTTCCTCTCTGTGCTGGGCTGAAGCG-AGGGG-TTTGCTCACGGTCATATAGAAAGTCATCCGCTCAACCGGGCCATGCTCTTCCA--TCGAATGGCGACACCAGGGCCTTCTTTGTTGTGCTTTTGCCGCAGAGGGAGAAACGTCATCTCCTTCAAAATTCCAGTGTT-TCCTGGTCTCCTCTGAGAATGCCCCTCTTATGATAGGCGAGAAGCACC----AGGGATAGGCGGGAT-----------TC-TTGGATAACGTGTGTCCTGGAAGGTGCTGTATT--CTGGAATGGGGAAGGGAGGAGGGGAATAAAGGAGAAAGAAGGG------------------AATTCTTTTCATTTCAAGCAATAGAAATTCAAACTGT-----------GATGTCTGG-----------------TGGAACCAGAGCACGAGAAGGTCATGAACGCCCGGAACTAGGATCTCCCGAGTGCTCC-GGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223730323 1008 - 227556264 TCCTTATATGACGTTTTC-CCTGCTT-TTCCCTATCATTTACCCGTCACCTCTTAGTCCATC---------TGGTC-----ATCCattgattca-ttcaga---------ag-aca-tgtattatggatcttctgtgtg-ctagttacttt-gggaata-ccccgatgagttaaa-catggtctct-atctttaaggaTTCCAGAAATTGCTGTCA-GAAAGAGTTAAA-AATCATTCTTTAGGTAGATAGCTCAAACTAAAAATACCTGTTATTATGACCATCACT------CTGGCTTATCATGGCAGA---TAAGGCTG-AAACTTGTCCCAGATAATTGGCTTCCTGGTGAGGTTTCT----------CCCTCCTTCTTTGTCACTGAGTAGACGCTAATATTCCT-ACAGTATTCATACCGCCTTGTGAGGACAACCGATAGTGCA-GCAGCC--AGGGAAGGCTGCA-CCTGTGCTCT-CATTTTAGCGCTTTGATGTGCT-GCATGC-G-GTTGCCCTGCAGTTAGTTCACATGCGTGAA-TACAATGGCGTGGAAAACATGTGTGCTCGTACACACCCCTCTCCAA-AGAACTCAC-ACATGCTTTGCTTCT--GCAGAGAACTCCTCTGAATGTATGTGATGAGGAAGCTGGGCTTTTCCTCTCTGTGCTGGGCTGAAGCG-AGGGG-TTTGCTCACGGTCATATAGAAAGTCATCCGCTCAGCCGGGCCATGCTCTTCCA--TCGAATGGCGACACCAGGGCCTTCTTTGTTGTGCTTTTGCCGCAGAGGGAGAAACGTCATCTCCTTCAAAATTCCAGTGTT-TCCTGGTCTCCTCTGAGAATGCCCCTCTTATGATAGGCGAGAAGCACC----AGGGATAGGCGGGAT-----------TC-TTGGATAACGTGTGTCCTGGAAGGTGCTGTATT--CTGGAATGGGGAAGGGAGGAGGGGAATAAAGGAGAAAGAAGGG------------------AATTCTTTTCATTTCAAGCAATAGAAATTCAAACTGT-----------GATGTCTGG-----------------TGGAACCAGAGCACGAGAAGGTCATGAACGCCCGGAACTAGGATCTCCCGAGTGCTCC-GGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16780470 1005 - 220367699 TCCTTATATGACTTTTTC-CCTGCTT-TTCCCTATCATTTACCCGTCACCTCTTAGTCCATC---------TGGTC-----ATCCATTGATTCA-TTCAGA---------AG-ACA-TGTATTATGGATCTTCTGTGTG-CTAGTTACTTT-GGGAATA-CCCCGATGAGTTAAA-CATGGTCTCT-ATCTTTAAGGATTCCAGAAATTGCTATCA-GAAAGAGTTAAA-AATCATTCTTTAGGTAGATAGCTCAAACTAAAAATACCTGTTATTATGACCATCA--------CTGGCTTATCATGGCAGA---TAAGGCTG-AAACTTGTCCCAGATAATTGGCTTCCTGGTGAggtttct----------ccctccttctttgtCACTGAGTAGACGCTAATATTCCT-ACAGTATTCATACCGCCTTGTGAGGACAACCGATAGTGCA-GCAGCC--AGGGAAGGCTGCA-CCTGTGCTCT-CATTTTAGCGCTTTGATGTGCT-GCATGT-G-GTTGCCCTGCAGTTAGTTCACATGCGTGAGCCACAATGGCATGGAAAACA--TGTGCTCGTACACACCCCTCTCCAA-AGAACTCAC-ACATGCTTTGCTTCT--GCAGAGAACTCCCCTGAATGTATGTGATGAGGAAGCTGGGCTTTTCCTCTCTGTGCTGGGCTGAAGCG-AGGGG-TTTGCTCACGGTCATATAGAAAGTCATCCGCTCAACCGGGCCATGCTCTTCCA--TCGAATGGCGACACCAGGGccttctttgttttgcttttgccgCAGAGGGAGAAACGTCATCTCCTTCAAAATTCCAGTGTT-TCCTAGTCTCCTCTGAGAATGCCCCTATTATGATAGGCGAGAAGCACC----AGGGATAGGCGGGAT-----------TC-TTGGATAACGTGTGTCCTGGAAGGTGCTGTATT--CTGgaatggggaagggaggaggggaataaaggagaaataaagg------------------aatTCTTTTCATTTCAAGCAATAGAAATTCAAACTGT-----------GATGTCTGG-----------------TGGAACCAGAGCACGAGAAGGTCATGAACGCCCGGAACTAGGATCTCCCGAGTGCTCC-GGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82578273 1013 + 85787240 TCCTTATATGACGTTTTC-CCTGCTT-TTCCCTATCATTTACCCGTCACCTCTTAGTCCATC---------TGGTC-----ATCCattgactca-ttcaga---------ag-aca-tgtattatgtatcttctgtgtg-ctagttacttt-ggggata-cccagatgagttaaa-catggtctct-atctttaaggaTTCCAGAAATTGCTATCA-GAAAGAGTTAAA-AATCATTCTTTAGGTAGATAGCTCAAACTAAAAATACCTGTTATTATGACCATCACT------CTGGCTTATCATGGCAGA---TAAGGCTG-AAACTTGTCCCAGATAATTGGCTTCCTGGTGAGGTTTCC----------CCCTCTTTCTTTGTCACTGAGTAGACGCTAATATTCCT-ACAGTATTCATACTGCCTTGTGAGGACAACCAATAGTGCA-GCAGCT--GGGGAAGGCTGCA-CCTGTGCTCT-CATTTTAGCGCTTTGATGTGCT-GCATGT-G-GTTGCCCTGCAGTTAGTTCACATGCGTGAACCACAATGGCATGGAAAACATGTGTGCTCGTACAGACCCCACTCCAA-GGAACTCAC-ACATCCTTTGCTTCT--GCAGAGAACTCCCCTGAATGTATGTGATGAGGAAGATGGGCTTTTCCTCTCTGTGCTGGGCTGAAGCG-AGGGG-TTTGCTCAGGGTCATATAGAAAGTCATCCGCTCAACCGGGCCATGCTCTTCCA--TCGAATGGCGACACCAGGGCTTTCTTTGTTGTGCTTTTGCCGCAGAGGGAGAAACGTCATATCCTTCAAAATTCCAGTGTT-TCCTAGTCTCCTCTGAGAATGCCCCTGTTATGATAGGTGAGAAGCACCAGGGAGGGATAGGCGGGAT-----------TC-TTGGAAAACGTGTGTCCTGGAAGGTGATGTATT--CTGGAATGGGGAAGGGAGGAGGGGAATAAAGGAGAAAGAAGGG------------------AATTCTTTTCATTTCAAGCAATAGAAATTCAAACTGT-----------GATGTCTCA-----------------TGGAACCAGAGCAGGAGAAGGTCATGAACGCCCAGAACTAGGATCTCCCGAGTGCTCC-GGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14259904 1000 - 49578535 TCCCTACATGATCCTTTC-CCTGCTT-TTCCCTGTCGTTTACACAGCACCTGTTAGTCCATC---------TGGTC-----ATCCGttgattca-ttcgta---------ag-acc-cgtgttacgtatcttctatgtg-c----tacttt-ggggata-ccca-ctgagttaaa-gatggtctct-a-ccttaaggaTTCCAGAAATTGGTATCA-GAAAGAGTTAAA-AATCATTCTTTAGGTAGATAGCTGAAACTAAAAATTTCTGTTATTATTGTCATCACT------CTGGCTTATCGTGGCAGA---TAAGGCTG-AAATTTGTCCCAGGTAATTGGCCTCCTGGTGACCTTTCT----------CGCTCCCTTGTTTTTGCTGAGCATACTGTAACATTCCC-ACAGTCTTCGGACTGCATTGTGAGGACAGCTGGGAGGACA-GCGGTC--AGGGA-GGCTGTA-CCTGCGTTTT-CAGTTCAGTGCTTCGACGCGCT-CCGTGC-G-GGCGTCCTGCAGTTCGTTCACATGCAAGAGTCACAACGACATGT--AAAGCATGCGCTCAGGCACACCCTTCTCCAA--GAATGCACAACATCCCGTGCTTCT--GGATAGAATTCCCCTGAATGCGTGTGAGGGGGATGTTGGGCTTTTCCTGTCTGTGCCGGGCTGAAGCG-CAGGGCTTTGTTCAAGGTCTTCTAGAAAGTCATCTGCCATTCCGGGTCCAGCTCTT-CA--TCACA-GGCAACACCTGTGCATTCTTTGTTTTGCTTTTACCATGGACTGAGAAACTTCTTATCTTTCAAAATTCCAGTGTT-TCCTAGTCTCCTTTGAAAATACCCCTGTTAAGATAGGAGAGAAGCACC----AGGAATAGGCGAGAA-----------TC-TTGGATAATGTGAGTCCTGGAAGGTGGCGTATT--CTGGAATGGGGATGGGTGGAGGGGAATGAAGGAGAAAGAAGGG------------------AATTCTTTCCGTTTCAAGCAATAGAAATTCAAACTGT-----------GGTATCTCA-----------------TGGAACCAGACTGTGAGAAGCGCACGAACGCCTGGAAGTAGGATCTACTGAGTGTTTCAGGA i calJac3.chr19 C 0 I 13 s mm10.chr1 178832224 998 + 195471971 GTTATATGTGACAATTCCTTCTGCTT-TTACCT-TTATAAACCCATCCTCCATCCATCCTCCACCATTGATTGATTGATAGATTCATTCATTCA-TTCATAAACTTACTTAG-TTT-TGTATTCCATATTTTCTAAGTATCAAGTTACTTTTGGGAACA-CTCAAATAAATTAAATTCTTTTATCT-CTTCTTATGGATCCCAGATACTGCTATTC-TAAAGAGTTAAATAATCATACGTTAGGTAGACAACTCAAACTAAAAATACCTATTATTGTTATCACCACT------CTGCTTTATCGTGGCAGA---TGAGACCA-GAATTTATGCAGGGTAATTGGCTTCCTGGCTCGTCGTCT----------GCCCTGTTCCTTTTTACTGAGGACAGCATAGTATCCCT-GCAGC-TGCTCATCACACCGTGGTGACAGCCAGCCATGCA-GGCATC--AGCGAAGGCTTGA-CTT-CCCTCT-GTCTTAAACACTTTAATATGCT-GCCTGC-ACAGCATCCTGCAGTTAGTTTGTGTGGCAAAGTCCCAGCGATGTGTA-AACATTTTTGTTCATCCAAGATTGT-TCAAG-AGCACACAA-ATATCACTTGCTTAA--GACACGTGTCCTCTGAAAT-------AGCAAGAAGTGATACTTTGT-------TGAGGGGTTGCTATG-AGGGGCTTTGCTCGAGGTCAGATC-ATAGCCCTCTCCTATTCTTGGTCATGACTGTTCATCTCTGA-GGCACCTCCTACACAGTC--CATTCTTCTTTGACTATCGATGGGTAAACTTCATGCATTTTGAAATTCCAGTGTT-GTCTAGCCTTTCTTGGGTTTGGCTTCTT---AATAGGGGATGACCCCA----AGGGATAGGCAGGACCTTAAAGTT-GTC-TTGAATAGTGCATATCCTGTGAGGTGTCCGAGA--TGAGACTGGGGACTGGAGGAGGGGT-----TGCACCAGTTACA------------------ACTCTTCTTAGTTTTAAGCAACAGAAAACCTGACTG---------------GTCTTA-----------------TGAAAC--------------ACCGGGAGGGCCTCTGTTTCCTATCTCCTGG-----CCAGGA i mm10.chr1 C 0 I 1 s canFam3.chr7 36408972 1058 + 80974532 TTCTTCTATTTTGCTTCC-TTCGTCT-GTCAT--TCATTTACCCACCATGCACTCACCCACG---------TGTCT-----ATTCACCAGTTGA-TTGATA---------AG-GCA-TGCATCACGGACCTTCTATGCC-TTGGTCTCTCT-GCTGATA-CACAGATGAGTTCAA-AAT-GCCCCT-GCCCTTAAGAATCCCGGAAATTGCTATTC-AAAAGAGTTAAA-AATCATT--GTAAGTAGATAACGCACACTAAAAATACCTATTATTATTATTATCATCACCGTGCTGGCTTATCATGGCAGA---TAAGGCTG-AAATTTGTGCAAGATAATTGGCTTCCCAGTGAGTTTTCT----------CCCTTGCTCCTTTTTACTGAGTACACTATAATATTCCT-ACAGGATTCATATTGCATCGTGATGACAACTGATAGTGCA-GCAGGC--AGGAAAGAATGTA-CTTTTGTTTCGTTTTTTAACACACTGATGTACT-ACCT-C-A-ATTCCCCTGCAATTAGTTTGTATGAATGAATCACGGTGGCATACAAAGCATCTGTAGTCACACAGACTCTTTCCTAGGAGAACGCAC-ATATCCTCTGCTTGC--AGAGAGAATTCTGTGGAAAGCTTGTGCTCAGAAAGTTGTACTGTCCCCCTCCGAGGTGGGGTGAGGTG-AGGGGCTTCATTCAAGGTCATACAGAATTCCGGCTCCCACTCTGGGCTGTGCTCTGCTA--T----------CCCCTGTGCAGTCTCTGCTCTGCTTGGGCCAGTGAGGGAGAGCCCTACTACCTTCCAGAGTCCCAGTGTTAGCCTCCTTTCCTTTGAGAATACACCTGTTACGAGGGGAGGCTGGCATC----CGTGACGGGTCAGGTTCTGAAGTCAATC-TTGCAAAATATGTGTACTCGCAGGTGGTACAGT--CTAGAATAGGGATGGGAGGAAGGGAATAAAGAAGAACGAAAGGGGTTTTGTATTAAGTAGAAGTCTTTTTAGTTTCAAGTGACAAGCACTCAAACTGTCAGAAGCTGGAAATGACTGGGGGGATATTGGTGGCCCTGGAACCAGACCATGCT---GTCAGGGAGTCCTGGGGCGAGGGTATGCTATGCGCTTCAGGA i canFam3.chr7 I 792 C 0 a score=1073894.000000 s hg38.chr1_KI270759v1_alt 249665 466 + 425601 CGCTTCTCGCCTC-GTCTCTTACGTGTGCTTCTTCTCACATTTTGGCTTAATTCTTCATT---TCAGGCCAGCT-TT---------------------------------CTC----------TCTTACAGCTGCCACCAGCAGACTGGACAGACTCCTGTCCTCTCTGGCCCTAAACTCAAAACTTCCAGGAGGGAGCTCAGATGAGCGGGCG------GTTGGGGGTCAGGAAGCGGCTGCTCAGATGAAGGGGGTGCTGGGGTTGGGGTG--C-TCAGGAGCATCTGCCTGTGTGGAAGAC---GCTATCCTACAAGAAGGCTGGAAAGACAGACAAACGTCA-CCCCCTGCATTTTTTGATGGTTTGTAGGAAGTGTCAGTGAGCATTTAGGAGAAAAACCCAAGACCAGGTTACACAGAGCATGTCAGGTCTCAAATCCCGACATGACTCCTGTCAAACCCAGTGCCAGGGAGGAGGGGAGCCCTTCACCCAATCCGTA---TTTA--CCGAGCATTGACT------------GGGT-------------------GC s panTro4.chr1 225005174 466 + 228333871 CGCTTCTCGCCTC-GTCTCTTACGTGTGCTTCTTCCCACATTTTGGCTTAATTCTTCATT---TCAGGCCAGCT-TT---------------------------------CTC----------TCTTACAGCTGCCACCAGCAGACTGGACAGACTCCTGTCCTCTCTGGCCCTAAACTCAAAACTTCCAGGAGGGGGCTCAGATGAGCGGGCG------GTTGGGGGTCAGGAAGCAGCTGCTCAGATGAAGGGGGTGCTGGGGTTGGGGTG--C-TCAGGAGCATCTGCCTGTGTGGAAGAC---GCTATCCTACAAGAAGGCTGGAAAGACAGACAAACGTCA-CCCCCTGCATTTTTTGATGGTTTGTAGGAAGCGTCAGCGAGCATTTAGGAGAAAAACCCAAGACCAGGTTACACAGAGCATGTCGAGTCTCAAATCCCGACATGACTCCTGTCAAACCCAGTGCCAGGGAGGAGGGGAGCCCTTCACCCAATCCGTA---TTTA--CCGAGCATTGACT------------GGGT-------------------GC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226371898 472 - 229942017 TGCTTCTCTCCTC-GTCTCTTATTTGTGCTTCTTCCCACATTTTGGCTTAATTCTTCATT---TCGGGCCAGCTCTT---------------------------------CTC----------TCTTACAGCTGCCACCAGCAGACTGGACAGACTCCTGTCCTCTCTGGCCCTAAACTCAAAACTTCCAGGAGGGGGCTCAGATGAGCGGGCA------GTTGGGGGTCAGGAAGCAGCTGCTCAGATGAAGGGGGTGCTGGGGTTGGGGTG--C-TTAGGAGCATCTGCCTGCGTGGAAGAC---ACTATCCTACAAGAAGGCTGGAAAGACAGACAAACGTCA-CCCCCTGCATTTTTTGATGGTTTGTAGGAAGCGTCAGCAAGCATTTAGGAGAAAAAGCCAAGACCAAGTTACACAGAGCATGTCAGGTCTCAAATCCCGACATGACTCCTGTCAAACCCAGTGCCAGGGAGGAGCGGAGCCCTTCACCCAATCTGTGTGCTTTACCCCGAGCATTGACT------------GGGT-------------------GC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140257741 466 - 143122389 CGCTTCTGTCCTC-ATCTCTTATTTGTGCTTCTTCCCACATTTTGGCTTAATTCTTCATT---TCAGGCCAGCT-TT---------------------------------CTC----------TCTTACAGCTGCCACCAGCAGACTGAACAGACTCCTGTCCTCTCTGGCCCTAAACTCAAAACTTCCAGGAGCGGGCTCAGATGAGCGGGCG------GTTGGGGGTCAGGAAGCGGCTGCTCAGATGAAGGGGGTGCTGGGGTTGGGGTG--C-ACAGGAGCATCTGCCTGCGTGGAAGAC---GCTATCCTACAAGAAGGCTAGAAAGACAGACAAACGTCG-CCCCCTGCATTTTATGATGGTTTGTAGGAAGCGTCAGCGAGCATTTAGGAGAAAAAGCCAAGACCAAGTTACACAGAGCATGTCAGGTCCCAAATCCCGACGTGACTCCTGTCAAACCCAGTGCCAGGGAGGAGGGGAGCCCTTCACCCAATCCGTA---TTTA--CCGAGCATTGACT------------GGGT-------------------GC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16968043 495 - 229590362 CGCTTCTCTTCTC-GTCTCTTATTTGTGCTTCTTCCCACATTTTGGCTTAATTCTTCGTT---TCAGGACACCT-TT---------------------------------CTC----------TCTTACAGCGGCCACCAGCAGACTGG-CAGAGCCCTGTCCTCTCTGGCCCTAAACTCAGAACTTCCAGG-GGGGGCTCGGATGAGCAGGCG------GTTGGCGGTCAGGAAGCGACTGCTCAGATGAAGAGGGTACCAGGACTGGGGTACCC-TCAGGAGCATCTGCCTGCATGGAAGAC---GCTACCCTACAAGAAGGCCGGAAGGACAGACAGATGTCG--CCCCTGCATTTTTTGATGGTTTGTAGGAAGCATCAGCGAGCATTTAGGAGAACAAGCCAAGACCAAGTTACACAGAAAATGACAGGCCTCAAATCCAGACGCAACCCCTGTCAAACCCAGTGCTGGGGAGGCGGGGAGCCCTTCACCCAG-CCATA---TTTA--CCGAGTATTGACTCAGGGTTTATCGGGGTTTAATCGATTATAGATAAAGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223731331 493 - 227556264 CGCTTCTCTTCTT-GTCTCTTATTTGTGCTTCTTCCCACATTTTGGCTTAATTCTTCGTT---TCAGGACAGCT-TT---------------------------------CTC----------TCTTACAGCGGCCACCAGCAGACTGG-CAGAGCCCTGTCCTCTCTGGCCCTAAACTCAGAACTTCCAGG-GGGGGCTCGGATGAGCAGGCG------GTTGGCGGTCAGGAGGCGACTGCTCAGATGAAGGGGGTACCAGGACTGGGGTG--C-TCAGGAGCATCTGCCTGCATGGAACAC---GCTACCCTACAAGAAGGCCGGAAGGACAGACAGATGTCG--CCCCTGCATTTTTTGATGGTTTGTAGGAAGCATCAGCGAGCATTTAGGAGAACAAGCCAAGACCAAGTTACACAGAAAATGACAGGCCTCAAATCCAGACGCAACCCCTGTCAAACCCAGTGCTGGGGAGGCGGGAAGCCCTTCACCCAG-CCATA---TTTA--CCGAGTATTGACTCAGGGTTTATCGGGGTTTAATCGATTATAGATAAAGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16781475 492 - 220367699 CGCTTCTCTTCTC-ATCTCTTATTTGTGCTTCTTCCCACATTTTGGCTTAATTCTTGGTT---TCAGGCCAGCT-TT---------------------------------CTC----------TCTTACAGCGGCCACCAGCAGACTGG-CAGACCCCTGTCCTCTCTGGCCCTAAACTCAGAACTTCCAGG-GGGTGCTCGGATGAGCAGGCG------GTTGGCGGTCAGGAAGCGACTGCTCAGATGAAGGGGGTACCAGGACTGGGGTG--C-TCAGGAGCATCTGCCTGCATGGAAGAC---GCTACCCTACAAGAAGGCCGGAAAGACAGACAGATGTCG--GCCCTGCATTTTTTGATGGTTTGTAGGAAGCATCAGCGAGCATTTAGGAGAACAAGCCAAGACCAAGTTACACAGAAAATGACAGGCCTCAAATCCAGACGCAACCCCTGTCAAACCCAGTGCCGGGGAGGCGGGGAGCCCTTCACCCAG-CCATA---TTTA--CCGGGTATTGACTCAGGGTTTATCGGGGTTT-ATCGATTATAGATAAAGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82579286 462 + 85787240 CGCTTCTCTCCTC-GTCTCTTATTTGTGCTTCTTCCCACATTTTGGCTTAATTCTTCATT---TCAGGCCGGCT-TT---------------------------------CTC----------TCTTACAGCGGCCACCAGCAGACTGG-CAGACCCCTGTCCTCTCTGGCCCTAAACTCAGAACTTCCAGG-GGG-GCTCGGATGAGCAGGCG------GTTGGCCGTCAGGAAGCAGCTGCTCAGATGAAGGGGGTACCAGGACTGGGGTG--C-TCAGGAGCATCTGCCTGCGTGGAAGAC---ACTACCCTACAAGAAGTCCGGAAAGACAGACAGACGTCG-CCCCCTGCATTTTTTGATGGTTTGTAGGAAGCATCAGCGAGCCTTTAGGAGAAAAAGCCAAGACCAAGTTACACAGAAAATGACAGGCCTCAGATCCAGACGTGACCCCTGTCAAACCCAGTGCTGGGGAGGTGGGGAGCCCTTCACCCAATCCGTA---TTTA--CCGAGCATTGGCT-------------GGT-------------------GC i chlSab2.chr25 C 0 C 0 s mm10.chr1 178833223 398 + 195471971 --------CACCC-AAATCCTGTCGGTGATTCTTTATACACTGTAACATCGATCTCTACC---CCTGACCACAT-TT--CCCCA-ACAACTGCTGAAGTTTGGAGAGAGCCTC----------CCCCACAGC--CCACCAGCAGGCTG---------CTGTCCTTTCTGGTACAAACCTTAGAAGT-------GAAGTCCCA-----------A------GTTGGGGCTCA----------GCTCAG----AGTAGATGGAAGGACAGAGGGA--TGGCATGAATGTCAGGCAG-ATGG--------GCCATCCTG-GAGAAAGCTGGGCAGTTGTGCACGAGTCA--GTCCTG----------------GTAGGCAG--------AACATCAGGAGTGAAAATCCAAAACAGAG-----------GTGTGAGGT----AGTTGTGCCTGAGCTCAGGTGAACCCCTGTGCCAAAGTGAAGGCGA-TCATTTACCCAGCCATCG---TTAA--CTAAGTATCTACT------------ATAT-------------------GC i mm10.chr1 I 1 I 842 s canFam3.chr7 36410030 457 + 80974532 CTCTCTTTCCCTCTGTCTCCTGGATGTGCTTCCTCCCATATTTTGGCTTCATTCTTCTTCAGGTCAGACCAGCT-TTTGCCTCATCCAGCTGCTAACAACT---------CTCAACTGTCAAGTCTCACAGCTCCCAC---CAGACCAGACAGGTTCTGATCTTCTCTGACCCTAAGCTCAAAA--TCCAGGCAAGGGCTGGGGCAGGCCCATGTCAGGTATAGGGGCTAAGAAAGTGGTTGCTCCCACTGGCACATCGTCAGGGTTGGCGTG--A-GGAGGAGCATCT--CCAAGTAGAAGACATTGCTACCCTACAAGAAGT------AGACAAATGAAGGTTGCCGCCCTCCACTTATGGGTGATCTGCAGGAAGCATGGATGGCTGCTTAAGAGGAAAC----------ATTGATACAGGGGATGATGCACCATGAAT----------------TCAAACCCCGTATTGG------------------ACCCAGACTATA---TTTA--TTGAGCATTTACT------------ATGT-------------------GC i canFam3.chr7 C 0 C 0 e calJac3.chr19 14260904 13 - 49578535 I a score=725651.000000 s hg38.chr1_KI270759v1_alt 250131 289 + 425601 CTGTGAAATGAGGACT-T---GGGGGGGTTCATTTTGTGGACCACTGATTTCACAATCATTTAGCAGTTTCCAGGGGGAGAAAAGTGGCCTGCGTATTCAACAG----AGCTTAGAGAA--GAGACTGTGTAGGGATTTGCCCAGGGAGTGCAGTAGGGAGAGGTGCATCACCAAGAATATCGGAGACTTC----------------------------------------TCCTTAGCAGGCTCATCGTTTCCA-AAGAGATGGAGATGCAGTCCCGAGATAGCGCTCCGGCTTGCTGGGGACACTGGCTCCAGGTGGACAGTCTTACGTCTGCCTGgc s panTro4.chr1 225005640 287 + 228333871 CTGTGAAATGAGGACT-T----GGGGGGTTCATTTTGTGGACCACTGATTTCACAATCATTTAGCAGTTTCCAGGGGGAGAAAAGTGGCCTGCATATTCAACAG----AGCTTAGAGAA--GAGACTGTGTAGGGATTTGCCCAGGGAGTGCAGTAGGGAGAGGTGCATCACCAAGAAAATCGGAGACTTC----------------------------------------TCCTTAGCAGGCTCATCGTTTCCA-AAGAGATGGAGATGCAGTCCCGAGATAGCGCTCCGGCTTGCTGGGGACACTGGCTCCAGGTGGACAGTCTTA-GTCTGCCTGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226372370 290 - 229942017 CTGTGAAATGAGGATT-T---GGGGGGATTCATTTTGTGGACCACTGATTCCACAATCATTTAGCAGTTTCCA-GGGGAGAAAAGTGGCCTGCGTATTCAACAG----AGCTTAGAGAATGGAGACTGTGTAGGGATTTGCCCAGGGAGTGCAGTAGGGAGAGGTGCATCGCCAAGAAAATCGGAGGCTTC----------------------------------------TCCTTAGCAGGCTCATCGTTTCCA-AAGAGATGGAGATGCAGTCCCGAGTCAGCGCTCCAGCTTGCTGGGGGCACTGGCTCCAGGTGGACAGTCTTACGTCTGCCTGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140258207 290 - 143122389 CTGTGAAATGAGGACT-T---GGGGGGATTCATTTTGTGGACCACTGATTTCACAATCATTTAGCAGTTTCCA-GGGGAGAAAAGTGGCCTGTGTATTCAACAG----AGCTTGGAGAATAGAGACTGTGTAGGGATTTGCCCAGGGAGTGCAGTAGGGAGAGGTGCATCGCCAAGAAAGTCGGAGACTTC----------------------------------------TCCTTAGCAGGCTCATCGTTTCCA-AAGAGACAGAGATGCAGTCCTGAGTCAGCGCTCCGGCTTGCTGGGGGCACTGGCTCCAGGTGGACAGTCTTACATCTGCCTGGC i nomLeu3.chr5 C 0 M 822 s rheMac3.chr1 16968538 289 - 229590362 CTGTGAAATGACGATT-T---GGGGGGGTTCATTTTGTGGACCACTGATTTCACAATCATTTTGCAGTTTCTA-GGGGAGAAAAGTGACCTGCATATTCAACAAAC--AGCTTAGAGAATGGAGACTGTGTAGGGATTTGCCCAGGGAGTAGAGTAGGGAGAGGTGCATTGCCAAGAAAATCAGAGACTT-------------------------------------------GTTAACAGGCCCATCGTTTCCA-AAGAGATGGAGATGCAGTCCCGAGTCAGTGCTCCGGCTTGCTGGGGGCACTGGCTCTGGGTGGACAGTCTTACATCTGCCTGGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223731824 289 - 227556264 CTGTGAAATGACGATT-T---GGGGGGGTTCATTTTGTGGACCACTGATTTCACAATCATTTTGCAGTTTCTA-GGGGAGAAAAGTGACCTGCATATTCAACAAAC--AGCTTAGAGAATGGAGACTGTGTAGGGATTTGCCCAGGGAGTAGAGTAGGGAGAGGTGCATTGCCAAGAAAATCGGAGACTT-------------------------------------------GTTAACAGGCCCATCGTTTCCA-AAGAGATGGAGATGCAGTCCCGAGTCAGTGCTCCGGCTTGCTGGGGGCACTGGCTCCGGGTGGACAGTCTTACATCTGCCTGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16781967 289 - 220367699 CTGTGAAATGACGATT-T---gggggggTTCATTTTGTGGACCACTGATTTCACAATCATTTTGCAGTTTCTA-GGGGAGAAAAGTGACCTGCATATTCAACAAAC--AGCTTAGAGAATGGAGACTGTGTAGGGATTTGCCCAGGGAGTAGAGTAGGGAGAGGTGCATTGCCAAGAAAATCGGAGACTT-------------------------------------------GTTAACAGGCCCATCGTTTCCA-AAGAGATGGAGATGCAGTCCCGAGTCAGCGCTCCGGCTTGCTGGGGGCACTGGTTCCGGGCGGACAGTCTTATGTCTGCCTGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82579748 294 + 85787240 CTGTGAAATGAGGATT-TGGGGGGGGGGTTCATTTTGTGAACCACTGATTTCACAATCATTTTGCAGTTTCTA-GGGGAGAAAAGTGACCTGCGTATTCAACATACGGAGCTTAGAGAATGGAGACTGTGTAGGGATTTGCCCAGGGAGTAGAGTAGGGAGAGGTGCATCGCCAAGAAAATCGGAGACTT-------------------------------------------GTTAGCAGGCCCATCGTTTCCA-AAGAGATGGAGATGCAGTCCCGAGTCAGCGCTCCGGCTTGCTGGGGGCACTGGCTCCGGGTGGACAGTCTTACGTCTGCCTGGC i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36410487 324 + 80974532 TTTTGAAATAAGGATTCT---TTGGGAGTTCATGTTGTGGACCACT-ATTTCACAATCATTAAGCAGTTTCTA-GGGGAGAAGATCAATGTGTGTATTC---------ACTTTAGAGCGAAGCCTCCAGGCAGAGATTAACCCAGGAAGTGAAGTGGGGCAATGGGTATTGGGAAGAAAATCTGAGGTCTTGGAGAACTTGGAGGAGGACCTGGGCATTGCTATGCTGGGAGCACTGACATCCTTTTGGTTCTCAGAGGAGATGGACACGCAGCCGTGAATTA--GCTCCAGCTTGCAAGACACACTGATTCTAGATAAGTAGTCTCACATCTACTAGTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e calJac3.chr19 14260904 13 - 49578535 I a score=122720.000000 s hg38.chr1_KI270759v1_alt 250420 74 + 425601 aatgctggctatgctggctatgctatgACCTGCTTCCTCTGTGAAACAG-CTGCTGAACAAAAATGCCCAAATTT s panTro4.chr1 225005927 66 + 228333871 A---------ATGCTGGCTGTGCTATGAGCTGCTTCCTCTGTGAAACAGACTGCTGAACAGATATGCCCAGATTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226372660 65 - 229942017 A---------TTGCTGGCTATGCTATGACCTGCTTCCTCTGTGAAAGAG-CTGCTGAACAAAAATGCCCAAATTT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16968827 65 - 229590362 A---------ATGCTGGCTATGCTATGACCTGCTTCCTCTGTGAAACAG-CTGTTGAACAAAAATGTCCAAATTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223732113 65 - 227556264 A---------ATGCTGGCTATGCTATGACCTGCTTCCTCTGTGAAACAG-CTGTTGAACAAAAATGTCCAAATTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16782256 65 - 220367699 A---------ATGCTGGCTATGCTATGACCTACTTCCTCTGTGAAACAG-CTGTTGAACAAAAATGTCCAAATTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82580042 65 + 85787240 A---------ATGCTGGCTATGCTATGACCTGCTTCCTCTGTGAAACAG-CTGTTGAACAAAAATGTCCAAATTT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36410811 60 + 80974532 ---------TACGCTG-----GCCATGATCTCCTTCCTTCCTAGAAAAA-ATGTTGCCCAGAAATGCCTGGATTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e calJac3.chr19 14260904 13 - 49578535 I e nomLeu3.chr5 140258497 822 - 143122389 M a score=15939.000000 s hg38.chr1_KI270759v1_alt 250494 9 + 425601 TAGCACATC s panTro4.chr1 225005993 9 + 228333871 TAGCGCATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226372725 9 - 229942017 TAGCActtc i ponAbe2.chr1 C 0 I 16 s rheMac3.chr1 16968892 9 - 229590362 TAGCACATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223732178 9 - 227556264 TAGCACATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16782321 9 - 220367699 TAGCACAtc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82580107 9 + 85787240 TAGCACATC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e nomLeu3.chr5 140258497 822 - 143122389 M a score=4985.000000 s hg38.chr1_KI270759v1_alt 250503 4 + 425601 AATc s panTro4.chr1 225006002 4 + 228333871 AGTc i panTro4.chr1 C 0 C 0 s rheMac3.chr1 16968901 4 - 229590362 AATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223732187 4 - 227556264 AATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16782330 4 - 220367699 aatc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82580116 4 + 85787240 AATC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e nomLeu3.chr5 140258497 822 - 143122389 M e ponAbe2.chr1 226372734 16 - 229942017 I a score=14197.000000 s hg38.chr1_KI270759v1_alt 250507 9 + 425601 tcttcttct s panTro4.chr1 225006006 9 + 228333871 tcttcctcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226372750 9 - 229942017 tcttcttcc i ponAbe2.chr1 I 16 C 0 s rheMac3.chr1 16968905 9 - 229590362 TTttcttct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223732191 9 - 227556264 TTTTCTTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16782334 9 - 220367699 ttttcttct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82580120 9 + 85787240 TTTTCTTCT i chlSab2.chr25 C 0 I 37 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e nomLeu3.chr5 140258497 822 - 143122389 M a score=-1853.000000 s hg38.chr1_KI270759v1_alt 250516 2 + 425601 tc- s panTro4.chr1 225006015 2 + 228333871 tc- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226372759 2 - 229942017 tc- i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16968914 2 - 229590362 -tc i rheMac3.chr1 C 0 I 170 s macFas5.chr1 223732200 1 - 227556264 -T- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16782343 1 - 220367699 -t- i papAnu2.chr1 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e chlSab2.chr25 82580129 37 + 85787240 I e nomLeu3.chr5 140258497 822 - 143122389 M a score=7268.000000 s hg38.chr1_KI270759v1_alt 250518 19 + 425601 ctcctcctcctcttcttct s panTro4.chr1 225006017 19 + 228333871 ctcctcgtcttcttcctct i panTro4.chr1 C 0 I 428 s ponAbe2.chr1 226372761 19 - 229942017 ttcctcttcctcttcttct i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223732201 16 - 227556264 Ttccttctcgtcctcc--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16782344 16 - 220367699 ctccttctcatcctcc--- i papAnu2.chr1 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e rheMac3.chr1 16968916 170 - 229590362 I e chlSab2.chr25 82580129 37 + 85787240 I e nomLeu3.chr5 140258497 822 - 143122389 M a score=1759.000000 s hg38.chr1_KI270759v1_alt 250537 4 + 425601 tctt s ponAbe2.chr1 226372780 4 - 229942017 tctt i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223732217 4 - 227556264 tcct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16782360 4 - 220367699 tcct i papAnu2.chr1 C 0 I 3 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e rheMac3.chr1 16968916 170 - 229590362 I e chlSab2.chr25 82580129 37 + 85787240 I e nomLeu3.chr5 140258497 822 - 143122389 M e panTro4.chr1 225006036 428 + 228333871 I a score=1248.000000 s hg38.chr1_KI270759v1_alt 250541 9 + 425601 cttcctc-----ct s ponAbe2.chr1 226372784 14 - 229942017 cttcctcttcctct i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223732221 9 - 227556264 cctcctc-----ct i macFas5.chr1 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e rheMac3.chr1 16968916 170 - 229590362 I e chlSab2.chr25 82580129 37 + 85787240 I e papAnu2.chr1 16782364 3 - 220367699 I e nomLeu3.chr5 140258497 822 - 143122389 M e panTro4.chr1 225006036 428 + 228333871 I a score=7649.000000 s hg38.chr1_KI270759v1_alt 250550 140 + 425601 tcttcctccttc----ctccctcctcctcctcttcttcttcttcctcctcct--tcctccctcctcctcctccttcttcttcttcctccttcttcctccttc-ctccctcctc--ctcctcctccttcttcttcttcctccttcttctt s ponAbe2.chr1 226372798 148 - 229942017 tcttcctcttcctcttcttcctcttcctcttcttcctcttcttcctcctcctcctcctccc-cctcctcctccccctccccctcccctccccctcctcctcctcctcctcctcctctcctcctctttttccttctttctcctcctcctc i ponAbe2.chr1 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e rheMac3.chr1 16968916 170 - 229590362 I e chlSab2.chr25 82580129 37 + 85787240 I e papAnu2.chr1 16782364 3 - 220367699 I e macFas5.chr1 223732230 0 - 227556264 C e nomLeu3.chr5 140258497 822 - 143122389 M e panTro4.chr1 225006036 428 + 228333871 I a score=342.000000 s hg38.chr1_KI270759v1_alt 250690 5 + 425601 cttc-c s ponAbe2.chr1 226372946 6 - 229942017 ctcctc i ponAbe2.chr1 C 0 C 0 s papAnu2.chr1 16782367 5 - 220367699 cttc-c i papAnu2.chr1 I 3 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e rheMac3.chr1 16968916 170 - 229590362 I e chlSab2.chr25 82580129 37 + 85787240 I e macFas5.chr1 223732230 0 - 227556264 C e nomLeu3.chr5 140258497 822 - 143122389 M e panTro4.chr1 225006036 428 + 228333871 I a score=3164.000000 s hg38.chr1_KI270759v1_alt 250695 12 + 425601 ttctttcttctt s ponAbe2.chr1 226372952 12 - 229942017 ctttttcttctt i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223732230 8 - 227556264 ----tttttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16782372 11 - 220367699 -ttttttttttt i papAnu2.chr1 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e rheMac3.chr1 16968916 170 - 229590362 I e chlSab2.chr25 82580129 37 + 85787240 I e nomLeu3.chr5 140258497 822 - 143122389 M e panTro4.chr1 225006036 428 + 228333871 I a score=6250.000000 s hg38.chr1_KI270759v1_alt 250707 12 + 425601 tcttcttcttta s ponAbe2.chr1 226372964 12 - 229942017 ctttcttcttca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140259338 12 - 143122389 TCttttttgttg i nomLeu3.chr5 M 822 C 0 s macFas5.chr1 223732238 12 - 227556264 tttttttttttg i macFas5.chr1 C 0 I 4 s papAnu2.chr1 16782383 12 - 220367699 tttttttttttg i papAnu2.chr1 C 0 I 3 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e rheMac3.chr1 16968916 170 - 229590362 I e chlSab2.chr25 82580129 37 + 85787240 I e panTro4.chr1 225006036 428 + 228333871 I a score=707857.000000 s hg38.chr1_KI270759v1_alt 250719 419 + 425601 agaaagggtctgcttttgtcacccaggctggagtggagtggcgtgaacgaacacagctcactgcaggctcaacctccaaattcaagcgatcctctcaccttaggcccccaagtagctgggactaccagcatgcaccaccacgcctggg--taa-tttttgta--tttttttggtagagatggggttttgccatgttgcccaggctggtctcaaactcctgagttcggatgatttgccggccttggcctcccaaagtgctgggattacaggcatgagccactgcatctggTGTTTTTGttgttgt--------------------------------tgttgttttgagatggaggtctctgtatcatcaagaatggtctcaaactcctgggcttaagtgatcctcccacctcagcctctcaagtagctgagtttacaggtgcaagccaccatcccc s ponAbe2.chr1 226372976 414 - 229942017 agaaagggtctggctttgtcacccaggctggagtgcagtggcgt----gaacacagctcactgcaggctcaacctccaaattcaagcgatcctctcaccttaggcccccaagtagctgggactaccagcacgcgccaccacgcctggc--taattttttgta--tttttttagtagagacggggttttgccatgttgcccaggctggtcccaaactcctgagttcaaatgatttgccagccttggcctcccaaagtgctgggattacaggcatgagccactgcatctggcGGGGttttccttgt----------------------------------ttttttggagatggaggtctctgtatcatcaagactggtctcgaactcctgggctcaagtgatcctcccccctcaacctctcaagtagctgagcttacaggctcaagccgccatcccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140259350 445 - 143122389 agaaagtgtctggctttgtca-ccaggctggagtgcagtggtgt----gaacacagctcactgcaggctcaacctccaaattcaagcgatcctctcactttagccccctaagtagctgggactaccagcatgtgccaccacacctggc--taa-tttttgta--tttttttggtagagaccgggttttgccatgttgctcaggctggtcttaaactcctgagttcaaaccatttgcctgccttggcctcccaaagtgctgggattacagacatgaaccactgcatctggcATTTTTGTTTTTGTTTCGTTTTTAGTTAAG-TTTAGTTttttttttttttcttttgagatgaaagtctctatatcatcaagactggtctcaaactcctgggctcaagtgattctcccccctcaacctctcaagtagttgagcttacaggcgcaagccattgtgccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16969086 435 - 229590362 agaaagggtctggctttgtcacccagactggagtgcactggcgt----gaacacagctcaccgcaggctcaacgtccaaattcaagcgatcctctcaccttagccccccaggtagctgggactaccagcatgtgccaccacacctggc--caa-tttttgtatttttttttggtagagacggggttttgccatgttgctcaggctggtctcaaactcctgagatcaaaccatttgcctgccttggcctcccaaagtgctgagattacagacatgagccactgcacctggcATTTTTGTTTTTATTTTGTTTTTAATTAGG--------tttttttttttttttttgagatgaaagtcactatatcatcaagactggt------ctcctgggctcaagtgatcctcccacctcagcctctcaagtagctgagcttacaggcacaagccaccgtgccc i rheMac3.chr1 I 170 C 0 s macFas5.chr1 223732254 443 - 227556264 agaaagggtctggctttgtcacccagactggagtgcactggcgt----gaacacagctcaccgcaggctcaacgtccaaattcaagcgatcctctcaccttagccccccaggtagctgggactaccagcatgtgccaccacacctggc--taa-tttttgtatttttttttggtagagacggggttttgccatgttgctcaggctggtctcaaactcctgagctcaaaccatttgcctgccttggcctcccaaagtgctgagattacagacatgagccactgcacctggcATTTTTGTTTTTATTTTGTTTTTAATTAGGtttttttttttttttttttttttttgagatgaaagtcactatatcatcaagactggt------ctcctgggctcaagtgatcctcccacctcagcctctcaagtagctgagcttacaggcacaagccaccgtgccc i macFas5.chr1 I 4 C 0 s papAnu2.chr1 16782398 441 - 220367699 agaaagggtctggctttgtcacctagactggagtgcactggcgt----gaacACAGCTCACCGCAGGCTCAACGTCCaaattcaagcgatcctctcaccttagccccccaggtagctgggactaccagcatgtgccaccacacctgcc--taa-tttttgtatttttttttggtagagacggggttttgccatgttgctcaggctggtctcaaaatcctgagctcaaaccatttgcctgccttggcctcccaaagtgctgagattacagacatgagccactgcacctggcatttttgtttttgttttgtttttaattagg--------tttttttttttttttttgagatgaaagtCACTATATCATCAagactggtgtcgaactcctgggctcaagtgatcctcccacctcagcctctcaagtagctgagcttacaggcacaagccaccgtgccc i papAnu2.chr1 I 3 C 0 s chlSab2.chr25 82580166 443 + 85787240 agaaagggtctggctttgtcacccagactggagtgcactggcgt----gaacacagctcactgcaggctcaacgtccaaattcaagcgatcctctcaccttagccccccaggtagctgggactaccagtatgtgccaccacacctggcttttt-tttttttttttttttttggtagagacagggttttgccatgttgctcaggctggtctcaaactcctgagctcaaaccatttgcctgcctcggcctcccaaagtgctgagattacagacatgagccactgcacctggcATTTTTGTTTTTGTTTTGTTTTTAATTAGG--------tttttttttttttttttgagatgaaggtcactatatcatcaagactggtctcgaactcctgggctcaagtgatcctcccacctcagcctctcaagtagctgagcttacaggcacaagccaccgtgccc i chlSab2.chr25 I 37 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e panTro4.chr1 225006036 428 + 228333871 I a score=8148.000000 s hg38.chr1_KI270759v1_alt 251138 3 + 425601 agc s panTro4.chr1 225006464 3 + 228333871 AGC i panTro4.chr1 I 428 C 0 s ponAbe2.chr1 226373390 3 - 229942017 agc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140259795 3 - 143122389 agc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16969521 3 - 229590362 agc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223732697 3 - 227556264 agc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16782839 3 - 220367699 agc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82580609 3 + 85787240 agc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36410871 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I a score=698120.000000 s hg38.chr1_KI270759v1_alt 251141 267 + 425601 CAAGCACATTAATCTTTATGAAAATGTTTTGTTTCTGCCTTTCCCCACTCTTGCAATGGCTCACCACAGTCATCCCATTTTCCCAGCAGCGTGGAACTCACAGTCAGAAGGGCCCATTCTCCAAAATTAACCCCACCTGAGAGT---TACATTATGTA--ACACACTGGGAGTGGGGGACAAGGAACATCTGTCTCCATCTGTG-CCAGGTGCTAACTTCCTGTG-TCGCCCAGGAACACTCACCTAACACCTCCGAGTGCCTCCACAAAAGTG s panTro4.chr1 225006467 267 + 228333871 CAAGCACATTAATCTTTATGAAAATGTTTTGTTTCTGCCTTTCCCCACTCTTGCAATGGCTCACCACAGTCATCCCATTTTCCCAGCAGTGTGGAACTCACAGTCAGAAGGGCCCATTCTCCCAAATTAACCCCACCTGAGAGT---TACATTATGTA--ACACACTGGGAATGGGGGACAAGGAACATCTGTCTCCATCTGTG-CCAGGTGCTAACTTCCTGTG-TCGCCCAGGAACACTCACCTAACACCTCCGAGTGCCTCCACAAAAGTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226373393 268 - 229942017 CAAGCACATTAATCTTTATGAAAATGTTTTGTTTCTGCCTTTCCCCACTCTTGCAATGGTTCACCACAGTCATCCCATTTTCCCAGCAGCGTGGAACTCACAGTCAGAGGGGCCCATTCTCCCAAATTAACCCCACCTGAGAGT---TACATTATGTA--ACACACTGGGAATGGGGGATAAGGAACATCTGTCTCCATCTGTGCCCAGGTGCTAACTTCCTGTG-TCGCCCAGGAACACTCACCTAACACCTCCAAGTGCCTCCGCAAAAGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140259798 269 - 143122389 cAAGCACATTGATCTTTATGAAAATGTTTTGTTTCTGCCTTTCCCCACTCTTGCGATGGCTCACCACAGTCATCCCATTTTCCCAGCAGCGTGGAACTCACAGTCAGAAGGGCCCATTCTCCCAAATTAACCCCACCTGAGGGT---TACGTCATGTAACACACACTGGGAATGAGGGACAAGGAACATCTGTCTCCATCTGTG-CCATGTGCTGACTTCCTGTG-TCACCCAGGAACACTCACCTAACACCTCCAAGTGCCTCCGCAAAAGTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16969524 269 - 229590362 CAAGCACATTAACCTTTACGAAAATGTTTCATTTCTACCTTTCCCCACTCTTGCGATGGCTCACCACAGTCATCCCATTTTCCCAGCAGCGTGGAACTCACAGTCAGAAGGGCCCATTCTCCCAAATTAACCCCACCTGAGGGT---TACATCATGTaacacacactgggaatgagggacaaggaacatctgtctccatctgtg-ccatgtgctaacttcctgtg-tcacccaggaacactcacctaacacctctgagtgcctcCGCAGAAGTG i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223732700 269 - 227556264 CAAGCACATTAACCTTTACGAAAATGTTTCATTTCTACCTTTCCCCACTCTTGCGATGGCTCACCACAGTCATCCCATTTTCCCAGCAGCGTGGAACTCACAGTCAGAAGGGCCCATTCTCCCAAATTAACCCCACCTGAGGGT---TACATCATGTaacacacactgggaatgagggacaaggaacatctgtctccatctgtg-ccatgtgctaacttcctgtg-tcacccaggaacattcacctaacacctctgagtgcctcCGCAGAAGTG i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16782842 269 - 220367699 caagcacATTAACCTTtacaaaaatgtttcatttctacCTTTCCCCACTCTTGCGATGGCTCACCATAGTCATCCCATTTTCCCAGCAGCGTGGAACTCACAGTCAGAAGGGCCCATTCTCCCAAATTAACCCCACCTGAGGGT---TACATCATGTAACACACACTGGGAATGAGGGACAAGGAACATCTGTCTCCATCTGTG-CCATGTGCTAActtcctgtg-tcacccaggaaCACTCACCTAACACCTCTGAGTGCCTCCGCAAAAGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82580612 269 + 85787240 CAAGCACATTAACCTTTACAAAAACGTTTCATTTCTGCCTTTCCCCACTCTTGCGATGGCTCACCACAGTCATCTCATTTTCCCAGCAGCGTGGAACTCACAGTCAGAAGGGCCCATTCTCCCAAATTAACCCCACCCGAGGGT---TACATCATGTAACACACACTGGGAATGAGGGACAAGGAACATCTGTCTCCATCTGTG-CCATGTGCTAACTTCCTGTA-TCACCCAGGAACACTCACCTAACACCTCCGAGTGCCTCCGCAAAAGTG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36410871 214 + 80974532 CAGCCACATTAATCTTTATGAAAATG-TTCATTTCTCCCTTTATCCATTCCCACCATGGCTCACCACAGCCATCCTACTTCCCTAGCAGTGGGGAGCTCCTGGCCAGAACGA-ACAGGCTGCCAAGTTAGCCCT-CCTAAGATTGCATTCATTGTG----AAACACAGTGCATGGAGA------------TGGCCTCACTTATT-C-----ACAAACATTCTGAGCCCACACAGGAGCA----------------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e calJac3.chr19 14260904 13 - 49578535 I a score=316380.000000 s hg38.chr1_KI270759v1_alt 251408 254 + 425601 CCAGGCCATGTATGTGGGACACTTGCTCTGCAGTGTAAGCAAAA-ATGGGTGCAGTTTTA-AAAATATTGTAGAATTCTAGAA-CTTTCCAAATAAGTT-GGATAATATCAGCAG-TTGGTATTCATATAGGTTGACCTTCACTTGGCAGAACAGTCTGAACAGGTGCGTAGA-TTTTAAGTAGAC-TTGAATTTGAAGGCTAAGG--TCAT-CCAGA-TCTCTTTGCGGATGTGGAGCTGGAATGA------AGCCCTCCTGG-CTTTG-CC s panTro4.chr1 225006734 254 + 228333871 CCAGGCCATGTATGTGGGACACTTGCTCTGCAGTGTAAGCAAAA-ATGGGTGCAGTTTTA-AAAATATTGTAGAATTCTAGAA-CTTTCCAAATAAGTT-GGATAATATCAGCAG-TTGGTATTCATATAGGTTGACCTTCACTTGGCAGAACAGTCTGAACAGGTGCGTAGA-TTTTGAGTAGAC-TTGAATTTGAAGGCTAAGG--TCAT-CCAGA-TCTCTTTGCGGATGTGGAGCTGGAATGA------AGCCCTCCTGG-CTTTG-CC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226373661 264 - 229942017 CCAGGCCATGTATGTGGGACACTTGCTCTGCAATGTAAGCAAAA-ATGGGTGCAGTTTTA-AAAAAATTATAGATTTCTAGAATCTTTCCAAATAAGTTGGGATAATATCAGCAGTTTGGTATTCATATAGGTTAACCTTCACTTGGCAGAACAGTCTGAACAGGTGCGTAGATTTTTAAGTAGACTTTGAATTTGAAGGCTAAGG-TTCATCCCAGATTCCCTTTGCGGATGTGGAGCTGGAATGA------AGACCTCCTGGTCTTTGCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140260067 254 - 143122389 CCAGGCTGTGTATGTGGGACACTTGCTCTGCAATGCAAGCAAAA-ACAGGTGCAGTTTTAGAAAAAATTATAGATTTCTAGAA-CTTTGGAAATAAGTT-GGATAATAGCAGCAG-TTGGTATATATATAGCTTAACCTTCACTTGGCAGAACAGTCTGAAC-GGTGCGTAGA-TTTTAAGTAGAC-TTGAATCTGAAGGCTGAGG--TCAT-CCAGA-TCTGTCTGCGGATGTGGAGCTGGAATGA------AGCCCTCCTGG-CTTTG-CC i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16783111 252 - 220367699 CCAGGCCATGTATGTGGGACACTTGCTCTGCAATTTAAGCAAAA-AC-GGTGcagttttt-aaacaattataGATTTCTAGAA-CATTCCAAATAAGTT-GGATAATATCAGCAG-CTGGTATTCATATAGGTTAACCTTCACTTAGCAGAACAGTCCGAATGGGTGCGTAGA-TTTTAAGTAGAC-TTGAATTGGAAAGCTAAGG--CCAT-CCAGC-TCTCTTTGCGCCCATGGAGCTGCAACGA------AG-CCTCCTGG-CTTCG-CC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82580881 245 + 85787240 CCAGGCCATGTATGTGGGACACTTGCTCTGCAATTTAAGCAAAA-AC-GGTGCAGTTTTT-AAACAATTGTAGATTTCTAGAA-CATTCCAAATAAGTT-GGATAATATCAGCAG-CTGGTATTCA------TTAA-CTTCACTTAGCAGAACAGTCCGAATGGGTGCGTAGA-TTTTAAGTAGAC-TTGAATTGGAAGGCTAAGG--CCAT-CCAGA-TCTCTTTGCGCCTGTGGAGCTGCAACAA------AG-CCTCCTGG-CTTTG-CC i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36411085 256 + 80974532 CCAGGCACTGTCGGGGAGACACCTGCTGTGCAATGTAAGCAAAACAGACATGGGATTTTT-TTTTAATTTTAGATTTCTAGAA-TTTTCCAGATCACTT-GAATAATATCAGTAA-TTGGTATTCATATGTATTCATCTTCAGTCAGCGGAAAAG-CTGAACAGGTTCATAGA-TTTTAAGTAGGA------CATGAAGTCTGAGGAATAAT-GCAGA-TCTCTTTCAAGAGGGGTTGCCAGAGGCAGCTCTCAG-CCTCTTTG-CTTTT-CC i canFam3.chr7 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e calJac3.chr19 14260904 13 - 49578535 I e rheMac3.chr1 16969793 1 - 229590362 I e macFas5.chr1 223732969 1 - 227556264 I a score=481078.000000 s hg38.chr1_KI270759v1_alt 251662 405 + 425601 TCCTCTGCCGTCGTCGCAGCC-GGCAGGtcccagctctcctc-tttcaattgctgtgtgaccctacggaagatattcagtttttctggg-----cctgaacttctttatctgcaaaacaggaaaacgaatcatacttcctcagagggtaattgtgaggctccaataaCTGTGCTGGAGAAAGTGGGGTATGAGGCCCGGTTTGGGGCTGTGGGAGCACCTCTTCCTTCTGTTGGTCCTAGGAGCTCAGCGCTTGGTGGGATGTTCCAGACCAGGAGAGGCTGGGACTAAAATTCCAGAGTGATCTATGGGTGCAGAAGCTTCAGACGCCTGT-TCAAGAGATGGGTATCAGGTGAGGTGAGTCCATATTTAGGTCTC-CAGCTAGGATTTAAACCTATAAGGGGAAGAAGCACA s panTro4.chr1 225006988 405 + 228333871 TCCTCTGCCATCATCGCAGCC-GGCAGGtcccagctctcctc-tttcaatcgctgtgtgaccctacggaagatattcagtttttctggg-----cctgaacttctttatctgcaaaacaggaaaacgaatcatacttcctcagagggtaattgtgaggctccaataaCTGTGCTGGAGAAAGTGGGGTATGAGGCCCGGTTTGGGGCTGTGGGAGCACCTCTTCCTTCTGTTGGTCCTAGGAGCTCAGCGCTTGGTGGGATGTTCCAGACCAGGAGAGGCTGGGACTAAAATTCCAGGGTGACCTATGGGTGCAGAAGCTTTAGACGCCTGT-TCAAGAGACGGGTATCAGGTGAGGTGAGTCCATATTTAGGTCTC-CAGCTAGGATTTAAACCTATAAGGGGAAGAAGCACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226373925 409 - 229942017 TCCTCTGCCATCATCGCAGCCGGGCAGGtcccagctctcctcgtttcagttgctatgtgaccctatggaagatattcagtttttctggg-----cctgaagttctttatctgcaaaacaggaaaacgaatcatacttcctcagaaggtaattttgaggCTCTCATGACTGTGCTGGAGAAAGTAGGGTATGAGGCCTGGTTTGGGGCTGTGGGAGCACCTCTTCCTTCCGTCAGTCCTGGGAGCTCAGCACTTGGTGGGATGTTCCAGACCAGGAGACGCTGGGACTAAAATTCCGCGGTGATCTATGGGTGCAGAAGCTTTAGACACCTGTCTCAAGAGACAGGTATCAGGTGAGGTGAGTCCATATTTAGGTCTCACAGCTAGGATTTAAACCTATAAGGGGAAGAAGCACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140260321 405 - 143122389 TCCTCTGCCATCGTCGCACCC-GGCAGGtcccagctctcctc-tttcaattgctgtgtgaccctacggaagatactcagtttttctggg-----cctgaagttctttatctgcaaaacaggaaaacgcatcatatttcctcagagggtaattgtgaggctccaataaCTGTGCTGGAGAAAGTGGGGTATGAGTCCCGGTTTGGGGCTGTGGGAGCACCTCTTCCTTCTGTCAGTCCTGGGAGCTCAGCGCTTGGTGGGATGTTCCAGACCAGGAGAGGCTGAGACTAAAATTCCAGGGTGATCTATGGGTGCAGAAGCTTTAGATGCCTGT-TCAAGAGATGGGTAACAGGTGAGGTGAGTCCACATTTAGGTCTC-CAGCTAGGATTTAAACCTATAAGGGAAAGAAGCACA i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16783363 406 - 220367699 TCCTCTGCCATCATCGCAGCT--GCAGGCCCCAGCTCTCCTC-TTTCACTTGCTGTGTGACGCTAGGgaagatattctgtttttctgggcCTCACCTGAAGTTCTTTATCTGCAAAACAGGAAAATGAATCCTACTTCCTCAGAGGGTAATTGTGAGGCTCCCATGACTG---TGGAGAAAGTGAGGTATGAGGCCTGGTTTGGGGCTGTGGGAGCACCTCTTCCTTCTGTCAGTCCTGGGAGCTCAGCGCTTGGTGGGATATTCCAGACCAGGAGAGGCTGGGACTAAAATTCCTGTGTGATCTACGGGTGCAGAAGCTTTCGATATCTGT-TCAGGAGATGGGTAACAGGTGGGGTGAGTCCATATTTAGGTCTC-CAGCTAGGATTTAAACCTATAAGTGGAAGAAGCACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82581126 381 + 85787240 TCCTCTGCCATCATCGCAGCT--GCAGGCcccagctctcctc-tttcacttgctgtgtgacgctagggaagatattcagtttttctgggcctcacctgaagttctttatctgcaaaacaggaaaatgaatcctacttcctcagagggtaattgtgaggctcccatgaCTG---TGGAGAAAGTGAGGTATGAGGCCTGGTTTGGGGCTGTGGGAGCACCTCTTCCTTCTGTCGGTCCTGGGAGCTTAGCGCTTGGTGGGAT-------------------------TAAAATTCCTGTGTGATCTTTGCGTGCAGAAGCTTTAGATGTCTGT-TCAAGAGATGGGTAACAGGTAAGGTGAGTCCATATTTAGGTCTC-CAGCTAGGATTTAAACCTGTAAGTGGAAGAAGCACA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36411341 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I e rheMac3.chr1 16969793 1 - 229590362 I e macFas5.chr1 223732969 1 - 227556264 I a score=309389.000000 s hg38.chr1_KI270759v1_alt 252067 126 + 425601 GGTGAGCTACAGTAATTTTGGCTAAAGGTCCAAACTGAGGCCAATCTCAGGGCATGTCCCTCTAACTAGAGGTAAGGCATTTAGTCAACAGCCCTCCAAGCTCAAATAGGC----AGAGGGTAGAACTGA s panTro4.chr1 225007393 126 + 228333871 GGTGAGCTACAGTAATTTTGGCTAAAGGTCCAAACTGAGGCCAATCTCAGGGCATGTCCCTCTAACTAGAGGTTAGGCATTTAGTCAACAGCCCTCCAAGCTCAAATAGGC----AGAGGGTAGAACTGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226374334 126 - 229942017 GGTGAGCTACAGTAATTTTGGCTAAAGGTCCAAATTGAGGCCAATCTCAGGGCATGTCCCTCTAACTAGAGGTAAGGCATTTAGTCAACAGCCCTCCAAGCTCAAATAGGC----AGAGGGTAGAACTGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140260726 126 - 143122389 GGTGAGCTACAGTAATTTTGGCTAAAGGTCCAAATTGAGGCCAATCTCAGGGCATGTCCCTCTCACTAGAGGTAAGGCATTTAGTCAACAGCCCTCCAAGCTCAAATAGGC----GGAGGGTAGAATTGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16969794 130 - 229590362 GGTGAGCTACAGTAATTTTGGCTAAAGGTCCAAATTGAGGCCAGTCTCAGGGAATGTCCATCTAACTAGAGGTAAGGCATTTAGTCAACCACCCTCCAAGCTCAAACAGGCAGAGAGAGGGTAGAATTGA i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223732970 126 - 227556264 GGTGAGCTACAGTAATTTTGGCTAAAGGTCCAAATTGAGGCCAGTCTCAGGGAATGTCCATCTAACTAGAGGTAAGGCATTTAGTCAACCACCCTCCAAGCTCAAACAGGC----AGAGGGTAGAATTGA i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16783769 126 - 220367699 GGTGAGCTACAGTAATTTTGGCTAAAGGTCCAAATTGAGGCCAATCTCAGGGAATGTCCATCTAACTAGAGGTAAGGCATTTAGTCAACCACCCTCCAAGCTCAAACAGGC----AGAGGGTAGAATTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82581507 126 + 85787240 GGTGAGCTACAGTAATTTTGGCTAAAGGTCCAAATTGAGGCCAATCTCAGGGAATGTCCATCTAACTAGAGGTAAGGCATTTAGTCAACCACCCTCCAAGCTCAAATAGGC----AGAGGGTAGAATTGA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36411341 0 + 80974532 C e calJac3.chr19 14260904 13 - 49578535 I a score=923203.000000 s hg38.chr1_KI270759v1_alt 252193 324 + 425601 GGGGGAATAGCAGCTGTTACTAGGAGGCTGGTCACTGGCAACCTTGGGTTTCAGGAGCGAGAAATCCATCC-TGGATACTGCGAACGCCCTTGATTCTTAGAAAAGTAGGGTCCTGGCATCAAAGCTGGAGCAGTATGGAACGGATGACTGCTTAGACACAGGGCCAGTGGGTGATCAACTACAGCCTCGTAGA-TTTCTCTTTGGAGGACTGGAGTGACTCCCAGG------------CTCAGTA-GGGGACTCTGTAGGGGACTGAGCTTGGAGAAGCCCACGGCCACCCTGCCTCCATTCCAAACAAGATTATTCACTCCACTCCT--GTTTAGCTGG s panTro4.chr1 225007519 324 + 228333871 GGGGGAATAGCAGCTGTTACTAGGAGGCTGGTCACTGGCAACCTTGGGTTTCAGGAGCAAGAAATCCATCC-TGGATACTGCGAACGCCCTTGATTCTTAGAAAAGTAGGGTCCTGGCATCAAAGCTGGAGCAGTATGGAACGGATGACTGCTTAGACACAGGGCCAGTGGGTGATCAACTACAGCCTCGTAGA-TTTCTCTTTGGAGGACTGGAGTGACTCCCAGG------------CTCAGTA-GGGGACTCTGTAGGGGACTGAGCTTGGAGAAGCCCACGGCCACCCTGCCTCCATTCCAAACAAGATTATTCACTCCACTCCT--GTTTAGCTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226374460 329 - 229942017 GGGGGAATAGCAGCTGTTACTAGGAGGCTGGTCACTGGCACCCTTGGGTTTCAGGAGCAAGAAATCCATCCTTGGATACTGTGAAGGCCCTTGATTCTTAGAAAAGTAGGGTCCTGGCGTCAGAGCTGGAGCAGCATGGAACAGATGACCGCTTAGACACAGGGCCAGTGAGTGATCAGCTGCAGCCTCGTAGGTTTTCTCTTTGGAGGACTGGAGTGACTCCCAGG------------CTTAGTATGGGGACTCAGTAGGGGACTGAGCTTGGAGAAGCCCACGGCCACCCTGCCTCCATTCCAACCAAGATTATTCACTCCACTCCCCGTTTTAGCTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140260852 324 - 143122389 GGGGGAATAGCAGCTGTTACTAGGAGGCTGGTCACTGGCAACCTTGGGTGTCAGGAGCAAGAAATCCATCC-TGGATACTGTGAAGGCCCTTGATTCTTAGAAAAGTAGGATCCTGGCGTCAGAGCTGGAGCAGCATGGAACGGATGACTGCTTAGACACAGGGCCAGTGAGTGATCAGCTGCAGCCTCGTAGG-TTTCTCTTTGGAGGACTGGAGTGACTCCCAGG------------CTCAGCA-GGGGACTCAGTATGGGACTGAGCTTGGAGAAGGCCACGGCCACACTGCCTCCATTCCAACCACGATTATTCACTCCACTCCC--GTTTAGCTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16969924 336 - 229590362 GGGGGAATGGCCGCGGTTACTAGGAGGCTGGTCACTGGCAACCTGGGGTTTCAGGAGCAAGAAATCCATCC-TGGATACTGCGAAGGCCCTTGATTCTTAGAAAAGTAGGGTCCTGGCGTCAGAGCTGGAGCAGCATGAAACAGATGACAGCTGAGACACAGGGCCAGTGGGTGATCAACTGCAGCCTCGTAGG-TTTCTCTTTAGAGGACTGGAGTGACTCCCAGGctcagtagaggactcagta-ggggactcagtagaggactGAGCCTGGAGAAGCCCACGGCCACCCTGCCTCCATTCCAACCAAGATTATTCACTCCACTCCT--GTTTAGCTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223733096 336 - 227556264 GGGGGAATGGCAGCGGTTACTAGGAGGCTGGTCACTGGCAACCTGGGGTTTCAGGAGCAAGAAATCCATCC-TGGATACTGCGAAGGCCCTTGATTCTTAGAAAAGTAGGGTCCTGGCGTCAGAGCTGGAGCAGCATGAAACAGATGACAGCTGAGACACAGGGCCAGTGGGTGATCAACTGCAGCCTCGTAGG-TTTCTCTTTAGAGGACTGGAGTGACTCCCAGGctcagtagaggactcagta-ggggactcagtagaggactGAGCCTGGAGAAGCCCACGGCCACCCTGCCTCCATTCCAACCAAGATTATTCACTCCACTCCT--GTTTAGCTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16783895 336 - 220367699 GGGGGAATGGCAGCGGTTACTAGGAGGCTGGTCACTGGCAACCTGGGGTTTCAGGAGCAAGAAATCCATCC-TGGATACTGCGAAGGCCCTTGATTCTTAGAAAAGTAGGGTCCTGGCGTCAGAGCTGGAGCAGCATGAAACAGATGACAGCTGAGACACAGGGCCAGTGGGTGATCAACTGCAGCCTCGTAGG-TTTCTCTTTAGAGGACTGGAGTGACTCCCAGGCAcagtagaggactcagta-ggggactcagtagaggactGAGCCTGGAGAAGCCCACGGCCACCCTGCCTCCATTCCAATCAAGATTATTCACTCCACTCCT--GTGTAGCTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82581633 324 + 85787240 GGGAGAATGGCAGCGGTTACTAGGAGGCTGGTCACTGGCAACCTGGGCTTTCAGGAGCAAGAAATCCATCC-TGGATACTGCGAAGGCCCTTGATTCTTAGAAAAGTAGGGTCCTGGCGTCAGAGCTGGAGCAGCATGAAACAGATGACAGCTGAGACACAGGGCCAGTGGGTGATCAACTGCAGCCTTGTAGG-TTTCTCTTTGGAGGACTGGAGTGACTCCCAGG------------CTCAGTA-GGGGACTCAGTAGAGGACTGAGCCTGGAGACGCCCACGGCCACCCTGCCTCCATTCCAACCAAGATTATTCACTCCACTCCT--ATTTAGCTGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14260917 290 - 49578535 GAGGGGACAGCAGCTGTCACCTGGAGGCTGGTCACTGGCAGCCTTCTGTTTCAGGAGCAGGAACTCCATCC-TGGATACTGAAAAGACTCTTGATCCTTAGAAAAACAGGGTCCCGGCATCAGAGCTGCAGTGGCCTGGAACAGATGACTGCTGAGACACAGGGCCAGTGGCT----------------------GTTCTCTTTGGAGGACTGGAGTGACTCCTGGA------------CTCAGTA-GG------------AGACTGAGCCTGGATAAGCCCACGGACACCCTTCCTCTGTTCCAGCCGAGATTATTCAC-CCACTCCT--GTCTAGCTGG i calJac3.chr19 I 13 I 263 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36411341 0 + 80974532 C a score=543194.000000 s hg38.chr1_KI270759v1_alt 252517 215 + 425601 TCACATGGCTCCCCCA-TTCCTTGCTCTCCA-TTGCCCTTAGT--CCAAAGT-CCAAATTC------------------------------CCCAGCCCAAGGCTGCAGGGGGC---TGGctccct--ggcct-ctagttcctg---cttctctcg-cctgcccc--cttgactccagtgagtagtttttggtgctgcaaagaggacac-actttctctcaccttc-----gggcctttgacctgcccgggcagggccctcccc-atct s panTro4.chr1 225007843 211 + 228333871 TCACATGGCTCCCCCA-TTCCTTGCTCTCCA-TTGCCCTTAGT--CCAAAGT-CCAAATTC------------------------------CCCAGCCCAAGGCTGCAGGGGGc---t----ccct--ggcct-ctagttcctg---cttctctcg-cctgcccc--cttgactccagtgagtagtttttggtgctgcaaagaggacac-actttctctcaccttc-----gggcctttgacctgcccgggcagggccctcccc-atct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226374789 231 - 229942017 TCACATGGCTCCCGTATTTCCTTGCTCTCCATTTGCACTCAGTCCCCAAAGTGCCAAATTC------------------------------CCCAGCCCAGGGCTGCAGAGGGC---T----CCCTTGGGCCTGCTAGTCCCTTGGCTTTCTCTCGCCCTGCCCCCGCTTGACTCCAGTGAGTGGTTTTTGGTGCTGCAAAGAGGACAC-ACTTTCTCTCACCTTTTGCGAGGCGCTTTGACCTGCCTGGGCAGTGCCCTCCCCGATCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140261176 210 - 143122389 TCACATGGCTCCCCCA-GTCCTTGCTCTCCA-TTGCCCTCAGT--GCAAAGT-CCAGATTC------------------------------CCCAGCCCAGGGCTGCAGGGGGC---T----CCCT--GGcct-ctagtccccg---cttctctcg-cctgcccc--cttcaccccattgagtgg-ttttggtgctgcaaagaggacac-actttctctcaccttc-----gggcctttgatctgcctgggcagtgccctcccc-atct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16970260 215 - 229590362 TCACATGGCTCCCCCA-TTCCTTGCTCTCCA-TTGCCCTCAGT--CCAAAGT-CCAAATTCCCC---------------------------CCCTGCCCAGGGCTGCAGGGAGc---t----ccct--ggcct-ctagtccatg---cttctctcg-cctgcccc--cttgacttcagtgagtagtttttggtgctgcaaagaggacacaactctctcccaccttc-----aggcctttgacctgcctgggcagtgccctcccc-atct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223733432 205 - 227556264 TCACATGGCTCCCCCA-TTCCTTGCTCTCCA-TTGCCCTCAGT--CCGAAGT-CCAAATTCCCc---------------------------ccctgccca----------gagc---t----ccct--ggcct-ctagtccatg---cttctctcg-cctgcccc--cttgacttcagtgagtagtttttggtgctgcaaagaggacacaactctctcccaccttc-----aggcctttgacctgcctgggcagtgccctcccc-atct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16784231 224 - 220367699 TCACATGGCTCCCCCA-TTCCTTGCTCTCCA-TTGCCCTCAGT--CCAAAGT-CCAaattccccccccccccg------------------ccctgCCCAGGGCTGCAGGGAGC---T----CCCT--GGCCT-CTAGTCCATG---CTTCTCTCG-CCTGCCCC--CTTGACTTCAGTGAGTAGTTTTTGGTGCTGCAAAGAGGACACAACTCTCTCCCACCTTC-----AGGCCTTTGACCTGCCTGGGCAGTGCCCTCCCG-ATCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82581957 222 + 85787240 TCACATGGCTCCCCCA-TTCCTTGCTCTCCA-TTGCCCTCAGT--CCAAAGT-CCAAATTCCACCCCCCAC--------------------CCCCGCCCAGGGCTGCAGGGAGc---t----ccct--ggcct-ctagtctatg---cttctctcg-cctgcccc--cttgacttcagtgagtagtttttggcgctgcaaagaggacacaactctctcccaccttc-----aggcctttgacctgcctgggcagtgccctcccc-atct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14261470 242 - 49578535 TCATATGGCTCCTCCA-TTTCTTGCTCTCCA-TTGCCCTCAGT--CCAGAAT-CCAAATTCCACTGCCCAAGGCTACAGGAATCCAAATTCCACTGCCCAAGGCTACAGGGGGCCATt----ccct--ggcct-ctagtcccct---cttctcttg-cttgtccc--cttgactccagtgagtgg-tttcagtgccg-aaagaggacac-actttctcttaccttt-----gggcctgtgacccgcctgggcactgctcttccc-atct i calJac3.chr19 I 263 C 0 e mm10.chr1 178833621 842 + 195471971 I e canFam3.chr7 36411341 0 + 80974532 C a score=451642.000000 s hg38.chr1_KI270759v1_alt 252732 157 + 425601 tcctcctttgctctgaattcatc---cttcttcttcaagctttaatttggatgttatcccttcaccccgcttccccaaggaagttccct-cctgcccctgaggcctctt-gccatgc--tgggctctaagtg-----------ggcatttatttctctgtGCAGAGTTTGTCCTT s panTro4.chr1 225008054 157 + 228333871 tcctcctttgctctgaattcatc---cttcttcttcaagctttaatttggatgttatcccttcaccccgcttccccaacgaagttccct-cctgcccctgaggcctctt-gccatgc--tgggctctaagtg-----------ggcatttatttctctgtGCAGAGCTTGCCCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226375020 158 - 229942017 TCCTCCTTTGCTCTGAATTCATC---CTTCTTCTTCAAGCTTTAATTTGGATGTTATCCCTTCACCCCACTTCCCCAAGGAAGTTCCCT-CCCTGCCCCGAGGCCTCTTGGCCATGC--TGGGCTCTAAGTG-----------GGCATTGATTTCTCTGTGCAGAGTTTGTCCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140261386 154 - 143122389 tcctcctttgctctgaattcatc------cttcttcaagctttaatgtggatgttatcccttcACCCCACTGCCCCACGGAAGCTCCCT-CCCGCCCCTGAGGCCTCTT-GCCATGC--TGGGCTCTAAGTG-----------AGCCTTGACTTCTCTGTGTGGAGTTTGTCCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16970475 157 - 229590362 tcctcctttgctctgaattcatc---cttcttcttcaagctttaatttcgatgtttttccttcaccccacttccccaaggatgttccct-cctgcccctgaggcctctt-gcgctgg--tgggttctaagtg-----------ggcattgatttctctgtgtagagtttgtcctt i rheMac3.chr1 C 0 I 14 s macFas5.chr1 223733637 157 - 227556264 tcctcctttgctatgaattcatc---cttcttcttcaagctttaatttcgatatttttccttcaCCCCACTTCCCCAAGGACGTTCCCT-CCTGCCCCTGAGGCCTCTT-GCGCTGC--TGGGTTCTAAGTG-----------GGCATTGATTTCTCTGTGTAGAGTTTGTCCTT i macFas5.chr1 C 0 I 14 s papAnu2.chr1 16784455 157 - 220367699 TCCTCCTTTGCTCTGAATTCATC---CTTCTTCTTCAAGCTTTAATTTCGATGTTTTTCCTTCACCCCACTTCCCCAAGGGCGTTCCCT-CCCGCCCCTGAGGCCTCTT-GCGCTGC--TGGGTTCTACGTG-----------GGCATTGATTTCTCTGTGTGGAGTTTGTCCTT i papAnu2.chr1 C 0 I 14 s chlSab2.chr25 82582179 157 + 85787240 tcctcctttgctctgaattcatc---cttcttcttcaagctttaatttcgatgtttttccttcaCCCCACTTCCCCAAGGACGTTCCCT-CCCACCCCTGAGGCCTCTT-GTGCTGC--TGGGTTCTAAGTG-----------GGCATTGATTTCTCTGTGTGGAGTTTGTCCTT i chlSab2.chr25 C 0 I 34 s calJac3.chr19 14261712 156 - 49578535 tcctccttagctctgaattcatc---cttcttcttcaagctgtaatttgcatgtgatcccttcatccaactttcccAAGGAAGTTCCCT-TGAGCTCCTAAGGCCACCT-GCCATGC--CAAGCTCTAACTG-----------GGCATT-AGTTCTCTGCGTGGAGTTTGTCCGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178834463 170 + 195471971 tCTTCTTTGCCTCTTAATGCATCGCAGTTCCTCTCCAAGCTTCAGCTCGGGTGTCACCTCCTTCCCCAA----CCTAAAGAAGTTCCCCACAAGTCCCTGTAGTCTCTT-GTGTTCCATTGCACCCTGACCTAAAACTTCTACAGCATTTCTTTTAGTCCCCTGAATTTGTCTTC i mm10.chr1 I 842 C 0 e canFam3.chr7 36411341 0 + 80974532 C a score=7766.000000 s hg38.chr1_KI270759v1_alt 252889 3 + 425601 CTT s panTro4.chr1 225008211 3 + 228333871 CTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226375178 3 - 229942017 CTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140261540 3 - 143122389 CTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16970646 3 - 229590362 ctc i rheMac3.chr1 I 14 I 17 s macFas5.chr1 223733808 3 - 227556264 CTC i macFas5.chr1 I 14 I 17 s papAnu2.chr1 16784626 3 - 220367699 CTC i papAnu2.chr1 I 14 I 17 s calJac3.chr19 14261868 3 - 49578535 CTT i calJac3.chr19 C 0 I 17 s mm10.chr1 178834633 3 + 195471971 CTT i mm10.chr1 C 0 C 0 e canFam3.chr7 36411341 0 + 80974532 C e chlSab2.chr25 82582336 34 + 85787240 I a score=763210.000000 s hg38.chr1_KI270759v1_alt 252892 270 + 425601 ----------------------------TGAACCAGG------------------------------TCCCTCCTGGACAAGGAA--GGTG-CTAGATACATGTTTGTCTAGCCACAGGGATCAGAGCTCAGAAGGTTGCGGGGACAGG--------------GCATCCTGCCTGCCCTCTCTGAATGTTCACTTTGAGTTACTTC--AGTTACTCTTTACCTGG---ACAACATAACGT----CGGGGAAAACTCATTTATTTGCAAAAGGCAAAATAC-ATG-ACACTGTTTCACTCAGAAGCC-CCTCAGACCCAGCATCTCGCCAACC-TTTGGGCTTAAGAAGTGGTGAAAAG s panTro4.chr1 225008214 270 + 228333871 ----------------------------TGAACCAGG------------------------------TCCCTCCTGGACGAGGAA--GGTG-CTAGATACATGTTTGTCTAGCCACAGGGATCAGAGCTCAGAAGGTTGCGGGGACGGG--------------GCATCCTGCCTGCCCTCTCTGAACGTTCACTTTGAGTTACTTC--AGTTACTCTTTACCTGG---ACAACATAATGT----CGGGGAAAACTCATTTATTTGCAAAAGGCAAAATAC-ATG-ACACTGTTTCACTCGGAAGCC-CCTCAGACCCAGCATCTCGCCAACC-TTTGGGCTTAAGAAGTGGTGAAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226375181 275 - 229942017 ----------------------------TGAACCAGG------------------------------TCCCTCCTGGACGATGGAATGGTGCCTAGATACACGTTTGTCTAGCCACAGGGATCAGAGCTCAGAAGGTTGTGGGGACAGG--------------GCATCCTGCCTGCCCTCTCTGAACATTCACTTTGAGTCACTTC--AGTTACTCTTTACCTGG---ACAACATAATGT----CGGGGAAAACTCATTTATTTGCAAAAGGCAAAATACTATG-ACACTGTTTCACTCGGAAGCC-CCTCAGACCCAGCATCTCGCCAACCTTTTGGGCTTAAGAAGTGGTGAAAAg i ponAbe2.chr1 C 0 I 923 s nomLeu3.chr5 140261543 271 - 143122389 ----------------------------TGAAGCAGG------------------------------TCCCTCCTGGACGATGGAA-GGTG-CTAGATAAATGTTTGTCTAGCCACAGCGATCAGAGCTCAGAAGGTTGCGGGGACAGG--------------GCATCCTGCCTGCCCTCTCTGAACGTTCACTTTGAGTCACTTC--AGTTATTCTTTACCTGG---ACAACATAATGT----CGGGGAAAACCCATGTATTTGCAGAAGGCAAAATAC-ATG-ACACTGTTTCACTCGGAAGCC-CCTCAGACCCAGCATCTTGCCAACC-TCTGGGCGTAAGAAGTGGTGAAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16970666 286 - 229590362 ----------------------------tgaaccagg------------------------------tccctcctggatgatggaa-ggtg-ctagatacatgtttgtCTAGCCACAGGGATCAGAGCTCAGAAGGTTGCAGGGATAGGGAGAGCCCACTGTGGCGTCCTGCCTGCCCTCTCTGAACGTTCACTCTGAGTCACTTC--AGTTACTCTTTACCTGGACAACAACATAATGT----CGGGGAAAACTCATTTATTTGCAAAAGGCAAAATAC-ATG-ACAC--TTTCACTCGGAAGCC-CCTCAGACCCAGCGTCTCGTCAACC-TCCAGGCTTAAGAAGTGGTGAAAAG i rheMac3.chr1 I 17 C 0 s macFas5.chr1 223733828 288 - 227556264 ----------------------------TGAACCAGG------------------------------TCCCTCCTGGATGATGGAA-GGTG-CTAGATACATGTTTGTCTAGCCACAGGGATCAGAGCTCAGAAGGTTGCAGGGATAGGGAGAGCCCACTGTGGCGTCCTGCCTGCCCTCTCTGAACGTTCACTCTGAGTCACTTC--AGTTACTCTTTACCTGGACAACAACATAATGT----CGGGGAAAACTCATTTATTTGCAAAAGGCAAAATAC-ATG-ACACTGTTTCACTCGGAAGCC-CCTCAGACCCAGCGTCTCGTCAACC-TCCAGGCTTAAGAAGTGGTGAAAAG i macFas5.chr1 I 17 C 0 s papAnu2.chr1 16784646 288 - 220367699 ----------------------------TGAACCAGG------------------------------TCCCTCCTGGATGATGGAA-GGTG-CTAGATACATGTTTGTCTAGCCACAGGGATCAGAGCTCAGAAGGTTGCAGGGATAGGGAGAGCCCACTGTGGCGTCCTGCCTGCCCTCTCTGAACGTTCACTCTGAGTCACTTC--AGTTACTCTTTACCTGGACAACAACATAATGT----CGGGGAAAACTCATTTATTTGCAAAAGGCAAAATAC-ATG-ACACTGTTTCACTCGGAAGCC-CCTCAGACCCAGCGTCTCGTCAACC-TCCAGGCTTAAGAAGTGGTGAAAAG i papAnu2.chr1 I 17 C 0 s chlSab2.chr25 82582370 286 + 85787240 ----------------------------TGAACCAGG------------------------------TCCCTCCTGGATGATGGAA-GGTG-CTAGATACATGTTTGTCTAGCCACAGGGATCAGAGCTCAGAAGATTGCAGGGACAGG--AAGCCCACTGTGGCATCCTGCCTGCCCTCTCTGAACGTTCACTTTGAGTCACTTC--AGTTACTCTTTACCTGGACAACAACATAATGT----CGGGGAAAACTCATTTATTTGCAAAAGGCAAAATAC-ATG-ACACTGTTTCACTTGAAAGCC-CCTCAGACCCAGCGTCTCTTCAACC-TCCAGGCTTAAGAAGTGGTGAAAAG i chlSab2.chr25 I 34 C 0 s calJac3.chr19 14261888 269 - 49578535 ----------------------------TGAACCAGG------------------------------TCcctcctggac-atgaaa-ggtg-ctacataaa----tgtCCAGCCACAGGGGTCAGAGCTCAGAAGCTTACAGGGACGGG--GAGCCCACTGTGGCATCCTGGCTGCCCTCTCTGAACGTTCACTTTGAGTCACTTC--AGTTTCTCT-----TGGACAACAGCACCCTGT----CGGGGAAGACTCATTTATTT-------GCAAAATAC-ATG-ACACTGTTTCACTGGGAAGCC-CCTCAGACCCAGAGTCTCACCAACC-TGCGGGCTTAAGACGTGGTGATAAG i calJac3.chr19 I 17 C 0 s mm10.chr1 178834636 295 + 195471971 CCCTTTGGGGCTCTCTGAAGGCTGGGGTTGTAACTGGTTGTGCTGTTCCCCCCCCCCCCCCACTCCATCTCTCCCAACACACGGAA-GGTG-CCGAGCAAACGTTTATTCATTC-------------------AGACTGGGGAGCTACGACGTGACCA-----CCATCCTGCCTTTCTTCTCTGAATGTCCCCTTGCAGTCACTCCTTTGCCCCTGTTTACTTGACGAGCCGCATGATGCTTTGTGGGG---------------GCATAGGGGAGACTCT-CTGTACCAAGTGTCACTCCTATGCCACCTCAG--------------------CCCAGCCTTGGAAAGGACTGATCA- i mm10.chr1 C 0 C 0 e canFam3.chr7 36411341 0 + 80974532 C a score=374251.000000 s hg38.chr1_KI270759v1_alt 253162 164 + 425601 ATGGGGAGAGAGTGACTGAATGC-ATTTTTCTGTCTAGGCAATTTAGTATTACAGGAGATGCTCTCAAATCCTTGACCGGAGTGAAGGCAGAGTTCTTGT-CAGTTATGTAAGAAAAACA---GCTCATTGTTATA-TGATGCACACTGAACACCATCGTGTGTTTTCTC s panTro4.chr1 225008484 164 + 228333871 ACGGGGAGAGAGTGACTGAATGC-ATTTTTCTGTCTAGGCAATTTAGTATTACAGGAGATGCTCTCAAATCCTTGACCAGAGTGAAGGCAGAGTTCTTGT-CAGTTATGTAAGAAAAACA---GCTCACTGTTATA-TGATGCACACTGAACACCATCGTGTGTTTTCTC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140261814 164 - 143122389 ACGGGGAGAGAGTGACTGAATGC-ATTTTTCTGTCTAGGCAATTTAGTATTACAGGAGATGCTCTCAAATCCTTGACCGGAGTGAAGGCAGAGTTCTTGT-CAGTTATGTAAGAAAAACA---GCTCATTGTTATA-TGATGCACACTGAACGCCATTGTGTGTTTCCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16970952 167 - 229590362 ATGGGGAGAGAGTGACTGAATGC-ATTTTTCTGTCTAGGCGATTTAGTATTACAGGAGATACTCTCAAATCCTTGACCGGAGTCAAGGCAGAGTTCTTGT-CAGTTGTGTAAGAAAAACAACTGCTCATTGTTATA-TGGTACACACTGAACCTCATCGTGTGTTTTCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223734116 167 - 227556264 ATGGGGAGAGAGTGACTGAATGC-ATTTTTCTGTCTAGGCGATTTAGTATTACAGGAGATACTCTCAAATCCTTGACCGGAGTCAAGGCAGAGTTCTTGT-CAGTTGTGGAAGAAAAACAGCTGCTCATTGTTATA-TGGTACACACTGAACCTCATCGTGTGTTTTCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16784934 167 - 220367699 ATGGGGAGAGAGTGACTGAATGC-ATTTTTCTGTCTAGGCGATTTAGTATTACAGGAGATACTCTCAAATCCTTGACCGGAGTCAAGGCAGAGTTCTTGT-CAGTTGTGTAAGAAAAACAACTGCTCATTGTTACA-TGGTACACACTGAACCTCATCGTGTGTTTTctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82582656 166 + 85787240 ATAGGGAGAGAGTGACTGAATGT-ATTTTTCTGTCTAGGCAATTTAGTATTACAGGAGATACTCTCAAATCCTTGACCAGAGTCAAGGCAGAGTTCTTGT-CAGTTGTGTAAGAAAAACAACTACTCATTGTTATA-TGGTACACACTGAACCTCATCGTGTGTTTTCT- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14262157 159 - 49578535 ATGGAGACAGAG----TTAATGC-A-TTTTCTGTCTAGGCAATGTGGTATTACATGAGATGCTCTCAAATCCCTGACAGGAGTTGAGACAGAGTTCTTGT-CAGTTACATAAGAAAAACA---ACTCATTGTTATA-TGATGCACGTTGAGCCTCATCGTGTGTTTTCTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178834931 142 + 195471971 --GGGATGAAGGTAAGTGTGTGCTAGCTTTCC-----GGCAATTTTGAGT-----------CTCTCAAATCTTCTCCAGG-----AGGCAGAGTTCCCATGCCGATGGATAAGAAA-----CTATACGTCCCTAGAGCGGTACTCATGGGAGATCTCCATGTGCTCCCTC i mm10.chr1 C 0 I 72 e canFam3.chr7 36411341 0 + 80974532 C e ponAbe2.chr1 226375456 923 - 229942017 I a score=655429.000000 s hg38.chr1_KI270759v1_alt 253326 291 + 425601 AGTCTTTGTGTGTGCGGACACGTGGCATTTAAATTAAAATTTggccaggcacagtagctcatgtctgtaatcccagcactttaggaggccaaggcagaaggatcgcttgagcccaaagttgagaccagcctgggcaacgtagggagaccccatctctacagaaatttaaaaagtagccagccatggtggcacacacctgtaatcctagctaaggctgagacaggagaatcacttgagcccgggaagtctaagctccggtgagcctgtgattgtaccactgcact-ccagctt s panTro4.chr1 225008648 291 + 228333871 AGTCTTTCTATGTGCGGACACGTGGCATTTAAATTAAAATTTggccaggcacagtagctcatgtctgtaatcccagcactttaggaggccaaggcagaaggatcgcttgagcccaaagttgagaccagcctgggcaacgtagggagaccccatctctacagaaatttaaaaagtagccagccatggtggcacacacctgtaatcctagctaaggctgagacaggagaatcacttgagcccgggaagtctaagctccagtgagcctgtgattgtaccactgcact-ccagctt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140261978 291 - 143122389 AGTCTTTGTGTGTGCAGACACGTGGTATTTAAATTAAAATTTggccaggcacagtagctcatgtctgtaatcccagcactttaggaggccaaggcagaaggatcgcttgagcccagagtcgagaccagcctgggcaacacagggagaccccatctctacaaaaattcaaaaagtagccagccatggtggctcacacctgtaatcccagctaaggctgagacaggagactcacttgagcctgggaagtctaggctccggtgagcctgcgattgtaccactgcact-ccagctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16971119 290 - 229590362 AGTCTGTGTGTGTGCAGACACGGGGtatttaaattaaaatttggccaggcacagtagctcatgcctgtaatcccagcactttaggaggccaaggcagaaggatcgcttgagcccagagtggagaccagcctgggcaacgtagggagaccctatctctgcaaaaattt-aaaagtagccagccatggtggcacctacctgtaatcccagctaaggctgggacaggagaatcacttgagcccgggaagtctaggctccagtgagcccgtgattgtaccactgcact-ccagctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223734283 290 - 227556264 AGTCTGTGTGTGTGCAGACACGGGGTATTTAAATTAAAATTTggccaggcacagtagctcatgcctgtaatccccgcactttaggaggccaaggcagaaggatcgcttgagcccagagtggagaccagcctgggcaacgtagggagaccctatctctgcaaaaattt-aaaagtagccagccgtggtggcacctacctgtaatcccagctaaggctgggacaggagaatcacttgagcccgggaagtctaggctccagtgagcccgtgattgtaccactgcact-ccagctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16785101 290 - 220367699 agtctgtgtgtgtgcagaCACGgggtatttaaattaaaatttggccaggcacagtatctcatgcctgtaatcccagcactttaggaggccaaggcagaaggatcgcttgagcccagagtggagaccagcctgggcaacgtagggagaccctatctctgcaaaaattt-aaaaatagccagccgtggtggcacctacctgtaatcccagctaaggctgggacaggagaatcacttgagcccgggaagtctaGGCTCCAGTGAgcctgtgattgtaccactgcact-ccagctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82582822 289 + 85787240 -GTCTTTGTGTGTGCAGACACGGGGTATTTaaattaaaatttggccaggcacagtagctcatgcctgtaatcccagcactttaggaggccaaggcagaaggatcgcttgagcccagagtggagaccagcctgggcaatgtagggagaccccatctcttcaaaaatta-aaaagtagccagccgtggtggcacatacctgtaatcccagctaaggctgagacaggagaatcacttgagcctgggaagtctaggctccagtgagcctgtgattgtaccactgcact-ccagctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14262316 266 - 49578535 AGTCTTTGTGTGTGC-----------ATTTAAATTAAAATTTGCccgggtgcagtagctcatgcctgtaatcccagcactttaggaggccaaggcagaagggtcacttgagcccagagtcgagatcagcctgggcaatgtagggagaccccgtctctacaaaaatgaaaaaactagctggccatggtggcacgcacctgtcaatgcagctagggctgagataggagaatcacttga---------------gctccggtcagcccggtgatgtaccactgcactcccagctt i calJac3.chr19 C 0 M 1288 e mm10.chr1 178835073 72 + 195471971 I e canFam3.chr7 36411341 0 + 80974532 C e ponAbe2.chr1 226375456 923 - 229942017 I a score=503965.000000 s hg38.chr1_KI270759v1_alt 253617 308 + 425601 cggccacagagtgagaccctgtctcaaaaaTAGAATATTAATTAATTAAAATTTAAGGAATTCTGTTTTTACTACGGTGAGTAACAAGGttttttttt--------------------------------tggtttttggg-t---ttttgtcgagacggagtcttgctctgtcgcccacgttggtgtgcagtggtgcgatctcagctcactgcaacccccacctcccgggttcaagcgattctcctgcctcagccttccaagtagctgggagacaggcgcacgcccccacacctgcctaattttttgtatattttattagaggcagggtttcaccatgttggt s panTro4.chr1 225008939 323 + 228333871 gggccacagagcgagaccctgtctcaaaaatagaaTACTAATTAATTAAAATTTAAGGAATTCTGTTTTTACTACGGTGAGTAACAAGGTTtttgtttgtttgttt-----------gtttg------tttggtttttggg-t---ttttgtcgagacggagtcttgctctgtcgcccacgttggtgtgcagtggtgcgatctcagctcactgcaacccccacctcccgggttcaagcgattctcctgcctcagccttccaagtagctgggagacaggcgcatgcccccacacctggctaattttttgtatattttattagaggcagggtttcaccatgttggt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140262269 314 - 143122389 gggccacagagcgagaccctgtctcaaaaaaagaaTATTAATTAATTAAAATTTAAGGAATTCTGTTTTTACTACAGTGAGTAACAAGTTTTTTTTTT----------------------TG------GGGGGGGGTGGGG-TGCAGtttttcgagacggagtctcgctctgtcacccaggttggtgtgcagtggcgtgatctcagctgactgcaacctccacctcctgggttcaagcgattctcctgcctcagccttccaagtagctgggagacaggcgtgcgcccccacgcctggctaattttttgtat-ttttagtagagacggggtttcaccacgttggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16971409 336 - 229590362 agaccacagagcgagaccctgtctcaaaaaaagaatattcattaattaaaatttaaGAAATTCTGTTTTTACTACAGTGAGTAACAAGgtttttttgt--ttgtttgtttgtttttggtttgttttgtttttgtttttggg-t---tttttttgagacagagtcttgctctgtcacccaggctggagtacagtggcgcgatctcagttcactgcaacctccacctcccaggttcaagcgattctcctgcctcagccttccaggcagctgggagacaggtgcgtgtccccacgcctggctaa-tttttttat-ttttagtaaagacggggtttcaccattttggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223734573 325 - 227556264 agaccacagagcgagaccctgtctcaaaaaaagaaTATTAATTAATTAAAATTTAAGAAATTCTGTTTTTACTACAGTGAGTAACAAGGTTTTTTTGT--TTGTTT-----------Gtttgttttgtttttgtttttggg-t---tttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggcgcgatctcagttcactgcaacctccacctcccaggttcaagcgattctcctgcctcagccttccaggcagctgggagacaggtgcgtgtccccacgcctggctaa-tttttttat-ttttagtaaagacggggtttcaccattttggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16785391 333 - 220367699 ggaccacagagcgagaccctgtctcaaaaaaagaatattaattaattaaaatttaagaaattctgTTTTTACTACAGTGAGTaacaaggtttttttgt--ttgttt----gtttttggtttgttttgtttttgtttttgggtt---tttttttgagacagcgtcttgctctgtcacccaggctggagtgcagtggcgcgatctcagttcactgcaacctccacctcccaggttcaagcgattctcctgcctcagccttccaggcagCTGGGAGACAAGTGCGTgtccccacgcctggctaa-tttttttat-ttttagtaaagacggggtttcaccattttggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82583111 337 + 85787240 ggaccacagagtgagaccctgtctcaaaaaaggaatattaattaattaaaatttaagaaattCTGTTTTTACTACAGTGAGTAACAAGGtgttttgtt--ttgttt-tgtttttttggtttgttttgtttttgtttttgggtt---tttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggcgcgatctcagttcactgtaacctccacctcccgggttcaagcgattctcctgcctcagccttccaggcaactgggagacaggcgcgtgtccccacgcctggctaattttttttat-ttttagtaaagacggggtttcaccattttggc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178835073 72 + 195471971 I e canFam3.chr7 36411341 0 + 80974532 C e calJac3.chr19 14262582 1288 - 49578535 M e ponAbe2.chr1 226375456 923 - 229942017 I a score=120547.000000 s hg38.chr1_KI270759v1_alt 253925 51 + 425601 caggctggtcttgaattcctgagctcatgatccacccaccttggccttcca s panTro4.chr1 225009262 51 + 228333871 caggctggtcttgaactcctgagctcatgatccacccaccttggccttcca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226376379 50 - 229942017 CAGGCTGGTC-Tgaactcctgagctcatgatccactcgccttggccttcca i ponAbe2.chr1 I 923 C 0 s nomLeu3.chr5 140262583 51 - 143122389 caggctggtcttgaactcctgagctcatgatccacccgccttgggcttcca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16971745 51 - 229590362 caggctggtcttgaactcctgacctcctgatacacccgccttggccttcca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223734898 51 - 227556264 caggctggtcttgaactcctgacctcctgatccacccgccttggccttcca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16785724 51 - 220367699 caggctggtcttgaactcctgacctcctgatccacccgccttggccttcca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82583448 51 + 85787240 caggctggtcttgaactcctgacctcctgatccacccgccttggccttcca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178835073 72 + 195471971 I e canFam3.chr7 36411341 0 + 80974532 C e calJac3.chr19 14262582 1288 - 49578535 M a score=84575.000000 s hg38.chr1_KI270759v1_alt 253976 27 + 425601 aagtgctgggactacaggcgtgagcca s panTro4.chr1 225009313 27 + 228333871 aagtgctgggactacaggcgtgagcca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226376429 27 - 229942017 aagtgctgggattacaggcgtgagcca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140262634 27 - 143122389 aagtgcggggattacaggcgtgagcca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16971796 27 - 229590362 aagtgctgggattacaggcatgagcca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223734949 27 - 227556264 aagtgctgggattacaggcatgagcca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16785775 27 - 220367699 aagtgctgggattacaggcatgagcca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82583499 27 + 85787240 aagtgctgggattacaggcataagcca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14263872 27 - 49578535 AAGGgctgggattacaggcatgagcca i calJac3.chr19 M 1288 C 0 e mm10.chr1 178835073 72 + 195471971 I e canFam3.chr7 36411341 0 + 80974532 C a score=239203.000000 s hg38.chr1_KI270759v1_alt 254003 103 + 425601 ccgtgcccagccTatttttgtttttgtagagat--ggggggtcttactatgttgcccaggctggttttgaactcctggactcaagtgatcctcccacctcagcct s panTro4.chr1 225009340 102 + 228333871 ccgtgcccagccTatttttgtttttgtagagat--ggggg-tcttactatgttgcctaggctggttttgaactcctggactcaagtgatcctcccacctcagcct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226376456 102 - 229942017 ccgtgcccagcctgtttttgtttttgtagagat--ggggg-tcttactatgttgcccaggctggttttgaactcctggactcgagtgatcctcccacctcagcct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140262661 102 - 143122389 ccgtgcccagccTGtttttgtttttgtggagat--ggggg-tcttactatgttgcctaggctggttttgaactcctggactcaagtgaccctcccacctcagcct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16971823 102 - 229590362 ccgtgcccagccTGtttttgtttttgtagagat--ggggg-tcttgttatgttgcccaggctggttttgaactcctggactcaagtgatccttccgcctcagcct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223734976 102 - 227556264 ccgtgcccagccTGtttttgtttttgtagagat--ggggg-tcttgttatgttgcccaggctggttttgaactcctggactcaagtgatccttccgcctcagcct i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82583526 102 + 85787240 ccgtgcccagccTGtttttgtttttgtagagat--ggggg-tcttgttattttgcccaggctggttttgaactcctggactcaagtgatccttccgcctccgcct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14263899 104 - 49578535 ccatgccctgcccgtttttgttttggtagagattaggggg-tcttgctatgttgcccaggctggtttcaaactactggactcaagccatccttccacttcagcct i calJac3.chr19 C 0 C 0 e mm10.chr1 178835073 72 + 195471971 I e canFam3.chr7 36411341 0 + 80974532 C e papAnu2.chr1 16785802 0 - 220367699 C a score=128927.000000 s hg38.chr1_KI270759v1_alt 254106 42 + 425601 cccaaaatgctgggattacaggcgtgagccaccacacccagc s panTro4.chr1 225009442 42 + 228333871 cccaaaatgctgggattacaggcgtgagccaccacacccagc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226376558 42 - 229942017 cccaaagtgctgggattacaggcgtgagccaccacaccgagc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140262763 42 - 143122389 ccctaactgctgggattacaggcgtgagccaccacacccagc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16971925 42 - 229590362 cccaaagtgctgggattacaggcgtgagccgccacaccgagc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223735078 42 - 227556264 cccaaagtgctgggattacaggcgtgagccgccacaccgagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16785802 42 - 220367699 cccaaagtgctgggattacaggcgtgagccgccacaccgaGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82583628 42 + 85787240 cccaaagtgctgggattacaggcgtgagccgccacactgagc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14264003 42 - 49578535 tccaaagtgctgggattgcaggtgtgaaccgccacacccagc i calJac3.chr19 C 0 C 0 e mm10.chr1 178835073 72 + 195471971 I e canFam3.chr7 36411341 0 + 80974532 C a score=667429.000000 s hg38.chr1_KI270759v1_alt 254148 256 + 425601 cTAACAAG------GTTTTTTGTTTTGCTCCT--GTAGGTCTATTTTTTTTTTTTTTCCAATCAGTA-TTTTCAATGTTTTGGCTCCAGAC--AGATTTCAGTGGTGCATCACATGTTA----CCGACGTG-----CCTCCCGTGCCT----CCCTGTCTGTTCATCTGCTGTCGTCTCTGCCAGGG-ATGCTCGTCTCTCATTCGTTTTTTTGGCG-TGGAAACACGCTGCTCAGTCCTCAGGCCCAGCTCCCGTGTCACCTGCCACCTGCAGGCCTTCCT s panTro4.chr1 225009484 252 + 228333871 cTAACAAG------GTTTTTTGTTTTGTTCCT--GTAGGTCTATTTTTTTTTT----CCAATCAGTA-TTTTCAATGTTTTGGCTCCAGAC--AGATTTTAGTGGTGCATCACATGTTA----ccgacgtg-----cctcccgtgcct----ccctgtctgttcatctgctgtcgtctctgccaggg-atgctcgtctctcattcgtttttttggcc-tggaaacacgctgctcagtcctcaggcccagctcccgtgtcacctgccacctgcaggccttcct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226376600 260 - 229942017 cTAACAAC------GTTTTCTGTTTTGTTCCT--GTTGGTCTATTTTTTTTTT-CCCCCAATCAGTA-TTTTCAATGTTTTGGCTCCAGAC--AGATTTTAATGGCACATCACATGTTA----CTGACGTgcaggccctcccgtgtct----ccctgtctgttcatctgctgttgtctctgccaggg-atgctcatctctcattcatttttttggcc-tggaaacatgctgctcagtccttaggcccagctcccgtgtcacctaccaccttcaggccttccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140262805 256 - 143122389 cTAACAAC------GTTTTCCATTTTGTTCCT--GTTGGTCCATTTTTTTTTT----CCAATCAGTA-TTTTCAATATTTTGGCTCCAGAC--AGATTTTAATGGAACATCACATGTTA-----TGacatgcaggccctcccgtgcct----ccctgtctgttcatctgccgtcatctctgccaggg-atgctcatctctcattcatttttttggcc-tggaaacatgctgctcagtcctcgggcccagctcccgtgtcacctaccacctgcagcctttccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16971967 261 - 229590362 cTAACAAG------GTTTTTTGATTTGTTCCT--GTTGGTCTATTTTTTTTTT-CCCCCAATCAGTA-TCTTCAATATTTTGGCTCCAGAC--AGATTTTAGTGGCACATCCCACGTTT----CTGACGCGCAGGCCCTCCCGTGCCT----CCCTGTCTGTTCGTCTGCCGTCGTCTCTGCCAGGGAATGCTCATCTCTCATTCACTTTTCTGGTC-TGGAAACATGCTGCCCAGTCCTCAGGCCCAGCTCCCGTGTCACCTGCCACCTGCAACCCTCCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223735120 261 - 227556264 cTAACAAG------GTTTTTTGATTTGTTCCT--GTTGGTCTATTTTTTTTTT-CCCCCAATCAGTA-TCTTCAATATTTTGGCTCCAGAC--AGATTTTAGTGGCACATCCCACGTTT----CTGACGCGCAGGCCCTCCCGTGCCT----CCCTGTCTGTTCGTCTGCCGTCGTCTCTGCCAGGGAATGCTCATCTCTCATTCACTTTTCTGGTC-TGGAAACATGCTGCCCAGTCCTCAGGCCCAGCTCCCGTGTCACCTGCCACCTGCAACCCTCCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16785844 259 - 220367699 CTAACAAG------GTTTTTTGATTTGTTCCT--gttggtctattttttttt---ccccaatcagTA-TCTTCAATATTTTGGCTCCAGAC--AGATTTTAGTGGCACATCCCACGTTT----CTGACGCGCAGGCCCTCCCGTGCCT----CCCTGTCTGTTCGTCTGCCGTCGTCTCTGCCAGGGAATGCTCATCTCTCATTCACTTTTCTGGTC-TGGAAACATGCTGCCCAGTCCTCAGGCCCAGCTCCCGTGTCACCTGCCACCTGCAACCCTCCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82583670 260 + 85787240 cTAACAGG------GTTTTTTGATTTGTTCCT--GTTGGTCTATTTTTTTTT---CCCCCATCAGTA-TTTTCAATATTTTGGCTCCAGAC--AGGTTTTAATGGCACATCCCACGTTT----CTGACGCGCAGGCCCTCCCGTGCCT----CCCTGTCTGTGCGTCTGCCGTCGTCTCTGCCAGGGAATGCTCATCTCTCATTCACTTTTCTGGCCTTGGAAACATGCTGCTCAGTCCTCAGGCCCAGCTCCCGTGTCACCTGCCACCTGCAGCCCTCCCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14264045 240 - 49578535 cTAATGAG------GCTTTTCA-TTGGTTCTT--GTTGGCCTATATT----------CTAATCAG----------GTTTTTGGCTCCAGAC--AGGTTTTAACAGCGCATTGTGTGTTG----CTGGCCGGCAGGCCAGCCTGTGCCT----CCCTGTCTGCTCACCGGCCCTCATCTCCACCAGGA-ATGCTCCTCTCACCTTCATTTTTTTGTCC-TGGAAACATGCTGCTCGGCCCTCAGGCCCAGCTCCCATGTCACCTGCTACCTGCAGCCCT-CCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178835145 230 + 195471971 CTAACAAGTTACAAGGGTTTTGATTTGCTCTTAGGTTGGTC-ATTTC-------CCTTCAATTGGTATTTTTCAGCATTTTAG-TTCAGACTGAAGTTTTAAT-GCCCTTCAGATGCTACATACAGGCAGGCAGGCCCATTTGTGCCTTTTACTCTCTATAATCCTTCTCTGTC----TTGCCAGCG--------------------TTTGTTGGAT-TGCAAA-AGGCGCTTGTGTCCCAAGGACTAGTTCCTCTG-----CACTACCTG----------- i mm10.chr1 I 72 C 0 e canFam3.chr7 36411341 0 + 80974532 C a score=2578562.000000 s hg38.chr1_KI270759v1_alt 254404 817 + 425601 CTTGTCCCTTCTCCAGGCACTGTGCCTGTGTC-CCCTACTCCAGACCGTGAGTTGTGGATGAAAGGGGCTGTATCTTACTTGCCCCTTTTTGCATTTATTCATGTGGATACATAGATGCTCATTCGCTTCAATTCATTGAACATCTGCTACTGGCCAGGGACTTTTTCCCTTTTGGAAGGAGACCCAGATACCCTC---CAGACATAGGTCCGGCCT--CTCAGGAGTTTTCATTCTCCTGAGAGAGGAGAGAGACTTGTTGAGCTATGCGTGGAGTGC--TGCCTGACAGCTTGCTATTTTCTTTCTTTCCTGTGAGATAAAAATGTACCTTATGGTATTACTTTATTTTAATTCTGCCATGACATTTGTGGCGGTTGTTTTAAGATTCAGAGATTACTGGGTGTTGATCTCCTTATGATACTCTCGGTTCCTAATTATGTTAGAAAAAAAAGCAAAGCGGGAACTTGGCTTTTGTGTTGCCTTCACAGAGTGTGGAGGTTGAAAACATCTCAGCGC-ACTTCACGGAGGTTCTCAGAGACCCCATAAGTTTCTGGAAAAGTGGGAAACGCAAACCT-GTCAACCTGTCAGTCTCTCCCCTCTCACGGAAGCCTGACATGTAAATCTCAAGTTGTTAAACCTGCTGTCAAATGAGCTGCCTCCACTGA----AGACTC-----------------------CCCTCC--GCTCCTCGCA--CTCTCATCACTGCCCCT---CACTCTCTGTC--CCCACAG---------------------CACAGGGAC-------------------AGC-----CT-CCGC-AGACTCCCGTGTGTGTGCTCTGGAGAGAAAAGATTCTGGATTTGGGCGGTCTCACCTCCAAAATTGCAGCCCCTAAGGGGAGC s panTro4.chr1 225009736 816 + 228333871 cttgtcccttcTCCGGGCACTGtgcctgtgtc-ccctactccagactgtgagttgtggatgaaaggggctgtatcttacttgcccctttttgcatttattcatgtggatacatagatgctcattcgcttcaattcattgaacatctgctactggccagggactttttcccttttggaaggagacccagataccctc---cagacataggtcctgcct--ctcaggagttttcattctcctgagagaggagagagacTTGTTGAGCTACGCGTGGAGTGC--TGCCTGACAGCTTGCTATTTTCTTTCTTTCCTGTGAGATAAAAATGTACCTTATGGTATTACTTTATTTTAATTCTGCCATGACATTTGTGGCGGTTGTTTTAAGATTCAGAGATTACTGGGTGTTGATCTCCTTATGATACTCTCGGTTCCTAATTATATTAGAAAAAAA-GCAAAGCGGGAACTTGGCTTTTGTGTTGCCTTCACAGAGTGTGGAGGTTGAAAACATCTCAGCGC-ACTTCACGGAGGTTCTCAGGGACCCCATAAGTTTCTGGAAAAGTGGGAAACGCAAACCT-GTCAACCTGTCAGTCTCTCCCCTCTCACGGAAGCCTGACATGTAAATCTCAAGTTGTTAAACCTGCTGTCAAATGAGCTGCCTCCACTGA----AGACTC-----------------------CCCTCC--GCTCCTCGCA--CTCTCATCACTGCCCCT---CACTCTCTGTC--CCCACAG---------------------CACAGGGAC-------------------AGC-----CT-CCGC-AGACTCCCATGTGTGTGCTCTGGAGAGAAAAGATTCTCGATTTGGGTGGTCTCACCTCCAAAATTGCAGCCCCTAAGGGGAGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226376860 813 - 229942017 cttgtcactcctccaggcACTGTGCCTGTGTC-CCCTACTTCAGACCGTGAGTTGTGGATGAAAGGGGCTGTATCTTATTTGCCCCTTTCTGCATTTATTCATGTGGATACATAGATGCTCATTCGCTTCAATTCATTGAACATCTGCTATTGGCCAGGGACTTTTTCCCTTTTGGAAGGAGACCCAGATACCCTC---CAGACATAGGTCCTGCCT--CTCAAGAGTTTTCATTCTCCTGAGAGAGGAGAGAGACTTGTTGAGCTACGCGTGGAGTGC--TGCCTGACAGCTTGCTATTTTCTTTCTTTCCTGTGAGATAAAAATGCACCTTATGGTATTACTTTATTTTAATTTTGCGATGACATTTGTGGTGGTTGTTTTAAGATTCAGAGATTACTGGGTGTTGATCTCCTTATGATACTCTCGGTTCCTAATTATATTAGAAAAAAA-GCAAAGCGGGAACTTGGCTTTTGTGTTGCGTT--CAGAGTGTGGAGGTTGAAAACATCTCAGCGC-ACTTCACGGAGATTCTCAGGGACCCCATAAGTTTCTGGAAAAGTGGGAAACGCAAACCT-GTCAACCTGTCAGTCTCTCCCCTCTCACAGAAGCCTGACATGTAAATCTCAAGTTGTTAAACCTGCTGTCAGATGAGCTGCCTCCACTGA----AGACT------------------------CCCTCC--GCTCCTCGCG--CTCTCATCACTGCCCTT---CACTCTCTGTC--CCCACAG---------------------CACAGGGAC-------------------GGC-----CT-CCGC-AGACTCCCATGTGTGTGCTCTGGAGAGAAAAGATTCTGGATTTGGGTGGTCTCACCTCCAAAATTGCAGCCCCTAAGGGGAGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140263061 814 - 143122389 cttgtccctccTCCAGGCACTGTGCCTGTGTC-CCCTACTCCAGACCGTGAGTTGTGGATGAAAGGGGCTCTATCTTACTTGCCCCTTTTTGCATTTATTCATGTGGATACATAGATGCTCATTCGCTTCCattcattgaacatctgctattggccaggggctttttcccttttggaaggatacccagataccctc---cagacacaggtcctgcct--ctcaggagttttcattctcccgagagaggagagagac---TTGAGCTACGCGTGGAGTGC--TGCCTGACAGCTTGCTATTTTCTTTCTTTCCTGTGACATAAAAACGTACCTTATGGTATTACTTTATTTTAATTCTGCCATGACATTTGTGGCGGTTGTTTTAAGATTCAGAGATTACTGGGTGTTGATCTCCTTATGATACTCTCAGTTCCTAATTATATTAGAAAAAAA-GCAAAGCGGGAACGTGGCTTTTGTGTTGCATTCGCAGAGTGTGGAGGTTGAAAACATCTCAGCGC-ACTTCACGGAGGTTCTCAGGGGCCCCATAAGTTTCTGGAAAAGCGAGAAACGCAAACCT-GTCAATCTGTCAGTCTCTCCCCTCTCAAGGAAGCCTGACATGTAAATCTCAAGTTGTTAAACCTGCTGTCAGATGAGCTGCCTCCACTGA----AGGCTCCTT--------------------CCCTCC--ACTCCTCACG----CTCATCACTGCCCCT---CACTCTCTGTC--CCCACAG---------------------CACAGGGAC-------------------AGC-----CT-CCGC-AGACTCCCGTGTGGGTGCTCTGGAGGGAAGAGATTCTGGATTTGGGTGGTCTCACCTCCAAAATTGCAGCTCCTGAGGGGAGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16972228 815 - 229590362 CTTGTCCCTCCTCCAGGCACCGTGCCTGTGTC-CCCTACTCCAGACCGTGAGTTGTGGATGAAAGGGGCTGTGTCTTACTTGCCCCTTTTTGCATTTATTCATGTGGATACATAGATGCTCATTTGCGTCAATTCACTGAACATCTGCTATTGGCCAGGGACTTTTTCCCTTCTGGAAGGAGACCCAGATACCCTC---CAGACATAGGTCCTGCCT--TTCAGGAGTTTCCTTTCTCCTGAGCGAGGAGAGAGACTTGTTGCGCTATGCGTGGAGTGC--TGCCTGACAGCTTGCTCTTTTCTTTCTTTCCTGTGAGAGAAAAACGTACCTTATGGTATTACTTTATTTTAATTCTGCCGTGACATTTGTGGCGGTTGTTTTAAGATTCAGAGATTACTGGGTGTTGATCTCCTTATGATACTCTCGGTTCCTAATTACATGAGGAAAAGA-GTAAAGCAGGAACTTGGCTTTTGTGTTGCATTCACAGAGTGTGGAGGTTGAAAACATCTCAGCGC-ACTTCGCGGAGGTTCTCAGGGACCCCATAAGTTTCTGGAAAAGTGGGAAATGCAAACCT-GTCAACCTGTCAGTCTCTCCCCTCTCAAGGAAGCCTGACGTGTAAATTTCAAGTTGTTAAACCTGCTGTCAGATGGGCTGTCTCCACTGA----AGACTCCTT--------------------CCCTCC--GCTCCCCACA--CTCTCATCACTGCCCCT---CACTGTCTGTC--CCCACAG---------------------CACAGGGAC-------------------AGC-----CT-CTGC-AGACTCCCGT----GCGCTCTGGAGAGAAGAGATTCTGGATTTGGGTGGTCTTACCTCCAAAACTGCAGCCGCTAAGGGGAGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223735381 815 - 227556264 CTTGTCCCTCCTCCAGGCACcgtgcctgtgtc-ccctactccagaccgtgagttgtggatgaaaggggctgtgtcttacttgcccctttttgcatttattcatgtggatacatagatgctcaTTTGCGTCAATTCACTGAACATCTGCTATTGGCCAGGGACTTTTTCCCTTCTGGAAGGAGACCCAGATACCCTC---CAGACATAGGTCCTGCCT--TTCAGGAGTTTCCTTTCTCCTGAGCGAGGAGAGAGACTTGTTGCGCTACGCGTGGAGTGC--TGCCTGACAGCTTGCTCTTTTCTTTCTTTCCTGTGAGAGAAAAACGTACCTTATGGTATTACTTTATTTTAATTCTGCCGTGACATTTGTGGCGGTTGTTTTAAGATTCAGAGATTACTGGGTGTTGATCTCCTTATGATACTCTCGGTTCCTAATTACATGAGGAAAAGA-GTAAAGCAGGAACTTGGCTTTTGTGTTGCATTCACAGAGTGTGGAGGTTGAAAACATCTCAGCGC-ACTTCGCGGAGGTTCTCAGGGACCCCATAAGTTTCTGGAAAAGTGGGAAATGCAAACCT-GTCAACCTGTCAGTCTCTCCCCTCTCAAGGAAGCCTGACGTGTAAATTTCAAGTTGTTAAACCTGCTGTCAGATGGGCTGTCTCCACTGA----AGACTCCTT--------------------CCCTCC--GCTCCCCACA--CTCTCATCACTGCCCCT---CACTGTCTGTC--CCCACAG---------------------CACAGGGAC-------------------AGC-----CT-CTGC-AGACTCCCGT----GCGCTCTGGAGAGAAGAGATTCTGGATTTGGGTGGTCTTACCTCCAAAACTGCAGCCGCTAAGGGGAGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16786103 815 - 220367699 CTTGTCCCTCCTCCAGGCACCGTGCCTGTGTC-CCCTACTCCAGACCGTGAGTTGTGGATGAAAGGGGCTGTGTCTTACTTGCCCCTTTTTGCATTTATTCATGTGGATACATAGATGCTCATTTGCGTCAATTCACTGAACATCTGCTATTGGCCAGGGACTTTTTCCCTTCTGGAAGGAGACCCAGATACCCTC---CAGACATAGGTCCTGCCT--TTCAGGAGTTTCCTTTCTCCTGAGTGAGGAGAGAGACTTGTTGCGCTACGCGTGGAGTGC--TGCCTGACAgcttgctcttttctttctttcctgtgagAGAAAAATGTACCTTATggtattactttattttaattctgcCGTGACATTTGTGGCGGTTGTTTTAAGATTCAGAGATTACTGGGTGTTGATCTCCTTATGATACTCTCGGTTCCTAATTACATGAGGAAAAGA-GTAAAACAGGAACTTGGCTTTTGTGTTGCATTCACAGAGTGTGGAGGTTGAAAACGTCTCAGCGC-ACTTCGCGGAGGTTCTCAGGGACCCCGTAAGTTTCTGGAAAAGTGGGAAATGCAAACCT-GTCAACCTGTCAGTCTCTCCCCTCTCGAGGAAGCCTGACGTGTAAATTTCAAGTTGTTAAACCTGCTGTCAGATGGGCTGTCTCCACTGA----AGACTCCTT--------------------CCCTCC--GCTCCCCACG--CTCTCATCACTGCCCCT---CACTGTCTGTC--CCCACAG---------------------CACAGGGAC-------------------AGC-----CT-CTGT-AGACTCCTAT----GCGCTCTGGAGAGAAGAGATTCTGGATTTGGGTGGTCTCACCTCCAAAACTGCAGCCGCTAAGGGGAGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82583930 808 + 85787240 CTTGTCCCTCCTCCAGGCACCGTGCCTGTGTC-CCCTACTCCAGACCGTGAGTTGTGGATGAAAGGGGC--TGTCTGACTTGCCCCTTTTTGCATTTATTCATGTGGATACGTAGATGCTCATTTGCTTCAATTCACTGAACATCTGCTATTGGCCAGGGACTTTTTCCCTTCTGGAAGGAGACCCAGATACCCTC---CAGACATAGGTCCTGCCT--TACAGGAGTTTTCTTTCTCCTGAGAGAGGAGCGAGACTTGTTGAGCTACGCATGGAGTGC--TGCCTGACAGCTTGCTATTTTCTTTCTTTCCTGTGAGATAAAAACGTACCTTATGGTA-----TTATTTTAATTCTGCCATGACATTTGTGGCGGTTGTTTTAAGATTCAGAGATTACTGGGTGTTGATCTCCTTATGATACTCTCGGTTCCTAATTACATGAGGAAAAGG-GTAAAGCAGGAACTTGGCTTTTGTGTTGCATTCACAGAGTGTGGAGGTTGAAAACATCTCAGCGC-CCTTTGTGGAGGTTCTCAGGGACCCCATAAGTTTCTGGAAAAGTGGGAAATGCAAACCT-GTCAACCTGTCAGTGTCTCCCCTCTCAAGGAAGCCTGACGTGTAAATTTCAAGTTGTTAAACCTGCTGTCAGATGGGCTGTCTCCACTGA----AGACTCCTT--------------------CCCTCC--GCTCCCCGCG--CTCTCATCACTGCCCCT---CACTGTCTGTC--CCCACAG---------------------CACAGGGAC-------------------AGC-----CT-CTGC-AGACTCCCGT----GCGCTCTGGAGAGAAGAGATTCTGGATTTGGGTGGTCTCACCTCCAAAACTGCAGCCGCTAAGGGGGGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14264285 756 - 49578535 CTTGTCCCTCCTCCAGGCGCTGTGCCTGTGTT-CCCTACCCCAGACCACGAGTTGTGGAGGAAA-GGGCTGTATCTTACTCACCCCTTTTCGCATTTATTCATGTGGATACATTGATGCtcatttgtttcaattcattgaacatctgccattggccagggaatgtttccctgttggaaggagatccagatcccttc---aagacataggtcctgcct--ttcaggagctgtcattctcttgggagaggggagagacTGATTGAGCTACACGTGGAG-GCTGTGCCCGACAGCTCGC-ATTTTCTTTCTTTCCTGTGAGATAAAACCGTACCTTATGGTATGACTTTATTTTAATTCTGCCATGACATTTGCGGTGGTTGTTTTAAGATTCAGAGATCACTGGGTGTGGATCCTCCCGCGACACTCTCTGCTCCTGATTACATTACAAAAACA-GC--------GACTTGGCTTTC-TGTTGCATTCACAGCGCGTGCAGGTTT-AAACATCCCACTGC-ACTTCAGGGAGGCTCTCAGGGACCCCACAAGTTTCCGGAAAAGTGGGAAATGCAAACCT-GTCAACCTGTCAGT--------------------CTGACGTGTAAGTCTCAAGTTGTTAAACCCGCTGTCAGATGAGCTGTCTCCACTGA----AGACAT----------------------------C--GCTCCCCCCG--CCCTCAT--GTGCTCAT---C----CCTGTC--CCCGCAG---------------------CGCAGGGAC-------------------AGA-----CTGCCAC-AGACTCCCAT----GTGCTCTGGAG-----AGATTCTGGATTTGG---------CCTCC-AGACTGCAGCCCCTAAGGGGAGC i calJac3.chr19 C 0 I 549 s mm10.chr1 178835375 635 + 195471971 ---------------AGTGCTGTGCACATGACACACAGCTCCACATCA-------TCCATGAAAGGGGCCCTAACT-ATTCAACACTTCTTTAACTCACTCACTGGAAATTGTAACTATGCACTCAACTCAGTGCATTGAGCACCTGCAGTTTACAAGGGAATGTCTCC---GTGGATGGAGACCCATTTGCCCTTGGACACATACAACCCCTGCCT--CTAAAGA---------CTGTTAGGAGAGGAGAAAGATTT-TTGAGCCATACATATA-TAT--TGCCCCAA-------------CCACCTCTCCTGAGA-ATAAAACTCCAGC-TGTGATATAACTCCATTTTAATTCTG-----------------------------------------------------------------------------------------------GC---------ACTCTGTTT------------------------------------------------------GGGGTTCTCAGGGACCCTGCAAGTTTCTG---AAGTG-TAAGTACAATCCT-GTCAGGCCATCAGCTGCCATCCTCT-GAGGCAATCTGATGTGAAGCTGTCAGGTTGTTACGCCTGCTCTCAGCGGCATCCTCTTTTCTGAGCACAGCCTTCTCTCTAGCTGCATCTGTCATCATCCCTC--AGTCCCCACG--CCCACCATGCTTCCCTTAGACGCTGGTGGCCAGCCCACGG---------------------CA-GGCGGC-------------------TGCTAATGCC-CTGG-ACTCTCCCAT----ATGC-CTGGAGAAAAGAGGTGTGGGCTCTGG---TGCTCACTTTCCAGACCATAGCTCCTAAGGGCAGT i mm10.chr1 C 0 C 0 s canFam3.chr7 36411341 829 + 80974532 CATAACCCACCACCAG---CTGTGTGTGCATC-CCCA---TCAGACCATGAACTATGGA-GGAAGGGGCTGTGTGATAGTCACCTTCCATGGTACATATTCATCTGAACTCACAGA-GCCCA-TCACTTTGGTGCATGGAGCATCTGCTTACTGCAG------CCTCCCCTCTTGGAAGGAGAACCAGACGTTCCC---AAGATGCAGACCTGGCCTTACTTAAGAGCTTCCCTTCTGGTAAGAGAGGAGGAAGGCTGGCGGAGCTCTGTGTGTGATGTGGGGCCTGACAACCTGCCATTCCGTCTCCTTCCTGAGA-AAGAAAACGTAACTTATGGTATTACTTTGTTTTAATTATGCTGCTATAC---------TTGTTTTAAAAATCAGAGATCACAGCATGATAATCCTCTTTTTATCTCCT--GTTCTTAATTATGTTCAAGAAAGG-ACAAAGAAGGAAAATGGATTGTGTGAGGCTTTCACAGAGTATGGAGGCTTAACACATCTCACTCCTGCTTCATGCAGGTTCTCAGGAACTCTTT-CGTTTCTG-------GGAAAATGCAAATTTGGTGAACCTGTCACTCTC-CCCCTCCCAAGGAAATCTGCCATGTGCATCTCAGGTTGTAAGACCTGCTGTCAAATGAGTTGTCGGCCCCAG----AGACATCCT--------------------TCCCTCAGGCTGCCAGCTTCCTCTCTCTGCCACCCTT---TTCTCCTTGTC--CATACAGGGTTTTGTTTTGTTTTTCAGACAAGAGGGCCCAGCCTTTCCACCCTGGGAGC-----CT-CCCCAAGATACCCTT----GTGCTCTGGAATGAACACATTCTGGACTTCTG-GGTCTCACCTTCAAAGTCCCAGTCCCTAAGGGGAGC i canFam3.chr7 C 0 C 0 a score=2524031.000000 s hg38.chr1_KI270759v1_alt 255221 731 + 425601 CGTGCTAAGGTGTGATACAGGCCATGCCCCTTCTAGCCCC---ATGGGACACCTGACTGATAGCAGCCTGTGCAGATGTGAGGAACAGAAGGTGGCCCCAGACCCCTTAGGAGAAACCAAAG-TGCCTCAGAGACAGGACAAGTGCTACCCCGGAGGCCAGTCACCAGGTGACCT-GGGAGCTGGGAACCTTTTCAGCCTA-TGGGTGGCTGTTTATCACGAGGGGCATTAGACAGACAGGAGGCAGTGCTGAAATTCAACAGCACAAAGCAATTTCCAGCTTCATCTTGGCTTATTAATAATGAAACAGCAATAGCGCAGGCACAAATCAACAGTAAGTAGGTGGGTGGGTGAGACAAGTTG--GACATTTGGGGAACAGCCTGGGCAGCTACCGATACAGAGGGAAGCCATTTGGTGTGTGTACCTCCCCTCTTCCCTGGGATAGGAGCAAACCTGAA--ATGAGAACGGC--AGTCATCTG----CACACAAAAACTAGGTTAGGAAACTG-----TTTT--CTAAGGGGCCAGGTTGGGTCACTCTTTGTGACAAGAACCGTGTGAACCA--CTTCTTACCTGTAATTCTGACTCAGCATTGATATTT-------------------GAAAATT-----------------CTTCC--------------------------CTAGGGctg-------------ggtactgagtactgttctgagtg-cattacatacaacagctcatttaCATACGTAATACATTCAC-ATACATCAATCATTTGCATGTATCAACTCATTTATGTACATCAACTCATTtgcatac-------------ct s panTro4.chr1 225010552 731 + 228333871 CGTGCTAAGGCGTGATACAGGCCATGCCCCTTCTAGCCCC---ATGGGACACCTGACTGATAGCAGCCCGTGCAGATGCGAGGAACAGAAGGTGGCCCCAGACCCCTTAGGAGAAACCAAAG-TGCCTCAGAGACAGGACAGGTGCTACCCCGGAGGCCAGTCACCAGGTGCCCT-GGGAGCTGGGAACCTTTTCAGCCTA-TGGGTGGCTGTTTATCACGAGGGGCATTAGGCAGACAGGAGGCAGTGCTGAAATGCAACAGCACAAAGCAATTTCCAGCTTCATCTTGGCTTATTAATAATGAAACAGCAATAGCGCAGGCACAAATCAACAGTAAGTAGGTGGGTGGGTGAGACAAGTTG--GACATTTGGGGAACAGCCTGGGCAGCTACAGATACAGAGGGAAGCCATTTGGTGTGTGTACCTCCCCTCTTCCCTGGGATAGGAGCAAACCTGAA--ATGAGAACGGC--AGTCATCTG----CACACAAAAACTAGGTTAGGAAACTG-----TTTT--CTAAGGGGCCAGGTTGGGTCACTCTTTGTGACAAGAACCGTGTGAACCA--TTTCTTACCTGTAATTCTGACTCAGCATTGATATTT-------------------GAAAATT-----------------CTTCC--------------------------CTAGGGCCG-------------Ggtgctgagtactgttctaagtg-cattacatacaacagctcatttaCATACGTAATACATTTAC-ATACATCAATCATTTGCATGTATCAACTCATTTATGTACATCAACTCATTtgcatac-------------ct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226377673 728 - 229942017 CGTGCTAAGGCGTGATACAGGCCATGCCCCTTCTAGCCCC---GTGGGACACCTGGCTGATAGCAGCCTGCGCAGATGCAAGGAACAGAAGGTGGCCCCAGACCCCTTAGAAGAAACCAAAG-TGCCTCAGAGACAGGACAGGTGCTACCCCGGAGGCCAGTCACCAGGTGCCCT-GGGAGCTGGGAACCTTTTCAGCCTG-TGGGTGGCTGTTTATTGCAAGGGGCATTAGGCAGACAGGAGGCAGTGCTGAAATTCAACAGCACAAAAAAATTTCCAGCTTCATCTTGGCTTATTAATAATGAAACAGCAATAGCGCAGGCACAAATCAACAGTGAGTAGGTGGGTGGGTGAGACAAGTTG--GACATTTGGGGAACAGCCTGGGTAGCTACAGATACAGAGGGAAGCCATTTGGTGTGTGTACCTCCCCTCTTCCCTGGGACAGGAGCAAACCTGAA--ATGAGAACGGC--AGTCATCTG----CACACAAAAACTAGGTTAGGAAACTG-----TTTT--CTAAGGGGCCAGGTTGGGTCACTCTTTGTGACAAGAACCGTGTGAACCA--TTTATTACCTGTAATTCTGACTCAGCATTGATATTT-------------------GAAAATT-----------------CTTCC--------------------------CTAGGGctg-------------ggtgctgagtactgttctaagtg-cattacatacaacagctcatttaCATACATAATACATTTAC-ACACATCAATCATTTACATGTATCAACTCATTTACGTACATTAACTCATTTGCATA---------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140263875 728 - 143122389 CGTGCTAAGGCGTGATACAGGCCATGCCCCTTCTAGCCCC---GTGGGACACCTGGCTGAT---AGCCTGTGCAGATGCGAGGAACAGAAGGTGGCCCCAGACCCTGTAGGAGAAACCAAAG-TGCCTCAGAGACAGGACAGGTGCTACCCCGGAGGCCAGTCACCAGATGCCCT-TGGAGCTGGGAACCTTTTCAGCCTA-TGGGTGGCTGTTTATCACGAGGGGCATTAGGCAGACAGGAGGCAGTGCTGAAATTCAACAGCACAAAGCAATTTCCAGCTTCATCTTGGCTTATTAATAATGAAACAGCAAGAGCGCAGGCACAAATCAACAGTAAGTAGGTGGGTGGGTGAGACAAGTTG--GACATTTGGGGAACAGCCTGGGCAGCTACAGATACAGAGGGAAGCCATTTGGTGTGTGTACCTCCCCTCTTCCCCGGGACAGGAGCAAACCTGAA--ATGAGAACGGC--AGTCATCTG----CACACAAAAACTAGGTTAGGAAACTG-----TTTT--CTAAGGGGCCAGGATGGGTCACTCTTTGTGACAAGAACTATGTGAACCA--TTTATTACCTGTAATTCTGACTCAGCATTGATATTT-------------------GAAAATT-----------------CTTCC--------------------------CTAGGGctg-------------ggtgctgagtattgttctaagtg-cattacatacaacagctcatttaCATACATAATACATTCAC-ACACATCAATCATTTACGTGTATCAACTCATTTACGTACATCGGCTCATTTGCATAC-------------CT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16973043 731 - 229590362 CGTGCTAAGGCGTGATACACGCCGTGCCCCTTCTAGCCCC---ATGGGACACCCGGCTGATAGCAGCCTGTGCAGATGCGAGGAACAGAAGGTGGCCCCAGACCCCTTAGGAGAAACCAAAG-TGCCTCAGAGACAGGACAGGTGCTACCCCGGAGACCAGTCACCAGGTGCCCT-GGGAGCT-GGAATCTTTTCAGCCTA-TGGATGGCTGTTTATCACGAGGGGCATTAGGCAGACAGGAAGCAGTGCTGAAATTCAACAGCAGAAAACGGTTTCCAGCTTCATCTTGGCTTATTAATAATGAGACAGCAATAGTGCATGCACAAATCAACAGTAAGTAGGTGGGTGGCTGAGACGAGTTG--GACATTTGGGGAGCAGCCTGGGCAGCTACAGATACAGAGGGAAGCCATTTGGTGTGTGTACCTCCCCTCTTCCCTGGGACAGGAGCAAACCTGAA--AGGAGAACGGC--AGTCATCTG----CACACAAAAACTAGGTTAGGAAACTG----TTTTT--CTAAGGAGTCAGGTTGGGTCACTCTTTGTGACAAGAACTATGTCAAGCA--CTTATTACCTGTATTTCTGACTCAGCATTGATATTT-------------------GAAAATT-----------------CTTCC--------------------------CTAGGGctg-------------ggtgctgagtgctggtctaagtg-ctttacatacaacagctcatttGCATACataatacattcac-acacatcaatcatttacatgtatcagctcatttatgtacatcaactcatttgcatac-------------ct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223736196 731 - 227556264 CGTGCTAAGGCGTGATACAGGCCGTGCCCCTTCTAGCCCC---ATGGGACACCCGGCTGATAGCAGCCTGTGCAGATGCGAGGAACAGAAGGTGGCCCCAGACCCCTTAGGAGAAACCAAAG-TGCCTCAGAGACAGGACAGGTGCTACCCCGGAGACCAGTCACCAGGTGCCCT-GGGAGCT-GGAATCTTTTCAGCCTA-TGGATGGCTGTTTATCACGAGGGGCATTAGGCAGACAGGAAGCAGTGCTGAAATTCAACAGCACAAAACGGTTTCCAGCTTCATCTTGGCTTATTAATAATGAGACAGCAATAATGCATGCACAAATCAACAGTAAGTAGGTGGGTGGCTGAGACGAGTTG--GACATTTGGGGAGCAGCCTGGGCAGCTACAGATACAGAGGGAAGCCATTTGGTGTGTGTACCTCCCCTCTTCCCTGGGACAGGAGCAAACCTGAA--AGGAGAACGGC--AGTCATCTG----CACACAAAAACTAGGTTAGGAAACTG----TTTTT--CTAAGGAGTCAGGTTGGGTCACTCTTTGTGACAAGAACTATGTCAAGCA--CTTATTACCTGTATTTCTGACTCAGCATTGATATTT-------------------GAAAATT-----------------CTTCC--------------------------CTAGGGctg-------------ggtgctgagtgctggtctaagtg-ctttacatacaacagctcatttGCATACATAATACATTCAC-ACACATCAATCATTTACATGTATCAGCTCATTTATGTACATCAACTCATTTGCATAC-------------CT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16786918 733 - 220367699 CGTGCTAAGGCATGATACAGGCCATGCCCCTTCTAGCCCC---ATGGGACACCTGGCTGATAGCAGCCTGTGCAGATGCGAGGAACAGAAGGTGGCCCCAGACCCCTTAGGAGAAACCAAAG-TGCCTCAGAGACAGGACAGGTGCTACCCCGGAGACCAGTCACCAGGTACTCT-GGGAGCT-GGAATCTTTTCAGCCTA-TGGATGGCTGTTTATCACAAGGGGCATTAGGCAGACAGGAAGCAGTGCTGAAATTCAACAGCACAAaacagtttccagcttcatcttgGCTTATTAATAATGAAACAGCAATAGTGCATGCACAAATCAACAGTAAGTAGGTGGGTGGCTGAGACGAGTTGGAGACATTTGGGGAGCAGCCTGGGCAGCTACAGATATAGAGGGAAGCCATTTGGTGTGTGTACCTCCCCTCTTCCCTGGGACAGGAGCAAACCTGAA--AGGAGAACGGC--AGTCATCTG----CACACAAAAACTAGGTTAGGAAACTG----TTTTT--CTAAGGAGTCAGGTTGGGTCACTCTTTGTGACAAGAACTATGTCAAGCA--CTTATTACCTGTATTTCTGACTCAGCATTGATATTT-------------------GAAAATT-----------------CTTCC--------------------------CTAGGGCTG-------------GGTGCTGAGTGCTggtctaagtg-ctttacatacaaCAGCTCATTTGCATACATAATACATTCAC-ACACATCAATCATTTACATGTATCAGCTCATTTATGTACATCAACTCATTTGCATAC-------------CT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82584738 729 + 85787240 TTTGCTAAGGCGTGATACAGGCCATGCCCCTTCTAGCCCC---ATGGGACACCTGGCTGATAGCAGCCTGTGCAGATGCGAGGAACAG-AGGTGGCCCCAGATCCCTTAGGACAAACCAAAG-TGCCTCAGAGACAGGCCAGGTGCTACCCCGGAGACCAGTCACCAGGTGCCCT-GGGAGCTGGGAATCTTTTCAGCCTA-TGGATGGCTGTTTATCACGAGGGGTATTAGGCAGACAGGAGGCAGTGCTGAAATTCAACAGCACAAAGCGGTTTCCAGCTTCATCTTGGCTTGTTAATAATGAAACAGCAATAGTGCATGCACAGATCAACAGTGAGTAGGTGGGTGGCTGAGACGAGTTG--GACATTTGGGGAACAGCCTGGGCAGCTACAGATACAGAGGGAAGCCATTTGGTGTGTGTACCTCCCCTCTTCCC-GGGACAGGAGCAAACCTGAA--AGGAGAACGGC--AGTCATCTG----CACACAAAAACTAGGTTAGGAAACTG----TTTTT--CTAAGGAGCCAGGTTGGGTCACTCTTTGTGACAAGAACTATGTCAACCA--CTTATTACCTGTATTTCTGACTCAGCATTGATATTT-------------------GAAAATT-----------------CTTCC--------------------------CTAGGGCTG-------------Ggtgctgagtgccggtctaagtg-ctttacatacaacagctcatttGCATACATAATACATTCAC-ACACATCAATCATGTA-Atgtatcagctcatttatgtacatcaactcctttgcatac-------------ct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14265590 729 - 49578535 CGTGCTAAGGTGTGATACAGGCCATGACCC-TCTGGCCCC---ATGGGACACCTGGCTGACAGCAGCCTGTGCTGATGCGACAAACAGAAGGTGGCCTCAGACCCCTTAGGAGAAAGCATAG-TGCCTCAGAGATAGGACGGG-GCCACCCCAG-GGCCAGTCACCGGGGGACCT-GGGAGCTGGGAATCTTTTCAGCCTA-TAGGTGGCTGTTTATCACGAGGGGCCTTAGGCAGACAAGAGGCAGTTCTGAAACCCAACAACACAAAGCAATTTCCAA------CTTGGCTTCTGAATAATGGAACGGCGGTAGCACAGGCACAGATCAACTGGAAGTAGGCGGGTGGAAGGGGAGAGCTG--GACATTTGGGGAACAGCCTGAGCAG-TGCAGAGACAGAGGGAAGCCATTTGGTGTGTGTACCTCCCTTCTTCCCTGGGGTAGGAGCAAACCTGAA--GTGAGAACGGCAGAGTCATC-G----CACATGGAAACGAGGTTAGGAAACCTAGTTTTTTA--CTAAGGGACCAGGTTGGGTCACTTTTTGTGACAAGAACTGTGTGAACCATTTTTATTACCCGTTATTCTGACTCGGCATTGATAGTT-------------------GAAAATT-----------------CTTCC--------------------------CTAGGacta-------------ggtgctgagtactgttctaagtg-ctttacatacaacagctcatttaCATACATAATACATTTAT-ACACGTCAATCATTTACACACATCAACTCATTTACGTACATCAACTTAtttgcatac-------------ct i calJac3.chr19 I 549 C 0 s mm10.chr1 178836010 773 + 195471971 CGTGT--GGGCGCTATATGCTACATGCTATAT---GCCTC---ATGGGACACCTGGCTGCCTGCGGTCAGTGTGGACTC---TGAAAGTGGGTGGCCTCCGCCCCTCTTCAAGAAGCAACAGATGCCTTAGAGCCAGGGCAAGCACTTTCTGGAAGGTGTTTCATTGGGTGCCCT-GAAGAATGGCAGCCTTCACAGTTTA-GAGGTGGCTGTTTCCCAAGATGGGCATTTGACAGACAGGAGGCCGTGCTGAAACCCAGCAGTTCAAAGCTGCTTCCAACTTGATCTTGGCTTGTTTGTGGTGAGAACACGGTAGTATGGGCAGACATTGACAGTACGTGGGTGTGTGGAAGAGAGGAAGAG--GACATTTGGGGAACAGCCTGGGCAGCTGCAGATACAGAGGAAAGCTATTTGGTGTGTATATTCCTCCTGTCCCCAGTG--AAGAGCCAGCCTGAA--GGGCCA-------AGGTGTCAG----CACACAGAAGCTGGGGTGTGAATGCC-----CTCC--CTAAGGGACCAGGATGGTTTGCTC--AGTGAAGAGAA---TGTCAG-----AGTATTACCT-TAATTCTGACTTAGCATTGGGATTT-------------------GAAATCCACATAGCAAAGGTACAACTTCCTGTGTCTTGGGCAGTAGAGACAATAGCTAATGCTGATCTGGTCC---CGGGACTGAGCACACCTCAAAGTGTTTTTACATTCAGCTTTTCATTTACATACACGATACATTTATAATATATACATCATTTACATATAT-GGCACATTTA--TATGTTAGTTCATTGACATACAATATAGTAATATAC i mm10.chr1 C 0 C 0 s canFam3.chr7 36412170 713 + 80974532 TGTGCTGAAGTCCAACACAGGCCATACCCTTCTCAGCCCATGGGAGGGAGACCTGGTTGGCAGCAGCCTCTACAGACGTGGTAACCAGAGGGTGGCCCTAGCCCCTTGGGGGGGAACCAGAGCCGCCT---------------------CCCAAGGCTCA-----CAGGTGCTCTAGGGAGCTGGGAAGTCTTTCATTTCAGGGGGTGGCTGTTGACCATAGGGAGGACTTGGCACACAGGTGGCAGTGCTGACACCCAGCAGCACAAAGCCCTTTCCAGCTAGATCTTGGCTGATTAGTAATAAAATGGCAGTACTG----------GTGACAGTAAGTAGGTG-GCGGAAGGGGAGAGTTG--GACATTTGGGG-------------------------------AGCCATTTGGTATGTGCGTAACGCTCCCCTCCCGGGGGAAGAGCAGACCTGAGACAGGGAGACAG---AGTCATCTGTACATACACACAAAGCAGGTTCGTGAGCTA-----TTGTAGCTGTGGGGACCAG-TGGGTTCCTC----TGCCGAGAGCCACTTGAACTG------TTCTCCACAGTTCTGACTCAGTGTTGGTATTTTGCATCCCTGCTAAAAAAGGGAGAGC-----------------ATTCCTGTTTTTGCCATAATGATaatagtcactaatactgatgtagtactaactgtgctaagtgctgtactaagtg-ctttacatacattggctcatttaCATACATAATACATATAT-A----------GTTTGCATGGATTAACTCATTTATATACAT-AATACATTTGCATGC-------------t- i canFam3.chr7 C 0 I 322 a score=135807.000000 s hg38.chr1_KI270759v1_alt 255952 41 + 425601 catttcatttgta-------cata------actcat------ttgcatataccaactcat s panTro4.chr1 225011283 41 + 228333871 catttcatttgta-------cata------actcat------ttgcatataccaactcat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226378401 41 - 229942017 CATTTCATTTGCA-------CATA------ACTCAT------TTGCATATACCAACTCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140264603 41 - 143122389 catttcatttgta-------cata------actcat------ttgcatataccaactctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16973774 40 - 229590362 catttcatttgca-------cat-------aatcat------ttgcatataccaactcat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223736927 40 - 227556264 CATTTCATTTGCA-------CAT-------ACTTAT------TTGCATATACCAACTCAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16787651 41 - 220367699 CATTTCATTTGCA-------CATA------ACTCAT------TTGCATATACCAACTCAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82585467 41 + 85787240 catttcatttgca-------cata------actcat------ttgcatacaccaactcat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14266319 41 - 49578535 catctcatttgca-------caca------actcat------ttgcatatttcaactcat i calJac3.chr19 C 0 C 0 s mm10.chr1 178836783 53 + 195471971 CAACTTGTTTACA-------CGCACGACATAATCATTTACAGTTGCATACATCAGCTCAT i mm10.chr1 C 0 I 499 s canFam3.chr7 36413205 48 + 80974532 cattcaatctgtaacaCACGTGTA------GTACAT------TTAtatagattaacccat i canFam3.chr7 I 322 C 0 a score=478032.000000 s hg38.chr1_KI270759v1_alt 255993 178 + 425601 taaagttgtctcttttactagtgaggaaactgaggcctagagagTCATGTGCATG------------------CTG----------------------CAT-CTCTGCATGCTTC--------CTCTGATGGTTTGATGTGGGTCAATCCTACGTCTGTGCACATCTTAACAACTATCG-TAGGTGTAGGGTGCCTT-TGGTTTACTAGAGGTTTCATCAGTCCACCTG s panTro4.chr1 225011324 178 + 228333871 taaagttgtctcttttactagtgaggaaactgaggcctagagagTCATGTGCATG------------------CTG----------------------CAT-CTCTGCATGCTTC--------CTCTGATGGTTTGATGTGGGTCAGTCCTATGTCTGTGCACATCTTAACAACTATCG-TAGGTGTAGGGTGCCTT-TGGTTTACTAGAAGTTTCATCAGTCCACCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226378442 178 - 229942017 TAAAGttgtctcttttactagtgaggaaactgaggcctagagagtcatgtgCATG------------------CTG----------------------CAT-CTCTGCATGCTTC--------CTCTGATGGTTTGATGTGGGTCAATCCTACGTCTGTGCACATCTTAACAACTATCA-TAGGTGTAGGGTGCCTT-TGGTTTACTAGAAGTTTCATCAGTCCACCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140264644 178 - 143122389 taaagttgtctcttttactagtgaggaaactgaggcctagagagTCATAGGCATG------------------CTG----------------------CAT-CTCTGCATGCTTC--------CTCTGATGGTTTGATGTAGGTCAATCCTACGTCTGTGCACATCTTAACAACCATCA-TAGGTGAAGGGTGCCTT-TGGTTTACTAGAAGTTTCATCAGTCCACCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16973814 164 - 229590362 taaagttgtctcttttactagtgaggaaactgaggcctagggagT-----------------------------------------------------CAT-CTGTGCATGCTTC--------CTCTGATGGTTTGATGTGGGTCAGACATATGTCTGTGCACACCATAACAACTATCC-TAAGTGTAGTGTGCCTT-T-GTTTACTAGAAGTTTCATCAGTCCACCTG i rheMac3.chr1 C 0 I 65 s macFas5.chr1 223736967 163 - 227556264 TAAAGttgtctcttttactagtgaggaaactgaggcctagggagT-----------------------------------------------------CAT-CTGTGCATGCTTC--------CTCTGATGGTTTGATGTGGGTCAGACATATGTCTGTGCACACCATAACAACTATCC-TAAGTGTAGTGTA-CTT-T-GTTTACTAGAAGTTTCATCAGTCCACCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16787692 164 - 220367699 TAAAGTTGTCTCTTTTActagtgaggaaactgaggcctagggaGT-----------------------------------------------------CAT-CTGTGCATGCTTC--------CTCTGATGGTTTGATGTGGGTCAGACATATGTCTGTGCACACCATAACAACTATCC-TAAGTGTAGTGTGCCTT-T-GTTTACTAGAAGTTTCATCAGTCCACCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82585508 164 + 85787240 taaagttgtctcttttactagtgaggaaactgaggcctagggagT-----------------------------------------------------CAT-CTGTGCATGCTTC--------CTCTGATGGTTTGATGTGGGTCAGACATATGTCTGTGCACACCATAACAACTATCC-TAAGTGTGGGGTGCCTT-T-GTTTACTAGAAGTTTCATCAGTCCACTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14266360 187 - 49578535 taacgttgtctcttttcctaaggaggaaactgaggcctaaagagtcacgtgcctgagttcagacagGCC-GCTCTG----------------------CATGCTGCTCACGCTGC--------CTCTGACAGTTTGATGTGGGTCAAAGCCACGTCT----------TAACAACTATCGTTAAGTGTAGGGTGCGTC-TGGGTTACTAGAAGTTCTGTCAGCCCACCTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178837335 155 + 195471971 TAGAATCATCTCTCTTAGAGATGAGAGACCTAAGCCT------GT-----------------------------------------------------TTT-CTGT-CATCTTGC--------ATCTATTGATTTGACTCAGGTCCATTGTATACCTGTGCACATCATAACAGTCATAG-TGTG---AAGGTATAGC-TGGTTAACTAGTCATTTCACCAGCCAGCCTG i mm10.chr1 I 499 C 0 s canFam3.chr7 36413253 222 + 80974532 ttaaatca-ctattttactgatgaggaaactgagtcacagggaatcctgtgcctgaggtcagaggggtcaactctggctccagactctcagctcctgacta-ccctgcccactgcacccactgctcCAACGGTTCCATTGGGATCAGCCCCCTACCCGGGCACGT--TACCAACTGTTT-CACGTG-GGGGTGCCTTATGGATTGCTAGGAGCTT-GTCAGCCCAGCTG i canFam3.chr7 C 0 C 0 a score=28871.000000 s hg38.chr1_KI270759v1_alt 256171 22 + 425601 ATTCTCAC---TACTGACGTAAATG s panTro4.chr1 225011502 22 + 228333871 ATTCTCAC---TACTGACGTAGATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226378620 22 - 229942017 CTCCTCAC---CACTGACGTAGACG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140264822 22 - 143122389 ATCCTTGT---CACTGAAATAGACA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223737130 19 - 227556264 ---CTCAT---CACTGAGCTAGATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16787856 19 - 220367699 ---CTCAT---CACTGAGCTAGATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82585672 19 + 85787240 ---GTCAT---CACTGAGCTAGATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14266547 22 - 49578535 ATCCTCAG---CACCCAGCTGGATG i calJac3.chr19 C 0 C 0 s mm10.chr1 178837490 25 + 195471971 ATGCCCACAGATTCCTGCCTAGGCA i mm10.chr1 C 0 C 0 s canFam3.chr7 36413475 22 + 80974532 ATCCTCAC---AACAGACCTACAGA i canFam3.chr7 C 0 I 63 e rheMac3.chr1 16973978 65 - 229590362 I a score=26519.000000 s hg38.chr1_KI270759v1_alt 256193 34 + 425601 TCAGAGGTGGT----------CCTGCCTCTTCTC-AGTCTCCATC s panTro4.chr1 225011524 34 + 228333871 TCAGAGGTGGT----------CCTGCCTCTTCTC-AGTCTCCATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226378642 34 - 229942017 TTAGAGTTGGT----------CCTGGGTTTTCTC-GGTCTCCATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140264844 34 - 143122389 TCAGAATTGGT----------TCTGGGTCTTCTC-AGTTTCCATC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223737149 45 - 227556264 TGAGAATTGATCTGGGGTCTATCTGGATCTTCTTCAGCCTCCATC i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16787875 45 - 220367699 TGAGAATTGATCCTGGGTCTATCTGGATTTTCTTCAGCCTCCATC i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82585691 34 + 85787240 TGAGAGTTGAT----------TCTGGATCTTCTT-AGTCTCCGTC i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14266569 24 - 49578535 TGAGAGCTGTT----------CCCGGGTCTTCCC----------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178837515 12 + 195471971 GCAGGCTTGTC----------C----------------------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36413497 63 + 80974532 I e rheMac3.chr1 16973978 65 - 229590362 I a score=6514.000000 s hg38.chr1_KI270759v1_alt 256227 3 + 425601 -CCA s panTro4.chr1 225011558 3 + 228333871 -TCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226378676 3 - 229942017 -CCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140264878 3 - 143122389 -CCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16974043 3 - 229590362 -CTA i rheMac3.chr1 I 65 C 0 s macFas5.chr1 223737195 3 - 227556264 -CTA i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16787921 3 - 220367699 -CTA i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82585726 3 + 85787240 -CTA i chlSab2.chr25 I 1 C 0 s mm10.chr1 178837527 4 + 195471971 CCCA i mm10.chr1 C 0 C 0 e canFam3.chr7 36413497 63 + 80974532 I e calJac3.chr19 14266593 0 - 49578535 C a score=603717.000000 s hg38.chr1_KI270759v1_alt 256230 249 + 425601 AGGCTCTTTACAGCTTTCTGTGGCCTGATTTTCTTGCTGTGGATGCT-----G-AAGGGCACTCTTCAGTGGTTTCTCCCAGGGCCGTTGCGGATTGC---AGCTGTTTCATACCCAGATGACCT-GGGGGGCATCTTCAG-TGTGTGCAGATCAGACTCAGCACT-GATAC-----------TCGTCCTCCAGCCGTACTTTGTCTCCGCGGTG----------GTGCTCAGACTTAAAGCACTTCTCAGCTGTGCT-AGTGGTCC----------CTTCAGAGAACGAATT--------- s panTro4.chr1 225011561 259 + 228333871 AGGCTCTTTACAGCTTTCTGTGGCCTGATTTTCTTGCTGTGCATGCT-----G-AAGGGCACTCTTCAGTGGTTTCTCCCAGGGCCGTTGTGGATTGC---AGCTGTTTCATACCCAGATGACCT-GGGGGGCATCTTCAG-TGTGTGCAGATCAGACTCAGCACT-GATAC-----------TCGTCCTCCAGCCGTACTTTGTTTCCGCGGTGGGACTTTACCGTGCTCAGACTTAAAGCACTTCTCAGCTGTGCT-AGTGGTCC----------CATCAGAGAACGAATT--------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226378679 259 - 229942017 AGGCTCTTTACAGCTTTCTGTGGCCTGATTTTCTTGTTGTGGATGCT-----G-AAGGGCACTTCTCAGTGGTTTCTTCTAGGGCTGTTGTAGATTGT---AGCTGTTTCATACCCAGATGACCT-GGGGGGCAACTTCAG-TGTGCACAGATCAGACTCAGCACT-GGTAC-----------TCGTTCTCCAACCCTACTCTGTCTCCGCGGTGGGAGTTTACCATGCTCAGGCTTAAAGTACTTCTCAGCTGTGCT-AGTGGTCC----------CTTCAGAGAATGAATT--------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140264881 270 - 143122389 AGGCTCTTTACAGCTTTCCATGGCCTGGTTTTCCTGCTGTGGATGCT-----G-AAGGGCACTCTTCAGTGGTTTCTCCCAGAGTGGTTGTGGATTGC---AGCTGTTTCATACCCAGATGACCT-GGGGGGCAACTTCAG-TGTATACAGATCAGACTGAGCACT-GATACTTGTCTTCCAATCGTCCTCCGATCCTACTGTGTCTCCGTGGTGGGACTTTACTGTGCTCAGGCTTAAAGCACTTCTCAGCTGTGCT-AGTGGTCC----------CTTCAGAGAATGAATT--------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16974046 258 - 229590362 AGGTTCTTCACAGCTCTCTGTGGCCTCATTTTCCTGCTGTGGATGCT-----G-AAGGGCATCCTTCAGTGGTTTCTCCCA-GCCCATTGTGGATTGC---AGCTGCTTCATGCCCGGATGGGCT-TGGGGGAAACTTCAG-TGTACCCAGATCAGACTCAGCACT-GATAC-----------TCATCCTCCAGCCCTACTCTGTCTCCACGGAGGGACTTTACCATCCTCAGGCTTAAAGCACTTCTCAGCTGTGCT-AGTGGCAC----------CTTTGGAGAAAGAAGT--------- i rheMac3.chr1 C 0 I 34 s macFas5.chr1 223737198 259 - 227556264 AGGTTCTTCACAGCTCTCTGTGGCCTCATTTTCCTGCTGTGGATGCT-----G-AAGGGCATCCTTCAGTGGTTTCTCCCAGGGCCATTGTGGATTGC---AGCTGCTTCATGCCCGAATGGGCT-GGGGGGAAACTTCAG-TGTACCCACATCAGACTCAGCACT-GATAC-----------TCATCCTCCAGCCCTACTCTGTCTCCACGGAGGGACTTTACCATCCTCAGGCTTAAAGCACTTCTCAGCTGTGCT-AGTGGCAC----------CTTTGGAAAAAGAAGT--------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16787924 260 - 220367699 AGGTTCTTTACAGCTCTCTGTGGCCTCATTTTCCTGCTGTGGATGCT-----G-AAGGGCATCCTTCAGTGGTTTCTCCCAGGGCCATTGTGGATTGC---AGCTGCTTCATGCCTGGATGGGCTgggggggAAACTTCAG-TGTGCCCAGATCAGACTCAGCACT-GATAC-----------TCATCCTCCATCCCTACTCTGTCTCCACGGAGGGACTTTACCATCCTCAGGCTTAAAGCACTTCTCAGCTGTGCT-AGTGGCAC----------CTTTGGAGAACGAAGT--------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82585729 260 + 85787240 AAGCTCTTTACAGCTCTTCACGGCCTCATTTTCCTGCTGTGGATGCT-----GTAAGGGCATCCTTCAGTGGTTTCTCCCAGGGCCATTGTGGATTGC---AGCTGTTTCATGCCCGGATGGGCT-GGGGGGAAACTTCAG-TGTGCCCAGATCAGACTCAGCACT-GATAC-----------CCATTCTCCAGCCCTACTCTGTCTCCGCGGAGGGACTTTACAGTCCCCAGGCTTAAAGCACTTCTCAGCTGTGCT-AGTGGCAC----------CTTTGGAGAATGAAGT--------- i chlSab2.chr25 C 0 I 34 s calJac3.chr19 14266593 235 - 49578535 ----------TAACTCTCTGTGGCCTTATTCTTCTGTTGCGGATGCT-----G-AA-GGCACCC-TCAGTGGTTCCCCCGA-GGCCGTTGTGGATTGCCATGGATGTTTCATGCCCAGATGGCCC-AGGGGGCAACTTCAG-TGTGTCCAGATCAGACTCTGCAGT-CACAC-----------TC--------GCCCTACTCTGTCTCTGCCCTG----------GTGGTCAG---CAAAGCGCTT---AGCTGCACT-AGTGGCCCCGAAGAGTTTCTTGAATGGTTGTAGT--------- i calJac3.chr19 C 0 I 6 s mm10.chr1 178837531 212 + 195471971 GGG--CTTCCCAACCCTCTGCAA-CTCACCCTAGTACTTCAGATGCTTTGCAG-AACTGCATC---------TGTCTCCCTAGGCAACTGCACATCAC---TGGTTCTT--TGCCTGGAT----------------------------CATACAAGACT---------ACAG-----------TCATTCCCCGGTCTCAAACAGTCTC-----TTAGAATTGGCTATGGTCAGGCTGGAAGCATTTCTCCTTTGTACCAAGTGCCCA----------CCTCCAACAACAAAGC--------- i mm10.chr1 C 0 I 31 s canFam3.chr7 36413560 230 + 80974532 AGGGCTTGTCCAGCTACCTGTGACCTCGCCCTCATGCTACATGGGCT-----G--------------------CTTCCCCAGCGCTGCTGT-GATTGC-------CTTCCATGCCTGGACGGCTA-ACGGAGCAAGTGCAGAAGGGGCCAGATCACAGTGGGGACCAGATCC-----------TC----------TCTGCTCTGTGTCCTCTGCTGGGC------ATGATGTGTGCCACCCCACTTCCCAGCCATACC-ATTGGCCA----------TCTCCAAGAACAAAGCCCAGAGATT i canFam3.chr7 I 63 C 0 a score=-2089.000000 s hg38.chr1_KI270759v1_alt 256479 5 + 425601 --ATGCT s panTro4.chr1 225011820 5 + 228333871 --ATGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226378938 5 - 229942017 --ATGCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140265151 5 - 143122389 --ATGCT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223737457 5 - 227556264 --GAGTT i macFas5.chr1 C 0 I 29 s papAnu2.chr1 16788184 5 - 220367699 --GAGTT i papAnu2.chr1 C 0 I 29 s calJac3.chr19 14266834 4 - 49578535 ---AGCC i calJac3.chr19 I 6 I 1 s mm10.chr1 178837774 5 + 195471971 --GTGCT i mm10.chr1 I 31 I 1 s canFam3.chr7 36413790 5 + 80974532 AGGAA-- i canFam3.chr7 C 0 C 0 e rheMac3.chr1 16974304 34 - 229590362 I e chlSab2.chr25 82585989 34 + 85787240 I a score=668014.000000 s hg38.chr1_KI270759v1_alt 256484 207 + 425601 GAGGCAGAGAGGGACCTGGGGAGGGTAGGGAAGGTCACAAATTAAACAGCAGATTAGAGGACAGA----AATTCGGTTTGTGGCTTTAATATTTTATACTCAGTATGACAGGCAGACTCTTC--------AAAAAAACATAACCTAGTGGCCC-AAATCGCAA---TTTTACGTTATACTTTCAATATAGGAGGACCCTCACATTGCTTAAAAGGGGTCTTCA s panTro4.chr1 225011825 207 + 228333871 GAGGCAGAGAGGGACCTGGGGAGGGTAGGGAAGGTCACAAATTATACAGCAGATTAGAGGACAGA----AATTCGGTTTGTGGCTTTAATATTTTATACTCAGTATGACAGGCAGACTCTTC--------AAAAAAACATAACCTAGTGGCCC-AAATCGCAA---TTTTACGTTATACTTTCAATATAGGAGGACCCTCACATTGCTTAAAAGGGGTCTTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226378943 208 - 229942017 GAGGCAGAGAAGGACTTGGAGAGGGTAGGGAAGGTCACAAATTATACAGCAGATTAGAGGACAGA----AATTCGGTTTGTGGCTTTAATATTTTATACTCAGTATGACAGGCAGACTCTTC-------AAAAAAAACGTAACCTAGTGGCCC-AAATCGCAA---TTTTACGTTATGCCTTCAATATAGGAGGACCCTCACATTGCTTAAAAGGGGTCTTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140265156 207 - 143122389 GAGGCAGAGAGGGACTTGGGGAGGGTAGGGAAGGTCACAAATTATACAGCAGATTAGAGGACAGA----AATTCGATTTGTGGCTTTAATGTTTTATACTCAGTATGAGAGGCAGACTCTTC--------AAAAAAACATAACCTAGTGGCCC-AAATCGCAA---TTTTACATTATACTTTCAATATAGGAGGACCCTCACATTGCTTAAAAGGGGTTTTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16974338 207 - 229590362 GAGGCAGAGAGGGACTTGGGGAGGGCGGGGAAGGTCACAAATTATACAGAGGATTAGAAGACAGA----AATTCGGTTTGTGGCTTTAATGTCTTATACTCAGTATGACAGGCAGACTCTTC--------CAAAAAACATAACCTAGGGGCCC-AAATCGCAA---TTTTAGGTTATACTTTCAATCTAGGAGGACCCTCACATTGCTTAAAAGGGGTCTTCA i rheMac3.chr1 I 34 C 0 s macFas5.chr1 223737491 207 - 227556264 GAGGCAGAGAGGGACTTGGGGAGGGCGGGGAAGGTCACAAATTATACAGAGGATTAGAAGACAGA----AATTCGGTTTGTGGCTTTAATGTCTTATACTCAGTATGACAGGCAGACTCTTC--------CAAAAAACATAACCTAGGGGCCC-AAATCGCAA---TTTTAGGTTATACTTTCAATCTAGGAGGACCCTCACATTGCTTAAAAGGGGTCTTCA i macFas5.chr1 I 29 C 0 s papAnu2.chr1 16788218 207 - 220367699 GAGGCAGAGAGGGActtggggagggcagggaaggtcACAAATTATACAGAGGATTAGAAGACAGA----AATTCGGTTTGTGGCTTTAATGTCTTATACTCAATATGACAGGCAGACTCTTC--------CAAAAAACATAACCTAGGGGCCC-AAATCACAA---TTTTAGGTTATACTTTCAATCTAGGAGGACCCTCACATTGCTTAAAAGGGGTCTTCA i papAnu2.chr1 I 29 C 0 s chlSab2.chr25 82586023 206 + 85787240 GAGGCAGAGAGGGACTTGGGGAGGGCAGGGAAGGTCACAAATTATACAGAGGATTAGAAGACAGA----AATTCGGTTTGTGGCTTTAATGTCTTATACTCAATATGACAGGCAGACTCTTC--------C-AAAAACATAACCTAGTGGCCC-AAATCGCAA---TTTTAGGTTATACTTTCAATCTAGGAGGACCCTCACGTGGCTTAAAAGGGGTCTTCA i chlSab2.chr25 I 34 C 0 s calJac3.chr19 14266839 205 - 49578535 GAGGCAGAGAGAGACTAGGGGAGGATAGGAAAGGTCACAAATTATACAGAGGATTAGAGGAGAGG----AATTCAGTTTGTGGCTTTAATATTTTATACTTCACAGGAGAGGT--ACTCTTC---------AAAAAACATAACCTAGTTGTCC-AAATCACAA--TTTTTAGGTTATACTTTCAATGTAGGAGGACCCTCACTTTGCTTAAAAGGGGTCTTCA i calJac3.chr19 I 1 C 0 s mm10.chr1 178837780 147 + 195471971 GGGGCAGAGAGAAACT--AAGAGGAGGAGGAAGGACAGGAATCAGTATCTAGCTCA----ACAAT----GGTGTGATTTG------------CTTATATTCACTGTGGAAAGCAGACTCTTC---------AAAGAGCAAAACTTCAGGA---------GAAA-------------------------AGAAGGAGTCTTCCT---------GGGAGTCTC-- i mm10.chr1 I 1 C 0 s canFam3.chr7 36413795 210 + 80974532 -GGGCAGAGGGG----TCGGCATGGGGGCGAAGGTCAAAAATCCTACAGAG----AGAGGAGAGAGGCTAATTTGGTTTATGACTTTAACCTTTTGCACTTAATGTGACAGGC----TCTTCaaaaaaaaaaaaaaaaaaaaCCTCATGGCAAGGAATGGCGAAGTTTTTAGGGTGTACCCTTAAAATAAGAAGACCCTCATGTTGCTTAAAAGGGATCTTCA i canFam3.chr7 C 0 I 196 a score=576055.000000 s hg38.chr1_KI270759v1_alt 256691 194 + 425601 GGGAGAAATTTACC-CAAAATTTCATG---------------CTTGGCTCCGTGGTGACGGCACATCCTCACTCTGAGAACCAGGACC--GGCCTCGGGAGTCCAG--GTTCTGTTCCCAGTTTGTATGCACACCGATTTCCCCACTGTC--TGTCACAACC---------AGTCAACTTCCCATGTGTTA-ACAGTTACTGAATCTACCTGTCCGCACGTGGCCA s panTro4.chr1 225012032 194 + 228333871 GGGAGAAATTTACC-CAAAATTTCACG---------------CTTGGCTCCGTGGTGACGGCACATCCTCACTCTGAGAACCAGGACC--GGCCTCGGGAGTCCAG--GCTCTGTTCCCAGTTTGTATGCACGCCGATTTCCCCACTGTC--TGTCACAACC---------AGTCAACTTCCCATGTGTTA-ACAGTTACTGAATCTACCTGTCCGCACGTGGCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226379151 194 - 229942017 GGGATAAATTTACC-CAAAATTTCACT---------------CTTGGCTCCGTGGTGACGGCACATCCTCACTCTGAGAACCAGGACC--GGCCTCGGGAGTCCAG--GCTCTGTTCCTGGTTTGTATGCACACCGATTTCCCCACTGTC--TGTCACAAGC---------AGTCAACTTCCCATGTCTTA-ACAGTTACTGAATCTACCTGTCTGCACGTGGCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140265363 194 - 143122389 GGGAGAAATGTACC-CAAAATTTCACG---------------CTTGGCTCCGTGGCGATGGCACATCCTCACTCTGAGAACCAGGGCC--GGCCTCGGGAGTCCAG--GCTCTGTTCCCTGTTTGTATGCACACCAATTTCCCCACTGTC--TGTCACAACC---------AGTCAACTTCCCACGTGTTA-ACAGTTACTGAATCTACCTGTCCGCACGTGGCCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16974545 197 - 229590362 GGGAGAAATTTACC-CCAAATTTCACG---------------CTTGGCTCCGTGGTGACGGCACGTCCTCACTCTGAGAACCAGGACC-AGGCCTCGGGATTCCAGGCGCGCTGTTCCCAGTTTTTACGCACGCCCATTTCCCCACTGTC--TGTTACAACC---------GGTCAACTTCCCGTGTGTTA-ACAGTTACTGAATCTGCCTGTCCACACGTGGTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223737698 197 - 227556264 GGGAGAAATTTACC-CCAAATTTCACG---------------CTTGGCTCCGTGGTGACGGCACGTCCTCACTCTGAGAACCAGGACC-AGGCCTCGGGATTCCAGGCGCGCTGTTCCCAGTTTTTACGCACGCCCATTTCCCCACTGTC--TGTTACAACC---------CGTCAACTTCCCGTGTGTTA-ACAGTTACTGAATCTGCCTGTCCGCACGTGGTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16788425 193 - 220367699 GGGAGAAATTTACC-CCAAATTTCACG---------------CTTGGCTCCGTGGTGACGGCACGTCCTCACTCTGAGAACCAGGACC-AGTCCTCGGGATTCCAGGCGCGCTGTTCCCAGTTTTTACGCACGCGCATTTCCCCACTGTC--TGTTACAACC---------GGTCAACTTCCCGTGTGTTA-ACAGTT----GAACTGCCTGTCCGCACGTGGTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82586229 193 + 85787240 GGGAGAAATTTACC-CCAAATTTCACG---------------CTTGGCTCCGTGGTGACGGCACGTCCTCA--CTGAGAACCAGGACC-AGACCCCGGGATTCCAG--GCACTGTTCCCAGTTTCTACGCACGCCCATTTCCCCACTGTC--TGTTACAACC---------GGTCAACTTCCCGTGTGTTA-ACAGTTACTGAATCTGCCTATCCGCATGTGGTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14267044 204 - 49578535 GGGAGAAATTGACCAAAAAAATTAGCA---------------GTTGGCTCTGTGGTGACAGCACATTCTTACACTGAGAACCAGGACC-AGGCCTTGGGATCCCAG--GCTCTGTTCCCAGCTTTTATGCACGCCGA-TTCCCGACTGGC--TGTCACAACCTGGTGAGAAAGTCAGCTTTCCCGGTGTTA-ACAGTCACCGGATCTACCTGTCTGCACGTGGCCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178837927 181 + 195471971 -GGGAGGATTTAGC-AAAGATCTTA-------------------TGACGCTGCTGTGTTGGTTCATTCC---------ACCCAGGAATGGGGGCTTGGG--TCCTGACAATCTGTTCTGAATTT-TATACACAATAGTTGTCCCTATGGTGGTATGTTGGCC---------AGTCACCTTC---TGTATAATACTGTTTCTCAATACACCTGTTGGCCTGTGGCCA i mm10.chr1 C 0 I 435 s canFam3.chr7 36414201 199 + 80974532 GGGAGATATTTACC-CAAAATCTCATAATCATGAGATTATGTCTCATGTCTGTGGTGTTGGCATGTTCTCACTGTGCGAGCCAGGCTC-------CAGGATTCCAG--GCTTTGTTCCCA-TTTCTATGTGC----AGATCCCCACAGTC--TCTCAGGACC---------AATCCATTCCCCCTGTAAAC-ACAGGTAATGAATCTACCTCTTTGCCTGCCACTG i canFam3.chr7 I 196 C 0 a score=330559.000000 s hg38.chr1_KI270759v1_alt 256885 106 + 425601 AGCCCCG---C-CCCCCCCTTCCCCCATGCTCTTCTCTCTGCCTGGCCAACTCCTCAATCTTGGCAAAGTCCTTCAGAACCCTT-GG-GTAGTGTGAGTTACCTTCCTTTGT s panTro4.chr1 225012226 106 + 228333871 AGCCCCA---C-CCCCCCCTTCCCCCATGCTCTTCTCTCTGCCTGGCCAACTCCTCAATCTTGGCAAAGTCCTTCAGAACCCTT-GG-GTAGTGTGAGTTACCTTCCTTTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226379345 105 - 229942017 AGCCCCG-----CCCCCACTTCCCCCATGCTCTTCTCTCTGCCTGGCCAACTCCTCGATCTTGGCAAAGTCCTTCAGAACCCTT-GG-GTAGTGTGAGTTACCTTCCTTTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140265557 110 - 143122389 AGCCCCGCCCC-CCCCCCCTTCCCCCATGCTCTTCTCTCTGCCTGGCCAACTCCTCAATCTTGGCAAAGTCCTTCAGAACCCTTGGG-GTGGTGTGAGTTACCTTCCTTTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16974742 107 - 229590362 AGCCCCC---CGCCCCCCCTTCCCCCATGCTCTTCTCTCTGTCTGGCCAACTCCTCAATTTTGGCAAAGTCCTTCAGAGCCCTT-GG-GTAGTGTGAGTTACCTTCCTTTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223737895 107 - 227556264 AGCCCCC---TGCCCCCCCTTCCCCCATGCTCTTCCCTCTGTCTGGCCAACTCCTCAATTTTGGCAAAGTCCTTCAGAGCCCTT-GG-GTAGTGTGAGTTACCTTCCTTTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16788618 107 - 220367699 AGccccc---cgcccccccttcccccatgctcttctctCTGTCTGGCCAACTCCTCAATTTTGGCAAAGTCCTTCAGAGCCCTT-GG-GTAGTGTGAGTTACCTTCCTTTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82586422 107 + 85787240 AGCCCCC---CGCCCCCGCTTCCCCCATGCTCTTCTCTCTGTCTGGCCAACTCCTCAATTTTGGCAAAGTCCTTCAGAGCCCTT-GG-GTAGTATGAGTTACCTTCCTTTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14267248 103 - 49578535 AGACCCC---A----CACCATCCCCCACGCTCTTCTCTCTGCCTGGCCAACTCCTCAGTCTTGGCAAATTCCTTCAGATCCCGT-GA-GTCATGCGAGTCACCTTCCTTTGT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36414400 103 + 80974532 AGATGCG---G---GCACCTTTACCTGAGCTCTGCTCCC--CCTGGCTTACCCCTTGTTCTTGGAGAAGTCCTTGAGAGCCCTT-GGTAGAGTGTGAGTCACCCTGGTCTGT i canFam3.chr7 C 0 I 44 e mm10.chr1 178838108 435 + 195471971 I a score=229566.000000 s hg38.chr1_KI270759v1_alt 256991 80 + 425601 ATAGAATCTGAAAAATCATTGCCCtttttttattagagtcaggatctcattgctctgtcacccaggctggagggcagtgg s panTro4.chr1 225012332 79 + 228333871 ATAGAATTTGAAAAATCATTGCCCttttttt-ttagagtcaggatctcattgctctgtcacccaggctggagggcagtgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226379450 80 - 229942017 ATAGAATTTGAAAAATCATTGCCCttttttttttagagtcaggatctcattgctctgtcacccaggctggagtgcagtgg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140265667 80 - 143122389 ATAGAATTTGAAAAATCATTGCCtttttcttcttagagtcaggatctcattgctctgtcacacaggctggagtgcagtgg i nomLeu3.chr5 C 0 M 100 s rheMac3.chr1 16974849 79 - 229590362 ATAGAATTTGAAAAATCATTGCCCttttttt-ttagagtcaggatctcattgctgtgtcacccaggctggagtgcggtgg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223738002 79 - 227556264 ATAGAATTTGAAAAATCATTGCCCttttttt-ttagagtcaggatctcattgctgtgtcacccaggctggagtgcggtgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16788725 79 - 220367699 ATAGAATTTGAAAAATCATTGCccttttttt-ttagagtcaggatctcattgctgtgtcacccaggctggagtgcggtgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82586529 79 + 85787240 ATAGAATTTGAAAAATCATTGCCCtttttat-ttagagtcaggatctcattgctctgtcacccaggctggagtgcagtgg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14267351 79 - 49578535 ATAGCATTGGAAAAATTAGTGCCCCTTCAtt-ttagagtcaggatctcactggtctgtcacacaggctagactgcagtgg i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414503 44 + 80974532 I a score=499366.000000 s hg38.chr1_KI270759v1_alt 257071 230 + 425601 tgcagtcatagcttactgcagcctcaaactccggcaggtctcaagtgatcctcctgcctcagcctcccgagtagctgggactataggcatgcgtcaccatgcctgactaattgtgttattctttgtaagagatgggctctcactgtgttgctgaggctggtctcgaactcctggctttaagggaatcctcctgcctcagcctcccaaagtgatagaattacaagtgtaag s panTro4.chr1 225012411 230 + 228333871 tgcaatcatagcttactgtagcctcaaactccggtaggtctgaagtgatcctcctgcttcagcctcctgagtagctgggactataggcatgcgtcaccatgcctgactaattgtgttattctttgtaagagatgggctctcactgtgttgctgaggctggtctcgaactcctggctttaagggaatcctcctgcctcagcctcccaaagtgatagaattacaagtgtaag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226379530 230 - 229942017 tgcaatcatagcttactgcagcctcaaactccggcagatctcaagtgatcctcctgcctcagcctcctgagtagctgggactgtaggcatgtgtcaccatgcctgactaattgtgttattctttgtaagagatgggctctcactgtgttgctgaggccagtctcgaactcctggctttaagggaatcctcctgcctcagcctcccaaagtgatagaattacaagtgtaag i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16974928 225 - 229590362 tgcaatcatagctcactgcagcctcgaactcccgcagggctcaagtgatcctcctgcctcagcctcctgagtagctgggactataggcatgtgtcaccatgcctg----actgtgttattctttgtaagggatgggccttcactgtgctggccaggctggtctcaaactcccggccttaaggg-atcctcctgcctcagcctcccaaagtgatggaatgacaagtgtaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223738081 225 - 227556264 tgcaatcatagctcactgcagcctcgaactccagcagggctcaagtgatcctcctgcctcagcctcctgagtagctgggactataggcatgtgtcaccatgcctg----actgtgttattctttgtaagggatgggccttcactgtgctggccaggctggtctcaaactcccggccttaaggg-atcctcctgcctcagcctcccaaagtgatggaatgacaagtgtaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16788804 225 - 220367699 tgcaatcatagctcactgcagcctcaaactccagcagggctcaagtgattctcctgccttagcctcctgagtagctgggactataggaatgtgtcaccatgcctg----actgtgTTATTCTTTGTAAGGGATGGGccttcactgtgttggccaggctggtctcaaactcccggccttaaggg-atcctcctgcctcagcctcccaaagtgatggaatgaCAAGTGTAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82586608 229 + 85787240 tgcaatcatagctcactgcagcctcgaactccagcaggactcaagtgatcctcctgcctcagcctcctgagtagctgggactataggcgcgtgtcaccatgcctgactaactgtgttattctttgtaagggatgggccttcactgtgttggccaggctggtttcaaactcccggtcttaaggg-atcctcctgcctcagcctcccaaagtgatggaatgacaagtgtaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14267430 209 - 49578535 cgcaatcacagctcaccgcagtctcaaactccagcgggactcaagtgatcctcctgcctcagcctcctgagtagctgggactacaggcatgtgtcaccatgcctg-ctcatggtgttattctttgtaagagatgagctctcgccgtgttgcccaggctggtctcgaa--------------------ctcctgcctcagcctcccaaagtgatggaattataagtgtgag i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414503 44 + 80974532 I e nomLeu3.chr5 140265747 100 - 143122389 M a score=128308.000000 s hg38.chr1_KI270759v1_alt 257301 39 + 425601 ccaccacacTTGTCCATCATtgccttttaatctttgcat s panTro4.chr1 225012641 39 + 228333871 ccaccacacTTGTCCATCATtgccttttaatctttgcat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226379760 39 - 229942017 ccaccacacttgtccATCATTGCCTTTTAATCTTTGCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140265847 39 - 143122389 CCACCACACTTGTCCATCATtgccttttaatctttgcat i nomLeu3.chr5 M 100 C 0 s rheMac3.chr1 16975153 39 - 229590362 ccaccacacTTGTCCATCATtgccttttaatctttgcat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223738306 39 - 227556264 ccaccacacTTGTCCATCATtgccttttaatctttgcat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16789029 39 - 220367699 CCACCACACTTGTCCATCATTGCCTTTTAATCTTTGCAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82586837 39 + 85787240 ccaccacacTTGTCCATCATtgccttttaatctttgcat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14267639 39 - 49578535 ctgccacCCTTGTCCATCATCGCCTTTTAATCTTTGCAT i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414503 44 + 80974532 I a score=612660.000000 s hg38.chr1_KI270759v1_alt 257340 191 + 425601 cctgcc-acctccccagcacagccagcataggagccggcacttagtacatgtttgtttggggaatgaatgTGAGGTCACT---AGTCAATGATTCTGAAATGAGTCTATTGAAGGTGGAAACCAGCACAATTCAAATGCTTTGCGTTAAATGCCAGTCAGTG------TCTCTTCCCAAAGA-------CCCCCACTGAACCCATCAG s panTro4.chr1 225012680 191 + 228333871 cctgcc-acctccccagcacagccagcataggggccggcacttagtacatgtttgtttggggaatgaatgTGAGGTCACT---AGTCAATGATTCTGAAATGAGTCTATTGAAGGTGGAAACCAGCACAATTCAAATGCTTTGCATTAAATGCCAGTCAGTG------TCTCTTCCCAAAGA-------CCCCCACTGAACCCATCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226379799 191 - 229942017 CCTGCC-ACCtccccagcacagccagcataggagccggcacttagtacctgtttgtttggggaatgaatgTGAGGTCATC---AGTCAATGATTCTGAAATGAGTCTATTGAGGGTGGAAACCAGCACAATTCAAATGCTTTGCATTAAATGCCAGTCAGTG------TCTCTTCCCGAAGA-------CCCCCACTGAGCCCATCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140265886 190 - 143122389 cctgcc-acctcccctgcacagccagcataggagctggcacttagtacatgtttgtttggggaatgaatgTGAGGTCATC---AGTCAATGATTCTGAAATGAGTCTATTGAAGGTGG-AACCAGCACAATTCAAATGCTTTGCGCTAAATGCCTGTCAGTG------TCTCTTCTTGAAGA-------CCCCCACTGAGCCCATCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16975192 191 - 229590362 cctgcc-atctccctggcacagccagcacaggagccggcacttagtacatgtttgtttggggaatgaacgaGAGGTCATC---AGTCAATGATTCTGAAACGGGTCTACTGAAGGTGGAAACCAGCACAATTCAAATGCTTTGCATTAAATGCCAGTCAGCA------TGTCTTCCTGAAGA-------CTCCCCCTGAGCCCATCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223738345 191 - 227556264 cctgcc-atctccctggcacagccagcacaggagccggcacttagtacatgtttgtttggggaatgaacgaGAGGTCATC---AGTCAATGATTCTGAAACGGGTCTACTGAAGGTGGAAACCAGCACAATTCAAATGCTTTGCATTAAATGCCAGTCAGCA------TGTCTTCCTGAAGA-------CTCCCCCTGAGCCCATCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16789068 191 - 220367699 CCTGCC-ATCTCCCTGGCACAGCCAGCACAGGAGCCGGCACTTAGTACATGTTTGTTTGGGGAATGAACGAGAGGTCATC---AGTCAATGATTCTGAAACGGGTCTACTGAAGGTGGAAACCAGCACAATTCAAATGCTTTGCATTAAATGCCAGTCAGCA------TGTCTTCCTGAAGA-------CTCCCCCTGAGCCCCTCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82586876 191 + 85787240 cctgcc-atctccctggcacagccagcacaggagccggcacttagtacatgtttgtttggggaatgaacaaGAGGTCATC---AGTCAATGATTCTGAAACGGGTCTACTGAAGGTGGAAACCAGCACAATTCAAATGCTTTGCATTAAATGCCAGTCAGAA------TGTCTTCCTGAAGA-------CTCCCCCTGAGCCCATCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14267678 197 - 49578535 TGTGCC-ACCTCCCCGGCACAGCCAGCACCCGAGCCGGCACTGAGCACCTGTTTGCTTGGAGAATGAATGTGAGGTCATT---AGTAAATGATTCTGAAATGAGTCTACCGAAGGTGGAAAGGAGCACAGTTCAAATGCTTTGCATTACGTGCCAGTCAGCGTCTCTTTGTCTTCCTGGAGA-------CACCCACTGAGCTCATCAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36414547 200 + 80974532 CCTGCCTGACTCCCCCCCACACCCAGCAGGACACCTGGATTACAGTATGTGTGTGTTTGGGG-ACAAATGTGAGGTTATTGTGGGGAGGTGATTCTGAAAGACATCTATTAAAGGTAGAAATCAACAAAATTCAGATGCTTCATG-TAAATGCTATTCAGCA------TCTCTTCCTGAAGATACACCCCCATCCCTGCCCCTTTCAG i canFam3.chr7 I 44 I 2 e mm10.chr1 178838108 435 + 195471971 I a score=75353.000000 s hg38.chr1_KI270759v1_alt 257531 31 + 425601 ATGTAAAATCCCCCATTTTATCACCGAACAA s panTro4.chr1 225012871 31 + 228333871 ATGTAAAATCCCCCATTTTATCACCGAACAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226379990 31 - 229942017 ATGTAAAATGCCCCATTTTATCACTGAACAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140266076 31 - 143122389 ATGTAAAATGCCCCATTTTATCACTGAACAA i nomLeu3.chr5 C 0 I 455 s rheMac3.chr1 16975383 31 - 229590362 ATGTAAAATCCCCCATTTTATCACCGAGCAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223738536 31 - 227556264 ATGTAAAATCCCCCATTTTATCACTGAGCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16789259 31 - 220367699 ATGTAAAATCCCCCATTTTATCACCCAGCAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82587067 31 + 85787240 ATGTAAAATCCCCCATTTTATCACCGAGCAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14267875 16 - 49578535 ATGTAAAATCCTTCGT--------------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414747 2 + 80974532 I a score=52025.000000 s hg38.chr1_KI270759v1_alt 257562 20 + 425601 CCTGTttccacccatttccc s panTro4.chr1 225012902 20 + 228333871 CCTGTTTCCACCCATTTCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226380021 20 - 229942017 CCTGTTTCCACCCATTTCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140266562 20 - 143122389 CCTGTTTCCACCCATTTCTC i nomLeu3.chr5 I 455 C 0 s rheMac3.chr1 16975414 20 - 229590362 CCTGTTTCCACCCATTTCTC i rheMac3.chr1 C 0 I 71 s macFas5.chr1 223738567 20 - 227556264 CCTGTTTCCACCCATTTCTC i macFas5.chr1 C 0 I 281 s papAnu2.chr1 16789290 20 - 220367699 CCTGTTTCCACCCATTTCTC i papAnu2.chr1 C 0 I 144 s chlSab2.chr25 82587098 20 + 85787240 CCTGTTTCCACCCATTTCTC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414747 2 + 80974532 I e calJac3.chr19 14267891 0 - 49578535 C a score=38744.000000 s hg38.chr1_KI270759v1_alt 257582 16 + 425601 ttattcactaaacaac s panTro4.chr1 225012922 16 + 228333871 TTATTCACTAAACAAC i panTro4.chr1 C 0 I 761 s ponAbe2.chr1 226380041 16 - 229942017 TTATTCACTGAACAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140266582 16 - 143122389 TTATTCGCTAAACAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16975505 16 - 229590362 TTATTCACTAAACAAC i rheMac3.chr1 I 71 C 0 s macFas5.chr1 223738868 16 - 227556264 TTATTCACTAAACAAC i macFas5.chr1 I 281 C 0 s papAnu2.chr1 16789454 16 - 220367699 TTATTCACTAAACAAC i papAnu2.chr1 I 144 C 0 s chlSab2.chr25 82587118 16 + 85787240 TTATTCCCTAAACAAC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414747 2 + 80974532 I e calJac3.chr19 14267891 0 - 49578535 C a score=68917.000000 s hg38.chr1_KI270759v1_alt 257598 24 + 425601 ccgtttccacccatttctcttgtt s panTro4.chr1 225013699 24 + 228333871 ccgtttccacccatttctcttgtt i panTro4.chr1 I 761 C 0 s ponAbe2.chr1 226380057 24 - 229942017 CTGTTTCCACCCATTTCCCTTGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140266598 24 - 143122389 CCGTTTCCACCCATTTCTCTTGTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16975521 24 - 229590362 CTGTTTCCACCCATTTCTTTTGTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223738884 24 - 227556264 CTGTTTCCACCCATTTCTTTTGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16789470 24 - 220367699 CTGTTTCCACCCATTTCTTTTGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82587134 24 + 85787240 CTGTTTCCACCCATTTCTCTTATT i chlSab2.chr25 C 0 I 385 s calJac3.chr19 14267891 21 - 49578535 ---TTTCCACCCATTTCCCTTATT i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414747 2 + 80974532 I a score=995102.000000 s hg38.chr1_KI270759v1_alt 257622 353 + 425601 ccttcttattgcagtgggggacgtgtctttgccttctttcaagggttaatgtttccaagtgggttctatcttctcaaggatcactggtctt-tcgcatataccctcttgctcccgaatcattaagaactcctgcccattggatgatgttgctgtatctccaattatattttgaaactttctccctctcacttactcctccacgtgtcccatttctctgccttcttaatggccacttctcaaaCACATGGCTGACAGATTCCGGAGGCCTTCAACTCCCACCTATGAAG-CAGCCAGTGGCCTCGGGAGTGGGGCTGCTTGAGACTGTGGGaacgatgttttcgttaagaatggac s panTro4.chr1 225013723 353 + 228333871 ccttcttattgcagtgggggacgtgtctttgccttctttcaagggttaatgtttccaagtgggttctatcttctcaaggatcactggtctt-tcgcatataccctcttgctcctgaatcattaagaactcctgcccattggatgatgttgctgtatctccaattatattttgaaactttctccctctcacttactcctccacgtgtcccgtttctctgccttcttaatggccacttctcaaaCACATGGCTGACAGATTCCGGAGGCCTTCAACTCCGACCTCTGAAG-CAGCCAGTGGCCTCGGGAGTGGGGCTGCTTGAGACCGTGGGaacgatgttttcgttaagaatggac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226380081 354 - 229942017 CCTCCTTATTACAGTGGGGGACGTGTCTTTGCCTTCTTTCAAGGGTTAATGTTTCCAAGTTGGTTCTATCTTCTCAAGGATCACTGGTCTTCTCGCATACACCCTCTTGCTCCTGAATCATTAACAACTCCTGCTCATTAGATGATGTTGCTGTATCTCCAATTATATTTTGAAACTTTCTCCCTCTCACATACTCCTCCACGTGTCCCATTTCTCTGCTTTCTTAATGGCCACTTCTCAAACACGTGGCTGATAGATTCCGGAGGCCTTCAACTCCGACCTGTGAAG-CAGCCAGTGGCCTCAGGAGTGGGGCTGCTTGAGACCGTGGGaatgatgttttcgttaagaatggac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140266622 353 - 143122389 CCTTCTTATTGCAGTGGGGGATGTGTCTTTGCCATCTTTCAAGGGTTGATTTCTCCAGGTTGGTTCTGTCTCCTCCAGGATCACTGGTCTT-TCGCACATACCCTCTTGCACCTGAATGATTAAGAACTCCTGCTCATTAGATGATGTTTCTGTATCTCCAATTATCTTTTGAAACTTTCTCCCTCTCACATACTCCTCCACGTGTGCCATTTCTCTGCTTTCTTAATGGCCCCTTCTCAAACACGTGGCTGATAGATTCCGGAGGCCTTCAGCTCCGGCCTGTGAGG-CAGCCAATGGCCTCGGGAGTAGGGCTGCTAGAGACCATGGGaacgatattttcgttaagaatggac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16975545 354 - 229590362 CCTTCTTATTGCAGTGGGGGACGTGTCTTTCCCTTCTTTCAAGGGTTCATGTTTCCGGGTTGGTTCTgtcttctcagggatcatcggtctt-ttgcatataccctcttgctcctgaatcattaagaactcctgctcattagatgatgttgctgcatctccagttacactttgaaagtttctccctctcacacattcctccacatgtcccatttctctgctttcttcatagccacttctcaaaCACACAGCTGATAGATTCCCGAGGCCCCTAACTCCGACCTGTGAAGACAGCCAGTGGCCTCGGGAGTGGGGCTGCTTGAGACCATGGGAAGGACGTTTTCGTTAAGAATGGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223738908 354 - 227556264 CCTTCTTATTGCAGTGGGGGACGTGTCTTTCCCTTCTTTCAAGGGTTCATGTTTCCGGGTTGGTTCTGTCTTCTCAGGGATCATTGGTCTT-TTGCATATACCCTCTTGCTCCTGAATCATTAAGAACTCCTGCTCATTAGATGATGTTGCTGCATCTCCAGTTACACTTTGAAAGTTTCTCCCTCTCACACATTCCTCCACATGTCCCATTTCTCTGCTTTCTTCATAGCCACTTCTCAAACACACAGCTGATAGATTCCGGAGGCCCCTAACTCCGACCTGTGAAGACAGCCAGTGGCCTCGGGAGTGGGGCTGCTTGAGACCATGGGAAGGACGTTTTCGTTAAGAATGGAC i macFas5.chr1 C 0 I 291 s papAnu2.chr1 16789494 354 - 220367699 CCTTCTTATTGCAGTGGGGGACGTGTCTTTCCCTTCTTTCAAGGGTTCATGTTTCCGGGTTGGTTCTGTCTTCTCAGGGATCATTGGTCTT-TTGCATATACCCTCTTGCTCCTGAATCATTAAGAACTCCTGCTCATTAGATGATGTTGCTGCATCTCCAGTTATACTTTGAAAGTTTCTCCCTCTCACACATTCCTCCACATGTCCCATTTCTCTGCTTTCTTCATAGCCACTTCTGAAACACACGGCTGATAGATTCTGGAGGCCCCTAACTCCGACCTGTGAAAACAGCCAGTGGCGTCGGGAGTGGGGCTGCTTGAGACCATGGGAAGGACGTTTTCGTTAAGAATGGAC i papAnu2.chr1 C 0 I 293 s chlSab2.chr25 82587543 354 + 85787240 CCTTCTTATTGCAGTGGGGGACGTGTCTTTCCCTTCTTTCAAGGGTTCATGTTTCCGGGTTGGTTCTGTCTTCTCAGGGATCACTGGTCTT-TTGCATATACCCTCTTGCTCCTGGATCATTAAGAACTCCTGCTCATTAGATGATGTTGCTGCATCTCCAGTTATACTTTGAAAGTTTCTCTCTCTCACACATTCCTCCACAAGTCCCATTTGTCTGCTTTCTTCATAGCCACTTCTCAAACACATGGCTGATAGATTCCGGAGGCCTTCAACTCCGACCTGTGAAGGCAGCCAGTGACCTCGGGAGTGGGGCTGCTTGAGACCATGGGAAGGACGTTTTTGTTAAGAATGGAC i chlSab2.chr25 I 385 I 399 s calJac3.chr19 14267912 352 - 49578535 CCTTCTTATCGCCGTGGGGT-CATGTCTTCGCCTTCTTTCAAGGCTTCATGTTTCCGAGTTGGTTCTATCTTCTCCCAGATCGTTGGTCTT-CTGCGAATACCCTCTTGCTCCTGAATCATAAAGAACTCCTGCTTATTAGATTATGTTGCTGTGTCTCCAATTATATCTTTAAAGTTTCTCCCTCTCACATACTCCTCCACATGTCCCCTTTCTCTGCTTTCTTACTGGCCACTTCTCAAACACATGGCTGATCTATTCCGGA-GCATTCAACTCCCACCTGTAAAGGCAGCCAGTGGCCTTGGGAGGAGGGCTGCCCGAGACCATGGGaaccatgttttggtcaccaacgagc i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414747 2 + 80974532 I a score=5428.000000 s hg38.chr1_KI270759v1_alt 257975 3 + 425601 tgc s panTro4.chr1 225014076 3 + 228333871 tgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226380435 3 - 229942017 tgc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140266975 3 - 143122389 tgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16975899 3 - 229590362 TGC i rheMac3.chr1 C 0 I 395 s macFas5.chr1 223739553 3 - 227556264 cgc i macFas5.chr1 I 291 C 0 s papAnu2.chr1 16790141 3 - 220367699 cgc i papAnu2.chr1 I 293 C 0 s calJac3.chr19 14268264 3 - 49578535 cac i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414747 2 + 80974532 I e chlSab2.chr25 82587897 399 + 85787240 I a score=74059.000000 s hg38.chr1_KI270759v1_alt 257978 55 + 425601 ctgtataatggtggtcccataa--------gattataatactgt-------gtttttactacaccttttc s panTro4.chr1 225014079 55 + 228333871 ctgtataatggtggtcccataa--------gattataatactat-------gtttttactacaccttttc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226380438 55 - 229942017 atgtataatggtggtcccataa--------gattataatactat-------gtttttactataccttttc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140266978 55 - 143122389 atgtataatggtggtcccataa--------gattataatactat-------gttttcactataccctttc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223739556 70 - 227556264 aggtataatggtggtcccataacactatgggattataataagattataatagtttttactataccttttc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16790144 67 - 220367699 AGGTATAATGGTGGTCCCATAACACTATGGGATTATAATAAGATT---ATagtttttactataccttttc i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14268267 52 - 49578535 atgtgtaatggtggtcccataa--------gagt---atactat-------acttttgctataccttttc i calJac3.chr19 C 0 I 485 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414747 2 + 80974532 I e rheMac3.chr1 16975902 395 - 229590362 I e chlSab2.chr25 82587897 399 + 85787240 I a score=17580.000000 s hg38.chr1_KI270759v1_alt 258033 17 + 425601 tatgtttaggtatgtt------------------g s panTro4.chr1 225014134 35 + 228333871 tatgtttaggtatgtttagatTTAGATTAGATATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226380493 35 - 229942017 tatgtttaggtatgtttagatTTAGATTAGATATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140267033 30 - 143122389 taagtttaggtatgtttagat-----ttagatatg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223739626 17 - 227556264 tatgtttaggtatgttt------------------ i macFas5.chr1 C 0 I 18 s papAnu2.chr1 16790211 17 - 220367699 tatgtttagatatgttt------------------ i papAnu2.chr1 C 0 I 18 s calJac3.chr19 14268804 30 - 49578535 tatgtttagg-----ttagatttagagtagatATG i calJac3.chr19 I 485 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414747 2 + 80974532 I e rheMac3.chr1 16975902 395 - 229590362 I e chlSab2.chr25 82587897 399 + 85787240 I a score=313243.000000 s hg38.chr1_KI270759v1_alt 258050 102 + 425601 tttagatTTAGAATATGTAACGCAATTACCGCTGCGTTaccagcaatcccaagaggaccc-cagaccctctgaaggaagcgggctcctgcaggacccgggaga s panTro4.chr1 225014169 102 + 228333871 TTTAGATTTAGAATATGTAACGCAATTACCACTGTGTTaccagcaatcccgagaggaccc-cagaccctctgaaggaagcgggctcctgcaggacccgggaga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226380528 102 - 229942017 TTTAGATTTAGAATGTGTAACACAATTACCACTGTGTTaccagcaatcctgagaggaccc-cagaccctctgaaggaagcgggctcctgcaggacccgggaga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140267063 102 - 143122389 tttaGATTTAGAATATGTAACACAATTGCCACTGTGTTaccagcaatcccgagaggaccc-cagaccctctgaaggaagcgggctcctgcaggacccgggaga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16976297 102 - 229590362 TTTGGATTTAGAATATGTAACACAGTTACCACTGTGTTaccagcaatcccgagaggaccc-cagaccctctgaaggaagcgggctcctgcaggacccgggaga i rheMac3.chr1 I 395 C 0 s macFas5.chr1 223739661 102 - 227556264 TTTGGATTTAGAATATGTAACACAGTTACCACTGTGTTaccagcaatcccgagaggaccc-cagaccctctgaaggaagcgggctcctgcaggacccgggaga i macFas5.chr1 I 18 C 0 s papAnu2.chr1 16790246 102 - 220367699 TTTGGATTTAGAATATGTAACACAGTTACCACTGTGTTACCAGCAATCCCGAGAGGACcc-cagaccctctgaaggaagcggGCTCCTGCAGGACCCGGGAGA i papAnu2.chr1 I 18 C 0 s chlSab2.chr25 82588296 102 + 85787240 TTTGGATTTAGAATATGTAACACAATTACCACTGTGTTaccagcaatcccgagaggaccc-cagaccctctgaaggaagtgggctcctgcaggacctgggaga i chlSab2.chr25 I 399 C 0 s calJac3.chr19 14268834 99 - 49578535 TTTAGGGTTAGAGTAGGTAACACATTTACCACTGTGTTCccagcgatcctgagaggacccacagaccctctgaagga----ggctcctgcaggagccaggaga i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36414747 2 + 80974532 I a score=2507549.000000 s hg38.chr1_KI270759v1_alt 258152 842 + 425601 caGTGTTGAACTTGACCTTGCTCT------CCTCCTCGGGTCAGGCCTGCCG-ACC-----------CTGCACTACAGGTT-CCTTTTTCTCTCCCTGTCCGTGCATC--CATCTGTTTCTGCACTCTCTTCGGTGCATCCTCTG---AACCACCAGAATTAGGTTCCTCCACACCAAATGTGATCATTTCATTTCGCAGCTAGATTGCTCGTGAACAGCTAAGCAGGTCACGCTGAGCTCGACACAGTCCAATCCCAAGTACCAG---TCAGGCTCCCACCGTCCCTTCCTATCCCAAAATGTCACCTCCCc-----tgtgttgcagccacactgaagcctcaatgtcccctaaacattccagaccctcttgtgactctgagtctctgcccctgggttcacgccacttagaatgagcttccccccattttctgcgatacaca--------ctgtcacttt-cCCTGGGAACAGATTCGACCTGGGCAGAATGCTCTTCAGTTTGTTCCTATCTCTGCCGGGAT------CTATATGTTCTGGACTCTCTTCTACGACACGGAGACCTTTCCCGGAGCAGGAACGGGGCCACGGCCGTGTTTGCATTTTCTGAACCCAGGATGGTGCCACTGTGGTTTGTTCTCCCCGTTCAAGTGTTGCTGACTGGTGGGGA-GGGACAGCATCGCCTCAGTGAAAGTTTTGGGTTAAACACT---------GTCTGCAGTAATTCAAAAGGATAAGAAGGACTCCTTTCACTGTGCATCTTTAGACGAAGCATCAACAAAGGCTTTTTCACTGAAATCCAAA-CTCAAGGTG--TATACATGTCACCTCCCAGCACA-GCAAATGGCACAGACTCGAGGGAAT-GTTTTCCTTCCGGAACAACATTATAAAG s panTro4.chr1 225014271 854 + 228333871 caGTGTTAAACTTGACCTTGCTCT------CCTCCTTGGGTCAGGCCCACAGCATCTTTCATGGGGACTGCACTACAGGTT-CCTTTTTCTCTCCCTGTCCGTGCATC--CATCTGTTTCTGCACTCTCTTCGGTGTGTCCTCTG---AACCACCAGAATTAGGTTCCTCCACACCAAATGTGATCATTTCATTTCACAGCTAGATTGCTCATAAACAGCTAAGCAGGTCACGCTAAGCTCGACACAGTCCAATCCCAAATACCAG---TCAGGCTCCCACCGTCCCTTCCTATCCCAAAATGTCACCTcccc-----tgtgttgcagccacactgaagcctcagtgtcccctaaacattccagaccctcttgtgactctgagtctctgcccctgggttcactccacttagaatgagcttccccccattttctgcgatacaca--------ctgtcacttt-cCCTGTGAACAGATTCGACCTGGTCAGAATGCTCTTCAGTTTGTTCCTATCTCTGCCGGGAT------CTATATGTTCTGGACTCTCTTCTACGACACGGAGACCTTTCCCGGAGCAGGAACAGGGCCACGGCCATGTTTGCATTTTCTGAACCCAGGATGATGCCACTGTGGTTTGTTCTCCCCGTTCAAGTGTTGCTGACTGGTGGGGA-GGGACAGCATCGCCTCATTGAAAGTTTTGGGTTAAACACT---------GTCTGCAGTAATTCAAAGGGATAAGAAGGACTCCTTTCACTGTGCATCTTTAGACGAAGCATCAACAAAGGCTTTTTCACTGAAATCCAAA-CTCAAGGTG--TATACGTGTCACCTCCCAGCACA-GCAAACGGCACCGACTCGAGGGAAT-GTTTTCCTTCCGGAACAACATTATAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226380630 851 - 229942017 caGTGTGGAACTTGACCTTGCTCT------CCTCCTCAGGTCAGGCCCACAGCATCTTTCATGGGGACTGCACTACAGGTTCCCTTTTTCTCTCCCTGTCAGTGCATC--CATCTGTTTCTGCGCTCTCTTCGGTGTGTCCTCTG---AACCACCAGAATTAGGTTCCTGCACACCAAATGTGATCATTTCGTTTCACAGCTAGATTGCTTTTAAACAGCTAAGCAGGTCACGCTAAGCTCAACACAGTCCAATCCCAAATACCAG---TCAGGCTCCCACTGTCCCTTCCTATCCCAAAATGTCACCTcccc-----tgtgttgcagccacattgaagcctcagtggcccctaaacgttccagaccctcttgtgactctgagtctttgctcctgggttcactccacttagaatgagcttccccccATGTTCTGCGATACACA----------GTCACTTC-CCCTGTGAACAGATCCGACCTGGGCAGAATGCTCTTCAGTTTGTTCCTGTCGCTGCCGGGAT------CTATATGCTCT-GACTCTCTTCTACGACACGGAGACCTTTCCCGGAGCAGGAACGGGGCCACAGCCATGTTTGCATTTTCCGAACCCAGGATGGTGCCCCTGTTGTTTGTTCTCCCCGTTCAAGTGTTGCTGACTGGTGGGGA-GGGACAGCATCGCCTCATTGAAAGTTTTGGGTTAAACACT---------GTCTGCAGTAATTCAAAGGGATAAGAAAG-CTCCTTTCGCTGTACATCTTTGGACGAAGCATCAACAAAGGATTTTTCATTGAAATCCAAA-CTCAAGGTG--TATACATGTCACCTCCCAGCACA-GCAAACGGCACAGACTCCAGGGAAT-GTTTTCCTTCCAGAACAACATTATAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140267165 853 - 143122389 caGTGTTGAACTTGACCTTGCTCT------CCTC---GGGTCAGGCCCACAGCATCTTTCATGGGGACCCCACTACAGGT--CCTTTTTCTCTCCCTGTGAGTGCATC--CATCTGTTTCTGCGCTCTCTTCGGCGTGTCCTCGG---AACCACCAGAATTAGGTTCCTCCATACCAAATGTGATCATTTCGTTTCACAGCTAGATTGCTTTTAAACAGCTAAGCAGGTCACGCTAAGCTCGACACAGTCCAATCCCAGTCCCAAGGGATAAGGCTCCCAGCGTCCCTTCCTATCCCTAAATGTCACCTcccc-----tgtgttgcagccacacggaagcctcagtgtcccctaaacattccagaccctcttgtgactctgactctttgcccctgggtttcctccacttagaatgagcttcctcccattttcTGTGTTACGGA--------CGGTCACTTC-CCCTGTGAACAGATTCGACCTGGGCAGAATGCTCTTCAGTTTGTTCCTGTCTCTGCCGGGAT------CTATATGTTCTGGACTCTCTTCTACGACATGGAGACCTTTCCCAGAGCAGGAACGGGGCCATGGCCATGTTTGCATGTTCCGAACCCAGGATGGTGCCACCGTTGTTTGTTCTCCCCGTTCAAGTGTTGCTGACTGGTGGGGA-GGGTCAGCATCGCCTCATTGAAAGTTTTGGGTTAAACACT---------GTCTGCAGTAATTCAAAGGGATAAGAAGGGCTCCTTTCACCGCGCATCTTTAGACGAAGCATCAACAAAGGCTTTTTCACTGAAATCCAGA-CTCAAGGTG--TATACGTGTCACCTCCCAGCACA-GCAAACGGCACAGACTCCAGGGAAC-GTTTTCCTTCCGGAACAACATTATAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16976399 852 - 229590362 caGTGTTGAACTTGACCTCGCTCT------CCTCCTCGGGTCAGGCCCACAGCATCTTTCATGGGGACTCCACTACAGGTTCCTTTTTTCTCTCCCTGGCAGTGCATG--CTTCTGTTTCTGCACTCTCTTCGGTGTGTCCTCTG---AACCACCAGAATTAGGTTCCGCCAAACCAAATGCGATCATTTCCTTTCACAACTAGATTGCTTTTAAACAGCTAAGCAGGTCATGCTGAGCT---CATAGTCCAATCCCAAATACCAG---TCAGGGTCCCAACGTCCCTTCCTATCCTAAAATGTCACCTcccc-----tgtgttgcagccacactgaagcctcagtgtcccctaaacattccagaccctcttgtgactctgagtctttgcccctgagttccctccacttagaatgagcttgcccccgttttctgcGATACAGA--------CTGTCACGTC-CCCTGTGAACAGATTCGACCTGGGCAGAATGCTCTTCAGTTTGTTCCTGTCTCTGCCGGGAT------CTGTATGTTCTGGACTCTCTTCTACCACATGGAGACCTTCCCCAGAGCAGGAACGGGGCCGCGGCCATGTTTGCATTCTCTGAAGCCAGCGTGGTGCCATAGTTGTCTCTTCTCCCTGTTCAAATGTTGCTGACTGGTAGGGAGGGGACGGCATCACCTCACTGAAAGTTTTGGGTTAAACACC---------GTCTGCAGTAATCCAAAAGGATGAGAAGGGCTCCTTTCACTGTGCATCTTTAGACGAAGCATCAACAAAGGCTTTTTCATTGAAATCCAGA-CTCAAGGTG--TATCCATGTCACCTCCCATCACA-GCTAACGTCAAAGACTCCAGGGAAT-GTTTCCTTTCCGG-ACCACATTAGAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223739763 852 - 227556264 caGTGTTGAACTTGACCTCGCTCT------CCTCCTCGGGTCAGGCCCACAGCATCTTTCATGGGGACTCCACTACAGGTTCCTTTTTTCTCTCCCTGTCAGTGCATG--CTTCTGTTTCTGCACTCTCTTCGGTGTGTCCTCTG---AACCACCAGAATTAGGTTCCGCCAAACCAAATGTGATCATTTCCTTTCACAACTAGATTGCTTTTAAACAGCTAAGCAGGTCATGCTGAGCT---CATAGTCCAATCCCAAATACCAG---TCAGGGTCCCAACGTCCCTTCCTATCCTAAAATGTCACCTcccc-----tgtgttgcagccacactgaagcctcagtgtcccctaaacattccagaccctcttgtgactctgagtctttgcccctgagttccctccacttagaatgagcttgcccccgttttctgcGATACAGA--------CTGTCACGTC-CCCTGTGAACAGATTCGACCTGGGCAGAATGCTCTTCAGTTTGTTCCTGTCTCTGCCGGGAT------CTGTATGTTCTGGACTCTCTTCTACCACATGGAGACCTTCCCCAGAGCAGGAACGGGGCCGCGGCCATGTTTGCATTCTCTGAAGCCAGCGTGGTGCCATAGTTGTCTCTTCTCCCTGTTCAAATGTTGCTGACTGGTGGGGAGGGGACGGCATCACCTCACTGAAAGTTTTGGGTTAAACACC---------GTCTGCAGTAATCCAAAAGGATGAGAAGGGCTCCTTTCACTGTGCATCGTTAGACGAAGCATCAACAAAGGCTTTTTCATTGAAATCCAGA-CTCAAGGTG--TATCCATGTCACCTCCCATCACA-GCTAACGTCAAAGACTCCAGGGAAT-GTTTCCTTTCCGG-ACCACATTAGAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16790348 855 - 220367699 CAGTGTTGAACTTGACCTCGCTCT------CCTCCTCGGGTCAGGCCCACAGCATCTTTCATGGGGACTCCACTACAggttccttttttctctccctgtcAGTGCATG--CTTCTATTTCTGCACTCTCTTCGGTGTGTCCTCTG---AACCACCAGAATTAGGTTCCATCAAACCAAATGTGATCATTTCCTTTCACAACTGGATTGCTTTTAAACAGCTAAGCAGGTCATGCTGAGCTCGACATAGTCCAATCCCAAATACCAG---TCAGGGTCCCAACGTCCCTTCCTATCCTAAAATGTCACCTCCCT-----TGTGTTGTAGCCACACTGAAGCCTCAGTGTCCCCTAAACATTCCAGACCCTCTTGTGACTCTGAGTCTTTGCCCCTGAGTTCCCTCCACTTAGAATGAGCTTCCCCCCGTTTTCTGCGATACAGA--------CTGTCACTTC-CCCTGTGAACAGATTCGACCTGGGCAGAATGCTCTTCAGTTTGTTCCTGTCTCTGCCGGGAT------CTGTATGTTCTGGACTCTCTTCTACCACATGGAGACCTTCCCCAGAGCAGGAATGGAGCCACGGCCATGTTTGCATTTTCTGAAGCCAGCGTGGTGCCATAGTTGTCTCTTCTCCCTGTTCAAATGTTGCTGACTGGTGGGGAGGGGACGGCATCACCTCACTGAAAGTTTTGGGTTAAACACC---------GTCTGCAGTAATTCAAAAGGATAAGAAGGGCTCCTTTCACTGTGCATCTTTAGACGAAGCATCAACAAAGGCTTTTTCATTGAAATCCAGA-CTCAAGGTG--TATCCATGTCACCTCCCATCACA-GCTAACGTCAAAGACTCCAGGCAAT-GTTTCCTTTCCGG-ACCACATTAGAAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82588398 855 + 85787240 caGTGTTGAACTTGACCTCGCTCT------CCTCCTCGGGTCAGGCCCACAGCATCTTTCATGGGGACTCCACTACAGGTTCCTTTTTTCTCTCCCTGTCAGTGCATG--CTTCTGTTTCTGCACTCTCTTCGGTGTGTCCTCTG---AACCACCAGAATTAGGCTCCGCCAAACCAAATGTGATCATTTCCTTTCACAACTAGATTGCTTTTAAACAGCTAAGCAGGTCATGCTGAGCTCGACATAGTCCAATCCCAAATACCAG---TCAGGGTCCCAACGTCCCTTCCTATCCTAAAATGTCACCTcccc-----tgtgttgcagccacactgaagcctcagtgtcccctaaacattccagaccctcttgtgactctgagtctttgcccctgagttccctccacttagaatgagcttccccccattttctgcGATACAGA--------CTGTCACTTC-CCCTGTGAACAGATTCGACCTGGGCAGAATGCTCTTCAGTTTGTTCCTGTCTCTGCCGGGAT------CTGTATGTTCTGGACTCTCTTCTACCACATGGAGACCTTCCCCAGAGCAGGAATGGGGCCACGGCCATGTTTGCATTTTCTGAAGCCAGCGTGGTGCCATAGTTGTCTCTTCTCCCTGTTCAAATGTTGCTGACTGGTGGGGAGGGGACGGCATCACCTCACTGAAAGTTTTGGGTTAAACACT---------GTCTGCAGTAATTCAAAAGGATAAGAAGGGCTCCTTTCACGGTGCATCTTTAGAGGAAGTATCAACAAAGGCTTTTTCATTGAAATCCAGA-CTCAAGGTG--TATACATATCACTTCCCATCACA-GCTAACGTCAAAGATTCCAGGGAAC-GTTTCCTTTCCGG-ACTACTTTAGAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14268933 851 - 49578535 caGTGTTGAACTTGAACTTGACCTTGCCGGCCTCCTCTGGCCGGGCCCACAGCATCTGTCACGGGGACATCACTTCTGGTCCCTGTTTTCTCTTGCTGTCAGCGCACC--CTTCTGTTTCTGCTGTCTCTTCGCTGTGCCCTCTG---AACCGCCAGAATTACATTCCTCCAAACCAAATGTCATTATTCCCGTTAACAGCCAGGTGACTTTTCAACAGTTAAGCGGGTCACGCTAAGCTCGGCACAGTCCAGT-CCAAATACCAG---TCAGGCTCCCCACGTCCCTCCCTGTCCCAAAATGTCACCTCCCc-----tgtgttgcagccacactgaagcctccgtgtcccctaaatatcccagaccctcttgtgactctgagtcttggcccc-gggctccctcctctgagaatgagcttcccccaatattctcccgcacaga--------ctgtccctcaGCCTTGTGGACAGATCGGACCTGGGCAGAATGCTCTGCAGTCTGCTCCTGTCTTTGCCGGGAT------CTGAATGTTCCGGACTCTCTTCCACTGCA-GGGGGCCTTCCCCAGAGCAGGAACGGGG-CGCGGCAGTGTTTGCATTTTCCAAACCCAGCGTGGTGCCACCGTCGCCTCTCCTCC---TTCAGATGTTACTAACTGGGTGGGGGGAGACAGTATCACCTAACTGAAAGTTTTCTGTTAAACACT---------GTCTGC-GTAATTCAAAAAGATAAGAA-----TCTTTAACTGTGCGTCTTCAGATGAAGTGTCAATAAATGATTTTTTATTGAAATCCAAA-CTCAAGGGG--TAGACATGTCACCTCCCACCACA-GCAAACGTCACAGGCTCCAGGGAATGGTTTCCCTTCCAGAACAACATTATAACG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36414749 802 + 80974532 CAGAGTTGAACCGGTCCAGACTCT------CGTGCTCCTGACA-TCCCACAGTGTCCTTCCCGGGGACTTCACCCCCCACTCCCATGTTCTCTCCCTGCCACTGCGTCATCCTCTGTT-----GGTCTCTTCTGGGTGTCCTCCTCCCAACAGCCCGAAGCATATTACTAAAGTCCAAATGTGCTCATGACATGTAACAGCTGGATT-CCGTTGAACAGCTAAGCAGGTCACACCAGGCTCTGCACAGTCCAGTCCTGGATTTCCA---CATGCCTCCCAACATGCCT-CCTACCCCGAAATGCCGCTCCCCCACCCTTGCACTGCAGCCACGGGGAAGCTTCAGT------------------------------------CCCTTTGTTCCTGG--TCCCTCTGCT-AGAATGAGCTTCCCCCCATTCTC-ATGGGCCAAACCACACCCCTATCTCCTG-CCCCGGAGGCAGAGCTTGCTTG--------------CACTGTCTTCCTGCCTCTGCCAGGACTGTCTGCTTTCTGGCCTGGGTTTCTCTTCACTGCACTGAGCCCCCCTGCAGGGGAGGAGCTG-GCTAGGTCGGTGCTTGCATTTCCTGCTCCCAGCATGATGCCAGGGGAGCTTCCCCTCCCCCATC------------CACGTTAGGA-GGGTC---ATCAGCTT-TTGAAAGCTTTGAGTTCCTTACCAGAGGCTGAGGCTGCAACAACTCAGAAATATGGGGAAAGAG-----AGCTGTGCTTCTTTAGGTGAGGCAGCAGA-------CTTTTGTGGAAACCCAGACCTCAGGGTACTCACACACATCCCCTTCCAATCCAGGTAAATGTCATAGGCTCTGGGGAGTGGTCTCCTTTCCAGAATAACATTAGAAAG i canFam3.chr7 I 2 I 102 e mm10.chr1 178838108 435 + 195471971 I a score=751538.000000 s hg38.chr1_KI270759v1_alt 258994 279 + 425601 cagcag-cccccagcctgtaggcaccagggactggtttcacggaagacagttttcccacggaccaagggtggt-----ggtgggggatgatgatttcaggaagattccagtgcattccatttatcattagattctctcaaggagcgtgcaacctaga-cccccacatgcacagctcacaatagggtttgtgcttccatgagaatctaatgctgctgctgatctgacgggaggcagagttcaagtggtaacgcttaccttctgctgtgtggcctgcttcttaacagg s panTro4.chr1 225015125 279 + 228333871 cagcag-cccccagcctgtaggcaccagggactgatttcacggaagacagttttcccacggaccaagggtggt-----ggtgggggatgatgatttcaggaagattccagtgcattccatttatcattagattctctcaaggagcgtgcaacctaga-cccccacatgcacagctcacaatagggtttgtgcttccatgagaatctaatgctgctgctgatctgacgggaggcagagttcaagtggtaacgcttaccttctgctgtgtggcctgcttcttaacagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226381481 280 - 229942017 Tagcag-cccccagcctgtaggtaccagggactggtttcatggaagacagttttcccacggaccaagggtggt-----ggtgggggacaatgatttcaggaagattccagtgcattccatttatcattagattctctcaaggagcgtgcaacctagatccctcacatgcgcagctcacagtaggatttgtgcttccatgagaatctaatgctgctgctgatctgacgggaggcagagtgcaagtggtaacgcttaccttctgctatgtggcctgcttcttaacagg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140268018 281 - 143122389 cagcagccccccagcctgcaggtaccagggactggtttcacggaagacagttttcccacggaccaagggtggt-----ggtgggggatgatgatttctggaagattccagtgcattccatttatcgtcagattctctcaaggagcgtgcagctgagatccctcacatgcgcagctcacgatagggtttatgcttccgtgagaatctaatgctgctgctgatctgacgggaggcagagttcaagtggtaatgcttaccttctgctatgtggcctgcttcttaacagg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16977251 282 - 229590362 cagcag-tccccagcctgtagacaccaggggctggtttcagggaagacagttttcccacagactgagggtggtggtggggtgggggacagtgatttcaggaagattccagtgccttccatttatcattagattctctc---gagcgtgcaacctagatccctcatgtgcgcagctcacgatagactttgtgcttctatgagaaactaatgctggtgctgatctgactggaggcagggttcaggtggtaaccctcaccttctgctatgtggcctgctttttaacagg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223740615 277 - 227556264 cagcag-tccccagcctgtagacaccaggggctggtttcagggaagacagttttcccacggactgagggtggt-----ggtgggggacagtgatttcaggaagattccagtgccttccatttatcattagattctctc---gagcgtgcaacctagatccctcatgtgcgcagctcacgatagactttgtgcttctatgagaatctaatgctggtgctgatctgactggaggcagggttcaggtggtaaccctcaccttctgctatgtggcctgctttttaacagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16791203 277 - 220367699 CAGCAG-TCCCCAGCCTGTAGGCACCAGGggctggtttcatggaagacagttttcccACGGACcgagggtggt-----ggtgggggatgATGATTTCAGGAAGATTCCAGTGCGTTCCATTTATCATTAGATTCTCtc---gagcgtgcaacctagatccctcacgtgCGCAGCTCACGATAGACTttgtgcttctatgagaatctaatgctggtGCTGATCTGACTGGAGGCAGAGTTCAAGTGGTAACCCTCACCTTCTGCTATGTGGCCTGCTTTTTAACAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82589253 277 + 85787240 cagcag-tccccagcctgtaggcaccaggggctggtttcgtggaagacagttttcccacggactgagggtggt-----ggtgggggacaatgatttcaggaagattccagtgcgttccatttatcattagattctctc---gagcgtgcaacctagatccctcatgtgcgcagctcacgatagactttgtgcttctatgagaatctaatgctggtgctgatctgactggaggcagagttcaggtggtaaccctcaccttctgctatgtggcctgctttttaacagg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14269784 256 - 49578535 cagtgg--ccctagcctgtagggaccagggaccggttccatggaagacagtttttccacggaccaagggtggt-----ggt--gggacgatgatttcaggatgcttcgagggcattacatcgatcattagatcctcccaaggcacacgcaacccggagccctcacctgcgcggtccacaacagggtctgcgctcttgtgagaatccg----tgctgc-----------------aagttccagtggtgatgctctccgtctgctatgtggcccggtttttaacagg i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36415551 102 + 80974532 I a score=637978.000000 s hg38.chr1_KI270759v1_alt 259273 313 + 425601 acaccgactagcactggtccgtggcctgggggttaggga-gccctgCTCTGTTACAGAGAACAAAATTTGTTACGTAGggatcacttgagcccaggagttcaaggctgcaatgagctatgattgtgccactgcttttcagcctggctga----gcgagaccctctctataa-aaaaTTTTTTT-AAAGAGTAAAATTTG------TATAGTTTTTGGGAATTTACTATGGTGATATTTTATAGCGCTGTCAGGAATGCTCTAGCTATTGGTGGGCCCTCAGAGCACAGTGAATTCGAGGGCTCTGATGTATTCTGTTGttttt--ttt s panTro4.chr1 225015404 313 + 228333871 acaccgactagcactggtccgtggcctgggggttaggga-gccctgCTCTGTTACAGAGAACAAAATTTGTTACGTAGggatcacttgagcccaggagttcaaggctgcaatgagctatgattgtgccactgcttttcagcctggctga----gcgagaccctctctataa-aaaTTTTTTTT-AAAGAGTAAAATTTG------TATCGTTTTTGGGAATTTACTATGGTGATATTTTATAGCGCTGTCAGGAATGCTCTAGCTATTGGTGGGCCCTCAGAGCACAGTGAATTCGAGGGCTCTGATGTATTCTGTTGttttt--ttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226381761 321 - 229942017 ccaccgactagcaccggtccatgtcctgggggttaggga-gccccgCTCTGTTACAGAGAACAAAATTTGTTACGTAGggatcacttgagcccaggagttcaagcctgcaatgagctatgattgtgccactgcttttcagcctgggtga----gcaagaccctctctataa-aaaTTTTTTTT-AAAGAGTAAAATTTGTATTCTTATAGTTTTTTGGAGTTTACTATGGTGAAATTTTATAGCGCTGTCAGGGATGCTCTAGCTATTGGTGGGCCCTCAGAGCACATTGAATTCGAGGGCTCTGATGTATTCtgtttttttttgttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140268299 317 - 143122389 ccaccaactagcactggtcggtggcctgggggttgggga-gccccgCTCTGTTACAGAGAACAAAATGTGTTACGTAGggatcacttgagcccaggagtccaaggctgcaatgagctatgattgtgccactgcttttcagcctgggtga----gcaagaccctctctataa-aaaTTTTTTTTAAAAGAGTAAAATTTGTATTCTTTCAGTTTTCCGGAGTTTACTATGGTGAAATTTTACAGCGCTGTCAGGAATGCTCTAGCTATTGGTGGGCCCTCAGAGCACATTGAATTCGAGGGCTCTGATGTAttctgtttttttt----- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16977533 318 - 229590362 ccaccgactagcaccagtccatggcctgggggttgggga--ccccCCTCCATTAGAAAGAACAAAATTTGTTATGTAGggatcacgtgagcccaggagttcaaggctgcaatgagctgtaattgtgccactgctttccagcctgggtga----gcaagaccctctctgtaa-agaatttttaa-aaagagtaaaaTTTGTGTTCTTATAGTTTTTTGGAGTTTACTGTGGTGAAATTTGATAGCACTGTCAGGAATGCTGTAGCTATTGGTGGGACCTCAGAGCACACTGAATTGGAGGGCTCTGATGTATTCTTTTTTTTTT--TTT i rheMac3.chr1 C 0 M 236 s macFas5.chr1 223740892 308 - 227556264 ccaccgactagcaccagtccatggcctgggggttggggaccccCCCCTCCATTAGAAAGAACAAAATTTGTTATGTAGggatcatgtgagcccaggagttcaaggctgcaatgagctgtaattgtgccactgctttccagcctgggtga----gcaagaccctctctgtaa-agaatttttaa-aaagagtaaaaTTTGTGTTCTTATAGTTTTTTGGAGTTTACTGTGGTGAAATTTGATAGCACTGTCAGGAATGCTGTAGCTATTGGTGGGACCTCAGAGCACACTGAATTGGAGGGCTCTGATGTAttct-------------- i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82589530 319 + 85787240 ccaccgactagcaccagtccatggcctgggggttgggga-ccccCTCTCCATTAGAAAGAATAAAATTTGTTATGTAGggatcacttgagcccaggagttcaaggctgcaatgagctgtaattgtgccactgctttccagcctgggtga----gcaagaccctctctGTAA-AGACTTTTTAA-AAAGAGTAAAATTTGTGTTCTTATAGTTTTTTGGAGTTTACTATGGTGAAATTTTATAGCACTGTCAGGAATGCTGTAGCTATTGGTGGGACCTCAGAGCACACTGAATTCGAGGGCTCCGATGTAttctttttttttt--ttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14270040 302 - 49578535 ccactgagtagcaccagtctgtggcctgggggttgcgga--cctcCCTCCATTATAAAGAACAAAATTTGTTACATAGAgatcacttgagcccaggagttcgaggctgcagtgagctatgattgtgccactgctctccagcctgggtgactgggcgagaccctctctATAAGAAGATGTTTAA-GAAGAGGGAAGTTTGTATTCTTACAGTTTTTCAGAGTTCACTATGGTGACCCTTTATCGCACTGTCAGGAATGCTGT------------------AGAGCACATTGAATTCTTGGGCTCTGATGTATCCttttatttct----- i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36415551 102 + 80974532 I e papAnu2.chr1 16791480 0 - 220367699 C a score=78869.000000 s hg38.chr1_KI270759v1_alt 259586 93 + 425601 gggtttttttgttttttttat---------tttgagacagagtctcactctgttgcccaggctggagtgcagtggcaccatctcagctcactgcaacctcca s panTro4.chr1 225015717 89 + 228333871 g----tttttgttttttgttt---------tttgagacagagtctcactctgttgcccaggctggagtgcagtggcaccatctcagctcactgcaacctcca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226382082 100 - 229942017 gttttgttttgttttttgtttgtttgtttgtttgagacagagtctaa--ctgttgcccaggctggagtgcagtggcaccatctctgctcactgcaacctgaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140268616 80 - 143122389 -------------tttttttt---------tttgagacagagtctcactctgttgctcaggctggggtgcagtggcaccatttctgctcactgcaacctcca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223741200 82 - 227556264 -----------tttttttttt---------ttgtagatggactctcgctctgttgcccaggctggagtgcagtggcactaactctgctcactgcagcctccg i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82589849 59 + 85787240 ------------------------------tggtaga-------------tgttgcccaggctggagtgcagtggcaccaactctgctcactgcagcctccg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14270342 60 - 49578535 ---------------------------------gagacagggtctcactctgtc-cccaggctggc--------gcagcatctctgctcagcacaacctcca i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36415551 102 + 80974532 I e rheMac3.chr1 16977851 236 - 229590362 M e papAnu2.chr1 16791480 0 - 220367699 C a score=382195.000000 s hg38.chr1_KI270759v1_alt 259679 170 + 425601 cctcccgg--gttcaagcaattctcctgcctcagcctcctgagtagctgggac--tacaggcgtgcaccaccacgcccagctaatttttcctatttttagtagagacggggtctcactacgttggccaggctgctctcaaacttctggcctcaagcaagttgccctcccgggcc s panTro4.chr1 225015806 170 + 228333871 cctcccgg--gttcaagcaattctcctgcctcagcctcctgagtagctgggac--tacaggcatgcaccaccacgcccagctaatttttcctatttttagtagagacggggtctcactacgttggccaggctgctctcaaacttctggcctcaagcaagttgccctcctgggcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226382182 170 - 229942017 cctcctgg--gttcaagcaattctcctgcctcagcctcctgagtagctgggac--tacaggcgtgcaccaccacgcccagctaatgttttgtatttttagtagagacggggtctcactacattggccaggccactctcaaacttctggcctcaagcaatctgcccgcctgggcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140268696 172 - 143122389 cctcccgg--gttcgagcaattctcctgcctcagcctcctgagtagctgggactatacaggcgtgcaccaccacgcccagctaattttttatatttttagtagagacggggtctcactacgttggccaggctgctctcaaacttctggcctcaagcaatctgcccgcctgggcc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223741282 172 - 227556264 cctcccagaggttcaagcaattctcctgcctcagcctcctgagtagctaggac--tacaggcatgcaccaccacgcccggctaattttttgtattttcagtagagacggggtctcactgtgttggccaggctgctttcaaacttctggtctcaagcagtctgcctgcctgggcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16791480 172 - 220367699 CCTCCcagaggttcaagcaattctcctgcctcagcctcctgagtagctaggac--tacaggcgtgcaccaccacgcccggctaattttttgtattttcagtagagatggggtctcactgtgttggccaggctgctttcaaacttctggtctcaagcagtctgcctgcctgggcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82589908 172 + 85787240 cctcccagaagttcaagcaattctcctgcctcagcctcttgagtagctaggac--tacaggcgtgcaccaccacgcccggctaattttttgtattttcagtagagacggggtctcactgtgttggctaggctgctttcaaacttctggtctcaagcagtctgcctgcctgggcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14270402 169 - 49578535 cctcccaa--gttcaaatgattctcctgcctcagcctcctgagta-ctaggac--tataggtgtgtaccaccacgcctggctaagtttttgtatctttagtagagacagggtttcaccatattggccaggctggtctcaaacgtctggcttgaagcagtctgcccgcttgggcc i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36415551 102 + 80974532 I e rheMac3.chr1 16977851 236 - 229590362 M a score=64272.000000 s hg38.chr1_KI270759v1_alt 259849 20 + 425601 tcccaaagtgctgggattac s panTro4.chr1 225015976 20 + 228333871 tcccaaagtgctgggattac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226382352 20 - 229942017 tcccaaagtgctgggattac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140268868 20 - 143122389 tcccaaagtgctgggattac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16978089 20 - 229590362 tcccaaagtgctgggattac i rheMac3.chr1 M 236 C 0 s macFas5.chr1 223741454 20 - 227556264 tcccaaagtgctgggattac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16791652 20 - 220367699 tcccaaagtgctgggattac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82590080 20 + 85787240 tcccaaagtgctgggattac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14270571 20 - 49578535 tcccaaagtgcagcggttac i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36415551 102 + 80974532 I a score=609298.000000 s hg38.chr1_KI270759v1_alt 259869 199 + 425601 aggcatgagccactgcgccgagccTCTGATGCGTTCTTGCCGGTCATTTGTACAGTGTTGCTTGCATGTGAGTTCT-TCTTCAGGTC-GAGATTAAGGGTATGACATTAGTACTAACCATTATTCAACCTCTGAAATATACGCACATGGGACAAAGGAGATAATTTCATTTACTTATGTGGCCTTACTTTGAAGATATTCA s panTro4.chr1 225015996 197 + 228333871 aggcatgagccactgcgccgagccTCTGATGCATTCTTGCCGGTCATTTGTACAGTGTTGCTTGCATGTGAGTTCT-TC---AGGTCAGGGATTAAGGGTGTGACATTAGTACTAACCATTATTCAACCTCTGAAATATATGCACATGGGACAAAGGAGATAATTTCATTTACTTATGTGGCCTTACTTTGAAGATATTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226382372 200 - 229942017 aggcatgagcgaccgcgccgagccTCTGATGCATTCTTGCCAGTCATTTGTACAGTGTTGCTTGTATGTGAGTTCT-TCTTCAGGTCAGAGATTAAGGGTATGACGTCAGTACTAACCATTATTCAACCTCTGAAATATATGCACATGGGACAAAGGAGATAATTTCATTTACTTATGTGGCCTTACTTTGAAGATATTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140268888 200 - 143122389 aggcatgagccaccgcgccgagccTCTGATGCATTCTTGCCAGTCATTTGTACAGTGTTGCTTCTATGTGAGTTCT-TCTTCAGGTCAGAGATTAAGGGTATGACGTCAGTACTAACCATTATTCAACCTCTGAAATATATGCACGTGGGGCAAAGGAGATAATTTCATTTATTTATGTGGCCTTACTTTGAAGATATTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16978109 200 - 229590362 aggcatgagccaccacgcccagccTCTGATGCATTCTTGCCAGTCATTTGTACAGTGTTGCTTGTATGTGAGTTCT-TCTTCAGGTCAGAGATTAAGGGTATGACGTCAGTACTAACCATTATTCAATCTCTGAAATATATGCACATGGGACAAAGGAGATAATTTCATTCACTTATGTGGCCTTACTTTGAAGATACTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223741474 200 - 227556264 aggcatgagccaccacgcccagccTCTGATGCATTCTTGCCAGTCATTTGTACAGTGTTGCTTGTATGTGAGTTCT-TCTTCAGGTCAGAGATTAAGGGTATGACGTCAGTACTAACCATTATTCAATCTCTGAAATATATGCACATGGGACAAAGGAGATAATTTCATTCACTTATGTGGCCTTACTTTGAAGATACTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16791672 200 - 220367699 aggcatgagccaccacgcccagcctctgatGCATTCTTGCCAGTCATTTGTACAGTGTTACTTGTATGTGAGTTCT-TCTTCAGGTCAGAGATTAAGGGTATGACGTCAGTACTAACCATTATTCAATCTCTGAAATATATGCACATGGGACAAAGGAGATAATTTCATTCACTTATGTGGCCTTACTTTGAAGATACTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82590100 200 + 85787240 aggcatgagccaccacgcccagccTCTGATGCATTCCTGCCAGTCATTTGTACAGTGTTGCTTGTATGTGAGTTCT-TCTTCAGGTCAGAGATTAAGGGTATGACGTCAGTACTAACCATTATTCAATCTCTGAAATATATGCACATGGGACAAAGAAGATAATTTCATTCACTTATGTGGCCTTACTTTGAAGATACTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14270591 176 - 49578535 aggagtgagccaccgtgcccagccTCTGATGTGTTCTTGCCCGTCATTTGTACAGTGTTGCTGGTATGTGAGCTCT-TCTTCA------------------------CGGTTCTAACCGGGATTCCACCTCTGAAATATATGCACATGGGACAAAGGGGATAGTTTCATTTACTTACTTAGCCTTCCTCTGAGGATATTCA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36415653 171 + 80974532 AAGCACATTTCACTGTG--GGGTCTGTGGTGC--TGTCACTGGTCATAGGCATGGCATCTCTTCCATGCATGTTCCGGCTCCAGG---GAGA----------------------AAGCGTTGTATCCCCTTTGAAATCTATCCACATGGAACAAAGGAGATCATTTGATT-GCCTGCATGACACTACTTTAAGGATGCTCA i canFam3.chr7 I 102 C 0 e mm10.chr1 178838108 435 + 195471971 I a score=1125431.000000 s hg38.chr1_KI270759v1_alt 260068 423 + 425601 tatgtt----------------------agtccattttgcattactat--aaaaaatacctaaggctgggtaatttat-----aaagaggtttaattggctcatggttctgca-gctgtacaggaagcatggtgctagcatctccttggcttctagtgaggcct---------------------------------------------------------------------------caggaagcttccgatcatggcagaaggtgcaaagggagcaggcatgtcacatggcaagagtgggagcaatagagagaagggggaggccccagactctttaaaacaaccatttctcacatgaactaactgag--------cgagagctcactgatcaccaaaggatggtgctaagccattcataagggatctgcggccatgatccagtcacctcccagcaggccccacctccagcactggggattacatttcaacatgagatttggaggggcaaacctctgagccatatcaCCATAGT s panTro4.chr1 225016193 423 + 228333871 tatgtt----------------------agtccattttgcattactat--aaaaaatacctaaggctgggtaatttat-----aaagaggtttaattggctcatggttctgca-gctgtacaggaagcatggtgctagcatctccctggcttctagtgaggcct---------------------------------------------------------------------------caggaagcttctgatcatggcagaaggtgcagagggagcaggcatgtcacatggcaagagtgggagcaagagagagaagggggaggccccagactctttaaaacaaccatttctcacatgaactaactgag--------cgagagctcactgatcaccaaaggatggtgctaagccattcataagggatctgcggccatgatccagtcacctcccagcaggccccacctccagcactggggattacatttcaacatgagctttggaggggcaaacccctgagccatatcaCCATAGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226382572 498 - 229942017 tatatt----------------------agtccattttgcattactat--aaaaaataccgaaggctgggtaatttat-----aaagaggttgaattggctcatggttctgca-gctgtacaggaagcagggtgctagcatctccttggcttctagtgaggcctcaggaagcttccgatcatggcagaagctgcagagggagcagggtgctagcatctccctggcttctagtgaggccacaggaagcttccgatcatggcagaagctgcagagggagcaggcatgtcacatggcaagagtgggagcaatagagagaacagggaggtcccagactctttaaaacaaccatttctcacatgaactaactgag--------tgagagctcactgatcaccaagggatggtgctaagccattcataagggatctgcagccatgatccagtcacctcccagcaggccccacctccagcactggggattacatttcaacatgagatttggaggggcaaacctctgagccgtatcaCCATAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140269088 419 - 143122389 tatgtt----------------------agtccattttgcattactat--aaaaaatacctaaggctgggtaatttat-----aaagaggtttagttggctcatggttctgca-gctgtacaggaagcatggtgctagcatctccttggcttctagcgaggcct---------------------------------------------------------------------------cgggaagcttccgatcatggcagaaggtgcagagggagcaggcatgtcacatggcaagagtgggagcaagagagagaagggggaggtcccag-ctctttaaaacaaccatttctcacgtgaactaactgag--------cgagagctcactgatcaccaaggggtggtgctaagccattcataagggatctgcggccatgatccagtcacctcccagcgggccctacctccagcactggggattacatttcagcatgagatttggaggggcaaacatccgagccatatcaCCAT--- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16978309 407 - 229590362 tatgtt----------------------agtacattttgcattactattaaaaaaatacctaaggctgggtaatttat-----aaagaggtttaattggctcatgtttctgca-gccatacaggaagcatgatgctagcatctccttggcttctagtgaggcct---------------------------------------------------------------------------caggaagcttccaatcatggcagaaggtgcagagggagcaggcatgtcacatggcaagagcgggaacaagagagagaagggggaggtcccagac------------------ctcacatgaactaactgag--------caagagctcactgatcaccaagggatgatgctaagccattcataagggatctacggccatgatccagtcacctcccagcaggccccacctgcagcactggggattacatgtcaacatgagatttggaggggcaaatatccgagccatatcaCCGTAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223741674 407 - 227556264 tatgtt----------------------agtacattttgcattactattaaaaaaatacctaaggctgggtaatttat-----aaagaggtttaattggctcatggttctgca-gccatacaggaagcatgatgctagcatctccttggcttctagtgaggcct---------------------------------------------------------------------------caggaagcttccaatcatggcagaaggtgcagagggagcaggcatgtcacatggcaagagcgggaacaagagagagaagggggaggtcccagac------------------ctcacatgaactaactgag--------caagagctcactgatcaccaagggatgatgctaagccattcataagggatctacggccatgatccagtcacctcccagcaggccccacctgcagcactggggattacatgtcaacatgagatttggaggggcaaatatccgagccatatcaCCGTAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16791872 407 - 220367699 TATGTT----------------------AGTACATTTTGcattactattaaaaaaatacctaaggctgggtaatttac-----aaagaggtttaattggctcatggttctgca-gccatacaggaagcatgatgctagcATCTCCTTGGCTtctagtgaggcct---------------------------------------------------------------------------caggaagcttccaatcatggcagaaggtgcagagggagcaggcatgtcacatggcaagagcgggaacaagagagagaagggggaggtcccAGAC------------------CTCACATGAACTAACTGAG--------CAAGAGCTCACTGATCACCAAGGGATGATGCtaagccattcataagggatctgcggccatgatccagtcacctcccagcaggccccacctgcagcactggggattacatgtcaacatgagatttggaggggcaaATATCCGAGCCATATCACCATGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82590300 407 + 85787240 tatgtt----------------------agtccattttgcattactataaaaaaaatacctaaggctgggtaatttat-----aaagaggtttaattggctcatggttctgca-gccgtacaggaagcatgatgctagcatctccttggcttctagtgaggcct---------------------------------------------------------------------------caggaagcttccaatcatggcagaaggtgcagagggagcaggcatgtcacatggcaagagcgggaacaagagagagaagggggaggtcccagac------------------ctcacatgaactaactgag--------caagaactcactgatcaccaagggatgatgctaagacattcataagggatctgcggccatgatccagtcacctcccagcaggccccacctccagcattggcgattacatgtcaacatgagatttggaggggcaaatatccgagccatatcaCCATAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14270767 431 - 49578535 TACGTTTTGCATGAATATTTGCAAAATGagtccattttgcatcaccat-aaaaaaatacccaaggctgggtgattgatggagaaaagaggtttaaccgacttacggttctgcaggctgtgcaggg-----------agcatcttcttggcttcttgtgaggcct---------------------------------------------------------------------------cgggaagctcccaatcatggcagcaggcgctgcgggagcaggcatgtcgcctggcaagagtgggagc--gagagagaagggggaggtcccagac--tctgaaacaactgtgtctcacgtgaactaacagagcgagaactcgagaactcgcttatcaccaa-ggagggcgccaggccgtttgtgagcaacctgccaccgtgacgcagtcacctgccaccaggccccagctccaccac-------------gcagcatgcgattcggaggtgcagacaccggagccataGCGCCATAGT i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36415824 0 + 80974532 C a score=1281198.000000 s hg38.chr1_KI270759v1_alt 260491 445 + 425601 TAGTGCATGCCAGATGATTTTTGCGTTTCCCACAGGATGTCAGTGAGCCT-TTTTCTCAGTCATGGCCAGCCCCAACAGAGAGGCAAGATGAGTTCCTCTTGGTTGTGATGCCTCTTTTCTTTTCAGTTCACACTTTATGCCCTTTGGCTTGCTGCCAGGTGCTACCTTTCACCCAAAAGAACCACAGGCTCCTCACGGATTTTGCATTCCTTCAGGGTCCTGCCAGTTACTGGCAAATTCAATGATAATTGTGCTCACTGTATAAAATACTTTCTGGAATAAGGTAAAATATGAATGAAAAA------------ATGCACAAATGCCAAACA----AATACAGTTGCTTGTGCTGAGATTTTGTTTTAAAGAAGAAAGA-GAAAAACAAAGAAATTAAGGACAGCATTGCGATCACTTTTCTTCCTCCAA-ACAAAAGCTTTCAAGCGCAACATGTTGATTTT s panTro4.chr1 225016616 445 + 228333871 TAGTGCATGCCAGATGATTTTTGCGTTTCCCACAGGATGTCAGTGAGCCT-TTTTCTCAGTCATGGCCAGCCCCGACAGAGAGGCCAGATGAGTTCCTCTTGGTTGTGATGCCTCTTTTCTTTTCAGTTCACACTTTATGCCCTTTGGCTTGCTGCCAGGTGCTACCTTTCACCCAAAAGAATCACAGGCTCCTCACGGATTTTGCATTCCTTCAGGGTCCTGCCAGTTACTGGCAAATTCAATGATAATTGTGCTCACTGTATAAAATACTTTCTGGAATAAGGTAAAATATGAATGAAAAA------------ATGCACAAATGCCAAACA----AATACAGTTGCTTGTGCTGAGATTTTGTTTTAAAGAAGAAAGA-GAAAAACAAAGAAATTAAGGACAGCATTGCTATCACTTTTCTTCCTCCAA-ACAAAAGCTTTCAAGCGCAACATGTTGATTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226383070 445 - 229942017 TAGTTCATGCCAGATGAGTTTTGCGTTTCCCACAGGATGTCCGTGAGCCT-TTTTCTCAGTCATGGCCAGCCCCAACAAAGGGGCAAGATGAGTTCATCTTGGTTGTGATGCCTCTTTTCTTTTCAGTTCACACTTTATGCCCTTTGGCTTGCTGCCAGGTGCTACCTTTCACCCAAAAGAACCACAGGCTCCTCACAGATTTTGCATTCCTTCACGGTCCTGCCAGTTACTGGCAAATTAAATTATAATTGTGCTCACTGTATAAAATACTTTCTGGAGTAAAGTAAAATATGAATGAAAAA------------ATGAACAAATCCCAGACA----AGTACAGTTGCTTGTGCTGAGATTTTGTTTTAAAGAAGAAAGA-GAAAAACAAAGAAATTAAGGACAACATTACTACTACTTCTCATCCTCCAC-ACAAAAGCTTTCAAGTGCAACATGTTGATTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140269507 428 - 143122389 ------------GATGATTTTTGCGTTTCCCACAGGATGTCAGTGAGCCT-TTTTCTCAGTCACGGCCAGCCCCAGCAGAGAGGCAAGATGAGTTCCGCTTGGTTGTGATGCC-----TCTTTTCAGTTCACACTTCATGCCCTTTGGCTTGCTGCCAGGTGCTGTCTTTCACCCCAAAGACCCACAGGCCCCTCATGGATTTTGCATTCCTTCAGGGTCCTGCCAGTTACTGGCAAATTACATGATAATTGTGCTCACTGTATAAAATACTTTCTGGAATAAGGTAAAATATGAATGAGAAA------------ATGAACAAATGCCAAACA----AATACAGTTGCTTGTGCTGAGATTTTGTGTTAAAGAAGAAATA-GAAAAACAAAGAAATTAAGGACAACATGACTGTCACTTCTCTTCCTCCAA-ACGAAAGCTTTCAAGTGCAACATGTTGATTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16978716 438 - 229590362 TAGTTCATGCCAGATGATTTT--TGTTTCCCACAGGATATCAGTGAGCCT-TTTTCTCAGTCATGGCCAGCCCCAACAGAGAGGCAAGATGATTTCATCTCGGTTGTGATACCTCCTTTCTTTTCAGTTCACACTTTACGCGCTTTGGCTTGCTACCAGGTGCTACTTTTCACCCAAAAGAACCACAGGCTCCTCAGGGATTTTGCATTCCTTCAGGGTCCTGCCAGCTACTGGCAAATTAAATGATAATTGTGCTCACTGTATAAAATACTTTCTAGAATAAGGTAAAATATGAATGAAAAA------------TTGAACCAATGCCAAACA----AATACAGTTGCTTGTGCTGAGATTTTGTTTTAAAGAAGAAAGA-GAAAAA-AAAGAAATTAAGGGCTACATTACTA----TTCTCTTCCTCCAA-ACAAAAGCTTTCAGGTGCAACATGTTGATTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223742081 438 - 227556264 TAGTTCATGCCAGATGATTTT--TGTTTCCCACAGGATATCAGTGAGCCT-TTTTCTCAGTCATGGCCAGCCCCAACAGAGAGGCAAGATGATTTCATCTCGGTTGTGATGCCTCCTTTCTTTTCAGTTCACACTTTACGCGCTTTGGCTTGCTACCAGGTGCTACTTTTCACCCAAAAGAATCACAGGCTCCTCAGGGATTTTGCATTCCTTCAGGGTCCTGCCAGCTACTGGCAAATTAAATGATAATTGTGCTCACTGTATAAAATACTTTCTAGAATAAGGTAAAATATGAATGAAAAA------------TTGAACCAATGCCAAACA----AATACGGTTGCTTGTGCTGAGATTTTGTTTTAAAGAAGAAAGA-GAAAAA-AAAGAAATTAAGGGCTACATTACTA----TTCTCTTCCTCCAA-ACAAAAGCTTTCAGGTGCAACATGTTGATTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16792279 438 - 220367699 TAGTTCATGCCAGATGATTTT--TGTTTCCCACAGGATATCAGTGAGCCT-TTTTCTCAGTCATGGCCAGCCCCAACAGAGAGGCAAGATGATTTCATCTCGGTTGTGATGCCTCCTTTCTTTTCAGTTCACACTTTACGCCCTTTGGCTTGCTACCAGGTGCTACTTTTCACCCAAAAGAACCACAGGCTCCTCAGGGATTTTGCATTCCTTCAGGGTCCTGCCAGCTACTGGCAAATTAAATGATAATTGTGCTCACTGTATAAAATACTTTCTGGAATAAggtaaaatatgaatgaaaaa------------ttgaACCAATGCCAAACA----AATACGGTTGCTTGTGctgagattttgttttaaagaagaaaga-gaaaaa-aaagaaattaagggcTACATTACTA----TTCTCTTCCTCCAA-ACAAAAGCTTTCAGGTGCaacatgttgatttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82590707 441 + 85787240 TAGTTCATGCCAGATGATTTTTGTGTTTCCCACAGGATATCAGTGAGCCT-TTTTCTCAGTCATGGCCAGCCCCAACAGAGAGGCAAGATGACTTCATCTCGGTTGTGATGCCTCCTTTCTTTTCAGTTCACACTTTACGCCCTTTGGCTTGCTACCAGGTGCTACTCTTCACCCAAAAGAACCACAGGCTCCTCAGGGATTTTGCATTCCTTCAGGGTCCTGCCAGTTACTGGCAAATTAAATGATAATTGTGCTCACTGTATAAAATACTTCCTGGAATAAGGTAAACTATGAATGAAAAA------------TTGAACCAATGCCAAACA----AATACGGTTGCTTGAGCTGAGATTTTGTTTTAAAGAAGAAAGAGGAAAAA-AAAGAAATTAAGGGCTACATTACTA----TTCTCTTCCTCCAA-ACAAAAGCTTTCAGGTGCAACATGTTGATTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14271198 421 - 49578535 TAGTTGACGCCAGATGATTTC-GTGTTTCTCGCAGG-TGCCAGCGAGCCC-TTTTCTCAGTCACGGTCAGCCCCGGAAGAGACGCAAGACGGGTTGGTTTCGGTTGTGACGCCTCTTTCCTTCTCAGCTGA---------CCCTTTGGCCTGCTGCCAGGTGCCAAGTTTCACC---------CACAGGCTCC--------------TTCCTTCAGGGTCTTGCCTGTTGCTGGCGAATTAACTGCTCCTTGTGCTCACTGTATAAAATGCCTTCTGAAATAAGGTAAAATATGAACGAAGGAAGGAGTGAATGCATGAACAAATGCCAAACA----AATTTCATTGCTTGTGCTGAGATTAT-TTCTAAAGAAGAAATG-GAAGAA-AAAGAAATTAAGGACAACATGACTCTTGCTTCTCTTCCTCCAC-ACAAAAGCTTTTCAGTGCAACATGTTGATTTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36415824 405 + 80974532 TGGTTCATG-CAGATTACTTTTGTGTTTTCCACAGAGGGTCAGTGGACCTCTTTTCCCAATCTTGGCCAGCCCCAGGCCAAATGTGAAGCGAGTGGCATTGGGTTGTGGGGCCTCCCTTCCTTGCA-----------------CCTGCCTTGCTTCCCAGCACTGCCTCCTACCT--GAGGACCACCCGTTGTACCTAGAG-----------TCAGGGCCCTG--AGTTAATGGCAATTTAGGTGATCATTGTG---------TAAAACCTTTTCTGGAATAAGGTA---TGTGAATGAATGGAGCAGTGAGTGAAAGAATAAATACCAAACAGATGAACGCCATTGGTTGTGCTCAGATTATTTTTAAAAG---------GAAAAATAAAGACATGAAGAGCCCAAGTATGA-----GTCCTTCTTCCAAGGGAAAAGCTTTCAGGTGAAACCCACTGAGTTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I a score=902518.000000 s hg38.chr1_KI270759v1_alt 260936 329 + 425601 TAAAATTCCTTTCTGggctgggcgtggtggctcacacttgtaatcccagcactttgggaggccaaggcaggcggatcagaagatcaggagttcgagaccagcc--tggccaacatggtgaaaccccatctctact-aaaatacaaaaattatccaggcatggtggtgtgtgcctctaatcccagctactcaggaggctgagagagaagaatcacttgaatccgggagatggaggttgcagaaagccgagattgcaccactgcactccagcctgggtgacagagtgagactccaactaaaataaaTTaataaatacatgaataaataaaaaa----a s panTro4.chr1 225017061 328 + 228333871 TAAAATTCCTTTCTGggctgggcgcggtggctcacacttgtaatcccagcactttgggaggccaaggcaggcggatcagaagatcaggagttcgagaccagcc--tggccaacatggtgaaaccccatctctact-aaaatacaaaaattatccaggcatggtggtgtgtgcctctaatcccagctactcaggaggctgagagagaagaatcacttgaatccgggagatggaggttgcagagagccgagattgcaccattgcactccagcctgggtgacagagtgagactccaactaaaataaattaataaatacatgaataaataaaaaa----- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226383515 328 - 229942017 TAAAATTCCTTTCTGggccgggcacggtggctcacacctgtaatcccagcattttgggaggccaaggtgggcagatcacaagatcaggagttcgagaccagcc--tggccaacatggtgaaaccccgtctctact-aaaaatacaaaattagccaggcatggtggtgtgtgcctgtactcccagctactcaggaggctgagacagaagaatcacctaaacccgggagatggaggttgcagagaggcaagattgcaccactgcactccagcctgggtgacagagtgagactccatctaaaataaaTTAATAAATACATGAATAAATAAAAAA----- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140269935 328 - 143122389 TAAAATTCGTTTCTGggctgggcgtggtggctcacacttgtaatcccagcactttgggaggccaaggcgggcggatcacaagatcaagggttcgagaccagcc--tggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggtgtgtgcctgtaatcccagctactcaggaggctgagacagaagaatcacttgaacccggaagatggaggttgcagagagccgagattgtaccactgcactccagcctgggtgacagagtgagactccatctaaaataaatt-ataaatacatgaataaataaaaaa----- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16979154 334 - 229590362 TAAAATTCCTTTCTGggctgggcgcagtggctcacacctttaatcccagcactttgggaggccaaggcgggcggatcacaaggtcaggagtttgagaccagcc--tggccaacatggtgaaatcctgtctctactaaaaatacaaaaattaaccaggcatggtggtgtgtgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaactcaggagatggatttggcagtgagccgagattgcaccactccactccagcctgggcgacagagtgagacttcgtctaaaataaataaataaataaatgaatacataaaaaataaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223742519 334 - 227556264 TAAAATTCCTTTCTGggctgggcgcagtggctcacacctttaatcccagcactttgggaggccaaggcgggcggatcacaaggtcaggagtttgagaccagcc--tggccaacatggtgaaatcctgtctctactaaaaatacaaaaattaaccaggcatggtggtgtgtgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaactcaggagatggaggtggcagtgagccgagattgcaccactccactccagcctgggtgacagagtgagacttcgtctaaaataaataaataaataaatgaatacataaaaaataaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16792717 330 - 220367699 taaaattcctttctgggctgggcgcagtggctcacacctttaatcccagcactttgggaggccaaggcaggcggatcacaaggtcaggagtttgagaccagcc--tggccaacatggtgaaatcctgtctctactaaaaatacaaaaactaaccaggcatggtggtgtgtgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaactcaggagatggaggtggcagtgagccgagattgcaccactccactccagcctgggcgacagagtgagacttcgtcta----aaataaataaatacatgaatacataaaaaataaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82591148 334 + 85787240 TAAAATTCCTTTATGggctgggcgcagtgacccacacctttaaccccagcactttgggaggccaaggcgggcggatcacaaggtcaggagtttgagaccagcc--tggccaacatggtgaaatcccatctctactaaaaatacaaaaattaaccaggcatggtggtgtgtgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaacccaggagatggaggtggcagtgagctgagattgcaccactgcactccagcctgggcgacagagtgagactccatctaaaataaataaataaataaaTGAATACACAAAAAATAAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14271619 302 - 49578535 TAAAATTTCTTTCTGggccatgcgtggtggctcaagcctgtaatcccagcactttgggaggccaaagcgggtggatcacgaggtcaggagttcaagaccagccagtggccaacatgttaaaaccccatctctactaaaaatacaaaaattagctggatgtggtggtgcacacctatagtcccagctacttgggaggctgaggcagaagaatcccttgaacccaggaggcaggggttgcagtgagctgagattg------tgcactccagcctgggtggcagagcaagactccatct----------------------------caaaaaataaaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36416229 0 + 80974532 C a score=2997057.000000 s hg38.chr1_KI270759v1_alt 261265 919 + 425601 taaaATTCCTTTCTGTAGCCAC-TGTGAGCCAAAAGCACGGGCTTAAACTGCAGAGTGCTGTGTGTGCACTCACAAATCCCAGGTTCCCAGAGTGGAGAGCCCTGCACCCCAGCCGCGGCCAAGGGTCAGAAGTAGCAACTGGTGATTAATCAAGTGGCTCCTGTCTTAGG--ACAGTCAGCGTTTATTGTCTCTGCAGGCCAGACTATAGAAATAAGCAGACCCACAAAAGCCAGCAATTAATATTTCCCCGGAGAGATTCCAGATGCTGCCGGGTGGAC-TGTGACATGCTAGCATTCTTCCTGCTCCTGATTTATTCCATTGTGTGGAAGAGCTT------------------CCACAGAAATGACT-C-TTTGGATTTTTCAGGAAATGTTTCAAGCCTTCTTATTCAGACACCCTTTCAGCGTCCAGTGATGGACGAAGCTGTGCCCTAGAGTCCCACCTTCCCAAACAGTGGGCA-----ACTTGCTTTCTCCAGCCTCCTGTCCCCTTCCGAGCACCCTTCACCCCTCCCATCCCCAGGAGTCGCTGAATAGGTCCCATGGGAGAGAAATGACAGCTTGAAGTGATGACCCATCCCACCC-CAT-CAAATGTTGGCATTTTACTCTGGCCTCCAAAGGCATGGGGGGATGACCCATGGCAGGAATACAGGC----CTTACAGAGA-------GGTTCA-----------------CTCCAACC-----------AAACCATGCTGCTCCCCCAGTGGCCCACCATGAAAACCTCTGGAAAACCAACTTATTTGCCAAATGACT-CCCATGAGCAGGCCTTTGCAAAATTTCAGAGTGTTGTACAGCTGCATCCCAGGACAAAACTCTTT--CTTTTCAGTACTAACAGTGCAAGTAGAATAGGGTCGTG-----------GTGGAGCATCCCATTGTCT---------------TCATTCCTGGTCCACTAATTTTCATCTGAGTTAAGAGTTTTGGGTTTGAATTCAAGG s panTro4.chr1 225017389 919 + 228333871 TAAAATTCCTTTCTGTAGCCACATGTGAGCCAAAAGCACGGGCTTAAACTGCAGAGTGCTGTGTGTGCACTCACAAATCCCAGGTTCCCAGAGTGGAGAGCCCTGCACCCCAGCCGCGGCCAAGGGTCAGAAGTAGCAACTGGTGATTAATCAAGTGGCTCCTGTCTTAGG--ACAGTCAGCGTTTATTGTCTCTGCAGGCCAGACTGTAGAAATAAGCAGACCCACAAAAGCCAGCAATTAATATTTCCCCGGAGAGATTCCAGATGCTGCTGGGTGGAC-TATGACATGCCAGCACTCTTCCTGCTCCTGATTTATTCCATTGTGTGGAAGAGCTT------------------CCACAGAAATGACT-C-TTTGGATTTTTCAGGAAATGTTTCGAGCCTTCTTATTCAGACACCCTTTCAGCGTCCAGTGATGGACGAAGCTGTGCCCTAGAGTCCCACCTTCCCAAACAGTGGGCA-----ACTTGCTTTCTCCAGCCTCCTGTCCCCTTCCGAGCACCCTTCACCCCTCCCATCCCCAGGAGTCGCTGAGTAGGTCCCATGGGAGAGAAATGACAGCTTGAAG-GAAGACCCATCCCACCC-CAT-CAAATGTTGGCATTTTACTCTGGCCTCCAAAGGCATGGGGGGATGACCCATGGCAGGAATACAGGC----CTTACAGAGA-------GGTTCA-----------------CTCCCACC-----------AAACCATGCTGCTCCCCCAGTGGCCCACCATGAAAACCTCTGGAAAACCAACTTATTTGCCAAATGACT-CCCATGAGCAGGCCTTTGCAAAATTTCAGAGTGTTGTACAGCTGCATCCCAGGACAAAACTCTTT--CTTTTCAGTACTAACAGTGCAAGTAGAATAGGGTCGTG-----------GTGGAGCATCCCATTGTCT---------------TCATTCCTGGTCCACTAATTTTCATCTGAGTTAAGAGTTTTGGGTTTGAATTCAAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226383843 921 - 229942017 TAAAATTCCTTTCTGTAGCCACATGTGAGCCAAAAGCACGGGCTTAAACTGCAGAGTGCTGTGTGTGCGCTCACAAATCCCAGGTTCCCAGAGTGGATAGCCCTGCTCCCCAGCCGCGGCCAAGGGTCAGAAGTAGCAACTGGTGATTAATCAAGTGGTTCCTGTCTTAGG--ACAGTCAGCGTTTATTGTCTCTGCAGGCCAGACTGTAGAAATAAGCAGACCCACAAAAGCCAGCAATTAATATTTCCCCGGAGAGATTCCAGATGCTGCCGGGTGGAC-TGTGACATGCCAGCGCTCTTCCTGCTCCTGATTTATTCCATTGTGTGGAAGAGCTT------------------TCAGAGAAATGACT-C-TTTGGATTTTTCAGGAAATGTTTCGAGCCTTCTTATTCAGACACCCTTTCAGCGTCCAGTGATGGACGAAGCTGTGCCCTAGAGTCCCACCTTCCCAAACAGTGGGCA-----ACTTGCTTTCTCCAGCCTCCTGTCCCCTTCCGAGCACCCTTCACCCCTCCCATCCCCAGGAGTCGCTGAGTAGGTCCCATGGGAGAGAAATGACAGCTTGAAGTGATGACCCATCCCACCC-CATCCAAATGTTGGCATTTTACTCTGGCCTCCAAAGGCATGGGGGGATGACCCATGGCAGGAATACAGGC----CTTACAGAGA-------GGTTCA-----------------CTCCAACC-----------AAACCATGCTGCTCCTCTAGTGACCCACCATGAAAACCTCTGGAAAACCAACTTATTTGCCAAATGACT-CCCATGAGCAGGCCTCTGCAAAATTTCAGAGTGTTGTACAGCTGCATCCCAGGACAAAACTCTTT--CTTTTCAGTACTAACAGTGCAAGTAGAATAGGGTCGTG-----------GTGGAGCATCCCATTATCT---------------TCATTCCTGGTCCACTAATTTTCATCTGAGTTAAAAATTTTGGGTTTGAATTCAAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140270263 928 - 143122389 taaaaTTCCTTTCTGTAGCCACATGTGAGCCAAAAGCATGGGCTTAAACTGCAAAGTGCTGTGTGTACGCCCACAAATCCCAGGTTCCCAGAGTGGATAGCTCTGCACCGCAGCCGCGGCCAAGGGTCAGAAGTAGCAACTGGTGATTAATGAAGTGGCT-CTGTCTTAGG--ACAGTCAGTGTTTATTGTCTCTGCAGCCCAGACTGTAGAAATAAGCAGACCCACAAAAGCCAGCAATTAATATTTCCCCAGAGAGATTCCAGATGCCGCTGGGTGGACTTGTGACATGCCAGCGCTCTTCCTGCTCCTGATTTATTCCGCTGTGTGGAAGAGCTT------------------CCACAGAAATGACT-C-TTTGGCTTTTTCAGGAAATGTTTCGAGCCTTCTTATTCAGACACCCTTTCAGCGTCCAGTGATGGACGAAGCTGTGTCCTAGAATCCCACCTTCCCAAGCAGTGGGCA-----ACTTGCTTTCTCCTGCCTCCCGACCCCTTCCGAGCACCCTTCACCCCTCCCATCCCCAGGAGTCGCTGAGTAGGTCCCATGGGAGAGAAATGACAGCTTGAAGTGATGACCCATCCCACCC-CATCCAAATGTTGGCATTTTACTCTGGCCTCCAAAGGCACTGGGGGATGACCCATGGCAGGAATACAGGC----CTTACAGAGA-------GGTTCA-----------------CTCCAACCAAACCATACTGAAACCATACTGCTCCTCCAGTGGCCCACCATGAAAACCTCTGGAAAACCAACTTATTTGCCAAAAGACT-CCCATGAGCAGGCCTCTGCAAAATTTCAGAGTGTGGTACAGCTGCATCCCAGGACAAAAC----T--CTTTTCAGTACTAACAGTGCAAGTAGAATAGGGTCGTG-----------GTGGAGCATCCCATTGTCT---------------TCATTCCTGGTCCACTAATTTTCATCTGAGTTAAGAGTTTGGGGTTTGAATTCAAGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16979488 909 - 229590362 taaaATTCCTTTCTGTAGCCACATGTGAGCCAAGAGCATGGGCTTAAACTGCAGAGTGCTGTGTGTGCGCTCACAAATCCCAGGTTCCCAGAGTGGAGAGCCCTGCTCCCCAGCCGGGGCCAAGGGTCAGAAGTAGCAACTGGTGATTAATCAAGTGGCTCCTGTCTTAGG--ACAGTCAGCGTTTATTGTCTCTGCAGGCCAGACTGTAGAAATAAGCAGACCCACAAAGGCCAGCAATTAATATTTCCCCGGAGAGATTCCAGATGCTGCTGGGTGGAC-TGTGACATGCCAGCGCTCTTCCTGCTCCTGATTTATGCCATTGTGTGGAAGAGCTT------------------CCACAGAAATGACT-C---TGGGTTTTTCAGGAAATGTTTCGAGGCTTC---TTCAGACACCGTTTCAGCGTCCAGTGATGGACGAAGCTGTGCCCTAGAGTCCCACCTTCCCAAACAGTGGGCT-----ACTTGCTTTCTCCAGCCTCCTGTCCCCTTGCGAGCACCATTCACCCCTCCCATCCCCAGGAGTCGCTGAGTAGGTCCCATGGGAGAGAAATGACAGCTTGAAG---TGACCCATCCCACCC-CATCCAAATGCTGGCATTTTACTCTGGCCTCCAAAGGCACTGGGGGGTGACCCGTGGCAGGAATACAGGC----CTTACGGAGA-------GGTTCG-----------------CTCCAACC-----------AAACCATGCTGCTCCTCCAGTAGCCCACTGTGAAAACCTCGGGAACACCAACTAATTTACCAAA-GACC-CCCATGAGCAGGCGTCTGCAACCTTCC--AGTGTTGTCCGGCCGCATCCCAGGAC-AAACTCGTT--CTTTTCAGCACTAACAGTGCACGTAGACTGGGGTCGTG-----------GGGGAGCATCCCATTGTCT---------------TCATTCCTGGTCCAGTAATTTTCACCTGAGCTAAGAGTTTTGGGTTTGAATTCAAGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223742853 909 - 227556264 taaaATTCCTTTCTGTAGCCACATGTGAGCCAAGAGCATGGGCTTAAACTGCAGAGTGCTGTGTGTGTGCTCACAAATCCCAGGTTCCCAGAGTGGAGAGCCCTGCTCCCCAGCCGGGGCCAAGGGTCAGAAGTAGCAACTGGCGATTAATCAAGTGGCTCCTGTCTTAGG--ACAGTCAGCGTTTATTGTCTCTGCAGGCCAGACTGTAGAAATAAGCAGACCCACAAAGGCCAGCAATTAATATTTCCCCGGAGAGATTCCAGATGCTGCCGGGTGGAC-TGTGACATGCCAGCGCTCTTCCTGCTCCTGATTTATGCCATTGTGTGGAAGAGCTT------------------CCACAGAAATGACT-C---TGGGTTTTTCAGGAAATGTTTCGAGGCTTC---TTCAGACACCGTTTCAGCGTCCAGTGATGGACGAAGCTGTGCCCTAGAGTCCCACCTTCCCAAACAGTGGGCT-----ACTTGCTTTCTCCAGCCTCCTGTCCCCTTGCGAGCACCCTTCACCCCTCCCATCCCCAGGAGTCGCTGAGTAGGTCCCATGGGAGAGAAATGACAGCTTGAAG---TGACCCATCCCACCC-CATCCAAATGCTGGCATTTTACTCTGGCCTCCAAAGGCACTGGGGGGTGACCCGTGGCAGGAATACAGGC----CTTACGGAGA-------GGTTCG-----------------CTCCAACC-----------AAACCATGCTGCTCCTCCAGTAGCCCACCGTGAAAACCTCGGGAACACCAACTAATTTACCAAA-GACC-CCCATGAGCAGGCCTCTGCAACCTTCC--AGTGTTGTCCGGCCGCATCCCAGGAC-AAACTCGTT--CTTTTCAGCACTAACAGTGCACGTAGACTGGGGTCGTG-----------GGGGAGCATCCCATTGTCT---------------TCATTCCTGGTCCAGTAATTTTCACCTGAGCTAAGAGTTTTGGGTTTGAATTCAAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16793047 910 - 220367699 taaaattcctttctGTAGCCACATGTGAGCCAAGAGCATGGGCTTAAACTGCAGAGTGCTGTGTGTGTGCTCACAAATCCCAGGTTCCCAGAGTGGAGAGCCCTGCTCCCCAGCCGGGGCCAAGGGTCAGAAGTAGCAACTGGTGATTAATCAAGTGGCTCCTGTCTTAGG--ACAGTCAGCGTTTATTGTCTCTGCAGGCCAGACTGTAGAAATAAGCAGACCCACAAAGGCCAGCAATTAATATTTCCCCGGAGAGATTCCAGATGCTGCCGGGTGGAC-TGTGACATGCCAGCGCTCTTCCTGCTCCTGATTTATGCCATTGTGTGGAAGAGCTT------------------CCACAGAAATGACT-C---TGGGTTTTTCAGGAAATGTTTCGAGGCTTC---TTCAGACACCCTTTCAGCGTCCAGTGATGGACGAAGCTGTGCCCTAGAGTCCCACCTTCCCAAACAGTGGGCT-----ACTTGCTTTCTCTAGCCTCCTGTCCCCTTGCGAGCACCCTTCACCCCTCCCATCCCCAGGAGTCGCTGAGTAGGTCCCATGGGAGAGAAATGACAGCTTAAAG---TGACCCATCCCACCC-CATCCAAATGCTGGCATTTTACTCTGGCCTCCAAAGGCATTGGGGGGTGACCCGTGGCAGGAATACAGGC----CTTACAGAGA-------GGTTCA-----------------CTCCAACC-----------AAACCATGCTGCTCCTCCAGTGGCCCACCGTGAAAACCTCGGGAACACCAACTAATTTACCAAATGACT-CCCATGAGCAGGCCTCTGCAACATTCC--AGTGTTGTCCGGCTGCATCCCAGGAC-AAACTCATT--CTTTTCAGCACTAACAGTGCACGTAGACTGGGGTCGTG-----------GGGGAGCATCCCATTGTTT---------------TCATTCCTGGTCCAGTAATTTTCACCTGAGCTAAGAGTTTTGGGTTTGAATTCAAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82591482 909 + 85787240 TAAAATTTCTTTCTGTAGCCACATGTGAGCCAAGAGCACGGGCTTAAACTGCAGAGTGCTGTGTGTGTGCTCACAAATCCCAGGTTCCCAGAGTGGAGAGCTCTGCTCCCCAGCCGGGGCCAAGGGTCAGAAGTAGCAACTGGTGATTAATCAAGTGGCTCCTGTCTTAGG--ACAGTCAGCGTTTATTGTCTCTGCAGGCCAGACTGTAGAAATAAGCAGACCCACAAAGGCCAGCAATTAATATTTCCCCGGAGAGATTCCAGATGCTGCCGGGTGGAC-GGTGACATGCCAGCGCTCTTCCTGCTCCTGATTTATGCCATTGTGTGGAAGAGCTT------------------CCACAGAAATGACT-C---TGGGTTTTTCAGGAAATGTTTCGAGGCTTC---TTCAGACACCCTTTCAGTGTCCAGTGATGGATGAAGCTGTGCCCTAGAGTCTCACCTTCCCAAACAGTGGGCT-----ACTTGCTTTCTCCAGCCTCCTGTCCCCTTCCGAGCACCCTTCACCCCT-CGATCCCCAGGAGTCGCTGAGTAGGTCCCATGGGAGAGAAATGACAGCTTGAAG---TGACCCATCCCGCCC-CATCCAAATGTTGGCATTTTACTCTGGCCTCCAAAGGCATTGGTGGGTGACCCGTGGCAGGAACACAGGC----CTTACAGAGG-------GGTTCA-----------------CTCCAACC-----------AAACCATGCTGCTCCTCCAGTGGCCCACCGTGAAAATCTCAGGAAAACCAACTAATTTACCAAATGACT-CCCATGAGCAGGCCTCTGCAACATTCC--AGTGTTGTCCGGCTGCATCCCAGGAC-AAACTCGTT--CTTTTCAGCACTAACAGTGCACGTAGACTAGGGTCGTG-----------GGGGAGCATCCCATTGTCT---------------TCATTCCTGGTCCAGTAATTTTCACCTGAGCTAAGAGTTTTGGGTTTGAATTCAAGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14271921 915 - 49578535 taaaaTTCCTCTCTGTAGCCACATGTGAGCCGAGAGCACAGGTTTACACTGCAGAGTGCTGTGTGTGTGCTCACAAATCCCAGGTTCCCAGCGTGGATAGCCCGGCTCCCCAGCGGGGGCCAGGGGTCAGAAGTAGCAACTGGTGATTAATCAAGTGGCTCCTGTCTCAGG--ACAGGCAGCGTTGACTGTCGCGGC-GGCCAGACTGTAGAAATCAGCAGATCCACAAAGGCCAGCAGTTAATAGTTCCCTGGAGATGTTCCAGATGCTGCCGGCCAGAC-TGTGACATGCCGGCGCTCTTCCTGCTCCTGATTTATTCCA--GTGTGGAAGAGCTTACC------GGGGAGCTGCCACAGGAATGATTGC-TTTGGGCTTTTCAGGAGCTGTTTCGAGGCTTCTTACTCCGACACCCTTTCAGTGTCCAGTGGTGGACGAAGCCGTGCCCCAGAGTCCCACCTTCCCAAACAGTGGACA-----ACTTGCTGTTCCCAGCCTCCTGT-CCCTTCCAGGCACCCTTCACCCCTCCCACCCCCAGGAGTCGCTGAGCAGGTCCCATAGGAGAGAGGTGACAGCTTGAAG---TGACTCATCCCACCC-CATCCACATGCTGGCATTTTACTCTGGCCTCCAAAGGCACTGGGGGATGACCAGTGGTGGGAATGCAGGC----CTTACAGAGA-------GTTTCA-----------------CTCCAACC-----------AAACCGTACTGCCTCTCCGGCAGTCCACCGGGAAAGCCTCT-GAAAACCAACTTATTTGCCAAACAACT-CCCATGACCTGACCTCTGCAAAATTTCAGAGTGTTGTACAGCTGCCTCTCAGGACAAAAC---TT--CTTTTCTGCACTAACA--GCAAATAGAATAGGGTCGTG-----------GTGGAG-ATTCCACTGTCT---------------TCGCTGCCTGTCCAAAAATTTTAATC-----TAAGAATTTTGGGTTTGAATTCAAGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36416229 980 + 80974532 TAAAACTTCCTTTTCTAGCC---------CAGAGCACACAGGGTCACACTTTAAATGGCAACATGTGCAGTCTTGTATCCTAGGCTCCCTGAGAGGACAGCCCTGCCCCCTAGCTCGGGCAAAGGGTCAGAAGCAGCAACTGGTGATTAATCAGGTGGCTCCTGTCTTAGGACACACTCAACGTTTACTGTCTCTGCAGACCAGACTGTGGAAATAAGCAGACCCAGGAAGGCCAGCAATTAATATTTCCTGGGAGATATTCCAGATGCTGCTGGGTAGAC-CATGACATGCAAG-ACTCTTCCTGCTTCTGATTTATTTCAT--CATGGAAGAGCTTCCCTTACATGGGGAGTTTCTGCAGAAGTGACC-CATTTTGGTTTTTCAGGAGCTATTTCAAGACTTCTTATTTGGCCACCATTTCAGGGTCCAATG--GGGCAGAGCTGTGCCCCATAGTCCCATCTTCCCAAACGGTGAAGTGACAGATCCACCATCTCCAGCCACCATTCCCAACAC-AGCACCCTT---CCCTCCTACCACCAGGAGCTGCTG-GTAGG-CCCACAGG-GAGAGACCATGGCTTGAAG---TGACCTCCCCCACCCTTAGCCACACGTTGACATTTCACTGTGGTCTCCAGTGGCCTACAGGGGTGACCAGTGGCAGGATCACAGGCTGTACTCACAGAGAATGTTTTGGTTGGGAGGGCTTTCTTGCATTCTTCAACT----------TAACCCATACAGATAACTCTGTGGTCCATCATGAATA-CACTGAAACACTGGCTTGTTAGCTGAGTGGCTCCCCATTAGTTGACCTCTGCAAAATTGTGGGGTGGGTTAGAGCTGGATTTCAGGACAAAGCTCTTCTACCTTTAAATGTTGAGAGGGCCAGCAGGCTAGGGTTAGGCAGCAGGAGGTGGGGGGCATGCCATTGCCTTTCCATTCTTTGTTATCATTCCCTGTCCAA-AGCTTTCATCTAAATTAAGAGTCTTTGGTTAGAATTCAAAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I a score=15656.000000 s hg38.chr1_KI270759v1_alt 262184 5 + 425601 GAAAT s panTro4.chr1 225018308 5 + 228333871 GAAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226384764 5 - 229942017 GAAAT i ponAbe2.chr1 C 0 I 3352 s nomLeu3.chr5 140271191 5 - 143122389 GAAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16980397 5 - 229590362 GAAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223743762 5 - 227556264 GAAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16793957 5 - 220367699 GAAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82592391 5 + 85787240 GAAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14272836 5 - 49578535 AAAAT i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417209 0 + 80974532 C a score=1707591.000000 s hg38.chr1_KI270759v1_alt 262189 629 + 425601 GAAAAGTTCTTAAAGG-ggccgggcacggtggctcacacctgtaatcccagcactttggaaggtggaggcaggcagatcacctgcggtctggagttcaggaccagcctggccagcatggcaaaaccccgtctctactaaaaat--taaaa-aa----aatagccggggttaatcccagctactcaggaggctgaggca-ggagaattgcttgaacttgggaggttcagtggaggttgcagtgaggttgcagtgagccgagatcatgtccctgcactccagcctgggcaacagagtgaaactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGAAGCTCTCAAA--GGGCCTGAgccaggcaccgtggctcatacatgtaatcccaacactttgggaagccaaggcagcaggatcacttgagctcaggagttcagcctgggcaacagagtgagactctatctccacaaaaaatgttttttaaaaattagccaggtgtggtggtgcatg-cctgtagtcctggtgggtggccaagtcaggaggatcgcttgagcgtaggaggttgaggctgcagtgagctatgatcatatccctgcccttcagcctgggcaacagagtgagaccttgtctcaaaaa s panTro4.chr1 225018313 626 + 228333871 GAAAAGTTCTTAAAGG-ggccgggcacggtggctcacgcctgtaatcccagcactttggaaggtggaggcaggcagatcacctgcggtctggagttcgggaccagcctggccagcatggcaaaaccctgtatctactaaaaat--aaaaa-aa-aataatagccggggttaatcccagctactcaggaggctgaggca-ggagaattgcttgaacttgggaggttcagtggaggttgcagtgaggttgcagtgagccgagatcatgtccctgcactccagcctgggcaacagagtgaaactccgtctc------aaaaaaaaaaaaaaaaaaaaaaaagaaGCTCTCAAA--GGGCCTGAgccaggcaccgtggctcatacatgtaatcccaacactttgggaagccaaggcagcaggatcacttgagctcaggagttcagcctgggcaacagagtgagactctatctccacaaaaaatgttttttaaaaattagccaggtgtggtggtgcacg-cctgtagtcctggtgggtggccaagtcaggaggatcgcttgagcctaggaggttgaggctgcagtgagctatgatcatatccctgcccttcagcctgggcaacagagtgagaccttgtctcaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226388121 627 - 229942017 TAAAAGTTCTTAAAGG-ggccgggcacggtggctcacgcctgtaatcccagcactttgggagatggaggcaggcagatcacctgcggtctggagttcaggaccagcctggccagcatggcgaaaccccgtttttactaaaaat--aaaaa-aa----attagccggggttaatcccagctactcaggaggctgaggca-ggagaattgcttgaacttgggaggttcagtggaggttgcagtgaggttgcagtgagccaagatcatgtccctgcactccagcctgggcaacagagtgaaactccatctc-aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGCTCTCAAA---GGCCTGagccaggcaccacggctcatacatgtaatcccaacactttgggaagccaaggcaggaggatcacttgagctcaggagttcagcctgggcaacagagtgagactctatctctacaaaaaatgttttttaaaaattagccgggtgtggtggtgtacg-cctgtagtcctggtgggtggccaagtcaggaggatcacttgagcctgggaggttgaggctgcagtgagctatgatcatatccctgcccttcagcctgggcaacagagtgagaccttgtctcaaaaa i ponAbe2.chr1 I 3352 C 0 s nomLeu3.chr5 140271196 604 - 143122389 AAAAAGTTCTTAAAGG-ggccaggcgtggtggctcacgcctgtaatcccagcactttgggaggtggaggcaggcagatcacctgtggtctggagttcaggaccagcctggccagcatggcaaaaccccgtctctactaaaaat--aaaaa-aa----attagccggggttagtcccagctactcaggaggctgaggca-ggagaattgcttgaacttgggaggt----------------ggaggttgcagtgagccgagatcatgcccctgcactccagcctgggcgacagagtgaaactccatctc-----------aaaaaaaaaaaaaaaaaaaaaaGCTCTCAAAGGGGGCCTGAAccaggcaccgtggctcatacatgtaatcccagcactttgggaagccaaggcagcaggatcacttgagctcaggagttcagcctgggcaacagagtgagactccatctctacaaaaaatgttttttaaaaattagccgggtgtggtggtgcacg-cctgtagtgccggcgggtggccaagtcaggaggatcgcttgagcctgggaggttgaggctgcagtgagctctgatcacatccctgcccttcagcctgagcgacagagtgagaccttgtctcaagaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16980402 605 - 229590362 AAAAAGTTCTTATAGG-ggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggtggaggagggcagatcccctaaggtctggagttcagggccagcctggccaacatggcgaaaccccgtctctactaaacat--aaaaa-aaaaaaagttgccggggataatcccagctactcaggaggctgaggca-ggagaattgcttgaactcaggaggt----------------ggaggttgcaatgagttgagatcatgcccctgacctccagtctgggcaacagagtgaaactccatatc------------aaaaaaaaaaaaagaagaaaaGCTCTCAAA--GGGCCTGAgccagacaccgtggctcacacatgtaatcccaacactttgggaagccaaggcaggaggatcccttgagctcaggagttcagccgtagcaacatagtgtgacttcatctctacaaaaaatgcttttaaaaaattagccgggtgtggtggtgcacg-cctatcgtcccggggggtggccaagtcaggagggtcgcttgagcctgggaggttgaggctgcagtgagctatgatcatatccctgcccttcagcctgggcaacagactgagacctggtctcaaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223743767 608 - 227556264 AAAAAGTTCTTATAGG-ggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggtggaggagggcagatcccctaaggtctggagttcagggccagcctggccaacatggcgaaaccccgtctctactaaaaataaaaaaa-aaaaaaagttgccggggttaatcccagctactcaggaggctgaggca-ggagaattgcttgaactcaggaggt----------------ggaggttgcaatgagttgagatcatgcccctgacctccagtctgggcaacagagtgaaactccatctc-----------aaaaaaaaaaaaaagaagaaaaTCTCTCAAA--GGGCCTGAgccagacaccgtggctcacacatgtaatcccaacactttgggaagccaaggcaggaggatcccttgagctcaggagttcagcctgagcaacatagtgtgacttcatctctacaaaaaatgtttttaaaaaattagccgggtgtggtggtgcacg-cctgtcgtcccggtgggtggccaagtcaggagggtcgcttgagcctgggaggttgaggctgcagtgagctatgatcatatccctgcccttcagcctgggcaacagactgagacctggtctcaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16793962 617 - 220367699 AAAAAGTTCTTatagg-ggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggtggaggagggcagATCCCCTAAGGTCTGgagttcagggccagcctggccaacatggcgcaaccccgtctctactaaaaat--taaaa-aaaaaaagtagccggggttaatcccagctactcaggaggctgaggca-ggagaattgcttgaactcaggaggt----------------gaaggttgcagggagccgagatcatgcccctgccctccagtctgggcaacagagtgaaactccatctcaaaaaaaaaaaaaaaaaaaaaagaagaagaaaagctctCAAA--GGGCCTGAGCCAGACAccgtggctcacacatgtaatcccaacactttgggaagccaaggcaggaggatcacttgagctcaggagttcagcctgggcaacatggtgcgacttcatctctacaaaaaatgttttttaaaaattagccgggtgtggtggtgcacg-cctgtcgtCCCGGCGGGTAGCCAAgtcaggagggtcgcttgagcctgggaggttgaggctgcagtgagctacgatcatatccctgcccttcagcctgggcaacagactgagacctggtctcaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82592396 602 + 85787240 AAAAAGTTCTTACAGG-ggccaggcgtggtggctcatgcctgtaatcccagcactttgggaggtggaggagggcagatcccctaaggtctggagttcaaggccagcctggccaatgtggcgaaaccccatctctactaaaa----aaaaa-aaaaaaagtagccggggttaatcccagctacttaggaggctgaggca-ggagaattgcttgaactcaggaggt----------------ggaggttacagtgagccgagatcatgcccctgccctccagtctgggcaacagagtgaaactccatctc------------aaaaaaaaaaaaaaaagaaaaGCTCTCAAA--GGGCCTGAgccagacaccgtggctcacacatgtaatcccaacactttgggaagccaaggcaggaggatcccttgagctcaggagttcagcttgggcaacatagtgcgacttcatctctacaaaaaatgttttttaaaaattagccgggtgtggtggtgcatg-cctgtcatcccggtgggtggccaagtcaggagggtcgcttgagcctgggagtttgaggctgcagtgagctacgatc-tatccctgcccttcagcctgggcaacagactgagacctggtctcaaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14272841 599 - 49578535 AAAAACTTCTCAAAGGTGTccggacacagtggctcattcctgtaatcccagcagtttgggaggtggaggcaggcagatcacctgaggtctggagttcagggccagcttggccaacacgggataaccccatctctactaaaaat--taaaattaaaaaattcgctggggttactcctagctactcaggaggctgaggcctgtagaattgcttgaaccggggaggt----------------ggaggttgccgtgagccgagatcgtaccactgcactgcagcctgggtgacagagcgagactccatctc------------------aaaagaaaaaaaaaaaTTCTCTAA--G----TGACccaggcacggtggctcacacatgtaatcccagcactttgggaggccaaggcaggaggatcacttgagctcaggagttcaacctgggcaacatagtgagattccatctctgcaaaaaatgttattaaaaaattagccaggtgtgttggtgcacgacttgcaggcctggcgagtggccgagtcaggaggatcacctgagcctcggaggctgaggctgcagcgagctatgatcatatccctgtatttcagcctgggcaacagagtaagatcttgtctcaaaga i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417209 0 + 80974532 C a score=24897.000000 s hg38.chr1_KI270759v1_alt 262818 9 + 425601 ggaaaaaga s panTro4.chr1 225018939 9 + 228333871 ggaaaaaga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226388748 9 - 229942017 agaaaaaga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140271800 9 - 143122389 agaaaaaga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16981007 9 - 229590362 agaaacagg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223744375 9 - 227556264 agaaacagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16794579 9 - 220367699 agaaacagg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82592998 9 + 85787240 agaaaCCGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14273440 9 - 49578535 agaaaaaga i calJac3.chr19 C 0 I 294 s canFam3.chr7 36417209 9 + 80974532 GGAAAAGGA i canFam3.chr7 C 0 I 5 e mm10.chr1 178838108 435 + 195471971 I a score=341918.000000 s hg38.chr1_KI270759v1_alt 262827 124 + 425601 --aaaTGGCTTGAAAGGCATGTGAGACATTACATAGTTTGAGGTATTTCCTTTGCTATATGCAAAGGCATAAAAATGAACAGGGAGCTAGC-----GGTTTATTGCTGGTCCGAACCAGCAACATCACAGC- s panTro4.chr1 225018948 124 + 228333871 --aaaTGGCTTGAAAGGCATGTGAGACATTACATAGTTTGAGGTATTTCCTTTGCTATATGCAAAGGCATAAAAATGAACAGGGAGCTAGC-----GGTTTATTGCTGGTCCAAACCAGCAACGTCATAGC- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226388757 129 - 229942017 --aaaCGGCTTGAAAGGCGTGTGAGACATTACATAGTTTGAGGCATTTCCTTTGCTATATGCAAAGGCATAAAAACGAACAGGGAGCTAGCGGGAGGGTTTATTGCTGGTCCAAACCAGCAACATCACAGC- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140271809 128 - 143122389 --aaaTGGCTTG-AAGGTATGTGAGACATTCCACAATTTGAGGCATTCCCTTTGCTATATGCAAAGGCATAAACACGAACAGGGAGCTAGCGGGAGGGTTTACTGCTGCTCCAAAGCAGCAACATCACAGC- i nomLeu3.chr5 C 0 M 100 s rheMac3.chr1 16981016 128 - 229590362 --aaaCGGCTTGAAAGGCAGGTGAGACCTTACATAGTTTG-GGCATTTCCTTTGCTATATACAAAGTCATAAAAACGAACAGGGAGCCAGCGGGAGGGCTTATTCCTGGTCCAAACCAGCAACGTCACCGC- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223744384 128 - 227556264 --aaaCGGCTTGAAAGGCAGGTGAGACCTTACATAGTTTG-GGCATTTCCTTTGCTATATACAAAGTCATAAAAACGAACAGGGAGCCAGCGGGAGGGCTTATTCCTGGTCCAAACCAGCAACGTCACCGC- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16794588 128 - 220367699 --aaacgGCTTGAAAGGCAGATGAGACCTTACATAGTTTG-GGCATTTCCTTTGCTATATACAAAGTCATAAAAACGAATAGGGAGCCAGTGGGAGGGCTTATTCCTGGTCCAAACCAGCAACGTCACCGC- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82593007 127 + 85787240 --AAACGGCTTGAAAGGCAGGTGAGACATTACATAGTTTG-GGCATTTCCTTTGCTGTATACAAA-TCATAAAAACGAACAGGGAGCCAGCGGGAGGGTTTATTCCCGGTCCAAACCAGCAATGTCACCGC- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14273743 124 - 49578535 --AACAGGCTTGAAAGCCATGTTAGACATGACATAGATTGAGGTA-----TGTGCCATATGCAAAGGCATAAAAATGAACCGGGAGCTAGTGGGGTTCTTTATTGCTGGTCCAAACCAGGCACGGCACAGC- i calJac3.chr19 I 294 C 0 s canFam3.chr7 36417223 113 + 80974532 AAAACCTACT--AAAGATGTGTGAAACATCACATAGTTGGAGGCACTTCCCA-GCTGTATGCAAAGGCATGGAGAGGAACGGGGAGC----------------TGTTGGTCTAGTCCAGCAACATCATACTC i canFam3.chr7 I 5 C 0 e mm10.chr1 178838108 435 + 195471971 I a score=625574.000000 s hg38.chr1_KI270759v1_alt 262951 263 + 425601 TGGCCCTGGGCGTCACAGGGTCTCATGGGGGTACCTTAAGAGGATTCTTAAATGAAACTCAgaacacagagaagtagttgattttgtg---tcttgcat--gttctgactcttcatttagtgtcacagcaagggtcaAGGATATGGGAAATCATAAACAATCCCAAGAGTTTCATGATCTTTGAGAATCTTAAAGC--TTCATCTAAGCTATGCTTTTGAATTGGGCAGAACCAGAATGGAT---ACAAGATGAATACAGTTCAAATGATTCT s panTro4.chr1 225019072 263 + 228333871 TGACCCTGGGCGTCACAGGGTCTCATGGGGGTACCTTAAGAGGATTCTTAAATGAAACTCAGAACACAGAGAAGTAGTTGATTTTGTG---TCTTGCAT--GTTCTGACTCTTCATTTAGTGTCACAGCAAGGGTCAAGGATATGGGAAATCATAAACAATCCCAAGAGTTTCATGATCTTTGAGAATCTTAAAGC--TTCATCTAAGCTGTGCTTTTGAATTGGGCAGAACCAGAATGGAT---ACAAGATGAATACAGTTCAAATGATTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226388886 263 - 229942017 TGGCCCTGGGTATCACAGGGTCTCAGGGGGGTACCTTAAGAGGATTCTTAAATGAAACTCAGAACATGGAGAAGTAGTTTATTTTGTG---TCTTGCAT--GTTCTGACTCTTCATTTAATGTCACAGCAAGGGTCAAAGATATGGGAAATCATAAACAATCCCAAGAGTTTCATAATCTTTGAGAATCTTAAAGC--TTCATCTAAGCTATGCTTTTGAATTGGGCAGAACCAGAACGGAT---ACAAGATGAATACAGTTCGAATGATTCT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16981144 260 - 229590362 TGGTCCTGGGAGCCACAGGGTCTCACGGGGGTACCTTAAGAGAATTCTCAAAAGAAACGGAGAACACAG---AGTAGTTTATTTTGTG---TCTTGCGT--GTTCTGACTCTTCATTTAGTGTCACAGCAAGGGTCAAGGATTTGGGAAATAATAAACAATCCCAGGAGTTTCATGATCTTTGAGAATCTTAAAGG--TTCATCTAAGCTGTGCTTTTGAATTGGGCAGAACCAGAACAGAT---ACGAGATCAATACAGTTCAAATGATTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223744512 260 - 227556264 TGGTCCTGGGAGCCACAGGGTCTCACGGGGGTACCTTAAGAGAATTCTCAAAAGAAACGGAGAACACAG---AGTAGTTTATTTTGTG---TCTTGCGT--GTTCTGACTCTTCATTTAGTGTCACAGCAAGGGTCAAGGATTTGGGAAATAATAAACAATCCCAGGAGTTTCATCATCTTTGAGAATCTTAAAGG--TTCATCTAAGCTGTGCTTTTGAATTGGGCAGAACCAGAACAGAT---ACGAGATCAATACAGTTCAAATGATTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16794716 263 - 220367699 TGGTCCTGGGAGCCACAGGGTCTCACGGGGGTTCCTTAAGAGAATTCTCAAAAGAAACGGAGAACATGG---AGTAGTTTATTTTGTG---TCTTGCGT--GTTCTGACTCTTCATTTAGTGTCACAGCAAGGGTCAAGGATTTGGGAAATAATAAACAATCTCAGGAGTTTCATCATCTTTGAGAATCTTAAAGG--TTCATCTAAGCTGTGCTTTTGAATTGGGCAGAACCAGAACAGATACGACGAGATCAATACAGTTCAAATGATTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82593134 245 + 85787240 TGGTCCTGGGAGCCACAGGGTCTCACGGGGGTTCCTT-------------AAAGAAAC--AGAACACGG---AGTAGTTTATTTTGTG---TCTTGCGT--GTTCTGATTCTTCATTTAGTGTCACAGCAAGGGTCAAGGATTTGGGAAATGATAAAAAATCCCAGGAGTTTCATCATCTTTGAGAATCTTAAAGC--TTCATCTAAGCTGTGCTTTTGAATTGGGCAGAACCAGAACAGAT---ACGAGATCAATACAGTTCAAATGATTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14273867 265 - 49578535 TGGTCCTGGGAGTCGCAGGGTCTCATGAGGGTACCTCATGGGCATTCTTAAAAGAAACTGACAACATGGAGGAGGAGTTTATTTTGTG---TCGTGCATGGGTTCTGATTCTTCCTTTAGCATTACAGCGAGGGTCCAGAGTATGGGAAGTAATAAGCAACCCCAACAGTTTCATCATCTTTGAGAATCTTAAAGC--TCCATCTAAGCTATGTGTTTGGATTAGGCAGAACCAGAGCAGAC---ACAAGATGAATACAGTTCAAGTGATTCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36417336 215 + 80974532 TGGTCCTTGGGGTCACAGGG----------------------AATTCT-----------------------------TTTATTTTACATCTTCTTGCAT--GTTCTGATTCTTCGATGGGTGTCACAGCAGGGGCCATGGATATAGAGAATAATAAACAAT--CAAGAGTTTCACGATCTCTAAGAGTTTTAAAGCAAGCCATCCAAGCTGTGCTTCTGAGTTGGGTTGAACCAGAGCAAGT---ACCAGAGGAGCCCAGTATGAATGATTTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e nomLeu3.chr5 140271937 100 - 143122389 M a score=1337408.000000 s hg38.chr1_KI270759v1_alt 263214 425 + 425601 AAAACTAGAGATTAAATCCTGTGAATTTCCTACTCTCAGCAGGAGGAGATTACAACTATTTCCAGGTTTAAGAT----GATGAACAtgattggttttgccccgtgctcactgggctcagatgagaaatagctttaaggtgcatccagggtttggttggttgtgaagaagaatattccttgtcgtcaatgaataaatgttgtgataggtcattagaggaggatctagagccctttgctggaaattgtttgaaTTTGAA-----GCCAGAGAAGTAAGCAAGTAACCACTTTGTTCTCCTTCTTTCTCTTTGTTTA-----CTCCATTGTACATTGACTGTC-TCCCAAAGTATCCCACCGAGCCTTAAGAAAAAGTTCCCCTTAAAGATAACAGAACTGGAGGATT-CAGCTAGGGGCTTTTTGATTAGTCAAGAAGCCTTT s panTro4.chr1 225019335 425 + 228333871 AAAACTAGAGATTAAATCCTGTGAATTTCCTACTCTCAGCAGGAGGAGATTACAACTATTTCCAGGTTTAAGAT----GATGAACAtgattggttttgccccgtgctcactgggctcagatgagaaatagctttaaggtgcatccagggtttggttggttgtgaagaagaatattccttgtcatcaatgaataaatgttgtgataggtcattagaggaggatctagagccctttgctggaaattgtttgaaTTTGAA-----GCCAGAGAAGTAAGCAAGTAACCACTTTGTTCTCTTTCTTTCTCTTTGTTTA-----CTCCATTGTACATTGACTGTC-TCCCAAAGTATCCCACCGAGCCTTAAGAAAAAGTTCCCCTTAAAGATAACAGAACTGGAGGATT-CAGCTAGGGGCTTTTTGATTAGTCAAGAAGCCTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226389149 425 - 229942017 AAAACTTGAGATTAAATCCTGTGAATTTCCTACTCTCAGCAGGAGGAGATTACAACTATTTCCAGGTTTAAGAT----GATGAACATGATTGGTTTTGCCCCGTGCTCACTGGGCTCAGATGAGAAATAGCTTTAAGGTGCATCCAGGGTTTGGTTGGTTGTGAAGAAGAATATTCCTTGTCGTCAATGAATAAATGTTGTGATAGGTCATTAGAGGAGGATCTAGAGCCCTTTGCTGGAAATTGTTTGAATTTGAA-----GCCAGAGAAGTAAGCAAGTAACCACTTTGTTCTCTTTCTTTCTCTTTGTTTA-----CTCCATTGTACATTGACTGTC-TCCCAAAGTATCCCACTGAGCCTTAAGAAAAAGTTCCCCTTAAAGATAACAGAACTGGAGGATT-CAGCTAGGGGCTTTTTGATTAGTCAAGAAGCCTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140272039 420 - 143122389 AAAACTAGAGA-TAAATCCTGTGAATTTCCTACTCTCAGCAGGAGGAGATTAcaactatttccaggtttaatgt----gatgaacatgattggctttgccccgtgctcactgggctcagatgagaaatagctttaaggtgcatccagggttcggttggttgtgaagaagaatattccttgttgtcaatgaataaatgttgtgacaggtcattagaggaggatctagagccctttgctggaaaTTGTTGGAATTTGAA-----GCCAGAGAAGTAAGCAAGTAACCACTTTGTTCTCTTTCCTTC----TGTTTA-----CTCCATTGTGCATTGACTGTT-TCCCAAAGTATCCCACTGAGCCTTAAGAAAAAGTTCCCCTTAAAGATAACAGAACTGAAGGATT-CAGCTAGGGGCTTTTTGATTAGTCAAGAAGCCTTT i nomLeu3.chr5 M 100 C 0 s rheMac3.chr1 16981404 407 - 229590362 AAAACT--AGATCAAATCCTGTGAATCTCCTACTCTCAGCAGGAGGAGATTACAGCTGTTTCCAGGTTTAa-------gatgaacgtgactggttttgccccatgctccctgggctcagacgagaactagctttaagctgcaaccagggtttggctggttgtgaagaagaatattccttgtcgtcaatgagtaagtgttgtgatagatcattaaaggaggatctggagccctttgctggaaaTTGTTGGAATTTGAA-----ACCAGAG-------------ACCACTTTGTTCTCTTTCTTTCTCTTTGTTTA-----CTCCATTGTACATTGACTGTC-TCCCAAAGTATCCCACTGAGCCTTAAGAAAAAGTTTCCTTTAAAGGTAACAGAACTGAAGGATG-CAGCTAGCGGCTTTTCCATTAGTCAGGAAGCCTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223744772 407 - 227556264 AAAACT--AGATCAAATCCTGTGAATCTCCTACTCTCAGCAGGAGGAGATTACAGCTGTTTCCAGGTTTAA-------GATGAACGTGACTGGTTTTGCCCCATGCTCCCTGGGCTCAGACGAGAACTAGCTTTAAGCTGCAACCAGGGTTTGGCTGGTTGTGAAGAAGAATATTCCTTGTCGTCAATGAGTAAGTGTTGTGATAGATCATTAAAGGAGGATCTGGAGCCCTTTGCTGGAAATTGTTGGAATTTGAA-----ACCAGAG-------------ACCACTTTGTTCTCTTTCTTTCTCTTTGTTTA-----CTCCATTGTACATTGACTGTC-TCCCAAAGTATCCCACTGAGCCTTAAGAAAAAGTTTCCCTTAAAGGTAACAGAACTGAAGGATG-CAGCTAGCGGCTTTTCCATTAGTCAGGAAGCCTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16794979 420 - 220367699 AAAACT--AGATCAAATCCTGTGAATCTCCTACTCTCAGCAGGAGGAGATTACAGCTGTTTCCAGGTTTAA-------GATGAACGTGACTGGTTTTGCCCCATGCTCCCTGGGCTCAGACGAGAACTAGCTTTAAGCTGCATCCAGGGTTTGGCTGGTTGTGAAGAAGAATATTCCTTGTTGTCAATGAGTAAGTGTTGTGATAGGTCATTAAAGGAGGATCTGGAGCCCTTTGCTGGAAATTGTCGGAATTTGAA-----ACCAGAGAAGTAAGCAAGTAACcactttgttctctttctttctctttgttta-----ctCCATTGTACATTGACTGTC-TCCCACAGTATCCCACTGAGCCTTAAGAAAAAGTTTCCCTTAAAGGTAACAGAACTGAAGGATG-CAGCTAGCGGCTTTTCCATTAGTCAGGAAGCCTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82593379 420 + 85787240 AAAACT--AGATCAAATCCTGTGCATCTCCTACTCTCAGCAGGAGGAGATTACAACTGTTTCCAGGTTTAa-------gatgaacgtgattggttttgccccatgctcactgggctcagacgagaactagctttaagctgcgtccagggttaggctggttgtgaagaagaatattccttgtcgtcaatgagtaagtgctgtgataggtcattaaaggaggatctggagccctttgctggaaaTTGTTGGAATTTGAA-----ACCAGAGAAGTAAGCAAGTAACCACTTTGTTCTCTTTCTTTCTCTTTGTTTA-----GTCCATTGTACATTGACCGTC-TCCCAAAGTATCCCACTGAGCCTTAAGAAAAAGTTTTCCTTAAAGGTAACAGAACTGAAGGATG-CAGCTAGCAGCTTTTCCATTAGTCAGGAAGCCTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14274132 423 - 49578535 AAAACTGGAGATCCAATCCTGTGAATTTCCTACTGTCAGCAGGGGGAGATTACAACTATTTCCAGGTTTAAGATGATGAATGAACATGACTGGTTTTGCCCCATGCTCACTGGGCTCAGGTGAGAAATAGCTTTAAGGTACATCCAGAGTTTGGCTGGCTGT---GAAGAATATTCCTTGTGGTCAGTGAATAAGTGTTGCGACAGGTCATTAGAAAAGGATCTAGAGCATGTTGCTGGAAACCGTTTGAATTTGAA-----GCCAGAGAATTAAGCAAGTAGCCACTTCGTTCTCTTTCTTTCTCTTTGTTTA-----CTGCAT--TACATTGACTGTC-TCCCAAAGTATCCCACTGAGCTTTAAGGAAGAGTTCCCCTTAAA-ATAACAGAACTAAAGGATT-CAGCTAGGGGCTCTTTGATTCGTCAAGAAGGCTTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36417551 419 + 80974532 TAACCTGGAGATCTAGTTCGGTGGCTTTCCCACTCTTAGCAGAAGGAGCTTACGAGGATTGTCGGGTGTAAGAT----GATGGAGATGGTTGG-TTTGctccacgctcactgaactaagatgagaagtaggtttacgatgcatcaaga---cagttgggtgt---gaagattattcctcgtagtcactgagctaatactgtgataggcccccggggaaggtgcagagtctcatcgctggaaaTT----GAATTTGGATTTTCACTGGAGGATTAGGCAAATGACACTGAAGTTCTC-TTCTTTCTCTTTATGCAATGTTCTCTGCTGTGTATAGACTGTCTTCCCAGATCATCCCACTGGACCTTACAGAAAACCTCCCCTAGAG------AGAACTGAAGAATTCCAGCTAGGGCCTTCTAGAATAGTCAAGAGTTCTTt i canFam3.chr7 C 0 I 388 e mm10.chr1 178838108 435 + 195471971 I a score=830361.000000 s hg38.chr1_KI270759v1_alt 263639 283 + 425601 GATTGGATGGACAtgtaatcccagcactttgggaggctgagacgggaggattatttgagtttaggagttcaagacaagcctgggcaacatggcagaaacttgtctctacaaaaagtacaaaaaaattagccgggcatcgtgg-----caggcacctgtaatcccagctactcgggaggctgag------------------------------------------gc---agaattgcttgaacctgggaggcagaggttgcagtgagccaagatcctgtcactgcactccagcctgggcgacacagcgagactccatctcaaagaaacaaat s panTro4.chr1 225019760 286 + 228333871 GATTGGATGGACGtgtaatcccagcactttgggaggctgagacgggaggattatttgagtttaggagttcaagacaagcctgggcaacatggcagaaacttgtctctacaaaaagtacaaaaaaattagccgggcatcgtgg-----cgggcacctgtaatcccagctactcgggaggctgag------------------------------------------gcaggagaattgcttgaacctgggaggcagaggttgcagtgagccaagatcctgtcactgcactccagcctgggcgacacagcgagactccatctcaaagaaacaaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226389574 286 - 229942017 GATTGGATGGACGtgtaatcccagcactttgggaggctgagacgggaggattatttgagttcaggagttcaagacaagcctgggcaacatggcaaaaacttgtctctacgaaaagtacaaaaaaattagccaggcatggtgg-----cgggcacctgtaatcccagctactcaggaggctgag------------------------------------------gcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagatcgcaccactgcactccagcctgggcgacgcagtgagactctgtctcaaagaaacaaaT i ponAbe2.chr1 C 0 T 3802 s nomLeu3.chr5 140272459 286 - 143122389 CATTGGATGGACGtgtaatcccagcactttgggaggctgagacaggaggattatttgagttcaggagttcaagacaagcctgggcaacatggcaaaaacttgtctctacaacaagtacaaaaaaattagccaggcatggtgg-----cgggcacctgtaatcccagctactcgggaggctgag------------------------------------------gcaggagaattgcttgaacctgggaggcagaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacacagcgagactccgtctcaaggaaacaaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16981811 286 - 229590362 GATTGGATGGATGtgtaatcccagcactttgggaggctgagacgggaggattatttgagctcaggagttcaagacaagcctgggcaatgtggcaaaaatttgtctctacaaaaagtacaaaaaaattagtcaggcatggtgg-----cgggcacctgttatcccagctacttggtaggctgag------------------------------------------gcaggagaattgcttgaacctgggaggcagaggctgccgtgagccaagattgcgccactgcactccagcccgggcgacacagtgagactccgtctcaaagaaacaaat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223745179 328 - 227556264 GATTGGATGGATGtgtaatcccagcactttgggaggctgagacgggaggattatttgagctcaggagttcaagacaagcctgggcaatgtggcaaaaatttgtctctacaaaaagtacaaaaaaattagtcaggcatggtgg-----cgggcacctgtaatcccagctacttggtaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagcaggagaattgcttgaacctgggaggcagaggctgcagtgagccaagattgtgccactgcactccagcctgggcaacacagtgagactccgtctcaaagaaacaaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16795399 286 - 220367699 GATTGGATggacgtgtaatcccagcactttgggaggctgagacgggaggattatttgagctcaggagttcaagacaagcctgggcaatgtggcaaaaatttgtctctacaaaaagtacaaaaaaattagtcaggtatggtgg-----cgggcacctgtaatcccagctacttggtaggctgag------------------------------------------gcaggagaattgcttgaacctgggaggcagaggctgcagtgagccaagattgcgccactgcactccagcctgggcgacacagtgagactccatctcaaagaaacaaat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82593799 286 + 85787240 GATTGGATGGATGtgtaatcccagcactttgggaggctgagacgggaggattatttgagctcaggaggtcaagacaagcctgggcaatgtggcaaaaatttgtctctacaaaaagtacaaaaaaattagtcaggcgtggtgg-----cgggcacctgtaatcccagctacttggtaggctgag------------------------------------------gcaggagaattgcttgaacctgggaggcagaggctgcagtgagccaagattgcgccactgcactccagcctgggctacacagtgagactccgtctcaaagaaacaaat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14274555 287 - 49578535 GATTGGATGGACGtatgatcccagcactttgggagggcaaaacaggaggattgtttgcgctcaggagttcgagaccagcctgggcaacatggcaaaaacttgtctctacaaaaggcacaaaacaatgagctgggcctggtggattacatagcacctgtaatcccagctactcaggaggctgag------------------------------------------gcaggagaaacgcttgaactcgggaggcggtggttgcagtgagccg---tcatgccactgtactccagcctgggtgacagagcaagaccccatctcaaataacaaag- i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417970 388 + 80974532 I a score=539319.000000 s hg38.chr1_KI270759v1_alt 263922 263 + 425601 aaacaaacaaacaaaaaacaaaaattagctggatgtggtggtgcatgcctgtagttccagctactcgggaggctgaggtgggaagatcacttgagtccaggaggtggaggtttcagtgagccatgattgcaccactgcactacagcctgggtgacagagtgagaccctgtctcaaaca------------aaacaaacaaacaaaC-ACCTTGATTGATGATCCAATATAGTTCTTTTGTTGTTCTTTGGGCCttcttttttttttttttttAATG s panTro4.chr1 225020046 274 + 228333871 aaacaaacaaacaaaaaacaaaaattagctggatgtggtggtgcatgcctgtagttccagctactcgggaggctgaggtgggaagatcacttgagtccaggaggtggaggtttcagtgagccatgattgcaccactgcactacagcctgggtgacagagtgagaccctgtctcaaacaaaacaaacaaacaaacaaacaaacaaac-aCCTTGATTGATGATCCAATATAGTTCTTTTGTTGTTCTTTGGGCCTTC-tttttttttttttttaatt i panTro4.chr1 C 0 I 705 s nomLeu3.chr5 140272745 261 - 143122389 gaacaaacaaacaaaaaacaaaaattagccaggtgtggtggtgcatgcctgtagttccagctactggggaggctgaggtgggaagatcacttgagcccaggaggtggaggtttcagtgagccgtgattgcaccactgcactacagcctgggtgacagagtgagaccctgtctcaaaca--------aaacaaacaaacaaacaaCC-ACCTTGATTGATGATCCAATATAGTTCTTTTGTTGTTCTTTGGGCCTTT------TTTTTTTTTTAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16982097 262 - 229590362 aagcaaacaaataaaaaacaaaaattagctgggtgtggtggggcatgccggtaattccagctactcgggaggctgaggtgggaagatcacttgaggccagtaagcagagatttcagtgagccgtgattgcaccactgcactccagcctgggtgacagagtgagaccctgtctcaaag------------caaacaaacaaacaaaaaaCCTTGACTGATGACCAAGTATAGTTCTTTTGTTGTTCTTTGGGCC--TTTTTTTTTTTCTTTTTAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223745507 262 - 227556264 aaacaaacaaataaaaaacaaaaattagctgggtgtggtggtgcatgccggtaattccagctactcgggaggctgaggtgggaagatcacttgaggccagtaagcagagatttcagtgagccgtgattgcaccactgcactccagcctgggtgacagagtgagaccctgtctcaaag------------caaacaaacaaacaaaaaaCCTTGACTGATGACCAAGTATAGTTCTTTTGTTGTTCTTTGGGCC--TTTTTTTTTTTCTTTTTAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16795685 264 - 220367699 aaacaaacaaataaaaaacaaaaattagctgggtgtggtggtgcgtgcctgtaattccagctactcgggaggctgaggtgggaagatcacttgaggccagtaagcagagatttcagtgagccgtgattgcaccactgcactccagcctgggtgacagagtgagaccctgtctcaaag------------ccaacaaacaaacaaaaaaccttgactGATGACCAAGTATAGTTCTTTTGTTGTTctttgggcctttttttttttttctttttaatg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82594085 268 + 85787240 aaacaaacaaataaaaaacaaaaattagctgggtgtggtggtgcatgcctgtaattccagctactcgggaggctgaggtgggaagatcacttgagcccagtaagcagagatttcagtgagccgtgattgcaccactgcactccagcctgggtgacagagtgagaccctgtctcaaagc----aaacaaacaaacaaacaaacaaacaaCCTTGACTGATGACCAAGTATAGTTCTTTTGTTGTTCTTTGGGCC----TTTTTTTTTCTTTTTAATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14274842 240 - 49578535 aaacaaac-------aaccaaaaaTCagccaggtgtggtggtgcgtgcctgcagttccagctacttgggaggctgaggtgggaggatcacttgagccctggaggtggaggtttcagtgagccctgatggcaccactgcactccagcctgggtgac--agtgagactctgtttcaga--------------aaagaaggaaa------GCATTGATTGATGATCCAGTATAGTTCTTCTGTTGTTCTTTGGGCC-------GCCCCATTCTTTAATG i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417970 388 + 80974532 I e ponAbe2.chr1 226389860 3802 - 229942017 T a score=77521.000000 s hg38.chr1_KI270759v1_alt 264185 31 + 425601 ATCACTTATCTTTCCCTTGAGGGAAACCTAC s panTro4.chr1 225021025 31 + 228333871 ATCACTTATCTTTCCCTTGAGGGAAACCTAC i panTro4.chr1 I 705 C 0 s nomLeu3.chr5 140273006 31 - 143122389 ATCACTTATCTTTCCCTTGAGGGAAACCTAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16982359 31 - 229590362 ATCACTTATCTTTCCCTTGAGGAAAACCTAC i rheMac3.chr1 C 0 I 9 s macFas5.chr1 223745769 31 - 227556264 ATCACTTATCTTTCCCTTGAGGAAAACCTAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16795949 31 - 220367699 atcacttaTCTTTCCCTTGAGGAAAACCTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82594353 31 + 85787240 ATCACTTATCTTTCCCTTGAGGAAAACCTAC i chlSab2.chr25 C 0 I 9 s calJac3.chr19 14275082 31 - 49578535 ATCACTTATCTCTTCCTTGAGGAAAACCTAT i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417970 388 + 80974532 I e ponAbe2.chr1 226389860 3802 - 229942017 T a score=5977.000000 s hg38.chr1_KI270759v1_alt 264216 10 + 425601 GTTGTAAATA s panTro4.chr1 225021056 10 + 228333871 GTTGTAAATA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140273037 9 - 143122389 A-TGTAAATA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223745800 9 - 227556264 -ATGTTAATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16795980 9 - 220367699 -Atgttaata i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14275113 9 - 49578535 -ATGTAGATA i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417970 388 + 80974532 I e rheMac3.chr1 16982390 9 - 229590362 I e chlSab2.chr25 82594384 9 + 85787240 I e ponAbe2.chr1 226389860 3802 - 229942017 T a score=20020.000000 s hg38.chr1_KI270759v1_alt 264226 97 + 425601 GAGAAttttttttttttttttttttttttttgagacggagtcttgctctgtcgcccaggctggagtgcagtggcatgatctcagctcactgcaagct s panTro4.chr1 225021066 91 + 228333871 GAGAAtttttttttttttttttttt------gagacggagtcttgctctgtcgcccaggctggagtgcagtggcatgatctcagctcactgcaagct i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140273046 83 - 143122389 GAGAAAttttttttttt--------------gaggcggagtctcactctgttgcccaggctggagtgcagtggtgtggtctcggctcactgcaagct i nomLeu3.chr5 C 0 M 100 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417970 388 + 80974532 I e calJac3.chr19 14275122 0 - 49578535 C e rheMac3.chr1 16982390 9 - 229590362 I e chlSab2.chr25 82594384 9 + 85787240 I e papAnu2.chr1 16795989 0 - 220367699 C e macFas5.chr1 223745809 0 - 227556264 C e ponAbe2.chr1 226389860 3802 - 229942017 T a score=982.000000 s hg38.chr1_KI270759v1_alt 264323 10 + 425601 ccgcctcctg s panTro4.chr1 225021157 10 + 228333871 ccgcctcctg i panTro4.chr1 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417970 388 + 80974532 I e calJac3.chr19 14275122 0 - 49578535 C e rheMac3.chr1 16982390 9 - 229590362 I e chlSab2.chr25 82594384 9 + 85787240 I e papAnu2.chr1 16795989 0 - 220367699 C e macFas5.chr1 223745809 0 - 227556264 C e nomLeu3.chr5 140273129 100 - 143122389 M e ponAbe2.chr1 226389860 3802 - 229942017 T a score=7402.000000 s hg38.chr1_KI270759v1_alt 264333 27 + 425601 ggttcacgccattctcctgcctcagcc s panTro4.chr1 225021167 27 + 228333871 ggttcacgccattctcctgcctcagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226386058 27 - 229942017 ggttcacgccattctccagcctcagcc i ponAbe2.chr1 T 3802 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417970 388 + 80974532 I e calJac3.chr19 14275122 0 - 49578535 C e rheMac3.chr1 16982390 9 - 229590362 I e chlSab2.chr25 82594384 9 + 85787240 I e papAnu2.chr1 16795989 0 - 220367699 C e macFas5.chr1 223745809 0 - 227556264 C e nomLeu3.chr5 140273129 100 - 143122389 M a score=92178.000000 s hg38.chr1_KI270759v1_alt 264360 180 + 425601 tccggagtagctgggactacaggcgcccgccaccacacccggctaatttttttgtatttttagtagagacggggtttcatcgtgttagccaggatggtcttgatctcctgacctcgtgatccacccgtcttggcctcccaaagtgctgggattacaggcgtgagccaccatgcctggccT s panTro4.chr1 225021194 180 + 228333871 tccggagtagctgggactacaggcgcccgccaccacacccggctaatttttttgtatttttagtagagacggggtttcatcgtgttagccaggatggtcttgatctcctgacctcgtgatccacccgtcttggcctcccaaagtgctgggattacaggcgtgagccaccatgcctggccT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226386085 180 - 229942017 tccggagtagctgggactacaggcgcccgccaccacgcccggcgaatttttttttatttttagtagagacggggtttcactgtgttagccaggatggtcttgatctcccgacctcatgttccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccactggccccggccT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140273229 180 - 143122389 tcccaagtagctgggactacaggcgcctgccaccacgcccggctaatttttttgtatttttagtagagacggggtttcactgtgttagccaggatggtcttgatctcccgacctcatgttccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccactggccccagccT i nomLeu3.chr5 M 100 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417970 388 + 80974532 I e calJac3.chr19 14275122 0 - 49578535 C e rheMac3.chr1 16982390 9 - 229590362 I e chlSab2.chr25 82594384 9 + 85787240 I e papAnu2.chr1 16795989 0 - 220367699 C e macFas5.chr1 223745809 0 - 227556264 C a score=197138.000000 s hg38.chr1_KI270759v1_alt 264540 74 + 425601 GAGAAAAATATTTTTGATTTCCACTTTATAGATGAGAGAATTGAAATTCAGGTTAATGATGCCActcaggcttg s panTro4.chr1 225021374 74 + 228333871 gagaaaaatatttttgatttccactttatagatgagagaactgaaattcaggttaatgatgccActcaggcttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226386265 73 - 229942017 GAGAAAAATATTTTTGATTTCCACTTTATAGATGAGAGAATTCAAATTCAGG-TAATGATGCCActcaggcttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140273409 73 - 143122389 GAGAAAAATATTTTTAATTTCCACTTCATAGATGAGAGAATTCAAATTCAGG-TAATGATACCActcaggcttg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16982399 72 - 229590362 GAGAAAAATATTTTTAATTTCCACTTTATAGATGAGAGAATTCAAATTCAGG-TAATGATGCCActcagg-tgg i rheMac3.chr1 I 9 C 0 s macFas5.chr1 223745809 72 - 227556264 GAGAAAAATATTTTTAATTTCCACTTTATAGATGAGAGAATTCAAATTCAGG-TAATGATGCCActcagg-tgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16795989 72 - 220367699 gagaaaaatatttttaatttccactttatagatgagagaaTTCAAATTCAGG-TAATGATGCCACTCAGG-TGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82594393 72 + 85787240 GAGAAAAATATTTTTAATTTCCACTTTATAGATGAGAGAATTCAAATTCAGG-TAATGATGCCActcagg-cag i chlSab2.chr25 I 9 C 0 s calJac3.chr19 14275122 72 - 49578535 GAGAAAAAGAGTTTTAATTTCCACTGTATAGATGAGAGAGCTC-GGTGCGGG-TGATGACGCCActcaggtctg i calJac3.chr19 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I e canFam3.chr7 36417970 388 + 80974532 I a score=2012492.000000 s hg38.chr1_KI270759v1_alt 264614 666 + 425601 aaacttcagcatcatttttgtgtttcttctgcacatcccacattcggtccatcaccaaattctgttaattttttcctcgtgatgttactggcatctgtctttttctcatcacatccactgataccaactggggcttt-------------ctggatgattatactggatttttccattaccttccacatgctggtctt---acctccttGATGCCTCCCGTAAGTATTTTGGATCTTGGGAATATGAATTCATGTCTGTTCCCTTCGTTTGGCACC-CCCATGGGTTGTGGGCACAGAGGCAGGGAGGCTCTGAGAGGCATGGGCCAGGAAAGGCTTTTCAGAGATTTCTGAGCATACCTGTGTCCCTTACACCTTATTCTAATTCACACCAGCTCTTGGTGTTTGCTCTTCGACTGTGGACCTCTGTGGATGGTAGAC---AATTTGTGTGAGTCCACGAGCC--CTTCAGTGTTAAACA-TCATTAAACATAAGGTCGCAAAAGTCAGCTGATGCTCAAACTGAAAttgttgtattttgttttgttttatgttattttgtttCCCAGAATGAGGATATATTGGTCTT-ATTGTGCTATGTGT--TAGAGCCACATATTCTTTCTTCTGATTCTGTGTTCACATTGCCTTCCAGATATCATCAAA-------------------------------------TCTAACATGTTAAAATCTAACATAAT s panTro4.chr1 225021448 660 + 228333871 aaacttcagcatcatttttgtgtttcttctgcacatcccacattcggtccatcatcaaattctgttaattttttcctcgtgatgttactggcatctgtctttttctcatcacatccactgataccaactggggcttt-------------ctggatgattatactggatttttccattaccttccacatgctggtctt---acctccttGATGCCTCCCGTAAGTATTTTGGATCTTGGGAATATGAATTCATGTCTGTTCCCTTCGTTTGGCACC-CCCATGGGTTGTGGGCACAGAGGCAGGGAGGCTCTGAGAGGCATAGGCCAGGAAAGGCTTT-CAGGGATTTCTGAGCATACCTGTGTCCCTTACACCTTATTCTAATTCACACCAGCTCTTGGTGTTTGCTCTTGGACTGTGGACCTCTGTGGATGGTAGAC---AATTTGTGTGAGTCCACGAGCC--CTTCAGTGTTAAACA-TCATTAAACATAAGGTCACAAAAGTCAGCTGATGCTCAAACTGAAATTGTTGTATTTTGTTTT-----ATGTTATTTTGTTTCCCAGAGTGAGGATATATTGGTCTT-ATTGTGCTATGTGT--TAGAGCCACATATTCTTTCTTCTGATTCTGTGTTCACATTGCCTTCCAGATATCGTCAAA-------------------------------------TCTAACATGTTAAAATCTAACATAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226386338 670 - 229942017 aaacttcagcatcatttttgtgtttcttctgcacatcccacatttggtccatcaccaaattctgttaattttttcctggtgatgttactggcatctgtctttttctcaccacatccactgataccaACTGGGGCTTT-------------CTGGATGATTATGCTGGATTTTTCCATTACCTTCCACATGCTGATCTT---ACCTCCTTGATGCCTCCCCTAAGTGTTTTGGATCTTGGGAATATGAATTCATGTCTGTTCCCTTCGTTTGGCACC-CCCATGGGCTGTGGGCACAGAGGCGGGGAGGCTTTGAGAGGCATGGGCCAGAAAAGGCTTTTCAGAGATTTCTGAGCATACCTGTGTCCCCTATGCCTTATTCTAACTCACACCAGCTCTTGGTGTTTGCTCTTGGACTGTGGACCTCTGTGGATGGTAGAC---AATTTCTGTGAGTCCAGGAGCC--CTTCGGTGTTAAACA-TCATTAAACATAAGGTCATGAAAGTCAGCTGATGCTCAAACTGAAAttgttgtattttgttttgttttaggttattttgtttCCCAGAATGAGGATATATTGGTCTT-ATTGTGCTATGTGT--TAGAGCCACGTATTCTTTCTTCTGATTCCATGTTCACATTGCCTTCCAGATATCATCAAATCTC---------------------------------TCTAACATGTTAAAATCTAACATCAT i ponAbe2.chr1 C 0 I 4009 s nomLeu3.chr5 140273482 666 - 143122389 aaacttcagcatcatttttgtgtttcttctgcacatcccacatttggtccatcaccaaattctgtcagttttttccttgtgatgttactggcatctgtctttttctcaccacatccactgataccaactggggcttt-------------ctggatgattatactggatttttccattaccttccacatgctggtctt---acctccttGATGCCTCCCCTAAGTGTTTTGGATCTTGAGAATATGAATTCATGTCTGTTCCCTTCGTTTGGCAGC-CCCACGAGTTGTGGGCACAGAGGCGGGGAGGCTCTGAGAGGCATGGGCCAGGAAAGGCCTTTCAGAGATTGCTGAGCATACTTGTGTCCCTTACACCTTATTTGAACTCATACTAGCTCTTGGTGTTTGCTCTTGGACTGTGGACCTCTGTGGATGGTAGAC---AATTTGTGTGAGTCCACGAGCC--CTTCAGTATTAAACA-TCATTAAACATAAGGTCACAAAAGTCAGCTGATGCTCAAACTGAAAttgttgtattttgttttgttttaggttattttgtttCCCAGAATGAGGATATATTGTTCTT-ACTGTGCTATGTGT--TCGAGCCACGTATTCTTTCTTCTGATTCCGTGTTCACATTGCCTTCCAGATATCATCAAA-------------------------------------TCTAGCATGTTAAAATCTAACATAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16982471 652 - 229590362 aaacttcaacatcatttttgtgtttcttctgcacatcccacactcagtccatcaccaaattctgttaattttgtcctcgtgatgttactggcatctgtatttttctcaccacatccactgataccaactggggcttt-------------ctggactattatgctggatttttccattaccttccacatgctggtctt---gcctccttgacgcctgcccTAAGTGTTTTGGATCTTGGGAATATGAATTCATGTCTGTGCCCTTCGTTTGGCATC-CCCGCGGGTTGTGGGCACAGAGGTGGAGAGGCTCTGAGAGGCATGGGCCAGGAAAGGCTTTTCAGAGATTTCTGAGCATACCTGTGTCCCCTACACCTTATTCTAACTCACACCAGCTCTTGATGTTTGCTCTTGG-----GGACCTCTGTGGATGGTAGAC---AATTTGTGTGAGTCCACCAGCC---------------CA-TCATTAAATGTAAGGTCACAAAAGTCAGCTGCTGCTCACACTGAAAttgttgtatttggttttgttttatgttattttgtttCCCAGAATGAGGATATATTGGTCTT-ATTGTGCTATGTGT--TAGAGCCACATATTCTTTCTTCTGATTCCATGTTCACATTGCCTTCCAGATGTCATCAAATCTC---------------------------------TCTAACATGTTAAAATCTAACATAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223745881 652 - 227556264 aaacttcaacatcatttttgtgtttcttctgcacatcccacactcagtccatcaccaaattctgttaattttgtcctcgtgatgttactggcatctgtatttttctcaccacatccactgataccaactggggcttt-------------ctggactattatgctggatttttccattaccttccacatgctggtctt---gcctccttgacgcctgcccTAAGTGTTTTGGATCTTGGGAATATGAATTCATGTCTGTGCCCTTCGTTTGGCATC-CCCGTGGGTTGTGGGCACAGAGGTGGAGAGGCTCTGAGAGGCATGGGCCAGGAAAGGCTTTTCAGAGATTTCTGAGCATACCTGTGTCCCCTACACCTTATTCTAACTCACACCAGCTCTTGATGTTTGCTCTTGG-----GGACCTCTGTGGATGGTAGAC---AATTTGTGTGAGTCCACCAGCC---------------CA-TCATTAAATGTAAGGTCACAAAAGTCAGCTGCTGCTCACACTGAAAttgttgtatttggttttgttttatgttattttgtttCCCAGAATGAGGATATATTGGTCTT-ATTGTGCTATGTGT--TAGAGCCACATATTCTTTCTTCTGATTCTGTGTTCACATTGCCTTCCAGATGTCATCAAATCTC---------------------------------TCTAACATGTTAAAATCTAACATAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16796061 648 - 220367699 AAACTTCAACatcatttttgtgtttcttctgcACATCCCACACTCAGTCCATCACCAAATTCTGTTAATTTTGTCCTTGTGATGTTACTGGCATCTGTGTTTTTCTCACCACATCCACTAATACCAACTGGGGCTTT-------------CTGGACTATTATGCTGGATTTTTCCATTACCTTCCACATGCTGGTCTT---GCCTCCTTGACGCCTGCCCTAAGTGTTTTGGATCTTGGGAATATGAATTCATGTCTGTGCCCTTCGTTTGGCATC-CCCGTGGGTTGTGGGCACAGAGGTGGAGAGGCTCTGAGAGGCATGGGCCAGGAAAGGCTTTTCAGAGATTTCTGAGCATACCTGTGTCCCCTACACCTTATTCTAACTCACACCAGCTCTTGATGTTTGCTCTTGG-----GGACCTCTGTGGATGGTAGAC---AATTTGTGTGAGTCCACCAGCC---------------CA-TCATTAAATGTAAGGTCACAAAAGTCAGCTGCTGCTCACACTGAAATTgttgtatttggttttgttttatgttattttgtttccCAGAATGAGGATATATTGGTCTT-ATTGTGCTATGTGT--TAGAGCcacatattctttcttctgattCCGTGTTCACATTGCCTTCCAGATGTCATCAAA-------------------------------------TCTAACATGTTAAAATCTAACATAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82594465 652 + 85787240 aaacttcaacatcatttttgtgtttcttctgcacatcccacactcagtccatcaccaaattctgttaattttgtcctcgtgatgttactggcatctgtgtttttctcaccacatccattgataccaactggggcttt-------------ctggactattatgctggatttttccattaccttccacatgctggtctt---gcctccttgacacctgcccTAAGTGTTTTGGATCTTGGGAATATGAATTCATGTCTGTGCCCTTCGTTTGGCATC-CCCATGGGTTGTGGGCACAGAGGTGGAGAGGCTCTGAGAGGCATGGGCCAGGAAAGGCTTTTCAGAGATTTCTGAGCATACCTGTGTCCCCTACACCTTATTCTAACTCACACCAGCTCTTGATGTTTGCTCTTGG-----GGACCTCTCTGGATAGTAGAC---AATTTGTGTGAGTCCACCAGCC---------------CA-TCATTAAATGTAAGGTCACGAAAGTCAGCTGCTGCTCACACTGAAAttgttgtattttgttttgttttatgttattttgtttCCCAGAATGAGGATATATTGGTCTT-ATTGTGCTATGTGT--TAGAGCCACATATTCTTTCTTCTGATTCCGTGTTCACATTGCCTTCCAGATGTCATCAAATCTC---------------------------------TCTAACATGTTAAAATCTAACATAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14275194 660 - 49578535 acgcttcagcatcgtttttgcgtttcttctccgcatcccacattcaatccatcagcaaattctgttaattttttcctcatgctgttacgggtgtctgtctttttccaaccatgt-cactgataccagccgggccttt-------------ccggactattacactggatctttccattaccctccacgtgccggtctt---gcctcctcagtgcctccc--AAGTGTCCTGGATCTTGGGAATAGGGATTCATGGCTGCTCCCACCGTTTGGAACC-CCCGTGGGTTGTGGGCAGAGAGGTTGGGAGGCTCTGAGAGGCATGGGCCAGGAAAGGCTTTCCGGAGACTTCTAAGCATACCTTTGTCCCCTCCGCCTTATTCTAAGTCACACCAGCGCGCGGTGTTTGCTCTTGGGCTG-TGACCTCTGTGAATGGTGGAT---CATTTGTTTGAGT-CAGGAGCC--TCTCAGTGTTACACA-TCGTTGCAGGTAAGGTCACAAGAGTCAGCTGATGCTGAAACTGAAATTGTTATGTTTCGTTTG-----ATGTTACTTTGTTTCCCAGAATGAGGACGCAGTGGTCTTCATGGTGCTGTGTGT--TATGGCCTC-CATTCCTGCTTCGGATTCTGTGCTCAGGTTGCTTTCCAGATGCCACCGAATCTT---------------------------------TCTAATGTTTTAAAATCTATAATAAT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36418358 635 + 80974532 aaaCTTCAGCATCatttttgtatttctactgctcatcccattttcaatccatcaccaaatgctgttaactttatcc--atgaggttacctacatctgtttgtttctatccacttccagtgtcacccgctggagctttcctcatcttgtaccttgactattacattgttttcatacatggccttccagatgccagtcttttgtcatcctTGATATCTCCC-TGAGC-TTCAGGATTTGGGGAATATGAATCCTCATCTCCTCCATTCATTGGCCAACTCCCATGGGTC---AGCACAGAGCCAAGAAGACAC-------CATG------------------------------------------------------ATTTTAAGTCACAAAAGCTCTCAATATTTGCTTTTGAACTCTGGTCCTGTGTTTAGGGAAGGCCTACAGTTGGATGAATCTGTATTTCTCTCTCAGTGGTATATAGTCACTAAATGTCAGCTCACAAAAGTCAGTGAAAGC-CACACTGAGATTCTTTTGTTTTGTCTTCTCT------------------------AGAATTTACTGGTCTG-GTTGCAAAGTGGGTACTGGGGCAATATATCCATATTTGTAATACCGTGTTCGTGTTACTTTCCAGATGTCATCAAATCTTACCACCAGCAATTTTGAGGTTCTCTTTGTTAGAGCTAAAATTTAAAAATCTGTCATAAT i canFam3.chr7 I 388 C 0 e mm10.chr1 178838108 435 + 195471971 I a score=119759.000000 s hg38.chr1_KI270759v1_alt 265280 44 + 425601 GAGTGAAAATATATCAGCGAGAATGATAATAGTATCTGCTTTCT s panTro4.chr1 225022108 44 + 228333871 GAGTGAAAATATATCAGCAAGAATGATAATAGCATCTGCTTTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226391017 44 - 229942017 GAGTGAAAATATATCATCGACACTGATAACCTCACCTGCTTTCT i ponAbe2.chr1 I 4009 C 0 s nomLeu3.chr5 140274148 44 - 143122389 GAGTGAAAATATACTAGTGAGAATGATAATAGCACCTGCTTTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16983123 41 - 229590362 GAGTGAAAATATATCAGCAAGA---ATAATAGCACCTGCTTTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223746533 41 - 227556264 GAGTGAAAATATATCAGCAAGA---ATAATAGCACCTGCTTTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16796709 41 - 220367699 GAGTGAAAATATATCAGCAAGA---ATAATAGCACCTGCTTTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82595117 41 + 85787240 GAGTGAAAATATATCAGCAAGA---ATAATAGCACCTGCTCTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14275854 44 - 49578535 GAGTTAAAATCCATCAGCTACAATGATAATACCACCTGGtttct i calJac3.chr19 C 0 I 379 s canFam3.chr7 36418993 44 + 80974532 AAACTAAAATATATCAGTTGGAATGATAATATTGCCTGCTTTAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I a score=146365.000000 s hg38.chr1_KI270759v1_alt 265324 55 + 425601 AATCCATGTGTTCATCATGGGAAATAACAAAGCTGCATCATATCCTGTCTTGTTT s panTro4.chr1 225022152 55 + 228333871 AATCCACGTGTTCATCATGTGAAATAACAAAGCTGCATCATATCCTGTCTTGTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226391061 55 - 229942017 AATCCACGTGTTCTTCATGTGAAATAACAAAGCTGCATCATATCCTGTCTTGTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140274192 55 - 143122389 AGTCCACGTGTTCATCATGTGAAATAACAAAGCTGCGTCATATCCTGTCTTGTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16983164 55 - 229590362 AATCCACATGTTCATCATGTGAAATAACAAAGCTGCATCGTAACCTGTCTTGTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223746574 55 - 227556264 AATCCACATGTTCATCATGTGAAATAACAAAGCTGCATCGTAACCTGTCTTGTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16796750 55 - 220367699 AATCCACATGTTCATCATGTGAAATAACAAAGCTGCGTCGTAACCTGTCTTGTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82595158 55 + 85787240 AATCCACGTGTTCATCATGTGAAATAACAAAGCTGCGTCGTAACCCATCTTGTTT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36419037 55 + 80974532 AACCCACAGTTTCATTGTATAAAGTAACAAAATTTCATTATGTCATCTTTAGttt i canFam3.chr7 C 0 I 206 e mm10.chr1 178838108 435 + 195471971 I e calJac3.chr19 14275898 379 - 49578535 I a score=567104.000000 s hg38.chr1_KI270759v1_alt 265379 207 + 425601 CTATCATGT---------------CCTCTTCTCCAGTTAGATCCTAAGTCCCTCCATGACAAAGACCTGGATTCGTTCACACatttagtgattca-gcaaaacacctagtaagtaccccttgtgtggaaagccctgtactt-gcctttggTCCTATGGGAGTTGCGTTGCTTGATGTTAGTGATGTACCTAAGG---------GTGGTGTTAGGACTGACCGGGGCTCCCCTC- s panTro4.chr1 225022207 207 + 228333871 CTATCATGT---------------CCTCTTCTCCAGTTAGATCCTAAGTCCCCCCATGACAAAGACCTGGATTCGTTCACACatttagtgattca-gcaaaacacctagtaagtaccccttgtgtggaaagccctgtactt-gcctttggTCCTATGGGAGTTGCGTTGCTTGATGTTAGTGATGTACCTAAGG---------GTGGTGTTAGGACTGACTGGGGCTCCCCTC- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226391116 207 - 229942017 CTATCATGT---------------TCTCTTCTCCAGTTAGATCCTAAGTCCCTCCATGACAAAGACCTGGATTCGTTCACATatttagtgaatca-gcaatacacctagtaagtaccccttgcgtggaaagccctgtactT-TCCTTTGGTCCTATGGGAGTTGCGTTGCTTGATGTTAGTGATGTACCTAAGG---------GTGGTGTTAGGACTGACTAGGGCTCCCCTC- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140274247 207 - 143122389 CTATCATGT---------------CCTCTTCTCCAGTTAGATCCTAAGTCCCTCCATGACAAAGACCTGGATTCGTTCACATatttagtgattca-gcaaaacacctagtaagtaccccttgcgtggaaagccctgtactT-ACCTTCGGTCCTATGGGAGTTGCGCTGCTTGATGTTAGTGATGTACCTAAGG---------ATGGTGTTAGGAATGACCAGGGCTTCCCTC- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16983219 207 - 229590362 TCATCATGT---------------CCTCTTCTCCAGTTAGATCCTAAGTCCCTCCATGACAAAGACCTGGATTCGTTCACATatttagtgattca-gcaaaacacgtagtaagtaccccttgtgtggaaagccctgtactt-gcctttggTCCTATGGGAGTTGTGTTTCTTCATGTTAGTGATGTACCTGAGG---------GTGGTGTTAGGACTGACCAGGGCTCCCCTC- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223746629 207 - 227556264 TCATCATGT---------------CCTCTTCTCCAGTTAGATCCTAAGTCCCTCCATGACAAAGACCTGGATTCGTTCACATatttagtgattca-gcaaaacacgtagtaagtaccccttgtgtggaaagccctgtactt-gcctttggTCCTATGGGAGTTGTGTTTCTTCATGTTAGTGATGTACCTGAGG---------GTGGTGTTAGGACTGACCAGGGCTCCCCTC- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16796805 207 - 220367699 TCATCATGT---------------CCTCTTCTCCAGTTAGATCCTAAGTCCCTCCATGACAAAGACCTGGATTCGTTCATATATTTAGTGATTCA-GCAAAACACGTAGTAAGTACCCCTTGTGTGGAAAGCCCTGTACTT-GCCTTTGGTCCTATGCGAGTTGTGTTTCTTCATGTTAGTGATGTACCTAAGG---------GTGGTGTTAGGACTGACCGGGGCTCCCCTC- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82595213 207 + 85787240 TCATCATGT---------------CCTCTTCTCCAGTTAGATCCTAAGTCCCTCCATGACAAAGACCTGGATTCGTTCACATatttagtgattca-gcaaaacacgtagtaagtaccccttgtgtggaaagccctgtactt-gcctttggTCCTATGGGAGTTGTGTTTCTTCATGTTAGTGATGTACCTAAGG---------GTGCTGTTAGGACTGACCGGGGCTCCCCTC- i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36419298 234 + 80974532 ccATCATCTTTAGCTTCTACACACTCTCTTCCCCAGTAAGACTGTAAGGCCCTCAGTGACAAAGAACTATTTTTGCTCACGTCTTCAGTTACTTATGTAAGACATGGAATAAGTACCCATCCTGTAGGAGGCTCTGTACTTAACCCCTTGTCCTATAGGAGTTATGTTGCTTAGCATCAGTGGTGTACCAGGGGTGGGAAATATTGGTGCTGGGAATGTATGGGGCTTCTGCCC i canFam3.chr7 I 206 C 0 e mm10.chr1 178838108 435 + 195471971 I e calJac3.chr19 14275898 379 - 49578535 I a score=16493.000000 s hg38.chr1_KI270759v1_alt 265586 5 + 425601 CCAAG s panTro4.chr1 225022414 5 + 228333871 CCAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226391323 5 - 229942017 CCAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140274454 5 - 143122389 CCAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16983426 5 - 229590362 CCAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223746836 5 - 227556264 CCAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16797012 5 - 220367699 CCAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82595420 5 + 85787240 CCAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14276277 5 - 49578535 cccag i calJac3.chr19 I 379 C 0 s canFam3.chr7 36419532 5 + 80974532 CCCAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178838108 435 + 195471971 I a score=1030187.000000 s hg38.chr1_KI270759v1_alt 265591 313 + 425601 CCCCACCTATGTTTTTAATCACAATACCATGCA--ACTTCCAAATCAACGCTGTTGATAGA-AAGACACCTACCCAGCTCTGAAGAGTTATTTGGTCCCTAGATCAAGGGGCAGATAAGTCAGATTTCCAGAAAGATAGAGCCTGCCTCTTTGTCATTCCATCTCCACTATTCCTTCACTGATGAGAAAGTGATCAGATCAGAACTGATGTTGTATAAACTGCTCTGTAATTCCTGCCTGATTGGCTTTTCTTGAGAGGTGCCTGTCCATTAGCTTTTGCCTTCCTTTTGTCAGGCTCTCTAAACACTTTAAGTAA s panTro4.chr1 225022419 308 + 228333871 CCCCACCTATGTTTTTAATCACAATACCATGCA--ACTTCCAAATCAACGCTGTTGATAGA-AAGACACCTACCCAGCTCTGAAGAGTTATTTGGTCCCTAGATCAAGGGGCAGATAAGTCAGATTTCCAGAAAGATAGAGCCTGCCTCTTTGTCATTCCATCTCCACTATTCCTTCACTGATGAGAAAGTGATCAGA-----ACTGATGTTGTATAAACTGCTCTGTAATTCCTGCCTGATTGGCTTTTCTTGAGAGGTGCCTGTCCGTTAGCTTTTGCCTTCCTTTTGTCAGGCTCTCTAAACACTTTAAGTAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226391328 308 - 229942017 CCCCACCTATGTTTTTAACCACAATACCATGCG--ACTTCCAAATCAATGCTGTCGACAGA-AAGACACCTACCCAGCTCTGAAGAGTTATTTGGTCTCTAGATCTAGGGGCAGATAAGTCAGATTTCCAGAAAGATAGAGCCTGCCTCTTTGTCATTCCATCTCCACTATTCCTTCACTGATGAGAAAGTGATCAGA-----ACTGATGTGGTGTAAACTGCTCTGTAATTCCTGCCTGATTGGCTTTTCTTGAGAGGTGCCTGTCCATTAGCTTTTGCCTTCTTTTTGTCAGGTTCTCTAAACACTTTAAGTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140274459 306 - 143122389 CCCCACCTATGTTTTCAACCATAGTACCATGCG--ACTTCCAAATCAACGCTGTCGATAGA-AAGACACCTACCTAGCTCTGAAGAGTTATTTGGTCCCTAGATCAAGGGGCAGGTAAGTCAGATTTCCAGAAAGATAGAGTCTGCCTCTTTGTCGTTCCATCTCCACTATTCCTTCACTGATGAGAAAGTGATCAGA-----ACTGATGTGGTGTAAACTGCTCTGTAATTCCTGCCTGATTGGCTTTTCTTGAGA-GTGCCTGTCCATTAGCTTTTGCCTTCCTTTTGTCA-GCTCCCTAAACACTTTAAGTAA i nomLeu3.chr5 C 0 M 468 s rheMac3.chr1 16983431 308 - 229590362 CCCCACCTATGTTTTCAACCACAATACCATGTG--ACTTCCAAGTCAACGCTGTTGATAGA-AAGACACGTACCCAGCTCTGAAGAGTTATTTGCTCCCTAGATCAAGGGGCAGATAAGTCTGATTTCCAGAAAGATAGAGCCTGCCTGTTTGTCATTCCATCTCCACTATTCCTTCACCGATGAGAAAGTGATCAGA-----AGTGATGTGGTATAAGCTGCTCTGTAATTTCTGCCTGATTGGCGTTTCTTGAGAGGTGGCTGTCCAGTGGCTTTTGCCTTCCTTTTGTCAGGCTCTCTGAACACTTTAAGTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223746841 308 - 227556264 CCCCACCTATGTTTTCAACCACAATACCATGTG--ACTTCCAAGTCAACGCTGTTGATAGA-AAGACACGTACCCAGCTCTGAAGAGTTATTTGCTCCCTAGATCAAGGGGCAGATAAGTCTGATTTCCAGAAAGATAGAGCCTGCCTGTTTGTCATTCCATCTCCACTATTCCTTCACCGATGAGAAAGTGATCAGA-----AGTGATGTGGTATAAGCTGCTCTGTAATTTCTGCCTGATTGGCGTTTCTTGAGAGGTGGCTGTCCAGTGGCTTTTGCCTTCCTTTTGTCAGGCTCTCTGAACACTTTAAGTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16797017 308 - 220367699 CCCCACCTATGTTTTCAACCACAATACCATGTG--ACTTCCATGTCAACGCTGTTGATAGA-AAGACACGTACCCAGCTCTGAAGAGTTATTTGCTCCCTAGATCAAGGGGCAGATAAGTCTGATTTCCAGAAAGATAGAGCCTGCCTGTTTGTCATTCCATCTCCACTATTCCTTCACCGATGAGAAAGTGATCAGA-----AGTGATGTGGTATAAGCTGCTCTGTAATTTCTGCCTGATTGGCGTTTCTTGAGAGGTGGCTGTCCAGTGGCTTTTGCCTTCCTTTTGTCAGGCTCTCTGAACACTTTAAGTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82595425 308 + 85787240 CCCCACCTATGTTTTCAACCACAATACCATGTG--ACTTCCAAGTCAACGCTGTTGATAGA-AAGACACCTACCCAGCTCTGAAGAGTTATTTGCTCCCTAGATCAAGGGGCAGATAAGTCTGATTTCCAGAGAGATAGAGCCTGCCTGTTTGTCATTCCATCTCCACTATTCCTTCACCGATGAGAAAGTGATCAGA-----AGTGATGTGGTATAAGCTGCTCTGTAATTTCTGCCTGATTGGCGTTTCTTCAGAGGTGGCTGTCCAGTGGCTTTTGCCTTCCTTTTGTCAGGCTCTCTGAACACTTTAAGTAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14276282 304 - 49578535 ccCCACCTGTAGTTTTAACCACAGTACCATGCT--ACTTCCAAATCAACGCTGTTGATAGA-AAGATAGCTACCCAGCTCTGAAGAGTTATTTGGTCCCT--ATCAAGGGGCAGAGAA-TCAGATATCCAGAAAGCTAGAGCCGGCCTCTTTGTCATCCCGGCCCTCCCGCCCCTTCACTGGTGAGAAGGTGATTAGA-----CCTGATATGGTGTGAACTGCCGTGTGACTCCTGCCTGACTGGCTTTCCTTGAGAGACGCCTGTCCATTAGCCTTTGCCTTCCTTTTGTCAGGCTCTCTAAACACTTC-AGTAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178838543 240 + 195471971 cctcaCCTTTACCTGTGACTACTGCACCACACACTGCTTC--------TGTTGTGGATTGACAAGAGATCTGCCCAGTTAAGGAAAGTTATTTGGTTCCTAGATGTCAGAGCAGAGGGGCTAGATTTTCAGACAGACGGAG----------TGTCTTTCC----CTAGTGTTCC----------------TGTTCCAA---------------TGTGAACTGCTTCACAATTCCCTGGAGACTGGTTCTTCTGGAGAGGTGTGT---CACTGGCTTTGGCCTT-----------GATCTCTC---------AGTGA i mm10.chr1 I 435 C 0 s canFam3.chr7 36419537 286 + 80974532 ACCTGCCAGTGTTACT-ACCCCGGCACCACACC--ACTTTCAAAGAAACGTTGTTGACTGT-GAGACATCTACCCAGTTGTGAGAAGTTATTTGACCCCTAGAAGGAGAAGCAGATCAGTCTCATTTCCAGGTCGATAGAG----CTGCTTTATCATCCTG-CTCTACTGATCCTTCACAGATGA------------------GACGACTTAGGGTAAACCATTCCATAATTCCATACCAATTAGCTTTTCTTGAAA---GCTTGTCTGTTACCTTTTGCCTTCCTTTTATTAGGCTCTCTGAACACTTTCAGTAA i canFam3.chr7 C 0 C 0 a score=257254.000000 s hg38.chr1_KI270759v1_alt 265904 95 + 425601 CAGAATCAATTAAGCCTTCCTCACGATTTTAGAAAACTAAGTGGTAGCTCAGGAGGGGAGTCATCCTAACAAGCTGTCTGTGTAGACAGTGGATT s panTro4.chr1 225022727 95 + 228333871 CAGAATCAATTAAGCCTTCCTCACGATTTTAGAAAACTAAGTGGTAGCTCAGGAGGGGAGTCATCCTGACAAGCTGTCTGTGTAGACAGTGGATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226391636 95 - 229942017 CAGAATCAATTAAGCCTTCCTCACGATGTTAGAAAACTAAGTGGTAGCTCAGGAGGGGAGTCATCCTGACAAGCTGTCTGTGTAGACAGTAGATT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16983739 95 - 229590362 CAGAATCAATTAAGCCTTTCTCACGATTTTAGAAATCTAAGTGGTAGCTCAGGAGGGGAGTCACCCTGACGAGCTGTCTGTATAGGCAGTAGATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223747149 95 - 227556264 CAGAATCAATTAAGCCTTTCTCACGATTTTAGAAATCTAAGTGGTAGCTCAGGAGGGGAGTCACCCTGACGAGCTGTCTGTATAGGCAGTAGATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16797325 95 - 220367699 CAGAATCAATTAAGCCTTTCTCACGATTTTAGAAAACTAAGTGGTAGCTCAGGAGGGTAGTCACCCTGACGAGCTGTCTGTATAGGCAGTAGATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82595733 95 + 85787240 CAGAATCAATTAAGCCTTTCTCATGATTTTAGAAATCTAAGTGGTAGCTCAGGAGGGGAGTCACCCTGACGAGCTGTCTGTATAGGCAGTAAATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14276586 94 - 49578535 CAGAGTCAATTAAGCCTTTCTCACGATTTTAGAAGATAAAGTGGTAGCTCAGGAGGGCA-TCATCCTGACAAGCTGTCTGTGCAGGCAGCGGATT i calJac3.chr19 C 0 C 0 s mm10.chr1 178838783 78 + 195471971 ----------CAGGCCCTTCTCTGGTATTTAGAGAGCTGTGCAGTCTCTCAGAAGAGTTACCAC----ACCAGCTCT---TGGGTACAGGGAAGT i mm10.chr1 C 0 C 0 s canFam3.chr7 36419823 95 + 80974532 TGGAATTACTTAAGCCTTTCTCTTGGCTTTGAACAAATAAGCAGAAACTCAGGAGAGAAGTCCTTCTGGTACGTTCACTGTGTGTACAATGGATT i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140274765 468 - 143122389 M a score=2557514.000000 s hg38.chr1_KI270759v1_alt 265999 675 + 425601 CTGTATTGTCG-CTTT-------TGTTTCTCAAAG-----GTTTGGG-------TTTGGTCAGAGGTTAC--CAAGGAACCTTCGCTATATTTCCACAGATTCTTTTGTGAGCCTCTAGTTCACGCCCTGTAAGGACATTCATCCT-TCTCTGTCCTTGGGAGACGTAGGAAAATTATTTCCTG--GAGAAATCAGGCGCTTGTAAGAGCCAGCCTTTCAAAGAGGTATCTACCATC--AAAGGGGCTAATCGTCCGAGTGACAGACACGCATGGCTGGCTTCCCTCTTTACTCTGCCTTGATTGAGACAAGATGAGCGTGCTGCTGGCCTTAGCAATGGGGGATTCTGTTAGAACAATATCCTCAGGGAATAGCTTTTATCTGCTAAGTATGACAAGTGTGGCAACTGTGCACAGAGTCCAGATCTCACGACCTCGCTTTGCAAAGGCTACAAGACCAA-GGGCTTGTGTACCTGC-CCCAACAGAGACAGGCTGACTCTTACTACGTGGCCGTAGGAATGGTTTGCCCTTGC---TCAGGACTTATTTACCTAATGTCGTTTGGCCTGGAATGTTTCAGAGCACCCTTTCATGCCTGGTCAGGGTT---------GTGATCCCTTTTGGAGACAGAAGGAGGTAGAC-G-TGCTTTTGTGTTTCCGACACTGAGGACATTGAGGTTCTGGGGGATTCATCACTTAGCTCCCAACTC s panTro4.chr1 225022822 675 + 228333871 CTGTATTGTGG-CTTT-------TGTTTCTCAAAG-----GTTTGGG-------TTTGGTCAGAGGTTAC--CAGGGAACCTTCGCTATATTTACACAGATTCCTTTGTGAGCCTCTAGTTCACGCCCTGTAAGGACATTCATCCT-TCTCTGTCCTTGGGAGACGTAGGAAAATTATTTCCTG--GAGAAATCAGGCGCTTGTAAGAGCCAGCCTTTCAAAGAGGTATCTACCATC--AAAGGGGCTAATCGTCCGAGTGACAGACACGCATGGTTGGCTTCCCTCTTTACTCTGCCTTGATTGAGACAAGATGAGCGTGCTGCTGGCCTTAGCAATGGGGGATTCTGTTAGAACAATATCCTCAGGGAATAGCTTTTATCTGCTAAGTATGACAAGTGTGGCAACTGTGCACAGAGTCCAGATCTCACGACCTTGCTTTGCAAAGGCTACAAGACCAA-GGGCCTGTGTACCTGC-CCCAACGGAGACAGGCTGACTCTTACTACCTGGCCGTAGGAATGGTTTGCCCTTGC---TCAGGACTTATTTACCTAATGTCGTTTGGCCTGGAATGTTTCAGAGCACCCTTTCATGCCTGGTCAGGGTT---------GTGATCCCTTTTGGAGACAGAAGGAGGTAGAC-G-TGCTTTTGTGTTTCCGACACTGAGGACATTGAGGTTCTGGGGGATTCATCACTTAGCTCCCAACTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226391731 675 - 229942017 CTGCATTGTGG-CTTT-------TGTTTCTCAAAG-----GTTTGGG-------TTTGGTCAGAGGTTAC--CAGGGAACCTTCGGTATATTTACACAGATTCCTTTGTGAGCCTCTAGTTCACGCCTTGTAAGGACATTTATCCT-TCTCTGTCCTTGAGAGACGTAGGAAAATTATTTCCTG--GAGAAATCAGGCGCTTGTAAGAGCCAGCCTTTCAAAGAGGTATCTACCATC--AAAGGGGCTAATCGTCCGAGTGACAGACACGCATGGCTGGCTTCCCTCTTTACTCTGCCTTGATTGAGACAAGATGAGCGTGCTGCTGGCCTTAGCAATGGGGGATTCTGTTAGAACAATATCCTCAGGGAATAGCTTTTATCTGCTAAGTATGACAAGTGTGGCAACTGTGCAAAAAGTCCAGATCTCACGACCTCGCTTGGCAAAGGCTGCAAAACCAA-GGGCCTGTGTACCTGC-CCCAACAGAGACAGGCTGACTCTTACTACGTGGCCGTAGGAACGGTTTGCTCTTGC---GCAGGACTAATTTACCTAGTGTCGTTTGGCCTGGAATGTTTCAGAGCACCCTTTCATGCCTGGTCAGGGTT---------GTGATCCCTTTTGGAGACAGAAGGAGGTAGAC-G-TGCTTTTGCGTTTCGGATACTGAGGACATTGAGGTTCTGGGGGATTTATCACTTAGCTCCCAACTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140275233 672 - 143122389 CTATATTGTGG-CTTT-------TGTCTCTCTAAG-----GTTTGGG-------TTTGGTC-GCGGTTAC--CATGGAAGCTTCGGTATATTTACACAGATTCCTTTGTGAGCCTCTATTTCTCGCCCTGTAAGGACATTCATCCT-TCTCTGTCCTTGAGAGATGTATGAAAATTATTTCCTG--GAGAAATCAGGTGCTTGTAATAGCCAGCCTTTCAAGGAGGTATCTCCCATC--AAAGAGGCTAATCGTCCGAGTGACAGACACACATGGCTGGCTTCCCTCTTCACTCTGCCTTGATTGAGACGAGATGAGCGTGCTGTTGGCCTTAGCAATGGGGGATTCTGTTAGAACAATATCCTCAGGGAATAGCTTTTATCTG-TAAGTATGGCAAGTGTGGCAACTGTACACA-AGTCCAGATCTCACAACCTCGCTTTGCAAAGGCTGCAAGACCAA-GGGCCTGTGTACCTGC-CCCAACAGAGACAGGCTGACTCTTACTACGTGGCCGTAGGAACGGTTTGCCCTTGC---GCAGGACTTATTTACCTAATGTCGTTTGGCCTGGAATGTTTCAGAGCACCCTTTCATGCCTGGTCAGGGCT---------GTGATCCCTTTTGGAGACAGAAGGAGGTAGAC-G-TGCTTTTGTGTTTCGGACACTGAGGACATTGAGGTTCTGGGGGATTCATCACTTAGCTCCCAACTC i nomLeu3.chr5 M 468 C 0 s rheMac3.chr1 16983834 674 - 229590362 CTATATTGTGG-CTTT-------TGTTTCTCAAAG-----GTTTGGG-------TTTGGTCAGAGGTTAC--CAGGGAACCTTCGGTATGTTTACACAGATTCCTTTGTGAGCCTCTAGTTCACGCCCTATAAGGACATTCATCCT-TCTCTGTCCTTGAGAGACGTAGGAAAATTATTTCCTG--GAGAAATCAGGTGCTTGTAAGAGCCAGCCTTTCAAAAAGGCATCTACCATC--AAAGGGGCTAATCGTCCGAGTGACAGACACGCATGGCTGGCTTCCCTCTTTACTCTGCCTTGATTGAGACAAGATGAGCGTGCTGCTGGCCTTAGCAATGGGGGATTCTGTTAGAACAATATCCTCAGGGAATAGCTTTTATCTGCTAAGTATGACAAGTGTGGCAAACGTGCACAGAGTCCAGATCTCACGACCTCGCTTTGCAAAGGCTGTAAGACCAA-GAGCCCGTGTACCTGC-CCCAACAGGGATAGGCTGACTCTTACTACGTAGCCATAGGAATGGTTTGCCCTTGC---GCGGGACTTATTTACCTAATGTCGTTCGGCCTCGGATGTTTCCGAGCACCCTTTCATGCC-GGTCAGGGTG---------GTGATCCCTTTTGGAGACAGGAGGAGGTAGAC-G-TGCTTTTGCATTTCAGACACTGAGGACGTTGAGGTTCTGGGGGATTCATCACTTAGCTCCTAACTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223747244 674 - 227556264 CTATATTGTGG-CTTT-------TGTTTCTCAAAG-----GTTTGGG-------TTTGGTCAGAGGTTAC--CAGGGAACCTTCGGTATGTTTACACAGATTCCTTTGTGAGCCTCTAGTTCACGCCCTATAAGGACATTCATCCT-TCTCTGTCCTTGAGAGACGTAGGAAAATTATTTCCTG--GAGAAATCAGGCGCTTGTAAGAGCCAGCCTTTCAAAAAGGCATCTACCATC--AAAGGGGCTAATCGTCCGAGTGACAGACACGCATGGCTGGCTTCCCTCTTTACTCTGCCTTGATTGAGACAAGATGAGCGTGCTGCTGGCCTTAGCAATGGGGGATTCTGTTAGAACAATATCCTCAGGGAATAGCTTTTATCTGCTAAGTATGACAAGTGTGGCAAACGTGCACAAAGTCCAGATCTCACCACCTCGCTTTGCAAAGGCTGTAGGACCAA-GAGCCCGTGTACCTGC-CCCAACAGGGATAGGCTGACTCTTACTACGTAGCCATAGGAATGGTTTGCCCTTGC---GCGGGACTTATTTACCTAATGTCGTTCGGCCTCGGATGTTTCCGAGCACCCTTTCATGCC-GGTCAGGGTG---------GTGATCCCTTTTGGAGACAGGAGGAGGTAGAC-G-TGCTTTTGCATTTCAGACACTGAGGACGTTGAGGTTCTGGGGGATTCATCACTTAGCTCCTAACTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16797420 674 - 220367699 CTATATTGTGG-ATTT-------TGTTTCTCAAAG-----GTTTGGG-------TTTGGTCAGAGGTTAC--CAGGGAACCTTCGGTATGTTTACACAGATTCCTTTGTGAGCCTCTAGTTCACGCCCTGTAAGGACATTCATCCT-TCTCTGTCCTTGAGAGACGTAGGAAAATTATTTCCTG--GAGAAATCAGGCACTTGTAAGAGCCAGCCTTTCAAAAAGGCATCTGCCATC--AAAGGGGCTAATCGTCCGAGTGACAGACACGCATGGCTGGCTTCCCTCTTTACTCTGCCTTGATTGAGACAAGATGAGCATGCTGCTGGCCTTAGCAATGGGGGATTCTGTTAGAACAATATCCTCAGGGAATAGCTTTTATCTGCTAAGTATGACAAGTGTGGCAAACGTGCACAAAGTCCAGATCTCACGACCTCGCTTTGCAAAGGCTGTAAGACCAA-GAGCCTGTGTACCTGC-CCCAACAGAGATAGGCTGACTCTTACTACGTAGCCATAGGAATGGTTTGCCCTTGC---GCAGGACTTATTTACCTAATGTCGTTTGGCCTCGGATGTTTCCGAGCACCCTTTCATGCT-GGTCAGGGTG---------GTGATCCCTTTTGGAGACAGGAGGAGGTAGAC-G-TGCTTTTGCATTTCAGACACTGAGGACATTGAGGTTCTGGGGGATTCATCACTTAGCTCCTAACTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82595828 675 + 85787240 CTATATTGTGG-CTTT-------TGTTTCTCAAAG-----GTTTGGG-------TTTGGTCAGAGGTTAC--CAGGGAACCTTCGGTATATTTACACAGATTCCTTTGTGAGCCTCTAGTTCACGCCCTGTAAGGACATTCATCCT-TCTCTGTCCTTGAGAGACGTAGGAAAATTATTTCCTG--GAGAAATCAGGCGCTTGTAAGAGCCAGCCTTTCAAAAAGGCATCTACCATC--AAAGGGGCTAATCGTCCGAGTGACAGACACGCATGGCTGGCTTCCCTCTTTACTCTGCCTTGATTGAGACAAGATGAGCGTGCTGCTGGCCTTAGCAATGGGGGACTCTGTTAGAACAATATCCTCAGGGAATAGCTTTTATCTGCTAAGTATGACAAGTGTGGCAAATGTGCACAAAGTCCAGAACTCACGACCTCGCTTTGCAAAGGCTGTAAGACCAA-GAGCCTGTGTACTTGC-CCCAACAGAGACAGGCTGACTCCTACTACGTAGCCATAGGAATGGTTTGCCCTTGC---GCAGGACTTATTTACCTAATGTCGTTTGGCCTTGAATGTTTCCGAGCACCCTTTCATGCCTGGTCAGGGTG---------GTGATCCCTTTTGGAGACAGGAGGAGGTAGAC-G-TGCTTTTGCATTTCAGACACTGAGGACGTTGAGGTTCTGGGGGATTCAACACTTAGCTCCTAACTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14276680 662 - 49578535 CTGTACCGTGG-CTTT-------TGCTTCTCAAAG-----GCTTGGG-------TCTGGTCAGAGGTTAC--CAGGGTGCGTTCAGTATATTTACACCAATTCCTTTGTGAGCCTCTAGTTCACACCCTGTAAGGACATTCATCCT-TTTCTGTCCTTGAGGGACGTAGGAAAATTACTTCCTG--GAGAAATCAGGTGCTTGTAAGAGCCAGCCTTTCAAAGAGGCATCTACACTTTGAAAGGAGCTAATCGTCCAAGCGACAGGCACGCATGGCCGGCTTCCCTCTTTGCTCGGCCTTGATTGACACAAGACGCGCGTGCTGCTGGCCTTAGCAATGGGGGATTCCGTCAGAACAATA--CTCAGGGAATCGCTTTTATCTGAGGAGTATGACACGTGTGGCAAATGTGCACAAAGTCCAGATCTCACGACCTCGCTCTGCAAAGGCTGCAAGACCAG-GGGCCTGTGTACCTGCTCCCGACAGAGACAGGCTGACTCTTACCACGTAGCTGTAGGGATGGTTTGC-CTCAC---ACAGGACTTCCTTACCTAAGGCTGCTTAGCCTGGAGTG-------------TTTCATGCCTGGTCAGGGCG---------GTGATCCCTTTTGGAGACAGTAGGAGGTACAT-G-TGCTTTTGCGTTTCAGACACTGAGGACGTTGAGGTTCTGGAGAATTCACCACTTAGCTCCCAACCC i calJac3.chr19 C 0 I 187 s mm10.chr1 178838861 615 + 195471971 CTATTCCTTGACCTCC-------TGTCATTCACAGATACAGTCTGTG-------CTTAG-CAGAGGTCACTTCACG---CCTGCAGTGTATTGTCACAGATTCTTCTGTGAGCCTGTAGTTCACATGCTATGAGGATATTTGCCCT-TCTCCGCCCTGGAGAGAAACAGGAAAATGATTTCCTGGTGAGAAATCAGGCACTTGTAAGAGCCAGATTTCCAAAGAGGCA-CCGCTGTC--AGGGGGGCTAATCATCCAAATGACGGGCACGCATGGCTGCCTTCCATCTTTCTGCCACCTTGCTTGAGACGAGATGAGTGGGCCGTCGGGC-CAGCGATGGGGAATTCTGTTAGAACAACATCCGCAGGGAATAGC-TTTATCTGCTAAGGATGACAAGTGAGGCCAGTGTACACAAAGCTGGAATGGCATGGCCCTGCTTGGCAAATGCTACAAGACCCA-GGACTGGTGTATCTGT-TCTGGGAGGCAGGGGA-GACGC---CTCTGCCACCCTGGGGGTGGTGGTCTCTGG-------GCACTCTTTT---------CATGTGGCCT--------------------------CTTGGCAGCAGTG---------ATGAGCTC----AGGAAATGGAGGAGATGGAT-GATGTTTTCATGTTTCAGACCCTGAG-----------------TGATCCATTGTTTCCCTCTTCACTC i mm10.chr1 C 0 C 0 s canFam3.chr7 36419918 686 + 80974532 CTGCATTGTGG-CCTTGTCTGTCTGTCTGTCAGAG-----GCCAGGGTTCTGCTTTTGGTCAGAGGTTAT--TAGAGTACCTTCAGGATATTTACACAGATTCCTTTGTGAACCTCCAAATCACACCCTCTGAGGACGTTCATCCCATCTCTGCCCTTGATAGACACAGGAAAATTATTTCCTGGTGAGAAAGCAGGTGCTCGTAAGAGCCAGCCTTTCAAAGAGGTATCTACCGTC--AAAAGGACTAATCGTCTAAATGACAGATGCGCATGGCTGGCTTCCCTCTTTACGC-GCCTTGATTGAGACGGGAGGAGAGTGCTGCTGGCCTTAGCGATGGAGAATTCTGTTAGAACAACATCCTCAGGGAATAGC-TTAATCTACTAAGTGTGACAGGTGTGGCAAATGTGCACAAAGCCCAGATCTCATGGCCTGGCTTTGAAAAGGCTGCAAGACCAAGGGGCCTGTGTACTTGC-TCCCACAGACA-GGACTAACTCAT-CTCCGTTCCTATAGGAGTGGTTTGCCCCAGACAGACAGGATTTATTTACCTTTTGTCATTTGGCCCAGAATGTTCCATATCACCCTTTCACACTTGGCCGTGGCTCCCGTGGCAGTAATCACTTTTGGAAACAGAAGGAGCTAGACAG-TGTGTTCATATTTCAGATACTGAGGG---TGAAGCCCTAGGGA-------------TTCCTGACCA i canFam3.chr7 C 0 C 0 a score=505782.000000 s hg38.chr1_KI270759v1_alt 266674 158 + 425601 TTATTGGGAGCAGAAGTGCCACTGGAGTAGG-GTGGCTGGTTTGAGGGTGTGGCCCCGGGAAAGGTGGCAGGAC-ACACTTCTCTTGTTCTCCAGCCCATTTTCAGGCACGGTATCCTGCGCTGCTAGCACCGTAGCCATCACTGACCTCA----GGACCCTCC s panTro4.chr1 225023497 162 + 228333871 TTATTGGGAGCAGAAGTGCCACTGGAGTAGG-GTGGCTGGTTTGAGGGTGTGGCCCCGGGAAAGGTGGCAGGAC-ACACTTCTCTTGTTCTCCAGCCCATTTTCAGGCATGGTGTCCTGCGCTGCTAGCACCGTAGCCATCACTGACCTCACAGAGGACCCTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226392406 162 - 229942017 TTATTGGGAGCAGAAGTGCCACCGGAGTAGG-GTGGCTGGTTTGAGGGTGCAGCCCTGGGAAAGGTGGCAGGAC-ACACTTCTCTTGTTCTCCAGACCATTTTCAGGCACAGTCTCCTGCGCTGCTAGCACCATAGCCATCAATGACCTCACAGAGGACCCTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140275905 162 - 143122389 TTACTGGGAGCAGAAGTGCCACTGGAGTAGG-GTGGCTGGTTTGAGGGTGCAGCCCCAGGAAAGGTGGCAGGAC-ACGCTTCTCTTGTTCTCCAGACCATTTTCAGGCACAGTCTCCTGCGCTGCTAGGACTGTAGCCATCACTGACCTCACAGAGGACCCTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16984508 161 - 229590362 TTATTGGGAGCAGAAGTGCCACTGGAGTA-G-GTGGCTGGTTTGAGGGTATGACCCCAGGAAAGGTGGCAGGAC-ACACTTCTCTTGTTCTCCAGACCGTTTTCAGGCACGGTCTCCTGTGCTGCTAGCACCATAGCCATCACTGACCTCACAGAGGACCCTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223747918 161 - 227556264 TTATTGGGAGCAGAAATGCCACTGGAGTA-G-GTGGCTGGTTTGAGGGTATGACCCCAGGAAAGGTGGCAGGAC-ACACTTCTCTTGTTCTCCAGACCGTTTTCAGGCACGGTCTCCTGTGCTGCTAGCACCATAGCCATCACTGACCTCACAGAGGACCCTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16798094 161 - 220367699 TTATTGGGAGCAGAAGTGCCACTGGAGTA-G-GTGGCTGGTTTGAGGGTATGACCCCAGGAAAGGTGGCAGGAC-ACACTTCTCTTGTTCTCCAGACCGTTTTCAGGCACGGTCTCCTGTGCTGCTAGCACCATAACCATCACTGACTTCACAGAGGACCCTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82596503 161 + 85787240 TTATTGGGAGCAGAATTGCCACTGGAGTT-G-GTGGCTGGTTTGAGGGTATGGCCCCAGGAAAGGTGGCAGGAC-ACACTTCTCATGTTCTTCAGACCATTTTCAGGCACGGTTTCCTGTGCTGCTAGCACCATAGCCATCACTGACCTCACAGAGGACCCTCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14277529 147 - 49578535 TTACTGGGAACCAATGTGCCACTGGATGAGG-GTGGCTGATTCGGGGGTGTGGCCCGGGAAAAGGTGGCAGGGC-CCACT-----TGTTCCCCAGACCATTTTCAGCCATGGTCTCCTGCCTGGCT----------CCATCACTGACCCCACAGAGGGGCCTCC i calJac3.chr19 I 187 C 0 s mm10.chr1 178839476 137 + 195471971 TCCGTGGGGATAGAGATGCCAGCGTAGCAGG-GGTGGTGGGTTGGTGGGGTATTCCTGCCAGCAAGGCCTGGGCAACATCTGCATTATTC-CCAGGTTGTTCT---------------------CTGGCACCGCAGCCGTC----ACCTCCCACTGGGCCACCC i mm10.chr1 C 0 I 544 s canFam3.chr7 36420604 161 + 80974532 TTCATGGGGACAGAGATGCCACCTGAGTAGGTGGGGTCGGTTTGAGGGTGTCACCCTGAAAAGGAGGGC-GGGC-ATACTTCTCTTTATCCGAGTACTGTTTCTAGGCATGAACTCCTGTG-TGCTGGCCCTGCAGCTGGCACTGACCATGTGCAGGACCCTCC i canFam3.chr7 C 0 C 0 a score=-7883.000000 s hg38.chr1_KI270759v1_alt 266832 5 + 425601 CG-----------------------------------------GTG s panTro4.chr1 225023659 4 + 228333871 CC------------------------------------------TG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226392568 5 - 229942017 CG-----------------------------------------GTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140276067 5 - 143122389 CG-----------------------------------------GTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16984669 46 - 229590362 CGGTGAACACTCAGTGAAAATTCCTACTCGTTACCGTGTCCCGGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223748079 46 - 227556264 CGGTGAACACTCAGTGAAAATTCCTACTCGTTACCGTGTCCCGGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16798255 46 - 220367699 CGGTGAACACTCAGTGAAAATTCCTGCTCGTTACTGTGTCCCAGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82596664 46 + 85787240 CAGTGAACACTCCGTGAAAATTCCTACTCGTTCCAGTGTCCCGGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14277676 5 - 49578535 CA-----------------------------------------GTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36420765 5 + 80974532 -----------------------------------------CATTG i canFam3.chr7 C 0 I 493 e mm10.chr1 178839613 544 + 195471971 I a score=85989.000000 s hg38.chr1_KI270759v1_alt 266837 29 + 425601 AACACTCAGTTAAAATTCCTACTCGCTGC s panTro4.chr1 225023663 29 + 228333871 AACACTCAGTTAAAATTCCTACTCGCTGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226392573 29 - 229942017 AACACTCAGTTAAAATTCCCACTCGCTAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140276072 29 - 143122389 AACACTCAGTTAAAATTCCTACTCGCTAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16984715 29 - 229590362 AACACTCAGTGAAAATTCCTACTCGTTAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223748125 29 - 227556264 AACACTCAGTGAAAATTCCTACTCGTTAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16798301 29 - 220367699 AACACTCAGTGAAAATTCCTACTCGTTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82596710 29 + 85787240 AACACTCAGTGAAAATTCCTACTCGTTAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14277681 29 - 49578535 AGCACTCAGTCACAATTCCTACTCGTTAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178839613 544 + 195471971 I e canFam3.chr7 36420770 493 + 80974532 I a score=625159.000000 s hg38.chr1_KI270759v1_alt 266866 183 + 425601 AGTGGGAAATTTTATGTTATGTGAATTTTATCTCATGATTAAAATTAA----AAATGAAATTTT-AAAAATGAAATATTCAGTTGCCTTTCCTAGAAGGAATCATCCCGATGATACTATTCCTTACTTCTCACATTCATCCCATTCTAATGCCCACATTTACTTCATAATGTATTACCTA-CGTATAGT s panTro4.chr1 225023692 183 + 228333871 AGTGGGAAATTTTATGTTATGTGAATTTTATCTCACGattaaaattaa----aaatgaaatttt-aaaaatgaaatattCAGTTGCCTTTCCTAGAAGGAATCATCCCGATGATACTATTCCTTACTTCTCACATTCATCCCATTCTAATGCCCACATTTACTTCATAATGTATTACCTA-CGTATAGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226392602 183 - 229942017 AGTGGGAAATTTTATGTTATGTGAATTTTATCTCACaattaaaattaa----aaatgaaatttt-aaaaatgaaatattCAGTTGCCTCTCCTAGAAGGAATCATCCCGATGATACTATTCCTTACTTCTCACATTCATCCCATTCTAATGCCCACATTTACTTCACAATGTATTACCTA-CATATAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140276101 183 - 143122389 AGCAGGAAATTTGATGTTATGTGAATTTTTTCTCACaattaaaattaa----aaatgaaatttt-aaaaatgaaatattCATTTGCCTCTCCTAGAAGGAATCATCCCGATGATACTATTCCTTACTTCTCACATTCATCCCATTCTAATGCCCACATTTACTTCACAATGTATTACCTA-CATATAGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16984744 183 - 229590362 GGTGGGAAATTTTATGTTATGTGAATTTTATCTCACAATTAAAGTTAA----AAATGAAATTTT-AAAAATGAAATATTCAGTTGCCTCTCCTAGAAGGAATCATCCCGATGATACTATTCCTTACTTCTCACATTCATCCCATTCTAATGCCCACATTTACTTCACAATCTACTACCTA-CATATAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223748154 183 - 227556264 GGTGGGAAATTTTATGTTATGTGAATTTTATCTCACAATTAAAGTTAA----AAATGAAATTTT-AAAAATGAAATATTCAGTTGCCTCTCCTAGAAGGAATCATCCCGATGATACTATTCCTTACTTCTCACATTCATCCCATTCTAATGCCCACATTTACTTCACAATCTACTACCTA-CATATAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16798330 183 - 220367699 GGTgggaaattttatgttatgtgaattttatctcacaattaaaattaa----aaatgaaatttt-aaaaatgaaatattcagttGCCTCTCCTAGAAGGAATCATCCCGATGATACTATTCCTTACTTCTCACATTCATCCCATTCTAATGCCCACATTTACTTCACAATCTACTACCTA-CATATAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82596739 183 + 85787240 AGTGGGAAATTTTATGTTAGGTGAATTTTATCTCACaattaaaattaa----aaatgaaatttt-aaaaatgaaatATTCAGTTTCCTCTCCTAGAAGGAATCATCCCGATGATACTATTCCTTACTTCTCACATTCATCCCATTCTAATGCCCACATTTGCTTCACAATCTACTACCTA-CATATAGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14277710 180 - 49578535 AGTGGGAAATTTTATGGTATGTGAATTTTATCTCAA----AAAATTAA----AAACAAAGTTTTAAAAAATGAAATCTTCAGTCGCATCTGCTGGAGGGAGTCATCCCGGTGATGCTCTTCCTTACCTCTCACATTCACCCCATTCTGATGCCCACACATATGCTACAGGGTATTACCTA-CATAGAGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178840157 184 + 195471971 agtgggaaattctgtaatgtgtaagttttgtctccaaa--aagGTAAAAGGTAAATTAAAGTAG-AAAACCTAAATATTTAGTCCTGTTTCCTGGGAGAATCACCCCCGGTGGGAT--TTTCTTGCTCCTCTGGTCTGTCCCATGCTAATGCCCAAGTTCAACTTAAGATATAAGGCTCGCCACATAGC i mm10.chr1 I 544 C 0 s canFam3.chr7 36421263 165 + 80974532 aatgggaaattttatgttgtgtgagtttcatctcaa----AACATGAA----AAGTAACATTTA-AAAAATGAAATATT-AATCTCATCTCTTGATAGCA------------GTACTGTCCCTCAGTCTTCACACT-GCCCCACTCTGGAGCCTGAGTTTATTTCAGGATATGTCACATA-TAgaggct i canFam3.chr7 I 493 I 164 a score=95443.000000 s hg38.chr1_KI270759v1_alt 267049 43 + 425601 GTAT-GTTGTTCG-CTTCATTTAGCATGACCCTATGAAATGCCTG s panTro4.chr1 225023875 40 + 228333871 GTAT-GTT---CG-CTTCATTTAGCATGACCCTATGAAATGCCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226392785 40 - 229942017 GTAT-GTT---CG-CTTGATTTAGCATGACCCTATGAAATGCCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140276284 40 - 143122389 GTAT-GTT---TG-CTTTATTTAGCATGACCCTATGAAATGCCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16984927 41 - 229590362 GCAT-GTC---CGTTTTTATGTAGCATGACCCTATGAACCGCCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223748337 41 - 227556264 GCAT-GTC---CGTTTTTATGTAGCATGACCCTATGAACCGCCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16798513 40 - 220367699 GCAT-GTC---CGTTTTTATGTAGCATGA-CCTGTGAACCGCCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82596922 41 + 85787240 GCAT-GTC---TGTTTTTATTTAGCATGACCCTATGAACCGCCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14277890 41 - 49578535 TTAC-GTT---CATTTTTGTTTAGCATGAGCCTGCGAAATGCCTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178840341 41 + 195471971 ACATCGTT---TCTTTCTATTTACTATGA-CCTATGAAACCCCCA i mm10.chr1 C 0 C 0 e canFam3.chr7 36421428 164 + 80974532 I a score=1548581.000000 s hg38.chr1_KI270759v1_alt 267092 447 + 425601 T------GTGACCAAAAGCAGATCAACTGATAAGG-CCTTTTGTGGCTCAGATGTGTCTTTGCGGGGAAAT-GGTCAGGCGTCCTCTGTTGGCAAGGGCACCTGTCCCAAGCAGAAATGGAGAAACACGTCCTCACCTCCTCCTGCCACCTGCTCTGAACA----GATTCTGTAGCGTAAAATTCTTTATAAATACACATATCAATGGAGTTCTTGACATTTTGCCCAGAACCTGAGGAAGAATAAAACCTTTCTTGTCCAACTAAAACACACACGGAATAACAAGCAAAAGCAAAAGAGAAATCCCAAGA-AAACAGACCAGAAACAAAGGGTTATGCTCCGTCATTGTCCCCAAGAGGGTTACACATGAGACTCACAGG-GCAAATTTTATCTAAATTAAAATGCTGATTTTT-CACATTACAGGCCCAAAGTTTACCGAGGTCACAGTGCTTTTAAAA-T s panTro4.chr1 225023915 448 + 228333871 T------GTGACCAAAAGCAGATCAACTGATAAGG-CCTTTTGTGGCTCAGATGTGTCTTTGCGGGGAAAT-GGTCAGGCGTCCTCTGTTGGCAAGGGCACCTGTTCCATGCAGAAATGGAGAAACACGTCCTCACCTCCTCCTGCCACCTGCTCTGAACA----GATTCTGTAGCGTAAAATTCTTTATACATACACATATCAATGGAGTTCTTGACATTTTGCCCAGAACCTGAGGAAGAATAAAACCTTTCTTGTCCAACTAAAACACACACGGAATAACAAGCAAAAGCAAAAGAGAAATCCCAAGA-AAACAGACCAGAAACAAAGGGTTATGCTCCGTCATTGTCCCCAAGAGGGTTACACATGAGACTCACAGG-GCAAATTTTATCTAAATTAAAATGCTGATTTTT-CACATTACAGGCCCAAAGTTTACTGAGGTCACAGTGCTTTTAAAAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226392825 448 - 229942017 T------GTGACCAAAAGCAAATCAACTTATAAGGCCCTTTTGTGGCTCAGATGTGTCTTTGCAGGGAAAT-GGTCAGGCGTCCTCTGTTGGCAAGGGCACCTGTCCCATGCAGAAGTGGAGAAACACGTCTTCACCTCCTCCTGCCACCTGCTCTGAACA----GATTCTGTAGCATAAAATTCTTTATGAATACACAGATCAGTAGAGTTCTTGACATTTTGCCCAGAACCTGAGGAAGAATAAAACCTTTCTTGTCCAACTGAAACACACACGGAATAACAAGCAAAAGCAAAAGAGAAATCCCAAGA-AAACAGACCAGAAACAAAGAGTTATGCTCTGTCATTGTCCCCAAGAGGGTTACCCATGAGACTCACAGG-GCAAATTTTACCTAAATTAAAATGCTGATTTTT-CACATTAAAGGCCCAAAGTTTACCGAGGTCACAATGCTTTTAAAA-T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140276324 448 - 143122389 T------GTGACCAAAAGCAAATCAACTTATAAGGCCCTTTTGTGGCTCAGATGTGTCTTTGCGGGGAAAT-GGTCAGGCGTCCTCTGTTGGCAAGGGCACCTGTCCCATGCAGAGGTGGAGAAACACGTCCTCACCTCCTCCTGCCACCTGCCCTGAACA----GATTCTGTAGCGTAAAATTCTTTATAAATACACATATCAATAGAGTTCTTGACATTTTGCCCAGAACCTGAGGAAGAATAAAACCTTTCTTGTCCAACTGAAACACACACGGAATAACAAGCAAAAGCAAAAGAGAAATCCCAAGA-AAACAGACCAGAAACAATGGGTTATGCTCCGTCATTGTCCCCAAGAGGGTTACACATGAGACTCACAGG-GCAAATTTTATCTAAATTAAAATACTGATTTTT-CACATTAAAGGCCCAAAGTTTACCGAGGTCACAATGCTTTTAAAA-T i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16984968 448 - 229590362 T------CTGCCCAAAAGCAAATCAACTTATAAGG-CCCCTTGTGGCTCCGATGTGTCCTTGCGGGGAAAT-GAGCAGGCGCACTCTGTTGGCAAGGGCACCTGTCCCATGCAGAAGTGGGGAAACATGCCCTCACCTCCTCCTGCCACCTGCTCTGAACA----CATTCTGTAGCGTAAAATTCTTTATAAATACACATATCAACAGAGTTCTTGACGTTTTGCCCAGAACCTGAGGAAGAATAAAGCCTTTCTTGCCCAACTGAAACACACACGGAATAACAAGCAAAAGCAAAAGAGAAATCCCAAGAAAAACAGACCAGAAACAAAGGGTTATGCTCTGTCATTGTCCCCAAGAGGGTTACACGTGAGACTCACAGA-GCAAATTTTATCTACATTAAAATACGGATTTTT-CACATTAAAGGCCCAAAGTTTACTGAGGTCACAATGCTTTTAAAA-T i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223748378 448 - 227556264 T------CTGCCCAAAAGCAAATCAACTTATAAGG-CCCCTTGTGGCTCCGATGTGTCTTTGCGGGGAAAT-GAGCAGGCGCACTCTGTTGGCAAGGGCACCTGTCCCATGCAGAAGTGGGGAAACATGCCCTCACCTCCTCCTGCCACCTGCTCTGAACA----CATTCTGTAGCGTAAAATTCTTTATAAATACACATATCAACAGAGTTCTTGACGTTTTGCCCAGAACCTGAGGAAGAATAAAGCCTTTCTTGCCCAACTGAAACACACACGGAATAACaagcaaaagcaaaagagaaatcccaagaaaaaCAGACCAGAAACAAAGGGTTATGCTCTGTCATTGTCCCCAAGAGGGTTACACGTGAGACTCACAGA-GCAAATTTTATCTACATTAAAATACGGATTTTT-CACATTAAAGGCCCAAAGTTTACTGAGGTCACAATGCTTTTAAAA-T i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16798553 448 - 220367699 T------CTGCCCATAAGCAAATCAACTTACAAGG-CCCCTTGTGGCTCCGATGTGTCTTTGCGGGGAAAT-AGTCAGGCGTACTCTGTTGGCAAGGGCACCTGTCCCATGCAGAAGTGGAGAAACATGCCCTCACCTCCTCCTGCCACCTGCTCTGAACA----CATTCTGTAGCGTAAAATTctttataaatacacatatcaaCAGAGTTCTTGACGTTTTGCCCAGAACCTGAGGAAGAATAAAGCCTTTCTTGCCCAACTGAAACACACACGGAATaacaagcaaaagcaaaagagaaatccCAAGAAAAACAGACCAGAAACAAAGGGTTATGCTCTGTCATTGTCCCCAAGAGGGTTACACGTGAGACTCACAGA-GCAAATTTTATCTACATTAAAATACGGATTTTT-CACATTAAAGGCCCAAAGTTTACTGAGGTcacaatgcttttaaaa-t i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82596963 448 + 85787240 T------CTGCCCAAAAGCAAATCAACTTATAAGG-CCCCTTGTGGCTCAGATGTGTCTTTGCAGGGAAAT-GGTCAGGCGCACTCTGTTGGCAAGGGCACCTGTCCCATGCAGAAGTGGAGAAACATGCCCTCACCTCCTCCTGCCACCTGCTCTGAACA----CATTCTGTAGCGTAAAATTCTTTATAAATACACATATCAATAGAGTTCTTGACATTTTGCCCAGAACCTGAGGAAGAATAAAACCTTTCTTGCCCAACTGAAACACACACAGAATAACAAGCAAAAGCAAAAGAGAAATCCCAAGACAAACAGACTAGAAACAAAGGGTTATGCTCTGTCATTGTTCCCAAGAGGGTTACACATGAGACTCACAGA-GCAAATTTTATCTACATTAAAATACTGATTTTT-CACATTAAAGGCCCAAAGTTTACTGAGGTCACAATGCTTTTAAAA-T i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14277931 444 - 49578535 T------CGGAGCAAAGGCAAATCAACTTAGCAGGCCCTTTTGTGGCTTGGATGTGCCTTTTCAGGGAAAT-GGCCAGGTGTCCTCTGTTGGCAAGAGCACCTGTTCCATATACAAGTGGAGAAACACGTCCTCACCTACTCCTGCCGCCTTCTCTGAACGC--CGATTCTACAGCGTAAAATTCTTTATAAATACACGTGTCAATAGACTTCTTGACATTTTGCCCAGAACCTGGGGAAGAATAAAACCTTTCTCACCCAACTAAAACACACACACAATAAC------AAGCAACAGAGAAATCCGGAGA-ACACAGGCCAGAAACAAAGGGTTATGCTCTGCCACTGTCCCCAAGAGGATTACAGGCAGGACTCACAGACGCAAAGTTTATCTAAATTAAAATACTGATTTTT-CATATTAAAGACCCAAAGTTGACCAAGGTCACAATGCTTTTAAAT-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178840382 429 + 195471971 TCTAGACCTGGATGAAAGCTAGCAGAGTCACCGGGCCCTCATGCAGCTT------------------GAAT-GCCCAGGT---CTCTGTCAGGAAGCACGCTGGCTAGATA-AGAAGC--AGAAAGCGGAACCCACTGTTCCCTGCCTCCTGCTCAGAACACTTTGATTCTCTGGTGTGAATGTTTTTATAAATATACACATCAACAGAGTTCTTGACATTCTGCCCAG-ACCTGAAGAGGGACAGAAGCTTTCTAACTGAGATGGAACACACGGAGAATAAGAAAC--AATCGAGGAAGAAGTCACAAA--GACTGAAGGAGAGATGGAGGGGTCCACCTCCCCA-TGGCCCCTAGTGGGATATGTAGGGTACTTA-GGT-GCAAATTTAACCTAAATTAAAATACTGACTTCTATGCATTAAAACCTAAAGGTTTGCCTAAGCCATCACATTGTTTAAA-T i mm10.chr1 C 0 C 0 s canFam3.chr7 36421592 409 + 80974532 T------CTGAACAAAGGT-GGCCACGTAACCAAGCCCTTTTGTGGCTCAGACATGTATGCTGGGAGCAGTAGGCTCAGCCTCCTCTGTTGGAAGGGGTGCCTGCCTGATACAGAAAC-GAGAAACACATCCTCACCCCTTCCTGCTACCTGCCCTAAACA---------------------------CTGAATGTACATATGGATAAAATTCTTGACATTTCACTCAGTACCTGAGGAGGAAT----------------ATCTGAAACATGAGCAGAATAAAATGCAAATGCCAAGAGGAAATTCCAGGA-ACACAGAAGAGAAACCAAATTTTCAGCTTTGCCATTGTCCCTGGGATTGTTACAAGTGGGACTCACAGATGCAAATTTTATCTGAATTAAAATACTGATTTTT-CACATGAAAGCCCCTAAGTTTGCATAGGTCACAATGCTTTTGAAA-T i canFam3.chr7 I 164 C 0 a score=16142.000000 s hg38.chr1_KI270759v1_alt 267539 5 + 425601 TAATG s panTro4.chr1 225024363 5 + 228333871 TAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226393273 5 - 229942017 CAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140276772 5 - 143122389 TAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16985416 5 - 229590362 TAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223748826 5 - 227556264 TAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16799001 5 - 220367699 taatg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82597411 5 + 85787240 TAATG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178840811 5 + 195471971 ACATG i mm10.chr1 C 0 I 299 s canFam3.chr7 36422001 5 + 80974532 TAATG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14278375 0 - 49578535 C a score=198175.000000 s hg38.chr1_KI270759v1_alt 267544 85 + 425601 Aggccgggagcagcggct-cacgcctgtaatcccagcacttttggaggccaacgcgggtg-gatcacgaggtcaggagtttgagacc s panTro4.chr1 225024368 85 + 228333871 Aggctgggagcagcggct-cacgcctgtaatcccagcactttcggaggccaacgcgggcg-gatcacgaggtcaggagtttgagacc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226393278 85 - 229942017 Aggccgggagcagcggct-cacgcctgtaatcccagcacttttggaagccaacatgggca-gatcacgaggtcaggagtttgagacc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140276777 85 - 143122389 Aggccgggagcggcggct-cacgcctgtaatcccagcacttttggaggccaatgcgggcg-gatcacgaggtcaggagttcaagacc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16985421 85 - 229590362 Aggccgggagcagtggct-catgcctgtaatcccagcactttgggaggccgaggcgggcg-gatcacgaggtcaggagttcgagacc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223748831 85 - 227556264 Aggccgggagcagtggct-catgcctgtaatcccagcactttgggaggccgaggcgggcg-gatcacgaggtcaggagttcgagacc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16799006 85 - 220367699 aggccgggagcagtggct-catgcctgtaatcccagcactttgggaggctgaggcgggcg-gatcacgaggtcaggagttcgagacc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82597416 85 + 85787240 Aggccgggagcagtggct-cacgcctgtaatcccagcagtttgggaggccgaggtgggca-gatcacgagggcaggagttcgacact i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36422006 86 + 80974532 -AATGGAGAggggtgtctgggtggctcagttggcagtgctcttgttatcagctcaggtcatgatctcagggttgtgagattgagccc i canFam3.chr7 C 0 I 67 e mm10.chr1 178840816 299 + 195471971 I e calJac3.chr19 14278375 0 - 49578535 C a score=210657.000000 s hg38.chr1_KI270759v1_alt 267629 91 + 425601 agcttgcccaacatgacgaaaccccgtctctactaaaaatacaa-aaaattagccgggcgtggtggtgggtgcctatagtcccagctactca s panTro4.chr1 225024453 91 + 228333871 agcttgcccaacatgatgaaaccccgtctctactaaaaatacaa-aaaattagccgggcgtggtggtgggtgcctatagtcccagctactca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226393363 91 - 229942017 agcctggccaacatgatgaaaccccatctctactaaaaatacaa-aaaattagccgggcgtggtggtgcgcgcctatagtcccagctactca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140276862 92 - 143122389 agcttgcccaacatgatgaaaccccgtctctactaaaaatacaagaaaattagctgggtgtggtggtgcgcgcctatagtcccagctactca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16985506 91 - 229590362 agcttgctcaacatggtgaaaccctgtctttactaaaaatataa-aaaattagccaggcgttgtggtgcgcgcctatagtcccagctactcA i rheMac3.chr1 C 0 I 157 s macFas5.chr1 223748916 91 - 227556264 agcttgctcaacatggtgaaaccctgtctttactaaaaatataa-aaaattagccaggcgttgtggtgcgcgcctatagtcccagctactca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16799091 91 - 220367699 agcttgctcaacatggtgaaaccctgtctttactaaaaatataa-aaaatcagccaggcgttgcggtgcgtgcctatagtcccagctactca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82597501 91 + 85787240 agcttgctcaacatggtgaaaccccgtctctactaaaaatataa-aaaattagccaggtgttgtggtgtgcgcctatagtcccagctactca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178840816 299 + 195471971 I e canFam3.chr7 36422092 67 + 80974532 I e calJac3.chr19 14278375 0 - 49578535 C a score=162016.000000 s hg38.chr1_KI270759v1_alt 267720 101 + 425601 ggaggctgaggcagaagaatcgcttgaacccaggaggtggaggttgcagtgacccaagatcgagccactgcaatccagcctgggtgacagagctagacttt s panTro4.chr1 225024544 101 + 228333871 ggaggctgaggcagaagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcgagccactgcaatccagcctgggtgacagagctagacttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226393454 101 - 229942017 ggaggctgagacagaagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcgagccacggcaatccagcctgggtgacagagctagacttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140276954 101 - 143122389 ggaggctgaggcagaagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcgagccactgcattccagcctgggtgacagagctagacttt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223749007 90 - 227556264 ggagactgaggcagaagaatcacttgaacccaggaggcggaggttgcagt-----------gagccactgtaatacagcttgggtgacagagctagacttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16799182 90 - 220367699 ggagactgaggcagaagaatcacttgaacccaggaggcggaggttgcagt-----------gagccactgcaatacagcttgggtgacagagctagacttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82597592 90 + 85787240 ggagactgaggcagaagaatgaattgaacccaggaggtggaggttgcagt-----------aagccactgcaatccagcctgagtgacagagctagacttt i chlSab2.chr25 C 0 C 0 e mm10.chr1 178840816 299 + 195471971 I e canFam3.chr7 36422092 67 + 80974532 I e calJac3.chr19 14278375 0 - 49578535 C e rheMac3.chr1 16985597 157 - 229590362 I a score=24471.000000 s hg38.chr1_KI270759v1_alt 267821 31 + 425601 gtctcacaaaaaaattaaaaaagaaTAATAA s panTro4.chr1 225024645 31 + 228333871 gtctcacaaaaaaattaaaaaagaataataa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226393555 31 - 229942017 gtctcaaaaaaaaaaataataataataataa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140277055 22 - 143122389 gtctcaaa---------aataataataataa i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223749097 20 - 227556264 gtctca-----------aataataataataa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16799272 24 - 220367699 gtctca-------atataataataataataa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82597682 20 + 85787240 gtctct-----------aataataataataa i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36422159 18 + 80974532 atctta-----------aaaaaaaaT--TAA i canFam3.chr7 I 67 C 0 e mm10.chr1 178840816 299 + 195471971 I e calJac3.chr19 14278375 0 - 49578535 C e rheMac3.chr1 16985597 157 - 229590362 I a score=8549.000000 s hg38.chr1_KI270759v1_alt 267852 5 + 425601 TAATG s panTro4.chr1 225024676 5 + 228333871 taaTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226393586 5 - 229942017 taatG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140277077 5 - 143122389 taaTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223749117 5 - 227556264 taaga i macFas5.chr1 C 0 I 18 s papAnu2.chr1 16799296 5 - 220367699 taata i papAnu2.chr1 C 0 I 58 s chlSab2.chr25 82597702 5 + 85787240 taaga i chlSab2.chr25 C 0 I 3 s calJac3.chr19 14278375 5 - 49578535 TAATG i calJac3.chr19 C 0 C 0 e mm10.chr1 178840816 299 + 195471971 I e canFam3.chr7 36422177 0 + 80974532 C e rheMac3.chr1 16985597 157 - 229590362 I a score=436350.000000 s hg38.chr1_KI270759v1_alt 267857 132 + 425601 AGTGAAGATTAGCTT-CCTCTGAAGTCAGTTCCTTGTGGATCATCTT-ATTGCTTA-TTTTT-TAACTTATTTGATATCTCACTGACCCCTCCCGA--GGCAGAAATTTGCTTTTGCTCATTGCAAACTGGCCAAGG---A s panTro4.chr1 225024681 132 + 228333871 AGTGAAGATTAGCTT-CCTCTGAAGTCAGTTCCTTGTGGATCATCTT-ATTGCTTA-TTTTT-TAACTTATTTGATATCTCACTGACCCCTCCCGA--GGCAGAAATTTGCTTTTGCTCATTGAAAACTGGCCAAGG---A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226393591 133 - 229942017 AGTGAAGATTAGCTT-CCTCTGAAGTCAGTTCCTTGTGGATCATCTTAATTGCTTA-TTTTT-TAACTTATTTGGTATCTCACTGAACCCTCCCGA--GGCAGAAGTTTGCTTTTGCTCATTGAAAATTGGCCAAGG---G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140277082 137 - 143122389 AGTGAAGATTAGCTT-CCTCTGAAGTCAGTTCCTTGTGGATCATCTTAATTGCTGATTTTTT-TAACTTATTTGATATCTCACTGACCCCTCCCGA--GGCAGAAGTTTGCTTTTGCTCATTGAAAACTGGCCAAGGGAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16985754 132 - 229590362 agTGAAGATTAGCTT-CCTCTGAAGTCAGTTCCTTGTGGATCATCTT-ATTGCTTA-TTTTT-TAAGTTATTTGATATCTCACTGACCCCTCTCGA--GGCGGAAGTTTGCTTTTGCTCATTGAAAACTGGCCAAGG---A i rheMac3.chr1 I 157 C 0 s macFas5.chr1 223749140 132 - 227556264 AGTGAAGATTAGCTT-CCTCTGAAGTCAGTTCCTTGTGGATCATCTT-ATTGCTTA-TTTTT-TAACTTATTTGATATCTCACTGACCCCTCTCGA--GGCGGAAGTTTGCTTTTGCTCATTGAAAACTGGCCAAGG---A i macFas5.chr1 I 18 C 0 s papAnu2.chr1 16799359 132 - 220367699 agagaagattaGCTT-CCTCCGAAGTCAGTTCCTTGTGGATCAtctt-attgctta-ttttt-taacttatttgatATCTCACTGACCCCTCTCGA--GGCGGAAGTTTGCTTTTGCTCATTGAAAACTGgccaagg---a i papAnu2.chr1 I 58 C 0 s chlSab2.chr25 82597710 131 + 85787240 aGAGCAGATTAGCTT-CCTCTGAAGTCAGTTCCTTGTGGATCATCTT-ATTGCTTA-CTTTT-TAACTTATTTGATATCTCACTGACCCTTCTCGA---GCAGAAGTTTGCTTTTGCTCATTGAAAACTGGCCAAGG---A i chlSab2.chr25 I 3 C 0 s calJac3.chr19 14278380 132 - 49578535 AGTGAAGATCAGTTT-CCTCTGACGTCAGTTCCTTGTGGATCATCTC-GTTGCTTA-TTTTTGTAACTTATTTGAGATCTCACTGACCCCTCCCCA--TGCAGAGGTTTGCTCTTGCTCATTGGAAACTGGCCAAGG---- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36422177 133 + 80974532 --TGAAGATTATTTTACCCCTGAATGCACTTTCTTCTGTATCATATT-ATACCTTA-CTTTT-TCTTTTATTTGATATTTCATGGACCCCTCCCTCCCTGCTCAGGTTTGTTTTTACTTATTGAAAATTGGCCAggg---a i canFam3.chr7 C 0 I 331 e mm10.chr1 178840816 299 + 195471971 I a score=436882.000000 s hg38.chr1_KI270759v1_alt 267989 155 + 425601 AAAAAAAAGAACAATTTCCTCTATAGagtagttcccccttatcctcagatagccttccaagactcccagtgaatgcctgagacctcagaaagtaccgagccctgtatgtgctgtttttCTgatctggtaaccagggcggctactgagtggttaac s panTro4.chr1 225024813 155 + 228333871 AAAAAAAAGAACAATTTCCTCTATAGagtagttccctgttatcctcagatagccttccaagactcccagtgaatgcctgagacctcagaaagtaccgagccctgtatatgctgtttttCTgatctggtaaccagggcggctactgagtggttaac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226393724 154 - 229942017 AAAAAAAAGAACGATTTCCTCTATAGagtag-tcccccttatcctcagatagccttccaagactcccaatgaatgcctgagacctcagaaagtaccgagccctgcatatgctgtttttCTgatctggtaaccagggtggctactgagtggttaac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140277219 154 - 143122389 AAAAAAAAGAACAACTTCCTCTATAGagtag-tcccccttatcctcagatagccttccaagactccctgtgaatgcctgagacctcagaaagtaccgagccctgtatatgctgtttttCTgatctggtaaccacggcggctactgagtggctaac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16985886 154 - 229590362 AAAAAAAGGAACAATTTCCTCTGTAAGgtag-tcccccttatcctcagatagccttccaagactcccagtgaatgcctgagacctcagaaggtactgagccctgtatatgctgtttttCTgatctgataaccagggtggctactgagtggcttac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223749272 154 - 227556264 AAAAAAAGGAACAATTTCCTCTGTAAGgtag-tcccccttatcctcagatagccttccaagactcccagtgaatgcctgagacctcagaaggtactgagccctgtatatgctgtttttCTgatctgataaccagggtggctactgagtggcttac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16799491 154 - 220367699 aaaaaaaggaacaatttcCTCTATAAGATAG-TCCCCCTTATCCTCAGATAGCCTTCCAAGACTCCCAGTGAATGCCTGAGACCTCAGAAGGTACTGAGCCCTGTATATGCTGTTTTTCTGATCTGATAACCAGGGTGGCTACTGAGTGGCTTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82597841 154 + 85787240 AAAAAAAGGAACAATTTCCTCTATAAGgtag-tcccccttatcctcagatagccttccaagactcccagtgaatgcctgagacctcagaaggtactgagccctgtatatgctgtttttCTgatctaataaccagggtggctactgagtggcttac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14278512 150 - 49578535 AAAGGAAAGAACAATTTCCTCTCTAGTGT-G-TCCCCCGCCTCCCTggatagccttccgaga-gcccagtggatgcctg-gactgcagaaa-tacccagccctgtacatgctgcttttCTGATCTGGTAAGCACGGTGCCTCCTGAGTGGCTAAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178840816 299 + 195471971 I e canFam3.chr7 36422310 331 + 80974532 I a score=1147313.000000 s hg38.chr1_KI270759v1_alt 268144 491 + 425601 aggcaggcagtgtagacagcaggaggtgctgggcaaaaggaagactcacatcccaggcaggacgaaatgagatggggtgaaatttcatcacactactcagaatggtgtgcagtttacaacttatgaattatttatttctggaattttccacttaatattttcagactaaggttgactgtgggtaactcaaaccttggaaaacaaaaccgtgggtaagggaagactgctTTAAGATCTGAGAATGAGGACTGACATGTTTTGGTTTGGCTGGTGGTTTCAGATCCAACCTCAGTAGTTCCTAGAGACCATTTAAtttgtttttgagatggagtctcgctctgttgtccaggctggagtg-agtggcgtgatctcggctcactgcaaactccacctcccgggttcaagcgattcttgagcctcagcctcccgagtagctgggattacaggcatgtgccaccatgccaggctaa-tttttgtatttttggtagaga s panTro4.chr1 225024968 491 + 228333871 aggcaggcagtgtagacagcaggaggtgctgggcaaaaggaagactcacatcccaggcaggacgaaatgagatggggtgaaatttcatcacactactcagaatggtgtgcagtttacaacttatgaattatttatttctggaattttccacttaatattttcagactaaggttgactgtgggtaactcaaaacttggaaaacaaaaccgtgggtaagggaagactgctTTAAGATCTGAGAATGAGGATTGACATGTTTTGGTTTGGCTGGTGGTTTCAGATCCAACCTCAGTAGTTCCTAGAGAACATTTAAtttgtttttgagatgcagtctcgctctgttgtccaggctggagtg-agtggcgtgatctcggctcactgcaaactccacctcccgggttcaagcgattctcgagcctcagccttccgagtagctgggattacaggcatgtgccaccatgccaggctaa-tttttgtatttttggtagaga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226393878 491 - 229942017 aggcaggcagtgtagacagcaggaggtgctgggcaaaaggaagactcacatcccaggcaggacgaaatgagatggggtgcaatttcatcacactactcataatggtatgcagtttacaacttatgaattatttatttctggaattttccacttaatattttcagactaaggttgactgtgggtaactcaaaccttggaaaacaaaaccatgggtaagggaagactgctgTAAGATCTGAGAATGAGGATTGACATGTTTTGGTTTGGCTGGTGGTTTCAGATCCAACCTCAGTGGTTCCTAGAGACCATTTAAtttgtttttgagatggagtctcactctgttgtccaggctggagtg-agtggcatgatctcggctcactgcaaactccacctcccgggttcaagcgattctcgagcctcagcctcccgaatagctgggattacaggcatgtgccaccacgccaggctaa-tttttgtatttttggtagaga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140277373 491 - 143122389 aggcaggcagtgtagacagcaggaggtgctgggcaaagggaagactcacatcccaggcaggacgaaatgagatggggtgcaatttcatcacactactcagaatggtgtgcagcttacaacttacgaattatttatttctggaattttccacttaatattttcagactaaggttgactgtgggtaactcaaaccttggaaaacaaagccgtgggtaagggaagactgctgTAAGATCTGAGAATGAGGATTGACATGTTTTGGTTTGGCTGGTGGTTTCAGATCCAACCTCAGTAGTTCCTAGAGACCATTTAAtttgtttttgagatggagtctcactctgttttccaggctggagtg-agtggcgtgatctcggctcactgcaaactccacctcccgggttcaagcgattctcgagcctcagcctcccgagtagctgggattacaggcatgtgccaacacgtcaggctaa-tttttgtatttttggtagtga i nomLeu3.chr5 C 0 M 100 s rheMac3.chr1 16986040 485 - 229590362 aggcagacagtgtagacagcaggaggtgctgggccaaaggaagactcatatctcaggcaggacgaaatgagatggggtgaaatttcatcacattactcagaaaggtgtgcagtttacgacttatgaattatttatttcaggaattttctacttaatattttcagactgaggttgactgtgggtaactcaaa-cttggaaaacaaaaccgtgggtaagaggagactgctgTAAGACCTGAGAATAAGGATTGGCATG-TTTGGTTTGGCTAG-----TCAGATCCAACCTCAGTAGTTCCTAGAGACCATTTAAtttgtttttgagatgcaatctcactctgttgcccaggctggagtgcaatggtgtgatctccgctcactgcaacctccacctgctgggttcaagcaattcttgagcgtcatcctcctgagtagctgggattacaggtgtgtgccaccatgccgggctaa-tttttgtatttttggtagaga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223749426 485 - 227556264 aggcagacagtgtagacagcaggaggtgctgggccaaaggaagactcatatctcaggcaggacgaaatgagatggggtgaaatttcatcacattactcagaaaggtgtgcagtttacgacttatgaattatttatttcaggaattttctacttaatattttcagactgaggttgactgtgggtaactcaaa-cttggaaaacaaaaccgtgggtaagaggagactgctgCAAGACCTGAGAATGAGGATTGGCATG-TTTGGTTTGGCTAG-----TCAGATCCAACCTCAGTAGTTCCTAGAGACCATTTAAtttgtttttgagatgcaatctcactctgttgcccaggctggagtgcaatggtgtgatctcagctcactgcaacctccacctgctgggttcaagcgattcttgagcctcagcctcctgagtagctgggattacaggtgtgtgccaccatgccgggctaa-tttttgtatttttggtagaga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16799645 485 - 220367699 AGGCAGACAGTGTAGACAGCAGGAGGTGCTGGGCCAAAGGAAGACTCATATCTCAGGCAGGACGAAATGAGATGGGGTGAAATTTCATCACATTACTCAGAAAGGTGTGCAGTTTACgacttatgaattatttatttcaggaattttctacttaatattttcagactgaggttgactgtgggtaactCAAA-CTTGGAAAACAAAACCGTGGGTAAGAGGAGACTGCTGT-AGACCTGAGAATGAGGATTGGCATG-TTTGGTTTGGCTAG-----TCAGATCCAACCTCAGTAGTTCCTAGAGaccatttaatttgtttttgagatgcaatctcactctgttgcccaggctggagtgcaatggtgtgatctcagctcactgcaacctccacctgctgggttcaagcgattcttgagcctcagcctcctgagtagctgggattacaggtgtgtgccaccacgccgggctaattttttgtatttgtggtagaga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82597995 484 + 85787240 aggcagacagtgtagacagcaggaggtgctgggccaaaggaagactcatatcccaggcaggatgaaatgagatggggtgaaatttcatcacattactcagaaaggtgtgcagtttacgacttacgaattatttatttcaggaattttctacttaatattttcagactgaggttgactgtgggtaactcaaa-cttggaaaacaaaaccgtgggtaagaggagactgctgTAAGACCTGAGAATGAGGATTGGCATG-TTTGGTTTGGCTAG-----TCAGATCCAACTTCAGTAGTTCCTAGAGACCATTTAAtttgtttttgagatgcagtctcactctgttgcccaggctggagtgcaatggtgtgatctcagctcactgcaacctccacctgctgggttcaagcaattcttgagcctcagcctcctgagtagctgggattaca-gtgtgtgccactacgccgggctaa-tttttgtatttttggtagaga i chlSab2.chr25 C 0 C 0 e mm10.chr1 178840816 299 + 195471971 I e canFam3.chr7 36422310 331 + 80974532 I e calJac3.chr19 14278662 0 - 49578535 C a score=76989.000000 s hg38.chr1_KI270759v1_alt 268635 42 + 425601 tggggtttcaccttgttggccagactggtctcgaactcctga s panTro4.chr1 225025459 42 + 228333871 tggggtttcaccttgttggccagactggtctcgaactcctga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226394369 42 - 229942017 tggggtttcaccttgttggccagactggtctcgaactcctga i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16986525 42 - 229590362 tggggtttcatcatgttggccaggctggtctcgaactcctga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223749911 42 - 227556264 tggggtttcatcatgttggccaggctggtctcgaactcctga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16800130 42 - 220367699 tggggtttcatcatgttggccaggctggtctcgaactcctga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82598479 42 + 85787240 tggggtttcatcatgttggccaggctggtctcgaatgcctga i chlSab2.chr25 C 0 C 0 e mm10.chr1 178840816 299 + 195471971 I e canFam3.chr7 36422310 331 + 80974532 I e calJac3.chr19 14278662 0 - 49578535 C e nomLeu3.chr5 140277864 100 - 143122389 M a score=166887.000000 s hg38.chr1_KI270759v1_alt 268677 70 + 425601 cctcaggtggtctgcccgcctcgacctcccaaagtgctgggattacaggtgtgagccaccatgcctgacc s panTro4.chr1 225025501 70 + 228333871 cctcaggtggtctgcccgcctcgacctcccaaagtgctgggattacaggtgtgagccaccatgcctgacc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226394411 70 - 229942017 cctcagatgatctgcccgcctcaacctcccaaagtgctgggattacaggtgtgagccaccatgcctgact i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140277964 70 - 143122389 cctcgggtggtctgcccgcctcgacctcccaaattgctgggattacaggtgtgagccactatgcctgacc i nomLeu3.chr5 M 100 C 0 s rheMac3.chr1 16986567 70 - 229590362 cctcaggtggtccacccgccttggcctcccaaagtgctgggattacaggcgtgagccgccatgcctggcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223749953 70 - 227556264 cctcaggtggtccacccgccttggcctcccaaagtgctgggattacaggcgtgagccgccatgcctggcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16800172 70 - 220367699 cctcaggtggtccacctgccttggcctcccaaagtgctgggattacaggcgtgagccgccatgcctggcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82598521 70 + 85787240 cctcaggtggtccacccgccttggcctcccaaagtgctgggattacaggcatgagccgccatgcctggcc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178840816 299 + 195471971 I e canFam3.chr7 36422310 331 + 80974532 I e calJac3.chr19 14278662 0 - 49578535 C a score=299714.000000 s hg38.chr1_KI270759v1_alt 268747 113 + 425601 GAGACCATTTAATTTGAATAAGTGCCCAAGAAGCAAAGGACTGAGCCAGGCAAGATGATCTGAGAGC----------------------------------------AGGAA------GGTGTGGCCAGGCTGGCTGAGCCATGAACAGGCTGGTTGCT s panTro4.chr1 225025571 113 + 228333871 GAGACCATTTAATTTGAATAAGTGCCCAAGAAGCAAAGGACTGAGCCAGGCAAGATGATCTGAGAGC----------------------------------------AGGAA------GGTGTGGCCAGGCTGGCTGAGCCATGAACAGGCTGGTTGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226394481 113 - 229942017 GAGACCATTTAATTTGAATAAGTGCCCAAGCAGCAAGGGACTGAGCCAGGCGAGATGATCTGAGAGC----------------------------------------AGGAA------GGTGTGGCCAGGCTGTCTGAGCCATGAACAGGCTGGTTGCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140278034 113 - 143122389 AAGACCATTTAATTTGAATAAGTGCCCAAGCAGCAAGGGACTGAGCCAGGCGAGATGATCTGAGAGC----------------------------------------AGGAA------GGTGTGGCCAGGCTGGCTGAGCCATGAACAGGCTGGTTGCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16986637 113 - 229590362 AAGACCATTTAATTTGAATAAGTGCCCAAGCATCAAGGGACTGAGCCAGGCGAGATGATCTGAGAGT----------------------------------------AGGAA------GGTGTGGCCAGGCTGACTGAGCCACGAACAGGCTGGTTACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223750023 113 - 227556264 AAGACCATTTAATTTGAATAAGTGCCCAAGCACCAAGGGACTGAGCCAGGCGAGATGATCTGAGAGT----------------------------------------AGGAA------GGTGTGGCCAGGCTGACTGAGCCACGAACAGGCTGGTTACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16800242 113 - 220367699 aagaccaTTTAATTTGAATAAGTGCCCAAGCACCAAGGGACTGAGCCAGGCGAGATGATCTGAGAGT----------------------------------------AGGAA------GGTGTGGCCAGGCTGACTGAGCCACGAACAGGCTGGTTACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82598591 113 + 85787240 AAGACCATTTAATTTGAATAAATGCCCAAGCGCCAAGGGACTGAGCCAAGCGAGATGATCTGAGAGT----------------------------------------AGGAA------GGTGTGGCCAGGCTGACTGAGCCACGAACAGGCTGGTTACT i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36422641 159 + 80974532 GAGCCCATTTAATTTGAATAAGTAACCAAACAAGGAGGGTCTGAGGCCAGGGAGATGCTCCTAGGGTGGCTGGAGAAGGACCACCCCCCCCCTCGCCCCACCCCCTGAGGAACAGTGGGGTGTGGCCTGGGAGGCCAAGGCAGGCTCTGTCCAGCTGTC i canFam3.chr7 I 331 C 0 e mm10.chr1 178840816 299 + 195471971 I e calJac3.chr19 14278662 0 - 49578535 C a score=769530.000000 s hg38.chr1_KI270759v1_alt 268860 279 + 425601 -----CCAGGGCCGGTGTCTCCCCTGGAAGGTTCTGGAGTTCAGGCTGTGTTGGAGTCCACCTTCTGCCCCTCAAG-TCCATGGCAGGGCCGTTGACTGCTGCTCTTGCCTGAGTCTCCTGGTTGCAAAGGCCAGGCAAGGCACTGCCT-----AACGTTGTGACTAACATCGTGGGTGTGACGGGGAGTCAGGGTGGCTTCTCTGTTGCCCCAAGTATGCCCTGCACATCACCA------------TCTTCCTTTTCAAAGAATGGTGAAAATAGGAATTGTG----------------CTC-----TTTAGGGAAGATTGT- s panTro4.chr1 225025684 279 + 228333871 -----CCAGGGCCGGTGTCTCCCCTGGAAGGTTCTGGAGTTCAGGCTGTGTTGGAGGCCACCTTCTGCCCCTCAAG-TCCATGGCAGGGCCGTTGACTGCTGCTCTTGCCTGAGTCTCCTGGTTGCAAAGGCCAGGCAAGGCACTGCCT-----AACGTTGTGACTAACATCGTGGGTGTGACGGGGAGTCAGGGTGGCTTCTCTGTTGCCCCAAGTATGCCCTGCACATCACCA------------TCTTCCTTTTCAAAGAATGGTGAAAACAGGAATTGTG----------------CTC-----TTTAGGGAAGATTGT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226394594 279 - 229942017 -----CCAGGGCCAGTGTCTCCCCTGGAAGGTTCTGGAGTTTAGGCTGCGTTGGAGTCCACCTTCTGCCCCTCAAG-TCCATGGCAGGGCCGTTGACTGCTGCTCTTGCCTGAGTCTCCTGGTTGCAAAGGCCAGGCAAGGCACTGCCT-----AACATCGTGACTAACATCGTGGGTGTGACGGGGAGTCAGGGTGGCTTCTCTGTTGCCCCAAGCGTGCCCTGCACATCGCCA------------TCTTCCTTTTCAAAGAATGGTGAAAATTGGAATTGTG----------------CTC-----TTTAGGGAAGATTGT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140278147 279 - 143122389 -----CCAGGGCCGGTGTCTCCCCTGGAAGGTTCTGGAGTTCAGGCTGCACTGGAGTCCACCTTCTGCCCCTCAAG-TCCATGGCAGGGCCGTTGACTGCTGCTCTTGCCTGAGTCTCCTGGTTGCAAAGGCCAGGCAAGGCACTGCCT-----AATGTCGTGACTAACATCGTGGGTGTGACGGGGAGTCAGGGTGGCTTCTCTTTTGCCCCAAGCGGGTCCTGCACATTGCCA------------TCTTCCTTTTCAAAGAATGGTGAAAATCGGAATTGTG----------------CTC-----TTTAGAGAAGATTGT- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16986750 274 - 229590362 -----TCAGGGCCGGTGTCTTCCCTGGAAGGTTCTGGAGTTCAGGCTGCATTGGAGTCCACCTTCTGCCCC------TCCATGGCAGGGCCGTTGACTGCTGCTCTTGCCTGAGTCTCCTGGTTGCAAAGGCCAGGCAAGGCACTGCCT-----AACGTTGTGACTAACGTCGTGGGTGTGATGGGGAGTCAGGGTGGCTTCTCTGTTGTCCCAAGCGTGCCCTGCACATTGCCA------------TCTTCCTTTTTAAAGAACGGTGAAAATAGGAATTGTG----------------CTC-----TTTAGGGAAGATTGT- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223750136 274 - 227556264 -----TCAGGGCCGGTGTCTTCCCTGGAAGGTTCTGGAGTTCAGGCTGCATTGGAGTCCACCTTCTGCCCC------TCCATGGCAGGGCCGTTGACTGCTGCTCTTGCCTGAGTCTCCTGGTTGCAAAGGCCAGGCAAGGCACTGCCT-----AACGTTGTGACTAACGTCGTGGGTGTGATGGGGAGTCAGGGTGGCTTCTCTGTTGTCCCAAGCGTGCCCTGCACATTGCCA------------TCTTCCTTTTCAAAGAACGGTGAAAATAGGAATTGTG----------------CTC-----TTTAGGGAAGATTGT- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16800355 274 - 220367699 -----TCAGGGCCGGTGTCTTCCCTGGAAGGTTCTGGAGTTCAGGCTGCATTGGAGTCCACCTTCTGCCCC------TCCATGGCAGGGCCGTTGACTGCTGCTCTTGCCTGAGTCTCCTGGTTGCAAAGTCCAGGCAAGGCACTGCCT-----AACGTCGTGACCAACGTCGTGGGTGTGATGGGGAGTCAGGGTGGCTTCTCTGTTGCCCCAAGCGTGCCCTGCACATCGCCA------------TCTTCCTTTTCAAAGAACGGTGAAAATAGGAATTGTG----------------CTC-----TTTAGGGAATATtgt- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82598704 274 + 85787240 -----TCAGGGCCGGTGTCTTCCCTGGAAGGTTCTGGAGTTCAGGCTGCATTGGAGTCCACCTTCTGCCCC------TCCATGGCAGGGCCGTTGACTGCTGCTCTTGCCTGAGTCTCCTGGTTGCAAAGGCCAGGCAAGGCACTGCTT-----AACGTCGTGACTAACGTCGTGGGTGTGATGGGGAGTCAGGGTGGCTTCTCTGTTGCCCCAAGCATGCCCTGCACATCGCCA------------TCTTCCTTTTCAAAGAACGGTGAAAATAGGAATTGTG----------------CTC-----TTAAGGGAAGATTGT- i chlSab2.chr25 C 0 C 0 s mm10.chr1 178841115 264 + 195471971 -----CTGGGGCTAGTGTCTCCTCTGAGAGGTTCTGGATTTCAGTGGAGGGTGGAGTCAA----TTGTTCCACTTG-TTTACAGTGGGGTCATT-AGTACTCTCCCTTCTTCTTTCT-TTGTTTGCAAAGGCTAAA-GAGGTGCCACCT--------TCGGGGGCCAGCAC----AGGATGACAGGGAGCCGAGGTGGCTCTT-------CCCAC-----CCTTACATGTTGCCAACCCCCCACTTTTTTTTTTCTTCAAAGAATGCTGAGACTAGGAATTATG----------------AT------TTTGAGAAAGATCAT- i mm10.chr1 I 299 C 0 s canFam3.chr7 36422800 284 + 80974532 CTCCATCAGGCCCCACATCTCCACACTAAGCTTCTAGAGGCCAGGCTG------------CCTTTTGCCCCTCTTGTTTTGTGGCAGGACTGCCGACT-------TTGCCTGAG-----AGGTGGCAAAGGCCAGGAGAGGTACCATCTACATCAGCGTCAACATCAGCATCATAGGTATG-CGGGGAGCACGGGG---CTCTCTATTGTCCCAAGCACGCCTTACACATTGTGA------------CCCTGCTTTTCCAAGAATGGCAAAAACAGAAATTTGGGGGGAGGAAAAATTTCCTCCCTGGTTTAGGAGGAAATTCA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14278662 0 - 49578535 C a score=6709.000000 s hg38.chr1_KI270759v1_alt 269139 3 + 425601 CTT s panTro4.chr1 225025963 3 + 228333871 CTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226394873 3 - 229942017 CTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140278426 3 - 143122389 CTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987024 3 - 229590362 CTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223750410 3 - 227556264 CTT i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82598978 3 + 85787240 CTT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178841379 1 + 195471971 --T i mm10.chr1 C 0 I 2 s canFam3.chr7 36423084 3 + 80974532 CGT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14278662 0 - 49578535 C e papAnu2.chr1 16800629 0 - 220367699 C a score=2007.000000 s hg38.chr1_KI270759v1_alt 269142 3 + 425601 TTT s panTro4.chr1 225025966 3 + 228333871 TTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226394876 3 - 229942017 TTT i ponAbe2.chr1 C 0 C 0 s mm10.chr1 178841382 3 + 195471971 TCT i mm10.chr1 I 2 I 26 s canFam3.chr7 36423087 3 + 80974532 TCT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14278662 0 - 49578535 C e rheMac3.chr1 16987027 0 - 229590362 C e chlSab2.chr25 82598981 0 + 85787240 C e papAnu2.chr1 16800629 0 - 220367699 C e macFas5.chr1 223750413 0 - 227556264 C e nomLeu3.chr5 140278429 0 - 143122389 C a score=3359.000000 s hg38.chr1_KI270759v1_alt 269145 13 + 425601 TATATCtttttct s panTro4.chr1 225025969 13 + 228333871 TATATCtttttct i panTro4.chr1 C 0 C 0 s canFam3.chr7 36423090 13 + 80974532 CATATCTTTTTCT i canFam3.chr7 C 0 I 11 e mm10.chr1 178841385 26 + 195471971 I e calJac3.chr19 14278662 0 - 49578535 C e rheMac3.chr1 16987027 0 - 229590362 C e chlSab2.chr25 82598981 0 + 85787240 C e papAnu2.chr1 16800629 0 - 220367699 C e macFas5.chr1 223750413 0 - 227556264 C e nomLeu3.chr5 140278429 0 - 143122389 C e ponAbe2.chr1 226394879 0 - 229942017 C a score=26416.000000 s hg38.chr1_KI270759v1_alt 269158 308 + 425601 tttttttttctttttttttttttttttgagacagagtcttgctctgttgcccaggctggagcgccagtggcgcgatctcggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacacccggctaatttttttgtatttttagtagagacggggtttcaccatgttagccaagatggtctccatctcctgaccttgtgatccacccgcctcggcctcccaaagtactgggattacaggctcaagccaccgcgcctgg s panTro4.chr1 225025982 299 + 228333871 ttttttttt--------ttttttttttgagacggagtctcgctctgtcgcccaggctggagagc-agtggcgcgatctcggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacgcctggctaatttttttgtatttttagtagagacggggtttcaccatgttagccaagatggtctccatctcctgacctcgtgatccgcccgcctcggcctcccaaagtactgggattacaggctcaagccaccgcgcctgg i panTro4.chr1 C 0 C 0 e mm10.chr1 178841385 26 + 195471971 I e canFam3.chr7 36423103 11 + 80974532 I e calJac3.chr19 14278662 0 - 49578535 C e rheMac3.chr1 16987027 0 - 229590362 C e chlSab2.chr25 82598981 0 + 85787240 C e papAnu2.chr1 16800629 0 - 220367699 C e macFas5.chr1 223750413 0 - 227556264 C e nomLeu3.chr5 140278429 0 - 143122389 C e ponAbe2.chr1 226394879 0 - 229942017 C a score=338.000000 s hg38.chr1_KI270759v1_alt 269466 2 + 425601 cc s panTro4.chr1 225026281 2 + 228333871 cc i panTro4.chr1 C 0 C 0 s papAnu2.chr1 16800629 2 - 220367699 ct i papAnu2.chr1 C 0 C 0 e mm10.chr1 178841385 26 + 195471971 I e canFam3.chr7 36423103 11 + 80974532 I e calJac3.chr19 14278662 0 - 49578535 C e rheMac3.chr1 16987027 0 - 229590362 C e chlSab2.chr25 82598981 0 + 85787240 C e macFas5.chr1 223750413 0 - 227556264 C e nomLeu3.chr5 140278429 0 - 143122389 C e ponAbe2.chr1 226394879 0 - 229942017 C a score=9555.000000 s hg38.chr1_KI270759v1_alt 269468 5 + 425601 TTTTA s panTro4.chr1 225026283 5 + 228333871 TTTTA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140278429 5 - 143122389 TTTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987027 5 - 229590362 TTTTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223750413 5 - 227556264 TTTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16800631 5 - 220367699 tttta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82598981 5 + 85787240 TTTTA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178841385 26 + 195471971 I e canFam3.chr7 36423103 11 + 80974532 I e calJac3.chr19 14278662 0 - 49578535 C e ponAbe2.chr1 226394879 0 - 229942017 C a score=493945.000000 s hg38.chr1_KI270759v1_alt 269473 207 + 425601 TATCTTTTTCAAAGAAAAAGGTAggctgggggcggtggctcacgcctgtaatcccagcactttgggaggcagaggcgagtggatcacctgatgtcaggagttcgagaccagcctggtcaacatggtgaaacctcatctctactaaaaatacaaaaattagccaggcatagtggtgcacacctgtagtctcagctactcgggaggctg s panTro4.chr1 225026288 207 + 228333871 TATCTTTTTCAAAGAAAAAGGTAggctgggggcggtggctcacgcctgtaatcccagcactttgggaggcagaggcgagtggatcacctgatgtcaggagttcgagaccagcctggtcaacatggtgaaacctcatctctactaaaaatacaaaaattagccaggcatagtggtgcacacctgtagtctcagctactcgggaggctg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226394879 207 - 229942017 TATCTTTTTCAAAGAAAAAGGTAggctgggggcggtggctcatgcctgtaatcccagcactttgggaggcggaggcgagtggatcacctgatgtcaggagttcgagaccagcctggccaacatggtgaaacctcatctctactaaaaatacaaaaattagccaggcatagtggtgcacacctgtagtctcagctactcaggaggctg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140278434 207 - 143122389 TATCTTTTTCAAAGAAAAAGGTAggctgggggcagtggctcacgcctgtaatcccagcactttgggaggtggaggcgagtggatcacctgatgtcaggagttcgagaccagcctggccaacatggtgaaacctcatctctactaaaaatacaaaaattagccacgcatagtggtgcacacctgtagtctcagctactcgggaggctg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987032 207 - 229590362 TAACTTTTTCAAAGAAAATGGTAggctgggggccatggctcacgcctgtagccccagcactttgggaggccaaggcggggggaccacctaaggtcaggagttcgagatcagcctggccaacatggtgcaaccccgtctctactaaaaatacaaaaattagccaggcatagaagtgcacgcctgtagtctcagctactcgggaggctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223750418 207 - 227556264 TAACTTTTTCAAAGAAAATGGTAggctgggggccatggctcacgcctgtaaccccagcactttgggaggccaaggcgggtggaccacctaaggtcaggagttcgagatcagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcatagcagtgcacgcctgtagtctcagctactcgggaggctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16800636 207 - 220367699 taactttttcaaagaaaatggtAGGCTGGgggccatggctcacgcctgtaaccccagcactttgggaggccaaggcgggtggactacctaaggtcaggagttcgagatcagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcatagcagtgcatgcctgtagtctcagctactcgggaggctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82598986 207 + 85787240 TAACTTTCTCAAAGAAAATGGTAggctgggggccatggctcacgcctgtaaccccagcactttgggaggccaaggcgggtggaccacctgaggtcaggagttcaagatcagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatagcagtgcacgcctgtggtctcagctacttgggacgctg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178841385 26 + 195471971 I e canFam3.chr7 36423103 11 + 80974532 I e calJac3.chr19 14278662 0 - 49578535 C a score=311887.000000 s hg38.chr1_KI270759v1_alt 269680 113 + 425601 aggcaggagaattgtttgaacccgggaggcagaggttgcagtaagctgagatcgtgccactatactccagcctgggcaacagtgtgggactccatctc---------aaaaaaaaaatgtag s panTro4.chr1 225026495 112 + 228333871 aggcaggagaattgtttgaacccgggaggcagaggttgcagtaagctgagatcgtgccactatactccagcctgggcaacagtgtgggactccatctc---------aaaaaaaaa-tgtag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226395086 113 - 229942017 aggcaggagaattgtttgaacctgggaggcagaggttgcagtgagctgagatcatgccactatactccagcctgggcaacggtgtgagactccatctc---------aaaaaagaaatgtag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140278641 112 - 143122389 aggcaggagaattgtttgaacccgggaggcagaggttgcagtaagctgagatcgtgccactatactccagcctgggcaacagtgtgagactccatctc---------aaaaacaaa-tgtag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987239 115 - 229590362 aggcaggagaattgtttgaaggcaggaggcggaggttgcagtgagctgagatcgtgccactatactcaagcctgggcaacagagtgagactccatctc-------aaaaaaaaaaaatgtag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223750625 114 - 227556264 aggcaggagaattgtttgaaggcaggaggcggaggttgcagtgagctgagatcgtgccactatactccagcctgggcaacagagtgagactccatctc--------aaaaaaaaaaatgtag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16800843 122 - 220367699 aggcaggagaattgtttgaacgcaggaggcggaggttgcagtgagctgagatcgtgccactatactccagcctgggcaacagagtgagactccatctcaaaaaaaaaaaaaaaaaaaagtag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82599193 114 + 85787240 aggcaggagaattgtttgaacgcaggaggcggaggttgcagtgagctgagatcgtgccactatactccagcctgggcaacagagtgagactccatctc--------aaaaaaaaaaatgtag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14278662 107 - 49578535 aggcaggagaatcatttgaaaccaggaggcagaggttgcagtgagctgagatagtgccactgaactccagcctagggaacag---------ccatctc------aaaaaaaaaaaaaagaaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178841385 26 + 195471971 I e canFam3.chr7 36423103 11 + 80974532 I a score=34188.000000 s hg38.chr1_KI270759v1_alt 269793 10 + 425601 aaaaataaaa s panTro4.chr1 225026607 10 + 228333871 aaaaataaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226395199 10 - 229942017 aaaaataaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140278753 10 - 143122389 caaaacaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987354 10 - 229590362 aaaaataaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223750739 10 - 227556264 aaaaataaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16800965 10 - 220367699 aaaaataaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82599307 10 + 85787240 aaaaataaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14278769 10 - 49578535 gaaaagaaaa i calJac3.chr19 C 0 C 0 s canFam3.chr7 36423114 10 + 80974532 AAAGATAAAA i canFam3.chr7 I 11 C 0 e mm10.chr1 178841385 26 + 195471971 I a score=769405.000000 s hg38.chr1_KI270759v1_alt 269803 220 + 425601 acaaTCATCTATTCATGGCTAGGTAGAGGTCA---GATTTCACTCACTGACCTGTTTTTAGATTTTCCTTCGATATTCCAACTCTTAGATATGTCAGGTTGCTGGAGTTGCTGACTGCACTAACTTCTGCATTCTCCAACTTTCCCCTCAGAGAGTGGC-T-TGTCTAAATCACCCAAA--TTACCATGT-------------GGGTGAGAATGTTGGGGAAATG------AAGATTTAAAATCCA s panTro4.chr1 225026617 211 + 228333871 acaaTCATCTATTCATGGCTAGGTAGAGGTCA---GATTTCACTCACTGACCTGTTTTTAGATTTTCCTTCGATATTCCAACTCTTAGATATGTCAGGTTGCTG---------ACTGCACTAACTTCTGCATTCTCCAACTTTCCCCTCAGAGAGTGGC-T-TGTCCAAATCACCCAAA--TTACCATGT-------------GGGTGAGAATGTTGGGGAAATG------AGGATTTAAAATCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226395209 222 - 229942017 acaaTCATCTATTCATGGCTAGGTAGAGGTCA---GATTTCATTCATTGACCTGTTTTTAGATTTTCCCTTGATATTCCAACTCTTAGATATGTCAGGTTGCTGGAGTTGCTGACTGCACTAACTTCTGCATTCTCCAACTTTCCCCTCAGAGAGTGGC-T-TGTCCAAATCACAGGGACTTTACCGTGT-------------GGGTGAGAATGTTGGGGAAATG------AAGATTTAAAATCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140278763 222 - 143122389 acaaTCATCTATTCATGGCTAGGTAGAGGTCA---GATTTCACTCACTGACCTGTTTTTAGATTTTCCTTTGATATCCCAACTCTTAGATATGTCAGGTTGCTGGAGTTGCTGACTGCACTAACTTCTGCATTCTCCAACTTTCCCCTCAGAGAGTGGC-T-TGTCCAAATCACAGGGACTTTACGGTGT-------------GGGTGAGAATGTTGGGGAAATG------AAGATTTAAAATTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987364 222 - 229590362 acaaTCATTTATTCATGGCTAGGTAGAGGTTG---GATTTGACTCACTGACCTGTTTTTAGATTTTCCTTCGATATTCCAACTCTTAGATATATCAGGTTGCTGGAGTTGCTGACTGCACTAACTTCTGCATTCTCCAACTTTCACCTCAGAGAGTGGC-T-TGTCCAAATCACAGGGACTTTGCCGTGT-------------GGGTGAGAATGTTGAGGAAATG------AAGATTCAAAATCCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223750749 222 - 227556264 acaaTCATTTATTCATGGCTAGGTAGAGGTCG---GATTTGACTCACTGACCTGTTTTTAGATTTTCCTTCGATATTCCAACTCTTAGATATATCAGGTTGCTGGAGTTGCTGACTGCACTAACTTCTGCATTCTCCAACTTTCACCTCAGAGAGTGGC-T-TGTCCAAATCACAGGGACTTTGCCGTGT-------------GGGTGAGAATGTTGAGGAAATG------AAGATTCAAAATCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16800975 222 - 220367699 acaatcatttaTTCATGGCTAGGTAGAGGTTG---GATTTGACTCACTGACCTGTTTTTAGATTTTCCTTTGATATTCCAACTCTTAGATATATCAGGTTGCTGGAGTTGCTGACTGCACTAACTTCTGCATTCTCCAACTTTCACCTCAGAGAGTGGC-T-TGTCCAAATCACAGGGACTTTGCCATGT-------------GGGTGAGAATGTTGAGGAAATG------AAGATTCAAAATCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82599317 220 + 85787240 acaaTCATTTATTCATGGCTAGGTAGAGGTTG---GATTTGACTCACTGACCTGTTTTTAGATTTTCCTTTGATATTCCAACTC--AGATATATCAGGTTGCTGGAGTTGCTGACTGCACTAACTTCTGCATTCTCCAACTTTCACCTCAGAGAGTGGC-T-TGTCCAAATCACAGGGACTTTGCCATGT-------------GGGTGAGAATGTTGAGGAAATG------AAGATTCAAAATCCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14278779 224 - 49578535 aCAGTCATCTGTTCATGGCTAGATAAAGGTCAGATGATTTTACTCACTGACCTGGTTTTGGATTTTCCTTTGACAGTCCAACTCTTGGATATGTCAGGTTGCTGGAGTTGGTGACTGCACTAA-TTCTGGATTCTCCACCTTTCCCCTCGGGGAACGGC-T-TGTCCAAATCACAGGGACTTAACCGCAT-------------GGCTGAGAATGTTGGGGAAATG------AAGATTTAAAATCCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178841411 204 + 195471971 ACAATTTCCTGTGCATGCTTAGATGGAAATTA---GATTTTGTTCAGTGCCTTGATACTGGCTTTTCTGTTTACATTACAACTCCCAGATGTGTCAGGTTGCTGG-GTTGTTGACTGC------------ATCCTCTAAC--TCCTCTCAGAGAGTGGAGC-TTTTCAAGGCATGGAGACTTGCTCATGT-------------GAGCAATGATGT----GACAAG------AAGACTTGAAATTCA i mm10.chr1 I 26 C 0 s canFam3.chr7 36423124 230 + 80974532 GCAATAATCTGCTGGTGGTCCAGAGGAAGTTA---GATTTTGCTC-----CCTGGTTTTGGGTGCTCTCTTGGCACTCCAGCCCCTAGACAAGTCAGGATCCAGGAAGTGGTGACTGCACTAGTTTCTGCATTGTCTGTCCCTC-------AGAGTGAT-TCTGTTCAAATCACAGAGACATTAGGGGGTGTTAGGATTAGGGGGGTGAGGGTGTTGGGGAAATGTTTAAAACAGTTTAAAATCCG i canFam3.chr7 C 0 I 231 a score=504388.000000 s hg38.chr1_KI270759v1_alt 270023 174 + 425601 CAATATTATTAGTGCTGTCAATATCATAATATCATAAATGTCCATACGAGGAAAGGAGACCTTGGCAGAGGCTACCTTTTCTATCTGTTT-------------------------------------------------TGTGTGTGTGTGT----------GACATTCTTCATGAATGACT--TCTTGAACTATGAAAATGAGGCAA-------------CTGTGGCCTGAACTCTC-TCATTTGCCT s panTro4.chr1 225026828 174 + 228333871 CAATATTATTAGTGCTGTCAATATCATAATATCATAAATGTCCATACGAGGAAAGGAGACCTTGGCAGAGGCTACCTTTTCTATCTGTTT-------------------------------------------------TGTGTGTGTGTGT----------GACATTCTTCATGAATGACT--TCTTGAACTATGAAAATGAGGCAA-------------CTGTGGCCTGAACTCTC-TCATTTGCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226395431 167 - 229942017 CAATATTATTAGTGCTGTCAATATC---ATATCATAAATGTCCCTAGGAGGAAAGGAGACCTTGGCAGAGGCTACCTTTTCTA--TGTTT---------------------------------------------------TGTGTGTGTGT----------GACATTCTTCATGAATGACT--TCTTGAACTATGAAAATGAGACAG-------------CTGTGGTCTGAATGCTC-TCATTTGCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140278985 173 - 143122389 CAATATTATTAGTGCTGTCAATATCATAATATCATAAATGTCCCTAGAAGGAAAGGAGACCTTGGCAGAGGCTACCTTTTCTATCTGTTT---------------------------------------------------TGTGTGTGTGT----------GACATTCTTCATGAATGACT--TCTTGAACTATGAAAATGAGACAA-------------CTGTGGCCTGAACTCTCTTCATTTGCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987586 189 - 229590362 CAATATTATTAGTGCTGTCAATATCATAATATCATAAATGTCCTTCGGAGGAAAGCAGACGTTGGCGGAGACTACCTTTTCTATTAATTT-----------------------------------------------TGTGTGTGTGTGTGT----------GACATTGTTCATGAATGGCT--TGTTGAACTATGAAAATGAGACAATTGTCAGTGGAGTTTGTGGCCTGAACTCTC-TCATTTGCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223750971 189 - 227556264 CAATATTATTAGTGCTGTCAATATCATAATATCATAAATGTCCTTCGGAGGAAAGCAGACGTTGGCGGAGACTACCTTTTCTATTAATTT-----------------------------------------------TGTGTGTGTGTGTGT----------GACATTGTTCATGAATGGCT--TGTTGAACTATGAAAATGAGACAATTGTCAGTGGAGTTTGTGGCCTGAACTCTC-TCATTTGCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16801197 206 - 220367699 CAATATTATTAGTGCTGTCAATATCATAATATCATAAATGTCCTTCGGAGGAAAGCAGACGTTGGCGGAG---ACCTTTTCtatcaattt------------------------tgtgtgtgtg---tgtgtgtgtgtgtgtgtgtgtgtgt----------gacattctTCATGAATGACT--TGTTGAACTATGAAAATGAGACAATTGTCAGTGGAGTTTGTGGCCTGAACTCTC-TCATTTGCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82599537 219 + 85787240 CAATATTATTAGTGCTGTCAATATCGTAATATCATAAATGTCCTTCGGAGGAAAGCAGACGTTGGCGGAGACTACCTTTTCTATCAATTT------------------------tgtgtgtgtg---tgtgtgtgtgtgtgtgtgtgtgtgtgAGAGAGAGAGATATTCTTCATGAATGACT--TGTTGAACTATGAAAATGAGACAATTGTCAGTGGAGTTTGTGGCCTGAACACTC-TCATTTGCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14279003 178 - 49578535 CAATATTATTAGTGCTGTCAGTATCATAATCTCTTAAGCGTTCCTGGGAGGAGAGCAGACCTTGATGGTGGCCACCTTTTCTATCAGTTC---------------------------------------------------TGTGTGCGTGT----------GACATTCTCCGTGAATGACT--TGTTGAATTATGAAAATGAGATAATTGTCAGTGGAG-TTGTGGCCTGAACACTC-C------CCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178841615 231 + 195471971 TAACATTGCCACCA-TGTTAACA--AAAATTTAATAAATTTTCATAGGGAGAAACTAGGCATGAATAGAGGTTATCTTTTTTTCTCATTTTCTTTTGCTTTCTTTCTTCCTTtctgtctgtctgtcttctgtttgtttgtttgtTTCTGTAT----------GGCATTCTTGATGAGTGAATTATGTTGACCTACCAGACCATGTTGA----CCATAGAGTGTGCAGGCTAAACTTTC-TCCTGTGCCT i mm10.chr1 C 0 I 151 s canFam3.chr7 36423585 175 + 80974532 TAACATTATTAGCACTATCAAGACAATAATTTAAGAATTGTCCT--GAAGGAAACCAGTCATTGACAGAGGCCACCTTCTCAATCCATTT--------------------------------------------------TTTTGTGTGTGT----------GACTTTTCCCCAGAATGACTTTTGTCGAATTATGAAAATGAGTGGG---------GAGTCCATGGCTTGAACGGTT-TCGTGCCC-- i canFam3.chr7 I 231 C 0 a score=49957.000000 s hg38.chr1_KI270759v1_alt 270197 15 + 425601 -CCTCCCCTTCCTGGC s panTro4.chr1 225027002 15 + 228333871 -CCTCCCCTTCCTGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226395598 15 - 229942017 -CCTCCCCTTCCTGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140279158 15 - 143122389 -CCTCCCCTTCCTGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987775 15 - 229590362 -CCTCCCCTTCCTGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223751160 15 - 227556264 -CCTCCCCTTCCTGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16801403 15 - 220367699 -CCTCCCCTTCCTGAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82599756 15 + 85787240 -CCTCCCCTTCCTGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14279181 15 - 49578535 -CTTCCCCCTCCTGGC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36423760 16 + 80974532 TATCCCTGTGCTTGGC i canFam3.chr7 C 0 I 59 e mm10.chr1 178841846 151 + 195471971 I a score=125410.000000 s hg38.chr1_KI270759v1_alt 270212 43 + 425601 ATTTACTTAAGACATTTCCTGATGCTTCCC-GGGGGTGTTTCAT s panTro4.chr1 225027017 43 + 228333871 ATTTACTTAAGACATTTCCTGATGCTTCCC-GGGGGTGTTTCAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226395613 43 - 229942017 ATTTACTTAAGCCATTTCCTGATGCTTCCC-AGGTGTGTTTCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140279173 44 - 143122389 ATTTACTTAAGCCATTTCCTGATGCTTCCCTGGGGGTGTTTCAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987790 43 - 229590362 ATTTATTTAAGCCATTTCCTGATGCTTCCT-GGGGGTGTTTCAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223751175 43 - 227556264 ATTTATTTAAGCCATTTCCTGATGCTTCCT-GGGGGTGTTTCAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16801418 43 - 220367699 ATTTATTTAAGCCATTTCCTGATGCTTCCT-GGGGGTGTTTCAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82599771 43 + 85787240 ATTTATTTAAGCCATTTCCTGATGCTTCCT-GGGGGTGTTTCAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14279196 42 - 49578535 ATTTATTTAAGCCATTTCCGGATGCTTCCT--GGGGTGTTTCCT i calJac3.chr19 C 0 C 0 e mm10.chr1 178841846 151 + 195471971 I e canFam3.chr7 36423776 59 + 80974532 I a score=4500.000000 s hg38.chr1_KI270759v1_alt 270255 1 + 425601 G s panTro4.chr1 225027060 1 + 228333871 G i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226395656 1 - 229942017 G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140279217 1 - 143122389 G i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987833 1 - 229590362 G i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223751218 1 - 227556264 G i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16801461 1 - 220367699 G i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82599814 1 + 85787240 G i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14279238 1 - 49578535 G i calJac3.chr19 C 0 C 0 s canFam3.chr7 36423835 1 + 80974532 G i canFam3.chr7 I 59 C 0 e mm10.chr1 178841846 151 + 195471971 I a score=663762.000000 s hg38.chr1_KI270759v1_alt 270256 218 + 425601 CTGGTGT--CTA---AGCCAGAGATCACACCTCCC---ACC-----CACCATGC---------CTGCA---CCTCCA-----CTCCTGCA-----------------------AAGGTTTTTAGAGTCAGGGTCCCTATCAGTGTCTAAG-----------CATCAGGCTCTTCAGACCCTGA----------------------------------CCTTTGAAAAGTCCAAATGGCTCTTGAGTGCCCCATTTTCTCCCAATCTGAAAACTGTAAGAATG-------------------------------------AAATATAAC-AATTAAGCCTCAGAGGATCACAAGC s panTro4.chr1 225027061 218 + 228333871 CTGGTGT--CTA---AGCCAGAGATCACACCTCCC---ACC-----CACCATGC---------CTGCA---CCTCCA-----CTCCTGCA-----------------------AAGGTTTTTAGAGTCAGGGTCCCTATCAGTGTCTAAG-----------CATCAGGCTCTTCAGACCCTGA----------------------------------CCTTTGAAAAGTCCAAATGGCTCTTGAGTGCCCCATTTTCTCCCAATCTGAAAATTGTAAGAATG-------------------------------------AAATATAAC-AATTAAGCCTCAGAGGATCACAAGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226395657 218 - 229942017 CTGGTGT--CTA---AGCCAGAGATCACACCTCCC---ACC-----CACCATGC---------CTGCA---CCTCCA-----CTCCTGCA-----------------------AAGGTTTTTAGAGTCAGGGTCCCAAACAGCGTCTAAG-----------CATCAGCCTCTTCAGACCCTGA----------------------------------CCTTTGAAAAGTCCAACTGGCTCTTGAGTGCCCCATTTTCTCCCAATCTGAAAATTGTAAGAATG-------------------------------------AAATATAAC-AATTAAGCCTCAGAGGATCACACAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140279218 214 - 143122389 CTGGTGT--CTA---AGCCAGAGATCACACCTCCC---ACC-----CACCATGC---------CTGCA---CCTCCA-----CTCCTGCA-----------------------AAGGTTTTTAGAGTCAGGGTCCCTACCAGCGTCTAAG-----------CATCAGGCTTTTCAGACCCTGA----------------------------------CCTTTCAAAAGTCCAACTGGCTCTTGAGTGCCCCATTTTCTCCCAATCTGAAAATTGTAAGAATG-------------------------------------AAATCTAAC-----AAGCCTCAGAGGATCACAAGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16987834 218 - 229590362 CTGGTGT--CTA---AGCCAGAGATCACACCCCCC---ACC-----CACCATGC---------CTGCA---TCTCCA-----CTCTGGCA-----------------------GAGGTGTTGAGAGTCAGGGTCCCTCCCAGTGTCTAAG-----------CGTCAGGCTCTTCAGAGCCTGA----------------------------------CCTTTGAAAAGTCCAACTGGCTCTTGAGTGTCCCATTTTCTCCCAACCTGAAAACTGTAAGAATG-------------------------------------AAATATAAC-AATTAAGCCTCAGAGGATCGCAAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223751219 218 - 227556264 CTGGTGT--CTA---AGCCAGAGATCACACCCCCC---ACC-----CACCATGC---------CTGCA---CCTCCA-----CTCCGGCA-----------------------GAGGTGTTGAGAGTCAGGGTCCCTCCCAGTGTCTAAG-----------CGTCAGGCTCTTCAGAGCCTGA----------------------------------CCTTTGAAAAGTCCAACTGGCTCTTGAGTGTCCCATTTTCTCCCAACCTGAAAATTGTAAGAATG-------------------------------------AAATATAAC-AATTAAGCCTCAGAGGATCGCAAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16801462 218 - 220367699 CTGGTGT--CTA---AGCCAGAGACCACACCCCCC---ACC-----CGCCATGC---------CTGCA---CCTCCA-----CTCCGGCA-----------------------GAGGTGTTGAGAGTCAGGGTCCCTCCCAGCGTCTAAG-----------CGTCAGGCTCTTCAGACCCTGA----------------------------------CCTTTGAAAAGTCCAACTGGCTCTTGAGTGTCCCATTTTCTCCCAACCTGAAAATTGTAAGAATG-------------------------------------AAATATAAC-AATTAAGCCTCAGAGGATCGCAAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82599815 217 + 85787240 CTGGTGT--CTA---AGCCAGAGATCACACCCCCC---ACC-----CACCATGC---------CTGCA---CCTCCA-----CTCCTGCA-----------------------GAGGTGTTTAGAGTCAGGGTCCCTACCAGTGTCTAAG-----------CGTCAGGCTCTTCAGACCCTGA----------------------------------CCTTTGAAAAGTCCAACTGGCTCGTGAGTGTCTCATTTTCTCCCAACCTGAAAATTGTAAGAATG--------------------------------------AATATAAC-AATTAAGCCTCAGAGGATCGCAAGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14279239 216 - 49578535 CTGGCAT--CTA---AGCCAGAGATCACACCTTCC---CCC-----CGCCATGC---------CTGCA---CCTCCA------TCCTGCA-----------------------GAGGTGTCCAGAGTCCGGATCCTCACCAGCCTCTAAG-----------CGTCAGGCTCTTCAGACCCtga----------------------------------cctctgaaaagtccagctggctctct-gtgccccactttctcccaatctgaaaatggtgagaatg-------------------------------------aAATATAAA-AATGAAACCTCAGAGGACCGCAAGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178841997 340 + 195471971 CTGTTGT--CTAAGGAGCCAAGACTTCCACAACCCAAGACC-----CTTCAAACCCTGAGATTCTGCAAACCCTGAG-----ACCCTGCAAACCCTGAGACCCTTCAAACCCTGAGATTCTGCAAACCCTGAGACCCTGCAAACCCTGAGACCCTGCAAACCCTGAGACCCTGCAAACCCTGAGACCCTTTAAACCTTATAATCCTCCAAGCCCTGGCATTTGAAAAGTCAGATCATCCCCTCTGTGCCCCA-TTTCCCCCAATCGGACAACtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAATATGAA-AATGAAACTCTGGAGATTCTTAAGC i mm10.chr1 I 151 I 163 s canFam3.chr7 36423836 207 + 80974532 CAGGTGCCACGA---AGCCAGGGCACA-ACATGCC---AGTCGAGGCAGCAGTC---------CTACA---CGTCCAGCCACCTCCCACA----------------------------CCATGGACTCAGGGTTGctgtcacctcctaag-------------------------agccctga----------------------------------ccttggagaagccttg-tgactctcatgtgccccacttttccccaatctgaaaatta-gagaatg-------------------------------------aactaTAAAAAAATCAGCCT--GAGACCTACAAGC i canFam3.chr7 C 0 C 0 a score=2650178.000000 s hg38.chr1_KI270759v1_alt 270474 774 + 425601 GCAGGTGATC-CT-----------CATGAGCCCAGACTG--------------------ATATTTCTAAATTATCTAGATCTTCCTTGAACATAGACTCCAGAGTTACCGGGACGCAGCGTTCCCATTCCACTGGGCAGCCATCTATACGTGAAGTGTCATTGTTGGTGGTTTGGGAGTTTTATTTT-CCCTTTCATAACACGTCTC---CTGTCTCCTCAGCTCCCCCAGAACTCCCTGTAATCATATTTGCTATCAGTTGTGTTTGTGGAGGTGT-------AGTGAATTTTTCAGGG--------------------------------------------------ATGAATA------------------------------------------------------CCAATGCTGAGACCCTCCAAGAAGACCTGTGAGGTCAGCCTCTGTCAGCGTGACAGCCCAGTGGGAGGGGG-CCCCAAGCTACACAGCAGGAGATGATTGTCACACGTCCTGGTGAGAG-----AGCCTGCTCACCAGCTCTGGACCTGCACTCCGTGTGCCTGGCCAGTAGATAGGTTTCCCTGGTG-TTCCCCAGGCCTTTTCTGCTTCATGACATTGATTATATAGCTAGCATTTCATTTCAGTAGGGCTTGGGAAAGGGGGTTCTTTATTGCAGCTCCTGTAAAAA-CCCATTTCCACACGAATCACCTCTGGCC-TTTTTCTGTCTGGCACATTGTTTAGAC-AGGAGGGGTTTGTGTGTATCACTTCCCTCCAGCCTCTCCTAAGTGGAAGCCTGGGATTTGGAAATTGGGA-TTTTTTTCCTTCTCTCTAAATGAATGCCTTGTTGG--ATACCTTGTTGATAAAATGCCATTTCTCACATCTTTATAGCTTAAGGGGCTACCTTAG-CCACAAGGC- s panTro4.chr1 225027279 774 + 228333871 GCAGGTGATC-CT-----------CATGAGCCCAGACTG--------------------ATATTTCTAAATTATCTAGATCTTCCTTGAACATAGACTCCAGAGTTACCGGGACGCAGCGTTCCCATTCCACTGGGCAGCCATCTATACGTGAAGTGTCATTGTTGGTGGTTTGGGAGTTTTATTTT-CCCTTTCATAACACGTCTC---CTGTCTCCTCAGCTCCCCCAGAACTCCCTGTAATCATATTTGCCATCAGTTGTGTTTGTGGAGGTGT-------AGTGAATTTTTCAGGG--------------------------------------------------ATGAATA------------------------------------------------------CCAATGCTGAGACCCTCCAAGAAGACCTGTGAGGTCAGCCTCTGTCAGCGTGACAGCCCAGTGGGAGGGGG-CCCCAAGCTACACAGCAGGAGATGATTGTCACACGTCCTGGTGAGAG-----AGCCTGCTCACGAGCTCTGGACCTGCACTCCGTGTGCCTGGCCAGTAGATAGGTTTCCCTGGTG-TTCCCCAGGCCTTTTCTGCTTCATGACATTGATTATATAGCTAGCATTTCATTTCAGTAGGGCTTGGGAAAGGGGGTTCTTTATTGCAGCTCCTGTAAAAA-CCCATTTCCACACGAATCACCTCTGGCC-TTTTTCTGTCTGGCACATTGTTTAGAC-AGGAGGGGTTTGTGTGTATCCCTTCCCTCCAGCCTCTCCTAAGTGGAAGCCTGGGATTTGGAAATTGGGA-TTTTTTTCCTTCTCTCTAAATGAATGCCTTGTTGG--ATACCTTGTTGATAAAATGCCATTTCTCACATCTTTATAGCTTACGGGGCTACCTTAG-CCACAAGGC- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226395875 773 - 229942017 ACAGGTGATCACT-----------CATGAGCCCAGACTG--------------------ATATTTCTAAATTATCTAGATCCTCCTTGAACATAGACTCCAGAGTTACCGGAACGCAGCGTTCCCATTCCACTGCGCGGCCATCTATACGTGAAGTGTCATTGTTGGTGGTTTGGGAGTTTTATTTT-CCCTTTGATAACACTTCTC---CTGTCTCCTCAGCTGTCCCAGAACTCCCTGTAATCATATTTGCCATCGGTTGTGTTTGTGGAGGTGC-------AGTGAGTTTTTTAGGG--------------------------------------------------ATGAATA------------------------------------------------------CCAATGCTGAGACCCTCCAAGAAGACCTGTGAGGTCAGCCTCTGTCAGCGTGACAGCCCAGTGGGAGGGGG-TCCCAAGCTACACAGCAGGAGATGATTGTCACACGTCCTGGTGGGAG-----AGCCTGCTCACCAGCTCTGGACCTGCACTCCATGTGCCTGGCCAGTAGACAGGTTTCCCTGGTG-TTCCCCAGGCCTTTTCTGCTTCATGACATTGATGATATAGCTAGCATTTCATTTCAGTAGGGCTTGGGAAAGGGAGTTCTTTATTGCAGCTCCTCTAAGAA-CCCATTTCCACATGAATCACCTCCGGCC-TTTTTCTGTCTGGCACATTGTTTAGAC-AAGAGGGGTTTGTGTGTATCCCTTCCCACCAGCATCTCCTAAGTGGAAGCCTGGGATTTGGAAATTGGGA-TTTTTTTCC-TCTCTCTAAACGAATGCCTTGTTAG--ATACCTTGTTGATAAAATGCCATTTCTCACATC-TTATAGCTTAAGGGGCTACCTTAG-ACACAAGGC- i ponAbe2.chr1 C 0 I 507 s nomLeu3.chr5 140279432 772 - 143122389 GCAGGTGATCACT-----------CATGAGCCCAGACTG--------------------ATATTTCCAAATTATCTAGATCTTCCTTGAACATAGACTCCAGAGTTACCGAGACGCAGCGTTCCCATTCCACTGGGCAGCCATCTATACGTGAAGTGTCGTTGT---TGGTTTGGGAGTTTTATTTT-CCCTTTCATAACACTTCTC---CTGTCTCCCCAGCTCCCCCAGAACTCCCTGTAATCATATTTGCCATCAGTTGTGTTTGTGGAGGTGT-------AGTGAGTTTTTTAGGG--------------------------------------------------ATGAATA------------------------------------------------------CCAACGCTGAGACCATCCAAGAAGACCTGTGAGGTCAGCCTTTGTCAGCGTGACAGCCCAGTGGGAGGGGG-CCCCAAGCTACACAGCAGGAGATGATTGTCACACGTCCTGGTGGGAG-----AGCCTGCTCACCAGCTCTGGACCTGCATTCCGTGTGCCTGGCCAGTAGACAGGTTTCCCTGGTG-TTCCCCAGGCCTTTTCTGCTTCATGACATTGACTATATAGCTAGCATTTCATTTCAGTAGGGCTTGGGAAAGGGGGTTCTTTATTGCAGCTCCTCTAAAAA-CCCATTTCCACATGAATCACCTCTGGCC-TTTTTCTGTCTGGCACGTTGTTTAGAC-AAGAGGGGTTTGTGTGTATCCCTTCCCACCAGCCTTTCCTAAGTGGAAGCCTGGGATTTGGAAATTGGGA-TTTTTTTCCTTCTCTCTAAATGAATGCCTTGTTGG--AGACCTTGTTGATAAAATGCCATTTCTCACATCTTTATAGCTTAAGGGGTTACCTTAG-CCACAAGGC- i nomLeu3.chr5 C 0 I 1 s rheMac3.chr1 16988052 774 - 229590362 GCGGGTGATCACT-----------CATGAGCCCAGACCG--------------------ATATTTCTAAATTATCTAGATCTACCTTGAACATGGGCTCCGGAGTTACCAGGACACAGTGTTCCCATTCCACTGGGCAGCCATCTATATGTGAAGTGTCATTGTTAGTGGTTTGGGAGTTTTATTTT-CCCTTTCATAACATTTCTC---CCGTCTCCTCAGCTCCCCCAGAACTCCCTGTAATCATATTTGCCATCAGCTGTGTTTGTGGAGATGT-------AGTGAGTTTTTTAGGG--------------------------------------------------ATGAATA------------------------------------------------------CCAATGCTGAGACCCTCCAAGAAGA-CTGTGAGGTCAGCCTCTGTCAGTGTGACAACCTAGCGGGAGGGGG-CCCCAAGCTACACAGCAGGAGATGATTGCCATGCTTCGTGGTGGGAG-----AGCCTGCTCACCAGCTCAGGACCTGCACTCCGTGTGCCTGGCCAGTAGACAGATTTCCCTGGCG-TTCCCCAGGCCTTTTCTGCTTCATGACATTGATTATACAGCTAGCATTTCATTTCAGTAGGGCTTGGGAAAGGGGGTTCTTTATTGCAGCTCCTCTAAAAA-TCCATTTCCACACGAATCACCTCTGGCC-TTTTTCTGTCTGGCACATTGTTTAGAC-AAGAGGGGTTTGTGTGTATCCTTTCCCACCAGCCTCTCTTAAGTGGAAGCCTGGGATTTGGAAATTGGGA-TTGTTTTCCTTGTCTCTAAATGAATGCCTTGTTGG--ATACCTTGTTGATAAAATGCCATTTCTCACATCTTTATAGCTTAAAGGACTACCTTAG-CCACAAGGC- i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223751437 774 - 227556264 GCGGGTGATCACT-----------CATGAGCCCAGACCG--------------------ATATTTCTAAATTATCTAGATCTACCTTGAACATGGGCTCCGGAGTTACCAGGACACAGTGTTCCCATTCCACTGGGCAGCCATCTATATGTGAAGTGTCATTGTTAGTGGTTTGGGAGTTTTATTTT-CCCTTTCATAACATTTCTC---CCGTCTCCTCAGCTCCCCCAGAACTCCCTGGAATCATATTTGCCATCAGCTGTGTTTGTGGAGATGT-------AGTGAGTTTTTTAGGG--------------------------------------------------ATGAATA------------------------------------------------------CCAATGCTGAGACCCTCCAAGAAGA-CTGTGAGGTCAGCCTCTGTCAGTGTGACAACCTAGCGGGAGGGGG-CCCCAAGCTACACAGCAGGAGATGATTGCCATGCTTCGTGGTGGGAG-----AGCCTGCTCACCAGCTCAGGACCTGCACTCCGTGTGCCTGGCCAGTAGACAGATTTCCCTGGCG-TTCCCCAGGCCTTTTCTGCTTCATGACATTGATTATACAGCTAGCATTTCATTTCAGTAGGGCTTGGGAAAGGGGGTTCTTTATTGCAGCTCCTCTAAAAA-TCCATTTCCACACGAATCACCTCTGGCC-TTTTTCTGTCTGGCACATTGTTTAGAC-AAGAGGGGTTTGTGTGTATCCTTTCCCACCAGCCTCTCTTAAGTGGAAGCCTGGGATTTGGAAATTGGGA-TTGTTTTCCTTGTCTCTAAATGAATGCCTTGTTGG--ATACCTTGTTGATAAAATGCCATTTCTCACATCTTTATAGCTTAAAGGACTACCTTAG-CCACAAGGC- i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16801680 774 - 220367699 GCGGGTGATCACT-----------CATGAGCCCAGACCG--------------------ATATTTCTAAATTATCTAGATCTACCTTGAACATGGGCTCCGGAGTTACCAGGACACAGTGTTCCCATCCCACTGGGCAGCCATCTATATGTGAAGTGTCCTTGTTAGTGGTTTGGgagttttatttt-ccctttcataACATTTCTC---CCGTCTCCTCAGCTCCCCCAGAACTCCCTGTAATCATATTTGCCATCAGCTGTGTTTGTGGAGATGT-------AGTGAGTTTTTTAGGG--------------------------------------------------ATGAATA------------------------------------------------------CCAATGCTGAGACCCTCCAAGAAGA-CTGTGAGGTCAGCCTCTGTCAGTGTGACAACCTAGCGGGAGGGGG-CCCCAAGCTACACAGCAGGAGATGATTGCCATGCTTCGTGGTGGGAG-----AGCCTGCTCACCAGCTCAGGACCTGCACTCCGTGTGCCTGGCCAGTAGACAGATTTCCCTGGCG-TTCCCCAGGCCTTTTCTGCTTCATGACATTGATTATACAGCTAGCATTTCATTTCAGTAGGGCTTGGGAAAGGGGGTTCTTTATTGCAGCTCCTCTAAAAA-TCCATTTCCACACGAATCACCTCTGGCC-TTTTTCTGTCTGGCACATTGTTTAGAC-AAGAGGGGTTTGTGTGTATCCTTTCCCACCAGCCTCTCCTAAGTGGAAGCCTGGGATTTGGAAATTGGGA-TTGTTTTCCTTGTCTCTAAATGAATGCCTTGTTGG--ATACCTTGTTGATAAAATGCCATTTCTCACATCTTTATCGCTTAAAGGACTACCTTAG-CCACAAGGC- i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82600032 773 + 85787240 GCGGGTGATCACT-----------CATGAGCCCAAACCG--------------------ATATTTCTAAATTATCTAGATCTACCTTGAACATGGGCTCCGGAGTTACCAGG--ACAGTGTTCCCATTCCACTGGGCAGCCATCTATACGTGAAGTGTCATTGTTAGTGGTTTGGGAGTTTTATTTT-CCCTTTCACAACATTTCTT---CTGTCTCCTCAGCTCCCCCAGAACTCCCTGTAATCATATTTGCCATCAGCTGTGTTTGTGGAGATGT-------AGTGAGTTTTTTAGGG--------------------------------------------------ATGAATA------------------------------------------------------CCAATGCTGAGACCCTCCAAGAAGA-CTGTGAGGTCAGCCTCTGTCAGCGTGACAACCTAGCGGGAGGGGGCCCCCAAGCTACACAGCAGGAGGTGATTGCCATGCGTCGTGGTAGGAG-----AGCCTGCTCACCAGCTCAGGACCTGCACTCCGTGTGCCTGGCCAGCAGACAGATTTCCCTGGTG-TTCCCCAGGCCTTTTCTGCTTCATGACATTGATTATACAGCTAGCATTTCATTTCAGTAGGGCTTGGGAAAGGGGGTTCTTTATTGCAGCTCCTCTAAAAA-CCCATTTCCACACGAATCACCTCTGGCC-TTTTTCTGTCTGGCACATTGTTTATAC-AAGAGGGGTTTGTGTGTATCCCTTCCCACCAGCCTCTCCTAAGTGGAAGCCTGGGATTTGGAAATTGGGA-TGGTTTTCCTTCTCTCTAAATGAATGCCTTGTTGG--ATACCTTGTTGATAAAATGCCATTTCTCACATCTTTATAGCTTAAAGGACTACCTTAG-CCACAAGGC- i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14279455 883 - 49578535 ACAGGGCATCACT-----------CATAAGTCCACGCCG--------------------ATATTTCTAAATGATCTAGCTCTGCCTTGAATGTAGACCTTGGAGGAACCGGGACGCAGCCTTCCCATTCCACTGGGCAGCCATCTGTATGTGAAGTGTCACTGTGGCTGGTTTGGGAGTTTCATTTTCCCCTTTCATAACACTTCTCCTGCTGTTTCCTCAGCTGCCCCAGAGCTCCCTATAATTATATTTGCTATCAGTTGTGTTCAtgg-ggtgctgaggcaggtggatcttttcaggtcaggagttcaagaccagcctggctaacatggtgaaaccccgtgtttattaaaaatacaaaaaattagccagatgtggcagtgcacatctgtagtcTTTTAGGGAAGAATGCCAATGCTGAGGCCCTCCAAGA----CATTGATGTCAGCCTCTGTCAGTGGGAGAGCCCAGGAGGAGGGGA-CCCCAAGCTACATAGCAGGTGATGGTGGTCACGTGTCCTGGTGGAAG-----AGCCTGCTCGCCAGCTCTGAACCTGTACTCTGTG-GCCTGGCCAGTAGACACGCTTCTCTGGCG-TTCCCCAGGCCCTTTCTGCTTCATGGCTCTCCTTATATAGCCAGCATTTCGTTTCAGTGGGGCTTGGG-TAGGGGATTCTTTATTGCAGTTCCTCTAAAAA-CCCATTTCCACAC-AATCACTTCTGGCC-TTTTTCTGTCCGGCATGTTGTTTAGAC-AAGAGGAGTTTGTGTGTCTCCCCTCCCACCAGACTTTCCGAAGTGGAAGCCTGGGATTTGGGAACTGGGATTTTTTTTCCTTCTCTCTAAATGAATGCCTTGTTGA--ATACCTTGTTGATAAAATGCCGTTTCTCACCTCTTTATAGCTTAAGGGACTCCCTTAG-CCACGAGGC- i calJac3.chr19 C 0 C 0 s mm10.chr1 178842500 744 + 195471971 gcaggtgtttacctccacagccAACCTGGGTCCAGACTGTGGGCTGTGAGGTTGGGTCAGCAGCTGTGAGTCACCCAGAGCTTCTGTGAACCTGGACCCCAGGTCT--------GCAAC-TTTGTATTTCA-TAAGCAACCATGCATCCATGAG----CATTGCTGCTGCT------GCTCTCCCCG-CTTTGTAATCGTGTTTTTC---CT-TTTCCTTAGCT--CTGGGGTTTCAATGTAA-CATCTTAGCCGTCTTTTAGTATCATGGAGGCTT--------GTGGCTTTTCCAGGG---------------------------------------------------TGGACG------------------------------------------------------TCAATGCTGGAGCCCTCTAGGAACT-TCTTGTCTTTAGCCCTTGTCTGTG-GACAGCTCAGTG---GGGCA-CCTCTGCCTATACAGCAGCCCCTGGTTGTCATGTATCCTGTTGAGAACTGGTCACCTGCTGGCTACCTCGAAGCCTGCACTCAGTGT--CTGACCAGCCAAGAGGTTCCCTTGG-G-CTTCCCAGAACTCCCGT----------------------------------CTTCTGTAAGGCTGGGG--AGGGACTCCTTTATC-CAGCTCTTCCAGTAA-CGCATTTCCTCACCAGTCACCACTGGCTAGTTTTCAGTTTGGCACATGGTTTAGACAAAGAGGATTTTGTATGTATCACTTCCCACCAGACTCTCCTAAGTGGAAGCCTGGGATTTGGAAACTGAGG-TTGTTTTTCTGCTCTTTAAATGAGCGACTTTCTGGACACACCTTGTTAACACAGTGTAGTTCCTCACGTCTTTATTACAAGAGGGACTGCCTGAGCCCATCGGG-- i mm10.chr1 I 163 C 0 s canFam3.chr7 36424043 728 + 80974532 AGAGGTTATCCCT-----------GGAGAGGCCAGGCAG--------------------GCGTTTCCGGGTCATCGAGACGGTCCCTGAAGATGGGC-CTGGAGTTAGCGGG-CATAGCTTCT------------GCACCCATCTGTGCGTGCAGT-TCATTGC-------------ATTGGAGCTG-ACCAGCTGTGAGACTTCCCC--CTTTTTCCTTAGCTCCTCCTG--CACCCAGGGACCACATT-GCCATCATTTGTCTTTGTGAGGATTC-------AGGGACCTTTTGGGGG--------------------------------------------------AAGCATC-----------------------------------------------------------------------CAGAAAGACCTGTAATGCTGGTCTTTGTCTTTGTGACAGCCCAGTGGGAGCCGT-GCCCTGGGCCCACAGCATGAGCCAATTTACATGTGTCATGGCCAGAC-----GGCCTCCTGGCCACCTCTGAACCTTCACTCTGAGGGTCTGAGCATCGAAAAGGCTTCTCTGGAGCTTTCCCAGGCTTTTTCTGCCTTGTTACATTGATTATATAGCTAGCTGTTCTT-----TAGGGCTTGGGAAAGGGGGTACTTTATAGCTGCTCCTCTAAAAACCCCATTTCCACACAAACTGCCTCTGGTC-TTTCTCTACTTGGCACGTTGTTTAGACAAAGAGGAGTTTGTGTGTATCACTTCCCACAAGACACCCTTAAGTGGAAGCCTGGGATTTGAAAGTTGGGAATTTTTTTTCTGCCCTCTAAATGAATGCCTTGTTAG--GTAGGTAGCTGACACAGAACTGTTTCTCACCTCTTTATAGCATAAGGGCCTGCCTTAT-CCACAAGGAC i canFam3.chr7 C 0 C 0 a score=740768.000000 s hg38.chr1_KI270759v1_alt 271248 278 + 425601 ACAGTCCCTTATTACTGATAA---GAGCTACTGTCATTTCACTTATATACTTTGGGAGATTCATTTTTGCTTCTCAGCATCATTTATG--TTATGA-TTCATATCTAAATTTAAGGTAAAATTTTATGCT-TCAC---------CATCGACTTTTCA-AAGTTTGTCTTTGAAAATG---A---TTTTTAAAATGATCTAATCCAAACCTCTCAGTTTA-CAGGTGAGAAA---AC--AAATCTAGGGcagagtttttccacaggggcacgagtgatgtcatgg-accagatgtt--tgtgtcgtagggg---- s panTro4.chr1 225028053 278 + 228333871 ACAGTCCCTTATTACTGATAA---GAGCTACTGTCATTTCACTTATATACTTTGGGAGATTCATTTTTGCTTCTCAGCATCATTTATG--TTATGA-TTCATATCTAAATTTAAGGTAAAATTTTATGCT-TCAC---------CATCGACTTTTCA-AAGTTTGTCTTtgaaaatg---a---tttttaaaatgatctaatccaaacctctcagttta-caggtgagaaa---ac--AAATCTAGGGcagagtttttccacaggggcacgagtgatgtcatgg-accagatgtt--tgtgtcgtagggg---- i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140280205 278 - 143122389 ACAGTCCCTTATTATTGATAA---GAGCTACTGTCATTTCACTTATATACTTTGGGGGATTCATTTTTGCTTCTCAGCATCATTTACG--TTATGA-TTCCCATCTAAACTGAAGGTAAAATTTTATACC-TCAC---------CATCGACTTTTCA-AAGTTTGTCTTtgaaaatg---a---tttttaaaatgatccaatccaaacctctcagttta-caggtgagaaa---ac--AAATCTAGGGcagagtttttccacaggggcacgagtgatgtcatgg-accagatgtt--tgtgtcgtggggg---- i nomLeu3.chr5 I 1 I 7 s rheMac3.chr1 16988827 277 - 229590362 ACAGTCCCTTATTATTGATAA---GAGCTACTG-CATTCCACTTATATACTTTGGGGGATTCATTTTTGCTTTTCAGCATCATTTATG--TTATGA-TTCATATCTAAATTTAATGTAAAATTATATGCT-TCCC---------CATTGACTTTTCA-AACTTTGTCTTTGAAAATG---A---TTTTTAAAATGATCTAATCTAAACCTCTCAGTTTA-TAGGTGAGAAA---AC--AAATCTAGGGcagagtttttccaccggggcacgagtgaggtcatgg-accagatgat--tgtgtcgtagggg---- i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223752212 277 - 227556264 ACAGTCCCTTATTATTGATAA---GAGCTACTG-CATTCCACTTATATACTTTGGGGGATTCATTTTTGCCTTTCAGCATCATTTATG--TTATGA-TTCATATCTAAATTTAATGTAAAATTATATGCT-TCCC---------CATTGACTTTTCA-AACTTTGTCTTTGAAAATG---A---TTTTTAAAATGATCTAATCTAAACCTCTCAGTTTA-TAGGTGAGAAA---AC--AAATCTAGGGcagagtttttccaccggggcacgagtgaggtcatgg-accagatgat--tgtgtcgtagggg---- i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16802455 278 - 220367699 ACAGTCCCTTATTATTGATAA---GAGCTACTGTCATTCCACTTATATACTTTGGGGGATTCATTTTTACCTTTCAGCAGCATTTATG--TTATGA-TTCATATctaaatttaatgtaaaattatatgcT-TCCC---------CATTGACTTTTCA-AACTTTgtctttgaaaatg---a---tttttaaaatgatctaaTCCAAACCTCTCagttta-taggtgagaaa---ac--aaaTCTAGGGCAGAGTTTTTCCACTGGGGCACGAGTGAGGTCATGG-ACCAGATGAT--TGTGTCGTAGGGG---- i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82600806 276 + 85787240 ACAGTCCCTTATTATTGATAA---GAGCTACTGTCATTCCACTTATATACTTTGGGGGATTCATTTTTGCCTTTCAGCATCATTTATG--TTATGA-TTCATATCTAAATTTAATGTAAAATTATATGCT-TCCC---------CATCGACTTTTCA-AAC--TGTCTTTGAAAATG---A---TTTTTAAAATGATCTAATCCAAACCTCTCAGTTTA-TAGGTGAGAAA---AC--AAATCTAGGGcagagtttttccaccagggcaggagtgaggtcatgg-accagatgat--tgtgtcatagggg---- i chlSab2.chr25 I 1 C 0 s calJac3.chr19 14280338 278 - 49578535 -CACGTTCTTACTATTGATAT---GAGCTACTGTAGTGCCACTTACATGCTTTGGGGGATTCATTTTTGCTCCTC-GCATCATCTATG--TCATGA-TTCATACTGAAATTTAACGCAAAGGTGTATGCTGTCTC---------CATCCACTTTTCA-AAGTTTGTCTTTGAAATTG---ATTTTTTTTTaaattatctaatccaaacctctcagttta-caggtgagaaa---ac--aaatctagagCAGAGTTTTCCAATAGGGACATGAGCGAGGTTGAGGTGGTGGATGAT--TGTG---TGGGGG---- i calJac3.chr19 C 0 C 0 s mm10.chr1 178843244 277 + 195471971 ACATTCTCTTACTATTAACAT---GAGCGCCTGTGATCCCGTTTATATACATTAGAAAATTAATTTTTGCTTCTCAGAATCATGTGTGATGTGTGG-CTCACATCCAAGATTAATGTAAAATTATATACT-TTCC---------CA--AATATTTCA----TCTACATTTCAGAATC---T---AGTTAAAAAAAAAAAGATTTCCAGCTTTCATTTTAGCATGTGAGAAA---GCAGAGATCTAGAACAGGGGCCTTCAGTGATAGTATTGTTAATATT-TGA-GCCAAGTAAC--TGTGTGACAGGAG---- i mm10.chr1 C 0 I 7 s canFam3.chr7 36424771 301 + 80974532 ACATTCCCTTAGTATTAATAATATGAGCCACTGTATTTACACTTGTGTACTTTGAGCAGTTCATTTCTGCTTCTCGGCATCATTTGTG--ATGTGATTTCATATCAAACTTTAATATAAAATTATATACT-GCCCAAAATACTTCAACTACATTTCAGAATTTTGTCTCAAAAAATATATA---TTTTTTaaatgacctaatccaaacctctccttttg-cagatgagaaagacag--aaacctagagcagggtttctcaagagcagcac---tgctgtttttg-ggccgctaattctgtgttgtggtgggggg i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226396648 507 - 229942017 I a score=75109.000000 s hg38.chr1_KI270759v1_alt 271526 21 + 425601 gatgcctggtgcactgtaggg s panTro4.chr1 225028331 21 + 228333871 gatgcctggtgcactgtaggg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397155 21 - 229942017 GAtgcctggtgcactgtaggg i ponAbe2.chr1 I 507 C 0 s nomLeu3.chr5 140280490 21 - 143122389 gatgcctggtgcactgcaggg i nomLeu3.chr5 I 7 C 0 s rheMac3.chr1 16989104 21 - 229590362 tatgcctggtgtactgtaggg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752489 21 - 227556264 tatgcctggtgtactgtaggg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16802733 21 - 220367699 TATGCCTGGTGTACTGTAGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601082 21 + 85787240 gatgcctggtgtactgtaggg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14280616 21 - 49578535 GATGCCTGGGGCACTGCAGGG i calJac3.chr19 C 0 I 804 s mm10.chr1 178843528 21 + 195471971 GGTGCCTGGTGTCTTGGGGAA i mm10.chr1 I 7 C 0 s canFam3.chr7 36425072 21 + 80974532 gatgtctgacacatgatacag i canFam3.chr7 C 0 C 0 a score=16537.000000 s hg38.chr1_KI270759v1_alt 271547 6 + 425601 catttc s panTro4.chr1 225028352 6 + 228333871 tatttc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397176 6 - 229942017 catttc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280511 6 - 143122389 catttc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989125 6 - 229590362 catttc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752510 6 - 227556264 catttc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16802754 6 - 220367699 CATTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601103 6 + 85787240 catttc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178843549 6 + 195471971 TACTCC i mm10.chr1 C 0 I 8 s canFam3.chr7 36425093 6 + 80974532 tgttca i canFam3.chr7 C 0 C 0 e calJac3.chr19 14280637 804 - 49578535 I a score=69200.000000 s hg38.chr1_KI270759v1_alt 271553 25 + 425601 ctgggatctcaagcttctatcctct s panTro4.chr1 225028358 25 + 228333871 ctgggatctcaggcttctatcctct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397182 24 - 229942017 ctgggatctcaggc-tctatcctct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280517 25 - 143122389 ctgggatctcaggcttctatcctct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989131 25 - 229590362 ctgggatctcaggcttctatcctct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752516 25 - 227556264 ctgggatctcaggcttctatcctct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16802760 25 - 220367699 CTGGGATCTCAGGCTTCTATCCTct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601109 25 + 85787240 ctgggatctcaggcttctatcctct i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36425099 25 + 80974532 gcagcattctaggcttccacccttt i canFam3.chr7 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e calJac3.chr19 14280637 804 - 49578535 I a score=777182.000000 s hg38.chr1_KI270759v1_alt 271578 257 + 425601 ggatgccagtagcaccctccaagtt--gtgaccaacaa------aaatgtccccTg-----------------------------tcacacagctaagtcataacagagtcaggcataagacacgggtgtcccgactcccccatc----tgccc-------------------tttcCAGGTTGGGCAACAGAATTAAGCTCTCAACCCACACAGAGCTCAGAGAATTAGTCAAGAGCACTTCCACA-ATCTCCAGGGA--GAGAAGAGGGTTTAGGAGACAAAAGAGCCAACAGCATGGAAGAGCTTTGTGGAACTCTG s panTro4.chr1 225028383 249 + 228333871 ggatgccagtagcacccttcaagtt--gtgaccaacaa------aaatgtcccctg-----------------------------tcacacagccaagtCATGACAGAGTCAGGCATAAGACACGGGTGTCCCGACTCCCCCATC----TGCCC-------------------TTTCCAGGTTGGGCAACAGAATTAAGCTCTCAACCCACACAGAGCTCAGAGAATTAGTCAAGAGCACTTCCACA-ATCTCCAGGGA--GAGAAGAGGGTTTAGGAGACAAAGGAGCCAACAGCATGGAAGAGCTTTGTG-------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397206 284 - 229942017 ggatgccagtagcg-cctccaaatt--gtgaccaacaa------aaatgtcccTGG-TGAAGAACTACTGGTCTAGAgctaaagatcacacagctaagtcatgacagagtcaggcataagacacaggtgtcccgactccccagtc----tgccc-------------------tttcCAGGTTGGGCAACAGAATTAAGCTCTCAACCCACACAGAGCTCAGACAATTAGTCAAGAGCACTTCCACA-ATCTCCAGGGA--GAGAAGAGGGTTTAGGAGACAAAGGAGCCAACAGCATGGAAGAGCTTTGTGGAACTCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280542 286 - 143122389 ggatgccagtagcaccctccaagtt--gtgaccaacaa------aaatgtccccTGGTGAAGGACTACTGGCCTAGAgctaaagatcacacagctaagtcatgacagagtcaggcataagacacgggtgtcccgactccccaatc----tgccc-------------------tttcCAGGTTGGGCAACAGAATTAAGCTCTCAACCCACATAGAGCTCAGAGAATTAGTCAAGAGCACTTCCACA-ATCTCCAGGGA--GAGAAGAGGGTTTAGGAGACAAAGGAGCCAACAGCGTGGAAGAGCTTTGTGGAACTCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989156 285 - 229590362 ggatgccagcagcaccctccaagtt--gtgaccaacag------aaatgtccccTGGTGAAGAACTACTGGCCTAGAgctaaagatcacatagctaagtcatgac--agtcaggcataggacccgggtgtttcaactccccagtc----tgccc-------------------tttcCAGGTTGGGCAACAGAATTAAACTCTCAACCCACACAGAGCTCAGAGAATTAGTCAAGAGCACTTCCACAGATCTCCAGAGA--GAGAAGAGGGTTTAGGAGACAACGGAGACAACAGCGTGGAAGAGCTTCGTGGAACTCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752541 285 - 227556264 ggatgccagcagcaccctccaagtt--gtgaccaacag------aaatgtccccTGGTGAAGAACTACTGGCCTAGAgctaaagatcacatagctaagtcatgac--agtcaggcataggacccgggtgtttcaactccccagtc----tgccc-------------------tttcCAGGTTGGGCAACAGAATTAAACTCTCAACCCACACAGAGCTCAGAGAATTAGTCAAGAGCACTACCACAGATCTCCAGAGA--GAGAAGAGGGTTTAGGAGACAACGGAGACAACAGCGTGGAAGAGCTTCGTGGAACTCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16802785 285 - 220367699 ggatgccagtagcaccctccAAGTT--GTGACCAACAG------AAATGTCCCCTGGTGAAGAACTACTGGCCTAGAGCTAAAGATCACATAGCTAAGTCATGAC--AGTCAGGCATAGGACCCGGGTGTTTCAACTCCCCAGTC----TGCCC-------------------TTTCCACGTTGGGCAACAGAATTAAACTCTCAACCCACACAGAGCTCAGAGAATTAGTCAAGAGCACTTCCACAGATctccagaga--gagaagagggttTAGGAGACAACGGAGACAACAGCGTGGAAGAGCTTCGTGGAACTCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601134 276 + 85787240 ggatgccagcagcaccctccaagtt--gtgaccaacag------aaatgtccccTGGTGAAGGACTACCGGCCTAGAgctaaagatcacatagctaagtcatgac--agtcaggcataggacccgggtgtctcaactccccagtc----tgccc-------------------tttcGAGGTTGGGCAACAGAATTAAACTCTCAACCCACACAGAGCTCAGAGAATTAGTCAAGAGCACTTCCACAGATCTCCAGAGA--GAGAAGAGGGTTTA---------GGAGACAACAGCGTGGAAGAGCTTGGTGGAACTCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14281441 242 - 49578535 GGATGC--------------------------------------------------GGGAAGAACTACTGGCTTCAAgctaaagatcacacagctaagtcatgacagagtcagacatggggccctggtgtcccaactcccagatc----tccct-------------------tttccaGATTGGGCAACGGAATGAAGCTCTCAACCCTCAC--AGCTCAGGGAATTCATCAAGAGCACTTCCACCGATCTCGAGGGA--GGGAAGA-GGTTTAGGAGGCAAAGGAGCCAATGGCGCAGAAGAGATCTGTGGAACTCTG i calJac3.chr19 I 804 C 0 s canFam3.chr7 36425124 312 + 80974532 acatgccagcagcatcccccAAATGCAGCAACTTACGATGTTGCCAGTGTTCCCTGGTG-AGAACCAACAGTCTAGGACT---ggccacacagccaggctgtgacaaggtcagaaacagaaccagggtgtccagactctcagATCCAGGTGTCCAGAGTCTCAGACACCTGAGTTTCCA-GCTGGGGAGGTGAACTGAGCTCCCAACCTGACCAGGACTCAAAGTCATGGTCAAGAGCACCTCCACGGCTCTCAAGGGACTGGGAAGAGAG---AGGGGGCCAAGGAACCAACAGCAGGGGAGAATTTTGTGGGACTCAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I a score=27659.000000 s hg38.chr1_KI270759v1_alt 271835 12 + 425601 GGCGATGCATCC s ponAbe2.chr1 226397490 12 - 229942017 GGCGATGCATCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280828 12 - 143122389 GGCAATGCATCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989441 12 - 229590362 GGCACTGCATCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752826 12 - 227556264 GGCACTGCATCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803070 12 - 220367699 GGCACTGCATCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601410 12 + 85787240 GGCACTGCATCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14281683 12 - 49578535 GGCAATGCATCC i calJac3.chr19 C 0 I 1 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e panTro4.chr1 225028632 0 + 228333871 C a score=12033.000000 s hg38.chr1_KI270759v1_alt 271847 6 + 425601 CCTACA s ponAbe2.chr1 226397502 6 - 229942017 CCTACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280840 6 - 143122389 CCTACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989453 6 - 229590362 CCTACA i rheMac3.chr1 C 0 I 74 s macFas5.chr1 223752838 6 - 227556264 CCTACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803082 6 - 220367699 CCTACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601422 6 + 85787240 CCTACA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e panTro4.chr1 225028632 0 + 228333871 C a score=398.000000 s hg38.chr1_KI270759v1_alt 271853 1 + 425601 T s ponAbe2.chr1 226397508 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280846 1 - 143122389 T i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223752844 1 - 227556264 C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803088 1 - 220367699 C i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601428 1 + 85787240 T i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e rheMac3.chr1 16989459 74 - 229590362 I e panTro4.chr1 225028632 0 + 228333871 C a score=26063.000000 s hg38.chr1_KI270759v1_alt 271854 21 + 425601 GGAAGAGCTTT-----------------------------------------GTTGAACTCC s panTro4.chr1 225028632 7 + 228333871 -------------------------------------------------------GAACTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397509 21 - 229942017 GGAAGAGCTTT-----------------------------------------GTGAAACTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280847 62 - 143122389 GGAAGAGCTTTGTGGAACTCCGGGCAATGTATCCCCTCACCATAAGAGCTTTGTGGAACTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989533 21 - 229590362 GGAAGAGCCTT-----------------------------------------GTGGAACTCC i rheMac3.chr1 I 74 C 0 s macFas5.chr1 223752845 21 - 227556264 GGAAGAGCTTT-----------------------------------------GTGGAACTGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803089 21 - 220367699 GGAAGAGCTTT-----------------------------------------GTGGAACTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601429 21 + 85787240 GGAAGAGCTTT-----------------------------------------GTGGAACTCC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=205.000000 s hg38.chr1_KI270759v1_alt 271875 1 + 425601 A s panTro4.chr1 225028639 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397530 1 - 229942017 G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280909 1 - 143122389 G i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989554 1 - 229590362 G i rheMac3.chr1 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e chlSab2.chr25 82601450 0 + 85787240 C e papAnu2.chr1 16803110 0 - 220367699 C e macFas5.chr1 223752866 0 - 227556264 C a score=66876.000000 s hg38.chr1_KI270759v1_alt 271876 38 + 425601 GGCGATGCTTCCCCTATACGGAAGAGCTTTGTGGAACT s panTro4.chr1 225028640 38 + 228333871 GGCGATGCTTCGCCTATACGGAAGAGCTTTGTGGAACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397531 38 - 229942017 GGCAATGCATCCCCTCACCGGAAGAGCTTTGTGGAACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280910 38 - 143122389 GGCGACGCATCTCCTCACCGGAAGAGCTTTGTGGAACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989555 33 - 229590362 GGCGATGCTTCCCCTCACCGGAAGAGCT-----GAACT i rheMac3.chr1 C 0 T 108 s macFas5.chr1 223752866 33 - 227556264 GGCAATGCATCCCCTCACCGGAAGAGCT-----GAACT i macFas5.chr1 C 0 T 34 s papAnu2.chr1 16803110 33 - 220367699 GGCAATGCATCCCCTCACCGGAAGAGCT-----GAACT i papAnu2.chr1 C 0 I 2 s chlSab2.chr25 82601450 33 + 85787240 GGCAATGCATCCCCTCACCGGAAGAGCT-----GAACT i chlSab2.chr25 C 0 I 2 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=21966.000000 s hg38.chr1_KI270759v1_alt 271914 20 + 425601 C--GGCAGTGCATCCCCTACAC s panTro4.chr1 225028678 20 + 228333871 C--GGCAATGCATCCCCTCACC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397569 22 - 229942017 CCGGGCGATGCTTCCCCTACAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280948 22 - 143122389 CCGGGCGATGCTTCCCCTACAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989480 20 - 229590362 --CGGCAATGCATCCCCTCACC i rheMac3.chr1 T 108 C 0 s macFas5.chr1 223752865 20 - 227556264 --CGGCAATGCATCCCCTCACC i macFas5.chr1 T 34 C 0 s papAnu2.chr1 16803145 17 - 220367699 --GGGCAGT---TCCCCTAACC i papAnu2.chr1 I 2 C 0 s chlSab2.chr25 82601485 17 + 85787240 --GGGCAAT---TCCCCTAACC i chlSab2.chr25 I 2 T 52 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=19072.000000 s hg38.chr1_KI270759v1_alt 271934 22 + 425601 GGAAGAGCTTTGTGGAACTCCA s panTro4.chr1 225028698 22 + 228333871 GGAAGAGCTTTGTGGAACTCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397591 20 - 229942017 GGAAGAGCTTTGTGAAACT--T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280970 20 - 143122389 AGAAGAGCTTTGTGAAACT--C i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989500 17 - 229590362 GGAAGAGCT-----GAACTCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752885 17 - 227556264 GGAAGAGCT-----GAACTCTG i macFas5.chr1 C 0 T 36 s papAnu2.chr1 16803162 22 - 220367699 GGAAGAGCCTTGGGGAACTCCG i papAnu2.chr1 C 0 T 74 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e chlSab2.chr25 82601502 52 + 85787240 T a score=72779.000000 s hg38.chr1_KI270759v1_alt 271956 39 + 425601 GGCGATGCATCTCCTCACCGGAAGAGCTTTGTGGAACTC s panTro4.chr1 225028720 39 + 228333871 GGCAGTGCATCCCCTACACGGAAGAGCTTTGTGGAACTC i panTro4.chr1 C 0 I 39 s ponAbe2.chr1 226397611 39 - 229942017 GGCAATGCATCCCCTCACTGGAAGAGCTTTGTGGAACTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140280990 39 - 143122389 GGCAATGCATCCCCTCACCGGAAGAGCTTTGTGGAACTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989517 36 - 229590362 GGCAAT---TCCCCTAACCGGAAGAGCCTTGTGGAACTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752866 34 - 227556264 GGCAATGCATCCCCTCACCGGAAGAGCT-----GAACTC i macFas5.chr1 T 36 C 0 s papAnu2.chr1 16803110 34 - 220367699 GGCAATGCATCCCCTCACCGGAAGAGCT-----GAACTC i papAnu2.chr1 T 74 C 0 s chlSab2.chr25 82601450 34 + 85787240 GGCAATGCATCCCCTCACCGGAAGAGCT-----GAACTC i chlSab2.chr25 T 52 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=19263.000000 s hg38.chr1_KI270759v1_alt 271995 20 + 425601 CGGGCGATGCATCTCCTCAC s panTro4.chr1 225028798 20 + 228333871 CTGGCAGTGCATCCCCTACA i panTro4.chr1 I 39 C 0 s ponAbe2.chr1 226397650 20 - 229942017 CTGGCAATGCATCCCCTACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281029 20 - 143122389 CTGACAATGCATCCCCTACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989553 20 - 229590362 CGGGCGATGCTTCCCCTCAC i rheMac3.chr1 C 0 T 114 s macFas5.chr1 223752900 17 - 227556264 TGGGCAA---TTCCCCTAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803144 17 - 220367699 TGGGCAG---TTCCCCTAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601484 17 + 85787240 TGGGCAA---TTCCCCTAAC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=35358.000000 s hg38.chr1_KI270759v1_alt 272015 23 + 425601 CGGAA---------GAGCTTT--------------------------GTGGAACTCCG s panTro4.chr1 225028818 23 + 228333871 CGGAA---------GAGCTTT--------------------------GTGGAACTCCA i panTro4.chr1 C 0 T 82 s ponAbe2.chr1 226397670 23 - 229942017 CGGAA---------GAGCTTT--------------------------GTGGAACTCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281049 58 - 143122389 CGGAAATCTTTGTGGAAGTCTGGGCAATGCATCCCCTAACCGGAAGAGTGGAACTCCG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989459 22 - 229590362 CGGAA---------GAGCTTT--------------------------GTGGAACTGC- i rheMac3.chr1 T 114 C 0 s macFas5.chr1 223752917 23 - 227556264 CGGAA---------GAGCCTT--------------------------GTGGAACTCCG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803161 23 - 220367699 CGGAA---------GAGCCTT--------------------------GGGGAACTCCG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601501 23 + 85787240 CGGAA---------GAGCCTT--------------------------GTGGAACTCCG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=35048.000000 s hg38.chr1_KI270759v1_alt 272038 15 + 425601 GGCGATGCATCTCCT s panTro4.chr1 225028759 15 + 228333871 AGCAATGCATCCCCT i panTro4.chr1 T 82 C 0 s ponAbe2.chr1 226397693 15 - 229942017 GGCAATGCATCCCCT i ponAbe2.chr1 C 0 I 4 s nomLeu3.chr5 140281107 15 - 143122389 GGCAATGCATCCCCC i nomLeu3.chr5 C 0 I 1 s rheMac3.chr1 16989481 15 - 229590362 GGCAATGCATCCCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752940 15 - 227556264 GGCGATGCATCCCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803184 15 - 220367699 GGCGATGCATCCCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601524 15 + 85787240 GGCGATGCGTCCCCT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=43331.000000 s hg38.chr1_KI270759v1_alt 272053 45 + 425601 CACCGGAAGAGCTTTGTGGAGCTCCGGGCGATGCATCCCCTCACC s panTro4.chr1 225028774 45 + 228333871 CACCGGAAGAGCTTTGTGGAACTCCTGGCAGTGCATCCCCTACAC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140281123 40 - 143122389 AATCGGAAGA-----GTGGAACTCCGGGCAATGCATCCCCTAACC i nomLeu3.chr5 I 1 C 0 s rheMac3.chr1 16989496 13 - 229590362 CACCGGAAGAGCT-------------------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752955 45 - 227556264 AATCGGAAGAGCCTTGTGGAACTCCGGGCGATGCATCCCCTAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803199 45 - 220367699 CACCGGAAGAGCTTTATGGAACTCCGGGCGATGCATCCCCTCACC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601539 45 + 85787240 CACCGGAAGAGCTTTACGGAACTCCGGGCGATGCGTCCCCTCACC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e ponAbe2.chr1 226397708 4 - 229942017 I a score=91336.000000 s hg38.chr1_KI270759v1_alt 272098 48 + 425601 GGAAGAGCTTTGTGGAACTCCGGGCGATGCATCTCCTCACCGGAAGAG s panTro4.chr1 225028819 48 + 228333871 GGAAGAGCTTTGTGGAACTCCAGGCGATGCATCTCCTCACCGGAAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397712 48 - 229942017 GGAAGAGCTTTGTGGAACTCCGGGCGATGCATCTCCTCACCGGAAGAG i ponAbe2.chr1 I 4 C 0 s nomLeu3.chr5 140281163 43 - 143122389 GGAAGA-----GTGGAACTCCGGGCAATGCATCCCCTAACCGGAAGAG i nomLeu3.chr5 C 0 I 36 s rheMac3.chr1 16989509 31 - 229590362 --------------GAACTCTGGGCAAT---TCCCCTAACCGGAAGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223753000 48 - 227556264 GGAAGAGCTTTATGGTACTCCGGGCGATGCATCCCCTAATCGGAAGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803244 48 - 220367699 GGAAGAGCTTTATGGAACTCCGGGCGATGCATCCCCTCACCGGAAGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601584 48 + 85787240 GGAAGAGCTTTACGGAACTCCGGGCGATGCGTCCCCTCACCGGAAGAG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=6622.000000 s hg38.chr1_KI270759v1_alt 272146 4 + 425601 CTTT s panTro4.chr1 225028867 4 + 228333871 CTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397760 4 - 229942017 CTTT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 16989540 4 - 229590362 CCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223753048 4 - 227556264 CCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803292 4 - 220367699 CTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601632 4 + 85787240 CTTT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e nomLeu3.chr5 140281206 36 - 143122389 I a score=115454.000000 s hg38.chr1_KI270759v1_alt 272150 57 + 425601 GTGGAACTCCGGGCGATGCATCCCCTCACCGGAAGAGCTTTGTGGAACTCCGGGCGA s panTro4.chr1 225028871 57 + 228333871 GTGGAACTCCGGGCGATGCATCCCCTCACCGGAAGAGCTTTGTGGAACTCCTGGCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397764 57 - 229942017 GTGGAACTCCGAGTGATGCTTCCCCCACACGGAAGAGCTTTGTGGAACTCTGGGCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281242 52 - 143122389 GTGGAACTCCGGGCAATGCATCCCCTAACCGGAAGA-----GTGGAACTCCGGGCAA i nomLeu3.chr5 I 36 C 0 s rheMac3.chr1 16989544 52 - 229590362 GTGGAACTCCGGGCGATGCTTCCCCTCACCGGAAGAGCT-----GAACTCTGGGCAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223753052 57 - 227556264 GTGGAACTCCGGGCGATGCATCCCCTAATGGGAAGAGCTTTATGGAACTCCGGGCGA i macFas5.chr1 C 0 T 201 s papAnu2.chr1 16803296 57 - 220367699 ATGGAACTCCGGGCGATGCATCCCCTAACCGGAAGAGCTTTATGGAACTCCGGGCGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601636 57 + 85787240 GTGGAACTCCGGGCAATGCATCCCCTCACCGGAAGAGCTTTGTGGAACTCTGGGCAA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=14163.000000 s hg38.chr1_KI270759v1_alt 272207 8 + 425601 TGCTTCCC s panTro4.chr1 225028928 8 + 228333871 TGCATCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397821 8 - 229942017 TGCATCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281294 8 - 143122389 TGCATCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989596 8 - 229590362 TGCATCCC i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16803353 8 - 220367699 TGTATCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601693 8 + 85787240 TGCATCCC i chlSab2.chr25 C 0 T 54 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e macFas5.chr1 223753109 201 - 227556264 T a score=14719.000000 s hg38.chr1_KI270759v1_alt 272215 35 + 425601 CTACAAGGAAGAGCTTTCTGGAACTC--GGCAATGCA s panTro4.chr1 225028936 35 + 228333871 CTACACGGAAGAGCTTTGTGGAACTC--GGCAATGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397829 37 - 229942017 CTACATGGAAGAGCTTTGTGGAACTCCGGGCAATGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281302 32 - 143122389 CTAACCGGAAGAG-----TGGAACTCCGGCCAATGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989604 36 - 229590362 CTACACGGAAGAGCTTTGTGGAACTCC-GGCAATGCA i rheMac3.chr1 C 0 I 33 s papAnu2.chr1 16803361 3 - 220367699 CTA---------------------------------- i papAnu2.chr1 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e chlSab2.chr25 82601701 54 + 85787240 T e macFas5.chr1 223753109 201 - 227556264 T a score=22534.000000 s hg38.chr1_KI270759v1_alt 272250 22 + 425601 TCCCCTCACCGGAAGAG-----CCTTG s panTro4.chr1 225028971 17 + 228333871 TCCCCTAACCGGAAGA----------G i panTro4.chr1 C 0 T 75 s ponAbe2.chr1 226397866 22 - 229942017 TCCCCTCACCGGAAGAG-----CTTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281334 27 - 143122389 TCCCCTAACCGGAAGAGTGGAACTCCG i nomLeu3.chr5 C 0 I 26 s rheMac3.chr1 16989673 22 - 229590362 TCCCCTAACCGGAAGAG-----CCTTG i rheMac3.chr1 I 33 C 0 s macFas5.chr1 223752908 22 - 227556264 TCCCCTAACCGGAAGAG-----CCTTG i macFas5.chr1 T 201 C 0 s papAnu2.chr1 16803364 15 - 220367699 -------ACCGGAGGAG-----CTTTA i papAnu2.chr1 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e chlSab2.chr25 82601701 54 + 85787240 T a score=15347.000000 s hg38.chr1_KI270759v1_alt 272272 10 + 425601 TGGCACTCCT s panTro4.chr1 225028913 10 + 228333871 TGGAACTCCT i panTro4.chr1 T 75 C 0 s ponAbe2.chr1 226397888 10 - 229942017 TGGAACTCCG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281387 10 - 143122389 TGGAACTTCG i nomLeu3.chr5 I 26 C 0 s rheMac3.chr1 16989695 10 - 229590362 TGGAACTCCG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752930 10 - 227556264 TGGAACTCCG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803379 10 - 220367699 CGGAACTCCG i papAnu2.chr1 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e chlSab2.chr25 82601701 54 + 85787240 T a score=9827.000000 s hg38.chr1_KI270759v1_alt 272282 5 + 425601 GGCAG s panTro4.chr1 225028923 5 + 228333871 GGCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397898 5 - 229942017 GGCGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281397 5 - 143122389 GGCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989705 5 - 229590362 GGCGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223752940 5 - 227556264 GGCGA i macFas5.chr1 C 0 I 164 s papAnu2.chr1 16803389 5 - 220367699 GGTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601647 5 + 85787240 GGCAA i chlSab2.chr25 T 54 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=52959.000000 s hg38.chr1_KI270759v1_alt 272287 26 + 425601 TGCATCCCCTACACGGAAGAGCTTTG s panTro4.chr1 225028928 26 + 228333871 TGCATCCCCTACACGGAAGAGCTTTG i panTro4.chr1 C 0 I 34 s ponAbe2.chr1 226397903 26 - 229942017 TGCATCTCCTCACCGGAAGAGCTTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281402 21 - 143122389 TGCATCCCCTAACCGGAAGAG----- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989710 26 - 229590362 TGCATCCCCTAATCGGAAGAGCTTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223753109 26 - 227556264 TGCATCCCCTAATCGGAAGAGCTTTG i macFas5.chr1 I 164 C 0 s papAnu2.chr1 16803394 26 - 220367699 TGCATCCCCTAATCGGAAGAGCTTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601652 26 + 85787240 TGCATCCCCTCACCGGAAGAGCTTTG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=59160.000000 s hg38.chr1_KI270759v1_alt 272313 23 + 425601 TGGAACTCTGGGCAATGCATCCC s panTro4.chr1 225028988 23 + 228333871 TGGAACTCCAGGCAATGCATCCC i panTro4.chr1 I 34 C 0 s ponAbe2.chr1 226397929 23 - 229942017 TGGAACTCCGGGCAATGCATCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281423 23 - 143122389 TGGAACTCCGGGCAATGCATCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989736 23 - 229590362 TGGAACTCTGGGCAATGCATCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223753135 23 - 227556264 TGGAACTCTGGGCAATGCATCCC i macFas5.chr1 C 0 T 123 s papAnu2.chr1 16803420 23 - 220367699 TGGAACTCTGGGCAATGCATCCC i papAnu2.chr1 C 0 T 123 s chlSab2.chr25 82601678 23 + 85787240 TGGAACTCTGGGCAATGCATCCC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I a score=31314.000000 s hg38.chr1_KI270759v1_alt 272336 27 + 425601 CTAACCGGAAGAGCTTTGTGGAACTGC- s panTro4.chr1 225029011 27 + 228333871 CTAACCGGAAGAGCTTTGTGGAACTGC- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397952 27 - 229942017 CTAACCGGAAGAGCTTTGTGGAACTCC- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281446 27 - 143122389 CTAACCGGAAGAGCTTTGTGGAACTTC- i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223753035 28 - 227556264 CTAATCGGAAGAGCCTTGTGGAACTCCG i macFas5.chr1 T 123 C 0 s papAnu2.chr1 16803320 28 - 220367699 CTAACCGGAAGAGCTTTATGGAACTCCG i papAnu2.chr1 T 123 C 0 e mm10.chr1 178843555 8 + 195471971 I e canFam3.chr7 36425436 0 + 80974532 C e calJac3.chr19 14281695 1 - 49578535 I e rheMac3.chr1 16989759 0 - 229590362 C e chlSab2.chr25 82601701 0 + 85787240 C a score=14076.000000 s hg38.chr1_KI270759v1_alt 272363 13 + 425601 GGCAATGAGTCCA s panTro4.chr1 225029038 13 + 228333871 GGCAATGAGTCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397979 13 - 229942017 GGCAATGCGTCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281473 13 - 143122389 GGCGATGCGTCCC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223753063 13 - 227556264 GGCGATGCATCCC i macFas5.chr1 C 0 I 82 s papAnu2.chr1 16803348 13 - 220367699 GGCGATGTATCCC i papAnu2.chr1 C 0 I 82 s canFam3.chr7 36425436 13 + 80974532 GGCAGATCGTTTA i canFam3.chr7 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e calJac3.chr19 14281695 1 - 49578535 I e rheMac3.chr1 16989759 0 - 229590362 C e chlSab2.chr25 82601701 0 + 85787240 C a score=926.000000 s hg38.chr1_KI270759v1_alt 272376 1 + 425601 C s panTro4.chr1 225029051 1 + 228333871 C i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397992 1 - 229942017 C i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281486 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989759 1 - 229590362 T i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223753158 1 - 227556264 T i macFas5.chr1 I 82 C 0 s papAnu2.chr1 16803443 1 - 220367699 T i papAnu2.chr1 I 82 C 0 s chlSab2.chr25 82601701 1 + 85787240 T i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36425449 1 + 80974532 C i canFam3.chr7 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e calJac3.chr19 14281695 1 - 49578535 I a score=622196.000000 s hg38.chr1_KI270759v1_alt 272377 192 + 425601 TCTCCCCAGTCTCCCTGTCTACG-AATAGAACTTGGCCCAGTGAGTCACTGA------CTCAACTTCT---G----TGATCTTCTACTAGACGATATGGTTTAGAAATTCATAAGATGTGTGTCAGGAGTTAACAGGTTTAGGGGAAAGAACAGAAGAGGCGGAGGAATGTCTCCCCATGAATGCTGACCCTCCACATACCCAGAA s panTro4.chr1 225029052 192 + 228333871 TCTCCCCAGTCTCCCTGTCTACG-AATAGAACTTGGCCCAGTGAGTCACTGA------CCCAACTTCT---G----TGATCTTCTACTAGACGATATGGTTTAGAAATTCATAAGATGTGTGTCAGGAGTTAACAGGTTTAGGGGAAAGAACAGAAGAGGCGGAGGAATGTCTCCCCATGAATGCTGACCCTCCACATACCCAGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226397993 192 - 229942017 TCTCCCCAGTCTCCCTGTCTACG-AATAGAACTTGGCCCAGTGAGTCACTGA------CTCAACTTCT---G----TGATCTTCTACTAGACGCTATGGTTTAGAAATTCATAAGATGTGTGTCAGGAGTGAACAGGTTTAGGGGAAAGAACAGAAGAGGCAGAGGAATGTCACCCCATGAATGCTGACCCTCCACATACCCAGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281487 192 - 143122389 TCTCCCCAGTCTCCCTGCCTACG-AATAGAACTTGGCCCAGTGAGTCACTGA------CTCAACTTCT---G----TGATCTTCTACTAGACGATATGGTTTAGAAATTCATAAGATGTGTGTCAGGAGTTAACAGGTTTAGGGGAAAGAACAGAAGAGGCGGAGGAATGCCTCCCCATGAATGCTGACCCTCCACATACCCAGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989760 198 - 229590362 TCTCGCCAGTCTCCCTGTCTACA-AATAGAACCTGGCCCAGTGAGTCACTAATGCAACCTCAACATCT---G----TGATCTTCTACTAGACGATATGGTTTAGAAATTCATAAGATGTGTGTCAGGAGTTAACAGGTTTAGGGGAGAGAACAGAAGAGGCGGAGGAATGTCTCCCCATGAATGCTGACCCCCCACATGCCCAGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223753159 198 - 227556264 TCTCGCCAGTCTCCCTGTCTACA-AATAGAACCTGGCCCAGTGAGTCACTAACGCAACCTCAACATCT---G----TGATCTTCTACTAGACGATATGGTTTAGAAATTCATAAGATGTGTGTCAGGAGTTAACAGGTTTAGGGGAGAGAACAGAAGAGGCGGAGGAATGTCTCCCCATGAATGCTGACCCCCCACATGCCCAGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803444 198 - 220367699 TCTAGCCAGTCTCCCTGTCTACG-AATAGAACCTGGCCCAGTGAGTCACTAACGCAACCTCAACATCT---G----TGATCTTCTACTGGACGATATGGTTTAGAAATTCATAAGATGTGTGTCAGGAGTTAACAGGTTTAGGGGAGAGAACAGAAGAGGCGGAGGTATGTCTCCCCATGAATGCAGACCCCCCACATGCCCAGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601702 198 + 85787240 TCTCGCCAGTCTCCCTGTCTATG-AATAGAACCTGGCCCAGTGAGTCACTAATGCAACCTCAACATCT---G----TGATTTTCTACTAGACGATATGGTTTAGAAATTCATAAGATGTGTGTCAGGAGTGAACAGGTTTAGGGGAGAGAACAGAAGAGGCGGAGGAATGTCTCCCCATGAATGCTGACCCCCCACATGCCCGGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14281696 193 - 49578535 TCTGCCCAGCCTCCCTGTCTACG-AATAGAACCTGGCCCAGTGA-TCACTGA------GTCAGCTTCTGTGG----TGATCTGCTACTAAATGATATGGTTTAGAAATTCATAAGATGTGTGTCAGGAGCTGACAGGTTTAGGGGAGAGAACAGAA-AGGCGGAAGAATGTCTCCCCATGAATGCTGACCCTCCACATACCCAGAA i calJac3.chr19 I 1 I 4 s canFam3.chr7 36425450 158 + 80974532 -----------------CCTATGCAGTAGAATCCCACCCCGTGATTCACTGA------CTGAACTTCT---GCACATGAACTTTCGCCAGGCAAAGTGTCCTAGAAACTCATAAGATCTGTGTCCAGAGTGAACAGACTTGGGG----GACTACAAGGGGCAGAGGAGTGTTT-----TGCATGC-------------GCCCAGAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I a score=92584.000000 s hg38.chr1_KI270759v1_alt 272569 30 + 425601 CCTGGGACTAGCCCCTTGGCAAAGACTCCA s panTro4.chr1 225029244 30 + 228333871 CCTGGGACTAGCCCCTTGGCAAAGACTCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226398185 30 - 229942017 CCTGGGACTAGCCCCTTGGCAAAGACTCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281679 30 - 143122389 CCTGGGACTAGCCCCTTGGCAAAGACTCCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989958 30 - 229590362 CCTGGGACTAGCCCCTTGGCAAAGACTCCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223753357 30 - 227556264 CCTGGGACTAGCCCCTTGGCAAAGACTCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803642 30 - 220367699 CCTGGGACTAGCCCTTTGGCAAAGACTCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601900 30 + 85787240 CCTGGGACTAGTCCCTTGGCAAAGACTCCA i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36425608 29 + 80974532 -CCCGGGCTAGCCCCACGGCAGAGGCTCCA i canFam3.chr7 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I e calJac3.chr19 14281889 4 - 49578535 I a score=2610237.000000 s hg38.chr1_KI270759v1_alt 272599 769 + 425601 TGAGCCTCATACAGTGAATGGGACTCGTTCTCAGCCAGGTAGACATCAGCTTGGGTCTGACCCCCATCCTTGTGTGCAAGTCCTGATTCACAGAGTTTCTTTGGCACTTTTGCTTAAGCTGTAACAAACAGCCAGTCTGCACAGGGCTCCCTTCTGTCTTTCCCTTTAAGTCGGC-TCACATTTCTCTCCTGGTCACAGCTGTAGAGGACACACACAGCACGAAACATGAGGAGTGTGGCAAGTAATGAATGCCCCCAGGGTATTGCCACTTTCTGACAGATGAGGACAAATGTAATTTCCAGGGATTTCATAGCTGAGAGATTAGAAGCTTTCCTGCTGGGCCTAATTCTGGAGCCAGGTATGAACCTGTGTTTCCCTTGTATAAAGG-TAAAAGAATTCTGTTACTGGGGCTGTGGATGGAGCCGATTTTAACATTTGTTTTTTGAGCTCCATCT--------------ATAGCTCGT-AAGGTCCACCAGGCTGGTCCAAGGTGCCTTTCCTCTAGACACAGGATTTCATTTAGTGGCTGTGCCTACATGCAAAGCAGCAACTTCATTCAACTCTCTGGGTC-TTTGTCTTAGTGATGCCAGAAATAACAAAATAGAAACTGAACTATTACATGAAATGACTTTTGGGTTGGAAAAACAGGCTC-TAAGAACAGAGTTAATGAACTGAGAGAAAATAGTTTCTGGTTATGCTACTAGAAACTGTGGTTTTTATCCTCATAAATCATTGCTTTAGG--GAAAAAAA--GTCCTTTCTAAACTTTTCCTGT s panTro4.chr1 225029274 766 + 228333871 TGAGCCTCATACAGTGAATGGGACTCGTTCTCAGCCAGGTAGACATCAGCTTGGGTCTGACCCCCATCCTTGTGTGCAAGTCCTGATTCACAGAGTTTCTTTGGCACTTTTGCTTAAGCTGTAACA----GCCAGTCTGCACAGGGCTCCCTTCTGTCTTTCCCTTTAAGTCGGC-TCACATTTCTCTCCTGGTCACAGCTGTAGAGGACACACACAGCACGAAACATGAGGAGTGTGGCAAGTAATGAATGCCCCCAGGGTATTGCCACTTTCTGACAGATGAGGACAAATGTAATTTTCAGGGATTTCATAGCTGAGAGATTAGAAGCTTTCCTGCTGGGCCTAATTCTGGAGCCAGGTATGAACCTGTGTTTCCCTTGTATAAAGG-TAAAAGAATTCTGTTACTGGGGCTGTGGATGGAGCCGATTTTAACATTTGTTTTTTGAGCTCCATCT--------------ATAGCTCGT-AAGGTCCACCAGGCTGGTCCAAGGTGCCTTTCCTCTAGACACAGGATTTCATTTAGTGGCTGTGCCTACATGCAAAGCAGCAACTTCATTCAACTCTCTGGGTC-TTTGTCTTAGTGATGCCAGAAATAACAAAATAGAAACTGAACTATTACATGAAATGACTTTTGGGTTGGAAAAACAGGCTC-TAAGAACAGAGTTAATGAACTGAGAGAAAATAGTTTCTGGTTATGCTACTAGAAACTGTGGTTTTTATCCTCATAAATCATTGCTTTAGG--AAAAAAAA-AGTCCTTTCTAAACTTTTCCTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226398215 769 - 229942017 TGAGCCTCATGCAGTGAATGGGACTCGTTCTCAGCCAGGTAGACATCAGCTTGGGTCTGACCCCCATCCTTGTGTGCAAGTCCTGATTCACAGAGTTTCTTTGGCACTTTTGCTTAAGCTGTAACAAACAGCCGGTCTGCACAGGGCTCCCTTCTGTCTTTCCCTTTAAGTCGGC-TCACATTTCTCTCCTGGTCACAGCTGTAGAGGACACACACAGCACGAAACGTGAGGAGTGTGGCAAGTAATGAATGCCCCCAGGGTATTGCCACTTTCTGACAGATGAGGACAAATGTAATTTCCAGGGATTTCATAGCTGAGAGGTTAGAAGTTTTCCTGCTGGGCCTAATTCTGGAACCAGGTATGAACCTGTGTTTCCCTTGTATAAAGG-TAAAAGAATTCTGTTACTGGGGCTGTGGATGGAGCCGATTTTAACATTTGTTTTTTGAGCTCCATCT--------------ATAGCTCGT-AAGGTCCACCAGGCTGGTGCAAGGTGCCTTTCCTCTAGACACAGGATTTCATTTAGTGGCTGTGCCTACATGCAAAGCAGCAACTTCATTCTACTCTATGGGTC-TTTGTCTTAGTGATGCCAGAAATAACAAAATAGAAACTGAACTATTACATGAAATGACTTTTGGGTTGGAAAAACAGGCTC-TAAGAACAGAGTTAATGAACTGAGAGAAAATAGTTTCTGGTTACGCCACTAGAAACTGTGGTTTTTATCCTCATAAATCATTGCTTTGGG--AAAAAAAA--GTCCTTTCTAAACTTTTCTTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140281709 785 - 143122389 TGAGCCTCATACAGTGAATGCGACTCGTTCTCAGCCAGGTAGACATCAGCTTGGGTCTGACCCCCATCCTTGTGTGCAAGTCCTGATTCACAGAGTTTCTTTGGCACTTTTGCTTAAGCTGTAACAAACAACCAGTCTGCACAGGGCTCCCTTCTGTCTTTCCCTTTAAGTCGGC-TCACATTTCTCTCCTGGTCACAGCTGTAGAGGACACACACAGCACGAAACGTGAGAAGTGTGGCAAGTAATGAATGCCCCCAGGGTATTGCCACTTTCTGACAGATGAGGACAAATGTAATTTCCAGGGATTTCATAGCTGAGAGATTAGAAGTTTTCCTGCTGGGCCTAATTCTGGAGCCAGGTATGAACCTGTGTTTCCCTTGTATAGAGG-TAAAAGAATTCTGTTACTGGGGCTGTGGATGGGGCCGATTTTAACAtttgttttttttttttttttttttttttttttttAATAGCTCGT-AAGGTCCACCAGGCTGGTCCAAGGTGCCTTTCCTCTAGACACAGGATTTCATTTAGTGGCTGTGCCTACATGCAAAGCAGCAACTTCATTCAACTCTCTAGGTC-TTTGTCTCAGTGATGCCAGAAATAATAAAATAGAAACTGAACTATTACATGAAATGACTTTTGGGTTGGGAAAAGAGGCTC-TAAGAACAGAGTTAATGAACTGAGAGAAAATGGTTTCTGGTTAGGCTACTAGAAACTGTGGTTTTTATCCTCATAAATCATTGCTTTAGG--AAAAAAAAAAGTCCTTTCTAAACTTTTCCTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16989988 770 - 229590362 TGAGGCTCATATAGTAAGTGTGACTCGTTCTCACCCAGGTAGACATCAACTTGGGTCTGACCTCCACCCTTGTGTGCAAGTCCTGATTCACAGAGTTTCTTTGGCACTTTTGCTTCAGCTGTAACAAATAGCCAGTCTGCACAGGGCTCCCTTCTGTCTTTCCCTTTAAGTCGAC-TCACATTTCTCTCCTGGTCACAGCTGTAGAGGACACACATAGCACGAAACGTGAGAAGTGTGGCAAGTAATGAATG-CCCCAGGGTATTGCCACTTTCTGACAGATGAGGACAAATGTAATTTCCAGGGATTTCATAGCTGAGAGATTAGAAGTTTTCCTGCTGGGCCTAATTCTGGAGCCAGGTATGAACCTGTGTTTCCCTTCTATAAAGG-TAAGAGAATTCTGTTACTGAGGCTGTGGATGGAGCCGATTTTAACATTTGTTTTTTGAGCTCCATCT--------------ATAGCTCTTAAGGGTCCACCAGGCTGGTCCAAGGTGCCTTTCCTCTAG--ACAGGATTTCATTTAGTGGCTGTGCCTACATGCAAAGCAGCAACGTCATTCAACTCTCTGAGTC-TTTGTCTTAGTGATGCCAGAAATAACAAAATAGAAACTGAACTATTACATGAAATGACTTTTGGGTTGGAAAAACAGACTCTTAAGAACAGAGTTAATGAACTGAGAGAAAATAGTTTCTGGTTATGCTACTAGAAACTGTGGTTTTTATCCTCATAAATCATTGCTTTAGG-AAAAAAAAA-AACCCTTTTTAAACTTTTCCTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223753387 770 - 227556264 TGAGGCTCATATAGTAAGTGTGACTCGTTCTCACCCAGGTAGACATCAACTTGGGTCTGACCTCCACCCTTGTGTGCAAGTCCTGATTCACAGAGTTTCTTTGGCACTTTTGCTTCAGCTGTAACAAATAGCCAGTCTGCACAGGGCTCCCTTCTGTCTTTCCCTTTAAGTCGAC-TCACATTTCTCTCCTGGTCACAGCTGTAGAGGACACACATAGCACGAAACGTGAGAAGTGTGGCAAGTAATGAATG-CCCCAGGGTATTGCCACTTTCTGACAGATGAGGACAAATGTAATTTCCAGAGATTTCATAGCTGAGAGATTAGAAGTTTTCCTGCTGGGCCTAATTCTGGAGCCAGGTATGAACCTGTGTTTCCCTTCTATAAAGG-TAAGAGAATTCTGTTACTGAGGCTGTGGATGGAGCCGATTTTAACATTTGTTTTTTGAGCTCCATCT--------------ATAGCTCTTAAGGGTCCACCAGGCTGGTCCAAGGTGCCTTTCCTCTAG--ACAGGATTTCATTTAGTGGCTGTGCCTACATGCAAAGCAGCAACGTCATTCAACTCTCTGAGTC-TTTGTCTTAGTGATGCCAGAAATAACAAAATAGAAACTGAACTATTACATGAAATGACTTTTGGGTTGGAAAAACAGACTC-TAAGAACAGAGTTAATGAACTGAGAGAAAATAGTTTCTGGTTATGCTACTAGAAACTGTGGTTTTTATCCTCATAAATCATTGCTTTAGGAAAAAAAAAA-AACCCTTTTTAAACTTTTCCTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16803672 765 - 220367699 TGAGCCTCATACAGTAAGTGCCAGTCATTCTAACCCAGGTAGACATCAGCTTGGGTCTGCCCTCCACCCTTGTGTGCAAGTCCTGATTCACAGAGTTTCTTTGGCACTTTTGCTTCAGCTGTCACAAATAGCCAGTCTGCACAGGGCTCCCTTCTGTCTTTCCCTTTAAGTCGAC-TCACATTTCTCTCCTGGTCACAGCTGTAGAGG--ACACAGAGCACGAAACGTGAGAAGTGTGGCAAGTAATGAATG-CCCCAGGGTATTGCCACTTTCTGACAGATGAGGACAAATGTAATTTCCAGGGATTTCATAGCTGAGAGATTAGAAGTTTTCCTGATGGGCCTAATTCTGGAGCCAGGTATGAACCTGTGTTTCCCTTCTATAAAGG-TAAGAGAATTCTGTTACTGGGGCTGTGGATGGAGCCGATTTGAACATTTGTTTTTTGAGCTCCATCT--------------ATAGGTCGC-AGGGTCCACCAGGCTGGTCCAAGGTGCCTTTCCTCTAG--ACAGGATTTCATTTAGTGGCTGTGCCTACATACAAAGCAGCAACCTCATTCAACTCTCTGAGTC-TTTGTCTTAGTGATGccagaaataacaaaatagaaactgAACTATTACATGAAATGACTTTTGGGTTGGAAAAACAGACTC-TAAGAACAGAGTTAATGAACTGAGAGAAAATAGTTTCTGGTTATGCTACTAGAAACTGTGGTTTTTATCCTCATAAATCAttgctttagg--aaaaaaaa-agccctttttaaacttttcctgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82601930 767 + 85787240 TGAGCCTCATCCAGTAAGTGTGACTCGTTCTCACCCAGGTAGACATCAGCTTGGGCCTGACCTCCACCCTTGTGTGCAAGTCCTGATTCACAGAGTTTCTTTGGCACTTTTGCTTCAGCTGTAACAAATAGCCAGTCTGCACAGGGCTCCCTTCTGTCTTTCCCTTTAAGTAGAC-TCACATTTCTCTCCTGGTCACAGCTGTAGAGGACACACATAGCACGAAACGTGAGAAGTGTGGCAAGTAATGAATG-CCCCAGGGTATTGCCACTTTCTGACAGATGAGGACAAATGTAATTTCCAGGGATTTCATAGCTGAGACATTAGAAGTTTTCCTGCTGGGCCTAATTCTGGAGCCAGGTATGAACCTGTGTTTCCCTTCTATAAAGG-TAAGAGAATTCTGTTACTGGGGCTGTGGATGGAGCCGATTTTAACATTTGTTTTTTGAGCTCCATCT--------------ATAGCTGGT-AGGGTCCACCAGGCTGGTCCAAGGTGCCTTTCCTCTAG--ACAGGATTTCATTTAGTGGCTGTGCCTGCATGCAAAGCAGCAACGTCATTCAACTCTCTGAGTC-TTTGTCTTAGTGATGCCAGAAATAACAAAATAGAAACTGAACTCTTACATGAAATGACTTTTGGGTTGGAAAAACAGACTC-TAAGAACAGAGTTAATGAACTGAGAGAAAATAGTTTCTGGTTATGCTACTAGAAACTGTGGTTTTTATCCTCATAAATCATTGCTTTAGG--GAAAAAAA-AGCCCTTTTTAAACTTTTCCTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14281893 764 - 49578535 TGTGCCTCATAGAGTGAGTACGA-TCGTT-TCAGCCAGGTAGACATCAGCTTGGGTCTGAGCTCCATGCTTGTGTGCAAGTCCTGATTTACAGAGTTTCTTTGGCACTTTCGTGTAAGCTGTAGCA-ACAGCCGATCAGCACAGGGCTCCCTTCTGTCTTTTCCTTTAAGTCGGC-TCACATTTCTCTCCTGGTCACAGCTGCAGAGGACACGCACAGCACGCAATGTGAGGAGTGTGGCAGGTAATGAGCG-CCCCAGGGTATTGCCACTTTCTGACAGATGAGGACAAATGTAATTTCCAGGGATTTCATAGCTGAGAGATTAGAAGTTTTCCTGCTGGGCCTAATTCCAGAGCCAGGTATGAACCTGTGTTTCCCTTGAATAAAGG-GAAGAGAATTCTGTGACTGGGGCTGTGGATGGAGCCAATTTTAACATTCGTGTTTTGAGCTCTATCG--------------ATAGCTTGC-AGGGTCCGCCAGGCAGGTCCAAGGCACCTTTCCTCTAGACACAGGGTTTCATTTCGTGGCTGTGCCTACATGCAAAGCAGCCGCTTCATTCAACCCTCTGAGTC-TTTGTCTCAGTGGTGCCAGAAATAACAAGATAGAGACTGAACGATGACATGAAATGACTTTTGGG-TGGAAAAACGGGCTC-TAAGAACAGAGTTAATGAGCTGAGAGAAAATAGTTT-TGGTTGGGCCACTAGAAGCTGTGGTTTTCATCCTCATAAATCATTGCTTTAGG--GGAAAAAA-GGGCCTTTATAAACTTTTCCTGT i calJac3.chr19 I 4 C 0 s canFam3.chr7 36425637 744 + 80974532 -----------TAGAGAGCAAGACTCATTCTCAGCCGGGTGGACACCGGC-TGGCCCTGGTCTCCTTCGTCTTGTGCAGGTCTCGAGTCACACAGTTTCTTTTGCACTTTTTCCTAA-CTGTAACAAACATCCAGTTTGTATAGGGCTCTC-TCTGTCTTTTCCTTTCAATCTCTGTCCCTTCTCATTGCTGGCCACAGTCTTGGAGCACATCTATAATCCAATGTGTGTGGAGTGTGGCAGATAATGAATG-CCACAGGGTATTGCAACTTTCTGAAGGAGGAGGACAGATATAAGCACCAGGGATCTCGTGGGTGAGAGATCAGAAGTTTCCATGCTGG---TGATACTGGG--CTGGTGTGAACCTGGGTTTCCACGGTGGAAAGGTTAAAAAAGTCCCACCGTCGGGGCTCTGGATGAAAGCCATCCTAACATCTCTTTACTGAGCTCTGACG--------------TTGACGCCA-AGGCTCCATGGAGAGGGTCCGAGATGACTTTCCTCTAAACACAGGATTTCATTAGATGGTTGTGCCTACAGGCAAAGCAAAAATTTCATGCGGCTTTCCTAGTCTTTTGTTTAAATGATGCCAGAAATATTGAAATTGAAAC--AAATTTTGCATGAAGTTGCTTTCAGG-GAGTTAAATAGGCTC-CAGGAACAGAGTTAATGAACCAAAGGAAAACAGGTTCTGGTTATGCTACTAGAAATTGGGGTTTT-ATTCTAATAAATCATTGCTTTAGA------GAAA-AGTCCTTTCTAAAC-TTCCCTGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178843555 8 + 195471971 I a score=915734.000000 s hg38.chr1_KI270759v1_alt 273368 247 + 425601 CCTGTTTCCTTTTCATTTTTTGAA------TGAATGAACAGTAGGGTATTCTCTG--TCTT--TGAGTTATTTTCTTCCTAGCCACCTGGTCATAATCCAGAGGGAAAAACAAATTAGATGGATTCTGTGAGCTATATTTCATTG----CTATTGGTGTGTGGATCACAATGCTTTATTTTCCACCAGTTAAACGAAGAACATTCTGGAAACTTTGCACAAA------------------------------GAAAAATTAGTGTTTATCCCTACAGTTGAAATTTTCTAG s panTro4.chr1 225030040 247 + 228333871 CCTGTTTCCTTTTCATATTTTGAA------TGAATGAACAGTAGGGTATTCTCTG--TCTT--TGAGTTATTTTCTTCCTAGCCACCTGGTCATAATCCAGAGGGAAAAACAAATTAGATGGATTCTGTGAGCTATATTTCATTG----CTATTGGTGTGTGGATCACAATGCTTTATTTTCCACCAGTTAAACGAAGAACATTCTGGAAACTTTGCACAAA------------------------------GAAAAATTAGTGTTTATCCCTACAGTTGAAATTTTCTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226398984 247 - 229942017 CCTGTTTCCTTTTCATTTTTTGAA------TGAATGAACAGTAGGGTATTCTCTG--TCTT--TGAGCTATTTTCTTCCTAGCCACCTGGTCATAATCCAGAGGGAAAAACAAATTAGATGGATTCTGTGAGCTATATTTCATTG----CTATTGGTGTGTGGATCACAATGCTTTATTTTCCACCAGTTAAAGGAAGAACATTCTGGAAACTTTGCCCAAA------------------------------GAAAAATTAGTGTTTATCCCTACAGTTGAAATTTTCTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140282494 251 - 143122389 CCTGTTTCCTTTTCATTTTTTGAA------TGAATGAACAGTAGGGTATTCTCTG--TCTT--TGAGTTATTTTCTTCCTAGCCACCTGGTCATAATCCAGAGGGAAAAACAAATTAGATGGATTCTGTGAGCTATATTTCATTGCTATCTATTGGTGTGTGGATCACAATGCTTTATTTTCCACCAGTTAAAGGAAGAACATTCTGGAAACTTTGCACAAA------------------------------GAAAAATTAGTGTTTATCCCTACAGTTGAAATTTTCTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16990758 247 - 229590362 CCTATTTCCTTTTTATTTTTTGAA------TGAATGAACAGTACGGTATTGTCTG--TCTT--TGAGTTATTTTCTTCCTAGCCACCTGGTCATAATCCAGAGGGAAAAACAAATTAGATGTATTCTGCTAGCTATATTTCATTG----CTCTTGGTGTGTGGATCACAATGCTTTATTTTCCACCAGTTAAAGGAAGAACATTCTGGAAACTTTGCACAAA------------------------------GAAAAATTAGTGTTTATTCCTACAGTTGAAATTTTCTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223754157 247 - 227556264 CCTATTTCCTTTTTATTTTTTGAA------TGAATGAACAGTACGGTATTGTCTG--TCTT--TGAGTTATTTTCTTCCTAGCCACCTGGTCATAATCCAGAGGGAAAAACAAATTAGATGTATTCTGCTAGCTATATTTCATTG----CTCTTGGTGTGTGGATCACAATGCTTTATTTTCCACCAGTTAAAGGAAGAACATTCTGGAAACTTTGCACAAA------------------------------GAAAAATTAGTGTTTATTCCTACAGTTGAAATTTTCTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16804437 247 - 220367699 cctatttcctttttattttttgaa------tgaatgaacagtaGGGTATTCTCTg--tctt--tgagttattttcttcctAGCCACCTGGTCATAAtccagagggaaaaataaattagatggaTTCTGCGAGCTACATTTCATTA----CTATTGGTGTGTGGATCACAATGCTTTATTTTCCACCAGTTAAAGGCAGAACATTCTGGAAACTTTGCACAAA------------------------------GAAAAATTAGTGTTTATTCCTACAGTTgaaattttctag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82602697 247 + 85787240 CCTATTTCCTTTTTATTTTTTGAA------TGAATGAACAGTACGGTATTCTCTG--TCTT--TGAGTTATTTTCTTCCTAGCCACCTGGTCATAATCCAGAGGGAAAAACAAATTAGATGGATTCTGCAAGCTATATTTCAATG----CTATTGGTGTGTGGATCACAATGCTTTATTTTCCACCAGTTAAAGGAAGAACATTCTGGAAACTTTGCACAAA------------------------------GAAAAATTAGTGTTTATTCCTACAGTTGAAATTTTCTAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14282657 243 - 49578535 CCAATTTCCTTTTTCTTTTTTGAA------TGAGGGAACAGGAGGG-----CCTG--TCTTCCTGAGTTATTTTCTTCCTAGCAACCCGGTCATAATCCAGAGGGAAAAACACATTAGATGGACTCTGTGAG-TATATTTCATTG----CCACTGGTGTGTGGATCACAGTGCTCTAATTTCCACCAGATAAAGGAAGAACATTCTGGAAACTTTGCACAAA------------------------------GAAAAATTAGTTTTTATCCCTACCGTTGAAATTTTCTAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178843563 244 + 195471971 CCTAGTGTTTGCTCATTTTTAAAAATTCTTTGAGTGAACAGCATTG---TCTGTG--TTTC--TGACTTACTTCTTTGCCAAACATTTGGTTCTAATCC--AGGGGAGAACAAATTAGAT---------------TAATTCACTG----CCATTGGCCCATGGATCATAATT-------------------GGAGAAGAACATCCTAGAACCTTTGCACAAAATAAATAAGTGAATGACTAGTTAACTGAATGAATGATTTGTATTCACCTCTACAGTTGGAAGGCTGTAG i mm10.chr1 I 8 C 0 s canFam3.chr7 36426381 244 + 80974532 GCTATTTCTTTTTTATTCTC----------TGAATGAACAGTGGGGTAGTCTCTGCATTTC--TCAGTTTGTTTCGTCCCAGCCACCTGGTCGTAATCCAGAGGGAAAAACAAATGAGATTGATTCTGTGAGCCACACCTCATTG----CCATC-ACACACGGACCATAATGCTTGGTTCTCCACGAAACAAATGAAGAACATTCTGGAAATTTTGCACAAC------------------------------CACAACCTCACGTTTATCTCTACAGTTGAAATTTCCTAG i canFam3.chr7 C 0 C 0 a score=15687.000000 s hg38.chr1_KI270759v1_alt 273615 4 + 425601 GAAA s panTro4.chr1 225030287 4 + 228333871 GAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226399231 4 - 229942017 GAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140282745 4 - 143122389 GAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16991005 4 - 229590362 GAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223754404 4 - 227556264 GAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16804684 4 - 220367699 gaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82602944 4 + 85787240 GAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14282900 4 - 49578535 GAAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178843807 4 + 195471971 GAGA i mm10.chr1 C 0 I 1108 e canFam3.chr7 36426625 0 + 80974532 C a score=515056.000000 s hg38.chr1_KI270759v1_alt 273619 199 + 425601 AAAAAA-TAGCAACAAATTAAGTTTTGAAAAAGGAGAgccaggtgcagtagggtgcatctgtagtcccagctactcaggaggctgaggcgggaggaccactgcagcccaggagttcaaggctgcagtgagctatgattgtaccactgcactccagcctgagcgacagagctagactctgtctctaaaaaaagaaaattta s panTro4.chr1 225030291 200 + 228333871 AAAAAAATAGCAACAAATTAAGTTTTGAAAAAGGAGAgccaggtgcagtagggtgcatctgtagtcccagctactcaggaggctgaggcgggaggaccactgcagcccaggagttcaaggctgcagtgagctatgattgtaccactgcactccagcctgagtgacagagctagactctgtctctaaaaaaagaaaattta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226399235 198 - 229942017 AAAAA--TAGCAACAAATTAAGTTTTGAAAAAGGAGAgccaggcgcagtagggtgcatctgtagtcccagctactcaggaggctgaggcgggaggagcactgcagcccaggagttcaaggctgcagtgagctatgattgtaccactgcactccagcttcagcaacagagctagactctgtctctaaaaaaagaaaattta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140282749 199 - 143122389 AAAAAA-TAGCAACAAATTAAGTTTTGAAAAAGGAGAgccaggcgcagtagggtgcatctgtagtcccagctactcaggaggctgaggcgggaggaccactgcagcccaggagttcaaggctgcagtgagctatgattgtaccactgcactccagcctgagcgacagagccagactctgtctctaacaaaagaaaattta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16991009 176 - 229590362 AAAAGAAAAGCAACAAATTAAGTTTTGAAAA------------------AGGgtgcatctgtagtcccagctactcaggaggctgaggcaggcggaacactggagcccaggagttcaaggctgcagtgagctatgattgtaccactgcactccagcctgagcaacagagccaga------ctctaaaaaaataaaTTTTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223754408 176 - 227556264 AAAAGAAAAGCAACAAATTAAGTTTTGAAAA------------------AGGgtgcatctgtagtcccagctactcaggaggctgaggcaggcggaccactggagcccaggagttcaaggctgcagtgagctatgattgtaccactgcactccagcctgagcaacagagccaga------ctctaaaaaaataaaTTTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16804688 182 - 220367699 aaaagaaaagcaacaaattGAGTTTTGAAAA------------------Agggtgcatctgtagtcccagctactcaggaggctgaggcaggcagaccactggagcccaggagttcaaggctgcagtgagctataattgtaccactgcactccatcctgagcaacagagccagactctgtctctaaaaaaataaatttta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82602948 180 + 85787240 AAAAGAAAAGCAACAAATTAAGTTTTGAAAA------------------AGGGTTCATctgtagtcccagctactcaggaggctgaggcaggcagaccactggagcccaggagttcaaggctgcagtgagctatgattgtaccactgcactccagcctgagcaacagagccaga--ctgtctctaaaaaaataaaTTTTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14282904 197 - 49578535 AATA---TAGCAACAAATTAGGCTTTGAAAAAGGAGAGGcaggcgcagtagggtgcatctgtagccctagctactcgggaggctgaggcgggaggcccactggagcccaggaggtcaaggctgccgggagctctgattgcaccactgcactccagcctgagcaacagtgccagactctgcctctaaaaaaggaaaTGTTC i calJac3.chr19 C 0 C 0 e mm10.chr1 178843811 1108 + 195471971 I e canFam3.chr7 36426625 0 + 80974532 C a score=665759.000000 s hg38.chr1_KI270759v1_alt 273818 335 + 425601 aaaaGGAGGCTTggctgggtgcagtggctcaacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcgggagttccagaccagcctaaccaacatggagaaaccccatctctactaaaaataca-----------------------aaaaacaaacaaacaaacaaaca-aacaaacaaacaaaccaaattagcccggtgtggtggcacatgcctgtaatcccagctgcttgggaggctgaggcaggagaatcacttgaacctggaaggtggaggttgcggtgagccgagattgcgccattgcactccagcctgggcaacaagagtgaaacttcatctca s panTro4.chr1 225030491 319 + 228333871 aaaaGGAGGCTTggctgggtgcggtggctcaatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcgggagttccagaccagcctaaccaacatggagaaaccccatctctactaaaaataca-----------------------aaaaacaaacaaacaaacaaac-----------------caaattagcccggtgtggtggcacatgcctgtaattccagctacttgggaggctgaggcaggagaatcacttgaacctggaaggtggaggttgcagtgagccaagattgcgccattgcactccagcctgggcaacaagagtgaaacttcatctca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226399433 328 - 229942017 aaaaGGAGCCTTggctgggtgcggtggctcaacgcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcgggagttccagaccagcctgaccaacatggagaaaccccgtctctactaaaaataca-----------------------aaaa--aaaaaaaccaacaacaacaacaaaaaa------caaattagcccggtgtggtggcacatgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcggtgagccgagattgcgccattgcactccagcctgggcaacaagagtgaagcttcatctca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140282948 303 - 143122389 aaaaGGAGCCTTggccaggtacagtggctcaatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcgggagttccagaccagcctgaccaacatggagaaaccccgtctctactaaaaataca-----------------------aaaaac---------------------------------aaaattagcctggtgtggtggcacgtgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaatctgggaggtggaggttgcaatgagccgagattgcgccattgcactccagcctgggcaacaagagtgaaacttcatctca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16991185 298 - 229590362 AAAAGGAGCTTTggccgggtacagtggctc-acacctataatcccagcactttgggaggccgaggtgggtggatcatctgaggtcaggagttcgagaccagcgtgaccaacatggagaagccctgtctctact--------------------------------------aaaaaaaaatt----------------------taaattagccaggcgtgatggcacatgcctgtaatcccagctacttgagaggctgaggcaggagaatcacttgaacccgggaggcggaggctgcggtgagctgagattgcgccattgcattccagcctaggcaacaagagtgaaactccatctca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223754584 310 - 227556264 AAAAGGAGCTTTggccgggtacagtggctc-acacctataatcccagcactttgggaggccgaggtgggtggatcatctgaggtcaggagttcgagaccagcgtgaccaacatggagaagccctgtctctactaaaaaa--------------------------aaaaaaaaaaaaaaaaa----------------------aaaattagccaggcgtgatggcacatgcctgtaatcccagctacttgagaggctgaggcaggagaatcacttgaacccgggaggcggaggctgcggtgagctgagattgcgccattgcattccagcctaggcaacaagagtgaaactccatctca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16804870 336 - 220367699 aaaaggagccttggccgggtgcagtggctc-acacctataatcccagcactttgggaggccgaggtgggtggatcatctgaggtcaggagttcgagaccagcgtgatcaacatggagaagccctgtctctactaaaaaaatatatatacatatatatatatatatatatatatatatatata----------------------tatattagccaggcgtgatggcacatgcctgtaatcccagctacttgagaggctgaggcaggagaatcacttgaacccgggaggcggaggctgcggtgagctgagatcgcgccattgcactccagcctaggcaacaagagtgaaactccatctca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82603128 307 + 85787240 AAAAGGAGCTTTggccgggtgcagtggctc-acacctataatcccagcactttgggaggccgaggtgggtggatcatctgaggtcaggagttcgagaccagcgtgaccaacatagagaagccctgtttctactaaa-----------------------------ataaataaataaataaa----------------------taaattagccaggcgtgatggcacatgcctgtaatcccagctacttgagaggctgaggcaggagaatcacttgaacccgggaggtggaggctgcggtgagctgagattgcgccattgcactccagcctaggcaacaagagtgaaactccatctca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178843811 1108 + 195471971 I e canFam3.chr7 36426625 0 + 80974532 C e calJac3.chr19 14283101 0 - 49578535 C a score=36327.000000 s hg38.chr1_KI270759v1_alt 274153 14 + 425601 aagaaaaaaaa--aaa s panTro4.chr1 225030810 14 + 228333871 aagaaaaaaaa--aaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226399761 14 - 229942017 aaaaaaaaaaa--aaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140283251 14 - 143122389 aaaaaaaaaaa--aaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16991483 14 - 229590362 aagaaaaaaag--aaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223754894 14 - 227556264 aagaaaaaaag--aaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16805206 16 - 220367699 aagaaaaaaagaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82603435 14 + 85787240 aagaaaaaaag--aaa i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36426625 14 + 80974532 AAGGAAAAAAA--AGA i canFam3.chr7 C 0 C 0 e mm10.chr1 178843811 1108 + 195471971 I e calJac3.chr19 14283101 0 - 49578535 C a score=797490.000000 s hg38.chr1_KI270759v1_alt 274167 274 + 425601 aaaa------------------GAGCTTTGATTTTCATGAATACCAGTC--TATTTCTGAAGGTTTCCCCCTTGGAGGAACAGTGGTGGCGGGCTGGCCCTCTCAGTCAAGGAGACGT-GAGCATTCCATGAGACACGGGTTTCCTCTAGGGTCTGCCCCTGAGGTACCTGAGGTTTGGATACCTCTGCCCACTCCCCTCTGCCATGTTTTTCCAGCTGTACCGTGCCGATAATCACTGTGTCAGCTGTCATTACCATAATGCTCTGAGCATAACTGCTGTAACAGCTGGGAAAG s panTro4.chr1 225030824 276 + 228333871 aaaa----------------aGGAGCTTTGATTTTCATGAATACCAGTC--TATTTCTGAAGGTTTCCCCCTTGGAGGAACAGTGGTGGCGGGCTGGCCCTCTCAGTCAAGGAGACAT-GAGCATTCCATGAGACACGGGTTTCCTCTAGGGTCTGCCCCTGAGGTACCTGAGGTTTGGATACCTCTGCCCACTCCCCTCTGCCATGTTTTTCCAGCTGTACCGTGCCGATAATCACTGTGTCAGCTGTCATTACCATAATGCTCTGAGCACAACTGCTGTAACAGCTGGGAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226399775 282 - 229942017 aaaaaa----------aaaaaGGAGCTTTGATTTTCATGAATACCAGTC--TATTTATGAAGGTTTCCCCCTTGGAGGAACAGTGGTGGCGGGCTGGCCCTCTCAGTCAAGGAGACGT-GAGCATTCCATGAGACACAGGTTTCCTCTTGGGTCTGCCCCTGAGGTACCTGAGGTTTGGATACCTCTGCCTACTCCCCTCTGCCGTGTTTCTCCAGCTGTACTGTGCCGATAATCACTGTGTCAGCTGTCATTACTGTAATGCTCTGAGCACAACTGCTGTAACAGCTGGGAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140283265 273 - 143122389 aaaG------------------GAGCTTTGATTTTCATAAATACCAGTC--TATTTCTGAAGGTTTCCCCCTTGGAGGAACAGTGCTGGC-GGCTGGCCCTCTCAGTCAAGGAGACGT-GAGCATTCCATGAGACACGGGTTTCCTGTAGGGTCTGCCCCTGAGGTACCTGAGGTTTGGACACCTCTGCCCACTCCCCTCTGCCGTGTTTTTCCAGCTGTACCATGCCGATAATCACTGTGTCAGCTGTCATTACCGTAATGCTCTGAGCACAACTGCTGTAACAGCTGGGAGAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16991497 279 - 229590362 aaaa--------------aaaGGAGCTTTGATTTTCATGAATACCAGTGTGTATTTCTGAAGGTTTCCCCA-TGGAGGAACAGTGGTGGCGGACTGACCCTCTCTGCCAAGGAGACAT-GAGCATTCTGTGAGACATGGGTTTCCTCTAGGGTCTGCCCCTGAGGTACCTGAGGTTTGGACACCTCTGCCCACTGCCCTCTGCCATGTTTTTCTAGTTGTACTGTGGCGATAATCACTGTGTCAGCTGTCATTACCGTAATGCTCTGAGCACAACTGCTGTAACAGCTGGGAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223754908 279 - 227556264 aaaa--------------aaaGGAGCTTTGATTTTCATGAATACCAGTGTGTATTTCTGAAGGTTTCCCCA-TGGAGGAACAGTGGTGGCGGACTGACCCTCTCTGCCAAGGAGACAT-GAGCATTCTGTGAGACATGGGTTTCCTCTAGGGTCTGCCCCTGAGGTACCTGAGGTTTGGACACCTCTGCCCACTGCCCTCTGCCATGTTTTTCTAGTTGTACTGTGGCGATAATCACTGTGTCAGCTGTCATTACCGTAATGCTCTGAGCACAACTGCTGTAACAGCTGGGAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16805222 278 - 220367699 aaaa--------------aaaggagctttgATTTTCATGAATACCAGTATGTATTTCTGAAGGTTCCCCCA-TGGAGGAGCAGTGGTGGTGGACTGACCCTCTCTGCCAAGGAGACAT-GAGCATTCTGTGAGACATGGGTTTCCTCTAGGGTCTGCCCCTGAGGTACCTGAGGTTTGGACACCTCTGCCCACTCCCCTCTGCCATGTTTTTCCAGTTGTACTGTGGCGATAATCACTGTGTCAGCTGTCATTACCGT-ATGCTCTGAGCACAACTGCTGTAACAGCTGGGAAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82603449 278 + 85787240 aaaa--------------aaaGGAGCTTTGATTTTCATGAATACCAGTGTGTATTTCTGAAGGTTCCCCCA-TGGAGGAACAGTGGTGGAGGACTGACCCTCTCTGCCAAGGAGACAT-GAGCGTTCTGTGAGACACGGGTTTCCTCTAGGGTCTG-CCCTGAGGTACCTGAGGTTTGGACACCTCTGCCCACTCCCCTCTGCCATGTTTTTCTAGTTGTACTGTGGCGATAATCACTGTGTCAGCTGTCATTACCGTAATGCTCTGAGCACAACTGCTGTAACAGCTGGGAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14283101 269 - 49578535 ------------------AAAGGAGTGCTGATTTTCATGGACACCAGTCTGTATTTCTGAAGGTTTCCCCCTTGGAGGAAGCGTGGCAGTGGGCTGGCTCTCTCCGGGAAGGGGATATGGGGTGTCCCGTGAGACAGGGGTTTCCTCCAGGGTCTGCCCCTGAGGTACCTGAGGTTTGGACACTGCCGCCCACTCCCCTCCGCCATGTTTCTCCAGCTGTACAGTGGCAATAA--------TCAGCTGTCATTACCGTAACTCACTGAGCACAACTGCTGTAACAGCTGGGAAGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36426639 238 + 80974532 AAAGAGCATATCAAGTAAAATGAAGCCTCAACTTTCATGTGTACCAGTCTGTGTTTTGGAACATTTCCGTCTTTGAGGAAGGGTTGTAGTG---------TCTC-----------CAT------CCCCATGGTGAATGG--------------------CTGGTGTGCATGAGGCCAGG---CGCTTGCTCAC------CTGCCACATTCCTCCAGCTGTAAAATGA-GGTCAGAGCTATATCCA-TGTTTTTCCAGTGATGCTCTGCACACGGCTACTGTGCCAGTGGGAAGAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178843811 1108 + 195471971 I a score=335666.000000 s hg38.chr1_KI270759v1_alt 274441 113 + 425601 AACTCTGCCTTTGCAAAACAATGCTGCGTCATAACACGCTAAAACCCCCAATGTGCCCACCCAATATTTCCTATCCATTTGCCCCTTCTGCACTCCA-CAGGCATGATCTTCCC s panTro4.chr1 225031100 113 + 228333871 AACTCTGCCTTTGCAAAACAATGCTGCGTCCTAACAGGCTAAAATCCCCAATGTGCCCACCCAATATTTCCTATTCATTTGCCCCTTCTGCACTCCA-CAGGCATGATCTTCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226400057 114 - 229942017 AACTCTGCCTTTGCAAAACAATGCTGTGTCGTAACAGGCTAAAACCCCTAATGTGCCCACCCAATATTTCCTATTCATTTGCCCCTTCTGCACTCCACCAGGCATGATCTTCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140283538 114 - 143122389 AGCTCTGCCTTTGCAAAACAATGCTGTGTCGTAACAGGCTAAAACCCCCAATGTGCCCACCCAGTATTTCCTATTCATTTGCCCCTTCTGCACTCCACCAGGCATGATCTTCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16991776 114 - 229590362 AACTATGCCTTTGCAAAACAATGCCACGTCGTAACAGGCTAAAACCCCCAATGTGCCTACCCAATATTTCCTATTCATTTGCCCCTTCTGCACTCCACCAGGCACATTCTTCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223755187 114 - 227556264 AACTCTGCCTTTGCAAAACAATGCCACGTCGTAACAGGCTAAAACCCCCAATGTGCCTACCCAATATTTCCTATTCATTTGCCCCTTCTGCACTCCACCAGGCACATTCTTCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16805500 114 - 220367699 AACTCTGCCTTTGCAAAACAATGCCACGTCGTAACAGGCTAAAACCCCCAATGTGCCTACCCAATATTTCCTATTCATTTGCCCCTGCTGCACTCCACCAGGCACGTTCTTCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82603727 114 + 85787240 AACTCTGCCTTTGCAAAACAATGCCACGTCGTAACAGGCTAAAACCCCCAATGTGCCTACCCAATATTTCCTATTCATTTGCCCCTTCTGCACTCCACCAGGCACATTCTTCCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14283370 113 - 49578535 AACTCTGCCTTTGCAAAACAACGCCGAGTCGTAGCAGGCTAAAACCCCAAA-GTGCCCACCCAGTATTTCCTAACCATTTGCCTCTTGTGCACTCCACCACGCACGTTCTTCCC i calJac3.chr19 C 0 C 0 e mm10.chr1 178843811 1108 + 195471971 I e canFam3.chr7 36426877 0 + 80974532 C a score=1154461.000000 s hg38.chr1_KI270759v1_alt 274554 396 + 425601 TTTGCCAGTGGGACATCAGAATGAGACTCTCTTCTGTCCTCCCTCTCCT-----TCCCCAAGAACAGTCCTTGCTTGCAAATGCAAACAGAGAAAAAGATACTACCCGAGTGAGCAGGTGTTTCCGTTGGGGTCTGACAGGAGAAAGAC-----------ACCACACTTAGATCggg-------------------------actatttagaaaagtatggatggagtgtagaaaatgaaaagggctaattagatagaccagggctagtcatagcagagtgccaggatggcctaggtccgaagggtcaaaaggagggaacCATGTTGGGGGGACAGAGGAAAGGAAGGTGTGGCGGAGCCTCCGGACTCGCCT-CCTCCCTccagagggcaagggggttctgctgatgcagtccaggcaggccca-ctccctggacacc s panTro4.chr1 225031213 395 + 228333871 TTTGCCAGTGGGACATCAGAATGAGACTCtcctctgtcctccctctcct-----tccccaagaacagtccttgcttgcaaatgcaaacagagaaaaagatactacctgagtgagcaggtgtttccgttGGGGTCTGACAGGAGAAAGAC-----------ACCACACTTAGATCggg-------------------------actattgagaaaagtatggatggggtgtagaaaatgaaaagggctaattagataggccagggctagtcatagcagagcgccaggatggcctaggtccgaagggtcaaaaggagggaacCATGTTGGGGG-ACAGAGGAAAGGAAGGTGTGGCGGAGCCTCCGGACTCGCCT-CCTCCCTccagagggcaagggggttctgctgatgcagtccaggcaggccca-ctccctggacacc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226400171 392 - 229942017 TTTGCCAGTGGGACATCAGAATGAGACTCTCCTCCGTCCTCCCTTCCCTTCCCCTCCCCAAGAACAGTCCTTGCTTGCAAATGCAAACAGAGAAAAAGATACTACCTGAGTGAGCAGGTGTTTCTGTTGGGGTCTGACAGGAGAAAGAC-----------ACCACACTCAAATCggg-------------------------actatttagaaaagtatgaatggagtgtagaaaatgaaaagggctaatttgataggctagggctagtcatagcagagtgccaggatggcctaggtccgaagggtcaaaaggagggaacCCTTTT---------GAGGAAAGGAAGGTGTGGCGGAGCCTCCGGAGTCGCCT-CCTCTCTccagagtgcaagggggttctgctgatgcggtccaggcaggccca-ctccctggacacc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140283652 394 - 143122389 TTTGCCAGTGGGACATCAGAATGAGACTCTCCTCTGTCCTCCCTCTCCT-----TCCCCAAGAACAGCCCTTGCTTGCAAATGCAAACAGAGAGAAAGATGCTACCTGAGTGAGCAGGTGTTTCCGTGGGCGGCTGACAGGAGAAAGAC-----------ACCACACTCAAATCGGG-------------------------ACTATTTAGAAAAGTATGGATGGAGTGTAGAAAATGAAAAGGGCTAATTAGATAGGCCAGGGCTAGTCATAGCAGAGTGCCAGGGTGGCCTAGGTCCGAAGGGTCAAAA-GAGGGAACCACGTAGGGGG-GCAGAGGAAAGGAAGGTGTGGCGGAGGCTCCGGAGTTGCCT-CCTCCCTccagagtgcaagggggttctgctgatgcggtccaggcaggccca-ctccctggacacc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16991890 394 - 229590362 TTTGCCAGTGGGACGTCAGAATGAGACTCTCCTCTCTCCTCCCTCTCCT-----TCCCCACGAACAGCTCTTGCTTGCAAATGCAAACAGAGAAAAAGATACTACCTGAGTGAGCAGGTGTTTCCCTCAGAGTCTGACAGGAGAAAGAC-----------ACCACCCTCGAATCGGG-------------------------ACTATTTAGAAAAGTATGGATGGGGTGTAGAAAATGAAAAGGGCTAATTAGACACACCAGCGCTAGTCATAGCAGAGTGCCAGGATGGCCTACCTCCAAAGGGTCAAACGGAGGGGACCATGTTGAGAG-GCAGAGGAAAGGAAGGTGTGGCAGAGCCTCTGGACTCGCCT-CCTCCCTccagagggcaagggggttctgctgatgcggtgcaggca-gccca-ctccctggacacc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223755301 394 - 227556264 TTTGCCAGTGGGACGTCAGAATGAGACTCTCCTCTCTCCTCCCTCTCCT-----TCCCCAAGAACAGCTCTTGCTTGCAAATGCAAACAGAGAAAAAGATACTACCTGAGTGAGCAGGTGTTTCCCTCAGAGTCTGACAGGAGAAAGAC-----------ACCACCCTCGAATCGGG-------------------------ACTATTTAGAAAAGTATGGATGGGGCGTAGAAAATGAAAAGGGCTAATTAGACACACCAGCGCTAGTCATAGCAGAGTGCCAGGATGGCCTAGCTCCAAAGGGTCAAACGGAGGGGACCATGTTGAGAG-GCAGAGGAAAGGAAGGTGTGGCAGAGCCTCTGGACTCGTCT-CCTCCCTccagagggcaagggggttctgctgatgcggtgcaggca-gccca-ctccctggacacc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16805614 395 - 220367699 TTTGCCAGTGGGACATCAGAATGagactctcctctctcctccctctcct-----tccccaagAACAGCTCTTGCTTGCAAatgcaaacagagaaaaagatACTACCTGAGTGAGCAGGTGTTTTCCTCAGAGTCTGACAGGAGAAAGAC-----------ACCACCCTCGAATCGGG-------------------------ACTATTTAGAAAAGTATGGATGGGGCGTAGAAAATGAAAAGGGCTAATTAGACAGGCCAGCACTAGTCATAGCAGAGTGCCAGGATGGCCTAGGTCCGAAGGGTCAAACGGAGGGAACCATGTTGAGAG-GCAGAGGAAAGGAAGGTGTGGCAGAGCCTCTGGACTCACCT-CCTCCCTCCAGAGGGCAAGGGGGTTCTGCTGATGCGGTGCAGGCAGGCCCA-CTCCCTGGACACC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82603841 395 + 85787240 TTTGCCAGTGGGACATCAGAATGAGACTCTCCTCTCTCCTCCCTCTCCT-----TCCCCAAGAACAGCTCTTGCTTGCAAATGCAAACAGAGAAAAAGATACTACCTGAGTGAGCAGGTGTTTCCCTCAGAGTCTGACAGGAGAAAGAC-----------ACCACACTCGAATCggg-------------------------actatttagaaaagtatggatggggcgtagaaaatgaaaagggctaattagacagaccagagctagtcatagcagagtgccaggatgacctagctccaaagggtcaaacggagggGACCATGTTGAGAG-GCAGAGGAAAGGAAGGTGTGGCAGAGCCTCTGGACTCGCCT-CCTCCCTccagagggcaagggggttctgctgatgcagtgcaggcaggccca-ctccctggacacc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14283483 398 - 49578535 TTTGCCAATGGAACGTCAGAATGAGACTCTCCTCTCTCCTCCCTCTCTG-----CCCACAAGAGCAGCCCTTGCTTGCAAATGCAGA-----GATAAGATACTACCTGAGTGAGCAGGTGTTCCCGTCAGACCCTGATGGGAGAAAGCCCAGGTTTCTGggagagtttcataaaggg-------------------------actattcacaaaagtgtggatgggctgtaaaaagtgaaaagggcgaattagatagcccaggg-tggttacagcagagtaccaggatgctcaaggtctgaaggatcagaaggagggagcagtGTTGGGGG--CAGAGGACAGGAAGGTGTGGCGGAGTCCCCGGCCTTGCCT-CCTCCCTCCAGGGTGCAAGGGGGTTCTGCTGACGTGGTCCAGG-AGGCACA-CTTCCTGGACACC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36426877 316 + 80974532 TTTGCCAGTGGGGTGTCAAAACTAGAGACTCCACTGTCCTCC----CCT-----TCCCTGAGAGCAGC---------CAAAGGAGCA---AGAAAAAGGTCCTGGCTG-------------------------------GAAAAAAGGT-----------ATCACACTCAAATTGGGTATTTTGCAAAAAATTGGGTAAAAAGGTGTTTACAAAAGTATTGGTCAGGTGCAGAAACCTAGAAGGG------------------------------------CCAGTGTCCCTTGGGTCTGAAGGGCCTGAGGGAGGCGGCAGTTTTCAGAG-CTAGAGCA-AGGCAAATGT-GCAGAGGCCTCGGACCTACCTGCCTCCCTCTCGTGGGC---------------------TCCAGGCaggcctgcctccctgggcacc i canFam3.chr7 C 0 C 0 e mm10.chr1 178843811 1108 + 195471971 I a score=2077087.000000 s hg38.chr1_KI270759v1_alt 274950 605 + 425601 aggagagtggaaaagggtggagactgagtctggagggcacggaggaaaatTGGCTCAGCATGGA--------TTAGAACAGTC--TTTC----------------GCTTCCTGGAGCTTAAAAGCCCTCCTTACTTACCCTTAGCTCCTGCCACCTCTCTTTGTCCT----TGGATGGATACAGCGCATGCCTCCTGCCTGCCACCTCATCTGTGGTTTCTCATCCTGTTTGCTGTCCTCCTTCCTCGTTCTGCCCATGCTGTCATAATGGATGGAAAAGCTAAAGGTGATTTCCAGTCATCTC----------------TTTTGCTGCTGACAGCATGAAGTTTGTTCTGCTATTAGAATGACGCAGACCCGAGACAAGG---GTTTTGTCCTGAGTTCATTCCATTAA-TTTCTCTCTGCATA-GAGCATCTTTC-CAGCAGCTCCTGCATGATTAAATTCTGGCTGTGTGGGACACAATGGCACAGGAAGAGCGTTGG-C-CACTCATCAGCCAGGTCACTAAAAGGCAAGTTCCACACATGAGGAGAAATCAAA-T-----------------------------------GCTCACC-------------------------------CTTTGGACATCCATCCTT----------------TTGGTCCT-TTGAGTAACATTTAAACAATTGTTTCTTCAGATACATGGTCCACACTCAAGAGACCTACAACA-------------------------GTTG s panTro4.chr1 225031608 605 + 228333871 aggagagtggaaaagggtggagactgagtctggagggcacggaggaaaatTGGCTCAGCATGGA--------TTAGAACAGTC--TTTC----------------GCTTCCTGGAGCTTAAAAGCCCTCCTTACTTACCCTTAGCTCCTGCCACCTCTCTTTGTCCT----TGGATGGATACAGCGCATGCCTCCTGCCTGCCACCTCATCTGTGGTTTCTCATCTTGTTTGCTGCCCTCCTTCCTCGTTCTGCCCATGCTGTCATAATGGATGGAAAAGCTAAAGGTGATTTCCAGTTATCTC----------------TTTTGCTGCTGACAGCATGAAGTTTGTTCTGCTATTAGAATGACGCAGACCCGAGACAAGG---GTTTTGTCCTGAGTTCATTCCATTAA-TTTCTCTCTGCATA-GAGCATCTTTC-CAGCAGCTCCTGCATGATTAAATTCTGGCTGTGTGGGACACAATGGCACAGGAAGAGCGTTGG-C-CACTCATCAGCCAGGTCACTAAAAGGCAAGTTCCACACATGAGGAGAAATCAAA-T-----------------------------------GCTCACC-------------------------------CTTTGGACATCCATCCTT----------------TTGGTCCT-TTGAGTAACATTTAAACAATTGTTTCTTCAGATACATGGTCCACACTCAAGAGACCTACAACA-------------------------GTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226400563 605 - 229942017 aggagagtggaaaagggtggagactgagtctggagggcacggaggaaaatTGGCTCAGCATGGA--------TTAGAACAGTC--TTTT----------------GCTTCCTGGAGCTTAAAAGCCCTCCTTACTTACCCTTAGCTCCTGCTACCTCTCTTTGTCCT----TGGATGGATACAGTGCATGCCTCCTGCCTGCCACCTCATCTGTAGTTTCTCATCCTGTTTGCTGCCCTCCTTCCTCATTCTGCCCATGCTGTCATAATGGATGGAAAAGCTAAAGGTGATTTCCAGTCATCTC----------------TTTTGCTGCTGACAGCATGAAGTTTGTTCTGCTATTAGAATGACGCAGACCCGAAATGAGG---GTTTTGTCCTGAGTTCATTCCATTAA-TTTCCCTCCGCATA-GAGCATCTTTC-CAGCAGCTCCTGCATGATTAAATTCTGGCTGTGTGGGACACAATGGCACAGGAAGAGCGTTGG-C-CACTCATCAGCCAGGTCACTAAAAGGCAAGTTCCACACATGAGGAGAAATCAAA-T-----------------------------------ACTCACC-------------------------------CTTTGGACATCCATCCTT----------------TTGGTCCT-TTGAGTAACATTTAAACAATTGTTTCTTCAGATACATGGTCCACACTCAAGAGACCTACAACA-------------------------GTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140284046 604 - 143122389 aggagagaggaaaagggtggagaccgagtctggagggCATGGAGGAAAATTGGCTCAGCACGGA--------TTAGAACAGTC--TTTC----------------GCTCCCTGGAGC-TAAAAGCCCTCCTTACTTACCCTCAGCTCCTGCCTCCTGTCTTTGTCCT----TGGATGGATACAGTGCATGCCTCTTGCCTGCCACCTCACCTGAGGTTTCTCATCCTGTTTGCTGCCCTCCTTCCTCGTTCTGCCCATGCTGTCATAATGGATGGAAAAGCTGAAGGTGATTTCCAGTCATCTC----------------TTTTGCTGCTGACAGCATGAAGTTTGTTCTGATATTAGAGTGACACAGACCCGAGACGAGG---GTTTTGTCCTGAGTTCATTCCATTAA-TTTCACTCCGCACA-GAGCATCCTTC-CAGCAGCTCCTGCATGATTAAATTATGGCTGTGTGGGACACAATGGCACAGGAAGAGTGTTGG-C-CACTCATCAGCCAGGTCACTAAAAGGCAAGTTCCACACATGAGAAGAAATCAAA-T-----------------------------------GCTCACC-------------------------------CTTTGGACATCCATCCCT----------------TTGGTCCT-TTGAGTAACATTTAAACAATTGTTTCTTCAGATACATGGTCCACACTCAAGAGACCTACAAGA-------------------------GTTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16992284 601 - 229590362 aggagagtggaaaagggtggagattgagtctggagggCACAGAGCAAAACTGGCTCAGCATGGA--------TGAGGACAGTC--TTTT----------------GCTCCCTGGAGC-TAAAAACCCTCGTTACTTACCCTCAGCTCCCACCACGTCTCTTTGTCCT----TGGATGGATACAGCACATGCCTCCTGCCTGCCACCTCACCTGTGGGTTCTCATCCTGTTTGCTGCCCTCCTTCCTCGTTCTGCCCATGCTGTCATAATGGATGGAAAAGCTAAAGGTGATTTCCAGTCATCGC----------------TTTTGCTGCTGACAGCATGAAGTTTGTTCTGCTATTAGAGTGACACAGACCCGAGATGAGG---GTTTTGCCCTGAATTCATTTCATTCA-TTTCCCTCTGCACA-GAGCATCTTTC-CAGCAACTCCTGCATGATTAAATTCTGGCTGTGTGAGACACAGTGGCACAGGAAGAGCGTTGG-C-CACTCATCAGCCAGGTCACTGGAAGGCAAGTTCCACACATGAGGAGAAATCAAA-T-----------------------------------GCTCACC-------------------------------CTTTGGACATCCATCCTT----------------TTGGTCCT-TTGAGTAACATTTAAACAATTGCTTTTTCAGATACATGGTCCACACTC---AGACCTACAAGA-------------------------ATTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223755695 601 - 227556264 aggagagtgcaaaagggtggagattgagtctggagggCACAGAGCAAAATTGGCTCAGCATGGA--------TGAGGACAGTC--TTTT----------------GCTCCCTGGAGC-TAAAAACCCTCGTTACTTACCCTCAGCTCCCACCACGTCTCTTTGTCCT----TGGATGGATACAGCACATGCCTCCTGCCTGCCACCTCACCTGTGGGTTCTCATCCTGTTTGCTGCCCTCCTTCCTCGTTCTGCCCATGCTGTCATAATGGATGGAAAAGCTAAAGGTGATTTCCAGTCATCGC----------------TTTTGCTGCTGACAGCATGAAGTTTGTTCTGCTATTAGAGTGACACAGACCCGAGATGAGG---GTTTTGCCCTGAATTCATTTCATTCA-TTTCCCTCTGCACA-GAGCATCTTTC-CAGCAACTCCTGCATGATTAAATTCTGGCTGTGTGGGACACAGTGGCACAGGAAGAGCGTTGG-C-CACTCATCAGCCAGGTCACTGGAAGGCAAGTTCCACACATGAGGAGAAATCAAA-T-----------------------------------GCTCACC-------------------------------CTTTGGACATCCATCCTT----------------TTGGTCCT-TTGAGTAACATTTAAACAATTGCTTTTTCAGATACATGGTCCACACTC---AGACCTACAAGA-------------------------ATTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16806009 601 - 220367699 AGGAGAGTGGAAAAGGGTGGAGACTGAGTCTGGAGGGCACAGAGCAAAATTGGCTCAGCATGGA--------TCAGGACAGTC--TTTT----------------GCTCCCTGGAGC-TAAAAACCCTCGTTACTTACCCTCAGCTCCCACCACGTCTCTTTGTCCT----TGGATGGATACAGCACATGCCTcctgcctgccacctcacctgtgGGTTCTCATCCTGTTTGCTGCCCTCCTTCCTCATTCTGCCCATGCTGTCATAATGGATGGAAAAGCTAAAGGTGATTTCCAGTCATTGC----------------TTTTGCTGCTGACAGCATGAAGTTTGTTCTGCTATTAGAGTGACACAGACCCGAGATGAGG---GTTTTGCCCtgaattcatttcattca-tttccctCTGCACA-GAGCATCTTTC-CAGCAACTCCTGCATGATTAAATTCTGGCTGTGTGGGACACAGTGGCACAGGAAGAGCGTTGG-C-CACTCATCAGCCAGGTCACTGGAAGGCAAGTTCCACACATGAGGAGAAATCAAA-T-----------------------------------GCTCACC-------------------------------CTTTGGACATCCATTCTT----------------TTGGTCCT-TTGAGTAACATTTAAACAATTGTTTTTTCAGATACATGGTCCACACTC---AGACCTACAAGA-------------------------ATTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82604236 599 + 85787240 aggagagtggaaaagtatggagattgagtctggagggCACAGAGCAAAATTGGCTCAGCATGGA--------TCAGGACAGTC--TTTT----------------GCTCCCTGGAGC-TAAAAACCCTCGTTACTTACCCTCAGTTCCCACCACG--TCTTTGTCCT----TGGATGGATACAGCACATGCCTCCTGCCTGCCACCTCACCTGTGGGTTCTCATCCTGTTTGCTGCCCTCCTTCCTCGTTCTGCCCATGCTGTCATAATGGATGGAAAAGCTAAAGGTGATTTCCAGTCATCTC----------------TTTTGCTGCTGACAGCATGAAGTTTGTTCTGCTATTAGAGTGACACAGACCCGAGATGAGG---GTTTTGTCCTGAATTCATTTCATTCA-TTTCCCTCTGCACA-GAGCATCTTTC-CAGCAACTCCTGCATGACTAAATTCTGGCTGTGTGGGACACAGTGGCACAGGAAGAGCGCTGG-C-CACTCATCAGCCAGGTCACTGGAAGGCAAGTTCCACACATGAGGAGAAATCAAA-T-----------------------------------GCTCACC-------------------------------CTTTGGACATCCATCCTT----------------TTGGTCCT-TTGAGTAACATTTAAACAATTGTTTTTTCAGATACATGGTCCACACTC---AGACCTACAAGA-------------------------ATTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14283881 585 - 49578535 AGGAGAGTGGAAAAGGG-GGAGACTGAGGCTGGAGGGCA--GAGGAAAACTGTCTCAGCAGGGA--------TCAGAGCAGTC--TTTCAAAAGAGCCCT-CCTGGCTCCCCCGGAC-CGAAAGCCCCCCTTCCTTACCTTCAGCTCCCGCCACCTCTCTTTGTCCT----TGAATGGATACGGCGCGTGCCTTTCACCTGCCACCGACCCTGTGATTTC---TCCTGTTTGCTGCCCTCATTCCTGGGTCTGCCCATGTTGTCATAATGGATGGAAAAGCTAAA-GCCATTTCCAGTCATGTC----------------TCTCGCTGCTGACAGTGGGAAGTTTGTTCTGCTGTTAGAGT-------------------------------CCGAGTTCATTTCATCCG-TTTCCCTCAGCACA-GAGCACCCTCCTCGGCAGCTCCTGCACGATCACGTTCTGGCTGAGTGGGACACAATGGCACAGGAAGACCTTTGG-C-CACTCCTCAGCCAGGTGACTAACATGCAGTTTCTACATGTAAGGAGAGAGCAGA-T-----------------------------------GCTCACC-------------------------------CTTTGGGCATCCATCCTT----------------TTGGTCCT-TTGAGTAACATGTAAACAATTGTTTCTTCAGATACATGGTCCATTCTCAAGAGACCTACAGGA-------------------------GTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178844919 657 + 195471971 AGGAGGATGGAGAAGGGTAGACCGTAAATCTGGAGGGCATAGAAG-ACATTAGC-CACCACAGATCAGTCTCTCAGCACAGCCCTCTTC----------------GCTTCCTGGGAC-TCACAGATCTCCTTATCTGAAC------CCTGCCACA---CTCTGTCTT----TGGAGAGA---AGTCTGGGC---------------------GAGGATTTTCCAC------ACCGACCTCCTTCCTCATTCTGCCGA-GCTGTAATAATGGGCAGAGTCGCTCAAGGCTATTTCAAATAATCTC----------------TTTTGCCATTGACAACATGAGGTTTGTTCTGCCATTAAAGTGACACAGGCCCTGGAGGGGGAGAATCCTATGTTCATTTTCTTTCATCCA-TTTTCTTCAGTGTGCAATCATCTTTCTCAGCAGCCCGCATCTGAC--AGTTCTGGCTGTGTGGGACACAGTGACACAGTTACTTCTTTGGTC-CACTTGTCTGCTGGGTTATT-AAATACAGATTACACATGAGAGGAGAAATTGAA-CTATATACTCCTGAGTGTTACGCttttgggtttgggtctcactaccatggaacttactatgtagaccaggatggccttgaactctcagcCGTGATAGTATTAAAGGCATAGGTCTC-TTGAGTGACATTCAGACCATCGTTTCTTCAGACACATCATCAATGCCCAGGAGACCTACAAGA-------------------------GTCT i mm10.chr1 I 1108 C 0 s canFam3.chr7 36427193 663 + 80974532 tgcaggatgggaaagggtgg-gaatgcatctggagggcacagaagaaaattggcccagcaTGGA--------TGGGAACGATT--CTTTCCAAATACCCTCCCTCACTCTCTGAAAG-GAAGAGACACCC-----TGGCCTTCGCTGCCACCACCCTTCTCTGTTCTCGGATGGATGGATGCAGCTTACCCCTCTCACACCCTGCCTTGCCTGTCATTTTCTGTCCTGTGCACTGCCCTCATTCCTCACTCTGCCAATACTGTCATCATGGGCAGAACAAATAGAGGCTATTTCAAAACATCTCTCTTTTTTTTTTTTTTTTTTGCTACCAACAGCATGAGGTTTGCTCTGCCATTAGAGTGACACAGACCCGGGATGAGG----TTTCAGCCTGAGCTCATTGCATCCATTTTTCCTCAGCACA-GACCATCTTTCTCAGCGGCCCCTGCTGGACCAATTTCTGGCTGGGTGGGACACAGCAGCACAGCAATAGCTTTGG-CTCATTTGCCGGCCAGCTTGCCAAAATGAAGCTTCCACATGCGAGCACAGATCACACT-----------------------------------GCACACT-------------------------------CTCTGGATGTCACCCTTT----------------CTGGTCCTCTTGAATGACGTTTAGAGCACTGTTTCTTCAGATATGTTGTCAATACCCAAGACATCTACAATACCCAAGACACTGTTTCTTCAGATATGTTG i canFam3.chr7 C 0 I 206 a score=353069.000000 s hg38.chr1_KI270759v1_alt 275555 96 + 425601 GTATCACCTGGATAAGTATTCACCAGGCTCTCTATGC--CCAGTTTTTTCCCAAGTTCCAACCAAGAGCTATTGAT--GGCTTTGCTCTTGATCAGAATA s panTro4.chr1 225032213 96 + 228333871 GTATCACCTGGATAAGTATTCACCAGGCTCTCTATGC--CCAGTTTTTTCCCAAGTTCCAACCAAGAGCTATTGAT--GGCTTTGCTCTTGATCAGAATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226401168 96 - 229942017 GTACCACCTGGATAAGTGTTCACCAGGCTCTCTATCC--CCAGTTTTTTCCCAAGTTCCAACCAAGAGCTATTGAT--GGCCTTGCCCTTGATCAGAATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140284650 96 - 143122389 ATACCACCTGGATAAGTATTCACCAGGCTCTCTATCC--CCAGTTTTTTCCCAAGTTCCAACTAAGAGCTACTGAT--GCCTTTGCCCTTGATCAGAATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16992885 96 - 229590362 GTACCACCAGGATGAGTATTCACCAGGCTCTCTATCC--CCAGTTTTTTCCCAAGTTCCAACCAAGAGCTGTTGAT--GGCTTTGCCCTTGATCAGAATA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223756296 96 - 227556264 GTACCACCAGGATGAGTATTCACCAGGCTCTCTATCC--CCAGTTTTTTCCCAAGTTCCAACCAAGAGCTGTTGAT--GGCTTTGCCCTTGATCAGAATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16806610 96 - 220367699 GTACCACCAGGATGAGTATTCACCAGGCTCTCTATCC--CCAGTTTTTTCCCAAGTTCCAACCAAGAGCTGTTGAT--GGCTTTGCCCTTGATCAGAATA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82604835 96 + 85787240 GTACCACCAGGATGAGTATTCACCAGGCTCTCTATCC--CCAGTTTTTTCCCAAGTTCCAACCAAGAGCTGTTGAT--GGCTTTGCCCTTGATCAGAATA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14284466 95 - 49578535 GTACCACCCGGACGAATACTCACCAGGCTGTCTATCC--CCAGTTTTCTCCCAA-CTCCAACCAAGAACGATTGAG--GGCTTTGCCCTTGATCAGAATA i calJac3.chr19 C 0 I 151 s mm10.chr1 178845576 87 + 195471971 GATCTGCCTGAA-GAATACCCACCAGGTTCTCTATCCATCCTGGCCTCAACCAAGTTCAAACCACGAG------------CTTTGCTTTTAATAAGAATA i mm10.chr1 C 0 C 0 s canFam3.chr7 36428062 98 + 80974532 gtcccTTCTGGAGGGGTATTAAGTATCCTCTCCACTC--CTAATTTTTTCCCAAATTTGAACCAAGAGCTATTGATGAGACCTTACCCTTGATCAGAATA i canFam3.chr7 I 206 C 0 a score=20720.000000 s hg38.chr1_KI270759v1_alt 275651 6 + 425601 GCATTG s panTro4.chr1 225032309 6 + 228333871 GCATTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226401264 6 - 229942017 GCATTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140284746 6 - 143122389 GCATTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16992981 6 - 229590362 GCGTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223756392 6 - 227556264 GCGTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16806706 6 - 220367699 GCATTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82604931 6 + 85787240 GCATTG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178845663 6 + 195471971 GCACTA i mm10.chr1 C 0 C 0 s canFam3.chr7 36428160 6 + 80974532 GCACTG i canFam3.chr7 C 0 C 0 e calJac3.chr19 14284561 151 - 49578535 I a score=190521.000000 s hg38.chr1_KI270759v1_alt 275657 52 + 425601 GGTTTTGCTGCAAATATATTCTTGAGCATTATAGTGATGaagaaa----------------gaaagaa s panTro4.chr1 225032315 52 + 228333871 GGTTTTGCTGCAAATATATTCTTGAGCATTATAGTGATGAagaaa----------------gaaagaa i panTro4.chr1 C 0 I 36 s ponAbe2.chr1 226401270 52 - 229942017 GGTTTTGCTGCAAATATATTCTAGAGCATTATAGTGATGAagaaa----------------gatagac i ponAbe2.chr1 C 0 I 44 s nomLeu3.chr5 140284752 51 - 143122389 GGTTTTG-TGCAAATATATTCTTGAGCACTATAGTGATGAagata----------------gatagat i nomLeu3.chr5 C 0 I 20 s rheMac3.chr1 16992987 52 - 229590362 GGTTTTGCTGCAAACATATTCTTGAGCATTATAGTGATGAagata----------------gatagat i rheMac3.chr1 C 0 I 52 s macFas5.chr1 223756398 52 - 227556264 GGTTTTGCTGCAAACATATTCTTGAGCATTATAGTGATGAagata----------------gatagat i macFas5.chr1 C 0 I 92 s papAnu2.chr1 16806712 52 - 220367699 GGTTTTGCTGCAAACATATTCTTGAGCATTATAGTgatgaagata----------------gatagat i papAnu2.chr1 C 0 I 32 s chlSab2.chr25 82604937 52 + 85787240 GGTTTTGCTGCAAACATATTCTTGAGCATTATAGTGATGAagata----------------gatagat i chlSab2.chr25 C 0 I 32 s calJac3.chr19 14284712 52 - 49578535 GGTTTTGCTGCAAATATATTCTTGAGCATTATAGTGAGGAAGACA----------------GAAAGAC i calJac3.chr19 I 151 I 8 s mm10.chr1 178845669 51 + 195471971 GGTTTTGTTGAAGATTCATTAT-AATTGTCATAATAATAAAGGGA----------------GATAGAA i mm10.chr1 C 0 I 1112 s canFam3.chr7 36428166 68 + 80974532 AGTTTTGTTGCAAATACATTTGTGAGCATTGTAATGATGAAGATAAATAATTTtagaagatgatagat i canFam3.chr7 C 0 C 0 a score=33162.000000 s hg38.chr1_KI270759v1_alt 275709 20 + 425601 agatagatagataga-taata s panTro4.chr1 225032403 20 + 228333871 agatagatagataga-taata i panTro4.chr1 I 36 C 0 s ponAbe2.chr1 226401366 20 - 229942017 agatagataaataga-taata i ponAbe2.chr1 I 44 C 0 s nomLeu3.chr5 140284823 20 - 143122389 agaccgacagataga-taata i nomLeu3.chr5 I 20 C 0 s rheMac3.chr1 16993091 21 - 229590362 agacagacagatagattaata i rheMac3.chr1 I 52 C 0 s macFas5.chr1 223756542 21 - 227556264 agacagacagacagactaata i macFas5.chr1 I 92 C 0 s papAnu2.chr1 16806796 13 - 220367699 --------agatagattaata i papAnu2.chr1 I 32 C 0 s chlSab2.chr25 82605021 17 + 85787240 ----agacagacagattaata i chlSab2.chr25 I 32 C 0 s calJac3.chr19 14284772 5 - 49578535 ----------------TGATT i calJac3.chr19 I 8 C 0 s canFam3.chr7 36428234 21 + 80974532 agatagatagatagatagata i canFam3.chr7 C 0 C 0 e mm10.chr1 178845720 1112 + 195471971 I a score=536436.000000 s hg38.chr1_KI270759v1_alt 275729 164 + 425601 gagaaataga-agataggtagatagatagaGAAAGAAGCTTGCGTGTGTTTGTTTCAAAGAATGGGGTCAGTTTTCTTACAGCCACC-TATTCTCTCGCCTGGACATATATTCAGTGAAT-GCTTCTGTTTGTAAGATGGCTAACTGGGA----------TATGGGTCT----TACAGGTC s panTro4.chr1 225032423 164 + 228333871 gagaaataga-agataggtggatagatagaGAAAGAAGCTTGCGTGTGTTTGTTTCAAAGAATGGGGTCAGTTTTCTTACAGCCACC-TATTCTCTCGCCTGGACATATATTCAGTGAAT-GCTTCTGCTTGTAAGATGGCTAACTGGGA----------TATGGGTCT----TACAGGTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226401386 161 - 229942017 gagaagtaga-agataggtagatagat----aAAGAAGCTTGCGTGTGTTTGTTTCAAAGAATGGGGTCAGTTTTCTTACAGCCACC-TATTCTCTCGCCTGGACCTATATTCAGTGAATGGCTTCTGTTTGTAAGATGGCTAACTGGGC----------TATGGGTCT----TACAGGTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140284843 165 - 143122389 gagaaataga-agataggtagatagatagataAAGAAGCTTGCATGTGTTTGTTTCAAAGAATGGGGTCAGTTTTCTTACAGCCACC-TATTCTCTCGCCTGGACCTATATTCAGTGAATGGCTTTTGTTTGTAAGATGGCTAACTGGGA----------TATGGGTCT----TACAGGTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16993112 165 - 229590362 gagaaataga-agataggtagatagatagGGAAAGAAGCTTGTGTGTGTTTGTTTCAAAGAATGGGGTCAGTTTTCTTACAGCCACC-TGTTCTCTTGCCTGGACCGATATTCAGTGAATGGCTTCTGTTTGTAAGATGGCTAACTGGGA----------TATGGGTCT----TGCAGGTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223756563 165 - 227556264 gagaaataga-agataggtagatagatagGGAAAGAAGCTTGTGTGTGTTTGTTTCAAAGAATGGGGTCAGTTTTCTTACAGCCACC-TGTTCTCTTGCCTGGACCGATATTCAGTGAATGGCTTCTGTTTGTAAGATGGCTAACTGGGA----------TATGGGTCT----TGCAGGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16806809 165 - 220367699 gagaaataga-agataggtaggtagatagggaaagaagcttgtgtgtgtttgtttcaaAGAATGGGGTCAGTTTTCTTACAGCCACC-TGTTCTCTTGCCTGGACCGATATTCAGTGAATGGCTTCTGTTTGTAAGATGGCTAACTGGGA----------TATGGGTCT----TGCAGGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82605038 165 + 85787240 gagaaataga-agataggtagatagatagGGAAAGAAGCTTGTGTGTGTTTGTTTCAAAGAATGGGGTCAGTTTTCTTACAGCCACT-TGTTCTCTTGCCTGGACCGATGTTCAGTGAATGGCTTCTGTTTGTAAGATGGCTAACTGGGA----------TATGGGTCT----TGCAGGTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14284777 157 - 49578535 CAAAAATAGA-AGCTAGGTAGGTAGA----GAAAGGAGCTTGTGTGTGTTTGTTTCAGAGAATGGGGTTGGTTTTCTTACAGCC----TGTTCTCTTGCCTGGGGCTCTGTTCCATGAGTGGC-TCTTTTTGTAAGATGGGAAACTGGGG----------TATGGGTCT----TACAGGTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178846832 147 + 195471971 GATAGAGAGT-AGACAGATTGACAAATATATAATAAAG-----GTTTTTTTTTTTGAAAGAATGAGGT--------TTGAAGGTGCCATGCTCTCAGTATTGGGG----GCTAAGGGGGT-GTTCCTGTTTGCAAGATGGCTATCAGGG-----------TCTCAGTCT----TCAGAGCC i mm10.chr1 I 1112 C 0 s canFam3.chr7 36428255 156 + 80974532 gatagatagatagatagatagataggcagatagacagaCCTGTGTGGATGTGTGTTCAAGAATGGGATCAGTTTTCTTAGAACCATC-------------------------CACTGAATGGCTCCTTTTGGCAGGATGGCTGACTGGGAGGCCCAGTCCTAGGGGTCTGTCCTGCAAGTC i canFam3.chr7 C 0 C 0 a score=485733.000000 s hg38.chr1_KI270759v1_alt 275893 167 + 425601 TTCAGTTCCTATAAGAGTCTACAACCACAGCCTCATTAAC-ACATGCTCTCTGGTGAAAAGACATTAAATGGGGAGGGAGGAGGTGTGGATGCTACGCTGGCTTCACCACATGTAATTATTGAACTTTGTATATCACTTTACCTTTCTGGGTCTCAGGGACCTTGTCT s panTro4.chr1 225032587 167 + 228333871 TTCAGTTCCTATAAGAGTCTACAACCACAGCCTCATTAAC-ACATGCTCTCTGGTGAAAAGACATGAAATGGGGAGGGAGGAGGTGTGGATGCTACGCTGGCTTCACCACATGTAATTATTGAACTTTGTGTATCACTTTACCTTTCTGGGTCTCAGGGACCTTGTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226401547 167 - 229942017 TTCAGTTCCTGTAAGAGTCTACAACCACAGCCTCATTAAC-ACGTGCTCTCTGGTGAAAAGACATTAAATGGGGAAGGAGGAGATGTGGATGCTACGCTGGCTTCACCACATGTAATTATTGAACTTTGTGTATCACTTTATCTTTCTGGGTCTCAGGGACCTTGTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140285008 155 - 143122389 TTCAGTTCCTATAAGAGTCCACAACCACAGCCTCATTAAC-ACGTGCTCTCTGGTAAAAAGACATTAAATGGGGAGCGAGGAGGTGTGGATGCTACGTTGGCTTCACCACATGTAATTATTGA------------ACTTTACCTTTCTGGGTCTCGGGGACCTTGTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16993277 167 - 229590362 TTTGGTTCCTATAAGAGTCCACAACCACAGCCTCATTAAC-CACAGCTCTCTGGTGAAAAGACATTAAATGGGGAGGGAGGAGGTGTGGATGCTACGCTGGCTTCACAACATGTAATTATTGAACTTAGTGTATCACTTTACCTTTCTGGGTCTCAGGGACCTTGTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223756728 167 - 227556264 TTTGGTTCCTATAAGAGTCCACAACCACAGCCTCATTAAC-CACAGCTCTCTGgtgaaaagacattaaatggggagggaggaggtgtggatgctacgctggcttcacaacatgtaattattgaacttagtgtatcactttacctttctgggtctcagggaccttgtct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16806974 167 - 220367699 TTTTGTTCCTATAAGAGTCCACAACTACAGCCTCATTAAC-CACAGCTCTCTGGTGAAAAGACATtaaatggggagggaggaggtgtgGATGCTACGCTGGCTTCACAACATGTAATTATTGAACTTAGTGTATCACTTTACCTTTCTGGGTCTCAGGGACCTTGTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82605203 167 + 85787240 TTTGGTTCCTATAAGAGTCCACAACCACAGCCTCATTAAC-CACAGCTCTCTGgtgaaaagacattaaatggggagggaggaggtgtggatgctacgctggcttcaccacatgtaattattgaactttgtgtatcactttacctttctgggtctcagggaccttgtct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14284934 167 - 49578535 TTCAGTTCCTATGAGAGTGCACAGCCACAGCCTCAGGGGCACCCTGCTCTCTGGTGAaaagacagtacct-gggagggagagggcgtggacgctacattagctccaccgcatctaattagtgaactttgtgggtcactttacctttctgagtctcagggaccttatct i calJac3.chr19 C 0 C 0 s mm10.chr1 178846979 134 + 195471971 TTCTCTTCCAACTAGAGAGT----CCACAGTCTCGTGGAC------CTCTAGAGTGGACAG-----------------------CATACATGCAATGGTGCTCTCAGCTTGTCTGATTGTTGGATTGAAGATGGCACTTTGCTTCTTTGGACCTCAGTG-CATTGTCT i mm10.chr1 C 0 I 8 e canFam3.chr7 36428411 0 + 80974532 C a score=610185.000000 s hg38.chr1_KI270759v1_alt 276060 223 + 425601 AGAAACCCAACAaggc-------aggctgtggtagctcatgcctgtaatcccagcactttgggaggctgaggtgggaggatttcttgagcccagaaggccgaggccacagtgagctgagattgggccactgcactccagcttctgcaacagagagagaccctgtc---aaagagagaaaG----aggaaggaaggaa------------------------------------------------------ggaaggaaggaaggaaggaaggaaATA------------------------------------------------A---ATAAGCAA------TAAG s panTro4.chr1 225032754 275 + 228333871 AGAAACCCAACAaggc-------aggctgtggtagctcatgcctgtaatcccagcactttgggaggctgaggtgggaggattgcttgagcccagaaggccgaggccacagtgagctgagattgggccactgcactccagcctctgcaacagagagagaccctgtc---aaagagagaaaGAGTCaggaaggaaggaa------------------------------------------------------ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggagggaaggcaggcaggCA---ATAAGCAA------TAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226401714 239 - 229942017 GGAAACCCAACAAGgc-------ggggtatggtagctcgtgcctgtaatcccagcactttgggaggctgaggtaggaggattgcttgagcccagaaggtcgaggccacagtgagctgagattgggccactgcactccagcctctgcaacagagagagaccctgtc---aaagagagaaag----agagagaaaggaa------------------------------------------------------ggaaggaaggaagaaaggaaggaaggc--------------------------------aggcaggcaggcaggCA---ATAGGCAA------TAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140285163 226 - 143122389 GGAAACCCAACAAGGT-------GAggtgtggtagttcatgcctgtaatcccagcactctgggaggctgaggtgggaggattgcttgcgcccagaaggtcgagtctacagtgagccaagattgggccactgcactccagcctctgcaacagagagagaccctgtc---aaagagagaaag----agagagaaaggaa------------------------------------------------------ggaaggaaggcaggcagcaggcaagca---------------------------------------------ggca---ATAAGCAA------TAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16993444 305 - 229590362 GGAAACCCAACAAGgc-------ggggtgtggtagctcatgcctgtaatcccagcactttgagaggctgaggtgcgaggattgcttgagcccagaaggtcgaggctacagtgagctgagattgggccactgcactccagcctctgcaacagagagagaccctgtc---aaagaaagaaag----agagagaaaGAGaggaaggaaggaagaaaaggaaggaaggaaaggaaggaaggaaggagggaaggaaggaaggaaggaaggaaggaaggaagga--------------------aggaaggcaggcaggcaggcaggcaggca---ATAAGCAA------TAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223756895 305 - 227556264 ggaaaCCCAACAAGgc-------ggggtgtggtagctcatgcctgtaatcccagcactttgagaggctgaggtgcgaggattgcttgagcccagaaggtcgaggctacagtgagctgagattgggccactgcactccagcctctgcaacagagagagaccctgtc---aaagaaagaaag----agagagaaaGAGaggaaggaaggaagaaaaggaaggaaaagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagga--------------------aggcaggcaggcaggcaggcaggcaggca---ATAAGCAA------TAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16807141 290 - 220367699 GGAAACCCAACAAGGc-------ggggtgtggtagctcatgcctgtaatcccagcactttgagaggctgaggtgcgaggattgcttgagcccagaaggtcgaggctacagtgagctgagattgggccactgcactccagcctctgcaacagagagagaccctgtc---aaagaaagaaag----agagagaaagagaggaaggaaggaagaa-------------aaggaaggaaggaagtatgtaatg--gaatggaaggaaggaaggaaggaagga--------------------aggaaggcaggcaggcaggcaggcaggca---ataAGCAA------TAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82605370 241 + 85787240 gaaaaCCCAACAAGgc-------ggggtgtggtagctcatgcctgtaatcccagcactttgagaggctgaggtgcaaggattgcttgagcccagaaggtcgaggctacagtgagctgagattgggccactgcactccagcctctgcaacagagagagaccctgtc---aaagaaagaaag----agagagaaagaga----------------------------------------------------------------aaGAGaggaaggaagga--------------------aggaaggaaggaaggCAGGCAGGCAGGCA---ATAAGCAA------TAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14285101 285 - 49578535 gGGAACACAACAAGGCCGGGGGGGGGTGgtggtggctcatggctgttat-ccaggacgttgggaggctgaggagggaggattgctcgagcccagaaggtcaaggctgcagtgagctgagattgggtcgctgcactccagcctctgcaacatagagtgactctatctcaagagaaaaagag----aGggagggaaggagggagggaggaaggaa--------------------------------------ggatggaaggatggaaggaaggaagga--------------------aggaaggcaggCACGCATGCACGCACGCACACATGCGCAAGCACAGTAAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178847113 8 + 195471971 I e canFam3.chr7 36428411 0 + 80974532 C a score=607709.000000 s hg38.chr1_KI270759v1_alt 276283 187 + 425601 CATGAAGTGGCAGTTATTCTCCAAGTGAACAGTGTGGAGTAACT--GCCATTTTACTGGTACTCAAGTACTTGGTGTAACTGCTACATCCAGGCAACTGCTGAGACTTGAGCAAGGACCTTTACAGCCTTTGGAAGTCCCATCCGTCAGACACACCAGGGAGCCCGATGCTGAACTTCA--TGT------------------CTGTGTT s panTro4.chr1 225033029 187 + 228333871 CATGAAGTGGCAGTTATTCTCCAAGTGAACAGTGTGGAGTAACT--GCCATTTTACTAGTACTTAAGTACTTGGTGTAACTGCTACATCCAGGCAACTGCTGAGACTTGAGCAAGGACCTTTACAGCCTTTGGAAGTCCCATCCGTCAGACACACCAGGGAGCCCGATGCTGAACTTCA--TGT------------------CTGTGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226401953 187 - 229942017 CATGAAGTGGCAGTTATTCTCCAAGTGAACAGTGTGGAGTAACT--GCCATTTTACTAGTACTCAAGTAGTTGGTGTAACTGCTACATCCAGGCAACTGCTGAGACTTGAGCAAGGACCTTTACAGCCTTTGGAAGTCCCATCTGCCAGACACACCAGGGAGCCTGATGCTAAACTTCA--TGT------------------CTGTGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140285389 187 - 143122389 CATGAAATGGCAGTTCTTCTCCAAGTGAGCAGTGTGGAGTAACT--GCCGTTTGACTAGTACTCAAGTACTCGGTGTAACTGCTACATCCAGGCAACTGCTGAGACTTGAGCAAGGACCTTTCCAGCCTTTGGAAGTCCCATCTGTCAGACACACCAGGGAGCCTGATGCTGAACTTCA--TGT------------------CTGTGTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16993749 187 - 229590362 CATGAAGTGGCAGTTATTCTCCAAGTGAACAGTGTGGAATAACT--GCCATTTTACTAGTACTCGAGTACTCAGTGTAACTGCTACATCCAGGCAACTGCTGAGACTTGAGCAAGGACCTTTACAGCCTTTGGAAGTCCGATCCATCAGACACACCAGGGAGCCTGATGCTAAACTTCG--TGT------------------CTGTGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223757200 187 - 227556264 CATGAAGTGGCAGTTATTCTCCAAGTGAACAGTGTGGAATAACT--GCCATTTTACTAGTACTCGAGTACTCAGTGTAACTGCTACATCCAGGCAACTGCTGAGACTTGAGCAAGGACCTTTACAGCCTTTGGAAGTCCGATCCATCAGACACACCAGGGAGCCTGATGCTAAACTTCG--TGT------------------CTGTGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16807431 187 - 220367699 CATGAAGTGGCAGTTATTCTCCAAGTGAACAGTGTGGAATAACT--GCCATTTTACTAGTACTCAAGTACTCAGTGTAACTGCTACATCCAGGCAACTGCTGAGACTTGAGCAAGGACCTTTACAGCCTTTGGAAGTCCGATCCATCAGACACACCAGGGAGCCTGATGCTAAACTTCT--TGT------------------CTGTGTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82605611 187 + 85787240 CATGAAGTGGCAGTTATTCTCCAAGTGAACAGTGTGGAATAACT--GCCATTTTACTAGTACTCAAGTACTCAGTGTAACTGCTACATCCAGGCAACTGCTGAGACTTCAGCAAGGACCTTTACAGCCTTTGGAAGTCCGATCCATCAGACACACCAGGGAGCCTGATGCTAAACTTTG--TGT------------------CTGTGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14285386 189 - 49578535 CATGAAGTGGCAGTTATTCTCCAAGTGAACAGTGTGGAGTAGCT--GCCGTTTGACTAGTACTCAAGTACTCGGTGTAACTGCCACAGCCAGGCCATTGCTGAGGCTTGAGCAAGGACCTTTACAGCCTTTGGAAGTCCGACCCGTCAGACTCACAAGGGAGCAGGATGCGAAACTTCACGTGT------------------GTGTGTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178847121 197 + 195471971 CATGCAGTGTCAGCTCCATTCC-ATTG------GTGGAGTGACTTAGTGGTCTCCTTAGCACTGCAGTGCTAATGG--GCAGTTATATGCCGGT-ACTACCAAGTCTTGAACAGGAATCATCACGGCCTTTGGAAGTCAAATCTATCAGATACACAAAGAAGAAGAATGCTAAATTTGA--TGTCGCCTGGCGCCAACCTGCCTCAGTC i mm10.chr1 I 8 C 0 e canFam3.chr7 36428411 0 + 80974532 C a score=2254324.000000 s hg38.chr1_KI270759v1_alt 276470 597 + 425601 TGCTGAATGATGAGCAGGTCCTCTTCAGCGAGAGCTACA--CGAGCTGTGAATTTACCACGTGCCCGTCAAGGGGGTCATTGTGTTCCTCACTCTGTCAATAAACCACACAGTAAAGATCTGGATAATAGGAGCAGAACAGTTTCAAAGGACTTGTTACAATGTATCAAGTC-AATAACTTATAATTTTAGAAAA---TCCCTGAATACAAATTTGCACAATTTTGAGTTGTTTTACAACT----TACCAGGCCGTTAATCTAAGTTTTAAAAGTCTCTTAATATACTTAATCATAGCCTGTGCTTTTTT-TTTT---------AAGTGCTGAAATATGTTTCAGCATTACTGAACCACAGCAGCACAAGG--------AAAAAA-----CGACTTTAACTCGTTCCATAAAACTTG-CAAAGCAACCATAAATATATACAGTGTGGGGTCTGTTTTGTGCACAATTTATATGCAATAGGCTGGGCTTGATCGAGAGGATTTATGCTTATCGTC------TGTCTCCCCAGGCagacaattgtggtagaaaagaaaatgcacaggacctagagtcagggctgggtttcaatcccatttctgccacc-tgctttttgtgagaccctagggaagcctttt s panTro4.chr1 225033216 605 + 228333871 TGCTGAATGATGAGCAGGTCCTCTTCAGTGAGAGCTACA--CGAGCTGTGAATTTACCATGTGCCCGTCAAGGGGGTCATTGTGTTCCTCACTCTGTCAATAAACCACACAGTAAAGATTTGGATAATAGGAGCAGAACAGTTTCAAAGGACTTGTTACAATGTATCAAGTC-AATAACTTATAATTTTAGAAAA---TCCCTGAATACAAATTTGCACAATTTTGAGTTGTTTTACAACT----TACCAGGCCGTTAATCTAAGTTTTAAAAGTCTCTTAATATACTTAATCATAGCCTGTGCTTTTTT-TTTT-------TAAAGTGCTGAAATATGTTTCAGCATTACTGAACCACAGCAGCACAAGG--------AAAAAA-----CGACTTTAACTCGTTCCATAAAACTTG-CAAAGCAACCATAAATATATACAGTGTGGGGTCTGTTTTGTGCACAATTTATATGCAATAGGCTGGGCTTGATCGAGAGGATTTGTGCTTATCGTCTTGCCTTGTCTCCCCAGGTagacaattgtggtagaaaagaaaatgcacaggacctagagtcagggctgggtttcaatcccatttctgccacc-tgctttttatgagaccctagggaagcctttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226402140 612 - 229942017 TGCTGAATGATGAGCAGGTCCTCTTCAGCGAGAGCTACA--CGAGCTGTGAATTTACCATGTGCCCATTAAGGGGGTCATTGTATTCCTCAATCTGTCAATAAACCACACAGTAAAGATTTGGATAATAGGAGCAGAACAGTTTCAAAGGACTTCTTACAATGTATCAAGTC-AATAACTTATAATTTTAGAAAA---TCTCTGAATACAAATTTGTACAATTTTGAGTTGTTTTACAACT----TACCAGGCCATTAATCTAAGTTTTAAAAGTCTCTTAATATACTTAATCATAGCCTGTGCttttta-aaaaaaaaaaaaaaaGTGCTGAAATATGTTTCAGCATTACTGAACCACAGCAGCACAAGG--------GAAAAA-----CGACTTTAGAGTGTTCCATAAAACTTG-CAAAGCAATCATAAATATATTCAGTGTGGGGTCTGTTTTGTGCACAATTTATATGCAATAGGCTGGGCTTGATCGAGAGGATTTATGCTTATCATCTTGCCATGTCTCCCCAGGTagacaattgtggtagaaaggaaaatgcacaggacctagagtcagggctggggttgaatcccatttctgccacc-tgctttttatgagaccctagggaagcctttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140285576 608 - 143122389 TGCTGAATGACGAGCGGGTCCTCTTCAGCGAGAGCTACA--CGAGCTGTGAATTTACCATGTGCCCATCAAGGGGGTCATTGTATTCCTCAATCTGTCAATAAACCACACAGTAAAGATTTGGGTAATAGGAGCAGAACAGTTTCAAAGGACTTGTTACAGTGTATCAAGTC-AATAACTTATAATTTTAGAAAA---TCCCTGAATACAAATTTGCACAATTTTGAGTTGTTTTGCAACA----TATCAGGCCATTAATCTAAGTTTTAAAAGTCTCTTAATATACTTAATCATAGCCTGTGCTTTTTT-TAAA----AAAGAAAGTGCTGAAATATGTTTCAGCATTACTGAACCACAGCAGCACAAGG--------GAAAAA-----CGACTTTAGAGTGTTCCATAAAACTTG-CAAAGCAACCATAAATATATTCAGTGTGGGGTCTGTTTTGTGCACAATTTATATGCAATAGGCTGGGCTTGATCGAGAGGATTTATGCTTGTCCTCTTGCCTTGTCTCCCCAGGTAGACAATTgtggtagaaaggaaaagacacaggacttagagccagggctgggtttgaatcccatttctgccacc-tgctctttatgagaccctagggaagcctttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16993936 594 - 229590362 TGCTGAATGATGAGCAGGTCCTCTTCAGTGAGAGCTACA--GGAGTTGTGAATTTACCATGTGCCTATCAAGGGGGTCATTGTGTTCCTCAATCTGTCAATAAACCGCACAGTAAAGATTTGGATAATAGGAGCAGAACAGTTTCAAAGGACTTGTTACAATGTATGAAGTC-AATAACTTATAATTGTAGAAAA---TCCCTGAATACAAATTTGCACAATTTTGAGTTGTTTTACAACT----TATCAGGCCATTAATCTAAGTTTTAAAAGTCTCTTAATATACTTAATCATGGCCTGTGCTTTTTT-AAAA-----AAAAAAGTGCTGAAATATGTTTCAGCATTACTGAACCACAGCAGCACAAGG--------GAAAAA-----CGACTTTAGAGAGTTCCATAAAACTTG-CAAAGCAACCATAAATATATTCAGTGTGGGGTCTGTTTTGTGCACAATTTATATGCAGTAGGCTGGGCTTGATCAAGAGGATTTATGCTTGTCCT-------------CCCAGGTagacaattgtggtagaaaggaaaatgcacaggacttagagccagggctggatttgaatcccatttctgctacc-tgctttttatgagaccctagggaagcctttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223757387 594 - 227556264 TGCTGAATGATGAGCAGGTCCTCTTCAGTGAGAGCTACA--GGAGTTGTGAATTTACCATGTGCCTATCAAGGGGGTCATTGTGTTCCTCAATCTGTCAATAAACCGCACAGTAAAGATTTGGATAATAGGAGCAGAACAGTTTCAAAGGACTTGTTACAATGTATGAAGTC-AATAACTTATAATTGTAGAAAA---TCCCTGAATACAAATTTGCACAATTTTGAGTTGTTTTACAACT----TATCAGGCCATTAATCTAAGTTTTAAAAGTCTCTTAATATACTTAATCATGGCCTGTGCTTTTTT-AAAA-----AAAAAAGTGCTGAAATATGTTTCAGCATTACTGAACCACAGCAGCACAAGG--------AAAAAA-----CGACTTTAGAGAGTTCCATAAAACTTG-CAAAGCAACCATAAATATATTCAGTGTGGGGTCTGTTTTGTGCACAATTTATATGCAGTAGGCTGGGCTTGATCGAGAGGATTTATGCTTGTCCT-------------CCCAGGTagacaattgtggtagaaaggaaaatgcacaggactgagagccagggctggatttgaatcccatttctgctacc-tgctttttatgagaccctagggaagcctttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16807618 607 - 220367699 TGCTGAATGATGAGCAGGTCCTCTTCAGTGAGAGCTACA--GGAGTTGTGAATTTACCATGTGCCTATCAAGGGGGTCATTGTGTTCCTCAATCTGTCAATAAACCGCACAGTAAAGATTTGGATAATAGGAGCAGAACAGTTTCAAAGGACTTGTTACAATGTATGAAGTC-AATAACTTATAATTGTAGAAAA---TCCCTGAATACAAATTTGCACAATTTTGAGTTGTTTTACAACT----TATCAGGCCATTAATCTAAGTTTTAAAAGTCTCTTAATATACTTAATCATAGcctgtgctttttt-ttaa-----aaaaaagtgctgaAATATGTTTCAGCATTACTGAACCACAGCAGCACAAGG--------AAAAAA-----CGACTTTAGAGAGTTCCATAAAACTTG-CAAAGCAACCATAAATATATTCAGTGTGGGGTCTGTTTTGTGCACAATTTATATGCAGTAGGCTGGGCTTGATCGAGAGGATTTATGCTTGTTCTCTTGCCTTGTCTCCCCAGGTAGACAATTGTGGTAGAAAGGAAAATGCACAGGACTTAGAGCCAGGGCTGGATTTGAATCCCATTTCTGCTACC-TGCTTTTTATGAGACCCTAGGGAAGCCTTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82605798 608 + 85787240 TGCTGAATGATGAGCAGGTCCTCTTCAGTGAGAGCTACA--GGAGTTGTGAATTTACCATGTGCCTATCAAGGGGGTCATTGTGTTCCTCAATCTGTCAATAAACCGCACAGTAAAGATTTGGATAATAGGAGCAGAACAGTTTCAAAGGACTTGTTACAATGTATCAAGTC-AATAACTTATAATTGTAGAAAA---TCCCTGAATACAAATTTGCACAATTTTGAGTTGTTTTACAACG----TATCAGGCCATTAATCTAAGTTTTAAAAGTCTCTTAATATACTTAATCATAGCCTGTGCTTTTTTAAAAA-----AAAAAAGTGCTGAAATATGTTTCAGCATTACTGAACCACAGCAGCACAAGG--------AAAAAA-----CGACTTTAGAGAGTTCCATAAAACTTG-CAAAGCAACCATAAATATATTCAGTGTGGCGTCTGTTTTGTGCACAATTTATATGCAGTAGGCTGGGCTTGATCGAGAGGATTTATGCTTGTCCTCTTGCCTTGTCTCCCCAGGTagacaattgtggtagaaaggaaaatgcacaggacttagagccagggctggatttgaatcccacttctgctacc-tgctttttatgagaccctagggaagcctttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14285575 598 - 49578535 CGCTGAATGGTGAGCGGGTCCTCTTC----AGAGCTATG--CGAGCTGTGAATTTACCTTGTGCCCATC--GGGGGTCACTGTATTCCTCAGTCTGTCAATAAGCCACACGGTAAAGGTTTGGAGAACAGGAGCAGAACAGTTTCAAAGGACTGGTGACCATGTATCAAGTC-AATAACTTATAATTTTAGAAAA---TCCCCGAATACAAATTCGCACAATTTTGAGTTGTTTTACAACT----TATCAGGCCATTAATCT-GGTTTTAAAGGTCTCTTAATATACTTAATCAGAGCCTGTGCTTTTTT-TTAA-----TAAAAAGTGCTGAAATATGTTTCAGC-CTGCTGAACTGCATCGGCGCAAGG------ACAACAAA-----AGACTTTAGAGAGTT-CAGGAAGCTTG-CGAAGCAACCGT-AACACATTCAGTGTGCAGTCCGTGCTGTGCGCAATTTACACGCAATAGGCCGGGCTTGATGGAGAGGATTCGCGTCTGTCTTCTTGCCTTGTTTCCCCA-GTaggcacctgtgatacaaaggaacaggcacaggacctagcaccagggctgggtttcggtcccatttctgccacc-tgctttttctgagaccccagggaggcctttt i calJac3.chr19 C 0 C 0 s mm10.chr1 178847318 606 + 195471971 TGCTGAGTGATTCGAGGGT-CTGTTTGCAGAGAGCTACA--CAGGTTGTGAATTTATGGTGTGCCCAGCAAGAGGCTCAGTGTATCTGGCAATCTGTCAATAAACTACACTGTAGAGATTCGAGTAACA-CAGCAGAATAGTTTCAGA-GACTTGTTACAACCCATCAAGTCGGATAATTTACAACTTTAGGAAAATTCCCCCAAATACAAATTTACAAAATTTTGAGTTGTTTTATACTTTCTCTATCAGACCATTAACCTAAA-ATTAAAAGTCCTT---TATGCTAAATCACAGCCTAGGCTTTTAA-TTTT---------AAGT-TTAAAGTATGTTTCAGCAA-GCTAGACCACAGGAACATGAGGGTAAAGAGAAAAAATAAATTGACTCTAGAGAATTCCATAAAACTTGCCAAGGCAGCCGTAAATATATTCATGGTGAGGTCTGTTTTGTGTACAATTTATATGCAATTGGCT-GGCTCGATCGGGAGGATTTATGC-TGCTGCGTTGCTTCCTCTTTGCAAGTAGGCAG-GGTGGCAGACAGGCAAACTCACAGATCATAGAGCCGCATTGAGGTTTCAATCCCATTTCTTGAATCATAGTCCTTAAG--------GGGAGAGGTTCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36428411 593 + 80974532 TGCCGAGTGACTGGCAGGTCCTTGTAAGGGATGACTAAATTCAAGCTGTGAATTTACCCTGTGCCCACCAAGGGGGTCATTGTCTCCATCAACCTGTCAATAAAATACATGGTAAAGATTCGAATAACA-GAGTGGAACAGTTTCAAAGGACTTGTTACAATCTATAGAGTC-AATAACTGACAATTTTAGAAAA---TCCCCGAATACAAATTTACACAATTTGGGGTTGTTTTACGACT----TATCAGGCCATTAATCTACGTTTTAAAAGTCCCTTA-TATACTTAATCATAGCCTGTGCTTTCTT-AAAA-----------GTGCAGAAATACGTTCCAGCAT-GCTCAACCATAGCAACACTAGG-------AAAAAAA-----TGACTTAAGGGAATTCCGTAAGACTTGCCAACACAACCATAAAAATATTCAATATGGAGTCTGTTTGGGGTACGATTTATATGCAACAGGTGGGGCTTGATTAA-AGGGTTTGTGTTTGTCTTTGTGCCTTGTCTCCCCGGGTaggcagttatagtagaag-------tcacacaacttag-gccagaactgagtttgactcccgtgtctaccact-cacctcctaggagatgtcaagtagaccattt i canFam3.chr7 C 0 I 26 a score=125923.000000 s hg38.chr1_KI270759v1_alt 277067 41 + 425601 gc---tcctttgaacctgtctcctacttaacaataatatgccca s panTro4.chr1 225033821 41 + 228333871 gc---tcctttgaacctgtctcctacttagcaataatatgccca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226402752 41 - 229942017 gc---tcctttgaacctgtctcctacttaacaataatatgccca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140286184 41 - 143122389 gc---tcctttgaacctgtcttctacttaacgataatatgccca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16994530 41 - 229590362 gc---tcctttgaacctgtctcctacttaacaataatatgccca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223757981 41 - 227556264 gc---tcctttgaacctgtctcctacttaacaataatatgccca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16808225 41 - 220367699 GC---TCCTTTGAACCTGTCTCCTACTTAACAATAATATGCCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82606406 41 + 85787240 gc---tcctttgaacctgtctcctacttaacaataatatgccca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14286173 41 - 49578535 gc---tccttcatacctgtctcctacttaacactaaggtaccca i calJac3.chr19 C 0 C 0 s mm10.chr1 178847924 25 + 195471971 GCTCTTCTTTTTAACCTCTCTTCCA------------------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36429004 26 + 80974532 I a score=416131.000000 s hg38.chr1_KI270759v1_alt 277108 120 + 425601 ccttagagggcagctgtcaggatTGCCACAGAGCAAGGCAGAGGTGAGCCATCTGCAGATGCGTGCTGAATTTAAACCA-ATGCATGAG-TGACACGGAGCATGAGAGTGGCCAGCATCCTT s panTro4.chr1 225033862 120 + 228333871 ccttagagggcagctgtcaggatTGCCACAGAGCAAGGCAGAGGTGAGCCATCAGCAGATGCGTGCTGAATTTAAACCA-ATGCATGAG-TGACACGGAGCATGAGAGTGGCCAGCATCCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226402793 120 - 229942017 ccttagagggcagctgtcaggatTGCCACAGAGCAAGGCAGAGGTGAGCCATCAGCAGATGCGTGCTGAATTTAAACCA-ATGCATGAG-TGACATGGAGCATGAGAGTGGCCAGCATCCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140286225 120 - 143122389 ccttagagggcagctgtcaggatCGCCACAGAGCAAGGCAGAGGTGAGCCATCAGCAGATGCATGCTAAATTTAAACCA-ATGCATGAG-TGACACGGAGCACGAAAGTGGCCAGCATCCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16994571 119 - 229590362 ccttagagggcagctgtcaggatTGCCACAGAGCAAGGCAGAGGTGAGCCATCAGTAGATGCGTGCTGAATTTAAACCA-ATGCATGAG-TGACATGGAGCATGAGAGTGGTC-GCATCCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223758022 119 - 227556264 ccttagagggcagctgtcaggatTGCCACAGAGCAAGGCAGAGGTGAGCCATCAGTAGATGCGTGCTGAATTTAAACCA-ATGCATGAG-TGACATGGAGCATGAGAGTGGTC-GCATCCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16808266 119 - 220367699 CCTTAGAGGGCAGCTGTCAGGATTGCCACAGAGCAAGGCAGAGGTGAGCCATCAGCAGATACGTGCTGAATTTAAACCA-ATGCATGAG-TGACACGGAGCATGAGAGTGGTC-GCATCCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82606447 119 + 85787240 ccttagagggcagctgtcaggatTGCCACAGAGCAAGGCAGAGGTGAGCCATCAGCAGATGCGTGCTGAATTTAAACCA-ATGCATGAG-TGACACGGAGCATGAGAGTGGTC-GCATCCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14286214 109 - 49578535 ccttagagggcagctgtgaggaCTGCCCCAGGGCCAGGCGGAGGTGAGCCGTCAGAAGCTGCGTGCTGAATGTGAAGCACGTGCATGAG-T------------GAGAGTAGTCAGCATCCCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178847949 107 + 195471971 --TGAAAGGGCAGCTGT-------------GAGCAAAGCAGAGATTAGCCACTGGTGGTTATGTGTTGAGCCTAAATCATATCCACGAGATGAGACCAAGTATGAGAGTCCCCGGTAACTTC i mm10.chr1 C 0 I 84 s canFam3.chr7 36429030 121 + 80974532 CCTAAAAGGGTACCTGGGAGG-TTGGTGCAGAGCAGAGCAGAGGGAAGCCCTCAAGAGATGCTTGGTGAATTGCAACCACATGCAAGAGCTGACACAGAGCATAGGGGTCGACCGGATTTTT i canFam3.chr7 I 26 C 0 a score=236076.000000 s hg38.chr1_KI270759v1_alt 277228 83 + 425601 CCTCTCTCCCTGCACCCCGCAAAACAACTCCATCCCCCACTCTCTCTCAGAGGTGGCAGCGGCCA-----------------------TAATTCAGACACATGCAA------- s panTro4.chr1 225033982 83 + 228333871 CCTCTCTCCCTGCACCCCGCAAAACAACTCCACCCCCCACTCTCTCTCAGAGGTGGCAGCGGCCA-----------------------TAATTCAGACACACACAA------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226402913 81 - 229942017 CCTCTCCTTCTGCACCCCGCAAAACAACTGCACCCCCCACTCTCTCTCAGAGGTGGCAGTG--CA-----------------------CAATTCAGACACACACAA------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140286345 83 - 143122389 CCCCTCCCCCTGCACACCGCAAAACAACTCTACCCCCCACTCTCTCTCAGAGGTGGCAGCGGCCA-----------------------TAATTCAGACACACACAA------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16994690 83 - 229590362 CCTCTCCCCCTGCACCCCGCAAAACAAGTCCACCCCCCACTCTCTCTCAGAGGTGGCAGTGGCCA-----------------------CAACTCAGACACACACAG------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223758141 83 - 227556264 CCTCTCCCCCTGCACCCCGCAAAACAAGTCCACCCCCCACTCTCTCTCAGAGGTGGCAGTGGCCA-----------------------TAACTCAGACACACACAG------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16808385 83 - 220367699 CCTCTCCCCCTGCACCCCGCTAAACAAGTCCACCCCCCACTTTCTCTCAGAGGTGGCAGTGGCCA-----------------------TAACTCAGACACACACAG------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82606566 83 + 85787240 CCTCTCCCCCTGCACCCCGCAAAACAACTCCACCTCCCACTCTCTCTCAGAGGTGGCAGTGGCCA-----------------------TAACTCAGACACACACAG------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14286323 83 - 49578535 CCTCCCCACCTGTACCCCGCAAAATAACTCCACCTGCCACGCGCTCTCAGAGGCAGCAGCAGTCA-----------------------TAATTCAGACACACTCAA------- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36429151 110 + 80974532 ---CACCACCCATTCCCCAGAAACCTACACATGCCCACTCTGTCCCTCAGAAAGACCAGTGGTCGAAATATATTTACTTCTGTTTCGTGAATTCAGACACAGCCCCTGTGCCA i canFam3.chr7 C 0 C 0 e mm10.chr1 178848056 84 + 195471971 I a score=361191.000000 s hg38.chr1_KI270759v1_alt 277311 103 + 425601 CCCAGCCAGCGTA---ACCACCCCCTAC------TCACCCCCTGAAAATAGAAGAAGAAAGGATTTAGAGTCTGGGCAGATTGCTTTTAAAACATTT------------------------CCAACCTTCGATCTA s panTro4.chr1 225034065 103 + 228333871 CCCAGCCAGCGTA---ACCACCCCCTAC------CCACCCCCTGAAAATAGAAGAAGAAAGGATTTAGAGTCTGGGCAGATTGCTTTTAAAACATTT------------------------CCAACCTTCGATCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226402994 103 - 229942017 CCCAGCCAGCATA---ACTACCCCCTAC------CCACCCCCTGAAAATAGAAGAAGAAAGGATTTAGAGTCTGGGCAGATTGCTTTTAAAACATTT------------------------CCAACCTTCGATCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140286428 103 - 143122389 CCCAGCCAGCATA---ACTACCCCCTAC------CCACCCCCTGAAAATAGAAGAAGAAAGGATTTAGAGTCTGGGCAGGTTGCTTTTAAAACATTT------------------------CCAAGCTTCGATGTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16994773 103 - 229590362 CCCAGCCAGCATA---GCCACTCCCTAC------CCACCCCCTGAAAATAGAAGAAGAAAGGATTTAGAATCTGGGCAGATTGCTTTTAAAACATTT------------------------CCAACCTTTGATCTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223758224 103 - 227556264 CCCAGCCAGCATA---ACCACTCCCTAC------CCACCCCCTGAAAATAGAAGAAGAAAGGATTTAGAATCTGGGCAGATTGCTTTTAAAACATTT------------------------CCAACCTTTGATCTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16808468 103 - 220367699 CCCAGCCAGCATA---ACCACTCCCTAC------CCACCCCctgaaaatagaagaagaaaggatTTAGAATCTGGGCAGattgcttttaaaacattt------------------------ccaaccTTCGATCta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82606649 103 + 85787240 CCCAGTCAGCATA---ACCACTCCCTAC------CCACCCCCTGAAAATAGAAGAAGAAAGGATTTAGAATCTGGGCAGATTGCTTTTAAAACATTT------------------------CCAACCTTTGATCTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14286406 95 - 49578535 CTCAGCCAGTATA---ACCAC-CCCTCC------CCACCCCCAGTAAATGGAAGGAGAAAGGATTTAGAATCTGG-------GCTTTGAAAGCATTT------------------------CCAACCTGCTATCTA i calJac3.chr19 C 0 C 0 s mm10.chr1 178848140 101 + 195471971 CCCAGCAAGGCTA---CCCGCCCTTCCCGTACCACCCTCCCCTAGAGATACACAAAGGCAAGAGTTAGCATCTGAGCATGCTGCCTTCACAACA--------------------------------CTTGGACCTA i mm10.chr1 I 84 C 0 s canFam3.chr7 36429261 129 + 80974532 -CCAGTCGGCATAGCTACCACCTCCAAC------CCACCCCCTAAGAATACAAGAAGCAAGAGTTTAGAATCTGGGTGGGTCACTTTGAAAACATttcctgggtggcgcagcggtttggcgcctgcctttggccca i canFam3.chr7 C 0 I 137 a score=1143219.000000 s hg38.chr1_KI270759v1_alt 277414 368 + 425601 ATTT-----------------GTCATTATTATTTGTAGAGCTTTCTTTCTCTTCCTTCGTATCTCCTTTCATA----------------TCCGGAGCATTCCCAGGGAAGATCCCGTTGCTGAATA-CTCGTGTCTCCA-----GTTTTCTA--CCCG-GACTTAAAGATCTACTGGTCCTGCAGAGCTGAGCTCCAGTGGTGTGAAAGGCA-CGTGAGCgatgc----tgggct-tgtggagatgagtaacacacaggcttgctttcaaggcactc-----acagcctTACACATTTGAAAATGAG---TTTTTCAC-TGGAGCCTGA-----------AACTTCCAGATTTGAA-ACCATCTCCGGGGCCAAG----CCTGGCTGAGACTC--TCTCTCTCTGCATGAGCTGCCTGCCACCATCAGTTCCCCACCCAGATA s panTro4.chr1 225034168 368 + 228333871 ATTT-----------------GTCATTATTATTTGTAGAGCTTTCTTTCTCTTCCTTCGTATCTCCTTTCATA----------------TCCGGAGCATTCCCAGGGAAGATCCCGTTGCTGAATA-CTCGTGTCTCCA-----GTTTCCTA--CCCG-GACTTAAAGATCTACTGGTCCTGCAGAGCTGAGCTCCAGTGGTGTGAAAGGCA-CGTGAGCgatgc----tgggct-tgtggagatgagtaacacacaggcttgctttcaaggcactc-----acagcctTACACATTTGAAAATGAG---TTTTTCAC-TGGAGCCTGA-----------AACTTCCAGATTTGAA-ACCATCTCCGGGGCCAAG----CCTGGCTGAGACTC--TCTCTCTCTGCATGAGCTGCCTGCCACCATCAGTTCCCCACCCAGATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226403097 370 - 229942017 ATTT-----------------GTTATTATTATTTGTAGAGCTTTCTTTCTCTTCCTTCGTATCTCCTTTCATT----------------TCTGGAGCATTCCCAGGGAAGATCCCATTGCTGAATA-CTCGTGTCTCCA-----CTTTCCTA--CCCT-AACTTAAAGATCTACTGGTCCTGCAGAactgagctccagtcgtgtgaaaggcaccgtgagcgatac----tgggct-tgtggagatgagtaacacacaggcttgctttcaaggcactc-----acagtctTACACGTTTGAAAAGGAG---TTTTTCAC-TGGAGCCTGA-----------AACTTCCAGATTTGAATACCATCTCCGGGGCCAAG----GCTGGCTGAGACTC--TCTCTCTCTGCATGAGCTGCCTGCCACCATCAGGTCCCCACCCAGATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140286531 357 - 143122389 ATTT-----------------GTCGTTATTATTTGTAGAGCTTTCTTTCTCTT-CTTCATATCTCCTTTCATT----------------TCCGGAGCATTCCCA------------TTGCCGAATA-CTCGTGTCTCCA-----CTTTCCTA--CCCT-AACTTAAAGATCTACTGGTCCTGCAGAactgagctccagtcgtgtgaaaggcaccgtgagcgatac----tgggct-tgtggagatgagtaacacacaggcttgctttcaaggcattc-----acagtctTACACATTTGAAAATGAG---TTTTTCGC-TGGAGCCTGA-----------AACTTCCAGACTTGAATACCATCTCCGGGGCCAAG----CCTGGCTGAGACTC--TCTCTCTCTGCATGAGCTGCCTGCCACCATCAGTTCCCCACCCAGATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16994876 364 - 229590362 ATTT-----------------GTCATTATTATTTATAGAGCTTTCTTTCTCTTCCTTCGTATCTCCTTTCATT----------------TCCGGAGCATTCCCAGGGAAGATCCCACTGCTGAATA-CTCATGTCTCCA-----GTTTCCTA--CCCT-AAGTTAAAGATCTACTGGTCCTGCCAAactgagctccagttgtatgaaaggcaccgtgagtgatac----tgggct-tgtggagatgagtaacacacaggcttgctttccaggcactc-----acagtctTACACATTGGAAAATGAGCTTTTTTTTGC-TGGAGCCTGA-----------AGCTTCCAGATTTGAATACCATCCCTGGGGCCAAG----CCTGGTTGAGACTC--TCTCTCT---------CTGCCTACCACCATCATGTCCCCACCCAGACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223758327 364 - 227556264 ATTT-----------------GTCATTATTATTTATAGAGCTTTCTTTCTCTTCCTTCGTATCTCCTTTCATT----------------TCCGGAGCATTCCCAGGGAAGATCCCACTGCTGAATA-CTCATGTCTCCA-----GTTTCCTA--CCCT-AAGTTAAAGATCTACTGGTCCTGCCAAACTGAGCTCCAGTTGTATGAAAGGCACCGTGAGTgatac----tgggct-tgtggagatgagtaacacacaggcttgctttccaggcactc-----acagtctTACACATTGGAAAATGAGCTTTTTTTTGC-TGGAGCCTGA-----------AGCTTCCAGATTTGAATACCATCCCTGGGGCCAAG----CCTGGTTGAGACTC--TCTCTCT---------CTGCCTACCACCATCATGTCCCCACCCAGACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16808571 364 - 220367699 attt-----------------gtcattattatttatagagctttctttctcttccttcgtATCTCCTTTCATT----------------TCCGGAGCATTCCCAGGGAAGATCCCACTGCTGAATA-CTCGTGTCTCCA-----GTTTCCTA--CCCT-AACTTAAAGATCTACTGGTCCTGCCAAACTGAGCTTCAGTTGTATGAAAGGCACCGTGAGTGATAC----TGGGCT-TGTGGAGATGAGTAACACACGGGCTTGCTTTCCAGACACTC-----ACAGTCTTAAACATTGGAAAATGAGCttttttttGC-TGGAGCCTGA-----------AGCTTCCAGATTTGAGTACCATCCCTGGGGCCAAG----CCTGgttgagactc--tctctct---------ctgcctaccACCATCATGTCCCCAGCCAGACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82606752 363 + 85787240 ATTT-----------------GTCATTATTATTTATAGAGCTTTCTTTCTCTTCCTTCGTATCTCCTTTCATT----------------TCTGGAGCATTCCCAGGGAAGATCCCACTGCTGAATA-CTCGTGTCTCCA-----GTTTCCTA--CCCTAAACTTAAAGATCTACTGGTCCTGCCAAACTGAGCTCCAGTCATGTGAAAGGCACCGTGAGTGATAC----TGAGCT-TGTGGAGATGAGTAACACACAGGCTTGCTTTCCAGGCACTC-----AAAGTCTTACACGTTTGAAAATGAG--TTTTTTTGC-TGGAGCCTGA-----------AGCTTCTAGATTTGAATACCATCCCTGGGGCCAAG----CCTGGTTGAGACTC--TCTCTCT---------CTGCCTACCACCATCGTGTCCCCACCCAGACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14286501 371 - 49578535 ATTT-----------------GTCGTTATTATTTATAGAGCATTCTTTCT-TTCCTTCGCATCTCCTTTCATT----------------TCCAGAGCATTCTGAGGGAAGACGCGGCTTCTGAATACCTCCTGTCTCCA-----CTTCCCTAGCTCGT-AACTCAAACACCTCCCGGTCCTGCAGAGCTGAGCGCCAG---CGTGGAAGGCACTGGGAGCGAGAc----tggggt-tgtaaagatgagtaacacacaggcttgctttcaaggcactc-----ccagtctTACAAATTTGAAAATGAG---TTTTGGCC-TGGAGCCTGA-----------AACTTCCAGATTTGAATACTATCCCCAGGGCCAAG----CCTGGCTGAGACTCTGTCTCTCTCTGCATGAGCTGCCTGTCACCATCAGGTCCCCACCCAGATA i calJac3.chr19 C 0 I 148 s mm10.chr1 178848241 367 + 195471971 AGGT-----------------GCC---ATTCTTCATAGAACA------CTCGCCCTTCCAGTCTCCTTTTATC----------------TCCAGAGTCTTCCCAGTAAAGAT-CTATTTCTCACTA-CT------TCCAACCATGCTTCTTAAGTTCC-AACTTAAAAGCATTCTGGACCTATAGAACTGAGTGCTCACTGTGCAAAAGGTATCATCAGTGACAT----TAGGCTGTAAAAAGATGTATAAGTGGCAGGC-----TCCTGCACACTCCCAAACCAATCTTATTAATTTGGAAATGTG---TGCTTCACTTATAGCCTGACTGC--TGTGTAATCTTCAAATATGAATGCCAGCCACAGGGCTCAT----CCC-ACTGAGAGCC--TTTC---CAGCGCGAGCCACCTGCTACTGTCTGGT-CCCAGCCATACA i mm10.chr1 C 0 I 1 s canFam3.chr7 36429527 408 + 80974532 ATTTCCAACTCTTGACCTTAAGTCATTATTATTTCTGGAGCACTCTTTTTCTTCCTCCATATCACTTTGCACTTCCTTTTGTGCTCTCATCCAGAACCATCCCAAGGAAGACCCTGTTTCTGGATG-CTTCCATCTCT------CCTTTCTACCTCCC-AGATTGAAAACTTACTGGTCCCACAGAATCAAGCTCCAACTGTGTGAAAAGCA-CGTCAGTGTCTCTTGGTGGGGA-TGTAAGGATAAATAGGATGCAGGTTGTCCTTCCAGGTATGC-----ACAGTCTTAAAT-TTTGAAAAGGAG-TTTTTTTCCC-TAGAGCTTCACTGCCATGTATAACTGCCAAATCTGTGCACCGACTCCTGAGCTCAGCAGCCCTGGCTGAGAGTC--TCTC--------------AGCTGCCACCTCCATGT-CCTACGCAGACA i canFam3.chr7 I 137 C 0 a score=39000.000000 s hg38.chr1_KI270759v1_alt 277782 14 + 425601 -CCCAAGCCTGACCT s panTro4.chr1 225034536 14 + 228333871 -CCCAAGCCTGACCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226403467 14 - 229942017 -CCCAAGCCTGACCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140286888 14 - 143122389 -CCCAAGCCTGACCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16995240 14 - 229590362 -TCCAAGCCTGACCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223758691 14 - 227556264 -TCCAAGCCTGACCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16808935 14 - 220367699 -TCCAAGCCTGACCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82607115 14 + 85787240 -TCCAAGCCTGACCT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178848609 14 + 195471971 -CTCCATTCTAAATT i mm10.chr1 I 1 C 0 s canFam3.chr7 36429935 15 + 80974532 CCTTTACCCTAAGCT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14286872 148 - 49578535 I a score=1214596.000000 s hg38.chr1_KI270759v1_alt 277796 346 + 425601 TGACCTGCTGGGGGAAATTCATTATATTCTCGTTTACTCCA-T-TTT-ATAGACGAATGTTTCTTATCATGAATGAGAGTTCGTTAAATCAGCTGGTTCTAGGTGGAGTTCACTAGAG--CCCTCTCCAATGCTGCCGGAGGACCTGTTGCCGTCTGGGCTGTATTGTAGGTGGGTGGTATCATAATAAGATC-CGTGGT------ACACGAATGGGCTTCAGGGCAGGCCTGGGTTACATCACCA-CCTCACTTTCGGTGTGTCAAAGCTGGAAAAAACAGCTGGAAGGTGGCCAGTGTTCGCTTACCCAACGAAGCATGACTTTGCA-TCTCCTC-TACCCTGCCCAGT-GAGGGCTCCC s panTro4.chr1 225034550 346 + 228333871 TGACCTGCTGGGGGAAATTCATTATATTCTCGTTTACTCCA-T-TTT-ATAGACGAATGTTTCTTATCATGAATGAGAGTTCGTTAAATCAGCTGGTTCTAGGTGGAGTTCACTAGAG--CCCTCTCCAATGCTGCCGGAGGACCTGTTGCCGTCTGGGCTGTATTGTAGGTGGGTGGTATCGTAATAAGATC-CGTGGT------ACCCGAATGGGCTTCAGGGCAGGCCTGGGTTACATCACCA-CCTCACTTTCAGTGTGTCAAAGCTGGAAAAAACAGCTGGAAGGTGGCCAGTGTTCGCTCACCCAACGAAGCATGACTTTGCA-TCTCCTC-TACCCTGCCCAGT-GAGGGCTCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226403481 344 - 229942017 TGACCTGCTGGGGGAAATTCATTATATTCTCATTTACTCCA-T-TTT-ATAGATGAATGTTTCTTATCATGAATGAGAGTTTGTTAAATCAGCTTGTTCTAGGTGGAGTTCACTAGAG--CCCTCTCCAATGCTGCCCGAGGACCTGTTGCCATCTGGGCTGTATTATAGGTGGATGGTATC---ATAAGATC-CGTGGT------ACCTGAATGGGCTTCAGGGTGGGCCTGGGTTACATCACCACCCTCACTTTCAGTGTGTCAAAGCTGGAAAAAACAGCTGGAAGGTTGCCAGTGTTCGCTTACCCAACGAAGTATGACTTTGCA-TCTCCTC-TACCCTGCCCAGT-GAGGGCTCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140286902 347 - 143122389 TGACCTGCTGGGGGAAATTCGTTATATTCTCGTTTACTCCA-T-TTT-ATAGATGAATGTTTCTTATCATGAATGAGAGTTTGTTAAATAAGCTTGTTCTAGGTGGAGTTCACTAGAG--CCCTCTCCAATGCTGCCCGAGGACCTGTTGCCATCTGGGCTGTATTATAGGTGGATGGCATCATAATAACATC-CGTGGT------ACCCGAATGGGCTTCAGGGTAGGCCTGGGTTACATCACCACCCTCACTTTCAGGGTGTCAAAGCTGGAAAAAACAGCTGGAAGGTTGCCAGTGTTCGCTTACCCAACGAAGCATGACTTTGCA-TCTCCTC-TACCCTGCCCAGT-GAGGGCTCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16995254 348 - 229590362 TGACCTGCTGGGGGAAATTCATTATATTCTAATTTACTCCA-T-TTT-CTAGATAAATGTTTATTATCATGAATGAGAGTTTGTTAAATCAGCTTATTCTAGGTGGAGTTCACTAGAGAACCCTCTCCAAGGCTGCCCGAGGACCTGTTGCCATCGGGGCTGTATTATAGGTGGATGGTATCATAATAAGATC-CGTGGT------ACCTGAATAAGCTTCAGAGTAGGCCTGGGTTACATCTCCACCCTCACTTTCAGTGTATCAAAGCTGGAAAAAGCAGTTGGAAGGTTGCCAGTGTTCGCTTACCCAGCGAAGCATGACGTTGCA-TCTCCTC-TACCCTGCGCAGT-GAGGGCT-CC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223758705 349 - 227556264 TGACCTGCTGGGGGAAATTCATTATATTCTAATTTACTCCA-T-TTT-CTAGATAAATGTTTCTTATCATGAATGAGAGTTTGTTAAATCAGCTTATTCTAGGTGGAGTTCACTAGAGAACCCTCTCCAAGGCTGCCCGAGGACCTGTTGCCATCGGGGCTGTATTATAGGTGGATGGTATCATAATAAGATC-CGTGGT------ACCTGAATGAGCTTCAGAGTAGGCCTGGGTTACATCTCCACCCTCACTTTCAGTGTATCAAAGCTGGAAAAAGCAGTTGGAAGGTTGCCAGTGTTCGCTTACCCAACGAAGCATGACGTTGCA-TCTCCTC-TACCCTGCGCAGT-GAGGGCTCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16808949 349 - 220367699 TGACCTGCTGGGGGAAATTCATTATATTCTAATTTACTCCA-T-TTT-CtagataaatgtttcttatcatgAATGAGAGTTTGTTAAATCAGCTTATTCTAGGTGGAGTTCACTAGAGAACCCTCTCCAAGGCTGCCCGAGGACCTGTTGCCATCGGGGCTGTATTATAGGTGGATGGTATCATAATAAGATC-CGTGGT------ACCTGAATGAGCTTCAGAGTAGGCCTGGGTTACATCTCCACCCTCACTTTCAGTGGATCAAAGCTGGAAAAAGCAGTTGGAAGGTTGCCAGTGTTCGCTTACCCAACGAAGCATGACGTTGCA-TCTCCTC-TACCCTGCGCAGT-GAGGGCTCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82607129 348 + 85787240 TGACCTGCTGGGGGAAATTCATTATATTCTAATTTACTTCA-T-TTT-ATAGATAAATGTTTCTTATCATGAATGAGAGTTTGTTAAATCAGCTTGTTCTAGGTGGAGTTCACTAGAGAACCCTCTCCAAGGCTGCTCGAGGACCTGTTGCCATCTGGGCTGTATTATAGGTGGATGGTATCATAATAAGATC-CGT-GT------GTCTGAATGAGCTTCAGCGTAGGCCTGGGTTACATCTCCACCCTCACTTTCAGTGTATCAAAGCTGGAAAAAGCAGTTGGAAGGTTGCCAGTGTTCGCTTACCCAACGAAGCATGACGTTGCA-TCTCCTC-TACCCTGCGCAGT-GAGGGCTCCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14287020 347 - 49578535 TGTCTTGCTGGAGGAAATTCATGATCGTCTCGTTCACTCCATT-TTT-ATAGATGAATGTTTCTTAGCATGAATGAGAATTCAT----TCCGTTTGTTCTGGGTGGAGTTCACTAGAG--CCATCTCCACTGCTGCCCGAGGACCCACTGCCAGCTGGACTG--TTACAGGTGAATGGTATCAT--TAAGCTC-TGTGGTGCCTGAACCTGAATGGGCTTCAGGATAGGCCTGGGTTACATCACCA-CCTCATTTTCAGTGTGTCAGA-CTAGAAACAACAGCCGAGAGGCTGCTAGTGCTCACCCACTCCACAGAGCGTGATTCTGCATTCTCCTCTTCCCCTGCCCAGTGGAGTGCCCCC i calJac3.chr19 I 148 M 414 s mm10.chr1 178848623 330 + 195471971 TGACCTTCTCAGGGAAAGTCATTATAGCCTACGTGACTCCA-TGTTG-ATAGCTGAATGTTTTTTATCATGAGTGAGAGTTTATTCAATCAGCTCATTCTGAGTGGAGGTCACCAGCA--GCCCTTTCAGGGCTGCCTGAGAGCGCTTTGTTGTCTGGATTATGTCATAGATGGGTAGCATCATAATAAGATT-CCTGGT------ACCTGATTGAGCATCGAGATGAATCTGGGTTATATCCT---CTTTATTTTCAGTGT--------TGACACA-----CTGGCAGGTTGCCAGGGTTTATGTACCCAACAGTGAATAGTGTTGTG-TCAGCTC-TGCCCCATCCAGA-CAGGCATA-- i mm10.chr1 C 0 C 0 s canFam3.chr7 36429950 348 + 80974532 CAGCCTTCTGGGGGAAATTCATTATAGTCTCACTTACTCCT-T-TTTGGTAGATGAGTGTTTCTTATCATGCATAAGGTTTTACTAAATCAGTTCATTCTGAGTGGAGTTCTCTAGAG---CCCCCCTGATGCTACCAGGGGGCACTTGGCCATCTGGACTGTGTTAGAGGTGGACAGGATGATAATAAGATCTCCTGGT------ACCTAAATGGGCTTCAGGATGGATCTGGGTTCCATCATTGTTCCCACTTGTAATACGTTATAGCTGGAAAAACTGGCTAGACGGTTATGGGTTTCCACCTACCCAACAAAAGCAAAATTAGCA-TTTCCTC-TGCCCTACCCAGG-AAGTGTTCTG i canFam3.chr7 C 0 C 0 a score=67816.000000 s hg38.chr1_KI270759v1_alt 278142 23 + 425601 TGTTTTGAAGGACTGGCATATTC s panTro4.chr1 225034896 23 + 228333871 TGTTTTGAAGGACTGGCATATTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226403825 23 - 229942017 TGTTTTGAAGGACTGGCATACTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140287249 23 - 143122389 TGTTTTGAAGGACTGGCATATTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16995602 23 - 229590362 TGTTTTGAAGGCCTGGCATATTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223759054 23 - 227556264 TGTTTTGAAGGACTGGCATATTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16809298 23 - 220367699 TGTTTTGAAGGACTGGCATATTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82607477 23 + 85787240 TGTTTTGAAGGACTGGCATATTC i chlSab2.chr25 C 0 C 0 s mm10.chr1 178848953 16 + 195471971 TGTTTTCAGTGACAGG------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36430298 23 + 80974532 TGTTTTCAGTGACCAGTTTATTC i canFam3.chr7 C 0 I 221 e calJac3.chr19 14287367 414 - 49578535 M a score=289847.000000 s hg38.chr1_KI270759v1_alt 278165 117 + 425601 TGGAATGCTTCCACCAAATCCAAACATCATTCTGGATGAACTGTGGAG-------CAGTTCACCGTTCACAGTTCACAAAAGGACCCTCTGTAGAAGCAGAGGATCTTTCCCTGGGGAAATTAT s panTro4.chr1 225034919 117 + 228333871 TGGAATGCTTCCACCAAATCCAAACATCATTCTGGATGAACTGTGAAG-------CAGTTCACCGTTCACAGTTCACAAAAGGACCCTCTGTAGAAGCAGAGGATCTTTCCCTGGGGAAATTAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226403848 115 - 229942017 TGGAATGCTTCCACCAAATCCAAACATCATTCTGGATGAACTGTGAAG-------CAGTTCACAGTTCACAGTTCACCGAAGGACCCTCTGTAGAAGCAGAGGATCTTTCCCTGGG--AATTAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140287272 110 - 143122389 TAGAATACTTCCACCAAATCCAAACATCATTCTGGATGAACTGTGAAG-------CA-------GTTCACAGTTCACAAAAGGACTCTCTGTAGAAGCAGAGGATCTTTCCCTGGGGAAATTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16995625 124 - 229590362 TGGAATACTTCCACCAAATCCAAACATCATTCTGGATTAACTGTGAAGCAGTTCACAGTTCACAGTTCACAGGCCACAAAAGGATCCTGTGTAGAAGCGGAGGATCTTTCCCTGGGGAACTTAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223759077 124 - 227556264 TGGAATACTTCCACCAAATCCAAACATCATTCTGGATGAACTGTGAAGCAGTTCACAGTTCACAGTTCACAGGCCACAAAAGGATCCTGTGTAGAAGCGGAGGATCTTTCCCTGGGGAACTTAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16809321 117 - 220367699 TGGAATACTTCCACCAAATCCAAACATCATTCTGGATGAACTGTGAAG-------CAGTTCACAGTTCACAGGCCACAAAAGGATCCTGTGTAGAAGCGGAGGATCTTTCCCTGGGGAACTTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82607500 117 + 85787240 TGGAATACTTCCACCAAATCCAAACATCATTCTGGATGAACTGTGAAG-------CAGTTCACAGTTCACAGGCCACAAAAGGATCCTGTGTAGAAGCGGAGGATCTTTCCCTGGGGAACTTAC i chlSab2.chr25 C 0 C 0 s mm10.chr1 178848969 52 + 195471971 --------TTCCATCAAATTCAAATGTCAATCTGGAGGAATTATGACT-------GAGT---------------------------------------------------------GAAATTAT i mm10.chr1 C 0 C 0 s canFam3.chr7 36430542 81 + 80974532 TGAAATACTTCCATCAAATTTAGACATCGTTCTGGATGAACTTTGACC-------------------------------------------TAGAAGCAGAGGCTCCTTCCCCAGTGAAATGAT i canFam3.chr7 I 221 C 0 e calJac3.chr19 14287367 414 - 49578535 M a score=98772.000000 s hg38.chr1_KI270759v1_alt 278282 24 + 425601 CCTAAGTCTTCTGATTTTAATAAC s panTro4.chr1 225035036 24 + 228333871 CCTAAGTCTTCTGATTTTAATAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226403963 24 - 229942017 CCTAAGTCTTCTGATTTTAATAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140287382 24 - 143122389 CCTAAGTCTTCTGATTTTAATAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16995749 24 - 229590362 CCTAAGTTTTCGGATTTTAATAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223759201 24 - 227556264 CCTAAGTTTTCGGATTTTAATAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16809438 24 - 220367699 CCTAAGTTTTTGGATTTTAATAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82607617 24 + 85787240 CCTAAGTCTTCGGATTTTAATAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14287781 24 - 49578535 CCTAAGTTTTCTGCTTTTAATAAC i calJac3.chr19 M 414 C 0 s mm10.chr1 178849021 24 + 195471971 CCTAAGCCCTCAGCTTTTAAAATC i mm10.chr1 C 0 C 0 s canFam3.chr7 36430623 24 + 80974532 CCTAAGTTTTTGAATTTTAATAAC i canFam3.chr7 C 0 C 0 a score=7416.000000 s hg38.chr1_KI270759v1_alt 278306 2 + 425601 tg s panTro4.chr1 225035060 2 + 228333871 tg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226403987 2 - 229942017 tg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140287406 2 - 143122389 tg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16995773 2 - 229590362 tg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223759225 2 - 227556264 tg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16809462 2 - 220367699 TG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82607641 2 + 85787240 tg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14287805 2 - 49578535 tg i calJac3.chr19 C 0 C 0 s mm10.chr1 178849045 2 + 195471971 TA i mm10.chr1 C 0 I 464 e canFam3.chr7 36430647 0 + 80974532 C a score=889969.000000 s hg38.chr1_KI270759v1_alt 278308 317 + 425601 atatagttcaagtatttgtccccgc-ccaaatctcatgttcactgttaatccccagtgctggaggtggggcctggcgggaggtgactgcatcatg------gatccctcgtgactcggtgccatcctcatgatagtgagttctcccaagatccggtcatttaaaagtgtgtgtttcctgccccgtctcatgctcccattctcatcacgtgatgtgcctgctcccacttcaccttccaacttgagtcagagctccctgaggcttccctagaggctgagcagatgccagtgtcatgcatacacagcctgcagaaccatgagccaat s panTro4.chr1 225035062 317 + 228333871 atatagttcaagtatttgtccccgc-ccaaatctcatgttcactgttaatccccagtgctggaggtggggcctggcaggaggtgactgcatcatg------gatccctcgtgactcggtgccatcctcatgatagtgagttctcccaagatccggtcatttaaaagtgtgtgtttcctgccccgtctcatgctcccattctcatcacgtgatgtgcctgctcccacttcaccttccaacttgagtcagagccccctgaggcttccctagaggctgagcagatgccagtgtcatgcgtacacagcctgcagaaccatgagccaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226403989 317 - 229942017 atatagttcaagtatttgtccccac-ccaaatctcatgttcactgttaatccccagtgctggaggtggggcctggcgggaggtgactgcatcatg------gatccttcatgacttgatgccatcctcgtgatggtgagttctcccaagatccagtcatttaaaagtgtgtgtttcctgccccgtctcatgctcccattctcatcacgtgatgtgcctgctcccacttcaccttccaacttgagtcaaagctcgctgaggcttccctagaggctgagcagatgccagtgtcacacttccacagcctgcagaaccatgagccagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140287408 311 - 143122389 atatagttcaagtatttgtccccgc-ccaaatctcatgttcactgttaatccccagtgctggaggtggggcctggcaggaggtgactgcatcatg------gatccctcatgacttggtgccatcctcgtgat----agttctcctaagatccggtcatttaaaagtgtgtgtttcctgccccgtctcctgctctcattctcatcacgtgatgtgtctgctcccacttcaccttccaacttgagtgaaagctccctgaggcttccctagaagctgagcagag--cagtgtcacgcttccacagcctgcagaaccatgagccaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16995775 315 - 229590362 atatagttcaagtatttgtccctgc-ccaaatctcaggttaactgttaatccccagtgctggaggt-gggccgggcgggaggtgactgcctcatg------gttccctcgtgacttggtgctatcctcgtgatcgtgagttcacccaagatccggtcatttaaaagtgtgtgtttcctgccccctctcctgctcccattctcatcacgtgatgtgcctgctgccacttc-ccttccaacttgagtcgaagctccctgaggcctccccagaagctgagcagatgccagtgtcctgcttacacagcccgcagaaccgtgagccagt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223759227 315 - 227556264 atatagttcaagtatttgtccctgc-ccaaatctcaggttcactgttaatccccagtgctggaggt-gggccgggcgggaggtgactgcatcatg------gttccctcgtgacttggtgctgtcctcgtgatagtgagttcacccaagatccggtcatttaaaagtgtgtgtttcctgccccctctcctgctcccattctcatcatgtgatgtgcctgctgccacttc-ccttccaacttgagtcgaagctccctgaggcctccccagaagctgagcagatgccagtgtcctgcttacacagcccgcagaaccgtgagccagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16809464 315 - 220367699 ATATAGTTCAagtatttgtccctgc-ccaaatctcaggtTCACTgttaatccccagtgctggaggt-gggccGGGCGGGAGGTGACTGCATCATG------GTTCCCTCGtgacttggtgctgtccttgtgatagtgagttcacCCAAGATccggtcatttaaaagtgtgtgtttcctgccccctctcctcctcccattCTCATCACGTGATGTGCCTGCTGCTACTTC-CCTTCCAACTTGAGtcgaagctccctgaggcctccccagaagctgagcagatgccagtgtCCTGCTTACACAGcccgcagaactgtgagccagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82607643 316 + 85787240 atatagttcaagtatttgtccctgc-ccaaatctcaggttcactgttaatccccagtgctggaggtggggccgggcgggaggtgactgcatcatg------gttccctcgtgacttggtgctgtcctcgtgatagtgagttcacccaagatccggtcatttaaaagtgtgtgtttcctgccccctctcctgctcccattctcatcacgtgatgtgcctgctgccacttc-ccttccaacttgagttgaagctccctgaggcctccccagaagctgagcagatgccagtgtcctgcttacacagcctgcagaactgtgagccaat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14287807 311 - 49578535 atatagttcaagtatttgtccccactccaaatctcgtgttcactattaatccccagtgctagaggg-gagcctggtgggaggggactgggtcatgggagtagatccctcatgacttg-tgctgtcctcacgatcatgcgttctccccagatctggtcatttaaaagtatgtgtttcctg-tccgtcccctgctcccattctcgccacatgatatgcctgct-ccacttcaccttccgacttgagtaaaagctccctgaggcctccctagaagctgagctgatgccagtgt---------acagcatgcagaaccatgagccacg i calJac3.chr19 C 0 C 0 e mm10.chr1 178849047 464 + 195471971 I e canFam3.chr7 36430647 0 + 80974532 C a score=227939.000000 s hg38.chr1_KI270759v1_alt 278625 76 + 425601 taaacctcttttct-ttataaa-tacccagacttgggtatttctttatagcaatgcaagaacggcctaatacaATAAT s panTro4.chr1 225035379 76 + 228333871 taaacctcttttct-ttataaa-tacccagacttgggtatttctttatagcaatgcaagaacggcctaatacaATAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226404306 76 - 229942017 taaacctcttttct-ttataaa-tatccagacttgggtatttctttatagcaatgcaagaacggcctaatacaATAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140287719 76 - 143122389 taaacctcttttct-ttataaa-tacccagacttgggtatttctttatagcaatgcaagaatggcctaatacaATAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16996090 76 - 229590362 tacacctcttttct-tcataaa-tacccagactccggtatttctttatggcaatgcaagaacggcctaatacaATAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223759542 76 - 227556264 tacacctcttttct-tcataaa-tacccagactccggtatttctttatggcaatgcaagaacggcctaatacaATAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16809779 76 - 220367699 tacacctcttttct-ttataaa-tacccagactcgggtatttctttatggcaatgcaagaACGGCCTAATACAATAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82607959 76 + 85787240 tacacctcttttct-ttataaa-tacccaggcttgggtatttctttatggcaatgcaagaacggcctaatacaATAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14288118 77 - 49578535 taaacctcttttct-ttgtaaattactcagcttcaggtatttttttatagcagtgcaagaacggcccaatacaATAAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178849511 71 + 195471971 tgggtctcctccctgtttcaaa-ggatctgattaagaaactacctcacagcagtggtccagtggctt------gtagt i mm10.chr1 I 464 C 0 e canFam3.chr7 36430647 0 + 80974532 C a score=1545067.000000 s hg38.chr1_KI270759v1_alt 278701 449 + 425601 TGTT-------TTCCACATGAAATAAA-------------------CATTG-ACCGTCTTATCCAACTATACATGCTTCTTGACTCTAGAAATTGTTGAATGGAAGTGCTAAAGATTATC-------------------------CTCAAACACACTCATGTG-----------------------------------------------------------------------------CACACAGTTT-CAGTGCCAGAACAGTGTCCT-----------------------------------------------CTAGGAGGAAAGATGGTCCCAGAGCAATTACTGGTTTCCTTTAATTTTGGCTTCCTAATGAGTATCATTTTGGTACGATTCCAATGAATTGTTTATTTGAGGAAAGAGAAAAAGAAAAGAACCTATAGGAAGAGTTGGTTTGGATTCTATCGCGGGCAGTTTATGCTTCTACGATAGTAATAAAAGCAATGAGAGAA--AAAAGCTACAGAACCAAATAAATATAGATCCAGGAGTTGTACAACTTTTAAAAGAAAAATTCTTTAGCCTATTGATCCTTCCTAAGGTAAACATTTATTTTATTT-----CAGTTT s panTro4.chr1 225035455 476 + 228333871 TGTT-------TTCCACATGAAATAAA-------------------CATTG-ACCATCTTATCCAACTATACATGCTTCTTGACTCTAGCACTTGTTGAATGGAAGTGCTAAAGATTATC-------------------------CTCAAACACACTCATGTG-------------------------------------CACACACCCACCCAC-------------CATACTCATGCACACACAGTTT-CAGTGCCAGAACAGTGTCCT-----------------------------------------------CTAGGAGGAAAGATGGTCCCAGAGCAATTACTGGTTTCCTTTAATTTTGGCTTCCTAATGAGTATCATTTTGGTACAATTCCAATGAATTGTTTATTTGAGGACAGAGAAAAAGAAAATAACCTATAGGAAGAGTTGGTTTGGATTCTATTGCGGGCAGTTAATGCTTCTACAATAGTAATAAAAGCAATGAGAGAA--AAAAGCTACAGAACCAAATAAATATAGATCCAGGAGTTGTACAACTTTTAAAAGAAAAATTCTTTAGCCTATTGATCCTTCCTAAGGCAAACATTTATTTTATTT-----CAGTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226404382 476 - 229942017 TGTT-------TTCCACATGAAATAAA-------------------CATTG-ACCATCTTATCCAACTATACATGCTTCTTGACTCTAGAAATTGTTGAATGGAAGTGCTAAAGATTATC-------------------------CTCAAACACACTCGTGCA-------------------------------------CACTCACCCACCCAC-------------CATACTCATGCACACACAGTTT-CAGTGCCAGAACAGTGTTCT-----------------------------------------------CTAGGAGGAAAGATGGTCTCAGAGCAATTACTGGTTTCCTTTAATTTTGACTTCCTAATGAGTATAATTTTGGTACGATTCCAATGAATTGTTTATCTGAGGAAAGAGAAAAAGAAAAGAACCTATAGGAAGAGTTGGTTTGGATTCTATTGCGGGCAGTTTATGCTTCTATGATAGTAATAAAAGCAATGGGAGAA--AAAAGCTGCAGAACCAAATAAATATAGATCCAGGAGTTGTACAACTTTTAAAAGAAAAATTCTTTAGCCTATTGATCCTTCCTAAGGTAAATATTTATTTTATTT-----CAGTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140287795 478 - 143122389 TGTT-------TTCCACATGAAATAAA-------------------CATTG-ACCATCTTATCCGATTATACATGCTTCTTGACTCTAGAAATTGTTGAATGGAAGAGCTAAAGATTATC-------------------------CTCGAACACACTCATGTG-----------------------------------CACACTCACCCACTCAC-------------CATACTCATGCACACACAGTTT-CAGTGACAGAACAGTGTTCT-----------------------------------------------CTAGGAGGAAAGATGGTCTCAGAGCACTTACTGGTTTCCTGTAATTTTGACTTCATAATGAGTATAATTTTGGTGCGATTCCAATGAATTGTTTATTTGAGGAAAGGGAGAAAGGAAAGAACCTATAGGAAGAGTTGGTTTGGATTCTATTGCAGGCAGTTTATGCTTCTATGATAGTAATAAAAGCAATGGGAGAA--AAAAGCTACAGAACCAAATAAATATAGATCCAGGAGTTGTACAACTTTTAAAAGAAAAACTCTTTAGCCTATTGATCCTTCCTAAGGCAAACATTTATTTTATTT-----CAGTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16996166 474 - 229590362 CGTT-------TTCCACATGAAATAAA-------------------CATTG-ACCATCTTATCCAACTATACGTGCTTCTTGACTCTAGAAATTGTTGAATGGAAGAGCTAAAGATCATC-------------------------CTCGAACACACTCATGTG---------------------------------------CACACCCACCCAT-------------CGCACTCATGCACACATGGTTT-CAGTGCCGGAACAGCGTTCC-----------------------------------------------CTAGGAGGAAAGACGGCCCCAGAGCAATTGCTGGTTTCCTTTCATTTTGGCTTCCTAATGAATATAATTTTGATACGATTCCAAAGAATTGTTTATTTGAGGAAAGAGAAAAAGAAAAGAACCTATAGGAAGAGTTGGTTTGGGTTCTATTGCAGGTAGTTTATGCTTCTATGATAGTAATAAAAGCAATGGGAGAA--AAAAGCTACAAAACCAAGTAAATACAGATCCAGGAGTTGTGCAAGTTTTAAAAGAAAAATTCTTTAGCCTGTTGATCCTTCCTAAGGTAAACATTTATTTTATTT-----CACTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223759618 474 - 227556264 CATT-------TTCCACATGAAATAAA-------------------CATTG-ACCATCTTATCCAACTATACGTGCTTCTTGACTCTAGAAATTGTTGAATGGAAGAGCTAAAGATCATC-------------------------CTCGAACACACTCATGTG---------------------------------------CACACCCACCCAT-------------CGCACTCATGCACACATGGTTT-CAGTGCCGGAACAGCGTTCC-----------------------------------------------CTAGGAGGAAAGACGGCCCCAGAGCAATTGCTGGTTTCCTTTCATTTTGGCTTCCTAATGAATATAATTTTGATACGATTCCAAAGAATTGTTTATTTGAGGAAAGAGAAAAAGAAAAGAACCTATAGGAAGAGTTGGTTTGGGTTCTATTGCAGGTAGTTTATGCTTCTATGATAGTAATAAAAGCAATGGGAGAA--AAAAGCTACAAAACCAAGTAAATACAGATCCAGGAGTTGTGCAAGTTTTAAAAGAAAAATTCTTTAGCCTGTTGATCCTTCCTAAGGTAAACATTTATTTTATTT-----CACTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16809855 474 - 220367699 CGTT-------TTCCACATGAAATAAA-------------------CATTG-ACCATCTTATCCAACTATATGTGCTTCTTGACTCTAGAAATTGTTGAATGGAAGAGCTAAAGATCATC-------------------------CTCGAACACACTCATGTG---------------------------------------CACACCCACCCAT-------------CGCACTCATGCACACATGGTTT-CAGTGCCGGAACAGCGTTCC-----------------------------------------------CTAGGAGGAAAGACGGCCCCAGAGCAATTGCTGGTTTCCTTTCATTTTGGCTTCCTAATGAATATAATTTTGATACGATTCCAAAGAATTGTTTatttgaggaaagagaaaaagaaaagaacctatAGGAAGAGTTGGTTTGGGTTCTATTGCAGGTAGTTTATGCTTCTATGATAGTAATAAAAGCAATGGGAGAA--AAAAGctacaaaaccaaataaatacaGATCCAGGAGTTGtgcaagttttaaaagaaaaattctttagCCTGTTGATCCTTCCTaaggtaaacatttattttattt-----cacttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82608035 470 + 85787240 CGTT-------TTCCACATGAAGTAAA-------------------CATTG-ACCATCTTATCCAACTATACGTGCTTCTTGACTCTAGAAATTGTTGAATGGAAGAGCTAAAGATCATC-------------------------CTCGAACACACTCATGTG---------------------------------------CACACCCACCCAT-------------CGCACTCATGCACACATGGTTT-CAGTGCCAGAACAGCGTTCT-----------------------------------------------CTAGGAGGAAAGACGGCCCCAGAGCAATTGCTGGTTTCCTTTCATTTTGGCTTCCTAATGAGTATAATTTTGATACGATTCCAAAGAA----TTATTTGAGGAAAGAGAAAAAGAAAAGAACCTATAGGAAGAGTTGGTTTGGGTTCTATTGCAGGTAGTTTATGCTTCTATGATAGTAATAAAAGCAATGGGAGAA--AAAAGCTACAAAACCAAATAAATACCGATCCAGGAGTTGCGTAAGTTTTAAAAGAAAAATTCTTTAGCCTGTCGATCCTTCCTAAGGTAAACATTTATTTTATTT-----CACTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14288195 490 - 49578535 TACT-------TTCCCTGTGAAATAAA-------------------CATTG-ACCATCTTATCCAACTATGCATGCTTCTCAATTCTAGAAATTGTTGAATGAAAGAGCTAAAGAGTATC-------------------------CTCGAAAACACTCATGCca---------------------cacacacaca-cacacacacacacacCCCTA----------TGCATACTGATGCACACACAGTTT-CAGT-CCAGGACGGT-TTCT-----------------------------------------------CTGGGAGGAAGGATGGTCTCAGA--AATTATTGGTTTCCTTTAATTTTGACTTCCTAATGAATATGATTTTGATAAGATTCCAAAGACTTGTTTACTTGAGGAAAGAAAAAAAGAAAAGAACCTAGAGGCAGAGTTGGTTTGGATTCTGTTGTGGGCAGTTTATGTTTCTATGACAGTAATAAAAGCAATGAGAGAA--AAAAGCTATAGAATCAAATAAATAGAGATCCAGGACTTGTGTAACTTTTAAAAGAAAGATTATTTAGCCTATTGATTCTTCCTAAGGTAAACATGAACTTTATTT-----CACTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178849582 588 + 195471971 tgtttagttaatttcaaatgcagtcaagctgacaaccaagattagtcatcacaCCGTCCTCCTCAACTGTGTGTACATATTCATTCTAGAAACTGTCAAATACAATCATTAAACATTATCCAAAGCATACTAACTCTTACACATACACACACACATTCATTCACAGCAATTTGTGTACATTTTATTATATGCACACCATAAGTACACGTACCCTTGCCTGCACATTTTTGTGCACATATACACAAAAGCA-CACAGTCAAATTTGTGGTCTCACGTACATACACTTACACACAAACACATACACACTCCATTTCAATGCCAAGAGGAAGAGTGGTCTCAAA-TAGTTGTTAGTTTCTTTTAATATTGATTTCCC-ATGTGCATTA-TTTAGTAAGAAGTCAAATAAGTGATTA---------AGAAAAAAAGTCAAGA--CTATAGAAGAATTGGGTTT--ATTCTATTGTGGGATGTTTATGCTTCAATAACAACAATAA---CAATAAAGGTG--AAAGGGTGT-----------GATACGGAACC------------ACTTTCAACTGAAAAGTTCCTGAGCCAGTTCATCCTTTCAGATGCTAACACTTAACCCAGTTATACACAgttt i mm10.chr1 C 0 I 123 s canFam3.chr7 36430647 462 + 80974532 TGTT-------TTCCACACAAAATAAA-------------------TATTG-ACCATTCTACTCAACCATGAGTGCTTATTGATTCTAGAAATTGT-AAGTGGATGTGTTAAACATTATT----------------------------AAacatgcacatgca---------------------------------------tacacacatg----------------cgcacgcacacgcacagacTTTGCAGAGCCAGAACAGCGTTCT-----------------------------------------------CCTGGAGGAATGATGGTCTTGGGACAATTGTTGGTTTCCTTTAATATTGATTTCCTAAGAAGTATTATTTCTATGAGATCCTCTATAATCATTTATTTGAAGACAGAGAAGCAGAAAAGAACCTAAAGGAAGGATTGGTTTGGATCCTGCCATAGAAAGTTTATGGCTCTGTATGAGTAATAA-AGCAGTGGGGGCAGGGGAGACTGCAGAACCTAAGAAGTATAGAT-CAAGATTTGGGCTACTTTCAGAAGAAGGGCCCTTTAACCTGGTGATCCTTACTAAGAACAACACTTACT-----------CACTTT i canFam3.chr7 C 0 C 0 a score=218356.000000 s hg38.chr1_KI270759v1_alt 279150 66 + 425601 AGAACTCAAGAATTTTTTTCAAGTACAACTGAGGAATAGAGTCAGAAGCCACTTCGATTTTGACAC s panTro4.chr1 225035931 66 + 228333871 AGAACTCAAGAATTTTTTTCAAGTACAACTGAGGAATAGAGTCAGAAGCCACTTCGATTTTGACAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226404858 66 - 229942017 AGAACTCAAGAATTTTTTTCAAGTACAACTGAGGAATAGAGTCAGAAGCCACTTCGATTTTGACAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140288273 66 - 143122389 AGAACTCAAGAATTTTTTTCAAGTAGAACTGAGGAATAGAGTCAGAAGCCACTTCGATTTTGACAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16996640 66 - 229590362 AGAACTCAAGAATTTGTTTCAAGAACAACTGAGGAATAGAGTCAGAAGCCACTTCCATTTTGACAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223760092 66 - 227556264 AGAACTCAAGAATTTGTTTCAAGAACAACTGAGGAATAGAGTCAGAAGCCACTTCCATTTTGACAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16810329 66 - 220367699 agaaCTCAATAATTTGTTTCAAGAACAACTGAGGAATAGAGTCAGAAGCCACTTCCATTTTGACAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82608505 66 + 85787240 AGAACTCAAGAATTTGTTTCAAGAACAACTGAGGAATAGAGTCAGAAGCCACTTCCATTTTGACAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14288685 64 - 49578535 AGAACTCAGGAATTTTTTTCAAGTACGACTGTGGA--AGAGTCAGAAGCCACTTTCATTTTGATGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36431109 63 + 80974532 AGAGCTCGAGAGTTTTCCTCAAGTAGTATAGGGA---ACAGTCAGAAGCCTCTTCCACTTTGACAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178850170 123 + 195471971 I a score=139461.000000 s hg38.chr1_KI270759v1_alt 279216 42 + 425601 CATAGAAACATTCTTTC-TTTAGTTACTAGAATCTTTTAAATT s panTro4.chr1 225035997 42 + 228333871 CATAGAAACATTCTTTC-TTTAGTTACTAGAATCTTTTAAATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226404924 42 - 229942017 CGTAGAAACATTCTTTC-TTTAGTTACTAGAATCTTTTAAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140288339 42 - 143122389 CATAGAAACATTCTTTC-TTTCGTTCCCAGGATCTTTTAAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16996706 42 - 229590362 CATAGAAACATTCTTTC-TTTAGCTACCAGAATCTTTTAAATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223760158 42 - 227556264 CATAGAAACATTCTTTC-TTTAGCTACCAGAATCTTTTAAATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16810395 42 - 220367699 CATAGAAACATTCTTTC-TTTAGCTACCAGAATCTTTTAAATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82608571 41 + 85787240 CATAGAAACATTC-TTC-TTTAGCTACCAGAATCTTTTACATG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14288749 42 - 49578535 CATGGAAACATTCTTTC-CTTGGTGACCAGATTCTTTAAAATG i calJac3.chr19 C 0 I 299 s mm10.chr1 178850293 43 + 195471971 CATAGAAAATTTCTTTCAACCTGGTACCTGGCTCTTAAACATT i mm10.chr1 I 123 C 0 s canFam3.chr7 36431172 41 + 80974532 CACCAAAATGTTC-TTC-TTTGGCTACCAGAATCTTTAAAATT i canFam3.chr7 C 0 C 0 a score=384380.000000 s hg38.chr1_KI270759v1_alt 279258 105 + 425601 GATAAGATTGGCATTTTCCCAGGATATAACATTCACCTCCACTGTGTTTTTAATTTGCAATAGA--TTTTGAGGGAAAGATTCCACAAGGATTTGGCCAACATGCCT s panTro4.chr1 225036039 105 + 228333871 GATAAGATTGGCATTTTCCCAGGATGTAACATTCACCTCCACTGTGTTTTTAATTTGCAATAGA--TTTTGAGGGAAAGATTCCACAAGGATTTGGCCAACATGCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226404966 105 - 229942017 GATAAGATTGGCATTTTCCCAGGATATAACATTCACCTCCATTGTGTTTTTAATTTGCAATAGA--TTTTGAGGGAAAGATTCCACAAGGATTTGGCCAACATGCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140288381 105 - 143122389 GATAAGATTGGCATTTTCCCGGGATATAACATTCACCTCCATTGTGTTTTTAATTTGCAATAGA--TTTTGAGGGAAAGATTCCACAAGGATTTGGCCAACATGCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16996748 105 - 229590362 GATAAGATTGGCATTTTCCCAGGATATAACATTCACCTCCATTGTGTTTTTAATTTGCAATGGA--TTTTGAGGGAAAGATTCCACAAGGATTTGGCCCACATGCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223760200 105 - 227556264 GATAAGATTGGCATTTTCCCAGGATATAACATTCACCTCCATTGTGTTTTTAATTTGCAATGGA--TTTTGAGGGAAAGATTCCACAAGGATTTGGCCCACATGCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16810437 105 - 220367699 GATCAGATTGGCATTTTCCCAGGATATAACATTCACctccattgtggttttaatttgcaatggA--TTTTGAGGGAAAGATTCCACAAGGATTTGGCCCATATGCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82608612 105 + 85787240 GATAAGATTGGCATTTTCCCAGGATATAACATTCGCCTCCATTGTGTTTTTAATTTGCAATGGA--TTTTGAGGGAAAGATTCCACAAGGATTTGGCCCACATGCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14289090 105 - 49578535 GATAAGATTGGCATTTTCCCAGGATATAACATTGACCTCCATTGTGTTTTTGA--TGGAATAGCTTTTTTGAGGGAAAGATTCCACAAGGAATCAGCCAACATGCCT i calJac3.chr19 I 299 C 0 s mm10.chr1 178850336 102 + 195471971 GGTAAGGTTGTCA-TCTCCTAAAATGTAACACTCACAGTCCTTGTGGTTTTGATTGACATTGGG-GCTGTCAAAGAGTCGTTCC---GGGATGAGGCTGGCCTGCCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36431213 104 + 80974532 AATAAGAAGGTCATTTCCCCAGAATGTAACATTCACATCAGTAGTG-TTTGGACTCACGATGGA--GCCTGAGGGAAAGCTTCCTTGAGGATGAAGCCAACATACCT i canFam3.chr7 C 0 I 132 a score=3046368.000000 s hg38.chr1_KI270759v1_alt 279363 915 + 425601 CCTGAGcagtgggtct-ca---agtgt----------ggtccccagacca--gcatgatccc-------------cat-cagctg---------------gaaact--gttag-----aaatgcaaattgtcaggccctaccccagacccactgaatcagaaactctgggagg--ggaaaccaac--------------------------------aatctgtgtttcaaca------TGAAGTC-TGAGAACTT-AAACTATGCACCGTTCTTG-GTAAGAAAATAAGAGTTTTCCTT-TGTGTGCGTATGTGAAACCAATTCCCTGCAACCCACA----------GTTGTTTAAACAAAAA---CGTGTCTAGGGAGTTCAAATTAGGTGGCCAATTGCCTTATAAAAGTTTACAAAGTAAAGAGTCTGTGCTGTTTCCGTTAGGAGACAGAAACCCAATCACTAACTTGGAGTATGAGTCAGAGGCAGGACAGAGAAATGTCTGTCTAGTCGGTGAGCTAATTAATACGTGATCCTGAGGATGGAGGAGCCAGGGCTGCCGTTCCTTCTCCACTAGGGAAAAAAAAAAAAGATGTTTCTCTGTCAGGCAGCTCCCTAGCTACCTCCAGTATGTTCTA-TTCCATGGCTAGAGGAGTGCAGCCTACATCCTGTGGATTTATGTATATTACTGTAAAACAA-GCTTTCTCTTCTCGAGAGTTCCGAAGCAGATCTGTCTC-TGATTCTTTCCATGAATTCAAA-TACATTGTCATCCTTAGGTTTCCTAGGTAAAGG---AGACTGCATTACTCATCAGCA-TTTAATAAATATTCATTTGTTGGTTGACTGATTCATTATCCTTCATGCCA-ATCACATGGCTGCTACTAGC-----------ATGCATACAGCCGACTCTTAA---------CT--ACAGTTGT--GTCATCTACACAA----TCCCTGCAGAAAACTCATTGAACACGTAGTCGA----CACATTT-AAAAATGCTGTGCTG---TGGAAGTGCAAGTTGCACAAACATTTTCATCTTTAGCTT s panTro4.chr1 225036144 917 + 228333871 CCTGAGcagtgggtct-ca---agtgt----------ggtccccagacca--gcatgatccc-------------cat-cagctg---------------gaaact--gttag-----aaatgcaaattgtcaggccctaccccagacccactgaatcagaaactctgggagg--ggaaaccaac--------------------------------aatttgtgtttcaaca------TGAAGTC-TGAGAACTT-AAACTATGCACCGTTCTTG-GTAAGAAAATAAGAGTTTTCCTT-TGTGTGCGTATGTGAAACCAATTCCCTGCAACCCACA----------GTCGTTTAAACAAAAA---CGTGTCTAGGGAGTTCAAATTAGGTGGCCAATTGCCTTATAAAAGTTTACAAAGTAAAGAGTCTGTGCTGTTTCCGTTAGGAGACAGAAACCCAATCACTAACTTGGAGTATGAGTCAGAGGCGGGACAGAGAAATGTCTGTCTAGTCGGTGAGCTAATTAATACGTGATCCTGAGGATGGAGGAGCCAGGGCTGCCGTTCCTTCTCCACTAGGGAAAAAATAAAAAGATGTTTCTCTGTCAGGCAGCTCCCTAGCTACCTCCAGTATGTTCTA-TTCCATGGCTAGAGGAGTGCAGCCTACATCCTGTGGATTTATGTATATTACTGTAAAACAA-GCTTTCTCTTCTCGAGAGTTCCGAAGCAGATCTGTCTC-TGATTCTTTCCATGAATTCAAA-TACATTGTCATCCTTAGGTTTCCTAGGTAAAGG---AGACTGCATTACTCATCAGCA-TTTAATAAATATTCATTTGTTGGTTGACTGATTCATTATCCTTCATGCCA-ATCACATGGCTGCTACTAGC-----------ATGCATACAGCCGACTCTTAA---------CTACACAGTTGT--GTCATCTACACAA----TCCCTGCAGAAAACTCATTGAACACGTAGTCGA----CACATTT-AAAAATGCTGTGCTG---TGGAAGTGCAAGTTGCACAAACATTTTCATCTTTAGCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226405071 920 - 229942017 CCTGAGcagtgggtct-ca---agtgt----------ggtccccagacca--gcatgatccc-------------cat-cagctg---------------gaaact--gttag-----aaatgcaaatcgtcaggccctaccccagacccactgaatcagaaactctgggagg--ggaaaccaac--------------------------------aatctgtgttttgacaTTAAG-TTAAGTC-TGAGAACTT-AAACTATGCACCATTCTTG-GTAAGAAAATAAGAGTTTTCCTT-TGTGTGCCTATGTGAAACCAATTCCCTGCAACCCACA----------GTTATTTAAACAAAAA---TGTGTCTAGGGAGTTCAAATTAGGTGGCCAATTGCCTTGTAAAAGTTTACAAAGTAAAGAGTCTGTGCTGTTTCCGTTATGAGACAGAAACCCAATCACTAACTTGGAGTATGAGTCAGAGGCAGGACAGAGAAATGTCTGTCTAGTCGGTGAGCTAATTAATACATGATCCTGAGGATGGAGGAGCCAGGGCTGCCGTTCCTTCTCCACTAGGGGAAAA--AAAAAGATGTTTCTCTGTCAGGCAGCTCCCTAGCTACCTCCAGTATGTTCTA-TTCCATGGCTAGAGGAGTGCAGCCTACATCCTGTGGGTTTATGTATACTACTGTAAAACAA-GCTTTCTCTTCTCAAGAGTTCTGAAGCAGATCTGTCTC-TGATTCTTTCCATGAATTCAAA-TACATTGTCATCCTTAGGTTTCCTAGGTAAAGG---AGACTGCATTACTCATCAGCA-TTGAATAAATATTCATTTGTTGGTTGACTGATTCATTATCCTTCATGCCA-GTCACATGGCTGCTACTAGC-----------ATGCGTACAGCCGACTCTTAA---------CTACACGGTTGT--GTCATCTACACAA----TCCCTGCAGAAAACTCATTGAACACGTAGTCCA----CGCATTT-AAAAATGCTGTGCTA---TGGAAGTGCAAGTTGCACAAACATTTTCATCTTTAACTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140288486 921 - 143122389 CCTGGGcagtgggcct-ca---aatgt----------ggtccccagacca--gcgtgatccc-------------cat-cagctg---------------gaaacg--gttag-----aaatgcaaattgtcaggccctaccccagacccactgaatccgaaactctgggagg--ggaaaccaac--------------------------------aatctgtgtttcaacaTTAAG-TTAAGTC-TGAGAACTT-AAACTATGCACCGTTCCTG-GTAAGAAAATA--AGTTTTCCTT-TGTGTGCGTATGTGAAACCAATTCCCTGCAACCCACA----------GTTATTTAAACAAAAA---CGTGTCTAGGGAGTTCAAATTAGGTGGCCAATTGCCTTATAAAAGTTTACAAAGTAAAGAGTCTGTGCTGTTTCCGTTTTGAGACAGACACCCAATCACTAATTTGGAGTATGAGTCAGAGGCAGGACAGAGAAATGTCTGTCTAGTCGGTGAGCTAATTAATACGTGATCCAGAGGATGGAGGAGCCAGGGCTGCCGTTCCTTCTCCACTAGGGAAAAA--AAAAAGATGCTTCTCGGTCAGGCAGCTCCCTAGCTACCTCCAGTATGTTCTA-TTCCATGGCTAGAGGAGTGCAGCCTACATCCTGTGGATTTATGTATACCACTGTAAAACAA-GCTTTCTCTTCTCGAGAGTTCCGAAGCAGATCTGCCTC-TGATTCTTTCCATGAATTCAAA-TACATTGTCATCCTTAGGTTTCCTAGGTAAAGGAAAAGACTGCCTTACTCATCAGCA-TTTAATAAATATTCATTTGTTGGTTGACTGATTCATTATCCTTCCTGCCA-ATCACATGGCTGCTACTAGC-----------AAGCACACAGCTGACTCTTAA---------CTACACGGTTGT--ACCATCTACACAA----TCCCTGCAGAAAACTCATTGAACCCGCAGTCGA----CACATTT-AAAAATGCTGTGCTG---TGGAAGTGCAAGTTGCACAAACACTTTCATCTTTAACTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16996853 908 - 229590362 CCTGAGcagtgggtct-ca---ggtgt----------gggccccagacca--gcatgatccc-------------cat-cggctg---------------gaaact--gttag-----aaatgcaaattgtgaggccctatcccagacccactgaatcagacacactggcggg--ggagcccagc--------------------------------actctgtgtttccacattcag-ttaagtc-tgaGAGCTT-GAACTATGCACCGTTCTTG-GTAAGAAAACAAGAGTTTTGCTT-TATGTGCGTATGTGAAACCAATTCCCTGCAAGCCACA----------GTTATTTAAACAAAAA---CCTGTCCAGGGAGTTCAAATTAGGTGGCCAATTGCCTTATAAAAGTTTACAAAGTAAAGAGTCTGTGCTGTTTCCCTTATGAGCCAGAAACCCAATCACTGACTTGGAGTGTGAGTCAGCGGCCGGACAGAGAAATGTCTGTCTAGTCGGTAAGCTAATTA-------ATCCTGAGGATGGAGGAGCCAGGGCTGCCGTTCTTACTCCACTAGGGG-AAA--AAAAAGATGTTTCTCTGTCAGGCAGCTCCCTAGCTACCTCCAGTATGTTCTG-TTCCATGGCTAGAGGAGTGCGGCCTACATCCTGTGGATTTATGTATACTACTGTAAAACAA-GCTTTCTCTTCTCGAGAGTTCCGAAACAGATCTGTCTC-TGATTCTTTCCATGAATTCAAA-TACATTGTCATCCTTAGGTTTCCTAGGTAAAGG---AGAGTGCATTACTCATCAGCA-TTTAATAAATATTCATTTGTTGGTTGACTGATTCATTATCCTTCATGTCA-ATCACATGGCTGCTACTAGC-----------ATGCATACAG----CTCTTAA---------CTACACAGTTGT--GTCATCTACACAA----TCCCTGCAGAAAACTCATTGAACACATAGTCAA----CACATTT-AAAAATGCTGTGCTG---TGGAAGCTCAAGTTGCACAAACATTTTCATCTTTAACTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223760305 909 - 227556264 CCTGAGcagtgggtct-ca---ggtgt----------gggccccagacca--gcatgatccc-------------cat-cggctg---------------gaaact--gttag-----aaatgcaaattgtgaggccctatcccagacccactgaatcagacacactggcggg--ggagcccagc--------------------------------actctgtgtttccacattcag-ttaagtc-tgaGAGCTT-GAACTATGCACCGTTCTTG-GTAAGAAAATAAGAGTTTTGCTT-TGTGTGCGTATGTGAAACCAATTCCCTGCAAGCCACA----------GTTATTTAAACAAAAA---CCTGTCCAGGGAGTTCAAATTAGGTGGCCAATTGCCTTATAAAAGTTTACAAAGTAAAGAGTCTGTGCTGTTTCCCTTATGAGCCAGAAACCCAATCACTGACTTAGAGTGTGAGTCAGAGGCTGGACAGAGAAATGTCTGTCTAGTCGGTGAGCTAATTA-------ATCCTGAGGATGGAGGAGCCAGGGCTGCCGTTCTTACTCCACTAGGGGAAAA--AAAAAGATGTTTCTCTGTCAGGCAGCTCCCTAGCTACCTCCAGTATGTTCTG-TTCCATGGCTAGAGGAGTGCGGCCTACATCCTGTGGATTTATGTATACTACTGTAAAACAA-GCTTTCTCTTCTCGAGAGTTCCGAAACAGATCTGTCTC-TGATTCTTTCCATGAATTCAAA-TACATTGTCATCCTTAGGTTTCCTAGGTAAAGG---AGAGTGCATTACTCATCAGCA-TTTAATAAATATTCATTTGTTGGTTGACTGATTCATTATCCTTCATGTCA-ATCACATGGCTGCTACTAGC-----------ATGCATACAG----CTCTTAA---------CTACACAGTTGT--GTCATCTACACAA----TCCCTGCAGAAAACTCATTGAACACATAGTCAA----CACATTT-TAAAATGCTGCACTG---TGGAAGCTCAAGTTGCACAAACATTTTCATCTTTAACTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16810542 909 - 220367699 CCTGCACAGTGGGTCT-CA---GGTGT----------GGGCCCCAGACCA--GCATGATCCC-------------CAT-CGGCTG---------------GAAact--gtcag-----aaatgcaaattgtgAGGCCCTatcccagacccactgaatcagacaCAGTGGCGGG--GGAGCCCAGC--------------------------------ACTCTGTGTTTCCACATTCAG-TTAAGTC-TGAGAGCTT-GAACTATGCACCATTCTTG-GTAAGAAAATAAGAGTTTTGCTT-TGTGTGCGTATGTGAAACCAATTCCCTGCAAGCCACA----------GTTATTTAAACAAAAA---CCTGTCCAGGGAGTTCAAATTAGGTGGCCAATTGCCTTATAAAAGTTTACAAAGTAAAGAGTCTGTGCTGTTTCCCTTATGAGCCAGAAACCCAATCACTGACTTGGAGTGTGAGTCAGAGGCCGGACAGAGAAATGTCTGTCTAGTCGGTAAGCTAATTA-------ATCCTGAGGATGGAGGAGCCAGGGCTGCCGTTCCTACTccactaggggaaaa--aaaaagatgtttctctGTCAGGCAGCTCCCTAGCTACCTCCAGTATGTTCTG-TTCCATGGCTAGAGGAGTGCGGCCTACATCCTGTGGATTTATGTATACTACTGTAAAACAA-GCTTTCTCTTCTCGAGAGTTCCGAAACAGATCTGTCTC-TGATTCTTTCCATGAATTCAAA-TACATTGTCATCCTTAGGTTTCCTAGGTAAAGG---AGAGTGCATTACTCAtcagca-tttaataaatattcatttgttgGTTGACTGATTCGTTATCCTTCATGTCA-ATCACATGGCTGCTACTAGC-----------ATGCATACAG----CTCTTAA---------CTACACAGTTGT--GTCATCTACACAA----TCCCTGCAGAAAACTCATTGAACACAGAgtcaa----cacattt-aaaaatgctgCGCTG---TGGAAGCTCAAGTTGCACAAACATTTTCATCTTtaactt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82608717 913 + 85787240 CCTGAGcagtgggtct-ca---ggtgt----------gggccccaaacca--gcatgatccc-------------cat-cggctg---------------gaaact--gttag-----aaatgcaaattgtgaggcccaatcccagacccactgaatcagacactctggcggg--ggagcccagc--------------------------------actctgtgtttccacattcag-ttaagtc-tgaGAGCTT-GAACTATGCACCGTTCTTG-GTAAGAAAATAAGAGTTTTGCTT-TGTGTGCGTATGTGAAACCAGTTCCCTGCAAGCCACA----------GTTATTTAAACAAAAA---CCTGTCTAGGGAGTTCAAATTAGGTGGCCAATTGCCTTATAAAAGTTTACAAAGTAAAGAGTCTGTGCTGTTTCCCTTATGAGCCAGAAACCCAATCACTGACTTGGAGTGTGAGTCAGAGGCCGGACAGAGAAATGTCTGTCTAGTCGGTAAGCTAATTA-------ATCCTGAGGATGGAGGAGCCAGGGCTGCCGTTCCTACTCCACTAGGGGAAAA--AAAAAGATGTTTCTCTGTCAGGCAGCTCCCTAGCTGCCTCCAGTATGTTCTG-TTCCATGGCTAGAGGAGTGCGGCCTACATCCTGTGGATTTGTGTATACTACTGTAAAACAA-GCTTTCTCTTCTCGAGAGTTCCGAAACAGATCTGTCTC-TGATTCTTTCCATGAATTCAAA-TACATTGTCATCCTTAGGTTTCCTAGGTAAAGG---AGAGTGCATTACTCATCAGCA-TTTAATAAATATTCATTTGTTGGTTGACTGATTCATTATCCTTCATGTCG-ATCACATGGCTGCCACTAGC-----------ATGCATACAGCCGACTCTTAA---------CTACACAGTTGT--GTCATCTACACAA----TCCCTGCAGAAAACTCATTGAACACATAGTCGA----CACATTT-AAAAATGCTGTGCTG---TGGAAGCTCAAGTTGCACAAACATTTTCATCTTTAACTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14289195 940 - 49578535 CCTGGGcagtgggtctcca---agtgt----------ggtccccagacca--gcatgatccc-------------cat-cagctg---------------gaaact--gttag-----aaatgcacattgtcaggccctacccca-acccaccaaatcagaaactctgggagg--gga-cccaATGGGAGCTTTTACCGAAGTCAGAGGGTGAAGCAGAGCTGTGTTTCCACACGCAGTTTAAGTCTTAAGAACTTAAAACTATGCACCGTTCTTG-GTAAGAAAATAAGAGTTTTCCTT-TGTGTGCGTATGTGAAA-CAATTCCCTGCACCCCACA----------GTTATTTAAACAAAAA---TGTGTCTAGGGAGTTCAAATGAGCTGGCCAATTGCCTTATAAAAGTTTACAAAGT-AAGAGTCTGTGCTGTTTCCCTTATGAGGCAGAAGCCCAATCACTAACTTGGAG--TGAGTCCGAGGCAGGACAGAGGAGTGTCTGTCTAGTCCCCGAGCTCATCAATACGTGATCGTGAGGATGGAGGAGGCAGGGTTGTCGCTCCTGCTCTGCTAGGGGAAAA--AAAGAGATGCTGCT--GTCAGGCAGCTCCCTGGCTACCTCCCGTATATTCTG-TTCCATTGCTGGAAGAGTGCAGCCTACATCCTGTGCACTTATGTATACTACTGTAAAACAC-ACTCTCTCTTCTGGAGAGTTCTGAAGCAGATGTTTCTCTTGAGTCTTTCCATGAATTCAAA-TGCATTGTCATCCTTAGGTTTCCTAGGTAAAGG---AGAGTGCACTGCTTATCGGCA-TTTAATAACTGTTCCTTTGTTGGCTGACCGA----TGATCCTTCGTGTCA-GTCGCGTGGCTGCTAGGAGC-----------ACGCGTACGGCCGACTCCCAG---------CCACACAGTCGT--GTCATCCACACAA----TCCCTGAAGAAAACTCACTGAACATGCAGTCCA----CACATTTAAAAAACGCTGTGCTC---TGAAAGTGTATGTTGCACAAACATTTTC------AACTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178850438 814 + 195471971 CTCGGGcagtggttctcca---aacat----------gtctctatggcca---cacaattca-------------catgtgggtg---------------aaaaacaggctag-----aaacccctactgtcagactccacccaagactgactgaatcaaaagttgtgagagg--gga-cccaga--------------------------------aatctgtctttcaac-------TCAGG---TAAAACCTT-AAA----GAGTTGTTCTTGAGTAAGAAAACTTAAATCTTCC-T-TGTGTGCATCTATGAAACCAGTTCCCTGAAACCTGTG----------CTTACTTAGGCAAAAAATGTCTCTGCAGGGAGTTCAGGTCCTGGGGCT-GTTGCCTTCCAAAAGTTGACAGAGTAAAGAATAGGTCTAATTACTCTTTTGTGATGCAAACCCAGT---GGATTTGGAGT------------CCAAATGGAGAGGCATCCTATTGGTC--------------------CCCCTCA--AAGGAGGAGCCAGTACCACTGCTCC--CTCCACTGGAG-------AAAAAGATGTT-------------GCTTGCTAGCTATTATCAATATATTCTGTTTCCGTGTCTAAG------------ACATCA---------ATATGTTGTCCTCCATGGCAA-GCTTTCTCTTCT---GCCTTCTGAAGCAGACCTATCTT-AGGTTCCTTCCTTGAATCTAAACTTTTTTGTCATGCTCAGTTCTCCTAGATAAAGG---AGAGTGGGTTACTAATCAGCA--TGAACAAATATTTCTCTGTCTGTCACCTGCTTTCTCATCCCCCACACCATGTCACATGAC-----CAGAC-----------ATGTATT-------TCCATAAGATGCAACTCTGCACCTGTGT--GTCAGCTCCCCAG----CCTTCAC--------------GCACTCAGTCAGAACTCACACTC---AGATCCCATGCTT---TAAAAGTACAACCTGC----GCACCTTCCCCCTTACCTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36431449 984 + 80974532 actgagcagggagcct-gacacagagttcaatcccagggtcctgagatcatgacctgaccccaaggcagacacttcac-caactgccacccaggtgccccTAAATG--GTGATTCTTCAAGTG-GGattctcaggccccaatctggacatactaagtgaggaactctgggagggaggaccctcac--------------------------------aatctgtgtctAAGCCAGTAGTTTAAGTT-TGAGTGGTT---------TGCTGCTCTTGAGCAAAACAACGTGAGCTTCCCTTCCCCGTGTTGATGTGAAATCAGTTCCTAGGAGCCTGTACTTACCTGTTGTTACTGCAATAAAAA---TGTGCCTGGAGAGACCATATTCAGTGCCCAGTTGCCTCATAAAAGTTTACAAAGTAAAGAATCTGTGCTGTATCAATTGTGTGTTAGAACCCTAGTCACTAACTGGGAGTATGAACCAGGCACAAGAAAGACAAATGTCC----AGTGGGTGAGCT----GCCATGTGATCCTGAGGACAGCAGGACCAGGGCTGCTCTTTCTCCTCTAGTACAG--AGA--GAGGAGATGGTTCTTCCCCAGGCAG-GCCCGAGCTACCACTGACACAGTTTG-CTTTGTGGCTAGAACAGAGCAGTCTGCATCCTGTGGTTTTATGGACATTCCCGTAGAACAGCGTTCTCCCTTCCTGAGAGTTCTGGAACACATCTGTCTC-TGGCCTCCTCCTTGAATGCAAA-CGTTTTGGCATACTTTGCTTCCCTAGGT-AAGG---TGGGTGCCGTGCTCATTGGCATTTTAATAAATATTTATTTGTTGCTTGACTGATTCATTATTCTCCTTGTCAAGTTACAGGGCTGCTGCCAGCACCAAGTGCAGATGCATACGGCAAGCTTCTAA---------CTGTACAATTGTGGGTCCTCCACATGGACCTTCCCTGCCAGAGACTCACTGAACAAGTCATCAG----CACATTT--AGGATGTCGTGCTGTTATAAAAGTGCAAGTTGCAAGACCGCTTTCTCCCTTAATTC i canFam3.chr7 I 132 C 0 a score=8595.000000 s hg38.chr1_KI270759v1_alt 280278 2 + 425601 CA s panTro4.chr1 225037061 2 + 228333871 CA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226405991 2 - 229942017 CA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140289407 2 - 143122389 CA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16997761 2 - 229590362 CA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223761214 2 - 227556264 CA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16811451 2 - 220367699 ca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82609630 2 + 85787240 CA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14290135 2 - 49578535 CA i calJac3.chr19 C 0 C 0 s mm10.chr1 178851252 2 + 195471971 CA i mm10.chr1 C 0 I 124 e canFam3.chr7 36432433 0 + 80974532 C a score=902900.000000 s hg38.chr1_KI270759v1_alt 280280 354 + 425601 CTTAGAATACAtttttttagttttttaatgtttttagagacagggtctgcctctgtgacccaggctggaatgcagtgctgtgtgatcatagctcactataacctcaaacttctaggttcaagtgctcctcctgcctcagcctcccaagtagctggcactataggcacacaccaccatgaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttttaatagagacggggtcttgctatgttgctgatttcaaactcctggcctaaagcaattatcctaccctggcctcccaaagtgctgggattgcaggcatgagccacctggcccATCTATAACTAactt s panTro4.chr1 225037063 340 + 228333871 TTTAGAATAAAtttttttagttttttaatgtttttagagacagggtctgcctctgtgacccaggctggaatgcagtgctgtgtgatcatagctcactataacctcaaacttctaggttcaagtgctcctcctgccttagcctcccaagtagctggcactataggcacacaccaccatgacca----------gcgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttttaatagagacggggtcttgctatgttgctgatttcaaactcctggcctaaagcaattatcctaccctggcctcccaaagtgctaggattacaggcatgagccacctggcccATCt----ttaactt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226405993 332 - 229942017 TTTAAAATAAttttttttagttttttaatttttttagagacagggtctgcctctgtcacccaggctggaatgcagtggtgtgtgatcatagctcactataacctcaaacttctaggttcaagtgctcctcctgcctcagcctcccaagtagctggcactataggcacacaccaccatgacca------------------gcatgtgtgtgtgtgtgtgtgtttgttttaatagagaggaggtcttgctatgttgctgatttcaaactcctggcctaaagcagtcatcttagcctggcctcccagagtgccaggattacaggcgtgagccacctggcccATCT----TTAACTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140289409 338 - 143122389 TTTAAAATACAtttttttagttttttaatttttttagagacagggtctgcctctgtcacccaggcgggaatgcagtggtgtgtcatcatagctcactataacctcaaacttctaggttcaagtgcgcctcctgcctcagcctcccaagtagctggcactgtaggcacacaccaccatgacca------------gcgtgtgtgtgtgtgtgtgtgtgtgtgtttgttttaatagagatggggtcttgctatgttgctgatttcaaactcctggcctaaagcactcatcctaccctggcctcccaaagtgctaggattacaggcacgagccacctggcccATCT----TTAACTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16997763 336 - 229590362 TTTAAAATAAATttttttagttttttaatttttttagagacagggtctggctctgtctc----actggagtgcagtggtgtgtgatcatagctcactataacctcaaacatctagcttgaggtgctcctcctgcctcagcctcccaagtagctggcactataggcacacagcaccatgacc----------tgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttaaatagagctggggtcttgctatgttgctgatttcaaactcctggcctacagcaatcatcctaccctggcctcccaaagtgctaggattacaggcatgagccacctggcccATCT----TTCACTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223761216 342 - 227556264 TTTAAAATAAATttttttagttttttaatttttttagagacagggtctggctctgtcac----actggagtgcagtggtgtgtgatcatagctcactataacctcaaacttctaggttgaggtgctcctcctgcctcagcctcccaagtagctggcactataggcacacagcaccatgacct----ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttaaatagagctggggtcttgctatgttgctgatttcaaactcctggcctacagcaatcatcctaccctggcctcccaaagtgctaggattacaggcatgagccacctggcccATCT----TTCACTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16811453 334 - 220367699 tttaaaataaatttttttagttttttaatttttttagagacagggtctggctctgtcac----actagagtgcagtggtgtgtgatcatagctcactataacctcaaacttctAGGTTGaggtgctcctcctgcctcagcctcccaagtagctggcactataggcacacagcaccatgacc------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaatagagctggggtcttgctatgttgctgatttcaaactcctggcctacaGCAATCatcctaccctggcctcccaaagtgctaggattacaggcatgagccacctggcccaTCT----TTCACTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82609632 338 + 85787240 TTTAAAATAAAtttttttagtttttaaatttttttagagacagggtctggctctgtcac----actggagtgcagtggtgtgtgatcatagcgcactataacctcaaacttctaggttggggtgctcctcctgcctcagcctcccaagtagctggcactataggcacacagcaccatgacc--------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaatagagctggcgtcttgctatgttgctgatttcaaactcctggcctacagcaatcatcctgccctggcctcccaaagtgtgaggattacaggcatgagccacctggcccATCT----TTCACTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14290137 304 - 49578535 TTTAAAATAAAtttttttaattttttactg-ttttggagaccgctccag--------------gctgcagtgcagtggtgt---------gatgactgtaacctcagactcccaggttcaagtgctcctcctgcctcagcctcccaagcagctgggactgcaggc-cgcaccaccgtaacca--------------------gctagtgtgtatgcgtgtgtgtgttttaacagagacggggtcttgctgtgtttctgattt-aaactcctggcctgaagcaatcgtccttccttggcctcccaaagtgctgggattacaggcatgagccaccTGCTCCACCT----GTAACTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178851254 124 + 195471971 I e canFam3.chr7 36432433 0 + 80974532 C a score=825881.000000 s hg38.chr1_KI270759v1_alt 280634 259 + 425601 cataacactccaaattggaagaaagttggtggtgttattagcattattttacagatggagaaattaacacctggagTTTTGTGATTACAGAGCAGTGGTAATCACCCAGTTATTTTCCTTCTCTGTCCCTCCAGTGGCCCTCTGTTGTCTGGGTTAAGTACAGACTTTTTAGTTTGAGGAAAGGAGTCCCTCCAC-------------AATTTGTCATTCCTCT-ATTCTTCCAGCCAAATTTCTTACTTCTCC---------TCCACCCT---------CAACTACAGTC s panTro4.chr1 225037403 259 + 228333871 cataacactccaaattggaagaaagttggtggtgttattagcattattttacagatggagaaattaacacctggagTTTTGTGATTACAGAGCAGTGGTAATCACCCAGTTATTTTCCTTCTCTGTCCCTCCAGTGGCCCTCTGTTGTCTGGGTTAAGTACAGACTTTTTAGTTTGAGGAAAGGAGTCCCTCCAC-------------AATTTGTCATTCCTCT-ATTCTTCCAGCCAAATTTCTTACTTCTCC---------TCCACCCT---------AAACTACAGTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226406325 259 - 229942017 CATCACACTCCAAACTGGAAGAAAGTTGGTGGTGTTATTAGCATTGTTTCACAGATGGAGAAATTAACACCTGGAGTTTTGTGATTACAGAGCAGTGGTAATCACCCAGTTATTTTCCTTCTCTGTGCCTCCAGTGGCCCTCTGTTGTCTGGGTTAAGTACAGACTTTTTAGTTTGAGGAAAGGAGTCCCTCCAC-------------AATTCGCCATTCCTCT-ATTCTTCCAGCCAAATTTCTTACTTCTCC---------CCCACCCT---------AAACTACAGTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140289747 258 - 143122389 CATAACACTCCAAATTGGAAGAAAGTTGGCGGTGTTATTAGCATTATTTTACAGATGGAGAAATTCACACCTGGAGTTTTGGGATTACAGAGCAGTGGTAATCACCCAGTTATTTTCCTTCTCTGTCCCTCCAGCGGCCCTCTGTTGTCTGGGTTAAATACAGACTTTTTAGTTTG-GGAAAGGAGTCCCTCCAC-------------AATTTGTCATTCCTCT-ATTCTTCCAGCCAAATTTCTCACTTCTCC---------TCCACCCT---------AAACTACAGTC i nomLeu3.chr5 C 0 I 5 s rheMac3.chr1 16998099 253 - 229590362 CATAACACTCCAAATTGGAAGAAAGTTGGTGGTGGTATTAGCATTATTTTCCAGATGGAGAGATTAACACCTGGAGTTGTGTGATTACAGAGCAGTGGTAATCACCCAGTTATTTTCCTTCTCTGTCCCTCC-GTGGCCCTCTGTTGTCTGGGTTAAGTACAGACTTTTTAGTTTG-GAAAAGGAGTCCCTCCAC-------------AATTTGTCATTCCTCT-ATTCTTCCAGCCAAATTT----CTTCTCC---------TCTACCCT---------AAACTACAGTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223761558 257 - 227556264 CATAACACTCCAAATTGGAAGAAAGTTGGTGGTGTTATTAGCATTATTTTCCAGATGGAGAGATTAACACCTGGAGTTGTGTGATTACAGAGCAGTGGTAATCACCCAGTTATTTTCCTTCTCTGTCCCTCC-GTGGCCCTCTGTTGTCTGGGTTAAGTACAGACTTTTTAGTTTG-GAAAAGGAGTCCCTCCAC-------------AATTTGTCATTCCTCT-ATTCTTCCAGCCAAATTTCTTACTTCTCC---------TCTACCCT---------AAACTACAGTC i macFas5.chr1 C 0 I 5 s papAnu2.chr1 16811787 256 - 220367699 CATAACACTCCAAATTGGAAGAAAGTTGGTGGTGGTATTAGCATTATTTTCCAGATGG-GAGATGAACACCTGGAGTTGTGTGATTACAGAGCAGTGGTAATCACCCagttattttccttctctgtcccTCC-GTGGCCCTCTGTTGTCTGGGTTAAGTACAGACTTTTTAGTTTG-GAAAAGGAGTCCCTCCAC-------------AATTTGTCATTCCTCT-ATTCTTCCAGCCAAATTTCTTACTTCTCC---------TCTACCCT---------AAACTATAGTC i papAnu2.chr1 C 0 I 5 s chlSab2.chr25 82609970 257 + 85787240 CATAACACTCCAAACTGGAAGAAAGTTGGTGGTGGTATTAGCATTATTTTCCAGATGGAGAGATTAACACCTGGAGTTGTGTGATTACAGAGCAGTGGTAATCACCCAGTTATTTTCCTTCTCTGTCCCTCC-ATGGCCCTCTGTTGTCTGGGCTAAGTACAGACTTTGTAGTTTG-GAAAAGGAGTCCCTCCAC-------------AATTTGTCATTCCTCT-ACTCTTCCAGCCAAATTTCTTACTTCTCC---------TCTACCCT---------AAACTACAGTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14290441 278 - 49578535 CCTAACACTCACAACTGGAAGAAAGTTGGTGGTGGTGGTAGCATGATTTTACAGATGGAGAAATTAACACCTGGAGTTGCGTTCGTGCAGAGCAGTGGTGATCACCCGGTCATTTTCCTTCTCTCTCTCTG--GCGGCCCTCTGTTGTGTGGGTTAAGTAGCGACTTTTTAGTTTG-GAAAAGGAGTCCCTTTCCAAATAGGTGAACGAATTTGTCATTCACCT-ATTCTTCCAGTCACATTTCTTACCTCTCC---------TCCACCCTGCCCACCCCAAACTACAGTC i calJac3.chr19 C 0 I 3 s canFam3.chr7 36432433 237 + 80974532 CGTAGCAGCCCAAACTGGAAGACTGCTGGTGGTG-------------TTTTCAGATGGGGAAATCTTCAC---------------TGCAGAGCAGTGGGGAACTCCTGGCTAGTCTCACTCTCCATCCTTCA-GTGGCTCCCTATTGTCCAGGTTAAGGATAG--TTTTTAGTTTG-GAAAAGAAGTCTGTCTGC-------------AATCTGATATCCACCTGATTTTTCCAGCCCCATTTCTTGCCCCTTTGCCACTGTGCCCACCCT---------AGACTACAGTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178851254 124 + 195471971 I a score=910.000000 s hg38.chr1_KI270759v1_alt 280893 1 + 425601 A s panTro4.chr1 225037662 1 + 228333871 A i panTro4.chr1 C 0 I 4 s ponAbe2.chr1 226406584 1 - 229942017 A i ponAbe2.chr1 C 0 I 4 s rheMac3.chr1 16998352 1 - 229590362 A i rheMac3.chr1 C 0 I 4 s chlSab2.chr25 82610227 1 + 85787240 A i chlSab2.chr25 C 0 I 4 e mm10.chr1 178851254 124 + 195471971 I e canFam3.chr7 36432670 0 + 80974532 C e calJac3.chr19 14290719 3 - 49578535 I e papAnu2.chr1 16812043 5 - 220367699 I e macFas5.chr1 223761815 5 - 227556264 I e nomLeu3.chr5 140290005 5 - 143122389 I a score=0.000000 s hg38.chr1_KI270759v1_alt 280894 310 + 425601 AACATCAAACAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcatgaggtcaggagatcgagaccatcctggctaacaaggtgaaaccccgtctctactaaaaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggtgacagagcgagactccgtctcaaaaaaaa e mm10.chr1 178851254 124 + 195471971 I e canFam3.chr7 36432670 0 + 80974532 C e calJac3.chr19 14290719 3 - 49578535 I e rheMac3.chr1 16998353 4 - 229590362 I e chlSab2.chr25 82610228 4 + 85787240 I e papAnu2.chr1 16812043 5 - 220367699 I e macFas5.chr1 223761815 5 - 227556264 I e nomLeu3.chr5 140290005 5 - 143122389 I e ponAbe2.chr1 226406585 4 - 229942017 I e panTro4.chr1 225037663 4 + 228333871 I a score=211.000000 s hg38.chr1_KI270759v1_alt 281204 5 + 425601 aaaaa s canFam3.chr7 36432670 5 + 80974532 AGAGA i canFam3.chr7 C 0 C 0 e mm10.chr1 178851254 124 + 195471971 I e calJac3.chr19 14290719 3 - 49578535 I e rheMac3.chr1 16998353 4 - 229590362 I e chlSab2.chr25 82610228 4 + 85787240 I e papAnu2.chr1 16812043 5 - 220367699 I e macFas5.chr1 223761815 5 - 227556264 I e nomLeu3.chr5 140290005 5 - 143122389 I e ponAbe2.chr1 226406585 4 - 229942017 I e panTro4.chr1 225037663 4 + 228333871 I a score=2537591.000000 s hg38.chr1_KI270759v1_alt 281209 828 + 425601 aaaaCATC---AAACAATactcactgagcccttcccacgtgccgggctatttgccgagaacttctcatgcattatctcatttaatcctcatcacaacttctctcaggtggaggcatgattgccatc-ccatcatacgggtgaggaaactgaggctcatagaagt------accttgcccc-aagccccatggctacttgcaggttccaagacaccggtcagcctg---------c---ccccctgcaccttggccatgctgcccactcacctagagcgcacagctgacactgagtcctcttctgaacctcatccatgaacatatttatgaaatctttcctgg--------ccccaagtggaaatgc-cccct----catttgggtcctcactgaaccccagtacacaactcttttgtactactctattatgctggggtgtttttttattgtctcacctgataaaccgtaagccccttgaagacagcaactcgtttttaagctctttataaccc-cagagcctcgcacagtacctggaccag---------attaagggg----tacttaacagatgcttagtgaaggaaggaatGGA------------------TTTCTCACCTGGTTGCTTATCTTCTAGACTCATTTGGGGAGTGGCCAGGAGTCCGGGAGAGCTGCCGGCCATTGTTCCGTCCCGTCTGTATCCCTTGGGCTAGTTTCTTCTAGACTGAGGTTTCTAAGTCCAAACAAGA------TGAACTGTGCACAGTGCCTCAATTAGGGAACAGCAGCTTGAGTGCTTTGGAAATACAAAAGT--GTAGTTTGTAGGTTCACCTTGAAGGCAAGATCAGACAGCTCTACGTAAGCCAGAGCTCTGAAACAAAGCTTCAGGCTGGG s panTro4.chr1 225037667 828 + 228333871 AAAACATC---AAACAATactcactgagcccttcccacgtgccgggctatttgccaagaacttctcatgcattatctcattgaatcctcatcacaacttctctcaggtggaggcattattgccatc-ccatcatccgggtgaggaaactgaggctcatagaagt------accttgcccc-aagccccatggctacttgcaggttccaagacaccggtcagcctg---------c---ccccctgcaccttggccatgctgcccactcacctagagcgcacagctgacactgagtcctcttctgaacctcatccatgaacatatttatgaaatctttcctgg--------ccccaagtggaaatgc-cccct----catttgggtcctcactgaaccccagtacacaactcttttgtactactctattatgctggggtgtttttttattgcctcacctgataaaccgtaagccccttgaagacagcaactggtttttaagctctttataaccc-cagagccttgcacggtacctggaccag---------actaagggg----tacttaacagatgcttaatgaaggaaggaatGGA------------------TTTCTCACCTGGTTGCTTATCTTCTAGACTCATTTGGGGAGTGGCCAGGAGTCGGGGAGAGCTGCCGGCCAGTGTTCCGTCCCGTCTGTATCCCTTGGGCTAGTTTCTTCTAGACTGAGGTTTCTAAGTCCGAACAAGA------TGAACTGTGCACAGTGCCTCAATTAGGGAACAGCAGCTTGAGTGCTTTGGAAATACAAAAGT--GTAGTTTGTAGGTTCACCTTGAAGGCAAGATCAGACAGCTCTATGTAAGCCAGAGCTCTGAAACAAAGCTTCAGGCTGGG i panTro4.chr1 I 4 C 0 s ponAbe2.chr1 226406589 824 - 229942017 AAAACATC---aaacaatacttactgagcccttcccacgtgccgggctatttgccgagaacttctcatgcattatctcatttaatcctcatcacaacttctctcaggtgggggcattgttgccatc-ccatcatacagatgaggaaactgaggctcacagaagt---------ttgtccc-aagccccatggctacttgcaggttccaagacaccagtcagcctg-------------ccccctgcaccttgtccacgctgcccactcacctagagtgcccagctgacactgagtcctcttctgaacctcatccatgaacatatttatgaaatcttttctgg--------ccccaagtggaaatgc-cccct----catttgggtcctcactgaaccccagtacacaactcttttgtactactctattatgctggggtgtttttttattgtctcacctgataaactgtaagccccttgaagacagcaactgctttttaagctctttataaccc-tagagccttgcacggtacctggcccag---------attaagggg----tacttaacagatgcttaatgaaggaaggaatGGA------------------TTTCTGACCTGGTTGCTTATTTTCTAGACTCATTTGGGGAGTAGCCAGGAGTCCGGGAGAGCTGCCGGCCATTGTTCCGGCCCGTCTGTATCCCTTGGGCTAGTTTCTTTTAGACTGAGGTTTCTAAGTCCAAACAAGA------TGAACTATGCACAGTGCCTCAATTAGGGAACAGCAGCTTGAGTGCTTTGGAAATACAAAAGT--GTAATTTGTGGGTTCACCTTGAAGGCAAGATCAGACAGCCCTATGTAAGCCAGAGCTCTGAAACAAAGCTTCGGGCTGGG i ponAbe2.chr1 I 4 C 0 s nomLeu3.chr5 140290010 828 - 143122389 AAaacatt---aaacaataatcactgagcccttcccatgtgccgggctgtttgctgagaacttcccatgcgttatctcatttaatcctcatcacagcttctctcaggtggaggcattattgccatc-ccatcatacggatgaggaaactgaggctcatagaagt------accttgcccc-aagccccatggctacttgcaggttccgagacaccagtcagcctg---------c---ccccctgcaccttggccacgctgcccactcacctagagtgcccagctgacactgagtcctcttccaaatctcgtccatgaacatatttatgaaatctttcctgg--------ccccaagtggaaatgc-cccct----catttgggtcctcactgaaccccagtacacaattcttttgtactactctattataccggggtgttttattattgtctcacctgataaactgtaagcctcttgaagacagtaactggtttttaagctctttataaccc-cagagccttgcacggtgcctggcccag---------attaagggg----tacttaacagatgcttaatgaaggaaggaatGGA------------------TTTCTGACCTGGTTGCTTATCTTCTAGACTCATTTAGGGAGTGGCCCGGAGTCCGGGAGAGCTGCCGGCCGTTGTTCTGTCCCGTCTGTATCCCTTGGGCTAGTTTCTTCTAGACCGAGGTTTCTAAGTCCAAACAAGA------TGAACTATGCACAGTGCCTCAATTAGGGAACAGCAGCTCGAGTGCTTTGGAAATACAAAAGG--GTAGTTTGTGGGTTCACCTTGAAGGCAAGATCAGACAGCCCTATGTAAGCCAGAGCTCTGAAACAAAGCTTCAGGCTGGG i nomLeu3.chr5 I 5 C 0 s rheMac3.chr1 16998357 815 - 229590362 AAAACATC---AAACAGTCCtcactgagcccttcccatgtgccgggctctttg-------tttctcctgccttatctcatttactcctcatcacagcatctctcaggtggaggcattactgccatc-ccatcatacagataaggaaactgaggctcacagaagc------accttgcccc-aagccccatgtctacttgcaggttccaagacactagtcagcctg-------------ccccctacagctcggccacactgcccgctcacctggagtgcccagctgacattgtgtcctcttccgaatctcattcatgaacatatttatggaacctttcctgg--------ccccacgtggaaatgcttccct----catttgggtcctcactgaaccccagtacacaactcttttgtaccactctgttatactggg--gttttattattgtctcacctgataaactgtaagcccatcaaagacagcagctggcttttaagctctttataaccc-cagagccttgcacggtacctggcccag---------attaagggg----tccttaacagatgcttaatgaaggaaggaatGGA--------------------TCTGACCTGGTTGCTTATCTTCTAGACTCATTTGGGGAGTGACCAGGAGTCCGGGAGAGCTGCCGGCCATTGTTCTGTCCCATCTGTATCCCTTGGGCTGGTTTCTTCTAGACTGAGGTTTCTGAGTCCAAACAAGA------TGAAGTATGCACAGTGCCTCAGTTAAGGAACAGCAGCTTGAGTTCTTTGGAAATACAAGA----GTAGTGTATGGGCTCACCTTGAAGGCGAGACCAGACAGCCCTATGTAAGCTAGAGCTCTGAAACAAAGCTTCAGGCTGGG i rheMac3.chr1 I 4 C 0 s macFas5.chr1 223761820 815 - 227556264 AAAACATC---AAACAGTCCtcactgagcccttcccatgtgccgggctctttg-------tttctcctgccttatctcatttactccttatcacagcatctctcaggtggaggcattactgccatc-ccatcatacagatgaggaaactgaggctcacagaagc------accttgcccc-aagccccatgtctacttgcaggttccaagacactagtcagcctg-------------ccccctacagctcgGCCACACTGCCCGCTCACCTGGAGTGCCCAGCTGACATTGTGTCCTCTTCCGAATCTCATTCATGAACATAtttatggaacctttcctgg--------ccccacgtggaaatgcttccct----catttgggtcctcactgaaccccagtacacaactcttttgtaccactctgttatactggg--gttttattattgtctcacctgataaactgtaagcccatcaaagacagcagctggcttttaagctctttataaccc-cagagccttgcacggtacctggcccag---------attaagggg----tccttaacagatgcttaatgaaggaaggaatGGA--------------------TCTGACCTGGTTGCTTATCTTCTAGACTCATTTGGGGAGTGACCAGGAGTCCGGGAGAGCTGCCGGCCATTGTTCTGTCCCATCTGTATCCCTTGGGCTGGTTTCTTCTAGACTGAGGTTTCTGAGTCCAAACAAGA------TGAAGTATGCACAGTGCCTCAGTTAGGGAACAGCAGCTTGAGTTCTTTGGAAATACAAGA----GTAGTGTATGGGCTCACCTTGAAGGCGAGACCAGACAGCCCTATGTAAGCTAGAGCTCTGAAACAAAGCTTCAGGCTGGG i macFas5.chr1 I 5 C 0 s papAnu2.chr1 16812048 815 - 220367699 AAAACATC---AAACAGTCCTCACTGAGCCCTTCCCATGTGCCGGGCTCTTTG-------TTTCTCCTGCCttatctcatttactcctcatCACAGCATCTCTCAGGTGGAGGCATTACTGCCATC-CCatcatacagatgaggaaactgaggctcacagaagc------ACCTTGCCCC-AAGCCCCATGTCTACTTGCAGGTTCCACGACACCAGTCAGCCTG-------------CCCCCTACAGCTCGGCCACACTGCCCGCTCACCTGGAGTGCCCAGCTGACATTGTGTCCTCTTCCGAATCTTATTCATGAACATATTTATGGAACCTTTCCTGG--------CCCCACGTGGAAATGCTTCCCT----CATTTGGGTCCTCACTGAACCCCAGTACACAACTCTTTTGTACCACTCTGTTATACTGGG--GTTTTATTATTGTCTCACCTGATAAACTGTAAGCCCATCGAAGACAGCAGCTGGCTTTTAAGCTCTTTATAACCC-CAGAGCCTTGCACGGTACCTGGCCCAG---------ATTAAGGGG----TCCTTAACAGATGCTtaatgaaggaaggaatgga--------------------tCTGACCTGGTTGCTTATCTTCTAGACTCATTTGGGGAGTGACCAGGAGTCCGGGAGAGCTGCCGGCCATTGTTCTGTCCCATCTGTATCCCTTGGGCTGGTTTCTTCTAGACTGAGGTTTCTGAGTCCAAACAAGA------TGAAGTATGCACAGTGCCTCAGTTAGGGAACAGCAGCTTGAGTTCTTTGGAAATACAAGA----GTAGTGTATGGGCTCACCTTGAAGGCGAGATCAGACAGCCCTATGTAAGCCAGAGCTCTGAAACAAAGCTTCAGGCTGGG i papAnu2.chr1 I 5 C 0 s chlSab2.chr25 82610232 815 + 85787240 AAAACATC---AAACAGTCCtcactgaacccttcccatgtgccaggctctttg-------tttctcctgccttatctgatttactcctcatcacagcgtctctcaggtggaggcattactgccatc-ccatcatacagatgaggaaactgaggctcacggaagc------accttgcccc-aagccccatgtctaCTTGCAGGTTCCAAGACACCAGTCAGCCTG-------------CCCCATGCAGCTCGGCCACACTGCCTGCTCACCTGGAGTGCCCAGCTGACATTGTGTCCTCTTCTGAATCTTATTCATGAACATAtttatggaacctttcctgg--------ccccacgtggaaatgcttccct----catttgggtcctcactgaaccccagtacacaactcttttgtaccactctgttatactggg--gttttattattgtctcacctgataaactgtaagcccatggaagacagcagctggcttttaagctctttataaccc-cagagccttgcacggtacctggcccag---------attaagagg----tccttaacagatgcttaatgaaggaaggaatGGA--------------------TCTGACCTGGTTGCTTATCTTCTAGACTCATTTGGGGAGTGACCAGGAGTCTGGGAGAGCTGCCGGCCATTGTTCTGTCCCATCTGTATCCCTTGGGCTGGTTTCTTCTTGACTGAGGTTTCTGAGTCCAAACAAGA------TGAAGTATGCACAGTGCCTCAGTTAGGGAACAGCAGCTTGAGTTCTTTGGAAATACAAGA----GTAGTTTATGGGCTCACCTTGAAGGCGAGATCAGACAGCCCTATGTAAGCCAGAGCTCTGAAACAAAGCTTCAGGCTGGG i chlSab2.chr25 I 4 C 0 s calJac3.chr19 14290722 837 - 49578535 AAAACATA---aaccaacactcactaagcccttcccatgtgctgcgctctttgtcaagaacttcccatacattatctcatttaatcctcacaataacttttctcaggtggagccattactgccacctccatcatactgacgaggaaactgaggctcatagaagt------accatgctccaaaacctcacagctactcgcaggctccaacacagcagtcagcccagtcagcccac---ccctctgcaccttggccaggctgctcactcacctggagtccccagccggcactgagtcctcttctgaatctcattcatgaacatattcatgaaaactttcctgg--------ccccacgtggaaatgc-cccct----catttggatcctcattgaaccccagtacacagctcttttgtactgctctgttttaccggggtgttttattattgtctcacccaa-------taagcctcttgaagacagcaactcgtttgtaagctgtttacaaccc-cagagccttgcgtggtacctggccacgcacggtaccactaagggg----tacttaacagatgcttaatgaaggaaggaat-GA------------------TTTCTGATCTGGCTGCTTATCTTCTAGACTGATTTGGGG-GTGGCT-GGGGTACAGGATTGCTGCTGGCCATTGCTCTGTCCCA----TGTCCCTTGGGCTAGTTCCTTCTAGATTGAGGTTTTTAAGTCCCAACAAGAAAATCCTGAAATAAGCACAGCACCTCAATCAGGAAACAGCAGCTCGAGTTCTTGGGAAATACAAAGG---GTTGTTAGTGTGTTCCCCTCGAAGGC-ATCTCAGCCAGCCCTGTGCAAGCCAGAGCCCC-AAACAAAGCTTCAGGCTGGG i calJac3.chr19 I 3 C 0 s canFam3.chr7 36432675 839 + 80974532 AAATCGTTTTAAGAcaatgctcaccaaaccctcacagtgtgccaggctccttgccaagagcctcccgcacaccatcctgtgtcatcctcatccca-------taaggcatagatcctgttactgtctccatttaacagataaggaaactgaggcacagagaaaccaagaaacttgACTGA-AAGCCCTGGGACTACTCATCAGTCCCTTG-CATGAGtttgccca---------catgctccctccacctagg-------------ttccct---gtgccctgctgacaccagctcctcttccaagcctccctgatgattatctgcaggaaaccttgcctggcccctgctcccctagtggaaatgc-cccctgccccatttgggacctcatcataccttagtacagaactgttttgtactactctgtt----------gtcttttt-tcttctcacctggcacaccagaagtcccttgaagaca-cgactggttttggagttcttcataacccttggtgtcccagatggtacctggcccag---------gttaagaggtatttactcagcagatgctggaggaaggaaggaatGGATTGATGGCCTCCTCCTGCTTCCTGACCTAGATATTTATGCACTAGACTAATTTGGGG-GTGGCCAGGAGTCTGGGGTAGCTAATGACT-TTGCTCTGATTAGTCTGTGGCTTTTGGGCAAGTTTCTTCTAGTCTGAGGTCCTTCA-TCCAAACAAGA------GGAACCATACACTCTGATCTGATGAGGGGGCAACAGCTCAGGCTCTTTCTAAACACTACGATGGGCAGTTGGCAGGTTTCCCTGGAAAGTGAGATAAAACAGCTCTGCGTGAGCTGGGTCCCAGGAACAAAGCTCCGTGACGGG i canFam3.chr7 C 0 C 0 e mm10.chr1 178851254 124 + 195471971 I a score=6054925.000000 s hg38.chr1_KI270759v1_alt 282037 1846 + 425601 ACCACTTTGCAGTCTCAGTGCCTGGTAGTGGGGACTGT-TCTACAGAGCCGT--------------GATCAAACCTCCAACT---------GCATTCTGGTCTTGGAGGAAAGCTGATTCCGTATGAAGAGAAAAGGCCTGGTGAGAGTATTTGCAGGGCTGAAGAAAAGTTAACATCTATAGTTTGGCAAGCAGCAGCTGCAAAGCATCCGTCCCAGCACATGATAAATGCTTCTGACGTTTCCTTCAGACACAGTGTGCTAGGAAGGCTTTTAAGTTCTCAAAT---GCAGGAGTCTGCCTTATTGATCAGGTGCCTTTCATTAAAGGTTTCC-AAGCC-CCTCGGCTACAG--------AGGAAACG-------CTCCCCTCAGCCTCCTCCACAGCCCCAGCCTTTCATGCAGAGGGGATTATCATTGTTGGAATAC-GGCATATACTTTAATTTGGTGAGGCTTTT----TGTTTAATGCTTATGATATGCACACTGGAACAGACTGGGATTAGGTAATTTTCACATTGAGTTGGTACTTCCCTCCCTAA-----CCCCCATCTGATCTTCCAT-------ATACACATTTTAA-------------------GAAGAAAATAAAGAGAAGACACGTCCTCCTAATGATCCTCCGTATTAGAACTTACCATTCTGCTTTGAACTCCTGCTGCTTTGAGTCTCCCACTGCCAGCAAGCACTTCTCTGCC-AGGCGGAGGGGCGGTGAAGGGAATTAAAGGGGCAGTCAGTGGCTTGCCTCTGGCGGGAGGTGGC-GGAGCGTCTCATTAGCGTTTGCTCCTTTCCTCC-AGCTGGGCTTCACTGGGCCCCTCTTCTTATCAACCCGTCCTTCACTTCACCCAGGCTGTCC--------CCTGCACTCAGACCCCCTCCAGTCCTTCCAACAAGATGGCAGCAGGATGACTGGGACTCATTGGAGCTAAGCAGAG-AATTAAAGTTGCTTTTGTTCCAAACCTAAAACTTGAAAATGAAGGAACTCTTACGTGGAAATGCCACCATCTCCCTTTTGTTTTATGCGTAAACCCAACTG----------GTTCC--CCATCCTCTGGGTCTC-CTTCCTGCCCCTCGCTGGCTCAGGGCATTGTACATA-CTGTGTGTTCAACA---CATGCTGAGTGGAATTGAACAGATGCAGTCCTGGGAAA-GGGGG---CCTTTTGGAAGAACTGATGGGGAAAGAATTGGG-GTAACTGTGGGCAG-------TTACTGGACGTTCTTGCTC----TTACTTATTGGTTGAATGAGAATG-AAAGTATCTAAGATGTACCAA-GTCCCAGG-------------GAT-----AGTGG-------CATAAT-----TTCTCTGTTCCTCCTTCT-GACTCCCTCTTCTCCCCTCTTTTAGTGTGGGG-AAGTTACGAGAACGTAGCGTTTGGTGCAGTGATCCATTCAGTATACGTCGGGCTCTTAAGAAAGTTAAATTTACCTAACATCCTACATTTTAGATAAGACCGTTCCAGATTTCCACCTCTTGACCCAAAAGATCCCTTCGGTGGTTTTCCTTACTAGGGCAATTCCCTTAGTTTCTTGGATTCTTCCTTCCTCTCCTTCCTGGAACTAA-GCTGCAGAGTCCCAGGC---TGGAGAAATAGCCCAC--------------TGCCCAGGGGTAT-TTTAGAAAGGGCTTCCCACCTTCC--------------GCAGTGGGCCTGGAGAAGGACGCCTTC-TTT-TCACCACCAGGCTGTGATCTCGCAGGCTGGCAAGGCCTTTATGATGAACTGAATGCGGTCTGTATTTACGTGCCTGCCATCTGTCCCCAGGCGGCACTGAGAAG-GGGGCTGAT----------------GCTGTCACCCCTAGCTCCTTCTGCAGGTCTCCTCCGT--ACGTGCCACTGCCAGGAACAAAATTATCATCTCATGGGAGCTGCACACATTTAATGGAACTTGGGAGCCAG--CACAGACCGTTTTCCTCAAAGACAGTTTTAT s panTro4.chr1 225038495 1846 + 228333871 ACCACTTTGCAGTCTCAGTGCCTGGTGGTGGGGACTGT-TCTACAGAGCCAT--------------GATCAAACCTCCAACT---------GCATTCTGGTCTTGGAGGAAAGCTGATTCCATATGAAGAGAAAGGGCCTGGTGAGAGTATTTGCAGGGCTGAAGCAAAGTTAACATCTATAGTTTGGCAAGCAGCAGCTGCAAAGCATCCGTCCCAGCACATGATAAATGCTTCTGACATTTCCTTCAGACACAGTGTGCTAGGAAGGCTTTTAAGTTCTCAAAT---GCAGGAGTCTGCCTTATTGATCAGGTGCCTTTCATTAAAGGTTTCC-AAGCC-CCTCGGCTACAG--------AGGGAACG-------CTCCCCTCAGCCTCCTCCACAGCCCCAGCCTTTCATGCAGAGGGGATTATCATTGTTGGAATAC-GGCATATACTTTAATTTGGTGAGGCTTTT----TGTTTAATGCTTATGATATGCACACTGGAACAGACTGGGATTAGGTAATTTTCACATTGAGTTGGTACTTCCCTCCCTAA-----CCCCCATCTGATCTTCCAT-------ATACACATTTTAA-------------------GAAGAAAATAAAGAGAAGACACGTCCTCCTAATGATCCTCTGTATTAGAACTTATCATTCTGCTTTGAACTCCTGCTGCTTTGAGTCTCCCACTGCCAGCAAGCACTTCTCTGCC-AGGCGGAGGGGCGGTGAAGGGAATTAAAGGGGCAGTCAGTGGCTTGCCTCTGGCGGGAGGTGGC-GGAGCATCTCATTAGCGTTTGCTCCTTTCCTCC-AGCTGGGCTTCACTGGGCCCCTCTTCTTATCAACCCGTCCTTCACTTCACCCAGGCTGTCC--------CCTGCACTCAGACCCCCTCCAGTCCTTCCAACAAGATGGCAGCAGGATGACTGGGACTCATTGGAGCTAAGCAGAG-AATTAAAGTTGCTTTTGTTCCAAACCTAAAACTTGAAAATGAAGGAACTCTTACATGGAAATGCCACCATCTCCCTTTTGTTTTATGCATAAACCCAACTG----------GTTCC--CCATCCTCTGGGTCTC-CTTCCTGCCCCTCGCTGGCTCAGGGCATTGTACATA-CTGTGTGTTCAACA---CATGCTGAGTGGAATTGAACAGATGCAGTCCTGGGAAA-GGGGG---CCTTTTGGAAGAACTGATGGGGAAAGAATTGGG-GTAACTGTGGGCAG-------TTACTGGACGTTCTTGCTC----CTATTTATTGGTTGAATGAGAATG-AAAGTATCTAAGATGTACCAA-GTCCCAGG-------------GAT-----ACTGG-------CATAAT-----TTCTCTGTTCCTCCTTCT-GACTCCCTCTTCTCCCCTCTTTTAGTGTGGGG-AAGTTACGAGAACGTAGCGTTTGGTGCAGTGATCCATTCAGTATACGTCGGGCTCTTAAGAAAGTTAAATTTACCTAACATCCTACATTTTAGATAAGACCGTTCCAGATTTCCACCTCTTGACCCAAAAGATCCCTTCGGTGGTTTTCCTTACTAGGGCAATTCCCTTAGTTTCTTGGATTCTTCCTTCCTCTCCTTCCTGGAACTAAGGCTGCAGAGTCCCAGGC---TAGAGAAATAGCCCAC--------------TGCCCAGGGGTAT-TTTAGAAAGGGCTTCCCACCTTCC--------------GCAGTGGGCCTGGAGAAGGACG-CTTC-TTT-TCACCACCGGGCTGTGATCTCGCAGGCTGGCAAGGCCTTAATGATGAACTGAATGCGGTCTGTATTTACGTGCCTGCCATCTGTCCCCAGGCGGCACTGAGAAG-GGGGCTGAT----------------GCTGTCACCCCTAGCTCCTTCTGCAGGTCTCCTCCGT--ACGTGCCACTGCCAGGAACAAAATTATCATCTCATGGGAGCTGCACACATTTAATGGAACTTGGGAGCCAG--CACAGACCGTTTTCCTCAAAGACAGTTTTAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226407413 1827 - 229942017 ACCACTTTGCAGTCTCAGTGCCTGGTAGTGGGGACAGT-TCTACAGAGCTGT--------------GATCAAACCTCCAACT---------GCATTCTGGTCTTGGAGGAAAGCTGATTCCATATGAAGAGAAAGGGCCTGGTGAGGGTATTTGCAGGGCTGAAGCAAAGTTAACATCTATAGTTTGGCAAGCGGCAGCTGCAAAGCATCCGTCCCAGCACATGATAAATGCTTCTGACATTTCCTTCAGACACAGTGTGCTAGGAAGGCTTTTAAATTCTCAAAT---GCAGGAGTCTGCCTTATTGATCAGGTGCCTTTCATTAAAGGTTTCC-AAGCC-CCTCAGCTACAG--------AGGGAACA-------CTCCCCTCAGCCTCCTCCACAGCCCCAGCCTTTCATGCAGAGGGGATTATCATTGTTGGAATAC-GGCATATACTTTAATTTGGTGAGGCTTTT----TGTTTAATGCTTATGAAATGCACACTGGAACAGACTGGGATTAGGTAATTTTCACATTGAGTTGGTACTTCCCTCCCTAA-----CCCCCATCTGATCTTCCAT-------ATACACATTTTAA-------------------GAAGAAAATACAGAGAAAACACATTCTCCTAATGATCCTCCGTATTAGAACTTACCATTCTGCTTTGAACTCCTGCTGCTTTGAGTCTCCCACTGCCAGCAAGCACTTCTCTGCC-AGGCGGAGGGGCGGTGAAGGGAATTAAAGGGGCAGTCAGTGGCTTGCCTCTGGCGGGAGGTGGC-GGAGCGTCTCATTAGCGTTTGCTCCTTTCCTCC-AGCTGGGCTTCACTGGGCCCCTCTTCTTATCAACACGTCCTTCACTTCACCCAGGCTGTGC--------CCCGCACTCAGATCCCCTCCAGTCCTTCCAACAAGATGGCAGCAGGATGATTGCGACTCATTGGAGCTAAGCCGAG-AATTAACGTTGCTTTTGTTCCAAACCTAAAACTTGAAAATGAAGGAACTCTTACATGGAAATGCCACCATCTCCCTTTTGTTTTATGCATAAACCCAACTG----------GTTCC--CCATCCTCTGGGTCTC-CTTCCTG-------------------ATTGTATATA-CTGTGTGTTCAACA---CATGCTGAGTGGAATCGAACAGATGCAGTCCTGGGAAA-GGGGG---CCTTTTGGAAGAACTGATGGGGAAAGAACTGGG-GTAACTGTGGCCAG-------TTACTGGACGTTCCTGCTC----TTATCTATTGGTTGAATGAGAATG-AAAGTATCTAAGATGTACCAA-GGCCCAGG-------------GAT-----AGTGG-------CATCAT-----TTCTCTGTTCCTCCTTCT-GACTCCCTCCTCTCCCCTCTTTTAGTGTGGGG-AAGTTACGAGAATGTAGAGTTTGGTGCAGTGATCCATTGAGTATACGTCGGGCTCTTATGAAAGTTAAATTTACCTAACATCCTACATTTTAGATAAGACTGTTCCAGATTTCCACCTCTTGACCCAAAAGATCCCTTCGGTGGTTTTCTTTACTGGGGCAATTCCCTTAGTTTCTTGGATTGTTCCTTCCTCTCTTTCCTGGAACTAAGGCTGCAGAGTCCCAGGC---TGGAGAAATAGCCCAC--------------TGCCCATGGGTAT-TTTAGAAAGGGCTTCCCACCTCCC---------------CAGTGGGCCTGGAGAAGGACGCCTTC-TTT-TCACCACCGGGCTGTGATCTCGCAGGCTGGCAAGGCCTTAATGATGAACTGAATGCGGTCTGTATTTACGTGCCTGCCATCTGTCCCCAGGCGGCACTGAGAAG-CGGGCTGAC----------------GCTGTCACCCCTAGCTCCTTCTGCAGGTCTCCTCCGT--ACATGCCACTGCCAGGAACAAAATTATCATCTCATGGGAGCTGCACACATTTAATGGAACTTGGGAGCCAG--CACAGACCGTTTTCCTCAAAGACAGTTTTAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140290838 1834 - 143122389 GCCACTTTGCAGTCTCAGTGCCCGGTAGTGGGGACTGT-TCTGCAGAGCCGT--------------GATCAAACCTCCAACT---------GCATTCCGGTCTTGGAGGAAAGCAGATTCCATATGAGGAGAAAGGGCCTGGTGAGGGTATTTGCAGGGCTGAAGCAAAGTTAGCATCTATAGTTTGGCAAGCGGCAGCTGCAAACCATCCGTCCCAGCACATGATAAATGCTTCTGACATTTCCTTCAG--ACAGTGTGCTAGGAAGGCTTTTAAGTTCTCAAAT---GCAGGAGTCTGCCTTATTGATCAGGTGCCTTTCATTAAAGGTTTCC--AGCC-CCTCAGCTACAG--------AGGGAACG-------CTCCCCTCAGCCTCCTCCACAGCCCCAGCCTTTCAGGCAGAGGGGATTATCATTGTTGGAAGAT-GGCATATACTTTAATTTGATGAGGCTTTT----TGTTTAATGCTTGTGAAATGCACACTGGAACAGACCGGGATTAGGTAATTTAAACATTTACTTGATACTT-----CCTAA-----CCCCCATCTGATCTTCCAT-------ATACACATTTTAA-------------------GAAGAAAATAAAGAGAAAACACGTCCTCCTAATGATCCGCCGTATTAGAACTTACCATTCTGCTTTGAACTCCTGCTGCTTTGAGTCTCCCACTGCCAGCAAGCACTTCTCTGCC-AGGCAGAGGGGTGGTGAAGGGAATTAAAGGGGCAGTCAGTGGCTTGCCTCTGGCGGGAGGTGGC-GGAGCGTCTCATTAGCGTTTGCTCCTTTCCTCC-AGCTGGGCTTCACTGGGCCCCTCTTCTTATCAACCCATCCTTCACTTCACCCAGGCTGTCC--------CCCGCACTCAGATCCCCTCCAGTTCTTCCAGCAAG-TGGCAGCAGTATGATTGCGACTCACTGGAGCTAAGCCGAG-AATTAAAGTTGCTTTTGTTCCAAACCTAAAACTTGAAAATGAAGGAACTCTTACATGGAAATGCCACCATCTCCCTTTTGTTTTATGCATAAACCCAACTG----------GTTCC--CCATCCTCTGGGTCTC-CTTCCTGTCCCTCGCTGGCTCAGGGCATTGTACATA-CTGTGTGTTCAACA---CGTGCTGAATGGAATCGAACAGATGCAGTCCCAGGAAA-GGGGG---CCTTTTGGAAGAACTGATGGGGAAAGAATT-GG-GTCACTGTGGCCAG-------TTACTGGACGTTCTTGCTC----TTATTTATTGGTTGAATGAGAATG-AAAGTATCGAAGATGTACCAA-GGCCCAGG-------------GAT-----AGTGG-------CATAAT-----TTCTCTGTTCCTCCTTCT-GACTCCCTCTTCTCCCCTCTTTTAGTGTGGGG-AAGTTACGAGAACGTAGAGTTTGGGGCAGTGATCCATTGAGTATATGTTGGGCTCTAATGAAAGTTCAATTTACCTAACGTCCTACATTTGAGATAAGACTGTTCCAGATTTCCACCTCTTGACCCAAAAGATCCCTTCAGTGGTTTTCCTCACTAGGGCAATTCCCTTAGTTTCTTGGATTCTTCCTTCCTCTCCTTCCTGGAACTAAGGCTGCAGAGTCCCAGGC---TGGAGAAATAGCCCAC--------------TGCCCCTGGGTAT-TTTAGAAAGGGCTTCCCACCCTCC--------------CCAGTGGGCCTGGAGAAGGATGCTTTC-TTT-TCACCACCGGGCTGTGATCTCGCAGGCTGACAAGGCCTTAATGATGAACTGAATGTGGTCTGTATTTACGTGCCTGCCATCTGTCCCCAGGCGGCAGTGAGAAG--GGGCTGAT----------------GCTGTCACCCCTAGCTCCTTCTGCAGGTCTCCTCCGT--ACGTGCCACTGCCAGGAACAAAATTATCATCTCATGGGAGCTGCACACATTTAATGGAACTTGGGAGCCAG--CACAGACCGTTTTCCTCAAAG--AGTTTTAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 16999172 1830 - 229590362 GCCACCTTG------CAGTGCCCGGTAGTGGGGACTGT-TCCACAGAGCCGT--------------GATCAAACCTCCAACT---------TCATTCTGGTCTTGGAGGAAAGCTGATCCCATATGAAGAGAAAGGGGCTGGTGGGGGTATTTGCAGGGCTGAAGCAAAGTCAGCGTCTATAGTTTGGCAAGCGGCAGCTGCAAACCATCCATCCCAGCACATGATAAATGCTTCTGACATTTCCTTCAGACACAGCGTGCTAGGGA-GCCTTTAAGTTCTCAAATAAGGCAGGAATCTGCCTTATTGATCAGGTGCCTTTTATTAAAGGTTTCC-AAGCC-CCTCAGCTACAGAGGGAACAAGGGAACA-------CTCTGCTCAGCCTCCTCCACAGCCCCAGCCTTTCAGGCAGAGGGGATTATCGTTGTTGGAATAT-GGCATATACTTTAATTTGGTGGGGCTTTT------TTTAGTGCTTATGATATGCACACTGGAACAGACTGGGATTAGGTAATTTTCACATTTACTTGGTACTTCCCTCTCTAA-----CCGCCATCTGATCTTCCAT-------ATACACATTTTAA-------------------GAAGAAAATAAAGAGAAAACACATCCTCCTAATGATCCTCCATATTAGAACTTACCATTCTGCTTTGAACTCCTGCTGCTTTGAGTCTCCCCCTGCCAGCAAGCACTTCTCTGCCAAGGCGGAGGGGCGGTGAAGGGGATTAGA-GGGCAGTCAGTGGCTTGCCTCTGGCGGGAGGTGGT-GGAGCGTCTCATTAGCGTTTGCTCCTTTCCTCC-AGCTGGGCTTCACTGGGCCCCTCTTCTTACCAACCCACCCTTCACTTCTCCCAGGCTGTCC--------CCTGCACTCAGATTCCCTCCAATCCTTCCAACAAGATGGCAGCAGGATGATTGGGACTAATAGGAGCTAAGCCAAG-AATTAAAGTTGCTTTTGTTCCAAACCTAAAACTTGAAA------GAACTCTTACATGGAAATGCCACCATCTCCCTTTTGTTTTATGCATAAACCCAACTG----------GTTCC--CCATCCTCTGGGCCTC-CTTCCTGCCCCTCGCTGGCACAGGGCATTGCACATA-CTGTGTGTTCAGCA---CATGCTGAGTGGAATCGAACAGATGCGGTCCTTGGAAA-GGGAG----CTTTTAGAAGAACTGATGGGGAAAGAATTGGG-GTAACTGCGGCCAG-------TTACTGGACGTTCTTGCTC----TTATTTATTGGTTGAATGAGAATG-AAAATATCTAAGATGTACCAA-GGCCCAGG-------------GAT-----AGTGG-------CATTAT-----TTCTCTGTTCCTCCTCCT-TACTCCCTCTTCTTCCCTCTTTTAGTGTGGGG-GAGTTACAGGAACGTA-AGTTTGGTGCAGTGATCCATTGAGTATATGTCAGGCTCTTATGAAAGTTAAATTTACCTAACATCCTACATTTTAGATAAGACCGTTCCAGATTTCCACGTCTTGACCCAAAAGATCCCTTCAGTGGTTTTCCTTACTAGGGCAATTCCCTTAGTTTCTTATATTCTTCCTTCCTCTCCTTCCTGGGACTAAGGCTGCAGAGTCCCAGGC---TGGAGAAATGG-CCAC--------------TGCCCATGGGTAT-TCTAGAAAGGGCTTCCCAGCCTCC--------------GCAGTGGGCCTGGAGAAGGACGCCTTC-TTT-TCACCACCGGGCTGTGATCTC--------ACAAGGCCTTAATGATGAGCTGAATGCGGTCTGTACTTGCGTGCCTGCCATCTGTCCCGAGGCAGCACTGAGAAG-CGGACTAAT----------------GCTGTCACCCCTAGCCCCTTCTGCAGGTCTCCCCTGT--ATGTGCCACTGCCAGGAACACAATTATCATCTCATGGGAGCTGCACACATTTAATGGAACTTGGGAGCCAG--CACAGACTGTTTTCCTC--AGACAGTTTGAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223762635 1830 - 227556264 GCCACCTTG------CAGTGCCCGGTAGTGGGGACTGT-TCCACAGAGCCGT--------------GATCAAACCTCCAACT---------TCATTCTGGTCTTGGAGGAAAGCTGATCCCATATGAAGAGAAAGGGGCTGGTGGGGGTATTTGCAGGGCTGAAGCAAAGTCAGCGTCTATAGTTTGGCAAGCGGCAGCTGCAAACCATCCATCCCAGCACATGATAAATGCTTCTGACATTTCCTTCAGACACAGCGTGCTAGGGA-GCCTTTAAGTTCTCAAATAAGGCAGGAGTCTGCCTTATTGATCAGGTGCCTTTTATTAAAGGTTTCC-AAGCC-CCTCAGCTACAGAGGGAACAAGGGAACA-------CTCCGCTCAGCCTCCTCCACAGCCCCAGCCTTTCAGGCAGAGGGGATTATCGTTGTTGGAATAT-GGCATATACTTTAATTTGGTGGGGCTTTT------TTTAGTGCTTATGAAATGCACACTGGAACAGACTGGGATTAGGTAATTTTCACATTTACTTGGTACTTCCCTCTCTAA-----CCGCCATCTGATCTTCCAT-------ATACACATTTTAA-------------------GAAGAAAATAAAGAGAAAACACATCCTCCTAATGATCCTCCATATTAGAACTTACCATTCTGCTTTGAACTCCTGCTGCTCTGAGTCTCCCCCTGCCAGCAAGCACTTCTCTGCCAAGGCGGAGGGGCGGTGAAGGGGATTAGA-GGGCAGTCAGTGGCTTGCCTCTGGCGGGAGGTGGT-GGAGCGTCTCATTAGCGTTTGCTCCTTTCCTCC-AGCTGGGCTTCACTGGGCCCCTTTTCTTACCAACCCACCCTTCACTTCTCCCAGGCTGTCC--------CCTGCACTCAGATTCCCTCCAATCCTTCCAACAAGATGGCAGCAGGATGATTGGGACTAATAGGAGCTAAGCCAAG-AATTAAAGTTGCTTTTGTTCCAAACCTAAAACTTGAAA------GAACTCTTACATGGAAATGCCACCATCTCCCTTTTGTTTTATGCATAAACCCAACTG----------GTTCC--CCATCCTCTGGGCCTC-CTTCCTGCCCCTCGCTGGCACAGGGCATTGCACATA-CTGTGTGTTCAGCA---CATGCTGAGTGGAATCGAACAGATGCGGTCCTTGGAAA-GGGAG----CTTTTAGAAGAACTGATGGGGAAAGAATTGGG-GTAACTGCGGCCAG-------TTACTGGACGTTCTTGCTC----TTATTTATTGGTTGAATGAGAATG-AAAATATCTAAGATGTACCAA-GGCCCAGG-------------GAT-----AGTGG-------CATTAT-----TTCTCTGTTCCTCCTCCT-TACTCCCTCTTCTTCCCTCTTTTAGTGTGGGG-GAGTTACAGGAACGTA-AGTTTGGTGCAGTGATCCATTGAGTATATGTCAGGCTCTTATGAAAGTTAAATTTACCTAACATCCTACATTTTAGATAAGACCGTTCCAGATTTCCACGTCTTGACCCAAAAGATCCCTTCAGTGGTTTTCCTTACTAGGGCAATTCccttagtttcttacattcttccttcctctccttcctGGGACTAAGGCTGCAGAGTCCCAGGC---TGGAGAAATAG-CCAC--------------TGCCCATGGGTAT-TCTAGAAAGGGCTTCCCAGCCTCC--------------GCAGTGGGCCTGGAGAAGGACGCCTTC-TTT-TCACCACCGGGCTGTGATCTC--------GCAAGGCCTTAATGATGAGCTGAATGCGGTCTGTACTTGCGTGCCTGCCATCTGTCCCGAAGCAGCACTGAGAAG-CGGACTAAT----------------GCTGTCACCCCTAGCCCCTTCTGCAGGTCTCCCCTGT--ATGTGCCACTGCCAGGAACACAATTATCATCTCATGGGAGCTGCACACATTTAATGGAACTTGGGAGCCAG--CACAGACTGTTTTCCCC--AGACAGTTTGAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16812863 1827 - 220367699 GCCACCTTG------CAGTGCCCGGTAGTGGGGACTGT-TCCACAGAGCCGT--------------GATCAAACCTCCAACT---------TCATTCTGGTCTTGGAGGAAAGCTGATCCCATATGAAGAGAAAGGGGCTGGTGGGGGTATTTGCAGGGCTGAAGCAAAGTCAGCGTCTATAGTTTGGCAAGCGGCAGCTGCAAACCATCCGTCCCAGCACATGATAAATGCTTCTGACATTTCCTTCAGACACAGCATGCTAGGAA-GCCTTTAAGTTCTCAAATAAGGCAGGAGTCCGCCTTATTGATCAAGTGCCTTTTATCAAAGGTTTCC-AAGCC-CCTCAGCTACAGAGGGAACAAGGGAACG------------------CTCCTCCACAGCCCCAGCCTTTCAGGCAGAGGGGATTATTGTTGTTGGAATAT-GGCATATACTTTAATTTGGTGGGGCtttt------tttAGTGCTTATGAAACGCACAGTGGAACAGACTTGGATTAGGTAATTTTCACATTTACTTGGTACGTCCCTCTCTAA-----CCGCCATCTGATCTTCCAT-------ATACAcattttaa-------------------ggagaaaataaagagaaaacacgTCCTCCTAATGATCCTCCATATTAGAACTTACCATTCTGCTTTGAACTCCTGCTGCtctgagtctccctctgccaGCAAGCACTTCTCTGCCAAGGCAGAGGGGCGGTGAAGGGGATTAGA-GGGCAGTCAGTGACTTGCCTCTGGCGGGAGGTGGC-GGAGCGTCTCATTAGCGTTTGCTCCTTTCCTCC-AGCTGGGCTTCACTGGGCCCCTCTTCTTACCAACCCACCCTTCACTTCTCCCAGGCTGTCC--------CCTGTACTCAGATGCCCTCCAATCCTTCCAACAAGATGGCAGCAGGATGATTGGGACTAATAGGAGCTAAGCCAAG-AATTAAAGTTGCTTTTATTCCAAACCTAAAACTTGAAA------GAACTCTTACATGGAAATGCCACCATCTCCCTTTTGTTTTATGCATAAACCCAActg----------gttcc--ccatcctctgggccTC-CTTCCTGCCCTTCGCTGGCACAGGGCATTGCACATA-CTGTGTGTTCAGCA---CATGCTGAGTGGAGTCGAACAGATGCGGTCCTTGGAAA-GGGGG----CTTTTAGAAGAACTGATGGGGAAAGAATTGGG-GTAACTGCGGCCAG-------TTACTGGACGTTCTTGCTC----TTATTTATTGGTtgaatgagaatg-aaaatatcTAAGATGTACCAA-GGCCCAGG-------------GAT-----AGTGG-------CATTAT-----TTCTCTGTTCCTCCTCCT-TActccttcttcttccctcttttaGTGTGGGG-GAGTTACAAGAACGTA-AATTTGGTGCAGTGATCCATTGAGTATATGTCAGGCTCTTATGAAAGTTAAATTTACCTAACATCCTACATTTTAGATAAGACTGTTCCAGATTTCCACGTCTTGACCCAAAAGATCTCTTCAGTGGTTTTCCTTACTAGGGCAATTCCCTTAGTTTCTTatattcttccttcctctccttcctgggaCTAAGGCTGCAGAGTCCCAGGC---TGGAGAAATAG-CCAC--------------TGCCCATGGGTAT-TCTAGAAAGGGCTTCCCAGCCTCC--------------GCAGTGGGCCTGGAGAAGGACGCCTTC-TTT-TCACCACCGGGCTGTGATCTCGCAGGCTGGCAAGGCCTTAATGATGAGCTGAATGCGGTCTGTACTTGCGTGCCTGCCATCTGTCCCGAGGCAGCACTGAGAAG-CGGACTAAT----------------GCTGTCACCCCTAGCCCCTTCTGCAGGTCTCCCCTGT--ATGTGCCACTGCCAGGAACACAATTATCATCTCATGGGAGCTGCACACATTTAATGGAACTTGGGAGCCAG--CACAGACCGTTTTCCTC--AGACAgtttgat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82611047 1837 + 85787240 GCCACCTTG------CAGTGCCCGGTAGTGGGGACTGT-TCCACAGAGCCGT--------------GATCAAACCTCCAACT---------TCATTCTGGTGTTGGAGGAAAGCTGATCCCATAGGAAGAGAAAGGGGCTGGTGGGGGTATTTGCAGGGCTGAAGCAAAGTCAGCGTCTATAGTTTGGCAAGCGGCAGCTGCAAACCATCCATCCCAGCACATGATAAATGCTTCTGACATTTCCTTCAGACACAGCGTGCTAGGAA-GCCTTTCAGTTCTCAAATAAGGCAGGAGTCTGCCTTATTGATCAGGTGCCTTTTATTAAAGGTTTCC-AAGCC-CCTCAGCTACAGAGGGAACAAGGGAACA-------CTCCGCTCAGCCTCCTCCGCAGCCCCAGCGTTTCAGGCAGAGGGGATTATCGCTGTTGGAATAT-GGCATATACTTTAATTTGGTGGGGCTTTT------TTTAGTGCTTATGAAATGCACACTGGAACAGACTGGGATTAGGTAATTTTCACATTTACTTGGTACTTCCCTCTCTAA-----CCCCCATCTGATCTTCCAT-------ATACACATTTTAA-------------------GAAGAAAATAAAGAGAAAACACGTCCTCCTAATGAATCTCCATATTAGAACTTACCATTCTGCTTTGAACTCCTGCTGCTTTGAGTCTCCCTCTGCCAGCAAGCGCTTCTCTGCCAAGGCGGA-GGGCGGTGAAGGGGATTAGA-GGGCAGTCAGTGGCTTGCCTCTGGCGGGAGGTGGT-GGAGCGTCTCATTAGCGTTTGCTCCTTTCCTCC-AGCTGGGCTTCACTGGGCCCCTCTTCTTACCAACCCACCCTTCACTTCTCCCAGGCTGTCC--------CCTGCACTCAGATTCCCTCCAATCCTTCCAACAAGATGGCAGCAGGATGATTGGGACTAATAGGAGCTAAGCCAAG-AATTAAAGTTGCTTTTGTTCCAAACCTAAAACTTGAAA------GAACTCTTACATGGAAATGCCACCATCTCCCTTTTGTTTTATGCATAAACCCAACTG----------GTTCC--CCATCCTCTGGACCTC-CTTCCTGCCCCTCGCTGGCACAGGGCATTGTACATA-CTGTGTGTTCAGCA---CACGCTGAGTGGAATTGAACAGATGCAGTCCTTGGAAA-GGGAG----CTTTTAGAAGAACTGATGGGGAAAGAATTGGG-GTAACTGCGGCCAG-------TTACTGGACATTCTTGCTC----TTATTTATTGGTTGAATGAGAATG-AAAATATCTAAGATGTACCAA-GGCCCAGG-------------GAT-----AGTGG-------CATTAT-----TTCTCTGTTCCTCCTCCT-TACTCCCTCTTCTTCCCTCTTTTAGTGTGGGG-GAGTTACAGGAACGTA-AGTTTGGTGCAGTGATCCATTGAGTATATGTCAGGCTCTTATGAAAGTTAAACTTACCTAACATCCTACATTTTAGATAAGACTGTTCCAGATTTCCACGTCTTGACCCAGAAGATCCCTTCAGTGGTTTTCCTTACTAGGGCAATTCccttcgtttcttatattcttccttcctctccttcctGGAACGAAGGCTGCAGAGTCCCAGGC---TGGAGAAATAG-CCAC--------------TGCCCGTGGGTAT-TTGAGAAAGGGCTTCCCAGCCTCC--------------GCAGCGGGCCTGGAGAAGGATGCCTTC-TTT-TCACCACCGGGCTGTGATCTCGCAGGCTGGCAAGGCCTTCATGGTGAGCTGAATGCGGTCTGTACTTGCGTGCCTGCCATCTGTCCCGAGGCAGCACTGAGAAG-CAGACTAAT----------------GCTGTCACCCCTAGCCCCTGCTGCAAGTCTCCCCTGT--ACATGCCACTGCCAGGAACACAATTATCATCTCACGGGAGCTGCACACATTTAATGGAGCTTGGGAGCCAG--CACAGACCGTTTTCCTC--AGACAGTTTTAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14291559 1874 - 49578535 GCCGACTTGGGGTATCAGTGCCTGCTGGC-GGGACTGT-TCTACAAAGCTGTGCTCCAGCGTCCGCGACCAAACCTCCAGCG---------GCATTGTGGTCTTGGAAGAAAGCTGATTCCATGGGAAGTGAAAGGGCCTGGTGAGGGTGTTTGCAGGGCTGAGGCGAAGTCAGAATCTACAGTTCGGCCAGCGGCAGCTGCACACCATCCA-CCCAGCACGTGATAAATGCTTCTGACATTTCCTTCAGACACAGCGAGCTAGGAAGCCTTTTAGATTCTCAAAT---GCAGAACTCTGCCTTATTGATCAGGTGCCTTTCATTCAAGGTTTCC-AAGCC-CCTCAGCCACAG--------AGGGAATG-------CTCCCCTCAGCCTCCTCCACGGCCGCAGCCTTTCCAGTAGAGGCGATCGTCATTGTTGGAATAT-GGCATGTACTTTAATTTGGTGAGGATTCT--TCTTTTTAATGCTTATGAAATGCACACCAGAACAGACTGGGATTAGGTAATTTTCACATTTACTTGGTACTTCCCTCCCTAA-----CCCCCATCTGATCTTCCAT-------ATACACATTTTAA-------------------GAAGAAAATAAAGAGAAAACACGTCCTCCTAATGATCCTCCGTATTAGAACTTCCCACTCTGCTTTGAGCTCCTGCTGCTTCGAGTCTCCCACTGCCAGCAAGCGCTTCTCTGCCAAGGCGGGGGGACGGTGAAGGGAATTAAAGGGGCAGTCGGTGGCTCGCCTCTGGCTGGAGTTGGC-GGAGCGTCTCATTAGCGTTTGCTCTTTTCCTCC-AGCTGGGCTTCACCGGGCCCCTCTTCTTATCAAGCCATCCTTCACTTCTCCCAGGCTGTCC--------CCTGCACTCAGACCCCCTCCAATCCTTCCAGTAAGATGGCAGCAGTACGACTGGGACTCATTGGAGCTAAGCGGAG-AATTCAAGTTGCTTTTGTTACAAGCCTCAAACTTGAACATGAAGGAGCTCTTACAAGAAAATGCCACCGCCTCCCTTTTGTTGTGTGCATAAACCCAACTG----------TTTCT--GCATCCTCTGGGCCTC-CTTCCTGCCCCTCGTTGGCACAGGGCATTGTACGTA-GTGTGTGTCTGACA---CATGCTTAGTGGAATGGAACACATGCGGTCCTGGGAAATGGGGG---CCTCTTGGAGGAACTGATGGGGAAAGAATTGGG-ATAATTTTGGCCCA-------TTATTGGACATTCTTGCTCTTATTTATTTATTGGTTGAATGAGAATG-AAAACGTCTAAGATGTACCAAGGGTCCAGGGATTTGAGCCTGAGAT-----AGTGG-------CATGAT-----TTTTCTGTGCCTTCTCCT-TGCTCCCTCTTCTCCCCTCTTTCAGTGTGGGG-AAGTTTTGAGAACGCAGAGTTTGGTGTCAGGATCCATGGAGTATCTGCTGGGCTCTTATGCAAGTTAAGC-TACCTGACATCCTGCATCTTAGACAAGACTATTCCAGATTTCCACCTCTTAACCTGAAAGA---------------TCCTTACGAGGGCAATTCccttcctttcttatttccttccttcctctccttcctGGAACTAAGGCTGCGGAGTCCCAGGC---TGGAGAAACAGCCCACTGTTGAAGGGGGTGTGTCCCTGGGTTTGTTAAGAAAGGGACTCCCAACCTCC--------------CCAGGGGGCCTGGAGAAGGACACCTTCTTTT-TCACCACCGGGCTGTGATCTCGCAGGCTGGCAAGGCCTTAATGATGAAC-------GGTGTGTACTTGCTGGCCTGCCATCTGTCCCCAGGCAGCACTGAGAAC-GGGGCTGAT----------------GTCGTCAACCCTGGCGCCTTCTGCAGGGCTCTTCCGC--ACGTGCCACTGCTGGGAACAAAATTATCATCACGTGGGGGCTGCACACATTTAATGGAACATGGGAGCCAG--CACAGACCGTTTTCCTCAAAGACCGTTTTAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178851378 1677 + 195471971 ACAGCTCCACTGTCTC----TCTGCTAGTGGCGACTATATCTGCAGAGCCAG--------------GATAAAGCCTCCATCTTCTTTATCAGCATCCTGGTTTTTGAGG-ATGCTGGTTCTGTGCTGTGCAGAAGGACCTGCCAAG---------------GAAGTGATGTTAACACTCACAGTAGGGCCAGCA-TGGCTTGAGAGCATCCATCTTCTCAGGGGACAGTTGCGTCCGACATTCTCTTCATACCCTGTGTGCTAGGAAGGCTCTGGAATTCTCACGT---TTAGAACACAGCTTTACTGATCAGCTTCCTTTCATTTAAGGTTTCC-ATCCCTTCTCAGTCACAG--------AGGGAAAG-------CTCC-----------------ATCTCAGCCTTTTAGGTGAGGAGGATTGTCGCTGTTTGAA-GT-GGGTTGCAATTTAATTCTGTGTTGTTGCTGTTAGCTTCAGTTCTTAGCAAA--CACAAGGGAGTAGGCCATGATTAAGCAAATTGTATGTTTACTAGGTAATTCCCTCCCTAG-----CCTCTAACTGATCTTacac-------acacacacacacacacacacacacacaTGGTTAAAGAAAAGACAGAAAACACACAGCTTTATAATCTTTTTCCATATTAGAACCTGCCCATGAGCTTCAAACTT------------GTCTCCTATTGCCAGCAAGGGCCTGTCTACCAAGGCAGA-GGGTGGTG-AGGAAATTGTA--GGCA-CCAGAAGCTGTCCCTTGG-GGGAGGTGAC-AGAGGGTCATGT------------CTTTC----------------------CCCTCCTCCTTA--------------------------------------------------------CATTATGCCTTTCAACAAGATGGCAGCAGGAAGCATGAGGCTTGCCTGAGCTAAGCCTAG-GATTGGAATTGTTTTAGTTCCAAGATGAAACCTAGAGAGTAGAGAAACCCTTAAAC--AAATGGTA--GTGTGCCTTTCTCTTTTTGC----------CAT----------GTTCC--TC-----------CCC-CTTGCAGCCC-----TGGCAT-TGGTGCTGTGCAGAGCTGTGTGACCAGTCAGTCACGCTTTAGTAGATGGAACGTGTGCACTTCT--GAAT-GTGAGGCTCTCCTTCGAGACACTAGTGGAAGAAGACCTGGG-GTAGCCATGGTTGC-------TTCCTGAACCTTCTCACTC----TTCCTTATTGTTGAAAC--------------TCCAAGACCTGTCAA-GGAATAAG-------------GAT-----CTGGGACCAAGACATTATGCACGGTCTTTGTTCCAGCTCCT-TACT-CTTCACTTCCTCTCTTTCTATGTGGAGTTGGGCATGAGAACACAGAGTTCGCT-CAGTGGTCTATTGAGAGTGTGTCAGGTTTCAGTGGGAATTAAAGTTATCCATAATCCAAAGCTGTCGATGAGATGATTCCAGGT-------TCTTGGCCTCAGGGCTCCCTCTGACGTCCTTTCTC-CTGGGATGGTCCTCT--GGTTCTT-------------TTCTTCTTCCCCAGACTATGGCTG-AGAGCTTTGGGCCTTTCTAGGAAAGGCTCCC--------------CACTCC------T-GCTGGA-------TCCTAGCTTCC---------------CAACAGGCTCTGAGATAGATGCCTAG-CCT-CTGCCACCAGGCTA---------------GAGAGGCCTACATGATGAACTGATGGGGCTTTATGCTGAGTTACCTGCCCTTAGTCCCTGGGCAGCCTCGAGAAGCCAGACTAGTTTCTCCCTCCTACCGATCTCCTACCACCAGTTCCTG-TGCAGCTGCCATTTATTCGTGTGTTACTAGCAGGAGTGAGGTT---GTCTCCTGGGAGCTGCCCAGG--TGATAAAGCCTGGGAGCAAGTCTGTATACTGTCCTCCTA--AGATGGCTTCAT i mm10.chr1 I 124 C 0 s canFam3.chr7 36433514 1769 + 80974532 GACACCTTGTCGTAATAGAGCC-GGTGACAGCATCCCT-TCTGCAGAGCCAT--------------GATCCAGCCTCTGTCT---------GCATTCTGGTCTTGGAGGGGAGCTGATTCCATACCAA--AAAAGGGCGTGTTAAGGGTATTTGTGGGGCCCTGGCAAAGTTGGCTTTTATGATTTGGCAAGATGCAGCTGCAGACCATCCATCCCCACCCTTGATAAATGCTTCTGACATTTCCTTCAGGTAGAATGTATGAGGAAGGCTTTTGAATTCTCAAAT---GCAAGAGCCTACCGTACAGATCAGGTGCCTTTTACTAAAGGTCGCCAAAGCC-ACTTGGCCCCAG--------AGGGAATGCATGCTGCCCTCCTGGTCCCCCTCCATA--CCCAGCTTTGTAG-------------TCATTGTTGGAATATGGGTACATACCTTAATTTGTGGGGTTTTTT------CCCAATCCCTACCATATGCACCCTGGAGCAGGATGCAATTAGGTAAATATCATGCTTACTCAGCACACTCCACCCTACTCGATCCCCTGACTGACCTCCCATTCTCTACGCACCCATTTTAA-------------------AAAGAAACTAAAGAGAACACATGTCCTCCAATTAATCCATGATATTAGAGTTTACCATTCTGCTTTGAGCTTATG------------TCCTGCTGCAGGCAAGGGCTTCTCTGCT-AAGCACTGGGACAG-GGAGGGAATTCAA--GGTGGTCAGTGGCTCACCCTTGGCCAGAGGAGGCAGGAGCATCCTGTTCACCTTGACCCCCCCACCCCAAGCTGGGCTTCAC----CCCCTCTTCTCACCAGCACCTCATCCACCTCTCCT-GGCTGTCCAGGTTTATCCTGTGC---------CATCAATCCTTCCAGCAAGGTGGT----------CTGGGGCTCACTGTAGCCTCACTGAGTAATTC---TTGCTGTTGTGCCAAGCCTACAACTCAAAAAGAAAGTAA-TCCAAAATGGAAATGCAAGTATCGCCCTTCTGCGTTGCAGGGAGACCTGGCTGTTCTTTGCGTGTTCCAACCATGTCCTTGGCATCTCTTCCTCCCAGTC--TGGC-CAGGGCTCCCGGCACA-GTGTGTG----------CAG--TTGGTGAGATGGCACCAATGGGCTCCT-----A-GGGAG-------------GAATGGACAGGGAAAGAATTGGGAGTAATTGTGGCTAGCACTACTTTATTGAACTCTCTTACTT----TTTCTTACTG----AAGGAGAGTGAAAAATCTCTAAAACTTACCAAGGGTCCAGG-------------GCTCTGGGACTGG-------CATGAT-----ATC----CTCCAGCTCCTATGCTCTCTCTCCTCCCCTTCTTCACTGTGCTG-GGGTCCTGAGAATGTAGGGCCCAGTGTGGCGATTCATTGAGTACTTGTCAGACTTTGACATGAGAT-AATTTACCTCACTTCCCAAATCTTACCCAGGCCTGTTCCAGATTTCAACCCCTTGACCCCAAAGTTCCCTCCAATGCCTTTTCTTACAAGGATAAGTCCCT------------------GTTCTCCTCTTGCCTGG-------GCTCCTGGGTTCCAGGC---TGGATGAG-AGCCCAT--------------------------T-TAAGGAAAGGAATCCCCAGCCTGCTTCAAACTAAACTTCCTGTGAGCCCTGAAAAGGACACCTTC-TCTCCCACCACAGGGCAGGCAGTCCGTAGGCTGGAGAGGCCATAGT---------------TTCTGTTCCAGCTTCCCTGATCTCTGTGCCCAGGAAGCACTGAGAGCCCAGGCTAAT----------------GCTGGCACCCCAAGGTTCTGTT-CAGATGTCATCCAT--ACGTGGTCCTGCCAGGAGCAAGACGATCATCTTGTAGGGGATGCACATACTCAA--GAACTTGGAAGCCAG--CATAGACAGTCCTCCTAAATAACAGCTTTAT i canFam3.chr7 C 0 I 216 a score=1614937.000000 s hg38.chr1_KI270759v1_alt 283883 489 + 425601 AAAGAAAATGGACTTTGGGGAACAACGCCAGAAAGACATCCAGTATACCT---AATTATTAGGCGAGTGTGG-TCATTGCCTCTTTGTCTTAGATAACTAGGTTGTTGATTACGGTGCTTTGCCAAACTCCACGGTGGATCTGGTAGCTGGTATTTCTGGGCAGACACCAGACTGAGTTACTTCTTTTCAGAGTTCTGGACGTTACTGATCTAGGTGAA-AGGCCAGAAGCAGTGGGATATTGAAATTCTCAGAA--GTGGAGAGAC-TGTGGCAAGGAGGTACAGAAGACACTAAATC-GGGTGCCATGTTAGCAAGCTCAAGTTTTCATATTGATCATGCAGTGAGCTGCAGAGAAGAAAAGCAGCTTTGCCTGGGT----CCTGTTGTTCTCCAAGCCAAATAGCATCTCTGTGCTGACAGAC-GAGTCTGCGTC-------TGCAGACGCAGCATCTCTTGA---CTGTTTGCTATTTAACGACAGTC---------------------GTAACACATGAGTGAGCTTTA s panTro4.chr1 225040341 489 + 228333871 AAAGAAAATGGACTTTGGGGAACAACGCCAGAAAGACATCCAGTATACCT---AATTATTAGGCGAGTGTGG-TCATTGCCTCTTTGTCTTAGATAACTAGGTTGTTGATTACAGTGCTTTGCCAAACTCCACGGTGGATCTGGTAGCTGGTATTTCTGGGCAGACACCAGACTGAGTTACTTCTTTTCAGAGTTCTGGACGTTACTGATCTAGGTGAA-AGGCCAGAAGCAGTGGGATATTGAAATTCTCAGAA--GTGGAGAGAC-TGTGGCAAGGAGGTACAGAAGACACTAAATC-GGGTGCCATGTTAGCAAGCTCAAGTTTTCATATTGATCATGCAGTGAGCTGCAGAGAAGAAAAACAGCTTTCCCTGGGT----CCTGTTGTTCTCCAAGCCAAATAGCATCTCTGTGCTGACAGAC-GAGTCTGCGTC-------TGCAGACGCAGCATCTCTTGA---CTGTTTGCTATTTAACGACAGTC---------------------GTAACACATGAGTGAGCTTTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226409240 487 - 229942017 AAAGAAAATGGACTTTGGGGAGCAACGCCAGAAAGACATCCAGTATACCT---AATTATTAGGCGAGTGTGG-CCATTGCCTCTTTGTCTTAGATAACTAGGTTGTTGATTACGGTGCTTTGCCAAACTCCACGGTGGATCTGGTAGCTGGTATTTCTGGGCAGGCACCAGACTGAGTTACTTCTTTTCAGAGTTCTGGACGTTACTGATCTAGGTGAA-AGGCCAGAAGCAGTGGGATATTGAAATTCTCAGAA--GTGGAGAG---TGTGGCAAGGAGGTACAGACGACACTAAATC-AGGTGCCATGTTGGCAAGCTCCAGTTTTCATGTTGATCATGCAGTGAGCTGCAGAGAAGAGAAACAGCTTTCCCTGGGT----CCTGTTGTTCTCCAAGCCAAACAGCATCTCTGTGGTGACAGAC-GAGTCTGCGTC-------TGCAGACGCAGCATCTCTTGA---CTGTTTGCTATTTAACGACAGTC---------------------GTAACACATGCGTGAGCTTTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140292672 489 - 143122389 GAAGAAAATGGACTTTGGGGAACAACGCCAGAAAGACATCCAGTATACCT---AATTATTAGGCGAGTGTGG-CCATTGCCTCTTTGTCTTAGATAACTAGGTTGTTGATTATGGTGCTTTGCCAAACTCCACAGTGGATCTGGTAGCTAGTATTTCTGGGCAGACACCAGACTGAGTTACTTCTTTTCAGAGTTCTGGACGTTACTGATCTAGGTGAA-AGGCCAGAAGCAGTGGGATATTGAAATTCTCAGAA--GTGGAGAGAA-TGTGGCAAGGAGGTACAGAAGACACTAAATT-GGGTGCCATGTTAGCAAGCTCAAGTTTTCATATTGATCATGCAGTGAGCTGCAGAGAAGAAAAACAACTTTCCCTGGGT----CCTGTTGTTCTCCAAGCCAAATAGCATCTCTGTGGTGACAGAC-GAGTCTGCGTC-------TGCAGACGCAGCATCTCTTGA---CTGTTTGCTATTTAATGACAGTC---------------------GTAACACATGAGTGAGCTTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17001002 486 - 229590362 AAAGAAAATGGACTCTGGGGAACAACGCCAGAAAGACATCCAGTATACCT---AATTATTAGGCGAGCGTGG-TCATTGCCTCTTTGCTTTAGATAGCTAGGTTGTTGATTATGGTGCTTTGCCGAACTCCACGGTGGATCTGGTAGCTAGTATTTCTGGGCAGACACCAGACTGAGTTACTTCTTTTCAGAGTTCTGGACGTTACTGATCTAGGTGAA-A-GCCAGAAGCAGTGGGATATTGAAATTCTCAGAA--GTGGAGAGAA-TGTGGCAAGGAGGTACAGAAGACACTAAATC-GGGGGCCATGTTAGCAAGCTCAGGTTTTCATGTTGATCATGAAGTGAGCTGCAGAGAAGAAAA-CAGCTTTCCCTGGGT----CCTGTTGTTCTCCAAGCCAAACAGCATCTCTGTGGTGACAGAC-GAGTCTGTGTC-------TGCAGACACAGCATC-CTTGA---CTGTTCGCTATTTAACGACAGTC---------------------GGAACACATGAGTGAGCTTTA i rheMac3.chr1 C 0 I 3 s macFas5.chr1 223764465 486 - 227556264 AAAGAAAATGGACTCTGGGGAACAACGCCAGAAAGACATCCAGTATACCT---AATTATTAGGCGAGCGTGG-TCATTGCCTCTTTGCTTTAGATAGCTAGGTTGTTGATTATGGTGCTTTGCCGAACTCCACGGTGGATCTGGTAGCTAGTATTTCTGGGCAGACACCAGACTGAGTTACTTCTTTTCAGAGTTCTGGACGTTACTGATCTAGGTGAA-A-GCCAGAAGCAGTGGGATATTGAAATTCTCAGAA--GTGGAGAGAA-TGTGGCAAGGAGGTACAGAAGACACTAAATC-GGGGGCCATGTTAGCAAGCTCAGGTTTTCATGTTGATCATGAAGTGAGCTGCAGAGAAGAAAA-CAGCTTTCCCTGGGT----CCTGTTGTTCTCCAAGCCAAACAGCATCTCTGTGGTGACAGAC-GAGTCTGTGTC-------TGCAGACACAGCATC-CTTGA---CTGTTCGCTATGTAACGACAGTC---------------------GGAACACATGAGTGAGCTTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16814690 487 - 220367699 aaagaaaatggacTCTGGGGAACAACGCCAGAAAGACATCCAGTATACCT---AATTATTAGGCGAGCGTGG-TCATTGCCTTTTTGCTTTAGATAGCTAGGTTGTTGATGATGGTGCTTTGCCAAACTCCAAGGTGAATCTGGTAGCTAGTATTTCTGGGCAGACACCAGACTGAGTTACTTCTTTTCAGAGTTCTGGACGTTACTGATCTAGGTGAA-AGGCCAGAAGCAGTGGGATATTGAAATTCTCAGAA--GTGGAGAGAA-TGTGGCAAGGAGGTACAGAAGACACTAAATC-GGGTGCCATGTTAGCAAGCTCAGGTTTTCATGTTGATCATGAAGTGAGCTGCAGAGAAGAAAAGCAACTTTCCCTGGGT----CCTGTTGTTCTCCAAGCC-AACAGCATATCTGTGGTGACAGAC-GAGTCTGTGTC-------TGCAGACACAGCATC-CTTGA---CTGTTCGCTCTTTAACGACAGTC---------------------GGAACACATGAGTGAGCTTTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82612884 488 + 85787240 AAAGAAAATGGACGCTGGGGAACAACGCCAGAAAGACATCCAGTATACCT---AATTATTAGGCGAGCGTGG-TCATTGCCTCTTTGCTTTAGATAGCTAGGTTGTTGATTAGGGTGCTTTGCCGAACTCCATGGTGGATCTGGTAGCTAGTATGTCTGGGCAGACACCAGAGTGAATTACTTCTTTTCAGACTTC-AGACGTTACTGATCTAGGTGAA-GGGTCGGAGGCAGTGGGATATTGAAATTCTCAGAA--GTGCAGAGAA-TGTGGCAAGGAGGTACAGAAGACACTAAATC-GGGTGCCATGTTAGCAAGCTCAGGTTTTCATGTTGATCATGAAGTGAGCTGCAGAGAAGAAAAGCAACTTTCCCTGGGT----CCTGTTGTTCTCCAAGCCAAACAGCATCTCTGTGGTGACAGAC-GAGTCTGTGTC-------TGCAGACACAGCATCTCTTGA---CTGTTTGCTATTTAACGACAGTC---------------------GGAACACATGAGTGAGCTTTA i chlSab2.chr25 C 0 I 3 s calJac3.chr19 14293433 486 - 49578535 AAAGAAAATGGACTTTGGGGAACAACGCCAGAAAGGTATCAGGTATTCCT---CTTTATTAGGCGAGTGTGG-CCATGGCCTCTCTGTTTTAGATCGCTAGGTGGTTGATTATGGTGCTTTGCCAAA-TCCACAGTGGATCCGGTAGCTAGTATTTTTGGGTGGGCACCAGACTGAGTTACTTGTTTTCAGAGTTCTGGACATTACTTACCCAGGTGAA-AGGCCAGAAGCAGTGGG-----------------A--GTGGAGAGAA-GGTGGAGAGGAAGTACTGAAGTCACT-AATC-AGGTGCCACGTTAGCAAGCTGAAGTTTTCATATGTATCATGAAGCGA--TGCAAAGAAAAAGA---ACTCGCCCTGCGT----CCTGTTGCCTTCCAAGCCAGCCAGCATCTCCGTGGTGACAGAC-GAGCCTGCATC-------AGCAGAGGAAGCATCTCCTGA---CTGCTCGCTATTTCACGACAGACCTATTCTTTAGCTCTTCACTGGTAACACATGAGTGAGCGTCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178853055 406 + 195471971 AAAGCAAATGGACTAAAGATGTACCTGCAAGGAAGATTCC-----TACCTAAGAATTACTATGATAGT-CGG-TGCTGACACTTTTATTTCAGATAAATAAGTTATTTATAA------------------------------------TAGAATCTGTGTG------------------------------------------------TCTAGGTCAATAGGCCAGAAGCAACGAGATATTGAGATTCTTGGGG--CCAGGAAGAACCCCAGCAGTGAGATACTAGAGACAGCAGAGC-AAGTGTTCTG-TAGCAAGCTGAAGTTTTCCATTTG---ATATAGAGGGTTCCAGAAGAAAACA-CTGCTTTCCCATTGTCCTGCCTGTTGTTTTCCAAGTCAATCAGTGGTTCTCCGGTGACAGCC-AGGGCTGCAAC-------ACCAGACACAGCACTTCTTAAGTCTTGCTTGATCTGTAGCTGAGCTC---------------------TTGGTGGTAGCATAAGCATTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36435499 507 + 80974532 AAAGAAAAGGGTCTTCAGTGATGAATGCCAGAAAGATAT-----ATGCGG---ACTTATTAGAGGATCATGGCTCCTTATCTTTTTGTTTTGGATAACCAGCTGGCTTCTTATGGTACCTTCCCAAATTCCATGCCATATGTGG-AGCTGGTATTCCTAGATGGTTACT--------TGACTTATTCTTAGAGTTCTGGGTGTTCCTTATCGAGATCAG-AGGCCAGAAGCAGTGGGGAGGTGAGTTCCCCGGGGCCCTGGAGAACC-CCCTGCAATGAGGTGCAGAAGGCATGGCATCAGGGGGTCCGGTTAGCACGCCAAGGTTTTTGTATTTATAATAAAGTGGGCTGCAGAAAAGGAAAGCAGCTTTCCCTTGGT----CCTGTTGTTTTCCAGACCAGACAGCAG-TCCCTGGTGACAGACGGGGTGTGCGTCTGTCGGATGCAGATGCAGCATTCCCTGA---GTGTTTGCTATTTAACGACAGATCTACTATTTAGCTTTGCAGGCGTAACACATGAGTGAGCTTTA i canFam3.chr7 I 216 C 0 a score=1748.000000 s hg38.chr1_KI270759v1_alt 284372 2 + 425601 CT s panTro4.chr1 225040830 2 + 228333871 CT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226409727 2 - 229942017 CT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293161 2 - 143122389 CT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223764951 2 - 227556264 GT i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16815177 2 - 220367699 GT i papAnu2.chr1 C 0 I 1 s calJac3.chr19 14293919 2 - 49578535 GT i calJac3.chr19 C 0 I 1 s mm10.chr1 178853461 2 + 195471971 GT i mm10.chr1 C 0 I 2 e canFam3.chr7 36436006 0 + 80974532 C e rheMac3.chr1 17001488 3 - 229590362 I e chlSab2.chr25 82613372 3 + 85787240 I a score=11721.000000 s hg38.chr1_KI270759v1_alt 284374 17 + 425601 CATGTGGGCCCTTTATT s panTro4.chr1 225040832 17 + 228333871 CATGTGGGCCCTTTATT i panTro4.chr1 C 0 I 14 s ponAbe2.chr1 226409729 17 - 229942017 CATGTGGGCCCTTTAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293163 17 - 143122389 CACGTGGGCCCTTTATT i nomLeu3.chr5 C 0 C 0 s mm10.chr1 178853465 17 + 195471971 GAAACAGGCCCTTTATT i mm10.chr1 I 2 C 0 e canFam3.chr7 36436006 0 + 80974532 C e calJac3.chr19 14293921 1 - 49578535 I e rheMac3.chr1 17001488 3 - 229590362 I e chlSab2.chr25 82613372 3 + 85787240 I e papAnu2.chr1 16815179 1 - 220367699 I e macFas5.chr1 223764953 1 - 227556264 I a score=2682.000000 s hg38.chr1_KI270759v1_alt 284391 8 + 425601 AACAATAA s ponAbe2.chr1 226409746 8 - 229942017 AACAATAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293180 8 - 143122389 AACAATAA i nomLeu3.chr5 C 0 C 0 s mm10.chr1 178853482 8 + 195471971 GATAGGAA i mm10.chr1 C 0 I 4 e canFam3.chr7 36436006 0 + 80974532 C e calJac3.chr19 14293921 1 - 49578535 I e rheMac3.chr1 17001488 3 - 229590362 I e chlSab2.chr25 82613372 3 + 85787240 I e papAnu2.chr1 16815179 1 - 220367699 I e macFas5.chr1 223764953 1 - 227556264 I e panTro4.chr1 225040849 14 + 228333871 I a score=2373.000000 s hg38.chr1_KI270759v1_alt 284399 8 + 425601 GCCGCCTC s ponAbe2.chr1 226409754 8 - 229942017 GCCGCCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293188 8 - 143122389 GCCGCCTC i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178853490 4 + 195471971 I e canFam3.chr7 36436006 0 + 80974532 C e calJac3.chr19 14293921 1 - 49578535 I e rheMac3.chr1 17001488 3 - 229590362 I e chlSab2.chr25 82613372 3 + 85787240 I e papAnu2.chr1 16815179 1 - 220367699 I e macFas5.chr1 223764953 1 - 227556264 I e panTro4.chr1 225040849 14 + 228333871 I a score=4333.000000 s hg38.chr1_KI270759v1_alt 284407 6 + 425601 TGTGGC s panTro4.chr1 225040863 6 + 228333871 TGTGGC i panTro4.chr1 I 14 C 0 s ponAbe2.chr1 226409762 6 - 229942017 CGTGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293196 6 - 143122389 CGTGGC i nomLeu3.chr5 C 0 C 0 s canFam3.chr7 36436006 5 + 80974532 -GTGGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178853490 4 + 195471971 I e calJac3.chr19 14293921 1 - 49578535 I e rheMac3.chr1 17001488 3 - 229590362 I e chlSab2.chr25 82613372 3 + 85787240 I e papAnu2.chr1 16815179 1 - 220367699 I e macFas5.chr1 223764953 1 - 227556264 I a score=114123.000000 s hg38.chr1_KI270759v1_alt 284413 224 + 425601 GGCTGGGCCCCGCGGGGTCGGGGGGTGGGGGTGCCCAACGTGGCAGGGAGGCCTGCAAGGGGAGGCCGAGGCGCCGGTGGAAGCACAAACCACCCGGCGAGTCAGAGCAGGGGTCGGGGCCCCTGGCCGCACCGTGCCGCGCATGCGCAGGGTCCCGGGGTCCCTGGGGTCCCGGGTTTGTGCCCCCGGGGCGGCTGGGCCCCGCGGGAGGGGACGGCCAACGC s panTro4.chr1 225040869 224 + 228333871 GGCTGGGCCCTGCGGGGTCGGGGGGTGGGGGTGCCCAACGTGGCAGGGAGGCCTGCAAGGGGAGGCCGAGGCGCCGGTGGAAGCACAAACCACCCGGCGAGTCAGAGCAGGGGTCGGGGCCCCTGGCCGCACCGTGCGGCGCATGCTCAGGGTCTCGGGGTCCCTGGGGTCCCGGGTTTGTGCCCCCGGGGCGGCTGGGCCCCGCGGGAGGGGACGGCCAACGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226409768 219 - 229942017 GGCTGGGCCCTGCG-----GGGGGCGGGGGGTGCCCAACGTGGCAGGGAGGCCTGCAAGGGGAGGCCGAGGCGCCGGCAGAAGCACAAACCACCCGGCGAGTCACAGCAGGGGTCGGGGCCCCTGGCCGCACCGTGCCACGCATGCTCGGGGTCCCGGGGTCCCTGGGGTCCCGGGTTTGCGCCCCCGGGGCGGCTGGGCCCCACGGAAGGGGACGGCCAACGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293202 218 - 143122389 GGCTGGGCCCCGT------GGGGTTCGGGGGTGCCCAACGTGGCAGGGAGGCCTGCAAGGGGAGGCCGAGGCGCTGGTGGAAGCACAAACCACCCGGCGAGTCAGAGCAGGGGTCGGGGCCCCTGGCTGCACTGTGCCACGCATGCTTGGGGTCCCGGGGTCCCCGGGGTCCTGGGTTTGCGCCCCCGGGACGGCTGGGCCCCGCGGGAGGGGAGGGCCAACGC i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178853490 4 + 195471971 I e canFam3.chr7 36436011 0 + 80974532 C e calJac3.chr19 14293921 1 - 49578535 I e rheMac3.chr1 17001488 3 - 229590362 I e chlSab2.chr25 82613372 3 + 85787240 I e papAnu2.chr1 16815179 1 - 220367699 I e macFas5.chr1 223764953 1 - 227556264 I a score=7200.000000 s hg38.chr1_KI270759v1_alt 284637 2 + 425601 GG s panTro4.chr1 225041093 2 + 228333871 GG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226409987 2 - 229942017 GG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293420 2 - 143122389 GG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17001491 2 - 229590362 GG i rheMac3.chr1 I 3 C 0 s macFas5.chr1 223764954 2 - 227556264 GG i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16815180 2 - 220367699 GG i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82613375 2 + 85787240 GG i chlSab2.chr25 I 3 C 0 s calJac3.chr19 14293922 2 - 49578535 GG i calJac3.chr19 I 1 C 0 e mm10.chr1 178853490 4 + 195471971 I e canFam3.chr7 36436011 0 + 80974532 C a score=82033.000000 s hg38.chr1_KI270759v1_alt 284639 27 + 425601 AAATGGGCCCTTTATTCACAATAAGTG s panTro4.chr1 225041095 27 + 228333871 AAATGGGCCCTTTATTCACAATAAGTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226409989 26 - 229942017 AAAT-GGCCCTTTATTCACAGTAAGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293422 27 - 143122389 AAATGGGCCCTTTATTAACAATAAGTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17001493 27 - 229590362 AAATGGGCCTCTTATTGACAGTAAGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223764956 27 - 227556264 AAATGGGCCTCTTATTGACAGTAAGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16815182 27 - 220367699 AAATGGGCCCCTTATTGACAGTAAGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82613377 27 + 85787240 AAATGGGCCCCTTATTGACAGTAAGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14293924 27 - 49578535 AAATGGGCCTGTCTTTAATAACAAGTA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36436011 26 + 80974532 AAATGGGCCC-TTATTAACAATGAGTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178853490 4 + 195471971 I a score=313635.000000 s hg38.chr1_KI270759v1_alt 284666 85 + 425601 CCAAAATCCAAACTGAACACATCTAAAAAAATTCTAA--T-TAAGGAGCGTCCACTGCTG-CT-TTCTC-AAAAATTCCTTCTGTGCTATT s panTro4.chr1 225041122 85 + 228333871 CCAAAATCCAAACTGAACACATCTAAAAAAATTCTAA--T-AAAGGAGCGTCCACTGCTG-CT-TTCTC-AAAAATTCCTTCTGTGCTATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226410015 85 - 229942017 CCAAAATCCAAACTGAACACATCTAAAAAAATTCTAA--T-TAAGGAGCGTCCACTGCTG-CT-TTCTC-AAAAATTCCTTCTGTGCTATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293449 85 - 143122389 CCAAAATCCAAACTGAACACGTCTAAAAAAATTCTAA--T-TAAGGAGCGTCCACTGCTG-CT-TTCTC-AAAAATTCCTTCTGTGCTATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17001520 85 - 229590362 CCAAAATTCAAACTGAACACATCTGAAAAAATTCTAA--T-TAAGGAGCGTCCACTGCTG-CT-TTCTC-AAAAATTCCTTCTGTGCTATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223764983 85 - 227556264 CCAAAATTCAAACTGAACACATCTGAAAAAATTCTAA--T-TAAGGAGCGTCCACTGCTG-CT-TTCTC-AAAAATTCCTTCTGTGCTATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16815209 85 - 220367699 CCAAAATTCAAACTGAATACATCTGAAAAAATTCTAA--T-TAAGGAGCGTCCACTGCTG-CT-TTCTC-AAAAATTCCTTCTgtgctatt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82613404 85 + 85787240 CCAAAATTCAAACTGAACACATCTGAAAAAATTCTAA--T-TAAGGAGCGTCCACTGCTG-CT-TTCTC-AAAAATTCCTTCTGTGCTATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14293951 84 - 49578535 CCAAAATCCAAACTGAACACGCCTGAAAGAA-TCTAA--T-TCAGCAGTGTCCACGGCGG-CT-TCCTC-AAACACTCCTTCCACACCAGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178853494 88 + 195471971 CCCAAACCCAAATTGAGCACATCTGAAAGCATTCTGACTT-TAAGAAGTGGTCATTGGTATCT-CTCTC-AAAAATTCCTTTAGTGATATT i mm10.chr1 I 4 I 1862 s canFam3.chr7 36436037 84 + 80974532 CCAAGCGCCAAAGTGGGTGCATTGGGAAGAATTCTAA--TGTAAGGAGTGCCCACGGCTG-CTGTGCTCAAAAAAGTCCTTCCATGC---- i canFam3.chr7 C 0 C 0 a score=529677.000000 s hg38.chr1_KI270759v1_alt 284751 171 + 425601 AAATATTTTCTCTTTCCAATGGATATTT----------------ACCAT----------TTCTACTCACAGTAGTTTTTCTACCAAGTATTCAGAAAAACCTCCAGTTGTCACTTACCCAGTGTTTACCAAAAATCAGGC----AGAAGAGCGT-GGTGGAAGTTGGAAGACCTTAG-TGTAACCCGCGTCTATAAAAACTGG s panTro4.chr1 225041207 171 + 228333871 AAATATTTTCTCTTTCAAATGGATATTT----------------ACCAT----------TTCTACTCACAGCAGTTTTTCTACCAAGTATTCAGAAAAACCTCCAGTTGTCACTTACCCAGTGTTTACCAAAAATCAGGC----AGAAGAGCGT-GGTGGAAGGTGGAAGACCTTAG-TGTAACCCGCGTCTATAAAAACTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226410100 167 - 229942017 AAATATTTTATCTTTCAAATGGATATTT----------------ACCAT----------TTCTACTCAC---AGTTTTTCTAGCAAGTATTCAGAAAAACCTCCAGTTGTCACTCACCCAGTGTTTACCAAAAATCA-GC----AGAAGAGCGT-GGTGGAAGTTGAAAGACCTTAG-TGTAACCCGCGTCTATAAAAATTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293534 168 - 143122389 AAATATTTTATCTTTCAAATGGATATTT----------------ACCAT----------GTCTACTCAC---AGTTTTTCTATCAAGTATTCAGAAAAACCTCCAGTTGTCACTCACCGAGTGTTTACCAAAAATCAGGC----AAAAGAGCGC-GGTGGAAGTTGAAAGACCTTAG-TGTAACCCGCATCTATAAAAATTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17001605 170 - 229590362 AAATATTTTATCTTTCAAATGGATATTT----------------ACCAT----------TCCTACTCACAGTAGTGTTTCTATCAAGTATTCAGAAAAATC-CCAGTTGTCACTCATCCAGTGTTTACCAAAAATCAGGC----AAAAGAGCGT-GGTGGAAGTTGAAAGACCTTAG-TGTAACCCTCATCTATAAAAATTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223765068 170 - 227556264 AAATATTTTATCTTTCAAATGGATATTT----------------ACCAT----------TCCTACTCACAGTAGTGTTTCTATCAAGTATTCAGAAAAATC-CCAGTTGTCACTCATCCAGTGTTTACCAAAAATCAGGC----AAAAAAGCGT-GGTGGAAGTTGAAAGACCTTAG-TGTAACCCGCATCTATAAAAATGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16815294 170 - 220367699 aaatattttatctttcaaatggATATTT----------------ACCAT----------TCCTACTCACAGTAGTTTTTCTATCAAGTATTCAGAAAAATC-CCAGTTGTCACTCATCCAGTGTTTACCAAAAATCAGGC----AAAAGAGCAT-GGTGGAAGTTGAAAGACCTTAG-TGTAACCCGCATCTATAAAAATTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82613489 170 + 85787240 AAATATTTTATCTTTCAAATGGATATTT----------------ACCAT----------TTCTACTCACAGTAGTTTTTCTATTAAGTATTCAGAAAAATC-CCAGTTGTCACTCACCCAGTGTTTACCAAAAATCAGGC----AAAAGAGCGT-GGTGGAAGTTGAAAGACCTTAG-TGTAACCCGCATCTATAAAAATTGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14294035 172 - 49578535 ACATATTTTATCCTTCAAATGGATACCT----------------CCCAT----------TTCTACCCACCCTGGTCTACCTATCAAGTATTCAGAAACATCTCCAGCTGTGACTCACTGAGTGCTTACCAAAAATCAGGC----AAGAGAGAGTGGGTGGAAGTTGAAAGACCTAAG-TGTAACCTGCATCTATAAAAATTGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36436121 198 + 80974532 ---CATTTTGTCTCCTAAATGGACATGTTTCAAAAGAGGAAATAACCATAATAGCCACAAACTAACCACAACCGCGTTCCCACCCAGTATTCAGAAAAATCTCCAGTTGTCACTTACCCAGGATTTACCAAAATTGAAGCGAATGAAAGAGTGT--GTGGAGATTGGAAGTCCTGAGCTCTGCCTTGGATCTATAAGACTTGG i canFam3.chr7 C 0 C 0 e mm10.chr1 178853582 1862 + 195471971 I a score=402973.000000 s hg38.chr1_KI270759v1_alt 284922 135 + 425601 GCGTCCAggccgggcacggtggctcacgcctgtattcccagcacgttgggagtccaaggcaggaggatcacttgagtccaggagttcaagaccagcccggacaacatagaaaaaccctgtctgtacaagaaattt s panTro4.chr1 225041378 135 + 228333871 GCGTCCAggccgggcacggtggctcacgcctgtattcccagcacgttgggagtccaaggcaggaggatcacttgagtccaggagttcaagaccagcctggacaacatggagaaaccctgtctgtacaagaaattt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226410267 135 - 229942017 GTGTCCAggccgggcacggtggctcccgcctgtattcccagcacgttgggaatccaaggcaggaggatcacttgagtccaggagttcaggaccagcctggacaacatggagaaaccctgtctgtacaagaaattt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293702 135 - 143122389 GTGTCCAggccgggcacagtggctcacgcctgtattcccagcactttgggagtccaaggcaggaggatcacttgagtccaggagttcaagaccagcctggacaacatggagaaaccctgcctgtacaagaagttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17001775 135 - 229590362 GTGTCCAggccgggcacagtggctcaggcctgtaatcctagcactctgggagtccaaggcaggaggatcacttgagtccaggagttcgagaccagcctggacaacatggagaaaccctgtgtgcacaagaaattt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223765238 135 - 227556264 GTGTCCAggccgggcacagtggctcaggcctgtaatcctagcactctgggagtccaaggcaggaggatcacttgagtccaggagttcgagaccagcctggacaacatggagaaaccctgtgtgcacaagaaattt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16815464 135 - 220367699 Gtgtccaggccgggcacagtggctcaggcctgtaatcctagcactctgagagtccaaggcaggaggatcacttgagtccaggagttcgagaccagcctggacaacatggagaaaccctgtgtgtacaagaaattt i papAnu2.chr1 C 0 I 310 s chlSab2.chr25 82613659 132 + 85787240 GTGTCCAggccgggtacagtggctcaggcctgtaatcctagcactctgggagtccaaggcaggaggatcacttgagtcc---agttcgagaccagcctggacaacatggagaagccctgtctgtacaagaaattt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14294207 135 - 49578535 GTGTCTAggccgggcacggtggctcgcacctgaattcccagcactttgggaggccaaggcaggaggatcacttgagtccaggagtttgagaccagcctggacaacatagagaaaccctgtctgtctgagaaataa i calJac3.chr19 C 0 C 0 e mm10.chr1 178853582 1862 + 195471971 I e canFam3.chr7 36436319 0 + 80974532 C a score=17040.000000 s hg38.chr1_KI270759v1_alt 285057 6 + 425601 aaaaat s panTro4.chr1 225041513 6 + 228333871 aaaaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226410402 6 - 229942017 aaaagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293837 6 - 143122389 aacaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17001910 6 - 229590362 aaaaat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223765373 6 - 227556264 aaaaat i macFas5.chr1 C 0 I 299 s papAnu2.chr1 16815909 6 - 220367699 aaaaat i papAnu2.chr1 I 310 C 0 s chlSab2.chr25 82613791 6 + 85787240 aaaaat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14294342 6 - 49578535 aaaaat i calJac3.chr19 C 0 C 0 e mm10.chr1 178853582 1862 + 195471971 I e canFam3.chr7 36436319 0 + 80974532 C a score=31284.000000 s hg38.chr1_KI270759v1_alt 285063 11 + 425601 tagctgggtgt s panTro4.chr1 225041519 11 + 228333871 tagctgggtgt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226410408 11 - 229942017 tagctgggtgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293843 11 - 143122389 tagctgggtgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17001916 11 - 229590362 tagctgggTgt i rheMac3.chr1 C 0 I 400 s macFas5.chr1 223765678 11 - 227556264 tagctgggtgt i macFas5.chr1 I 299 C 0 s papAnu2.chr1 16815915 11 - 220367699 tagctgggtgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82613797 6 + 85787240 -----tggtgt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14294348 11 - 49578535 tagctgggtgt i calJac3.chr19 C 0 C 0 e mm10.chr1 178853582 1862 + 195471971 I e canFam3.chr7 36436319 0 + 80974532 C a score=113299.000000 s hg38.chr1_KI270759v1_alt 285074 55 + 425601 ggttgtatgtgtgcgtcatcctagctacttgggaggctgaagtgggaggatcact s panTro4.chr1 225041530 55 + 228333871 ggttgtatgtgtgcgtcatcccagctacttgggaggctgaagtgggagtatcact i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226410419 55 - 229942017 ggttgtatgtgcgtgtcgtcccagctacttgggaggctgaagtgggaggatcact i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293854 55 - 143122389 ggttgtatgtgtgtgtcgccccagctactcaggaggctgaagtgggaggatcact i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223765689 55 - 227556264 ggttgtatgcgcgtgtcgtcccagctacttgggaggctgaagtggggggatcact i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16815926 55 - 220367699 ggttgtatgcacatgtcatcccagctacttgggaggctgaagtgggaggatcact i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82613803 42 + 85787240 ggttgtatgcgcgtgtcatcccagctacttggga-------------ggatcact i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14294359 55 - 49578535 ggttgtgtgtgcgtgtcatcccagctacttgggaggctgatgcaggaggattgct i calJac3.chr19 C 0 C 0 e mm10.chr1 178853582 1862 + 195471971 I e canFam3.chr7 36436319 0 + 80974532 C e rheMac3.chr1 17001927 400 - 229590362 I a score=184112.000000 s hg38.chr1_KI270759v1_alt 285129 90 + 425601 tgagcctgggaggcagcggttgcagtgagcagagctcacaccagtgcactccagcctgggtgacagtgagatcctgtctcaaaaaaaa--ga s panTro4.chr1 225041585 85 + 228333871 tgagcctgggaggcagtggttgcagtgagcagagctcacaccagtgcactccagcctgggtgacagtgagatcctgtctcaaaa-------a i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226410474 86 - 229942017 tgagcctgggaggcagaggttgcagtgagcagaactcacgccagtgcactccagcctgggtgacagtgagaccctgtctcaaaaa------a i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293909 84 - 143122389 tgagcctgggaggcagaggttgcagtgagcagagctcacaccagtgcactcgagcctgggtgacagtgagaccctgtctcaaaa-------- i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223765744 88 - 227556264 tgagcctgggaggcagaggttgcagtaagcagagctcacagcagtgcactccagcctgggtgatagtgagaccctgtctcaaaaaaaa---- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16815981 88 - 220367699 tgagcctgggaggcagaggttgcagtaagcagagctcacagcagtgcactccagcctgggtgacagtgagaccctgtatcaaaaaaaa---- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82613845 90 + 85787240 tgagcctgggaggcagaggttgcagtaagcagagctcatagcagtgcactccagcctgggtgacagtgagaccctgtcttaaaaaaaaaa-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14294414 88 - 49578535 tgagcctgggaggcagaggttgcagtgagcagagatcacaccagtgcaccccagcctgggtgacagcaagaccctgtctcaaaaaaaa---- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36436319 44 + 80974532 CGGGCCTGAGACA----------AGTGTGCACGG----------------------TGGGTGACACT----TTCTCTCTC------------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178853582 1862 + 195471971 I e rheMac3.chr1 17001927 400 - 229590362 I a score=998051.000000 s hg38.chr1_KI270759v1_alt 285219 342 + 425601 aaaaaaaaaaaaaaaaTTGGATGACGTTGGGCAAGTGTGGTGTCTGTCTCAGCTCTGTGAGTGTAGGATGATTCAGAATCTAATGATTAGGTCTCCTGAACTCCTAGGTCAAACGTGGTTAAAGGGAGATCCAGGGAAGCAGTGAGGAATGGGCTCTTAC--AACACTGTCATGGACATGG----------------------------------------GTTCAATATGTTGGCaattattatttattgaggacgtactttgttttaagtgcttaggataattatttgcttaatagtcacgtaagtccttcaagataggcattattatcgccattttactaatgaggaaactatgttaaaataatatattcctggtcacaca s panTro4.chr1 225041670 342 + 228333871 aaaaaaaaaaaaaaaaTTGGATGACGTTGGGCAAGTGTGGTGTCTGTCTCAGCTCTGTGAGTGTAGGATGATTCAGAATCTAATGATTAGGTCTCGTGAACTCCTAGGTCAAACGTGGTTAACGGGAGATCCAGGGAAGCAGTGAGGAATGGGCTCTTAC--AACACTGTCATGGACATGG----------------------------------------GTTCAATATGATGACaattattatttattgaggacgtactttgttttaagtgcttgggataattatttgcttaatagtcatgtaagtccttcaagataggcattattatcgccattttactaatgaggaaactatgttaaaataatagattcctggtcacaca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226410560 342 - 229942017 aaaaaaaaaaaaaaaaaTGGGCGACCTTGGGCAAGTGTGATGTCTGTCTCAGCTCTGTGAGTGTAGGCTGATTCAGAATCTAATGATTAGGTCTCCTGAACTCCTAGGTCAAAAGTGGTTAAAGGGAGATCCAGGGAAGCAGTGAGGAATGGGCTTTTAC--AACACTGTCATGGACGTGG----------------------------------------GTTCAATatgatggcaattattatttattgaggacgtactttgtttcaaatgcttaggataattgtttgcttgatagtcatgtaagtccttcaagataggcattattatcgccattttactaatgaggaaactatgttaaaataatatattcctggtcacgca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140293993 338 - 143122389 ----aaaaaaaaaaaaTTGGATGACCTCGGGCAAGTGTGGTGTCTGTCTCAGCCCTGTGAGTGTAGGGTGATTCAGAATCTAATGATTAGGTCTCCTGAACTCCTAGGTCAAAAGTGGTTCAAGGGAGATCCAGGGTGACGGTGAGGAATGGGCTCTTAC--AGCACTGTCATGGACGTGG----------------------------------------GTTCAATatgatggcaattattatttattgaggacgtactttgtttcaagtgcttagcataattatttgcttaacagtcatgtaagtccttcaagacaggcattattatcgccattttactaatgaggaaagtatgttaaaataatatattcatggtcacaca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17002327 341 - 229590362 AAAAAAAAAAAAAACATTGGATGACCTTGGGCAAGTGTGATGTCTGCCTCAGCTCGGTGAGTGTAGGATGGTTTGGAACCTAATGATTAGGTCTCTTGAACTCTTAGGTCAGAGGTGGTTAAAGGGAGATCCAGGGAAGCAGTGAGGAAT-GGCTCTTAT--GGCACTCTCATGGATGTGG----------------------------------------GTTCAATATGATGGTGATtattatttattgaggacatactttgtgccaagtgcttaggataattattggcttaatagtcatgtaagtccttcaagataggcgttattatctccatgttactatagaggaaactatgttaaaataatatattcatggtcgcaca i rheMac3.chr1 I 400 C 0 s macFas5.chr1 223765832 333 - 227556264 --------aaaaaaCATTGGATGACCTTGGGCAAGTGTGATGTCTGCCTCAGCTCGGTGAGTGTAGGATGGTTTGGAACCTAATGATTAGGTCTCTTGAACTCTTAGGTCAGAGGTGGTTAAAGGGAGATCCAGGGAAGCAGTGAGGAAT-GGCTCTTAT--GGCACTCTCATGGATGTGG----------------------------------------GTTCAATATGATGGTGATtattatttattgaggacatactttgtgccaagtgcttaggataattattggcttaatagtcatgtaagtccttcaagataggcgttattatctccatgttactatagaggaaactatgttaaaataatatattcatggtcgcaca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16816069 336 - 220367699 -----aaaaaaaaaaattggatgaccttgggcaagtgtgATGTCTGCCTCAGCTTGGTGAGTGTAGGATGGTTCAGAACCTAATGATTAGgtctcttgaactcctaggtCAGAGGTGGTTAAAGGGAGATCCAGGGAAGCAGTGAGGAAT-GGCTCTTAC--GGCACTCTCATGGATGTGG----------------------------------------GTTCAATATGATGgtgattattatttattgaggACATACTTTGTGCCAAGTGCTTAGGATAATTATTGGCTTAATAGTCATGTAAGTCCTTCAAGATAGGCGTTATTATCTCCATGTTACTATAGAGGAAActatgttaaaataatatattcatggTCGCACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82613935 341 + 85787240 aaaaaaaaaaaaaaaaTTGGATGACCTTGGGCAAGTGTGATGTCTGCCTCAGCTCGGTGAGTGTAGGATGGTTTGGAACCTAATGATTAGGTCTCTTGAACGCTTAGGTCAGAGGTGGTTAAAGGGAGATCCAGGGAAGCAGTGAGGAAT-GGCTCTTAC--AGCACTCTCATGGATGTGG----------------------------------------GTTCAATataatggtgattattatttatggagaacatactttgtgccaagtgcttaggataattattggcttaatagtcatgtaagtccttcaagataggcgttattatctccatgttactatagaggaaactatgttaaaataatatattcatggtcgcaca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14294502 371 - 49578535 ---------aaaaaaaTTGGATGACCTT-GGCAAGTATGGTGTCTGCCTCAGCCTTATGGGTGTATGATGATTCAGAATGTAGCGATTCGGTCTCCTGAGTTCCTAAGTCAAAGGTGGATAAAGGAAGA-CCTGGGAAGCAGTGAGGAATGGGCTTTCAC--AGCACTGTCACGGACACAGGTTCAATGTCATGGATGTCGGTTCAATGTCACAGATGCAAGTTCAATGTCATGGCagttattatttacagagaacatactttatgccaagtgcttaggataattatttgcttaatagtcatgtaagtccttcaagataggggttctgatcgccattttactaatgaggaaactatgttaaaataatatattcatggtcacaca i calJac3.chr19 C 0 C 0 s canFam3.chr7 36436363 281 + 80974532 ---------------------------TGGGCC----TATTGTGTGGCATA---------------AACGGGTAAGGATCTAGTGACGAGGTCTCTGGAACCCCTAGGTCCAAGGTGGTTGAAGGGATTGCCCA---------GAGCCATGACCCTGTGCTAGGCACCGCTGTGAACATGG----------------------------------------CTTCAGTGTGATGGGAGTCATTAT------GGAACCTACTTTATGCCAAGTGAGTAGCACAGTTATTTGCCTAATAAACACGTGaatccttccagataatggttattatcccc--tttactggtgagagaactgtgttcaaataatatgttgatgctcacatg i canFam3.chr7 C 0 C 0 e mm10.chr1 178853582 1862 + 195471971 I a score=6257659.000000 s hg38.chr1_KI270759v1_alt 285561 1849 + 425601 gcgaccaagagtcaggatctgtctgccttcagagttcatagtctttccaGTAGCCTC--------------AGTAA---------------------------------------------------------------------------------AAAGTaataatagctaata----tttactgagcacttactatgtcactgacattgtggaaagggatgttatgggcatttgctcttttaatgatcacagtaactctgctaggccag-tactgttattatggccgatttatagatgtgg-acagaggagg---ttaaa-cactcgtgcatggacacatactgatcaac-gtacagccagcactcaaacccaggccgcc-----tgtctccagagcctgtgcccccaagctctaggccatGTGCCCTGTAAGTCGCAGATGGGACGCTCTGACAGCGAGTGTCACTGAGGTCGGAGTGGGTCATC---AGGCATGCCTCAGAATCCCATTCCCCACTTCATTCACACCTGAGAACGCCTGTCTCT--GGAT----------------GCATCTTTACACCAGC---TCATCCATTTAAAATCAGTTCCCT-AATACAACAAGCTGAG-GA-TGAGGCCCCTTCTAACTAGGCCACCGTCAGAGTCCCAATCCTTTCTGACAGACCAGCCCCCGACATGTGTCTGTCTCCATCCTTGCAGCC-TGGCCAGCC----CTGTCCCACGCCTGCTAATTGGT-G-GGGGGACCTGGCCCCCCAAGCCTG-CC-GGCCATTAGCAG----------TGCCTCACGGGGAAGGGCTTTCTTCCTTGGTTTCAACTCCCTCCCTCCAGCGCGCAGTCCCTTGCCGGGCTTGC---CTGG---TGACAGACTCGTGTTGATGAAGACCTTTAGGGAATTTCCT--TCCCCCTCCGCTCCCCGAAGCGCTTCT---TAGAGCACATCTCATTACCGGGCTCCATTCTCCCGTCCTGCACATGCTCCCTCACACTTAGCTTTATTGTGCCACCACTTGTCACCTTTCCCGGCCCGGTTTTTAATAATGCAAATCT-TCCCTCTCTGATGGCATCGCTGCTCATTATTTGCTGTCTGGCACCACGGGAGCTCACCCAGCGGCACCTCGGAGAAGCCAGCCGCCCAGGGTGCAGGCGCAGGCCCCACT------------------------GCCCGCCC--------------------------------CAGTCTCCTGAGAGATGGCTCCGCTCTGGCTATGACCCAAGATGCTCA-tggagggaagagcagtccagggccagggcccttccaccttcgc---caggcaggtgcctttgagcaagtca----------------------------atctctgcagcctcaaaa---------------------taggaaagatggtaat-aattattataataatatcc-ccttaacaaagcagttatggggcaaccaaatggaagtaagatacgagaaaagtctgtataaactgtaagatttgtaaaacttgtaaagaagttgtGGTGGTGTTGCTGATGG--------------ATGAT----TGATTGATTTGGTCAACACGGAGCAGTCG---------CTGCCCCAAAGTAGGCCTG---GAGGGCACCCCAGCCCCCT--CATCTGCCCTCCCAC--CCCCAAACTCAGCATGGAATCATATGGCTTTGGACTTTCTCCAGGTGGATAAAGCCCCCTGATCTTTGAACATGTCATGCAGGATTATTATTGTGTGTTTTGTTTGGGCAAAGAAATTTAAGCCAATTTACTTTTGTTCTGTAACTCATAACTGAACTGTGCTCAGAGTCTCTGGGGTCCTTTCAGGCATGGGTCTGTGGTTCTGTAATGGTAACTATGGGTTGATGGAGCAATGGCTTTGTAAAATA-TGTTTAAAAGCTCCCTCTG--AATTGAGGGATCACAGCCTCCTTAGTTGTCCCCTGGATTTCCTGGCATTGGAGTTATGTAAGACCTCCATGATCATTGCCATCTGGAATATGACT-CTTTGGTACCCCAAAAAACTTCTGGAGTCTTTCAGTCATATGGAATCAAAAAGATCTTCCTTTGGAAGAAGCAATTTTAG s panTro4.chr1 225042012 1849 + 228333871 gcgaccgagagtcaggatctgtctgccttcaaagttcatggtctttccaGTAGCCTC--------------AGTAA---------------------------------------------------------------------------------AAAGTaataatagctaata----tttactgagcactcactatgtcactgacattgtggaaagggatgttatgggcatttgctcttttaatgatcacagtaactctgctgggccag-tactgttattatggccgatttatagatgtgg-acagaggagg---ttaaa-cgctcgtgcatggacacatactgatcaac-gtacagccagcactcaaacccaggccgcc-----tgtctctagagcctgtgcccccaagctctaggccatGTGCCCTGTAAGTCGCAGATGGGACGCTCTGACAGCGTGTGTCACTGAGATCGGAGTGGGTCATC---AGGCATGCCTCAGAATCCCGTTCCCCACTTCATTCACACCTGAGAACGCCTGTCTCT--GGAT----------------GCATCTTTACACCAGC---TCATCCATTTAAAGTAAGTTCCCT-ACTACAACAAGCTGAG-GA-TGAGGCCTCTTCTAACTAGGCCACTGTCAGAGTCCCAATCCTTTCTGACAGACCAGCCCCTGATATGTGTCTGTCTCCATCCTTGCAGCC-TGGCCAGCC----CTGTCCCACACCTGCTAATTGGT-G-GGGGGACCTGGCCCCCCAAGCCTG-CC-GGCCATTAGCAG----------TGCCTCACGGGGAAGGGCTTTCTTCCTTGGTTTCAACTCCCTCCCTCCAGCGCGCAGTCCCTTGCCGGGCTTGC---CTGG---TGACAGACGCGTGTTGATGAAGACCTTTAGGGAATTTCCT--TCCCCCTCCGCTCCCCGAAGCGCTTCT---TGGACTACATCTCATTACCGGGCTCCATTCTCCCGTCCTGCACATGCTCCCtcacacttagctttattgtgccaccacttgtcacctttcccggccccgtttttaataatgtaaatct-tccctctctgatggcatcgctgctcattatttgctgtctGGCACCACGGGAGCTCACCCAGCGGCACCTCGGAGAAGCCAGCCGCCCAGGGTGCAGGCGCAGGCCCCGCT------------------------GCCCGCCC--------------------------------CAGTCTCCTGAGAGATGGCTCCGCTCTGGCTATGACCCAAGATGCTCA-tggagggaagagcggtccagggccagggcccttccaccttcgc---caggcaggtgcctttgagcaagtca----------------------------atctctgcagcctcaaaa---------------------taggaaagatgataat-aattattataataatatcc-ccttaacaaagcagttatggggcaaccaaatggaagtaagatatgagaaaagtctgtataaactgtaagatttgtaaaacttgtaaagaagttgtGGTGGTGTTGCTGATGG--------------ATGAT----TGATTGATTTGGTCAACACGGAGCAGTCG---------CTGCCCCAAAGTAGGCCTG---GAGGGCACCCCAGCCCCCT--CATCTGCCCTCCCAC--CCCCAAACTCAGCATGGAATCATATGGCTTTGGACTTTCTCCAGGTGGATAAAGCCCCCTGATCTTTGAACATGTCATGCAGGATTATTATTGTGTGTTTTGTTTGGGCAAAGAAATTTAAGCCAATTTACTTTTGTTCTGTAACTCATAACTGAACTGTGCTCAGAATCTCTGGGGTCCTTTCAGGCATGGGTCTGTGGTTCTGTAATGGTAACTGTGGGTTGATGGAGCAATGGCTTTGTAAAATA-TGTTTAAAAGCTCCCTCTG--AATTGAGGGATCACGGCCTCCTTAGTTGTCCCCTGGATTTCCTGGCATTGGAGTTATGTAAGACCTCCATGATCACTGCCATCTGGAATATGACT-CTTTGGTCCCCCAAAAAACTTCTGGAGTCTTTCAGTCATATGGAATCAAAAAGATCTTCCTTTGGAAGAAGCAATTTTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226410902 1848 - 229942017 gtgaccaagagccagggtctgtctgccttcaaagttcgtggtctttccaGTAGCCAA--------------AGTAA---------------------------------------------------------------------------------AAAGTaataatagctaata----tttactgagcactcactatgccactgacattgtgg-aagggatgttatgggcatttgctcttttaatgatcacagtaactctgctaggccag-tgctgttattatggccaatttatagatgtgc-acagaggagg---ttaga-tgctcgtgcatggacacatactgatcaac-gtacagccagccctcaaacccaggccgcc-----tgtctccagagcctgtgcccccaagctccaggccatGTGCCCTGTAAGTCGCAGATGGGACGCTCTGACAGCGTGTGTCACTGAGATCGGAGTGGGCCATC---AGGCATGCCTCAGAATCCCATTTCCCACTTCATTCACACCTGAGAACGCCTGTCTCT--GGAT----------------GCATCTTTACACCAGC---TCATCCATTTAAAATAAGTTCCCT-AATACAACAAGCTAAG-GA-TGGGGCCTCTTCTAACTAGGCCACCGTCAGAGTCCCAATCCTTTCTGACAGACCAGCCCCTGATATGTGTCTGTCTCCATCCTTGCAGCC-TGCCCAGCC----CTGTCCCACACCTGCTAATTGGT-G-GGGGGACCTGGCCCCCCAAGCCTG-CT-GGCCATTAGCAG----------TGCCTCACGGGGAAGGGCTTTCTTCCTTGGTTTCAGCTCCCTCCCTCCAGCGCACAGTCCCTCGCTGGGCTTGC---CTGG---TGACAGACGCGTGTTGATGAAGACCTTTAGGGAATTTTCT--TCCCCCTCCGCTCCCCGAAGCACTTCT---TAGAGTACATCTCATTACCGGGCTCCATTCTTCCGTCCTGCACATGCTCCCTCACACTTAGCTTTATTGTGCCACCACTTGTCACCTTTCCCGGCCCGGTTTTTAATAATGTAAATCT-TCCCCCTCTGATGGCATCGCTGCTCATTATTTACTGTCTGGCACCACGGGAGCTCACCCAGTGGCACCTCTGAGAAGCCAGCCGCCCAGGGTGCAGACGCAGGCCCCACT------------------------GCCTGCCC--------------------------------CGGTCTCCTGAGAGATGGCTCTGCTCTGGCTACGACCCAAGATGCTCA-tggagggaagagcagtccagggccagggcccttccaccttcgc---caggcaggtgcctttgagcaagtca----------------------------atctctgtagcctcaaaa---------------------taggaaagatggtaat-aatcattataataatatcc-ccttaacaaagcagttacggggcaaccaaatggaagtaagatatgagaaaggtctgtataaactgtaagatttgtaaaacctgtaaagaagttgtGGTGGTGTTGCTGATGG--------------ATGAT----TGATTGATGTGGTCAACACGGAGCAGTCG---------CTGCCCCAAAGTAGGCCCG---GAGAGCACCCCAGCCCCCT--CATCTGCCCTCCCAC--CCCCAAACTCAGCATGGAATCATATGGCTTTGGACTTTCTCCAGGTGAATAAAGCCCCCTGATCTTTGAACATGTCATGCAGGATTATTACTGTGTGTTTTGTTTGGGCAAAGAAATTTAAGCCAATTTACTTTTGTTCTGTAACTCATAACTGAACTGTGCTCAGAATCTCTGGGGTCCTTTCAGGCGTGGGTCTGTGGTTCTGTAATGGTAACTATGGGTTGATGGAGCAATGGCTTTGTAAAATA-TGTTTAAAAGCTCCCTCTG--AATTGAGGGATCACAGCCTTCTTAGTTGTCCCCTGGATTTCCTGGCATTGGTGTTATGTAAGACCTCCATGATCATTGCCATCTGGAATATGACT-CTTTGGTCCCCCAAAAACCTTCTGGAGTCTTTCAATCATATGGAATCAAAAAGATCTTCCTTTGGAAGAAGCAATTTTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140294331 1842 - 143122389 gcgaccaagagccaggatctgtctgccttcaaagttcgcggtctttccaGTAGCCTC--------------AGTAA---------------------------------------------------------------------------------AAAGTaataagagctaata----tttactgagcactcactatgtcagtgacattctggaaagggatgttatgggcatttgctcttttaatgatcacagtaactctgctaggccag-tactgttattatggccgatttatagatgtgg-acagaggagg---ttaaa-cgctcgtgcatggacacatactgatcaac-gtacagccagcactcaaacccaggccgcc-----tgtctccagagcctgtgcccccaagctccaggccatGTGCCCTGTAAGTCGCAGATGGGACGCTCTGACAGCCTGTGTCACTGAGATTGGAGTGGGTCATC---AGGCGTGCCTCAGAATCCCATTCCCCACTTCATTCACACCTGAGAACGCCTGTTTCT--GGAT----------------GAATCTTTACACCAGC---TCATCCATTTGAAATAAGTTCCCT-AATACAGCAAGCTAAG-GA-TGGGGCCTCTCCTAACGAGGCCACTGTCAGAGTCCCAATCCTTTCTGACAGACCAGCCCCTGATATGTGTCTGTCTCCATCCTTGCAGCC-TGGCCAGCCCTGTCTGTCCCACGCCTGCTAATTGGT---GGGGGACCTGGCCCCCCAAGCCTG-CC-AGCCATTAGCAG----------TGCCTCGTGGGGAAGGGCTTTCTTCCTTGGTTTCAGCTCCCTCCCTCCAGCGCGCGGTCC---------CTTGC---CTGG---TGACAGACGCATGTTGATGAAGACCTTTAGGGAATCTCCT--TCCCCCTCTGCTCCCTGAAGCACTTCTTTATTGAGTACATCTCATTACCGGGTCCCATTTTCCCGTCCTGCACATGCTCCCTCACACTTGGCTTTATTGCGCCACCACTTGTCACCTTTCCCAGCCCGGTTTTTAATCATGTAAATCT-TCCCTCTCTGAGGGCATCGCTGCTCATTATTTGCTGTCTGGCACCACGGGAGCTCACCCAGTGGCACCTCTGAGAAGCCAGCCGCCCACGGTGCAGGCGCAGGCCCCACT------------------------GCCCGCCC--------------------------------CAGTCTCCTGAGAGATGGCTCCGCTCTGGCTACGACCCAAGATGCTCA-tggagggaagagcagtccagggtcagggcccttccaccttcac---caggcaggtgcctttgagcaagtca----------------------------atctctgtagcctcaaaa---------------------taggaaagatggtaataaatcattataataatatcc-ccttaacaaagcagtcatgggacaaccaaatggaagtaagatatgagaaaggtctgtataaactgtgagatttgtaaaacttgtaaagAAGTTGTGGTGGTGTTGCTGATGG--------------ATTAT----TGATTGATTTGGTCAACACGGAGCAGTCG---------CTGCCCCAAAGTAGGCCTG---GAGGGCACCGCAGCCCCCT--CATCTGCCCTCCCAC--CCCCAAACTCAGCATGGAATCATATGGCTTTGGACTTTCTGCAGGTGAATAAAGCCCCCTGATCTTTGAACATGTCATGCAGGATTATTATTGTATGTTTTGTTTGGGCAAAGAAATTTAAGCCAATTTACTTTTGTTCTGTAACT-----CTGAACTGTGCTCAGAATCTCTGGGGTCCTTTCAGGTGAGGGTCTGTGGTTCTGTAATGGTAGCTATGGGTTGATGGAGCAATGGCTCTGTAAAATA-TGTTTAAAAGCTCCCTCTG--AATTGAGGGATCACAGCCTTCTTAGTTGTCCCCTGGATTTCCTGGCATTGGAGTTATATAAGACCTCCATGATCATGGCCATCTGGAATATGACT-CTTTGGTCTCCCAAAAAACTTCTGGAGTCTTTCAATCATATGGAATCAAAAAGATCTTCCTTTAGAAGAAGCAATTTTAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17002668 1841 - 229590362 gcgaccaagagccaggatctctctgccttcaaagttcgtagtctttcTGGTAGCCTC--------------AGTAA---------------------------------------------------------------------------------AGAGTaataatagctaata----tttattgagcactcactatgtcactggcattgtggaaaggcatgttatgggcatttgcttttttaatgatcacagtcatcctgctaggccag-tactgttattatggccgatttatagatgtgg-acagaggagg---ttaaa-cactcgtgcatgggcacgtaccaatcaat-gtacagccagcactcaaacccaggccgcc-----tgtccccagagcctgtgcccccaggctccaggccatGTGCCATGTAAGTCGCAAATGGGATGCTCTGACAGCGTGTGTCACTGAGATCGGAGTGGGTCATC---AGGCAGGCCTCAGAATCCCATATCCCACTTCATTCACACCTGAGAAAGCCTGTCTCT--GGAC----------------GCATCTTTACACCCGC---TCATCCATTTAAAATAAGTTCACT-AATACCACAAGCTAAG-GA-TGGGGCCTCTTCTAACTAGGCCACTGTCAGAGTCCCAATCCTTTCTGACAGACCAGCCCCTGATATGTGTCTGTCTCCATCCTTGCAGCC-TGGCCAACC----CTGTCCCATGCATGCTAATTGGT-G-GGGGGACCTGGCCCCCTAAGCCTG-CC-GACCATTAGCAG----------TGCCTCACAGGGAAGGGCTTTCTTCCTTGGTTTTGACTCCCTCCCTCCAGCACGCAGTCCCTTGCTGGGCTTGC---CTGG---TGACAGACGCATGTTGATGAAGAGCTTTAGGGAATTTCCT--TCCCCCTCCGCTCCCCGAAGCACTTCTTTATTGAGTACATCTCATTACCGGGCTCCATTCTCCCATCCTGCACATGCTCCCtcacacttagctttattgtgccaccacttgtcacctttcccggcccagtttttaataatgtaaatct-tccctctctgatggcatcgctgctcattatttgctgtctggcaccaaGGGGGCTCACCCAGTGGCACCTCTGAGAAGCCAGCCGCCCAGGGTGCAGGCCCAGGCCCCACT------------------------GCCCGCCC--------------------------------CAGTCTCCTGAGAGGTGGCTCCACTCTGGCTACTAGCCAAGATGCTCA-tggagggaagagcagtccggggccagggc-------cctttgc---caggcagttggctttgagcaaacca----------------------------atctctgtagcctcaaaa---------------------taggaaacatggtaat-aatcattataatcatattt-ccttaacaaagcagttatgggg-aaccaaatggaagtaagatatgagaaaggtctttataaactgtaagatttgtaaaacttgtaaagaagttgtGGTGGTGTTGCTGATGG--------------ATGAT----TGATTGATTTGGTCAACACGGAGCAGTCG---------CTGCCTCAAAGTAGACTTG---GAGGGCACCTCAGCCCCCT--CATCTTCCCCCCCTC--CCCCAAACTCAGAGTGGAATCCTGTGGTTCTGGACTTTCTCCAGGTGAATAAAGCCCCTTGATCTTTGAATGTGTCATGCAGGATTATTATTCTGTGTTTTGTTTGGGCAAAGAAATTTAAGCCAATTTACTTTTGTTCTGTAACTCATAACCGAACAGTGCTCAGAATCTCTGGGGTCCTT----GCATGCGTCTGTGATTCTGTAATAGTAACTATGGGTTGATGGAGCAATGGCTTTGTAAAATA-CGTTTAAAAGCTCTCTCTG--AATTGAGGGATCACAGCCTTCTTGGTTGTCCCCTGTATTTCCTGGCATTGGAGTTATGTGAGACCTCCACGATCATTGCCATCTGGAATATGACTCCTTTGGTCTCCCAAAAAAGTCCTGGAACCTTTCAATCATATGGAATCAAAAAGATCTTCCGTTGGAAGAAGTAATTTTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223766165 1841 - 227556264 gcaaccaagagccaggatctctctgccttcaaagttcgtggtctttcTGGTAGCCTC--------------AGTAA---------------------------------------------------------------------------------AGAGTaataatagctaata----tttattgagcactcactatgtcactggcattgtggaaaggcatgttatgggcatttgctcttttaatgatcacagtcatcctgctaggccag-tactgttattatggccgatttatagatgtgg-acagaggagg---ttaaa-cactcgtgcatgggcacgtaccaatcaat-gtacagccagcactcaaacccaggccgcc-----tgtccccagagcctgtgcccccaggctccaggccatGTGCCATGTAAGTCGCAAATGGGACGCTCTGACAGCGTGTGTCACTGAGATCGGAGTGGGTCATC---AGGCAGGCCTCAGAATCCCATATCCCACTTCATTCACACCTGAGAACGCCTGTCTCT--GGAC----------------GCATCTTTACACCCGC---TCATCCATTTAAAATAAGTTCACT-AATACCACAAGCTAAG-GA-TGGGGCCTCTTCTAACTAGGCCACTGTCAGAGTCCCAATCCTTTCTGACAGACCAGCCCCTGATATGTGTCTGTCTCCATCCTTGCAGCC-TGGCCAACC----CTGTCCCATGCATGCTAATTGGT-G-GGGGGACCTGGCCCCCTAAGCCTG-CC-GACCATTAGCAG----------TGCCTCACAGGGAAGGGCTTTCTTCCTTGGTTTTGACTCCCTCCCTCTAGCACGCAGTCCCTTGCTGGGCTTGC---CTGG---TGACAGACGCGTGTTGATGAAGAGCTTTAGGGAATTTCCT--TCCCCCTCCGCTCCCCGAAGCACTTCTTTATTGAGTACATCTCATTACCGGGCTCCATTCTCCCATCCTGCACATGCTCCCTCACACTTAGCTTTATTGTGCCACCACTTGTCACCTTTCCCGGCCCAGTTTTTAATAATGTAAATCT-TCCCTCTCTGATGGCATCGCTGCTCATTATTTGCTGTCTGGCACCAAGGGGGCTCACCCAGTGGCACCTCTGAGAAGCCAGCCGCCCAGGGTGCAGGCCCAGGCCCCACT------------------------GCCCGCCC--------------------------------CAGTCTCCTGAGAGGTGGCTCCACTCTGGCTACTAGCCAAGATGCTCA-tggagggaagagcagtccggggccagggc-------cctttgc---caggcagttggctttgagcaaacca----------------------------atctctgtagcttcaaaa---------------------taggaaacatggtaat-aatcattataatcatattt-ccttaacaaagcagttatgggg-aaccaaatggaagtaagatatgagaaaggtctttataaactgtaagatttgtaaaacttgtaaagaagttgtGGTGGTGTTGCTGATGG--------------ATGAT----TGATTGATTTGGTCAACACGGAGCAGTCG---------CTGCCTCAAAGTAGACTTG---GAGGGCACCTCAGCCCCCT--CATCTTCCCCCCCTC--CCCCAAACTCAGAGTGGAATCCTGTGGTTCTGGACTTTCTCCAGGTGAATAAAGCCCCTTGATCTTTGAATGTGTCATGCAGGATTATTATTCTGTGTTTTGTTTGGGCAAAGAAATTTAAGCCAATTTACTTTTGTTCTGTAACTCATAACCGAACAGCGCTTAGAATCTCTGGGGTCCTT----GCATGCGTCTGTGATTCTGTAATGGTAACTATGGGTTGATGGAGCAATGGCTTTGTAAAATA-CGTTTAAAAGCTCTCTCTG--AATTGAGGGATCACAGCCTTCTTGGTTGTCCCCTGTATTTCCTGGCATTGGAGTTATGTGAGACCTCCACGATCATTGCCATCTGGAATATGACTCCTTTGGTCTCCCAAAAAAGTCCTGGAACCTTTCAATCATATGGAATCAAAAAGATCTTCCTTTGGAAGAAGTAATTTTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16816405 1837 - 220367699 GCGACCAAGAGCCAGGATCTCTCTGCCTTCAAAGTTCGTGGTCTTTCCGGTAGCCTC--------------AGTAA---------------------------------------------------------------------------------Agagtaataatagctaata----tttattgagcactcactatGTCACTGGCATTGTGGAAAGGGATGTTATGGGCATTTGCTCTTTTAATGATCACAGTCATCCTGCTAGGCCAG-TACTGTTATTATGGCCGATTTATAGATGTGG-ACAGAGGAGG---TTAAA-CGCTCGTGCATGGGCACGCACCAATCAAT-GTACAGCCAGCACTCAAACCCAGGCCGCC-----TGTCCCCAGAGCCTGTGCCCCCAGGCTCCAGGCCATGTGCCATGTAAGTCGCAAATGGGACGCTCTGACAGCGTGTGTCACTGAGATTGGAGTGGGTCATC---AGGCAGGCCTCAGAATCCCATATCCCACTTCATTCGCACCTGAGAACGCCTGTCTCT--GGAC----------------GCATCTTTACACCCGC---TCATCCATTTAAAATAAGTTCACT-AATACCACAAGCTAAG-GA-TGGGGCCTCTTCTAACTAGGCCACTGTCAGAGTCCCAATCCTTTCTGACAGACCAGCCCCTGATATGTGTCTGTCTCCATCCTTGCAGCC-TGGCCAACC----CTGTCCCATGCATGCTAATTGGT-G-GGGGGACCTGGCCCCC-AAGCCTG-CC-GACCATTAGCAG----------TGCCTCACAGGGAAGGGCTTTCTTCCTTGCTTTCAACTCCCTCCCTCCAGCACGCAGTCCCTTGCTGGGCTTGC---CTGG---TGACAGACGCGTGTTGATGAAGAGCTTTAGGGAATTTCCT--TCCCCCTCCGCTCCCCGAAGCACTTCTTTATTGAGTATATCTCATTACCGGGCTCCATTCTCCCATCCTGCACATGCTC---CACACTTAGCTTTATTGTGCCACCACTTGTCACCTTTCCCAGCCCAGTTTTTAATAATGTAAATCT-TCCCTCTCTGATGGCATCGCTGCTCATTATTTGCTGTCTGGCACCATGGGGGCTCACCCAGTGGCACCTCTGAGAAGCCAGCCGCCCAGAGTGCAGGCCCAGGCCCCACT------------------------GCCCACCC--------------------------------TAGTCTCCTGAGAGGTGGCTCCACTCTGGCTACTAGCCAAGATGCTCA-TGGAGGGAAGAGCAGTCCGGGGCCAGGGC-------CCTTCGC---CAGGCAGTTGGCTTTCAGCAAACCA----------------------------ATCTCTGTAGCCTCAAAA---------------------TAGGAAACATGGTAAT-AATCATTATAATCATATTT-CCTTAACAAAGCAGTTGTGGGG-AACCAAATGGAAGTAAGATTTGAGAAAGGTCTTTATAAACTGTAAGATCTGTAAAACTTGTAAAGAAGTTGTGGTGGTGTTGCTGATGG--------------ATGAT----TGATTGATTTGGTCAACACGGAGCAGTCG---------CTGCCTCAAAGTAGACTTG---GAGGGCACCTCAGCCCCCt--catcttccctccctc--ccccaaactCAGAGTGGAATCCTGTGGCTCTGGACTTTCTCCAGGCGAATAAAGCCCCCTGATCTTTGAATGTGTCATGCAGGATTAttattctgtgttttgtttgggCAAAGAAATTTAAGCCAATTTACTTTTGTTCTGTAACTCATAACCAAACAGTGCTTAGAATCTCTGGGGTCCTT----GCATGCGTCTGTGATTCTGTAATGGTAACTATGGGTTGATGGAGCAATGGCTTTGTAAAATA-CGTTTAAAAGCTCCCTCTG--AATTGAGGGATCACAGCCTTCTTGGTTGTCCCCTGTATTTCCTGGCATTGGAGTTATGTGAGACCTCCACAATCATTGCCATCTGGAATATGACTCCTTTGATCTCTCAAAAAAGTTCTGGAACCTTTCAATCATATGGATTCAAAAAGATCTTCCTTTGGAAGAAGTAATTTTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82614276 1839 + 85787240 gcaaccaagagccaggatctctctgccttcaaagttcgtggtctttccaGTAGCCTC--------------AGGAA---------------------------------------------------------------------------------AGAGTaataatagctaata----tttattgagcactcactatgtcactggcattgtggaaagggatgttat-ggtatttgctcttttaatgatcacagtaaccctgctaggccag-tactgttattatggccgatttatagatgtgg-acagaggagg---ttaaa-tgctcgtgcatggacacacaccaatcaat-gtccagccagcactcaaacccaggccgcc-----tgtgcccagagcctgtgcccCCAGGCTCCAGGCCATGTGCCATGTAAGTCGCAAATGGGACGCTCTGACAGCGTGTGTCACTGAGATCGGAGTGGGTCATC---AGGTAGGCCTCAGAATCCCATACCCCACTTCATTCACACCCGAGAACGCCTGTCTCT--GGAT----------------GCATCTTTACACCCGC---TCATCCATTTAAAGTAAGTTCACT-AATACCACAAGCTAAG-GA-TGGGGCCTCTTCTAACTAGGCCACTGTCAGAGTCCCAATCCTTTCTGACAGACCAGCCCCTGATATGTGTCTGTCTCCATCCTTGCAGCC-TGGCCAACC----CTGTCCCATGCATGCTAATTGGT-G-GGGGGACCTGGCCCCCTAAGCCTG-CC-GACCATTAGCAG----------TGCCTCACGGGGAAGGGCTTTCTTTCTTGGTTTTGACTCCCTCCCTCCAGCACGCAGTCCCTTGCTGGGCTTGC---CTGG---TGACAGACGCGTGTTGATGAAGAGCTTTAGGGAATTTCCT--TCCCCCTCCGCTCCCCGAAGCACTTCTTTATTGAGTACATCTCATTACCGGGCTCCATTCTCCCATCCTGCACATGCTCCCTCACACTTAGCTTTATTGTGCCACCACTTGTCACCTTTCCCGGCCCAGTTTTTAATAATGTAAATCT-TCCCTCTCTGATGGCATCGCTGCTCATTATTTGCTGTCTGGCACCAAGGGGGCTCACCCAGTGGCACCTCTGAGAAGCCAGCCGCCCAGGGTGCAGGCCCAGGCCCCACT------------------------GCCCGCCC--------------------------------CAGTCTCCTGAGAGGTGGCTCCACTCTGGCTACTAGCCAAGATGCTCA-TGGAGGGAAGAGCAGTCCGGGGCCAGGGC-------CCTTCGC---CAGGCAGTTGGCTTTGAGCAAACCA----------------------------ATCTCTGTAGCCTCAAAA---------------------TAGGAAACATGGTAAT-AATCATTAAAATC-TATTT-CCTTAACAAAGCAGTTATGGGG-AACCAAATGGAAGGAAGATATGAGAAAGGTCTTTATAAACTGTAAGATTTGTAGAACTTGTAAAGAAGTTGTGGTGGTGTTGCTGATGG--------------ATGAT----TGATTGATTTGGTCAACACGGAGCAGTCG---------CTGCCTCAAAGTAGACTTG---GAGGGCACCTCAGCCCCCT--CATCTTCCCTCCCTC--CCCCAAACTCAGAGTGGAATCCTGTGGCTCTGGACTTTCTCCAGGTGAATAAAGCCCCTTGATCTTTGAATGTGTCATGCAGGATTATTATTCTGTGTTTTGTTTGGGCAAAGAAATTTAAACCAATTTACTTTTGTTCTGTAACTCATAACCGAACAGTGCTGAGAATCTCTGGGGTCCTT----GCATGCATCTGTGATTCTGTAATGGTAACTATGGGTTGATGGAGCAATGGCTTTGTAAAATA-CGTTTAAAAGCTCCCTCTG--AATTGAGGGATCACAGCCTTCTTGGTTGTCCCCTGTATTTCCTGGCATTGGAGTTATGTGAGACCGCCACGATCATTGCCGTCTGGAATATGACTCCTTTGGTCTCCCAAAAAAGTTCTGGAACCTTTCAATCATATGGAATCAAAAAGATCTTCCTTTGGAAGAAGTAATTTTAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14294873 1836 - 49578535 gcaaccaaggaccaggatctgtctgacttccaagttcgtggtctttccaGTAGCCTC--------------AATGA-----------------------------------------------------------------------TAGTG---GTAAAGTCataatcgctgata----ttgactgagcactctcgatgtcggtggctttgttg-aagggatgttatgggcgtttgctctttgaatgatcacagtaaccctgctaggacagttactgttattacggccgatttatagatgtgg-acatcggagg---tgaaa-ccctcgtgcatggacacacaccgatgaac-ttacagccagcacgcaaa-ccaggcag-c-----tgtctccagagcctgtacccccaagctccaggccatGTGCTCTGTGAGTCGTAGAT-AGATGCTGTGACAGCTTGCGTCACTGAGATCGGAGTGGGTCATC---AGGCATGCCTCAGGACCCTACACCCCGCTGCATTCACACCTGAGCACGCCTGCCTCT--GGAT----------------GCGTCTTTCCGCCAGC---TTATCCATTTAAAAGAGATTCCCT-GATACAACAAGCTAAT-GA-TGGGGCCTCTTCTAGCTAGGCGGCTGTCAGAGTCCCAGGGCTTTCTGACAGACCAGCTCCTGCTATGTGTCTGTCTGCATCCTTGAAGCC-TGGCCAGCT----CTGTCCCACGCCTGCTAATTGATCG-GGGGCATCTGGCCCCTCAAGGCTGCCC-GGCCATTAGCCA----------TACCTCACGGGGAAGGGTTTTCTTCCTTGGTTTCACCTCCCTCCCTCCAGCGCGCAGTCCCTTGCTGGGCTTGC---CTGG---TGACAGACGTGTGTTGATGAAGAGCTTTAGGGAATGTGCT--TCCCCCTCTGCTCCCCGGAGCACTTCTTTATCGAGTGCATGTCATTACC-GGCTCCGTTCT-CCGCCCTGCACATGCTCCCTCGcacttagctctattgtgccaccacttgtcaccttttccaggccggtttttaataatggaaatct-tccctctctgatggcgttgctgctcattatttgctgtctGGCACCATGGGAGCTCACCCACTGGCACCTCTGAGGAGCCAGCCGCCCAGGGTGCAAGTGTGGGCCCTGGT------------------------ACCTGCCC--------------------------------CAGTCTCCTGAGTGGTGGCTCCGCTCTGGCTGTGACTCaagacactca-tggagaaaggagcagtcc-gggttatcgcccttccgcctttgc---cagccagttggcttagagcaagcca----------------------------atctctacagcctcgaaa---------------------taggaaagaggttaat-aatcactacagtaatattt-ccttagcaaagccgttatgagggaaccaaatggaagaaagatatgagaaaggtctttataaactgtaaaatctgtaaaacttgtaaggaagttgtGGTGGTGTTGCTGATGG--------------ATGAT----CGAT-----TGGTCAACAGGGAGCAGTTG---------CTGCCCCAAAGGAGGTCTG---GAGTGCACCCCAG-CCCCT--CATCTGCCCTCCCAC--CCCCAAACTCAGCATGGAGTCATA------TGGACTTCCTCCAGGTGAATATAACCCCCTCGTCTTTGAATATGTCATGCAGGATTATTATTATGTGTTTTGTTTTGGCAAAGAAATTTAAGCCAATTTACTTTTGTTCTGTAACTCACAACTGAACTGCGCTCAGAGTCTCTGGGACCCATTCAGGCGTGGGTCTGTGGTTCTATAACG---ACTTTGGGCTGTTGGAACAATGGCTTTGTAAAATA-TGTTTAAAAGCTCCCTCTG--AACTGATGGATCACAGCCTTCTTGGTTGGCCCCTGGA-TTCCTGGCACTGGAGTTATC----ATTGCCCATATCATTGTCACCTGGAATGTGACTCCTTTGGTTTCCTAAAAAACTTCTGGAACCTTTCAATCATATGGAATGAAAAAGATCTTACTTTGGAAAAAGTCATTTTAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178855444 1738 + 195471971 GCTACCAAGAGCCAGAGTCTGTATGACTTGAAGGTTCATGGTCTCTTCAGTCGGCCC--------------AGTTA-------------------------------------------------------------CCACA----GTAGTGACTGTGAGGCAGTAGCAGCTAATG----------------CCACCATGT----------------GTGTACTCTGTAGTCCCTGGCTCCAT-----ACCTCAG-AACCC------------TACGGCTCTTGTTACCAGTTTATACAC-TGG-ACACCAAAGAGCTTCAAT-CTCTTGTCCACAGACGCGCATCAGCGAAT-G---ATCTAGATCCCAACCCTGGGAGACCTTCTTTGTCTCCGCAGCCTGTG-CTCCAGGCCCCTAGCTGTACATCCCATAAACCACAGGGAGGAAAC--TGACGGTGACCAACCTTGACACTGGAGTGATTCTCCT-AGGGAAAAAGCCAGCATCCCACCACCCACTCCG-TCAGGCCCAAAGATGTCTGTCTTA--GGGTGTCTGTCTGCCTTAGAGTGTTTTGACACCAGC---TCATCCATTTAAAATAAGTTTCCTGAACACAATGAGCTAAG-GGTTGGGGTGACTTCTAAATAGGCTACTGTCAGAGTTCCAGTCCTTCCTGACAGACTGGCCCCTGAGATGTGTCTGCCTCACCCTCGGCTGCT-TGGCCTGCT----CTCTTGCTAGTCTCCTAATTGGT-GTGAGGGACTCTGTTCCCCAG--CTG-CC-AGCCATTAGCAG----------GGTTTCGCAGGGAAGGGCTTTTTCT--------------CCCCACTGTGTTTTGCAGTCCCTGGCTAGGCTTGC---CTGG---TGACAGCTGCTTGCTGATGCCGGGCTTTATGGAATCTTCTAGGCCCCCTCCACTCCCCGAAGCCCTCCTTTATTGAGTACATCTCATTAGCAGGCTCCATTTTCTGGTCTCTCACATGCTCCCTCACACTTAGCTTCATTGTGCCTCTGCTTGTCACCTTCGCCAGCCTGGCTTTTAATAATGTAAATCT---CCCCTCTGATGGCATGGCTGCTCGTTACTTGCTGTCTGGCGCCACACAAACTTACCTAATGGCGCCTCTGAAAAGCTGA--GGCTTTAGTGGAGAAACTGGCCC-GCT--------------------------CCTTCC--------------------------------CCACATCCTCAAGGGTACTGCAGCTCTGTATTTGTCCCA-----------GAAAAGAGGATCAGGTCAAGGCCACAGC-----------------CAGG-------CTTTGGGCAAGACG--------------------------------CTGGAGTCCCAGGACCAGAAATCCCAGTGCGGAGCTAAGGAGCATGGTAGT-TACAAGGACAGTGGTAATT-CTTTGGCAGAGCAGCTGTGGGGAAGGCACATGGGAAGGAGATA----AGAGCCTTCGACAAACATCGAGGTCTGTACAACTTGTCAAGAAGTCATAGCAAGGGTGCCGGTA------------------CT----AAACTGCTCTTGTCAACACAGA----------------CTGTCCTCAGG-AAGCCTGAGTGAGTACATCTCAGCC--------TCTACCCTCCAAATGTCTCACACCAAATATGGACTCT----------------------GTGGACCAAGCCCCATACTCTCAGGACACTTCCTGAAGGATGAC----------------------ACTAGATTCAATCCAA------CAGGTTATGTAACCCACAGCTGAACGGTGCTTCCAGTCTCCGAGGTCTCTTTAGGTGTGATTCTGCAATCCTGTAATGGCCATTAGGCTTTGATGGAGCAATGCCGTTGTGAGATATTGTTTAAAAGGTCTAACTG------TAGGAAGTGCAGTTGTCTCACTTCTCCCCTGCATTTCTTAGCGTTGGAGTTACTAGAAGCCTACAAGCCTTACACCGACCAACAGGCGCCTCC--TGGTCCTCTACCATTCTCCTTGAACCCTTCAGTCTCATGAAACCATAGGGGTTTGCCTTCAGGAAAAGCCATTTCAG i mm10.chr1 I 1862 I 530 s canFam3.chr7 36436644 1961 + 80974532 gctagtaagagctggcatc----tgacctcaaatttcatggtctttctgGTAAACTCACACCCTCAACAATAGTAATTCTTTAAGtttatattatagatttttaaaatactaaaaattttatcatattaatataatatcacataatataattattatGAAGTACTGACAGCCAGTATTTatttattgaatgctcattgtgtagcaggcacacttg-tacgggtgctgcagacacctgctctttttatgatcatgacagccctgctcggaacg-taccgttactaggacacatttctagatgcagtgtgcaggagg---ttaggtcacttgtgcatg--------tcagtgagcagtacggccagagatcaaacccaggcagcc-----tgtgtgcagagcgcatgctcccagcctcagggctgcactCCTCA-GGGTCGTTCGGAGGACGTGCTGATAGCGGGCGTCGGTAACCTTGGGCATGCTCATCTCCAGGGACACCTCAGAAGCCCATATCCCACTTCA------CCCAAGAATGACTGTATCTTGGGGC----------------ATATTTTTGGACCAGCTCATCATCCATTTGAAATCAGTTCCCA-AATGCAATGAGCTAAGAGA-TGGGGCCTCTTCTACATAAGCG---GTTAGAATT-CAGCCCTTGCTACCAGCACAGCCTCTGAAGCACGCCTGTCTCCATGCTCCCAGCCTTGGCCAGCT----C--TCCCCCGCCTGCTAATTGGT-GTGAGGGGCCTCACTCCCAGAGGCTG-CCTGGCTGTGAGCAGCAGTGCCTCCTGCCTCTCTGGGGAGGGACTCCTCTCCTGGCTGAGCTTCCCCC----------------------TGGGCTTGAGGGCTGAGGCTGACAGATGCACA--AGCCAGGAGCTTCAGGGAATGTCCC--TCCTCCTCCA-TCCCCCAAGCACTTCCTTAGTGAGGACATCTCATTACTGGGCTCCATTTTCTGGTCTTGCACATGTTCCCTC-----------------------ACTTGTCACCTTTCCCAGCCTGGCTTTTAATAATGTAAATCTCCCCCTCTCTGATGGCATCACTGCTCATTATTTGCTGTCTGGCACCAGATGGGCTCACCCACTGGCACCTCTTAGAAGCCAGCCACCCAGCTCAGGGACGGCACCCTCACTCGAAGGCAGTTGAGCTCTGGCTCAGCCCGGCCAGGTGCAAGCCCTGCTGGGTTTGGCGGGAGGACAGTCTCCTT--CTGTGGCTCCATCC-------GACCCTAGACGCTCAGTGGAGGGTGAGCTGGTTAGGCGCTGCTGCCCTTTCGCCTTTTCTTGtagccagctggctttgaacaagtcacttaagtgcccagaacccagttacttaagtctccttggccataaag---------------------taagggtggtggtaac-agtaatgatattaacattcacctaaataaagctgttgctggg-aatcaaatggaaataagatatgagaaaatcctctgtaaa-tataaaatttataaaatttgtaaagaagttaCAGCCATGGTGCAGATGGCAGGTGACAAGTGAGTGATAAAGTGATTGATTTTGTTGACACAGAGTAGACAGTCCCCCCCCCCCCCCAGAATCAGCTAG-------GCGTCTCAGCCTCCTGGCATTAGCCCTCCTAC-ACCCCAAACTCAGCACTAGATCCTACTGCTCTGGACCTTCTCCAGGGGAA--GAGCCCTGTGAACCTTGGCTAGATCATTTAGGATCACTGTTGTG------GTTTGATCAAAGAAATTCAGTCCCAGTTAGCTTTGTCCCGTAAATGACAACCGAGCTGCAGTTAG-----------------------TGGATCTGCTGTTCTGTAATG-TAACTATGCTTTGATGGAAC-ACAACTCTGTCAGCTA-TGTTTAGAGCCTCCCCCTGTAAACTTGGGGAGCACAGC----------------------TCCGGGGATTAGGATCATTCAAGAATTCCAACACCATCGCTATATGACACATGATTCCTGCTGCCTCCTAAGAAACTTCTGGAGCCTTTGAGTTGCATGAAATCATCAAGATCTTCCTGCAGAAAGAGCAGTTTCAG i canFam3.chr7 C 0 C 0 a score=4095.000000 s hg38.chr1_KI270759v1_alt 287410 1 + 425601 A s panTro4.chr1 225043861 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226412750 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140296173 1 - 143122389 A i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17004509 1 - 229590362 A i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223768006 1 - 227556264 A i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16818242 1 - 220367699 a i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82616115 1 + 85787240 A i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14296709 1 - 49578535 A i calJac3.chr19 C 0 C 0 s canFam3.chr7 36438605 1 + 80974532 A i canFam3.chr7 C 0 C 0 e mm10.chr1 178857182 530 + 195471971 I a score=228541.000000 s hg38.chr1_KI270759v1_alt 287411 91 + 425601 TCACTGATGGAAATTTTACCAGAAAAGTATTCAAATCTTTTCCTTTT------------------ATAAAACCTGGG-------TTTGTtttttgttttttaa----ttatactttcagt s panTro4.chr1 225043862 98 + 228333871 TCACTGATGGAAATTTTACCAGAAAAGTATTCAAATCTTTTCCTTTT------------------ATAAAACCTGGGTTTGTTTTTTGTtttttgttttttaa----ttatactttcagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226412751 97 - 229942017 CCACTGATAGAAATTTTACCAGAAAAGTATTCAAA-CTTTTCCTTTT------------------ATAAAACCTGGGTTTGTTTTTTGTtttttgttttttaa----ttatactttcagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140296174 90 - 143122389 TCACTGATAGAAATTTTACCAGAAAAGTATTCAAATCTTTTCCTTTT------------------ATAAAACCTGGG--------TTTTttttttttttttaa----ttatactttcagt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17004510 91 - 229590362 TCATTTATACAAATTTTACCATAAAAATATTCATACCTTTTCCTTTT------------------ATAAAATCTGTG-------TTTTTTAAAAttattatta----ttatactttaagt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223768007 91 - 227556264 TCATTTATACAAATTTTACCATAAAAATATTCATACCTTTTCCTTTT------------------ATAAAATCTGTG-------TTTTTTAAAAttattatta----ttatactttaagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16818243 91 - 220367699 tcatttatacaaattttaccataaaaatattcataccttttcctttt------------------ataaaatctgtg-------ttttttaaaattattatta----ttatactttaagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82616116 91 + 85787240 TCATTTATACAAATTTTACCATAAAAATATTCATACCTTTTCCTTAT------------------ATAAAATCTGTG-------TTTTTAAAAAttattatta----ttatactttaagt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14296710 91 - 49578535 TCATTTATAGAAATTCTGCCAGAAAAATATTCAAACCTCTTCCTTTT------------------GTAAAACCtatt-------tttttaaaaaatatatata----ttatactttaagt i calJac3.chr19 C 0 C 0 s mm10.chr1 178857712 87 + 195471971 TCACTTTTAGAAATGTTATCAGGGAAATATATAAATTATCATCTTGT------------------GTAAAACCTGAT-------TTT----AATTTACTTTAA----TGTTATTGTCAGT i mm10.chr1 I 530 I 2466 s canFam3.chr7 36438606 113 + 80974532 TTCTTTCTAAACATTTTAACAGGGAAGTATTTAAACTTTCTCCTTTTCaaaaaaaataaaataaaataaaCtttctc-------cttttctttttttttttaaggttttatttatttatt i canFam3.chr7 C 0 C 0 a score=41022.000000 s hg38.chr1_KI270759v1_alt 287502 11 + 425601 tctgggataca s panTro4.chr1 225043960 11 + 228333871 tctgggataca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226412848 11 - 229942017 tctgggataca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140296264 11 - 143122389 tctgggataca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17004601 11 - 229590362 tctgggataca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223768098 11 - 227556264 tctgggataca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16818334 11 - 220367699 tctgggataca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82616207 11 + 85787240 tctgggataca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14296801 11 - 49578535 tctgggataca i calJac3.chr19 C 0 C 0 s canFam3.chr7 36438719 11 + 80974532 catgagagaca i canFam3.chr7 C 0 I 2271 e mm10.chr1 178857799 2466 + 195471971 I a score=323832.000000 s hg38.chr1_KI270759v1_alt 287513 114 + 425601 tgtatagaatgtgcaggtttg-ttacataggtatacacatgccatggtggtttgctgcacccatcaacccgtcatctacattaggtatttctcctaatgctatccctcccctagc s panTro4.chr1 225043971 114 + 228333871 tgtatagaatgtgcaggtttg-ttacataggtatacacatgccatggtggtttgctgcacccatcaacccatcatctacattaggtatttctcctaatgctatccctcccctagc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226412859 114 - 229942017 tgtatagaacgtgcaggtttg-ttacataggtatacacatgccatggtggtttgctgcacccatcaacccgtcatctacattaggtatttcttctaatgctatccctcccctagc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140296275 114 - 143122389 tgtatagaacgtgcaggtttg-ttacataggtatacacatgccatggtggtttgctgcacccatcaacccatcatctacattaggtatttctcctaatgctatccctcccctagc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17004612 114 - 229590362 tgtgcagaacgtgcaagtttg-ttacataggtatacacatgtcatggtggttagttgcacccattgacccgtcatctacattaggtatttcttataatgctatccctcccctagc i rheMac3.chr1 C 0 I 7440 s macFas5.chr1 223768109 114 - 227556264 tgtgcagaacgtgcaagtttg-ttacataggtatacacatgtcatggtggttagttgcacccatcgacccgtcatctacattaggtatttcttataatgctatccctcccctagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16818345 114 - 220367699 tgtgcagaatgtgcaagtttg-ttacataggtatacacatgtcaTGGTGGTTAGTTGCACCCATcgacccatcatctacattaggtatttcttataatgttatccctcccctagc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82616218 114 + 85787240 tgtgcagaatgtgcaagtttg-ttacataggtatacacatgtcatggtggttagttgcacccatcgacccgtcatctacattaggtatttcttataatgctatccctcccctagc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14296812 109 - 49578535 tgtgcagaatgtacaggttttcttatataggtacacacatgccacggtggtttgctgcacccatc-acccatcatctacattagagattctccc----gct-tccttcccctatc i calJac3.chr19 C 0 C 0 e mm10.chr1 178857799 2466 + 195471971 I e canFam3.chr7 36438730 2271 + 80974532 I a score=968033.000000 s hg38.chr1_KI270759v1_alt 287627 406 + 425601 tccccagcccccaacaggccccggtgtatgatgttcccctccctgtgtccatgtattctcattgttcaactcccacttatgagtgagaacatgcagtgtttgg-ttttctattcctgtattagtttgctgagaatgatggtttcctgcttcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttctttattctgtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaacagtgccacaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagat s panTro4.chr1 225044085 406 + 228333871 tccccagcccccaacaggccccggtgtatgatgttcccctccctgtgtccatgtattctcattgttcaactcccacttatgagtgagaacatgcagtgtttgg-ttttctattcctgtattagtttgctgagaatgatggtttctagcttcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttctttattctgtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaacagtgccacaataaacatacgtgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226412973 406 - 229942017 cccccagcccccaacaggccctggtgtatgatgttcccctccctgtgtccatgtattctcattgttcaactcccacttatgagtgagaacatgcggtgtttgg-ttttctattcctgtattagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccatggtgtatatgtgccacattttctttattctgtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaacagtgccacagtaaacatacgtgtgcatgtgtctttatagtagaatgaattataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagat i ponAbe2.chr1 C 0 I 115 s nomLeu3.chr5 140296389 405 - 143122389 cccccagcccccaacaggccctggtgtgtgatgttcccctccctgtgtccatgtattctcattgttcaactcccacttatgagtgagaacatgcagtg-ttgg-ttttctattcctgtattagtttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccacggtgtatatgtgccacattttctttattctgtctaccattgatgggcatttgggttggttccaagtctttgctattgtgaacagtgccacaataaacatacgtgtgcatgtgtctttatagtagaatgatttatattccttggggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagat i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223768223 406 - 227556264 ctcccaccccccgaaaggccccagtgtgtgatgttcacctccctgtgtctatgtgttctcattgttcaactcccacttatgagtgagaacatgcagtgtttgg-ttttctgttcatgtgttagtttgctgagaacgatggtttccagcttcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcatagtgttccatggtgtatatgtgccacattttctttatccagtctatcattgatggccatttgggttggttccaagtttttgctattgtgaacagtgctgcagtaaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctggat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16818459 406 - 220367699 ctcccaccccccgaaaggccccggtgtgtgatgttcacctccctgtgtctatgtgtgctcattgttcaactcccacttatgagtgagaacatgcagtgtttgg-ttttctgttcatgtgttagtttgctgagaacgatggtttccagcttcatccatgtccctgcaaacgacatgaactcatccttttttatggctgcatagtgttccatggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtatttgctattgtgaacagtgctgcagtaaacatacatgtgcatgtgtctttatagtagaatgatttataatcctttgggtatatacccagtaatgggattgctgggtcaaatggtatttctggttctagat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82616332 406 + 85787240 ctcccaccccccgaaaggccccggtgtgtgatgttcacctccctgtgtctatgtgttctcattgttcaactcccacttatgagtgagaacatgcagtgtttgg-ttttctgttcatgtgttagtttgctgagaacgatggtttccagattcatccatgtccctgcaaaggacatgaactcatccttttttatgactgcatagtgttccatggtgtatatgtgccacattttctttatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaacagtgctgcagtaaacatacgtgtgcatgtgtcttcatagtagaatgatttataatcctttgggtgtatacccagtaatgggattgctgggtcaaatggtatttctggttctggat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14296921 394 - 49578535 --------cccca-----ccccggtgtgtgatgttcccctccctgtgtccatgtgttctcattgttcaactcccacttataagtgagaacatgtggtgtttggtttttctgttcttgtgtcagtttgctgagaatgatggtttccagcttcatgcatatccctgcaaaggacatttactcatccttttttatggctgcatagtattccatgatgcatatgtgccacattttctttatccagcctatcactgatgggcatttgggttggttccaagtctttgctattgtgaatagtactgcaataaacatacatgtgcatgtgtctttatagcagagtgatttataatcctttgggtatataccccataatgggaatgctgggtcaaatggtatttctggttctagac i calJac3.chr19 C 0 C 0 e mm10.chr1 178857799 2466 + 195471971 I e canFam3.chr7 36438730 2271 + 80974532 I e rheMac3.chr1 17004726 7440 - 229590362 I a score=3415278.000000 s hg38.chr1_KI270759v1_alt 288033 1552 + 425601 ccttgaggaatc-accacactgtcttccacaatggttgaactaatttacactcccaccaaaagtgtaaaagcattgctatttctccacatcctctccagcatctgttgtttcctcactttttaatgatcgccattctaactggtgtgaga-tggtatctcattgtggtgttgctttgcatttccctaatgaccagtgatgatgagctttttttcatatgtttgttggccacataaatgttttcttttgagaagtgtctgttcatatccttctcccgctttttgatgggtttgtttttttcttgtaaatttgtttaagttctttgtagattctggatattagccctatgtcagatgaatagattgcaaaaattttcttccattctgtaggttgcctgttcactctgat--gatagtttcttttgctgtgcagaagctctt-agtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtc-tttgcccatgcctatgtcctgaatggtattgcctagatttttgtctagggtgttttatggttttaggtcttacatttaagtctttaatccaacttgagttac-tttttgtataaggtataaggaaggggtccggtttcagttttctgcatatggctagccagttttcccaacaccatttattaaatagggaatcctttccccattgcttg-ttttgtcaggtttgtcaaagaccagattattgtagatgtgtggtgttatttctgaggcctctgttctgttacatttgtctatatctctgttttggtaccagtaccatgctgttttggttagtgtagccttgtagtataatttgaggtcaggtagcgtgatgcctccagctttgttctttttgcttaggattgtcttggctatatgggctc-ttttttggttccaaatgaaatttaaagtag-ttttttctaattctatgaagaaagtcaatggtagcttggtgggaatagcattgaatctataaattattttgggcagtgtggccatattcacgatattgtttcttcctttccataagcatagaatgtttttccatttgtttgtgtcctctcttattttcttgagcagtggtttgtatttccccttgaagaggtccttcacatcccttgtaagttgtattcctaggtattttattctctttgtagcaattgtgaatgggagttcactcatgatttggctctc----tgtctattactggtgtataggaaggcttgtgatttttgcacaatgattttgtatcctgtgactttcctgaatttgcttatcagcttaaggagattttgggctgagacgacggggttttctaaatatagaatcatgttatctgcaaac--aggcaatttgacttactctcttcctatttggataccctttatttctttctcttgcctgatcgccctggccagaacttccaataccatattgaataggagtggtgagagagggcattcttgtattgtgctggttttcaaagggaatgcttccagcttttgcctattcagta s panTro4.chr1 225044491 1545 + 228333871 ccttgaggaatc-accacactgtcttccacaatggttgaactaatttacactcccaccaaaagtgtaaaagcattgctatttctccacatcctctccagcatctgttgtttcctcactttttaatgatcgctattctaactggtgtgaga-tggtatctcattgtggtgttgctttgcatttccctaatgaccagtgatgatgagctttttttcatatgttt-ttggccacataaatgttttcttttgagaagtgtctgttcatatccttctcccgctttttgatgggtttgttttttccttgtaaatttgtttaagttctttgtagattctggatattagccttatgtcagatgaatagattgcaaaaattttcttccattctgtaggttgcctgttcactctgat--gatagtttcttttgctgtgcagaagctctt-agtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtc-tttgcccttgcctatgtcctgaatggtattgcctagatttttgtctagggtgttttatggttttaggtcttacatttaagtctttaatccaacttgagttac-tttttgtataaggtataaggaaggggtccagtttcagttttctgcatatggctagccagttttcccaacaccatttattaaatagggaatcctttccccattgcttg-ttttgtcaggtttgtcaaagatcagattattgtagatgtgtggtgttatttctgaggcctctgttctgttacatttgtctatatctctgttttggtaccagtaccatgctgttttggttagtgtagccttgtagtataatttgaggtcaggtagcgtgatgcctccagctttgttctttttgcttaggattgtcttggctatatgggctc-ttttttggttccaaatgaaatttaaagtaa-ttttttctaattctatgaagaaagtcaatggtagcttggtgggaatagcattgaatctataaattattttgggcagtgtggccatattcacgatattgattcttcctatccataagcatagaatgtttttccatttgtttgtgtc--ctcttattttcttgagcagtggtttgtatttccccttgaagaggtccttcccatcccttgtaagttgtattcctaggtattttattctctttgtagcaattgtgaatgggagttcactcatgatttggctc--------tctattactggtgtataggaaggcttgtgatttttgcacaatgattttgtatcctgtgactttcctgaatttgcttatcagcttaaggagattttgggctgagatgacggggttttctaaatatagaatcatgttatctgcaaac--aggcaatttgacatactctcttcctatttggataccctttatttctttctcttgcctgatcgccctggccagaacttccaatactatattgaataggagtggtgacagagggcattcttgtattgtgccggttttcaaagggaatgcttccagcttttgcctattcagta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226413494 1556 - 229942017 ccttgaggaatcaaccacactgtctttcacaatgg-tgaactaatttacgctcccaccaaaagtgtaaaagcattgctatttctccacatcctctccagcatctgttgtttcctcactttttaatgatcgccattctaactggcatgaga-tagtatctcattgtggtgttgctttgcatttccctaatgaccagtgatgatgagcttcttttcatatgtttgttggccgcataaatgttttcttttgagaagtgtctgttcatatcctttgcccgctttttgatgggtttgtttttttcttgtaaatttgtttaagttctttgtagattctggatattagccctatgtcagatggctagattgcaaaaattttcttccattctgtaggttgcctgttcactctgattagatagtttcttttgctgtgcagaagctctt-agtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagtcatgaaatc-tttgcccttggctatgtcctgaatggtattgcctagatttttgtctagggtgttttatggttttaggtcttacatttaagtctttaatccaacttgagttac-tttttgtataaggtgtaaggaaggggtctggtttcagttttctgcatatggctagccagttttcccagcaccatttattaaatagggaatcccttccccattgcttg-ttttgtcaggtttgtcaaagatcagatagttgtagatatgcggcattatttctgagggctctcttctgttacattggtctatatatctgttttggtaccagtaccatgctgttttggttagtgtagccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttctttttgcttaggattgtcttggctatatgggctc-ttttttggttccaaatgaaatttaaagtag-ttttttctaattctatgaagaaagtcaatggtagcttggtgggaatagcattgaatctataaattattttaggcagtgtggccatattcacgatattgattcttcctatccataagcatagaatgtttttccatttgtttgtgtcctctcttatttccttgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttgtattcctaggtattttattctctttgtagcaattgtgaatgggaattcactcatgatttggctctc----tgtctattattggtgtataggaaggcttgtgatttttgcacaatgattttatatgctgtgactttcctgaatttgcttatcagcttaaggagattttgggctgagacgatggggttttctaaatatagaatcatgttatctgcaaacaaaggcaatttgacatactctcttcctatttggataccctttatttctttctcttgcctgattgccctggccagaacttctaatactatgttgaataggagtggtgagagaggacattcttgtattgtgccggttttcaatgggaatgcttccagcttttgcccattcagta i ponAbe2.chr1 I 115 C 0 s nomLeu3.chr5 140296794 1553 - 143122389 ccttgaggaatc-gccacactgtcttccacaatggttgaactaatttacactcccaccaaaagtgtaaaagcattgctatttctccacatcctctccagcatctgttgtttcctcacttttcaatgatcaccattctaactggcgtgaga-tagtatctcattgtggttttgctttgcatttccctaatgaccagtgatgatgagctttttttcatatgtttgttggccgcataaatgttttcttttgagaagtgtctgttcatatcctttgcccactttttgatgagtttgtttttttcttgcaaatttgtttaagttctttgtagattctggatattagccctatgtcagatggatagattgcaaaaattttcttccattctgtaggttgcctgttcactccaat--gacagtttcttttgctgtgcagaagctctt-agtttagttagatcccatttgtcgattttggcttttgttgccattgcttttggtgttttagtcatgaagtcttttgcccatgcctatgtcctgaatggtattgcctagatttttgtctagggtgttttatggttttaggtcttacatttaagtctttaatccaacttgagttaa-tttttgtataaggcataaggaaggggtccggtttccgttttctgcatatggctagccagttttcccaacaccatttattaaatagggaatcctttccccattgcttg-ttttgtcaggtttgtcaaagatcagattgttgtaaatgtgtggtgttatttctgaggcctctgttctgttccattggtctatatatctgttttggtaccagtaccatgctgttttggttagtgtagccttgtagtatagtttgaagtcaggtagcgtgatgcctccagctttgttctttttgcttaggattgtcttggctatatgggctc-ttttttggttccaaatgaaatttaaagtag-ttttttctatttctgtgaagaaagtcaatggtagcttggtgggaatagcattgaatctataaattactttgggcagtgtggccatattcacgatattgattcttcctatccataaacatagaatgtttttccatttgtttgtgtcctctcttatttccttgagcaggggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcttaggtattttattctctttgtagcagttgtgaatgggagttcactcatgatttggctc------tgtctattattggtgtataggaaggcttgtgatttttgcacaatgattttgtatcctgtgactttcctgaatttgcttatcagcttaaggaggttttgggctgagacgatggggttttctaaatgtagaatcatggtatctgcaaacagaggcaatttgacaaactctcttcctatttggataccctttatttctttctcttgcctgattgccctggccagaacttccaatactatgttgaataggagtggtgagagagggcattcttgtcttgtgccggttttcaaagggaatgcttccagcttttgcccattcagta i nomLeu3.chr5 C 0 M 100 s macFas5.chr1 223768629 1553 - 227556264 ccttgaggaatc-accacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagcattcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgattgccattctaactggcatgaga-tggtatctcattgtggttttgatttgcatttctctaatgaccagtgatgatgagctttttttc--atgtttgttgcccacataaatgttttcttttgagaagtgtctgtttgtgtcctttgcccactttttgatggg-ctgtttttttcttgtaattttgtttaagttctttgtagattctggatattagccctttgtcagatggatagattgcaaaaattttctcccattctgtaggttgcctgttcactctgat--gatagtttcttttgttctgcagaagctcttcagttttattagatctcacttatcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtc-tttgaccatgcctatgtcctgaatggtattgcctagattgtcttcttgggt-ttttatggttttgggtcttacgtttaagtcttaaatccatcttgagttaa-tttttgtataagatgtaaggaaggagtccagtttcagttttctgcatgtggctagccagttttcccaacaacatttattaaatagggaatcctttccccatttcttgtttttgtcaggtttgtcaaagattagatggttgtagatgtgtggtgttatttctgaggcctctgttctgttccactggtctttatatctgttttggtatcagtaccatgctgttttggttactgtagccttgtagtatggtttgaagtcaggtagcatgatgcctccagctttgttctttttgcttaggattgtcttggctatacaggctc-ttttttggttccatatgaaatttaaggtagtttttttctaattctgtgaagaaagtcaacagtagcttgatgagaatagcattgaatctgtaaattactttgggcagtatggccattttcacgatattgattcttcctacccatgaacatagaatgtttttccatttgtttgtgtcctttcttactttgttgagcagtggtttgtagttctccttgaaggggtccttcacatcccttgtaagttgtattcctaggtattttattctctttgtagcaattgtgaatgggagttcactcatgatttggctctc----tgtttgttattggtgtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagctttggggctgagatgatgggattttctaaatatacaatcatgtcatctgcaaacagagacaatttgacttcctcttttcctatttgaataccctttatttctttctcttgcctaattgccctggccagaacttccaacactatattgaagaggagtggtgagagagggcatccttgtcttgtgcctgttttcaaagggaatgcttccagattttgcccattcagta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16818865 1546 - 220367699 ccttgaggaatt-gccacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagcattcctatttctccacatcctctccagcatctgttgtttcctgactttttaatgatcgccattctaactggcatgaga-tggtatcttattgtggttttgatttccatttctctaatgaccagtgatgatgagctttttttc--atgtttgttgcccacataaatattttcttttgagaagtgtctgtttgtgtcctttgcccactttttgatggg-ctgtttttttcttgtaattttgtttaagttctttatagattctggatattagccctttgtcagatggatagattgcaaaaattttctcccattctgtaggtcgcctgttcactctgat--gataatttcttttgttctgcagaagctcttcagttttaTTAGATCTCacttatcaattttggcttttgttgccattgcttttcgtgttttagtcatgaagtc-tttgaccatgtctatgtcctgaatggtattgcctagattttcttcttgggt-ttttatggttttaggtcttacgtttaagtcttaaatccatcttgagttaa-tttttatataagatgtaaggaaggagtccagtttcagttttctgcatatggctagccagttttcccaacaacatttattaaatagggaatcctttccccatttcttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggcctctgttctgttccattggtctatatatctgttttggtatcagtaccatgctgttttggttactgtagccttgtagtatggtttcaagtcaggtagcatgatgactccagctttgttctttttgcttaggattgttttggctatacaggctc-ttttttggttccatatgaaatttaaggtagtttttttctaattctgtgaagaaaatcaacaGTAGCTTGATgagaatagtattgaatctgtaaattactttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaacgtttttccatttgtttgtgtcctatcttatttccttgagcagtggtttgtagttctccttgaaggggtccttcacatcccttgtaagttatattcctaggcattttattctctttgtagcaattgtgaatgggagttcactcatgatttggctctc----tgtttgttattggtgtataagaatgcttgtgatttttgcacattgattttgtttcctgagactt-------gttgcttaccagcttaaggagattttggggtgagaggatggggttttctaaatatacaatcatgtcatctgcaaatagagacaatttgacttcctcttttcctatttgaatactctgtatttctttctcatgcctaattgccctggccagaacttccaacactatattgaagaggagtggtgagagagggcatccttgtcttgtgcctgttttcaaaggaaatgcttccagattttgtccattcagta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82616738 1554 + 85787240 ccttgaggaatc-accacactgtcttccacaatggttgaactaatttacactcccaccaacagtgtaaaagcattcctatgtctccacatcctctccagcatctgttgtttcctgactttttaatgattgccattctaactggcatgaga-tggtatctcattgtggttttgatttgcatttctctaatgaccaatgatgatgagctttttttc--atgtttgttgcccacataaatgttttcttttgagaagtgtgtgtttatgtcctttgcccactttttgatggg-ctgtttttttcttgtaattttgtttaagttctttgtagattctggatattagccctttgtcagatggatagattgaaaaaattttctcccattctgtaggttgcctgttcactctgat--gatagtttcttttgttctgcagaagctcttcagttttattagatctcacttatcaattttggcttttgttgccattgcttttggtgttttagtcatgaagtc-tttgaccatgcctgtgtcctgaatggtattgcctagattgtcttcttgggt-ttttatggttttaggtcttacgtttaagtcttaaatccatcttgagttaa-tttttgtataagatgtaaggaaggagtccagtttcagttttctgcatatggctagccagttttcccaacaacatttattaaatagggaatcctttccccattttttgtttttgtcaggtttgtcaaagatcagatggttgtagatgtgtggtgttatttctgaggcctctgttctgttccactggtctatatatctgttttgatatcaataccatgctgttttggttactgtagccttgtagtatggtttcaagtcaggtagcatgatgcctccagctttgttctttttgcttaggattgtcttggctatacaggctctttttttggttccatatgaaatttaaggtagtttttttctaattctgtgaagaaagtcaacactagtttgatgagaatagcattgaatctgtaaattactttgggcagtatggccattttcatgatattgattcttcctacccatgaacatagaatgtttttccatttgtttgtgtcctttcttactttgttgagcagtggtttgtagttctccttgaaggggtccttcacatcccttgtaagttgtattcctaggtattttattctctttgtagcaattgtgaatgggagttcactcatgatttggctgtc----tgtttgttattggtgtataagaatgcttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcgtatcagcttaaggagctttggggctgagatgataggattttctaaatatacaatcatgtcatctgcaaacagagacaatttgacttcctcttttcctatttgaataccctttatttctttctcttgcctaattgccctggccagaacttccaacactatattgaaggggagtggtgagagagggcatccttgtcttgtgcctgttttcaaagggaatgcttccagactttgcccattcagta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14297315 1521 - 49578535 tcttgaggaatc-acca---tgtcttccatgatggttgaactaatttacacgcccaccaacattgtaaaagtgttcctgtttctccacatcctctccagcatctgttgtctccagactttttaatgagcaccattctaactggcatgagattaccatctcattgtggttgtgacttgcatttctcgaatgaccag---tgatgagctttttttcatatg-ttgttggctgcataactgtcttcttatgagaagtgtctgttcataccctt---ctattttttgatggg--ttttttttccttgtaaatttgtgtaagttccttgtagaatgtggatattagccctttgtcagatgggtaggttgcaaagattttctcccatgctgtaggttgcctgttcactccgat--gatagtttcttttgctgtgcagaagctctttagtttaaatatatccctttagtgaattctggcttttgttgccattgcttttggtgtttcagtcat-aagtc-ttcgcccatgcctgtgtcctgagtgttactgcctaagttttcttatagggt-ttttatggtcttaggtcttacatttaagtctctaatccatcttgagttaattttttgtattaggtgtaaggaattggtcccatttccatcttctgcatatggctagcaagttttcccaacaccatgtattaaatagggaatcctttccccattgcttgtttttgtcaggtttgtcaaagatcagatggtgatagatgtgtggcgtaatttctgaggcctctgttctgttccattggcctacatatctgttttcgtaatagtaccatgctgtttttgttactgtagccttgtagtatagtttgaagtcaagtaccgtaatgcctccagctttgttctttttgcttaggattgtcttggctatacaggctc-ttttttggttccatatgaaatttag------tttcttttaattctgtgaagaaggtcagtggtagcttgatggggatagcactgaatctattaattact-------aaatggccattttcacaaaactgattcttcctgtccatgagcatggaatctttttccatttgtttgtgtcctctcttatttccttgaacaagggtttgtagt---ccttcaagagatccttcacatcccttgtaaattgtattcccaggtacttcattatctttgtagcagttgtgaatgggagttcacttgtgacttggctctccgtttgtctgttgttggtgtataggaatgcttgtgatttctgcacactgattttctatcctgatattgtgctgaaattgcttatcacattgaggagattttggactgagatgatgggattttctaactatacaatcaagtcatctgcaaataaagacaattcgacttcctctcttcctaattgaatacgctgtatttctttctcttgcctgattgccctggacagaacttccaatactatgtcaaataggagtaatgagagagggcctccttgtc-tgtac-----------agaaatgcttacagcttttgcccattcagta i calJac3.chr19 C 0 C 0 e mm10.chr1 178857799 2466 + 195471971 I e canFam3.chr7 36438730 2271 + 80974532 I e rheMac3.chr1 17004726 7440 - 229590362 I a score=525786.000000 s hg38.chr1_KI270759v1_alt 289585 332 + 425601 tgatattggctgtgggtttgtcataaatagctcttattattttgagaaacgtttcatcgatacctaatttactgagagtttttagcatgaaggggtgttgaattttgttgaaggccttttctgcatctattgagataatc--gtggtttttgtcattcgttctgtttatgtgatggcttacatttattgatttgcgtatgttgaaccagccttgcatcccaaagatgaagccgacctgatcgtggtggataagctttttgatgtgctgctggattcagtttgccagtattttattgaggattttcacatcgatgttcatcagggatattggcct s panTro4.chr1 225046036 334 + 228333871 tgatattggctatgggtttgtcataaatatctcttattattttgagaaacgttccatcgatacctaatttactgagagtttttagcatgaaggggtgttgaattttgttgaaggccttttctgcatctattgagataatcatgtggtttttgtcattcgttctgtttatgtgatggcttacatttattgatttgcgtatgttgaaccagccttgcatcccaaagatgaagccgacctgatcgtggtggataagctttttgatgtgctgctggattcagtttgccagtattttattgaggattttcgcatcgatgttcatcagggatattggcct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226415050 334 - 229942017 tgatattggctgtaggtttgtcataaatagttcttattattttgagaaacattccttcactacctagtttattgagagtttttagcatgaaggggtgttgaattttgttgaaggccttttctgcatctattgagataatcatgtggtttttgtcattggttctgtttatgagatggattacatttattgatttgcatatattgaaccagtcttgcatcccagagataaagccgacctgatcgtggtggataagctttttgatgtgctgctggattttgtttgtcagtattttattgaggatgtttgcatcgatgttcatcagggatattggcct i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223770182 312 - 227556264 tgatattggctgtggatttgtcataaacagctcttattatttagagaa-------------acctagtttattgagagttttt---------aggtgttaaattttatcgagggccttttctgcatctattgagataatcgtgtggtttttgtcattgattctctttatgccatgggttacatttattgatttgtgtatgttgaaccagcctggcatcccagggatgaagccaacctgatcatggtggataagctttttgatgtgctgctggattcagtttgccagtgttttattaaggatttttgcatcgatgttcatcagggatattggcct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16820411 321 - 220367699 tgatactggctgtgtatttgtcataaatagctcttattatttagagaa-------------acctagtttattgagagtttttagcatgaagaggtgttgaattttatcgaaggccttttctgcatctattgagataatcgtgtggtttttgtcattgattctctttatgtgatggattacatttattgatttgtgtatgttgaaccagcctggcatcccaggaatgaagccaagctgatcgtggtggataagctttttgatgtgctgctggattcagtttgccagtattttattaaggatttttgcatcgatgttcatcagggatatgggcct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82618292 312 + 85787240 tgatattggctgtggatttgtcataaatagcccttattatttagagaa-------------acctagtttattgagagttttt---------aggtgttaaattttatcgagggccttttctgcatctattgagataattgtgtggtttttgtcattgattctctttatgccatgggttacatttattgatttgtgtatgttgaaccagcctggcatcccagggatgaagccaacctgatcgtggtggataagctttttgatgtgctgctggattcagtttgccagtgttttattaaggatttttacattgatgttcatcagggatattggcct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14298836 334 - 49578535 tgatattggctgtaaatctgtcataaatagctcttattattttgggatatgttccattaacacctattttaatgagagtttttagcatgaaggcgtgttaaattttatcaaaggccttttctacatctattgagataatcatgtggttttagtccttggttctgtttatgtgatggattacatttatcaatttgcatatgttgaaccagccttgcatcccagggatgaagctgacttgattgtggtggataagctttttcatgtgctgttggatttggtttgccagtattttattgaggatttctgcatcaatgttcatcagggacattggccc i calJac3.chr19 C 0 C 0 e mm10.chr1 178857799 2466 + 195471971 I e canFam3.chr7 36438730 2271 + 80974532 I e rheMac3.chr1 17004726 7440 - 229590362 I e nomLeu3.chr5 140298347 100 - 143122389 M a score=159483.000000 s hg38.chr1_KI270759v1_alt 289917 68 + 425601 gaaattttctttttttgttgtgtctctgccaggttttggtatcaggatgattctggcctcataaaatg s panTro4.chr1 225046370 68 + 228333871 gaaattttctttttttgttgtgtctctgccaggttttggtatcaggatgattctggcctcataaaatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226415384 68 - 229942017 gaaattttctttttttgttgtgtctctgccaggttttggtatcaggatgatgctggcttcataaaatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140298447 64 - 143122389 gaaattttc-ttttttgttgtgtctct--caggttttggtatcaggatgattccggc-tcataaaatg i nomLeu3.chr5 M 100 C 0 s macFas5.chr1 223770494 68 - 227556264 gaaattttctttttttgctgtgtctctgccaggttttggtatcaggatgatgctggcctcataaaatg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16820732 68 - 220367699 gaaattttctttttttgttgtgtctctgccaggttttggtatcaagatgatgctggcctcataaaatg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82618604 68 + 85787240 gaaattttctttttctgttgtgtctctgccaggttttggtatcaggatgatgctggcctcataaaatg i chlSab2.chr25 C 0 I 7963 s calJac3.chr19 14299170 68 - 49578535 gaaattttctttttttgttgtgtctctgccaggttttggtatcaggatgatgctggcctcataaagtg i calJac3.chr19 C 0 C 0 e mm10.chr1 178857799 2466 + 195471971 I e canFam3.chr7 36438730 2271 + 80974532 I e rheMac3.chr1 17004726 7440 - 229590362 I a score=3903798.000000 s hg38.chr1_KI270759v1_alt 289985 2403 + 425601 ggttagggaggagtccctctttttctatagtttggaatagtttcagaaggaatggtatcagctcttctttgtacctctggtagaattcagctgtgaatctgtctggtcctgggctttttttggttggtaggctgcgaaattactgcctcaatttcagaactagatattgatctattcagggattcgacttcttcttggtttaggcttgggagggtgtatgtgtccaggaatttatccatttcttctagattttgtagtttatttgcatagaggtgttcatagtattctctgacggtagtttgtatttctgtgggatcagtggtgata-tcccctttatcattttttattgtgtctatttgattcttctctcttttcttctttgttagtctggctagcggtcta----ttttgataatctttt-caaaaaaccagctcctggattcattgat----tttttgaaggattttttgtgtctctatttccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatctgtttgctcttgcttctctagttcttttaattgtgatgttagggtgtcgattttagatctttcctgctttctcctgtggacattgagtgctataaatttccctctaaacattgctttaaatgtgtcccagagattctggtatgttgtgtctttgtgctcattggtttcaaagaaattatttatttctgccttcatttcattatttacccaatagtcattcagaagcaggttgttcagtttccatgtagttgtgcagttttgagtgagtttcttaaccctgagttctaatttgattgcagtgtggtctgagagactgtttgttatgattttc-atttttttgcatttacttcc----aattatgtggtcgatttcagaatatgtggtg-------ctgagaagaatg--tatattctgttgatttgggttggagagttctgtagatgtcttttaggttcactcagtcctgagctgagttcaagccctgaatatccttattaattttctgtctcgttgc----tctaatattgacagtgggatgttaaagtctcccactattattgtgtgggagtctaaatctctttgtaggtctctgagaatttgctttgcgaatctgggtgctcctgtattgggtgcatatatatttaggatcattagctctgcttgttgcattgacccctttaccattatgtaacgccttaattgtctttttttaatctttgttggtttaaagtctgttttatcagacactacgaccgcaacccttgc----ttttttt----gtttgttttccatttgcttggtaaatcttcctccatccctttattttgaggctatgtgtgactc--------agatgggtctcctgaatacagcaccctgatgggtcttgactctttatccaatttgccagtctatatcttttaatt---ggg-gcat-----ttagcccatttacatttaaggttaatattgttatgtgtgaatttgatcctgtcattatgatgctagctggttatttttcccattagtcgatgcagttttttcatagcatgaatggtctttacaatttggtatctttgtgcagtgggctggtaccagttgatcctttccatgtttagtgcttccttcaggagctcttgtaaggcaggcctggtggtgacaaaatctctcagcatttgcctgtctgtaagggattttatttctcctttgcttatgaagcttagtttggctggatatgaaattctgggttgaaaatt-----ctttaagagtgttgactattggcccccaccctcttctggcttgtagggtttctgcagagagatctgctgttagtctagggaagatgggcttccctttgtgggtaacctgacctttctctctag-tgcccataaca-tttttccatcatttcaaccttggtgaatctgacgattttgtgtcttggggttgctcttctcgaggagtatctttttggtgttctctatatattctgaatttaaatgttggcctgtcctgctagtttgaggaaattctcctggataatatcctgaagagtggtttccaacttggttccattctccctatcactttcaggtacaccaatcaaacataggtttggtcttttcacatagttccatatttcttggaggctttgttcattccttttcattcttttttctctaatcttgtcttcacgctttatttcactaagttgatcttcaatctctgctatcctttcttccgcttgatcgattcagctattgatac-tgtgt-gtgcttcatgaagttctcatgctgtgtttttcaactccatcaggtcatttgtgttcttctctaaactggctattctagttagcaattcctctaacc--ttttttcaaggttcttagcttccttg--tattgggttagagcatgctccttt s panTro4.chr1 225046438 2397 + 228333871 ggttagggaggagtccctctttttctatagtttggaatagtttcagaaggaatggtatcagctcttctttgcacctctggtagaattcagctgtgaatctgtctggtcctgggctttttttggttggtaggctgcgaaattactgcctcaatttcagaactagatattggtctattcagggattcgacttcttcttggtttaggcttgggagggtgtatgtgtccaggaatttatccatttcttctagattttgtagtttatttgcatagaggtgttcatagtattctctgacggtagtttgtatttctgtgggatcagtggtgata-tcccctttatcattttttattgtgtctatttgattcttctc-----tcttctttgttagtctggctagcggtcta----ttttgataatctttt-caaaaaaccagctcctggattcattgat----tttttgaaggattttttgtgtctctatttccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatctgtttgctcttgcttctctagttcttttaattgtgatgttagggtgtcgattttagatctttcctgctttctcctgtggacattgagtgcaataaatttccctctaaacattgctttaaatgtgtcccagagattctggtatgttgtgtctttgtgctcattggtttcaaagaaattatttatttctgccttcatttcattatttacccaatagtcattcagaagcaggttgttcagtttccatgtagttgtgcagttttgagtgagtttcttaaccccgagttctaatttgattgcagtgtggtctgagagactgtttgttatgattttc-atttttttgcatttacttcc----aattatgtggtcgatttcagaatatgtggtg-------ctgagaagaatg--tatattctgttgatttgggttggagagttctgtagatgtcttttaggttcactcagtcctgagctgagttcaagccctgaatatccttattaattttctgtcttgttgc----tctaatattgacagtgggatgttaaagtctcccactattattgcgtgggagtctaaatctctttgtaggtctctaagaatttgctttgcgaatctgggtgctcctgtattgggtgcatatatatttaggatcattagctctgcttgttgcattgacccctttaccattatgtaacgccttaattgtctttttttaatctttgttggtttaaagtctgttttatcagacactacgaccgcaacccttgc----ttttttt----gtttgttttccatttgcttggtaaatcttcctccatccctgtattttgagcctatgtgtgactc--------agatgggtctcctgaatacagcaccctgatgggtcttgactctttatccaatttgccagtctatatcttttaatt---ggg-gcat-----ttagcccatttacatttaaggttaatattgttatgtgtgaatttgatcctgtcattatgatgctagctggttatttttcccattagtcgatgcagttttttcatagcatgaatggtctttacaatttggtatctttgtgcagt-ggctggtaccagttgatcctttccatgtttagtgcttccttcaggagctcttgtaaggcaggcctggtggtgacaaaacctctcagcatttgcctgtctgtaagggattttatttctcctttgcttatgaagcttagtttggctggatatgaaattctgggttgaaaatt-----ctttaagagtgttgactattggcccccaccctcttctggcttgtagggtttctgcagagagatctgctgtttgtctagggaagatgggcttccctttgtgggtaacccgacctttctctctag-tgccccgaaca-ttttcccatcatttcaaccttggtgaatctgacgattttgtgtcttggggttgctcttctcgaggagtatctttttggtgttctttatatattctgaatttaaatgttggcctgtcctgctagtttgaggaaattctcctggagaatatcctgaagagtggtttccaactcggttccattctccccatcactttcaggtgcaccaatcaaacataggtttggtcttttcacatagttccatatttcttggaggctttgttcattccttttcattcttttttccctaatcttgtcttcacgctttatttcactaagttgatcttcaatctctcttatcctttcttccacttgatcgattcagctattgatac-tgtgt-gtgcttcatgaagttctcatgctgtgtttttcaactccatcaggtcatttgtgttcttctctaaactggctattctagttagcaattcctctaacc--ttttttcaaggttcttagcttccttg--tattgggttagagcatgctccttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226415452 2390 - 229942017 ggttaaggaggagtccctctttttctatagtttggaatagtttcagaaggaatggtatcagcttttttttgtacctctggtagaattcagctgtgaatctgtctggtcctgggcattttttggttggtaggctgcg-aattactgcctcaatttcagaactagatattggtctattcagggattcaacttcttctttgtttagtcttgggagggtgtatgtgtccaggaatttatccatttcttctagattttgtagtttatttgcatagaggtgtttatagtattctctgacggtagtttgtatttctgcgggatcagtggtgata-tcccctttatcattttttattgtgtctatttgattcttctctcttttcttctttattagtctggctagcggtcta----ttttgataatctttt-caaaaagcccgctcctggattcattgat----tttttgaagggttttttgtgtctctatttccttcagttctgctctgatcttagttatttcttgtcttctgctagcttttgaatctgtttgctcttgcttctctagttcttttaattgtgatgttagggtgtcgattttagatctttcctgctttgtcctgtggacaatgagtgctataaatttccgtctaaacattgctttaaatgtgtcccagagattctggtatgttgtgtctttgtgctcactggtttcaaagaacttatttatttctgccttcatttcattatttacccaatagtcattcagaagcaggttgttcagtttccatgtagttgtgcagttttgagtgagtttcttaatcctgagttccaatttgattgcagtgtggtctgagagactgtttgttatgattttctttttttttgcatttacttcc----aattatgtggtcgatttcagaatatgtggtg-------ctgagaagaatgtatatattctgttgatttggggtggagcgttctgtagatgtcttttaggttcactcagtcctgagctgagttcaagccctgaatatccttgttaattttctgtctcattgc----tctaatattgacagtgggatgttaaagtctcccactattattgtgtgggagtctaaatgtctttgtaggtctctaagaatttgctttatgaatctgggtgctcctgtattggatgcatatatatttaggatcattagctctgcttgttgcattgatccctttaccattatgtaatgccttaattgtcttttttttatctttgttggtttaaagtctgttttatcagtaactaggactgcaacccttgc----ttttttt----gtttgttttccatttgcttggtaaatcttcctccatccctttattttgagcctatgtgtggctc--------agatgggtctcctgaatacagcaccctgatgggtcttgactctttatccaatttgccagtctatatcttttaatt---gggagcat-----ttagcccatttacatttaaggttaatattgttatgtgtgaatttgatcctgtgattatgatgctagctggttatttttcccattagtcgatgcagttttttcatagcatgaatggtctttacaatttggtgtctttgtgcagt-ggctggtaccagttgattctttccatgtttagtgcttccttcaggagctcttgtaaggcaggcctggtggtgacaaaatctctcagcatttgcccgtctgtaaaggattttatttctcctttgcttatgaagcttagtttggctggatatgaaattctgggttgaaaatt-----ctttaagagtattgactattggcccccaccctcttctggcttgtaggatttctgcagagagatctgctgttagtctagggaagatgggcttccctttgtgggtaacccgacctttctctctag-tgcctgtaaca-tttttccatcatttcaaccttggtgagtctgacgattttgtgtcttggggttgctcttctcgaggagtatctttgtggtgttctctatatttcctgaatttaaatgttggcctgtcttgctagtttgaggaaattctcctggataa---------------tttccaacttggttccattctccctatcactttcaggtacaccagtcaaacataggtttggtcttttcacatagttccatatttcttggaggcgttgttcattccttttcattcttttttctctaatcttgtcttcacgctttatttcactaagttgatcttcaatctctgatatcctttcttccgcctgatcgattcatctattgatac-tgtgt-atgcttcatgaagttcttgtgctgtgtttttcagctccatcaggtcatttatgttcttctctaaactggctattctagttagcaattcctctaacc--ttttttcaaggtccttagcttccttg--tattgggttagagcatgctccttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140298511 2394 - 143122389 ggttagggaggagttcctctttttctatagtttggaatagtttcagaaggaatggtatcagctcttctttgtacctctggtagaattcagctgtgaatctgtctggtcctgggctttttttggttggtaggctgct-aatcactgcctcaa-ttcagaactagatattggtctattcagggattcga---cttcttggtttagtcttgggagggtgtatgtgtccaggaatttatccatttcttctagattttgcggtttatttgcatagaggtgtttatagtattctctgatggtagtttgtatttctgtgggatcagtggtgata-tcccctttatcattttttattgtgtctatttgattcttctgtcttttcttttttattagtctggctagcagtcta----ttttgataatcttttaaaaaaaactggctcctggattcattgat----tttttgaagggttttttgtccctctatttccttcagttctgctctgatcttagttatttcttgtcttctgctagcttttgaatctgtttgctcttgcttctctagttcttttatttgtgatgttagggtgtcgattttagatctttcttggtttctcctgtggacattgagtgctataaatttccctctaaacattgctttaaatgtgtcccagagattctggtatgttgtgtctttgtgctcattggtttcaaagaacttatttatttctgccttcatttcgttatttacccactagtcattcaggagcaggttgctcagtttccatgtagttgtgcagttttgagtgagtttcttaatcctgagttctaatttgattgcagcgtggtctgagagactgtttgttacgattttc-atttttttgcatttacttcc----aattatatggttgatttcagaatatgtggtg-------ctgagaagaatg--tatattctgttgacttggggtggagagttctgtagatgtcttttaggttcactcggttctgagctgagttcaagccctgaatatccttgttaactttctgtctcgttgc----tctaatattgacagtgggatgttaaagtctcccactattattgtgtgagagtctaaatctccttgtaggtctctaagaatttgctttacgaatctgggtgctcctgtattgggtgcatatatatttaggatcgttagctctgcttgttgcattgatccctttaccgttatgtaatgccttaattgtcttttttt-atctttgttggcttaaagtctgctttatcagacactaggattgcaacccttgc----tttttttgttagtttgttttccatttgcttggtaaatctgcctccatccctttattttgagcctacgtgtggctc--------agaagggtctcctgaatacagcaccccgatgggtcttgactctttatccaatttgccagtctatatcttttaattttgggg-gcat-----ttagcgcatttacatttaaggttaatattg---tgtgtgaatttgatcctgtcattatgatgctagctggttatttttcccattagtcgatgcagtttcttcatggcatgaatggtctttacaatttggtatctttgtgcagt-ggctggtaccagttgatcctttccatgtttagtgcttccttcaggagctcttgtaaggcaggcctggtggtgacaaaatctctcagcatttgcttgtctgtaagggattttatttctcctttgcttatgaagcttagttaggctggatatgaaattctgggttgaaaatt-----ctttaagagtgttgactgttggcccccaccctcttctggcttgtagggtttctgcagagagatcagctgttagtct------gatgggcttccctttgtgggtaacccgacctttctctctag-cgcccgtaacattttttccttcatttcaaccttggtgaatctgacgattatgtgtcttgggattgctcttcttgaggagtatctttgtggggttctctatatttcctgaatttgaatgttggcctgtcttgctagtttgaggaaattctcctggataatatcctgaagag-ggtttccaacttggttccattctccccatcactttcaggtacaccaatcaaatataggtttggtcttttcacatagtcccatatttcttggaggctttgttctttccttttcattcttttttctctaatcttgtcttcacgctttatttcattaagttgatcttcaatctctgatat-ttttcttccgcttgatcgattcagctattgatac-tgtgt-atgcttcacgaagttctcgtgctgtgtttttcagctccatcaggtcatttatgttcttctctaaactggctattctagttagcaattcctctaacc--ttttttcaaggttcttagcttccttg--tgttgggttagaccatgctccttt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223770562 2413 - 227556264 gattcgggagaagtccctctttttctattgtttggaatagtttcagaaagattggtaccagctactctttgtacctctggtagaattcagctgtgaatctgtctggtcctgggcttttttcggatggtaggctatt-aattactgcctcaatttcagacctagctattggtctattcagggattcaacttcttcctggtttagtcttgggagggtgtatgtgtccaggaatttatctattccttctagattttctaatttatttgcatagaggtatttatagtattcactgatggtagcttgtatttctgtgagatcagtggtgata-tcccctttatcattttttattgtgtctatttgattcttctctcttttcttctttgttagtccagctagtggtctatctcttttgataatctttt-caaaaaactggctcctggattcattgat-tttttttttaaaggttttttgtgtctctatctccttcagttctgctctgatcttagttatttcttgtcttctgctaacttttgaatctgtttgctcttgcttctctagttcttttaattgtgatgttacggtgttgattttagatctttcctgctttctcctgtgggcattgagtgctgtaaatttccccctaaacactgctttagccatgtcccagagattctggcacgttgtgtctttgtgctcactggtttcaaggaacttatttatttctgccttaattttgttatttacctagtagtcattcagaagcaggttgttcagtttccatgtagttgtgcagttttgagtgagtttcttaatcctgagttc-aatttgattgcactgtggtctgagagactgtttgttatgatttcc-attcttttgcattaacttccaactaactatgtggtcaatttcagaataagtgctgtgtcacactgagaagaatg--tatattctgttgatttggggtggatagttctgtagatgtctattaggtccgcttggtccagagccgagttcaagtcctgaatatccttgttaattttctgtcttgttgc----tctaatattgagagtggggtgttaaagtctcccactattattgtgtgggagtctaagtctcttcgtaggtctctaagaacttgctttacaaatctgggtgctcctgtgttgggcacatatatatttaggatagttagctctgcttgttggattgattcctttaccattatgtaatgcccttctttgtctgttttgatctttgttggtttgaagtctgttttatcagagactaggattgcaatccccgc----ttttttt-----tttttttttcatttgcttggtaaatcttcctccatccctttattttgagcctatgtgtgtttttgcacatgagatgggtctgctgaatacagcaccctgatgggtcttgactctttatccaatttgccagtctgtatcttttaatc---ggg-gcat-----ttagcccgtttacatttaaggttaatattgttatgtgtgaatttgatcctgtcattatgatgctagctggttattttgcccgtta------gcagtttcttcatggtgtcgatggtctttacgatttggtatgtttttgcagt-ggctggtaacgttttttcctttccatatttagggcttccttcaggagctcctgtaaggcaggcctggtggtgacaaaatttctcagcatttgcttgtctgtaaaggattttgtttctccttcgcttatgaagcttagtttggctagatatgaaattccaggttgaaaatt-----ctttaagaatgttgactattggcccccactctcttctggcttgtagggattctgcagagagatccgctgttagtct------gttgggcttccctttgtgggtaacccgaccttactctctggctgcacttaacattttttccttcatttcaaccttggtgaatctgacgattatgtgtctt-gggttgctcttctcaaggagtagctttgtggggctctctatgtttcctgaatttgaatgttggcctgtcttgctaggttggggaagttctcttggataataacctgaagagtgttttccaacttggttccattctccctgttactttcaggtccaccaatcaaacacaggtttggtcttttcacatagtcccatatttcttagaggctttgtttgttccttttcattcttttttctctaatcttgtcttcatgctttatttcattaagttgatcttcaatttttgatat----ccttctgcttgatcgatttggctattgatacttgtgt-atgcttcatgaagttctcgtgctgtgtttctcagctccaccaggtcatttatgtttttctctaaactggctattctagttagcaattcctctaaccttttttttcacggttcttagcttccttg--cattgggttagaacatgctccttt i macFas5.chr1 C 0 I 3958 s papAnu2.chr1 16820800 2413 - 220367699 gatTAGGGAgcagtccctctttttctattgtttggaatagtttcagaaggattggtaccagctactctttgtacctctggtagaattcggctgtgaatctgtccggttctgggcttttttcggatggtaggctatt-aattactgcctcaatttcagacctagctattggtctattcagggattcaacttcttcctggtttagtcttgggagggtgtatgtgtccaggaatttatccattccttctagattttctaatttatttgcatagaggtgtttatagtattctctgatggtagtttgtatttctgtgagatcagtggtgata-tcccctttatcattttttattgtgtctatttggttcttctctcttttcttctttgttagtccaGCTGGCGGTCTATCTCTTTtgataatctttt-caataaactggctcctggattcgttgatgttttttttttaagggtttttgtgtctctatcttcttcagttctgctctgatcttagttatttcttgtcttctgctaacttttgaatctgtttgctcttgcctctctagtccttttaattgtgatgttagggtgttgattttagatctttcctgctttctcctgtgggcattgagtgctataaatttccccctaaacactgctttagctatgtcccagagattctggcacgTTGTGTCTTTGTGCTCACTGGTTTCaaggaacttatttatttctgccttaattttgttatttacccagtagtcattcagaagcaggttgttcagtttccatgtagttgtgcagttttgagtgagtttcttaatcctgagttc-aatttgattgcactgtggtctgagagactgtttgttatgatttcc-attcttttgcattaacttcc----aactatgtggtcaatttcagAATAAGTGCTGCGTGACACTgagaagaaca--tatattctgtttatttggggtggatagttctgtagatgtctattaggtctgcttggtccagagccgagttcaagtcctgaatatccttgttaattttctgtcttgttgc----tctaatattgagagtggggtgttaaagtctcccactattattgtgtgggagtctaagtctctttgtaggtctctaagaacttgctttacgaatctgggtgctcctgtgttgggcacatatatatttaggatagttagctctacttgttgcattgattcctttaccattatgtaatgcccttttttgtctgttttgatctttgttggtttgaagtctgttttatcagagactaggattgcaatccctgcttttttttttt-----tttttttttcatttgcttggtaaatcttcctccatccctttattttgagcctatgtgtgtttttgcacatgagatgggtctgcTGAATACAGCaccctgatgggtcttgactctttatccaatttgccagtctgtatcttttaatt---ggg-gcat-----ttagcccatttacatttaaggttaatattgttatgtgtgaatttgatcctgtcattatgatgctagctggttattttgcctgtta------gcagtttcttcatggtgtcaatggtctttacaatttggtatgtttttgcagt-ggctggtaacggtttttcctttccatatttagggcttccttcaggagctcctgtaaggcaggcctagtggtgacaaaatctctcagcatttgcttgtctgtaaaggattttgtttctcctccgcttatgaagcttagtttggctagatatgaaattccgggttgaaaatt-----ctttaagaatgttgactattggcccccactctcttctggcttgtagggattctgcagagagatccgctgttagtcc------gttgagcttccctttgtgggtaacccgaccttactctctggctgcacttaacattttttccttcatttccaccttggtgaatctgatgattatgtgtcttggggttactcttctcaaggagtaGCTTTGTGGGGCTCTctatgtttcctgaatttgaatgttggcctgtcttgctaggttggggaagttctcctggataataacctgaagagtgttttccaacttggttccattctccctgttaCTTTCAGGTCCACCAATCAAAcacaggtttggtcttttcacatagtcccatatttcttagaggctttgtttgttccttttcattctttttcctctaatcttgtcttcatgctttatttcattaagttgatcttcaatttTTGATAt----ccttctgcttgatcgatttggctattgatacttgtgt-atgctttacgaagttctcgtgctgtgtttctcagctccaccaggtcatttatgtttttctctaaactggctattctagttagcaattcctctaacc--ttttttcaaggttcttagcttccttg--cattgggttagaacatgctccttt i papAnu2.chr1 C 0 I 3894 s calJac3.chr19 14299238 2371 - 49578535 agttagggagaagtccctctttttctgtcgttcggaatattttcagaaggaatggtaccagctcttctttgtacctttggtagaatttggctgtgaaactgtctggtcctgggcttcttttggttggtaggctact-gatgactgcctcaatttcagaacttgttattggtctgttcagggagtcaacttcttcctg---------tgggagggcgtatgtgtccaggaatttatccatttcttctag---------tttatttgcatagaggtgtttatagttttctctgatggtagtttgtatttctgtgggatcagtggtgatattcccctttatcattttttattgtgtctatttgattcttctctcttttcttctttattagtctagcgagtggtctatctactttgttaatttttttcaaaaaaacagctcccggattcattgat----ttttttaagggtttttcgtgtctctatctccttcagttctgttctgatcttagttatttcttgtcttctgctagcttttgaatttgtttgctcttgcttctcttgtttttttcattgtgatgttagggtgtcgattttagatctttcctgctttctcctgtgggcattgagtgctatcagtttccctctaaacactgc-ttagctgcgtcccagcgattctggtacgttgtgtctttgttctcattggtttcaaagaactcctttatttctgccttacttttatgatttacccagaagtcattgaggagcaggttgttcagtttccatgcagttgtgtcattttcagtgagtttcttaatcctgagttctaatttgattgcactgtggtctcagagactgtttgttatgatttcc-attcttttccatttatttcc----aagtgcg----------------atgtggtg-------ctgagaagagtg--tatattctgtttatttggggaggcgagttctgtagatgtctgttaggtccagttggtcccgagctgaattcaagttctgaatatccttgttaattttctgtctcgttgttctgtctaatattgacagtggggtgttaaagtctcccagtaggattgcatgagggtctaagtcactttgtaggtgtctaagaacttgctctgtgagtctgggtgctcctgtatggggtacgtacatgtttagggtagtcagctcttcttgctgcatggatccctttaccattatgtaatgccctcctttgacttttttggtctttgttggcttaaagtttattctgtcagagactaggattgcaacccctgc----tttatttttatttttgctttccgtttgcttggtaaacattcctccatctcttgattttgactctgagtgtgtctt-------------tgcatgtaaaatacagcacaccaatgggtcttgactctttatgtaatttgccagtctgtgtcttttaagt---gag-gcatgtaaattagcctatttacagttaacattaatattgttatgtgtgaatttggtcctgtcattttgatgctagctggttgttttgcccattagtcgatgcagtttttttgtagggtcagtggcctttacaatttgttatgtttttgcact-ggctggtaccagtt----cttttcatatttagtgcttttttcaggagctcttgtaaggcagacctggtggtaacagaatccctcaacattttcttgtctgcaaaggattttatttatctttcgcttatgaagcttagtttggctggatatgaaattcttgtttggaaattctttactttaggaatgttgaataccggcccccactctcttctggcttgcagggtttctgcagagagatccgctgttagtct------gatgggcttccctttgtgggtaacccgacctttctctctggctgtccttaacattttttccttcatttcaaccttggtgaatctgacgatta--tgttttggggttgctctccttgaggagtgtctttttggtgtcctctgtatttcctaaatctgaatgctggcctgtcttgctgggttggggaagttctcctgggtgatatcctgaagagtgttttccaaattggttccattctccccttcacttgcagg--------tcaaacgtaggtttggtcttttcatatagtctcatgtttcttggaggctttgtttgttccttttcattcttttttctctaatcttgtcttcacgctttatttcattaagtttatcttcaatctctgatatcctttcttctgtttgatcaatttggctattgatacttgttcaactattcacaaagttctcatgctgtgtttttcaactccatcaggttgttgatgttcttccctaaactggttactctcgtttgcaattcctctgccc--gattttcaaggttcttagcttccttggcttttgggttagaacatgctccatt i calJac3.chr19 C 0 C 0 e mm10.chr1 178857799 2466 + 195471971 I e canFam3.chr7 36438730 2271 + 80974532 I e rheMac3.chr1 17004726 7440 - 229590362 I e chlSab2.chr25 82618672 7963 + 85787240 I a score=5190.000000 s hg38.chr1_KI270759v1_alt 292388 3 + 425601 agt s panTro4.chr1 225048835 3 + 228333871 agt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226417842 3 - 229942017 agt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140300905 3 - 143122389 agt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223776933 3 - 227556264 AGT i macFas5.chr1 I 3958 C 0 s papAnu2.chr1 16827107 3 - 220367699 AGT i papAnu2.chr1 I 3894 C 0 s calJac3.chr19 14301609 3 - 49578535 agc i calJac3.chr19 C 0 I 35124 e mm10.chr1 178857799 2466 + 195471971 I e canFam3.chr7 36438730 2271 + 80974532 I e rheMac3.chr1 17004726 7440 - 229590362 I e chlSab2.chr25 82618672 7963 + 85787240 I a score=4011.000000 s hg38.chr1_KI270759v1_alt 292391 2 + 425601 tc s panTro4.chr1 225048838 2 + 228333871 tc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226417845 2 - 229942017 tc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140300908 2 - 143122389 tc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223776936 2 - 227556264 TC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16827110 2 - 220367699 TC i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14336736 2 - 49578535 TC i calJac3.chr19 I 35124 C 0 e mm10.chr1 178857799 2466 + 195471971 I e canFam3.chr7 36438730 2271 + 80974532 I e rheMac3.chr1 17004726 7440 - 229590362 I e chlSab2.chr25 82618672 7963 + 85787240 I a score=10948.000000 s hg38.chr1_KI270759v1_alt 292393 6 + 425601 agaTAG s panTro4.chr1 225048840 6 + 228333871 agaTAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226417847 6 - 229942017 agaTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140300910 6 - 143122389 agTTAG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223776938 6 - 227556264 AGATAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16827112 6 - 220367699 AGATAG i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14336738 6 - 49578535 AGACAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36441001 6 + 80974532 AAATAC i canFam3.chr7 I 2271 C 0 e mm10.chr1 178857799 2466 + 195471971 I e rheMac3.chr1 17004726 7440 - 229590362 I e chlSab2.chr25 82618672 7963 + 85787240 I a score=1911.000000 s hg38.chr1_KI270759v1_alt 292399 1 + 425601 A s panTro4.chr1 225048846 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226417853 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140300916 1 - 143122389 A i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17012166 1 - 229590362 A i rheMac3.chr1 I 7440 C 0 s chlSab2.chr25 82626635 1 + 85787240 A i chlSab2.chr25 I 7963 C 0 s canFam3.chr7 36441007 1 + 80974532 A i canFam3.chr7 C 0 C 0 e mm10.chr1 178857799 2466 + 195471971 I e calJac3.chr19 14336744 0 - 49578535 C e papAnu2.chr1 16827118 0 - 220367699 C e macFas5.chr1 223776944 0 - 227556264 C a score=808293.000000 s hg38.chr1_KI270759v1_alt 292400 260 + 425601 GAGATGATAAGGGATCAGAAGAGGCCAGTGGT----GAA-TTAACTCTGTAGCCTAGAACCTTGTAGGGGTAAAAAC----TATTTATCATCACCTACACACTCTTACTGGGCATTTATTGTGGCCAAGACTCGGG-------------------TTCCTGT-------GTGTCTGTAGAGGGCCTTCATTGTGGGTATCCACAAAGTGAGTTGAAACAAAGCTCATGCATGAGAAGCGCTGATGGAGTTCTCCCTTGCTCCTGCCACCTTCTTATCATCTGTAGTCTTTTTCTT s panTro4.chr1 225048847 261 + 228333871 GAGATGATAAGGGATCAGAAGAGGCCAGTGGT----GAATTTAACTCTGTAGCCTAGAACCTTGTAGGGGTAAAAAC----TATTTATCATCACCTACACACTCTTACTGGGCATTTATTGTGGCCAAGACTCGGG-------------------TTCCTGT-------GTGTCCGTAGAGGGCCTTCATTGTGGGTATCCACAAAGTGAGTTGAAACAAAGCTCATGCATGAGAAGCGCTGATGGAGTTCTCCCTTGCTCCTGCCACCTTCTCATCATCTGTAGTCTTTTTCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226417854 260 - 229942017 GAGATGATAAGGGATCAGAAGAAGCCAGTGAT----GAATTTAACTCTGTAGCCTACAACCTTGTAGGGGTAAAAAC----TATTTATCATCACCCACACACTCTTACTGGGCATTTGTTGTGGCCAAGACTCGGG-------------------TTCCTGT-------GTGTCTGTAGAGGGCCTTCGTTGTGGGTATCCACAAAGTGAGTTGAAACAAAGCTCATGCATGAGAAGCACT-ATGGAGTTCTCCCTTGCTCCTGCCACCTTCTCATCATCTGCAGTCTTTTTCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140300917 258 - 143122389 GAGATGATAAGGGATCAGAAGAGGCCAGTGGT----GAATTTAACTCTGTAGCCTAGAACCTTATAGGGGTAAAAAC----TATTTATCATCACCTACACACTCTTACTGGGCATTTATTGTGGCCAAGACTTGGG-------------------TTCCTGT-------GTGTCTGTAGAGGGCCTTCGTTGTGGGTATCCACAAAGTGAGTTGAAACAAAGCTCATGCATGAGAAGCACTGATGGAGTTCTCCCTTGCTCCTGCCACCTT---ATCATCTGCAGTCTTTTTCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17012167 261 - 229590362 GAGATGATGAGGGGTCAGAAGAGGCCAGTGGT----GAATTTAACTCCATAGCCTAGAATCTTGTAGGGGTAAAAAC----TATTTATCATCACTTGCACACTCTTACTGGGCATGTATTGTGGCCAAGACTCAGG-------------------TTCCTGT-------GTGTCTGTAGAGAGCCTTCGTTGCGGGTATCCACAAAATGAGTTGAAACAAAGCTCGCGCATGAGAAGGACAGATGGAGCTCTCCCTTGCTCCTGCCACCTTCTCACCATCTGCAGTCTTTTTCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223776944 260 - 227556264 -AGATGATGAGGGGTCAGAAGAGGCCAGTGGT----GAATTTAACTCCGTAGCCTAGAATCTTGTAGGGGTAAAAAC----TATTTATCATCACTTGCACACTCTTACTGGGCATGTATTGTGGCCAAGACTCAGG-------------------TTCCTGT-------GTGTCTGTAGAGAGCCTTCGTTGCGGGTATCCACAAAATGAGTTGAAACAAAGCTCGCGCATGAGAAGGACAGATGGAGCTCTCCCTTGCTCCTGCCACCTTCTCACCATCTGCAGTCTTTTTCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16827118 260 - 220367699 -AGATGATGAGGGGTCAGAAGAGGCCAGTGGT----GAATTTAACTCCGTAGCCTAGAATCTTGTAGGGGTAAAAAC----TATTTATCATCACCTGCACACTCTTACTGGGCAGGTATTGTGGCCAAGACTCAGG-------------------TTCCTGT-------GTGTCTGTAGAGGGCCTTCGTTGCGGGTATCCACAAAATGAGTTGAAACAAAGCTCGCGCATGAGAAGGACGGATGGAGCTCTCCCTTGCTCCTGCCACCTTCTCACCATCTGCAGTCTTTTTCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82626636 261 + 85787240 GAGATGATGAGGGGTCAGGAGAGGCCAGTGGT----GAATTTAACTCCGTAGCCTAGAATCTTGTAGGGGTAAAAAC----TATTTATCATCACCTGCACACTCTTACTGGGCATTTATTGTGGCCAAGACTCAGG-------------------TTCCTGT-------GTGTCTGTAGAGGGCCTTCGTTGCGGGTATCCACAAAATGAGTTGAAACAAAGCTCGCGCATGAGAAGGACAGATGGAGCTCTCCCTTGCTCCTGCCACCTTCTCACCATCTGCAGTCTTTTTCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14336744 272 - 49578535 -AGGCGA--AGGGATCGGAAGA-GCCAGTGGT----GACCTGAACTCTGTAGCCTAGAACGTTGTAGAGGTGAAAAC----CGTTTCTCATCACCCACACGCTCCTACTGGGCGT-TGTCATGGCCAAGACTCAGGTCAGGGAACTGTCCGCAGTTTCCTGT-------GTGTCTATAG-GGGCCTTTGTCGTGGGTATGCACAAAATAAGTTGAAACAAA-CTCGCACGTGAGAAGGGCTGGTGGAGTTCTCCC-TGCTCCTGCCACCTTCTCGTCACCTGCAGTCtttttttt i calJac3.chr19 C 0 I 303 s mm10.chr1 178860265 220 + 195471971 GAGGTG-TAAAAGATTGGAAAGATGCAGTGATTGGCTGATCTAATGCTATCCCCCAGGACCCTGAGTAGG--AAAAC----CATCTTTGATTACATCCAA--------------------GTGGCCAAG---CGGT-------------------CCCTTGTCTTGCTCTTATCCATGGATGGCTTTCACCGTGGATGTCCAT-----------GTACGAAACTT---CAGTAAGATCGAAGGCAGAGTTCT---------TTGCC-CCTTATCACCTTGTGTAGTCTTTCTG-- i mm10.chr1 I 2466 C 0 s canFam3.chr7 36441008 278 + 80974532 AAAATGCAAAAGGAGTAAAAGATTTCAGTGCT----TCATTT-ACTCTGCTGCCTCTAACCTTAT-GGGGTGGAAATGATATATATATCCTCACTGACCCACTTCCCTTGAGCTTTTGCTGTGGCCGAGATGTAGG-CTGGGGACCACTCACTGTTTCATGT-------GTGTCTGTTGAGGGCCTTCATTGTGAGGGCCCCCAGAG-GAGTTTAAGCAAAGCTCAGGTGTGAGAATGG-AGACTGTGTTCTCTCTTTCCCCCACTGCCTCACTGCCATCTGTGGTCTTCTCTG- i canFam3.chr7 C 0 C 0 a score=6058394.000000 s hg38.chr1_KI270759v1_alt 292660 1684 + 425601 ACTGCTGAGGGATCCTTCCAGTGGTCACA-TTTGCCCATAGCCCTCCTGAACGCTTGAGTCTGCAGA----AAACCTCTAGCTGGACAGCTTCTGGGTAGAGAAACAGGCCATGAAGAGCCTC-CTACATGTGCACCATGT-------------------GGCTACGCTCCGTGACGAGGGAAAAACAGGAATATCTGTCTGCTGTGATCA--CGTGTAGTGGTCACGGTGAGAGATGACGGGGC-T-GCTCCTCCTCAGCCTCCAGTCAGGCTGTGT----GGCA----GCGATCACCTCCATGTCGATG----GAG----TGTCTGTGCAGTTTGGGAGCG--AGGCTCTGCCTCTCTCGGTGAGTGTCTCACAGTTCCTTTCTCCCTCAGCCCCATGATGCCGTCCAGAACAAGGTGCTGAACTGATTAATGAGCAGGACATAAAGACAACTGCTGTCCAGAGCAACAGCTGTCCCAATCCATCCGTGGAA----TAAACAAACAGGGCAGAGCGAGGTCCCGACCAGTGGGGACTTGGGTGCAGGAAATGCCAGTCTCTTCTTGCTTGAATCAGGGTGTCAGGGGGCCTTCCTGGCCACCACTCAGGCTGTTCCTTTAGCTTTCTGGATCCCATTCCCTGCAGGTCTACCCTTGGGAGTGAAAT-AGTGACCGTCCCTTTGAGCCCGAGAGCTGGGGAGAAGGCCGTGCCTGTTAACAGCTGCCTGGACCCT-----CTCTG-GAGAGCAGCAGGG-AGAGGCGGGGCTGGAGGAGATGTTGCCAAGAACCTAAGGGTGTTAGTGACAAAAGCAAGAACTCCTGGCAACAAGTCCGAGGGACTTTCTTGATCACAAGTGGTATCTCCTAAGCACTTTAATTATAGCAGATTAAGCAGGAAGTGGAGTGCCGGACTAAAGGAATAATGATACAAAGGAGGTGAAGCAGAAAAACTTAATTTCCTTCCTTTAAGGGA-AAA----------AAAAGTCCATTTATTTAGACGCATTGCAAAGAAAAGAATGGAGTGTGGC-CTTT----CCCCCAGCTCGGAGCTCAGTG----GGTTTTTAAAGAACTGTGTGTATCTCTTTGGCCAGACCAGCGACTGGGATCTTCAGCCTCTCTGCAGAAAATGAGCCGCAGGCTCGGGATTTCGTTAAGATGCAGGAGCATTCCTTCTGGACCAATGACTCACTCATTCAGCCCCTTCTTTCCCGCTTCTCCTTGTCAGCCCTCGCCTGGCTGAGCTCATATTTTACATTCAGCACCTCTGGTTACCCAGAAATTGCATGCAAAATTGTGAAATAGAAAAGCAGTGGGCTGTG-GGCTCCATCAGCTCTGCCTGGCGTTGCATCATCCTTGACTTGCAATGCTCAGAGGCTGGGCTAGGAGATTTGCTTACAGAAAGCCTG----------------AAGGTCCCAGGGACCTTCCCAAAGTTGCGACTTGAATG----CATGCTCTTAGCACACATGCTGTGTAACTGGGGCAGATCTGTAGGAATGAGTGGAACTGAAATCAGACCTTAGAAAGTCACAGTGAATAAGAAAATTGCCAGAATGGAATGCAGATATA----CCTACTG-GTTACTGTCCTGTATGTAGCGGCTGTGTGGGATTTGACTGTGTTTTACTAATAGGAGCCTTGTTGGGCCCAGTGCTTCATAACTAGCTCTGTCTGTCGGGAATCCCCCACAGTATCCTGCTTGTGATTCACGCTATCCAGAGTCCAGGGCAAGGAGTTCTAAAACCTTATCAT s panTro4.chr1 225049108 1685 + 228333871 ATTGCTGAGGGATCCTTCCAGTGGTCACA-TTTGCCCATAGCCCTCCTGAACGCTTGAGTCTGCAGA----AAACCTCTAGCTGGACAGCTTCTGGGTAGAGTAACAGGCCATGAAGAGCCTC-CTATATGTGCACCATGT-------------------GGCTGCGCTCCGTGACGAGGGAAAAACAGGAATATCTGTCTGCTGTGATCA--CATGTAGTGGTCACGGTGAGTGATGACGGGGC-T-GCTCCTCCTCAGCCTCCAGTCAGGCTGTGT----GGCA----GCGATCGCCTCCATGTTGATG----GAG----CGTCTGTGCAGTTTGGGAGCG--AGGCTCTGCCTCTCTCGGTGAGTGTCTCACAGTTCCTTTCTCCCTCAGTCCCATGATGCCGTCCAGAACAAGGTGCTGAACTGATTAATGAGCAGGACATAAAGACAACTGCTGCCCAGAGCAACAGCTGTCCCAATCCATCCGTGGAA----TAAACAAACAGGGCAGAGCGAGGTCCCGACCAGTGGGGACTTGGGTGCAGGAAATGCCAGTCTCTTCTTGCTTGAATCAGGGTGTCAGGGGGCCTTCCTGGCCACCACTCAGGCTGTTCCTTTAGCTTTCTGGATCCCATTCCCTGCAGGTCTACCCTTGGGAGTGAAAT-AGTGACCGTCCCTTTGAGCCTGAGAGCTGGGGAGAAGGCGGTGCCTGTTAACAGCTGCCTGGACCCT-----CTCTG-GAGAGCAGCAGGG-AGAGGCGGGGTTGGAGGAGATGTTGCCAAGAACCTAAGGGCGTTAGTGACAAAAGCAAGAACTCCTGGCAACAAGTCCGAGGGACTTTCTTGATCACAAGTGGTATCTCCTAAGCACTTTAATTATAGCAGATTAAGCAGGAAGTGGAGTGCTGGACTAAAGGAATAATGATACAAAGGAGGTGAAGCAGAAAAACTTAATTTCCTTCCTTTAAGGGACAAA----------AAAAGTCCATTTATTTAGACGCATTGCAAAGAAAAGAATGGAGTGTGGC-CTTT----CCCCCAGCTCGGAGCTCAGTG----GGTTTTTAAAGAACTGTGTGTATCTCTTTGGCCAGACCAGCGACTGGGATCTTCAGCCTCTCTGCAGAAAATGAGCTGCAGGCTCGGGATTTCGTTAAGATGCAGGAGCATTCCTTCTGGACCAATGACTCACTCATTCAGCCCCTTCTTTCCCGCTTCTCCTTGTCAGCCCTCGCCTGGCTGAGCTCATATTTTACATTCAGCACCTCTAGTTACCCAGAAATTGCATGCAAAATTGTGAAATAGAAAAGCAGTGGGCCATG-GGCTCCATCAGCTCTGCCTGGCGTTGCATCATCCTTGACTTGCAATGCTCAGAGGCTGGGCTAGGAGATTTGCTTACAGAGAGCCTG----------------AAGGTCCCAGGGACCTTCCCAAAGTTGCGATTTGAATG----CATGCTCTTAGCACACATGCTGTGTAACTGGGGCAGATCTGTAGGAATGAGTGGAACTGAAATCAGACCTTAGAAAGTCACAGTGAATAAGAAAATTGCCAGAATGGAATGCAGATATA----CCTACTG-GTTACTGTCCTGTATGGAGCAGCTGTGTGGGATTTGACTGTGTTTTACTAATAGGAGCCTTGTTGGGCCCAGTGCTTCATAACTAGCTCTGTCTGTCAGGAATCCCCCATGGTATCCTGCTTGTGATTCATGCTATCCAGAGTCCAGGGCAAGGAGTTCTAAAACCTTATCAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226418114 1681 - 229942017 ATTGCTGAGGGATCCTTCCAGTGGTCACA-TTTGCCCGTAGCCCTCCTGAACCCTTGAGTCTGCAGA----AAACCTCTAGCTGGACAGCTTCTGGGTAGAGAAACAGGCCATGAAGAGCCTC-CTAGGTGTGCACCATGT-------------------GGCTGCGCTCCGTGACGAGGGAAAAACAGGAATATCTGTCTGCTGTGATCA--CGTGTAGTGGTCACGGTGAGTGATGACGGGGC-T-GCTCCTCGTCAGCCTCCAGTCAGGCTGTGT----GGCA----GCGATTGCCTCCATGTTGATG----GAG----TGTCTGTGCTGTTTGGGAGCG--AGGCTCTGCCTCTCTCGGTGAGTGTCTCACAGTTCCTTTCTCCCTCAGTCCCATGATGCCGTCCAGAACGAGGTGCTGAACTGATTAATGAGCAGGACATAAAGACAACTGCTGCCCAGAGCAACAGCTGTCCCACTCCATCCGCGGAA----TAAACAAACAGGGCAGAGCGGGGTCCCGACCAGTGGGGACTTGGGTGCAGGAAATGCCAGTCTCTTCTTGCTTGAATCAGGGTGTCA---GGCCTTTCTGGCCACCACTCAGCCTGTTCCTTTAGCTTTCTGGGTCCCATTCCCTGCGGGTCTACCCTTGGGAGTGAAAT-AGTGACCGTCCCTTTGACCCCGAGAGCCGGGGAGAAGGCCGTGCCTGTTAACAGCTGCCTGGACCCT-----CTCTG-GAGAGCAGCAGGG-AGAGGCGGGGCTGGAGGAGATGTTGCCAAGAACCTAAGGGCGTTAGTGACAAAAGCAAGAACTCCTGGCCACAAGTCCGAGGGACTTTCTTGATCACAAGTGGTATCTCCTAAACACTTTAATTATAGCAGATTAAGCAGGAAGTAGAGTGCTGGACTAAAGGAATAATGATACAAAGGAGGTGAAGCAGAAAAATTCAATTTCCTTCCTTTAAGGGA-AAA----------AAATGTCCATTTACTTAGATGCATTGCAAAGAAAAGAATGGAGTGTGGC-CTTT----CCCCCAACTCGGAGCTCAGTG----GGTTTTTAAAGAACTGTGTGTATCTCTTTGGCCAGACCAGCGACTGGGATCTTCAGCCTCTCTGCAGAAAATGAGCTGCAGGCTCAGGATTTCGTTAAGATGCAGGAGCATTCCTTCTGGACCAATGACTCACTCATTCAGCCCCTTCTTTCCCGCTTCTCCTTGTCAGCCCTCGCCTGGCTTAGCTCATATTTTACATTCAGCACCTCTAGTTACCCAGAAATTGCATGCAAAATTGTGAAATAGAAAAGCAGTGGGCCATG-GGCTCCATCAGCTCTACCTGGCATTGCATCATCCTTGACTTGCAATGCTCAGAGGCTGGGCTAGGAGATTTGCTTACAGAAAGCATG----------------AAGGTCCCAGGGACCTTCCCAAAGTTGCGATTTGAATG----CATGCTCTTAGCACACATGCTGTGTAACTGGAGCAGATCTATAGGAATGAATGGAACTGAAATCAGACCTTAGAAAGTCACAGTGAACAAGAAAATTGCCAGAATGGAATGCAGATACA----CCTACTG-GTTACCGTTCTGTATGTAGCAGCTGTGTGGGATTTGACTGTGTTTTACTAATAGGAGCCTTGTTGGGCTCAGTGCTTCATAACTAGCTCTGTCTGTCGGGAATTCCCCACAGTATCCTGCTTGTGATTCACGTTATCCAGAGTCCAGGGCAAGGAGTTCTAAAACCTTATCAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140301175 1679 - 143122389 ATTGCTGAGGGATCCTTCCAGTGGTCACA-TTTGCCCGTAGCCCTCCTGAACCCTTGAGTCTGCAGA----AAATCTCTAGCTGGACAGCTTCTGGGTAGAGAAACAGGCCATGAAGAGCCTC-CTAGGTGTGCACCATGT-------------------GGCTGCGCTCCGTGATGAGGGAAAAACAGGAA----TGTCTGCTGTGATCA--CATGTAGTGGTCATGATGAGTGATGACGGGGC-T-GCTCCTCATCAGACTCTAGTCAGGCTGTGT----GGCA----GCGATTGCCTCCATGTTGATG----GAG----AGTCTGTGCAGTTTGGGAGCG--AGGCTCTGCCTCTCTCGGTGAGTGTCTCACAGTTCCTTTCTCCCTCAGTCCCATGATGCCATCCAGAATGAGGTGCTGAACTGATTAATGAGCAGGACATAAAGACAACTGCTGCCCAGAGCAACAGCTGTCCCACTCCATCCGCGGAA----TAAACAAACAGGGCAGAGCGAGGCCCCGACTAGTGGGGACTTGGGTGCAGGAAATGCCAGTCTCTTCTTGCTTGAATCGGGGTGTCAGGGGGCCTTCCTGGCCACCACTCAGGCTGTTCCTTTAGCTTTCTGGATCCCATTCCCTGCGGGTCTACCCTTGGGAGTGAAAT-AGTGACAGTCCCTCTGACCCCAAGAGCTGGGGAGAAGGCCGTGCCTGTTAACAGCTGCCTGGACCCT-----CCCTG-GAGAGCAGCAGGG-AGAGGCGGGGCTGGAGGAGATGTTGCCAAGAACCTAAGGGCGTTAGTGACAAAAGCAAGAACTCCTGGCAAGAAGTCCGAGGGACTTTCTTGATCACAAGTGGTATCTCCTAAGCACTTTAATTATAGCAGATTAAGCAGGAAGTGGAGTGCTGGACTAAAGGAATAATGATACAAAGGAGGTGAAGCAG-AAAACTCAATTTCCTTCTTTTAAGGGA-AAA----------AAATGTCCATTTATTTAGATGCATTGCAAAGAAAAGAATGGAGTGTGGT-CTTT----CCCCCAGCTTGGAGCTCAATG----GGTTTTTAAAGAACTGTGTGTATCTCTTTGGCCAGACCAGCGACTGGGATCTTCAGCCTCTCTGCGGAAAATGAGCCGCAGGCTCGGGATTTCGTTAAGATGCAGGAGCATTCCTTCTGGACCAGTGACTCACTCATTCAGCCCCTTCTTTCCTGCTTCTCCTTGTCAGCCCTCGCCTGGCTTAGCTCATATTTTACATTCAGCACCTCTAGTTACCCAGAAATTGCATGTAAAATTGTGAAATAGAAAAGCAGTGGGCCATG-GGCTCCATCAGCTCTGCCTGGTGTTGCATCATCCTTGACTTGCAATGCTCAGAGGCTGGGCTAGGAGATTTGCTTACAGAAAGCCTG----------------AAGGCCCCAGGGACCTTCCCAAAGTTGCGATTTGAATG----CATGCTCTTAGCACACATGCTGTGTAACTGGAGCAGATCTATAGGAATGAATGGAACTGAAATCAGACCTTAGAAAGTCACAGTGAGTAAGAAAATTGCCAGAATGGAATGCAGATACA----CCTACTG-GTTACCGTCCTGTATGTAGCAGCTGTGTGGGATTTGACTGTGTTTTACTAACAGGAGCCTTGTTGGGTCCAGTGCTTAATAACTAGCTCTGTCTGTCGGGAATCCCCCACAGTATCCTGCTTGTGATTCACGCTATCCAGAGTCCAGGGCAAGGAGTTCTAAAACCTTATCAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17012428 1672 - 229590362 ATTGCTGAGGGATCCTTCCCGTGGTCACA-TTTGCCTGTAGCCCTCCTGAACCCTAGAGTCTGCAGA----CAACCTCTAGCCGGACAGCTTCTGGGCGGAGAAACAGGCCATGAAGAGCCTC-CTGGGTGTGCA-CATGT-------------------GGCTGCGCTCTGTGATGAGGGAAAAGCAGGAGTATCTGTCTGCCGT-ATCA--CGTGTAGCAGTCACGGCGAGTGATGACAGGGC-C-GCTCCTCGTTAGCCTCCAATCAGGCTGTGT----GGCA----GCGATCGCCTCCATGTTGATA----GAG----AGTCCGTGTAGTTTGGGAGCG--AGGCTCGGCCTCTTTCGGTGAGTGTCTCACAGTTCCTTTCTCCCTCAATCCCGCAATGCCATCCAGAACGAGGTGCTGAACTGATTAATCAGCAGGACATAAAGACAACTGCTGCCCAAAGCAACGGTTGTCCCGCTCCATCCACGGAATAATTAAACAAACAGGGCACAGCGGGGTTCCCACCAGTGAGGACTTGGGTGCAGGAAATGCCAGTCTCTT----CTTGAATCCAGGTGTCA---AGCCATCCTGGCCACCACTCAGGCTGTTCCTTTAGCTTTCTGGATCCCATTCCCTGCCGGTTTATGCTTGGGAGTGAAAT-AGTGACTGTCCCTTTGACCCCGAGAGCTGGGGAGAAGGCCGTGCATGTTAACAGCTGCCTGGACCCT-----CTCTG-GAGTGCGGCAGGG-AGAGGCGGGGCAGGAGTAGATGTTGCCAAGAACCTAAGGGTGTTAGTGACAAAAGCAAGAACTCCTGGCAAGAAGTCCGAGGGACTTTCTTGATCGCAAGTGGCATCTCCTAAGCACTTTAATTACAGCGGATTAAGCAGGAAGTGGAGTGCTGGACTAAAGGAATAATGATACAAAGGAGGTGAAGCAGAAAAACTCGATTTCTTTCCTTTAAAGGG-ATA----------AAATGTCCATTTATTTAGATGAATTGCAAAGAAAAGAATGGAGCGTGGC-CTTC----CCCCCAGCTCGGAGCTCAATG----GGTTTTTAAAGAAC--TGGGTATCTCTTTGGCCAGAACAGCAACTGGGATCTTCAGCCTCTCTGCAGAAAATGAGCCGTGGGCTCGGGATTTTGTTAAGCCGCAGGAGCATTCCTTCTGGACCGATG----ACTCATTCAGCCCCTTCTTTCCCGCTTCTCCTTGTCGGCCCTCGCCTGGCTTAGCTCATATTTTACATTCAGCACCTCTAGTTACCCAGAAATTGCATGCAAAATTGTGAAATAGAAAAGCAGTGGGCCATG-TGCTCCATCAGCTCTGCCTGGCATTGCATCATCCTTGACTTGC-ATGCTCAGGGGCTGGGCTAGGAGATTTGCTTACAGAAAGCCTG----------------AAGGTCCCACGGACCTTCCACAAGTTGCGATTTGAATA----CACGCTCGTAGCACACATGCTGTGTAACTGGGGCAGATCTGTAGGAATGAATGGAACTGAAATCAGACCTTAGAAAGTCACGGTGAACAAGAAAATTGCCAGAATGGAATGCAGATACA----CCTAGTG-GTTACTGTCCTGTATGTAGCGGCTGTGTGAGATTTGACTGTGTTTTACTAAGAGGAGCCTTGTTGGGCCCAGTGCTTAATAACCAGCTCTGCCTGTCAGGAATCCCCCACAGTATCCTGTTTGTGATTCACGCTATGCAGAGTCCAGGGCAAGGAGTTTTAAAACCTTATCAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223777204 1672 - 227556264 ATTGCTGAGGGATCCTTCCCGTGGTCACA-TTTGCCTGTAGCCCTCCTGAGCCCTAGAGTCTGCAGA----CAACCTCTAGCCGGACAGCTTCTGGGCGGAGAAACAGGCCATGAAGAGCCTC-CTGGGTGTGCA-CATGT-------------------GGCTGCGCTCTGTGATGAGGGAAAAGCAGGAGTATCTGTCTGCCGT-ATCA--CGTGTAGCGGTCACGGCGAGTGATGACAGGGC-C-GCTCCTCGTTAGCCTCCAATCAGGCTGTGT----GGCA----GCGATCGCCTCCATGTTGATA----GAG----AGTCCGTGTAGTTTGGGAGCG--AGGCTCGGCCTCTTTCGGTGAGTGTCTCACAGTTCCTTTCTCCCTCAATCCCGCAATGCCATCCAGAACGAGGTGCTGAACTGATTAATCAGCAGGACATAAAGACAACTGCTGCCCAAAGCAACGGTTGTCCCGCTCCATCCACGGAATAATTAAACAAACAGGGCACAGCGGGGTTCCCACCAGTGAGGACTTGGGTGCAGGAAATGCCAGTCTCTT----CTTGAATCCAGGTGTCA---AGCCATCCTGGCCACCACTCAGGCTGTTCCTTTAGCTTTCTGGATCCCATTCCCTGCCGGTTTATGCTTGGGAGTGAAAT-AGTGACTGTCCCTTTGACCCCGAGAGCTGGGGAGAAGGCCATGCATGTTAACAGCTGCCTGGACCCT-----CTCTG-GAGTGCGGCAGGG-AGAGGCGGGGCAGGAGTAGATGTTGCCAAGAACCTAAGGGTGTTAGTGACAAAAGCAAGAACTCCTGGCAAGAAGTCCGAGGGACTTTCTTGATCGCAAGTGGCATCTCCTAAGCACTTTAATTACAGCGGATTAAGCAGGAAGTGGAGTGCTGGACTAAAGGAATAATGAAACAAAGGAGGTGAAGCAGAAAAACTCAATTTCCTTCCTTTAAAGGG-AAA----------AAATGTCCATTTATTTAGATGAATTGCAAAGAAAAGAATGGAGCGTGGC-CTTC----CCCCCAGCTCGGAGCTCAATG----GGTTTTTAAAGAAC--TGGGTATCTCTTTGGCCAGAACAGCAACTGGGATCTTCAGCCTCTCTGCAGAAAATGAGCCGCGGGCTCGGGATTTTGTTAAGCCGCAGGAGCATTCCTTCTGGACCGATG----ACTCATTCAGCCCCTTCTTTCCCGCTTCTCCTTGTCGGCCCTCGCCTGGCTTAGCTCATATTTTACATTCAGCACCTCTAGTTACCCAGAAATTGCATGCAAAATTGTGAAATAGAAAAGCAGTGGGCCATG-TGCTCCATCAGCTCTGCCTGGCATTGCATCATCCTTGACTTGC-ATGCTCAGGGGCTGGGCTAGGAGATTTGCTTACAGAAAGCCTG----------------AAGGTCCCACGGACCTTCCACAAGTTGCGATTTGAATA----CACGCTCGTAGCACACATGCTGTGTAACTGGGGCAGATCTGTAGGAATGAATGGAACTGAAATCAGACCTTAGAAAGTCACGGTGAACAAGAAAATTGCCAGAATGGAATGCAGATACA----CCTAGTG-GTTACTGTCCTGTACGTAGCGGCTGTGTGAGATTTGACTGTGTTTTACTAAGAGGAGCCTTGTTGGGCCCAGTGCTTAATAACCAGCTCTGCCTGTCGGGAATCCCCCACAGTATCCTGTTTGTGATTCACGCTATGCAGAGTCCAGGGCAAGGAGTTTTAAAACCTTATCAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16827378 1680 - 220367699 ATTGCTGAGGGATCCTTCCCGTGGTCACA-TTTGCCTGTAGCCCTCCTGAACCCTAGAGTCTGCAGA----CAACCTCTAGCCGGACAGCTTCTGGGTGGAGAAACAGGCCATGAAGAGCCTC-CTGGGTGTGCA-CATGT-------------------GGCTGCGCTCTGTGATGAGGGAAAAGCAGGAGTATCTGTCTGCCGT-ATCA--CATGTAGCAGTCACGGCGAGTGATGACGGGGC-C-GCTCCTCGTTAGCCTCCAATCAGGCTGTGT----GGCA----GCGATCGCCTCCATGTTGATA----GAG----AGTCCGTGTAGTTTGGGAGCA--AGGCTCGGCCTCTTTTGGTGAGTGTCTCACAGTTCCTTTCTCCCTCAATCCCGCGATGCCATCCAGAACGAGGTGCTGAACTGATTAATCAGCAGGACATAAAGACAACTGCTGCCCAAAGCAACGGTTGTCCCGCTCCATCCACGGAATAATTAAACAAACAGGGCACAGCGGGGTCCCCACCAGTGAGGACTTGGGTGCAGGAAATGCCAGTCTCTTCTTGCTTGAATCCAGGTGTCA---AGCCATCCTGGCCACCACTCAGGCTGTTCCTTTAGCTTTCTGGATCCCATTCCCTGCAGGTTTATGCTTGGGCGTGAAAT-AGTGACTGTCCCTTTGACCCCGAGAGCTGGGGAGAAGGCCGTGCATGTTAACAGCTGCCCGGACCCT-----CTCTG-GAGTGCGGCAGGG-AGAGGCGGGGCAGGAGGAGATGTTGCCAAGAACCTAAGGGCGTTAGTGACAAAAGCAAGAACTCCTGGCAAGAAGTCCGAGGGACTTTCTTGATCGCAAGTGGCATCTCCTAAGCACTTTAATTACAGCGGATTAAGCAGGAAGTGGAGTGCTGCACTAAAGGAATAATGATACAAAGGAGGTGAAGCAGAAAAACtcaatttccttcctttaaaggg-aaa----------aaatgtcCATTTATTTAGATGAATTGCAAAGAAAAGAATGGAGCGTGGC-CTTC----CCCCCAGCTCGGAGCTCAATG----GGTTTTTAAAGAAC--TGGGTATCTCTTTGGCCAGAACAGCAACTGGGATCTTCAGCCTCTCTGCAGAAAATGAGCCGTGGGCTCGGGATTTTGTTAAGCTGCAGGAGCATTCCTTCTGGACCGATGACTCACTCATTCAGCCCCTTCTTTCCCGCTTCTCCTTGTCGGCCCTCGCCTGGCTTAGCTCATATTTTACATTCAGCACCTCTAGCTACCCAGAAATTGCATGCAAAATTGTGAAATAGAAAAGCAGTGGGCCATG-TGCTCCATCAGCTCCGTCTGGCATTGCATCATCCTTGACTTGC-ATGCTCAGGGGCTGGGCTAGGAGATTTGCTTACAGAAAGCCTG----------------AAGGTCCCACGGACCTTCCCCAAGTTGCGATTTGAATA----CACGCTCGTAGCACACATGCTGTGTAACTGGGGCAGATCTGTAGGAATGAATGGAACTGAAATCAGACCTTAGAAAGTCACGGTGAACAAGAAAATTGCCAGAATGGAATGCAGATACA----CCTAGTG-GTTACTGTCCTGTATGTAGCGGCTGTGTGAGATTTGACTGTGTTTTACTAAGAGGAGCCTTGTTGGGCCCAGTGCTTAATAACCAGCTCTGCCTGTCAGGAATCCCCCACAGTATCCTGTTTGTGATTCACGCTATGCAGAGTCCAGGGCAAGGAGTTTTAAAACCTTAtcat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82626897 1678 + 85787240 ATTGCTGAGGGATCCTTCCCGTGGTCACA-TTTGCCTGTAGCCCTCCTGAACCCTAGAGTCTGCAGA-----AACCTCTAGCTGGACAGCTTCTGGGTGGAGAAACAGGCCATGAAGAGCCTC-CTGGGTGTGCA-CATGT-------------------GACTGCGCTCTGTGATGAGGGAAAAGCAGGAGTATCTGTCTGCCGTGATCA--CGTGTAGCAGTCACGGTGAGTGATGACAGGGC-C-GCTCCTCGTTAGCCTCCAATCAGGCTGTGT----GGCA----GCGATCACCTCCATGTTGATA----GAG----AGTGCGTGTAGTTTGGGAGCG--AGACTCGGCCTCTTTCGGTGAGTGTCTCACAGTTCCTTTCTCCCTCAATCCCGCGATGCCGTCCAGAATGAGGTGCTGAACTGATTAATCAGCAGGACATAAAGACAACTGCTGCCCAAAGCAACGGTTGTCCCGCTCCATCCACGGAATAATTAAACAAACAGGGCACAGCAGGGTCCCCACCAGTGAGGACTTGGGTGCAGGAAATGCCCGTCTCTTCTTGCTTGAATCCAGGTGTCA---GGCCATCCTGGCTACCACTCAGGCTGTTCCTTTAGCTTTCTGGATCCCATTCCCTGCAGGTTTCTGCTTGGGAGTGAAAT-AGTGACTGTCCCTTTGACCCCGAGAGCTGGGGAGAAGGCCGTGCATGTTAACAGCTGCCTGGACCCT-----CTCTG-GAGTGCGGCAGGG-AGAGGCAGGGCAGGCGTAGATGTTGCCAAGAACCTAAGGGCGTTAGTGACAAAAGCAAGAACTCCTGGCAAGAAGTCCAAGGGACTTTCTTGATCACAAGTGGCATCTCCTAAGCACTTTAATTATAGCGGATTAAGCAGGAAGTGGAATGCTGGACTAAAGGAATAATGATACAAAGGAGGTGAAGCAGAAAAACTCAATTTCCTTCCTTTAAAGGG-AAA----------AAATGTCCATTTATTTAGATGAATTGCAAAGAACAGAATGGAGCGTGGC-CTTC----CCCCCAGCTCGGAGCTCAATG----GGTTTTTAAAGAAC--TGTGTATCTCTTTGGCCAGAACAGCAACTGGGATCTTCAGCCTCTCTGCAGAAAATGAGCCGCAGGCTCAGGATTTCGTTAAGCTGCAGGAGCATTCCTTCTGGACCGATGACTCACTCATGCAGCCCCTTCTTTCCCGCTTCTCCTTGTCGGCCCTCGCCTGGCTTAGCTCATATTTTACATTCAGCACCTCTGGTTACCCAGAAATTGCATGCAAAATTGTGAAATAGAAAAGCAGTGGGCCATA-TGCTCCATCAGCTGTGCTTGGCATTGCATCATCCTTGACTTGC-ATGCTCAGGGGCTGGGCTAGGAGATTTGCTTACAGAAAGCCTG----------------AAGGTCCCACGGACCTTCCACAAGTTGCGATTTGAATG----CACGCTCGTAGCACACATGCTGTGTAACTGGAGCAGATCTGTAGGAATGAATGGAACTGAAATCAGACCTTAGAAAGTCACAGTGAACAAGAAAATTGCCAGAATGGAATGCAGATACA----CCTAGTG-GTTACTGTCCTGTACGTAGCGACTGTGTGAGATTTGACTGTGTTTTACTAAGAGGAGCCTTGTTGGGCCCAGTGCTTAATAACCAGCACTGTCTGTCGGGAATCCCCCACAGTATC--GTTTGTGATTCACGCTATGCAGAGTCCAGGGCAAGGAGTTTTAAAACCTTATCAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14337319 1660 - 49578535 ATGGCTGAGGGATCCTTCCAGTGGTCACGTTTTGCCCATAGCCCTCCTGAATGCTGGAGTCTGCAGA----AAACTTCCAGCCGAATAGCTTCTGGGTAGAGAAACAGGCCAACAAGACTCTC-CTAGGCGTGCAGCACGG-------------------GGCTGTGCTCCATGACGAGGGACAAACAGGAATATCCGTGTGCGGTGATCA--TGGATAGCAGTCGAGGGGAGTGATTACA-GGC-C-GCTCCTC---AGACTCCAGTCGGGCTGTGTGGCAGGCA----GCGATTGCCTCCGTGTTGACGGAGTGAG----TGTCTGTGCGGTTCGGGAGCG--AGGTGCTGCCTCTCTCTGTGCGTGTCTCACAGTTCCTTTCTCCCTCAGTCCCGTGATGCCGTCCAGAACAA---GCTGAACTGATGAATGAGCAGGACATAAAGATAGCTGCTGC-------------TGTCCCACTCCATCCGCGGATTCATTAGACAAACAGGGCAGAGTGGGGTCCCCACCAGTGGGAAGTTGGGTGCAGGAGATGCCAGTCTCTT---GCTGGAATCAGGGTGTCA---GCCCTTCCTGGCCACCACTCAGACTGTTCCTATTGCTTTCTGGATCCCATTCCCTGCAGGTCTACCCTGGGGAGTGACAT-AGTGACTGTCACTTCCACCCCGAGAGCTGGGGAGAAGGCGGTGCATGTTAGTAACTGCCTGGTCTCT-----CTATGTAAGAGCAGCAGGG-AGAGGCGGGGCTGGAGCAGCCGTTGCCAAGAACCTAAGAGCGTTAGTGACAAAACCAAGAACTCCTGGCGAGGGGTCCGAGGGGCCTTCTGGATCACAAGTGGTGTCTCCTCAGCACTTTAATTACAGCGGATTAAGCAGGAAGTGGAGTGCTGGACTAAAGGAATAATGAGACAAAGGAGGTGAAGCAGAAAAACTCAATTTCCTTCCTTTAAAGGGAAAA----------AAATGTCCATTTAGTTAGATGAATTGCAAAGAAAAGAATAGAGTGTGGC-ATTT----CCCCCAGCTTGGAGCTCAATG----GGTTTTTAAAGAAC--TGTGTATCTCTTTGGCCAGACCAGTGACCGGGATCCTCAGCCTCTCTACAGAAAATGAGCCACAGGCTTGGGATTTCATTAAGATGCCAGAGCATTCCTTCTGGACAAATGACTCACTAATTCAG-CCCTTCTTGCCCGTTTCTCC-TGTAGGCCCTTGCCTGGCTTAGCTCATATTTTACATTCAGCACCTCTAGTTACCCAGAAATTGCATGCAGGCTTGTGAAATAGAAAAGCAGTGGGCCGTG--GCCCCATCAGTCCTGCCTGGCATTGCGTCATCCCTGACTTGCAATGCTCGGAGGCTAGACTGGGAGATTTGCTCACAGAAAGCCTG-----------------AGGTCCCAGGTGCCTTCCAAAAGTGGAGGTTTGAATA----CACACTCTTAGCACACATGCTGTGTAACTGAGGCAAAGCTACAGAAATGAATGGAACTGAAATCAGAC--TATAAAAGCACAGTGAACAAGGAAGTTGCCAGAAT-GAATGCAGATAAA----CCTAGTG-GTTATTGTCCTGTGCGTAGCGGCTGTGTGGGATTTGGC--TGTTTTACTAGCAGGAGCCCTG-GGGGCCCGGTGCTTAATAACTAGCTCTGCCCGCCAGGGATCCCCCACGGTATCCTGCTTGTGATTGATGCTATCCAGAGTCCAGGGCAAGGGGTTCT-AAACCTTATCAT i calJac3.chr19 I 303 C 0 s mm10.chr1 178860485 1628 + 195471971 ATTGGTAAGACACCCTTTGAACTGTGA-A-CCTGCTCAAAGCCCCCCTGAGTGTCA----TTGCTGAACCCAGGCCTCCAGGCCAAGAGCTACTGGGGAGAGGAACCGACAAT--AGAGTCTCACTAGGTCTGCACCATG-------------------------------ATGAATAGCGACCAACAATTGTGTCTG-CTGGCATGACCATGTGTGTAACAGTGATGGCGAGGAACTGCAGAGC-CTGCTCCTCATTAGCCTTCAAT-AAGCTGGGT----GGCAGCCGGCTATCACCTTCTCATTCATG----AAG----GGGGTGTGCAACTTGAGAGAGTTATGTTAGGCCCCTCTGAATGAGTGTCTCACAACCCCTTTCTTTCCC-GTCTCAGGATGCGGTCCACCTGGAGATGCTGAAAAGATTAATGAGCAAGACATAAAGACAACAGCTGCCCTAAGCAACAGCTGTCTCACACCAACCAT-GAGTAATTAGACAAATGAGGCAAAGTG-GATCCCAACCAGAGGGGACTTTGGTTCACG--CTGACAGTCTCCCCCCTC-----TCTGGGTGTCC---ACCCCTCCTTTCCTACACTCAGACTGTCCCTTTAGCTGTCTGGATGCCATTGTCC-CAGGTCTGTTCTTGGA---------AGTGACTGTGGTCTTGACCCTGAGGGCCGAG--CTAGGCTGTGAGTGTGGATGGCAGCCCTCCCTCC-----TCTCC-TGGAGGAACAGAGCAGAGGGCAGGGTGGA--AGATGTTGCCAAGAATCCAACAGTTTTTGTAACAGAAGCAAGAGCTCCTGGCAAGAAGTCCGAGGAACTTTCTTGATCATAAGTGGTGTCTCTTAAGCTCTTTAATTACAGAGGATTAAGCAGGAAGTGGAGTGCAGGACTAAAGGAATAATGGCA-AAAGGAGGCGAAGCAGAAAAACCCAATTTCCTTTCTGGAAGGGG-GGA----------AATCCTCCATTTATTTAAGTGACTTGCACAGAGAAGAGCGATATGTAGTGTTTT----CCCCTAGCTCTAAGTTCAATGGTTTGGTTTTTTTAGAAC--TGTGTATCTCCTTAG-CAGGACATAAGGCAGGGTCTTCAGCTCATCTGCAGAAAAGGGACCGAGTGC-------TTCATTAAGATGCAGGCATATGCTTCCCCTTCAAATGGCTGGCTGATCCCGTGCCCGCCTTCCTTCTTCTGCGTGTGAGCTTCTGCCTAGCCTAGCTCACATTTT-CATTCAGCAACTCTAGTTACCTAGAAATGGC-TGCAAAATTGCAAAACGGAAAGGCAGCGGGTCGTGTGGCTCCATCAGTTCTGCCTGCAGTGGCAGCACCCTTGACTTGC-ATG---------------GGGAGAGGCACTCACAGAGAGCCTG-----------------GGGGCCCAGGTACCCCTCAGAAGTCGCTGTGTGGATGGATACCTGCTTGTAGCATAC-TGCTGTGTAACTGGGACAAACCT--AGACATGAATAGAGTTAAAATCAGGCTGTAGAGAGTAATGAGGAACAAGGACA-TGCCCCAGTG----GCAGATATACGATCATAGTG-GCGATTGTCCTGTATGCAGTGGATGTGC--AACTCCAAAGTGCAGTCCTGGTAAGATCCTAGTCATAGCTTCTACATACTAACTCGCCCTACCTAT--AGAATCTGTCCTGGGGTCCTCTTTGTGCGACATGGTATCCAGAATCTGGGTCAAGGCATTCTGTAGCTTTATCAT i mm10.chr1 C 0 I 705 s canFam3.chr7 36441286 1684 + 80974532 GTCGGTGAGAGATCCTTCCCAAGGTCGTA-TTTGCCCAAAGTCTTCCTTTGCCTTAGAGTCTGAAGA----AAGCCTCCAGCAGGACAGCTTCTGGGCAGAGACATGGGCAACGAGGAGCCCC-CTAGGTGTATACAATGTTCATGTACTCCATGACTAGGGACGGACCCCATGACTAGGGATGGACAGGAATATCCAAGC-TCACGATCA--GGTGTAGCGTCAATGGTGAGCATCTGTGGGGTGC-ACCACTCACGAGTCCCAGA--AGGCCATGT----GGCATCCAGACATGTCTTCTGCCTTGATG----GAGGGACTGTCTGCATGGCTCGGGAGCC--AGGGTTCACCTCTCTCAACCA----CTCAGAGTCCCTC-----------------ATGCCATCCAGGAGGAGGTGCTGCCATGATTAATGAGTAAGACACAAAGGCCACTGCTGCCCAGAGCAAGAGCTGTCTC-CACCATCCACTAGGCAATTACATAAATAAGGCAAAGTGGGGTCTTTACCACTGAGGGCTTGGGTTGAGGGAGTGCCAGTCTCCTGTCACTTGAACGGGGGTGTTG---GGCCCTCCCTCCCCACACTCAGACTGTGCCC-TGGCTTTCTAGACCTCATTCT-GACAGTTCTGACTTTGGGATTGAAATCAGTCACTGTCCCCAGTGCCGCAAGAGCCGGG-AGGAGGCCGTGGACATTCCAAACTGCAGGGGCCCTCTACCCTCCC-CAGGGTAGCTGG--AGAGGAAGGGCTGAAGCAGGTGCTGCCAGAAACCCACCGGTGTTTGCCACAAAATCGAGAACTCCTGGCAAGATGTCCTGGGGATGGTCTTGATCCTAAGTGGAATCTGCAAAGCACTTTAATTACAGAGGATTAAGCAGGAAGTGGAGTGCTGGACTGAAGGAATAATGACACCAAGGAAGTCAAGCAGAAAAACCCAATTTCTTTCCTTTTATGGG-GGGTGGAGGTGGTGAATATCCATTTATTTAAATGAATTATAAAGGAAAGAAT-GAGAATAGT-ATTTGCCCACCCCTGTCCAGAGTTCAGGG----GGTGTTTAAAGGGC--TGTGTATCTCCTTGGCC---CCAGTGGCCGGGGTCTTCAGCCTGTCCACGGAAATGGAAATGGAGGCTTGGAACCTCATTATGATGCAGGAGCACTCCCCCTGGA--AATGACTCCCTAATTCAACC--------CCCCCTTCTCCTCGCAGGCCCTTGCCTGGCTTAGCTCATAGTTTACATTCAGCACCTCTAGTTGCCCCAAAATTGCATGCGAAATTGTGAAATAGAAAAGCAGTGGGCCATGTGACTCCATCAGTTCTGCCTGGCACCGCCTCATCCTTGGCTTGTGCCGCTCAGAGGCCGGGCTAGGGGATTTGCTTACAGAAAGCCTGcccccttccccccccccccccccccGACACCTGCCAAAAGTCGCCATCTGAATA----TGGGCCCTCGCCACACCTGCTGTGTAGCTGGGGCAGAGCTGTGGAAATGCATGGTACTGAAATAAGGTCGGAAACATTCGCAGCGAGCAAG-AAATGGCCTGCATGGAACGTAGACAGA----TGCGGTGCTTTATTGTCGTGTGTGCAGTGAC-----------------TGTTTTAGCGATTGGATCCTG--TGAGACCGGAGCCTAATACCTAGCTGGGTCTGC--AATAGTCGCCGTGGCGTCCTGTTTGTGATATACAGTGCTCAGCATCCAGGGCAAGGAGTTCTAAAACCTTATCAT i canFam3.chr7 C 0 I 70 a score=144603.000000 s hg38.chr1_KI270759v1_alt 294344 55 + 425601 Gttttgttttgtttt----------gatacagagtttcactcttgttgcccaggctggagtgtaa s panTro4.chr1 225050793 55 + 228333871 Gttttgctttgtttt----------gatacagagtttcactcttgttgcccaggctggagtgtaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226419795 55 - 229942017 GTTCTGttttgtttc----------gatacagagtttcgctcttgttgcccaggctggagtgtaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140302854 55 - 143122389 Gttttgttttgtttc----------gatacggaatttcactgttgttgcccaggctggagtgtaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17014100 55 - 229590362 Gttttgttttgtttt----------gagatggagttttgctcttgttgcccaggctggagtgcaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223778876 55 - 227556264 Gttttgttttgtttt----------gagatggagttttgctcttgttgcccaggctggagtgcaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16829058 55 - 220367699 gtgttgttttgtttt----------gagatggagttttgctcttgttgcccaggctggagtgcaa i papAnu2.chr1 C 0 I 278 s chlSab2.chr25 82628575 55 + 85787240 Gttttgttttgtttt----------gagatggagttttgctcttgttgcccaggctggagtgcaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14338979 64 - 49578535 GTtttgttttgttttatgttttgaaaagacaaggtctc-cccctgtcacccaggctggagtgcag i calJac3.chr19 C 0 C 0 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I a score=53759.000000 s hg38.chr1_KI270759v1_alt 294399 21 + 425601 tggcgtgatcttggctcacca s panTro4.chr1 225050848 21 + 228333871 tggcgtgatctcggctcacca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226419850 21 - 229942017 tggcgcgatctcggctcacca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140302909 21 - 143122389 tggcgcgatctcggctcacca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17014155 21 - 229590362 tggcgcaatcttgactcacca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223778931 21 - 227556264 tggcgcaatcttgactcacca i macFas5.chr1 C 0 I 273 s papAnu2.chr1 16829391 21 - 220367699 tggcgagatctcggctcactg i papAnu2.chr1 I 278 C 0 s chlSab2.chr25 82628630 21 + 85787240 tggcgcaatctcgactcacca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14339043 21 - 49578535 tggcatgatcatagcttactg i calJac3.chr19 C 0 C 0 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I a score=5909.000000 s hg38.chr1_KI270759v1_alt 294420 4 + 425601 caac s panTro4.chr1 225050869 4 + 228333871 caac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226419871 4 - 229942017 caac i ponAbe2.chr1 C 0 I 295 s nomLeu3.chr5 140302930 4 - 143122389 caac i nomLeu3.chr5 C 0 I 278 s rheMac3.chr1 17014176 3 - 229590362 -caa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223779225 4 - 227556264 caag i macFas5.chr1 I 273 C 0 s papAnu2.chr1 16829412 4 - 220367699 caag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82628651 4 + 85787240 caac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14339064 4 - 49578535 taac i calJac3.chr19 C 0 C 0 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I a score=26972.000000 s hg38.chr1_KI270759v1_alt 294424 12 + 425601 ctccgcttcccg s panTro4.chr1 225050873 12 + 228333871 ctccgcttcccg i panTro4.chr1 C 0 I 280 s ponAbe2.chr1 226420170 12 - 229942017 ctccgcctccca i ponAbe2.chr1 I 295 C 0 s nomLeu3.chr5 140303212 12 - 143122389 ctctgcctcccg i nomLeu3.chr5 I 278 C 0 s rheMac3.chr1 17014179 12 - 229590362 ctctgcctcctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223779229 12 - 227556264 gtccgcctccca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16829416 12 - 220367699 ctccgcctccca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82628655 12 + 85787240 ctccgcctcctg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14339068 12 - 49578535 cttgaactcctg i calJac3.chr19 C 0 C 0 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I a score=125827.000000 s hg38.chr1_KI270759v1_alt 294436 50 + 425601 ggttcacgccattcttctgcctcagcctcccgagtagctggga-ctacagg s panTro4.chr1 225051165 50 + 228333871 ggttcacgccattcttctgcctcagcctcctgagtagctggga-ctacagg i panTro4.chr1 I 280 C 0 s ponAbe2.chr1 226420182 50 - 229942017 ggttcacaccattctcctgcctcagcctcccgagtaactggga-ctacagg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140303224 50 - 143122389 ggtttacgcaattctcctgcctcagactctcgagtagctggga-ctacagg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17014191 50 - 229590362 ggttcaagtgattctcctgcctcagcctcctgagtagctggga-ttacagg i rheMac3.chr1 C 0 M 1213 s macFas5.chr1 223779241 50 - 227556264 ggttcaagcccttctcctgcctcagcctccccagtagatggga-ctacagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16829428 50 - 220367699 ggttcaagcccttctcctgcctcagcctccccagtagatggga-ctacagg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82628667 50 + 85787240 ggttcaagcgattctcctgcctcagcctcctgagcagctggga-ttacagg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14339080 51 - 49578535 agctcaggtgaccctgctacctcagcctcccaagcggctgggacctgtagg i calJac3.chr19 C 0 C 0 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I a score=19577.000000 s hg38.chr1_KI270759v1_alt 294486 13 + 425601 cgcccgccaccat s panTro4.chr1 225051215 13 + 228333871 cgcccgccaccac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226420232 13 - 229942017 cgcctgccaccac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140303274 13 - 143122389 ggcccgccaccac i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223779291 13 - 227556264 tgcctgccaccac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16829478 13 - 220367699 tgcccgccaccat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82628717 13 + 85787240 catgtaccaccat i chlSab2.chr25 C 0 I 291 s calJac3.chr19 14339131 13 - 49578535 tgtgcaccatctc i calJac3.chr19 C 0 C 0 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I e rheMac3.chr1 17014241 1213 - 229590362 M a score=261014.000000 s hg38.chr1_KI270759v1_alt 294499 142 + 425601 gcccggctaattttttgta-t----ttttagtagagacggggtttcaccgtgttagccaggatggtctctatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcc s panTro4.chr1 225051228 142 + 228333871 gcccggctaattttttgta-t----tgttagtagagacagggtttcaccttgttagccaggatattctctatctcctgaccttgtgatctgcccgccttggcctcccaaagttctgggattacaggcgtgagccaccacgcctggcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226420245 142 - 229942017 acctggctaattttttgta-t----ttttagtaaagatagggtttcaccttgttagccaggatagtctctatctcctgacattgtgatctgcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccacgcctggcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140303287 142 - 143122389 gcctggctaattttttgta-t----ttttagtagagatagggtttcaccttgttagccaggattgtctctatctcctgaccttgtgatccgcccaccttggcctcccaaagtgctgggattacaggcatgagccaccacgcctggcc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223779304 142 - 227556264 gcccagctaattttttgta-t----ttttagtagagatggggttttaccgtgttagccaggatggtcttgatctcctgacctcatgatctgaccacgttggcctcccaaagtgctgggattacaggcatgagccactgagcccagcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16829491 142 - 220367699 gcccagctaaatttttgta-t----ttttagtagagatggggttttaccatgttagccaggatggtcttgatctcctgacctcatgatctgaccaccttggcctcccaaagtgctgggattacaggcatgagccactgcgcccggcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82629021 143 + 85787240 gcccggctagttttttgtatt----ttttagtagagacggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccgaccacctcggcctcccaaagtgctgggatcacaggcatgagcaagcgcgctctgcc i chlSab2.chr25 I 291 C 0 s calJac3.chr19 14339144 128 - 49578535 acctggctgtttatttaaa-taaaggttttgtagagatggggtcttgccatgctgcctaggcctgtcttgaactc-----------------ccacctctgcctcccaaagcactgggatttcatatatgggt-accacgcccagtc i calJac3.chr19 C 0 I 113 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I e rheMac3.chr1 17014241 1213 - 229590362 M a score=12156.000000 s hg38.chr1_KI270759v1_alt 294641 7 + 425601 Gttttgt s panTro4.chr1 225051370 7 + 228333871 Gttttgt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226420387 7 - 229942017 gttttgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140303429 7 - 143122389 Gttttgt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223779446 7 - 227556264 Attttgt i macFas5.chr1 C 0 I 10 s papAnu2.chr1 16829633 7 - 220367699 attttgt i papAnu2.chr1 C 0 I 30 s chlSab2.chr25 82629164 7 + 85787240 Attttgt i chlSab2.chr25 C 0 I 24 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I e calJac3.chr19 14339272 113 - 49578535 I e rheMac3.chr1 17014241 1213 - 229590362 M a score=545854.000000 s hg38.chr1_KI270759v1_alt 294648 232 + 425601 ttttgagagacaaggtctcgctctgtcacccaggctggagtgcagtggcatgatcatagctcactgtaaccttgaactcctgagctcaagtgaccctgctacctcaacctcccaagtagctggcacctgtaggtgtgcaccatcacacctggct-atttttttttaattaactttttgtagagatgggctctcaccatgttgcccaggcttgtcttgaactccCACCTCTGCC s panTro4.chr1 225051377 232 + 228333871 ttttgagagacaaggtctcgctctgtcacccaggctggagtgcagtggcatgatcatagctcactgtaaccttgaactcctgagctcaagtgaccctgctacctcaacctcccaagtagctggcacctgtaggtgtgcaccatcacacctggct-atttttttttaattaactttttgtagagatgggctctcaccatgttgcccaggcttgtcttgaactccCACCTCTGCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226420394 232 - 229942017 ttttgaaaaacaaggtctcgctctgtcacccaggccagagtacagtagcatgatcatagcttactgtaaccttgaactcctgagctcaagtgaccctgctacctcaacctcccaagtagctggcacctgtaggtgtgcaccatcacacctggat-ttttttttttaattaactttttgtagagatggggtcttgccatgttgcccaggcttgtcttgaactcTCATCTCTGCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140303436 231 - 143122389 ttttgagagacaaggtctcgctctgtcacccaggctggagtgcagtggcatgatcatagctgactgtaaccttgaactcctgagctcaagtgaccctgctacctccacctcccaagtagctggtacccgtaggtgtgcaccatcacacctggct-a-ttttttttaattaactttttgtagagatggggtctcaccatgttgcccaggcttgtcttgaactccCACCTCTGCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17015454 232 - 229590362 ttttaagagacaaggtctcgctctgtcacccaggctggagtgcagttgcgtgaccatagctcactggaacctggaactcctgagctccagtgaccctgctacctcaacctcccgagtagctggtacctgtgagtgtgcaccatcacacctggcg-atttttttttaagtatctatgtgaagagaaggggtctcgccatgttgcccaggcttgtcttgaactccCACCTCTGCC i rheMac3.chr1 M 1213 C 0 s macFas5.chr1 223779463 232 - 227556264 ttttaagagacaaggtctcgctctgtcacccaggctggagtgcagttgcgtgaccatagctcactggaacctggaactcctgagctccagtgaccctgctacctcaacctcccgagtagctggtacctgtgagtgtgcaccatcacacctggct-atttttttttaattaactttttgtagagatggggtctcgccatgttgcccaggcttgtcttgaactccCACCTCTGCC i macFas5.chr1 I 10 C 0 s papAnu2.chr1 16829670 232 - 220367699 ttttaagagacaaggtctcgctctgtcacccaggctggagtgcagttgcgtgaccatagctcactggaacctggaactcctgagctccagtgaccctgctacctcaacctcccgagtagctggtacctgtgagtgtgcaccatcacacctggct-atttttttttaattaactttctgtagagatggggtctcgccatattgcccaggcttgtcttgaactcccaccTCTGCC i papAnu2.chr1 I 30 C 0 s chlSab2.chr25 82629195 233 + 85787240 tttgaagagacaagctcttgctctgtcacccaggctggagtgcagtggcgtgaccatagctccctggaacctggaactcctgagctctagtgaccctgctacctcaacctcccgagtagctggtgcctgtgagtgtacaccatcacacctggctggttttttttcaattaactttttgtagagatggggtctcgccatgttgcccaggcttgtcttgaactccCACCTCTGCC i chlSab2.chr25 I 24 C 0 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I e calJac3.chr19 14339272 113 - 49578535 I a score=169392.000000 s hg38.chr1_KI270759v1_alt 294880 58 + 425601 CACATGCTGGGCATTCAATTCCTAGATCTCTTCCTCCCTCCTCTCTTGACTTGCCTCC s panTro4.chr1 225051609 58 + 228333871 CACATGCTGGGCATTCAATTCCTAGATCTCTTCCTCCCTCCTCTCTTGACTTGCCTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226420626 58 - 229942017 CACATGGTGGGTATTCAATTCCTGTATCTCTTCCTCCCTCCTCTCTTGACTTGCCTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140303667 57 - 143122389 CACATGGTGGGCATTCAATTCCTGTATCTCTTCCTCCCTCCTCTC-TGACCTCCCCCC i nomLeu3.chr5 C 0 I 554 s rheMac3.chr1 17015686 58 - 229590362 CACGTGGTGGGCATTCAATTCCTATATCTCTTCCTCCCTCCTCTCTTGACTTGCCTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223779695 58 - 227556264 CACGTGGTGGGCATTCAATTCCTATATCTCTTCCTCCCTCCTCTCTTGACTTGCCTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16829902 58 - 220367699 CACGTGGTGGGCATTCAATTCCTATatgtcttcctccctcctctcttgaCTTGCCTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82629428 58 + 85787240 CACGTGGTGGGCATTCAATTCCTATATGTCTTCCTCCCTCCTCTCTTGACTTGCCTCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 35239149 58 + 49578535 cacacggtgggcattccatTCCTGTGTCTCTTCCTCCCTCCTCCCTTTACTTGCCTTC i calJac3.chr19 n 113 C 0 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I a score=221591.000000 s hg38.chr1_KI270759v1_alt 294938 96 + 425601 TCCTGGATCATGATATCTTATCATTTTCCAATCACAGCGTTAATGGTAAGGCTTGAggctgggcgtggcacccatgcctgtaaacccagtgctttg s panTro4.chr1 225051667 96 + 228333871 TCCCGGATCATGATATCTTATCATTTTCCAATCACAGCGTTAATGGTAAGGCTTGAggctgggcgtggcacccatgcctgtaaacccagtgctttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226420684 96 - 229942017 TCCTGGATCATGATATCCTATCATTTTCCAATCACAGTGTTAATGGTAAGGCTTGAggctgggcgtggcacccatgcctgtaatcccagtgctttc i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17015744 96 - 229590362 TCCTGGATCATGATAGCCTATCATTTTCCTGTCACAGCATTAATGGTAAGGCTTGAggctgggcgtggcacccatgcctgtaatcccagtgctttg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223779753 96 - 227556264 TCCTGGATCATGATAGCCTATCATTTTCCTGTCACAGCATTAATGGTAAGGCTTGAggctgggcgtggcacccatgcctgtaatcccagtgctttg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16829960 96 - 220367699 TCCTGGATCATGATAGCCTATCGTTTTCCTGTCACAGCATTAATGGTAAGGCTTGAGGCTGGGCGTGgcacccatgcctgtaatcctagtgctttg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82629486 96 + 85787240 TCCTGGATCATGATAGCCTATCATTTTCCTGTCACAGCATTAATGGTAAGGCTTGAggctgggcgtggcacccatgcctgtaatcccagtgctttg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 35239207 96 + 49578535 TCCTGGATCATGATAACCTATCATTTTCCAATCACGATGTTTATGGTAACGTTTTAgactgggcgtggtacccatatatgaaatcccagtgctttg i calJac3.chr19 C 0 C 0 e mm10.chr1 178862113 705 + 195471971 I e canFam3.chr7 36442970 70 + 80974532 I e nomLeu3.chr5 140303724 554 - 143122389 I a score=63088.000000 s hg38.chr1_KI270759v1_alt 295034 21 + 425601 ggaggcagaggtgggagttca s panTro4.chr1 225051763 21 + 228333871 ggaggcagaggtgggagttca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226420780 21 - 229942017 ggaggcagaggtgggagttca i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17015840 21 - 229590362 ggaggcagaggtgggagttca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223779849 21 - 227556264 ggaggcagaggtgggagTTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16830056 21 - 220367699 ggaggcagaggtgggagttca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82629582 21 + 85787240 ggaggcagaggtgggagTTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 35239303 21 + 49578535 ggaggcagaggtgggagttca i calJac3.chr19 C 0 C 0 s canFam3.chr7 36443040 21 + 80974532 ggaggaagaggagaaaaagCA i canFam3.chr7 I 70 C 0 e mm10.chr1 178862113 705 + 195471971 I e nomLeu3.chr5 140303724 554 - 143122389 I a score=20088.000000 s hg38.chr1_KI270759v1_alt 295055 6 + 425601 agacaa s panTro4.chr1 225051784 6 + 228333871 agacaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226420801 6 - 229942017 agacaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140304278 6 - 143122389 AGACAA i nomLeu3.chr5 I 554 C 0 s rheMac3.chr1 17015861 6 - 229590362 agacaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223779870 6 - 227556264 AGACAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16830077 6 - 220367699 agacaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82629603 6 + 85787240 AGACAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 35239324 6 + 49578535 agacag i calJac3.chr19 C 0 T 62666 s canFam3.chr7 36443061 5 + 80974532 -ATCAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178862113 705 + 195471971 I a score=747572.000000 s hg38.chr1_KI270759v1_alt 295061 243 + 425601 --gcctggGCCATGTTCagcactttacatgcccattcactgagtttgcacagccg-cccatatgacgggcattgttattcctactgtacaggtgaggaaatgggggctctgagaagtgtgactgtttgtgggaggcagcagctggcatgatggaaaaagtgtaggcattg----------gaggtgggatccaagtccagtctt-ccacccacaggttcagtgatgtggggcaagttatataacaca-gttttctcat s panTro4.chr1 225051790 243 + 228333871 --gcctggGCCATGTTCagcactttacatgcccattcactgagtttgcacagccg-cccatatgacgggcattgttattcctactgtacaggtgaggaaatgggggctctgagaagtgtgactGTTTGTgggaggcagcagctggcatgatggaaaaagtgtaggcattg----------gaggtgggatccaagtccagtctt-ccacccacaggttcagtgatgtggggcaagttgtataacaca-gttttctcat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226420807 243 - 229942017 --gcctgggccatgTTCagcactttacatgcccattcattgagtttgcacagccg-cccatatgacgggcattgttattcctactgtacaggtgaggaaatgggggctctgagaagtgtgactGTTTGTgggaggcagcagctggcatgatggaaaaagtgtaggcattg----------gaggtgggatccaagtccagcctt-ccacccacaggttcagtgatgtggggcaagttatataacatc-gttttctcct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140304284 239 - 143122389 --GCCTGGGccatgttcagcactttacatactcattcattgagtttgcacagccg-cccatatgacaggcattgttattcctactgtacaggtgaggaaatgggggctctgagaagtgtgac----tGTgggaggcagctgctggcatgatggaaaaagtgtaggcgttg----------gaggtgggatccaagtccagcctt-ccacccacaggttcagtgatgtggggcaagttgtatgacaca-gttttctcat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17015867 238 - 229590362 --gcctggGCCATGTTCagcactttacatgcccattcattgaatttgcacagccg-cccatatggcgggcatcattattcctactgtacaggtgaggaaacgg-ggctctgtgaagtgtgactGTTTGTgggaggcagcagccggcatgatggaaaaagcgtaggcgttg----------gaggtgggatccaagtccag-----cctcccacaggttcagtgatgtggggcaagttacataacatc-attttctcat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223779876 238 - 227556264 --GCCTGGGccatgttcagcactttacatgcccattcattgaatttgcacagccg-cccatatggcgggcatcattattcctactgtacaggtgaggaaacgg-ggctctgtgaagtgtgactGTTTGTgggaggcagcagccggcatgatggaaaaagcgtaggcgttg----------gaggtgggatccaagtccag-----cctcccacaggttcagtgatgtggggcaagttacataacatc-attttctcat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16830083 238 - 220367699 --gcctgggccaTGTTCAGCACTTTACATGCCCATTCATTGAATTTGCACAGCCG-CCCGTATGTCAGGCATTGTTGTTCCTACTGTACAGGTGAGGAAACGg-ggctctgtgaagtgtgactgtTTGTGGGAGGCAGCAGCCGGCATGATGGAAAAAGCGTAGGCGTTG----------GAGGTGGGATCCAAGTCCAG-----CCTCCCACAGGTTCAGTGATGTGGGGCAAGTTACATAACATC-ATTTTCTCAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82629609 243 + 85787240 --GCCTGGGccatgttcagcactttagatgcccgttcattgaatttgcacagccg-cccgtatgtcaggcattgttactccttctgtacaggtgaggaaacggaggctctgtgaagtgtgactGTTTGTgggaggcagcagccggcatgatggaaaaagcgtaggcgttg----------gaggtgggatccaagtccagcctt-cctcccacaggttcagtgatgtggggcaagttacataacatc-attttctcat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14339385 237 - 49578535 --gcttatgccacattcagcactttacatgctggtccattgaatttttacacccg-ccaatatgatgggcattgtta----ggctatacagataaggaagctggggctctaagaagtgtgactATCTGTgggaggcagcagttggcatgatggaaaaagagcaggctttg----------gaggtgggatccaagtccagcctt-cctcccacaggttcagtgacacggggt--tttatataacatc-attttttcat i calJac3.chr19 I 113 C 0 s canFam3.chr7 36443066 254 + 80974532 GCACCCACCCCAGgttcagtacttcacat--tgattcatttcattctccccacagtcccatgagatagatttcattgtccccattgtacaggtgaaaacactgaggcttggagtggctGGACCACGTGTGgga-gcagcacttgccatgatggaaaaagtataggctttggcatcacacagaggtgggatcagagcctggtctcaccacctcccttttcagggac-tggggcaagttctagaacacctcttctctcat i canFam3.chr7 C 0 C 0 e mm10.chr1 178862113 705 + 195471971 I a score=205260.000000 s hg38.chr1_KI270759v1_alt 295304 62 + 425601 ctgtaaaatctggacaggcatacctacaccctggagcattgggaggattaaatgagatcgtg s panTro4.chr1 225052033 62 + 228333871 ctgtaaaatctggacaggcacacctacaccctggagcattgggaggattaaatgagatcgtg i panTro4.chr1 C 0 I 120 s ponAbe2.chr1 226421050 62 - 229942017 ctgtaaaatctggacaggcatacctacaccctggagcactgggaggattaaatcagatcgtg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140304523 60 - 143122389 ctgtaaaatctggacaggc--acctacaccctggagctttgggaggattaaatgagatcgtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17016105 62 - 229590362 gagtaaaatcccgacaggcatacctacacgctggagcacggggaggattcagtgagatcgtg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223780114 62 - 227556264 gagtaaaatcccgacaggcatacctacacgctggagcacggggaggattcagtgagatcgtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16830321 62 - 220367699 GAGTAAAATCCGGACAGGCATACCTACACGCTGGAGCACGGGGAGGATTCAGTGAGATCGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82629852 62 + 85787240 gagtaaaatccggacaggcatacctacacgctggagcacggggaggattcagtgagattgtg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14339622 62 - 49578535 ctgtaagatctggaaaggtatacctccaccctagagcattgggaggattcaatgagatcacg i calJac3.chr19 C 0 C 0 s mm10.chr1 178862818 62 + 195471971 ctgtaaaatcttgacaagagtgtccatgccctgggtcatcaggggaatgaaataagatcaca i mm10.chr1 I 705 C 0 s canFam3.chr7 36443320 62 + 80974532 gtgtgaaatctggacaggtatgcctatgcgctggctggttgggaggatgacataatgccctg i canFam3.chr7 C 0 C 0 a score=1054400.000000 s hg38.chr1_KI270759v1_alt 295366 365 + 425601 tagataacagcatagtcctggcataTGAGAG---------------A--------AAATGGCAGGGATCTTTCTATGACCT--CAGTGTGAGAAGCAAGATCTAAACCCTCAGAGGTAGAGTGCGTCCCACACTCGGGCTCCTTCTACTGGGACA-CTG-GCTTCCGGATCT-CCACGGAGAACTGTTCTTAAGTTAGAAG-GCAAGCACAGCGGGGACACGGTGCAGGACACCTGCGGA-CCCAGTGCCCTTGGGATTCTTTAC-CTTCAGCTTTGCTCACTGCAGATTAGTCCTCATCGCTCAGCAGAGAGAGTCGAGATTGGCAGGAGGAT-------CT----CCGTCTTGAACAACAT-TATGATTCTCTGAGCATTTCTATATGTTGAAAATATTTTATTTA s panTro4.chr1 225052215 365 + 228333871 TAGATAACAGCATAGTCCTGGCATATGAGAG---------------A--------AAATGGCAGGGATCTTTCTATGACCT--CAGTGTGAGAAGCAAGATCTAAACCCTCAGAGGTGGAGCGCGTCCCACACTCGGGCTCCTTCTACTGGGACA-CTG-GCTTCCGGATCT-CCACGGAGAACTGTTCTTAAGTTAGAAG-GCAAGCACAGCGGGGACACGGTGCAGGACACCTGCGGA-CCCAGTGCCCTTGGAATTCTTTAC-CTTCAGCTTTGCTCACGGCAGATTAGTCCTCATGGCTCAGCAGAGAGAGTCGAGATTGGCAGGAGGAT-------CT----CCGTCTTGCACAACAT-TATGATTCTCTGAGCATTTCTATATGTTGaaaatattttattta i panTro4.chr1 I 120 C 0 s ponAbe2.chr1 226421112 366 - 229942017 taaataacagcacagtcctggcaTTTGAGAG---------------A--------AAATGGCAGGGATCATTGTATGACCT--CAGTGGGAGAAGCAAGATCTAAACCCTGAGAGGTGGAGCGCGTCCCACCCTCGGGCTCCTTCCATCGGGACA-CCG-GCTTCCGGGTCT-CCAAGGAGTACTGTTCTTAAGTTAGAAG-GCAAGCACGGCGGGGACACGGTGCAGGACACCTGGGGA-CCCAGTGCCCTTGGAATTCTTTAC-CTTCAGCTTTGCACACTGCAGATTAGTCCTCATGGCTCAGCAGAGAGAGCCGAGATCGGCAGGAGGAT-------CT----CCGTCTTGCACAACATATATGATTCTCTGAGCATTTCTATACGTTGAAAATATTTTATTTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140304583 366 - 143122389 tagataacagcacagtcctggcataTGAGAG---------------A--------AAATGGCAGGGATCATTCTATGACCT--CAGTGGGAGAAGCAAGACCTAAACCCTGAGAGGTGGAGCACCTCCCACCCTTGGGCTCCTTCCACTGGGACA-CCG-GCTTCCAGCTCT-CCACGGAGTACTGTTCTTAAGTTAGAAG-GCAAGCACCGTGGGGACACGGTGCAGGACACCTGGGGA-CCCAGTGCCCTTGGAATTCTTTAC-CTTCAGCTTTGCACACTGCAGATTAGTCCTCACGGCTCAGCAGACAGAGTCAAGATCGGCAGGAGGAT-------CT----CTGTCTTGCACAACATATATGATTCTCTGAGCATTTCTATATGATGAAAATATTTTATTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17016167 340 - 229590362 taGATGACA---------------------------------------------------GCAGGGATCATTCTATGACCTCACAGTGGAAGAAGCAAGATCTAAGCCCTGAGAGGTGGTGCGCATCCCACCCTCGGGCTCCTTCCACCAGGACA-CCG-GCTTCTGGATCT-CCGCGGAGTTCTGTTCTTAAGTTAGAAG-GCAAGCAGAGCGGGGACACAGTGCAGGACACCTGGGGA-CCCAGCGCCCTGGGAATTCTTTAC-CTTCAGCTTTGCATGCTGCACATGAGTCCTCATGGCTCAGCAGAGAGAGCCGAGGTCGGCAGGAGGAT-------CT----CTGTCTCGCACAACATATATGATTCTCTGAGCATTTCTATATGTTGaaaatattttattta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223780176 340 - 227556264 taGATGACA---------------------------------------------------GCAGGGATCATTCTATGACCTCACAGTGGAAGAAGCAAGATCTAAGCCCTGAGAGGTGGTGCGCATCCCACCCTCGGGCTCCTTCCACCAGGACA-CCG-GCTTCTGGATCT-CCGCGGAGTTCTGTTCTTAAGTTAGAAG-GCAAGCAGAGCGGGGACACAGTGCAGGACACCTGGGGA-CCCAGCGCCCTGGGAATTCTTTAC-CTTCAGCTTTGCATGCTGCACATGAGTCCTCATGGCTCAGCAGAGAGAGCCGAGGTCGGCAGGAGGAT-------CT----CTGTCTCGCACAACATATATGATTCTCTGAGCATTTCTATATGTTGAAAATATTTTATTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16830383 355 - 220367699 TAGATGACAGCACAGGCCTGGCGTACGAGAG---------------A--------AAATGGCAGGGATCATTCTATGACCTCACAGTGGAAGAAGCAAGATCTAAGCCCTGAGAGGTGGCGCGCATCCCACCCTCGGGCTCCTTCCACCAGGACA-CCG-GCTTCTGGATCT-CCACGGAGTTCTGTTCTTAAGTT--------------AGTGGGGACACAGTGCAGGACACCTGGGGA-CCCAGTGCCCTTGGAATTCTTTAC-CTTCAGCTCTGCACGCTGCACATGAGTCCTCATGGCTCAGCAGAGAGAGCCGAGGTCGGCAGGAGGAT-------CT----CTGTCTTGCACAACATATATGATTCTCTGAGCATTTctatatgttgaaaatattttattta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82629914 355 + 85787240 tagatgacagcacaggcctggcgtacGAGAG---------------A--------AAATGGCAGGGATCATTCTATGACCTCACAGTGGAAGAAGCAAGATCTAAACCCTGAGAGGTGGCACACATCCCACCCTCGGGCTCCTTCCACCAGGACA-CCG-GCTTCTGGATCT-GCACGGAGTTCTGTTCTTAAGTT--------------AGCGGGGACACAGTGCAGGACGCCTGGGGA-TGCAGTGCCCTTGGAATTCTTTAC-CTTCAGCTCTGCATGCTGCACGTGAGTCCTCATGGCTCAGCAGAGAGAGCCGAGGTCGGCAGGAGGAT-------CT----GTGTCTTGCACAACATATATGATTCTCTGAGCATTTCTCTATGTTGAAAATATTTGATTTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14339684 362 - 49578535 tagataacagcacagttctggtgtacaAGAC---------------A--------ACACGGCAGGTATTGTTCTATGACGTCGCGATGGGAGAAGCAAGATCTAAATCCTGAGAGGTGGAGCACATCCCACGCTCGGGCTTCTTCCACCATGACA-CCA-GCTTCTGGGTCT-ACACAGAGTTACTGCCTTCAGTTACAAG-GCAGGCACAGCTGGGACACAGTGCAGGACACCTGGGGA-CCCAGTGCCCTTGGAATTCTTTCC-CTTCAGCTTTGTGCACTGTAGGTGAGT-----TGGCTCAGCAGGTAGAGCTGAGGTCAGCAGGAGGAT-------CG----CCAGCTTGCACAAAATATATGATTCTCTGAGCATTTCTATAAGTTG-GAATATTCTATTTA i calJac3.chr19 C 0 C 0 s mm10.chr1 178862880 367 + 195471971 cagatgatggcacaggcctggcataacatagccagcccctcacctcc--------aaatggcaggaactcttctatGGTCTCGCA-TAGGAGAATCACATTTTGAAACCTGAAAGGCCAACCACACCCTA--------------CCACCATAACAGCTG-GCCCCCAATCCA-CACCGGAGTATGGATTATAAGGAGATAA-ATAGGCA------GGGTATGGTATTAGACATCTGATGAGCCTGGTACCCTTGGAGTTTTTCATGATTAAGCTTTGTACAATGAAGTTTAGTCCCCAAGCCTCGGCAAACAGGG--GTGGACAGGAGGATGAC-------CTTAACCCACTGTACATGATACGTATTGTTCTGTGAACATTTCTATGTGTTTGAAATGTTTTGTTAA i mm10.chr1 C 0 I 427 s canFam3.chr7 36443382 362 + 80974532 tagctgacagcacaaccctagcacatagtag---------------acctccaggaaatgcaggtcattgttacatgacctactgatgggagagccaggatttaaattcccagaggctgacttcactccagccatgggctccttccaccatgaca-cggtgccccCAGCTCTACCCCCGAGTGCTGTGGTGAGGTGGCAAGAGCCAGCACGGCCAGGGCATGGCACAGGGCAAGTGATGAGGCCAGTGCC----------------CTTCAGGTTTGCACACTGCGAGTCAGACCCC-TGCCTCCGCAGACAGAG----GACAAACAGGAGAGGGCCCTTACT----CCATTCTGCACAGTCCAGATTCTTCTCTGAGCATTTATGCACTTTCAAAATATTTC----- i canFam3.chr7 C 0 C 0 a score=15282.000000 s hg38.chr1_KI270759v1_alt 295731 4 + 425601 AAAA s panTro4.chr1 225052580 4 + 228333871 aaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226421478 4 - 229942017 AAAG i ponAbe2.chr1 C 0 I 1 s nomLeu3.chr5 140304949 4 - 143122389 AAAA i nomLeu3.chr5 C 0 I 1 s rheMac3.chr1 17016507 4 - 229590362 aaaa i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223780516 4 - 227556264 AAAA i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16830738 4 - 220367699 aaaa i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82630269 4 + 85787240 AAAA i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14340046 4 - 49578535 AAAA i calJac3.chr19 C 0 I 282 s mm10.chr1 178863674 4 + 195471971 AAAA i mm10.chr1 I 427 C 0 e canFam3.chr7 36443744 0 + 80974532 C a score=6093500.000000 s hg38.chr1_KI270759v1_alt 295735 1629 + 425601 TTACAACCACCCCTCCTCCTCAAAATTGCATGACAGAGATTTCACCAAACCTGACAACTGATGAGACAAAGAGAACAAGACACAGAGAGGAATTTAGAAATAATCCTTGTGCATACCTTCCGAAGTTGCCACA---TATTACTAAAATTACCTGTATCTG----TGTCTA----TCCTG-CTACTctatgcattacatatctttgcatcccc----catgcctagcacagtgcccagca------------------------catagtaggtgctcaaaaaaagtgcccatcatttgttggactgaaCTCACAACACAGTAACAAA----------GAGCCAGTTA--GAGCAAAT----------------------------------------GCTG-TCCCTTTTCCCAGGACTG------------------TAGCTTCCAGACCCGTGT----------------------------------GAGGCCTCAGCCTGATTTCTGTTCACCTTAGAACCCCAAGGCTGACTGTGCATTTCCATAAGCACCTCGCTCGCCTGCAGGA-CGGGGCTGGGTTGGTGGTGGGTACCAGAGGTGCTCAGTGTTCAATCACGCAGAAAGTGGGCTAAAGGGCAGCGC--CTCCTGCTCCCT----------------------------CCAGAGATGCACTTCCATTCTCTGAAACGACAACTTCTCTGCACTCGCTTAATGGGATCCCAAATAACACG-TCGCAGACCAGTCTTTTATCACTGTTGCCCCTTGGAACACATTTCGAATGCTGGCCATTAAAAGCAGGCCATTTCACGGTTCTTTAATGATGACACTAATAACTGT-GGATTTTTGTCTCCCAGAGTCCTGATGAGCTGAGCCAAGGAGTAAATTACGGAGCTAACTTTTATGTGCATGGTTTATTGATCTGTGAG-------CTTCAAGGAAACTGCACCAGCCCCTATAGTTTGGCAGTCCAGACTACCTTTTCATCTGTGTAATTGGGCCACGAGGGCGCAGTTAATATTCAATTTATATTAATAGGAAGACAAAGAACATGATGTGCCAGCTCCATATTGAAGTAATGGGCATATCAAAATATTCTACCTGGTAATTATAAATAAATCAGTTTTCCCGTGACCCACCAAGGATGATGTTGCTAATTCACTGTGCATTTCATCATAATTTATCCTGAGAAAGTTCA--GTGCTGCCATGTGCATGTATA-TCG-CAGAGTATACAAGGGTGCT-CCATCGTAAAACACCCAGCTGTCTTCATCCATGCTGTCGCCCATCT---TTTCTTAACAGGTGAAAGTCATGCTTCGCATCTGTTCCACCTTGGCTCGAGATACTTCAGAATCCAGCTCTTTCTTAAAGGTGGACCCACGGAAGAAGCAGATCACCTTGTACGATCCCCTGACTTGTGGAGGTCAAAATGCCTTCCAAAAGAGAGGCAACCAGGTTCCTCCAAAGATGTTTGCCTTCGATGCAGTTTTTCCACAAGACGCTTCTCAGGTGGGTATCAGCCCCCTCTCAGGCTCAGGCAACGTTGA-----TGAAAGGGCAACGTTTACTCATTCACAAGGGCCCTTGAGCTGGGAGGGTGTCTTCTGGAGCATTCTGATGGACCAGTTCCTTCA------------------GGAGTCAATCTGAGCTCCACCGAATGGTCCAGTGCTTTTGAATTACTGGTGTCAGA----CCTTGGGCAGGATCAGTGTGCACAGATTTCAATAAAATCTGTCCTTGGGGAGAAGGAAGTGTGAGCCAGTCAGTG--GATCAC---ACACAGAAGCAGGAAGAT s panTro4.chr1 225052584 1629 + 228333871 ttaCAACCACCCCTCCTCCTCAAAATTGCATGACAGAGATTTCACCAAACCTGACAACTGATGAGACAAAGAGAACAAGACACAGAGAGGAATTTAGAAATAATCCTTGTGCATACCTTCCGAAGTTGCCACA---TATTACTAAAATTACCTGTATCTG----TGTCTA----TCCTG-CTACTctatgcattacatatctttgcatcccc----catgcctagcacagtgcccggca------------------------catagtaggtgctcaaaaaaagtgcccatcatttgttggactgaaCTCACAACACAGTAACAAA----------GAGTCAGTTA--GAGCAAAT----------------------------------------GCTG-TCCCTTTTCCCAGGACTG------------------TAGCTTCCAGACCCGTGT----------------------------------GAGGCCTCAGCCTGATTTCTGTTCACCTTAGGACCCCAAGGCTGATTGTGCATTTCCATAAGCACCTCGCTCGCCTGCAGGA-CGGGGCTGGGTTGGTGGTGGGTACCAGAGGTGCTCAGTGTTCAATCACGTGGAAAGTGGGCTAAAGGGCAGCGC--CTCCTGCTCCCT----------------------------CCAGAGATGCACTTCCATTCTCTGAAACGACAACTTCTCTGCACTCACTTAATGGGATCCTAAATAACACG-TCGCAGACCAGTCTTTTATCACTGTTGCCCCTTGGAACACATTTCGAATGCTGGCCATTAAAAGCAGGCCATTTCACGGTTCTTTAATGATGACACTAATAACTGT-GGATTTTTGTCTCCCAGAGTCCTGATGAGCTGAGCCAAGGAGTAAATTACGGAGCTAACTTTTATGTGCATGGTTTATTGATCTGTGAG-------CTTCAAGGAAACTGCACCAGCCCCTATAGTTTGGCAGTCCAGACTACCTTTTCATCTGTGTAATTGGGCCACGAGGGCGCAGTTAATATTCAATTTATATTAATAGGAAGACAAAGAACATGATGTGCCAGCTCCATATTGAAGTAATGGGCATATCAAAATATTCTACCTGGTAATTATAAATAAATCAGTTTTCCCGTGACCCAGCAAGGATGATGTTGCTAATTCACTGTGCATTTCATCATAATTTATCCTGAGAAAGTTCA--GTGCTGCCATGTGCATGTATA-TCG-CAGAGTATACAAGGGTGCT-CCATCGTAAAACACCCAGCTGTCTTCATCCATGCTGTCACCCATCT---TTTCTTAACAGGTGAAAGTCATGCTTCGCATCTGTTCCACCTTGGCTCGAGATACTTCAGAATCCAGCTCTTTCTTAAAGGTGGACCCACGGAAGAAGCAGATCACCTTGTACGATCCCCTGACTTGTGGAGGTCAAAATGCCTTCCAAAAGAGAGGCAACCAGGTTCCTCCAAAGATGTTTGCCTTCGATGCAGTTTTTCCACAAGACGCTTCTCAGGTGGGTATCGGCCCCCTCTCAGGCTCAGGCAACGTTGA-----TGAAAGGGCAACGTTTACTCATTCACAAGGGCCCTTGAGCTGGGAGGGTGTCTTCTGGAGCATTCTGATGGACCAGTTCCTTCA------------------GGAGTCAATCTGAGCTCCATCGAATGGTCCAGTGCTTTTGAATTACTGGTGTCAGA----CCTTGGGCAGGATCAGTGTGCACGGATTTCAATAAAATCTATCCTTGGGGAGAAGGAAGTGTGAGCCAGTCAGTG--GATCAC---ACACAGAAGCAGGAAGAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226421483 1633 - 229942017 TTACAACCACCCCTCCTCCCCAAAATTGCATGACAGAGATTTCAGCAAACCTGACAACTGATGAGACAAAGAGAACAAGACACAGAGAGGAATTTAGAAATAATCCTCGTGCATACCTTCCGAAGTTGCTGTA---TATTACTAAAATTACCTGTATGTG----TGTCTA----TCCTG-CTACTctatgcattacatatctttgcatcccc----catgcctagcacagtgcctggca------------------------catagtaggtgctcaaaaaaagggtccatcatttgttggactgaaCTCACAACACAGTAACAAA----------GAGCCAGTTA--GAGCAAAT----------------------------------------GCTG-TCCCTTTTCCCAGGACTG------------------TAGCTTCCAGACCCGTGT----------------------------------GAGGCCTCAGCCTGATTTCTGTTCACCTTAGGACCCCAAGGCTGACTGTGCATTTCCATAAGCACCTCACTCGCCTGCAGGAGCGGGGCTGGGTTGGTGGTGGGCACCAGAGGTACTCAGCGTTCAATCACGCGGCAAGTGGGCTAAAGGGCAGCGC--CTCCTGCTCCCT----------------------------CCAGAGATGCACTTCCATTCTCTGAAACGACAACTTCTCTGCACTCACTTAACGGGATCCCAAATAACACGTTTGCAGACCAGTCTTTTATCACTGTTGCCCCTTGGAACACATTTCGAATGCTGGCCATTAAAAGCAGGCCATTTCATGGTTCTTTAATGATGACACTAATAACTGT-GGATTTTTGTCTCCCAGAGTCCTGATCAGCTGAGCCAAGGAGTAAATTACGGAGCTAACTTTTATGTGCATGGTTTATTGATCTGTGAG-------CTTCAAGGAAACTGCACCAGCCCCTATAGTTTGGCAGTCCAGACTACCTTTTCATCTGTGTAATTGGGCCACGAGGGCGCAGTTAATATTCAATTTATATTAACAGGAAGACAAAGAACATGATGTGCCAGCTCCATATTGAAGTAATGGGCATATGAAAATATTCTACCTGGTAATTATAAATAAATCAGTTTTCCCATGACCCAGCAAGGATGATGTTGCTAATTCACTCTGCATTTCATCATAATTTATCCTGAGAAAGTTCAGTGTGCTGCCATGTGCATTTATA-TCG-CAGAGTATACAAGGGTGCT-CCATCGTAAAACACCCAGCTGTCTTCATCCATGCTGTTGCCCATCT---TTTGTTAACAGGTGAAAGTCATGCTTCGCATCTGTTCCACCTTGGCTCGAGATACCTCAGAATCCAGCTCTTTCTTAAAGGTGGACCCACGGAAGAAGCAGATCACCTTGTATGATCCCCTGACTTGCGGAGGTCAAAATGCCTTCCAAAAGAGAGGCAACCAGGTTCCTCCAAAGATGTTTGCCTTCGATGCAGTTTTTCCACAAGATGCTTCTCAGGTGGGTATCAGCCCCCTCTCAGGCTCAGGCAATGTTGA-----TGAAAGA--AGCGTTTACTCATTCACAAGGGCCCTTGAGCTGGGAGGGTGTCTTCTGGAGCATTCTGATGGACCAGTTCCTTCA------------------GGAGTCAATCTGAGCTCCATCGAATGGTCCAGTGCTTTTGAATTACTGGTGTCAGA----TCTTGGGCAGGATCAGTGTGCAGGGATTTCAATAAAATCTGTCCTTGGGGAGAAGGAAGTGTGAGCCAGTCAGTGGAGATCAC---ACACAGAAGCAGGAAGAT i ponAbe2.chr1 I 1 C 0 s nomLeu3.chr5 140304954 1646 - 143122389 TTACAACCATCCCTCCTCCCCAAAATTGCATGACAGACATTTCATCAAACCTGACAACTGATGAGACAAAGAGAACAAGACACAGAGAGGAATTTAGAAATAATCCTTGTGCATACCTTCCGAATTTGCCATA---TGTTACCGAAATTACCTGTATTTGTGTCTGTCTA----TCCTG-CTACTCGATGCATTACATATCTTTGCATCCCC----CATGCCTAGCGCAGTGCCCGGC-------------------------CATTGT-----------AAAAGTGCCCATCATTTGTTGGACTGAACTCACAACACAGTAACAAA----------GAGCCAGTTA--GAGCAAAT----------------------------------------GCTG-TCCCTTTGCCCAGGACTG------------------TAGCCTCCAGACCCGTGT----------------------------------GAGGCCTCAGCCTGATTTCTGTTCACCTTAGGACCCCAAGGCTGACTGTGCATTTCCATAAGCACCTCACTCGCCTGCAGGAGCGGGGCTGGGTTGGTGGTGGGCACCAGAGGTGCTCAGCGTTCAATCACGCAGAAAGTGGGCTAAAGCGCAGCGC--CGCCTGCTCCCTCCAGAGATGCGCTTCCATCCTCCGAAACCCAGAGATGCACTTCCATCCTCTGAAACGACAACTGCTCTGCACTCACTTAATGGGATCCCAAATAACACG-CTGCAGACCAGTCTTTTATCGCTGTTGCCCCTTGGAACACATTTCGAATGCTGGC--TTAAAAGCAGGTCATTTCACGGTTCTTTAATGATGACACTAATAACTGT-GGATTTTTGTCTCCCAGAGTCCTGATGAGCTGAGCCAAGGAGTAAATTACGGAGCTAACTTTTATGTGCGTGGTTTATTGATCTGTGAG-------CTTCAAGGAAACTGCACCAGCCCCTATAGGTTGGCAGTCCAGACTACCTCTTCATCTGTGTAATTGGGCCACAAGGGCACAGTTAATATTCAATTTATATTAATAGGAAGACAAAGAACATGATGTGCCAGCTGCATATTGAAGTCGTGGGCATATCAAAATATTCTGCCTGGTAATTATAAATAAATCAGTTTTCTCATGACCCAGCAAGGATGATGTTGCCAATTCACTGTGCATTTCATCATAATTTATCCTGAGAAAGTTCA--GTGCTGCCATGTGCATTTATA-TCG-CAGAGCATACAAGGGTGCT-CCATCGTAAATCACCCAGCTGTCTTCATCCATGCTGTTGCCCCTCT---TTTCTTAACAGGTGAAAGTCATGCTTCGCATCTGTTCCACCTTGGCCCGAGATACCTCAGAATCCAGCTCTTTCTTAAAGGTGGACCCACGGAAGAAGCAGATCACCTTGTACGATCCCCTGACTTGCGGAGGTCAACATGCCTTCCAAAAGAGAGGCAACCAGGTTCCTCCAAAGATGTTTGCCTTCGATGCAGTTTTTCCACAAGACGCTTCTCAGGTGGGTATCAGCCCCCTCTCAGGCTCAGGCAATGTTGA-----TTAAAGA--AGCGTTTACTCATTCACAAGGGCCCTTGAGCTGGGAGGGTGTCTTCTGGAGCATTCTGATGGACCAGTTCCTTCA------------------GGAGTCAATCTGAGCTCCATCAAATGGTCTAGTGCTCTTGAATTACTGGTGTCAGA----CCTTGGGCAGGATCAGTATGCAGCGATTTCAATAAAATCTGTCCTTGGGGAGAAGGAAGTGTGAGCCAGTCAGTG--GGTCAC---ACACAGAAGCAGGAGGAT i nomLeu3.chr5 I 1 C 0 s rheMac3.chr1 17016512 1619 - 229590362 ataCAACCACCCCTCCTCCCCAAAATTGCGTGACAGAGATTTCATCAGACCTGACAGCTAATGAGACAAGGAGGACAAGGCACAGAGAGGAACAGAGAAATAATCCTTGTGCATACCTTCCGAATTT-CCATA---TATTACTAAAATTACCCATATCTG----TGTCTG----TCCTG-CCGCTctgtgcattacatatctttgcatcccc----catgcctagcacagtgcccggca------------------------catagtaggtgctc----aaagtgcccatcatttgttggaCTGAGCTCACAACACAGAAATAGA----------GAGCCAGTTA--GAGCAAAT----------------------------------------GCTG-TCCCTTTTCCCAGGACTG------------------TAGCTTCCAGACCCGTGT----------------------------------GAGGCCTCAGCCTGATTTCTGTTCACCTGAGGACCCCAAGGCAAAC--TGCATTTCCATCAGCACCTCACTTGCCTGCAGGAGCGGGATGGGGTTGGTGGCGGGCACCAGAGGTGCTCAGTGTTCAGTCACTCAGAAAGTGGGTTAAAGGGCAGCGC--CTCCTGCTCCCT----------------------------CCAGCGATGCACTTCCATTCTCTGAAATGACAACTTCTCTGCACTCACTTAATGGGATCCCAAATAACACG-TTGCAGACCAGTCTTTTATCACTGTTGCCCCTTGGAACACATTTCGAATGCTGGCCATTAAAAGCAGGCCATTTCACGGTTCTTTAATGATGACACTAATAACTGT-GGATTTTTGTCTCCCAGAGTCGTGATGAGCTGAGCCAAGGAGCAAATTACAGAGCTAACTTCTATGTGCATGGTTTACTGATCTGTGAG-------CTTCAAGGAAACTGCACCAGCCCCTATAGTTTGGCAGTCCAGACTACCTTTTCATCTGCGTAATTGGGCCACAAGGGCACAGTTAATATTCAATTTATATTAATAGGAAGACAAAGAACATGATGTCCCAGCTCCATATTGAAGTAATGGGCATTTCAAAATATTCTACCTGGTAATTATAAATAAATCAGTTTTCCCATGACCCAGCCAGGATGATGTCGCTAATTCACTGTGCATTTCCTCATAATTTATCCTGAGAAAGTTCA--GTGCTGCCATGTGCACTTATA-TCG-CAGAGTGTACAAGGGTGCT-CCTTCGTAAGACACCCAGCTGTCTTCATCTGTGCTGTTGCCCATCT---TTTCTTAACAGGTGAAAGTCATGCTTCGCATCTGTTCCACCTTGGCTCGAGATACCTCAGAATCCAGCTCTTTCTTAAAGGTGGACCCACGGAAGAAGCAGATCACCTTGTACGATCCCCTGACTTGTGGAGGTCAAAATGCCTTCCAAAAGAGAGGCAACCAGGTTCCCCCAAAGATGTTTGCCTTCGATGCAGTTTTTCCCCAAGACGCCTCCCAGGTGGGTATCAG-CCCCTCTCAGGCTCA-GCAATGTTGA-----TTAAAGA--AGCGTTTACTCATTCACAAGGGCCCTTGAGCTGGGAGGGTGTCTTCTGGAGCGTTCGGATGGACCAGTTCCTTCA------------------GGAGTCAATCTGAGCTCCATTGAATGGTCCAGTGCTTTTGAATTACTGGTGTCAGA----CTTTGGGCAGGATCAGTGTGCAGGAATTTCAATAAAACATGTCCTTGAGGAGCAGGAAGTGCGAGCCAGTCAGTG--GATCAC---ACACAGAAGCAGGAAGAT i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223780521 1619 - 227556264 GTACAACCACCCCTCCTCCCCAAAATTGCGTGACAGAGATTTCATCAGACCTGACAGCTAATGAGACAAGGAGGACAAGGCACAGAGAGGAACAGAGAAATAATCCTTGTGCATACCTTCCGAATTT-CCATA---TATTACTAAAATTACCCATATCTG----TGTCTG----TCCTG-CCGCTctgtgcattacatatctttgcatcccc----catgcctagcacagtgcccggca------------------------catagtaggtgctc----aaAGTGCCCATCATTTGTTGGACTGAGCTCACAACACAGAAATAGA----------GAGCCAGTTA--GAGCAAAT----------------------------------------GCTG-TCCCTTTTCCCAGGACTG------------------TAGCTTCCAGACCCGTGT----------------------------------GAGGCCTCAGCCTGATTTCTGTTCACCTGAGGACCCCAAGGCAAAC--TGCATTTCCATCAGCACCTCACTTGCCTGCAGGAGCGGGATGGGGTTGGTGGCGGGCACCAGAGGTGCTCAGTGTTCAGTCACTCAGAAAGTGGGTTAAAGGGCAGCGC--CTCCTGCTCCCT----------------------------CCAGCGATGCACTTCCATTCTCTGAAATGACAACTTCTCTGCACTCACTTAATGGGATCCCAAATAACACG-TTGCAGACCAGTCTTTTATCACTGTTGCCCCTTGGAACACATTTCGAATGCTGGCCATTAAAAGCAGGCCATTTCACGGTTCTTTAATGATGACACTAATAACTGT-GGATTTTTGTCTCCCAGAGTCGTGATGAGCTGAGCCAAGGAGCAAATTACAGAGCTAACTTCTATGTGCATGGTTTACTGATCTGTGAG-------CTTCAAGGAAACTGCACCAGCCCCTATAGTTTGGCAGTCCAGACTACCTTTTCATCTGCGTAATTGGGCCACAAGGGCACAGTTAATATTCAATTTATATTAATAGGAAGACAAAGAACATGATGTCCCAGCTCCATATTGAAGTAATGGGCATTTCAAAATATTCTACCTGGTAATTATAAATAAATCAGTTTTCCCATGACCCAGCCAGGATGATGTCGCTAATTCACTGTGCATTTCCTCATAATTTATCCTGAGAAAGTTCA--GTGCTGCCATGTGCACTTATA-TCG-CAGAGTGTACAAGGGTGCT-CCTTCGTAAGACACCCAGCTGTCTTCATCTGTGCTGTTGCCCATCT---TTTCTTAACAGGTGAAAGTCATGCTTCGCATCTGTTCCACCTTGGCTCGAGATACCTCAGAATCCAGCTCTTTCTTAAAGGTGGACCCACGGAAGAAGCAGATCACCTTGTACGATCCCCTGACTTGTGGAGGTCAAAATGCCTTCCAAAAGAGAGGCAACCAGGTTCCTCCAAAGATGTTTGCCTTCGATGCAGTTTTTCCCCAAGACGCCTCCCAGGTGGGTATCAG-CCCCTCTCAGGCTCA-GCAATGTTGA-----TTAAAGA--AGCGTTTACTCATTCACAAGGGCCCTTGAGCTGGGAGGGTGTCTTCTGGAGCGTTCGGATGGACCAGTTCCTTCA------------------GGAGTCAATCTGAGCTCCATTGAATGGTCCAGTGCTTTTGAATTACTGGTGTCAGA----CTTTGGGCAGGATCAGTGTGCAGGAATTTCAATAAAACATGTCCTTGAGGAGCAGGAAGTGCGAGCCAGTCAGTG--GATCAC---ACACAGAAGCAGGAAGAT i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16830743 1612 - 220367699 gtacaaccACCCCTCCTCCCCAAAATTGCGTGACAGAGATTTCATCAGACCTGACAGCTAATGAGACAAGGAGGACAAGGCACAGAGAGGAACAGAGAAATAATCCTTGTGCATACCTTCCGAATTT-CCATA---TATTACTAAAATTACCCATATCTG----TGTCTG----TCCTG-CCGCTCTGTGCATTACATATCTTTGCATCCCc----catgcctagcacagtgcccggca------------------------catagtaggtgctc----aaagtGCCCATCATTTGTTGGACTGAGCTCACAACACAGAAATAGA----------GAGCCAGTTA--GAGCAAAT----------------------------------------GCTG-TCCCTTTTCCCAGGACTG------------------TAGCTTCCAGACCCGTGT----------------------------------GAGGCCTCAGCCTGATTTCTGTTCACCTGAGGACCCCAAGGCAAAC--TGCATTTCCATCAGCACCTCACTTGCCTGCAGGAGCGGGAC-GGGTTGGTGGCGGGCACCAGAGGTGCTCAGTGTTCAGTCACTCAGAAAGTGGGTTAAAGGGCAGTAC--CTCCTGCTCCCT----------------------------CCA-----GCACTTCCATTCTCTGAAACGACAACTTCTCTG-ACTCACTTAATGGGATCCCAAATAACACG-TTGCAGACCAGTCTTTTATCACTGTTGCCCCTTGGAACACATTTCGAATGCTGGCCATTAAAAGCAGGCCATTTCACGGTTCTTTAATGATGACACTAATAACTGT-GGATTTTTGTCTCCCAGAGTCATGATGAGCTGAGCCAAGGAGCAAATTACAGAGCTAACTTCTATGTGCATGGTTTACTGATCTGTGAG-------CTTCAAGGAAACTGCACCAGCCCCTATAGTTTGGCAGTCCAGACTACCTTTTCATCTGCGTAATTGGGCCACGAGGGCACAGTTAATATTCAATTTATATTAATAGGAAGACAAAGAACATGATGTCCCAGCTCCATATTGAAGTAATGGgcatttcaaaatattctacctggtaattataaataaatcagTTTTCCCATGACCCAGCCAGGATGATGTCGCTAATTCACTGTGCATTTCCTCATAATTTATCCTGAGAAAGTTCA--GTGCTGCCATGTGCACTTATA-TCA-CAGAGTATACAAGGATGCT-CCTTCATAAAACACCCAGCTGtcttcatccatgctgttgcccATCT---TTTCTTAACAGGTGAAAGTCATGCTTCGCATCTGTTCCACCTTGGCTCGAGATACCTCAGAATCCAGCTCTTTCTTAAAGGTGGACCCACGGAAGAAGCAGATCACCTTGTACGATCCCCTGACTTGTGGAGGTCAAAATGCCTTCCAAAAGAGAGGCAACCAGGTTCCTCCAAAGATGTTTGCCTTTGATGCAGTTTTTCCCCAAGACGCCTCCCAGGTGGGTATCAGCCCCCTCTCAGGCTCG-GTAATGTTGA-----TTAAAGA--AGCGTTTCCTCATTCACAAGGG-CCTTGAGCTGGGAGGGTGTCTTCTGGAGCGTTTGGATGGACCAGTTCCTTCA------------------GGAGTCAATCTGAGCTCCATTGAATGGTCCAGTGCTTTTGAGTTACTGGTGTCAGA----CTTTGGGCAGGATCAGTGTGCAGGAATTTCAATACAACATGTCCTTGAGGAGCAGGAAGTGCGAGCCAGTCAGTG--GATCAC---ACACAGAAGCAGGAAGAT i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82630274 1620 + 85787240 GTGCAACCACCCCTCCTCCCCAAAACCGCGTGAC--AGATTTCATCCGACTTCACAACTAATGGGACAAGGAGGACAAGGCACAGAGAGGAACAGAGAAATAATCCTTGTGCATACCTTCTGAATTT-CCATA---TATTACTAAAATTACCCATATCTG----TGTCTG----TCCTG-CCGCTctgtacgttacatatctttgcatcccc----catgcctagcacagtgcccggca------------------------catagtaggtgctc----aaagtgcccatcatttgttgaaCTGAGCTCACAACACAGAAATAGA----------GAGCCAGTTA--GAGCAAAT----------------------------------------GCTG-TCCCTTTTCCCAGGACTG------------------TAGCTTCCAGACCCGTGT----------------------------------GAGGCCTCAGCCTGATTTCTGTTCATCCGAGGACCCCAAGGCAAACTGTGCATTTCCATCAGCGCCTCACTTGCCTGCAGGAGCGGGAC-GGGTTGGTGGTGGGCACCAGAGGTGCTCAGTGTTCAGTCACTCAGAAAGTGGGTTAAAGGGCAGCGC--CTCCTGCTCCCT----------------------------CCAGTGATGCACTTCCATTCTCTGAAACGACAACTTCTCTGCACTCACTTAATGGGATCCCAAATAACACG-TTGCAGACCAGTCTTTTATCACTGTTGCCCCTTGGAACACATTTCGAATGCTGGCCATTAAAAGCAGGCCATTTCACAGTTCTTTAATGATGACACTAATAACTGT-GGATTTTTGTCTCCCAGAGTCGTGATGAGCTGAGCCAAGGAGCAAATTACAGAGCTAACTTCTATGTGCATGGTTTACTGATCTGTGAG-------CTTCAAGGAAACTGCACCAGCCCCTATAGTTAGGCAGTCCAGACTACCTTTTCATCTGCATAATTGGGCCACGAGGGCACAGTTAATATTCAATTTATATTAATAGGAAGACAAAGAACATGATGTCCCAGCTCCATATTGAAGTAATGGGCATTTCAAAATATTCTACCTGGTAATTATAAATAAATCAGTTTTCCCATGACCCAGCCAGGATGATGTCGCTAATTCACTGTGCATTTCCTCATAATTTATCCTGAGAAAGTTCA--GTGCTGCCATGTGCACTTATA-TCG-CAGAGTATACAAGGGTGCT-CCTTCGTAAAACACCCAGCTGTCTTCATCCATGCTGTTGCCCATCT---TTTCTTAACAGGTGAAAGTCATGCTTCGCATCTGTTCCACCTTGGCTCGAGATACCTCAGAATCCAGCTCTTTCTTAAAGGTGGACCCACGGAAGAAGCAGATCACCTTGTACGATCCCCTGACTTGTGGAGGTCAAAATGCCTTCCAAAAGAGAGGCAACCAGGTTCCTCCAAAGATGTTTGCCTTCGATGCAGTTTTCCCACAAGACGCCTCCCAGGTGGGTATCAGCCCCCTCTCAGGCTCAGGCAATGTTGA-----TTAAAGA--AGCGTTTACTCATTCACAAGGGCCCTTGAGCTGGGACGGTGTCTTCTGGAGCGTTCGGATGGACCAGTTCCTTCA------------------GAAGTCAATCTGAGCTCCACTGAATGGTCCAGTGCTTTTGAATTACTGGTGTCAGA----CCTTGGGCAGGATCAGTGTGCAGGAATTTCAATAAAACATGTCCTTGAGGAGAAGGAAGTGTGAGCCAGTCAGTG--GATCAC---ACACAGAAGCAGGAAGAT i chlSab2.chr25 I 1 C 0 s calJac3.chr19 14340332 1622 - 49578535 TTACAGCCACCCCTCCACCCCCAAATTACACGACAGAGATTTCATCAACTCCAACAACTGATGAGACAAAGAAAACAAAACAC--AGAGGACTTTAGAAATAATCCTCGTGCATTCCTTCAGAATTTGCCATA---TATTACTCAGATGACCTGTAGCTG----TGTCTGGCTATCCTG-CTACTctatgcattacttatctttggatcccg----catgcctagcacagtgcctggcacatagtaggtctccacataagtgCCATAGTAGGTGCTTCAAGTAAGTGCCCATTATTTGTTGGACTGAACTGACAACACAGTCACAAG----------GAGCTGCTTA--GAACAAAT----------------------------------------GCCG-TCCCTTTCCCCAGGACTG------------------TAGCCTGCAGACCTGTGC----------------------------------GAGGCTTCAGCTTGATTTCTGTTCACCTTGGGCCCCCAAGGCAGACTGTGCATTTCCGTAAGCACCTCACTCACCTGCAGGAGTGGGGCCGGGTTGGTGGTGAGCACCAGAGGTGCTCAGTGTTCAGTTACTCAGAAAGCGGGttaaagggcagtg---ctcctgcttcct----------------------------ccagagatgtccttctgttctctgaaatggcaa---ctccacgctcatttaatgggatcccagataacatg-ttgcaaaccggtccttgatcactgttgccccttggaacgcgtttccagtGCTGGCCATTAAAAGCAGGCCATTTCACGGCGCTTTCATGATGACACTAATAACTGT-GGATTTTTGTCTCCCGGAGTCCTGATGAGCTGGGCCGGGGAGTACATTATGGAGCTAACTTTTATGTGCATGGTTTATTGATCTGTGAG-------CTTCAAGGAAACCACACCAGCCTCTACGGTTTGGCAGCCCAGATTACCTTTTCATCTGTGTAATTGGGCCATGCGGGCACAGTTAATATTCAATTTATATTAATAGGAAGACTAAGAACATGATGTGCCGTCTCCATATTGAAGTAATGGGCATA---------TCCACCCGGTCAGTATAAATAAATCCGTTTCCCCACGGCTTGGCGAGGATGGTGTTGCTGATCCACTGTGCATTTCACCCTCATTTATCCTGAGGAAGCTCA--GTGCCACCATGTGTATTTATACTCG-CAGAGTACACAAGGGT---------------------GCTGTCTTCATCCCTGCTGTTGCCCCTCT---TTTCTTAACAGGTGAAAGTCATGCTTCGCGTCTGTTCTACCTTGGCTCGAGATACCTCAGAATCCAGCTCTTTCTTAAAGGTGGACCCACGGAAGAAGCAGATCACCTTGTATGATCCCCTGACTTGTGGAGGTCAAAATGCCTTCCCCAAGAGAGGCAACCAGGTTCCTCCAAAGATGTTTGCCTTCGATGCGGTTTTCCCACAAGATGCTTCTCAGGTAGGTATCGGCCTCCTTTCAGGCTCAGGCAATGTTGA-----TTAAAAA--AGCGTTCGCTCATTCACAAGGACCCCTGAGCTGGGAGGGTGTCTTCTGGAGCATTCTGATGGACCAGTTCCTCCA------------------GGAGTCAGTCTGAGCTCCCTCGAATACTCCAGTGCTTTTGAATTACTGGTGTCAGA----CCCTGGGCAGGACCTGCGTGCAGGGATTTCAAAAAAATATGTCCTTGGGGAGAAGGAAGTATGAGCCAGTCAGTG--GATCAC---ACACAGAAGCAGGAAGGT i calJac3.chr19 I 282 I 4 s mm10.chr1 178863678 1651 + 195471971 TTATGACTATGCCTTGCCCCAA-----GCCTGATGGGAGTTTCATCAGTACTAACAGCTCGTCAGACAAAGAGGAC-----------AGGAGGTGAGAAATCACCCTCGGGCA----TTCACAACTTGCCACGTTCTATCACTAAAATTTTCTCCCTCTG----CAGCTc----tctagcctgccctacgcacta--------tgtgccctt----catgcctagcatagtgctgggca------------------------catagtaagaactcaacaaaAGGGACAGTCACATACCGGACTAAATAAACAGCATAGTTAAAAAAAAAATAGCTGAGTCAACAA--aacaaaacaaccaaaaaccaaccaaccaaccaaacaaacaaACCCAGAGCTGAGTCCCTCTCCCAGAGCTGAGTCCCTCTCCCAGAGCTAAGCCTCCGGGTCTGTGC------------------------------------TGCTCCAGCTTGATTTCTGCATACCTTAAGACTACAAAGCAGATGGTCCATTTCTGT-----CCTCAGTCAT-----GGGGCGGAGCAGGGCTGGTCTCAAGCACTAGAGATGCTTA-TGTTCCCTGACTCCGAAGGTGGATTAGAGCATATGCC--CCCCTGATTCCA----------------------------ACCAAGACACGCTTTCATCCCCACAAATGA-GGCTTCTCCACGCTCACGTAATGGGATCCCAAATAACATG-ATGCAAACCAATCCTTTATCACACTTGCCCCTTGGAACGCATTTCAAATACTGGCCATTAAAAACAGGCCATTTCACAGAGCTTTAATGATGACACTAATAACTGT-GGATTTTTGTCTCCCAGAGCCCCGATGAGCCGAGCTGGGGAGTAAATTATGAAGCTAACTTTTATGTGCATGGTTTATTGATCTTTGAG-------CTTCAAGGGAACTGCACCAGCCCCTATAGCCTGACAGTCCAGATTAGCTTTTCATCTATGTAATTGGGCCACCAGGGCACAGttaatttttaatttatattaataGGAAGACAAAGAACACAGTGCGCCTTCTCTGCATTCAAGTAATGGACATATCAAAACATTCTACCTGGTAATTATAAATAAACCATTCTTCCCATGACCCAGTGAGGGTTGGCTTACAGGTTCGTTGTGTATTTCACCATAATGTATCATGAGGAAGTTCC--CCACTGCCATGAATATTTATA-CCA-TCACATGCAGAAGGCTACTCCCATCGTTAAGTAGCCCGCTCT-TTAATCCGTG----------TTT---GGTTTTAACAGGTGAAAGTCATGCTGCGTATCTGTTCCACATCAGCTCGAGATACCTCAGAATCCAGCTCTTTCCTGAAGGTGGACCCACGGAAGAAGCAGATCACCTTGTATGATCCCCTGACTTGCGGAGGTCAAAATGCCTTCCAGAAAAGAAGCAGCCAGGTTCCTCCGAAGATGTTTGCCTTCGATGCTGTTTTCCCACAAGATGCTTCTCAGGTGGGTTAGAGTTCCCTCG-GGGCTCACCTACCATTGA-----TTAAGGG--GGTG----------------------TGAGCCTGTAGGGTTTCTTCTGGGACACTCTAACGAACGAGTTCCTCCATCCATATTATTATGTTTGGAAGTCATTCTGAGCTCCACGGAATACCCCAGCTCTTCCAAGTTACTGGTATGGTAGTTTCCCTGGAAAGTTCTAGTGTGGTGGGATTTCAGCAAGTTATATACTTGGAgggctgaggaggtggctcagttggtg--aagtgcttgccacacaaacctgaagat i mm10.chr1 C 0 I 407 s canFam3.chr7 36443744 1597 + 80974532 ------CAACCCCTCTCCCCCAAAG--GCCTGGCTGACATTTCATCAGCCCTGACAGTTGATCCGATGAGGAAGGTGAGACAGACAGAGGAGCTTAAAAAGAACCC-----------TGCAGGATTCGCCACGTGGTATTACAAAAATCATCTCTGCCTG--TCTGTCCG----TC-TG-CCGCTCTATGCATCACCAGCCTTTGCATCCCCAGTGCCTGCCTAGCCTGAGGCCTGGCA------------------------CTGAGCAGGGGCTCAACA-----------CATTTGC---ACTGAGCTGGCAACACAGGGACAAA----------G-GCTGGCAAGGGAGCAAAT----------------------------------------GCTG-T-CTGTTCCCCAGGACCT------------------GTGCCTGCAGAGCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTTCAGCTCAACTTCTGCTCACTTTAAGGCTCTGGGACAGGCAGTTTATTCCT-------------------------------------------------------GTGGTCCATGGTCCCTGACTCGGGAGGCAGGTTAA----TAATGCTGCCCCCTTTCCCA----------------------------CCGAGACAGCGCTTTCGTTCTCTGAGATGACAACTTCTATGCACTCACTTAATGAGATCCCAAATAATATG-TTTCAAACAAATCTTTTATCACCATTGCTCCTTGGAACCCATTTCAAATGCTGGCCATTAAAAACAGTCCATTTCATAAGCCTTTAATGATGACACTGATGACTGTGGGGGTTTTGTCTCCAAGAGTCCTGATGAGCAGAGGCCAGGAGTAAATTACGGAGCTAACTTTTATGTCCATGGGTTATTGATCTGTGAGTAGTTCTCTTGAAGGGAACTGCACCAGCCCTGAAACCTCAGCCATCCAGACTCCTTTTTCATCTATGTAACTGGGCCACCAGCGTACAGTT----TTCAATTTATATTAATAAGCAGACAAAGGACATGGTGTGCCGTTTCCATAATAAAGCAATGGACGTATCAAAATACTCCGCCTGATAGCTACAAATAAGTCAGTTTTCCCTTGACCCTTTGAGGATTATGGTGCTGCTTC-------AGTTCATCATAATTTACCAGGAGAAGGCACC--CTGCTGCTGTGCATGC-TATG-TCTCCAGAGTCTGGAAGGCTGCT-CCTTCGAGATGTATCCAGCTTTCTCATTCTGTGTCCTTTCCTGCCTTTGTTTCTTGGCAGGTGAAAGTCATGCTTCGCATCTGTTCTACATTGGCTCGTGATACCTCAGAATCCAGCTCCTTCTTAAAGGTGGACCCACGGAAGAAACAGATCACCCTCTATGATCCCTTGACGTGTGGAGGTCAAAACGTCTTCCAAAAGAGGGGCAACCAAGTTCCTCCTAAAATGTTTGCCTTTGATGCTGTTTTTCCACAAGATGCTTCTCAGGTAGGTGTCACTGCCCGGTTGGGCTCAGGCAACATTGACCAGTTTCGAGA--AACTTTTACT--GTCTCTAGGACCTGTGAGATAGGTGGGTGTCTTCCAGAGTGCTCTGTTATGTCAGTTCCTCCA---CTGGTACAACTTTTGGAAATCCATCAGAGCCCCCTTGAGTGGTC-AGTCCTTTTGAATTATTGGTGTCTGA----CTTTGGGCAGGATCGCTGTGTCAGGATTTCAACAAGACATATCCTTGGAGAGAAGGAAGAGTGAGCCAGTTAGGG--CATGGC---TTACATAAACAGGGAGAC i canFam3.chr7 C 0 C 0 a score=86032.000000 s hg38.chr1_KI270759v1_alt 297364 27 + 425601 ----AACAGAAAGGGA-----CAAGGACAA-TGCGTC s panTro4.chr1 225054213 27 + 228333871 ----AACAGAAAGGGA-----CAAGGACAA-TGCGTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226423116 27 - 229942017 ----AACAGAAAGGGA-----CAAGGACAA-TGCGTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140306600 27 - 143122389 ----AACAGAAAGGGA-----CAAAGACAA-TGCGTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17018131 27 - 229590362 ----AACAGAAAGGGA-----CAAGGACAA-TGCGTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223782140 27 - 227556264 ----AACAGAAAGGGA-----CAAGGACAA-TGCGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16832355 27 - 220367699 ----AACAGAAAGGGA-----CAAGGACAA-TGCGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82631894 27 + 85787240 ----AACAGAAAGGGA-----CAAGGACAA-TGCGTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14341958 28 - 49578535 ----GACAGGAAGGGA-----CAAGGACAGCTGTGTC i calJac3.chr19 I 4 C 0 s canFam3.chr7 36445341 37 + 80974532 AGAAGGCAGAAGTGGAAGTTTTAGGAACACCTGCATC i canFam3.chr7 C 0 C 0 e mm10.chr1 178865329 407 + 195471971 I a score=917391.000000 s hg38.chr1_KI270759v1_alt 297391 283 + 425601 AAGGTGCTGGTGACA-----GATCTAGTAGGACCCTACTCCTGCCTGGGCATT---GTACGAAGGG--------AAAAAAAAAAGTGTTTCAGGGAGCT-GATTAGAATTAGGCCATCTCCTAGG-CCCTGTATAAGCACACTGGGGTTGAGGGCAAGCCTGTAGCCCTAGTAAGGAACCAGAGTGCAAGGCAGGGAAACCGAGGCTGACATGCATCCTGTGGCCTG-----GCTCAGTGGAGTGAAGGGGAAGAAGAGAGGCTCAGGGACAGGTGTTGTATTCGCT--GAattgctgccttacaaat s panTro4.chr1 225054240 282 + 228333871 AAGGTGCTGGTGACA-----GATCTAGTAGGACCCTACTCCTGCCTGGGCATT---GTACGAAGGG--------AAAAAAAAA-GTGTTTCAGGGAGCT-GATTAGAATTAGGCCATCTCCTAGG-CCCTGTATAAGCACACTGGGGTTGAGGGCAAGCCTGTAGCCCTAGTAAGGAACCAGAGTGCAAGGCAGGGAAACCGAGGCTGACATGCATCCTGTGGCCTG-----GCTCAGTGGAGTGAAGGGGAAGAAGAGAGGCTCAGGGACAGGTGTTGTATTCGCT--GAattgctgccttacaaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226423143 280 - 229942017 AAGGTGCTGGTGACA-----GATCTAGTAGGACCCTACTCCTGCCTGGGCATT---GTATGAAGGG--------AAAAAAA---ATGTTTCAGGGAGCT-GATTAGAATTAGGCGATCTCCTAGG-CCCTGTATAAGCACACTGGGGTTGAGGACAAGTCTGTAGCCCTAGTAAGGAACCGGAGTGCAAGGCAGGGAAACCGAGGCTGACATGCATCCTGCGGCCTG-----GCTCACTGGAGTGAAGGGGAAGAAGAGAGGCTCAGGGATAGGTGTTGTATTCGCT--GAattgctgccttacaaat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140306627 280 - 143122389 AAGGGGCTGGTGACA-----GATCTAGTAGGACCCTACTGCTGCCTGGGCATT---GTACGAAGGG--------AAAAAAA---ATGTTTCA-GGAGCT-GATTAGAATTAGGCAATCTCCTAGGACCCTGTATAAGCACACTGGGGTTGAGGGCAAGTCTGCAGCCCTAGTAAGGAAGTGGAGTGCAAGGCAGGGAAACCGAGGCAGACATGCATCCTGTGGCCTG-----GCTCAGTGGAGTGAAGGGGAAGAAGAGAGGCTCAGGGATAGGTGTTGTATTTGCT--GAattgctgccttacaaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17018158 280 - 229590362 AAGGGGCTGGTGACA-----GATCTAGTAGGACCCTAGTCCTGCCTGGGCATT---GTACGAAGGG---------AAAAAA---ATGTTTCAGGGAGCT-GATTAGAATGAGGCAATCTCCTAGGACCCAGTATAAGCACACTGGGGTTGAGGGCAAGTCTGTAGCCCTGGTAAGGAACCGGAGTTCAAGGCAGGGAAACCGAGGCTGACATGCATCCTGTGGCCTG-----GCTCAGTGGAGTGAAGGGGAAGAAGAGAGGCTCAGGGATAGGTGTCATATTCGCT--TAattgctgcattacaaat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223782167 280 - 227556264 AAGGGGCTGGTGACA-----GATCTAGTAGGACCCTAGTCCTGCCTGGGCATT---GTACGAAGGG---------AAAAAA---ATGTTTCAGGGAGCT-GATTAGAATGAGGCAATCTCCTAGGACCCAGTATAAGCACACTGGGGTTGAGGGCAAGTCTGTAGCCCTGGTAAGGAACCGGAGTTCAAGGCAGGGAAACCGAGGCTGACATGCATCCTGTGGCCTG-----GCTCAGTGGAGTGAAGGGGAAGAAGAGAGGCTCAGGGATAGGTGTTATATTCGCT--TAattgctgcattacaaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16832382 281 - 220367699 AAGGGGCTGGTGACA-----GATCCAGTAGGACCCTACTCCTGCCTGGGCATT---GTacgaaggg--------aaaaaaa---atgtttcagggAGCT-GATTAGAATGAGGCAATCTCCTAGGACCCAGTATAAGCACACTGGGGTTGAGGGCAAGTCTGTAGTCCTGGTAAGGAACTGGAGTTCAAGGCAGGGAAACCGAGGCTGACATGCATCCTGTGGCCTG-----GCTCAGTGGAgtgaaggggaagaagagaggcTCAGGGATAGGTGTTATATTCGCT--TAATTGCTGCATTACAAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82631921 278 + 85787240 AAGGGGCTGGTGACA-----GATCCAGTAGGACCCTACTCCTGCCTGGGCATT---GTACGAAGGG----------AAAAA---ATGTTTCAGGGAGCT-GATTGGAATTAGGCAATCTCCTAGGACCCAGTATAAGCACACTGGGGTTGAGGGCAAGTCTGTAGCCCTGGTAAGGAACCGGAGTTCAAGGCAGGGAAACCGAGGCTGACATGCATCCTGTGGCCTG-----GCTCAGTGGAGTGAAGGGGAAG-AGAGAGGCTCAGGGATAGGTGTTATATTCACT--TAattgctgcattacaaat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14341986 282 - 49578535 AAGGTGCTGGTGACG-----GATCTAGGGGGAGCCTACTCCTGCCTGGGTTCCTGGGTGCGGGCGT--------TATACAA---ATGCTTCAGGGAGCT-GGTTAGAATTAGGCACTATCCTAGGACCCTGTGTAAGCACACAGGGGTTGAGGGCAAATCTATAGTCCTGGTGAGGAACCGGAATATAAGGCAGGGAAAC--AGGGTGACGTGCGTCCTGTGGCCTG-----GCTCAGTGGAGTGAAGGGGAAGAAGAGTGGCTTGGGGATAGGtgttacattcgtt--tacttgctgcattacaaat i calJac3.chr19 C 0 C 0 s mm10.chr1 178865736 256 + 195471971 AACGTGCTGACAACT-----GACCTGTTAGGATTCTCCTCCTGACTGGGCTTT---G---GGAGGCCATGTAACAGGGAAA---ATATTTCAGGTAACT-GGATTAAA-------GTCTCATAG--CCATG-----------GGGAGTGGGAGGCAGGATTATAGCCCCAGTGAGGAAATGATGTGCTCAGTAGGGAAAGAGAGGTTGAAACACA-CCTGTGGCCAG-----AACCAGTGGAGAAACGAGGAACGGAAGAG-----------TGTGTGGTATCAGTCAGCACTCGCTGCATGACAAGT i mm10.chr1 I 407 I 81 s canFam3.chr7 36445378 240 + 80974532 ---GAGGTGGTGGCATCTGTGGTCCACTAGGACACCACTCCTGCCTGGGTTTC---T------GGG------------------GTG--TCAAGGAGCTGGGTTCGAGTCAGGCA----------------------------GGGTTCTAGGGTTAGTATATAACCATAGTGAGGAACCGGAGTGGTAGGCAGGGAAGCTGAGGCTGATGTG---CCTGTGGCCAGAAGCAGCAGAGTGGAGTGGAAGGGAGGAAGAGGGTCT-AAGAATAGCTCTTGTAttaact----attgctgcattacaaac i canFam3.chr7 C 0 C 0 a score=2030760.000000 s hg38.chr1_KI270759v1_alt 297674 633 + 425601 caccctaaaattcagt-gcttaatacagtaagcatttatcattgctc--------atcggtcagctgagcagctcttctggtcctagctcagctcatttttatgtctgtgatcagctgtggg-ttgggcaggcagctctgtggatcttggctggatatcagccaggcgaaataagatcatcctatatcacaccataggcacatgtctttgggggttggctggccttacactggtgtagaatagccttgaccaggtcagctggtctctcttccacattgtcggtcgtcatccagcaggctagcttgggctagttctcaaggcagtttccaggacccatgcatgcaggtctctggaggcctaagctcagaattgacccaatatcacttctgctggattctactggcccagcttcatgagatggagaagagattgcttctaatgattggacgagct-ccaagtcacattgcaagggagttgcacccaggctggggtggagaattggggccatttttattaatctactaTGAGCATAATTGGGAGGCTA-CTTGGGGGCCCAGGGTACCAAGATTACTGAGCCATGGGCAGCCAATGAACTGCAGACCTCACCAGATGCTGCAACTAAAGCTGCTAGT------AGATATCTGTT s panTro4.chr1 225054522 633 + 228333871 caccctaaaattcagt-gcttaatacagtaagcatttatcattgctc--------atcggtcggctgagcagctcttctggtcctagctcagctcatttttatgtctatgatcagctgtggg-ttgggcaggcagctctgtggatcttggctggatattagccaggcaaaataaaatcatcctatatcacaccataggcacatgtctttgggggttggctggctttacactggtctagaatagccttgaccaggtcagctggtctctcttccacattgtctgtcatcatccagcaggctagcttgggctagttctcaaggcagtatccaggacccatgcatgcaggtctctggaggcctaagctcagaattgacccaatatcacttctgctggattctactggcccagcttcatgagatggagaagagattgcttctaatgattggacgagct-ccaagtcacattgcaagggagttgcacccaggctggggtggagaattggggccatttttattaatctactaTGAGCATAATTGGGAGGCTA-CTTGGGGGCCCAGGGTACCAAGATTACTGAGCCATGGGCAGCCAATGAACTGCAGACCTCACCAGATGCTGCAACTAAAGCTGCTAGT------AGATATCTGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226423423 634 - 229942017 caccctaaaattcagc-gcttaacacaataagcatttatcattgctc--------atcggtcagctgagcagctcttctggtcctagatcagctcatttttatgtctatgatcagctgtgggtttgggcaggcagctctgtggatcttggctggatattagccaggcaaaataaaatcatcctatatcacaccataggcacatgtctttgggggttggctggctttacactggtctagaatagccttgaccaggtcagctggtctctcttccccattgtctgtcatcatccagcaggctagcttgggctagttctcaaggcagtatccaggacccatgcatgcaggtctctggaggcctaagctcagaattgacccaatatcacttctgctggattctactggcccagcttcatgagatggagaagagattgcttctaatgattggacgagct-ccaagtcacattgcaaggtagttgcacccaggctgtggtgaagaattggggccatttttattaatctactaTGAGCATAAATGGGAGGCTA-CTTGGGAACCCAGGGTACCAAGATTACTGAGCCATGGGCAGCCAATGAACTGCAGACCTCACCAGATGCTGCAACTAAAGCTTCTAGT------AGATATCTGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140306907 629 - 143122389 caccctcaaattcagg-gcttaacacaataagtattaatcattgctc--------atcggtcagctg---agctcctctggtcctagctcagctcattttcatgtctgtgatcagctgtggg-ttgggcaggcagctctgcagatcttgactggatattagccaggcaaaataaaatcatcctatatcacaccacaggcacatgtctttgggggttggctggctttacactggtctagaatagccttgaccaggtcagctggtctctcttccacattgtctgtcatcatccagcaggctagcttgggctagttctcaaggcagtatccaggacccatgcatgcaggtctctggaggcctaggctcagaattgacccaatgtcacttctgctggattctactggcccagcttcatgagacggagaagagattgcttctaatgattggacaagct-ccaagtcacattgcaagggggttgcccccaagctggggtggagaattggggccatttttattaatctactaTGAGCATAATTGGGAGGCTA-CTTGGGGGCCCAGGGTACCAAGATTACTGA-CCATGGGCAGCCAGTGAACTGCAGACCTCACCAGATGCTGCAACCAAAGCTTCTAGT------AGATATCTGTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17018438 633 - 229590362 caccctaaaattcagt-gcttaacacaataagcatttattattgctc--------attggtcagctgagcagctcttctggtcccagctcagctcattgttatgtctatgatcagctgtggg-ttgggtaggcagctctgtggatcttggctggatattagccaggcgaaataaaatcatgctatatcacaccacaggcacatgtctttgggggttggctggctttccactggtctagaatagccttgaccaggtcggctggtctctcttccacattgtctgtcatcatccagcaagctagtttgggctagttttcaaggcagcatccaggacccatccatgcaggtctctggaggcctaagctcagaattgacccaatatcacctctgctggattctactggcccagcttcatgagatggagaagagattgcttctaatgattggatgagct-ccaagttacattgcaagggggttgcagccaggctggggtagagaattggggccatttttattattctacTGTGAGCATAATTGGGAGGCTA-TTTGGGGGCCCAGGGTACCAAGATTACTGAGCCATGGGCAGCCAGTGAACTGCAGACCTCACCAGATGCTGCAACTAAAGCTTCTAGT------AGATATCTGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223782447 633 - 227556264 caccctaaaattcagt-gcttaacacaataagcatttattattgctc--------attggtcagctgagcagctcttctggtcccagctcagctcattgttatgtctatgatcagctgtggg-ttgggtaggcagctctgtggatcttggctggATATTAGCCAGGCGAAATAAAATCATGCTATATCACACCACAGGCACATGTCTTTGGGGGttggctggctttccgctggtctagaatagccttgaccaggtcggctggtctctcttccacattgtctgtcatcatccagcaagctagtttgggctagttttcaaggcagcatccaggacccatccatgcaggtctctggaggcctaagctcagaattgacccaatatcacctctgctggattctactggcccagcttcataagatggagaagagattgcttctaatgattggatgagct-ccaagttacattgcaagggggttgcagccaggctggggtagagaattggggccatttttattattctacTGTGAGCATAATTGGGAGGCTA-TTTGGGGGCCCAGGGTACCAAGATTACTGAGCCATGGGCAGCCAGTGAACTGCAGACCTCACCAGATGCTGCAACTAAAGCTTCTAGT------AGATATCTGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16832663 633 - 220367699 CACCCTAAAATTCAGT-GCTTAacacaataagcatttattattgctC--------ATCGGTCAGCTGAGCAGCTCTTCTGGTCCTAGCTCAGCTCATTGTTATGTCTATGATCAGCTGTGGC-TTGGGTAGGCAGCTCTGTGGATCTTGGCTGGATATTAGCCAGGCGAAATAAAATCATGCTATATCACACCACAGGCACATGTCTTTGGGGGTTGGCTGGCTTTCCGCTGGTCTAGAATGGCCTTGACCAGGTCGGCTGGTCTCTCTTCCACATTGTCTGTCATCATCCAGCAAGCTAGCTTGGGCTAGTTTTCAAGGCAGCATCCAGGACCCATCCATGCAGGTCTCTGGAGGCCTAAGCTCAGAATTGACCCAATATCACCTCTGCTGGATTCTACTGGCCCAGCTTCATGAGATGGAGAAGAGATTGCTTCTAATGATTGGATGAGCT-CCAAGTTACATTGCAAGGGGGctgcacccaggctggggtggagaATTGGGGCCATTTTTATTAATCTACCGTGAACATAATTGGGAGGCTA-CTTAGGGGCCCAGGGTACCAAAATTACTGAGCCATGGGCAGCCAGTGAACTGCAGACCTCACCAGATGCTGCAACTAAAGCTTCtagt------aaatatctgtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82632199 634 + 85787240 caccctaaaattcagt-gcttaacacaataagcatttattattgctc--------atcggtcagctgagcacctcttctggtcctagctcagctcatttttatgtctatgatcagctgtgag-ttgggtaggcagctctgtggatcttggctggATATTAGCCAGGCGAAATAAAATCATGCTATATCACACCATAGGCACATGTCTTTGAGGGttggctggctttccactggtctagaatagccttgaccaggtcggctggtctctcttccacattgtctatcatcatccagcaagctagcttgggctagttttcaaggcagtatccaggacccatccatgcaggtctctggaggcctaagctcagaattgacccaatatcacctctgctggattctactggcccagcttcatgagatggagaagagattgtttctaatgattggatgagct-ccaagttacattgcaagggggttgcacccaggctggggcagagaattggagccatttttattaatctacTGTGAGCATAATTGGGAGGCTACTTTGGGGGCCCAGGGGACCAAGATTACTGAGCCATGGGCAGCCAATGAACTGCAGACCTCACCAGATGCTGCAACTAAAGCTTCTAGT------AGATATCTGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14342268 606 - 49578535 caccctcaaattcagt-gcttaacacaagaagcatttgttattgctc--------atagggcagctcag-----cttctgttcctagctcagctcatgtttatgtctatcatcagctgtggg-ttgggtaggcagctctgtggatcttggctggat--------------------taatcctatattatactgtaggcacatgtctttg-gggctggctggctttacgctggtctagaatagccttgaccaggtcagctggtctctcttccacattgtctctcatcatccagcaggcaagcctgggctagttcttaaggtgctgtccaggacccaggcgtacaggtctattgaggcctaagctcagctctgacccaatgccacttctgctggattctactggcccagcttcaagacatggggaagagattgctcctcatgactggacgagct-ccaagtcacattgcaagggggctgtacctagactggggtggagaattggggccatttttattaatctactaTGAGCATAACTGGGAGGCTA-CTTGGGGGCCCAGGGTACCAAGATGACTGGGCCAT-GGCAGCCAGCGAACTGTAGCCCCTACCAGACGCTGCAACTAAAGCTTCTAGT------GGACATCTGTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36445618 502 + 80974532 caccctaaaattcagtggcttaaaacaataagcatctatgatttctcatgaatctatgggctggccgagcag---tcttgtttctagcttggctcact-----------------------a-atgtattggcag---------tcttggctggatgcc--------------------------atcacacg-------------tttggggactgcctggctttgggctgatctagaa-----------------------------tccacgttgtctctcattgaccagcaggctgtcttgagcttgctctcatggcaatgg-caggatccaggtacacaagcctcttgagttgttggctcagaactgacagcacatcacttctgctgctttctattggctcaaatttgaggggtgg-gaagagaccccatctcttaagtggagaagctataaagtcatattgcaaggggtatgcacacacacacaggtggagaatgatagccatactt---------ctgtga--ctaatttGGAGGCTT-CTTGGGGGCCCAGAGCACCAAGATTCCTGGACCAG----------------------------AGCTGCTGGAGCCAA---TCCCAGTAAGAACAGATGTCTACT i canFam3.chr7 C 0 I 73 e mm10.chr1 178865992 81 + 195471971 I a score=341913.000000 s hg38.chr1_KI270759v1_alt 298307 118 + 425601 CTCCTTTGGATTCACCCTGGAGCTTTGGTGAAGATGGGCCTCTAAGTGGCACGAAACAGCACCTGTTCCTTCA-GGGGAGGGAGCAGGGACAGACGTGTAGAACTGATTGCAGAAATGA s panTro4.chr1 225055155 118 + 228333871 CTCCTTTGGATTCACCCTGGAGCTTTGGTGAAGATGGGCCTCTAAGTGGCACGAAACAGCACCTGTTCCTTCA-GGGGAGGGAGCAGGGACATACGTGTAGAACTGATTGCAGAAATGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226424057 119 - 229942017 CTCTTTTGGATTCATCCTGGAGCTTTGGTGAAGATGGGCCTCTAAGTGGCACGAAACAGCACCTGTTCCTGCAGGGGGAGGGAGCAGGGACACACGAGTAGAACTGATTGCAGAAATGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140307536 119 - 143122389 CTCATTTGGATTCGCCCTGGAGCTTTGGTGAAGATGGGCCTCTAAGTGGCACAAAACAGCACCTGTTCCTGCAGGGGGAGGGAGCAGGGACACACGTGTAGAACTGATTGCAGAAATGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17019071 118 - 229590362 CTCATTTGGATTCGCCCTGGAGCTTTGGTGAAGATGGGCCTCTAAGCAGCACCAAACAGCACCTGTTCCTGTG-GGGGAGGGAGCAGGGACACACATGTAGAACTGATTGCAGAAATGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223783080 118 - 227556264 CTCATTTGGATTCGCCCTGGAGCTTTGGTGAAGATGGGCCTCTAAGCAGCACCAAACAGCACCTGTTCCTGTG-GGGGAGGGAGCAGGGACACACATGTAGAACTGATTGCAGAAATGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16833296 118 - 220367699 ctctcttGGATTCGCCCTGGAGCTTTGGTGAAGATGGGCCTCTAAGCGGGACCAAATAGCACCTGTTCCTGTG-GGGGAGGGAGCAGGGACACACGTGTAGAACTGATTGCAAAAATGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82632833 117 + 85787240 CTCATTTGGATTCGCCCTGGAGTTTTGGTGAAGATGGGCCTGTAAGCGGCACCAAACAGCACCTGTTCCTGTG-GGGGAGGGA-CAGGGACACACATGTAGAACTGATTGCAGAAATGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14342874 118 - 49578535 CTCATTGGGATTCACTCTGGAGCTTTGGTGAAGATGGGCCTCTGAGTGGCACCAAACAGTACCTGTTCCTGCA-GGGGATGGAGAGGGGACATGTGTGTAGAACTAACTGCAGAAATAA i calJac3.chr19 C 0 C 0 e mm10.chr1 178865992 81 + 195471971 I e canFam3.chr7 36446120 73 + 80974532 I a score=65821.000000 s hg38.chr1_KI270759v1_alt 298425 20 + 425601 ATAACCCAGGTTATAGA-ATA s panTro4.chr1 225055273 20 + 228333871 ATAACCCAGGTTATAGA-ATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226424176 20 - 229942017 ATAACCCAGGTTATAGG-ATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140307655 20 - 143122389 ATAACCCATGTTATAGG-ATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17019189 20 - 229590362 ATAACCCAGGTTACAGG-ATA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223783198 20 - 227556264 ATAACCCAGGTTACAGG-ATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16833414 20 - 220367699 ATAACCCAGGTTACAGG-ATA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82632950 20 + 85787240 ATAACCCAGGTTATAGG-ATA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14342992 21 - 49578535 ATAGCCCAGGTCACAGGTATA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36446193 21 + 80974532 ATAACCCAGGTTATGTGTATA i canFam3.chr7 I 73 C 0 e mm10.chr1 178865992 81 + 195471971 I a score=3856659.000000 s hg38.chr1_KI270759v1_alt 298445 1227 + 425601 TA---GCCT-ACTTTGCCT---------------GGAGTT--------------TGCA--TCTTTCTGGTAAGTTTCTAGTGCTTATCAAGATTTACATTAAACAGTGTATAGGATAATAACTAATAATCTATAGC-------AGAACCTGACGACAACAGTGCGAATAGTTACCATTTGCAGCCTCTGTGAATTTCCTCCAGGCTGCATCTGAGTAGAGGAGGTGGCGATGTTCTCACGGGCTCCTATATTACACCGTGGGCACACAGCACATGTTACAGGCTCCATTCATTAAGAAGTTGAGCATGCGGTTTCCC-CAAAGAGTTTTA-CCC-AAGAAGACAAAGTACTTTATGAATAAG-TTCTATGGTTTCTCTCCTTATTACA-TTTTTTGTGTG--GCATATCACCCAATGGGCTCAGTAATTTAA-ACCTGACGTTTGGTCTAACAAATGGCCTACAAATAATTTCATTAACACAGTTAAAACTTTTCAGAAGCAAATCTCCACAAGTTGTAAGAATTCCAAAGCAAACCCTAAATCAAGCATGGACTATGAATGCGTTTTAGATTTATTCC----AGAAAAAGGGTCCATTTTAATTGCTAGTCTTTGTTTACATTTCACACTCGGCTGCAGAGCTCAGTATGCTCAATACTGGAGTTTCGCTCATTTCAGAATGCCTTACTTTCATTCACATTTCCAATGT-Ta-----------------taataaatta-------------------------------------------------catgtc----------------------------------------------------------------------tgtataaatttgc---------------------------------agttttcaagacatttcgtagacattaacaca--tttgactcttcctagaattc-agtggggt-aggaagagaggcactga--tgttctcatgtgacacacaaggaaaccgagactcaaagatgaagtcacttgttcaaagtcCCTTTCCCGAGCAGACGTCCTTCCTGGATTCC-------CCC-----------CGTTAACCTCTCTGTATCCTGCTCGGTATGGTGGTGTATCTTTGACCTCCTGCCATTTTATCCAATatttcctagcagtgtggcctcaggcgagtcactcaacctctctggacctcagtgtccttcctcatctgtcaggtgagga-catgaccacaatgttcctcatcaggccg-tgtgattcctcgagttgacacacaggaagtgctcacagcagagccag-----gaacacagcaagtgctcaacaaatgcgg-cta-tttttACCGTTATCACTGCCAATATTAGC-----AGCATGCTGCTGGCCAGGGCAAACTCAGCCCCA-------CAGGGTGGGCACCCCTGGAGCCCCC-AAGCCTGAAAGGAGGGAGTGTGCGG--AGTGG s panTro4.chr1 225055293 1227 + 228333871 TA---GCCT-ACTTTGCCT---------------GGAGTT--------------TGCA--TCTTTCTGGTAAGTTTCTAGTGCTTATCAAGATTTACATTAAACAGTGTATAGGATAATAACTAATAACCTATAGC-------AGAACCTGACGATAACAGTGCGAATAGTTACCATTTGCAGCCTCTGTGAATTTCCTCCAGGCTGCATCTGAGTAGAGGAGGTGGCGATGTTCTCACGGGCTCCTATATTACACCGTGGGCACACAGCACATGTTACAGGCTCCATTCATTAAGAAGTTGAGCATGTGGTTTCCC-CAAAGAGTTTTA-CCC-AAGAAGACAAAGTACTTTATGAATAAG-TTCTATGGTTTCTCTCCTTATTACA-TTTTTTGTGTG--GCATACCACCCAATGGGCTCAGTAATTTAA-ACCTGACATTTGGTCTAACAAATGGCCTACAAATAATTTCATTAACACAGTTAAAACTTTTCAGAAGCAAATCTCCACAAGTTGTAAGAATTCCAAAGCAAACCCTAAATCAAGCATGGACTATGAACGTGTTTTAGATTTATTCC----AGAAAAAGGGTCCATTTTAATTGCTAGTCTTTGTTTACATTTCACACTCGGCTGCAGAGCTCAGTATGCTCAATACTGGAGTTTCGCTCATTTCAGAATGCCTTACTTTCATTCAAATTTCCAATGT-Ta-----------------taataaatta-------------------------------------------------catgtc----------------------------------------------------------------------tgtataaatttgc---------------------------------agttttcaagacatttcgcagacattaacaca--tttgactcttcctagaattc-agtggggt-aggaagagaggcactga--tgttttcatgtgacacacaaggaaaccgagactcaaagatgaagtcacttgttcaaagtcCCTTTCCCGAGCAGACGTCCTTCCTGGATTCC-------CCC-----------CATTAACCTCTCTGTATCCTGCTCGGTATGGTGTTGTATCTTTGACCTCCCGCCATTTTATCCAATatttcctagcagtgtggcctcaggcgagtcactcaacctctctggacctcagtgtccttcctcatctgtcaggtgagga-catgaccacaatgttcctcatcaggcca-tgtgattcctcgagttgacacacaggaagtgctcacagcagagccag-----gaacacagcaagtgctcaacaaatgtgg-cta-tttttACTGTTATCACTGTCAATATTAGC-----AGCATGCTGCTGGCCAGGGCAAACTCAGCCCCA-------CAGGGTGGGCACCCCTGGAGCCCCC-AAGCCTGAAAGGAGGGAGTGTGCGG--AGTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226424196 1208 - 229942017 TAGTTGCCT-ACTTTGCCT---------------GGAGTT--------------TGCA--TCTTTCTGGTAAGTTTCTAGTGCTTATCAAGATTTACATTAAACAGTGTATAGGATAATAACTAATAACCTATAGC-------AGAACCTGATGACAACAGTGTGAATAGTTACCATTTGCAGCCTCTGTGAATTTCCTCCAGGCTGCATCTGAGTAGAGGAGATGGCGATGTTCTCACGGGCTCCTATATTACACCGTGGGCCCACAGCAC--GTTACAGGCTCCATTCATTAAGAAGTTGAGCATGTGGTTTCCC-CAAAGAGTTTTA-CCC-AAGAAGACAAAGTACTTTATGAATAAG-TTCTATGGTTTCTCTCTTTATTACA-TTTTTTGTGTG--GCATGCCACCCAATGGGCTCAGTAATTTAA-ACCTGACATTGGGTCTAATAAATGGCCTACAAATAATTTCATTAGCACAGTTGAAACTTTTCAGAAGCAAATCTCCACAAGTTGTAAGAATTCCAAAGCAAACCCTAAATTAAGCATGGACTATTAATGAGTTTTAGATTTATTCC----AGAAAAAGGGTCCATTTTAATTGCTAGTCTTTGTTTATATTTCACACTTGGCTGCAGAGCTCAGTATGCTCAATATTGGAGTTGCGCTCATTTCAGAATGCCTTACTTTCATTCAAATTTCCAATGT-Ta-----------------taataaatta-------------------------------------------------catgtc------------------------------------------------------------------------tataaatttgc---------------------------------agttttcaagacatttcatagacattaatgca--tttgactcttcctagaattc-agtggggt-aggaagggaggtattga--tgttttcatgtgacacacacggaaaccgagactcaaagatgaagccacttgttcaaagtcgcTTTCCCGAGCAGACGTCCTTCCTCGATTCC-------CCC-----------CATTAACCTCTCTGGATCCTGCTCGGTATGGTATTGTATCTTTGACTTCCCGCCATTTTATCCAATatttcctagcagtgtggcctcaggtgagtcactcaacctctctgggcctcagt-------------------gtgaggaccccgaccacagtgttcctcctcaggccc-tgtgagtcatcgagttgacacacaggaggtgctcacagcagagccgg-----gaacacagcaagtgctcaataaatgtgg-cta-tttttACTGTTATCACTGTCAATATTAGC-----AGCACGCTGCTGGCCAGGGCAAACTCAGCCCCA-------CAGGGTGGGCACCCCTGGAGCCCCC-AAGCCTGAAAGGAGGGAGTGTGCGG--AGTAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140307675 1228 - 143122389 TAGTGGCCT-ACTTAACCT---------------GGAGTT--------------TGCA--TCTTTCTGGTAAATTTCTAGTGCTTATCAAGATTTACATTAAACAGTGTATAGTATAATAACTAATAACCTATAGC-------AGAACCTGACGACAACAGTGCGAATAGTTACCATTTGCAGCCTCTGTGAATTTCCTCCAGGCTGCATCTGAGTAGAGGAGGTGGCGATGTTCTCACGGGCTCCTATATGACACCGTGGGCACACAGCACATGTTACAGGCTCCATTCATTAAGAAATTGAGCATGTGGTTTCCC-CAAAGAGTTTTA-CGC-AAGAAGACAAAGTACTTTATGAATAAG-TTCTATGGTTTCTCTCTTCATTCCA--TTTTTGTGTG--GCATACCACCCAATGGGCTCAGTAATTCAA-ACCTGACATTGGTTCTAATGAATGGCCTACAAATAATTTCATTAACACAGTTAAAACTTTTCAGAAGCAAATCTCCACAAGCTGTAAGAATTCCAAAGCAAACCCTAAATTAAGCATGGACTATTGATCCGTTTTAGATTGATTCC----AGAAAAAGGGGCCATTTTCATTGCTGGTCTTTGTGTACATTTCACACTTGGCTGTGGAGCTCGGTATGCTCATTGTAGGAGTTCCGCTCGTTCCAGAATGCCTTAC-TTCATTCACATTTCCAATGT-Ta-----------------caataactta-------------------------------------------------catgtc----------------------------------------------------------------------tgtatacatttgc---------------------------------agttttcaagacatttcatagacattagcgcatttttgactcttcctggaattc-ag-gcggt-aggaagggaggcattga--tgtttccatgtgacacacaaggaaaccgagactc-aagatgaagtcacttgttcaaagtcCCTTTCCCGAGCAGACGTCCTTCCTGGATTCC-------CCC-----------CATGAACA-CTCTGCATCCTGCTCATTGTGGTATTGTGTCTTTGACCTCCCGCCATTTTATCCAATatttcctagcagtgtggcctcaggcgagtcactcaacctctctgggcctccgtg----tcctcatctgtcaggtgagga-catgaccacagtgttccccatcaggccg-tgtgattcatcgagttgacacacggggggtgctcacagcagagccag-----gaacacagcaagtgctcaataaatgtgg-ctg-tttttACTGTTATCACTGTCAATATTAGCAGCATAGCATGCTGCTGGCCAGGGCAAACTCAGCCCCA-------CAGGGTGGGCACCCCTGGAGTCCCC-AAGCCTGAAAGGAGGGAGTGTGCAG--AGTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17019209 1197 - 229590362 TAGTGGCCT-ACTTTGCCT---------------GGAGTT--------------TGCA--TCTTTCTGATAAGTTTCTAGTGCTTATCAAGATTTACATTAAACAGTATATAGTATAATAACTAATAACCTATAGC-------AGAACCTGATGACAACAGTGCAAATAGTTACCATCTGCAGCCTCTGTGAATTTCTTCCAGGCTGCATCTGAGTAGAGGAGGTGGCGATGTTCTCACAGCCTCCTCTATTACACCGTGGGCACGTAGCACGTGTCACAGGCTCCATTCATTAAGAAGTTGAGCATGTGGTTTCCC-CAAAGAGTTTTA-CCC-AAGAAGACAAAGTACTTTATGAATCAG-TTCTACGGTTTCTCTCTTTATTACA-TTTTTTGTGTG--GCATAGCACCCAATGGGCTCGGTCATTTAA-ACCTGACATTGGGGCTAATAAATGGCCTACAAATAATTTCATTAACACAGTTAAAACTTTTCAGAAGCAAATCTCCACAAGTTGTAAGAATTCCAAAGCAAACCCTAAATTAAGCATGGACTATTAATGAGTTGTAGATTTATTTC----AGAAAAAGGGGCTGTTTTCATTGCTAGCCTTTGTTTACATTTCACACTTGGCTCCAGAGCTCAGTATGCTCAATGTTGGGGTTTCACTCATTTCAGAATGCCTGACTTTCATTCAAATTTCCAATGT-TG-----------------TTATAATtta-------------------------------------------------catgtc----------------------------------------------------------------------tgtgtaaattcgc---------------------------------agttttcgagacatttcagagacattaacgca--tttgactcttcctagaattc-agtggggt-aggaa-ggaggcattga--tgttttcatgtgacacacaaggaaaccaagactcaaagattaagtcacctgttcaaagtcTCTGTCCCGAGCAGACGTCCTTCCTGGATTCC-------CCC-----------CATTGACCTCTCTGTATCCTGCTCGGTATCCTATTGTATCTTTGACC-----------------------Cctagcagtgtggcctcaggcgagtcactcaacctctctgggctgcagtg----tcctcatctgtcaaataagaa-catgaccacagtgttcctcatcaggctg-tgtgattcatca-------acacataaggtgctcccagcagagccag-----caacacagcaagtgcttaataaatgtgg-cta-tttttACTGTTACCACTGTCAATAATAGC-----AGCATGCTGCCGGCCAGGGCCAGCTCAGCCCCA-------CGGGGTGGGCACCCCTGGAGCCCCC-AAGCCCAAAAGGAGGGAGTATGCGGCTCGTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223783218 1197 - 227556264 TAGTGGCCT-ACTTTGCCT---------------GGAGTT--------------TGCA--TCTTTCTGATAAGTTTCTAGTGCTTATCAAGATTTACATTAAACAGTATATAGTATAATAACTAATAACCTATAGC-------AGAACCTGATGACAACAGTGCAAATAGTTACCATCTGCAGCCTCTGTGAATTTCTTCCAGGCTGCATCTGAGTAGAGGAGGTGGCGATGTTCTCACAGCCTCCTCTATTACACCGTGGGCACGTAGCACGTGTCACAGGCTCCATTCATTAAGAAGTTGAGCATGTGGTTTCCC-CAAAGAGTTTTA-CCC-AAGAAGACAAAGTACTTTATGAATCAG-TTCTACGGTTTCTCTCTTTATTACA-TTTTTTGTGTG--GCATAGCACCCAATGGGCTCGGTCATTTAA-ACCTGACATTGGGGCTAATAAATGGCCTACAAATAATTTCATTAACACAGTTAAAACTTTTCAGAAGCAAATCTCCACAAGTTGTAAGAATTCCAAAGCAAACCCTAAATTAAGCATGGACTATTAATGAGTTGTAGATTTATTTC----AGAAAAAGGGGCTGTTTTCATTGCTAGCCTTTGTTTACATTTCACACTTGGCTCCAGAGCTCAGTATGCTCAATGTTGGGGTTTCACTCATTTCAGAATGCCTGACTTTCATTCAAATTTCCAATGT-TG-----------------TTATAATtta-------------------------------------------------catgtc----------------------------------------------------------------------tgtgtaaattcgc---------------------------------agttttcgagacatttcagagacattaacgca--tttgactcttcctagaattc-agtggggt-aggaa-ggaggcattga--tgttttcatgtgacacacaaggaaaccaagactcaaagattaagtcacctgttcaaagtcTCTGTCCCGAGCAGACGTCCTTCCTGGATTCC-------CCC-----------CATTGACCTCTCTGTATCCTGCTCGGTATCCTATTGTATCTTTGACC-----------------------Cctagcagtgtggcctcaggcgagtcactcaacctctctgggctgcagtg----tcctcatctgtcaaataagaa-catgaccacagtgttcctcatcaggctg-tgtgattcatca-------acacataaggtgctcccagcagagccag-----caacacagcaagtgcttaataaatgtgg-cta-tttttACTGTTATCACTGTCAATAATAGC-----AGCATGCTGCCGGCCAGGGCCAGCTCAGCCCCA-------CGGGGTGGGCACCCCTGGAGCCCCC-AAGCCCAAAAGGAGGGAGTATGCGGCTCGTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16833434 1207 - 220367699 TAGTGGCCT-ACTTTGCCT---------------GGAATT--------------TGCA--TCTTTCTGATAAGTTTCTAGTGCTTATCAAGATTTACATTAAACAGTGTATAGTATAATAACTAATAACCTATAGC-------AGAACCTGATGACAACAGTGCAAATAGTTACCATCTGCAGCCTCTGTGAATTTCTTCCAGGCTGCATCTGAGTAGAGGAGGTGGCGATGTTCTCACAGGCTCCTCTATTACACTGTGGGCACGTAGCACGTGTCACAGGCTCCATTCATTAAGAAGTTGAGCATGTGGTTTCCC-CAAAGAGTTTTA-CTC-AAGAAGACAAAGTACTTTATGAATAAG-TTCTACGGTTTCTctctttattaca-ttttttgtGTG--GCATAGCACCCAATGGGCTCGGTCATTTAA-ACCTGACATTGGGGCTAATAAATGGCCtacaaataatttcattaacaCAGTTAAAACTTTTCAGAAGCAAATCTCCACAAGTTGTAAGAATTCCAAAACAAATCCTAAATTAAGCATGGACTATTAATGAGTTGTagatttatttc----agaaaaagggGCCATTTTCATTGCTAGCCTTTGTTTACATTTCACACTTGGCTCCAGAGCTCAGTATGCTCAATGTTGGAGTTTCACTCATTTCAGAATGCCTTACTTTCATTCAAATTTCCAATGT-TA-----------------TTACAATTTA-------------------------------------------------CATGTC----------------------------------------------------------------------TGTGTAAATTCAC---------------------------------AGTTTTCAAGACATTTCAGAGACATTAACACA--TTTGACTCTTCCTAGAATTC-AGTGGGGT-AGGAAGGGAGGCATTGA--TGTTTTCATGTAACACACAAGGAAACCAAGACTCAAAGATTAAGTCACCTGTTCAAAGTCTCTTTCCTGAGCAGACGTCCTTCCTGGATTCC-------TCCCCCCTACCCCACATTAACCTCTCTGTATCCTGCTCGGTATCATATTGTATCTTTGACC-----------------------CCTAGCAGTGTGGCCTCGGGCgagtcactcaacctctctgggccgcagtg----tcctcatctgtcaaGTAAGAA-CATGACCACAGTGTTCCTCATCAGGCTG-TGTGATTCATCA-------ACACATAAGGTGCTCCCAGCAGAGCCAG-----CAACACagcaagtgcttaataaatgcag-CTA-TTTTTACTGTTATCACTGTCAATAGTAGC-----AGCATGCTGCCGGCCAGGGCCAGCTCAGCCCCA-------CGGGGTGGGCACCCCTGGAGCCCCC-AAGCCCGAAAGGGGGGAGTGTGCGG--CGTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82632970 1205 + 85787240 TAGTGGCCT-ACTTTGCCT---------------GGAGTT--------------TGCA--TCTTTCTGATAAGTTTCTAGTGCTTATCAAGATTTACATTAAACAGTATATAGTATAATAACTAATAACCTATAGC-------AGAACCTGATGACAACAGTGCAAATAGTTACCATCTGCAGCCTCTGTGAATTTCTTCCAGGCTGCATCTGAGTAGAGGAGGTGGCAATGTTCTCACGGGCTCCTCTATTACACCGTGGGCACGTAGCACGTGTCACAGGCTCCATTCATTAAGAAGTTGAGCATGTGGTTTCCC-CAAAGAGTTTTA-CCC-AAGAAGACAAAGTACTTTATGAATAAG-TTCTATGGTTTCTCTCTTTGTTACA-TTTTTTGTGTG--GCATAGCACCCAATGGGCTCGGTCGTTTAA-ACCTGACATTGGGGCTAATAAATGGCCTACAAATAATTTCATTAACACAGTTAAAACTTTTTAGAAGCAAATCTCCACAAGTTGTAAGAATTCCAAAGCAAACCCTAAATTAAGCATGGACTATTAATGAGTTGTAACTTTATTTC----AGAAAAAGGGGCCGTTTTCATTGCTAGCCTTTGTTTACATTTCACACTTGGCTCCAGAGCTCAGTATGCTCAATGTTGGAGTTTCTCTCGTTTCAGAATGCCTTACTTTCATTCAAATTTCCAATGT-TA-----------------TTATAAGtta-------------------------------------------------catgtc----------------------------------------------------------------------tgtatcaattcac---------------------------------agttttcaagacatttcagagacattaacgca--tttgactcttcctagaattc-agtggggt-aggaagggaggcattga--tgttttcatgtaacacacaaggaaaccaagactcaaagattaagtcacctgttcaaagtcTCTTTCCCGAGCAGACGTCCTTCCTGGATTCC-------CCC--CACACCCCGCATTAACCTCTCTGTATCCTGCTCGGTATCGTATTGTATCTTTGACC-----------------------Cctagcagtgtggcctcaggcgagtcactcaacctctctgggccgcagtg----tcctcatctgtcaagtaagag-catgaccacagtgttcctcatcaggctg-tgtgattcatca-------gcacataaggtgctcccagcagagccag-----caacacagcaagtgcttaataaatgtgg-cta-tttttACTGTTATCGCTGTCAATAATAGC-----AGCATGCTGCCGGCCAGGGCCAGCTCAGCCCCA-------CGGGGTGGGCACCCCTGGAGCCCCC-AAGCCCGAAAGGAGGGAGTGTGCGG--CGTGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14343013 1160 - 49578535 CAGTGCCCT-CTGTAGCCT---------------GGACTT--------------TGCGATTTTTTTTTATCAGTTTCTAGTGC--------ATTTACATCAG--AGTGTATAG-----TAACTAATAATCCACAGC-------AGAACCCAAGGACAGCAGCGCGAAT-GCTGCCATTTGCAGCCTCTGTTAATTTCCTCCAGGCTGCATCTGAGTGGAGGAGGTGGTGGCGTTCTCACCGGCTCCTATATTACACT------ACATAACACATGTTATAAGCACCATTCATTCAGAATTTTAGCATGTGGTTTCCC-CAAAGAGTTTTA-CCC-AAGAAGACAAAGTACTTTA--GATAAG-TTCTACGGTTTCTCTCTTTATCACATTTTTTTGTGTG--GCATGCCACCCAATGGGCTCAGGAATTGAA-ACCTGACATTGGCTCTAATAAATGGTCTATAAATAATTTAATTA--ACAGTTAAAACTTTTCAGAAGCAAACCTCCGCAAGGTGTAAGGATTCCAAAGCAACCCCTAAGTTAAGCAGGGACTATTAGTGAGTTTTAGATTTATACC----AGAGAAAGGAGGCGTCGTTATTGCTAGTCTTTGTTTAC--TTCACACTTGGCTCCAGAGCTCCCTATGCTCAGTGTTGGAGTTCCACTCGTTTCGGAATGCCTTCCTTTCATTCAAATTGCCAGTGC-TA-----------------TACTGAAtta-------------------------------------------------catgtc----------------------------------------------------------------------tgtagacatgggc---------------------------------agttttcaagacatttcacggacatgaaagca--tttgac----cctagatttc-agtggggt-aggaagggaggcattgc--tgttttcacataacacacaaggaatccgagactcaaagattaagtcccttgttcaaagtcCCTTTCCCGAGCAGACGTCCTTCCTGAATTCC-------TCC-----------TATT-ACGTCTCTGTATCCTGCTCCATATGGTATCATGTCATTGACCTCCCTCCATTTTATCCAGTatttcctagcaatgtggcctcaggcgaggcactcaacctctctgggcctcagtg----tcctcatctgtcaaatgggga-catgacca-------------------g-tgtgatccgtcaagttgacacacatgaggtgctcacggcagagccag-----gaacacagcaagtgctcaataaatgtgg-ctAGCTTTTACTGTTATCACTGTGAATATTAGT-----AGCATGCTGCTGGCCGGGGC--------------------------GAGCACCCCTGGAGCTCCCAAAGCCTGAAAGCGGGGAGTGTGTGC--AGTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178866073 1156 + 195471971 ---TGGCCT-GCTTTGCCTGCATTGTGGCATCAGGGACCC--------------TGTG--TCTTTCTGATAAACTTTAAGGACTTCCCAAGCTTTATGTAAAACCCTTCTTAGTATGTCAGTTAAGG--CTACAGCTGACCAGAGGACCAGAGGACCAGAGCACCAACAGTTAGCATCTGCAGC--CTGTTCGTTTTCTCTATGTTGTAT---ATTGTAGGGGCTATTGGGGTTGGCAT-GACGTGTGTCTTCCACCAACAGGCCCTAGCACATGT---AGGCACCATTCGTCTGGAAGCTCAACAT-CACTGTCCC-----GAGGTTTATCCT-AGGAAGATGAGGCCCTTTGTGGTTAAGATTTTGCAGTTTCTCT--TCATTTCA-ATTTTTATGT----CGTACCACCCAATGAGTTTGATAATCTAA-ACCTGACACCAGGGCTAATAAATGGCCTACAGATAATTTAATTAACG-GGTTAAAACTTTTCCAAAGCTA--TCTGGGAAGTTGAAAGGATTCTAAAGCATGCCCTAAATTAAGCCTGGACTATTAATGAGTTTTAGATTTATTCCCGAAAAAAAAAAAAGCCATTTTTATTGCCAGTCTTT-TTTACACTTCTCACTTGGTTCCCAGGCTGAAGATGCTCAAAGCTGCATGGTCACAGACCTCAGAA-----------CATTCTGATTTGCTCCGTGTC-----------------TTGTGGTATA-------------------------------------------------AATCTC----------------------------------------------------------------------TATGTATATCTGT---------------------------------GGTTTTCAAGAACCTTCACCTACGTCAAGCCA---TGGACTCCCCTTTGAAATC-TTTTGGGT-AGAAAGAGACATTTTAAATTCTTTTCATACCCCAGACAAGGACACTATGACTCCACAAATAATCCTTGTTACCTTAGTTCCTGTCCTAAGCAGATATCTTCCCCCGAGCCCACCACTTCCC-----------CCTTAACTGCAGTGCATCCTGCTTCGTA---CACCATGTCTTTGACACAGCagtatttggtcaactatttcctaaaagtgtgtcattgcgtaagtcatataa-ctctctgggtctccatg----tccttatgtggcaaatT-----CATG---------TGCCTCATTAGACTA-T---------------------------------------------------TATGACAGCAAGTGTTCAACAGACCTTGTCTG-TCTGAAGTGTCATGATTTTTAAT-----------ATGATACCACTGG-TGTAGCCAGCTTAACCCCA-------CAGAGTCAGCACCCCTTAAGCCACA-AGGCACAAAACAGGCAAATGTGCAG--TGTGG i mm10.chr1 I 81 I 162 s canFam3.chr7 36446214 1370 + 80974532 TGGTGACTTAACTTTGCCT---------------GCATTTTGGCATCGGACAGCTGCA--TCTTCTGGATAAATTTCCAGCACTCCCCAAGATTTATACAAAACAGGGTGCAACAGGGTAACTCATG-CCTATAGC-------AGAACCTAAAGACCAGGGTGCTATTAGTT-------------CCTGTTAATTTCCTCCATGCTGTATCTGAGCCTGGGAAGTGG---TGCTCGCTTGGTCTCTGATATTAGACCACAGACACATAGGACATACCATAGGCTCCACTCATTAGGA----------GTGGCTTCCCCCAAAGAGTTTTA-CCAGGAAAAGACAAAATAC-----AAGTAAA-TCCAATCTTTTCTCTCTTTATTACA-TTTTTTGTGTGTATTGTACCACCCCTTGAGCTTGCTAATCTAGTAGATGACGTTGCATCAAACAAATGACCTACAAATAATTTAATTAACACAGTT-AAACTTGTCTAAAGCAATTCTCCCTAAGTTGTAAGCATTCCAAAGCAAACCCTAAATTCAGTGTGGACCATTAGTGAGTTTTAGATTTATTCC----ATAAAAAGAA-CTATTTTTATTGCTCCTGTTTGCTTATACTTCACACTTGTTTCCAGAGCCCC-TATGCTCTACGCTACAGTCACGCTTGCTTCGGAATGCTTTACTTTTGTTTAAATTGCCAGGAC-TAgggcagcccgggtggctcagcggtttagtgccgccttcagtccagggagtgttcctggagacccaggatcgggtcccatgtcaggctccctgcatggagcctgcttctctctgtatctctcatgaataaataaataaaatcttaaaaataaaTAAATAAAATTGCCAGGATTGTAATGCACTGCATTCCTCTATTAAAGGTTTTCCAGAAGttccatatacattagccca--ctcaactcttacttgaattctaatggtgtcaaagagggaagcactgt--tgtgttcacatcacacacaaggagacggaggctcagagaTT-AGTGTCTCATTCACAGGCCCTCTCCTGAGTGGACATCTCTCCTGGATTCT-------TCT-----------CCTTAAGCCCTCAG--TTCTGCTCGGTGTGGTACTGTGTCTTTGCGCTCCCGCTGTCT-ATCCACTGGTCACAAGCTTTGCCTcct-gggcccattattccacctctctgggcccctgtg----tcctcgtctgtcaactgaaga-cagaaccaaaatgtgcctcattgagctgctgggattcactgaggtgacacaCACGGGAGATACCTGGTAGAAAAAGAGGCAGAACATAGTAAGCTTTCA-----------CTG-TT----GTGTCATAATTGATGCTAGGAAG-----GTCATGCAGCTGGGAGGGTCATAGTCAGCCTCAGTGCCCCAGGGGTGAGCACACTGTAAGCCTCC-AAAGCAGGAA------AGTGGACAG--AGTAG i canFam3.chr7 C 0 C 0 a score=61095.000000 s hg38.chr1_KI270759v1_alt 299672 19 + 425601 GCCTGTGCTCTCCAGTCCT s panTro4.chr1 225056520 19 + 228333871 GCCTGTGCTCTCCAGTCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226425404 19 - 229942017 GCCTGTGCTCTCCAGTCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140308903 19 - 143122389 GCCTGTGCTCTCCAGTCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17020406 19 - 229590362 GCCTGTGCTCTCCAGTCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223784415 19 - 227556264 GCCTGTGCTCTCCAGTCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16834641 19 - 220367699 GCCTGTGCTCTCCAGTCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82634175 19 + 85787240 GCCTGTGCTCTCCAGTCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14344173 18 - 49578535 GCCTCTGCTCT-GAGCCCC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36447584 19 + 80974532 GCCTCTGCTTGCTGCTCCA i canFam3.chr7 C 0 C 0 e mm10.chr1 178867229 162 + 195471971 I a score=692482.000000 s hg38.chr1_KI270759v1_alt 299691 200 + 425601 CATTTTCAG-------CCTGTGAAGCCGCAGCC---ACTGTGGTGA-CCCGGGCAGTTAGAAATTGTGCTTTCTCTTCGTTTCTAAGGAAATCAGCTTCCTGAAGCTAAACAGTGATTAGAACAGTCCTGTTTCATGGTTGCCTTTGAGAG----CCATATGACCCTTCAGTGGCTTCGGCAGTCGCTGGCTGCCC-CTGTTGGGACACGTCTCTG s panTro4.chr1 225056539 200 + 228333871 CATTTTCAG-------CCTGTGAAGCCGCAGCC---ACCATGGTGA-CCCGGGCAGTTAGAAATTGTGCTTTCTCTTCGTTTCTAAGGAAATCAGCTTCCTGAAGCTAAACAGTGATTAGAACAGTCCTGTTTCATGGTTGCCTTTGAGAG----CCATATGACCCTTCAGTGGCTTCGGCAGTCGCTGGCTGCCC-CTGTTGGGACACGTCTCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226425423 204 - 229942017 GATTTGCAG-------CCTGGGAAGCCGCAGCC---GCCATGGTGA-CCCGGGCAGTTAGAAATTGTGCTTTCTCTTAGTTTCTAAGGAAATCAGCTTCCTGAAGCTAAGCAATGATGAGAACAGTCCTGGTTCCTGGTTGCCTTTGAGAACCATCCATACGACCCTTCGGTGGCTTCGGCAGTCGCTGGCTGCCC-CTGTTGGGACATGTCTCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140308922 204 - 143122389 GATTTTCAG-------CCTGTGAAGCCGCGGCC---GCCATGGTGA-CCCAGGCAGTTAGAAATTGTGCTTTCTCTTCGTTTCTAAGGAAATCAGCTTCCCGAAGCTAAGCAATGATTAGAACAGTCCCAGTTCCTGGTTGCCTTTGAGAGCCAGCCATATGACCCTTCAGTGGCTTCGGCAGTCGCCGGCTGCCC-CTGTTGGGACACGTCTCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17020425 204 - 229590362 GATTTTCAG-------CCTGTGAAGCTGCAGCC---GCCATAGTGA-CCCAGGCAGTTGGAAATCGTGCTTTCTCTTGGTTTCTAAGGAAATCAGCTTCCTGAAGCTAAGCAATGATTAGAACAGTCCCGGTTCCTGGTTGCCTTCGAGAGCCCTCCATATGGCCCTTCAGTGGCTTCGGCAGTCGCTGGCTGCCC-TTGTTGGGACACGCCTCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223784434 204 - 227556264 GATTTTCAG-------CCTGTGAAGCTGCAGCC---GCCATAGTGA-CCCAGGCAGTTGGAAATCGTGCTTTCTCTTGGTTTCTAAGGAAATCAGCTTCCTGAAGCTAAGCAATGATTAGAACAGTCCCGGTTCCTGGTTGCCTTCGAGAGCCCTCCATATGGCCCTTCAGTGGCTTCGGCAGTCGCTGGCTGCCC-TTGTTGGGACACGCCTCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16834660 204 - 220367699 GATTTTCAG-------CCTGTGAAGCTGCAGCC---GCCATGGTGA-CCCAGGCAGTTAGAAATCGTGCTTTCTCTTGGTTTCTAAGGAAATCAGCTTCCTGAAGCTAAGCAATGATTAGAACAGTCCTGCTTCCTGGTTGCCTTCGAGAGCCATCCATATGGCCCTTCAGTGGCTTCGGCAGTCGCTGGCTGCCC-TTGTTGGGACACGCCTCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82634194 204 + 85787240 GATTTTCAG-------CCTGTGGAGCTGTAGCC---GCCATGGTGA-CCCAGGCGATTAGAAATCGTGCTTTCTCTTGGTTTCTAAGGAAATCAGCTTCCTGAAGCTAAGCAATGATTAGAACAGTCCTGGTTCCTGGTTGCCTTCGAGAGCCATCCATATGGCCCTTCAGTGGCTTCGGCAGTCGCTGGCTGCCC-TTGTTGGGACACGCCTCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14344191 196 - 49578535 GAGTTTCAG-------CCTGTGAAGCCACAGCCACAGCCGTGGTGA--CCAGGCAGTTACAAATTGTGCTTTCTCCTGGCCTCTAAGGAAATC----------AGCTAAGCAATGATCGGAACAGTCCTGGTTGCTAGCTGCCTTTGGCAGACATCCATATTACCCTTCAGTGGCCTCAGCAGTCACTGGCTGCCC-CTGCTGGGACACACGTCTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178867391 208 + 195471971 CACTCTCAGGCCCTTACCTGTGTGGCAGCTGTC---ACTATGGTGGCCCCAGGAATCTGTGAATT---CTTTCTTCCTGCTTCTAAGAACATCATCTCCCTGGCACTGAGTAACAATAAGAATGGCCCTA-TTCCTTCTTTCCCTTAAGAGCTATCCCTGTTACCCTGAAGTAGCCTTGGCAG-CTTTGACCACCCACTGTTGGGAGAAACGTTTG i mm10.chr1 I 162 C 0 s canFam3.chr7 36447603 204 + 80974532 -CATCATGG-------CCTGTGAAGCAGCAGCT---ACCAGGAAGGCCCCAGGTGGTGAGGAGCTTGGCTTTCCATCAGTCTGTTGGGACATCAGCTTACTGACGCAAAGAAATGACCAGAACAGTCCTTGCTCCTCGTTGCCCTCTTGAGCTCCACTTAGGACCCTCGAGAGGCCTTGGCAGTCATTAGCTGCCT-ACTCTGGGGCAGACCTCTG i canFam3.chr7 C 0 I 232 a score=164132.000000 s hg38.chr1_KI270759v1_alt 299891 62 + 425601 CTGGGACACACCCCTGCT-------------GGAGAACCTGGACTTGTGGGCAGGCAGAGCCTTCCTGCAGACCT s panTro4.chr1 225056739 62 + 228333871 CTGGGACACACCCCTGCT-------------GGAGAACCTGGACTTGTGGGCAGGCAGAGCCTTCCTGCAGACCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226425627 62 - 229942017 CTGGGACACACCCCTGCT-------------GGAGAACCTGGACTTGTGGACAGGCAGAGGCTTCCTGCAGACCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140309126 62 - 143122389 CTGGGCCACACCCCTGCT-------------GGAGAACCTGGACTTGTGGGCAGGCAGAGCCTTCCTGCAGACCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17020629 62 - 229590362 TGGGGACACAGCTCTGCC-------------GGAGAACCCGGACTTGTGGGCAGGCGGAGGCTTCCTGCAGACCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223784638 62 - 227556264 TGGGGACACAGCTCTGCC-------------GGAGAACCCGGACTTGTGGGCAGGCGGAGGCTTCCTGCAGACCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16834864 62 - 220367699 TGGCGACACAGCTCTGCC-------------GGAGAACCTGGACTTGTGGGCAGGCGGAGGCTTCCTGCAGACCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82634398 62 + 85787240 TGGGTACACAGCTCTGCT-------------GGAGAACCCGGGCTTGTGGGCAGGCAGAGGCTTCCTGCAGACCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14344387 50 - 49578535 CTGAGAT-------------------------GAGAACCCGGACTTGTGGGCAAGCAGAAGCTTCCTGCAGACCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178867599 68 + 195471971 CTAGATC------TTGCTTAGGTGTAGATGGAGAGGACTGAGACCTGTGGCTGAGCAAAACCTT-GGGCAGAGCT i mm10.chr1 C 0 C 0 e canFam3.chr7 36447807 232 + 80974532 I a score=140869.000000 s hg38.chr1_KI270759v1_alt 299953 48 + 425601 GGCCCTTCCCATGGGGG------CTGTGCTCGAGAAGGCTGCA---------------TGCCTCTCCAG s panTro4.chr1 225056801 48 + 228333871 GGCCCTTCCCATGGGGG------CTGTGCTCGAGAAGACTGCA---------------TGCCTCTCCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226425689 48 - 229942017 GGCCCTGCGCATTGGGG------CTGTGCTCGAGAAGGCTGCA---------------TGCCTCTCCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140309188 48 - 143122389 GTCCCTGCCCACGGGGG------CTGTGCTCGAGAAGGCTGCA---------------TGCCTCTCCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17020691 47 - 229590362 GGCCCTGCCCAC-GGGT------CTGTGCTCAGGAAGGCCGCA---------------TGCCTCTCCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223784700 47 - 227556264 GGCCCTGCCCAC-GGGT------CTGTGCTCAGGAAGGCCGCA---------------TGCCTCTCCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16834926 47 - 220367699 GGCCCTGCCCAC-GGGT------CTGTGCTCGGGAAGGCCGCA---------------TGCCTCTCCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82634460 47 + 85787240 GGCCCTGCCCAC-GGGG------CTGTGCTCGGGAAGGCCGCA---------------TGCCTCTCCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14344437 47 - 49578535 GGCCCTGCCCAT-GGGG------CTATGCTCGGGAAGGCTGCG---------------TGCCTCTCCAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178867667 38 + 195471971 GTCCCTG----------------CTGTGGTCAGGGAGGCTTCC---------------TGCTGCGCTGG i mm10.chr1 C 0 C 0 s canFam3.chr7 36448039 69 + 80974532 ggcctctctcctaagggtgctaaccccactcaggagggccccaccctcatgacctagtcacctccccag i canFam3.chr7 I 232 I 147 a score=3111095.000000 s hg38.chr1_KI270759v1_alt 300001 999 + 425601 -GTCCCAGGGGAAG--CAGCAAGGGGCCTCCGGGGCCCC----------------------------------------------------------------------------------TGCCAGCTCTTAACA---CACACCAGATGGACAGCCCGCTGACCACGCTCTTCTCAGTGGAGAGCCGGGTGGGAACTGTGCC-AGGG-------GATGCCG---CCCCAACTCTGCACAGC-------AGGTCTCCTCTCGCCCCCGGCCTCTGCACGGGTGAC-------TCAGTG---------TGGTCCACACACAGCCAACATTCTCCCAGGTGGCTCAAGAATCAAATACAGCTTATTTTATGTATAGCTCAAGGTGATTTCTCAGCCTCCTGCCTCCCATCCCACTTTATGTCCAAAGAAGGCTTAGTCCATTGGGCAGC--CTTCTGCCTGCTCTGCA-GACACGCCTCTGGCAAATTCCATCAAGACGCTACTGCTTCTGTCTCAGGG-TTAGCAC----TGGGCTCTCCTTG-------CCTAAGTCCTGG-GGGGTTTGAAAGATCCTGTGTGCCCTACAGCAGCCCTGTCCTGCCACCCCCTCTGGCCCAGGAGGAGCCCCCCGCCCCCCGCAGAGTTGCTGGG--GACCACCCTGGAACAAGTGACAGCTGTTGGAAGTGTGGTTTTTCAA-TTTTAGTTTAGGAGA-GAAAACTGATTTCCAAATACTTGGGTTCACTGTGCT---------------------------------------------------------------------------------------GCTGAATAACAACATTCACGGCC-------------CAGG---------------TGCCCACCGGGAGGCACGCTGCCCCGAGGGCTGCAAAGCCCCATGTTAGCAC----TGCCTCCCGGAGCTCCCACGAGCCCTGACTCCGGCCCCGAGACAGAAATGA-----AAGCAACAGGGCACAGCGAATAATGCTATCTTTCTGCTTCTGTGACAAGTCTCAGGTGCTAAACAAAGAGAAGGACATTTCCCAGATCTC---------CAAGTTAGTCCACAAAACCGAC-----AGCTCTGATGGCTCGCAGAGCTCTGTATTAGCGGGTGTTCA-GGGGAAATACAAA-ACATCATCGAGAGCCTGGTCCCTGTCT-AGGATT-TA-ATAATCAAATTGGAGACCAG--ACACACACACCCGGCCAAAGAACACC--TAATAAC s panTro4.chr1 225056849 999 + 228333871 -GTCCCAGGGGAAG--CAGCAAGGGGCCTCCGGGGCCCC----------------------------------------------------------------------------------TGCCAGCTCTTAACA---CACACCAGATGGACAGCCCGCTGACCACGCTCTTCTCAGTGGAGAGCCGGGTGGGAACTGTGCC-AGGG-------GATGCCG---CCCCAACTCTGCACAGC-------AGGTCTCCTCTCGCCCCCGGCCTCTGCACGGGTGAC-------TCAGTG---------TGGTCCACACACAGCCAACATTCTCCCAGGTGGCTCAAGAATCAAATACAGCTTATTTTATGTATAGCTCAAGGTGATTTCTCAGCCTCCTGCCTCCCATCCCACTTTATGTCCAAAGAAGGCTTAGTCCATTGGGCAGC--CTTCTGCCTGCTCTGCA-GACACGCCTCTGGCAAATTCCATCAAGACGCTACTGCTTCTGTCTCAGGG-TTAGCAC----TGGGCTCTCCTTG-------CCTAAGTCCTGG-GGGGTTTGAAAGATCCTGTGTGCCCCACAGCAGCCCTGTCCTGCCACCCCCTCTGGCCCAGGAGGAGCCCCCCGCCCCCCGCAGAGTTGCTGGG--GACCACCCTGGAACAAGTGACAGCTGTTGGAAGTGTGGTTTTTCAA-TTTTAGTTTAGGAGA-GAAAACTGATTTCCAAATACTTGGGTTCACTGTGCT---------------------------------------------------------------------------------------GCTGAATAACAACATTCACGGCC-------------CGGG---------------TGCCCACCGGGAGGCACGCTGCCCCGAGGGCTGCAAAGCCCCATGTCAGCAC----TGCCTCCCGGAGCTCGCACGAGCCCTGACTCTGGCCCCGAGACAGAAATGA-----AAGCAACAGGGCACAGCGAATAATGCTATCTTTCTGCTTCTGTGACAAGTCTCAGGTGCTAAACAAAGAGAAGGACATTTCCCAGATCTC---------CAAGTTAGTCCACAAAACCGAC-----AGCTCTGATGGCTCGCAGAGCTCTGTATTAGCGGGTGTTCA-GGGGAAATACAAA-ACATCATCGAGAGCCTGGTCCCTGTCT-AGGATT-TA-ATAATCAAATTGGAGACCAG--ACACACACACCCGGCCAAAGAACACC--TAATAAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226425737 998 - 229942017 -GTCCCAGGGGAAG--CAGCAAGGGGCCTCCGGGGCCCC----------------------------------------------------------------------------------TGTCAGCTCTTAACA---CACACCAGATGGACAGCCCACTGACCACTCTCTTCTCAGTGGAGAGCCGGGCGGGAACTGTGCC-GGGG-------GATG-CA---CCCCAACTCTGCACAGC-------AGGTCTCCTCTCGCCCCTGGCCTCTGCACGGGTGAC-------TCAGTG---------TGGTCCACACACAGCCAACATTCTCCCAGGTGGCTCAAGAATCAAATACAGCTCATTTTATGTATAGCTCAAGGTGATTTCTCAGCCTCCTGCCTCCCATCCCACTTTATGTCTGAAGAAGGCTTAGTCCATTGGGCAGC--CTTCTGCCTGCTCTGCA-GACACGCCTCTGGCAAATTCCATCAAGACGCTACTGCTTCTGTCTCAGGG-TTAGCAC----TGGGCTCTCCTTG-------CCTAAGTCCTGG-GGGGTTTGAAAGATCCTATGTGCCCCACAGCAGCCCTGTCCTGCCACCCCCTTTGGCCCAGGAGGAGCCCCCTGTCCCCCGCAGAGTTGCTGGG--GACCACCCTGGAGCAAGTGACAGTTGTTGGACGTGTGGTTTTTCAA-TTTTAGTTTAGGAGA-GAAAACTGATTTCCAAATACTTGGGTTCACTGTGCT---------------------------------------------------------------------------------------GCTGAATAACAACATTCATGGCC-------------CAGG---------------TGCCCACCGGGAGGCACGCTGCCCCGAGGACTGCAAAGCCCCATGTTAGCAC----TGCCTCCCAGAGCTCCCACGAGCCCTGACTCCAGCCTCAAGACAGAAATGA-----AAGCAACAGGGCACAGCGAATAATGCCGTCTTCCTGCTTCTGTGGAAAGCCTCAGGTGCTAAAC--AGAGAAGGACGTTTCCCAGATCTC---------CAAGTTAGTCCACAAAACTGACTG---AGCTCTGATGGCTTGCAGAGCTCTATATTAGTGGGTGTTCA-GGGGAAATACAAA-ACATCATCGAGAGCCTGGTCCCTGTCT-AGGATT-TA-ATAATCAAATTGGAGACCAG--ACACACACACCAGGCCAAAGAACACC--TAATAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140309236 1013 - 143122389 -GTCCAAGGGGAAG--CAGCAAGGGGCCTCCAGGGCCCC----------------------------------------------------------------------------------TGCCAGCTCTTAACA---CACACCAGATGGACAGCCCACTGACCACTCTCTTCTCAGTGGAGAGCCGGGCGGGAACTGTGCCGGGGG-------GGTGCCG---CCCCAACTCTGCATAGC-------AGGTCTCCTCTCGCCCCCGGCCTCTGCACGGCTGAC-------TCAGTG---------TGGTCCACACACAGCCAACATCCTCCCAGGTGGTTCAAGAGTCAAAAGCAGCTTATTTTATGTATAGCTCAAGGTGATTTCTCAGCCTCCTGCCTCCCATCCCACTTTATGTCCAAAGAAGGCTTAGTCCATTGGGCAGC--CTTCTGCCTGCTCTGCA-GACACGCCTCTGGCAAATTCCATCAAGACGCTACTGCTTCTGTCTCAGGG-TTAGCAC----TGGGCTCTCCTTG-------CCTAAGTCCTGG-GGGGTTTGAAAGATCCTGTGTGTCCCACAGCAGCCCTGTCCTGCCACCCCCTTTGGCCCAGGAGGAGCCCCCTGCCCCCCGCAGAGTTGCTGGG--CACCACCCTGGAACAAGTGACAGTTGTTGGAAGTGTGGTTTTTCAA-TTTTAGTTTAGGAGA-GAAAACTGATTTCCAAATACTTGGGTTCATTGTGCTGCTGGAACTTACA--------------------------------------------------------------------------GCTGAATAACAACATTCATGGCC-------------CAGG---------------TGCCCACCGGGAGGCACGCTGCCCTGAGGACTGCAAAGCCCCATGTTAGCAC----TGCCTCCCGGAGCTCCCATGAGCCCTGACTCCAGCCTCGAGACAGAAGTGA-----AAGCAACAGGGCACAGCGAATAATGCTGTCTTCCTGCTTCTGTG--AAGTCTCAGGTGCTAACCAAAGAGAAGGACGTTTCCCAGACCTC---------CAAGTTAGTCCACAAAACTGACTG---AGCTCTGATGGCTTGCAGAGCTCTATATTAGTGGGTGTTCA-GGGGAAATACAAA-ACACCATCGAGAGCCTGGTTCCTGTCT-AGGATT-TA-ATAATCAAATTGGAGACCAG--ACACACACACCAGGCCAAAGAACACC--TAATAAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17020738 988 - 229590362 -GTCCACGGGGAAG--CAGCAAGGGGCCTCCGGGCCACC-----------------------------------------------------------------------------------GTCAGCTCTTAACA---CACACCAGATGGACAGCACACTGACCACGGTCTTCTCAGTGGAGAGCCGGGCGGGAACTGTGCC-GGGG-------GGTGATG-------------GCGCCGC-------AGCTGTCCTCTCACCCC-GGCCTCTGCACAGGTGAC-------TCAGCG---------TGGTCCACACACAGCCAACATTGTCCCAGGCGGCTCAGGAATCAAATACAGCTTATTTTATGTATAGCT-AAGATGATTTCTCAGCCTCCTGCCTCCCGTCCCACTTTATGTCCAAAGAAGGCTTAGTCCATTGGGCAGC--CTTCTGCCCGCTCTGCA-GACACGCCTCTGGCAAATTCCGTCAAGACGCTACTGCTTCTGTCTCAGGG-TTAGCAC----TGTGCTCTCCTTG-------CCTAAGTCCTGGAGGGGGTTGAAAGGTCCTGTGAGCCCCACAGCAGCCCTGTCCTGCCACCCCCTTTGGCCCAGGAGGAGCCCCCCGCCCCCCGCAGAGTTGCTGGG--GACCATCCGGGAACAAGTGACAGTTGTTGGAAGTGTGGTTTTTCAATTTTTAGTTTAGGAGA-GAAAACTGATTTCCAAATACTTGGGTTCATTGTGCTGCTGGAACTTACA--------------------------------------------------------------------------GCTGAATAACAACATTCACGGGC-------------CAGG---------------TGCCCACCGGGAGGCACACTG-CCGGAGGACTGCAAAGCCCCATGTTAGAAC----CGCCTCCCGGAGCTCCCACGAGCCCTGAATCCAGCCTCGAGACAGAAATGA-----AAGCAACAGGGCACAGCCAATAAT-----------GCTTCTGTGAAAAGTCTCAGGTGCTAACCAAAGAGAAGGAGGCTTCCCAGATTTC---------CAAGTTAGTCCACAAAACTGACTG---AGCTCTGATGGCTTGCAGAGCGCTATGTTAGTGGGTGTTCA-GGGGAAAT------ACATCATCGAGAGCCTCGTCCTTGTCT-AGGATT-TA-ATAATCAAATTGGAGACCAGACACACACACACCAGGCCAAAGAACACC--TAATAAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223784747 986 - 227556264 -GTCCACGGGGAAG--CAGCAAGGGGCCTCCGGGCCACC-----------------------------------------------------------------------------------GTCAGCTCTTAACA---CACACCAGATGGACAGCACACTGACCACGGTCTTCTCAGTGGAGAG-CGGGCGGGAACTGTGCC--GGG-------GGTGATG-------------GCGCCTC-------AGCTGTCCTCTCACCCC-GGCCTCTGCACAGGTGAC-------TCAGCG---------TGGTCCACACACAGCCAACATTGTCCCAGGCGGCTCAGGAATCAAATACAGCTTATTTTATGTACAGCT-GAGATGATTTCTCAGCCTCCTGCCTCCCGTCCCACTTTATGTCCAAAGAAGGCTTAGTCCATTGGGCAGC--CTTCTGCCCGCTCTGCA-GACACGCCTCTGGCAAATTCCGTCAAGACGCTACTGCTTCTGTCTCAGGG-TTAGCAC----TGTGCTCTCCTTG-------CCTAAGTCCTGGGGGGGGTTGAAAGGTCCTGTGAGCCCCACAGCAGCCCTGTCCTGCCACCCCCTTTGGCCCAGGAGGAGCCCCCCGCCCCCCGCAGAGTTGCTGGG--GACCATCCGGGAACAAGTGACAGTTGTTGGAAGTGTGGTTTTTCAATTTTTAGTTTAGGAGA-GAAAACTGATTTCCAAATACTTGGGTTCATTGTGCTGCTGGAACTTACA--------------------------------------------------------------------------GCTGAATAACAACATTCACGGGC-------------CAGG---------------TGCCCACCGGGAGGCACACTG-CCGGAGGACTGCAAAGCCCCATGTTAGAAC----CGCCTCCCGGAGCTCCCACGAGCCCTGAATCCAGCCTCGAGACAGAAATGA-----AAGCAACAGGGCACAGCCAATAAT-----------GCTTCTGTGAAAAGTCTCAGGTGCTAACCAAAGAGAAGGAGGCTTCCCAGATTTC---------CAAGTTAGTCCACAAAACTGACTG---AGCTCTGATGGCTTGCAGAGCGCTATGTTAGTGGGTGTTCA-GGGGAAAT------ACATCATCGAGAGCCTCGTCCTTGTCT-AGGATT-TA-ATAATCAAATTGGAGACCAGACACACACACACCAGGCCAAAGAACACC--TAATAAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16834973 995 - 220367699 -GTCCGCGGGGAAG--CAGCAAGGGGCCTCCGGGCCACC-----------------------------------------------------------------------------------GTCAGCTCTTAGCA---CACACCAGATGGACAGCACACTGACCAGTGTCTTCTCAGTGGAGAGCCGGGCGGGAACTGTGCC-GGGG-------GGTGATGCCTCCTCAGCTCTGTGCCGC-------AGCTCTCCTCTCACCCC-GGCCTCTGCACAGGTGAC-------TCAGTG---------TGGTCCACACACAGCCAACATTGTCCCAGGCGGCTCAGGAATCAAATACAGCTTATTTTATGTATAGCTCAAGATAatttctcagcctcctgcctcccgtcCCACTTTATGTCCAAAGAAGGCTTAGTCCATTGGGCAGC--CTTCTGCCCGCTCTGCA-GACACGCCTCTGGCAAATTCCGTCAAGACGCTACTGCTTCTGTCTCAGGG-TTAGCAC----TGCGCTCTCCTTG-------CCTAAGTCCTgg-gggggTTGAAAGGTCCTGTGAGCCCCACAGCAGCCCTGTCCTGCCA-CCCCTTTGGCCCAGGAGgagccccccgccccccgcagAGTTGCTGGG--GACCACCCGGGAACAAGTGACAGTTGTTGGAAGTgtggtttttcaatttttagtttagGAGA-GAAAACTGATTTCCAAATACTTGGGTTCATTGTGCTGCTGGAACTTACA--------------------------------------------------------------------------GCTGAATAACAACATTTACGGCC-------------CAGG---------------TGCCCACCGGGAGGCACGCTG-CCAGAGGACTGCAAAGCCTTATGTTAGAAC----TGCCTCCCGGAGCTCCCACGAGCCCTGAATCCAGCTTTGAGACAGAAATGA-----AAGCAACAGGGCACAGCCAATAAT-----------GCTTCTGTGAAAAGTCTCAGGTGCTAACCAAAGAGAAGGATGTTTCCCAGATTTC---------CAAGTTAGTCCACAAAACTGACTG---AGCTCTGATGGCTTGCAGAGCGCTATGTTAGTGGGTGTTTA-GGGGAAAT------ACATCATCGAGAGCCTCGTCCTt------taatt-ta-ataatcaaattggagaccagacacacacacaccaggccaAAGAACACC--TAATAAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82634507 1168 + 85787240 -GTCCACGGGGAAG--CAGCAAGGGGCCTCCGGGCCACCGTCAGCTCTTAACACACACCAGGTGGACAGCGCACTGACCACTCTCTTCTCGGTGGAGAGCCGGGCGGGGCCTCCGGGCCACTGTCAGCTCTTAACA---CACACCAGGTGGACAGCGCACTGACCACTCTCTTCTCGGTGGAGAGCCGGGCGGGAAC--TGCC-GGGG-------GGTGATGCCTCCTCAGCTCTGCGCCGC-------AGCTCTCCTCTCACCCC-GGCCTCTGCACAGGCGAC-------TCAGTG---------TGGTC--CACACAGCCAACATTGTCCCAGGCGGCTCAGGAATCAAATACAGCTTATTTTATGTATAGCT-AAGATGATTTCTCAGCCTCCTGCCTCCTGTCCCACTTTATGTCCAAAGAAGGCTCAGTCCATTGGGCAGC--CTTCTGCCCGCTCTGCA-GACATGCCTCTGGCAAATTCCGTCAAGACGCCACTGCTTCTGTCTCAGGG-TTAGCAC----TGCGCTCTCCTTG-------CCTAAGTCCTGGGGGGGTTTGAAAGGTCCTGTGAGCCCCACAGCAGCCCTGTCCTGCCACCCCCTTTGGCCCAGGAGGAGCCCCCCGCCCCCCGCAGAGTTGCTGGG--GACCACCCTGGAACAAGTGACAGTTGTTGGAAGTGTGGTTTTTCAATTTTTAGTTTAGGAGA-GAAAACTGATTTCCAAATACTTGGGTTCATTGTGCTGCTGGAACTTACAGCAGAAGAACAACATTCACGGCCCAGGTGCCCTCTTTCCAAATACTTGGGTTCATTGTGCTGCTGGAACTCACGGCAGAATAACGACATTCACGGCC-------------CAGG---------------TGCCCACCGGGAGGCACACTG-CTGGAGGACTGCAAAGCCCCATGTTAGAAC----CGCCTCCCAGAGCTCCCGCGAGCCCTGAATCCAGCCTTGAGACAGAAATGA-----AAGCAACAGGGCACAGCCAATAATACTGTCTTCCCACTTCTGTGAAAAGTCTCAGGTGCTAACC--AGAGAAAGATGTTTCCCAGATTTC---------CAAGGTAGTCCACAAAACTGACTG---AGCTCTGATGGCTTGCAGAGCGCTATGTTAGTGGGTGTTCA-GGGGAAATACAAA-ACATCATCGAGAGCCTCGTCCTTGTCT-AGGATT-TA-ATAATCAAATTGGAGACCAGACACACACACACCAGGCCAAAGAACACC--TAATAAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14344484 978 - 49578535 -CTCCAAGGGG-AG--CAGTGAGGGGCCTCCAGGGGCCA---------------------------------------------------------------------------------GTGTCAGCTCTTAACA---CACACCAGATGGACTGCCCACT-ACCAC--CCTTCTCAGTGGAGAGCCGAGGGGGAACTCT--C-AGGG-------GATGCCC---CCCTAACTCTGCACAGCA------AGGCCTCCTCTCGCCCC-AACCTCTGAACAGGTGAC-------CCCGTG---------TGGTCCACACACACCCAGCATTCTCCCAGGTGCCTCAAGAATCAAACACCGCTTATTGTAGGTATAGCTCAAGGTGATT--GCAGCCTCTAGCCTCCCATCTTGCTTTATCTCCAAAGAAGGCTTAGTTCATTGGGCAGC--CTTCTGCCTGCTCTGCA-G--ATGTCTCTTGCAAATTCCATCAAGATGCTACTACTTCTGTGTCAGGG-TTAGCAC----GGGGCTCTCCCTG-------CCTAGGTCCTG--GGGGTTTGAAAGATCCTGTGTTCCCCAGAGCAGCCCTGTTCTGCCACCCTCTTTGGCCCAGGAGGAGCCCCTTTGCCCCCACAGAGTGTCTGAG--GCCCACCCTGGAACAAGGGACAGTTATTGGAAGTGTGGTT-------TTTCAGTTTAGGAGA-GAAAACTGACTTCCAAATACTCGGGTTCATTGTGCTGCTGGAGCCCGCA--------------------------------------------------------------------------GCTGAATGACAGCATTCATAGCC-------------CAGG---------------TGCCCACTGGGACGCACGCTGCCCCAAGGACCACAAAGCCCTGTGTTAGCAC----TGCCTGGCGGAGCTTCCACCAGCTCTGACTCCAGCCCCCAGACAGAAGTGA-----AGGCAGCAGGGCGCAG-GAAGAATGCTGTCGTCCTGTGGCTGTGACAAGTCTCAGGTGCTAACCAAAGAGAAGGACATTTCCTAGATTTC---------CAAGTTAGTCCACAAAAC----------------------TGCAGAGCACTCTATTAATGGGTGTTCA-GGGGAAATACAAA-GTGTCCTCCAGGGCCTGGTCCCTGTCG-ATGATT-TA-ATAATCAAATTGGAGAGCAG--ACACACACCCCAGGCTGAAGAGCACC--TAACAGC i calJac3.chr19 C 0 I 194 s mm10.chr1 178867705 1022 + 195471971 -GCCCATGGGGAAGGACAGCAGGGAGTGTCCAGGGGTCA---------------------------------------------------------------------------------CTGTCAGCCCTTAGCAAACCACACTAGGCAAAT----CTCCAGTCATTCTCTTCTCCCTGAAGAG-----CAGAAGCCCTACA-GGGGAGTGTGTGGTGATC---CTCATACCCTGTGAGGCCACTCCTGTGTCTTCACTGCCCCTTGGTCTCTTTACTGGTGACACCAATGGCAGTT---------TGTTCTGCTTATAACCAAAATTCTCCTTGGTGTCTTAAGACTCTCTTA--ATTAACATCATGTGTGGCT-AGGGTGGCTG-GCAGTCTCCCGACCCCCACCTCATTTCAAGTTGAAGGTGGGCTTG------TGGGCAGTAACTTCTCCCTGCACTGGATGAGACAGTTCAGGCTAACTCCAGACAACCTCTACTGTTCTAGTCTCAGCT-TCAGAGCAACATTGGCTCTTGTCA-------CCTTAGACCTGG-AAGTTGTATAAGATCTCATGGTCCTCACA-TAGTCCTATCCCTCCATCCC--TTGGCTAAAGGGGA---------CCCCTGAAGAGCTGCTGAGGTGACTGCCCATGAACAATTGACTATTGTTGGGAGTGTGGTCTTTCAA-TTTCAGCTTGGAAGAGGGAAATCGACTTCCAAATACTTAGATCCATTGCACAGCTGCACCACGGA--------------------------------------------------------------------------GCTGAACGACTACATTCATGGCC-------------CAGGCTGCCTCCTTTCAGATTCCCACTGGGAGGCACACTGCTCCAATGGCTGCAGAGCCC-----TAGCATTTGATGGCTCTCAGGGCCTCTATGAGCTCTGACCCCAGCCCTGAGACAGAAGTGAAGGCGAAGCAAAAGGTCATGGAAAGTACTTCTGTCCTCCTGTTGCTGC-AGTGGCCTGAGATGCTAACTAGAGAG--------TTTCTGGATCTC---------TGAGGTGGTCCACACACTTGACTGCATAGCTT---TAGTTTGCAGCTTGCACTGTCACTGAGCATCAATGGAGAGATACAAAGAAGTCATCGAGAACCTGCTCTCGGTGTAAAGATTGTG-ATAATCACACCGAAGACAAG--A-AGGCATGCTTAGCTAAAGAA------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36448255 969 + 80974532 GGCCCAAGGCATAAGACAGCAGGAGGCCTCCAGGGGCCA---------------------------------------------------------------------------------CTGGCAACCCCTAACA----ATACGAGACAGACTGGTCACTGCGCACTGTCTTCTTGGTGGATGG-TGGGCAGGAATTCTGCT-AAGA-------GAGGC-----CTGGGAGTCTGC------------TCCTGTTCTCTGTCCTTGGGCCTTGGCACAAATAAT-------TCAATGATGGTAGTTTGGTACACACACAACCAGCTTTCTCCCTGCTG-CTCTGGAATCTAGTACAGTCTATTTCAGGCCGGGCT-----------CTCAGCCCCCTAAGCCCCACCGCACTTTATGTCCAAAGAAGGCTGA-------------------------GCTCTGCA-GAGTCACCTGTGGCCAATTCTGTCAAGATTCT-CAGCCTCCACTGCAGGGCTTCGGGC----TGGCTTCTCACTGCGGAGCTCCTGGGTCCTGG-GGGGTGTGACAGATCCTGTGGTCCCTGCAGCGGCCTCATCCTGCCACCCTC-TCAGCCCAGGAGGAG--------CCCCCGTAGAGTTGCTGAGGTGACCACC--AGAAGGATCAACAACGGGTGGAACTGTGGTTTTTCAA-TTTTGGTTTGGGAGA-GAAAATCAATTTCCAAATACCCAGGTCTGTTGCACTCTGATAGCCTGGA--------------------------------------------------------------------------GCT--------ACATTCCAGGCCAGGCCATGGCTCTCAGA---------------TTCCCA--GGGAGGC-CGGGGCCCTATGGGCTTCAGAGCCC-AGGTGTTTCT----TGCTTCTGAGTGATTCCTGGAGGTCTGACTCTGG--------CAAAGGTGG-----AA---------CACAGTGCAGGATTTTGTCCTCCTGCTGCTCTGA-AAGCCTCATATGCTACCCAGAGAGAG------TTCTCAGATCTCTCTTTTATGCCAGCGAGGCCACAAAATTTACTG---AATCCTTATTGTTTGTGG-GTGCTTTATTATTGGGTGTTTATGGGGAAATACAGA-AAGTCAGCAGCAGCCTGGCCCCTGTCTAAGGATT-CAGATGGTCATGAGGGAGCTGAG----CCATGCAGCCGCCTGGAGAACACCCGTTGTAAC i canFam3.chr7 I 147 C 0 a score=64158.000000 s hg38.chr1_KI270759v1_alt 301000 29 + 425601 ATAC---CATGTGGTGACTGATACTCTATATG s panTro4.chr1 225057848 29 + 228333871 ATAC---CATGTGGTGACTGATACTCTGTATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226426735 29 - 229942017 ATAC---CACGTGGTGACTGATATTCTATATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140310249 29 - 143122389 ATAC---CACGTGGTGACCAATATTCTGTATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17021726 29 - 229590362 ATAC---CATGTGGTGACTGATATTCTATATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223785733 29 - 227556264 ATAC---CATGTGGTGACTGATATTCTATATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16835968 29 - 220367699 ATAC---CATGTGGTGACTGATATTCTATATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82635675 29 + 85787240 ATAC---CATGTGGTGACTGATATTCTATATG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178868727 11 + 195471971 ---------------------TACCCTAAATG i mm10.chr1 C 0 I 29 s canFam3.chr7 36449224 30 + 80974532 ATCCTTGCAAATGGCCTTTGATACTGTACG-- i canFam3.chr7 C 0 C 0 e calJac3.chr19 14345462 194 - 49578535 I a score=196330.000000 s hg38.chr1_KI270759v1_alt 301029 75 + 425601 TTGAATGTATCTGTAGCAAAAGGAAGAAAAGGCAGGTTTTGAAAAGAGGAGCATGggacgggcgcagtggctcac s panTro4.chr1 225057877 75 + 228333871 TTGAATGTATCTGTAGCAAAAGGAAGAAAAGGCAGGTTTTGAAAAGAGGAGCATGggccgggcgcagtggctcac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226426764 75 - 229942017 TTGAATGTATCTGTAGCAAAAGAAAGAAAAGGCAGGTTTTGAAAAGAGGAGGATTggctgggcgcagtggcttac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140310278 75 - 143122389 TTGAATGTATCTGTAGCAAAATAAAGAAAAGGCAGGTTTTGAAAAGAGGAGGATGggccaggcgcagtggctcac i nomLeu3.chr5 C 0 I 416 s rheMac3.chr1 17021755 75 - 229590362 TTGAATGTATCTGTAGCAAAAGAAAGAAAAGGCAGGTTTTGAAAAGAGGAGGATGggccgggcgcagtggctcat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223785762 75 - 227556264 TTGAATGTATCTGTAGCAAAAGAAAGAAAAGGCAGGTTTTGAAAAGAGGAGGATGggccgggcgcagtggctcat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16835997 75 - 220367699 TTGAATGTATCtgtagcaaaagaaagaaaaggcaggttTTGAAAAGAGGaggatgggccgggcgcagtggctcat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82635704 75 + 85787240 TTGAATGTATCTGTAGCAAAAGAAAGAAAAGGCAGGTTTTGAAAAGAGGAGGATGggccgggcgcagtggctcac i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36449254 50 + 80974532 TTGA----ATCTGCACAGAGAAAAAGACAAAGTTGGTTTTGAAAAGAAGGGGAT--------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178868738 29 + 195471971 I e calJac3.chr19 14345462 194 - 49578535 I a score=105840.000000 s hg38.chr1_KI270759v1_alt 301104 43 + 425601 gcctgtaatcccagcactttgggaggccgaggcgggtggatca s panTro4.chr1 225057952 43 + 228333871 gcctgtaatcccagcactttgggaggctgaggcgggtggatca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226426839 43 - 229942017 gcctgtaatcccagcactttgggaggccaaggcgggtggatca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140310769 43 - 143122389 gcctgtaatcccagcactttgggaggccgaggcaggtggatca i nomLeu3.chr5 I 416 C 0 s rheMac3.chr1 17021830 43 - 229590362 gcctgtaatcccagcactttgggaggccgaggcaggtgggtca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223785837 43 - 227556264 gcctgtaatcccagcactttgggaggccgaggcaggtgggtca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16836072 43 - 220367699 gcctgtaatcccagcactttgggaggccgaggcaggtgggtca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82635779 43 + 85787240 acctgtaatcccagcactttgggaggccgaggcaggtgggtca i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36449304 8 + 80974532 -----------------------------------ATGGATCA i canFam3.chr7 C 0 C 0 e mm10.chr1 178868738 29 + 195471971 I e calJac3.chr19 14345462 194 - 49578535 I a score=162794.000000 s hg38.chr1_KI270759v1_alt 301147 67 + 425601 cctgaggtcaggagtttgagaccagcctgaccaacgtggtgaaaccccctctctact--aaaaaaatgc s panTro4.chr1 225057995 67 + 228333871 cctgaggtcaggagtttgagaccagcctgaccaacatggtgaaactccctctctact--aaaaaaatgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226426882 66 - 229942017 cctgaggtcaggagttcgagaccagcctgaccaacatggtgaaatcccctctctact--aaaaaaatg- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140310812 69 - 143122389 cctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccccctctctactaaaaaaaaatgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17021873 67 - 229590362 cctgaggtcaggagtttgagaccagcctgaccaacttggtgaaaccccctctctact--aaaaaaatgc i rheMac3.chr1 C 0 I 144 s macFas5.chr1 223785880 67 - 227556264 cctgaggtcaggagtttgagaccagcctgaccaacttggtgaaaccccctctctact--aaaaaaatga i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16836115 67 - 220367699 cctgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccctctctact--aaaaaaatgc i papAnu2.chr1 C 0 I 2 s chlSab2.chr25 82635822 67 + 85787240 cctgaggtcaggagtttgagaccagcgtgaccaacatggtgaaaccccctctctact--aaaaaaatgc i chlSab2.chr25 C 0 I 1 e mm10.chr1 178868738 29 + 195471971 I e canFam3.chr7 36449312 0 + 80974532 C e calJac3.chr19 14345462 194 - 49578535 I a score=159029.000000 s hg38.chr1_KI270759v1_alt 301214 64 + 425601 aaaaaattagccaggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaag s panTro4.chr1 225058062 64 + 228333871 aaaaaattagccaggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226426948 64 - 229942017 aaaaaattagccaggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcaag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140310881 64 - 143122389 aaaaaattagccaggcatggtggcacatgcctgtaatcccagctgctcgggaggctgaggcaag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17022084 64 - 229590362 aaaaaattagccgggcatgctggcgcacgcctgtaatcccagctactcgggaggctgaggcagg i rheMac3.chr1 I 144 C 0 s macFas5.chr1 223785948 64 - 227556264 aaaaaattagccgggcatgctggcgcacgcctgtaatcccagctactcgggaggctgaggcaag i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16836184 64 - 220367699 aaaaaattagccgggcatgctggcgcacgcctgtaatcccagctactcgggaggctgaggcaag i papAnu2.chr1 I 2 C 0 s chlSab2.chr25 82635890 64 + 85787240 aaaaaattagctggacatggtggcgcacgcctgtaatcccagctactcgggaggctgaggcaag i chlSab2.chr25 I 1 C 0 e mm10.chr1 178868738 29 + 195471971 I e canFam3.chr7 36449312 0 + 80974532 C e calJac3.chr19 14345462 194 - 49578535 I a score=56421.000000 s hg38.chr1_KI270759v1_alt 301278 27 + 425601 agaatcacttgagcccaggaggcggag s panTro4.chr1 225058126 27 + 228333871 agaatcacttgagcccaggaggcggcg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226427012 27 - 229942017 agaatcgcttgagcccaggaggcggag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140310945 27 - 143122389 agaatcgcttaagcccaggaggcagag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17022148 27 - 229590362 agaattgcttaaacctgggcggcagag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223786012 27 - 227556264 agaatcgcttgagcctgggcggcagag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16836248 27 - 220367699 agaatcgcttgagcctgggcggcagag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82635954 27 + 85787240 agaatcacttgagcctgggcggcagag i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36449312 15 + 80974532 AGAA------------AGAAGAAGGAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178868738 29 + 195471971 I e calJac3.chr19 14345462 194 - 49578535 I a score=10764.000000 s hg38.chr1_KI270759v1_alt 301305 3 + 425601 gtt s panTro4.chr1 225058153 3 + 228333871 gtt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226427039 3 - 229942017 gtt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140310972 3 - 143122389 gtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17022175 3 - 229590362 gtt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223786039 3 - 227556264 gtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16836275 3 - 220367699 gtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82635981 3 + 85787240 gtt i chlSab2.chr25 C 0 C 0 s mm10.chr1 178868767 3 + 195471971 TTT i mm10.chr1 I 29 C 0 s canFam3.chr7 36449327 3 + 80974532 GTT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14345462 194 - 49578535 I a score=250452.000000 s hg38.chr1_KI270759v1_alt 301308 123 + 425601 gcagtgagttgagatcgcaccattgcactccagcctgggcaacgagactgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaTGAGGAAGGTGTGAATTGAAAATGAGGAAAGAGATCAG s panTro4.chr1 225058156 118 + 228333871 gcagtgagttgagatcgtgccattgcactccagcctgggcaacgagactgaaactccgtctcaaaaaaaaaaaaaaaaaa-----TGAGGAAGGTGTGAATTGAAAATGAGGAAAGAGATCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226427042 119 - 229942017 gcagtgagtcgagatcgtgccgttgcactccagcctgggcaacaagactgaaactctgtctcaaaaaaaaaaaaaaaaaa----aTGAGGAAGGTGTGAATTGAAAATGAAGAAAGAGATCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140310975 117 - 143122389 gcagtgcgttgagatcacgccattgcactccagcctgggcaacgagactgaaactccgtccaaaaaaaaagaaaaaaaaa------GAGGAAGGTGTGAATTGAAAACGAGGAAAGAGATCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17022178 117 - 229590362 gcagtgagtcgagatcacaccattgcactccagcctgggcagcaagagtgaaactccgtctcaaaaataaagaaagaaaa------GAGGAAGGTGTGAATTGAAATCGAGGAAAGAGGTCGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223786042 117 - 227556264 gcagtgagtcgagatcacaccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaataaagaaagaaaa------GAGGAAGGTGTGAATTGAAATCGAGGAAAGAGGTTGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16836278 117 - 220367699 gcagtgagtcgagatcacaccattgcactccagcctgggcaacaagagtgaaactccatctcaaaaataaagaaagaaaa------gaggaaggtgtgaattgaaatcaaggaaagaggtcgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82635984 117 + 85787240 gcagtgagtcgagatcgcgccattgcactccagcctgggcaatgagagtgaaactctgtctcaaaaataaagaaagaaaa------GAGGAAGGTGTGAACTGAAATCTAGGAAAGAGGTCGG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178868770 66 + 195471971 GCAGTGAGTG-------------------------TGTGTATAGAGAAAGAGG----GTTTCAAAAGTCAGATGTGAGCA------AAGAAAG--------------------AAGGGAT--G i mm10.chr1 C 0 C 0 e canFam3.chr7 36449330 0 + 80974532 C e calJac3.chr19 14345462 194 - 49578535 I a score=189496.000000 s hg38.chr1_KI270759v1_alt 301431 66 + 425601 GAGAGAAAGCAGATATATATCACAAACCTCTTGCTTACGTGAGAACTACGGTGTTTCTCAAGGTCT- s panTro4.chr1 225058274 66 + 228333871 GAGAGAAAGCAGATATATATCACAAACCTCTTGCTTACGTGAGAACTACGGTGTTTCTCAAGGTCT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226427161 66 - 229942017 GAGAGAAAGCACATATATATCACAAACCTCTTGCTTATGTGAGAACTACGGTGTTTCTCAAGGTCT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140311092 66 - 143122389 GAGAGAAAGCAGATATATATCACAAACCTCTTGCTTACATGAGAACTACGGTGTTTCTCAAGGTCT- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17022295 66 - 229590362 GAGAGAAAGCAGATATATATCACAAACCTCTTGCCTATGTGAGGACTACCACGTCTCTCAAGGTCT- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223786159 66 - 227556264 GAGAGAAAGCAGATATATATCACAAACCTCTTGCCTATGTGAGGACTACCACATCTCTCAAGGTCT- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16836395 66 - 220367699 gagagaaagCAGATATATATCACAAACCTCTTGCCTATGTGAGGACTACCACATCTCTCAAGGTCT- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82636101 66 + 85787240 GAGAGAAAGCAGATATATATCACAAACCTCTTGCCTGTGTGAGGACTACCACGTCTCTCAAGGTCT- i chlSab2.chr25 C 0 C 0 s mm10.chr1 178868836 66 + 195471971 GGAAGAAAGAAGAGGCACATCTAGACATTCTTGATTCTGTTAGTACTAAGATCGTCCTCAGGGTTT- i mm10.chr1 C 0 C 0 s canFam3.chr7 36449330 65 + 80974532 GGGAGAAAGTAGATGTGCATCACAGGGCTCCTGCTTCTATTAGAAATA--GTGTTTCCCAAGGTCAT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14345462 194 - 49578535 I a score=2062606.000000 s hg38.chr1_KI270759v1_alt 301497 621 + 425601 CACTTGTGAAATGGTGGGTCACCTTTTT-CCCTCTCATAAGCCTGGCCTGTTTAATAAAC--------------------------------TCTATGTATACGTGT------------------------------------GTCAG-----------CAGAGGGTGAGTGGAGAGTTTAAAGACCTTATCCGGGACCCCAGAATGGCAGATGAGGGAAGGGAATGAGGTTCATGAGCACACTGTGC-CCCCATTCCAGCCTGCTCCTGCCTGCTCTACAGACGCATTCGCTGAAACGTACCACGGATTAGCAGAAGGGTGGTTTGCAGTGCATGTGC-ATAATGCTCAGGCTTGCAAAGGGCGGAAGGTCGCCAGGGGTTCTGAGCATCTCCAAAACTTCACGACAGAGGCCAACCCACCTGGGAACACAGTGACACTGGGACCCGAAGCCCCAGGAAGGTGGGCTCA----------------------------------------------------------CTTTCGT-TGTTAGTGGTGTCTC---CGCTGCGAGGTCCATTCACGGCTCGTGTCTCCTCTTGTGTCTGACAGGCTGAAGTGTGTGCAGGCACCGTGGCAGAGGTGATCCAGTCTGTGGTCAACGGGGCAGATGGCTGCGTGTTCTGTTTCGGCCACGCCAAACTGGGTTCGTGAGAGTTTCACTT---TCTCATGCGGCTCGTTGAGCTCCCTGTCATCCCATGCATTCCTCTGTCTCC s panTro4.chr1 225058340 621 + 228333871 CACTTGTGAAATGGTGGGTCACCTTTTT-CCCTCTCATAAGCCTGGCCTGTTTAATAAAC--------------------------------TCTATGTAAACGTGT------------------------------------TTCAG-----------CAGAGGGTGAGTGGAGAGTTTAAAGGCCTTATCCGGGAGCCCAGAATGGCAGATGAGGGAAGGGAATGAGGTTCATGAGCACACTGTGC-CCCCATTCCAGCCTGCTCCTGCCTGCTCTACAGACGCATTCGCTGAAACATACCACGGATTAGCAGAAGGGTGGTTTGCAGTTCACGTGC-ATAATGCTCAGGTTTGCAAAGGGCGGAAGGTCGCCAGGGGTTCTGAGCATCTCCAAAACTTCACGACAGAGGCCAACCCACCTGGGAACACAGTGACACTGGGACCCGAAGCCCCAGGAAGGTGGGCTCA----------------------------------------------------------CTTTCGT-TGTTAGTGGTGTCTC---TGCTGCGAGGTCCATTCACGGCTCGTGTCTCCTCTTGTGTCTGACAGGCTGAAGTGTGTGCAGGCACCGTGGCAGAGGTGATCCAGTCTGTGGTCAACGGGGCAGATGGCTGCGTGTTCTGTTTCGGCCACGCCAAACTGGGTTCGTGAGAGTTTCACTT---TCTCATGCGGCTCGTTGAGCTGCCTGTCATCCCATGCATTCCTCTGTCTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226427227 621 - 229942017 TACTTGTGAAATGGTGGGTCACCTTTTT-CCCTCTCATAAGCCTGGCCTGTTTCATAAAC--------------------------------TCTGTGTACACGTGT------------------------------------GTCAG-----------CAGAGGGTGAGCGGAGAGTTTAAAGGCCTTATCCGGGAGCCTAGAATGGCAGATGAGGGAAGGGAATGAGGTTCATGAGTACACTGTGC-CCCCATTCCAGCCTGCTTCTGCCTGCTGTACAGACGCATTCGCTGAAATGTACCACGGATTAGCAGGAGGGTGCTTTGCAGTTCACGTGC-ATAATGCTCAGGCTTGCAAAGGGCGGAAGGTCGCCAGGGCTTCTGAGCATCTCCAAAACTTCATGGCAGAGGCCAGCCCACCTGGGAACACAGTGACACTGGGACCCGAAGCCCAAGGAAGGTGGGCTCA----------------------------------------------------------CTTTCGT-TGTTAGTGGTGTCTC---CGCTGCGAGGTCCATTCACGGCTCGTGTCTCTTCTTGTGTCTGACAGGCTGAAGTGTGTGCAGGCACCGTGGCAGAGGTGATCCAGTCTGTGGTCAACGGGGCAGATGGCTGCGTGTTCTGTTTCGGCCACGCCAAGCTGGGTTCGTGAGAGTGTCACTT---TCTCATGCGGCTCCTTGGGCTCCCTGTCATCCCATGCATTCCTCTGTCTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140311158 678 - 143122389 CACTTGTGAAACGGTGGGTCACCTTTTT-CCCTCTAATAAGCCTGGCCTGTTTCATAAAC--------------------------------TCTATATATACGTGT------------------------------------GTCAG-----------CAGAGGGTGAGTGGAGAGTTTAAAGGCCTTATCCGGGAGCCCAGAATGGCAGATGAGGGAAGGGAATGAGGTCCATGAGGG-AATGTGC-CCCCATTCCAGCCTGCTCCTGCCTGCTCTACAGACGCATTCTCTGAAATGTACCACGGGTTAGCAGAAGGGTGGTTTGCAGTTCACGTGC-ATAGTGCTCTGGCTTGCAGAGGGCGGAAGGTCGCCAGGGGTTCTGAGCATCTCCAGAACTTCATGGCAGAGGCCAACCCACCTGGGAACACAGTGACACTGGGGCCCGAAGCCCCAGGAAGGCGGGCTTACTTCCTGAAACCCCAGGAAGGTGGGCTTACTTCCCGAAGCCCCAGGAAGGTGGGCTTCCTTTCGT-TGCTAGTGGTGCCTC---CACTGCGAGGTCCATTCACGGCTCGTGTCTCCTCTTGTGTCTGACAGGCTGAAGTGTGCGCAGGCACCGTGGCAGAGGTGATCCAGTCTGTGGTCAACGGGGCAGATGGATGCGTGTTCTGTTTCGGCCACGCCAAGCTGGGTTCGTGAGAGTTTCACTT---TCTCATGTGGCTCGTTGGGCTCCCTGTCATCCCACGCATTCCTCTATCTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17022361 613 - 229590362 GTCTTGTGAAATGGTGGGTCACCTTTTT--CCTATAAAAAGCCCGGCCTGTTTCATAAAC--------------------------------TCTGTGTATACATGT------------------------------------GTCAG-----------CAGAGGGTGAGTGGCGAGTTTAAAGGCCTTGTCTGGGAGCCCAGAGTGTCCGACGAGGGAAGGGAATGAGGTCCGTGAACACACTG----CCCCATTCCAGCCTGCTCCTGCCTGCGCTACAGACGCATTTGCTGAAATGCACCATGGATTAGCAGAAGGGTGGTTGGCAGTGGGCGTGCGGTAATGCTCAGGCTTGCAAAGGGCGGAAGGTTGCCAGGGGTTCTGAGCATCTCCAAAACTTCATGGCAGAGGCCAACCCACCTGGGAACACAG-----CTGACACCCGAAGCCCCAGGAAGGTGGGCTCA----------------------------------------------------------CTTTCGT-TGTTAGTGATTCCTC---CACTGCAAGGTTCATTCATGGCTTGTGTCTCCTCTTGTGTCTGACAGGCTGAAGTGTGTGCAGGCACCGTGGCAGAGGTGATCCAGTCTGTGGTCAACGGGGCGGATGGCTGCGTGTTCTGTTTCGGCCACGCCAAGCTGGGTTCGTGAGAGTTTCGCTT---TCTCATGCGGCTCGCTGGGCTCCCTGTCGTCCCATGCATTCCTCTGTCTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223786225 613 - 227556264 GTCTTGTGAAATGGTGGGTCACCTTTTT--CCTATAAAAAGCCCGGCCTGTTTCATAAAC--------------------------------TCTGTGTATACATGT------------------------------------GTCAG-----------CAGAGGGTGAGTGGCGAGTTTAAAGGCCTTGTCCGGGAGCCCAGAGTGTCCGACGAGGGAAGGGAATGAGGTCCGTGAACACACTG----CCCCATTCCAGCCTGCTCCTGCCTGCGCTACAGACGCATTTGCTGAAATGCACCATGGATTAGCAGAAGGGTGGTTGGCAGTGGACGTGCGGTAATGCTCAGGCTTGCAAAGGGCGGAAGGTTGCCAGGGGTTCTGAGCATCTCCAAAACTTCATGGCAGAGGCCAACCCACCTGGGAACACAG-----CTGACACCCGAAGCCCCAGGAAGGTGGGCTCA----------------------------------------------------------CTTTCGT-TGTTAGTGATTCCTC---CACTGCAAGGTTCATTCATGGCTTGTGTCTCCTCTTGTGTCTGACAGGCTGAAGTGTGTGCAGGCACCGTGGCAGAGGTGATCCAGTCTGTGGTCAACGGGGCGGATGGCTGCGTGTTCTGTTTCGGCCACGCCAAGCTGGGTTCGTGAGAGTTTCGCTT---TCTCATGCGGCTCGCTGGGCTCCCTGTCGTCCCATGCATTCCTCTGTCTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16836461 613 - 220367699 GTCTTGTGAAATGGTGGGTCACCTTTTT--CCTATAAAAAGCCCGGCCTGTTTCATAAAC--------------------------------tctgtgtatacatgt------------------------------------gtcaG-----------CAGAGGGTGAGTGGCGAGTTTAAAGGCCTTGTCCGGGAGCCCAGAGTGTCCGATGAGGGAAGGGAATGAGGTCCGTGAACACACTG----CCCCATTCCAGCCTGCTCCTGCCTACACTACAGACGCATTTGCTGAAATGCACCATGGATTAGCAGAAGGGTGGTTGGCAGTGGACGTGCGGTAATGCTCAGGCTTGCAAAGGGCGGAAGGTTGCCAGGGGTTCTGAGCATCTCCAAAACTTCATGGCAGAGGCCAACCCACCTGGGAACACAG-----CTGACACCCGAAGCCCCAGGAAGGTGGGTTCA----------------------------------------------------------CTTTCGT-TGTTAGTGATTCCTC---CACTGCAAGGTTCATTCATGGCTTGTGTCTCCTCTTGTGTCTGACAGGCTGAAGTGTGTGCAGGCACCGTGGCAGAGGTGATCCAGTCTGTGGTCAACGGGGCGGATGGCTGCGTGTTCTGTTTCGGCCACGCCAAGCTGGGTTCGTGAGAGTTTCGCTT---TCTCATGCGGCTCGCTGGGCTCCCTGTCGTCCCATGCattcctctgtctcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82636167 614 + 85787240 GTCTTGTGAAATGGGGGGTCACCTTTTT--CCTGTAAAAAGCCCGGCCTGTTTCATAAAC--------------------------------TCTGTGTATACATGT------------------------------------GTCAG-----------CAGAGGGTGAGTGGAGAGTTTAAAGGCCTTGTCCGGGAGCCCAGAATGTCCGATGAGGGAAGGGAATGAGGTCCGTGAAGACACTG--C-CCCCGTTCCAGCCTGCTCCTGCCTGCGCTACAGACGCATTTGCTGAAATGCACCATGGATTAGCAGAAGGGTGGTTAGCAGTGGACGTGCGGTAATGCTCAGGCTTGCAAAGGGCGGAAGGTTGCCAGGTGTTCTGAGCATCTCCAAAACTTCATGGCAGAGGCCAACCCGCCTGGGAACACGG-----CTGACACCCGAAGCCCCAGGAAGGTGGGTTCA----------------------------------------------------------CTTTCGT-CGTTAGTGATTCCTC---CACTGCAAGGTTCATTCACGGCTTGTGTCTCCTCTTGTGTCTGACAGGCTGAAGTGTGTGCAGGCACCGTGGCAGAGGTGATCCAGTCTGTGGTCAACGGGGCGGATGGCTGCGTGTTCTGTTTCGGCCACGCCAAGCTGGGTTCGTGAGAGTTTCGCTG---TCTCATGCGGCTCGCTGGGCTCCCTGTCGTCCCATGTATTCCTCTGTCTCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14345656 601 - 49578535 caCTTATGAAATGGTGGGTCAGCTTTTCCCCCACTAGGAAGCCTGGCCTGTCCTATAAAC--------------------------------TATGTGTATACGTGT------------------------------------GTTAG-----------CAGAGAGTGAACGGAGAGGTTAAAGGTCTTGTCCGGGGGGCCAGA-TGGCAGATGAGGGAAGGGAACGAGGT--------------------CCATTCCAGCCTGTCCCTGCCTGGTCTACAGACGCAGCCGCTGAAATGTACCAAAGATTAGCAGGAGGGTGGTTTGCAGCTCACGTGC-GTACTGCTCAGGCTTGCAAAGGGTGGAAGGTAGCTGAGGGTTCTGAGCATCTCCAGGACGTCACGGCAGAGGCCGACCCACCTGAT-ACACAGTGACACGGGGCCCCAAAGCCCCGGGAAGGTGGGCTCA----------------------------------------------------------CTTTCGT-TGTTAGTGATGCCTC---CACTGCGCGGTCCATTCACGGCTGGTGTCTCCTCTTGTGTCTGACAGGCTGAAGTGTGTGCGGGCACCGTGGCAGAAGTGATCCAGTCTGTGGTCAACGGGGCAGACGGCTGCGTGTTCTGTTTCGGCCACGCCAAGCTGGGTTCGTGAGAGTTTCACCT---TCTGGTGCCGCTCGGCGGGCTCCCTGTCATCCCCTGCATTCTTCTGTGTCC i calJac3.chr19 I 194 M 464 s mm10.chr1 178868902 597 + 195471971 CTGTTCTAAATTGG-AAATCATGTTTTC-CTCTCTAGTATGACTAGCTTGTTTGAGAGATGgtgtgtttgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgt------------------------------------gtAAGGTTCTGGTGGACAGAGAGACAATAGAGAG-TCAAGTTCCTTGCTGAGGAGGC-----TGACAGAGGGGACAAGGGTCCAGAACCCAT------CCCATTC-TCTCACTGCAGCCTG----TACCTACTTTA-AGA--------CTGGAGAGTGCTA-----------AAGGAAGGTTTGTATTCAGTGTGT-------TTCACTGATAACATGGGTAGAAAGTCCCCAGTGTTTTTAAG----------------TGGCAGAGGCTGGACCATCTGGGACTGTGGTGATGCTAGGACTCCAAGCCCCAGGAAGGCAGAGTCA----------------------------------------------------------CTTCTATGTCATTGAGGTGCCTTAGGTGCTGCGCGGTGCATTTAT--CGAGTGCCTTGTCTTGTGTCTTCCAGGCTGAAGTTTGTGCTGGAACTGTGGCCGAAGTCATCCAGTCTGTGGTGAACGGGGCAGATGGCTGTGTGTTCTGTTTTGGCCATGCCAAGCTAGGTGAGTGGAAACTTGACTTCTGTCTTGTGCTGATCACTAGGTAACCT-----------CATTC--CTGTCTCG i mm10.chr1 C 0 I 6 s canFam3.chr7 36449395 631 + 80974532 TTTTCCTGAAATGGCACATTATCTTTTT-CCCACTAATAAGTTTGGTCCATTTCATATAC--------------------------------tgtgtgtctacatgtctgtgtgtgagtgtgtgtgtgtgagtgAAGGATCCAGTTAG-----------CAGAGGGTGGGTGGAAAGTGTAAAAGCCTTGTCCCAGAGACCAGAAGGGCAGCTCAGAAAAGGGTATGAGGTCTGTGAGAGCACCCTGCATCCCTTGCCAGCCTTTTCCTGCCTGGCCTACAGAGACAGCAGCTGAAATGCCCCCAAAATCACCAGAGGGTTGGTTTGCAGGTCATGTGT-ATAAGGCTCAGGCTTGCAAGAGGTGG-AGGCCTTGGAGGGTTCTGAGCA-CCCTGGAACTGCATTACAGC--CTGACCCATCT-ATAGCACCGTGACTGTGGGACCCAAGCCCATGGGAAGGGGG---------------------------------------------------------------CTCCCGT----------TCCCAT---CACTA-ATGGTCCACTCACTGCACATGTCTCCTCTTGTGTCTGCCAGGCTGAAGTGTGTGCCGGAACTGTGGCGGAGGTGATCCAGTCTGTGGTCAACGGGGCGGACGGCTGCGTGTTCTGTTTCGGCCACGCTAAGCTGGGTCAGTGAGAGCTTTCCTC---GTTCCTTCTGT---CTGTATTCCTAGTCA---CGTGGATGT-TCTGTGCCA i canFam3.chr7 C 0 C 0 a score=140912.000000 s hg38.chr1_KI270759v1_alt 302118 50 + 425601 CTCCCAGAG-TTCTCTGATGACAGGAAGGGCTGCGTTTCTCTTAGGTGTTG s panTro4.chr1 225058961 50 + 228333871 CTCCCAGAG-TTCTCTGATGACAGGAAGGGCTGCGTTTCTCTTAGGTGTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226427848 50 - 229942017 CTCCCAGAG-TTCTCTGATGACAGGAAGGGCTGCGTTTCTCTTAGGTGCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140311836 50 - 143122389 CTCCCAGAG-TTCTCTGATGACAGGAAGGGCTGCGTTTCTCTTAGGTGCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17022974 51 - 229590362 CTCCCAGAGTTTCTCTGATGACAGGAAGGGCTGCGTTTCTCTTAGATGCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223786838 51 - 227556264 CTCCCAGAGTTTCTCTGATGACAGGAAGGGCTGCGTTTCTCTTAGATGCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16837074 51 - 220367699 ctcccagAGTTTCTCTGATGACAGGAAGGGCTGCGTTTCTCTTAGATGCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82636781 51 + 85787240 CTCCCAGGGTTTCTCTGATGACAGGAAGGGCTGCGTTTCTCCTAGATGCTG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178869505 49 + 195471971 GTTCTAGA--TTCCTCGATGCGAGGGCAGGCTAAGTTCCCTTTTGGTACCA i mm10.chr1 I 6 C 0 s canFam3.chr7 36450026 48 + 80974532 GTCCCAGCA-TCTGTAGATGAAAGGGAAGGCT--GTTTCCTTTGAGTGCCC i canFam3.chr7 C 0 C 0 e calJac3.chr19 14346257 464 - 49578535 M a score=756235.000000 s hg38.chr1_KI270759v1_alt 302168 268 + 425601 AGCTGAATAACCA---ATAACAA---------GTTATACGACGAAAACCTATGTTGTTCATTGTAGGTGGAC--ACCCATTCATGTAGGAAAGCCTTCAAGTCCAAATAGATG----------------GAAAGAGAAGTAGCAGAGTTGTTCCCACTTGGTCCAGGTCAGAGTCAAGCCCAGAAGGCAGGCA-----GGAAAATATTCA----TTTCCTGAGCA----GCCGCTGTTTGGGAAGCAGATAGGGCCCCTTGCACCACCGCAC-CCATGAGGATGTGGGTTGGTGGTTGGA-CCCCTGTAAAAG s panTro4.chr1 225059011 268 + 228333871 AGCTGAATAACCA---ATAACAA---------GTTATACGACGAAAACCTATGTTGTTCATTGTAGGTGGAC--ACCCATTCATGTAGGAAAGCCTTCAAGTCCAAATAGATG----------------GAAAGAGAAGTAGCAGAGTTGTTCCCACTTGGTCCAGGTCAGAGTCAAGCCCAGCAGGCAGGCA-----GGAAAATATTCA----TTTCCTGAGCA----GCCGCTGTTTGGGAAGCAGATAGGGCCCCTTGCACCACCCCAC-CCATGAGGATGTGGGTTGGTGGTTAGA-CCCCTGTAAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226427898 267 - 229942017 AGCTGAATAACCA---ATAACAA---------GTTATACGACGAACACCTATGTTGTTCATTGTAGGTGGAC--ACCCATTCATGTAGGAAAGCCTTTACGTCCAAA-AGATG----------------GAAAGAGAAGTAGCAGGAGTGTTCTCACTTGGTCCAGGTCAGAGTCAAGCCCAGAAGGCAGGCA-----GGAAAATGTTCA----TTTCCTGAGCA----GCCGCTGTTTGGGAAGCAGATAGGGCCCCTTGCACCACCCTGC-CCATGAGGATGTGGGTTGGTGGTTGGA-CCCCTGTAAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140311886 268 - 143122389 AGCTGAATAACCA---ATAACAA---------GGTATATGATGAACACCTATGCTGTTCATTGTAGGTGGAC--ACCCATTCATGTAGGAAAGCCTTCAAGTCCAAA-AGATG----------------GAAAGAGAAGTAGCAGGGTTGTTCCCACTTGGTCCAGGTCAGAGTCAAGCCCAGAAGGCAGGCA-----GGAAAATGTTCA----TTTCCTGAGCA----GCCGCTGTTTGGGAAGCAGATAGGGCCCCTTGCACCACCCCCCACCATGAGGATGTGGGTTGGTGGTTGGA-CCACTGTAAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17023025 263 - 229590362 AGCTGAATAACCA---GTAACAA---------GTTATAAGACAAACACCTA---TGTTCGTTGTAGGCTGAC--ACCCACTCATGTAGGAAAGGCTTCAAGTCCAAG-AGATG----------------GACAGAGAAGTAGCAGGGTTGTTCCCACTTGGTCCAGGTCAGAGCCAAGCCCAGAAGGCAGAAA-----GGAAAATGTTCA----TTTCCTGAGCA----GCCGCTGTTTGGGAAGCAGATA-GGCCCCTTGCCCTACCCCCT-CCATGAGGCTGTGGGTTGGTGGTTGGA-CCCCTGTGAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223786889 263 - 227556264 AGCTGAATAACCA---GTAACAA---------GTTATAAGACAAACACCTA---TGTTCGTTGTAGGCGGAC--ACCCACTCATGTAGGAAAGGCTTCAAGTCCAAT-AGATG----------------GACAGAGAAGTAGCAGGGTTGTTCCCACTTGGTCCAGGTCAGAGCCAAGCCCAGAAGGCAGAAA-----GGAAAATGTTCA----TTTCCTGAGCA----GCCGCTGTTTGGGAAGCAGATA-GGCCCCTTGCCCTACCCCCT-CCATGAGGCTGTGGGTTGGTGGTTGGA-CCCCTGTGAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16837125 263 - 220367699 AGCTGAATAACCA---GTAACAA---------GTTATAAGACAAACACCTA---TGTTCGTTGTAGGCGGAC--GCCCACTCATGTAGGAAAGGCTTCAAGTCCAAG-AGATG----------------GACAGAGAAGTAGCAGGGTTGTTCCCACTTGGTCCAGGTCGGAGCCAAGCCCAGAACGCAGAAA-----GGAAAATGTTCA----TTTCCTGAGCA----GCTGCTGTTTGGGAAGCAGATA-GGCCCCTTGCCCTACCCCCT-CCATGAGGCTGTGGGTTGGTGGTTGGA-CCCCTGTGAAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82636832 264 + 85787240 AGCTGAATAACCA---GTAACAA---------GTTATAAGACAAACACCTG---TGTTCGTTGTAGGTGGAC--ACCCACTCACGTAGGAAAGGCTTCAAGTCCAAG-AGATG----------------GACAGAGAAGTAGCAGGGTTGTTCCCACTTGGTCCAGGTCAGAGCCAAGCCCAGAAGGCAGAAA-----GGAAAATGTTCA----TTTCCTGAGCA----GCCGCTGTTTGGGAAGCAGATAGGGCCCCTTGCCCCACCCCCT-CCATGAGGCTGTGGGTTGGTGGTTGGA-CCCTTGTGAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14346721 262 - 49578535 AGCTAAATAACCA---ATAACAA---------GTTACATGACGAACA-CTATGTTGTTCATCGCAGGCGGAC--ACCCATTCATGTAGGAAAGCTTTCAAGTCCAAG-AGATG----------------GACAGAGAAGCAGCAGGGTTGTTCCTACTGGGTCCAGGTCAG----AAGCCCAGAAGGCAGGCG-----GGGAAACATTGA----CTTCCTGAGCA----GCTGCTGTTGGGGAAGCAGATAGGGCCCCTTGCACCGCGCC-T-CCACGAGGATGTGGGTTGGTGGTTGGAGCCCTTGTAAAAG i calJac3.chr19 M 464 I 298 s mm10.chr1 178869554 226 + 195471971 AACTGAGTGATAA---AGAACAACCATGCCTGACTTTGAAACAA----------TGTCAGTCCTAAGTGGACAGACCTATTCCCATAAGACAG-CTTCAACTCCAAG-AGGGG----------------AATAACAGGATAACGAGGTCA-------TAGGTCAAGGTCATAGTCAAGCCCAGGGAGTAGAGAAGCAGGGAAGGTGTTCATGTCTGTCTTGATCATGGGATGGATGTCTGGGAAGCAGAT---------------------T-C-----------GGGTGGGTGGAG---------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36450074 229 + 80974532 AATTGAAGAATCACTGGTTGCTG---------TTTCTG----------CTTTTTTTTTTTTTTTCTGT------TTCTGCTTTTGAAATGCAGCGTTCA---TCAAG-TGGGGACTGACTTAGTCTTCTAAGGAAGGGGTAGTGGGGTGCTTCCCACTTGGTCCAGGTCAAGGGCACGCCCAGAAAGCCAGCA-----GGAGGAGGGACA----CCCACTGAGCA----GGGGCTCCTGGG------------------------------T-TCA----------GGGTAGTGGATGGA-GCCCACAAAAAA i canFam3.chr7 C 0 C 0 a score=1852411.000000 s hg38.chr1_KI270759v1_alt 302436 588 + 425601 CCAGAGGAGCAACCTCCAAGCAAAGCCC-------------AGAGCC----CAGGGCGCGTCTGGA---------------GAAAGCAGTGCACACCGTCGGGAACACTCCAGCGCTGAAGCGTCTGGGAAAGGAGGCAGCAGAGC--CCCCCAACAAGGGGTT--CA------TAAATCCCC--CC---------ACAGTCCCATCTTACTTCTGACCTGTGGCCATCTGCTCCCCAGGCCTTGCC---CTTACACGCTTGATATGTTTAGTGAATTGAGGAGCTTCAAAAACTGTCCCTTGGCAGAG------ATTCCAACAGAGGCCTTGCTGGAGCTCACAGAGGCCAGTTCTCAGCCAGGACAGAAAGCCATTGCCTCTCTCTGCACTTCCGTCCTCCCCAGCCCTTTCTCTTGATC-TTGATGTAAGCAGTGATCTGGGTTTTAATAGAATTTGCTCATGCCATAAAAA-------TATACA--------------CAGCATTTAACTTGAGACAGGATATAAAGTGTGAATATGTGGACTTAATCT-GGGGGGTAACTATAAAAAGAACCATAATGATGATGAAAAAGCCCAGCCTTCCCACTGTGTGTAAAGCAGTGCAGGAACTGGATAGCATGTGATATTTGGGGTCC--------TCCTCAAGGTACATG s panTro4.chr1 225059279 588 + 228333871 CCAGAGGAGCAACCTCCAAGCAAAGCCC-------------AGAGCC----CAGGACGCGTCTGGA---------------GAAAGCAGTGCACACCGTCGGGAACACTCCAGCGCTGAAGCGTCTGGGAAAGGAGGCAGCAGAGC--CCCCCAACAAGGGGTT--CA------TAAATCCCC--CC---------ACAGTCCCATCTTACTTCTGACCTGTGGCCGTCTGCTCCCCAGGCCTTGCC---CTTACACGCTTGATATGTTTAGTGAATTGAGGAGCTTCAAAAACTGTCCCTTGGCAGAG------ATTCCAACAGAGGCCTTGCTGGAGCTCACAGAGGCCGGTTCTCAGCCAGGACAGGAAGCCATTGCCTCTCTCTGCACTTCCGTCCTCCCCAGCCCTTCCTCTCGATC-TTGATGTAAGCAGTCATCTGGGTTTTAATAGAATTTGCTCATGCCATAAAAA-------TATACA--------------CAGCATTTAACTTGAGACAGGATATAAAGTGTGAATATGTGGACTTAATCT-GGGGGGTGACTATAAAAAGAACCATAATGATGATGAAAAAGCCCAGCCTTCCCACTGTGTGTAAAGCAGTGCAGGAACTGGATAGCATGTGATATTTGGGGTCC--------TCCTCAAGGTACATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226428165 587 - 229942017 CCAGAGGAGCAACCTCCAAGCAAAGCCC-------------AGAGCC----CAGGACGGGTCTGGG---------------GAAAGCAGTGCACACCGTCGGGAACACTCTAGCACTGAAGCATCTGGGAAAGGAGGCAGCAGAG---CCCCCAGCGAGGGGTT--CA------TAAATCCCC--CC---------ACAGTCCCATCTTAATTCTGACCTGCGGCCATCTGCTCCGCAGGCCTTGCC---CTTACATGCTTGATATGTTTAGTGAATTGAGGAGCTTCAAAAACTGTCCCTTGGCAGAG------ATTCCAACAGAGGCCTTGCTGGAGCTCACAGAGGCCAGTTCTCAGCCAGGACAGAAAGCCATTGCCTCTCTCTGCACTTCTGTCCTCCCCAGCCCTTCCTCTTGATC-TTGATCTAAGCAGTGATCTGGATTTTAATAGAATTTGCTCATGCCATAAAAA-------TATACA--------------CAGCATTTAACTTGAGACAGGATATAAAGTGTGAATATGTGGACTTAATCT-GGGGGGTGACTATAAAAAGAATCATAATGATGATAAAAAACGCCTGCCTTCCCACTGTGTGTAAAGCAGTGCAGGAACTGGATAGCATGTGACATCTGGGGTCC--------TCCTCAAGGTACATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140312154 582 - 143122389 CCAGAGGAGCAACCTCCAAGCAAAGCCC-------------AGAGCC----CAGGACGCGTCTGGG---------------GAAAGCGGTGCACACCGTCGGGAACGCTCCAGCGCTGAAGCGTCTGGGAAAGGAGGCAGCAGAGC--CCCCCAACAAGGGGTT--CA------TAAATCCCC--CC---------ACAGTCCCATCTTAATTCTGACCTGCGGCCACCTGCTCCGCAGGCCTTGCC---CTGACACACTTGATATGTTTAGTGAATTGAGGAGCTTCAAAAACTGTCCCTTGGCCGAG------ATTCCAGCAGAGGCCTTGCTGGAGCTCACAGAGGCCAGTTCTCAGCCAGGACGGAAAGCCATTGCCTCTCTCTGCACTTCCGTCCTCCCCAGCCCTTCCTCCTGATC-------TAAGCAGTGATCTGGATTTTAATGGAATTTGCTCATGCCATCAAAA-------TATACA--------------CAGCATTTAACTTGAGACAGGATATAAAGTGTGAATATGTGGACTTAATCTGGGGGGGTGACTATAAAAAGAACCATAATGATGAGGAAAAACCCCTGCCTTCCTACTATGTGTAAAGCAGTG-AGGAACTGGATAGCATGTGATATTTGGGGTCC--------TCCTCAAGGTACATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17023288 580 - 229590362 CCAGAGGAGCAACCTCCAAGCAAAGCCC-------------AGAGCC----CAGGACGCGTCTGGG---------------GAAAGCAGTGCACACCATCAGGAACACTCCAGCACTGGAGCGTCTGGGAAAGGAGGCAGCAGAG---CCCCCAGCAAGGGGTT--CA------TAAATCCCC--CC---------ACAGTCCCATTTTAATTCTGACCTGCGGCCATCTGCTCCGCTGGCCCCGCC---CTCACACGCTTGATATGTTTAGTGAATTGAGGAGCTTCAAAAAGTGTCCCTTGGCAGAG------ATTCCAACAGGGGCCTTGCTAGAGCTCATGGAGACCAGTTCT----CAGGACAGAAAGCCATCACCTCTCTCTGCACTTCTGCCCTCCCCAGCCCTTCCTCTTGATC-TTGATCTAAACAGTGATCTGGATTTTAATGGAATTTGCTCATGTCATAAAAA-------TATACA--------------CAGCATTTAACTCGAGACAGGATATAAAGTGTGAATATGTGGGCTTCATCT-GGGGGGTGGCTATAAA---AACTATAATGATGATGAAAAACCCGTGCCTTCCTACTGTGTGTAAAGTAGTACAGGAACTGGATAGCATGGGATATCTGGGGTCC--------TCCTCAAGGTACATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223787152 580 - 227556264 CCAGAGGAGCAACCTCCAAGCAAAGCCC-------------AGAGCC----CAGGACGCGTCTGGG---------------GAAAGCAGTGCACACCATCAGGAACACTCCAGCACTGGAGCGTCTGGGAAAGGAGGCAGCAGAG---CCCCCAGCAAGGGGTT--CA------TAAATCCCC--CC---------ACAGTCCCGTTTTAATTCTGACCTGCGGCCATCTGCTCCGCTGGCCTCGCC---CTCACACGCTTGATATGTTTAGTGAATTGAGGAGCTTCAAAAAGTGTCCCTTGGCAGAG------ATTCCAACAGGGGCCTTGCTAGAGCTCATGGAGACCAGTTCT----CAGGACAGAAAGCCATCACCTCTCTCTGCACTTCTGCCCTCCCCAGCCCTTCCtcttgatc-ttgatctaaacagtgatctggattttaatGGAATTTGCTCATGCCATAAAAA-------TATACA--------------CAGCATTTAACTCGAGACAGGATATAAAGTGTGAATATGTGGGCTTCATCT-GGGGGGTGGCTATAAA---AACTATAATGATGATGAAAAACCCGTGCCTTCCTACTGTGTGCAAAGTAGTACAGGAACTGGATAGCATGGGATATCTGGGGTCC--------TCCTCAAGGTACATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16837388 583 - 220367699 CCAGAGGAGCAACCTCCAAGCAAAGCCC-------------AGAGCC----CAGGACGCGTCTGGG---------------GAAAGCGGTGCACACCGTCAGGAACACTCCAGCACTGGAGCGTCTGGGAAAGGAGGCAGCAGAG---CCCCCAGCAAGGGGTT--CA------TAAATCCCC--CC---------ACAGTCCCGTTTTAATTCTGACCTGCGGCCATCTGCTCCGCTGGCCTCGCC---CTTACACGCTTGATATGTTTAGTGAATTGAGGAGCTTCAAAAAGTGTCCCTTGGCAGAG------ATTCCAACAGGGGCCTTGCTAGAGCTCACGGAGACCGGTTCT----CAGGACAGAAAGCCATCACCTCTCTCTGCACTTCCGCCCTCCCCAGCCCTTCCTCTTGATC-TTGATCTAAACAGTGATCTGGATTTTAATGGAATTTGCTCATgccataaaaa-------tataca--------------cagcATTTAACTCGAGACAGGATATAAAGTGTGAATATGTGGGCTTCATCT-GGGGGGTGGCTATAAAAAGAACCATAATGATGATGAAAAACCCGTGCCTTCCTACTGTGTGTAAAGTAGTGCAGGAACTGGATAGCATGGGATATCTGGGGTCC--------TCCTCAAGGTACATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82637096 578 + 85787240 CCAGGGGAGCAACCTCCAAGCAAAGCCC-------------AGAGCC----CAGGACGCGTCTGGG---------------GAAAGCGGTGCACACCATCAGGAACACTCCAGCACT-----GTCTGGGAAAGGAGGCAGCAGAG---CCCCCAGCAAGGGGTT--CA------TAAATCCCC--CC---------ACAGTCCCGTTTTAATTCTGACCTGTGGCCATCTGCTCCACTGGCCTCGCC---CTTACATGCTTGATATGTTGAGTGAATTGAGGAGCTTCAAAAAGTGTCCCTTGGCAGAG------ATTCCAACAGGGGCCTTGCTAGAGCTCACGGAGACCAGTTCT----CAGGACAGAAAGCCATCACCTCTCTCTGCACTTCCGCCCTCCCCAGCCCTTCCTCTTGACC-TTGATCTAAACAGTGATCTGGATTTTAATGGAATTTGCTCATGCCATAAAAA-------TATACA--------------CAGCATTTAACTCGAGACAGGATATAAAGTGTGAATATGTGGGCTTCATAT-GGGGGGTGGCTATAAAAAGAACCATAATGATGATGAAAAACCCATGCCTTCCTACTGTGTGTAAAGTAGTGCAGGAACTGGATAGCATGTGATATCTGGGGTCC--------TCCTCAAGGTACATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14347281 549 - 49578535 CCAGAGGAGCAACCTGCAAGCAAAG-CC-------------AGGGCTGTGGTGGGTCGCCTCTGGG---------------GGAAGCGTTGCCCGCTGTCAGGAACGCTCCAGCGCTGAAGCATCTGGGAAAGGAGGCAGCAGAGT--CCCCCAGCAAGAGGTT--CA------TAATCTGCC--CCCTGCCACCACCAGTCCCTTCTTAATTCTGGCCTGTGGCCATCTGCTC------------------TACACACTTGATATGCTTAGTGAATTGAGGAGCTCCAAAAAGTGTCCCTTGGCAGAG------ATTCCAACAGAGGCCTGGC-AGAGCTCACGGAGGCCGGTTCTCAGCCAGGACAGAAAGCCATGGCCCCTCTCTGCACTTCCATCCTCCCT-GCCCTTC-------------------------GTCTGGATTCTAATGAAATTTGCTCATGCCGTAAAAA-------TATACA--------------CTGCATTTAACTTGAAAAAGGATATAAAGGGTGAATATGTGGAC-TAATCT--GTGGGTGACCATAAAGAGAACCATGATG-----GAAAAGCCCCCTCCCTCCTGCTGTGT---AAACAGTGCGGAAACTGGATAGCATGCGATATTTGAGGTCC--------TCCTCAAGGTGCGCT i calJac3.chr19 I 298 C 0 s mm10.chr1 178869780 605 + 195471971 CCAATGGAGGAATCTCCAAGCAGAGTCCCACATGGGGGAAGCAAACC----AAAGCTGTCCTTGGGCCAACATCCAGCCCTGTGAGGAGTGCTCCCTGTGAAAAGTCCTCCC-CGTTTCAGCACTTGAGAAAGAAGCCACCAACT---AGCGCTGCAAAACATTGGCT------TAAATCCCCTGCT---------ACATTCTCTTTCCAGTCCTGATCT------CTCTGCCTCCCAGGCCTTGTCAGATGTACA-----GAAAGAGTTAGCAATTTCGGAAGCTT------------CTTGGTAGAAGAAATCATCCCA----GAGCCTTG-TAGAGGACACAGAGACC---TCTCCCCTGTGACAGAGAGCC----CATTCCACCCCACCCCCACTCCTTTCTTCACTTC---TTGATCACAGATCAAAGCAGGGGTCCCGATTTTAATGGAATTTGCTCATGCTATTAaaaacaaaacaaaacaaaaccaaagcaaaCCAGCATTTAACTTGAGAAAGGATATAAAGCACGCATGTGTGGATTTAATCT-GTGGGGTAGCTATAAAAAGGACTGTAATCGTGATGAAAAGCCCCAG-CTTCCTACTTCATGTAGAACAAGCCCAAAGGCAGATAGCCTG-----TTTGAGGTCC--------TCTGCAAGGCCCCTT i mm10.chr1 C 0 C 0 s canFam3.chr7 36450303 528 + 80974532 --------CCAGCCTCCAAGCAAAGCCC-------------AAAACCGTGTCGGAACCCATCTGGG---------------GAGAGTGT---------CTAAGCACAGCACAG-ACTGGAG----GGAGAAAGAAGGAGGTGGAGAAGCACCCGGACAGGGGTT--TGGATGGCTAGACCCCC--AT---------AAGGTGCCTTCTGAATCCGGGCCTGTGGCCATCTGCTCAGCAGGCCCTAGC----TTCCGCGCT-GAGGAAGTTAGTAATTTGGGGTGCTCC-GGAAGTACCCCTCGGCAGAGAG----ATTCCCACAAAGGCCTCAC----AGTGAGAGAGGCCAGTTTTAGGCTGAGACAG-------------CTCA------TTCAGCTCCCTTCTG----TCTTCTTGATCTCTGATCAAAGCAGCAATCCAGATTTAAACAGAATTTGCTCCCGCTGTAAAAA-------TATACC--------------CTGCATTTAACTTGAGGAAGGTTATAAAGTGTAAGTCTGTGGATTCAATCT-GTGGGGTGGTGATAAAAAGAACCATCACAGCGATGAAAGATCTCCG-------------------------------CTGGATAGCCTGTGATGCTCGGGACACCCGTTCTGTCCTCAGGCTGGATG i canFam3.chr7 C 0 I 23 a score=161265.000000 s hg38.chr1_KI270759v1_alt 303024 67 + 425601 GTGATTTAATCTTGTCACATGTCTGGGCTCTTGCtttgtttcttttttttttaagagat-----ggctctca s panTro4.chr1 225059867 67 + 228333871 GTGATTTAATCTTGTCACGTGTCTGGGCACTTGCtttgtttcttttttttttaagagat-----ggctctca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226428752 66 - 229942017 GGGATTTAATCTTGTCACATGTCTGGGCTCTTGCtttgtt--ttttttctttaagagatg----ggctctca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140312736 69 - 143122389 GTGATTTAATCTTGTCACATGTCTGGGCTCTTGCtttgt---ttttttttttaagagatgggctggctctca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17023868 65 - 229590362 GTGATTTAATCCTGTCACATGTCTGGGCTCTTGCtttgt---ttctttttttaagagatg----ggctctca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223787732 65 - 227556264 GTGATTTAATCCTGTCACATGTCTGGGCTCTTGCtttgt---ttctttttttaagagatg----ggctctca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16837971 61 - 220367699 GTGATTTAATCCTGTCACATGTCTGggctcttgc----t---ttctttttttaagagatg----ggctctca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82637674 65 + 85787240 GTGATTTAATCTTGTCACATGTCTGGGCTCTTGCtttgt---ttctttttttaagagatg----ggctctca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14347830 55 - 49578535 GTGATTTAATTT-------TGTCTGGGCTCTTGCTTTGC------Gttttttaagagata----ggctctca i calJac3.chr19 C 0 C 0 s mm10.chr1 178870385 33 + 195471971 GTGACTTCACCCTGTCATTTGTTTGGGCTCTCA--------------------------------------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36450831 23 + 80974532 I a score=802123.000000 s hg38.chr1_KI270759v1_alt 303091 269 + 425601 gttgcctgggctggagtacagtggcatgctcatagattactgtaacctccaattcctgggctcaagtgatcctctcgcctcagcttcccaagtagctggggccacaggcatgccccaccacacccagataatttttaaaaattt-ttcatagaggcagggtctccgtatgttgcccagactggcctggaactcctggcctcaagcaatcctcccatcttggcccccacaaagtgctgaggttacaggcatgagccactgagcccaaccAG s panTro4.chr1 225059934 269 + 228333871 gttgcctgggctggagtacagtggcatgctcatagattactgtaacctccaattcctgggctcaagtgatcctctcgcctcagcttcccaagtagctggggccacaggcatgccccaccacacccagataatttttaaaaattt-ttcatagaggcagggtctccgtatgttgcccagactggcctggaactcctggcctcaagcaatcctcccgtcttggcccccacaaagtgctgagattacaggcatgagccactgagcccaaccAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226428818 269 - 229942017 gttcctggggctggagtatagtggcatgctcatagatgactgtaacctccatttcctgggctcaagtgatcctcttgcctcagcttcccaagtagctggggccacagggatgccccaccacacccagataatttttaaaaattt-ttcatagaggcagagtctcagtatgttgcccagactggcctggaactcctggcctcaagcaatcctcccatcttggcccccacaaagtgctgagattacaggcatgagccactgagcccagccAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140312805 269 - 143122389 gttgcctgggctggtgtacagtgacatgctcatagattactgtaacctccaattcctgggctcaagcaatcctctcgcctcagcttcccaagtatctggggccacaggcatgccccaccacacccagataatttttaaacattt-ttcatagaggcagggtctcagtatgttgcccagactggcctggaactcctggcctcaaatgatccctccatcttggcccccgcaaagtgctgagattacaggcatgagccactgagcccagccAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17023933 269 - 229590362 gttgcctgggctggagtacagtggcatgatcatagattactgaaacctccaattcctgggctcaagtgatcctctcgcctcagcttccccagcaactggggccacgggcatgccacaccacacccaactgatttttaaaaattt-ttcctagaggcagggtctcagtgtgttgcacaaactggcctggaaatcctggcctcaagcaatcctcccatcttggccctgccaatgtgctgagattacaggcatgagccactgagcccagccAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223787797 269 - 227556264 gttgcctgggctggagtacagtggcatgatcatagattactgtaacctccaattcctgggctcaagtgatcctctcgcctcagcttccccagcaactggggccacgggcatgccacaccacacccaactgatttttaaaaattt-ttcctagaggcagggtctcagtgtgttgcacaaactggcctggaaatcctggcctcaagcaatcctcccatcttggccctgccaaagtgctgagattacaggcatgagccactgagcccagccAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16838032 269 - 220367699 gttgcctgggctggagtacagtggcatgatcatagatTACTGTaatctccaattcctgggctcaagtgatcctctcgcctcagcttccccagcaactggggccacaggcatgccacaccacacccaactgatttttaaaaattt-ttcctagaggcagggtctcagtgTGTTGCACAAACTGGCCtggaaatcctggcctcaagcaatcctcccatcttggccctgccaaagtgctgagattacaggcatgagccactgagcccagccag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82637739 269 + 85787240 gttgcctgggctggagtacagtggcatgatcatagattactgtaacctccaattcctgggctcaagtgatcctctcgcctcagcttccccagcagcttggggcacaggcatgccccaccacacccaactgatttttaaaaattt-ttcctagaggcagggtctcagtgtgttgcccagactggcctggaactcctggcctcaagcaatcctcccatcttggccctgccaaagtgctgagattacaggcatgagccactgagcccagccAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14347885 268 - 49578535 gttgcctgggctggaggacaatggcatgctcacagattactgtaacctccaattcctgggctcaagcgatcctctcgcctcagcctctcaagtggctgggaccacaggcatgccccaccacacccagctaatttttaaacatttgtttatagaggcagggtctcagtatgtcacccagactggcctggaactcctggcctcaagcagtcctcccaccttgg-cctctcaatgtgctgagattacaagcatgagccactgagcccag-cAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178870418 0 + 195471971 C e canFam3.chr7 36450831 23 + 80974532 I a score=98022.000000 s hg38.chr1_KI270759v1_alt 303360 31 + 425601 CATTCTTTATTGTAGCCATTTAGTTAGTAAT s panTro4.chr1 225060203 31 + 228333871 CATTCTTTATTATAGCCATTTAGTTAGTAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226429087 31 - 229942017 CATTCTTTATTATAGCCATTTAGTTATGAAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140313074 31 - 143122389 CATTCTTTATTGTAGCCATTTAGTTAGTAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17024202 31 - 229590362 CATTCTTTATTATAGCCATTTAGTTAGTAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223788066 31 - 227556264 CATTCTTTATTATAGCCATTTAGTTAGTAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16838301 31 - 220367699 caTTCTTTATTATAGCCATTTAGTTAGTAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82638008 31 + 85787240 CATTCTTTATTATAGCCATTTAGTTAGTAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14348153 31 - 49578535 CCTTCTTCATTATGGCCATTTAATTAGTAAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178870418 29 + 195471971 CATTCTT--TTATAGCTGCTTCACCTCCAGT i mm10.chr1 C 0 C 0 e canFam3.chr7 36450831 23 + 80974532 I a score=4439544.000000 s hg38.chr1_KI270759v1_alt 303391 1125 + 425601 ACCAGAAAATGCCTTCT---GTTGTTGTCA------AATACTATTTCTCTCATCTTTTTGTTCCTTCTCTTCCCTTTTCCCCCCTTCCCTGTGCCTTTCTTCTATATCCTTGGCATCTA-TTTTGGAGACTCCGTGGAATGATGCCTGGACACTGAACCTGCTTTTCTTCCTTCCCTGGTTCTCCCAGGAAAATCCTACACCATGATCGGAAAGGATGATTCCATGCAGAACCTGGGCATCATTCCCTGTGCCATCTCTTGGCTCTTCAAGCTCATAAACGAACGCAAGGAAAAGACCGGCGCCCGTTTCTCAGTCCGGGTTTCCGCCGTGGAAGTGTGGGGGAAGGAGGAGAACCTGCGGGACCTGCTGTCGGAGGTGGCCACGGGCAGCCTGCAGGACGGCCAGTCCCCGGGCGTGTACCTCTGTGAGGACCCCATCTGCGGCACGCAGGTGATT----GCTTCTGAAGCCTGGCTCGCCCCAAGGTGGCTCCCTCCCCACCTCAGAGGCTGGG-----GCAGCTCCACCCGTGAATCACTGAACCTGTAAACTCAG-AG--GCTTACGGGTGTTTACTTTAAAGTG-GACTGGAACTTTATGGCCTGCAGCTGTGGGGCCATCGGCTTGCCCAGTCTAAATATTTGTACCTTGACTCTAATTGACAATGAGCAGGGACCACAA---TTACAGCATTTGGGGGAGAAATGGAATTCACTTTCTTTATGCCCCTTTC--A-------AAAAAAAAAAGTAACAATCTTTCTTTTGTTT-AACAACAAACCGGAATATTTACTGCTCTGCACAAATAGCTAGAGCCATTAC-GGGGCTGTTGATGACTCTATAAACTGTGCTTCTGGCACTGG-TTTACAGCCGGATTAGCAGTGCTGCAGGAAAAACTAATAACCACTTTCTAATTAGAACCGTGATATAATTGCTAGAACTATGGAAGCCAAGAGAAGCTCCAGTTCACCATTTCAGGATGCTAAGCCTGTTGGGAGG-------GTCTCTCCTTTGCTGTTTGACAACAGATGTAGGAATGACCCGGGAGCT---GC--AATTCATTCATATCCAGAATAATCAATCCTTCCAGTCTCTAACAGTAGGCTTTATTTTCCCGTGTTGTCAGATGCCTCCTTTTGTAGATAGGTGTTCCGTTTG s panTro4.chr1 225060234 1127 + 228333871 ACCAGAAAATGCCTTCT---GTTGTTGTCA------AATACTATttctctcatctttttgtcccttctcttcccttttccccccttccctGTGCCCTTCCTCTATATCCTTGGCATCTA-TTTTGGAGACTCCGTGGAATGATGCCTGGACACTGAACCTGCTTTTCTTCCTTCCCTGGTTCTCCCAGGAAAATCCTACACCATGATCGGAAAGGATGATTCCATGCAGAACCTGGGCATCATTCCCTGTGCCATCTCTTGGCTCTTCAAGCTCATAAACGAACGCAAGGAAAAGACCGGCGCCCGTTTCTCAGTCCGGGTTTCCGCCGTGGAAGTGTGGGGGAAGGAGGAGAATCTGCGAGACCTGCTGTCAGAGGTGGCCACGGGCAGCCTGCAGGACGGCCAGTCCCCGGGCGTGTACCTCTGTGAGGACCCCATCTGCGGCACGCAGGTGATT----GCTTCTGAAGCCTGGCTCGCCCCAAGGTGGCTCCCTCCCCACCTCAGAGGCTGGG-----GCAGCTCCACCCGTGAATCACTGAACCTGTAAACTCAG-AG--GCTTACGGGTGTTTACTTTAAAGTG-CACTGGAACTTTATGGCCTGCAGCTGTGGGGCCATCGGCTTGCCCAGTCTAAATATTTGTACCTTGACTCTAATTGACAATGAGCAGGGACCACAA---TTACAGCATTTGGGGGAGAAATGGAATTCACTTTCTTTATGCCCCTTTCAAA-------AAAAAAAAAAGTAACAATCTTTCTTTTGTTT-GACAACAAACCGGAATATTTACTGCTCTGCACAAATAGCTAGAGCCATTAC-GGGGCTGTTGATGACTCTATAAACTGTGTTTCTGGCACCGG-TTTACAGCCGGATTAGCAGTACTGCAGGAAAAACTAATAACCACTTTCTAATTAGAACCGTGATATAATTGCTAGAACTATGGAAGCCAAGAGAAGCTCCAGTTCACCGTTTCAGGATGCTAAGCCTCTTGGGAGG-------GTCTCTCCTTTGCTGTTTGACAACAGATGTAGGAATGACCCGGGAGCT---GC--AATTCATTCATATCCAGAATAATCAATCCTTCCAGTCTCTAACAGCAGGCTTTATTTTCCCGTGTTGTCAGATGCCTCCTTTTGTAGATAGGTGTTCCGTTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226429118 1124 - 229942017 ACCAGAAAATGCCTTCT---GTTGTTGTCA------AATACTATttctctcatcttttcgttccttctcttcccttttccccccttccccgtgcctttcctCTATATCCTTGGCATGTA-TTTTGGAGACTCCGTGGAATGATGGCTGGACACTGAACCTGCTTTTCTTCCTTCCCTGGTTCTCCCAGGAAAATCCTACACCATGATCGGAAAGGACGATTCCATGCAGAACCTGGGCATCATTCCCTGTGCCATTTCTTGGCTCTTCAAGCTCATAAACGAACGCAAGGAAAAGACCGGCACCCGTTTCTCAGTCCGGGTTTCCGCCGTGGAAGTGTGGGGGAAGGAGGAGAACCTGCGGGACCTGCTGTCGGAGGTGGCCACGGGCAGCCTGCAGGATGGCCAGTCCCCGGGCGTGTACCTCTGTGAGGACCCCATCTGCGGCACGCAGGTGATT----GCTTCTGAAGCCTGGCTCGCCCC----TGGCTCCCTCCCCACCTCAGAGGCTGGG-----GCAGCTCCACCCATGAATCACTGAACCTGTAAACTCAG-AG--GCTTACGGGTGTTTACTTTAAAGTG-GACTGGAACTTTACGGCCTGCAGCTGCGGGGCCATCTGCTTGCCCAGTCTAAATATTTGTACCTTGACTCTAATTGACAATGAGCAGGAACCACAATTGTTGTAGCATTTGGGGGAGAAATGGAATTCACTTTCTTTATGCCCCTTTC--A-------AAAACAAAAAGTAACAATCTTTCTTTTGTTT-AACAACAAACCGGAATATTTACTGCTCTGCACAAATAGCTAGAGCCATTAC-GGGGCTGTTTATGACTCTATAAACTGTGTTTCTGGCACCGG-TTTACAGCCGGATTAGCAGTGCTGCAGGAAAAACTAATAACCACTTTCTAATTAGAACCATGATATAATTGCTAGAACTATGGAAGCCAAGAGAAGCTCCAGTTCACCATTTCAGGATGCTATGCCTGTTGGGAGG-------GTCTCTCCTTTGCTGTTTGACAATAGATGTAGGAATGACTCAGGAGCT---GC--AATTCATTCATATCCAGACTAATCAATCCTTCCAGTCTCTAACAGTAGGCTTTATTTTCCCGTGTTGTCAGATGCCTCCTTTTGTAGATAGGTGTTCCGTTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140313105 1128 - 143122389 ACCAGAAAATGCCTTCT---GTTGTTGTCA------AATACTATCTCTCTCATCTTTTTGTTCCTTCTCTTCCC-TTTCCCCCCTTCCCCGTGCCTTTCTTCTATATCCTTGGCATCTC-TTTTGGAGACTCCATGGAATGATGCCTGGACACTGAACCTGCTGTTCTTCCTTCCCTGGTTCCCCCAGGAAAATCCTACACCATGATCGGAAAGGACGATTCCATGCAGAACCTGGGCGTCATCCCCTGTGCCATCTCTTGGCTCTTCAAGCTCATAAATGAACGCAAGGAGAAGACGGGCACCCGTTTCTCAGTCCGGGTTTCCGCCGTGGAAGTGTGGGGGAAGGGGGAGAACCTGCGGGACCTGCTGTCGGAGGTGGCCACGGGCAGCCTGCAGGACGGCCAGTCCCCGGGCGTGTACCTCTGCGAGGACCCCATCTGCGGCACGCAGGTGATT----GCTTCCGAAGCCTGGCTCGCCCCAAGGTGGCTCCCTCCCCACCTCAGAGGCGGGG-----GCAGCTCCACCCGTGAATCACTGAACCTGTAAACTCAG-AG--GCTTACGGGTGTTTACTTTAAAGTG-GACTGGAACTTTACGGCCTGCAGCTGCGGGGCCATCTGCTTGCCCAATCTAAATATTTGTACCTTGACTCTAATTGACAATGAGCAGGAACCACAATTGTTGTAGCATTTGGGGGAGAAATGGAATTCACTTTCTTTATGCCCCTTTC--A-------GAAAAAAAAAGTAACAATCTTTCTTTTGTTT-AACAACAAACCGAAATATTTACTGCTCTGCACAAATAGCTAGAGCCATTACGGGGGCTGTTTATGACTCTATAAACTGTGTTTCTGGCACCGG-TTTACAGCCGGATTAGCAGTGCTGCAGGAAAAACTAATAACCACTTTCTAATTAGAACCATGATATAATTGCTAGAACTATGGAAGCCAAGAGAAGCTCCAGTTCACCGTTTCGGGATGCTATGCCTGTTGGGAGG-------GTCTCTCCTTTGCTGTTTGACAATAGATGTAGGAATGACTCGGGAGCT---GC--AATTCGTTCATATCCAGAATAATCAATCCTTCCAGTCTCTAACAGTAGGCTTTATTTTCCCGTGTTGTCAGATGCCTCCTTTTGTAGATAGGTGTTCCGTTTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17024233 1124 - 229590362 ATCAGATAATGCCTTCC---GTTGTTGTCA------AATACTActtctctcatcttttcattccttctcttcccttttccccccttccccgtgcctttcttctATATCCTTGGCATCTG-TTTTGGAGACTCCACGGAATGATGCCTGGATACTGAACCTGCTTTCCTTCCTTCCCTGGTTCTCCCAGGAAAATCCTACACCATGATCGGAAAGGACGATTCCATGCAGAACCTGGGCATCATTCCCTGTGCCATCTCTTGGCTCTTCAAGCTCATAAACGAACGCAAGGAAAAGACCGGCGCCCGTTTCTCAGTCCGGGTTTCGGCCGTGGAGGTGTGGGGCAAGGAGGAGAACCTGCGGGACCTGCTGTCGGAGGTGGCCACGGGCAGCCTGCAGGACGGCCAGTCCCCAGGCGTGTACCTCTGCGAGGACCCCATCTGCGGCACGCAGGTGATT----GCTTCTGAAGCCCGGCTCGCCCCAAGGTGGCTCCCTCCCCACCTCAGAGGCTGGG-----GCACCTCAACTCGTGAATCACTCAGCCTGTAAACTCGG-GG--GCTTACAGGTGTTTACTTTAAAGTG-GACTAGAGCTTTACGGCCTGCAGCTGCGGGGCCATCTGCTTGTCCAATCTAAATATTTGTACCTTGACTCTAATTGACAATGAGCAGGAGCCTCAATTGTTGTAGCATTTGGGGGAGAAATGGAATTCACTTTCTTTATGCCCCTTTC--A-------AAAAAAAAAAGT-ACAATCTTCCTTTTGTTT-AACAACAAACCGAAATATTTACTGCTCTGCACAAATAGCTAGAGCCATTACGGGGGCTGTTTATGACTCTGTAAACTGTGTGTCGGGCACTGG-TTTACAGCCGGACTAGCAGTGCTGCAGGAAAAACTAATCACCACTTTCTAATTAGAACCATGATATAATTGCTAGAACTATGGAAGCCGAGAGAAGCTCCAGTTCGCCGTTTCAGGATGCTATGCCTGTTGGGAGG-------GTCTCTCCTTTGCTGTTTGACAATAGATGTAGGAATGACTTGGAAGCT---GC--AA----TTCATATCCAGAATAATCAATCCTTCCAGTCTCTAACAGTAGGCTTTATTTTCCCGTGTTATCAGATGCCTCCTTTTGTAGATAGGTGTTCCGTTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223788097 1124 - 227556264 ATCAGATAATGCCTTCC---GTTGTTGTCA------AATACTACTTCTCTCATCTTTTCATTCCTTCTCTTCCCTTTTCCCCCCTTCCCCGTGCCTTTCTTCTATATCCTTGGCATCTG-TTTTGGAGACTCCACGGAATGATGCCTGGATACTGAACCTGCTTTCCTTCCTTCCCTGGTTCTCCCAGGAAAATCCTACACCATGATCGGAAAGGACGATTCCATGCAGAACCTGGGCATCATTCCCTGTGCCATCTCTTGGCTCTTCAAGCTCATAAACGAACGCAAGGAAAAGACCGGCGCCCGTTTCTCAGTCCGGGTTTCGGCCGTGGAGGTGTGGGGCAAGGAGGAGAACCTGCGGGACCTGCTGTCGGAGGTGGCCACGGGCAGCCTGCAGGACGGCCAGTCCCCAGGCGTGTACCTCTGCGAGGACCCCATCTGCGGCACGCAGGTGATT----GCTTCTGAAGCCTGGCTCGCCCCAAGGTGGCTCCCTCCCCACCTCAGAGGCTGGG-----GCACCTCAACTCGTGAATCACTCAGCCTGTAGACTCGG-GG--GCTTACAGGTGTTTACTTTAAAGTG-GACTAGAGCTTTACGGCCTGCAGCTGCGGGGCCATCTGCTTGTCCAATCTAAATATTTGTACCTTGACTCTAATTGACAATGAGCAGGAACCTCAATTGTTGTAGCATTTGGGGGAGAAATGGAATTCACTTTCTTTATGCCCCTTTC--A-------AAAAAAAAAAGT-ACAATCTTCCTTTTGTTT-AACAACAAACCGAAATATTTACTGCTCTTCACAAATAGCTAGAGCCATTACGGGGGCTGTTTATGACTCTGTAAACTGTGTGTCGGGCACTGG-TTTACAGCCGGACTAGCAGTGCTGCAGGAAAAACTAATCACCACTTTCTAATTAGAACCATGATATAATTGCTAGAACTATGGAAGCCGAGAGAAGCTCCAGTTCGCCGTTTCAGGATGCTATGCCTGTTGGGAGG-------GTCTCTCCTTTGCTGTTTGACAATAGATGTAGGAATGACTTGGAAGCT---GC--AA----TTCATATCCAGAATAATCAATCCTTCCAGTCTCTAACAGTAGGCTTTATTTTCCCGTGTTATCAGATGCCTCCTTTTGTAGATAGGTGTTCCGTTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16838332 1123 - 220367699 ATCAGATAATGCCTTTC---GTTGTTGTCA------AATACTActtctctcatcttttcattccttctcttcccttttccccccttccccgtgcctttcttctATATCCTTGGCATCTA-TTTTGGAGACTCCACGGAATGATGCCTGGATACTGaacctgctttccttccttccctggtTCTCCCAGGAAAATCCTACACCATGATCGGAAAGGACGATTCCATGCAGAACCTGGGCATCATTCCCTGTGCCATCTCTTGGCTCTTCAAGCTCATAAACGAACGCAAGGAAAAGACCGGCGCCCGTTTCTCAGTCCGGGTTTCGGCCGTGGAGgtgtgggggaaggaggagaaccTGCGGGACCTGCTGTCGGAGGTGGCCACGGGCAGCCTGCAGGACGGCCAGTCCCCAGGCGTGTACCTCTGCGAGGACCCCATCTGCGGCACGCAGGTGATT----GCTTCTGAAGCCTGGCTCGCCCCAAGGTGGCTCCCTCCCCACCTCAGAGGCTGGG-----GCACCTCAACTCGTGAATCACTCAGCCTGTAAACTCGG-GG--GCTTACAGGTGTTTACTTTAAAGTG-GACTAGAGCTTTACGGCCTGCAGCTGTGGGGCCATCTGCTTGTCCAATCTAAATATTTGTACCTTGACTCTAATTGACAATGAGCAGGAACCTCAATTGTTGTAGCATTTGGGGGAGAAATGGAATTCACTTTCTTTATgcccctttc----------aaaaaaaaaagt-acaatctTCCTTTTGTTT-AACAACAAACCGAAATATTTACTGCTCTGCACAAATAGCTAGAGCCATTACGGGGGCTGTTTATGACTCTGTAAACTGTGTGTCGGGCACTGG-TTTACAGCCGGACTAGCAGTGCTGCAGGAAAAACTAATCACCACTTTCTAGTTAGAACCATGATCTAATTGCTAGAACTATGGAAGCCGAGAGAAGCTCCAGTTCGCCATTTCAGGATGCTATGCCTGTTGGGAGG-------GTCTCTCCTTTGCTGTTTGACAATAGATGTAGGAATGACTCAGAAGCT---GC--AA----TTCATATCCAGAATAATCAATCCTTCCAGTCTCTAACAGTAGGCTTTATTTTCCCGTGTTATCAGATGCCTCCTTTTGTAGATAGGTGTTCCGTTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82638039 1118 + 85787240 ATCAGATAATGCCTTCC---GTTGTTGTCA------AATACTACTTCTCTCA---TTTCATTCCTTCTCTTCCCTTTTTCCCCCTTCCCCATGCCTTTCTTCTATATCCTTGGCATCTG-TTTTGGAGACTCCACGGAATGATGCCTGGATACTGAATCTGCTTTCTTTCCTTCCCTGGTTCTCCCAGGAAAATCCTACACCATGATTGGAAAGGACGATTCCATGCAGAACCTGGGCATCATACCCTGTGCCATCTCTTGGCTCTTCAAGCTCATAAACGAACGCAAGGAAAAGACCGGCGCCCGTTTCTCAGTCCGGGTTTCGGCCGTGGAGGTGTGGGGGAAGGAGGAGAACCTGCGGGACCTGCTGTCGGAGGTGGCCACGGGCAGCCTGCAGGATGGCCAGTCCCCAGGCGTGTACCTCTGCGAGGACCCCATCTGCGGCACGCAGGTGATT----GCTTCTGAAGCCTGGCTCGCCCCAAGGTGGCTCCCTCCCCACCTCAGAGGCTGGG-----GCACCTCAACTCGTGAATCACTCAGCCTGTAAACTCGG-GG--GCTTACAGGTGTTTACTTTAAAGTG-GACTGGAGCTTTACGGCCTGCAGCTGCGGGGCCATCTGCTTGCCCAATCTAAATATTTGTACCTTGACTCTAATTGACAATGAGCAGGAGCCTCAATTGTTGTAGCATTTGGGGGAGAAATGGAATTCACTTTCTTTATGCCCCTTTC------------AAAAAAAAGT-ACAATCTTTCTTTTGTTT-AACAACAAACCGAAATATTTACTGCTCTGCACAAATAGCTAGAGTCATTACGGGGGCTGTTTATGACTTTATAAACTGTGTTTCGGGCACCGG-TTTACAGCCGGACTAGCAGTGCTGCGGGAAAAACTAATAACCACTTTCTAATTAGAACCATGATATAATTGCTAGAACTATGGAAGCCGAGAGAAGCTCCAGTTCGCCGTTTCAGGATGCTATGCCTGTTGGGAGG-------GTCTCTCCTTTGCTGTTTGACAATAGATGTGGGAATGACTCGGAAGCT---GC--AA----TTCATATCCAGAATAATCAATCCTTCCAGTCTCTAACAGTAGGCTTTATTTTCCCATGTTATCAGATGCCTCCTTTTGTAGATAGGTGTTCCGTTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14348184 1084 - 49578535 GCCAGAAAACGCC--------TTGTTGTCA------GATGGTATTTCTCTCCTCTTTTCGTTCCT----------TTGCCCCACTTGCCCATGCCTTTCTTCTACATCCGTGGCATCTA-TTTT-GAGCCTCTGTGGAATGATGCATGAACACTCAAACTGCTTTTCTTCCTCCCCTGGCTCTCCCAGGAAAATCCTATACCATGATTGGGAAGGACGATTCCATGCAGGACCTGGGCATCATCCCCTGTGCCATCTCTTGGCTCTTCAAGCTCATAAACGAACGGAAGGAAAAGACCGGCGCCCGTTTCTCGGTCCGGATCTCTGCCGTGGAAGTGCGGGGGAAGGAGGAGAACCTGCGGGACCTGCTGTCGGAGGTGGCCACGGGCAGCCTGCAGGACGGCCAGTCCCCGGGCGTGTACCTTTGTGAGGACCCCATCTGCGGCACGCAGGTGAGT----------GAAGCCTGG------------TAGCCTCTTCCCCACCTCAGAGGCTGGG-----CCAGCTCGACT-GTGAATCACTCGGCCTGTAAACTGGG-AG--GCTTATGGGTGTTTACTTTAAAGTG-GCCTGGAACTGTATAGCCTGCAGCTGCCGGGCCGTCTGCTTGGCCAGTCTAAATATTTGTACCTTGACTTTAATTGACAATGAGCAGGAACCACAATTGTTATAGCATTTCAGAGAGAAATTGAATTCACTTCCTCTATGCCCCTTTC--AAAA---GAAAAAAAAAAGG-ACAATCTTTCTTTTGTTT-AACAACAAACCAAAATATTTACTGCTCTTCACCAATAGCTACAGCCATTACCGGGGCTGTTTATGACTCTATAAACTGTGTTTCTGGCACTGG-TTTACAGCTGGATTAGCAGTGCTACAGGAAAAACTAATAACCACTTTCTAATTAGAACCATGATATAGTTGCTGGAGCTGTGGAAGCCAAGAGA------AGTTCGCAGTTTGAGGATGCTGTGTC--TTGTGAGG-------GTCTCTCCTTTGCTGTTTGACAATAGATGTAGGACTGACTCGGGAGCC---AC--AG----TTCATTTCCAGAATAATCAGTCCTTACTGTCTCTAGCAGTGGGCCTTAGTTTCCCGTTTTATCAGATGCCTCCTTTTTTAGA-AGGTGTTCTGTTTG i calJac3.chr19 C 0 I 298 s mm10.chr1 178870447 1090 + 195471971 ATAAGGAAATGTT-------------------------TGCTACTTTTCCGGTCTTTTCATTCTTTAGCTTGCCCTCGTCCCAC-TCCCCACACCTTCCTCCTGTATCCTCAGCATCTGCTTTTTGAAGCTCTAATGAGTGATGTCTGTGTG-------------TCTCTCTTCCCCTGCTCCCACAGGGAAATCCTACACCATGATCGGAAGGGACGACTCTATGCAGAACCTGGGCATTATTCCATGTGCTATTTCTTGGCTGTTCAAGCTTATCAATGAGCGCAAAGAGAAGACGGGGGCCCGATTCTCAGTCCGCATCTCAGCCGTTGAGGTGTGGGGAAAAGAGGAGAACCTTCGAGACCTGTTGTCTGAGGTGGCCACGGGCAGCCTACAGGACGGGCAGTCCCCAGGCGTGTACCTCTGTGAAGACCCCATCTGTGGCACACAGGTGACTGGCTGCTTTGGAAGTTTGACTTAGCTGGGGGTGACT-CCTCTCTACTTCAGAGGATGGG-----GCATCTCAGACCTGGAATCATTTACCATGTAAACTGGG-AAATGCTTATGAGTGTTTACTTTAAAGTG-GACGGGAACTTTATGGCCTGCAGCTGTGGGGCCATCTGCTCACCCAACCTAAATATTTGTACCTTGAATCTAATTGACAATGAGCAGGAACTGCAATTGTCATAGCATTTTGGGG-GAGATTGAATCCACTTTCTTGATGCCTCTTTC--AAGAATGAAAAAAAAAAAGT-ACAGTCTTTCTTTTGTTT-AACAACAAACTGAAATATTTACTGCTGTGCACAAATAGCTGCAGCCATTACAGGGGCTGTTTATGGCTCTATAAACTGTGTTTCTGGCACTGC-TTTACAGCCGGATTAGCAGTGCTGTGGGAAAAACTAGTAACCGATTTCTAATTAGAACCGTGATAGAATTGCTAGAACTATGGAAGCTGAGAGAAGTTCTTATTTGCCTTTTCAGGAAGTCAGGCCTTTTAAGGGGGCAGGGAGTCTTCCCTTTGCTGTTTAACA-------TAGGGATCTCTCTGTGGCTCTCCC--GG----TTCATATCCGGAA-AGTCCGTTCTGCCAGTTTCCTGCAGTATGC------TTCCCA-------AAACGCCCCATCT--TAGATAGGAGTC---TCTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36450854 1050 + 80974532 ACTAGGAAATGCCCTTTGCGGTTGTTGTCATCGATGCCTACTACCTCCCTCACCTTTCC---------CTTTCCTTCCTTCCCAACCCCCAAGCCTCCC--------------CATGGG----------------------------GGACACTCACACTGTGTTCCTCCCTTGTCTCGCTCCCCCAGGGAAATCCTACACCATGATCGGAAAGGACGATTCCATGCAGAACCTTGGCATCATCCCCTGTGCTATCTCTTGGCTCTTCAAGCTGATAAATGAACGCAAGGAAAAGACGGGAGCCCGGTTCTCGGTGCGGATCTCAGCGGTGGAAGTGTGGGGCAAAGAAGAGAACCTCCGGGACCTGCTGGCCGAGGTGGCCACGGGCAGCCTGCAGGACGGCCAGTCCCCGGGCGTGTACCTGTGCGAGGACCCCATCTGTGGCACGCAGGTGAGC--------------------------------AGCTCCCCGCTGCTAGCGGGGGGGGGGGGGGTGCGCTGCACCCCATGGTTCCGGCCACGTGTAAACAGGGCAG--GCTTGCGAGTGTTTACTTTAGGGGGAGGCGGGAACTTTATGGCTTGCAGCTGCAGGGCCATCTGCTCACCCAACCTAAATATTTGTACCTTGAATCTAATTGACAATGAGCAGGAACCACGATTGTTGCAGCATTTGTGGG-GAAATTGAATTCACTTTCCTTACGCCCCTTTC-GA-------AAAAAAGAAAGT-ACAGTCTTTCTTTTGTTTAAACAACAAGCCGAAATATTTACTGCTCTGCACAAAGAGGTCCAGCCATTACCAGGGCTGTTTATGGCTCTATAAACTGTGTTTCTGGCACTGGTTTTACAGCCGGATTAGTAGTGCTGTAGGAAAAACTAATAACCACTTTCTAATTAGAACCATGATATAATTGCTGGAGCTGTGGAAGCCAAGAGAAGCTCCAGTCTACCTTTGCAGGATATGATGCCTGTTCCGTCA-------GTCTGTCTCTCTCTGGCTGCCAATAGATGGAGGAAGGACTCC-CAGCT---CCCTGG----TTCATATCCAGGAGAATTAGTTCTTTCAGTCTC---CAGCAGGCCTTATTT--CCAATTTGTT----------TTTTTCAGATAAGTGTTCATTTTG i canFam3.chr7 I 23 C 0 a score=503136.000000 s hg38.chr1_KI270759v1_alt 304516 140 + 425601 ATAAGTACCTGCCTCTTCCCAACTGGGATT-GTTTGCACAGGTGAGGATACCTCCCGTGGCCTGTTATACTCAT-TACTCAAA-CCTGACCATGCTCTTCCCCTGCTTAAAGCACCTCAGATCCCTCCA--TTTC---CCT---GAGTCCT s panTro4.chr1 225061361 140 + 228333871 ATAAGTACCTGCCTCTTCCCAACTGGGATT-GTTTGCACAGGTGAGGATACCTCCCGTGGCCTGTTATACTCAT-TACTCAAA-CCTGACCATGCTCTTCCCCTGCTTAAAGCACCTCAGATCCCTCCA--TTTC---CCT---GAGTCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226430242 140 - 229942017 ATAAGTACCTGCCTCTTCCCAACTGGGATT-CTTTGCACAGGTGAGGGTACCTCCCGTGGCCTGTTACACTCGT-TACTCAAA-CCTGACCATGCTCTTCCCCTGCTTAAAGCACCTCAGATCCTTCCA--TTTC---CCT---GAGTCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140314233 139 - 143122389 ATAAGTACCTGCCTCTTCCCAACTGGGATT-GTTTGCACAGGTGA-GATACCTCCCGTGGCCTGTTACACTCGT-TACTCAAA-CCTGACTGTGCTCTTCCCCTGCTTAAAGCACCTCAGATCCTTCCA--TTTC---CCT---GAGTCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17025357 140 - 229590362 ATAAGTACCTGCCTCTTTCCAACTGGGATT-GTTTGCACAGGTGAGGATCCCTCCCTTGGCCTGTTATACTCGT-CACTCAAA-CCTGACCATGCTCTGCCCCTGCTTAAAGCACCTCAGATCCTTTCA--TTTC---CCT---GAGTCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223789221 140 - 227556264 ATAAGTACCTGCCTCTTTCCAACTGGGATT-GTTTGCACAGGTGAGGATCCCTCCCTTGGCCTGTTATACTCGT-CACTCAAA-CCTGACCATGCTCTGCCCCTGCTTAAAGCACCTCAGATCCTTCCA--TTTC---CCT---GAGTCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16839455 140 - 220367699 ATAAGTACCTGCCTCTTTCCAACTGGGATT-GTTTGCACAGGTGAGGATCCCTCCCTTGGCCTGTTATACTCAT-CACTCAAA-CCTGACCATGCTCTGCCCCTGCTTAAAGCACCTCAGATCCTTCCA--TTTC---CCT---GAGTCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82639157 140 + 85787240 GTAAGTACCTGCCTCTTTCCAACTGGGATT-GTTTGCACAGGTGAGGACACCTCCCTTAGCCTGTTATACTCAT-TACTCAAA-CCTGACCATGCTCTGCCCCTGCTTAAAGCACCTCAGATCCTTCCA--TTTC---CCT---GAGTCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14349566 141 - 49578535 ATAAGTACCTGCCTCTTCCCAACAAGGACT-GTTTGCAGAGATGAAGATACCTCCTGTGGCCTGTCATACTCCTCTGCTCAAA-CGTGACCATGCTCTTCCCCTGCTTAAAACCCCTC--ATCCTTCTGTCTTCC---TCT---GAGTCCT i calJac3.chr19 I 298 C 0 s mm10.chr1 178871537 142 + 195471971 ATAAATACCTGGCTCCTACCAGCTAGG-TC-ATTTCTGTGAATGAGGATGCCCCAGAAACAATATTATACCCAA-CTCTCAAAGCCTGACCCTGCTTAGCCTCTGATCAGGGAACCT-GGACCCTTCCA--GTGT---CCTTTAGAAATCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36451904 138 + 80974532 ATGAGTTCCTGTGTCTTCCCAGGTGGGACTGGTTTTCACAGGCGAGGACACCTC-------CTGTTATACCCATCTACTCACA-CCTGGCTGTGTTCTTCCCCTGCTCAGAGCACCTCAGATCCTTCCG--TTTCTGTTCT---GAATCCC i canFam3.chr7 C 0 I 500 a score=453879.000000 s hg38.chr1_KI270759v1_alt 304656 132 + 425601 ctttcgtctgcatct--gtcacctcgaggacttgtttaaacactgatcgctgggca-ccccccc----agagtttccaattcagt---aggtctagagtagagctccaaaatgtgc----atttccaacaagttcccatgagatgc s panTro4.chr1 225061501 132 + 228333871 ctttcgtctgcatct--gtcacctcgaggacttgtttaaacactgatcgctgggca-ccccccc----agagtttccacttcagt---aggtctagagtagagctccaaaatgtgc----atttccaacaagttcccatgagatga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226430382 133 - 229942017 ctttcgtctgcatca--gtcaccttgaggatttgtttaaacactgatcgctgggcattcccccc----agagtttccaattcagt---aggtctagagtagagctccaaaatgtgc----atttccaacaagttcccatgagatgc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140314372 133 - 143122389 ctttcgtctgcatca--gtcacctcgaggacttgtttaaacactgatcgctgggcactcccccc----agggtttccaattcagt---agatctagagtagagctccaaaatgtgc----atttccagcaagttccaatgagatgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17025497 137 - 229590362 ctttcgtctgtatca--gtcacctcgaggacttgtttaaacactgattgctgggtactcccccccccgccagtttccaattcagt---aggtctagagcagagctccaaaatgtgc----attttcaacaagttcccatgaggtgc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223789361 135 - 227556264 ctttcgtctgtatca--gtcacctcgaggacttgtttaaacactgattgctgggtactccccccac--ccagtttccaattcagt---aggtctagcgcagagctccaaaatgtgc----attttcaacaagttcccatgaggtgc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16839595 134 - 220367699 CTTTCGTCTGCATCA--GTCACCTCGAGGACTTGTTTAAACACTGATTGCTGGGTACTccccccc---AGAGTTTCCAATTCAGT---AGGTCTAGAGCAGAGCTCCAAAATGTGC----ATTTTCAACAAGTTCCCATGAGGTGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82639297 136 + 85787240 ctttcgtctgcatca--gtcaccttgaggacttgtttaaacactgattgctgggtactccccccccc-agagtttccaattcagt---aggtctagagcagagctccaaaatgtgc----attttcaacaagttcccatgaggtgc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14349707 135 - 49578535 ctttcgtctgcatca--gtcacc-agaggactagtttaaaccctgattgctggacactaccccc----acagctcccaattccat---agg-ctggagtagagctccaaagtgtgcatggatttctaaccagttcccgtgagatgc i calJac3.chr19 C 0 C 0 s mm10.chr1 178871679 136 + 195471971 ctgtagtgtgcatcagcgttgtctggaggtcttgttgaaa--ttgagcactgggcttctcccta----agagtttctgactccacttgaggtaaagctcactgccctgcaatgtgc----attcctaacaagttcccataggatcc i mm10.chr1 C 0 I 63 s canFam3.chr7 36452542 132 + 80974532 ctgtagtcttcagca--gtcacttggaggacttg-gaaaacacagcttgccgggctctacctcg----agaatttctgattcggt---aggcctggggtagatccccagaatgtgc----atttctaaccagttcccatgtgacac i canFam3.chr7 I 500 C 0 a score=182529.000000 s hg38.chr1_KI270759v1_alt 304788 58 + 425601 tcatgctgccggtccagggatcaca-gttggaaatcactgTTCTGAGGCATCAAATGTG s panTro4.chr1 225061633 58 + 228333871 tcatgctgccggtccagggatcaca-gttggaaatcactgTTCTGAGGCATCAAATGTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226430515 59 - 229942017 tcatgctgccggtccagggatcacatgttggaaatcactgTTCTGAGGCATCAAATGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140314505 59 - 143122389 tcatgctgccggtccagggatcacatgttggaaaccactgTTCTGAGACATAAAATGTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17025634 59 - 229590362 tcgtgctgcccgtccagggaccacatgttggaaaccactgTTCTGAGGCATAAAATGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223789496 59 - 227556264 tcgtgctgcccgtccagggaccacatgttggaaaccactgTTCTGAGGCATAAAATGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16839729 59 - 220367699 TCGTGCTGCCCGTCCAGGGACCACATGTTGGAAACCACTGTTCTGAGGCATAAAATGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82639433 59 + 85787240 tcgtgctgccggtccagggatcacatgttggaaaccactgTTCTGAGGCATAAAATGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14349842 59 - 49578535 tggtggtgctggtccggggctcacatgttcgaaagcactgCTTTGAGGCGTGAAATGTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36452674 53 + 80974532 tgatgctgttggttcagggaccacacttggagaacctctCTTCTGAAGCATCA------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178871815 63 + 195471971 I a score=960088.000000 s hg38.chr1_KI270759v1_alt 304846 328 + 425601 CAGAG---ACAGTATCTACA---------------------------------CAGTGTCTGTGATGCAAT----CAGTAGGACTCGACCCACTGCTCCTGTTCCAGGCATTTTCTAGACATTCAAATATGCTTTCACCCCCATTCATTTTT----------------------------------------------------------------------------------------------------------------AGAACTTCATTGATGAAATTCCACTAAGGGGTGAAAAGTCTGGTTAAATGAAGGCTAAGAAAAAGAAGAAAAGACCAATATTCCCTTTA-------ATTCTTGTTGAAAAATCTTTTAAATTCTTTGGTTTATTTTT---CCATAGCGAG-ACAAAATTTTGAACACAAAAGAATCTCTCTTTGAAGTCTGAGGATTTTGA----TGGCCTCAGGTT----------------CTAAATATTGGCTC s panTro4.chr1 225061691 328 + 228333871 CAGAG---ACAGTATCTACA---------------------------------CAGTGTCTGTGATGCAAT----CAGTAGGACCCGACCCACTGCTCCTGTTCCAGGCATTTTCTAGACATTCAAATATGCTTTCACCCCCATTCGTTTTT----------------------------------------------------------------------------------------------------------------AGAACTTCATTGATGAAGTTCCACTAAGGGGTGAAAAATCTGGTTAAATGAAGGCTAAGAAAAAGAAGAAAAGACCAATATTCCCTTTA-------ATTCTTGTTGAAAAATCTTTTAAATTCTTTGGTTTATTTTT---CCATAGCGAG-ACAAAATTGTGAACACAAAAGAATCTCTCTTTGAAGTCTGAGGATTTTGA----TGGCCTCAGGTT----------------CTAAATATTGGCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226430574 331 - 229942017 CAGAGACCACAGTATCTACA---------------------------------CAGTGTCTGTGATGCAAT----CAGTAGGACCCGACCCACTGCTCCTGTTCCAGGCATTTTCTAGACATTCAAATATGCTTTCACCCCCATTCGCTTTT----------------------------------------------------------------------------------------------------------------AGAACTTCATTGATGAAGTTCCACTAAGGGGTGAAAAATCTGGTTAAATGAAGGCTAAGAAAAAGAGGAAAAGACCAATATTCTCTTTA-------ATTCTTGTTGAAAAATCTTTTAAATTCTTTGGTTTATTTTT---CCATAGCGAG-ACAAAATTGTGAACACAAAAGAATCTCTCTTTGAAGTTTGAGGATTTTGA----TGGCCTCAGGTT----------------CTAAATATTGGCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140314564 311 - 143122389 CAGAG---ACAGTATCTACA---------------------------------CAGTGTCTGTGATGCAAT----CAGTAGGACCCGACCCACTGCTCCTGTTCCAGGCATTTTCTAGACATTCAAATATGCTTTCACCCCCATTTGCTTTT----------------------------------------------------------------------------------------------------------------AGAACTTCATTGATGAAGTTCCACTAAGGGGTGG-----------AAATGAAGGCT------AAGAGGAAAAGGCCAATATTCCCTTTA-------ACTCTTGTTGAAAAATCTTTTAAATTCTTTGGTTTATTTTT---CCATAGCGAG-ACAAAATTGTGAACACAAAAGAATCTCTCTTTGAAGTTTGAGGATTTTGA----TGGCCTCAGGTT----------------CTAAATATTGGCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17025693 322 - 229590362 CAGAG---ACAGTATCTACA---------------------------------CAGTGTCTGTGATGGAAT----CAGGAGGACGCGACCCACTGCTCCTGTTCCAGGCATCTTCTCGACATTCAAATATGCTTT------CATTTGCTTTT----------------------------------------------------------------------------------------------------------------AGAACTTCATTGATGAAGTTCCACTAAGGGGTGAAAAATCTGGTTAAATGAAGGCTAAGCAAAAGAGGAAAAGACCAATGTTCACTTTA-------ACTCCTGTTGAAAAATCTTTTAAATTCTTTGGTTTATTTTT---CCATAGCGAG-ACAAAATTGCTAACACAGAAGAATCTCTCTTTGAAGTTTGAGGATTTTGA----TGGCCTCACGTT----------------CTAAATATTGGCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223789555 322 - 227556264 CAGAG---ACAGTATCTACA---------------------------------CAGTGTCTGTGATGGAAT----CAGGAGGACGCGACCCACTGCTCCTGTTCCAGGCATCTTCTCGACATTCAAATATGCTTT------CATTTGCTTTT----------------------------------------------------------------------------------------------------------------AGAACTTCATTGATGAAGTTCCACTAAGGGGTGAAAAATCTGGTTAAATGAAGGCTAAGCAAAAGAGGAAAAGACCAATGTTCACTTTA-------ACTCCTGTTGAAAAATCTTTTAAATTCTTTGGTTTATTTTT---CCATAGCGAG-ACAAAATTGCTAACACAGAAGAATCTCTCTTTGAAGTTTGAGGATTTTGA----TGGCCTCACGTT----------------CTAAATATTGGCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16839788 322 - 220367699 CAGAG---ACAGTATCTACA---------------------------------CAGTGTCTGTGATGGAAT----CAGGAGGACGCGACCCACTGCTCCTGTTCCAGGCATCTTCTCGACATTCAAATATGCTTT------CATTCGCTTTT----------------------------------------------------------------------------------------------------------------AGAACTTCATTGATGAAGTTCCACTAAGGGGTGAAAAATCTGGTTAAATGAAGGCtaagcaaaagaggaaaagacCAATGTTCACTTTA-------ACTCCTattgaaaaatcttttaaattctttggtttattttt---ccatAGCGAG-ACAAAATTGCTAACACAGAAGAATCTCTCTTTGAAGTTTGAGGATTTTGA----TGGCCTCACGTT----------------CTAAATATTGGCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82639492 328 + 85787240 CGGAG---ACAGTATCTACA---------------------------------CAGTGTCTGTGATGCAAT----CAGGAGGACGCGACCCGCTGCTCCTGTTCCAGGCATTTTCTCGACATTCAAATATGCTTTCACCCCCATTCGCTTTT----------------------------------------------------------------------------------------------------------------AGAACTTCATTGATGAAGTTCCACTAAGGGGTGAAAAATCTGGTTAAATGAAGGCTAAGCAAAAGAGGAAAAGACTAATGTTCGCTTTA-------ACTCCTGTTGAAAAATCTTTTAAATTCTTTGGTTTATTTTT---CCATAGCGAG-ACAAAATTGCTAACACAGAAGAATCTCTCTTTGAAGTTTGAGGATTTTGA----TGGCCTCAGGTT----------------CTAAATATTGGCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14349901 362 - 49578535 CTGAG---ACGGCATCTACAGGGTGCCCGCGATGCCGTCCATCAGCATCTGTGCAGTGCCCGCGATGCCATCCACCAGCAGGGCCCGACCCAGCGTTCCTGCTCCGGGCATTTCCTAGGCATTGAAATCTGCTTTCACCTCTGTT-GATTTT----------------------------------------------------------------------------------------------------------------AGAGCTTCATTGATGAAGGTCCACTTAGGGCTGAAAGATCTGGTTACATGAAGACAAAG-AAAAGAGGGAAAGA-TGATGCTGCCTTCA-------ATTCTCGTTGAAAAATCTTCGAAATGCTTTGGTTTATGTTT---CCATAGCGAG-TCAAAATTGTGAACACAAAAGAATCTCTCTTTGAAGTTTGAGGGTTTTGA----TGGTCTCGGGTT----------------CTAAATGTTAGCTC i calJac3.chr19 C 0 I 1439 s mm10.chr1 178871878 334 + 195471971 CGGAA---GCAGTAGGTGCA---------------------------------TAGACTCCATGACGGAAG----CAGAAGCACCCGGGCCACTGGTCCTTCTGCAAAC---TTGGCAGGGCTCAAACATGTGTGAACTTGGGTTCA-TTTT----------------------------------------------------------------------------------------------------------------GGAGCCT-ACTACCAAAGGTTCTCTTAAG---TAAAGATCTGTTT--CCCAACGGTAAATAAGGCAAAGAAAG--TAATGGCCTCTTGA-------AACTCTTCTTTAAAATATGTATAATTCTGCAGTTTAAGTCT----GATAGTAAG-TTCAAAAGGACACATCCGATAAAACTCCCTTCAAAGTTCCAGGATTTTAAA-GCTGGTGTTAGTTTGCAAATCCTGCCTGCACCAAATATTGCTTC i mm10.chr1 I 63 C 0 s canFam3.chr7 36452727 419 + 80974532 ---------CAGCACCTGCT---------------------------------------------TGGCAT----CA-------CCTGCCTGCTGTTCCCTTCCCAAGAATTACCTGGATGTTCAGATGCCCTGGAGCCTCCATTCACTTTTATTTTTGtttaatttaaattttgttagttaacatacagtgcaatgctggttcattggagtcagttcagtaggattcagtgattcatcacatacaactccATTCACTTTTATAAAGACTCTGCTGGTGAAGTCCCACGTAGG--CAAAGGACCTGGTTAACTGAAGGCT------TGGAAGAACAGATCAACAGCCTTTTTATTTAACTCTTCTTATTGAAAAATCACGAAAAAACATTAGCTTATTTTTCTACCATAGTAAGTACAGAACAGTGAACACAACAG--TCTGTCTTTGAAGTCTGAGGATTTTGAAGGAAGGTCCCAGGTT----------------CCAAA-ATCAGCTC i canFam3.chr7 C 0 C 0 a score=1129777.000000 s hg38.chr1_KI270759v1_alt 305174 350 + 425601 TT-AC----AGTTCAAAATTATTTGTATAGTTA------G-AGTAGAAAATTGTCAGAATTTGTACCAACCTTAAGACATGTACTGCAAATTAGTTCTTTGAA----------CAAATCAGAAACA-------TGAGTTGCCTTTTCTCCCCAAAAAGAGGAGTGCT-G-------------------------------------------GTTCAATTCTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGATCGTTGTGATTCAGGTT-TAAAATAATTGCCAAGTATTTTCATAAGATTCAGACGCATTACCCTGTGTGCTTTCTTTAATCAATTAATGAGTATGCCGGGAGCATGGATTCAGGAACTAAAGGT--AAATAGG----------TATCTCCTAAATTTAGATGAGAC-ATTCAAGTATCGTGAGTGTTTGAGGGTGCCCTTTACAC s panTro4.chr1 225062019 350 + 228333871 TT-AC----AGTTCAAAATTATTTGTATAGTTA------G-AGTAGAAAATTGTCAGAATTTGTACCAACTTTAAGACATGTACTGCAAATTAGTTCTTTGAA----------CAAATCAGAAACG-------TGAGTTGCCTTTTCTCCCCAAAAATAGGAGTGCT-G-------------------------------------------GTTCAGTTCTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGATCGTTGTGATTCAGGTT-TAAAATAATTGCCAAGTGTTTTCATAAGATTCAGACACATTACCCCGTGTGCTTTCTTTCATCAATTAATGAGTATGCCGGGAGCATGGATTCAGGAACTAAAGGT--AAATAGG----------TATCTCCTAAATTTAGATGAGAC-ATTCAAGTATCGTGAGTGTTTGAGGGTGCCCTTTACAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226430905 352 - 229942017 TTAAC----GGTTCAAAATTATTTGCATAGTTA------G-AGTAGAAAATTGTCAGAATTTGTACCAACCTTAAGACATGTACTGCGAATTAGTTCTTTGAA----------CAAATCCGAAACA-------TGAGTTTCCTTTTCGCCCCAAAAAGAGGAGTGCTCG-------------------------------------------GTTAAATTCTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGATTGTTGTAATTCAGGTT-TAAAATAATTGCCAAGTACTTTCATAAGATTTAGACGCATTACCCTGTGTGCTTTCTTTAATCAATTAATGAGTATGCCAGGAGCATGGATTCAGGAACTAAAGGT--AAATAGA----------TATCTCCTAAATTTAGATGAGAC-ATTCAAGCATCGTGAGTGTTTGAGGGTGCCTTTTACAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140314875 350 - 143122389 TT-AC----AGTTCAAAATTATTTGTATAGTCA------G-AGTAGAAAATTGTCAGAATTTGTACCAACGTTAAGACCTGTACTGCGAATTAGTTCTTTGAA----------CAAATCAGAAACA-------TGAGTTACCTTTTCTCCCCAAAAAGAGGAGTGCT-G-------------------------------------------GTTAAATGCCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGATTGTTGTGATTCAGGTT-TAAAATAATTGCCAAGTATTTTCATAAGATTTAGACGCATCACCCTCTATGCTTTCTTTAATCAATTAATGAGTATGCCAGGAGCATGGATTCAGGAACTAAAGGT--AAATAGA----------TATCCCCTGAATTTAGATGAGAC-ATTCGAGTATCGTGAGTGTTTGAGGGTGCCTTTTACAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17026015 352 - 229590362 TT-AC----AGTTCAAAATTATTTGTATAGTTA------G-AGTAGAAAATTGTCAGAATTTGTACCAACCTTAAGACATGTATTGCGAATTTGTTCTTTGAA----------CAAATCAGAAACG-------TGAGTTTCCTTTTCTCTCCAAAAAGAGGAGTGCT-G-------------------------------------------GTTAAATTCTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGATTGTTGTGATTCAGATT-TAAAATAATTGCCAAGTATTTTCATAAGATTTAGATGCATTACCCTCTATGCTTTCTTTAGTCAATTAATGAGTATGCTAGGAGCATGGATTCAGGAACTAAAGGTAAAAATAGA----------TATCTCCTAAATTTAGAAGAGAC-ATTCAAGTATCATGAGTGTTTCAGGGTGCCTTTTACAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223789877 352 - 227556264 TT-AC----AGTTCAAAATTATTTGTATAGTTA------G-AGTAGAAAATTGTCAGAATTTGTACCAACCTTAAGACATGTATTGCGAATTCGTTCTTTGAA----------CAAATCAGAAACG-------TGAGTTTCCTTTTCTCTCCAAAAAGAGGAGTGCT-G-------------------------------------------GTTAAATTCTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGATTGTTGTGATTCAGATT-TAAAATAATTGCCAAGTATTTTCATAAGATTTAGATGCATTACCCTCTATGCTTTCTTTAGTCAATTAATGAGTATGCTAGGAGCATGGATTCAGGAACTAAAGGTAAAAATAGA----------TATCTCCTAAATTTAGAAGAGAC-ATTCAAGTATCATGAGTGTTTCAGGGTGCCTTTTACAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16840110 352 - 220367699 TT-AC----AGttcaaaattatttgtatagTTA------G-AGTAGAAAATTGTCAGAATTTGTACCAACCTTAAGACATGTATTGCGAATTAGTTCTTTGAA----------CAAATCAGAAAcg-------tgagtttccttttctctccaaAAAGAGGAGTGCT-G-------------------------------------------GTTaaattctgtt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aatgtgattgTTGTGattcagatt-taaaataattgccAAGTATTTTCATAAGATTTAGATGCATTACCCTCTATGCTTTCTTTAGTCAATTAATGAGTATGCTAGGAGCATGGATTCAGGAACTAAAGGTAAAAATAGA----------TATCTCCTAAATTTAGAAGAGAC-ATTCAAGTATCATGAGTGTTTCAGGGTGCCTTTTACAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82639820 352 + 85787240 TT-AC----AGTTCAAAATTATTTGTATAGTTA------G-AGTAGAAAATTGTCAGAATTTGTACCAACCTTAAGACATGTATTGCGAATTAGTTCTTTGAA----------CAAATCAGAAACA-------TGAGTTTCCTTTTCTCCCCAAAAAGAGGAGTGCT-G-------------------------------------------GTTAAATTCTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGTGATTGTTGTGATTCAGGTT-TAAAATAATTGCCAAGTATTTTCATAAGATTTAGATGCATTACCCTCTATGCTTTCTTTAATCAATTAATGAGTATGCTAGGAGCATGGATTCAGGAACTAAAGGTAAAAATAGG----------TATCTCCTAAATTTAGACGAGAC-ATTCAAGTATCATGAGTGTTTCAGGGTGCCTTTTGCAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14351702 346 - 49578535 TT-AAAGTGAGTTCAAAAT--TTTGTATAGTTA------G-GGTAGAAAATTATCAGAATTTGTACCAACCTCGAGACATGTATTGCAAATTAGTTCTTTGAA----------CAAATCAGAAACA-------CGAGTTTCCTTTTCTCCCCAAAAAGAGGAGTGCT-G-------------------------------------------GTTAAATTCTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATGATTGTTGTGATTCAGGTT-TAAAATAATTGCCAAGTGTTTTCATAAGATTTAGGCACACTGCTTTCTACGCTTTCTTTAATCGATTCATGAGGATGCCAGGAACATGGATATCG---CCTATGTT-----TAGA----------CATCTCCTACATTTAGATGAGAC-ATTCAAGTGTCGTGGGTGTTCCAGGGTGCCGTTTACAC i calJac3.chr19 I 1439 C 0 s mm10.chr1 178872212 418 + 195471971 TC-AC----AGTTTGAAATTATAGGTATGGTTAAAGTCGG-AGTAGAAAATTGTCATAATTTGTACCAACCCAAAGACATGT--TGCAAATCAGTTCTTTGAAAAATCAAAGCTAAATCAGGCTCGCACCTGCTGTGCCAGCCTTCAGATCACAGAGGAGAGGCGAT-GCAGAGTGTGAGGAGACGCAAGGACTTGTCTCAACAAAACCAAAACTAGATTTCCTTT---------------------------------------------------------------------------------------------TCCACCACA------------------------------------------------------------------------AAAGGGACCACTGGGACTCAGACC-C---------------CATTCTCACAAGATTCAGACACAATGCCCACTGCGTCTTTTCTAA-CTGTGTGTGAGTTTGCCCTGAACATAAATTCAGGAACTAAA-TCAAAAACAGATCTCTCTCTCTCTCTCTCAAATACAGATGAGAC-CTCCAAGTA-CTTAAATGTTTCTACATGACTTTTGTAC i mm10.chr1 C 0 I 355 s canFam3.chr7 36453146 511 + 80974532 TC-AC----AGTTCAGAATGGTAAGCGTGGTCA------GAAATAGAAAATTGTCAGAATGTGTACCAACCCGAAGGCATATACCACAGACTGTGTCTTTGAA----------TAAATCAGA-----------T--GTTTCCTTTTCTCCCCTCAAAAAGGAGTATT-A-------------------------------------------GTCAAATTCTTTTTTttttttttttagattatttatttattcacgagagaggcagagacaaaggcagagggagaagcaggctccctgtggggagcctgatgcgggactctatcccaggatcccaggatcatgacctgagcgaaaggcagatgctcacccgctgagcgacctaggcatcccTAAATTCTGATAATACTGTTTTGATTAAAGTTATACTCTAATTTCTGAGGGATTCCATAGGATTTAGATGCATGGCCCACAGTGCTTTCTT---------AATTAATCTGCCAGGAACGTGAATTTAGAAACCAAAGATACAAATAGA----------TGAAAC---AATATAGATGAGACAATTCAACTACATGGGGTGTTTTCATTCGTCTTTTACA- i canFam3.chr7 C 0 C 0 a score=4694.000000 s hg38.chr1_KI270759v1_alt 305524 4 + 425601 TGGT s panTro4.chr1 225062369 4 + 228333871 TGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226431257 4 - 229942017 TGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140315225 4 - 143122389 TGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17026367 4 - 229590362 TGGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223790229 4 - 227556264 TGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16840462 4 - 220367699 TGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82640172 4 + 85787240 TGGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14352048 3 - 49578535 TGG- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36453657 1 + 80974532 T--- i canFam3.chr7 C 0 C 0 e mm10.chr1 178872630 355 + 195471971 I a score=1229323.000000 s hg38.chr1_KI270759v1_alt 305528 372 + 425601 TTCTTATTTATAAC---TATGCTAGTAAATATGGCCTAAAATTGGCTTTAATTAAATAACTGCAAAACTAGGAGTCAAATGAAAGCTAACCAAGTT---TTTTTACATCTTTGGGACACCACTGCTATGAGGCCTCAAATCACATTTTGCAACCTACCTGTCTCCAAACAATCTAATCTTTGGACTCAAGATGCAGTCACATCGCTCCTGTTTTCTTAGGTAAATGG--ATAGCCAGGGGTGTTGGTTTGCCGCCCTCTG-CAGAGATAAGGATGAGCCATCTGCTC------------------------------CCAGCTTTTCACACCCACTAGTTCCAGATTCTACTTAGACTGTAAAGTAGGTAAAAATAGGTTTCATCCAATAAGTATGCTCAATATTAATTTT s panTro4.chr1 225062373 372 + 228333871 TTCTTATTTATAAC---TATGCTAGTAAATATGGCCTAAAATTGGCTTTAATTAAATAACTGCAAAACTAGGAGTCAAATGAAAGCTAACCAAGTT---TTTTTACATCTTTGGGACACCACTGCTATGAGGCCTCAAATCACATTTTGCAACCTACCTGTCTCCAAACAATCTAATCTTTGGACTCAAGATGCAGTCACATCGCTCCTGTTTTCTTAGGTAAATGG--ATAGCCAGGGGTGTTGGTTTGCCGCCCTCTG-CAGAGATAAGGATGAGCCATCTGCTC------------------------------CCAGCTTTTCACACCCACTGGTTCCAGATTCTACTTAGATTGTAAAGTAGGTAAAAATAGGTTTCATCCAATAAGTATGCTCAATATTAATTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226431261 372 - 229942017 TTCTTATTTATAAC---TATGCTAGTAAATATGGCCTAAAATTGGCTTTAATTAAATAACTGCAAAATTAGGAGTCAAATGAAAGCTAACCAAGTT---TTTTTACATCTTTGGGACACCGCTGCTATGACGTCTCAAATCACATTTTGCAACCTACCTGTCTCCAAACAATCTAATCTTTGGACTCAAGATGCAGTCACATCGCTCCTGTTTTCTTAGGTAAATGG--ATAGCCAGGGGTGTTGGTTTGCCGCCTTCTG-CAGAGATAAGCGTGAGCCATCTGCTC------------------------------CCAGCTTTTCATACCCACTAGTTCCAGATTCTACTTAGATTGTAAAATAGGTAAAAACAGGTTTCATCCAATAAGTATGCTCAATATTAATTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140315229 372 - 143122389 TTCTTATTTATAAC---TATGCTAGTCAATATGGCCTAAAATTGGCTTTAATTAAATAACTGCAAAAGTAGGAGTCAAATGAAAGCTAACCAAGTT---TTTTTACATCTTTGGGACACCACTGCTATGAGGTCTCAAATCACATTTTGCAACCTACCTGTCTCCAAACAATCTAATCTTTGGACTCAAGATGGAGTCACATCGCTCCTGTTTTCTTAGGTAAATGG--ATAGCCAGGGGTGTTGGTTTGCTGCCCTCTG-CAGAGATAAGGATGAGCCGTCTGCTC------------------------------CCAGCTTTTCACACCCACTAGTTCCAGATTCTACTTAGATTGTAAAGTAGGTAAAAATAGGTTTCATCCAATAAGTATGCTCAATATTAATTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17026371 372 - 229590362 TTCTTATTTATAAC---TATGCTGGTAAATATGGCCTAAAATTGGCTTTAATTAAATCACTGAAAAACTAGGAGTCAAATGAAAGCTAACCAAGTT---TTTTTACATCTTTGGGACACCACTGCTATGAGGTCTCAAATCACATCTTGCAACCTACCTGTCTCCAAACAATCTAATCTTTGGACTCGAGATGCAGTCACATCGCTCCTGCTTTCTTAGGTAAATGG--ATAGCGAGGGGTGTTGGTCTGCCGCCCTCTG-CAGAGATAATCATGAGCCATCTGCTC------------------------------CCAGCTTTTCACACCCACTAGTTCCAGATTCTACTTAGGTTGTAAAATAGGTAAAAATAGGTTTCATGCAATAAGTATGCTCAATATTAATTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223790233 372 - 227556264 TTCTTATTTATAAC---TATGCTGGTAAATATGGCCTAAAATTGGCTTTAATTAAATCACTGAAAAACTAGGAGTCAAATGAAAGCTAACCAAGTT---TTTTTACATCTTTGGGACACCACTGCTATGAGGTCTCAAATCACATCTTGCAACCTACCTGTCTCCAAACAATCTAATCTTTGGACTCGAGATGCAGTCACATCGCTCCTGCTTTCTTAGGTAAATGG--ATAGCGAGGGGTGTTGGTCTGCCGCCCTCTG-CAGAGATAATCATGAGCCATCTGCTC------------------------------CCAGCTTTTCACACCCACTAGTTCCAGATTCTACTTAGGTTGTAAAATAGGTAAAAATAGGTTTCATGCAATAAGTATGCTCAATATTAATTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16840466 372 - 220367699 TTCTTATTTATAAC---TATGCTGGTAAATATGGCCTAAAATTGGCTTTAATTAAATCACTGAAAAACTAGGAGTCAAATGAAAGCTAACCAAGtt---tttttACATCTTTGGGACACCACTGCTATGAGGTCTCAAATCACATCTTGCAACCTACCTGTCTCCAAACAATCTAATCTTTGGACTCGAGATGCAGTCACATCGCTCCTGCTTTCTTAGGTAAATGG--ATAGCGAGGGGTGTTGGTCTGCCGCCCTCTG-CAGAGATAATCATGAGCCATCTGCTC------------------------------CCAGCTTTTCACACCCACTAGTTCCAGATTCTACTTAGGTTGTAAAATAGGTAAAAATAGGCTTCATGCAATAAGTATGCTCAATATTAATGTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82640176 373 + 85787240 TTCTTATTTATAAC---TATGCTGGTAAATATGGCCTAAAATTGGCTTTAATTAAATCACTGAAAAACTAGGAGTCAAATGAAAGCTAACCAAGTT---TTTTTACATCTTTGGGACACCACTGCTATAAGGTCTCAGATCACATTTTGCAACCTACCTGTCTCCAAACAATCTAATCTTTGGACTCGAGATGCAGTCACATCACTCCTGCTTTCTTAGGTGAATGG--ATAGCGAGGGGTGTTGGTCCGCCGCCTTCTGCCAGAGATAATGATGAGCCATCTGCTC------------------------------CCAGCCTTTCACATCCACTAGTTCCAGATTCTACTTAGGTCGTAAAATAGGTAAAAATAGGTTTCATGCAATAAGTATGCTCAATATTAATTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14352051 338 - 49578535 --CTTATTTATAAC---TATGCTAGAAAATATGACCTAAAATTGGCTTTAACCAAGTAACTGAAAAACCGGGAGTCCATTGAAAGCTAACTGAG-A---TTTTAACCTCTTTGGGGTACCACTGCTATCAGGTCT------ACAGTTTGCAGCAGACCTGGCTCCAAACAATCCAATCTTTGGAATCAAGATGCAGCCACACC-CTCCTGTTTTCTTAGGTGAAGGG--ATAGCCACGGGTGTTGGCTTG-------TTG-T---------------CCATCTGCTC------------------------------CCAGCTTTTCA-ACCCA-TATTTCCAGATTCTACTTAGGATGTCAAATGGGTAAAAATAGGTTTCATCCAATAAGTATGCTCAATATTAATTTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178872985 307 + 195471971 TTGTTGTTCACAACAATTATGTGACTAAATGTGGCCCCAAACCAGCTTTTATTAAATAACCAAGAAATTGA-----AAATGAACACTAGGCAAG-T---TCCTTCCTTCTCCGGTGTA-------------------AATCACATTTC-------ACCTGTCTC----CAATACAATCTCTAAGGTCAAAATCCAGTCACATCTCTCATGTT------AGAGGATGG--ACGGTCCAGGATGTTGGTTT------------TTGAGATGAGCATGTGCTA-CCACCA------------------------------ACACCCTGACACAGCCCTTTGCT--------------AGCTGTAAAATATTTAAAACCAAGTTACGTCCAATAAATGTGGACAATCTTACTTTT i mm10.chr1 I 355 I 563 s canFam3.chr7 36453658 380 + 80974532 ATCTCGTTTAAAAC---CGTGCTCCTACATGTAATCTAAAACTGGCTTTAAGTAGCTG---GAGAAATGGGGAGTAGAATTAAAGCTGACTGAGCTTGGTTTTTAC-TCTTTGGGGAACCGGTGCTGTCTGGACTGGGATCATAGTGTGCCACCTATCAGTCTCCAAACCTTGTAGTCTTGGAGATCAGGATGGGGTCGTATCCCGTGGGTCTTCTCAGGTAGATGGATATAGTCCAGGATGCATGTTTG----CTTCTG-CAGAGGTCAGCCTGTGCCCCCTGCCCCTGCCCCCCACAGTCACTCAGATATGACCACCTGCTCTTCACACCTGCTA----------TTACCCAAACTGTAAAAC---------TATGTTTCATCCAATACTTGTGCTCAGTCTTACCTTT i canFam3.chr7 C 0 C 0 a score=8595.000000 s hg38.chr1_KI270759v1_alt 305900 2 + 425601 CA s panTro4.chr1 225062745 2 + 228333871 CA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226431633 2 - 229942017 CA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140315601 2 - 143122389 CA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17026743 2 - 229590362 CA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223790605 2 - 227556264 CA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16840838 2 - 220367699 CA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82640549 2 + 85787240 CA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14352389 2 - 49578535 CA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36454038 2 + 80974532 CA i canFam3.chr7 C 0 C 0 e mm10.chr1 178873292 563 + 195471971 I a score=1615794.000000 s hg38.chr1_KI270759v1_alt 305902 437 + 425601 GAAATGAATTAATTAAGCTGAGAATTGCACATGAGCATAGCACCTTGTTTCAGAAGGGTTTTC---AGCCTTAGAGGGGCACGTGGCTTTACTATACAGAACACACAGCCAGCTGAATGGTGCTGGGGACACCCAGGCATGAGTGACAGCAAGCCCT-CCTCAGCCTGCAGCCTCATCTCTTGGCTTCTGTCTTCCAGCTGCAGAACCAGAGCGAGCTGCGGGCCCCCACCGCAGAGAAGGCTGCCTTTTTCCTGGATGCCGCCATTGCCTCCCGCAGGAGCCACCAACAGGACTGTGATGAGGACGACCACCGCAACTCACACGTGTTCTTCACACTGCACATCTACCAGTACCGGATGGAGAAGAGCGGGAAAGGGGGAAGTAAGTCGGCCA------CTCCACCCTCCTGCCTCCTTAGCGGCTCTGGCCCCAGCCAGAAATCC s panTro4.chr1 225062747 437 + 228333871 GAAATGAATTAATTAAGCTGAGAATTGCACACGAGCATAGCACCTTGTTTCAGAAGGGTTTTC---GGCCTTAGAGGGGCACGTGGCTTTACTATACAGAACACACAGCCAGCTGAATGGTGCTGGGGACACCCAGGCATGAGTGACAGCAAGCCCT-CCTCAGCCTGCAGCCTCATCTCTTGGCTTCTGTCTTCCAGCTGCAGAACCAGAGCGAGCTGCGGGCCCCCACCGCAGAGAAGGCTGCCTTTTTCCTGGATGCCGCCATTGCCTCCCGCAGGAGCCACCAACAGGACTGTGATGAGGACGGCCACCGCAACTCACACGTGTTCTTCACACTGCACATCTACCAGTACCGGATGGAGAAGAGCGGGAAAGGGGGAAGTAAGTCGGCCA------CTCCACCCTCCTGCCTCCTTAGCGGCTCTGGCCCCAGCCAGAAACCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226431635 436 - 229942017 GAAACGAATTAATTAAGCTGAGAATTGCACATGAGCATAGCACCTCGTTCCAGAAGGGTTTTT---GGCCTTAGAGAGGCACGTGGCTTTACTATACAGAATGCACAGCCAGCTGAATGGAGCCGGGGACACCCAGGCATGAGTGACAGCAAGCCCT-CCTCAGCCTGCAGCCTCACCTCTTGGCTTCTGTCTTCCAGCTGCAGAACCAGAGCGAGCTGCGGGCCCCCACCGCAGAGAAGGCTGCCTTTTTCCTGGACGCCGCCATTGCCTCCCGCAGGAGCCACCAACAGGACTGTGATGAGGATGACCACCGCAACTCACACGTGTTCTTCACACTGCACATCTACCAGTACCGGATGGAGAAGAACGGGAGAGGGGGAAGTAAGTCGGCTA------C-CCACCCTCCTGCCTCCTTAGCAGCTCTGGCCCCAGCCAGAAACCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140315603 437 - 143122389 GAAACGAATTAATTAAGCTGAGAATTGCACATGAGCATAGCACCTCGTTCCAGAAGGGTTTTC---CGCCTTAGAGAGGCACATGGCTTTACTATACAGAATGCACAGCCAGCTGAATGAAGCCGGGGACACCCAGGCATGAGTGACAGCAAGCCCT-CCTCAGCCTGCAGCCTCAGCTCTTGGCTTCTGTCTTCCAGCTGCAGAACCAGAGCGAGCTGCGGGCCCCCACCGCAGAGAAGGCTGCCTTTTTCCTGGACGCCGCCATTGCCTCCCGCAGGAGCCACCAACAGGACTGTGATGAGGACGACCACCGCAACTCACACGTGTTCTTCACGCTGCACATCTACCAATACCGGATGGAGAAGAGCGGGAAAGGGGGAAGTAAGTCGGCCC------CTCCACCCTCCTGCATCCTTAGCGGCTCCGGCCCCAGCCAGAAACCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17026745 437 - 229590362 GAAACGAATTAATGAAGCTGAGAATCGCACATGAGCATAGCACCTCGTTCCAGAAGGGTTTTT---GGCCTTAGAGAGGCACGTGGCTTTACTATACAGAAGGCACAGCCAGCTGAGTGGAGCCAGGGACACCCAGGCGTGAGGGACAGCAAGCGCT-CCTCAGCCTGCAGCCTCAGCTTTTGGCTTCTGTCTTCCAGTTGCAGAACCAGAGCGAGCTGCGGGCCCCCACCGCAGAGAAGGCTGCCTTCTTCCTGGACGCCGCCATTGCCTCCCGCAGGAGCCACCAACAGGACTGCGATGAGGACGACCCCCGCAACTCACACGTGTTCTTCACACTGCACATCTACCAGTACCGGATGGAGAAGAGCGGGAAAGGGGGAAGTAAGTCGACCA------CTCCACCCTCCTGCCTCCTTAGCGGCTCTGGCCCTAGCCAGAAACCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223790607 437 - 227556264 GAAACGAATTAATGAAGCTGAGAATCGCACATGAGCATAGCACCTCGTTCCAGAAGGGTTTTT---GGCCTTAGAGAGGCACGTGGCTTTACTATACAGAAGGCACAGCCAGCTGAGTGGAGCCAGGGACACCCAGGCGTGAGGGACAGCAAGCGCT-CCTCAGCCTGCAGCCTCAGCTTTTGGCTTCTGTCTTCCAGTTGCAGAACCAGAGCGAGCTGCGGGCCCCCACCGCAGAGAAGGCTGCCTTCTTCCTGGACGCCGCCATTGCCTCCCGCAGGAGCCACCAACAGGACTGCGATGAGGACGACCCCCGCAACTCACACGTGTTCTTCACACTGCACATCTACCAGTACCGGATGGAGAAGAGCGGGAAAGGGGGAAGTAAGTCGACCA------CTCCACCCTCCTGCCTCCTTAGCGGCTCTGGCCCTAGCCAGAAACCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16840840 437 - 220367699 GAAATGAATTAATTAAGCTGAGAATTGCACATGAGCATAGCACCTCGTTGCAGAAGGGTTTTT---GGCCTTAGAGAGGCACGTGGCTTTACTATACAGAAGGCACAGCCAGCTGAGTGGAGCCAGGGACACCCAGGCGTGAGTGACAGCAAGCgct-cctcagcctgcaggctCAGGTTTTGGCTTCTGTCTTCCAGTTGCAGAACCAGAGCGAGCTGCGGGCCCCCACCGCAGAGAAGGCTGCCTTCTTCCTGGATGCCGCCATTGCCTCCCGCAGGAGCCACCAACAGGACTGCGATGAGGACGACCCCCGCAACTCACACGTGTTCTTCACACTGCACATCTACCAGTACCGGATGGAGAAGAGCGGGAAAGGGGGAAGTAAGTCGACCA------CtccaccctcctgcctccttAGCGGCTCTGGCCCTAGCCAGAAACCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82640551 437 + 85787240 GAAACGAATTAATTAAGCTGAGAATGGCACATGAGCATAGCACCTCGTTGCAGAAGGGTTTTT---GGCCTTAGAGAGGCACGTGGCTTTACTATACAGAAGGCACAGCCAGCTGAATGGAGCCAGGGACACCCAGGCGTGAGTGACAGCAAGCCCT-TCTCAGCCTGCAGCCTCAGCTTTTGGCTTCTGTCTTGCAGTTGCAGAACCAGAGCGAGCTGCGGGCCCCCACCGCAGAGAAGGCTGCCTTCTTCCTGGACGCCGCCATTGCCTCCCGCAGGAGCCACCAGCAGGACTGCGACGAGGACGACCCCCGCAACTCACACGTGTTCTTCACGCTGCACATCTACCAGTACCGGATGGAGAAGAGCGGGAAAGGGGGAAGTAAGTCGACCA------CTCCGCCCTCCTGCCTCCTTAGTGGCTCTGGCCCTAGTCAGAAACCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14352391 365 - 49578535 GAAATGAATTAATTAAGCTGAGAATTGCACACGAGTGCAGCACCTGGTTCCAGAAGCGTTTTC---GAGCTTAGACAGG--------------------------------------TGGAGTCTGAA-----------------------------------------AGCTTCATCTCTTGGCTTCTGTCTTCCAGCTGCAGAACCAGAGCGAGCTGCGGGCCCCCACCGCGGAGAAGGCCGCCTTCTTCCTGGACGCCGCCATTGCCTCCCGCAGGAGCCACCAGCAGGACTGTGACGAGGACGACCACCGTAACTCACACATGTTCTTCACACTGCACATCTACCAGTACCGGATGGAGAAGAGCGGGAAAGGCGGAAGTAAGTCGACCAGCACCCCTCTCCCCTCGTCCCTCCTTAGTGGCTCTGGCCCCAGCCAGGAACCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178873855 351 + 195471971 GAAAAAAAATGACTAAGCTGAGACTGGCCCATGCGTACAG-GCCTGGTTTCAGAAGGACTTCT----GCCTTCCAGAG-----------------------------------TGGATGG------------------------------------------AGCCCACAGCCTCATCTCTTACTTTCTGTCCCCCAGCTGCAGAACCAGAGTGAGCTCCGGGCCCCCACCGCAGAGAAAGCTGCCTTCTTCCTGGACGCCGCCATTGCCTCGAGGCGAAGCAACCAACAGGATTGTGACGAGGATGACCACCGCAACTCCCATATGCTCTTCACCCTGCACATCTACCAGTACCGGATGGAGAAGAGCGGGAAGGGTGGAAGTAAGT---CCA------TCTTAGCCAGCTCCAGCACTAGCG---CTGGCC--AGCCAGCACCCC i mm10.chr1 I 563 I 1565 s canFam3.chr7 36454040 383 + 80974532 ----GGAATGGGTTAAGTGGACAATTGCACGTGAGTCTGGGCCCTTGTTCCAGAAGGATCTTTGTTGGCCTCCAAGAGGCACATAGCTTTTCTGCA------GCATGGAGAGCTGTGTG------------------------------CGAGCCCCGTCTCAGCCTGAGGCTTCAGCTGTTGGCTTGTGTCTTCCAGCTGCAGAACCAGAGTGAGCTGCGGGCACCTACGGCGGAGAAGGCCGCCTTCTTCCTGGATGCCGCCATTGCCTCCCGACGGGGCAGCCAGCAGAAATGTGACGAGGATGACCACCGAAACTCGCACATGCTCTTCACCCTGCACATCTACCAGTACCGCATGGAGAAGAGCGGGAAAGGGGGAAGTAAGTGGCCTG-----TCTCTACCC-------------------ATAGCCCGGCCCAGGGTACC i canFam3.chr7 C 0 C 0 a score=52061.000000 s hg38.chr1_KI270759v1_alt 306339 16 + 425601 ----CTTG--GGCAACCATGAC s panTro4.chr1 225063184 16 + 228333871 ----CTTG--GGCAACCATGAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226432071 16 - 229942017 ----CTTG--GGCAACCATGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140316040 16 - 143122389 ----CTTG--GGCAACCATGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17027182 16 - 229590362 ----CTCG--GACAACCACGAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223791044 16 - 227556264 ----CTCG--GACAACCACGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16841277 16 - 220367699 ----CTCG--GACAACcatgac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82640988 16 + 85787240 ----CTCG--GGCAACCATGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14352756 16 - 49578535 ----CTCA--GGCAACCATGAC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36454423 22 + 80974532 CGTCATTGATGGCAGCCATGAC i canFam3.chr7 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I a score=33213.000000 s hg38.chr1_KI270759v1_alt 306355 15 + 425601 CTTtgtgtgtgtgtg s panTro4.chr1 225063200 15 + 228333871 CTTtgtgtatgtgtg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226432087 15 - 229942017 CTTtgtgtgtgtgtg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140316056 15 - 143122389 CTTtgtgtgtgtgtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17027198 15 - 229590362 gtgtgtgtgtgtgtg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223791060 15 - 227556264 gtgtgtgtgtgtgtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16841293 11 - 220367699 gtgtgtgtgtg---- i papAnu2.chr1 C 0 I 194 s chlSab2.chr25 82641004 15 + 85787240 CTCtgtgtgtgtgtg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14352772 15 - 49578535 CTTTGTGTGTGTCTG i calJac3.chr19 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I e canFam3.chr7 36454445 0 + 80974532 C a score=285853.000000 s hg38.chr1_KI270759v1_alt 306370 152 + 425601 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagacagggtcttgctctgtcacccaggctgcagtgcagtggcacg---atcacagctcactgcagcctcaaactcctgggctcaagtgatcct s panTro4.chr1 225063215 106 + 228333871 tgtgtgtgtgtgt----------------------------------------------gAgagacagggtcttgctctgtcacccaggctgcagtgcagtggcacg---atcacagctcactgcagcctcaaactcctgggctcaagtgatcct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226432102 122 - 229942017 tgtgtgtgtgtgtgtgtgtgtgtgt------------------------------gAGAGAgagacagggtcttgctctgtcacccaggctgcagtacagtggcacg---accacagttcactgcagcctcaaactcctgggctcaagtgatcct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140316071 135 - 143122389 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--------------------gtgagacagggtcttgctctgtcacccaggctgcagtgcagtggcacaatcatcacagctcactgcagcctcaaactcctgggctcaagtgatcct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17027213 92 - 229590362 ----tgtgtg--------------------------------------------------------Ggggtcttgctctgtcacccaggctgcagggcagtagcacg---ctcacagctcactgcagcctcaaactcctgggctgaagtgatcct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223791075 124 - 227556264 ----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------------------------gtgtgtcagggtcttgctctgtcacccaggctgcagtgcagtagcacg---ctcacagctcactgcagcctcaaactcctgggctgaagtgatcct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16841498 126 - 220367699 --tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt------------------------gtgtgtcagggtcttgctctgtcacccaggctgcagtgcagtcgcacg---ctcacagctcactgcagcctcaaactcctgggctgaagtgatcct i papAnu2.chr1 I 194 C 0 s chlSab2.chr25 82641019 128 + 85787240 tgtgtgtgtgcgcgcgtgtgtgtgtgcgtgcgtgt------------------------gtgagacagggtcttgctctgtcacccaggctgcagtgcagtggcatg---ctcacagctcactgcagcctcaaactcctgggctcaagtgatcct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14352787 92 - 49578535 ------------------------------------------------------------tgtgacagggtcttgttctgtcacccaggcttcagtgcagtggcaca---atcacagctcactgcagcctcaaactcctgggctcaagtgatcct i calJac3.chr19 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I e canFam3.chr7 36454445 0 + 80974532 C a score=2961336.000000 s hg38.chr1_KI270759v1_alt 306522 999 + 425601 cctgcctcagtctcccaagtagcttgggactacaggctcatgccaccacacctagctatttatttggtta----tctttgtagagatgggaccttgctatgttgcccag-gctggtctagaactcccggtcttgagatcctcttgccttgatctcccaaagtgttgggatgaaaggtatgagccacc---atgcctagccAAACTTTTCTTAATAGACTACAA---------TATGCAGttcagtgactcgta---------------attcaagataattatagtatctgggctgaagttcacttttgaactgtccagg-gaaaggagtttgctTTGGTAAAGGTAATTTACAAATGTCATTGCCATGAGAATGTGAG--AGGTCAAAGTTACAAAAAGAAAACAACTGCCTGACAGTATCTTTTTGTTCACAGACCTCAAAAATGCTCCTCAAGAAAGACCAACATTTATCCACCAAAGCACTCCGGCAGTGTGTTATC-ATCATTAGCTCGAGGCCACTGTATGGAC----------------CATGTTTTTTAAAATAGCATAGAAATCAGACTTTTGAATAACTACCCAGACCCTGGCTGCCTCCCTCAAATC------GTCAGTGAAGGTTTACTGTCAAAACCCAGGTACGGTGCCTGCTCTTCGAGTGAGCTGCCCTGCCAGGAACCCAACACTGTGCCCCTACAGACCCCTCTTGGCTGTGTTTCCAAAGTCAGCCCGGGCTGGGGTGCAATTC----TCTGCCTTCTGTGAAGTAGTGTTTACTCTATGCCCAAAAGAGTTGAGCACCAGATCAGCTGAATGTCTCCAGTGGGGATCTTGGACCAGGGGCAAAGTGGTCTGTTGATTTCACTGGG--TTCCTAAGGCAGGTTGTGGGTAACGGGGCTgctgggctggccgggcagtggcttccgtggttcctccatgtcccgctctgccgggctttcaatacacaggc----aactggctcccagcgctttctgcatgattgtctcaaagacactggatgCCAGAAAAACAATCA-GAAAACTGAGTT s panTro4.chr1 225063321 999 + 228333871 cctgcctcagtctcccaagtagcttgggactacaggctcatgccaccacacctagctatttatttgttta----tctttgtagagatgggaccttgctatgttgcccag-gctggtctagaactcccggtcttgagatcctcttgccttggtctcccaaagtgttgggatgaaaggtatgagccacc---atgcctagccAAACTTTTCTTAATAGACTACAA---------TATGCAGttcagtgattcgta---------------attcaagataattatagtatctgggctgaagttcacttttgaactgtccagg-gaaaggagtttgctTTGGTAAAGGTAATTTACAAATGTCATTGCCATGAGAATGTGAG--AGGTCAAAGTTACAAAAAGAAAACAACTGCCTGACAGTATCTTTTTGTTCACAGACCCCAAAAATGCTCCTCAAGAAAGACCAACATTTATCCCCCAAAGCACTCCGGCAGTGTGTTATT-ATCATTAGCTCGAGGCCACTGTATGGAC----------------CATGTTTTTTAAAATAGCATAGAAATCAGGCTTTTGAATAACTACCCAGACCCCGGCTGCCTCCCTCAAATC------GTCAGTGAAGGTTTACTGTCAAAACCCAGGTGCGGTGCCTGCTCTTCGAGTGAGCTGCCCTGCCAGGAACCCAACACTGTGCCCCTACAGACACCTCTTGGCTGTGTTTCCAAAGTCAGCCCGGGCTGGGGTGCAATTC----TCTGCCTTCTGTGAAGTAGTGTTTACTCTATGCCCAAAAGAGTTGAGCACCAGATCAGCTGAATGTCTCCAGCGGGGATCTTGGACCAGGGGCAAAGTGGTCTGTTGATTTCACTGGG--TTCCTAAGGCAGGTTGTGGGTAACGGGGCTGCTGGGCTGGCCGGGCAGTGGCTTCCGTGGTTCCTCCATGTCCCGCTCTGCCGGGCTTTCAATACACAGGC----AACTGGCTCCCAGCGCTTTCTGCATGATTGTCTCAAAGACACTGGATGCCAGAAAAACAATCA-GAAAACTGAGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226432224 1000 - 229942017 cctgcctcagtctcccaagtagc-tgggaccacaggctcatgccaccacacctagctatttatttattta----tttttgtagagatgggaccttgctatgttgcccag-gctggtctagaactcccggtcttgagatcctcttgccttggactcccaaagtgttgggatgaaaggtatgagccacc---atgcctagctAAACTTGTCTTAATAGACTACaa---------tacgcagttcagtgattcgta---------------attcaagataattatagtatctgggctgaggttcgcttttgaactgtccagg-gaaaggagtttgctTTGGTAAAGGTAATTTACCAATGTCGTTGCCATGAGAATGTGAG--AGGTCAAACTTACAAAAAGAAAACAACTGCCTAACAGTATCTTTTTGTTCACAGACCCCAAAAATGCTCATCAAGAAAGATCAACAGGTATCCACCCAAGCACT-CAGCAGTGTGTTATT-ATCATTAGCTTGAGGCCACTGTATGGGC----------------CATATTTTTTTAAATAGCATAGAAATCAGACTTTTGAATAACTACCCAGACCCTGGCTGCCTCCCTCAAATC------ATCAGTGAAGGTTTACTGTCAAAACCCAGGCACGGTGCCTGCTCTTCGAGTGAGCTGCCCTACCAGGAACCCAACGCCGTGCCCTTACAGACCCATCTTGGCTGTGTTTCCAAAGTCAGCCCGGGCTGGGGCGCAATTC----TCTGCCTTCTGTCAAGCAGTGTTTACCGTATGCCCGAAAGAGTTGAGCACCAGATCAGCTCAGTGTCTCCAGTGGGGATCCTGGACC-GGGGCAAAGTGGTCTATTGATTTCACTGGG--TTCCTAAGGCAGGTTGTGGGCAACGGGGCTGCTGGGCTGGCCGGGCAGTGGCTTCCGTGGTTCCTCCATGTCCCGCTCCGTGGGGCTTTCAATACACAGGCAACTAACTGGCTCCCAGCGCTTTCTGCACGGTTGTCTCAAAGACACTGGATGCCAGAAAAACAATCA-GAAAACTGAGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140316206 998 - 143122389 cctgcctcagtctcccaagtagc-tgggactacaggctcatgccaccacacctagctatttatttattta----tctttgtagagatgggaccttgctatgttgcccag-gctggtctagaactcccggtctggagatcctcttgccttggtctcccaaagtgttgggatgaaaggtatgagccacc---atgcctagccAAACTTTTCTTAATAGACTACAA---------TATGCAGttcagtgatgcgta---------------attcaagataattatagtatctgggctgaagttcacttttgaactgtccagg-gaaaggagtttgctTTGGTAAAGGTAATTTACAAATGTTATTGCCATGAGAATGTGAG--AGGTCAAACTTACAAAAAGAAAACAACTGCCTAACAGTATCTTTTTGTTCACAGACCCCAGAAATGGTCCTCAAGAAAGACCAACATTGACCCACCAAAGCACTCCGGCAGCGCGTTATT-ATCATTAGCTTGAGACCGCTGTATGGGC----------------CATGTTTTTTAAAATAGCATAGAAATCAGACTTTTGAATAACTACCCAGACCCTGGCTACCTCCCTCAAATC------ATCAGTGAAGGTTTACTGTCAAAACCCAGGTACGGTGCCTGCTCTTCGAGTGAGCTGCCCTGCCAGGAACCCAACGCTGTGCCCCTACAGACCCCTCTCGGCTGTGTTTCCAAAGTCAGCCCGGGCTGGGGTGCGATTC----TCTGCCCTCTGTGAAGTAGTGTTTACTCTATGCGCAAAAGAGTTGAGCACCAGATCAGCTGAATGTCTCCAGTGGGGATCTTGGACCAGAGGCAAAGTGGTCTGTTGATTTCACTGGG--TTCCTAAGGCAGGTTGTGGGTAACGGGGCTGCTGGGCTGGCGGGGCAGTGGCTTGCACGGTTCCTCCATGTCCCGCTCTGCAGGGCTTTCAATACACAGGC----AACTGGCTCCCAGCGCTGTCTGCATGATTGTCTCAAAGACACTGGATGCCAGAAAAACAATCA-GAAAACTGAGTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17027305 1002 - 229590362 cctgcctaagtctcccaagtagc-tgggactgcaggctcatgccaccacacctagctatttattttttta-----ttttgtagagatgcgaccttgctgtgttgcccag-gctggtctagagctcctggtcttgagatcctcttgccttggtctcccaaagtgttgggatgacaggtatgagctgcc---acgcctagccAAACTTTTCTTACTAGACTACAA---------TATGCAGTTCAGTGATTCGTAATGCAAGATAATTATATGCAAgataattatagtgtctgggctgaagtttacttttgaactgtccagg-gaaaggtgtttgctTTGGTAAAGATGATTTACAAATTT------CCTGAGAATGTGAG--AGGTCAAACTTACAAAAAGAAAACAACTGCCTAACAGTATCTTTTTGTTCACAGACCCCAAAAATGCTCATC----AAGACCAACATTTATCCACCAAGGCACCCTGGCAGTGTGTTATT-ATCATTAGCTTGAGGCCACTACGTGGGC----------------CATGTGTTTTTAAATAGCAGAGAAATCAGAGTTTTGAATAACTACCCAGACCCTGGCTGCCTCCCTCAAATC------ACCGGTGAAGGTTTACTGTCAAAACCCAGGCACAGGGTCCGCTCTTCGAGTGAGCTGCCCTGCCAGGAACCCGACACTGTGCCCCTACGCACCCCTCTTGGCTGTGTTTCCAAAGTCAGCCCGGGCCGGGGTGCAATCC----TCTGCCTTCTGTGAAGTAGTGTTTACTCTATGCCCAGCGGAGTTGAGCACCAGATCAGCTGAATGTCTCCAGTGGGGATCTCGGAGCAGGGGCAAAGTGGTCTGTTGATTTCACTGGG--TTCCTAAGGCAGGTTATGGGTAACAGGGCTGCTGGGCTGGCCGGGCAGTGGCTCCCGTGGTTCCTCCATGTCCCACTCTGCAGGGCTTTCAATACACAGGT----AACTGGTTGCCAGCGCTTTCTGCATGATTGTCTCAAAGACACTGGATGCCAGAAAAACAATCA-GAAAACTGAGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223791199 1002 - 227556264 cctgcctaagtctcccaagtagc-tgggactgcaggctcatgccaccacacctagctatttattttttta-----ttttgtagagatgcgaccttgctgtgttgcccag-gctggtctagagctcctggtcttgagatcctcttgccttggtctcccaaagtgttgggatgacaggtatgagctgcc---acgcctagccAAACTTTTCTTACTAGACTACAA---------TATGCAGTTCAGTGATTCGTAATGCAAGATAATTATATGCAAgataattatagtgtctgggctgaagtttacttttgaactgtccagg-gaaaggtgtttgctTTGGTAAAGATGATTTACAAATTT------CCTGAGAATGTGAG--AGGTCAAACTTACAAAAAGAAAACAACTGCCTAACAGTATCTTTTTGTTCACAGACCCCAAAAATGCTCATC----AAGACCAACATTTATCCACCAAGGCACCCTGGCAGTGTGTTATT-ATCATTAGCTTGAGGCCACTACGTGGGC----------------CATGTGTTTTTAAATAGCAGAGAAATCAGAGTTTTGAATAACTACCCAGACCCTGGCTGCCTCCCTCAAATC------ACCGGTGAAGGTTTACTGTCAAAACCCAGGCACAGTGTCCGCTCTTCGAGTGAGCTGCCCTGCCAGGAACCCGACACTGTGCCCCTACGCACCCCTCTTGGCTGTGTTTCCAAAGTCAGCCCGGGCCGGGGTGCAATCC----TCTGCCTTCTGTGAAGTAGTGTTTACTCTATGCCCAGCGGAGTTGAGCACCAGATCAGCTGAATGTCTCCAGTGGGGATCTCGGAGCAGGGGCAAAGTGGTCTGTTGATTTCACTGGG--TTCCTAAGGCAGGTTATGGGTAACAGGGCTGCTGGGCTGGCCGGGCAGTGGCTCCCGTGGTTCCTCCATGTCCCGCTCTGCAGGGCTTTCAATACACAGGT----AACTGGTTGCCAGCGCTTTCTGCATGATTGTCTCAAAGACACTGGATGCCAGAAAAACAATCA-GAAAACTGAGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16841624 988 - 220367699 cctgcctaagtctcccaagtagc-tgggactgcaggctcatgccaccacacctagctatttattttttta----tttttgtacagatgcgaccttgctatgttgcccag-gctggtctagaactcctggtcttgagatcctcttgccttggtctcccaaagtgttgggatgacaggtatgagctgCC---ACGCCTAGCCAAACTTTTCTTACTAGACTACAA---------TATACAGTTCAGTGATTCGTA---------------ATGCAAGATAATTATAGTGTCTGGGCTGAAGTTTACTTTTGAACTGTCCAGG-GAAAGGTGTTTGCTTTGGTAAAGATGATTTACAAATGT------CCTGAGAATGTGAG--AGGTCaaacttacaaaaagaaaacaactgccTAACAGTATCTTTTTGTTCATAGACCCCAAAAATGCTCATC----AAGACCAACATTTATCCACCAAGGCACCCTGGCAGTGTGTTATT-ATCATTAGCTTGAGGCCACTACGTGGGC----------------CATGTGTTTTTAAATAGCAGAGAAATCAGAGTTTTGAATAACTACGCAGACCCTGGCTGCCTCCCTCAAATC------ACCGGTGAAGGTTTACTGTCAAAACCCAGGCACAGTGTCCGCTCTTCGAGTGAGCTGCCCTGCCAGGAACCCGACACTGTGCCCCTACGCACCCTTCTTGGCTGTGTTTCCAAAGTCAGCCTGGGCCGGGGTGCAATCC----TCTGCCTTCTGTGAAGTAGTGTTTACTCTATGCCCAGCAGAGTTGAGCACCAGATCAGCTGAATGTCTCCAGTGGGGATCTCGGAGCAGGGGCAAAGTGGTCTGTTGATTTCACTGGG--TTCCTAAGGCAGGTTATGGGTAACAGGGCTGCTGGGCTGGCCGGGCAGTGGCTCCCGTGGTTCCTCCATGTCCCGCTCTGCAGGGCTTTCAATACACAGGT----AACTGGTTGCCAGTGCTTTCTGCATGATTGTCTCAAAGACACTGGATGCcagaaaaacaatca-gaaaactgAGTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82641147 992 + 85787240 cctgcctacgtctcccaagtagc-tgggactgcaggctcataccaccacacctagctatttatttatttatttatttttgtagagatgggaccttgctatgttgcccag-gctggtctagaactcctggtcttgagatcctcttgccttggtctcccaaagtgttgggatgacaggtatgcgctacc---acgcctagccAAACTTTTCTTAATAAACTACAA---------TATGCAGttcagtgattcgta---------------attcaagataattatagtgtctgggctgaagtttacttttgaactgtccagg-gaaaggtgtttgctTTGGTAAAGATAATTTACAAAAGT------CCTGAGAATGTGAG--AGGTCAAACTTACAAAAAGAAAACAACTGCCTAACAGTATCTTTTTGTTCACAGACCTCAAAAATGCTCATC----AAGACCAACATTTATCCACCAAGGCACCCTGGCAGTGTGTTATT-ATCATTAGCTTGAGGCCACTCTATGAGC----------------CATGTGTTTTTAAATAGCAGAGAAATCAGACTTTTGAATAACTACCCAGACCCTGGCTGTCTCCCTCAAATC------ACCGGTGAAGGTTTACTGTCAAAACCCAGGCACCGTGCCCGCTCTTTGAGTGAGCTGCCCTGCCAGGAACCCGACACTATGCCCCTACAGACCCCTCTTGGCTGTGTTTCTAAAGTCAGCCTGGGCCGGGGTGCAATCC----TCTGCCCTCTGTGAAGCAGTGTTTACTCTATGCCCAGCAGAGTTGAGCACCAGATCAGCTGAATGTCTCCAGTGGGGATCTCGGAGCAGGGGCAAAGCGGTCTGTTGATTTCACTGGG--TTCCTAAGGCAGGTTGTGGGTAACAGAGCTGCTGGGCTGGCCGGGCAGTGGCTTCCGTGGTTCCTCCATGTCCCACTCTGCAGGGCTTTCAATACACAGGT----AACTGGTTGCCAGCGCTTTCTGCATGATTGTCTCAAAGACACTGGATGCCAGAAAAACAATCA-GAAAACTGAGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14352879 960 - 49578535 cctgcctcagtttcccaagtagc-tgggactacaggctcctgccaccacaccttgctatttaatt-ttta----tttttgtagagatgggaccttactatgctgtccag-gctggtctagaactcc--------------------------ctcccctgggcttgggatgacaagtgtgagccccc---acgcccagccAGACTTTTCTTAATAGAGTACAG---------TATGCatttcagtgactcata---------------attcaaggtaattacagtgtctgggcggaagtttacttttgaacaatccagg-gaaaggagtccgctTTGGTAAAGATGATTTACGAATGTGATTGCCATGAGCAGGTGAG--GGGCTGAACTTACAAAAGGAAAGCAACTGCCTCGCAGTGTCTTTTTGTTCACAGACCTTAAAAATGCTCCTCCAGAAACACCAGCATCGATCCACCCAAGC-CCCGGGCGGTGTGTTCTT-ATCATTAGCTTGAGTCCACTATAGGGGC----------------CATGT-TTTTTAAATAGCATGGAAATGAGACTTTTGAATAAC----CAGACCCTGGCTGCCTCCCTCAAATCGTGCCTGTCAGTCAAGGTTTGCTGTTAAAACCCAGGCATGGTGCGTGGTCTCTGAGTGAGCTGCACTGCCAGGAACCCAAC-CTGTGCCTCTCCAGACCCCACT-GGCTGCGTTTGCAGAATCAGCA-GGGCCGTGGGGCAGTTC----TCCGTCCTCGGTGAAGTGGTGTCTACTCTATACCTGACAGAGTTGAGTAC--GATCAGCTGCATGTTTCCAGTGGGGATCCTGAACCAGGGGCAAAGTGGTCTGCTGATTTCACTGGG--TTCCCAAGGCAAGTTGTGGGTAAC--GGCTGTCGGGCTGGCCAGGCAGTGGCTTCTGTGGTTCCTCCGTGCCCATCTCTGTAGGGCTTTCAATACACAGGC----ATCTGGCT----GCGCCTTCTGCATGATTGTCTCAGAGACACTGGATGCCAGAAAAGCAATCA-GAAAACTGAGTT i calJac3.chr19 C 0 I 309 s canFam3.chr7 36454445 817 + 80974532 --------------------------------------ACTGCCCCCGCCCCCGGC--TCTGCCTtttta----ttttc----aagtaggcccc-------atgcccaacgtggggcttgaactcacgggccttaggtc--------------------agtgt---gccgaca-----gagccaaccaagtgcc---ccTGACCTTGTATAGCAGAGTTCAAGTTCCCCAGTATGGAATTCGCTGATTTAGA---------------GTCCCAGACAATGGCGGCATCTGGCCTGCA------CTTTGAACCATCCAGGAGGAAAGGATTTGCCTGGGGGAGGATGATGGACCAATGTAATTGCCAGAGGAAGGTGAGAAAGGGGAGACTTTAAACAGAAAGACAACTGTTTTGTAGCATCTTTTCGTTCACCAGCTCTACAGAGGCTCTTCATGAAAGGCCAGGGTTTATGCATCTA-GCACcctggtgatatgttattaatcattagcttgagtccactgtatggatctggaggaaacaaaggcatgt-ttttaaaatagtctataaatcagacctttGAAGAACTAGGCAGATTCT-ACTACCT----------------GTTGGTGATGCTCCTCTGTGAGAACCTCGGTCCTGGCCCTGCTCTGTGGG-GAGTGGCACTGCCAGG-------------------------CCCCCTGGGCGAGGTCTTCAAAGCCAGCACCAGCCTTGGTGCAGTGCTCTATCTACCCTTTGCCAAGTCTCATGTACTCTACGC--------GCTGGGGAGCATCTCAGGT--------------GGGATTTTGGACTATGGGCGACGTGGTCCATTGACCTTGCTGGGCTTTCCCA--------TGTGAGCCACAGGGTT----------------------------------------------------GGGCTTTCGAAACACAGGC----AGCTGGCCCCCAGGGCTCTCTCT-------------GGACACTGAGTGCCAGGAAAACAAACACTAGCCCTGAGTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I a score=352074.000000 s hg38.chr1_KI270759v1_alt 307521 109 + 425601 AAGAGTCTAACC-----CTG--GACTGGAAATTGTAAAGCTCATTGAGTAAAGCAGAGATGGTCCGCAAAGCTGTTGTAGATGAAGCCTAGAATGAAGACATCCAAGTAGgaccag s panTro4.chr1 225064320 109 + 228333871 AAGAGTCTAACC-----CTG--GACTGGAAATTGTAAAGCTCATTGACTAAAGCAGAGACGGTCCGCAAAGCTGTTGTAGATGAAGCCTAGAATTAAGACATCCAAGTAGgaccag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226433224 100 - 229942017 AAGAGTCTAACC-----CTG--GACTGGAAATTGTAAAGCTCATTGACTAAAGCAGAGACAGTCCACAAAGCTGTTCTAGATGAAGCCTAGAATT---------AAGTAGgaccag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140317204 109 - 143122389 AAGAGTCTAACC-----CTG--GACTGGAAATTGTAAAGCTAATTGACTAAAGCAGAGACGGTCGACAAAGCTGTTCTAGATGAAGCCTAGAATTAAGACATCCAAGTAGgaccag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17028307 109 - 229590362 AAGAGTCTAACC-----CTG--GACTGGAAGTTGTAAAGCTAATTGACTAAAGCGGAGACAGTCCACCAAGCTGTTCTAGATGAAGCCTAGAATTAAGACATCCAAGTAGgaccag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223792201 109 - 227556264 AAGAGTCTAACC-----CTG--GACTGGAAGTTGTAAAGCTAATTGACTAAAGCGGAGACAGTCCACCAAGCTGTTCTAGATGAAACCTAGAATTAAGACATCCAAGTAGgaccag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16842612 109 - 220367699 AAGAGTCTAACC-----CTG--GACTGGAAGTTGTAAAGCTAATTGACTAAAGCGGAGACAGTCCACCAAGCTGTTCTAGATGAAGCCTAGAATTAAGACATCCAAGTAggaccag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82642139 109 + 85787240 AAGAGTCTAACC-----CTG--GACTGGAAGTTGTAAAGCTAATTGACTAAAGCAGAGACAGTCCACAAAGCTGTTCTAGATGAAGCCTAGAATTAAGACATCCAAGTAGgaccag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14354148 112 - 49578535 aaGAGTCTAACCCTGGTCTG--GACTGGAAATTGTAAAGCTAATTGACTAAAGCAGAGA--GGTTGCAAAGCTGTTCTAGATAAAGCCTGGAATTAAAGCCTCCAACTGGGAAcag i calJac3.chr19 I 309 C 0 s canFam3.chr7 36455262 110 + 80974532 AGGAGACTAACC-----CAGGTGCCTGGAAATTGTGAAGCTAATTGACTAACACAGAGGCAATCAACAAACTAATTCTGGGTGGAGCCT-GAAGTCAGGCATCCACCTGGGATCAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I a score=365749.000000 s hg38.chr1_KI270759v1_alt 307630 128 + 425601 gcgtggtggctcacacctgtaatcccagcactttggaaggccaaggtggttagatcacttgaggtcagcagtttgagaccagcctggccaacatggagaaaccccgtctctactaaaaat--aaaaaaat s panTro4.chr1 225064429 128 + 228333871 gcgtggtggctcacacctgtaatcccagcactttggaaggccaaggtgggtagatcacttgaggtcagcagtttgagaccagcctggccaacatggagaaaccccgtctctactaaaaat--aaaaaaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226433324 130 - 229942017 gcacggtggctcacacctgtaatctcagcactttggaaggccgcggcgggtggatcacttgaggtcaggagtttgagacaagcctggccaacatagagaaacctcgtctctactaaaaataaaaaaaaat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140317313 128 - 143122389 gcacagtggctcacacctgtaatcccaacactttggaaggccgaggcaggcggatcacttgaggtcaggagtttgagaccagcctggccaacatggagaaaccccatctctactaaaaat--aaaaaaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17028416 128 - 229590362 gcatggtggctcacacctgtaatcccagcacgttggaaggcagagaggggcagatcacttgaggtcaggagtttgagaccagcctggccaatgtggagaaaccccgactctactaaaaat--aaaaaaat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223792310 128 - 227556264 gcatggtggctcacacctgtaatcccagcacgttggaaggccgagaggggcagatcacttgaggtcaggagtttgagaccagcctggccaatgtggagaaaccccgactctactaaaaat--aaaaaaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16842721 128 - 220367699 ccatggtggctcacacctgtaatcccagcacgttggaaggccgagaggggcagatcacttgaggtcaggagtttgagaccagcctggccaatgtggagaaaccccgactctactaaaaat--aaaaaaat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82642248 128 + 85787240 gcatggtggctcacacctgtaattccagcacgctggaaggccgagaggggcggatcgcttgaggtcaggagtttgagaccagcctggccaacatggagaaaccccgactctactaaaaat--aaaaaaat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14354260 128 - 49578535 gcacagtggctcacacctataatcccagcactctggggggctgaggcaggtggatcacttgaggtcaggagtttgagacctgcctggtcaacatggtgaaacctcatctctactaaaatt--aactaaat i calJac3.chr19 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I e canFam3.chr7 36455372 0 + 80974532 C a score=127761.000000 s hg38.chr1_KI270759v1_alt 307758 47 + 425601 tagctgggcgtggtggcacacacctcccagctagttgggggtctgag s panTro4.chr1 225064557 47 + 228333871 tagctgggcgtggtggcacacacctcccagctagttgggggtctgag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226433454 47 - 229942017 tagccgggcgtggtggcacacacctcccagctagttgggagtctgag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140317441 47 - 143122389 tagccaggcttggtggcacacacctcccagctagttgggagtctgag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17028544 47 - 229590362 tagccgggcatggtggcacacatctcccagttagttgggaggctgag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223792438 47 - 227556264 tagccgggcatggtggcacacatctcccagttagttgggaggctgag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16842849 47 - 220367699 tagccgggcatggtggcacacatctcccagttagttgggaggctgag i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82642376 47 + 85787240 tagccggacgtggtggcgcacatctcccagctagttgggaggctgag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14354388 38 - 49578535 ---------gtgttgatgcccacctcccagctactcaggaggctgag i calJac3.chr19 C 0 C 0 s canFam3.chr7 36455372 33 + 80974532 TGGATGGGC--------------TTCCCAATTTCTCTGCAGTTTGAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I a score=489821.000000 s hg38.chr1_KI270759v1_alt 307805 167 + 425601 gcaggagaattgcttgaacccaggaggcggaggttgcagtgagcccagatcgtgccactgcactccagcctgggtgacagagcaaggctctgtctcagaaaataaaaataaaaaGACTTCCAGCTGGGATCTATGGACAGGCTCCCCCTGATTT-CCCCTAAGCCTCC s panTro4.chr1 225064604 168 + 228333871 gcaggagaattgcttgaacccaggaggcggaggttgcagtgagcccagatcgtgccactgcactccagcctgggtgacagagcaaggctctgtctcagaaaataaaaataaaaaGACTTCCAGCTGGGATCTATGGACAGGCTCCCCCTGATTTCCCCCTAAGCCTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226433501 157 - 229942017 gcaggagaattacttgaacccaggaggcggaggttgcaatgagcccagatcgtgccactgcactccagcctgggc-----------gctctgtctcagaaaataaaaataaaGGGACATCCAGCTGGGATCTACGGACAGGCTCCCCCTGATTTCTCCCTAAGCCTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140317488 168 - 143122389 gcaggagaattgcttgaacccaggaggcggaggttgcaatgagcccagatcgtgccactgcactccagcctgggtgacagagcaaggctgtgtctcagaaaataaaagtaaaaaGACATCCAGCTGGGATCTATGGACAGGCTCCCCCTGATTTCTCCCTAAGCCTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17028591 168 - 229590362 gcaggagaattgctttaacctgggaggcggaggttgcagtgagcccagatcgtgccactgcactccagcctgggtgacagagcaagcctctgtctcagaaaataaaaataaaaTGACATCCAGCTGGGATCTACGGACAGGATCCCCCTGCTTTCTCCCTAAGCCTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223792485 168 - 227556264 gcaggagaattgctttaacctgggaggcggaggttgcagtgagcccagatcgtgccactgcactccagcctgggtgacagagcaagcctctgtctcagaaaataaaaataaaaTGACATCCAGCTGGGATCTACGGACAGGATCCCCCTGCTTTCTCCCTAAGCCTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16842896 168 - 220367699 gcaggagaattgctttaacctgggaggcggaggttgcagtgagcccagatcgtgccactgcactccagcctgggtgacagagcaagcctctgtctcagaaaataaaaataaaatgacatccaGCTGGGATCTACGGACAGGATCCCCCTGCTTTCTCCCTAAGCCTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82642423 168 + 85787240 gcaggcgaattgcatgaacctgggaggtggaggttgcagtgagcccaggtcgggccactgcactccagcctgggtgacagagcaagcctctgtctcagaaaatgaaaataaaaTGACATCCAGCTGGGATCTATGGACAGGATCCCCCTGATTTCTCCCTAAGCCTCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14354426 165 - 49578535 gcaggagaatcacttgaacagggggggcggaggttgctgtgagcccagatcatgccactgcactccagcctgggtaacagagcaagactctgtctcagaaaataaa---aaaaaGACATCCAGCTGGGACCTGTGGACAGGCTCCCCCCGATTCTTCCCTAAGCCTAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I e canFam3.chr7 36455405 0 + 80974532 C a score=1390776.000000 s hg38.chr1_KI270759v1_alt 307972 465 + 425601 TCGTGGCTCAAAAGACCTGGACAACAGTACTCCTGGGGAGAGAGCTCTTTGCGGGCTTCTGCTGTCCCCAGGCAAAAGCGCCTCCCTTCCCCCACCTCGGTG-----------------------CCTCTCTTCCTACTCTTT-AGTTACTGttgttaaaatccaggtttattgcagtataaggtacattcaccaaaacatcactttgatg---tgtctttagatgagttttggccaatctatacagtcatgtagccaccaccattatcaaaatagagcataaggcta----------aagttcc--ctcttgccgtttgtcccttcccctgacctctagcccctggcaaccacggatctgattgttgtcc---tggttttgcgtttatccaggatatcgtgggaatggactcgtgtggcccagatgtggccttttgtgtctggcttctttcacgtagtgtcctaatgcatttgagactcccccatgctgcagcacgcgtcTCTTGT s panTro4.chr1 225064772 467 + 228333871 TCGTGGCTCAAAAGACCTGGACAACAGTACTCCTGGGGAGAGAGCTC-TTGAGGACTTCTGCTGTCCCCAGGCAAAAGCGCCTCCCTTCCCCCACCTCAGTG-----------------------CCTCTCTTCCTACTCTTT-AGTTACTGttgttaaaatccaggtttattgcagtataaggtacattcaccaaaacatcactttgatgttttgtctttaaatgagttttggccaatctatacagtcatgtagccaccaccattatcaaaatagagcataaggcta----------aagtgcc--ctcttgccgtttgtcccttcccctgacctctagcccctggcaaccacggatctgactgttgtcc---tggttttgcgtttatccaggatatcgtgggaatggactcgtgtggcccagatgtggccttttgtgtctggcttctttcacgtagtgtcctaatgcatttgagactcccccatgctgcagcacgcgtcTCTTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226433658 461 - 229942017 TCGTGGTTCAAAAGACCTGGACAACACTACTCCTGGGGAGAGAGCTC-TTGCGGGCTTCTGTTGCCTCCAGGCAAAAGCTCCTCCCTTCCCCCACCTCAGTG-----------------------CCTCTCTTCCTACTCCTT-AGTTACTGttgttaaaatccaggtttattgcagtatcatgtacattcacaaaaacatcacttttatg---tgtctttagatgagttttggccaacctatacagtcatgtagccaccaccattatcaaaatagagcacgaggctg----------aagttcc--ctcttgccctttgtcccttcccctgacctctagcccctggcaaccatggatctgattgttgtcc---tggttttgcgtttatccaggatattgtgggaatggactcatgtggcccggacgtggccttttgtgtctggcttctttcacgtagcg---taacgcatttgagattcccccgtgctgcagcacgcgtctcttgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140317656 462 - 143122389 TCGTGGCTCAAAAGACCTGGACAACAGTGCTCCTGGGGAGAGAGCTC-TTGTGGGCTTCTGTTGCCCTCAAGAAAAAGCTCCTCCCTTCCCCCACCTCAGTG-----------------------CCTCTCTTCCTACTCCTTAAGTTATTGttgttaaaatccaggtttattgcagtataatttacattcactaaaacatcatttttatg---tgtctttagatgagttttggccaatctatacagtcatgtagccaccaccattatcaaaatagagcacaaggctg----------aagttcc--ctcttgccctttgtccctttccctgacctctagaccctggcaaccatggatctgatgatcgtcc---tggttttgagtttatccaggatatcgtgggagtggactcatgtggcccggacgtggcctcttgtgtctggcttctttcacgtagca---taacgcatttgagattcctccatgctgcagcacgCGCGTCTTGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17028759 460 - 229590362 TCGTGGCTCAAAAGACCTGGAAAACAGTACTCCTGGGGGGAGAGCTC-TTGCAGGCTCCTGTTGCCCCCAAGCAAAAGCTCCTCCC-TCCCCCACCGCAGTG-----------------------ACTCTCTTCCTACTCCTT-AGTTATTGttgttaaaatccaggtttattgcagtataatttacattcactaaaacatcacttttgtg---tgtctttagatgagttttggcccatctatacagtcatgtggccaccaccattatacaaatagagcacaaggcta----------aagttcc--ctcttgccctttgtcccttcccctgacctctagcccctggcaaccatggatctgattgttgttc---tggttttgcgtttatccaggatatcacaggaatggactcttgtggcccggacacggccttttgtgtctggcttgtttcacgtagcg---taacgcatttgagattcctccatgctgCAGCTCACGTCTCTTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223792653 460 - 227556264 TCGTGGCTCAAAAGACCTGGAAAACAGTACTCCTGGGGGGAGAGCTC-TTGCAGGCTCCTGTTGCCCCCAAGCAAAAGCTCCTCCC-TCCCCCACCGCAGTG-----------------------ACTCTCTTCCTACTCCTT-AGTTATTGttgttaaaatccaggtttattgcagtataatttacattcactaaaacatcacttttgtg---tgtctttagatgagttttggcccatctatacagtcatgtggccaccaccattatacaaatagagcacaaggcta----------aagttcc--ctcttgccctttgtcccttcccctgacctctagcccctggcaaccatggatctgattgttgttc---tggttttgcgtttatccaggatatcacaggaatggactcttgtggcccggacacggccttttgtgtctggcttgtttcacgtagcg---taacgcatttgagattcctccatgctgCAGCTCACGTCTCTTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16843064 460 - 220367699 TCGTGGCTCAAAAGACCTGGAAAACAGTACTCCTGCGGGGAGAGCTC-TTGCAGGCTCCTGTTGCCCCCAAGCAAaagctcctccc-tcccccacctcagtG-----------------------ACTCTCTTCCTACTcctt-agttattgttgttaaaatCTAGGTTTATTGCAGTATAATTTACATTCACTAAAACATCACTTTTGTG---TGTCTTTAGATGAGTTTTGGCCCATCTATACAGTCATGTGGCCACCACCATTATACAAATAGAGCACGAGGCTA----------AAGTTCC--CTCTTGCCCTTTGTCCCTTCCCCTGAcctctagcccctggcaaccatggATCTGATTGTTGTTC---TGGTTTTGCGTTTATCCAGGATATCACAGGAATGGACTCTTGTGGCCCGGacatggccttttgtgtctggcttgtttcacgtAGTG---TAACGCATTTGAGATTCCTCCATGCTGCAGCACACGTCTCTTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82642591 460 + 85787240 TCGTGGCTCAAAAGACCTGGAAAACAGTACTCCTGGGGAGAGAGCTC-TTGCGGGCTTCTGTTGCCCCCAAGCAAAATCTCCTCCC-TCCCCCACCTCAGTG-----------------------ACTCTCTTCCTACTCCTT-AGTTATTGttgttaaaatccaggtttattgcagtataatttacattcactagaacatcacttttatg---tgtctttagatgagttttggcccatctatacagtcatgtggccaccaccattataaaaatagagcacgaggcta----------aagttcc--ctcttgccctttgtcccttcccctgacctctagcccctggcaaccacggatctgattgttgctc---tggttttgcgtttatccaggatatcacaggaatggactcttgtggcccggacatggccttttgtgtctggcttgtttcacgtagcg---taacgcatttgagattcctccatgctgcagcaCACGTCTCTTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14354591 412 - 49578535 TTGTGGCTCAAAGGACTTGGAAAACAGTATTCCTGGAGAGAGAGCTA-TGGGAG--------------------------------------CAACTCAGCA-----------------------CCTCTCTTCCTACTCCTT-AGTCA---ttgtttaaatccaggtttattgcagtataatttacgttcagtgaaacatcacttttatg---tgtctttagatgagttttggccaatccatatagtcacgtagccactgccatcatcaacatagagaatgaggcta----------aatttcc--ctctcgccctctgtcccttctccccacctctagcccctggcatccacagatctgatcattgtcc---tggttttgcgcttatccggaatatcctaggaatgggct--------ccggatgtggccttttgtgtctgtgtgctttcacgtagcg---tgatgcatgtgagatttgctcatgctgCAGCTCACGTCTGATGT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36455405 460 + 80974532 TTGTTGCCCAAA-GACCTAGAAACCAGTATCCC---GGAGAGAGTTC-TTA-GGGCTTCTCTTGCCACCAGG-GAAAGTTCTGCCC-TTCCTTGTCTCAGCTCATTTGCTGGCCCAGTTGTATGCCCTCAGTTCCTCCTCCGT-AATTCTTGttattttaattcaggtttaacgaagtctaatgtacattcagaaataccccttttttgtg---tgttgtttgatgagttttggcaaatctgtacagttgtgtaactaccgccaccttccagacacagaaccaaaccatcagcacaggaagcccccactctggccactt---cctgccctctacctctggcccc---caacaactgacccgacttttttccttttagttttgc----atccagagcatcgtacgaatggagccacgtggtccccacgtggcctttggtgtccggcttctttcatttggcc---taatgcctctgagattcttcca---------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I a score=377024.000000 s hg38.chr1_KI270759v1_alt 308437 158 + 425601 TTCTTCTGGTTCCTGCTGCCTGTTCTGCCTGCTCCTTTAGtttttttgtttgtttgagatgaagtctcactcactctgttgcccaggctggagtacagtggcgtgatctcggctcactgcaacctccgcctcccgagttcaagcgattctcctgcctc s panTro4.chr1 225065239 158 + 228333871 TTCTTCTGGTTCCTGCTGCCTGCTCTGCCTGCTCCTTTAGtttttttgtttgtttgagatgaagtctcactcactctgttgcccaggctggagtacagtggcgtgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226434119 158 - 229942017 ttgttcTGGTTCCTGCTGCCTGCTCTGCCTGCTCCTTTAGtttttttgtttgtttgagatgaagtctcactcactctgttgcccaggctggagtgcagtggcgcgatctcggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140318118 149 - 143122389 TTCTTCTGGTTCCTG---------CTGCCTGCTCCTTTAGtttttttgtttgtttgagacaaagtctcactcactctgttgcccaggccagagtgcagtggcacgatctcggctcactgcaacctccgcctcccgggttcaagtgattctcctgcctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17029219 158 - 229590362 TTCTTCTGGTTTCTGCTGCCTGCTCTGCCTGCTCCTTTAGtttttttgtttgcttgagacgaagtctcactcactctgtcgcccaggctggagtgcagtggcctgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223793113 158 - 227556264 TTCTTCTGGTTCCTGCTGCCTGCTCTGCCTGCTCCTTTAGtttttttgtttgcttgagacgaagtctcactcactctgtcgcccaggctggagtgcagtggcctgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16843524 158 - 220367699 TTCTTCTGGTTCCTGCTGCCTGCTCTGCCTGCtcctttagtttttttgtttgcttgagacgaagtctcactcactctgtcgcccaggctggagtgcagtggcatgatctcggctcactgcaacctccgcctcctgggttcaagcgattctcctgcctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82643051 154 + 85787240 TTCTTCTGGTTCCTGCTGCCTGCTCTGCCTGCTCCTTTAGtttttttgtttgcttgagatgaagt----cttgctctgtcgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctc i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36455865 85 + 80974532 atgttct---------tgcatgtactggttgtttgcttatttttcttAGTT------------------------------TCCA---TGGAGCCCAGAGACTTG-----------------CCTCTACCTC--------------TCCTCCTACTCC i canFam3.chr7 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I e calJac3.chr19 14355003 0 - 49578535 C a score=370251.000000 s hg38.chr1_KI270759v1_alt 308595 156 + 425601 agcctcctgagtagctgggaatacaggtgcccaccaccatgtctggctaatttttgtacgttaagtagagacggagtttcaccatattggccaggatggtcttgaactcctgacctcgtgatccacccgcctcagcctcccaaagtgttgggatta s panTro4.chr1 225065397 156 + 228333871 agcctcctgagtagctgggaatacaggtgcccaccaccatgtctggctaatttttgtacgttaagtagagacggagtttcaccatattggccaggatggtcttgaactcctgacctcgtgatccacccgcctcagcctcccaaagtgttgggatta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226434277 156 - 229942017 agcctcccgagtagctgggaatacaggtgcccaccaccatgtctggctaatttttgtactttaactagagacggagtttcatcatattggccagcatggtctcgagctcctgacctcatgatccacccacctcagcttcccaaagtgttgggatta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140318267 156 - 143122389 agccgaccgagtagctgggaatacaggtgcccaccaccacgtctggctaatttttgtacgttaagtagagacggagtttcaccatattggccaggatggtcttggacttctgacctcgtgatccacccgcctcggcctcccaaaatgttgggatta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17029377 156 - 229590362 agcctcccatgtagctgggaatacaggtgcccaccaccacgtctggctaatttttgtactttaagcagagacagagtttcaccatattggccaggatggtctcgaactcctgacctcatgatctgcccgccttggcttcccaaggtgttgggatta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223793271 156 - 227556264 agcctcccatgtagctgggaatacaggtgcccaccaccacgtctggctaatttttgtactttaagcagagacagagtttcaccatattggccaggatggtctcgaactcctgacctcatgatctgcccgccttggcttcccaaggtgttgggatta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16843682 156 - 220367699 agcctcccatgtagctgggaatacaggtgcccaccaccacgtctggctaatttttggactttaagcagagacagagtttcaccatattgtccaggatggtctcgaactcctgacctcatgatctgcccgccttggcttcccaaggtgttgggatta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82643205 156 + 85787240 agcctcccatgtagctgggaatacaggtgcccaccaccacgtctggctaatttttgtactttaagtagagacagagtctcaccatattggccaggatggtctcgaactcctgacctcatgatctgcccaccttggcttcccaaagtgttgggatta i chlSab2.chr25 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I e canFam3.chr7 36455950 0 + 80974532 C e calJac3.chr19 14355003 0 - 49578535 C a score=66440.000000 s hg38.chr1_KI270759v1_alt 308751 27 + 425601 caggcgtgagccaccgcacctggccTC s panTro4.chr1 225065553 27 + 228333871 caggcgtgagccaccgcacctggccTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226434433 27 - 229942017 caggtgtgagccaccgcaccccgccTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140318423 27 - 143122389 caggcatgagccaccgcacccggccTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17029533 27 - 229590362 caggcgtgagccaccgcgcccggccTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223793427 27 - 227556264 caggcgtgagccaccgcgcccggccTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16843838 27 - 220367699 caggcgtgagccaccacgcccggcctc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82643361 27 + 85787240 caggtgtgagccaccacgcccggccTC i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36455950 15 + 80974532 CAGGCCTGAG------------ATCTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I e calJac3.chr19 14355003 0 - 49578535 C a score=19461.000000 s hg38.chr1_KI270759v1_alt 308778 7 + 425601 TCCTTCA s panTro4.chr1 225065580 7 + 228333871 TCCTTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226434460 7 - 229942017 TCCTTTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140318450 7 - 143122389 TCCTTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17029560 7 - 229590362 TCCTTTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223793454 7 - 227556264 TCCTTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16843865 7 - 220367699 tcctTTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82643388 7 + 85787240 TCCTTTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14355003 7 - 49578535 TCCCTGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36455965 7 + 80974532 ACCTGCA i canFam3.chr7 C 0 C 0 e mm10.chr1 178874206 1565 + 195471971 I a score=973671.000000 s hg38.chr1_KI270759v1_alt 308785 360 + 425601 GTTTTGACTGGGCCTGGAGGCTTGGTT-CCTACCCTACCACCAGGACA--GAATGAAAATATCCA-----CAGCTGGGGCTGGAGTTCCTCTAAC-------------------------------TGGGGCTGCTTTTTATGGCTCTGAAAATCAGCCCTGAGCTGCCTCCAGTGGCTGCTG-TGAAGAACCGAGAGGTTCTGGTCCTCACTTACAGCGGGCGAGGCGCCCCAGGGAAGTGGCCCATTAGCTTGAGGGCAGCTCTCTC--GACAGCCCATGATGGTGAGCAAAG-----------------------------------------------------TCTCACTGGAGAG-GAGCCGAG----------GATAGTGAACGGGAATCTCTC--GGGAGATGTATTCTTGGTAACAGGCTCACACCATGTAGAGCGCTTCCGTTTAGAATCACGTTCTT s panTro4.chr1 225065587 360 + 228333871 GTTTTGACTGGGCCTGGAGGCTTGGTT-CCTACCCTACCACCAGGACA--GAATGAAAATATCCA-----CAGCTGGGGCTGGAGTTTCTCTAAC-------------------------------TGGGGCTGCTTTTTATGGCTCTGAAAATCAGCCCTGAGCTGCCTCCAGTGGCTGCTG-TGAAGAACCCAGAGGTTCTGGTCCTCACTTACAGTGGGCGAGGCGCCCCAGGGAAGTGGCCCATTAGCTTGAGGGCAGCTCTCTC--GACAGCTCATGATGGTGAGCAAAG-----------------------------------------------------TCTCACTGGAGAG-GAGCCGAG----------GATAGTGAACGGGAATCTCTC--GGGAGATGTATTCTTGGTAACAGGCTCACACCATGTAGAGCGCTTCCGTTTAGAATCACATTCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226434467 360 - 229942017 GTTTTGACTGGGCCTGGAGGCTTGGCT-CCTACCCTACCACCAGGACA--GAACGAAAATATCCA-----CAGCTGGGGCTGGAGTTCCTCTAAC-------------------------------TGGGGCTGCTTTTTATGGCTCTGAAAATCAGCCCTGAGCTGCCTCCAGTGGCTGCTG-TGAAGAACCTAGAGGTTCCGGTCCTCACTTGCAGCGGGCCGGGCGCCCCAGGGAGGTGGCCCATTAGCTCGAGGGCAGCTCTCTC--AACAGCCCATGATGGTGAGCAAAG-----------------------------------------------------TCTCACTGGAGAG-GAGCCGAG----------GATAGTGAACGGGAATCTCTC--GGGAGATGTATTCTTGGTAACAGGCTCACACCATGTAGAGCGCTTCCGTTTAGAATCACGTTCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140318457 360 - 143122389 GTTTTGACTGGGCCTGGAGGCTTGGTT-CCTACCCTACCACCAGGACA--GAACGCAAATATCCA-----CAGCTGGGGCTGGAGTGCCTCTAAC-------------------------------TGGGGCTGCTCTTTATGGCTCTGAAAAACAGCCCTGAGCTGCCTCCAGTGGCTGCTG-TGAAGAACCCAGAGGTTCTGGTCCTCACTTGCAGCGGGCGGGATGCCCCAGGGAGGTGGCCTATTAGCAGGAGGGCAGCTCTCTC--GACAGCCCATGACCGTGAGCAAAG-----------------------------------------------------TCTCACTGGAGGG-GAGCCCAG----------GGTAGTGGACGGGAATCTCTC--GGGAGATTTATTCTTGGTAACAGCCTCACAGCATGTAGAGTGCTTCCGTTTAGAATCACGTTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17029567 415 - 229590362 GTTTTGCCTGGGCCTGCAGGCTTGACTATCTACCCAGCCACCGGGACA--GAACGAAAATATCCG-----CAGCTGGGGCTGGAGTTGCTCTAA--------------------------------GGGGGCCGCTTTTTATGGCTCTGAAAATCAGCCCTGAGCTGCCTCCACTGGCTGCTG-TGACGAACCCAGAGGTTCCGGTCCTCACTTGCAGTGGGCGGGGCGCCCCAGGGAGGTGGCCTGTCAGCGCGAGGTCATCTCTCTCTTGGCAGCCAGTGATGGGGGGCAGAGTCTCACTGGAGAGGAGCTGAGGATGGTGAACGGGCATCTCTCGGGAGATTTACTCTCACTGGAGAG-GAGCTGAG----------GATGGTGAACGGGCATCTCTC--GGGAGATTTACTCTCGGTAACAGCCTCACACCATGTAGAGCGCTTCCGCTTAGAATAACGTTCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223793461 415 - 227556264 GTTTTGCCTGGGCCTGGAGGCTTGACTATCTACCCTGCCACCGGGACA--GAACGAAAATATCCG-----CAGCTGGGGCTGGAGTTGCTCTAA--------------------------------GGGGGCCGCTTTTTATGGCTCTGAAAATCAGCCCTGAGCTGCCTCCACTGGCTGCTG-TGACGAACCCAGAGGTTCCGGTCCTCACTTGCAGCGGGCGGGGCGCCCCAGAGAGGTGGCCTGTCAGCGCGAGGTCATCTCTCTCTTGGCAGCCAGTGATGGGGGGCAAAGTCTCACTGGAGAGGAGCTGAGGATGGTGAACGGGCATCTCTCGGGAGATTTACTCTCACTGGAGAG-GAGCTGAG----------GATGGTGAACGGGCATCTCTC--GGGAGATTTACTCTCGGTAACAGCCTCACACCATGTAGAGCGCTTCCGCTTAGAATAACGTTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16843872 362 - 220367699 GTTTTGCCTGGGCCTGGAGGCTTGACTATCTACCCTGCCACCGGGACA--GAACGAAAAAATCCG-----CAGCTGGGGCTGGAGTTGCTCTAA--------------------------------GGGGGCCGCTTTTTATGGCTCTGAAAATCAGCCCTGAGCTGCCTCCAGTGGCTGCTG-TGACGAACCCACAGGTTCCGGTCCTCACTTGCAGCGGGCGGGGCGCCCCAGGGAGGTGGCCTGTTAGCGCGAGGTCATCTCTCTCTTGGCAGTCCGTGATGGGGAGCAGAG-----------------------------------------------------TCTCACTGGAGAG-GAGCTGAG----------GATAGTGAACGGGAATCTCTT--GGGAGATTTACTCTCGGTAACAGCCTCACACCGTGTAGAGCGCTTCCGCTTAGAATAACGTTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82643395 343 + 85787240 GTTTTGCCTGGGCCTGGAGGCTTGACTGTCTACCCTACCACCAGGACA--GAATGAACAT-----------------------AGTTCCTCTAA--------------------------------GGGGGCCGCTTTTTATGGCTCTGAAAATCAGCCCTGAGCTGCCTCCAGTGGCTACTG-TGACGAACCCAGAGGTTCTGGTCCTCACTTGCAGTGGGCGGGGCGCCCCAGGGAGATGGCCTGTTAGCGCAAGGTCATCTCTCTCTTGACAGCC-GTGATGGGGAGCAAAG-----------------------------------------------------TCTCACTGGAGAG-GAGCTGAG----------GATGGTGAACGGGAATCTCTC--GGGAGAGTTATTCTCGGTAACAGCCTCACACCACGTAGAGTGCTTCCACTTAGAATCACGTTCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14355010 366 - 49578535 GTTTTGACTGGGCCTGGAGGCTTGGCT-CCTACCCTACCACCAGGACA--CAAGGAAAATATCCA-----CAGCTGGGGCTGCAGTTCCACTAAG-------------------------------TGGGGTTGCTCTTTATGGCTGTGATCATCAGCTCTGAGCTGCCTACAGTGGCAGCTG-TGGGGAACCCAGAGGTTCCGGTCCTCACATGCAGCAGGCTGGGTGCCCCAGGGAGGTGGCCCATTAGCAGGGGGCCAGATCTCTCTTGACAGCCCATGA------GCAAAG-----------------------------------------------------TCTGACTGGAGAG-GAGCAGAGTGAATAGGAATATAGTGAATGGGAATCTCTT--GGGAGATTTATTCTCAGTAACAGGCTCGCACCATGTAGAGCGCTTCCGTTTAGAATAACGttctt i calJac3.chr19 C 0 I 329 s mm10.chr1 178875771 365 + 195471971 GTTTTGATTGGCCCTGAGAGC-TGCCT-CCCATCC--CCACCAGGCTAATGAATGAAAACAGCTATCTAGTAGCTGGGG-----GTTCCACTAGCCAAGGACACCTGCACAGAATGGGAAAGCAGATGGAGCAGTTCCCCAGAAATCTAGAAATC----CTGA----CTGTCACTTGTCACTC-TGG--------GAGATCCCCCTCCTCACCTACACCA--------TCACCATGG--GTGCCATTATTAAGTAGGACCAGATCTCCCTGGACGGCCTGAGATGGTGAG---GG-----------------------------------------------------TTTGTCTCAGGAA-CAGCAAGA----------TGTATTGGATGGGAATCTTTTAAAGGACACGGATTCTCAAAGGAGAGATCGTGCCATGTCACGTACTTTCATTTAGCATCACAATCTT i mm10.chr1 I 1565 C 0 s canFam3.chr7 36455972 265 + 80974532 -------------------------------------GTTCCAGGACC--ACAGGAGGAC------------------------------------------------------------------CCAGGCTGTCTACCCTGGCT-----------------GCTCCCTGCACTGGCTGCTGCCCAGGGGTCTAGGGATATTGG-CCTCACT-----------GGGCACCCCA-GGAGGCATACCCTCAGC---AGCCCAGACCTCTCTTGTAA--CCAGCACAATCATAAAGG-----------------------------------------------------TCTGACTGTGGGGCGAGCAAAA----------TGGCTTGAATGGGAAATTTTCAGGGGAGATTGGTTCTCAATGATGGGCTCACCCCATGTACAGCACTTCTGTTTAGAAAAACTTTCTC i canFam3.chr7 C 0 C 0 a score=38596.000000 s hg38.chr1_KI270759v1_alt 309145 12 + 425601 AAAGAAGGAAAC s panTro4.chr1 225065947 12 + 228333871 AAAGAAGGAAAC i panTro4.chr1 C 0 I 6 s ponAbe2.chr1 226434827 12 - 229942017 AAAGAAGGAAAC i ponAbe2.chr1 C 0 I 6 s nomLeu3.chr5 140318817 12 - 143122389 AAAGAAGGAAAC i nomLeu3.chr5 C 0 I 2 s rheMac3.chr1 17029982 12 - 229590362 AAAGAAGGAAAT i rheMac3.chr1 C 0 I 6 s macFas5.chr1 223793876 12 - 227556264 CAAGAAGGAAAT i macFas5.chr1 C 0 I 2 s papAnu2.chr1 16844234 12 - 220367699 AAAGAAGGAAAT i papAnu2.chr1 C 0 I 2 s chlSab2.chr25 82643738 12 + 85787240 AAAGAAGGAAAT i chlSab2.chr25 C 0 I 8 s mm10.chr1 178876136 12 + 195471971 GAGGCTGGAAAT i mm10.chr1 C 0 C 0 s canFam3.chr7 36456237 12 + 80974532 AAAGAAGGAAGC i canFam3.chr7 C 0 C 0 e calJac3.chr19 14355376 329 - 49578535 I a score=1000.000000 s hg38.chr1_KI270759v1_alt 309157 1 + 425601 G s nomLeu3.chr5 140318831 1 - 143122389 G i nomLeu3.chr5 I 2 C 0 s macFas5.chr1 223793890 1 - 227556264 G i macFas5.chr1 I 2 C 0 s papAnu2.chr1 16844248 1 - 220367699 G i papAnu2.chr1 I 2 C 0 s mm10.chr1 178876148 1 + 195471971 G i mm10.chr1 C 0 I 12 e canFam3.chr7 36456249 0 + 80974532 C e calJac3.chr19 14355376 329 - 49578535 I e rheMac3.chr1 17029994 6 - 229590362 I e chlSab2.chr25 82643750 8 + 85787240 I e ponAbe2.chr1 226434839 6 - 229942017 I e panTro4.chr1 225065959 6 + 228333871 I a score=1017.000000 s hg38.chr1_KI270759v1_alt 309158 3 + 425601 CAT s nomLeu3.chr5 140318832 3 - 143122389 GAT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223793891 3 - 227556264 GAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16844249 3 - 220367699 GAT i papAnu2.chr1 C 0 C 0 e mm10.chr1 178876149 12 + 195471971 I e canFam3.chr7 36456249 0 + 80974532 C e calJac3.chr19 14355376 329 - 49578535 I e rheMac3.chr1 17029994 6 - 229590362 I e chlSab2.chr25 82643750 8 + 85787240 I e ponAbe2.chr1 226434839 6 - 229942017 I e panTro4.chr1 225065959 6 + 228333871 I a score=262.000000 s hg38.chr1_KI270759v1_alt 309161 12 + 425601 TCGGATAGGGAT s canFam3.chr7 36456249 6 + 80974532 ------AAGGAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178876149 12 + 195471971 I e calJac3.chr19 14355376 329 - 49578535 I e rheMac3.chr1 17029994 6 - 229590362 I e chlSab2.chr25 82643750 8 + 85787240 I e papAnu2.chr1 16844252 0 - 220367699 C e macFas5.chr1 223793894 0 - 227556264 C e nomLeu3.chr5 140318835 0 - 143122389 C e ponAbe2.chr1 226434839 6 - 229942017 I e panTro4.chr1 225065959 6 + 228333871 I a score=0.000000 s hg38.chr1_KI270759v1_alt 309173 22 + 425601 GAGGAGATGCAGACCTTTAAAA e mm10.chr1 178876149 12 + 195471971 I e canFam3.chr7 36456255 0 + 80974532 C e calJac3.chr19 14355376 329 - 49578535 I e rheMac3.chr1 17029994 6 - 229590362 I e chlSab2.chr25 82643750 8 + 85787240 I e papAnu2.chr1 16844252 0 - 220367699 C e macFas5.chr1 223793894 0 - 227556264 C e nomLeu3.chr5 140318835 0 - 143122389 C e ponAbe2.chr1 226434839 6 - 229942017 I e panTro4.chr1 225065959 6 + 228333871 I a score=9237.000000 s hg38.chr1_KI270759v1_alt 309195 34 + 425601 TCGGATAGGGATGAGGAGATGCAGACCTTTAAAA s macFas5.chr1 223793894 34 - 227556264 TCGGATAGGGATGAGGAGATCCAGACCTTTAAAA i macFas5.chr1 C 0 T 34 s papAnu2.chr1 16844252 34 - 220367699 TCGGATAGGGATGAGGAGATCCAGACCTTTAAAA i papAnu2.chr1 C 0 T 34 e mm10.chr1 178876149 12 + 195471971 I e canFam3.chr7 36456255 0 + 80974532 C e calJac3.chr19 14355376 329 - 49578535 I e rheMac3.chr1 17029994 6 - 229590362 I e chlSab2.chr25 82643750 8 + 85787240 I e nomLeu3.chr5 140318835 0 - 143122389 C e ponAbe2.chr1 226434839 6 - 229942017 I e panTro4.chr1 225065959 6 + 228333871 I a score=9237.000000 s hg38.chr1_KI270759v1_alt 309229 34 + 425601 TCGGATAGGGATGAGGAGATGCAGACCTTTAAAA s macFas5.chr1 223793894 34 - 227556264 TCGGATAGGGATGAGGAGATCCAGACCTTTAAAA i macFas5.chr1 T 34 T 34 s papAnu2.chr1 16844252 34 - 220367699 TCGGATAGGGATGAGGAGATCCAGACCTTTAAAA i papAnu2.chr1 T 34 T 34 e mm10.chr1 178876149 12 + 195471971 I e canFam3.chr7 36456255 0 + 80974532 C e calJac3.chr19 14355376 329 - 49578535 I e rheMac3.chr1 17029994 6 - 229590362 I e chlSab2.chr25 82643750 8 + 85787240 I e nomLeu3.chr5 140318835 0 - 143122389 C e ponAbe2.chr1 226434839 6 - 229942017 I e panTro4.chr1 225065959 6 + 228333871 I a score=9237.000000 s hg38.chr1_KI270759v1_alt 309263 34 + 425601 TCGGATAGGGATGAGGAGATGCAGACCTTTAAAA s macFas5.chr1 223793894 34 - 227556264 TCGGATAGGGATGAGGAGATCCAGACCTTTAAAA i macFas5.chr1 T 34 T 34 s papAnu2.chr1 16844252 34 - 220367699 TCGGATAGGGATGAGGAGATCCAGACCTTTAAAA i papAnu2.chr1 T 34 T 34 e mm10.chr1 178876149 12 + 195471971 I e canFam3.chr7 36456255 0 + 80974532 C e calJac3.chr19 14355376 329 - 49578535 I e rheMac3.chr1 17029994 6 - 229590362 I e chlSab2.chr25 82643750 8 + 85787240 I e nomLeu3.chr5 140318835 0 - 143122389 C e ponAbe2.chr1 226434839 6 - 229942017 I e panTro4.chr1 225065959 6 + 228333871 I a score=3850.000000 s hg38.chr1_KI270759v1_alt 309297 2 + 425601 TC s panTro4.chr1 225065965 2 + 228333871 TC i panTro4.chr1 I 6 C 0 s ponAbe2.chr1 226434845 2 - 229942017 TC i ponAbe2.chr1 I 6 C 0 s nomLeu3.chr5 140318835 2 - 143122389 TC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17030000 2 - 229590362 TC i rheMac3.chr1 I 6 C 0 s macFas5.chr1 223793894 2 - 227556264 TC i macFas5.chr1 T 34 C 0 s papAnu2.chr1 16844252 2 - 220367699 TC i papAnu2.chr1 T 34 C 0 s canFam3.chr7 36456255 2 + 80974532 TA i canFam3.chr7 C 0 C 0 e mm10.chr1 178876149 12 + 195471971 I e calJac3.chr19 14355376 329 - 49578535 I e chlSab2.chr25 82643750 8 + 85787240 I a score=22491.000000 s hg38.chr1_KI270759v1_alt 309299 6 + 425601 GGATAG s panTro4.chr1 225065967 6 + 228333871 GGATAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226434847 6 - 229942017 GGATAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140318837 6 - 143122389 GGATAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17030002 6 - 229590362 GGATAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223793896 6 - 227556264 GGATAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16844254 6 - 220367699 GGATAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82643758 6 + 85787240 GGATAG i chlSab2.chr25 I 8 C 0 s calJac3.chr19 14355705 6 - 49578535 GGACGG i calJac3.chr19 I 329 C 0 s canFam3.chr7 36456257 6 + 80974532 GGGTAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178876149 12 + 195471971 I a score=938149.000000 s hg38.chr1_KI270759v1_alt 309305 290 + 425601 GGATGAGGAGATGCAGACCTTTAAAATCGACAGCACAATTGCATCCACATTTCTCCTGACTGT-GT-GGGAGTTGGCC-TTGAACCCTGCCCTCACTGTTTT--CTCCTGGGTAGTGTCTTCACCCTGTCAATGTAAGAGTCTGACAAATGTTTAGTTTATTCTTTTAAGC--------------------------------AGCTGT-----------------CA---------------GTAATCATCATCATCAGAGCCTGCAGG-ACTTTCTTGTACTTTCAGT--AAAGAGTGACTCGCAAAACATCTAACCCTTGAGCCAAATGACTCCCAAATGGCACTGATCAGAAAAACTT s panTro4.chr1 225065973 290 + 228333871 GGATGAGGAGATCCAGACCTTTAAAATCGACAGCACAATTGTATCCACATTTCTCCTGACTGT-GT-GGGAGTTGGCC-TTGAACCCTGCCCTCACCGTTTT--CTCCTGGGTAGTGTCTTCACCCTGTCAATGTAAGAGTCTGACAAATGTTTAGTTTATTCTTTTAAGC--------------------------------AGCTGT-----------------CA---------------GTAATCATCATCATCAGAGCCTGCAGG-ACTTTCTTGTACTTTCAGC--AAAGAGTGACTTGCAAAACATCTAACCGTTGAGCCAAATGACTCCCAAATGGCACTGATCAGAAGAACTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226434853 290 - 229942017 GGATGAGAAGATCCAGACCTTTAAAATTGACAGCACAATTGTATCCACATTTCTCCTGACTGT-GT-GGGAGTTGGCC-TCGAACCCTGCCCTCACTGTTTT--CTCCTGGGTAGTGTCTTCGCCCTGTCAATGTAAGAGTCTGACAAATGTTTAGTTTATTATTTTAAGC--------------------------------AGCTGT-----------------CA---------------GTAATCATCATCATCAGAGCCTGCAGT-ACTTTCTTGTACTTTCAGC--AAAGAGTGACTCGCAAAACATCTAACTCTTGAGCCAAATGACTCCCAAATGGCACTGATCAGAAAAACTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140318843 286 - 143122389 GGATGAGGAGATCCAGACCTTTAAAATTGACAGCACAATTGTATCCACATTTCTC----CTGT-GT-GGGAGTTGGCC-TTGAACCCTGCCCTCACTGTTTT--CTCCTGGGTAGTGTCTTCGCCCTGTCAACGTAAGAGTCTGACAAATGTTTAACTGATTCTTTTAAGC--------------------------------AGCTGT-----------------CA---------------ATCATCATCATCATCAGAGCCTGCAGT-ACTTTCTTGTACTTTCAGC--AAAGAGTGACTCGCAAAACATCTAAATCTTCAGCCAAATGACTCCCAAATGGCACTGATCAGAAAAACCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17030008 290 - 229590362 GGATGAGGAGATCCAGACCTTTAAAATCAACAGCACAATTGTATCCACACTTCTCCTGACTGT-GT-GGGAGTTGACC-TTGAACCCTGCCCTCACTGTTTT--CTCCTGGGTAGTGTCTTCGCCCTGTCAATGTGAGAGTCTGACGAATGTTTAGTTTATTCTTTTACGC--------------------------------AGCTGT-----------------CA---------------ATAATCATCACTATCAGAGCCTGCAGT-ACTTTCTTGTACTTTCAGC--CAGCAGTGACTCGCAAAACATCTGAATCTTGAGCCAAACGACTCCCAAGTGGCACTGAGGAGAAAAACTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223793902 290 - 227556264 GGATGAGGAGATCCAGACCTTTAAAATCAACAGCACAATTGTATCCACACTTCTCCTGACTGT-GT-GGGAGTTGACC-TTGAACCCTGCCCTCACTGTTTT--CTCCTGGGTAGTGTCTTCGCCCTGTCAATGTGAGAGTCTGACGAATGTTTAGTTTATTCTTTTACGC--------------------------------AGCTGT-----------------CA---------------ATAATCATCACTATCAGAGCCTGCAGT-ACTTTCTTGTACTTTCAGC--CAACAGTGACTTGCAAAACATCTAAATCTTGAGCCAAACGACTCCCAAGTGGCACTGAGGAGAAAAACTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16844260 290 - 220367699 GGATGAGGAGATCCAGACCTTTAAAATCAACGGCACAATTGTATCCACACTTCTCCTGACTGT-GT-GGGAGTTGACC-TTGAACCCTGCCCTCACTGTTTT--CTCCTGGGTAGTGTCTTCGCCCTGTCAATGTAAGAGTCTGACGAATGTTTAGTTTATTCTTTTACGC--------------------------------AGCTGT-----------------CA---------------ATAATCATCATTATCAGAGCCTGCAGT-ACTTTCTTGTACTTTCAGC--CAACGGTGACTTGCAAAACATCTAAATCTTGAGCCAAACGACTCCCAAATGGCACTGAGGAGAAAAACTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82643764 290 + 85787240 GGATGAGGAGATCTAGACCTTTAAAATCAACAGCACAATTGTATCCACATTTTTCCTGACTGT-GT-GGGAGTTGACC-TTGAACCCTGCCCTCACTGTTTT--CTCCTGGGTAGTGTCTTCGCCCTGTCAATGTAAGAGTCTGACTAATGTTTAGTTTATTCTTTTATGC--------------------------------AGCTGT-----------------CA---------------ATAATCATCGTTATCAGAGCCTGCAGT-ACTTTCTTGTACTTTCAGC--AAACAGTGACTTGCAAAACATCTAAATCTTGAGCCAAACGACTCCCAAATGGCACTGATGAGAAAAACTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14355711 301 - 49578535 GGACGAGGATATCCAGACCTTTAAAATCTACTGCAGAA-TATAACCACACTTCTCTTGA-TGT-CT--GAAGCTGGCC-TTGAACCC-GCCCTCCCTGTTTC--CTCCTGGGTAATGTCTTCGCCCTGTGAATGTGAGGGTCTGACGAATGTTTAGTTTCTTCTTTTAAAC--------------------------------AGCTGC-----------------CAATTGTTatcatcatcatcaccatcatcaccaGGGCCTGAAGT-ACTTTCTTGTACTTGCTGC--AAAGAGTGACTCATAAAACATCTAAATCTTGAGCCAAAAGACTCCCAAATGGCACGGATCAGAAAAACTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178876161 262 + 195471971 --------AGATTAGGAGCTCAGACATCTGCAGCTAAGCTGTGAGTTCCTTTCTTCCTGCAGTCCT-GGGAGCTGGCTGTTAAGTCCCACCCTC-CTGCTTT---TTCTGGGTAATGTCTTAGCAA-GTCGATGTGAGAACTGGAACACTG-ATATCTTAGTCATTTAAAC--------------------------------AGCTGT-----------------CA---------------ATAGT------------AGTCTGCAGT-GAGTTCTGACATGGTCAGC--AAA-AGGAACTCCCAATATCTCTG---CCTCAGACAAG-GGCTTCCAAA-GGCACCAAGCAGAGAGGTCC i mm10.chr1 I 12 I 28 s canFam3.chr7 36456263 332 + 80974532 AAATGAGAAGATCCAGACCTTTAAAGTTCGAAACAGAATTTCAGCC--------CCTGACAGT-CTGGGGGGCTGGCT-TTAAATCCTGCCCTCACTGTTTTTTTTTCTGGGTTTTGTCTTAGCAGCACAAACATGGAAATCTGACAAGTGTTT---TTATTCTTTTAAGCTTTTTTATTGTATTTAAGCTTTATTTCTTTTAAGCTGTTTATTCTTTGAAGACAATA---------------CTAATGATAATAATCAGAGCCTGTAGTGGGGTTCTTAGACTTTGAGTGGAGAGAGTGACTCGAAAAAGATCTGAATTTTCAGCCAAATTGCTTCCAAATGG--ACAAGTGGAAGATCTT i canFam3.chr7 C 0 C 0 a score=166675.000000 s hg38.chr1_KI270759v1_alt 309595 48 + 425601 GGGAGATGGGATTATCTC-TCCTCCTTCCAGGTTTCAAACCAAACTGAG s panTro4.chr1 225066263 48 + 228333871 GGGAGATGGGATTATCTC-TCCTCCTTCCAGGTTTCAAACCAAACTGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226435143 43 - 229942017 GGGAGATGGGATTAT------CTCCTTCCAGGTTTCAAACCAAACTGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140319129 48 - 143122389 GGGAGATGGGATTATCTC-TCCTCCTTCCAGGTTTCAAACCAAACTGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17030298 48 - 229590362 GGGAGATGGGATAATCTC-TCCTCCTTCCGGGTTTCAAACCAAACTGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223794192 48 - 227556264 GGGAGATGGGATAATCTC-TCCTCCTTCTGGGTTTCAAACCAAATTGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16844550 48 - 220367699 GGGAGATGGGATAATCTC-TCCTCCTTCCGGGTTTCAAACCAAACTGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82644054 48 + 85787240 AGGAGATGGGATAATCTC-TCCTCCTTCCGGGTTTCAAACCAAATGGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14356012 48 - 49578535 AGGAGATGGGATAATCTC-TCCTCCTTCCAGGTTTCAAACCAAACTGAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36456595 49 + 80974532 AGGAGATGGGATAATCTCATCCTCCTTCCAGGTTTCAAACTGCGCTGAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178876423 28 + 195471971 I a score=2478644.000000 s hg38.chr1_KI270759v1_alt 309643 718 + 425601 GACAACTCTGTTTTCGGTTTTGTACTT-TTTTTCTTTTTTGCAGTTCTGCTTTCGATTTGGAATCTGAAAGTAGGGAGAAATCTTGAAAACAAGGAAACAGTTCATTAAATGACTTCAAATATAAGAACTTGAAATTCAGATTCCACAAAAGTTTAGGCCAAGACATTCCCTAAACCCAGTGATCCA-C-CCCAAATCAGTACCTAAGGAATCCTGCACCCTTATTAAATATTTAATAGCCAGCTCATCTTCTTCCTATTTTTAAGTTGTGAAAGAGAATTGCTTTTAAATAATGCATTCAGGTTAAAAGAAAGGGCAAATACCACGAATGGTTTCCAAAACCTCGGTTAGGTCCTTC-----CTAATGTTTCAGTGGATGAGAACAAAGAA--GGGGAAGGAGTCCAGGGGTCGTGCGATCGGCAGACCTGGGGGACATCTCTTCCCTCCC--GAGGGGAAAGGATCC---CGGCCAGAATG----CACACGGCCTCCCCGCCT----GGGACTC-ACTTGACTTCAGTGAATTTATAACTGTTTAAAATATAATGAGGAGATTTGGAGGGTTGTTTAAAATGGAAA-TTTTGTTTACTTACATATAAGTAATAATCCCTGCGGACCTGGCAGCCAGAACTCAATTAGGGGAAAGTTTATTAATTAGTCACCCTGCAGGGAAGC------------------------------CATTAGA---------------------AGAG----------------------------ATCTCTGCCGCAAGAACTAAATAGAC----TCTGTGTGCGCCTCTGAATCT s panTro4.chr1 225066311 718 + 228333871 GACAACTCTGTTTTCAGTTTTGTACTT-TTTTTCTTTTTTGCAGTTCTGCTTTCGATTTGGAATCTGAAAGTAGGGAGAAATCTTGAAAACAAGGAAACAGTTCATTAAATGACTTCAAATATAAGAACTTGAAATTCAGATTCCACAAAAGTTTAGGCCAAGACATTCCCTAAACCCAGTGATCCA-C-CGCAAATCAGTACCTAAGGAATCCTGCACCCTTATTAAATATTTAATAACCAGCTCATCTTCTTCCTATTTTTAAGTTGTGAAAGAGAATTGCTTTTAAATAATGCATTCAGGTTAAAAGAAAGGGCAAATACCACGAATGGTTTCCAAAACCTCTGTTAGGTCCTTC-----CTAATGTTTCAGTAGATGAGAACAAAGAA--GGGGAAGGAGTCCAGGGGTCGTGCGATCGGCAGACCTGGGGGACATCTCTTTCCTCCC--GAGGGGAAAGGATCC---CGGCCAGAATG----CACACGGCCTCCCCGCCT----GGGACTC-ACTTGACTTCAGTGAATTTATAACTGTTTAAAATATAATGAGGAGATTTGGAGGGTTGTTTAAAATGGAAA-TTTTGTTTACTTACATATAAGTAATAATCCCTGCGGACCTGGCAGCCAGAACTCAATTAGGGGGAAGTTTATTAATTAGTCACCCTGCAGGGAAGC------------------------------CATTAAA---------------------AGAG----------------------------ATCTCTGCCGCAAGAACTAAATAGAC----TGTGTGTGCGCCTCTGAATCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226435186 723 - 229942017 GACAACTCTGTTTTCGGTTTTGTACTT-TTTTTCTTTTTTGCGGTTCTGCTTTCAATTTGGAATCTGAAAGTAGGGAGAAATCTTGAAAACAAGGAAACAGTTCATTAAATGACTTCAAATATAGGAACCTGAAATTCAGCTTCCACAAAAGTTTAGGCCAAGACATTCCCTAAATCCAGTGATCCA-C-CCCAAATCAGTACCTAAGGAATCCCGCACACTTATTAAATATTTAATAGCCAGCTCATCTTCTTCCTATTTTTAAATTGTGAAAGAGAATTGCTTTTAAATAATGCATTCAGGTTAAAAGAAAGGGCAAATACCACGACTGGTTTCCAAAACCTCTGTTAGGTCCTTCCTAATCTAATGTTTCAGTAGATGAGGACAAAGAA--GGGGAAGGAGTCCAGGGGTCGTGGGATCGGCAGACATGGGGGACATCTCTTTCCTCCC--GAGGGGAATGGATTC---AGGCCAGAATG----CACACGGCCTCCCCGCCT----GGGACTC-GCTTGACTTCAGTGAATTTATAACTGTTTAAAATATAATGAGGAGATTTGGAGCGTTGTTTAAAATGGAAA-TTTTGTTTACTTACATATAAGTAATAATCCGTGTGGACCTGGCAGCCAGAACTCAATTAGGGGAAAGTTTATTAATTAGTCACCCTGCAGGGAAGC------------------------------CATTAGA---------------------AGAG----------------------------ATCTCTGCCACAAGAACTAAATAGAC----TGTGTGTGCGCATCTGAATCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140319177 719 - 143122389 GACAACTCTGTTTTCGGTTTTGTACTT-TTTTTCTTTTTTGCGGTTCTGCTTTCAATTTGGAATCTGAAAGTAGGGAGAAATCTTGAAAACAAGGAAACAGTTCATTAAATGACTTCAAATATGGGAACCTGAAATTCAGCTTCCACAAAAGTTTAGGCCAAGACATTCCCTAAACCCAGTGGTGTACC-CCCAAATCAGTACCTAAGGAATCCTGCACACTTATTAAATATTTAATAGCCAGCTCATCTTCTTCCTGTTTTTAAATTGTGAAAGAGAATTGCTTTTACATAATGCATTCAGGTTAAAAGAAAGGGCAAATACCACGAATGGTTTCCAAAACCTCTGTTAGGTCCTTC-----CTAATGTATCAGTAGATGAGGACAAAGAA--GGGGAAGGAGTCCAGGGGTCGTGGGATCGGCAGACTTGGGGGACATCTTTTTCCTCCT--GAGGGGAATGGATCC---CAGCCAGAATG----CACACGGCCTCCCCGCCT----GGGACTC-GCTTGACTTCAGTGAATTTATAACTGTTTAAAATATAATGAGGAGATTTGGAGTGTTGTTTAAAATGGAAA-TTTTGTTTACTTACATGTAAGTAATAATCCCTGCAGACCTGGCAGCCAGAACTCAATTAGGGGAAAGTTTATTAATTAGTCACCCTGCAGGGAAGC------------------------------CATTAGA---------------------AGAG----------------------------ATCTCTGCCACAAGAACTAAATACAC----TGAGTGTGCACGTCTGGATCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17030346 707 - 229590362 GACAACTCTGCTTTGGGTTTTGTAC---TTTTTCTTTTTTGCGGTTCTGCTTTCCACTTGGAATCTGAAAGTAGGGAGAAATCTTGAAAACAAGGAAACAGTTCATAAAATGACTTCAAATATAGGAACCTGAAATTCAGCTTCCACAAAAGTTTAGGCCAAGACATTCCCTAAACACAGTGATCCA-C-CCCAAATCAGTACCTAAGGAATCCTGCACACTTATTAAATGTTTAATAGCCAACTCATC----TCCTATTTTTAAATTGTGAAAGAGAATTGCTTTTAAATAATGCATTCAGGTTAAAGGAAAAGGCAAACACCACACGTGGCTTCCAAAACCTCTGTTAGGTCCTTC-----CTGATGTTTCAGTAGATGAGGACAAAGAA---GGGAGGGAGTC----GGTCTTGGGATCGGCAGACCTGGGGGACATCTCTCTCCTCTC--GAGGGGAAAGGATCC---AGGCCAGAGTG----CACACCGCCTCCCTGCCT----GGGACTT-GCTTGACTTCAGTGAATTTATAACTGTTTAAAATATTATGAGGAGATTTGGAGCGTTGTTTAAAATGGAAA-TTTTGTTTACTTAGATATAAGTAATAATCCCTGCGGACCTGGCAGCCAGAACCCAATTAGGGGAAAGTTTATTAATTAGTCACCCTGCAGGGAAGC------------------------------CATTAGA---------------------AGAG----------------------------ATCTCTGCCACAAGAACTAAATAGGC----TGTGTGCGCGCATCTGAATCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223794240 707 - 227556264 GACAACtctgctttgggttttgtac---tttttcttttttgcggttctgctttcCACTTGGAATCTGAAAGTAGGGAGAAATCTTGAAAACAAGGAAACAGTTCATAAAATGACTTCAAATATAGGAACCTGAAATTCAGCTTCCACAAAAGTTTAGGCCAAGACATTCCCTAAACACAGTGATCCA-C-CCCAAATCAGTACCTAAGGAATCCTGCACACTTATTAAATGTTTAATAGCCAACTCATC----TCCTATTTTTAAATTGTGAAAGAGAATTGCTTTTAAATAATGCATTCAGGTTAAAGGAAAAGGCAAACACCACGCGTGGCTTCCAAAACCTCTGTTAGGTCCTTC-----CTGATGTTTCAGTAGATGAGGACAAAGAA---GGGAGGGAGTC----GGTCGTGGGATCGGCAGACCTGGGGGACATCTCTCTCCTCTC--GAGGGGAAAGGATCC---AGGCCAGAATG----CACACCGCCTCCCCGCCT----GGGACTT-GCTTGACTTCGGTGAATTTATAACTGTTTAAAATATTATGAGGAGATTTGGAGCGTTGTTTAAAATGGAAA-TTTTGTTTACTTAGATATAAGTAATAATCCCTGCGGACCTGGCAGCCAGAACCCAATTAGGGGAAAGTTTATTAATTAGTCACCCCGCAGGGAAGC------------------------------CATTAGA---------------------AGAG----------------------------ATCTCTGCCACAAGAACTAAATAGGC----TGTGTGCGCGCATCTGAATCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16844598 712 - 220367699 GACAACTCTGCTTTgggttttgtac-t-tttttcttttttgcggTTCTGCTTTCCACTCGGAATCTGAAAGTAGGGAGAAATCTTGAAAACAAGGAAACAGTTCATAAAATGACTTCAAATATAGGAACCTGAAATTCAGCTTCCACAAAAGTTTAGGCCAAGACATTCCCTAAACACAGTGATCCA-C-CCCAAATCAGTACCTAAGGAATCCTGCACACTTATTAAATGTTTAATAGCCAACTCatc----tcctatttttaaattgtgaaagaGAATTGCTTTTAAATAATGCATTCAGGTTAAAGGAAAAGGCAAACACCACGCGTGGCTTCCAAACCCTCTGTTAGGGCCTTC-----CTAGTGTTTCAGTAGATGAGGACAAAGAA---GGGAAGGAGTCCAGGGGTCGTGGGATCGGCAGACCTGGGGGACATCTCTCTCCTCTC--GAGGGGAAAGgatcc---aggccagagtg----cacaCCGCCTCCCTGCCT----GGGACTT-GCTTGACTTCAGTGAATTTATAactgtttaaaatattatgaggCGATTTGGAGCGttgtttaaaatggaaa-ttttgtttACTTAGATATAAGTAATAATCCCTGTGGACCTGGCAGCCAGAACCCAATTAGGGGAAAGTTTATTAATTAGTCACCCCGCAGGAAAGC------------------------------CATTAGA---------------------AGAG----------------------------ATCTCTGCCGCAAGAACTAAATAGGC----TGTGTGCGCGCGTCTGAATCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82644102 713 + 85787240 GACAACTCTGCTTTGCGTTTTGTAC-T-TTTTTCTTTTTTGTGGTTCTGCTTTCAACTTGGAATCTGAAAGTAGGGAGAAATCTTGAAAACAAGGAAACAGTTCATAAAATGACTTCAAATATAGGAACCTGAAATTCAGCTTCCACAAAAGTTTAGGCCAAGACATTCCCTAAACCCAGCGATCCA-C-CCCAAATCAGTACCTAAGGAATCCTGCACACTTATTAAATGTTTAATAGCCAACTCATC---TTCCTATTTTTAAATTGTGAAAGAGAATTGCTTTTAAATAATGCATTCAGGTTAAAGGAAAAGGCAAACACCACGCATGGCTTCCAAAACCTCTGTTAGGTCCTTC-----CTAATGTTTCAGTAGATGAGGACAAAGAA---GGGAAGGAGTCCAGGGGTCGTGGGATCGGCAGACCTGGGGGACATCTCTCTCCTCTG--GAGGGGAAAGCATCC---AGGCCAGAATG----CACACCACCTCCCCGCCT----GGGACTT-GCTTGACTTCAGTGAATTTATAACTGTTTAAAATATTATGAGGAGATTTGGAGCGTTGTTTAAAATGGAAA-TTTTGTTTACTTAGATATAAGTGATAATCCCTGTGGACCTGGCAGCCAGAACTCAATTAGGGGAAAGTTTATTAATTAGTCACCCCGCAGGGAAGC------------------------------CGTTAGA---------------------AGAG----------------------------ATCTCCGCCACAAGAACTAAATAGGC----TGTGTGTGCACGTCAGAATCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14356060 684 - 49578535 AACTACTCTATTTTTGGTTTTTTAC---------TTTTTTTCGGTTCTGCTTTCGATTTGGAATCTGAAAGTCGGGAGAAATCTTGAAAACAAGGAGACAGTTGATTAAATGACTTCAAATGTAGGAACCTGAAATTCAG------------------------------CCAAACTCGGTGATCCA----CCAAATCAGTACCTAAGGAATCCTGCACACTTACTAAATATTCAACAGCCAGCTCTTC---TTCCTGTTTTTAAATTGTGAAAGAGAATTGCTTTTAAATAATGCATTCAGGTTAAAGGAAAAGGCAAATACCATGAATGGCTTCCAGAACCTGTTGTAGGTCCTTC-----CTGAGGTTTCAGTAGATGTGGATGAAGAG--CGGGAGGAGGGC--AGGCTCCGGGGATCGG-AGAC-TGGGGGACCTCTCTTTCCTCTT--GAGGAGAAAGGATCC---TGACCCCGTTG----CACTCGTCCTCCCTGCCC----AGGACTT-GCTTGACTTCA-TGAATTTATAACTGTTTAAAATGTAATGAGGAGGTCTGAAGCATTGTTTAAAATGGAAA-TTTTGTTTACTTACATATAAGTAATAATCCCCGTGGACCTGGCAGCCAGAACTCAATTAGGGGAACGTTTATTAATTAGTTACCCTGCAGGGAAGCAGGAAGTGGAGCTGGCTGCTGTTAACCAGTCATTAGA---------------------AGAG----------------------------ATCTCTGCTACAAGAACTAAATAGGC----TGAGT---------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178876451 746 + 195471971 GGCAACTCT-CTTTTGGTGTTTTATTTATTTATTTATTCCTTCATCTTATTTGCATCTTAGAATCTGAAAGCTGAAGCAAACAATGAAAATGCAGAGAGATTCCACCAAAGTGCTTCAAATGTAAAAATTTGAATTTCTGACTCCACCACAGCGTAAA--AGAACATTCTCTAAAACTGACGACTTG-CTCCCAAGTTGGT-CCTACCAAATCCTGAGCACTTATCAAATATTTAACATCTAACTCATC---CTTTTATTTCTAAGTTGTGCATGAAAATTGCTTTTAAATAATAAATTCAGGTGAAAGGAAAAGGCAGATGCCACCAGTGGCTTCCAAA---CCTCTCAGGTGATGT-----CCGGTGTTGCAGTAAACTAGATGAGAGAA---AGGGAGGGTTC---AGGCTGTGGAG--GGCAAA--GGGCAAACCACTCCCACCTGCT--AGGGCCCCAGCATCTCAAAGGCAAAGATT----CAGA------CCCAGCCT----GGAGCCCAGCAGGATTTCCGTGGATTTATG--TGGCTAACCCATAATGAGAAGATTTGGCATGTTGTTTAAAATGGAAA-TTTTGTTTACTTAtatataagttataatccctgtggacttggcagccagaactcaattaagggaaggtttattaattagtcaccctgaggggaagcaggaagcagagctgttaacC----------AACTGGG---------------------AGAGGCTTAGCCTGATGATGGATTCAGGGGCAATCTCTGCTGCAAGAACTAGATACAT----tgtgtgtgtgtgtgtgtgtgt i mm10.chr1 I 28 I 144 s canFam3.chr7 36456644 760 + 80974532 AACAA--CTGTTTTGAGTTTTTCAC---TTTTCTTCCTCCATGGTTCTGCTCTCTATTTGGAACCTGAAAGAAGGAAGCAATTTTGAAAAT----AAACAGTTACTTAAATTACTTCAACTGTAAGAACTTGAAATTCCACTT-CACAGCGGTGTGGTCTGGGCCATTCCCTCAGCTCACCGGCCCT-C-CCCAAGTTGCTGCGCA---------GCGCATCTGCTGGAATATTCACATCCCATTCACCTTCTTGCTGTTTACACATTGTGAAGGCAGATTGCTTTTAAATAATAAATTCAGGGTAAAGGGAAAAGCAAGTACCATTAATGGCTCCCCAAAACCCTTTTCGGTACTTT-----CTAATATATCTGTAGATGATTAAAAGTGGGTGGGGGGAGAGACCAGGGGAGGT--CACCTGCATGCC------ACAGCACCTGGCTTCCCAGAAGGGGAGGAATCC---AGACCAGGATGTGCACAGACAGCCCTCCAGCCTTTCCAAGTCTC-GCTTGACTTCAGTAAATTTGTATCTGCTTAAAGTATAATGAGGATACTTGCAGTGTTGTTTAAAATGGAAATTTTTGTTTACTTATCTATAAGTAATAATCCCTGTGGGCCTGGCAGCCAGAACTCAATTAAAGGAAAGTTTATTAATTAATTACACTGCAGGGAAGCAAAGAGCAGAGCACACTGTTGTGAAGTGGCCATCAGAAGCTTGGATGGTGGATTTCAGAGAG----------------------------GTCTCTGCCTCAAGAACTAGACACGCCACATGTATGGATGCACCTGAATCT i canFam3.chr7 C 0 C 0 a score=223647.000000 s hg38.chr1_KI270759v1_alt 310361 98 + 425601 CATATGCACACATGCATTTTATACATTTTACACACAAATGCATCTTACATTTATAATTTTACACACAAATGCATTTTACACATATAAGTAGACAGAC-A s panTro4.chr1 225067029 98 + 228333871 CATATGCACACATGCATTTGATACATTTTACACACAAATACATCTTACATTTATAATTTTACACACAAATGCGTTTTACACATATAAGTAGACAGAC-A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226435909 67 - 229942017 CATACACACACATGCATTTTACAC-------------------------------ATTTTACACACAAATGCATTTTACACATATAAGTAGACAGAC-A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140319896 99 - 143122389 CATACACACACATGCATTTTATATGTTTTACACACAAATGCATTTTACAGTTATAATTTTACACACAAATGCATTTTACACATATAAGTAGACAGACAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17031053 96 - 229590362 CATACGCACACATGCATTTTATACATTTTACACACAGATGCATTTTACACCTATAATTTTACACACAAATGCATTTTACCCATAT--GTAGACAGAC-A i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223794947 96 - 227556264 CATACGCACACATGCATTTTATACATTTTACACACAGATGCATTTTACACCTATAATTTTACACACAAATGCATTTTACCCATAT--GTAGACAGAC-A i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16845310 96 - 220367699 CATACGcacacatgcattttatacattttacacacagatgcattttacacctataattttacacacaAATGCATTTTACCCATAT--GTAGACAgac-a i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82644815 92 + 85787240 CATACGCACACATGCATTTTATACATTTTACACACAGATGCATTTTACACGTATACTTTTACACACAAATGCATTTTACCCATAT--GT----AGAC-A i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14356744 75 - 49578535 -----------------------CTTTATACACACAAATGCATTTCACATTTATAATTTTACACACAAATGCATTTTACACATTTAAGTAGACAGAC-A i calJac3.chr19 C 0 C 0 s canFam3.chr7 36457404 59 + 80974532 ------TACATATGTATTTTATAA-----ACACACA---------------------CGTACAGACATAGGCA-------CATATAAATAGATGGAC-A i canFam3.chr7 C 0 C 0 e mm10.chr1 178877197 144 + 195471971 I a score=345290.000000 s hg38.chr1_KI270759v1_alt 310459 95 + 425601 AAA--AAAA----------------------------------------GTTTTAAACATTTCCAGTCAAAATAGAAAAG-----TCTTTGTTGATGTATCCCTGTTTTGCAGATAGCACTAGGTTAAGCTTAAAATATCTC s panTro4.chr1 225067127 95 + 228333871 GAA--AAAT----------------------------------------GTTTTAAACATTTCCAGTCAAAATAGAAAAG-----TCTTTGTTGATGTATCCCTGTTTTGCAGATAGCACTAGGTTAAGCTTAAAATATCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226435976 95 - 229942017 AAA--AAAT----------------------------------------GTTTTAAACATTTCCAGTCAAAATAGAAAAG-----TCTTTGTTGGTGTATCCCTGTTTTGCAGATAGCACTAGGTTAAGCTTAAAATATCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140319995 95 - 143122389 AAA--AAAT----------------------------------------GTTTTAAACATTTCCAGTCAAAATAGAAAAG-----TCTTTGTTGGTGTATCCGTGTTTTGCAGATAGCACTAGGTTAAGCTTAAAATATCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17031149 134 - 229590362 AAA--AAAGGTTTTAAACATTTCCAGTCAAAATAGAATGTTTAAAAAATGTTTTAAACATTTCCAGTCAAAATAG-AAAG-----TCTTTGTTGATGTATCCCTGTTTTGCAGATAGCACTAGGTTAAGCTTCAAATATCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223795043 94 - 227556264 AAA--AAAG----------------------------------------GTTTTAAACATTTCCAGTCAAAATAG-AAAG-----TCTTTGTTGATGTATCCCTGTTTTGCAGATAGCACTAGGTTAAGCTTCAAATATCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16845406 94 - 220367699 aaa--aaag----------------------------------------gttttaaacatCTCCAGTCAAAATAG-AAAG-----TCTTTGTTGATGTATCCCTGTTTTGCAGATAGCACTAGGTTAAGCTTCAAATATCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82644907 94 + 85787240 AAA--AAAG----------------------------------------GTTTTAAACATTTCCAGTCAAAATAG-AAAG-----TCTTTGTTGATGTATCCCTGTTTTGCAGATAGCACTAGGTTAAGCTTCAAATATCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14356819 97 - 49578535 AAAATAAAT----------------------------------------GTTTGAAACATTTCCAGTCCAAATAGAAAAG-----TGTTTGTTGATATATCCCTGCTTTGCAGATAGCACTAGGTTAAGTGTAAAATATCTC i calJac3.chr19 C 0 I 302 s mm10.chr1 178877341 100 + 195471971 aga--gaga----------------------------------------gGACTAAAACCTTCTGGTCAAGATAGAAAAGAACATTCTTTGTTGACATGTCACTGTTTTGTAGATAGTATCAGGTTGGGCTTACAATAGCTC i mm10.chr1 I 144 C 0 s canFam3.chr7 36457463 98 + 80974532 --A--AAAT----------------------------------------ATTTTCAAAGTGTCAAATCAACATAGAAAAGAAAATTCTATGTTGATGTATTACTGTTTTGCACATAACATTAGGTCAAGCTTAAATTACTTC i canFam3.chr7 C 0 C 0 a score=515618.000000 s hg38.chr1_KI270759v1_alt 310554 169 + 425601 CCTGTTTAAAAGC-------TCATTGGAAT------------TAGTGGGACTGATCCTTCAGCCTCATGGAGGCCTTCCTCTGCTTTGCGAAGCTAAATCTGTAATAGCTTGAGAGCCTCCTCGGGAATCCCAGCACTGGGAAACAGACCCTGAAGCCCTACTGATC--AGAGAGCTGCTTCTCATAACG s panTro4.chr1 225067222 169 + 228333871 CCTGTTTAAAAGC-------TCATTGGAAT------------TAGTGGGACTGATCCTTCAGCCTCATGGAGGCCTTCCTCTGCTTTGCGAAGCTAAATCTGTAATAGCTTGAGAGCCTCCTCGGGAATCCCAGCACTGGGAAACAGACCCTGAAGCCCTACTGATC--AGAGAGCTGCTTCTCGTAACG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226436071 169 - 229942017 CCTGTTTAAAAGG-------TCATTGGAAT------------TAGTGGGACTGGTCCTTCAGCATCATGGAGGCCTTCCTCTGCTTTGCGAAGCTACATCTGTAATAGCTTGAGAGCCTCCTTGGGAATCCCAGCACTGGGAAACAGACGCTGAAGCCCTACTGATC--AGAGAGCTGCTTCTCGTAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140320090 169 - 143122389 CCTGTTTAAAAGG-------TCATTGGAAT------------TAGTGGGACTGGTCCTGCAGCATCATGGAGGCCTTCCTCTGCTTTGCGAAGCTAAATCTGTAATAGCTTGAGAGCCTCCTCGGGAATCCCGGCACTGGGAAACAGACCCTGAAGCCCTGCTGATC--AGAGAGCTACTTCTGGTAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17031283 171 - 229590362 CCTGTTTAAAAGG-------TCATTGGAAT------------TGGAGGAACTGATCCTTCAACATCATGGAGGCCTTCCTCTGCTTTGCTAAGCCAAATCTGTGATAGCTTGAGAGCCTCCTTGGGGATCCCAGCACTGGGAAAGAGACCCTGACGCCCTGCTGATCAGAGAGAGCTGCTGCTTGTAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223795137 171 - 227556264 CCTGTTTAAAAGG-------TCATTGGAAT------------TGGAGGAACTGATCCTTCAACATCATGGAGGCCTTCCTCTGCTTTGCTAAGCCAAATCTGTGATAGCTTGAGAGCCTCCTTGGGGATCCCAGCACTGGGAAAGAGACCCTGACGCCCTGCTGATCAGAGAGAGCTGCTGCTTGTAATG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16845500 169 - 220367699 CCTGTTTAAAAGG-------TCATTGGAAT------------TGGAGGAACTGATCCTTCAATATCATGGAGGCCTTCCTCTGCTTTGCTAAGCCAAATCTGTGATAGCTTGAGAGCCTCCTTGGGGATCCCAGCACTGGGAAAGAGACCCTGACGCCCTGCTGATC--AGAGAGCTGCTGCTTGTAACG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82645001 169 + 85787240 CCTGTTTAAAAGG-------TCATTGGAAT------------TGAAGGAACGGATCCTTCAACATCTTGGAGGCCTTCCTCTGCTTTGCTAAGCCAAATCTGTGATAGCTTGAGAGCCTCCTTGGGGATCCCAGCACTGGGAAAGAGACCCTGACGCCCTGCTGATC--AGAGAGCTGCTGCTTGTAACG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14357218 171 - 49578535 CCTGTTTAAAACA-------TTATTGGAGTA----------ATAGTGGGACTGATCCTTCCACGTCACAGAGGCCTTCCTCTGCTTTGCTAAGCTCTGTCTGTAATGTCTTGAGAGCCTCCTTGGGAATTCCAGCACTAGGAAAGAGACCCGGAAGTTCTAATGATC--AGAGAGCTGCTTCTCGTAATG i calJac3.chr19 I 302 C 0 s mm10.chr1 178877441 138 + 195471971 CCCAATCCCAACA-------CATTTGTAATA----------TTAGCAGAGCTAGTTCTCCCCACTCGT-GAGTCCTTACT------------GTTAAATCTATAAGGGCTTGC-AGGCTCTGTGTAAATT-CAGCACTGGGGAGAGGAG--------------------CAAGTGCTACTCCTCATAACG i mm10.chr1 C 0 I 2297 s canFam3.chr7 36457561 184 + 80974532 CCTGGTTTAAAGAGAAATATTCCCTGGCTTAAATTGTGTCCTTAGTGGGGCTGATTCTCCACCTGTCCCAGAGCCCTCCCCTGCTTTGCTATGCTAT-TGTGTAAAGGC-TGAGAACCCCAGTGGGAATTCCATCTCTAGGGAAGAG-CCCCAAGGCCCTCATGATC--A-AGAGCTTCTCCTCATAAAG i canFam3.chr7 C 0 C 0 a score=39884.000000 s hg38.chr1_KI270759v1_alt 310723 14 + 425601 ACGCGTGTACTGGG s panTro4.chr1 225067391 14 + 228333871 ACGCGTGTACTGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226436240 14 - 229942017 ATGCGTGTACTAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140320259 14 - 143122389 ATGCGTGTACTAGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17031454 14 - 229590362 GCGCATGTACCAGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223795308 14 - 227556264 GCGCATGTACCAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16845669 14 - 220367699 ACGCGTGTACCAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82645170 14 + 85787240 ACGCGTGTACCAGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14357389 14 - 49578535 ATGGGTGCACCAGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36457745 14 + 80974532 ACAAGTCTATCAGG i canFam3.chr7 C 0 I 362 e mm10.chr1 178877579 2297 + 195471971 I a score=559126.000000 s hg38.chr1_KI270759v1_alt 310737 199 + 425601 CACCTAAAACAAGGTGGtgcttgggaccagaagtgtttcagatttcagattgttttccgattttggaatatttgcatatg--taatgatcccttgggaatgggacccaaatctaaatacagatttcatgtatgtttcatatatgccttatagacatagcctgaaggtaactttatacaatatcttcaataattttgtgcat s panTro4.chr1 225067405 198 + 228333871 CACCTAAAACAAGGTGGtgcttgggaccagaagtgtttcagatttcagattgttttcagattttggaatatttgcatatg--taatgatcccttgggaatggga-ccaaatctaaatacagatttcatgtatgtttcatatatgccttatagacatagcctgaaggtaactttatacaatatcttcaataattttgtgcat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226436254 199 - 229942017 CACCTAAAACAAGGTGGtgcttgggaccagaagtgtttcagatttcagattgttttcagattttggaatatttgcatatg--taatgataccttgggaatgggacccaaatctaaatacagatttcacgtatgtttcatatatgccttatagacatagcctgaaggtaactttatacaatatcttcaataattttgtgcat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140320273 198 - 143122389 CACCTAAAACAAGCTGGtgcttgggacccttttttccacagatttcagattgttttcagattttggaata-ttgcatatg--taatgatactttgggaatgagacccaaatctaaatacagatttcctgtatgtttcacatatgccttatagacatagcctgaaggtaactttgtacaatatcttcaatgattttgtgcat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17031468 197 - 229590362 CACCTCAAACAAGGTGGtgcttaggaccagaagtgtttcgggcttcaggttgttttcagattttggaatatttgcatatg--taatgatatcttgggaat--gacccaaatctaaatatagatttcatgtatgtttcatatacgccttatagacatagcctgaaggtaactttatacaagatcttcaataattttgtgcat i rheMac3.chr1 C 0 I 325 s macFas5.chr1 223795322 199 - 227556264 CACCTCAAACAAGGTGGtgcttaggaccagaagtgtttcgggcttcaggttgttttcagattttggaatatttgcatatg--taatgatatcttgggaatgggacccaaatctaaatatagatttcatgtatgtttcatatacgccttatagacatagcctgaaggtaactttatacaagatcttcaataattttgtgcat i macFas5.chr1 C 0 I 327 s papAnu2.chr1 16845683 199 - 220367699 CACCTCAAACAAGGTGGTGcttaggaccagaagtgtttcggGCTTCAGgttgttttcagattttggaatatttgcatatg--taatGATATCTTGGGAATGGGACCCAAATCTAAATATAGATTTCATGTATGTTTCATATATGCCTTATagacatagcctgaaggtaactTTATACAAGATCTtcaataattttgtgcat i papAnu2.chr1 C 0 I 315 s chlSab2.chr25 82645184 199 + 85787240 CACCTCAAACAAGGTGGtgcttaggaccagaagtgtttcgggcttcaggttgttttcagattttggaatatttgcatatg--taatgatatcttgggaatggaacccaaatctaaatatagatttcatgtatgtttcatatatgccttatagacatagcctgaaggtaactttatacaagatcttcaataattttgtgcat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14357403 192 - 49578535 CATCTCAGACAAGGTGGtgcttgggaccagaattgtttccaatttcctattgt-------ttttggaatatctgcatatgcataatgatatcttgggactgagatcgaaacctaaatacagaattcacgtatgtttcatgtatgccttataaacgtagtctgaaggtaattttataca--atctttcatgattttgtgcat i calJac3.chr19 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I a score=15004.000000 s hg38.chr1_KI270759v1_alt 310936 5 + 425601 gaaac s panTro4.chr1 225067603 5 + 228333871 gaaac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226436453 5 - 229942017 gaaac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140320471 5 - 143122389 gaaac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17031990 5 - 229590362 gaaac i rheMac3.chr1 I 325 C 0 s macFas5.chr1 223795848 5 - 227556264 gaaac i macFas5.chr1 I 327 C 0 s papAnu2.chr1 16846197 5 - 220367699 gaAAC i papAnu2.chr1 I 315 C 0 s chlSab2.chr25 82645383 5 + 85787240 gaaac i chlSab2.chr25 C 0 I 336 s calJac3.chr19 14357595 5 - 49578535 gaagt i calJac3.chr19 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I a score=608881.000000 s hg38.chr1_KI270759v1_alt 310941 225 + 425601 aaag-tttttactgcattttgactgcaacccctcacgaggtcaggtgtggaattttccccttgtggcatcatattggccttcaaaaagtttgagattcttggagtattttggatttcagattttttgggttagggatgctcagcgtgGACTAGTGATACTTCAGGGTAATGCGCTAATGA-TACGGAGATCGCACCTGTCCTGTTGACAAAGATAATTTCAAAAGCC s panTro4.chr1 225067608 225 + 228333871 aaag-tttttactgcattttgactgcaacccctcacgaggtcaggtgtggaattttccccttgtggcatcatatcggccttcaaaaagtttgagattcttggagtattttggatttcagattttttgggttagggatgctcagcgtgGACTAGTGATACTTCAGGGTAATGCGCTAATGA-TACGGAGATCGCACCTGTCCTGTTGACAAAGATAATTTCAAAAGCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226436458 223 - 229942017 aaag-tttttactgcattttgactgcaacccctcacgaggtcaggtgtggaattttccccttgtggcatcatattggccttcaaaaagtttgagattcttggagtattttggatttcagattttttgggttagggatgctcagcgtgGACTAGTGATACTTCAGGGTAATGCGCTAATGA-TA--GAGATCTCACCTGTCCTGTTGACAAAGATAATTTTAAAAGCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140320476 226 - 143122389 aaagttttttactgcattttaactgcaacccctcacgaggtcagatgtggaattttccccttgtggcatcatattggccttcaaaaagtttgagattcttggagtattttggatttcagatttttcgagttagggatgctcagcgtgGACTGGTGATACTTCAGGGTAATGCGCTAATGA-TACAGAGATCGCACCTGTCCTGTTGACAAAGCTAATTTTAAAAGCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17031995 225 - 229590362 aaag-ttttttctgcattttgactgcaacccctcaagaggtcaggtgtggaattttccccttgtggcatcatattggccttcaaaaaatgtgagattcttggagtactttggatttcaggtttctcaggttagggatgctcagcctgGACTAGTGACACCTCAGGCTGGTGCATTAATGA-CACAGAGGTCTTACCTGTCCTGTTGACAAAGATAGTTTTAAAAGCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223795853 225 - 227556264 aaag-tttttactgcattttgactgcaacccctcaagaggtcaggtgtggaattttccccttgtggcatcatattggccttcaaaaaatgtgagattcttggagtactttggatttcaggtttctcaggttagggatgctcagcctgGACTAGTGACACCTCAGGCTGGTGCATTAATGA-CACAGAGATCTTACCTGTCCTGTTGACAAAGATAGTTTTAAAAGCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16846202 225 - 220367699 AAAG-TTTTTACTGCATTTTGACTGCAACCCCTcaagaggtcaggtgtggaattttccccTTGTGGCATCATATTGGCCTTCAAAAAGTGTGAGATTCTTGGAGTACTTTGGATTTCAGGTTTTTCAGGTTAGGGATGCTCAGCCTGGACTAGTGACACCTCAGGGTGGTGCATTAATGA-CACAGAGATCTCACCTGTCCTGTTGACAAAGATAGTTTTAAAAGCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82645724 225 + 85787240 aaag-tttttactgcattttgactgcagcccctcaagaggtcaggtgtggaattttccccttgtggcatcatattggccttcaaaaagtgtgagattcttggagtactttggatttcaggtttttcaggttagggatgctcagcctgGACTAGTGACACCTCAGGGTGGTGCATTAATGA-CACAGAGATCTCACCTGTCCTGTTGACAAAGATAGTTTTAAAAGCC i chlSab2.chr25 I 336 C 0 s calJac3.chr19 14357600 191 - 49578535 caag-tttttaccgcattttgactacagcccatcatgaggtcaagtatggaa-tttccccctgtgggatcatgttggcctttaaaaagtttgggat-----------ttgggatttcagagtt-tagggttggggatgctcaGTGTG----------------------TGCATGAATGACCACGGAGCTCTTACGTGTCCTGTTGGTAAAGATGGCTTTTAAAACC i calJac3.chr19 C 0 I 311 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I a score=2254562.000000 s hg38.chr1_KI270759v1_alt 311166 842 + 425601 CCACTTTTA-TGAGTAATCTAAGCATGCAAGCAACTGTTGCTCAAGGTCCACAATGACACCGGGTCTCTGATTTGTTCATTCTCTTTATTGCCTCTGTGGGGAGGATTAGAGGGCTTTGTAGGCTGGGCTGCTGTGTGCGCAC----ACAAATGTATGTGCACATGGGCACACATCTGTGCTACACTCATCTGTCTACACATCTCATCAGACTCTTTAATCtgtttt--------tttgtttgtttgtttgttt--gtttgtttttaacactgagt----ctcgcactgtcacccaggctggagtgcagtggcgcaatctcaactcacttcaacttccacctcctgggttccccgcgattctcctgcctcagcctcctgagtagctgagatgacaggcgtccaccacaacacctggctaatttttgtgttttttagtagagacggggtttcaccatgttggccacgctggtctcgaactcctgacctcaagtgatccacccacctcggcctccccaaagtgctgggat-------------tacCATACCTAGCCTAATCTGCTTTCTTTTGACAATGCAAATGTTTTCTTTACATGTCATGGAATGGCTTAAATCAACTAATGCTGTATTTAGGGCTGTGTGGTGGATATGACTCTGGAGATCCATTCTTTGGGTGGCAGATGTGGGAAAAGAGGCTTAGGAAAGAACCTTGCTTCTAATGGAGCCACAGCCAGTCCCCTGCTGTCCCCAGCAGCGAAGCCCTGTGCAGCAAGGATGTCCA--CACACTACAGGGCTCTCATCTCCCGCTTGGTCAATAATGAAGTGGCAGTTTCATCTTTTTAGGTTTTTGTAATCTATATGTTTTTAAATGTT s panTro4.chr1 225067833 853 + 228333871 CCACTTTTA-TGTGTAATCTAAGCATGCAAGCAACTGTTGCTCAAGGTCCAGAATGACACCGGGTCTCTGATTTGTTCATTCACTTTATTGCCTCTGTGGGGAGGATTAGAGGGCTTTGTAGGCTGGGCTGCTGTGTGCGCACACAAACAAATGTATGTGCACATGGGCACACATCTGTGCTACACTCCTCTGTCTACACATCTCATCAGACTCTTTAATCtgtttttttgtttgtttgtttgtttgtttgttt--gtttgtttttaacactgagt----ctcgcactgtcacccaggctggagtgcagtggcgcaatctcagctcacttcaacctccacctcctgggttccccacgattctcctgcctcagcctcctgagtagctgagatgacaggcgtccaccacaacacctggctaatttttgtg-tttttagtagagacggggtttcaccatgttggccatgctggtctcgaactcctgacctcaagtgatccacccacctcggcctccccaaagtgctgggat-------------tacCATACCTAGCCTAGTCTGCTTTCTTTTGACAACGCAAATGTTTTCTTTACATGTCATGGAATGGCTTAAATCAACTAATGCTGTATTTAGGGCTGTGTGGTGGATATGACTCTGGAGATCCATTCTTTGGGTGGCAGATGTGGGAAAAGAGGCTTAGGAAAGAACCTTGCTTCTAATGGAGCCACAGCCAGTCCCCTGCTGTCCCCAGCAGCGAAGCCCTGTGCAGCAAGGATGTCCA--CACACTACAGGGCTCTCATCTCCCGCTTGGTCAATAATGAAGTGGCAGTTTCATCTTTTTAGGTTTTTGTAATCTATATGTTTTTAAATGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226436681 840 - 229942017 CCACTTTTATTGAGTAATCTAAGCATGCAAGCAACTGTTGCTCAACATCCAGAATGACACCAGGTCCCTGATTTGTTCATTCACTTTATTGCCTCTGTGGGGAGGATTAGGGGGCTTTGCAGGCTGAGCTGCTGTGTGCGCACGCAAACAAATGTATGTGCACATGGGCACACATCTGTGCTACACTCATCTGTCTACACATCTCATCAGACTCTTTAATCtgtttt-------------ttgtttgtttgttt--gtttgtttttaacactgagt----ctcgcactgtcacccaggctggagtgcagtggcgcaatctcagctcacttcaacctccacctcctgggttccccgcgattctcctgcctcagcctcccgagtagctgggattacaggcgtccaccacaacacctggctaatttttgtg-tttttagtagagacaggttttcaccatgttggtcacattggtcttgaactcctgacctcaagtgatctacccacctcggcct-cccaaagtgctgggat-------------tacCACACCCAGCCTAATCTGTCTTCTTTTGACAACGCAAATGTTTTCTTTCCATGTCGTGGAGTGACTTAAATCAACTAATGCTGTATTTAGGGCTGTGTGGTGGATATGACTCTGGAGATCCACTCTTTGGGTGGCAGATGTGGGAAAAGAGGCCTAGGAAAGAACCTTGCTTCTAATGGAGGTAGAGCCAGTCCCCTGCTGTCCCCAGCAGCAAAGCCCTGTGCAGCAAGGATGTCCA--CACACTGCAGGACTCTCATCTCCCGCTTGGTCAATAATGAAGTGGCAGTTTCATCTTTTTAGGTTTTTGTAATCTATATGTTTTTAAATGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140320702 829 - 143122389 CCGCTTTTATTGAGTAATCTAAGCATGCAAGCAGCTGTTGCTCAAGGTCCAGAATGACACCGGGTCTCTGATTTGTTCATTCACTTTATTGCCTCTGTGGGGAGGATTAGAGGGCTTTGTAGGCTGGGCTGCTGTGTGCACACACAAACAAATGTACATGCACATGGGCACACATCTGTGCTACACTCGTCTGTCTACACATCTCATCAGACTCTTTAATCTGtttt-----------------------gctt--gtttgtttttaacactgagt----ctcacactgtcacccaggctggagtgcagtggcgcaatctcagctcacttcaacctccacctcctgggttccacgcgattctcctgccccagcctcctgagtagctgggattacaggcgtccaccacaacacctggctaatttttgtg-tttttagtagagacggggttt-accatgttggccacgctggtctcgaactcctgacctcaagtgatccacccacctcggcct-cccaaactgctgggat-------------tacCACACCCAGCCTAATCTGCTTTCTTCTGACAACGCAAATGTTTTCTTTCCATGTCGTGGAATGGCTTAAATCAACTAATGCTGTATTTAGGGCTGTGTGGTGGATATGACTCTGGAGATCCATTTTCTGGGTGGCAGATGTGGGAAAAGAGGCCTAGGAAAGAATCTTGCTTCTAATGGAGGCAGAGCCAGTCCCCTGCTGTCCCTAGCAGCGAAGCCCTGTGCAGCAAGGATATCCA--CACACCGCAGGGCTCTCATCTCCTGCTTGCTCAATAATGAAGTGGCAGTTTCATCTTTTGAGGTTTTTGTAATCTATATGTTTGTAAATATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17032220 809 - 229590362 CCACTATTA-TGAGTAATCTAAGCATGCAAGCAACTGTTGCTCGAGGTGCAGAATGACACCAGTTCTCTGATATGTTCATTCACTTTCTTGCCTC--TGGGGAGGATGAGAGGGCTTTGTAGGCTGGGCTGCTGTGTGTCCACACAAACAAATGTATGTGCATGTGGGCACACGTCTGTGCTACACTCGTCTGTCTACATGTCTGATCAGACTCTTTAATCTGtttt-------------------tgttgttt--gtttg--tttaacactgagt----cttgcactgttgcccaggctggcgtgcagtggcacaatctcggctcccttcaaacttcacctcctgggttcca-gcgattcgcctgcctcagcctcccaagtagctgggattacaggcgtccaccaccacacctggctaatttttgtg-tttttagtagagatgggttttcaccatgttggccatgctggtctcgaactcctgacctcaagtgatccacccacctcggcct-cccaaagtgctgggat-------------tacCACACCCAGCCTAATCTGTTTTCTTTTGACAATGCAAATGTTTTCTTTACATGTTGTGGAATGGCTTAAATCAACTAATGCTGTATTTAGGGCTGTGTGGTGGATATAACTC-------------------TGGCAAATGTGGGAAAAGAGGCCTAGGAAAGAACCTTGCTTCTAATGGAGGCAGAGCCAGTCCCCTGCTGTCCCTAGCAGCAAAGCCCTGTGCAGCAAGGATGTCCA--CACACTGCAGGGCTCTCATCTCCTGCTTGGTCAATAATGAAATGGCAGTTTCATATTTTTAGGTTTTTGTAATCTGTATGTTTTTAAACGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223796078 809 - 227556264 CCACTATTA-TGAGTAATCTAAGCATGCAAGCAACTGTTGCTCGAGGTGCAGAATGACACCAGTTCTCTGATATGTTCATTCACTTTCTTGCCTC--TGGGGAGGATGAGAGGGCTTTGTAGGCTGGGCTGCTGTGTGTCCACACAAACAAATGTATGTGCATGTGGGCACATGTCTGTGCTACACTCGTCTGTCTACATGTCTGATCAGACTCTTTAATCTGtttt-------------------tgttgttt--gtttg--tttaacactgagt----cttgcactgttgcccaggctggagtgcagtggcacaatctcggctcacttcaaacttcacctcctgggttcca-gcgattcacctgcctcagcctcccaagtagctgggattacaggcgtccaccaccacacctggctaatttttgtg-tttttagtagagatgggttttcaccatgttggccatgctggtctcgaactcctgacctcaagtgatccacccacctcggcct-cccaaagtgctgggat-------------tacCACACCCAGCCTAATCTGTTTTCTTTTGACAACGCAAATGTTTTCTTTACATGTTGTGGAATGGCTTAAATCAACTAATGCTGTATTTAGGGCTGTGTGGTGGATATAACTC-------------------TGGCAAATGTGGGAAAAGAGGCCTAGGAAAGAACCTTGCTTCTAATGGAGGCAGAGCCAGTCCCCTGCTGTCCCTAGCAGCAAAGCCCTGTGCAGCAAGGATGTCCA--CACACTGCAGGGCTCTCATCTCCTGCTTGGTCAATAATGAAATGGCAGTTTCATATTTTTAGGTTTTTGTAATCTGTATGTTTTTAAACGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16846427 806 - 220367699 CCACTATTA-TGAGTAATCTAAGCATGCAAGCAACTGTTGCTCGAGGTGCAGAATGACACCAGTTCTCTGATATGTTTATTCACTTTCTTGCCTC--TGGGGAGGATGAGAGGGCTTTGTAGGCTGGGCTGCTGTGTGTCCACACAAACAAATGTATGTGCATGTGGGCACACGTCTGTGCTACACTCGTCTGTCTACATGTCTGATCAGACTCtttaatctgttt----------------------ttgttt--gtttg--tttaacactgagt----cttgcactgttgcccaggctggagtgcagtggcacaatctcggctcacttcaaacttcacctcctgggttcca-gcgattcacctgcctcagcctcccaagtagctgggattacaagcgtccaccaccacacctggctaatttttgtg-tttttagtagagatggattttcaccatgttggccatgctggtctcgaactcctgacctcaagcgatccacccacctcagcct-cccaaagtgctgggat-------------taccacacccagcctaatctgttttcttttgacaACACAAATGTTTTCTTTACCTGTTGTGGAATGGCTTAAATCAACTAATGCTGTATTTAGGGCTGTGTGGTGGATATAACTC-------------------TGGCAAATGTGGGAAAAGAGGCCTAGGAAAGAACCTTGCTTCTGATGGAGGCAGAGCCAGTCCCCTGCTGTCCCTCGCAGCAAAGCCCTGTGCAGCAAGGATGTCCA--CACACTGCAGGGCTCTCATCTCCTGCTTGGTCAATAATGAAATGGCAGTttcatatttttaggtttttgtaaTCTGTATGTTTTTAAACGTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82645949 808 + 85787240 CCACTGTTA-TGAGTAATCTAAGCATGCAAGCAACTGTTGCTCGAGGTGCAGAAT-ACACCAGTTCTCTGATATGTTCATTCACTTTATTGCCTC--TGGGGAGGATGAGAGGGCTTCGTAGGCTGGGCTGCTGTGTGTCCACACAAACCAATGTATGTGCATGTGGGCACACATCTGTGCTACACTCGTCTGTCTACACGTCTGATCAGACTCTTTAATCTGtttt-------------------tgttgttt--gtttg--tttaacactgagt----cttgcactgttgcccaggctggaatgcagtggtacaatctcggctcacttcaaacttcacctcctgggttcca-gcgattcacctgcctcagcctcccaagtagctgggattacaggcgtccaccaccacacctggctaatttttgtg-tttttagtagagatgggttttcaccatgttggccatgctggtctcgaactcctgacctcaagtgatccacccacctcggcct-cccaaagtgctgggat-------------tacCACACCCAGCCTAATCTGTTTTCTTTTGACAACACAAATGTTTTCTTTACATGTTGTGGAATGGCTTAAATCAACTAATGCTGTATTTAGGGCTGTGTGGTGGATATAACTC-------------------TGGCAAATGTGGGAAAAGAGGCCTAGGAAAGAACCTTGCTTCTAATGGAGGCAGAGCCAGTCCCCTGCTGTCCCGAGCAGCAAAGCCCTGTGCAGCAAGGATGTCCA--CACACTGCAGGGCTCTCATCTCCTGCTTGGTCAATAATGAAATGGCAGTTTCATATTTTTAGGTTTTTGTAATCTGTATGTTTTTAAATGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14358102 804 - 49578535 TCACTTTTA-TGAGTAATCTAAGCTTGCAAGCAACTGTTGCTCAAGGCCCAGACCGACACTGG-TCTCTAATCTGTTCATTCACTGTATTGCCTC--CGGGGAAGATTCGAGGGCTTTGTAGGCTGGGCTGCTCCGTGTGCACATGA------------------------------GCGCTACACTCGTCTGTTTACACATGGGATCAGACTCTTTACTCTGTTTT--------------------GTTGTTTGGGtttgtttttaataccgagtgtcgcttgctctgttgcccaggctggaatgcagcggtgtaatctcagctcactgtcacctcc-ccttctgagttcca-gcgatttgcct-cctcagcctcgttagttgctgggattacaggcgtccaccaccacgcctggctaatttttgtg-tttttagtagagatggggttttaccatgtggaccagactggtcttgaactcttgacctcacgtga---acccctctcagcct-cccagaatgctgggatcacaggcgtgagccaccacacttggccTCATCTGTTGTCTTTAGCCAATGCAAATGTTTTCTTTACATGTCATGGAATGACTT-AATCAGCTGATGCTGTAGGGAGGGCTGCGTTGTGGATATGACTCTGGAGAGCCATTCTGTGGGTGGCAGACATAGGAAAAGAGGCCTAGGAAAGAACCTTGCTTCTACTGGAGGCAGAGCCCTTCCCCTGCTGTCCCCAGCAGCAAA--------CAGCAGGGATGTATGTCCACACTGCAGAGTTCACATCTCCCGCCGGGTCCATGAGGAAGTGGCAGTTTCATATTCT-AGGTTTTTGTCATCTGTATGtatatatgtatt i calJac3.chr19 I 311 I 346 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I a score=1598781.000000 s hg38.chr1_KI270759v1_alt 312008 551 + 425601 GGCCAGGAGACACTATTCTGAAGAGTGCAGCCTGGAATTCCCATCACCGCCTCCGTTTCTAATCTTCTCAAGCCTCCTGGCCACTCTCAGCAGGTAACTAGCATCTTAGTCAATGAGAAGACAGAGCTGACCTGGTGCATTCCTCAACTTCTCTTCTTTTGGTTTCATAGTCTCCTGGTCCCTTTACCTCAGTTTCCCCCCTGCTCCTTCCCACAGGCCTGCTGCTCCCG-TCTCCTGGCATTCTTCCTCCTGCCCCTTCTGCCTCTTCTGGGACCTCACCAATTGGGACCCCCTCAGTGGTCTTTTCATGCTTATGTTTTCAGCCTTTCCTCCCACCAAAGTCAGGGTTACAgaaggaagagaaggaggcagggagggagggaaaaggaaaggaaaggaaCCACAATGGCACCTTGCCTCTGCCACGCTCCTCTCCGATCGCCTCCTCAACAAAGA-CGTCAGATT--CCCCTCTTTGTAAT-------------G----TCTTCTTTGAATTTCAGCAGTGTGGGGGATGTT-ATGCTTTTGCCTTACTCCGCCTTATATTTTGGCTGTTT s panTro4.chr1 225068686 551 + 228333871 GGCCAGGAGACACTATTCTGAAGAGTGCAGCCTGGAATTCCCATCACCGCATCCGTTTCTAATCTTCTCAAGCCTCCTGGCCACTCTCAGCAGGTAACTAGCATCTTAGTCAATGAGAAGACAGAGCTGACCTGGTGCATTCCTCAACTTCTCTTCTTTTGGTTTCATAGTCTCCTGGTCCCTTTACCTCAGTTTCCCCCCTGCTCCTTCCCACAGGCCTGCTGCTCCCG-TCTCCTGGCATTCTTCCTCCTGCCCCTTCTGCCTCTTCTGGGACCTCACCAATTGGGACCCCGTCAGTGGTCTTTTCATGCTTATGTTTTCAGCCTTTCCTCCCACCAAAGTCAAGGTTACAgaaggaagagaaggaggcagggagggagggaaaaggaaaggaaaggaACCACAACGGCACCTTGCCTCTGCCACGCTCCTCTCCGATCGCCTCCTCAACAAAGA-TGTCAGATT--CCCCTCTTTGTAAT-------------G----TCTTCTTTGAATTTCAGCAGTGTGGGGGATGTT-ATGCTTTTGCCTTACTCCGCCTTATATTTTGGCTGTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226437521 549 - 229942017 GGCCAAGAGACACTATTCTGAAGAGTGCAGCCTGGAATTCCCATCACCGCATCCGTTTCTAA---TCTCAAGCCTCCTGGCAGCTCTCAGCAGGTAACTGGCATCCTAGTCAATGAGAAGACAGAGCTGACCTGGTGCATTCCTCAACTTCTCTCCTTTTGGTTTCATAGTCTCCTGGTCCCTTTACCTCAGTTTCCTCCCTGCTCCTTCCCACAGGCCTGCTGCTCCCG-TCTCCTGGCATTCTTCCTCCTGCCCCTTCTGCCTCTTCTGGGACCTCACCAATTGGGACCCCGTCAGTGGTCTTTTCATGCTTATGTTTTTAGCCTTTCCTCCCACCAAAGTCAGGGTTACAgaaggaagagaaggaggcagggagggagggaaaaggaaaggaaaggaACCACAACAGCATCTTGCTTCTGCCACGCTCCTCTCTAATCGCCTCCTCCACAAAGA-CATCAGATT-CCCCCTATTTGTAAT-------------G----TCTTCTTTGAATTTCAGCAGTGTGGGGGATGTT-ACGCTTTTGCCTTACTCCGCCTTATATTTTGGCTGTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140321531 551 - 143122389 GGCCAGGAGACACTGTTCTGAAGAGTGCAGCCTGGAATTCCCATCACTGCATCCGTTTCTAATCTTCTCAAGCCTCCTGGCTGCTCTCAGCAGGTAACTGGCATCCTAGTCAATGAGAAGACAGAGCTGACCTGGTGCATTCCTCAACTTCTCTCTTTTTGGTTTCACAGTCTCCTGGTCCCTGTACCTCAGTATcccccctgctccttcccacaggcctgctgctcccgccctcctggcatccttcctcctgccccttctgcctcttctgGGACCTCATCAACTGGGA-CCCGCCAGTGGCCTTTTCATGCTTATGTTTTCAGCC-TTCCTCCCACCAAAGTCAGGGTCACAgaaggaagagaaggaggcagggagggagggaaaaggaaaggaaaggaaCCGCAACGGCACCTGGCCTCTGCCATGCTCCTCTCCGATCACCTCCTCAACAAAGA-CGTCAGATT-CCCCCTCTTCGTAAT-------------G----TCTTCTTTGAATTTCAGCAGTGTGGGGGATGTT-ACGCTTTTGCCTTACTCCGCCTTATATTTTGGCTGTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17033029 554 - 229590362 GGCCAGGAGATACTATTCTGAAGAGTACAGCCTGGAATTCCCATCACTGCATCCATTTCTAATCTTCTCAAGCCTCCTGGCCACTCTCAGCAGGTAACTGGCATCCAAGCCAATGAGAAGACAGAGCTGACCTGGTGCACTCCTCAACTTCTCTCCTTTTGGCTTCACAGTCTCCTGGTTCCTGTACCTCAGTTTCCCCCCTGCTCCTTCCCACAGGCCTGCTGCTCCTG-TCTCCTGGCGTTCTTCCTCCTGCCCCTTCTGCCTCTTCTGGGACCTCACCAACTGGGACCCCATCAGTGGTCTTTTCATGCTTATGTATTCAGCCTTTCCTCCCACCAAAGTCAGGGCTGCAGAaggaagggaaggaggcagggagggagggaAAAGGAAAGGAAAGGAACCACAACAGCACCTTGCCTCTGCCACGCTCCTCTCTGATCGCCTCCTCCGCAAAGA-GTCCAGATTCCCCTCTCTTTGTAAT-------------G----TCTTCTTTGAATTTCAGCAGTGTGGGGGATGTTAACGCCTTTGCCTTACTCTGCcttatattttggctgttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223796887 554 - 227556264 GGCCAGGAGATACTATTCTGAAGAGTACAGCCTGGAATTCCCATCACTGCATCCATTTCTAATCTTCTCAAGCCTCCTGGCCACTCTCAGCAGGTAACTGGCATCCAAGCCAATGAGAAGACAGAGCTGACCTGGTGCACTCCTCAACTTCTCTCCTTTTGGCTTCACAGTCTCCTGGTTCCTGTACCTCAGTTTCCCCCCTGCTCCTTCCCACAGGCCTGCTGCTCCTG-TCTCCTGGCGTTCTTCCTCTTGCCCCTTCTGCCTTTTCTGGGACCTCACCAACTGGGACCCCATCAGTGGTCTTTTCATGCTTATGTATTCAGCCTTTCCTCCCACCAAAGTCAGGGCTGCAGAaggaagggaaggaggcagggagggagggaaaaggaaaggaaaggaaCCACAACAGCACCTTGCCTCTGCCACGCTCCTCTCTGATCGCCTCCTCCGCAAAGA-GTCCAGATTCCCCTCTCTTTGTAAT-------------G----TCTTCTTTGAATTTCAGCAGTGTGGGGGATGTTAACGCCTTTGCCTTACTCTGCCTTATATTTTGGCTGTTT i macFas5.chr1 C 0 I 7 s papAnu2.chr1 16847233 554 - 220367699 GGCCAGGAGATACTATTCTGAAGAGTACAGCCTGGAATTCCCATCACCGCATCCGTTTCTAATCTTCTCAAGCCTCCTGGCCGCTCTCAGCAGGTAACTGGCATCCAAGCCAATGAGAAGACAGAGCTGACCTGGTGCACTCCTCAACTTCTCTCCTTTTGGCTTCACAGTCTCCTGGTtcctgtacctcagtttccccccTGCTCCTTCCCACAGGCCTGCTGCTCCTG-TCTCCTGGCGTTCTTCCTCCTGCCCCTTCTGCCTCTTCTGGGACCTCACCAACTGGGACCCCATCAGTGGTCTTTTCATGCTTATGTATTCAGCCTTTCCTCCCACCAAAGTCAGGGCtgcagaaggaagggaaggaggcagggagggagggaaaaggaaaggaaaggaaccaCAACAGCACCTTGCCTCTGCCACGCTCCTCTCTGATCGCCTCCTCCACAAAGA-GTCCAGATTCCCCTCtctttgtaat-------------g----tcttctttgaaTTTCAGCAGTGTGGGGGATGTTAACGCCTTTGCCTTACTCTGCCTTATATTTTGGCTGTTT i papAnu2.chr1 C 0 I 7 s chlSab2.chr25 82646757 564 + 85787240 GGCCAGGAGACACTATTCTGAAGCATACAGCCTGGAATTTCCATCACCGCATCCGTTTCTAATCTTCTCCAGCCTCCTGGCCGCTCTCAGCAGGTAACTGGCATCCCAGCCAATGAGCAGACAGAGCTGACCTGGTGCCTTCCTCAACTTCCATCCTTTTGGCTTCACAGTCTCCTGGTTCCTGTACCTCAGTTT-TCCcctgcttcttcccacaggcctgctgctcctg-tctcctggcgttctgcctcctgccccttctgcctcTTCTGGGACCTCACCAACTGGGACCCCATCAGCGGTCTTTTCATGCTTATGTATTCAGCCTTTCCTCCCACCAAAGTCAGGGCTGCAgaaggaagggaaggaggcagggagggagggaaaaggaaagaaaaggaaCCACAACAGCACCTTGCCTCTGCCACGCTCCTCTCCGATCGCCTCCTCCGC--AGA-GTCCAGATTCCCCTCTCTTTGTAACTTTGAATTTCAAAG----TCTTCTTTGAATTTCAGCAGTGTGGGGGATGTTAACGCCTTTGCCTTACTCTGCCTTATATTTTGGCTGTTT i chlSab2.chr25 C 0 I 10 s calJac3.chr19 14359252 542 - 49578535 GGCCAG--GACACTGTTCTGAAGAGTGCAGCCTGGAATTCCCACC-CCGCATCCATTTCTAATCTTCTCAAGCCTCCCGCCCACTCTCAGCAGGTAACTGGCATCCTATTCAATGAGAAGTCAGAGCTGATCGGGTACATTCCTCAATG---CTCCTTTCGGCTTCACAATCTCCTGGTCCCCGTGCCTCAGTTT-CCCTCTGCTCCTTCCCGCAGGCCTGCTGCTCCCT-TCTCCTGGCACTTTTCCTCCTGCCCCTTCTGCCTCTTCTGGGTCCTCACCAGCTGGAACCCCGTCAGCGGCCTCTCCATGCTTACATTTTCAGTCTCTTCGCCCACTAAAGTCAGAGCTGCAGACAGAAGGGAAGGAGGCAGGGAGGGAGGGAAAAGGAA-------GGACAACAGCAACACCTGGTCTCTACCACGCTCCTCTCCAGTTGCCTCCTCCACGAAGACCTCCAGATT-CCCCCTCTTTGTAAT-------------GTCTTTCTTCTTTGAAGCTCAGCAGTTTGTGGGTTGTT-ACACTTTT-CCCTACTCTGCCTTATTTTttggctgttt i calJac3.chr19 I 346 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I a score=25541.000000 s hg38.chr1_KI270759v1_alt 312559 30 + 425601 GTGAGCTAGTCCAAGCCCTATTGGACTATA s panTro4.chr1 225069237 30 + 228333871 GTGAGCTAGTCCAAGCCCTATTGGACTATA i panTro4.chr1 C 0 T 21 s ponAbe2.chr1 226438070 30 - 229942017 GTGAGCTTGTCCAAGCCCTATTGGACTATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322082 30 - 143122389 GTGAGCTTGTCCAAGCCCTGTTGGACTATA i nomLeu3.chr5 C 0 T 23 s calJac3.chr19 14359794 30 - 49578535 gtgagcttgtccaagccctgttagactgta i calJac3.chr19 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647321 10 + 85787240 I e papAnu2.chr1 16847787 7 - 220367699 I e macFas5.chr1 223797441 7 - 227556264 I a score=3931.000000 s hg38.chr1_KI270759v1_alt 312589 21 + 425601 GGTGCCTTGA-GAAAGAGTGCC s ponAbe2.chr1 226438100 21 - 229942017 GGTTCCTTGA-GACAGAGTGCC i ponAbe2.chr1 C 0 C 0 s calJac3.chr19 14359824 22 - 49578535 ggttccttgaggacagagagcc i calJac3.chr19 C 0 I 25 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647321 10 + 85787240 I e papAnu2.chr1 16847787 7 - 220367699 I e macFas5.chr1 223797441 7 - 227556264 I e nomLeu3.chr5 140322112 23 - 143122389 T e panTro4.chr1 225069267 21 + 228333871 T a score=9516.000000 s hg38.chr1_KI270759v1_alt 312610 115 + 425601 ACAGTGCCAGGGCTGTGTCTGCTGCATGCTGTTTGTGAGCTTGTCCAAGccctattagactataggttccttgagacagagtgccaccgtcctggggctatgtccgcagcgtcag s ponAbe2.chr1 226438121 115 - 229942017 ACAGTGCTGGGGCTGTGTCCGCTGCGTGCTGTTTGTGAGCTTGTCCAAGTCCTGTTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGCGTCAG i ponAbe2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647321 10 + 85787240 I e papAnu2.chr1 16847787 7 - 220367699 I e macFas5.chr1 223797441 7 - 227556264 I e nomLeu3.chr5 140322112 23 - 143122389 T e panTro4.chr1 225069267 21 + 228333871 T a score=1386.000000 s hg38.chr1_KI270759v1_alt 312725 2 + 425601 ta s ponAbe2.chr1 226438236 2 - 229942017 TG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322089 2 - 143122389 TG i nomLeu3.chr5 T 23 C 0 s macFas5.chr1 223797448 2 - 227556264 TG i macFas5.chr1 I 7 C 0 s papAnu2.chr1 16847794 2 - 220367699 TG i papAnu2.chr1 I 7 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647321 10 + 85787240 I e panTro4.chr1 225069267 21 + 228333871 T a score=92330.000000 s hg38.chr1_KI270759v1_alt 312727 68 + 425601 tccaaggcctattagactataggtTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGCG s panTro4.chr1 225069246 68 + 228333871 TCCAAGCCCTATTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGCG i panTro4.chr1 T 21 C 0 s ponAbe2.chr1 226438238 68 - 229942017 TCCAAGCCCTATTAGATTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGCG i ponAbe2.chr1 C 0 T 203 s nomLeu3.chr5 140322091 68 - 143122389 TCCAAGCCCTGTTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGCG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797450 68 - 227556264 TCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847796 68 - 220367699 TCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGCA i papAnu2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647321 10 + 85787240 I a score=5730.000000 s hg38.chr1_KI270759v1_alt 312795 6 + 425601 TCAGTG s panTro4.chr1 225069314 6 + 228333871 TCAGTG i panTro4.chr1 C 0 T 74 s nomLeu3.chr5 140322159 6 - 143122389 TCAGTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797518 6 - 227556264 TCAGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847864 6 - 220367699 TCAGTG i papAnu2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647321 10 + 85787240 I e ponAbe2.chr1 226438306 203 - 229942017 T a score=205.000000 s hg38.chr1_KI270759v1_alt 312801 1 + 425601 T s panTro4.chr1 225069246 1 + 228333871 T i panTro4.chr1 T 74 C 0 s nomLeu3.chr5 140322165 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797524 1 - 227556264 C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847870 1 - 220367699 C i papAnu2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647321 10 + 85787240 I e ponAbe2.chr1 226438306 203 - 229942017 T a score=6747.000000 s hg38.chr1_KI270759v1_alt 312802 7 + 425601 CCAAGCC s panTro4.chr1 225069247 7 + 228333871 CCAAGCC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140322166 7 - 143122389 TCAGGTC i nomLeu3.chr5 C 0 T 74 s macFas5.chr1 223797525 7 - 227556264 TCAGGTC i macFas5.chr1 C 0 T 74 s papAnu2.chr1 16847871 7 - 220367699 TCAGGTC i papAnu2.chr1 C 0 T 74 s chlSab2.chr25 82647331 7 + 85787240 CCAAGCC i chlSab2.chr25 I 10 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e ponAbe2.chr1 226438306 203 - 229942017 T a score=19303.000000 s hg38.chr1_KI270759v1_alt 312809 16 + 425601 CTATTAGACTATAGGG s panTro4.chr1 225069254 16 + 228333871 CTATTGGACTATAGGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140322099 16 - 143122389 CTGTTGGACTATAGGT i nomLeu3.chr5 T 74 C 0 s macFas5.chr1 223797458 16 - 227556264 CTATTAGACTATAGGT i macFas5.chr1 T 74 C 0 s papAnu2.chr1 16847804 16 - 220367699 CTATTAGACTATAGGT i papAnu2.chr1 T 74 C 0 s chlSab2.chr25 82647338 16 + 85787240 CTATTAGACTGTAGGT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e ponAbe2.chr1 226438306 203 - 229942017 T a score=82266.000000 s hg38.chr1_KI270759v1_alt 312825 42 + 425601 TCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTG s panTro4.chr1 225069270 42 + 228333871 TCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTG i panTro4.chr1 C 0 T 82 s ponAbe2.chr1 226438103 42 - 229942017 TCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTG i ponAbe2.chr1 T 203 C 0 s nomLeu3.chr5 140322115 42 - 143122389 TCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797474 42 - 227556264 TCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847820 42 - 220367699 TCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82647354 42 + 85787240 TCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTTTCTGCTG i chlSab2.chr25 C 0 T 82 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=1591.000000 s hg38.chr1_KI270759v1_alt 312867 3 + 425601 TGT s ponAbe2.chr1 226438145 3 - 229942017 CGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322157 3 - 143122389 CGT i nomLeu3.chr5 C 0 T 85 s macFas5.chr1 223797516 3 - 227556264 CAT i macFas5.chr1 C 0 T 85 s papAnu2.chr1 16847862 3 - 220367699 CAT i papAnu2.chr1 C 0 T 85 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647396 82 + 85787240 T e panTro4.chr1 225069312 82 + 228333871 T a score=155267.000000 s hg38.chr1_KI270759v1_alt 312870 84 + 425601 GCTGTTTGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACACTCCTGGGGCTGTGTCCACTGCA s panTro4.chr1 225069230 84 + 228333871 GCTGTTTGTGAGCTAGTCCAAGCCCTATTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGCG i panTro4.chr1 T 82 C 0 s ponAbe2.chr1 226438148 84 - 229942017 GCTGTTTGTGAGCTTGTCCAAGTCCTGTTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGCG i ponAbe2.chr1 C 0 I 74 s nomLeu3.chr5 140322075 84 - 143122389 GCTGTTTGTGAGCTTGTCCAAGCCCTGTTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGCG i nomLeu3.chr5 T 85 C 0 s macFas5.chr1 223797434 84 - 227556264 GCTGTTTGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGCA i macFas5.chr1 T 85 C 0 s papAnu2.chr1 16847780 84 - 220367699 GCTGTTTGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGCA i papAnu2.chr1 T 85 C 0 s chlSab2.chr25 82647314 84 + 85787240 GCTGTTTGTGAGCTTGCCCAAGCCCTATTAGACTGTAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTTTCTGCTGCA i chlSab2.chr25 T 82 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=12033.000000 s hg38.chr1_KI270759v1_alt 312954 6 + 425601 TCAGTG s panTro4.chr1 225069314 6 + 228333871 TCAGTG i panTro4.chr1 C 0 T 74 s ponAbe2.chr1 226438306 6 - 229942017 TCAGTG i ponAbe2.chr1 I 74 C 0 s nomLeu3.chr5 140322159 6 - 143122389 TCAGTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797518 6 - 227556264 TCAGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847864 6 - 220367699 TCAGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82647398 6 + 85787240 TCAGTG i chlSab2.chr25 C 0 T 73 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=294.000000 s hg38.chr1_KI270759v1_alt 312960 1 + 425601 T s panTro4.chr1 225069246 1 + 228333871 T i panTro4.chr1 T 74 C 0 s ponAbe2.chr1 226438312 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322165 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797524 1 - 227556264 C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847870 1 - 220367699 C i papAnu2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647404 73 + 85787240 T a score=9687.000000 s hg38.chr1_KI270759v1_alt 312961 7 + 425601 CCAAGCC s panTro4.chr1 225069247 7 + 228333871 CCAAGCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226438313 7 - 229942017 CCAAGCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322166 7 - 143122389 TCAGGTC i nomLeu3.chr5 C 0 T 74 s macFas5.chr1 223797525 7 - 227556264 TCAGGTC i macFas5.chr1 C 0 T 74 s papAnu2.chr1 16847871 7 - 220367699 TCAGGTC i papAnu2.chr1 C 0 T 74 s chlSab2.chr25 82647331 7 + 85787240 CCAAGCC i chlSab2.chr25 T 73 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=97600.000000 s hg38.chr1_KI270759v1_alt 312968 50 + 425601 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGT s panTro4.chr1 225069254 50 + 228333871 CTATTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226438320 50 - 229942017 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGT i ponAbe2.chr1 C 0 I 108 s nomLeu3.chr5 140322099 50 - 143122389 CTGTTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGT i nomLeu3.chr5 T 74 C 0 s macFas5.chr1 223797458 50 - 227556264 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGT i macFas5.chr1 T 74 C 0 s papAnu2.chr1 16847804 50 - 220367699 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGT i papAnu2.chr1 T 74 C 0 s chlSab2.chr25 82647338 50 + 85787240 CTATTAGACTGTAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=8058.000000 s hg38.chr1_KI270759v1_alt 313018 7 + 425601 GTCTGCT s panTro4.chr1 225069304 7 + 228333871 GTCCGCT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140322149 7 - 143122389 GTCCGCT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797508 7 - 227556264 GTCTGCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847854 7 - 220367699 GTCTGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82647388 7 + 85787240 TTCTGCT i chlSab2.chr25 C 0 T 81 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e ponAbe2.chr1 226438370 108 - 229942017 I a score=2591.000000 s hg38.chr1_KI270759v1_alt 313025 4 + 425601 ACGT s panTro4.chr1 225069311 4 + 228333871 GCGT i panTro4.chr1 C 0 T 85 s nomLeu3.chr5 140322156 4 - 143122389 GCGT i nomLeu3.chr5 C 0 T 85 s macFas5.chr1 223797515 4 - 227556264 GCAT i macFas5.chr1 C 0 T 85 s papAnu2.chr1 16847861 4 - 220367699 GCAT i papAnu2.chr1 C 0 T 85 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647395 81 + 85787240 T e ponAbe2.chr1 226438370 108 - 229942017 I a score=12550.000000 s hg38.chr1_KI270759v1_alt 313029 14 + 425601 GCTGTTGGTGAGCT s panTro4.chr1 225069230 14 + 228333871 GCTGTTTGTGAGCT i panTro4.chr1 T 85 C 0 s nomLeu3.chr5 140322075 14 - 143122389 GCTGTTTGTGAGCT i nomLeu3.chr5 T 85 C 0 s macFas5.chr1 223797434 14 - 227556264 GCTGTTTGTGAGCT i macFas5.chr1 T 85 C 0 s papAnu2.chr1 16847780 14 - 220367699 GCTGTTTGTGAGCT i papAnu2.chr1 T 85 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647395 81 + 85787240 T e ponAbe2.chr1 226438370 108 - 229942017 I a score=51026.000000 s hg38.chr1_KI270759v1_alt 313043 40 + 425601 TGTCCAAGCCCTATTAAACTATGGGTTCCTTGAGACAGAC s panTro4.chr1 225069244 40 + 228333871 AGTCCAAGCCCTATTGGACTATAGGTTCCTTGAGACAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226438478 40 - 229942017 TGTCCAAGCCCTGTTAGACCATAGGTTCCTTGAGACAGAG i ponAbe2.chr1 I 108 T 148 s nomLeu3.chr5 140322089 40 - 143122389 TGTCCAAGCCCTGTTGGACTATAGGTTCCTTGAGACAGAG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797448 40 - 227556264 TGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847794 40 - 220367699 TGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAG i papAnu2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647395 81 + 85787240 T a score=20424.000000 s hg38.chr1_KI270759v1_alt 313083 22 + 425601 TGCCACAGTGCTGGTGCTGTGT s panTro4.chr1 225069284 22 + 228333871 TGCCACAGTGCTGGGGCTGTGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140322129 22 - 143122389 TGCCACAGTGCTGGGGCTGTGT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797488 22 - 227556264 TGCCACAGTGCTGGGGCTGTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847834 22 - 220367699 TGCCACAGTGCTGGGGCTGTGT i papAnu2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647395 81 + 85787240 T e ponAbe2.chr1 226438518 148 - 229942017 T a score=9308.000000 s hg38.chr1_KI270759v1_alt 313105 7 + 425601 CCGCTGC s panTro4.chr1 225069306 7 + 228333871 CCGCTGC i panTro4.chr1 C 0 T 83 s ponAbe2.chr1 226438370 7 - 229942017 CCGCTGC i ponAbe2.chr1 T 148 C 0 s nomLeu3.chr5 140322151 7 - 143122389 CCGCTGC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797510 7 - 227556264 CTGCTGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847856 7 - 220367699 CTGCTGC i papAnu2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647395 81 + 85787240 T a score=1097.000000 s hg38.chr1_KI270759v1_alt 313112 2 + 425601 AT s ponAbe2.chr1 226438377 2 - 229942017 GT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322158 2 - 143122389 GT i nomLeu3.chr5 C 0 T 85 s macFas5.chr1 223797517 2 - 227556264 AT i macFas5.chr1 C 0 T 85 s papAnu2.chr1 16847863 2 - 220367699 AT i papAnu2.chr1 C 0 T 85 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647395 81 + 85787240 T e panTro4.chr1 225069313 83 + 228333871 T a score=157302.000000 s hg38.chr1_KI270759v1_alt 313114 83 + 425601 GCTGTTGGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGC s panTro4.chr1 225069230 83 + 228333871 GCTGTTTGTGAGCTAGTCCAAGCCCTATTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGC i panTro4.chr1 T 83 C 0 s ponAbe2.chr1 226438379 83 - 229942017 GCTGTTTGTGAGCTTGTCCAAGCCCTGTTAGACCATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322075 83 - 143122389 GCTGTTTGTGAGCTTGTCCAAGCCCTGTTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGC i nomLeu3.chr5 T 85 C 0 s macFas5.chr1 223797434 83 - 227556264 GCTGTTTGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGC i macFas5.chr1 T 85 C 0 s papAnu2.chr1 16847780 83 - 220367699 GCTGTTTGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGC i papAnu2.chr1 T 85 C 0 s chlSab2.chr25 82647314 83 + 85787240 GCTGTTTGTGAGCTTGCCCAAGCCCTATTAGACTGTAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTTTCTGCTGC i chlSab2.chr25 T 81 T 83 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=1659.000000 s hg38.chr1_KI270759v1_alt 313197 2 + 425601 GT s panTro4.chr1 225069313 2 + 228333871 GT i panTro4.chr1 C 0 T 85 s ponAbe2.chr1 226438462 2 - 229942017 AT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322158 2 - 143122389 GT i nomLeu3.chr5 C 0 T 85 s macFas5.chr1 223797517 2 - 227556264 AT i macFas5.chr1 C 0 T 85 s papAnu2.chr1 16847863 2 - 220367699 AT i papAnu2.chr1 C 0 T 85 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647397 83 + 85787240 T a score=167447.000000 s hg38.chr1_KI270759v1_alt 313199 90 + 425601 GCTGTTGGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTCCTGGGGCTGTGTCCACTGCATCAGTG s panTro4.chr1 225069230 90 + 228333871 GCTGTTTGTGAGCTAGTCCAAGCCCTATTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGCGTCAGTG i panTro4.chr1 T 85 T 74 s ponAbe2.chr1 226438464 90 - 229942017 GCTGTTTGTGAGCTTGTCCAAGCCCTGTTAGACCATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGCGTCAGTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322075 90 - 143122389 GCTGTTTGTGAGCTTGTCCAAGCCCTGTTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCCGCTGCGTCAGTG i nomLeu3.chr5 T 85 C 0 s macFas5.chr1 223797434 90 - 227556264 GCTGTTTGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGCATCAGTG i macFas5.chr1 T 85 C 0 s papAnu2.chr1 16847780 90 - 220367699 GCTGTTTGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCTGCTGCATCAGTG i papAnu2.chr1 T 85 C 0 s chlSab2.chr25 82647314 90 + 85787240 GCTGTTTGTGAGCTTGCCCAAGCCCTATTAGACTGTAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTTTCTGCTGCATCAGTG i chlSab2.chr25 T 83 T 73 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=294.000000 s hg38.chr1_KI270759v1_alt 313289 1 + 425601 T s panTro4.chr1 225069246 1 + 228333871 T i panTro4.chr1 T 74 C 0 s ponAbe2.chr1 226438554 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322165 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797524 1 - 227556264 C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847870 1 - 220367699 C i papAnu2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647404 73 + 85787240 T a score=9687.000000 s hg38.chr1_KI270759v1_alt 313290 7 + 425601 CCAAGCC s panTro4.chr1 225069247 7 + 228333871 CCAAGCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226438555 7 - 229942017 CCAAGCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322166 7 - 143122389 TCAGGTC i nomLeu3.chr5 C 0 T 74 s macFas5.chr1 223797525 7 - 227556264 TCAGGTC i macFas5.chr1 C 0 T 74 s papAnu2.chr1 16847871 7 - 220367699 TCAGGTC i papAnu2.chr1 C 0 T 74 s chlSab2.chr25 82647331 7 + 85787240 CCAAGCC i chlSab2.chr25 T 73 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=102196.000000 s hg38.chr1_KI270759v1_alt 313297 54 + 425601 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCC s panTro4.chr1 225069254 54 + 228333871 CTATTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226438562 54 - 229942017 CTATTAGACTATAGGTTCCTCGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCC i ponAbe2.chr1 C 0 T 316 s nomLeu3.chr5 140322099 54 - 143122389 CTGTTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCC i nomLeu3.chr5 T 74 C 0 s macFas5.chr1 223797458 54 - 227556264 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCT i macFas5.chr1 T 74 C 0 s papAnu2.chr1 16847804 54 - 220367699 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCT i papAnu2.chr1 T 74 C 0 s chlSab2.chr25 82647338 54 + 85787240 CTATTAGACTGTAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTTTCT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=22032.000000 s hg38.chr1_KI270759v1_alt 313351 12 + 425601 ACTGCATCAGTG s panTro4.chr1 225069308 12 + 228333871 GCTGCGTCAGTG i panTro4.chr1 C 0 T 74 s ponAbe2.chr1 226438300 12 - 229942017 GCTGCGTCAGTG i ponAbe2.chr1 T 316 C 0 s nomLeu3.chr5 140322153 12 - 143122389 GCTGCGTCAGTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797512 12 - 227556264 GCTGCATCAGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847858 12 - 220367699 GCTGCATCAGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82647392 12 + 85787240 GCTGCATCAGTG i chlSab2.chr25 C 0 T 73 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=294.000000 s hg38.chr1_KI270759v1_alt 313363 1 + 425601 T s panTro4.chr1 225069246 1 + 228333871 T i panTro4.chr1 T 74 C 0 s ponAbe2.chr1 226438312 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322165 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797524 1 - 227556264 C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847870 1 - 220367699 C i papAnu2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647404 73 + 85787240 T a score=9687.000000 s hg38.chr1_KI270759v1_alt 313364 7 + 425601 CCAAGCC s panTro4.chr1 225069247 7 + 228333871 CCAAGCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226438313 7 - 229942017 CCAAGCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322166 7 - 143122389 TCAGGTC i nomLeu3.chr5 C 0 T 74 s macFas5.chr1 223797525 7 - 227556264 TCAGGTC i macFas5.chr1 C 0 T 74 s papAnu2.chr1 16847871 7 - 220367699 TCAGGTC i papAnu2.chr1 C 0 T 74 s chlSab2.chr25 82647331 7 + 85787240 CCAAGCC i chlSab2.chr25 T 73 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=91678.000000 s hg38.chr1_KI270759v1_alt 313371 47 + 425601 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGC s panTro4.chr1 225069254 47 + 228333871 CTATTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226438320 47 - 229942017 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGC i ponAbe2.chr1 C 0 I 242 s nomLeu3.chr5 140322099 47 - 143122389 CTGTTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGC i nomLeu3.chr5 T 74 C 0 s macFas5.chr1 223797458 47 - 227556264 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGC i macFas5.chr1 T 74 C 0 s papAnu2.chr1 16847804 47 - 220367699 CTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGC i papAnu2.chr1 T 74 C 0 s chlSab2.chr25 82647338 47 + 85787240 CTATTAGACTGTAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=21534.000000 s hg38.chr1_KI270759v1_alt 313418 12 + 425601 TGTGTCTGCTGC s panTro4.chr1 225069301 12 + 228333871 TGTGTCCGCTGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226438609 12 - 229942017 TGTGTCCGCTGC i ponAbe2.chr1 I 242 C 0 s nomLeu3.chr5 140322146 12 - 143122389 TGTGTCCGCTGC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797505 12 - 227556264 TGTGTCTGCTGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847851 12 - 220367699 TGTGTCTGCTGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82647385 12 + 85787240 TGTTTCTGCTGC i chlSab2.chr25 C 0 T 83 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=1659.000000 s hg38.chr1_KI270759v1_alt 313430 2 + 425601 GT s panTro4.chr1 225069313 2 + 228333871 GT i panTro4.chr1 C 0 T 85 s ponAbe2.chr1 226438621 2 - 229942017 AT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322158 2 - 143122389 GT i nomLeu3.chr5 C 0 T 85 s macFas5.chr1 223797517 2 - 227556264 AT i macFas5.chr1 C 0 T 85 s papAnu2.chr1 16847863 2 - 220367699 AT i papAnu2.chr1 C 0 T 85 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647397 83 + 85787240 T a score=141881.000000 s hg38.chr1_KI270759v1_alt 313432 78 + 425601 GCTGTTGGTGAGCTTGTCCAAGCCCTATTAAACTATGGGTTCCTTGAGACAGACTGCCACAGTGCTGGGGCTGTGTCT s panTro4.chr1 225069230 78 + 228333871 GCTGTTTGTGAGCTAGTCCAAGCCCTATTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCC i panTro4.chr1 T 85 C 0 s ponAbe2.chr1 226438623 78 - 229942017 GCTGTTTGTGAGCGTGTCCAAGCCCTATTAGACTGTAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTACGTCC i ponAbe2.chr1 C 0 T 85 s nomLeu3.chr5 140322075 78 - 143122389 GCTGTTTGTGAGCTTGTCCAAGCCCTGTTGGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCC i nomLeu3.chr5 T 85 C 0 s macFas5.chr1 223797434 78 - 227556264 GCTGTTTGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCT i macFas5.chr1 T 85 C 0 s papAnu2.chr1 16847780 78 - 220367699 GCTGTTTGTGAGCTTGTCCAAGCCCTATTAGACTATAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTGTCT i papAnu2.chr1 T 85 C 0 s chlSab2.chr25 82647314 78 + 85787240 GCTGTTTGTGAGCTTGCCCAAGCCCTATTAGACTGTAGGTTCCTTGAGACAGAGTGCCACAGTGCTGGGGCTGTTTCT i chlSab2.chr25 T 83 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=10311.000000 s hg38.chr1_KI270759v1_alt 313510 5 + 425601 GCTGC s panTro4.chr1 225069308 5 + 228333871 GCTGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226438616 5 - 229942017 GCTGC i ponAbe2.chr1 T 85 C 0 s nomLeu3.chr5 140322153 5 - 143122389 GCTGC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223797512 5 - 227556264 GCTGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847858 5 - 220367699 GCTGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82647392 5 + 85787240 GCTGC i chlSab2.chr25 C 0 T 76 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C a score=1659.000000 s hg38.chr1_KI270759v1_alt 313515 2 + 425601 GT s panTro4.chr1 225069313 2 + 228333871 GT i panTro4.chr1 C 0 T 48 s ponAbe2.chr1 226438621 2 - 229942017 AT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322158 2 - 143122389 GT i nomLeu3.chr5 C 0 T 48 s macFas5.chr1 223797517 2 - 227556264 AT i macFas5.chr1 C 0 T 78 s papAnu2.chr1 16847863 2 - 220367699 AT i papAnu2.chr1 C 0 T 78 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647397 76 + 85787240 T a score=459.000000 s hg38.chr1_KI270759v1_alt 313517 7 + 425601 GCTGTTG s ponAbe2.chr1 226438623 7 - 229942017 GCTGTTT i ponAbe2.chr1 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e rheMac3.chr1 17033583 0 - 229590362 C e chlSab2.chr25 82647397 76 + 85787240 T e papAnu2.chr1 16847865 78 - 220367699 T e macFas5.chr1 223797519 78 - 227556264 T e nomLeu3.chr5 140322160 48 - 143122389 T e panTro4.chr1 225069315 48 + 228333871 T a score=39389.000000 s hg38.chr1_KI270759v1_alt 313524 30 + 425601 GTGAGCTTGTCCAAGCCCTATTAGACTATG s ponAbe2.chr1 226438630 30 - 229942017 GTGAGCGTGTCCAAGCCCTATTAGACTGTA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17033583 30 - 229590362 gtgagcttgtccaagccctattagactgta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223797441 30 - 227556264 GTGAGCTTGTCCAAGCCCTATTAGACTATA i macFas5.chr1 T 78 C 0 s papAnu2.chr1 16847787 30 - 220367699 GTGAGCTTGTCCAAGCCCTATTAGACTATA i papAnu2.chr1 T 78 C 0 s chlSab2.chr25 82647321 30 + 85787240 GTGAGCTTGCCCAAGCCCTATTAGACTGTA i chlSab2.chr25 T 76 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I e nomLeu3.chr5 140322160 48 - 143122389 T e panTro4.chr1 225069315 48 + 228333871 T a score=64428.000000 s hg38.chr1_KI270759v1_alt 313554 24 + 425601 GGTTCCTTGAGACAGAGTGCCACA s panTro4.chr1 225069267 24 + 228333871 GGTTCCTTGAGACAGAGTGCCACA i panTro4.chr1 T 48 C 0 s ponAbe2.chr1 226438660 24 - 229942017 GGTTCCTTGAGACAGAGTGCCACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322112 24 - 143122389 GGTTCCTTGAGACAGAGTGCCACA i nomLeu3.chr5 T 48 C 0 s rheMac3.chr1 17033613 24 - 229590362 ggttccttgagacagagTGCCACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223797471 24 - 227556264 GGTTCCTTGAGACAGAGTGCCACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847817 24 - 220367699 GGTTCCTTGAGACAGAGTGCCACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82647351 24 + 85787240 GGTTCCTTGAGACAGAGTGCCACA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14359846 25 - 49578535 I a score=1860941.000000 s hg38.chr1_KI270759v1_alt 313578 650 + 425601 GTGCTGGGGCTGTGTCCGCTGCGTCAGTGCTCAGGTCTCCTTTGTCCAAATGAAATGTGTGCTGTGGTTTTAAAAATGATTCTctgctctc-gaactcctgacctcaggtgatccacccacctcggccagcctggccaacatggtgaaaccccctctttactaaaattacaaaaattagtcaggtgtggtggcaggtgcctataatcccagctacttgggaggctgaggcaggagaattgcttgaactcaggagtcagaggttacagggttgcagtgagccgagatggcgccactgcactccagc-----ctgggcaatagagggaaact--gtttc---------aaaa--------aaaaaaaaaaaaaaagaaTCTCTGggctgggcgtggtggctcacactgtaatcccagcactttgggaggctgaggccggaggatcacttgaggtcaggagttcaagaccagcgtggccaacgtagtgaaacctcgtctctactaaaaatacaaaaattagccaggcatggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcggagcttgcagtgagctgagatcacgccactgcactccagcctgggtgacagggcaagactccatctcaaaaacaaaaaa s panTro4.chr1 225069291 643 + 228333871 GTGCTGGGGCTGTGTCCGCTGCGTCAGTGCTCAGGTCTCCTTTGTCCAAATGAAATGTGTGCTGTGGTTTTAAAAATGAATCTctgctctc-gaactcctgacctcaggtgatccacccacctcggccagcctggccaacatgatgaaaccccctctctactaaaattacaaaacttagtcaggtgtggtggcaggtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaactcaggagtcagaggttacagggttgcagtgagccgagatggcgccactgcactccagc-----ctgggcaatagagggaaactctgtttc---------aaaa--------aaaaaa---------gaaTCTCTGggctgggcgtggtggctcacactgtaatcccagcactttgggaggctgaggccggcggatcacttgaggtcaggagttcaagaccagcgtggccaacgtagtgaaacctcgtctctactaaaaatacaaaaattagccaggcatggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcggagcttgcagtgagctgagatcacgccactgcactgcagcctgggtgacagggcaagactccatctcaaaaacaaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226438684 627 - 229942017 GTGCTGGGGCTACGTCCGCTGCGTCAGTGCTCAGGTCTCCTTTGTCCAAATGGAATGTGTGCTGTGGTTTTAAAAATGAATCTctgctctc-gaactcctgacctcaggtgatccacccaccttggccagcctggccaacatggtgaaaccccctctctactaaaaatagaaaaattagccaggcatggtggcaagtgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaactcaggagtcagaggttgcagggttgcagtgagccaagatcgtgccactgcactcca---------------------AAAA------------------AAAA--------AAAAAAGAAAAGAGAGAATCTCTAggctgcgcatggtggctcacgccgtaatcccagcactttgggaggctgaggccggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaacctcgtctctactaaaaatacaaaaattagcccggcatggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcggagcttgcagtgagctgagatcacgccactgcactccagcctgggtgacagggcaagactccatctcaaaaacaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322136 647 - 143122389 GTGCTGGGGCTGTGTCCGCTGCGTCAGTGCTCAGGTCTCCTTTGTCCAAATGGAACGTGTGCTGTGGTTTTAAAAATGAATCTctgctctc-gaactcctgacctcaggtgatccacccacctcggccagcctggccaacatggtgaaaccccctctctactaaaaatacaaaaattagccaggcgtggtggcaggtgcctgtaatcccagctacttgggaggctgaggcagaagaattgcttgaactcaggagtcagaggttgcagggttgcaatgagccgagatcgtgccactgcactccagc-----ctgggcgatagagagaaactctgtttc---------aaaa--------aaaaaaaaaT-----GAATCTCTGggctgggcgtggcggctcacgtggtaatcccagcactttgggaagctgaggccggcagatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaacctcgtctctactaaaaatacaaaaattagccgggcatggtggcgggcacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagagcttgcagtgagctgagatcacgccactacactccagcctgggtgacagggcaatacttcatctcgaaaacaaaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17033637 656 - 229590362 GTGCTGGGGCTGTGTCTGCTGCATCAGTGCTCAGGTCTCCTTTGTCCAAATGGAATGCATGCTGTGGTTTCAAAAATGAATCTctggtctcggaattcctgacctcaggtgatccacccacctcggccagcctggccaacatggtgaaaccccatctctactaaaagtagaaaaattagccaggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagggttgcaatgagctgagatcacaccactgtactccagc-----ctgggcagtagagggaaactctgtttccga------aggg--------aaaaaaaaaaaaaaaGGTTCTCTGggctgggcgtggtggctcacgctctaatcccagcactttgggaggttgaggccggcagatcacttgaggtcaggagttcaagaccagcctggcgaatgtgatgaaacctcgtctccactaaaaatacaaaaattagccggccgtggtggtgggcacctgtaatcccagcgactcaggaggctgaggcaggagaatcacttgaacctgggaggcggagcttgcagtgagctaagatcatgccactgcactccagcctgggtgacagggcaagactccatctcaaaaatgaaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223797495 657 - 227556264 GTGCTGGGGCTGTGTCTGCTGCATCAGTGCTCAGGTCTCCTTTGTCCAAATGGAATGCATGCTGTGGTTTCAAAAATGAATCTctggtctcggaactcctgacctcaggtgatccgcccacctcggccagcctggccaacatggtgaaaccccatctctactaaaagtagaaaaattagccaggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagggttgcaatgagctgagatcacaccactgtactccagc-----ctgggcagtagagggaaactctgtttccga------aggg-------aaaaaaaaaaaaaaaaGGATCTCTGggctgggcgtggtggctcacgctctaatcccagcactttgggaggttgaggccggcagatcacttgaggtcaggagttcaagaccagcctggccaacgtgatgaaacctcgtctccactaaaaatacaaaaattagccggccgtggtggtgggcacctgtaatcccagcgactcaggaggctgaggcaggagaatcacttgaacctgggaggcggagcttgcagtgagctaagatcatgccactgcactccagcctgggtgacagggcaagactccatctcaaaaacgaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16847841 658 - 220367699 GTGCTGGGGCTGTGTCTGCTGCATCAGTGCTCAGGTCTCCTTTGTCCAAATGGAATGCATGCTGTGGTTTCAAAAATGAATCTCTGGtctcggaactcctgacctcaggtgatccacccacctcggccagcctggccaacatggtgaaaccccatctctactaaaagtagaaaaattagccaggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagggttgcaatgagctgagatcacaccactgtactccagc-----ctgggcaatagagggaaactctgtttccga------aggg------gaaaaaaaaaaaaaaaaggatctctgggctgggcgtggtggctcacgctctaatcccagcactttgggaggttgaggccggcagatcacttgaggtcaggagttcaagaccagcctggccaatgtgatgaaacctcgtctccactaaaaatacaaaaattagccggccgtggtggtgggcacctgtaatcccagcgactcaggaggctgaggcaggagaatcacttgaacctgggaggcggagcttgcagtgagctaagatcatgccactgcactccagcctgggtgacagggcaagactccatctcaaaaacgaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82647375 663 + 85787240 GTGCTGGGGCTGTTTCTGCTGCATCAGTGCTCAggtctcctttgtccaaatggaatgcatgctgtgatttcaaaaatgaatctctggtctc-gaactcctgacctcaggtgatccacccacctcggccagcctggccaacatggtgaaaccccatctctactaaaagtagaaaaattagccaggcatggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagggttgcagtgagctgagatcacaccactgtactccagc-----ctgggcaatagaaggaaactctgtttccga------aaaaacaaaaacaaaaacaaaaaaaaTGGATCTCTGggctggacgtggtggctcacgctctaatcccagcactttgggaggctgaggccggcagatcacttgaggtcaggagttcaagaccagcctggccaatgtggtgagacctcgtctccactaaaaatacaaaaattagctggccgtggtggcaggcacctgtaatcccagtgactcaggaggctgaggcaggagaatcacttgcacctgggaggcggagcttgcagtgagctaagatcatgccactgcactgcagcctgggtgacagggcaagactccatctcaaaaacaaaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14359871 641 - 49578535 GTGCTGGTGCTCTGTCCGCTGCGTCAGCACTCAGGCCTCCTTTGTCCAAATGGAATGTGTGCTGTGGTTT-AAAAATGAAACTctggtctc-aaactcctgacttcaggtgatctacctacctcagccagcctggccaacatggtgaaaccctgtctttactaaaaatacaaaaattagccaggcatggtggcaggcacctgtaatcctaacaacttgggaggctaaggcaggagaactgcttgaacgcaggaggcagaggttgcag--------tgagacgagatcacgccactgcactcctgcccactctgggtaacagagtaaaactctgtttTCTGTTTTTTAAAA--------AA-------------GAATATCTggcctgggtgtagtggctcatgccataatcccagcactttgggaggctgaggtgggtggatcacttgaggtctggagttcaagaccagcctggccaacatggtgaaacctcatctctactaaaaatacaaaaattagccgggtgtagtggtaggcatctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcaatgagcccagatcacaccactgcactccagcctgggcaacagagcaagactc---cttaaaaaaaaaaaa i calJac3.chr19 I 25 I 384 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I a score=33145.000000 s hg38.chr1_KI270759v1_alt 314228 19 + 425601 tgaaaaataaaataaaaaT s panTro4.chr1 225069934 14 + 228333871 tgaaaaataaaa-----aT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226439311 19 - 229942017 tgaaaaataaaataaaaaT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322783 14 - 143122389 tgaaaaataaaa-----aT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17034293 19 - 229590362 taaaaaataaaataaaaaT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223798152 19 - 227556264 taaaaaataaaataaaaaT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16848499 19 - 220367699 taaagaataaaataaaaat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82648038 19 + 85787240 taaaaaataaaataaaaaT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I e calJac3.chr19 14360512 384 - 49578535 I a score=200401.000000 s hg38.chr1_KI270759v1_alt 314247 106 + 425601 TAATCTCTG-TGTTATCTAGTAGAGCTGTGATTCGGGAAGAGTAAGACCACCCAATTACCTTTCACGTAAGCAGATGGTATTAGGTCAGAGAAGC-CTCACAACGCAA s panTro4.chr1 225069948 106 + 228333871 TAATCTCTG-TGTTATCTAGTAGAGCTGTGATTCAGGAAGAGTAAGACCACCCAATTACCTTTCACGTAAGCAGATGGTATTAGGTCAGAGAAGC-CTCATAACGCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226439330 106 - 229942017 TAATCTCTG-TGTTATCTAGTAGAGCTGTGATTCGGAAAGAGTAAGACCACCCAACTACCTTTCACGTAAGCAGATGGTATTAGGTCAGagaagc-ctcataacgcaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322797 106 - 143122389 TAATCTCTG-TGTTATCTAGTGGAGCTGTGATTCGGAAACAGTAAGACCACCCAATTACCTTTCACATAAGCAGATGTTATGAGGTCAGAGAAGC-CTCATAACGCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17034312 85 - 229590362 GAATCT-------------------CTGTGGTTCAG---GAGTGAGACCACCCAACTGTCTTTCACGTCAGCGGATGGTATCAGGTCAGagaagc-ctcataatgcaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223798171 85 - 227556264 GAATCT-------------------CTGTGGTTCAG---GAGTGAGACCACCCAACTGTCTTTCACGTCAGCGGATGGTATCAGGTCAGagaagc-ctcataatgcaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16848518 85 - 220367699 gaatct-------------------ctGTGGTTCAG---GAGTGAGACCACCCAACTGTCTTTCACGTCAGCGGATGGTATCAGGTCAGAGAAGC-CTCATAATGCAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82648057 85 + 85787240 GAATCT-------------------CTGTGGTTGAG---GAGTGAGACCACCCAACTACCTTTCACGCCAGCGGATGGTATCCGGTCAGAGAAGC-CTCATAGTGCAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14360896 106 - 49578535 taatcccagctaTCATCTAGTACAGCTGTGATTCACGAAGAGCAAGACCAGCCAGTTACCTCCGAT-TAAGTCGGTGGTGTTAGGTCAGagaagctctcata-tgcaa i calJac3.chr19 I 384 C 0 e mm10.chr1 178877579 2297 + 195471971 I e canFam3.chr7 36457759 362 + 80974532 I a score=655760.000000 s hg38.chr1_KI270759v1_alt 314353 232 + 425601 CAGAGTCAGGAGGCAGTCAGCTGACTGGGCaagtatgttagagggggaattatagaaaatgatgtat-----tcataaaggtgttatctgaaattaaataatacaaatgtattttta--------ttcattgatcttacgaaccacaaagggccaaggctctctctt-----tgagttttcaattcaattaatttgacttccacgaaccacattcgtattaacagttcagtttttgctttgaatttcttc s panTro4.chr1 225070054 226 + 228333871 CAGAGTCAGGAGGCAGTCAGCTGACTGGGCAAGTATGTTAg----ggaattatagaaaatgatgtat-----tcataaaggtgttatctgaaattaaataatacaaatgtattttta--------ttcattgatcttacgaaccacaaagggccaaggctctctctt-----tgagttttcaattcaa--aatttgacttccatgaaccacatttgtattaacagttcagtttttgctttgaatttcttc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226439436 235 - 229942017 cacagtcaggaggcggtcagctgactgggcaagtatgttagagggggaattatagaaaatgatatattcatgtcataaatatattatctgaacttaaataatacaaatgtattttta--------ttcattgatcttacaaaccacaaagggccaagactctatctt-----tgagttttcaattcaa--aatttgacttccatgaaccacattcatattaacagttcagttttcgctttaaatttcttc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140322903 231 - 143122389 CA----CAGGAGGCGGCCAGCTGACTGGGCAAGCGTgttagagggggaattatagaaaatgatagattcatgtcataaagatgttatctgaacttaaataatacaaatgtattttta--------ttcattgatcttacgaaccacaaagggccaaggctctatctt-----tgagttttcaattcaa--aatttgacttccacgaaccacattcatattaacagttcagtttttgctttaaatttcttc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17034397 235 - 229590362 cacagtcaggaggtggtcagctccctgggtaagtgggttagcgggggacttacagaaaatgatatattcatgtcataaggatgttatctgaacttaaataatacaaatgtatttttg--------ttcattgatcttacgaaccataaagggccaaggctctctcat-----tgagtCTTCAATTCAA--AAGTTGACTTCCACAAACTACGTTCATGTTAACAGTTCAGTTTTTACTTTACATTTCTtc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223798256 235 - 227556264 cacagtcaggaggtggtcagctccctgggtaagtgggttagcgggggacttacagaaaatgatatattcatgtcataaggatgttatctgaacttaaataatacaaatgtatttttg--------ttcattgatcttacgaaccataaagggccaaggctctctcat-----tgagtCTTCAATTCAA--AAGTTGACTTCCACAAACTACGTTCATGTTAACAGTTCAGTTTTTACTTTACATTTCTtc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16848603 235 - 220367699 CACAGTCAGGAGGCGGTCAGCTCCCTGGGTAAGTGGGTTAGCGGGGGACTTACAGAAAATGATATATTCATGTCATAAGGATGTTATCTGAacttaaataatacaaatgtatttttg--------ttcATTGATCTTACGAACCATAAAGGGCCAAGGCTCTCTCAT-----TGAGTCTTCAATTCAA--AAGTTGACTTCCACAAACTATGTTCATGTTAACAGTTCAGTTTTTGCTTTACATTTCTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82648142 235 + 85787240 CACAGTCAGGAGGCGGTCCGCTCCCTGGGCaagtgggttagcgggggacttacagaaaatgatatattcatgtcataaggatgttatctgaacttcaataatacaaatgtacttttg--------ttcattgatcttacgaaccataaagggccaaggcgctctcat-----tgagtTTTCAATTCAA--AAGTTGACTTCCACAAACCACGTTCATGTTAACAGTTCAGTTTTTGCTTTACATTTCTtc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14361002 239 - 49578535 cacagcctggaggaggtcagttcgctgggaaagctggtgaaagggggaattgtggaaaatgatatgttcatgtcataaagatg---tctaaacttaaataatacaaatgtatttttgttcatcgattcattgatcttgtgagccataaagggcc-agtctttctctt-----tgagttttcaattcaa--agttcggtttccagggaccacattcatattaacagttcagtttttgccttaaatttcttc i calJac3.chr19 C 0 I 330 s canFam3.chr7 36458121 183 + 80974532 cagagttaggagtctctca----------------tgtaaaaggaggaatcttgtaggatgatacattcatgccatgaacattttatctcaacttaaaagatagaaataggtattta--------ttcattgatcttctgat-----atggaccatggctttctctttgagatgagttttcaacttaa--agttctgcTTTTACGAATCAc-------tta----------------------------- i canFam3.chr7 I 362 C 0 e mm10.chr1 178877579 2297 + 195471971 I a score=1105135.000000 s hg38.chr1_KI270759v1_alt 314585 441 + 425601 aaagagatttaagagcttaaaaaaacactt-tacaaccaact--------gggtatagactttttctagattcttacagtattttccactctataattcctcattcacacaaaattcaacatcgttaaaaaaaa--------------tt----tttttttttgagacagggtctcactctgtcacccaggctgaagtgcagtggcgctatcttggctcactgcaacctctgcctcccaggctcaagtgatcctcccacttcagcctcccacgtagctggggcaacaggtgcgcaccaccatgcctggctaatagtttatattttttt---------gtagagat-------ggggtttcaccattttgcccaggctgctctcaaactcctgagctcaggcgatccacctgccttggcctcccaaagtgctgggattacaggtgtgagccatggtacccgtcc--aaaaaatcctcatttttt-------atc s panTro4.chr1 225070280 441 + 228333871 aaagagatttaagagcttaaaaaaacactt-tacaaccaact--------gggtatagactttttctagattcttacagtattttccactctataattcctcattcacacaaaattcaacaaggttaaaaaaaa--------------tt----tttgtttttgagacagggtctcactctgtcacccaggctgacgtgcagtggcgctatcttggctcactgcaacctctgcctcccaggctcaagtgatcctcccacttcagcctcccacgtaactggggcaacaggtgcgcacgaccatgcctggctaatagtttatattttttt---------gtagagat-------ggggtttcaccattttgcccaggctgctctcaaactcctgagctcaggcaatccacctgccttggcctcccaaagtgctgggattacaggtgtgagccatggtacccgccc--aaaaaatcctcatttttt-------atc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226439671 460 - 229942017 aaagagatttaagagctt-aaaaaacactt-tacaaccaact--------gggtatagactttttctaggttcttacaatattttccactctgtaattcctcattcacaccaaattcaacatctttataaaaactttttttttttttttt----tttttttttgagacagggtctcactctgtcacccaggctgaagtgcagtggtgctatcttggctcactgcaacctctgcctcccaggctcaagtgatcctcccacttcagcctcccacatagctgaggctacaggtgtgcaccaccatgcctggctaatagtttatactttttt---------gtagagat-------ggggtttcacca-tttgcccaggctgctctcaaactcctgagctcaggtgatccacctgccttggcctcccagggtactgggattacaggtgtgagctatggcacccatcc--aaaaaatcctcattttttttttttaatc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140323134 441 - 143122389 aaagagatttaagagctt-aaaaaacactt-tacagccaact--------gggtctagacttttt-tagattcgtacaatattttccactctataattcctcattcacaccaaattcaacatctttataaaaac------tttttttttt----tttttttttgagacaggat----ctctgtcacccaggctgaagtgcagtggcgctatcttggctcactgcaacctc-gcctcccaggctcaagtgatcctcccacttcagcctcccacgtagctggggctacagatgtgcaccaccatgcctggctaatagtttatattttttt---------gtagagat-------ggggtttcaccattttgcccaggctgctctcaaactcctgagctca-gcgatccacctgccttggcctcccaaagtgctgggattacaggtgtgagccatggcacctgtcc---aaaaatcctcattttta------aatc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17034632 430 - 229590362 --------------------aaaaacactt-tacaacgaact--------gggtatagactttttctagattcttacaacattttccactctataattcctcattcacaccaaattcaacatctttaaaaacac----------tttttt------ttttttggagacagggtctcactctgtcacccaggctggagtgcagtggtgctatcttggctcactgcaacctctgcctcccaggctcaagtgatcctcccacttcagcctcccacgtagctggggctacgggtgtgcaccaccatgcctggctaatagtttatattttttt---------gtagagac-------agggtttcaccatttttcccagactgctctcaaactcctgagctcaggcgatccacctgtcttggcctcccaaagtgctgagattacagatgtgagccatggcacccgtcc--agaaaatcctcattttttttttttaatc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223798491 431 - 227556264 --------------------aaaaacactt-tacaacgaact--------gggtatagactttttctagattcttacaacattttccactttataattcctcattcacaccaaattcaacatctttaaaaacac----------tttttt----tcttttttggagacagggtctcactctgtcacccaggctggagtgcagtggtgctatcttggctcactgcaatttctgcctcccaggctcaagtgatcctcccacttcagcctcccacgtagctggggctacgggtgtgcaccaccatgcctggctaatagtttatattttttt---------gtagagac-------agggtttcaccatttttcccagactgctctcaaactcctgagctcaggcgatccacctgtcttggcctcccaaagtgctgagattacagatgtgagccatggcacccgtcc--agaaaatcctca-tttttttttttaatc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16848838 436 - 220367699 --------------------AAAAACACTT-TACAACGAACT--------GGGTATAGACTTTTTCTAGATTCTTACAACATTTTCCACTCTATCATTCCTCATTCACACCAAATTCAACatctttaaaaacac----------tttttttttttttttttttgagacagggtctcactctgtcacccaggctggagtgcagtggtgctatcttggctcactgcaatttctgcctcccaggctcaagtgatcctcccacttcagcctcccacgtagctggggctacgggtgtgcaccaccatgcctggctaatagtttatattttttt---------gtagagac-------ggggtttcaccatttttcccagactgctctcaaactcctgagctcaggcgatccacctgccttggcctcccaaagtgctgagattacagatgtgagccatggcacccgtcC--AGaaaatcctcattttttttttttaatc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82648377 432 + 85787240 --------------------aaaaacactt-tataaccaact--------gggcatagactttttctagattcttacaacattttccactctgtaattcctcattcacaccaaattcaacatctttaaaaacac----------tttttt----tttttttttgagacagggtcttactctgtcacccaggctggagtgcagtggtgctatcttggctcactgcgagctccacctcccaggctcaagtgatcctcccacttcagcctcccacatagctggggctacgggtgtgcaccaccatgcctggctaatagtttatattgtttt---------gtagagac-------agggtttcaccatttttcccagactgctctccaactcccgagctcagacgatccacctgccttggcctcccaaagtgctgagattacaggtgtgagccatggcacccgtcc--agaaaatcctcattttttttttttaatc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14361571 437 - 49578535 ----aaagaaaaggggcttaaaaaacacttatgcaaccagttggatataggggtataaactttttc--gattcttacagtgttttccactctgtaattcctcattcacaccaaattcaatatcttaaaatttattttatttatttattta----tttatttttgagacagggtcccactctgtcacccaggctggaatgtagtggtgcgatctcggctcactgcaacctctg-cttccgggtttaagtgattctcctgtctcagcctcccgagtagctgagactacaggcgcccaccaccacacc-agccaatttttttttttttttttaatttttagcagagat-------ggggtttcaccatgttggccaggatgttctcaatctc---agacctcgtgatccaccggcttcggcctcccaaagtgctgggattacaggtgtgagccaccacgccc---------------------------------- i calJac3.chr19 I 330 C 0 s canFam3.chr7 36458304 339 + 80974532 gaagtgattcaagaactc-aaaagacattgatgcagccagct---------ggtgtaacacctttctagattcttaaatgtttttccactctataatttttcattttcacctaacttggcatc----------c----------cttttt----atttttttaaagat--------------ttgtctatttaagagagcatgagcg-------------------------------agggtggggtggat------------------gggcagagggagagggagaagcagactgcc-cgctgagcagggagccta-------at---------gtggggctcaaccccaggactccaagatcatgaccagag-------------ctgaaggcagatgcttca-ctgactgagcccccca-ggcgc------------------cctcagcatctcttttttaaaaataactaatttta-------atc i canFam3.chr7 C 0 C 0 e mm10.chr1 178877579 2297 + 195471971 I a score=2566749.000000 s hg38.chr1_KI270759v1_alt 315026 817 + 425601 acatcttttcaaagcattgagttgagtttttat-aaaaacattaactctctttacaaaat--c--atttcattggcttatacagtatt---ttatgtttttatttaaaataacaaggggcagaaaccaatttaggaggaaacacag-ctgacctattaagaactatgcagctgattctttttggagcaa-aagtgc----acaaactagaccacagcctccactaaccacg-agccctcagcgtgctgtgggcgtcaggcag--aacttcttatgcaggtgacccagagcattgctgaacct-ggccaggtggtAAGGcagtggctcccaaacttagctacacattagactcacctggagggcttttaaacgcatcccagagtgcgtgctgccctccagcccaattaaattagaaaggctgggagtgggaaccagacgtcaatatttcttgaaagattccagggtgattccaacgggcagcaaagtttgggaGGAACTACGACGGTGC-GGGAAGGCGagttaaaagag---------cttctgca--tgctttctg-gttagcttcggattttcatcttagatttagcattaattttctatgagatcttgggtgatttatttaacttc--tat------------gagcctcagttt----ccttatatgtaaaatggggct-aatttctgc---attgtgggat-attataggaattaagtgatattaggagaatttaggatttcctgctaccttccaggtgcttaataa------------agtgtggctcAGGCGTAGGA-GACGTTATTAT------------------------------------------ATTGTTTCCTGT-GGGTAGAATAAGGCATGTGGGTAATTTGGTTTGGTCAAAGTCTAGACTTAAAATAT s panTro4.chr1 225070721 817 + 228333871 acatcttttcaaagcattgagttgagtttttat-aaaaacattaactctctttacaaaat--c--atttcattggcttatacagtatt---ttatgtttttatttaaaataacaagtggcagaaaccgatttaggaggaaacacag-ctgacctattaagaactatgcagctgattctttttggagcaa-aagtgc----acaaactagaccacagcctccactaaccacg-agccctcagcgtgctgtgggcgtcaggcag--aacttcttatgcaggtgacccagagcattgctgaacct-ggccaggtggtAAGGcagtggctcccaaacttagctacacattagactcacctggagggcttttaaaagcatcccagagtgcgtgctgccctccagcccaattaaattagaaaggctgggagtgggaaccagacgtcaatatttcttgaaagattccagggtgattccaatgggcagcaaagtttgggaGGAACTACGACGGTGC-GGGAAGGCGagttgaaagag---------cttctgca--tgctttctg-gttagcttcggattttcatcttagatttagcattaattttctatgagatcttgggtgatttatttaacttc--tat------------gagcctcagttt----ccttatatgtaaaatggggct-aatttcttc---attgtgggat-attataggaattaagtgatattaggagaatttaggatttcctgctaccttccaggtgcttaataa------------agtgtggctcAGGCGTAGGA-GACGTTATTAT------------------------------------------ATTGTTTCCTGT-GGGTAGAATAAGGCATGTGGGTAATTTGGTTTGGTCAAAGTCTAGACTTAAAATAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226440131 812 - 229942017 acatcttttcaaagcattgagttgagtttttatgaaaaacattaactgtctttacaaaat--c--atttcattggcttatacggtatt---ttatgtttttatttaaaataccaagtggcagaaaccaatttaggaggaaaaacag-ctgacctattaagaactatgcagctgattctttttggagcaa-aagtgt----acaaactagaccacagcctccactaaccacg-agccctcagcgtgctgtgggcgtcaggcag--cacttcttatgcaggtgacccagagcattgcttaacct-ggccaggtggtaaggcagtggctcccaaacttagctgcacattagactcacctggagggcttttaaaagcatcccagtgtgcgtgctgccttccagcct-----aattagaaaggctgggagtgggaaccagacatcaatacttcttgaaagattccagggtgattccaatgtgc-gcaaggtttgggaggaactactacggtgc-aggaaggtgagttaaaagag---------cttctgcA--TGCTTTCTG-GTTAGCTTCggattttcatcttagatttcgcattaattttctatgagatcttgggtgatttatttaacttc--tat------------gagcctcagttt----ccttatatgtaaaatggggct-aatttctgc---attgtgggat-attataggaattaagtgatataaggagaatttaggatttcctgctaccttccaggtgcttaataa------------agtgtggctcAGGCGTAGGA-GACGTTATTAT------------------------------------------ATTGTTTCCTGT-GGGTAGAATAAGGCATGTGGGTAATTTGGTTTGGTCAAAGTCTAGACTTAAAATAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140323575 815 - 143122389 acatcttttcaaagcattgagttgagtttctat-aaaacaattaactcccttgacaaaat--g--atttcattggcttatatagtattttattatgtttttatttaaaataacaagtggcagaaaccgatttaggaggaaacacag-ctgacctattaagaactatgcagctgattctttttggagcaa-aagtgc----acaaactagaccacagcctccactaaccacg-agccctcagcgtgctgt--gcgtcaggcag--cacttcttatgcaggtgacccagagcattgctgaacct-ggccaggtggtaaggcagtggctgtcaaacttagcggcacactagactcacctggagggctttcaaaagcatcccagtgtgcgtgctgccctccagcccaattaaatgagaaagcctgggagtgggaaccagacgtcaatatgtcttgaaagtttcccaggtgattccaatgtgcagcaaagtttgggaggaactactgcggtgc-gggaaggtgagttaaaagag------------ctGCA--TGCTTTCTG-CTTAGCTTCggattttcatcttagatttcgcattaattttctatgagatcttgggtgatttatttaacatc--tat------------gagcctcagttt----ccttacatgtaaaatggggct-aatttctgc---attgtgggat-attataggaattaagtgatattaggagaatttaggatttcctgctaccttccaggtgcttaataa------------agtgtggctcAGGCATAGCA-GACATTATTAT------------------------------------------ATTGTTTCCTGT-GGGTAGAATAAGGCATGTGGGTAATTTGGTTTGGTCAAAATCTAGACTTAAAATAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17035062 798 - 229590362 acatcttttcaaagcattgagttgagtttttat-aaaaacatgaactctctttacaaaat--c--atttcattggcttatatcgtattttattatgtttttatttaaaataacaagtggcagaaaccggtttaggaggaaacacag-ctgacctattaagaactatgcagctgattctttttagagcaa-aagtgctcagacagactagaccacagcctccactatccacg-agccctccgcgtgctgtgggcgtcaggcag--ca---ctgatgcaggtgacccagggcattgcttaacct-ggccaggtggtATGGcagtggctcccaaacttagctgcacattagagtcacctggagggc--------------------gcatgctgccctccagcccaattaaattagaaagcctgggagtgggagccaggcgccagtatctctcggaagatttcagggtgagtccattgtgcagcaaagtttgggaggaactactACGGTGC-GGGAAGGTGAGTTAAAAGAA---------CTTCTGCA--TGCTTTCTG-ggtagcttcggattttcatcttagatttagcattaattttctatgagatcttgggtggtttatttaacatc--tat------------gagcctcagttt----ccttatatgtaaaatggggctaaatttctgc---attgtgggat-attataggaattaagtgatatTAGGAG-ATTTAGGATTTCCTGCTACCTTCCAGGTGCTTAATAA------------AGTGTGACTCAGGCGTAGGA-GAC---ATTAT------------------------------------------ATTATTTCCTGT-GGGTAGAGTAAGGCATGTGAGTAATTTGGTTTGGTCAAAGTCTAGACTTAAAATAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223798922 798 - 227556264 acatcttttcaaagcattgagttgagtttttat-aaaaacatgaactctctttacaaaat--c--atttcattggcttatatcgtattttattatgtttttatttaaaataacaagtggcagaaaccggtttaggaggaaacacag-ctgacctattaagaactatgcagctgattctttttagagcaa-aagcgctcagacagactagaccacagcctccactatccacg-agccctccacgtgctgtgggcgtcaggcag--ca---ctgatgcaggtgacccagggcattgcttaacct-ggccaggtggtACGGcagtggctcccaaacttagctgcacattagagtcacctggagggc--------------------gcatgctgccctccagcccaattaaattagaaagcctgggagtgggagccaggcgccagtatctctcggaagatttcagggtgagtccattgtgcagcaaagtttgggaggaactactACGGTGT-GGGAAGGTGAGTTAAAAGAA---------CTTCTGCA--TGCTTTCTG-ggtagcttcggattttcatcttagatttagcattaattttctatgagatcttgggtggtttatttaacatc--tat------------gagcctcagttt----ccttatatgtaaaatggggctaaatttctgc---attgtgggat-attataggaattaagtgatatTAGGAG-ATTTAGGATTTCCTGCTACCTTCCAGGTGCTTAATAA------------AGTGTGACTCAGGCGTAGGA-GAC---ATTAT------------------------------------------ATTATTTCCTGT-GGGTAGAGTAAGGCATGTGGGTAATTTGGTTTGGTCAAAGTCTAGACTTAAAATAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16849274 798 - 220367699 acatcttTTCAAAGCATTGAGTTGAGTTTTTAT-AAAAACATGAACTCTCTTTACAAAAT--C--ATTTCATTGGCTTATATcgtattttattatgtttttatttaaaataacaagtgGCAGAAACCGGTTTAGGAGGAAACAAAG-CTGACCTATTAAGAACTATGCAGCTGATTCTTTTTAGAGCAA-AAGCGCTCAGACAAACTAGACCACAGCCTCCACTACCCACG-AGCCCTCAGCGTGCTGTGGGCGTCAGGCAG--CA---GTGATGCAGGTGACCCAGAGCATTGCTTAACCT-GGCCAGGTGGTACGGCAGTGGCTCCCAAACTTAGCTGCACATTAGAGTCACCTGGAGGGC--------------------GCATGCTGCCCTCCAGCCCAATTAAATTAGAACGCCTGGGAGTGGGAGCCAGGCGCCAGTATCTCTCGGAAGATTTCAGGGTGAGTCCATTGTGCAGCAAAGTTTGGGAGGAACTACTACGGTGC-GGGAAGGTGAGTTAAAAGAA---------CTTCTGCA--TGCTTTCTG-GGTAGCTTCGGATTTTCATCTTAGATTTAGCATTAATTTTCTATGAGATCTTGGGTGGTTTATTTAACatc--tat------------gagcctcagttt----ccttatatgtaaaatggggctaaATTTCTGC---ATTGTGGGAT-ATTATAGGAATTAAGTGATATTAGGAG-ATTTAGGATTTCCTGCTACCTTCCAGGTGCTTAATAA------------AGTGTGACTCAGGCGTAGGA-GAC---ATTAT------------------------------------------ATTATTTCCTGT-GGGTAGAGTAAGGCATGTGGGTAATTTGGTTTGGTCAAAGTCTAGACTTAAAATAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82648809 799 + 85787240 acatcttttcaaagcattgagttgagtttttat-aaaaacatgaactctctttacaaaat--c--atttcattggcttatatcgtattttattatgtttttatttaaaataacaagtggcagaaaccggtttaggaggaaacacag-ctgacctattaagaactatgcagctgattctttttagagcaa-aagcgctcagacagactagaccacagcctccatgacccacg-agccctcagcgtgctctgggcatcaggcag--ca---ctgatgcaggtgacccagggcattgcttaacct-ggccaggtggtACGGcagtggctccccaacttagctgcacattagagtcacctggaggac--------------------gcatgctgccctccagcccaattaaattagaaagcctgggagtgggagccaggcgccagtatctcttggaagatttcagggtgagtccattgtgcagcaaagtttgggaggaactactACGGTGC-GGGAAGGTGAGTTAAAAGAA---------CTTCTGCA--TGCTTTCTG-GTTAGCTTCggattttcatcttagatttagcattagttttctatgagatcttgggtgatttatttaacatc--tat------------gagcctcagttt----ccttatatgtaaaatggggctaaatttctgc---attgtgggat-attacaggaattaagtgatattaggagaatttaggacttcctgctaccttccaggcgcttaataa------------agtgtggctcAGGCGTAGGA-GAC---ATTAT------------------------------------------ATTATTTCCCGT-GGGTAGAATAAGGCATGTGGGTAATTTGGTTTGGTCAAAGTCTAGACTTAAAATAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14362008 769 - 49578535 -------------------agctgagtttttat-agaaacattaact--ctgtacaaaat--a--atttcattgccttaaatagtattttattatgcctttatttataataacaagtggtagaaacctattt-gggggaaacacagtttgacctattaagaactatgcagctgattctttttgtaacaa-aagtgc----gcaaactagaccacagcctccactaaccacg-agccctcactgtgct------------tag--cacgactcacgcaggtgacccagagcattgcttcacct-ggccacgtgggaaggcagtggct-ccacacttagccgcacattagactcacctggagggcttttaaaggcatcccgcac-gcatgcttgcctccagagcaatttaatcag-----cgtggagtgggagccagccaccaatacttctttaaagattccaaagtgcttctaacgggcagcaaagttcgggaggaaccactagagtaa-gggaaggtgagtt--aagag---------cttctgcA--TGCTTTCTG-ggtagcttcggattttcatcttagatttagcattgattttctatgagattttgggcgatttctttaacatc--tac------------gagcctcagttt----ccttccctataaaatggggCT-TATTTCTGC---ATTCTGGGAT-ATTGT--------AGTGATATTGGAAGAATTTAGGATTCCCTGGTACCTTCCAGGTGCTTGATAA------------AGTGTGGCTCAGGAGTAGAA-AAA-TTATTAC------------------------------------------ATTGTTTCCTGT-GGGTAGAATAAGATATGTGGGTAATTTGGTTTGGTCCAAGTCTAGACTTAAAATAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178879876 766 + 195471971 ACATCTTCCCAAAACATTAAGCTTAATTTATAT-ATAAATGTTGAAACTCCATGTAAAATGGT--GTTTTATTGGTTTTTGTGTTGT----TTGTATTTTAGTT--GCATAATAAATG-----AACGTGTc-------gaaaactg-ctgatctcctggtagatagacagc-gcatcattttggaacca-aagtgcttaaacaaa-------gcagcct----------ca-agcacttggcaagctgt-ggtgccagtcagtccatgtcttacagaggcaacggagagtgtgactaatctTCAGCTGGGTGGGAAGACACTGGATcctagact--gcagcccgtgatagttgtct-gagaactttgaagtgaatcctagtgcccgttctgtactccagcccaagcaaatgagaaggcctgggagtggggggcagacagcagaagttctttgcaggtccca-ggtgattccagagtgctgccatatt----ggaagtcacATTTGTGC----AAGACACGTAGAAGG------------CTATGCG--TGTCTCAAGAGTTCACATTGGGTTCCCACCT--GACTCAGCATTAATTTTCAATAACGTCATGGGTGATTCTTTT----TCAGCAT------------GGACCTCAGCCC----TCCGATCTAT------------CATTTCAGCCCAATTAATGTAT-AATGTAGGCATTAGGTGATATTAGAAGAATTTAGTATTCCCCAGGACCTAGCAGGTACTCAATAT------------AGTGTGGTTTAGAAATAGGT-AAGATTAGTGC------------------------------------------ATTG-CTCCCGT-GGGGAAAATAAAATGTGTGGGTAATTTGGTTTGGTCTATCTCTGGACTCAAAATAT i mm10.chr1 I 2297 I 198 s canFam3.chr7 36458643 858 + 80974532 tcatcttttcaaagcattgagtttagtttttaa-agaaacatgagctctctttatacaat--catattttattggttcatataagatttgcttctatttgtatctgtaatgacaagtggcat-aattggctttggagggaacccaa-ctgatctgttaagcacc---cagc----tcatttgaaggtagcaagagC----ACAGAGGAGAAGACAGTCAGGGCTGCCCATGCAGGTCTCA-TGTGCAGAGGGCATCGGTTCA--CATGACTCA--CAGGTGA-------------------T-GGCCAGGTGGCAGGGCAACCCTACCTAGATtttgctgtataggagaatcaccggggggagctttgcagggaatctcaggtccatggcgcactccaggccagttaaattagaaagccttggtgtgggagccagacatcgtgttttctt---agattctcagatgattctgatcggccgcaaagtttg------ccaaccaAAGTCCCGGAAAGGTGAGTTAAAAGAGGTTCAGCCTCTTTTACAGTTGCTTTACA-GTTAACTCTGGATTTTCATCTTAGATTCAGCATTAGTTTTCTAAGTGATGTTGGGCaatttattt--tttt--tatttatttGGTGGGGGAGGTGATTTTTTAACCTCATCGGCCAAACGGAGTC-GATTCTTGC---CTTATAGGATCATTGTAGGAATTAAGTGATATCAGGAG-----ACGAG--CCTGGCACCTATCGGGTCCTTGGTCAACGTGGGTTAGGAGGGTCACTCTGGAATGGGGTGAA---ATTGTGCTTGCTTCGGCAGCATATATATGGAATGGGGTGAAATTAGGATTGCTTCCCATGGGGGAGAGTAGGGCATGTGGGTGTTCCGTTTTGCCCAAGCTCCAGACTTGCCACAT i canFam3.chr7 C 0 C 0 a score=62353.000000 s hg38.chr1_KI270759v1_alt 315843 19 + 425601 TGCATATTAGAATATAACT s panTro4.chr1 225071538 19 + 228333871 TGTGTATTAGAATATAACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226440943 19 - 229942017 TGCATATTAGAATATAACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140324390 19 - 143122389 TGCATATTAGAATATAACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17035860 19 - 229590362 TGCATATTAGAATATAACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223799720 19 - 227556264 TGCATATTAGAATATAACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16850072 19 - 220367699 TGCATATTAGAATATAACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82649608 19 + 85787240 TGCATATTAGAATATAACT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14362777 19 - 49578535 TGCACATTAGAATATAACT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36459501 18 + 80974532 -CCACAGGAGAGAATGAAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178880642 198 + 195471971 I a score=2741731.000000 s hg38.chr1_KI270759v1_alt 315862 721 + 425601 AAAGGATTACTCAAGGCAGACTGAGTTGTGTTCCTTTAAC-CCTGCAGTCTTGACCTCA-AAATCTGGAAAGTCAGTGAGGAACCTGCTTCTTACCTGCTATTAATTATCACCTATTGTGTTCATTTGCTGTGTAACTACACTTTCTCCCCAGCCGCCGGAAGTGATGGAAATTCTTGATAATAGCAAGTGGCCTGTGCTGACTCACCTTGTACTATTTCAAGTTAAGCACCATGTGTGAAATTCACAATTCTGTGCCTACGGCAACTCCAATAGGCACGGAGCAGAGAGTAG-ATTTTCCATTGTCTAAATGTGACTCTTACTTTGAGTCACGCAGGTATAATTATAGGTATTTTATATTATCA-TCCTCAGCACAGTCTAAACTGTGCCTTTTGTTCT----T-GTGTTCTGTTTTACTA----CATGTACATTATCCATTTTATTCCATTACATCAAATGGACTGTTA-------GAGTCAG--------AATTGGTCTCTGTCTTTGCCCTTTAATCTGTGGTGCATGTGGAATATCTGAGCTTCTCCTGTCTATATAATTAGGCTGCAAAACAGATGATATTTTGCTTTAAAAATAACTATTTCCATAGCACGCTGCTGTGACCCAAGCTTGCAGGGTACAAAATAGCATAAAACAGAAGTGACACATTATATCTTCCCCTTAAAGGGG-TTTTACTGGGAATAGTTGAAGAGAAACAAAATATAACATCCTTAATGTAAAAAGT s panTro4.chr1 225071557 717 + 228333871 AAAGGATTACTCAAGGCAGACTGAGTTGTGTTCCTTTAAC-CCTGCAGTCTTGACCTCA-AAATCTGGAAAGTCAGTGAGGAACCTGCTTCTTACCTGCTGTTAATTATCACCTATTGTGTTCATTTGCTGTGTAACTACACTTTCTCCCCAGCCGCTGGAAGTGATGGAAATTCTTGATAATAGCAAGTGGCCTGTGCTGACTCACGTTGTACTATTTCAAGTTAAGCACCATGTGTGAAATTCAGAATTCTGTGCCTATGGCAACTCCAATGGGCACGGAGCAGAGAGTAG-ATTTTCCATTGTCTAAATGTGACTCTTACTTTGAGTCACGCAGGTATAATTATAGGTATTTTATATTATCA-TCCTCAGCACAGTCTAAACTGTGCCTTTTGTTCT----C-GTGTTCTGTTTTACTA----CATGTACATTATACATTTTATTCCATTACATCAAATGGACTATTA-------GAGTCAG--------AATTGGTCTCTGTCTTTGCCCTTTAATCTGTGGTGCATGTGGAATATCTGAGCTTCTCCTGTCTATATAATTAGGCTGCAAAACAGATGATATTTTGCTTTAAAAATAACTATTTCCATAGCACGCTGCTGTGACCCAAGCTTGCAGGGTACAAAATAGCATAAAACAGAAGTGACACATTATATCTTCCCCTTAAAGGGG-TTTTACTGGGAATAGTTGAAGAGAAA----ATATAACATCCTTAATGTAAAAAGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226440962 718 - 229942017 AAAGGATTACTCAAGGCAGACTGAGTTATGTTCCTTTAAC-CCTGCAGTCTTGACCTCA-AAATCTGGAAAGTCAGTGAGGAACCTGCTTCTTACCTGCTATTAATTATCCCCTATTGTGTTCATTTGCTATGTAACTATACTTTCTCCCCAGCCACTGGAAGTGATGTAAATTCTTGATAATAGCAAATGGCCTGTGCTCACTCACCTTGCACTATTTCAAGTTAAGCACCATGTGTGAAATTCAGAATTCTGTGTCTACGGGAACTCCAGTGGGTATAGAGCAGAGAGTAG-ATTTTCCATTGTCTAAATGTGACTCTTACTTTGAGTCACGCAGGTATAATTATAGGTATTTTATAAT---A-TCCTCAGCACAGTCTAAACTGTGCCTTTTGTTCT----C-GTGTTCTGTTTTACTA----CATGTACATTATACATTTTATTCCATTACATCAAATGGACTATTA-------GAGTCAG--------AATTGGTCCCTGTCTTTGCCCTTTAATCTGTGGTGCATGTGGAATATCTGAGCTTCTCCTTTCTATATAATTAGGCTGCAAAACAGATGATTTTTTGCTTTAAAAATAACTATTTCCCTAGCGTGCTGCTGTGACCCAAGCTTGCAGGGTACAAAATAGCATAAAACAGAAGTGATACATTATATCTTCCCCTTAAAGGGA-TTTTACTGGGGATAGTTGAAGAGAAACAAAATATAACATCCTTAATGTAAAAAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140324409 721 - 143122389 AAAGGATTACTCAAGGCAGACTGAGTTATGTTCCTTTAAC-CCTGCAGTCTTGACCTCA-AAATCTGGAAAGTCAGTGAGGAAACTGCTTCTTACCTGCTATTAAGGATCACCTATTGTGTTCATTTCCTATGTAACTATACTTTCTCCCCAGCCACTGGAAGTGATGTAAATTCTTGATAATAGCAAATGGCCTGTGCTCACTCACCTTGTACTATTTCAAGTTAAGCACCATGTGTGAAATTCAGAATTCTGTGCCTACGGGAACTCCAGTGGGTATAGAGCAGAGAGTAG-ATTTTCCATTGTCTAAATGTGACTCTTACTTTGAGTCATGCAGGTATAATTACAGGTATTTTATAATATTA-TCCTCAGCACAGTCTAAACTGTGCCTTTTGTTCT----C-GTGTTCTGTTTTACTA----CATGTACATTATACATTTTATTCCATTACATCAAATGGGCTATTA-------GAGTCTG--------AATTGGTCCCTGTCTTTGCCCTTTAATCTGTGGTGCATGTGGAATATCTGAGCTTTTCCTTTCTATATAATTAGGCTGCAAAACAGATGATATTTTGCTTTAAAAATAACTGTTTCCCTAGGGCGCTGCTGTGACCCAAGCTTGCAGGGTACAAAACAGCATAAAACAGAAGTGACACATTATATCTTCCCCTTAAAGGGG-TTTTACTGGGGATAGTTGAAGAGAAACAAAATATAACATCCTTGATGTAAGAAGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17035879 721 - 229590362 AAAGGATTACTCAAGGCAGACTGAGTTATGTTCCTTTAAC-CCTGCAGGCTTGACCTCA-AAATCTGGAAAGTCAGTGAGGAACCTGCTTCTCACCTGCTATTATTTGTCGCCTATTGCGTTCATTTGCTATGTAACTATGCTTTCTCCCCAGCCACTGGAAGTGATGTAAATTCTTGATAGTGGCAAATGGCCTGTGCTCACTCACCTTGTACTATTTCAAGTTAAGCACCGTGTGTGAAATTCAGAATTCTGTGCCTATGGAAACTCCAATGGGTATAGAGCAGAGAGTAG-ATTTTCAATTGTCTAAATGTGACTCTTACTTTGAGTCACGCAGGCATAATTATAGGTATTTTATAATATTA-TCCTCAGCACAGTCTAAACTGTGCCTTTTGTTCT----C-GTGTTGTGTTTTACTA----CATGTACATTATACATTTTATTCCATTACATCAAATGGACTATTA-------GAGTCTG--------AACTGGTCCCTGTCTTTGCCCTTTAATCTGTGGTGCATGTGGAATATCTGAGCTTCTCCTGTCTATATAATTAGGCTGCAAAACAGATGATATTTTGCTTTAAAATGAACTATTTCCCTAGCGCGCTGCTGTGACCCGAGCTTGCAGGGTACAAAATAGCATAAAACAGAAGTGACACATTACATCTTCCCCTTTAAGGGG-TTTTACTGGGGATAGTTGAAGAGAAGCAAAATATAACATCCTTAATGTAAGAAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223799739 717 - 227556264 AAAGGATTACTCAAGGCAGACTGAGTTATGTTCCTTTAAC-CCTGCAGGCTTGACCTCA-AAATCTGGAAAGTCAGTGAGGAACCTGCTTCTCACCTGCTA----TTGTCACCTATTGCGTTCATTTGCTATGTAACTATGCTTTCTCCCCAGCCACTGGAAGTGATGTAAATTCTTGATAGTGGCAAATGGCCTGTGCTCACTCACCTTGTACTATTTCAAGTTAAGCACCGTGTGTGAAATTCAGAATTCTGTGCCTATGGAAACTCCAATGGGTATAGAGCAGAGAGTAG-ATTTTCAATTGTCTAAATGTGACTCTTACTTTGAGTCACGCAGGCATAATTATAGGTATTTTATAATATTA-TCCTCAGCACAGTCTAAACTGTGCCTTTTGTTCT----C-GTGTTGTGTTTTACTA----CATGTACATTATACATTTTATTCCATTACATCAAATGGACTATTA-------GAGTCTG--------AACTGGTCCCTGTCTTTGCCCTTTAATCTGTGGTGCATGTGGAATATCTGAGCTTCTCCTGTCTATATAATTAGGCTGCAAAACAGATGATATTTTGCTTTAAAACGAACTATTTCCCTAGCGCGCTGCTGTGACCCGAGCTTGCAGGGTACAAAACAGCATAAAACAGAAGTGACACATTACATCTTCCCCTTTAAGGGG-TTTTACTGGGGATAGTTGAAGAGAAGCAAAATATAACATCCTTAATGTAAGAAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16850091 725 - 220367699 AAAAGATTACTCAAGGCAGACTGAGTTATGTTACTTTAAC-CCTGCAGTCTTGACCTCA-AAATCTGGAAAGTCAGTGAGGAACCTGCTTCTTACCTGCTATTATTTGTCACCTAGTGCGTTCATTTGCTATGTAACTATGCTTTCTCCCCAGCCACTGGAAGTGATGTAAATTCTTGATAGTGGCAAATGGCCTGTGCTCACTCACCTTGTACTATTTCAAGTTAAGCACCGTGTGTGAAATTCAGAATTCTGTGCCTATGGAAACTCCAATGGGTATAGAGCAGAGAGTGG-ATTTTCCATTGTCTAAATGTGACTCTTACTTTGAGTCACGCAGGCATAATTATaggtattttataatatta-tccTCAGCACAGTCTAAACTGTGCCTTTTGTTCTCACAC-ATGTTCTGTTTTACTA----CATgtacattatacattttattccATTACATCAAATGGACTATTA-------GAGTCTG--------AACTGGTCCCTGTCTTTGCCCTTTAATCTGTGGTGCATGTGGAATATCTGAGCTTCTCCTGTCTATATAATTAGGCTGCAAAACAGATGATATTTTGCTTTAAAACTAACTATTTCCCTAGCGCGCTGCTGTGACCCGAGCTTGCAGGGTACAAAATAGCATAAAACAGAAGTGACACATTACATCTTCCCCTTTAAGGGG-TTTTACTGGGGATAGTTGAAGAGAAGCAAAATATAACATCCTTAATGTAAGAAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82649627 721 + 85787240 AAAGGATTACTCAAGGCAGACTGAGTTATGTTCCTTTAAC-CCCACAGTCTTGACCTCA-AAATCTGGAAAGTCAGTGAGGAACCTGCTTCTTACCTGCTATGATTTGTCACCTATTGCGTTCATTTGCTATGTAACTATACTTTCTCCCCAGCCGCTGGAAGTGATGTAAATTCTTGATAGTGGCAAATGGCCTGTGCTCACTCACCTTGTACTATTTCAAGCTAAGCACCGTGTGTGAAATTCAGAATTCTGTGCCTATGGAAACGCCAGTGGGTATAGAGCAGAGAGTGG-ATTTTCCATTGTCTAAATGTGACTCTTACTTTGAGTCACGCAGGCATAATTATAGGTATTTTATAATATTA-TCCTCAGCACAGTCTAAACTGTGCCTTTTGTTCT----C-GTGTTCTGTTTTACTA----CGTGTACATTATACATTTTATTCCATTACATCAAATGGACTATTA-------GAGTCTG--------AACTGGTCCCTGTCTTTGCCCTTTAATCTGTGGTGCATGTGGAATATCTGAGCTTCTCCTGTCTATATAATTAGGCTGCAAAACAGATGATATTTTGCTTTAAAACTAACTATTTCCCTAGCGCGCTGCTGTGACCCGAGCTTGCAGGGTACAAAATAGCATAAAACAGAAGTGACACATTACGTCTTCCCCTTTAAGGGG-TTTTACTGGGGATAGTTGAAGAGAAGCAAAATATAACATCCATAATGTAAGAAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14362796 722 - 49578535 AAAGGATTACATGAGGCAGACTGAGTTATGTGCCTTTAAC-CCTGCAGTCTTGACCTCA-AAATCTGGAAAGTCGGCGAGGAACCTGCTTCTTACCTGCTATGAATGATCACCTATTGCGTTCCTTTGTTACGCGGCTACACTTTCTCCCCAGCCACTGGAAGTGATGTCAGTTCTTGGTAACAGCGCATGGCGTGTGCTCACTCACCGTGTGCTATTTCAAGTGAAGCTGCACTTGTGAAATTCAGAATTCTGTGACTACTG-AACTCCGGTGGGTGCAGAGCAGAGAGTAG-ATTTTCCATTGTCTAAATGTGACTCTTCCTTTGAGTCATGCAGGTATAATTACAGGTATTTTATAATATTACTCCTCGGCACAGTCTAAACTATGCCTTTGTTCTC----T-GAGTTCTGTTTTACTA----CATGCACATTATACATTTTATTCCATTACATCAAATGGACTATTA-------GAGTCTG--------AATTGGTCCCTGTCTTTGCCCTTTAATCTGTGGTGCACGTGGAATATCTGAGCTTCTCCCTTCTATATAATTAGGCTGCAAAACAAATGATATTTTGCTTTAAGAATAACTATTTCCCTAGCGCGCTGCTGTGACCTGAGCTTGAAGGATACAAAATAGCATAAAACAGAAGTGACAAATTATATCTTCCCCTTTAAAGGATTTTTACTGGGGATAGTTGAAGAGAAACAAAATGTAACATCCTTAATGTAGAAAGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178880840 703 + 195471971 aaaaaaTTGCAGAAGACAGATTGGACTATGTTCATTTAACTCCCACGTTCTTGATCTCAGGAATCTGAAAGACAGATAAGGAGCCAGCTCCTCGCCTGCAGTCGTTCCCTCCCCCTTGC--TCATTCCTTGCAGAATGA-----------------CTTGTGGTGATGTAAGTTCCTGACGCTATCAAACAGCCTGTGCCCACTGGCTTCGCACCCTGCTAGATTAAGTACCTTTTGGGAGAGCCAG-ATTCTCTGACCACCCAAACGCCAGTGGGTAGAGGGCAGAGAGCAGCGTTTTCCATTGCGTAAGGGTGCCTCTCATTCTGAGTCATGCTG--CTAATTACAGGTATTTTATAAAAC---TCTTCAACACAATCTAAGCCA--CCCTTTGTTCT----CTGTGTCCTGTTTCACTATGTGTGTGTGTATTATACATTTTATTCCATTACATCAAATGGACTATTAAGTCTGGAGGTCCA--------AATTGGTCTCTGTCTCTGCCCTTTCATCTGGGATGTGTGAGGAATACCTAAGCCTTTCCTGCCTGCATAATTGGGCTGCAAAATAGATGATATTTTG-TTTAAAAATAACCGTTTCTTTAACGCATTGCCATGAGCCAATCTTGCATGATTTGAAATAGGGTAGAGAAGAAATAA-----TATGGCCCCTCCGAGAAGGGG-TTGCCCCTGGGACAGTTGAAAATGAGCAAAATG-AGCTTCATTCATGTCTACAGT i mm10.chr1 I 198 I 1796 s canFam3.chr7 36459519 687 + 80974532 GAAGGGTGACTGGAGGCA------CTTTTGCTCCTCTTAC-TCTGCAGCTGTGACCCTGGAAATCTGACGAGTCGATGAGGAATTCTCT-CGTACCTGCT-----------CGTATTGT--TCATTG-----ATGACAGAACTTTCTCGCCAGCCATCTGTAGTGACGTACGTCGTTGCCAGTAGCAGATGGCCGGTGCTTACTCACCTTGTACCCTCCCGGATGAAGCATCTTGTGTGGCAGCCAGAATT-TGTGGCCACTGGAGCTTCAGTGGGTACAGTAGACAGACTCG-ATTTTTCATTGTCTGAATGTGACTCCCGCTTTGAGTCATGTGGATATAATTATGGGTATTTTATAACGTGATTTCTCAGCACGATCTAAACTATGCCTTTTGTTCT----C----TTTTATTTTACTA----CATGTACATCATGCATTTTATTCCATTACATCAAATGGACTATTA-------GAGTCTGAAAGTCCAAACTGGTCCCTGTCTTTGCCCTTTAATCTACAGCACACGTGGATTATCTGAGCTGCTCCTGTCTATATAATTAGGTTGCAAAAGAGATGATATTTTGCTTTAAAAATAACTATTTCCCTAGCATGCTGCCATGACCTGATCTTGCATGATACGAGATGGGGTAAAAGAGAAGTTACATATTCTATGTTCCCTCACGAGGAT-TTTTCCTGGGGATAGTAGAAGA----TAAAATGTACCGTCCATT----------- i canFam3.chr7 C 0 C 0 a score=2219741.000000 s hg38.chr1_KI270759v1_alt 316583 757 + 425601 TCTTTGCCATAGACGTGCC--AGTAGCTGGAGA-GCTGGAATTGCAATGC------------TTTCTTTAAGTATTTCTCACCTTTTTTT-CTCAGTACTAGATAT----------------------------------GGAATTTGAGGATAGGAAGGGGTGGAGG-CAGATTAGCCTTAGGACAGTGGTTGCCGAATATTTTCATCCTACAGCATGAGCAGTGCTGCATCAGCCTTGTCCTT---CGGGCTCT-TCTGCAGACGCGTGGATGCCTAGATCCCTCCCACGCACCCCGAGTGCCACCTGCAA---TGGTCCAGACACACGCGGGTCCCACACGCTCTGCTCGCTTTTTGTACCAACACCTTT-CAATCTTGCCCCAAATTACTTGGCCTCCACAACAGCTTTGGGAAGTTTCCATCTCTGCCTTTGCCATTTTCCTTCTGTGCAGAGTAGGGAAAGGCAGAGGGAAGAGTTGCTGTCCTGGC-AGTAACAGGAGG---CAGGCCAGGTATGAGGCTGTAAGCTGGGCCGCCTGGAAAGATAGGGATCCAGAGGCCTGGAGGAGCAGCATT-------------------------------------------------------------------------------------CCGCTGCTGCCT-GGGATTGA---GGCGGGGGGAAGGGAGACAGCCAAGGAG-TGGGTGATGTACCCAGAGACACGCCTCTCTGGAAGAGTGGGGCCTGGGGCAAAAAGGCGG---CCTTCTCCGGCTGCTTCGTGGAGCTGATGgaggccgcaggatgtag--ttgagagctcaggtcttgcagt----cagtctgtggtttgaatcctag----ctctactactggctgcaggatcgtgagcaagtttttttttt s panTro4.chr1 225072274 758 + 228333871 TCTTTGCCATAGACGTGCC--AGTAGCTGGAGA-GCTGGAATTGCAATGC------------TTTCTGTAAGTATTTCTCACCTTTTTTTTCTCAGTACTAGATAT----------------------------------GGAATTTGAGGATAGGAAGGGGTGGAGG-CAGATTAGCCTTAGGACAGCGGTTGCCGAATATTTTCATCCTACAGCATGAGCAGTGCTGCGTCAGCCCTGTCCTT---CCGGCTCT-TCTGCAGACGCGTGGACGCCTAGATCCCTCCCACGCACCCCGAGTGCCACCTGCAA---CGGTCCAGACACACGCGGGTCCCACACGCTCTGCTCGCTTTTTGTACCAACACCTTT-CAATCTTGCCCCAAATTACTTGGCCTCCACAACAGCTTTGGGAAGTTTCCATCTCTGCCTTTGCCATTTTCCTTCTGTGCAGAGTAGGGAAAGGCAGAGGGAAGAGTTGCTGTCCTGGC-AGTAACAGGAGG---CAGGCCAGGTATGAGGCTGTAAGCTGGGCCGCCTGGAAAGATAGGGATCCAGAGGCCTGGAGGAGCAGCATT-------------------------------------------------------------------------------------CTGCTGCTGCCT-GGGATTGA---GGCGGGGGGAAGGGAGACAGCCAAGGAG-TGGGTGATGTACCCAGAGACACGCCTCTCTGGAAGAGTGGGGCCTGGGGCAAAAAGGCGG---CCTTCTCCGGCTGCCTCGTGGAGCTGATGgaagctgcaggatgtag--ttgagagctcaggtcttgcagt----cagtctgtggtttgaatcctag----ctctactactggctgcaggatcgtgagcaagtTTTTTTTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226441680 792 - 229942017 TCTTTGCCATAGATGTGCC--AGTAGCTGGAGA-GCTGGAATTGC-ATGC------------TTTCTGTAAATATTTCTCACCTTTTTTT-CTCAGTACTAGATATCGGAATTCACCTTTTTTTCTCAGTACTAGATATCGGAATTTGAGGGTAGGAACGGGTGGAGG-CACATTAGCCTTAGGACAGTGGTTGCTGAATATTTTCATCCTACAGCACGAGCAGTGCTGCGTCAGCCCTGTCCTT---TGGGCTCT-TCTGCAGAGGTGTGGACGCCCAGATCCCTCCTATGCACCCCGAGTGCCACCTGCAA---TGGTCCAGACACACGCGGGTCCCACACGCTCTGCTCGCTTTTTGTACCAACACCTTT-CAAGCTTGCCCCAAATTACTTGGCCTCCACAACAGCTTTGGGAAGTTTCCATCTCTGCCTTTGCCATTTTCCTTCTGTGCAGAGTGGGGAAAGGCAGACGGAAGAGTTGCTGTCCTGGC-AGTAACAGGAGG---CAGGCCAGGTATGAGGCTGTGAGCTGGGCCGCCTGGAAAGATAGGGGTCCAGAGGCCTGGAGGAGCAGCATT-------------------------------------------------------------------------------------CCGCTGCTGCCT-GGGATTGA---GGCGGGGGGAAGGGAGACAGCCAAGGAG-TGGGTGATGTGCCCAGAAACACGCCACTCTGGAAGA--GGGGCCTGGGGCAAAAAGGCGG---CGTTCTCCGGCTGCCTCATGGAACTGATGGACGCCacaggatatag--ttgtgagctcaggtcttgcagtcaggcagtctgtggtttgaatcctag----ctctactactggccgcaggatcgtgagcaagttTTTTTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140325130 761 - 143122389 TCTTTGCCATAGACGTGCC--AGTAGCTGGAGA-GCTGGAATTGCGATGC------------TTTCTGTAAATATTTCTCACCTTTTTTT-CTCAGTACTAGATAT----------------------------------GGAATTTGAGGGTAGGAAGGGGTGGAGG-CAGATTAGCCTTAGGACAGTGGTTGCTGAATATTTTCATCCTACAGCATGAGCAGTACTGCATCAGCCCTGTCCTT---CGGGCTCT-TCTGCAGACACATGGACGCCCAGATCCCTCCCACGCACCCCGAGTGCCACCTGCAA---TGGTCCAGACACACGCGGGTCCCACACGCTCTGCTCGCTTTTTGTACCAACACCTTT-CAGTCCTGCCCCAAATTACTTGGCCTCCACAACAGCTTTGGGAAATTTCCATCTCTGCCTTTGCCATTTTCCTTCTGTGCAGAGTGAGGAAAGGCAGAGGGAAGAGTTGCTGTCCTGGC-AGTAACAGGAGG---CAGGCCAGGTATGAGGCTGTAAGCTGGGTCGCCTGAAAAGATAGGGATCCAGGGGCCTGGAGGAGCAGCATT-------------------------------------------------------------------------------------CCGCTGCTGCCT-GGGACTGA---GGCGGGGGGAAGGGAGACAGCCAAGCAG-TGGGTGATGTGTCCAGAAACACGCCACTCTGGAAGACTGGGGCCTGGGGCAAAAAGGCGG---TGTTTTCCAGCTGCCTCATGGAACTGATGGAGGCCACAGGATgtag--ttttgagctcaggtcttgcagtcagacagtctgtggtttgaatcctag----ctctactactggctgcaggatcgtgggcaagtttttttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17036600 838 - 229590362 TATTTGCCATAGACGTGCC--AGTAGCTGGAGA-GCTGGAATTGCAATGCtttctgtaaatatttctgtaaatatttctCACCTTTTTTC-CTCCGTACTAGATAT----------------------------------GGAAATTGAGGGTAGGAAGGGGTGGAGG-CAGATTAGCCTTAGGACAGTGGTTCCTGAATATTGTCATCCTGCATCATGCGCAGTGCTGCGTCAGTCCTATCCTT---CAGGCTGT-TCTGCAGATGCGTGGACGCCCTGATCCCGCCCACGCACCCCGAATGCCGCCTGCGAATGTGGTCCAGACACACGCGGGTCCCACACACTCTGCTCGCTTTTTGTACCAACACCTTT-CAATCTTGCCCCAAATTACTTGGCCTCCACAACAGCTTTGGGAAGTTTCCATCTCTGCCTTTGCCATTTTCCTTCTGTGCAGAATAGGGAAAGGCAGAGGGAAGAGCTGCTGTCCTGGCAAGTAACAGGAGG---CAGGCCAGGTATGAGGCTGTGAGCTGGGCCACCTGAAAAGATAGGGATCCAGAGGCCTGGAGGAGCAGCATCCCGCTGCTGCCTGGGACTGAGGCGGGGGAAGGGAGACAAAAAAGACAGGGATCCAGAGG--------------------------CCGCTGCTGCCT-GGGACTGA---GGC-GGGGGCAGGGAGACAGCCGAGGAG-TGGGTGATGTGCCCAGAAACACACCACTCTGGAAGAGTGGGGCCTGGGGCCAAACGGCGGTGCTGTTCTCCTGCTGCCTCGTGGAACTGACagaggccacaggatgtag--ctgagagctcaggtcttgcagtcagacaatccatagtttgagtcctag----ctctactactggctgcaggatcctgcgcaagtttcttTTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223800456 778 - 227556264 TATTTGCCATAGACGTGCC--AGTAGCTGGAGA-GCTGGAATTGCAATGCtttctgtaaatatttctgtaaatatttctCACCTTTTTTC-CTCCGTACTAGATAT----------------------------------GGAAATTGAGGGTAGGAAGGGGTGGAGG-CAGATTAGCCTTAGGACAGTGGTTCCTGAATATTGTCATCCTGCATCATGCGCAGTGCTGCGTCAGTCCTGTCCTT---CAGGCTGT-TCTGCAGATGCGTGGACGCCCTGATCCCGCCCACGCACCCCGAATGCCGCCTGCGAATGTGGTCCAGACACACGCGGGTCCCACACACTCTGCTCGCTTTTTGTACCAACACCTTT-CAATCTTGCCCCAGATTACTTGGCCTCCACAACAGCTTTGGGAAGTTTCCATCTCTGCCTTTGCCATTTTCCTTCTGTGCAGAATAGGGAAAGGCAGAGGGAAGAGCTGCTGGCCTGGC-AGTAACGGGAGG---CAGGCCAGGTATGAGGCTGTGAGCTGGGCCACCTGAAAAGATAGGGATCCAGAGGCCTGGAGGAGCAGCATC-------------------------------------------------------------------------------------CCGCTGCTGCCT-GGGACTGA---GGC-GGGGGCAGGGAGACAGCCGAGGAG-TGGGTGATGTGCCCAGAAACACACCACTCTGGAAGAGTGGGGCCTGGGGCCAAACGGCGGTGCTGTTCTCCTGCTGCCTCGTGGAACTGACGgaggccacaggatgtag--ctgagagctcagatcttgcagtcagacaatccatagtttgagtcctag----ctctactactggctgcaggatcctgcgcaagtttcttTTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16850816 837 - 220367699 TATTTGCCATAGACGTGCC--AGTAGCTGGAGA-GCTGGAATTGCAATgctttctgtaaatatttctgtaaatatttctcaCCTTTTTTC-CTCCGTACTAGATAT----------------------------------GGAAATTGAGGGTAGGAAGGGGTGGAGG-CAGATTAGCCTTAGGACAGTGGTTCCCGAATATTGTCATCCTGCATCATGCGCAGTGCTGCGTCAGTCCTGTCCTT---CAGGCTGT-TCTGCAGATGCGTGGACGCCCTGATCCCGCCCACGCACCCCGAATGCCGCCTGCGAATGTGGTCCAGACACACGCGGGTCCCACACACTCTGCTCGCTTTTTGTACCAACACCTTT-CAATCTTGCCCCAAATTACTTGGCCTCCACAACAGCTTTGGGAAGTTTCCATCTCTGCCTTTGCCATTTTCCTTCTGTGCAGAATAGggaaaggcagagggaagagctgcTGTCCTGGC-AGTAACAGGAGG---CAGGCCAGGTATGAGGCTGTGAGCTGGGCCATCTGAAAAGATAGGGATCCAGAGGCCTGGAGGAGCAGCATCCCGCTGCTGCCTGGGACTGAGGCGGGGGAAG--------------------------GGAGACAAAAAAGACAGGGATCCAGAGGCTGCTGTTGCCT-GGGACTGA---GGC-GGGGGCAGGGAGACAGCCGAGGAG-TGGGTGATGTGCCCAGAAACACACCACTCTGGAAAAGTGGGGCCTGGGGCCAAACGGCGGTGCTGTTCTCCTGCTGCCTCGTGGAACTGACGGAGGCCACAGGATGTAG--CTGAGAGCTCAGGTCTTGCAGTCAGACAATCCATAGTTTGAGTCCTAG----CTCTACTACTGGCTGCAGGATCCTGCacaagtttctttttg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82650348 751 + 85787240 TATTTGCCATAGACGTGCC--AGTAGCTGGAGA-GCTGGAATTGCAATGC------------TTTCTGTAGATGTCTCTCACCTTTTTTC-CTCAGTAGTAGATAT----------------------------------GAAAATTGAGGGTAGGAAGGGGTGGAGG-CAGATTAGCCTTAGGACAGTGGTTCCCGAATATTATCATCCTACATCATGAGCAGCGCTGCGTCAGTCCTGTCCTT---CAGGCTGT-TCTGCAGATGCGTGGACGCCCTGATCCCGCCCACGCACCCCGAATGCCGCCTGCAAATGTGGCCCAGACACACGCGGGTCCCACACACTCTGCTCGCTTTTTGTACCAACACCTTT-CAATTTTGCCCCAGATTACTTGGCCTCCACAACAGCTTTGGGAAGTTTCCATCTCTGCCTGTGCCATTTTCCTTCTGTGCAGAACAGGGAAAGGCAGAGGGAAGAGCTGCTGTCCTGGC-AGTATGAGGAGGAGACAGGCCAGGTATGAGGCTGTGAGCTGGGCCACCTGAAAAGATAGGGATCCAGAGG------------------------------------------------------------------------------------------------------CCGCTGCTGCCT-GGGACTGAGGCGGC-GGGGGCAGGGAGACAGCCCAGGAG-TGGGTGATGTGCCCAGAAACACACCGCTCTGGAAGAGTGGGGCCTGGGGCAAAACAGCAGTGCTGTTCTCCTGCTGCCTCGTGGAACTGATGgaggccacaggatgtag--ctgagagctcaggtcttgcagtcacacaatccatagtttgagtcctag----ctctactactggctgcaggatcgtgcgcaagttgttt---- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14363518 725 - 49578535 TCTTTGCCATAGATGTGTC--AGTAGCTGGAGA-GCTTGAATTGCGACGC----------------TGTCAATGTTGCTCACCTTTTTTT-CTCAGTACTAGATTT----------------------------------GGAAATTGAGGGTAGGAAGGGGTAGAGG-CAGGTTGGCCTTAGGACAGTGGTTCCTGAATACTTCCATCCTACAGCACGAGCAGTGCGGCCTCAG-----------------------CTGCAGAGGTGTGGATGCCCAGATCCCTCCCATGCA-CTGGGATGCCACCTGCAG---TGCTGTGGGCACATGTGGGTCCCATGCACTCTGCTCGCTTTCTGTAACAACAGCTTT-CAATCTTTCCCCAGATTACTTGGCCTCCACAACAGCTCGGAGAAGTTTCCATCTCTGCCTTTGCCATTATCCTTCCGTGCAGAGTAGGGAAAGGCATAGGGAAGAGTGGCTGTCCTGGC-AGCAACAGGAGG---CAGGCCAGGTATGAGGGTGTGAGCTGGGCCACCTGAAAAG--AGGAATCCAGAGGCTTGAAGGAGCAGCATT-------------------------------------------------------------------------------------CTGCTGCTGCCT-GGGGCTGA---GGC-GGGGAAAGGGAGACAGCCAAGGAG-TGGGTGATGTACCCAGGAACACAGCACTCTGGAAGAGTGGGGCCTGGGGCAGAAAGGCAGCCTTGTACTCCTGCCATCTCATGGAAATGATGgaggcaacatgacgtag--tttagagctcaggtcctgccgt----cagtctgtggtttgaatcctagccctctctgctactggctgcaggatcacgggca------------ i calJac3.chr19 C 0 C 0 s canFam3.chr7 36460206 717 + 80974532 TCTTGGCTGT-GATGTACCAGAGTAACTGGACATGCCTGTGTTGAAATGC------------------TATACTTTCCTTTTTTTGTTTCCCTCTGTCCTAGATGC----------------------------------TGACGTTGAGGGTGGGGCATGGTAGAGGCCAAGTTAGGGTTAGGACAGTGGTTCCCGAATGCTTTCATCCTATAGCATGAGCTAAGCCTCCT-ACATTTGTGCTTGTGCAGGCTCTCCCTGCAGATGTGTGGGCACCCAGACACTGGCCACGTGCTCATCACACATCCACCCG----GACCCAGGCATGGCCCTGTCCCACCCTCTGCATCTACTTTCCCAACCAACCCCTTTGCCACATAGCCCCAGAAGTTGTGGCTTCTGGAACAGTTTTCAGAAGTTTCTGTGGCCACCTTTGCTGCTGGCCTTCCTTGCAGAGTAGGGGAAAGCAGAGGGAAGAATAGCTGTCCCAGA-AGCAGCAG-------C--------------------GGCTGAGCCACCCTGGAAGGTAGGAATCCAGAGG-------GGTCAGT----------------------------------------------------------------------------------------CTGCTGCTGCCTGGGGAGTGA---GGGAGAAGGAAAGGAAATGATCTAGAAGCCGGGTGATGTG-CTGGGGGTACAGTAACCTCAGACAGTAGGGCC-GGGACAGAAGGGAAGCTTGGCACTCCTGCTGTCTTG-GGGACTGGCTGAGGCCACGTGGTGCAGGATAAAGAGCATGGGGCTT---------CAA-----GGTGTCAAGCCCAG----CTGCACTAGTGACAGTAGTATTGTGGCCAGTTTCCTTTTT- i canFam3.chr7 C 0 I 6608 e mm10.chr1 178881543 1796 + 195471971 I a score=570165.000000 s hg38.chr1_KI270759v1_alt 317340 222 + 425601 ttttttttttttt---tttgttgttttttaacaactttaatgagatatacctgagctacaataaactgtacatattaaat-----cat--ataacttgatgttttatcatatgtatatgcctatgaaaccgtcctcaatcaagataatgaatatattcttcacccccaaaagtttcctcgggagccttgcaatccctgcctccagctcctcttccttcctgtctccagaccc s panTro4.chr1 225073032 219 + 228333871 TTTTGTTGTTGTT------GTTGttttttaacaactttaatgagatatacctgagctacaataaactgtacatattaaat-----cat--ataacttgatgttttatcatatgtatatgcccatgaaaccatcctcaatcaagataatgaatatattcttcacccccaaaagtttcctcgggagccttgcaatccctgcctccagcttctcttccttcctgtctccagaccc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226442472 202 - 229942017 -----------------------ttttttaacaactttaatgagatatacctgagctacaataaactgtacctattaaat-----cat--ataacttgatattttatcgtatgtatatgcccatgaaaccatcctcaatcaagataatgaacatattcttcacccccaaaagtttcctcgggagccctgcaatccctgcctccagctcctcttccttcctgtctccagaccc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140325891 226 - 143122389 ttctttctttcttttttttttttttttttaacaactttaatgagctatacctgagctacaagaaactgtacatattaaatctgtacat--ataacttgatgttttatcgtatgtatatgcccatgaaaccatcctcaatcaagat----aacatattcttcacccccaaaagtttcctcaggcaccttgcaatccctgcctccagctcctcttcctccctgtctccagaccc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17037438 210 - 229590362 TTTTTTGT---------------ttttttaacaactttaatgagatatacctgagctacaataaactgtacatattaaat-----cat--ataacttgatgttttatcatatgtatatgcccatgaaaccatcgtcaatcgagataatgaacatattctccacccccaaaagtttccttgggagccttgccgttgctgcctccagctcctcttccttgctgtctccagaccc i rheMac3.chr1 C 0 I 6 s macFas5.chr1 223801234 210 - 227556264 TTTTTTGT---------------ttttttaacaactttaatgagatatacctgagctacaataaactgtacatattaaat-----cat--ataacttgatgttttatcatatgtatatgcccatgaaaccatcgtcaatcgagataatgaacatattctccacccccaaaagtttccttgggagccttgccgttgctgcctccagctcctcttccttgctgtctccagaccc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16851653 210 - 220367699 ttttttgt---------------ttttttaacaacttTAATGAGATATACCTGAGCTACAATAAACTGTACCTATTAAAT-----CAT--ATAACTTGATGTTTTATCATATGTATACGCCCATGAAACCATCCTCAATCTAGATAATGAACATATTCTCCACCCCCAAAAGTTTCCTTGGGAGCCTTGCCGTTGCTGCCTCTGGCTCCTCTTCCTTGCTGTCTCCAGACCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82651099 212 + 85787240 TTTTTTTT---------------ttttttgacaactttaatgagatatacctgagctacaataaactgtacatgttaaat-----cataaataatatgatgttttatcatatgtatatgcccatgaaaccatcctcaatcgagataatgaacatattctccacccccaaaagtttccttgggagccttgccgtcgctgcctccagctcctcttccttgctgtctccagaccc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14364243 202 - 49578535 ----TTTT---------------ttttttaacaactttaatgagatatacctgagatacaataaactatacatattaaat-----cat--acaatttgatatttcatcacatgtgtatgcccatgaaaccgtcctcaatcaagataacgaacatatccttgacccgc--aggtttccctgggaaccttgcagt--ctgtctgaagcccttctcccttcctgtctccagactc i calJac3.chr19 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I a score=803.000000 s hg38.chr1_KI270759v1_alt 317562 10 + 425601 aggaaccact s panTro4.chr1 225073251 10 + 228333871 aggaaccact i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226442674 10 - 229942017 aggagccact i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140326117 10 - 143122389 gggaaccact i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223801444 6 - 227556264 --gctcca-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16851863 6 - 220367699 --GCTCCA-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82651311 6 + 85787240 --actcca-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14364445 8 - 49578535 --aaactgct i calJac3.chr19 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e rheMac3.chr1 17037648 6 - 229590362 I a score=2934301.000000 s hg38.chr1_KI270759v1_alt 317572 1073 + 425601 gaactactttcagtttctagacattagtgtggatttcctagaattttatgtaaaaggaaacatatcttgcagacggtactctcgtgtgtggcttctttcacttagcataatgattttgagatgtaatcatttcattgcctgtatcaatagttcatatatttatatttctgcataatagtccactgcccagatataccacagttggccgatccattcatctcttgatggacatttctgttgtttccagtttggggatattacaaataaaagtactaaaggttgagcatccctaatctgaaaattcgaaatccgagatgctccaaatctgaaactttgtgagcgccaaatgacatcacaagtagaaaattctacatctgaccgcatgtgacaggtcacaggaaaaactt--ttt-gtgtacaaaattatcaaaaatattgtctaagattatcttcaggctgtgtatataaggtatatatgaaacataaatgaatttaatgtttacgttgggtcctatttccaagatatgtcattagatatatgcaaatactccaaaat-------------------ctctggttccaagcatttcagataagggatattcagcttgtgtgagcatacatgcacaagtctttgtatggttatatggtttggctctgtcctcgcccaaatttcatgttgaattgtaattcccagtgttgggggagggacctggtgggaggtgattacatcatgaggatggatgtcccccatgctgttctcatcatagtgagttatgagatccggtggtttaagagtgtgtggtactctcccccctgctcactcgctctctctcctgctctgccatgggaagatg---tgtcttccttc--------------------------------------------------------------------actgtgagtcaatgaaacctattttcctcataaattacccagtctcaggtagttatttatagcagtatgaaaacagtcta----atatatatatggacatatattttctttcctttggggtaaaaacctatactagaactggaatcttatcaatgtctgggaatatttgaaaaaaaaa-aaaagaaaaactggaatggctgtaccatatagtagatgt---ttaacttttt s panTro4.chr1 225073261 1068 + 228333871 gaactactttcagtttctagacattagtgtggatttcctagaattttatataaaaggaaacatatcttgcagacggtactctcgtgtgtggcttctttcacttagcataatgattttgagatgtaatcatttcattgcctgtatcaatagttcatatatttatgtttctgcataatggtccactgcccagatataccacagttggccgatccattcatctcttgatggacatttgtgttgtttccagtttggggacattacaaataaaagtactaaaggttgagcatccctaatctgaaaattcaaaatccgagatgctccaaatctgaaactttgtgagcgccaaatgacatcacaagtagaaaattccacatctgaccgcatgtgacaggtcacaggaaaaactt--ttttgtgtacaaaattatcaaaaatattgtctaagattatcttcaagctgtgtatataag--atatatgaaacataaatgaatttaatgtttacattgggtcctatttccaagatatgtcattagatatatgcaaatactccaaaat-------------------ctctggttccaagcatttcagataagggatattcagcttgtgtgagcatacatgcacaagtctttgtatggttgtatggtttggctctgtcctcgcccaaatttcatgttgaattgtaattcccagtgttgggggagggacctggtgggaggtgattacatcatgaggatggatgtcccccatgctgttctcatcatggtgagttatgagatccgatggtttaagagtgtgtggtactttcccccctgctcactcgctctctctcctgctctgccatgggaagatg---tgtcttccttc--------------------------------------------------------------------actgtgagtcaatgaaacatattttcctcataaattacccagtctcaggtagttatttatagcagtatgaaaacagtcta----atatatatatggacatatattttctttactttggggtaaatacctataatagaactggaatcttatcaatgtctgggaatatttgaaaaaaaaa-aaaa----aactggaatggctgtaccatatagtagatgt---ttaacttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226442684 1075 - 229942017 gaactactttcagtttctaggcattagtgtggatttcctagaattttatataaaaggaaacatatcttgcagacggtactcttgtgtgtggcttctttcacttagcataatgattttgagatgtaatcatttcattgcctgtatcaatagttcatttatttatatttctgcataatggtacactgtccagatataccacagttggccgatccattcgtctcctgatggacatttgtgttgtttccagtttggggatattacaaataaaagtactaaaggctgagcatccctaatctaaaaattggaaatccgagatgctccaaatctgaaactttgtgagcaccaaatgacatcacaagtagaaaattccacatctgacctcatgtgacaggtcacaggaaaaactttgttttgtgtacaaaattatcaaaaatattgtctaagattatcttcaggctgtgtatataaggtatatatgaaacataaatgaatttaatgtttacattgggtcctatttccaagatatgtcattagatatatgcaaataccccaaaat-------------------ctctggttccaagcatttcagataagggatattcagcttgtgtgagcatacatgcacaagtctttgtatggttatatggtttggctctgtcctcacccaaatttcatgttgaattgtaattcccagtgttgggggagggacttggtgggaggtgattacatcatgaggatggatgtcccccatgctgttctcatcatagtgagttatgagatccgatggtttaagagtgtgtggcactttcccccctgctcgctcgctctctctcctgctctgccgtgggaagatg---tgtcttccttc--------------------------------------------------------------------gctgtgagtcaatgaaacctattttcctcataaattacccagtctcaggtagttatttatagcagtatgaaaacagtcta----atatatatatggacatatattttctctcctttggggtaaatacctataataaaactggaatcttatcaatgtctgggaatatttgaagaaaaaa-aaag-aaaaactggaatggctgtaccatatagtagatgt---ttaacttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140326127 1073 - 143122389 ggtctactttcagtgtctagacattagtgtggatttcccagaattttatatgaaaggaaacatatcttgcagacggtactc--atgtctggcttctttcacttagtgtaatgattttgagatgtaatcatttcattgcctgtatcaatagttcatttacttatatttctgcataatggttcactgtccagatatatcacagttggccgatccattcatctcctgatggacatttgtgttgtttccagtttggggatattacaaataaaagtactaaaggttgagcatccctactgtgaaaatttgaaatccgagatgctccaaatctgaaactttgtgagcgccaaatgacatcacaagtagaaaattccacatctgaccgcatgtgacaggtcacaggaaaaactttgttttgtgtataaaattatcaaaaatattgtctaagattatcttcaggctgtgtatataaggtatatatgaaacattaatgaatttaatgtttacattgggtcctatttccaagatatgtcattagatatatgcaaatactccaaaat-------------------ctctagttccaagcatttcagataagggatattcagcttgtgtgagcatacatgcac-agtctttgtatggttatatggtttggctctgtcctcgcccaaatttcatgttgaattgtaattcccagtgttgggggagggagctggtgggaggtgattagatcatgaggatggatgtcccccgtgctgttctcatcacagtgagttatgaggtccgatggcttaagagtgtgtggcatgtcccctcttgctcgcttgcttgctgtcctgctctgccatgggaagatgtcatgtcttccttc--------------------------------------------------------------------actgtgagtcaatgaaacctattttcctcataaattacccagtctcaggtagttatgtatagcagtaggaaaacagtcta------atatatatggacatatattttctttcctttggggtaaatacctataatagaactggaatcttatcaatgtctgggaatatttgaaaaaaaaa-aaag-aaaaactggaatggttgtaccatatagtagatgt---ttaacttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17037654 1058 - 229590362 gatctactttcagtttctagacattagtgtggatttcctagaattttatataaaaggaaacatgtcttgcagtcggtactcttttgtgtgacttctttcacttagcgtaatgattttgagatgtaatcttgtcattgcctgtatcaatagttcatttatttatatttctgcataatggt-------ccagatataccacagttggcctatccattcatctcctgatggacatttgtgttgtgcccagtttggggatgttacagacaaaagtactaaagtttaagcatccctaatctgaaaattcaaaatctgagatgctccaaatctgaaactttgtgagcaccaaatgacatcacaagtagaaaattccacctctgacctcatgtgacaggccacagtaaaaactttgttttgtgtacaaaattatcaaaaatgttgtctaagatgatcttcaggctatgtatataaggtatatatgaaacataaatgaatttaatgtttacattgggtcctatttccaagatatgtcattagatatatgcacatactccaaa---------------------ctctggttccaagcatttcggataagggatcttcagcctgggtgagcatgcacgcacaagtctgtgtgtggTTACCtggtttggctctgtcctcgcccggatttcatgttgaattgtaattcccaatgttgagggagggacctgctgggaggtgattagatcacggggatggatttcccccatgctgttctcatcatagtgagttatgagagccaatggtttaagagtgtgtggcacttccccccttgctccctgactc----tcctgctctgccatgggaagatg---tgtcttccttc--------------------------------------------------------------------actgtgagtcgatgaaacctattttcctcataaattatccactctcaggtagtcattaatagcagtctgaaaacagtcta----atataCAtatggacatatattttctttcctttggggtaaatacctataatagaactgGAATCTTATCAATGTCTGGGAATATTTGAAAAAAAAA-AAAA-----ACtggaatgactgtaccatatggtacatgt---ttaacttttt i rheMac3.chr1 I 6 C 0 s macFas5.chr1 223801450 1058 - 227556264 gatctactttcagtttctagacattagtgtggatttcctagaattttatataaaaggaaacatgtcttgcagtcggtactcttttgtgtgacttctttcacttagcgtaatgattttgagatgtaatcttgtcattgcctgtatcaatagttcatttatttatatttctgcataatggt-------ccagatataccacagttggcctatccattcatctcctgatggacatttgtgttgtgcccagtttggggatgttacagacaaaagtactaaagtttaagcatccctaatctgaaaattcaaaatctgagatgctccaaatctgaaactttgtgagcaccaaatgacatcacaagtagaaaattccacctgtgacctcatgtgacaggccacagtaaaaactttgctttgtgtacaaaattatcaaaaatgttgtctaagatgatcttcaggctatgtatataaggtatatatgaaacatcaatgaatttaatgtttacattgggtcctatttccaagatatgtcattagatatatgcacatactccaaa---------------------ctctggttccaagcatttcggataagggatcttcagcctgggtgagcatgcacgcacaagtctgtgtgtggTTACCtggtttggctctgtcctcgcccggatttcatgttgaattgtaattcccaatgttgagggagggacctgctgggaggtgattagatcacggggatggatttcccccatgctgttctcatcatagtgagttatgagagccaatggtttaagagtgtgtggcacttccccccttgctccctgactc----tcctgctctgccatgggaagatg---tgtcttccttc--------------------------------------------------------------------actgtgagtcgatgaaacctattttcctcataaattacccactctcaggtggttatttatagcagtctgaaaacagtcta----atataCAtatggacatatattttctttcctttggggtaaatacctataatagaactgGAATCTTATCAATGTCTGGGAATATTTGAAAAAAAAA-AAAA-----ACtggaatgactgtaccatatggtacatgt---ttaacttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16851869 1052 - 220367699 GATCTACTTTCAGTTTCTAGACATTAGTGTGGatttcctagaattttatataaaaggaaacaCGTCTTACAGTCGGTCCTCTTTTgtgtgacttctttcacttagcgtaatgatTTTGAGATGTAATCTTGTCATTGcctgtatcaatagttcatttatttatatttctgcatAATGGT-------CCAGATATACCACAGTTGGCCGATCCATTCATCtcctgatggacatttgtgttgtgcCCAGTTTGGGGATGTTACAGACAAAAGTACTAAAGGttaagcatccctaatctgaaaattcaaaatccgAGATGCTCCAAATCTGAAACTTTGTGAGCACCAAATGACAtcacaagtagaaaattccacctctgacctcatgtgacaggtcacagtaaaaactttgttttgtgtacaaaattatcaaaaatattgcCTAAGATGATCTTCAGGCTATgtatataaggtatatatgaaacata----aatttaatgtttACATTGGGTCCTATTTCCAAGATATGTCATTAGATATATGCAAATACTCCAAA---------------------CTCTGGTTCcaggcatttcagataagggatcttcagcctgggtgagcaTGCATGCACAAGTCTGTGTGTGGttacatggtttggctctgtcctcGCCCAGATTtgatgttgaattgtaattcccaatgttgagggagggacctgctgggaggtgattagatcacggggatggatttcccccatgctgttctcatcatagtgagtTATGAGAGCCAATGGTTTAagagtgtgtggcacttccccccttGCTCGCTgactc----tcctgctctgccatgggaAGATG---TGTCTTCCTtc--------------------------------------------------------------------actgtgagtcaatgaaacctatTTTCCTCATAAATTATCCActctcaggtagttatttatagcagtctGAAAACAGTCTA----ATATACATatggacatatattttctttcctttggggtAAATACCTATAATAGAACTGGAATCATATCAATGTCTgggaatatttg--gaaaaaa-aaaa-----actggaatgaCTGTACCATATGgtacatgt---ttaacttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82651317 1064 + 85787240 gatctactttcagtttctagacattagtgtggatttcctagaattttatataaaaggaaacatgtcttgcagtcggtactcttttgtgtgacttctttaacttagcgtaatgattttgagatgtaatcttgtcattgcctgtatcaacagttcatttatttatatttctgcataatggt-------ccagatataccacagttggccgatccattcatctcctgatggacatttgtgttgttcccagtttgggcatgttacagacaaaagtactaaaggttgagcatccctgatctgaaaattcaaaatccgggatgctccaaatttgacactttgtgagcaccaaatgacatcacaagtagaaaattccacctctgacctcatgtgacaggtcacagtaaaaactttgttttgtgtacaaaattatcataactattgtctaagatgatcttcaggctatatatataaggtatatatgaaacataaatgaatttaatgtttacattgggtcctatttccaagatatgtcattagatatatgcaaatactccaaact-------------------ctctggttccaagcatttcagataaggggtcttcagcctgggtgagcatacatgcacaagtctttgtgtggTTACGtggtttggctctgtcctcacctggatgtcatgttgaattgtaattcccaatgttgagggagggacctgctgggaggtgattagatcacggggatggatttcccccatgctgttctcatcatagtgagttatgagagccaatggtttaagagtgtgtggcac-tccccccttgctcgctgactc----tcctgctctgccatgggaagatg---tgtcttccttc--------------------------------------------------------------------actgtgagtcaatgaaacctattttcctcataaattacccactctcaggtagttatttatagcagtctgaaaacagtctaatataTATAtatatggacatatattttctttcctttggggtaaatacctataatagaactgGAATCTTATCAATGTCTGGGAATATTTGAAAACAAAATAAAA-----ACtggaatggctgtaccatatagtacatgt---ttaacttttg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14364453 1095 - 49578535 gatttgcctgtagtttctagacattatcgtggaccgcctagaatttcatgtggaaggaagcacgtcatccagtccgtactctctggtgtggcttctatcacctagcataaccattttgcgatttaatcatttca-----tggatcagtagttcatttctgtatatttctgtgtaatggtccattgtccagatataccacagtttgcctgtccattcacctgttgatggacattcgtgttgttacccg-gtgggaatatcgcagataaaagtactaaaggttgagcatctctaatctgaaaattcgaaatccaagaggctccaaatctgaaac--tgtgagcaccagatgacatcac--gtggaaaatcccacctctgacctcatgaagcaggtcacagtaaaaactgtgttttgtgtacaaaatcaatcaaaatattgtataagattatc-tcgggctatgtatgtaaggtatatatgaaacataagtgaatttcatgtttatattgggtcctattcccaagatatgtcattagacatacgcaaatactccagaatctgaaatctgaataggaacttgtggttccaagcatttcagataagggatattcagcctgTATGAACATAca-------------------------------------------cccaaatttcatgttgaattgtaattcccagtgtt-agggaaggacctggtggtaggt-attggatcatgaggacggatttcccccatgctgttctca------tgagttatgagatctca-aattcaagagtgtgtgtcacctccccccttgctcgc--gctctgtctcctgctctgccatgggaagatg---tgccttatttccctttgcttctgcggtgactgtaagttttctgaggcctccccgtcattgtccctgttaagcctgtgggactgtgaatcagttaaacctattttcttcataaattacccagtctcaggtagttctttataacagtatgaaaacagacta------atataCAtggacatatgtgttcattcctttggggtaaatacctatgatagaactgGAATCTTATCACTATCTGGGAATATTTAGAAGAAAAA-AAAC----TACtggaatggctgaaccatatagtagatgtatgtttacttttt i calJac3.chr19 C 0 I 17487 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I a score=1358234.000000 s hg38.chr1_KI270759v1_alt 318645 573 + 425601 aagaaatttctcagctgtttcccaaagtgcttgtactattttatatggggagttcccgttcctccatacccccaccagcatttggtgtggtcagtcttttaagttttgcctgtttacatagtaggtttgtaatagtgtc---ttgtggttttagtttgcacttcgctaatgaccaatgatgccaagcatccttctacacgcccattcggcatccatacctcttctttggtgaaatgtcccttcaaatcttctgtccttttaaaaattgttttgaaagtttttaatatattctggatgcaaatcctttataagatatagtatttgcaaatattttctctcagtctgtggcttctctcttcattctcaacagcatcttttgaaaaacaaatacttgtttttttatgaagtccaatttatatgttcttttatgaatcatgtttttgctgtcacatctaagaaatctttgcctaacccaaggccaaaaaggtttcttcttatgcctcctctagaagttttgtaattttaggcttcaaatttaggtctttgatcaa----tttttagttaatttttgtatatttt s panTro4.chr1 225074329 573 + 228333871 aagaaatgtctcagctgtttcccaaagtgcttgtactattttatatggggagttcccgttcctccatacccctaccagcatttggtgtggtcagtcttttaagttttgcctgtttacgtagtaggtttgtaatagtgtc---ttgtggttttagtttgcacttcgctaatgaccaatgatgccaagcatccttccacacgcccattcggcatccatacctcttctttggtgaaatgtcccttcaaatcttctgtccttttaaaaactgttttgaaagtttttaatatattctggatgcaaatcctttataagatatagtatttgcaaatattttctctcagtctgtggcttctgtcttcattctcaaccgcatcttttgaaaaacaaatacttgtttttttatgaagtccaatttatatgttcttttatgaatcatgtttttgctgtcacatctaagaaatctttgcctaacccaaggccaaaaaggtttcttcttatgcctcctctagaagttttgtaattttaggcttcaaatttaggtcttcgatcaa----tttttagttaatttttgtatatttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226443759 576 - 229942017 aagaaatttctcagctgtttcccaaagtgcttgtactattttatatggggagttcccgttcctccacacccccaccaacatttggtgtggtcagtcttttaagttttgcctgtttacatagtaggtttgtagtagtatcttgttgtggttttagtttgcacttcgctactgactaatgatgccaagcatccttccacacgcccattcggcatccatacctcttctttggtgaaatgtcccttcaaatcttctgtccttttaaaaattgtttttaaagttttcaatatattctggatgcaaatcctttataagatatattatttgcaaatattttctctcagtctgtggcttctctcttcattctcaacagcgtcttttgaaaaacaaatactcattttcttatgaagtccaatttatatattcttttatgaatcaggtttttgctgtcatatctaagaaatctttgcctaacccaaggccaaaaaggtttcttcttatgcctcctctagaagttttataattttaggcttcaaatttaggtctttgatcaa----tttttagttaatttttgtatatttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140327200 580 - 143122389 aagaaatttctcagctgtttcccaaagtgcttgtactattttatgtggggagttcccgttcctccacaccctcaccaacatttggtgtggtcagtcttttaagttttgcctgttcacatagtaggtttgtagtagtatcttgtggtggttgtagtttgcacttcgctaatgaccaatgatgccaagcatcctttcacacgcccattcggcatccatacctcttctttggtgaaatgtcccttcgaatcttctgtccttttaaaaattgttttgaaagtttttaatatattctggatgaaaatcctttataagatatattatttgcaaatgttttctctcagtctgtggcttctctcttcattctcaaccgcgtcttttgaaaaacaaatatttgcttttttatgaagtccaatttatatgttcttttatgaatcatgtttttgctgtcatatctaagaaatctttgcctaacccaaggccaaaaaggtttcttctcatgcctcctctagaagttttgtaattttaggcttcaaatttaggtctttgatcaattctTTTTTTTTTTATTTTtttatttttt i nomLeu3.chr5 C 0 I 8688 s rheMac3.chr1 17038712 575 - 229590362 aagaaatttctcggctgtttcccaaagtgctggtactattttatgtggggagttcctgttcctccacaccctcagcaatatttggtatggtcagtcttttaagttttgcctgtttacatagtaggtttgtagcagtatcttgttgtggttttagtttgcattttgctaataatcaatgatgcggagcatccttccacacgcctgttcggcatccatacctcttctttggtgaaatgtctcttcaaatcttctgtcctttttgaaattgttttgaaagtttttaatgcattctggatgcaaatcctttataagatatattatttgcaaatattttctctcagtctgtggcttctctcttcattctcaacagcgtcttttgaaaaacaaatattca-ttttttatgaagtccaatttatatgttcttttatgaatcatgtttttgctgtcatatctaagaaatctttgccaaacccaaggccaaaaaggtttcttcttatgccttctgtagaagttttgtaattttaggcttcaaatttaggtctttgatcaa----tttttatttaatttttgtatatttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223802508 576 - 227556264 aagaaatttctcggctgtttcccaaagtgctggtactattttatgtggggagttcctgttcctccacaccctcagcaacatttggtatggtcagtcttttaagttttgcctgtttacgtagtaggtttgtagcagtatcttgttgtggttttagtttgcattttgctaataatcaatgatgcggagcatccttccacacgcctgttcggcatccatacctcttctttggtgaaatgtctcttcaaatcttctgtcctttttgaaattgttttgaaagtttttaatgtattctggatgcaaatcctttataagatatattatttgcaaatattttctctcagtctgtggcttctctcttcattctcaacagcgtcttttgaaaaacaaatattcatttttttatgaagtccaatttatatgttcttttatgaatcatgtttttgctgtcatatctaagaaatctttgccaaacccaaggccaaaaaggtttcttcttatgccttctgtagaagttttgtaattttaggcttcaaatttaggtctttgatcaa----tttttatttaatttttgtatatttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16852921 576 - 220367699 aagaaatttctcagctgtttcccaaagtgctggtactatTTTATGTGGAGAGTTCCTGTTCCTCCACGCCCCCAGCAACATTTGGTATGATCAGTCTTTTAAGTTTTGCCTGTTTACATAGTAGGTTTGTAGCagtatcttgttgtggttttagtttgcattttgcTAATGACCAATGATGCCGAGCATCCTTCCACACGCCTGTTCGGCATCCATAcctcttctttggtgaaatgtctcttcaaatCTTCTGTcctttttgaaattgttttgaaagtttttaatgTATTCTGGATGCAAATCCTTTAtaagatatattatttgcaaatattttctctcagtctgtggcttcTCTCTTCATTCTCGACAGcgtcttttgaaaaacaaatattcatttttttatgaagtccaatttatatGTTCTTTTATGAATCATGTTTTTgctgtcatatttaagaaatctttgccaaaccCAAGGCCAAAAAGGTTTCTTCTTATGCCTTCTCTagaagttttgtaattttaggcttcaaatttaggtctttgatcaa----tttttatttaatttttgtatatttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82652381 568 + 85787240 aagaaatttctcagctgttccccagagtgctggtactattttatatggggagttcccgttcctccacacccccagcaacatttggtatggtcagtcttttacgttttgcctgtttacgtagtaggtttgtagtagtatcttgttgtggttttagtttgcaatttgctaatgaccaatgatgcggagcatccttccacacgcctgttcggcatccatacctcttctttggtgaaatgtctcttcaaatcttctgtcctttttgaaattgttttgag------caatgtattctggatgcaaatcctttataagatatattatttgtaaatattttctctcagtctgtgacttctctcttca-tctcaacagcgtcttttgaaaaacaaat-ttcatttttttatgaagtctaatttatatgtttttttatgaatcatgtttttgctgttatatctaagacatctttgccaaacccaaggccaaaaaggtttcttcttatgccttctctagaagttttgtaattttaggcttcaaatttaggtctttgatcaa----tttttatttaatttttgtgtatttt i chlSab2.chr25 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I a score=2765965.000000 s hg38.chr1_KI270759v1_alt 319218 1677 + 425601 gcaatgtatggactcaagtag----ttttttt----caggttgagggaggttaggtgttttttt-gtgtgtgtgtatgaatatagtatccaaaatttccagtatcatttgttgtaaaaagctattatttctctactaaattacctttgtcaaggattagttggccatatttatgtgcaactatttctagactctgttctgttccattgatctatttgtctatctttacaccaataccacactgttttgattatggtggatg-------------tataataggtcttgaaattaggtaatgttaaccttccaactttgttcttattttttaaagttgttttggctattcagtgtatttggcatttccatacaaattttagagtcgctttctaaatggattacgtagaaaaaatttctatcaaagaagtctaccaggattctgattgggattgcattgaagctatag--caacttggagatgattgacctcttcacagtattgagtgttctgacccaggagcacagtatctctctctagtttaggtttttattagttcccttcagtaattttttAAAGTAGGAAAAAGCTATTATTTAAACATGTAtttcttttatattgatatataattacacatatttatgggtgatattttgatgcacgcatacaatgtgtgatgatcaatcagggaatttaggagattcatcacctcagttatcacttatttgtgttgggaacatttcattattttcttctagctatttgaaaatatacaataaattattgttaactatagcctcctactgtgctatcaaacactacggcttcctccttttatttaactgtgtatttgtaactgttaacccacctgttttatccccctccccc-ggcaccccacatcccg-ccccttcccacacacacacattcttcccagcctctggtatctaccattctcctctctacctgcatgagatcaactttttaagctcccacatatgagtgagaacatgcaatatttgtctttctgtgcctggcttatttgacttaacataatgacatccagttccatccattttgctacaaatgacaggatttgagtttttgtataactactagtattccattgtgtatatagagcacattttgctacaaatgacaggatttgagtttttgtataactgctagtattccattgtgtata-------------------------------------------------------------------cagagcacattttcttg-gtcccgttccattcatccatccattgttggacacttaggttgattctgtatcttggctgttgcgaatagagctgtgataaatataggggtacaggtatc----cctttgatatactgatttctgttcctttggacaaacacccagtagtgggattgctagatcatatggtagttctcgttttagtttttttttgagaagcatctatactgttttctatactggctgtactaatttacattcccaccaacagtgtgtaagagttccctttactatgcatcttcactagatttcatggtggg-ttt-----tt--------------tt-----------------------tttctgtctttctaataatagccattctgactggggtgaaattatatctcattgtggttttgatttgcacatccctgatgattagggacattgaaca-ttttttcacatacctggttgccatgtgtatgacttcttttgagaaatgtctattcagatcctttgcccaatttttaatgggtttg s panTro4.chr1 225074902 1748 + 228333871 gcagtgtatggactcaagtag----ttttttt----cagggggagggaggttaggtgttttttttgtgtgtgtgtatgaatatagtatccaaaatttccagtatcatttgttgtaaaaagctattatttctctactaaattacctttgtcaaggattagttggccatatttatgtgcaactatttctagactctgttctgttccattgatctatttgtctgtctttacaccaataccacactgttttgattatggtggatg-------------tataataggtcttgaaattaggtaatgttaaccttccaactttgttcttattttttaaagttgttttggctattcagtgtatttggcatttccatacaaattttagagtcgctttctaaatggattacgtagaaaaaatttctatcaaagaagtctaccaggattctgattgggattgcactgaagctatag--caacttggagatgattgacctcttcacagtattgagtgttctgacccaggagcacagtatctctctctagtttaggtttttattagttcccttcagtaattttttAAAGTAGGAAAGAGCTATTATTTAAAAATGTAtttcttttatattgatatataattacacatatttatgggtgatattttgatgcaagcatacaatgtgtgatgatcaatcagggaatttaggagattcatcacctcagttatcacttctttgtgttgggaacatttcattattttcttctagctatttgaaaatatacaataaattattgttaactatagtctcctactgtgctgtcaaacactaccgcttcctccttttatgtaactgtgtatttgtaactgttaacccacctgttttatccccctccccccggcaccccacgccccg-ccccttcccacacacacacattcttcccagcctctggtatctaccattctactctctacctgcatgagatcaactttttaagctcccacatatgagtgagaacatgcaatatttgtctttttgtgcgtggcttatttgacttaacataatgacatccagttccatccattttgctacaaatgacaggatttgagtttttgtataactactagtattccattgtgtatatagagcacattttgctacaaatgacaggatttgagtttttgtataactgctagtattccattgtgtatatagagcacattttgctacaaatgatagggtttgagtttttgtataactgagtattccattgtgtatacagagcacattttcttg-gtcccgttccattcatccatccattgttggacacttaggttgattctgtatcttggctattgcgaatagagctgtaataaatataggggtacaggtatctatccctttgatatactgatttcttttcctttggacaaacacccagtagtgggattgctagatcatatggtagttctctttttagtttttttttgaggagcatctatactgttttctatactggctgtactaatttacattcccaccaacagtgtataagagttccctttactatgcatcttcactagatttcatggtgg---tt-----tt--------------tt-----------------------tttctgtctttctaataatagccattctgaatggggtgaaattatatctcattgtggttttgatttgcacatccctgatgattagggacattgaaca-ttttttcacatacctggttgccatgtgtatgacttcttttgagaaatgtctattcagatcctttgcccaatttttaatgggattg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226444335 1676 - 229942017 gcaaggtatggactcaagtag----ttttttt----cagggggagggaggttaggtgttttttttgtgtgtgtgtatgaatatagtatccaaaatttccagtatcatttgttgtaaaaagctattatttctctactaaattacctttgtcaaggattagttggccatatttatgtgcatctatttctagactctgttctgttccattgatctatttgtctatctttacaccaataccacactgttttgattacggtggatg-------------tataataggtcttaaaatttggtaatgttaaccttccaactttgttcttattttttaaagttgttttggctattcagtgtatttggcatttccatacaaattttagagttgctttctaaatggattatgtagaaagaatttctatcaaagaagtctaccaggattctgattgggattgcactgaagctatag--caacttggagatgattgacctcttcacagtattgagtgttctgacccagaagcacagtatctctctctagtttaggtttttattagttcccttcagtaattttttAAAGTAGGAAAAAGCAATTATTTAAAACTGTCtttcttttatattgatatataattacacatatttatgggtgatattttgatgcatgcatccaatatgtaatgatcaatcagggaatttagaagattcatcacctcagttatcatttctttgtgttgggaacatttcattattttcttctagctatttgaaaatatacaataaattattgttaactatagtctcctactgtgctatcaaacactaccact---tccttttatgtaactgtgtatttgtaactgttaacccatctctttcatccccctcccct-ggcaccccatgccccg-cccgtccccccacacacatattcttcccagcctctggtatctaccattctactctctacctgcgtgagatcaactttttaagctcccacatgtgagtgagaacatgcaatatttgtctttctgtgcctggcttctttgacttaacataatgacatccagttccatccattttgctacaaatgacaggatttgagtttttgtataactactagtattccattgtgtatatagagcacactttgctacaaataacaggatttgagtttttgtataactgctagtattccattgtgtata-------------------------------------------------------------------tagagcacatttgcttg-gtcctgttccattcatccatccattgttggacacttaggttgattctgtatcttggctattgcgaatagagctgtaataaatatagaggtacaggtatc----cctttgatatactgatttcttttcctttggacaaacacccagtagtgggattgctagatcatatggtagttctatttttcgtttttttttgagaagcatctatactgtttgctatactggctgtactaatttacattcccaccaacagtgtgtaagagttccctttactatgcatcttcactagatttcatggtgggtttt-----tt--------------tt-----------------------tttctgtctttctaataacagccattctgactggggtgaaattatatctcattgtggttttgatttgcacatccctgatgattacggacattgaaca-ttttttcacatacctggttgccatgtgtatgtcttcttttgagaaatgtctattcagatcctttgcccaatttttaatggatttg i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17039287 1635 - 229590362 gcaatgtaagcactcaagtagttttttttttt----gagggggtgggaggttagggtttttttt-------gtatatggatatagtatccaaaatttcccgtatcatttgttgtaaaaaactattatttctctactaaattacctttgtcaagaattagttggtcatatttatgtgcatctatttctagactctgttctgttccattgatctatttgtctgtctttacaccaataccacactgccttgattatggtggatatataataggtctttataataggtcttgaaattaggtaatgttaaccttccaactttgttcttattttttaaagttg-tttggctattcagtttatttggcgtttccatacaaattttagagtcgctttctaaatggatcatgtagaaagaatttctatcaaagaagtctaccgggattctgactgggattgcattgaagctatagatcaacttggagatgattgacctcctcacagtgttgagtactctgacccagaagcacagtatctctctctagtttaggtttttattagttccctccaGTGATTTTTTAAAGTAGGAGAAAGCAATTATTTAAAAATGTAtttcttttttattgatacataattacctgtatttatgggtcatattttgatgcatgcgtagaatgtgtaatgatcaaccagggaatttagaagattcatcacctcagttatcatttctttgtgttggaaacatttcattattttcttctagctatttgaaaatatacaataaattattgttaactatagtctcctactctgctatcaaacactaccacttcctccttttaggtaactgtgtatttgtaactgttaacccacgtctttcatccccctcccct-ggtcccc-----cctg-ccccccacaacacacacacattcttcccagcctctggtatctaccattctactctctacctgcatgagatcaactttttaacctcccacatatgagtgagaacatgcaatatttgtctttctgtgcctgacttatttgacttaacataatgacctccagttccatccattttgctacaaatgacaggatttgatt--------------------------------------------------------------------tttttatataactactagtatttcattgtgtgta-------------------------------------------------------------------tatagcatattttcttgagtcccattccattcatccgtccattgctggacacttaggttgattctgtatcttggctattgtgaatagagctgtaataaatagaggggtacaggtatc----cctttgatatactgatctcttttcctttggacaaacactcagtagtgggattgctagatcatatggtagttctatttttag---ttttttgagaagcttccatactgttttctatactggctgtactaatttacattcccactaacagtgtgtaagagttccctttactatgcatcttcactagatttcatggtgggttttttttgtttgtttgtttgtttgtt-----------------------tttttgtctttctagtaatagccattctaactggggtgaaatgatatctcattgtggttttgatttgcacgtccctgatgagcagggacattgaacatttttttcacatacccgcttgccatgtgtatgtcttcctttgagaaatgtctgttcagatcctttgtccaatttttaatggatttg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223803084 1629 - 227556264 gcaatgtaagcactcaagtag-tttttttttt----gagggggtgggaggttagggtttttttt-------gtatatggatatagtatccaaaatttcccgtatcatttgttgtaaaaaactattatttctctactaaattacctttgtcaagaattagttggtcatatttatgtgcatctatttctagactctgttctgttccattgatctatttgtctgtctttacaccaataccacactgccttgattatggtggatatataataggtctttataataggtcttgaaattaggtaatgttaaccttccaactttgttcttattttttaaagttg-tttggctattcagtttatttggcgtttccatacaaattttagagtcgctttctaaatggatcatgtagaaagaatttctatcaaagaagtctaccaggattctgactgggattgcattgaagctatagatcaacttggagatgattgacctcctcacagtgttgagtactctgacccagaagcacagtatctctctctagtttaggtttttattagttccctccagtaattttttAAAGTAGGAGAAAGCAATTATTTAAAAATGTAtttcttttttattgatacataattacatgtatttatgggtcatattttgatgcatgcgtagaatgtgtaatgatcaaccagggaatttagaagattcatcacctcagttatcatttctttgtgttggaaacatttcattattttcttctagctatttgaaaatatacaataaattattgttaactatagtctcctactctgctatcaaacactaccacttcctccttttaggtaactgtgtatttgtaactgttaacccacgtctttcatccccctcccct-ggtcccc-----cctg-ccccccccaacacacacacattcttcccagcctctggtatctaccattctactctctacctgcatgagatcaactttttaacctcccacatatgagtgagaacatgcaatatttgtctttctgtgcctgacttatttgacttaacataatgacctccagttccatccattttgctacaaatgacaggatttgatt--------------------------------------------------------------------tttttatataactactagtatttcattgtgtgta-------------------------------------------------------------------tatagcatattttcttgagtcccattccattcatccgtccattgctggacacttaggttgattctgtatcttggctattgtgaatagagctgtaataaatagaggggtacaggtatc----cctttgatatactgatctcttttcctttggacaaacactcagtagtgggattgctagatcatatggtagttctatttttag---ttttttgagaagcttccatactgttttctatactggctgtactaatttacattcccactaacagtgtgtaagagttccctttactatgcatcttcactagatttcatggtgggtttt-----tttgtttgtttgtttgtt-----------------------tttttgtctttctagtaatagccattctaactggggtgaaatgatatctcattgtggttttgatttgcacgtccctgatgagcagggacattgaacatttttttcacatacccgcttgccatgtgtatgtcttcctttgagaaatgtctgttcagatcctttgtccaatttttaatggatttg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16853497 1609 - 220367699 gcaatgtaagcactcaagtagtttttttttttttgggggggggtgggaGGTTAGGg-ttttttt-------gcatatgaatatagTATCCAAAATTTCCAGTATCATTTGTTGTAAAAAACTGTTATTTCTCTACTAAATTACCTTTGTCAAGAATTAGTTGGTCATATTTATGTGCATCTATTTctagactctgttctgttccattgatctatttgtctatctttacaccaataccacactgccttgattatggtggata-------------taTAATAGGTCTTGAAATTAGGTAATGTTAaccttccaactttgttcttattttttaaagttg-tttggCTATTCAGTGTATTTGGcgtttccatacaaattttagagtCGCTTTCTAAATGTATTATGTAGAAAGAATTTCTATGAAAGAAGTCTACCAGGATTCTGactgggattgcattgaagctaTAGATCAACTTGGAGATGATTGACCTCTTCACAGTATTGAGTACTCTGACCCAGGAGCACAGCATCTCTCTCTAGTTTAGGTTTTTATTAGTTCccttcagtaattttttaaagtaggagaaagcaattatttaaaaatgta----ttttttattgatacataattacATGTATTTATGGGTCATATTTTGATGCATGcgtagaatgtgtaatgatcaaccAGGGAATTTAGAAGATTCATCACCTcagttatcatttctttgtgttggaaacatttcattattttcttctagctatttgaaaatatacaataaattattgttaactatagtctcctactctgctatcaaacactaCCACTTCCTCCTTTTATGTAACTGTGTATTTGTAACTGTTAGCCCACCTCTTTCATccccctcccct-ggtcccc-----cctgcccccccccaacacacacacattcttcccagcctctggtatctaccattctactctctacctgcatgaaatcaactttttaacctcccacatatgagtgagaacatgcaatatttgtctttctgtgcctgacttatttgacttaacataatgacctccagttccatccattttgctacaaatgacaggatttga-t--------------------------------------------------------------------tttttatataactactagtatttcattgtgtgta-------------------------------------------------------------------tatagCATATTTTCTTGAGTCCcattccattcatccatccgttgctggacacttaggttgattctgtatcttggctattgtgaatagagctgtaATAAATAGAGGGGtacaggtatc----cctttgatatactgatctCTTTTCCTTTGGACAAacactcagtagtgggattgctagatcatatggtagttctatttttag---ttttttgagaagcttccatactgttttctatactggctgtactaatttacattcccaccaacagtgtgtaagagttccctttaCTATGCATCTTCACTAGATTtcatggtgggtttt-----tt------tttttttttt-----------------------tttttgtctttctagtaatagccattctaactggggtgaaatgatatctcattgtggttttgatttgcacgtCCCTGATGAGCAGGgacattgaacatttttttcacataCCCGCttgccatgtgtatgtcttcctttgagaaatgtctgttcagatcctttgtccAA-TTTTAATGGATTTG i papAnu2.chr1 C 0 I 15458 s chlSab2.chr25 82652949 1633 + 85787240 gcaatgtaagcactcaagtag---tttctttt----gggggggtgggaggttaggg-ttttttt-------gcatatgaatatagtatccaaaatttccagtatcatttgttgtgaaaagctattatttctctactaaattacctttgtcaagaattagttggtcatatttatgtgcatctatttctagactctgttctgttccattgatctatttgtctatctttacaccaataccacactgtcttgattatggtggata-------------tataataggtcttgaaattaggtaatgttaaccttccaacttcgttcttattttttaaagtta-ttgggctattcagtgtatttggcatttccatacaaattttagagtcgctttctaaatggattatgtagaattaatttctatcaaagaagtctaccaggattgtgactgggattgcactgaagctatagatcaatttggagatgattgacctcctcacagtattgagtactctgacccaggagcacagcatctctctctagtttaggtttttattagttcccttcagtaattttttAAAGTAGGAGAAAGCAATTATTTAAAAATGTAtttcttttttattgatacataattacacgtatttatgggtcatattttgatgcatgcatagaatgtgtaatgatcaaccagggaatttagaagattcagcacctcagttatcatttctttgtgttggaaacatttcattattttcttctagctatttgaaaatatacaataaattattgttaactatagtctcctactgtgctatcaaacactaccacttcctccttttatgtaactgtgtatttgtaactgttaacccacctctttcatccccctcccgt--gtcccc-----ccta-ccccccac--cccccacacattcttcccagcctctggtatctaccattctgctctctacctgcatgagatcaactttttaacctcccacatatgagtgagaacatgcaatatttgtctttctgtgcctgacttatttgacttaacataatgacctccagttccatccattttgctacaaatgacagggtttgatt--------------------------------------------------------------------tttttagataactactagtactccattgtgtgta-------------------------------------------------------------------tacagcacattttcttgagtcccgttccattcatccgtccgttgctggacacttaggttgattctgtatcttggctattgtgaatagagctgtaataaatagaggggtacaggtatc----cctttgatatactgatctcttttcctttggacaaacactcagtagtggaattgctagatcatatggtggttctatttttag---ttttttgacaagcttccatactgttttctatactggctgtactaatttatattcccaccaacagtgtgtaagagttccctttactatgcatcttcactagatttcatggtgggtttt-----tttttttcttttttttttctctttctttctttctttctttctttctttctttctagtaatagccattctgactggggtgaaatgatatctcattgtggttttgatttgcacgtccctgatgattagggacattgaacttttttttcacatacccgcttgccatgtgtatgtcttcctttgagaaatgtctgttcagatcctttgtccaatttctaatggatttg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e nomLeu3.chr5 140327780 8688 - 143122389 I a score=488067.000000 s hg38.chr1_KI270759v1_alt 320895 379 + 425601 tttgggttttttgctgttttgagttccctggatattaattccttgttgaatgaacagcttgcaaatat-tttttttccattctgcaggttgtctctttgctctgttgattgtttccttagctgtgcagaacgtttttagtttaacatactccaatctttctaattttggttttcttacttgtgctttcaaagtcttagccataaaatctttgcctggaccaatgtcccaaagcatttcccctatgttttcatctggtagagttattgtttttggtcttaatatttaagcctttaataaattttgagtggatttttatatatggtaagag-atagcggtctagtttcacccttctgcttatggatatctagttttcccagca s panTro4.chr1 225076650 380 + 228333871 tttgggttttttgctgttttgagttccctggatattaattccttgttgaatgaacagcttgcaaatatatttttttccattctgcaggttgtctctttgctctgttgattgtttccttagctgtgcagaacgtttttagtttaacatactccaatctttctaattttggttttcttacttgtgctttcaaagtcttagccataaaatctttgcctggaccaatgtcccaaagcatttcccctgtgttttcatctggtagagttattgtttttggtcttaatatttaagcctttaatcaattttgagtggatttttatatatggtaagag-atagcggtctagtttcatccttctgcttatggatatctagttttcccagca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226446011 379 - 229942017 tttgggttttttgctgttttgagttccctggatattaattccttgttgaatgaacagcttgcaaatat-tttttttccattctgcagg-tgtctcttcgctctgttgattgtttccttagctgtgcagaacgtttttagtttaacatactccaatctttctaattttggttttcttacttgtgctttcaaagtcttagccataaaatctttgcctggaccagtgtcccaaagcatttcccttatgttttcatctggtagatttaatgtttttggccttaatatttgagcctttaatcaattttgagtggatttttatatatggtaagagaatagctgtctagtttcatccttctgcttatggatatctagtttccccagca i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17040922 377 - 229590362 tttggggtttttgccgttttgagttccctggatattaattccttgttgaatgaacagtttgcaaatat-tttttttccattctgcaggttgtctcttcactctgttgaatgtttccttagctgtacagaacgattttagtttaacatactccaatctttctaatgttggttttcttacttgtgcttttgaagtcttagccataaaatctttgcctggaccaatgtcccaaagcctttcccctgtgttttcatctggtagatttattgtttttggtcttaatatttaagcctttaatcaatttggagtggatttttatatatggtaagag-agagcggtctagtttcatccttctacctatggatatctag--ttcccagca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223804713 377 - 227556264 tttgggttttttgctgttttgagttccctggatattaattccttgttgaatgaacaatttgcaaatat-tttttttccattctgcaggttgtctcttcactctgttgaatgtttccttagctgtacagaacgattttagtttaacatactccaatctttctaatgttggttttcttacttgtgcttttgaagtcttagccataaaatctttgcctggaccaatgtcccaaagcctttcccctgtgttttcatctggtagatttattgtttttggtcttaatatttaagcctttaatcaatttggagtggatttttatatatggtaagag-agagcggtctagtttcatccttctacctatggatatctag--ttcccagca i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82654582 378 + 85787240 tttgggttttttgctgttttgagttccctggatattaattccttgttgaatgaacagtttgcaaatat-tttttttccattctgcaggttgtctcttcgctctgttgaatgtttccttagctgtacagaacgattttagtttaacatactccaatctttctaatgttggttttcttacttgtgcttttgaagtcttagccataaaatctttgcttggaccaatgtcccaaagcctttcccctatgttttcatctggtagatttattgtttttggtcttaatatttaagcctttaatcaatttggagtggatttttatatatggtaagag-agagcggtctagtttcatccttctgcccatggatatctag-tttcccagca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e papAnu2.chr1 16855106 15458 - 220367699 I e nomLeu3.chr5 140327780 8688 - 143122389 I a score=923822.000000 s hg38.chr1_KI270759v1_alt 321274 534 + 425601 ccatttattaaaggggatgtccttt-ccccaatgcatgttcttggtgcctttgtcaaaaatgagttggctgtaaatagatagatttatctgtaggttctctattgtgtcccattggtctatgtgtctttttacgtcaataccagcctgttttatgttacagtagcttcctagtagtgtattttgaagtcagctagtgtgatgcctccagcttgtttc--------------tttgttttccagtattgctttgtgtgcaag------------------gtttttc--tctgtgtgttta-------------------------------aattccatgaagaatgtcatggatatttcgacagagactgcattgagtctgtagattgctttgagtaggatggtcattttaacaatgttaacttgaactcaggattcagaaactcactcaaaaccacacaactacatggaaattgaacaacctgctc------------------------ctgaatgagtcctgggtaaataacaaaattaagggagaaatcaatgagaacaaaaagacgatgtaccagaagctctgggacaccgctaaagcagtgttagagggaaatttat s panTro4.chr1 225077030 534 + 228333871 ccatttattaaaggggatgtccttt-ccccaatgcatgttcttggtgcctttgtcaaaaatgagttggctgtaaatagatagatttatctgtaggttctctattgtgtcccattggtgtatgtgtctttttatgtcaataccagcctgttttatgttacagtagcttcctagtagtgtattttgaagtcagctagtgtgatgcctccagcttgtttc--------------tttgttttccagtattgctttgtgtgcaag------------------gtttttc--tgtgtgtgttta-------------------------------aattccatgaagaatgtcatggatatttcgatagagactgcattgagtctgtacattgctttgagtaggatggtcattttaacaatgttaactTgaactcaggattcagaaactcactcaaaaccacacaactacatggaaattgaacaacctgctc------------------------ctgaatgagtcctgggtaaataacaaaattaagggagaaatcaataagaacaaaaagacgatgtaccagaagctctgggacaccactaaagcagtgttagagggaaatttat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226446390 537 - 229942017 ccatttattaaaggggatatcctttcccccaatgcatgttcttggtgcctttgtcaaaaatgagttggctgtaaatagatagatttatctgtaggttctctattgtgtcccatttgtctatgtgtctttttatgtcaataccagcctgttttatgttatggtagcttcctagtagtgtattttgaaatcagctagtgtgatgcctccagcttggttc--------------ttttttttccagtattgttttgtgtgcaag------------------gtttttttgtgtgtgtgttta-------------------------------aattccatgaagaatatcatggatattttgatagagactgcactgagtctgtagattgctttgagtaggatggtcattttaacaatgttaactcgaactcaggattaagaaactcactcaaaaccacacaactacatggaaattgaacaacctgctc------------------------ctgaatgagtcctgggtaaataacaaaattaagggagaaatcaatgagaacaaagggacaacatacgagaatctctgggacaccgctaaagcagtgttagagggaaatttat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140336468 534 - 143122389 ccatttattaaaggggatgtccttt-ccccagtgcatgttcttggtgcctttgtcaaaaatgagttagctgtaaatagatagatttatctgtaggttctctattgtgtcccatttgtctatgtgtctttttatgtcaataccagcctgttttatgttacggtagcttcctagtagtgtattttgaaatcagctagtgtgatgcctccagcttggttc--------------ttttttttccagtattgctttgtgtgcaag------------------gtttttt--tgtgtgtgttta-------------------------------aattccgtgaagaatgtcgtggatattttgatagagactgcattgagtctgtagattgctttgagtaggatggtcattttaacaatgttaactcGAACTCAGGATTAAGAAACTCACTCAaaaccacacaactacatgcaaattgaacaacctgctc------------------------ctgaatgagtcctgggtacataacaaaattaagggagaaatcaatgagaacaaagagacaacgtaccagaatctctgggacaccgctaaagcagtgttagagggaaatttat i nomLeu3.chr5 I 8688 C 0 s rheMac3.chr1 17041299 572 - 229590362 ccatttattaaagggggtgtccttt-ccccaatgcatgttcttggtgactttgtcaaaaatgagttggctgtaaatagatagatttatctgtaggttctctattgtgtcccattggtctatgtgtctttttatgtcaataccagcctgttttatgttaccgtagcttcctagtagtatattttgaagtcagctagtgtgatgcctccagcttggttc---ttttttttttttttttttttcagtattgctttgtctgcaag------------------gtttttt--tgtgtgtgtgtggttccataaggattttagggttgtttttcctatttctgtgaagaatgtcat--ata--tagttagagactgcattgaatctgtagattgctttgagtaggatggtcgttttaacaatattaactcgaactcaggattaagaaactcgctcaaaaccacacaactacatggaaattgaacaacctgctt------------------------ctgaatgagtcctgggtaaataacaaaattaagggagaaatcaatgagaacaaagagacaacgtaccagaatctctgggacacagctaaggcagtgttagagagaaatttat i rheMac3.chr1 C 0 I 4163 s macFas5.chr1 223805090 575 - 227556264 ccatttattaaagggggtgtccttt-ccccaatgcatgttcttggtgactttgtcaaaaatgagttggctgtaaatagatagatttatctgtaggttctctattgtgtcccattggtctatgtgtctttttatgtcaataccagcctgttttatgttactgtagcttcctagtagtatattttgaagtcagctagtgtgatgcctccagcttggttctttttttttttttttttttttttcagtattgctttgtctgcaag------------------gtttttt--tgtgtgtgtgtggttccataaggattttagggttgtttttcctatttctgtgaagaatgtcat--ata--tagttagagactgcattgaatctgtagattgctttgagtaggatggtcgttttaacaatattaactcgaactcaggattaagaaactcgctcaaaaccacacaactacatggaaattgaacaacctgctt------------------------ctgaatgagtcctgggtaaataacaaaattaagggagaaatcaatgagaacaaagagacaacgtaccagaatctctgggacacagctaaggcagtgttagagagaaatttat i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82654960 617 + 85787240 ccatttattaaagggggtgtccttt-ctccaatgcatgttcttggtgcctttgtcaaaaatgagctggctgtaaatagatagatttatctgtaggttctctattgtgtcccattggtctatgtgtctttttatgtcaataccagcctgttttatgttatggtagcttcctagtagtatattttgaagtcagctagtgtgatgcctccagcttggttc--ttttttttttttttttttttccagtattgctttgtctgcaaggtgtgtgtgtgtgtgtgtgtgtgtg--tgtgtgtgtgtggttccataaggatgttagggttgtttttcccatttctgtgaagaatgtcat--acattttgatagagactgcattgaatctgtagattgctttgagtaggatggtcgttttaacaatattaattcaaactcaggattaagaaactcgctcaaaaccacacaactacatggaaattgaacaacctgctccaaattgaacaactcattgaacaactgaatgagtcctgggtaaataacaaaattaagggagaaatcaatgagaacaaagagacaacataccagaatctttgggacacagctaaggcagtgttagagggaactttat i chlSab2.chr25 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=5039738.000000 s hg38.chr1_KI270759v1_alt 321808 4015 + 425601 agcactaaacgcccacatcagagagctggaaagatctcagatcgacaccttaacatcacaattaaaagaactagagaagcaagagcaaacaaatccaaaagctagcagaagacaataaa----taagatcagagcagaactgaaggagttggagatgcgaaaaacccttcaaaatatcaatgaatccaggagccag-ttttttgaaaaaaaaa----attaaggaaatagac---cacttcactagactaataaagaagaaaaggagaagaatcaaacagacacaatagaaaatgataaaggggatatcacccctgatcccacagaaatacaaactaccatcagagaatac-tataaacacctctgtgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacaccctcccaagactaaaccaggaagaagtcaaatccctgaatagaccaataacgagttctgaaattgaggcagtaattaatagcctaccaaccaaaaaaagtccaggaccagatggattcacagccgcattctaccagaggtacgacgaggagctagtaccattccttctgaaactattccaaacaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaaacctggcagagacacaacaagaaaaaggaaacttggccgggcacggtggctcacagtggctcatgcccataaccccagcacttaggggagccaag-caggtggatcacttgaggtcaggagttcgagaccagcct-gccaacatggcaaaaccctgtctctactaaaattacaaaaa-tagatgggcatggtggcgggtgcctgtaatcccagctaatcgggaggctgaggcaggagaatcacttgaacctgggaggcagagattgcagttagccaagatgaagtcagcttcatccctggttcaacatgcaaatcaataaacataatccatcacataaacagaaccaatgacaaaaaccacatgattatctcaatagatgcagaaaaggccttcaataaaattcaacacccttcatgcctcaataaactaggtattgatggaacgtttctcaaaataataagagctatttatgacaaacccatagccaatatcat----aatgggcaaaagctggaagcattccctttgaaaaccagcacaagacaaggatgccctctctcagcactcctattcaacatagtgttagaagttctggccagggcaatcagacaagaggaagaaataaagcatattcaaataggaagagaggaagtcaacttgtctctgtttgcagttgacctgattctatatttagaaaactatatcattggagcccaaaaacttcttgaactgataagcaacttcagcaaattctcaggatacaaaatca--atgcaaaaatcacaagcattcctatacaccaacaacagacaaacagagagccaaatcatgaatgaactcccattcaccatcgctacaaagagaataaaatacccaggaataccttacaaggaatgcgaaggaccccttcaaggagaactacaaacaactgctcaaggaaataagagaggacacaaacaaatggaaaaacatctcatcctcatggataggaagaatcaatatcgtgaaaatggccatactg-ccaaaataatttatagatccagtgctattcccatcaaactacactgacagtcttcacagaattagaaaaagctactttaaatttcatatgaaaccaaaaaagagcccatatagcaaagacaatcctaatcaaaaagaacaaagctgggaggcatcacgctacctgacttcaaactatactacaaggctacagtaaccaaaacaacatggtactggtaccaaaacagacatatagaccaatggaacagaacagagacctcagaaataacactacacatctacaacaatctgatcttcgacaaacctgacaaaaacaagcaatggagaaagaactccctatttaataaatggtactgggaaaa---gctagccgtatgcagaaaactaaaactggaccccttccttacaccttata-aaaaaattaactcaagatggattaaagacttaaatgtaaaacccaaaaccataaaaaccctagaagaaaacctaggcactaccagccaggacataggcagaggcaaagacttcatgaagaaaacaccaaaagcaattgccaacaaaagccacaattgacaaatgggatctaattaagttaaagagctcctgcacagcaaaagaaactagcatcagagtgaacagacaacctacaaaacgggagaaagtttttgcaatctatccatctgacaagggtctaatatccagaatctacaaggaacctaaatttacaagaaaaa--------------caaacatcaaaaagtgggcaaaggatatggagagacacttctcaaaagaagacatttatgtggccaacaaacatgaaagaaagctcaacat----cactgatcattagagaaatgcaaatcaaaatgacaatgtgataccatctcatgccagtcagaatggtg--attattaaaaagtcaagaaacaatagatggtggcaaggctgtggagaaatagaaacgctttcacattgttggtgggaatgtaaattagttcaacttctgtggaagacagtgtggtgattcttcaaggatctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctactacaaagacacatgcacacatatatttattgcagcactatttacaatagcagagacatggaaccaacccaaatgtccatca-----atgatagactgcatgaagaaaatgtaatacatatgcaccatggaatactatgcagccataaaaaagaatgagatcatgtcctttgcagggacatggatgaagctggaagccgtcatcctcagcaaactaacacaggaacagaaaaccaaacaccacacgttgtcactcataagcgggagttgaacaatgagaacacatggacacaaggaggggaacaacacacaccagggcctgtcagggggttgagggaaaggggagtgagagcattaggacaaatacctaatgcatgtggggcttaaaacctagatgacagtttgatgggtacagcaagccaccatagtacatggataactatataacaaaactgcaggttctgcacatgtatcccagaacttgaag-taaata-aata--aata--aaTAaataatattaactcttctgatccatgagcatgggatgtcttttcatttttttctatgttcttcaattttttt-atcagtattttgaagtttttgttatagaggtatttcacctccttacatttattcctaggtattttttagtagctacagtagatggggtagctttcttggtttctttttcaactatttgttgctggtgtgtagaaacactactgatttttgtatccagccacattaccaaatttatcagttctcagag-tttttggtggaatctttaggttgttctaattattatatgccatctgcagagaggaacaatttgactttcgcttttccagtttggatgccttttatttctttctcttgcctaattgctctagctaggacttccagtactatgttgaataacagtggtggaagtgggcatccttgtcttgttccagttcttag--aaaaaaaa-ggcttttagcttttccccacttattatgatgttagctgtgggtttgtcatatatgacctttgctatgctgaggcatgttttttctatgcctaacttattgagagtttttatcatgaaggatgttagattttatcaaatatttttcctgtgtctattgagatgatcttgttgttttagtctctcatatgttgatgtgatgtgcacgtttattgatttgcatacatcgaaccatcattgcatccctaggataaatcccacttgattatggtgtattatgttattggtgtgttgttagatttg s panTro4.chr1 225077564 4013 + 228333871 agcactaaatgcccacatcagagagctggaaagatctcagatcgacaccttaacatcacaattaaaagaactagagaagcaagagcaaacaaatccaaaagctagcagaagacaataaa----taagatcagagcagaactgaaggagttggagatgcgaaaaacccttcaaaatatcaatgaatccaggagccag-ttttttgaaaaaaaaa-----ttaagaaaatagac---cacttcactagactaataaagaagaaaaggagaagaatcaaacagacacaatagaaaatgataaaggggatatcacccctgatcccacagaaatacaaactaccatcagagaatac-tataaacacctctgtgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacaccctcccaagactaaaccaggaagaagtcaaatccctgaatagaccaataacaagttctgaaattgaggcagtaattaatagcctaccaaccaaaaaaagtccaggaccagatggattcacagccgcattctaccagaggtacaacgaggagctggtaccattccttctgaaactattccaaacaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaaacctggcagagacacaacaagaaaaaggaaactcggcccggcacggtggctcacagtggctcatgcccataaccccagcacttagggaagccaaggcaggtggatcacttgaggtcaggagttcgagaccagcct-gccaacatggcaaaaccctgtctctactaaaattacaaaaa-tagatgggcatggtggcgggtgcctgtaatcccagctaatcgggaggctgaggcaggagaatcacttgaacctgggaggcagagattgcagttagccaagatgaagtcagcttcatccctggttcaacatgcaaatcaataaacataatccatcacataaacagaaccaatgacaaaaaccacatgattatctcaatagatgcagaaaaggccttcaataaaattcaacacccttaatgcctcaataaactaggtattgatggaacgtttctcaaaataataagagttatttatgacaaacccatagccaatatcat----aatgggcaaaagctggaagcattccctttgaaaaccagcacaagacaaggatgacctctctcggcactcctattcaacatagtgttagaagttctggccagggcaataagacaagaggaagaaataaagcgtattcaaataggaagagaggaagtcaaattgtctctgtttgcagttgacctgattctatatttagaaaactacatcattggagcccaaaaacttcttgaactgataagcaacttcagcaaattctcaggatacaaaatca--atgcaaaaatcacaagcattcctatacaccaacaacagacaaacagagagccaaatcatgaatgaactcccattcaccatcgctacaaagagaataaaatacccaggaataccttacaaggaatgcgaaggacctcttcaaggagaactacaaacaactgctcaaggaaataagagaggacacaaacaaatggaaaaacatctcatcctcatggataggaagaatcaatatcgtgaaaatggccatactg-ccaaaataacttatagatccagtgctattcccatcaaactacactgacagtcttcacagaattagaaaaagctactttaaatttcatatgaaaccaaaaaagagcccatatagcaaagacaatcctaatcaaaaagaacaaagctgg-aggcatcacgctacctgacttcaaactatactacaaggctacagtaaccaaaacaacatggtactggtaccaaaacagacatatagaccaatggaacagaacagagacctcagaaataacactacacatctacaacaatctgatcttcgacaaacctgacaaaaacaagcaatggagaaagaactccctgtttaataaatggtactgggaaaa---gctagccatatgcagaaaactaaaactggaccccttccttacaccttata-aaaaa-ttaactcaagatggattaaagacttgaatgtaaaacccaaaaccataaaaaccctagaagaaaacctaggcactaccagccaggacataggcagaggcaaagacttcatgaagaaaacaccaaaagcaattgccaacaaaagccacaattgacaaatgggatctaattaagttaaagagctcctgcacagcaaaagaaactagcatcagagtgaacagacaacctacaaaatgggagatagtttttgcagtctatccatctgacaaaggtctaatatccagaatctacaaggaacctaaatttacaagaaaaaaaa-----------caaacatcaaaaagtgggcaaaggatatggagagacacttctcaaaagaagacatttatgtggccaacaaacatgaaagaaagctcaacat----cactgatcattagagaaatgcaaatcaaaatgacaatgtgataccatctcatgccagtcagaatggtg--attattaaaaagtcaagaaacaatagatggtggcaaggctgtggagaaatagaaacgctttcacattgttggtgggagtgtaaattagttcaacttttgtggaagacagtgtggtgattcttcaaggatctagaaccagaaatgccatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctactataaagacacctgcacacatatatttattgcagcactatttacaatagcagagacatggaaccaacccaaatgtccatca-----atgatagactgcataaagaaaatgtaatacatatgcaccatggaatactatgcagccatagaaaagaatgagatcatgtcctgtgcagggacatggatgaagctggaagccgtcatcctcagcaaactaacacaggaacagaacaccaaacaccacacgttgtcactcataagcgggagttgaacaatgagaacacatggacacaaggaggggaacaacacacatcagggcctgtcagggggttgagggaaaggggagtgagagcattaggacaaatacctaatgcatgtggggcttaaaacctagatgacaggttgatgggtacagcaaaccaccatagtacatgtataactatataacaaaactgcaggttctgcacatgtatcccagaacttaaag-taaaaa-aata--aata--aataa----tattaactcttctgatccatgagcatgggatgtcttttcatttttttctatgttcttcaattttttt-atcagtattttgaagtttttgttatagaggtatttcacctccttacatttattcctaggtattttttagtagctacagtagatggggtagctttcttggtttctttttcaactatttgttgctggtgtgtagaaacactactgatttttgtatccagccacattaccaaatttatcagttctcagag-tttttggtggaatctttaggttgttctaattattatacgccatctgcagagaggaacaatttgactttctcttttccagtttggatgccttttatttctttctcttgcctaattgctctagctaggacttccagtactatgttgaataacagtggtggaagtgggcatccttgtcttgttccagttcttag--aaaaaaaaaggcttttagcttttccccacttattatgatgttagctgtgggtttgtcatatatgacctttgctatgctgaggcatgttttttctatgcctaacttattgagagtttttatcatgaaggatgttagattttatcaaatatttttcctgtgtctattgagatgatcttgttgttttagtctctcatatgttgatgtgatgtgcacgtttattgatttgcatacgtcgaaccatcattgcatccctaggataaatcccacttgattatggtgtattatgttattggtgtgttgttggatttg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226446927 4014 - 229942017 agcactaaatgcccacatcagaaagctggaaagatcccaaatcgacaccttaacatcacaattgaaagaactagagaagcaagagcaaacaaatccaaaagctagcagaagacaataaataagtaagatcagagcagaactgaaggagatggagactcgaaaaacccttcaaaaaatcaatgaatccaggagccag-ttttgtgaaaaaaaaa-aaaattaacaaaatagac---cacttcattagactaataaagaagaaaaggagaagaatcaaatagacacaatagaaaatgataaaggggatatcaccactgatcccacagaaatacaaactaccatcagagaacac-tagaaacacctctgtgcaaataaactagaaaatctagaagaaatggataaattcctgggcacatacaccctcccaagactaaaccagggagaagtcaaatccctgaatagaccaataacaagttctgaaattgaggcagtaattaatagcctaccaaccagaaaaagtccaggaccagatggattcacagccaaattctaccagaggtacaaaggggagctggtgccattccttctgaaactattccaatcaagagaaaaagagggaatcctccctaactcattttatgaggccagcaccatcctgataccaaaacctggcagagacacaacaagaaaaagaaaactcggccgggcacggtggctcacagtggcttatgcccataaccccagcacttagggaagccaaggcaggtggatcacttgaggtcaggagttcgagaccagcct-gccaacatggcaaaaccctgtctctactaaaattacaaaaattagctgggcgtggtggcaggtgcctgtaatcccagctaatcggaaggctgaggcgggggaatcgcttgaacctgggaggcagagattgcagttagccaagatcaagtcagcttcatccctggttcaacatgcaaatcaataaacatagtccatcacataaacagaaccaatgacaaaaaccacatgattatctcaatagatgcagaaaaggccttcaataaaattcaacacccttcatgcctcaataaactaggtattgatggaacgtttctcaaaataataagagctatttatgacaaacccatagccaatatcatactgaatgggcaaaagctgaaacaattccctttgaaaaccagcacaagacaacgatgccctctctcagcactcctattcaacatagtgttagaagttctggccagggcaatcagacaagagaaagaaataaagcatattcaaataggaagagagaaggtcaaattttctctgtttgcagttggcctgattctatatttagaaaactccatcatctgagcccaaaaacttcttgaactgataagcaacttcagcaaattctcaggatacaaaatca--gtgcaaaaatcacaagcattcctatacaccaacaacagacaaacagagagccaaatcatgaatgaactcccattcacaat-gctacaaagagaataaaatacccaggaataccttacaaggaatgcaaaggacctcttcaaggagaactacaaacaactgctcaaggaaataagagaggacacaaacaaatggaaaaacatctcatcctcatggataggaagaatcaatattgtgaaaatggccatactg-ccaaaataatttatagatccagtgctattcccatcaaactacattgacagtcttcacagaattagaaaaagctactttaaatttcatatgaaaccaaaaaagagcccatataggaaagacaatcctaatcaaaaagaacaaagctgg-aggcatcacgctacctgacttcaaactatactacaaggctacagtaaccaaaataacatggtactggtaccaaaacagacatatagaccaatggaacagaacagagacctcagaaataacactacacatctacaacaatctgatcttcgacaaacctgacaaaaacaagcaatggagaaagaactccctatttaataaatggcactgggaaaa---gctagccatatgcagaaaactaaaactggaccccttccttatac-------aaaaa-ttaactcaagatggattaaagacttaaatgtaaaactcaaaaccataaaatccctagaagaaaacctaggcactaccagccaggacataggcagaggcaaagacttcatgacgaaaacaccaaaagaaatt-tcaacaaaagccaaaattgacaaatgggatctaattaagctaaagagcttctgcacagcaaaagaaactagcatcagagtgaacagaaaacctacaaaatgggagaaagtttttgcaatctatccatctgacaaaggtctaatatccagaatctacaaggaacctaaatttacaagaaaaa---------------aaaaatcaaaaagtgggcaaaggatatggggatatacttctcaaaagaagacatttatgtggccaacaaacatgaaagaaagctcaacat----cactgatcattagaaaaatgcaaatcaaaacgacaatgagataccatctcatgccagtcagaatggtg--attattaaaaagtcaagaaacaatagatagtggaaaggctgtggagaaatagaaaggcttttacattgttggtgggagtgtaaattagttcaactattgtggaagacagtgtggcgattcttcaaggatctagaaccagaaataccatttgacccagcaatcccattgctgggtatatgcccaaaggaatataaatcattctactatgaagacacatgcacatgtatatttattgcagcactattcacaatagcaaagacatggaaccaacccaaatgcccatca-----atgatagactgcataaagaaaatgtaatacatatacaccatggaatactatgcagctataaaaaaggatgagatcatgtcctttgcagggacatggatgaagttggaagccatcatcttcagcaaactaacacaggaacagaaaaccaaacaccacatgttctcactcataagcgagagttgaacaatgagaacacatggacccagggaggggaacaacatacaccagggcctgtcgggggattgagggaaaggggagtgagagcattaggacaaatacctaatgcatgtggggcttaaaacctagatgacaggttgatgggtacagcaaaccaccatagtacacgtataactatataacaaaactgcaggttctgcacatgtatcccagaacttaaag-taaaaa-aata--aata--aataa----tattaactcttctgatccatgagcatgggatgtcttttcatttttttctatgttcttcaatttttttcatcagtattttgaagtttttgttatagaggtatttcacctccttacatttattcctaggtattttttagtagctatagtagatgggatagctttcttgatttctttttcaactatttgttactggtgtatagaaacactactgatttttgtatccagccacattaccaaatttatcagttctaagag-tttttggtgaaatctttaggttgttctaattattatatgccatctgcaaagaggaacaatttgactttctcttttccagtttggatgccttttatttctttctcttgcctaattgctctagccaggacttccagtactatgttgaataacagtggtgaaagtgggcatccttgtcttgttccagttcttag--aaaaaaaa-ggcttttagcttttccccacttattatgatgttagctgtgggtttgtcatatatgacctttgctatgttgtggcatgtttttcctatgcctaacttattcagagtttttatcatgaaggatgttggattttatcaaatacttttcctgtgtctattgagatgatcttgttgttttagtctctcatatgttgatgtgatgtgcacgtttattgatttgcatacatcgaaccatcattgcatccctaggataaatcccacttgattacggtgtcttatctttttggtgtgttgttggatttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140337002 4016 - 143122389 agcactaaatgcccacatcagaaagctggaaagatctcaaatcgacaccttaacatcacaattaaaagaactagagaagcaagagcaaacaaatccaaaagctagcagaagacaataaa----aaagatcagagcagaactgaaggagatggagacgcgaaaaacccttcaaaaaatcaatgaatccaggagccag-ttttctggaaaaaaaaaaaaattaacaaaatagac---cacttcattagactaataaagaagaaaaggagaagaatcaaatagccacaatagaaaatgataaaggggatatcaccactgatcccacagaaatacaaactaccatcagagaatacttataaacacctctgtgcaaataaactagaaaatctagaagaaatggataaattcctggacacatacaccctcccaagactaaaccaggaagaagtcgaatccctgaatagaccaataacaagttctgaaattgaggcagtaattaatagcctaccaacgaaaaaaagtccaggaccagatggattcacagccgaattctaccagaggtacaaagaggagctggtacca-tccttctgaaattattccaaacaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaaacctggcagagac---acaagaaaaagaaaactcggccgggcacagtgcctcacagtggctcatgcccataaccccagcacttagggaagccaaggcaggcggatcacttgatgtcaggagttcgagaccagcct-gccaacatggcaaaaccctgtctctactaaaattacaaaaattagctgggcgtggtggcgggtgcctgtaatcccagctaatcgggaggctgaggcaggagaatcacttgaacctgggaggcagagattgcagttagccaagatcaagtcagcttcatccctggttcaacatgcaaatcaataaacataatccatcacataaacagaaccaatgacaaaaaccacatgattatctcaatagatgcagaaaaggccttcaataaaattcaacacccttcatgcctcaataaactaggtattgatggaacgtttctcaaaacagtaagagctatttatgacaaacccatagacaatatcatactgaatgggcaaaagctggaagcattccctttgagaaccagcacaagacaaggacgccctctctcagcactcctattcaacatagtgttagaagttctggccagggcaatcagagaagagaaagaaataaagcatattcaaataggaagagaggaagttaaattgtctctgtttgcagttgacctgattctatatttagaaaactccatcatctgagcccaaaaacttattgaactgataagcaacttcagcaaattctcaggatacaaaatca--gtgcaaaaatcacaagcattcctatacaccaacaacagacaaacagagagccaaatcttgaatgaactcccattcacaatcactacaaagagaataaaatacccaggaataccttacaaggaatgcgaaagacctcttcaaggagaactacaaacaactgctcaaggaaataagagaggacacaaacaaatggaaaaacatctcatcctcatggataggaagaattaatatcatgaaaatggccatactg-ccaaaataatttatagatccagtgctattcccatcaaagtacatcgacagtcttcacagaattagaaaaagctactttaaatttcatatgaaaccaaaaaagagcccatatagcaaagacaatcctaatcgaaaagaacaaaactgg-aggcttcacactacctgacttcaaactatactacagggctgcagtaaccaaaacaacatggtactggtaccaaaacagacatatagaccaatggaacagaacagagacctcagaaataacactacacatctacaacaatctgatcttcaacaaacctgacaaaaacaagcaatggagaaagaactccctatttaataaatggtactgggaaaa---gctagccatatgcagaaaattaaaactggaccccttccttacaccttatacaaaaa-ttaactcaagatggattaaagacttaaatgtaaaacccaaaaccataaaaaccctagaagaaaacctaggcactaccagccaggacataggcagaggcaaagacttcatgaagaaaacaccaaaagcaatt-gcaacaaaagccacaattgacaaatgggatctaattaagttaaggagctcctgcacagcaaaagaaactagcatcagagggaacagacaacctacaaaatgggagaaagtttttgcaatctatccatctgacaaaggtctaatatccagaatctacaaggaacctaaatttacaagaaaaa--a-----------agaacatcaaaaagtgagcaaaggatatggagagacacttctcaaaacaagacatttatgtggccaacaaacatgacagaaagctcaacat----cactgatcattagagaaatgcagatcaaaacgacgatgagataccatctcgtgccagtcagaatgatg--attattaaaaagtcaagaaacaatagatggtggcaaggctgtggagaaatagaaacgctttcacattgttggtgggaatataaattagttcaactattgtggaagacagtgtggcgattcttcaaggatctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctactatgaagacacatgcacacatatatttattgcagcactatttacaatagcaaagacatggaaccaacccaaatgtccatca-----atgataaactgcataaagaaaatgtaatacatacacaccatggaatactatgcagccatagaaaagaatgagatcatgtcctttgcagggacatggatgaagctggaagccatcattctcagcaaactaacacaggaacagaaaaccaaacaccacatgttctcacttataagcgggagttgaacaatgagaacacatggactcagggaggggaacaacacacaccagggcctgtcggggggttgagggaaaggggagtgagagcattaggacaaatacctaatgcatgtggggcttaaaacctagttgacaggttgatgggtacagcaaaccaccatagtacatgtataactatataacagaactataggttttgcacatgtatcccagaacttaaag-taaaaa-aaTG--A--t--aataa----tatttactcttctgatccatgagcatgggatgtcttttcatttttttctatgttcttcaatttttttcatcagtattttgaagtttttgttatagagatatttcacctccttccatttattcctacgtattttttggtagctgtagtagatgggatagctttcttgatttctttttcaactatttgttactggtgtatagaaacactactgatttttgtatccagccactttaccaaatttatcagttctaagagttttttggtggaatctttaggttgttctaattattatacgccatctgcaaagaggaacaatttgactttctcttttccagtttggatgctttttatttcttcctcttgcctaattgctctagctaggacttctagtactatgttgaataacagtggtgaaagtgggcacccttgtcttgctccagttcttag--caaaaaag-ggcttttagcttttccccacttattatgatgttagctatgggtttgtcatacatgacctttgctatgttgaggcatgttttttctatgcctaacttattgagagtttttatcatgaaggatgttggattttatcaaatacttttcctgtgtctattgagatgatcttgtgcttttaatctctcgtatgttgatgtgatgtgcacgtttattgatttgcatacatcgacccatcatggcat-cctaggataaatcccacttgattacggtgtattaactttttggtgtgttgttggatttg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223805665 4003 - 227556264 agcactaaatggccacatcagaaagctggaaagttctcaaatcgacaccctaacatcacagttaaaagaactagagaagcaagagcaaacaaatccaaaagctagcagaagacaataaataactaaaatcagagcagaactgaaggatatggagacatgaaaaacctttcaacaaatcaatgaatccaggagctgg-ttttttgaaaaaaa-------ttaacaaaatagatagactgctcactagactaataaagaagaaaaggagaagaatcaaatagacacaatagaaaatgataaagaggatattaccactgatcccacagatatacaaactaccatcagagaatac-tataaacacctctgtgcaaataaactagaaaatctagaagaaatgggtaaattcctggacacatataccctcccaagactaaaccaggaagaagtcaaatccttgaatagaccaataacaagttctgaaattgagccagtaattaatagcctaccaaccagaaaaagtccaggaccagatggattcacagctgaattctaccagaggtacaaagaggagctggtaccattccttctgaaactattccaaacaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaaacctggcagagacacaacaagaaaaagaaaactCAGCTGGGCACGGTGGCTTAcagtggctcatgcctgtaaccccagcacttaggaaagccaaggcaggcggatcacctgaggtcaagagttcgagaccagcctggccaacatggcaaaaccccgtctctactaaaattacaaaaattagctgggcgtggtggcgggtgcctgtaatctcagctaattgggagcctgaagcaggagaatcacttgaacctgggagacagagattgcagttagccaagatcAAGTCAGCTTCGTTCCTGG----acatgcaaattaataaacataatccatcacataaacagaaccaatgacaaaaaccacatgattatctcaatagatgcagaaaaggccttcaataaaattcaacacccttcatgcctcaataaactaggtattgatggaacatttctcaaaataataagagctatttatgacaaacccatagccagtatcatactgaatgggcaaaagctggaagcattccctttgaaaactagcacaagacaaggatgccctctctcagcattcctattcaacacagtgttagaagttctggccagggcaatcaggcaggat----aaataaagcgtattcaaataggaagagaggaagtcaaattgtctctctttgcagttgacctgattctatatttagaaaaccccatcatccgagcccaaaaacttcttgaactaataagcaacttcagcaaattctcaggatacaaaatcaatgtgcaaaaatcacaagcattcctatacaccaacaacagacaaacagagagccaaatcatgaatgaactcccattcacaatcactacaaagagaataaaatacccaggaataccttacaaggaatgcgaaggaccttttcaaggagaactacaaacaactgctcaaggaaataagagagaac----acaaatggaaaaacatctcatcctcacgt---------atcaatatcgtgaaaatggccatactgcccaaaataatttatagatccagtgctgttcccatcaaactacattgacagtcttcacagaattagaaaaagctactttaaatttcatattaaaccaaaaaagagcccatatagcaaagacaatcctaatcaaaaagaacaaagctgg-aggcatcacgctacctgacttcaaaccatactacaaggctacagtaaccaaaacaacgtggt----ttaccaaaacagacatatagaccaatggaacagatcagagacctcagaaataacaccacacgtctacaacaatctgatcttcgacaaacctgacaaaaacaagcaatggagaaagaattccctatttaataaatggtgctgggaaaa---gctagccatgtgcagaaaactaaaactggatcccttccttacacctcatac-aaaa-ttaactcaaaatggattaaagacttaaatgtaaaacccaaaaccataaaaaccctagaagaaaacctaggcgctaccatctagtacatagacacaggcaaagacttcatgacaaaaacaccaaaagcaatt-gcaacaaaagccaaaactgacaaatgggatctaattaagttaaagagcttctgcacagcaaaagaaactagcatcagcgtgaacagacaacctacaaaatgggagaaaatttttgcaatctatccatctgacaaaggtctaatatccagaatctacaaggaacctgaatttacaaggaaaaaaa-aaaaaaaaacaaaacatcaaaaagtgggcaaaggatatggagagacacttctcaaaagaagacatttatgtggccaacaaacatgaaagaaagctcaatatcacacactgatcattagagaaatgcaaatcaaaaccacaatgagataccatctcatgccggtcagaatggtaatattataaaaaagtcaagaaacaatagatgctggtgaggctatggagaagtaggaacgcttttacattgttggtggaaatgtacattagttcaaccattgtggaagacagtgtggcaattcttcaaggatctagaaccagaaataccatttgacccagtaatcccattactgggtatatacccaaaggaatataaatcattctactataaagacacatgcacctgtatatttattgcagcactatttacaataggaaagacatggaaccaacccaaatgcccatcaatgacatgacagacggcataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaagaatgagttcatgtcctttgcagggacgtggatgaagctggaagccatcatcctcagcaaactgacacaggaacagaaaaccaaacaccacatgttctcactcataagcgggagttgaacaatgagaacacatggacccagggaggggaacaacatacaccagggcctgttgtggggttgagggaaaggggagtgagagcattaggacaaacacctaatgcatgtagggcttaaaacctagatgacaggttgatgggtacagcaaaccaccatggtacatgtataactatataacaaacctgcaggttctgcccacgtatcccagaacttaaag-taaaaATAATAATAATAAtaataa----tattaactcttctgatccatgagcat-ggatgtcttttcatttttttctatgttcttcaatttttt--atcagtattttgaagtttttgttacagagatatttcacctccttacatttattcctacgtattttttggtagctatagtagatgggatagctttcttgatttctttttcaactatttgttactggtgtttagaaacactactgatttttgtatccagccgctttaccaaatttatcagttctaagaattttttggtggaatctttaggttgttctaattattatacgccatctgcaaacaggaacaattt--ctttctcttttccaatttggatgccttttctttctttctcttgcctaattgctctagctaggacttccagtactatgttgagtaacagtggtgaaagtgggcgttcttgtcatgttccagatcttagaaaaaaaaaa-ggcttttagcttttccccac---ttacaatgttagctgtgggtttgtcata------------tatgttgaagcatgttttttctatgcctaacttattgaaag-ttttattatgaaggatgttggattttaacaaatacttttccagtgtctattgagaggatcttgtggttttagtcccttatatgttgatgtgatgtgcacatttattgatttgcatacattgaaccatcattgcatccctaggataaatcccacttcattatggtgtattatctttttcgtgtgt------atttc i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82655577 4006 + 85787240 aacactaaatgcccacatcagaaagctggaaagttctcaaatcgacaccctaacatcacagttaaaagaactagagaagcaagagcaaacaaatccaaaagctagcagaagacaataaataactaagataagagcagaactgaaggatatggagacatgaaaaacccttcaacaaatcaatgaatccaggaggtggtttttttgaaaaaaa-------ttaacaaaatagatagactgctcactagactaat---gaagaaaaggagaagaatcaaatagacacaatagaaaatgataaaggggatattaccactgatcccacagatatacaaactaccgtcagagaatac-tataaacagctcggtgcaaataaactagaaaatctagaagaaatcgataaattcctggacacatacaccctcccaagactaaaccagtaagaagtcgaatccctgaatagaccaataacaagttctgaaattgaggcagtaattaatagcctaccaaccagaaaaagtccaggaccagatggattcacagttgaattctaccagaggtacaaagaggagctggtaccaatccttctgaaactattccaaacaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctgataccaaaacctggcagagacacaacaagaaaaagaaaactCGCCTGGGCATGGTGGCTcacagtgggtcatgcctgtaaccctagcacttagggaagccaaggcaggcagttcacctgaggtcaagagttcgagaccagcctggccaacatggcaaaaccctgtctctactaaaattacaaaaattagctgggcgtggtggcgggtgcctgtaatctcagctaattgggagcctgaggcagaggaatcgcttgaacctgggagacagagattgcggttagccaagatcaagtcagcttcatccctggttcaacatgcaaatcaataaatataatccatcacataaacagaaccaatcacaaaaaccacatgattatctcaatagatgcagaaaaggccttcaataaaatttaacacccttcatgtctcaataaactaggtattgatggaatgtttctcaaaataataagagctatttatgacaaacccatagccaatatcatactgaatgggcaaaagctggaagcattccctttgaaaaccagcacaagacaaagatgccctctctcagcactcctattcaacatagtgttagaagttctggccagggcaatcaggcaggataaagaaataaagcgtattcaaataggaagagaggaagtcaaattgtctctctttgcagttgacctgattctatatttggaaaaccccatcatccaagcccaaaaacttcttgaactaataagcaactacagcaaattctcaggatacaaaatcaatgtgcaaaaatcataagcattcctatacaccaacaacagacaaacagagagccaaatcatgaatgaactcccattcacaatcactacaaagagaataaaatacccaggaataccttacaaggaatgcgaaggacctcttcaaggagaactacaaacaactgctcaagcaagta----agaac----acaaatggaaaaacatctcatcctcatgtatagg----atcaatatcgtgaaaatggccatactgcccaaaataatttatagatccagtgctgttcccatcaaactacattgacagtcttcacagaattagaaaaagctactttaaatttcatatgaaaccaaaaaagagcccatatagcaaagacaatcctaatcaaaaagaacaaagctgg-aggcaccacgctacctgacttcaaactatactacaaggctacagtaaccaaaacaacatggtactggtaccaaaacagacatatagaccaatggaacagatcagagacctcagaaataacaccacacgtgtacaacaatctgatcttcgacaaacctgacaaaaacaagcaatggagaaagaattccctatttaataaatggtactaggaaaactggctagccatgtgcaaaaaactaaaactggaccccttccttacaccttatacaaaaa-ttaactcaagatggattaaagacttaaatgtaaaacccaaaaccataaaaaccctagaagaaaacctaggcgctaccatctaggacataggtataggcaaagacttcatgacaaaaacaccaaaagtaatt-gcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactagcatcagagtgaacagacaacctacaaaatgggagaaaatttttgcaatctatccatctgacaaaggtctaatatccagaatctacaaggaacctaaatttacaaggaaaaaaacaaaacaaaacaaaacatcaaaaagtgggcaaaggatatggaatgacacttctcaaaagaagacatttatgtggccaacaaacatgaaagaaagctcaatat--cacactggtcattagagaaatgcaaatcaaaaccacaatgagataccagctcatgccagtcagaatggtaatattataaaaaagtcaagaaacaatagatgctggtgaggctgtggagaagtaggaacgcttttacattgtcggtgggaatgtaaattagttcaaccattgtggaagacagtgtggcaattcttcaaggatctagaaccagaaatacaatttgacccagtaatcccattactgggtatatacccaaaggaatataaatcattctactataaagacacatgcacgtgtatatttattgcagcactatttacaataggaaagacatggaaccaacccaaatgcccatca-----atgatagactgcataaagaaaatgtagtacatatacaccatggaatactatgcagctgtaaaaaagattgagatcatgtcctttgcagggacatggatgaagctggaagccatcatcctcagcaaactgacacaggaacagaaaaccaaacaccacatgttctcactcataagcgggagttgaacaatgagaacacatggacccagggaggtgaacaacatacaccagggcctgttatggggttgagggaaaggggagtgagagcattaggacaaacacctaatgcatgtagggcttaaaacctagatgacaggttgatgggtacagcaaaccaccatggtacacgtataactgtataacaaacctgcaggttctgcccatgtatccaagaacttaaagttaaaaaaaata--aata--aataa----tattaactcttctgatccatgagcat-ggatgtcttttcatttttttcta-gttcttcaatgtttt--atcagtgttttgaagtttttgttacagagatatttcacttccttacatttattcctaggtattttttggtagctgtagtagatgggatagctttcttgatttctttttcaactatttgttactggtgtttagaaacactactgatttttgtatccagccactttaccaaatttatcagttctaagaattttttggtggaatctttaggttgttctaattattatatgccatctgcaaacaagaataattt--ctttctcttttccaatttggatgccttttatttctttctcttgcctaattgctctagctaggacttccagtactatgttgaataacagtggtgaaagtgggcatccttgtcttgttccagatcttag--aaaaaaga-ggcttttagcttttccccac---ttatgatgttacctgtgggtttgtcata------------tatgttgaagcatgttttttctatgcctaacttattgaaag-ttttattatgaaggatgttggattttaacaaatacttttcctgtgtctattgagaggatcttgtggttttagtcccttatatgttgatgtgatgtgcacgtttattgatttgcatacattgaaccatcattgtgtccctaggataaatcccacttgattttggtgtattaccttttttgtgtgt------atttc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e rheMac3.chr1 17041871 4163 - 229590362 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=35187.000000 s hg38.chr1_KI270759v1_alt 325823 20 + 425601 gttcgctagtattttttaga s panTro4.chr1 225081577 20 + 228333871 gttcgctagtattttttaga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226450941 20 - 229942017 gttcgctagtattttttaga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140341018 20 - 143122389 gttcgctagtattttttaga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17046034 20 - 229590362 gtttgctagtattttttaga i rheMac3.chr1 I 4163 C 0 s macFas5.chr1 223809668 20 - 227556264 gtttgctagtattttatata i macFas5.chr1 C 0 I 335 s chlSab2.chr25 82659583 20 + 85787240 gtttgctagtattttttaga i chlSab2.chr25 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=2113143.000000 s hg38.chr1_KI270759v1_alt 325843 1220 + 425601 tgatttttgcatctatgttcatcagggatattggtatctcattttggtattaggataatggtggcctggttgcgtgaattaggaagacttcccgcctcttcaattttt-ggaatagtttgagaagaattggttttactttactccttaattctactgaacttttaaagtcctgggcttttctttgttggggaactttttattactgattaattcttgttactcattatttgttcagatttttttattcttcctgatttaatcttgtaaggctgtatgtgtccaagagtttatccatttcacctgagctttccaatttgttcgtgtgtagttcttcataagactctaatc---atttgtatttctgtggtatttttttcatttctcatttttt---aaaatttggatcttttttcttggttagtctaacagtttaatcaattttggttcctttcaaaaatcaagcttttattttcttgatcctttgtaatttttgtgtgtgtgt--gtgtttatttcgtctctgatcttta--------ttctttcttctgatttttggctcagtttgctttggcttttttagttccttgagatgcatcattcggttgtctatttgaaatctttctccttttttgaggaaaacatttattactctaaacccctcttactactgcttttgttgtatcccgtaggtttaggaatggtgtttttccattttcatttgttttaag-aaaaaagattttatttca----ttcatttaggagcatgttttcatgtaggagcatggttttaaattttcatttatttgtacagtttctaaag---ttcttgttattgatttc--gttttactgaattgtgatctaagatgcttgatatgatttcaacttttaaaaatgtgttgagagttattttgtggtctaacacatggtctatcatggagaatattccatgtactgataataaggttgtgtattttgcagcacttgaatgaaatgctctctaaatatctgttcgatccatttggtctgtagtgcggattaagttcaatgtttctttattgattttctgtctagttgatctgtccagtgctaaagcggagtggtggaccaggaccaggcacattggctcacacctgtaatcccagcactttggaaggccaaggcgggccaatcacttgagctcaggagtttgagaccagcctgggcaacatggtgaaactctgtctctagaaaaaatacaaaaac s panTro4.chr1 225081597 1222 + 228333871 tgatttttgcatctatgttcatcagggatattggtatctcattttggtattaggataatgctggcctggttgcgtgaattaggaagacttctcgcctcttcaattttttggaatagtttgagaagaattggttttactttactgcttaattctactgaacttttaaagtcctgggcttttctttgttggggaactttttattactgattaattcttattactcattatttgttcagatttttttattcttcctgatttaatcttgtaaggctgtatgtgtccaagagtttatccatttcacctgagctttccaatttgttagtgtgtagttcttcataagactctaatc---atttgtatttctgtggtatttttttcatttctcatttttt---aaaatttggatcttttttcttggttagtctaacagtttaatcaattttggttcctttcaaaaatcaagcttttattttcttgatcctttgtaattttttttttttttt-agtgtttattttgtctctgatcttta--------ttctttcttctgatttttggctcagtttgctttggcttttttagttccttgaggtgcatcatttggttgtctatttgaaatctttctccttttttgaggaaaacatttattactctaaacccctcttactactgcttttgttgtatcccgtaggtttaggaatggtgtttttccattttcatttgttttaag-aaaaaagattttatttca----ttcatttaggagcatgttttcatgtaggagcaaggttttaaattttcatttatttgtacagtttctaaag---ttcttgttattgatttc--gttttactgaattgtgatctaagatgcttgatatgatttcaacttttaaaaatgtgttgagagttattttgtggtctaacacatggtctatcatggagaatattccatgtactgatgataaggttgtgtattttgcagcacttgaatgaaatgctctctaaatatctgttagatccatttggtctgtagtgtggattaagttcaatgtttctttattgattttctgtctagttgatctgtccagtgctaaagtggagtggtggaccaggaccaggcacactggctcacacctgtaatcccagcactttggaaggccaaggcgggccaatcacttgagctcaggagtttgagaccagcctgggcaacatggtgaaactctgtctctagaaaaaatacaaaaac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226450961 1218 - 229942017 tgatttttgcatctatgttcatcagggatattggtatctcattttggtattaggataatgctggcctggttgcatgaattaggaagacttccctcctcttccattttttggaatagtttgagaataattggttttactttactgcttaattctactgaacttttaaagtcctgggcttttctctgtgggggaactttttattactgattaattcttgttactcattatttgttcagattttcttattcttcctgatttaatcttgtaaggctgtatgtgtccaagagtttatccatttcacatgagctttccaatttgttagtgtgtagtttttcataagactctaatc---atttgtatttctgtggtatttttttcatttctcatttttt---aaaatttggatcttttttcttggttagtctaacagtttaatcagttttggttcctttcaaaaatcaagcttttattttcttgatcctttgtaattttttttttttttttagtctttatttcttctctgatcttta--------ttctttcttctgatttttggctcagtttggtttggcttttttagttcctcgaggtgtatcatttggttgcctatttgaaatctttctacttttttgaggaaaacatttattactctaaacccctcttactactgcttttgttgtatcccataggtttagaaatggtgttttt-cattttcatttgttttaag-aaaaaagattttatttca----ttcatttaggagcatgttttcatgtaggagcatggttttaaattttcatttatttgtacagtttctaaag---ttcttgttattgatttctagttttattgaattgtggtctaagatacttgatatgatttcaacttttaaaaatgtgttgagagttattttgtggtctaacacatggtctatcatggagaatattccatgtactgataatgaggttgtgtattttgcagcacttgaatgaaatgctctgtaaatatctgttagatccattgggtctgtagtgtggattaagttcaatgtttctttattgattttctgtctagttgatctgtccagtgctaaagtggagtggt------ggaccaagcacattggctcatacctgtaatcccagcactttggaaggccaaggtgggccaatcacttgagctcaggagtttgagaccagcctgggcaacatggtgaaactctgtctctagaaaaaatacaaaaat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140341038 1216 - 143122389 tgatttttgcatctgtgttcatcagggatattggtatctcattttggtattaggataatgctggcctggttgcatgaattaggaagacttccctcctcttccattttttggaatagtttgagaagaattggttttactttactg-ttaattctactgaacttttaaagtcctgggcttttctttgttggggaactttttattggtgattaattcttgttactcattattcgttcagattttcttattcttcctgatttaatcttgtaaggctgtatatgtccaagagtttatccatttcacctgagctttccaatttgttagtgtgtactttttcataagactctaatc---atttgtatttctgtggtatttttttcatttctc-tttttt---taaatttggatcttttttcttggttagtctaacagtttaatcaattttgtttcctttccaaaatcaa-cctttattttcttgatcctttgtaattttttttt-------agtctttatttcttctctgatctttattctttctttctttcttctgatttttggctcagtttggtttggcttttttagttccttgaggtgcatcatttggttgtctatttgaaatctttctacttttttgagaaaaacatttattactgtaaacccctcttagtactgatattgttgtatcccataggtttaggaatgatgtttttccattttcatttgttttaag-aaaaaagattttatttca----ttcatttaggagcatgttttcatgtaggagcgtggttttaaattttcatttatttgtacagtttctaaag---ttcttgttactgacttctagttttattgaattgtggtctaagatgcttgatatgatttcaacttttaaaaatgtgttgagagttattttgtggtctaacacatggtctatcgtggagaatattccatgtactgataataaggttgtgtattttgcagcgcttgaatgaaatgctctctaagtatctgttggagccatttggtctgtagtgtggattaagctcaatgtttctttattgattttctgtcta-ttgatctctccagtgctcaagtggagtggt------ggaccgggcacagtggctcacacctgtaatcccagcactttgggaggccaagacgggccaatcacttgagctcaggagtttgagaccagcctgggcaacatggtgaaactctgtctctagaaaaaatacaaaaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17046054 1219 - 229590362 tgatttttgcatctgtgttcatcagggatattggtatctcgttttggtattaggataatgctggcctggttgcatgaattaggaagacttccctcctcttcagttttttggaatagtttgagaagaattggttttattttactgcttaattctactgaacttttaaagtcctgggcttttctttgttggggaactttttattactaattaattcttgttactcattatttgttcagatt---ttattcttcctgatttaatcttgtaaggttgtatgtgtccaagagtttatccatttcacctgagctttccaatttgttagggtgtagtttttcataagactctaatcattatttgtatttctgtggtatttttttcatttctcatttttttaaaaaaattggatcttttttcttgattagtctaacagttt-atcaattttgtttcctttcaaaaatcaaccttttattttcttgatcctttgtaaattttttt--------agtctttatttcttctctgatcttta--------tgatttcttctgatttctggctcagtttggtttggcttttttagttcctaaaggtgcattatttggttgtcgatttgaaatctttctacttttttgaggaaaacatttattactgtaatcccttc--agtattgctattgttgtatcccataggtttaggaacggtgtttttccattttcatttgttttaagaaaaaaagattttatttcattctttcatttaggagcatgttttcgtgtaggagtatgttttataattttcatatatttgtacaatttctaaagttcttcttgttattgatttcttgttttattaaactgtggtctaagatgcttgatatgatttcaacttttaaaaatgtgttgagaattattttgtggtctaacacatggtctatcatggagaatattccatgtactgataataacgttgtgtattttgcagcacttgaatgaaatgttctccaaatatctgttagatccatttggtctgtagtgcggattaagttcaatgtttctttattgattttctgtctagttgatctgtccagtgctaaagtggagtggt------ggaccgggcacattggctcacacctgtaattgcagcactttggaaggccaaggtgggccaatcactcaagtttgggagtttgagaccagcctgggcaacatggtgaaactctgtctctagaaaaaataaaataat i rheMac3.chr1 C 0 I 101 s macFas5.chr1 223810023 1219 - 227556264 tgatttttgcatctgtgttcatcagggatattggtatctcgttttggtattaggataatgctggcctggttgcatgaattaggaagacttccctcctcttcagttttttggaatagtttgagaagaattggttttattttactgcttaattctactgaacttttaaagtcctgggcttttctttgttggggaactttttattactaattaattcttgttactcattatttgttcagatt---ttattcttcctgatttaatcttgtaaggttgtatgtgtccaagagtttatccatttcacctgagctttccaatttgttagggtgtagtttttcataagactctaatcattatttgtatttctgtggtatttttttcatttctcattttttaaaaaaaattggatcttttttcttgattagtctaacagttt-atcaattttgtttcctttcaaaaatcaaccttttattttcttgatcctttgtaaattttttt--------agtctttatttcttctctgatcttta--------tgatttcttctgatttctggctcagtttggtttggcttttttagttcctaaaggtgcattatttggttgtcgatttgaaatctttctacttttttgaggaaaacatttattactgtaatcccttc--agtattgctattgttgtatcccataggtttaggaatggtgtttttccattttcatttgttttaagaaaaaaagattttatttcattctttcatttaggagcatgttttcgtgtaggagtatgttttataattttcatatatttgtacaatttctaaagttcttcttgttattgatttcttgttttattaaactgtggtctaagatgcttgatatgatttcaacttttaaaaatgtgttgagaattattttgtggtctaacacatggtctatcatggagaatattccatgtactgataataacgttgtgtattttgcagcacttgaatgaaatgttctccaaatatctgttagatccatttggtctgtagtgcggattaagttcaatgtttctttattgattttctgtctagttgatctgtccagtgctaaagtggagtggt------ggaccgggcacattggctcacacctgtaattgcagcactttggaaggccaaggtgggccaatcactcaagtttgggagtttgagaccagcctgggcaacatggtgaaactctgtctctagaaaaaatacaaaaat i macFas5.chr1 I 335 C 0 s chlSab2.chr25 82659603 1222 + 85787240 tgatttttgcatctgtgttcatcagggatattggtatctcattttggtattaggataatgctggcctggttacatgaattaggaagacttctcacctcttcagttttttggaatagtttgagaagaattggttttattttactgcttaattctactgaacttttaaagtcctgggcttttctttgttggggagctttttattactaattaattcttgttactcattatttgttcagattttcttattcttcctgatttaatcttgtaaggttgtatgtgtccaagagtttatccatttcacctgagctttccaatttgttagtatgtagtttttcgtaagactctaatcattatttgtatttctgtggtatttttttcatttctcatttttaaaaaaaatttggatcttttttcttggttagtctaacagttt-atcaattttgtttcctttcaaaaatcaaccttttattttcttgatcctttgtaaattttttt--------agtctttatttcttctctgatcttta--------tgatttcttctgatttctggctcagtttggtttggctttttaagttcctaaaggtgcatcatttggttgtctatttgaaatctttctaattttttgagaaaaacatttattactataatcttctc--agtactgctattgttgtatcccataggtttaggaatggtgtttttccattttcatttgttttaagaaaaaaagattttatttcattctttcatttaggagcatgttttcatgtaggagcatgttttataattttcatatatttgtacagtttctaaagttcttcttgttattgatttctagttttattgaactgtggtctaagatgcttgatatgatttcaacttttaaaaatgtgtcgagaattattttgtggtctaacacatggtctatcatggagaatattccatgtactgataataatgttgtgtattttgcagcacttgaatgaaatgttctccaaatatctgttagatccatttggtctgtagtgcggattaaattcaatgtttctttattgattttctgtctagttgatctttccagtgctaaagtggagtggt------ggaccgggcacattggctcacacttgtaattgcagcactttggaacgccaaggtgggccaatcattcaagctcaggagtttgagaccagcctgggcaacatggtgaaactctgtctctagaaaaaatacaaaaat i chlSab2.chr25 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=135977.000000 s hg38.chr1_KI270759v1_alt 327063 106 + 425601 tagctgggtgtggtggcatgcacctgtagtgccagctactccggaggccaaggtggaaggatcg-tttgagcctgggagattgaggctgcagtgagccaagatcaca s panTro4.chr1 225082819 106 + 228333871 tagctgggtgtggtggcatgcacctgtagtgccagctactccggaggccaaggtggaaggatcg-tttgagcctgggagattgaggctgcagtgagccaagatcaca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226452179 106 - 229942017 ttgctgggcgtggtggcatgcacctgtagtgccagctactctggaggccgaggtggaaggatcg-tttgagcctgggagagtgaggctgcagtgagccaagatcaca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140342254 107 - 143122389 tagctgggtgtggtggcatgcacctgtagtgccagctactctggaggccgaggtagaaggatcattttgagcctgggagattgaggctgcagtgagccaagttcaca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223811242 106 - 227556264 tagctgggtgtggtggcatgcacccgtagtgccggctactctggaggccgagatggaaggatca-tttgagcctgggagattaagtctgcagtgagccaagaccacg i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82660825 106 + 85787240 tagctgggtgtggtggcatgcacccgtagtgtcagctactctggaggccgagatggaaggatcg-tttgagcctgggagattaagtctgcagtgagccaagatcaca i chlSab2.chr25 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e rheMac3.chr1 17047273 101 - 229590362 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=156507.000000 s hg38.chr1_KI270759v1_alt 327169 87 + 425601 ccactgctctccagcctgggtgacagagtgagaccccataccaaaaaataataaataataaaatggagtggtggaggcctcaactat s panTro4.chr1 225082925 87 + 228333871 ccactgctctccagcctgggtgacagagtgagaccccataccaaaaaataataaataataaaatggagtggtggaggcctcaactgt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226452285 87 - 229942017 ccactgctctccagcctgggtgatagagtgagaccccataccaaaaaataataaataataaaatggagtggtggaggcctcaactat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140342361 87 - 143122389 ccactgctctccagcctgggtgacagagtgagaccccataccaaaaaataataaataataaaatggagtggtggaggcctcaactat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17047374 83 - 229590362 ctactgctctccagcctgggtgacagagtgagaccccataccaaaaaat----aataataaaatggagtggtggaggcctcaactat i rheMac3.chr1 I 101 C 0 s macFas5.chr1 223811348 83 - 227556264 ctactgctctccagcctgggtgacagagtgagaccccataccaaaaaat----aataataaaatggagtggtggaggcctcaactat i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82660931 83 + 85787240 ctactgctctccagcctgggtaacagagtgagaccccatgccaaaaaat----aataataaaaTGGAATGGTGGAGGCCTCAACTAt i chlSab2.chr25 C 0 I 116 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=5791174.000000 s hg38.chr1_KI270759v1_alt 327256 3373 + 425601 tactgcattggggtcaagctctttagctctaatgataattgttttatataatatatctgggtactccagtgttgactgcatatatatttacaattgttatagtctcctgctgaattgttccctttatcattatattaatataatgaccttatttgtcactttttatgttttttggctaacattgtattttgtcttatgtaagtatagctactctggcacacttttggtttctattttcatggaataattttttccatccctt---------cattttcattctatgtgcatctttacaaatgaaatgcatttgttggaga--cagcatacagttgggtc-ttttttttttttttaaataaatccattcatcttgtctatattttttacttaaggaatttaaactgtttacattcaaggatgtcattgataggtaaggacttacttctgtgattttgtaaactgttttatgatggttttgtatattttttgttcctttcttcctcttgtattgcttaccttgatgatttggtagtttattgtagtgatgtttgactcctttctctttctcattcgtgtatctgctctcccagtgagtttttcagtcttgcgtattctcacggtggtagttattgtccttttgcttccagatgtagaactccctcaagcatttctcacagggcctgtctagtggtggtgaattccctccattt-tttcttgtttgggaaagac-ttt-----acttttcattcatttttt-aaggatagctttCAGCAATATTTCATCTTTTTT--------------------------------------------------------------------TAAGGATAGctttcagcaatattttatggtttttatgtacac-----attttaatcatatctctaaatcatgtgtttgatgttgttgtaaatggtatttttaattttttttgagttggggtgacagagtgacacccaggctggattgtagaggcacagtcatagctcactgcagcctcaaatttgt-------agtgttcctgccacctcagcctcctgagtagctaggattataggcacatgacatcatacccagctaatttctttttgtatcatttttctgtagagat-ggggtctcactatgttgaccaggctggtcttgaactcctggccttaagtgatccttctgccttggcctcccaaaatgctgggattaccggtgcgaggcaccacacccagccttatgttttaatttctaattgtttgttactatgataaagaaatgc-attgatttttgtccattgacctcatatcctgcaaccttcctaaactcacctattagttctagtaccttttttgtggattgcatccattagatttttctataggtgactatatcaccaatgaagatcatttgactttctttccaatctggatatcgttcatttattgtacttgccttattgtactggccaggacttccagtataatgttaaatggaaacggtgagagtggacatgcttgtcttgctcccaatcttagagggaaggcatttagtcttttaccattaagtatgatgttagctttagtttttagtagataccttttattaaattgaggatattgccttctacttatatattgctgagga-ttttttatcaggaatgactgaattttggtaaatgctttttctgcatctactgaaacaatcatatagttttcctttcagtttgttaatatggtaaattatattgattaggttttttttgttaatcaaccttgcattcctgaaataaacctcacttgctcatggtataaaaccctttgtatttgttgctagatacaa------tatttttttgagttggggtctcactctgtcacccaggctggagtgtagtggcatgatcacagctcactgcaattttaaactcctgtgctccagcaatccttccttccatctcagcctcccaactagctaggattacagtgtgcaccactgtgcccagctaa-ttttttatactttttttgtagtgatgaggtcttgctatgttgccctggctggtcttgaacttcgggcctgaagcacctcagcctcccataatactgagattgtaggagtaagccaccatgcctagccctagatacaattttctaatatggctctttaatattttatttagaat-ttttttggcaatgttcatgagggatattgttctgcaggtttttg----tgtttttttttttttttcaaacaacatacttgtttgcttttggtatcagattagtatagtatagcttgggaagtatttcttcctattttcaggaagactttgagtagaactgttattatttcttccttaaatggtgggtagaattcaccagtgcctccatctggtcctagagttttacctgtggaaaggttgtgaa-ctacagattctatttctttaatgaatctagggccatttttattatctattacctcttgaaagagctttggaatttttcatctttcaagacatttttccattcttacacattgtttaatttactggcataatgtttctttattatctttttgatatctgtaggaactttagatgaggccatctcattcctgatattgatcatttgtgtctttctttttcccagatcatttgtgctagggatttacaaattttgttgatcttctcaaagaaccaacttttga-tt---catcgacttttctccattgtttttggttttctgtttcgttgatttctgctattttttttcctttctgctatt-----tttttttcctttctgctatta-ttttgtctataatttgctcatcttttt-ctaatttcttaaggtgtaagctgagatcattgatttgaagccatggttgctttctgatataggcatttaatgctatacgtttgttttaagtacatcttcagggttattcacaaatttggatgggttgcattttcatttctattcacttaaaaagactttaaaattttcattttgaatttttccttgaccataggctgtttggggccaagttgtggagtttcagaatatttggaggtttttcagatattgttctacattgacttctaatttaattccattgtatcaggcaacatgctttgagtgacatgaatccttaacatttatttagacttgttctgtggaccagaatactgtgtatcttggtaaatgctttgtgtgcacttcaaaagaatgtgtattctgctattgttgggttgaatgttctgtgtcaagtagatatttgatagtattgttcaaatttatatccttatggttttctgtctacttgtcatatcagttttgagatgggggtatttgaaattgccaactataattaaagacttgtctgtttcttcatgcagttctaccagattgttcttcatggattagaacatgagccacataaatttttttattatgacctct---tgatgaa s panTro4.chr1 225083012 3371 + 228333871 tactgcattggggtcaatctctttagctctaatgataattgttttatataatatatctgggtactccagtgttgactgcatatatatttacaattgttatagtctcctgctgaattgatccctttatcattatattaatataatgaccttatttgtcactttttatgttttttggctaacattgtattttgtctgatgtaagtatagctactctggcacacttttggtttctattttcatggaataattttttccatccctt---------cattttcattctatgtgcatctttacaaaagaaatgcatttgttggaga--cagcatacagttgggtc-ttttttttaaaa--aaataaatccattcatcttatctatatctttaacttaaggaatttaaactgtttacattcaaggatgtcattgataggtaaggacttacttctgtgattttgtaaactgttttatgatggttttgtatatcttttgttcctttcttcctcttgtatggcttaccttgatgatttggtagtttattgtagtgatgtttgactcctttctctttctcattcgtgtatctgctctcccagtgagttttttagtcttgcgtattctcacggtggtagttattgtccttttgcttccagatgtagaactcccttaagcatttctcacagggcctgtgtagtggtggtgaattccctccattt-tttcttgtttgggaaagac-ttt-----atttttcattcatttttttaaggataggtttCAGCAATATTTCATCTTTTTT--------------------------------------------------------------------TAAGGATAGctttcagcaatattttatagtttttatgtacac-----attttaatcatatctctaaatcatgtgtttgatgttgttgtaaatggtatttttaattttttttgagttggggtgacagagtgacacccaggctggattgtagaggcacagtcatagctcactgcagcctcaaatttgt-------agtgatcctgccacctcagcctcctgagtagctaggattataggcacatgacatcatacccagctaatttctttttgtatcatttttctgtagagat-ggggtctcactatgttgaccaggctggtcttgaactcctggccttacgtgatccttctgccttggcctcccaaaatgctggaattaccggtgtgaggcaccacacccagccttatgttttaatttctaattgtttgttactatgataaagaaatgc-attgatttttgtccattgacctcatatcctgcaaccttcctaaactcacctattagttctagtaacttttttgtggatttcatccattagatttttctataggtgactatatcaccaatgaagatcatttgactttctttccaatctggatatcgttcatttattgtacttgccttattgtactggctaggacttccagtataatgttaaatggaaatggtgagagtggacatgcttgtcttgctcctaatcttagagggaaggcatttagtcttttaccattaagtatgatgttagctttactttttagtagataccttttattaaattgaggatattgccttcgacttatatattgctgagga-ttttttatcaggaatgactgaattttggtaaatgctttttctgcatctactgaaacaatcatatagttttcctttcagtttgttaatatggtaaattatattgattaggttttttt-gttaaccaaccttgcattcctgaaataaacctcacttgctcatggtataaaaccctttgtatttgttgctagatacaa------t-tttttttgagttggggtctcactgtgtcacccaggctggagtgtagtggcgtgatcacagctcactgcaattttaaactcctgtgctccagcaatccttccttccatctcagcctcccaactagctaggattacagtgtgcaccactgtgcccagctaa-ttttttatactttttttgtagtgatgaggtcttgctatgttgccctggctggtcttgaacttcgggcctgaagcacctcagcctcccataatactgagactgtaggagtaagccaccatgcctagccctagatacaattttctaatatggctctttaatattttatttagaat-ttttttggcaatgttcatgagggatattgttctgcaggtttttg----tgttttttttttt----caaacaacatacttgtttgcttttggtatcagattagtatagtatagcttgggaagtatttcttcctattttcaggaagactttgagtagaactgttattatttcttccttaaatggtgggtagaattcaccagtgcctccatctggtcctagagttttacctgtggaaaggttgtgaa-ctacagattctatttctttaatgaatctagggccatttttattatctattacttcttgaaagagctttggaattttgcatctttcaagacatttttccattcttacacattgtttaatttactggcataatgtttctttattatcttgttgatatctgtaggaactttagatgaggccatctcattcctgatattgatcatttgtgtctttctttttcc-agatcatttgtgctagggatttacacattttgttgatcttctcaaagaaccaactttcga-tt---catcgacttttctccattgtttttggttttctgtttcgttgatttctgctattttttttcctttctgctattgttttttttttccctttctgctatta-ttttgtctataatttgctcatcttttttctaatttcttaaggtgtaagctgaggtcattgatttgaagccatggttgctttctgatataggcatttaatgctatacatttgttttaagtacatcttcagggttattcaccaatttggatgggttgcattttcatttctattcacttaaaaacactttaaaattttcattttgaatttttccttgaccataggctgtttggggccaagttgtggagtttcagaatatttggaggtttttcagatattgttctacattgacttctaatttaattccattgtatcaggcaacatgctttgagtgacatgaatccttaacatttatttagacttgttctgtggaccagaatactgtgtatcttggtaaatgctttgtgtgcacttcaaaagaatgtgtattctgctattgttgggttgaatgttctgtgtcaagtagatatttgatagtattgttcaaatttatatccttatggttttctgtctacttgtcatatcagttttgagatgggggtatttgaaattgccaactataattaaagacttgtctgtttcttcatgcagttctatcagattgttcttcatggattagaacatgagccacataaatttttttattatgacctct---tgatgaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226452372 3360 - 229942017 tactgcattggggtcaatctctttagctctaatgataattgttttatataatatatctgggtgctccagtgttgactgcatatatatttacaattgttatagtctcctgctgaattgatccctttatcattatattaatataatgaccttatttgtcactttttatgttttttggctaacattgtattttgtc-----taagtatagctactctggcacacttttggtttctattttcatggaataattttttccatccctt---------cattttcattctatgtgcatctttacaaatgaaatgcatttgttggaga--cagcatacagttgggtc-ttttttttaaa---aaataaatccattcatctcgtatatatcttttacttaaggaatttaaactgtttatattcaaggatgtcattgataggtaaggacttacttctgtgatttcattaactgttttttgatggttttgtgtatcttttgttcctttcttcctcttgtactgcttaccttgatgatttggtagtttattgtagcgatgtttgactcctttctctttctcattcgtgtatctgctctcccagtgagttttttagtcttgcgtattctcac-gtggtagttattgtccttttgcttctagatgtagaactcctttaagcatttctcacagggcctgtctagtggtggtgaattccctccattt-tttcttgtttgggaaagac-ttt-----atttttcattcatttttt-aaggatagctttCAGCAATATTTCATCTTTTTT--------------------------------------------------------------------TAAGGATAGctttcagcaatattttatag-ttttatgtacacagcttattttagtcatatctctaaatcatgtgtttgatgttgttgtaaatggtatttttaattttttttgagttggggtgacagagtgacacccaggctggattgtagaggcacagtcatagctcactgcagcctcaaattcct-------agtgatcctgctacctcagcatcctgagtagctaggattataggcacatgacatcata-ccagctaatttctttttgtatcatttttctgtagagat-ggtgtctcactatgttgaccaggctggtcttgaactcctggccttaagtgatccttctgccttggcctcccaaaatcctgggattaccggtgtgaggcaccacacccagccttacgttttcatttctaattgtttgttactatgataaagaaatgcaattgatttttgtccgttgacctcatatcctgcaaccttcctaaactcacctattagttctagtaacttttttgtggatttcatccattaga-ttttctataggtgactatatcaccaatgaagatcatttgactttctttccaatctggatatcgttcatttattgtacttgccttattgtactggctaggacttccaggacaatgttaaatggaaacggtgagagtggacatgcttgtcttgctcctaatcttagagggaaggcatttagtcttttaccgttaagtatgatgttagctatagtttttagtagataccttttattaaattgaggatattgccttctacttatacattgctgaggatttttttatcaggaatgactgaattttggtaaatgctttttctgcatctactgaaacaatcatacagttttcctttcagtttgttaatatggtaaattatattgattaggttttttt-gttaaccaaccttgcgttcctgaaataaacctcacttgctcatggtataaaaccctttgtatttgttgctagatacaaatttttt-tttttttgagttggggtctcattctgtcactcaggctggagtgcagtggcatgatcacagctcactgcaattttaaactcctgtgctcaagcaatccttccttccatctcagcctcccaactagctaggattacagtgggcaccactgtgcccaactaa-ttttttatactttttttgtagcgatgaggtcttgctatgttgccctggctggtcttgaactttgggcctcaagcacctcagcctcccataatactgagattgtaggagtaagccaccatgcctagccctagatacaattttctaatatggctctttaatattttatttagaat-tcttttggcaatgttcatgagggatattgttctgcaggtttttg----ttttgtttttttt--ttcaaacaacatatttgtttgcttttggtatcaaattagtatagtatagcgtgggaagtatttcttcctatttttaggaagactttgagtagaactgttattatttcttccttaaatggtgggtagaattcaccagtgcctccatctggtcctagagctttacctgtggaaaggttgtgaa-ctacagattctatttctttagtgaatctggggccatttttattatctattacttcttgagagagctttggaattttgcatctttcaagaaatttttccattcttacacattgtttaatttactggca-aatgtttctttattatctttttgatatctatagaaactttagatgaggccgtctcattcctgatattgatcatttgtgtctttcttcttcccagatcatttgtgctagggatttacaaattttgttgatcttctcaaagaaccaacttttga-tt---catcgacttttctccattgtttttggttttctgtttcattgatttctgctattgtgttgtttt--------------tttttttcctttctgctatta-ttttgtctataatttgctcatcttttt-ctaatttcttaaggtgtaagctgaggtcattgatttgaagccatggttgctttctgatataggcatttaatactataagtttgttttaagtacatcttcagggttattcacaaatttggatgggttgcattttcatttctattcacttaaaaagactttaaaattttcattttgaatttttccttgaccataggctgtttggggccaagttgtggagtttcagaatatttggagatttttcagatattgttctacattgacttctaatttaattccattgtatcagaaaacatgctttgagtgatatgaatccttaacatttatttagactttttctgtggaccagaatactgtgtatcttggtaaatgttttgtgtgcacttcaaaagaatgtgtattctgctattgttgggttgaatgttctgtgtcaagtagatatttgatagtattgttcaagtctatatccttatggttttctgtctacttgtcatatcaattttgtgatgggggtatttgaaattgccaactataattaaagacttgtctgcttcttcatgcagttctatcagattgttcttcatggattagaacattagccacataaatttttttattatgacctct---tgatgaa i ponAbe2.chr1 C 0 I 718 s nomLeu3.chr5 140342448 3303 - 143122389 tactgcattggggtcaatctctttagctctaatgataattgttttatataatatatctgggtgctccagtgttgactgcgtatatatttacagttgttatagtctcctgctgaattgatccctttatcattatattaatataacgaccttatttgtcactttttatgttttttggctaacactgtattttgtctgaggtaagtatagctactctggcacagttttggtttctgttttcatggaataattttttccatccctt---------cattttcattctatgtgcatctttacaaatgaaatgaatttgttggagacccagcatatagttgggtc-ttttttttttttt-aaataaatccattcatcttgtctgtatcttttagttaaggaatttaaactgtttacattcaaggacgtcattgataggtaaggacttacttctgtgattttgtaaactgttttatgatggttttgtgtatcttttgtccctttcttcctcttgtattgtttaccttgatgatttggtagtttattgtagtgatgtttgactcctttctctttctcattcatgtatctgctctcccagtgggttttttagtcttgcatattctcatggtggtagctattgtccttttgcttccagatgtagaactcccttaagcatttctcatagggcctggctagtggtgg---actttatttttca-ttcattttttaaggatagc-tttcagcaatatttcatctcttttt--aaggatagctttCAGCAATATTTCATCTCTTTT--------------------------------------------------------------------TAAGGATAGctttcagcaatattgtatagtttttatgtacac-----attttagtcatg--tctaaatcatgtgtttgatgttgttgtaaatggtatttttaattttttttgag-tggggtgac--agtgacacccaggctggattgtagaggcacagtcatagctcactgcagcctcaaattcct-------agtgatcctgccacctcagcctcctgagtagctaggattatgggcacatgacatcatacccagctgatttctttttgtatcatttttctgtagagat-ggggtctcactatgttgaccaggctggtcttgaactcctgg-ctcaagtgatccttctgccttggcctcccaaaatgctgggattaccggtgtgaggcaccacagccagccttacgttttaatttctagttgtttgttactatgataaagaaatgcaattgatttttgtccgttgacctcatatcctgcaaccttcctaaactcacctactagttctagtaacttttttgtggatttcatccattaga-ttttctataggtgactatatcaccagtgaagaccatttgacttttttcccaatctggatgttgttcatttattatacttgccttattgtattggctaggacttccagtacaatgttaaatggaaatggtgagaatggacatgcttgtcatgttcctaatcttagagggaaggcatttagttttttaccattaagtatgatattagctatagtttttagtcgataccttttattaaattgaggatattgccttctacttatatattgctgaggatttttttatcaggaatgactgaatcttggtaaatgatttttctgcatctactgaaacaatcgtatagttttcctttcagttttttaatatggtaaattatattgattaggtttttct-gttaaccaaccttgcattcctgaaataaacctcacttgctcatggtataaaaccctttgtatttgttgctagatacaa------tttttttttgagttggggtctcactctgtcacccagactggagtacagtggcatgatcacagctcactgcaattttgaactcctgggctcaagcaatccttccttccatctcagcctcccaactagctaggattacagtgtgcaccactgtgcccagctaatttttttatactttttttgtagtgatgaggtcttgctctgttgccctggctggtcttgaactttgggcctcaagcacctcagcctcccgtaatactgagattgtaggagtgagccaccatgcctagccttagatataattttctaatatggctctttaatattttatttcaaac-ttttttggcaatgttcatgagggatattgttctgcaggtt----------ttgtttttttt--ttcaagcaacatatttgtttgcttttggtatcagattagtatagcataacctgggaagtatttcttcctattttcaggaagactttgagtagaactgttattatttcttccttaaatggtgggtacaattcaccagtgcctccatctggtcctagagctttacctgtggaaaggttgtgaacctacagattctatttctttaatgaatctagggccatttttattatctgttacttcttgagtgagctttggaattttgtatctttcaagaaatttttccattcttacacattgtttaatttactggtataatgtttct-----------------------------------------------ttcctgatattgacgatttgtgtctttcttcttcccagatcatttgtgctagggatttacaaattttgttgatcttctcaaagaaccaacttttgattt---catcgacttttctccattgtttttggttttctgtttcattgatttctgctattgtgtt-------------------gctttttcctttctgctatta-ttttgtctataatttgctcatcttttt-ctaatttcttaaggtggaagctgaagtcattgatttgaagccatggttgctttctgatataggcatttaatgctataagtttgttttaagtacatcttcagggttattcacaagtttggatgggttgcattttaatttctattcacttaaaaacacttcaaaattttcattttgaatttttccttgaccataggctgtttggggccaagttgtggagtttcagaatatttggagaattttcagatattgttctacattgacttctaatttaattccattgtatcagagaacatgctttgagtgatatgaatccttaacatttatttagacttgttctgtggaccaaaatagtgtgtatcttggtaaatgttttgtgtgcacttcaaaagaatgtgtattctgctattgttgggttgaatgttctgtgtcaagtagatatttgatagtattgttcaaatctatatccttatggttttctgtctccttgtcatatcaattttgagatgggggtatttgaaattgccaactataattaaagacttgtctgtttcttcatgcagttctatcagattgttcttcatggattagaacattagccacataaatttttttattatgacctct---tgatgaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17047457 3370 - 229590362 tactgcattggagtcaatacctttagctttaataataactgttttatataatatatctgggtgctgcagtgttgagtgcatatatatttacaattgttatagtctcctgctgaattgatccctttatcattatattaatataatgaccttatttgtcactttttatgttttttggcttacactgtattttgtctgatataagtatagctactctggcacacttttggtttctgttttcatggaataattttttccatccccttgaaagctatactttcattctatgtgcatctttacaaatgaaatgcatttgttggaga--caaaatatagttgggtc-tttttttttaa---aaataaatc----catctcatctatatattttatttaaggaatttaaactgtttacattcaaggatgtcattgacaggtaaggacttacttccgttattttgcaaactgtttaatgatggttttgtatatcttttgttcctttcttcctcttttattgcttaccttgatgatttggtagttgattgtagtgatggttgactcctttctctttctcattcatgtatctgctctcccagtgagttttctagtcttgtgtattcttacagtggtagtgattgtccttttgcttccagatgtagaactcccttaagcattactcacagggcctgtctagtggtagtgaattccctccttttttttcttgtttgggatagactttt-----atttttcattcatttttt-aaggatagctttCAGCAATATTTCATCTTTTTT--------------------------------------------------------------------TAAGGATAGctttcagcaatattttatagtttttatgtatgcatcttatgttagtcatatctctaaatcatgtgtttgacgttgttgtagatggtatttttaattttttttgagttggggtgacagagtgacacctaggctggactgcagaggcacaatcatagctcactgcagcctcaaattcctaggctcaagtgat-ctgccacgtcagcctcctgagtagccaggattataggcacatgacatcatacccagctaatttctttttgtatcatttttctgtagcagtgggggtctcactatgttgaccaggctggtcttgaactcctggccttaagtgatccttctgccttggcctcccaaaatgctgggattacaggtgtgaggcaccacccccagccttacattttaatttttaattgtttgttactatgataaagaaatgcaattgagttttgtctattgacctcatatcctgcaaccttcctaaacttacctattagttctagtaacttttttgtggatttcatccattaga-ttttctataggtgactatgtcaccaatgaagaacatttgactttctttccaatctggatatcgttcatttattgtact-------------tggctaggacttccagtacaatgttaaatggaaatggtgagagtggacatccttgtcttgctcctaatcttagatggaaggcatttagtcttttaccattaagtatgatgttagctatagtttttagtagatacctcttattaaattgaggatattgccttctacttacatattgctgagga-ttttttgtcaggaatggctgaattttggtaaatgctttttctgcatctactgaaacaatcatatagttttcctttcggtttgttaatatggtaaattatattgattaggttttttt-gttaaccaaccttgcattcctgaaataaacctcacttgctcatggtataaaaccctttgtatttgttgctagacacaa----cttatttttttgagttggggtctccctctgtcacccaggctggagtgcagtggcatgatcacagcttactgcaattttaaactcctgagctcaagcgatccttccttccatctcagcctcccaagtagctaggattacagtgtgccccactctgcccacctaatttttttatacttgttttgtagtgatgaggtcttgctatgttgcccaggctggtcttgaactttgggcctcaagcacctcagcctcccataatactgagattgtaggagttagccaccatgcctggccctagatacagttttctaatatggctctttaatattttatgtagaatattttttggcaatgttcaggagggatattggtctgcagatttgtt----ttttttttttttt--tccaaacaacatatttgtttgcttttggtatcagagtagtatagtataacttggaaagtatttcttcctattttcaggaagactttgagtagaactattattatttcttccttaaatggtgggtagaattcaccagtgcctccatatggtcctagagctttacctgtggaaaagttgtgaa-ctacagattctatttctttaatgaatcta-ggccatttttattatatattacttcttgagtgagctctggaattttgtatctttcaagaaatttttccattcttatacattgtttaatttactggtgtaatgttt----attatctttttgatatctatagaaactttagattaggccatctcattcctgatattgatcatttgtgtctttcttcttcccagatcatttgtgctagggatttacaaattttgttgatcttctcagagaaccaacttttga-tttcacatcgatttttctccattgtttttggttttctgtttcattgatttctgctattgtgttgcttt--------------tttttttcctttctgctattatttttgtctataatttgctcatcttttt-ctaatttcttaaggtggaagctgaggtcattgatttgaagccatagttgctttctgatacaggcatttaatgctctaagttttgttttaacccatcttcaaggatattcacaaatttggatgggttgcattttcatttctattcactgaaaaacacttcaaaatgttcattttgaatttttccttgaccataggctgtttggggccaagttgtggagtttcagaatatttggagatttttcagatattgttctacattgacttctaatttgattccattgtatcagagaacatgctttgagtgatacgaatccttaacatttatttagacttgttctgtggaccacaatactgtgtatcttggtaaatgacttgtgtgcacttcaaaagaatgtctgttctgctattgttgggttgaatgttctgtgtcaagtagatatttgatagtattgttcaaatcgatatccttatggttttctggctacttgtcataccaattttgagatgggggtatttgaaattgccaactataattaaagatttgtctgtttcttcatgcagttctgtcagattgttcttcatggattagaacattagccacataaattttttaattgtgaccacttaataatgaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223811431 3375 - 227556264 tactgcattggagtcaatccctttagctttaataataactgttttatataatatatctgggtgctgcagtgttgagtgcatatatatttacaattgttatagtctcctgctgaattgatccctttatcattatattaatataatgaccttatttgtcactttttatgttttttggcttacactgtattttgtctgatataagtatagctactctggcacacttttggtttctgttttcatggaataattttttccatccccttgaaagctatactttcattctatgtgcatctttacaaatgaaatgcatttgttggaga--caaaatatagttgggtctttttttttttt---aaataaatc----catctcatctatatattttatttaaggaatttaaactgtttacattcaaggatgtcattgacaggtaaggacttacttccgttattttgtaaactgtttaatgatggttttgtatatcttttgttcctttcttcctcttttattgcttaccttgatgatttggtagttgattgtagtgatggttgactcctttctctttctcattcatgtatctgctctcccagtgagttttctagtcttgtgtattcttacagtggtagtgattgtccttttgcttccagatgtagaactcccttaagcattactcacagggcctgtctagtggtagtgaattccctccttttttttcttgtttgggatagactttt-----atttttcattcatttttt-aaggatagctttCAGCAATATTTCATCTTTTTT--------------------------------------------------------------------TAAGGATAGctttcagcaatattttatagtttttatgtatgcatcttatgttagtcatatctctaaatcatgtgtttgacgttgttgtagatggtatttttaattttttttgagttggggtgacagagtgacacctaggctggactgcagaggcacagtcatagctcactgcagcctcaaattcctaggctcaagtgat-ctgccacgtcagcctcctgagtagccaggattataggcacatgacatcatacccagctaatttctttttgtatcatttttctgtagcagtgggggtctcactatgttgaccaggctggtcttgaactcctggccttaagtgatccttctgccttggcctcccaaaatgctgggattacaggtgtgaggcaccacccccagccttacattttaatttttaattgtttgttactatgataaagaaatgcaattgagttttgtctattgacctcatatcctgcaaccttcctaaacttacctattagttctagtaacttttttgtggatttcatccattaga-ttttctataggtgactatgtcaccaatgaagaacatttgactttctttccaatctggatatcgttcatttattgtact-------------tggctaggacttccagtacaatgttaaatggaaatggtgagagtggacatccttgtcttgctcctaatcttagatggaaggcatttagtcttttaccattaagtatgatgttagctatagtttttagtagataccttttattaaattgaggatattgccttctacttacatattgctgagga-ttttttgtcaggaatggctgaattttggtaaatgctttttctgcatctactgaaacaatcatatagttttcctttcggtttgttaatatggtaaattatattgattaggttttttt-gttaaccaaccttgcattcctgaaataaacctcacttgctcatggtataaaaccctttgtatttgttgctagacacaa----cttatttttttgagttggggtctccctctgtcacccaggctggagtgcagtggcatgatcacagcttactgcaattttaaactcctgagcgcaagcgatccttccttccatctcagcctcccaagtagctaggattacagtgtgccccactctgcccacctaatttttttatacttgttttgtagtgatgaggtcttgctatgttgcccaggctggtcttgaactttgggcctcaagcacctcagcctcccataatactgagattgtaggagttagccaccatgcctggccctagatacagttttctaatatggctctttaatattttatgtagaatattttttggcaatgttcaggagggatattggtctgcagatttgtttttgttttgtttttttt--tccaaacaacatatttgtttgcttttggtatcagagtagtatagtataacttggaaagtatttcttcctattttcaggaagactttgagtagaactattattatttcttccttaaatggtgggtagaattcaccagtgcctccatctggtcctagagctttacctgtggaaaagttgtgaa-ctacagattctatttctttaatgaatcta-ggccatttttattatatattacttcttgagtgagctctggaattttgtatctttcaagaaatttttccattcttatacattgtttaatttactggtgtaatgttt----attatctttttgatatctatagaaactttagattaggccatctcattcctgatattgatcatttgtgtctttcttcttcccagatcatttgtgctagggatttacaaattttgttgatcttctcagagaaccaacttttga-tttcacatccatttttctccattgtttttggttttctgtttcattgatttctgctattgtgttgcttt--------------tttttttcctttctgctattatttttgtctataatttgctcatcttttt-ctaatttcttaaggtggaagctgaggtcattgatttgaagccatagttgctttctgatacaggcatttaatgctctaagttttgttttaacccatcttcagggatattcacaaatttggatgggttgcattttcatttctattcactgaaaaacacttcaaaatgttcattttgaatttttccttgaccataggctgtttggggccaagttgtggagtttcagaatatttggagatttttcagatattgttctacattgacttctaatttgattccattgtatcagagaacatgctttgagtgatacgaatccttaacatttatttagacttgttctgtggaccacaatactgtgtatcttggtaaatgacttgtgtgcacttcaaaagaatgtctgttctgctattgttgggttgaatgttctgtgtcaagtagatatttgatagtattgttcaaatcgatatccttatggttttctggctacttgtcataccaattttgagatgggggtatttgaaattgccaactataattaaagatttgtctgtttcttcatgcagttctgtcagattgttcttcatggattagaacattagccacataaattttttaattgtgaccacttaataatgaa i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82661130 3421 + 85787240 tactgcactggggtcaatccctttagctttaataataattgttttatataatgtatctgggtgctgcagtgttgagtgcgtatatatttacaattgttatagtctcctgctgaattgatccctttatcattatattaatataatgaccttatttgtcactttttatgttttttggcttacattgtattttgtctgatataagtatagctactgtggcacacttttggtttctgttttcacggaataattttttccacccacttgaaagctatactttcattctatgtgcatctttacaaatgaaatgcatttgttggaga--caaaatatagttgggtc-tttttttaaaa---aaataaatccattcatctcatctatatattttatttaaggaatttaaactgtttacattcaaggatgtcattgacaggtaaggacttacttctgtcattttgtaaactgtttaatgatggttttgtatatcttttgttcctttcttcctcttttattgcttaccttgatgatttggtagttgattgtagtgatggttgactcttttctctttctcattcatgtatctgctctcccagtgagttttctaatcttaggtattctcacggtggtagtgattgtccttttgcttccagatgtagaactcccttaagcattactcacagggcctgagtggtggtagtgaattccctccatttctttcttgtttgggatagac-ttt-----atttttcattcatttttt-aaggatagctttCAGCAATATTTCATCTTTTTTTAAGGATAGATTTCAGCAATATTTCATCTTTTTCTAAGGATAGCTTTCAGCAACATTTCATATTTTTCTAAGGATAGctttcagcaatattttatagtttttatgcacgcatcttgttttagtcatatctctaaatcatgtgtttgatgttgttgtaaatggtatttttaattttttttgagttggggtgacagagtgacacctaggctggactgcagaggcacagtcatagctcactgcaggctcaaattcctaggctcaagtgat-ctgccacatcagcctcctgagtagccaggattataggcagatgacatcatacccagctaatttctttttgtatcatttttctgtagcaat-ggggtttcactatgttgaccaggctggtcttgaactcctggccttaagcgatccttctgccttggcctcccaaaatgctgggattacaggtgtgaggcaccacacccagccttacattttaatttttaattgtttgttactatgataaagaaatgcaattgagttttgtctattgaccccatatcctgcaaccttcctaaactcacctattagttctagtaacttttttgtggatttcatccattaga-ttttctataggtgactatgtcaccaatgaagaacatttgactttctttccaatctggatatcgttcatttattgtact-------------tggctaggacttccagtacaatgttaaatggaaatggtgagagtggacatccttgtcttgctcctaatcttagagggaaggcatttagtcttttaccattaagtatgatgttagctatagtttttagtagataccgtttattaaattgaggatattgccttctacttacatattgctgagga-ttttttatcaggaatgactgaattttggtaaatgctttttctgcatctactgaaacaatc--atagttttcctttcagtttgttaatatggtaaattatattgattaggttttttt-gttaaccaaccttgcattcctgaaataaacctcacttgctcatggtataaaaccctttgtatttgttgctagacacaa----cttatttttttgagttggggtctccctctgtcacccaggctggagtgcagtggtatgatcacagctcactgcaattttaaactcctgggctcaagcaatccttccttccatctcagcctcccaagtagctaggattacagtgtgccccactctgcccacctaatttttttatacttgttttgtagtgatgaggtcttgctatgttgcccaggctggtcttgaacttcgggcctcaagcacctcagcctcccataatactgagattgtaggagtcagccgccacgcctggccctagatacagttttctaatatggctctttaatattttatgtagaaatttttttggcaatgttcaggaggtatattggtctgcagatttgtt--tggtttttttttttt--ttcaaacaacatatttgtttgcttttggtatcagagtagtatagtataacttggaaagtatttcttcctattttcaggaagactttgagtagaactattagtatttcttccttaaattgtgggtagaattcaccagtgcctccatctggtcctagagctttacctgtggaaaagttgtgaa-ctacagattctatttctttaatgaatcta-ggccatttttattatatattacttcttgagtgagctttggaattttgtatctttcaagaaatttttccattcttatacattgtttaatttgctggcgtaatgttt----attatctttttgatatctgtagaaact-----ttaggccgtctcattcctgatattgatcatttgtg----tcttcttcccagatcatttgtgctagggatttacaaattttgttgatcttctcaaagaaccaacttttga-ttt--catcgatttttctccattgtttttggttttctgtttcattgatttctgctattgtgttgc-----------------tttttttcctttctgctatca-ttttgtctataatttgctcgtcttttt-ctaatttcttaaggtggaagctgaggtcattgatttgaagccacggttgctttctgatataggcatttaatgctctaagttttgttttaacccatcttcagggatattcacaaatttggatgggttgcattttcatttctattcatttaaaaacactttaaaattttcattttgaatttttccttgaccataggctgtttggggccaagttgtggagtttcagaacatttggagatttttcagatattgttctccattgacttctaatttgattccattgtatcagagaacatgctttgagtgatacgaatgcttaacatttatttagacgtgttctgtggaccacaacactgtgcatcttggtaaatgtcttgtgtgcacctcaaaagaatgtc-gttctgctactgttgggctgaatgttctgtgtcgagtagatatttgatagtgttgttcaaatcgatgtcctcatggttttccgtctacttgtcatatcagttttgagatgggggtatttgacattgccaactataattaaagttttgtctgcttcttcatgcagttctatcggattgttcttcatggattagaacattagccacatacatttttttattatgaccact---tgatgaa i chlSab2.chr25 I 116 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=6720.000000 s hg38.chr1_KI270759v1_alt 330629 8 + 425601 ttatctca s panTro4.chr1 225086383 8 + 228333871 ttatctca i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140345751 8 - 143122389 ttatctca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17050827 8 - 229590362 ttatctca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223814806 8 - 227556264 ttatctca i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82664551 5 + 85787240 ttgtc--- i chlSab2.chr25 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e papAnu2.chr1 16855106 15458 - 220367699 I e ponAbe2.chr1 226455732 718 - 229942017 I a score=3313031.000000 s hg38.chr1_KI270759v1_alt 330637 1880 + 425601 tttctcattatagaacgtttttttttttgactctaacaacatttttcatcttcagtcttttttggcatttttaaattgtgtgtcatagttgtacata-tttttggagtacacatgatattttgatgcatgtatacaatgtgtagtgatcaaattaggaaaattgggatattcatcacctcaaacatttatctttgctttgtgttgggaatgtttattattaactatagttcttctactgtactattgaatactaaaactcattccttttatctaactgtatgtttgtacctgctaaccaatttctctttatcctaccctctgcccttcccttcccagcctctggtagccactcttctactctctatctccatgagatccactgttgtagctcccacatatgagtgacaacatgggatatttgtctttccatacctgacttatttcatttaacataatgacttccagcttcatccatgttgcttaaaatgacaggatttcattatttttatggctgaataatattccatt----------gtgtgtgtgtgtgtgtgtgtgtatctatctcacattttctttattaatttacccattgatggacacttagactgattctatattttggctattgtgaatagtgctacaataaacatggtagtgcagatacctctttgatatactgatttcttttactttggatatatactcagcagtgggattgctggatcatacagtagttctacttttaagttttttgagaaacctccagaatgttttccatgatggctgtactaatttacattcccaccaagtgtatgagcattcaccatttcctgcatcctctccagcatttgttttttgtctttttgataatagccattgtaactgaggtgagatgatagctcgttatggttttgatttgcactttcctgatgattagtgatgttgaacatcttttcacatacctcttggccacttgtgtgtcttcttctgataaatgtctattcaggtcttttgctcattttaaattggattatctggggggttttggcccattgagttgtttgaattcctcatatattctggttattaatcccttgtcaaataatttgcaaatattttctccc--attccatatgtaggttatcttttcactttgttgtttcctgttctgtgtagaagctttttagcttgatgtaatcccacttgtctatttttgcttttattgcctatgtttttgaggtcttaccccaaaaatattcgcc-----aatgtcctgtagtatctccccagtgttttctcccagcagtttcatagtttcaggtttaaatttaagtccattttgagttgattttcataatgtgataaaaaatgaagctctagtttcattcttctgcatatgaatatccagttttcccagcaccatttattaaagagattgtcttttccccaatgtatgttattggtgcctttgtcaaaaatg-----------------------------------agttggctgt-aagtgcatagatttatttctgggttttctattgtattccattggtcttctatgtgtctgtttttatgcca--gtggtatactctttgcttactatagc-ttgtagtataatttgaaatcagatagtatgatgtttccagcctggttatttttggtcagtattgatttatctactacgggttttttgtgattctataagaattttaagatttcttttttctatttctgtgaagaatgtcatgagtattttgatagggattgcagtgaatctgtagattgctttgggtagtatagacattttaataatattaattct-----tctttgagcatgggatatttttccatttatgtgctcttcaatatctttcattggtgttttataatttttcttgtagagatctttcacttct s panTro4.chr1 225086391 1882 + 228333871 tttctcattatagaacgttctttttt--gactctaacaacatttttcatcttcagtcttttttgGCATTTTAAAATTGTGTGTCatagttgtacata-tttttggagtacacatgatattttgatgcatgtatacaatgtgtagtgatcaaattaggaaaattgggatatgcatcacctcaaacatttatctttgctttgtgttgggaatgtttattattaactatagttcttctactgtactattgaatactaaaactcattccttttatctaactgtatgtttgtacctactaaccaatttctct--atcctaccctctgcccttcccttcccagcctctggtagccactcttctactctccatctccatgagatccactgttgtagctcccacatatgagtgacaacatgggatatttgtcattccatacctcacttatttcacttaacataatgacttccagcttcatccatgttgcttaaaatgacaggatttcattatttttatggctgaataatattccatt-----tgtgtgtgtgtgtgtgtgtgtgtgtgtatctatctcacattttctttattaatttacccattgatggacacttagactgattctatattttggctattgtgaatagtgctacaataaacatggtagtacagatacctctttgatatactgatttcttttactttggatatatactcagcagtgggattgctggatcatacagtagttctacttttaagttttttgagaaacctccagaatgttttccatgatggctgtactaatttacattcccaccaagtgtatgagcattcactatttcctgcatcctctccagcatttgttttttgtttttttgataatagccattgtaactgaggtgagatgatggctcgttatggttttgatttgcactttcctgatgattagtgatgttgaacattttttcacatacctcttggccacttgtatgtcttcttctgataaatgtctattcaggtcttttgctcattttaaattggattatctggggggttttggcccattgagttgtttgaattcctcatatattctggttattaatcccttgtcaaataatttgcaaatattttctccc--attccatatgtaggttatcttttcactttgttgtttcctgttctgtgtagaagctttttagcttgatgtaatcccacttgtctatttttgcttttattgcctatgtttttgaggtcttaccccaaaaatattcgcc-----aatgtcctgtagtatctccccagtgttttctcccagcagtttcatagtttcaggtttaaatttaagtccattttgagttgattttcataatgtgataaaaaatgaagctctagtttcattcttctgcatatgaatatccagttttcccagcaccatttattaaagagtttgtcttttccccaatgtatgttattggcgcctttgtcaaaaatg-----------------------------------agttggctgttaagtgcatagatttatttctgggttttctattgtattccattggtcttctatgtgtctgtttttatgcca--gtggtatactctttgcttactatagc-ttgtagtataatttgaaatcagatagtatgatgtttccagcctggttatttttggtcagtattgatttatctactacgggttttttgtgattctataagaattttaagatttcttttttctatttctgtgaagaatgtcatgagtattttgatagggattgcattgaatctgtagattgctttgggtagtatagacattttaataatattaattct-----tctttgagcatgggatatttttccatttgtgtgctcttcaatatctttcattggtgttttataatttttcttgtagagatctttcacttct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226456450 1879 - 229942017 tttctcattatagaacgttctttttt--gactctaacaacatttttcatcttcattcttttttgGCatttttaaattgtatgtcatagttgtacata-tttttggagtacacatgatattttgatgcatgtatacaatgtgtagtgatcaaattaggataattgggatattcatcacctcaaacatttatctttgctttgtgttgggaatg----ttattaactatagttcttccactgtactattgaatactaaaactcattccttttatctaactgtatgtttgtacctactaaccaatttctctttatcctaccctctgcccttcccttcccagcctctggtagccactcttctactctctctctccatgagatccacttttgtagctcccacatatgagtgacaacatgggatatttgtctttccatacctgacttatttcacttaacataatgacttccaacttcatccatgttgcttaaaatgacagaattccattatttttatggctgaataatattccatt------gtgtgtgtgtgtgtgtgtgtgtgtgtatctatctcacattttctttattcatttacccattgatggacacttaggctgattctatattttggctattgtgaatagtgctgcaataaacatgggagtgcagatacctctttgatatactgatttcttttactttggatatatactcagcagtgggattgctggatcatatggtagttctacttttaagtcttttgagaaacctccagaatgttttccatgatggctgtactaatttacattcccaccaagtgtatgagcattcaccatttcctgcatcctctccagcatttgttttttgtctttttgataatagccattgtaactgaggtgagatgatagctcattatggttttgatttgcactttcctgatgattagtgatgttgaacattttttcacatacttcttggccacttgtatgtcttcttctgataaatgtctattcaggtcttttgctcattttaaattggactgtctggggggttttggcccattgagttgtttgaattccttatatattctggttattaatcccttgacaaatagtttgcaaatattttctccc--attccatatgtaggttatcttttcactttgttgtttcctgttctgtgtagaagctttttagcttgatgtaatcccacttgtctatttttgcttttattgcctatgtttttgaggtcttaccccagaaatatttgcc-----agtgtcctatagtatctccccagtgttttctcccagcaatttcatagtttcaggtttaaatttaagtccattttgggttgattttcataatgcagtaaaaaatgaagctctagtttcattctcctgcatatgaatgtccagttttcccagcaccatttattaaagagattatcctttccccaatgtatgttattggcgcctttgtcaaaaatg-----------------------------------agttggctgt-aagtgcatagatttatttctgggttttctattgtattccattggtcttctatgtgtctgtttttatgcca--gtagtatactctttgcttattatagctttgcagtataatttgaaatcagatagtatgatgtttccagcctggttatttttggtcagtattgatttatctactatgggttttttgtgattccataagaattttaagatttcttttttctatttctgtgaagaatgtcatgagtattttgatagggattgcactgaatctgtagattgctttgggcagtatagacattttaataatattaattct-----tctatgagcatgggatatttttccatttgtgtgctcttcaatatctttcattggtgttttataattttccttgtagagatctttcacttct i ponAbe2.chr1 I 718 C 0 s nomLeu3.chr5 140345759 1914 - 143122389 tttatcattatagaaccttctttttt--gactctaacaacatttttcgtcttcagtcttttttgGCAtttttaaattgtatgtcatagttgtacata-tttttggagtacatatgatattttgatgcatgtatacaatgtgtagtgatcaaattaggataattgggatattcatcatctcaaacatttatctttgctttgggttgggaatgtttattatgaactgtagttcttctactgtactattgaatactaaaactcattccttttatctaactgtatgtttgtacctactaatcaattcctctttatcctaccctctgcccttctcttcccagcctctggtagccactcttctactctctatctccttgagatccacttttgtagctcccacttatgagtgacaacatgggatatttgtctttccatacctgacttatttcacttaacataatgacttccaagttcatccatgttgcttaaaatgacagaattccattatttttatggctgaataatattcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatcacattttctttattcatttactcattgatagacagttaggctgattctatattttggctattgtgaatagtgctgca-----------agtgcagatacctctttgatatactgatttcttttactttggatatatactcagcagtgggattgctggatcatatggtagttctacttttaagt-ttttgagaaacctccagaatgttttccatgatggctgtactaatttacattcccaccaagtgtatgagcattccccatttcctgcatcctctccagcatttgttttttgtctttttgataatagccgttgtaactgaggtgagatgatagctccttatggttttgatttgcactttcctgatgattagtgatgttgaacattttttcacatacctcttggccacttgtatgtcttcttctgacaaatgtctattcaggtcttttgctcattttaaattggattatttgggggtttttggcttactgagttgtttgaattcctcatatattctggttattaatcccttgtcaaatagtttgcaaatattttctccc--attccatatgtaggttatcttttcactttgttgtttcctgttctgtgtagaagctttttagcttgatgtaatcccacttgtctatttttgcttttattgcctatgtttttgaggtcttaccccaaaaatatttgcc-----aatgtcctgtagtatctccccagtgttttctcccagcagtttcatagtttcaggtttaaatttaagtccattttgagttgattttcataatgtggtagaagatgaagctctagtttcattcttctgcatatgaatatccagttttcccagcaccatttattaaagagattgtcctttccccgatgtatgttattggcgcctttgtcaaaaatgcatagatttatttgcataaatctatgcaaaatacacataggctgt-aagtgcatagatttatttctgggttttctattgtattccattgg---tctatgtgtctgtttttatgcca--gtactatactctttgcttactatagctttgtagtataatttgaaatcagatagtgtgatgtttccagcctggttatttttggtcagtattgatttatctaccacgggttttttgtgattccataagaattttaagatttcttttttctatttctgtgaagaatgtcatgagtattttgatagggattgcattgaatctgtagattactttgggtagtatagacattttaataatattaattcttctaatctatgagcatgggatatttttccattcgtgtgctcttcaatatctttcattggtgttttataattttccttgtagagatctttcacttct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17050835 1889 - 229590362 tttatcattatagaacattctttttt--gactctaacaacatttttcatcttcagtc-tttttgGCatttttaaattgtatatcatagttgtccata-tttttggagtacac---atattttgatgcatgtatacaatgtatagtgatcaaattaggataattgggatattcatcacttcacacattgatctttgctttgtgttgggaatgtttattattaactatagttcttctactgtcctattgaatgctaaaactcattccttttatctaactgtatgtttgtgcctactaaccaatttatctttatcctaccctctgcccttcccttcccagcctctggtacccactcttctactctctatctccatgagatccacttttgtagctcccacataagagtgacaacatgggatatttatctttccatacctgacttatttcacttaacataatgacttccaagttcatctgtgttacttaaaatgacaggattccattatttttaaggctgaataatattccatt----gtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtatcacattttctttattcatttacccactgatggacacttaggctgattctatattttggctgttgtgaacagtgctgcaataaacatgggagtgcagatacctctttgataaactgatttcttttactttggatatatactcagcagtgggattgctggatcatatggtagttctacctttaagttttttgagaaacctccagaatgttttccatgatggctgtactaatttacattcccaccaagtgtgtgagcattccccatttcctgcatcctgtccagcatttgttttttgtcattttgataatagccattgtaactgaggtgagatgatagctcattaaggttttgatttgcacttccctgatgattagtgatgctgaacattttttcacataccttttggccatttgtatatcttcttctgacgaatgtctattcaggtcttttgctcatttttaattggattatttttggggttttggcccattaagttgtttgaattcctcatatattctggttattaatcccttttcaaatagtttgcaaat-ttttctcccatattccacatgtaggttatcttttcaccttgttgtttcctgttctgtgtagaagctttttagcttgatgtaatcccacttgtctatttttgcttttattgcctatgtttttgaggtcttaccccaaaaatatttgccagacaaatgtcctgtagtatctccccagtgttttcttccagcagtttcatagtttcaggtttaaatttaagtccattttgagttgatttttataatgtggtaaaagatgaagatctagtttcactcttctgcatatgaatatccagttttcccagcaccggttattaaagagattgtcccttccccaatgagtgttattggtgcctttgtcaaaaatg-----------------------------------agttggctgt-aagtgcatggatttatttctgggttttctattgtattccattgg---tctgtgtgtctgtttttatgcca--gtactatactctttgcttactatagctttgtagtataatttgaaatcagataatgtgatgtttccagcttggttatttttggtcagtattgatttatctactgcgggtcttttgtgattccataaaaattttaagatttttcttttctatttctgtgaagaatgtcatgagtattttgatagggattgcattgaatctgtagattgctttgggtagcatagacactttaataatattaattcttctaatctatgagcatgggatatttttccatttttgtgctcttcaatatctttcattggtgttttataattttcctcatagagatctttcacttct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223814814 1889 - 227556264 tttatcattatagaacattctttttt--gactctaacaacatttttcatcttcagtc-tttttgGCAtttttaaattgtatatcatagttgtccata-tttttggagtacac---atattttgatgcatgtatacaatgtatagtgatcaaattaggataattgggatattcatcacttcacacattgatctttgctttgtgttgggaatgtttattattaactatagttcttctactgtcctattgaatgctaaaactcattccttttatctaactgtatgtttgtgcctactaaccaatttatctttatcctaccctctgcccttcccttcccagcctctggtacccactcttctactctctatctccatgagatccacttttgtagctcccacataagagtgacaacatgggatatttatctttccatacctgacttatttcacttaacataatgacttccaagttcatctgtgttacttaaaatgacaggattccattatttttaaggctgaataatattccatt----gtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtatcacattttctttattcatttacccactgatggacacttaggctgattctatattttggctgttgtgaacagtgctgcaataaacatgggagtgcagatacctctttgataaactgatttcttttactttggatatatactcagcagtgggattgctggatcatatggtagttctacctttaagttttttgagaaacctccagaatgttttccatgatggctgtactaatttacattaccaccaagtgtgtgagcattccccatttcctgcatcctgtccagcatttgttttttgtcattttgataatagccattgtaactgaggtgagatgatagctcattaaggttttgatttgcacttccctgatgattagtgatgctgaacattttttcacataccttttggccatttgtatatcttcttctgacgaatgtctattcaggtcttttgctcatttttaattggattatttttggggttttggcccattaagttgtttgaattcctcatatattctggttattaatcccttttcaaatagtttgcaaat-ttttctcccatattccacatgtaggttatcttttcaccttgttgtttcctgttctgtgtagaagctttttagcttgatgtaatcccacttgtctatttttgcttttattgcctatgtttttgaggtcttaccccaaaaatatttgccagacaaatgtcctgtagtatctccccagtgttttcttccagcagtttcatagtttcaggtttaaatttaagtccattttgagttgatttttataatgtggtaaaagatgaagatctagtttcactcttctgcatatgaatatccagttttcccagcaccggttattaaagagattgtcccttccccaatgagtgttattggtgcctttgtcaaaaatg-----------------------------------agttggctgt-aagtgcatggatttatttctgggttttctattgtattccattgg---tctgtgtgtctgtttttatgcca--gtactatactctttgcttactatagctttgtagtataatttgaaatcagataatgtgatgtttccagcttggttatttttggtcagtattgatttatctactgcgggtcttttgtgattccataaaaattttaagatttttcttttctatttctgtgaagaatgtcatgagtattttgatagggattgcattgaatctgtagattgctttgggtagcatagacactttaataatattaattcttctaatctatgagcatgggatatttttccatttttgtgctcttcaatatctttcattggcgttttacaattttcctcatagagatctttcacttct i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82664556 1846 + 85787240 --tatcattatagaacgttctttttt--gactctaataacatttttcatcttcagtc-tttttgGCAtttttaaattgtatatcatagttgtccatattttttggagtacacgtgatattgtgatggatgtatacaatgtatagtgatcaaattaggataattgggatattcatcacctcacacattgatctttgctttgtgttgggaatgtttattattaactatagttcttctactgtcctattgaatactaaaactcattcc-tttatccaactgtatgtttgtgcctactaaccaatttctctttatcctaccctctgcccttcccttcccagcctctggtacccactcttctactctctatctccatgagatccacttttgtagctcccacataagagtgacaacatgggatatttatctttccatacctgacttatttcacttaacataatgacttccaagttcatctgtgttacttaaaatgacaggattccattatttttatggctgaataatattctatt----gtgtgtgtg--------------------------tcacattttctttattcatttacccactgatggacacttaggctgattctatattttggctgttgtgaacagtgctgcaataaacatgggagtgcagatacctctttgatatactgattt-ttttactttggatatatactcagcagtggga-tgctggatcatgtggtagttctacctgtaagttttttgagaaacctccagaatgttttccatgatggctgtactaatttacattcccaccaagtgtgtgagcattccccatttcctgcatcctctccagcatttgttttttgtcattttgataatagccatggtaactgaggtgagatgatagctcattaaggttttgattttcacttccctaatgattagtgatgctgaacattttttcacataccttttggccatttgtatatcttcttctgacgaatgtctattcaggtcttttgctcatttttaattggattattttgggggttttggcccattaagttgtttgaattcctcatatattctggttattaatcccctttcaaatagtttgcaaat-ttttctcccatattccgtatgtaggttatcttttcactttgttgtttcccgttctgtgtagaagctttttagcttgatgtaatcccacttgtctatttttgcttttattgcctatgtttttgaggtcttaccccaaaaatatttgccagacaaatgtcctgtaatatctccccagtgttttcttccagcagtttcatagtttcaggtttaaatttaagtccattttgagttgatttttataatgtggtaaaagatgaagatctagtttcattcttctgcatg-gaatatccagttttcccagcaccatttattaaagagattgtcccttccccaatgtgtgttattggtgcctttgtcaaaaatg-----------------------------------agttggctgt-aagtgcatggatttatttctgggttttctattgtattccattgg---tctgtgtgtctgtttttatgccagtgtactatactctttgcttactatagctttgtagtataatttgaaatcagataatgtg-----------------atttttggtcagtattgatttatctactgcgggtcttttgtgattccataagaattttaagatttttcttttctatttctgtgaagaatgtcatgagtattttgatagggattgcattgaatctgtagatggctttgggtagcatagacactttaataacattaattcttctaatctatgagcatgggatatttttccatttttgtgctcttcaatatctttcattggcgttttataattttccttgtagagatctttcacttcT i chlSab2.chr25 C 0 I 447 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=77799.000000 s hg38.chr1_KI270759v1_alt 332517 63 + 425601 ttggttgaatttttactaggtatgtttttgtagctgt------tgtgattgctttcttgattt-cctttc s panTro4.chr1 225088273 63 + 228333871 ttggttgaatttttactaggtatgtttttgtagctgt------tgtgattgctttcttgattt-cctttc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226458329 69 - 229942017 ttggttgaatttttactaggtatgtttttgtagctgttgtaaatgtgattgctttcttgattt-cctttc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140347673 70 - 143122389 ttcgctgaatttttactaggtatgtttttgtagctattgtaaatgtgattgccttcttgatttatttttc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17052724 69 - 229590362 ttggttgaatttttactaggtatgtttttgtagctattgtaaatgtgattgctttcttgattt-ctcttt i rheMac3.chr1 C 0 I 22 s macFas5.chr1 223816703 69 - 227556264 ttggttgaatttttactaggtatgtttttgtagctattgtaaatgtgattgctttcttgattt-ctcttt i macFas5.chr1 C 0 I 1 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e chlSab2.chr25 82666402 447 + 85787240 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=13812.000000 s hg38.chr1_KI270759v1_alt 332580 34 + 425601 agattgatcacagatagcatatagaaatgttaca s panTro4.chr1 225088336 34 + 228333871 agattgatcacagatagcatatagaaatgttaca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226458398 34 - 229942017 agattgatcactgttagcatatagaaatgttact i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140347743 34 - 143122389 agattgatcactgttagcatatagaaatgttact i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223816773 18 - 227556264 --------------tagttcattgtggtgcaa-- i macFas5.chr1 I 1 I 3 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e rheMac3.chr1 17052793 22 - 229590362 I e chlSab2.chr25 82666402 447 + 85787240 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=3877114.000000 s hg38.chr1_KI270759v1_alt 332614 3084 + 425601 cattttgcgtgtttattttatatcctgcaactttattaaactcatttatcagttctaaaagttttttggtggaatctttagatttttctaaatataagatcatgtcatctacaaacaagaataatttgacttcttcctttctaatttggatgccctttatttctttctcttgccctattgtgctggctaggaattctagtactatactgaataattacagtttatagttcaccactgagcatccttttcttattccagatcttagtgaaaggttttctattttaacctattcagtatgacataagctgtgagtgtgtaatatatgacacttatcttgttgaggtatgttccttctataaatttgttgaggattttcatcacgaagggatattgaattttactgactacctttccagcatctattgaagtaattcata-tattttccttgattctgttgatgtgtgatgtattaaacttatttgacttacatatgttgaactatccttgcatcactgggatgaatcctacttgattatggtgaatggtctttttaatatattgctgtcttctgtt--tattggtattttgttgaggatttttccctctttttatcagaaatattgtcctgtagttttctt---ttgttatctttggctttggaaataaggtcagggtggccttgtagaatgagtttggaagtatttcctcctcttcaattgttaaaaatagtttgagtagaattggtattagttattctttaaatgttt-ggtagatttcagcagtaaatccatcagttccctggcttctctttgatgggagactttttattactgttccaatctattacttgttattggcctattcaggtttttatttcttcacagttgagttttggtaggttatatgtttccaggaatttttccattttttcctagattttccaatttattggcatatagttattcataatggtcgctaatgatcctttgtgtatctgtagtatcagttgtaatgtcatctttttcatctctgattttatttagttgggtcttctgttttttcttagtctaactgaaggttttaaaattttgttgcttttcaaaaaaacaaactttttattttgttggggttttttgtattgttattttagtctcaatttcatttatttctgctccatctttactcatttttttcctactaattttaggtttggtttgtttttccttttctagttcattgaggtgcaacattaggttgtttatatttggagtctatatttttaatgtaggtatttattgctatagaactttccattagtgctactttttctgtatcccgtgggttctggcatattgtatttccattttcatttgtttcaagaactttttaaacttcattcttaatttcttcattgacccattgatcatccaggagcatgttattcaatttccatatatttgaatagtttccaacatttcttgttatt----tatagttttattctgttgtggttag-aaaagatacttgatatgattttgactttttaaaacttgttgagacatgttttgtggcctatcatatggtctgtcctggagaatgttccatgtactgatgagaagaatgtgtattttgtagcagttggatcaaatgttctgtgaatatctgttaggtccctttggtctagagtatagtttaattctgaggtttctttgttgatttttctgcctgaatgatccacctattgccaaaagtgaggtgttgaagtcccttactgttattgtattgtagtctacctctcctgtttagatctactaatatttgctctctctctctctctctctctatatatatatatatataccctgctatttggttatatatattcataattgttatatcctctttcagaattgactccttgctgaattattatataacaatttcctttgtttctttatatagtttttcacttaaagtctattttatctgatcgaagtatagctagtcttgatcatttttggtttccatttgtatggaatgcttttggtttccatttgcatggaatgcttttcccatcccttcactgttagtctatgtgtgtctctataggtgaagttagtttattgtaggcaacatatacttgggtcttacttattaatccattcagccactccatgtcttttatttggagaatttagtccatatacattccatgttattattgataggtaaggccttcctactg-----------ccattttattacttattttctagttgttatatagtgtacctccttacttcctttctta-tttttgtggttaagtgattttctttgatagcatgtttt-aatttgctgcttttattttttgtttatcaattataga-tttttgctttaggttaccatgaagcttac-aaaaacatcctgtaattataacaagttatttaaaagtgataccaatttaacttttcattgtagcagaagaaaagaaacaaa-----aag--aaaaaaacacatgcattttaattcccttctgttcctacattttaaatttttgatgtcacaagatcaaaatttgcctacctcaaaaattttatagttgttatttttaatagttttgtcttttaatcttcttaataaaattttaaatggtttagatgccatgattacaatataacaatcacattagcattatttttcctatgcttttaagaacttctttagcatttatcataggctaggtctggtagtgatacgttttctctggaaaactcatctctccttcatttctgaggaataac--tgcttggtgcagtatccttggggaacattttttttttccttcagcactttgaataatatcatctcactccctcctgacctgtaaaatttctgctgagaagtctgctgccaggtgtatttgatgtccgttgtatgttatttgcttttttcttgctctctcactgtttttaggaccctctttgcctttgacctttgtgagtttaattataatatgtcttggggtcttctcacttgggttgaatctgatcggtgact----tttgacctttgtgtacctgaatatttatatttttctccaggtttggaaagtt s panTro4.chr1 225088370 3090 + 228333871 cattttgcatgtttattttatatcctgcaactttattaaactcatttatcagttctaaaagttttttggtggaatctttagatttttctaaatataagatcatgtcatctacaaacaagaataatttgacttcttcctttctaatttgtatgccctttatttctttctcttgccctattgtgctggctaggaattctagtactatactgaataattacagtttatagttcaccactgagcatccttttcttattccagatcttagtgaaaggttttctattttaacctattcagtatgacataagctgtgagtgtgtaatatatgacacttatcttgttgaggtatgttccttctataaatttgttgaggattttcatcacgaagggatattgaattttactgactacctttccagcatctatggaagtaattcata-ttttttccttgattctgttgatgtgtgatgtattaaacttatttgacttacgtatgttgaactatccttgcatcactgggatgaatcctacttgattatggtgaatggtctttttaatatattgctgtcttctgtt--tattggtattttgttgaggatttttccctctttttatcagaaatattgtcctgtagttttctt---ttgttatctttggctttggaaataaggtcagggtggccttgtagaatgagtttggaagtatttcctcctcttcaattgttaaaaatagtttgagtagaattggtattagttattctttaaatgttttggtagatttcagcagtaaatccatcagttccctggcttctctttgatgggagactttttattactgttccaatctattacttgttattggcctattcaggtttttatttcttcacagttgagttttggtaggttatatgtttccaggaatttttccattttttcctagattttccaatttattggcatatagttattcataatggtcgctaatgatcctttgtgtatctgtagtatcagttgtaatgtcatctttttcatctctgattttatttagttgggtcttctgttttttcttagtctaactgaaggttttaaaattttgttgcttttcaaaaaaacaaactttttattttgttggggttttttgtattgttattttagtctcaatttcatttatttctgctccatctttactcatttttttcctactaattttaggtttggtttgtttttccttttctagttcattgaggtgcaacattaggttgtttatatttggagtctgtatttttaatgtaggtatttattgctatagacctttctattagtgctactttttctgtatcctgtgggttctggcatattgtatttccattttcatttgtttcaagaactttttaaacttcattcttaatttcttcattgacccattgatcatccaggagcatgttattcaatttccatatatttgaatagtttccaacatttcttgttattaatttatagttttattctgttgtggttag-aaaagatacttgatatgattttgactttttaaaacttgttgagacatgttttgtggcctatgatatggtctgtcctggagaatgttccatgtactgatgagaagaatgtgtattttgtagcagttggataaaatgttctgtgaatatctgttaggtccctttggtctagagtatagtttaattctgaggtttctttgttgatttttctgcctgaatgatccacccattgccaaaagtgaggtgttgaagtcccttactgttattgtattgtagtctacctctcctgtttagatctactaatatttgctctctctctctctctctctctatatatatatata----ccctgctatttggttatatatattcataattgttatatcctctttcagaattgactccttgctgaattattatataacaatttcctttgtttctttatatagtttttcacttaaagtctattttatctgatcgaagtatagctagtcttgatcatttttggtttccatttgtatggaatgcttttggtttccatttgcatggaatgcttttcccatcccttcactgttagtctatgtgtgtctctataggtgaagttagtttattgtaggcaacatatacttgggtcttacttattaatccattcagccactccatgtcttttatttggagaatttagtccatatacattccatgttattattgataggtaaggccttcctactg-----------ccattttattacttattttctagttgttatatagtgtacctccttacttcctttctta-tttttgtggttaagtgattttctttgatagcatgtttttaatttgctgcttttattttttgtttatcaattataga-tttttgctttaggttaccatgaagcttac-aaaaacatcctgtaattataacaagttatttaaaagtgataccaatttaacttttcattgtagcagaagaaaagaaacaaatcaaaaag--aaaaaaacacatgcattttaattcccttctgttcctacatttaaaatttttgatgtcacaagatcaaaatttgcctacctcaaaaattttatagttgttatttttaatagttttgtcttttaatcttcttaataaaaatttaaatggtttagatgccatgattacaatataacaatcacattagcattatttttcctatgcttttaaaaacttctttagcatttatcgtaggctaggtctggtagtgataagttttctctggaaaactcatctctccttcatttctgaggaataac--tgcttggtgcagtatccttggggaacattttttttt-ccttcagcactttgaataatatcatctcactccctcctgacctgtaaaatttctgctgagaagtctgctgccaggtgtatttgatgtccgttgtgtgttatttgcttttttcttgctcgctcactgtttttaggaccctctttgcctttgacctttgtgagtttaattataatatgtcttggggtcttctcacttgggttgaatctgatcggtgact----tttgacctttgtgtacctggatatttatctttttctccaggtttggaaagtt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226458432 3085 - 229942017 cattttgtgtgtttattttatgtcctgcaactttattaaactcatttttcagttctaaaagttttttggtggaatctttagatttttctaagtataagatcatgtcatctacaaacaagaataatttgacttcttcctttctaatttggatgcccttcatttctttctcttgccctattgtgctggctaggaattctagtactatactgaataattacagtttatagttcaccactgagcatccttttcttattccagatcttagtaaaaggttttctattttaacctattcagtatgacataagctgtgagcgtgtcatatataacacttatcttgttgaggtatattccttctataaatttgttgaggatttttatcatgaagggatattgaattttactgactacctttccagcatctattgaagtaattcata-ttttttccttgattctgttga--tgtgatgtattaaacttatttgacttacatatgttaaactatccttgcatcactgggatgaatcctacttgattatggtgaatggtctttttaatatattgctgtcttctgtt--tattggtattttgttgaggatttttgcctctttttatcagaaatattgtcctgtagttttctt---ttgttatctttggttttggaaataaggtcaggctggccttgtagaatgagtttggaagtatttcctcctcttcaattgttaaaaatagtttaagtagaattggtattagttattctttaaatgttt-agtagatttcagcagtaaatccatcagttccctggcttctctttgatgggagactttttattactgttccaatctattacttgttattggcatattcaggtttttatttcttcacagttgagttttggtaggttatatgtttccaggaatttttccattttttcctagattttccaatttattggcatatagttattcataatggtcactaatgatcctttgtgtatctgtagtatcagttgtaatgtcatctttttcatctctgattttatttagttgggtcttctgttttttcttagtctaattgaaggttttaaaattttgttgcttttc-aaaaaacaaactttttattttgttggggttttttgtattgttattttagtctcaatttcatttatttctgctccatctttactcatttttttcctactaattttaggtttggtttgtttttccttttctagttcattgaggtgcaacattaagttgttcatatttggagtctatatttttaatgtaggtatttattgctaaagacctttccgttagtgctactttttctatatcccgtggcttctggcatgttgtatttccattttcatttgtttcaagaactttttaaacttcattcttaatttcttcattgacccattgatcatccaggagcatgttattcaatttccatgtatttgaatagtttccaacatttcttgttattaatttatagttttattctgttgtggttagaaaaagatacttgatatgattttgactttttaaaacttgttgagacatgttttgtggcctatcatatggtctgtcctggagaatgttccatgtactgatgagaagaacgtgtattttgtagcagttggataaaatgttctgtgaatatctgttaggtccatttggtctagagtatagtttaattctgaggtttctttgttgatttttctgcctgaatgatccacccattgccaaaagtgaggtgttgaagtcccttactgttattgtattgtagtctacctctcctgtttagatctactaatatttg--ctctctctctctctctctctatatatatatata----ccctgctatttggttatatatattcataattgttatatcctctttcagagttgacttcttgatgaattattatataacaatttcctttgtttctttatatagtttttcacttaaagtctattttatctgattgaagtatagctagtcttgatcatttttggtttccatttgtatggaatgcttttggtttccatttgcatggaatgcttttcccatcccttcactgttagtctatgtgtgtctctataggtgaagttagtttattgtaggcaacatatagttgggtcttacttattaatccattcagccactccatgtcttttatttggagaatttagtccatatacattccatgttattattgataggtgaggccttcctactg-----------ccattttattacttattttctagttgttatgtagtgtacctccttacttcctttctta-tttttgtggttaagtgattttctttgatagcatgtttt-aatttgctgcttttattt----tttatcaattataga-tttttgctttaggttaccatgaagcttac-aaaaacatcctgtaattataacaagttatttaaaagtgataccaatttaacttttcattgtagcagaagaaaagaaacaaatcaaaaagaaaaaaaaacgcatacattttaattcccttctgttcctacatttaaaatttttgatgtcacaaaatcaaaatttgcctacctcaaaaattttgtagttgttatttttaatagttttgtcttttaatcttcttaataaaaatataaatggtttagatgccatgtttacaatataacaatcacattagcattatttttcctatggttttaagaacttctttagtatttatcataggataggtctggtagtgataagttttctctgggaaagtcatctctccttcatttctgaggaataac--tgctcggtgcagtatccttggggaacatttttttt--ccttcagcactttgaataatatcatctcactcccttctggcctgtaaaatgtctgctgagaagtctgctgccaggtgtatttgatgtccgttgtatgttatttgcttttttctcgctctctccctgtttttaggaccctctttgcctttgacctttgtgagtttaattataatatgtcttggggtcttctcacttgggttgaatctgatcagtgacttttgtttgacctttatgtacctggatatttatatttttctccaggtttggaaagtt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140347777 3063 - 143122389 gattttgtgtgtttattttatatcctgcaactttattaaactcatttatcagttctaaaagttttttggtggaatctttagatttttctaaatataagatcatgtcatctacaaacaagaataatttgacttcttcctttctaatttggatgccctttatttctttctctagccctattgtgctggccaggaattccagtactatattgaataattacaatttatagtgcaccactgagcatccttttcttattccagatcttagtgaaaagttttctattttaacctattcagtatgacataagctgtgagcatgtcatatatgacacttatcttgttgaggtatgttccttctataaatttgttgaggatttttatcatgaagggatattgaattttactgactacctttccagcatctattgaagtaattcata-ttttttccttgattctgttga--tgtgatgtattaaatttatttgacttacatatgttgaactatccttgcatcactgggatgaatcctacttgattatggttaatggtctttttaatatattgccgtcttctgtttatattggtattttgttgaggatttttgactctttttatcagaaatattgtcttatagttttctt---ttgttatctttggctttggaaataaggtcaggctggccttgtagaatgagtttggaagtatttcctcctcttcaattgttaaaaatagtttgagtggaattggtgttagttattctttaaatgttt-ggtagatttcagcagtaaatccatcagttccctggcttctctttgacgggagactttttattactgtttcaatctattacttgttattggcctattcaggtttttatttcttcacagttgagttttggtaggttatatgtttccaggaatttatccattttttcctagattttccaatttattggcatatagttattcataatggtcgctaatgatcctttgtgtatctgtagtatcagttgtaatgtcatctttttcatctctgattttatttagttgggtcttctgttttttgttagtctaactgaagattttaaaattttgttgcttttc-aaaaaaccaactttttattttgttggggttttttgtattgttattttagtctcaatttcatttatttctgctccatctttactcatttttttcctactaattttaggtttggtttgtttttccttttctagttcactgaagtgcaacattaggttgtttatatttggagtctatatttttaatgtaggtatttattggtataggcctttcccttagtgctactttttctatattccgtgggttctggcatgttgtatttccattttcatttgtttcaagaactttttaaacttcattcttaatttcttcattgacccattggttatccaggagcatgttattcaatttccatgtatttgaatagtttccaacatttcttgttactaatttatagtttta-tctgttgtggttag-aaaagatacttgatatgattttgactttttaaaacttgttgagacatgttttgtggcctatcatatgatctgtcctggagaatgttccatgtactgatgagaagaatgtgtattttgcagcagttggataaaatgttctgtgaatatctgttaggtccatttggtctagagtatagtttaattctgaggtttatttgttgatttttcggcctgaatgatccacccattgccaaaagtgaggtgttgaagtcccttactgttgttgtattgtagtctacctctcctgtttagatctactaatatttg------------ctatatatatatatatatatata----tcctgctatttggttatatatatttataattgttatatcctctttcagaattgactccttgctgaattattttataacaatttcctttgtttctttatatagtttttcacttaaagtctattttatctgattgaagtatagctagtcttgatcatttttggtttccatttgtatggaatgcttttgttttccatttgcatggaatgcttttcccatcccttcactgttaatctatgtgtgtctctataggtgaagtgagtttattgtaggcaacatatagttgggtcttacttattaatccattcagccactccatgtcttttatttggagaatttagtccatatacattccatgttattattgataggtaaggccttcctactg-----------ccattttattacttatttcctagttgttatgtagtgtacctccttacttcctttctta-tttttgtggttaagtgattttatttggtagcatgtttt-aatttgctgcttttattttttgtatgtcaattacaga-tttctgctttaggttactatgaagcttacaaaaaacatcctgtagttataacaagttattt-aaagtgataccaattaaacttttcattgtagcagaagaaaagaaacacatcaaaaag--aaaaaaaca----cagtttaattcccttctgttccta-attttaaatttttgatgtcacaaaatcaaaatttgcctacctcaaaaattttgtagttgttatttttaatagttttgtcttttaatcttcttaataaaaatataaatggtttagatgccatgattacaatataacaatcacattagcattatttttcctatgcttttaagaacttctttagcatttatcgtaggataggtctggtagtgataagttttctctgggaaagtcatctctccttcatttctgaggaataactttgcttggtgcagtaccctcagggaacattttttttttccctcagcactttgaataatatcatctcactcccttctggcctgtaaaa---ctgctgagaagtctgctgccaggtgtatttgatgtccgttgtatgttatttgctttttactcactctctcactgtttttaggaccctgtttgcctttgacctttgtgaatt------taatatgtcttggggtcttctcacttgggttgaatctgatcggtgact----tttgacctttgtgtacctggatatttatatttttctccaggtttggaaagtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17052815 3028 - 229590362 taggttgtgtgtttattttatatcctgcaactttattaaactcatttatcagttctaaaagttttttggtggaatctttagatttttctaaatataagatcatgtcatctacaaacaagaataatttgacttcttcctttctaatttggatgccctttatttctttctcttatcctattgtgctggctaggaattccagcactatattgaataattacagtttataattcactgctgagcatccttttcttattccagatcttagtgaaaggttttctattttaacttattcagtatgacataagctgtgagcgtgtcacatatgatacttatcttgttgaggtatgttccttctataaatttgttgaggatttttatcacaaagggatgttgaattttattaactacctttccagcatctattgaagtaattcatatttttttccttgattctgttga--tgtgatgttttaaactta-ttaacttacatatgttgaactatctttgcatcacagggatgaatcctacttgattatggtaaatggtctttttaatatattgctgtcttctgtt--tattggtattttgttgaggatttttgcctctttttatcagaaacattgtcctgtagttttcttttgttgttatcattggttttggaaataaggtcaggctggccttgtggaatgagtttggaagtatttccttctcttcaattgttaaaaatagtttgagtagaattggtattagttattctttaaatgttt-ggtagatttcagcagtaaatctatcagttccctggcttctctttgatgagagactttttattactgtttcaattgattacttgttattggcctattcaggtttttatttattcacagttgagttttggtaggttgtatgtttccaggaatttatccattttttcctagattttccaatttattggcatatagttactcataatggttgctattgatcctttgtgtacctgtagtatcagttgtaatgtcatcttcttcatctctgactttatttatttgg----------------------------aggttttagaattttgttgcttttc-aaaaaacaaactttttattttgttggggtttttcata---ttattttagtctcaatttcatttatttttgctccatctttactca-tttcttcctactaattttaggtttggtttgttttt-cttttctagttcatcgaggtgcaacattaggttgtttatatttggagtctacatttttaatgtaggtatttattgctgtcgacctctcccttagtgctactttttctatatcccgtgggttctggtgtgttgtatttccattttcatttgtttcaagaactttttaaacttcattcttaatttcttcattgacctattggtcatccaggaccatgttattcaatttccatgtatttgaatagtttctagcatttcttgttattaatttatagttttattctgctgtggttac-aaaagatacttgatatgattttgactttttacagcttgttgagacatgttttgtggcctatcatatggtctgtcctggagaat-tttcatgtactgatgagaagaatgtgtattttgcagcagttgagtaaaatgttttgtgaatatctgttaggtccatttgctctagagtattgtttaattctgaggtttctttgttgatttttctgcctgaatgatccatccattgccaaaagtgaggtgttgaagttccttactgttcttgtattgtagtctacctctcctgtttagatctactaatatttg--------ctctctctatatatatacacatatata----tcctgctatttggt--catatatttgtaattgttatatcctctttcagaattgactccttgctgaattattatataataatttcctttgtttctttatgtagtttttcacttaaagtctattttatctgatcgaagtatagctagtcttgatcatttttggtttccatttgt--------------------------atggaatgcttttcccatcccttcaccgttagtctatgtgtgtctctataggcaaagtgtgtttattgtaggcaacatatagttgggtcttatttattaatccattcagccactccatgtcttttatttggagaatttagtccatatacattccatgttattattgataggtaaggccttcctactgccatttgatttccatttgattacttattttctagttgttatgtagtgtacctccttacttccttttttattttttgtggttaagtgattttctttggtagtatgtttt-aatttgctgcttttgttttttgtatatcaattatagattttttgctttaggttaccatgaagcttac-aaaaaaatcctgtaattataacaagttatttaaaagtcataccaatttaactttttattgtagcagaagaaaagaaacaaatcaaaaag--aaaaaaacacatacacgttaatttccttgtgttcctatattttaaatttttgatgtcacaaaatcaaaatttgcctacctcaaaaattttgtggttattattcttaatagttttgtcttttaatcttcttaataaaaatataaatggtttaaatgccatgattataatataacaatcacattagcattatttttcctatgcttttaagaacttctttagcatttatcatatgctaggtctggtagtgataagttttctctgagaaagtcatctctccttcatttctgaggagtaactttgctaggtgcagtatccttgggggacaatttttttc-ccttcagcactttgaataatatcatct-----cctcctggcctataaaatttctgctgggaagtctgctgccaggtgtatttgatgtctgttgtatgttatttgcttttttctcactctctcactgtttttaggaccctctttgcctttgacctttgtgagtttaattataatatgtcttggggtcttcttatttgggtttaatctgattggtgact----tttgaccttcatgtacttggatatttatatttttctctaggtttggaaagtt i rheMac3.chr1 I 22 I 296 s macFas5.chr1 223816794 3045 - 227556264 taggttgtgtgtttattttatatcctgcaactttattaaactcatttatcagttctaaaagttttttggtggaatctttagatttttctaaatataagatcatgtcatctacaaacaagaataatttgacttcttcctttctaatttggatgccctttatttctttctcttatcctattgtgctggctaggaattccagcactatattgaataattacagtttataattcactgctgagcatccttttcttattccagatcttagtgaaaggttttctattttaacttattcagtatgacataagctgtgagcgtgtcacatatgatacttatcttgttgaggtatgttccttctataaatttgttgaggatttttatcacaaagggatgttgaattttattaactacctttccagcatctattgaagtaattcatatttttttccttgattctgttga--tgtgatgttttaaactta-ttaacttacatatgttgaactatctttgcatcacagggatgaatcctacttgattatggtaaatggtctttttaatatattgctgtcttctgtt--tattggtattttgttgaggatttttgcctctttttatcagaaacattgtcctgtagttttcttttgttgttatctttggttttggaaataaggtcaggctggccttgtggaatgagtttggaagtatttccttctcttcaattgttaaaaatagtttgagtagaattggtattagttattctttaaatgttt-ggtagatttcagcagtaaatctatcagttccctggcttctctttgatgggagactttttattactgtttcaattgattacttgttattggcctattcaggtttttatttattcacagttgagttttggtaggttgtatgtttccaggaatttatccattttttcctagattttccaatttattggcatatagttactcataatggttgctattgatcctttgtgtacctgtagtatcagttgtaatgtcatcttcttcatctctgactttatttagttggatcttctgttttttcttagtctaactgaaggttttagaattttgttgcttttc-aaaaaacaaactttttattttgttggggtttttcata---ttattttagtctcaatttcatttatttttgctccatctttactca-tttcttcctactaattttaggtttggtttgttttt-cttttctagttcatcgaggtgcaacattaggttgtttatatttggagtctacatttttaatgtaggtatttattgctgtcgacctctcccttagtgctactttttctatatcccgtgggttctggtgtgttgtatttccattttcatttgtttcaagaactttttacacttcattcttaatttcttcattgacctattggtcatccaggacaatgttattcaatttccatgtatttgaatagtttctagcatttcttgttattaatttatagttttattctgctgtggttac-aaaagatacttgatatgattttgactttttacagcttgttgagacatgttttgtggcctatcatatggtctgtcctggagaat-tttcatgtactgatgagaagaatgtgtattttgcagcagttgagtaaaatgttttgtgaatatctgttaggtccatttgctctagagtattgtttaattctgaggtttctttgttgatttttctgcctgaatgatccatccattgccaaaagtgaggtgttgaagttccttactgttcttgtattgtagtctacctctcctgtttagatctactaatatttg--------ctctctctatatatatacacatatata----tcctgctatttggt--catatatttgtaattgttatatcctctttcagaattgactccttgctgaattattatataataatttcctttgtttctttatgtagtttttcacttaaagtctattttatctgatcgaagtatagctagtcttgatcatttttggtttccatttgt--------------------------atggaatgcttttcccatcccttcaccgttagtctatgtgtgtctctataggcaaagtgtgtttattgtaggcaacatatagttgggtcttatttattaatccattcagccactccatgtcttttatttggagaatttagtccatatacattccatgttattattgataggtaaggccttcctactg-----------ccatttgattacttattttctagttgttatgtagtgtacctccttacttccttttttattttttgtggttaagtgattttctttggtagtatgtttt-aatttgctgcttttgttttttgtatatcaattatagattttttgctttaggttaccacgaagcttac-aaaaaaatcctgtaattataacaagttatttaaaagtcataccaatttaactttttattgtagcagaagaaaagaaacaaatcaaaaag--aaaaaaacacatacacgttaatttccttgtgttcctatattttaaatttttgatgtcacaaaatcaaaatttgcctacctcaaaaattttgtggttattattcttaatagttttgtcttttaatcttcttaataaaaatataaatggtttaaatgccatgattacaatataacaatcacattagcattatttttcctatgcttttaagaacttctttagcatttatcatatgctaggtctggtagtgataagttttctctgagaaagtcatctctccttcatttctgaggagtaactttgctaggtgcagtatccttgggggacaatttttttc-ccttcagcactttgaataatatcatct-----ccacctggcctgtaaaatttctgctgggaagtctgctgccaggtgtatttgatgtctgttgtatgttatttgcttttttctcactctctcactgtttttaggaccctctttgcctttgacctttgtgagtttaattataatatgtcttggggtcttcttatttgggtttaatctgattggtgact----tttgaccttcatgtacttggatatttatatttttctctaggtttggaaagtt i macFas5.chr1 I 3 I 331 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I e chlSab2.chr25 82666402 447 + 85787240 I e papAnu2.chr1 16855106 15458 - 220367699 I a score=337543.000000 s hg38.chr1_KI270759v1_alt 335698 146 + 425601 ctgtgttatttctttgaataagcttgcaacttcttgtctttctcagttctctctttaattccactaacccaaatatttgctcttttgatgttggtccataggtcccataagctttgttcattccttcttattcttttttttctctt s panTro4.chr1 225091460 146 + 228333871 ctgtgttatttctttgaataagcttgcaacgtcttgtctttctcagttctctctttaattccactaacccaaatatttgctcttttgatgttggtccataggtcccataagctttgttcattccttcttattcttttttttctctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226461517 146 - 229942017 ctgtgttatttctttgaataagcttgctacctcttgtctttctcagttctctctttaactccactaacccaaatatttgctcttttgatgttggtccataggtcccataagctttgttcattccttcttattcttttttttctctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140350840 146 - 143122389 ctgtgttatttctttgaataagcttgctacctcttgtctttctcagttctctctttaactccactaacccagatatttgctcttttgatgttggtccatatgtcccatgagctttgttcattccttcttattcttttttttctctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17056139 141 - 229590362 CTGtgttatttctttgaataagcttgctacctcttgtctttctcagttctc----taactccactaacccaaatatttgcttttttgatgttggtccataggtcccaaaagctttgttcatttcttcgtc-ttttttttttctctt i rheMac3.chr1 I 296 C 0 s macFas5.chr1 223820170 141 - 227556264 ctgtgttatttctttgaataagcttgctacctcttgtctttctcagttctc----taactccactaacccaaatatttgcttttttgatgttggtccataggtcccaaaagctttgttcatttcttcgtc-ttttttttttctctt i macFas5.chr1 I 331 C 0 s papAnu2.chr1 16870564 142 - 220367699 ctgtgttatttctttgaataagcttGCTACCTCTTGTCTTTCTCAGTTCTC----TAACTCCACTAAcccaaatatttgcttttttgatgTTGGTCCATAGGTCCCaaaagctttgttcatttcttcgtctttttttttttctctt i papAnu2.chr1 I 15458 C 0 s chlSab2.chr25 82666849 146 + 85787240 ctgtgttatttctttgaataagcttgctacctcttgtctttctcagttctctctttaactccactaacccaaatatttgcttttttgatgttggtccataggtcccaaaagctttgttcatttcttcatctttttttttttctctt i chlSab2.chr25 I 447 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14365548 17487 - 49578535 I a score=1833752.000000 s hg38.chr1_KI270759v1_alt 335844 642 + 425601 ctgactgtctattttcaaatagtcttgtctttgagctcactgatcctttcttctttttgatcaattcctctgatacgctctattgca--tttttcatttcatttattgaattttttacctccagg-------------------atttctgtttaattttattttttaaatcttttctgtgaactttctctgagagatttctgtgagctttcttgaagttcactgagc------ttccttaaaactgctattttgaattatttgtctgagagatcacatattttcatcactttagggccagtcttggtgccttactttgtccctttgacatcatatttccctgaatgttcttgacgcttgaagtatgatgatatctacacattgagagattaaat----attttagtcttcctagtctggctttgtttgtgcctgtacttcttcagagggtcttccagagattctaag----ccaactgactattgtgttccct----gtgatcaccacagtaatctcagcattagaggatactctattccctggcttgctgtgagtctcacaA-----------------TGGCTTTCTGGCCCAAACGGACCTGGGGAAGACCCAATGACGGTACTTGTGTTATGTGGGAACACTGGCCACCAGGGACCTGAGTCCTGAAGACTGTCCTAGTTTCCCAGACAAGTC s panTro4.chr1 225091606 642 + 228333871 ctgactgtctgttttcaaatagtcttgtctttgagctcactgatcctttcttctttttgatcaattcctctgatacgctctattgca--tttttcgtttcatttattgaattttttacctccagg-------------------atttctgtttaattttattttttaaatcttttctgtgaactttctctgagagatttctgtgagctttcttgaagttcactgagc------ttccttaaaactgctattttgaattatttgtctgagagatcacatattttcatcactttagggccagtcttggtgccttactttgtccctttgacatcatatttccctgaatgttcttgacgcttgaagtatgatgatatctacacattgagagattaaat----attttagtcttcctagtctggctttgtttgtgcccgtacttcttcagagggtcttccagagattctaag----ccaactgactattgtgttccct----gtgatcaccacagtaatctcagcattagaggatactctattcccaggcttgctgtgagtctcacaA-----------------TGGCTTTCTGGCCCAAACGGACCTGGGGAAGACCCAATGACGGTACTTGTGTTATGTGGGAACACTGGCCACCAGGGACCTGAGTCCTGAAGACTGTCCTAGTTTCCCAGACAAGTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226461663 640 - 229942017 ctgactgtgtattttcaaatagtc-tgtctttgagctcactgatcctttcttctttttgatcaattcctctgatacgttctattgca--tttttcatttcatttattgaattttttacctccagg-------------------atttctgtttaattttattttttaaatc-tttctatgaactttctctgagagatttctgtgagctctgttgaagttcactgggc------ttccttaaaactgctattttgaattgtttgtctgagagatcacctattttcatcactttagggctggtcttggtgccttactttgtccctttgctatcatatttccctgaatgttcttgatgcttgaagtatgatgatatctatacattgagagattaaat----attttagtcttcctagtctggctttgtttgtgcctgtacttcttcagagggtcttccagagattctaag----ccaactgactattgtgttccct----gtgatcaccacagtaatctcagcattagaggatactctattcccaggcttgctgtgagtctcacaA-----------------TGGCTTTCTGGCCCAAACGGACCTGGGGAAGACCCAATGACGGTACTTGTGTTATGTGGGAACACTGGCCACCAGGGACCTGAGTCCTGCAGACTGTCCTAGTGTCCCAGACAAGTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140350986 640 - 143122389 ctgactgtgtattttcaaatagtc-tgtctttgagctcactgatcctttcttctttttgatcaattcctctgatatgctctattgca--tttttcaattcatttattgaattttttacctccagg-------------------atttctgtttaattttattttttaaatt-tttctgtgaactttctccgagacatttctctgaactttcttgaagttcactgagc------ttccttaaaactgctatttttaattatttgtctgagagatcatatattttcataactttagggccagtcttggtgccttactttgtccctttgatatcatatttccctgaatgttcttgatgcttgaagtatgatgatatctacacattgagagattaaat----attttagtcttcctagtctggctttgtttgtgcctgtgtttcttcagagggtcttccagggattctaag----ccaactgactattgtgttccct----gtgatcaccacggtcatctcagcattagaagatactctattcctaggcttgctgtgagtctcacaa-----------------tggctttctggcccaaacggacctggggaagacccaaggatggtacttgtgttatgtgggaacactggccaCCAGGGACCTGAGTCCTGAAGACTGTCCTAGTGTCCCAGACAAGTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17056280 637 - 229590362 ctgactgtgtattttcaaatagtc-tgtctttgagctcactgatcctttcttctttttgatcaattcctctgctatgctctattgca--tttttcatttcatttattgaattttttacctccagg-------------------atttcta------tttattttttaaatt-tttctctgaaatttctctgagacgtttctctgagctttcttgaggttcactgagc------ttccttaaaacta-tctttttaattatttttttgagagatcacacattttcatcactttagggccagtcttggtgccttactttgtccctttgacatcgtatttccctgaatgttcttgatgcttgaagtatgatgatagctacacattgagagattaaat----attttagtcttcctagtctggctttgtttgtgcctgcacctcttcagagggtcttccagggattctaag----cccactgactattatgttccctatctgtgatcaccacagtcatctcagcactagaggatactctattcccaggcttgttgtgagtctcacaA-----------------TGGCTTTCTGGGCCAAACGGACCTGGGGAAGATCCAAGGACAGGACTTGTGTTATGTGGGAACACTGGCCGCCAGGGACCGGAATCTTGAAGACTGTCCTAGTGTCCCAGACCAATG i rheMac3.chr1 C 0 I 43 s macFas5.chr1 223820311 637 - 227556264 ctgactgtgtattttcaaatagtc-tgtctttgagctcactgatcctttcttctttttgatcaattcctctgctatgctctattgca--tttttcatttcatttattgaattttttacctccagg-------------------atttcta------tttattttttaaatt-tttctctgaactttctctgagacgtttctctgagctttcttgaggttcactgagc------ttccttaaaacta-tctttttaattatttttttgagagatcacacattttcatcactttagggccagtcttggtgccttactttgtccctttgacatcgtatttccctgaatgttcttgatgcttgaagtatgatgatagctacacattgagagattaaat----attttagtcttcctagtctggctttgtttgtgcctgcacctcttcagagggtcttccagggattctaag----cccactgactattatgttccctatctgtgatcaccacagtcatctcagcactagaggatactctattcccaggcttgctgtgagtctcacaA-----------------TGGCTTTCTGGGCCAAACGGACCTGGGGAAGATCCAAGGACAGGACTTGTGTTATGTGGGAACACTGGCCGCCAGGGACCGGAATCTTGAAGACTGTCCTAGTGTCCCAGACCAGTG i macFas5.chr1 C 0 I 43 s papAnu2.chr1 16870706 638 - 220367699 ctgactgtgtattttcaaatagtc-tgtctttgagctcactgatcctttcttctttttgatcaATTCCTCTGCTATGctctattgca--tttttcatttcatttattgaattttttagctccagg-------------------atttcta------tttattttttaaatt-tttctctgaactttctctgagacgtttctctgagctttcttgagGTTCACTGAGC------TTCCTTAAAACtactgtttttaattatttgtttgagAGATCACACATTTTCATCACTTTAGGGCCAGTCTTGGTGCCTTACTTTGTCCCTTTGACATCGTATTTCCCTGAATGTTCTTGATGCTTGAAGTATGATGATAGCTACACAttgagatattaaat----attttagtcttcCTAGTCTGGCTTTGTTTGTGCCTGCACCTCTTCAGAGGGTCTTCCAGGGATTCTAAG----CCCACTGACTATTATGTTCCCTATCTGTGATCACCACAGTCATCTCAGCACTAGAGGATACTCTATTCCCGGGCTTGCTGTGAGTCTCACAA-----------------TGGCTTTCTGGGCCAAACGGACCTGGGGAAGATCCAAGGACAGGACTTGTGTTATGTGGGAACACTGGCCGCCAGGGACCTGAATCTTGAAGACTGTCCTAGTGTCCCAGACCAGTG i papAnu2.chr1 C 0 I 43 s chlSab2.chr25 82666995 663 + 85787240 ctgactgtgtattttcaaatagtc-tgtctttgagctcactgatcctttcttctttttgatcaattcgtctgctatgctctattgca--tttttcatttcatttattgaattttttacctatttaactttatttttttaattttatttctatttaactttattttttaaatt-tttctctgaactttctctgagacgtttctctgagctttcttgaggttcactgagc------ttccttaaaactactgtttttaagtatttgtttgagagatcacacattttcatcactttagggccagtcttggtgccttactttgtccctttgacatcatatttccctgaatgttcttgatgcttgaagtgtgatgatagctacacattgagagattaaat----attttagtcttcctagtctggctttgtttgtgcctgtaccccttcagagggtcttccagggattctaag----cccactgactattgtgttccctgtcagtgatcaccacagtcatctcagcactagaggatactctattcccaggcttgctgtgagtctcacaA-----------------TGGCTTTCTGGGCCAAACGGACCTGGGGAAGATCCAAGGACAGGACTTGTGTTATGTGGGAACACTGGCCGCCAGGGACCTGAATCTTGAAGACTCTCCTAGTGTCCCAGACCAGGA i chlSab2.chr25 C 0 I 5102 s calJac3.chr19 14383035 663 - 49578535 ctgactgtgtattttcaaatagtc-tgcctttgagctcactgatcctttcttctttttgatcaattcctctgatagtctctattgcatttttttcatttcattcattgcatattttacctccaga-------------------at-----------ttaattttttatatc-tttctgtgaactttctctgagcgatttctctgagctttctcgaagttcattgaaactattgtttcttaaaactattgtttggaattatttgtccaggagatcacacattttcatcattttagggccagtcttggtgccttaatttgtccctttgacattatatttccctgactgttc-tgatgcttgaagtgtgatgatatctgcacggtgagacattaaatattcatttgagtcttcctaatctggtttcgtttgtgcctgtacttctacagagggccttccagggattctaagtgttcattctgactattgtattccctctctgtgac--tcacagtcatgtcagcactcgaggatgctctatacccaggcttgctgtgagtctcacaAGGGCCCTGCGGTTTTTGTGGCTTTCTGGCACAAATGGACCTGGGGAAGACCCAAGGACAGTGCTTGTGTTATGTGAGAACACTAGCCACCAGGGACCTGAGTCCTGAAGACCATCCTAGTGGCTCAGACAAGTT i calJac3.chr19 I 17487 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I a score=716260.000000 s hg38.chr1_KI270759v1_alt 336486 234 + 425601 TACTTCCCAGCAGGTCTCTGCACAGGTAGGTTGTGTCCCCAACTATAGCAAGAGGGGCAGAAGTTGAGACTGGACCCCTTCAGAATCTGCTGTGGGAAGGAGGCTGATGGGCCTTTCTCATTGGCTGAGACAGGCATGTGTTACTCAGCAAGTCTCTGCACAAGTGGAGTAGTTTCTTGCCCATAACAGGAGGAGCTAAAGCCAAGACTGGGCCTCCTCAGGGTCT-GCTATAAG s panTro4.chr1 225092248 234 + 228333871 TACTTCCCAGCAGGTCTCTGCACAGGTAGGTTGTGTCCCCAACTATAGCAAGAGGGGCAGAAGTTGAGACTGGACCCCTTCAGAATCTGCTGTGGGAAGGAGGCTGATGGGCCTTTCTCATTGGCTGAGACAGGCATGTGTTACTCAGCAAGTCTCTGCACAAGTGGAGTAGTTTCTTGCCCATAACAGGAGGAGCTAAAGCCAAGACTGGGCCTCCTCAGGGTCT-GCTATAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226462303 233 - 229942017 TACTTCCCAGCAGGTCTCTGCACAGGTAGGTTGTGTCCCCAGCTATAGCAAGAGGGGCAGAAGTTGAGACTGGA-CCCTTCAGAATCTGCTGTGGGAAGGAGGCTGATGGGCCTTTCTCATTGGCTGAGACAGGCACGTGTTACTCAGCAAGTCTCTGCACAAGTGGAGTAGTTTCTTGCCCATAACAGGAGGAGCTAAAGCCAAGACTGGGCCTCCTCAGGGTCT-GCTATAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140351626 235 - 143122389 TACTTCCCAgcaggtctctgcacaggtaggttgggtccccaactatagcaagaggggtagaagttgagactggaccccttcaggatctgctgtgggaaggaggctgatgggcctttatcATTGGCTGAGACAGGCATGTGTTACTCAGCAAGTCTCTGCACAAGTGGAGTAGTTTCTTGCCCATAACAGGAGGAGCTAAAGCCAAGACTAGGCCTCCTCAGGGTCTAGCTATAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17056960 234 - 229590362 TACTTCCCTACAGGCCTCTGCACAGGTAGGCTGGGTCCCCAACCATAGCAAGAGAGGCAGAAGTTGAGACTAGACCCCTTCAGGATCTGCTGTGAGGAGGAGGCTGATGGGCCTTTCTCATTGGCTGAGACAGGCATGTGTTACTCAGCAAGTCTCTGCACAAGTGGAGTAGTTTCTTACCCATAACAGGAGGAGCTAAAGCCAAGACCAGGCCTCCTCACCATCT-GCTATAAG i rheMac3.chr1 I 43 C 0 s macFas5.chr1 223820991 234 - 227556264 TACTCCCCAGCAGGCCTCTGCACAGGTAGGCTGGGTCCCCAACCATAGCAAGAGAGGCAGAAGTTGAGACTAGACCCCTTCAGGATCTGCTGTGAGGAGGAGGCTGATGGGCCTTTCTCATTGGCTGAGACAGGCATGTGTTACTCAGCAAGTCTCTGCACAAGTGGAGTAGTTTCTTACCCATAACAGGAGGAGCTAAAGCCAAGACCAGGCCTCCTCACCATCT-GCTATAAG i macFas5.chr1 I 43 C 0 s papAnu2.chr1 16871387 234 - 220367699 TACTCCCCAGCAGGCCTCTGCACAGGTAGGCTGGGTCCCCAACTATAGCAAGAGAGGCAGAAGTTGAGACTAGACCCCTTCAGGATCTGCTGTGAGGAGGAGGCTGATGGGCCTTTCTCATTGGCTGAGACAGGCATGTGTTACTCAGCAAGTCTCTGCACAAGTGGAGTAGTTTCTTACCCATAACAGGAGGAGCTAACGCCAAGACCGGGCCTCCTCACCATCT-GCTATAAG i papAnu2.chr1 I 43 C 0 s chlSab2.chr25 82672760 234 + 85787240 TACTTCCCAGCAGGCCTCTGCACAGGTAGGCTGGGTCCCCAACTATAGCAGGAGAGGCAGAAGTTGAGACTAGACCCCTTCAGGATCTGCTGTGAGAAGGAGGCTGATGGACCTTTCTCATTGGCTGAGACAGGCATGTGTTACTCAGCAAGTCTCTGCACAAGTGGAGTAGTTTCTTACCCATAACAGGAGGAGCTAAAGCCAAGACCAGGCCTCCTCACCGTCT-GCTATAAG i chlSab2.chr25 I 5102 C 0 s calJac3.chr19 14383698 229 - 49578535 TACTTCCAAGCAGGTCTCTGCA----TAGGTTGGGTCCCCAACTATAGCAAGAGGGGCAGAAGTTGAGACTAGACCCTTTCGGAATCTGTTCTGGGAAGGAGGCTGATGGGCCTTTCTCATTGGCTGAGACAGGCACATGTTACCCAGCAAGTCTCTGTACAACTGGAGTAGTTTCTTACCCATAACAAAAGGAACTAGAGCCAAGACTGGGCCTCCTCA-GGTCT-GCTATGAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I a score=344436.000000 s hg38.chr1_KI270759v1_alt 336720 172 + 425601 ATGGAGggtggccgggtgcctgtagtcctagctactcgggaggctgaggcaggagaatggcatgaacccaggaggcagagttttcagtgagccgtgattgcaacactgcactccagcctgggggacagagcgagactccgtctcagaaaaaaaaaaaaaaaaaaaaaaaaaa s panTro4.chr1 225092482 164 + 228333871 ATGGAGGCTGGCcgggtgcctgtagtcctagctacttgggaggctgaggcaggagaatggcgtgaacccgggaagcagagttttcagtgagccgtgattgcaacactgcactccagcctgggggacagagcgagactccgtctcagaaaaaaaaaaaaaaaaGA-------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226462536 172 - 229942017 ATGGAGGCTGGCcaggtgcctgtagtcccagctacttgggaggctgaggcaggagaatggcatgaacccgggaggcagagttttcagtgagccgagattgcaacactgcactccagcctggcagacagagcgagactccgtctcaggaaaaaaaaaaaaaaaaaaaaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140351861 172 - 143122389 ATGGAGGCTGCCcgggtgcctgtagtcccagctactctggaggctgaggcaggagaatggtgtgaacccaggaggcggagcttgcagtgagccgagattgcaccactgcactccagcctggggtacagggcgagactctgtctcagaaaaaaaaaaaaaaaaaaaaaaaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17057194 157 - 229590362 ATGGAGGCTGGCcaggagcctgtagtcccagccacacaggaggctgaggcaggacaatggcgtgaacctgggaggcagagcttgcggtgagccgagattgcaccactgcactccagcctgggggacagagcgagattccgtctc-------aaaaaaaaaaGGA-------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223821225 156 - 227556264 ATGGAGGCTGGCcaggagcctgtagtcccagccacacaggaggctgaggcaggacaatggcgtgaacccgggaggcagagcttgcggtgagccgagattgcaccactgcactccagcctgggggacagagcgagattccgtctc--------aaaaaaaaaGGA-------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16871621 156 - 220367699 ATGGAGGCTGgccaggagcctgtagtcccagccacacaggaggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcggtgagccgagattgcaccactgcactccagcctgggggacagagtgagacgccgtctc--------aaaaaaaaagga-------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82672994 155 + 85787240 ATGGAGGCTGGCcaggcgcctgtagtcccagccacacaggaggctgaggcaggagaatggcgtgaacccgggaggcagagtttgcagtgagccgagattgcaccaccgcactccagtctgggcgacagagcgagactccatctc---------aaaaaaaaGGA-------- i chlSab2.chr25 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e calJac3.chr19 14383927 0 - 49578535 C a score=4789882.000000 s hg38.chr1_KI270759v1_alt 336892 1732 + 425601 a------TGGAGGCTGGCATACCTGCCACATTGGCTCAAATGGGCATGCATCTTCTAGTAAGTCCCTGCAT------AGACAGGATAGTTCCCCAACTATCAGCAGGAGGAGCTGGAGCAGAATCTGGGCCCTCATAAGATCTGCTGTGAGACAGATACTGAAGGGGTCAGTCTCAGCTCAGAGGGGTGTGTGTCACCCAGCAAGTTCCTGTAGAGATAGAATAGTTATCTGATTACAGAGAGAGGGTCTGGAGCTGTGACTGGGCCCTCTTGGGATCTGCTGTGGAATAGAAGCTGGAGAGCCCAGTCTTGT-----ATCAGAAGGCATGTCTTTCCCAGGAGGACACTGCATCAATAGGATAGTTCCACGACTGCAGCAGGAGGTGCTGTACATGCCTCTCTGCGGGTCTTAGCACAAATGGGATAGGTCTTTGACtgtcttcagtctcttttgtctaatattggtagatccactccagctcttatggttactgtttgccttatccacacttacacgtttaaatgattgtttatttctatttgaagtgtatttctc-------------------------------------aagcatatagtagagcctcac-ttttttatccaatctgacgatttttgccttttaataagggtattttagactatttcaatttcatatgattattgatatggtttggttcaaaatatta-ttttctgttttctatttgtcccatctgatctttgttctctctctctctttttt------gctttcttttggatttatg-aaacatttaaatggttccaatttccatcttctgtgggtttattagctattac-ttttattgtttaattattgcttt-agtgtttgtaatatatatgtttaagttaccacagtctaatttaaagtgatattataccacttatataaggaataaaaaccttacaatagtatacttccatttctcccgtctgacttttgtgttattgctatcaaacattttaattttacatatgtcatcattcacacgttacattatgatttttgttttaataataatcttttaaagagatttaaagtaataaaaattacatatttacccatgtggttatcatttccaaagctcttcattcctttgtctatattccttgtgtttttgcttatggtgaattcttttaggatttttaagtcaaaaaatatctttatttcccttttgttttggaatgatacttttgctgggtgtatatttctaacttgacagtttttagtactttaaaaacattgctccactgtcttctcacctg---tatttccaatgagaaatctgccgtcatccttatctttgttcctttatatgtaacgtgcttttttctctctggctcttttcaagatttttctttatatcactggttttgggcggtttggttatgatgtgccttgatatagtttcttcctttgtgcttggggctcacttagcttcttggatacatgggtttatgactttcattaaatgtggggaagttttagccattatttttctcaaatattttatttgtaccacactctgt--cttctcctttagggactccaattacacata-gcaggcacttgaagttgtcctacagc---------tcttttttttctgtgttttatttgttgt--ttt----------------ttttccctatatattttattctgaatagttttattgctagatcttcaaatttgctgatttttcattctgcaatatctaatctgccattcatctcatctac--tatatttttttt--atctcacacatt-gtagtttttatc s panTro4.chr1 225092646 1688 + 228333871 -------TGGAGGCTGGCATACCTGCCACATTGGCTCAAATGGGCATGCATCTTCTAGTAAGTCCCTGCAT------AGACAGGATAGTTCCCCAACTATCAGCAGGAGGAGCTGGAGCAGAATCTGGGCCCTCATAAGATCTGCTGTGAGACAGATACTGAAGGGGTCAGTCTCAGCTCAGAGGGGTGTGTGTCACCCAGCAAGTTCCTGTAGAGATAGAATAGTTATCTGACTACAGAGAGAGGGTCTGGAGCTGTGACTGGGCCCTCTTGGGATCTGCTGTGGAATAGAAGCTGGAGAGCCCAGTCTTGT-----ATCAGAAGGCATGTCTTTCCCAGGAGGACACTGCATCAATAGGATAGTTCCACGACTGCAGCAGGAGGTGCTGTACATGCCTCTCTGCGGGTCTTAGCACAGATGGGATAGGTCTTTGACtgtcttcagtctcttttgtctaatattggtagatccactccagctcttatggttactgtttgccttatccacacttacacgtttaaatgattgtttatttctatttgaagtgtatttctcctatgagaaatacacttctatttgaaatgtatttctcaagcacatagtagagcctcac-ttttttatccaatctgacgatttttgccttttaataagggtattttagactatttcaatttcatatgattattgatatggtttggttcaaaatatta-ttttctgttttctatttgtcccatctgatctttgttctctctcttttttttttttttttgctttcttttggatttatg-aaacatttaaatggttccaatttctgtcttctgtgggtttattagctattac-ttttattgtttaattattgcttt-agtgtttgtaatatatatgtttaagttaccacaatctaatttaaagtgatattataccacttatataaggaataaaaaccttacaatagtatacttccatttctcccctctgacttttgtgttattgctatcaaacattttaattttacatatgtcatcattcacacattacattatgatttttgttttaataataatcttttaaagagatttaaagtaataaaaattacatatttacccatgtggttatcatttccaaagctcttcattcccttgtctatattccttgtgtttttgcttatggtgaattcttttaggatttttaagtcaaaaaatatctttatttcccttttgttttggaatgatacttttgctgggtgtgtatttctaacttgacagtttttagtactttaaaaacattgctccactgtcttctcacctg---tatttccaatgagaaatctgccgt------------------------TGT------------------------------------------------------------------Gttatgatatgccttgatatagtttcttcctttgtgcttggggctcacttagcttcttggatacatgggtttatgactttcattacatgtggggaagttttagccattatttttctcaaatattttatttgtaccacactctgtgtcttctcctttagggactccaattacacata-gcagacacttgaagttgtcctacagc---------tctttttcttctgtgttttatttgttgt--ttt----------------ttttcactatatattttattctgaatagtttttttgctagatcttcaaatttgctgatttttcattctgcaatatctaatctgccattcatctcatctag--tatatctttttttaatctcacatatt-gtagtttttatc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226462708 1736 - 229942017 aaaaaGCTGGAGGCTGGCATACCTGCCACATTGGCTCAAATGGGCATGCATCTTCTAGTAAGTCCCTGCATGGACAGGGACAGGATAGTTCCCCAACTATCAGCAGGAGGAGCTGGAGCAGAATCTGGGCCCTCATAAGATCTGCTATGAGACAAATACCGAAGGGGTCAGTCTCAGCTCAGA-CGGTGTGTGTCACCCAGCAAGTTCCTGTAGAGATA------------GACTGCAGAGAGAGGGTCTGGAGCTGTGACTGGGCCCTCTTGGGATCTGCTGTGGAATAGAAGCTGCAGAGCCCAGTCTTGT-----ATCAGAAGGCGTGTCTTTCCCAGGAGGACACTGCATCAATAGGATAGTTCCACGACTGCAGCAGGAGGTGCTGGACATGCCTCTCTGCTGGTCTTAGCACAAATGGGATAGGTCTTTGACCGTCTTCagtctcttttgtctaatattggtagatccactccaactcttatggttactgtttgccttatccacacttacacgtttaaatgattgtttatttctatttgaagtgtatttctcatagg--------------------------------aagcatatagtagagcctcac-ttttttatccaatctgatgatttttgccttttaataagggtatttcagactatttcaatttcatatgattattgatatagtttggttcaaaatattacttttctgttttctatttgtcccatctgatctttgttctctctttttttttttt-----tgctttcttttggatttatt-aaacatttaaatggttccaatttctatcttctgtgggtttattagctattac-ttttattgtttaattattgcttt-agtgtttgtaatatacatgtttaagttaccacaatctaatttaaagtgatattataccacttatat-----ataaaaaccttacaatagtatacttcgatttctcccctctgacttttgtgttattgctatgaaatattttaattttacatatgtcatcattcacacattacattatgatttttgttttaataataatcttttaaagagatttaaagtaataaaaattacatatttacccctgtggttatcatttccaaagctcttcattcctttgtctatattccttgtgtttttgcttatggtgaattcttttaggatttttaagacaaaaaatatctttatttcccttttgttttggaatgatacttttgctgggtgtatatttctaacttgacagtttttagtactttaaaaacattcctccactgtcttctcacctg---tatttccaatgagaaatctgccgtcatccttatctttgttcctttatatgtaatgtgcttttttccctctggctcttttcaagatttttcttgatatcactggttttgggcagtttggttatgatatgccttgatatagtttcttcctttgtgcttggggctcacttagcttcttggatacatgggtttatgactttcattaaatgtggggaagttttagccattatttttctcaaatattttatttgtaccacactctgtgtcttctcctttagggactccaattacacata-gcggacacttgaagttgtcctacagc---------tcttttttttctgtgttttatttgttgttgttt----------------ttttccctatatattttattctgaatagttttattgctagatcttcaaatttgctgatttttcattctgcaatatctaatctgccattcgtctcatctac----tatttttttt--atctcacacattagtagtttttaTC i ponAbe2.chr1 C 0 I 1300 s nomLeu3.chr5 140352033 1734 - 143122389 aaGA---TGGAGGCTGGCATACTTGCCACATTGGCTCGAATGGGCATGCATCTTCTAGTAAGTCCCTGCAT------AGACAGGATGGTTCCCCAACTATCAGCAGGAGGAGCTGGAGCAGAATCTGGGCCCTCATAAGATCTGCTATGAGACAGATACTGAAGGGCTCAGTCTCAGCTCAGAGGGGTGTGTGTCACCCAGCAAGTTCCTGTAGAGATAGAATAGTTATCTGACTGCAGAGAGAGGGTCTGGAGCTGTGACTGGGCCCTCTTGGGATCTGCTGTGGGATAGAAGCTGGAGAGCCCAGTCTTAT-----ATCAGAAGGCGTGTCTTTCCCAGGAGGACACTGCATCAATAGGATAGTTCCACGACTGCAGCAGGAGGTGCGGGACATACCTCTCTGTGGGTCTTAGCACAAATGGGATAGGTCTTTGACTGTCTTCagtctcttttgtctaatattggtagatccactccaactcttatggttactgtttgccttatccacacttatacgtttaaatgattgtttacttctatttgaagtgtatttgtcatagg--------------------------------aagcatatagtagagcctcactttttttatccaatctgatgatttttgccttttaataagggtattttagactatttcaatttcat---attatttatatagtttggttcaaaatattacttttctgttttccatttgtcccatttgatctttg--ctctcttttttttttct------gccttcttttggatt-----aaacatttaaatggttccaatttctatcttttgtgggtttattagctattac-ttttattgtttaattattgcttt-agtgtttgtaatatacattgttaagttaccacaatttaatttaaagtgatattataccacttatataaggaataaaaaccttacaatagtacatttccatttctcccctctggcttttgtgttattgctatcaaacattttaattttacatatgtcatcattcacacattacattatgttttttgttttaataataatcttttaaagagatttaaagtaataaaaattacgtatttacccatgtggttatcatttccaaagctcttcattcctttgtctatattccttgtgtttttgcttatggtgaattcttttaggatttttaagtctaaaaatgtctttatttcccttttgttttggaatgatacttttgctgggtgtatatttctaacttgacagtttttagtactttaaaaacattgctccactgtcttctcacc-g---tatttccaatgagaaatctgccatcatccttatctttgttcctttatatgtcatgtgcttttttccctctggctcttttcaagatttttctttatatcactggttttaggcagtttggatatgctatgccttgatacagtttcttcatttgtgcttggggctcacttagcttcttggatacatgggtttatgactttcattaaatgtggggaagttttagccattatttttctcaaatattttatttgtaccacactctgtgtcttctcctttagggactccaattacacata-gcggacacttgaagttgtcctacagc---------tcttttttttctgttttttatttgttg---ttt----------------ttttccctatatattttattctgaatagttttattgctagatcttcaaatttgctgatttttcattctgcaatatctaatctgccattcgtctcatctag--tatatattttttt-atctcacacatt-gtagtttttatc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17057351 1710 - 229590362 -------TGGAGGCTGGCATACCTGCAACATTGGCTCAAATGGGCATGCATCTTCTAGTAAATCCCTGCAT------AGACAGGATAGTTCCCCAGCTATCAGCAGGAGGAGCTAGAGCAGAATCTGGGCCCCCTTGGGATCTGCTGTGGGACAGATACTGAAGGGCTCAGTCTCAGCTCAGAGGCATGTGTGTCACCCAGCAAGTTCCTGTACAGATAGAATAGTTATCTGACGGCAGAGGGAGGGTCTGGAGCTGTGACTGGGCCCCCTTGGGATCTGCTGTGGGACAGAAGCTAGAGAGCCCAGTCTTGT-----ATCTGAAGGTGTGTCTTTCCAAGGAGGACACTGCATCAATAGGATA-TTCCATGACTGCAGCAGGAGGTGCTGGACATGCCTCCCCGCAGGTCTTCGCATAAATGGGATAGGtctt----tgtcttcagtctcttttgtctaatactggtagat----tccaactctcctggttactgtttgccttatccacactcacacgtttaaactattgtttatttctatttgaagtgcatttctcatagg--------------------------------aagcatatagtagtgcctcac-ttttttatccaatctgatgatttttgccttttaataagggtattttagactatttcaatttcatgtgattattgatatcgtttggttcaaaatactacttttctgttttctgtttgtcccatctgatctttgtgctc----ttttttttct------gccttcttttggatttatt-ta----ttaaac-attctaatttctatcttttgtgggtttattagctattac-ttttattgtttcattattgcttt-agtgtttgtaacatacatgtttaagttaccacaatttaatttaaagtgatatc---ccacttatataaggaataaaaaccttataatagtatacttccatttctcccctctgacttgtgtgttattgctatcaaacattttaattttacat-----gttactcacacattacattgtgatttttgttt---taataatctttcaaagagatttaaagtaataaaaattacatatttacccatgtggttatcatttccaaagctcttccttccttcgtctgtattcctggtgtttttgcttatggtgaattcttttaggatttttaagtctaaaaatatctttatttcccttttgttttggaatgatacttttgctgggtgtatatttttaacttgacagtttttagtattttaaaaacattgctccactgtcttctcacctgtattatttccaatgagaaatctgccatcatccttgtctttgttcctttatatgtaatgtgcttttttccctctggctcttttcaagatttttctttatatcactggttttgggcagtttggttatgatatgccttgatatagtttcttcattcgtgcttggggctcacttagcttcttggatacatgggtttatga--ttcattaaatgtggggaatttttagccattatttttctcaaatgttttatttgtagcacactctgtgtcttctcctttagggaccccaataacacata-gcagacacttgaagttgtcctacagc---------tctttttttcctgttttttatttgttgttgttt----------------tttcccctgtatactttattctgaagagttttattgctagatcttcaaatttactgatttttcattctgcaatatctactctgccattcatctcatctag----tattttttt---atctcacacatt-gtagtttttatc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223821381 1710 - 227556264 -------TGGAGGCTGGCATACCTGCAACATTGGCTCAAATGGGCATGCATCTTCTAGTAAATCCCTGCAT------AGACAGGATAGTTCCCCAACTATCAGCAGGAGGAGCTAGAGCAGAATCTGGGCCCCCTTGGGATCTGCTGTGGGACAGATACTGAAGGGCTCAGTCTCAGCTCAGAGGCATGTGTGTCACCCAGCAAGTTCCTGTACAGATAGAATAGTTATCTGACGGCAGAGGGAGGGTCTGGAGCTGTGACTGGGCCCCCTTGGGATCTGCTGTGGGACAGAAGCTAGAGAGCCCAGTCTTGT-----ATCTGAAGGTGTGTCTTTCCCAGGAGGACACTGCATCAGTAGGATA-TTCCATGACTGCAGCAGGAGGTGCTGGACATGCCTCCCCGCAGGTCTTCGCATAAATGGGATAGGTCTt----tgtcttcagtctcttttgtctaatactggtagat----tccaactctcctggttactgtttgccttatccacactcacacgtttaaactattgtttatttctatttgaagtgcatttctcatagg--------------------------------aagcatatagtagtgcctcac-ttttttatccaatctgatgatttttgccttttaataagggtattttagactatttcaatttcatgtgattattgatatcgtttggttcaaaatactacttttctgttttctgtttgtcccatctgatctttgtgctc----ttttttttct------gccttcttttggatttatt-ta----ttaaac-attctaatttctatcttttgtgggtttattagctattac-ttttattgtttcattattgcttt-agtgtttgtaacatacatgtttaagttaccacaatttaatttaaagtgatatc---ccacttatataaggaataaaaaccttataatagtatacttccatttctcccctctgacttgtgtgttattgctatcaaacattttaattttacat-----gttactcacacattacattgtgatttttgttt---taataatctttcaaagagatttaaagtaataaaaattacatatttacccatgtggttatcatttccaaagctcttccttccttcgtctgtattcctggtgtttttgcttatggtgaattcttttaggatttttaagtctaaaaatatctttatttcccttttgttttggaatgatacttttgctgggtgtatatttttaacttgacagtttttagtattttaaaaacattgctccactgtcttctcacctgtattatttccaatgagaaatctgccatcatccttgtctttgttcctttatatgtaatgtgcttttttccctctggctcttttcaagatttttctttatatcactggttttgggcagtttggttatgatatgccttgatatagtttcttcattcgtgcttggggctcacttagcttcttggatacatgggtttatga--ttcattaaatgtggggaatttttagccattatttttctcaaatgttttatttgtagcacactctgtgtcttctcctttagggaccccaataacacata-gcagacacttgaagttgtcctacagc---------tctttttttcctgttttttatttgttgttgttt----------------tttcccctgtatactttattctgaatagttttattgctagatcttcaaatttgctgatttttcattctgcaatatctactctgccattcatctcatctag----tattttttt---atctcacacatt-gtagtttttatc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16871777 1711 - 220367699 -------tggaggCTGGCATACCTGCAACATTCGCTCATATGGGCATGCATCTTCTAGTAAATCCCTGCAC------AGACAGGATAGTTCCCCAACTATCAGCAGGAGGAGCTAGAGCAGAATCTGGGCCCCCTTGAGATCTGCTGTGGGACAGATACTGAAGggctcagtctcagctcagaGGGGTGTGTGTCACCCAGCAAGTTCCTGTACAGATAGAATAGTTATCTGATGGCAGAGGGAGGGTCTGGAGCTGTGACTGGGCCCCCTTGGGATCTGCTGTGGGACAAAAGCTAGAGAGCCCAGTCTTGT-----ATCTGAAGGTGTGTCTTTCCCAGGAGGACACTGCATCAGTAAGATA-TTCCATGACTGCAGCAGGAGGTGCTGGACATGCCTCCCCGCAGGTCTTCGCACAAATGGGATGGGTCTT----TGTCTTCAGTCTCTTTTGTCTAATACTGGTAGAT----TCCAACTCTCCTGGTTACTGTTTGCCTTATCCACACTCACACGTTTAAActattgtttatttctatttgaagTGCATTTCTCATAGG--------------------------------AAGC--ATAGTAGTGCCTCAC-TTTTTTATCCAATCTGacaatttttgccttttaataaGGGTATTTTAGACTATTTCAATTtcatgtgattattgatatagtttggttcaaaatattacttttctgttttctgtttgtcccaTCTGATCtttgtgctc----ttttttttct------gccttcttttggatttatt-ta----ttaaac-attctaATTTCTATCTTTTGTGGGTTTATTAGCTATTAC-TTTTATTGTTTCATTATTGCTTT-AGTGTTTGTAACATACATGTTTAAGTTACCACAATTTAATTTAAAGTGATATTATACCACTTATATAAGGAATAAAAACCTTACAATAGTATACTTCCATTTCTCCCCTCTGACTTTTGTGTTATTGctatcaaacattttaattttacat-----gttaCTCACACATTacattgtgatttttgttt---taataatcttTCAAAGagatttaaagtaataaaaattacatatttaccCATGTGGTTATCATTTCCAaagctcttccttccttcatctgtATTCCTGGTGTTTTTGCTTATGGTGaattcttttaggatttttaagtctaaaaatatctttatttcccttttgttttggAATGATACTTTTGCTGGGTGTATATTTTTAACCTGacagtttttagtattttaaaaacattgctcCACTGTCTTCTCACCTGTATTATTTCCAATGAGAAATCTGCCATCATCCTTGTCTTTGTTCCTTTATATGTAATGTGCTGTTTTCCCTCTGGctcttttcaagatttttctttatatcactGGTTTTGGGCAGTTTGGTTATGATATGCCTTGATATAGTTTCTTCATTCGTGCTTGGGGCTCACTTAGCTTCTTGAATACATGGGTTTATGA--TTCATTAAATGTGGGgaatttttagccattatttttctcaaatgttttatttgtagCACACTCTGTGTTTTCTCCTTTAGGGACCCCAATAACACATA-GCAGACACTTGAAGTTGTCCTACagc---------tctttttttcctgttttttatttgttgttgttt----------------tttcccctgTATACTTTATTCTGAATAGTTTTACTGCTAGATCTTCAAATTTGCTGATTTTTCATTCTGCAATATCTACTCTGCCATTCATCTCATCTAG----TAttttttt---ATCTCACACATT-GTAGTTTTTCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82673149 1731 + 85787240 -------TAGAGGCTGGCGTACCTGCAACATTGGCTCAAATGGGCATGCATCTTCTAGTAAATCCCTGCAT------AGACAGGATAGTTCCCCAACTATCAGCAGGAGGAGCTAGAGCAGAATCCGGGCCCTCTTGGCATCTGCTGTGGGACAGATACTGAAGGGCTCAGTCTCAGCTCAGAGGGGGGTGTGTCACCCAGCAAGTTCCTGTACAGATAGAATAGTTATCTGACTGCAGAGAGAGGGTCTGGAGCTGTGACTGGGCCCCCTTGGGATCTGCTGTGGGACAGAAGCTAGAGAGCCCAGTCTTGTATCTGATCTGAAGGTGTGTCTTTTCCAGGAGGACACTGCATCAGTAGGATG-TTCCATGACTGCAGCAGGAGGTGCTGGACATGCCTCCCCGCAGGTCTTCGCATAAATGGGACAGGTCTTTGACtgtcttcaatctcttttgtctaatactggtagattcactccaactcttatggttactgtttgtcttatccacactcacacgtttaaactattgtttatttctatttgaagtgcatttctcatggg--------------------------------aagcatatagtagtgcctcac-ttttttatccaatctgacgatttttgccttttaataagggtattttagactatttcaatttcatgtgattattgatatagtttggttcaaaatattacttttctgttttctatttgtcccatctgatctttgtgctc----ttttttttct------gccttcttttggatttattaaa----ctaaa----tccaatttctatctttggtgggtttattagctattac-ttttattgtttaattattgcttt-agtgtttgtaacatacatgtttaagttaccacaatctaatttaaagtgatattataccacttatataaggaataaaaaccttacaatagtatacttccatttctcccctctgacttttgtgttattgctatcaaacattttaattttacat-----gttactcacatattacattgtgatttttgttttaataataatcttttaaagagattgaaagtaataaaaattacatatttacccatgtggttatcatttccaaagctcttccttcctttgtctatattcctggtgtttttgcttatggtgaattcttttaggatttttaagtctaaaaatatctttattgcccttttgttttggaatgatacttttgctggatgtatatttttaacttgacagtttttagtattttaaaaacattgctcccgtgtcttctcacctgtattatttccaatgagaaatctgccatcatccttatctttgttcctttatatgtaatgtgcttttttccctctggctcttttcaagatttttctttatatcactagttatgggcagtttggttatgatatgccttgatatagtttcttcattcgtgcttggggctcacttagcttcttggatacatgggtttatga--ttcattaaatgtggggaatttttagccattatttttctcaaatgttttatttgtagcacactctctgtcttctcctttagggaccccaataacacata-gcagacacttgaagttgtcctatagc---------tctttttttcctgttttttatttgttgttgctt----------------tttcccctgtatactttattctgaatagttttattgctagatcttcaaatttgctgatttttcattctgcaatatctaatctgccattcatctcatctagaatatattttttt---atctcacacatt-gtagtttttatc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14383927 1691 - 49578535 ------ATGGAGGCTGGCATGCCTGCCACATTGGCTGAAATGGGCATGCATCTTCTAGTAAGTCCCTGCAT------AGACAGGATAGTTCCCCAACTATCAGC---CAGAACTGGAGCAGAATCCAGGCCTTCATGGGAACTGCTGTGAGACAGATATTGAAGGGCTCAGTCTTGGCTCAGAGGGGTGTGTGTCACCCAATAACTTCCTGTGCAGATAGAATAGTTACCGGACTGCAGAGAGAGGGTCTGGAGCTATGACTGGGCCTCT-------------TGGGATAGAAGCTGGAGAGCCCAGTCTTGT-----ATCTGAAGGCGTG--TTTTCCAGGAAGACACTGCATCGGTA-GATAGTTCCATGACTGCAGCACGAGATGCTGGACAGGGCTCCCTGCAGGTCTTAGCACAAATGGGCTAGTTCTTTCACTGTCTTTagtctcttttgtctaatattggtagatgcactccaactcttatggttactgtttgccttatctatacttatatgttcaagctattgtttatttatatttgaagtgcatttctcatagg--------------------------------gaacatatagtagagcctcac-tttttaatcccatctgatgatttttgccatttaataagggcattttagactatttacatttaatatgattattgatatagttttgtttgaaatattacttttctgttttctatttgtttcatctgatctttgttctc----ttttttatct------gccttcttttggatttgtt-aaacatttaaatggttccaatttctatcttttgctggtttattagctattactttttattgtttaattcttgctttaagtgttcgtaatacacgtgtttaagttaccacaatctaatttcaagtgatattatgccacttctataaggaataaaaacctt----------tcttccattcctctcctctgcctgtcatgttattgtaatcaaatgttttcattttacatat---gtcattcagacatcacactgtgatttttgttt-----------------------tttaagtaat----gctacacatttccccatgtggttgtcatttccaaagctcttcattcctctgtctgtattccTTGTGTTtttgcttatggtgaattcttttaggatttttaagtctaaagatgccttcatttcccttttgttttggaatgatacttttgctgggtgtatgtttctaacttgacagttcttactactttgaaaacatcgctccactgtattctcacctgcattatttacagcgagaaatctgccatcatccttatctttgttcctttatatgtaatgtgctttttttcctgtggcttttttcaagatttgtctttacatcactggttttgagcagtttggttataatatggcttgatgtagtttatttatttgtgcttggggctcacttagctttttgaatacatggatttatgactttcattaaatgtgggaaatttttagccattatttttctcaaatgttttatttgtatcatactctgtgtcttctccgttagggactccagttacacatatttggacacttaaagttgccctacagctattttttttctttttttgctgttttttatttgtgggttttttgttttgtttttcaaattttccctgtatattttattctgaataattttattgctg-----------tt-----ttttgcattctgtgatatctaatctgccattaatctcatttag----tgttttttt---atctcaaatatt-gtaggttttatc i calJac3.chr19 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I a score=29288.000000 s hg38.chr1_KI270759v1_alt 338624 11 + 425601 tctagaggttc s panTro4.chr1 225094334 11 + 228333871 tctagaggttc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140353767 11 - 143122389 tctagaggttc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17059061 11 - 229590362 tctagaggttc i rheMac3.chr1 C 0 I 233 s macFas5.chr1 223823091 11 - 227556264 tctagaggttc i macFas5.chr1 C 0 I 248 s papAnu2.chr1 16873488 11 - 220367699 TCTAGAGGTTc i papAnu2.chr1 C 0 I 246 s chlSab2.chr25 82674880 11 + 85787240 tctagaggttc i chlSab2.chr25 C 0 I 242 s calJac3.chr19 14385618 11 - 49578535 tctagaggttc i calJac3.chr19 C 0 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e ponAbe2.chr1 226464444 1300 - 229942017 I a score=1532959.000000 s hg38.chr1_KI270759v1_alt 338635 694 + 425601 agttttgtgtctttttaaatatatattccatgtttctacttaactttttgaacatctgaaatacagttgaaataactgttttaataaatagctgcttctgtcaattctaacatctatgctag--------ttctaggttggtttcagttatctcttcattatgggtttcattttcccgagtcttt------------------------------------------------actttgtaaat--------------------------------------------------------------------------attcttaagctttgttttagaatgcagttgcattacttggaaacagtttgatca-tttt------tttgttttgcttttaatatgtgttaggtgggatcaggtcagtgttcagtctgtggctaagtatgggaaagacttctgggtattcaacccaatgccctgtgaattgtgaagttttccaggctggctgttaggaagtggcactattcctggctttgtgtgagtgctgtgcaccatt-----atctccaatctttttaggtagttaatttctgagccttg--aatagttttctcacatgaatgttgtgttag-tcccttttgcattgctgtaaaa-aacacctgaggctgggtgatttataaagaggct--------tattctgctcacagttctgcaagctatacaagaagcatggcacccagcatctgcttctggtgaggactcaggaagcttacgatgatggtggaaggtgaaaggagagtaggcgtgtcacatggc------------------------------------aagagagagcaggagagagaagggggaa s panTro4.chr1 225094345 703 + 228333871 agttttgtgtctttttaaatatatattccatgtttctacttaactttttgaacatctgaaatacagttgaaataactgttttaataaatagctgcttctgtcaattctaacatctatgctag--------ttctaggttggtttcagttatctcttcattatgggtttcattttcccgagtcttt------------------------------------------------actttgtaaat--------------------------------------------------------------------------attcttaagctttgttttagaatgcagttgcattacttggaaacagtttgatca-tttt------tttgttttgcttttaatatgtgttaggtgggatcaggtcagtgttcagtctgtggctaagtatgggaaagacttctgggtattcaacccaatgccctgtgaatcgtgaagttttccaggctggctgttaggaagtggcactattcctggctttgtgtgagtgctgtgcaccatt-----atctccaatctttttaggtagttaatttctgagccttg--aatagttttctcacatgaatgttgtgttacctcccttttgcattgctgtaaaa-gatacctgaggctgggtgatttataaagaggctgggtgatttattctgctcatagttctgcaagctatacaagaagcatggcacccagcatctgcttctggtgaggcctcgggaagcttacgatgatggcggaaggtgaaaggagagtaggcgtgtcacatggc------------------------------------aagagagagcaggagagagaagggggaa i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140353778 694 - 143122389 agttttgtgtctttttaaatatatattccatgtttctacttaactttttgaacatctgaaatacagttgaaataactgttttaataaatagctgcttctgtcaattctaacatctatgctag--------ttctaggttggcttcaattatctcttcattatgggtttcattttcctgagtcttt------------------------------------------------actttgtaaat--------------------------------------------------------------------------attcttcagctttgttttagaatgcagttgcgttacttggaaacagtttgatca-tttt------tttgttttgcttttaatacgtgttaggtgggatcaggtcactgctcagtctgtggctaagtatgggaaagacttctgggtactcaacccaatgccctgtgaattgtgaagttttccaggctggctgttaggaagcggcactattcctggctttgtgtgagtgctctgcaccatt-----atctccaatctttttaggtggctaatttctgagccttg--aatagttttctcacatgaatgttgtgttag-tcccttttgcattgctgtaaaaggatacctgaggctgggtgatttataaagaggct--------tattcttctcacagttctgcaagctatacaagaagaatggca-ccagcatctgcttctggtgaggcctcaggaagcttacgatgatggtggaaggtgaaaggagagtaggcaggtcacatggc------------------------------------aagagagagcaggagagagaagggggaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17059305 773 - 229590362 agttttgtgtctttttaaatatatattccatgtttctacttaactttttgaacgtctgaaatacagatgaaataactgttttaataaatagctgcttctgtcaattctaacatctctgctaa--------ttctaagttggtttcaatgatctcttcattatgggtttcattttcccaagtcttt------------------------------------------------actttgtaaatattcttaagctttgttttagaatgcagttgtgttagttatgggtttcattttcccaagtcttcactttgcaaatattctccagctttgttttagaatgcagttgtgttacttggaaagagtttgatcattttt------tttgttttgcttttaatatgtgttagatgggatcaggtcagtgttcagtctgtggctaagtatggaaaatacttctgggtgttcaacccgatgccccgtgaatcgtgaagttttccaggctggctgttaggaagtagcacgattcctggctttgtgaataatatatgtaaaattaaacgatctccaatcttcttaagtggttaatttctgagccttg--aatagttttctcacatgaatgttgtgttag-tcccttttgcattgctgtaacaggatacctgaggct-ggtgatttataaagaggct--------tattctgctcacagttctgcaagctatataagaagcatggcc-ccagcatctgcttctggtgaggcctcaggacgctgacgatgatggtggaaggtgaaaggagagccggcatgtcacatggc------------------------------------aggagagagcaggagagagaagggggca i rheMac3.chr1 I 233 C 0 s macFas5.chr1 223823350 699 - 227556264 AGTtttgtgtctttttaaatatatattccatgtttctacttaactttttgaacgtctgaaatacagatgaaataactgttttaataaatagctgcttctgtcaattctaacatctctgctaa--------ttctaagttggtttcaatgatctcttcattatgggtttcattttcccaagtcttt------------------------------------------------actttgtaaat--------------------------------------------------------------------------attctccagctttgttttagaatgcagttgtgttacttggaaagagtttgatcattttt------tttgttttgcttttaatatgtgttagatgggatcaggtcagtgttcagtctgtggctaagtatggaaaatacttctgggtgttcaacccgatgccccatgaatcgtgaagttttccaggctggctgttaggaagtagcacgattcctggctttgtgaataatatatgtaaaattaaacgatctccaatcttcttaagtggttaatttctgagccttg--aatagttttctcacatgaatgttgtgttag-tcccttttgcattgctgtaacaggatacctgaggct-ggtgatttataaagaggct--------tattctgctcacagttctgcaagctatataagaagcatggcc-ccagcatctgcttctggtgaggcctcaggacgctgacgatgatggtggaaggtgaaaggagagccggcatgtcacatggc------------------------------------aggagagagcaggagagagaagggggca i macFas5.chr1 I 248 C 0 s papAnu2.chr1 16873745 700 - 220367699 agttttgtgtctttttaaatatatattccatgtttctacttaactttttgaacgtctgaaatacagatgaaataacTGTTTTAATAAATAGCTGCTTCTGTCAATTCTAACATCTATGCTAA--------TTCTAAGTTGGTTTCAATGATCTCTTCATTATGGGTTTCATTTTCCCGAGTCTTT------------------------------------------------ACTTTGTAAAT--------------------------------------------------------------------------ATTCTTAAGCTTTGTTTTAGAATGCAGTTGtgttacttggaaacagtttgatcattttt------tttgttttgcttttaatatgtGTTAGATGGGATCAGGTCAGTGCTCAGTCTGTGGCTAAGTATGGAAAATACTTCTGGGTGTTCAACCCGATGCCCCGTGAATCGTGAAGTTTTCCAGGCTGGCTGTTAGGAAGTGGCATGATTCCTGGCTTTgtgaataatatatgtaaaattaaatgatctCCAATCTTCTTAAGTGGTTAATTTCTGAGCCTTG--AATAGTTTTCTCACATGAATGTTGTGTTAG-TCCCTTTTGCATTGCTGTAACAggatacctgaggctgggtgatttataaagaggCT--------TATtctgctcacagttctgcaagctatATAAGAAGCATGgcc-ccagcatctgcttctggtgaggcctcaggatgCTGACGatgatggtggaaggtgaaaggagaGCCGGCATGTCACACGGc------------------------------------aggagagagcaggagagagaagggggca i papAnu2.chr1 I 246 C 0 s chlSab2.chr25 82675133 700 + 85787240 AGTtttgtgtctttttaaatatatattccatgtttctgcttaactttttgaacgtctgaaatacagatgaaataactgttttaataaatagctgcttctgtcaattctaacatctatgctaa--------ttctaagttggtttcaatgatctcttcattatgggtttcattttcccgagtcttt------------------------------------------------actttgtaaat--------------------------------------------------------------------------attcttaagctttgttttagaatgcagatgtgttacttggaaacagtttgatcattttt------tttgttttgcttttaatatgtgttagatgggatcaagtcagtgctcagtctgtggctaagtatggaaaatacttctgggtgttcgacccgatgccctgtgaatcgtgaagttttccaggctggctgttaggaagtggcacgattcctggctttgtgAATAACATATGTAAAATTAAAAGATCTCCAGTCTTCTTAAGTGGTCAATGTCTGAGCCTTG--AATAGTTTTCTCACATGAATGTtgtgttag-tcccttttgcattgctgtaaaaggatacttgaggctgggtgatttataaagaggct--------tattctggtcacagctctgcaaactatacaagaaacatggca-ccagcatctgcttctggtgaggcctcaggacgctgacgatgatggtggaaggtgaaaggagagccggcatgtcacacggc------------------------------------aggagagagcaggagagagaagggggca i chlSab2.chr25 I 242 C 0 s calJac3.chr19 14385629 795 - 49578535 agttttgtgtctttttaaatatatattacatgtttctacttcactttttgaacatttgaaatacaattggaataactgttttactaaatagctgtttctgtcaattctaacgtctatgctagatgttggttggttggttggtttcaactatctcttcgttatgggtctcactttcctaagtctttccatgcctggttggttttcattgagtgttgagggctggatatctttgcactttgtaaat--------------------------------------------------------------------------attcttaagctttgtttcaggatgtagttgcattacttggaaacagtttgatcaatttttatttgtttgttttgcttttaatatgtgttaggtgggatcgggtcagtgctcagtctgtggctaagtatgcgaaatacgtctgggtattcaacccaatgccctgtgaatgctgaagttttccagactgcctgttaggaagtggcactattcctggcttcatgtgaatgctgtgcagcatg-----atctccagtctttttaggtggctaacttctgagccttgaaaatagttttctcacatgaatgttgtgttag-taccttttgcattgctataaaagaacacctggggccgggtaatttctaaagaggtt--------tgttttgctcatagttctgcgggcgatgcaagaagcgtggca-ccagcatctgcttctggtgaggcctcaggaagcttatgacgatggtggaaggtgaaaggagagaaggcaggtcacatggcgagagagcgagagagagagagagagagagagagagagagagagagcaggagagaaagcagggaa i calJac3.chr19 C 0 I 309 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e ponAbe2.chr1 226464444 1300 - 229942017 I a score=935234.000000 s hg38.chr1_KI270759v1_alt 339329 400 + 425601 ggtgccagcatcttttaaacaactagcttttgcatgaagttaaagagcaagaactcactcattaccatgggaagggcactaagctgttcatgagggatccacccccaagacccaaacacctcccaccaggccccatctccaacactgaagatcacacttcaacacgaCGCCtgtgattctcagtgttggaacctgctgggaggtgtttgggtcatgggggtggaCGACAcatctccaacattgaggatcacatttcaacatgagatttggaggacacaaacatccaaactacatcaGGtgtgctgatcagtactcagctgaacacttgagggaccttctgcaaatctctagagctctctcctctgcagtactctgtcttgtaaattgttgccaccttggt s panTro4.chr1 225095048 400 + 228333871 ggtgccagcctcttttaaacaactagcttttgcatgaagttaaagagcaagaactcactcattaccatgggaagggcactaagctgttcatgagggatccacccccaagacccaaacacctcccaccaggccccatctccaacactgaagatcacacttcaacacgaCGCCtgtgattctcagtgttggaacctgctgggaggtgtttgggtcatgggggtggatGACAcatctccaacattgaggatcacatttcaacatgagatttggaggacacaaacatccaaactacatcaGGtgtgctgatcagtactcagctgaacccttgagggaccttctgcaaatctctagagttctctcctctgcagtactctgtcttgtaaattgttgccaccttggt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140354472 400 - 143122389 ggtgccagcctcttctaaacaactagcttttgcatgaagttaaagagcaagaactcactcattaccatgggaagggcactaagctgttcgtgagggatctacccccaagacccaaacacctcccaccaggccccatctccaacactaaggatcacacttcaacacgaCGCCtgtgattctcagtgttggaacctgctgggaggtgtttgggtcataggggtggaCGAcccatttccaacattgaggatcacatttcaccatgagatctggagggcacgaacatacaaactacatcaGatgtgctgatcagtactcagctgaacccttgagggaccttctgcaaatctctagagttctctcctctgcagtactctgtcttgtaaattgttgccaccttggt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17060078 400 - 229590362 ggtgccagcctcttttaaacaactagcttttgcatgaagttaaagagcaagaactcactcattaccatgggaagggcactaagctgttcacgagggttccacccccaagacccaaacacctcccaccaggccccatctccaacactgaggatcacatttcaacaCCAGGCCtgtgattctcagtgctggaacctgctgggaggtgttcaggtcatgggggtggaCAAcccatctccaccattgaggatcacatttcaacatgagatttggagcacacagacatccaaactatatcaGatgtgctgaccagcactcagttgaacccttgacggaccttctgcaaatctctagagttctttcctctgctgtactctgtcttgtaaattgttgccaccttggt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223824049 400 - 227556264 ggtgccagcctcttttaaacaactagcttttgcatgaagttaaagagcaagaactcactcattaccatgggaagggcactaagctgttcacgagggttccacccccaagacccaaacacctcccaccaggccccatctccaacactgaggatcacatttcaacaCCAGGCCtgtgattctcagtgctggaacctgctgggaggtgttcaggtcatgggggtggaCAAcccatctccaccattgaggatcacatttcaacatgagatttggagcacacagacatccaaactatatcaGatgtgctgaccagcactcagttgaacccttgacggaccttctgcaaatctctagagttctttcctctgctgtactctgtcttgtaaattgttgccaccttggt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16874445 400 - 220367699 GGTGCCAGcctcttttaaacaactagctTTTGCATGAAGTTaaagagcaagaactcactcattatcatgggAAGGGCACTAAGCTGTTCACGAGGGTTCCACCCCcaagacccaaacacctcccaccaggccccatctccaacactgaggatcacatttcaacaccaGGCCTGTGATTCTCAGTGCTGGAACCTGCTGGGAGGTGTTCAGGTCATGGGGGTGGACAACCCATCTCCACCAttgaggatcacatttcaacatgagatttggagcacacacacatccaaactatatcagatgtGCTGACCAGCACTCAGTTGAACTCTTGACGGACCTTCTGCAAATCTCTAGAGTTCTTTCCTCTGCTGTAGTCTGTCTTGTAAATTGTTGCCACCTTGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82675833 400 + 85787240 ggtgccagcctcttttaaacaactagcttttgcaagaagttaaagagcaagaactcactcattaccatgggaaggacactaagctgttcacgagggttccacccccgagacccaaacacctcccaccaggccccgtctccaacactggggatcacatttcaacaCCAGGCCtgtgattctcagtgctggaacctgctgggaggtgtttgggccatgggggtggaCAAcccatctccaccattgaggatcacatttcaacatgagatttggagcacacagacatccaaactatatcaGatgtgctgaccagcactcagttgaacccttgacggaccttctgcaaatctctagagttctttcctctgcagtactctgtcttgtaaattgtcgccaccttggt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14386733 396 - 49578535 ggcgacagcctcttttaaacaaccagcttttgcatgaacttgaagagcaagaactcactcattaccatgggaagggcaccaag-tattcatgagggatccacccccaagactcaagcatctcccaccaggccccatctccaacactgaggatcacatttcaacataaggcctgtg-tcctcagtgttggaacctggtgggaggtgtttgggtgatggaggtgaatggctcatctccaacactgagggtcacatttcaacaggagatttggaggacacggacgtctaaactgtatcaGatgtgctgcccagtactcagctg-accctcgaggg-cctcccgctgatctctggagttctctcctcggcagcactctgtcctgtaaattgttaacaccttggt i calJac3.chr19 I 309 C 0 e mm10.chr1 178881543 1796 + 195471971 I e canFam3.chr7 36460923 6608 + 80974532 I e ponAbe2.chr1 226464444 1300 - 229942017 I a score=65329.000000 s hg38.chr1_KI270759v1_alt 339729 25 + 425601 ctccctgtacttcagcAGCAGAGGT s panTro4.chr1 225095448 25 + 228333871 ctccctgtacttcagcAGCAGAGGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140354872 25 - 143122389 ctccctgtacttcagcAGCAGAAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17060478 25 - 229590362 ctccctgtacttcggcAGCAGAAGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223824449 25 - 227556264 ctccctgtacttcggcAGCAGAAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16874845 25 - 220367699 CTCCCTGTACTTCGGCAGCAGAAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82676233 25 + 85787240 ctccctgtactTCGGCAGCAGAAGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14387129 25 - 49578535 ctccctgaacttcagcAGGAGAtgt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36467531 25 + 80974532 cttcatctaggccagaagcagaagt i canFam3.chr7 I 6608 C 0 e mm10.chr1 178881543 1796 + 195471971 I e ponAbe2.chr1 226464444 1300 - 229942017 I a score=107167.000000 s hg38.chr1_KI270759v1_alt 339754 42 + 425601 ATTCAtgggc--aagttgc------ttaagttttctgaacagttattttc s panTro4.chr1 225095473 42 + 228333871 ATTCAtgagc--aagttac------ttaagttttgtgaacagttattttc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140354897 42 - 143122389 ACTCAtgggc--aagttac------ttaacttttctgaactgttattttc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17060503 42 - 229590362 ACTCAtgggc--aagttac------ttcacttttcggaactgttattttc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223824474 50 - 227556264 ACTCATGGGCTTCTGTTCCGAAACAttcacttttcggaactgttattttc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16874870 42 - 220367699 ACtcatgggc--aagttac------ttcactttTCTGAACTGTTATTTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82676258 42 + 85787240 ACTCAtgggc--aagttac------ttcacttttctgaactgttattttc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14387154 42 - 49578535 gttcatgggc--aagttac------ttaacttttctgaactgtgattttc i calJac3.chr19 C 0 C 0 s mm10.chr1 178883339 42 + 195471971 aTTGAtgggt--gaaattc------ttagcttttctgaactttaattttc i mm10.chr1 I 1796 C 0 s canFam3.chr7 36467556 42 + 80974532 Actcgggacc--aagctgc------ttagctcttttgaatgtctgttttc i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226464444 1300 - 229942017 I a score=5181544.000000 s hg38.chr1_KI270759v1_alt 339796 1458 + 425601 tcatcaatac---agaaaggataatagt-atttagcttatgattctac-tgtgggaactgaacgaaactgatg-tttgtacagcacctggcacttggcagatactcagcaaatatttgGGTC-TTCCCTGTCTCTGCACCTGGTCGTTACTTCTTCCTGATTTTTGTCTTGGGTTTGCAACCTGATTCCTGGCTGAGCTTTAGGTTGGTTTCTGTATAACGATCAACCAAAGCAGGTAATCACTCATGAGCCATTCAGGTTTTAACTTGATGAGTTTCAGAATTCTGCTATTCAAATGGCATTTAGGTAGAAA-C-GTATCCTCCTGTAATTTGACATTTATTTTCTCCAAAATCTCATTCAGTTCAACCTGCAAGAATTATTTGAATTCACTTATTTGTAGTGTGAATGTCAGTAGGCTTTAGAAGGTCAGTGGTGCGTGGTGGAAAGAA-TTTAAGAGGACCAATGCTATTTGCAACCCCAGCGTGATTTTTCTGGGGTTTCCTAGTAGGTCATGAACGTCAACCTTTTACTTCCCCTTCTCATTTTGCCTCAGATTTCCCAAGGAGCTACATGAAGAACAGATGA-GTGTTTGTCAGAACTTAACCATTTCTCTTTTATCT--TC--------TCCCCTGTGGTAGTGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTCGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGGCTGTGTCTCTCGCTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAATGGCAGCAAACACATTCCATACAAGTAAGTGACTCTTCTACTCAA---------AGAATGTGG----T-GGGGTAAGCATGGTGTGGGACGCTTTGTTCAGTGC-----------------CATCTGTGGAGAGGTGTGCCACA-GAGGGACAGCCTGGACCCCATTATAAGTTCAGTGCCAGAGACCAGCCTTAGCTAACAGTTGTGTAATGCATGATCTCCCAAATTCAAAACTTTTGGAAATACTTAAATCTATTCCAGTTCTAACTTTAGGCTGCTCAAATTAGA-GGAAATAGGAAATTATCTCAGTTGAGGTCTCCACTCGCAAATGAAGGTGGTGGGTCATTGTCACCATAATAAAGATGTGCCTGTTTCATAGTGATGAGAGTGAGGGGTGGAAGACTGGCTTA-----TCCTTAGGGGtagggccaccagact-taaccaa-aaaaa--tataggatatccaggcaaattcaaa-tttcagataaccaacaaataaggttgtattataagtatg-cacc-ccaacattgcatgggacGCTCCTGGTGACATGTATTTTATCTGGCAACCCAATCTCGG-G-AGTTCAGAAAGC------TAGGGGAGTTAGCA--CCTGCCT--TCCCATGCAAATGTTTAGTC--ACTTCCAGGATCCTTCCTGTCTCTTTACTACTGCTCCAA-----TTAAATTACAGCCGCTCCTATGT------CTGGC-------------------AGAGA-------CAAAGCCACTC--CACCACCATCACCCC s panTro4.chr1 225095515 1462 + 228333871 tcatcaatac---agaaaggataatagt-atttggcttatgattttat-cgtgggaactgaacgaaactgatg-tttgtacagcacctggcacttggcagatactcagcaaatatttgGGTC-TTCCCTGTCTCTGCACCTGGTCGTTATTTCTTCCTGATTTTTGTCTTGGGTTTGCAACCTGATTCCTGGCTGAGCTTTAGGTTGGTTTCTGTATAACGATCAACCAAAGCAGGTAATCACTCATGAGCCATTCAGGTTTTAACTTGATGAGTTTCAGAATTCTGCTATTCAAATGGCATTTAGGTAGAAA-C-ATATCCTCCTTTAATTTGACATTTATTTTCTCCAAAATCTCATTCAGTTCAACCTGCAAGAATTATTTGAATTCACTTATTTGTAGTGTGAATGTC-GTAGGCTTTAGAAGGTCAGTGGTGCGTGGTGGAAAGAA-TTTAAGAGGACCAATGCTATTTGCAACCCCAGCGTGATTTTTCTGGGGTTTCCTAGTAGGTCATGAACGTCAACCTTTTACTTCCCCTTCTCATTTTGCCTCAGATTTCCCAAGGAGCTACATGAAGAACAGATGA-GTGTTTGTCAGAACTTAACCATTTCTCTTTTATCT--TC--------TCCCCTGTGGTAGTGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTCGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGGCTGTGTCTCTCGCTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAATGGCAGCAAACACATTCCATACAAGTAAGTGACTCTTCTACTCAA---------AGAATGTGG----T-GGGGTAAGCATGGTGTGGGACGCTTTGTTCAGTGC-----------------CATCTGTGGAGAGGTGTGCCACA-GAGGGACAGCCTGGACCCCATTATAAGTTCAGTGCCAGAGACCAGCCTTAGCTAACAGTTGTGTAATGCATGATCTCCCAAATTCAAAACTTTTGGAAATACTTAAATCTATTCCAGTTCTAACTTTAGGCTGCTCAAATTAGA-GGAAATAGGAAATTATCTCAGTTGAGGTCTCCACTCGCAAATGAAGGTGGTGGGTCATTGTCACCATAATAAAGATGCGCCTGTTTCATAGTGATGAGAGTGAGGGGTGGAAGACTGGCTTA-----TCCTTAGGGGtagggccaccagact-taaccaa-aaaaa--tataggatatccaggcaaattcaaa-tctcagataaccaacaaataaggttgtattataagtatg-cacc-ccaacattgcatgggacaCTCCTGGTGACATGTATTTTATCTGGCAACCCAATCTCAG-G-AGTTCAGAAAGC------TAGGGGAGTTAGCA--CCTGCCT--TCCCATGCAAATGTTTAGTC--ACTTCCAGGATCCTTCCCGTCTCTTTACTACTGCTCCAAGACAATTAAATTACAGCCGCTCCTATGT------CTGGC-------------------AGAGA-------CAAAGCCACTC--CACCACCATCACCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226465744 1460 - 229942017 TCATCAATAC---AGAAAGGATAATAGTAATTTAGCTTATGATTTTAT-CATGAGAACTGAATGAAACTGATGTTTTATACAACACT--GCACT--GCAGATACTCAGCAAATATTTGGGTC-GTCCCTGTCTCTGCACCTGGTTGTTATTTCTTCCTGATTTTTTGTCTGGGTTTGCAA-CTGATTCCTGGCTGAGCTTTAGGTTGGGTTCTGTATAATGATCAACCAAAGCAGATAATCACTCATGAGCCATTCAGGTTTTAACTTGATGAGTTTCAGAATTCTGCTATTCAAATGGCATTTAGGTAGAAA-T-GTATCCTCCTTTAATTTGACATTTATTTTCTCCAAAATCTCATTCAGTTCAACCTGCAAGAATTATCTGAATTTATTTATTTGTAGTGTGAATGTCAGTAGGCTTTAGAAGGTCAGTGGTGCGTGGTGAAAAGAA-TTTAAGAGGACCAATGCTATTTGCAACCCCAGCATGATTTTGCTGGGGTTTCCTAGTAGGTCATGAACTTCAACCTTTTACTTCCCCTTTTCATTTTTCCTCAGATTTCCCAAGGAGCTACATGAAGAACAAATGA-GTGTTTGTCAGAACTTAACCATTTCTCTTTTATCT--TC--------TCTCCTGTGGTAGTGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTCGGAAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGGCTGTGCCTCTCACTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAATGGCAGCAAACACATTCCATACAAGTAAGTGACTCTTCTACTCAA---------AGAATGCGG----T-GGGGTAAGCATGGTGTGGGATGCTTGGTTCACTGC-----------------CATCTGGGGAGAGGTGTGCCACA-GAGGGACAGCCTGGACCCCATTATAAGTTCAGTGCCAGAGACCAGCCTTAGCTAACAGTTGTGTAATGCATGGTCTCCCAAATTCAAAACTTTTGGAAATACTTAAATCTATTCCAGTTCTAACTTTAGGCTGCTCAAATTAGA-GAAAATAGGAAATTATCTCAGTTGAGGTCTCCACTCGCAAATGAAGGTGGTGGGTCATTATCACCATAATAAAGATGCACCTGTTCCATAGTGATGAGAGTGAGGGGTGGAAGACTGGCTTA-----TCCTTAGGGGtagggccaccagact-taaccaa-aaaaa--tataggatatccaggcaaattcaaa-tttcagataaccaacaaataaagttgtattataagtatg-cacc-ccaacattgcatgggacaCTCCTGGTGACATGTATTTTATCTGGCAACCCAATCTCGG-G-AGTTTAGAAAGC------TGGGGGAGTCAGCA--CCTGCCT--TCCCATGCAAATGTTTAGTC--ACTTCCAGGATCCTTCTTGTCTCTTTATTGCTGCTCAAAGACAATTAAATTGCAGCCGCTCCTCTGT------CTGGC-------------------AGAGA-------CAAAGCCACTC--CACCACCATCACCCC i ponAbe2.chr1 I 1300 C 0 s nomLeu3.chr5 140354939 1462 - 143122389 tcatcaatag---agaaaggataatagt-atttagcttatgattttat-catgggaagtgaatgagactgatg-tttgtacagcacctggcacttggcagattctcagcaaatattTGGGTC-TTCCCTGTCTCTGCACCTGGTTGTTATTTCTTCCTGATTTTTGTCTTGGGTTTGCAACCTGATTCCTGGCTGAGCTTGAGGTTGGGTTCTGTATAATGATCAACCAAAGCAGGTAATCACTCGTGAGCCATTCAAATTTTAACTTGATGAGTTTCAGAATTCTGCTATTCAAATGGCATTTAGGTAGAAA-T-GTGTCCTCCTTTAATTTGACATTTATTTTCTCCAAAATCTCATTCAGTTCAACCTGCAAGAATTATTTGAATTCATTTATTTGTAGTGTGAATGTCAGTAGGCTTTAGAAGGTCAGTGGTGCGTGGTGGAAAGGA-TTTAAGAGGACCAATGCTATTCGAAGCCCCAGCATGATTTTGCGGAAGTTTCCTAGTAGGTCATGAACTTCAACCTTTCACTTCCCCTTTTCATTTTTCCTCAGATTTCCCAAGGAGCTACACAAAGAACAGATGA-GTGTTTGTCAGAACTTAACCATTTCTCTTTTATCT--TC--------TCTCTTTTTGTAGTGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTCGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGGCTGTGCCTCTCACTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAACGGCAGCAAACACATTCCATACAAGTAAGTGACTCTTCTACTCAG---------AGCATGCGG----T-GGGGTAAGCATGGTGTGGGACGCTTGGTTCAGTGC-----------------CATCTGGGGAGAGGTGTGCCACA-GAGCGACAGCCTGGACCCCATTATAAGTTCAGTGCCAGAGACCAGCCTTAGCTAACAGTTGTGTAATGCATGGTCTCCCAAATTCAAAACTTTTGGAAATACTTAAATGTATTCCAGTTCTAACTTTAGGCTGCTCAAATTAGA-GGAAATAGGAAATTATCTCAGTTGAGGTCTCCACTCGCAAATGAAGGTGGTGGGTCATTGTCACCGTAATAAAGATGCACCTGCTTCATAGTGATGAGAGTGA-GGGTGGAAGACTGGCTTA-----TCCTTAGGGGtagggccaccagact-taacc-a-aaaaa--tataggatatccaggcaaattcaaattttcagataaccaacaaataaggttgtattataagtatg-cacc-ccaacattgcatgggacaCGCCTGGTGACATGTATTTTATCTGGCAACCCAATCTCGG-G-AGTTTAGAAAGC------TGGGGGAGTTAGCA--CCTCCCT--TCTCATGCAAATGTTTAGTC--ACTTCCAGGATCCTTCCTGTCTCTTTATTGCTGCTCCAAAACAATTAAATTACAGCCGCTCCTATGT------CTGGC-------------------AGAGA-------CAAAGCCACTC--CACCACCATCACCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17060545 1463 - 229590362 tcatcaatac---agaaaggataatagt-atgtagcttatgattttat-catgggaattgaatgaggctgatg-tttgtacagcacctggcacttggcagatactcagcAAATATTTGGGTC-TTCCCTGTCCCTGCACCTGGTTGTTATTTCTTCCTGATTTTTGCCTTTGGTTTGCAACCTGATTCCTGGCTGAGCTTTAGGTTGGGTACCGTATAATGATCAACCAAAGCTGGTAATCACTCATGAGCCATTCAGGTTTTAACTTGATGAGTTTCAGAATTCTGCTGTTCAAATGGCATTTAGGTAGAAA-T-GTAGCCTCCTATCATTAGACATTTATTTTCTCCAAAATCTCATTCAGTTCAACCTGCAAGAATTATTTGAATTCATTTATCTGTAGTGTGACTGTCAGTAGACTTTAGAAGGTCAGTGGTGTGTGGTGAAAAGAATTTTAAGAGGACCAATGCTATTTGCAACCCCAGCATGATTTTGCTGGGGTTTCCTAGTAGGTCGTGAACTTCAACCTTTTACT-CCCCTTTTCATTTTTCCTCAGGTTTCCCAAGGAGCTACATGAAGAACAGATGA-GTGTTTGTCAGAACTTAACCATTTCTCTTTTATCT--TC--------TCTTATGTGGCAGTGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTCGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGACTGTGCCTCTCGCTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAATGGCAGCAAACACATTCCATACAAGTAAGTGGCTCTTCTACTCAA---------AGAATGCGG----TGGGGGTAAGCACGGTGTGGGACGCTTGGCTTAGTGC-----------------CATCTGGGGAGAGGTGTGCCACA-GAAGGACAGCCTGGACCCCATTCTAAGTTCAGTGCCAGAGACCAGCCTTAGCTAACAGTTGTGTAATGCATGATCTCCCATATTCAAAACTTTTGGAAATACTTAAATCTATTCCAGTTCTAACTTGAGGCTACTCAAGCTAGAAGAAAATAGGAAATTATCTCAGTTGCGTTCTCCACTCGCAACTGAAGGGGGTGGGCCATTGTCACCATGAGAAAGATGCGCCTGTTTCACAGTGATGAGAATGA-GGGTGGAAGACTGGCTTA-----CCCTTAGGGGtagggccaccagact-caaccaa-acaaa--tacaggctatccaggcaaattcgaa-tttcagataaccaacaaataaggttgtattatacgtatg-cacc-ccaacattgcgtgggacaCTCCTGGTGTCATGTATTTTATCTGGCAGCCCCATCTAGG-G-AGTTTAGAAAGC------TGGGAGAATTAGCA---CCGCCT--TCCCATGCAAATGTTTAGTC--ACTTCCAGGATCCTTCCTGTCTCTTTATTGCTGCTCCAAGACAATTAAATTACAGCCGCTCCTATGT------CTGGC-------------------AGAGA-------CAAAGCCACTC--CACCACCATCACCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223824524 1463 - 227556264 tcatcaatac---agaaaggataatagt-atgtagcttatgattttat-catgggaattgaatgaggctgatg-tttgtacagcacctggcacttggcagatactcagcaaATATTTGGGTC-TTCCCTGTCTCTGCACCTGGTTGTTATTTCTTCCTGATTTTTGCCTTTGGTTTGCAACCTGATTCCTGGCTGAGCTTTAGGTTGGGTTCTGTATAATGATCAACCAAAGCTGGTAATCACTCATGAGCCATTCAGGTTTTAACTTGATGAGTTTCAGAATTCTGCTGTTCAAATGGCATTTAGGTAGAAA-T-GTAGCCTCCTATCATTAGACATTTATTTTCTCCAAAATCTCATTCAGTTCAACCTGCAAGAATTATTTGAATTCATTTATCTGTAGTGTGACTGTCAGTAGACTTTAGAAGGTCAGTGGTGTGTGGTGAAAAGAA-TTTAAGAGGACCAATGCTATTTGCAACCCCAGCATGATTTTGCTGGGGTTTCCTAGTAGGTCGTGAACTTCAACCTTTTACTCCCCCTTTTCATTTTTCCTCAGGTTTCCCAAGGAGCTACATGAAGAACAGATGA-GTGTTTGTCAGAACTTAACCATTTCTCTTTTATCT--TC--------TCTTATGTGGCAGTGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTCGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGACTGTGCCTCTCGCTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAATGGCAGCAAACACATTCCATACAAGTAAGTGGCTCTTCTACTCAA---------AGAATGCGG----TGGGGGTAAGCACGGTGTGGGACGCTTGGCTTAGTGC-----------------CATCTGGGGAGAGGTGTGCCACA-GAAGGACAGCCTGGACCCCATTCTAAGTTCAGTGCCAGAGACCAGCCTTAGCTAACAGTTGTGTAATGCATGATCTCCCATATTCAAAACTTTTGGAAATACTTAAATCTATTCCAGTTCTAACTTGAGGCTACTCAAGTTAGAAGAAAATAGGAAATTATCTCAGTTGAGTTCCCCACTCACAACTGAAGGGGGTGGGCCATTGTCACCATGAGAAAGATACGCCTGTTTCACAGTGATGAGAATGA-GGGTGGAAGACTGGCTTA-----CCCTTAGGGGtagggccaccagact-caaccaa-acaaa--tacaggctatccaggcaaattcgaa-tttcagataaccaacaaataaggttgtattatacgtatg-cacc-ccaacattgcgtgggacaCTCCTGGTGTCATGTATTTTATCTGGCAGCCCCATCTAGG-G-AGTTTAGAAAGC------TGGGAGAATTAGCA---CCGCCT--TCCCATGCAAATGTTTAGTC--ACTTCCAGGATCCTTCCTGTCTCTTTATTGCTGCTCCAAGACAATTAAATTACAGCCGCTCCTATGT------CTGGC-------------------AGAGA-------CAAAGCCACTC--CACCACCATCACCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16874912 1462 - 220367699 TCATCAATAC---AGAAAGGATAATAGT-ATGTAGCTTATGATTTTAT-CATGGGAATTGAATGAGGCTGATG-TTTGTACAGCACCTGGCACTTGGCAgatactcagcaaatatttgggTC-TTCCCGGTCTCTGCACCTGGTtgttatttcttcctgatttttgcCTTTGGTTTGCAACCTGATTCCTGGCTGAGCTTTAGGTTGGGTTCTGTATAATGATCAACCAAAGCTGGTAATCACTCGTGAGCCATTCAGGTTTCAACTTGATGAGTTTCAGAATTCTGCTGTTCAAATGGCATTTAGGTAGAAA-T-GTAGCCTCCTATaattagacatttattttctccaaaatctCATTCAGTTCAACCTGCAAGAATTATTTGAATTCATTTATCTGTAGTGTGACTGTCAGTAGACTTTAGAAGGTCAGTGGTGTGTGGTGAAAAGAA-TTTAAGAGGACCAATGCTATTTGCAACCCCAGCATGATTTTGCTGGGGTTTCCTAGTAGGTCGTGAACTTCAACCTTTTACTCccccttttcatttttcctcagGTTTCCCAAGGAGCTACATGAAGAACAGATGA-GTGTTTGTCAGAACTTAACcatttctcttttatct--tc--------tctTATGTGGCAGTGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTTGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGACTGTGCCTCTCGCTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAATGGCAGCAAACACATTCCATACAAGTAAGTGACTCTTCTACTCAA---------AGAATGCAG----T-GGGGTAAGCATGGTGTGGGACGCTTGGCTCAGTGC-----------------CATCTGGGGAGAAGTGTGCCACA-GAAGGACAGCCTGGACCCCATTCTAAGTTCAGTACCAGAGACCAGCCTCAGCTAACAGTTGTGTAATGCATGATCTCCCAAATTCAAAACTTTTGGAAATACTTAAATCTATTCCAGTTCTAACTTGAGGCTACTCAAGttagaagaaaataggaaattaTCTCAGTTGCGTTCTCCACTCACAACTGAAGGGGGTGGGCCATTGTCACCATGAGAAAGATGTGCCTGTTTCATAGTGATGAGAATGA-GGGTGGAAGACTGGCTTA-----CCCTTAGGGGTAGGGCCACCAGACT-CAACCAA-ACAAA--TATAGGATATCCAGGCAAATTCGAA-TTTCAGATAACCAACAAATAAGGTTGTATTATACGTATG-CACC-CCAACATTGCGTGGGACACTCCTGGTGtcatgtattttatctggcagccCCATCTAGG-G-AGTTTAGAAAGC------TGGGAGAATTAGCA---CCGCCT--TCCCATGCAAATGTTTAGTC--ACTTCCAGGATCCTTCCTGTCTCTTTATTGCTGCTCCAAGACAATTAAATTATAGCCGCTCCTATGT------CTGGC-------------------AGAGA-------CAAAGCCACTC--CACCACCATCACCCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82676300 1464 + 85787240 tcatcaatac---aggaaggataatagt-atgtagcttatgattttat-catgggaattgaatgaggctgatg-tttgtacagcacctggcagttggcagatactcagcaaatatttgGGTC-TTCCGTGTCTCTGCACCTGGTTGTTATTTCTTCCTGATTTTTGCCTTTGGTTTGCAACCTGATTCCTGGCTGAGCTTTAGGTTGGGTTCTGTATAATGATCAACCAAAGCTGGTAATCACTCGTGAGCCATTCAGGTTTTAACTTGATGAGTTTCAGAATTCTGCTGTTCAAATGGCATTTAGGTAGAAA-T-GTAGCCTCCTATAATTAGACATTTATTTTCTCCAAAATCTCATTCAGTTCAACCTGCAAGAATTATTTGAATTCATTTATCTGTAGTGTGACTGTCAGCAGACTTTAGAGGGTCAGTGGTGTGTGGTGAAAAGAA-TTTAAGAGGACCAATGCTATTTGCAACCCCAGCATGATTCTGCTGGGGTTTCCTAGTAGGTCGTGAACTTCAACCTTTTCCTCCCCCTTTTCATTTTTCCTCTGGTTTCCCAAGGAGCTACATGAAGAACAGATGA-GTGTTTGTCAGAACTTAACCATTTCTCTTTTATCT--TC--------TCTTATGTGGCAGTGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTCGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGACTGTGCCTCTCGCTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAATGGCAGCAAACACATTCCATACAAGTAAGTGACTCTTCTACTCAA---------AGAATGCGG----TGGGGGTAAGCACGGTGTGGGACGCTTGGCTCAGTGC-----------------CATCTGGGGAGAGGTGTGCCACA-GAAGGACAGCCTGGACCCCATTCTAAGTTCAGTGCCAGAGACCAGCTTTAGCTAACAGTTGTGTAATGCATGATCTCCCAAATTCAAAACTTTTGGAAATACTTAAATCTATTCCAGTTCTAACTTGAGGCTACTCAAATTAGAGGAAAATAGGAAATTATCTCAGTTGCGTTCTCCACTCGCAACTGAAGGGGGTGGGCCATTGTCACCATGAGAAAGATGCGCCTGTTTCATAGTGATGAGAATGA-GGGTGGAAGACTGGCTTA-----CCCTTAGGGGtagggccaccagact-caaccaa-aaaaa--tataggctatccaggcaaattagaa-tttcagataaccaacaaataaggttgtattatacgtatg-cacc-ccaacattgcgtgggacaCTCCTGGTGTCATGTATTTTATCTGGCAGCCCCATCTAGG-G-AGTTTAGAAAGC------TGGGAGAATTAGCA--CCCGCCT--TCCCATGCAAATGTTTAGTC--ACTTCCAGGATCCTTCCTGTCTCTTTATTGCTGCTCCAAGACAATTAAATTACAGCCGCTCCTATGT------CTGGC-------------------AGAGA-------CAAAGCCACTC--CACCACCATCACCCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14387196 1428 - 49578535 tcatcaataa---agaaaggataatagt-atttagcttatgtttttat-catgggaactgaatgagactgatg-tttgtacactgcctggcacttggcagatactcagcaaatatttgGGTC-TTCCCTGTCTATACA---GGTTGTTATTTCTTCCTGATTTTTGCCTTTGGTTTGCAACCCAATTCCTGGCTGAACTTTGGGTTGGGTTCGGTATGATGACCAACCAAAGCACATAATCACTCAGGAGCCATTCAGGTTTTAACTTGATGAGTTTCACAATTCTGCTGTTCAAGTGACATTTGGGTAGAAA-C-GTATCCTCCTTTAATTAGACATTGATTTTCTCCAAAATCTCCTTCAGTCCAACCTACAAGGATAATCTGGATTCATT----TGTGGT----ATGTCAGCAGACTCTAGAAGGTC--TGGTGTGTGGGGGAAAGAA-TTTGCGAGAACCAGTGCT-TCTGCAACCCCAGCATGGTTCTGCTGGCATTTCCTACTGGGTCATGAACTTCAACCTTTTACTTCCCCTTTTCATTTTTCCTTAGATTTCCAAAGGAGCTGCATGAAGAACAGATGA-GTGTTTGTCAGAACGTAACCCCTTCTCTTTTCTCT--TC--------TCTCCCCTGGTAGTGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTTGGCAGCTGTGTGAAAGCACTTAGCAAAAATCGAGACGGAGGCTCAGGGCTGTGCCTCTCACTGTCTGCTCTGGGCAATGTCATCCTGGCTCTGGTCAATGGCAGCAAACACATTCCGTACAAGTAAGTGACTCTTCTACTCAA---------AGAATGTGG----T-GGGGTCAGCATGGTGTGGGACGCTTGG-TCGGTGC-----------------CGTCTCT---GAGGTGTGCCACA-GAGGGACAGCCTGGACTTCATTGCAAGTTCAGTGCCAGAGGTCAGCCTTGGCCAACAGCTGTGTAATACATGATTTTCCAAATTCAAAACTTTTGGAAACACTGAAATCTATTCCAGTTCTAACTTTAGGCTGCTCAAATGAGA-GGAAGTAGGAAATTGTCTCAGTTGAGGTCTCCACTCGCCACTGAA-------GGTCATTGTCACCGTAACAAAGAGGCATCTGTTTCATATTGATGACAGTGA-GGGTGGAAGCCTGGCTCA-----CCCTTCGGGTtagtgccaccagact-taaccag-aagaatgtataggatatccaggcaaattcgaa-tttcagataaccagcaaataggactgtattataagtatg-cgct-tcaacactgcacggggcaCTCCTGGCATCACGTATTGTGTCTGGCAGCCCCACCTAGG-G-AGCTTAGCAAGC------TTGAGAAGTTACCG--CCCACCT--TCCCCTGCAAACGTTCACTG--ACTTCCAGGGTCCTTCCC-TGTCTTTAGTACTGCTCCAGGACCGTCA------------CTTTATGT------CTGGC-------------------AAAGA-------CAAAGCCACTCTTCACCACCATCACCCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178883381 1295 + 195471971 tcatctacaa---ggagaggatgatggt-gtttag---gtgattttgtgtgtgggaactgaataagatagatg-tctgt---gcacctggcaattggcagacactcagcaaacactTGGGTC-TCCCCTGCCTTTGCACCTGGATCTCGCATCTTCCAGATTTTT-CCTGGAGTTACCAA-------CCTGGCTAGACT----------------------------------AGATAATCACTCATGAACTGTTGGGGTTTTGACTCAGTAAGTTTCAGAACTCTGTCATCCATGCAACAGTTAGCTAAAAC-TCTTACCTTCCTACAATGAGCCATTT--------------------------GATCTACTGGAATT------GTGCTTTTATTTGTAAAATAAATGGCAGTAGATTTGAGAAGGTTTGTTGTTTGTGGAAGACAGAA-TTTAAGAGCCCTGATGGTATTTGAAACCTCGGCTTGGCTTGTTTG-----TCTTA--------TGA-----AATGTTTGTCTTTTCCCTTT--------CCCATGATTCTCAGAGAGCTGCATGAAGAAGAGAAAATGTGTTGCCCAGACCTTACCCACTCTCCCCTTTTCT--TCTTGTGTCTTCCCCTGTACCAGTGTCTGGAGGTCGAAGCCGCCTGCATCTCATCGACCTCGGGAGCTGTGTGAAAGCTCTCAGCAAAAACCGAGAAGGAGGCTCGGGGCTGTGCCTCTCACTGTCTGCTCTGGGCAACGTCATCCTGGCTTTGGTCAACGGGAGCAAGCACATCCCATACAAGTAAGTGACTCTCCTACTGGACAGCAAGATGGCATGTGGGCATT-GCATTGAGCCGTGACCGAGTCTCTGTCCTGAGGGA-----------------TGCCCTGGGAGAA--GTGCAGCT-AACGGTCAGTCTGGTCTGGGCTATGAGTTCAGTGACAGAGATTAGCTTTAGCTAGTGATCATATAATGAATCATCTTCCA------------------------AAAGCTATGTCA--------CGGAGGC--------CTATA---------------------GTCATGGTCACCATT-------------GGCGGGGTAATGTCAGCATCACGTCAGTG-GTCTGCTCCATGGTGTGGCATGCAG-TGACCAAAG-------------------AGCAGTGGAGCAgccagattaaaaccac-caggg--taccactcat-----tagatgtgga-tgtcagggaaacaacagataa-cttttagttcaagtatgacacctttattattgcgt-ggacatCACAGGCATTCTGTGATACATCTGATATCCCTACCTCGGTG-AGCTTAAAAAGCCTGGGGTGGGGGATGGGGTATTCATGTCTAGTTCCATGGAAATGTTTACCCCTGTATACAGGTTCCTTGCCTTTTGATCATTACTGCTCCAGGAAGATCGAGTCAGAGCTTCTCTCATTT------CTGG-----------------------GA-------CAGCCCTAAGC--TGTCACCAGTGCCCA i mm10.chr1 C 0 I 48 s canFam3.chr7 36467598 1471 + 80974532 tcatctatattaacaaaagaacaagagt-attctgcctgtggttttac-tgtgggaactgaatgagactggtg-tttgtgcagcacccggcacttggcagatactcaacaaacactTGGGTCTTTCCCTATCTCTGCACCTGGCTATTACTTCTTCCTGATTTTA-CCAGGGGTTATCACCCTGATTCCTGGCTGAACTTTCAGTCAAGGGCTCTATGATGATCAACCAAAGTACATAGTCTCTCCTGGGCTATTCAGA-TGCAACCCAATCAATTTCATAATTCTGCTCTCTAAAGGACCTGAAAGTGCAAAGC-TTATCCTCCTCTCATTGGACATTTACCTTCTCTAAAATCTCCTCCAATTCAACCTATGGGTGTT------ACTCATTTGTTTATAGGCTGAAT----ACAGGCTTTA---GGTCAGTGATGTGAGGTGGACAGAT-TTTAAGAGGACC-ATGTGGTTGGCAACC-CGGCATGATTTTGCTGGAGTTTCCAACTAAGTCATGAATGTTGATCTTTCCCTTCCCCTTTTAGGTTTCCCTCAGGTTTCCCAAGGAGGTAACTGAAGGGCAGATGA-ATGTTTGCCAGAACTTAACCACTTCTCTCTCCTCTTGTC--------TTCTCTGTGTCAGTGTCCGGAGGCCGCAGCCGTCTACACCTCATCGATCTCGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGGGAAGGAAGCTCAGGGCTCTGCCTCTCACTGTCCGCTCTGGGCAATGTCATCCTGGCTCTTGTCAATGGCAGTAAACACATCCCATACAAGTAAGTGACCCTTCCACTGGA---------TAAATGCAC----T-GGGGTAAGCGTGGTGCCAGG-GCTGGGTGTGGGACTTCCACATTCTGGACTGCATTCTGGACTGGGTGTGGGACATTCCAGACATTCTGGACTGCATTGTTAGTATGGTGCCC-AAACCAGCCTCTGCTTACAGTCGTGTATCCCATGATCTTCCAAATTCAAAAACTATGAAAATACTTAAATTTGCCCCAATCTTGACTTTGGGCTGCTCAAGTCAGA-GATAATAGGAAGTTATCTCAGTTAGGGTCTCCAATTCCAATTGCCACTGGTAGATCAT----ACCATCACACAGATGC------TTCACAAG------------GGGTGGAAGATTGAACTACTCTTCCCTTGGGAGTTgagctgtcctatt-aaaccaataaaaa--cacaggatacccaggaaatttagga-tttcagatatgcaacaaataattttttagtataagtatg-c-cc-ccagtattgcat-ggACA------GGGGAATCT--------TGGCAGCCCTACTTAGG-ACAGCTCCTAAAGC------CTGGGGCATTGCCA--CCCACCA--TCCTGTGCAAATGTTTACTCC-ATTTCCAAGATCCTTTCCCTCTTTCTGTTA-TACTCTGAGAGGATGAAATTAGAGCTGCTCCTAGGTCTATGACTGGCTATGTCATCTGTGCCCATGAAGGACCCAGCCCGGGGCCACCCCTCACAACCATCACCC- i canFam3.chr7 C 0 C 0 a score=204549.000000 s hg38.chr1_KI270759v1_alt 341254 66 + 425601 AACTAAGCGTTCTCATTGGACCGTGTGGTGGCA-----GGCCATTGACTGGCTGTCCAGGCTTCTGCCAAG s panTro4.chr1 225096977 66 + 228333871 AACTAAGCGTTCTCATTGGACCGTGTGGTGGCA-----GGCCATTGACTGGCTGTCCAGGCTTCTGCCAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226467204 66 - 229942017 AACTAAGCGTTCTCATTGGACCATGTGGTGGCA-----Ggccattgactggctgtccaggcttctgccaag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140356401 66 - 143122389 AACTAAGCGTTCTCATTGTACCGTGTGCTGGCA-----GGCCATTGACTGGCTGTCCAGGCTTCTGTCAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17062008 66 - 229590362 AACTAAGCGTTCTCATTGGACCGTGTGGTGGCG-----GGCCATTGACTGGCTGGCCGGGCTTCTGCCAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223825987 66 - 227556264 AACTAAGCGTTCTCATTGGACCGTGTGGTGGCG-----GGCCATTGACTGGCTGGCCGGGCTTCTGCCAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16876374 66 - 220367699 AACTAAGCGTTCTCATTGGACCGTGTGGTGGCG-----GGCCATTGACTGGCTGTCCGGGCTTCTGCCAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82677764 66 + 85787240 AACTAAGCGTTCTCATTGGACCGTGTGGTGGCG-----Ggccattgactggctgtccaggcttctgccaag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14388624 63 - 49578535 AAATAAGTGTTGTCACTGGACAGTGGGGTG--------GGCACTTGGCTGGCTGTCCAGGCTCTTTCCAAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36469069 71 + 80974532 AACTCAGCTTTGCCACTAAACAACATGGTGATGCTAGTGGGTGTTCTCTGCTTATTCAGGGCTCTTCCAAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178884676 48 + 195471971 I a score=253188.000000 s hg38.chr1_KI270759v1_alt 341320 63 + 425601 GCCTAGCTGAGCCTCTTACTAGCTGCATGAACCTTCATTCTTCCTAAAATGAGGGTTAAAGCT s panTro4.chr1 225097043 63 + 228333871 GCCTAGCTGAGCCTCTTACTAGCTGCATGAACCTTCATTCTTCCTAAAATGAGGGTTAAAGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226467270 63 - 229942017 gcctagctgagcctcttactagctgcatgaaccctcattcttcctaaaatgagggttaaagct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140356467 63 - 143122389 GCCTAGCTGAGCCTCTTACTAGCTGCGTGAACCTTCATTCTTCCTAAAATGAGGGTTAAAGCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17062074 63 - 229590362 GCCCAGCTGAGCCTCTTACTAGCTGCATGAACCTTCATTCTTCCTAAAATGAGGGCTAAAGCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223826053 63 - 227556264 GCCCAGCTGAGCCTCTTACTAGCTGCATGAACCTTCATTCTTCCTAAAATGAGGGCTAAAGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16876440 63 - 220367699 GCCCAGCTGAGCCTCTTACTAGCTGCATGAACCTTCATTCTTCCTAAAATGAGGGCTAAAGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82677830 63 + 85787240 gctcagctgagcctcttactagctgcatgaaccttcactcttcctaaaatgagggctaaagtt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14388687 63 - 49578535 GCCTAGAAGAGCCTCGTACCAGCTGCGTGAGCCTCCCTTCTTCCTAAAATGAGGGTTAGAGCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178884724 63 + 195471971 ACTTAGCTGTGTCTCCCACTAGCTACAGGAACCTCTACTCTTCTTAAAATGAGGGTTATGGCT i mm10.chr1 I 48 C 0 s canFam3.chr7 36469140 63 + 80974532 GTCCAGCTGCTCCTCTCACTAGCTCTCAGAACCTTCACTCATCATAAACTGATGCTTCTAGCT i canFam3.chr7 C 0 C 0 a score=132975.000000 s hg38.chr1_KI270759v1_alt 341383 40 + 425601 ATACATG----TTACATCACAGAAATATAAGGCTCAAAATGATA s panTro4.chr1 225097106 40 + 228333871 ATACATG----TTACATCACAGAAATATAAGGCTCAAAATGATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226467333 44 - 229942017 atacatgttacttacatcacagaaatataaggctcaaaatgata i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140356530 44 - 143122389 ATACATGTTACTTACATCACAGAAATATAAGGCTCAAAATGATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17062137 44 - 229590362 ATACATGTTACTTACATCACAGAAATATAAGGCTCAAAATGATA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223826116 44 - 227556264 ATACATGTTACTTACGTCACAGAAATTTGAGGCTCAAAATGATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16876503 44 - 220367699 ATACATGTTACTTACATCACAGAAATATAAGGCTCAAAATGATA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82677893 44 + 85787240 atacatgttacttacatcacagaaatataaggctcaaaatgata i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14388750 44 - 49578535 GTACATGTTGCTTACATCACAGAAACAGAAGGCTCAACGAGATA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36469203 34 + 80974532 ----------CTCATATCACAAGGATCTGGGACTCAGAATGgtg i canFam3.chr7 C 0 I 36 e mm10.chr1 178884787 0 + 195471971 C a score=46448.000000 s hg38.chr1_KI270759v1_alt 341423 15 + 425601 AAACATGTATAAAAG s panTro4.chr1 225097146 15 + 228333871 AAACATGTATAAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226467377 15 - 229942017 aaacatgtataaaag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140356574 15 - 143122389 AAACATGTATAAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17062181 15 - 229590362 AAACATGTATAAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223826160 15 - 227556264 AAACATGTATAAAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16876547 15 - 220367699 AAACATGTATAAAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82677937 15 + 85787240 aaacatgtataaaag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14388794 15 - 49578535 GAACATATATACAAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178884787 0 + 195471971 C e canFam3.chr7 36469237 36 + 80974532 I a score=6936.000000 s hg38.chr1_KI270759v1_alt 341438 9 + 425601 TTTATTGTA s panTro4.chr1 225097161 9 + 228333871 TTTATTGTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226467392 9 - 229942017 tttattgta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140356589 9 - 143122389 TTTATTGTA i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14388809 9 - 49578535 TGTATTATA i calJac3.chr19 C 0 I 4 e mm10.chr1 178884787 0 + 195471971 C e canFam3.chr7 36469237 36 + 80974532 I e rheMac3.chr1 17062196 0 - 229590362 C e chlSab2.chr25 82677952 0 + 85787240 C e papAnu2.chr1 16876562 0 - 220367699 C e macFas5.chr1 223826175 0 - 227556264 C a score=45873.000000 s hg38.chr1_KI270759v1_alt 341447 87 + 425601 ggctgggtgcggtggctcatgcctgtaatcctggcactttgggaggccgaggcgggtggatcacaaggtcaggagattgagaccatc s panTro4.chr1 225097170 87 + 228333871 ggctgggtgcagtggctcatgcctgtaatcctggcactttgggaggccgaggcgggtggatcacaaggtcaggagattgagaccatc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226467401 87 - 229942017 ggctgggtgcggtggctcacgcctgtaatctcagcactttgggaggccaaggcaggtggatcacaaggtcaggagattgagaccatc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140356598 87 - 143122389 ggctgggtgtggtggctcatgcctgtactcccagcactttgggagaccgaggcaggtggatcacaaggtcaggagattgagaccatc i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178884787 0 + 195471971 C e canFam3.chr7 36469237 36 + 80974532 I e calJac3.chr19 14388818 4 - 49578535 I e rheMac3.chr1 17062196 0 - 229590362 C e chlSab2.chr25 82677952 0 + 85787240 C e papAnu2.chr1 16876562 0 - 220367699 C e macFas5.chr1 223826175 0 - 227556264 C a score=94686.000000 s hg38.chr1_KI270759v1_alt 341534 203 + 425601 ctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggtgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaaaccaggaggcggagcttgcagtgagccaagatcacgccactgcactccagcctgggcaacagagcgagactccttctcaaaaaaaaa s panTro4.chr1 225097257 203 + 228333871 ctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagctgggcattgtggtgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaaaccaggaggcggagcttgcagtgagccaagatcgcgccactgcactccagcctgggcaacagagcgagactccttctcaaaaaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226467488 203 - 229942017 ctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggcgggcacctatagtcccagctactcgggaggctgaggcaggagaatggcatgaaaccaggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagtgagactccttctcaaaaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140356685 203 - 143122389 ctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggtgggtacctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaaactgggaagcgagccttgcagtgagccgagatggcgccactgcactccagcctgggcaacagagcaagactccttttcaaaaaaaaa i nomLeu3.chr5 C 0 C 0 s mm10.chr1 178884787 72 + 195471971 CTGGCTAAC-------AAC----TCTGTATTTTATATGCATCA--------------------------------------------------------CAGGAAAATAAGATG-------------------------------------------------CAGAATAGGCA------TGAAAATCTTTTTT--------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36469237 36 + 80974532 I e calJac3.chr19 14388818 4 - 49578535 I e rheMac3.chr1 17062196 0 - 229590362 C e chlSab2.chr25 82677952 0 + 85787240 C e papAnu2.chr1 16876562 0 - 220367699 C e macFas5.chr1 223826175 0 - 227556264 C a score=1507.000000 s hg38.chr1_KI270759v1_alt 341737 26 + 425601 aaaaaaaaaaaagaaaaaaaagaaaa s panTro4.chr1 225097460 11 + 228333871 aaaaaa---------------gaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226467691 10 - 229942017 aaaaaa----------------aaaG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140356888 11 - 143122389 aaaaaa---------------aaaaG i nomLeu3.chr5 C 0 C 0 s canFam3.chr7 36469273 26 + 80974532 agagagagagagagagagagagaaag i canFam3.chr7 I 36 C 0 e mm10.chr1 178884859 0 + 195471971 C e calJac3.chr19 14388818 4 - 49578535 I e rheMac3.chr1 17062196 0 - 229590362 C e chlSab2.chr25 82677952 0 + 85787240 C e papAnu2.chr1 16876562 0 - 220367699 C e macFas5.chr1 223826175 0 - 227556264 C a score=80532.000000 s hg38.chr1_KI270759v1_alt 341763 24 + 425601 TTTATTGTAGAATTTAGGACACTA s panTro4.chr1 225097471 24 + 228333871 TTTATTGTAGAATTTAGGACACTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226467701 24 - 229942017 TTTATTGTAGAATTTAGGACACTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140356899 24 - 143122389 GTTATTGTAGAACTTAGGACACTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17062196 24 - 229590362 TTTATTGTAGAATTTAGGACACTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223826175 24 - 227556264 TTTATTGTAGAATTTAGGACACTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16876562 24 - 220367699 TTTATTGTAGAATTTAGGACACTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82677952 24 + 85787240 tttattgtagagtttaggacacta i chlSab2.chr25 C 0 C 0 s mm10.chr1 178884859 24 + 195471971 TTTTTTCTGGAATCTAGAAGGCTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36469299 24 + 80974532 CTTTTTGTAAAATTTAGAACACTA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14388818 4 - 49578535 I a score=2606688.000000 s hg38.chr1_KI270759v1_alt 341787 884 + 425601 TGGCCAATAACCAATGATGAAAGTCTGGTTACACCTATCTAG-TCAAGCCTATCCTCACC-TATTTAAAGGG-AAAAAACACCGACCTTACAGAGTTGCCATGAGGTGAAGATTAACTAAATATATGTGGATTCATGGTTT---TATCTGTAAAAACCCTACAAAACCTACGTTGCTGTTGTGTAGGAGGAAA-----AAGTCGGGCAG---TGTATTCTATAATTACTGAGATTCACAATGAGTGCTGGAGTTTTTCTTCCCCTCAGCCCTATGTTGATGCCAGACCCCCC-CACCAAATACATTGTGAGTTTATTTCCTACCAGGAGAACCATTACTGGACTGACTTTAGGAGCTTAAATGGTGATTATAATCCTGTCCATCTCATTTCTAGAAATTT-GGAATCCTAGTTGGATAAACCCAGAAATGGTTTTCCCGGCTCTTGTAACAACCCTTTTCTATGGG-AGAATATT-CTGAGTTGAAGAATTATAGAGTTTCATTCGATGTCATTTCTGTAGTTGAGTAAATTCAG-----------CTTGT------------GGGGAGAAAGGGCAGGGGAGGG------AA-----------------------------------ACCGTTGGAGTTGGAGAT-----GAAGGGAAGAGT---ACTA--GCACTCACTGGTT-----TCCATAAAATGAGAATCATGTCTGTTAATGTCAGAACTTCATAGATCATGATATAGATAAAATTCCAAATTGCACCTTAGCAGGAGGTCATTGATTACATAT---CTTACTTATAGCTTTTACACTGTTTCTGCAGGGCGA-CATGCTTTTATGATTTCTATAAATAGTTGTTGAATTGATGGCGGGAAG-----ATAGATGCATGTAAAC--ATGAAATTATTT--TTAATT----TA----AAGTAACTTCCTTTTAGTTAGAGTTGGGTTTT-TTATAAATGAGTAGGGAAACATTAAAAATTGTTTTTA s panTro4.chr1 225097495 885 + 228333871 TGGCCAATAACCAATGATGAAAGTCCGGTTACACCTATCTAG-TCAAGCCTATCCTCACC-TATTTAAAGGG-AAAAAACACCGACCTTATAGAGTTGCCATGAGGTGAAGATTAGCTAAATATATGTGGATTCATGGTTT---TATCTGTAAAAACCCTACAAAACCTACGTTGCTATTGTGTAGGAGGAAA-----AAGCCGGGCAG---TGTATTCTATAATTACTGAGATTCACGATGAGCGCTGGAGTTTTTCTTCCCCTCAGCCCTAT-TTGATGCCAGACCCCCC--ACCAAATACATTGTGAGTTTATTTCCTACCAGGAGAACCATTACTGGACTGACTTTAGGAGCTTAAATGGTGATTATAATCCTGTCCATCTCATTTCTAGAAATTT-GGAATCCTAGCTGGATAAACCCAGAAATGGTTTTCCCGGCTCTTGTAACAACCCTTTTCTATGGG-AAAATATT-TTGAGTTGAAGAATTACAGAGTTTCATTCGATGTCATTTCTGTAGTTGAGTAAATTCAG-----------CTTGT------------GGGGAGAAAGGGCGGGGGAGGG------AA-----------------------------------ACCGTTGGAGTTGGAGAT-----GAAGGGAAGAGT--TACTATAGCACTCACTGGTT-----TCCATAAAATGAGAATCATGTCTGTTAATGTCATAACTTCATAGATCATGATATAGATAAAACTCCAAATTGCACCTTATTAGGAGGTCATTGATTACATAT---TTTACTTATAGCTTTTACACTGTTTCTGCAGGGCGA-CGTGCTTTTATGATTTCTATAAATAGTTGTTGAATTGATGGCGGGAAG-----ATAGATGCATGTAAAC--ATGAAATTATTT--TTAATT----TA----AAGTAACTTCCTTTTAGTTAGAGTTGGATTTT-TTATAAATGAGTAGGGAAACATTAAAAATTGTTTTTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226467725 885 - 229942017 TGGCCAATAACCAATGATGAAAGTCTGGTTACACCTATCTAG-TCAAGCCTATCCTCACC-TATTTAAAGGG-AAAAAACACAGACCTTACAGAGTTGCCATGAGGTGAGGATTTTCTAAATATATGTGGATTCATGGTTT---TATCTGTAAAAATCCTACAAAACCTAAGTTGCTATTGTGTAGGAGGAAA-----AGGTCAGGCAG---TGTATTCTATAATTACTGAGATTCAGGATGAGTGCTGGAGTTTTTCTTCCCCTCAGCCCTATGTTGATGCCAGACCCCCCCCCCCAAATACATTGTGAGTCTATTTTCTACCAGGAGAACCATTACTGGACTGACTTTAGGAGCTTAAATGGTGATTATAATCCTGTCCATCTCATTTCTAGAAATTT-GGAATCCTAGTTGGATAAACCCAGAAATGGTTTTCCCAGCTCTTGTAACAACCCTTTTCTACGGG-AAAATATT-TTGAGTTGAAGAATTATAGAGTTTCATTTGATGTCATTTCTGTAGTTGAATAAATTCAA-----------CTTGT------------GGGGAGAAACGGCAGGGGAGGG------AA-----------------------------------ACCGTTGGAGTTGGAGAT-----GAAGGGAAGAGT--TACTG--GCCCTCACTGGTT-----TCCATAAAATGAGAATCATGTCTGTTAATGTCATAACTTCACAGATCATGATATAGATAAAATTCCAAATTGCACCTTATCAGGAGGTCATTGATTACATAT---TTTACTTATAGCTTTTACGCTGTTTCTGCAGGGTGA-CATGCTTTTATGATTTCTGTAAATCGTTGTTGAATTGA-GGTGGGAAG-----ATAGATGCATGTAAAC--ATGAAATTATTT--TTAATT----TA----AAGTAACTTCCTTTTAGTTAGAGTTGGGTTTT-TTATAACTGAGTAGGGAAACATTAAAAATTGTTTTTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140356923 883 - 143122389 TGGCCAATAACCAATGATGGAAGTCTGGTTACACCTATCTAG-TCAAGCCTATCCTCACC-TACTTAAA-GG-AAAAAACACCAGCCTTACAGAGTTGCCATGAGGTGAGGATTAACCAAATATATGTGGATTCATGGTTC---TATCTGTAAAAATCCTACAAAACCTAAGTTACTATTGTGTGGGAGGAAA-----AAGTCGGGCAG---TGTGTTCTATAGTTACTGAGATTCAGGATGAGCGCTGGAGTTTTTCTTCCCCTCAGCCCTACGTTGACGCCAGACCCCCC--ACCAAATACATTGTGAGTTTATTTTCTACCAGGAGAACCATTACTGGACTGACTTTAGGAGCTTCAATGGTGATTATAATCCTGTCCATCTCATTTCTAGAAATTT-GGAATCCTAGTTGGATAAACCCAGAAATGGTTTTCCCAGCTCTTATAACAACCCTTTTCTATGGT-AAAATATT-TTGAGTTGAAGAATTATAGAGTTTCATTTGATGTCATTTCTGTAGTTGAATAAATTCAA-----------CTTGT------------GGGGAGAAAGGGCAGGGGAGGG------AA-----------------------------------ACCGTTGGAGTTGGAGAT-----GAAGGGAAGAGT--TACTG--GCCCTCACTGGTT-----TCCATAAAATGAGAATCATGTCTGTTAATGTCATAACTTCATAGATCATGATATAGAGAAAATTCCAAATTGCACCTTATTAGGAGGTCATTGATTACATAT---TTTGCTTATGGCTTTTACACTGTTTCTGCAGGGCGA-CATGCTTTTATGATTTCTATAAATAGTTGTTGAATTGATAGTGGGAAG-----ATAGATGCATGTAAAC--ATGAAATTATTT--TTAATT----TA----AAGTAACTTCCTTTTAGTTAGAGTTGGGTTTT-TTATAAATGAGTAGGGAAACATTAAAAATTGTTTTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17062220 811 - 229590362 TGGCCAATAACCTATGATGAAAGTCTGGTAACACCTATCTGG-TCAAGCCTAtcctcacc-tatttaaagggaaaaaaacactggccttacaaggttgccatgag-----gattaactaaCTGTATGTGGATTCATGGTTT---TATCTGTAAAAATCCTACAAAACCTAAGTTAC--TTGTGTGGGAGGAAA-----AGGTCGAACAG---TGTATTCTATAATGACCGAGATTCAGGATGAGTGCTGGAGTTTTTCTTTCCCTCAACCCTAT-----------------------------------------------------------------GGACCGACTTTAGGAGCTTAAATGGTGGTTACAATCCTGTCCATCTCATTTCTAGAAATTT-GGAATCCTAGTTGGATAAACCCAGAAATGGTGTTCCCAGCTCTTGTAACAACACTTTTCTATAGG-AAAAAATTGTTAAGTTGAAGAATTATAGAGTTTCATTTGATGTCATTTCTGTAGTTGAATAAATTCAA-----------CTGGT------------GGGGAGAAAAGGCAGGGGAGGG------CA-----------------------------------ACCGTTGGAGTTGGAGAT-----GAAGGGAAGAGT--TGCTG--GCCCTCACTGGTT-----TCCATAAAATGAGAATCATGCCTGTTAATGTCATAACTTCATAGATCATGGTGTAAATAAAATTCCAGATTGCACCTTGTTAGGAGGTCATCGATTACATAT---TTTACTTAAAGATTTTCCACTGTTTCTGCAGGGCGA-CATGCTTTTATGATTTCTATGAATAGTTGTTGAATTGATGGTGAGAAC-----ATAGATGCATGTAAAC--ATGAAACTATTT--TTAATT----TA----AAGTAAC------TTAGTTAGAGTTGGGTTTTGTTATAAATGAGTAGGGAAACATTAAAAATTGTTTTTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223826199 810 - 227556264 TGGCCAATAACCTATGATGAAAGTCTGGTAACACCTATCTGG-TCAAGCCTAtcctcacc-tatttaaagggaaaaaaacactggccttacaaggttgccatgag-----gattaactaaCTGTATGTGGATTCATGGTTT---TATCTGTAAAAATCCTACAAAACCTAAGTTAC--TTGTATGGGAGGAAA-----AAGTCGAGCAG---TGTATTCTATAATGACCGAGATTCAGGATGAGTGCTGGAGTTTTTCTTTCCCTCAACCCTAT-----------------------------------------------------------------GGACCGACTTTAGGAGCTTAAATGGTGGTTACAATCCTGTCCATCTCATTTCTAGAAATTT-GGAATCCTAGTTGGATAAACCCAGAAATGGTTTTCCCAGCTCTTGTAACAACACTTTTCTATAGGAAAAAAATTTTTAAGTTGAAGAAT--TAGAGTTTCATTTGATGTCATTTCTGTAGTTGAATAAATTCAA-----------CGGGT------------GGGGAGAAAGGGCAGGGGAGGG------CA-----------------------------------ACCGTTGGAGTTGGAGAT-----GAAGGGAAGAGT--TGCTG--GCCCTCACTGGTT-----TCCATAAAATGAGAATCACGCCTGTTAATGTCATAACTTCATAGATCATGGTGTAAATAAAATTCCAGATTGCACCTTGTTAGGAGGTCATCGATTACATAT---TTTACTTAAAGATTTTCCACTGTTTCTGCAGGGCGA-CATGCTTTTATGATTTCTATAAATAGTTGTTGAATTGATGGTGAGAAC-----ATAGATGCATGTAAAC--ATGAAACTATTT--TTAATT----TA----AAGTAAC------TTAGTTAGAGTTGGGTTTTGTTATAAATGAGTAGGGAAACATTAAAAATTGTTTTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16876586 807 - 220367699 TGGCCAATAACCTATGATGAAAGTCTGGTAACACCTATCTGG-TCAAGCCTATCCTCAcc-tatttaaagggaaaaaaacactGACCTTACAGAGTTGCCATGAG-----GATTAACTAACTGTATGTGGATTCATGGTTT---TATCTGTAAAAATCCTACAAAACCTAAGTTAC--TTGTGTGGGAGGAAA-----AGGTCGAGCAG---TGTATTCTATAATGACCGAGATTCAGGATGAGTGCTGGAGTTTTTCTTTCCGTCAACCCTAT-----------------------------------------------------------------GGACCGACTTTAGGAGCTTAAATGGTGGTTACAATCCTGTCCATCTCATTTCTAGAAATTT-GGAATCCTAGTTGGATAAACCCAGAAATGGTGTTCCCAGCTCTTGTAACAACACttttctatagg-aaaaaattGTTAAGTTGAAGAATTATAGAGTTTCATTTGATGTCATTTCTGTAGTTGAATAAATTCAA-----------CGGGT------------GGGGAGAAAGGGTAGGGGAGGG------CA-----------------------------------ACCATTGGAGTTGGAGAT-----GAAGGGAAGAGT--TACTG--GCCCTCACTGGTT-----TCCATAAAATGAGAATCATGCCTGTTAATGTCATAACTTCATAGATCATGGTGTAAATAAAATTCCAGATTGCACCTTGTTAGGAGGTCATCGATTACATAT---TTTACTTACAGGTTTTCTACTGTTTCTGCAGGGCGA-CATGCTTTTATGATTTctataaatagttgttgaattgATGGTGAGAAC-----ATAGATGCATGTAAAc--atgaaactattt--ttaatt----ta----aagtaac----------TTAGAGTTGGGTTTTATTATAAATGAGGagggaaacattaaaaattgttttta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82677976 812 + 85787240 tGGCCAATAACCTATGATGAAGGTCTGGTAACacctatctgg-tcaagcctatcctcacc-tatttaaagggaaaaaaacactgaccttacagagttgccatgag-----gattaactaactgtatgtggattcatggttt---tatctgtaaaAATCCCACAAAACCTAAGTTAC--TTGTGTGGGAGGAAA-----AAGTCGAGCAG---TGTATTCTATAATTACCGAGATTCAGGATGAGTGCTGGAGTTTTTCTTTCCCTCAACCCTAT-----------------------------------------------------------------GGACCGACTTTAGGAGCTTAAATGGTGGTTATAATCCTGTCCATCTCATTTCTAGAAATTT-GGAATCCTAGTTGGATAAACCCAGAAATGGTTTTCCCAGCTCTTGTAACAACACTTTTCTATAGGAAAAAAAGTTTTAAGTTGAAGAATTATAGAGTTTCATTTGATGTCATTTCTGTAGTTGAATAAATTCAA-----------CGGGT------------GGGGAGAAAGGGCAGGGGAGGG------CA-----------------------------------ACCGTTGGAGTTGGAGAT-----GAAGGGAAGAGT--TACTG--GCCCTCACTGGTT-----TCCATAAAATGAGAATCATGCCTGTTAATGTCATAACTTCATAGATCATGGTGTAAATAAAATTCCAGATTGCACCTCATTAGGAGGTCATCGAATACATAT---TTTACTTACAGGTTTTCTACTGTTTCTGCAGGGCGA-CATGCTTTTATGATTTCTATACGTAGTTGTTGAATTGATGGTGAGAAC-----ATAGATGCATGTAAAC--ATGAAACTATTT--TTAATT----TA----AAGTAAC------TTAGTTAGAGTTGGGTTTTATTATAAATGAGTAGGGAAACATTAAAAATTGTTTTTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14388822 877 - 49578535 TGACCAATAACCAGTGATGAAAGTCTGGTTAaacctctctgg-tcaagcctgtcctcacc-tatttaaatggaaaaaaacactgaccttacggagttgctgcgag-----gattaactaaatgtatgtggattcatggtt----tatctgtaaaaatcctcccaaacgtaagttaccatcatGTGGGAGTAAA-----AAGTCAGGCAG---TGTATTCTACCATTACTGAGACTCAGGATGAGTGCTGGAG-TTTTCTTTCCCTCTGCCCTCTGTCGCTGCCAGACCCCCC--ACCAAATACACTGTGAGTTTGTTTTTTACCGGGAG-ACCATTACTGGACTGACTTTAGGATCTTTGATGGTGATTATAATCCCGTCCATCTGAACTCGTGAAATTTGGGAATCTTACTTGGATAAACACAGAAACGGTTTTCCCAGCTCTTGCAACAACCCTTTTCTATGGG-GAAAAAAT-TCAAGTTGAAGAATTACAGAGTTTCATTTGATGTCATTTCTGTAGTTGAATAAATTCAA-----------CTTGT------------GGAGAGAAAGGGCAGGGGAGGG------AA-----------------------------------GCCGCT-GAGTTGGAAAT-----GAAGG--AAAGT--TACTG--GCCCTTACTGGTT-----TCCGTACAAGGGGAGTCGTGTCTGTTAATGCGGGGACTTCGTAGATTGTGATGTAGATATAATTCCAAATTGCACCTTGTTAGG-GGTCA-CGATGACACAT---TTTACTCGTGGCTTTTACACTGTTGCTGCAGGGCGA-CATGCTTTTATGATCTCTCTACGTAGTTGTTGAATTGATAGTGGGAA--------AGATGAATGTAAACATATGAAATTATTT--TTAATT----TAAATGAAGTAACTTCCTTTTAGTTAGAGTTGGGTTTTATTATAAATGAGTAGGGAAACGTTAAAAATTGTTTTCA i calJac3.chr19 I 4 C 0 s mm10.chr1 178884883 803 + 195471971 TCACCAATGA-CAATGGTGA----CCAGTTAA--TGATCTGGTTCACTTCCATTTTTATCAGATTTAAGTGG-AAACAGCATTTGCCTCACACAATTGCCATGAG--------TAACTA--TGTAGGGGACATTTTGTTTC---AACCCATAAAAATCCT-TTAAATGCAAATTAC--CACTGTGGGAGAAAC-----TGGGGACTCAGGGATGTCCCCCGAAGTGCCTGAGATTCATGGCAAATCCTTGC-TTTCTCCTTTCTTCTGATTTAAATTGATAACAGACACCCA----------------GACACTGTCCCCCACCAGGA-----------GGAT---CTTCAGGGAATTACTTGGTGGTTATAATCCTTATTGTACCCCTTCTTGAAATT--GGTATCCCAGCCACATAAACCCCAGGGTAGCATTCCCTGTCCTTGTAAGGACC----------GG--------T-TCAAGGTGAGGGTTTATGATGTTCTATG-------ATTTCTACTGTGAAATAGCTCAGAATATTGGGGGCCTGGC------------AAAGAAAAAGGTCATGGTGGGGTAGAACTA-----------------------------------ACTGTAGAGGCTGAGGATCTTCCAAAGACAAAAATTCTACAG--GACCTGGTTGACT-----TCCAGAAAATGAGAATCAGGTCTTTGAACGT-ACAACTTCCAGGGCCATCGTGTAGATACAGTTCAAAATGCCACCTTGC-----AGTCACTGACTAGGTA-------------------------------GTAAGTAGATCATGCC----TGGTTTATTCAAA---TTATTGAATTGTTGGTGGGAGA-----GCTGGGACATGGAAGCATATGGAAGTCTTTGATTAGGT----AA----AGGTAACTTCCT-CTGGTTACAGTTCGGTTCCACTGTAAACAAATAGGGAAACCCTGTGAGTTGTTTGTA i mm10.chr1 C 0 C 0 s canFam3.chr7 36469323 893 + 80974532 -TAGTGGTAATTAATAATGA------------GCCTACCTGG---------------ATC-TACTTCATGGG---ATAACACC-----TACAGAGTTGCCATAAG-----GAGTAAGCAAATGGACATGCTATCGTTTTTTGTAAATCTGT-AAAATCCTGC-AAATATAAGTCACTGTCATGTGGGAGGAGAAAGGTAAGTCAGGCCA---TTTGTTCTACCATGAGTGAGATTCAGGACGAGTCATTGTG-TTCTCCTACCCTCTGCCCTAAGGGGATGCCA-----------------ACACTGTGATTTACTTCTCCACCAGGAGGACCATTTGTACACTGACTTGAGGAGTTTAGATAGCAGACATAATCCTATCTGTCTCAACTCTTGAAATTT-GGAAACCTAGCTGGATAAACCCAGAAATGGTTTTCCCAGCCCTTGTGAGGGCCCTTCCCAGTGACAAAAGTATT-TCAA---GAAGGTTTATAAAGTTTTATTCAGGATCATTTCTGCAGTTGAATAAACTCAA-----------CTTGTAATTACaagagaggaaggaagggagggaggaagg------aagggaggaaggaaggaaAAGAAAGATCTGTACTGGTATTGTCAGGGTTGCTGAC--TTAGAAAGAAAGAGT---ACTG--GCCTCAGTTGGTTTCTTGTCCATAAAAAGGGGACCATGTCTATTAATGTAATAA-----TAGATCATGATGTTAATAAAATTCAAAATACCATGTTAT----AGGTCACTGATTATATATTAGTGTATCTGTATCTCTTACATTATTTCTGTGGAGTGT-TGTGCTTCTAGGATTTCAGTAAATATTTGTTGAATTGGTGATGGGGACAGGGAACGGATGAATGTAAGCATGTGAAATTATTT--TTACTTCCGACA----AAGCAACTTCCTTTTGATTTGAGTTGAATTTCATTGTAAACATACAGGGAATCATTGAGAATTGTTTTTA i canFam3.chr7 C 0 C 0 a score=247760.000000 s hg38.chr1_KI270759v1_alt 342671 82 + 425601 Tggcccagcgtggtggctcacacctatattcctggcactttgggaggctgaggcgggaggattgc--------------ttgagaccagcctgggc s panTro4.chr1 225098380 82 + 228333871 Tggcccagcgtggtggctcacacctatattcctggtactttgggaggctgaggtggcaggattgc--------------ttgagaccagcctgggc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226468610 96 - 229942017 Tggcccagcgtggtggctcacacctatattcctggcactttggggggctgaggcgggaggattgcttgagcccaggagtttgagaccagcctgggc i ponAbe2.chr1 C 0 I 3698 s nomLeu3.chr5 140357806 96 - 143122389 Tggcccagcgtggtggctcacacctgtattcctggcactttgggaggctgaggcgggaggattgcttgagcccaggagtttgagaccagcctgaag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17063031 96 - 229590362 Tggcccagcgtggtggctcacacctgtattttcagcaacttgggaggctgaggcgggaggattgcttgagcccagtagttcgagaccagcctcggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223827009 96 - 227556264 Tggcccagcgtggtggctcacacctgtatttccagcactttgggaggctgaggcgggaggattgcttgagcccagtagttcgagaccagcctgggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16877393 96 - 220367699 tggcccagagtggtggctcacacctgtatttccagcactttgggaggctgaggcaggaggattgcttgagcccagtagtttgagaccagcctgggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82678788 96 + 85787240 Tggcccagagtggtggctcacacctgtatttccagcactttgggaggctgaggcgggaggattgcttgagcccagtagttcgagaccagcctgggc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14389699 96 - 49578535 Tggcccagcgtggtggctcatacctgtattcccagcacttcgggaggcggaggcgggaggattgcttgagcccaggagtttgagaccagcctgggc i calJac3.chr19 C 0 C 0 s canFam3.chr7 36470216 18 + 80974532 -----------------------------------------------------------------------TCAATAGTTTGAGGGCAG------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178885686 0 + 195471971 C a score=503072.000000 s hg38.chr1_KI270759v1_alt 342753 214 + 425601 agcatggcaaaaacctgtctctacaaaaaatacaaaaattaaccgggcatggtgttgcatggttgtagtcccagctacttgggaggctgaggtggaagggtggcttgagtccaggaggcagaggctgcagtgagttgagattgcgctactgcaccagcctgggcaacagagtgagaccctgtctcaaaa-------aaaaaaa------aataaaTGAAAGTTTGTA s panTro4.chr1 225098462 220 + 228333871 agcatggcaaaaacctgtctctacaaaaaatacaaaaattagccgggcatggtgttgcgtggttgtagtcccagctacttgggagactgaggtggaagggtggcttgagtccaggaggcagaggctgcagtgagttgagattgtgctactgcaccagcctgggcaacagagtgagaccctgtctcaaaa-------aaaaaaataaataaataaaTGAAAGTTTGTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226472404 205 - 229942017 agcatggcaaaaacctgtctctacaaaaaatacaaaaattagccgggcatgttgttgcatggttgtagtcccagctacttgggaggctgaggtggaagggtggcttgagtccaggaggcagaggctgcagtgagttgagatcgcgctgctgcaccagcctgggaaacagagtgagaccctgtcttaaaa-------aaaaaaa---------------aaGTTTGTA i ponAbe2.chr1 I 3698 C 0 s nomLeu3.chr5 140357902 212 - 143122389 agcatggcaaaaacctgtctctacaaaaaatacaaaaattagctgagcatggtgttgcatggttgtagtcccagctacttgggaggctgaggtggaagggtggcttgagtccaggaggcagaggctgcagtgagttgagatcgtgctactgcatcagcctgggcaacagagtgagaccctgtctcaaaa-------aaaaaaa--------aaaaaaaaaGTTTGTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17063127 214 - 229590362 cacatggcaaaaacctgtctctac-aaaaatacaaaaatcagccaggcgtggtgttgcatgcctgtagccccagctgcttgggaggctgaggtggaagggtaaattgagcccaggaggcagaggctgcagtgaattgagatcatgctactgcaccagcctgggcaacagagtgagaccctgtctcaaaa-------aaaaaag-----aaaaaagaaaaaaTGTGTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223827105 220 - 227556264 cacatggcaaaaacctgtctctac-aaaaatacaaaaatcagccaggcgtggtgttgcatgcctgtagtcccagctgcttgggaggctgaggtggaagggtcaattgagcccaggaggcaga-gctgcagtgagttgagatcatgctactgcaccagcctgggcaacagagtgagaccctgtctcaaaaaaaaaagaaaaaag-----aaaaaagaaaaaaTTTGTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16877489 214 - 220367699 cacatggcaaaaacctgtctctac-aaaaatacaaaaatcagccaggcatggtgttgcatgcctgtagtcccagctgcttgggaggctgaggtggaagggtcacttgagcccaggaggcagaggctgcagtgagttgagatcatgctactgcaccagcctgggcaacagagtgagaccctgtctcaaaa-------aaaaaag-----aaaaaagaaaaaatttgta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82678884 220 + 85787240 cacatggcaaaaatctgtctctac-aaaaatacaaaaatcagcccagcgtggtgttgcatgcttgtagtcccagctgcttgggaggctgaggtggaagggtcacttgagcccagggggcagaggctgcagtgagttgagatcacgctactgcaccagcctgggcaacagagtgagaccctgtctcaaaaaaaaaa-agaaaag-----aaaaaagaaaaaaTTTGTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14389795 179 - 49578535 aacgtggggaaaacttgtctcgac-----atac----attagctctgcgtggtggtgcatgcttgtagacccagctactggggaggctggggc------gttgcttgagcccaggagccagag------gggagttgagatcacgctactgcaccagcctgggcaacagagtgagaccccatctcaaaa-------aa--------------------aaGTTTGGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36470234 89 + 80974532 --------------TTGTT----------------AAATTAAACATACGTAGT----------CATAGTATCAGCTA----------------------------------------------GTCACAGTGACCAGACAC----CTGCTCCCTTGGGAGGGCTGACAAAATGTG----------AAAG-------------------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178885686 0 + 195471971 C a score=2912884.000000 s hg38.chr1_KI270759v1_alt 342967 966 + 425601 TTAATCGTTCAA-GCTTCGTGTTA-ATTAAGCATATTTTTAACAT--GCTGGCCCTACCAACTGGCTACCTGCCCTCCTGGGAGA------CATCTCCA-------CTCACCAGTCCCTGCAGACAGCTGCCTGCCTTCATTCCAGGAGTCCCCTTCCTTCTATT-CTGGCACCAAGAGAGTGATCATTAAAGTGTTTCTGTGTCTCAAGTAAG---CAGAC-TAGCTTCCATGCAGTGTCAGCACAAGACCCAATCCTGGAGCTGTCCCGTGGCCTGGTTGAGCTGTTGATGGCGTGGGTACAGAC--T--CACCAGCTGCCCTTGCCCTGCCCTGCCTAACACAACTCATCGAGACCTTGCTGGG-------TTGCCTGGTGCTGG-AAACACGGTGGCCCTGGCCATCCAGCCAGC--GCTGTCCTTCCCAAAACATCCATTGGCCAGTGCGTTTGTTCTGTCACCCCTCAGTGTCC-TAATGCCCTTCATTGTACGTGATCTTAAAAAGACCCTTGCCGAAATGTTTTCTCCGAGTCTGGACCACGGCCTAGAT----TCAATATTTGGCATCTGCAAATGTACATTTACAAAGTGATTCATCA----ACTAGAAACTGTCCTCTTTtgaggtacaggaagataaggcaaaggtttactcaaatcacccagccagtgggtggcagGATCAAACTGCCTCGCTCCTCACAGCTTCAGAGGCCTCGACAGTTCCCAGCC-TCACTGCAGACCCACG----------CCCACT---TCTCATCAAGCTCCCGAAATGTCGGA-----GCTGCCTTCACTGCGCACG----GCAGGGGA-GCCCAG--CACAGCAGGAAAGCCCCGATTTCTTTGATCAAT----TCCGTCAGTGCTCTGAAGCCACATTATGCAGCATTTTGTTAGCATACTAAACACCTTCAGGGTGTCAAGCCTTGTCTTTGCAGTGCGTTCCTTAGAGAAGTGGAAGTTTCCTGCCCTTGAGGTTTCCTCTTACTCCTCCTGCTCACTTACGGAGGG s panTro4.chr1 225098682 966 + 228333871 TTAATCGTTCAA-GCTTCGTGTTA-ATTAAGCATATTTTTAACAT--GCTGGCCCTACCAACTGGCCACCTGCCCTCCTGGGAGA------CATCTCCA-------CTCACCAGTCCCTGCAGACAGCTGCCTGCCTTCATTCCAGGAGCCCCCTTC----TATT-CTGGTACCAAGAGAGTGATCATTAACGTGTTTCTGTGTCTCAAGTAAG---CAGAC-TAGCTTCCATGCAGTGTCAGCACAAGACCCAATCCTGGAGCTGTCCCGTGGCCTGGTTGAGCTGTGGATGGCGTGGGTACAGAC--T--CACCAGCTGCCCTTGCCCTGCCCTGCCTAACACACCTCATGGAGACCTTGCTGGG-------TTGCCTGGTGCTGG-AAACACGGTGGCCCTGGCCATCCAGCCGGC--GCTGTCCTTCCCGAAACATCCATTGGCCAGTGCGTTTGTTCTGTCACCCCTCAGTGTCC-TAATGCCCTTCATTGTATGTGATCTTAAAAAGACCCTTGCCGAAATGTTTTCTCCGAGTCTGGACCACGGCCTAGAT----GCAATATTTGGCATCTGCAAATGTACATTTACAAAGTGATTCATCA----ACTAGAAACTGTCCTCTTTTGAGGTACAGGAGGATAAGGCAAAGCTTTACTCAAATCACCCAGCCAGTGGGTGGCAGGATCAAACTGCCTCGCTCCTCACAGCTTCAGAGGCCTCGACGGTTCCCAGCCCTCGCTGCAGGCCCA-G----------CCTACT---TCTCATCAAGCTCCCGAAACGTCGGA-----GCTGCCTTCACTGCGCACGCACGGCAGGGGA-GCCCAG--CGCAGCAGGAAAGCCCCGATTTCTTTGATCAGT----TCCGTCAGTGCTCTGAAGCCACATTATGCAGCATTTTGTTAGCATACTAAACACCTTCAGGGTGTCAAGCCTTGTCTTTGCAGTGGGTTCCTTAGAGAAGGGGAAGTTTCCTGACCTTGAGGTTTCCTCTTACTCCTCCTGCTCACTTACGGAGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226472609 967 - 229942017 TGAATCGTTCAA-GCTTCTTGTTA-ATTAAGCATATTTTTAACAT--GCTGGCCCTACCAACTGGCCACCTGCCCTCCTGGGAGA------CACCTCCA-------CTCACCAGTCCCTGCAGACAGCTGCCTGCCTTCATTCCAGGAGTCCCCTTCCTTCTATT-CTGGCACCAAGAGAGTGATCATTTAAGTGTTTCTGTGTCTCAAGTAAG---CAGAC-TAGCATCCATGCGGTGTCAGCACAAGACCCAATCCTGGAGCTGTCCCGTGGCCTGGTTGAGCTGTTGATGGCGTGGGTACAGAC--T--CACCAGATGCCCTTGCCCTGTCCTGCCTAACACACCTCATTGAGACCTTGCTGGA-------TTGCCTGCTGCTGG-AAACACAGGGGCCCTGGCCATCCAGCCAGC--GCTGTCCTTCCCAAAACATCCATTGGCCAGTGCGTTTGTTCTGTCACCCCTCAGTGTCC-TAATGCCCTTTATTGTACGTGATCTTAAAAAGACCCTTGCTGAAATGTTTTCTCCGAGTCTGGACCTCAGCCTAGAT----TCAATATTTGGCATCTGCAAATTTACATTTACAAAGTGATTCATCA----ACTAGAAACTGTCCTCTTTtgaggtacaggaagataacgcaaagatttactcaaatcacccagccagtgggtggcagGATCAAACTGCCTCGCTTCTCACAGCTTCAGAAGCCTTGGCAGTTCGGAGCCCTCGCTGCAGACCCACG----------CCCACT---TCTCATCAAGCTCTCTAAATGTCGGA-----GCTGCCTTTGCTCCGCACG----GCAGGGGA-GCCCAG--CACAGCAGGAAAGCCCCGATTTCTTTGATCAGT----TCCGTCAGCGCTCTGAAGCCCCATTATGCAGCATTTTGTTAGCATACTAAACACCTTCAGGGTGTCAAACCTTCTCTTTGCAGTGGGTTCCTTAGAGAAGGGGAAGTTTCCTGCCCTCGAGGTTTCCTCTTACTCCTCCTGCTCACTTACGGAGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140358114 967 - 143122389 TTAATCGTTCAA-GCTTCTTGTTA-ATTAAGCATATTTTTAACAT--GCTGGCCCTATCAACTGGCCACCTGCCCTCCTGGGAGA------CACCTCCA-------CTCACCAGTCCCTGCAGATAGCTGCCTGCCTTCATTCCAGGAGTCCCCTTCCTTCTATT-CTGGCACCAAGAGAGTGATCATCAAAGTGTTTCTGTGTCTCAAGTAAG---CAGAC-GAGCATCCATGCAGTGTCAGCACAAGACCCCGTCCTGGAGCTGTCCCGTGGCCTGGCTGAGCTGTTGATGGCGTGGGTACAGGC--T--CAGCAGCTGCCCTTGCCCTGCCCTGCCTAGCACACCTCATCGTGACCTTGCTGGG-------TTGCCTGGTGCTGG-AAACACGGTGGTCCTGGCCATCCAGCCAGC--GCTGTCCTTCCCAAAACGTCCATTGGCCAGTGCGTTTGTTCTGTCACCCCTCAGGGTCC-TGATGCCCTTTATTGTACGTGATCTTAAAAAGACCCTTGCGGAAACGTGTTCTCCGAGTCTGGACCGCAGCCTAGAT----TCAATATTTGGCATCTGCAAATTTACATTTACAAAGTGATTCATCA----ACTAGAAACTGTCCTCTTTtgaggtacaggaagataaggcaaagatttacccaaatcacccagccagtgggtggcagGATCAAACTGCCTCCCTTCTCACAGCTTCAGAGGCCTTGACAGCTCGGAGCCGTCGCTGCAGACCCACG----------CCCACT---TCTCATTGAGCTCTCTAAATGTCGGA-----GCTGCCTTTGCTGCGCGCG----GCAGGGGA-GCCCAG--CACAGCAGGAAAGCCCCGATTTCTTTGATCAGT----TCCGTCAGCGCTCTGAAGCCACATTATGCAGCATTTTGTTAGCATACTAAACACCTTTGGGGTGTCAAACCTTGTGTTTGCAGTGGGTTCCTTAGAGAAGGGGAAGTTTCCTGCCCTTGAGGTTTCCTCTTACTCCTCCTGCTCACTTACGGAGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17063341 956 - 229590362 TGAATTGTTCAA-GCCTCTTGTTA-ATTAAGCATATTTTTAACAT--GCTGGCCCTACCACCGGGCCGCCTGCGCTCCTGGGAGA------CACCTGCA-------CTCACCAGGCCCTGCAGACAGCTGCCTGCCTTCATTCCAGGAGTCCCCTTCCTTCTATT-GTGGCACCGAGAGAGTGATCATTAAAGTGTTTCTGGGTCTCAAGCA-----CAGAC-TAGCATCCACGCGGTGTCAGCACAAGACCCAGTCCTGGAGCTGTCCCGTGGCCTGGTTGAGCTATTGATGGCGTGAGTATAGAC--T--CACCAGCTGTCATTGCCCTGCCCTGCCTAACACACCTCATCGAGACCTTGCCGGG-------TTGCCTGGTGCCGG-AAACATGGCGG-CCTGGCTGTCCAGCCAGC--ACTGTCCTCCCCGAAACATCCATTGGCCGGTGCATTTGTTCTGCCACCCCTCAGTGTCCTTAATGCCCTTTACTGTGCGTGATCTTAAAAAGACCCTTGCTGTCATGTTTTCTCTGAATCTGGGCCACAGCCTAGAT----TCAGTATTTAGCATCTGCAAATTTACATTTACAAAGTGATTCATCA----ACTAGAAACTGTCTTCTTTTGAGGTACAGAGAGATAAGGTGAAGATTTACTCAAATCACCCGGCCAGTGGGTGGCGGGATCAAACTGCCTCCCTTTTCACAGCTTCAGAGGCCTTGACAGTTCAGAG------CTGCAGACCCACG----------CCCCCT---TCTCATCAAGCTCTCTAAA-GTCGGA-----GCTGCCTTTGCTCCGCACG----GCAGGGGA-GCCCAG--CACAGCAGGAAGGCCCAGATTTCTGGTATCAGC----TCCATCAGCACTCTGAA-CCACATTATGCAGCATTTTGTTAGCATACTAAACACCTTCAGGGTGTCACACCTTGTCTTTGCAATGGGTTCCTTAGAGAAC-GGAAGTTTCCTGCCCTTGCGGTTTCCTGTTACTCCTCCTGCTCACTTACGGGGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223827325 956 - 227556264 TGAATTGTTCAA-GCCTCTTGTTA-ATTAAGCATATTTTTAACAT--GCTGGCCCTACCACCGGGCCGCCTGCGCTCCTGGGAGA------CACCTGCA-------CTCACCAGTCCCTGCAGACAGCTGCCTGCCTTCATTCCAGGAGTCCCCTTCCTTCTATT-GTGGCACCGAGAGAGTGATCATTAAAGTGTTTCTGGGTCTCAAGCA-----CAGAC-TAGCATCCACGCGGTGTCAGCACAAGACCCAGTCCTGGAGCTGTCCCGTGGCCTGGTTGAGCTATTGATGGCGTGAGTATAGAC--T--CACCAGCTGTCCTTGCCCTGCCCTGCCTAACACACCTCATCGAGACCTTGCTGGG-------TTGCCTGGTGCCGG-AAACATGGCGG-CCTGGCTGTCCAGCCAGT--ACTGTCCTCCCCGAAACATCCATTGGCCGGTGCATTTGTTCTGCCACCCCTCAGTGTCCTTAATGCCCTTTACTGTGCGTGATCTTAAAAAGACCCTTGCTGTCATGTTTTCTCTGAATCTGGGCCACAGCCTAGAT----TCAGTATTTAGCATCTGCAAATTTACATTTACAAAGTGATTCATCA----ACTAGAAACTGTCTTCTTTTGAGGTACAGAAAGATAAGGTGAAGATTTACTCAAATCACCCGGCCAGTGGGTGGCGGGATCAAACTGCCTCCCTTTTCACAGCTTCAGAGGCCTTGACAGTTCAGAG------CTGCAGACCCACG----------CCCCCT---TCTCATCAAGCTCTCTAAA-GTCGGA-----GCTGCCTTTGCTCCGCACG----GCAGGGGA-GCCCAG--CACAGCAGGAAGGCCCAGATTTCTGGTATCAGC----TCCATCAGCACTCTGAA-CCACATTATGCAGCATTTTGTTAGCATACTAAACACCTTCAGGGTGTCACACCTTGTCTTTGCAATGGGTTCCTTAGAGAAC-GGAAGTTTCCTGCCCTTGCGGTTTCCTGTTACTCCTCCTGCTCACTTACGGGGGG i macFas5.chr1 C 0 I 236 s papAnu2.chr1 16877703 954 - 220367699 tGAATTGTTCAA-GCCTCTTGTTA-ATTAAGCATATTTTTAACAT--GCTGGCTCTACCACCGGGCCGCCTGCGCTCCTGGGAGA------CACCTGCA-------CTCACCAGTCCCTGCAGACAGCTGCCTGCCTTCATTCCAGGAGTCCCCTTCCTTCTACT-GTGGCACCGAGAGAGTGATCATTAAAGTGTTTCTGGGTCTCAAGCA-----CAGAC-TAGCATCCATGCGGTGTCAGCACAAGACCCAGTCCTGGAGCTGTCCCGTGGCCTGGTTGAGCTGTTGATGGCGTGAGTATAGAC--T--CACCAGCTGtccttgccctgccctgcctaACACACCTCATCGAGACCTTGCTGGG-------TTGCCTGGTGCCGG-AAACATGGCGG-CCTGGCTGTCCAGCCAGC--ACTGTCCTCCCTGAAACATCCATTGGCCGGTGCATTTGTTCTGCCACCCCTCAGTGTCCTTAATGCCCTTTACTGTGCATGATCTTAAAGAGACCCTTGCTGTCATGTTTTCTCTGAATCTGGGCCACAGCCTAGAT----TCAGTATTTAGCATCTGCAAATTTACATTTACAAAGTGATTCATCA----ACTAgaaactgtcttcttttgaggtaCAGAAAGATAAGGTGAAGATTTACTCAAATCACCCGGCCAGTGGGTGGCGGGATCAAACTGCCTCCCTTTTCACAGCTTCAGAGGCCTTGACAGTTCAGAG------CTGCAGACCCACG----------CCCCCT---TCTCATCAAGCTCTCTAAA----GGA-----GCTGCCTTTGCTCCACACG----GCAGGGGA-GCCCAG--CACAGCAGGAAGGCCCAGATTTCTGGTACCAAT----TCCATCGGCGCTCTGAAGCCACATTATGCAGCATTTTGTTAGCATACTAAACACCCTCAGGGTGTCACACCTTGTCTTTGCAATGGGTTCCTTAGAGAAG-GGAAGTTTCCTGCCCTTGCGGTTTCCTGTTACTCCTCCTGCTCACTTACggggga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82679104 957 + 85787240 TGAATTGTTCAA-GCCTCTTGTTA-ATTAAGCATATTTTTAACAT--GCTGGCCCTACCACTGGGCCACCTGCGCTCCTGGGAGA------CACCTGCA-------CTCACCAGTCCCTGCAGACAGCTGCCTGCCTTCATTCCAGGAATCCCCTT-CTTCTATT-GTGGCACCGAGAGAGTGATCATTAAAGTGTTCCTATGTCTCAGGCA-----CAGAC-TAGCATCCATGCGGTGTCAGCACAAGACCCAGTCCTAGAGCTGTCCTGTGGCCTGGTTGAGCTATTGATGGTGTGGGTACAGAC--T--CACCAGCTGTCCTTGCCCTGCCCTGCCTAACACACCTCATCAAGACCTTGCCTGG-------TTGCCTGGTGCCGG-AAACATGGCGG-CCTGGCCATCCAGCCAGC--ACTGTCCTCCCCGAAACATCCATTGGCCAGTGCATTTGTTCTGCCACCCCTCCGTGTCCTTAATGCCCTTTATTGTGCGTGATCTTAAAAAGACCCTTGCCGTCATGTTTTCTCTGAATCTGGGCCACAGCCTAGAT----TCAATATTTAGCATCTGCAGATTTACATTTACAAAGTGATTCATCA----ACTAGAAACCGTCCTCTTTtgaggtacagaaagataaggtgaagatttactcaaatcacccggccagtgggtggcagGATCAAACTGCCTCCCTTTTCACAGCTTCAGAGGCCTTGACAGTTCAGAG------CTGCAGACTCACG----------CCCCCT---TCTCATCAAGCTCTCTAAA-GTGGGA-----GCTGCCTTTGCTCCACACG----GCAGGGGA-GCCCAG--CACAGCAGGAAGGCCCAGATTTCTGGTATCAGT----TCCATCAGCGCTCTGAAGCCACATCATGCAGCATTTTGTTAGCATACTAAACACCTTCAGGGTGTCACACCTTGTCTTTGCAGTGGGTTCCTTAGAGAACGGGAAGTTTCCTGCCCTTGCGGTTTCCTGTTACTCCTCCTGCTCACTTACGGGGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14389974 923 - 49578535 TTTACCGTTGAA-GCCTCTTGTTA-ATTAAGCATATTTTTAACATCAGCTGGCCCTACCAGCTAGCCACGTGCCCTCCCGGGTGA------CAC---CA-------CTC-CCAGTCCCTGCAGACAGCTGCCTGCCTTCATTCCCAGAGTCCCCTTCCTTCTATT-CAGGCACTGAGAGAATGATTCGTGAAGTGTTTCTGTGTCTCAAGTAAGCA-CAGAC-TAACATCCGCGTTGCACCAGCACAAGACCCAGTCCCGGAGCCGTCCCGCGGCATGGTTCAACTCTTGGTCACAGGGATACAGACTGT--CACCAGCTGCCCTTGCCCTGCTGTGCCT--CACACCTCATCCAGACCTTGCTGGG-------CCGCCTGGTGCCGG-AAACACAGTGG-CCTGGCCGTGCAGCCAGG--GCCGTCCTCCCCGCAACATCCACCGGCAGGTGCGAAAGTTC---CATCCCTCCGTGTCCTTAATGTCTCTTATT-----------------GACCCTTGCCGTAATGTTTTCCCTGAGCCTGG-CCACTGCCTAGGT----TCAATATTTGGCATCTGCAAATTTACATTTGCAAAGTGATTAGTCC----ACTAGAAACTGTCCTCTTTTGAGGTACCGGAAGATAAGGGAAAGATGTACTCAAGTCACCCAGCCGGTGGGCGGCAGGATCAAACTGCC-CCCTCCTCACAGCTTCAGAGGCCCGGACAGTCCCCACCGC---CTGCAGACCCACG----------CCC-CT---TCTCTGTACACTCTATAAT-GCAGGA-----GCTGCCTTTGCTCAGCACA----GCAGGGGA-GCCCAGCACACAGCAGGGGAGCCCCGGCTTCTTTTATCAAG----TCC-TGAGCGCTCTGAAGCCACTTTAGGCGGTATTTTGTTAG-----------CTTTCAGGGTGTCAAACCTTGTGTTTGCAATGGGTTCCTTAGAGAAGGGGAAGTTCCCTGCGCATTTGGCTTCCTCTTACTCCTCCTGCTCACTTA------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178885686 934 + 195471971 TTACTAGTTCAAGGTCTCTTGTTAGGTTAAACATATTTATAACATCGGCTAGTCCTAATGGCCAGCCACCTGCCCTCTTGGGAAAGCTGACAAACTGTAGTAGAATGTCACCAGCCCCTCCGGACA---TCCTG-CTTGATTCTGAGAGT--CCTTCCTAACATT-TCGG--CCACACAGGTGATAAGCAAAGTGTT--TGTATTGTATGTAAACATAAGCT-TAACATAAATGTTGTGTCTGCATGAGACCACGTCAAGGAGTGGTCCCCTGACCCTAA-AAGCCATTAGC--TGTGGACACAAGC--TTCCATCAG-TGACCTTG----GTCCTGCCTAACAAA--TCACCAAAAGCTTGCTGGGAAGCACACTGCTCAGTGTCAACAAGCATAGTGG-CCTGAGCAGCCA--------------------------TCTAATGACCAGGGAATCTGTCCTGCCATCCTTTGGT---CATAGTGTCCGCCATCTTGCAGAAGCTCTGAAAGACTTCTGTTCTGACATTTTCTTGTATTCTCAGCCACGGCATAGACTTAGTTAGTATTTGG-GTCTGTGAATCT-CAATTGCAAACTGATTGATCAGTCGACTAGAAACAATTTTTTTCAGA-ATACAGGAAGGTAAGACAAAGATTTACTCAAATCTGCCAGGCAGTTGGTGACAAGATCAAACTGTGTGGCTTTTCCCAGTTTGGGA------GACAGTTAGTCG------TTGAGGTCAAGTGTCTGGCTGGTCTCTGC---TCTCATCAAGCTCT------GCCTGATATTGGCTGCCTCT-----ACACA----TCAGGGT--GTTCAG--CCCAGCAGGACGGTCGACATTCCCTTCATCAGA------AGACAGCACTCTAGAGCCATGCTGTGCTGCATTATATTAGCAGACTAAAC-CTTTCTGGGCAGCAAGCCTTATCTTTGCTTTGGCTTTCCCGGCAAGG-GTATGTTTCTTG-GCTGCTGGCTTCCTAGTG----TTCTGTTCACTTTCAGG--- i mm10.chr1 C 0 C 0 s canFam3.chr7 36470323 787 + 80974532 ----------------------------------------------------------------------------------------------CTCCA-------CTCACTGTTCCCTGCAGACGTATGTCTG-CTTCAGTTCCAGAGTTTTCTTCCTTCAAGTGCTAGCTCTGTGGGAGTGATGATTACATTGTCTGGGTGTGTGAAGTCAG---CAGACTTGACATGAGTTTAGAGTCTGCCCAAGACCT---------------------------------------------------GAC--T--CACCATCAG----------GACCCTCCTGA-AGACCTCCTGGGCCCCT-----AG-------TTGCTCAGGGCTGGGAAATGTGATGG-CCTGGCAACATGGCGGCCTGGCCGTCCTCCTCAAAACACTCATTTACCAGTGCCTCG--TCTAGCATAACCTTGGGCCT-TCATGTTCCTCCTATTGTTTGAACCTTAGAAGATCCTCGCTGGCCTAGCATCTC--AGCTGCAGCCTCAGCATATAT----TCAGTATTTGACGTCTGCAAAT-CACCTTTGCAAAGTGATTCATCA----ATTAGAAACTCTCCTTTCTCAAGGTCCAGGAAAAGAAGACCAAGATTTACTTGGATTGCCGAGCCAATTGGTGGCAGGATCAAACTGCCTCAGTTTCCACAGT---------------AGGTCCCAGCCCACTTAGCCAGTCCACC----------ACCCCCAAGCCTCATCAAGCTCCCTAAT-ATATTA-----ACAGCCTGGGCTGCAAACA----GCATGGGACCCCCAG--CCCAGCAGGAGGGCCCAGATATCCTTTATTAATTAATTCAGTCAAGGCCCTAAAGCCACATTATGTGGCATTTCATTAGCATGCTAAACACCTTTC-AGTGTCAGACCTCATCATTTCTGAG--------AGGGAGG-GGAGGTTTCCTGCCTGGGCAGCTTTCTCTCA---TTCTTGCTCGCTCAC------ i canFam3.chr7 C 0 C 0 a score=309.000000 s hg38.chr1_KI270759v1_alt 343933 3 + 425601 T--GG s panTro4.chr1 225099648 3 + 228333871 T--GG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226473576 5 - 229942017 TGAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140359081 3 - 143122389 T--TG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17064297 2 - 229590362 ---AG i rheMac3.chr1 C 0 I 38 s papAnu2.chr1 16878657 2 - 220367699 ---ag i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82680061 2 + 85787240 ---AG i chlSab2.chr25 C 0 I 1 e mm10.chr1 178886620 0 + 195471971 C e canFam3.chr7 36471110 0 + 80974532 C e calJac3.chr19 14390897 0 - 49578535 C e macFas5.chr1 223828281 236 - 227556264 I a score=848.000000 s hg38.chr1_KI270759v1_alt 343936 4 + 425601 CGGG s panTro4.chr1 225099651 4 + 228333871 CGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226473581 4 - 229942017 CGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140359084 3 - 143122389 -GGG i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16878660 3 - 220367699 -aaa i papAnu2.chr1 I 1 I 2 s chlSab2.chr25 82680064 3 + 85787240 -AAA i chlSab2.chr25 I 1 I 2 s calJac3.chr19 14390897 2 - 49578535 --GG i calJac3.chr19 C 0 C 0 s mm10.chr1 178886620 3 + 195471971 -GGA i mm10.chr1 C 0 C 0 e canFam3.chr7 36471110 0 + 80974532 C e rheMac3.chr1 17064299 38 - 229590362 I e macFas5.chr1 223828281 236 - 227556264 I a score=67880.000000 s hg38.chr1_KI270759v1_alt 343940 38 + 425601 G---GGAACA-AAAATAG-AAAACCAAATTCCATATTCTCTTT s panTro4.chr1 225099655 38 + 228333871 G---GGAACA-AAAATAG-AAAACCAAATTCCATATTCTCTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226473585 41 - 229942017 GGGTGGAACA-AAAATAG-AAAACCAAATTCCATATTCTCTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140359087 38 - 143122389 G---GGAACA-AAAAAAG-AAAACCAAATTCCATATTCTCTTT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223828517 37 - 227556264 ---AGAAACA-AAGATAG-AAAACCAAATTCCATCTTCTCTT- i macFas5.chr1 I 236 C 0 s papAnu2.chr1 16878665 37 - 220367699 ---agaaaca-aagatag-aaaaccaaattccatcttctctt- i papAnu2.chr1 I 2 C 0 s chlSab2.chr25 82680069 37 + 85787240 ---ACAAACA-AAGATAG-AAAACCAAATTCCATCTTCTCTT- i chlSab2.chr25 I 2 C 0 s calJac3.chr19 14390899 34 - 49578535 -----GGGAA-AAAGTAG-AAATTCAAATTCTGCATTCTCT-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178886623 38 + 195471971 ---AAAAGCA-AACCCAGAAAAATCAAGCTTCATATCCTTTG- i mm10.chr1 C 0 C 0 s canFam3.chr7 36471110 35 + 80974532 ------AACACAAACTAG-AAAACCAAACCCCACATTCCTTA- i canFam3.chr7 C 0 C 0 e rheMac3.chr1 17064299 38 - 229590362 I a score=3557030.000000 s hg38.chr1_KI270759v1_alt 343978 1020 + 425601 CCTTCCCCCACCCCCCCCAAAAAACACAGA-----CACCCCACTACCTCTTCATTTGTCTCCCCAGACAACTCTGTACTTGGAACCTGCATTACTTGTGCTTGCTCCTGGGAAATTCGCTGCAATGTGCACAGAGGGGCTGTAGCCTGTCTTCATTCCTCTTCATCATCTTACCAGGCTATTTGTCATGTGAGC-AAGCTGGAAAGTGAGTTTGGATTCATTACCCATCCCAGGCATTCCCACAGGCACCCTCCATGTGCGCTGAATGCTTCTGACTTTGCAAATGATATTGCCCTTGAAGATG-CAGG---AGGCGTGGAGCAGGTTTCCAACCTCAGCCATTAcacagcacaggcacattacatggcacaggcTTGCC--GGCCAGTCCAGGCGCCATAA----ATCAGTTCTCAACGGTGGCACCATTCAGAAAAGCAT------GCAGGGAAGG-------------CAGGGAGACCACCAAGGGCTCCAA-CCCC-TCGTCAGTTCTGCACTGACAGGCTGCACAAATTACTC---TCTAATTTTTGAGAGCCTCCACCTCCAGGGAACCCTGCC-CTCATTC-GATCATTTTGACAGTGCATTTGCAAATTTTC-------TT----TATTCGGTACATTCATTTGCTGTT--CCTTACTGC-TCTTGGGCACCAAGGTGCTAGGAATCTTCCCATTTAATGGAT----------AAGAAAAAATAGGCAGAAGCGTTGAAATGACTTCTCAGGCCAAAACCCAGTGTT----GCACATCCCACAGGAGTTGGCCCCCAGAAGAACCGCCACAAGGATCTGTCAGGGTGAACTGAGCTTCGGCTAACGGG-TGTTATGTCCCAGCTCATCTGAAGGACCACAGCTTTTCGAGA----CT---CAGATTCTCACCATGACCCAATTATCTC------------AAAATAGAATTTCTGGT-TCTCTTAGATGTTGC-TTTGT----A------GAGGGCACAGGCCCTTAGAAAGCACACACCTGTCATGCAGGCGTCCTTCAAGCCCTGAAGCATTTACCTTCATTGATGACTGCTGCTCCATATGGAGAAAGAATTCCTTTAATGGGTCATATGA s panTro4.chr1 225099693 1018 + 228333871 CCTTCCCCCACCCCCCC-AAAAAACACAGA-----CACCCCACTACCTCTTCATTTGTCTCCCCAGACAACTCTGTACTTGGAACCCGCGTTACTTGTGCTTGCTCCTGGGAAATTCGCTGGAAAGTGCACAGAGGGGCTGTAGCCTGTCTTCATTCCTCATCATCATCTTACCAGGCTATTTGTCATGTGAGC-AAGCTGGAAAGTGAGTTTGGATTCATTACCCATCCCAGGCATTCCCACAGGCACCCTCCATGTGCGCTGAATGCTTCTGACTTTGCAAATGATATTGCCCTTGAAGATG-CAGG---AGGCGTGGAGCAGGTTTCCGATCTCAGCCATTACACGGCACAGGCACATTACATGGCACGGGCTTGCC--GGCCAGTCCAGGTGCCATAA----ATCAGTTCTAAACGGTGGCACCATTCAGAAAAGCAT------GCAGGGAAGG-------------CAGGGAGACCACCAAGGGCTCCAA-CCCC-TCGTCAGTTCTGCACTGACAGGCTGCACAAATTACTC---TCTAATTTTTGAGAGCCTCCACCTCCAGGGAACCCTGCC-CTCGTTC-GATCATTTTGACAGTGCATTTGCAAATTTTC-------TT----TATCCGGTACATTCATTTGCTGTT--CCTTACTGC-TCTTGGGCACCAAGGTGCTAGGAATCTTCCCATTTAATGGAT----------AAGAAAAAATAGGCAGAAGCGTTGAAATGACTTCTCAGGCCAAAACCCAGTGTT----GCACATCCCACAGGAGTTGGCCCC-AGGAGAACGGCCACAAGGATCTGTCAGGGTGAACTGAGCTTCGGCTAACGGG-TGTTATGTCCCAGCTCATCTGAAGGACCACAGCCTTTCGAGA----CT---CAGATTCTAACCACGACCCGATTATCTC------------AAAATAGAATTTCTGGT-TCTCTTAGATGTTGC-TTTGC----A------AAGGGCACAGGCCCTTAGGAAGCACACACCTGTCATGCAGGCGTCCTTCAAGCCCTGAAGCATTTACCGTCATTGATGACTGCTGCTCCATATGGAGAAAGAATTTCCTTAATGGGTCATACGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226473626 1016 - 229942017 CCTTCCCCCACCCCCCC-AAAAAACACAGA-----CACCCCACTACCTCTTCATTTGTCTCCCCAGACAACTCTGTGCTTGGAACCTGTGTTACTTGTGCTTGCTCCTGGGAAATTCACTGGAATGTGCACAGAGGGGCTGTAGCCTGTCTTCATTCCTCTTCATCATTTTACCAGGCTATTTGTCATGTGAGC-AAGCTGGAAAGTGAGTTTGGAATCATTACCCATCCCAGGCATTCCCACAGGCACCCTCCATGTGCGCTGAATGGTTCTGACTTTGCAAATGATATTGCCCTTGAAGATG-CAGG---AGGCATGGAGCAGGTTTCCGACCTCAGCCATTACACGGCACAGGCACATTACATGGCACAGGCTTGCC--GGCCAGTCGAGGCCCCATAA----ATCAGTCCTAAACGGTGGCACCATTCAGAAAAGCAT------GCAGGGAAGG-------------CAGGGAGACCACCAAGGGCTCCAA-CCCC-TCGTCAGTTCTGCGCTGACAGGCTGCACAAATTACTC---TCTAATTTTTGAGAGCCTCCACGTCCAGGGAACCCTGCC-CTCATTC-CAGCATTTTGACAGTGCATTTGCAAATTTTC-------TT----GATTCGGTGCCTTCATTTGCTGTT--CCTTAGTGC-TCTTGGGCACCAAGGTGCCAGGAATCTTCCCATTTAATGGAT----------AAGAAAAAATAGGCAGAAGCGTTGAAATGACTTCTCAGGCCAAAACCCAGTGTC----GCACATCCCACGGGAGTTGGCCCCCAGAAGAACCGCCACAAGGATCTGTCAAGGTGAACTGAGCTTCAACTAACGGG-TGTTATGTCCCAGCTCATCTGAAGGACCACAGCTTTTTGAGA----CT---CAGATTCTAACCACGACCCAATTATCTC------------AAAACAGAATTTCTGGT-TCTCTTAGATGTTAC--TTGT----A------AACGGCACAGGCCCTTAGGAAG--CGCACCTGTCACGCAGGCATCCTTCAAGCCCTGAAGCATTTACCTTCATTGATGACTGCTACTTCATATGGAGAAAGAATTCCTTTAATGGATCATATGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140359125 1017 - 143122389 CCTTCCCCCACCCCCC--AAAAAACACAGA-----CACCCCACTACCTCTTCATTTGTCTCCCCAGGCAACTCTGTGCTTGGAACCTGCATTACTCGTGCTTGCT-CTGGGAAATTCAGTGGAATGTGCA------GGCTGTAGCCTGTCTTCATTCCTCTTCATCATTTTACCAGGCTATTTGTCATGTGAGC-AAGCTGGAAAGTGAGTTTGGATTCATTACCCATCCCAGGCGTTCCCACAGGCACCCTGCATGTGCGCTGAATGGTTCTGACTTTGCAAATGATACTGCCCTTGAAGATG-CAGG---AGGTGTGGAGTAGGTTTCCGACCTCAGCCATTacatggcacaggcacattacagggcacaggcttgcc--ggccagtccaggcacCATAA----ATCAGTCCTAAACGGTGGCACCATTCAGAAAAGCAT------GCAGGGAAGG-------------CAGGGAGACCACCAAGGGCTCCAA-CCCC-TCGTCAGTCCTGCACTGACAGGCTGCACAAATTACTC---TCTAATTTTTGAGAGCCTCCACATCCAGGGAACCCTGCC-CTCATTC-GAGCATTTTGACAGTGCATTTGCAAATTTTC-------TT----TATTCGGTACATTCATTTGCTGTT--CCTTACTGC-TCTTGGGCACCAAGGTGCTAGGAATCTTCCCATTTAATGGAT----------AAGAAAAAATAGGCAGAAGCGTTGAAATGACTTCTCAGGCCAAAACCCAGGGTTGCAGGCACATCCCACAGGAGCTGGCCCCCGGAAGAACCGCCACAAGGATCTGTCAGGGTGAACTGAGCTTCGGCTGACGGG-TGTTATGTCCCAGCTCATCTGAAGGACCACTGCCTTTCGAGA----CT---CAGGTTCTAACCACGACCCAATTCTCTC------------AAAATAGAATTTCTGGT-TCTCTTAGATGTTGC-CTTGTAAAGA------AAGGTCACAGGCCCTTAAGAAG--CACACCAGTCACGCAGGCGTCCTTCAAGCCCTGAAGCATTTACCTTCATTGATGGCTGCTACTCCATATGGAGAAAGAATTCCTTTAATAGGTCATATGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17064337 1019 - 229590362 CCTTCCCCCACCCCC-----AAAACACAGA-----CACCCCACTACCTCTCCATTTGTCTCCCCAGACAACTCTGTGCTTGGAACCTGCGTTACTTGTGCTTGCTCCTGGGAAATTCACTGGAATGTGCACAGAGGGGCTGTAGCCTGTCTTCATTCCTCTTCATCATTTTACCAGACTATTTGTCATGTGAGCAAAGCCGGAAAGTGAGTTTGGATTCATTACCCATCCCAGGCATTCCCACAGGCACCCTCCATGTGCGCTGAATGGGTCTGACTTTGCAAATGATATTGCCCTTGAAGATG-CAAG---AGAGGTGGAGCAGGTTTCCAACCTCAGCCATTACATGGCACAGGCACATTGCACGGCACAGGCTTGCC--GGCCAGTCCAGGTGACGTAA----GTCGGCCCTAAACAGTGGCACCATTCAGAAAAGCAT------GCAGGAAAGG-------------CAGGGAGACCACCAAGGGCTCCAG-CCCC-TCATCAGTTCTGCACTGACAGGCTGCACAAATTACGC---TCTAATTTTTGAGAGCCTCCACATCTAGGGAACCCTGCC-CTCGTTT-GAGCATTTTGACAGTGCATTTGCAAATCTTC-------TT----TATTCGGTACAGTCATTTGCTGTT--CCTTACCAC-TCTTGGGCACCAAGGTGCTAGGAGTCTTCCCATTTAATGGAT----------AAGAAAAAATAGGCAGAAGCATTGAAATGACTTCCCAGGCCAAAACCCAGTGTTTCAGGCACATCCCACAGGAGTTGGCCCCCAGAAGAACTGCCACAAGGATCTGTCAGGGTGAACTGAGCTTCGGCTAAAGGG-TGTTACGTCCCAGCTCATCTGAAGGACCGCAGCCTTTCGAGA----CT---CGGATTCTAACCGCAACCCACTTCTCTCA-----------AAAATAGAATTTCTGGT-TCTCTTAGATGTTGC-CTTGC----A------AAGGGCATGGACTCTTAGAAAC--CACACCTTTCACACAGGGCTCCTGCAAGCCCTGAAGCATTTACCTTCATTTATAACTGCTACTCCATATGGAGGAAGAATTCCTTTAATGGGTCATATGG i rheMac3.chr1 I 38 C 0 s macFas5.chr1 223828554 1019 - 227556264 CCTTCCCCTACCCCC-----AAAACACAGA-----CACCCCACTACCTCTCCATTTGTCTCCCCAGACAACTCTGTGCTTGGAACCTGCGTTACTTGTGCTTGCTCCTGGGAAATTCACTGGAATGTGCACAGAGGGGCTGTAGCCTGTCTTCATTCCTCTTCATCATTTTACCAGGCTATTTGTCATGTGAGCAAAGCCGGAAAGTGAGTTTGGATTCATTACCCATCCCAGGCATTCCCACAGGCACCCTCCATGTGCGCTGAATGGGTCTGACTTTGCAAATGATATTGCCCTTGAAGATG-CAAG---AGAGGTGGAGCAGGTTTCCAACCTCAGCCATTACATGGCACAGGCACATTGCACGGCACAGGCTTGCC--GGCCAGTCCAGGTGACGTAA----GTCGGCCCTAAACAGTGGCACCATTCAGAAAAGCAT------GCAGGAAAGG-------------CAGGGAGACCACCAAGGGCTCCAG-CCCC-TCATCAGTTCTGCACTGACAGGCTGCACAAATTATGC---TCTAATTTTTGAGAGCCTCCACATCTAGGGAACCCTGCC-CTCGTTT-GAGCATTTTGACAGTGCATTTGCAAATCTTC-------TT----TATTCGGTACAGTCATTTGCTGTT--CCTTACCAC-TCTTGGGCACCAAGGTGCTAGGAGTCTTCCCATTTAATGGAT----------AAGAAAAAATAGGCAGAAGCATTGAAATGACTTCTCAGGCCAAAACCCAGTGTTTCAGGCACATCCCACAGGAGTTGGCCCCCAGAAGAACTGCCACAAGGATCTGTCAGGGTGAACTGAGCTTCGGCTAAAGGG-TGTTACGTCCCAGCTCATCTGAAGGACCGCAGCCTTTCGAGA----CT---CGGATTCTAACCGCAACCCACTTCTCTCA-----------AAAATAGAATTTCTGGT-TCTCTTAGATGTTGC-CTTGC----A------AAGGGCATGGACTCTTAGAAAC--CACACCTTTCACACAGGGCTCCTGCAAGCCCTGAAGCATTTACCTTCATTTATAACTGCTACTCCATATGGAGGAAGAATTCCTTTAATGGGTCATATGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16878702 1018 - 220367699 ccttcccctacCCCC-----AAAACACAGA-----CACCCCACTACCTCTCCATTTGTCTCCCCAGACACCTCTGTGCTTGGAACCTGCGTTACTCGTGCTTGCT-CTGGGAAATTCACTGGAATGTGCATAGAGGGGCTGTAGCCTGTCTTCATTCCTCTTCATCATTTTACCAGGCTATTTGTCATGTGAGCAAAGCCGGAAAGTGAGTTTGGATTCATTACCCATCCCAGGCATTCCCACAGGCACCCTCCATGTGCGCTGAATGGGTCTGACTTTGCAAATGATATTGCCCTTGAAGATG-CAAG---AGACGTGGAGCAGGTTTCCAACCTCAGCCATTACATGGCACAGGCACATTGCACGGCACAGGCTTGCT--GGCCAGTCCAGGTGCCATAA----GTCGGCCCTAAACAGTGGCACCATTCAGAAAAGCAT------GCAGGAAAGG-------------CAGGGAGACCACCAAGGGATCCAG-CCCC-TCAACAGTTCTGCACTGACAGGCTGCACAAATTACGC---TTTAATTTTTGAGAGCCTCCACATCTAGGGAACCCTGCC-CTCGTTT-GAGCATTTTGACAGTGCATTTGCAAATCTTC-------TT----TATTCGGTACAGTCATTTGCTGTT--CCTTACCAC-TCTTGGGCACCAAGGTGCTAGGAGTCTTCCCATTTAATGGAT----------AAGAAAAAATAGGCAGAAGCATTGAAATGACTTCTCAGGCCAAAACCCAGTGTTTCAGGCACATCCCGCAGGAGTTGGCCCCCAGAAGAATTGCCACAAGGATCTGTCGGGGTGAACTGAGCTTCGGCTAAAGGG-TGTTATGTCCCAGCTCATCTGAAGGACCGCAGCCTTTCGAGA----CT---CGGATTCTAACCGCGACCCACTTCTCTCA-----------AAAATAGAATTTCTGGT-TCTCTTAGATGTTGC-CTTGC----A------AAGGGCACGGACTCTTAGAAAC--CACACCTTTCACGCAGGGCTCCTGCAAGCCCTGGAGCATTTACCTTCATTTATAACTGCTCCTCCATATGGAGGAAGAATTCCTTTAATGGGTCATATGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82680106 1016 + 85787240 CCTTCCCCCACCCCC-----AAAACACAGA-----CACCCCACTACCTCTTCATTTGTCTCCCCAGACGACTCTGTGCTTGGAACCTGCGTTACTCGTGCTTGCT-CTGGGAAATTCACTGGAATGTGCGCAGAGGGGCTGTAGCCTGTCTTCATTCCTCTTCACCATTTTACCAGGCTATTTGTCATGTGAGCAAAGCCGGAAAGTGAGTTTGGATTCATTACCCATCCCAGGCATTCCCACAGGCACCCTCCACGTGCGCTGAATGGGTCTGACTTTGCAAATGATATTGCCCTTGAAGATG-CAAG---AGATGTGGAGCAGGTTTCCAACCTCAGCCATTACATGGCACAGGCACATGGCACGGCACAGGCTTGCC--GGCCAGTCCAGGTGCTGTAA----GTCGGCCCTAAACAGTGGCTCCATTCAGAAAAGCAT------GCAGGAAAGG-------------CAGGGAGACCACCAAGGGCTCCAG-CCCC-TCATCAGTTCTGCACTGACAGGCTGCACAAATTACGC---TCTAATTTTTGAGAGCCTCCACATCTAGGGAACCCTGCC-CTCGTTT-GAGCATTTTGACAGTGCATTTGCGAATCTTC-------TT----TATTCGGTACAGTCATTTGCTGTT--CCTTACCAC-TCTTGGGCACCAAGGTGCTAGGAGTCTTCCCATTTAATGGAT----------AAGAAAAAATAGGCAGAAGCATTGAAATGACTTCTCAGGCCAAAACCCAGTGTTTCAGGCACACCCCACAGGAGTTGGCCCCCAGAAGAACTGCCACAGGGATCTGTCAGGGTGAACTGAGCTTCGGCTAAAGGG-TGTTACGTCCCAGCTCATCTGAAGGACCGCAGCCTTTCGAGA----CT---CAGATTCTAACCGCGACCCACTTCTCTCA-----------AAAATAGAATTTCTGGT-TCTCTTAGATGTTGC-CTTGC----A------AAGGGCACGGACTCTTGGAAAC--CACACCTTTCACGCAGGGCTCCTGCAAGCCCTGAAGCATGTACCTTCATTTATAACTGCTACTCCATATGGAGAAAGAATTC--TTAATGGGTCATATGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14390933 961 - 49578535 CCCGTCCCCGCCCCTCC---AGAACACAGA-----CACCCCACTACCTCTTCATCTGTCTTCCCAGGCG--TCTGTGCTTGGAAGCTGCGTGACACATGCTTGCTTCTGGGAAATTCGCTGGGA--TGCACAGAGGGGCTGTAGCCTGTGCTCATTCCTCTCCATCATTGTACCAGACTATTTGTCACGTGAGC-AAGCTGGAAAGTGAATCTGCATTCATTACCCATCCCAGGCTCTCCCACAGGCCTCCTCCATGTGCGCCGATTGGTTCTGACTTTGCAAATGATATTGCCCTTGAAGGTG-CAAG---AGGCGCAGAGCACATTCCCGACCTCAGCCATGA------------------TGCGGCGCAGGCTTGCC--GGCCAGTCCAGGCGCCGTCA----ATCAATCCTAAGCAGTGGCAGCATTCAGGAAAGCAT------GCAGGGAGGG-------------CAGGGAGACCGCCAAGGGCTCCATCCCCC-TCGTCAGTTCTGCGCTGACAGGCTGCAGAGATTCCTT---TCTAAGTTTTGGGAGCTTCCACGTCCAGGGAA-CCTGCC-CTCATCC-GAGCATTTCGATGGTGTCTTTGCACGTTTCTTTCACGATT----CATTTGTTACGGTCATTTG-TATT--CCCTTCCGC-CCTC-AGCAGCAAGGTGGGAGGAGTCCTCCTATTTAATGGAT------------------------------------GTGACTTCTCAGGCC-GAGCCCAGTGTCCCGGGCACATACCACCGGAGCAGGCCCCCAGAATGGCCACCCTGAGGATCTGTCAAGGTGAACTGGGCTCGGGCTAAAGGG-TATTATGTCCCAGCTCATCTGAAGGACCACAGGCTTTCTAGA----CA---CAAATTCTAACCAGGACCCAGTTCTCTC------------AAAATAGAATTTCTGGT-TCTCATCAATGTGGC-CTCGC----C------AAGGGCACAGAC-CTTAGGAGG--TACCCCTTTCACGCAGGGCTCCT------------GCCTTTACCTTCATTTATGG-GGTTACTCCTCATTGAGAAAGAATCCCCTTAATGGGTCATAGGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178886661 1052 + 195471971 CCCTCCCCCATCTCTCT---AAAACACAAGACTCCCTCCCCCCTCGCTCTTCATCTGTCACCCTAGACAAC----TGCTTCAAAACAGCATTACTCGTGCTTGCTTCTGGGAAATTAACTAGAATGTGCTCAGAGGGGATATAGCCTGTCTCCATTTCTCTTCATCATTGTACCGGACCATTTGTCATGTGAGC-AAGCCTGAAAGTGAGTTGGGATTCATTACCCATCCTGGGTGCTCCCACAAGCACCCTCAATGTGCTCTGAATGGTTCTGACTCTGCAGATGATATTGCCTCTGCAGATGACAGGCGCAGGCGTGGAGTCAGTTCCCCACCTCAGCCATTATGCAGTACAAGC-------------------TGCCTTGGCCAATCCCAATACCATTCATTTATCAGTCCTAAATAGTGACACCATTCAGAAAAGCATGGCTgggcgggggggggggggggggggcACAAGGAGATCAGCAAGGACACCAGCCCCC-TAGTCAGCTCGGCAATGACAGAAAGCACAAATTGCTCTTTTCTTACTTCGGGGAGTCT-CACACCCAGGGAAATCTGTC-CTTGTTCTGAGATTTCTGACAGCACATTTGCAAATTTTCTCCAAGGCT----CATTCGTTATAGTTGTCTGCTATT--TCTCACCACTTCTTGCACAGCGAGGAGCTAGGAATCTCCACAACTGACAGAATGCGGGGGGGTGGGGGGGGTGAGCAGAGGCATTAGCAGGAATTCTCATGTCACAAACCAGGGTTCTAGGGGTTCACTTTGGGAGCTGGTCCCC-GAGGAGCCACTGCAAGGATCCGTCAGGGTGAACTTGGCTTCAGCTAAAGTGCTCTGATATCCCAG--AATTCTGAGGATCACAGACTTTCTAGAGACCCT---GGAATTCTAACTGCAGCTAAGTTCCCT-------------ACAAGGGAA--CCTGGTCCCTTTTAGATGTTGT-CATGT----G------ATGGGAACAAGCCCTGAGAAAG--CATGTTCTTCGCACACTGATCCCTCAAGCCCCAAAGCTCATAAGTTCATTTATAACTGTCACTGCATTTGGAGAAACCATTACTTTAATAAGCCACACAA i mm10.chr1 C 0 I 580 s canFam3.chr7 36471145 1001 + 80974532 CCCTCCCCCACGGCTCC-AAAAGCCACAGA------ACCCCACTACCCCTTCATCTGTCACCCTAGACAACTCTGCGCTTGGAACCTGCATTACTTGTGTTTGCTTCTGGGAAATTAACTCAAATGTGCACAGAGGGGATATCGCCTGTCCTCATTTCTCTTCATCATCCTATCAGACTATTTGTCATGTGAGC-AAG-TAGAACGTGTGTTTGGAGTCATTACCCATCCCAGGCACTCCCGTGGGTACCTTAGGGGTGCCCTGAGTGGTTTTGACTTTGCAAATGAGTTTGCCTTTGTAGATG-TCAG-GCAGGCGCAGGATGGGCTCCCGACCCTAGCAGCTCCGTGGTG-------------------AGGCTTGCT--GGCCCATTCCAGTGCTATAA----ATCAGTCCTACATGGTGGTGCCATTCAGAAAAGCAT------GCAGGGAAGG-------------ACAGGAGACCACCAGCAGCTCCAG-CCCCACCTTCAGTTCTGCACTAGCAGGCTGCACATGTTCCTC---TCAAACTTTGGGCAATGT-CTTGTCTAGGGAAATCTGTTGCAGGCCT-GACCATCTTGACAGTGTGTTTGCAAATTCCT-------TCCCAGTGTTCATTCCAGCCATTTGCTGTTACCCCTACCACTTCTTAGGCACCAGCATAATAGGTGTCTTCCTTTTTGATAGAT----------GAGAAAAGATAGGGGGAAGCATGGGAATGAATTCCTGTGCCAGAAACCAGTATTGCAGCCCTTGGCCTCAGAAG--GGCTCTCACAAGG--------AAGGATCTGTCCATGTGAACTCAGCTTTGGCCCAAGTGCTATTCTATCCCAGCTGATCTTCAGGACTGTAGTCTTTCTAGA----GTGTGGAAACTCTAACCACCACCCAG-TGTCTAAGCTTGTAGGTGAAGGTAGATGCTTTAGT-----ATGGAGGGTGTGCCTGT----ATGGAGCAGGGGTATAGACCCTGAGGAGG--CATACCCTCCATAC-----------------TGAAGTGTCTACCTTCATCCACAACTGTCACTCCATTTGGAGAAAGAATTGCTTTAATAGGCCAAGCAA i canFam3.chr7 C 0 C 0 a score=3321.000000 s hg38.chr1_KI270759v1_alt 344998 1 + 425601 C s panTro4.chr1 225100711 1 + 228333871 C i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226474642 1 - 229942017 C i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140360142 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17065356 1 - 229590362 C i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223829573 1 - 227556264 C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16879720 1 - 220367699 C i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82681122 1 + 85787240 C i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14391894 1 - 49578535 C i calJac3.chr19 C 0 C 0 s canFam3.chr7 36472146 1 + 80974532 T i canFam3.chr7 C 0 C 0 e mm10.chr1 178887713 580 + 195471971 I a score=1010468.000000 s hg38.chr1_KI270759v1_alt 344999 332 + 425601 CTGTTTGCTTA-TTTGCCAACACAGTGTTTCTAAACACTCTGTTTCTAAACAACAG----CTAGTTGCTAATGTCTTGGCTGCCCTTTAACAAGAGTTCATGGAAAGTCCTTCTGTGGCCCTCTCATGTCATGCCTGTCTGAGATGCT-TCTCCCAGTCATCTTGAAAAATGGTGCTACATAACCATCCTGTCGTGGAAATGATG-----------------CCCGGCACCTCCCTCTCACGGGTTTGGTCTATGGTTCAGACCCAGACCTAATCCTTGTTTGTTGAGATCAGTCACTGAGACACTTT-GGGTCTCAGCAGCTGTGCTGAGCTCGCCTCCTCCTCTCTCT----------------------GGTAGA--------------------- s panTro4.chr1 225100712 330 + 228333871 CTGTTTGCTTA-TTTGCCAACACGGTGTTTCTAAACACT--GTTTCTAAACAACAG----CTAGTTGCTAATGTCTTGGCTGCCCTTTAACAAGAGTTCATGGAAAGTCCTTCTGTGGCCCTCTCATGTCATGCCTGTCTGAGATGCT-TCTCCCAGTCATCTTGAAAAATGGTGCTACATAACGATCCCGTCGTGGAAACGATG-----------------CCCGGTACCTCCCTCTCACGGGTTTGGTCTGTGGTTCAGACCCAGACCTAATCCTTGTTTGTTGAGATCAGTCACTGAGACACTTT-GGGTCTCAGCAGCTGTGCTGAGCTCGCCTCCTCCTCTCTCT----------------------GGTAGA--------------------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226474643 314 - 229942017 CTGTTTGCTTA-TTTGCCAACACGGT---------------GTTTCTAAACAACAG----CTAGTTGCTAATGTCTTGGCTGCCCTTTAACAAGAGCTCATGGAAAGTCCTTCTGTGGTCCTTTCATGTCGTGCCTGTCTGAGATGCT-TCTCCCAGTCATCTTGAAAAATGGTGCTACATAACCATCCCATCATGGAAATGATG-----------------CCTGGCACCTCCCTCTTACAGGTTTGGTCTGTGGTTCAGACCCAGACCTAATCC----TTGTTGAGATCAGTCACTGAGACACTTTGGGGTCTCAGCAGCTGTGCTGAGCTCGCCTCCTCCTCTCTCT----------------------GGTGGA--------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140360143 327 - 143122389 CTGTTTGCTTA-TTTGTCAACATGGTGTTTTGAAACACT--GTTTCTAAACAACAG----CTAGTTGCTAATGTCTTGGCTGCCCTTTAACAAGAGCTCATGGAAAGTCCTTCTGTGGCCCTCTCATGCTGTGCCTGTCTGAGATGCG-TCTCCCAGTCCTCTTGAAAAATGGTGCCACATAACCATCCCACCGTGGAAATGATG-----------------CCCGGCACCTCCCGCTTACGGGTTGGGTCTATGGTTCAGACCCAGACCTAATCCTTGTTTGTGGAGATCAGTCACGGAGACACTTT-GGGTCTCAGCAGCAGTGCTGGGCTCA---CCTCCTCTCTGT----------------------GGGAGA--------------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17065357 342 - 229590362 CTGTTTGCTTA-TTTGCCAACTCGGTGTTTCTAAACACT--GTTTCTAAACAACAG----CTAGTTGCTAATGTCTTGGCTGCCCTTTAACAAGAACTCAT-GAAAGTCATTCTGTGGCCCTCTCCTGTTGTGC----CTGAGACGCT-TCTCCCAGTCATCTTGAAAAATGGTGCTACACAGCCATCCCGTCGTGGAAATGATGGCTACATAGCCATCCGTCGCGGCACCTCCCTCTTACGGGTTTGGTCTATGGTTCAGATCCAGACCTAATCCTTGTTTGTTGAGATCAGTCACTGAGGCACTTT-GGGTCTCAGCAGCTGTGCTGAGCTCGCCTCCTCCTCTCTGT----------------------GGTGGA--------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223829574 342 - 227556264 CTGTTTGCTTA-TTTGCCAACTCGGTGTTTCTAAACACT--GTTTCTAAACAACAG----CTAGTTGCTAATGTCTTGGCTGCCCTTTAACAAGAACTCAT-GAAAGTCATTCTGTGGCCCTCTCCTGTTGTGC----CTGAGACGCT-TCTCCCAGTCATCTTGAAAAATGGTGCTACACAGCCATCCCGTCGTGGAAATGATGGCTACATAGCCATCCGTCGCGGCACCTCCCTCTTACGGGTTTGGTCTATGGTTCAGATCCAGACCTAATCCTTGTTTGTTGAGATCAGTCACTGAGGCACTTT-GGGTCTCAGCAGCTGTGCTGAGCTTGCCTCCTCCTCTCTGT----------------------GGTGGA--------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16879721 346 - 220367699 CTGTTTGCTTA-TTTGCCAACTCGGTGTTTCTAAACATT--GTTTCTAAACAACAG----CTAGTTGCTAATGTCTTGGCTGCTCTTTAACAAGAACTCAT-GAAAGTCATTCTGTGGCCCTCTCATGTTGTGCCTGTCTGAGATGCT-TCTCCCAGTCATCTTGAAAAATGGTGCTACATAGCCATCCTGTCGTGGAAATGATGGCTACATAGCCATCCATCGCGGCAGCTACCCCTTACGGGTTTGGTCTATGGTTCAGATCCAGACCTAATCCTTGTTTGTTGAGATCAGTCACTGAGGCACTTT-GGGTCTCAGCAGCTGTGCTGAGCTCGCCTCCTCCTCTCTGT----------------------GGTGGA--------------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82681123 346 + 85787240 CTGTTTGCTTA-TTTGCCAACTCGGTGTTTCTAAACACT--GTTTCTAAACAACAG----CCAGTTGCTGATGTCTTGGCTGCCCTTTAACAAGAACTCAT-GGAAGCCATTCTGTGGCCCTCTCATGTTGTGCCTGTCTGAGATGCT-TCTCCCAGTCATCTTGAAAAATGGTGCCACATAGCCATCCCGTCGTGGAAATGATGGCTACATAGCCATCCGTCGCGGTACCTCCCTCTTACGGGTTTGGTCTATGGTTCAGATCCAGACCTAATCCTTGTTTGTTGAGATCAGTCACTGAGGCGCTTT-GGGTCTCAGCAGCTGTGCTGAGCTCGCCTCCTCCTTTCTGT----------------------GATGGA--------------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14391895 337 - 49578535 CTCTTTGCTTA-TTTGCCAACAGGGT---------------GTTTCTAAACAGCAG----CCAGTTGCTAATGTCTTGGCTGC-CTTTAACAAGAGCTCAGGGAAGGTCATCCTGGGACCCTCTCATGTTGTGTCTGTCTGAGATGCT-TCTCCCAGTCATCTTGAAAAATGGTCCT-CCTAATCATCCCACGGTGGACGTGATG-----------------CCTGGCCCCTCCCTCTTCCAGGCTCAGTCTGTGCTTCAGACCCAGACATAATCCCTGTTTGCTGAGATCAGTCATTGAGTCAGGCT-GGGTTTCAGCAGCTATGCCCAGCTCACCGCCTCCTCTCTGTGGTGCAGTCAAGGGAGCAGGCAGGTGGA--------------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178888293 301 + 195471971 CTATGTGCTCATTTTGCCAGCAGGGTGTTT--GCACTCT--GCTTCCAAACCACAGATATTTATTTGCT-ATGTCTGGACGCCCATTTCGTAAGG--TCGTGGAATATCACCCTGTATCACCCTAATGTCGTGTCTGTTTATGGTGCT-GTTCTCTGCCAGCTTGGGACATGGTGCCGCATAGCCA-CCTGTGATGGAAGCTGTG-----------------------AGCTCCTTCT---------GTGCTGTGG-------CCGGAGC--ACCCCCATTTACTCATGGTCATCACTAGCAAGTGCT-GGGCACAGACACCTGTGCTTGTTTCACTTTC----CTCTCT----------------------GGTGGA--------------------- i mm10.chr1 I 580 I 503 s canFam3.chr7 36472147 328 + 80974532 CTGTTTGTTTA-TTTGTCAACAAGATGCTT----ATACT--GTCTCCAAACACCAG----ATACTTTATAATGTCTTGGTTTCCATTTAATAAGAGGTTGTGGAAGATCATTCTGCGA--CTCTCACGTTGTAC----CTGAGACCCTCTTTCTGAGTCAACTTGAGACATGGCTCTGCATTACAATCCCATGAAGGAAGTGATG-----------------CTCGATGCCTTTCTTCAATGAGCTTGGTCTGTGGTTCCAACAAAGACTTACTCCTTGTTTATTTGCACCAGTTACTGA--CACGTC-AGAGATCATCAAAC------------CTTCCCCCTCGCTGT----------------------GGTGAATCTGCTGGCAGTGGTAGGGGA i canFam3.chr7 C 0 C 0 a score=37946.000000 s hg38.chr1_KI270759v1_alt 345331 33 + 425601 GCCTGAGGCAATCTGTGAT-CCAAGCTGCAGGCC s panTro4.chr1 225101042 33 + 228333871 GCCTGAGGCAATCTGTGAT-CCAAGCTGCAGGCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226474957 34 - 229942017 GCCTGAGGCAATCTGTGATCCCAAGCTGCAGGCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140360470 34 - 143122389 GCCTGAGGCAGTCTATGATCCCAAGCTGCAGGCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17065699 17 - 229590362 TCC-----------------CGAAGCTGCAGGCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223829916 17 - 227556264 TCC-----------------CGAAGCTGCAGGCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16880067 17 - 220367699 TCC-----------------CGAAGCTGCAGGCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82681469 17 + 85787240 TCC-----------------CAAAGCTGCAGGCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14392232 33 - 49578535 GCCTGAGGTA-TTTGTGATCCCAAGCTGCCGTCC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36472475 34 + 80974532 GCCTGAGGCAGGCTGTGATCGTTGGCTTGAGACT i canFam3.chr7 C 0 C 0 e mm10.chr1 178888594 503 + 195471971 I a score=474230.000000 s hg38.chr1_KI270759v1_alt 345364 143 + 425601 ACGAGCAAACACCGCAGGCAACATCCACTTCCAGAAGGCTGTGTTCCACAAAAGCGATGAGGACACCCATCCTCAGGGGCTATAATGGGAACTCTTTTCCTCCTAAGGCCCTAGTGAGG-AGTCAGGAACCAAGGTCATCTTTA s panTro4.chr1 225101075 143 + 228333871 ACGAGCAAACACCGCAGGCAGCATCCACTTCCAGAAGGCTGTGTTCCACAAAAGCGATGAGGACACCCATGCTCAGGGGCTATAATGGGAACTCTTTTCCTCCTAAGGCCCTAGTGAGG-AGTCAGGAACCAAGGTCATCTTTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226474991 143 - 229942017 ACGAGCAAACACCACAGGCAGCATCCACTTCCAGAAGCCTGTGTTCCACAAAAGCGATGAGGACGCCTATCCTCAGGGGCTATAATGGGAACTCTTTTCCTCCTAAGGCCCTAGTGAGG-AGTCAGGAACCAAGGTCATCTTTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140360504 142 - 143122389 ACAAGCAAAC-CCGCAGGCAGCATCCACTTCCAGAAGCCTGTGTTCCACAAAAGCGACGAGGACGCCCATCCTCAGGGGCTATCATGGAAACACTTTTCCTCCTAAGGCCGTAGTGAGG-AGTCAGGAACCAAGGTCATCTTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17065716 141 - 229590362 ACAAGCAAACACCGCAGGCAGCATCCACTTCCAGAAGCCTGTGTTCCAC-AAAGCGACGAGGACGCCCACCCTCAGGGGCTATAATGGGAACTCTTTTCCTCCTAAGGCCCCAGTGAGG-AGTCAGGAACCAA-GTCATCTTGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223829933 141 - 227556264 ACAAGCAAACACCGCAGGCAGCATCCACTTCCAGAAGCCTGTGTTCCAC-AAAGCGACGAGGACGCCCACCCTCAGGGGCTATAATGGGAACTCTTTTCCTCCTAAGGCCCCAGTGAGG-AGCCAGGAACCAA-GTCATCTTGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16880084 143 - 220367699 ACAAGCAAACACCGCAGGCAGCATCCACTTCCAGAAGCCCGTGTTCCACAAAAGCGATGAGGACGCCCACCCTCAGGAACTATAAAGGGAACTCTTTTCCTCCTAAGGCTCCAGTGAGG-AGTCAGGAACCAAGGTCATCTTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82681486 143 + 85787240 ACAAGCAAACACCGCAGGCAGCATCGACTTCCAGAAGCCTGTGTTCCACAAAAGCGATGAGGACGCCCACCCTCAGGGGCTATAAAGGGAACTCTTTTCTTCCTAAGGCCCCAGTGAGG-AGTCAGGAACCAAGGTCATCTTGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14392265 141 - 49578535 AGGAGCAAACATGGCAGGCAGCGTCGGCTTCCAGAAGCCTGAGTTCCACAAAAACGACGGGGACGCCCATCCTCAGGGGCTGTGATGGGAAATC--TTCCTCCTAGGGCCCCAGCAAGG-AGTCAGGAAGCAAGGTCAACTTTA i calJac3.chr19 C 0 I 10 s mm10.chr1 178889097 135 + 195471971 ATAAGCAAGCACTCCAGGTAGCATCTACTTCCAGAAGTCCCTGTCTCACCAAAG-GGCCAGAGCACCCGTTTGCAG--CCTGTAGCGG-AACTC-TTGCTTCCTCAGGCTCAAGTAAGG----TAAGGCTCAATATTATTTTAA i mm10.chr1 I 503 I 2 s canFam3.chr7 36472509 138 + 80974532 ----GCAAGCCAGACCACCAGGAGCCACTTCAAGAGGTTTCCACGCCATAGAAGCAATACAGA-GCCCACCATCAGGGTCTCAGATGGGAACACGTTTCCTCCTACGGCCCTAGTGAGGCCAGCAGGAGCCAAGGCCATATTA- i canFam3.chr7 C 0 C 0 a score=1233671.000000 s hg38.chr1_KI270759v1_alt 345507 472 + 425601 AGCTTGTAGCATCGGGACACACCAGTTCATTCAAAGCAGCAGGCAGCACTAGAAGCTCAAGTTCAAATCAGTGACTTGAAAGGAAA-------TGACACTTCATAAGTAGAGGCAGCTTTTTC-AAAATGCAAGCAC--CTTCTCATCCAAGAGAGG----GTGGGGTTCTGGCACCTGTGGGTCACACTTGTGGCAGCAGGCCCAGCATT--GGCAGGAACTT-CAGGACGAGCCTCT--GAAGGATGT--GGACATTCCCCT-CCTTGCCTGGAGAAGTGCTTCCTCCTAGAGCCCATGGAGATTTGGGATTAGCCTCTCCTTTCTCAGAACTGGAAACCCAGTACTCAAG--GTC-TGGGAAGCTGGGGAAAGGGGCTCAAGATTGCTGTTAGCTAGAGCggggttccaaacccccaggccacagattggtacaggtccctggcttgttgggaaccagcctgcacagcaggaggtgagcagtgggggagcatga s panTro4.chr1 225101218 474 + 228333871 AGCTTGTAGCATTGGGACACACCAGTTCATTCAAAGCAGCAGGCAGCACTAGAAGCTCAAGTTCAAATCAGTGACTTGAAAGGAAA-------TGACACTTCATAAGTAGAGGCAGCTTTTTC-AAAACGCAAGCAC--ATTCTCATCCAAGAGAGG----GTGGGGTGCTGGCACCTGCGGGTCACACTTGTGGCAGCAGGCCCAGCATT--GGCAGGAACTT-CAGGACGAGCCTCTCTGAAGGATGC--GGACATTCCCTT-CCTTGCCTGGAGAAGTGTTTCCTCCTAGAGCCCATGGAGATTTGGGGTTAGCCTCTCCTTTCTCAGAACTGGAAACCCAGTACTCAAG--GTC-TGGGAAGCTGGGGAAAGGGGCTCAAGATTGCTGTTAGCTAGAGCggggttccaaacccccaggccacagattggtacaggtccctggcttgttaggaaccggcctgcacagcaggaggtgagcagtgggggagcatga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226475134 475 - 229942017 AGCTTGTAGCATCGGAGCACACCAGTTCATTCAAAGCAGCAGGCAGCACTAGAAGCTCAAGTTCAAATCAGTGACTTGAAAGGAAA-------TGACACTTCATAAGTAGAGGCAGCTTTTTC-AAAATGCAAGCAC--CTTCTCATCCAAGAGAGG----GTGGGGTGCTGGCACCTGCGGGTCGCACTTGCAGCAGCAGGCCCAGCATT--GGCAGGAACTT-AAGGACGAGCCTCTCTGAAGGATGC--AGACATTCCCCT-CCTTGCCTGGAGAAGTGCTTCCTCCTAGAGCCCATGGAGATTTGGGGTTAGCCTCTCCTTTCTCAGAACTGGAAACCCAGTACTCAAG--GTCTTGGGAAGCTGGGGAAAGGGGCTCAAGATTGCTGTTAGCTAGAGCggggttccaaacccccagaccacagattggtacaggtccctggcccgttaggaactggcctgcacagcaggaggtgagcagtgggggagcatga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140360646 476 - 143122389 AGCTTGTAGCGTCGGAGCACACCAGTTCATTCAAAGCAGCAGGCAGCACCAGAAGCTCAAGTTCAAATCAGTGACTTGAAAGGAAA-------TGACACTTCATAAGTAGAGGCAGCTTTTTC-AAAATGCAAGCACCTCTTCTCATCAAAGAGAGG----GTGGGGTGCTGGCACCTGCGGGTCGCACTTGCGGCAGCAGGCCCAGCATT--GGCAGGAACTT-CGGGACCAGCCTCCCTGAAGGATGC--AGACATTCCCCT-CCTTGCCTGGAGAAGTGCTTCCTCGTAGAGCCCATGGAGATTTGGGGTTAGCCTCTCCTTTCTCAGAACTGGAAACCCAATGCTCAAG--GTC-TGGGAAGCTGGGGAAAGGGGCTCAAGATTGCTGTTAGCTACAGCggggttccaaacccccaggccacagactggtacaggtccctggcctgttaggaaccggcctgcacagcaggaggtgagcagtgggggaccgtga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17065857 474 - 229590362 AG-TTGTAGCATCGGAGCACAGCAGTTCATTCAAAGCAGCAGGCAGCACTAGAAGCTCAGGTTCAAGTCAGTGACTTGAAAGGAAA-------TGATACTTCATAAGTAGAGGCAGCTTTTTC-AAAATGCAAGCGCGTCTTCTCTTCCAAGAGAGG----GTGGGGCGCTGGCACCTGTGGGTCGCACGTGTGGCAGCAGGCCCAGCACT--GGCAGGAACTT-CAGGACGAGCCCCTCTGAAGGATGC--GGACATTCCCCTCCCTTGCCTGGAGAAGCGTTTCTTCCTAGAGCCCATGGAGATTTGGGCTTAGTCTCTGCTTTCTCAGAACTGGGAACCCGGTACTCAAG--GTC-TGGGAAGCTGGGGAAAGGGGCTCAAGATTGCTGTTAGCTAGAGCggggtcccaaacccccaggccacagactggtacaggtccctggcctgttaggaaccggcctgcacagcaggaggtgagcagt--gggagcacga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223830074 474 - 227556264 AG-TTGTAGCATCGGAGCACAGCAGTTCATTCAAAGCAGCAGGCAGCACTAGAAGCTCAGGTTCAAGTCAGTGACTTGAAAGGAAA-------TGACACTTCATAAGTAGAGGCAGCTTTTTC-AAAATGCAAGCGCGTCTTCTCTTCCAAGAGAGG----GTGGGGCGCTGGCACCTGCGGGTCGCACGTGTGGCAGCAGGCCCAGCACT--GGCAGGAACTT-CAGGACGAGCCCCTCTGAAGGATGC--GGACATTCCCCTCCCTTGCCTGGAGAAGCGTTTCTTCCTAGAGCCCATGGAGATTTGGGCTGAGTCTCTGCTTTCTCAGAACTGGGAACCCGGTACTCAAG--GTC-TGGGAAGCTGGGGAAAGGGGCTCAAGATTGCTGTTAGCTAGAGCggggtcccaaacccccaggccacagactggtacaggtccctggcctgttaggaaccggcctgcacagcaggaggtgagcagt--gggagcacga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16880227 475 - 220367699 AGCTTGTAGCATCGGAGCACAGCAGTTCATTCAAAGCAGCAGGCAGCACTAGAAGCTCAGGTTCAAGTCAGTGACTTGAAAGGAAA-------TGACACTTCATAAGTAGAGGCAGCTTTTTC-AAAATGCAAGCGCCTCTTCTCATCC-AGAGAGG----GTGGGGTGCTGGCACCTGCGGGTCGCACGTGTGGCAGCAGGCCCAGCACT--GGCAGGAAGTT-CAGGACGAGCCTCTCTGAAGGATGC--GGACATTCCCCTCCCTTGCCTGGAGAAGCGCTTCTTCCTAGAGTCCATGGAGATTTGGGCTGAGTCTCTGCTTTCTCAGAACTGGAAACCCGGTACTCAAG--GTC-TGGGAAGCTGGGCAAAGGGGCTCAAGATTGCTGTTAGCTAGAGCGGGATCCC-AAtccccaggccacagactggtacaggtccctggcctgttaggaaccggcctgcacagcaggaggtgagcagtgggggAGCACGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82681629 475 + 85787240 AG-TTGTAGCATCGGAGCACAGCAGTTCATTCAAAGCAGCAGGCAGCACTAGAAGCTCAGGTTCAAGTCAGTGACTTGAAAGGAAA-------TGACACTTCATAAGTAGAGGCAGCTTTTTC-AAAATGCAAGCGCGTCTTCTCATCCAACAGAGG----GTGGGGTGCTGGCACCTGCGGGTCGCACGTGTGGCAGCAGGCCCAGCACT--GGCAGGAACTT-CAGGATGAGCCCCTCTGAAGGATGC--GGACATTCCCCTCCCTTGCCTGGAGAAGCGCTTCTTCCTAGAGTCCATGGAGATTTGGGCTTAGTCTCTGCTTTCTCAGAACTGGAAACCCGGTACTCAAG--GTC-TGGGAAGCTGGGGAAAGGGGCTCAAGATTGCTGTTAGCTAGAGCggggtccc-aatccctaggccacagactggtacaggtccctggcctgttaggaaccggcctgcacagcaggaggtgagcagtgggggagcacga i chlSab2.chr25 C 0 C 0 s mm10.chr1 178889234 382 + 195471971 ATTTCATGGCACCTGAGCACAGCAATCCCCTCAAACCAGCAGGCAATGCTAAAA--CCAAATGCCAGTCAGAGACTCAGGGGGGGCGGAGGGTTGGTGTTTCATACACAGAGACCGTTTTTCCTAAAATGTTAACACTTCTGCTCATTTGAGAGACA----GTGGGGTGCAGATGCCTGCAGACACCAGGTGCAGCAGCAGGTCTGCCATTTGGGCTGCA-----CAGGGCCACCACTGCTGGCACAGGCCTTAAAAGTCTCATCACTCA--------------TCTTCCCAGTGTCTGCATAGATTTGGGGGT--TCTCCATTACCTCAGAACTGGGAACTC---ACTGAAGAAGTT-TGGGAGACTGGA-----------AGGGTTGTGGGAAACTGGGGCA--------------CATGTTACAAATTG---------------CTGTTA-------------------------------------------- i mm10.chr1 I 2 C 0 s canFam3.chr7 36472647 392 + 80974532 AGAATGTGCCATC--ATCAGAGCTGCTCATTCAAGTCAGCGAGCAGCCCTGGAAATTCAAATTCAAGTCTGTGACTTTTGGAGAAA-------TTACATTTCATAAACAGAGGCAGCTTTTCC-AAAATGTCCACAC---TTCTCATATGTGAGGGGCTGTGTGGAATACAGG-----GGAGGTTCCA---GTGACCACAGGCCTGCATTC--AGCAGGCCTTTCCAGGACTTGCATCTCGGAAGAAGGC--AGAAATACCTCTTTCTTGCCTTGAGAAATATTTTCTCCTACTAGCCATTTAGAT--------AGCCTCTGTTCTCCCCAAACTGGAGACTG---GTTCTGT--GTC-TGGGAAGCTCAGCAAGGGAGCTATGGATTGATATTAGCTACAATACTATT------------------------------TCCCTGGTTGAT------------------------------------GGGGACATGA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14392406 10 - 49578535 I a score=35070.000000 s hg38.chr1_KI270759v1_alt 345979 22 + 425601 ccacctgagggctgttggctgt s panTro4.chr1 225101692 22 + 228333871 ccacctgagggccgttggctgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226475609 22 - 229942017 ccacctgagggccgttggctgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140361122 22 - 143122389 ccgtctgagtgccgttggctgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17066331 22 - 229590362 ccgcctgagtgccgcctcctgc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223830548 22 - 227556264 ccacctgagtgccgcctcctgc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16880702 22 - 220367699 CCGCCTGAGTGCCGCCTCCTGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82682104 22 + 85787240 ccgcctgagtgccgcctcctgc i chlSab2.chr25 C 0 C 0 s mm10.chr1 178889616 5 + 195471971 ----------GCCGT------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36473039 0 + 80974532 C e calJac3.chr19 14392406 10 - 49578535 I a score=171917.000000 s hg38.chr1_KI270759v1_alt 346001 88 + 425601 ctgatcagtggtggcactggattctcataggaacctcatgctattgtgaactgtgtgtgcgagggatctagcctgtgcg------------------------------------ctccttatg s panTro4.chr1 225101714 88 + 228333871 ctgatcagcggtggcactggattctcataggaacctcatgctattgtgaactgtgcgtgcgagggatctagcctgtgcg------------------------------------ctccttatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226475631 88 - 229942017 ctgatcagtggtggcactggattctcataggaacctcgtgctattgtgaactgcgtgttcgagggatctagcttgtgtg------------------------------------cttcttatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140361144 88 - 143122389 ctgatcagtggtggcactggattctcataggaaccccgggctattgtgacctgcacacgcaagggatctagcttgtgtg------------------------------------ctccttatg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17066353 121 - 229590362 ctgatga---gtggcactggattctcataggaacttcgtgctgttgtgaactgtgcgtgtgagggatctagcttgtgcgctgctggtgagaatctaatgcctgatgacttgtgcactgctggtg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223830570 85 - 227556264 ctgatga---gtggcactggattctcataggaacttcgtgctgttgtgaactgtgcgtgtgagggatctagcttgtgtg------------------------------------ctgctggtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16880724 85 - 220367699 TTGATGA---GTGGCACTGGATTCTCATAGGAACGTCGTGCTGTTGTGAACTGTGCGTGTGAGGGATCTAGCTTGTGcg------------------------------------ctccttgtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82682126 85 + 85787240 ctgatga---gtggcgctggattctcataggaactttgtgctgttgtgaactgtgcgtgtgagggatctagcctgtgcg------------------------------------ctgcttgtg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178889621 0 + 195471971 C e canFam3.chr7 36473039 0 + 80974532 C e calJac3.chr19 14392406 10 - 49578535 I a score=146251.000000 s hg38.chr1_KI270759v1_alt 346089 46 + 425601 agaatctaatgcctgatgatctgaggtggagcagtctcatccccaa s panTro4.chr1 225101802 46 + 228333871 agaatcgaatgcctgatgatctgaggtggagcagtttcatccccaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226475719 46 - 229942017 agaatctaatgcctgatgatctgaggtggagcagtttcatcccaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140361232 46 - 143122389 agaatctaatgcctgatgatctgagatggagcagtttcatcccaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17066474 46 - 229590362 agaatctaatgcctgatgatctgaggtggagcagtttcatcccaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223830655 46 - 227556264 agaatctaatgcctgatgatctgaggtggagcagtttcatcccaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16880809 46 - 220367699 agaatctaatgcctgatgatctgaggtggagcagttTCCTCCCAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82682211 46 + 85787240 agaatctaatgcctgatgatctgaggtggagcagtttcatcccaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14392416 46 - 49578535 agaatctaatgcctgatgatctgaggtggaacagtttcataccaaa i calJac3.chr19 I 10 C 0 e mm10.chr1 178889621 0 + 195471971 C e canFam3.chr7 36473039 0 + 80974532 C a score=42498.000000 s hg38.chr1_KI270759v1_alt 346135 12 + 425601 accattccctac s panTro4.chr1 225101848 12 + 228333871 accattccctat i panTro4.chr1 C 0 I 21 s ponAbe2.chr1 226475765 12 - 229942017 accattccctcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140361278 12 - 143122389 accattccctac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17066520 12 - 229590362 accattccctac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223830701 12 - 227556264 accattccctac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16880855 12 - 220367699 ACCATTCCCTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82682257 12 + 85787240 accattccctac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14392462 12 - 49578535 accattccctac i calJac3.chr19 C 0 C 0 s mm10.chr1 178889621 12 + 195471971 GACATCCCATAC i mm10.chr1 C 0 C 0 e canFam3.chr7 36473039 0 + 80974532 C a score=30847.000000 s hg38.chr1_KI270759v1_alt 346147 15 + 425601 tcccattgggtccat s ponAbe2.chr1 226475777 15 - 229942017 tcccactgggtccgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140361290 15 - 143122389 tcccattgggtccgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17066532 15 - 229590362 tcccatggggtccat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223830713 15 - 227556264 tcccatggggtccat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16880867 15 - 220367699 TCCCATTGGGTCCAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82682269 15 + 85787240 tcccactgggtccat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14392474 15 - 49578535 tcccattgggtccgt i calJac3.chr19 C 0 I 1 s mm10.chr1 178889633 3 + 195471971 -CCC----------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36473039 0 + 80974532 C e panTro4.chr1 225101860 21 + 228333871 I a score=298010.000000 s hg38.chr1_KI270759v1_alt 346162 116 + 425601 ggagaaattgtcttccacgaaacctgtccctggtgccaaaaaggtAAAAGGGTTTGGGACTGCGGAGCCATGGCATTGAATT-CCCATCTCACACAGGAGAGGAAAGGCT-CTTCCTC s panTro4.chr1 225101881 116 + 228333871 ggagaaattgtcttccacaaaacctgtccctggtgccaaaaaggtAAAAAGGTTTGGGACTGTGGAGCCACGGCGTTGGATT-CCCATCTCACACAGGAGAGGAAAGGCT-CTTCCTC i panTro4.chr1 I 21 C 0 s ponAbe2.chr1 226475792 116 - 229942017 ggagaaattgtcttccatgaaacctgtcccaggtgccaaaaaggtAAAAAGGTTTGGGACTGCAGAGTCACAGTGTTCAATT-CCCATCTCACACAGGAGAGGAAAGGCT-CTTCCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140361305 116 - 143122389 ggagaaattgtcttccacgaaacctgtccctggtgccaaaaaggtAAAAAGGTTAGGGACTGTGGAGCCACAGCATTCAATT-CCCATCTCACACAGGAGAGGAAAGGCT-CTTCCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17066547 116 - 229590362 ggagaaattgtcttccacgaaacctgtccctggtgccagaaaggtCAAAATGTTAGGGAGTGCGGAGCCACAGCGTTCAATT-CCCATCTCACACAGGAGAGGAAAGGTT-CTTTCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223830728 116 - 227556264 ggagaaattgtcttccacgaaacctgtccctggtgccagaaaggtCAAAATGTTAGGGAGTGTGGAGCCACAGCGTTCAGTT-CCCATCTCACACAGGAGACGAAACGCT-CTTCCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16880882 116 - 220367699 GgagaaattgtcttccacgaaacctgtccctggtgccaaaaaggtcaAAAGGTTAGGGAGTGCGGAGCCACAGCGTTCAATT-CCCATCTCACACAGGAGAGGAAAGGCT-CTTCCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82682284 116 + 85787240 ggagaaattgtcttccacgaaacctgtccctggtgccagaaaggtCAAAAGGTTAGGGAGTGCGGAGCCACAGCGTTCAATT-CGCATCTCACACAGGAGAGGAAAGGCT-CTTCCTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14392490 110 - 49578535 ggggaaattgtcttctgtgaaagctgtcactgatgccacagag--------gttaggcactgctgGGCGACAGCATTCAATTCCCCGTCTCACACAGGAGAGGAAAGGCTGCTTCCTC i calJac3.chr19 I 1 C 0 s mm10.chr1 178889636 24 + 195471971 ---------------------------------------------------------------------------------T-GCCATCACAC-----------AGTCCT-ATTTCTC i mm10.chr1 C 0 C 0 e canFam3.chr7 36473039 0 + 80974532 C a score=3258484.000000 s hg38.chr1_KI270759v1_alt 346278 946 + 425601 AGGACTTGGATGTATATTACTTAGACGTACCATGAAATTAAGTAGATATTTGCCAGG---AAAAATGCAAAGGAGTATCAGTTCTCCAGATTTGTTTAAGATAGCATGAAAC---GGAGAGGTTC-ATGTAAGAATCt--------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-----------------------gAGAGAGACATATGCATATTTAACCTCCTTTAAATGTACATTAATGCTGTATTTTCTCCCCCTGATTTACAGGGAGAATATCAATTTAGAACTATTTGCACAAACTCTAGATACCAGTTTAGAGCGTTCCCTATTTAGAAATAAAATAACCAAAGTCTCAGGTTGCCAGGCAACTGCAGCAATGATAATTCTTAGTATTGCTGCTTTAGAAATACTCATTTTTATACATTTTAGTGATGGTTAGGATGCAGAGAATGTGAGTTCAGAATGTCGCTGGGACATCGA---AGTCCC-----------------------TTTTCTATGAGATT-TTTAGCATT---CTCACTTGCTTTTATTTTT-CCCCCTTAGCTCTGTTTGCTTCCTTGGCTAGCGGTATCTTCATATTTAGCTATAGAAATCTCGAGAGATTGTTATTATTTTCTTAAGAGTTGAGGCAGAAGCTGCCACTACATTAATTCTGCCAGGCTCATTATAGAACCACGCCAGTCACTCAGGGAGAAATGACACCGTCTGGG----GATCGGCCGGGGTCACAAACACTGGGTTCAAGCTTTGGTTGTTCTGCCGCTAGTTTGACACATGAACTCTACACCTCGTCCTTTTCATTCTTAAGAGGACCACATTCTGGCCCCTCTCAGAGCTTCACTGAATTGGGAACAGAATATCAGGCCCCAGCTCTGTCATCATCTCTTGGCGGCAAAGCCACGGCTCATG-TTTTTGTCTGTCCA---CTGCAG-CAGCCGTTGTGGCGTAATGGCACATGATGGTCTCGGGGCTGG s panTro4.chr1 225101997 946 + 228333871 AGGACTTGGATGTATATTACTTAGACCTACCATGAAATTAAGTAGATATTTGCCAGG---AAAAATGCAAAGGAGTATCAGTTCTCCAGATTT----AAGATAGCATGAAAC---GGAGAGGTTC-ATGTAAGAATCt--------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgG-------A-------------GAGAGAGAGACATATGCATATTTAACCTCCTTTAAATGTACATTAATGCTGTATTTTCTCCCCCTGATTTACAGGGAGAATATCAATTTAGAACTATTTGCACAAACTCCAGATACCAGTTTAGAGTGTTCCCTATTTAGAAATAAAATAACCAAAGTCTCAGGTTGCCAGGCAACTGCAGCAATGATAATTCTTAGTATTGCTGCTTTAGAAATACTCATTTTTATACATTTTAATGATGGTTAGGATGCAGAGAATGTGAGTTCAGAATGTCGCTGGGACATCGA---AGTCCC-----------------------TTTTCTATGAGATT-TTTAGCATT---CTCATTTGCTTTTATTTTTTCCCCCTTAGCTCTGTTTGCTTCCTTGGCTAGCGGTATCTTCATATTTAGCTATAGAAATCTCGAGAGATTGTTATTATTTTCTTAAGAGTTGAGGCAGAAGCTGCCACTACATTAATTCTGCCAGGCTCATTATAGAACCACGCCAGTCACTCAGGGAGAAATGACACCGTCTGGG----GATCGGCCGGGGTCGCAAACACTGGGTTCAAGCTTTGGTTGTTCTGCCGCTTGTTTGACACATGATCTCTGCACCTCGTCCTTTTCATTCTCAAGAGGACCACATTCTGGCCCCTCTCAGAGCTTCACTGAATTGGGAACAGAATATCAGGCCCCAGCTCTGTCATCATCTCTTGGCAGCAAAGCCACGGCTCATG-TTTTTGTCTGTCCA---CTGCAG-CAGCCGCTGTGGCGTAATGGCACATAATGGTCTCGGGGCTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226475908 925 - 229942017 GGGACTTGGATGTATATTATTTAGACGTACCATGAAATTAAGTAGATATTTGCCAGG---AAAAATGCAAAGGAGTATCAGTTCTCCAGATTTGTTTAAGATAGCATGAAAT---GGAGAGGTTC-ATGTAAGAATCt--------gtgtgtgtgtgtgtgtgtgtgAGAGA---------------------------------------------GAGAGAGACATATGCATATTTAACCTCCTTTAAATGTACATTAATGCTGTATTTTCTCCTCCTGATTTACAGGGAGAATATCAATTTAGAACTATTTGCACAAACTCCAGATACCAGTTTAGAGCATTCCCTATTTAGAAATAAAATAACCAAAGTCTCAGGTTGCCAGGCAACTGCAGCAATGATAATTCTTAGTATTGCTGCTTTAGAAATACTCATTTTTATACATTTTAATGATGGTTAGGATGCAGAGAATGTGAGTTCAGAATGTCGCTGGGACATCGA---GGTCCC-----------------------TTTTCTATGAGATT-TTTAGCATT---CTCACTTGCTTTTATTTTTTCCCTCTTAGCTCTGTTTGCTTCCTTGGCTAGCGGTATCTTCATATTTAGCTATAGAAATCTCAAGAGATTGTTATTATTTTCTTAAGAGTTGAGGCAGAAGCTGCCACTACATTAATTCTGCCAGGCTCATTATAGAACCACACCAGTCACTCAGGGAGAAATGACACTGTCTGGG----GATCAGCCGGGGTCACAAACACTGGGTTCAAGCTTTGGTTGTTCTGCCGCTGGTTTGACACATGAACTCTACACCTCGTCCTTTTCATTCTCAAGAGGACCACGTTCTGGCCCCTCTCAGAGCTTCACTGAATTGGGAACAGAATATCAGGCCCCAGCTCCATCATCATCTCTTGGCAGCAAAGCCACGGCTCATG-TTTTTGTCTGTCCA---CTGCAG-CAGCCGCTGTGGTGTAATGGGACCTAATGGTCTCGGGGCTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140361421 953 - 143122389 AGGACTTGGATGGATATTATTTAGACGTACCATGACATTAAGTAGATATTTGTCAGG---AAAAATTCAAAGGAGTATCAGTTCTCCAGATTTGTTTAAGATAGCATGAAAC-AGGGAGAGGTTC-ATGTGAGAAtct--------ctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagacaga-------------gagagagagaCATATGCATATTTAACCTCCTTTAAATGTACATTAATGCTGTATTTTCTCCTCCTGATTTACAGAGAGAATATCAATTTAGAACTATTTGCACAAACTCCAGATACCAGTTTAGAGCATTCCCTGTTTAGAAATAAAATAACCAAAGTCTCAGGTTGCCAGGCAACTGCAGCAATGATAATTCTTAGTATTGCTGCTTTAGAAATACTCATTTTTATACATTTTAATGA----CAGGATGCAGAGAACGTGAGTTCAGAATGTCGCTGGGACATCGA---AGTCCC-----------------------TTTTCTATGAGATT-TTTAGCATT---CTCACTTGCTTTTATTTTT-CCCTCTTAGCTCTGTTTGCTTCCTTGCCTAGCGGTATCTTCATATTTAGCTATAGAAATGTTGAGAGATTGTTATTATTTTCTTAAGAGTTGAGGCAGAAGCTGCCACTAAATTAATTCTGCCAGGCTCATTATAGAACCATGCAAGTCACTCAGGGAGAAATGACACCGTCTGGG----GATCGGCCGGGGTCACAAACACTGGGTTCAAGCTTTGATTGTTCTGCCGCTGGTTTGACAC-TGAACTCTACACCTCGTCCTTTTCATTCTCAAGAGGACCACATTCTGGCCCCTCTCAGAGCTTCCCTGAATTGGGAACAGAATATCAGGACCCAGCTCTGTCATCATCTCTTGGCAGCAAAGCCACGGCTCATG-TTTTTGTCTGTCCA---CTGCAG-CAGCCACTGTGGCATAATGGGACATAATGGTCTCAGGGCTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17066663 930 - 229590362 CGGACTTGGATGTATGTTACTTAGATGTACCATGAAATTAAGTAGATATTTGTCAGG---AAAAATGCAAAGGAGTATCAGTTCTCCAGATTTGTTTAAGATAGCATGAAAC-AGGGAGACGTGC-ATGTAAGAATCt--------gtgtgtg----tgtgtctgtg--------------------tgtgtgAGAGAGACA-------------GAGAGAGAGACATATGCATACTTAACCTCCTTCAAATGTATATTAATGCTGTATTATCTCCTCCTGATTTACAGGGAGAATATCAATTTAGAACTATTTGCACAAACTCCAGATACCAGTTTAGAGCACTCCCTGTTTAGAAATAAAATAACCAAAGTCTCAGGTTGCCAGGCAACTGCAGCAATGATAATTCTTAGTATTGCTGCTTTAGAAATACTCATTTTTATACATTTTAATGACTGTTAGGATGCAGAGAACGTGAGTTCAGAATGTCACTGGGACATCGA---AGTCCC-----------------------TTTTCTATGAGATT-TTTAGCATT---CTCACTTGCTTTTTTTTTC-CC--CTTAGCTCTGTTTGCTTCCTTGGCTAGTGGTATCTTCATATTTAGCTATAGAAATCTCGAGAGGTTGTTATTATTTTCTTAAGAGTTGAGGCAGAAGCTGCCACTAAATTAATTCTGCCAGGCTCATTAGAGAACCACACCAGTCACTCAGGGAGAAGTGACACCTTCTGGG----GATTGGCTGCGGTCACCAGCCCTGGGTTCAAGCTTTGGTTGTTCAGCCGCTGGTTTGACACGTGAACTCTACACCTCGTCCTTTTCATTCTCAAGAGGACCATGCTCTAGCCCCTGTCAGAGCTTCACTGAATTGGGAAC--AATCTCAGGTCCCAGCTCTGTCGTCATCTCTTGGCAGCAAAGCCACGGCTCATG-TTTTTGTCTGTCCA---TTGCAG-CAGCTGCTGTGGCATAACGGGACGTAACGATCTCAGGCCTGG i rheMac3.chr1 C 0 I 6 s macFas5.chr1 223830844 936 - 227556264 CGGACTTGGATGTATGTTACTTAGATGTACCATGAAATTAAGTAGATATTTGTCAGG---AAAAATGCAAAGGAGTATCAGTTCTCCAGATTTGTTTAAGATAGCATGAAAC-AGGGAGACGTGC-ATGTAAGAAtct--------gtgtgtgtgtctgtgtgtgtg--------------------tatgtgtgtgtgtgA-------------GAGAGAGAGACATATGCATATTTAACCTCCTTTAAATGTATATTAATGCTGTATTATCTCCTCCTGATTTACAGGGAGAATATCAATTTAGAACTATTTGCACAAACTCCAGATACCAGTTTAGAGCACTCCCTGTTTAGAAATAAAATAACCAAAGTCTCAGGTTGCCAGGCAACTGCAGCAATGATAATTCTTAGTATTGCTGCTTTAGAAATACTCATTTTTATACATTTTAATGACTGTTAGGATGCAGAGAACGTGAGTTCAGAATGTCACTGGGACATCGA---AGTCCC-----------------------TTTTCTATGAGATT-TTTAGCATT---CTCACTTGCTTTTTTTTTC-CCCTCTTAGCTCTGTTTGCTTCCTTGGCTAGTGGTATCTTCATATTTAGCTATAGAAATCTCGAGAGGTTGTTATTATTTTCTTAAGAGTTGAGGCAGAAGCTGCCACTAAATTAATTCTGCCAGGCTCATTAGAGAACCACGCCAGTCACTCAGGGAGAAGTGACACCTTCTGGG----GATTGGCTGCGGTCACCAGCCCTGGGTTCAAGCTTTGGTTGTTCAGCCGCTGGTTTGACACATGAACTCTACACCTCGTCCTTTTCATTCTCAAGAGGACCATGCTCTAGCCCCTCTCAGAGCTTCACTGAATTGGGAAC--AATATCAGGTCCCAGCTCTGTCGTCATCTCTTGGCAGCAAAGCCACGGCTCATG-TTTTTGTCTGTCCA---TTGCAG-CAGCTGCTGTGGCATAACGGGACGTAACGATCTCAGGCCTGG i macFas5.chr1 C 0 I 3 s papAnu2.chr1 16880998 934 - 220367699 CGGACTTGGATGTATGTTACTTAGATGTACCGTGAAATTAAGTAGATATTTGTCAGG---AAAAATGCAAAGGAGTATCAGTTCTCCAGATTTGTTTAAGATAGCATGAAAC-AGGGAGACGTTC-ATGTAagaatct--------ttgtgtgtg--tgtgtctgtg--------------------tgtgtgtgagagaca-------------gagagagagacatatgCATATTTAACCTCCTTTAAATGTATATTAATGCTGTATTATCTCCTCCTGATTTACAGGGAGAATATCAATTTAGAACTATTTGCACAAACTCCAGATACCAGTTTAGAGCACTCCctgtttagaaataaaataaccaaagtCTCAGGTTGCCAGGCAACTGCAGCAATGATAATTCTTAGTATTGCTGTTTTAGAAATAcccatttttatacattttaatgacTGTTAGGATGCAGAGAACGTGAGTTCAGAATGTCACTGGGACATCGA---AGTCCC-----------------------TTTTCTATGAGATT-TTTAGCATT---ctcacttgcttttattttt-ccctcttagcTCTGTTTGCTTCCTTGGCTAGCGATATCTTCATATTTAGCTATAGAAATCTCAAGaggttgttattattttcttaagagtTGAGGCAGAAGCTGCCACTAAATTAATTCTGGCAAGCTCATTAGAGAACCACGCCAGTCACTCAGAGAGAAGTGACACCTTCTGGG----TATTGGCTGCGGTCACGAGCCCTGGGTTCAAGCTTTGGTTGTTCAGCCGCTGGTTTGACACATGAACTCTACACCTCGTCCTTTTCATTCTCAAGAGGACCATGCTCTAGCCCCTCTCAGAGCTTCACTGAATTGGGAAC--AAGATCAGGTCCCAGCTCTGTCGTCATCTCTTGGCAGCAAAGCCACAGCTCATG-TTTTTGTCTGTCCA---TTGCAG-CAGCTGCTGTGGCATAACGGGACGTAACGATCTCAGGCCTAG i papAnu2.chr1 C 0 I 3 s chlSab2.chr25 82682400 956 + 85787240 GGTACTTGGATGTATGTTATTTAGATGTACCATGAAATTAAGTAGATATTTGTCAGG---AAGAATGCAAAGGAGTATCAGTTCTCCAGATTTGTTTAAGACAGCATGAAAC-AGGGAGACGTTC-ATGTAAGAATCT--------TtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtatgtgtctgtgtgtgtgAGAGA-------------GACAGAGAGACATATGCATATTTAACCTCCTTTAAATGTATATTAATGCTGTATTATCTCCTCCTGATTTACAGGGAGAATATCAATTTAGAACTATTTGCACAAACTCCAGATACCAGTTTAGAGCATTCCCTGTTTAGAAATAAAATAACCAAAGTCTCAGGTTGCCAGGCAACTGCAGCAATGATAATTCTTAGTATTGCTGCTTTAGAAATACTCATTTTTATACATTTTAATGACTGTTAGGATGCAGAGAACGTGAGTTCAGAATGTCACTGGGACATTGA---AGTCCC-----------------------TTTTCTATGAGATT-TTTAGCATT---CTCACTTGCTTTTATTTTT-CCCTCTTAGCTCTGTTTGCTTCCTTGGCTAGTGGTATCTTCATATTTAGCTATAGAAATCTCGAGAGGTTGTTATTATTTTCTTAAGAGTTGAGGCAGAAGCTGCGACTAAATTAATTCTGCCAGGCTCATTAGAGAACCACGCCAGTCACTCAGGGAGAAGTGACACCTTCTGGG----GATTGGCTGCGGTCACAAGCCCTGGGTTCAAGCTTTGGTTGTTCAGCCGCTGGTTTGACACATGAACTCTACACCTCGTCCTTTTCATTCTCAAGAGGACCATGCTCTAGCCTCTCTCAGAGCTTCACTGAATTGGGAAC--AATATCAGGTCCCAGCTCTGTCGTCATCTCTTGGCAGCAAAGCCACGGCTCATG-TTTTTGTCTGTCCA---TTGAAG-CAGCTGCTGTGGCATAATGGGACATAACGATCTCAGGCCTGG i chlSab2.chr25 C 0 I 3 s calJac3.chr19 14392600 904 - 49578535 AGGACTCAGAT-------------------CATGAAATTAAACAGATATTTGCCAGG---AAAAATGTAAAGGAGTATCAGTTCTCCAGATTTGCTTAAGATAGCATGAAAC---AGAGAAGCTC-ATGTATGAATCt--------gtgtgtgtgtgtgtgtgtgtg--------------------tgtgtgAGAGAGAGACGGGGGTGGGGGGGGGAGAGAGAGAGACGCATATTTCCCCTCCTTTAAATGTACATTAATGCGGTATTATCTCCTCCTGATTTATAGGGAGAACAGCAATTTAGAACTATCTGCACAAACTCCAGACACCAGTTTAGAGCATTCCCTATTTAGAAATAAAATAACCAAAGTCTCAGGTTGCCAGGCAACTGCAGCAATGGTAATTCTTAGTATTGCAGCCTTAGAAATACTCATTTTTATAAATTTTAATGACGGTTAGGCTGTGGAGAACATGCATTGAGAATGTCGCTGGGACGCCGA----GTCCC-----------------------CTTTCTGTGAGATT-TTTCGCGTC---GTCACTTGCTT---GTTTT-CCCTCTCAGCTCTGTTTGCCTCCTTGGCCAG-AGTATCTTCATATT------TAGGAATCTCCAGAGGTTGCTACTGTTTTCTTAAGAGTTGAGGCAGAAGCTGCTACTGAATTAATTCTTCCAGGCTCATTATGGAGCCACACCAGTCACTCAGGGAGAAATGACACTGTCTGGG----GA-CGGCTGGGGTCACAAGCCCTGGGTTCAGGCTTTGGTTGTTTGGCCAGTGGTTCGACACGTGAACCCTACACATCGTCGTGTTCATTCTCAAGAGGA-CACGTTCTGGGC-CTCTCACAGTGGTGCTGAATTGGAAAC--A-----GGCTCCCAGATCAGCCATCACCTCTTGGCAGGAAAGCCACAGCTTATGTTTTTTGTCTGTCCA---CCACAG-CA------GTGGCGTAATGGGACGTGACGGCCTCAGGGCTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178889660 837 + 195471971 TGGA-TTGAATGTAGATTACTTACAGGTACCATAAAATTAAATAGATACTTGTCAGGGAAAAAAATGCAAAAGAATATCAGTTCT-AAGATTGACTCAAGATAGCGTGAAATTGGGGAGAAGCTCTGTATGAGGATCC--------CTGTGTATG----------------------------------------------A-------------GAGAAGCGCACATGTGCATATTTAACCTCCTCTAAATGCACATTAATGCTGGATTATCTCC-CCTGATTTACGGGGAGAACATCAATTTAGAACTATTTGCACAAACTCCGGATACCAGTTTATAGCATTCCCTGTTTAGAAATAAAATAACCAAAGTCTCAGGTTGCCAGGCAACTGGAGCAGTGATAATTCTTAGGATTGCTGCTTTAAAAATGTTCA-TTTTATACATTTTAATGACTGTTAGGGAGCAAAGAGAGCGAGCTCAGAGCATCTCTGGGACACAGAAAGAAGTTC-----------------------TTTTTTATGAGATTGTTCAGTATCCCGCTCTCTCTCTCTTATTCCT-CCCTCCTTGCCT------CTTCCCTGGCCGTTGGTATTTTTGTAGTTCATTATAG-AATTTACAGAGACAGTTA---TTTTTTTACCAACCCAGGCAGCAATTGTCTGTTGATTAACTCCTCCGG---CGTGATA----TGTGCAAGTCATTAAGGGAGAAATGATGTGGTGTGGACTCCGCTGGGCTGCAG--------CCTGGGTTCACTCATCATTTCTTATACTCTAAGTTTGA-----------------TCGGTCCTCTC-TGGTGGGCAGAATCA--------CTCCTCCCCAAG-----------TCGGACC-----------------CTCAGTA---------TGGCCAGAACATCATAGCTGGTA-TTTTCCTCTGCCCA---CTGCCGTTAGCCACTGTTAGATAGAGAAGCACAGCCTCGCGAGGACTGG i mm10.chr1 C 0 C 0 s canFam3.chr7 36473039 914 + 80974532 AAGGTTCGAGTGTATATTATTTATATTTCATGTGAAATTAAATAGATATTTTCCATG---AAAAATGCAAAGGAGTAACATTTCTCCAGATTTACTGAAGATAGCACAGAAT-----AGAAACTC--TTTAAGAATCTTCCCATGAGCAtgtgtgtatgtgtgtgtg--------------------tgtgtgtgtgtgAGA-------------GAGAGAGAGAGAGATGCATATTTAGCAACCTTTAAATGTACATTAATGCTGTATTATCTCCTCCTGATTTACAGGGAGAACATCAATTTAGAACTATTTGCACAAACTCCGGGTACCGGTTTATAGCATTCCCTGTTTAGACATAAAATAACCAAAGTCTCAGGTTGCCAGGCAACCACAGCAATGATAATTCTTA-TATTGCTGCTTCAAAAATATTCATTTTTATACATTTTAATGACTGTTAGGATGCAGAGAAAGTGAGTCCAGAAAATCACCAGGACGGAGA---CACCTCCCTCCCACACttttttttttttttttttaatGAGATT-TTAAACTTG--------TTTCTTCTGTGCTT-CACTCCTAGCTCCTTTTACTTCCCTGGCCAGTGGTATCTTCATATTCAATTATGAGCATTTCCAGAGATTGAGAATATTTTCTTAAGAGTTTAGGCAGCAACTTCCAGTAAATAAACTCTGCCGGGTTT-TTCTGGAACCACACAGGTCATGCAGGGTG---------------------AATCGGTTGGGGTCACAAGCCCTGGGTTTAAGCACTGATCGTTTCTCCACTGGTTTAGCACACAGACTCCACGAATCCTCCTTTTTGTTCTCAAGAGAGCCACCTTTCGTCCCCGT-------------------GGAAC------TAGGCCCCTGACTTGGTCACCTTCTCTTGGCAGCAAAGCCACAGTGCAC--TTCTTCTTTGTTCAGCTGTGTCT-CATCCCCACTGG--TTACAGGCCAC-ATGCCCGGAGGACTGG i canFam3.chr7 C 0 C 0 a score=14766.000000 s hg38.chr1_KI270759v1_alt 347224 9 + 425601 GTAGAAATT s panTro4.chr1 225102943 9 + 228333871 GCAGAAATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226476833 9 - 229942017 GTAGAAATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140362374 9 - 143122389 GGAGAAATT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223831783 3 - 227556264 CTA------ i macFas5.chr1 I 3 C 0 s papAnu2.chr1 16881935 9 - 220367699 CTAGAAATC i papAnu2.chr1 I 3 C 0 s chlSab2.chr25 82683359 9 + 85787240 CTAGAAATT i chlSab2.chr25 I 3 C 0 s calJac3.chr19 14393504 9 - 49578535 GTAGAAATT i calJac3.chr19 C 0 C 0 s mm10.chr1 178890497 9 + 195471971 ATAGAAGCC i mm10.chr1 C 0 C 0 s canFam3.chr7 36473953 9 + 80974532 GTAGAAACT i canFam3.chr7 C 0 C 0 e rheMac3.chr1 17067593 6 - 229590362 I a score=546919.000000 s hg38.chr1_KI270759v1_alt 347233 179 + 425601 GGAAGGCGTCTTCCTTTCCCTTTTGGCCTTTCAAG--TGTATCTTCC-TTTATGTCTAATGTCTGGGGTTACTATT----AAA------GTCTTTCTGAATTCTGAACCAATGATCAGATAGATACAAGAGAATGATTGGGAATGAAAAGC-----C-------TGC-TAATCCTAGCAGAGT----------------------------------------------AGGAAAGGGT--------------AGACAGCCCCTT s panTro4.chr1 225102952 179 + 228333871 GGAAGGCGTCTTCCTTTCCCTTTTGGCCTTTCAAG--TTTATCTTCC-TTTATGTCTAATGTCTGGTGTTACTATT----AAG------CTCTTTCTGAATTCTGAACCAACGATCAGATAGATACAAAAGAATGATTGGGAATGAAAAGC-----C-------TGC-TAATCCTAGCAGAGT----------------------------------------------AGGAAAGGGT--------------AGACAGCCCCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226476842 179 - 229942017 GGAAGGCATCTTCCTTTCCCTTTTGGCCTTTCAAG--TTTATCTTCC-TTTATGTCTAATGTCTGGGGTTATTATT----AAA------CTCTTTCTGAATTCTGAGCCAATGATCAAATGGATACAAGAGTATGATTGGGAATGAAAAGC-----C-------TGC-TAATCCTAGCAGAGT----------------------------------------------AGGAAAGGGT--------------GGACAGCCCCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140362383 180 - 143122389 GGAAGGCGTCTTCCTTTCCCTTTTGGCCTTTCAAG--TTTATCTTCCTTTTATGTCTAATGTCTGGGGTTATTATT----AAA------CTCTTTCCAAATTCTGAACCAATGATCAAATAGATACAAGAGTATGATCGAGAATTAAACCC-----C-------TGC-TAATCCTAGCAGAGT----------------------------------------------AGGAAAGGGT--------------AGACAGCCCCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17067599 179 - 229590362 GCAAGGCGTCTTCCTTTCCCTTTTGGCTTTTCAAG--TTTATCTTCC-TTTGTGTCTAATGTCTGAGGTTATTATT----AAA------CTCTTTCCGAATTCTGAACCAATGATCAAATAGATACAAGAGGATGATTGGGAATTAAAACG-----C-------TGC-TAATCCTAGCAGAGG----------------------------------------------AGGAAAGGGT--------------AGACAGCCCCTT i rheMac3.chr1 I 6 C 0 s macFas5.chr1 223831786 179 - 227556264 GCAAGGCGTCTTCCTTTCCCTTTTGGCTTTTCAAG--TTTATCTTCC-TTTGTGTCTAATGTCTGAGGTTATTATT----AAA------CTCTTTCCGAATTCTGAACCAATGATCAAATAGATACAAGAGGATGATTGGGAATTAAAACG-----C-------TGC-TAATCCTAGCAGAGG----------------------------------------------AGGAAAGGGT--------------AGACAGCCCCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16881944 179 - 220367699 GGAAGGCgtcttcctttcccttttggcTTTTCAAG--TTTATCTTCC-TTTGTGTCTAATGTCTGAGGTTATTATT----AAA------CTCTTTCCGAATTCTGAACCAGTGATCAAATAGATACAAGAGGATGATTGGGAATTAAAACC-----C-------TGC-TAATCCTAGCAGAGG----------------------------------------------AGGAAAGGGT--------------AGACAGCCCCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82683368 178 + 85787240 GGAAGGCGTCTTCCTTTCCCTTTTGG-TTTTCTAG--TTTATCTTCA-TTTGTGTCTAATGTCTGAGGTTATTATT----AAA------CTCTTTCCGAATTCTGAACGAATGATCAAATAGATACAAGAGTATGATTGGGAATTAAAACA-----C-------TGC-TAATCCTAGCAGAGG----------------------------------------------AGGAAAGGGT--------------AGACAGCCCCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14393513 235 - 49578535 GGAAGGCATCTTCCTTTCCCTTTTGGCTTTTCAAG--TTTATCTTCC-TTTATGTCTAATGTTTGAGGTTATTATTAATCAAA------CTCTTTCCAAATTCTGAACCATTGATCAAATAGATACAAGAGTATGATTGGGAACTAAAGGCTGTGTC-------TGCTTCATCACAGTGGAGTAGAAGGAGGATTATTTCTTCCCGTCCGCAGACAGATGCCAGGACTCAGGAAAGGGT--------------AGACAGCCCCTT i calJac3.chr19 C 0 M 931 s mm10.chr1 178890506 196 + 195471971 AGGAGACTCCTCAGTTTCCCTTTGG--CTTCTGAC--TTTATCTTAG-CT------TAACTTCTGAACTTGCCGAT----GGATCTCTCTTCCTTCTAGATTTGAAGTCAGCTAGCAG-TGGACTCAAGGGTG-GACTAGGAACTGAAACC-----CCAAATCTTCT-CAATTCCAGCAGAGC----------------------------------------------AGAGGGGGCTCTCCCTGCTCCTCCACAGAGGCCCCA i mm10.chr1 C 0 I 2 s canFam3.chr7 36473962 185 + 80974532 AGGAGACATCCTCATTTCCCTTCTGGCCTTTTGAGATGTTTCCTGCC-TTTGTGTCCGGTCTTGGAGATTACTAAT----GAAACTCTCTTCCCTCCAGATTCTGAACAGACTGGCAAATAG----GAGAGTATAAATGGTAATTAAAACT-----CTTGAGC-TGCTTAGTCCTGGCAGGGA----------------------------------------------GCCAGGAGGT-------------------GCCCCTC i canFam3.chr7 C 0 C 0 a score=1256989.000000 s hg38.chr1_KI270759v1_alt 347412 480 + 425601 ------------------------CCCCAA--------------------------CCCCACGGCCTCAGTG------------------------------------GAGGAGAGAATG-GTGTGGCCTGCAGGGGAGG-----GACAGGCAGACAGCGCC-AGCTG-T--C--ACCCAGGCTCACGTTCACCAGCCTCAGCAGTCAGACCTTCTTCCTTCCTCCCTTG-GAGGAAGTGAATAGAAGGGCAGAACCGAGAGCGGGAACT--CTAT--CTTGATCTTGCTAAAGGGGTAGAAGTTCCTAATTCGTGGACTTGCTGGACCACAGGGAGGAGGAGAAAATGATTTCTAGTACTTATTTCCTGGCATTTCAGCTACATGGAAGGTAGTTAGCACGGTGCATAAATGAGCCCCCGGTGAGAG-TATTTCCCATCGTGAGC------ACCACAGC---CGGGCGTTGT---TCTC--ACtgtgcctcacaagctctgctaaatgccttatggatatttcattctgacaa------cctgtgacataggtactg---taatcatactagtatcacagatggggaaactgagacacagaaaggt s panTro4.chr1 225103131 480 + 228333871 ------------------------CCCCAA--------------------------CCCCACGGCCTCAGTG------------------------------------GAGGAGAGAATG-GTGTGGCCTGCAGGGGAGG-----GACAGGCAGACAGTGCC-AGCTG-T--C--ACCCAGGCTCACGTTCACCAGCCTCAGCAGTCAGACCTTCTTCCTTCCTCCCTTG-GAGGAAGTGAATAGAAGAGCAGAACCGAGAGCGGGAACT--CTGT--CTTGATCTTGCTAAAGGGGTAGAAGTTCCTAATTCGTGGACTTGCTGGACCACAGGGAGGAGGAGAAAATGATTTCTAGTACTTATTTCCTGGCATTTCAGCTACATGGAAGGTACTTAGCACGGTGCATAAATGAGCCCCCGGTGAGAG-TATTTCCCATCGTGAGC------ACCACAGC---CGGGCATTGT---TCTC--ACTGTGCCTCAcaagctctgctaaatgccttatggatatttcattctgacaa------cctgtgacataggtactg---taatcatactggtatcacagatggggaaactgagacacagaaaggt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226477021 486 - 229942017 ------------------------CCCCAAC-------------------------CCCCATGGCCTGAGTG------------------------------------GAGGAGAGAATG-GCGTGGCCTGCAGGGGAGG-----GACAGGCAGACAGTGCC-ACCTG-TCAC--ACCCAGGCTCACATCCACCAGCCTCAGCAGTCAGACCTTCTTCCTTCCTCCCCTG-GAAGAAGTGAAAAGAAGGGCAGAACCGAGAGCGGGAACT--CTGT--CTTGATCTTGCTAAAGGGGTAGAAGTTCCTAATTCATGGACTTGCTGGACCACAGGGAGGAGGAGAAAATGATCTCTGGTACTTATTTCCTGGCATTTCAGCTACACTGAAGGCAGTTAGCATGGTGCATAAATGAGACCCCGGTGAGCG-TATTTCACATCATGAAC------ACCACAGCT--caggtattgt---tctt--actgcgcctcacaagctgtgctaaatg-cttacggatatttaatgctgacaa------cctgtgacataggtactgtaataatcatactagtatcacagacggggaaactgggacacagaaaggt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140362563 484 - 143122389 ------------------------CCCCAA--------------------------CCCCATGGCCTGAGTG------------------------------------GAGGAGAGAATG-GCGTGGCCTGCAGGGGAGG-----GACAGGCAGACAGTGCC-AGCTG-TCAC--ACTCAGGCTCACGTTCACCAGCCTCAGCAGTCAGACCTTCTTCCCTCCTCCCTTG-GAAGAAGTGAATAGAAGGGCAGAACCGAGAGCGGGCACT--CTGT--CTTGATCTTGCTAAAGGGGTAGAAGTTCCTAATTC-TGGACTTGCTGGACCACAGGGAGGAGGAGGAAATGATTTCTCATACTTATTTCCTGGCTTTTCAGCTACACTGAAGGTAGTTAGCGCGGTGCCTAAATGAGCCCCTGGTGAGAG-TATTTCACATCGTGAAC------ACCACAGCT--CGGGCATCGT---Tctt--actgtgcctcacaagctctgctaaatgccttatggatatttaattctgacaa------cctgtgacataggtactgtagtaatcatactagtatcacagatggggaaactgagacacagaaagg- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17067778 482 - 229590362 ------------------------CCTCAAC-------------------------CCCCATGGCCTGAGTG------------------------------------GAGGAGAGAATG-GCGTGGCCTGCAGGGGAAG-----GACAGAGAGACAGTGCC-AGCTG-TCAC--ACCCAGGCTCACGTTCACCAGCCTCAGCAGTCAGACCTTCTTCCTTCCTCCCGTG-GAGGAAGTGAATAGAAGGGCAGAGCTGAGAGCAGGAACT--CTGT--CTCGATCTTGCTAAAGGGGTAGAAGTTCCTAATTCCTGGACTTGCTGGACCATAGGGAGGAGGAGAAAATGATGTCTAGTACTTATTTCCTTGCATTTCAGCTACACTGAAGGTAGTTAGCACGGTGCATAAATGAGCCCCCGGGGACAG-TATTTCACATAATGGAC------ACCACAGCT--CGGGCGTTGT---Tctt--actgcgcctcataagctgtgctaaatgccttatggatatttaattctg-----------ctgtgacataggtactgtaataatcatactagtatcacggatggggaaactgagacacagaaaggt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223831965 482 - 227556264 ------------------------CCTCAAC-------------------------CCCCATGGCCTGAGTG------------------------------------GAGGAGAGAATG-GCGTGGCCTGCAGGGGAAG-----GACAGAGAGACAGTGCC-AGCTG-TCAC--ACCCAGGCTCACGTTCACCAGCCTCAGCAGTCAGACCTTCTTCCTTCCTCCCTTG-GAGGAAGTGAATAGAAGGGCAGAGCTGAGAGCAGGAACT--CTGT--CTCGATCTTGCTAAAGGGGTAGAAGTTCCTAATTCCTGGACTTGCTGGACCATAGGGAGGAGGAGAAAATGATGTCTAGTACCTATTTCCTTGCATTTCAGCTACACTGAAGGTAGTTAGCACGGTGCATAAATGAGCCCCCGGGGACAG-TATTTCACATAATGGAC------ACCACAGCT--CGGGCGTTGT---Tctt--actgcgcctcataagctgtgctaaatgccttatggatatttaattctg-----------ctgtgacataggtactgtaataatcatactagtatcacggatggggaaactgagacacagaaaggt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16882123 486 - 220367699 ------------------------CCTCAAC-------------------------CCCCATAGCCTGAGTG------------------------------------GAGGAGAGAATG-GCGTGGCCTGCAGGGGAAG-----GACAGAGAGACGGTGCC-AGCTG-TCAC--ACCCAGGCTCACGTTCACCAGCCTCAGCAGTCAgaccttcttccttcctcccttg-gAGGAAGTGAATAGAAGGGCAGAGCTGAAAGCAGGAACT--CTGT--CTCGATCTTGCTAAAGGGGTAGAAGTTCCTAATTCCTGGACTTGCTGGACCatagggaggaggagaaaaggatgTCTAGTACTTATTTCCTTGCATTTCAGCTACACTGAAGGTAGTTAGCACGGTGCATAAATGAGCCCCCGGGGACAG-TATTTCACGTTGTGAAC-------CCACAGCT--CGGGCGTTGT---TCTT--ACTGCGTCTCACAAGCTGTGCTAAATGCCTTATGGATATTTAATTCTGACCA------CCTGTGACGTAGGTACTGTAATAATCATACTAGcatcacagatggggaaactgagacacagaaaggt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82683546 487 + 85787240 ------------------------CCTCAAC-------------------------CCCCATAGCCTGAGTG------------------------------------GAGGAGAGAATG-GCGTGGCCTGCAGGGGAAG-----GACAGAGAGACAGTGCC-AGCTG-TCAC--ACCCAGGCTCACGTTCACCAGCCTCAGCAGTCAGACCTTCTTCCTCCCTCCCTTG-GAGGAAGTGAATAGAAGGGCAGAGCTGAGAGCAGGAACT--CTGT--CTTGATCTTGCTAAAGGGGTAGAAGTTCCTAATTCCTGGACTTGCTGGACCATAGGGAGGAGGAGAAAATGATGTCTAGTACTTATTTCCTTGCATTTCAGCTACACTGAAGGTAGTTAGCACGGTGCATAGATGAGCCCCCGGGGACAG-TATTTCACGTCGTGAAC------ACCACAGCT--TGGGCGTTGT---Tctt--actgcgcctcacaagctgtgctaaatgccttatggatatttaattctgacca------cctgagacgtaggtactgtaataatcatactagtatcatggatggggaaactgagacacagaaaggt i chlSab2.chr25 C 0 C 0 s mm10.chr1 178890704 482 + 195471971 ------------------------ACTCAG--------------------------ACTCAGATCCGCAGTGCTAGATCCCTTTCTCAGACAGCCATAGTACTCCAGAGAGGAAGGCAGG-GCACAGTC--CAGGGGAAGAAGGAGACAGAAGGACCCCACTGAGCTGCTCAT--GCCTGGCTCCATGTTTACCGGGCT-------------------CCCCCTCTC----------ATGACTAGAGAAGAAGAAGGAAGCACAGGATCTCCCTCT--CTCGACCTTTCAAAGGGACCAGAAG---CTAATTTATGAAC-TGCTGGATCAGAGGACGAAGGAGAAAATTGTTTCCAGTACTTATTTTCTGGCTTTTCGGCTACACGACAGGCAGTTAGCATGGCGTATAAACTAGCGCTCTGTGAGGGTTGCTTCTCAATGAGAGC------A----------TAGAGATAATACCCctt--actaagctgcccaggctattctaaatactttatggatatctactcgtga----------cggtgac-------ttgtaaccggcaatcttatggcaaagattgggaaactgaggcacagaaaggt i mm10.chr1 I 2 C 0 s canFam3.chr7 36474147 536 + 80974532 CACAAACCAGGATGCCAGGACTCCCACCAATGGGCAGAATCAGGCTGACAGGGCAGCCATGTGGCTTAAGGG------------------------------------CAGGAGAGCGTGTGAGAGACTTGTGGGGAGGG----AGACAGATGGACAGTGTT-GGGCT-TTACTTGCCCAGGGTCACATTTACCAGCCTCAGTGATCAGAC--TCTTTCTTGTGCTGTGGAAAAAAAGTGAATGAAAGGGCAGAAGGAAAGGTGGGAACT--TTTTCCCCTGATCTTTTGAAGGGGATCGAGGTTCCTAATTTGTGGACTTGATGGGTCATGGAGAGAAGCAGCACCTAGCTTCCAGTACTTATTCTCTGGTTTTCCCACAACATTCTGGGTAGTTAGCATGGTGCCTGAATGAGTTCTAAATGAGGCTTATTTCATAATGTGAGTGTAATGATGATAGCTCACAGTCATTGT---TCTCTGACTGTGCTTCCACAACAGTTCC-CACACTTGGTGAGCACTTAATTCTGCCGACACAGCCTTATGACCAAGGCACTATTGTGATCATATTCGTA----------------TGGGATACAGA----- i canFam3.chr7 C 0 C 0 e calJac3.chr19 14393748 931 - 49578535 M a score=791650.000000 s hg38.chr1_KI270759v1_alt 347892 268 + 425601 tgagtatcttgtccaagttcacacagctaataggcaacagggcc---TCACTGCCTCCCAGTTTATCACCCCCCACCGAGTACAGTTTCTGGAATATT----GTGCTCGGTCAACATTTGTTGCAATAACAAGTGGGGTACAACAGAGGATCAAACATACCAGCAAAGCTTGCATATGTGTAGTTGATTATAAGTAAAAGCACAGTctgggca-----cagtggttcacacctataatctcagcactttggaaggcctaggcaggaggatcacttgagcc s panTro4.chr1 225103611 268 + 228333871 tgagtatcttgtccaagttcacacagctaataggcaacagggcc---TCACTGCCTCCCAGTTTATCACCCCCCACCGAGTACAGTTTCTGGAATATT----GTGCTCGGTCAACATTTGTTGCAATAACAAGTGGGGTACAACAGAGGATCAAACATACCAGCAAAGCTTGCATATGTGTAGTTGATTATAAGTAAAAGCACAggctgggca-----cagtggctcacacctataatctcagcactttggaaggcctaagcaggaggatcacttgagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226477507 270 - 229942017 tgagtatcttgtccaagttcacacagctaataggcaacagggcc---TCACTGCCTCCCAGCTTATCA-CCTCCACCGGGTACAGTTTTTGGAATATTGT-GGTGCTCGGTCAACATTTGTTGCAATAATAAGTGGGGTACAACAGAGGATCAGACATACCAGCAAAGCTTGCATATGTGTAGTTGATTATAAGTAAAAGCACAggctgggca-----cagtggctcatacctataatctgagcattttggaaggcctaggcaggaggatcacttgagcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140363047 259 - 143122389 tgagtatcttgtccaagttcacacagctaataggcaacagggcc---TCACTGCCTCCCAGCTtatca-ccctcaccgagtacagtttctggaatattgt-ggtgctcggtcaacatttgttgcaatg-----------aCAACAGAGGATCAGACATAGCAGCAAAGCTTGCATATGTGTAGTTGATTATAAGTGAAAGCACAggctgggca-----cagtggctcacacctataatctcagcaccttggaaggcctaggcaggggggtcacttgagcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17068260 270 - 229590362 tgagtatcttgtccaagttcacacagctaataggcaacagggcc---TCATTGCCTCCCAGCTTATCA-CCCCCACGGAGTACAGTTTCCGGAATATTGT-GGTGCTCGGTCAACATTTGTTGCAATAACAAATGGGGTACAACAGAAGATCAAACATACCAGCAAAGCTTGCACATGTGTAGTTGATTATAAGTAAAAGCACAggccgggca-----cagtggctcacacctgtaatctgagcactttggaaggcctaggcaggaggatcacttgagcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223832447 270 - 227556264 tgagtatcttgtccaagttcacacagctaataggcaacagggcc---TCACTGCCTCCCAGCTTATCA-CCTCCACCGAGTACAGTTTCCGGAATATTGT-GGTGCTCGGTCAACATCTGTTGCAATAACAAATGGGGTACAACAGAAGATCAAACATACCAGCAAAGCTTGCACATGTGTAGTTGATTATAAGTAAAAGCACAggccaggca-----cagtggctcacacctgtaatctgagcactttggaaggcctaggcaggaggatcacttgagcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16882609 258 - 220367699 tGAGTATCTtctccaagttcacacagctaataGGCAACAGGGCC---TCACTGCCTCCCAGCTTATCA-CCCCCACCGAGTACAGTTTCTGGAATATTGT-GGTGCTCAGTCAACATTTGTTGCAATAACAAATGGGGTACAACAGAAGATCAAACATACCTGCAAAGCTTGCACATGTGTAGTTGATTATAAGTAAaagcacaggccaggca-----cagtggc------------tctgagcattttggaaggcctaggcaggaggatcacttgagcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82684033 270 + 85787240 tgagtatcttgtccaagttcacacagctaataggcaacagggcc---tcactgcctcccagcttatca-cccccaccaagtacagtttctggaatattgt-ggtgctcggtcaacatttgttgcaataacaaatGGGGTACAACAGAAGATCAAACATACCTGCAAAGCTTGCACATGTGTAGTTGATTATAAGTAAAAGCACAggccaggca-----cagtggctcacacctgtagtctgagcactttggaaggcctaggcaggaggatcacttgagcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14394696 253 - 49578535 TGAATATCTTGTTCAGGTT--CACAGCCAACAGGCAGCAGGGCC---TCCCTGCCTCCCAGCTTGTCA--CCCCACTGAGTACAGT---------------GGTGCTCGGGCAACACTTGTTGTGGTAACAAATGGGGTAGGACAGAGAATCAGACATACCAGCAAAGCTTGCATATGTGTCGTTGATTGTAAGTAAAAGCACAggctgggca-----cagtggctcacacctgtaatctcagcactttgggacgcctaggcaggaggatcacttgagcc i calJac3.chr19 M 931 C 0 s mm10.chr1 178891186 242 + 195471971 tgagt-tctagttcaagttcacacagctgttacaaatcagaactatgtgtctgtctcccagtgtgttg-ctactgcctaATATGATGCCTAGAAGGTTGTCAATGTCCAGTGAACACTTGT-----CAATGGATATGAAGCCTCCGTGGACCATATGGTCCA-TAAAGCCTGAATATAGAGGCTT--------GTGAGAGTTTAGACTGGAGAGGGGCCAGAGAGTCCAGTGTGTAATC----------------------CAGGTGGCTTCCTTGACCT i mm10.chr1 C 0 I 368 s canFam3.chr7 36474683 186 + 80974532 -----------------------TAGCT---------------C---CCCCCGACCCACGG--TACCA-CCACTTCCTCACACCAGGTCCAGAATGCCAT-CATGTTCCATCAGTGTTTGTTGGGATAGCAGATGAGCCAAGACCCTGGCTCAGATGTATCTGCAGAGCCTGAGCATGTGTGGTGGGTTGGAAGTGAA-----------GCCA-----TAGT---------------------------------TTCAAGCAGGGGGACCAGCTGTGGC i canFam3.chr7 C 0 C 0 a score=745439.000000 s hg38.chr1_KI270759v1_alt 348160 277 + 425601 caggagtttgagaccagtctgaacaacataaggagacctcgtctccac--aaaaaaaaattaaaacactagctgggcatggtggctcatacctgtagtccaagctacttgggaggctgaggtggaaggatcgcttgaacccaggaggttgaggctgcagtaagctatgatcgtatcactgcactccagcctggacaacagagcaagaccctgcctcTAAG----TGAGTGAATGAATG----------AAGGCACAGACCCGAGGGGCAGGGCTGATGGTAGCCAATTCATAC s panTro4.chr1 225103879 277 + 228333871 caggagtttgagaccagtctgaacaacataaggagacctcgtctccac--aaaaaaaaattaaaacactagctgggcatggtggctcatacctgtagtccaagctacttgggaggctgaggtggaaggatcgcttgaacccaggaggttgaggctgcagtaagctatgatcgtatcactgcactccagcctggacaacagagcaagaccctgcctcTAAG----TGAGTGAATGAATG----------AAGGCACAGACCCGAGGGGCAGGGCTGATGGTAGCCAATTCATAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226477777 281 - 229942017 caggagtttgagaccagtctgaacaacataaggagacctcgtctccac--aaaataaaattaaaaaactagctgggcatggtggctcatacctgtagtccaagctacttgggaggctgaggtggaaggatcgcttgaacccaggaggttgaggctgcagcaagctatgatcatatcactgcactccatcctggacaacagagcaagaccctgcctcTAAGtgaatgaatgaatgaatg----------aaGGCACAGACCCAAGGGGTAGGGCTGATGGTAGCCAATTCATAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140363306 291 - 143122389 caggagtttgagaccagtctgaacaacataaggagacctcatctccac--aaaaaaaaattaaaaaactagctgggcatggtggctcatacctgtagtccaagctacttgggaggctgaggtggaaggattgcttgaacccaggaggttgaggctgcagtaagctatgatcacgtcactgcactccagcctggacaacagagcaagatcctgcctcTAAGtgaatgaatgaatgaatgaatgaatgaaAAGGCACAGACCCGAGGGGTAGGGCTGATGGTAGCCAATTCATAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17068530 278 - 229590362 caggagtttgagaccagtctgagcaacataaggaggcctcatctctac-aaaaaaaaaatttaaaaactagctgggcatggtggctcacacctgtagtccaagctacttgggaagctgaggtggaaggatcactcgaacccaggaggttgaggttgcagtaagctatgatcatgtcactgcactccagcctggacaacagagcaagaccctgtctcTAAG----TGAATGAATGAATG----------AATGCACCGACCCGAGGGGCAGGGCTGACGGTAGCCAATTCATAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223832717 278 - 227556264 caggagtttgagaccagtctgagcaacataaggaggcctcatctctac-aaaaaaaaaatttaaaaactagctgggcatggtggctcacacctgtagtccaagctacttgggaagctgaggtggaaggatcactcgaacccaggaggttgaggttgcagtaagctatgatcatgtcactgcactccagcctggacaacagagcaagaccctgcctcTAAG----TGAATGAATGAATG----------AATGCACCGACCCGAGGGGCAGGGCTGACGGTAGCCAATTCATAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16882867 280 - 220367699 caggagttggagaccagtctgagcaacataaggagacctcatctccac---aaaaaaaatttaaaaactagctgggcatggtggctcacacctgtagtccaagctacttgggaggctgaggtggaaggatcgctcgaacccaggaggttgaggctgcagtaagctatgatcatgtcactgcactccagcctggacaacagagcaagaccctgcctctaagtgaatgaatgaatgaatg----------aatgcaccgACCCGAGGGGCAGGGCTGACGGTAGCCAATTCATAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82684303 283 + 85787240 caggagtttgagaccagtctgagcaacataaggaggcctcatctccacaaaaaaaaaaaattaaaaactagctgggcatggtggctcacacctgtagtccaagctacttgggaggctgagatggaaggatcgctcgaacccagaaggttgaggctgcagtaagctatgatcatgtcactgcactccagcctggacaacagagcaacaccctgcctctaaGtgaatgaatgaatgaatg----------aatgCACCGACCCAAGGGGTAGGGCTGATGGTAGCCAATTCATAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14394949 274 - 49578535 caggagttag-gaccagcctgagcaacataaggaagcctcgtctccac---aaaaaaattttcaaaactagccgggcatggtggctttcacctgtggtccaagctacatgggaggctgaggtggaaggatcacttgaacccaagaggtggagactgcagtaagctacggtcatgtcattgtactccagcctgggcaacagagc-agcccttgtcACTAAG----TGGAAGAGTGGATG----------AATGCACAGATCCCAGGGGTAGGGCTGATGGCAGCTAATTCTTAC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36474869 40 + 80974532 --------------------------------------------------------------------CAGCTGTGCATG------------------------------------------------------------CAGG-----------------------------GTCAGTGTCC---------------------AGACCCCCACTTTA--------------------------------------------------------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178891428 368 + 195471971 I a score=68181.000000 s hg38.chr1_KI270759v1_alt 348437 47 + 425601 ATTCAGGTCGGTCTCCTGGTCTCACCTGTTTCTGTGATTGCTAAGCC s panTro4.chr1 225104156 47 + 228333871 ATTCAGGTCAGTCTTCTGGTCTCACCTGTTTCTGTGATTGCTAAGCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226478058 47 - 229942017 ATTCAGGTCAGCCTCCTGGTCTCACTTGTTTCTGTGATTGCTAAGCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140363597 47 - 143122389 ATTCAGGTCAGTTTTCTGGTCTCACCTGTTTCTGTGATTGCTAAGCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17068808 28 - 229590362 AT-------------------TCACCTGTTTCTGTGATTGCTAAGCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223832995 28 - 227556264 AT-------------------TCACCTGTTTCTGTGATTGCTAAGCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16883147 28 - 220367699 AT-------------------TCACCTGTTTCTGTGATTGCTAAGCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82684586 43 + 85787240 GTTCAGGTC----TCCTGGTCTCACCTGTTTCTGTGATTGCTAAGCC i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36474909 16 + 80974532 -------------------------------CTGAGATGGCTACCCC i canFam3.chr7 C 0 I 4 e mm10.chr1 178891428 368 + 195471971 I e calJac3.chr19 14395223 0 - 49578535 C a score=347608.000000 s hg38.chr1_KI270759v1_alt 348484 127 + 425601 AGGCTGATGGCTAGATACCCATGGTAATGAAGAATGTAAAATACGAAAGGTAAAAAAGGGAAATAAATCTTCCTTTCAGGACCCAAGCTACTTATCAGGGCTAAACAAAAAATACCAAGTAAGAATG s panTro4.chr1 225104203 127 + 228333871 AGGCTGATGGCTAGATACCCATGGCAATGAAGAATGTGAAATACAAAAGGTAGAAAAGGGAAATAAATCTTCTTTTCAGGACCCAAGCTACTTATCAGGGCTAAATAAAAAATACCAAGTAAGAATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226478105 127 - 229942017 AGGCTGATGGCTAGATACCCATGGCAATGAAGAATGTGAAATATGAAAGGTAAAAAAGAGAAATAAATCTTCCTTTCAGGACCCAAGGTACTTATCAGGGCTAAATCAAAAATACCAAGTAAGAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140363644 127 - 143122389 AGGCTGATGGCTAGATACCCATGGCAATGAAGAATGTGAAATACGAAAGGTAAAAAAGGGAAATAAATCTTCCTTTCAGGACCCAAGCTACTTATCAGGGCTAAATCAAAAATACCAAGTAAGAATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17068836 127 - 229590362 AGGCCGATGGCTAGATACCCATGGCAATGAAGAATGTCAAATACAAAAGGTAAAAAAGGGAAAGAAATCTTCCTTTCAGGACCCAAGCTACTTGTCAGGGCTAAATCAAAAATACCAGGTAAGAATT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223833023 127 - 227556264 AGGCCGATGGCTAGATACCCATGGCAATGAAGAATGTCAAATACAAAAGGTAAAAAAGGGAAAGAAATCTTCCTTTCAGGACCCAAGCTACTTGTCAGGGCTAAATCAAAAATACCAGGTAAGAATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16883175 127 - 220367699 AGGCCGATGGCTAGATACCCATGGCAATGAAGAATGTCAAATACAAAAGgtaaaaaagggaaggaaatctTCCTTTCAGGACCCAAGCTACTTGTCAGGGCTAAATCAAAAATACCAGGTAAGAATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82684629 127 + 85787240 AGGCCGATGGCTAGATAACCATGGCAATGAAAAATGTCAAATACAAAAGGTAAAAAAAGGAAAGAAATCTTCCTTTCAGGACCCAAGCTACTTATCAGGGCTAAATCAAAAATACCAGGTAAGAATG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178891796 122 + 195471971 AGACTGGTGGCTAGGTGCCAGTGGTGAAGTGGACAGTGAAACAAAGAAG---AAAATGGAAAAGAAGTCCCTCATTCCAGACCAAAGTCACAAACCAGGGCTCAATC--AAATGTCACATGAAAATG i mm10.chr1 I 368 I 335 s canFam3.chr7 36474929 99 + 80974532 GGGCTGACTCCTGGGGACTCTTGGCAGTGGGCAAAGTGGAACGGGGAGGCTAGAGGAGGGAAGGGA--------------ACCTACGCCACTTAAC----CACAATCAGAAATACCA---------- i canFam3.chr7 I 4 C 0 e calJac3.chr19 14395223 0 - 49578535 C a score=531792.000000 s hg38.chr1_KI270759v1_alt 348611 261 + 425601 TAATGATGAGGGGTGGGG---AGGGGG--CAAAAAATAAAATTAAAAAGAATGTAACAAGCAACGAGACGCTCCTGACTTTGAACCTGTGTGCAGGGCTCCGGGTAGATTAG--------AAGGCAT--CCTAACCTCAGTAAATGGCTGTCAGTGGGGCCTGACAGTCTGGGTCCCGTGTTCTGG---GCACC-ACCAATGGAGGGTATCCTCT-CA--GAAAGCTTCACCCTATTTCATGAGCCTT-TAATAAAAT---------ATAGCTATAATCTTTC--------TCGTGAAAGA s panTro4.chr1 225104330 263 + 228333871 TAATGATGAGGGGTGGGG---AGGGGGGGCAAAAAATAAAATTAAAAAGAATGTAACAAGCAATGAGACGCTCCTGACTTTGAACCTGTGTGCAGGGCTCCAGGTAGATTAG--------AAGGCAT--CCTAACCTCAGTAAATGGCTGTCAGTGGGGCCTGACAGTCTGGGTCCCATGTTCTGG---GCACC-ACCAATGGAGAGTATCCTCT-CA--GAAAGCTTCACCCTATTTCATGAGCCTT-TAATAAAAT---------ATGTCTATAATCTTTC--------TCGTGAAAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226478232 265 - 229942017 TAACGATGAGGGGTGGGG---AAGGGGGGCAAAAAATAAAATTAAAAAGAATGTAACAGCCAATGAGACACTCCTGACTTTGAACCTGTGTGCAGGGCTCCAGGTAGATTAG--------AAGGCAT--CCTAACGTCAGTAAATGGCTGTCAGTGGGGCCTGACAGTCTGGGTCCCATGTTCTGG---GCACC-ACCAATGGAGGGTGTCCTCT-CATGAAAAGGCTTAGCCTATTTCATGAGCCTT-TAAAAAAAT---------ATATCTATAATCTTTC--------TCGTGAAAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140363771 273 - 143122389 TAATGATGAGGGGCGGGGGGAAGGGGGGGCAAAAAATAAAATTAAAAAGAATGTAACAACCAATGAGACACTCCTGACTTTGAACCTGTGTGCAGGGCTCCAGGTAGGTTAG--------AAGGCGT--CCTAACCTCAGTAAATGGCTGTCAGTGGGGCCTGACAGTCTGGGTCCCATGTTCTGG---GCACC-ACCCATGGAGAGTATCCTCT-CATGAAAAGGCTCAGCCTATTTCATGAGCCTT-AAAAAAAAC------------TCTATAATCTTTCTCGTGAAATCGTGAAAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17068963 257 - 229590362 TAATGAGGAGGGGCGGGG---AGAGGGGGCAAAAAATAAAATCAAAAAGAATGTAACAACCAACGAGACACTCCTGACTTTGAAC--GTGTGCGGGGCTCCAGGTAGATGAG--------AAGGCGT--CCTAACCTCAGGAAGTGGCTGTCAGTGGGGCCTGACAGTCTGG----------CTGG---ACACCTGCCAATGGAAGGTGTCCTCT-CA--GAAAGTCTCAGCCTATTTCATGAGCCTT-AAAAAAAAA----AAAAAATCTCTATAATCTTTC--------TCGTGAAAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223833150 267 - 227556264 TAATGAGGAGGGGCGGGG---AGAGGGGGCAAAAAATAAAATCAAAAAGAATGTAACAACCAACGAGACACTCCTGACTTTGAAC--GTGTGCGGGGCTCCAGGTAGATGAG--------AAGGCGT--CCTAACCTCAGGAAGTGGCTGTCAGTGGGGCCTGACAGTCTGGCTCCCATGTTCTGG---GTACC-GCCAATGGAAGGTGTCCTCT-CA--GAAAGTCTCAGCCTATTTCATGAGCCTTAAAAAAAAAA----AAAAAATCTCTATAATCTTTC--------TCGTGAAAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16883302 266 - 220367699 TAATGAGGAGGGGCGGAG---AGAgggggcaaaaaataaaattaaaaagaatgtaaCAACCAACGAGACGCTCCTGACTTTGAAC--ATGTGCGGGGCTCCAGGTAGATGAG--------AAGGCGT--CCTAACCTCAGGAAGTGGCTGTCAGTGGGGCCTGACAGTCTGGCTCCCATGTTCTGG---GTACC-GCCAATGGAGGGTGTCCTCT-CA--GAAAGTCTCAGCCTATTTAatgagcctt-aaaaaaaaa----aaaaaaactctataatCTTTC--------TCGTGAAAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82684756 269 + 85787240 TAGTGATGGGGGGCAGGG---AGAGGGGGCAAAAAATAAAATAAAAAAGAATGTAACAACCAATGAGATGCTCCTGACTTTGAAC--ATGTGC-AGGCTCCAGGTAGAGTAG--------AAGGCGT--CCTAACCTCAGGAAGTGGCTGTCAGTGGGGCCTGACAGTCTGGGTCCCATGTTCTGG---GTACC-GCCAATGGAGGGTGTCCTCT-CA--GAAAGTCTCAGCCTATTTCATGAGCCTT-aaaaaaaaaaaacaaaaaaaCTCTATAATCTTTC--------TTGTGAAAGA i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36475028 197 + 80974532 -------------------------------------------GAAAAGAATGTTGGAATGAATGAGATCCTCCTCTATCAATATCTGTGTGCAGGACCCAGGATAGAAGATCGGAGAACAGGGCTTGGGTTGGCCTCATTGAATGGTGCTCAATGAAACT---------------CATATGCTGGCCTGCTCT-ACCT-----GGTTGATCTCTGCA--AAATGTCATGAGGCTTTTTGTCTTTCTT-A-----------------ATTTCTGCAATCCT-------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178891918 335 + 195471971 I e calJac3.chr19 14395223 0 - 49578535 C a score=1535953.000000 s hg38.chr1_KI270759v1_alt 348872 578 + 425601 GCCTGACAGTTCATGGAGCCACTTCCCACGCCGCACTGATGGG--------------------------------AGAAACTGCAGGACTCCACCAGGCTTTCTCTGGCT--------CCAGGACCCCCACGAAGGCCTCCTGATTTATCTGGAGCAGCTCCTGCATAAGAAGGGTGACCGTTTCCCACAGTGGAGAACCAGACACTGGGCACAGCCCACTTGATAAGAC---AGCTT----CCATCTCCCGCCCCTCCTGGGT---------------ATGCA--AAGGCAT------TCCTGAGTGAATAGGTTC--AGGTC----AGAGCAGGAGAGGTTATCACCCAGGCTGTGCCTTGAAGCTTTGCTGAGTACAAGAAAGGTAAGGAAG--AGATA----AGCAAGAGGTGAGAATGACGGCAGG--GCT----GGCAAG-TGAGATCACGAGCTTTTCCTCAAACATCTGGCTAAGAATAGAAGCTTTGGGAAATTCCACAACTGGCAGATTAAGGTGATCAGCCTCTCAGCTGGAATTTGTGAAGTTTCTTCAGACTGAGCTCCCAGAGAAGTAT-GTGTGGTGGAATCGCTGTGCTTTCTAAA-GAGATG----GA--TTGCAACCTGCGCC-GTTGAGCTAGTGCTGAGCTGAGGCCCGGT-GAGAT s panTro4.chr1 225104593 578 + 228333871 GCCTGAAAGTTCATGGAGCCACTTCCCATGCCGCACTGATGGG--------------------------------AGAAACTGCAGGACTCCACCAGGCTTTCTCCGGCT--------CCAGGATCCCCATGAAGGCCTCCTGATTTATCTGGGGCAGCTCCTGCATAAGAAGGGTGACCGTTTCCCACAGTGGAGAACCAGACACTGGGCACAGCCCACTTGATAAGAC---AGCTT----CCATCTCCCGCCCCTCCTGGGT---------------ATGCA--GAGGCAT------TCCTGAGTGAATAGGTTC--AGGTC----AGAGCAGGAGAGGTTATCACCCAGGCTGTGCCTTGAAGCTTTGCTGAGTACAAGAAAGGTAAGGAAG--AGATA----AGTGAGAGGTGAGAATGACGGCAGG--GCT----GGCAAG-TGAGATCACGAGCTTTTCCTCAAACATCTGGCTAAGAATAGAAGCTTTGGGAaattccacaactggcagattaaggtgatcagcctctcagctggaatttgtgaagtttcttcagaccgagctcccagagAAGCAT-GTGTGGTGGAATCGCTGTGCTTTCTAAA-GAGATG----GA--TTGCAACCTGCGCC-GTTGAGCTAGTGCTGAGCTGAGGCCCGGC-GAGAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226478497 578 - 229942017 GCCTGAAAGTTCATGGAGCCACTTCCCAAGCCACACTGATGGG--------------------------------AGAAACTGAAGGACCCCACCAGGCTTTCTCTGGCT--------CCAGGACCCCCACGAAGGCCTCCTGATTTATCTGGGGGAGCTCCTGCATAAGAAGCGTGACCATTTCCCACAGTGGAGAACCAGACACTGGGCACAGCCTACTTGATAAGAC---AGCTT----CCATCTCCCGCCCCTCCTGGGT---------------GTGCA--GAGGCAT------TCCTGAGTGAATAGGTTC--AGGTC----AGAGCAGGAGAGGTTATCACCCAGGCTGTGCCTTGAAGCTTTGCTGAGTACAAGAAAGCTAAGGAAG--AGATA----AGCAAGAGGTGAGAATGATGGCAGA--GCT----GGCAAG-TGAGATCATGAGTTTTTCCTCAAACATCTGGCTAAGAATAGAAGCTTTGGGAAATTCCACAATTGGCAGATTAAGATGATCAACCTCTCAGCTGGAATTTGTGAAGTTTCTTCAGACTGAGCTCCCAGAGAAGTAT-GTGTAGTGGAATCGCTGTACTTTCTAAA-GAGATG----GA--TTGCAACCTGTGCT-GTTGAGTTAGTGCTGAGCAGGGGCCAGGC-GACAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140364044 576 - 143122389 GCCTGAAAGTTCATGGAGCCACTTCCCACGCCGCACTGATGGG--------------------------------AGAAACTGAGGGACACCACCAGGCTTTCTCTGGCT--------CCAGGACCCCCACGAAGGCCTCCTGATTTATCTGGGGCAGCTCCTGCATGAGAAGCATGACCGTTTCCCACAGTGGAGAACCAGACGCTGGGCACAGCCCACTTGATAAGAC---AGCTT----CCATCTCCCGCCCCTCCTGGGT---------------GTGCA--GAGGCAT------TCCTGAGTGAATAGGTTC--AGGTC----AGAGCAGGAGAGGTTATCGCCCAAGCTGTGCCTTGAAGCTTTGCTGAGTACAAGAAAGGTAAGGAAG--AGATA--------AGAGGTGAGAATGATGGCAGG--GCT----GGCAAG-TGAGATCATGAGCTTTTCCTCAAACATCTGGCTAAGAATAGCAGCTTTGGGAAATTCCACAATTGGCAGATTAAGATGATCAACCTCTCAGCTGGAATTTGTGAAGTTTCTTCAGACTGAGCTCGCAGAGAAGTAT-GTGTAGTGGAATCGCTGTGCTTTCTAAA-GAGATG----GATTTTGCAACCTGCACT-GCTGAGCTAGTGCTGAGCTGAGGCCAGGC-GTGAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17069220 608 - 229590362 GGCTGACAGTTCATGGAGCCCCTTCCCACGCCGCACTGATGGGAGAAACGCCCCTTCCCACGCCGCACTGATGGCAGAAACGGCCGGACTCCACCAGGCTCTCTCTGGCT--------CCAGGACCCCCACGAAGGCCTCCTGATCTATCTGGGGCAGCTCCTGCAGGAGAAGCGCGACCATTTCCCACAGTGGAGAAGCAGACACTGGGCACAGCCCGC-TGATAAGAC---AGCTT----CCATCTCCCGCCCCTCCGGGGT---------------ATGCA--GCTGCCT------TCCTGAGTGAATAGGTTC--AGGTC----TGAGCGGGAGAGGTTATCACCCAGGCTGTGCCTTGAAGCTTTGCTGAGTACGAGAAAGGTAGGGAAG--AGATA----AGCGAGAGGTGAGAATGATGGCAGG--GCT----GGCGAG-TGAGATCATGAGCTTTTCCTCAAACATCTGGCTAAGAATAGAAGCTTTGGGAAATTCCACAATTGGCAGA-TAAGATGATCAACCTCTCAGCTGGAATTTGGGAAGTTTCTTCAGACTGAGCTCCCAGAGAAGTAC-GTGTGGTGGAATCGCTGTGCTTTCTAAA-GAGACG----GA--TTGCAGCCTGCGCT-GCAGAGCTAGTGCTGAGCTGAGGCCAGGC-GACAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223833417 608 - 227556264 GGCTGACAGTTCATGGAGCCCCTTCCCACGCCGCACTGATGGGAGAAACGCCCCTTCCCACGCCGCACTGATGGCAGAAACGGCCAGACTCCACCAGGCTCTCTCTGGCT--------CCAGGACCCCCACGAAGGCCTCCTGATCTATCTGGGGCAGCTCCTGCAGGAGAAGCGCGACCATTTCCCACAGTGGAGAAGCGGACACTGGGCACAGCCCGC-TGATAAGAC---AGCTT----CCATCTCCCGCCCCTCCGGGGT---------------ATGCA--GCCGCCT------TCCTGAGTGAATAGGTTC--AGGTC----GGAGCGGGAGAGGTTATCACCCAGGCTGTGCCTTGAAGCTTTGCTGAGTACGAGAAAGGTAGGGAAG--AGATA----AGCGAGAGGTGAGAATGATGGCAGG--GCT----GGCGAG-TGAGATCATGAGCTTTTCCTCAAACATCTGGCTAAGAATAGAAGCTTTGGGAAATTCCACAATTGGCAGA-TAAGATGATCAACCTCTCAGCTGGAATTTGGGAAGTTTCTTCAGACTGAGCTCCCAGAGAAGTAC-GTGTGGTGGAATCGCTGTGCTTTCTAAA-GAGACG----GA--TTGCAGCCTGCGCT-GCAGAGCTAGTGCTGAGCTGAGGCCAGGC-GACAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16883568 577 - 220367699 GGCTGACAGTTCATGGAGCCCCTTCCCACGCTGCACTCATGGG--------------------------------AGAAACGGCCGGACTCCACCAGGCTCTCTCTGGCT--------CCAGGACCCTCACGAAGGCCTCCTGATCTATCTGGGGCAGCTCCTGCAGGAGAAGCACAACCATTTCCCACAGTGGAGAAGCAGACACTGGGCACAGCCCAC-TGATAAGAC---AGCTT----CCATCTCCCGCCCCTCCGGGGT---------------ATGCA--GCCGCCT------TCCTGAGTGAATAGGTTC--AGGTC----GGAGCGGGAGAGGTTATCCCCCAGGCTGTGCCTTGAAGCTTTGCTGAGTACAAGAAAGGTAGGGAAG--AGATA----AGCGAGAGGTGAGAATGATGGCAGG--GCT----GGCGAGTTGAGATCATGAGCTTTTCCTCAAACATGTGGCTAAGAATAGAAGCTTTGGGAAATTCCACAATTGGCAGA-TAAGATGATCAACCTCTCAGCTGGAATTTGGGAAGTTTCTTCAGACTGAGCTCCCAGAGAAGTAC-GTGTGGTGGAATCGCTGTGCTTTCTAAA-GAGATG----GA--TTGCAGCCTGCGTG-GTGGAGCTAGTGCTGAGCTGGGGCCAGGC-GACAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82685025 561 + 85787240 GCCTGAAAGTTCATGGAGCCCCTTCCCACGCCGCACTGATGGG--------------------------------AGAAACTGCCGGACTCCACCAGGCTCTCTCTGGCT--------CTGGGACCCCCACGAAGGCCTCCTGATCTATCTGGGGCAGCTCCTGCAGGAGAAGCGCGACCATTTCCCACAGTGGAGAAGCAGACACTGGGCACAGCCCAC-TGATAAGAC---AGCTT----CCGTCTCCCGCCCCTCCGGGGT---------------ATGCA--GCGGCGT------TCCTGAGTGAATAGGTTC--AGGTC----GGAGCGGGAGAGGTTATCACCCAGGCTGTGCCTTGAAGCTTTGCTGAGTACAAGAAAGGTAGGGAAG--AGATA----AGCGAGAGGTGAGAATGATGGCAGG--GCT----GGTGGG-TGAGATCATGAGCTTTTCCTCAAACATCTGGCTAAGAATAGAAGCTTTGGGAAATTCCACAGTTGGCAGA-TAAGATGATCAACCTCTCAGCTGGAATTTGGGAAGCGTCTTCAGACTGAGCTCCCAGA----------------GAATCGCTGTGCTTTCTAAA-GAGACG----GA--TTGCAGCCTGCGCG-GTAGAGCTAGTGCTGAGCTGGGGCCAGGC-GACAT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178892253 572 + 195471971 TCCTGAGAGTCTGTGAAGCTATCTCACATCCC-----CATCAG--------------------------------CAATAAAGCCACATATCCCCATGGCACCTATG--------------------CCACACAGCTCTCCTACTTTGCCTGGG--AGCTCCAGCAAGAAAAGTGGGTCTGTTCCCCAAACCAGAGAGCTGGGTGCTGCCCACAATTGAC-AGATAGGACCATGGTTG----TGGGTTTTCTTCCCT----GGG---------------ATGCC--ACTGTCTCTGAGGTGTTGAGAGAGCAGGCTCCTAGGCCCCTATAAGTAGAAGAGGTTATCATCT--GCTGTGTCCTGAAGTTTGGCAGCATAGCCGCTTAGTAATGAAG--GGATACGCACGCAGGAGGTGCAGATGGTGCCAGG--GTTTTGCTGTGCC-TGCGGTAATGAGC--TTCCTCAAGCATCTAGCTGAGAGTGGAAACATTAGGAACTTCCC-------CAGA-TGAGACGATCAGTCTCACAACTGGAATTTGTCAACTTTCTTCACCCTGAGCTCCCAAAGAAGTGTGGTAGAGCAGGACAGCTGTGGTCTCTAAATGAGACACCGCCG--CCGCCACCTGGGCTGGCAGAGCCACACTCAAGGTGAGGCCAGGG-AACAG i mm10.chr1 I 335 C 0 s canFam3.chr7 36475225 575 + 80974532 GCCTGACAGTGCAT---------TCCACTGGCCTACTAGTGGG--------------------------------AAAAGCCGT-GGATTCTATGATGCTCTCTTAGGCTGTGGGCCCCAGGGTCCCCCACCTAGCCCCTCTGCCTTACC--GGTTGGCTCCAGTGGGAGAAGTGTGACTGTATCCC----------------TGCCGGGCATGGCCTTGCCAATGAGAC---AGTTTCTGGCCCTCTCTAGCTCCTAGGAGGTGGCAGTGTCTAGTAGGTGCATGGAGGCAT------TTCTGGGTGAAGAGATTC--CCGTC----AGAACAGGAGCAGTTATCACCCAGTCTATGTCTTGAAGTTTCATTGAGGACGAGAAAGGCAAGGAAGGTGGGGA----GGCCAGAGGGGAGAGTGACAGCAGGCTGTC----AGTGTA-CAGGATAATGAGC--TTTCTCAAATACCAGGCTGATGGGAGCAGCTGTGTGGATTTCCACAGCTGGTAAA-TAAGGTAGCCAATCCATCAGCTAGAATTTGGGAAGTTTTTCCAGGCTTGGCTCCCAAAGAACTAT------GTCAAATGCCTGTGGTTTCTAA--GTGCTG----AT--CTGCAACACGGGTT-GGGGCACTGATGCTGAGCGAGAGCCCTGCTGAGgt i canFam3.chr7 C 0 I 1113 e calJac3.chr19 14395223 0 - 49578535 C a score=508554.000000 s hg38.chr1_KI270759v1_alt 349450 204 + 425601 GGATTCTAGCACCCCTGCCACGGCTAACCTCACACACTCAGACGCTCTCCCTGAGC-TTTTCATTTCTCCATCAGCAAAATCTCAATCATTCTTACTCCTCGTCCACCTCAGAAACATATTGTAGGTTCCATGGAGACGATGTCTGTGGTAGAC---AAAGAGACGTGCTTCAAAGGCAGAAAGGTCACTGTTTTATCATCTTTCAGA s panTro4.chr1 225105171 204 + 228333871 GGATTCTAGCGCCCCTGCCATGGCTAACCTCACACACTCAGATGCTCTCCCTGAGC-TTTTCATTTCTCCATCAGCAAAATCTCAATCATTCTTACTCCTCGTCCACCTCAGAAACATATTGTAGGTTCCATGGAGACGATGTCTGCGGTAGAC---AAAGAGACGTGCTTCAAAGGCAGAAAGGTCACTGTTTTATCATCTTTCAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226479075 204 - 229942017 GGATTCTAGCGCCCCTGCCACGGCTAACCTCACACACTCAGACGCTCTCCCCGAGC-TTTTCATCTCTCCATCAGCAAAATCTCAATCATTCTTACTCCTCGTCCACCTCAGAAACATATTGTAGGTTCCATGGAGACGATGTCTGTGGTAGAC---AAAAAGACGTGCTTCAAAGGCAGAAAGGTCACTGTTTTATCATCTTTCAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140364620 204 - 143122389 GGATTTTAGCGCCCCTGCCACGGCTAACCTCACACACTCAGACGCTCTCCCCGAGC-TTTTCATTTCTCCATCAGCAAAATCACAATCATTCGTACTCCTTGTCCACCTCAGAAACATATTGTAGGTTCCATGGAGACGATGTCTGCGGTAGAC---AAAGAGACGTGCTTCAAAGGCACAAAGGTCACTGTTTTATCATCTTTCAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17069828 203 - 229590362 GGGTCCTAGGGTCCCTGCCACGGCTAACCTCACACACTCAGATGCCCTCCCCGAGC-TTTTCATTTCTCCATCAGCAAAATCCCAATCGTTCTTACTCCTTGTCCACCTCAGAAACATACTGTAGGTTCCATGG-GACGATGTCTGTGATAGAC---AGAGAGACCTGCTTCAAAGGCAGAAAAGTCACTGTTTTATCATCTTTCAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223834025 204 - 227556264 GGGTCCTAGGGCCCCTGCCACGGCTAACCTCACACACTCAGACGCCCTCCCCGAGC-TTTTCATTTCTCCATCAGCAAAATCCCAATCGTTCTTACTCCTTGTCCCCCTCAGAAACATACTGTAGGTTCCGTGGAGACGATGTCTGTGATAGAC---AGAGAGACCTGCTTCAAAGGCAGAAAAGTCACTGTTTTATCATCTTTCAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16884145 204 - 220367699 GGGTCCTAGTGCCCCTGCCACGGCTAACCTCACACACTCAGACACCCTCCCCGAGC-TTTTCATTTCTCCATCAGCAAAATCCCAATCGTCCTTACTCCTTGTCCACCTCAGAAACATACTGTAGGTTCCGTGGAGACGATGTCTGTGATAGAC---AGAGAGACCTGCTTCAAAGGCAGAAAGGTCACTGTTTTATCATCTTTCAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82685586 204 + 85787240 GGGTCCTAGCGCCCCTGCCACGGCTAACCTCACACACTCAGACGCCCTCCCCGAGC-TTCTCATTTCTCCATCAGCAAAATCCCAATCGTTCTTACTCCTTGTCCACCTCAGAAACATACTGTAGGTTCCATGGAGACAATGTCTGTGATAGAC---AGAGAGACCTGCTTCAAAGGCAGAAAGGTCACTGTTTTATCATCTTTCAGA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178892825 183 + 195471971 GGATGTCAGCACCACTTTTGGG-------------ACTCAGGGACTATTTCAGCCCATTTTCAACCTT--GTGATCAGGAT-----TCATTCTTGCCC----TCCACTTCTGAAACAAAAT-TAGATCCCATGGACAAAATGTCTGGGAGGCCCTTTGAGAACACACATTTCAAAGGTGAGAAGGCCAGGGTGTGAGTATATTCTAAA i mm10.chr1 C 0 I 294 e canFam3.chr7 36475800 1113 + 80974532 I e calJac3.chr19 14395223 0 - 49578535 C a score=49260.000000 s hg38.chr1_KI270759v1_alt 349654 21 + 425601 ATCGTGTAACCCACGTGGTTC s panTro4.chr1 225105375 21 + 228333871 ATCGTGTAACCCATGTGGTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226479279 21 - 229942017 ATCGTGTAACCCACATGATTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140364824 21 - 143122389 ATCATGTAACCCACATGATTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17070031 21 - 229590362 ATCGTGTAGCCCACGTGATTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223834229 21 - 227556264 ATCGTGTAGCCCACGTGATTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16884349 21 - 220367699 ATCGTGTAGCCCACGTGATTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82685790 21 + 85787240 ATCGTGTAGCCCACGTGATTC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178893008 294 + 195471971 I e canFam3.chr7 36475800 1113 + 80974532 I e calJac3.chr19 14395223 0 - 49578535 C a score=1942938.000000 s hg38.chr1_KI270759v1_alt 349675 784 + 425601 TGCCACCATCCTGTCTTCTGTGCATTCCTTGACTTTGAAAGTACGCATCC-----------------TTTCTTTTGACCAAGTAG---ATAATTACCGTCTATCGAAATGAACC-CTCATGCATTTATTCAATGAGAGTTTGTGTGCCTAACACACAGCATGGCTGCCTGATACAAATACTTGGTTTAAGAGAAT-----TCTACAGGCTCTGCACGAAAGTGAAGTCATGATGTAAGGAGGCAAAGGACT----------CTGCCCTCAAACAGTCCAATGGGCCTGAGAATGAGCCTGGGGTGGGGG---TTCGATGCTGCTGCACCCCCAGTTGTATCTGTGTATCCCAGTGACTGgggcgtgatttgaatatttaaagatactcctttttc-----atacggc------ctttaaatgcaagccgagtacttctgctgcacagccggaga-ggtggtatgtttttaatgctggagtaaaacttgtctgtgttggacttagtgagagaATGGTTTTCGTTC--AGAGATTGTCAAGGCCAACTTTG---ATATAAATTTCACTTTACATTTTACACCACACGTGATTCATAACATTTAACTCTGTCATCCATAGAACTCGGTGCTGTTCTGATCAGCAAGGTAGATTCTGGCCCAAAAGAACTGGTGGAGGAATTTAAGGAACTGGTTC-----TAAGCCTAATTGAGGTCACCAAACATACAGAGAAAATAATCTGAGAAATGTATAGCAGAAATCTAAGTTT---TCCATTTATTCATTTAC------------TCAAAAATA----------CCCTACAATA-----AATACCAGGAATATA----------ACAGATGATCTGCATTCTTGGGCAACT s panTro4.chr1 225105396 784 + 228333871 TGCCACCATCCTGTCTTCTGTGCATTCCTTGACTTTGAAAGTATGCATCT-----------------TTTCTTTTGGCCGAGTAG---ATAATTACCGTCTGTCGAAATGAACC-CTCATGCATTTATTCAATGAGAGTTTGTGTGCCTAACACACAGCATGGCTGCCTGATACAGATACTTGGTTTAAGAGAAT-----TCTACAGGCTCTGCGCGAAAGTGAAGTCATGATGTAAGGAGGCAAAGGACT----------CTGCCCTCAAACAGTCCAGTGGGCCTGAGAATGAGCCTGGGGTGGGGG---TCCGATGCTGCTGCACCCCCAGTTGTATGTGTGTATCCCAGTGACTGgggcgtgatttgaatatttaaagatactcctttttc-----atgcggc------ctttacatgcaagccgagtacttctgctgcacagccggaga-ggtggtatgtttttaatgctggagtaaaacttgtctgtgttggacttagtgagagaATGGTTTTCGTTC--AGAGATTGTCAAGGCCAACTTTG---ATATAAATTTCACTTTACATTTTACACCCCTCGTGACTCATAACATTTAACTCTGTCATCCATAGAACTCGGTGCTGTTCTGATCAGCAAGGTAGATTCTGGCCCAAAAGAACTGGTGGAGGAATTTAAGGAACTGGTTC-----TAAGCCTAACTGAGGTCACCAAACATACAGAGAAAATAATTTGAGAAATGTATAGCAGAAATCTAAGTTT---TCCATTTATTCATTTAC------------TCAAAAATA----------CCCTACAATA-----AATACCAGGAATATA----------ACAGATGATCTGCATTCTTGGGCAACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226479300 789 - 229942017 TGCCACCATCCTGTCTCCTGTGCATTCCTTGATTTTGAAAGTATGCATCT-----------------GTTCTTTTGACCAAGTAG---ATAATTACCGTCTATCGAAATGAACC-CTCATGCATTTATTCAATGAGAGTTTGTGTGCCTAACACACAGCATGGCTGCCTGATACAGATACTTGGTTTAAGAGAAT-----TCCACAGGCTCTGCACGAGAGTGAAGTCGTGATGTAAGGAGGCAGAGGACT----------CTGCCCTCAAACAGTCCAATGGGCCTGAGAATGAGCCTGGGGTAGGGG---TCCGATGCTGCTGCATCCGCAGTTGTATCTGTGTTTCCCAGTGACTGgggcgtgatttgaatatttaaagatactcctttttc-----atacggc------ctttaaatgcaagctgagtacttctgctgcacagccagcga-ggtggtatgtttctaatgctgaagtaaaacttgtctgtgttggacttagtgagagaatggtTTTCGTTC--AGAGATTGTCATGGCCAACTTTG---ATATACATTTCACTTTATATTTTACACCCCACGTGACTCATAACATTGAACTCTGTCATCCGTAGAACTCAGTGCTGTTCTGATCAGCAAGGTAGATTCTGGCCCAAAAGAACTGGTGGAGGAATTTAAGGAACTGGTTCTATTATAAGCCTAATTTAAGTCACCAAACATACAGAGAAAATAATTTGAGAAACGTATAGCAGAAATCTAAGTTT---TCCATTTATTCATTTAC------------TCAAAAATA----------CCCTACAATA-----AATACCAGGAATATA----------ACAGATGATCTGCATTCTTGGGCAACT i ponAbe2.chr1 C 0 I 28 s nomLeu3.chr5 140364845 779 - 143122389 TGCCACCATCCTATCTTCTGTGCATTCCTTGACTTTGAAAGTATGCATCT-----------------TTTCTTTTGACCAAGTGG---ATAATTACTGTCTATCGAAATGAACC-CTCATGCATTTATTCAATGAGAGTTTGTGTGCCTAACACACAGCGTGGCTGCCTGATACAGATATTTCGTTTAAGAGAAT-----TCTACAGGCTCTGCATGAAAGTGAAGTCATGATGTAAGAAGGCAAAGGACT----------CTGCCCTCGAACAGTCCAATGGGCCTGAGAATGAACCTGGGGTGGGGG---TCCGATGCTGCTGCATCCCCAGTTGTATCTGTGTATCCCAGTGACTGgggcgtgatttgaatatttaaagatactcctttttc-----atacagc------ctttaaatgcaagctgagtacttctgctgcacagccagaga-ggtggtatgttgttagtgctgaagtaaaacttgtctgtgttggacttagtgagagaATGGTTTTCGTTC--AGAGATTGTCAAGGCTAACTTTG---CTATAAATTTCACTTTACATTTTACACCCCATGTGACTCATAACATTTAACTCTGTCATCCATAGGACTCAGTGCTATTCTGGTCAGCAC--TGAGTTCTGGCCCAAAAGAACTGGTGGAGGAATTTAAGGAACTGGTTGTATTATAAGCCTAATTTAAGTCACCAAACATAC-GAGAAAATAATTTGAGAAATGTACAGCAGAAATCTAAGTTT---TCCACTTATTCATTTAC------------TCAAAAATA----------CCCTACAATA-----AATACCAGGAATATA----------ACAGATGATCTGCATTCTTG------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17070052 833 - 229590362 TGCCACCATCCTATCTTCTGTGCATTCTTTGACTTTGAAAGTATGGATCt----tttttttttttttttttttttAGCCAAGTGGATTATAATTACCATCTATTGAAATGAACC-CTCATGCATTTATTCAACAAGAGTTTGTGTGCCTAACACACAGCGTGGCTGCCTGATACAGATACTTGACTTAAGAGAAG-----TCTAAAGGCTCTGCACGGAAGTGAAGTCATGATGTAAGGAGGCAAAGGACT----------CTGCCCTCAAACAGTCCAGTGGGCCTGAGAATGAGTCAGGGGTGGCGGGGTTCTGATGCTGCTGCACCCCCAGTTGTATCTGTGTATCCCAGTGACTGCGgcgtgattcgaatatttaaagatactccttttcc-----atacggccgagtactttgaaagcaagccgagtacttgtggtatgcagttagaga-ggtgacatgtttttaatgctgaagtaaaacttgtctgtgttggacttagtgagagaatggttttcattcaaagagattgtcaaggccaactttg---atataAATTTCACTTTACATCTCACACCCCACGTGACTCGTAACACTGAACTCTGTCATCCATAGAACTCAGTGCTGTTCTCATCGGCAAGGTAGATTCTGGCCCCAAAGAACTGG-GGAGGAATTTCAGGAACTGGTTCTATGATAAGCCTCATTGAGGTCACCAAACATACAGAGAAAATACTCTGAGAAATGTATAGCAGAAATCTAAGTTT---TCCATTGATTCATTTac----tcattcattcaaaaatatgcattgggtccctacaata-----aacaccagggataga----------acagatgatctccattcttgggcaact i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223834250 832 - 227556264 TGCCACCATCCTATCTTCTGTGCATTCTTTGACTTTGAAAGTATGGAT-T----cttttttttttttttttttttagCCAAGTGGATTATAATTACCATCTATTGAAATGAACC-CTCATGCATTTATTCAACAAGAGTTTGTGTGCCTAACACACAGCGTGGCTGCCTGATACAGATACTTGACTTAAGAGAAT-----TCTAAAGGCTCTGCACGGAGGTGAAGTCATGATGTAAGGAGGCAAAGGACT----------CCGCCCTCAAACAGTCCAGTGGGCCTGAGAATGAGTCAGGGGTGGCGGGGTTCTGATGCTGCTGCACCCCCAGTTGTATCTGTGTATCCCAGTGACTGCGGCgtgattcgaatatttaaagatactccttttcc-----atacggccgagtactttgaaagcaagccgagtacttgtggtgtgcagttagaga-ggtgacatgtttttaatgctgaagtaaaacttgtctgtgttggacttagtgagagaatggttttcattcaaagagattgtcaaggccaactttg---atataaatttcactttacatCTCACACCCCACGTGACTCATAACACTTCACTCTGTCATCCATAGAACTCAGTGCTGTTCTCATCGGCAAGGTAGATTCTGGCCCCAAAGAACTGG-GGAGGAATTTCAGGAACTGGTTCTATGATAAGCCTCATTGAGGTCACCAAACATACAGAGAAAATACTCTGAGAAATGTATAGCAGAAATCTAAGTTT---TCCATTGATTCATTTAC----tcattcattcaaaaatatgcattgggtccctacaata-----aacaccagggataga----------acagatgatctccattcttgggcaact i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16884370 823 - 220367699 TGCCACCATCCTATCTTCTGTGCATT------CTTTGAAAgtatggat-------tctttttttttttttttttaagccaagtgGATTATAATTACCATCTATTGAAATGAACC-ctcatgcatttattcaacaagaGTTTGTGTGCCTAACACACAGCGTGGCTGCCTGATACAGATACTTGACTTAAGAGAAG-----TCTAAAGGCTCTGCACGAAAGTGAAGTCATGATGTAA-GAGGCAAAGGACT----------CCGCCCTCAAACAGTCCAGTGGGCCTGAGAATGAGTCAGGGGTGGCGGGGTTCTGATGCTGCTGCACCCCCAGTTGTATCTGTGTATCCCAGTGACTGCAGCATGATTCGAATATTTAAAGATACTCCTTTTCC-----ATACGGCCGAGTACTTTGAATGCAAGCTGAGTACTTGTGGTGTGCAGTTAGAGA-GGTGGCATGTTTTTAATGCTGAAGTAAAACTTGTCTGTGTTGGACTTAGTGAAAGAATGGTTTTCATTCAAAGAGATTGTCAAGGCCAACTCTG---ATATAAATTTCACTTTACATCTCACACCCCACGTGACTCGTAACACTTCACTCTGTCATCCGTAGAACTCAGTCCTGTTCTCATCAGCAAGGTAGATTCTGGCCCCAAAGAACTGG-GGAGGAATTTCAGGAACTGGTTCTACGATAAGCCTCATTGAGGTCACCAAACATACAGAGAAAATACTCTGAGAAATGTATAGCAGAAATCTAAGTTT---TCCAttgattcatttac----tcattcattcaaaaatatgcaTTGGGTCCCTACAATA-----AACACCAGGGATAGA----------ACGGATGATCTCCATTCTTGGGCAACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82685811 834 + 85787240 TGCCACCATCCTATCTTCTGTGCATTCCTTGACTTTGAAAGTATGCATCTTCTGttttttttttttttttttttttGCCAAGTGGATTATAATTACCATCTATTGAAATGAACC-CTCATGCATTTATTCAACAAGAATTTGTGTGCCTAACACACAGCGTGGCTGCCTGATACAGATACTTGACTTAAGAGAAT-----TCTAAAGGCTCTGCACGAAAGTGAAGTCACGATGTAAGGAGGCAAAGGACT----------CCGCCCTCAAACAGTCCAGTGGGCCTGAGAATGAGTCAGGGGTGGCGG---TCTGATGCTGCTGCACCCCCAGTTGTATCTGTGTATCCCAGTGACTGgggtgtgattcgaatatttaaagatactccttttcc-----atacggccgagtactttgaatgcaagccgagtacttgtggtgtgcagttagaga-ggcggcatgtttttaatgctgaagtaaaacttgtctgtgttggacttagtgagagaatggttttcattcaaagagattgtccaggccaactttg---atataaatttcactttacATCTCACACCCCACGTGACTCATAACACTTCACTCTGTCATCCGTAGAACTCAGTGCTGTTCTCATCAGCAAGGTAGATTCTGGCCCCAAAGAACTGG-GGAGGAATTTCAGGAACTGGTTCTATGATAAGCCTCATTGAGGTCACCAAACATACAGAGAAAATACTCTGAGAAATGTATAGAAGAAATCTAAGTTT---TCCATTGATTCATTTac----tcattcattcaaaaacatgcattgggtccctacaata-----aacaccagggataga----------acagatgatctccattcttgggcaact i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36476913 788 + 80974532 tggcactatccTATCTTC---------CTTGATTTTAAAAG-----------------------------------GCCAAATGGATTGTGATTACCTTTTGTTAAAATGGACAGCTCATACATTAATTCAACAAGAGTTTGTGTGCCTGATA-------------------ACAGACATTTAA-TTATGAGAATCCAACCCTATGTACTCCTTACAAA---GAAGCAATGGCTTGTGGAAGTGAAAGTCTTGACCTACACCTTCCGCCAATGAGTCCATTGAGGCTGAGGGTGAGTGGAAGTTGGGGG---TCCAATGCTGTTTTGCTCTCAACTGTATCtgtgtatctcactgaccagagtgtgattcaaataattaaagatacatattgttcatataatatggc------ccttaaatataagccaagtacttttggtgctcatccagagaccatgatgtgtt-ccaacactgaggcaaaacttgaccatgttgggtttcatgagagaaggGTTTT-ATTCCAAGAGATTTTCAGGACAAAGCTTGGTAATATAAATTTCACCCTATACTTTCAATCCCAAGTGACACATAGAGTTTAATTCCATTAATCATGGAGCTCAGCACTGTTCTGATCAGGAAGATGGATTCTGACCCAAA-------------GGTTTTCAGGGACTGATTTTGTTATAAGTTGGACAGAGGCTACTGAGCATAT--AAGAGACAATTTGAGAAATACTCAGAAGA---CTATCTGTAACTCCTTTTATCCATGTAGTCCttcattcattcaaaaatatttatcagacccctacaatatgaagggcactggggatgcaacagaataacacagatgatcacccatcttggatgag- i canFam3.chr7 I 1113 C 0 e mm10.chr1 178893008 294 + 195471971 I e calJac3.chr19 14395223 0 - 49578535 C a score=210169.000000 s hg38.chr1_KI270759v1_alt 350459 122 + 425601 TACAGTGTAGCAGGAATACAGACACTGAGCACCGAG-------TAACTGATAATATACGCACATC-AGCGCTGAATCGGCACTAAGGGAAGAAGGGGTCGGGTGGGGCTGAGGAA----------TGGCA---------------CAGA-GCGGTG s panTro4.chr1 225106180 122 + 228333871 TACAGTGTAGCAGGAATACAGACACTGAGCACCGAG-------TAACTGATAATATACGCACATG-AGCGCTGAATCGGCACTAAGGGAAGAAGGGGTCGGGTGGGGCTGAGGAA----------TATCA---------------CAGA-GCGGTG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140365624 125 - 143122389 ----GTGTAGTAGGGATACAGACATTGAGCACCGAGCACCGACTAGCTGATAATATACGCACATC-AGCGCTGAACTGGCACTAAGGGAAGAAGGGGCCGGGTGGGGCTGAGGAA----------TGTCA---------------CAGA-GTGGTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17070885 137 - 229590362 tacagtgtagcagggatacagacaCTGAGCACCTAG-------TGACTGGTGATACACGTGCATC-AGCGCTGAATCGTCACTAAGGAAAGAAGGGGCCTGGTGGTGCCGAGGAA----------TGTCACGAGGGCTCTCTGCCCAGA-GCGGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223835082 137 - 227556264 tacagtgtagcagggatacagacactGAGCACCAAG-------TGACTGGTGATACACGCGCATC-AGCGCTGAATCGGCACTAAGGAAAGAAGGGGCCTGGTGGTGCCGAGGAA----------TGTCACGAGGGCTCTCTGCCCAGA-GCGGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16885193 137 - 220367699 TACGGTGTAGCAGGGATACAGACACTGAGCACCGGG-------TGACTGGTGATATACGCGCATC-AGCGCTGAGTCGGCACTAAGGGAAGAAGGGGCCTGGTGGTGCCGAGGAA----------TGTCACGAGGGCTCTCTGGCCAGA-GCGGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82686645 137 + 85787240 tacagtgtagcagggatacagacaCTGAGCATCGAG-------TGACTGGTGATATAGGCGCATC-AGCGCTGAATCGGCACTAAGGGAAGAAGGGGCCTGGAGCTGCTGAGGAA----------TGTCACGAGGGCTCTCTGGCCAGA-GCGATG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36477701 154 + 80974532 tatggtctaatggagatgcagacatgGACTTGCCAGGTCCAA-CACCTAATAATACATGAGCGCCAAGTGCTCACCAACCTCTGTGGGAAGAAGGGTCCAAGTAA-GCTGAGGGAATCAGAAGGCTGTAGCAAAAGCTGCCTGGGCAGATGTGATG i canFam3.chr7 C 0 C 0 e mm10.chr1 178893008 294 + 195471971 I e calJac3.chr19 14395223 0 - 49578535 C e ponAbe2.chr1 226480089 28 - 229942017 I a score=438816.000000 s hg38.chr1_KI270759v1_alt 350581 209 + 425601 ATTCTCAAGCTCTCTCCTC-----CTCGAGTCCCACTCATTCTCTACTCACGCTCATCTGTGTCTTCCAAAGTTTGCCACAGTCCGTCCTCTAAATGCCTGAGTCACTCACACCTGTTCTGTCATTCCCTGCTTTGATATAGAGATGATCCAACACAAATCATGACAAACCACTAAGCCAAATGCAAGACTCTGAATCCACAGCTGAGTGTGAT s panTro4.chr1 225106302 209 + 228333871 ATTCTCAAGCTCTCTCCTC-----CTCGAGTCCCACTCATTCTCTACTCACGCTCATCTGTGTCTTCCAAAGTTTGCCACAGTCCGTCCTCTAAACGCCTGAGTCATTCACACCTGTTCTGTCATTCCCTGCTTTGATACAGAGATGATCCAACACAAATCATGACAAACCACTAAGCCAAATGCAAGATTCTGAATCCACAGCTGAGTGTGAT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140365749 197 - 143122389 ATTCTCAAGCTCTCTCCTC-----CTCAAGTCCCCCTCATT-----------CTCATCTGTATCTTCCACAGTTTGCCACAGTCCATCCTGTAAACGCCGGAGTCATTCACAGC-GTTCTGTCATTCCCTGCTTTGATATAGAGATTATCCAACACAAATCATGACAAACCACTGAGCCAAATGCAAGACTCCGAATCCACAGCTGAGTGTGAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17071022 208 - 229590362 ACTCTCAAGCTCTGTCCTA-----CTGGAGTCCCACTCATTCTCTACTCATGCTCATCTGTGTCTTCCAGAGTTTGCCACAGTCAGTCCTCTAAACGCCTGAGTCGTTCACAGCTGTTCTGTCATTCCCTGCTTTGATATAGAGATGATGCAACACAAATCATGACAAACCACTAAGCCAAAGG-AAGACTCCGAATCCACAGCGAAGTGTGAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223835219 208 - 227556264 ACTCTCAAGCTCTGTCCTA-----CTGGAGTCCCACTCATTCTCTACTCACGCTCATCTGTGTCTTCCAGAGTTTGCCACAGTCAGTCCTCTAAACGCCTGAGTCGTTCACAGCTGTTCTGTCATTCCCTGCTTTGATATAGAGATGATCCAACACAAATCATGACAAACCACTAAGCCAAAGG-AAGACTCCGAATCCACAGCGAAGTGTGAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16885330 208 - 220367699 ACTCTCAAGCTCTGTCCTA-----CTGGAGTCCCACTCATTCTCTACTCACGCTCATCTGTGTCTTCCAGAGTTTGCCACAGTCAGTCCTCTAAACGCCTGAGTCGTTCACAGCTGTTCTGTCATTCCCTGCTTTGATATAGAGATGATCCAACACAAATCATGACAAACCACTAAGCCAAATG-AAGACTCCGAATCCACAGCGAAGTGTGAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82686782 208 + 85787240 ACTCTCAAGCTCTGTCCTA-----CTGGGGTCCCACTCATTCTCTACTCACGCTCATCTGTGTCTTCCAGAGTTTGCCACAGTCAGTCCTCTAAACGCCTGAGTCGTTCACAGCTGTTCTGTCATTCCCTGCTTTGATATAGAGATGATCCAACACAAATCATGGCAAACCACTAAGCCAAATG-AAGACTCCGAATCCACAGCGAAGTGTGAT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178893302 195 + 195471971 attttctagctcttctttaggggccctgtgttccatccaatagttg-----actTAACTGGGTTTTCC------TGCC--------TCCCTTCAAAGCCCAAAACCTTCACAGATGCTCTGCCCTCTGCTGTATTGATGGAGAGATTGGCTGTTACCCATTGTGATAAACTACTGAGCTAAATGTGAGACTCCAAACCCACAGCTTATGGTTAT i mm10.chr1 I 294 C 0 s canFam3.chr7 36477855 192 + 80974532 ACTCTGAAGCCCTCCGCTC-----GTCTATACTCTTCTGTT-----------CCCAGATTTGTC-----AAGCTCCCCACAACCCATCCTTTAAACGCCTGAGCCATTCAGCATTGCCCTGTCATTTGCTGCAGTGATGTAGATATTGCCTGACACAAATCATGATAAACTGCTGAGCCAAACC-AAGACTCCGAATCCACTGCTAATTGTTAC i canFam3.chr7 C 0 C 0 e calJac3.chr19 14395223 0 - 49578535 C e ponAbe2.chr1 226480089 28 - 229942017 I a score=1173786.000000 s hg38.chr1_KI270759v1_alt 350790 348 + 425601 CTTTAATGACGACTAACCATCATATCACAAG---TTGTGTCATAACCAGAAACAAAACAGCCAGA---GAAGGAGGGCTTTAG----GTTGGTCTGGGGACAGTACGGA---GA--GCCCAAGACGCCCTTGGGCACCCACA-GGGGGCTGTGATTATTCAAGGATGGCTTGATTTAGGCACAATTAGGCATTGGACAGGATGGAGCATACAAATGTGTTGGGGATTAATTCATTAAAAATCTGTCTTGAGCTTTAATAGAGCTTCAGTCAGAGTGTCCAACCATAAATTCTCACCTGTTTCACAACTGGTTCAGGCCCAATTGAGCATTAACAGA-TTTTTTTTTTTGTTCATGCAAATGAGGT s panTro4.chr1 225106511 347 + 228333871 CTTTAATGACGACTAATCCTCATATCACAAG---TTGTGTCGTCACCAGAAAGAAAACAGCCAAA---GAAGGAGGGCTTTAG----GTTGGTCTGGGGACAGTGCGGA---GA--GCCCAAGACGCCCTTGGGCACCCACA-GGAGGCTGTGATTATTCAAGGATGGCTTGATTTAGGCACAATTAGGCATTGGACAGGATGGAGCATACAAATGTGTTGGGGATTAATTCATTAAAAATCTGTCTTGAGCTTTAATAGAGCTTCAGTCAGAGTGTTCAACCATAAATTCTCACCTGTTTCACAACTGGTTCAGGCCCAATTGAGCATTAACAGA-TTTTTTTTTT-GTTCATGCAAATGAGGT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140365946 345 - 143122389 CTTTAATGACGACTAATCATCATATCACAAG---TTGTGTCGTAACCAGAAAGAAAACAGCCAAA---GAAGGAGGGCTTTAG----GTTGGTCTGGGGACAGTGCGGA---GA--GCCCGAGATGCCCTTGGGCACCCACA-GGGGGCTGTGATTATTCAAGGATGGCTTGATTTAGGCACAATTAGGCATTGGACGGGATGGAGCATACAAATGCTTTGGGGATTAATTCATTAAAAATCTGTCTTGAACTTTAATGGAGCTTCAGTCAGAGTATCCAACCATAAATTCTCACCTGTTTCACAACTGGTTCAGGCCCAATTGAGCATTAACAGA-TTTTTTTT---GTTCATGCAAATGAGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17071230 347 - 229590362 CTTTAATGATGACTAATCATCGTATCACAAG---TTGTGTAGTAACCAGAAAGAAAGCAGCCAAA---GAAGGAGGGCTTTAG----GTTAGTCCAGGGACAGTGCAGA---GA--GCCTGAGACGCCCTTGGGCACCCACAGGGGGGCTGTGATTATTCAAGGATGGCTTGATTTAGGCACAATTAGGCATTGGACAGGATGGAGCATATAAATGAGTTGGGGATTAATTCATTAAAAACCTGTCTTGAACATTAATAGAGCTTCAGTCAGAGTATCCAGCCATAAATTCTCACCTGTTTCACAACTGGTTCAGGCCCAATTGAGCATTAACAGA-TTTTTTTTT--GTTCATGCAAATGAGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223835427 347 - 227556264 CTTTAATGATGACTAATCATCGTATCACAAG---TTGTGTCGTAACTAGAAAGAAAGCAGCCAAA---GAAGGAGGGCTTTAG----GTTAGTCCAGGGACAGTGCAGA---GA--GCCTGAGACGCCCTTGGGCACCCACAGGGGGGCTGTGATTATTCAAGGATGGCTTGATTTAGGCACAATTAGGCATTGGACAGGATGGAGCATATAAATGAGTTGGGGATTAATTCATTAAAAACCTGTCTTGAACATTAATAGAGCTTCAGTCAGAGTATCCAGCCATAAATTCTCACCTGTTTCACAACTGGTTCAGGCCCAATTGAGCATTAACAGA-TTTTTTTTT--GTTCATGCAAATGAGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16885538 348 - 220367699 CTTTAGTGATGACTAATCATCGTATCACAAG---TTGTGTCGTAACCAGAAAGAAAGCAGCCAAA---GAAGGAGGGCTTTAG----GTTAGTCCAGGGACAGTGCAGA---GA--GCCTGAGACGCCCTTGGGCACCCACAGGGGGGCTGTGATTATTCAAGGATGGCTTGATTTAGACACAATTAGGCATTGGACAGGATGGAGCATATAAATGAGTTGGggattaattcattaaaaaccTGTCTTGAACATTAATAGAGCTTCAGTCAGAGTATCCAGCCATAAATTCTCACCTGTTTCACAACTGGTTCAGGCCCAATTGAgcattaacagatttttttttt--gttcatgcAAATGAGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82686990 346 + 85787240 CTTTAATGGTGACTAATCATCATATCACAAG---TTGTGTCGTAACCAGAAAGAAAGCAGCCAAA---GAAGGAGGGTTTTAG----GTTAGTCCAGGGACATTGCAGA---GA--GCCTGAGACGCCCTTGGGCACCCACAGGGGGGCTGTGATTATTCAAGGATGGCTTGATTTAGGCACAATTAGGCATTGGACAGGATGGAGCATATAAATGAGTTGGGGATTAATTCATTAAAAACCTGTCTTGAACATTAATAGAGCTTCAGTCAGAGTATCCAGCCATAAATTCTCACCTGTTTCACAAC-GGTTCAGGCCCAATTGAGCATTAACAGA-TTTTTTTTT--GTTCATGCAAATGAGGT i chlSab2.chr25 C 0 I 8 s calJac3.chr19 14395223 346 - 49578535 CTTTAATGATAACTAATCAACGTATCCCAAG---TTGTGCTGTAACCAGAAAGAAAACAGCCAAA---GCAGGAGGGCTTTAG----GTCAGTCTGGGGACAGTGCGGA---GA--GCCCAATATGCCCTTGGGCACCCATA-GGGGGCTGGGATTATTCAAGGATGGCTTGATTTAGGCACAGTTAGGCGTTGGACAGGATGGCGCATATAGATGAGTTGGGGATTAATTCATTAAAAATCTGCCTTGAACATTAATAGAGCTTCAGTCAGAGTATCCAACCGTAAATTCTCACCTGTTTCACAACTCGTTCAGGCCCAATTGAGCATTAACAGA-TAATTTTTT--GTTCATGCAAATGAGGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178893497 350 + 195471971 CTTTTATGATAACTAATTGTCACGTCACAAGCCATTCTGTTCATTACAGAAAGCAAACAGCTGAA---GGAGGATGTCTTTTG----GTTAGTCCA-GGCCAGTGCACAGAGGA--GCCCAAGATGCCCTTAGGCACCCCGA-GGGCTCTGTGGTTACTCGAGGATAGCTTGATTTAGGCACAATTAGGCACTGGAAAGGATGGAGCATACAAATGAGTC-AGGCTTAATTCATTAAAAAACTGCCTTGAACATTAATTGAGCTTCAATCAGAGTATTCAACCATAAATTCTCACCTGTTTCACAACTGATTCAGGCTCAATTGAGCATTAATAGA-TTTTTTTTG--GTTCATGCAAATGAGGT i mm10.chr1 C 0 C 0 s canFam3.chr7 36478047 353 + 80974532 CTTTAATGATAACTAATCATCGTATCACCAG---TCATGCTGCTACTAG-AAGAAAACAGCCAAACTGGGAGGCGGGGGGTGGGGGTGCTTGTTCAGGGCCAGTACACA---GAGTGCTTGAGATGCCCTTGGGCACCCAGA-GTGCCCTGTGATCACTCAAGGGTGGCCAGATTTAGGCACAGTTAGGCAGTAAAAGGGTTGGAGCATACAAATGAGTTGGGGCTCAATTCATTAAGAAACTGTCTTGAACATTAATAGAGCTTCAATCAGGGTATCCAACCATAAATTCTCACCTGTTTCACAACTGGTTCAGGCTCAATTGAGCATTAATAGA-TTTTTTTT---GTCCATGCAAATGAGAT i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226480089 28 - 229942017 I a score=1821.000000 s hg38.chr1_KI270759v1_alt 351138 31 + 425601 TTTGTGTGTAattcattcattcatttcattt s panTro4.chr1 225106858 27 + 228333871 TTTGTGTGTAATTCATTCATT----TCATTC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140366291 8 - 143122389 GA-----------------------TAATTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17071577 8 - 229590362 -----------------------GATAATTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223835774 8 - 227556264 -----------------------GATAATTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16885886 8 - 220367699 -----------------------GATAATTC i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14395569 8 - 49578535 -----------------------GATAATTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178893847 8 + 195471971 -----------------------GATAATTC i mm10.chr1 C 0 I 7 s canFam3.chr7 36478400 8 + 80974532 -----------------------GATAATTT i canFam3.chr7 C 0 C 0 e chlSab2.chr25 82687336 8 + 85787240 I e ponAbe2.chr1 226480089 28 - 229942017 I a score=1064170.000000 s hg38.chr1_KI270759v1_alt 351169 386 + 425601 atttcatGTCTAATTGAACAATTTTTGAATAGTTACATTTGT-GGAGTAGTTAAGTTGTATCAAATTGTCTAATGTACCTAGTAA-TTTTGTAACTAAAACAGAGCTGAATTTCATTTTGATATAACAAA--------AGGAGAA--------CCACAGA----AGTAG-A------GGTGGTTTGAGGAATAGTCGGCTTTTAAGAGACTTTATGATACTCTGTT----CTTTAGGGCAATGACCACAGTTGCTGT----TTCTTTTTATCCTCACTTTTCTTTCTTT----TCACTCCCTACCGATGAGATCAATGAAAATTTGGGGGCA------------TTTCTAGATTTGGCA----------------GCCTCCCATTTATAAG----CATACAT-TTTTTTAGTTTTGTGCCCTGACATGCCCATTTTTCTGAGGGTCAAATGTGTCTGTCT s panTro4.chr1 225106885 386 + 228333871 ATTTTGTGTGTAATTGAACAATTTTTGAATAGTTACATTTGT-GGAGTAGTTAAGTTGTATCAAATTGTCTAATGTACCTAGTAA-TTTTGTAACTAAAACAGAGCTGAATTTCATTTTGATATAACAAA--------AGGAGAA--------CCACAGA----AGTAG-A------GGTGGTTTGAGGAATAGTCGGCTTTTAAGAGACTTTATGATACTCTGTT----CTTTAGGGCAATGACCACAGTTGCTGT----TTCTTTTTATCCTCACTTTTCTTTCTTT----TCACTCCCTACTGATGAGATCAATGAAAATTTGGGGGCA------------TTTCTAGATTTGGCA----------------GCCTCCCATTTATAAG----CATACAT-TTTTTTAGTTTTGTGCCCTGACATGCCCATTTTTCTGAGGGTCAAATGTGTCTGTCT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140366299 385 - 143122389 ATTTCGTGTGTAATTGAACAATTTTTGAATAGTTACATTTGT-GGAGTAGTTAAGTTGTATCAAATTGTCTGATGTACCTAGTAA-TTTTGTAACTAAAACAGAGCTGAATTTCATTTTGATGTAACAAA--------AGGAGAA--------CCAAAGA----AGTAG-A------GGTGGTTTGAGGAATAGTAGGCTTTTAAGAGACTTGATGATCTTCTGTT----CTTTAGGGCAATGACCACAGTTGCTGT----TTCTTTTTATCCTCGCTATTCTTTCTTT----TCACTCCCTACCGATGAGATCAATGAAAATTTGGGGGCA------------TTTCTAGATTTGGCA----------------GCCTCCCATTTATAAG----CATAC-T-TTTTTTAGTTTTGTGCCCTGACATGCCCATTTTTCTGAGAGTCAAATGTGTCTGTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17071585 387 - 229590362 ATTTCATGTGTAATTGAACAATTTTTGAATAGTTACATTTGT-GGAGAAGTTAAGTTGTATCAAATCGTCTAATGTACCTAGTAA-TTTTGTAACTAAAACAGAGCTGAATTTCATTTTGATATGACAAA--------GGGAGAA--------CCAAAGA----AGTAG-A------GGTGGTTTGAGGAATAGCAGGCTTCCAAGAGACTTCATGATACTCTGTT----CTTTAGGGCAATGGCCACAGTTGCTGT----TTCTTTTTATCCTCACTATTCTTTCTTT----TCACTCCCTACTGATGAGATCAATGAAAACTTGGGGGCA------------TTTCTAGATTTGGCA----------------GCCTCCCATTTATAAG----CATACATATTTTTTAGTTTTGTGCCCTGACATGCCAATTTTTCTGAGGGTCAAATGTGTCTGTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223835782 387 - 227556264 ATTTCATGTGTAATTGAACAATTTTTGAATAGTTACATTTGT-GGAGAAGTTAAGTTGTATCAAATCGTCTAATGTACCTAGTAA-TTTTGTAACTAAAACAGAGCTGAATTTCATTTTGATATGACAAA--------GGGAGAA--------CCAAAGA----AGTAG-A------GGTGGTTTGAGGAATAGCAGGCTTCCAAGAGACTTCATGATACTCTGTT----CTTTAGGGCAATGGCCACAGTTGCTGT----TTCTTTTTATCCTCACTATTCTTTCTTT----TCACTCCCTACTGATGAGATCAATGAAAACTTGGGGGCA------------TTTCTAGATTTGGCA----------------GCCTCCCATTTATAAG----CATACATATTTTTTAGTTTTGTGCCCTGACATGCCAATTTTTCTGAGGGTCAAATGTGTCTGTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16885894 387 - 220367699 ATTTCATGTGTAATTGAACAATTTTTGAATAGTTACATTTGT-GGAGAAGTTAAGTTGTATCAAATCGTCTAATGTACCTAGTAA-TTTTGTAACTAAAACAGAGCTGAATTTCATTTTGATATGACAAA--------GGGAGAA--------CCGAAGA----AGTAG-A------GGTGGTTTGAGGAATAGCAGGCTTCTAAGAGACTTTATGATATTCTGTT----CTTTAGGGTAATGGCCACAGTTGCTGT----TTCTTTTTATCCTCactattctttcttt----tcactcCCTACTGATGAGATCAATGAAAACTTGGGGGCA------------TTTCTAGATTTGGCA----------------GCCTCCCATTTATAAG----CatacatattttttagttttgtgcCCTGACATGCCAATTTTTCTGAGGGTCAAATGTGTCTGTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82687344 387 + 85787240 ATTTCATGTGTAATTGAACAATTTTTGTATAGTTACATTTGT-GGAGAAGTTAAGTTGTATCAAATCATCTAATGTACCTAGTAA-TTTTGTAACTAAAACAGAGCTGAATTTCATTTTGATATGACAAA--------GGGAGAA--------CCAAAGA----AGTAG-A------GGTGGTTTGAGAAATAGCAGGCTTTTAAGAGACTTTATGATATTCTGTT----CTTTAGGGCAATGACCACAGTTGCTGT----TTCTTTTTATCCTCACTATTCTTTCTTT----TCACTCCCTACTGATGAGATCAATGAAAACTTGGGGGCA------------TTTCTAGATTTGGCA----------------GCCTCCCATTTATAAG----CATACATATTTTTTAGTTTTGTGCCCTGACATGCCAATTTTTCTGAGGGTCAAATGTGTCTGTCT i chlSab2.chr25 I 8 C 0 s calJac3.chr19 14395577 384 - 49578535 ATTTCGTGTGTAATTGAACAATTTTTGAATAGGTACATTTGT-GGAGTAGTTAAGTTGTAGCAAATTGTCTAATGTACCTAGTAATTTTTTTACCTGAAACAGAGCTGAATTTCATTTTGATATAACAAA--------AAGAGAA--------CCAAAGA----AATAG-A------GAAGGTTTGAGGAGCAGTCGGCTTTTA--AGACTTTACGATGTTCAGTT----CCTTAGGGCAGTGGCCACAGGTGCTAT----TTCTTCTGATCTTCACTATTCTTTCTTTCTTCTCACTCTGTACCAATGAGATCAATGAAAATTTGGGGGCA------------TTTCTAGATTTGGCA----------------GCCCCCCGTTTATA-------GCACTT-TTTTTTAGTTTTGTGCTCTGACGTGCCAGTTTTTCTGAGGGTCAGA--TGTCTGTCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178893862 380 + 195471971 ------TGTGTAATTGAATAATTTTCAAATAGATTTATTCACAGGAACAGTTAAATTGTGCCATGTTGTCTAATGTCGCTCATGA-TGCTTTAACCAAAGGGAAGCGGGGCATCACTCTGGAACAATAGAGATGTCACGGGACAGAGCCGGTTCCGGTGA----AGTCGCC------GCTGGTGTAAAGAGCAGCAGACTT-TAAGACACCTGGCGATGTTCACTTGGCCTTTTAGGACCACG-CCCCAGATGCTAT----ATGTTTTTA---------------------------------------GGGTCAATACAAATTTGTAGGAA--------GTGGTTTCTCAGTTTGGCA----GCCAACTGCCCCGCCCCCCATTTGTAAG----CACACA--CTCCCTAGTTTTGTGCCCCAaaacaccagccttcctgagagttcagtctgtcagcct i mm10.chr1 I 7 I 441 s canFam3.chr7 36478408 417 + 80974532 AGTTCATGTGCAATTGAACAATTTTCACATAGTTATGTTCAG-GAAGCAGTTAAGTTGTATCAAATCGTCTAATGTACC-AGTAA-TTATTTAAC----ATAGAGCTGAGTTTCATTTTGATATACTAAA--------GAGACAA--------CTGGAGGTCATAGTAG-ATTAGTTAATAATCTAAAGGGTAGTCGACTT-TAAGAG-CTTTACAATATTCAGTC----CTTTGGGGCAGCAGTCACCATGGCTCTTCACTTTTGTTTATCCATACCACTCTC---------TTACTCCCTAGCAGTGAGATA---GGAAATATTTGGGCAGTAGGAGGGTGGTTTCCAGGTTTGGGATGAAGGGAGAGGTTGGGTCCCTCGTGTATAAGCCTACATACATACATCCTAGCTTTGTGCTCTGACATGCC-ATTTTTCCCATGGTTACATGTGTGTGCCC i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226480089 28 - 229942017 I a score=260895.000000 s hg38.chr1_KI270759v1_alt 351555 118 + 425601 TTAAAACACCGCGCTGGTGTCTTTCAAACCGCTTATCAAGGGTTGTTTCTCCCACGAGACCTTGTCACCCCTGAGCCTGAAGTCGCGCGCTGAGAACTAATTGCAGTAGCTGCATACA----- s panTro4.chr1 225107271 118 + 228333871 TTAAAACACCGCGTTGGTGTCTTTCAAACCACTTATCAAGGGTTGTTTCTCCCATGAGACCTTGTCATCCCTGAGCCTGAAATCGCGCGCTGAGAACTAATTGCAGTAGCTGCATACA----- i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140366684 118 - 143122389 TTAAAACACCGCATTGCTGTCTTTCAAACCACTTATCAAGGGTCGTTTCTCCCATGAGACCTTGTCATCCCTGAGCCTGAAATCGCATGCTGAGAACTAATTGCAATCGCTGTATACA----- i nomLeu3.chr5 C 0 I 324 s rheMac3.chr1 17071972 118 - 229590362 TTAAAACACCGCGTTGCTGTCTTTCAAACCACTTATCAAGGGTTGTTTCTGCCATGAGACTGTGTCATCCCTGAGCATGAAATCCCATGCTGAGAACTAATTGCAATTGCTGTATACA----- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223836169 118 - 227556264 TTAAAACACCGCGTTGCTGTCTTTCAAACCACTTATCAAGGGTTGTTTCTGCCATGAGACTGTGTCATCCCAGAGCATGAAATCCCATGCTGAGAACTAATTGCAATTGCTGTATACA----- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16886281 117 - 220367699 TTAAAACACCGCGTTGCTGTCTTTCAAACCACTTATCAAGGGTTGTTTCTGCCATGAGACTGTGTCATCCCTGAGCATGAAAT-CCATGCTGAGAACTAATTGCAATTGCTGTATACA----- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82687731 118 + 85787240 TTAAAACACCGTGTTGCTGTCTTTCAAACCACTTATCAAGGGTTGTTTCTGCCATGAGACTGTGTCATCCCTGAGCATGAAATCCCATGCTGAGAACTAATTGCAATTGCTGTATACA----- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14395961 118 - 49578535 TTAAAACACCAGGTTGACTTCCATGAAACCATGTATCAAGGTTTGTTTCTCCCATGAGAGCTTGTCATCCCTGAGCACGGAATCCCATGCTGGGAAGTCATTGCAATTGCTGTTTACA----- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36478825 118 + 80974532 -TCAAAGCTGACATCAGC-TCCTTCAAACCAAGCATTGGGCGTAG-CGCTCCCATGTACC--TGCCATCTCTGCACATGAACTCCTGCACTGAGGGCCAATTGCAGTAATTTTTGAGAGTGTC i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e ponAbe2.chr1 226480089 28 - 229942017 I a score=2800.000000 s hg38.chr1_KI270759v1_alt 351673 1 + 425601 C s panTro4.chr1 225107389 1 + 228333871 C i panTro4.chr1 C 0 I 2 s rheMac3.chr1 17072090 1 - 229590362 C i rheMac3.chr1 C 0 I 2 s macFas5.chr1 223836287 1 - 227556264 C i macFas5.chr1 C 0 I 2 s papAnu2.chr1 16886398 1 - 220367699 C i papAnu2.chr1 C 0 I 2 s chlSab2.chr25 82687849 1 + 85787240 C i chlSab2.chr25 C 0 I 24 s calJac3.chr19 14396079 1 - 49578535 C i calJac3.chr19 C 0 I 15 s canFam3.chr7 36478943 1 + 80974532 C i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e nomLeu3.chr5 140366802 324 - 143122389 I e ponAbe2.chr1 226480089 28 - 229942017 I a score=3996.000000 s hg38.chr1_KI270759v1_alt 351674 4 + 425601 ACGG s panTro4.chr1 225107392 4 + 228333871 AAGG i panTro4.chr1 I 2 C 0 s rheMac3.chr1 17072093 4 - 229590362 AAGG i rheMac3.chr1 I 2 I 18 s macFas5.chr1 223836290 4 - 227556264 AAGG i macFas5.chr1 I 2 I 18 s papAnu2.chr1 16886401 4 - 220367699 AAGG i papAnu2.chr1 I 2 I 18 s calJac3.chr19 14396095 4 - 49578535 ATAG i calJac3.chr19 I 15 I 5 s canFam3.chr7 36478944 4 + 80974532 AGAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e chlSab2.chr25 82687850 24 + 85787240 I e nomLeu3.chr5 140366802 324 - 143122389 I e ponAbe2.chr1 226480089 28 - 229942017 I a score=988688.000000 s hg38.chr1_KI270759v1_alt 351678 318 + 425601 T------------------GAACAAAGTTCAC-TGCT-----CCCTTCATTAAGGGCACCTGCCATGTCCACTGTTTCCTTCCGAGAACTC-TTTTGGTGAAGAC---GGGATTTTTGTTTTCTTTACATtccac-atagctgccagaaggccccttt-aaaatgcaaatctgatgtc-tctcagtctttaaaaccttcagtggcttcctgttggctacaggatagttg--aaacccttttgtggcctatggagctcttccgaatttgggccacacctacctttctgaccATAGAAACTACATAGAGATGACTGAACACCCCACCCCACCCCCACAGTCACATGCTTTGCC s panTro4.chr1 225107396 336 + 228333871 TATTTTTATATTGTTTCCTGAACAAAGTTCAC-TGCT-----CCCTTCGTTAAGGGCACCTGCCATATCCACTGTTTCCTTCCGAGAACTC-TTTTGGTGAAGAC---GGGATTTTTGTTTTCTTTACATtccac-atagctgccagaaggccccttt-aaaatgcaaatctgatgtc-tctcagtctttaaaaccttcagtggcttcctgttggctacaggatagttg--aaacccttttgtggcctatggagctcttccgaatttgggccacacctacctttctgaccATAGAAACTACATAGAGATGACTGGACACCCCACCCCACCCCCACAGTCACATGCTTTGCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226480117 320 - 229942017 ------------------TGAACAAAGTTCAC-TGCC-----CACTTCGTTAAGGGCACCTGCCATATCCACTGTTTCCTTCTGAGAACTCTTTTTGGTGAAGAA---GGGATTTTCATTTTCTTTACACTCCGCAatagctgccagaaggccccttt-aaaatgcagatctgatatc-tcttcgtctttaaaaccttcagtggcttccttttggctacaggatagttg--aaacccttttgtggcctgtggagctcttccgaatttgtgccacacctacctttctgaccATAGAAACTGCACAGAGATGACTGAACACCCCACCGCACCCCCACAGTCACATGCTTTGCT i ponAbe2.chr1 I 28 C 0 s nomLeu3.chr5 140367126 315 - 143122389 ------------------TGAACAAAGTTCAC-TGCT-----CCCTTCGTTAAGGGCACCTGCCATATCCACTGTTTCCTTCCGAGAACTC-TTTTGGTGAAGAC---GGGATTTTCGTTTTCtttacactccac-atagctgccagaaggccccttt-aaagtgcaaatctgatgtc-tctcagtctttacaaccttcagtggcttcctgttggctacaggatagttg--aaacccttttgtggcctatggagctcttccgaatttgggccacacctacctttctgaccacaGAAACTAC--AGAGGTGACTGAACACCCCACCCC-CTCTCACAGTCACTTGCTTTGCC i nomLeu3.chr5 I 324 I 951 s rheMac3.chr1 17072115 318 - 229590362 ------------------TGAACAAAGTTCAC-TGCT-----CCCTTCGTTAAGGGCACCTGCCATATCCACTGTTTCCTTACGAGAACTCTTTTTGGTGAAGAC---GGGATTTTTGTTTTCTTTGCActccac-atagctgccagaaggccccttt-aaaatgcaaagctgatgtc-tctcagcctttaaaaccttcagtggcttcctgttggctacagggtagttg--aaacccttttgtggcctatggagctcttccaaatttgggccacacccacctttctgaccacaGAAACTGCATGGAGATGACTTAACACCCCACACC-CTCTCACAGTCACGTGCTTTGCC i rheMac3.chr1 I 18 C 0 s macFas5.chr1 223836312 318 - 227556264 ------------------TGAACAAAGTTCAC-TGCT-----CCCTTCGTTAAGGGCACCTGCCATATCCACTGTTTCCTTACGAGAACTCTTTTTGGTGAAGAC---GGGATTTTTGTTTTCTTTGCACTccac-atagctgccagaaggccccttt-aaaatgcaaagctgatgtc-tctcagcctttaaaaccttcagtggcttcctgttggctacagggtagttg--aaacccttttgtggcctatggagctcttccaaatttgggccacacccacctttctgaccacagaAACTGCATGGAGATGACTTAACACCCCACACC-CTCTCACAGTCACGTGCTTTGCC i macFas5.chr1 I 18 C 0 s papAnu2.chr1 16886423 318 - 220367699 ------------------TGAACAAAGTTCAC-TGCT-----CCCTTCGTTAAGGGCACCTGCCATATCCACTGTTTCCTTACGAGAACTCTTTTTGGTGAAGAc---gggatttttgttttctttgcactCCAC-ATAGCTGCCAGAAGGCCCCTTT-AAAATGCAAAGCTGATGTC-TCTTAGCCTTTAAAACCTTCAGTGGCTTCCTGTTGGCTACAGGGTAGTTG--AAACCCTTTTGTGGCCTACGGAGCTCTTCCAAATTTGGGCCACACCCACCTTTCTGACCACAGAAACTGCATGGAGATGACTTAACACCCCACACC-CTCTCACAGTCACGTGCTTTGCC i papAnu2.chr1 I 18 C 0 s chlSab2.chr25 82687874 308 + 85787240 ------------------TGAACAAAGTTCAC-TGCT-----CCCTTCGTTAAGGGCACCTGCCATATCCACTGTTTCCTTACGAGAACTCTTTTTGGTGAAGAT---GGGATTTTTGTTTTCtttacactccac-atagctgccagaaggccccttt-aaaatgcaaatctgatgtc-tctcagcctttaaaaccttcagtggcttcctgttggctacagggtagctg--aaacccttttgtggcctatggagctcttccaaatttgagccacacccacctttctgaccATAGAAACAGCATAGAGATGACTTAACACCCCACACC-CTCTCACAGTCA----------C i chlSab2.chr25 I 24 C 0 s calJac3.chr19 14396104 316 - 49578535 ------------------TGAACAACGTTCACACGGC-----TCCTTCGTCAGGAGCACACGCCGTATCCACCGTTTCCTTGTGAGA---CTTTTTGGTGAAGAG---GGGATTTTCGTTTTCATTACACTCCTc-gtagctgccagaaggccccttt-aaaatgcaaatctgatgtc-tctcagtctttagaaccttcagtggcttcctgttggctacaggacagttg--aaacccctttgtagcctgtggagcgcttcctaatttgggccacacctacctgtctgaccATAGAAATTGCATAGAAATTAATGAACACCACACGCC-CTCTCACAGGCACATACTTTGCA i calJac3.chr19 I 5 C 0 s canFam3.chr7 36478948 343 + 80974532 TACTTCTATGTCATTTTTGGAACAAAGTTCAC-TATCCCACACCCTCTGCTTGGGGAAAAGGC---ATCCACTCTTTCCTTCTGGGGATGCTCATTGGTGAAGGCCGAGGAAACCGCAGTTTCACGGCCTCCCac-acacctgccagaatgcccttttaaaaaggcaaatctgatgtcggcactttctttaaatcccacagtggtttcttgtc-attacaggctagaggtcaaacccttttatggcctggaaagttggtcataacttggGCGACACCCGCCTTCCAGATCACGGACACTGCCTATAAGCTCCTGAAT-CCTTACACC-CCCCCACAGCCCTCGGCTTTGTA i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=1888746.000000 s hg38.chr1_KI270759v1_alt 351996 616 + 425601 GATGCCGATTCTTCTG-CTTCCAGCGGCTG-----------------------TTCATTCAC----TCACTCattcattcattcaatcaatagttaccaagaacataccctactccagtactgtactggAGCTCC-TCCTCCATTTGTGAGATTCTTCTTATGTCTTTGACatgttttgattgtaagatgtgttgcatatgcagatgtagaaacacacctgctcagtctatagaatgac-aaa----aaatctgtgtgcccaccacccaggttaggaaatagaacattccacta-gctcaggtgcccttgtgtgatcgtctgc-cttccgtcaccctcctgcctgttccagcggtgaccacagtgctgaattttctggttttgatccccttgcttgtcttataggttttaccacctaagtatgtgtcccccc----aaaacatactgtttagttttgtctgctgttgaacgttacataaatgaaatcatactctattctatgccct-tccgtaccttc---ttttgatcagtatttcatttttgagatccatcttgatgcgcacagctacaggttcttaatcttcattgctgtacgat-ttttccattgtagatggatattgcaaaat----attcttctgtgggtggatttctaacaagttttt s panTro4.chr1 225107732 616 + 228333871 GATGCCGTTTCTTCTG-CTTCCAGTGGCTG-----------------------ttcattcac----tcactcattcattcattcaatcaATAGTTACCAAGAACATACCCTACTCCAGTACGGTACTGGAGCTCC-TCCCCCATTTGTGAGATTCTTCTTATGTCTTTGACatgttttgattgtaagatgtgttgcatatgcagatgtagaaacacacctgctcagtctatagaatgac-aaa----aaatctgtgtgcccaccacccaggttaggaaatagaacattccacta-gctcaggtgcccttgtgtgatcgtctgc-cttccgtcaccctcctgcctgttccagcggtgaccacagtgctgaattttctggttttgatccccttgcttgtcttataggttttaccacctaagtatgtgtcccccc----aaaacatactgtttagttttgtctgctgttgaacgttacgtaaatgaaatcatactctattctatgccct-tccataccttc---ttttgatcagtatttcatttttgagatccatcttgatgcgcacagctacaggttcttaatcttcattgctgtacgat-ttttccattgtagatggatattgcaaaat----attcttctgtggctggatttctaacaagttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226480437 617 - 229942017 GATGCTGTTTCTTCTG-TTTCCAGTGGCTG-----------------------ttcattcac----tcactcattcattcattcaatcaATAGTTACCAAGAACATACCCTACTCCAGTACTGTACTGGAGCTCC-TCCTCCATTTGTGAGATTCTTCTTATGTCTTTGACAtgctttgattgtaagatgtgttgcatatacagatgtagaagcatatctgctcagtctatagaatgacaaaa----aaatctgtgtacccaccacccaggttaggaaatagaacattccacta-gcttaggtgcccttgtgtgattgtctgc-cttccgtcaccctcctgcctgttccagaggtgaccacagtgctgaattttctgtttttgatccctttgcttgtcttacaagttttaccacctaagtatgtgtcccccc----aaaacatactgtttagttgtatctgctgttgaacattacataaatgaaatcatactctcttctatgcccg-tccacatcttc---tttcaatcagtatttcatttttgagttccatcttgatgtgcacagctagaggttcttaatcttcattgctgtatgat-ttttctattgtagatggatattgcaaaat----attcttctgtgggtggatttctaacaagtttta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140368392 612 - 143122389 GATGCCGTTTCTTCTG-CTTCCAGTGGCTG-----------------------TTCACTCAC----TCACTCATTCATTCATTCAATCAGTAGTTACGAAGAACATAGCCTACCCCAGTACTGTACTGGAGCTCC-TCCTCCATTTGTGAGA---TTCTTATGTCTCTGACatgttttgattggaagatgtgttgcatatacacatggagaaacacatctgcacagtctatagaatgacaaaa----caatctgtgtgcccaccacccaggttaggaaatagaacattccagta-gcttaggtgcccttgtgtgattgtctgc-cttccgtcaccctcccgcctgttccagaggtgaccacagtgctgaattt--tgtttttgatcctcttgcttgtcttttaagttttaccacctaagtatgtgtccctcc----aaaacatactgtttagttttgtccgctgttaaacgttacataaatgaaatcatactctattctatgccct-tccataccttc---ttttgatcagtatttcatttttgagatctgtcttgatgggcacaggtacaggttcttaatcttcattgctgtatgat-ttttccatggtagatggatattgcaaaat----attcttctgtgggtggaTTTCTACCAagttttt i nomLeu3.chr5 I 951 C 0 s rheMac3.chr1 17072433 603 - 229590362 GATGCTGTTTCTTCTG-CTTCCGGTGGCTG-----------------------ttcattcactcattcattcattcattcattcaatcaATAGTTACCAAGAACATACCCTATTCCAGTACCGCACTGGAGCTCC-TCCTCCATTTGTGAGATTCTTCTTATGTCTTTGGCatgttttgattataagatgtgttgcatatacagatgtagaaacacatctgctcagtctatagaatgac-aaa----aaatctgtgtg-ccaccacccgggttaggaaatagaacatttcacta-gcttaggtgctcttgtgtgatcgtctgc-cttccgtcaccctcctgcctgttccagaggtgaccacagtgccgaattttctgtttttgatgccctggcttgtcttataagttttacgacctaagtgtgtgtctccccc---aaaacatactgtttagttttgtctgctgttgaacattacgcaaatgaaatcatactctgttctatgccct-tctataccttc---ttttgatcagtatttcattt------------ttgatacacacagctacaggttcttaatcttcattgctgtatgat-ttttccatt-----tggatattgcaaaat----attcttctgttggtggatttctaacaagttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223836630 603 - 227556264 GATGCTGTTTCTTCTG-CTTCCGGTGGCTG-----------------------ttcattcactcattcattcattcattcattcaATCAATAGTTACCAAGAACATACCCTATTCCAGTACCGCACTGGAGCTCC-TCCTCCATTTGTGAGATTCTTCTTATGTCTTTGGCATgttttgattataagatgtgttgcatatacagatgtagaaacacatctgctcagtctatagaatgac-aaa----aaatctgtgtg-ccaccacccgggttaggaaatagaacatttcacta-gcttaggtgctcttgtgtgatcgtctgc-cttccgtcaccctcctgcctgttccagaggtgaccacagtgccgaattttctgtttttgatgccctggcttgtcttataagttttacgacctaagtgtgtgtctccccc---aaaacatactgtttagttttgtctgctgttgaacattacgcaaatgaaatcatactctgttctatgccct-tctataccttc---ttttgatcagtatttcattt------------ttgatatacacagctacaggttcttaatcttcattgctgtatgat-ttttccatt-----tggatattgcaaaat----attcttctgttggtggatttctaacaagttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16886741 618 - 220367699 GATGCTGTTTCTTCTG-CTTCCAGTGgctg-----------------------ttcattcactcattcattcattcattcattcaatcaatagTTACCAAGAACATACCCTATTCCAGTACCGCACTGGAGCTCC-TCCTCCATTTGTGAGATTCTTCTTATGTCTTTGGCATGTTTTGATTGTAAGATGTGTTGCATATACAGATGTAGAAACACATCTGCTCAGTCTATAGAATGAC-AAA----AAATCTGTGTG-CCACCACCCGGGTTAGGAAATAGAACATTTCACTA-GCTTAGGTGCTCTTGTGTGATCGTCTGC-CTTCCGTCACCCTCCTGCCTGTTCCAGAGGTGACCACAGTGCcgaattttctgtttttgatgcCCTGGCTTGTCTTATAAGTTTTATCACATAAGTGTATGTcccccccccAAAAACATACTGTTTAGTTTTGTCTGCTGTTGAACGTTACGCAAATGAAATCATACTCTCTTCTATGCCCT-TCTATACCTTC---TTTTgatcagtatttcatttttgagatccATCTTGATGTACACAGCTACAGGTTCTTAATCTTCATTGCTGTATGAT-TTTTCCATT-----TGGATATTGCAAAAT----ATTCTTCTGTTGGTGGATTTCTAACAAGTTTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82688182 619 + 85787240 GATGTTGTTTCTTTTG-CTTCCAGTGGCTG-----------------------ttcattcactcattcattcattcattcattcaATCAATAGTTACCAAGAACATACCCTATTCTAGTACTGCACTGGAGCTCC-ACCTCCATTTGTGAGATTCTTCTTATGTCTTTGGCatgttttgattgtaagatgtgttgcatatacagatgtagaaacacatctgctcagtctatagaatgac-aaa----aaatctgtgtg-ccactacctgggttaggaaatagaacatttcgcta-gcttaggtgcccctgtgtgatcgtctgc-cttccgtcaccttcctgcctgttccagaggtgaccacagtgccgaattttctgtttttgatgccctggcttgtcttataagttttatcacataagtgtatgtccccccccccaaaacatactgtttagttttgtctgctgttgaacgttacgcaaatgaaatcatgctctgttctatgccctatctataccttc---ttttgatcggtatttcatttttgagatccatcttgatgtacacagctacaggttcttaatcttcattgctgtatgat-ttttccatt-----tggatattgcaaaat----attcttctgttggtggatttctaacaagttttt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14396420 639 - 49578535 GATGTTATGTCTTCTG-CTTCCAATGGCAGATCTtcactcactcactcactcactcactcactcactcactcactcattcattcagtcaGTCGTTGCCAAGAACATGGCCTGTTCCAGCGCTGTGCTGGAGCTCC-TCCTCCATCTGTGAGTTGCTTCTTAGGTCTTTCACatgttttcattgtgagaagtgttgtgtgtacagatctagaaacacatctgctcagtctctagaatgac-aga----aagcctgtgtgcccaccccccaggttaggaaacagaacatttcacta-ccttaggtgcccgcgtgcgatcg-ctgc-cttccgtcaccctcctgcctgttccagcggtgaccacagggcggaattttctgttttagattccctcgcttgtcttttaagttttaccgcctaagcatgtgtcccccgc---aaaacataccgtttagttttgtctgctgttgaatg-tacgtaaatgaaatcatagtctagtctgtgccct-ttcataccttc---tttcggtcagta-ttcattt---agatacatctccatgtgcacagccacaggctactgatcctcactgctgtatgatgttttccattgtagatggatattgcaaaat----attcttctgttggtggaTTTCTAACAAATGTTT i calJac3.chr19 C 0 I 323 s canFam3.chr7 36479291 595 + 80974532 CATGCAATTTTTTCTGTCTACAAATGGC-------------------------CTTAT--------GTGTTCATTCATTCATTCAGTGAATGGTTTTCAAGAACATGCTATATTCCA-TACCATCCTGGATCCCCTTCCTCGGTTAGTGACTTTCTATTTATTTCTCTTtcatgttttcattgtgaaat-tgtcatatccccagatgtagagacacatctgcccagtctacgaaataac-aaatcagacgtctgtgtgcccaccaggcaggttaggaactagaacacaaaagaaggcctgtgtgctcttcc----tcttctgtgcctatattgccttcctgactttcccagaagtgaccgccatacagggttatgtgtttatagtctccaagcttgcctgatga-ttttaccacccaaatttgt---------------------------gtttggtctgattttgaacatcacacaaatggaatcatattctcttcttggctgt-tctctaacttccattttcaaccaatatttcattcttgacatccatattggtgtgtggagctatagtttgttaattttctttgatgtatggc-tttcccattatcagaggatatcacagaatattgattcttctgttgatgggtttctaagagattttt i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=321930.000000 s hg38.chr1_KI270759v1_alt 352612 95 + 425601 aaaaactgattgttgaagttaatcgaacctatttctgc-tctaatgagatgctcacttgg--ttcctccattaatcatttaatatggtcaattacatt s panTro4.chr1 225108348 95 + 228333871 aaaaactgattgttgaagttaatccaacctatttctgc-tctaatgagatgctcacttgg--ttcctccattaatcatttcatatggtcaattacatt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226481054 96 - 229942017 aaaaactgattgttgaagttaatcaaacctatttctgcatctaatgagatgctcacttgg--ttcctccattaatcatttaatatggtcaattacatt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140369004 96 - 143122389 aaaaactgattgttgaagttaatcgaacctatttctgcatctaatgagatgctcacttgg--ttcctccattaatcatttaatatggtcaattacgtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17073036 96 - 229590362 aaatactgatggttgaagttaatcgaacctatctctgcatctaatgagatgctcacttgg--ttcctccattaatcatttaatatggtcagttacact i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223837233 96 - 227556264 aaatactgatggttgaagttaatcgaacctatctctgcatctaatgagatgctcacttgg--ttcctccattaatcatttaatatggtcagttacact i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16887359 96 - 220367699 AAATACTGATGGTTGAAGTTAATTGAACCTATCTCTGCATCTAATGAGATGCTCACTTGG--TTCCTCTATTAATCATTTAATATGGTCAGTTACATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82688801 96 + 85787240 aaatactgatggtagaagttcatcgaacctatctctgcatctaatgagatgctcacttgg--ttcctccattaatcatttaatatggtcagttacatt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14397382 96 - 49578535 aaaaaCtgagtgttgaagtcaagctaacctatttctgcatctaatgagatgctggcttga--ttccttccttaatcatttaatatggtcaattacatt i calJac3.chr19 I 323 C 0 s canFam3.chr7 36479886 98 + 80974532 aaaaattgatcattgaattttgtctaacccacttctgcatcaagtgagatgatcatgtggttttctgcctttaatcctttaatatggtaaattacatt i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=669688.000000 s hg38.chr1_KI270759v1_alt 352707 244 + 425601 gTGAGttttcttttctttttgagacagggtgtcactccgtcacccagactggaacgcagtgacaccaacaaggctcgctgcactcccaggctcaagtgatcctcccacctcagcctcccatgtagctgggactacaggtgtgcaccaccatg-cctggctaatagtttatattttttggagagacggggttttaccatgttgcccaggctggctttgaaatcctgagctcaagcaatcctcctgc s panTro4.chr1 225108443 244 + 228333871 gTGAGttttcttttctttttgagacagggtgtcactccgtcacccagactggagcgcagtgacacaaacaaggctcgctgcactcccaggctcaagtgatcctcccacctcagcctcccatgtagctgggactacaggtgtgcaccaccatg-cctggctaatagtttatattttttgtagagacagggttttaccatgttgcccaggctggctttgaaatcctgagctcaagcaatcctcctgc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226481150 239 - 229942017 gTGAG-----ttttctttttgagacagggtgtcactccgtcacccagactggagtgcagtgacacaaacaaggctcactgccctcccaggctcaagtgatcctcctacctcagcctcccgtgtagctgggactacaggtgtgcaccaccatg-cctggctaatagcttatattttttgtacagatggggttttaccatgttgccctggctggctttgaaatcctgagctcaagcaatccacctgc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140369100 243 - 143122389 gTGAGttttcttttctttttgagacagggtgtcactccgtcacccagactggagtgcaatgacacaaacaaggctcactgcactcccaggctcaagggatcctcccacctcagcctcccaagtagctgggactacaggtgtgcaccaccatg-cctggctaatggtttatatttttggtagagacggggttttgccatgttgcccaggctggccttgaaatcctga-ctcaagcaatccgcctgc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17073132 239 - 229590362 ATGAG-----ttttcattttgagacagggtatcactccgtcacccagactggagcacaatgacacaaacaaggctcactgcacccccaggctccagtgatcctcccacctcaggctcccatgaagctgggactacgggtgcacaccaccatg-cctgtctaatagtgtgtattttttgtagagacagggttttaccatgtttcctaggctggcctcgaaatcctgagctcaagcaatccacctgc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223837329 239 - 227556264 atGAG-----ttttcattttgagacagggtatcactccgtcacccagactggagtgcaatgacacaaacaaggctcactgcacccccaggctccagtgatcctcccacctcaggctcccatgtagctgggactacgggtgcacaccaccatg-cctggctaatagtgtgtattttttgtagagacagggttttaccatgtttcctaggctggcctcgaaatcctgagctcaagcaatccacctgc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16887455 239 - 220367699 ATgag-----ttttcattttgagacagggtatcactccgtcacccagactggagtgcaatgacacaaacAAGGCTCACTGCAcccccaggctccagtgatcctcccacctcagcctcccatgtagctgggactacgggtgcacaccaccatg-cctggctaatagtgtgtattttttgtagagacagggttttaccatgtttcctaggctggcctcgaaatcctgagctcaagcaatccacctgc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82688897 239 + 85787240 ACGAG-----ttttcattttgagacagggtgtcactccgtcacccagactggagtgcaatgacacaaacaaggctcactgcacctccaggctccagtgatcctcccacctcagcttccaatgtagctgggactacaggtgcacaccaccatg-cctggctaatagtgtatattttttgtagagacagggatttaccatgtttcccaggctggccttgaaatcctgagctcgagcaatccacctgc i chlSab2.chr25 C 0 T 17925 s calJac3.chr19 14397478 227 - 49578535 ACAAGTTATCttttcgttctgagacagggtgccactccgtcatccagactggagttcag-gacacaaacaaggctcactgcagtcccaggctcaagcgatcctcccaccccagccgcccat----------------gtgcacaccaccatgccctgactaatactttgtattttttgtagagatggggtgtcaccgtgttaccca-gctggcctcgaaatcctgagctcaagcaatccgcctgc i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36479984 0 + 80974532 C a score=158783.000000 s hg38.chr1_KI270759v1_alt 352951 51 + 425601 cttggcctcccaaagtgctgggattacaggtgggagccactgtacccggcc s panTro4.chr1 225108687 51 + 228333871 cttggcctcccaaagtgctgggattacaggtgggagccactgtacccggcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226481389 51 - 229942017 cttggcctcccaaagtgctgggattacaggtgggagccactgcgcccggcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140369343 51 - 143122389 cttggcctcccaaagtgctgggattacaggtgggagccactgcgcccggcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17073371 51 - 229590362 cttggcctccgaaaatgctgggattacaggtgggagccactgcgccaggcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223837568 51 - 227556264 cttggcctccgaaaatgctgggattacaggtgggagccactgcgccaggcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16887694 51 - 220367699 cttggcctccgaaaatgctgggattacaggtggcagccactgcgccaggcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82671211 51 + 85787240 cttggcctcccaaagtgctgggattacaggtgggagccactgcgccaggcc i chlSab2.chr25 T 17925 C 0 s calJac3.chr19 14397705 51 - 49578535 cttggcctcccgaagtgctggggttacaggtgggagccactgcacctggcc i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36479984 0 + 80974532 C a score=851048.000000 s hg38.chr1_KI270759v1_alt 353002 257 + 425601 AATCAGTTTTCCATTAATAATACTAAAAATTCTTGGATTCCTtcctacttattctttgaggcttatctcaaatatcatctcccctctcaagccttctctgatctcctttcccccctcctaattctttgctccaggaaagttgtttccatcttccaa--ctcaatggcattaaaatggtattttaatgtaggcac-----ttatattttaaatatttgtttacatat--acctctcctatcatatgagctcATCTAGATAATGATAG s panTro4.chr1 225108738 257 + 228333871 AATCAGTTTTCCATTAATAATACTAAAAATTCTTGGATTCCTtcctacttattctttgaggcttatctcaaatatcatctcccctctcaagccttctctgatctccTTTCCCCCCTCCTAATTCTTTGCTCCAGGAAAGTTGTTTCCGTCTTCCAA--CTCAATAGCATTAAAATGGTATTTGAATGTAGGCAC-----TTATATTTTAAATATTTGTTTACATAT--ACCTCTCCTATCATATGAGCTCATCTAGATAATGATAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226481440 257 - 229942017 AATCAGTTTTCCATTAATAATACTAAAAATTCTTGGATTCCTtcctgcttattctttgaggcttatctcaaatatcatctcccctctcaagccttctctgatctccTTTCCCCCCTCCTAATTCTTTGCTCCAGGGAAGTTGTTTCCATCTTCCAA--CTCAATGGCATTAAAATGGTATTTTAATGTAGGCAC-----TTATATTTTAAATATTTGTTTACATAC--ATCTCTCCTATCATATGAGCTCATCTAGATAATGATGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140369394 256 - 143122389 AATCAGTTTTCCATTAATAAGACTAAAAATTCTTGGATTCCTTCCTGCTTATTCTTTGAGGCTTATCTCAAATGTTATCTCCCCTCTCAA-CTTTCTCTGATCTCCTTTCCCGTCTCCTAATTCTTTGCTCCAGGAAAGTTGTTTCCATCTTCCAA--CTCAGTGGCATTCTGTAGGTATTTTAATGTAGGCAC-----TTGTATTTTAAATATTTGTTTACATGC--ATCTCTCCTATCATATGAGCTCATCTAGATAATGATGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17073422 254 - 229590362 AATCAGTTTTCCATTAATAATACTAAAAATTCTTGGATTCCTtcctgcttattctttgaggctgatctcaaatattatctcccctctcaagccttctctgatctccTTTCCCCCCTCCTAATTCTTTGCTCCAGGAAA---GTTCCCGTCTTCCAT--CTCAATGGCATTCTGTAGGTATTTTAATGTAGGCAC-----TTCTATTTTAAATATTTGTTTACATAC--ATCTCTCCTATCATATGAGCTCATCAAGATAATGATGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223837619 254 - 227556264 AATCAGTTTTCCATTAATAATACTAAAAATTCTTGGATTCCTTCctgcttattctttgaggctgatctcaaatattatctcccctctcaagccttctctgatctccttTCCCCCCTCCTAATTCTTTGCTCCAGGAAA---GTTCCCGTCTTCCAT--CTCAATGGCATTCTGTAGGTATTTTAATGTAGGCAC-----TTCTATTTTAAATATTTGTTTACATAC--ATCTCTCCTATCATATGAGCTCATCAAGATAATGATGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16887745 253 - 220367699 aatcAGTTttccattaataataataaaaattcttgGATTCCTTCCTGCTTATTCTTTGAGGCTGATCTCAAGTATTATCTCCCCTCTCAAGCCTTCTTTgatctcctct-ctccctcctaaTTCTCTGCTCCAGGAAA---GTTCCCGTCTTCCAT--CTCAATGGCATTCTGTAGGTATTTTAATGTAGGcac-----ttctattttaaatatttgtttacataC--ATCTCTCCTATCATATGAGCTCATCAAGATAATGATGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82671262 254 + 85787240 AATCAGTTTTCCATTAATAATACTAAAAATTCTTGGATTCCTtcctgcttattctttgaggctgatctcaaatattatctcccctctcaagccttctttgatctcctttcccccctccgaattctttgctccaggaaa---gtttccatcttccat--ctcaatggcattctgtaggtattttaacgtaggcac-----ttatattttaaatatttgtttacatac--gtctctcctatcatatgagctcatcaagATAATGATGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14397756 240 - 49578535 AATCAGTTTTCCATTAATAATACTAAACATTCTTGGGTTCCTTCCTGCTTATTC--TGAGGCTTATCTCAAATATTA--------------CCTCCTCTTATCTCCTTTCCTCACTACTAATTCTTTGCTCCAGAAAAGTTGTTTCCATCTTCCAA--CTCAATGGCATTCTGTAGGTATTTTAATACAAGCAC-----TTACATTTTAAATACTT-TTTATATCC--ATCTCACCTATTGTATGAGCTCATCAAGATAATGATGG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36479984 260 + 80974532 aatcaattttt------taatattaaaaatccttgcatctcttcctgtttattcttcaaggcttacctcaaatattatctcctctttgaaactttgtctgatctcctttctcccctcccccttctttgttccagaaaagttgtttccctcctctaatccctgatggcattctgaaggtattgtattataggcactgatgttatattttaattatttgtttgtatacttatctctcctatcatatgagctcatcaagataatgacag i canFam3.chr7 C 0 I 2 e mm10.chr1 178894242 441 + 195471971 I a score=895407.000000 s hg38.chr1_KI270759v1_alt 353259 310 + 425601 AGGGCACATgcagtggctcacacttgtaatcccagcacttcaggaagccaaggcaggaggatcacttgggcccaagttcaagaccagcctgggcaacatagtgagactccatctgtacaaaaaaaaaatttaaaagtatagtagccatgcatagtggcgtgtgcctgtagtcccagctactcggcaggctgaggtgggaggattgcgtgagcctgggaggttgaggctgcagtcagctatgatcatgccactacaccccagcctgggcaacagagcaagaccctgtctc---aaaaaa---------aTAATAATGATGGAA s panTro4.chr1 225108995 310 + 228333871 AGGGCACATgcagtggctcacacttgtaatcccagcacttcaggaagccaaggcaggaggatcacttgggcccaagttcaagaccagcctgggcaacatagtgagactccatctgtacaaaaaaaaaatttaaaagtatagtagccatgcatagtggcacgtgcctgtagtcccagctacccggcaggctgaggtgggaggattgcgtgagcctgggaggttgaggctgcagtcagctatgatcatgccactacaccccagcctgggcaacagagcaagaccctgtctc---aaaaaa---------aTAATAATGATGGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226481697 310 - 229942017 AGGGCACAcgcagtggctcacacttgtaatcctagcacttcaggaagccaaggcagggggatcacttgagcccaagttcaagaccagcctgggcaacatagtgagactccatctgtacaaaaaaaaaaattaaaagtgtattagccatgcatagtggcgtgtgactgtagtgccagctactcggcaggctgagattggaggattacgtgagcctgggaggttgaggctgcagtcagctatgatcatgctactgcaccccagcctgggcaccagagcaagaccctgtctc---aaaaaa---------aTAATAATGATGGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140369650 312 - 143122389 Aggccacacgcagtggctcacacttgtaatcccagcacttcaggaagccaaagcaggaggatcactcgagcccaagttcaagaccagcctgggcaacatagtgagactccatctatacaaaaaaaaaattt-taagtatattagccatgcatcgtggcatgtgcctgtagtcccagctactcggcaggctgaggtgggaggattgcgtgagcctgggaagttgaggctgcagtcagctacagtcatgccactgcaccccagcctgggcaacagagcaagaccctgtctcaaaaaaaaa---------aTAATAATGATGGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17073676 309 - 229590362 Aggccacacgcagtggctcacacttgtaatcccagcacttcaggaggccaaggcaggaggatcacttgagcccaaattcaagaccagcctgggcaacatagtgagataccatctgtac-aaaaaaaaaattaaaaatatattagccaggcatagtggcgtgtgtctgtagtcccagctactcggcaggcagaggtgggaggattgcgtgagcctgggaggtcgaggctgcagtcagctatgatcatgccactgcaccccagcctggggaacagagcaagaccctgtctc---aaaaaa---------aTAGTGATGATGGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223837873 309 - 227556264 Aggccacacgcagtggctcacacttgtaatcccagcacttcaggaggccaaggcgggaggatcacttgagcccaaattcaagaccagcctgggcaacatagtgagataccatctgtac-aaaaaaaaatttaaaaatatattagccaggcatagtggcgtgtgtctgtagtcccagctactcggcaggcagaggtgggaggattgcgtgagcctgggaggtcgaggctgcagtcagctatgatcatgccactgcaccccagcctggggaacagagcaagaccctgtctc---aaaaaa---------aTAGTGATGATGGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16887998 309 - 220367699 AGGCcacacgcagtggctcacacttgtaatcccagcacttcaggaagccaaggcaggaggatcacttgagcccaaattcaagactagcctgggcaacatagtgagataccatctgtac-aaaaaaaaattaaaaaatatattagccaggcatagtggcgtgtgtctatagtcccagctactcggcaggcagaggtgggaggattgcgtgagcctgggaggttgaggctgcagtcagctatgatcatgccactgcaccccagcctggggaacagagcaagaccctgtctc---aaaaaa---------atagtgaTGATGGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82671516 309 + 85787240 Aggccacacgcagtggctcacacttgtaatcccagcacttcaggaagctaaggcaggaggatcacttgagcccaaatttaagactagcctgggcaacatagtaagataccatctgtac-aaaaaaaaattaaaaaatatattagccaggcatagtggcgtgtgtctgtagtcccaactacttggcaggcagaggtgggaggattgcgtgagcctgggaggtcgaggctgcagtcagctatgatcatgccactgcaccccagcctggggaacagagcaagaccctgtctc---aaaaaa---------agaaTGATGATGGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14397996 311 - 49578535 Aggccaggagcaggggct----ctcgtaatcccagcacttcaggaagccaaggcaggaggatcacttgagcccaagatcaaggccagcctgggcaatagagtgagactc--tgtgtac--aaagataatttaaaaacacgttagccaggcatagtggcatgcgcctgtagtcccagccactcggcaggctgaggtgggaggattgcttgagtctgggaggctgaggctgcagagagctaagatcatgccactgcaccccagcccgggcagcagagcgaaaccctgactc---aaaataatgatgatgatgatgatgatgGAA i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36480244 2 + 80974532 I a score=213931.000000 s hg38.chr1_KI270759v1_alt 353569 60 + 425601 TCTTGTTCTTCAGCTTCCTTACGATTTTGCACTAATCTGAATGAAACCAGCCTGATCTAA s panTro4.chr1 225109305 60 + 228333871 TCTTGTTCTTCAGCTTCCTTACGATTTTGCACTAATCTGAATGAAACCAGCCTGATCTAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226482007 60 - 229942017 TCTTGTTCTTCGGCTTCCTTATGATTTTGCACTAATCTGAATGAAACCAGCCTGATTTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140369962 60 - 143122389 TCTTGTTCTTCACCTTCCTTATGATTTTGCACTAATCTAAATGAAACCAGCCTGATCTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17073985 60 - 229590362 TCTTGTTCTTCAGCTTCCTTATGATTTTGCACTAGTCTGAGTGAAACCAGCCTGATCTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223838182 60 - 227556264 TCTTGTTCTTCAGCTTCCTTATGATTTTGCACTAGTCTGAGTGAAACCAGCCTGATCTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16888307 60 - 220367699 TCTTGTTCTTCAGCTTCCTTATGATTTTGCACTAGTCTGAATGAAACCAGCCTGATCTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82671825 60 + 85787240 TCTTGTTCTTCAGCTTCCTTATGATTTTGCACTAGTCTGAATGAAACCAGCCTGATCTAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14398307 60 - 49578535 TCTTGTTCTTCAGCTTCCTTATTCTTTTGCACTAATCTGAATGAAACCAGCCTGATGTAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36480246 58 + 80974532 tttttttTTCCAGGTTCCTTAT--TTTTGCACTAATTTGCATTAAATCAACCTGATTGAA i canFam3.chr7 I 2 I 1999 e mm10.chr1 178894242 441 + 195471971 I a score=1350903.000000 s hg38.chr1_KI270759v1_alt 353629 428 + 425601 ACCTTGCATCTTTAGTGACAGATATGAGTCTGACACCCACCT---TCAACTTTGTGGTAGCCTGCCCAGCTTCCCAG-AGGACACCTTTGTGCCCGCAGGCTTCC--TGTGGCCATCGGATCCCCAATCTAAACTAGGATAAAGTATATGT-TTTGTGGTATTGTCACCTGTTTAGGATGAGAAGAGGCACTGAAGCTATAACCCTA------TTTTCTGAGCCAGATAAAATAGCAAACATATATTTGCTCTACTGGGTTATTTTGACAAATTTATCAAGCATCTTCAAAATATACAGTACTAGTCTAAGCATTAGGGCTAATGCAGAGAGCTTTTGCACCAGTAGGACAGAGGAAAAAATGTGCACAAATTAGAGTACAAGGCATAAAGCAGTT-AAAAGTCACATTATCAAGTACATTCAAGGAAAGAGGTAAGCAGTT s panTro4.chr1 225109365 428 + 228333871 ACCCTGCATCTTTAGTGATAGATATGAGTCTGACACCCACCT---TCAACTTTGTGGTAGCCTGCCTAGCTTCCCAG-AGGACACCTTTGTGCCCGCAGGCTTCC--TGTGGCCATCGGATCCCCAATCTAAACTAGGATAAAGTATATGT-TTTGTGGTATTGTCACCTGTTTAGGATGAGAAGAGGCACTGAAGCTATAACCCTA------TTTTCTGAGCCAGATAAAATAGCAAACATATATTTGCTCTACCGGGTTATTTTGACAAATTTATCAAGCATCTTCAAAATATACAGTACTAGTCTAAGCATTAGGGCTAATGCAGAGAGCTTTTGCACCAGTAGGACAGAGGAAAAAATGTACACAAATTAGAGTACAAGGCATAAAGCAGTT-AAAAGTCACATTATCAAGTACATTCAAGGAAAGAGGTAAGCAGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226482067 428 - 229942017 ACCCTGCATCTTTAGTAATAGATAGGAGTCTGACACCCACCT---TCAACTTTGTGGTAGCCTGCCCAGCTTCCCAG-AGGACACCTTTGTGCCCGCAGGCTTCC--GGTGGCCATCGGAGCCCCAATCTAAACTAGGATAAAGTATATGT-TTGGTGGTATTGTCACCTGTTTAGGATGAGAAGAGGCACTGAAGCTATAACCCTA------TTTTCTGAGCCAGATAAAATAGCAAACATATATTTGCTCTACCGGGTTATTTTGACAAATTTATCAAGCATCTTCAAAATATACAATACTAGTCTAAGCATTAGGGCTAATGCAGAGAGCTTTTGCACCAGTAGGACAGAGGAAAAAATGTACACAAATTAGAGTGCAAGGCATAAAGCAGTT-AAAAGCCACATTATCAAGTACATTCAAGGAAAGAGGTAAGCAGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140370022 425 - 143122389 ACCCTGCATCTTTAGTAATAGATGTGAGTCTGACACCCACCT---TCAACTTTGTGGTAGCCTGCCCAGCTTCCCAGAAGGACACCTTTGTGCCCACAGGCTTCC--TGTGGCCATCGGAGGCCCAATCTAAACTAGGATAAAGTATATGT-TTTGTGGTATTGTCACCTGTTTAGGATGAGAAGAGGCACTGAAGCTATAATCCTA------TTTTCTGAGCCAGATAAAATAGCAAAAATGTATTTGCTGTACCGGGTTATTTTGACAAATTTATCAAGCACCTTCAAAAT----AGTACTAGTGTAAGCATTAGGGCTAATGCAGAGAGCTTTTGCACCAGTAGGACAGAGGAAAAAATGTACACAAATTAGAGGGCAAGGCATAAAGCAGTT-AAAAGTCACATTATCAACTACATTCAAGGAAAGAGGTAAGCAATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17074045 427 - 229590362 ACCCTGCATCTTTAGTAATAGATATGAGTCTGACACCCACCT---TCAACTCTGTGGTAGCCTGTCCAGCTTCCCAG-AGGACACCTTTGTGCCCGCAGGCTTCC--TGTGGCCATTGGAACCCCATTCTAAACTAGGATAAAGTATATGT-TTTGTGGTATTGTCGCCTGTTTAGGATGAGAAGAGGCACTGAAGCTATAACCCTA------TTTTCTGAGCCAGATCAAATAGCAAAAATACATTTGTTCTACCGGGTTATTTTGACAAATTTATCAAGCATCTACAAAATATACAGTATTAGTCTAAGCATTAGGGCTGATGCAGAGAGCTTTTGCACCAGTAGGACAGAGGAAAACA-GTACACAAATTAGAGTGCAAGGCATAAAGCAGTT-AAAAGTCACATTATCAAGTACATTCAAGGAAAGAGGTAAGCAGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223838242 427 - 227556264 ACCCTGCATCTTTAGTAATAGATATGAGTCTGACACCCACCT---TCAACTCTGTGGTAGCCTGTCCAGCTTCCCAG-AGGACACCTTTGTGCCCGCAGGCTTCC--TGTGGCCATTGGAACCCCATTCTAAACTAGGATAAAGTATATGT-TTTGTGGTATTGTCGCCTGTTTAGGATGAGAAGAGGCACTGAAGCTATAACCCTA------TTTTCTGAGCCAGATCAAATAGCAAAAATACATTTGTTCTACCGGGTTATTTTGACAAATTTATCAAGCATCTACAAAATATACAGTATTAGTCTAAGCATTAGGGCTGATGCAGAGAGCTTTTGCACCAGTAGGACAGAGGAAAACA-GTACACAAATTAGAGTGCAAGGCATAAAGCAGTT-AAAAGTCACATTATCAAGTACATTCAAGGAAAGAGGTAAGCAGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16888367 426 - 220367699 ACCCTGCATCTTTAGTAATAGATATGAGTCTGACACCCACCT---TCAACTCTGTGGTAGCTTGCCCAGCTTCCCAG-AGGACACC-TTGTGCCCGCAGGCTTCC--TGTGGCCATCGGAGCCCCATTCTAAACTAGGATAAGGTGTATGT-TTTGTGGTGTTGTCGCCTGTTTAGGATGAGAAGAGGCACTGAAGCTATAACCCTA------TTTTCTGAGCCAGATcaaatagcaaaaatatatttgctCTGCCGGGTTATTTTGACAAATTTATCAAGCATCTAGAAAATATACAGTACTAGTCTAAGCATTAGGGCTGATGCAGAGAGCTTGTGCACCAGTAGGACAGAGGAAAACA-GTACACAAATTAGAGTGCAAGGCATAAAGCAGTT-AAAAGTCACATTATCAAGTACATTCAAGGAAAGAGGTAAGCAGTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82671885 427 + 85787240 ACCCTGCATCTTTAGTAATGGATATGAGTCTGACACCCACCT---TCAGCTCTGTGGTGGCCTGCCCAGCTTCCCAG-AGGTCGCCTTTGTGCCCGCAGGCTTCC--TGTGGCCATCGGAGCCCCGTCCTAAACTAGGATAAAGTATATGT-TTTGTGGTATTGTCGCCTGTTTAGGATGAGAAGAGGCACTGAAGCTATAACCCTA------TTTTCTGAGCCAGATCAAATAGCAAAAATACATTTGTTCTACCGGGTTATTTTGACAAATTTATCAAGCATCTACAAAATACACAGTACTAGTCTAAGCATTAGGGCTGATGCAGAGAGCTTTTGCACCAGTAGGACAGAGGAAAACA-GTACACAAATTAGAGTGCAAGGCATAACGCAGTT-AAAAGTCATATTATCAAGTACATTCAAGGAAAGAGGTAAGCAGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14398367 412 - 49578535 ACCCTGCATC-TTACTAATAGATACGAGTCAAATGCCCACTCTAGTCAACTTCTTGGTAGCCTGCCTAGCGTTCCAG-------------------CAGGCTTCC-TTGCAGCCATCAGAGCCCCATTCTAAACTAGTGTAAAGTATATGT-TTTGTGATACTGTCACCTGTTTAGGATGGGAAGAGGCACTGAAGCTGTAACCCTA------TTTTCTGAGCCAGATAAAATAGCAGAAGTAGATTTGCGCTACCAGGTTGTTTTGGCAAATCTATCAAGCATCTATAGAACATAGAGGACCAGTCTAAGCCTTAGGGCTAATGC--AGAGCCTCTGCGCCAGGAGGACAGAGGGAAAAAAGTACACAAATTAGTGTGCAAGGCATGAGGCAGTTAAAAAGTCACATCATCAAGTACATCCAAGGAAAGAGGTAAGCAGTT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36482303 382 + 80974532 ACCTTACTTCTTTAGTAGCTAATATGAGTCACACATCTAACT---TCAACTATTTGATTGCATGCCTCCCAACCCAG-AAGATACCTTTGGGCCACTAGACTTGCTTTGTAGCCACTAGAACCCCATTTTCAGC----ACAAAGTGTATCTCTTTGTGGTGATATCAGCTCTGGAGGGCT-GTAGAGGCATTGAAGCTACAGCCCTAGCCCTTGTTCCTGAATCAAA-GACAGAGCAAAAATAGATTCACTCCACCAGGTTACTCTGAC-AATTTGTCACACATCTGTGGTATATAAAATACCATTCTAAGCATTAGGGCTGATGCCCAGAGCTCACAGACCAGGAGGACAGA-GAAACCA-GTATGCAAGTGAGAGGACAAGGCATAA-GCGGTT---------------------------------------------- i canFam3.chr7 I 1999 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=400488.000000 s hg38.chr1_KI270759v1_alt 354057 141 + 425601 CCAGCAAGTAggccgggcgcggtggctcacgcctgtaatcccagcactttgagagcccaaggagggcggatcatttgaggtgaggagtttaagaccagactgaccaacatggcaaaacccaatatctactaaaaatac-aag s panTro4.chr1 225109793 141 + 228333871 CCAGCAAGTAggccgggcacggtggctcacgcctgtaatcccagcactttgagagcccaaggaaggcagatcatttgaggtgaggagtttaagaccagactgaccgacatggcaaaacccaatatctactaaaaatac-aag i panTro4.chr1 C 0 I 1 s ponAbe2.chr1 226482495 141 - 229942017 CCAGCAAGTAggctgggcgcggtggctcacgcctgtaatcccagcactttgagagcccaaggagggcgaatcatttgaggtcaggagtgtaagaccagactgaccaacatggcaaaacccaatatctactaaaaatca-aaa i ponAbe2.chr1 C 0 I 14 s nomLeu3.chr5 140370447 141 - 143122389 CCAGCAAGTAggctgggcgcggtgcctcacacctgtaatgccagcactttgggagcccaaggagggcagatcatttgaggtcaggagtttaagaccagactgaccaacatggcaaaacccaatatctactaaaaatac-aaa i nomLeu3.chr5 C 0 I 1 s rheMac3.chr1 17074472 142 - 229590362 CCAGCAGGTAggccgggcgcagtggctcatgcctataatcccgacattttgggagcccaaggagggcagatcatttgaggtcgagagtttaaaaccagactgaccaacatggcaaaacccaatatctactaaaaatacaaaa i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223838669 141 - 227556264 CCAGCAGGTAggccgggcgcagtggctcatgcctataatcccgacattttgggagcccaaggagggcagatcatttgaggtcgagagtttaaaaccagactgaccaacatggcaaaacccaatatctactaaaaatac-aaa i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16888793 141 - 220367699 CCAGgaggtaggccgggcgcagtggctcatgcctataatcccaacattttgggagcccaaggagggcagatcatttgaggtcgagAGTTTAaaaccagactgaccaacatggcaaaacccaatatctactaaaaatac-aaa i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82672312 141 + 85787240 CCAGCAGGTAggccgggcgcagtggctcatgcctataatcccaacattttgggagcccaaggagggcagatcatttgaggtcgggagtttaagaccagactgaccaacatggcaaaacccagtatctactaaaaatac-aaa i chlSab2.chr25 C 0 I 16711 s calJac3.chr19 14398779 141 - 49578535 CCAGCAGGCAAgccaggtgtggtggctcatgtgtgtaatcccagcactttgggaagccaaagcaggaggatcatttcaggtcagaagttcaagatcagcctgaccaacatagcaaaatcccatctctgctaaaaatac-aaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36482685 0 + 80974532 C a score=24312.000000 s hg38.chr1_KI270759v1_alt 354198 10 + 425601 -----------------------aaaaaaaaaa s panTro4.chr1 225109935 10 + 228333871 -----------------------aaaaaaaaaa i panTro4.chr1 I 1 C 0 s ponAbe2.chr1 226482650 10 - 229942017 -----------------------aagaaaaaaa i ponAbe2.chr1 I 14 C 0 s nomLeu3.chr5 140370589 10 - 143122389 -----------------------aaaaaaaaaa i nomLeu3.chr5 I 1 C 0 s rheMac3.chr1 17074615 10 - 229590362 -----------------------aaaaaaaaaa i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223838811 10 - 227556264 -----------------------aaaaaaaaaa i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16888935 10 - 220367699 -----------------------aaaaaaaaaa i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82689164 10 + 85787240 -----------------------aaaaaaaaaa i chlSab2.chr25 I 16711 C 0 s calJac3.chr19 14398920 33 - 49578535 aaaagaaaaaaaaaagaaagaaaagaaaaaaga i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36482685 0 + 80974532 C a score=82465.000000 s hg38.chr1_KI270759v1_alt 354208 31 + 425601 aaaagccaggcgtggtggaacatgcctgtaa s panTro4.chr1 225109945 30 + 228333871 aaaagccaggcgtg-tggaacatgcctgtaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226482660 31 - 229942017 aaaagccaggcgtggtggaacatgcctgtaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140370599 31 - 143122389 aaaagccaggcatggtggaacatgtctgtaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17074625 31 - 229590362 aattgccaggcgtggtggcacatgcttgtaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223838821 31 - 227556264 aattgccaggcgtggtggcacatgcttgtaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16888945 31 - 220367699 aaatgccaggcgtggtggcacatgcttgtaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82689174 31 + 85787240 aaaagccaagtggggtggcacatgcttgtaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14398953 31 - 49578535 aaaagctgggtgtggtggaatatgcctataa i calJac3.chr19 C 0 C 0 s canFam3.chr7 36482685 29 + 80974532 AGAAGTCA--CATTGTAGAGTATGTTTAAAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=349602.000000 s hg38.chr1_KI270759v1_alt 354239 121 + 425601 tctcagctactcaggagcctgaggcaggcgaatcgcttgaaccccgggaggtggaggttgcagtgagccgagatcacgccattgcactccagcctgggcaacagggcgagactccatctca s panTro4.chr1 225109975 121 + 228333871 tctcagctacttgggaggctgaggcagatgaatcgcttgaaccccgggaggtggaggttgcagtgagccgagatcacgccattgcactccagtctgggcaacagagcgagactccatctca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226482691 120 - 229942017 tctcagctactcgggaggctgaggcaggcaaattgcttgaa-cccgggaggtggacgttgcagtgagccgagatcacgccattgcactccagcctgggcaacagagcgagactccatctca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140370630 120 - 143122389 tctcagctactcaggaggctgaggcaggagaatcgcttgaa-cccgggaggtggaggttgcagtgagctgagatcacgccattgcactccagcctgggcaacagagcgaggctccatctca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17074656 120 - 229590362 tctcagctacttgtgaggctgaggcaggagactcgcttgaa-ccagggaggcggaggttgcagtgagcggagatcgtgccattgcactccagcctgggcaacagagcgagactccatctca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223838852 120 - 227556264 tctcagctacttgtgaggctgaggcaggagactcgcttgaa-ccagggaggcggaggttgcagtgagcggagatcgtgccattgcactccagcctgggcaacagagcgagactccatctca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16888976 120 - 220367699 tctcagctacttgtgaggctgaggcaggagaatcgcttgaa-ccagggaggtagaggttgcagtgagctgagatcgcgccattgcactccagcctgggcgacagagcgagactccatctca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82689205 120 + 85787240 tctcagctacttgtgaggctgaggcaggagaatcgcctgaa-ccagggaggtggaggttgcagtgagcggagatcgcgccactgcactccagcctgggcaacagagcgagactccatctca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14398984 118 - 49578535 tctcagctactcgggaggctgaggcagaagaatcgcttgaa-cccgggaggtagaggttgcagtgagccaagattgtgccactgcactccagcctgggctacagagcaataatccatct-- i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36482714 0 + 80974532 C a score=576909.000000 s hg38.chr1_KI270759v1_alt 354360 179 + 425601 gaaaaaaaaaGTTCCAGCAAGTCAGCTGTGAATATTTTTTCTATGG---C-------AATAATAATAAACACAAGATGCAGGTATAGATTCCTATTTATGACTACAACTCTCCACATGTCTAGAATTTGGTGGAAGCAAATAGGTCTTAGAATTTACCCCAAAGCTTGAATTACTGAAACTGCCTGTTA s panTro4.chr1 225110096 179 + 228333871 gaaaaaaaaaGTTCCAGCAAGTCAGCTGTGAATATTTTTTCTATGG---C-------AATAATAATAAATACAAGATGCAGGTATAGATTCCTATTTATGACTACAACTCTCCACATGTCTAGAATTTGGTGGAAGCAAATAGGTCTTAGAATTTACCCCAAAGCTTGAATTACTGAAACTGCCTGTTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226482811 178 - 229942017 g-aaaaaaaaGTTCCAGGAAGTCAGCTGTGAATATTTTTTCTATGG---C-------AATAATAATAAACATAAGATGCGGGTATAGATTCCTATTTATGACTACAACTCTCCACATGTCTAGAATTTGGTGGAAGCAAATAGGTCTTAGAATTTACCCCAAAGCTTGAATTACTGAAACTACCTGTTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140370750 179 - 143122389 gaaaaaaaaaGTTCCAGCAAGTCATCTGTGAATATTTTTTCTATGA---C-------AATAATAATAAATACAAGATGCAGGTATAGATTCCTATTTATGACTACAGCTCTCCACGTGTCTAGAATTTGGTGGAAGCAAATATGTCTTAGAATTTACCCCAAAACTTAAATTACTGAAACTACCTGTTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17074776 178 - 229590362 g-aaaaaaaaGTTCCAGCAAGTCATCTGTGAGTATTTTTTCTATGG---C-------AATAATAATAAATGCAAGATGCAGGTATAGATTCCCATTTAGTGCTACAGCTCTCCACGTGTCTAGAATTTGGCAGAAGCAAATATGTCATAGAATTTACCCCAAAGCTTGAGTTACTGAAACTACCTGTTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223838972 178 - 227556264 g-aaaaaaaaGTTCCAGCAAGTCATCTGTGAGTATTTTTTCTATGG---C-------AATAATAATAAATGCAAGATGCAGGTATAGATTCCCATTTAGTGCTACAACTCTCCACGTGTCTAGAATTTGGCAGAAGCAAATATGTCATAGAATTTACCCCAAAGCTTGAGTTACTGAAACTACCTGTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16889096 177 - 220367699 g--aaaaaaagttcCAGCAAGTCATCTGTGAGTATTTTTTCtatgg---c-------aataataataaaagcaagatgCAGGCATAGATTCCCATTTAGTGCTACAACTCTCCACGTGTCTAGAACTTGGCAGAAGCAAATATGTCATAGAATTTACCCCAAAGCTTGAGTTACTGAAACTACCTGTTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82689325 177 + 85787240 g--aaaaaaaGTTCCAGCAAGTCATCTGTGAATATTTTTTCTATGG---C-------AATAATAAAAAATGCAAGATGCAGGTATAGATTCCCATTTAGTACTACAGCTCTCCACATGTCTAGAATTTGGCAGAAGCAAATATGTCATAGAATTTACCCCAAAGCTTGAGTTACTGAAACTACCTGTTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14399102 180 - 49578535 --aaaaaaaTGTTCCGGCAAGTCATCTGTGAATATTTTTCCTATGGCAAC-------AATAATAATAACTATAAGATGCAGGTATAGATTTCTGTTTACTACTACAGCTCTCTGAGTGTCTAGAATTTAATGGAAGCAAATATGTCTTAGAAGTTACCCCAAAGGTTGAGTTACTGAAAATATCTATTG i calJac3.chr19 C 0 I 492 s canFam3.chr7 36482714 179 + 80974532 GAAATACAAAGTTCCAGTATGTCATCTGTGAATATATTCTCTACGG---CAGTGATAAATAATAATAAATATAAGATACAG---TAGATT----TTCACTATTATAACTCTCCAGATGTCTAGAATTTTGTGGAAGCAAATACGTCTTAGAGTTCATTCAAGAGGTTTAGTTACTTAAATTCTCTCTTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=1357638.000000 s hg38.chr1_KI270759v1_alt 354539 449 + 425601 GTAATAGTCA-TTTATCACATGGATTTGGCGCTGGTGTCCTGAGGATCTAAGTA-CAGGGGAGTTCTGGGCATGCATTAGTGCTCTAAGGAGAGGCCTTC------GCTGGTTAATGTCCCCAGGTTTGGG-TTGGTAGCCTACCATTT----------------GGTATCAT----------------------------------------------------------------------------------------------------ACTGAGCTCCCT-----------------------------------AATTTTGAGCTACATCTAGAAGACCACGTG-CCTGGTGCCAAGAAGGACACTTAGACTATGTGTGGATGGAGCTTCATCAGCTGTTCTAATGAACGTTTTGCAAAAGACCATT----GTGAGTGAGATGGGAGTTTCTCTGTTTTCAAGCCCAGGGCCCTGCCTGCTGGTGTGTCCCTCTTCTGAGTCATTCAGCCTTGACCCACTCTAGGGAACCGGAGGAATCCACAGCCCAGAGCTCTCCCATGGTGGCCTGTTTGACAGTCACATTCTGAAAAAGCAAA-CCTCTTGGCTT s panTro4.chr1 225110275 449 + 228333871 GTAATAGTCA-TTTATCACATGGATTTGGCGCTGGTGTCCTGAGGATCTAAGTA-CAGGGAAGTTCTGGGCATGCATTAGTGCTCTAAGGAGAGGCCTTT------GCTGGTTAATGTCCCCAGGTTTGGG-TTGGTAGCCTACCATTT----------------GGTATCAT----------------------------------------------------------------------------------------------------ACCGAGCTCCCT-----------------------------------AATTTTGAGCTACATCTAGAAGACCACGTG-CCTGGTGCCAAGAAGGACACTTAGACTATGTGTGGATGGAGCTTCATCAGCTGTTCTCATGAACGTTTTGCAAAAGACCATT----GTGAGTGAGATGGGAGTTTCTCTGTTTTCAAGCCCAGGGCCCTACCTGCTGGTGTGTCCCTCTCCTGAGTCATTCAGCCTTGACCCACTCTAGGGAACCGGAGGAATCCACAGCCCAGAGCTCTCCCATGGTGGCCTGTTTGACAGTCACATTCTGAAAAAGCAAA-CCTCTTGGCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226482989 449 - 229942017 GTAATAGTCA-TTTATCACATGGATTTGGCGCTGGTGTCCTAAGGATATAAGTA-CAGGGAAGTTCTGGGCATGCATTAGTGCTCTAAGGAAAGGCCTTC------GCTGGTTAATGTCCCCAGGTTTGGG-TTGGTAGCCTACCATTT----------------GGTATCAT----------------------------------------------------------------------------------------------------ACTGAGCTCCCT-----------------------------------AATTTTGAGCTACATCTAGAAGACCATGTG-CCTGGTGCCAAGAGGGACACTTAGACTATGTGTGGATGGAGCTTCATCAGCTGTTCTAATGAACGTTTTGCAAAAGACCATT----GTGAGTGAGATGGGAGTTTCTCTGTTTTCAAGCCCAGGACCCTGCCTGCTGGTGTGTCCCTCTTCTGAGTCATTCAGCCTTGACCCACTCTAGGGAACCGGAGGAATCCACAGCCCAGAGCTCTCCGATGGTGGCCTGTTTGACAGTCACATTCTGAAAAAGCAAA-CCTCTTGGCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140370929 453 - 143122389 GTAATAGTCA-TTTATCACATGGATTTGGCGCTGGTATCCTAAGGATATAAGTA-CAGGGAAGTTCTGGGCATGCATTCGCGCTCTAAGGAAAGGCCTTC------ACTGGTTCATGTCCCCGGGTTTGGG-GTGGTAGCCTACCGTTT----------------GATATCAT----------------------------------------------------------------------------------------------------ACTGAGCTCCCT-----------------------------------AATTTTGAGCTACATCTAGAAGACCATGTG-CCTGGTGCCAAGAAGGACACTTAGACTATGCGTGGATGGAGCTGCATCAGCCGTTCTCATGAACGTTTTGCAAAAGACCATTGTGAGTGAGTGAGATGGGAGTTTCTCTGTTTTCAAGCCCAGGACCCTGACTGCTGGTGTGTCCCTCTTCTGAGTCATTCAGCCTTGACCCACTCTAGGGAACCAGAGGAATCCGCAGCCCAGAGCTCTCCCACGGTGGCCTGTTTGACGGTCACATTCTGAAAAAGCAAA-CCTCTTGGCTT i nomLeu3.chr5 C 0 I 680 s rheMac3.chr1 17074954 452 - 229590362 GTAATAGTCA-TTTATCACATGGATTTGGCGCTGGTGCCCTAAGGATATAAGTA-CAGGGAAGCTCTGGGCATGCATTAGAGCTCTAAGGAAGGGCCTTC------ACTGGTTCATGTCCCCAGGTTTGGG-ATGGCAGCTTACCATTT----------------GATATCAT----------------------------------------------------------------------------------------------------ACTGAACTCCCT-----------------------------------AATTTTGAACTACATCTAGAACACCATGTG-CCTGGTGCCAAGAAGGACACTTAGGCTATGTGTGGATGGAGTTTCATCAGCTGTTCAAATGAACGTTTTGC--AAGACCATTGTGAGTGAGTGAGATGGGAGTTTCTCTGTTTTCAAGCCCAGGACCCTGCCTGCTGGCATGTCCCTCTTCTGAGTCATTCAGTCTTGACCCACTCGAGGGAACCGGCGGAATCCGCAGCCCAGAGCTCGCCCACGGTGGCCTGTTTGACAGTCACATTCTGAAAAAGCAAAGCTTCTTGGCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223839150 452 - 227556264 GTAATAGTCA-TTTATCACATGGATTTGGCGCTGGTGCCCTAAGGATATAAGTA-CAGGGAAGCTCTGGGCATGCATTAGAGCTCTAAGGAAGGGCCTTC------ACTGGTTCATGTCCCCAGGTTTGGG-ATGGCAGCTTACCATTT----------------GATATCAT----------------------------------------------------------------------------------------------------ACTGAACTCCCT-----------------------------------AATTTTGAACTACATCTAGAACACCATGTG-CCTGGTGCCAAGAAGGACACTTAGGCTATGTGTGGATGGAGTTTCATCAGCTGTTCAAATGAACGTTTTGC--AAGACCATTGTGAGTGAGTGAGATGGGAGTTTCTCTGTTTTCAAGCCCAGGACCCTGCCTGCTGGCATGTCCCTCTTCTGAGTCATTCAGTCTTGACCCACTCGAGGGAACCGGCGGAATCCGCAGCCCAGAGCTCGCCCACGGTGGCCTGTTTGACAGTCACATTCTGAAAAAGCAAAGCTTCTTGGCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16889273 449 - 220367699 GTAATAGTCA-TTTATCACATGGATTTGGCACTGGTGCCCTAAGGATATAAGTA-CAGGGAAGCTCTGGGCATGCATTAGAGCTCTAAGGAAAGGCCTTC------ACTGGTTCATGTCCCCAGGTTTGGG-ATGGCAGCCTACCATTT----------------GATATCAT----------------------------------------------------------------------------------------------------ACTGAACTCCCT-----------------------------------AATTTTGAGCTACATCTAGAAGACCATGTG-CCTGGTGCC---AAGGACACTTAGGCTATGTGTGGATGGAGTTTCATCAGCTGTTCAAATGAACGTTTTGC--AAGACCATTGTGAGTGAGTGAGATGGGAGTTTCTCTGTTTTCAAGCCCAGGACCCTGCCTGCTGGCATGTCCCTCTTCTGAGTCATTCAGTCTTGACCCACTCGAGGGAACCGGCGGAATCCGCAGCCCAGAGCTCACCCACGGTGGCCTGTTTGACAGTTGCATTCTGAAAAAGCAAAGCTTCTTGGCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82689502 452 + 85787240 GTAATAGTCA-TTTATCATATGGATTTGGCGCTGGTGCCCTAAGGATATAAGTA-CACGGAAGCTCTAGGCATGCATTAGAGCTCTAAGGAAAGGCCTTC------ACTGGTTCATGTCCCCAGGTTTGGG-ATGGCAGCCTACCATTT----------------GATATCAT----------------------------------------------------------------------------------------------------ACTGAGCTCCCT-----------------------------------AATTTTGAACTACATCTAGAAGACCATGTG-CCTGGTGCCAAGAAGGACACTTAGGCTGTGTGTGGATGGAGTTTCATCAGCTGTTCAAATGAACGTTTTGC--AAGACCCTTGTGAGTGAGTGAGATGGGAGTGTCTCTGTTTTCAAGCCCAGGACCCTGCCTGCTGGCATGTCCCTCTTCTGAGTCATTCAGTCTTGACCCACTCGAGGGAACCAGCGGAATCCGCAGCCCAGAGCTCACCCACGGCGGCCTGTTCGACAGTCACATTCTGAAAAAGCAAAGCTTCTTGGCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14399774 433 - 49578535 ATAATAGTCA-TTTATCATGTGGATCTGTAGCTGGTGCCCTAAGGATGTAAGT-----------TCTGGGACTGCATTAGAGCTCTAAGAAGAGGCTGAG------ACTGGCTAATGT-CCCAGATTTGGG-ACGGAAGCCTACCACTT----------------GATACAGT----------------------------------------------------------------------------------------------------TATGAGCTCCCT-----------------------------------AATTTTGAGCTGCATGTGGAAGACCATG-----CGGTGCCAAGAAGG--AGTTAGGCTCTGTGTGGATGGAGCTTCATCAGCTGTCCTCATTATCGTTTTGC--AAGGTCATTGTGAGTGAGTGAGATGGGAGTTTCTCTATTTTCAAGCCCAGGACCCTGCCTGCAGGCACTTCCCTCTTCTGATTAGTTCAGCCTTGACCCACTCTAGGGAACCGGAGAAAT-CGCAGCCCGCAGCTCTCTCACCATGGCCTGTTTGACAGCCACATTCTGAAAAAGCAAA-CCTCTTGGCTT i calJac3.chr19 I 492 C 0 s canFam3.chr7 36482893 576 + 80974532 ATAATAGGCATTTTATTGCATGGCTTTGGAGTTGATGCCCTAAGGGTCTAAGTCTTAGGGGCATTCCAGGAATGTGTTAGAACTCTAATGAAAGGCTGCCCTTGTGGCCAGCTAATATCCCCAGATTTGGGAATGGCCACCCATCTTTTTTTTTtttttttttaagattttatttatttattcatgagagacacacagagaaaggcagagacataggcagagggaaagcaggacctcgggatcagatcctgagccaaaagcagatgctcaaccactgagccacccaggcttcccGCGGCCCATTTTTTGACAATAATATAAATTTTAAGCAACACCCAGAAGACCCTGTATCCTGGTGCCAAAGAGGAC----AAGCTACATGTGGATGGGGCTTTGTCAGCTCTCATGATTAACTTTCTAC--A------------CTGGGTGAAATGACAGTCTCTCTG-TGTAAAGCCCAGGAAAGTGCTTGCAGGCCTTTCTCATTTCTGGCTT-CTGAGCCTCTA-CCACCGTAGGGAA-TGGACAGATCCACAACCCAGAGCCC----------------TTGACAATCAAATTCTGAAAAAGCAAA-CGAGCCCACTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=267271.000000 s hg38.chr1_KI270759v1_alt 354988 90 + 425601 GA--TTTCTTGCTGGAATAATGAAACCCAGCTCGGCCCCTGCTTGATAATTGCCTTTGGGAAAAAGGTAATAGCCACCTTGAAACACCATTC s panTro4.chr1 225110724 90 + 228333871 GA--TTTCTTGCTGGAATAATGAAACCCAGCTCGGCCCCTGCTTGACAATTGCCTTTGGGAAAAAGGTAATAGCCACCTTGAAACACCATTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483438 90 - 229942017 GA--TTTCTTGCTGGAATAATGAAACCCAGCTCGGCCCCTGCTTGACAATTGCCTTTGGGAAAAAGGTAATAGCCACCATGAAGCACCATTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372062 90 - 143122389 GA--TTTCTTGCTGGAATAATGAAACCCAGCTCAGCCCCTGCTTGACAATTGCCTTTGGGAAAAAGGTAATAGCCACCTTGAAACACCATTC i nomLeu3.chr5 I 680 C 0 s rheMac3.chr1 17075406 83 - 229590362 GA--TTTCCTGCTGGAATAATGAAA-------CGGCCCCTGCTTGACAATATCCTTGGGGGAAAAGGTAATAGCCACCTTGAAACACCATTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223839602 83 - 227556264 GA--TTTCCTGCTGGAATAATGAAA-------CGGCCCCTGCTTGACAATATCCTTGGGGAAAAAGGTAATAGCCACCTTGAAACACCATTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16889722 83 - 220367699 GA--TTTCTTGCTGGAATCATGAAA-------CGGCCCCTGCTTGACAATATCCTTGGGGAAAAAGGTAATAGCCACCTTGAAACACCATTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82689954 85 + 85787240 GATTTTTCCTGCTGGAATCATGAAA-------CGGCCCCTGCTTGACAATATCCTTGGGGAAAAAGGTAATAGCCACCTTGAAACACCATTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14400207 90 - 49578535 GA--TTTCTTGCTGTAATAATGAAACTCCACTCTGCCTCTGCTCGACAGTTTCCTTTGGGAAAAAGGTAATAGCTACCTTGAAACACCATTC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36483469 78 + 80974532 GA--TTCCTTACTGGAATAATGAAA-----------GCCATCTTGACGATTTCCTTT-GCAAAAGGAAACTAGCCACCTTTAAAAAATATAC i canFam3.chr7 C 0 I 213 e mm10.chr1 178894242 441 + 195471971 I a score=700893.000000 s hg38.chr1_KI270759v1_alt 355078 228 + 425601 AGTTGGACCTTTCCAAAAGCCACGGG---TTTTTCTTCACCAAAGTCCTTCATTTGAGCCTATAATCTGTGAATGGAAAGA----AGCGATGA-TGCCTCTAAAAGCCTTTTGGTTGGAGTCAGAGTCACCCTTTGAGCACTGAGTTCTCTTTCCAGGGACCT-------------CTCCCATGTGGTCTTGGAGCCATGGGTGTTGTACAAAAGCAACAGGCCTAGCAGAGCTACCAGTGTGTGAGCG s panTro4.chr1 225110814 228 + 228333871 AGTTGGACCTTTCCAAAAGCCACGGG---TTTTTCTTCACCGAAGTCCTTCATTTGAGCCTATAATCTGTGAATGGAAAGA----AGCGATGA-TGCCTCTAAAAGCCTTTTGGTTGGAGTCAGAGTCACCCTTTGAGCACTGAGTTCTCTTTCCAGGGACCT-------------CTCCCGTGTGCTCTTGGAGCCATGGGTGTTGTACAAAAGCAACAGGCCTAGCAGAGCTACCAGTGTGTGAGCG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483528 227 - 229942017 AGTTGGACCTTTCCAAAAGCCACGGG---TTTTTCTTTACCAAAGTCCTTCATTTGAGCCTATAATCTGTGAATGAAAAGA----AGCGATGA-TTCCTCTAAAAGCCTTTTGGTTGGAGTCAGAGTCACCCTTTGAGCATTGAGTTCT-TGTCCAGGGACCT-------------CTCCTATATCGTCTTGGAGTCATGGGTGTTGTACAAAAGCAACAGGCCTAGCAGAGCTACCAGCGTGTGAGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372152 225 - 143122389 AGTTGGACCTTTCCAAAAGCCACAGG---TTTTTCTTCACCAAAGTCCTTCATTTGAGCCTATAATCTGTGAATGAAAAGA------CGATGA-TTCCTCTAAAGGCCTTTTGGTTGGAGTCAGAGTCACCCTTTGAGCCTTGAGTTCTCTGTCCAGGGACCT-------------CTCCCACATGGTCTTGGAGTCATGGATGTTGTGC-AAAGCAACAGGCCTAGCAGAGCTACCAGCCTGGGAGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17075489 230 - 229590362 AGTTTGACCTTTCCGAAAGCCAAGGGGTTTTTTTTTTCACCAAAGTCCTTCATTTGAGCCTATAGTCTGTGAATGAAAAGA----AGTGATGA-TTCCTGTAAAAGCCTTGTGGTTGGAGTCAGAGTCCACCTTTGAGCACTGAGTTCTCTGTCCAGGGACCT-------------CTCC-ACGTGGTCTTGGAGTCATGGGCATTGTACAAAAGCAACAAGCCTCGCAGAGCTGCCAGCGTGTGAGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223839685 229 - 227556264 AGTTTGACCTTTCCGAAAGCCAAGGGG-TTTTTTTTTCACCAAAGTCCTTCATTTGAGCCTATAGTCTGTGAATGAAAAGA----AGTGATGA-TTCCTGTAAAAGCCTTGTGGTTGGAGTCAGAGTCCACCTTTGAGCACTGAGTTCTCTGTCCAGGGACCT-------------CTCC-ACGTGGTCTTGGAGTCATGGGCATTGTGCAAAAGCAACAAGCCTCGCAGAGCTGCCAGCGTGTGAGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16889805 227 - 220367699 AGTTTGACCTTTCCAAAAGCCAAGGG---ttttttttCACCAGAGTCCTTCATTTGAGCCTATAGTCTGTGAATGAAAAGA----AGTGATGA-TTCCTGTAAAAGCCTTGTGGTTGGAGTCAGAGTCCGCCTTTGAGCGCTGAGTTCTCTGTCCAGGGACCT-------------CTCC-ACGTGGTCTTGGAGTCATGGGCATTGTACAAAAGCAACAAGCCTCGCAGAGCTGCCAGCGTGTGAGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82690039 226 + 85787240 AGTTTGACCTTTCCAAAAGCCAAGCG---TTTTTTTCCACCAAAGTCCTTCATTTGAGCCTATAGTCTGTGAATGAAAAGA----AGTGATGA-TTCCTGTAGAAGCCTTGTGGTTGGAGTCAGAGTCC-CCTTTGAGCACTGAGTTCTCTGTCCAGGGACCT-------------CTCC-ACGTGGTCTTGGAGTCATGGACGTTGTACAAAAGCAACAAGCCTCGCAGAGTTGCCAGCATGTGAGTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14400297 228 - 49578535 AGTTTGACCTTTCCAAAACCCAAGGC---TTTTTCTTCACTAAAGTCATTCATTTGAGTCTGTAATCTGTAAATGAAAAGA----AGTGATTA-TTCCTCTAAAAGCCTTCAGGTTGGCATCAGAGTCACCCTTTGGGCAATGAGTCCTCTGTCCAGGGACAT-------------ATCCCACGTGGTCTTGGAGTCATGGGTGTGGTGCAAAAGCAGTAAGCCTAGCAGGGCTCCCACCCTGTGGGAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36483760 239 + 80974532 AATTTGACCTTTCCAAAAGCCAAAGG----CTCTCCTCACCA---TCATTTATTTGAGCCTATAATGTGTAAATGCAAAGAACTGAGTGATTATTTTCTCTAAACACCTTCTGGATGGAGTCAGAATCTCTCTTATGTCATTAAGTCCTCTGTTCAGGGACCCATTTAAGGACCCACTTC-ACATGGTCTTGGAACCATGGGTTTTGTACAAAAGCAATGag--tagcaaagctaccactttttgagta i canFam3.chr7 I 213 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=16052.000000 s hg38.chr1_KI270759v1_alt 355306 5 + 425601 TTTGC s panTro4.chr1 225111042 5 + 228333871 TTTGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483755 5 - 229942017 TTTGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372377 5 - 143122389 CTTGC i nomLeu3.chr5 C 0 T 20 s rheMac3.chr1 17075719 5 - 229590362 TTTGC i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16890032 5 - 220367699 TTTGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82690265 5 + 85787240 TTTGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14400525 5 - 49578535 TTTGC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36483999 5 + 80974532 tttgc i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e macFas5.chr1 223839914 0 - 227556264 C a score=-360.000000 s hg38.chr1_KI270759v1_alt 355311 1 + 425601 T s panTro4.chr1 225111047 1 + 228333871 T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483760 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17075724 1 - 229590362 C i rheMac3.chr1 C 0 I 1 s papAnu2.chr1 16890037 1 - 220367699 C i papAnu2.chr1 C 0 T 20 s chlSab2.chr25 82690270 1 + 85787240 C i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14400530 1 - 49578535 T i calJac3.chr19 C 0 I 1 s canFam3.chr7 36484004 1 + 80974532 t i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e macFas5.chr1 223839914 0 - 227556264 C e nomLeu3.chr5 140372382 20 - 143122389 T a score=34130.000000 s hg38.chr1_KI270759v1_alt 355312 37 + 425601 GTGTGAGCCCAGGCTTTCCACAGGACGAAGATTCTCT s panTro4.chr1 225111048 37 + 228333871 GTGTGAGCCCAGGCTCTCCACAGGACGAAGATTCTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483761 37 - 229942017 GTGTGAGCCCAGGCTCTCTACAGGACGAAGATTCTGT i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17075726 37 - 229590362 GGGTGAGCCCAGTCTCTCTGCAGGACGAGGATTctct i rheMac3.chr1 I 1 I 207 s chlSab2.chr25 82690272 37 + 85787240 GGGCGAGCCCAGTCTCTCTGCAGGACGAGGATTctct i chlSab2.chr25 I 1 I 351 s calJac3.chr19 14400532 37 - 49578535 GTGTGAGCCCAGTCTCTCTATGAGACGAAGATTctct i calJac3.chr19 I 1 T 52 s canFam3.chr7 36484005 1 + 80974532 -----------------------------g------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e papAnu2.chr1 16890038 20 - 220367699 T e macFas5.chr1 223839914 0 - 227556264 C e nomLeu3.chr5 140372382 20 - 143122389 T a score=38.000000 s hg38.chr1_KI270759v1_alt 355349 1 + 425601 C s panTro4.chr1 225111085 1 + 228333871 C i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483798 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484006 0 + 80974532 C e calJac3.chr19 14400569 52 - 49578535 T e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I e papAnu2.chr1 16890038 20 - 220367699 T e macFas5.chr1 223839914 0 - 227556264 C e nomLeu3.chr5 140372382 20 - 143122389 T a score=7339.000000 s hg38.chr1_KI270759v1_alt 355350 33 + 425601 ACCAGAGTGTGAGCATTTGC------------------------------------------------------------AGTGTGAGCCCAG s panTro4.chr1 225111086 33 + 228333871 ACCAGAGTGTGAGCATTTGC------------------------------------------------------------AGTATGAGCCCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483799 93 - 229942017 ACCAGCGTGTGAGCATTTGCAGTGTGAGCCCAGGCTCTCTACAGGACGAAGATTCTCTCACCAGCGTGTGAGCATTTGCTAGTGTGAGCCCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372362 33 - 143122389 ACCAGCCTGGGAGCACTTGC------------------------------------------------------------AGTGTGAGCCCAG i nomLeu3.chr5 T 20 C 0 s canFam3.chr7 36484006 13 + 80974532 --------------------------------------------------------------------------------agtgcacgttcag i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e calJac3.chr19 14400569 52 - 49578535 T e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I e papAnu2.chr1 16890038 20 - 220367699 T e macFas5.chr1 223839914 0 - 227556264 C a score=24112.000000 s hg38.chr1_KI270759v1_alt 355383 58 + 425601 GCTCTCTACAGGACGAAGATTCTCTTACCAGCATGTGAACATTTGC------------------------------------------------------------AGTGTGAGCCCA s panTro4.chr1 225111119 118 + 228333871 GCTCTCTACAGGATGAAGATTCTCTTACCAGCATGTGAACATTTGCAGTGTGAGCCCAGGCTCTCCACAGGACGAAGATTCTCTCACCAGCGTGTGAGCATTTGCTAGTGTGAGCCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483892 58 - 229942017 GCTCTCTACAGGACGAAGATTCTCTCACCAGCATGTGAGCATTTGC------------------------------------------------------------AGTGTGAGCCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372395 58 - 143122389 GCTCTCTACAGGACGAAGATTCTCTTACCAGCCTGGGAGCATTTGC------------------------------------------------------------AGTGTGAGCCCA i nomLeu3.chr5 C 0 T 59 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484019 0 + 80974532 C e calJac3.chr19 14400569 52 - 49578535 T e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I e papAnu2.chr1 16890038 20 - 220367699 T e macFas5.chr1 223839914 0 - 227556264 C a score=15285.000000 s hg38.chr1_KI270759v1_alt 355441 28 + 425601 GGCTCTCTACAGGACGAAGATTCTCTCA s panTro4.chr1 225111237 28 + 228333871 GGCTCTCCACAGGACGAAGATTCTCTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483950 28 - 229942017 GGCTCTCTACAGGACGAAGATTCTCTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372394 28 - 143122389 GGCTCTCTACAGGACGAAGATTCTCTTA i nomLeu3.chr5 T 59 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484019 0 + 80974532 C e calJac3.chr19 14400569 52 - 49578535 T e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I e papAnu2.chr1 16890038 20 - 220367699 T e macFas5.chr1 223839914 0 - 227556264 C a score=3335.000000 s hg38.chr1_KI270759v1_alt 355469 6 + 425601 CCAGAG s panTro4.chr1 225111265 6 + 228333871 CCAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483978 6 - 229942017 CCAGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372422 6 - 143122389 CCAGCC i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16890018 6 - 220367699 CCAGCG i papAnu2.chr1 T 20 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484019 0 + 80974532 C e calJac3.chr19 14400569 52 - 49578535 T e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I e macFas5.chr1 223839914 0 - 227556264 C a score=5262.000000 s hg38.chr1_KI270759v1_alt 355475 8 + 425601 --TGTGAGCA s panTro4.chr1 225111271 8 + 228333871 --TGTGAGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483984 8 - 229942017 --TGTGAGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372428 8 - 143122389 --TGGGAGCA i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16890024 8 - 220367699 --TGTGAGTG i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14400517 8 - 49578535 TGTGGGAG-- i calJac3.chr19 T 52 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484019 0 + 80974532 C e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I e macFas5.chr1 223839914 0 - 227556264 C a score=9933.000000 s hg38.chr1_KI270759v1_alt 355483 5 + 425601 TTTGC s panTro4.chr1 225111279 5 + 228333871 TTTGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483992 5 - 229942017 TTTGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372436 5 - 143122389 TTTGC i nomLeu3.chr5 C 0 T 59 s macFas5.chr1 223839914 5 - 227556264 TTTGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16890032 5 - 220367699 TTTGC i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14400525 5 - 49578535 TTTGC i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484019 0 + 80974532 C e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I a score=398.000000 s hg38.chr1_KI270759v1_alt 355488 1 + 425601 T s panTro4.chr1 225111284 1 + 228333871 T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483997 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 s macFas5.chr1 223839919 1 - 227556264 C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16890037 1 - 220367699 C i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14400530 1 - 49578535 T i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484019 0 + 80974532 C e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I e nomLeu3.chr5 140372441 59 - 143122389 T a score=58314.000000 s hg38.chr1_KI270759v1_alt 355489 43 + 425601 AGTGTGAGCCCAGGCTCTCTACAGGACGAAGATTCTCTTACCA s panTro4.chr1 225111285 43 + 228333871 AGTGTGAGCCCAGGCTCTCTACAGGACGAAGATTCTCTAACCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226483998 43 - 229942017 AGTGTGAGCCCAGGCTCTCTACAGGACGAAGATTCTGTTACCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372382 43 - 143122389 AGTGTGAGCCCAGGCTCTCTACAGGACGAAGATTCTCTTACCA i nomLeu3.chr5 T 59 C 0 s macFas5.chr1 223839920 28 - 227556264 AGGGTGAGCCCAGTCTCTCTGCAGGACG--------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16890038 43 - 220367699 AGGGTGAGCCCAGTCTCTCTGCAGGACGAGGATTCTCTTTTCA i papAnu2.chr1 C 0 T 43 s calJac3.chr19 14400531 43 - 49578535 GGTGTGAGCCCAGTCTCTCTATGAGACGAAGATTctcttttca i calJac3.chr19 C 0 I 1293 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484019 0 + 80974532 C e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I a score=1428.000000 s hg38.chr1_KI270759v1_alt 355532 16 + 425601 GCA-----------------------------------------------------------TGTGAGCATTTGC s panTro4.chr1 225111328 16 + 228333871 GCA-----------------------------------------------------------TGTGAGCATTTGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226484041 75 - 229942017 GCATGTGAGCATTTGCAGTGTGAGCCCAGGCTCTCTACAGGACGAAGATTCTGTTACCAGCGTGTGAGCATTTGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372425 16 - 143122389 GCC-----------------------------------------------------------TGGGAGCATTTGC i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484019 0 + 80974532 C e calJac3.chr19 14400574 1293 - 49578535 I e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I e papAnu2.chr1 16890081 43 - 220367699 T e macFas5.chr1 223839948 0 - 227556264 C a score=10754.000000 s hg38.chr1_KI270759v1_alt 355548 15 + 425601 AGTGTGAGCCCAGGC s panTro4.chr1 225111344 15 + 228333871 AGTGTGAGCCCAGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226484116 15 - 229942017 AGTGTGAGCCCAGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372441 14 - 143122389 AGTGTGAGCCCA-GC i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16890038 15 - 220367699 AGGGTGAGCCCAGTC i papAnu2.chr1 T 43 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484019 0 + 80974532 C e calJac3.chr19 14400574 1293 - 49578535 I e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I e macFas5.chr1 223839948 0 - 227556264 C a score=173708.000000 s hg38.chr1_KI270759v1_alt 355563 200 + 425601 TCTCCACAGGACAAAGATTCTCTTTTCACCCTCACGTCAACCTCACGTCAAGATGGGAGATAAAGAATAGCAAAATAGGGCTGGGTGTAAGCTCTGGATAGCTTCTTCGggtatccagggatagatgctgtgattactcctattttatagatgaagaaacagatgaaaggagccc--------------acgtcccatgcacgatac-tggcaag s panTro4.chr1 225111359 200 + 228333871 TCTCCATAGGACAAAGATTCTCTTTTCACCCTCACGTCAACCTCACGTCAAGATGGGAGATAAAGAATAGCAAAATAGGGCTGGGTGTAAACTCTGGATAGCTTCTTCAGGTATCCAgggatagatgctgtgattactcctattttatagatgaagaaacagatgaaaggagccc--------------acgtcccatgcacgatac-tggcaag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226484131 191 - 229942017 TCTCTACAGGACGAAGATTCTCTTTTCACCCTCACGTCAACCTCACGTCAAGATGGGAGATAAAGAATAGCAAAGTAGGGCTGGGTGTAAACTCTGGATACCTTCTTCaggtatccagggatagatgctgtgattactcctattttatagatgaagaaacagatgcaaggagccc--------------acgtcccatgca----------caag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372455 200 - 143122389 TCTCTACAGGATGAAGATTCTCTTTTCACCCTCACGTCAACCTCACATCAAGATGAGAGATAAAGAATAGCAAAGTGGGGCTGGCTGTAAACTCTGGATACCTTCTGCAGGTATCCGgggatagatgctgtgattactcctgttttataggtgaagaaacaggtgcgaggagccc--------------acatcccatgcacagcac-tggcaag i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223839948 115 - 227556264 -------------AGGATTCTcttttcaccctcacgtcaacc------------------------------------------------------------------------ccggggataaatgctgtgattactcctattttatagatgaagaaacggatacaaggagccc--------------ccgtcccatgtacaatac-tggtaag i macFas5.chr1 C 0 I 348 s papAnu2.chr1 16890053 128 - 220367699 TCTCTGCAGGACGAGGATTCTCTTTTCACCCTCACGTCAACC------------------------------------------------------------------------CCGGGGATAAATGCTGTGATTactcctattttataaatgaagaaacagacacaAGGAGCCC--------------CCGTCCCATGCACAATAC-TGGTAAG i papAnu2.chr1 C 0 C 0 s canFam3.chr7 36484019 143 + 80974532 tctatacaatacaaacactctcttttacgcctcacatgaacc------------------------------------------------------------------------ttagaaatagatgcttctgttcttccctttctatagatgaagactcagacacagaaagacctagcaaatcatcagatgccacaggtacagtaagtggtaag i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e calJac3.chr19 14400574 1293 - 49578535 I e rheMac3.chr1 17075763 207 - 229590362 I e chlSab2.chr25 82690309 351 + 85787240 I a score=39685.000000 s hg38.chr1_KI270759v1_alt 355763 16 + 425601 ctaggattcaaacaca---- s panTro4.chr1 225111559 16 + 228333871 ctaggattcaaacaca---- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226484322 16 - 229942017 CTAGGATTCAAACACA---- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372655 16 - 143122389 ctgggattcaaacaca---- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17075970 16 - 229590362 CTAGGATTCAAACACA---- i rheMac3.chr1 I 207 C 0 s macFas5.chr1 223840411 16 - 227556264 CTAGGATTCAAACACA---- i macFas5.chr1 I 348 C 0 s papAnu2.chr1 16890181 16 - 220367699 CTAGGATTCAAACACG---- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82690660 16 + 85787240 CTAGGATTCAAACACA---- i chlSab2.chr25 I 351 C 0 s canFam3.chr7 36484162 20 + 80974532 ctaggattagacctgggata i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e calJac3.chr19 14400574 1293 - 49578535 I a score=55305.000000 s hg38.chr1_KI270759v1_alt 355779 22 + 425601 gtggggctc-cagc--accttccct s panTro4.chr1 225111575 22 + 228333871 gtggggctc-cagC--ACCTTCCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226484338 22 - 229942017 GTGGGGCTC-CAGC--GCCTTCCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372671 22 - 143122389 gtcgggctc-cagC--GCCTTCCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17075986 22 - 229590362 GTCGGGCTC-TAGC--ACCTTCCCG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223840427 22 - 227556264 GTCGGGCTC-TAGC--ACCTTCCCG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16890197 22 - 220367699 GTCGGGCTC-CAGC--GCCTTCCCT i papAnu2.chr1 C 0 I 214 s chlSab2.chr25 82690676 22 + 85787240 GTCAGGCTC-CAGC--ACCTTCTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14401867 22 - 49578535 GTGGAGTTC-CAGC--TCCTTCCTC i calJac3.chr19 I 1293 C 0 s canFam3.chr7 36484182 21 + 80974532 gttgagctcacagctggccct---- i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=884068.000000 s hg38.chr1_KI270759v1_alt 355801 296 + 425601 ttcagtccccacatta-gcctctGGCTGAGGTGTGGGGAAAAGCTCACAGA-Tcagactggggggacctgagttccagccccagctcctcgcgggctgcctgtgtgacctgagagccccga-ggctccatctgtgaaatgcagagg----------gggtGGCAGACAGCTCGTCACGAGGAGTGAATGAGATCCTGCAGATGAAGGTATTTGGTA--TACTGAAGAGCTCTGAGAATGATGAAAATGATGTG-CAAGTCTCTTCCAGGACTTTTTGTGTGCCTTTCGTAGTGTAATACAGACCCCGGCACA s panTro4.chr1 225111597 296 + 228333871 TTCAGTCCCCACATTA-GCCTctggctgaggtgtggggaaaagcacacaga-tcagactggggggacctgagttccagccccagctcctcgcgggctgcctgtgtgacctGAGAGCCCCGA-GGCTCCATCTGTGAAATGCAGAGG----------GGGTGGCAGACAGCTCGTCACGAGGAGTGAATGAGATCCTGCAGATGAAGGTATTTGGTA--TACTGAAGAGCTCTGAGAATGATGAAAATGATGTG-CAAGTCTCTTCCAGGACTTTTTGTGTGCCTTTCGTAGTGTAATACAGACCCTGGCACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226484360 297 - 229942017 TTCAGTCCCCACATTA-GCCTCTGGAtgaggtgtggggaaaagcacacaga-tcagactggggggacctgagttccagccccagctcctcgcctgctgcctgcgtgaccttagAGTCCCGAGGGCTGCATCTGTGAAATGCAGAGG----------GGGTGGCAGACAGCTCGTCACAAGGAGTGAATAAGATTGTGCAGATGAAGGTATTTGGTA--TACTGAAGAGCTCTGAGAATGATGACGATGATGTG-CAAGTCTCTTCCAGGACTTTTTGTGTGCCTTTCGTAGTGTAATACAGACCCCGGCACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372693 295 - 143122389 TTCAGTCCCCACATTA-GCCTCTGGATGAGGTGCGGGGAAAagcacacaga-tcagactggggggacctgagttccagccccagctcctcgcctgctgcctgtgtgacctgagagtcccga-ggctccatctgtaaaatgcagagg----------aggtGGCAGACAGCTCGTCAC-AGGAGTGAATGAGATCGTGCAGATGAAGGTATTTGGTA--CACTGAAGAGCTCTGAGAATGATGATGATGATGTG-CAAGTCTCTTCCAGGACTTTTTGTGTGGCTTTTGTAGTATAATACAGACTCTGGCTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17076008 306 - 229590362 TTCACTCCCCACATCA-ACCCCTGGATGATgtgtggggaaaagcacacaga-tcagactggggggacctgagttccagccccagctcctcgcctgctgcctgtgtgacctgagagtcccga-ggctccatctgtaaaatgcagaggcctgtctgcagacaggcagacagcctgtcatgaggagtgaatgagatcgtgcagatgaaggcatttggta--cactgaagagctctgagaatgATGACGATGATGTA-CAAGTCTCTTCCAGGATTTTTTGTGTGCCTTTCATAGTATAATATAGACCCCAGCACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223840449 306 - 227556264 TTCAGTCCCCACATCA-ACCCCTGGATGATGTgtggggaaaagcacacaga-tcagactggggggacctgagttccagccccagctcctcgcctgctgcctgtgtgacctgagagtcccga-ggctccatctgtaaaatgcagaggcctgtctgcagacaggcagacagcctgtcatgaggagtgaatgagatcgtgcagatgaaggcatttggta--cactgaagagctctgagaatgatGACGATGATGTA-CAAGTCTCTTCCAGGATTTTTTGTGTGCCTTTCATAGTATAATATAGACCCCAGCACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16890433 305 - 220367699 TTCAGTCCCCACATCA-ACCCCTGGATGATGTGTGCGGAAAAGCACACAGA-TCAGACTGGGGGGACCTGAGTTCCAGCCCCAGCTCCTCGCCTGCTGCCTGTGTGACCTGAGAGTCCCGA-GgctccatctgtaaaatgcagaggCCTGTCTGCAGACAGGCACACAGCCTGTCATGAGGAGTGAATGAGATCGTGCAGATGAAGGCATTTGATA--CACTGAAGAGCTCTGAGAATGATGACGATGATGTA--AAGTCTCTTCCAGGATTTTTTGTGTGCCTTTCATAGTATAATATAGACCCCAGCACA i papAnu2.chr1 I 214 C 0 s chlSab2.chr25 82690698 306 + 85787240 TTCAGTCCCCACATCA-GCCCCTGGAtgaggtgtggggaaaagcacacaga-tcagactggggggacctgagttccagccccagctcctcgcctgctgcctgtgtgacctgagagtcctga-ggctccatctgtaaaatgcagaggcctgtctgcagacagacagacagcctgtcatgaggagtgaatgagatcatgcagatgaaggcatttggta--cactgaagagctctgagaatgACGACGATGATGTA-CAAGTCTCTTCCAGGATTTTTTGTGTGCCTTTCATAGTATAATATAGACCCTGGCACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14401889 279 - 49578535 TTCAGTCCCCACACTA-GCCCCTGGATGAGGTGTGaggaagagcacacagt-tcagactgaggggacctgagttccagccccagctcctcacctgctgcctgtgtgacttgaggGTCCCGA-GGCTCCGTCTGTAAAATGCAGAGC----------GCTTGGCAGGCAGCTTGTTA---------------ACCATGCAGACGGAGGCATTTGGTG---ACTGAAGAGCCCTGAGGAGGAGGATGATGAGCTG-CAAGTCTCTTCCAGGAA-TTTTGTGTGCCTTTCATAGGATAACACAGACCCCGGCACG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36484203 261 + 80974532 tccattcaccatgccattccccAGGGTGTGGCATGATGAA-AGCACACAGAGTTAGACCAGGTGGACCTGGGCT-AGGGCTCAGCTCCACACAGGCTGCCTGTATGAATTAAGGGTGCTCA-GGCTCCATCCGCACAATGTGGAGA----------GGGAAGTAA----------------------------CATACGG--GAAGGCATTTGGTGCTCAGTAAAGTGCTGCAAGAAT-ATGACAACAATCTCTCAAGTCTCTTTCAGAGTCATTATCAGGCCTTTGGGAGTCCTGTATAGAACA------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=509489.000000 s hg38.chr1_KI270759v1_alt 356097 165 + 425601 TGGGTGTTCACACTTAGGGTATGACCAGCCTCACAGCTAAGTTGCTTAGCATATGGTACCAGCGAACCCAAGTTTGTAAACCAGAACTTCCCATTGCTTTCTTGATTGTCAAGTTTGACCCTGGCCAGCATCCTCTGATACACTGAAAATACACTCTGTGTGTCC s panTro4.chr1 225111893 165 + 228333871 TGGGTGTTCACACTTAGGATATGACCAGCCTCACAGCTAAGTTGCTTAGCATATGGTACCAGCGAACCCAAGTTTGTAAACCAGAACTTCCCATTGCTTTCTTGATTGTCAAGTTTGACCCTAGCCAGCATCCTCTGATACACTGAAAATACACTCTGTGTGTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226484657 165 - 229942017 TGGGTGTTCACACTTAGGATATGACCAGCCTCACAGCTAAGTTGCTTAGCATATGGTACCAGCGAACCCAAGTTTGTAAACCAGAACTTCCCATTGCCTTCTTGATTGTCAAGTTTGACCCTAGCCAGCATCCTCTGAGACACTGAAAATAGACCCTGTGTGTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140372988 165 - 143122389 TGGGTGTTCACACTTAGGATATGACCAGCCTCACAGCTAAGTCGCTTAGCATATGGTACCAGCAAACCCAAGTTTGTGAAGCAGAACTTCCCATTGCCTTCTTGATTGTCGAGTTTGACCCTAGCCAGCATCCTCTGATACACTGAAAATAGACTCTGTGTGTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17076314 165 - 229590362 TGGGTGTTCCCACTTAGGATATGACCGACCTCACAGCTAAGTTGCTTAGCACGTGGTACCAGCGAACCCAAGTTTGTAAACCAGAACTTCCCATTGCCTTCTTGATTGTCAAGTTTGACCCGAGCCAGCATCCTCTAATACACTGAAAATAGACTCTGTGTGTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223840755 165 - 227556264 TGGGTGTTCCCACTTAGGATATGACCAACCTCACAGCTAAGTTGCTTAGCACATGGTACCAGCGAACCCAAGTTTGTAAACCAGAACTTCCCATTGCCTTCTTGATTGTCAAGTTTGACCCGAGCCAGCATCCTCTAATACACTGAAAATAGACTCTGTGTGTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16890738 165 - 220367699 TGGGTGTTCCCACTTAGGATATGACCAACCTCACAGCTAAGTTGCTTAGCACGTGGTACCAGCGAACCCAAGTTTGTAAACCAGAACTTCCCGTTGCCTTCTTGATTGTCAAGTTTGACCCGAGCCAGCATCCTCTAATACACTGAAAATAGACTCTGTGTGTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82691004 165 + 85787240 TGGGTGTTCCCACTTAGGATATGACCAACTTCACAGCTAAGTTGCTTAGCACGTGGTACCAGCGAACCCAAGTTTGTAAACCAGAACTTCCCATTGCCTTCTTGATTGTCAAGTTTGACCCCAGCCAGCATCCTCTAATACACTGAAAATAGACTCTGTGTGTCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14402168 165 - 49578535 TGGGTGTTCACACTTAGGACATGACCAACCTCACAGCTAAGCTGCTTAGCACATGGTATCAGTGAATCCAGGTTTGTCAACCAGAACTTCCCATGGCTTACTTGATTGTCAAGTTTGACCCTAGCCAGCGTGCTCTGATGCTCTGAAAATAGACTGTGTGTGTCC i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484464 0 + 80974532 C a score=239596.000000 s hg38.chr1_KI270759v1_alt 356262 96 + 425601 AGAAGCAGCTGAGCTTTTGTCTCAGGCCAACCT----------------------CACATTCAACCCACTATCCTCCGTCTTGTTCCTCCACGAGGAAAGGGACGTGAATGCCTATAG s panTro4.chr1 225112058 96 + 228333871 AGAGGCAGCTGAGCTTTTGTCTCAGGCCAACCT----------------------CACATTCAACCCACTATCCTCCGTCTTGTTCCTCCATGAGGAAAGGGACGTGAATGCCTATAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226484822 96 - 229942017 AGAGGCAGCTGAGCGTTTGTCTCAGGCCAACCT----------------------CACATTCAACCCACTATCCTCCATCTTGTTCCTCCACGAGGAAAGGGATGTGAATGCCTATAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140373153 96 - 143122389 AGAGGCAGCTGAGCTTTTGTCTCCAGCCAACCT----------------------CACATTCAACCCACTATCCTCCGTCTTGTTCCTCCACGAGGAAAGGGACGTGAATGCCTATAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17076479 105 - 229590362 AGAGGCAGCTGAGTTTTCATCTCAGGCCAACCT-------------GGCCAACCTCACATTCAACCCACTGTCCTCCGTCTTGTTCCTCCATGAGGAAAGGGACGTGAATGCCTGTAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223840920 105 - 227556264 AGAGGCAGCTGAGCTTTCATCTCAGGCCAACCT-------------GGCCAACCTCACATTCAACCCACTGTCCTCCGTCTTGTTCCTCCATGAGGAAAGGGACGTGAATGCCTGTAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16890903 105 - 220367699 AGAGGCAGCTGAGCTTTCATctcaggccagcct-------------ggccaacctcaCATTCAACCCACTGTTCTCCGTCTTGTTCCTCCATGAGGAAAGGGACCTGAATGCCTGTAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82691169 112 + 85787240 AGAGGCAGCTGAGCTTTCATCTCAGGCCAACCTCACATTCATGACAGGCCAACC------TCAACCCACTGTCCTCCGTCGTGTTCCTCCATGAGGAAAGGGACGTGAATGCCTGTAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14402333 96 - 49578535 AGAGGCAGCTGGGCTTTTGTCTCAGGCCAGCTC----------------------CACATTCAGCCCACTGTGCTCTGTCTTGTTCCTCCACGAGGATGGGCACATGAATGCATACAG i calJac3.chr19 C 0 I 5859 s canFam3.chr7 36484464 10 + 80974532 AGAAGAAACT------------------------------------------------------------------------------------------------------------ i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=896440.000000 s hg38.chr1_KI270759v1_alt 356358 337 + 425601 GCCATCAGAGATGCAGGTGAAACAAACCTCAGTGCATCATTGCACGGGGCCAGATGGGGGGGCCGGTGTTTCCCTGCGGAATCCGGAGGACAGCTGTGCCAGCCACGTGTCCAGGCCCAGGATCCACAATAGGAAAGGGGTTGCTGATGCATTTCAAACTA-TCTCTAAAGTTGTGAGTG---TAT-----ATGGCAAAATCCCATCCTACCAAGCCTTCTTGCTATATACATTTGAGTAGAAAATGACATGAGCCAGAAGCTCCAAAGCCTGAGATCCAGAG--CATAAACTCCTGCTGTCATGTTGA--GGCTGGGG-----------------CAGTCCAGTCGCAAGCAGTGCTCCAAAGGAA s panTro4.chr1 225112154 337 + 228333871 GCCATCAGAGATTCAGGTGAAACAAACCTCAGTGCATCACTGCACGGGGCCAGATGGGGGGGCCGGTGTTTCCCTGCGGAATCCGGAGGACAGCTGTGCCAGCCACGTGTCCAGGCCCAGGATCCACAATAGGAAAGGGGTTGCTGATGCATTTCAAACTA-TCTCTAAAGTCGTGAGTG---TAT-----ATGGCAAAATCCCATCCTACCAAGCCTTCTTGCTATATACATTTGAGTAGAAAATGACATGAGCCAGAAGCTCCAAAGCCTGAGATCCAGAG--CATAAACTCCTGCTGTCATGTTGA--GGCTGGGG-----------------CAGTCCAGTCGCAAGCAGTGCTCCAAAGGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226484918 337 - 229942017 GCCATCAGAGATGCAGGTGAAACAAACCTCAGTGCATCATTGCACAGGGCCAGACAGGGGGGCCGGTGTTTCCCTGCAGAATCTGGAGGACAGCTGTGCCAGCCACGTGTTCAGGCCCAGGATCCACAATAGGAAAGGGGTTGCTAATGCATTTCAAACTA-TCTCTAAAGTTGTGAGGG---CAA-----ATGGCAAAATCCCATCATGTCAAGTCTTCTTGCTATATACATTTGAGTAGAAAATGACACAAGCCAGAAGCTCCAAAGCCTGAGATCCAGAG--CATAAACTCCCGCTGTCATGTTGA--GGCCGGGG-----------------CAGTCCAGTCATAAGCAGTGCTCCAAAGGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140373249 337 - 143122389 GCCATCAGAGATGCAGGTGAAACAAACCTCAGTGCATCATTGCACGGGGCCAGACCGGGGGGCCGGTGTTTCCCTGCAGAATCTGGAGGACAGCTGTGCCAGCCACGTGTCCAGGCCCAGGATCCACAATAGGAAAGGGGTTGCTAATGCATTTCAAACTA-TCTCTAAAGTTGTGAGTG---CAA-----ATGGCAAAATCCCATCATGTCCAGCCTTCTTGCTATATACATTTGAGTAGAAAATGACACGAGCCAGAAGCTCCAAGGCCTGAGATCCAGAG--CATAAAGTCCCGCTGTCATGTTGA--GGCTGGGG-----------------CAGTCCAGTCGCAAGCAGTGCTCCAAAGGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17076584 337 - 229590362 GCCACCAGAGATGCAGGTGAAACAAACCTCAGTGCACCATTGCACAGGGCCAGACGGTGGGGCCGGTGTTTCCCTGCGGAATCTGGAGGACAGCGGTGCCAGCCACGTGTCCAGGCCCAGGATCCACAATAGGAAAGGGGTTGCTGATGCATTTCAAACTG-TCTCTGAAGTTGTGAGTG---CAT-----ATGACAAAATCCCATCAGGCCGAGCCTTCTTGCTATATACGTTTGAGTAGAAAATGTCTGGAGCCAGAAGCTCCCAAGCCTGAGATCCAGAG--CATAAACTCCCGCTGTCCTGTTGA--GGCCAGGG-----------------CAGTCCAGTCGCAAGCAATACTCCAAAGGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223841025 337 - 227556264 GCCACCAGAGATGCAGGTGAAACAAACCTCAGTGCACCATTGCACAGGGCCAGACGGTGGGGCCGGTGTTTCCCTGCGGAATCTGGAGGACAGCGGTGCCAGCCACGTGTCCAGGCCCAGGATCCACAATAGGAAAGGGGTTGCTGATGCATTTCAAACTG-TCTCTGAAGTTGTGAGTG---CAT-----ATGACAAAATCCCATCAGGCCGAGCCTTCTTGCTATATACGTTTGAGTAGAAAATGTCTGGAGCCAGAAGCTCCCAAGCCTGAGATCCAGAG--CATAAACTCCCGCTGTCCTGTTGA--GGCCAGGG-----------------CAGTCCAGTTGCAAGCAATACTCCAAAGGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16891008 336 - 220367699 GCCACCAGAGATGCAGGTGAAACAAACCTCAGTGCACCATTGCACAGGGCCAGACGGTGGGGCCGATGTTTCCCTGCGGAATCTGGAGGACAGCGGTGCCAGCCACGTGTCCAGGCCCAGGATCCACAATAGGAAAGGGGTTGCTGACACATTTCAAACTG-TCTCTGAAGTTGTGAGTG---CAT-----ATGACAAAATCCCATCAGGCCGAGCCTTCTTGCTATATAC-TTTGAGTAGAAAATGACTGGAGCCAGAAGCTCCAAAGCCTGAGATCCAGAG--CATAAACTCCCGCTGTCCTGTTGA--GGCCAGGG-----------------CAGTCCAGTTGCAAGCAATACTCCAAAGGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82691281 345 + 85787240 GCCACCAGAGATGCAGGTGAAACAAACCTCAGTGCACCATTGCACAGGGCCAGACGGTGGGGCCGGTGTTTCCCTGCGGAATCTGGAGGACAGCGGTGCCAACCACATGTCCAGGCCCAGGATCCACAATAGGAAAGGGGTTGCTAATGCATTTCAAACTG-TCTGTGAAGTTGTGAAAATCCCATCAGGGATGGCAAAATCCCATCAGGCCGAGCCTTCTTGCTATATATGTTTGAGTAGAAAATGACTGGAGCCAGAAGCTCCCAAGCCTGAGATCCAGAG--CATAAACTCCCGCTGTCCTGTTGA--GGTCAGGG-----------------CAGTCCAGTCGCAAGCAATACTCCAAAGGAA i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36484474 354 + 80974532 --CATTAGAGACGGAGGTGAAACCTCTCTCAGTGTGCCATAACCTGAGTCTAGACAGAGGGTTGAGTGCTTCACTACGGAATCCAGAGGAAACTGATG---GCCATGTGGTCAGCTCTGTGACCCACAATAAGAAAGTGGTTTCTAGTGAATTTCAATCTATTCTCTAAAGGTTTGAGCA---AAT-----ATAGCAGAATCCCATCATACCAAGCCTTCTTGCTATATAGATTTAAATAGAAAGTGAGTCTAGCCAGAGGCTCCTATGCATAAGGTCCAGAGATTATGAACTCCTTACATGATGTGGGCTGGCCAAGAAGGCACCTGTCCCCGATCAGGACTGTCCCAACAAGTACCCCAGAGGCA i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e calJac3.chr19 14402429 5859 - 49578535 I a score=985859.000000 s hg38.chr1_KI270759v1_alt 356695 426 + 425601 TGCAGtaggctgttctcatcttgccgtaaagaaatacccgaggctgggtaatttctaaggagaaaggtttatttttggctcacagttccacaggctgtacgggaagcatggtgccggcatctgcttctggtgaggcctcaggaagcttataatcaagatggaaggtgaagggggagcaggtgtgttacatggcaacagagggtgcaagagagagagaagggggaggtcccagactctttgaaatagctggatctcatgtgaactaatagagcgagaactcactcatcaacaggggatggctctaagccattcaggagggatcttcccccaggatccagccacctcccgccaggccccccctccaacactgggaatcacatttcaacctgagctttggagggtatgaacatccaaaccatatTGGGC s panTro4.chr1 225112491 420 + 228333871 TGCAGtaggctgttctcgtcttgccgtaaagaaatacccgaggctgggtaatttctaaggagaaaggtttatttttggctcacagttccaca----gtacgggaagcgtggtgccggcatctgcttctggtgaggcctcaggaagcttctaatcaagatggaaggtgaagggggagcaggtgtgttacatggcaacagagggtgca--agagagagaagggggaggtcccagactctttgaaacagccggatctcgtgtgaactaatagagcgagaactcactcatcaacaggggatggctctaagccattcaggagggatcttcccccaggatccagccacctcccgccaggccccacctccaacactgggaatcacatttcaacctgagctttggagggtacgaacattcaaaccatatTGGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226485255 422 - 229942017 tgcggtaggccgttctcgtcttgccgtaaagaaatacccgaggctgggtaatttctaaggagaaaggtttatttttggctcacagctccacaggctgtatgggaagtgtggtgctggcatctgcttctggtgaggcctcaggaagcttttaatcaagatggaaggtgaagggggggcaggtgtgttacatggcaacagagggtgca--agagagagaagggggaggtcccaga--ctttgaaacagccggatctcgtgtgaactaatagagcgagaactcactcatcaacaggggatggctctaagccattcaggagggatctgcccccattatccagccacctttcaccaggccccacctccaacactgggaatcacatttcaacatgagctttggagggtacaaacatccaaaccatatTGGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140373586 423 - 143122389 tgcggtaggccgttctcgtcttgccgtaaagaaatccccgaggctgggtaatttct-aggagaaaggtttatttttggctcacagttccacagcctgtacaggaagcgtggtgctggcatctgcttctggtgaggcctcaggaagcttctaatcaagatggaaggtgaagggggagcagatgtgttacatggcaacagagggtgca--agagagaggagggggaggtcccagactatttgaaacagccggatctcgtgtgaactaatagagcgagaactcactcatcaacaggggatggctctaagccattcaggagggatctgcccccaggatccagccacctcctgccaggcctcacctccaacactgggaatcacatttcaacatgagctctggagggtaccaacatccaaaccatatTGGGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17076921 423 - 229590362 tgtggtaggccgttcttgtctcgctgcaaagaaatacctgaggcagggtaatttctaaggagaaaggtttatttttggctcacagttccacaggctgtacgggaagcgtggtgccggcatctgcttctggtgaggcctcaggcagcttctaatcgtgatggaaggtgaagggggagcaggcgtgtcacagggcaacagagggtgca--agagagagaagggggaggtcccatactctttgaaacagccggatctcctgtgaactaacagagcgagaactcaatcatcaacaggggatgtctctaagccattcaggagggatctgcctccatgctccagccccctcccgccaggccccacctccaacactgggaatcccatttccgcatgagcttt-gagggcacgaacatccaaaccatatTGGGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223841362 423 - 227556264 tgtggtaggccgttcttgtctcactgcaaagaaatacctgaggcagggtaatttctaaggagaaaggtttatttttggctcacagttccacaggctgtacgggaagcgtggtgccggcatctgcttctggtgaggcctcaggcagcttctaatcgtgatggaaggtgaagggggagcaggcgtgtcacagggcaacagagggtgca--agagagagaagggggaggtcccatattctttgaaacagccggatctcctgtgaactaacagagcgagaactcgctcatcaacaggggatgtctctaagccattcaggagggatctgcccccatgctccagccccctcccgccaggccccacctccaacactgggaatcccatttccgcatgagcttt-gagggcatgaacatccaaaccatatTGGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16891344 423 - 220367699 TGTGGTAGGCCGTTCTTGTCTCGCtgcaaagaaatacctgaggcagGGTAATTTCTAAGGAGAAAGGTTTatttttggctcacagttccacaggctgtacggGAAGCGTGGTgccggcatctgcttctggtgagacctCAGGCAGCTTctaatcatgatggaaggtgaagggggagcaggcgtGTCACAGGGCAACAGAGGGTgcg--agagagagaaggaggaggtccCATACTCTTTGAAACAGCCGGATCTCGTGTGAACTAACAGAGCGAGAACTCGCTCATCAACAGGGGATGGCTGTAAGCCATTCaggagggatctgcccccatgctCCAGCCCCCTcccgccaggccccacctccaacactgggaatcccATTTCCGCATGAGCTTT-GAGGGCAcgaacatccaaaccatattgGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82691626 422 + 85787240 tgtggtaggccgttcttggctcgctgcagagaaatacctgaggcagggtaatttctaaggagaaaggtttatttttggctcacagttccacaggctgtacgggaagcgtggtgccggcatctgcttctggtgaggcctcaggtagcttctaatcgtgatggaaggtgaagggggagcaggcgtgtcacagggcaacagagggtgcg--agacagagaaaggggaggtcccagactctttgaaacagccggatctcgtgtgaactaacagagcgagaactcgctcatcaacaggggatggctctaagccattcaggagggatctgcccctgtgctccag-cccctcccgccaggccccacctccaacactgggaatcccatttctgcatgagcttt-gagggcacgaacatccaaaccataCTGGGC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36484828 0 + 80974532 C e calJac3.chr19 14402429 5859 - 49578535 I a score=347318.000000 s hg38.chr1_KI270759v1_alt 357121 132 + 425601 TCTATCGTTTTTGAGATTTTACTCACT-GGGCGACAACGTAGA--GCACCCACCGCTGGGCTGATA-----TGATTTGTTCCCGTTTCCTGGGCAACCAGGTGCGCAGGGCCACGAGATGAGCCTCTTGTGACAACTAAG s panTro4.chr1 225112911 132 + 228333871 TCTATCGTTTTTGAGATTGTACTCACT-GGGCGACAACGTAGA--GCACCCACCGCTGGGCTGATA-----TGATTTGTTCCCGTTTCCTGGGCACCCAGGTGCGCAGGGCCACGAGATGAGCCTCTTGTGACAACTAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226485677 132 - 229942017 TCTATCGTTTTTGAGATTTTATTCACT-GGGTGACAACGTAGA--GCCCCCACAGCTGGGCTGATA-----TGATTTGTTCCCGTTTCCTGGGCACCCAGGTATGCAGGGCCACGAAATGAGCCTCTTGTGACAACTGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140374009 132 - 143122389 TCTATCGTTTTGGAGATTTTACTCACT-GGGCGACAACGTAGA--GCCCCCACGGCTGGGCTGATA-----TGATTCGTTCCCGTTTCCTGGGCACCCAGGTGTGCAGGGCCAGGAGATGAGCCTCTTGTGACAACTAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17077344 132 - 229590362 TCTATCGGTTTTGAGATCTTACTCACT-GGGTGACAACGCAGA--GCCCCCACGGCTGGGCTGATA-----TGATTTGTTCCCGTTTCCTAGGCACCTGGGTGTGCAGGGCCACGAGATGAGCCTCTTGTGACAACTGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223841785 132 - 227556264 TCTATCGGTTTTGAGATCTTACTCACT-GGGTGACAACGCAGA--GCCCCCACGGCTGGGCTGATA-----TGATTTGTTCCCGTTTCCTAGGCACCTGGGTGTGCAGGGCCACGAGATGAGCCTCTTGTGACAACTGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16891767 132 - 220367699 TCTATCGGTTTTGAGATTTTACTCACT-GGGTGACAACGCAGA--GCCCCCACGGCTGGGCTGATA-----TGATTTGTTCCCGTTTCCTAGGCACCTGGGTGTGCAGGGTCACAAGATGAGCCTCTTGTGACAGCTGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82692048 132 + 85787240 TCTATCGGTTTTGAGATTTTACTCACT-GGGTGACAACGCAGA--GCCCCCGCGGCTGGGCTGATA-----TGATTTGTTCCCGTTTCCTAGGCACCCGGGTGTGCAGGGCCACGAGATGAGCCTCTTGTGACAGCTAAG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36484828 123 + 80974532 TTTATTTTTCTGGAGATTTTATTCACTAGAGTGAGAACTTGGAAGACCACCACAGTTGTGCTGATAATGATTGATTTGTTCAAATTTCCTAGGCA-------GTAGAGG----------GAGCTTTTTGTGACAAGTGAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e calJac3.chr19 14402429 5859 - 49578535 I a score=591580.000000 s hg38.chr1_KI270759v1_alt 357253 198 + 425601 CCACCTTGA-TGATGGCTTTAACTC-GGGGCCTGGAAGTCAGACTCCCATGCTTTGAGGATATTTTTT----GT-----------------------GGTGGTGTCATTTGTTATGAGGG-TTATTCTTTTTTCTCTTGGTACTTCCCAGCCTCATTACTTCTCTGTGCCAAACTGTGCCAGGAAATCACTGACTTT---atcatcatgatcatcatcatcatcaccatca s panTro4.chr1 225113043 198 + 228333871 CCACCTTGA-TGATGGCTTTAACTC-GGGGCCTGGAAGTCAGACTCGCATGCTTTGAGGATATTTTTT----GT-----------------------GGTGGTGTCATTTGTTATGAGGG-TTATTCTTTTTTCTCTTGGTACGTCCCAGCCTCATTACTTCTCTGTGCCAAACTGTGCCAGGAAATCACTGACTTT---atcatcatgatcatcatcatcatcaccgtca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226485809 201 - 229942017 CCACCTTGACCGATGGCTTTAACTC-GGGGCCTGGAAGTCAGACTCGCATGCTTTGAGGATA-TTTTT----GT-----------------------GGTGGTGTCATTTGTTATGAGGG-TTATTCTTTATTCTCTTGGTACTTCCCAGCCTCGTTACTTCTCTGTGCCGAACTGTGCCAGGAAATCACTGACTTTatcatcatcatgatcaccatcatcatcaccatca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140374141 197 - 143122389 CCACCTTGA-CGATGGCTTTAACTC-GGGGCCTGGAAGTCAGACTCACATGCTTTGAGGATA-TTTTT----AT-----------------------GGTGGTGTCATTTGTTATGAGGG-TTATTCTTTTTTCTCTTGGTACTTCCCAGCCGCATTACTTCTCTGTGCCAAACTGTGCCAGGAAATCACTGACTTT---atcatcatgctcatcatcatcatcgccatca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17077476 192 - 229590362 CCACCTTGC-CGATGGTTTTAACTCGGGGGCCTGGAAGTCAGACTTGCGTGCTTTGAGGATA-TTTTT----GT-----------------------GGTGGTGTCATTTGTCATGAGGG-TTGTTCTTTTTTCTCTTGGTACTTCCCAGCCTCATTACTTCTCTGTGCCAAACTGTGCCAGGAAATCACCGGCTTT---ACCATTATGATCATCGCCATCA------TCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223841917 192 - 227556264 CCACCTTGC-CGATGGTTTTAACTCGGGGGCCTGGAAGTCAGACTTGCATGCTTTGAGGATA-TTTTT----GT-----------------------GGTGGTGTCATTTGTCATGAGGG-TTGTTCTTTTTTCTCTTGATACTTCTCAGCCTCATTACTTCTCTGTGCCAAACTGTGCCAGGAAATCACCGGCTTT---ACCATCATGATCATCGCCATCA------TCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16891899 192 - 220367699 CCACCTTGC-CGATGGTTTTAACTCGGGGGCCTGGAAGTCAGACTTGCATGCTTTGAGGATA-TTTTC----GT-----------------------GGTGGTGTCATTTGTTACGAggg-ttgttcttttttctcttggtaCTTCCCAGCCTCGTTGCTTCTCTGTGCCAAACTGTGCCAGGAAATCACCGGCTTT---ACCATCATGATCATCGCCATCA------TCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82692180 192 + 85787240 CCACCTTGC-TGATGGTTTTAACTCAGAGGCCTGGAAGTCAGACTCACATGCTTTGAGGATA-TTTTT----GT-----------------------GGTGGTGTCATTTGTTATGAGGG-TTATTCTTTTTTCTCTTGGTACTTCCCAGCCTCATTACTTCTCTGTGCCAAACTGTGCCAGGAAATCACCGGCTTT---ACcatcatgatcatcgtcatca------tca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 35176664 208 + 49578535 CCACCTTGC-CGATGGCTTTACCTC-GGGGCCTGCGAGTCAGATGCACGTGCtgtgtgtgtg-tgtgt----gtgtgtgtgtgtgtgtgtatgtgtgggtgGCGTCATTTGTCATAAGGG-TTATTCTTTCTTCTCTTTGTACTTCCCAGCCTCATTACTTCTCTGCGCCAAACTGTGCCAGGAAATCACTGGTTTT---ACCATCTTCATCATCG------------TCA i calJac3.chr19 T 62666 C 0 s canFam3.chr7 36484951 203 + 80974532 CCACCCTGT-CACTAGCGATAATTCAGGTGCCTAGAAGTCAGAGTCTTATGCTTTCAGGATA-TTTTTGGTGGT-----------------------GGTGCTGTAATTTATTGTCAGGATTTTTTCCTTTTTCTCATAGGACTTTATATCCACATTACTGCTCGGTGCCAAACTATGCCCACAAAACACTCCCTAc---accaccaccaccactaccattattaccatca i canFam3.chr7 C 0 I 100 e mm10.chr1 178894242 441 + 195471971 I a score=130001.000000 s hg38.chr1_KI270759v1_alt 357451 52 + 425601 ctcaAACTTTGGTAGTGCAGTGCAGTGCCTGCTAGCGCCAAGCTCTAGACTC s panTro4.chr1 225113241 52 + 228333871 CTCAGACTTTGGTAGTGCAGTGCAGTGCCTGCTAGCGCCAAGCTCTAGACTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226486010 52 - 229942017 CTCAAACTTTGGTAGTGCAGTGCagtgcttgctagtgccaagctctagactc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140374338 52 - 143122389 ctcaAACTTCAGTAGTGCAGTGCAGTGCTTGCTAGCGCCAAGCTCCAGACTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17077668 47 - 229590362 CTCAAACTTTGGT-----AGTGCAGCACCTGCTAGTGCCAAGGTCTAGACTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223842109 47 - 227556264 CTCAAACTTTGGT-----AGTGCAGCACCTGCTAGTGCCAAGCTCTAGACTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16892091 47 - 220367699 CTCAAACTTTGGT-----AGTGCAGCACCTGCTAGTGCCAAGCTCTAGACTc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82692372 47 + 85787240 ctcaGACTTTGGT-----AGTGCagcacctgctagtgccaagctctagactc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 35176872 47 + 49578535 CTCAAACTTCGGA-----AGTGCAGCGCTTGTTAGAACCAAGCTCTATACTC i calJac3.chr19 C 0 I 598 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36485154 100 + 80974532 I a score=2608.000000 s hg38.chr1_KI270759v1_alt 357503 3 + 425601 GGT- s panTro4.chr1 225113293 3 + 228333871 GGT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226486062 3 - 229942017 ggt- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140374390 3 - 143122389 GGT- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17077715 4 - 229590362 GGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223842156 4 - 227556264 GGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16892138 4 - 220367699 ggtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82692419 3 + 85787240 ggt- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 35177517 3 + 49578535 GGT- i calJac3.chr19 I 598 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36485154 100 + 80974532 I a score=361303.000000 s hg38.chr1_KI270759v1_alt 357506 115 + 425601 TCTT--TATATATACTCAGTCATCGCATGTTCATGGCAGTCTCATGGGACCAGCACTACAAATGTGTCTAAGGAGGTTTCCTCGAAATCTCCTTTGTCACAGTGGCCTGGAGCATGC s panTro4.chr1 225113296 117 + 228333871 TCTTTATATATATACTCAGTCATCGCATGTTCATGGCAGTCTCATGGGACCAGCACTACAAATGTGTCTAAGGAGGTTTCCTCGAAATCTCCTTTGTCACAGCAGCCTGGAGCATGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226486065 115 - 229942017 tctt--tatatatactcagtcatcgcgtgttcatggcagtctcataggaccagtactaCAAATGTGTCTAAGGAGATTTCCTCGAAATCTCCTTTGTCACAGCAGCCTGGAGCATGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140374393 115 - 143122389 TCTT--TATATATACTCAGTCATCGCATGTTCGTGGCAGTCTCATAGGACCAGTACTACAAATGTGTCTAAGGAGGTTTCCTCAAAACTTCCTTTGTCACAGCAGCCTGGAGCATGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17077719 115 - 229590362 TTTT--TATATATACTCAGTTATTGCATGTTCACGGCAGTCTTGTAGGACCAGTACCACAAATGCGTCTAAGTAGGTTTCCTCGAAATGTCCTTTGTCACAGCAGCCTGGAGCATGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223842160 115 - 227556264 TTTT--TATATATACTCAGTTATTGCATGTTCACGGCAGTCTTGTAGGACCAGTACCACAAATGCGTCTAAGTAGGTTTCCTCGAAATGTCCTTTGTCACAGCAGCCTGGAGCATGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16892142 115 - 220367699 tttt--tatatatactcagTTATTGCATGTTCACGGCAGTCTTGTAGGAGCAGTACCACAAATGCGTCTAAGTAGGTTTCCTCGAAATGTCCTTTGTCACAGCAGCCTGGAGCATGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82692422 115 + 85787240 tttt--tatatatattcagtcatggcatgttcacggcagtctcgtaggaccagtaccaCAAATGCGTCTAAGTAGGTTTCCTCGAAATTTCCTTTGTCACAGCAGCCTGGAGCATGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 35177520 113 + 49578535 TCTT--TATATATACTCAGACACCGTATGTTCGCGGTCGTCCCATAGGACCAGCACGACAAATGTGCCGAAGGAGGTTTCCTTGAAATGTCCTTTGTCATGGCACCATG--GCATCC i calJac3.chr19 C 0 n 0 s canFam3.chr7 36485254 115 + 80974532 tata--tatatatatTAACTAATTTAATCTTCATTTTAACTCCATGGGGCCCATACTAGAAATCGACCAAAGAAGGTTCATTCCAAATGTCCTTTGTCACAGCAGCCTGGAGCATGC i canFam3.chr7 I 100 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=2473680.000000 s hg38.chr1_KI270759v1_alt 357621 828 + 425601 AGAAGCAGGTAACAGAAATACCAGCAGCCACTCCTGACTCATCACTGATAGTGGAACTGGTAAGGGACAAACTTGTAAATGAGCAAAGTTAGATTTCTGGGCCTCCTCACCACCTCCCCACTTAGTGCTGTGTCCCCACCCCACAGGTACCCGGTAC-------CTTTGTGCTCTCCAAGAATGCCCCATAC-TGCCACTTTCCA-CCCCCATCCTCCTGCCTGTACCTTGTTGCAAATCCCCAACGCCCTGGGCCTCAGTTGACTCTGTACCTACCCCAAAAGGCATCTTTCCTGCAGGTGCTCCTTCCCACGAAGCCCTGTGGTAAGGTCATGT--GCTGTCTTCGGTCAAATCAAAACTCCAGTATCTGATAAGAGTCTAAAGAtatatgagagttcccactattcccaaccttgtcaatatttgtattgtttgatt------tttaaagtttttggccattaggtgaatatttaatggt-atgtcattgtaattttaatttgcaa-ttttcctgatgactgctaagg-ttgagtatcttttcatgtttattat----tctctgtatagttcttgttcatgt--cttttgcctgcttttctgtacagttgcttagctttttgttaattgattcataggaattctttgtaaactctggatac----CTTCTGCAGGCACCACTCATTGAGACCCCACTGACCAGGAACGATCTTTCAGTCATTT---AAG----TGACTCTGTGTGGAG-TTGTCTCTGGGTTCTCTAGCCCTGCGCTGTTACC--ACAGTCTTAATAACATTGCCCTTTGCTAATTTTCTTTAC-GGCATGTTCATTTGCCAT-TTATTAATTTCTGTTGTTTGCTA s panTro4.chr1 225113413 829 + 228333871 AGAAGCAGGTAACAGAAATACCGGCAGCCACTCCTGACTCATCACTGATAGTGGAACTGGTAAGGGACAAACTTGTAAATGAGCAAAGTTAGATTTCTGGGCCTCCTCACCACCTCCCCACTCAGTGCTGTGTCCCCACCCCACAGGTACCCGGTAC-------CTTTGTGCTCTCCAAGAATGCCCCGTGC-TGCCACTTTCCA-CCCCCATCCTCCTGCCTGTACCTTGTTGCAAATCCCCAACGCCCTGAGCCTCAGTTGACTCTATACCTACCCCAAAAGGCATCTTTCCTGCGGGTGCTCCTTCCCATGAAGCCCTGTGGTAAGGTCATGT--GCTGTCTTCGGTCAAATCAAAACTCCAGTATCTGATAAGAGTCTAAAGAtatatgagagttcccactattcccaaccttgtcaatatttgtattgtttgatt------tttaaagtttttggccattaggtgaatatttaatggt-atgtcattgtaattttaatttgcaa-ttttcctgatgactgctaaggtttgagtatcttttcatgtttattat----tctctgtatagttcttgttcatgt--cttttgcctgcttttctgtacagttgcttagctttttgttaattgattcgtaggaattctttgtaaactctggatac----CTTCTGCAGGCACCACTCATTGAGACCCCACTGACCAGGATCGATCTTTCAGTCATTT---AAG----TGACTCTGTGTGGAG-TTGTCTCTGGGTTCTCCAGCCCTGCGCTGTTACC--ACAGTCTTAATAACATTGCCCTTTGCTAATTTTCTTTAC-GGCATGTTCATTTGCCAT-TGATTAATTTCTGTTCTTTGCTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226486180 835 - 229942017 AGAAGCAGGTAACAGAAATACCAGCAGCCACTCCTGACTCATCACTGATAGTGGAACTGGTAAGGGACAAACTTGTAAATGAGCAAAGTTAGATTTCTGGGCCTCATCACCACCTCCCCACTCAGGGCTGTGCCCCTACCCCACAGGTACCCGGTAC-------TTTCGTGCTCTCCAAGAATGCCCCGTGC-TGCCACCTTCCACCCCCCATCCTCCTGCCTGTACCTTGTTGCAAATCCCCAACACCCTGGGTCTCAGTTGACTCTATACCTACCCCAAAAGGCATCTTTCCTGCGGGTGCTCCTTCCCATGAAGCCCTGTGGTAAGGTCATGT--GCTGTCTTCGGTCAAATCAAAACCCCAATATCTGATAAGAGTCTAATGAtatatgagagttcccactattcccaaccttgtcaatatttgtattgtttgatt------tttaaagtttttggccatcaggtgaatatttaatagt-atgtcattgtaattttaatttgcaatttttcccgatgactgctaagg-ttgagtatcttttcatgtttattct---ctttttgtatagctcctgttcatgt--cttttgcctgcttttctgtacagttgcttagctttttgtttattgattcacaggaattctttgtaacctctggatac----CTTCTGCAGGCACCACTCATTGAGCCTCTACTGACTAGGAACGATCTTTCAGTCATTT---AAGTGTTTGCCTCTGTGTGGAG-TTGTCTCTGGGCTCTCTAGCCCTGTGCCATTACC--ACAGTCTTGATAACATTGTCCTTTGCTAATTTTCTTTAT-GGCATGTTCATTTTCCAT-TTATTAATTTCTGTTCTTTGCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140374508 830 - 143122389 AGAAGCAGGTAACAGAAATACCAGCAGCCACTCTTGACTCATCACTGATAGTGGAACTGGTAAGGGACAAACTTGTAAATGAGCAAAGTTAGATTTCTGGGCCTC-TCACCACCTCCCCACTCAGTGCTGTGCCCCCACCCCACAGGTACCCAGTAA-------CTCCGTGCTCTTCAAGAATGCCCCGTGC-TGCCACCTTCCA-CCCCCATCCTCCTGCCTGTACCTTGTTGCAAATCCCCAACGCCCTGGGCCTCAGCTGACTCTACACCTAGCCCAAAAGGCATCTTTCCTGCGGGTGCTCTTTCCCATGAAGCCCTGTGGTAAGGTCATGA--GCTGTCTTCGGTCAAATCAAAACCCCAATATCTGATAAGAGTCTAATGAtatatgagagttcccactgttcccaaa-----caatgtttgtattgtttgatt------tttaaagtttttggccatcaggtgaatatttaatggt-atgtcattgtcattttaatttgcaa-ttttcctgatgactgctaagg-ttgagtatcttttcgtgtttattattctctttttgtatagctcttattcatgt--cttttgcctgcttttctgtacagttgcttagctttttgtttattgattcataggaattctttgtaaactctggatac----CTTCTGCAGGCCCCACTCATTGAGCCCCCACTGACCAGGAACGATCTTTCAGTCATTT---AAGTGTTTGCCTCCGCGTGGAG-CTGTCTCTGGGCTCTCTAGCCCTGCGCCATTACC--ACAGTCTTAATAACATTGTCCTTTGCTAATTTTCTTTAT-GGCATGTTCATTTTCCAT-TTATTAATTTCTGTTCTTTGCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17077834 828 - 229590362 AGATGCAGGTAACAGAAGTACCAGCAGCCACTCTTGACTCACCACTGATAGTGGAACTGGTAAGGGACAAACTTGTAAATGAGCCAAGTTAGATTTCTGGGCCTCGTCACCACCTCCCCACTCAGTGCTGAGCCCCCACCCCACAGGTACCCGGTAC-------CTTCGTGCTCTCCAAGAATGCCCCGTGC-TGCCACCCTCCA-CCCCCATCCTCCTGCCTCCACCTTGTTGCAAATCCCCAACGCCCTGGGCCTCAACTGACTCTGTACATACCCCAAAAGGCATCTTTCCTGCGGGTCCTTCTTCCCATGAAGCCCTGTGGTAAGGTCATGT--GCTCTCTTCGGTC------AAACCCTGATAGCTGATAAGAGTCTAATGAcatatgagagttcccgctattcccaaccttgtcaatatttgtatgggttgatt------tttaacgtttttggccatcaggtgaatatttaatggt-atgtcattgtaattttaatttgcaa-ttttcctgatgactactaagg-ttgagtatcttttcatgtttattattctctttttgtatagctcttgttcatgt--cttctgcctgcttttccgtacagttgcttagctttttgtttattgattcatgggaattctttgtaaattctggatac----CTTCTGCAGGCACCACTCATTGAGCCCACACTGACCAGGAACGATCGTTCAGTCATTT---CAGTGTTTGCCTCTGTGTGGAG-CTGTCTCTGGGCTCTCTAGCCCTGCGTCGTCACC--TCAGTCTTAATAACATTGTgctttgctcattttctttataggcatgttcattttccat----ttgatttctgttctttgcta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223842275 828 - 227556264 AGATGCAGGTAACAGAAGTACCAGCAGCCACTCTTGACTCACCACTGATAGTGGAACTGGTAAGGGACAAACTTGTAAATGAGCCAAGTTAGATTTCTGGGCCTCGTCACCACCTCCCCACTCAGTGCTGAGCCCCCACCCCACAGGTACCCGGTAC-------CTTCGTGCTCTCCAAGAATGCCCCGTGC-TGCCACCCTCCA-CCCCCATCCTCCTGCCTCCACCTTGTTGCAAATCCCCAACGCCCTGGGCCTCAACTGACTCTATACATACCCCAAAAGGCATCTTTCCTGCGGGTCCTTCTTCCCATGAAGCCCTGTGGTAAGGTCATGT--GCTCTCTTCGGTC------AAACCCTGATAGCTGATAAGAGTCTAATGACAtatgagagttcccactattcccaaccttgtcaatatttgtatgggttgatt------tttaacgtttttggccatcaggtgaatatttaatggt-atgtcattgtaattttaatttgcaa-ttttcctgatgactactaagg-ttgagtatcttttcatgtttattattctctttttgtatagctcttgttcgtgt--cttctgcctgcttttctgtacagttgcttagctttttgtttattgattcatgggaattctttgtaaattctggatac----ctTCTGCAGGCACCACTCATTGAGCCCACACTGACCAGGAACGATCGTTCAGTCATTT---CAGTGTTTGCCTCTGTGTGGAG-CTGTCTCTGGGCTCTCTAGCCCTGCGTCGTCACC--TCAGTCTTAATAACATTGTGCtttgctcattttctttataggcatgttcattttccat----ttgatttctgttctttgcta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16892257 825 - 220367699 AGAAGCAGGTAACAAAAATACCAGCAGCCACTCTTGACTCACCACTGATAGTGGAACTGGTAAGGGACAAACTTGTAAATGAGGCAAGTTAGATTTCTGGGCCTCGTCACCACCTCCCCACTCAGTGCTGAGCCCCCACCCCACAGGTACCCGGTAC-------CTTCGTGCTCTCCAAGAATGCCCCGTGc-tgccaccctcca-cccccatcctCTTGCCTCTACTTTGTTGCAAATCCCCAACGCCCTGGGCCTCAATTGAGTCTATACCTACCCCAAAAGGCATCTTTCCTGCGGGTCCTTCTTCCCATGAAGCCCTGTGGTAAGGTCATGT--GCTCTCTTCGGTC------AAACCCTGATAGCTGATAAGAGTCTAATGACATATGAGAGTTCCTGCTATTCCCAACCTTGTCAATATTTGTATGGgttgatt------tttaatgtttttggcCATCAGGTGAATATTTAATGGT-Atgtcattgtaattttaatttgcaa-ttttcctgatgactactaagg-ttgagtatcttttcatgtttattat--tctttttgtatAGCTCTTGTTCAtgt--cttctgcctgcttttctgTACAGTTGCTTagctttttgtttattgattcatgggaattctttgtaaattctggatac----cTTCTGCAGGCACCACTCATTGAGCCCACACTGACCAGGAACGATCGTTCAGTCATTT---CAGTGTTTGCCTCTGTGTGGAG-CTGTCTCTGGGCTCTCTAGCCTTGCGTCGTCACC--TCAGTCTTAATAACATTGtgctttgcttattttctttat-ggcatgttcattttccat----tttatttctgttctttgcta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82692537 828 + 85787240 AGACGCAGGTAACAGAAGTACCAGCAGCCACTCTTGACTCACCACTGATAGTGGAACTGGTAAGGGACAAACTTATAAATGAGCCAAGTTAGATTTCTGGGCCTCGTCACCACCTCCCCACTCAGTGCTGAGCCCCCACCCCACAGGTACCCGGTAC-------CTTCGTGCTCTCCAAGAATGCCCCGTGC-TGCCACCCTCCA-CCCCCATCCTCCTGCCTCCACCTTGTTGCAAACACCCAGTGCCCTGGGCTTCAATTGACTCTATACCTACCCCAAAAGGCATCTTTCCTGTGGGTCCTTCTTCCCATGAAGCCCTGTGGTAAGGTCATGT--GCTCTCTTCGGTC------AAACCCTGATAGCTGGTAAGAGTCTAATGAcatatgagagttcccactattcccaaccttgtcaatatttgtatggtttgatt------tttaacgtttttggccatcaggtgaatatttagtggt-atgtcattgtaattttaatttgcga-ttttcctgatgactactaagg-ttgagtatcttttcatgtttattattctctttttgtatagctctcgttcatgc--cttctgcctgcttttctgtacagctgcttagcttgttgtttattgattcataggaattctttgtaaactctggatac----CTTCTGCAGGCACCACTCACTGAGCCCACACTGACCAGGAACGATCGTTCAGTCATTT---CAGTGTTTGCCTCTGTGTGGAG-CTGTCTCTGGGCTCTCTAGCCCTGCGTCGTCACC--TCAGTCTTAATAACATTGTGCTTTGCTCATTTTCTTTATAGGCATGTTCATTTTCCAT----tttatttctgttctttgcta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14408288 791 - 49578535 AGAAGCATGTAACAGAAATACCAGCAGCCACTCTTGACTGACCACTGACAGTGGAACAGGGAAGGGACAAACTTGTAAATGAGC--AGTTAGATTTCTGGGCCTC-TGAGCACCT-----------------------CCCCACAGGTACTC-GTACGTTCGTGGTTCGTGCTCTCCGAGAACGCCCCCTGC-TGCCAGCCTCCA-CCCGCATCCTCCCGCCTCCACCTTGTTGTAAATCCCTGATGCCCTGGGCCTCAGTTAACTGGATACCTACCCCAAAAGGCATCTTTCCTGTGGGTGCTCCTTCCCACGAACCCCTGTGGTAAGGTAATGT--GCTCTCTTCAGTCAAATCAAGACCCTGGTGTCTGATAAGGGTCTAATGAtataggagagttcccactatt-ctaaccacgtcagtatttgtattgtttgagt------tttaaaggttttggccatcggacgagtatttaatggt-atgtcattgtaatttcaatttgcag-ctttcctgatgactagtaagg-ctgagtatcttttcatttttcttattctctttgtgcttagctcttgttcatgt--cttttgcctgcttttctgtacagttgcttcactctttg----ttggttcataggaattctttgtaagctctgggtaT----CTTCTGCAGGCACCACTCACTGGGCCCCCGCTGAGCAGTAACCATCTTTCAGTCATTC---AAGTGTTCACCGCTGCGTGGAG-CTGTCTCTGGAC---CTGTCCCTGCACCCT------------------ACACTg--ctttgcccattctctttat-ggagtgttcattctccattttattaatttctgttctttgcta i calJac3.chr19 I 5859 M 1973 s canFam3.chr7 36485369 779 + 80974532 AGAAGCA---AAAAGAAAT--CTGCAACTGCACTTGACTCACCTCTGCTAGTGGAGCTGGTAAGGGACAAAATCATAAACAAGCGAAGTTGGATTCCTGTGCCTCACTACCACCTCTGCACTCAAGGCTG-----------------------GTGC-------CTCTTCCTTCCACTGGGTGACCCCTCACGTGACCCTCTCCA-CCCCCGTCCTCCTTTGGCACCGTTGCTGACAGCTCCCAGTGCCCAGGGTGTCAGTTACCCCCACACCTGCCTCAACACCAAGGTCTTCACAGGCTCTCCCTTCTCCTG---CTCTGTGGCAGGGCAGTGTGGGATTACAATGGTC--------------ATATCCAAGAAccaactaacaacata-gacagttgccattcttcccaaccttatcagcacttgaactgtctgattaaaaaaaaaaaaattggtggccatcaggtgggtgttgaatggcaatattgtagtaactttaatttg-aa-tctccctgattactgggaagg-tggagtatcttttcatgtttgttg------------attattcttctctgtgttgcttttgcccagttttctacagagttgcttctccttttgttgatcaaatca--ggaattctttgtaaactctggatcctaCTCTTCTGTA----CCATTTTTCCAATCCCCACGGATCTGCAAGTCTCCTTTGGTCATCTACCAAGTGTCCAAACGTGCAGGGGGTCTGTGTCTGGGCTCTCT--CCCACTGCTGATGCCAGACTGTCTCGGCCACTTTGGGCTCTGTGAGGtgttttttt------gtttgttt---gt-ttgtttgtttgt-ttgtttg--- i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I a score=3276.000000 s hg38.chr1_KI270759v1_alt 358449 1 + 425601 T s panTro4.chr1 225114242 1 + 228333871 T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226487015 1 - 229942017 T i ponAbe2.chr1 C 0 I 2617 s nomLeu3.chr5 140375338 1 - 143122389 T i nomLeu3.chr5 C 0 I 3 s rheMac3.chr1 17078662 1 - 229590362 t i rheMac3.chr1 C 0 I 9 s macFas5.chr1 223843103 1 - 227556264 t i macFas5.chr1 C 0 I 9 s papAnu2.chr1 16893082 1 - 220367699 t i papAnu2.chr1 C 0 I 9 s chlSab2.chr25 82693365 1 + 85787240 t i chlSab2.chr25 C 0 I 9 s canFam3.chr7 36486148 1 + 80974532 t i canFam3.chr7 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e calJac3.chr19 14409079 1973 - 49578535 M a score=15128.000000 s hg38.chr1_KI270759v1_alt 358450 9 + 425601 TTTTTGGGG s panTro4.chr1 225114243 9 + 228333871 TTTTTGGGG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140375342 9 - 143122389 TTTCTGGGG i nomLeu3.chr5 I 3 C 0 s rheMac3.chr1 17078672 9 - 229590362 tttttgggg i rheMac3.chr1 I 9 C 0 s macFas5.chr1 223843113 9 - 227556264 tttttgggg i macFas5.chr1 I 9 C 0 s papAnu2.chr1 16893092 8 - 220367699 ttttt-ggg i papAnu2.chr1 I 9 C 0 s chlSab2.chr25 82693375 8 + 85787240 ttttt-GGG i chlSab2.chr25 I 9 C 0 s canFam3.chr7 36486149 9 + 80974532 tttttggtg i canFam3.chr7 C 0 I 67 e mm10.chr1 178894242 441 + 195471971 I e calJac3.chr19 14409079 1973 - 49578535 M e ponAbe2.chr1 226487016 2617 - 229942017 I a score=57361.000000 s hg38.chr1_KI270759v1_alt 358459 37 + 425601 GGGCGGGTAGGGgagacaaaggtcttgtcacccaggc s panTro4.chr1 225114252 37 + 228333871 GGGCGGGTAGGGgagacaaaggtcttgtcacccaggc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140375351 37 - 143122389 GGGTGGGTAGGGGAGAGTAAGGTCTtgtcacccaggc i nomLeu3.chr5 C 0 I 106 s rheMac3.chr1 17078681 33 - 229590362 gggtg----ggggagacaaaggtcttgtcacccaggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223843122 33 - 227556264 gggtg----ggggagacaaaggtcttgtcacccaggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16893100 33 - 220367699 gggtg----ggggagacaaaggtcttgtcacccaggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82693383 33 + 85787240 GGGTG----GGGgagacaaaggtctcgtcacccaggc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486158 67 + 80974532 I e calJac3.chr19 14409079 1973 - 49578535 M e ponAbe2.chr1 226487016 2617 - 229942017 I a score=439984.000000 s hg38.chr1_KI270759v1_alt 358496 257 + 425601 tagaatgcagtgatgtggtcatagctcactgcagccttgatctcccgggctcaacagcgatcctcccacctcagcatcctgagtagctgggactacaggtgtgcaccaccatgcctggttaa-tttttaaaaa-------tttttttctagagccagggtctcactgtgttgcccaggctggtcttgaattcctgagctcaagtgatcctcccatcttggcctcccaa--------------------------------------------agtgctgggattacaggcatgagccaccgcacccagc s panTro4.chr1 225114289 257 + 228333871 tggagtgcagtgatgtggtcatagctcactgcagccttgatctcccgggctcaatagcgatcctcccacctcagcatcctgagtagctgggactacaggtgtgcaccaccatgcctggttaa-tttttaaaaa-------ttgttttctagagccagggtctcactgtgttgcccaggctggtctcgaattcctgagctcaagtgatcctcccatcttggcctcccaa--------------------------------------------agtgctgggattacaggcatgagccaccgcacccagc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140375494 258 - 143122389 tggagtgcagtgatgtggtcacagctcactgcagccttgatctcccaggctcaatggtgatcctcccacctcagcatcctgagtagctgggactacaggtgtgcaccgccacgcctggttaattttttaacaa-------tttttttctagaaccagggtctcactgtgttgcccaggctggtcttgaactcctgagctcaagtgatcctcccatctcggcctcccaa--------------------------------------------agtgctgggattacaggcatgagccaccgcacccagc i nomLeu3.chr5 I 106 C 0 s rheMac3.chr1 17078714 264 - 229590362 tggagtgcagtgatgtggtcatagctcactgcagccttgatctcccaggctcaatagcgatcctcccacctcagcatcctgagtaactgggactatgggcgtgcaccaccacgcctggttaa-ttaaaaaaaaaattttttttttttgtagagacagggtctcactgcattgcccaggctggtcttgaactcctgagctcaggtgatcctcccatctcagcctcccaa--------------------------------------------agtgctgggattacaggcctgagccaccgtacctggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223843155 263 - 227556264 tggagtgcagtgatgtggtcatagctcactgcagccttgatctcccaggctcaatagtgatcctcccacctcagcatcctgagtaactgggactatgggtgtgcaccaccacgcctggttaa-ttaaaaaaaaaa-tttttttttttgtagagacagggtctcactgcattgcccaggctggtcttgaactcctgagctcaggtgatcctcccatctcagcctcccaa--------------------------------------------agtgctgggattacaggcctgagccaccgtacctggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16893133 303 - 220367699 tggagtgcagtgatgtggtcatagctcactgcagccttgatctcccaggctcaatagtgatcctcccacctcagcatcctgagtaaccgggactatgggtgtgcaccaccacacctggttaa-tttaaaaaaaa-----ttttttttgtagagacagggtctcactgcattgcccaggctggtcttgaactcctgagctcaggtgatcctcccatctcagcctcccaaagtgctgggattacaggcctgagccagtgcgcccggcctcccagagtgctgggattacaggcctgagccaccgcacctggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82693416 305 + 85787240 tggagtgcagtgatgtggtcatagctcactgcagccttgatctcccaggctcaatagcgatcctcctacctcagcatcctgagtaactgggactatgggtgtgcaccaccacgcctggttaa-ttaaaaaaaaa---ttttttttttgtagagacagggtctcactgcattgtccaggctggtcttgaactcctgagctcaggtgatcctcccatctcagcctcccaaagtgctgggattacaggcctgagccagtgtgcccggcctcccagagtgctgggattacaggcctgagccaccgcacctggc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486158 67 + 80974532 I e calJac3.chr19 14409079 1973 - 49578535 M e ponAbe2.chr1 226487016 2617 - 229942017 I a score=125541.000000 s hg38.chr1_KI270759v1_alt 358753 65 + 425601 cCtactttgccattctttatttctcatcttaaggtggctacttagcttggcagtttccccttctt s panTro4.chr1 225114546 65 + 228333871 cCTACTTTGCCATTCTTTATTTCTCATCTGAAGGTGGCTACTTAGCTTAGCAGTTTCCCCTTCTT i panTro4.chr1 C 0 I 2215 s nomLeu3.chr5 140375752 65 - 143122389 cCtactttgccattctttatctcccatcttaaggtggctacttagcttagcagtttccccttctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17078978 65 - 229590362 catactttgctattctttatctcccatcttaaggtggctatatagcttagcagtttccctctctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223843418 65 - 227556264 catactttgctattctttatctcccatcttaaggtggctatatagcttagcagtttccctctctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16893436 65 - 220367699 catactTTGCTATTCTTTATCTCCCATCTTAAGGTGGCTATATAGCTTAGCAGTTTCCCTTTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82693721 65 + 85787240 cAtactttgctattctttatctcccatcttaaggtggctatatagcttagcagtttccctttctt i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36486225 61 + 80974532 tttgcttttctattctttatctc-catctgaagatgcctccttgatgtaatattctctctct--- i canFam3.chr7 I 67 C 0 e mm10.chr1 178894242 441 + 195471971 I e calJac3.chr19 14409079 1973 - 49578535 M e ponAbe2.chr1 226487016 2617 - 229942017 I a score=199958.000000 s hg38.chr1_KI270759v1_alt 358818 138 + 425601 gttctgtaagcacc--------tacgttgctctctaagtactgctttgtctgtatcctcaagttctggtaatgacaggtattttcactatcattcactcaaaatattttccatttctcattgtaattAT------CAttttttgagacaggg s nomLeu3.chr5 140375817 144 - 143122389 gttctataagcacc--------tacgttgctctctaagtactgctttgtctgtatcctcaagttctggtaatgacaggtattttcactatcattcgctcaaaacattttccatttctcattttaattATTATTATCAttttttgagacagga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17079043 144 - 229590362 gttctataagcacc--------tacattgctcgctaagtactgctttgtctgtatcctaaagttgtggtaatgacaggtattttcactatcatttgcttaaaatattttccatttcacattTTTTAAATTATTATCATGttttgagacaggg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223843483 144 - 227556264 gttctataagcacc--------tacattgctcgctaagtactgctttgtctgtatcctaaagttgtggtaatgacaggtattttcactatcatttgcttaaaatattttccatttcacattttTTAAATTATTATCATGTTttgagacaggg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16893501 144 - 220367699 GTTCTATAAGCACC--------TACATTGCTCGCTAAGTACTGCTTTGTCTGTATCCTAAAGTTGTGGTAATGACAGGTATTTTCACTAtcatttgcttaaaatattttccatttcacatttttaaaattattatcatgttttgagacaggg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82693786 142 + 85787240 gttctataagcacc--------tacattgctcactaagtactgctttgtctgtatcctaaagttgtggtaatgacaggtattttcactatcatttgcttaaaatattttccatttcGCAtttttt--tttattattatgttttgagacaggg i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36486286 143 + 80974532 gcaatgtaagcacttaattctgtacattgcccactaggtactgctttgtctgtgtcctcaagttttgataatgatgatgatttccattctcactagttcaacattctttccagattccattatat---------ttactttttgatccatgg i canFam3.chr7 C 0 I 148 e mm10.chr1 178894242 441 + 195471971 I e calJac3.chr19 14409079 1973 - 49578535 M e ponAbe2.chr1 226487016 2617 - 229942017 I e panTro4.chr1 225114611 2215 + 228333871 I a score=187829.000000 s hg38.chr1_KI270759v1_alt 358956 135 + 425601 tctcattctgtcactgaagctggagtgtagtggtgcgatcttggctcactgcagccttgacctgctgggctcaagcaatccacctgcctcaacctcctgtagct-gggactacaggcgtgtgccaccatccctggc s nomLeu3.chr5 140375961 135 - 143122389 tctcattctgtcactgaagctggagtgtagtggtgcgatcttggctcactgcagccttgacctgctgggctcaagcaatccgcctgcctcaacctcctgtagct-gggactacaggcacgtgccaccatccctggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17079187 136 - 229590362 tctcattctgtcactgaagctggagtgtagtggtgcgatcttggctcactgcagccttgacctgctgggctcaagcaatccacctgcctcaacctcctgtagctggggactacaggcacgtgccaccatcccaggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223843627 135 - 227556264 tctcattctgtcactgaagctggagtgtagtggtgcgatcttggctcactgcagccttgacctgctgggctcaagcaatccacctgcctcaacctcctgtagct-gggactacaggcacgtgccaccatcccaggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16893645 135 - 220367699 tctcattctgtcactgaagctggagtgtagtggtgcgatcttggctcactgcagccttgacctgctgggctcaagccatccacctgcctcaacctcctgtagct-gggactacaggcacgtgccaccatcccaggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82693928 135 + 85787240 tctcattctgtcactgaagctggagtgtagtggtgcgatcttggctcactgcagccttgacctgctgggctcaagcaatccacctgcctcaacctcctgtagct-gggactacaggcacgtgccaccatccctggc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14409079 1973 - 49578535 M e ponAbe2.chr1 226487016 2617 - 229942017 I e panTro4.chr1 225114611 2215 + 228333871 I a score=672.000000 s hg38.chr1_KI270759v1_alt 359091 12 + 425601 ttttc-----------------------ttttttc s panTro4.chr1 225116826 12 + 228333871 ttttc-----------------------ttttttt i panTro4.chr1 I 2215 C 0 s nomLeu3.chr5 140376096 5 - 143122389 ------------------------------tTGtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17079323 11 - 229590362 --ttc----------------------tttttttt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223843762 33 - 227556264 --ttctttttttttttttttttttttttttttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16893780 10 - 220367699 --ttc-----------------------ttttttt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82694063 15 + 85787240 --tTC------------------tttttttttttt i chlSab2.chr25 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14409079 1973 - 49578535 M e ponAbe2.chr1 226487016 2617 - 229942017 I a score=824372.000000 s hg38.chr1_KI270759v1_alt 359103 378 + 425601 tttttttttttttt--tggagacagagtctcactctgtt-gtcc--gggctggagtgcagtggcatgatcttggctcactgcaacctctgtctt-ctgggttcaagtgattctcctgcctcagccccccgagtagccgggattgtttgcgcctgccaccatgcccagctaatttttgtatttttagtagagatggggttttg-catgttg-ccaggctgg--tctcaaactcctggcctccagtgatccactccctgcctcagcctcccaaagtgctggaattacaggtgtgagccactgtgcctggccCATTTTAATTATTTTGTGATCCGTGGGTTATTTAGAAATGTATTTACTAATCGCCacagttaagttacttggaa----tttgt s panTro4.chr1 225116838 384 + 228333871 ttttttttttttttactggagacagagtctcactctgtttgtcccggggttggagtgcagtggcatgattttggctcactgcaacctctgtctttctgggttcaagtgattctcctgcctcagccccccgagtagccaggattattggcgcctgccaccatgcccagctaatttttgtatttttagtagagatggggttttg-catgttg-ccaggctgg--tctcaaactcctggcctccagtgatccactccctgcctcagcgtcccaaagtgctggaattacaggtgtgagccactgcgcctggccCATTTTAATTATTTTGTGATCCGTGGGTTATTTAGAAATGTATTTACTAATCGCCacagttaagttacttggaa----tttgt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140376101 382 - 143122389 tttcttttcttttt--tggagacagagtctcactctgtt-gtcc--aggctggagtgcagtggcaggatcttggctcactgcaacctctgcctg-ctgggttcaagtgattctcctgcctcagccccccgagtagctgggattattggcgcctgccaccatgcccagctaatttttgtatttttagtagagatggggttttgccatgttgcccagactggtctctcaaactcctggcttccagtgatccaccccctgcctcagcctcccaaagtgctggaattacaggtgtgagccatcgcgcctggccCATTTTAATTATTTTGTCATCCATGGGTTATTTAGAAATGTATTTACTACTCGCCacagttaagttacttggaa----tttgt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17079334 382 - 229590362 tttttttttttttt--tggagacagaatctcactttgtt-gtcc--aggctggagtgcagtggcacaatcttggctcactgcaacctctgtccg-ccaggttcaagtgattctcctgcctcagccccccgagtagctgggattattggcgcccaccaccatgcccaactaatttttgtattttcagtagagatggggttttgccatgttgcccaggctgg--tcacaaactcctggcctccagtgatccatcccctgtctcagccccccaaagtgctggaattacaggtgtcagccaccgcacctggccCATTTTAATTATTTTGTGATCCATGGGTTATTTAGAAATGTATTTACTAATTGTTGCAGTTAACTTA--TGGAATTAGTTTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223843795 382 - 227556264 tttttttttttttt--tggagacagaatctcactttgtt-gtcc--aggctggagtgcagtggcacaatcttggctcactgcaacctctgtccg-ccaggttcaagtgattctcctgcctcagccccccgagtagctgggattattggcgcccaccaccatgcccaactaatttttgtattttcagtagagatggggttttgccatgttgcccaggctgg--tcacaaactcctggcctccagtgatccatcccctgtctcagccccccaaagtgctggaattacaggtgtcagccaccgcacctggccCATTTTAATTATTTTGTGATCCATGGGTTATTTAGAAATGTATTTACTAATTGTTGCAGTTAACTTA--TGGAATTAGTTTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16893790 382 - 220367699 tttttttttttttt--tggagacagaatctcactttgtt-gtcc--aggctggagcgcagtggcacaatcttggctcactgcaacctctgtccg-ccaggttcaagtgattctcctgcctcagccccccgagtagctgggattattggcgcccaccaccatgcccaactaatttttgtattttcagtagagatggggttttgccatgttgcccaggctgg--tcacaaactcctggcctccagtgatccatcccctgtctcagccccccaaagtgctggaattacaggtgtcaaccaccgcacctggccctttttaattattttgtgatccatgggttatttagaaatgtatttactAATTGCCGCAGTTAACTTA--TGGAATTAGTTTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82694078 382 + 85787240 ttttcgtttttttt--tggagacagaatctcacttcatt-gtcc--aggctggagtgcagtggcacaatcttggctcactgcaacctctgtccg-ccaggttcaagtgattctcctgcctcagccccccgagtagctgggattattggcgcctgccaccacgcccaactaatttttgtattttcagtagagatggggttttgccatgttgcccaggctgg--tcacaaacttctggcctccagtgatccatcccctgtctcatcccctcaaagtgctggaattacaggtgtgagccaccgcacctggccCATTTTAATTATTTTGTGATCCATGGGTTATTTAGAAATGTATTTACTAATTGCCGCAGTTAACTTA--TGGAATTAGTTTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14411094 376 - 49578535 ttgtttgtttgttt--ttgagacagagtctcactctgtt-gtcc--aggctggagtgcaggggcacaatgtcagctcactgcaacctctgcctg-ccaggtccaagtgattctcatgcctcagcctcctgagtagctgggattattggcacctgccaccaagcccagctaatttttacatttttagttgagatgggattttgacatgttgcccaggctgg--tctggaactcctggcctcaagtaatccaccccctgcctcagcctcccaaagtgctgagattata-gcgtgagccaccgcacctggccCATTTTAATTGTATTTTGATTGAT-GGTTCTTTAGAAATGTATTTACTAAC--CCACAGTTAAGTGACTTGGGATTAGT---- i calJac3.chr19 M 1973 I 18 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e ponAbe2.chr1 226487016 2617 - 229942017 I a score=157291.000000 s hg38.chr1_KI270759v1_alt 359481 99 + 425601 tccttttgagccttttaagccttgcaaaggcaggtgcagcacagcctagggctgctttgatcccactgttagcgcagtaaccttctgaggacgctGAGG s panTro4.chr1 225117222 98 + 228333871 tccttttgagctttttaagccttgcaaaggcaggtgcagcagagcctagggctgctttgatcccactgttag-gcagtacccttctgaggactctGAGG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140376483 99 - 143122389 tccttctgagccttttaagccttgcaaaggcaggtgcagcacagcctagggctgctttgaccccactgttagcgcagtatccttctgaggactctGAGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17079716 97 - 229590362 TCCTCTTGAGCCTTTTAAGCCTTGCAAAGTCAGGTGCAGCACAGC--AGGGCTGCTGTGACCCCACCGTTAGGGGAGTACCCTTCTGAGGACTCAGAGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223844177 97 - 227556264 TCCTCTTGAGCCTTTTAAGCCTTGCAAAGTCAGGTGCAGCACAGC--AGGGCTGCTGTGACCCCACCGTTAGGGGAGTACCCTTCTGAGGACTCAGAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16894172 97 - 220367699 TCCTCTTGAGCCTTTTAAGCCTTGCAAAGTCAGGTGCAGCACAGT--AGGGCTGCTGTGACCCCACCGTTAGGGGAGTACCCTTCTGAGGACTCGGAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82694460 97 + 85787240 TCCTCTTGAGCCTTTTAAGCCTTGCAAAGTCAGGTGTGGCACTTC--CGGGCTGCTCTGACCCCACCGTTAGGGCAGTGCCCTTCTGAGGACTCGGAGG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14411470 18 - 49578535 I e ponAbe2.chr1 226487016 2617 - 229942017 I a score=59923.000000 s hg38.chr1_KI270759v1_alt 359580 33 + 425601 AATGATTtacatacactcacatat----------atatgtaca s panTro4.chr1 225117320 33 + 228333871 AATGATTtacatacactcacatat----------atatgtaca i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140376582 33 - 143122389 AATGatttacatatactcacatat----------atatgtaca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17079813 33 - 229590362 AGTGATTTACATACACTCAGACAT----------GTATGTACA i rheMac3.chr1 C 0 I 934 s macFas5.chr1 223844274 33 - 227556264 AGTGATTTACATACGCTCAGACAT----------GTATGTACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16894269 33 - 220367699 AGTGATTTACATACGCTCAGACat----------atatgtaca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82694557 33 + 85787240 AATGATTTACATACGCTCAGACAC----------ATATGTACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14411488 43 - 49578535 AATGATATATAGatacacacacacacacccaatgatatataga i calJac3.chr19 I 18 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e ponAbe2.chr1 226487016 2617 - 229942017 I a score=14862.000000 s hg38.chr1_KI270759v1_alt 359613 16 + 425601 tccattatatacacca s panTro4.chr1 225117353 16 + 228333871 cccattatatacacca i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140376615 16 - 143122389 tccataatatatacca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223844307 16 - 227556264 CCCGCAATATATACCC i macFas5.chr1 C 0 I 2 s papAnu2.chr1 16894302 16 - 220367699 cccgtaatatataccc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82694590 16 + 85787240 CCCATAATATATACCC i chlSab2.chr25 C 0 I 2 s calJac3.chr19 14411531 10 - 49578535 -----tatatacaca- i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e rheMac3.chr1 17079846 934 - 229590362 I e ponAbe2.chr1 226487016 2617 - 229942017 I a score=65808.000000 s hg38.chr1_KI270759v1_alt 359629 210 + 425601 tatatgt-----------------tatataca--------------------------------------------------------atatacacacata-----------cccaatatgtatataca---cccaatgttatatat-atatatacacacccccaatatatatatacacccaatgatatatatatacacacacacccaatatatatatacacccaatgttatatatagacacacacac--------tcaatatatatatacacacccaatgttatac--atatatacacacac-ac------caa s panTro4.chr1 225117369 236 + 228333871 tatatatatatatatacccaatgatatataca--------------------------------------------------------atatacacacata-----------cccaatatgtatataca---cccaatgttatatat-atatacacacacccccaatatatatatacacccaatgatatatatatacacacacacccaatatatatatacaCCCAATGTTATATATAGACACACACACACTCTCTCTCTATATATATATACACTCCTAATGTTATAT--ATATACACACACACCGC------CAA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140376631 116 - 143122389 tgtatat--------------------------------------------------------------------------------------------------------------------------------------atatat-atatatatatacc------atgtatat----------atatatatatatatatatacc--atgtatatata----------tatatatatatatatatac--------------catgtata------------tatat--atatatatatacac-ac------c-a i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223844325 274 - 227556264 TATATAT--------ACCCGATGATATATATAATATTAGGGCAGTACCCTTCTGAGGACTCCGAGGAATGATTTAcatacgctcagatatatatgtacacccataatatataccctatatatatataca---cccaatgatatatataatatacacacacccccaa----tatatatacccaatgttacatctatagacacacacctattatgtatatacacccaatgatctatatacacacacacac--------------tatatatatacacccaatgtttttt--atatatacacactc-aa--------- i macFas5.chr1 I 2 C 0 s chlSab2.chr25 82694608 212 + 85787240 TATATAT--------ACCTGATGATATATATA--------------------------------------------------------ATATACACACACC-----------CCCAATATATATATACA---CCCAATGTTACAT---CTATAGACACACACCTAATATGTATATACACCCAATG--ATCTATATACACACACACACACTATATATATACACCCAATGTTTTTTATATATATACACTC--------------AATATATATACACCCAATGTTATAT--ATGTACACACACAC-ACCCCCAA--- i chlSab2.chr25 I 2 C 0 s calJac3.chr19 14411541 160 - 49578535 -----------------cacataatagatacc--------------------------------------------------------atatatatacaca--------------------cacacacagcccccaatgatatgtag-atatacacacac---------------acacccaatgatatatagatatatacacac-----------acacacccaatgatatatagatacacacacac-------------------------acccaatgatatatagatatatacacaccc-at--------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e rheMac3.chr1 17079846 934 - 229590362 I e papAnu2.chr1 16894318 0 - 220367699 C e ponAbe2.chr1 226487016 2617 - 229942017 I a score=22058.000000 s hg38.chr1_KI270759v1_alt 359839 62 + 425601 tatatatacacccagtgttatat-----------------------------------------atacacacaccct-----atatgtatacacccaatgatatatat------ s panTro4.chr1 225117605 62 + 228333871 TATATATACACCCAATGTTATAT-----------------------------------------ATACACACACCCT-----ATATGTATACACCCAATGatatatat------ i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140376747 36 - 143122389 tgtatata----------tatat-----------------------------------------atatacacaccat-----gt----------------atatatat------ i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223844599 67 - 227556264 tatatatata-ccaatgttatatat------------gtac-----------------------acacacacacaccca---atatatatacacccaatgttatat-------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16894318 97 - 220367699 tatatatatacccgatgatatatataatattaggGCAGTACCCTTCTGAGGACTCGGAGGAGTGATTTACATACGCTCAGACATGTATGTACACCCG----------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82694820 64 + 85787240 TATATATACACCCAATGTTATATCT---------------------------------------ATATACACACCCT-----ATATATATACACCCAATGATATATAT------ i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14411701 54 - 49578535 aatagatac---------catat-----------------------------------------atatacat----------acacatacacacccaatgatatataggtatat i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e rheMac3.chr1 17079846 934 - 229590362 I e ponAbe2.chr1 226487016 2617 - 229942017 I a score=151236.000000 s hg38.chr1_KI270759v1_alt 359901 462 + 425601 acacatacacaca----atatatatac--acccaatgatatatat---------------------------------------at---------tacacacacc-------atatatatatacaccctatgatatacatacacacataccc----------------ccatatatatacacccaa-------------------tgatatac---ata-----------------------------------------cacacacacactca-atatatatatacacccaatgatgtat----acatacacacaccc------catatatatatactcaatgacataaata-------atatgcacaccca---------atatatatacacccaatgatatatat----tacacacac-----------------------cctatg----atatacatacacacata-cccccatatatatacacccaatga---------------tata----catacacacactcaatatatatatatacccaatg-atatatacatac--acacacccca---tatatatata--cccaatgacata----------at-----------acacacaccca---atat------------------atatat----acccaatg------------------atatatataatatacacacac---------------------------tatatagatacacccaatgatatatctatac s panTro4.chr1 225117667 488 + 228333871 acacatacacacactcaatatatatac--acccaatgatatatat---------------------------------------at---------tacacacacc-------atatatatatacaccctatgatatacatacacacataccc----------------ccatatatatacacccaa-------------------tgatatac---ata-----------------------------------------cacacacac--tca-atatatatatacacccaatgatgtat----acatacacacaCCC------CATATATATATACTCAATGACATAAATA-------ATACACACACCCA---------atatatatatacccaatgatatatataatatacacacac----------tatatagatacacccaatg----atatacatacacacac--ccactatatatatacacccaatga---------------tatatatacacacacacactcaatatatatatacacccaatg-atatatacatac--acacacccca---tatatatata--cccaatgacatatata------at-----------acacccaccca---atat------------------atatat----acccaatg------------------atatatataatatacacccac---------------------------tatatagatacacccaatgatatnnnnnnnn i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140376783 467 - 143122389 atatatatatacc----atgtatatat----------atatatat---------------------------------------a----------tatatatacc-------gtgtatat--------------------------------------------------atatatatatacccaa-------------------tgatatatacaata-----------------------------------------tacacacacaccca---atatatatacacccaatgttatat----atatacacacacacacctaatatatatatatacccaatattatatata-tac---acacacacaccca-------atatatatatacacccaatattatatat---atacacacactctctctctatatatatatacacccaatgttatatatatatacacacacatccccaatatatataca-ccagtgt---------------tata----tatacacacaccc--tatatgtatacacccaatg-atatatatatacatacacacaccaaagtatatataca--cctaatgatatatata-----ctt-----------acacacaccct---atat------------------atatatacacaccctatg------------------atatacat-acataccccc------------------------------atatatatacacccaacgatatacatacac i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223844666 442 - 227556264 atatatacaccct----atatatatac--acccaatgatatatat---------------------------------------aca--------tacacacaccca-----atatatatatacacccaatgatatatatacacacata--c----------------ccccatctacacacccga-------------------tgatatac---ata-----------------------------------------catacacac--tca---atatatatacacccaatgatatat----atatacacac----------cccatatatgtacccaatgatatatataatat---atacgcacaccca-----------atatatatacctaatgatatata-----------------------------------------------atatacacacac----------tatatatatacacccaatga-----------------ta----tacacacacaccctatatatatacacacccagtg---atatagacac--acacacccaa---tatatatacacacccaatgatatgtatacac-acacatccaatacatacatacacccaatgatac------------------atatat----acaca----------------------tatatat-acacacacaccc---------------------------tatatatacacactcaatgatatat------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16894415 508 - 220367699 CAatatataccct----atatatat----acccgatgatatatataatattaggGCAGTACCCTTCTGAGGACTCCGAGGAATGATT--------TACATACGCTCA----Gatatatatgtacaccc-gtaatatata-----------------------------ccctatatatatacccga-------------------tgatatat---ataATGTTAGGGCAGTACCCTTCTGAGGACTCGGAGGAATGATTTACATACGC--TCAGatatatatgtacaccc-ataatatatacccatatatata-------------tatatatatacccaatgatatatataatat---acacacaccccca-----------atatatatacccaatgttacatct----------------------------------------------atagacacacac------ctattatgtatatacacccaatga---------------tcta----tatacacacacactatatatatatacacccaatg-ttttttatatat--acacactcaa---tatatattta---ccaatgttatatatgtac-acac-----------acacacaccca---atat------------------atatac----acgcaatg------------------ttatatat-atatacataccc---------------------------tatatatatacacccaatgatatat------ i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14411755 583 - 49578535 acacacacacCCA----ATATGTATACACACCCAATGatatatag---------------------------------------atatgtgtatgtacatatatgtatatatatgtgtgtatacacacacacacatataCActcacactcccgacattaggtgatctgccctcctcatcctcccaaagtgctgggattataggagtgagccac---atg-----------------------------------------cgcACACAC--ACACACatatatgtgtg--------tatat----atgtataca-----------caaacatatatactca----tatatatatCATtgggtgtgcatgtgcatgtgtgtatgtgtatatatatcattgggtgtatat--------------------gtgtgtgtgtatatatcccat-----atatgtgtgtgtg-----tttgcgtgtatatata-tcattgggggtctataggtctgtgta----tataaatacatgatatatgtgcaaatacatgatatacacacatatac--acacactcta---tatatcaatg--acatatgatctaaatacatgatat-----------aca---ACGCA---ATATCGTTGGTGCGGCatgtgcatgtat----atatattgttgggtgacagtgtgtatatatatat-acatatatatccgtgtgtgtctgtgtgtatCATTGGGCGtatatacatatatac---------------- i calJac3.chr19 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e rheMac3.chr1 17079846 934 - 229590362 I e chlSab2.chr25 82694884 0 + 85787240 C e ponAbe2.chr1 226487016 2617 - 229942017 I a score=47618.000000 s hg38.chr1_KI270759v1_alt 360363 158 + 425601 acacacacacccaatatatat--acacccaatgatatatatactcacacacgccctatatatatttacacacctaatgatat-----atat-acacacacaccctatatatatatacacccagtgata---tatacacacac---------------------accatatatatatacacacac-----acatac s panTro4.chr1 225118155 104 + 228333871 nna------------------------------------------------------tatatatttagacaccaaatgatat-----atac-acacacaaaccctatatatata--caCCCAGTGata---tatacacacac---------------------acacaccatatatacacacac-----acatac i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140377250 149 - 143122389 acagacactcaatatatatat--acacccaatgatatatacatacacacacc-----cctatatatatatacccaatgacataaataatat-acacacacacccaatatatata--taaccaatgatatactatacacacac---------------------acacccaatatat---------------atac i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223845108 124 - 227556264 atacacacacccaaaatatat----actcaattatatatatatacacacac---------------acacaccc-----tat-----atat-atata--------------------atccaatgatata-tatatacacac-------acacacc-------acatat-atatatacacacac-----acacac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16894923 179 - 220367699 atacatacacccaatatatatatacacccaatgatatatatacacacatacc-----cccatc--tacacacccgatgatat-----acat-acatacacactcaatatatata--cacccaatgatata-tatatacacaccccatatatgtacccaatgatatatataatatatacgcacacccaatatatat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82694884 137 + 85787240 ACATACACACTCAATATATAT--ACACCCAATGATATATATACACACACACC-----CCTATA--TATATACCCAATGATAT-----ATATAATATACACACAC-------------ACCTA-----ATA-TATATACGTA--------ATG-----------ATATATAATATACACACACT------ATATAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14412338 135 - 49578535 atatatacat---atgtatat--aCCCCCAATGATAGata----cacacacc-----ccaaga--tatacatt------tgt-----gtat-acatatatatggcatatatatacacacacaatgatata-tatacgcacac---------------------ac-----gcacatgcccaccc-----gcaTGC i calJac3.chr19 C 0 I 2065 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e rheMac3.chr1 17079846 934 - 229590362 I e ponAbe2.chr1 226487016 2617 - 229942017 I a score=20994.000000 s hg38.chr1_KI270759v1_alt 360521 23 + 425601 acccagtgatatat-acatacaca s panTro4.chr1 225118259 23 + 228333871 acccagtgatatat-acatacaca i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140377399 23 - 143122389 acccaatgatatat-atacacaca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223845232 23 - 227556264 atccagtgatatac-atatacaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16895102 24 - 220367699 acctaatgatatataatatacaca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695021 22 + 85787240 ACCCAATGATATAC-ACACACAC- i chlSab2.chr25 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14412473 2065 - 49578535 I e rheMac3.chr1 17079846 934 - 229590362 I e ponAbe2.chr1 226487016 2617 - 229942017 I a score=15024.000000 s hg38.chr1_KI270759v1_alt 360544 52 + 425601 tacccgatatatatatatacaccccatgatacatatatac------------------------------acacacacccaa s panTro4.chr1 225118282 50 + 228333871 cacccgatatatatata--caccccatgatacatatatac------------------------------acacacacccaa i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140377422 43 - 143122389 caccatatatatatatt---------ttatatatatatac------------------------------acccacacacac i nomLeu3.chr5 C 0 I 15 s papAnu2.chr1 16895126 76 - 220367699 --tactatatatat----acacccaatgatatacacacacaccctatatatatacacacccaggatatagacacacacccaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695043 45 + 85787240 ---CCTATATATATACACACACCCAGTGATATATAC----------------------------------ACACACACCCAA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14412473 2065 - 49578535 I e rheMac3.chr1 17079846 934 - 229590362 I e macFas5.chr1 223845255 0 - 227556264 C e ponAbe2.chr1 226487016 2617 - 229942017 I a score=87154.000000 s hg38.chr1_KI270759v1_alt 360596 94 + 425601 tatatatatgtacacccaatgatata----------------------------------tatacacacacccccaatatatatacacacccaatgatatatata------------tacacacacaccctatatatata s panTro4.chr1 225118332 126 + 228333871 tatatatatgtacacacaatgatatacacacacaccctatattatatacacccaatgatatatacacagacacccaatatatatacacacccagtgatatataca--------------cacacacatccaatacataca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226489633 92 - 229942017 Tatatatatatacacccaatgata------------------------------------catacacacacacccaatatatatacacacccaatgatatataca------------cacacacacatccaatacataca i ponAbe2.chr1 I 2617 C 0 s nomLeu3.chr5 140377480 92 - 143122389 tatatatatatacacccaatgatata----------------------------------cacacacacacacccaatatatatatacacccaatgatatatata--------------cacacacactctatatatata i nomLeu3.chr5 I 15 C 0 s papAnu2.chr1 16895202 104 - 220367699 --tatatatacacacccaatgatatg----------------------------------tatacacacacatccaatacatacatacacccaatgatacatatatacacatatatatacacacacaccctatatataca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695088 100 + 85787240 --TATATATACACACCCAATGATATG----------------------------------TATACACACACATCCA----ATACATACACCCAATGATACATATATACACATATATATACACACACACCCTATATATACA i chlSab2.chr25 C 0 I 30 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14412473 2065 - 49578535 I e rheMac3.chr1 17079846 934 - 229590362 I e macFas5.chr1 223845255 0 - 227556264 C a score=11596.000000 s hg38.chr1_KI270759v1_alt 360690 32 + 425601 tatacacccaatgatacatatatata----------caatat s panTro4.chr1 225118458 24 + 228333871 tatac--ccaatgatacatatatata---------------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226489725 40 - 229942017 tatac--ccaatgatacatatatatatacacacacccaatat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140377572 40 - 143122389 tacac--ccaatgatatatatatacacacacacaccatatat i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16895306 28 - 220367699 --cac--tcaatgatatatatacacacaccca---------- i papAnu2.chr1 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14412473 2065 - 49578535 I e rheMac3.chr1 17079846 934 - 229590362 I e chlSab2.chr25 82695188 30 + 85787240 I e macFas5.chr1 223845255 0 - 227556264 C a score=61166.000000 s hg38.chr1_KI270759v1_alt 360722 79 + 425601 atatataaacccaatgatacatatacacacacacccaatatgcatatac-acccaatgatatatacacacacacacacac s panTro4.chr1 225118482 78 + 228333871 -tatataAACCCAATGATacatatacacacacacccaatatacatatac-acccaatgatatacacacacacacacacac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226489765 75 - 229942017 atatataaacccaatgatacatacacacacacCCCCCCAATATATATAT-ACCCAATGATATAT----ATACACACACAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140377612 62 - 143122389 atatatgtatactctgatgtat-----------------atatatatac-actcaatgatatatatatacacacacacac i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16895334 80 - 220367699 aaatatatactcaattatatatatacacacacacaccctatatatatataacccaatgatatatatacacacacacacat i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695218 76 + 85787240 AAATATATACTCAATTTTATATATACACACACACCC----TATATATATAACCCAATGATATATATACACACACACACAT i chlSab2.chr25 I 30 I 13 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14412473 2065 - 49578535 I e rheMac3.chr1 17079846 934 - 229590362 I e macFas5.chr1 223845255 0 - 227556264 C a score=9078.000000 s hg38.chr1_KI270759v1_alt 360801 26 + 425601 acaccca------atatatatataacccagtg s panTro4.chr1 225118560 26 + 228333871 acacCCA------ATATATATATACCCCAGTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226489840 26 - 229942017 ACCCCCA------ATATATATATAACCCAATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140377674 32 - 143122389 acacacacctaatatatatatataACCCAATG i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16895414 17 - 220367699 atatcca------gtg-atataca-------- i papAnu2.chr1 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14412473 2065 - 49578535 I e rheMac3.chr1 17079846 934 - 229590362 I e chlSab2.chr25 82695294 13 + 85787240 I e macFas5.chr1 223845255 0 - 227556264 C a score=910.000000 s hg38.chr1_KI270759v1_alt 360827 1 + 425601 a s panTro4.chr1 225118586 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226489866 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140377706 1 - 143122389 A i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17080780 1 - 229590362 a i rheMac3.chr1 I 934 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14412473 2065 - 49578535 I e chlSab2.chr25 82695294 13 + 85787240 I e papAnu2.chr1 16895431 0 - 220367699 C e macFas5.chr1 223845255 0 - 227556264 C a score=7475.000000 s hg38.chr1_KI270759v1_alt 360828 8 + 425601 tataca------ca s panTro4.chr1 225118587 14 + 228333871 TATACATATACACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226489867 12 - 229942017 TATACATATA--CA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140377707 8 - 143122389 TATACA------CA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17080781 8 - 229590362 tataca------aa i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16895431 8 - 220367699 tataca------aa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695307 8 + 85787240 TATACA------AA i chlSab2.chr25 I 13 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14412473 2065 - 49578535 I e macFas5.chr1 223845255 0 - 227556264 C a score=24444.000000 s hg38.chr1_KI270759v1_alt 360836 9 + 425601 cacacacgc s panTro4.chr1 225118601 9 + 228333871 CACACACGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226489879 9 - 229942017 CACACACGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140377715 9 - 143122389 CACACACGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17080789 9 - 229590362 cacacacgc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223845255 9 - 227556264 cacacacgc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16895439 9 - 220367699 cacacacgc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695315 9 + 85787240 CACACACGC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178894242 441 + 195471971 I e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14412473 2065 - 49578535 I a score=27780.000000 s hg38.chr1_KI270759v1_alt 360845 10 + 425601 aTGCCCTGGG s panTro4.chr1 225118610 10 + 228333871 ATGCCCTGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226489888 10 - 229942017 GTGCCCTGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140377724 10 - 143122389 ATGCCTTGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17080798 10 - 229590362 aTGCCCTGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223845264 10 - 227556264 atgCCCTGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16895448 10 - 220367699 aTGCCCTGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695324 10 + 85787240 ATGCCCTGGG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178894683 10 + 195471971 ATGACCTGTC i mm10.chr1 I 441 C 0 e canFam3.chr7 36486429 148 + 80974532 I e calJac3.chr19 14412473 2065 - 49578535 I a score=14471.000000 s hg38.chr1_KI270759v1_alt 360855 6 + 425601 TATAAA s panTro4.chr1 225118620 6 + 228333871 TATAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226489898 6 - 229942017 TATAAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140377734 6 - 143122389 TATAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17080808 6 - 229590362 TATGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223845274 6 - 227556264 TATGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16895458 6 - 220367699 TATGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695334 6 + 85787240 TATGAG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178894693 6 + 195471971 AATCAG i mm10.chr1 C 0 C 0 s canFam3.chr7 36486577 6 + 80974532 TATTAG i canFam3.chr7 I 148 C 0 e calJac3.chr19 14412473 2065 - 49578535 I a score=442750.000000 s hg38.chr1_KI270759v1_alt 360861 140 + 425601 CAGATCTCCTCACTCTGTCTGCTTGAACACAGACTTCCAATCCCTTCTTGGCTTCAAGGATTATTCCAACT---CTCCTTTCTGTGGCCTTGCTTGTTTTTTTGTACACATGTGGAT-TAGAGCTCAACCAGAGGGCTCCAGAG s panTro4.chr1 225118626 140 + 228333871 CAGATCTCCTCACTCTGTCTGCTTGAACACAGACTTCCAATCCCTTCTTGGCTTCAAGGATTATTCCAACT---CTCCTTTCTGTGGCCTTGCTTGTTTTTTTGTACACATGCGGAT-TAGAGCTCAACCAGAGGGCTCCAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226489904 140 - 229942017 CAGATCTCCTCACTCTGTCTGCTTGAACACAGACTTCCAATCCCTTCTTGGCTTCGAGGATTATTCCGACT---CTCTTTTCTGTGGCCTTGCTTGTTTTTCTGTACACATGCGGAT-TAGAGCTCAACCAGAGGGCTCCAGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140377740 136 - 143122389 CAGATCTCCTCACTCTGTCTGCTTGAACACAGACTTCCAATCCCTTCTTGGCTTCAAGGATTATTCCGACT---CTCCTTTCTGTGGCCTTGCTTGTT----TGTACACATGCAGAT-TAGAGCTCAACCAGAGGGCTCCAGAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17080814 140 - 229590362 CAGATCTCCTCACTCCATCTGCTTGAACACAAACTTCCAATCCCTTCTTGCCTTCAAGGATTATTCCGACT---CTCCTTTCTGTGGCCTTGCTTGTTTCTTTGTACACGTGCAGAT-TAGAGCTCAACCAGAGGGCTCCAGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223845280 140 - 227556264 CAGATCTCCTCACTCTATCTGCTTGAACACAAACTTCCAATCCCTTCTTGCCTTCAAGGATTATTCCGACT---CTCCTTTCTGTGGCCTTGCTTGTTTCTTTGTACACGTGCAGAT-TAGAGCTCAACCAGAGGGCTCCAGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16895464 140 - 220367699 CAGATCTCCTCACTCTATCTGCTTGAACACAAACTTCCAATCCCTTCTTGCCTTCAAGGATTATTCCGACT---CTCCTTTCTGTGgccttgcttgtttttttgtacACATGCAGAT-TAGAGCTCAACTAGAGGGCTCCAGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695340 140 + 85787240 CAGATCTCCTCACTCTATCTGCTTGAACACAAACTTCCAATCCCTTCTTGGCTTCAAGGATTATTCCAACT---CTCCTTTCTGCGGCCTTGCTTGTTTTTTTGTACACGTGCAGAT-TAGAGCTCAACCAGAGGGCTCCAGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14414538 139 - 49578535 CAGATCTCCTCACACTGTCTGCGGGAACACATACTTTCAGTCCCTTCTTGGCTTCAAGGATTATTCTGACT---CTCCTTTCTGTGGCCTTGCTTGTGTTT-TGTACACATGCAGAT-TAGAGCTCAACCAGAGGGCTCCAGAG i calJac3.chr19 I 2065 C 0 s mm10.chr1 178894699 134 + 195471971 CAGGTCTTCCCACTCTGTCTGCTTAAACATA------CGTTACATTCATG-CTCCTTGGAATA-TCTGACTGTATTTCTATCTGTGATCTGGACGGCTTTTTCTT--GTGTGAAGATCTAGAGCTCACACAAAAAGCTCCACAG i mm10.chr1 C 0 I 4250 s canFam3.chr7 36486583 51 + 80974532 CAGATCTTTCCACTCTGTCAGCTTGAACACACGTT--------ATTTCTGGTCCCATGG------------------------------------------------------------------------------------- i canFam3.chr7 C 0 C 0 a score=1052564.000000 s hg38.chr1_KI270759v1_alt 361001 362 + 425601 AGCTCTTGCTTGCTCTCAGGTCATCTCTGTCTTTTTTTTTTTTCTCTCTTATTCTCTTTCccctcttctatctctccaattctttctttgcatctctctccattcttcccttctgctattttgtcctacaaattttagctgccctgatctccccaaagtctggact---tttccttg--ttcagaaggatgtggctgcctggctctgcttgggtcccctgtcgtgtttgggggcctggaacctctctcctggcagtaagctggggcacttacaaggctcagctcatcttttttcccttctctcagacatgactttcctctgctgcttgttacccagtatcagaaaccca-tttttttttcttatagtt s panTro4.chr1 225118766 361 + 228333871 AGCTCTTGCTTGCTCTCAGGTCATCTCTGTCTTTTTTTTTCTTCTCTCTTATTCTCTCTCCCCTCTTCTatctctccaattctttcttttcatctctctccattcttcccttctgctattttgtcctacaaattttagctgccctgatctccccaaagtctggact---tttccttg--ttcagaaggatgtggctacctggctctgcttgggtcccctgtcatgtttgggggcctggaacctctctcctggcagtaagctggggcacttacaaggctcagctcatcttttt-cccttctctcagacatgactttcctctgctgcttgttacccagtatcagaaaccca-tttttttttcttatagtt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226490044 356 - 229942017 AGCTCTTGCTTGCTCTCAGGTCATCTCTGTCTTTTTTTT--TTCTTTCTTATTCTCTCTCCCTTCTTCTatctctctaattctttctttgcatctctctccattcttcccttctgctattttgtcctacaaattttagctgccctggcctccgccaagtctaggc----tttccttg--ttcagaaggatgtggctgcctggctttgcttgggtcccctgtcgtgtttgggggcctggaacctctctcctggcagtgagctggggcacttacaaggctcaactcatcttttt-cccttctctcagacatgactttcctctgctgcttgttacccagtatcagaaacccattttttttttcttata--- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140377876 355 - 143122389 AGCTCTTGCTTGCTCTCAGGTCATGTCTGTCTTTTTTTTT-TTTTCTCTTATTC----TCCCCTCCTCTCtctctccaattctttctttgcatctccctccgttcttcccttctgctattttgtcttacaaattttagctgccctggcctcccccaagtctgggc----tttccttg--ttcagaaggatgtggctgcctggctctgcttgcatcccctgtcatgtttgggggcctggaacctctctcccggcagtaagctggggcacttagaaggctcagctcatcttttt-cccttctctcaaacatgactttcctctactgcttgttacccagtatcagaaaccca-tttttttttcttagagtt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17080954 349 - 229590362 AGCTCTTGCGTGCTCTCAGGTCATC------TTTTTTTT--TTTTTTCTTATTCTCTCTCCCCTCCTCTCtctctccaattctttctttgcatctctctccattcttcccttctgctatttgctcctacaaattttagctgccctggcctcccccaagtctggac----tttccttg--ttcagaagga--tggctgcctggctctgcttcagtcccttgctgtgtttgggggcctggaacctctctcctggcagtaagctggggcacttacaaggctcagctcatcttttt-cccttctctcaaacatgactttcctctgctgcttgttacccagtatcagaaaccta--ttttttttcttatagtt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223845420 348 - 227556264 AGCTCTTGCGTGCTCTCAGGTCATC-------TTTTTTT--TTTTTTCTTATTCTCTCTCCCCTCCTCTCTCtctccaattctttctttgcatctctctccattcttcccttctgctatttgctcctacaaattttagctgccctggcctcccccaagtctggac----tttccttg--ttcagaagga--tggctgcctggctctgcttcagtcccttgctgtgtttgggggcctggaacctctctcctggcagtaagctggggcacttacaaggctcagctcatcttttt-cccttctctcaaacatgactttcctctgctgcttgttacccagtatcagaaaccta--ttttttttcttatagtt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16895604 353 - 220367699 AGCTCTTGCGTGCTCTCAGgtcatc--tgtctttttttt--ttttttcttattctctctcccctcctctctctctccaattctttctttgcctctctctccattcttcccttctGCTATTTGCTCCTACAAATTTTAGCTGCCCTGGCCTCCCCCAAGTCTGGAC----TTTCCTTG--TTCAGAAGGA--TGGCTGCCTGGCTCTGCTTGGGTCCCTTGCTGTGTTTGGGGGCCTGGAACCTCTCTCCTGGCAGTAAGCTGGGGCACTTACAAGGCTCAGCTCATCTTTTT-CCCTTCTCTCAAACATGACTTTCCTCTGCTGCTTGTTACCCAGTATCagaaaccta--ttttttttcttatagtt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695480 355 + 85787240 AGCTCTTGCTTGCTCTCAGGTCATC--TGTCTTTTTTTT--TTTCTTCTTATTCTCTCCCCCCTCCTCTCtctctccaattctttctttgcatctctctccattcttcccttctgctatttgctcctacaaattttagctgccctggcctcccccaagtctggac----tttccttg--ttcagaagga--tggctgcctggctctgcttcggtcccttgctatgtttgggggcctggaacctcgctcctggcagtaagctggggcacttacaaggctcagctcatcttttt-cccttctctcaaacatgactttcctctgctgcttgttgcccagtatcagaaacctattttttttttcttgtagtt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14414677 342 - 49578535 GGCTCCTGCTGGCTCTCAGGTCAtc-----tctttcttt--ctctctcttattctctct-ccttctctTGtctctccagttctttctttgcatcgctctccattcttcccttttgctatt------------ttgtagccgccctggcctcccccaagtctgaccttc-tctcctta--ttcagcagga--tgtctgcctggctctgcttgggtcccctgtcggatgtgggggcctggaacctccctcctggcagtaagctgggacagttacaaggctcagctcatccattt-cccttctctcaaatatgacgttcctctgctgcctgttacacagtatcagaaacctatttttttctccttatattt i calJac3.chr19 C 0 I 257 s canFam3.chr7 36486634 288 + 80974532 ---------------------------------------AATGCTTGCTTGCTCTCtct--------ctctctctccagctcttttctttta---------------cttttcttctattttgccctacaaattgtagctgccttggcctccccaaattctgacctttgtctcactggtctcagtaggg--taatggc---actccttctgaacctccttctttgtctcagggcct---------ctctaggaggtgagctggagtgctcgcagggctcccatcattagttt-ctcttctctcaaagattacttttctctgctgctc-ttgcccagtatccaagaccca--tttttgtgctaatattt i canFam3.chr7 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I a score=2518293.000000 s hg38.chr1_KI270759v1_alt 361363 771 + 425601 tgtttggttttctagttgcttaaggttggagggtaaatccagtttctattttt-------------caaagatggccagaagcagaaatttcgtcatttgtgat-------tttttttt----------gtttatttctttaaacagtttaattgtctctaacatgttaatcaactttttgttgtttatttgtgatctaggtttgaacatctcattcttgcatctgtggtttctgctggctctttctcatggtgccgtgtttc----tt--tgtttatttgtgtctgggggctactcattttcactggcattttatttgtgagaattctgcaagctctgggataaagatagtttactccagacagcatttgtgtttacttctaccagg-------------tgccagttgaggatagtctaaattacattctcagcttgaaatatttttgaccacccagatatggagaactaagcgtgcaaacctgcatgtaattcagaccagggttcgcaattctcaggacagtttctttcccctctgctcagt-gct-tatttcaagaca-------gtcaTGTCTTGAATACCTACAAGGGACAATTATTG--GGGGTTGATTTTCCTGTGAAAATTCACATGTGGAGCAGGCCTCCAGCTTTGAC-------------------TGCTGCCACATAAAACTCAGCAGGGTgttacctggctgggcagatgtctttggggtgaaagaaagcttgcctgttctgcttatttatcttgagttcccaacttcacttgc-------------ttttttttggcctgaggattctttacctttttgcaggttcaacaatgcatttaCTAAGACTT s panTro4.chr1 225119127 773 + 228333871 tgtttggttttctagttgcttaaggttggagggtaaatccagtttctattttt-------------caaacatggccagaagcagaaatttcgtcatttgtgatca-----tttttttt----------gtttatttctttaaacagtttaattgtctctgacatgttaatcaactttttgttgtttatttgtgatctaggtttgaacatctcattcttccatctgtggtttctgctggctctttctcatggtgccgtgtttc----tt--tgtttatttgtgtctgggggctactcattttcactggcattttatttgtgagaattctgcaagctctgggataaagatagtttactccagacagcatttgtgttaacttctaccagg-------------tgccagttgaggatagtctaaattacattctcagcttgaaatatttttggccacccagatatggagaactaagcctgcaaacctgcatgtaattcagaccagggttcacaattctcaggacagtttctttcccctctgctcagt-gct-tatttcaagaca-------gccaTGTCTTGAGTACCTAAAAGGGACAATTATTG--GGGGTTGATTTTCCTGTGAAAATTCACATGTGGAGCAGGCCTCCAGCTTTAAC-------------------TGCTGCCACATAAAACTCAGCAGGGTgttacctggctgggcagatgtctttggggtgaaagaaagcttgcctgttctgcttatttatcttgagttgccaacttcacttga-------------ttttttttggcctgaggattctttacctttttgcaggttcaacaatgcatttactaagactt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226490400 774 - 229942017 -gtttggttttctagttgcttaaggttggagggtaaatccaatttctattttt-------------caaacgtgaccagaagcagaaatttGGTCATTTGTGATCA---TTTTTTTTTT----------GTTTATTTCTTTAAACAGTTTAATTGTCTCTAGCATGTTAATCAAC-TTTTGTTGTTTATTTGTGATCTAGGTttgaacatctcatcctgccatctgtggtttctgctggctctttctcatggtgccgtgtttc----tt--tgtttatttgtgtctaggggctactcattttcgctggcattttatttgtgagaattctgcaagctctgggataaagagagtttactccagagagcatttgtgtttacttctaccagg-------------tgccagttgaggatagtctaaattacattctcagcttgaaatatttttgaccacccagatatggaggactaagcccgcagacctgcatgtaattcagaccagcattcgcaattctcaggacagtttctttccccTCTGCTCAGT-GCTATATTTCAAGACA-------GTCGTGTCTTGAATACTTAAAAGGGACAATTGTTG--GGGGTTGATTTTCCTGTGAAAATTCACATGTGGAGCAGGCCTCCAGCTTTGAC-------------------TGCTGCCACATAAAACTCAGCAGGGTGTTACCTGGTTGGGCAGATGTCTTTGGGGTGAAAGAAAGCTTGCCTGTTCTGCTTATTTATCTTGAGTTCCCAACTTCACTTGC-------------TTTtttttggcctgaggattctttacctttttgcaggttcaacaatgcatttGCTAAGACTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140378231 768 - 143122389 tgtttggttttctagttgcttaaggttggagggtaaatccagtttctattttt-------------caaacatggccagaagcagaaatttGGTCATTTGTGAtca-----tttt---------------tttatttctttgaacagtttaattgtctctaacgtgttaatcaactttttgttgtttatttgtgatctaggtttgaacatctcattcttccatctgtggtttctgctggccctttctcatggtgccgtgtttc----tt--tgtttatttgtgtctgggggctactcattttcactggcattttatttgtgagaattctgcaagctctgggataaagatagtttactccagagagcatttgtgtttacttctaccagg-------------tgccagctgaggatggtctaaattacattctcagcttgaaatatttttgaccacccagatatggaaaactcagcctgcaaacctgcgtgtaattcagaccagggtgcgcaattctcaggacggtttctttccccTCTGCTTAGT-GCTATATTTCAAGACA-------GTCATGTCTTGAATACCTAAAAGGGACAATTGTTG--GGGGTTGATTTTCCTGTGAAAAGTCACATGTGCAGCAGGCCTCCAGCTTTGAC-------------------TGCTGTCACATAAAACTCAGCAGGGTGTTACCTGGTTGGGCAGATGTCTTTGGGGTGAAAGAAAGCTTGCCTGTTCTGCTTATTTATCTTGAGTTCCCAACTTCACTTGC--------------TTTTTTTGGCCTGAAGATTCTTTACCTTTTTGCAGGTTCAACAATGCATTTACTAAGACTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17081303 772 - 229590362 tgtttggttttctagttgcttaaggttagagggtaaatccagtttctattttt-------------caaacatggccagaagcagaaatttGGTCATTCGTGAT-------tttttttt-----------tttatttctttaaacagtttaattgtctctaacatgttaatcaactttttgttgtttatttgtgatttaggtttgaacatctcattctgccatctgtggtttctgctggctctttctcatggtgccgtgtttctttgtt--tgtttatttgtgtctgggggttactcattttcactggcattttacttgtgagaattctgaaagctctgggataaagagagtttactccagatagcatttgtgtttacttctaccagg-------------tgccagttgaggatagtctaaattacatcctcagcttgaaatatttttgaccacccagatatggagaattaagcctgcaaacctgcgtgtaattcagaccagggttcccaattctcaggacagtttctttccccTCTGCTCAGTGGCTGTATTTCAAGACA-------GTCATGTCTCGAATACCTAAAATGGACCGTTGTTG--GGGGTTGATTCTCCTGTGAAAATTCACATGTGGGGCAGGCCTCTGGCTT-----------------------TGCTGCCACGTAAAACTCAGCAGGGTGTTACCTGGTTGGGCAGATGTC-TTGGGGTGAAAGAAGGCTTGCCTGTTCTGCTTATTTATCTTGAGTTCCCAGCTTCACTTGC------------TTTTTTTTTGGCCTGAGAATTCTTGACCTTTTTGCAGGTTCAACAATGCATTTACTAAGACTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223845768 772 - 227556264 tgtttggttttctagttgcttaaggttagagggtaaatccagtttctattttt-------------caaacatggccagaagcagaaatttggTCATTCGTGAT-------TTtttttt-----------tttatttctttaaacagtttaattgtctctaacatgttaatcaactttttgttgtttatttgtgatttaggtttgaacatctcattctgccatctgtggtttctgctggctttttctcatggtgccgtgtttctttgtt--tgtttatttgtgtctgggggttactcattttcactggcattttacttgtgagaattctgaaagctctgggataaagagagtttactccagatagcatttgtgtttacttctaccagg-------------tgccagttgaggatagtctaaattacatcctcagcttgaaatatttttgaccacccagatatggagaattaagcctgcaaacctgcgtgtaattcagaccagggttcccaattctcaggacagtttctttcccctcTGCTCAGTGGCTGTATTTCAAGACA-------GTCATGTCTTGAATACCTAAAATGGACCGTTGTTG--GGGGTTGATTCTCCTGTGAAAATTCACATGTGGGGCAGGCCTCTGGCTT-----------------------TGCTGCCACGTAAAACTCAGCAGGGTGTTACCTGGTTGGGCAGATGTC-TTGGGGTGAAAGAAAGCTTGCCTGTTCTGCTTATTTATCTTGAGTTCCCAGCTTCACTTGC------------TTTTTTTTTGGCCTGAGAATTCTTGACCTTTTTGCAGGTTCAACAATGCATTTACTAAGACTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16895957 767 - 220367699 tgtttggttttctaGTTGCTGAAGGTTAGAGGGTAAATCCAGTTTCTATTTTT-------------CAAACATGGCCAGAAGCAGAAATTTGGTCattcgtga--------tttttttt-----------tttatttctttaaacagttTAATTGTCTCTAACATGTTaatcaactttttgttg----tttgtgaTTTAGATTTGAACATCTCATTCTGCCATCTGTGGTTTCTGCTGGCTCTTTCTCATGGTGCcgtgtttctttgtt--tgtttatttgtgtctGGGGGCTACTCATTTTCACTGGTATTTTACTTTTGAGAATTCTGAAAGCTCTGGGATAAAGACAGTTTACTCCAGAGAGCATTTGTGTTTACTTCTACCAGG-------------TGCCAGTTGAGGATAGTCTAAATTACATCCTCAGCTTGAAATATTTTTGACCACCCAGATATGGAGAATTAAGCCTGCAAACCTGCGTGTAATTCAGACCAGGGTTCCCAATTCTCAGGACAGTTTCTTTCCCCTCTGCTCAGTGGCTGTATTTCAAGACA-------GTCGTGTCTTGAATACCTAAAATGGACTGTTGTTG--GGGGTTGATTCTCCTGTGAAAATTCACATGTGGGGCAGGCCTCTGGCTT-----------------------TGCTGCCACGTAAAACTCAGCAGGGTGTTACCTGGTTGGGCAGATGTC-TTGGGGTGAAAGAAAGCTTGCCTGTTCCGCTTATTTATCTTGAGTTCCCAGcttcacttgc------------tttttttttggccTGAGAATTCTTGACCTTTTTGCAGGTTCAACAATGCATTTACtaagactt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82695835 777 + 85787240 tgtttggttttctagttgcttaaggttggagggtaaatccagtttctattttt-------------caaacatggccagaagcagaaatttggtcattcgtgat-------ctttttttgttt------gtttatttctttaagcagtttaatggtctcttacatgttaatcaactttttgttgtttatttgtgatttaggtttgaacatctcattctgccatctgtggtctctgctggctctttctcatggtgccgtgtttctttgtt--tgtttgtttgtgtctgggggctactcattttcactggcattttacttgtgagaattctgaaagctctgggataaagacagtttactccagagagcatttgtgtttacttctaccagg-------------tgccagttgaggatagtctaaattacatcctcagcttgaaatatttttgaccacccagatatggagaattaagcctgcaaacctgcgtgtaattcagaccagggttcccaattctcaggacagtttctttccccTCTGCTCAGTGGCTATATTTCAAAACA-------GTCGTGTCTTGAATACCTAAAATGAACCGTTGTTG--GGGGTTGATTCTCCTGTGAGAATTCACATGTGGGGCAGGCCTCTGGCTT-----------------------TGCTGCCACATAAAACTCAGCAGGGTGTTACCTGGTTGGGCAGATGTC-TTGGGGTGAAAGAAAGCTTGCCTGTTCCGCTTATTTATCTTGAGTTCCCAGCTTCACTTGC------------TTTTTTGTTGGCCTGAGAATTCTTGACCTTTTCGCAGGTTCAACAATGCATTTACTAAGACTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14415276 769 - 49578535 tgtttggttttctaattgcttgagattggagggtaaatccagtttctattttt-------------caaacatgaccagaagcagaaatttggtcatatgtgat-------ttttttttttttggtgtattttatttctttaaacagtttaattgtctctaacatgttaatcaaccttttgttgtttatttgtgatctaggtttgaacatatcatcttgccgtctgtggtttctgctggctgtttctcatggtgccgtgtttc----ttggggtttatttgtgtctgggggctactcatttccactggcattttatttgtgagaattctgccagccctgtgataaagagagtctactctagagagcatttgtgtgtgctgctcccagg-------------tgcccgttgagggtagtctaaatcatattctcagcttgaaacg-ttttgaccacccagatatgaagaattaagcctgtaagcctgcatgtaattcagaccagggctcccaattcttaggacagtttctt-------------gt-gctATATTTCAAGACAGTCGTGTGTCGTGTCTCGAATACCTAAGG------------G--GGTGTTGATTTTCCTGTGAAAATTCGCATGTGGGGCAGGCCTCCACCTT-----------------------TGCTGCCACAGAAAACTCAGCAGGGTGTTACCTGGTTGGGCAAGTGTCTTCGGGTTGAAA----GCTTGCCCGTTCCGCTTATTTACCTTGAGTTCCCAGTGTCACTTTGTTGTTGTTGATTTTATTTTTTGGCCTGAAAATTCTTTA-CTTTTTGCAGGTTTAACAATGCATTTCCTAAAACTT i calJac3.chr19 I 257 C 0 s canFam3.chr7 36486922 814 + 80974532 tgtttggttttctagttgtttaaggctgtagggtaaatctagttccttttttttttttttttcttctcagcatggccagaagcagaaa-ttggtcatctctgatgaatttcttgtttat-----------tttatttctttaaacatcttaatttccttaagcatgttaatcaactttttgttgtttatttgtaatctatgtttgaacatctcattcggccatctgttgtttctgctgggtctttctcatggtgccgtgtttctttgtg--tgtatactcttaccctggggctactcatttgcattcacattttatttgtgagaaatctctgagatggaggataaagatggtttacttt----agcatttgtgtttacttctgcttggtaactgggatcactaccaattaaggatgtcctgcattacattctccggttgaaaaattttagaccacccggatattgagaattaaaactgcaaacttgcat-caaaccagcctgtggcttcatattctcaggacaatttct----cttctaatcagt-gccatatttcgagaca-------gacGTGAGTTACATGGTCA--GGGGGCAGGTGGTATCGAAGGGGATTTTCCTATTAAAATCCTAACTTTGGGCAGGCTCTTGGCTGTGTCTTCTGTTTTCCATGCCCTTTGAAGCCATATAAAGCTAAGCTGAATATTACCTGGTTTGGCAAATGCCTTCAGGGTAAAAGCAAACTTCCATGTTCTGTTTGGTTCTAGTGAGTTCCCAACTTCGTTTAT--------------CTCTTTGGGCCTGACAATACCTCAC--TCCTACAAGCTCAGGAAACCATTCAATAAGATTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I a score=359538.000000 s hg38.chr1_KI270759v1_alt 362134 133 + 425601 AAAAATAATATCCACggccgggcatggtggctcacgcctgtaatcccagcattttaggaggccgaggcaggcagatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccctgtctcga s panTro4.chr1 225119900 133 + 228333871 aaaaataatatccacggccaggcatggtggctcatgcctgtaatcccagcattttaggaggccgaggcaggcagatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccctgtctcga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226491174 133 - 229942017 AAAAATAATATCCACTgctgggtggggtggctcacgcctgtaatcccagcattttaggaggccgaggcagtcagatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaatcctgtcttga i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140378999 131 - 143122389 AAAAATA--ATCCATggccaggcgtggtggctcacgcctgtaatcccagcactttaggaggccgaggcaggcagatcacctgaggtcaggagttcgagaccagcctgaccaacatggagaaaccctgtctcga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17082075 133 - 229590362 AAAAATAATATCCACggccggacgcggtggctcacacctgtcatcccagcactttaggaggctgaggcaggcagaacacctgagatcaggagtttgagaccagactgaccaacatggtgaaaccccaacccta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223846540 133 - 227556264 AAAAATAATATCCACggccggacgcggtggctcatacctgtcatcccagcactttaggaggctgaggcaggcagaacacctgagatcaggagtttgagaccagactgaccaacatggtgaaaccccaacccta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16896724 133 - 220367699 aaaaataatatccacggccgggcgcggtggctcacaccagcaatcccagcactttaggaggctgaggcaggcagaacacctgagatcaggagtttgagaccagactgaccaacatggtgaaaccccaacccta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82696612 133 + 85787240 AAAAATAATATCCACggccgggcgcggtggctcacacctgtaatcccagcactttaggaggctgaggcaggcagaacacctgagatccggagtttgagaccagactgaccaacatggtgaaaccccaacccta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14416045 130 - 49578535 AAAA--AATATCCACggctgggggcggtagctcacacctgtaatctcaggactttgggaggctgaggcggg-ggatcacctgaggtcaggagttccagacaagcctgaccaacgtggtgaaaacccgtctcta i calJac3.chr19 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36487736 0 + 80974532 C a score=32760.000000 s hg38.chr1_KI270759v1_alt 362267 10 + 425601 gtaaaaatac s panTro4.chr1 225120033 10 + 228333871 gtaaaaatac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226491307 10 - 229942017 gtaaaaatac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140379130 10 - 143122389 gtaaaaacac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17082208 10 - 229590362 ctaaaaatac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223846673 10 - 227556264 ctaaaaatac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16896857 10 - 220367699 ctaaaaatac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82696745 10 + 85787240 ctaaaaatac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14416175 10 - 49578535 ctaaaaatac i calJac3.chr19 C 0 C 0 s canFam3.chr7 36487736 10 + 80974532 GTGAAAATAT i canFam3.chr7 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I a score=315531.000000 s hg38.chr1_KI270759v1_alt 362277 110 + 425601 -aaaattagccgggcatggtggcgggcgcctgtaatcccagc---------agctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccgagatcacgccattgca s panTro4.chr1 225120043 110 + 228333871 -aaaattagccgggcatggtggcaggcacctgtaatcccagc---------aactgaggcaggagaatcgcttgaacacgggaggtggaggttgcagtgagctgagatcacgccattgca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226491317 110 - 229942017 -aaaattagccaggcatggtggcaggcgcctgtaatcccagc---------aactgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcacgccattgca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140379140 110 - 143122389 -aaaattagccgggcatggtggcgggcacctgtaatcccagc---------aactgaggcaggagaatcacttgaacccgagaggtggaggttgcagtgagccaagatcacgccattgca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17082218 111 - 229590362 aaaaattagctgggcgtggtggcgcattcctgtaatcccagc---------aactgaagcaggagaatcacttgaacccgggaggtggaggttacagtgagccgagatcaagccactgca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223846683 111 - 227556264 aaaaattagctgggcgtggtggcgcattcctgtaatcccagc---------aactgaagcaggagaatcacttgaacccgggaggtggaggttacagtgagccgagatcaagccactgca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16896867 111 - 220367699 aaaaattagctgggcatggtggcgcatgcctgtaatcccagc---------aactgaagcaggtgaatcacttgaacccgagaggtggaggttacggtgagccgagatcgtgccactgca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82696755 111 + 85787240 aaaaattagctgggcgtggtggcgcattcctgtaatcccagc---------aactgaagcaggagaatcacttgaacccgggaggtggaggttacagtgagccgagatcgcgccattgca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14416185 120 - 49578535 aaaaattagccaggtgtgctggtgcctgcctgtaatcccagctactcaggaggctgaggcaggagaattacttgaacccgggaggcggaggttgcagtgagccgagatcgccccactgca i calJac3.chr19 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36487746 0 + 80974532 C a score=112132.000000 s hg38.chr1_KI270759v1_alt 362387 48 + 425601 ctccagccttggcaacaagagtgaaactccatctc---------aaaaaaaaaaaaa s panTro4.chr1 225120153 48 + 228333871 ctccagctttggcaacaagagtgaaactccatttc---------aaaaaaaaaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226491427 48 - 229942017 ctccagccttggcaacaagagtgaaactccatctc---------aaaaaaaaaaaaa i ponAbe2.chr1 C 0 M 315 s nomLeu3.chr5 140379250 48 - 143122389 ctccagccttggcaacaagagtgaaactccatctc---------aaaaaaaaaaaaa i nomLeu3.chr5 C 0 I 7 s rheMac3.chr1 17082329 48 - 229590362 ctccagcctgggtgacaagagtgaaactccatctc---------aaaaaaaaaaaaa i rheMac3.chr1 C 0 I 6 s macFas5.chr1 223846794 50 - 227556264 ctccagcctgggtgacaagagtgaaactccatctc-------aaaaaaaaaaaaaaa i macFas5.chr1 C 0 I 6 s papAnu2.chr1 16896978 56 - 220367699 ctccagcctgggtgacaagagtgaaactccatctc-aaaaaaaaaaaaagaaaaaag i papAnu2.chr1 C 0 I 6 s chlSab2.chr25 82696866 57 + 85787240 ctccagcctgggcgacgagagtgaaactccatctcaaaaaaaaaaaaaaaaaaaaaa i chlSab2.chr25 C 0 I 6 s calJac3.chr19 14416305 47 - 49578535 ctccagcctgggtgac-agagcaagaccccatctc---------aaaaaaaaaaaac i calJac3.chr19 C 0 I 5 s canFam3.chr7 36487746 5 + 80974532 CTTCA---------------------------------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I a score=76699.000000 s hg38.chr1_KI270759v1_alt 362435 34 + 425601 aa--TCCACAACATTTAACTGTACTTGGTAAGAAGG s panTro4.chr1 225120201 36 + 228333871 aaaatccacaacatttaactgtacttggtaagaagg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140379305 34 - 143122389 --aaTCCACAACATTTAACTGTACTTGATAAGAAGG i nomLeu3.chr5 I 7 C 0 s rheMac3.chr1 17082383 33 - 229590362 --aGGCCACAACTTTTAA-CGTACTTGGTAAGAAGG i rheMac3.chr1 I 6 C 0 s macFas5.chr1 223846850 33 - 227556264 --aGGCCACAACATTTAA-CGTACTTGGTAAGAAGG i macFas5.chr1 I 6 C 0 s papAnu2.chr1 16897040 34 - 220367699 --aggccacaACATTTAATCGTACTTGGTAAGAAGG i papAnu2.chr1 I 6 C 0 s chlSab2.chr25 82696929 34 + 85787240 --aGGCCACAACATTTAATTGTACTTGGTAAGAAGG i chlSab2.chr25 I 6 C 0 s calJac3.chr19 14416357 34 - 49578535 --aaCCCACAACGTTTATTTGTACTTAGTAAGCAGG i calJac3.chr19 I 5 C 0 s canFam3.chr7 36487751 31 + 80974532 -----CCACAGTGTTTAATTGTACTTGATAAGAAGG i canFam3.chr7 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I e ponAbe2.chr1 226491475 315 - 229942017 M a score=1169004.000000 s hg38.chr1_KI270759v1_alt 362469 407 + 425601 TTTTCCTAGGAA--CCCAGCCTATCATATTGCTCCTTTG---CTTTTATTTTT-----TTCCTGTTACACACCTCTCCTTCTTTTAAA---TAAGtaaggagatcatataacttatt---------atcgaagccacttttgagagtgaaaagggacacttaattattattatttcatgtttcgaaatattttctgacacagccgtctatattggtgaacctataaaacagttctattcaaaaattactttcaaacatgaaatgctttcttaataaaaga---aaa----tacat----caaagtag-aaaaaggttaaaactgctttatat--tgtttatctggacattaaaaaataagcagaataatcac--ttaatatacttttgtgtattttaatcattgtcttcactatcttct---aataccacttcagtagtatttttctt s panTro4.chr1 225120237 410 + 228333871 ttttcctaggaa--cccagcctatcatattgcTCCTTTG---CTTTT----TT-----TTCCTGTTACACACCTCTCCTTCTTTTAAA---TAAGtaaggagatcatataacttatt---------atcgaagccgcttttgagagtgaaaagggacacttaattattattatttcatgtttcgaaatattttctgacacagccgtctatattggtgaacctataaaacagttctattcaaaaattactttcaaacatgaaatgctttcttaataaaaga---aaa----tacatacatcaaagtag-aaaaaggttaaaactgctttatat--tgttcatctggacattaaaaaataagcagaataatcac--ttaatatacttttgtgtattttaatcattgtcttcactatcttcttctaataccacttcagtagtatttttctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226491790 404 - 229942017 TTTTCCTAGGAAACCCCTGCCTATCATATTGATCCTTTG---CCTTT-TTTTT-----TTCCTGTTACACCCCTCTC---CTTTTAAA---TAAGtaaggagatcatataatttatt---------atcaaagccgcttttgagagtgaaaagggacactta---attattatttaatgttttgaaatattgtctgacacatccatctatattggtgaacctataaaatacttctattcaaaaattactttcaaacataaaatgctttcttaataaaatacctaca----tacat----caaagtag-aaaaaggttcaaactgctttatat--tgtttatctggacattaaaaaataagcagaataatc------aatatacttttgtgtattttaatcattgtcttcactatcttcttctaataccacttcagtagtatttttctt i ponAbe2.chr1 M 315 C 0 s nomLeu3.chr5 140379339 402 - 143122389 TTTTCCTAGGAA--CCCAGCCTTTAATATTGCTCCTTTG---CTTTT-----C-----TTTCTGTTACACACCTCTC---CTTTTAAA---TAAGtaaggagatcatataatttatt---------atcgaagccacttttgagagtgaaaagggacacttaattattattatttaatgttttgaagtattttctgacacatccatctatactggtgaacctataaaatagttctattcaaaaattactttcaaacataaaatgctttcttaagaaaatacctaca----tacat----caaagtag-aaaaaggttaaaactgctttatat--tgtttatctggacattaaaaaataagcagaataatcac--ttaatatacttttgtgtattttaatcattgtcttcactatcttct---aataccacttcagtagtagttttctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17082416 409 - 229590362 TTTTCCTAGGAA--CCGAGCATATCATATTGCTCCTTTC---CTTTT-TTCCC-----CCTCTGTTACACACCTCTCCTCCTTTTAAA-------taaggagatcatatagtttatt---------atccaagccacttttgagagtgaaaagggacacttaattattattatttagtgttttgaaatattttctgacacattcatctatattggtgaacctataaaatagttctattcaaaaattactttcaaacataaaatgctttcttataaaaaga---aaa----tacaggcatcaaagtag-aaaaaggttaaaagtgctttatat--tgtttatctggacattaaaaaagaagcagaataatcac--ttaatatacttttgtatattttaatcattgtcttcactatcttattataataccacttcagtagcatttttctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223846883 409 - 227556264 TTTTCCTAGGAA--CCGAGCGTATCATATTGCTCCTTTC---CTTTT-TTCCC-----CCTCTGTTACACACCTCTCCTCCTTTTAAA-------TAaggagatcatatagtttatt---------atccaagccacttttgagagtgaaaagggacacttaattattattatttagtgttttgaaatattttctgacacattcatctatattggtgaacctataaaatagttctattcaaaaattactttcaaacataaaatgctttcttataaaaaga---aaa----tacaggcatcaaagtag-aaaaaggttaaaagtgctttatat--tgtttatctggacattaaaaaagaagcagaataatcac--ttaatatacttttgtatattttaatcattgtcttcactatcttattataataccacttcagtagcatttttctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16897074 413 - 220367699 TTTTCCTAGGAA--CCGAGCGTATCATAttgctcctttc---ctttt-tcccc-----ccccTGTTACACACCTCTCCTCCTTTTAAA-------TAAGGAGATCATATAGTTTATT---------ATCCAAGCcacttttgagagtgaaaagggacacttaattattattatttagtgttttgaaatattttctgacaCATTCATCTATATTGGTGAACCTATAAAATAGTTCTATTCAAAAATTACTTTCAAACATAAAATActttcttataaaaaga---aaatacctacaGGCATCAAAGTAG-AAAAAGGTTAAAAGTGCTTTATAT--TGTTTATCTGGACattaaaaaagaagcagaataATCAC--TTAAtatacttttgtatattttaatcatTGTCTTCACTATCTTATTATAATACCACTTCAGTAGCATTTTTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82696963 413 + 85787240 TTTTCCTAGGAA--CCAAGCCTATCATATTGCTCCTTTC---CTTTT-TTCCC-----CCTCTGTCACACACCTCTCCTCCTTTTAAA---TAAGtaaggagatcatatagtttatt---------atccaagccacttttgagagtgaaaagggacacttaattattattctttagtgttttgaaatattttctgaca----catctatattggtgaacctataaaatagttccattcaaaaattactttcaaacataaaatactttcttataaaaaga---aaatacctacatgcatcaaagtag-aaaaaggttaaaactgctttatat--tgtttatctggacataaaaaaagaagcagaaggatcac--ttaatatacttttgtatattttaatcattgtcttcactattttcttctaataccacttcagtagtatttttctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14416391 420 - 49578535 CTTTCCTAGGAA--CCAAGCCTACCATGTTGCTCCTTTG---CTGCT-TTTTCTGTTGCCGTCGTTACACAGCTCTCCTTCTTTTAAATGATAAGtaagggcatcatataatttatt---------atccaagtcacttttgagagtgaaaacggacact---gtattattattcagtgttttgaaatactttctgacacatccttctatattggcgaacctataaaatagttctattcaaactttgctttcaaaca--aaatactgtcttataaaaaga---aaatatctacatatatcaaagtagaaaaaaagttaaagcttctttatgt--tgtttatctgggcattaaaagataagcagaataatcac--ttaatgtac-tttgtgtgtgttaatcagtatcttcactgtctttttctaatactatgtcagtggtagttttctt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36487782 408 + 80974532 ----------TA--CCTGGACTACCATTTTGCTTTTTTGGATATTTT-TCTAT-----ACTCTGTTATACATTTCTCTGTGTTCTAAATGATAAGtaagggaaccctataattaattcatggtccaaactaggacatttttcaaagtaatagag-----ttagttaatattatt-aatttgctgaaatattttctgacaaacccattagtattagtggattcataaaatagttgtaatcaaaa-ttaccttaaaaaataaaatattttcttgccaaaaaa---at-----catgtacaccaaag----aaaaaatttaaaatatctttatatagtgtctctcagaacattcaa--gtaagcaggatacttattatcaatccacttttgtgtattttaatcattttccccaa-atctatgcttactatgatgtcaatggtgtctttttt i canFam3.chr7 C 0 I 122 e mm10.chr1 178894833 4250 + 195471971 I a score=463290.000000 s hg38.chr1_KI270759v1_alt 362876 156 + 425601 aacactattttttctatTGT-----TAATGTCAGGGCG--TTTTTCTCCTTCACATAATCCAACTGCCTTACCTATATATTTACATATATGTTTATGTGCATTAacacatcaaaccatctgtttttgataactgtggcttctgtttctcttgatagaatatca s panTro4.chr1 225120647 156 + 228333871 aacactattttttctatTGT-----TAATGTCAGGGCG--TTTTTCTCCTTCACATAATCCAACTGCCTTACCTATATATTTACATATATGTTTATGTGCATTAacacatcaaaccatctgtttttgataactgtggcttctgtttctcttgatagaatatca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226492194 156 - 229942017 aacactattttttctattgt-----taatgtcagggcatttttttcTCCTTCACATAATCCAACTGCCTTACCTATATGTTTACACATATGTTTATGTGCATTAACACATCAAACCATCTGTttttggtaactgtggcttctgtttctcttgatagaatat-- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140379741 156 - 143122389 aacactattttttctatTGT-----TAATGTCAGGGCA--TTTTTCTCCTTCACATAATCCAACTGCCTTACCTATATGTTTACATATATGTTTATGTGCATTAacacatgaaaccatctgtttttgataactgtggcttctgtttctcttgatagaatatca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17082825 156 - 229590362 aacactgttttttctgttgt-----taatgtcatggcc--tttttgttcttcacataatccaactgccttacctctatgtttacatatatgtttatgtgcattaacacatcaaaccatttgtttttgataactgtggcttctgtttctcttgatagaatatca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223847292 156 - 227556264 aacactgttttttctgttgt-----taatgtcatggcc--tttttattcttcaCATAATCCAACTGCCTTACCTCTATGTTTACATATATGTTTATGTGCATTAACacatcaaaccatttgtttttgataactgtggcttctgtttctcttgatagaatatca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16897487 156 - 220367699 AACACTGTTTTTTCTATTGT-----TAATGTCATGGCC--TTTTTGTTCTTCACATAATCCAACTGCCTTACCtctatgtttacatatatgtttatgtgcATTAACACATCAAACCATCTGTTTTTGATAACTGTGGCTTCTGTTTCTCTTGATAGAATGTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82697376 156 + 85787240 aacactgttttttctATTGT-----TAATGTCATGGCG--TTTTTCTTCTTCACATAATCCAACTGCCTTACTTCTATGTTTACATATATGTTTATGTGCATTAacacatcaaaccatctgtttttgataactgtggcttctgtttctcttgatagaatatca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14416811 161 - 49578535 aatgtgattttttctgttgttttcctaatgtcatggca--tttttcttcttcacataatccacctgccttacctatatgtttacataaatgtgtatgtgtattgacgcataaaaccatctgtttttgatagctgtggcttctgtttcttttgatagaatatca i calJac3.chr19 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36488190 122 + 80974532 I a score=143076.000000 s hg38.chr1_KI270759v1_alt 363032 47 + 425601 cagtttggttaaaaataagtgtgaatttattcatacaaccaccaatt s panTro4.chr1 225120803 47 + 228333871 cagtttggttaaaaataagtgtgaatttattcgtaccaccaccgatt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226492350 47 - 229942017 cagtttggttaaaaataattgtgaatttattcgtaccaccaccaatt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140379897 47 - 143122389 cagtttgtttaaaaataattgtgaatttatttgtaccaccaccaatt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17082981 47 - 229590362 cagtttggttaaaaataattgtgaatttatttgtaccaccaccaatt i rheMac3.chr1 C 0 I 323 s macFas5.chr1 223847448 47 - 227556264 cagtttggttaaaaataattgtgaatttatttgtaccaccaccaatt i macFas5.chr1 C 0 I 324 s papAnu2.chr1 16897643 47 - 220367699 CAGTTTGgttaaaaataattgtgaattTATTTGTACCACCACCAATT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82697532 47 + 85787240 cagtttggttaaaaataattgtgaatttatttgtaccaccaccaatt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14416972 47 - 49578535 cagtttggtgaaaaataattgagaatttatttgtaccactatcagtt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36488312 34 + 80974532 Cattttatttaaa--------tgaatttatttttaaaaattc----- i canFam3.chr7 I 122 C 0 e mm10.chr1 178894833 4250 + 195471971 I a score=317151.000000 s hg38.chr1_KI270759v1_alt 363079 111 + 425601 acaagtttatttcagtgaaatacatttctcaattcagtgagaatattgtGTGTTAAAGTTtcaaaggatcttcccacaagtcaat--ttccagagcatacttgtagaatttca s panTro4.chr1 225120850 111 + 228333871 acaagtttatttcagtgaaatacatttctcgattcagtgagaatattgtGTGTTAAAGTTtcaaaggatcttcccacaagtcaat--ttccagagcagagttgtagaatttca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226492397 111 - 229942017 acaagtttatttcagtgaaatacatttctcaattcagtgagaatattgtGTGTTAAAGTatcaaaggatcttcccacaagtcaat--ttccagagcgtagttgtagaatttca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140379944 111 - 143122389 acaagtttatttcaatgaaatacgtttcccaattcagtgagaatattgtGTGTTGAAGTTtcaaaggatcttcccacaagtcaat--ttccagagcatagttgaggaatttca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17083351 109 - 229590362 acaagtttatttcaatgaaatatgtttctcaattcagtgagaatattgtgtgtt--agtttcaaaggctcttcccacaagtcagt--ttcccgagcatagttgtagaatttca i rheMac3.chr1 I 323 C 0 s macFas5.chr1 223847819 109 - 227556264 acaagtttatttcaatgaaatatgtttctcaattcagtgagaatattgtgtGTT--AGTTTCAAaggctcttcccacaagtcagt--ttcccgagcatagttgtagaatttca i macFas5.chr1 I 324 C 0 s papAnu2.chr1 16897690 109 - 220367699 ACAAGTTTATTTCAATGAAATATGTTTCTCAATTCAGTGAGAATATTGTGTGTT--AGTTTCAAAGGCTCTTCCCACAAGTCAGT--TTCCCAAGCATAGTTGTAGAATTTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82697579 109 + 85787240 acaagtttatttcaatgaaatacgtttctcagttcagtgagaatattgtGTGTT--AGTTtcaaaggatcttcccaaaagtcagt--ttcctgagcatagttgtagaatttca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14417019 108 - 49578535 acaagtttatttcagtggaatatgtttctcaattcagtgagaatattgtgtgtg--agtttcaaaggaccttcccgc-agtcaat--ttccagagcacagttacagaatttca i calJac3.chr19 C 0 C 0 s canFam3.chr7 36488346 85 + 80974532 -----tttatttacat------------tcaatttgattaacatatagtgtattt-agttttagaag-------tagagctcagtaattc---atcagtcttatataatcaca i canFam3.chr7 C 0 I 110 e mm10.chr1 178894833 4250 + 195471971 I a score=279230.000000 s hg38.chr1_KI270759v1_alt 363190 102 + 425601 cattttaatcttctatacagtttgagctcttgtcatctatatttcagggtcccctgtttgcaaattttgtttttaatcattgcaattcattacaggcttcag s panTro4.chr1 225120961 102 + 228333871 cattttaatcttctatacagtttgagctcttgtaatctatatttcagggtcccctgtttgcaaattttgtttttaatcattgcaattcattacaggcttcag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226492508 102 - 229942017 cattttaatcttctatacagtttgagctcttgtcatctatatttcagggtcccctgtttgcaaatcttgtttttaatcattgcaattcattacaggcttcag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140380055 101 - 143122389 ca-tttaatcttctgtacagtttgagctcttgtcatctatatttcagggtcccctgtgcgcaaattttgtttttaatcattgcaattcattacaggcttccg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17083460 100 - 229590362 catgttaatcttctatgcagtttgagcccttatcatctctatttcaggg--ccccgtttgcaagttttgtttttaatcattgcaattcattacaggcttcag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223847928 100 - 227556264 catgttaatcttctatacagtttgagcccttatcatctctATTTCAGGG--CCCcgtttgcaagttttgtttttaatcattgcaattcattacaggcttcag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16897799 100 - 220367699 CATGTTAATCTTCTATACAGTTTGAGCCCTTATCATCTCTATTTCAGGG--CCCCGTTtgcaagttttgtttttaatcattgcAATTCATTACAGGCTTCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82697688 100 + 85787240 cattttaatcttctatacagtttgagcccttatcatctCTATTTCAGGG--Ccccgtttgcaagttttgtttttaatcattgcaattcattacaggcttcag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14417127 102 - 49578535 cattttaatcttttatgcagtttcagctttggtcatctatttttcagggtccttcacttgcacactttgtttttaataactgcaattcattactagctttag i calJac3.chr19 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36488431 110 + 80974532 I a score=1525827.000000 s hg38.chr1_KI270759v1_alt 363292 449 + 425601 aggctgagc-tttttgtgtttcattggttgaacacttgattatgga-ttacaacttattttgaaccacaagccatcaaaatttagatgacttgtttccaaaactggagtactttttttgtagagcatttggattgactcatgaagtatgttttaaagtt-aaaagctgcctaatgtcagcaatttcctatcatttca-----ttatttcaagtgtcaaa--tatttctcaaatccaact--tgacaggcagcaaagagagaaccgcacactctactgatgaaat-gtttttaatccaatttaaacttcat-aaaaaatttttgtagttcagttac----tctcagtttatgtaaattttacacatttcaaaaactatagcttgtgcttctctgggtagaattagaactgtgtttgagctcagttatgaattacataggtac----atcaattacaggtacatttcagcata s panTro4.chr1 225121063 451 + 228333871 aggctgagc-tttttgtgtttcattggttgaacacttgattatgga-ttacaacttattttgaaccacatgccatcaaaatttagatgacttgtttccaaaactcgagtactttttttgtagagcatttggattgactcatgaagtacgttttaaagtt-aaaagctgcctaatgtcagcaatttcctatcatttca-----ttatttcaagtgtcaaa--tatttctcaaatccaactgttgacaggcagcaaagagagaacctcacactctactgatgaaat-gtttttaatccaatttaaacttcat-aaaaaatttttgtagttcagttac----tctcagtttatgtaaattttacacatttcaacaactatagcttgtgcttctctgggtagaattagaactgtgtttgagctcagttatgaattacataggtac----atcaattacaggtacatttcagcata i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226492610 452 - 229942017 aggctgagcttttttgtgtttcattggttgaacacttgattatgga-ttacaacttattttgaactacatgccatcaaaatttagatgacttgtttccaaaactcgagtactttttttgtagagcatttggattgactcatgaagtatgttttaaagtt-aaaagctgcctaatgtcagcaatttcctatcatttca-----ttatttcaagtgtcaaa--tatttcccaaatccaaatgttgacaggcagcaaagagagaactgcacactctcctgatgaaat-gtttttaatccaatttaaacttcat-aaaaaaattttgtagttcagttac----tctcagtttatgtaaattttacaaatttcaacaactatagcttgtgcttctctgggtagaattagaactgtgtttgagctcagttatgaattacatatgtac----atcaattacaggtacatttcagcata i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140380156 451 - 143122389 aggctgagc-tttttgtgtttcactggttgaacacctgcttatgga-ttacaacttattttgaaccacatgccatcaaaatttagatgacctgtttccaaaactcgagtactttttttgtagagcatttggattgactcatgaagtatgttttaaagtt-aaaagctgcctaatgtcagcaatttcctatcatttca-----ttatttcaagtgtcaaa--tatttctcaaatccaactgttgacaggcagcaaagagagaactgcacactctcctgatgaaat-gtttttaatccaatttaaacttcat-aaaaaatttttgtagttcagttac----tctcagtttatgtaaattttacaaatttcaacaactatagcttgtgcttctctgggtagaattagaactgtgtttgagctcagttatgaattacatacgtat----atcaattacaggtacatttcagcata i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17083560 451 - 229590362 aggctgagc-tttttgtgtttcattggttgaacacttgattatgga-ttacaacttattttgaaccacatgccatcaaaatgtagatgacttgtttccaaaacttgaatactttttttgtagagcatttggattgactcatgaagtatgtttgaaagtt-aaaagttgcctaatgtcagcaatttcctatcatttca-----ttatttcaagtgtcaaa--tatttctcaaatccagctgttgacaggcagcacagagagaactgcacactctcctgatgaaat-gtttttaatccaatttaaacttcat-aaaaaatttctgtggttcagttac----actcagtttatgtaaattttacaaatttcaacaactacagcttgtgcttctctgggtagaattagaactgtgtttaagctcagttatgaattacatatgtat----atcaattacaggtgcatgtcagcatc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223848028 451 - 227556264 aggctgagc-tttttgtgtttcattggttgaacacttgattatgga-ttacaacttattttgaaccacatgccatcaaaatgtagatgacttgtttccaaaacttgaatactttttttgtagagcatttggattgactcatgaagtatgtttgaaagtt-aaaagtTGCCTAATGTCAGCAATTTCCTATCATTTCA-----TTATTTcaagtgtcaaa--tatttctcaaatccagctgttgacaggcagcacagagagaactgcacactctcctgatgaaat-gtttttaatccaatttaaacttcat-aaaaaatttctgtggttcagttac----actcagtttatgtaaattttacaaatttcaacaactacagcttgtgcttctctgggtagaattagaactgtgtttaagctcagttatgaattacatatgtat----atcaattacaggtgcatgtcagcatc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16897899 451 - 220367699 AGGCTGAGC-TTTTTGTGTTTCATTGGTTGAACACTTGATTATGGA-TTACAACTTATTTTGAACCACATGCCATCAAAATGTAGATGACTTGTTTCCAAAACTCgaatactttttttgtagagcaTTTAGATTGACTCATGGAGTATGTTTGAAAGTT-AAAAGTTGCCTAATGTCAGCAATTTCCtatcatttca-----ttatttcaagtgtcaaa--tatttctcaaatccaGCTGTTGACAGGCAGCACAGAGAGAACTGCACACTCTCCTGATGAAAT-GTTTTTAATCCAATTTAAACTTCAT-AAAAAATGTTTGTGGTTCAGTTAC----ACTCagtttatgtaaattttacaaaTTTCAACAACTACAGCTTGTGCTTCTCTGGGTAGAATTAGAACTGTGTTTAAGCTCAGTTATgaattacatatgcat----atcaattacaggtgcatgtcagcATC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82697788 451 + 85787240 aggctgagc-tttttgtgtttcattggttgaacacttgattatgga-ttacaacttatcttgaaccacatgccatcaaaatgtagatgacttgtttccaaaactcaaatactttttttgtagagcgtttggattgactcatgaagtatgttttaaagTT-AAAAGTTGCCTAATGTCAGCAATTTCCTATCATTTCA-----TTATttcaagtgtcaaa--tatttctcaaatccaactgttgacaggcagcacagagagaactgcacactctcctgatgaaat-gtttttaatccaatttaaacttcat-aaaaaatttttgtagttcagttac----actcagtttatgtaaattttacaaatttcaacaactatagcttgtgcttctctgggtagaattagaactgtgtttgagttcagttatgaattacatatgtat----atcaattacaggtgcatttcagcatc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14417229 456 - 49578535 aggctaagg-tttctgtgtttcatttgttgaacacttgattatgga-ttacaacttattttgaaacaaatgccatcaaaatttagatgacttgtttccaaaactctaatac-ttttttgtagagcatttagagtgattcataaactatgtttcaaagtt-aaaagctgcctggtgtcagcaatttcatatcatttca-----ttatttcaagtgtcaaatttatttctcaaatccagctgttgacaggcagcagagaga-aacggctcactctcctgatgaattcttttttaatccaatttaaacttcat-aaaaaatttttatagttcaattactctaactccatttatatacagtttacaaatttcaacaactatagcttgtacttctctgggtagaattagaagggtgtttgagctcagttattaattacatatgtac----atcaagtacaagtggatttcagccta i calJac3.chr19 C 0 C 0 s canFam3.chr7 36488541 456 + 80974532 aggctgaga-cttttgtatttcatttgttgaacacctggtaacagacttacaacttattttgaacaaagcgtgatcaaaatttaaaagacccatttccaaaattccaatac-gtttttgcagaacaccgaggtaaactcatacaatatatttcaaagttaaaaaaatatctaatgtcagcaatttcctatcatttaagctagttctttagagtcccaa---catttctcaaatctcaccgatgacagacggtggagagagaactgctcattcccctaataaaat-agttgtttgttaacataaaattgatcacaaaattttt---gttcagtcac----tct--atatgtgtaagtctggcagattttgacaaccgtagcttgttcttctccagggagaaacagaagtgtgtttgagacccgttacttgttatgtgcatgcagtaaccagtgacaggtgcatttctgcGTA i canFam3.chr7 I 110 I 19 e mm10.chr1 178894833 4250 + 195471971 I a score=196101.000000 s hg38.chr1_KI270759v1_alt 363741 80 + 425601 ataagtttctcagcttggaacattatATCttttttt-t---a----ttttttatt--tttttgagactgagtctttctccatcacccagg s panTro4.chr1 225121514 80 + 228333871 ataagtttctcagcttggaacattatATCttttttt-t---a----ttttttatt--tttttgagactgagtctttctccattacccagg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226493062 78 - 229942017 ataagtttctcagcttggaacattCTATCttttttt----------gtttttatt--tttttgagactgagtctttctccgtcacccagg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140380607 74 - 143122389 ataagtttctcagcttggAAC-TTATGTCtttattt-------------tttatt--tttttgagactgagtctttctccgtcacccagg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17084011 83 - 229590362 ataagtttctcagcttggaacattatATCttttttt-tttaa----ttttttgtt--tttttgagattgagtcttgctctgtcgcccagg i rheMac3.chr1 C 0 I 34 s macFas5.chr1 223848479 83 - 227556264 ataagtttctcagcttggaacattatatCttttttt-tttaa----ttttttgtt--tttttgagattgagtcttgctctgtcacccagg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16898350 82 - 220367699 ATAAGTTTCTCAGCTTGGaacattatatcttttttt-tttaa-----tttttgtt--tttttgagattgagtcttgctctgtcacccagg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82698239 82 + 85787240 ataagtttctcagcttggaacattatATC-----TT-TTTAAAAAtttttttatt--tttttgagattgagtcttgctctgtcacccagg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14417685 86 - 49578535 atacgtttctcagcttggaacattatATCtttttttgtttgt----ttgtttgtttgtttttgcgactgagtctcgctctgccacccagg i calJac3.chr19 C 0 I 28 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36488997 19 + 80974532 I a score=17465.000000 s hg38.chr1_KI270759v1_alt 363821 8 + 425601 actgcaac s panTro4.chr1 225121594 8 + 228333871 actgcaac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226493140 8 - 229942017 actgcaac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140380681 8 - 143122389 actgcaac i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223848562 8 - 227556264 actgcaac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16898432 8 - 220367699 actgcatc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82698321 8 + 85787240 agtgcaac i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14417799 8 - 49578535 actgcgac i calJac3.chr19 I 28 C 0 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36488997 19 + 80974532 I e rheMac3.chr1 17084094 34 - 229590362 I a score=265548.000000 s hg38.chr1_KI270759v1_alt 363829 92 + 425601 ctccgcttcccgagttcaagtgatcctcctgcctcagcctcccaagtagctgggactacaggcacgcaccaccatgcccagctaatttttgt s panTro4.chr1 225121602 92 + 228333871 ctccgcttcccgagttcaagtgatcctcctgcctcagcctcccaagtagctgggactacaggcatgcaccaccacgcccagctaatttttgt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226493148 92 - 229942017 ctctgcctcctgagttcaagtgatcctcctgcctcagcctcccaagtagctgggactacaggcacgcaccaccacgcccagctaagttttgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140380689 92 - 143122389 ctccgcctcccatgttcaagtgatcctcctgcctcagcctcccaagtagctgggattacaggcatgtgccaccacactcggctaattttttt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17084128 92 - 229590362 ctctgcctcctgggttcaagcaattctcctccctcagcctcccaagtagctgggactacaggcaggcatcaccacgcccaggtaatttttgt i rheMac3.chr1 I 34 C 0 s macFas5.chr1 223848570 92 - 227556264 ctccacctcctgagttcaagtgatcctcctgcctcggcctcccaagtagctgggactacaggcaggcatcaccacgcccaggtaatttttgt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16898440 92 - 220367699 ctccacctcctgagttcaagtgatcctcctgccttggcctcccaagtagctgggactacaggcaggcatcaccacgcccagctaatttttgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82698329 92 + 85787240 ctccacctcctgagttcaagtgatcctcctgcctcggcctcccaagtagctgggactacaggcaggcatcaccacgctcagctaatttttgt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14417807 92 - 49578535 ctctgcctcctggattcaagtgatcctcctgcatcagcctccctagtagctgggactacaagcatgtgccaccatgcctggctaatttttgt i calJac3.chr19 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36488997 19 + 80974532 I a score=208298.000000 s hg38.chr1_KI270759v1_alt 363921 92 + 425601 atttttggtagagctggggtttcaccatgttgcccaggctggtctcaaactcctgacctccagtgatccacccgcgg----tcagcctcccaaagt s panTro4.chr1 225121694 91 + 228333871 atttttggtagagatggggtttcaccatgttgcccaggctggtctcaaactcctgacctccagtgatccacccgcc-----tcagcctcccaaagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226493240 91 - 229942017 atttttggtagagatggggtttcaccatgttgcccaggctggtctcaaactcctgacctccagtgatccacccgcc-----tcagcctcccaaagt i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17084220 91 - 229590362 atttttaggagacatggggtttcaccacgtggcccaggctggtctcaaattcctgacctccagtgatctgcccgcc-----tcggcctcccaaagt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223848662 91 - 227556264 atttttaggagacatggggtttcaccacgtggcccaggctggtctcaaattcctgacctccagtgatctgcccgcc-----tcggcctcccaaagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16898532 91 - 220367699 atttttagtagacatggggtttcaccatgtggcccaggctggtctcaaactcctgacctccagtgatctgcccgcc-----tcggcctcccaaagt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82698421 91 + 85787240 atttttagtagagatggggtttcaccacgtggcccaggctggtctcaaactcctgacctccagtgatctgcccgcc-----tcggcctcccaaagt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14417899 96 - 49578535 atttttagtagagatggggtttcaccatgttgctcaggttgttctcgaactcctgacctccagtgatccacctgcctcagctcagcctcccagagt i calJac3.chr19 C 0 I 2 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36488997 19 + 80974532 I e nomLeu3.chr5 140380781 0 - 143122389 C a score=95758.000000 s hg38.chr1_KI270759v1_alt 364013 103 + 425601 cctggcattagaggcatgagccactgctcctggcTGGAACATTATGTCCtttttt-----ttttttttttttttttt--gagacggagtctctctctgtcgcccaggctg s panTro4.chr1 225121785 105 + 228333871 cctggcattacaggcatgaagcactgctcctggcTGGAACATTATGTCCtttttt-----tttttttttttttttttttgagatggagtctctctctgttgcccaggctg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226493331 93 - 229942017 cctggcattacaggcatgagccactgctcctggctGGAACATTATGTCCtttttt-----ttttttttttt--------gagacggag----tctctgtcgcccaggctg i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17084311 68 - 229590362 c----------------------------ctggCTGGAACATTAAGTCCtttttt-----cttttttttt---------gagacagagtcttgctctgttgcccaggctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223848753 68 - 227556264 c----------------------------ctggCTGGAACATTAAGTCCTTtttt-----cttttttttt---------gagacagagtcttgctttgtcgcccaggctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16898623 65 - 220367699 c----------------------------ctggctGGAAcattatgtcctttt--------ttttttttt---------gagacagagtcttgctctgtcgcccaggctg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82698512 101 + 85787240 cctgggattacaggcgtgagtcactgcagctggcTGGAACATTATATCCtttttttgttgttgttgtttt---------gagacagagtcttgctctgtcgcccaggctg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36488997 19 + 80974532 I e calJac3.chr19 14417995 2 - 49578535 I e nomLeu3.chr5 140380781 0 - 143122389 C a score=248912.000000 s hg38.chr1_KI270759v1_alt 364116 125 + 425601 gagtgcagtggtgcaatctcagctcactgc-acctctgcctcctgggtttaagcaattctcctccctcagcctcccaag------------tggctgggattacaggcaggtgccaccacacttggctaatttttttt-- s panTro4.chr1 225121890 125 + 228333871 gagtgcagtggtgcaatctcagctcactgc-acctctgcctcctgggtttaagcaattctcctccctcagcctcccaag------------tagctgggattacaggcaggtgccaccacacttggctaatttttttt-- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226493424 124 - 229942017 gagtgcaatggtgcaatctcagctcactgc-acctctgcctcctgggtttaagcaattctcctccctcagcctcccaag------------tagctgggattacaggcatgtgccaccacactcggctaa-ttttttt-- i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17084379 123 - 229590362 gaatgcaatggtgcaatctcagctcac-gc-atcgctgcctcctgggttcaagcaattctcctccctcagcctcacaag------------tagctgggattacaggcatgtgccaccacacttggctaattttttt--- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223848821 123 - 227556264 gaatgcaatggtgcaatctcagctcac-gc-atctctgcctcctgggttcaagcaattctcctccctcagcctcccaag------------tagctgggattacaggcatgtgccaccacacttggctaattttttt--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16898688 120 - 220367699 gaatgcaatggtgcaatctcagctcac-gc-atctctgcctcctgggttcaagcaattctcctccttcagcctcccaag------------tagctgggattacaggcatgtgccaccacactt---taattttttt--- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82698613 121 + 85787240 gaatgcaatggtgcaatctcagctcactgc-atctccgcctcctgggttcaagcaatt---ctcccttagcctcccaag------------tagctgggattacaggcatgtgccaccacacttggctaattttttt--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14417997 133 - 49578535 gagtgcagtgctgcagtctcagctcactgcgacctccacctcctgggttcaagcagttctcct------gcctcctgaggcagaactgcttgaactgggattacaggcacccaccaccatgcctggctaatgttttt-gt i calJac3.chr19 I 2 C 0 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36488997 19 + 80974532 I e nomLeu3.chr5 140380781 0 - 143122389 C a score=169753.000000 s hg38.chr1_KI270759v1_alt 364241 55 + 425601 gtttttagtatagatggggtttcaccatattggccaggctggtcttgaactcctg s panTro4.chr1 225122015 55 + 228333871 gtttttagtatagatggggtttcaccatattggccaggctggtcttgaactcctg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226493548 54 - 229942017 gtttttagtatagatggggtttcacc-tattggccaggctggtcttgaactcctg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140380781 55 - 143122389 gtttttagtatagatggggtttcaccatattggcgaggctggtcttgaactcctg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17084502 55 - 229590362 ttttttagtatggatggggtttcaccatattggccaggctggtcttgaactcctg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223848944 55 - 227556264 gtttttagtatggacggggtttcaccatattggccaggctggtcttgaactcctg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16898808 55 - 220367699 gtttttagtatggacggggtttcaccatattggccaggctggtcttgaactcttg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82698734 55 + 85787240 gtttttagtatggacggggtttcaccatattggccaggctggtcttgaactcctg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14418130 55 - 49578535 gtttttagtagagacggggtttcaccctatcggccaggctggtctcgaactcctg i calJac3.chr19 C 0 C 0 e mm10.chr1 178894833 4250 + 195471971 I e canFam3.chr7 36488997 19 + 80974532 I a score=259172.000000 s hg38.chr1_KI270759v1_alt 364296 80 + 425601 acattatgtcttaaagtgctaactctgttcactgcacataacctcatatgttcctag-atgagaccactgaaatagaaagt s panTro4.chr1 225122070 79 + 228333871 acGTTatgtcttaaagtgctaactctgttcactgcacata-cctcatatgttcctag-atgagaccactgaaatagaaagt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226493602 79 - 229942017 acattatgtcttaaagtgctaactctgttcactgcaaata-cctcacatgttcctag-acgagaccactgaaatagaaagt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140380836 79 - 143122389 acattatgtcttaaagtgctaattctgttcactgcacata-cctcacatgttcttag-atgagaccactgagatagaaagt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17084557 77 - 229590362 acattatgtcttaaagtgctaactctgttcactgcgcata-cctcacatgttcctag-atgagaccactgaaatagaaa-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223848999 79 - 227556264 acattatgtcttaaagtgctaactctgttcactgcgcata-cctcacatgttcctag-atgagaccactgaaatagaaagt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16898863 79 - 220367699 acattATGTCTTAAAGTGCTAACTCTGTTCACTGCGCATA-CCTCACATGTTCCTAG-ATGAGACCACTGAAATAGAAAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82698789 79 + 85787240 acattatgtcttaaagtgctaactctgttcactgtgcata-cctcacatgttcctag-atgagaccactgaaatagaaagt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14418185 79 - 49578535 acGTTATATCttaaagtgctaactcttttcactgcacaca-cctcacatgttcctag-ataagaccactgaaacagaaagt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36489016 80 + 80974532 ACGGcacgtcctcaggcaggagccctgtcccctgcatgtg-ttccacatgcttctcgtatgggaccatggaggctgggagt i canFam3.chr7 I 19 C 0 e mm10.chr1 178894833 4250 + 195471971 I a score=738705.000000 s hg38.chr1_KI270759v1_alt 364376 245 + 425601 gaaagtctatccaattcttccatctcattttaat--aagtcttagtaataactacttgtattttg-aataaagaaatgaaaaatccaggacaaaataaaccagacaggatgcagggtgataggcatacact----gagacttc--taggcaaGT--GAGCA---------------------ACTGGTCAGCC---------------------GAATT---------AAAGCCCTTGG---------AGGGGTTCCTGTACCCTAGGTTCTTAATACATGCTTGTTGAATGAACAA--TCGGAGGTAGCTTATTTGT s panTro4.chr1 225122149 245 + 228333871 gaaagtctatccaattcttccatctcattttaat--aagtcttagtaataactacttgcattttg-aataaagaaatgaaaaatccaggacaaaataaaccagacaggatgcagggtaataggcatacact----gagacttc--taggcaagt--gagca---------------------tctggtcagcc---------------------GAATT---------AAAGCCCTTGG---------AGGGGTTCCTGTACCCTAGGTTCTTAATACACACTTGTTGAATGAACAA--TCGGAGGTAGCTTATTTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226493681 245 - 229942017 gaaagtctatccaattcttccatctcattttaat--aagtcttagtaataactacttgtattttg-aataaagaaatgaaaaatccaggacaaaataaaccagacaggatgcagggtaattggcatacact----gagacttc--taggcaagt--gagca---------------------tctggtcagcc---------------------GAATT---------AAAGCCCTCGG---------AGGGGTTCCTGTACCCTAGGTTCTTAATACACCCTTGTTGAATGAACAA--TCTGAGGTAGCGTATTTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140380915 249 - 143122389 gaaagtctatccaattcttccatctcattttaat--aagtcttagtaataactacttgtattttg-aataaagaaatgaaaaatccaggacaaaataaaccagacacgatgcagggtaataggcatacactgagaGAGACTTC--TAGGCAAGT--GAGTA---------------------TCTGGGCAGCC---------------------GAATT---------AAAGCCCTGGG---------AGGGGTTCCTGTACCCTAGGTTCTTAATACACGCTTGTTGAATGAACAA--TCGGAGGTAGCTTATTTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17084634 240 - 229590362 ----gtctacccaa---ttccatctcattttaat--aagtcttagtaataactacttgtattttg-aataaagaaatgaaaaatccaggacaaaataaaccagacaggatgcagggtaataggcatacact----gagacttc--tgggcaagtgagagca---------------------tctggtcagcc---------------------GAATT---------AAAGCCCTCGG---------AGGGGTTCCTGTAACCTAGGTTCTTAATCCACGCTTGTTGAATGAACAA--TCGGAGGTAGCTTATTTGT i rheMac3.chr1 C 0 I 317 s macFas5.chr1 223849078 244 - 227556264 gaacgtctgcccaa---ttccgtctcattttaat--aagtcttagtaataactacttgtattttg-aataaagaaatgaaaaatccaggacaaaataaaccagacaggatgcagggtaataggcatacact----gagacttc--tgggcaagtgagagca---------------------tctggtcagcc---------------------gaATT---------AAAGCCCTCGG---------AGGGGTTCCTGTATCCTAGGTTCTTAATCCACGCTTGTTGAATGAACAA--TCGGAGGTAGCTTATTTGT i macFas5.chr1 C 0 I 326 s papAnu2.chr1 16898942 244 - 220367699 GAACGTCTGCCCAA---TTCTATCTCATTTTAAT--AAGTCTTAGTAATAACTACTTGTattttg-aataaagaaatgaaaaatccagGACAAAATAAACCAGACAGGATGCAGGGTAATAGGCATACACT----GAGACTTC--TGGGCAAGTGAGAGCA---------------------TCTGGTCAGCC---------------------GAATT---------AAAGCCCTCGG---------AGGGGTTCCTGTATCCCAGGTTCTTAATCCACGCTTGTTGAATGAACAA--TCGGAGGTAGCTTATTTGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82698868 240 + 85787240 gaacgtctacccag---ttctatctcattttaat--aagtcttagtaataactacttgaattttg-----aagaaatgaaaaatccaggacaaaataaaccagccaggatgcagggtaataggcagacact----gagacttc--tgggcaagtgagagca---------------------tctggtcagcc---------------------GAATT---------AAAGCCCTCGG---------AGGGGTTCCTGGATCCTAGGTTCTTAATCCACACTTGTTGAATGAACAA--TCGGAGGTAGCTTATTTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14418264 248 - 49578535 gaaagtccacccagttcttccatctcattttaatacaagtcttaatcataactgcttgtactttg-aataaagacatgaagaatccaagacgaaacaaacaagagaggatacagggtaacaggcacacact----gagacttc--tgggcaagggagagca-----------------------tggtcagcc---------------------GAATG---------AAAACGCTCGG---------CGGGGTTCCTGTAGTCAAGGTTCTTAACACCTGCTTGTTAAATGAACAAC-TCAGAGGTAGCATATTTGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178899083 264 + 195471971 GAAGGTCCACCCATACTACCCATTCTATTTTGGTGAAAGTCTT-GTAATGGC------------------AAGTGAGAAGAAATCCAGACTGTAATAAAC-AGATGGGATACAAGATAATATA---AAACC----AAGACTTC--TGGGCATCCCAGGACATATATAGGGTCCATACTATGATCCTGTCTGTCTCATA---------------TGAATTTGTATTTCCAGGGCAGGTAG---------AGAGCCAATAGTATCTCAGGTTATAAATGCATGCTTGCAGAACAAATGAC-TCCAAAACTACCTGTTTGT i mm10.chr1 I 4250 C 0 s canFam3.chr7 36489096 273 + 80974532 --------gtccaact-tcccatctcgtcatttc--aaggcttaataata-------gtattttgttgtaaaagaatgaaacacttgagacaacgtaacctgggcaggatgcaggataatacacataaatg----gagacttttgtgggcaaactggaacc---------------------tatggtcagcctTGCAGAGCAGGGGGCTCATGGCATCTGTGTGT--GCAGTCCTGGGGCGAGTAGAAGGCCTACCTCTTTCATCCATTCTTCATGAATACTAGTTGGGTGAGCTACATCCCAACAAGCCTGTTTGT i canFam3.chr7 C 0 C 0 a score=344141.000000 s hg38.chr1_KI270759v1_alt 364621 93 + 425601 TTGAATAAGGCTTTCTGTGTGTTACTGCAAAGGAATGAGGATGGGACAGGTTTAGGCTTTGTAACAAGACCTCCCAAAGGCTAACACATAGGC s panTro4.chr1 225122394 93 + 228333871 TTGAATAAGGCTTTCTGTGTGTTAGTGCAAAGGAATGACGATGGGACAGGTTTAGGCTTTGTAACAAGACCTCCCAAAGGCTAACACATAGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226493926 93 - 229942017 TTGAATAAGGCTTTCTGTGTGTTAGTGCAAAGGAATGAGGATGGGACAGGTTTAGGCTTTGTAACAAGACCTCCCAAAGGCTAACACATAGGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140381164 93 - 143122389 TTGAATAAGACTTTCTGTGTGTTAGTGCAAAGGAATGAGGATGGGACAGGTTTCGGCTTTGTAACAAGACCCCCCAAAGGCTAACACATAGGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17085191 93 - 229590362 TTGAATAAGACTTTCTGTGTGTTAGTGCAAAGGAATGAGGATGGGGCAGGTTTAGGCTTTGTAACAAGACCCTCCAAAGGCTAACACATAGGT i rheMac3.chr1 I 317 C 0 s macFas5.chr1 223849648 93 - 227556264 TTGAATAAGACTTTCTGTGTGTTAGTGCAAAGGAATGAGGATGGGGCAGGTTTAGGCTTTGTAACAAGACCCTCCAAAGGCTAACACATAGGT i macFas5.chr1 I 326 C 0 s papAnu2.chr1 16899186 93 - 220367699 TTGAATAAGACTTTCTGTATGTTAGTGCAAAGGAATGAGGATGGGGCAGGTTTAGGCTTTGTAACAAGACCCCCCAAAGGCTAACACGTAGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82699108 93 + 85787240 TTGAATAAGACTTTCTGTGTGTGAGTGCAAAGGAATGAGGATGGGGCAGGTTTAGGCTTTGTAACAAGACCCTCCAAAGGCTAACATGTAGGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14418512 93 - 49578535 TAGAATAAGACTTTCTGTGTGTTAGCGCAAAGGAATGAGAATGGGACAAGTTTAGGCTTTGTGACAAGGCCCCTCAAAGGCTCCCACATAGGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178899347 92 + 195471971 CTAAACAGGACATTCTGTATGCCAGTGCAAGGGACTAAGAACAGGACACTTTGGAGCTTTTTAACAAGGTCTTCCAAAATCCTAC-CATgggc i mm10.chr1 C 0 I 240 s canFam3.chr7 36489369 80 + 80974532 CTGAACAAGATTTTCTCGGTGTTAGTAGGAAGGGAAGAAGATGGGGCAGCTCCAGGCTCCACAGCAAGACCCTTCAG---------CAT---- i canFam3.chr7 C 0 C 0 a score=47876.000000 s hg38.chr1_KI270759v1_alt 364714 14 + 425601 GGCTGCTTCCTCGG s panTro4.chr1 225122487 14 + 228333871 GGCTGCTTCCTCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226494019 14 - 229942017 AGCTGCTTCCTCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140381257 14 - 143122389 GGCTGCTTCCTCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17085284 14 - 229590362 GGCTGCTTCCTCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223849741 14 - 227556264 GGCTGCTTCCTCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16899279 14 - 220367699 GGCTGCTTCCTCTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82699201 14 + 85787240 GGCTGCTTCCTCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14418605 14 - 49578535 AGCTGCGTCCTCTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36489449 14 + 80974532 TACCATCTCCTCTG i canFam3.chr7 C 0 C 0 e mm10.chr1 178899439 240 + 195471971 I a score=125142.000000 s hg38.chr1_KI270759v1_alt 364728 37 + 425601 CAAGCAGAGATGACGCTTGTGGCCCT--------TTTTGAAACAC s panTro4.chr1 225122501 37 + 228333871 CAAGCAGAGATGACGCTTGTGGCCCT--------TTTTGAAACAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226494033 37 - 229942017 CAAGCAGAGATGACCCTTGTGGCCCT--------TTTTGAAACAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140381271 37 - 143122389 CAAGCAGAGATGACCCTTGTGGCCCT--------TTTTGAAACAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17085298 37 - 229590362 CAAGGAGAGATGACCCTTGTGGCCCT--------TTTTGAAACAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223849755 37 - 227556264 CAAGCAGAGATGACCCTTGTGGCCCT--------TTTTGAAACAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16899293 37 - 220367699 CAAGCAGAGATGACCCTTGTGGCCCT--------TTTTGAAACAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82699215 37 + 85787240 CAAGCAGAGATGACCCTTGTGGCCCT--------TTTTGAAACAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14418619 36 - 49578535 CAAGCAGAGATGACTTTTATGGCCCT--------TTTTG-GACAC i calJac3.chr19 C 0 I 311 s mm10.chr1 178899679 37 + 195471971 CAAGCCAGAATGGTACTTGCCACTCT--------TTCTGGGACAC i mm10.chr1 I 240 I 6 s canFam3.chr7 36489463 36 + 80974532 ---------CTGATATCTGTGTCCCCCGTTGCTATTGTGGAACAT i canFam3.chr7 C 0 C 0 a score=1301278.000000 s hg38.chr1_KI270759v1_alt 364765 445 + 425601 CTTTTTTACATGCCAGAGGTATT---TAACTTGACCGTACCAAATGGTACGGTCAAGTTAAAAGGGTTATCCG-CCCTTTTAACTCAAATATCCCGTTGGGATCAAACATTT---TTGCTCTGGAGACCTTTGTACCTGTGCAGCATCAGTATAAGGATAGCCTGGGGGTGGTAACCCAGACACAGCTAACAGCGGGGTCTGAG-TGGCTTGGCCAGAGTCTTGGCCTCAAATTGAGGGCACAGCAGTGGTTCTGACTGTTCCTCTTCGGGG--AACGTTGTACA------TCAGGAGGGGCCTGATGGTAATGTTGGTGTAAAATGTCTCTGCTGTGATCCACCCTTGAAGACTGTGAGCTGTGCAGAACGAAGCAGGTCATGGCTTGTCCTCTAGGATGTGATGGGAGGCTGAAAGCATCTCTCTGCTGTGACGTAGGAGG--GACCGTGAGCCTTATGCT s panTro4.chr1 225122538 428 + 228333871 CTTTTTTACATGCCAGAGGTATT---TAACTTGACCATACCAAATGGC-----------------TTTATCAG-CCCTTTTAACTCAAATATCCCGTTGGGATCAAACATTT---TTGCTCTGGAGACCTTTGTACCTGTGGAGCATCAGTATAAGGATAGCCTGGGGGTGGTAACCCAGACACAGCTAACAGCGGGGCCTGAG-TGACTTGGCCAGAGTCTTGGCCTCAAATTGAGGGCACAGCAGTGGTTCTGACTGTTCCTCTTCGGGG--AACGTTGTACA------TCAGGAGGGGCCTGACGGTAACGTTGGTGTAAAATGTCTCTGCTGTGATCCACCCTTGAAGACTGTGAGCTGTGCAGAACGAAGCAGGTCATGGCTTGTCCTCTAGGATGTGATGGGAGGCTGAAAGCATCTCCCTGCTGTGATGTAGGAGG--GACCATGAGCCTTATGCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226494070 428 - 229942017 CTTTTTTACATGCCAGAGGTATT---GAACTTGACTGTACCAAATGGC-----------------TTTGTCAG-CCCTTTTAACTCAAATATCCCGTTGGGATCAAACATTT---TTGCCCTGGAGACCTTTGTACCTGTGCAGCAACCATATAAGGATAGCCTGGGGGTAGTAACCCAGACACAGCTAACAGCGGGGCCTGAT-GGACTTGGCCAGAGTCTTGGCCTCAAATTGAGGGCACATCAGTGGTTCTGACTGTTCCTCTTCGGGG--AACGCTGTACA------TCAGGAGGGGCCTGATGGTAACGTTGGTGTAAAATGTCTCTGTTGTGATCCACCCTTGAAGATTGTGAGCTGTGCAGAACGAAGCAGGCCATGGCTTGTCCTCTAGGATGTGATGGGAGGCTGAAAGCATCTCTCTGCTGTGACATAGGAGG--GACCGTAAGCCTTATACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140381308 426 - 143122389 CTTTTTTACATGCCAGAGGTATT---TAACTGGACTGTAACAAATGGC-----------------TTTATCAG-CCCTTTTAACTCAAATATCCCGTTGGGATCAAACATTT---TTGCTCTGGAGACCTTTGTACCTGTGCAGTATCAATATAGGGATAGCCTGGGGGTAGTAACCCAGACACAGCTAACAGCGGGGCCTGAT-TGACTTGGCCGGAGTCTTGGCCTCCAGTTGAGGGCGCATCAGTGGTTCTGACTATTCCTCTTC-GGG--AACGTTGTACA------TC-GGAGGGGCCTGATGGTAACGTTGGTGTAAAATGTCTCTGCTGTGATCCACCCTTTAAGATTGTGAGCTGTGCAGAATGAAGCAGGCCATGGCTTGTCCTCTAGGATGTGACGGGAGGCTGAAAGCATCTCTCTGCTGTGACATAGGAGG--GACCATGAGCCTTATTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17085335 433 - 229590362 CTCTTTTACATGCCAGAGGTATT---TAACCTGACTGTACCAAATGGC-----------------CTTATCAG-CCCTTTTAACTCAAATATCCCATTGGGATCAAACATTT---TGGCTCTGGAGACCTTTGTACCTGTGCAGTGTCACTATAAGGATAGCCTGGGGGTGGCAACCCAGACACAGCTAACAGCGGGGACGGAC-TGACTTCGCCAGAGTCTTGGCCCCAAATTAAGGGTACATCAGCGGTTCTGACTGTTCCTCTTCGGGC--AACATTGTGCACCTTCCTCAGGAGGAGCCTGATGGTAACGCTGGTGTAAAATGGCTCTGTGTGTCTTCACCCTTGGAGACTGTGAGCTGTGCAGACTG-AGCAGGCCATGGTGTGTCCTCTAGGATGGGATGGGAGGTTGAAAGCGTGTCTCTGCTGTGATGTAGGAGG--GACCGTGAGCCTTATACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223849792 433 - 227556264 CTCTTTTACATGCCAGAGGTATT---TAACCTGACTGTACCAAATGGC-----------------CTTATCAG-CCCTTTTAACTCAAATATCCCATTGGGATCAAACATTT---TGGCTCTGGAGACCTTTGTACCTGTGCAGTGTCACTATAAGGATAGCCTGGGGGTGGCAACCCAGACACAGCTAACAGCGGGGACGGAC-TGACTTCGCCAGAGTCTTGGCCCCAAATTAAGGGTACATCAGCGGTTCTGACTGTTCCTCTTCGGGC--AACATTGTGCACCTTCCTCAGGAGGAGCCTGATGGTAACGCTGGTGTAAAATGGCTCTGTGTGTCTTCACCCTTGGAGACTGTGAGCTGTGCAGACTG-AGCAGGCCATGGCATGTCCTCTAGGATGTGATGGGAGGTTGAAAGCGTTTCTCTGCTGTGATGTAGGAGG--GACCGTGAGCCTTATACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16899330 415 - 220367699 CTTTTTTACATGCCAGAGGTATT---TAACTTGACTGTACCAAATGGC-----------------TTTATCAG-CCCT------------------TTGGGATCAAACATTT---TGGCTCTGGAGACCTTTGTACCTGTGCAGTGTCAATATAAGGATAGCCTGGGGGTGGCAACCCAGACACAGCTAATGGCGGGGACGGAC-TGACTTCACCAGAGTCTTGGCCCCAAATTGAGGGTACTTCAGCGGTTCTGACTGTTCCTCTTCGGGC--AACATTGTGCACCTTCCTCAGGAGGAGCCTGATGGTAAGGCTGGTGTAAAATGGCTCTGTGTGTCTTCACCCTTGGAGACTGTGAGCTGTGCAGACTG-AGCAGGCCATGGCGTGTCCTCTAGGATGGGATGGAAGGTTGAAAGCGTCTCTCTGCTGTGATGTAGGAGG--GACCGTGAGCCTTATACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82699252 433 + 85787240 CTTTTTTACACGCCAGAGGTATT---TAACTTGACTGTACCAAATGGC-----------------CTTATCAG-CCCTTTTAACTCAAATATCCCATTGGGATCAAACATTT---TGGCTCTGGAGACCTTTGTACCTGTGCAGTGTCACTATAAGGATAGCCTGGGGGTGGCAACCCAGACACAGCTAACAGCGGGGACGGAC-TGGCTTCACCAGAGTCTTGGCCCCAAATTGAGGGTACATCAGCGGTTCTGACTGTTCCTCTTCGGGC--AACACTGTGCACCTTCCTCAGGAGGGGCCTGATGGTAACGCTGGTGTAAAGTGGCTCTGCGTGTCTTCACCCTTGGAGACTGAGAGCTGTGCAGACTG-AGCAGGCCATGGCGTGTCCTCTAGGATGGGATGGGAGGTTGACAGCGTCTCTCTGCTGTGATGTAGGAGG--GACCGTGAGCCTTATACT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14418966 410 - 49578535 CTTCTCTACATGCCAGAGATACT---TCACTTGACTGTACCAAATGGC-----------------TTCATCAG-CCCTTTCAACTCACATATCCTGTTGGGATCAAACATTT---TTGCTCTGGAGACCTTTGTACCTGTGCAGTGTCAATATAAGGACGGCCTGGGAGTCGCAGCACAGTCAGAGCTAACAGAGGGGCCTCAT-TGACTTGGCCACAGTCTTGGCCTCAAATTGAGGGCACTTCATTGGTTCTGACTGTTCCTCTTTGGGG--AACGTCATATCCATTTGTCAAGAGG-GCCTGATGGTAACCCTGGTGTAAAACGTCCCTACTGTGATCTGCCCTTGAAAACTGT--GCTGTGCAGACCCAAGCAGGCCATGAC---------------------GCGGCTGACAGACTCTCTCTGCTGTCACGTGGCAGG--GACCATGAGCCTTATACT i calJac3.chr19 I 311 C 0 s mm10.chr1 178899722 394 + 195471971 ATATTGTCTATGTCTAAGGTGTT--------AGACTATGCCAACAAGT-----------------TTGACCAGCCCCTTTTAGCCAAGACAAACTGCT--------ACACCTCAGTAGGTCCTGTGAACTTCATATCTG---GATATCTACCTAGGAATAGCCAAGTGTTTATAACATGTACACATCACATTGTATTGA------TGAGCTGACCAGAACCTTGCCATCAGATTAAGACCACAT-AGTCGGTCTATTGGTTTCTCTTTGGGGACACTGTTGTGCCCACTCCTTAA---------GATGACACCCTGCATGTAAA-TGTCCTTCCTGTAATATGCCATTGAGGACTGTGATATGTGTGGACCCAGGCAGGCCA--GCTTGCTCT--------------GAGACTGAGAGAGTCAGTCTGCTCTTACACAGACAGAAGAGTCTGAGCTTTGTAGG i mm10.chr1 I 6 C 0 s canFam3.chr7 36489499 424 + 80974532 CTGTTCTGGGTGCCAAAGGTATTGATGACTTTGACTCTA-CACATGGT-----------------TTTATCAG-CCCTTTTACCCTATACACCCTGCTGAGACCAAACATTT---TTACTCTGGAGACCTTGAT-TCTGTGCAGTATCAACCTCGGAAAAGCCATGGGATCGTAACACAGATGCAGTTGACAGACTGGTCTGACTTGACTTGGCCAGAGTCTTG--TTTCAGCTGAGGGCTTTTTGGTGGATCTGGCTGTTCTTCTTGGGGG--GAAGTTGTATACATTTTTTTAGAGGGGCCTGCCAGTAACCTGGGTGTAGA-CGTCCCCCATGTCATGTGTCCTAGAAGATGGTGGGCTGTGCACACCTGAGTAGGCC------TGTCCTCTAGAATGCTTTGGGCAGCTG---GCATCTCCCTGCCATCACTCAGGGGA--GACTGGGAGCCTTCTGCT i canFam3.chr7 C 0 C 0 a score=126937.000000 s hg38.chr1_KI270759v1_alt 365210 47 + 425601 AG--GCACTCCTTCCAGCCCAAGGCAGCATCGTCTGCTTTGGtttt-------------ctt s panTro4.chr1 225122966 47 + 228333871 AG--GCACTCCTTCCAGCCCAAGGCAGCATCGTCTGCTTTGGtttt-------------ctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226494498 47 - 229942017 AG--GCACTCATTCCAGCCCAAGGCAGCATCATCTGCTTTGGtttt-------------ctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140381734 47 - 143122389 AG--GCACTCATTCCAGCCCAAGGCAGCATCATCTGCTTTGGtttt-------------ctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17085768 59 - 229590362 AG--GCACTCATTCCAGCCCAGGGCAGCAGCATCTGCTTTGGTTTTAtttc-ttccttcctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223850225 55 - 227556264 AG--GCACTCATTCCAGCCCAGGGCAGCAGCATCTGCTTTGGtttta-----ttccttcctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16899745 59 - 220367699 AG--GCACTCATTCCAGCCCAGGGCAGCAGCATCtgctttggttttatttc-ttccttcctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82699685 59 + 85787240 AG--GCACTCATTCCAGCCCAAGGCAGCAGCATCTGCTTTGGTTttatttc-ttccttcctt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14419376 60 - 49578535 AG--GCACTCACTGCAGCCCGAGGCAGCCGCACCTGCCTTGGTTttattttatttcttcctt i calJac3.chr19 C 0 C 0 s mm10.chr1 178900116 39 + 195471971 AGCAGTACTCACTGGAACCC----------CAGTTCAGTTGGTTTT-------------CTT i mm10.chr1 C 0 I 545 e canFam3.chr7 36489923 0 + 80974532 C a score=429828.000000 s hg38.chr1_KI270759v1_alt 365257 137 + 425601 tctttc-tttttttgaaa------cactctgcccaggctggagtgcagtggcacgatctcggctcactgcagccttaacctcctgggctcaagctatcctcctgactcagcctcccaagtagctgggacaacaggcgtgtgcca s panTro4.chr1 225123013 137 + 228333871 tctttc-tttttttgaaa------cactctgcccaggctggagtgcagtggcacgatctcggctcactgcagccttaacctcctgggctcaagctatcctcctgactcagcctcccaagtagctgggacaacaggcgtgtgcca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226494545 143 - 229942017 tctttc-tttttttgaaacagtctcactctgcccaggctagagtgcagtggcacgatctcggctcactgcagccttaacctcctgggctcaagctatccttctgactcagcctcccaagtagctgggacaacaggcatgtgcca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140381781 143 - 143122389 tctttc-tttttttgaaacaggctcactctgtccaggctagagtgcagtggcatgatctcggctcactgcagccctaacctcctgggctcaagctatcctcctgactcagcctcccaagtagctgggacaacaggcatgtgcca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17085827 143 - 229590362 cctttc-tttttttgaaacagtctcactctgcccaggctggagtgcggtggcatgatctcagctcactgcagccttaacctcctgggctcaagctatcctcctgcctcagcctcccaagtagctgggacaacaggcacgtgcca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223850280 143 - 227556264 cctttc-tttttttgaaacagtctcactctgcccaggctggagtgcagtggcatgatctcagctcactgcagccttaacctcctgggctcaaggtatcctcctgcctcagcctcccaagtagctgggacaacaggcacgtgcca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16899804 144 - 220367699 cctttcttttttttgaaacagtctcactctgcccaggctggagtgcggtggcataatctcggctcactgcagccttaacctcctgggctcaagctgtcctcctgcctcagcctcccaagtagctgggacaacaggcatgtgcca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82699744 143 + 85787240 cctttc-tttttttgaaacagtctcactctgcccaggctggagtgcggtggcatgatctcagctcactgcagccttaacctcctgggctcaagctatcctcctgcctcagcctcccaagtagctgggacaacaggcatgtgcca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14419436 140 - 49578535 tctttc--ttttctgaaacagtct--ctctgcccaggccggagtgcaatggcaggatctcggctcactgcagccttgaccttctgggctcaagctatcctcctgcctcagcctcccaagtagcggggacaacaggcatgtgcca i calJac3.chr19 C 0 C 0 e mm10.chr1 178900155 545 + 195471971 I e canFam3.chr7 36489923 0 + 80974532 C a score=388212.000000 s hg38.chr1_KI270759v1_alt 365394 149 + 425601 ccatgcccggctacttttttaaatatttttaatagagatggggtttcgccatgtgtcccaggctggtctcaaactcctggattcagacaatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccg--tgcctggc s panTro4.chr1 225123150 149 + 228333871 ccatgcccggctactttttaaaatatttttaatagagatggggtttcgccatgtggcccaggctggtctcaaactcctggattcagacaatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccg--tgcctggc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226494688 148 - 229942017 ccatgcctggctactttttt-tatatttttaatagagatggggtttcgccatgtggcccaggctggtctcaaactcctggattcagacaatctgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccg--tgcctggc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140381924 150 - 143122389 ccatgcctggctactttttt-aatatttttaatagagatggggtttcaccatgttgcccaggctggtctcaagctcctggattcagagagtctgcccgcctcggcctcccaaagtgctaggattacaggtgtgagccaccgtttgcctggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17085970 148 - 229590362 ccatgcccggctaatttttt-tatatttttagtagagatggggtttcgccacgttgcccaagctggtctcgaactcttggattcagacaattggcctgcctcggcctcccgaagtgctgggattacaggcttgagccacct--cgcccagc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223850423 148 - 227556264 ccatgcccggctaatttttt-tatatttttagtagagatggggtttcgccacgttgcccaagctggtctcgaactcttggattcagacaattggcctgcctcggcctcccaaagtgctgggattacaggcttgagccacct--cgcccagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16899948 148 - 220367699 ccatgcccggctaatttttt-tatatttttagtagagatggggtttcgccatgttgcccaagctggtctcgaactcttggattCAGACAattggcctgcctcggcctcccaaagtgctgggattacaggcttgagccacct--cgcccagc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82699887 148 + 85787240 ccatgcccggctaatttttt-tatatttttagtagagatggggttttgccatgttgcccaagctggtctcgaactcttggattcagacaattggcctgcctcggcctcccaaagtgctgggattacaggcttgagccacct--cgcccggc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14419576 147 - 49578535 ccatgcctggctaatttttt--atatttttagtagagacggggtttcaccatgttacccaggctggtcttgaactcctggattcagacaatctgccgaccttggcctcccaaagtgctgggattacaggcatgagccacca--cgcatggc i calJac3.chr19 C 0 I 2 s canFam3.chr7 36489923 30 + 80974532 ---------------------------------------------------------CCATGCTCGTT-------------------CAATCTG--------------------------------AGGCAGGGGCAT------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178900155 545 + 195471971 I a score=402625.000000 s hg38.chr1_KI270759v1_alt 365543 153 + 425601 cTGCTTTGGTTTTATTCTGACTGTGGCTCCTAGGAAGAAAAAGAAAAGATGATGCTTTGGAAGCTGTAGGGTTGGGAAGCT------GGAGACTTCTTGTGATGGAGAGGTACACCCAGTAGATACTTATTTaaatacttatagaaagacgactttatg s panTro4.chr1 225123299 153 + 228333871 cTGCTTTGGTTTTATTCTGACTGTGGCTCCTAGGAAGAAAAAGAAAAGATGATGCTTTGGAAGCTGTAGGGTTGGGAAGCT------GGAGACTTCTTCTGATGGAGAGGTACACCCAGTAGATACTTATTTaaatacttatagaaagacaactttatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226494836 153 - 229942017 cTGCTTTGGTTTTATTCTGACTGTAGCTCCTATGAAGAAAAATAAAAGGTGATGCTTTGGAAGTTGTAGAGTTAGGAAGCT------GGAGACTTCTTCTGATGGAGAGGTACACCCAGTAGATACTGATTTaaatacttacagaaagatgactttatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140382074 153 - 143122389 cTGCTTGGGTTTAATTCTGACTGTGGCTCCTATGAAGAAAAAGAAAAGGTGATGCTTTGGAAGTTGTAGAGTTAGGAAGCT------GGAGACTTCTTCTGATGGAGAGGTACACCCGGTAGATACTTATTTaaatacttacagaaagatgactttatg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17086118 149 - 229590362 cTGCTTTGGTTTTATTCTGACTGTGGCTCCTATGAAGGAAAAGAAAAGGTGATGCTTTGGAAGTTGTAGAGTTAGGAAGCT------GGAGACTTC---TGATGGAGAGGTACACCCAGTAGATACTTATTTAAATGCTTACGGAAAGGTGA-TTTGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223850571 149 - 227556264 cTGCTTTGGTTTTATTCTGACTGTGGCTCCTATGAAGGAAAAGAAAAGGTGATGCTTTGGAAGTTGTAGAGTTAGGAAGCT------GGAGACTTC---TGATGGAGAGGTACAcccagtagatacttatttaaatgcttacggaaaggtga-tttgtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16900096 149 - 220367699 ctgctTTGGTTTTATTCTGACTGTGGCTCctgtgaaggaaaagaaaaggtgatGCTTTGGAAGTTGTAGAGTTAGGAAGCT------GGAGACTTC---TGATGGAGAGGTACACCCAGTAGATACTTATTTAAATGCTTACAGAAAGGTga-tttgtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82700035 149 + 85787240 cTGCTTTGGTTTTATTCTGACTGTGGCCCCTATGAAGGAAAAGAAAAGGTGATGCTTTGGAAGTTGTAGAGTTAGGAAGCT------GGAGACTTC---TGATGGAGAGGTACACCCAGTAGATACTTATTTAAATGCTTACAGAAAGGTGA-TTTGTG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36489953 149 + 80974532 CTGCCTTGGTTTTACTCTGACCGTGATTCCTATGATGAAAAAGAGAAGGTAGCACTTTGGA---------GTTAGGAGGCTTGGATGGGAGACTTCTTTTGATGGGGAAGGGT-CTCATTCGatatttatttaaatatttataGAAAGGCAACACTAgg i canFam3.chr7 C 0 I 111 e mm10.chr1 178900155 545 + 195471971 I e calJac3.chr19 14419723 2 - 49578535 I a score=218248.000000 s hg38.chr1_KI270759v1_alt 365696 114 + 425601 ccggacactgtgttaggtcctggctatacaggaagaagagaagtggcatctgcccatcctacgcagttctccaggaaggagGTGGCAGGAGTGACATTTGGGCCATCCAGGCAA s panTro4.chr1 225123452 114 + 228333871 ccggacactgtgttaggtcctggctatacaggaagaagagaagtggcatctgcccatcctatgcagttctccaggaaggagGTGGCAGGAGTGGCATTTGGGCCATCCAGGCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226494989 81 - 229942017 ccggacactgtgttaggtcctggctatacaggaaggagagaagtggcgtctgcccatcctacgcagttctccgggaaggaa--------------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140382227 114 - 143122389 ccggacactgtgttaggtcctggctatacagGAAGAAGAGAAGTGGCATCTACGCATCCTACACAGTTCTGCAGGAAGGAGGCGGCAGGAGTGGCGTTCGGGACATCCAGGCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17086267 109 - 229590362 CTGGACACTGTGTTAGGTCCTGGCTATGCAG-----AAAGAAGTGGCGTCTGCCCGTCCTATGCAGCTCTCCAGGAAGGAGGCAGCAGGAGTGGCGTTCGGGCCATCCAGGTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223850720 108 - 227556264 ccggacactgtgttaggtcctggctatgcag------aagaaGTGGCGTCTGCCCGTCCTATGCAGCTCTCCAGGAAGGAGGCAGCAGGAGTGGCGTTCGGGCCATCCAGGCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16900245 109 - 220367699 ccagacactgtgttagGTCCTGGCTATGCAG-----AAAGAAGTGGCGTCTGCCCATCCTATGCAGCTCTCCaggaaggaggcagcaggagtGGCGTTCAGGCCATCCAGGCAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82700184 107 + 85787240 CCGGACAC--TGTTAGGTCCTGGCTATGCAG-----AAAGAAGTGGCGTCTGCCCATCCTATGCAGTTCTCCAGGAAGGAGGCAGCAGGAGTGGAGTTCAGGCCATCCAGGCAA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178900155 545 + 195471971 I e canFam3.chr7 36490102 111 + 80974532 I e calJac3.chr19 14419723 2 - 49578535 I a score=426497.000000 s hg38.chr1_KI270759v1_alt 365810 217 + 425601 CTCACCAAGTCCCTTCGCAGCACTCCTGAAAAGCTCTGAGATGTTTTGAAGCTAAAACAGACAAACAAAAGGGACCAAAGAGGTGGCATGAGTAGCATGAGTC--AGATGTG-------------ATTAATTCCTAATTCCTTAGCTGCTTCTGttt------------gtttgttttg-ttttgtgtttttgagatggagtctcactctgtcacccaggctggagtgcagtgcagtggcgcaat s panTro4.chr1 225123566 217 + 228333871 CTCACCAAGTCCCTTTGCAGCACTCCTGAAAAGCTCTGAGACGTTTTGAAGCTAAAACAGACAAACAAAAGGGACCAAAGAGGTGGCATGAGTAGCATGAGTC--AGATGTG-------------ATTAATTCCTAATTCCTTAGCTGCttcttttt------------gtttgttttg-ttttgtgtttttgagatggagtctcactttgtcacccaggctggagtgcagtgcagtggcgcaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226495070 174 - 229942017 -----------------------------------------------gaagctaaaacagacaaacaaaagggaccaaagaggtggcatgagtagCAAGAGTC--AGATGTG-------------ATTAATTCCTAATTCCTTAGCTGCTTCTttttgt--------tcgtttgttttg-ctttgtgtttttgagatggagtctcgctctgtcacccaggctggagtgcagtgcagtggtgcaat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140382341 229 - 143122389 CCCACCAAGTCCCTTCCCAGCGCTCCAGAAAAGCACTGAGATGTTTCGAAGCTAAAACAGACAAACAAAAGGGACCAAAGAGGTGGCATGAGTAGCATGAGTC--AGATGTG-------------ATTAATTCCTAATTCCTTAGCTGCTTCATTTTGtttgttttgttttttgttttg-ttttatgtttttgagatggagtctcactctgtcacccaggctggagtgcagtgcagtggcgcaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17086376 211 - 229590362 CCCACCAAGTCCTTTCGCAGCACTCCAGAAAAGCACTGAGATGTTTCAAAACTAAAACAGACAAACAACAGGGACCAAAGAGGTGGCATGAGTAGCATGAATC--AGATGTG-------------ATTAATTCCTAATTCCTTAGCTGCTGCttt--------------gtttgttttg-ttt----tttttgaaatggagtcttgctctgtcatccaggctagagtacagtgcagtggggcgat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223850828 211 - 227556264 CCCACCAAGTCCTTTCGCAGCACTCCAGAAAAGCACTGAGATGTTTCAAAACTAAAACAGACAAACAACAGGGACCAAAGAGGTGGCATGAGTAGCATGAATC--AGATGTG-------------ATTAATTCCTAATTCCTTAGCTGCTGCttt--------------gtttgttttg-ttt----tttttgaaatggagtctcgctctgtcatccaggctagagtacagtgcagtggtgcgat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16900354 211 - 220367699 CCCACCAAGTCCTTTCGCAGCACTCCAGAAAAGCACTGAGATGTTTCAAAActaaaacagacaaacaacagGGACCAAAGAGGTGGCATGAGTAGCATGAGTC--AGATGTG-------------ATTAATTCTTAATTCCTTAGCtgctgcttt--------------gtttgttttg-ttt----tttttgaaatggagtctcgctctgtcacccaggctagagtacagtgcaGTAGTGCGAt i papAnu2.chr1 C 0 M 50 s chlSab2.chr25 82700291 212 + 85787240 CCCACCAAGTCCTTTCACAGCACTCCAGAAAAGCACTGAGATGTTTCAAAACTAAAACAGACAAACAACAGGGACCAAAGAGGTGGCATGAGTAGCATGAGTC--AGATGTG-------------ATTAATTCTTAATTCCTTAGCTGCTGCttt--------------gtttgttttgtttt----tttttgaaatggagtctcgctctgtcacccaggctagagtacagtgcagtggtgcgat i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36490213 177 + 80974532 ctgcctatgtctct--gcgtctttcatggacaaatttaaaaagatttaaaaaaaTAAAATAAAAAGAAAGGCCTCTATGCAGATACTGTG------ATGGGTCCTAGATGTGTAGAAAGAAAAGAAGTGACCCCT----------------------------------GCCCATTTTA-TTCAGT-TCTTTAAGAAGTAGGCATCCTTCG----------TGGTATGTAA-------------- i canFam3.chr7 I 111 C 0 e mm10.chr1 178900155 545 + 195471971 I e calJac3.chr19 14419723 2 - 49578535 I a score=140015.000000 s hg38.chr1_KI270759v1_alt 366027 87 + 425601 ctcagctcactgcaacttccacctcccaggttcaagcgattctcctgcctcagcctcccaggtaactgggattac-aggcacacgcca s panTro4.chr1 225123783 87 + 228333871 ctcagctcactgcaacttccacctcccaggttcaagcgattctcctgcctcagcctcccaggtaactgggattac-aggcacacgcca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226495244 87 - 229942017 ctcagctcactgcaacttccacctcccagcttcaagtgattctgctgcctcagcctcccaggtaactgggattac-aggcacacgcca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140382570 87 - 143122389 ctcagctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcccaggtaactgggattac-aggcacacccca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17086587 88 - 229590362 ctcagctcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctccccggtagctgggattactaggcgctctcca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223851039 88 - 227556264 ctcagctcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccaggtagctgggattactaggcgctcgcca i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82700503 87 + 85787240 ctcagctcactgcaacctccgcctcgcaggttcaagtgactctcctgcctcagcctcccaggtagctgggattac-aggcgctcgcca i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36490390 39 + 80974532 -----CTCACTGAGAGCCCTTCATAGAACTTCAGAATGACACTG-------------------------------------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178900155 545 + 195471971 I e calJac3.chr19 14419723 2 - 49578535 I e papAnu2.chr1 16900565 50 - 220367699 M a score=319262.000000 s hg38.chr1_KI270759v1_alt 366114 133 + 425601 ccacgcttggctaattttt------gtatttttagtagagacggggtttcaccatgttggtcaggctggtcttaaactcctgacctcaagtgatcagcctgcctcggcctcccaaagtgctgg-gtttacagatgtgagc s panTro4.chr1 225123870 133 + 228333871 ccacgcttggctaattttt------gtatttttagtagagacggggtttcaccatgttggtcaggctggtcttaaactcctgacctcaagtgatcagcccgcctcggcctcccaaagtgctgg-gtttacagatgtgagc i panTro4.chr1 C 0 M 408 s ponAbe2.chr1 226495331 133 - 229942017 ccacgcctggctaattttt------gtatttttagtagagacggggtttcaccatgttggtcaggctggtcttgaactcctgacctcaagtgatccatccgcctcggcctcccaaagtgctgg-gtttacagatgtgagc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140382657 133 - 143122389 ccatgcctggctaattttt------gtatttttagtagagacggggtttcaccatgttggtcaggctggtcttgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgg-gtttacagatgtgagc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17086675 133 - 229590362 ccacgcctggctaattttt------gtatgtttagcagagacggggtttcaccatgttggtcaggctggtcttgaacacctgacctcaagtgatccacccgccttggcctcccaaagtgctgg-gtttacagatgtgagc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223851127 133 - 227556264 ccacgcctggctaattttt------gtatgtttagtagagacggggtttcaccatgttggtcaggctggtcttgaacacctgacctcaagtgatccacccgccttggcctcccaaagtgctgg-gtttacagatgtgagc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16900615 133 - 220367699 ccacgcctggctaattttt------gtatgtttagtagagacggggtttcaccatgttggtcaggctggtcttgaacacctgacctcaagtgatccacccgccttggcctcccaaagtgctgg-gtttacagatgtgagc i papAnu2.chr1 M 50 C 0 s chlSab2.chr25 82700590 133 + 85787240 ccatgcctggctaattttt------gtatgtttagtagagacggggtttcaccatgttggtcaggctggtcttgaacacctgacctcaagtgatccacccgccttggcctcccaaagtgctgg-gtttacagatgtgagc i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36490429 65 + 80974532 -----------TGATGTTTTGAAAAACATTTTTTAAAGGGGGGAGG----------------------------------------------------------------CACAAAGAAATGGCATAGGAAGATGTGATT i canFam3.chr7 C 0 C 0 e mm10.chr1 178900155 545 + 195471971 I e calJac3.chr19 14419723 2 - 49578535 I a score=145995.000000 s hg38.chr1_KI270759v1_alt 366247 77 + 425601 caccaagcccggccCCCTATTTCCTTATCTTCTTATCCGCAGCAGGACTTTGAGAAACGGCTCAGTT-AGGGTCTTGC s ponAbe2.chr1 226495464 77 - 229942017 caccatgcctggccCCCTATTTCCTTATCTTCTTATCGGCAGCAGGACTTTGAGAAACGGCTCAGTT-AGGGTCTTGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140382790 77 - 143122389 caccatgcccggccCCCTATTTCCTTATCTTCTTATCGACAGCAGGACTTTGAGAAACGGCTCAGTT-AGGGTCTTGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17086808 76 - 229590362 caccacatccgg-ccCCTATTTCCTTAGCTTCTTATCAGCAGCAGGACTTCGAGAAACGGCTCAGTT-AGGGTCTTGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223851260 76 - 227556264 caccacatccgg-ccCCTATTTCCTTAGCTTCTTATCAGCAGCAGGACTTCGAGAAACGGCTCAGTT-AGGGTCTTGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16900748 76 - 220367699 caccacatccgg-cccctATTTCCTTAGCTTCTTATCAGCAGCAGGACTTTGAGAAACGGCTCAGTT-AGGGTCTTGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82700723 76 + 85787240 caccacatccgg-ccCCTATTTCCTTAGCTTCTTATCAGCAGCAGGACTTTGAGAAACGGCTCAGTT-AGGGTCTTGC i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36490494 65 + 80974532 ----------AA-CTCCTGATTTGCAAGCTTCTTGTCACTGGT--GGCTTTGACAAACTGCCCAGTTAAGGATCTTGC i canFam3.chr7 C 0 C 0 e mm10.chr1 178900155 545 + 195471971 I e calJac3.chr19 14419723 2 - 49578535 I e panTro4.chr1 225124003 408 + 228333871 M a score=149571.000000 s hg38.chr1_KI270759v1_alt 366324 61 + 425601 AGGGATAACAGTG-ATTAGAGCCTGAACACAAACTACATTTATCCCATGTCAGAAATG--AATA s ponAbe2.chr1 226495541 61 - 229942017 AGGGATAACAGTG-ATTAGAGCCTGAACACAAACTACATTTATCCCATGTCAGAAATG--AATA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140382867 61 - 143122389 AGGGGTAACAGTG-ATTAGAGCCTGAACACAAACTACATTTATCCCATGTCAGAAATG--AATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17086884 61 - 229590362 AGGGATAAAAGTG-ATTAGAGCCTGAACACAAACTACATTTATCCCATGTCAGAAATT--AATA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223851336 61 - 227556264 AGGGATAAAAGTG-ATTAGAGCCTGAACGCAAACTACATTTATCCCATGTCAGAAATT--AATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16900824 61 - 220367699 AGGGATAAAAGTG-ATTAGAGCCTGAACGCAAACTACATTTATCCCATGTCAgaaatt--aata i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82700799 61 + 85787240 AGGGATAAAAGTG-ATTAGAGCCTGAACGCAAACTACATTTATCCCATGTCAGAAATT--AATA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178900700 64 + 195471971 aaagacaagaGTATATTAGACCCTGAACTCAAATCACATTTATTCTGTATTTTAAACTCAAATA i mm10.chr1 I 545 C 0 s canFam3.chr7 36490559 60 + 80974532 -AGGATGTCAGTG-ATTTGGTTCTGAACTCAAGCCACATTAACACCACGTAAGAAATG--AATA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14419723 2 - 49578535 I e panTro4.chr1 225124003 408 + 228333871 M a score=8956.000000 s hg38.chr1_KI270759v1_alt 366385 3 + 425601 GCT s panTro4.chr1 225124416 3 + 228333871 GCT i panTro4.chr1 M 408 C 0 s ponAbe2.chr1 226495602 3 - 229942017 GCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140382928 3 - 143122389 GCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17086945 3 - 229590362 GCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223851397 3 - 227556264 GCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16900885 3 - 220367699 gcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82700860 3 + 85787240 GCC i chlSab2.chr25 C 0 C 0 s mm10.chr1 178900764 3 + 195471971 ACT i mm10.chr1 C 0 I 92 s canFam3.chr7 36490619 3 + 80974532 GCC i canFam3.chr7 C 0 I 6 e calJac3.chr19 14419723 2 - 49578535 I a score=53691.000000 s hg38.chr1_KI270759v1_alt 366388 20 + 425601 TATCAAACGTACCAACTTAA s panTro4.chr1 225124419 20 + 228333871 TATCAAACGTACCAACTTAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226495605 20 - 229942017 TATCAAACTTACCAACTTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140382931 20 - 143122389 TATCAAACTTACCAACTTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17086948 20 - 229590362 TATCAAGCTTACCAACTTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223851400 20 - 227556264 TATCAAGCTTACCAACTTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16900888 20 - 220367699 tatcaagcTTACCAACTTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82700863 20 + 85787240 TCTCAAGCTTACCAACTTAA i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36490628 20 + 80974532 GATTAGATGTATCAACTTAA i canFam3.chr7 I 6 C 0 e mm10.chr1 178900767 92 + 195471971 I e calJac3.chr19 14419723 2 - 49578535 I a score=942372.000000 s hg38.chr1_KI270759v1_alt 366408 326 + 425601 AAGATGCAAGAATTGTGCAACAATAG-CTACCTTC-TTTTCAAACAAAATAAACATC-ACTAAAAA----ACTCTAAT-------CTTAATTCTTTTTCAAGAAATGGATAATTCCTCCACATCATTCTCCTTTAAAATTTTGTAGATTCTCCCTTAAGTTACTTAAT-GTATGAGTTGTGGCTTCTGTGTAACGTCTTTTCTCAGGCTTGTATTGGTAATGGAAAGCATTCTTCAGCTTAATTTCCTTTTAATTCCTTCCAATTACTATGCACTGTTCTT-TGTGCCAAGTGCCAGTCCAGTTATCCAGTTGGTGCATTTTGTGAGAACTGTAGGATCATG s panTro4.chr1 225124439 326 + 228333871 AAGATGCAAGAATTGTGCAACATCAG-TTACGTTC-TTTTCAAACAAAATAAACATC-ACTAAAAA----ACTCTAAT-------CTTAATTCTTTTTCAAGAAATGGATAATTCCTCCACATCATTCTCCTTTAAAATTTTGTAGATTCTCCCTTAAGTTACTTAAT-GTATGAGTTGTGGCTTCTGTGTAACGTCTTTTCTCAGACTTGTATTGGTAATGGAAAGCATTCTTCGGCTTAATTTCCTTTTAATTCCTTCCAATTACTATGCACTGTTCTT-TGTGCCAAGTGCCAGTCCAGTTATCCAGTTGGTGCATTTTGTGAAAACTGTAGGATCATG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226495625 329 - 229942017 AAGATGCAAGAATTGTGCAACAATAG-CTACCTTC-TTTTCAAACAAAATAAACATC-ACTAAAAA----ACTCTAAT---CTTCCTTAATTATTTTTCAAGAAATGGATAATTCCTTCACGTCATTCTCCTTTAAAATTTTGTAGATTCTCCCTTAAGTTAC-TAAT-GTATGAGTTGTGGCTTCTGTGTAATGTCTTTTCTCAGACTTGTATTGGTAATGGAAAGCATTCTTCAACTTAATTTCCTTTTAATTCCTTCCAATTACTATGCACTGTTCTT-TGTGCCAAGTGCCAATCCAGTTATCCAGTTGGTGCATTTTGTGAAAACTGTAGGATCATG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140382951 329 - 143122389 AAGATTCAAGAATTGTGCAACAATAG-CTACCTTC-TTTTCAAACAAAATAAACATC-ACTAAAAA----ACTCTAAT---CCTTCTTAATTCTTTTTCAAGAAATGGATAATTCCTTCACATCATTCTCCTTTAAAATTTTGTAGTTTCTCCCTTAAGTTACTTAAT-GTATGAGTTGTGGCTTCTATGTAACATCTTTTCTCAGACGTGTATTGGTAATGGAAAGCATTCTTCAACTTAATTTCCGTTTAATTCCTTCCAATTACTATG-ACTGTTCTT-TGTGCCAAGTGCCAATCCAGTTATCCAGTTGGTGCATTTTGTGAAAACTGTAGGATCATG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17086968 323 - 229590362 AAGATGCAAGAATTGTGCAACAATAG-CTACCTTTTTTTTCAAATAAAATAAACATC-ACTAAAAA----ACTCTAAT---CTTTCTTAATTCTTTTTCAAGAAATGCATAATGCCTTCACATCATTCTTCTTTAAAATTTTGTTGATTCTCCCTTAAGTTATTTAAC-GTATGAGTTGTGGCTTCTGTGTAACATCTTTTCTCAGAGTTGTGTTGGTGATGGAAAGCATTCTTCAACTTAATTTCCTTTTAATTCCTCCCAATTACTATGCACTGTTCTT-TGTGCCGAGTGCCA--------ATCCAGTTGGTGCATTTTGTGAAAACTGTAGGATCGTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223851420 323 - 227556264 AAGATGCAAGAATTGTGCAACAATAG-CTACCTTTTTTTTCAAATAAAATAAACATC-ACTAAAAA----ACTCTAAT---CTTTCTTAATTCTTTTTCAAGAAATGCATAATGCCTTCACATCATTCTTCTTTAAAATTTTGTTGATTCTCCCTTAAGTTATTTAAC-GTATGAGTTGTGGCTTCTGTGTAACATCTTTTCTCAGAGTTGTGTTGGTGATGGAAAGCATTCTTCAACTTAATTTCCTTTTAATTCCTCCCAATTACTATGCACTGTTCTT-TGTGCCGAGTGCCA--------ATCCAGTTGGTGCATTTTGTGAAAACTGTAGGATCGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16900908 323 - 220367699 AAGATGCAAGAATTGTGCAACAATAG-CTaccttttttttcaaataaaataaacatc-actAAAAA----ACTCTAat---ctttcttaattctttttcaaGAAATGCATAATGCCTTCACatcattcttctttaaaattttgttgattCTCCCTTAAGTTATTTAAC-GTATGAGTTGTGGCTTCTGTGTAACATCTTTTCTCAGAGTTGTGTTGCTGATGGAAAGCATTCTTCAacttaatttccttttaattcctCCCAATTACTATGCACTGTTCTT-TGTGCCGAGTGCCA--------ATTCAGTTGGTGCATTTTGTGAAAACTGTAGGATCGTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82700883 323 + 85787240 AAGATGCAAGAATTGTGCAACAATAG-CTACTTTCTTTTTCAAATAAAATAAACATC-ACTAAAAA----ACTCTAAT---CTTTCTTAATTCTTTTTCAAGAAATGCATAATGCCTTCACATCATTCTTCTTTAAAATTTTGTCGATTCTCCCTTCAGTTATTTAAC-GTATGAGTTGTGGCTTCTGTGTAACATCTTTTCTCAGAGTTGTGTTGGTGATGGAAAGCATTCTTCAACTTAATTTCCTTTTAATTCCTCCCAATTACTATGCACTGTTCTT-TGTGCCGAGCGCCA--------ATCCAGTTGGTGCATTTTGTGAAAACTGTAGGATCGTG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178900859 317 + 195471971 AAAATATAAAGCCCCTGCAATGGTAGCCTGTCTTA-TGACCAAGCAAAATTAGAACC-ACAGGGAAATGCACTCTTAT-AACACAATACATTTTTTTT-----AATGTCTCATTCCTTCCTGT-ATCCCTCATTAAAGTTTCTGAGGCACTCTCTGAAGTTATTAAACTGTGTGAATGGTCGCCTCTGTGTTCCATCTTTCCTCACACTTGTACCTGTGGTGGAAACTAGTCTTCAACCCAGTTTCCTTTCAATTCCCTCCAATTACTGAGGCCTGTCCTT-CAT----AGCAGCA-----------CACTTGGCCCATCATCTGAGAACCCTGGCATCTTG i mm10.chr1 I 92 I 772 s canFam3.chr7 36490648 316 + 80974532 AAGATTTAACTGTTGTGCCACAATAG----CCTTT-TTTTCACACAAAATCATTATCAACTGGAAA----ACTTGAATCCGCTTCCTTAGTTCTTTTTTGAGAAATATGCCATTTCTTCATGTCATTCCCCATTAAAATTCTGCAGACTCTGTCTCAAATTATTAAAT-GTTTACATTGTGGCCTCTGTGTAACATCATTTTTCAGACATGTGCCAGTAATGGAAATCATTCTCCAACTCAATTTCCTTTTAATTCCTTCCAATTACTATACACTGCCCTTCTGTGCCAAGAGCCA--------ATCCCGGTGGTACATTTTGTGAAGACCATG-------- i canFam3.chr7 C 0 C 0 e calJac3.chr19 14419723 2 - 49578535 I a score=41058.000000 s hg38.chr1_KI270759v1_alt 366734 15 + 425601 GAGATCATGtttctt s panTro4.chr1 225124765 15 + 228333871 GAGATCATGtttctt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226495954 15 - 229942017 GAGATCATGtttctt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140383280 15 - 143122389 GAGATCATGtttctt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17087291 13 - 229590362 --GATCATGtttctt i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223851743 13 - 227556264 --GATCATGtttctt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16901231 13 - 220367699 --gatcatgtttctt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82701206 13 + 85787240 --GATCATGtttctt i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36490964 14 + 80974532 -GAATCATGTTTCTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178901176 772 + 195471971 I e calJac3.chr19 14419723 2 - 49578535 I a score=69749.000000 s hg38.chr1_KI270759v1_alt 366749 56 + 425601 ttctt-ttcttttcttttctttttttgagacagcgtcttgctctgtcaccaggctgg s panTro4.chr1 225124780 54 + 228333871 ttctt-ttcttttcttttcttttt--gagacagcatcttgctctgtcaccaggctgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226495969 49 - 229942017 ttctt-tttttttttttct-------gagacagcgtcttgctctgtcgccaggctgg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140383295 39 - 143122389 ttttt-ttt-----------------gagacagcgtcttgctctgtcgccaggctgg i nomLeu3.chr5 C 0 I 3779 s rheMac3.chr1 17087304 42 - 229590362 tc----------tttttttttttt--gag---aagtctttctctgttgccaggatcg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223851756 54 - 227556264 tcttt-tttttttttttttttttt--gagacaaagtcttgctctgttgccaggatag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16901244 55 - 220367699 tctttctttttttttttttttttt--gagacaaagtcttgctctgttgccaggatgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82701219 52 + 85787240 tct---tttttttttttttttttt--gagacaaagtcttgctctgttgccaggatgg i chlSab2.chr25 C 0 C 0 e mm10.chr1 178901176 772 + 195471971 I e canFam3.chr7 36490978 0 + 80974532 C e calJac3.chr19 14419723 2 - 49578535 I a score=472953.000000 s hg38.chr1_KI270759v1_alt 366805 265 + 425601 agtgcagtggcacaatcttggcttaccgcaacctctgcttcctgggttcaagtgattcttctgcctcagcctcccaagtagctgggattacaggcacgcaccaccatgcctggctaattttttgtagttttagtagagatggggtttcgccatgttggccaggctggtcgcgaactcccgacctcaggtgatccgcctgcctcagatcacccaaagtgctgggattacaggcatgagccactgtgcctggccAGGATCATGTTTC s panTro4.chr1 225124834 265 + 228333871 agtgcagtggcacaatcttggcttaccgcaacctctgcctcctgggttcaagtgattcttctgcctcagcctcccaagtagctgggattacaggcacgcaccaccatgcctggctaattttttgtagttttagtagagatggggtttcgctatgttggccaggctggttgcgaactcccgacctcaggtgatccgcctgcctcagatcacccaaagtgctgggattacaggcatgagccactgtgcctggccAAGATCATGTTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226496018 263 - 229942017 agtgcagtggcacaatctcggctcaccacaacctctgcctcccgggttcaagtgattgttctgcctcagcct-ccaagtagctgggattgcagacatgcaccaccacgctcggctaatttcttgtag-tttagtagagatggggttttgccatgttggccaggctggtcacgaactcctgacctcaggtgatctgcctgcctcagatcacccaaagtgctggggttacaggcatgagccaccgtacctggccAGGATCATGTTTC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17087346 265 - 229590362 agtgcagtggcacaatctgggctcactgcaacctccgcctcccaggtttgagcgattctcctgcctcagcctctcaagtagctgggattataggcatgcaccaccacgcccggctaattttttgtggttttagtagagatggggtttcgccatgttggtcaggctgctcgcgaactcctgacctcaggtgacccgcccgcctcggatcccccaaagtgctgggattactggcgtgagccactgtgcctggccAGGATCACGTTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223851810 265 - 227556264 agtgcagtggcacaatcttggctcactgcaacctctgcctcccaggtttgagcgattcttctgcctcagcctctcaagtagctgggattacaggcatgcaccaccacacccggctaattttttgtggttttagtagagatggggtttcgccatgttggtcaggctgctcgcgaactcctgacctcaggtgacccgcccgcctcggatcacccaaagtgctgggattacaggcgtgagccactgtgcctggccAGGATCATGTTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16901299 264 - 220367699 agtgcagtggcacaatcttggctcactgcaacctctgcctcccaggtttgagcgattctcctgcctcagcctctcaagtagctgggattacaggcatgcactaccaca-ccggctaattttttgtggttttagtagagatggggtttcgccatgttggtcaggctgctcgcgaactcctgacctcaggtgacccgcccgcctcggatcacccaaagtgctgggattacaggcgtgagccactgtgcctggccaggatcaTGTTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82701271 265 + 85787240 agtgcagtggcacaatcttggctcactgcaacctctgcctcccaggtttgagcgattctcctgcctcagcctctcaagtagctgggattacaggcatgcaccaccacacccggctaattttttgtggttttagtagagatggggtttcgccatgttggtcaggctgctcgcgaactcctgacctcaggtgacccgcccgcctcggatcacccaaagtgctgggattacaggcgtgagccactgtgcctggccAGGATCATGTTTC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178901176 772 + 195471971 I e canFam3.chr7 36490978 0 + 80974532 C e calJac3.chr19 14419723 2 - 49578535 I e nomLeu3.chr5 140383334 3779 - 143122389 I a score=5096.000000 s hg38.chr1_KI270759v1_alt 367070 2 + 425601 TT s panTro4.chr1 225125099 2 + 228333871 TT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226496281 2 - 229942017 TT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140387113 2 - 143122389 TT i nomLeu3.chr5 I 3779 C 0 s rheMac3.chr1 17087611 2 - 229590362 TT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223852075 2 - 227556264 TT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16901563 2 - 220367699 TT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82701536 2 + 85787240 TT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178901176 772 + 195471971 I e canFam3.chr7 36490978 0 + 80974532 C e calJac3.chr19 14419723 2 - 49578535 I a score=1309124.000000 s hg38.chr1_KI270759v1_alt 367072 502 + 425601 TAAACCACACATGATACCCAGAAGGCATCATAATAGAGTTGGCTTCATCATCTTCCTTATCATAGGTTATGCTTGATTTCAAAAGAAATTTGTTCCTCGACAATACACAGAAAATGCACTTAACAATAGCCCCTGAAGTTTTCCCCAGCCAATGACTGGTTAGCAGTCTAATAAGGATCATATTGGACAAGTATCTTTAACACAAAACAGCACAGGGAATCATGGGCCACTCTCATCGTTAGGCTCTCTTCACAGGTATAGCCTAT----GTTAGAAGGCTTCTGAACCACAGATGCT-----aaagaaaaattagtt--aaactgaagactgatgaagtattccctacaaatgaaaaggcaa----tcttatatgaca---aaggacactatcaggaggttgaaaaacaacctatagaatgggagaaaatatttgtaaatcatatgtctat-----gattaatatccagaatatataaagaactcctgtaagtcaacaaccatcacca------cacccagttcacaaat s panTro4.chr1 225125101 502 + 228333871 TAAACCACACATGATACCCAGAAGGCATCATAATAGAGTTGGCTTCATCATCTTCCTTATCATAGGTTATGCTTGATTTTGAAAGAAATTTGTTCCTGGACAATACACAGAAAATGCACTTAACAATAGCCCCTCAAGTTTTCCCCAGCCAATGACTGGTTAGCAGTCTAATAAGGATCACATTGGACAAGTATCTTTAACACAAAACAGCACAGGGAATCTTGGGCCACTCTCATTGTTAGGCTCTCTTCACAGATATAGCCTAT----GTTAGAAGGCTTCTGAACCACAGATGCT-----AAAGAAAAATTACTT--AAATTTAAGACTGATGAAGTATTCCCTAcaaatgaaaaggcaa----tcttatatgaca---aaggacactatcaggaggttgaaaaacaacctatagaatgggagaaaatatttgtaaatcatatgtctat-----gattaatatccagaatatataaagaactcctgtaagtcaacaaacatcacca------cacccagttcacaaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226496283 503 - 229942017 TAAACCACACATGATACCCAGAAGGCATCATAATAGAGTTGGCTTCATCATCTTCCTTATCATAGGTTATGCTTGATTTCAAAAGAAATTTGTTCCTGGACAATACACAGAAAATGCACTTAATAATAGCCCCTCAAGTTTTCCCCAGCCAATGACTGGTTAGCAGTCTAATAAGGATCATATTGGACAGGTATCTTTAACATAAAACAGCACAGGGAATCCTGGGCCACTCTCATCGTTAGGCTCTTTTCACAGGTAAAGCCTAT----GTTAGAAGGCTTCTGAACCACAGATGCT-----AAAGAAAAATTAGTT-AAAATTTAAGACTGATGAAGTATTCCCTACGACTGAAAAGGCAA----TCTTATATGAca---aaggacactatcaggaggttgaaaaacaacctatagaatgggagaaaatatttgtaaatcatatgtctac-----gattaatatccagaatatataaagaactcctgtaagtcaacaaccatcacca------cacccagttcacaaat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140387115 507 - 143122389 TAAACCACACATGATACCCAGAGGGCATCATAGTAGAGTTGACTTCATCATCTTCGTTATCATAGGTTATGCTTGATTTCAAAAGAAATTTATTCCTGGACAATACACAGAAAATGCACTTAACAATAGCCCCTCAAGTTTTCCCCAGCCAATGACTGGTTAGCAGCCTAATAAGGATCATATTGGACAAGTATCTTTAACACAAAACAGCACAGGGAATTCTGGGCCACTCTCATTGTTAGGCTTTCTCCACAGGTAAAGCATATGTTGGTTAGAAGGCGTCTGAACCACAGATGCC-----AAAGAAAAATTAGTT-CAAATTTAAGACTGATGAAGTATTCCCTACCAATGAAAAGTTAC----TCTTACATGAca---aaggacaccatcaggatgttgaacaacaacctatagaatgggagaaaacattcgtaaatcatatgtctac-----aattaacatccagaatatataaagaactcctgtaagttgacaaccatcacca------cacccagttcacaaat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17087613 504 - 229590362 TAAACCACACGTGATACCCAGAAGGCATCATAATAGAGTTGGCTTCATCATCTTCCTTATCATAGGTTATGCTTGGTTTCAAAAGAAATTGATTCCTCGACAATACTCAGAAAATGCACTTAACAATCGCCCCTCAAGTTTTCCCCCGCAGATGAGTGGTTAGC-GTCTAGTAAGGACCATATTGGACAAGTATCTTTAACACAAAACAGCACAGGGAATCCTGGGCCACTCTCATTGTTAGGCTCTCTTCACAGGTAAAGCATAT----GTTAGaaggcttccaaaccacagatgcc---aaaaaaaaaaatcagtt-aaaatttaagactgatgaagtattgcctacaaatgaaaaggcac----tcttgtacgtca---aaggacactatcaggagattgagaaacaacctatagaatgggagaaaatatttgtaactcatatgtctac-----gattaatatccagaatatataaagaactcctgtaagtcaacaaccatcacca------cacccagttcacaaat i rheMac3.chr1 C 0 I 313 s macFas5.chr1 223852077 502 - 227556264 TAAACCACACGTGATACCCAGAAGGCATCATAATAGAGTTGGCTTCATCATCTTCCTTATCATAGGTTATGCTTGGTTTCAAAAGAAATTGATTCCTCGACAATACTCAGAAAATGCACTTAACAATCGCCCCTCAAGTTTTCCCCCGCAGATGAGTGGTTAGC-GTCTAGTAAGGACCATATTGGACAAGTATCTTTAACACAAAACAGCACAGGGAATCCTGGGCCACTCTCATTGTTAGGCTCTCTTCACAGGTAAAGCATAT----GTTAGAAggcttccgaaccacagatgcc-----aaaaaaaaatcagtt-aaaatttaagactgatgaagtattgcctgcaaatgaaaaggcac----tcttgtacgtca---aaggacactatcaggagattgagaaacaacctatagaatgggagaaaatatttgtaactcatatgtctac-----gattaatatccagaatatataaagaactcctgtaagtcaacaaccatcacca------cacccagttcacaaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16901565 502 - 220367699 TAAACCACACGTGATACCCAGAAGGCATCATAATAGAGTTGGCTTCATCATCTTCCTTATCATAGGTTATGCTTGATTTCAAAAGACATTGATTCCTCGACAATACTCAGAAAATGCACTTAACAATCGCCCCTCAAGTTTTCCCCAGCAGATGACTGGTTAGC-GTCTAGTAAGGACCATATTGGACAAGTATCTTTAACACAAAACAGCACAGGGAATCCTGGGCCACTCTCATTGTTAGGCTTTCTTCACAGGTAAAGCATAT----GTTAGAAGGCTTCCGAACCACAGATgcc-----aaaaaaaaatcagtt-aaaatttAAGACTGATGAAGTATTGCCTGCAAATGAAAAGGCAT----TCTTGTATGTCA---AAGGACACTATCAGGAGATTGAgaaacaacctatagaatgggagaaaatatttgtaactcaTATGTCTac-----aattaatatccagaatatataaagaactcctgtaAGTCAACAACGATCACCA------CACCCAGTTCACAAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82701538 507 + 85787240 TAAACCACACGTGATACCCAGAAGGCATCATAATAGAGTTGGCTTCATCATCTTCCTTATCATAGGTTATGCTTGATTTCAAAAGAAATTGATTCCTCGACAATACTCAGAAAATGCACTTAACAATCGCCCCTCAAGTTTTCTCCAGCAGATGACTGGTTAAC-GTCTAATAAGGACCATATTGGACAAGCATCTTTAACACAAAACAGCACAGGGAATCCTGGGCCACTCTCATTGTTAGGCTCTCTTCACAGGTAAAGCATAT----GTTAGAAGGCTTCCGAACCACAGATGCAAAAAAAAAAAAAAATCAGTT-AAAATTTAAGACTGATGAAGTATTGCCTACaaatgaaaaggcac----tcttgtacgtca---aaggacactatcaggagattgagaaacaacctatagaatgggagaaaatatttgtaactcatatgtctac-----gattaatatccagaatatataaagaactcctgtaagtcaacaaccatcacca------cacccagttcacaaat i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36490978 487 + 80974532 TAAACCATATATGATA-CCAGAAGGCATTCTGGCAGAGTTGCCCTCATCATC-TCCTGAAAGTTGGTTATACATGATTTCAAAAGAAGTGTATCCCTAGGC----------ACATGTGTTTAACAACGGCCTTTCAAGTTCTCCCCAGCTGGTTCCTGGTTAGC-AAGTAAAGAGAACCACATTGGGCAAGCATCTT---CACAAAATTCCATAGTCAATGTCTGGTCACTCTTATTGGCAGGCCT--ATCACAGGAAAAGCA-AC----TTTGGAAGGTTTTTGAACCATAGATGCC-------ACAAATGTGAGTTAAAAATCTGAGAATATTgaag----------aaatgaagtggcacttcatttgaaatggcattggaggacactatcaagagactgaaatg----ccatggaatgggagaaggtctttgcagatcatttatgtaatatgggattcatacccagtatatataaagaactcctgcaagtcaacaacaatagcaaaaatttaatttgcttcaaaaac i canFam3.chr7 C 0 C 0 e mm10.chr1 178901176 772 + 195471971 I e calJac3.chr19 14419723 2 - 49578535 I a score=915838.000000 s hg38.chr1_KI270759v1_alt 367574 340 + 425601 gggcagaggaatcttatggacatttctccagcggagatatatgcacagccaaggagcacgtgaaaagatactcagcatcattagttgctagagaaatgcaaagcaaaccccaagaaggtaccacttcctagccagcagga-tgtagctattaaaacaacaacagaaaatcagtgttggcaagggtgtggaggaattgcagtccgtgtgcgttgctggtgggaatgta-aaatggcatagtcattgtggaaaggagtgtggcagttcctccaagagtcgcatatagaattgtcacatggtccagcaattccattcctaggt---tacccaaaagaatggaaagcag s panTro4.chr1 225125603 340 + 228333871 gggcagaggaatcttatggacatttctccagcggagatatatgcacagccaaggagcacgtgaaaagatactcagcatcattagttgctagagaaatgcaaagcaaaccccaagaaggtaccacttcctagccagcagga-tgtagctattaaaacaacaacagaaaatcagtgttggcaagggtgtggaggaattgcagtccgtgtgcgttgctggtgggaatgta-aaatggcatagtcattgtggaaaggagtgtagcagttcctccaagagtcgcatacagaattgtcacatggtccagcaattccattcctaggt---tacccaaaagaatggaaagcag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226496786 340 - 229942017 gggcagaggaatcttatggacatttctccaacggagatatatgcacagccaaggagcacgtgaaaagatactcagcatcgttagttgttagagaaatgcaaagcaaaccccaagaaggtaccacttcctagccagcagga-tgtagctattaaaacaacaacagaaaatcagtgttgacaagggtgtggaggaattgcagtccgtgtgcgttgctggtgggaatgta-aaatggcatagtcattgtggaaaggagtttggcagttcctccaagagttacatatagaattgtcacatggtccagcaattccattcctaggt---tacccaaaagaattgaaagcag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140387622 339 - 143122389 gggcagaggaatctgacggacatttctccaacggagatatatgcacagccaaggagcacgtgaaaagatactcagcatcattagttgttagagaaatgcaaagcaaaccccaagaaggtaccacttcctagccagcagga-tgtagctattaaaaccacaacagaaaatcggtgttgacaatggtgtggaggaattgcagtccgtgtgcgttgctggt-ggaatgta-agatggtatagtcattgtggaaaggagtttggcagttcctccaagagttacatatagaattgtcacatagtccagcaattccattcctaggt---tacccaaaagaattgaaagcag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17088430 343 - 229590362 gggcagaggaattttatggacatttctccaatgaaggtatatgcacagccaaggagcatgtgaaaagatattcaacatcattagttgttagagaaatgcaaagcaaaccccaagaaggtaccacttcctatccagtagga-tgtagctattaaaacaacaacaggaaatcagtgttgacaagggtgtggaggaactgcagtccttgtgtgttgccggtgggaatgta-aaatggcatagtcattgtggaaaggagtttggcagttcctcgaaaagttacatatagaattgtcacatggtccagcaattccattcctaggtatgtacccaaaagaactggaagcag i rheMac3.chr1 I 313 C 0 s macFas5.chr1 223852579 343 - 227556264 gggcagaggaattttatggacatttctccaatgaaggtatatgcacagccaaggagcatgtgaaaagatattcaacatcattagttgttagagaaatgcaaagcaaaccccaagaaggtaccacttcctatccagtagga-tgtagctattaaaacaacaacaggaaatcagtgttgacaagggtgtggaggaactgcagtccttgtgtgttgccggtgggaatgta-aaatggcatagtcattgtggaaaggagtttggcagttcctcgaaaagttacatatagaattgtcacatggtccagcaattccattcctaggtatgtacccaaaagaactggaagcag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16902067 343 - 220367699 GGGCAGAGGAATTTTATGGACATTTCTCCGATGAAGGTATATGCACAGCCAAGGAGCatgtgaaaagatattcaacatcattagttattagagaaatgcaaagcaaaccCCAAGAAGGTACCACTTCCTATCCAGTAGGA-TGTAgctattaaaacaacaacaggaAATCAGTGTTGACAAGGGTGTGGAGGAACTGCAGTCCTTGTGTGttgccagtgggaatgta-aaatggcatagtcATTGTGGAAAGGAGTTTGGCAGTTCCTCGAAAAGTTACGCATAGAATTGTCACAtggtccagcaattccattcctaggtatatacccaaaagaactggaAGCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82702045 338 + 85787240 gggcagaggaattttatggacatttctccagtgaaggtatatgcacagccgaggagcatgtgaaaagatattcaacatcattagttgttagagaaatgcaaagcaaaccccaagaaggtaccacttcctatccagtagga-tgtagctattaaaacaacaacaggaaatcagtgttgacaagggtgtggaggaactgcagtccttgtgtgttgcgggtgggaatgta-aa-----atagtcattgtggaaaggagtttggcagttcctcgaaaagttacatatagaattgtcacatgggccagcaattccattcctaggtatatacccaaaagaactggaagcag i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36491465 339 + 80974532 aggcagaggacctgaatagacatttttgcaaagaagacgtacagatggccaacaaacccatgaaaagatgttctgcatcattagccactagagaaatgcaaataaaaccacagtgaaatgccacctcacatccattaggagggctgttattaaggaaaca----gaaataaatcttggcaacaatgtggagaaattggagccctcacacgtggctgatgagactgtagaaattgtacagacaccttggaagatggt-cggcagttcctc-aaatgttaaaaatagaattgctatattatccagtgaatccactcctaggtatatgctcaacagcaatgaaagcag i canFam3.chr7 C 0 I 157 e mm10.chr1 178901176 772 + 195471971 I e calJac3.chr19 14419723 2 - 49578535 I a score=624777.000000 s hg38.chr1_KI270759v1_alt 367914 265 + 425601 gggagctggaggccattatgctaagtgaagtaactcaggaagggaaagccacattcc-tatgttctcaggtataagtgggagctaagctgagggtccacaaagg----cagagtggaggaatggacattggagactccgaaggggaaaggagatggaggattaaaacgctacattttgggtacaacatatactacttcggtgacaggtgcaccacaatctcagacctcaccactatacagttcatccacgtaaccaaaaaccacttggac s panTro4.chr1 225125943 265 + 228333871 gggagctggaggccattatgctaagtgaagtaactcaggaagggaaagccacattcc-tatgttctcaggtataagtgggagctaagctgagggtccacaaagg----cagagtagaggaatggacattggagactccgaaggggaaaggagatggaggattaaaacgctacattttgggtacaatatatactacttcggtgacaggtgcaccacaatctcagacctcaccactatacggttcatccacgtaaccaaaaaccacttggac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226497126 269 - 229942017 gggagctggaggccattatgctaagtgaagtaactcaggaatggaaagccaaattcc-tatgttctcaggtataagtgggagctaagctgatggtccacaaaggcagacagagtagaggaatggacattggagactccgagggggaaaggagatggaggattaaaacgctacattttgggtacaatatatactacttcggtgacaggtgcaccacaatctcagacctcaccactatacagttcatccatgtgaccaaaaaccacttggac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140387961 270 - 143122389 tggagctggaggccattatgctaagtgaagtaattcaggaatggaaagccaaattctgtatgttctcaggtgtaagtgggagctaagctgagggtccacaaaggcagacagagtagagagatggacattggagactctgaaggggaaaggagatggaggatgaaaatgctacactttgggtacaatatatactgcttcggtgacaggtgcaccacagtctcagacctcaccactatacagttcatccttgtaaccaaaaaccacttggac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17088773 270 - 229590362 tggagctgcaggccattatgctaagtgaagtaattcaggaatggaaagccaaattccgtatgttctcaggtgtgagtgggagctaagctgagagtccacaggggcagacagagtagaggaatggacattggagactcaggaggggaaaaggaatgaaggattaaaacgctaccttctgggtacaatatatactacttgggtgacaggtgcactgcagtctcagacctcaccactatacagttcatccacgtaaccaaaaaccacttggac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223852922 269 - 227556264 tggagctgcaggccattatgctaagtgaagtaattcaggaatggaaagccaaattccgtatgttctcaggtgtgagtgggagctaagctgagagtccacaggggcagacagagtagaggagtggacattggagactcaggaggggaagaggaatgaaggattaaaacgctaccttctgggtacaatatatactactt-ggtgacaggtgcactgcagtctcagacctcaccactatacagttcatccacgtaaccaaaaaccacttggac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16902410 270 - 220367699 TGGAGCTGcaggccattatgctaagtgaagtaattcaggaatggaaagccaaattCCGTATGTTCTCAGGTGTGAGTGGGAGCTAAGCTGAGAGTCCACAGAGGCAGACAGAGTAGAggaatggacattggagactcaggaGGGGAAAAGGAATGAAGGATTAAAACGCTACCTTCTGGGTACAATATATactacttgggtgacaggtgcactgcAGTCTCAGACCTCACCACTATACAGTTCATCCacataaccaaaaaccacttggaC i papAnu2.chr1 C 0 M 518 s chlSab2.chr25 82702383 270 + 85787240 tggagctgcaggccattatgctaagtgaagtaattcaggaatggaaagccaaattccgtatgttctcaggtgtgagtgggagctaagctgagagtccacagaggcagacagagtagaggaatggacattggagactcaggaggggaaaaggaatgaaggatgaaaatgctaccttctgggtacaatatatactacttgggtgacaggtgcactgcagtctcagacctcaccactatacagttcatccacgtaaccaaaaaccacttgggc i chlSab2.chr25 C 0 C 0 e mm10.chr1 178901176 772 + 195471971 I e canFam3.chr7 36491804 157 + 80974532 I e calJac3.chr19 14419723 2 - 49578535 I a score=624761.000000 s hg38.chr1_KI270759v1_alt 368179 412 + 425601 ccctaaagctattaaataaaaTAAATAAATATAAACATTCAGTAACATTATCTTTAGAAGAACACTTTTTAATAAACCTGGGCATGAAG-AAAAAAGGCTGAATAATATTCCATCGTATGCGTGTGTATATCCatatatatatatatatatat-atatatGCACACACACACACAATGTATATGTCTAGTGTTACCAACTTAGTTTCCTTTCCTTCAATATTAAACGTCTCATATTTCCCccagactttttgagagatagttgagaaataaagctgtgtaagtttagagtgtagtatgtgatgatttgatatatattgtgaaattattaacacaagttaggtgacacacctgtcacctgtcctagttatcatttttttttt---gtattgtagtgaaaTAAATGTCTCATTT---AAAAA s panTro4.chr1 225126208 402 + 228333871 ccctaaagctactaaataaaataaATAAATATAAACATTCAGTAACATTATCTTTAGAAGAACACATTTTAATAAACTTGGGCATGAAG-AAAAAAGGCTGAATAATATTCCATCGTATGCGTGTGTATATCCATATATATATATA---------------CGCACACACACACAATGTATATGTCTAGTGTTACCAACTTAGTTTCCTTTCCTTCAATATTAAACGTCTCATATTTCCAccagactttttgagagatagttgagaaataaagctatgtaagtttagagtgtagtatgtgatgatttgatatatattgtgaaattattaacacaagttaggtgacacacctgtcacctgtcctagttatcgtttttttTTTTTTGTATTGTAGTGAAATAAATGTCTCATTT--GAAAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226497395 409 - 229942017 ccctaaagctattaaataaaaTAAATAAATATAAACATTCAGTAACATTATCTTTAGAACAACACTTTTTAATAAACTTGGGCATGAAG-AAAAAAGGCTG---AATATTCCATCGtatgtgtgtgtatatccatatatatgtgtatatatataATATACACGCACACACACACAATGTATATGTCTAGTGTCACCAACTTAGTTTCCTTTCCTTCAATATTAAATGTCTCATATTTCCCccagactttttgagagatagttgagaaataaagttgtgtaagtttagagtgtagtatgtgatgatttgatatatattgtgaaatgattaacgcaagtttggtgacacacctgtcacctgtcctaattatc----ttttttt---gtattgtagtgaaaTAAATATCTCATTTAAAAAAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140388231 402 - 143122389 ccctaaagctattaaataaaatagataaatataaaaattctgtaacattatctttagaagagcactttttaataAACTTGGGCATGAAGAAAAAAAGGCTGAATAATATTCCATCGTACGTGTGTGTATATCCGTATATATATATA-----------------TGCACACCCACAGTGTAGATGTCTAGTGTCACCAACTTAGTTTTCTTTCCTTCAATATTAAATGTCTCATATTTCCCccagactttttgagagatagtggagaaataaagttgtgtaagtttagagtgtagtatgtgatgatttgatatatattgtgaaatgattaacacaagttaggtgacacacctgtcacctgtcctagttatcttttttttTTT-TTGTATTGTAGTGAAATTAATCTCTCATTTAAAAAAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17089043 385 - 229590362 ccctaaagctattaaataaaaTAAATAAACACAAAAATTCAGTAAC--TATTTCTAGAAGAATACTTTTTAATAAACTTGGGCATGAAGAAAAAAAGGCTGAATAATATTCCACCGTATGTGTGTGTATATCCATATATATGTGCA-------------------CACACACACAATGTATATGTCTAATGTCACCAACTTAGTTTCCTTTCCTTCAATATTAAATGTCTCATAtttcccatggactttttgagagctagttgag----aaagttgtgtaagtttacagtgtattatgtgatgatttgatacatattgtgaaatgattaacac--gttaggtgacacacctgttatctgtcctagttatc---cttttttt---gtattgtagtgaaaTAAATGTCTCATTA--AAAAAA i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223853191 384 - 227556264 ccccaaagctattaaataaaataaATAAACACAAAAATTCAGTAAC--TATCTCTAGAAGAACACTTTTTAATAAACTTGGGCATGAAGAAAAAAAGGCTGAATAATATTCCACCGTATGTGTGTGTATATCCATATATATGTGCA-------------------CACACACACAATGTATATGTCTAATGTCACCAACTTAGTTTCCTTTCCTTCAATATTAAATGTCTCATATTTCCCCTGGACTttttgagagctagttgag----aaagttgtgtaagtttacagtgtattatgtgatgatttgatacatattgtgaaatgattaacac--gttaggtgacacacctgttatctgtcctagttatc---cttttttt---gtattgtagtaaaataAATGTCTCATT---AAAAAA i macFas5.chr1 C 0 I 1 s chlSab2.chr25 82702653 382 + 85787240 ccctaaagctattaaataaaataaATAAACACAAAAATTCAGTAAC--TATCTCTAGAAGAACACTTTTTAATAAACTTGGGCATGAAGAAAAAAATGCTGAATAATATTCCACCGTA--TGTGTGTATATCCATATATATGTGTG-------------------CACACACACAATGTATATGTCTAATGTCACCAACTTAGTTTCCTTTCCTTCAATATTAAATGTCTCATATTTCCCCTGGActttttgagagctagttgag----aaagttgtgtaagtttacagtgtattatgtgatgatttgatatatattgtgaaatgattaacac--gttaggtgacatacctgttacctgtcctagttatc---cttttttt---gtattgtagtgaaaTAAATGTCTCATT---AAAAAA i chlSab2.chr25 C 0 I 6 e mm10.chr1 178901176 772 + 195471971 I e canFam3.chr7 36491804 157 + 80974532 I e calJac3.chr19 14419723 2 - 49578535 I e papAnu2.chr1 16902680 518 - 220367699 M a score=1202595.000000 s hg38.chr1_KI270759v1_alt 368591 520 + 425601 aaaagaattgaaagcaggaaatgaaacagatacttgaataccaatgctcatagtagcattaagcataatagccaagaggtaggaacaacccaattgttcatccacaaatgaggagagaaaatgtggtatgtaaatataatggaatatacgtttcatggaaaagaatgtatctttcaatttttaatttttgtgggtacatagtaggtgaatatatctatgggatccatgagatgttgggatacagacatgcaatgtgaaataagcacgtcatggagaatgggg-----------------------------------------------------------------------tatccatcccctcaagcatttatcctttgagttacaaacaattcaattacactcttttaggtacttaaaaacgtacaattaagttgttatagtcaccctgttgtactttcaaatactagatcttattctttcaaaaattggttgaacctattaaccatccccacatcccccatactctcccaatacctttcccagcctctggtaaccatccttctactctctatgcccatgagttcaa s panTro4.chr1 225126610 520 + 228333871 aaaagaattgaaagcaggaaatgaaacagatacttgtacaccagtgctcatagtagcattaagtataatagccaagaggtaggaacaacccaattgttcatccacaaatgaggagagaaaatgtggtatgtaaatataatggaatatatatttcattgaaaagaatgtatctttcaatttttaatttttgtgggtacatagtaggtgaatatatttatgggatccatgagatgttgggatacagacatgcaatgtgaaataagcatgtcatggagaatgggg-----------------------------------------------------------------------tatccatcccctcaagcatttatcctttgagttacaaacaattcaattacactcttttagttacttaaaaacgtacaattaagttgttatagtcaccctgttgtactttcaaatacgagatcttattctttcaaaaattggttgaacctattaaccatccccacatcccccatactctcccaatacctttctcagcctctggtaaccatccttctactttctatgcccacgagttcaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226497804 520 - 229942017 aaaagaattgaaagcaggaaatgaagaagatacttgtataccagtgctcacagtagcattaatcataatagccaagaggtagggacaacccaattgttcatccacaaatgagtagataaaatgtggtatgtaaatataatggaatatatatttcattgaaaagaatgtatcttttaatttttaatttttgtgggtacatagtaggtgaatatatttatggggtccatgagatgttgggatacagacatgcaatgtgaaataagcacatcatggagaatgggg-----------------------------------------------------------------------tatccatcccctcaggcatttatccttcgagttacaaacaattcaattacactcttttagttacttaaaaacgtacaattaagttgttatagtcaccctgttgtacttccaaatactacatcttattctttcaaaaattggttgaacctattaaccagccccacatcccccatactctcccaatacctttcccagcctctggtaaccatccttctactctctatacccatgagttcaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140388633 520 - 143122389 Caaagaattgaaagcaggaagtgaaacagatacttgtataccagtgctcatagtagcattcatcgtaatagccaagaggtaggaacaacccaattgttcatccacaaataagtagataaaatgtggtatgtaaatataatggaatatatatctcattgaaaagaatgtatcttttaatttttaatttttgtgggtacatagtaggtgaatatatttatggggtccatgagatgttgggatacagacatgcaatgtgaaataagcatgtcatggagaatgggg-----------------------------------------------------------------------tatccatcccctcaagcatttatcctttaagttacaaacaattcaattacgctcttttagttaattaaaaacgtacaattaagttgttatagtcaccctgttgtactttcaaatactagatcttattctttcaaaaatttgttgaacctattaaccatccccacatcccccatactctcccaatacctttcccagcctctggtaaccatccttctactctctatgcccatgaattcaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17089429 591 - 229590362 aaaagaattgaaagcaggaagtgaaacagatacctgtataccagtgctcctagtagcattaatcataatagccaagaggtaggaacagcctaattgttcatccacagatgagtagataatttgtggtatgtacatacagtggaatatatatttcattgaaaagaatgtatctttttatCtttaacttttgtgggtacataataggtgaatatatgtatggggtccatgagatgtttggatgcaggcatgcaatgtgaaataagcacaccagggagaatggagtatccttcccctcaagcacttgtcctttgagttacaaacaatttagttacactcttttagttacttaaaaatTtccttcccctcaagcacttatcctttgagttacaaacaattcagttacactcttttagttacttaaaaatgtacaattaagttattatagtcactctgttgtactttcaaatacgagatctcattctttcaaaaactggttgaacctattaaccatccccacatcccccatactcttccactacctttcccagcctctggtaaccatccttctactctccagacccatgagttcca i rheMac3.chr1 I 1 I 124 s macFas5.chr1 223853576 520 - 227556264 AAaagaattgaaagcaggaagtgaaacagatacttgtataccagtgctcctagtagcattaatcataatagccaagaggtaggaacagcctaattgttcatccacagatgagtacataatttgtggtatgtacatacagtggaatatatatttcattgaaaagaatgTATCTTTTTATCtttaacttttgtgggtacataataggtgaatatatgtatggggtccatgagatgtttggatgcaggcatgcaatgtgaaataagcacaccagggagaatggag-----------------------------------------------------------------------tttccttcccctcaagcacttatcctttgagttacaaacaattcagttacactcttttagttacttaaaaatgtacaattaagttattatagtcactctgttgtactttcaaatactagatctcattctttcaaaaactggttgaacctattaaccatccccacatcccccatactcttccactacctttcccagcctctggtcaccatccttctactctccagacccatgagttcca i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16903198 520 - 220367699 aaaaaaattgaaagcaggaagTGAAACAGATACTTGTATACCAGTGCTCCTAGTAGCATTAAtcataatagccaagaggtaGGAACAGCCTAATTGTTCATCCACAGATGAGTAGATAATTTGTGGTATGTACGTACAGTGGAATATATATTTCATTGAAAAGAAtgtatctttttatctttaacttttgtgggtacatagtaggtgaaTATATGTATGGGGTCCATGAGATGTTTGgatgcaggcatgcaatgtgaaataagcacaccAGGGAGAATGGAG-----------------------------------------------------------------------TATCCTTCCCCTCAAGCACTtgtcctttgagttacaaacaattcagttacactcttttagttacttaaaaatgtacaattaagttattatagtcactctgttgtacTTTCAAATACTAGATCTCATTCTTTCAAAAACTGGTTGAacctattaaccatccccacaTCCCCCATACTCTtccactacctttcccagcctctggtaaccatccttctactctccagACCCATGAGTTCCA i papAnu2.chr1 M 518 C 0 s chlSab2.chr25 82703041 517 + 85787240 aaaagaattgaaagcaggaagtgaaacagatacttgtataccagtgctcctagtagcattaatcataatagccaagaggtaggaacagcctaattgttcatccacagatgagtagataatttgtggtatgtacatacagtggaatatatatttcattgaaaagaatgtatctttttatctttaacttttgtgggtacatagtaggtgaatatatgtatggggtccatgagatgtttggatgcaggcatgcaatgtgaaataagcacaccagggagaatggag-----------------------------------------------------------------------tatcctccccctcaagcacttatcctttgagttacaaacaattcagttacactcttttagttacttaaaaatgtacaattaag---ttatagtcactctgttgtactttcaaatactagatctcattctttcaaaaactggttgaacctattaaccatccccacatcccccatactcttccactacctttcccagcctctggtaaccttccttctactctccagacccatgagttcca i chlSab2.chr25 I 6 C 0 e mm10.chr1 178901176 772 + 195471971 I e canFam3.chr7 36491804 157 + 80974532 I e calJac3.chr19 14419723 2 - 49578535 I a score=1320050.000000 s hg38.chr1_KI270759v1_alt 369111 555 + 425601 ttgctttgatttttaggtctcacaaacaagtgagaacatgtgatgtttgtctttctgttcctggcttatttcacaaaatgatctccatttcc---atccatgatgttgcaaacaacaggatctcattcttttccatggctgaatagtactccattgtgtatatataccacattttctttatccattcacctgttgatggacatttaggttgcttccaaatctaatggaatatattattcactcataaaaagtgtgaaattctgatacatgctgttaatataacacggatgtaccttgcaagcatgttgagtaacataagccacaccccaaaggacaaatattgtatgattccacttatacaaggtacctggcacaggcaaattcatagagacacaaagtagaatggtggttaccgggggccgggggagtagggagtggggagttgttacttaatgggtagagtttgtttgtttgggaaggttctggagataaaggatgtgatggttgcacaacaatgtgaacgggcgcaatgccactaaactgtgcgcttagttgcaa s panTro4.chr1 225127130 555 + 228333871 ttgctttgatttttaggtctcacaaacaagtgagaacatgtgatgtttgtctttctgtgcctggcttatttcacaaaatgatctccatttcc---atccatgatgttgcaaacaacaggatctcattcttttccatggctgaatagtactccattgtgtatatgtaccacattttctttatccattcacctgttgatggacatttaggttgcttccaaatctaatggaatatattattcactcataaaaagtgtgaaattctgatacatgctgttaatataacatggatgtaccttgcaagcatgttgagtaacataagccacaccccaaaggacaaatattgtatgattccacttatacaaggtacctggcacaggcaaattcatagagacacaaagtagaatggtggttaccgggggccgggggagtagggagtggggagttgttacttaatgggtagagtttgtttgtttgggaaggttctggagataaaggatgtgatggttgcacaacagtgtgaacgggcgcaatgccactaaactgtgcacttagttgcaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226498324 552 - 229942017 ttgctttgatttttaggtctcacaaacaagtgagaacatgtgatgtttgtctttctgtgcctggcttatttcacaaaatgatctccatttcc---atccatgatgttgcaaacaacaggatctcattctttttcatggctgaatagtactccattgtgtatatgtaccacattttctttatccattcacctgttgatggaaatttaggttgcttccaaatctaatggaatatattattcactcataaaaagtgtgaaattctgatacatgctgttaatataacatggatgtaccttgcaagcatgttgagtaacataagccagaccccaaaggacaaatatcgtatgattccacttatacaatgtacatggcacaggcaaattcatagagacacaaagtagaatggtggttaccgggagccgggggagtagggagtggggagttgttacttaatgggtagagtttg-ttgttt-ggaaggttctggagataaatgacatgatggttgcacaacaatgtgaacggccgcaatgccactaaactgtgcacttagaaaca- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140389153 555 - 143122389 ttgctttgatttttaggtctcacaaacaagtgagaacatgtgatgtttgtctttctgtgcctggcttatttcacaaaatgatctccatttcc---atccatggtgttgcaaacaacaggctctcattctttttcatggctgaatagtactccattgtgtagatgtaccacattttctttatccattcacctgttgatggacatttaggttgcttccaaatctaatggaatatattattcactcataaaaagtgtgaaattctgacacatgctgttaatataacatggatgtaccttgcaagcatgttgagtaacataagtcagaccccaaaggacaaatattgtatgattccacttatacaaggtacacggcacaggcaaattcatagagacacaaagtagaatggtggttaccgggggccaggggagtagggagtggggagttgttacttaatgggtagagtttgtttgtttgggaaggttctggagatagatgatgtgatggttgcacaacaatgtgaacgggcacaatgccactaaactgtgcacttagttgtaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17090144 550 - 229590362 ttgcttcgattttcaggtctcacaaacaagtgagaacatgtggtgtttgtctttctgtgcctggcttatttcacgaaatgatctccatttcc---atccatgatgttgcaaacaataggatctcattctttttcatggctgaatagtattccattgtgtatatgtaccacattttcttcatccattcacctgttgatggacatttaggttgcttccaaatcCAACAGAATatattattcactcataaaaagtgtgaaattctgacacatgctgttaatataacgtggatgtaccttgcaagcatgttgagtaacataagccagaccccaaaggacaaatattatatgattccacttacacaaggtacctggcacaggcaaattcatagagacacaaagtagaatggcggttaccaggggccaggggagtagggagtggggaattactgattaatgggtggagtttgtttg----ggaaggttctggagatagatggtgtgatggttgcacagcaatgtgaacgggcgcaatgccactgaactgtgcacttaaaaaca- i rheMac3.chr1 I 124 C 0 s macFas5.chr1 223854096 550 - 227556264 ttgcttcgattttcaggtctcacaaacaagtgagaacatgtggtgtttgtctttctgtgcctggcttatttcacgaaatgatctccatttcc---atccatgatgttgcaaacaataggctctcattctttttcatggctgaatagtattccattgtgtatatgtaccacattttcttcatccattcacctgttgatggacatttaggttgcttccaaatccaacggaatatattattcactcataaaaagtgtgaaattctgacacatgctgttaatataacgtggatgtaccttgcaagcatgttgagtaacataagccagaccccaaaggacaaatattatatgattccacttacacaaggtacctggcacaggcaaattcatagagacacaaagtagaatggcggttaccaggggccaggggagtagggagtggggaattactgattaatgggtggagtttgtttg----ggaaggttctggagatagatggtgtgatggttgcacagcaatgtgaacgggcgcaatgccactgaactgtgcacttaaaaaca- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16903718 553 - 220367699 TTGCTTCGATTTTCAGGTCTCacaaacaagtgagaacatgtggtgtttgtctttctgtgcctggcttatttcacgaaATGATCTCCATTTCCAAAATCCATGATGTTGCAAACAATAGGATcgcattctttttcatggctgaatagtattccattgtgtatatgtaccacattttcttcatccattcacctgttgatggacatttaggttgcttccaaatccaATGGAATATATTATTCACTCATAAAAAGtgtgaaattctgacacatgctgttAATATAACATGGATGTACCTTGCAAGCATGTTGAGTAACATAAGCCAGACcccaaaggacaaatattatatgattccacttatacaagGTACCTGGcacaggcaaattcatagagacacaaagtagaatgGCGGTTACCAGGGGCCAGGGGAGCAGGGAGTGGGGAATTACTGATTAATGGGTAGAATTTGTTTG----GGAAGgttctggagatagatggtgtgatggttgcacagcaatgtgaacaGGCgcaatgccactgaactgtgcacttaaaaaca- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82703558 547 + 85787240 tcgcttcgattttcaggtctcacaaacaagtgagaacgtgtggtgtttgtctttctgtgcctggcttatttcacgaaatgatctccatttcc---atccatgatgttgcaaacaataggatctcattctttttcatggctgaatagtattccattgtgtatatgtaccacattttcttcatccattcacctgttgatggacatttaggttgcctccaaatccaacggaatatattattctctcataaaaagtgtgaaattctgacac--gctgttaatatcacatggatgtaccttgcaagcatgttgagtaacataagccagaccccaaaggacaaatattatgtgattccacttatacaaggtacctggcacaggcaaattcatagagacacacagtagaatggcggtttccaggggccagggg-gtagggagtggggaattactgattaatgggtagagtttgtttg----ggaaggttctggagatagatggtgtgatggttacacagcaatgtgaacgggcgcaatgccactgaactgtgcacttaaaaaca- i chlSab2.chr25 C 0 C 0 e mm10.chr1 178901176 772 + 195471971 I e canFam3.chr7 36491804 157 + 80974532 I e calJac3.chr19 14419723 2 - 49578535 I a score=13292.000000 s hg38.chr1_KI270759v1_alt 369666 6 + 425601 ggttac s panTro4.chr1 225127685 6 + 228333871 ggttac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226498876 5 - 229942017 -gttac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140389708 6 - 143122389 ggttac i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17090694 5 - 229590362 -gttac i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223854646 5 - 227556264 -gttac i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16904271 5 - 220367699 -GTTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82704105 5 + 85787240 -gttac i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36491961 6 + 80974532 gactaa i canFam3.chr7 I 157 C 0 e mm10.chr1 178901176 772 + 195471971 I e calJac3.chr19 14419723 2 - 49578535 I a score=393075.000000 s hg38.chr1_KI270759v1_alt 369672 114 + 425601 aataggacatttta-----tgtatatttcaccacaataaaaaTAGGA-----AAAGGCAGGTGATTTCTAAGGACAC-AAGTCCCTTGGGGTTGCTAGTTCTGTCAGACTTTTCCCCTTGTTTTT s panTro4.chr1 225127691 114 + 228333871 aataggacatttta-----tgtatatttcaccacaataaaaaTAGGA-----AAAGGCAGGTGATTTCTAAGGACAC-AAGTCCCTTGGGGTTGCTAGTTCTGTCAGACTTCTCCCCTTGTTTTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226498881 114 - 229942017 aataggacatttta-----tgtatatttcaccacaataaaaaCAGGA-----AAAGGCAGGTGATTTCTAAGGACAC-AAGTCCCTTGGAGTTGCTAGTTCTGTCAGACTTTTCCCCTTGTTTTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140389714 114 - 143122389 aataggacatttta-----tgtgtatttcaccacaataaaaaTAGGA-----AAAGGCAGGTGATTTCTAAGGACAC-AAGTCCCTTGGAGTTGCTACTTCTGTCAGACTTTTCCCCTTGTTTTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17090699 114 - 229590362 aataggaaattttg-----tgtctatttcaccacaataaaaaTAGGA-----AAAGGCAGCTGATTTCTAAGGACAC-AAGTCCCTTGGAGTTGCTAGTTCTGTCAGACTTTTCCCCTTGTTTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223854651 114 - 227556264 aataggaaattttg-----tgtctatttcaccacaataaaaaTAGGA-----AAAGGCAGCTGATTTCTAAGGACAC-AAGTCCCTTGGAGTTGCTAGTTCTGTCAGACTTTTCCCCTTGTTTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16904276 114 - 220367699 AATAGGAAATTTTA-----TGTCtatttcaccacaataaaaatagga-----aaaggcaGCTGATTTCTAAGGACAC-AAGTCCCTTGGAGTTGCTAGTTCTGTCAGACTTTTCCCCTTGTTTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82704110 114 + 85787240 aataggaaattgta-----tgtctatttcaccacaataaaaaTAGGA-----AAAGGCAGCTGATTTCTAAGGACAC-AAGTCCCTTGGAGTTGCTGGTTCTGTCAGACTTTTCCCCTTGTTTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14419725 113 - 49578535 AATAGGAAATTTTA-----TGCATATTTTACCACAATAAAAATATGA-----AAAGGCAGGTGATTTTCAAGGATAT-GAGTCCCTTGGAGTTGCTAGTTCTGTCCGACTTTT-CCCTTGTTTTT i calJac3.chr19 I 2 C 0 s canFam3.chr7 36491967 125 + 80974532 aatagtaaattttatgttgtgtatattttggtacaataaaaaGAAGAAAAGGAAAGGCAGGTGATTTCCAAGGACACGAAGTCCTTGGGAGTTTCCAGGACTGTCAGACTTTTCTTTTATTTATT i canFam3.chr7 C 0 I 23 e mm10.chr1 178901176 772 + 195471971 I a score=1134424.000000 s hg38.chr1_KI270759v1_alt 369786 440 + 425601 CTGAATGACAAGGATTAGTAGTGGATAATAATGAGTGGATTCATGGATTTGAGCAGGACATGAAAGAATTTCCATAGACAGAGATGAAAGGGCATTTCTGACTTGAAACCTGGGATGAGCACCGATGCAGGAGAGGCACGAAAGCTCACAGCGTGTTCAGGGCGTAGTGAATAGAGGGGTGCGTGCCCCGAGCCTGCAGAGCGGGCAGGGATGTGTAGGAAGGCACCTTCATCCTCCTCACTCAGCCTCCCAGCTCCAGGTCCAAAGCCGCCAAATCATCTTTCTTGTCACCATCACATGATAA-GGGGGAGTCCTTCCAGACTGCCAGTCAATGAAGTAACACACACAGCCACGGTCATGCCAGTCTG-AGCCCATCGGGCGAGCCCTGAGGGGAATAACAGTCTTGGTGGCATTGGGCAAGCCCC-GAGGACTCCATCTCG s panTro4.chr1 225127805 440 + 228333871 CTGAATGACAAGGATTAGTAGTGGATAAGAATGAGTGGATTCATGGATTTGAGCAGGACATGAAAGAATTTCCATAGACAGAGATGAAAGGGCATTTCTGACTTGAAACCTGGGATGAGCACCGATGCAGGAGAGGCACGAAAGCTCACGGCGTGTTCAGGGCATAGTGAATAGAGGGGTGCGTGCCCCGAGCCTGCAGAGCGGGCAGGGTTGTGTAGGAAGGCACCTTCACCCTCCTCACTCAGCCGCCCAGCTCCAGGTCCAAAGCCACCATATCATCTTTCTTGTCACCATCACATGATAA-GGGGGAGTCCTTCCAGACTGCCAGTCAATGAAGTAACACACACAGCCACGGTCATGCCAGTCCG-AGCCCATCGGGCGAGCCCTGAGGGGAATAACAGTCTTGGTGGCACTGGGCAAGTCCC-GAGGACCCCATCTCG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226498995 402 - 229942017 CTGAATGACAAGGATTAGTAGTGGATAATAATGAGTGGATTCATGGAATTGAGCAGGACATGAAAGAATTTCCATAGACAGAAATGAAAGGGCATTTCTGACTTGAAACCTGGGATAAGCACCGATGCAGGAGAGGCACAAAAGCTCACGGCGTGTTCAGGGCATAGTGAATAGAGGGGTGCGTCCCCCGAGCCTGCAGAGCAGGGAGGGATGTGTAGGAAGTCACCTTCATCCTCCTCACTCAGCTGCCCAGCTCCAGGTCCAAAGCCGCCAAATCATCTTTCTTGTCACCATCACTTGATAA-GGGGGAGTCCTTCCCGACTGCCAGTCAATGGAGTAACACATGGAACCACGGTCATGCCAGTCTG-AGCCCATC--------------------------------------GGGCAAGCCCC-GAGGACCCCATCTCG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140389828 389 - 143122389 CTGAATGACAAGGATTATTAGTGGATAATAATGAGTGGATTCATGGATTTGAGCAGAACATGAAAGAATTTCCATAGACAGAGATGAAAGGGCATTTCTGACTTGCAACCTGGGATAAGTACCGATTTAGGAGAGGCACGAAAGCTCACGGCGTGTTCAGGGCGTAGTGAATAGAGGGGTGCGTCCCCTGAGCCTGCAGAGCAGGAAGAGATGTGTAGGAAGGCACCTTCATCCTCCTCACTGAGCCACCCAGCTCCAGGTCCAAAGCCGCCAAATCATCTTTCTTGTCACCATCACATGATAAGGGGGGAGTCCTTCCAGACTGCCAGTCAGTGAAGTAACACATGGAACCACGGTCATGCCAGT-----------------------------------------------------CAAGCCCC-GAGGACCCCAGCTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17090813 403 - 229590362 CTGAATGACAAAGATTATTAGTAGATAATAATCAGTGGATCCATGGATTTGAGCAGGACATGAAAGAATTTCCATAGATAGAGATGAAAGGGCCTTTCTGACTTGAAACCTGGGATAAGCACCGATGCAGGAAAGGCACGAAAGCTCACAGCGTGTTCAGGGCGTGGTGAATAGAGGGGTGTGTGCCCCGAGCCTGCAGAGCAGGGACGGATGTGTAGGAAGGCACCTTCATCCTCCTCACTCAGCCGCCCAGCTCCAGGTCCAAAGTCACCAAATCATCTTTCTTGTCACCATCACCTGATAA-GGGGGAGTCCTTCCAGACTGCCAGTCAATGAAGTAACACATGAAACCACGATCATGCCGGTCTG-AGCCCATC--------------------------------------AGGCAAGCTCCAGGGGGCTCCATCTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223854765 403 - 227556264 CTGAATGACAAAGATTATTAGTGGATAATAATCAGTGGATCCATGGATTTGAGCAGGACATGAAAGAATTTCCATAGATAGAGATGAAAGGGCCTTTCTGACTTGAAACCTGGGATAAGCACCGATGCAGGAAAGGCACGAAAGCTCACAGCGTGTTCAGGGCGTGGTGAATAGAGGGGTGTGTGCCCCGAGCCTGCAGAGCAGGGACGGATGTGTAGGAAGGCACCTTCATCCTCCTCACTCAGCCGCCCAGCTCCAGGTCCAAAGTCACCAAATCATCTTTCTTGTCACCATCACCTGATAA-GGGGGAGTCCTTCCAGACTGCCAGTCAATGAAGTAACACATGAAACCACGATCATGCCGGTCTG-AGCCCATC--------------------------------------AGGCAAGCTCCAGGGGGCCCCATCTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16904390 403 - 220367699 CTGAATGACAAAGATTATTAGTGGATAATAATCAGTGGATCCATGGATTTGAGCAGGACATGAAAGAATTTCCACAGATAGAGATGAAAGGGCCTTTCTGACTTGAAACCTGGGATAAGCACCGATGCAGGAAAGGCATGAAAGCTCACAGCGTGTTCAGGGCGTGGTGAATAGAGGGGTGTGTGCCCCGAGCCTGCAGAGCAGGGAGGGATGTGTAGGAAGGCACCTTCATCCtcctcactcagtcgcccagctCCAGGTCCAAAGTCACCAAATCATCTTTCTTGTCACCATCACCTGATAA-GGGGGAGTCCTTCCAGACTGCCAGTCAATGAAGTAACACATGAAACCACGATCATGCCGGTCTG-AGCCCATC--------------------------------------AGGCAAGCTCCAGGGGGCCCCATCTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82704224 403 + 85787240 CTGAATGACAAAGATTATTAGTGGATAATAATCAGTGGATCCATGGATTTGAGCAGGACATGAAAGAATTTCCATAGATAGAGATGACAGGGCCTTTCTGACTTGAAACCTGGGATAAGCACCGATGCAGGAAAGGCACGAAAGCTCACGGCGTGTTCAGCGCGTGGTGAATAGAGGGGTGTGTGCCCCGAGCCTGCAGAGCAGGGAGGGATGTGTAGGAAGGCACCTTCATCCTCCTCACTCAGCCGCCCAGCTCCAGGTCCAAAGTCACCAAATCATCTTTCTTGTCACCATCACCTGATAA-GGGGGAGTCCTTCCAGACTGCCAGTCAATGAAGTAACACATGAAACCACGATCATGCCGGTCTG-AGCCCATC--------------------------------------AGGCAAGCTCCAGGGGGCCCCATCTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14419838 394 - 49578535 CTCAGTAACAAGGATTATTAGTGGATAATAATGAGTGGATTCATGCATTTGAGCAGGACATGAAAGAATTCCCATGGACAGAGATGAAAGGGCATTTCTGACTTAAAACCCAGGATGCGCACCAATGCAGGAGAGGCATGAACGTTCGCAGCGTGTTCAGGGCGCGGTAAATAGCGTGGTGGGTGCTGCAAGCCTGCAGCGCGGGGAGGGGTGTGTAGGGAGGCACCTTCGCCCTCCTCA--------CCCAGCTCCAGGTCCAGAGCCGCCAAATCATCTCTATTGTCACCTTCACGTGACAA--CGGGAGTCCTTCCCAACTGTCAGTCAGTGAAGCAACAGATGGAGCCACGGTCATGCCGGTCTGCAGCCCATC--------------------------------------AGGCAGACGCC-GAGGGCCACGTTTCA i calJac3.chr19 C 0 C 0 e mm10.chr1 178901176 772 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I a score=572409.000000 s hg38.chr1_KI270759v1_alt 370226 194 + 425601 GGGAATAACAGTCTTGGTGGCATCGGCGCTTCACCAGGCCTCCTGGAACCATATTCGGGATCCCCAACTGAGTGCTGGAAAGACCACTGGTCAGGAGCAGGGAGCAGGGGTGGAAGGAGGTGGCTCGTCCTGACCTTGACAATGA----GAATCCTGTTTTAAGCTTCACGCTGCTGACTAAACAGAAAGGCCAC-----GGC s panTro4.chr1 225128245 194 + 228333871 GGGAATAACTGTCTTGGTGGCGTCGGCGCTTCACCAGGCCTCCTGGAACCATATTCGGGATCCCCAACTGAGTGCTGGAAAGACCACTGGTCAGGAGCAGGGAGCAGGGGTGGAAGGAGATGGCTCGTCCTGACCTTGACAATGA----GAATCCTGTTTTAAGCTTCACGCTGCTGACTAAACAGAAAGGCCAC-----GGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226499397 192 - 229942017 GGGAATGACAGTCTTGGTGGCATCGGCGCTTCACCAGGCCTCCTAGAACCATATTCAGGATCCCCAACTGAGTGCTGGAAAGACCACGGGTCAGGAGCAGGGAGCAGGGGT-GAAGGAGATGGCTCGTCCTGACCTTGACAATCA----GAAT-CTGTTTTAAGCTTCACGCTGCTGACTAAACAGAAAGGCTAC-----GGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140390217 194 - 143122389 GGGAATAACAGTCTTGGTGGCATCGGCGCTTCACCAGGCCTCCTGGAACCATATTCAGGATCCCCACCTGAGTGCTGGAAAGACCACTGGTCAGGAGCAGGGAGCAGGGGTGGAAGGAGATGGCTCGTCCTGACCTTGACAATCA----GAATCCTGTTTTAAGCTTCACGCTGCTGACTAAACAGAAAGGCTAC-----GGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17091216 188 - 229590362 GGGAATAACAGCCTTGGTGGCATCAGCGCTGCGCCAGGCCTCCTGGAACCACATTCAGGATACCCAGCTGAGTGCTGGAAGGACCACGGGTCTGGAGCAGGGAGCAGGGGCGGAAGGAG------CGCCCTGACCTCGACAATCA----GAATCCTGTTTTAAGCCTCACGCTGCTGACTAAACAGAAAGGCTAC-----GGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223855168 188 - 227556264 GGGAATAACAGCCTTGGTGGCATCGGCGCTGCGCCAGGCCTCCTGGAACCACATTCAGGATACCCAGCTGAGTGCTGGAAGGACCACGGGTCCGGAGCAGGGAGCAGGGGTGGAAGGAG------CGCCCTGACCTCGACAATCA----GAATCCTGTTTTAAGCCTCACGCTGCTGACTAAACAGAAAGGCTAC-----GGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16904793 188 - 220367699 GGGAATAACAGCCTTGGTGGCATCGGCGCTTCGCCAGGCCTCCTGGAACCATATTCAGGATACCCAGCTGAGTGCTGGAAAGACCACTGGTCCGGAGCAGGGAGCAGGGGCGGAAGGAG------CGTCCTGACCTTGACAATCA----GAATCCTGTTTTAAGCCTCACGCTGCTGACTAAACAGAAAGGCTAC-----GGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82704627 188 + 85787240 GGGAATAACAGCCTTGGTGGCATCGGCGCTTCACCAGGCCTCCTGGAACCATATTCAGGAGACCCAGCTGAGTGCTGGAAAGACCACTGGTCCGGAGCAGGGAGCAGGGGCGGAAGGAG------CGTCCTGACCTTGACAATCA----GAATCCTGTTTTCAGCCTCACGCTGCTGACTAAACAGAAAGGCCAC-----GGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14420232 178 - 49578535 GGGAGTAACAGTCTT----------------CACCAGGCCTCCTGCAACCATATTCAGGATCCCCAGCTGAGTGCTGGAAAGGCCACTGGTCAGGAGCAGGGAGCAGGGGTGGAAGGAGACGGCTCGTCCTGACCTTGACCACCA----GAATCCTGTTTTAAGCTTCATGCTACTGACTTAACGGAAAGGCTTC-----TGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178901948 191 + 195471971 GAAAGTGATGGGCTTTATGGCAGCAGGATGTCA-CAGCTGTCCCATAAACATA------ATCCCAAACCAAGTGCTACAAAGGACACTGGTCAGGAGCCAG--GCCAGAGAGACAAGACAAGGCTCACTCCAACCCTGAATGTCATACGAACTCCTG---AAAGCCTTCCAAGGCTGAAGACATAGAGAGGCCATTTGTGGGC i mm10.chr1 I 772 I 182 e canFam3.chr7 36492092 23 + 80974532 I a score=1303119.000000 s hg38.chr1_KI270759v1_alt 370420 447 + 425601 ACAGGGACAGACGTGCGCATG-AAATCACAGGAAGAAAGACAT-TTCACGAACAAATGCATCC--------TCCC------------------AAACCAGTCTGAATCCCTCCGGACAGGGTGATGTTACCACGCAACTGGCCTGGCCTAATGAGCTGGTTTCTGTCATCCCTCCTGGAAGGTTACCCTGTAACACAAGGCGTGCCCACTGACATGCAGCCTGAT-----GGAGCAAGGTTACACCTGTCTGCCTTTTGTGTGCACAAGATCAGAACACAGTCAAGTGAATACAAATGCAACAGCTGCTTGGGGCTCAAACTTGCATAGTC------TATTTTATTTGGATAGAGAGCATAAAATTGGCTCTACCAAAGTCTGGAGGCTGGAAGTAATCATAATTGTAATCTAGTATAATTACCAAGCCTAGACCTTT-ACCTAGTCCTATTTAACCTCCCTTTCACCTTTCCAAGGAATGTGGAGG s panTro4.chr1 225128439 448 + 228333871 ACAGGGACAGACGTGCGCATG-AAATCACAGGAAGAAAGACAT-TTCACGAACAAATGCATCC--------TCCC------------------AAACCAGTCTGAATCCCTCCCGACAAGGTGATGTTACCACGCAACTGGCCTGGCCTAATGAGCTGGTTTCTGTCATCCCTCCTGGAAGGTTACCCTGTAACACAAGGCGTGCCCACTGACATGCAGCCTGAT-----GGAGCAAGGTTACACCTGTCTGCCTTTTGTGTGCACAAGATCAGAACACAGTCAAGTGAATACAAATGCAACAGCTGCTTGGGGCTCAAACTTGCATAGTC------TATTTTATTTGGATAGAGAGCATAAAATTGGCTCTACCAAAGTCTGGAGGCTGGAAGTAATCATAATTGTAATCTAGTATAATTACCAAGCCTAGACCTTTCACCTAGTCCTATTTAACCTCCCTTTCACCTTTCCAAGGAATGTGGAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226499589 453 - 229942017 GTAGGGAAAGACGTGCGCATG-AAATCACAGGAAGAAAGACGT-TTCACGAACAAATCCATCC--------TCCC------------------AAACCAGTCTGAATCCCTCCCGACAAGGTGATGTTACCATGCAACTGGCCTGGCCTAATGAGCTGCTTTCTGTCATCCCTCCTGGAAGGTTACCCTGTAACACAAGGCGTGCCCACTGACATGCAGCCTGATTGAGCAGAGCAAGATTACACCTGTCTGCCTTTTGTGTGTACAAGATCAGAAAACAGTCAAGTGAATACAAATGCAATGGCTGCTTGGGGCTCAAACTTGCGTCGTC------TATTTTATTTGGATAGAGAGCATAAAATTGGCTCTACCAAAGTCTGGAGGCTGGAAGTAATCATAATTGTAATCTAGTATAATTACCAAGCCTAGACCTTTCGCCTAGTCCTATTTAACCTCCCTTTCACGTTTCCAAGGAATGTGGAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140390411 446 - 143122389 ACAGGGAAAGACGTGCACATG-AAATCACAGGAAGAAAGACAT-TTCACGAACACATCCATCC--------TCCC------------------AAACCAGTCTGAATCCCTCCCAACAAGGTGATGTTACCATGCAACTGGCCTGGCCTAATGAGCTGGTTTCTGTCATCTCTCCTGGAAGGTTACCCTGTAACACAAGGCGTGCCCACCGACATGCAGCCTGATTGAGCAGAGCAAGATTACACCTCTC-------TGTGTGCACAACATCAGAACACAGTCAAGTGAATACAAATGCAACAGCTGCTTGGGGCTCAAACTTGCATAGTC------TATTTTATTTGGATAGAGAGCATAAAATTGGCTCTACCAAACTCTGGAGGCTGGAAGTAATCATAATTGTAATCTAGTATAATTACCAAGCCTAGACCTTTTGCCTGGTCCTATTTAACCTCCCTTTCACCTTTCCAAGGAATGTGGAGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17091404 452 - 229590362 ACAGGGAAAGACGGGCGTGTG-AAATCACAGGAAGAAAGACAT-TTCACCAACACATCCATCC--------TCCC------------------AAACCAGTGTGAATCCTTCCTGACAAGGTGATGTTACCATGCAGCTGGCCTGGCCTAATGAGCTGGTTTCTGTCATCTCTCCTGGAAGGTTACCCTGTAACCCAAGGCCTGCCCACTGACATGCAGCCTGATTGAGCAGAGCAAGATTACACCTCTCTGCCTTTTGTGTGCACGAGCTCAGAACAC-----AGTGAATACAAATGCAACGGCTGCTTGGGGCTCAAACTTGCCCAGTC--TGTTTATTTTATTTGGATAGAGAGCATACAATTGGCCCTACCAAACTCTGGAGGCTGGAAGTAGTCATAATTGTAATCTAGTATAATTACCAAGCCTAGACCTTTTGTCTAATCCTATTTAACCTCCTTTTCGCCTTTCCGAGGAACGTGGAGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223855356 452 - 227556264 ACAGGGAAAGACGGGCGTGTG-AAATCACAGGAAGAAAGACAT-TTCACCAACACATCCATCC--------TCCC------------------AAACCAGTGTGAATCCTTCCTGACAAGGTGATGTGACCATGCAGCTGGCCTGGCCTAATGAGCTGGTTTCTGTCATCTCTCCTGGAAGGTTACCCTGTAACCCAAGGCCTGCCCACTGACATGCAGCCTGATTGAGCAGAGCAAGATTACACCTCTCTGCCTTTTGTGTGCACAAGCTCAGAACAC-----AGTGAATACAAATGCAACGGCTGCTTGGGGCTCAAACTTGCCCAGTC--TGTTTATTTTATTTGGATAGAGAGCATACAATTGGCCCTACCAAACTCTGGAGGCTGGAAGTAGTCATAATTGTAATCTAGTATAATTACCAAGCCTAGACCTTTTGTCTAATCCTATTTAACCTCCTTTTCGCCTTTCCGAGGAACGTGGAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16904981 450 - 220367699 ACAGGGAAAGACGGGCGTGTG-AAATCACAGGAAGAAAGA-AT-TTCACCAACACATCCATCC--------TCCC------------------AAACCAGTGTGAAGCCTTCCTGACAAGGTGATGCTACCATGCAGCTGGCCTGGCCTAATGAGCTGGTTTCTGTCATCTCTCCTGGAAGGTTACCCTGTAACCCAAGGCCTGCCCACTGACATGCAGCCTGATTGAGCAGAGCAAGATTACACCTCTCTGCCTTTTGTGTGCACAAGCTCAGAACAC-----AGTGAATACAAATGCAACGGCTGCTTGGGGCTCAAACTTGCCcagtc--tgtttattttatttggataGAGAGCATACAATTGGCCCTACCaaactctggaggctggaagtagTCATAATT-TAATCTAGTATAATTACCAAGCCTAGACCTTTTGTCTAATCCTATTTAACCTCCTTTTCGCCTTTCCGAGGAACGTGGAGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82704815 450 + 85787240 ACAGGGAAAGACGGGCGTGTG-AAATCACAGGAAGAAAGACAT-TTCACCAACAAATCCATCC--------TCCC------------------AAACCAGTGTGAACCCTTCCTGACAAGGTGATGTTACCATGCAGCTGGCCTGGCCTAATGAGCTGGTTTCTGTCATCTCTCCTGGAAGGTTACCCTGTAACCCAAGGCCTGCCCACTGACATGCAGCCTGATTGAGCAGAGCAAGATTACACCTCTCTGCCTTTTGTGTGCACAAGCTCAGAACAC-----AGTGAATACAAATGCAACGGCTGCTTGGGGCTCAAACTTGCCCAGTC--TGTTTATTTTATTTGGATAGAGAGCATACAATTGGCCCTACCAAACTCTGGAGGCTGGAAGTAGTC--AATTGTAATCTAGTATAATTACCAAGCCTAGACCTTTTGTCTAATCCTATTTAACCTCCTTTTCGCCTTTCCGAGGAACATGGAGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14420410 456 - 49578535 GCAGGGAAAGCTGTGAGCATG-AAATCACAGGAAGAAAGACAT-TTCATGAACACATGCATCC--------TCCCA-----------------AAACCAGTCTGAATCCTTCCCGACAGGGTGATGTAACCATGTGACTGGCCTCGCCTAATGAGCTGGTTGATGTCATCTCTCTTGGAAGGTTACCTTGTAACACGGGGAGTGCCCAGTGTGGTGCAGCCTGATGCGGCCGAGCAAGATGACACCTCTCTGCCTTTTGTGTGCACAAGATCAGAACACAGTCAAGTGAATGCAAGTGCAACGGCTGCTTGGGGCTCACGTTGGCGTATTC--CATTCATGTTACTTGGATAGAAAGCGTAGAATTGGCTACATGAAGCCCTGGAGACTGGAAGCAGTCCTGATCGTAATCTAGTATAATTACCAAGCCTAGACCCTCCGCCTAATCCTGTTTAACCCCCTTTCAGCCTGCCCAGGGACTGT--CGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178902321 457 + 195471971 acagatacacatatacacatgtacataccaaacatacacacatatgcacgtgcacactcatacaaacacgtgcccaCAGACACACAGACACAGAGACTGGGCTGAGATCTTCCTGATAGGATG-TGTCACTG-ACCACTGACCTCTCTCACT--GTTAATATGTGTCTTTTTT---------TTTTTTAATAGCATAGGGAAAGCCCAGGGATGTGCAGCCTGATGGGGCAGAGTGAAG--AGATCTCCTTGGTTAGTGTGGG---GGGGTCAGACTAGGGTCAAGCATTTGCAGAT--AAAGACT-CCTGGGATTCTTAGTCACGTGTTCTCTGCTGATTATATGTAGA-AACCAGAATGAGATAAGTT------GACTCTGAAAACTAAAAATAGTCATGATTCTAATCTAATGTAGCCA-CATGCCTAGATGCCTTGACTA-TCCTGTTCAACCCCTTTTAGCTCTTTCCAAGGAATGTGCAGG i mm10.chr1 I 182 C 0 e canFam3.chr7 36492092 23 + 80974532 I a score=391579.000000 s hg38.chr1_KI270759v1_alt 370867 147 + 425601 GATAAGAGAGTCACTGAATAAGTTGGTTGGTAATACTGTATTGTATCTCTCAAATCCATTG----TTTTTtttt----aaagaatgagatca------ataaatataaattccaatattttcttccccaaagcaccatcttgtaccgctttggagAACATT s panTro4.chr1 225128887 153 + 228333871 GATAAGAGAGTCACTGAATAAGTTGGTTGGTAATACTGTATTGTATCTCTCAAATCCATTG----TTTTTtttt----aaagaatgagatcaataaatataaatataaattccaatattttcttccccaaagcaccatcttgtacCGCTTTGGAGAACATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226500042 157 - 229942017 GATAAGAGAGTCACTGAATAAATTAGTTGGTAATACTGTATTGTATCTCTCAAATCCGttgttttttttttttt----aaagaatgaaatcaataaatataaatagaaattctaatattttcttccccaaagcaccatcttgtacCACTTTGGAGAACATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140390857 149 - 143122389 GGTAAGACAGTCACTGAATAAGTTGGTTGGTAATACTGTATTGTACCTCTCAAATCCA-------TTTTTtttt----aaacaatgagatcaataaatataaatagaaattccaatattttcttccccaaagcaccatcttgta-cgcTTTTGAGAACATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17091856 151 - 229590362 GATAAGAGAGTCACTGAATAAGTTGGTTGGTAATACCGTACTGTATCTCTCAACTCCA-------TTTTTTttt--taaaaaagagagatcaatacatataaatagaaattccaatattttcttccccgaagcatcatcttgtaccgc-ctggagaacacT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223855808 152 - 227556264 GATAAGAGAGTCACTGAATAAGTTGGTTGGTAATACCGTATTGTATCTCTCAACTCCA-------TTTTTTTTT-AAAAaaaagagagatcaatacatataaatagaaattccaatattttcttccccgaagcatcatcttgtaccgc-ctggagaacacT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16905431 153 - 220367699 GATAAGAGAGTCACTGAATAAGTTGGTTGGTAATACTGTATTGTATCTctcaaatcca-------ttttttttttaaaaaagaaagagatcaataaatataaatagaaattcCAATATTTTCTTCCCCAAAGCATCATCTTGTACTGC-TTGGAGAACACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82705265 152 + 85787240 GATAAGAGAGTCACTGAATAAGCTGGTTGGTAATACTGTATTGTATCTCTCAAATCCA-------TTTTTTTTA-AAAAAAGAAAGAGATCaataaatataaatagaaattccaatattttcttccccaaagcatcatcttgtaccgc-ttggggAACATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14420866 144 - 49578535 GGTAAGCGGGTCACAGAATAAGTTGGTTGGTAATACTGTATTGTGTCTCTCAAATC---------TTTTtttta--------aaagagattaataaatataaaaggaaattccaatattttcttctccaaagaatcatcttgtaccactttggagAACGTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178902778 0 + 195471971 C e canFam3.chr7 36492092 23 + 80974532 I a score=83253.000000 s hg38.chr1_KI270759v1_alt 371014 23 + 425601 AGAGGGACTCACCTGGGTTTCCA s panTro4.chr1 225129040 23 + 228333871 AGAGGGACTCACCTGGGTTTCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226500199 23 - 229942017 AGAGGGACTCACCTGGGTTTTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140391006 23 - 143122389 AGAGGGACTCACCTGGGTTTCCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17092007 23 - 229590362 AGAGGGACCCACCTGAGTTTGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223855960 23 - 227556264 AGAGGGACCCACCTGAGTTTGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16905584 23 - 220367699 AGAGGGACTCACCTGAGTTTCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82705417 23 + 85787240 AGAGGGACTCACCTGAGTTTCCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14421010 23 - 49578535 AGAGGGACTCACCTGAGTTCCCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178902778 23 + 195471971 AAAGGGACTCACATGAGTTTCTG i mm10.chr1 C 0 C 0 e canFam3.chr7 36492092 23 + 80974532 I a score=39660.000000 s hg38.chr1_KI270759v1_alt 371037 13 + 425601 GAGCTGGAAAACA s panTro4.chr1 225129063 13 + 228333871 GAGCTGGAAAACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226500222 13 - 229942017 GAGCTGGAAAACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140391029 13 - 143122389 GAGCTGGAAAACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17092030 13 - 229590362 GAGCTGGAAAACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223855983 13 - 227556264 GAGCTGGAAAACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16905607 13 - 220367699 GAGCTGGAAAACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82705440 13 + 85787240 GAGCTGGAAAACA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178902801 13 + 195471971 GAGCTACAAAGTA i mm10.chr1 C 0 I 403 e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C a score=35247.000000 s hg38.chr1_KI270759v1_alt 371050 16 + 425601 TAAGCCCCATAATGTA s panTro4.chr1 225129076 16 + 228333871 AAAGCCCCATAATGTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226500235 16 - 229942017 AAAGCCCCATAATGTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140391042 16 - 143122389 AAAGCCCCATAATGTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17092043 16 - 229590362 AAAGCCCCGTAATGTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223855996 16 - 227556264 AAAGCCCCGCAATGTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16905620 16 - 220367699 AAAGCCCCATAATGTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82705453 16 + 85787240 AAAGCCCCATAATGTC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C a score=26865.000000 s hg38.chr1_KI270759v1_alt 371066 53 + 425601 CCCAGTCCCCACGGCGCGCTGCCATCTTAGGCCCAGTCCCCACTGCACGCTGT s panTro4.chr1 225129092 53 + 228333871 CCCAGTCCCCGCTGCACGCTGTCATCTTAGGCCCAGTCCCCGCTGCGCGCTGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226500251 53 - 229942017 CCCAGTCCCCACTGTGTGCTGTCATCTTAGGCCCAGTCCCCACTGCGCGCTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140391058 53 - 143122389 CCCAGTCCCCACTGCGCGCTGTCATCTTAGGCCCGGTCCCCACTGCGCGCTGT i nomLeu3.chr5 C 0 T 31 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C e rheMac3.chr1 17092059 0 - 229590362 C e chlSab2.chr25 82705469 0 + 85787240 C e papAnu2.chr1 16905636 0 - 220367699 C e macFas5.chr1 223856012 0 - 227556264 C a score=19790.000000 s hg38.chr1_KI270759v1_alt 371119 40 + 425601 CATCTTAGGCCCAGTCCCCGCTGGGCGCTGCCATCTTAGG s panTro4.chr1 225129145 40 + 228333871 CACCTTAGGCCCAGTCCCCGCTGGGCGCTGCCACCTGAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226500304 40 - 229942017 CATCTTAGGCCCAGTCCCCACTGGGCGCTGTCATCTTAGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140391080 40 - 143122389 CATCTTAGGCCCGGTCCCCACTGCGCGCTGTCATCTTAGG i nomLeu3.chr5 T 31 T 62 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C e rheMac3.chr1 17092059 0 - 229590362 C e chlSab2.chr25 82705469 0 + 85787240 C e papAnu2.chr1 16905636 0 - 220367699 C e macFas5.chr1 223856012 0 - 227556264 C a score=37331.000000 s hg38.chr1_KI270759v1_alt 371159 79 + 425601 CCCAGTCCCCGCTGGGCGCTGCCATCTTAGGCCCAGTCCCCGCTGCGCGCTGCCATCTTAGGCCCAGTCCCCGCTGCGT s panTro4.chr1 225129185 79 + 228333871 CCCAGTCCGTGCTGCGCGCTGCCACCTTAGGCCCAGTCCCCGCTGGGCGCTGCCACCTTAGGCCCAGTCCCCGCTGGGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226500344 79 - 229942017 CCCAGTCCCCACTGGGCGCTGTCATCTTAGGCCCAGTCCCCACTGCACGCTGTCATCTTAGGGCCAGTCCCCACTGCGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140391058 79 - 143122389 CCCAGTCCCCACTGCGCGCTGTCATCTTAGGCCCGGTCCCCACTGCGCGCTGTCATCTTAGGCCCGGTCCCCACTGCGT i nomLeu3.chr5 T 62 C 0 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C e rheMac3.chr1 17092059 0 - 229590362 C e chlSab2.chr25 82705469 0 + 85787240 C e papAnu2.chr1 16905636 0 - 220367699 C e macFas5.chr1 223856012 0 - 227556264 C a score=10449.000000 s hg38.chr1_KI270759v1_alt 371238 56 + 425601 GCTGCCATCTTAGGCCCAGTCCCCGCTGCGCGCTGCCATCTTGGGCCCAGTCCCCG s panTro4.chr1 225129264 56 + 228333871 GCTGCCATCTTAGGCCCAGTCCCCGCTGGGCGCTGCCACCTTAGGCCCAGTCCCCG i panTro4.chr1 C 0 I 327 s nomLeu3.chr5 140391137 48 - 143122389 GCTGTCATCTTAGGCCCGGTCCCCACTGCACGCTGTCATCTTAG--CCAG------ i nomLeu3.chr5 C 0 C 0 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C e rheMac3.chr1 17092059 0 - 229590362 C e chlSab2.chr25 82705469 0 + 85787240 C e papAnu2.chr1 16905636 0 - 220367699 C e macFas5.chr1 223856012 0 - 227556264 C e ponAbe2.chr1 226500423 0 - 229942017 C a score=7369.000000 s hg38.chr1_KI270759v1_alt 371294 34 + 425601 AGGCCCAGTCCCCACTGCGCGCTGCCATCTTAGG s panTro4.chr1 225129647 34 + 228333871 AGGCCCAGTCCCCGCTGCGCGCTGCCACCTTAGG i panTro4.chr1 I 327 C 0 s nomLeu3.chr5 140391185 27 - 143122389 -------GTCCCCACTGCGCGCTGTCATCTTAGG i nomLeu3.chr5 C 0 T 123 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C e rheMac3.chr1 17092059 0 - 229590362 C e chlSab2.chr25 82705469 0 + 85787240 C e papAnu2.chr1 16905636 0 - 220367699 C e macFas5.chr1 223856012 0 - 227556264 C e ponAbe2.chr1 226500423 0 - 229942017 C a score=7595.000000 s hg38.chr1_KI270759v1_alt 371328 31 + 425601 CCCAGTCCCCGCTGGGCGCTGCCATCTTAGG s panTro4.chr1 225129681 31 + 228333871 CCCAGTCCCCGCTGGGCGCTGCCACCTTAGG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140391089 31 - 143122389 CCCGGTCCCCACTGCGCGCTGTCATCTTAGG i nomLeu3.chr5 T 123 T 9 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C e rheMac3.chr1 17092059 0 - 229590362 C e chlSab2.chr25 82705469 0 + 85787240 C e papAnu2.chr1 16905636 0 - 220367699 C e macFas5.chr1 223856012 0 - 227556264 C e ponAbe2.chr1 226500423 0 - 229942017 C a score=2164.000000 s hg38.chr1_KI270759v1_alt 371359 22 + 425601 CCCAGTCCCCGCTGCGCGCTGC s panTro4.chr1 225129712 22 + 228333871 CCCAGTCCCCGCTGCGCGCTGC i panTro4.chr1 C 0 C 0 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C e rheMac3.chr1 17092059 0 - 229590362 C e chlSab2.chr25 82705469 0 + 85787240 C e papAnu2.chr1 16905636 0 - 220367699 C e macFas5.chr1 223856012 0 - 227556264 C e nomLeu3.chr5 140391120 9 - 143122389 T e ponAbe2.chr1 226500423 0 - 229942017 C a score=13662.000000 s hg38.chr1_KI270759v1_alt 371381 71 + 425601 CATCTTAGGCCCAGTCCCCGCTGCGCGCTGCCATCTTAGGCCCAGTCCCCGCTGCGCGCTGC-------------------------------CATCTTAGG s panTro4.chr1 225129734 102 + 228333871 CACCTTAGGCCCCGTCCCCGCTGCGCGCTGCCACCTTAGGCCCAGTCCGCGCTGCGCGCTGCCACCTTAGGCCCAGTCCCTGCTGGGCGCTGTCATCTTAGG i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140391111 70 - 143122389 CATCTTAGGCCCGGTCCCCACTGCGTGCTGTCATCTTAGGCCCGGTCCCCACTGCACGCTGT-------------------------------CATCTTA-G i nomLeu3.chr5 T 9 C 0 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C e rheMac3.chr1 17092059 0 - 229590362 C e chlSab2.chr25 82705469 0 + 85787240 C e papAnu2.chr1 16905636 0 - 220367699 C e macFas5.chr1 223856012 0 - 227556264 C e ponAbe2.chr1 226500423 0 - 229942017 C a score=30705.000000 s hg38.chr1_KI270759v1_alt 371452 17 + 425601 CCCAGTCCCCGCTGCGC s panTro4.chr1 225129836 17 + 228333871 CCCAGTCCCCGCTGCGC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140391181 17 - 143122389 CCAGGTCCCCACTGCGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17092059 17 - 229590362 CCCAGTCCCCGCTGTGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223856012 17 - 227556264 CCCAGTCCCCGCTGTGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16905636 17 - 220367699 CCCAGTCCCCGCTGTGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82705469 17 + 85787240 CCCAGTCCCCGCTGTGC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C e ponAbe2.chr1 226500423 0 - 229942017 C a score=299920.000000 s hg38.chr1_KI270759v1_alt 371469 138 + 425601 GCTGCCATCTTAGGGTTTTGCTTAGGGGGCAGATAGAAAATAGTAAATGAAACCCTTTCAGATATTTCCTGGCCTTATTTAGTAAACACGTCTTTTTGAAAGAACTCTGAATACACCTGCAGATTTTTCAAAGCCCAG s panTro4.chr1 225129853 138 + 228333871 GCTGTCATCTTAGGGTTTTGCTTAGGGGGCAGATAGAAAATTGTAAATGAAACCCTTTCAGATATTTCCTGGCCTTATTTAGTAAACACATCTTTTTGAAAGAACTCTGAATACACCTGCAGATTTTTCAAAGCCCAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226500423 135 - 229942017 GCTGTCATCTTAGGGTTTTGCTTAGGGGG-AGATAGAAAATAGTAAATGAAACCCTTCCAGATATATCCTGGCCTTATTTAGT-AACACATCTTTTTGAAAG-ACTCTGAATACACCTGCAGATTTTTCAAAGCCCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140391198 138 - 143122389 GCTGTCATCTTAGGGTTTTGCTTAGGCGGGAGATAGAAGATAGTAAACGAGACCCTTCCAGATAGTTCCTGGCCTTATTTAGTAAACACATCTTTTTGAAAGAACTCTGAATACACCTGCAGATTTTTCAAAGCCCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17092076 137 - 229590362 TCTGTCATCTTAGGGTTTTGCTTAGGGAGGAGGCAAAAAAGAGTAAATGAAACCCTTCCAGGTGTTTCCTGGCCTTATTTAGTAAACACGTCTTTTTGAAAGAACGCTGAACACACTTGCAGA-TTTTCAAAGGCCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223856029 137 - 227556264 TCTGTCATCTTAGGGTTTTGCTTAGGGAGGAGGCAAAAAAGAGTAAATGAAACCCTTCCAGGTGTTTCCTGGCCTTATTTAGTAAACACGTCTTTTTGAAAGAACGCTGAACACACTTGCAGA-TTTTCAAAGGCCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16905653 137 - 220367699 TCTGTCATCTTAGGGTTTTGCTTAGGGAGGAGgcaaaaaatagtaaatgaaacCCTTCCAGGTGTTTCCTGGCCTTATTTAGTAAACACGTCTTTTTGAAAGAACGCTGAATACACTTGCAGA-TTTTCAAAGGCCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82705486 137 + 85787240 TCTGTCATCTTAGGGTTTTGCTTAGGGAGGAGGCAAAAAATAGTAAATGAAACCCTTCCAGGTGTTTCCTGGCCTTATTTAGTAAACACATCTTTTTGAAAGAATGCTGAATACGCTTGCAGA-TTTTCAAAGGCCAG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178902814 403 + 195471971 I e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C a score=33628.000000 s hg38.chr1_KI270759v1_alt 371607 14 + 425601 ATTCTACACACTTC s panTro4.chr1 225129991 14 + 228333871 ATTCTACACACTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226500558 14 - 229942017 ATTCTGCACACTTC i ponAbe2.chr1 C 0 M 288 s nomLeu3.chr5 140391336 14 - 143122389 ATTCTAAACGCTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17092213 14 - 229590362 ATTCTACACACTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223856166 14 - 227556264 ATTCTACACACTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16905790 14 - 220367699 ATTCTACACACTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82705623 14 + 85787240 ATTCTACACACTTC i chlSab2.chr25 C 0 C 0 s mm10.chr1 178903217 14 + 195471971 ACCCCACCTAGCTG i mm10.chr1 I 403 C 0 e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C a score=112869.000000 s hg38.chr1_KI270759v1_alt 371621 55 + 425601 TAATGTCAACCTTGAA--GGGAGATCGTAGATTGAATT--------ACAGAAAGGGGTGCTGTCA s panTro4.chr1 225130005 55 + 228333871 TAATGTCAACCTTGAA--GGGAGATCATAGATTGAATT--------ACAGAAAGGGGTGCTGTCA i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140391350 55 - 143122389 TAATGTCAACCTTGAA--GGGAGATCGTACATTGAATT--------ACAGAAAGGGGTGCTGTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17092227 55 - 229590362 TAATGTCAACCCTGAA--GGGAGGTCGTAGATTGGATT--------ACAGAAAGGGGTGCTGTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223856180 55 - 227556264 TAATGTCAACCCTGAA--GGGAGGTCGTAGATTGGATT--------ACAGAAAGGGGTGCTGTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16905804 55 - 220367699 TAATGTCAACCCTGAA--GGGAGATCGTAGATTGGATT--------ACAGAAAGGGGTGCTGTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82705637 55 + 85787240 TAATGTCAACCCTGAA--GGGAGATCGTAGATTGAATT--------ACAGAAAGGGGTGCTGTCA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178903231 65 + 195471971 TGATGCCAACTCTGAAAGGGGAGATAACGGAGTGAGATTTAAAAAAAAAAAAAGAGGCCTTATCA i mm10.chr1 C 0 C 0 e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C e ponAbe2.chr1 226500572 288 - 229942017 M a score=368938.000000 s hg38.chr1_KI270759v1_alt 371676 149 + 425601 AAATGCCACATCAAATATAAACTTCACATATGTTTCTTACCTG-AAACACTCACTCACACTCATGGAAAAGCACAGGAA------TGTTCTAAAAATGCAAGTTTATCACGA-AGGAGACACAGGAGGTTCAGAGACGATGAAGCGGC-AAGCCG---GGA s panTro4.chr1 225130060 149 + 228333871 AAATGCCACATCAAATATAAACTTCACGTATGTTTCTTACCTG-AAACAAACACTCACACTCATGGAAAAGCACAGGAA------TGTTCTAAAAATGCAAGTTTATCACGA-AGGAGACACAGGAGGTTCAGAGATCATGAAGCGGC-AAGCCG---GGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226500865 149 - 229942017 AAATGCCACATCAAATATAAACTTCACGTATGTTTCTTACCTGCAAACAAACA--CACACTCATGGAAAAGCACAGGAA------TGTTCTAAAAATGCAAGTTCATCACGATAGGAGACACAGGAGGTTCAGAGACGATGAAGCGGC-AAGCCG---GGA i ponAbe2.chr1 M 288 C 0 s nomLeu3.chr5 140391405 146 - 143122389 AAATGCCACATCAAATATAAACTTCACGTATGTTTCTTACCTG-AAACAAA----CACACTCATGGAAAAGCACAGGAA------TGTTCTAAAAATGCAAGTTTATCACGA-ACGAGACACAGGAGGTTCAGAGATGATGAAGCGGCAAAGCCG---GGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17092282 149 - 229590362 AAGTGCCACATCAAATATAAACCTCATGTATGTTTCTTAGCTG-AAACAAACACTCACACTCATGGAAAAGCACAGGAA------TGTTCTACAAATGCAAGTTTATCACGA-AGGCAACACAGGAGGTTCCAAGATGATGCAGCGGC-GAGCCA---GGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223856235 149 - 227556264 AAGTGCCACATCAAATATAAACCTCATGTATGTTTCTTAGCTG-AAACAAACACTCACACTCATGGAAAAGCACAGGAA------TGTTCTACAAATGCAAGTTTATCACGA-AGGCAACACAGGAGGTTCCGAGATGATGCAGCGGC-GAGCCA---GGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16905859 145 - 220367699 AAGTGCCACATCAAATATAAACCTCATGTATGTTTCTTACCTG-AAACAAA----CACACTCATGGAAAAGCACAGGAA------TGTTCTAAAAATGCAAGTTTATCACGA-AGGCAACACAGGAGGTTCCGAGATGATGAAGCGGC-GAGCCA---GGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82705692 149 + 85787240 AAGTGCCACATCAAATATAAACTTCATGTATGTTTCTTACCTG-AAACAAACACTCACACTCATGGAAAAGCACAGGAA------TGTTCTAAAAATGCAAGTTTATCACGA-AGGCAACACAGGAGGTTCCGAGATGATGAAGCGGC-GAGCCA---GGA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178903296 157 + 195471971 -AATGCCACATCCAATACATGCTTCGTACGCATTTGCTACCTG-AAACCAATATTGAAGCTCAAAGGAAAGCAAAAGAATAAAACTATTCCAGACACATAAGCTTATAATGA-AGGATACCCAGGTGATCATGGGACGACAAGGCAGC-AATCAAGATGGT i mm10.chr1 C 0 C 0 e canFam3.chr7 36492092 23 + 80974532 I e calJac3.chr19 14421033 0 - 49578535 C a score=1478824.000000 s hg38.chr1_KI270759v1_alt 371825 502 + 425601 GGAAAGATCTGAGAGAAGCCACCAGGCTGGGGCAGCATTTCATTATATCCAGAATTCCACTTGGGCTCTGCAGTT-TCTTTCTTCCTGAGAATTATTTAAAAGTCCCTGGGGAAGGACAAGAGTAAG-AAAAAATCAAGGGAGAGCCTCTGGGTTACTATGACAACATGACTCTTGACCCCTTCTCTCTCACCCAGCAGTGCCTAAGTCCCTTTTGCATTGCTGCAGAGATCTCTGGCACTGTGATTAGCACATACTCCTAAACCTGAGGATGATTTAAAGTGGAAGGAGATCAAAGTTTCTAAATAGTACAATGAGCTCATCTTGACTCAAAAGATGTGT-AATGGTTATAATGCAACATAACTGAGATGTTTCCTTATCCCCCCCACCAGTAAAGCTGGTCACAGACCGTTGCAAAGGCTCTGTGAAAAATGACAGGTCTATGGAAATGTCTACTGCAAAGCACTGATAACTCAGGATAATGA-----TTCAGGCCAAAAAAAAATTT- s panTro4.chr1 225130209 502 + 228333871 GGAAAGATCTGAGAGAAGCCACCAGGCTGGGGCAGGATTTCATTATATCCAGAATTCCACTTGGGCTCTGCAGTT-TCTTTCTTCCTGAGAATTATTTAAAAGTCCCTGGGGAAGGACAAGAGTAAG-AAAAAATCAAGGGAGAGCCTCTGGGTTACTATGACAACATGACTCTTGACCCCTTCTCTCTCACCCAGCAGTGCCTAAGCCCCTTTTGCATTGCTGCAGAGATCTCTGGCATTATGATTAGCACATGCTCCTAAACCTGAGGATGATTTAAAGTGGAAGGAGATCAAAGTTTCTAAATAGTACAGTGAGCTCATCTTGACTCAAAAGATGTGT-AATGGTTATAATGCAACATAACTGAGATGTTTCCTTATCCCCCCCACCAGTAAAGCCGGTCACAGACTGTTGCAAAGGCTCTGTAAAAAATGACAGGTCTATGGAAATGTCTACTGCAAAGCACTGATAACTCAGGATAATGG-----TTCAGGCCAAAAAAAAATTT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226501014 495 - 229942017 GGAAAGATCTGAGAGAAACCACCAGGCTGGGGCAGGATTCCATTATATCCAGAATTCCA------CTCTGCAGTT-TCTTTCTTCCTGAGAATGATTTAAAAGTCCCTGGGGAAGGACAAGAGTAAGAAAAAAATCAAGGGAGAGCCTCTGGGTTACTATGACAACGTGACTCTTGACTCCTTCTCTCTCACCCAGCGGTACCTAAGTCCCTTTTGCATTGCTGCAGAGATCTCTGGCATTACGATTAACACATGCTGCTAAACCTGAGGATGATTTAAAGTGGAAGGAGATCAAAGTTTCTAAATAGTACAATGAGCTCATCTTGACTCAAAAGATGTGT-AATGGTTATAATGCAACATAACTGAGATGTTTCCTTATCCCTCCC-CCAGTAAAGCTGGTCACAAACCACTGCAAAGGCTCTGTAAAAAATGACAAGTCTATGGAAATGTCTACTGCAAAGCACTGATAACTCAGGATAATGG-----TTCAGACC-AGATAAAATGT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140391551 500 - 143122389 GGAAAGATCTGAGAGAAGCTGCCAGGCTGGGGCAGGATTTCATTATATCCAGAATTCCACTTGGGCTCTGCAGTT-TCTTTCTTCCTGAGAATTATTTAAAAGTCCCTGGGGAAGGACAAGAGTAAG-AAAAAGTCAAGGGAGAGCCTCTGGGTTACTATGACAACATGACTCTTGACTCCTCCTCTCTCACCCAGCGGTGCCTAAGTCCCTTTTGCATTGCTGCAGAGATCTCTGGCATTACGGTGAACACATGCTCCTAAATCTGAGGACGATTTAAAGTGGAAGGAGATCAAAGTTTCTAAATAGTACAATGAGCTCATCTTGACTCAAAAGATGTGT-AATAGTTATAATGCAACATAACTGAGATGTTTCCTTATCCCTCCC-CCAGTAAAGCTGGTCACAAACCATGGCAAAGGCTCTGTAAAAAATGACAGGTCTATGGAAATGTCTACTGCAAAGCACTGATAACTCAGGATAATGG-----TTCAGGCC-AAATAAAATTT- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17092431 500 - 229590362 GGAGAGATCTGAGAGAAGCCGCCAAGCTAGGGCAGGATTTCATTATACCAAGAATTCCACTTGG-CTCTGCAGTT-TGTTTCTTCCTGAGAATTATTGAAAAGTTCCCGGGGAAGGACAAGAGTAAGAAAAAAATCAAGGGAGAGTCTCTGGGTTACTATGACAACGTGACTCTTGACTCCATCTTCCTCACCCAGCGGTGCCTAAGTCCCTTTTGCGTTGCTGCAGAGATCTCTGGCATTGGGATTAACACATGCTCCTAAACCTGAGGATGATTTAAAGCTGAAGGAGATCAAAGTTTCTAAATAGTACAATGAGCTCATCTTGACTCAACAGATGTGT-AATGGTTATAATGCAACATAACTGAGATGTTTCCATATCCCTCCC-CAAGTAAAGCTCGTCACATACCATTGCAAAGGCTCTGTAAAAAATGACAGGTCTATGGAAATGTCTACTGCAAAGCACTGATAACTCAGGATAATGG-----TTTGGGCC-AAATACAATTT- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223856384 499 - 227556264 GGAGAGATCTGAGAGAAGCCGCCAGGCTAGGGCAGGATTTCATTATACCAAGAATTCCACTTGG-CTCTGCAGTT-TGTTTCTTCCTGAGAATTATTGAAAAGTCCCCGGGGAAGGACAAGAGTAAG-AAAAAATCAAGGGAGAGTCTCTGGGTTACTATGACAACGTGACTCTTGACTCCATCTTTCTCACCCAGCGGTGCCTAAGTCCCTTTTGCGTTGCTGCAGAGATCTCTGGCATTGGGATTAACACATGCTCCTAAACCTGAGGATGATTTAAAGCCGAAGGAGATCAAAGTTTCTAAATAGTACAATGAGCTCATCTTGACTCAACAGATGTGT-AATGGTTATAATGCAACATAACTGAGATGTTTCCATATCCCTCCC-CAAGTAAAGCTCGTCACATACCATTGCAAAGGCTCTGTAAAAAATGACAGGTCTATGGAAATGTCTACTGCAAAGCACTGATAACTCAGGATAATGG-----TTTGGGCC-AAATACAATTT- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16906004 499 - 220367699 GGAGAGATCTGAGAGAAGCCACCAGGCTAGGGTAGGATTTCATTATATCAATAATTCCACTTGG-CTCTGCAGTT-TCTTTCTTCCAGAGAATTATTGAAAAGTCCCTGGGGAAGGACAAGAGTAAG-AAAAAATCAAGGGAGAGTCTCTGGGTTACTATGACAACATGACTCTTGACTCCATCTTTCTCACCCAGCGGTGCCTAAGTCCCTTTTGCGTTGCTGCAGAGATCTCTGGCATTGGGATTAACACATGCTCCTAAACCTGAGGATGATTTAAAGTGGAAGGAGATCAAAGTTTCTAAATAGTACAATGAGCTCATCTTGACTCAACAGATGTGT-AATGGTTATAATGCAACATAACTGAGATGTTTCCATATCCCTCCC-CAAGTAAATCTGGTCACAAACCATTGCAAAGGCTCTGTAAAAAATGACAGGTCTATGGAAATGTCTACTGCAAAGCACTGATAACTCAGGATAATGG-----TTTGGGCC-AAATACAATTT- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82705841 499 + 85787240 GGAGAGATCTGAGAGAAGCCACCAGGCTAGGGTAGGATTTCATTATATCGAGAATTCCACTTGG-CTCTGCAGTT-TCTTTCTTCCTGAGAATTATTGAAAAGTCCCCAGGGAAGGACAAGAATAAG-AAAAAATCAAGGGAGAGTCTCTGGGTTACTATGACAACATGACTCTTGACTCCATCTTTCTCACCCAGCGGTGCCTAAGTCCCTTTTGCGTTGCTGCAGAGATCTCTGGCATTGGGATTAACACATGTTCCTAAACCTGAGGATGATTTAAAGTCGAAGGAGATCAAAGTTTCTAAATAGTACAATGAGCTCATCTTGACTCAACGGATGTGT-AATGGTTATAATGCAACATAACTGAGATGTTTCCATATCCCTCCC-CAAGTAAAGCTGGTCACATACCATTGCAAAGGCTCTGTAAAAAATGACAGGTCTATGGAAATGTCTACTGCAAAGCACTGATAACTCAGGATAATGG-----TTTGGGCC-AAATACAATTT- i chlSab2.chr25 C 0 C 0 s mm10.chr1 178903453 502 + 195471971 AGGGAGACCTGAGAAAAGATACTGGGTGAAATCAG-ATTTCACTGCATCAAAGATTCCATTTGTAGTCTTATTTT-TCTCTCTTCTGAAGAATTCTGTGAAAGTCCAAGGGCACAGACAGGGGTGAG--TAGAATCAGGGAAGTGCTTCTAGGTTACCATGACAACGCAATTCCTGACTTTATTTTTATGCCTCATCAGCCCATAAGTCCAGTTTGAATGCCATCAGAGGTCTCTGACATTAAGATGAACATGTACTCCC-GGCCCAAGAATGATGGAAACTTGAAAGGAAGCAAAGTTTCCAAAGAGTACAGTGACCTCATCTTTACTCTGAAGACGTGT-GATAGCCACACTTTGGCATAATGGAGATGGTCCCTAGTCCTGCCC-CGTGATTAAACAGCCATAGAGCATTGCAGAGGCTAGCTCACAAGTGTCAGGACTGTAAAAATGGCTGTAGCAAAGCTTTGATGATTAATGATAATAAGACTTCTTGGACT-CAATAAGATTT- i mm10.chr1 C 0 C 0 s canFam3.chr7 36492115 464 + 80974532 GGAAAGATTTGGGAGAAGGCGAAAGGCAAGAGTAGGATTTCATTATGTCAAGAATTCCATTTGTAACCTTCATTTAAGTCTCTTTTTGAGAATTCTTTAAAAATCTACGGAGAAAGACAGAAGTGAG-TGGGTATCAGGGGAGGGGCTCTCTATCACCAGGACAACATGACTCTTGCCACCATCTCTGTCACCCATCAGTGCCTAACTCCCTTTTGGATTACTGCAAAGG-CTCTGACCTTGGAGTTAATGCACGCTC---------------------ACTTGAAGAACAGCAAAGTTTCCACACAGTACAGTGAGCCCGTCTTTACCCAGAGTATATGTAAATGACTATAATGCAACATAACTGAGATATTTCCTTGTCCCTCAA-CCAGTAAAGCT-GTCCTGCATGGCTGCGGTGGCTCTATAAAACATGACTGGACTATAGGAATGTCT------AAGCATC----------GATAATGG-----CTGAGGCC-AGAAGaagtttt i canFam3.chr7 I 23 I 861 e calJac3.chr19 14421033 0 - 49578535 C a score=1045011.000000 s hg38.chr1_KI270759v1_alt 372327 356 + 425601 AAAAGGAAGTGAAACTTCAGACAATGTGAAACATGTCAGAGTCGTGTTTGCATTCTAAATTGCAGTAATGATATAAACATCATTATTCCTAATCTGATCCTGCAGG------------------------------------TGGATCAAATACGCACACATCTATTAAAGAACAGTCT---------------------------------------------GCATGCTC--------AGTAAG--TGCACAGGGTCTTATTACCGAATCTTTCAGCAC-ATCTTCGTTTCATCTTTAACTTCATTAGAATATGTAAGTTTTGGCAGTCTATTGATTCAGGAGAAATCTATGGATCTA--TTATTTTCTATTTGTCTATAAAGTCCACTAATTCACCTTCTAAGTTGTTGTTTT-----------GGG----------------TTTTCATCAAAGTGATGACATTCC-AACTCCT s panTro4.chr1 225130711 357 + 228333871 AAAAGGAAGTGAAACCTCAGACAATGTGAAACATGTCAGAGTCGTGTTTGCATTCTAAATTGCAGTAATGATATAAACATCATTATTCCTAATCTGATCCTGCAGG------------------------------------TGGATCAAATAAGCACGCATCTATTAAAGAACAGTCT---------------------------------------------GCACGCTC--------AGTAAG--TGCACAGGGTCTTATTACCGAATCTTTCAGCAC-ATCTTCGTTTCATCTTTAACTTCATTAGAATATGTAAGTTTTGGCAGTCTATTGATTCAGGAGAAATCTATGGATCTA--TTATTTTCTATTTGTCTATAAAGTCCACTAATTTACCTTCTAAGTTGTTGTTTT-----------GGG----------------TTTTCATCAAAGTGATGACATTCCTAGCTCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226501509 357 - 229942017 AAAAGGAAGTGAAACTTCAGACAATGTGAAACATGTCAGAGTCGTATTTGCATTCTAAATTGCAGTAATGATATAAACATCATTATTCCTAATCTGATCCTGCAGG------------------------------------TGGATCAAATAAGCACGCATCTATTAAAGAACAGTCT---------------------------------------------GCATGCTC--------AGTAAG--TGCACAGGGTCTTATTACCGAATCTTTCGGCAC-ATCTTCGTTTCATCTTTAACTTCATTAGAATATGTAAGTTTTGGCAGTCTATTGATTCAGGAGAAATCTATGGATCTA--TTATTTTCTATTTGTCTATAAGGTCCACTAATTTACCTTCTAAGTTGTTGTTTT-----------GGG----------------TTTTCATCAAAGTGATGACATTCCTAGCTCCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140392051 357 - 143122389 AAAAGGAAGTGAAACTTCAGACAATGTGAAACATGTCAGAGTCCTATTTGCATTCTAAATTGCAGTAACGATATAAACATCATTATTCCTAATCTGATCCTGCAGG------------------------------------TGGATCAAATAAGCACGCATCTATTAAAGAACAGTCT---------------------------------------------GCATGCTC--------AGTAAG--TGCACAAGGTCTTATTACCGAATCTTCTGGCAC-ATCTTCGTTTCATCTTTAACTTCATTAGAATATGTAAGTTTTGGCAGTCTGTTGATTCAGGAGAAATCTATGGATCTA--TTATTTTCTATTTGTCTATAAGGTCCACTAATTTGCCTTCTAAGTCGTTGTTTT-----------GGG----------------TTTTCATCAAGGTGATGACATTCCTAGCTCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17092931 356 - 229590362 AAAAGGAAGTGAAACTTCAGACAGTGTGAAACATGTCAGAGTCATATTTGCATTCTAAATTGCAGTAATGATATAAACATCATTATTCCTAATCTGATCCTGCAGG------------------------------------TGGATCAAATAAGCACGCATCTATTAAAGAACAGTCT---------------------------------------------GCATGCT---------AGTAAG--TGCACAGGGTCTTGTTACCGAACCTTTCGGTAC-ATCTTCGTTTCATCTTTAACTTCATTAGAATATATAAGTTTTGGCAGTCTATTGATTCAGGGGAAATCTATGGATCTA--TTGTTTTCTATTTGTCTATAAGGTCCACTAATTTACTTTCTAAGTTGTTGTTTT-----------GGG----------------TTTTCATCAAAGTGATGACATTCCTAGCTCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223856883 356 - 227556264 AAAAGGAAGTGAAACTTCAGACAGTGTGAAACATGTCAGAGTCGTATTTGCATTCTAAATTGCAGTAATGATATAAACATCATTATTCTTAATCTGATCCTGCAGG------------------------------------TGGATCAAATAAGCACGCATCTATTAAAGAACAGTCT---------------------------------------------GCATGCT---------AGTAAG--TGCACAGGGTCTTGTTACCGAACCTTTCGGTAC-ATCTTCGTTTCATCTTTAACTTCATTAGAATATGTAAGTTTTGGCAGTCTATTGATTCAGGGGAAATCTATGGATCTA--TTGTTTTCTATTTGTCTATAAGGTCCACTAATTTACTTTCTAAGTTGTTGTTTT-----------GGG----------------TTTTCATCAAAGTGATGACATTCCTAGCTCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16906503 356 - 220367699 AAAAGGAAGTGAAACTTCAGACAGTGTGAAACATGTCAGAGTCATATTTGCATTCTAAATTGCAGTAATGATATAAACATCATTATTCCTAATCTGATCCTGCAGG------------------------------------TGGATCAAATAAGCACGCATCTATTAAAGAACAGTCT---------------------------------------------GCATGCT---------AGTAAG--TGCACAGGGTCTTGTTACCGAACCTTTCGGTAC-ATCTTCGTTTCATCTTTAACTTCATTAGAATATGTAAGTTTTGGCAGTCTGTTGATTCAGGGGAAATCTATGGatcta--ttgttttctatttgtctataAGgtccactaatttactttctaagttgttgtttt-----------ggg----------------ttttcaTCAAAGTGATGACATTCCTAGCTCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82706340 356 + 85787240 AAAAGGAAGTTAAACTTCAGACAGTGTGAAACATGTCAGAGTCGTATTTGCATTCTAAATTGCAGTAATGATATAAACATCATTATTCCTAATCTGATCCTGCAGG------------------------------------TGGATCAAATAAGCACGCATCTGTTAAAGAACAGTCT---------------------------------------------GCATGCT---------AGTAAG--TGCACAGGGTCTTGTTACCGAACCTTTCGGTAC-ATCTTCGTTTCATCTTTAACTTCATTAGAATATGTAAGTTTTGGCAGTCTGTTGATTCAGGGGAAATCTATGGATCTA--TTGTTTTCTATTTGTCTATAAGGTCCACTAATTTACTTTCTAAGTTGTTGTTTT-----------GGG----------------TTTTCATCAAAGTGATGACATTCCTAGCTCCT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178903955 345 + 195471971 TAAAGGAAGTGAAA----AACTAATGGGAAAAATGTCAAGACAGTAGTTATATCT--AGCTGTGGTGGGAGTATTGACATTGGTGCTTTTGATCTG--------GA------------------------------------CTGATT-AACAATCTTTCATC------AGACCAGTTT---------------------------------------------GTATGCGT--------GATGCA--TGCTGAAGGTCTTAATGTTGAATCACTAAGCACAACCTTCATAGCATCCCTTACTTTGTTAAAATATGAGATTTTTGGCAGTTCACAGACTCAAGGGACAGCTGTATATATGCCTTTTATTCTATT---------GGTCTACTAATTTGTTCTCTTGGCTGTCTTTTTTTTTTTTTTGAGGGCTC------------TTTTTCTTTAATGTGATGACAATCCTAGTTCCT i mm10.chr1 C 0 C 0 s canFam3.chr7 36493440 455 + 80974532 aaagaGAAGTGAAACTTCAGAAAATGGGGAAAATGTCAAAGTCCTATTTATATTCTAAACTGCAGTAA--ACAATAAAAACATTACTCCTAATCTGGTCCTACAGATTAAACAATGTTAGATTGTCTAACATCTAACAATGTTAGATTAAATAATCTAACATCTAATATTAAACAATCTAACATTAAACAATCTAACATCTAACAATGTTAGATTAAACAATGAGCATGCATCTATTACAGATCAGTCTGCAGAGGATCTTGTTATTGACTCATTAAGCAC-CTCTTGATAGAATCTTAAGCTTCATTAACGTACACAATTTTTGGCAATCTGTGAATTCAGGGGAAAACTTTGGGCCTG-----TTTCCTATTT---TCTAAGGTCTA-TAATTTGCCTTCTAGGTTATTGTTTT-----------TAGTTTTCCCTTGTGTTGTTTTTCATCAAAGTGTTGACTTTCTTAGCTCCC i canFam3.chr7 I 861 C 0 e calJac3.chr19 14421033 0 - 49578535 C a score=1213429.000000 s hg38.chr1_KI270759v1_alt 372683 390 + 425601 GATTATGCTACATTGAATAAAAATAAATGTAGGATTTTCTCCTTTCTGACCTAGAGCTAATAAGTTGTACATATTGGCTGAGTTACTGCAAAGAAAGG--------------GCAAAATGAAAACACAGCTCTTATAGTCAAGGTTcttaggatcttattgagatgagct--------cctcagaatcagccaaacttCAAACATGGAGAGCACGGCCCCCAGTCTGCCAAGTCGGCCCAAGACTACTGACACCTACTGCAAGCAATTAGGGTccaactacaaagttagcaga-----aagagcccacccaagaccactgtcacgtgtga---caactgcatgtttgg-agggttcccaaaacgaccctcaggctc-gtaattctctagagggactcacagaattcacggaaaatactcatg s panTro4.chr1 225131068 390 + 228333871 GATTATGCTACATTGAATAAAAATAAATGTAGGATTTTCTCCTTTTTGACCTAGAGCTAATAAGTCGTACATATTGGCTGAGTTACTGCAAAGAAAGG--------------GCAAAATGAAAACACAGCTCTTATAGTCAAGGTTCTTAGGATCTTATTGAGATGAGCT--------CCTCAGAATCAGCCAAACTTCAAACTTGGAGAGCACGGCCCCCAGTCTGCCAAGTCTGCCCAAGACTACTGACACCAACTGCAAGCAATTAGGGTccaactacaaagttagcaga-----aagagcccacccaagaccactgtcacgtgtga---caactgcatgtttgg-agggttcccaaaaccaccctcaggctc-gtaattctctagagggactcacagaattcacggaaaatactcatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226501866 383 - 229942017 GATTATGCTACATTG------AATAAATGTAGGATTTTCTCCTTTCTGACCTAGAGCTAATAAGTCGTACATATTGGCTGAGTTACTGCAAAGAAAGG--------------GCAAAATGAAAACACAGCTCTTATAGTCAAGGTTCTTAGGATCTTATTGAGACGAGCT--------CCTCAGAATCAGCCAAACTTCAAACTT-TAGAGCACGGACCCCAGTCTGCCAAGACTGCCCAAGACTACTGACACCAACTGCAAGCAATTAGGGTCCAACTACAAAATTAGCAGA-----AACAGCCCACCCAAGACCACTGTCACGTCTGA---CAACTGCAtgtttgg-agggttcccaaaaccaccctcaggctc-gtaattccctagagggactcacaggattcacggaaaatactcatg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140392408 388 - 143122389 GATGATGCTACATTGAATAAAAATAAATGTAGGATTTTCTCCTTTCTGACCTAGAGCTAATAAGTCGTACATATTGGCTGAGTTACTGCAAAGAAAGG--------------GCAAAATGAAAACACATCTCTTATAGTCAAGGTTCTTAGGATCTTATTGAGACGAGCT--------CCTCAGAATCAGCCAAATTTCAAACTTTGAGAGCACGGCCCCCAGTCCGCCAAGTCTGCCCAAGACTACTGACACCAACTGCGAGCAATTAGGGTccaactacaaagttagcaaa-----cagagcccacccaagaccactgtcacgcctga---caaccgcgtgtttgg-ggggttcccaaaaccaccctcaggctt-gtaattccctagagggact--cagaattcatggaaaatactcatg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17093287 373 - 229590362 GATTATGCTACATTGAATAAAAATAAGTATAGGATTTTCTCCTTTCTGACCTAGAGCTCATCAGTCGTACATATTGGCTGAGTTACTACAAAGAAAAG--------------TCAAAATGAAAACACAGCTCTTTCAGTCAAGGTCCTTAGGCTCTTATTGAGAAGAGCT--------CCTCAGAATCAGCCAAACTTCAAACTTTGAGAGCACGGCCCCCAGTCGGCCAAGTCTGCCTAAGACTACTGACACCAACTGCAAGCAATGAGGGTccacctaccaagttagcaga-----aagaggccgcccacgaccactgtcacttccca---caactgcatgtttgg------------------ccttgggctc-gtaactcactagagggactcacagaattcacagaaaatactcatg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223857239 373 - 227556264 GATTATGCTAAATTGAATAAAAATAAGTATAGGATTTTCTCCTTTCTGACCTAGAGCTCATCAGTCGTACATATTGGCTGAGTTACTACAAAGAAAAG--------------TCAAAATGAAAACACAGCTCTTTCAGTCAAGGTCCTTAGGCTCTTATTGAGAAGAGCT--------CCTCAGAATCAGCCAAACTTCAAACTTTGAGAGCACGGCCCCCAGTCGGCCAAGTCTGCCCAAGACTACTGACACCAACTGCAAGCAATGAGGGTccacctaccaagttagcaga-----aagaggccacccccgaccactgtcacttccca---caactgcatgtttgg------------------ccttgggctc-gtaactcactagagggactcacagaattcacagaaaatactcatg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16906859 391 - 220367699 GATTATgctaaattgaataaaaataagtatagGATTTTCTCCTTTCTGACCTAGAGCTCATCAGTCGTTCATATTGGCTGAGTTACTGCaaagaaaag--------------tcaaaatgaaaacacagctcTTTCAGTCAAGGTCCTTAGGCTCTTATTGAGAAGAGCT--------CCTCAGAATCAGCCAAATGTCAAACTTTGAGAGCACGGCCCCCAGTCGGCCAAGTCTGCCCAAGACTACTGACACCAACTGCAAGCAATTAGGGTCCACCTACCAAGTTAGCAGA-----AAGAGGCCACCCACGACCACTGTCACTTCCCA---CAACTGCATGTTTGGAGGGTTTCCCAAAACCACCCTCGGGCTC-GTAACTCACTAGAGGGACTCACAGAATTCACAGAAAATACTCATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82706696 389 + 85787240 GATTATGCTAAATTGAATAAAAATAAGTATAGGATTTTCTCCTTTCTGACCTAGAGCTCATCAGTCGTACATATTGGCTGAGTTACTGCAAAGAAAAG--------------TCAAAATGAAAACACAGCTCTTTCAGTCAAGGTCCATAGGCTCTTATTGAGAAGAGCT--------CCTCAGAATCAGCCAAACTTCAAACTTTGAGAGCACGGCCCCCAATTGGCCAAGTCTGCCCAAGACTACTGACACCAACTGCAAGCAATTAGGGTCCGCCTACCaagttagcaga-----aagaggccacccacgaccactgtcacttcc-----aaactgcatgtttggagggtttcccaaaaccaccctcgggctc-gtaactcactagagggactcacagaattcacagaaaatactcatg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14421033 385 - 49578535 GATTATGCTAAATTGAATAAAAATAAATGTAGGATTTTCTCCTTTCTGACCTAGAGCTAATAAGTCGTACATATTGGCTGAGTTACTGCAAAGAAAGG--------------TCAAAATGGAAACACAGCTCTTACTGTCAGGGTTCTTAGGATCTTGCTGAGAAGAGCT--------CCTCAGAATCAGCCAAACTTCACACTTGGAGAGCACGGCCCCCA-TCTGCCAAGCCTGCCCAAGGCTACTGACACCAGCTGCAAGaaattagggtccaactacaaaggtagcgga-----aaggggccacccaagaccac-gtcacttccgt---c-actgcgtgttcgg-atgcttcccggaacctcccgcaggctc-gtgatttacgagagggactcagagaattccctggaa--actcagg i calJac3.chr19 C 0 C 0 s mm10.chr1 178904300 348 + 195471971 GGTTATGCTGAAGTGAATATTAATGAATGTAG--TCTTTTCTGTTCTTCCCTAAAGCTGTTAAGTCATATGTATTGGCTGGAT------AAATACAGG--------------CT-------AAACACAGTTCCCATTGTGAAGGTTCTTACAGTCTTGTT-AGAAGAGCTGAGAGAAGCCTGAGAG------AGTTTTTAAGGTTTGAGGGCACAGTCTCCAGGATGCT-GTTCTGCCCAAGATTTCTG-------------GTTATTTGGGTTCAAGGATA----TAGGAGATTTAGAAGAGTCTGCACCATACTTCTGGTGC---------CAACTCTGTGGTTAG-CAGGTACCCCAAAACACCATC----------ATTCAGTAGAAGGACTTACAGAACACAGTAAAAGTatccatg i mm10.chr1 C 0 I 1619 s canFam3.chr7 36493895 371 + 80974532 CATCATGCTAAGCAAAGTAAAAATAAATACAGGATCTTTCCCCTTCTGTCACAGAGCTAATATGTCATTAACATTTTCCAAGTTACTGTAAAGAAAGGTTGAAATAAAAAGATCAAAATAAAAGTACAGCTCCAACCCTCAAGGTTCTCAGGATCT----------AGCT--------AGCTGGAATTAGCCACACTGTGGGATTTGAGAGCGTAGTCCTCAAATTGCCAAGTCAGCCCCAGACTTCTG------------------TAGAGTccaactataacattag---------aagagttca--taaagccactctcacttctgacaccaaaggcaagtttgaagggtccccccaaaccacgcgcaagtttagtaattcattaggaagactca-aaaactcactgggaatactg--- i canFam3.chr7 C 0 C 0 a score=376889.000000 s hg38.chr1_KI270759v1_alt 373073 118 + 425601 gctacaatttaatatgttggaaaggagacagattaaaatcagccaaaggaagagacacatggggcagaatctaggacggtttcaaaagggacgcttccattgtcat--------caggacacatta s panTro4.chr1 225131458 118 + 228333871 gctacaatttattatgttggaaaggagacagattaaaatcagccaaaggaagagacacatggggcagaatctaggaaggtttcaaaagggacgcttccattgtcgt--------caggacacatta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226502249 118 - 229942017 gctacaatttattacgttggaaaggagacagattaaaatcagccaaaggaagagacacatggggcagaatctaggaaggttccaaaagggacgcttccattgtcgt--------caggacacatta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140392796 118 - 143122389 gctacaatttattacgttggaaaggagacagattaaagtcagccaaaggaagagacacgtggggcagaatctaggaaggttccaaaagggacacttccattgtctt--------caggacacatta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17093660 118 - 229590362 gctacagtttattacgttggaaaggatacagattaaaatcagccaaaggaagagacacatgggtcagaatctaggaaggttccaaaagggacgcttccactgtctt--------caggacacatta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223857612 118 - 227556264 gctacagtttattacgttggaaaggatacagattaaaatcagccaaaggaagagacacacgggtcagaatctaggaaggttccaaaagggacgcttccactgtctt--------caggacacatta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16907250 118 - 220367699 GCTACAATTTATTACGTTGGaaaggatacagattaaaatcagccaaAGGAAGAGACACATGGGGCAGAATCTAGGAAGGTTCCAAAAGGGACGCTTCCACTGTCTT--------CAGGACACATTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82707085 118 + 85787240 gctacaatttattatgttggaaaggatacagattaaaatcagccaaaggaagagacacatggggcagaatctaggaaggctccaaaagggacgcttccactgtctt--------caggacacatta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14421418 118 - 49578535 gctacagtttattacgctggaaaggttacagattaaaatcagccaaaggaagagacacacggggcagagtcgaggaaggttccaaacgtgacgcttgcgtcgtctt--------caggacatgccg i calJac3.chr19 C 0 I 210 s canFam3.chr7 36494266 109 + 80974532 acaatgattcactaca-gagaaagggtacagatcaaaactagcccaaggaagaggcacatag---------------ggttccaagtgcgaagcttttgttgccctgtcccatccagtcaacatg- i canFam3.chr7 C 0 C 0 e mm10.chr1 178904648 1619 + 195471971 I a score=1359035.000000 s hg38.chr1_KI270759v1_alt 373191 426 + 425601 cattaccttcccggcatccgtgtgtgatggtacacgtggagcactgccaacccaggatgctcacctgagccttg-tatccagagttgttactgtggtttcattacattggcatgattgattgattgatttcccatgtggtctaactcagtctccaggtggactggtactgtgtgaccccaaagcccctgccctaaatcacatggttgatccttctcttgcaaccagcttggaccatatgactatcaggtatg-gcccatcctaccctaagatcttatgtggccaaccctcaccat-aacaaaggcactcccagtgagtatgatgtagtttacctcccagaagctcatggaaaaggccacatctatctttgggaaaggtcaaattttttactacccaAG---CCTGACCTG---AGA---AGTGCTAAA------TTGTGAGGGT s panTro4.chr1 225131576 426 + 228333871 cattaccttcccggcatccgtgtgtgatggtacatgtggagcactgccaacccaggatgctcacctgagccttg-tatccagagttgttactgtggtttcattacactggcatgattgattgattgatttcccatgtggtctaactcagtcttcaggtggactggtactgtgtgaccccaaagcccctgccctaaatcccatggttgatctttctcttgcaaccagcttggaccatatgactatcaggtatg-gcccatcctaccctaagatcttatgtggccaaccctcaccat-aacaaaggcactcccagtgagtatgatgttgtttacctcccagaagctcatggaaaaggccacatctatctttgggcaaggtcaaattttttactacccaAG---CCTGACCTG---AGA---AGTGCTAAA------TTGTGAGGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226502367 429 - 229942017 cattaccttcccggcatccatgtgtgatagtacacgtggagcactgccaagctaggatgctcacctgagccttg-tatccagagttgttactgtggtttcattacactggcatgattgattgattgatttcccatgtggtctaactcagtcttcaggtggactggtactgtgtgaccccaaagcccctgccctaaatcacatggtCGGTCTTCCTCTTGCAACCAGCTTGGATCATATGACTATCAGGTATG-GCCCATCCTACCCTAAGATCTTATGTGGCCAACCCTCACCAT-AACAAAGGCACTCCCAGTGAGTATGATGTAGTTTACCTCCCAGAAGCTCATGGAAAAGGCCACATCTATCTTTGGGCAAGGTCAAATTTTTTACTACCCAAG---CCTGACCTGAGAAGA---AGTGCTAAA------TTGTGAGGGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140392914 430 - 143122389 cattaccttccctgcatccgtgtgtgatagtacacgtggagcactgccaacctaggatgctcacctgagccttg-tgtccagagttgttactgtggtttcattacactggcatgattgattgattgatttcccatgtggtctaactcagtcttcaggtggactggtactgtgtcaccccaaagcccctgccctaaatcacatggttgatctttctcttgcaaccagcttggaccatatgactatcaggtatg-gcccatcctaccctaagatcttatgtggccaaccctcaccttaaacaaaggcactcccaatgagtatgatgtagtttacctcccagaagctcatggaaaaggccagatctatctttgggcaaggtcaaactttttactacccaAG---CCTGACCTAAGAAGA---AGTGCTAAA------TTGTGAGGGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17093778 421 - 229590362 cattaccttgcctgcatccgtgt------gtacgcgtggagcactgcccacctaggaggctcacctgagccctg-tgtccagagttgttattgtggttccattacactggcatgattgatggattgatttcccatgtggtctaactcagtcttcaggttgactggtactgcgtgaccccagagcccctgccctaaatcacatggttgatctttctcttgaaaccagcttggaccataagactatcaggtatg-gcccatcccaccctgagatcttatgtggccaaccctcaccttcagcaaaggcactcccaatgagtgtgatgtagtttacctcccagaagctcatggaaaaggccagatctatctttaggcaaggtcaaattttttactacccaAG---CCTGACCTG---AGA---AGTGCTAAA------TTGTGAGGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223857730 421 - 227556264 cattaccttgcctgcatccgtgt------gtacgcgtggagcactgcccacctagtaggctcacctgagccctg-tgtccagagttgttattgtggttccattacactggcatgattgatggattgatttcccatgtggtctaactcagtcttcaggttgactggtactgcgtgaccccagagcccctgccctaaatcacatggttgatctttctcttgaaaccagcttggaccataagactatcaggtatg-gcccatcccaccctgagatcttatgtggccaaccctcaccttcagcaaaggcactcccaatgagtgtgatgtagtttacctcccagaagctcatggaaaaggccagatctatctttaggcatggtcaaattttttactacccaAG---CCTGACCTG---AGA---AGTGCTAAA------TTGTGAGGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16907368 416 - 220367699 CATTACCTTGCCTGCATCCGCGT------GTGCGCGTGGAGCACTGCCCACCTAGGAGGCTCACCTGA-----G-TGTCCAGGGTTGTTATTGTGGTTCCATTACACTGGCATGATTGATGGGTTGATTTCCCATGTGGTCTAACTCAGTCTTCAGGTTGACTGGTACTGCGTGACCCCAGAGCCCCTGCCCTAAATCACACGGTTGATCTTTCTCTCGCAACCAGCTTGGACCATAAGACTATCAGGGATG-GCCCATCCCACCCTAAGATCTTATGTGGCCAACCCTCACCTTCAGCAAAGGCACTCCCAATGAGTGTGATGTAGTTTACCTCCCAGAAGCTCATGGAAAAGGCCAGATCTATCTTTAGGCAAGGTCACATTTTTTACTACCCAAG---CCTGACCTG---AGA---AGTGCTAAA------TTGTGAGGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82707203 421 + 85787240 cattaccttgcctgcatccgtgt------gtacgcgtggagcactgcccacctaggagcctcacctgagccctg-tgtccagagttgttattgtggttccattacactggcatgattgatgaattgatttcccatgtggtctaactcagtcttcaggttgactggtactgcgtgaccccagagcccctgccctaaatcacatggttgatctttctctcgcaaccagcttggaccataagactctcaggtatg-gcccatcccaccctaagatcttatgtggccaaccctcaccttcagcaaaggcactcccaatgagtgtgatgtagtttacctcccagaagctcatggaaaaggccagatctatctttaggcaaggtcaaattttttactacccaAG---CCTGACCTG---AGA---AGTGCTAAA------TTGTGAGGGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14421746 427 - 49578535 CAtcaccttccctgcatccacgcgtgatggtacacgtggaatactgccaacctaggatgctcacctgagccctg-tgtccagagcggttactgtggttttattacactggcacgatcgatggtttgacttcctatgtggtttaactcagtcttcaggttgactggtaccgtgtgaccccaaagcccctgccctaaatcacatggttgatctttttcttgcagccagcttggcctgtaagacaatcacgtatgcccccgccccaccctaagacctgatgtggccaaccctcacctt-aaacaaggctctcccagtgagttggatgtagttcacctcc---aagctcatggagaaggccagatctatctttggacaaggccaaagtttttaccacccaAG---TCTGACCAG---AGACATAGTGCTAAA------CTGTGAGGGT i calJac3.chr19 I 210 C 0 s canFam3.chr7 36494375 419 + 80974532 ggttactctcccagtgtctgtgtgtgacagtaagcac-aagtattgcc-acccagaaagctcacttgagctttgatgtgcagagtttttattgggggtacattctataggcatgattga----ttgatttcccacatggttgcacgtggtctacaggttaactcatactgcatgg-tccaaagtccctgacctaaatcacacggttggtctttgtggtgtggtcagaccccaccctaagactgtcaggtgtt-tcccttt---------gatctggtatagccaatccctgccctaaacaaagacccttctaacaagtatgacatagattatctcccagaggctgaggacaaagactagacc--tctttggccaaagccatattctctacaacacaAGAACTCTGAGCAG---AGA---GGAAGTAGGTGGATTTTGTGGTAGT i canFam3.chr7 C 0 C 0 e mm10.chr1 178904648 1619 + 195471971 I a score=398699.000000 s hg38.chr1_KI270759v1_alt 373617 117 + 425601 GGAA--AGGGGCTAGTGTGAGCTTGGATG---AACGAAGTATCTG-AAGAGCAATGGAAGGAACATGGAATGTTCTTAAACAACAGAACATTTTTAGGACCATAGAGTATTGGAGTTGAAAGA s panTro4.chr1 225132002 117 + 228333871 GGAA--AGGGGCTAGTGTGAGCTTGGATG---AACTAAGTATCTG-AAGAGCAATGGAAGGAACATGGAGTGTTCTTAAACAACAGAACATTTTTAGGACCATAGAGTATTGGAGTTGAAAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226502796 120 - 229942017 GGAA--AGGGGCTAGTGTGAGCTTGGATGGCCAACTAAATATCTG-AAGAGCAATGGAAGGAACATGGAATGTTCTTCAACATCAGAACATTTTTAGGACCATAGAGTATTGGAGTTGAAAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140393344 120 - 143122389 GGAA--AGGGGCTAGTGTGAGCTTGGATGGTGAACTAAATATCCA-AAGAGCAATGGAAGGAACATGGAATATTCTTAAACAACAGAACATTTTTAGGACCATAGAGTATTGGAGTTGAAAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17094199 119 - 229590362 GGAA--AGGGGCTAGTGTGAGCTTGGATGGTGAACTAAGTATCTG-AAGAGCAATGGAAGGAACATGGAATGTTCTTAAGCAACAGAACATTTGTAGGACCATAGAGTATTAGAGTTGAAA-A i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223858151 119 - 227556264 GGAA--AGGGGCTAGTGTGAGCTTGGATGGTGAACTAAGTATCTG-AAGAGCAATGGAAGGAACATGGAATGTTCTTAAGCAACAGAACATTTGTAGGACCATAGAGTATTAGAGTTGAAA-A i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16907784 120 - 220367699 GGAA--AGGGGCTAGTGTGAGCTTGGATGGTGAACTAAATATCTG-AAGAGCAATGGAaggaacatggaatgttcttaaGCAACAGAACATTTGTAGGACCATAGAGTATTAGAGTTGAAAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82707624 120 + 85787240 GGAA--AGGGGCTAGTGTAAGCTTGGATGGTGAACTAAATAACTG-AAGAGCAATGGAAGGAACATGGAATGTTCTTAAGCAACAGAACATTTGTAGGACCATAGAGTATTAGAGTTGAAAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14422173 119 - 49578535 GGAA--AGGGGCCAGTGTGAGCTGGGATGGCGAACCAAGTATCTG-AAGAGCAATGGAAGGAACATGGAATGTTCTTAAGCAACGGAACATGTTTA-GACCACAGAGTATTAGAGCTGAAAGA i calJac3.chr19 C 0 I 299 s mm10.chr1 178906267 90 + 195471971 GGGA--AGGGCTTATTGTGAGCTTCAGTGACCAGCCAAACATTTGAAAgagcaacagaaagaaaactgagtgtgcttaagcaacagaaccct------------------------------- i mm10.chr1 I 1619 C 0 s canFam3.chr7 36494794 95 + 80974532 GGAAGTAGGGCTTAAGGTGAGCTTGGTTGACCACTGAAATGTTtg-aagagcaacagaaggcctatggaatattcccaaacaagagaac--ttttaag------------------------- i canFam3.chr7 C 0 C 0 a score=28182.000000 s hg38.chr1_KI270759v1_alt 373734 11 + 425601 ATTTGGGAGAT s panTro4.chr1 225132119 11 + 228333871 ATTTGGGAGAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226502916 11 - 229942017 ATTTGGGAGGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140393464 11 - 143122389 ATTTGGGAGAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17094318 11 - 229590362 ATTTGGGAGAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223858270 11 - 227556264 ATTTGGGAGAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16907904 11 - 220367699 ATTTGGGAGAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82707744 11 + 85787240 ATTTGGGAGAT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178906357 0 + 195471971 C e canFam3.chr7 36494889 0 + 80974532 C e calJac3.chr19 14422292 299 - 49578535 I a score=1574654.000000 s hg38.chr1_KI270759v1_alt 373745 482 + 425601 TATTGCATTTCTTAATAAGAGCACTGCCATGCAGAAGTGGCCTTGTCTTGGTAACATGATagaagcacatgataactgtc-----------------------------tttaaagtgtgaggggcccatgtgagcaacagggtttatttttaccccatataatcctagagaacaaagccagtggccatgggttagaagttattaaaaagaagatttaagtttaatagaagaaagagctttctaataattgaggctattc-agaatattacacaggctgtactg-ggagatggtaagtt---ctcccaagttaaaaatattcaa-gcagaaagcagatcacctgttaccatggcagtgc-ttttattaggaaatgcaataatctccc-----a-aattctttcaagtctaatactctgtggccctaAAAAGA-GTTTTCAATCTTGA--CAGAATTGTATTCTGGAATTAGTGGACTATTT------CTTTCATAAGTC--ATTATGTGAATTACCTTGAA--AATTTCTAATATCG s panTro4.chr1 225132130 482 + 228333871 TATTGCATTTCTTAATAAGAGCACTGCCATGCAGAAGTGGCCTTGTCTTGGTAACATGATagaagcacgtgataactgtc-----------------------------tttaaagtgtgaggggcccgtgtgagcaacagggattatttttaccccatataatcctagagaacaaagctagtggccatgggttagaagttattaaaaagaagatttaagtttaatagaagaaagagctttctaataattgaggctattc-agaatattacacaggctgtactg-ggagatggtaagtt---ctcccaagttaaaaatattcaa-gcagaaagcagatcacctgttaccatggcagtgc-ttttattaggaaatgcaataatctccc-----a-aattctttcaagtctaatactctgtggccctaAAAAGA-GTTTTCAATCTTGA--CAGAATTGTATTCTGGAATTAGTGGACTATTT------CTTTCATAAGTC--ATTATGTGAATTACCTTGAA--AATTTCTGATATCG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226502927 510 - 229942017 TATTGCATTTCTTAATAAGAGCACTGCCATGCAGAAGTGGCCTTGTCTCGGTAACATGATAGAAGCACATGATAACTGTCTTttagatagaagcacatgataactgtcttttaaagtgtgaggggcccgtgtgagcaacagggattatttttaccccatataatcctagagaacatagctagtgcccatgggttagaagttattaaaaagaagatttaagtttaatagaagaaagagctttctaataattga-gctattc-agaatattacacaggctgtactg-ggagatggtaagtt---ctcccaagttaaaaatattcaa-gcagaaagcagatcacctgttaccatggcagtgc-tcttattaggaaatgcaataatctccc-----a-aattctttcaactctaatactctgtggccctaAAAAGA-GTTTTCAATCGTGA--CAGAATTGTATTCTAGAATTAGTGGACTATTT------CTTTCATAAGTC--ATTATGTGAATTACCTTGAA--AATTTCTGATATCG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140393475 477 - 143122389 TATTGCATTTCTTAATAAGAGCACTGCCCTGCAGAAGTGGCCTTGTCTCGGTAACATGATagaagcacatgataactgtc----------------------------ttttaaagtgtgaggggcccgtgtgagcaacagggattatttttaccccatatagtcctagagaacaaagctagtgcccatgggttggaagttattaaaaagaagatttaatt------gaagaaagagctttataataattgaggctattc-agaatattacacaggctatcctg-ggagacggtaagtt---ctcccaagttaaaaatattcaa-gcagaaagcagatcacctgttaccatggcagtgc-ttttattaggaaatgcaacaatctccc-----a-aattctttcaactctaatactctgtggctctaAAAAGA-GTTTTCAATCTTGA--CAGAATTGTATTCTGGAATTAGTGGACTATTT------CTTTCATAAGTC--ATTATGTGAATTACCTTGAA--AATTTCTGCTATCG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17094329 484 - 229590362 TACTGCATTTCTTAATAAGCGCACGGCCATGCAGAAGTGGCCTTGTCTCGGTAACATGATagaagcacatgataaccgtc----------------------------ttgtcaagtgtgaggagcctgtgtgagcaacagggatgatttttaccccatacaatcctagagaacaaagctagtgcccatgggttagaagttattaaaaagaagatttaagtttaatagaaggaagagctttctaataataaagactattc-agaatattacacagcctgtcctg-ggagatggtacgtt---ctcccaagttaaaaatattcaa-gcagaaagcagagcacctgttaccatggcagtgcgttttattaggaaatacaataatctccc-----a-aattctttcaactctaatactctgtggccctaAACAGA-GTTTTCAATCTTGA--CAGAATTGTATTCTGGAATTAGTGGACTATTT------CTTTGATAAGTC--ATTATGTGAGTTACCTTGAA--AATTTCTGATATCg i rheMac3.chr1 C 0 I 304 s macFas5.chr1 223858281 484 - 227556264 TACTGCATTTCTTAATAAGCGCACGGCCATGCAGAAGTGGCCTTGTCTCGGTAACATGATagaagcacatgataaccgtc----------------------------ttgtcaagtgtgaggagcctgtgtgagcaacagggatgatttttaccccatacaatcctagagaacaaagctagtgcccatgggttagaagttattaaaaagaagatttaagtttaatagaaggaagagctttctaataataaagactattc-agaatattacacagcctgtcctg-ggagatggtacgtt---ctcccaagttaaaaatattcaa-gcagaaagcagagcacctgttaccatggcagtgcgttttattaggaaatacaataatctccc-----a-aattctttcaactctaatactctgtggccctaAACAGA-GTTTTCAATCTTGA--CAGAATTGTATTCTGGAATTAGTGGACTATTT------CTTTCATAAGTC--ATTATGTGAGTTACCTTGAA--AATTTCTGATATCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16907915 483 - 220367699 TACTGCATTTCTTAATAAGAGCACGGCCATGCAGAAGTGGCCTTGTCTCGGTAACATGATAGAAACACATGATAACTGTC----------------------------CTGTCAAGTGTGAGGGGCCTGTGTGAGCAACAGGGATTATTTTTACCCCGTACAATCCTAGAGAACAAAGCTAGTGCCCATGGGTTAGAagttattaaaaagaagattTTAGTTTAATAGAAGGAAGAGCTTTCTAATAATAAAGACTATTC-AGAATATTACACAGGCTGTCCTG-GGAGATGGTACGTT---CTcccaattt-aaaatattcaa-gcaGAAAGCAGAGCGCCTGTTACCATGGCAGTGCTTTTTATTAGGAAATACAATAATATCCC-----A-AATTCTTTCAACTCTAATACTCTGTGGCCCTAAACAGA-GTTTTCAATCTTGA--CAGAATTGTATTCTGGAATTAGTGGACTATTT------CTTTCATAAGTC--ATTATGTGAGTTACCTTGAA--AATTTCTGATATCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82707755 484 + 85787240 TACTGCATTTCTTAATAAGAGCACGGCCATGCAGAAGTGGCCTTGTCTCGGTAACATGATagaagcacatgataactgtc----------------------------ttgtcaagtgtgaggggcctgtgtgagcaacagggattatttttactccatacaatcctagagaacaaagctagtgcccatgggttagaagttattaaaaagaagatttaagtttaatagaaggaagagctttctaataataaagactattc-agaatattacacaggctgtcctg-ggagatggtacgtt---ctcccaagttaaaaatattcaa-gcagaaagcagagcacctgttaccatggcagtgctttttattaggaaatacaataatctccc-----a-aattctttcaactctaatactctgtggccctaAACAGA-GTTTTCAGTCTTGA--CAGAATTGTATTCTGGAATTAGTGGACTATTT------CTTTCATAAGTC--ATTATGGGAGTTACCTTGAA--AATTTCTGATATCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14422591 439 - 49578535 TACTGCATTTCTTAATAAGGGCACTGCCATACGGAGGTGGTCTTGTCTCAGTAACATGATAGg---atatgataactgtc----------------------------ctttaaagtgtgaggggccagtgtgagcaacagggactatttttaccccatataatcctagagcacaaagctagtgcccatggcttagaagccattttaaa-aagatttcagtttaatataagagaaa-----------------------------------------tgtcctg-ggagatggtaagtt---ctcccaagttaaaaatactcaa-gcagaaagcagattacctgttaccatggCAGTAC-TTTTATTAGGAAATGCAATAATCTCCC-----A-AATTCTTTCCACTCTAATACTCAGTGGCCCTAAAAATC-GTCTTCAATCTTGA--CAGAATTGTATTCTGGAATTAGCAGACCATTT------CTTTGTTAAGTC--ATTATGTGAATTACCTCTAC--AATTTCTGATATCA i calJac3.chr19 I 299 C 0 s mm10.chr1 178906357 411 + 195471971 ------------------------------------------------------caggaaaga-------cataagtgtg-----------------------------tctaaaa------------atgtgagcaat-gggcttgtttttaccctgtatgagcccagaggacagagctagtgaccttcactt-gatgttgt------gaagactgaagtcaaacataaggaaaagacttctaata----aggcta-tc-tgaaaaatatacagactgcactgcaaagatagtaagccccACCCCCCAGTTGAAAATCATCGCTACACAAAGCATGGCATCCAAAACCATGGCGATCC-TTTTCTTAGGAAATGCAAAGACCTCCCTCCAAG-AATCCTTTTGACTCTATTTCTTTATGCTTATATCAATATGTTTTCCATCTTGACCCATGGTTGTATTCTGGAGTTGGTAAACTATTTACGTTCTGTTTCTGAGTC------TATGGATTGTCTTTCA--AATTTCTGAGGTAG i mm10.chr1 C 0 C 0 s canFam3.chr7 36494889 409 + 80974532 -------------------------------------------------------------gaaggatatgataaatacc----------------------------atttaaaatgtgaagggacagtgtgtgc-acaaggattattcttacccagtatgcacctagaatacaggg--agtgcccatgg-ttagaagc----ataaggaagatttaagttcagtataagaaaaagccttctgataattgaggctattcaaaaatattacacaggctgcccca-ggagttggtaagtt---ctcagtcattaaaaatattctg-gcagaaagcagatcagctgctacagtggcagttc--tttgcaaggaaatgcaatgacccctg-----agaaccctttcaactgtgattctctgtgcttctaAAAATA-TTGTTCAACC-TGACTCAGA--------CTGGAATCTGTGGACTGTCT------CTACTGTGATTCTCATTGTATGAATTACCTTAAAGTACTTTATGGCA--- i canFam3.chr7 C 0 C 0 a score=314979.000000 s hg38.chr1_KI270759v1_alt 374227 86 + 425601 TACCTGAGTGCCATGGCCTTGGCATGAATATACA-CTTCCTGAGCAGAACTTAAGAATGAGAATATCTGGAGTAATTCAGGTTCTGC s panTro4.chr1 225132612 86 + 228333871 TACCTGAGTGCCATGGCCTTGGCATGAATATACA-CTTCCTGAGCAGAACTTAAGAATGAGAATATCTGGAGTAATTCAGATTCTGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226503437 86 - 229942017 TACCTGAGTGCCATGGCCTTGGCATGACTATACA-CTTCCTGAGCAGAACTTAAGAATTACAATATCTAGAGTAATTCAGAGTCTAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140393952 86 - 143122389 TACCTGAGTGCCATGGCCTTGGCATGAATATACA-CTTCCTGAGCAGAACTTAAGAATGAGAATATCTAGAGTAATTCAGATCCTAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17095117 86 - 229590362 TACCTGAGTGCCATGGCCTTGACATGAATATGCA-TTTCCTGAGCAGAACTTAAGAATTAGAATATCCAGAGTAATTCAGATTCTAC i rheMac3.chr1 I 304 C 0 s macFas5.chr1 223858765 86 - 227556264 TACCTGAGTGCCATGGCCTTGACATGAATATGCA-TTTCCTGAGCAGAACTTAAGAATTAGAATATCCAGAGTAATTCAGATTCTAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16908398 86 - 220367699 TACCTGAGTGCCATGGCCTTGACATGAATATGCA-TTTCCTGAGCAGAACTTAAGAATTAGAATATCCAGAGTAATTCAGATTCTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82708239 86 + 85787240 TACCTGAGTGCCATGGCCTTGACATGAATATGCA-TTTCCTGAGCAGAACTTAAGAATTAGAATATCCAGAGTAATTCAGATTCTCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14423030 84 - 49578535 CACCTGAGTGCTATGGCCTTGGCATGAATATACA-TTTCCTGGGCACAACTT--GAGTTCAAATATCTGGAGTAACTCAGGTTGTAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178906768 82 + 195471971 TACCTGGGTGCCAGGGCTGTGGAGTGAGTG---A-TACTCTGAGCAG-ACTGTAGATATATGATATCTAGAGTAATTTAGATTCTAC i mm10.chr1 C 0 I 3751 s canFam3.chr7 36495298 80 + 80974532 TCCCTGTGTGCTACAGCCTTGGAATGAATGTACATTTTCCAGAGTGGAACCT-------AGAATATCTGGGGCAATTCAGATTCTAC i canFam3.chr7 C 0 C 0 a score=132518.000000 s hg38.chr1_KI270759v1_alt 374313 51 + 425601 TAATTCTGCATGGTTGTCACTGCGATGA----TGTTCATTGTTCTAGGTAAGAAG-------------- s panTro4.chr1 225132698 51 + 228333871 TAATTCTGCATGGTTGTCACTGCGATGA----TGTTCATTGTTCTAGGTAAGAAG-------------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226503523 51 - 229942017 TAATTCTGCTTGGTTATCACTGAGATGA----TGTTCATTGTTCTAGATAAGAAG-------------- i ponAbe2.chr1 C 0 I 4 s nomLeu3.chr5 140394038 44 - 143122389 TAATTCTGCATGGTTATCACTGAGATGA-----------TGTTCTAGATAAGAAG-------------- i nomLeu3.chr5 C 0 I 4 s rheMac3.chr1 17095203 51 - 229590362 TAGTTCTGCATGGTTATCACAGAGATGA----TATTCATTGTTCTAGATAAGAAG-------------- i rheMac3.chr1 C 0 I 4 s macFas5.chr1 223858851 51 - 227556264 TAGTTCTGCATGGTTATCACAGAGATGA----TATTCATTGTTCTAGATAAGAAG-------------- i macFas5.chr1 C 0 I 4 s papAnu2.chr1 16908484 48 - 220367699 TAGTTCTGCATGGTTATCACAGAGATGA----TATTCATTGTTCTAGAT---AAG-------------- i papAnu2.chr1 C 0 I 4 s chlSab2.chr25 82708325 51 + 85787240 TAGTTCTGCATGGCTATCACAGAGATGA----TACTCATTGTTCTAGATAAGAAG-------------- i chlSab2.chr25 C 0 I 4 s calJac3.chr19 14423114 48 - 49578535 TGATTCTGCATGGCTGTCACTGAGATGA-------TCACTGTTCTAGATAAGAAG-------------- i calJac3.chr19 C 0 I 316 s canFam3.chr7 36495378 69 + 80974532 TAATTCTGAGTGGTCTGCAACTCAATGGAAGTTTTTCCTTGCTCTAGATGAGAGTCTTGAGTTGTTAAG i canFam3.chr7 C 0 C 0 e mm10.chr1 178906850 3751 + 195471971 I a score=395505.000000 s hg38.chr1_KI270759v1_alt 374364 136 + 425601 GATAAATGAGTAAT------AAAAGTT-TCATGGGACACATAT---------AAGTGAACTCATGTTTTATATCCACTTCAGTCATTCATTGCAAGCGAGTCTTGT-TCAATGAGATCAA-----------------------------------AGCAGA---------TTGGTTAGGATTTTGA-CTTGAAACCTT s panTro4.chr1 225132749 132 + 228333871 GATAAATGGGTAAT------AAAAGTT-TCATGGGACACATAT---------AAGTGAACTCATGTTTTATATCCACTTCAG----TCATTGCAAGCGAGTCTTGT-TCAATGAGATCAA-----------------------------------AGCAGA---------TTGGTTAGGATTTTGA-CTTGAAACCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226503578 132 - 229942017 GATCAATGAGTAAT------AAAAGTT-TCATGGGACACATAT---------AAGTGAACTCATGTTTTATATCCACTTCAG----TCATTGCAAGTGAGTCTTGT-TCAATGAGATCAA-----------------------------------AGCAGA---------TTGGTTAGGATTTTGA-CTTGAAACCTT i ponAbe2.chr1 I 4 C 0 s nomLeu3.chr5 140394086 125 - 143122389 GATAAATGAGTAAT------AAAAGTT-TCATGGGACACATAT---------AAGTGAACTCATGTTTTATATCCACTTCAG----TCATTGCAAGCAAGTCTTGT-TCAATGAGATCAA-----------------------------------AGCAGA---------TTGG-------TTTGA-CTTGAAACCTT i nomLeu3.chr5 I 4 C 0 s rheMac3.chr1 17095258 133 - 229590362 GATAAATGAGTAAT------AAAAGTTCTCATGGGACACATAT---------AAGTGAACTCATGTTTTATATTCACTTCAG----TCATTGCAGGCGAGTCTTGT-TCAATGAGATCAA-----------------------------------AGCAGA---------TTGGTTAGGATTTTAA-CTTGAAACCTT i rheMac3.chr1 I 4 C 0 s macFas5.chr1 223858906 133 - 227556264 GATAAATGAGTAAT------AAAAGTTCTCATGGGACACATAT---------AAGTGAACTCATGTTTTATATTCACTTCAG----TCATTGCAGGCGAGTCTTGT-TCAATGAGATCAA-----------------------------------AGCAGA---------TTGGTTAGGATTTTAA-CTTGAAACCTT i macFas5.chr1 I 4 C 0 s papAnu2.chr1 16908536 133 - 220367699 GATAAATGAGTAAT------AAAAGTTCTCATGGGACACATAT---------AAGTGAACTCATGTTTTATATTCACTTCAG----TCATTGCAGGCGAGTCTTGT-TCAATGAGATCAA-----------------------------------AGCAGA---------TTGGTTAGGATTTTAA-CTTGAAAcctt i papAnu2.chr1 I 4 C 0 s chlSab2.chr25 82708380 133 + 85787240 GATAAATGAGTAAT------AAAAGTTCTCATGGGACACATAT---------AAGTGAACTCATGTTTTATATTCACTTCAG----TCATTGCAGGCGAGTCTTGT-TCAATGAGATCAA-----------------------------------AGCAGA---------TTGGTTAGGATTTTAA-CTTGAAACCTT i chlSab2.chr25 I 4 C 0 s calJac3.chr19 14423478 130 - 49578535 GACAAATGAACAAT------AAAAGTTTTCATGGGACACACTT---------GACTGAAC-CATGTTTCATATCCACTTGAG----TCACTGCAAGCGAGTCTTGTGTGAATGGGATCAA-----------------------------------AGCAGA---------CTGGTTAGGATTTTAA-CTTGAAAC--- i calJac3.chr19 I 316 C 0 s canFam3.chr7 36495447 191 + 80974532 --GAAGTGAATAACATACAAAAAAGTTTTCACACAACATATTTAGCTTCTGAAAGTGAAGCCATGTGTTATGATCAGTTCAG----TCATTTCAAATATGtctttt-taaaaaagatttatttatttgacagaaggagagagaattgggaggaggagcagagggaagagcctggtgcggggctcgatcttgtgaccct i canFam3.chr7 C 0 I 87 e mm10.chr1 178906850 3751 + 195471971 I a score=274625.000000 s hg38.chr1_KI270759v1_alt 374500 90 + 425601 CTGTTATTTATAAATTGGAGTTACATCATATATTTCTTCTAAAAGATTCTATTGAGACTGTTTGCTGTCTACAGCTGGTCTTTCTCCAGA s panTro4.chr1 225132881 85 + 228333871 CTGTTATTTATAAATTGGAGTT-----ATATATTTCTCCTAAAAGATTCTATTGAGACTGTTTGCTGTCTACAGCTGGTCTTTCTCCAGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226503710 90 - 229942017 CTGTTATTTATAAATTGGAGTTACATCATATATTTCTCCTAAAAGATTCTATTGAGACTGTTTGCTGTCTACAGCTGGTCTTTCTCAAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140394211 90 - 143122389 CTGTTATTTATAAATTGGAGTTACATCATATATTTCTCCTAAAAGATTCTATTGAGACTGTTTGCTGTCTACATCTGGTCTTTCTCAAGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17095391 90 - 229590362 CTGTTATTTATAAATTTGAGTTACATCATATATTTCTCCTAAAAGGTTCTATTGAGACTGTTTGCTGTCTACAGCTGGTCTTCCTCAAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223859039 90 - 227556264 CTGTTATTTATAAATTTGAGTTACATCATATATTTCTCCTAAAAGGTTCTATTGAGACTGTTTGCTGTCTACAGCTGGTCTTCCTCAAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16908669 90 - 220367699 ctgttatttataaatttgagTTACATCATATATTTCTCCTAAAAGGTTCTATTGAGACTGTTTGCTGTCTACAGCTGGTCTTCCTCAAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82708513 90 + 85787240 CTGTTATTTATAAATTTGAGTTACATCATATATTTCTCCTAAAAGGTTCTATTGAGACTGTTTGCTGTCTACAGCTGGTCTTCCTCAAGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14423608 90 - 49578535 CTGTTATTTATAAATTTGAGTTACATCATATACTTCTCCTAAAAGAACCTATTGAGACTGTTCGCTATCTACAGCTGGTCTTTCTCAGGA i calJac3.chr19 C 0 C 0 e mm10.chr1 178906850 3751 + 195471971 I e canFam3.chr7 36495638 87 + 80974532 I a score=1306073.000000 s hg38.chr1_KI270759v1_alt 374590 406 + 425601 AGTAGGTTGAATTGCCATGAATTTTATCTTATTCAGATAAATAGAATGCTGGTATCTAGGATCCAATAGATTCATGTGGCCCAAATTTCATCCAGACTTCATCCTCCTCTGTGTACAGTGGC-AACTATTAAAATCATAACAGAGACTT-GTTGGCTCCAGCCCATACTTGCAATGTAAAACCTCCACTTGG-----------------------TGCAAACT--CTTTCCATCCAG-TATTTTCTGATGTCCCTGAGGGCTCTCATGAATGCTCATCACACGTCTCCTCCTGGAAACAAC--TGCTGCTTCACCAAGAATCGCAGGCCCC-ACGGGGAACCATCACTTCTCTCCTGCCTGTC-ACTGGGCACAGCCACCAACATTCCAGAGCCATCATGGTGCCAGCCCCAAATGACCAGGATGGTgt-cgggaagaa--------------------------------------------------------------------------- s panTro4.chr1 225132966 406 + 228333871 AGTAGGTTGAATTGCCATGAATTTTATCTTATTCAGATAAATAGAATGCTGGTATCTAGGATCCAATAGATTCATGTGGCCCAAATTTCATCCAGACTTCATCTTCCTCTGTGTACAGTGGC-AACTATTAAAATCATAACAGAGACTT-GTTGGCTCCAGCCCATACTTGCAACGTAAAACCTCCACTCGG-----------------------TGCAAACT--CTTTCCATCCAG-TATTTTCTGATGTCCCTGAGGGCTCTCATGAATGCTCATCACACGTCTCCTCCTGGAAACAAC--TGCTGCTTCACCAAGAATCGCAGGCCCC-ACGGGGAACCATCGCTTCTCTCCTGCCTGTC-ACTGGGCACAGCCACCAACGTTCCAGAGCCATCATGGTGCCAGCCCCAAATGACCAGGATGGTgt-ggggaagaa--------------------------------------------------------------------------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226503800 402 - 229942017 AGTAGGTTGAATTGCCATGAATTTTATCTTATTCAGATAAATAGAACGCTGGTATCTAGGATCCAATGGATTCATGTGGCCCAAATTTCATCCAGACTTCATCCTCCTCTGTGTACAGTGGT-AACTATTAAAGTCATAACAGAGACTT-GTTGGCTGCAGCCCATACTTGCAACGTAAAACCTCCACTTGG-----------------------TGCAAACT--CTTTCCATCCAG-TATTTTCTGATGTCCCTGAGGGCTCTCATGAATGCTCATCACACGTCTCCTCCTGGAAACAAC--TGCTGCTTCACCAAGAATCGCAGGCCCC-ATGGGGAACCATCACTTCCCT----CCTGTC-ACTGGGCACAGCCACCAACGTTCCAGAGCCATCATGGTGCCAGCCCCAAATGACAAGGATGGTGT-GGGGAAGAG--------------------------------------------------------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140394301 406 - 143122389 AGTAGGTTGAATTGCCATGAATTTTATCTTATTCAGATAAATAGAATGCTGGTATCTAGGATCCAATGGATTCAtgtggcccaaatttcatccagacttcatccccctctgtgtacaatttt-aactattaaagtcataacagagactt-gttggctccagcccatacttgcaacgtaaaacctccacttgg-----------------------tgcaaact--ctttccatccag-tattttctgatgtccctgagggctctcacgaatgctcaTCACATGTCTCCTCCTGGAAACAAC--TGCTGCTTCACCAAGAATCGCAGGCCCC-ATGGGGAACCATCACTTCTCTCCTGCCTGTC-ACTGGGCACAGCCaccaatgttccagagccatcatggtgccagccccaaatgaccaggatggtgt-ggggaagaa--------------------------------------------------------------------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17095481 406 - 229590362 AGTAGGTTGAATTGCCATGAATTTTATCTTATTCAGATAAGTAGAATGCTGGTATCTAGGATCCAGTGGATTCATGCGGcctgaatttcatccagacttcatcctcctctgcgtacagtggt-aactattaaagtcataactgagacct-gctggctccagcccacacttgcaacataaaacctccacttgg-----------------------tgcaaact--ctttctatccag-tattttccgatgtccctgagggctctcatgaatgctcaTCACACGTGTCCTCCTGGAAACAAC--TGCTGCTTCACCAAGAATAGCA-GCGCC-ATGGGGAACCATCACTTCTTTCCTGCCTGTCAACTGGGCACAGCCACCAACGTTCCAGAGCCATCATGGTGCCAGCTCCGAATGACCAGGATGATGT-GGGGAAGAA--------------------------------------------------------------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223859129 406 - 227556264 AGTAGGTTGAATTGCCATGAATTTTATCTTATTCAGATAAGTAGAATGCTGGTATCTAGGATCCAGTGGATTCATGCGGCCCGAATTTCATCCAGACTTCATCCTCCTCTGTCTACAGTGGT-AACTATTAAAGTCATAACTGAGACCT-GTTGGCTCCAGCCCACACTTGCAACATAAAACCTCCACTTGG-----------------------TGCAAACT--CTTTCTATCCAG-TATTTTCCGATGTCCCTGAGGGCTCTCATGAATGCTCATCACACGTGTCCTCCTGGAAACAAC--TGCTGCTTCACCAAGAATAGCA-GCGCC-ATGGGGAACCATCACTTCTTTCCTGCCTGTCAACTGGGCACAGCCACCAACGTTCCAGAGCCATCATGGTGCCAGCTCCGAATGACCAGGATGATGT-GGGGAAGAA--------------------------------------------------------------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16908759 406 - 220367699 AGTAGGTTGAATTGCCGTGAATTTTATCTTATTCAGATAAGTAGAATGCTGGTATCTAGGATCCAGTGAATTCATGTGGCCCGAATTTCATCCAGACTTCATCCTCCTCTGTGTACAGTGGT-AACTATTAAAGTCATAACTGAGACTT-GTTGGCTCCAGCCCATACTTGCAACATAAAACCTCCACTTGG-----------------------TGCAAACT--CTTTCTATCCAG-TATTTTCCGATGTCCCTGAGGGCTCTCATGAATGCTCATCACACGTGTCCTCCTGGAAACAAC--TGCTGCCTCACCAAGAATAGCA-GCGCC-ATGGGGAACTATCACTTCTCTCCTGCCTGTCAACTGGGCACAGCCACCAACGTTCCAGAGCCATCATGGTGCCAGCTCCAAATGACCAGGATGATGT-GGGGAAGAA--------------------------------------------------------------------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82708603 406 + 85787240 AGTAGGTTGAATTGCCATGAATTTTATCTTATTCAGATAAGTAGAATGCTGGTATCTAGGATCCAGTGGATTCATGTGGCCTGAATTTCATCCAGACTTCATCCTCCTCTGTGTACAATGGT-AACTATTAAAGTCATAACTGAGACTT-CTTGGCTCCAGCCCATACTTGCAACATAAAACTTCCACTTGG-----------------------TGCAAACT--CTTTCTATCCAG-TATTTTCTGATGTCCCTGAGGGCTCTCATGAATGCTCATCACACGTGTCCTCCTGGAAACAAC--TGCTGCTTCACCAAGAATAGCA-GCCCC-ATGGGGAACCATCACTTCTCTCCTGCCTGTCAACTGGGCACAGCCACCAACGTTCCAGGGCCATCATGGTGCCAGCTCCAAATGACCAGGATGATGT-GGGGAAGAA--------------------------------------------------------------------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14423698 424 - 49578535 AGTAGGTTGAATTGCCATGAACTTTATCTTATTCAGATAAATAGAATGCCGGCATCTAGGATCAGATGGATCCCTGAGGCCCAGGTTTCATCCAGACTTCATTCTCCTCTGTGTACAGCAGC-AACTACTAAAG---TAACTCAGACTT-GATGGCT-CAGCCCGCACTTGCAATGTGCAGCCTCTGCTCTGTGCAGTGCGCAGCCTCTGCTCTATGCAAACT--CTTGA-ATCCAG-TATTTCCTGCTGTTCCTGA--GCTCTCCCGAATGCTCAGCACACGTCTCTTCCTGGAAACAAT--TACTGCGTCACCAAGAACAGCAGGCCCCTGTGGGGCACCACTGAGACTCTCCTACCTCTC-ACTGGGCACAGCCACCAACGTTCCAGAGCCACCATGGTGCCAGCCCTCAATAACCAGGATGGTGTGGGGGAAGCA--------------------------------------------------------------------------- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36495725 483 + 80974532 GGCAGGTTGACTTAATGTGGATTTTATCTTATTCAGATAAATAGGACACTGATACCCAGGGTAAGACGGATTCATGGAGCCCAGATTTCCT-TAGACTTCATCTTCCTATGTGGACAGTGGTAAACTATTGAAGTCATAAAGCAGGTTTCATTGGCCCCAACCCATACATTCAGTGTAAAGCCTTTAGATTA-----------------------TGTGAACTGGCTTTCCATCCAGATCGTTTCCAATGTCCC-----ATTCTCGTGAATGCCTGTCACATGCCTCATCCTGCCAGGGACAGTGCTGCTTCACTTACAATAGCAGGCCCCTGTGGGGCACCAGCCCTTCTTTCCCGCCTCCC-ATGGGGCACTGCCACCAAAGTTCTAGAGCCACCATGGTGTCAGCCCTAAATTAGCAGGATTGCAA-GGAGATGAGGCATCTCTCCCATGTAtttttttaaaggatttatttacttttttttagggagagaatgcacaagagggggtagaa i canFam3.chr7 I 87 I 133 e mm10.chr1 178906850 3751 + 195471971 I a score=103995.000000 s hg38.chr1_KI270759v1_alt 374996 33 + 425601 cgcgtctctcccacgcattatcctgcctcagag s panTro4.chr1 225133372 33 + 228333871 cacgtctctcccgcgcattatcctgcctcagag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226504202 33 - 229942017 CACATCCCTCTCGCACATTATCCTGCCTCAGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140394707 33 - 143122389 cacatctctcctgcacattatcctgcctcagag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17095887 33 - 229590362 CATGTGTCTCCCACGCATTATCCTGCCTCAGAG i rheMac3.chr1 C 0 I 18 s macFas5.chr1 223859535 32 - 227556264 CATGTGTCTCCCACGCATTATCCTGCCTCAGA- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16909165 33 - 220367699 CATGTCTCTCCCACACATTATCCTGCCTCAGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82709009 33 + 85787240 CATGTCTCTCCCACGCATTAGCCTGCCTCAGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14424122 33 - 49578535 CACATCTCTCCCACGTATTATCCTGCCTCAGCG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36496341 33 + 80974532 cACATCTCTCTTGTGTATTACCCTGGGTCAGAG i canFam3.chr7 I 133 C 0 e mm10.chr1 178906850 3751 + 195471971 I a score=84103.000000 s hg38.chr1_KI270759v1_alt 375029 49 + 425601 -gcatctcaaatgatgctgcttgcacctcagggttctacagtgtttcata s panTro4.chr1 225133405 48 + 228333871 -gcatctcaaatgatgctgcttgcacctcagggttctacagtgtttcat- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226504235 48 - 229942017 -GCATCTCAAATGATGCTGCTTACATCTCAGGGTTCTACAGTGTTTCAT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140394740 48 - 143122389 -gcatctcaaacgatgctgcttgcacctcagggttctacagtgtttcat- i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223859567 17 - 227556264 --------------------------------GTTCTATAGTTTCTCTC- i macFas5.chr1 C 0 I 2 s papAnu2.chr1 16909198 48 - 220367699 -GCATCTCAAATGATGCCACTTACACCTCAGGGTTCTATAGTGTCTCTC- i papAnu2.chr1 C 0 I 2 s chlSab2.chr25 82709042 48 + 85787240 -GCATCTCAAATGATGCCACTTACACCTCAGGGTTCTATAGTGTCTCTC- i chlSab2.chr25 C 0 I 2 s calJac3.chr19 14424155 48 - 49578535 -GCATCTCAGATGATGCTGCTTGCCCCTCAGGATTCTACAGTGTTTAAT- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36496374 48 + 80974532 GCCTTCCGAAATGGTGCCGTTTGTGCCTCAGGGTTCTAAAATGTCAGA-- i canFam3.chr7 C 0 C 0 e mm10.chr1 178906850 3751 + 195471971 I e rheMac3.chr1 17095920 18 - 229590362 I a score=1457153.000000 s hg38.chr1_KI270759v1_alt 375078 486 + 425601 aaaAGAGATCGATGAGCAAATAAATAGATTAACTTCATGTACTCTTAATAG-------TTCAAGAC--CTCTGCCAACCAGCGGTCTCAGGATAAGCAAGACATGACCTCATAATAGGAGGTGTGCTGGTTGGATCAC-AAAGGCTGGTCCTTCAGCCAG-AGTGGGTGGTTCTCTGCAGGG---ACCTCT----TCTAAGCTCTC-CTTGATGAGACAACTAATCATCGTGTACACTGCCGAATGACAGTGTTTGCAGA---ACCTCTAGCATGCATGCTGGCCTC----GGCTATCTCTGCCAATACTTTATTACACAAGCCAGAGTCACCTTCATCGGAAGACTTGAGAACTTGGCTTCTCTATCCCACGAATG-----TT-ATGCAGTCATCTTCCCAGCATCCTGCAGGACAGACCTGCTTATGCCATTTGCAGTACAAACAAAGTACTATCTATCTGAAATTGAGCAGCAAGTACTTTAACTTCACGTACCTCTCCTTCTGAAAATGCCATC s panTro4.chr1 225133453 486 + 228333871 aaaagagatcGATGAGCAAATAAATAGATTAACTTCATGTACTCTTAATGG-------TTCAAGAC--CTCTGCCAACCAGCGGTCTTAGGATAAGCAAGACATGACCTCATAATAGGAGGTGTGCTGGTTGGATCAC-AAAGGCTGGTCCTTCAGCCAG-AGTGGGTGGTTCTCTGCAGGG---ACCTCT----TCTGAGCTCTC-CCTGATGAGACAACTAATCATCGTGTACACTGCCGAATGACAGTGTTTGCAGA---ACCTCTAGCATGCATGCTGGCCTC----GGCGATCTCTGCCAACACTTTATTACACAAGCCAGAGTCACCTTCATCGGAAGACTTGAGAACTTGGCTTCTCTATCCCACGAATG-----TT-ATGCAGTCATCTTCCCAGCATCCTGCAGGACAGACCTGCTTATGCCATTTGCAGTACAAACAAAGTACTATCTATCTGAAATTGAGCAGCAAGTGCTTTAACTTCACGTACCTCTCCTTCTGAAAATGCCATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226504283 484 - 229942017 AAAAGAGATCGATGAGCAAATAAATAGATTAACCTCATGTACTCTTAATGG-------TTCAAGACCTCTCTGCCAACCAGCAGTCTTAGGATAAGCAAGACATGACCTCATAACAGGAGGCGTGCTGGTTGGATCAC-AAAGGCTGGTCCTTCAGCCAG-AGTGGGTGGTTCTCTGCAGGG---TTCTCT----TCTAAGCTCTC-CTCGATGAGACAACTAATCGTCTGGTACAGTGCCGAATGACAGTGTTTGCAGA---ACCTCTGGCATGCATGCTGGCCTC----GGCTATCTCTGCCAATACTTTATTATACAAGCCAGAGTCACCTTCATTGCAAGACGTGAGAACTTGGCTTCTCTATCTCACGAATG-----TT-ATGCAGTCATCTTCCCAGCATCCTGCAGGACAGACCTGCTTATGCGATTTGCAGT----ACAAAGTACTATCTATCTGAAATTGAGCAGCAAGTACTTTAACTTCACGTACCTCTCCTTCTGAAAATGCCATC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140394788 486 - 143122389 aaaagagatcGATGAGCAAATAATTAGATTAACCTCATGTACTCTGAA-GA-------TTCAAGAC--CTCTGCCAACCAGTAGTCTTAGGATAAGCAAGACATGACCTCATAATAGGAGGCGTGCTGGTTGGATCACAAAAGGCTGGTACTTCAGCCAG-AGTGGGTGGTTCTCTGCAGGG---TCATCT----TCTAAGCTCTC-CTCGATGAGACAGCTAATCATCTTGTACACTGCCGAATGACAGTGTTTGCAGA---ACCTCTAGCATGCATGCTGGACTC----GGCTATCTTTGCCAATACTTTATTATACAAACCAGAGTCGCCTTCATCAGAAGACTTGAGAACTTGGCTTCTCTGTCCCACAAATG-----TT-ATGCAGTTGTCTTCCCAGCATCCTGCAAGACAGACCTGCTTATGCCATTTGCAGTACAAACAAAGTACTATCTATCTGAAATTGAGCAGCAAGTACTTTAACTTCACATACCTCTCCTTCTGAAAACGCCATC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17095938 486 - 229590362 AAAAGAGATCTATGAGCAAATAATTAGATTAACCTCATGCACTCTTAATGG-------TTCAAGAC--CTCTGCCAACCAGCAGTCTTAGGATAAGCAAGACATGACCTCATAATAGGAGGCGTGCTGGTGGGATCAC-AAAGGCTGGTCCCTCAGCCAG-AAT-GGTGGTTCTCTGCAGGG---TCCTCT----TCTAAGCTCTC-CTCGATGAGCTAACTGGTCATCTGGCACACTGCCAAATGACAGTGTGTGCAGA---ACCTCTAGCATGCATGCTGCACTT----GGCTATTTTTGCCAATACTTTATGATACAAACCAGAGTCGCCTTCATCAGAAGACTTGAGAATTTGGCTTCTCTATCCCACAAATG-----TTAATGCAGTCATCTTCCCAGCATCCTGCAGGACAGACCTGCTTATGCCATTTGCAGTACAAACAGCGTACTATCTACCTGAAATTGAGCAGGAAGTACTTGAACTTCACGTACCTTTCCTTTTGAAAATGCCATC i rheMac3.chr1 I 18 C 0 s macFas5.chr1 223859586 486 - 227556264 AAAAGAGATCTATGAGCAAATAATTAGATTAACCTCATGCACTCTTAATGG-------TTCAAGAC--CTCTGCCAACCAGCAGTCTTAGGATAAGCAAGACATGACCTCATAATAGGAGGCGTGCTGGTGGGATCAC-AAAGGCTGGTCCCTCAGCCAG-AAT-GGTGGTTCTCTGCAGGG---TCCTCT----TCTAAGCTCTC-CTCGATGAGCTAACTGGTCGTCTGGCACACTGCCAAATGACAGTGTGTGCAGA---ACCTCTAGCATGCATGCTGCACTC----GGCTATTTTTGCCAATACTTTATTATACAAACCAGAGTCGCCTTCATCAGAAGACTTGAGAATTTGGCTTCTCTATCCCACAAATG-----TTAATGCAGTCATCTTCCCAGCATCCTGCAGGACAGACCTGCTTATGCCATTTGCAGTACAAACAGCGTACTATCTACCTGAAATTGAGCAGGAAGTACTTGAACTTCACGTACCTTTCCTTTTGAAAATGCCATC i macFas5.chr1 I 2 C 0 s papAnu2.chr1 16909248 486 - 220367699 AAAAGAGATCTATGAGCAAATAATTAGATTAACCTCATGTACTCTTAATAG-------TTCAAGAC--CTCTGCCAACCAGCAGTCTTAGGATAAGCAAGACATGACCTCATAATAGGAGGCGTGCTGGTTGGATCAC-AAAGGATGGTCCCTCAGCCAG-AAT-GGTGGTTCTCTGCAGGG---TCCTCT----TCTAAGCTCTC-CTTGATGAGATAACTGGTCATCTGGCACACTGCCAAATGACAGTGTTTGCAGA---ACCTCTAGCATGCATACTGCACTC----GGCTATTTTTGCCAATACTTTATTATACAAACCAGAGTCACCTTCATCAGAAGACTTGAGAATTTGGCTTCTCTATCCCACAAATG-----TTAATGCAGTCATCTTCCCAGCACCCTGCAGGACAGACCTGCTTATGCCATTTGCAGTACAAATAGCGTACTATCTACCTGAAATTGAGCAGGAAGTACTTGAACTTCACGTACCTTTCCTTTTGAAAATGCCATC i papAnu2.chr1 I 2 C 0 s chlSab2.chr25 82709092 486 + 85787240 AAAAGAGATCTATGAGCAACTAATTAGATTAACCTCATGTACTCTTAACGG-------TTCAAGAC--CTCTGCCAACCAGTAGTCTTAGGATAAGCAAGACATGACCTCATAATAGGAGGCGTGCTGGTTGGATCAC-AAAGGCTGGTCCCTCAGCCAG-AAT-GTTGGTTCTCTGCAGGG---TCCTCT----TCTAAGCTCTC-CTTGATGAGATAACTGGTCGTCTGGCACACTGCCAAATGACAATGTTTGCAGA---ACCTCTAGCATGCATGCTGCACTC----GGCTATTTTTGCCAATACTTTATTATACAAACCAGAGTCGCCTTCATCAGAAGACTTGAGAATCTGGCTTCTCTAGCCCACAAATG-----TGAATGCAGTCATCTTCCCAGCATCCTGCAGGACAGGCCTGCTTATGCCATTTGCCGTACAAACAGCGTACCATCTACCTGAAATTGAGCAGGAAGTACTTGAACTTCACGTACCTTTCCTTTTGAAAATGCCATC i chlSab2.chr25 I 2 C 0 s calJac3.chr19 14424203 488 - 49578535 AAAAGAGACCTCTGAGCAAATAATTAGGTTAGCCTCATGTACTCTTAATGGTTCAAGTTTCAAGAC--CTCTGCCAACCA-CAGCCTTAGGATAAGCAAGACATGATCTCATAACAGGTGGTGTGTTGGTTGGATCAC-AAAGACTGGTCCTTCAGCCAG-AGTGGGTGGTTCTCTGCAGGG---TCCTCT----TGTAAGCTCTC-CTTGATGAGACCACTCATAGTCTTGTGCACTGCTGAATGACAGTCTTTG-AGG---ACGTCTAGCATGCACGCTGGACTCAGGGAGCTATCTTTGCCAATACTTTATTCTACAAACCAGA-TCGCCCTTGTCGGAAGACCTGAGAACCATGCTTCTCTAGCCCACAGAGA-----T--GTG-GGTCATCTTCACGGCATCCTGCGGAACAGACCTACGCATGGCTTGTGCAGTGCAAATGGAAT----CCTAGCTGAAACTGAGCAGCAAGTGCTTCACCTTCATGGACCTCTCCTTTCGAAAATGCCATC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36496422 467 + 80974532 TAAAGAACCCTGTGAGTGAACGATTAGATTAACCTTGTCTACTCCCTCTGGTTACCATTTTAGGCC--TTCCACCAA-CAGGGGTCTCAGGTTAAGCAGGGCACATACTCCTCCCTGAGGCCATAGTGATCAGATCAC-TGAGGCTGGTCCTTCAGCTGGCAAGGAGTGGTTCTCCACAGGGAGAACCTGTGCTCTCTGAGCTCTCTCCTGATGAGGGAG-TCACCACCTCTCACACAGCTAGATGCCAGTGCTTCTAGAGGCACCTCTAACA-----------CAT----G--------TGCCAGGGCTTTATTACACAAGCCAGAGGCCCTGTCACTAG-AGATCTGAGAACTGTTCTTCTCTG--CCGTGGTTGCCTTATT-ATGCACTC-TACCCCCAGCGCCCCACAAGGGAGGCCTGCTTATGCCATTTGTAGCACAAATGCAGCA----------GTAGTTGAAC------CACTCTAACTTCACATAACTCT--TTTTGAAAATGCCATT i canFam3.chr7 C 0 I 398 e mm10.chr1 178906850 3751 + 195471971 I a score=1181944.000000 s hg38.chr1_KI270759v1_alt 375564 373 + 425601 AGGATAGCTCAGCCCATACCAAGCTTCTGGTACTTCTCTAGTACCCCAAAGCAAGTAATTCATGCCCTAAGGCATTAGCATCCTTGAAGGGAATGTTGCCAAGACAAGGCCACTTCTGCAGAGCAGATACCTTCCCCAGAGGGGAGGCGTCCAAAGTCTTGCCTCAAACGTAGGAATGTTCAGGAAGCAGTCATGGACAGCGAGATCATCAAGTCCCTTAGGaataagtaaactcaaataaaataaaaataaaGTGATTTTCCCTTTTGGAGGTATGTGTTTCAGTCTGGCGCAACTCAACACTGTCAGAAATAATAAAGACACTTACTTGAGACCTAGGAGACCCTTTGGGGC-AGAATTGCCCTCAGCAGAG s panTro4.chr1 225133939 373 + 228333871 AGGATAGCTCAGCCCATACCAAGCTTCTGGTACTTCTCTAGTACCCCAAAGCAAGTAATTCATGCCCTAAGGCATTAGCATCCTTGAAGGGAATGTTGCCAAGACAAGGCCACTTCTGCAGAGCAGATACCTTCCCCAGAGGGGAGGCGTGTAAAGTCTTGCCTCAAACGTAGGGATGTTCAGGAAGCGGTCATGGACAGCGAGATCATCAAGTCCCTTAGGAATAAGTAAACTCAAATAAAATAAAAATAAAGTGATTTTCCCTTTTGGAGGTATGTGTTTCAGTCTGGCGCAACTCAACACTGTCAGAAATAATAAAGACACTTACTTGAGACCTAGGAGACCCTTTGGGGC-AGAATTGCCCTCAGCAGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226504767 373 - 229942017 AGGATAGCTCAGCCCATACCAAGCTTCTGGTACTTCTCTAGTACCCCAAAGCAAGTAATTCATGCCCTAAGGCATTAGCAGCCTTGAAGGGAATGTTGCCAAGACAAGGCCACTTCTGCAGAGCAGATACCTTCCCCAGAGGGGAGGCGTGTCAAGTCTTGCCTCAAACGTAGGAATGTTCAGGAAGCGGTCATGGACAGCCAGATCATCAAGTCCCTTAGGAATAAGTAAACTCAAATAAAATAAAAATAAAGTGATTTTCCCCCTTGGAGGTATGTCTTTCAGTCTGGCACAACTCAACACTGTCAGAAATAATAAAGACACTTGCTTGAGACCTAGGAGACCCTTTGGGGC-AGAATTGCCCTCAGCAGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140395274 371 - 143122389 AGGATAGCTCAGCCCATACCAAGCTTCTGGTACTTCTCTAGTACCCCAAAGCAAGTAATTCATGCCCTAAGGCATTAGCATCCTTGAAGGGAATGTTGCCAAGATAAAGCCTCTTCTGCAGAGCAGATAGCTTCCCCAGAGGGGAGGCGTGTAAAGTCTTGCCTCAAACGTAGGAATGTTCAGGAAGCGGTCATGGACAGCCAGATGATCAAGTCCCTTAGGAATAAGTAAACTCAAGTAAAATAAAAATAAAGTGATTTTCCCCCTTGGAGGTACGTGTTTCAGTCTGGCGCATCTGAACACTGTCAGAAATAAT--AGACACTTGCTTGAGACCTAGGAGACCCTTTGGGGC-AGAATTGCCCTCAGCAGAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17096424 372 - 229590362 AGGATAGCTCAGCCCATACCAAGCTTCTGGTACTTCTCTAGTACCCCAAAGCAAGGAATTCATGCCCTAAGGCATTAGCATCCTTGAAGAGAATGTTGCCAAGACAAGGGCACTTCTGCAGAGCAGATGGCTTCCCCAGAGGGGAGGTGTGTAAAGTCTTGCCTCAAACGTAGGAATGTTCAGGAAGCAGGCATGGACAGCCAGATCATCAAGTCCCTTAGAAATAAGTAAACTCAAGTAAAATAAAAATAAAGTGACTTTCCCCCTTGGAGGTAT-TGTTTCAGTCTGGCGCAACTCAGCACTGTCAGAGATAATGAAGATGCTTGCTTGAGACCTAGGAGACCCATCAGGGC-AGAACTGCCCTCAGCAGAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223860072 372 - 227556264 AGGATAGCTCAGCCCATACCAAGCTTCTGGTACTTCTCTAGTACCCCAAAGCAAGGAATTCATGCCCTAAGGCATTAGCATCCTTGAAGAGAATGTTGCCAAGACAAGGGCACTTCTGCAGAGCAGATGGCTTCCCCAGAGGGGAGGTGTGTAAAGTCTTGCCTCAAACATAGGAATGTTCAGGAAGCAGGCATGGACAGCCAGATCATCAAGTCCCTTAGAAATAAGTGAACTCAAGTAAAATAAAAATAAAGTGACTTTCCCCCTTGGAGGTAT-TGTTTCAGTCTGGCGCAACTCAGCACTGTCAGAGATAATGAAGATGCTTGCTTGAGACCTAGGAGACCCATCAGGGC-AGAACTGCCCTCAGCAGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16909734 372 - 220367699 AGGATATCTCAGCCCATACCAAGCTTCTGGTACTTCTCTAGTACCCCAAAGCAAGGAATTCATGCCCTAAGGCATTAGCATCCTTGAAGAGAATTTTGCCAAGACAAGGGCACTTCTGCAGAGCAGATGGCTTCCCCAGAGGGGATGTGTGTAAAGTCTTGCCTCAAACGTAGGAATGTTCAGGAAGCAGGCATGGACAGCCAGATCATCAAGTCCCTTAGAAATAAGTAAactcaagtaaaataaaaataaagtgacttTCCCCCTTGGAGGTAT-TGTTTCAGTCTGGTGCAACTCAGCACTGTCAGAGATAATGAAGATGCTTGCTTGAGACCTAGGAGACCCATCGGGGC-AGAACTGCCCTCAGCAGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82709578 372 + 85787240 AGGATAGCTCAGCCCATACCAAGCTTCTGGTACTTCTCTAGTACCCCAAAGCAAGGAATTCATGCCCTAAGGCATTAGTATCCTTGAAGAGAATTTTGCCAAGACAAGGCCACTTCTGCAGAGCAGATGGCTTCCCCAGAGGGGGGGTGTGTAAAGTCTTGCCTCAAACGTAGGAATGTTCAGGAAGCAGGCATGGACAGCCAGATCATCAAGTCCCTTAGAAATAAGTAAACTCAATTAAAATAAAAATAAAGTGACTTTCCCCCTTGGAGGTAT-TGTTTCAGTCTGGCGCAACTCAGCACTGTCAGAGATAATGAAGACGCTTGCTTGAGACCTAGGAGACCCATCGGGGC-AGAACTGCCCTCAGCAGAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14424691 352 - 49578535 AGGTTAGCTCAGCCTGTACCCAGCTTCTGGTACTTCTCTAGTACACAAAACCAAATAATTCATCCCCTAAGGCATTAGCATCCTTGAAGGGAAAGTTGCCGAGACAAGGCCACTTCTGCAGAGTAGATGGCTTCCCCAGAGGAGAGGCG--------------TCAAACGTGGGAATGTCCAGGAAGCAGTCACGGACAGCAAGATCATCAAGTCCTTGAGAAATAAGTAAACTCAAATAAAATAAAAATAAAGCAGTTTCCCCCCTGGGAGGTATGTGTGGCAATCTGGTACAACTCAACACTGTCAGAAATAA-------AATTGCTTGAGACCTAGGAGACCCATCGGGAC-AGAATTGCCCTCAGCAGAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36497287 344 + 80974532 AGGATAGCATGGCTTGTCCCAAGCATTTGATTCTTTTATAGTAC-CAGAGCCAGATCATTCATGCCCTAAAACATTGGCACCATTGAGGGGAACATGGCCCAGGAAAGTCCGTTCCCACAGAGAAGACCACTTCCCCAAAGAGAAGGTGTACGAAGTCTTCTCCCAAAAGTGTGTGAGTCTGTCAAATGATCATGAAAAGT-GGGCCACAGCATCTCTT----ACAAACCAACTCAAGGCAAGTA------------CTTTCCGCCCTGCGGAT---GGATTCAATCTGTT--AGCTCAACAATGTCACAA-------AGGCATTTGCTTGGGACCTAGAGGTCAGGCAGAGGCAAGAACTGCCCTCATCCAAG i canFam3.chr7 I 398 C 0 e mm10.chr1 178906850 3751 + 195471971 I a score=321099.000000 s hg38.chr1_KI270759v1_alt 375937 103 + 425601 CTGGTGATGGTTTCCCTTGAGAACAGCCTTTCCCATGAGGGATAAGGAACTGCGGAGATGCTGCTCACCTTGGCCAGGAGCATTGGGCCAGGGATGATGG---CTT s panTro4.chr1 225134312 103 + 228333871 CTGGTGACGGTTTCCCTTGAGAACAGCCTTTCCCATGAGGGATAAGGAACTGCGGAGATACTGCTCACCTTGGCCAGGAGCATTGGGCCAGGGATGATGG---CTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226505140 103 - 229942017 CTGGTGATGGTTTCCCTTGAGAACAGCCTTTCCCATGAGGGATAAGGAACTGCAGAGATGCTGCCCACCTTGGCCAGGAGCATTGGGCCAGGGATGATGG---CTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140395645 106 - 143122389 CTGCTGATGGTTTCCCTTGAGAACAGCCTTTCCCATGAGGGATAAGGAACTGCGGAGATGCTGCCTCCCTTGGCCAGGAGCACTGGGCCAGGGATGGTGGCATCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17096796 106 - 229590362 CTGGTGATGGTTTCCCTTGAGAACAGCCTTTCCCATGAGGGATAAGGAACTGCAGAGATGCTGCCTACCTTGGCCAGGAGCACTGGGCCAGGGATGGTGGCATCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223860444 106 - 227556264 CTGGTGATGGTTTCCCTTGAGAACAGCCTTTCCCATGAGGGATAAGGAACTGCAGAGATGCTGCCTACCTTGGCCAGGAGCACTGGGCCAGGGATGGTGGCATCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16910106 106 - 220367699 CTGGTGATGGTTTCCCTTGAGAACAGCCTTTCCCATGAGGGATAAGGAACTGCAGAGATGCTGCCTACCTTGGCCAGGAGCACtgggccagggatggtggcatctT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82709950 106 + 85787240 CTGGTGATGGGTTCCCTTGAGAACGGCCTTTCCCATGAGGGATAAGGAACTGCGGAGATGCTGCCTACCTTGGCCAGGAGCACTGGGCCAGGGATGGTGGCATCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14425043 106 - 49578535 GTGGTGATGGTTTCCCTTGAAAACAGTCTTTCTCATGAGAGATAAGGAACTGCAGAGATGCTACTGACCTTGGCCAGGAGCACTGGACCAGGGATGTTGGCATCTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178906850 3751 + 195471971 I e canFam3.chr7 36497631 0 + 80974532 C a score=1435776.000000 s hg38.chr1_KI270759v1_alt 376040 480 + 425601 GGGA-CCCTGGTCCCTGGCATCTCAGGCTGGTCTCCAAGGGTCACTGGTGACCTTTCAGGGGACAAAAGAAAAGGATCTTCACAG-A-TAGTTGGCTGTAAATAGGAAGGAGGCAGGGTCAGTGGTGAGGAGGATA----------TTTGAACAGTCAGCGTGTATTTCAAAGCCGTGGTTCTGTCCCC--CTCTGGTGTTGCTTCCTT-------CTCCTCTTCACTCT-GCAGCCGCCTCTTGGTGGTCAGAGGGTGAATGCAGGGCCCTGGGGTTTGGGGCCTAGGGCTGGGAGATCAGAGCTCTTGGAGCTGGCTTGATACCTGGCAATCCTCATCCAGCATCTCCATCTC------------T------------CTACGACGCGTTCTGGCACGTTGCAGGTGAAGTGGGTAGAGCGTGGGATGGTTACTGGAAT-CGATGTAGTTCCAGGGTGCTGTCCTTAAGAGTGCGAGTGGTACCAGTCAGTGTTCTC--GGCATTTAAATATTAGTTGTTGTTATCTT--- s panTro4.chr1 225134415 479 + 228333871 GGGA--CCTGGTCCCTGGTATCTCAGGCTGGTCTCCAGGGGTCACTGGTGAGCTTTCAGGGGACAAAAGAAAAGGATCTTCACAG-G-TAGTTGGCTGTAAATAGGAAGGAGGCAGGGTCAGTGGCGAGGAGGATA----------TTTGAATAGTCAGCATGTATTTCAAAGCCGTGGTTCTGTCCCC--CTCTGGTGTTGCTTCCTT-------CTCCTCTTCACTCT-GCAGCCGCCTCTTGGTGGTCAGAGGGTGAATGCAGGACCCTGGGGTTTGGGGCCTAGGGCTGGGAGACCAGAACTCTTGGAGCTGGCTTGATACCTGGCAATCCTCATCGAGCATCTCCATCTG------------T------------CTACGACGCGTTCTGGCACGTTGCAGGTGAAGTGGGTAGAGCGTGGGATGGTTACTGGAAT-CGATGCAGTTCCAGGGTGCTGTCCTTAAGAGTGCGAGTGGTACCAGTCAGTGTTCTC--GGCATTTAAATATTAGTTGTTGTTATCTT--- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226505243 473 - 229942017 GGGA-CCCTGGTCCCTGGCATCTCAGGCTGGTCTCCAAGGGTCACTGGTGACCTTTCAGGGGAC-----AAAAGGATCTTCACAG-A-TAGTTGGCTGTGAATAGGAAGGAGGCAGGGTCAGTGGCGAGGAGGATA----------TTTGAATAGTCGGCATGTATTTCAAAGCCGTGGTTCTGTCCCCCTCTCTGGTCTTGCTTCCTT----------CTCTTCACTCT-GCAGCCGCCTCCTGGTGGTCAGAGGGTGAATGCAGGGCCCTGGGGTTTGGGGCCTAGGGCTGGGAGATCAGAACTCTTGGAGCTGGCTTGATACCTGGCACCCCTCGTCCAGCATCTCCATCTC------------T------------CTACGACACGTTCTGGCACATTGCAGGTGAAGTGGGTAGAGCGTGGGATGGTTACTGGAAT-CGATGTAGTTCCAGGGTGCTGTCCTTAAGAGTGCGAGTGGTACCAGTCAGTGTTCTCTTGGTATTTAAATATTA---GTTGTTACATT--- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140395751 460 - 143122389 GGGA-CCCTGGTCCCTGGCATCTCAGGCTGGTCTCCAAGGGTCACTGGTGACCTTTCAGGGGACAAAAGAAAAGGATCTTCACAG-A-TAGTTGGCTGTAAATAGGAAGGAGGCAGGGTCAGTGGCAAGGAGGCTA----------TTTGAATAGCCAACATGTATTTCAAAGCCGTGGTTCTATCCCC--CTCTGGTCTTGCTTCCTT-------CTCCTCTTCACTCT-GCAGCTGCCTCTTGGTGGTCAGAGGGTGAATGCAGGGCCCTGGGGTTTGGGGCCTAGGGCTGGGAGATC-----------AGCTGGCTTGATACCTGGCAACCCTCATCCAGCATCTCCATCTCtctacgatgcgtt------------ctacgatgcgttctGGCACGTTGCAGGTGAAGTGGGTAGAGCGTGGGATGGTTACTGGAAT-TGATGTAGTTCCAGGGTGCT----------------GTGGTAC----CTGTGTTCTCCTGGCATTTAAATGTGA---GTTGTTATCTT--- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17096902 477 - 229590362 GGGA-CCCTGGTCCCTGGCATCTCAGGCTGGTCTCCAAGGGTCACTGGTGACCTTTCAGGGGACAAAAGAAAAGGATCTTCACAG-A-TAGTTGGCTGTACATAGGAAGGAGGCAGGGTCAGTGGCGAGGAGGAGA----------TTTGAATAACCAGCATGTATTTCAAAGCCGTGGTTCTATCCCCC-CTCTGGTCTTGCTTCCTT-------CTCCTCTTCACTCT-GCAGC-GCCTCCTGGTGGTGAGAGGGTGAATGCAGGGCTC-AGGGTTTGGGGCCCAGGGCTGGGAGCTCAGAACTCTTGGGACTGGCTTGATACCTGGCGACCCTCATCCAGCATCTCCATCGC------------T------------CTCTGATGCATTCTGGCACATTGCAGGTGAAGTGGATAGAGCGTGGGATGCTTACTGGAAT-CGATGTAGTT-CAGTGTGCTGGCCTTAAGAGTGTGAGTGGCACCAGTCAGTGTTCTCTTGGCATTTAAATATTA---GTTGTAATCTT--- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223860550 477 - 227556264 GGGA-CCCTGGTCCCTGGCATCTCAGGCTGGTCTCCAAGGGTCACTGGTGACCTTTCAGGGGACAAAAGAAAAGGATCTTCACAG-A-TAGTTGGCTGTACATAGGAAGGAGGCAGGGTCAGTGGCGAGGAGGAGA----------TTTGAATAACCAGCATGTATTTCAAAGCCGTGGTTCTATCCCCC-CTCTGGTCTTGCTTCCTT-------CTCCTCTTCACTCT-GCAGC-GCCTCCTGGTGGTGAGAGGGTGAATGcagggctc-agggtttggggcccagggctgggagctcagAACTCTTGGGGCTGGCTTGATACCTGGCGACCCTCATCCAGCATCTCCATCGC------------T------------CTCTGATGCATTCTGGCACATTGCAGGTGAAGTGGATAGAGCGTGGGATGCTTACTGGAAT-CGATGTAGTT-CAGTGTGCTGGCCTTAAGAGTGTGAGTGGCACCAGTCAGTGTTCTCTTGGCATTTAAATATTA---GTTGTAATCTT--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16910212 477 - 220367699 GGGA-CCCTGGTCCCTGGcatctcaggctggtctccaaggGTCACTGGTGACCTTTCAggggacaaaagaaaaagatcttcACAG-A-CAGTTGGCTGTACATAGGAAGGAGGCAGGGTCAGTGGCGAGGAGGAGA----------TTTGAATAACCAGCATGTATTTCAAAGCCGTGGTTCTGTCCCCG-CTCTGGTCttgcttcctt-------ctcctcttcactCT-GCAGC-GCCTCCTGGTGGTCAGAGGGTGAATGCAGGGCTC-GGGGTTTGGGGCCCAGGGCTGGGAGATCAGAACTCTTGGAGCTGGCTTGATACCTGGCGACCCTCATTCAGCATCTCCATCGC------------T------------CTCTGATGCATTCTGGCACATTGCAGGTGAAGTGGATAGAGCGTGGGATGCTTACTGGAAT-CGATGTAGTT-CAGTGTGCTGGCCTTAAGAGTGTGAGTGGTACCAGTCAGTGTTCTCTTGGCATTTAAATATTA---GTTGTAATCTT--- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82710056 477 + 85787240 GGGA-CCCTGGTCCCTGGCATCTCAGGCTGGTCTCCAAGGGTCACTGGTGACCTTTCAGGGGACAAAAGAAAAGGATCTTCACAG-A-TAGTTGGCTGTACATAGGAAGGAGGCAGGGTCACTGGTGAGGAGGATA----------TTTGAATAACCAGCATGTATTTCAAAGCCGTGGTTCTATCCCCG-CTCTGGTCTTGCTTCCTT-------CTCCTCTTCACTCT-GCAGC-GCCTCCTGGTGGTGAGAGGGTCAATGCAGGGCTC-GGGGTTTGGGGCCTAGGGCTGGGAGATCAGAACTCTTGGAGCTGGCTTGATACCTGGTGACCCTCATCCAGCATCTCCATCGC------------T------------CTCTGATGCATTCTGGCACATTGCAGGTGAAGTGGATAGAGCGTGGGATGGTTACTGGAAT-CGATGTAGTT-CAGTGTGCTGGCCTTAAGAGTGTGAGTGGTACCAGTCAGTGTTCTCTTGGTATTTAAATATTA---GTTGTAATCTT--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14425149 485 - 49578535 GGGAACTGTAGGCCCTGGCATCTCAGGCTGGTCTCCAAGGGTCACTGGTGACCTCTCTGGGGACAAAAGAAATGGATCTTCACAGAA-TAATCAGATATAAATAGGAAGGAGGCAGAGTCCGTGGCGAGGAGGGTACAGAGTGCTCTTTGAACGTCCAGCATGTATTTCAGAGCCGTGGCTCTATCCTCT-CTCTGGTCTTGTTTCCTT----------CTCTTCACTCT-CCTGCCGTCTCCTGGTGGTCAGAGGGTGAATGCAGGGGCCTGGGATTTGGTGCCTAGGGCTGGGAGATCAGAACTCTTGGAGCTGGCTTGATATCTGGCAACCTTCACCCGGCGTCTCCATCTC------------T------------CTGCGGCACATTCTGGCACATTACAGGTGAAGTGGGTAGAGCATGCGATAGTTACTGAAATGCGATGTAGTCCCAGGG-GCTGTCCTTAGGAGTGCACGTGGTAC----CAGTGTTTTCGTGGCGTTCAAATATTA---GTTGCTATCTT--- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36497631 505 + 80974532 GGGA-CCCTGGTCCCCAATA-CTTGGGCTGGCCT-CGGGAGTCACTGGTGACCCCT-GGTTGACAGTAGGAAAGGACATTCACAG-ACCACTAGGGTATGAATGGGAAGGAGGCAGGGCCAGTGGGACAGAGAGTGTCAAGTACCATTTGAGAGGCCAGAAC-CAGCTCAAGTTCATGACGTTATCCTAC-CTCTTCTTTTCCTTTCTGTCCATGCTTCCTTTTCACTGTCGCCTC-TCCTCCTGG-GGTCAGTGGGTGGATACAGGGGCCTGAGGGCCTGAGTGCAGGGCCATGAGGTCAGAACTCCTAGAGCTGGGTTGAGACCTAGAAACTCTTGCCTGCCATGTCAAGCTG------------TCTGTCTGAGGTGCTACAACACATTCCAGCAGTTTCCAGGTAAAGTGGGCAGAAAGCAGGATGGTTTCCAGAATGCACTGTGGCTCCAGGGCCGTATCCTTAAGAATGTGAAGGATGC----CAGTGTTTTCTTGGtatttaaatatta---attgttatcttttt i canFam3.chr7 C 0 I 281 e mm10.chr1 178906850 3751 + 195471971 I a score=193282.000000 s hg38.chr1_KI270759v1_alt 376520 65 + 425601 GGCTATCTCATGCGTGTAAGAATTC----TGTGTGTGTAGTTTCCATCCTTAAATTCAACCAAGGTATT s panTro4.chr1 225134894 65 + 228333871 GGCTATCTCATGCGTGTAAGAATTC----TGTGTGTGTAGTTTCCATCCTTAAATTCAACCAAGGTATT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226505716 65 - 229942017 GGCTATCTCATGCATGTAAGAATTC----TGTGTGTGTAGTTTCCATCCTTAAATTCAACCAAGGTATT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140396211 65 - 143122389 GGCTATCTCATGCATGTAAGAATTG----TGTGTGTGTAGTTTCCATCCTGAAATTCAACCAAGGTATT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17097379 69 - 229590362 GGCTATCTCATGCATGTAAGAAATCTGTGTGTGTGTGTAGTTTCCATCCTTAAATTCAACCAAGGTATT i rheMac3.chr1 C 0 I 71 s macFas5.chr1 223861027 69 - 227556264 GGCTATCTCATGCATGTAAGAATTCTCTGTGTGTGTGTAGTTTCCATCCTTAAATTCAACCAAGGTATT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16910689 68 - 220367699 GGCTATCTCATGCATGTaagaattctgtgtgtgtgtgtagtttccATCCTTAAATTCAACCAAggtat- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82710533 69 + 85787240 GGCTATCTCATGCATGTAAGAATTCTGTGTGTGTGTGTAGTTTCCATCCTTAAATTCAACCAAGGTATT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14425634 65 - 49578535 GACTATCTCATACATGTAAAAATTC----TGTGTCTGTAGTTTCCATCCTTAAATTCAACCAATGTACT i calJac3.chr19 C 0 C 0 e mm10.chr1 178906850 3751 + 195471971 I e canFam3.chr7 36498136 281 + 80974532 I a score=4541.000000 s hg38.chr1_KI270759v1_alt 376585 5 + 425601 ACTGT s panTro4.chr1 225134959 5 + 228333871 ACTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226505781 5 - 229942017 ACTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140396276 5 - 143122389 ATTGT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223861096 2 - 227556264 ---GT i macFas5.chr1 C 0 I 1227 s papAnu2.chr1 16910757 3 - 220367699 --tgt i papAnu2.chr1 C 0 I 13 s chlSab2.chr25 82710602 2 + 85787240 ---GT i chlSab2.chr25 C 0 I 13 s calJac3.chr19 14425699 5 - 49578535 ACTTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178906850 3751 + 195471971 I e canFam3.chr7 36498136 281 + 80974532 I e rheMac3.chr1 17097448 71 - 229590362 I a score=104451.000000 s hg38.chr1_KI270759v1_alt 376590 57 + 425601 -AAAAAAAAGCAAGACAggcctggcacagtggctcacgcctgtaatcccagcactttg s panTro4.chr1 225134964 56 + 228333871 --AAAAAAAGCAAGACAggcctggtgcggtggctcacgcctgtaatcccagcactctg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226505786 56 - 229942017 --AAAAAAAGCAAGACAggcttggcgcggtggctcacgcctgtaatcccagcactttg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140396281 56 - 143122389 -AAAAAAAAGCAAGACAggcctggcgtggtggctcacgcctgtaatcccagcacttt- i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223862325 57 - 227556264 -aaaaaaaaGCAAGGCAggcctggtgcggtggctcacgcctataatcctagcactttg i macFas5.chr1 I 1227 C 0 s papAnu2.chr1 16910773 57 - 220367699 -aaaaaaaagcaaggcaggcctggcgcggtggctcacgcctataatcccagcactttg i papAnu2.chr1 I 13 C 0 s chlSab2.chr25 82710617 57 + 85787240 -aaaaaaaaGCAAGACAggcctggcgcagtggctcacgcctataatcctagcactttg i chlSab2.chr25 I 13 C 0 s calJac3.chr19 14425704 39 - 49578535 AAAAAAAAAAC------GGCTGGGCGCAGCGGCT-------------ccagcacttgg i calJac3.chr19 C 0 C 0 e mm10.chr1 178906850 3751 + 195471971 I e canFam3.chr7 36498136 281 + 80974532 I e rheMac3.chr1 17097448 71 - 229590362 I a score=693302.000000 s hg38.chr1_KI270759v1_alt 376647 266 + 425601 ggaggccaagg-agggaggatcacgaggtcaggagattgagaccatcgtggccaacatggtgaaatcccgtctctacta---------aaaaatacaaaa-aattgctgggcgtggtggtgcatgcctgtagttccagctactcaggaggctgaggcaggggaatcgcttgaacccaggaggcggaggttgccgtgagctgagatcacactactgcactccagcccgggtgacagggcaagacttcgtctcaaaaaaga-----------aaaaaaaaaaagcaagac s panTro4.chr1 225135020 266 + 228333871 ggaggccaagg-agggcagatcacaaggtcaggagattgagaccatcgtggccaacatggtgaaatcccgtctccacta---------aaaaatacaaaa-aattgctgggcgtggtggtgcatgcctgtagttccagctactcaggaggctgaggcaggggaatcgcttgaacccaggaggcggaggttgccgtgagctgagatcacaccactgcactccagcctgggtgacagagcaagacttcgtctcagaaaaga-----------aaaaaaaaaaagcaagac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226505842 269 - 229942017 ggaggccaagg-agggtggaccacgagatcaggagattgagaccattgtggccaacatggtgaaatcccgtctctacta---------aaaaatacaaaa-aattgctgggcatggtggtgcgcgcctgtggttccagctactcaggaggctgaggcaggggaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcgcaccactgtactccagcctgggtgacagagcaagacttcatctcaaaaaaga-----ca---gaaaaaaaaaaaGCAAGAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140396337 262 - 143122389 -------------gggtggaccacgaggtcaggagattgagaccatcgtggccaacatggtgaaatcccgtctttacta---------aaaaatacaaaa-aattgctgggcgtagtggcgcatgcctgtagttccagctactcaggaggctgaggcaggggaatcgcttgaacccaggaggcggaggttgcagtgagctgagatcgcaccactgcactccagcctgagtgacagagcaagacttcatctcaaaaaagaaaaaaaa---aaaaaagaaaaaGCAAGAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17097519 268 - 229590362 ggaggccaaggcagggcagatcaagaggtca-gagattgagaccatcctggccaacagggcgaaatatcatctctacta---------aaaaataccaaa-aattgttgggcgtggtggcgcatgcctgtagtcgcagctactcgggaggctgaggcaggggaatcgcttgaacccaggaggcggaggttgcagtgagc-----tgacaccactgcactccagcctgggcgacagagcaagactccgtctcaaaaaagaaaaaaag----aaaaaaaaaaaGCAAGAC i rheMac3.chr1 I 71 C 0 s macFas5.chr1 223862382 266 - 227556264 ggaggccaaggcagggcagatcaagaggtca-gagattgagaccatcctggccaacagggcgaaatatcatctctacta---------aaaaataccaaa-aattgttgggcgtggtggcg-gcgcctgtagtcgcagctactcgggaggctgaggcaggggaatcgcttgaacccaggaggcggaggttgcagtgagc-----tggcaccactgcactccagcctgggcgacagagcaagactccgtctcaaaaaagaaaaaaag-----aaaaaaaaaaGCAAGAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16910830 286 - 220367699 ggaggccaaggcggggcagatcacgaggtca-gagattgagaccatcctggccaacatggtgaaatcccatctctactaaaaaataccaaaaataccaaa-aattgttgggcgtggtggcgcatgcctgtagtcgcagctactcgggaggctgaggcaggggaatcgcttgaacccaggaggcggagattgcagtgagctgagatggcaccactgcactccagcctgggtgacagagcaagactccgtctcaaaaaagaaaaaaaaaaaaaaaaaaaaaaggcaagac i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82710674 270 + 85787240 ggaggccgaggcggggcagatcacgaggtca-gagattgagaccatcctggccaacatggtgaaatcccatctctacta---------aaaaataccaaa-aattgttgggagtggtggcgcatgcctgtagtcgcagctactcgggaggctgaggcaggggaatcgcttgaacccaggaggcggagattgcagtgagctgagatggcaccactgcactccagcctgggtgacagagcaagactccgtctcaaaaaaaaaaaaaaa-------aaaaaaaGGCAAGAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14425743 271 - 49578535 ggaggctgagg-tgggctgatgatgaggtcaggagcttgagaccatcctggctaatgtggtgaagccctgtctttact----------aaaaatacaacatagtagccgggtgtggtggcgcatgcctgtagtcccaggtactcgggaggctgagacaggagaattgcttgaacccagcaggcggaggttgcaatgagccaagatcctgccactgcactccagcctgggtgacagagcaaga-tccgtctcaaaacaaaaacggac-----acaaacaaaagaaaGTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178906850 3751 + 195471971 I e canFam3.chr7 36498136 281 + 80974532 I a score=113744.000000 s hg38.chr1_KI270759v1_alt 376913 37 + 425601 aaaaACTCTCTCCC-TTTTCTAGAAAAGAGC---------ATGCCTG s panTro4.chr1 225135286 37 + 228333871 aaaaACTCTCTCCC-TTTTCTAGAAAAGAGC---------ATGCCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226506111 37 - 229942017 GAAAACTTCCTCCC-TTTTCTAGAAAAGAGC---------ATGCCTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140396599 46 - 143122389 AAAAACTCTCTCCC-TTTTCTAGAAAAGAGCATGCCTGTGATGCCTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17097787 36 - 229590362 -AAAACTCTCTCCC-TTTTCTAGAAAAGAGC---------ATGCCTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223862648 36 - 227556264 -AAAACTCTCTCCC-TTTTCTAGAAAAGAGC---------ATGCCTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16911116 37 - 220367699 -aaAACTCCCTCCCtttttttAGAAAAGAGC---------ATGCCTG i papAnu2.chr1 C 0 I 100 s chlSab2.chr25 82710944 36 + 85787240 -AAAACTCTCTCCC-TTTTCTAGAAAAGAGC---------ATGCCTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14426014 28 - 49578535 ---------CTCCC-TTTTCTGTAAAAAAGC---------ATGCCTG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36498417 37 + 80974532 AAAAACACTCTCTT-GTTTGTGGAGAAGAAC---------ATGCCTG i canFam3.chr7 I 281 C 0 e mm10.chr1 178906850 3751 + 195471971 I a score=146072.000000 s hg38.chr1_KI270759v1_alt 376950 61 + 425601 ----TGCGTATGGCTGGC---------TGTGTGCCTACAGTTCATGTGCCTGTTTCCGTTTTTGCTGCTCAAAG s panTro4.chr1 225135323 61 + 228333871 ----TGCGTATGGCTGGC---------TGTGTGCCTACAGTTCATGTGCCTGTTTCCATTTTTGCTGCTCAAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226506148 61 - 229942017 ----TGCGTATGGCTGGC---------TGTGTGCCTGCAGTTCATGTGCCTGTTTCCGTTTTTGCTGCTTAAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140396645 61 - 143122389 ----TGCATATGGCTGGC---------TGTGTGCCTACAGTTCATGTGCCTATTTCCGTTTTTGCTGCCCAAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17097823 61 - 229590362 ----TGTGTGTGGCTGGC---------TGCGTGCCTACAGTTCATGTGCCTATTTCCGTTTTTGCTGCCCAAAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223862684 61 - 227556264 ----TGTGTGTGGCTGGC---------TGCGTGCCTACAGTTCATGTGCCTATTTCCGTTTTTGCTGCCCAAAG i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82710980 61 + 85787240 ----TGTGTGTGGCTGGC---------TGCGTGCCTACAGTTCATGTGCCTATTTCTGTTTTTGCTGCCCAAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14426042 59 - 49578535 ------TGTGTGGCTGGC---------TGCGTGCACACAGTTCAGGTGCCTGTTTCCATTTTTGCTGCGCAAAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36498454 74 + 80974532 TGTGCATGCGTGGTAGGCGCCCATGTGTCCGTGTTTGTGATTTATATGTCTGCTGTGGTCCTAGCCACCCACAG i canFam3.chr7 C 0 I 990 e mm10.chr1 178906850 3751 + 195471971 I e papAnu2.chr1 16911153 100 - 220367699 I a score=223540.000000 s hg38.chr1_KI270759v1_alt 377011 103 + 425601 CCATGGATTGGTGTGTAGTCAGG------------ACCTGCATTCTCTGCTTGGTGGTTCAGTGTCTGGGATGATACTGTTTCCCGGTTACTCTAGAGcagaggtcaacaaactt s panTro4.chr1 225135384 103 + 228333871 CCATGGATTGGTGTGTAGTCAGG------------ACCTGCATTCTCTGCTTGGTGGTTCAGTGTCTGGGATGATACTGTTTCCCGGTTACTCTAGAGcagaggtcaacaaactt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226506209 103 - 229942017 CCATGGATTGTTGTGTAGTCAGG------------ACCTGCATTCTCTGCTTGGTGGTTCAGTGTCTGGGATGATACTGTTTCCTGGTTACTCTAGAGcagaggtcaacaaactt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140396706 115 - 143122389 CCATGGATCGTTGTGTAGTCAGGCAGTCAAGAGACACTTGCGTTCTCTGCTTGGTGCTTCAGTGTCTGGGATGATACTGTTTCGTGGTTACTCCAGAGcagaggtcaacaaactt i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17097884 115 - 229590362 CAATGGACTGTTGTGTCATCAGGAAGTCAAGAGACACCTGCATTCTCTGCTTGGTGGTTCAGTGTCTGGGACGATACTGTTTCATCATTACTCTAGAGcaggggtcaacaaactg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223862745 115 - 227556264 CAATGGACTGTTGTGTCATCAGGAAGTCAAGAGACACCTGCATTCTCTGCTTGGTGGTTCAGTGTCTGGGACGATACTGTTTCATTGTTACTCTAGAGcaggggtcaacaaactg i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82711041 115 + 85787240 CAATGGACTGTTGTGTCATCAGGAAGTCAAGAGACACCTGCATTCTCTGCTTGGTGGTTCAGTGTCTGGGACGACACTGTTTCATCGTTACTCTAGAGcaggggtcaacaaactg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14426101 114 - 49578535 CAATGGATGATTGTGTAGTCAGGAAATC-AGACACACCTTCATTTTCTGCTTGGTGGTTCTGGGTCTGGGATGATACTGTTTCATCATTACTCTAGAGcaggggtcgacagactt i calJac3.chr19 C 0 C 0 e mm10.chr1 178906850 3751 + 195471971 I e canFam3.chr7 36498528 990 + 80974532 I e papAnu2.chr1 16911153 100 - 220367699 I a score=741563.000000 s hg38.chr1_KI270759v1_alt 377114 418 + 425601 cttatgcaaaggagcaggtagcgagcatttttggctttgtgggcgacacaggctctgtt-acaaccactcaactct--tattgtagcacaaaagtagccacagacactatgtaaacaaatagatgtggctgtgttttaataaaactttatttacaaaagcaggcagtgtgccagcttgggcctgcaggaccctggttggtcag-cccTGTGCCTGAGTGATAACATGCTCTTTCATGC-CTTTAAAAATGA----TTATTAAAGTGTGTTCATTATC---CTGTTC-TTT-----TTGTC-CTTTTTCTTGTTTAAT-----AAGTGTTCACTGATTTTAAAAAGACATTTTTCTAAAAATCTGGGGGttttttgtgttttttttgtgtgtgtttttttttttttttttttttttttttttgacacaaggtcttgctctgtc s panTro4.chr1 225135487 405 + 228333871 cttatgcaaaggagcaggtagcgagcatctttggctttgtgggcgacacaggctctgtt-acaaccactcaactct--tattgtagcacaaaagtagccacagacactatgtaaacaaatagatgtggctgtgttttaataaaactttatttacaaaagcaggcagtgtgccagcttgggcctgcagggccctggttggtcag-cccTGTGCCTGAGTGATAACATGCTCTTTCATGC-CTTTAAAAATGA----TTATTAAAGTGTGTTCATTATC---CTGTTC-TTT-----TTGTC-CTTTTTCTTGTTTAAT-----AAGTGTTCACTGATTTTAAAAAGACATTTTTCTAAAAATCTGGG----------Gttttttttgt---ttttttttttttttgtgtgtgtgtgttttttgacacaaggtcttgctctgtc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226506312 396 - 229942017 cttatgcaaaggaccaggtagcaagcatttttggctttgtgggctacataggctctgtt-acaaccactcaactct--tattgtagcacaaaagtagccacagacactatgtaaacaaatagatgtggctgtgttttaataaaactttatttacaaacgcaggcagtgtgccagcttgggcctgcagggccctggttggtcagcccctgTGCCCGAGTGAT-ACATGCTCGTTCATGC-CTTTAAAAATGA----TTATTAAAATGTGTTCATTATC---CTGTTCTTTT-----TTGTC-CTTTTTCTTGTTTAATAAAAGAAATGTTGACTGATTTTAAAAAGACATTTTTCTAAAAGTGTGG----------------TTttgt---tgttgttgttgt---------tgtcgtttttgACACAAGgtcttgctctgtc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140396821 395 - 143122389 cttatgcaaaggaccaggtagcaagcatttttggctttgtgggctacacagggtctgtt-acaaccactcaactct--tattgtagcacaaaagtagccacagacactatgtaaacaaatagatgtggctgtgttttaataacac--tgtttacaaaagcaggccgtgtgccagcttgggcctgcagggccctggttgcccagcccccgTGCCCGAGTGAT-ACATGCTCTTTCATGC-CTTTGAAAATGATTATTTATTAAAATGTGTTCATTATC---CTGTTC-TTTTTTAATTTTA-ATTCTTCTTATTTAATAAAAGAAGAGTTGACTGATTTTTAAAAGAA--TTTTCTAAAAGTCTG------------------TTTGT---TGGttttttttt------------tgtttttgacacaaggtcttgctctgtc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17097999 372 - 229590362 cttatgcaaagaaccaagcagcaaacatttttggctttgtgggctacataggctctgttaacaaccagtcaactct--tactgtagcacaaaagtagccacagacactatgtgaacaaatagatgtggatgtgtttgaataaaactttatttacaaaagcaggcagtgtgctggcttgggcctgaagggccctggttggtcagcccctgTGCCA---------CATGCTCTTTCAGGC-CTTTCAAAATGATTATTTATTAAAATGTGTTCATTATC---CTATTC---------TTGTC-CTTTTTCTTGTTTAATAA---AAGTGTTAACTGATTTTAAAAAGACATTTTTCTAAAAGTCTG-------------------ttgt-----------tttt------------tgttttcagcacaaggtcttactctgtc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223862860 372 - 227556264 cttatgcaaagaaccaagcagcaaacatttttggctttgtgggctacataggctctgttaacaaccagtcaactct--tactgtagcacaaaagtagccacagacactatgtgaacaaatagatgtggatgtgtttgaataaaactttatttacaaaagcaggcagtgtgctggcttgggcctgaagggccctggttggtcagcccctgTGCCA---------CATGCTCTTTCATGC-CTTTCAAAATGATTATTTATTAAAATGTGTTCATTATC---CTATTC---------TTGTC-CCTTTTCTTGTTTAATAA---AAGTGTTAACTGATTTTAAAAAGACATTTTTCTAAAAGTCTG-------------------ttgt-----------tttt------------tgttttcaacacaaggtcttactctgtc i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82711156 383 + 85787240 cttatgcaaagaactaggcagcaaacatttttggctttgtgggctacagaggctctgttaacaaccagtcaactct--tactgtagcacaaaagtagccacagacactatgtgaacaaatagttgtggctgtgtttgaataaaactttatttacaaaagcaggcagtgtactggcttgggcctgaagggccctggttggtcagcccctgTGCCAGAGTGAT-TCATGCTCTTTCATGC-CTTTCAAAATGATTATTTATTAAAATGTGTTCCTTATCTTGTTGTTC---------TTGTC-CCTTTTCTTGTTTAATAA---AAGTGTTAACTGATTTTAAAAAGACATTTTTCTAAAAGTCTG-------------------ttgt-----------tttt------------tgttttcgacgcaaggtcttgctctgtc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14426215 375 - 49578535 cttacacaaaggaccacgtagcaagtatgtttggccacgtgggccacgtagcct-ggtt-agaatcactt-acttt--tattatagcacaaaagtagcctcagacactatgtaaacaaacagatgtggctgtgttttaataaaactttatttacaagagc-ggcagtgtggtggttggcacctgcagggccctggctggtcagcccctgTGCTGGAGTGAT-ACACACTCCTTCATGT-CTTC--AACTCATTACTAATTAAGATACATTCATTAGC---CTGTTC-ATT-----TTGTCGTTTTTTCATGTCTAATGA---AAGCACTGACTGATTTTAAAAAGATGTTTTTCTAAAAGtctt----------------------t-----------tttt------------ttttttggacacagggtgtccctttgtt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36499518 286 + 80974532 ccTGGgtaaaggaccagatcgtgaacatctgtggctttatgggccacacaggctctgag-gcaaccactcaggtctgctgcggtagcaccaaagcagccagaaccgacatgtg----aataggcatggctgtgttccaataaaactttatttataaaaacaggtggtgggctgggtttgacccgtagg-ccctggtttgtcagcccatgT------------ACATGCTCA-TCATGCTCTCTCAGCATTATTA-CTATTAAAATTTGTTCACAATC---CCGCTC---------TTTTT-------------------------------------------------------------------------------------GT-----------ATCT----------------------------TCTTGCTGTGCC i canFam3.chr7 I 990 I 67 e mm10.chr1 178906850 3751 + 195471971 I e papAnu2.chr1 16911153 100 - 220367699 I a score=448339.000000 s hg38.chr1_KI270759v1_alt 377532 219 + 425601 acccaggctggagtgcagtggcgcaatctcggctcactgcaacctctgcctcctgggttcaggtgattctcctgcctcggcctcctgagaagctgggattataggcgcgcgccacca-tgccc-agataatttttgtatttttagtagagatgggg--tttcaccatgttggccaggctggtctcaaactcccgatctcaggtgatctgcccgcctcagcctc s panTro4.chr1 225135892 219 + 228333871 acccaggctggagtgcagtggcgcaatctcggctcactgcaacctctgcctcctgggttcaggtgattctcctgcctcagcctcctgagaagctgggattataggcatgtgccacca-tgccc-agataatttttgtatttttagtagagatgggg--tttcaccatgttggccaggctggtctcaaactcccgatctcaggtgatctgcccgcctcagcctc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226506708 219 - 229942017 acccaggctggagtgcagtggcgcaatctcggctcactgcaacctctgcctcctgggttcaggtgactctcctgcctcagcctcctgagaagctgggattacaggcgtgcgccacca-tgccc-agataatttttgtatttttagtagagatgggg--tttcaccatgttggccaggctggtctcaaactcccgatctcaggtgatctgcctgcctcagcctc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140397216 219 - 143122389 ccccaggctggagtgcagtggcacaatctctgctcacagcaaccgctgcctcctgggttcaggtgattctcctgcctcagcctcctgagtagctggaattacaggcacgcgccaccattgccc-ggataatttttgta-ttttagtagagatgggg--tttcaccatgttggccaggctggtctcaaacccccgatctcaggtgatccgcccgcctcagcctc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17098371 208 - 229590362 acccaggctggagtgccgtggtgcaatctcggctcactccaacctctgcctcctgggttcaggtgattctcctgcctcagcctcctgagtaactgggattacaggcgctcgccacca-tactc--------------atttttggtagagatggggtttttcaccatgttggccaggctggtctcaaactcccaatctcaggtgatctgccggccttagcctc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223863232 208 - 227556264 acccaggctggagtgccgtggtgcaatctcggctcactccaacctctgcctcctgggttcaggtgattctcctgcctcagcctcctgagtaactgggattacaggcgctcgccacca-tactc--------------atttttggtagagatggggtttttcaccatgttggccaggctggtctcaaactcccaatctcaggtgatctgccggccttagcctc i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82711539 205 + 85787240 acccaggctggagtgccgtggtgcaatctcggctcactacaacctctgcctcctgggttcaggtgatt---ctgcctcagcctcctgagtaactgggattacaggcgcccgccacca-tactc--------------atttttggtagagatggggtttttcaccatgttggccaggctggtctcaaactcccaatctcaggtgatctgcaggcctcagcttc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14426590 219 - 49578535 gcccaggctaaagtgcattggcgcaattttggctccctgcaaactccccctccagggctcaagcagttctgctgcctca-cctcctgagtagctgggattacaggtgcctgccgcca-taggctggctaatttttgcatttttagtagagatgggg--ttttgccatattggccgggctggtctcaaactcccaacctcaggtgatctgactgccttggcctc i calJac3.chr19 C 0 I 13 e mm10.chr1 178906850 3751 + 195471971 I e canFam3.chr7 36499804 67 + 80974532 I e papAnu2.chr1 16911153 100 - 220367699 I a score=79526.000000 s hg38.chr1_KI270759v1_alt 377751 47 + 425601 tcaaagtgtggggattacaggcgtgagccacggtgcccagcATAAAT- s panTro4.chr1 225136111 47 + 228333871 tcaaagtgtggggattacaggcgtgagccacggtgcccagcATAAAT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226506927 46 - 229942017 ccaaagtgtggggattaca-ccgtgagccacggtgcccagcATAAAT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140397435 48 - 143122389 ccaaagtgtggggattacaggcgtgagccacggtgcccagcATAATTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17098579 48 - 229590362 ccaaagtgcggggattacaggcgtgagccacagtgcccagcATAAATG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223863440 48 - 227556264 ccaaagtgtggggattacaggcgtgagccaccgtgcccagcATAAATG i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82711744 48 + 85787240 ccaaagtgtggggattacaggcgtgagccatggtgcccagcATAAATG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178906850 3751 + 195471971 I e canFam3.chr7 36499804 67 + 80974532 I e calJac3.chr19 14426809 13 - 49578535 I e papAnu2.chr1 16911153 100 - 220367699 I a score=47348.000000 s hg38.chr1_KI270759v1_alt 377798 22 + 425601 TTATTTTCAAAGGCAAGTGTGG s panTro4.chr1 225136158 22 + 228333871 TTATTTTCAAAGGCAAGTGTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226506973 22 - 229942017 TTATTTTCAAAGGCAAGTGTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140397483 22 - 143122389 TTATTTTCAAAGGCAAGTGTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17098627 22 - 229590362 TTATTTTCAAAGGCAAGTGTGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223863488 22 - 227556264 TTATTTTCAAAGGCAAGTGTGG i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82711792 22 + 85787240 TTATTTTCAAAGGCAAGTGTGG i chlSab2.chr25 C 0 C 0 s mm10.chr1 178910601 22 + 195471971 TCATTTCAATAAGTATACATGG i mm10.chr1 I 3751 C 0 e canFam3.chr7 36499804 67 + 80974532 I e calJac3.chr19 14426809 13 - 49578535 I e papAnu2.chr1 16911153 100 - 220367699 I a score=327061.000000 s hg38.chr1_KI270759v1_alt 377820 168 + 425601 TCAGTGTAGGCAGGGAGT-GAAACATGTATGCGTA-AACACAACTACTTGAAAGAGCGGTGCGGTCCTTCCTCAGGCCCCC-GTCAGCTCTGCTCCATCCCCAGTCCCTTCCTGTGCCTGCCCAACCTGTCCTCCATAGCCAGGG-CCCCCCAACCCAAACCCCTCCAGGCA s panTro4.chr1 225136180 168 + 228333871 TCAGTGTAGGCAGGGAGC-GAAACATGTATGTGTA-AACACAGCTACTTGAAAGAGCGGTGCGGTCCTTCCTCAGGCTCCC-GTCAGCTCTGCTCCGTCCCCAGTCCCTTCCTGTGCCTGCCCAACCTGTCCTCCATAGCCAGGG-CCCCCCAACCAAAACCCCTCCAGGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226506995 168 - 229942017 TCAGTGTAGGCAGGGAGT-GAAACATGTATGTGTA-AACATAGCTACTTGAAAGAGCGGTGCGGTCCTTCCTCAGGCCCCC-GTCAGCTCTGCTCCGTTCCCAGTCCCTTCCTGTGCCTGCCCGACCTGTCCTCCATAGCCAGGG-CCCCCCAGCCCGAACCCCTCCAGGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140397505 147 - 143122389 TCAGTGTAGGCGGGAAGG-GAAACATGTACGCATG-AACACAGCTACTTG----------------------CAGGCCCCC-ATCAGCTCCACTCCGTCCCCAGTCCCTTCCTGTGCCTGCCCAACCTGTCCTCCATAGCCAGGGCCCCCCCCACCCGAACCCCTCCAGGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17098649 168 - 229590362 TCAGTGTAGGCGGGAAGT-GAAACATGTATGCATA-AACACAGCTACTTCAAAGAGCAGCGCGGTCCTTCCTCAGGCCCCT-GTCAGCTCCACTGCGTCCCCAGTCCCTTCCTGTGCCTGCCCAACCTGTCCTCCATAGCCAGGG-CCTCCCCACCCGGTCCCCTCCAGGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223863510 168 - 227556264 TCAGTGTAGGCGGGAAGT-GAAACATGTATGCATA-AACACAGCTACTTCAAAGAGCAGCGCGGTCCTTCCTCAGGCCCCT-GTCAGCTCCACTGCGTCCCCAGTCCCTTCCTGTGCCTGCCCAACCTGTCCTCCATAGCCAGGG-CCTCCCCACCCGGCCCCCTCCAGGCA i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82711814 168 + 85787240 TCAGTGTAGGCGGGAAGT-GAAACATGTATGCATA-AACACAGCTACTTCAAAGAGCAGCGCGGTCCTTCCTCAGGCCCCT-GTCAGCTCCACTGTGTCCCCAGTCCCTTCCTGTGCCTGCCCAACCTGTCCTCCATAGCCAGGG-CCTCCCCACCCGGCCCCCTCCAGGCA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178910623 149 + 195471971 CCGGGATAGGCAGGAGCT-GGACCATGTGTTCATA-AAAGATGCTACATGGATGAGTGATATGGTTTCCTCTCAGGTATGC--TCAGTTCTGCCTCATTGCCTG-CCCTTCCTGCTGCTAACTAACAAGTCCTCCAGAGCCAGAG--------------GACCTTGCA---- i mm10.chr1 C 0 C 0 s canFam3.chr7 36499871 158 + 80974532 TTGGGGTGGGAGGGAGGTGGAAATATGTGTGCATAGAACACGGCTGTTTCTAAGAGTGGGACAGCTCTTCCTCAGGACTCCAGTTGGCTCTGCT--GTCACTGGTCCCCTCCTGCCCC-------ACTGTCTTGCACAGCCAGGA-CCCCTCCCACATGGCCCCCGAG---- i canFam3.chr7 I 67 C 0 e calJac3.chr19 14426809 13 - 49578535 I e papAnu2.chr1 16911153 100 - 220367699 I a score=1856739.000000 s hg38.chr1_KI270759v1_alt 377988 871 + 425601 CCACCTCCCTCCATCCCT---CCCGCCTGGCTCTGGGGAGGGGGTGGCCAGCGGCCCTGCA-CGCTTCTTCCTCTTTTCTCTTCCTCTCTCTTCAGACTTGATGCAAAGAGT-GGGCTAAGTCTGTGCTGACTGTTGCCCTGGAAACTCTTTTGAACCTTTCTCTTTCCCTCCAAAGATTCCGAGTTCCTCCTACAG-TTTGCAGccttcagtaccctgccccttccctcccctgccctcccttACTTGGTTGTCTTTATTCCAAG-TTAAATGATCATCATGAGGTTGGG-AAAG---CCGCAGCTTTCTATGCACCATGTTTTACTCCCCAAAGGACATCTTTTAGAGTCCGCAGAGGCCCACATGAA--GGGCTCACCAGCAGCTCTACCGGTTTGCTTTCCACAAGGAGAGCTAAAATGCCGGTTGCTAAGCAGCATACATGCCGCTGCTTCTTTCCA-------------------------------------CAATGTAGACTT-------AAAAAAATCGCCGTAAACATTTTACCATATGATTGAGTCAGGTGTGGGGAGTCGCAGTAAACATTTTACCATGTGATTGAGTCATGGGTGGGGAGTC--GCGGAAATACACAGGGCAGGCAGTTCGCTA--TCACGATGTTCTCTCTCAATTCTGTCTTTGGTCTGTCTTCCTGGGTAAT--------GTCACATGGAGACCCAGG--GG-ATCTGCCGTCAGCTGTGTGCAGTGGGTTAACAAGA----CGACGGGGAACTTCAGAGT-------------Gcaggcagtcctcatcttttgcagattctgtatttgcacattcacctactcactgaaatgcattt-gtaaccccaaaatcaata----cagcggtttcacagtcattctccgacacgg-gcagaggggtgaaga-tactgagtcgccagatgcacgcgttccccgcc s panTro4.chr1 225136348 827 + 228333871 CCACCTCCCTCCATCCCT---CCCGCCTGGCTCTGGGGAGGGGGTGGCCAGCGGCCCTGCA-CGCTTCTTCCTCTTTTCTCTTCCTCTCTCTTCAGACTTGATGGAAAGAGT-GGGCTAAGTCTGTGCTGACTGTTGCCCTGGAAACTCTTTTGAACCTTTCTCTTTCCCTCCAAAGATTCCGAGTTCCTCCTACAG-TTTGCAGCCTTCAGTACCCTGCCCCTTCCCTCCCCTGCCCTCCCTTACTTGGTTGTCTTTATTCCAAG-TTAAATGATCATCATGAGGTTGGG-AAAG---CCGCAGCTTTCTATGCACCATGTTTTACTCCCCAAAGGACATCTTTTAGAGTCCGTAGAGGCCCACATGAA--GGGCTCACCAGCAGCTGTACCGGTTTGCTTTCCACAAGGAGAGCTAAAATGCCAGTTGCTAAGCAGCATACATGCCGCTGCTTCTTTCCA-------------------------------------CAATGTAGACTT-------AAAAAAATCACTGTAAACATTTTACCATA--------------------------------------------TGATTGAGTCATGGGTGGGGAGTC--ACGGAAATACACAGGGCAGGCAGTTCGCTA--TCACGATGTTCTCTCTCAATTCTGTCTTTGGTCTGTCTTCCTGGGTAAT--------GTCACGTGGAGACCCAGG--GG-ATCTGCCGTCAGCTGTGTGCAGTGGGTTAACAAGA----CGACGGGGAACTTCAGAGT-------------Gcaggcagtcctcatcttttgcagattctgtatttgcacattcacctactcactgaaatgcatgt-gtaaccccaaaatcaata----cagcggtttcacagtcattctccgacacgg-gcagaggggtgaaga-tactgagtcgccagatgcacgcgttccccgcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226507163 825 - 229942017 CCACCTCCCTCCATCCCG---CCCGCCTGGCTCTGGGGAGCGGGTGGCCAGCGGCCCTGCA-CGCTTCTTCCTTTTTTCTCTTCCTCTCTCTTCAGACTTGATGCAAAGAGT-GGGCTAAGCCCGTGCTGACCGTTGCCCTGGAAACTCTTTTGAACCTTTCTCTTTCCCTCCAAAGATTCTGAGTTCCTCCTGCAG-TTTGCAGCCTTCAGTGCCCTGCCCCTTCCCTCCCCTGCCCTGCCTTACTTGGTTGTCTTTGTTCCAAG-TTAAATGATCATCATGAGGTTGGG-AAGG---CCGCAGCTTTCTATGCACCGTGTTTTACTCCCCGAAGGACATCTTTTAGAGTCCGTGGAGGCCCACACGAA--GGGCTCACCAGCAGCTCTACCGGTTTGCTTTCCACAAGGAGAGCTAAAATGCCGGTTGCTAAGCAACATACACACCGCTGCTTCTTTCCA-------------------------------------CAATGTAGACCT-------AAAAAAATCGCCGTAAACATTTTACCATA--------------------------------------------TGATTGAGTCATGCGTGGGGAGTC--GCGGAAATACACAGGGCAGGCAGTTTGCTA--TCACGATGTTCTCTCTCAATTCTGTCTGTGGTCTGTCTTCCTGGGTAAT--------GTCACATGGAGACCCAGG--GG-ATCTGCCGTCAGCTGCGTGCAGTGGGTTAATAAGA----CGACGGGGAACTTCAGAGT-------------Gcaggcagtcctcatcttttgcagactctgtatttgcacattcacctactcactgaaatgcattt-gtaaccccaaaatcaat------agtggtttcacagtcattctctgacatgg-gcagaggggtgaaga-cgttgagtcgccagacgcaagtgttccctgcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140397652 829 - 143122389 CCACCTCCCTCCATCCCT---CCCGCCTGGCTCTGGGGAGCGGGTGGCCAGCGGTCCTGCA-GGCTTCTTCCTCTTTTCTCTTCCTCTCTCTTCAGACTTGATGCAAAGGGT-GGGCTAAGTCCGTGCTGACCGTTGCCCTGGAAACTCTTTTGAACCTTTCTCTTTTCCTCCAAAGATTCCGAGTTCCTCCTACAG-TTTGCAGCCTTTAGCAccctgctccttccctcccctgccctccctTACGTGGTTGTCTTTGTTCCAAGTTTAAATGACCATCATGAGGTTGGGAAAAG---CCGCAGCTTTCTATGCACCATGTTTTCCTCCCCGAAGGGCATCTTTTAGAGTCCGTGGAGGCCCACGTGAA--GGGCTCACCAGCAGCCCTACCGGTTTGCTTTGCACAAGGAGAGCTAAAATGCCGGTTGCTAGGCAACATACACGCCGCTGCTTCTTTCCA-------------------------------------CAACGCTGACTT-------AAAAAAATCGCCATCAACATTTTACCATA--------------------------------------------TGATTGAGTCGGGTGTGGGGAGTC--GCGGAAATACACAGGGCAGGCAGTTTGCTA--TCACGATGTTCTCTCTCAATTCTGTCTTTGGTCTGTCTTCCTGGGGAAT--------GTCACATGGAGGCCCAGG--GG-ATCCGCCGTCAGCTGCGTGCAGTGGGTTAACAAGA----CGACGGGGAACTTCAGAGT-------------Gcaggcagtcctcatcttttgcagattctgtatttgcacattcacctactcactgaaatgcattt-gtaaccccaaaatcaata----cagtggtttcacagccattctccaacacgg-gcagaggggtgaaga-tgttgagtcgccagatgcacgcgttccccgcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17098817 813 - 229590362 CCACCTTCCTCCATCCCT---CCCGCCTGGCTCTGGGGTGCGAGTGGCCAGCGGCCCTGAA-CTCTTCTCCCTCT----------TCTCTTTTCAGACTTGATGC--AGAGT-GGGCTAAGTCTGTGCTGACCGTTGCCCTGGAAACTCTTTTGAACCTGTCTCTTTCCGTCCAAAGATTCCGAGTTCCTCCTACAG-TTTGCAGCCTTTAGTACCCTGCCCC-TCCCTCCCCTGCCCTCCCTTACTTGGTTGTCTTTGTTCCACG-TTAAATGATCGTCGTG-GGTTTGG-AAAG---CTGCGGCTTTCTGTACACCATGTTTTACTCCCCAAAGGATGTCTTTTAGAGTCCGCAGAGGCCCGCGTGAA--GGGCCCACCAGCAGCTCCACCGCTTCGCCTTCCACAAGGAGAGCTAAAATGCCGGTTGCTAAGCAACATACACG-CGCTGCTTCTTTCCA-------------------------------------CAGTGTAGGCTT------AAAAAAAATCGCCGTAAACATTTTGCCATA--------------------------------------------TGATCGAGTCACGCGTGGGGAGTC--GCGGAAATACACAGGACAGGCAGTTTGCTA--TCACCGTGTTCTCTCTCAGTTCTGTCTTTGGTCTGTCGTCCTGGGGAAT--------GTCACACGGAGACCCAGG--GG-ACGTGCCTTCAGCTGCCTGCAGTGGGTTAACAAGA----CCACGGGGAACTTCAGAGT-------------Gcaggcagtcctcatcatttgcagattctgtatttgcacattcacctactcactgaaatgtactt-gtaaccccaaagtcaaga----cagtggtttcacagccattctcggacagag-gcagagcggtgaaga-cactgagtcaccagatgcatgcgttccccgcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223863678 815 - 227556264 CCACCTTCCTCCATCCCT---CCCGCCTGGCTCTGGGGTGCGAGTGGCCAGCGGCCCTGAA-CTCTTCTCCCTCT----------TCTCTTTTCAGACTTGATGCAAAGAGT-GGGCTAAGTCTGTGCTGACCGTTGCCCTGGAAACTCTTTTGAACCTGTCTCTTTCCGTCCAAAGATTCCGAGTTCCTCCTACAG-TTTGCAGCCTTTAGTAccctgcccc-tccctcccctgccctcccTTACTTGGTTGTCTTTGTTCCACG-TTAAATGATCGTCGTG-GGTTTGG-AAAG---CTGCGGCTTTCTGTACACCATGTTTTACTCCCCAAAGGATGTCTTTTAGAGTCCGCAGAGGCCCGCGTGAA--GGGCCCACCAGCAGCTCCACCGCTTCGCCTTCCACAAGGAGAGCTAAAATGCCGGTTGCTAAGCAACATACACG-CGCTGCTTCTTTCCA-------------------------------------CAGTGTAGGCTT------AAAAAAAATCGCCGTAAACATTTTGCCATA--------------------------------------------TGATCGAGTCACGCGTGGGGAGTC--GCGGAAATACACAGGACAGGCAGTTTGCTA--TCACCGTGTTCTCTCTCAGTTCTGTCTTTGGTCTGTCGTCCTGGGGAAT--------GTCACACGGAGACCCAGG--GG-ACGTGCCTTCAGCTGCCTGCAGTGGGTTAACAAGA----CCACGGGGAACTTCAGAGT-------------Gcaggcagtcctcatcatttgcagattctgtatttgcacattcacctactcactgaaatgtactt-gtaaccccaaagtcaaga----cagtggtttcacagccattctcggacagag-gcagagcggtgaaga-cactgagtcaccagatgcatgcgttccccgcc i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82711982 814 + 85787240 CCACCTTCCTCCATCCCT---CCCGCCTGGCTCTGGGGTGCGAGTGGCCAGCGGCCCTGAA-CTCTTCTCCCTCT----------TTTCTTTTCAGACTTGATGCAAAGAGT-GGGCTAAGTCTGTGCTGACCATTGCCCTGGAAACTCTTTTGAACCTTTCTCTTTCCGCCCAAAGATTCCGAGTTCCTCCTACAG-TTTGCAGCCTTTAGTACCCTGCCCC-TCCCTCCCCTGGCCTCCCTTACTTGGTTGTCTTTGTTCCATG-TTAAATGA-CATCGTG-GGTTGGG-AAAG---CTGCAGCTTTCTGTACACCATGTTTTACTCCCCAAAGGATGTCTTTTAGAGTCCGCAGAGGCCCACGTGAA--GGGCTCACCAGCAGCTCCACCACTTCGCTTTCCACAAGGAGAGCTAAAATGCCGGTTGCTAAGCAACATACACG-CGCTGCTTCTTTCCA-------------------------------------CAATGTAGACTT------TAAAAAAATCGCCGTAAACATTTTACCATA--------------------------------------------TGATCGAGTCACGCGTGGGGGGTC--GCGGAAATACACAGGACAGGCAGTTTGCTA--TCACCATGTTCTCTCTCAGTTCTGTCTTTGGTCTGTCGTCCTGGGGAAT--------GTCACACGGAGACCCAGG--GG-ACGTGCCTTCAGCTGCCTGCAGTGGGTTAATAAGA----CGATGGGGAACTTCAGAAT-------------GCAGGTAGtcctcatcgtttgcagattctgtatttgcacattcacctactcactgaaatgtactt-gtaaccccagagtcaaga----cagtggtttcacagtcattctccaacagag-gcagaggggtgaaga-cactgagtcgccagatgcatgccttccccgct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14426822 795 - 49578535 CCACCTCCCTCCATCCCT---CCCGCCTGGCTCTGGGGTGCAGGTGGCCAGCGGCCCTGT--CTCTTCTTCCTCT--TCTCTTGCTCTCACTTCAGTCCTGATGCAAAGGAT-GGGCTAAGTTTGTGCTGACCG-------------------------------TTCCCTCCAAAGATTCCGAGTTCATCCGACAC-TTTGCAGCCTTTAGTA-CCTGCCGCTTCTGCCCCCGGCCCTCCCTCACTTAGTTGTCTTCGCTCCAAG-TT-------CATCATGAGGCTGGA-AAAG---CTGCAGCTTTCTGTACACCACTTTTCACTCCCTCGAGGACCTCTTTTATAGTCCACAGAGGCCCACCTGAG--GGGCTT-CCAGCAGCTCCACTGG-CCGCTTTCCACAGGGAGAGTGAGGACGCTGGTTGCTAGGCAACACACGTGCGGCTGCTGCTTTCCACAAGTAATAGCCGTGTGGGATCCCCGGGTACCGAGCTCAACGTAGACTT-------GAAAAAATAGCTGTCAACATTTTCTCTCATAG-----------------------------------------TGATGGAGTCATGAGTGGGGAGTC--GCGGAAATGCACAGGGCAGACAGTTGTGTATGTCACCATGTTCTATCTAAATTTTGCCTTTGGTATGGCTTCCTGGAGAAT--------GTCACGTGGAGAGTCCGG--GG-ATGTGCCTTCAGCTGTGTGCAGTGGGTTAAT----------------------------------------------AGtcctcatcatttgcagattctgtatgtgcgaattcacctattcactgaaatatatttgggaaccccaaaaccaata----tagtggtttcacagtcattctcggacacgg-gcagaggg--ggaga-ctttgcgtggccggatgcacgcgttccccacc i calJac3.chr19 I 13 I 11 s mm10.chr1 178910772 782 + 195471971 --TCTTCACTCTCTCTAG---CTAGCCTGATCCTGGGGCCATGG----CAGAGGGTCTTCA-TGCCTCTCTTCCT-----------GCATCCTCAGTATTGAT------------------TTGGTGGTGACGACCATCCTAAAATCTCTTTGGAACCTTGAG--TTGCCTTCAGA-ATGCTCAGCGCAGCCTGCAG-CCGATAGCCTTTGCTACCTT------TCTCTCACCGGCCTTCTC------GGTCATTTTTGTGTAGAG-TCAAAACATCACCATGAGGCTGAA-AAAA---CCACAGCTTCCTA---AGCTTTTCTGCCTCACTCGAGACCTGCGATTAGAGACC---TGTGTCCATCTGG----------CTGGCGACTCTGCCGACTTTCTTTCCACGAGACTGCAGAAAACATCAGTTGCCAAGCAACACACACGTCGTGGCTTCTTCCAG-------------------------------------CCGTATGCACTCCCTTTCTAAAA-----GCCACAAATATTTGTCTACA----------------------------------------------ACTGTGTCACACATGTGGACGG--TGGGGAGCATACCAGACAG-CAGACTGGTG--GAATGTTGTATCATTGTCATTTGGTCTGGGATCT--TTTCCTGAAGACTTACACAGAGTCACACGGAGAGCCGGG--AGTGTGTGCCTTTGGCCGTGGGCA-TCGATTAGCAAGACTTCCCACAAGGAACTTTATGGTCGAGTCAGCTGGAGGAGGCAG--------atttgcagatcccagtgttgtacattt-cctgctagataaaatttcttt-gtaatctccaagccaatattcctgatgcttttatggtgatttaaggacagtgcacagagtggaggaaatttttgagtc-cctgacacacatgtcccccgct i mm10.chr1 C 0 C 0 s canFam3.chr7 36500029 760 + 80974532 -----TCCCTGAATCCCTCACCCAGCCCGGCTCTGGCATTCTGG-GGCTGCTAGCTTCACACCTGTTGTTTCTCT-------TCATCTTGCCTCAGCCTGGATGCAAAGGCTCAGACCAGATCTCTGG-GACTTTTGCCCTAGAAACTCTATTGAATTTTTAT-TTTCCTACCAAAGACACTGAGTGAAATCTACAGTTTTTCAGCCGTTAGTACCGTGCCCCTTCTTTCACCTTCCAGCCCCAACTTAACTGTCTTTGTTCCAAG-TTAAAAGATCATCACGGAGTGGAA-AAAAACCCCAAAGCTTTATAGCCACCATTTTTCATTCCCATAAGGATACATTTGGGGGTCTAGAGAGGCCCATGTGAGACAGTCTTGCTCGTGGTTTTACTG----GCTTTCCTCGAGCAGAGCTAAAATGCTGGTTGCCAAGCAACACACATGCCCTGGCTTCTTCCAA-------------------------------------CGATGTGGACTT-GGGGGGAAAAAAACC-------------CGTCCTA--------------------------------------------TGATTGACTCATGAATGGGGAATCATGTGGAAAGGCACAGGGCAAACAG-TCGGTG--TAACAACGTTCTGTTT--ATTCCGGC-----TCCTTTGCCCTGAGGACT----------TACATGGAGCAGTGAGCAGA-GTGTGCCCTCAGCAGTGTGCCCCTGACTAACACGCGTGTTCATTAGGGACTTGGTAGC-------------ACCGTC-GACCTCGTCCCccacagattccatattcgcgaatt------------------------at-------------------------gttttgctgtcatgtgcagacgt---gcatggtggccaa-a-ccttgagtggct-gatgcgccagttccccag- i canFam3.chr7 C 0 C 0 e papAnu2.chr1 16911153 100 - 220367699 I a score=21693.000000 s hg38.chr1_KI270759v1_alt 378859 9 + 425601 gaggtggag s panTro4.chr1 225137175 9 + 228333871 gaggtggag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226507988 9 - 229942017 aaggtggag i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140398481 9 - 143122389 aaggtggag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17099630 9 - 229590362 gagatggag i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223864493 9 - 227556264 gagatggag i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82712796 9 + 85787240 gagatggag i chlSab2.chr25 C 0 C 0 s mm10.chr1 178911554 9 + 195471971 gaagtgtga i mm10.chr1 C 0 C 0 s canFam3.chr7 36500789 9 + 80974532 gaggtgggg i canFam3.chr7 C 0 C 0 e calJac3.chr19 14427617 11 - 49578535 I e papAnu2.chr1 16911153 100 - 220367699 I a score=722819.000000 s hg38.chr1_KI270759v1_alt 378868 296 + 425601 cgtgcaaagctctgccttcacgtttggctctcatatcgtgcacatgtgtcctttttgcagtctccttagcactgtgttttt--------catatttttgtgctttctgatggttattttgctgt---aaacggcccccaagaatggtgctgatgtcctatttagggtccctaagcacaggaaggctgtgatgtgccttatggagaaaatccatgtgttagacacacttctttcaggtaggagctacagtgctcat-gg----gggtctagtgttaatgaatcaagaatac-acacacccagaaaaaggaagag s panTro4.chr1 225137184 296 + 228333871 tgtgcaaagctctgccttcacgtttggctctgatatcgtgcacatgtgtcctttttgcagtctccttagcactgtgttttt--------catatttttgtgctttctgatggtttttttgctgt---aaacggcccccaagaatggtgctgatgtcctatttagggtccctaagcacaggaaggctgtgatgtgccttatggagaaaatccgtgtgttagatacgcttctttcaggtaggagctacagcgctcat-gg----gggcctagtgttaatgaatcaggaatac-acacacccaggaaaaggaagag i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226507997 296 - 229942017 catgcgaagctctgccttcacgttcggctttcatatcgtgcacatgtgtcctttttgcagtctccttagcactgtgttttt--------cataattttgtgctttctgatggttattttgctgt---aaacggcccccaagaatggtgctgatgtcctatttagggtccctaagcacaggaaggctgtgatgtgccttatggagaaaatccatgtgttagatacgcttctttcaggtaggagctgcagtgctcat-gg----gggtctagtgttaacgaatcaagaatat-GCACACCCAGAAAAAGGAAGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140398490 296 - 143122389 cgtgtgaagctctgccttcgccttcggctctcataccgtgcacatgtgtcctttttgcagtctccttagcactgtgttttt--------cgtatttttgtgctttctgatggttattttgctgt---aaatggcccccaagaatggtgctgatgtcctatttagggtccctaagcacaggaaggctgtgatgtgccttatagagaaaatccatgtgttagatacgcttctttcaggcaggagctacagcgctcat-gg----gggtctagtgttaacgaatcaagaatac-gcacacccagaaaaaggaaaag i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17099639 292 - 229590362 cgcgcgaaggtctgccctcacgttcggctctcataccgtgtacacatgtcctttttgcagtctcctgagtgc--tggtttt--------catatttttgtgctctctggtggtgattttgctgt---aaacagcccccaagaatggtgctgatgtcctatttagggtccctaagcacaagaaggctgtgatgtgccttatggagaaaatctatgtgttagatatgcttctttcaggcaggagctacagtgctcatggg----gggtctcgtgttaacgaatcaaaaatat-gcacacccagaaaaag---gaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223864502 295 - 227556264 cgcgcgaaggtctgccctcacgttgggctctcataccgtgcacacatgtcctttttgcagtctcctgagtgc--tggtttt--------catatttttgtgctctctggtggtgattttgctgt---aaacagcccccaagaatggtgctgatgtcctatttagggtccctaagcacaagaaggctgtgatgtgccttatggagaaaatctatgtgttagatatgcttctttcaggcaggagctacagtgctcatggg----gggtctcgtgttaacgaatcaaaaatat-gcacacccagaaaaaggaagaa i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82712805 294 + 85787240 cgcgcgaaggtctgccctcacgttcggctctcataccgtgcacacgtgccctttttgcagtctccttagtgc--tggtttt--------catatttttgtgctctctggtggtgattttgctgt---aaacagcccccaagaatggtgctgatgtcctatttagggtccctaagcacaagaaggctgtgatgtgccttatggagaaaatctatgtgttagatatgcttctttcaggcaggagctacagtgctcat-gg----gggtctcgtgttaacaaatcaaaaatat-gcacgcccagaaaaaggaagag i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14427628 303 - 49578535 cgggcagagctctgccttcactgtcggctctcataccatgcatacctgtcctttttgcagtctctttagtgctgtttttttttttttcccatatttttgtgctttctgatggtcattttggtgt---aaatggcccccaa-aatggtgctgatgtcctattcaggctccctaagcacaagaaga-tggaatgtgccttccagagaaagtacacgtgttagataagctgctttcaggcgtgagctacagcgctcgt-gg----gaatccagtgttaatgaatcaagaatacaGCACACCCAGAAAAAGGAAGAG i calJac3.chr19 I 11 C 0 s mm10.chr1 178911563 264 + 195471971 caggttgagcactgcc-tCACGT---GCTCTCG-----------------------------GCttcagtgc-----tttt--------gaattttttatgctttctgcccatgatttcactgtttgaaacgattccccggcatggtacggaagtgctttctagtgagaagaggcacaaaggggcagctctgtgcctcatagagaaaacatgagagttagctaagcttcgttcaggagtgagctcatgggctact-ggctgcaggttcaatgccgatgtagccattgcatgatacaccca--caggggaggag i mm10.chr1 C 0 C 0 s canFam3.chr7 36500798 263 + 80974532 ------caagcccgcgctc-----tgcctctctccctgtaaaca-----------------------agggccgtgttgtt--------tgtattcgtgtgat-tgtgttggtggtttcactgtttacagtggccccccagtgcggtgggggtgtc-----tggtgttccttggtgcaagaaggctgtgatgtgccttatggagaagttacttgtgctagagaagcttcgttcaggtgtgagtgatagtgctgtg-gg-catgagttcagtgttcatgaatcaacagtacggttcatccagaaaaaggaagag i canFam3.chr7 C 0 I 361 e papAnu2.chr1 16911153 100 - 220367699 I a score=5236.000000 s hg38.chr1_KI270759v1_alt 379164 2 + 425601 ga s panTro4.chr1 225137480 2 + 228333871 ga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226508293 2 - 229942017 GA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140398786 2 - 143122389 ga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17099931 2 - 229590362 ga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223864797 2 - 227556264 ga i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82713099 2 + 85787240 ga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14427931 2 - 49578535 GC i calJac3.chr19 C 0 C 0 s mm10.chr1 178911827 2 + 195471971 ga i mm10.chr1 C 0 I 425 e canFam3.chr7 36501061 361 + 80974532 I e papAnu2.chr1 16911153 100 - 220367699 I a score=149624.000000 s hg38.chr1_KI270759v1_alt 379166 68 + 425601 agcgcacagggcagccagcttgatgtcaccacgttacatccttttatccggtctttggtaagttttct s panTro4.chr1 225137482 68 + 228333871 agtGCACAGGGCAGCCAGCTTGATGTCACCACGTTACATCCTTTTATCCGGTCTTTGGTAAGttttct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226508295 68 - 229942017 AGTGCACGGGGCAGCCAGCTTGATGTCACCACGTTGCATCCTCTTATCTGGTCTTTGGTATGttttct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140398788 68 - 143122389 agtgcacAGGGCAGCCAGCTTGATGTCACCACATTACATCCTTTTATCCGGTCTTTGGTATGttttcg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17099933 68 - 229590362 agTGCACAGGGCAGCCAGCTTGATGTCACTACATTACATCCTTTTATCCGGTCTTTGGTATGTtttct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223864799 68 - 227556264 agtGCACAGGGCAGCCAGCTTGATGTCACTACATTACATCCTTTTATCCGGTCTTTGGTATGTtttct i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82713101 68 + 85787240 agtACACAGGGCAGCCAGCTTGATGTCACTACATTACATCCTTTTATCCGGTCTTTGGTATGTTttct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14427933 68 - 49578535 AGGACACGGGGCAACCAGTTTGATATCACAGTGGTACAGCTTTTGATCCTGTCTTTGCTGTGTTTTTT i calJac3.chr19 C 0 I 843 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e papAnu2.chr1 16911153 100 - 220367699 I a score=1911.000000 s hg38.chr1_KI270759v1_alt 379234 1 + 425601 t s panTro4.chr1 225137550 1 + 228333871 t i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226508363 1 - 229942017 t i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140398856 1 - 143122389 t i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17100001 1 - 229590362 t i rheMac3.chr1 C 0 I 2082 s macFas5.chr1 223864867 1 - 227556264 t i macFas5.chr1 C 0 I 141 s chlSab2.chr25 82713169 1 + 85787240 t i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e papAnu2.chr1 16911153 100 - 220367699 I a score=1365.000000 s hg38.chr1_KI270759v1_alt 379235 1 + 425601 t s panTro4.chr1 225137551 1 + 228333871 t i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226508364 1 - 229942017 t i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140398857 1 - 143122389 t i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223865009 1 - 227556264 t i macFas5.chr1 I 141 C 0 s chlSab2.chr25 82713170 1 + 85787240 t i chlSab2.chr25 C 0 I 220 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e rheMac3.chr1 17100002 2082 - 229590362 I e papAnu2.chr1 16911153 100 - 220367699 I a score=921.000000 s hg38.chr1_KI270759v1_alt 379236 6 + 425601 tc---tttt s panTro4.chr1 225137552 7 + 228333871 tc--ttttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226508365 9 - 229942017 ttttttttt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140398858 6 - 143122389 tc---tttt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223865010 6 - 227556264 tc---cttc i macFas5.chr1 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e rheMac3.chr1 17100002 2082 - 229590362 I e chlSab2.chr25 82713171 220 + 85787240 I e papAnu2.chr1 16911153 100 - 220367699 I a score=364355.000000 s hg38.chr1_KI270759v1_alt 379242 305 + 425601 ttttttttttgagacagagtctcgctctgtcgcccaggctgaagtgcagtggcgcgatcacggctcactgcaagctccacccc-ccgggttcacgccattctcctgcctcagcctcctgagtagctgggaatacaggtgcccgccaccacgcccagctaa-ttttttgtatttttggtagagatggggtttcaccgtgttagccaggatgttcttgatctcctgacctcatgatccacccacctcggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggccggtctttggtatgt s panTro4.chr1 225137559 305 + 228333871 ttttttttttgagacagagtctcgctctgtcgcccaggctggagtgcagcggcgcgatctcggctcactgcaagctccacccc-ccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccaccacgcccagctaa-ttttttgtatttttggtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccacccacctcagcctcccaaagtgctgggattacaggcatgagccnccgcgcccggccGGAAAAAGGTATGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226508374 297 - 229942017 ttttttttttgagacggagtctcactctgtcgcccaggctggagtgcagtggcgggatctcggctcactgcaagctccgccccgccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgcaaccacgcccggctaa-ttttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgacctcctgacctcatgatc---------cggcctcctaaagtgctgggattacaggcgtgagccaccgcgcccggccGGTCTTTGGTATGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140398864 306 - 143122389 ttttttttttgagacggagtctcgctctgtcacccaggctggagtgcagcagcgcgatctcagctcactgcaagctccacccc-ccgggttcactccattctcctgcctcagcctcctgagtagctgggaccacaggcatccgccaccacgcccggctaatttttttgtatttttagtagagatggggtttcaccatgttagccaggatggtctcgatctcctgaccttgtgatccgcccggcttggcctcccaaagggctgggattacaggcatgagccaccgtgcccggccGGTCTTTGGTATGT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223865016 306 - 227556264 ctttctttttgagatggagtcttgctctgtcacccaggctggagtgcagtggcacaatcttgactcactgcaagctccacttc-acaggttcagtccattctcctgcctcagcctcccaagtagctggaactgtaggcgcccgccagcacgcccggctaatttttttgtatttttagtagagatggggtttcattatgttagccaggatggtctcgatctcctgacctcatgatccacccaccttggcctcccaaagtgctgagattacaggcgtgagccaccgcacccggccAGTCTTTGGTATGT i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82713391 306 + 85787240 ttttttttttgagacagagtcttgctctgtcacccaggctggagtgcaatggcacaatcttggctcactgcaagctccacttc-ccgggttcactccattctcctgcctcagcctcccaagtagctggaactgtaggtgcccgccaccacgcccgggtaatttttttgtatttttagtagagatggggtttcattatgttagccaggatggtctcgatctcctgacctcgtgatccacccaccttggcctcccaaagtgctgagattacaggcgtgagccaccgcgcccggccAGTCTTTGGTATGT i chlSab2.chr25 I 220 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e rheMac3.chr1 17100002 2082 - 229590362 I e papAnu2.chr1 16911153 100 - 220367699 I a score=190375.000000 s hg38.chr1_KI270759v1_alt 379547 112 + 425601 tttcttggggacttacacagggtcacgtggagatacagggggatgcgccttcggcccatctgtatgtggggccactctggaaagtgctaaggtaacagctatagtacatgag s panTro4.chr1 225137864 109 + 228333871 TTTCTTGGGGACTTACACAGGGTCATGTGGAGATACAGAAGGATGCGCCTTCGGCCCATAAAAGAGTGGGGCCACTCTGGAA---GCTAAGGTAACAGCTGTAGTACATGAG i panTro4.chr1 C 0 I 1100 s ponAbe2.chr1 226508671 112 - 229942017 TTTCTTGGGGACTTACACAGGGTCACATGGAGATACAGGGGGATGTGCCTTCGGCCCATCCGTATGTGGGGCCACTCTGGAAAGTGCTCAGGTAACAGCTATAGTACATGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140399170 112 - 143122389 TTTCTTGGGGACTTACACAGGGTCATGTGGAGATACAGGGGGATGTGCCTTCGgcccatccgtatgtggggccactctggaaagtgctaaggggacagctgtagtacatgag i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223865322 110 - 227556264 TTTCTTGGAGACTTACACAGGGTCACGTGGAGAT--AGGGGCATGTGCCTttggcccatctgtatgtgggaccactctggaaagtgctaaggtaacacctatagtacatgag i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16911253 112 - 220367699 tttCTTGGGGACTTACACAGGGTCACGTGGAGATACAGGGGGATGTGCCTTCAGCCCATCTGTATGTGGGACCACTCTGGAAAGTGCTAAGGTAACACCTATAGTACATGAG i papAnu2.chr1 I 100 C 0 s chlSab2.chr25 82713697 112 + 85787240 TTTCTTGGGGACTTACACAGGGTCATGTGGAGATACAGGGGCATGTGCCTTCGgcccatctgtatgtgggaccactctggaaagtgctaaggtaacacctatagtacatgag i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e rheMac3.chr1 17100002 2082 - 229590362 I a score=936557.000000 s hg38.chr1_KI270759v1_alt 379659 760 + 425601 gaagccatggaagagatgaaaagtggctgaatgtgtggattcatcagatgatgagaacatttaatgtaatagatagcattggtgtgaggctagacaccaaagaaatgtacaatcatgttacccaagggaaggaaagtattaaacccttcttggctagtgttttattttaaagaaataccaaatataattcattattttgaagaaacgtattaaataaagcatcttattaacaaggttacgtattgaccagttgaagaaacttttgtcatcagaggttcacagaaacctaaaccatacgttaggttggtgcaaaagtaattgaaatgggccagatgcagtggctcacacctgtaatcccagcactttgggaggccgaggcgggcggatcgcctgaggtcaggagtttgagactagactggccaacatgggtgaaaccccgtctctactaaaaatacaaaaaattagctgggtgtggtggcgcgtgcctgtagtcccagctactccggaggctgaggcgggagaatcccctgaacctgggaggcggagattgcagtgagccgagatcgtgccgttgcactccagcctgggcaacagagcaagagtctgtcttaggaaaaaaagaaagaaaaaaaaagtcatcgaaatgacagaaaccgtaattacttttgcaccaaactgtatttcccctaagaacaatggcccagtatttacaaattcagtgttcacaaatattttatagaacacagctaccatgaataac s ponAbe2.chr1 226508783 756 - 229942017 GAAGCCGTGGAAGACATGAAAACTGGCTGAATGTGTAGATTCATCAAATGATGAGAAAATTTACTGTA----ATAGCATTCGTGTGAGGCTAGACATCAAAGAAATTTACAATCATGTTACCCAAGGGCAGGAAAGTATTAAACCCTTCTTGGCTAGTGTTTTATTTTAAAGAAATACCGAATATAATTCATTATTTTGAAGAAACATATTAAATAAAGCATCTTATTaacaaagttatgtattgtccaattgaagaaacttttgtcatcagaggttcacagaaacctaaaccATATGttaggttggtgcaaaagtaattgaaatgggccagacgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcgggtggatcgcctgaggtcaggagttcgagactagcctggctaacatgggtgaaaccccgtctctactaaaaatacaaaaaattagctgggtgtggtggcatgtgcctgtagtcccagctactccagaggctgaggcgggagaatcgcctgaacctgggaggcggaggttgcagtgagccgagatcatgctgttgcactccagcctgggcaacagagcaagagtctgtcttaggaaaaaaagaaagaaaaaaaaagtaatcgaaatgacaaaaatcgtaattacttttgcaccaaactatatttcccctaagaacaatggcccagtatttacaaattcagtgttcacaaatattttctagaacacagctaccatgaataac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140399282 744 - 143122389 gaagccatggaagagatgaaaagtggctgaatgtg--gattcatcagatgatgagaaaatgtaatgtaatagatagcattggtgggaggctagacaccaaagaaatttacaatcatgttgtccaagggcaggaaagtattaaacccttcttggctagtgttTtattttaaagaaatactgaatatagttcattatttcgaagaaacatattaaagaaagcatcttattaacaaggttatatattgaccaattgaagaaacttttgtcatcagaagttcacagaaacctaaaccATATGttaggttagtgcaaaggtaattgaaatgggccagacgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcgggcggatcac--gaggtcaggagttcgagactagcctggccaacatgggtgaaaccccatctctactaaaaatacaaaaaattagttgggtgtggtggtgcgcgcctgtagtcccagctactccggaggctgaggcgggagaattgcctgaacctgggaggcggaggttgcagtgagctgagatcatgccgttgcactccagcctgggcaacagagcaagagtccatcttaggaaaaaaagaaa------------aattgaaatgacaaaaaccgtaattacttttgtaccaaactatatttcccctaagaacaatggcccagtatttacaaattcagtgttcccaaatattttatagaacacagctaccatgaaaaac i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223865432 757 - 227556264 gaagcgatggaagagataaaaagtgattgaatgtgtggatttatcagatgttgagaaagtgtaatgcaatagatagcattggtgtgaggctagactccaaagaaattt--aatcatgttaccaaagggcaggaaagtattaaacccttcttggctagtgttTtattttagagaaatactgaatataattcattattttgaagaaacatattaaacaaagcatcttattaacaaggttatgtattgacccattgaagaaacttttatcatcagaggttcacagaaacctaaaccatatattaggttggtgcaaaagtaattgaaatgggccggacgcagtggctcatacctgtaatcccagcactttgggaggccaaggcgggcagatcacctgtggtcaggagtttgacaccagcctggccaacatgggtgaaactccatctctactaaaaatacaaaaaattagctgggcatggtggcacacacctgtagtcccagctactccagaggctgaggcaggagaatcacctgaacctgggaggcggaggttgcagtgagccgagatcgtgccgttgcactccagcctgggtgacagagcaagaatctgtcttaggaaaaaaaagaa-aaaaaaaaagtaattgaaatgacaaaaaccataattacttttacaccaaactatatttcccctaagaacaatggcccagtatttacaaattcagtgttcacaaatattttatagaacaccgctaccatgaataac i macFas5.chr1 C 0 I 710 s papAnu2.chr1 16911365 757 - 220367699 GAAGTGATGGAAGAGATAAAAAGTGACtgaatgtgtggattcatcagATGTTGAGAAAGTGTAATGCAATAGATAGCATTGGTGTGAGGCTAGACTCCAGAGAAATTT--AATCATGTTACCAAAGGGCAGGAAAGTATGAAACCCTTCCTGGCtagtgttttattttagagaaatactGAATATAATTCATTCTTTTGAAGAAACATATTAAACAAAGCATCTTATTAACAAGGTTATGTATTGACCCATTGAAGAAACTTTTATCATCAGAGGTTCACAGAAACCTAAAccatatattaggttggtgcaaaagtaattgaaatgggccggacgcagtggctcatacctgtaatcccagcactttgggaggccgaggcgggcagatcacctgtggtcaggagttcgacaccagcctggccaacatgggtgaaactccatctctactaaaaatacaaaaaattagctgggcatggtggcacacacctgtagtcccagctactccagaggctgaggcaggagaatcacctgaacctgggaggcagaggttgcagtgagccgagatcgtgccattgcactccagcctgggtgacagagcaagagtccgtcttaggaaaaaaagaaa-aaaaaaaaagtaattgaaatgacaaaaaccaaaattacttttacaccaaacTATATTTCCCCTAAGAACAATGGCCCAGTATTTACAAATTCAgtgttcacaaatattttatagaacacAGCTACCATGAATAAC i papAnu2.chr1 C 0 I 183 s chlSab2.chr25 82713809 754 + 85787240 gaagcgatggaagagataaaaagtgattgaatgtgtggatttatcagatgttgagaaagtgtaatgcaatagatagcattggtgtgaggctagactccaaagaaattt--aatcatgttaccaaagggcaggaaagtatgaaacccttcttggctagtgttTtattttacagaaatactgagtataattcattattttgaagaaacatattaaacaaagcatcttattaacaaggttatgtattgacccattgaagaaacttttatcatcagaggttcacagaaacctaaaccatatattaggttggtgcaaaagtaattgaagtgggccggacgcggtggctcatacctgtaatcccagcactttgggcggccgaggcgggcagatcacctgaggtcaggagttcgacaccagcctggccaacatgggtgaaactctgtctctactaaaaatacaaaaaattagctgggcatggtggcacacacctgtagtcccagctactccggaggctgaggcaggagaatcacctgaacctgggaggcggaggttgcagtgagccgagatcatgccgttgcactccagcctgggtgacagagcaagaatccgtcttaggaaaaaaaag----aaaaaaaagtaattgaaatgacaaaaaccataattacttttacaccaaactatatttcccctaaaaacaacggcccagtatttacaaattcagtgttcacaaatattttatagaacacagctaccatgaataac i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e rheMac3.chr1 17100002 2082 - 229590362 I e panTro4.chr1 225137973 1100 + 228333871 I a score=5070.000000 s hg38.chr1_KI270759v1_alt 380419 5 + 425601 aagag s ponAbe2.chr1 226509539 5 - 229942017 aagag i ponAbe2.chr1 C 0 T 5 s nomLeu3.chr5 140400026 5 - 143122389 aagag i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223866899 5 - 227556264 AAGAC i macFas5.chr1 I 710 C 0 s papAnu2.chr1 16912305 5 - 220367699 AAGAC i papAnu2.chr1 I 183 C 0 s chlSab2.chr25 82714563 5 + 85787240 aagac i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e rheMac3.chr1 17100002 2082 - 229590362 I e panTro4.chr1 225137973 1100 + 228333871 I a score=5503.000000 s hg38.chr1_KI270759v1_alt 380424 9 + 425601 ctgactgTA s nomLeu3.chr5 140400031 9 - 143122389 ctgattgTA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223866904 9 - 227556264 CTGACTGTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912310 9 - 220367699 CTGACTGTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714568 9 + 85787240 gtgactCTG i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e rheMac3.chr1 17100002 2082 - 229590362 I e ponAbe2.chr1 226509544 5 - 229942017 T e panTro4.chr1 225137973 1100 + 228333871 I a score=47298.000000 s hg38.chr1_KI270759v1_alt 380433 42 + 425601 TATGATCACAACCTAACTGAGCAGAACTCACCCTCCACTACT s nomLeu3.chr5 140400040 42 - 143122389 TATGATCACAACCTAACCGAGCAGAACTCGCCCTCCACTGCC i nomLeu3.chr5 C 0 T 56 s rheMac3.chr1 17102084 42 - 229590362 TATGAACACAACCCAACCGAGCAGAACTCGCCCTGCACTACT i rheMac3.chr1 I 2082 C 0 s macFas5.chr1 223866913 42 - 227556264 TATGAACACAACCCAACCGAGCAGAACTCGCCCTCCACTACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912319 40 - 220367699 --CGATCACAACCCAACTGAGCAAAACTCACCCTCCACTACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714577 42 + 85787240 TATGAACACAACCCATCGGAGCCGAACTCACCCTCCACTACT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e ponAbe2.chr1 226509544 5 - 229942017 T e panTro4.chr1 225137973 1100 + 228333871 I a score=4730.000000 s hg38.chr1_KI270759v1_alt 380475 5 + 425601 CATGT s rheMac3.chr1 17102126 5 - 229590362 CATGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223866955 5 - 227556264 CATGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912359 5 - 220367699 CATGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714619 5 + 85787240 CATGT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e nomLeu3.chr5 140400082 56 - 143122389 T e ponAbe2.chr1 226509544 5 - 229942017 T e panTro4.chr1 225137973 1100 + 228333871 I a score=97281.000000 s hg38.chr1_KI270759v1_alt 380480 61 + 425601 AAGACCTGACTGTATATGATCACAACCTAACTGAGCAGAACTCACCCTCCACTACTCATGT s ponAbe2.chr1 226509539 61 - 229942017 aagagctgactgTATACGATCACAACCTAACTGAGCAGAACTCACCCTCCACTACTCATGT i ponAbe2.chr1 T 5 T 61 s nomLeu3.chr5 140400026 61 - 143122389 aagagctgattgTATATGATCACAACCTAACCGAGCAGAACTCGCCCTCCACTGCCCATAT i nomLeu3.chr5 T 56 T 61 s rheMac3.chr1 17102131 61 - 229590362 AAGACCTGACTGTGTATGAACCCAACCCAACTGAGCAGAACTCGCCCTCCACTACTCACGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223866960 61 - 227556264 AAGACCTGACTGTGTATGAACACAACCCAACCGAGCAGAACTCGCCCTCCACTACTCATGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912364 61 - 220367699 AAGACCTGACTGTGTATGAACATAACCCAACCGAGCACAACTCACCCTCCACTAGTCATGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714624 59 + 85787240 AAGACCTGAC--TGTATGATCACAACCCAATCGAGCAGAACTCACCCTCCACTACTCATGT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e panTro4.chr1 225137973 1100 + 228333871 I a score=7793.000000 s hg38.chr1_KI270759v1_alt 380541 17 + 425601 AAGACCTGACTGTAT-----------------------------------------------------------AT s ponAbe2.chr1 226509539 17 - 229942017 aagagctgactgTAT-----------------------------------------------------------AC i ponAbe2.chr1 T 61 C 0 s nomLeu3.chr5 140400026 17 - 143122389 aagagctgattgTAT-----------------------------------------------------------AT i nomLeu3.chr5 T 61 C 0 s rheMac3.chr1 17102192 15 - 229590362 AAGACCTGACTGTAT------------------------------------------------------------- i rheMac3.chr1 C 0 I 944 s macFas5.chr1 223867021 15 - 227556264 AAGACCTGACTGTAT------------------------------------------------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912425 15 - 220367699 AAGACCTGACTGTAC------------------------------------------------------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714683 74 + 85787240 AAGACCTGACTGTATGAACACAACCCAACCGAGCAGAACTCGTCCTCCACAACTCATGTAAGACCTGACTGTAT-- i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e panTro4.chr1 225137973 1100 + 228333871 I a score=76402.000000 s hg38.chr1_KI270759v1_alt 380558 44 + 425601 GATCACAACCTAACTGAGCAGAACTCACCCTCCACTACTCATGT s ponAbe2.chr1 226509556 44 - 229942017 GATCACAACCTAACTGAGCAGAACTCACCCTCCACTACTCATGT i ponAbe2.chr1 C 0 T 61 s nomLeu3.chr5 140400043 44 - 143122389 GATCACAACCTAACCGAGCAGAACTCGCCCTCCACTGCCCATAT i nomLeu3.chr5 C 0 T 61 s rheMac3.chr1 17103151 44 - 229590362 GACCACAACCCAGCCGAGCAGAACTCGCCCTCCACTACTCACGT i rheMac3.chr1 I 944 C 0 s macFas5.chr1 223867036 44 - 227556264 GAACACAACCCAACCGAGCAGAACTCGCCCTCCACTACTCATGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912440 44 - 220367699 GATCACAACCCAACCGAGCACAACTCACCCTCCACTACTCATGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714757 44 + 85787240 GAACACAACCCAACCGAGCAGAACTCACCCTCCACTACTCATGT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e panTro4.chr1 225137973 1100 + 228333871 I a score=99760.000000 s hg38.chr1_KI270759v1_alt 380602 61 + 425601 AAGACCTGACTGTATATGATCACAACCTAACTGAGCAGAACTCACCCTCCACTACTCATGT s ponAbe2.chr1 226509539 61 - 229942017 aagagctgactgTATACGATCACAACCTAACTGAGCAGAACTCACCCTCCACTACTCATGT i ponAbe2.chr1 T 61 C 0 s nomLeu3.chr5 140400026 61 - 143122389 aagagctgattgTATATGATCACAACCTAACCGAGCAGAACTCGCCCTCCACTGCCCATAT i nomLeu3.chr5 T 61 T 61 s rheMac3.chr1 17103195 59 - 229590362 AAGACCTGAC--TGTATGATCACAACACAACCGAGCAGAACCCGCCCTCCACTACTCATGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223867080 61 - 227556264 AAGACCTGACTGTGTATGAACACAACCCAACCGAGCAGAACTCGCCCTCCACTACTCATGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912484 61 - 220367699 AAGACCTGACAGTGTATGAACACAACCCAACCGAGCACAACTCACCCTCCACTACTCATGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714801 61 + 85787240 AAGACCTGACTGTGTATGATCACAACCTAACCGAGCAGAACTCACCCTCCACTACTCATGT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e panTro4.chr1 225137973 1100 + 228333871 I a score=7833.000000 s hg38.chr1_KI270759v1_alt 380663 4 + 425601 AAGA s ponAbe2.chr1 226509600 4 - 229942017 AAGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140400026 4 - 143122389 aaga i nomLeu3.chr5 T 61 C 0 s rheMac3.chr1 17103254 4 - 229590362 AAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223867141 4 - 227556264 AAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912545 4 - 220367699 AAGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714862 4 + 85787240 AAGA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e canFam3.chr7 36501061 361 + 80974532 I e calJac3.chr19 14428001 843 - 49578535 I e panTro4.chr1 225137973 1100 + 228333871 I a score=1225.000000 s hg38.chr1_KI270759v1_alt 380667 1 + 425601 C s ponAbe2.chr1 226509604 1 - 229942017 C i ponAbe2.chr1 C 0 T 61 s nomLeu3.chr5 140400030 1 - 143122389 g i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17103258 1 - 229590362 C i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223867145 1 - 227556264 C i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912549 1 - 220367699 C i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714866 1 + 85787240 C i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36501422 1 + 80974532 C i canFam3.chr7 I 361 C 0 e mm10.chr1 178911829 425 + 195471971 I e calJac3.chr19 14428001 843 - 49578535 I e panTro4.chr1 225137973 1100 + 228333871 I a score=81967.000000 s hg38.chr1_KI270759v1_alt 380668 53 + 425601 CTGACTGTATATGATCACAACCTAACTGAGC-------------AGAACTCACCCTCCACTACTCA s ponAbe2.chr1 226509544 53 - 229942017 ctgactgTATACGATCACAACCTAACTGAGC-------------AGAACTCACCCTCCACTACTCA i ponAbe2.chr1 T 61 C 0 s nomLeu3.chr5 140400031 53 - 143122389 ctgattgTATATGATCACAACCTAACCGAGC-------------AGAACTCGCCCTCCACTGCCCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17103259 53 - 229590362 CTGACTGTGTATTAACACAACACAACCGAGC-------------AGAACTCGCCCTGCACTACTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223867146 51 - 227556264 CTGAC--TGTATGATCACAACCCAACCGAGC-------------AGAACTCGCCCTCCACTACTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912550 51 - 220367699 CTGAC--TGTACGATCACAACCCAACCGAGC-------------AGAACTCGCCCTCCACTACTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714867 53 + 85787240 CTGACTGTGTATGATCACAACCCAGCCGAGC-------------AGAACTCACCCTCCACTACTCA i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36501423 60 + 80974532 CTGGCGGTGT----TCACTGCCTCACTATGCACAGGGACTTGAAAGAACACAACCCCCAAGAAC-- i canFam3.chr7 C 0 C 0 e mm10.chr1 178911829 425 + 195471971 I e calJac3.chr19 14428001 843 - 49578535 I e panTro4.chr1 225137973 1100 + 228333871 I a score=6669.000000 s hg38.chr1_KI270759v1_alt 380721 3 + 425601 TGT s ponAbe2.chr1 226509597 3 - 229942017 TGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140400084 3 - 143122389 TAT i nomLeu3.chr5 C 0 T 5 s rheMac3.chr1 17103312 3 - 229590362 TGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223867197 3 - 227556264 TGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912601 3 - 220367699 TGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714920 3 + 85787240 TGT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178912254 3 + 195471971 tat i mm10.chr1 I 425 C 0 s canFam3.chr7 36501483 3 + 80974532 GGT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14428001 843 - 49578535 I e panTro4.chr1 225137973 1100 + 228333871 I a score=2392.000000 s hg38.chr1_KI270759v1_alt 380724 9 + 425601 AAGA-------------------------------------------------------------CCTGA s panTro4.chr1 225139073 9 + 228333871 aaga-------------------------------------------------------------gctga i panTro4.chr1 I 1100 C 0 s ponAbe2.chr1 226509600 9 - 229942017 AAGA-------------------------------------------------------------CCTAA i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17103315 9 - 229590362 AAGA-------------------------------------------------------------CCTGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223867200 9 - 227556264 AAGA-------------------------------------------------------------CCTGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912604 9 - 220367699 AAGA-------------------------------------------------------------CCTGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714923 70 + 85787240 AAGACCTGACTGTGTATGATCACAACCTAACCGAGCAGAACTCGTCCTCCACTACTCATGTAAGACCTGA i chlSab2.chr25 C 0 C 0 s mm10.chr1 178912257 9 + 195471971 aaga-------------------------------------------------------------gttaa i mm10.chr1 C 0 C 0 s canFam3.chr7 36501486 9 + 80974532 AAGG-------------------------------------------------------------ATGGA i canFam3.chr7 C 0 C 0 e calJac3.chr19 14428001 843 - 49578535 I e nomLeu3.chr5 140400087 5 - 143122389 T a score=98067.000000 s hg38.chr1_KI270759v1_alt 380733 47 + 425601 CTGTATATGATCACAACCTAA-CTGAGCAGAACTCACCCTCCACTGCG--- s panTro4.chr1 225139082 47 + 228333871 ctgTATATGATCACAACCTAA-CTGAGCAGAACTCACCCTCCACTGCC--- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226509609 47 - 229942017 CTGTATATGAGCACAACCTAA-CTGAGCAGAACTCACCCTCCACTGCC--- i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17103324 45 - 229590362 CTG--GATGATCACAACCCAG-CCGAGCAGAACTCACCCTCCACTGCC--- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223867209 45 - 227556264 CTG--TATGATCACAACCCAG-CCGAGCAGAACTCACCCTCCACTGCC--- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912613 45 - 220367699 CTG--TACGATTACAACCCAA-CCGAGCAGAACTCACCCTCCACTGCC--- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82714993 45 + 85787240 CTG--TATGAACACAACCCAA-CCGATCAGAACTCACCCTCCAGTGCC--- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14428844 47 - 49578535 CTATGTATGATCACAACCGAT-CTGAACAGGACTCATCCTCCACCTCC--- i calJac3.chr19 I 843 C 0 s mm10.chr1 178912266 47 + 195471971 ctgCATATGGTCATAGCCTAATCCAAACAGAATCCATCTTCTACTTC---- i mm10.chr1 C 0 C 0 s canFam3.chr7 36501495 49 + 80974532 CTG-AGATGATGACAGCTTCC-CCCAATGGGATCTGTCTTCTCCTTGAAGA i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140400087 5 - 143122389 T a score=442020.000000 s hg38.chr1_KI270759v1_alt 380780 184 + 425601 CATATTGAAGACAGAGCCCAAGACGCATCCAGGTGCAACGTCTCTGCTAAGAATGTGTGCCAGGAATGGGGCCTGGCTTCCTCGTCGAGTGC---------GGCTGTCCGTGG-GTTTCTGCTAGACAGATAA----CGTTCTGAA-GGAGTTAAACTTTCACAG---ct----cctcctcctcctcctcct--------cctcTAT-ATCCCTT s panTro4.chr1 225139129 167 + 228333871 CATATTGAAGACAGAGCCCAAGACGCATCCAGGTGCAGTGTCTCTGCTAAGAATGTGTGCCAGGAATGGGAC---------------AGTGC---------GGCTGTCCATGG-ATTTCTGCTAGACAGATAGATAGCGTTTGGAA-GGAGTTAAACTTTCACAG---CT----CCTGTTCCTCCTCCTC--------------TAT-ATCCCTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226509656 179 - 229942017 CATACTGAAGACAGAGCCCAAGACGCATCCAGGTGCAGTGTCTCTGCTAAGAATGTGTGCCAGGAATGGGACCTGGCTTCCTCGTCGAGTGT---------GGCTGTCCATGG-ATTTCTGCTAGACAGATAA----CGTTTTGAA-GGAGTTAAACTTTCCCAG---CT----CCTGCTCCTCCTCCTC--------------TATAATCCCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140400082 162 - 143122389 CATATTGAAGACAGAGCCCAAGACGCATCCAGGTGCAGCGTCTCTGCTAAGAATGTGTGCCAGGAATGGGACCTGGCTTCCTCGTCGAGTGC---------GGC-----------------CTAGAGAGAGAA----CGTTCTGAA-GGAGTTAAACTTTCACAG---CT----CCTGCTCCTCCTCCTC--------------TAT-ATCCCTT i nomLeu3.chr5 T 5 C 0 s rheMac3.chr1 17103369 175 - 229590362 CATATGGAAGACAGAGCCCAAGATGCATCCAGGTGCAGTGTCTCTGCAAAAAATGTATTCCAGGAATGGGGTCTGGCTTCCTCGTTGAGTGT----------GCTGTCCATGA-ATTTCTGCTAGATAGACAA----CATTTTGAAGGGATTTAAACGTTCACAG---CT----CTTGCTCCTCCTC-----------------TAT-ACCCCGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223867254 175 - 227556264 CATATGGAAGACAGAGCCCAAGATGCATCCAGGTGCAGTGTCTCTGCAAAAAACGTATTCCAGGAATGGGGTCTGGCTTCCTCGTTGAGTGT----------GCTGTCCATGA-ATTTCTGCTAGATAGACAA----CATTTTGAAGGGATTTAAACGTTCACAG---CT----CTTGCTCCTCCTC-----------------TAT-ACCCCAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912658 175 - 220367699 CATATGGAAGACAGAGCCCAAGACGCATCCAGGTGCagtgtctctgcaaaaaatgtaTGCCAGGAATGGGGTCTGGCTTCCTCGTTGAGTGT----------GCTATCCATGA-ATTTCTGCTAGATAGACAA----CATTTTGAAGGGATTTAAACGTTCACAG---CT----CTTGCTCCTCCTC-----------------TAT-ACCCCGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82715038 175 + 85787240 CATATCGAAGACAGAGCCCAAGACGCATCCAGGTGCAGTGTCTCTGCAAAAAATGTATGCCAGGAATGGGGTCTGGCTTCTGCGTTGAGTGT----------GCTGTCCATGA-ATTTCTGCTAGACAGACAA----CATTTTGAAGGGATTTAAACGTTCACAG---CT----CTTGCTCCTCCTC-----------------TAT-ACCCCGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14428891 179 - 49578535 CACATTGAAGACAGAGCCCAAGATGCATCCAGGTGTGGTGTGTCTGCTGAGAATGTGTGCCAGGAATGGGACCTGGCTTCCTCGTCGAGTGC---------TGGTGTCCATGA-ATTTCTGCTGGATTAGATG----CGTTTTGAAGGGAGTTAAATGTTCACGG---CT----CCTGCTCCCTCTCCTC--------------TGT-ACCCTCT i calJac3.chr19 C 0 I 303 s mm10.chr1 178912313 132 + 195471971 -----------------CTGTGGTTCACTCAGATAAACTATCTTTGCTAA--------GTCAAGACTGGCCCCCAACCCCCTTCCTGA--------------GACATCCCTG--------------CAGAGTA----TACTTTGAGGGGAGTTAAATGTGATCAGATACC----CCCACACTTCCTCCCT--------------TTT-------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36501544 202 + 80974532 CATGGGGAAGACGAAGCCCCAGCCCCATCCGGGTGCAGTGTCCCAGCTAAGTGTGTCTGCCGGGGATGGGACCTGACTTCCTGCCTGGCCATCAGCTCCAGGAGCGTCCCTAATGCACCTGCTGGA-----AA----CATTGTGAAGGATGTTACATGTTTACAG---CTGGGCCTAGATCCTCCTGCACACTCCACTTACCtgtct-atccatt i canFam3.chr7 C 0 C 0 a score=2955.000000 s hg38.chr1_KI270759v1_alt 380964 1 + 425601 A s panTro4.chr1 225139296 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226509835 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140400244 1 - 143122389 A i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17103544 1 - 229590362 A i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223867429 1 - 227556264 A i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912833 1 - 220367699 A i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82715213 1 + 85787240 A i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14429373 1 - 49578535 A i calJac3.chr19 I 303 C 0 s mm10.chr1 178912445 1 + 195471971 C i mm10.chr1 C 0 C 0 s canFam3.chr7 36501746 1 + 80974532 a i canFam3.chr7 C 0 I 340 a score=44343.000000 s hg38.chr1_KI270759v1_alt 380965 13 + 425601 CCTCGCCACGTTC s panTro4.chr1 225139297 13 + 228333871 CCTCGCCACTTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226509836 13 - 229942017 CCTCTCCACTTTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140400245 13 - 143122389 CCTCGCCACTTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17103545 13 - 229590362 CCTCACCACTTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223867430 13 - 227556264 CCTCACCACTTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912834 13 - 220367699 CCTCACCACTTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82715214 13 + 85787240 CCTCACCACTTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14429374 13 - 49578535 CCTCACCACTTTC i calJac3.chr19 C 0 C 0 s mm10.chr1 178912446 13 + 195471971 TTTTACCACTTCT i mm10.chr1 C 0 C 0 e canFam3.chr7 36501747 340 + 80974532 I a score=5108273.000000 s hg38.chr1_KI270759v1_alt 380978 1450 + 425601 ATC-ACTGGTCATTTTGCTGGAAGGGAAGCCCTGGTATA-TTCTTACATTGCTCTGGAAGTGAGCTTT----AGCCCAGCGTCGCCAAACTTACACCTTAATTGATCCCAGAT--GAGAAGGAAAAGCTATTGCTCTTACCCCACAGTCTTCCCTCCCTGAGGCCAGAAGCAGGTCACGT--GTAAAATGGT----CTGC-------------TCTCTGCTGACAGTGGCCTGAGTCTCCCATAGTGTCTGCTGAGCTGGATAGT--------CCCTCTCCAGGG--AGCTTTGCAGGGGATGGGTGAT-------------GAGACATGGACATGGGGACGAATTCCTCTCATCTGGAATCGCAGACACAGCATGGAGATATGAGCACGCGGCATGGG-----AAATAGGCTTCCTCAGCCCTTCAGGATCAG----GGAACGTGCCAGAGATGCAATGACATTTGGCAGCAGTTGAGAGTATGAGTGCTGTTGATGAAATAAACAGAGG-CCTT-TAAAAGCAAGGCAGGAAAAATGCTGGGACGAGTACAGGAACAGAAAACC---AGCCATTTCTCCAGGTCTATTC---AAAGACGTAGCAACACTCCCTGCAAACCCCAGGGCCTCATTATCACCACTCAG---------------------------------------------------------------------GGCAGTGGCCCCGCACAGCACCTGCACAGTTGCCAGAGGAGGCCTCTCTATAGG-AAGTGCTGC-TTTCTGTTGTGGA-TAGAGTGACTGGCTGGGCCTC--TCT-CTGTGTTTCTCCCCTAGTCTTCAGGAATATGAATGCCTTTTCCTTCAGTGCTACTAGGTGCAAATATGCGAGTTAAGGGACAATGCCAATAAAGTAGCCGCAGTTTCCTGGCTAAA---GGAACTGTGCAGGTATTAAAAACCCACCGATCTTTAATCCAGGTTCGTGGCAGGGGGACTCCTTTTTGTTGCAA-GATTG-TCTGTGTGTGGAAACCC-TGGAGAAAGGCCACACGTGCAGTCAGCAAGCCGAGTCACCAGGCACAGAGCCC-TTTCTCCTGATCCCCTCCTCTTGTTTCTATTCCCAGGCCTCATTATGTATAATGTC------ACAGACACAC------ACGCCCAGGAACATCCCATCACAGCCAGGACAGAAGCGCCAAGGGAGGTGCTTTGCACAGATTCCAT-CTTGGAGTTAGAAGCACTTGCTCGGTGCTTGCCAACTACAAATAGCCCCATGCTGGAAAATGATGCTAATTAGTATGCCATT-----------AAAAAGG----------------GTGGGGGGA-----CCACCACCCACAACAAAATG-GCCGTGTGCAGGCCTGAAGCCCTGCCCTGAGGGCCACAGGGAAGCATGG-CCGCTAATGCAGCC-TAATTCACTTTGTTTGGCAGAGAGAGCAAGCTCGCCATGTTGCTGCGGGAGTCTCTGGGGAACATGAACTGCCGTACCACCATGATCGCGCACATCTCGGCCGCGGTCGGGAGCTACGCGGAGACCCTGTCCACCATCCAGATTGCATCGAGAGTCTTGAGGATGAAGAAAAAGAAGACGAAGGTAAGGAG s panTro4.chr1 225139310 1448 + 228333871 ATC-ACTGGTCATTTTGCTGGAAGGGAAGCCCTGGTATA-TTCTTACATTGCTCTGGAAGTGAGCCTT----AGCCCAGCGTTGCCAAACTTACACCTTAATTGGTCCCAGAT--GAGAAGGAAAAACTATTGCTCTTACCCCACAGTCTTCCCCCCCTGAGGCCAGAAGCAGGTCACGT--GTAAAATGGT----CTGC-------------TCTCTGCTGACAGTGGCCTGAGTCTCCCACAGTGTCTGCTGAGCTGGATAGT--------CCCTCTCCAGGG--AGCTTTGCAGGGGATGGATGAT-------------GACACATGGACATGGGGACGAATCCGTCTCATCTGGAATCGCAGACACAGCATGGAGATATGAGCATGCGGCATGGG-----AAATAGGCTTCCTCAGCC-TTCAGGATCAG----GGAACATGCCAGAGATGCAATGACATTTGGCAGCAGTTGAGAGTATGAGTGCTGTTGATGAAATAAACAGAGG-CCTT-TAAAAGCAAGGCAGGAAAAATGTTGGGACGAGTACAGGAACAGAAAAAC---AGCCATTTCTCCAGGTCCATTC---AAAGACTTAGCAATGCTCCCTGCAAACCCCAGGGCCTCATTATCACTACTCAG---------------------------------------------------------------------GGCAGTGGCCCCGCACAGCACCTGCACAGTTGCCAGAGGAGGCCTCTCTATAGG-AAGTGCTGC-TTTCTGTTGTGGA-TAGAGTGACTGGCTGGGCCTC--TCT-CTGTGTTTCTCCCCTAGTCTTCAGGAATATGAATGCCTTTTCCTTCAGTGCTACTAGGTGCAAATATGCGAGTTAAGGGACAATGCCAATAAAGTAGCCGCAGTTTCCTGGCTAAA---GGAACTGTGCAGGTATTAAAAACCCACAGATCTTCAATCCAGGTTCGTGGCAGGGGGACTCCTTTTTGTTGCAA-GATTG-TCTGTGTGTGGAAACCC--GGAGAAAGGCCACACATGCAGTTAGCATGCCGAGTCACCAGGCACAAAGCCC-TTTCTCCTGATCCCCTCCTCTTGTTTCTATTCCCAGGCCTCATTATGTGTAATGTC------ATAGACACAC------ACGCCCAGGAACATCCCATCACAGCCAGGACAGAAGCGCCAAGGGAGGTGCTTTGCACAAATTCCAT-CTTGGAGTTAGAAGCACTTGCTCGGTGCTTGCCAACTACAAATAGCCCCATGCTGGAAAATGATGCTAATTAGTATGCCATT-----------AAAAAGG----------------GGGGGGGGA-----TCACCACCCACAACAAAATG-GCCGTGTGCAGGCCTGAAGCCCTGCCCTGAGGGCCACAGGGAAGCATGG-CCGCTAATGCAGCC-TAATTCACTTTGTTTGGCAGAGAGAGCAAGCTCGCCATGTTGCTGCGGGAGTCTCTGGGGAACATGAACTGCCGTACCACCATGATCGCGCACATCTCGGCCGCGGCCGGGAGCTACGCGGAGACCCTGTCCACCATCCAGATTGCATCGAGAGTCTTGAGGATGAAGAAAAAGAAGACGAAGGTAAGGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226509849 1514 - 229942017 ATC-ACTGGTCATTTTGCTGGAAGGCAAGCCCTGGTATA-TTCTTACATTGCTCTGGAAGTGAGCCTT----AGCCCAGCATCGCCAAACGTACACCTTAATTGATCCCAGAT--GAGAAGGAAAAGCTATTGCTCTTACCCCACAGTCTTCCCTCCCTGAGGCCAGAAGCAGGTCATG---GTGAAATGGT----CTGC-------------TCTCTGCTGACAGTGGCCTGAGTCTCCCACAGTGTCTGCTGAGCTGGATAGT--------CCCTCTCCAGGG--AGCTTTGCAGGGGACGGGTGAT-------------GAGACGTGGACATGGGGACGAATTCCTCTCATCTGGTATCGCAGACACAGCATAGAGATATGAGCACGCGGCATGGG-----AAATAGGCTTCCTCAGCC-TTCAGGATCA-----GGAACGTGCCAGAGATGC-ATGACATTTGGCAGTAGTTGAGAGTATGAGTGCTGTTGATGAAATAAACAGAGG-CCTT-TAAAAGCAAGGCAGGAAAAATGTTGGGACGAGTATAGGCACAGAAAAAC---AGCCATTTCTCCAGGTCAATTC---AAAGACTTAGCAACGCTCCCGGCAAACCCCAGGGCCTCATTATTACCACTCGAGGCAGTGGCCCCGCACAGCACCTGGCAGTGGCCCCGCAAAGCACCTGGCAGTGGCCCCGCACAGCACCTGGCAGTGGCCCCGCACAGCACCTGCACAGTTGCCAGAGGAGGCCTCTCTATAGG-AAGTGCTGC-TTTCTGTTGTGGA-TCCAGTGACTGGCTGGGCCTC--TCT-CTGTGATTCTCCCCTAGTCTTCAGGAATATGAATGCCTTTTTCTTCACTGCTACTAGGTGCAAATATGTGAGTTAAGGGACAATGCCAATAAAGCAGCCGCAGCTTCCTGGCTAAA---GGAACTGTGCAGATATTAAAAACCCACAGATCTTCAATCCAGGTTCGTGGCCGGGGGACTCCTTTGTGTTGCAAGGATTG-CCTGTGTGTGGAAACCC-TGGAGAAGGGCCACACGTGCAGTTAGCATGCTGAGTCACCAGTCACAAAGCCA-TTTCTCCTGATGCCCTCCTCTTGTTTCTATTCCCAGGCCTCATTATGTGTAATGTC------ATAGACACAC------ACGCGCAGGAACATCCCATCACAGCCAGGACAGAAGCGCCAAGGGAGGTGCTTTGCACAAATTCCAT-CTTGGAGTTAGAAGCACTTGCTCGGTGCTTGCCAACTACAAATAGCCCCATGCTGGAAAATGATGCTAATTAGTATGCCATT-----------AAAAAGG------------------GGGGGGA-----CCACCACCCACAACAAAATG-ACTGTGTGCAGGCCTGAAGCCCTGCCCTGAGGGCCACAGAGAAGCATGG-CCGCTAATGCAGCC-TAATTCACTTTGTCTGGCAGAGAGAGCAAGCTCGCCATGTTGCTGAGGGAGTCTCTGGGGAACATGAACTGCCGTACCACCATGATCGCGCACATCTCGGCCGCGGCCGGGAGCTACGCGGAGACCCTGTCCACCATCCAGATTGCATCGAGAGTCTTGAGGATGAAGAAAAAGAAGACGAAGGTAAGGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140400258 1447 - 143122389 ATC-ACTGCTCATTTTGCTGGAAGGGAAGCCCTGGTATA-TTCTTACATTGCTCTGGAAGTGAGCCTT----AGCCCAGCGTCTCCAAACTTACACCTTAATTGATCCCAGAT--GGGAAGGAAAAGCTATTGCTCTTACCCCCCAGTCTTCCCTCCCTGAGGCCAGAAGCAGGTCATGT--GTAAAATGGT----CTGC-------------TCTCTGCTGACAGTGGCCTGAGTCTCCCACAGTGTGTGCTGAGCTGGATAGT--------CCCTCTCCAGGG--AGCTTTGCAGGGGATGGATGAT-------------GAGACATGGACATGGGGACGAATGCCTCTCATCTGGCATTGCAGACACAGCATAGAGATATGAGCGCGCAGCATGGG-----AAACAGGCTTCCTCAGCC-TTCAGGATCA-----GGAACGTGCCAGAGATGCAGTGACATTTGGCAGCAGTTGAGAGTATGAGTGCTGTGGATGAAATAAACAGAGG-CCTT-TAAAAGCAAGGCAGGAAAAATGGTGGGACGAGTATAGGAACAGAAAAAC---AGCCATTGCTCCAGGTCAATTC---AAAGACTTAGCAACGCTCCCTGCAAACCCCAGGGCCTCATTATCACCACTCAG---------------------------------------------------------------------GGCAGTGGCCCCACACAGCACCTGCAAAGGCACCAGAGGAGGCCTCTCTATAGG-AAGTGCTGC-TTTCTGCTGTGGA-TCAAGTGACTGGCTGGGCCAC--TCTCCTGTGTTTCTCCCCTGGTCTTTAGGAATATGAATGCCTTTTCCTTCAGTGCTACTAGGTGCAAATATGCGAGTTAAGGGACGATGCCAGTAAAGTAGCCGCAGCTTCCTGGCTAAA---GGAACTGTGCAGGTATTAAAAACCCACAGATCTTCAATCCAGGTTCGTGGCCTGGGGACTCCTTTTGGTTGCAAGGATTG-CGTGTGTGTGGAAACCC--GGAGAAAGGCCACACATGAAGTTAGCATGCCGAGTCACCAGTCACAAAGCCA-TTTCTCCTGATGCCCTCCCCTTGTTTCTATTCCCAGGCCTCATTATGTGTAATGTC------ATAGACACAC------ACATGCAGGAACATCCCATCACAGCCAGGACAGAAGCGCCAAGGGAGGTGCTTTGCACGAATTCCAT-CTTGGAGTTAGAAGCACTTGCTCGGTGCTTGCCAACTACAAATGGCCCCATGCTGGAAAATGATGCTAATTAGTATGCCATT-----------AAAAAGG------------------GGGGGGA-----CCACCACCCACAACAAAATG-GCCGTGTGCAGGCCTGAAGCCCTGCCCTGAGGACCACAGGGAAGCATGG-CCGCTAATGCAGCC-TAATTCACTTTGTTTGGCAGAGAGAGCAAGCTCGCCATGTTGCTGCGGGAGTCTCTGGGGAACATGAACTGCCGAACCACCATGATCGCGCACATCTCGGCCGCGGCCGGGAGCTACGCGGAGACCCTGTCCACCATCCAGATTGCATCGAGAGTCTTGAGGATGAAGAAAAAGAAGACGAAGGTCAGGAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17103558 1443 - 229590362 ATC-ACTGGTCATTTTGCTGGAAGGGAAGCCCTGGTATA-TTCTTACATTGCTCTGGAACTGAGCCTTAGTGAGCCCAGCGTCTCCAAACTCACACCTTAATTGGTCCCCGAT--GGGAAGGAAAAGCTATTGCTCTTACCCCACAGTCTTCCCTCCCTGAGGCCAGAAGCAGGTCAC----GTAAGATGGT----CTGC-------------TCTCTGCTGACAGTGGCCTGAGTCTCCCTCAGTGTCTGCTGAGCTGGATCGT---------CCTCTCCAGGG--AGCTTTGCAGGGGCTGGATGAT-------------GAGACATGGACGT-GGGACAAATTCCTCTCATCTGGCATCGCAGACACAGCATAGATACATGAGCACGCGGCATGGG-----AAATAGGCTTCCTCATCC-TTCAGGATCAG----GGAACGTGCCAGAGATGCAATGACATTTGGCAGCAGTTGAGAGAACGAGTGCTGATGATGAAATAAGCAGAGG-CCTT-TAAAGGCAGGGCAGGAAAAATGTTGGGACGAGTATAGGAATAGAAAAAC---AACCATTTTTCCAGGTCAGTTC---AAAGACTTAGCAACGCTCCCTGCAAACCCCAGGGCCTCATTATCACCACTCAG---------------------------------------------------------------------GGCAGTGGCCCCACACAGCACCTGCAGAGTCCCCAGAGGAAGCCTTTCCATAGG-AAGTGCTGC-TTTCTGTTGTGGA-TTGAGTGACTGGCTGGGCCTC--TCT-CTCTGTTTCTCCCCTGGTCTTCAGGAATAGGAATGCCTTTTCTTTCACTGCTCCTAGGTGCAAATATGCGAGTTAAGGGACAATGCCAATAAAGTGGCCGCAGCTTCCTGGCTAAA---GGAACTGTGCAGGTGTTAAAAACCCATAGATCTTCAATCCAGGGCCCTGGTAGGGAGACT-CTTTTTG-TGTGG-GATTG-TTTGTGTGTGGGAACCC-TGGAGAAAGGCCACACGTGCAGTTAGCATGCCGAGTCACCAGTCACAGAGCTG-TTTCTCCAGATCCCGTCCTCTCGTTTCTATTCCCAGGCCTCATTATGTGTAATGTC------ATAGACACAC------ACGCACAGGAACA-CCCATCACAGCCAGGACAGAAGCGCCAAGGGAGGTGCTTTGCATGAATCCCGT-CCTGGAGTTAGAAGCACTTGCTCAGTGCTTGCCAACTACAAATGGCCCCATGCTGGAAAACGATGCTAATTAGTATGCCATT-----------AAAAAG-------------------GGGGGGA-----CCACCACCCACAACAAAATG-GCCATGTGCAGGCCTGAAGCCCTGCCCTGAGGACCACAGGGAAGCATGG-CCGCTAATGCAGCC-TAATTCACTTTGTTTGGCAGAGAGAGCAAGCTCGCCATGTTGCTGCGGGAGTCTCTGGGGAACATGAACTGCCGTACCACCATGATCGCACACATCTCGGCCGCGGCCGGGAGCTACGCAGAGACCCTGTCCACCATCCAGATTGCATCGCGAGTCTTGAGGATGAAGAAAAAGAAGACGAAGGTAAGGAG i rheMac3.chr1 C 0 I 8 s macFas5.chr1 223867443 1441 - 227556264 ATC-ACTGGTCATTTTGCTGGAAGGGAAGCCCTGGTATA-TTCTTACATTGCTCTGGAACTGAGCCTTAGTGAGCCCAGCGTCTCCAAACTCACACCTTAATTGGTCCCCGAT--GGGAAGGAAAAGCTATTGCTCTTACCCCACAGTCTTCCCTCCCTGAGGCCAGAAGCAGGTCAC----GTAAGATGGT----CTGC-------------TGTCTGCTGACAGTGGCCTGAGTCTCCCTCAGTGTCTGCTGAGCTGGATCGT--------CCCTCTCCAGGG--AGCTTTGCAGGGGCTGGATGAT-------------GAGACATGGACGT-GGGACAAATTCCTCTCATCTGGCATCGCAGACACAGCATAGATATATGAGCACGCGGCATGGG-----AAATAGGCTTCCTCATCC-TTCAGGATCAG----GGAACGTGCCAGAGATGCAATGACATTTGGCAGCAGTTGAGAGAACGAGTGCTGATGATGAAATAAGCAGAGG-CCTT-TAAAGGCAAGGCAGGAAAAATGTTGGGACGAGTATAGGAATAGAAAAAC---AACCATTTTTCCAGGTCAGTTC---AAAGACTTAGCAACGCTCCCTGCAAACCCCAGGGCCTCATTATCACCACTCAG---------------------------------------------------------------------GGCAGTGGCCCCACACAGCACCTGCAGAGTCCCCAGAGGAAGCCTTTCCATAGG-AAGTGCTGC-TTTCTGTTGTGGA-TTGAGTGACTGGCTGGGC------CT-CTCTGTTTCTCCCCTGGTCTTCAGGAATAGGAATGCCTTTTCTTTCACTGCTCCTAGGTGCAGATATGCGAGTTAAGGGACAATGCCAATAAAGTGGCCGCAGCTTCCTGGCTAAA---GGAACTGTACAGGTGTTAAAAACCCATAGATCTTCAATCCAGGCCCCTGGTAGGGAGACTCCTTTTTG-TGTGG-GATTG-TTTGTGTGTGGGAACCC-TGGAGAAAGGCCACACGTGCAGTTAGCATGCCGAGTCACCAGTCACAGAGCTG-TTTCTCCAGATCCCGTCCTCTCGTTTCTATTCCCAGGCCTCATTATGTGTAATGTC------ATAGACACAC------ACGCACAGGAACA-CCCATCACAGCCAGGACAGAAGCGCCAAGGGAGGTGCTTTGCATGAATCCCGT-CCTGGAGTTAGAAGCACTTGCTCAGTGCTTGCCAACTACAAATGGCCCCATGCTGGAAAACGATGCTAATTAGTATGCCATT-----------AAAAAG-------------------GGGGGGA-----CCACCACCCACAACAAAATG-GCCATGTGCAGGCCTGAAGCCCTGCCCTGAGGACCACAGGGAAGCATGG-CCGCTAATGCAGCC-TAATTCACTTTGTTTGGCAGAGAGAGCAAGCTCGCCATGTTGCTGCGGGAGTCTCTGGGGAACATGAACTGCCGTACCACCATGATCGCACACATCTCGGCCGCGGCCGGGAGCTACGCAGAGACCTTGTCCACCATCCAGATTGCATCGCGAGTCTTGAGGATGAAGAAAAAGAAGACGAAGGTAAGGAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16912847 1446 - 220367699 ATC-ACTGGTCATTTTGCTGGAAGGGAAGCCCTGGTATA-TTCTTACATTGCTCTGGAACTGAGCCTTAGTGAGCCCAGCGTCTCCAAACTCACACCTTAATTGGTCCCCGAT--GGGAAGGAAAAGCTCTTGCTCTTACCCCACAGTCTTCCCTCCCTGAGGCCAGAAGCAGGTCAC----GTAAGATGGT----CTGC-------------TCTCTGCTGACAGTGGCCTGAGTCTCCCTCAGTGTCTGCTGAGCTGGATCGT--------CCCTCTCCAGGG--AGCTTTGCAGGGGCTGGATGAT-------------GAGACATGGACAT-GGGACAAATTCCTCTCATCTGGCATCGCAGACACAGCATAGAGATATGAGCACGCGGCATGGG-----AAATAGGCTTCCTCATCC-TTCAGGATCAG----GGAATGTGCCAGAGATGCAATGACATTTGGCAGCAGTTGAGAGAACAAGTGCTGACGATGAAATAAGCAGAGG-CCTT-TAAAGGCAAGGCAGGAAAAATGTTGGGACGAGTATAGGAATAGAAAAAC---AACCATTTCTCCAGGTCAGTTC---AAAGACTTAGCAACGCTCCCTGCAAACCCCAGGGCCTCATTATCACCACTCAG---------------------------------------------------------------------GGCAGTGGCCCCACACAGCACCTGCAGAGTCCCCAGAGGAAGCCTTTCCATAGGAAAGTGCTGC-TTTCTGTTGTGGA-TTGAGTGACTGGCTGggcctc--tct-ctctgtttctcccctGGTCTTCAGGAATAGGAATGCCTTTTCCTTCACTGCTCCTAGGTGCAAATATGCGAGTTAAGGGACAATGCCAATAAAGTGGCCGCAGCTTCCTGGCTAAA---GGAACTGTGCAGGTGTTAAAAACCCATAGATCTTCAATCCAGGCCCCTGGTAGGGAGACTCCTTTCTG-TGTGG-GATTG-TTTGTGTGTGGGAACCC-TGGAGAAAGGCCACACGTGCATTTAGCATGCCGAGTCACcagtcacagagctg-tttctccaGATCCCGTCCTCTCGTTTCTATTCCCAGGCCTCATTATGTGTAATGTC------ATAGACACAC------ACGCACAGGAACA-CCCATCACAGCCAGGACAGAAGCGCCAAGGGAGGTGCTTTGCATGAATCCCAT-CCTGGAGTTAGAAGCACTTGCTCAGTGCTTGCCAACTACAAATAGCCCCATGCTGGAAAACGATGCTAATTAGTATGCCATT-----------AAAAAg-------------------ggggggA-----CCACCACCCACAACAAAATG-GCCATGTGCAGGCCTGAAGCCCTGCCCTGAGGACCACAGGGAAGCATGG-CCGCTAATGCAGCC-TAATTCACTTTGTTTGGCAGAGAGAGCAAGCTCGCCATGTTGCTGCGGGAGTCTCTGGGGAACATGAACTGCCGTACCACCATGATCGCACACATCTCGGCCGCGGCCGGGAGCTACGCAGAGACCCTGTCCACCATCCAGATTGCATCCAGAGTGTTgaggatgaagaaaaagaagacgaAGGTAAGGAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82715227 1446 + 85787240 ATC-ACTGGTCATTTTTCTGGAAGGGAAGCCCTGGTATA-TTCTTACATTGCTCTGGAACTGAGACTTAGTGAGCCCAGCGTCTCCAAACTCACACCTTAATTGGTCCCCGAT--GGGAAGGAAAAGCTATTGCTCTTACCCCACAGTCTTCCCCCCCTGAGGCCAGAAGCAGGTCGC----GTAAGATGGT----CTGC-------------TCTCTGCTGACAGTGGCCTGAGTCTCCCTCAGTGTCTGCTGAGCTGGATCGT--------CCCTCTCCAGGG--AGCTTTGCAGGGGCTGGATGAT-------------GAGACATGGACAT-GGGACAAATTCCTCTCATCTGGCATCGCATACACAGCATAGAGACATGAGCACGTGGCATGGG-----AAACAGGCTTCCTCATCC-TTCAGGATCAG----GGAACATGCCGGAGATGCAATGACATTTGGCAGCAGTTGAGAGAACGAGTGCTGATGATGAAATAAGCAGAGG-CCTT-TAAAGGCAAGGCAGGAAAAATGTTGGGACGAGTATAGGAATAGAAAAAC---AGCCATTTCTCCAGGTCAGTTC---AAAGACTTAGCAACGCTCCCTGCAAACCCCAGGGCCTCATTATCACCACTCAG---------------------------------------------------------------------GGCAGTGGCCCCACAAAGCACCTGCAGAGTCCCCAGAGGAAGCCTTTCCATAGGAAAGTGCTGC-TTTCTGTTGTGGA-CTGAGTGACTGGCTGGGCCTC--TCT-CTCTATCTCTCCCCTGGTCTTCAGGAATAGGAATGCCTTTTCCTTCACTGCTCCTAGGTGCAAATATGCGAGTTAAGGGACAATGCCAATAAAGTGGCCGCAGCTTCCTGGCTAAA---GGAACTGTGCAGGTATTAAAAACCCATAGATCTTCAATCCAGGCTCCTGGTAGGGAGACTCCTTTTTG-TGTGG-GATTG-TTTGTGTGTGGGAACCC-TGGAGAAAGGCCACACGTGCAGTTAGCATGACGAGTCACCAGTCACAGAGCTG-TTTCTCCAGATCCCCTCCTCTCGTTTCTATTCCCAGGCCTCATTATGTGTAATGTC------ATCGACACAC------GCACACAGGAACA-CCCATCACAGCCAGGACAGAAGCGCCAAGGGAGGTGCTTTGCATGAATTCCAT-CTTGGAGTTAGAAGCACTTGCTCAGTGCTTGCCAACTACAAATAGCCCCATGCTGGAAAACGATGCTAATTAGTGTGCCATT-----------AAAAAG-------------------GGGGGGA-----CCACCACCCACAACAAAATG-TCCATGTGCAGGCCTGAAGCCCTGCCCTGAGGACCACAGGGAAGCATGG-CCGCTAATGCAGCC-TAATTCACTTTGTTTGGCAGAGAGAGCAAGCTCGCCATGCTGCTGCGGGAGTCTCTGGGGAACATGAACTGCCGTACCACCATGATCGCACACATCTCGGCCGCGGCCGGGAGCTACGCAGAGACCCTGTCCACCATCCAGATTGCATCGCGAGTCTTGAGGATGAAGAAAAAGAAGACGAAGGTAAGGAG i chlSab2.chr25 C 0 I 8 s calJac3.chr19 14429387 1408 - 49578535 ATC-ACTGGTCATTTTGCTTGAAGGGAAGCCCTGGGATA-TTCATAGATTGCTCTGGAACTGAACCATAGTGAGCTCAGTGTCTCCAAACACACACCTTAATGGGTCCCAAAT--GGGAAGGAAAAACTATTGCTCTTACACCACAGTCTTCCCTGCCCGAGGCCAGATGCAGGTCACGT--GTGAAATGGT----CTGC---------------TCTGCTGACAGTGGCCTGAGTCTCCCACACTGTATGCTGAGCCGGGTGAT---------CCTCTCCAGGG--AGCTCTGCAGGGGATGGATGAC-------------GAGACAGGAACATGGGGACAAATTCCTCTCCTCTGGCATTGCAGACACAGCCTAGAGATACGAG--TGTGGCACGAT-----ACATAGGCGACCTCAGCC-TTTA-GATCAG----GGAACACGCCAGAGATGCAGGGACATCCGGCAGCAGCTGAGAGTCCGAGTGCTGCTGGGGAGCTAAGCAGAGG-CCTT-TAAAAGCAAGGTGGGAAAAACGTTGGGACGAGTGTAGGAATAGAAAAGC---AGCCATTCCTCCAGGTCAGTTC---AAAGACCTAGAAACGCTCCCTGCAAACCCCTGGGCCTCGTGATCACCACTCAC-------------------------------------------------------------------------------------ATCCCTGGCAGAGTCCCCGGAGGAGGCCTTTCTAGAGG-AAG-GCTGC-TTTCTCTTGCCGG-TT--GTGACTGCTGGGGCCTC--TCT-CCGTGTTTCT-CCCTGATCTTCAGGACTGTAAATGCCTTTTCCTTCACTGCTCTTAGGTGCAAATATGTGAGTTAAAGGGCATTGCCCCTGAAGTAGCTGCAGCTTCCTGGCTGAA---GGAACTTTGCAGGTATTAGAAACACACAGGTCTTCAGTCCAAGTTCATGACAAGGGGACTACTTTTTGTGGCAAGGATCG-CCTGTGTGCAGAACTTC-CTGGAGCAGGCCACATGTGCCTGGAGCGCGCC-AGTCAC--ATCACAG-GCCA-CTTCTCCTGA-CCCCTCCTCTCGCTTCTATTCCCAGGCCTCATTATGTGTCATGTC------ACAGGCGCAC------ACGCACAGGCACC-CCCGTCAAAGCCAGGACGGTGGTGCCAGGGGACATGCTCGGCATGAATTCCAT-CTTGGAGTTAGAAGCACTTGCTCAGCGCTTGCCAACTACAAATAGCCCCGTGCTGGAAAATGATGCTGATTAGCATGCCATT-----------AAAAAG-------------------GGGGGG----------------CCACAAAATG-GCCGTGGACAGGCCTGAAGCCCTGCCCTGGCAGACGCAGGGAGACACGG-GCACTAATGCAGCC-TGATTCACTTTGTTTGGCAGAGAGAGCAAGCTCGCCATGCTGCTGCGGGAGTCTCTGGGGAACATGAACTGCCGCACCACCATGATCGCGCACATCTCGGCCGCAGCCGGGAACTACGCGGAGACCCTGTCCACCATCCAGATCGCGTCGAGAGTCTTGAGGATGAAGAAAAAGAAGACAAAGGTAAGGAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178912459 1399 + 195471971 ATCTCCTGATTCTTTT------------GCCCTGGTATA-TTTACAATTTGCTCTGAAACTGGAACACACT-AGCCCATCATTCCCAAATGAGCACCTTAATTGGTCCCAGGTAGGGGAAAAAAAAAAAA--------AACCCACCATCTTTCTTCCCCGAAGCCAGACATAAGTCACATGAGAAAAAAAA-------AA-------------TCTCTGCTGGCAGTGACCAGGATCTCACATGAAGTCTGTTGAGCT-GATGGT--------CCCTCTCCAGGG--GATTCTGTAGGGACTTGGACTT-------------GAGA--AGGACAT------------------TCTGAGATTG-AAACACATCATCTGAACATGAA-ATGTAGC-----------CAGAGGTTCTCCCAGCC--TCAGGT--------GGGGTGCTCCAGGGAGGA---GACATATTTCACCCAGCAGGTGCCTGCATGGGGAGAATTCGAGGAGCAGAAC-CCTTAAAAAAACATGGCAGG-ATCTCATTAGAGCAAGGACAGAACAAGGACTAT--GAGCCATTCCTTCAGGTCAATTCTCAAAGAGCCTAGAAACCAT--CAGAGGTGCCCTGGGCCTTATTATCACTAACCAG---------------------------------------------------------------------GATAGTGGTTCCACATAGCAACTGCAAAGTTCCCAGGGGTAGCCTTTC--TGGA-AAGTTCTGC-TTCCTGTTG-----CTAAGTGACTATTTGGG----------CCGTGTCTTT-CTCTGCTTATCAGTAATACCAACGTCTTTTCCTTCAGTGTTACAGGCTGCA-ATGGCAGGGTTGAGAGACAATGGCAGTAGCAT-------GCCTCTGTGCTATAAGGGGGATTTCCCATGTGTTGTAAACACGTGGGACTTCAGTGCAGGTTCACAGCATGCTGTCTCTAT-----TACAGGGATTGCCCTGTGTGCAGAAACTCGCTGAGAAGGGCTATGTGTGCAGATAGCATGCCAGATTGCTGGTCACAAAGCCATTTTCTTCTGATCCCCTCTCCTTGTTTCTATTCCCAGGCCTCATTATGTGCTATGTC------ATATGCACACAAACAGATACACTAGAATAGCCCATCGCGGCCAGGACAGAAGTGCCAAGGGAGGTG-TTTGCATGAATCCCATCCTTGGAGTTAGAAGCACTTGCTCAGC---TGCCAACTGCAAATAGCCCCATGCTGCAAAGCAATGCTAATTAGTATGCCATT-----------aaaaaaaaaaaaaaaaaaaaaagaggaagaaa-----aCACCACCCACAACCAAATA-GCCACATGCAAACCTGAAGTCCTGCCCTGACAGCCAGCATGAGGCATGGCCCACTAATGCAGCCTTAATCCACTTTGTTTGGCAGGGAGAGCAAGCTCACCATGCTTCTGAGGGAGTCTCTGGGGAATGTGAACTGTCGCACCACCATGATCGCACACATCTCGGCCGCAGCCAGCAGCTACGCGGAGACCCTGTCCACCATCCAGATCGCGTCGAGAGTCTTAAGGATGAAGAAGAAGAAGACCAAGGTAAGGG- i mm10.chr1 C 0 I 3 s canFam3.chr7 36502087 1488 + 80974532 ACC-ACTGACTGTTTTGCTTGAAGGGAAACCCTGATGTGTTTTTTAAACTGCCCTGG-ACTCAGCCACAGTGAACCCCATGTC-CTGATCTGACACCCTAATTGGTTCCAGGT--GGAAAGGCAAA-TGATGGTTCGTATACCATGGCCTTGCTCCCTGAAGGCCAGATGTAGGTCACGT--GTGAAATGGTTCCCCTGCTTTTAAGGCCTCGTCTCCACTGACAGCAGCCTTCCTCTCACACCGGCTCTGCCGAACTGGACAGCACCCCCCCCCCCCCCCCGCACCAGCTCTGCAGGGG-TGGCTGGCGGACAGCCCGGCGGGGACAGGGATGTGAGGGCTGGCCCTCTGCACCTGGCATCACAAACATGATACAGAGCTAAGTACACGGGGCCTGGGGAAACACAGAGCCTGCCTCTGCC-CTTGGGATCAGGGAAGGAAGGCTCTGGAGCCGAAATAACATCTGACAGCGGCTGAGGGGATGAGAGCTGATGATGACGTAAGCAGAAGACTTT-TAAGAGCAAGGCAGGGAGAAGGTTAGGACAAGAGTAGGAATGGAAAAACATGAGCCACTGCTCCAGATCAGTTTTTGAAGAGCCTGGAAACACCATCTCTGAACTCCCAGGCCTC---ATCACCACTCAG---------------------------------------------------------------------GGCCCTGGCCCCACACAGTACCTGCAAAGTCCCCAGAGGAGCACTTTC--TAGA-AAGTTCTGAGTTCCTGCTGAGTACTTGGGCCTATGTCTGCACCCCCGTCC-CCCCCACCCCGCGCTTGTAATCAGGAAATGAAACAGCTTCTCCTCCATTCCTGCTGTGTGCAAATACAAGAG-TAAGAGACAATGGTAACAAAGCTCTTGCAACTTCGTG--CAAA---------CCGCATATGTTACAAACACACAGATCTTCCATACGAGTTTGTGGCTGGTAGGCTGCTTTCCCTTGCAGGGACCC-CTGGCATGTGGACACCTGCAGAGAAGAGC---------------CATGCC-------------CAGAGCCG-CTCTATCCTGCTCCTTCCTCTCACTTCTATCCCCAGGTCCCATCAGGGGCAGTGTCCTGTGTGCGGACACAG------ATGCACAGGATTA-CCTCTGACCG-CAGGACAGCAGTGCCAAGGGAGGTGTTTTGCATGGAGTCCATCCCTGGGGTTAGAAGCACTTGCTCAGC---TGCCAACTACAAATAGCCCCATGCTAGAAAATGATGCTCATTAGTATGCCATTTTTTTTTTTAAAAAAAG-------------------GGAAAAAAATCGCCACTGCCCCCAACAAAAAGAGTCACGTAGAGGCCTGAAGTCCTACCCTGACAGTCAAAGTGAAGCATGGCCCACTAATGCAGCCTTAATTCACTTTGCGTGGCAGAGAGAGCAAGCTGACCATGCTGCTGCGGGAGTCCCTGGGGAACATGAACTGCCGGACCACCATGATCGCGCACATCTCGGCCGCCGCTGGCAACTACGCTGAAACCCTGTCCACCATCCAGATCGCCTCAAGGGTCTTGAGGATGAAGAAAAAGAAAACAAAGGTAAGGCG i canFam3.chr7 I 340 C 0 a score=-12278.000000 s hg38.chr1_KI270759v1_alt 382428 12 + 425601 -CTCGCGGGGTG----G s panTro4.chr1 225140758 12 + 228333871 -CTCGCGGGGTG----G i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226511363 11 - 229942017 -CTCGCGGGGT-----G i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140401705 16 - 143122389 -CTCGCGGGGGGAGGTG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223868884 8 - 227556264 --TCACAGCG------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16914293 8 - 220367699 --TCACAGCG------- i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14430795 10 - 49578535 -CTCGAAGTGG------ i calJac3.chr19 C 0 C 0 s mm10.chr1 178913861 9 + 195471971 -TTAATGGGA------- i mm10.chr1 I 3 C 0 s canFam3.chr7 36503575 10 + 80974532 CTCCCCGGGG------- i canFam3.chr7 C 0 C 0 e rheMac3.chr1 17105001 8 - 229590362 I e chlSab2.chr25 82716673 8 + 85787240 I a score=11809446.000000 s hg38.chr1_KI270759v1_alt 382440 2967 + 425601 GGGGGTGGTGGA---TGAGGGAGC-CTTTGGAGCCGTGCCCTGGAACAGAGTCAGAAAAAGCCAAATCAACGTTGCCAATCCCCCAGCATCAGGA-----GATGTGACTTG------GAGCTGACAACACGTGGCT----CAGGGTCCACTTTGGGGCAGGGAAACCTTGGGGC----TGATACAAAGTCATGTCACCTCCCCACACCTGGTGCTGGCCCTGGTCACCCAGCCTGGACCCCTGACCGGAAGCACTTGGTCCGCTTTAGAG--AGTACAAATGG---ATTGCTACCTCAAGAGGAAAAACGTTGGAGGGATGGAAAATA--TTGTTTTTCTCATGCATGGCCTCGGTCCTGCGTAGGTGGAGACTGTGTCCTTCGAAGGCTTGGCACCAAAGAGG-----------TTCTCAACTCCCTGCTCTCAGGGCC--CCTCCCCTGCTGCATGTCCAGGAGTCACTCCCTGGCTGCT-GCTTTTGTCCTGGCAA---------TTCAGTGGTTTCTGGATGA-TACT--GAGTCTGCTGGACATCGCTGGGCTCATTTTCTCAGGCAGAGGCCAAGCCAGGATGGTGGCAGGGTGGCA--AGTAGTTG--AGAAAACCATCATGATCGTGGCCACTCAGTGGCAGGGGCAGCTGCTG----AGGTGGGGGCCTTTTT--CCCCCTTCTCTGTTTTGTACCTTTTTTATCTTTAAATAG----CGTTTCTTAACCAGAGTTCCACGGCACAGGGTGCCAAACATTGGTGAGCCAGCAGCCCTTAGCTGGTCAGGCAGGGCCTGGA-T-GGTCACCCCCTTTCCTGAGCAG---CTGTTTCCCCAGCGTGCCACACGGGGCTTCCCCTTCACAAATGCAGTGGTGATGTG--ACACC-GGGCGCGCGGGCATGGCACCCC--GAG---TG---GCCCACGTGCGGGAGGCCAACGGGGGTGGCT-------------GTCAGTAGCCTGTGTC--GTCAGGGGCCTTCACCACTTGCCGCGCACAGCTGGGCTCCC----GGGGAAACTGCCACGGAAAGGCCA-CCACATTAACTG--C---CGTCTCACTCA-----CAGTACACATCCAGCTCGTCCGGCGGGGAGAGCTCCTGCGAAGAAGGCCGCATGCGCAGGCCCACCCAGCTGAGACCCTTCCACACCAGGGCCACGGTGGACCCTGACTTCCCCATCGCTCACCTGTCCAGCGACCCCGACTACTCCTCCAGCAGCGAGCAGTCCTGCGACACCGTCATCTACATCGGGCCCAACGGCACGGCCCTCTCTGACAAGGAGCTCACCGACAACGAGGGCCCCCCAGACTTTGTCCCTATCGTGCCAGCCCTGCAGAAGACCCGGGGCGACAGCCGGCCCGCAGAGGCAGGAGAGGCTGCAGCCGGCAAGTCAGAAAGGGACTGCCTGAAGTGCAACACGTTTGCCGAGCTGCAGGAGAGGCTGGACTGCATCGACGGCAGCGAGGAGCCCAGCAGCTTTCCTTTCGAAGAACTGCCTGCTCAGTTTGGGCCAGAGCAGGCAAGCAGAGGCCCCCGGTTAAGCCAAGCAGCGGGGGCAAGCCCACTCTCTGAGTCTGATAAGGAAGATAATGGGTC---CGAAGGTCAGCTGACCAACAGAGAAGGCCCTGAACTCCCAGCCTCCAAGATGCAGAGGAGTCACTCACCTGT------GCCCGCCGCGGCACCCGCCCACAGCCCCAGCCCGGCCTCACCCAGGAGCGTCCCGGGCAGCAGTAGCCAGCACAGCGCCTCCCCACTCGTGCAGAGCCCCAGCCTCCAGAGCAGCCGGGAGAGCCTCAACTCCTGCGGCTTCGTGGAAGGCAAGCCCAGGCCCATGGGCTCCCCCCGGCTGGGCATCGCCAGCCTGTCCAAGACCTCGGAGTACAAGCCACCCAGCTCTCC-TTCCCAGAGATGCAAAGTCTACACCCAGAAGGGGGTCCTGCCGTCTCCCGCCCCACTGCCTCCCTCGAGCAAGGATTCCGGCGTGGCGTCTAGGGAGTCCTTGCTGCAGCCCGAGGTGCGTACGCCCCCGGTTGGAATGAGCCCCCAG-----------GTTTTGAAAAAATCCATGTCTGCTGGGAGCGAAGGGTTCCCGGAAACTCCTGTCGATGATGAGCAGCAGGCAGCTACTCCTTCAGAGTCCAAGAAGGAGATCCTGAGCACCACGATGGTGACGGTGCAGCAGCCACTGGAGCTGAACGGTGAGGACGAGCTGGTGTTCACGCTGGTGGAGGAGCTGACCATCAGCGGGGTCCTGGACAGCGGCCGCCCCACCAGCATCATCAGCTTCAACAGCGACTGCTCTGCACGGGCCCTGGCCTCGGGCTCGCGGCCCGTCAGCATCATCAGCAGCATCAGCGAGGACCTGGAGTGCTACTCCAGCACGGCCCCCGTCTCCGAGGTCAGCATCACACAGTTCTTGCCCCTCCCGAAGATGAGCCTGGATGAGAAGGCCCAGGACGCAGGGAGCAGACGCTCTTCCATCAGCTCCTGGCTGAGCGAGATGAGCGCGGGCAGTGAGGGTGAGCAGTCGTGCCACAGTTTCATAGCCCAGACGTGTTTTGGGCACGGGGAGGCAATGGCAGAACCTGTGGCCTCGGAGTTTGTCAGCAGCCTCCAGAACACCGCTGTGGTGTGCAGAGAGAAGCCCAAGGCCAGCCCCGACAACTTGCTCATCCTGTCTGAGATGGGAGATGACTCTTTCAACAAAGCAGCCCCCATCAAAGGCTGCAAAATATCCACAGTGAGCAAGGCCATGGTCACCATCTCCAACACGGCCAATCTGAGCAGCTGCGAGGGGTACATCCCCATGAAGACCAATATCACAGTTTACCCCTGCATTGCCATGAGCCCCCGGAACATCCAAGAGCCGGAGGCCCCCACCG---CCACCCCCAAAGCAGGCCCCACATTAGCCCAGTCCCGGGAGAGTAAGGAAA---ACAGTGCAAAGAAAGAGATGAAATTTGAGGACCCGTGGCTGAAACGAGAAGAGGAAGTGAAAAAAGAGACGGCTCATCCCAATGAAGAAGGGATGATGAGGTGTGAGACTGCCA s panTro4.chr1 225140770 2972 + 228333871 GGGGGGGGGGGGGGGTGAGGGAGC-CTTTGGAGCCGTGCCCTGGAACAGAGTCAGAAAAAGCTAAATCAACGTTGCCAATCCCCCAGCATCAGGA-----GATGTGACTTG------GAGCTGACAACACGTGGCT----CAGGGTCCACTTTGGGGCAGGGAAACCTTGGGGC----TGATACAAAGTCATGTCACCTCCCCACACCTGGTGCTGGCCCTGGTCACCCAGCCTGGACTCCTGACCGGAAGCACTTGGTCCGCTTTAGAG--AGTATAAATGG---ATTGCTACCTCAAGAGGAAGAACGTTGGAGGGATGGAAAATA--TTGTTTTTCTCATGCATGGCCTTGGTCCTGTGTAGGTGGAGACTGTGTCCTTCGGGGGCTTGGCGCCAAAGAGG-----------TTCTCAACTCCCTGCTCTCAGGGCC--CCTCCACTGCTGCATGTCCAGGAGTCACTCCCTGGCTGCG-GCTTTTGTCCTGGCAA---------TTCAGTGGTTTCTGGATGA-TACT--GAGTCTGCTGGACATCGCTGGGCTCATTTTCTCAGGCAGAGGCCAAGCCAGGATGGTGGCAGGGTGGCA--AGTATTTG--AGAAAACCATCATGATCGTGGCCACTCAGTGGCAGGGGCAGCTTCTG----AGGTGGGGGCCTTTTTTCCCCCCTTCTCTGTTTTGTACCTTTTTTATCTTTAAATAG----CATTTCTTAGCCAGTGTTCGGCGGCACAGGGTGCCAAACATTGGTGAGCCAGCAGCCCTTAGCTGGTCAGGCAGGGCCTGGA-T-GGTCACCTCCTTTCCTGAGCAG---CTGTTTCCCCAGCGTGCCACACGGGGCTTCCCCTTCACAAATGCAGTGGTGATGTG--ACACC-GGGCACGCGGGCATGGCACCCC--GAG---TG---GCCCACGTGCAGGAGGCCAACGGGGGTGGCT-------------GTCAGTAGCCTGTGTC--GTCAGGGGCCTTCACCACTTGCCGCGCACAGCTGGGCTCCC----GGGGAAACTGCCACGGAAAGGCCA-CCACGTTAACTG--C---TGTCTCACTCA-----CAGTACACATCCAGCTCGTCCGGCGGGGAGAGCTCCTGCGAAGAAGGCCGCATGCGCAGGCCCACCCAGCTGAGACCCTTCCACACCAGGACCACGGTGGACCCTGACTTCCCCATCGCTCACCTGTCCAGCGACCCCGACTACTCCTCCAGCAGCGAGCAGTCCTGCGACACCGTCATCTACATCGGGCCCAACGGCACGGCCCTCTCTGACAAGGAGCTCACCGACAACGAGGGCCCCCCAGACTTTGTCCCTATCGTGCCGGCCCTGCAGAAGACCCGGGGCGACAGCCGGCCCACAGAGGCAGGAGAGGCTGCAGCCAGCAAGTCAGAAAGGGACTGCCTGAAGTGCAACACGTTTGCCGAGCTGCAGGAGAGGCTGGACTGCATCGACGGCAGCGAGGAGCCCAGCAGCTTTCCTTTCGAAGAACTGCCTGCTCAGTTCGGGCCAGAGCAGGCAAGCAGAGGCCCCCGGTTAAGCCAAGCAGCGGGGGCAAGCCCACTCTCTGAGTCTGATAAGGAAGATAATGGGTC---CGAAGGTCAGCTGACCAACAGAGAAGGCCCTGAACTCCCAGCCTCCAAGATGCAGAGGAGTCACTCACCTGT------GCCCGCCGCGGCACCCGCCCATAGCCCCAGCCCGGCCTCACCCAGGAGCGTCCCGGGCAGCAGTAGCCAGCACAGCGCCTCCCCACTCGTGCAGAGCCCCAGCCTCCAGAGCAGCCGGGAGAGCCTCAACTCCTGCGGCTTCGTGGAAGGGAAGCCCAGGCCCATGGGCTCCCCCCGGCTGGGCATCGCCAGCCTGTCCAAGACCTCGGAGTACAAGCCACCCAGCTCTCC-TTCCCAGAGATGCAAAGTCTACACCCAGAAGGGGGTCCTGCCGTCTCCCGCCCCACTGCCTCCCTCGAGCAAGGATTCCAGTGTGGCGTCTAGTGAGTCCTTGCTGCAGCCCGAGGTGCGTACGCCCCCGGTTGGAATGAGCCCCCAG-----------GTTTTGAAAAAATCCATGTCTGCTGGGAGCGAAGGGTTCCCGGAAACTCCTGTCGATGATGAGCAGCAGGCAGCTACTCCTTCAGAGTCCAAGAAGGAGATCCTGAGCACCACGATGGTGACGGTGCAGCAGCCACTGGAGCTGAACGGTGAGGACGAGCTGGTGTTCACGCTGGTGGAGGAGCTGACCATCAGCGGGGTCCTGGACAGCGGCCGCCCCACCAGCATCATCAGCTTCAACAGCGACTGCTCTGTGCAGGCCCTGGCCTCGGGCTCGCGGCCCGTCAGCATCATCAGCAGCATCAGCGAGGACCTGGAGTGCTACTCCAGCATGGCCCCCGTCTCCGAGGTCAGCATCACACAGTTCTTGCCCCTCCCGAAGATGAGCCTGGATGAGAAGGCCCAGGACGCAGGGAGCAGACGCTCTTCCATCAGCTCCTGGCTGAGCGAGATGAGCGTGGGCAGTGAGGGTGAGCAGTCGTGCCACAGTTTCATAGCCCAGACGTGTTTTGGGCACGGGGAGGCAATGGCAGAACCTGTGGCCTCGGAGTTTGTCAGCAGCCTCCAGAACACCGCTGTGGTGTGCAGAGAGAAGCCCAAGGCCAGCCCCGACAACTTGCTCATCCTGTCTGAGATGGGAGATGACTCTTTCAACAAAGCAGCCCCCATAAAAGGCTGCAAAATATCCACAGTGAGCAAGGCCATGGTCACCATCTCCAACACGGCCAATCTGAGCAGCTGCGAGGGGTACATCCCCATGAAGACCAATATCACAGTTTACCCCTGCATTGCCATGAGCCCCCGGAACATCCAAGAGTCCGAGGCCCCCACTG---CCACCCCCAAAGCAGGCCCCACATTAGCCCAGTCCCGGGAGAGTAAGGAAA---ACAGTGCAAAGAAAGAGATGAAATTTGAGGACCCCTGGCTGAAACGAGAAGAGGAAGTGAAAAAAGAGACTGCTCATCCCAATGAAGGAGGGACGATGAGGTGTGTGACTGCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226511374 2908 - 229942017 GGGGGTGGCAGA---TGAGGGAGC-CTTTGGAGCCATGCCCTGGAACGGAGTCAGAAAAAGCCAAATCAACATTGCCAATCCCCCAGCATCGGGA-----GATGTGACTTG------GAGCTGACAACACGTGGCT----CAGGGTCCACTCTGGGGCAGGGAAACCTTGGGGC----TGATACAAAGTCATGTCACCTCCCCACACCTGGTGCTGGCCCTGGTCACCCAGCCTGGACCCCTGACCGGAAGCACTTGGTCCGCTTTAGAG--AGTATAAATGG---ATTGCTACCTCAAGAGGAAAAACGCTGGAGGGATGGAAGATA--TTGTTTTTCTCATGCACTGCCTTGGTCCTGTGTAGATGGAGACTGTGTCCTTCAAGGGGTTGGCGCCAAAGAGGA----------TTCTCAACT-CCTGCTCTCAGGGCC--CCTCCTTTGCTGCATGTCCAGGAGTCACTCCCTGGCTGCT-GCTTTTGTCCCGGCAATTCAGTGGTTTCAGTGGTTTCTGGATGC-TACT--GAGTCTGCTAGACATCGCTGGGCTCATTTTCTCAGGCAGAGGCCAAGCCAGGATGGTGGCAGGGTGGCA--AGTATTTG--AGAAAAGCGTCATGATCGTAGCCACTCAGTGGCAGGGGCAGCTGCTG----ATGTGGGGCCTTTTTT--TTCCCTTCTCTGTTTTGTACCTTTTTTATCTTTAAATAG----TGTTTCCTAACCAGTGTTCCACGGCACAGGGTGCTAAACATTGGTGACCCAGCAGCCCTTAGCTGGTCAGGCAGGGCCTGGA-T-GGTCACCTCCTTTCCCGAGCAGCTTCTGTTTCTCCAGTGTGCCACACGGGGCTTCCCCTTCACAAATGCAGCAGTGATGTG--AGACC-AGGCACGCGGGCATGGCACC-----------------------GCGGGAGGCCGACCGGGGTGACC-------------ATCAGTACCCTGTGTCCAGTCAGGGGCCTCCACCACTTGCCGCACACAGCTGGGCTCCT----GGGGAAACTGCCACGGAAGGGCCG-CCACATTAACTG--C---TCTCTCACTCA-----CAGTCCACATCCAGCTCCTCCGGCGGGGAGAGCTCCTGCGAAGAAGGCCGTATGCGCAGGCCCACCCAGCTGAGACCCTTCCACACCAGGGCCACGGTGGACCCCGATTTCCCCATCACTCACCTGTCCAGCGACCCCGACTACTCCTCTAGCAGCGAGCAGTCCTGCGACACTGTCATCTACATCGGGCCCAACGGCACGGCCCTCTCTGACAAGGAGCTCACCGACAACGAGGGCCCCCCAGACTTTGTCCCTATCGTGCCAGCCCTGCAGAAGACCCGGGGTGACAGCCGGCCCGCAGAGGCAGGAGAGGCTGCAGCCAGCAAGTCAGAAAGGGACTGCCTGAAGTGCAACACGTTCGCCGAGCTGCAGGAGAGGCTGGACTGCATCGACGGCAGCGAGGAGCCCAGCAGGTTTCCTTTCGAAGAACTGCCTGCTCAGTTCGGGCCGGAGCAGGCAAGCAGAGGCCCCCGGTTAAGCCAAGCAGCGGGGGCAAGCCCACTCTCTGAGTCTGATAAGGAAGATAATGGGTC---CGAAGGTCAGCTTACTGACAGAGAAGGCCCTGAACTGCCAGCCTCCAAGACGCAGAGGAGTCACTCACCTGT------GCCCGCCACGGCACCCGTCCATAGCCCCAGCCCGGCCTCACCCAGGAGCATCCCGGGCAGCAGTAGCCAGCACAGCGCCTCCCCACTTGTGCAGAGCCCCAGCCTCCAGAGCAGCCGGGAGAGCCTCAACTCCTGCGGCTTCGTGGAAGGCAAGCCCAGGCCCATGGGCTCCCCCCGGCTGGGCATCGCCAGCCTGTCCAAGACCTCGGAGTACAAGCCACCCAGCTCTCC-TTCCCAGAGATGCAAAGTCTACACCCAGAAGGGGGTCCTGCCGTCTCCCGCCCCACTGCCTCCCTCGAGTTAAGAAT-----------------------------------------------------------------TCCCGGCNNNNNNNNNNGTTTTGAAAAAATCCATGTCTGCTGGGAGCG-AGGCTTCCCGGAAACTCCTGTCGATGATGAGCAGCAGGCAGCTACTCCTTCAGAGTCCAAGAAGGAGATCCTGAGCACCACGATGGTGACGGTGCAGCAGCCGCTGGAGCTGAATGGTGAGGACGAGCTGGTGTTCACGCTGGTGGAGGAGCTGACCATCAGCGGGGTCCTGGACAGCGGCCGCCCCACCAGCATCATCAGCTTCAACAGCGACTGCTCTGTGCAGGCCCTGGCCTCGGGCTCGCGGCCCGTCAGCATCATCAGCAGCATCAGCGAGGACCTGGAGTGCTACTCCAGCATGGCCCCCGTCTCCGAGGTCAGCATCACACAGTTTTTGCCCCTCCCGAAGATGAGCCTGGATGAGAAGGCCCAGGAGGCAGGGAGCAGACGCTCTTCCATCAGCTCCTGGCTGAGCGAGATGAGCGCCGGCAGTGAGGGCGAGCAGTCGTGCCACAGTTTCATAGCCCAGACGTGTTTTGGGCACGGGGAGGCAATGGCAGAACCTGTGGCCTCGGATTTTGTCAGTAGCCTCCAGAACACCGCTGTGGTGTGCAGAGAGAAGCCCAAGGCCAGCCCCGACGACTTGCTCATCCTGTCTGAGATGGGAGATGACTCTTTCAACAAAGCAACCCCCATCAAAGGCTGCAAAATATCCACACTGAGCAAGGCCATGGTCACCATCTCCAACACGGCGAATCTGAGCAGCTGCGAGGGGTACATCCCCATGAAGACCAATATCACGGTTTACCCCTGCATTGCCATGAGCCCCCGGAACATCCAAGAGCCCGAGGCCCCCACTG---CCACCCCCAAAGCAGGCTCCACATTAGCCCAGTCCCAGGAGAGTAAGGAAA---ACAGTGCAAAGAAAGAGATGAAATTTGAGGACCCCTGGCTGAAACGAGAAGAGGAAGTGAAAAAAGAGAATGCTCATCCCAGTGAAGAAGG---GATGAGGTGTGAGACTGCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140401721 2967 - 143122389 GGGTGTGGTGGA---TGAGGGAGC-CTTTGGAGCCGTGCCCTGGAACAGAGTCAGAAAAAGCCAAATCAACGTTGCCAATCCCCCAGCATCAGGA-----GATGCGACTTG------GAGCTGACAACACGTGGCT----CAGGGTCCACTCTGGGGCAGGGAAACCTTGGGGC----TGATACAAAGTCAGGTCACCTCCCGACACCTGGTGCTGGCCCTGGTCACCCAGCCTGGACCCCTGAGCGGAAGCACTTGGTCCGCTTTAGGG--AGTATAAATGG---ATTGCTGCCTCAAGAGGAAAAATGCTGGAGGGATGGAAAATA--CTGTTTTTCTCATGCACAGCCTTGGTCCTGTGTAGTTGGAGACTGTGTCCTTCAAGGGGTTGGCGCCAAACAGG-----------TTCCCCACT-CCTGCTGTCAGGGCC--CCTCCCCTGCTGCACGTCCGGGAGTGACTCCCTGGCTGCT-GCTTTTGTCCTGGCAA---------TTCAGTGGCTTCTGGATGC-CACT--GAGTCTGCTAGACATCGCTGGGCTCATTTTCTCAGGCAGAGGCCAAGCCAGGATGGTGGCAGGGTGGCA--AGTATTTG--AGAATACCATCATGATCGTGGCCACTCAGTGGCAGGGGCAGCTGCTG----AGGTGGGGGCCTTTTTT-TTCCCTTCTCCGTTTCGTACCTTTTTTATCTTTAAATAG----TGTTTCCTAACTACTGTTCCACGGCACAGAGTGCCAAACGTTGGTGACCCAGCAGCCCTTAGCTGGTCAGGCAGGGCCTAGA-T-GGTCACCTCCTTCCCTGAGCGGCTTCTGTCTCCCCAGTGTGCCACACGGGGCTTCCCCTTCACACATGCAGTGGTGATGTG--AGACC-GGGCACGCTGGCATGGCACCCC--GAG---TG---GCCCACGTGCGGGAGGCCGACCGGGGTGGCT-------------GTCAGTAGCCTGTGTC--GTCAGGGGCCTCCTCCACTTGCCGCACACAGCTGGGCTCCC----GGGGAAACTGCCACGGAAGGGCTG-CCACATTAACTG--C---TCTCTCACTCA-----CAGTACACATCCAGCTCCTCCGGCGGGGAGAGCTCCTGCGAAGAAGGCCGCATGCGCAGGCCCACCCAGCTGAGACCCTTCCACACCAGGGCCACGGTGGACCCCGACTTCCCCATCGCTCACCTGTCCAGCGACCCCGACTACTCCTCCAGCAGCGAGCAGTCCTGCGACACCGTCATCTACATCGGGCCCAACGGCACGGCCCTCTCCGACAAGGAGCTCACCGACAACGAGGGCCCCCCAGACTTCGTCCCTATCGTGCCAGCCCTGCAGAAGACCCGGGGCGACAGCCGGCCAGCAGAGGCAGGAGAGGCTGCAGCCAGCAAGTCAGAAAGGGACTGCCTGAAGTGCAACACGTTCGCCGAGCTGCAGGAGAGGCTGGACTGCATCGACGGCAGCGAGGAGCCCAGCAGCTTTCCTTTCGAAGAACTGCCTGCTCAGTTTGGGCCAGAGCAGGCGAGCAGAGGCCCCCGGTTAAGCCAAGCAGCCAGGGCAAGCCCACTCTCTGAGTCTGATAAGGAAGATAATGGGTC---CGAAGGTCAGCTGACCGACAGAGAAGGCCCTGAACTCCCAGCCTCCAAGATGCAGAGGACTCACTCACCTGT------GCCCGCCGCGGCACCCGCCCATAGCCCCAGCCCAGCCTCACCCAGGAGCATCCCGGGCAGCAGTAGCCAGCACAGCACCTCCCCACTCGTGCAGAGCCCCAGCCTCCAGAGCAGCCGGGAGAGCCTCAACTCCTGCGGCTTCATGGAAGGCAAGCCCAGGCCCATGGGCTCCCCCCGGCTGGGCATCGCCAGCCTGTCCAAGACCTCGGAGTACAAGCCACCCAGCTCTCCTTTCCCAGAGATGCAAAGTCTACACCCAGAAGGGGGTCCTGCCGTCT-CTGCCCCACTGCCTCCCTCGAGCAAGGATTCCGGCGTGACCTCTAGCGAGGCCTTGCTGCAGCCCGAGGTGCGTACGCCCCCGGTTGGAATGAGCCCCCAG-----------GTTTTGAAAAAGTCCATGTCTGCTGGGAGCGAAGGGTTCCTAGAAACTCCTGTCGATGATGAGCAGCAGGCAGCTACTCCTTCAGAGTCCAAGAAGGAGATCCTGAGCACCACGATGGTGACGGTGCAGCAGCCGCTGGAGCTGAACGGCGAGGACGAGCTGGTGTTCACGCTGGTGGAGGAGCTGGCCATCAGCGGGCTCCTGGACAGCGGCCGCCCCACCAGCATCATCAGCTTCAACAGCGACTGCTCTGTGCAGGCCCTGGCCCCAGGCTCGCGGCCCGTCAGCATCATCAGCAGCATCAGCGAGGACCTGGACTGCTACTCCAGCATGGCCCCCGTCTCCGAGGTCAGCATCACACAGTTCTTGCCCCTCCCGAAGATGAGCCTGGATGAGAAGGCCCAGGAGGCAGGGAGCAGACGCTCTTCCATCAGCTCCTGGCTGAGCGAGATGAGCGCGGGCAGTGAGGGCGAGCAGTCGTGCCACAGTTTCATAGCCCAGACGTGTTTTGGGCACGGAGAGGCAATGGCAGAACCTGTGGCCTCGGAGTTTGTCAGCGGCCTCCAGAACACCGCTGTGGTGTGCAGAGAGAAGCCCAAGGCCAGCCCCGACAACTTGCTCATCCTCTCTGAGATGGGAGATGACTCTTTCAACAAAGCAGCCCCCATCAAAGGCTGCAACATATCCACACTGAGCAAGGCCATGGTCACCATCTCCAACACGGCGAATCTGAGCAGCTGCGAGGGGTACATCCCCATGAAGACCAATATCACGGTTTACCCCTACATTGCCATGAGCCCCCGGAACATCCAAGAGTCCGAGGCCCCCACTG---CCACCCCCAAAGCAGGCCCCACATTAGCCCAGTCCCAGGAGAGTAGGGAAA---ACAGTGCAAAGAAAGAGATGAAATTTGAGGACCCCTGGCTGAAACGAGAAGAGGAAGTGAAAAAAGAGAATGCTCGTCCCAACGAAGAAGG---GATGAGGTGTGAGACTGCCA i nomLeu3.chr5 C 0 M 1394 s rheMac3.chr1 17105009 2969 - 229590362 GGGTGTGGTGGA---TGAGGGAGT-CTTTGGAGCTGTGCCCTGGAACGGAGTCAGAAAAAGCCAAATCAATGTTGCCAATCCCTCAGCATCAGGA-----GATGCGACTTG------GAGCTGACAGCACGTGGCT----CAGGGTCCACTTTGGGGCAGGGAAACCTTGGGGC----TGATACAAAGTCATGTCCCCTCCCCACACCTGGTGCTGGCCCCGGTCACCCAGCCTGGACCCCTGACCGGAAGCACTTGGTCCGCTTT-TAG--ATTATAAATGG---ATTGCTACCTCAAGAGGAAAAACACTGGAGGGATGGAAAATA--CTGTGTTTCTCATGCACTGCCTTGGTCCTGTGTAGATGGAGACTGTGTCCCTCACGGGGTTGGCGCCAGAGTA------------TTCTCAGCTCCCTGCTCTCAGGGCC--TCTCCCCTGCTGCATGTCCAGGAGTCATTCCCTGGCTGCT-GCTTTTGTCCTGGCAG----------TCAGTGGTTCCTGGATGA-TACC--GAGTCTGCTAGAAATCACTGGGCTCATTTTCTCAGGCAGAGGCCAAGCCAGGACAGTGGCAGGGTGACC--AGTATTTG--AGGAAACTGTCGTGATCGCGGCCACTCAGTGACAGGGGCAGCTGCTG----ATGTGGGGGCCTTTTTT-TCTCCTTCTCCGTTTTGTACCTTTTTTATCTTTAAATag----tgcttcctaaccagtgttccatggcacagggtgccaaacactggtgacccagcagcccttagctggtgaggcggggcctgga-t-ggtcacctcctttcctgagcagcttctgcttccccagtgtgccacacaGGGCTTCCCCTTCCCAAATGCAACGGTGATGTG--AGACT-GGGCACGCTGGCATGGCACCCCCTGAG---TG---GCCCACATGTGGGAGGTCAACCAGGGTGGCC-------------GTCAGTAGCCCGCGTCCGGTCAGGGGCCTCCACCACCTGCCACACACAGCTGGGCTCCC----GGGGAAACTGCCATGACAGGGTCG-CCACGTTAACTG--C---TCTCTCTCTCA-----CAGTACACATCCAGCTCCTCCGGCGGGGAGAGCTCCTGTGAAGAAGGCCGCATGCGCAGGCCCACCCAGCTGAGACCCTTCCACACCAGGGCCACGGTGGACCCCGACTTCCCCATCGCTCACCTGTCCAGCGACCCCGACTACTCCTCCAGCAGCGAGCAGTCCTGCGACACCGTCATCTACATCGGGCCCAACGGCACGGCCCTCTCTGACAAGGAGCTCACCGACAACGAGGGCCCCCCAGACTTTGTCCCTATTGTGCCAGCCCTGCAGAAGACCCGGGGCGACAGCCGGCCTGCAGAGGGAGGAGAGCCTGCAGCCGGCAAGTCAGAAAGGGACTGCCTGAAGTGCAACACGTTCGCTGAGCTGCAGGAGAGGCTGGACTGCATCGACGGCAGCGAGGAGCCCAGCAGGTTTTCTTTTGAAGAAGTGCCTGCTCAGTGTGGGCCAGAGCAGGCAAGCAGAGGCCCCCCGTTAAGCCAAGCAGCTGGGGCAAGCCCACTCTCTGAGTCTGATAAGGAAGACAATGGGTC---CGAAGGTCAGCGGACCGACAGAGAAGGCCCAGAAATCCCAGCCTCCAAGATGCAGAGGAGTCACTCACCTGT------GCCCACCGCAGCACCCGCCCATAGCCCCAGCCCGGCCTCGCCCAGGAGCATCCCAGGCAGCAGCAGCCAGCAGAGCGCCTCTCCGCTCGTGCAGAGCCGCAGCCTCCAGAGCAGCCGGGAGAGCCTGAACTCCTGCGGCTTCGTGGAAGGCAAGCCCAGGCCCATGGGCTCCCCCAGGCTGGGCATCGCCAGCCTGTCCAAGACCTCGGAGTACAAGCCACCCGGCTCTCC-TTCCCAGAGATGCAAAGTCTACACCCAGAAGGGGGTCCTACCATCTCCCGCCCCGCTGCCTTCCTCGGGCAAGGATTCTGGCGTGGCGTCTAGTGAGTCCTTGCTGCAGCCCGAGGTGCGTACGCCCCCGGTTGGAATGAGCCCCCAG-----------GTTTTGAAAAAATCCATGTCTGCTGGGAGCGAAGGGTTCCCGGAAACTCCTGTCGATGATGAGCAGCAGGCAGCTACTCCTCCAGAGTCCGAGAAGGAGATCCTGAGCACCACGATGGTGACGGTGCAGCAGCCGCTGGAGCTGAACGGTGAGGATGAGCTGGTGTTCACGCTGGTGGAGGAGCTGACCATCAGCGGGGTCCTGGACAGCGGCCGCCCCGCCAGCATCATCAGCTTCAACAGCGACTGCTCTGTGCAGGCCCTGGCCTCGGGCTCGCGGCCCGTCAGCATCATCAGCAGCATCAGCGAGGACCTAGAGTGCTACTCCGGCATGGCCCCCGTCTCCGAGGTCAGCATCACACAGTTCTTGCCCCTCCCGAAGATGAGCCTGGAGGAGAAGGCCCAGGAGGCAGGGAGCAGACGCTCTTCCATCAGCTCCTGGCTGAGCGAGATGAGTGCGGGCAGTGAGGGGGAGCAGTCGTGCCACAGTTTCATAGCCCAGACGTGTTTTGGGCACGGGGAGGCAATGGCAGAACCCGCGTCCTCGGAGTTCGTCAGCGGCATCCAGAACAGCGCTGTGGTGTGCAGAGAGAGGCCCAAGGCCAGCCCCGACAACTTGCTCATCCCATCTGAGATGGGAGATGACTCTTTCAACAAAGCAACCCTCATCAAAGGCTGCAAAATATCCACCCTGGGCAAGGCCATGGTCACCATCTCCAACACGGCCAATCTGAGCAGCTGTGAGGGGTACATCCCCATGAAGACCAACATCACGGTTTACCCCTGCATTGCCGTGAGTCCCCGGAACGTCCAAGAGCCCGAGGCCCCCACTG---CCACCCCCAAAGCAGGCCCCATATTAGCCCAGTCCCAGGAGAGTAAGGAAA---ACAGTAGCAAGAAAGAGATGACATTTGAGGACCCCTGGCTGAAAAGAGAAGAGGAAGTAAAAAAAGAGAATGCTCATCCCAGCGAAGAAGG---GATTAGGTGTGAGACTGCCA i rheMac3.chr1 I 8 C 0 s macFas5.chr1 223868892 2967 - 227556264 GGGTGTGGTGGA---TGAGGGAGT-CTTTGGAGCTGTGCCCTGGAACGGAGTCAGAAAAAGCCAAATCAATGTTGCCAATCCCTCAGCATCAGGA-----GATGCGACTTG------GAGCTGACAGCACGTGGCT----CAGGGTCCACTTTGGGGCAGGGAAACCTTGGGGC----TGATACAAAGTCATGTCCCCTCCCCACACCTGGTGCTGGCCCCGGTCACCCAGCCTGGACCCCTGACCAGAAGCACTTGGTCCACTTT-TAG--ATTATAAATGG---ATTGCTACCTCAAGAGGAAAAACACTGGAGGGATGGAAAATA--CTGTGTTTCTCATGCACTGCCTTGGTCCTGTGTAGATGGAGACTGTGTCCCTCATGGGGTTGGCGCCAGAGTA------------TTCTCAGCTCCCTGCTCTCAGGGCC--TCTCCCCTGCTGCATGTCCAGGAGTCATTCCCTGGCTGCT-GCTTTTGTCCTGGCAG----------TCAGTGGTTCCTGGATGA-TACC--GAGTCTGCTAGAAATCACTGGGCTCATTTTCTCAGGCGGAGGCCAAGCCAGGACAGTGGCAGGGTGACC--AGTATTTG--AGGAAACTGTCGTGATCGCGGCCACTCAGTGGCAGGGGCAGCTGCTG----ATGTGGGGGCCTTTTTT-TCTCCTTCTCCGTTTTGTACCTTTTTTATCTTTAAATAG----TGCTTCCTAACCAGTGTTCCATGGCACAGGGTGCCAAACACTGGTGACCCAGCAGCCCTTAGCTGGTGAGGCGGGGCCTGGA-T-GGTCACCTCCTTTCCTGAGCAGCTTCTGCTTCCCCAGTGTGCCACACAGGGCTTCCCCTTCCCAAATGCAGCGGTGATGTG--AGACT-GGGCACGCTGGCATGGCACCCCCTGAG---TG---GCCCACATGTGGGAGGTCAACCAGGGTGGCC-------------GTCAGTAGCCCGCGTCCAGTCAGGGGCCTCCACCACCTGCCACACACAGCTGGGCTCCC----GGGGAAACTGCCATGACAGGGTCG-CCACGTTAACTG-------CTCTCTCTCA-----CAGTACACATCCAGCTCCTCCGGCGGGGAGAGCTCCTGTGAAGAAGGCCGCATGCGCAGGCCCACCCAGCTGAGACCCTTCCACACCAGGGCCACGGTGGACCCCGACTTCCCCATCGCTCACCTGTCCAGCGACCCCGACTACTCCTCCAGCAGCGAGCAGTCCTGCGACACCGTCATCTACATCGGGCCCAACGGCACGGCCCTCTCTGACAAGGAGCTCACCGACAACGAGGGCCCCCCAGACTTTGTCCCTATTGTGCCAGCCCTGCAGAAGACCCGGGGCGACAGCCGGCCTGCAGAGGGAGGAGAGCCTGCAGCCGGCAAGTCAGAAAGGGACTGCCTGAAGTGCAACACGTTCGCTGAGCTGCAGGAGAGGCTGGACTGCATCGACGGCAGCGAGGAGCCCAGCAGGTTTTCTTTTGAAGAAGTGCCTGCTCAGTGTGGGCCAGAGCAGGCAAGCAGAGGCCCCCCGTTAAGCCAAGCAGCTGGGGCAAGCCCACTCTCTGAGTCTGATAAGGAAGATAATGGGTC---CGAAGGTCAGCGGACCGACAGAGAAGGCCCAGAAATCCCAGCCTCCAAGATGCAGAGGAGTCACTCACCTGT------GCCCACCGCAGCACCCGCCCATAGCCCCAGCCCGGCCTCGCCCAGGAGCATCCCAGGCAGCAGCAGCCAGCAGAGCGCCTCTCCGCTCGTGCAGAGCCGCAGCCTCCAGAGCAGCCGGGAGAGCCTGAACTCCTGCGGCTTCGTGGAAGGCAAGCCCAGGCCCATGGGCTCCCCCAGGCTGGGCATCGCCAGCCTGTCCAAGACCTCGGAGTACAAGCCACCCGGCTCTCC-TTCCCAGAGATGCAAAGTCTACACCCAGAAGGGGGTCCTACCATCTCCCGCCCCGCTGCCTTCCTCGGGCAAGGATTCTGGCGTGGCGTCTAGTGAGTCCTTGCTGCAGCCCGAGGTGCGTACGCCCCCGGTTGGAATGAGCCCCCAG-----------GTTTTGAAAAAATCCATGTCTGCTGGGAGCGAAGGGTTCCCGGAAACTCCTGTCGATGATGAGCAGCAGGCAGCTACTCCTCCAGAGTCCGAGAAGGAGATCCTGAGCACCACGATGGTGACGGTGCAGCAGCCGCTGGAGCTAAACGGTGAGGATGAGCTGGTGTTCACGCTGGTGGAGGAGCTGACCATCAGCGGGGTCCTGGACAGCGGCCGCCCCGCCAGCATCATCAGCTTCAACAGCGACTGCTCTGTGCAGGCCCTGGCCTCGGGCTCGCGGCCCGTCAGCATCATCAGCAGCATCAGCGAGGACCTAGAGTGCTACTCCGGCATGGCCCCCGTCTCCGAGGTCAGCATCACACAGTTCTTGCCCCTCCCGAAGATGAGCCTGGAGGAGAAGGCCCAGGAGGCAGGGAGCAGACGCTCTTCCATCAGCTCCTGGCTGAGCGAGATGAGTGCGGGCAGTGAGGGGGAGCAGTCGTGCCACAGTTTCATAGCCCAGACATGTTTTGGGCACGGGGAGGCAATGGCAGAACCCGCGTCCTCGGAGTTCGTCAGCGGCATCCAGAACAGCGCTGTGGTGTGCAGAGAGAGGCCCAAGGCCAGCCCCGACAACTTGCTCATCCCATCTGAGATGGGAGATGACTCTTTCAACAAAGCAACCCTCATCAAAGGCTGCAAAATATCCACCCTGGGCAAGGCCATGGTCACCATCTCCAACACGGCCAATCTGAGCAGCTGTGAGGGGTACATCCCCATGAAGACCAACATCACGGTTTACCCCTGCATTGCCGTGAGTCCCCGGAACGTCCAAGAGCCCGAGGCCCCCACTG---CCACCCCCAAAGCAGGCCCCATATTAGCCCAGTCCCAGGAGAGTAAGGAAA---ACAGTAGCAAGAAAGAGATGACATTTGAGGACCCCTGGCTGAAAAGAGAAGAGGAAGTAAAAAAAGAGAATGCTCATCCCAGCGAAGAAGG---GATTAGGTGTGAGACTGCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16914301 2972 - 220367699 GAGTGTGGTGGA---TGAGGGAGT-CTTTGGAGCTGTGCCCTGGAACGGAGTCAGAAAAAGCCAAATCAATGTTGCCAATCCCTCAGCATCAGGA-----GATGCGACTTG------GAGCTGACAGCACGTGGCT----CAGGGTCCACTTTGGGGCAGGGAAACCTTGGGGC----TGATACAAAGTCATGTCCCCTCCCCACACCTGGTGCTGGCCCCGGTCACCCAGCCTGGACCCCTGACCGGAAGCACTTGGTCCACTTCAGAG--ATTATAAATGG---ATTGCTACCTCAAGAGGAAAAACACTGGGGGGATGGAAAATA--CTGTGTTTCTCATGCACTGCCTTGGTCCTGTGTAGATGGAGACTGTGTCCCTCACGGGGTTGGCGCCAGAGTA------------TTCTCAGCTCCCTGCTCTCAGGGCC--TCTCCCCTGCTGCATGTCCAGGAGTCATTCCCTGGCTGCT-GCTTTTGTCCCGGCAG----------TCAGTGGTTCCTGGATGA-TACC--GAGTCTGCTAGAAATCACTGGGCTCATTTTCTCAGGCGGAGGCCAAGCCAGGACAGTGGCAGGGTGACC--AGTATTTG--AGGAAACTGTCGTGATCGCGGCCACCCAGTGGCAGGGGCAGCTGCTG----ATGTGGGggcctttttt-tctccttctccgtTTTGTaccttttttatctttaaatag----tGCTTCCTAACCAGTGTTCCATGGCACAGGGTGCCAAACACTGGTGACCCAGCAGCCCTTAGCTGGTGAGGCGGGGCCTGGA-T-GGTCACCTCCTTTCCTGAGCAGCTTCTGCTTCCCCAGTGTGCCACACAGGGCTTCCCCTTCCCAAATGCAGCGGTGATGTG--AGACT-GGGCACGCTGGCATGGCACCCCCTGAG---TG---GCCCACATGTGGGAGGTCAACCAGGGTGGCC-------------GTCAGTAGCCCGCGTCCAGTCAGGGGCCTCCACCACTTGCCACACACAGCTGGGCTCCC----GGGGAAACTGCCATGACAGGGTCG-CCACGTtaactgctc---tctctctctca-----cagtaCACATCCAGCTCCTCCGGCGGGGAGAGCTCCTGTGAAGAAGGCCGCATGCGCAGGCCCACCCAGCTGAGACCCTTCCACACCAGGGCCACGGTGGACCCCGACTTCCCCATCGCTCACCTGTCCAGTGACCCCGACTACTCCTCCAGCAGTGAGCAGTCCTGTGACACCGTCATCTACATCGGGCCCAACGGCACGGCCCTCTCTGACAAGGAGCTCACCGACAACGAGGGCCCCCCAGACTTTGTCCCTATTGTGCCAGCCCTGCAGAAGACCCGGGGCGACAGCCGGCCTGCAGAGGGAGGAGAGCCTGCAGCCAGCAAGTCAGAAAGGGACTGCCTGAAGTGCAACACGTTCGCTGAGCTGCAGGAGAGGCTGGACTGCATCGACGGCAGCGAGGAGCCCAGCAGGTTTTCTTTTGAAGAACTGCCTGCTCAGTGTGGGCCAGAGCAGGCAAGCAGAGGCCCCCCGTTAAGCCGAGCAGCTGGGGCAAGCCCACTCTCTGAGTCTGATAAGGAAGATAATGGGTC---CGAAGGTCAGCGGACCGACAGAGAAGGCCCAGAAATCCCGGCCTCCAAGATGCAGAGGAGTCACTCACCTGT------GCCCACCACAGCACCCGCCCATAGCCCCAGCTGGGCCTCGCCCAGGAGCATCCcaggcagcagcagccagcagagcgcctctccgctcgtgcagagccgcagcctccagagcagccGGGAGAGCCTGAACTCCTGCGGCTTCGTGGAAGGCAAGCCCAGGCCCATGGGCTCCCCCAGGCTGGGCATCGCCAGCCTGTCCAAGACCTCGGAGTACAAGCCACCCGGCTCTCC-TTCCCAGAGATGCAAAGTCTACACCCAGAAGGGGGTCCTACCATCTCCCGCCCCGCTGCCTTCCTCGGGCAAGGATTCTGGCGTGGCGTCTAGTGAGTCCTTGCTGCAGCCCGAGGTGCGTACGCCCCCGGTTGGAATGAGCCCCCAG-----------GTTTTGAAAAAATCCATGTCTGCTGGGAGCGAAGGGTTCCCGGAAACTCCTGTCGATGATGAGCAGCAGGCAGCTACTCCTCCAGAGTCCAAGAAGGAGATCCTGAGCACCACGATGGTGACGGTGCAGCAGCCGCTGGAGCTGAACGGTGAGGACGAGCTGGTGTTCACGCTGGTGGAGGAGCTGACCATCAGCGGGGTCCTGGACAGCGGCCGCCCCGCCAGCATCATCAGCTTCAACAGTGACTGCTCTGTGCAGGCCCTGGCCTCCGGCTCGCGGCCCGTCAGCATCATCAGCAGCATCAGCGAGGACCTGGAGTGCTACTCCGGCATGGCCCCCGTCTCCGAGGTCAGCATCACACAGTTCTTGCCCCTCCCgaagatgagcctggaggagaaggcccaggaggcagggagcaGACGCTCTTCCATCAGCTCCTGGCTGAGCGAGATGAGTGCGGGCAGTGAGGGGGAGCAGTCGTGCCACAGTTTCATAGCCCAGACGTGTTTTGGGCACGGGGAGGCAATGGCAGAACCCACGTCCTCGGAGTTCGTCAGCGGCATCCAGAACACCGCTGTGGTGTGCAGAGAGAGGCCCAAGGCCAGCCCCGACAACTTGCTCATCCCGTCTGAGACGGGAGATGACTCTTTCAACAAAGCAACCCTCATCAAAGGCTGCAAAATATCCACCCTGGGCAAGGCCATGGTCACCATCTCCAACACGGCGAATCTGAGCAGCTGCGAGGGGTACATCCCCATGAAGACCAACATCACGGTTTACCCCTGCATTGCCGTGAGTCCCCGGAACGTTCAAGAGCCCGAGGCCCCCACTG---CCACCCCCAAAGCAGGCCCCACATTAGCCCAGTCCCAGGAGAGTAAGGAAA---ACAGTAGCAAGAAAGAGATGACATTTGAGGACCCCTGGCTGAAACGAGAAGAGGAAGTGAAAAAAGAGAATGCTCATCCCAGCGAAGAAGG---GATTAGGTGTGAGACTGCCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82716681 2969 + 85787240 GGGTGTGGTGGA---TGAGGGAGT-CTTTGGAGCCGCGCCCTGGAACGGAGTCAGAAAAAGCCAAATCAATGTTGCCAATCCCTCAGCATCAGGA-----GATGCGACTTG------GAGCTGACAGCACGTGGCT----CGGGGTCCACTTTGGGGCAGGGAAACCTTGGGGC----TGATACAAAGTCATGTCCCCTCCCCACACCTGGTGCTGGCCCCGGTCACCCAGCCTGGACCCCTGACCAGAAGCACTTGGTCCGCTTT-TAG--ATTATAAATGG---ATTGCTACCTCAAGAGGAAAAACACTGGAGGGATGGAAAATA--TTGTGTTTCTCATGCACTGCCTTGGTCCTGTGTAGATGGAGACTGTGTCCCTCACGGGGTTGGTGCCAGAGTA------------TTCTCAGCTCCCTGCTCTCAGGGCC--CCTCCCCTGCTGCATGGCCAGGAGTCGTTCCCTGGCTGCT-GCTTTTGTCCTGGCAG----------TCAGTGGCTCCTGGATGA-TACC--GAGTCTGCTAGAAATCACTGGGCTCATTTTCTCAGGCGGAGGCCAAGCCAGGACAGTGGCAGGGTGGCC--AGTATTTG--AGGAAACTGTCGTGAGCGCGGCCACTCAGTGGCAGGGGCAGCTGCTG----ACGTGGGGGCCTGTTTT-TCTCCTTCTCCGTTTTGTACCTTTTTTATCTTTAAATAG----TGCTTCCTAACCAGTGTTCCATGGCACAGGGTGCCGAACACTGGTGACCCAGCAGCCCTTAGCTGGTGAGGCGGGGCCTGGA-T-GGTCACCTTCTTTCCTGAGCAGCTTCTGCTTCCCCAGCGTGCCACACAGGGCTTCCCCTTCCCAAATGCAGCGGTGATGTG--AGACT-GGGCACACTGGCATGGCACCCCCTGAG---TG---GCCCACATGTCGGAGGTCAACCAGGGTGGCC-------------GTCAGTGGCCCGCGTCCAGTCAGGGGCCTCCACCACCTGCCGCACACAGCTGGGCTCCC----GGGGAAACTGCCATGACAGGGTCG-CCACATTAACTG--C---TCTCTCTCTCA-----CAGTACACATCCAGCTCCTCCGGCGGGGAGAGCTCCTGTGAAGAAGGCCGCATGCGCCGGCCCACCCAGCTGAGACCCTTCCACACCAGGGCCACGGTGGACCCCGACTTCCCCATCGCTCACCTGTCCAGCGACCCCGACTACTCCTCCAGCAGCGAGCAGTCCTGCGACACCGTCATCTACATTGGGCCCAATGGCACGGCCCTCTCTGACAAGGAGCTCACCGACAACGAGGGCCCCCCAGACTTTGTCCCTATTGTGCCAGCCCTGCAGAAGACCCGGGGCGACAGCCGGCCTGCAGAGGGAGGAGAGCCTGCAGCCAGCAAGTCAGAAAGGGACTGCCTGAAGTGCAACACGTTCGCTGAGCTGCAGGAGAGGCTGGACTGCATCGACGGCAGCGAGGAGCCCAGCAGGTTTTCTTTTGAAGAACTGCCTGCTCAGTGTGGGCCAGAGCAGGCAAGCAGAGGCCCCCCGTTAAGCCAAGCAGCTGGGGCAAGCCCACTCTCTGAGTCTGATAAGGAAGATAATGGGTC---CGAAGGTGAGCGGACCGACAGAGAAGGCCCAGAAATCCCGGCCTCCAAGATGCAGAGGAGTCACTCACCTGT------GCCCACCGCAGCACCCGCCCATAGCCCCAGCCCGGCCTCGCCCAGGAGCGTCCCAGGCAGCAGCAGCCAGCAGAGCGCCTCTCCGCTCGTGCAGAGCCGCAGCCTCCAGAGCAGCCGGGAGAGCCTGAACTCCTGCGGCTTCGCGGAAGGCAAGCCCAGGCCCATGGGCTCCCCCAGGCTGGGCATCGCCAGCCTGTCCAAGACCTCGGAGTACAAGCCACCCGGCTCTCC-TTCCCAGAGATGCAAAGTCTACACCCAGAAGGGGGTCCTACCATCTCCCACCCCGCTGCCTTCCTCGGGCAAGGATTCTGGCGTGGCGTCTAGTGAGTCCTTGCTGCAGCCCGAGGTGCGTACGCCCCCGGTTGGAATGAGCCCCCAG-----------GTTTTGAAAAAATCCATGTCTGCTGGGAGCGAAGGGTTCCCGGAAACGCCTGTCGATGATGAGCAGCAGGCAGCTACTCCTCCAGAGTCCAATAAGGAGATCCTGAGCACCACGATGGTGACGGTGCAGCAGCCGCTGGAGCTGAACGGTGAGGACGAGCTGGTGTTCACGCTGGTGGAGGAGCTGACCATCAGCGGGGTCCTGGACAGCGGCCGCCCCGCCAGCATCATCAGCTTCAACAGCGACTGCTCTGTGCAGGCCCTGGCCTCGGGCTCGCGGCCCGTCAGCATCATCAGCAGCATCAGCGAGGACCTGGAGTGCTACTCTGGCATGGCCCCCGTCTCCGAGGTCAGCATCACACAGTTCTTGCCCCTCCCGAAGATGAGCCTGGATGAGAAGGCCCAGGAGGCAGGGAGCAGACGCTCTTCCATCAGCTCCTGGCTGAGCGAGATGAGTGCGGGCAGTGAGGGGGAGCAGTCGTGCCACAGTTTCATAGCCCAGACGTGTTTTGGGCACGGGGAGGCAATGGCAGAACCCGCGTCCTCGGAGTTCGTCAGCAGCATCCAGAACACCGCTGTGGTGTGCAGAGAGAGGCCCAAGGCCAGCCCCGACAACTTGCTCATCCCGTCTGAGATGGGAGATGACTCTTTCAACAAAGCAACCCTCATCAAAGGCTGCAAAATATCCACCCTGGGCAAGGCCATGGTCACCATCTCCAACACGGCGAATCTGAGCAGCTGCGAGGGGTACATCCCCATGAAGACCAACATCACGGTTTACCCCTGCATTGCCGTGAGTCCCCGGAACGTCCAAGAGCCCGAGGCCCCCACTG---CCACCCCCAAAGCAGGCCCCACATTAGCCCAGTCCCAGGAGAGTAAGGAAA---ACAGTAGCAAGAAAGAGATGACATTTGGAGACCCCTGGCTGAAACGAGAAGAGGAAGTAAAAGAAGAGAATGCTCATCCCAGCAAAGAAGG---GATTAGGTGTGAAACTGCCA i chlSab2.chr25 I 8 C 0 s calJac3.chr19 14430805 2951 - 49578535 -GGTGGGGTGGG---TGAGAGAGC-CTTTGGAGCCTTGCCCCAGGGCTCCGTCAGAAGCAGCCAAGTCAACGCTGCCAGGCCCTCAGCATCAGGA--------------------------------CACGTGGTT----CGGTGTCCACCCTGGGGCAGGGAAACCTTTGGGC----TGATGGAAAGTCATGTCCACTCCCCACACCTGGTGCTGGCCCTGGTCACCCAGCCTAGACCCCTGAGTGGAAGTACTCAGTCCACTGA-GAG--AGTATAAATGG---ATTGCGACTTTGAGATGAGACATGTGGGAGGGATGGGAAATCTTCTGTCTTTCTCATGCACTGCCTCGGTCCTCTGAAGATGGAGACTGTGTCCTTCAAGGGACTGGCTCCAAAGACGA----------CCCCGAACTCCCTGCTCACAGGGCCCTCCTCCTCCTCTGCATGTCTGGGAGCCTCCGCCTGGCTGCT-GGTGTTGTCCTGGTCA---------TTCAGTGGTTTCTGGATGATTAGT--GAGTCTGCTAGAAATCCTGGGGCTCATTTTCTCAGGCAGAAGCAAAGCTAGGACGGTGGTGGTGTGGCA--AATGTTGG--AGGAAACCATCATGATCGTGTCCACTCAGAGGCGGGGGCCGCTGCTGACGTATGTGTGGGCCTTTTT--TTCCCTTCCACGTTTTGTACCTTTTTTATTTTTCCATAG----TGCTTCCTAACCAGTGTTCCACGGTACAGGCTGCCAGAAGTTGGTGACCCTGAAGCCCTTAGTGGATCAGGCAGGGCCTGGA-G-GGTCACCTCCTTTTCCAAGCAGCCTCTGTTTCCCCA---TGCCCTGCAGGGATTCTCCTTCACTAATGCAGTGGTGATGTG--AGACT-GGGCGCACTGGCGTGGCAACCC--GAG---TG---GCCCATATGCA-GAGGCCAACCAGGGTGGCC-------------ATCAGTAGCCTGTGTCC-GTCCGGGCCCTCCACCACTTGCCACACAAAGCTGGGTTCCC----AGGGAAACTGCTTTGGAAGAGTCG-CCACATTAACAG--C---TCTCTCACTCA-----CAGTACACGTCCAGCTCCTCTGGGGGCGAGAGCTCCTGTGAAGAAGGCCGCATGCGCAGGCCCACCCAGCTGAGACCCTTCCACACCAGGGCCACAGGGGACCCGGACTTCCCCATCGCCCACCTGTCCAGCGACCCCGACTACTCCTCCAGCAGCGAGCAGTCCTGCGACACTGTCATCTACATCGGGCCCAATGGCACAGCCCTGTCGGACAAGGAGCTCACTGACAATGAGGGCCCCCCCGACTTTGTCCCTATTGTGCCAGCCCTGCAGAAGACCCGGGGTGACAGCCGGCCTGCAGAGGCAGGAGAGGCTGCGGCCAGCAAGTCAGAAAGGGACTGCCTGAAGTGCAACACATTTGCCGAGCTACAGGAGAGGCTGGACTGCATCGACGGCAGCGAGGAGCCCAGCAAGTTTCCTTTCGAAGAACTGCCTGCTCAGTTTGTGGCAGAGTTGGCCAGCAGAGCCCTGCCGTTAAGCCAAGCAGCTGGGGCAAGCCCACTCTCTGAGTCTGATAGGGAAGATAATGGGTC---CGAAGGTCAGCTGACTGACAGAGAAGGCCCTGAAAATCTGGCCTCCAAGATGCAGAGGAGTCACTCACCAGT------GCCCGCCTCAGCACCCACCCATAGCCCCAGCCCAGCCTCGCCCAGGAGCATCCCGGGCAGCAGCAGCCAGCACAGCACCTCCCCACTCGTGCAGAGCCCCAGCCTGCAGAGCAGCCGGGAGAGCCTGAACTCCTGCAGCTTCATGGAAGGCAAGCCCAGGCCCATGGGCTCCCCACGGCTGGGCATTGCCAGCCTGTCCAAGACCTCAGAGTACAAGCCACCCAGCTCTCC-TTCCCAGAGGTGCAAAGTCTACACCCAGAAGGGGGTCCTGCCATCTCCCGCCCCCCTGCCTCCGTCAAGCAAGGATTCTGGCATGGTGTATAGTGAGTCCTTGCTGCAGCCCGAGGTGCGTACACCCCCGGTCGGAATGAGTCCCCAG-----------GTTTTGAAAAAGTCCATGTCTGCTGGAAGCGAAGGGTTCCCAGAAACTCCCGTGAATGATGAGCCTCAAGCAGTGACTCCTCCAGATTCCAAGAAGGAGACCCTGAGCACCACGATGGTGACTGTGCAGCAGCCGCTGGAGCTGAACGGTGAGGATGAGCTGGTGTTCACGCTGGTGGAGGAGCTGACCATCAGCGGGGTCCTGGACAGCGGCCGCCCCACCAGCATCATCAGCTTCAACAGCGACTGCTCCGTGCAGGCCCTGGCCTCAGGCTCGCGGCCCGTCAGCATCATCAGCAGCATCAGCGAGGACCTGGAGTGCTACTCCAGCATGGCCCCGGTCTCTGAGGTCAGCATCACACAGTTCTTGCCCCTCCCAAAGATGAGCCTGGATGAGAAGGCCCAGGAGGCAGGGAGCAGACGCTCTTCCATCAGCTCCTGGCTGAGCGAGATGAGCGTGGGCAGTGAAGGCGAGCAGTCGTGCCACAGTTTCATAGCCCAGACGTGTTTTGGGCACGGGGAGGCAATGGCGGAACCCGCAGCCTCGGAGTTTGTCAGCAGCATCCAGAACACGGCTGTGGTGTGCAGAGAGAAGCCCAAGGCCGGCCCCGACAACTTGCTTATCCTGTCTGAGATGGGGGGTGACTCCTTGAACAAAGCAACCCCCATCAAAGGCTGCAAAATATCCACCCTGGGCAAGGCCATGGTCACCATCTCCAACACGGCGAATCTCAGCAGCTGCGAGGGGTACATCCCCATGAAGACCAATATCACTGTTTACCCCTGCCTTGCCATGAGCCCCCGGAGCATCCAAGAGCCCGAGGCTGCCACTG---CCACCCCCAAAGCAGGTCCCACATCAGCCCAGTCCCAGGAGAGTAAGGAAA---GCAGTGCAAAGAAAGAAATGAAGTTTGAGGACCCCTGGCTGAAACGAGAAGTGGAAGTAAAAAAAGAGAATGCTCATCCCAATGAAGATGA---GACTATGTGTGAGAGCGCCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178913870 2869 + 195471971 ----------------GGGAGAATACACTGGGGACA------AGAGCCAAATCACAAAGAGCCAA-TCAGTCTCGCCATTCTCTGAACACCAAGG-----ACTGTG-------------------CAAACGTGGCTGCTGCAGCCCCTGTCTCAGAACAGGAAAGCCTTCCAACAACACGGGAGAAAGTTGAGTGTCCTTTTCATGGTTGATGCTGTCACGGGTCACCCACCCT-GACCGCTGACAGAGA---------CCACTTT------------AGTAG---ATTGCCGCTATAAGATGAAAAATGTCCCAGGGGTGGGAAGGA----------ATCAGGCTCCTCCACGGTC--ACAGAGGTGAGGTGTGCAGCCAGCAA---TCTGGCTCCAGAAAGGATGGCTAATACCTCACCCCTCCCCGC-CATGCGGTT--CTGCCACCCCTGCATGCCCAGGAGCCTGCAGCCGGTGGGT-TCTTGTG-------------------TCAGTGTCCTTGTGTCTG-CATT--GTGTTGGC-AGATGTCAGTAGGCTGACTTCCTTGGGCAGAAGCAAAGCCAGGGTCGCAGTCAAATGGCATCAGTGTTTG--AGAAAATCA-CATTTCTGAGCCAACTCAAT---------------------ACTTGAGACTTCCCTTT-CTTCCTCCTTTGTAT-ACGCCTTTTATGTATATAAAAAGGCAAGGCTTCATGACCAGTGTTCTGAGGCAGGGG--------------------AATAGTCTTGAGGAAGTCAGGTGGGATCTGGA-TAGGTCGCTACCTTTCCCAAGCAGA--CTGATACATTAGTGTGCAA-ATGGGAATTATCATACCCA--------GGGAATAGG--ACAGGAAGGTATTCTGGCATAGTCCAGT--GAG---TGCCAGCCCCTCTG------------CAGGCTGGTC-------------TTCAAGACCCTAGCGCCAGTCAGCAGCTTGGGCC---TGCAGTATGACACAGGCTTCCTAGGAGGGAAGGCTATCTCAAAAGGACT--CCCCATTAACAA--T---TCTCTCGTCCACGTTGCAGTACACATCAAGCTCCTCTGGGGGAGAAAGCTCCTGTGAGGAAGGCAGAATGCGCAGGCCCACCCAGCTGAGACCCTTCCATGCCCGGGCTCCGGTGGATCCAGAATTCCCCCTTGCCCCACTGTCCAGTGATCCTGACTACTCCTCCAGCAGTGAGCAGTCCTGCGACACCGTCATCTACATCGGGCCCAATGGCACAGCCCTGTCTGACAAGGAACTCACTGACAATGAGGGGCCCCCAGACTTTGTGCCCATTGTGCCAGCCCTACAGAAGACCAGAGGTGACAGCCGGCCGGGGGAGGCAGCAGAGGCTGCAGCCAGCAAGTCAGAAAGGGACTGTCTGAAGTGCAATACGTTTGCTGAGCTGCAGGAAAGACTAGATTGCATAGATGGCAGCGAAGAACCCAGTAAGTTTCCCTTCGAAGAGCTGCCCATCCAGTTCGGGCCGGAGCAAGCTGGCAGATGTGCTCCTTTAAGCCAAGCAGTGGGGCCAGACACACCCTCTGAGTCTGAAAAGGAAGATAACGGCTCAGACAATGGCCAATTGACCGAGAGGGAAGGCACAGAGCTTCCAGCCTCCAAGGCACAGCGGAATCGGTCCCCTGC------CCCTACTGTGACACGCAGCAGCAGCCCCAGTCCAGCCTCACCACGGAGCATCCCGGGCAGCAGTAGCCAGCACAGTACCTCCCAGCTCACACAGAGCCCCAGTCTCCAGAGCAGCCGGGAGAGTCTGAACTCATGTGGCTTCGTGGAGGGCAAGCCCAGACCCATGGGCTCCCCGAGGCTAGGCATTGCCAGTCTGTCCAAGACCTCAGAGTACAAACCTCCCAGTTCTCC-CTCTCAGAGGTGCAAAGTCTACACCCAGAAGGGGGTCCTGCCCTCCTCTGCCCCACCACCTTCCCTGAGCAAGGACTCTGGCATGGTCTCCAGTGAATCCTTGCTTCAGCCCGACGTGCGCACTCCCCCAGTTGGAATGAGTCCCCAG-----------GTTTTGAAGAAATCCATGTCTGCCGGGAGCGAAGGGTTTCCCGGAACTCTAGTTGACGGTGAGGACCAGGAAGGCCCTCCAGCGGACTCTAAGAAGGAGATTCTGAGCACCACAATGGTGACTGTGCAACAGCCCCTGGAGCTGAATGGTGAGGATGAGTTGGTCTTCACACTGGTGGAGGAGCTGACCATCAGCGGGGTGCTCGACAGTGGACGCCCTACCAGCATCATCAGCTTCAACAGTGACTGCTCCGTGCAGGCCCTGGCCTCAGGCTCCCGGCCCGTCAGCATCATCAGCAGCATCAGCGAGGATCTGGAGTGCTACTCCAGCATGGCCCCCGTCTCCGAGGTGAGCATCACGCAGTTCCTGCCTCTCCCAAAGCTGGGCCTGGATGAGAAGGCTCGGGACGCGGGCAGCCGGCGTTCCTCCATCAGCTCCTGGCTGAGCGAGATGAGCGCGGGCAGTGATGGCGAGCAGTCATGCCACAGCTTCATAGCCCAGACGTGCTTTGGGCATGGGGAAGCCATGGCAGAACCCCCAGCCTCGGAGTTTGTCAGCAGCATCCAGAACACGGCAGTGGTGTGCAGAGAGAAGCCCGAGGTGGGCCCTGACAACCTGCTCATCTTATCTGAGATGGGGGAAGAGTCTGGCAACAAAGCCGCTCCCATCAAAGGCTGCAAAATCTCAACGGTGGGCAAGGCCATGGTCACCATCTCCAACACAGCCAGCCTGAGCAGCTGCGAAGGGTACATCCCCATGAAGACCAACATCACCGTTTACCCCTGCATCGCCATGAGCCCCCGAAACGTGCAAGAGCCTGAGTCCTCCACTG---CCACCCCAAAGGTGAGCCCCAAAGCATCCCAGGCCCAGGAAAGCAAGGAAC---CCAGTACAAGGAGAGAGATGAAATTTGAGGATCCTTGGCTTAAACGAGAAGAAGAGGTGAAAAGGGAGAACGCTTACTCCAGCGAGGAAGG---GGTTAAGTGTGAGCCGCTCC i mm10.chr1 C 0 C 0 s canFam3.chr7 36503585 2906 + 80974532 GGCTGCAGTGGA---TGAAGGCCC-TTGAGGAGTCCGACCCCGGAGTGGAGTCCGAGGGAACCGGGTCAGTATTTCTGATCCCCGAGCTCCAGGGATAGGGGTGTGCACTGCTGCCCGTGCTGCC--CATGCTGCC----CGGCAACCA-TTCAGGGTAGGAAAACCCTCAGGC----C--CACAAAGCCCTTTCTCCACCACA--------GCTG---CCAGTCATCCCTCCCAGGCCCCTACTGGGGAGCGCTGGCCCTACCTC-GAGGTAGTTCAGATGGGCCACTGCTACTTTGGGATGAAACACTGGGGAGGGATGAGAAATA--CTGTTTCTCTCTCTCCCTGCCTTGGTCCCATGAAGGTCGAGACCATGTCCTTTGAGTGGTTGAGCCCAAAGAGGG----------TTGTTAGCTCCTTGCTCGCATGGCC--CTACTTTCCTTGCCTTTCCAGGAATCCTTCCCAGGCTCCTGGGTTTTGCCACGTTAA---------CTCAGTGGTTTCTGGTTGA-TGCGCAGGGTCTGCTAG---------------CGTTCTCAGGCAGAGGC-AAGCCTGGACAATGGTGGTGTGACA--AGAATGTGCCAGAAAGCCACCACGATTGTGGTCGT---------GGGCCAGCTTGTA----AAGTGGGAAGCTTTT---TCCCCCTCTCC-TTTTGTGTCTGTTT----TTTGGAGAG--------------------------GAAGGAGGGTGCCAAGGG--AGTGACTCCTTAGCCCTTGGGAGGTCAGACATTGCCTGGGCT-GGTCACCTCCTTCTCTGTG------------CCCTGACGTGCCACACAGGGGCTGTTCTTCCCACAAGAGGCCATGATGTGCCAGGCT-GGGGGTGCCGCTCAGGCACATCATGAGAAATG---GCCCAGTGCAGGGAGGCCAACCTGGCTAGCCCCAGGATGGGGTTGGGGGGAACCTGTGTGGAGTCAGCTG------------------------TGGGCTCATGAAGGTGGGGGCTGGCTTGGGAGAGCTGTCCCTGTTGACTT--CCCTCCTCTCACCCA-----CAGTACACATCGAGCTCCTCCGGGGGCGAGAGCTCCTGCGAAGAAGGCAGGATGCGCAGGCCCACCCAGCTGAGACCCTTCCAGGCCAGGGCCTCGGTGGACCCCGATTTCCCCATCCCTCAGCTGTCCAGCGACCCTGACTACTCCTCCAGCAGCGAGCAGTCCTGCGACACAGTCATCTACATCGGGCCCAATGGCACGGCTCTCTCTGACAAGGAGCTCACGGACAACGAGGGCCCCCCTGACTTCGTCCCCATCGTGCCAGCCCTACAGAAGGCCAGGGGTGATAGCCGGCCTGTGGAGGCCGGAGGGGCCGCGGCCAGCCACTCAGAGAGGGACTGTTTGAAGTGTAACACGTTTGCTGAGCTGCAGGAGAGGCTGGGCTGCATTGATGGCAGCGAAGAGCCCAGTCAGTTTCCTTTCGAAGAGCTGCCTGCCCAGTTTGGGGCGGAGCAGGCAAGCAAGTGTCCCCTGTTAAGCCAGGGGGCCGGGACAAACCCACTCTGTGAGTCTGATAGGGAAGATAGCGGGTC---TGACGGCCAGTCGACTGACAGAGAAGGCACTGACCCTCCTGCCTCCAAGATGCAGAGAAATCACTCGCCCGTCCCAGGCCCTGGCCCGGCGCTGCCCAGCAGCCCCACCCCTGCCTCGCCGAGGAGCATCCCGGGCAGCAGCAGCCAGCACAGCGCCTC------------------CAGCCTCCAGAGCAGCCGGGAAAGCCTGAACTCCTGTGGCTTTGTGGAAGGCAAGCCCCGGCCCATGGGCTCCCCGCGGCTGGGCATCGCCAGCCTGTCCAAGACCTCAGAGTACAAGCCGGCCAGCTCTCC-CTCTCAGAGATGCAAAGTCTACACCCAGAAGGGTGTCCTGCCTTCTCCCGCCCCCCTGCCTCCATTGAGCAAGGATTCCGGCATGGTATCTAGTGAGTCCCTGCTGCAGCCCGAGGTACGCACCCCCCCAGTTGGAATGAGCCCCCAG-----------GTTTTGAAGAAATCCATGTCCGCTGGGAGTGAAGGGTTCCCCGAGAGCCCCGGTGATGACGAGCCCCAGGCAGCAGCTTCTCCAGATTCTAAGAAGGAGATCCTGAGCACCACCATGGTGACCGTGCAGCAGCCGCTGGAGCTGAACGGCGAGGATGAGCTGGTGTTCACGCTGGTGGAGGAGCTGACCATCAGCGGGGTCCTGGACGGCGGCCGCCCCACCAGCATCATCAGCTTCAACAGCGACTGCTCCGTGCAGGCCCTGGCCTCGGGCTCCCGGCCCGTCAGCATCATCGGCAGCATCAGCGAGGACCTGGAGTGCTACTCCAGCGTGGCGCCTGTCTCTGAGGTCAGCATCACGCAGTTCCTGCCCCTCCCGAAGCTGGCCCTGGACGAGAAGGCCGGCGAGGCCGGGAGCCGACGTTCCTCCATCAGCTCCTGGCTGAGCGAGATGAGCGCCGGCAGCGACGGCGAGCAGTCCTGCCACAGTTTCATAGCGCAGACGTGCTTCGGGCACGGGGAGGCCATGGCGGAGCCTCCGGCCTCGGAGCTCATTGGCAGCATCCAGAACAGCGCCGTGGTGTGCCGAGAGAAGCCCAAGGCGGGCCCCGACAACTTGCTCATCTTGTCTGATGTGGGTGAAGACCCTTTCAACAAGGCGACCCCCATCAAGGGCTGCAAGATATCCACACTGGGCAAGGCCATGGTCACCATCTCCAACACGGCCGATCTGGGCAGCTGCGAAGGCTACATCCCCATGAAGACCAACATTACGGTCTACCCCTGCATAGCCATGGGCCCCCGGCCCGTCCAGGAGTCTGAGGCGTCCGACGGCCCCGCCGTCAGCTCGGTGCCCAGAGCCACCCAGTCCCAGGACGGCAGAGAGATGGGCGGGGCAAAGACAGAGATGAAATTTGAGGACCCTTGGCTAAAACGAGAAGAGGAGGTAAAAAAGGAGAGCGCCTATCCCGGTGAAGAGGG---GACTGGGTGTGAGGCCGCGA i canFam3.chr7 C 0 C 0 a score=1887101.000000 s hg38.chr1_KI270759v1_alt 385407 544 + 425601 CGGGCCCCTCGAATGCTGAGACCAgagcagagcaggagcaggacggaaagcccagtccgggagacaggctcagcagcagcagcggagaggTGTCGGCCTCCCCGGTCACTGACAACTTCAGGAGGGTCGTGGATGGGTGTGAGATGGCCCTGCCCGGTTTGGCCACCCAGAGCCCCGTGCATCCCAACAAAAGCGTCAAGTCCAGCAGCCTTCCCAGGGCCTTTCAGAAGGCCAGCCGGCAGGAGGAGCCGGACAGCCTCTCCTATTACTGCGCTGCTGAGACCAACGGGGTGGGTGCAGCCTCGGGCACCCCGCCCTCCAAGGCTACCCTGGAGGGGAAGGTGGCTTCCCCCAAGCACTGTGTTCTGGCTCGGCCCAAAGGGACTCCCCCTCTGCCCCCTGTCCGAAAGTCCAGCCTGGACCAGAAGAACCGGGCCAGCCCTCAGCACAGTGCCAGCGGCAGCGGCACCAGCAGCCCCCTGAACCAACCAGCCGCCTTCCCGGCGGGCCTCC---CAGACGAGCCTAGCGGCAAGACGAAGGACGC s panTro4.chr1 225143742 544 + 228333871 CGGGCCCCTCGAATGCTGAGACCAGAGCAGAGCAGGAGCAGGACGGAAAGCCCAGCCCGGGAGACAGGCTCAGCAGCAGCAGCGGAGAGGTGTCGGCCTCCCCGGTCACTGACAACTTCAGGAGGGTCGTGGATGGGTGTGAGATGGCCCTGCCTGGTTTGGCCACCCAGAGCCCCGTGCATCCCAACAAAAGCGTCAAGTCCAGCAGCCTTCCCAGGGCCTTTCAGAAGGCCAGCCGGCAGGAGGAGCCGGACAGCCTCTTCTATTACTGCGCTGCTGAGACCAACGGGGTGGGTGCAGCCTCGGGCACCCAGCCCTCCAAGGCTACCCCGGAGAGGAAGGTGGCTTCCCCCAAGCACTGTGTTCTGGCTCGGCCCAAAGGGACTCCCCCTCTGCCCCCTGTCCGAAAGTCCAGCCTGGACCAGAAGAACCGGGCCAGCCCTCAGCACAGTGCCAGCAGCAGCGGCACCAGCAGCCCCCTGAACCAACCAGCCGCCTTCCTGGCGGGCCTCC---CAGACGAGCCTAGCGGCAAGACGAAGGACGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226514282 544 - 229942017 CGGGCCCCTCGAATGCTGAGACCAGAGCAGAGCAGGAGCAGGAAGGAAAGCCCAGCCCGGGCGACAGGCTCAGCAGCAGCAGCGGGGAGGTGTCGGCCTCCCCTGTCACTGACAACTTCAGGAGGGTCGTGGATGGGTGTGAGATGGCCCTGTCTGGTTTGGCCACCCAGAGCCCCGTGCATCCCAACAAAAGCGTCAAGTCCAGCAGCCTTCCCAGGGCGTTTCAGAAGGGCAGCCGGCAGGAGGAGCCGGGCAGCCTCTTCTATTACTGCGCTGCTGAGACCAATGGGGTGGGTGCAGCCTCGGGCACCCAGCCCTCCAAGGCTACCCTGGAGAGGAAGGTGGCTTCCCCCAAGCACTGTGTCCTGGCTCGGCCCAAAGGGACTCCCCCTCTGCCCCCTGTCCGAAAGTCCAGCCTGGACCAGAAGAACCGGGCCAGCCCTCAGCACAGTGCCAGCAGCAGCGGCACAAGCAGCCCCCTGAACCAACCAGCCACCTTCCTGGCGGGCCTCC---CAGACGAGCCTAGCGGCAAGACGAAGGACGC i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17107978 544 - 229590362 CGGGCGCCTCGAACGCGGAGACCAGAGCTGAGCAGGAGCAGGACAGAAAGCCCAGCCCGGGCGACAGGCTCAGCAGCAGCAGCGGGGAGGTGTCGGCCTCCGCCGTCACTGACAACTTCAGGAGGGTCGTGGACGGGTGTGAGATGGCCCTGCCTGGTTTGGCCACCCAGAGCCCCATGCATCCCAACAAAAGCGTCAAGTCCAGCAGCCTTCCCAGGGCGTTTCAGAAGGCCAGCCGGCAGGAGGAGCCGGACAGCCTCTTCTACTACTGCGCTGCCGAGACCAACGGGGTGGGTGCAGCCTCGGGCGCCCAGCCCTCCAAGGCTACCCTGGAGAGGAAGGTGGCTTCCCCCAAGCACTGTGTCCTGGCTCGGCCCAAAGGGGCTCCCCCGTTGCCCCCTGTCCGAAAGTCCAGCCTGGACCAGAAGAACCGGGCCAGCCCTCAGCACAGTGCCAGCAGCAGCGGCACCAGCAGCCCCCTGAACCAACCAGCCGTCTTCCTGGCGGGCCTCC---CAGATGAGCCTGGCGGCAAGACGAAGGACGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223871859 544 - 227556264 CGGGCGCCTCGAACGCGGAGACCAGAGCTGAGCAGGAGCAGGACAGAAAGCCCAGCCCGGGCGACAGGCTCAGCAGCAGCAGCGGGGAGGTGTCGGCCTCCGCCGTCACTGACAACTTCAGGAGGGTCGTGGACGGGTGTGAGATGGCCCTGCCTGGTTTGGCCACCCAGAGCCCCATGCATCCCAACAAAAGCGTCAAGTCCAGCAGCCTTCCCAGGGCGTTTCAGAAGGCCAGCCGGCAGGAGGAGCCGGACAGCCTCTTCTACTACTGCGCTGCCGAGACCAACGGGGTGGGTGCAGCCTCGGGCGCCCAGCCCTCCAAGGCTACCCTTGAGAGGAAGGTGGCTTCCCCCAAGCACTGTGTCCTGGCTCGGCCCAAAGGGACTCCCCCGTTGCCCCCTGTCCGAAAGTCCAGCCTGGACCAGAAGAACCGGGCCAGCCCTcagcacagtgccagcagcagcggcaccagcagcCCCCTGAACCAACCAGCCGCCTTCCTGGCGGGCCTCC---CAGATGAGCCTGGCGGCAAGACGAAGGACGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16917273 544 - 220367699 CGGGCCCCTCAAACGCGGAGACCAGAGCTGAGCAGGAGCAGGACAGAAAGCCCAGCCCGGGCGACAGGCTCAGCAGCAGCAGCGGGGAGGTGTCAGCCTCCCCTGTCACTGACAACTTCAGGAGGGTCGTGGACGGGTGTGAGATGGCTCTGCCTGGTTTGGCCACCCAGAGCCCCATGCATCCCAACAAAAGCGTCAAGTCCAGCAGCCTTCCCAGGGCGTTTCAGAAGGCCAGCCGGCAGGAGGAGCCGGACAGCCTCTTCTACTACTGCGCTGCCGAGACCAACGGGGTGGGTGCAGCCTCGGGCGCCCAGCCCTCCAAGGCTACCCTGGAGAGGAAGGTGGCTTCCCCCAAGCACTGTGTCCTGGCTCGGCCCAAAGGGACTCCCCCGTTGCCCCCTGTCCGAAAGTCCAGCCTGGACCAGAAGAACCGGGCCAGCCCTCAGCACAGTGCCAGCAGCAGTGGCACCAGCAGCCCCCTGAACCAACCAGCCGCCTTCCTGGCGGGCCTCC---CAGATGAGCCTAGCGGCAAGACGAAGGACGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82719650 544 + 85787240 CGGGCCCCTCGAACGCGGAGACCAGAGCTGAGCAGGAGCAGGACAGAAAGCCCAGCCCCGGCGACAGGCTCAGCAGCAGCAGCGGGGAGGTGTCGGCCTCCCCCGTCACTGACAACTTCAGGAGGGTCGTGGACGGGTGTGAGATGGCTCTGCCTGGTTTGGCCACCCAGAGCCCCATGCATCCCAACAAAAGCGTCAAGTCCAGCAGCCTTCCCAGGGCGTTTCAGAAGGCCAGCCGGCAGGAGGAGCCGGACAGCCTCTTCTACTACTGCGCTGCTGAGACCAACGGGGTGGGTGCAGCCTGGGGCGCCCAGCCCTCCAAGGCTACCCTGGAGAGGAAGGTGGCTTCCCCCAAGCACTGTGTCCTGGCTCGGCCCAAAGGGACTCCCCCTTTGCCCCCTGTCCGAAAGTCCAGCCTGGACCAGAAGAACCGGGCCAGCCCTcagcacagtgccagcagcagcggcaccagcagcTCCCTGAACCAACCAGCCGCCTTCCTGGCGGGCCTCC---CAGATGAGCCTAGCGGCAAGACGAAGGACGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14433756 544 - 49578535 TGGGTCCCTTGAAGGCCGAGCCCAGGACAGAGCAGGAGCAGGACAGAAAGCCCAGCCCAGGCGACAGGCTCAGCAGCAGCAGCGGGGAGGTGTCGGCGTCCCCTGGCACCGACAGCTTCAGGAGGGTCGTGGATGGATGTGAGATGGCCCTGCCTGGTTTGGCCACCCAGAGCCCCGTGTATGCCAACAGAAGTGTCAAGTCCAGCAGCCTTCCTAGGGCATTTCAGAAGGCCAGCCGGCAGGAGGAGCCCGACAGCCTCTTCTATTACTGTGCTGCTGAGACCAGCGGGGTGGGCCCAGTCCCCGGCACGCAGCCCTCCAAGGCTACCCTGGAGAGGAAGGTGGCTTCCCCTAAGCACTGTGTCCTGGCTCGGCCCAAAGGCACTCCCCCTCTGCCCCCTGTCCGAAAGTCCAGCCTGGACCAGAAGAACCGGGCCAGCCCCCAGCACAGTGCCAGCAGCAGCGGCACCAGCAGCCCCCTGAACCAGCCAGCCGCCTTCCCAGCGGGCCTCC---CAGATGAGCCCAGCGGCAAGATGAAGGATGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178916739 541 + 195471971 CAAGCTCCCTGAAGACTGAAGGTAAGTCAGAGCAGGAACTGGATGGCAGGCCCAGCTCAGGCAACAGGCTGAGCAGCAGCAGCTCAGAGGCAGCCGCCTTTCAAGGGACTGATAACGTTAGGAGAGTCGTGGATGGCTGTGAGATGGCCCTGCCTGGCTTGGTGGCCCAAAGTCCCCTCCATGTCAACCGAAACCTAAAGTCAAGCAGCCTCCCAAGGGCATTTCAGAAAGCTGACAGGCACGAGGAGCTGGACAG---CTTCTACCATTGCCTGGCAGACAGCAATGGCTTCAGTGCTGCTTCGGGCATCCCATCCTCGAAGACAACCCTAGAGAGGAAAGTTGCTTCACCCAAGCATTGCGTCCTGGCAAGGCCCAAAGGGACCCCGCCTCTGCCTCCTGTCCGCAAGTCTAGCTTGGACCAGAAGAACAGGGCCAGCCCTCAACACGGTGGTGGCAGCAGCAACACCAGCAGCCCCCTGAACCAGCCAGCTACCTTCTTGGCTTGCTTCC---CTGATGAGTCCAACGGCAAGACTAAGGATGT i mm10.chr1 C 0 C 0 s canFam3.chr7 36506491 526 + 80974532 CAGGCCCCCCGAAGCCCGAGGCCAGGGCAGAACA------GGACAGGAAGGCTAGCCCTGGGGACAGGCTGAGCAGCAGCAGCGGGGAGGTGTCCGCCTCCCCTGGGAGCGACACCTTCAGGAGGGTCGTGGATGGCTGCGAGATGGCCCTGCCTGGTGTGGCTGCCCAGAGCCCCGTGCACGCCAACAGGAGCCTGAAGTCCAGCAGCCTGCCCAGGGCTTTCCAGAAAGCCAGCAGGCAGGAGGAGCTGGGCAGCCTGTTCTACCACTGCCCGGCGGAGAGCAATGGGCTGGGCACGGC------------GCCCTGCAAGGCGACCCTGGAGAGGAAGGTGGCGTCGCCCAAGCACGGCGTCCTGGCTCGGCCCAAAGGGACGCCCCCCCTGCCGCCGGTCCGCAAGTCCAGCCTGGACCAGAAGAATCGGGCCAGCCCCCAGCACAGCACCTGCAGCAGCGGCGCGGGCAGCCCGTCGCACCCCCCGGCGCCCT---CGGCGGGCCCGCAGGCCGACGAGGCGGGCGGCAAGGCGAAGGAGGC i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140404688 1394 - 143122389 M a score=3975593.000000 s hg38.chr1_KI270759v1_alt 385951 987 + 425601 CAGCAGCAGCAGCAAGCTCTTCAGTGCCAAGCTGGAGCAGCTGGCCAGCAGAAGCAACTCGCTGGGCAGGGCGACAGTCAGCCACTACGAATGCCTCTCCCTGGAGCGGGCCGAGAGCCTGTCCTCCGTGAGCTCCCGGCTGCACGCGGGCAAGGACGGCACCATGCCCCGCGCGGGGAGGAGCCTGGGCCGCAGCGCCGGGACCTCGCCCCCCAGCT------------------CCGGG-------------------------------------------GCCTCGCCCAAGGCCGGCCAGTCCAAGATCTCCGCCGTGAGCAGACTCCTCCTGGCCAGCCCCAGAGCGC---GCGGCCCGTCCGCCTCCACCACCAAAACCCTCAGCTTCTCCACCAAGTCCCTGCCGCAGGCGGTGGGCCAGGGCTCCAGCTCGCCCCCCGGTGGGAAGCACACGCCCTGGTCCACGCAGTCCCTCAGCAGGAACAGGAGCTCGGGCCTGGCCTCCAAGCTTCCCCTGCGGGCCGTCAGCGGGCGCATCTCGGAGCTGCTGCAGGGTGGCGCGGgcgcccggggcttgcagctgc------gggccgggcccgaggcggaggcgcgcgggggggccctggccgaggacgagcccgcggccgcgCACCTGCTCCCGTCGCCCTACAGCAAGATCACGCCCCCGCGGAGGCCCCACCGCTGCAGCAGCGGCCACGGCAGCGACAACAGCAGCGTGCTGAGCGGGGAGCTCCCGCCGGCCATGGGGAAGACGGCCCTGTTCTACCACAGCGGCGGCAGCAGCGGCTACGAGAGCGTGATGCGGGACAGCGAGGCCACCGGCAGCGCGTCCTCGGCGCAGGACTCCACGAGCGAGAACAGCAGCTCCGTGGGCGGCAGGTGCCGGAGCCTCAAGACCCCGAAGAAACGCTCCAATCCAGGTAGGCGGCTGGGCG----------CAGGGA--------------------CGCGGGTGAGGAGGGCGGCAGGTGGGCGAGCTGCCCAAACCCCA-CTGCCAGGGTGTC------CCGTGCCC-TGGGG----AGGGGGCGTCCAGGC s panTro4.chr1 225144286 978 + 228333871 CAGCAGCAGCAGCAAGCTCTTCAGTGCCAAGCTGGAGCAGCTGGCCAGCAGAACCAACTCCCTGGGCAGGGCGACGGTCAGCCACTACGAATGCCTCTCCCTGGAGCGGGCCGAGAGCCTGTCCTCCGTGAGCTCCCGGCTGCACGCAGGCAAAGACAGCACCATGCCCCGCGCGGGGAGGAGCCTGGGCCGCAGCGCCGGGACCTCGCCCCCCAGCT------------------CCGGG-------------------------------------------GCCTCGCCCAGGGCCAGCCAGTCCAAGATCTCCGCCGTGAGCAAACTCCTCCTGACCAGCCCCAAAGCGC---GCAGCCTGTCCACCTCCACCACCAAAACCCTCAGCTTCTCCACCAAGTCCCTGCCGCAGGCGGTGGGCCAGAGCTCCAGCTTGCCCCCCGGTGGGAAGCACATGTCCTGGTCCACGCAGTCCCTCAGCAGGAACAGGAGCTCGGGCCTGGCCTCCAAGCTTCCCCTGCGGGCCGTCAATGGGCGCATCTCAGAGCTGCTGCAGGGTAGCGCGGGCGCCCGGGGCTTGCAGCTGC------GGGCCGGGCCCGAGGCGGAGGAGCGCGGGGGGGCCCTGGCCGAGGACAAGCCCGCGGCCGCGCACCTGCTCCCGTCGCCCTACAGCAAGATCACGCCCCCGCGGAGGCCCCACCGCTGCAGCAGCGGCCACGGCAGCGACAACAGCAGCGTGCTGAGCGGGGAGCTCCCGCCGGCCATGGGGAAGACGGCCCTGTTCTACCACAGCGGCGGCAGCAGCGGCTACGAGAGCATGATGCGGGACAGCGAGGCCACCGGCAGCGCGTCCTCAGCGCAGGACTCCACGAGCGAGAACAGCAGCTCCGTGGGCGGCAGGTGCCGGAGCCTCAAGACCCCGAAGAAACGCTCCAATCCAGGTAGGCGGCTGGGCG----------CAGGGA--------------------CGCGGGTGAGGAGGGCGGCAGGTGGGCGAACTGCCCAAACCCCA-CTGCCAGGGTGTC------CCGTGCCCGTGGGG----AGGGG---------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226514826 958 - 229942017 CAGCAGCAGCAGCAAGCTCTTCAGTGCCAAGCTGGAGCAGCTGGCCAGCAGAACCAACTCCCTGGGCAGGGCGACGGTCAGCCACTACGAATGCCTCTCCCTGGAGCGGGCCGAGAGCCTGTCCTCCGTGAGCTCCCGGCTGCACGCAGGCAAAGACAGCACCATGCCCCGCGCGGGGAGGAGCCTGGGCCGCAGCGCCGGGACCTCGCCCCCCAGCT------------------CCGGG-------------------------------------------GCCTCGCCCAAGGCCAGCCAGTCCAAGATCTCCGCCGTGAGCAAACTCCTCCTGACCAGCCCCAAAGCGC---GCAGCCTGTCCACCTCCACCACCAAAACCCTCAGCTTCTCCACCAAGTCCCTGCCGCAGGCGGTGGGCCAGAGCTCCAGCTTGCCCCCCGGTGGGAAGCACATGTCCTGGTCCACGCAGTCCCTCAGCAGGAACAGGAGCTCAGGCCTGGCCTCCAAGCTTCCCCTGCGGGCCGTCAATGGGCGCATCTCAGAGCTGCTGCAGGGTAGCGCGGGCGCCCGGGGCTTGCAGCTGC------GGGCCGGGCCCGAGGCGGAGGAGCGCGGGGGGGCCCTGGCCGAGGACAAGCCCGCGGCCGCGCACCTGCTCCCGTCGCCCTACAGCAAGATCACGCCCCCGCGGAGGCCCCACCGCTGCAGCAGCGGCCACGGCAGCGACAACAGCAGCGTGCTGAGCGGGGAGCTCCCGCCGGCCATGGGGAAGACGGCCCTGTTCTACCACAGCGGCGGCAGCAGCGGCTACGAGAGCATGATGCGGGACAGCGAGGCCACCGGCAGCGCGTCCTCAGCGCAGGACTCCACGAGCGAGAACAGCAGCTCCGTGGGCGGCAGGTGTCGGAGCCTCAAGACCCCGAAGAAACGCTCCAATCCAGGTAGGCGGCT--------------------------------------------------GGAGGGCGGCAGGTGGGCGAACTGCCCAAACCCCA-CTGCCGGGGTGTC------CCGTGCCCGTGGGG----AGGGG---------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140406082 956 - 143122389 CAGCAGCAGCAGCAGGCTCTTCAGTGCCAAGCTGGAGCAGCTGTCCAGCAGAACCAACTCCCTGGGCAGGGCGACGGTCAGCCACTACGAATGCCTCTCCCTGGAGCGGGCCGAGAGCCTGTCCTCCGTGAGCTCCCGGCTGCACGCAGGCAAAGACAGCACCATGCCCCGCGCGGGGAGGAGCCCGGGCCGCAGCGCTGGGACCTCGCCCCCCAGCT------------------CCGGG-------------------------------------------GCCTCGCCCAAGGCCAGCCAGTCCAAGATCTCCGCCGTAAGCAAACTCCTCCTGACCAGCCCCAAAGCGC---GCAGCCTGTCCACCTCCACCACCAAAACCCTCAGCTTCTCCACCAAGTCCCTGCCGCAGGCGGTGGGCCAGAGCTCCAGCTTGCCCCCCGGGGGGAAGCACATGTCCTGGTCCACGCAGTCCCTCAGCAGGAACAGGAGCTCGGGCCTGGCCTCCAAGCTTCCCCTGCGGGCCGTCAACGGGCGCATCTCAGAGCTGCTGCAGGGCAGCGCCGGCGCCCGGGGCTTGCAGCTGC------GGGCCGGGCCTGAGGCGGAGGAGCGCGGGGGGGCCCCGGCCGAGGACAAGCCCGCGGCCGCGCACCTGCTCCCGTCGCCCTACAGCAAGATCACGCCCCCGCGGAGGCCCCACCGCTGCAGCAGCGGCCACGGCAGCGACAACAGCAGCGTGCTGAGCGGGGAGCTCCCTCCGGCCATGGGGAAGACGGCCCTGTTCTACCACAGCGGCGGCAGCAGCGGCTACGAGAGCATGATGCGGGACAGCGAGGCCACCGGCAGCGCGTCCTCAGCGCAGGACTCCACGAGCGAGAACAGCAGCTCCGTGGGCGGCAGGTGCCGCAGCCTCAAGACCCCGAAGAAGCGCTCCAATCCAGGTAGGCGGCTGGGCA----------CAGGGA--------------------CGCGGGTGAGGAGGGCGGCAGGTGGGCGAGCTGCCCGAACCCCA-CTGCCAGGCT------------------------------------------ i nomLeu3.chr5 M 1394 C 0 s rheMac3.chr1 17108522 898 - 229590362 CAGCAGCAGCAGCAAGCTCTTCAGTGCCAAGCTGGAGCAGCTGGCCAGCAGAACCAACTCCCTGGGCAGGGCGACGGTCAGCCACTACGAATGCCTCTCCCTGGAGCGGGCCGAGAGCCTGTCCTCCGTGAGCTCCCGGCTGCACGCAGGCAAGGACAGCACCATGCCCCGCGCGGGGAGGAGCCTGGGCCGCAGCGCCGGGACCTCGCCCCCCAGCG------------------CTGGG-------------------------------------------GCCTCCCCCAAGGCCAGCCAGTCCAAGATCTCCGCCGTGAGCAAGCTCCTCCTGACCAGCCCCAAGGCGC---GCAGCCTGTCCACCTCCACCACCAAAACCCTCAGCTTCTCCACCAAGTCCCTGCCGCAGGCGGTGGGCCAGAGCTCCAGCTTGCCCCCCGGCGGGAAGCACATGTCCTGGTCCACGCAGTCCCTCAGCAGGAACCGGAGCTCAGGCCTGGCCTCCAAGCTTCCTCTGCGGGCCGTCAATGGGCGCATCTCGGAGCTGCTACAGGGTAgcgcgggcgcccggggcc---------------------------------------------------------------------------cgcACCTGCTCCCGTCGCCCTACAGCAAGATCACGCCCCCGCGGAGGCCCCACCGCTGCAGCAGCGGCCACGGCAGCGACAACAGCAGCGTGCTGAGCGGGGAGCTCCCGCCGGCCATGGGGAAGACGGCCCTGTTCTACCACAGCGGCGGCAGCAGCGGCTACGAGAGCATGATGCGGGACAGCGAGGCCACCGGCAGCGCGTCCTCGGCGCAGGACTCCACGAGCGAGAACAGCAGCTCCGTGGGCGGCAGGTGCCGGAGCCTCAAGGCTCCGAAGAAACGTTCCAATCCAGGTAGGCGGCTGGGCA----------CAGGGA--------------------CGCGGGTGAGGAAGGAGGCGGGTGGGCGAGCTGCCCGAACCCCA-CTGCCAGGCTGTC------CCGTGCCC------------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223872403 994 - 227556264 CAGCAGCAGCAGCAAGCTCTTCAGTGCCAAGCTGGAGCAGCTGGCCAGCAGAACCAACTCCCTGGGCAGGGCGACGGTCAGCCACTACGAATGCCTCTCCCTGGAGCGGGCCGAGAGCCTGTCCTCCGTGAGCTCCCGGCTGCACGCAGGCAAGGACAGCACCATGCCCCGCGCGGGGAGGAGCCTGGGCCGCAGCGCCGGGACCTCGCCCCCCAGCT------------------CTGGG-------------------------------------------GCCTCCCCCAAGGCCAGCCAGTCCAAGATCTCCGCCGTGAGCAAGCTCCTCCTGACCAGCCCCAAGGCGC---GCAGCCTGTCCACCTCCACCACCAAAACCCTCAGCTTCTCCACCAAGTCCCTGCCGCAGGCGGTGGGCCAGAGCTCCAGCTTGCCCCCCGGCGGGAAGCACATGTCCTGGTCCACGCAGTCCCTCAGCAGGAACCGGAGCTCAGGCCTGGCCTCCAAGCTTCCTCTGCGGGCCGTCAATGGGCGCATCTCGGAGCTGCTACAGGGTAGCGCGGGCGCCCGGGGCTTGCAGCTGCGggccggggccgggcccgaggccgaggagcgcggggcggccctggctgaggacaagcccgcggccgCGCACCTGCTCCCGTCGCCCTACAGCAAGATCACGCCCCCGCGGAGGCCCCACCGCTGCAGCAGCGGCCACGGCAGCGACAACAGCAGCGTGCTGAGCGGGGAGCTCCCGCCGGCCATGGGGAAGACGGCCCTGTTCTACCACAGCGGCGGCAGCAGCGGCTACGAGAGCATGATGCGGGACAGCGAGGCCACCGGCAGCGCGTCCTCGGCGCAGGACTCCACGAGCGAGAACAGCAGCTCCGTGGGCGGCAGGTGCCGGAGCCTCAAGGCTCCGAAGAAACGTTCCAATCCAGGTAGGCGGCTGGGCA----------CAGGGA--------------------CGCGGGTGAGGAAGGAGGCGGGTGGGCGAGCTGCCCGAACCCCA-CTGCCAGGCTGTC------CCGTGCCCGTGGGG----AGAGGACGTCCAGGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16917817 994 - 220367699 CAACAGCAGCAGCAAGCTCTTCAGTGCCAAGCTGGAGCAGCTGGCCAGCAGAACCAACTCGCTGGGCAGGGCGACGGTCAGCCACTACGAATGCCTCTCCCTGGAGCGGGCCGAGAGCCTGTCCTCCGTGAGCTCCCGGCTGCACGCAGGCAAGGACAGCACCATGCCCCGCGCGGGGAGGAGCCTGGGCCGCAGCGCCGGGACCTTGCCCCCCAGCT------------------CTGGG-------------------------------------------GCCTCCCCCAAGGCCAGCCAGTCCAAGATCTCCGCCGTGAGCAAGCTCCTCCTGACCAGCCCCAAGGCGC---GCAGCCTGTCCACCTCCACCACCAAAACCCTCAGCTTCTCCACCAAGTCCCTGCCGCAGGCGGTGGGCCAGAGCTCCAGCTTGCCCCCCGGCGGGAAGCACATGTCCTGGTCCACGCAGTCCCTCAGCAGGAACCGGAGCTCAGGCCTGGCCTCCAAGCTTCCTCTGCGGGCCGTCAATGGGCGCATCTCGGAGCTGCTACAGGGTAgcgcgggcgcccggggcttgcagctgcgggccggggccgggccggaggccgaggagcgcggggcggccctgGCTGAGGACAAGCCCGCGGCCGCGCACCTGCTCCCGTCGCCCTACAGCAAGATCACGCCCCCGCGGAGGCCCCACCGCTGCAGCAGCGGCCACGGCAGCGACAACAGCAGCGTGCTGAGCGGGGAGCTCCCGCCGGCCATGGGGAAGACGGCCCTGTTCTACCACAGCGGCGGCAGCAGCGGCTACGAGAGCATGATGCGGGACAGCGAGGCCACCGGCAGCGCGTCCTCGGCGCAGGACTCCACCAGCGAGAACAGCAGCTCCGTGGGCGGCAGGTGCCGGAGCCTCAAGGCTCCGAAGAAACGTTCCAATCCAGGTAGGCGGCTGGGCA----------CAGGGA--------------------CGCGGGTGAGGAAGGAGGCGGGTGGGCGAGCTGCCCGAACCCCA-CTGCCAGGCTGTC------CCGTGCCCGTGGGG----AGAGGGCGTCCAGGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82720194 971 + 85787240 CAGCAGCAGCAGCAAGCTCTTCAGTGCCAAGCTGGAGCAGCTGGCCAGCAGAACCAACTCCCTGGGCAGGGCGACGGTCAGCCACTACGAATGCCTCTCCCTGGAGCGGGCCGAGAGCCTGTCCTCCGTGAGCTCCCGGCTGCACGCAGGCAAGGACAGCACCATGCCCCGCGCGGGCAGGAGCCTGGGCCGCAGCGCCGGGACCTCGCCCCCCAGCT------------------CTGGG-------------------------------------------GCCTCCCCCAAGGCCAGCCAGTCCAAGATCTCCGCCGTGAGCAAGCTCCTCCTGACCAGCCCCAAGGCGC---GCAGCCTGTCCACCTCCACCACCAAAACCCTCAGCTTCTCCACCAAGTCCCTGCCGCAGGCGGTGGGCCAGAGCTCCAGCTTGCCCCCCGGCGGGAAGCACATGTCCTGGTCCACGCAGTCCCTCAGCAGGAACCGGAGCTCAGGCCTGGCCTCCAAGCTTCCTCTGCGGGCCGTCAATGGGCGCATCTCGGAGCTGCTGCAGGGTAGCGCGGGCGCCCGGGGCTTGCAGCTGCgggccggggccgggcccgaggccgaggagcgcgggggggccctggctgaggacaagcccgcggccgCGCACCTGCTCCCGTCGCCCTACAGCAAGATCACGCCCCCGCGGAGGCCCCACCGCTGCAGCAGCGGCCACGGCAGCGACAACAGCAGCGTGCTGAGCGGGGAGCTCCCGCCGGCCATGGGGAAGACGGCCCTGTTCTACCACAGCGGCGGCAGCAGCGGCTACGAGAGCATGATGCGGGACAGCGAGGCCACCGGCAGCGCGTCCTCGGCGCAGGACTCCACGAGCGAGAACAGCAGCTCCGTGGGCGGCAGGTGCCGGAGCCTCAAGGCTCCGAAGAAACGTTCCAATGCAGGTAGGCGGCTGGGCG----------CAGGGA--------------------CGCGGGGGAGGAAGGAGGCGGGTGGGCGAGCTGCCCGAACCCCA-CTGCCAGGCTGTC------CCGTGC--------------------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14434300 1000 - 49578535 CAGCAGCAGCAGCAAGCTCTTCAGTGCCAAGCTGGAGCAGCTGGCCAGCAGGACCAACTCTCTGGGCAGGTCGACCGTCAGCCACTATGAATGCCTCTCCCTGGAGCGGGCCGAGAGCCTGTCCTCCGTGAGCTCCCGGCTGCACGCAGGCAAGGACAGTACCATGCCCCGCGCGGGGAGGACCCTGGGCCGCGGCGCAGGGACGTCGCCCCCCAGCTCC------------TCCGCCGGG-------------------------------------------GCCTCGCCCAAGGCCAGCCAGTCCAAGGTCTCCGCCGTGAGCAAACTCCTCCTGGCCAGCCCCAAGGCGC---GCAGCCTGTCCACCTCCACCACCAGGACCCTCAGCTTCTCCACCAAGTCTCTGCCTCAGTCGGTGGGGCAGAGCCCCGGCGCACCACCGGGCGGGAAGCACATGTCCTGGTCCACGCAGTCGCTCAGCAGGACCCGCAGCTCGGGCCTGGCCTCCAAGCTGCCCCTGCGCGCCGTCAACGGGCGCATCTCGGAGCTGCTGCAGGGCGGCGCGGGCGCACGTGGC-----GGTGC---------CCCGGC-------------------GGGGGACCGGCCCGAGGACAGGCCCGCGGCCGCGCAGCTGCTGCCGTCGCCCTACAGCAAGATCACGCCCCCGAGGAGGCCGCACCGCTGCAGCAGCGGCCACGGGAGCGACAACAGCAGCGTGCTGAGCGGGGAGCTCCCGCCGGCCATGGGGAAGACGGCCCTGTTCTACCACAGCGGTGGCAGCAGTGGCTACGAGAGCATGATGCGGGACAGCGAGGCCACCGGGAGCGCGTCCTCAGCGCAGGACTCCACCAGCGAGCACAGCGGCTCCGTGGGCGGGCGCTGCCGCAGCCTCAAAGCCCCAAAGAAGCGGCCCAATTCAGGTAGGCAGTGGGGCAGGGCCGTGGGCGGGGAGGGCACGGGCGGGCGCGGGCCGTGGACGGGAAGGGCAGTGGGTGGGCGAGCTGCCTGAAGCCC--CTGCCAGGCTGGC------CCGTGGTGAGGGGGCGTCCGGTGGGATCCAGGC i calJac3.chr19 C 0 C 0 s mm10.chr1 178917280 976 + 195471971 CAGTAGCAGCAGTAAGCTCTTCAGCGCCAAGCTGGAACAGCTGGCCAGCAGAAGCAACTCTCTTGGCAGGACAACAGTCAGCCACTACGAATGCTTGTCGTTGGAGAGGGCCGAAAGCCTGTCGTCGGTGAGCTCCCGCATGCATGCCGGCAAAGATAGTACCATGCCCCGCACTGGGAGGAGCCTGGGTCGCAGCACTGGCGCCTCACCACCCAGCTGTGGCATCACTCAGTCCACAGGG-------------------------------------------GCCTCTCCCAAGGCCAGCCAGTCTAAGATCTCTGCAGTGAGCAAGCTCCTGCTGGCCAGTCCTAAATCCCGCAGCAGCCTGTCCACCTCCACCACCAAAACCCTCAGCTTCTCCACCAAGTCCCTGCCACAGTCTGTGGGCCAGAGCTCCAACCTACCGCCCAGCGGGAAACACATGTCCTGGTCCACCCAGTCGCTCAGCAGGAACCGGGGCTCTGGGCTGGCTTCCAAACTGCCGCTAAGAGCGGTCAACGGGCGCATTTCGGAGCTGCTCCAGGGCAGTGCGGGCCCGAGGAGTGCACAGCTGC------------GGGCAGAGGCGGAAGAGCGCAGTGGGGCTCCCTCGGAGGACAAGCCCGCAGCCGCCCACCTGCTGCCCTCGCCCTACAGCAAGATCACCCCTCCGAGGAAGCCGCACCGCTGCAGCAGCGGGCACGGTAGTGATAACAGCAGTGTCCTGAGTGGGGAGCTACCACCTGCCATGGGGAAGACTGCCCTCTTCTACCACAGCGGAGGCAGCAGTGGCTACGAGAGCATGATGAGAGACAGCGAGGCCACCGGCAGTGCATCCTCAGCCCAGGACTCCATGAGCGAGAACAGCAGCTCCGTGGGAGGGAGATGCAGGAGCCTCAAAAACCAAAAGAAAAGGTCCAATTCAGGTGGGTACCTGG-------------CATGGC----------------------TTGGGGGGGACAGAGGCA-----TCAGGCTTCTGGACCCTCACCTCCCCTGTTCTCGACCAGCCATG---------------------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36507017 983 + 80974532 CGCCAGCAGCAGCAGGCTCTTCAGCGCCAAGCTGGAGCAGCTGGCCAGCAGGACCAACTCCCTGGGCCGCGCCGCCGGCAGCCACTACGAGTGCCTGTCGCTGGAGCGGGCCGAGAGCCTGGGCGCCGGCGGCTGGCGGGCGCACGCGGGCAAGGACAGCACGATgccccgcgccggccggagcccgggccgcggcgccggagcctcgcccacc-gcc------------------ccgggccccgcgAAGGCAGTCGCCTCCGAcgcccccgcccccggccccgcgTCCCCCAAGGCCGGCGCCTGCAAGGTCTCGGCCGTGGGCAAGCTCCTGCTGGCCAGCCCCAAGGCGC---GCAGCCTGGCCGCCGCCACCACCAAGACGCTCAGCTTCTCCACCAAGTCCCTGCCGCAGGCGGTGGGCCAGAGCCCGGGCCTGGCGGCC------AAGCCCACGTCCTGGTCCACGCAGTCGCTGAGCCGCAgccggggcgccgggcccgcgtgcaagccgcccccgcgcgccgTCAACGGGCGCATCTCCGAGCTGCTGCAgggcggcgcgggcgcgcggggc------------------------------gccgaggggcgcgcgggggcggcgggcgaggagcggc---cggccgcgcccccccTGCCCTCCCCCTACAGCAAGGTCACCCCGCCGCGCCGGCCGCACCGCTGCAGCAGCGGCCACGGCAGCGACAACAGCAGCGTGCTGAGCGGCGAGCTGCCGCCGGCCATGGGCAAGACGGCCTTGTTCTACCACAGCGGCGGCAGCAGCGGCTACGAGAGCGTGCTCCGCGACAGCGAGGCCACCGGCAGCGCCTCGTCCGCGCACGACTCCACCAGCGACAACAGCAGCTCCGTGGGCGGCCGCTGCCGCAGCCTCAAGGCCCCGAAGAAGCGCTCCAACTCAGGTAggcg--cgggcg----------cggg----------------------cgcgggc--------------gcgggcgtcacccccccaccccg-ccccccgccccac--gtgggcgcgccccccTGC----AGGAGGCGTCCACGC i canFam3.chr7 C 0 I 368 a score=4299.000000 s hg38.chr1_KI270759v1_alt 386938 8 + 425601 CTGGCCTC s macFas5.chr1 223873397 8 - 227556264 CTGGCCTC i macFas5.chr1 C 0 T 77 s papAnu2.chr1 16918811 8 - 220367699 CTGGCCTC i papAnu2.chr1 C 0 T 77 s calJac3.chr19 14435300 8 - 49578535 CTGGCCTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178918256 0 + 195471971 C e canFam3.chr7 36508000 368 + 80974532 I e rheMac3.chr1 17109420 0 - 229590362 C e chlSab2.chr25 82721165 0 + 85787240 C e nomLeu3.chr5 140407038 0 - 143122389 C e ponAbe2.chr1 226515784 0 - 229942017 C e panTro4.chr1 225145264 0 + 228333871 C a score=473.000000 s hg38.chr1_KI270759v1_alt 386946 5 + 425601 TCCTT s calJac3.chr19 14435308 5 - 49578535 TCCTT i calJac3.chr19 C 0 C 0 e mm10.chr1 178918256 0 + 195471971 C e canFam3.chr7 36508000 368 + 80974532 I e rheMac3.chr1 17109420 0 - 229590362 C e chlSab2.chr25 82721165 0 + 85787240 C e papAnu2.chr1 16918819 77 - 220367699 T e macFas5.chr1 223873405 77 - 227556264 T e nomLeu3.chr5 140407038 0 - 143122389 C e ponAbe2.chr1 226515784 0 - 229942017 C e panTro4.chr1 225145264 0 + 228333871 C a score=-13832.000000 s hg38.chr1_KI270759v1_alt 386951 48 + 425601 GCAGGTGGGCGAACTGCCCAAACCCCACTGCCAGGGTGTCCCGTGCCC s nomLeu3.chr5 140407038 11 - 143122389 -------------------------------------GTCCCGTGCCC i nomLeu3.chr5 C 0 I 1 s rheMac3.chr1 17109420 4 - 229590362 ----GTGG---------------------------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223873328 48 - 227556264 GCGGGTGGGCGAGCTGCCCGAACCCCACTGCCAGGCTGTCCCGTGCCC i macFas5.chr1 T 77 I 29 s papAnu2.chr1 16918742 48 - 220367699 GCGGGTGGGCGAGCTGCCCGAACCCCACTGCCAGGCTGTCCCGTGCCC i papAnu2.chr1 T 77 I 29 s chlSab2.chr25 82721165 3 + 85787240 ----------------------------------------CCG----- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14435313 9 - 49578535 TCACGCGGG--------------------------------------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178918256 34 + 195471971 ---GGGGAGGGGTTGGTCTAGATACTAGATCTGGGGT----------- i mm10.chr1 C 0 C 0 e canFam3.chr7 36508000 368 + 80974532 I e ponAbe2.chr1 226515784 0 - 229942017 C e panTro4.chr1 225145264 0 + 228333871 C a score=19556.000000 s hg38.chr1_KI270759v1_alt 386999 28 + 425601 TGGGGAGGGGGCGTCCAGGCCTGGCCTC s panTro4.chr1 225145264 18 + 228333871 ----------GCGTCCAGGCCTGGCCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226515784 18 - 229942017 ----------GCGTCCAGGCCTGGCCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140407050 28 - 143122389 TGGGGAGGGGGCGTCCAGGCCTGGCCTC i nomLeu3.chr5 I 1 C 0 s rheMac3.chr1 17109424 25 - 229590362 ---GGAGAGGGCGTCCAGGCCTGGCCTC i rheMac3.chr1 C 0 C 0 s chlSab2.chr25 82721168 28 + 85787240 TGGGGAGAGGGCGTCCAGGCCTGGCCCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14435322 1 - 49578535 ---------------------------C i calJac3.chr19 C 0 C 0 s mm10.chr1 178918290 9 + 195471971 -------------------CTTGTGCTC i mm10.chr1 C 0 C 0 e canFam3.chr7 36508000 368 + 80974532 I e papAnu2.chr1 16918790 29 - 220367699 I e macFas5.chr1 223873376 29 - 227556264 I a score=1340706.000000 s hg38.chr1_KI270759v1_alt 387027 506 + 425601 TCCTTTCCCACGGCCCGGCACCCCGCGGGGCT--CCGCCGGGGACATCACCGCGGAGGGTTTCTCTGTGAGAAACTGCCCTACTG-CGTGCCGTCATCAGGCTTAGGGCCGTGAATCCCTTGGCGCTCAGCAGGGTGGAAAGGCGAGGGCCCGGATGCAGGTGGCAGCATGACCCGCACCTGCTCGCTCTGGGG----------GCAGCCTGGCTCTTC-GCCGTCCATT--CCCTCACCCC-TGCCCCTCTGTTCAACAACCAAGGATCCTGTGGACGGTTTACAGCCTGTTGAGGGATCAGGTGAGGGTACCTACCCTCATGACCTGGTGGCTTCAGAAGCCCCTCCTGTGAGGTTGG---TGGCCTGCAAGACCCTGGCAGCCTCTCTCAGGGATGTGGGATAACGCACAGATTGTCCCATTGAAAGTGGAAT-GGCGAGGCCCTTCCTCCACCTCCACCCCAAACATATTTGTGGACAGTCATGTTTGCACACCTGCCACAGGGCCTGCAGTGCCCCCCGCCA s panTro4.chr1 225145282 482 + 228333871 TCCTTTCCCACGGCCCGGCACCCCGCAGGGCT--CCGCCA------------------------CTGTGAGAAACTGCCCTACTG-TGTGCCCTCATCAGGCTTAGGGCTGTGAATCCCTTGGTGCTCAGCAGGGTGGAAAGGCGAGGGCCCGGATGCAGATGGCAGCATGACCCACACCTGCTCGCTCTGGGG----------GAAGCCTGGCTCTTC-GCCATCCATT--CCCTCACCCC-TGCCCCTCTGCTCAACAACCAAGGATCCTGTGGACGGTTTACAGCCTGTTGAGGGATCAGGTGAGGGTACCTACCCTCATGACCTGGTGGCTTCAGAAGCCCCTCCTGTGAGGTTGG---TGGCCTGCAACACTCTGGCAACCTCTCTCAGGGATGTGGGATAACGCACAGATTGTCCCATTGAAAGTGGAAT-GGCGAGGCCCTTCCTCCACCTCCACCCCAAACATATTTCTGGACAGTCATGTTTGCACACCTGCCACAGGGCCTGCAGTGCcccccacca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226515802 509 - 229942017 TCCTTTCCCACGGCCTGGCACCCTGCAGGGCTCCCCGCCAGGGACGTCACCGCGGAGGGTTTCTCTGTGAGAAACTGCCCTACTG-TGTGCCGTCATCAGGCTTAGGGCTGTGAATCCCTTGGTGCTCAGCAGGGTGGAAAGGAGAGGGTCCGGATGCAGATGGCACCGTGACCCACACCTGCTCGCTATGGGG----------GAAGCCTGGCTCTTC-GCCATCCATT--CCCTCGCCCCGTGCCCCTCTGCTCAACAACCAAGGATCCTGTGGACGGTTTACAGCCTGTTGAGGGATCAGGGGAGGGCATCTACCCTCATGACCTGGTAGCTTCAGAAGCCCCTCCTGCGAGGTTGG---TGGCCTGCAAGACTCTGGCAGCCTCTCTCAGGGATGTGGGATAACGCACAGATTGTCCCATTGAAAGTGGAAT-GGCGAGGCCCTTCCTCCACCTCCACCCCAAACATATTTGTGGACAGTCATGTTTACACACCTGCCACAGGGCCTGCAGTGCCCCCCACCG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140407078 507 - 143122389 TCCTTTCCCACGGCCCGGCACCCTGCAGGCCT--CCGCCAGGGACATCACCGCGGAGGG-TTCTCTGTGAGAAACTGCCCTACTG-TGTGCCGTCATCAGACTTAGGGCTGTGAATCCCTTGGTGCTCAGCAGGGTGGAGAAGCCAGGGCCCGGATGCAGATGGCAGCATGACCCACACCTGCTCGCTATGGGG----------GAAGCCTGGTTCTTCTGCCATCCATT--CCCTCACCCTGCGCCCCTCTGCTCAACCACCAAGGATCCTGTGGACAGTTTACAGCCTGTTGAGGGATCAGGTGAGGGTACCTACCCTCATGACCTAGTGGCTTCAGAAGCCCCTCCTGTGAGGTTGG---TGGCCTGTAAGACTCTGGCAGCCTCTCTCAGGGACGTGGGATAACGCACAGATTGTCCCGTTGAAGGTGGAATGGGCGAGGCTCTTCCTCCACCTCCACCCCAAACATATTTGTGGACGGTCATGTTTGCGCACCTGCCACGGGGCCTGCAGTG-cccccacca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17109449 507 - 229590362 TCCTTTCCCACGGCCCGGCACCCTGCAGGGCT--CCACCA-GGACATCACCGCGGAGGGTTCCTCTGTGAGAAACTGCCCGACTG-AGTGCCGTCATCAGCCTTAGGACCGTGAATCCCTTGGTGCTCAGCAGGGTGGAAAGGCGGGGGCCCTGATGCACACGGCAGCGTGACCCACACCTGCTCGCTATGGGG----------GAAGCCTGGCTCTTCTGCCTTCCGTT--CCCTCACCCCGTGCCCCTCTGCTCCGCAACCAAGGATCCTGTGGACTGTTCAGCGCCTGTTGAGGGATCAGGTGAGGGTACCCACCCTCATGACCTAGTGGCTTCAGATGCCCCTTGTGTGAGGTTGG---TGGCCTCCAAGACTCTGGCAGCCTCTCTCAGAGATGT-GGATAAAGCACAGTTTGTCCCTTTGAAAGTGCAATGGTCGAGGCCCCTCCTCCACCTCCACCCCAAACATACTTGTGGACAGTCACGTTTGCACACCTGCCACAGGggctgccgtgccccccctcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223873405 507 - 227556264 TCCTTTCCCACGGCCCGGCACCCCGCAGGGCT--CCACCA-GGACATCACCGCGGAGGGTTCCTCTGTGAGAAACTGCCCGACTG-AGTGCCGTCATCAGCCTTAGGACCGTGAATCCCTTGGTGCTCAGCAGGGTGGAAAGGCGGGGGCCCTGATGCACACGGCAGCGTGACCCACACCTGCTCGCTATGGGG----------GAAGCCTGGCTCTTCTGCCTTCCGTT--CCCTCACCCCGTGCCCCTCTGCTCCACAACCAAGGATCCTGTGGACTGTTCAGCGCCTGTTGAGGGATCAGGTGAGGGTAACCACCCTCATGACCTAGTGGCTTCAGATGCCCCTTGTGTGAGGTTGG---TGGCCTCCAAGACTCTGGCAGCCTCTCTCAGAGATGT-GGATAAAGCACAGTTTGTCCCTTTGAAAGTGCAATGGTCGAGGCCCCTCCTCCACCTCCACCCCAAACATACTTGTGGACAGTCACGTTTGCACACCTGCCACAGGggctgccgtgccccccctcc i macFas5.chr1 I 29 C 0 s papAnu2.chr1 16918819 506 - 220367699 TCCTTTCCCACGGCCCGGCACCCTGCAGGGCT--CCACCA-GGACA-CACCGCGGAGGGTTCCTCTGTGAGAAACTGCCCGACTG-AGTGCCGTCATCAGCCTTAGGACCGTGAATCCCTTGGTGCTCAGCAGGGTGGAAAGGCGGGGGCCCTGATGCACATGGCAGCGTGACCCACACCTGCTCGCTATGGGG----------GAAGCCTGGCTCTTCTGCCTTCTGTT--CCCTCACCCCGTGCCCCTCTGCTCCACAACCAAGGATCCTGTGGACTGTTCAGCGCCTGTTGAGGGATCAGGTGAGGGtacccaccctcatgacctagtgGCTTCAGATGCCCCTTGTGTGAGGTTGG---TAGCCTCTAAGACTCTGGCAGCCTCTCTCAGGGATGT-GGATAATGCACAGTTTGTCCCTTTGAAAGTGCAATGGTCGAGGcccttcctccacctccaccccaaaCATACTTGTGGACAGTCACGTTTGCACACCTGCCACAGGGGCTGCcgtgcccccccccc i papAnu2.chr1 I 29 C 0 s chlSab2.chr25 82721196 501 + 85787240 TCCTTCCCCACGGCCCGGCACCCTGCAGGGCT--CCACCA-GGACATCACTGCGGAGGGTTCCTCTGTGAGAAACGGCCCTACTG-AGTGCCGTCATCAGCCTTAGGACCGCGAATCCCTCGGTGCTCAGCAGGGTGGAAAGGCGGGGGCCCTGATGCCCATGGCAGCGTGACCCACGCCTGCTCGCTGTGGGG----------GAAGCCTGGCTCTTCTGCCTTCCGTT--CCCTCACCCTGTGCCCCTCTGCTCCACAACCAAGGATCCTGTGAACTGTTCAGCGCCTGTTGAGGGATAAGGTGAGGGTACCCACCCTCATGACCTAGTGGCTTCAGAAGCCCCTTGTGTGAGGTTGG---TGGCCTCCAAGACTCTGGCAGCCTCTCTCAGGGATGT-GGATAAAGCATAGTTTGTCCCTTTGAAAGTGCAGTGGTCGAGGCCCTT------CCTCCACCCCAAACATACTTGTGGACAGTCACATTTGCACACCTGCCACAGGggctgccgtgccccccccca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14435323 470 - 49578535 ----------------------------------TCCCTGGGGATAGCGCC-TGGAGCGTGTCTCTGTGAGTAACTGCCCTTGTGCTGTGCCCTCCTCAGCCTTAAGGCTGTGAATCTCTTGGTGCATAGCAGGGTGGAAAGGCGGGGG-CGGGAGGCG---GACAGCATGACCCACACCTGCTCGCTGT-GGG----------GAAGACTGGCTCCCCCACC-TCCATT--ACCTCACCCCGTGCCCCTCTGCTCAACAACCAAGAGTCCTGTGGACTGTTTGGAGCCTGTGGAAGGATGTGGTGAGGGAGACTACCTCCA--GCCTGGTGGCTACAGAAGCCCCTTGAGTAAGGCTGGTGCTGGTCTGTGAGACTCTGGCGGCCTCTCTCAGGGATGTGGGATCATGC--GGTTTGTCTCATTCAAAGCCCAGTGGGTGAGGCCCATTCTCCAACCCCACCCCAAACATACTTGTGGACAGTCACGTTTGCACACCTGCCACAGGGTCTGCCATGCCCCTCCTCC i calJac3.chr19 C 0 C 0 s mm10.chr1 178918299 374 + 195471971 ACTTTCCTCAGTGTCCTG-ATACCAGAGACCT--TGGCTGAGGACGTAACCCCC---------------AGAGACT-TTCTACTC-GATGCCA-------------------------------------------GGAGA---------------------------------------TACTCGCTGTGGAGGTGCCAGGCAGAAAGCTGGTCCTTGCTTCCTCCATTTACCCTTATCTC-TGCCTTCACGCT---------------------GCCATTCAAAGGCT---------------GAGTCTCCCAACCCTTCTGACCTAGTAGCTACAGACGCCTAT-ATATGGAGCTGG---TGGCCTCCAAGACCCTGGAAACTGCCCTCAGGGACATAGGG-------CACTTTGTCTCATCGAAAGTGGGATGGGAGATAGCCTTTCTCCATTCCTACCCCAAACACATTGGT-GACAGTTATA--GACACACCTGCAGTGGGTCCTGCAGTGCCTCTCCCCA i mm10.chr1 C 0 I 50 e canFam3.chr7 36508000 368 + 80974532 I a score=965555.000000 s hg38.chr1_KI270759v1_alt 387533 349 + 425601 -----------CACACACCATGATGCCTGAAATGCGTGATTTTGGAGAAAGTCTTTGCCAtttctttttttcc-ttttttt---------------------gagacagtcttactctatcgcccaggctggagtgcaatggcgtgatcttgccaaactgcaacctctgcttcctatgttcaagtgattctcctgcttcagcctcctgagtagctgggattacaagcgtgcaccaccgtgcctggctaatttttctatctttggtagagacaaggttttaccatgttgaccaggctggtctcgaactcctgacctcaagtgatccgcccgtctcagcctcccaa--agtgctgggattacaggcgtgagccaccacacccagtc s panTro4.chr1 225145764 349 + 228333871 -----------cacataccatgatgcctgaaatgcatgattttggagaaagtctttgccatttctttttttcc-ttttttt---------------------gagacagtcttactctatcgcccaggctggagtgcaatggcgtgatcttgccaaactgcaacctctgcttcctatgttcaagtgattctcctgcttcagcctcctgagtagctgggattacaagcgtgcaccaccatgcctggctaatttttctatctttagtagagacaaggttttaccatgttgaccaggctggtctcgaactcctgacctcaagtgatccgcccgtctcagcctcgcaa--agtgctgggattacaggcgtgagccaccacgcccagtc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226516311 350 - 229942017 -----------CACATACCATGATGCCTGAAATGCATGATTTTGGAGAAAGTCTTTGCCAtttctttttttcctttttttt---------------------gagacagtcttactctgtcgcccaggctggagtgcaatggcgtgatcttgccaaactgcaacctctgcttcttatgttcaagtgattctcctgcttcagcctcctgagtagctgggattacaagcatgcaccaccatgcctggctaatttttctatttttagtagagtcaaggttttaccatgttgaccaggctggtctcgaactcctgacctcaagtgatccgcccgtctcagcctcccaa--agtgctgggattacaggcatgagccaccacacccagtc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140407585 348 - 143122389 -----------cacataccatgatgcctgaaatgcatgattttggagaaaggctttgccatttctttttttcc-ttttttt---------------------gagacagtctcactctgtcgcccaggctggagtgcaatggcgtgatcttgccaaactgcaacctctgcttc-tatgttcaagcgattctcctgcttcagcctcctgagtagctgggattacaagtgtgcaccaccatgcccggctaatttttctatctttagtagagacaaggttttaccacattgaccaggctggtctcaaactcctgacctcaagtgatccgcccgtctcagcctcccaa--agtgctgggattacaggcgtgagccaccacgcccaggc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17109956 376 - 229590362 -----acactgcacataccatggtacctgaaatgcatgattttggagacagtctttgccacttctcttttttt-ttttttttttttttttttttgagagagagagagagactcactctatcgcccaggctggagtgcgatggtgtgatcttgcctcactgcaacctctgcttcccatgttcaagcgattctcctgcttcagcctcctgagtagctgggatgacaggcatgcaccaccatgtctggctactttttctatctttagtagagacgaggtttcaccatgttggccaggctggtctcaaactcttgacctcaagtgattcacccgtctcagcctcccaa--agtcctgggattacaggcatgagccactacacccaggc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223873912 362 - 227556264 -----acactgcacataccatggtacctgaaatgcatgattttggagacagtttttgccatttctcttttttt-tttttttttt--------------gagagagagagactcactctatcgcccaggctggagtgcgatggtgtgatcttgcctcactgcaacctctgcttcccatgttcaagcgattctcctgcttcagcctcctgagtagctgggatgacaggcatgcaccaccatgtctggctactttttctatctttagtagagacgaggtttcaccatgttggccaggctggtctcaaactcttgacctcaagtgattcacccgtctcagcctcccga--agtcctgggattacaggcatgagccactacacccaggc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16919325 379 - 220367699 -cccaacaccGCACATACCATGGTACCTGAAATGCATGATTTTGGAGACAGTCTttgccatttctcttttttt-tttttttttt-tttttttgagagagagagagagagactcactctatcgcccaggctggagtgcaatggtgtgatcttgcctcactgcaacctctgcttcccatgttcaagcgattctcctgcttcagcctcctgagtagctgggatgacaggcatgcaccaccatgtctggctactttttctatctttagtagagacgaggtttcaccatgttggccaggctgatctcaaactcttgacctcaagtgattcacccgtctcagcctcccaa--agtcctgggattacaggcataagccactacacccaggc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82721697 376 + 85787240 cccccccaccgcacataccatggagcctgaaatgcatgattttggacacagtctttgccatttctcttttttt-tttttttttg-------agagagagagagagagagactcactctgtcgcccaggctggagtgacatggtgtgatcttgcctcactgcaacctctgcttcccatgttcaagcgattctcctgcttcagcctcctgagtagctgggatgacaggcatgcgccaccatgtctggctactttttctatctttagtagagacaaggtttcaccatgttggccaggctggtctcaaactcttgacctcaagtgattcacccatctcagcctcccaatcacgcctgggattacaggcgtgagccactacacccaggg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14435793 356 - 49578535 -------CCCCAACAAACCATG-TACCCAAAATGTATGATTTTGGAGAAAGCCTTTGCCAtttctcttttttc-ttttattttgttttt-------------ggaatggagtctcactattgcccaggctggagcgcaatggtgtgatcttatctcactgcaacctccacctcccaagttcaagcgattctcc----ttagcctcacaattagctggggttccaggcgtgtgccaccaagcctggctaattttcatatttttagtagagacgaggtttcaccatgttggccaggctagtctcgaactcctgacctcaagtgatctgcccgtctcagcctcccaa--agtgctgggattacaggcatgagccaccacgcccagGC i calJac3.chr19 C 0 C 0 e mm10.chr1 178918673 50 + 195471971 I e canFam3.chr7 36508000 368 + 80974532 I a score=13572.000000 s hg38.chr1_KI270759v1_alt 387882 5 + 425601 AGTCT s panTro4.chr1 225146113 5 + 228333871 agtct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226516661 4 - 229942017 AGTC- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140407933 5 - 143122389 agtct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17110332 5 - 229590362 agtct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223874274 5 - 227556264 agtct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16919704 5 - 220367699 agtct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82722073 5 + 85787240 agtct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14436149 5 - 49578535 AGTCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178918723 5 + 195471971 GGACT i mm10.chr1 I 50 C 0 e canFam3.chr7 36508000 368 + 80974532 I a score=798927.000000 s hg38.chr1_KI270759v1_alt 387887 232 + 425601 TTGTCATTTTTAAGAATCTCCTATCAAAAG----GCACGTACTCCAGAATAATTAATAT----ATAAAGCCCACAGACTTGTTAATTGGAGTCTTGGGT-GGCACATGACAG-TAAGTTATGATGGGCAAGGAGAAGAGGACCCGGGTCAGAGCTGGTGGCCCTGGAGGTCTTGGGGTAGGAGAAATGAAAGGATGGTAA---GGAGAGAAAAAG-ACAGACAGAGGCAAAAGTTCCCAAGAACAA s panTro4.chr1 225146118 232 + 228333871 ttgccatttttaagaatctcctatcaaaag----gcacgtactccagaataattaatat----ataaagccCACAGACTTGTTAATTGGAGTCTTGGGT-GGCACATGACAG-TAAGTTATGATGGGCAAGGAGAAGAGGACCCAGGTCAGAGCTGGTGGCCCTGGAGGTCTTGGGGTAGGTGAAATGAAAGGATGGTAA---GGAGAGAAAAAG-ACAGACAGAGGCAAAAGTTCCCAAGAGCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226516665 231 - 229942017 -TGTCATTTTTAAGAATCTCCTATCAAAAG----GCACGTACTCCAGAATAATTAATAT----ATAAAGCCCACAGACTTGTTAACTGGAGTTTTGGGT-GGCACATGACAG-TAAGTTATGATGGGCAAGGGGAAGAGGACCCAGGTCAGAGCTGGTGGCCCTGGAGGTCTTGGGGTAGGTGAAATGAAAAGATGGTAA---GGAGAGAAAAAG-ACAGACAGAGGCAAAAGTTCCCAAGAACAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140407938 228 - 143122389 ttgccatttttaagaatctcctatcaaaag----gcacgtacgccagaataattaatat----ataaagccCACAGTCTTGTTAATTGGAATTTTGGGT-GGCACGTGACAG-TGAGTTATGATGGGCAAAGAGAAGAGGACCCAGGTCAGAGCTGGTGGCCCTGGAGGTCTTGGGGTAGGTGAAATGAAATGATGGTAA---GGAGAGAAAA-----AGACAGAGGCAAAAGTTCCTAAGAACAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17110337 228 - 229590362 ttgccatttttaagaatctcctatcaaaag----gcacatactccagaagagctaatat----ataaagccCACTGACTTGTTAATTAGAGTTTTGGGT-GGCACGTGACAG-TCAGTTATGATGGGCAAGGAGAAGAGGGCCCAGGTCACAGCTGGTGGCCCTGGAGGTCTTGGGGTAGGTGAAATGAAAGGATGGTAA---GGAGAGAAAA-----AGACAGAGGCAAAAGGTACCAAGAATAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223874279 228 - 227556264 ttgccatttttaagaatctcctatcaaaag----gcacatactccagaagagctaatat----ataaagccCACTGACTTGTTAATTAGAGTTTTGGGT-GGCACGTGACAG-TCAGTTATGATGGGCAAGGAGAAGAGGGCCCAGGTCACAGCTGGTGGCCCTGGAGGTCTTGGGGTAGGTGAAATGAAAGGATGGTAA---GGAGAGAAAA-----AGACAGAGGCAAAAGGTACCAAGAATAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16919709 228 - 220367699 ttgctatttttaagAATCTCCTATCAAAAG----GCACATACTCCAGAAGAGCTAATAT----ATAAAGCCCACCGACTTGTTAATTAGAGTTTTGGGT-GGCACGTGACAG-TCAGTTATGATGGGCAAGGAGAAGAGGACCCAGGTCACAGCTGGTGGCCCTGGAGGTCTTGGGGTAGGTGAAATGAAAGGATGGtaa---ggagagaaaa-----agacagaggcAAAAGGTACCAAGAACAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82722078 227 + 85787240 ttgccatttttaagaatctcctatcaaaag----gcacatactccagaagaactaatat----agaaagcccactgacttgttaatgaaagtttt-ggt-ggcacgtgacag-tcagttatgatgggcaaggagaagaggacccaggTCACAGCTGGTGGCCCTGGAGGTCTTGGGGTAGGTGAAATGAAAGGATGGTAA---GGAGAGAAAA-----AGACAGAGGCAAAAGGTACCAAGAACAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14436154 227 - 49578535 TTGCCA-TTTTAAGAATCTCCTATCAAAAG----GCACATACTCCAGCAGAACTAATGT----ATAAAGCCCACTGCCTTATTACTTGGAGTTTTGGGT-GGCACGTGACAGTTAAGTTATGATGGACAAGGAGAAGAGGACCCAGGTCAGAGCTGGTGGCCCTGGAAGTCATGGGATAGGTG-AATGAAAGGATGGTAA---GGGGAGAAAA-----AGACAGAGGCAAGAAGTACCAGGAACAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178918728 226 + 195471971 TGGCCATCTCCAGAAATATGGGGTCAGAAG----GTACATATGCCC-AACACCTCATGC----CTGAG--CTACTAATATATCCCTTGGAATTTGGGGTAGGCATGTGATAG-TAAGTTATGTTGGGCAAAAAGAAGA---CCAAGGTCAGAGAGGGTGGCCC-GGATACCATGGAGCAGGCGAATTTAAAAGACAGAGA---GAAGAAAGTGGGTAGAGACAGAGGCATG-GGTACTAAGAATAA i mm10.chr1 C 0 C 0 s canFam3.chr7 36508368 231 + 80974532 TTGCCATCTCCAGGAATCTCCTGTCAAAAGATATGTAAATAGTCCAGAAGTTACAATATGGTGATAAAGGCCACTGACATATGAATTGGAGTTTGGGGT-GACAAGGGACAA-GAAGTCATGATGGGT---GAGAAGAGGATCCAGGCCAGAGCTGGTGGCCCTGGTAGCCATGGGTCAGGTGAGGTGAACGGGCAACAAATTAGAGGCCCAG---ACAGACAGAAGGAAG-------GAGGACAA i canFam3.chr7 I 368 C 0 a score=560260.000000 s hg38.chr1_KI270759v1_alt 388119 233 + 425601 CTGAAGCTACT-TGAGAATTTTGCCTGGAATCATCTCTGCTCATAAGTGGCTTCCAAAGAAATTACCCCTGCTCATCCTT-----TAAGGGCTT--------------AAAAAAAAATAAATGAAAT----TTACGCAGAACCCCACGTGCAATTCTG---TGGCTTGGTTGAAGCCAGGGCGG-CCGGGTTCCTGCCCTCCTG-------GCCTGT-CTCTCCCCTCCCGCTGCC--CTTCTGTGCAACACTAGGCTCTTCACAT----GCTCT s panTro4.chr1 225146350 232 + 228333871 CTGAAGCTACT-TGAGAATTTTGCCTGGAATCATCTCTGCTCTTAAGTGGCTTCCAAAGAAATTACCCCTGCTCATTCTT-----TAAGGGCTT---------------AAAAAAAATAAATGAAAT----TTACGCAGAACCCCACGTGCAATTCTG---TGGCTTGGTTGAAGCCAGGGCGG-CCGGGTTCCTGCCCTCCTG-------GCCTGT-CTCTCCCCTCCCGCTGCC--CTTCTGTGCAACACTAGGCTCTTCACAT----GCTCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226516896 233 - 229942017 CTGAAGCTACT-TGAGAATTTTGCCTGGAATCATCTCTGCTCTTAAGTGGCTTCCAAAGAAATTACCCCTGCTCATTCTT-----TAAGGGCTT--------------AAAAAAAAATAAACGAAAT----GTACGCAGAGCCCCACGTGCAATTCTA---TGGCTTGGCTGAAGCCAGGGCGG-CCAGGTTCCTGCCCTCCTG-------GCCTGT-TTGTACCCTCCCGCTGCC--CTTGTGTGCAACACCAGGCTCTTCACAT----GCTCT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140408166 231 - 143122389 CTGAAGCTACT-CGAGAATTTTGCCTGGAATCATCTCTGCTCTTAAGC-GCTTCCAAAGAAATTACCCCTGCTCATTCTT-----TAAGGGCTT---------------AAAAAAAATAAA-GAAAC----TTACGCAGAACCCCACGTGCAATTCTG---TGGCTTGGTTGAAGCCAGGGTGGCCCGGGTTCCGGCCCTCCTG-------GCCTGT-CTCTGCCCTCCCGCTGCC--CTTCTGTGCAACACTAGGCTCTTCACGT----GCTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17110565 239 - 229590362 CTGAAGCTACT-TGAGAATTTTGCCTGGAATCATCTCTGCTCTTAAGTGGCTTCCAAAGAAATTGCCCCTGCTCATTCTTTAGTCTAAGGGCTT---------------AAAAAAACGAAATGAAAC----TTACGCAGAGCCCCACATGCAATTCTA---TGCCTTGGCTGAAGCCAGGACGGCCTGGGTTCCTGCCCTCCTG-------GCCTGCCCTCTGCCCTCTCACTGCC--CTTCTGTGCAACACTAGGCTCTTCACAC----GCTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223874507 239 - 227556264 CTGAAGCTACT-TGAGAATTTTGCCTGGAATCATCTCTGCTCTTAAGTGGCTTCCAAAGAAATTGCCCCTGCTCATTCTTTAGTCTAAGGGCTT---------------AAAAAAACGAAATGAAAC----TTACGCAGAGCCCCACATGCAATTCTA---TGCCTTGGCTGAAGCCAGGGCGGCCCGGGTTCCTGCCCTCCTG-------GCCTGCCCTCTGCCCTCTCACTGCC--CTTCTGTGCAACACTAGGCTCTTCACAC----GCTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16919937 239 - 220367699 CTGAAGCTACT-TGAGAATTTTGCCTGGAATCATCTCTGCTCTTAAGTGGCTTCCAAAGAAATTGCCCCTGCTCATTCTTTAGTCTAAGGGCTT---------------aaaaaaaCGAAATGAAAC----TTACGCAGAGCCCCACATGCAATTCTA---TGCCTTGGCTGAAGCCAGGGCGGCCCGGGTTCCTGCCCTCCTG-------GCCTGTCCTCTGCCCTCTCACTGCC--CTTCTGTGCAACGTTAGGCTCTTCACAC----GCTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82722305 239 + 85787240 CTGAAGCTACT-TGAAAATTTTGCCTGGAATCATCTCTGCTCTTAAGTGGCTTCCAAAGAAATCACCCCTGCTCATTCTTTAGTCTAAGGGCTT---------------AAAAAAATGAAATGAAAC----TTACACAGAGCCCCACATGCAATTCTA---TGCCTTGGCTGAAGCCAGGGCGGCCCGGGTTCCTGCCCTCCTG-------GCCTGCCCTCTGCCCTCTCACTGCC--CTTCTGTGCAACACTAGGCTCTTCACAC----GCTCT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178918954 243 + 195471971 -TATAGATGCCATGAGAATTTTATCTGAAAT----GTCATTTTTCATTAGATACTAAAGAAAGGGTCCCTATAAGTTCTTTAGTGCAAGAACTTTTGATTTTTTTTCTTAATAAAATCAAATCAATT-------------GCCCTGTGTACACTTCTGCACTCCTTTGAGTGAGGGCAGCAGAA-CAGAAT----GCCCTGCTG-------GCCTGGCCTTGCCTGGATATCTACCATCTTCCATACACAGCCAGGCTCTGCAATTGAGAGCT-- i mm10.chr1 C 0 C 0 s canFam3.chr7 36508599 217 + 80974532 TGTGAGCTATT-GAAAAAATTCTCCCAAATTCATCTCTGCTCTT----------CACAGAAATTTCCCCTACTTGTCCCTGAGCATAAGGACAC------------------ATTTCTTAATGAGGCCGTCTCCCACAGAGCCC-GGGTGCGG-TCTG---TCCTTTGGCCGAAGTGAGGGTGGTGTGGGGTCCTGCCCTCTTGCCCCCCAACCTGACCTTCACTGTCCTGTGGCC--CTTCCGTGGAGCCCT---------------------- i canFam3.chr7 C 0 C 0 e calJac3.chr19 14436381 0 - 49578535 C a score=4602299.000000 s hg38.chr1_KI270759v1_alt 388352 1501 + 425601 CAGAAGCCAGGTCCCTGCAGGG-ATCCGTGCCCGCAGCATATGTGGAAGTAAAAGATGGGGTGAGAC--ACAGATGTAGGG--CTTCCCCTTTC--CT---ACTGCTCCAGCAACTGCCCCACAGGCTTGTTCTCT--GTCATGGGGTGGCTTCTTCCTGTTCTCCCACCACAGGCGA---------------------GCACA---AACTCTGGAATGTT-----CCAAATGTAAGGGCTGTGGTC-AGTGAACATTATAAACCATTCCTCTTCCTAGAATCAAAGAAATCCACCTTAAGGGATGGTGTAGTTATGCAGATGTAGTTT---------------TATGATATAGACAGCC---CCATC-CGCTCCCCTCATCACAGATCACAGAACTTGGCC---ATGGGGATGTTAGGCTCTAAGCATGGTAGGGAATCATCGTGGCTGTCAGTACCTTGACATCT-TTATTTGCCTGGGGGGGGGGTATGCTTCAGTCTTTGATACGCTTTG-----ACTCTGCTTTA---CTTCACCCCTCA-----ATCTCGGTGACAGCACTTGGAGCAGA------------ACCCCA---TTTAAGACAAGTTGAAAAGGAAGAGCCATTCCGTGTAACGTAGCAGCTTCTGTGTCTTATGGCCAGGGCCAAGGGCATTGAAACGTATTGATGAGAG----TAAAAATAAC-AAGCA------------------------------GGAAA--------GCATC--TGCCGGCCTTCCCAGTACCTGGTTAATGAACTCTTGTTATTCTAATCCACGCAGCCTCGG-TCTTCAAAGTCCAGATGACTGTGTGGCATCGGCTGCGTGGC-CACGTGTGTTT-CAGTGTCCCAC------AGTGCTTT--CATGGACTCAAATTTAGTGCCTTGCGTCTACCAGTCCATTTCATTATTTCCGTGGCTTTCACAGG----T-TTTTGTTTTTTTCCCCAAGACT--TTTA-TTGTTTGGTTTGGC---------GGTTACAGTGGAGTAAAGAG--GAAGAACAATGATGGAAAAACAAACGTGTGAAGTG------ACTGCTTGGCGAGCAGGCAGCAGGCTCTGCATACGCCCTTGCTCTGGGCTAAGTGCTCTCGTAAATGCTGTCCTCTAGGAGCCTCTGGTTAGGT-AAGGCTATTGGAGGAAAACAGTGTAAAATTAAAATGCCAGGGCAGGTGCTAGAAAT-GGATTTCATGTGGAATGTCAAGAGCAG---AAGACCTTTGTGATGAGCTGCTG---------TAGATCCAG-GCTCCATGATGGATGTGGCAGTGGAGATGTGCTGGTTTCAGGTTAGGTGACCTTGTCTGGCTTATTTATGATTATTATTAAGAGAAACGGTGGCTGTCAGACATGGTCAGCATAAATCAAAAGCAACTTCTTTAAGAGAAGCTATAAAAC-TCCTCCAAGGAAATTCCTAACTAGATGGCTAGAGTT----TACAATTATGAGAGGTG-------TTTGGAACCAGAGAGGAGAC--------ATCTTTTGTCTGAGATGGCTTTTGAATTTGGAATA-TTTTAATGC-----TTATTTCCTTAGT--AAAAATGAACTAGA-----ATTATT----GGGAAAATAACCTTGACCTCTCTGATTCC-TTGGTAGTACATGTAACAGCAGAAACGACCAAATATCACCGTGGT s panTro4.chr1 225146582 1497 + 228333871 CAGAAGCCAGGTCCCTGTAGGG-ATCCGTGCCCGCAGCATATCTGGAAGTAAAAGATGGGGTGAGAC--ACAGATGTAGGG--CTTCCCCTTTC--CT---ACTGCTCCAGCAACTGCCCCACAGGCTTGTTCTCT--GTCATGGGGTGGCTTCTTCCTGTTCTCCCACCACAGGCGA---------------------GCACA---AACTCTGGAATGTT-----CCAAATGTAAGGGCTGTGGTC-AGTGAACATTATAAACCATTCCTCTTCCTAGAATCAAAGAAATCCACCTTAAGGGATGGTGTAGTTATACAGATGTAGTTT---------------TATGACATAGACAGCC---CCATC-CGCTCACCTCATCACAGATCACAGAACTTGGCC---ATGGGGATGTTAGGCTCTAAGCATGGTAGGGAATCATCGTGGCTGTCAGTACCTTGACATCT-TTATTTGCT----GGGGGGGTATGCTTCAGTCTTTGATACGCTTTG-----ACTCTGCTTTA---CTTCACCCCTCA-----ATCTCGGTGACAGCACTTGGAGCAGA------------ACCCCA---TTTAAGACAAGTTGAAAAGGAAGAGCCATTCCGTGTAACATAGCAGCTGCTGTGTCTTATGGTCAGGGCCAAGGGCATTGAAACGTATTGATGAGAG----TAAAAATAAC-AAGCA------------------------------GGAAA--------GCATC--TGCCGGCCTTCCCAGTACCTGGTTAATGAACTCTTGTTATTCTAATCCACGCAGCCTCGG-TCTTCAAAGTCCAGATGACTGTGTGGCATCGGCCGCGTGGC-CACGTGTGTTT-CAGTGTCCCAC------AGTGCTTT--CATGGACTCAAATTTAGTGCCTTGCGTCTACCAGTCCATTTCATTATTTCCGTGGCTTTCACAGG----T-TTTTGTTTTTTTTCCCAAGACT--TTTA-TTTTTTGGTTTGGC---------GGTTACACTAGAGTAAAGAG--GAAGAACAATGATGGAAAAACAAACGTGTGAAGTG------ACTGCTTGGCGAGCAGGCAGCAGGCTCTGCATACGCCCTTGCTCTGGGCTAAGTGCTTTCGTAAATGCTGTCCTCTAGGAGCCTCTGGTTAGGT-AAGGCTATTGGAGGAAAACAGTGTAAAATTAAAATGCCAGGGCAGGTGCTAGAAAT-GGATTTCATGTGGAATGTCAAGAGCAG---AAGACCTTTGTGATGAGCTGCTG---------TAGATCCAG-GCTCCATGATGGATGTGGCAGTGGAGATGTGCTGGTTTCAGGTTAGGTGACCTTGTCTTGCTTATTTATGATTATTATTAAGAGAAACGGTGGCTGTCAGACATGATCAGCATAAATCAAAAGCAACTTCTTTAAGAGAAGCTATAAAAC-TCCTCCAAGGAAATTCCTAACTAGATGGCTAGAGTT----TACAATTATGAGAGGTG-------TTTGGAACCAGAGAGGAGAC--------ATCTTTTGTCTGAGATGGCTTTTGAATTTGGAAAA-TTTTAATGC-----TTATTTCCTTAGT--AAAAATGAACTAGA-----ATTATT----GGGAAAATAACCTTGACCTCTCTGATTCC-TTGGTAGTACATGTAACAGCAGAAACGACCAAATATTACTGTGGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226517129 1479 - 229942017 CAGAAGCCAGGTCCCTGCAGGG-GTCCATGCCCGCAGCATATCTGGAAGTAAAAGATGGGGTGAGAC--ACAGATGTAGGG--CTTCCCCTTTC--CT---ACTGCTCCAGCAACTGCCCCACAGGCTTGCTCTCT--GTCATGGGGTGGCTTCTTCCTGTTCTCCCACCACAGGCGA---------------------GCACA---AACTCTGGAATGTT-----CCAAATGTAAGGGCTGTGGTC-AGTGAACATTATAAACCATTCCTCTTCCTAGAATCAAAGAAATCCACCTTAAGGGACGGTGTAGCTATGCAGATGTAGTTT---------------TATGATACAGACAGCC---CCATC-CGCTCACCTCATCACAGATCACAGAACTTGGCC---ATGGGGATGTTAGGCTCTGAGCATGGTAGGGAATCATCGTGGCTGTCAGTTCCTTGACGTCT-TTATTTGCC---AGGTGGGGTATCCTTCAGTCTTTGATACGCTTTG-----ACTCTGCTTCA---CTTCACCCCTCA-----ATCTCGGCGACAGCACTTGGAGCAGA------------ACCCCA---TTTAAGACAAGTTGAAAAGGAAGAGCCATTCCATGTAACATAGCAGCTGCTGTGTCTTACGGCCAGGGCCAAGGGCATTGAAACGTATTGATGATAG----TAAAAATAAC-AAGCA------------------------------GGAAA--------GCATC--TGCCGGCCTTCCCAGTACCTGGTTAATGGACTCTTGTTATTCTCATCCACGCAGCCTCGG-TCTTCAAAGTCCAGATGACTGTGTGGCACTGGCCACATGGC-CACGTGTGTTT-CAGTGTCCCAC------AGTGCTTT--CATGGACTCGAAGTTAGTGCCTTGCGTCTACCAGTCCATTTCATTATTTCCGTGGCTTTCACAGG----T-TTTTGGGTTTTTTTTCAAGACT--TTTG-TTTTTTGGTTTGGC---------GGTTACACTGGAGTAAAGAG--GAAGAACAATGATGAAAAAACACAGGTGTGAAGTG------ACTGCTTGGCGAGCAGGCAGCAGGCTCTGTGTATGCCCTTGCTCTGGGCTAAGTACTTTCGTAAATGCTGTCCTCTAGGAGCCTCTGGTTAGGT-AAGGCTATTGGAGGAAAACGGTGTAAAATTGAAATGCCAGGGCAGGTGCTAGAAATGGGATTTCACGTGGAGTGCCAAGAGCAG---AAGACCTTTGTGATGAGCTGCTG---------TAGATCCAG-GCTCCATGATGGATGTGGCAGTGGAGATGTGCTCGTTTCAGGTTAGGTGATCTTGTCTTGCTTATTTATGATTGTTATTAAGAGAAACGGTGGCTGTCAGACATGATCAGCATAAA-------------------------CTGTAAAAC-TCCTCCAAGGAAATTCCTAACTAGATGGCTAGAGTTAATATACAAGTATGAGAAGTG-------TTTGGAACCAGAGAGGAGGC--------GTCTTTTGTCTGAGATGGCTTTTGAATTTGGAAAATTTTTAATGC-----TTATTTCCTTAGT--AAAAATGAACTAGA-----ATTATT----GGGAAAATAACCTTAACCTCTCTGGTTCC-TTTGTAGTACATGTAACAGCAGAAACGACCAAACATCGCTGTGGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140408397 1493 - 143122389 CAGAAGCCAGGTCCCTGCAGGG-ATCCGTGCCCGCAGCATATCTGGAAGTAAAAGATGGGGCGAGAC--ACAGATGTAGGG--CCTCCCCTTTC--CT---ACTGCTCCGGCAACTGCCCCACAGGCTTGTTCTCT--GTCATGGGGTGGCTTCTTCCTGTTCTCCCACCACAGATGA---------------------GCACA---AACTCTGGAATGTT-----CCAAATGTAAGGGCTGTGGTC-AGTGAACATTATAAACCATTCATCTTCCTAGAATCAAAGAAATCCACCTTAAGGGACGGTGTAGTTATGCAGATGTAGTTT---------------TATAATATGGACAGCC---CCATC-CGCTCACCTCATCACAGGTCACAGAACTTGACC---GTGGGGATGTTACACTCTAAGCATGGTAGGGAATCATCGTGGCTGTCAGTACCTTGACGTCT-TTATTTGCC---AGGTGGGGTATGCTTCAGTTTTTGATACGCTTTG-----ACTCTGCTTCA---CTTCACCCCTCA-----ATCTCGGCAACAGCACTTGGAGCAGA------------ACCCCG---TTTAAGACAAGTTGAAAAGGAAGAGCCGTTCCGT-TAACATAGTAGCTACTGTGTCTTATGGCCAGGGCCAAGGGCATTGAAACGTATTGACAACAG----TAAAAATAAC-AAGCA------------------------------GGACA--------GCATC--TGCCGGCCTTCCCAGTTTTTGGTTCATGAACACTTGTTATTCTAATCCACGCAGCCTGGG-TCTTCAAAGTCCAGATGACTGTGTGACATTGGCCGCATGGC-CACGTGTGTTT-CAGTGTCCCAC------AGTGTTTT--CATGGACTCGAATTTAGTGCCTTGCACCTACCAGTCCATTTCATGGTTTCCGTGGCTTTCACGGG----T--------TTTTTTTTCAAGACT--TTTATTTTTTTGGTTTGGC---------GGTTACACTGGAGGAAAGAG--GAAGAAAAATGATGAAAAAAGAAACGTGTGAAGTA------ACTGCTTGGCGAGCAGGCAGCAGGCTCTGCATACACCCTTGCTCTGGGCTGAGTGCTTTCGTAAGTGCTGTCCTCTGGGAGCCTCTGATTAGATAAAGGCTATCGGAGGACAACGGTGTAAAATTGAAATGCCAGGGCAGGTGCTAGAAATGGGATTTCCTGTGGAGTGCCAAGAGCAG---AAGACCTTTGTGATGAGCTGCCG---------TAGGTCCAG-GCTCCATGATGGATGTGGCAGTGGAGATGTGCTCGTTTCAGGTTAGGTGACCTTGTCTTGCTTATTTATGATTATTATTAAGAGAAACGGTGGCTGTCAGACATGATTAGCATAAATCAAAAGCAACTTCTTTAAGAGAAGCTATAAAAC-TCCTCCAAGGAAATTCCTAACTAGACGGCTAGAGTT----TACAATTATGAGAGGTG-------TTTGGAACCAGAGAGGAGAC--------ATCTTTTGTCTGAGATGGCTTCTGAATTTGGAAAA-TTTTAATGC-----TTATTTCCTTAGT--AAAAATGAACTAGA-----ATTATT----GGGAAAATAACCTTGACCTCTCTGATTCC-TTTGTAGTACATGTAACAGCAGAAACGACCAAACATCACCGTGGT i nomLeu3.chr5 C 0 I 16 s rheMac3.chr1 17110804 1444 - 229590362 CAGAAGCCAGGTCCCTGCAGGG-ATCAGTGCCCGCAGCATCTTTGGAAGTAAAAGATGGGGTGAGTG--ACAGATGTAGGG--TCTCCCCTTTC--CT---ACTGCTCCAGCAACTGCCCCACAGGCTTGTTCTGTCAGTCATGGGGTGGCTTCTTCCTGTTCTCCCATCACAGGCGA---------------------GCACA---AACTCTGGAATGTTCCAACCCAAATGTAAGGGCTGTGGTC-AGTGAACATTATAAAACAGTCATCTTCCTAGAATCAAAGAAATCCACCTTAAGGGACCATGTAGGTATGCAGATGTAGTTT---------------TATGATATGGACAGCC---CCATC-TGCTCACCTCATCACAGATGACAGAGCTTGGCC---ATGGGGATGTTAGGCTGTAAGCATGGTAGGGAATCATCGTGGCTGTCAGTACCTTGACGTCTATTATTTGCC---GGGTGGGG--TTCTTCAGTCTTTGATGCTCTTTG-----ACTCTGCTTCA---CTTCACCCCTCC-----ATCGCAGAGACAGCACTTGGAGCAGA------------ACCCCA---TTTAAGACAAGTTGAAAAGGCAGAGCCATTCCATGTGACATAGTGGCTGCTGTGTCTTATGGCCAGGGCCAAGGGC-TTGAAACGTATTGATAGTAG----TAAAAATAAC-AAGCA------------------------------GGAAA--------GCAGC--TGCCGGCCTTCCCAGTACCTGGTTAATGAACACTTGTTATTCTAATCCACGCAGGCTTGG-TCTTCAAAGTCCAGACGA-TGTGT------GGCCACATGGC-CACGTATGTTT-CAGTGTCCCAC------AGTGCTTT--CATGCACTCAAATTTACTGTCTTGTTTCTACCAGTCCATTTCATTATTTCCGTGGCTTTCACAGG---TT-TTTTTTTTTTTTTTTCAAGACT--TTTA-TTTTTTGGTTTGGC---------GGTTACACTGGAGTGAAGAG--GAAGAA------------------------AAAAA------ACTGCTTGACGAGCAGGCAGCAGGCTCCGCGTATGCCCTTGCTCTGGGCTAAGTGCTTTCGTAAATGCTGTCCTCTAGGAGTCTCTGGTTAGGT-AAGGCTATTGGAGGAAAACGGTGTAAAATTAAAATGCCAGGGCAGGTGCTAGAAATGGGATTTCACGTGGAGTGCCAAG---AG---AAGACCTTTGTCATGAGCTGCTG---------TAGATCCAG-GCTCCATGATGGATGTGGCAGTGGAGACGTGCTCGTTTCAGGTTAGGTGACCTTGTCTTGCTTATTTATGATTATTATTAAGAGAAACGGTGGCTGTCAGACGTGATCAGCATAAATCAAGAGCAACTTCTTTAAGAGAAGCTATAAAAC-TCCTCCAAGGAGATTCCTAACTAGATGGCTGGAGTT----CACAATTATGAGAGGCG--------TTGGAACCAGAGA-GGGAC--------ATCTTTTGTCTGAGATG--------------------------GC-----TTATTTCCTTAGT--AAAAACGAACTGGA-----ATGATG----GGGAGAATAACCTGGACCTCTCTGATTCC-TTCGTAGGATGTGTAACAGCAGGAACGACCAGACATCACAATGGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223874746 1447 - 227556264 CAGAAGCCAGGTCCCTGCAGGG-ATCAGTGCCCGCAGCATCTTTGGAAGTAAAAGATGGGGTGAGTG--ACAGATGTAGGG--TCTCCCCTTTC--CT---ACTGCTCCAGCAACTGCCCCACAGGCTTGTTCTGTCAGTCATGGGGTGGCTTCTTCCTGTTCTCCCATCACAGGCGA---------------------GCACA---AACTCTGGAATGTTCCAACCCAAATGTAAGGGCTGTGGTC-AGTGAACATTATAAAACAGTCATCTTCCTAGAATCAAAGAAATCCATCTTAAGGGACCATGTAGGTATGCAGATGTAGTTT---------------TATGATATGGACAGCC---CCATC-TGCTCACCTCATCACAGATGACAGAGCTTGGCC---ATGGGGATGTTAGGCTGTAAGCATGGTAGGGAATCATCGTGGCTGTCAGTACCTTGACGTCTATTATTTGCC---AGGTGGGG--TTCTTCAGTCTTTGATGCTCTTTG-----ACTCTGCTTCA---CTTCACCCCTCC-----ATCGCAGAGACAGCACTTGGAGCAGA------------ACCCCA---TTTAAGACAAGTTGAAAAGGCAGAGCCATTCCATGTGACATAGTGGCTGCTGTGTCTTATGGCCAGGGCCAAGGGC-TTGAAACGTATTGATAGTAG----TAAAAATAAC-AAGCA------------------------------GGAAA--------GCAGC--TGCCGGCCTTCCCAGTACATGGTTAATGAACACTTGTTATTCTAATCCACGCAGGCTTGG-TCTTCAAAGTCCAGACGA-TGTGT------GGCCACATGGC-CACGTATGTTT-CAGTGTCCCAC------AGTGCTTT--CATGCACTCAAATTTACTGTCTTGTTTCTACCAGTCCATTTCATTATTTCCGTGGCTTTCACAGGttttt-tttttttttttttttCAAGACT--TTTA-TTTTTTGGTTTGGC---------GGTTACACTGGAGTGAAGAG--GAAGAA------------------------AAAAA------ACTGCTTGACGAGCAGGCAGCAGGCTCCGCGTATGCCCTTGCTCTGGGCTAAGTGCTTTCGTAAATGCTGTCCTCTAGGAGTCTCTGGTTAGGT-AAGGCTATTGGAGGAAAACGGTGTAAAATTAAAATGCCAGGGCAGGTGCTAGAAATGGGATTTCACGTGGAGTGCCAAG---AG---AAGACCTTTGTCATGAGCTGCTG---------TAGATCCAG-GCTCCATGATGGATGTGGCAGTGGAGACGTGCTCGTTTCAGGTTAGGTGACCTTGTCTTGCTTATTTATGATTATTATTAAGAGAAACGGTGGCTGTCAGACGTGATCAGCATAAATCAAGAGCAACTTCTTTAAGAGAAGCTATAAAAC-TCCTCCAAGGAGATTCCTGACTAGATGGCTGGAGTT----CACAATTATGAGAGGCG--------TTGGAACCAGAGA-GGGAC--------ACCTTTTGTCTGAGACG--------------------------GC-----TTATTTCCTTAGT--AAAAACGAACTGGA-----ATGATG----GGGAGAATAACCTGGACCTCTCTGATTCC-TTCGTAGGATGTGTAACAGCAGGAACGACCAGACATCACAATGGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16920176 1445 - 220367699 CAGAAGCCAGGTCCCTGCAGGG-ATCAGTGCCCGCAGCATCTTTGGAAGTAAAAGATGGGGTGAGTG--ACAGATGTAGGG--TCTCCCCTTTC--CT---ACTGCTCCAGCAACTGCCCCACAGGCTTGTTCTGTCAGTCATGGGATGGCTTCTTCCTGTTCTCCCATCACAGGCGA---------------------GCACA---AACTCTGGAATGTTCCAACCCAAATGTTAGGGCTGTGGTC-AGTGAACATTATAAAACATCCATCTTCCTAGAATCAAAGAAATCCACCTTAAGGGACCATGTAGGTATGCAGATGTAGCTT---------------TATGATATGGACAGCC---CCATC-TGCTCACCTCATCACAGATGACAGAGCTTGGTC---ATGGGGATGTTAGGCTGTAAGCATGGTAGGGAATCATCATGGCTGTCAGTACCTTGACGTCTATTGTTTGCC---AGGTGGGGTATACTTCAGTCTTTGATGCTCTTTG-----ACTCTGCTTCA---CTTCACCCCTCC-----ATCGCAGAGACAGCACTTGGAGCAGA------------ACCCCA---TTTAAGACAAGTCGAAAAGGCAGAGCCATTCCATGTAACGTGGCAGCTGCTGTGTCTTATGGCCAGGGCCAAGGGC-TTGAAACGTATTGATAGTAG----TAAAAATAAC-AAGCA------------------------------GGAAA--------GCAGC--TGCCGGCCTTCCCAGTACCTGGTTAATGAACACTTGTTATTCTAACCCACGCAGGCTCGG-TCTTCAAAGTCCAGACGA-CGTGT------GGCCACATGGC-CACGTATGTTT-CAGTGTCCCAC------AGTGCTTT--CATGCACTCAAATTTACTGTCTTGTTTCTACCAGTCCATTTCATTATTTCCGTGGCtttcacagg----t-tttttttttttttttcaagact--ttta-ttttttggtttggc---------GGTTACACTGgagtgaagag--gaagaa------------------------aaaaa------actgcTTGACGAGCAGGCAGCAGGCTCCGCGTATGCCCTTGCTCTGGGCTAAGTGCTTTCGTAAATGCTGTCCTCTAGGAGTCTCTGGTTAGGT-AAGGCTATTGGAGGAAAACAGTGTAAAATTAAAATGCCAGGGCAGGTGCTAGAAATGGGATTTCATGTGGAGTGCCAAG---AG---AAGACCTTTGTCATGAGCTGCTG---------TAGATCCAG-GCTCCATGATGGATGTGGCAGTGGAGATGTGCTCGTTTCAGGTTAGGTGACCTTGTCTTGcttatttatgattattattaagaGAAACGGTGGCTGTCAGACATGATCAGCATAAATCAAGAGCAACTTCTTTAAGAGAAGCTATAAAAC-TCCTCCAAGGAGATTCCTAACTAGATGGCTGGAGTT----CACAATTATGAGAGGCG--------TTGGAACCAGAGA-GGGAC--------GTCTTTTGTCTGAGACG--------------------------GC-----TTATTTCCTTAGT--AAAAACGAACTGGA-----ATGATG----GGGAGAATAACCTGGACCTCTCTGATTCC-TTCGTAGGATGTGTAACAGCAGGAACGACCAGACATCACAATGGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82722544 1442 + 85787240 CAGAAGCCAGGTCCCTGCAGGG-GTCAGTGCCCGCAGCATCTTTGGAAGTAAAAGATGGGGTGAGTG--ACAGATGTAGGG--TCTCCCCTTTC--CT---ACTGCTCCAGCAACTGCCCCACAGGCTTGTTCTCCCAGTCATGGGGTGGATTCTTCCTGTTCTCCCATCACAGGCGA---------------------GCACA---GACTCTGGAATGTTCCAACCCAAACGTAAGGGCTGTGGTC-AGTGAACATTATAAACCATTCATCTTCCTAGAATCAAAGAAATCCACCTTAAGGGACCATGTAGGTATGCAGATGTAGTTT---------------TATGACATGAACAGCC---CCATC-TGCTCACCTCATCACAGATGAGAGAGCTTGGCC---AT-GGGATGTTAGGCTCTAAGCATGGTAGGGAATCATTGTGGCTGTCAGTACCTTGACGTCTGTTATTTGCC---AGGTGGGGTATGCTTCAGTCTTTGATGCTCTTTG-----ACTCTGCTTCG---CTTCACCCCTCC-----ATCGCAGAGACAGCGCTTGGAGCAGA------------ACCCCA---TTTAAGACAAGCCGAAAAGGCAGAG-CATTCCATGTAACATAGCGGCTGCTGTGTCTTATGGCCAGGGCCAAGGGC-TTGAAACGTATTGATAGTAG----TAAAAATAAC-AAGCA------------------------------GGAAA--------GCAGC--TGCCGGCTTTCCCAGTACCTGGTTAATGAACACTTGTTATTCTAATCCACGCAGGCTCGG-TCTTCAAAGTCCAGACGACTGTGT------GGCCACATGGC-CACGTATGTTT-CAGTGTCCCAC------GGTGCTTT--CATGCACTCAAATTTAGTGTCTTGCGTCTACCAGTCCATTTCATTATTTCCGTGGCTTTCACAGG----T-TTGTTTTTTTTTCCTCAAGACT--TTTA-TTTTTTGGTTTGGC---------GGCTACACTGGAGTAAA-----GAAGAA------------------------AAATA------ACTGCTTGGCGAGCAGGCAGCAGGCTCCGCATACGCCCTTGCTCTGGGCTAAGTGCTTTCGTAAATGCTGTTCTCTAGGAGTCTCTGGTTAGGT-AAGGCTATTGGAGGACAACGGCGTAAAATTAAAATGCCAGGGCAGGTGCTAGAAAT-GGATTTCACGTGGAGTGCCAAG---AG---AAGACCTTTGTCATGAGCTGCTG---------TAGATCCGG-GCTCCATGATGGATGTGGCAGTGGAGACGTGCTCGTTTCAGGTTAGGTGACCTTGTCTTGCTTATTTATGATTATTATTAAGAGAAACGGTGGCTGTCAGACATGATCAGCATAAATCAAGAGCAACTTCTTTAAGAGAAGCTATAAAAC-TCCTCCGAGGAGATTCCTAGCTAGATGGCTGGAGTT----TACAATTATGAGAGGCG-------TTTGGAACCAGAGAGGGGAC--------ATCTTTTGTCTGAGACG--------------------------GC-----TTATTTCCTTAGT--AACAATGAACTGGA-----ATGATG----GGGAGGATAACCTGGACCTCTCTGATTCC-TTCGTGGGATGTGTAACAGCAGGAACGACCAAACATCACAATGGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14436381 1455 - 49578535 CGGATGCCAGGGCCCTGCAGGG-CT-GGTGCCTGCAGCATGCTGGGAAGTAAAGGATGGGGTGAGAC--ACAGATGTGGAG--CCT--------------------------------CCCACAGGCTTGTTCTCTCAGTCACGGGCCTGCTTTTTCCTGTTCTCCCATCACAGGCCA---------------------GCACA---AACTCTGGAATGTTCCAACACAAATCTAAGGGCTGTGGCCAAGTGCACATTGTAAACCATTCATCTTCCTGGAATCAAAGAAACCCACCTCCAGGGACCGTGCAGTTAGGCAGATGTGGTTT---------------TGCGATATAGACAGCC---CGGTC-C-------------------ACAGAACTCAGCT---CTGGGGGTGTTAGGCTCTAAGAGTGGTAGGGAATCATCATGGCTCTCAGTACCTTCACATCT-TTATTTCCC---AGGTGCAGCATGCTTCAGTCTTTGATACACTTTG-----ACTCTGTTTCA---CTTCACCCCTCA-----GTCTCAGCAACAGACCTTAGCGCAGA------------ACACCA---TCTAAGGCAAGTTGAAA------AGCCATTCCGTGTAACCTAGCGGCTGCTGTGTCTTATGGCCAGGGCCCAGGGCACTGAAACGTATTGATAATAG----TAAAAATAAC-AAGCA------------------------------GGAAA--------AAATG--CTCTGGCCTTCCCAGTACCTGGTTAAAGAACACTTGTTCTCAGCATCTACACAGCCTCGG-TCTTCAGAGTCCAGGTGACTGTGCGGCGTTCGCTGCGTGGT-GACGTGTATCT-C--TCTTACAG------AGTGCTTT--TATGCACTCTGACTTAGTGCCTTGAGTCTACTGATCCATTTCATTATTTCAATGGCTTTCACAGT----TGTTTTTTTTTCTTTTTCAAGACT--TTTC-ATTTTTGGTTTGGT---------GGTTACACTGGAGTAAAGGG--GAAGAA-AATGGTGAAAAACCAAACGTGTGAAGTA------ACTGTTTGGTGAGCAGGCAGCAGGCTCTGCGCATGTCCTTGCTCTGGGCTAAGTGCTTTCATGCATGCGGTCCTCCAGGAGCCTCTAGTTAGGT-AAGGCTGGTGGAGAAAAATAGTGTCAAAGGAAAAGGCCAGGGTAGG-GCTAGAAATGGAACCTCACGTGGCGCGCCGAGAGCAG---GAG-CCTTCACGACG-GCTGCTG---------TAGGTCCAGCGCTCCGTGATGGATGCGGCAGTGGAGATGCGCTTGGTTCAGGTTAGGTGACCTTGTCTGGCTTATTTATGATTATTATTAAGAGAAGTGGTGGCTGTCAGACATGATGAGCATAAATCAAAAGCAGCTTCTTTAAGACATGTTATAAAAC-TCCTCCAAGGAAACCCCTAACTACATGGCCAGAGTT----TACAATGACGAGAGACG-------CTGAGAGCTGGAGAGGAGAC--------GTCTTTTATCCGAGATGGCTTTTGAGTTTGGGAAA-TTGTACTGCTTTTGTTATTTCCCCAGT--AAAAATGAATGAGA-----ATGACT----GGGACAATGACCTTGAGCTCTCCGTTTCC-TTTGTAGTCCATGTAAGAGCAGAAACGACTGGACATCGCGATGGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178919197 1579 + 195471971 CTGAATCCTTTACCCTGCATG---TCAATGCCATCAGCCTAGTCAGGATCAAGAGATGGGGTGACAT--GCAGAAACGGGT--CCCTCTCCCCCAGCA---GCTGCTACAGGAACCATCCT-TGGGCCTTTACAACCTGCCGTGGGGTTGCTTTTGCCTGTT-TCCTGCCAGATGTGacacacacacacacacacacacacacaTGGAGCTCTGCAATGGACCAGCCCACA--TAAGGGCTGAGAGC-AATGTCCATCATAAACCATTTGTCTTCCTTGGATCAAAGAATTCAATCTCCGGGGACTACCTAAGC------TTGTGGTTTCCCATCCCCATCTGCCGTGATATAAGAGGTCCATCCATC-TGTGCGGTGCTCTGCAGATCACAGCACAAGGCTTCAGCGAGGACACTCCATTCCGGGCAAGCTCAGGGACTGTTGTGGCTACTGCCACACTGGCATCT-GCACTTCCT---AGCTG--------------------TGCATTTCT-----AATCTGTCTTA---TTTCATCCCT-------GTCTTGG-AACAGGCTTTTCAGAAGACACACACCTCCTGCCCCAGCCCCTAGAAGGAGGTAAAAGTGACAAGCTGCTGAGTGTGTCAGGGCAGGCACTGTGACCTATCCCCCAGGCCAGGGGCCCTGAAATGTACTGATGTTAGTTACTGAAAATAACTAAATACCTT-ATGTATACCAGC-------CTTCATGGAAA--------ATAACTGTGCTGGCCTTCCTAGTACTTGATTGACAGGCA-TTGTCATTACTGTCTACTCCGTGTTGG-TCTTCAAAGCCCGGAGAACAGTATAGCATTTGCTTCAAGGCTCGCTCACGCTT-TCCTGGTGGAG------CGAGCTTC----TGTTTTCTAATTTAATGTGTCG---CTACCCAGCTACTTTATT----------CTTCCACCG-----T-CTTCAACTTTCTAGTCAAGGCTCCTTAA-TGTGTCGGTTTGGAGTGAAGCAGGGAAGCCACGGAATGGATGG--GGAGAG----------AGAACAACAGTGTGGAGAATGACAGACAGCTCGGAGAG-AGGTAGCAGGCTCCACACATGTCCTTGCTCAGGGCTGACTCCAGTCATAACTGCTGCCCTCTGAGGGACTCCTCTTAG---AAGGCTATTGAAGGAAAATGGTGTGTCATAAAAATGCCAGGGAAGGTGCTGGAGACGGGATTTAATATGGAGTGTCCCGAGCAT---CAGACCTCTGTGCGCAGCCACCGCAGCCACCATAGACCGAGGGCTCTGTGATAGATACCGCAGGGAAGACTTGCTCATTTCAGGTTAGGTGACCTTGTCTGCCTTATTTATGATTATTATTAAGAGAAATGCTGGCCGTCAGACGTGATCAACATAAATCACAAACAACTTCTTTAAAAGAAGCCATAAGGCTTCCTCAAAGGAATTTCCTACCTAGCCGGCC--AGTC----CTCAGTCACAGGAGACGTCTGGGATTTAGAACTGCAGGGTAGGC----AGTTATGTTTCATCTGTGATT-GTTTTGCGTTTGGAGAA-TTGTAATGATTTAGTTGCTTTCTGACT--GAAAAAGAATTATA-----ATTGTGTCACTGGGAAATAGCCATGAGCTCTCAGATTCTGTGTGATGCATATGTAACAGCAGAGATGATCACACATCTGGATGTC i mm10.chr1 C 0 C 0 s canFam3.chr7 36508816 1493 + 80974532 CAGAAACCACTACCCTATGGAACAGCGGTGCTACCTACACATCAGGAATTAAAAGATGGGATGAGTCCTCCAAACGTGGGGGTTCTCCCCTTTC--CTGCAGCTGCTCTGGCAACTGCCCCACAGGCTTTTTCTCTCAGCCACAGGGTTGCTTTTCCCTGTTTTCCCAATACAGGCAA---------------------GCACA---AGCTCTGGAATGTTCCAGCCCAA----------TGT-----AATGCACATCATAAACCGTT----TGCCTCAAATCAAAGAAGTCAGCTTCATAAT----TCTAGATGCTAGGCTGTAGCTC---------------TCCCACCT------TC---CCACCGCCCCCCCCCCCCCATTGGTCACAAAGCATGGGA---GTGAG----TTATACTCCAAGCATGTTCAGGAGTCA---TGGCCATGGGC-------CAACT-TGACCTCCC---AGGGGGTGTGTGCTTCAGGCTTTGACCCACTTTGGAAGAACCCCACACCAGGCCCTCAGCCCTCACAGCCCCATCAAGGAAGGACCTGGGAGCGGT------------GCCCGG----GTAAGACGAGTGTAGAATGAAAAGCCATGGACTATAATGTGACAGCTGCTGTGCCCTGT-TTCAGGGCCAAGGGCATTAAAACGTATTGATACCAGTCACTAAGAATAAC-AAGAAAGTTCATCTGAGCCAGAGTCTCTGTTTCGGGGACAGGGGTGGTGGATC--TGCTGGCCCTTCCAGTACCTGGGCGATAAAC-CTCCTTACTATGGTCTACCCACTGTCAGTTCTTCGGAATCCAGATTG--GTGTGATGT-CACGGCGTGAC-ACGGTGTGCTCACGGCAGCCGACCGTTAGAATGTTTTCCCACAAACTCGTATCTAGGGCTTCGTGCCTACCAGTCCATTTTGTT-----------CTTTAAATC----T-CTTTTACTCTTTCTTCAAGACC--TGTG-GTTTTTGGTTTGGC---------CGTTGTGCTGGGGTAAAGAGCTCTGTAA------------------------AAACA------GCTGCTCAGACCGTGGACCGCAGGTTCTCTACCTACCCTTGCCTGGCACTACCTCCTTTCATAAGGGCCATCCTCGAGGC-TCTCCTGTTAGGT-TAGACTATTGGAGGAC-ACGGTATAGAATCAGAGCTCCAGGCTGGGGGCCAGAAAT-------------GGGTGCCAGGAGCAGCATCAGCCTTCTGCAAGCAGCTGGCA---------GAGATCA---GCCTCGCAATGGATGTGGCCGTGGAGGTATGCGCCTTTCAGGTTAGATGACCTTGTGTCGCTTCTTTATGGTTATTATTAAGAGAAATGCTGGCTGTCAAA-ATGATCAGCATAAATCAAATGCCACTTCTTTAAGAGAAGCCATAAAAC-TCCTCAAAGGAAATTCCTAGCTAGATGGCTGGATTA----TACCATTACTGGAGATG-------TTTGAAACTGCAGAGGAGACAGGCAGTTATCTTTTATCGGAGATTGCTTTTGAATTTGGAAAA-TTT-----------TTAATACTTTGGTTGAAAAATGAACTAGAAATCTATCAGG----TGGATGATAGTCTTGAGCTCTCAGAGTGC-CTTGTAATGCATGCCGTATGAGAAACAACCAAATGTCATTAAGGT i canFam3.chr7 C 0 C 0 a score=41845.000000 s hg38.chr1_KI270759v1_alt 389853 23 + 425601 TCCTTCTTGTCTTCTCATTCTTG s panTro4.chr1 225148079 23 + 228333871 TCCTTCTTGTCTTCTCATTCTTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226518608 23 - 229942017 TCCTTATTGTCTTCTCTTTCTTG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17112248 23 - 229590362 TCGTTCTTGTCTTCTCATTCTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223876193 23 - 227556264 TCGTTCTTGTCTTCTCATTCTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16921621 23 - 220367699 TCgttcttgtcttctcattcttg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82723986 23 + 85787240 TCGTTTTTGTCTTCTCATTCTTG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14437836 17 - 49578535 ------TCATCATTTTATTCTCG i calJac3.chr19 C 0 C 0 s mm10.chr1 178920776 23 + 195471971 GCCACCATACAAGCCACTGCCTA i mm10.chr1 C 0 C 0 s canFam3.chr7 36510309 22 + 80974532 -CACCCTCTTGGTCCCATTCCTG i canFam3.chr7 C 0 C 0 e nomLeu3.chr5 140409890 16 - 143122389 I a score=936572.000000 s hg38.chr1_KI270759v1_alt 389876 311 + 425601 GAGGTCCATGTTGCTGAGGAGTGTGCAGCATTGGGCTTGTTCCACCGGCCATagcagggtgcagtga----attaagttagaaagcaggaggaggcttagaatcttgagctgtgtgacctttggggaataactgtcctctttgagcttcaattttctcatatgcaagtaaaac---gagaagattgataggtaatagccatggtctctctgctgcccacatcatatgagactatgcagataaTTTAAATAATGTT-ATGGTCATGTGATGTCTTTTCCTTAGAGCAATCTGTAGTCAGTGGGGTTTATTTTCAGTTGTT s panTro4.chr1 225148102 311 + 228333871 GAGGTCCATGTCGCTGAGGAGTGCGCAGCATTGGGCTTGTTCCACCGGCCATagcagggtgcagtga----attaagttagaaagcaggaggaggcttagaatcttgagctgtgtgacctttggggaataactgtcctctttgagcttcaattttctcatatgcaagtaaaac---gagaagattgatagataatagccatggtctctctgctgcccacatcatatgagactatgcagataaTTTAAATACTGTT-AGGGTCATGTGATGTCTTTTCCTTAGAGCAATCTGTAGTCAGTGGGGTTTATTTTCAGTTGTT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226518631 290 - 229942017 GAGGTCCATGTTGCTG-GCAGTGCACAGGACTGGGCTTGTTCCACCGGCCACAGCAGGGTGCAGTGA----ATTCAGTTAGAAAGC---AGGAGGCTTAGAATCTTGagctgtgtgacctttggggagtaactgtcctctttgagcttcagtttcctcgtatgcaagtcaaac---gggaagattggtagataata-----------------gcccacatcagatgagactatgcagataatttaaataatatc-atgGTCACGTGATGTCTTTTCCTTAGAGCAATCTGTAGTCAGTGGGGTTTATTTTCAGTTGTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140409906 311 - 143122389 GAGGTCCATGTTGCTGAGGAGTGCACAGGATTGGGCTTGTTCCACCAGCCATAGCAGGATGCAGTGA----ATTAAGTTAGAAAGC---AGGAGGCTTAGAATCTTGAgctgtgtgacctttggggaataactgtcctctttgagcttcagtttcctcatatgcaagtaaaacaaggagatgattggtagataatagccatcgtctctctgctgcccacatcatatgagactatgCAGATAATTTAAATAATATT-ATGGTCGTGTGATGTCTTTTCCTTAGAGCAATCTGTAGCCAGTGGGGTTTATTTTCAGTTGTT i nomLeu3.chr5 I 16 C 0 s rheMac3.chr1 17112271 307 - 229590362 GAGGTCCCTGTTGCTG-CGTGTGCACGGGATTGGGCTTGTTCCATCGGCCACAGCAGGGTGCGGTGA----ATTCAGTTAGAAAGC---AGGAGACTTAGGATCTTGagctgtgtgacctttggggaatcactgtcctctttgagcttcagtttcctcatatgcaagtcaaac---gagaggattggtagataata-ccatggtctctgagctgcccacatcataggagactatgcagataagtgaaataatatTGATGGTCATGTGATGTCTTTTCCTTAGAGCAATCTGTAGTCGGTGGGATTTATTTTCAGTTGTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223876216 307 - 227556264 GAGGTCCCTGTTGCTG-CGTGTGCACGGGATTGGGCTTGTTCCATCGGCCACAGCAGGGTGCAGTGA----ATTCAGTTAGAAAGC---AGGAGACTTAGGATCTTGagctgtgtgacctttggggaatcactgtcctctttgagcttcagtttcctcatatgcaagtcaaac---gagaggattggtagataata-ccatggtctctgagctgcccacatcataggagactatgcagataagtgaaataatatTGATGGTCATGTGATGTCTTTTCCTTAGAGCAATCTGTAGTCGGTGGGATTTATTTTCAGTTGTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16921644 307 - 220367699 gAGGTCCCTGTTGCTG-CGTGTGCACGGGATTGGGCTTGTTCCATCGGCCACAGCAGGGTGCAGTGA----ATTCAGTTAGAAAGC---AGGAGACTTAGGATcttgagctgtgtgacctttggggAATCACTGtcctctttgagcttcagtttcctcatatgcaaGTCAAAC---GAGAGGATTGGTAGATAATA-CCATGGTCTGTGTGCTGCCCACATCATAGGAGACTATGCAGATAAGTGAAATAATATTGATGGTCATGTGATGTCTTTTCCTTAGAGCTATCTATAGTCGGTGGGATTGATTTTCAGTTGTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82724009 307 + 85787240 GAGGTCCCTGTTGCTG-CGTGTGCACGGGATTGGGCTTGTTCCATCGGCCACAGCAGGGTGCAGTGA----ATTCAGTTAGAAAGC---AGGAGACTTAGGATCTTGagctgcgtgacctttggggaatcactgtcctctttgagcttcagtttcctcatatgcaagccaaac---gagaggattggtagacaata-ccatggtctctgagctgcccacatcataagagactatgcagataagtgaagtaatatTGATGGTCATGTGATGTCTTTTCCTTAGAGCAATCTGTAGTCGGTGGGATTGATTTTCAGTTGTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14437853 280 - 49578535 GAGCTCCATGCTGTTG-----------------GGCTTGTCCCATTGGCCATAGCAGCAT-----------ATTAAGTTAGAAAGC---AGGAGACTTAGAGTCTTGagccacgtgacctttcaggaataactatcctctctgagcttcagttttct--gatgcaaggaaaag---gagaagattggtaggtaacagccacggtctct--gctgcccacatcata-gagactatgcagataattcaaataatatTGATGGTCATATGATATCTTTTCCTTAAAGCAATCTGTAGTCAGTGGGGTTTATCTTCAGTCGTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178920799 245 + 195471971 TAGCTCCACGTTGTTG-------AATGAGCCTGGGCTTACTGCAT--GCTATAG------------------------TGGAAAG----ATTAAGCTTGGGGTCATGagctatttgactt--------taattagcctttctgagcctcaattttcttatgta-------------tgggagtttgatagataatggccagggtccttctgctgggcacattatt----attatgaaaccaa---aagtaa---------tcgtatgACATCCTTTCCATAGGGAAACCCCGTGTGAATGAACTTTATTGTAGGTTGTT i mm10.chr1 C 0 I 652 s canFam3.chr7 36510331 274 + 80974532 GAGATCCATGTTGGTGGAAAGTGCA------TGGGCTtg--------gccagagtgtactgcagtgagaagacggagctggagagc---aggagacttggagtcttgagctgtgtggcctttagggaataactaccctctgagggcttcagtttgctcacataaaagtaaaac---gaggggattggtagagaaccagcacggtctctctaatgctcacgtcatatgaGACAATGCGGATGATATAAAGAATGTTGGTGGTAATAGGACTTCCTTTCCAAA-------------------------ATCTTGATAGGTC i canFam3.chr7 C 0 C 0 a score=407359.000000 s hg38.chr1_KI270759v1_alt 390187 132 + 425601 CAACATTGACCAGGTATCTTCTGTGCTCTTAGAGCTTGGTGAT-----AGTTTCTGGTGTGTGGGTGGAGGTGGAGGCAGCCGGCACAGGGGACAAGGCCACTGTAAGAAGTTTGTAATCTAATTGGAGAGAAAGGG s panTro4.chr1 225148413 132 + 228333871 CAACATTGACCAGGTATCTTCTGTGCTCTTAGAGCTTGGTGAT-----AGTTTCTGGTGTGTGGGTGGAGGTGGAGGCAGCCGGCACAGGGGACAAGGCCACTGTAAGAAGTTTGTAATCTAATCGGAGAGAAAGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226518921 131 - 229942017 AGACATTGACCAGGTGTCTTCTGTGCTCTTTGAGCTTGGT-AT-----AGTTTCTGGTGTGTGGCTGGAGGTGGAGGCAGCCGGCACAGGGCACAAGGCCACTGTAAGAAGTTTGTAACCTAATTGGAGAGAAAGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140410217 132 - 143122389 AAACATTGACCAGGTATCTTCTGTGCTCTTAGAGCTTGGTGAT-----AGTTTCTGGTGTGTGGGTGGAGGTGGAGGCAGCCGGCACAGGGGACAAGGCCACTGTAAGAAGTTTGTAATCTAACTGGAGAGAAAGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17112578 137 - 229590362 AAACGTTGACCAGGTATCTTCTGTGCTCTTAGAGCTTGGTGATGTAGAAGTTTCTGGTGTGTGGGTGGAGGTGGAGGCAGCCGACACAGGGGACAAGGCCACCGTAAGAAGTTTGTCATCTAATTGGAGAGAAAGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223876523 137 - 227556264 AAACGTTGACCAGGTGTCTTCTGTGCTCTTAGAGCTTGGTGATGTGGAAGTTTCTGGTGTGTGGGTGGACGTGGAGGCAGCCGACACAGGGGACAAGGCCACCGTAAGAAGTTTGTCATCTAATTGGAGAGAAAGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16921951 137 - 220367699 AAACGTTGACCAGGTGTCTTCTGTGCTCTTAGAGCTTGGTGATGTGGAAGTTTCTGGTGtgtgggtggaggtggaggcagctGGCACAGGGGACAAGGCCACCGTAAGAAGTTTGTCATCTAATTGGAGAGAAAGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82724316 134 + 85787240 AAACGTTGACCAGGTG---TCTGTGCTCTTAGAGCTTGGTGATATGGAAGTTTCTGGTGTGTGGGTGGAGGTGGAGGCAGCTGGCACAGGGGACAAGGCCACCGTAAGAAGTTTGTCATCTAATTGGAGAGAAAGGG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14438133 130 - 49578535 AAACATTGATCAGGTATCTTCTGTGCTCTCAGAGCTTGGCGAT-TTGAAGTTTCAGGTGTGTGG------GTGGAGGCAGCCACCATAGAAGACAAGGCTGCCCTAAGAAGTTTGTCATCTAGTTGGAGAGAAAGGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36510605 120 + 80974532 ---------CC---CCTCTGCGGTGCTTTTGAAACTTAATGACATGTGAGGTGCGGGCGTG-----GTGGGGAGGGGCAGGCAGCATCAAAGCCAAGGCCACTACAAGAGGTTTGTCATCTAGTTGGTGACAAAGTA i canFam3.chr7 C 0 C 0 e mm10.chr1 178921044 652 + 195471971 I a score=731267.000000 s hg38.chr1_KI270759v1_alt 390319 246 + 425601 TGAAAAGCGTGGAAT--------AGAGAA--CAGTGAACTGAG-TGCATTCCCAGAT-GCTGAGTGGGGTAGTGAAGGCCCAAGTGGAGAGAGCATTTAGACAAAGCAGGATCCTGC--AAGGCAAAG--GCTGCAGAGAAATGTCGGGATTGAGCTTGGTCCGGGAGGGTGCTTACATCGGGACAGGCAGAG-AGGGCGCAGGGCATCGAGGCTGAGGCAGGG----ATGGGACTGCAAACTCCCAGCGGCAAGAGCCTGGCCTGT s panTro4.chr1 225148545 246 + 228333871 TGAAAAGCGTGGAAT--------AGAGAA--CAGTGAATTGAG-TGCATTCCCAGAT-GATGAGTGGGGTAGTGAAGGCCCAAGTGGAGAACGCATTTAGACAAAGCAGGATCTTGC--AAGGCAAAG--GCTGCAGAGAAACGTCGGGATTGAGCTTGGTCCAGGAGGGTGCTTACATCGGGACAGGCAGAG-AGGGCGCAGGGCATCGAGGCTGAGGCAGGA----ATGGGGCCGCAAGCTCCCAGCGGCAAGAGCCTGGCCTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226519052 246 - 229942017 TGAAAAGTGTGGAAT--------AGAGAA--CAGTGAACTGAG-TGCATTCCCAGAT-GTTGAGTGGGGTAGTGAAGACCCAAGTGGAGAGAGCATTTAGACAAAGCAGGATCCTGC--AAGGCAAAG--GCTGCAGAGAAACGTCAGGATTGAGCTTGGTCTGGGAGGGTGCTTACATCGGGACAGGCAGAG-AGGGTGCAGGGTATTGAGGCTGAGGCAGGA----ATGGGACCACAAGCTCCCAGCAGCAAGAGCCTGGCCTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140410349 246 - 143122389 TGAAAAGTGTGGAAT--------AGAGAA--CAGTGAACCGAG-TGCACTGCCAGAT-GCTGAGTGCGGTAGCGAAGACCCAAGTGGAGAGAGCATTTAGACAAAGCAGGATCCTGC--CAGGCAAAG--GCTGCAGAGAAACGTCGGGATTGAGCTTGGTCCGGGAGGGTGCTTACGTCGGGACAGGCAGAG-AGGGTGCAGGGCATTGAGGCTGAGGCAGGA----ATGGGACCACCAGCTCCCAGCAGCAAGAGCCTGGCCTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17112715 248 - 229590362 TGAAAAGCATGGAAT--------AGAGAA--CAGTGAACTGAG-TGCACTGCCAGAT-GCTGAGAGGGGAAGTGAAGACCCAAGTGGAGAGAGCATTTAGACAAAGCAGGATCCTGCAAAAGGCAGAG--GCTGCAGAGAAACGTTGGGATTGAGCTTGGTCCGGGAAGGTGCTTACAGCGGGATAGGCAGAG-AGGGTGCAGGGCACTGAGGCTGAGGCAGGA----ATGGGACCACAAGCTCCCAGCAGCAAGAGCCTGGCCTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223876660 248 - 227556264 TGAAAAGCATGGAAT--------AGAGAA--CAGTGAACTGAG-TGCACTGCCAGAT-GCTGAGAGGGGAAGTGAAGACCCAAGTGGAGAGAGCATTTAGACAAAGCAGGATCCTGCAAAAGGCAGAG--GCTGCAGAGAAACGTTGGGATTGAGCTTGGTCCGGGAAGGTGCTTACAGCGGGATAGGCAGAG-AGGGTGCAGGGCACTGAGGCTGAGGCAGGA----ATGGGACCACAAGCTCCCAGCAGCAAGAGCCTGGCCTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16922088 249 - 220367699 TGAAAAGCATGGAAT--------AGAGAA--CAGTGAACTGAG-TGCACTGCCAGAT-GCTGAGAGGGGAAGTGAAGACCCAAGTGGAGAGAGCATTTAGACAAAACAGGATCCTGcaaaaggcagag--gctgcagacaAACGTTGGGATTGAGCTTGGTCCAGGAAGGTGCTTACAGCGGGACAGGCAGAGAAGGGTGCAGGgcactgaggctgaggcagga----atgggACCACAAGCTCCCAGCAGCAAGAGCCTGGCCtgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82724450 248 + 85787240 TGAAAAGCGTGGAAT--------AGAGAA--CAGTGAACTGAG-TGCACTGCCAGAT-GCTAAGAGGGGTAGTGAAGACCCAAGTGGAGAGAGCATTTAGACAAAGCAGGATCCTGCAAAAGGCAGAG--GCTGCAGAGAAACGTCGGGATTGAGCTTGGTCCGGGAAGGTGCTTACATTGGGACAGGCAGAG-AGGGTGCAGGGCACTGAGGCTGAGGCAGGA----ATGGGACCACAAGCTCCCAGCAGCAACAGCCTGGCCTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14438263 248 - 49578535 TGAAAAGCGTGGAAT--------AGTTCACTCAGGGAACTGAG-TGCCCGGCCCAAT-GCTGAGCGGCGTAGTGAAGACCCAGGTGGAGAAGGCATTGAGACAAAGCAGGATCCCGC--AAGTCACGG--GCTGCAGAGAAACATCGGGATTGAGTTTGGTCATGGAGGGTGCTTGCATCGGGACAGGCAGAG-AGGGTGCAGGCCTTGCAGGCTGAGGCAGGA----ATGGGAGCACAAGCTCCAGGCAGCAAGAGCCTGGCTTGT i calJac3.chr19 C 0 C 0 s mm10.chr1 178921696 244 + 195471971 TGAGAAGTGTGAAATGTCCAGAGAGAGGA--CAATGAACAGAGACATACTGCCATGTGGCTGAGC-CCATAATGCAG--CCAGCAGAAGGATGCTTTTGCCATAGGCAAAGTCCTGC--AAATCAAGGCAACTGCAGAAGGCTGTTGGGGAAAGGCCTGGTCCTGAAGGATGCTGCTGCTCATACGGGCTTTG----------------GAGGCTGAGAAAATAAATCATGGGAGCCCAGGTTTGGAGCAGCAAGAGCATGGCCTAT i mm10.chr1 I 652 I 28 s canFam3.chr7 36510725 129 + 80974532 CGAAAAGCATGGAAC--------AGA--A--CGGTGACCCAGG-CATACTGCCAAGT-CCGGAGTGGTGTAGTGCAG-TGTGAGCGTGGGAACCATTTAGAC-------------------------G---------------------------------------------------TGGGAGAGGCCCAG-----------------------------------AT----CCACAAGAGTCTGTCAGGAAACACT-------- i canFam3.chr7 C 0 C 0 a score=20640.000000 s hg38.chr1_KI270759v1_alt 390565 6 + 425601 GGGCGA s panTro4.chr1 225148791 6 + 228333871 GGGCGA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226519298 6 - 229942017 GGGCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140410595 6 - 143122389 GGGCAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17112963 6 - 229590362 GGGCAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223876908 6 - 227556264 GGGCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16922337 6 - 220367699 gggcaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82724698 6 + 85787240 GGGCAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14438511 6 - 49578535 GGGCAG i calJac3.chr19 C 0 C 0 s canFam3.chr7 36510854 6 + 80974532 GGGCAA i canFam3.chr7 C 0 C 0 e mm10.chr1 178921940 28 + 195471971 I a score=161454.000000 s hg38.chr1_KI270759v1_alt 390571 65 + 425601 CACAGCGAGATTAACTCAAGGA-GGGACCGTCCCAGCAAGCAGAGCAAGACGCTAGCAAACGCAAG s panTro4.chr1 225148797 65 + 228333871 CACAGCGAGATTAACTCAAGGA-GGGACCGTCCCAGCAAGCAGAGCAAGACGCTAGCAAACGCAAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226519304 66 - 229942017 CACAGTGAGATTAACTCAAGGAGGGGACTGTCCCAACAAGCAGAGCAAGACACTAGCAAACGCAAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140410601 65 - 143122389 CACAGTGAGATTAACTCAGGAG-GGGACCGTCCCAACAAGCAGAGCAAGACACTAGCAAACGCAAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17112969 66 - 229590362 CACAGTAAGAATAACTCAAGCAAGGGATAGTCCCAACAAGTAGAGCAAGACACTGGGAAACATAAG i rheMac3.chr1 C 0 I 9 s macFas5.chr1 223876914 66 - 227556264 CACAGTAAGAATAACTCAAGCAAGGGATAGTCCCAACAAGTAGAGCAAGACACTGGGAAACATAAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16922343 66 - 220367699 cacagtaagaatAACTCAAGCAAGGGATAGTCCCAACAAGTAGAGCAAGACACTGGGAAACATAAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82724704 66 + 85787240 CACAGTGAGAATAACTCAAGCAGGGGATAGTCCCAACAAGTAGAGCAAGACACTGGGAAACATAAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14438517 61 - 49578535 CATAGTGAGATTAACTCACAGA-GGGACATTCC---CAAGTGTAGCAAGAGACGAGGAAACGTAA- i calJac3.chr19 C 0 C 0 s mm10.chr1 178921968 62 + 195471971 CATATTGGGGTTCATTCAGA---GGGAATGTTC-AAGGAGCACAGTGAGAGCATAGAAAATGTAAA i mm10.chr1 I 28 I 1 s canFam3.chr7 36510860 60 + 80974532 CAGGGTGAGATTAATTCACCAGGGGGGTGTTCTTGATGGATGTA--ATGACCATAGAAGACG---- i canFam3.chr7 C 0 C 0 a score=350.000000 s hg38.chr1_KI270759v1_alt 390636 2 + 425601 CC s panTro4.chr1 225148862 2 + 228333871 CC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226519370 2 - 229942017 CC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140410666 2 - 143122389 CC i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82724770 2 + 85787240 CC i chlSab2.chr25 C 0 I 7 s mm10.chr1 178922031 1 + 195471971 C- i mm10.chr1 I 1 C 0 e canFam3.chr7 36510920 0 + 80974532 C e calJac3.chr19 14438578 0 - 49578535 C e rheMac3.chr1 17113035 9 - 229590362 I e papAnu2.chr1 16922409 0 - 220367699 C e macFas5.chr1 223876980 0 - 227556264 C a score=-4814.000000 s hg38.chr1_KI270759v1_alt 390638 30 + 425601 ACAGTCACACCCGGAACAAACACAAGCCAC s panTro4.chr1 225148864 30 + 228333871 ACAGTCACACCCGGAACAAACGCAAGCCAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226519372 29 - 229942017 ACACTCACG-CCGGAACAAACACAAGGCAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140410668 30 - 143122389 ACAGTCACACCCGGAACAAACGCAAGCCAC i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223876980 9 - 227556264 ---------CCCAGATCA------------ i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16922409 9 - 220367699 ---------CCCAGATCA------------ i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14438578 10 - 49578535 --------ACCCAGATCT------------ i calJac3.chr19 C 0 C 0 s mm10.chr1 178922032 8 + 195471971 -----------CGGGTGAT----------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36510920 12 + 80974532 ------GAACTCAGACCG------------ i canFam3.chr7 C 0 C 0 e rheMac3.chr1 17113035 9 - 229590362 I e chlSab2.chr25 82724772 7 + 85787240 I a score=150697.000000 s hg38.chr1_KI270759v1_alt 390668 63 + 425601 AGTCACACCTGGAACATCTGGGAGCTACAAGAACAGTACACAT-TATTCTATATTCTACATAGT s panTro4.chr1 225148894 63 + 228333871 AGTCACACCTGGAACATCTGGGAGCTACAAGAACAGTACACAT-TATTCTATATTCTACATAGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226519401 54 - 229942017 AGTC---------ACATCTGGGAACTACAAGAACAGTACACAT-TATTCTATATTCTACATAGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140410698 63 - 143122389 AGGCACACCTGGAACATCCAGGAACTACAAGAACAGTACACAT-TATTCTCTATTCTACATAGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17113044 58 - 229590362 AGTCACACCTGGAACATCTGGGAACTACAAGAACAGTACACAT-TA-----TATTCTACATAGT i rheMac3.chr1 I 9 C 0 s macFas5.chr1 223876989 58 - 227556264 AGTCACACCTGGAACATCTGGGAACTACAAGAACAGTACACAT-TA-----TATTCTACATAGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16922418 58 - 220367699 AGTCGCACCTGGAACATCTGGGAACTACAAGAACAGTACACAT-TA-----TATTCTACATAGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82724779 58 + 85787240 AGTCACACCTGGAACATCTGGGAACTACAAGAACAGTACACGT-TA-----TATTCTACATAGT i chlSab2.chr25 I 7 C 0 s calJac3.chr19 14438588 56 - 49578535 AGTTACACTTGGAACATCTGCGAACTACGAGAACAGTGCACAT--------CATTCCACATGGT i calJac3.chr19 C 0 I 309 s mm10.chr1 178922040 56 + 195471971 -GTTATCCCTTGAGCATGTGGGAAATGTAACAAGAACACACAGATG-----CATTCTATATA-- i mm10.chr1 C 0 C 0 s canFam3.chr7 36510932 35 + 80974532 ACTTACACCTTCAATGCATTGCAGCTATGATACGA----------------------------- i canFam3.chr7 C 0 C 0 a score=3181618.000000 s hg38.chr1_KI270759v1_alt 390731 1086 + 425601 TCTAAA--------AGAATAT-CAGTATAT---TATTGTAGTTGGCAATGGGGAGTCATTACAGGCTCTTGACCAACAACGTGATAAGGTGAGAGAAATGAT-GTTGCTTTTATTgatggattttcattgcttcatccacagctccttgccagcccctctatggtcagcaagatgaaattgtgTATAGCCCAGAGCCAAGAATG---------------AGCCCAGGAGGGAAGGG---AATGTCTGTCCTGGCCAGTGCACATATCAGCAGCTGAGGATGTCAATCTGTGATACACAGTTGATGCCATAATTACACCAGCTGAG-CCCCTACCCTGAGCCCCCAGTCCTCGCGCTCCCCCGTCCCCT---ATCATCCATTATATGTTATGTCAATCC---------------TATTTTCTTCCTCCAGTCTCTTAACATTTCACCCTCATCCTGGTGTGTTACTTCCTTGGATTCTTTCCCTTGCTTTCCTTTTCTTGGACTGGATGGGGAAGTCTGACAGTTAGATGAGCACCTTGGTCTGAATTAAATTCATTCCCACCACAGGGAGGCT-------------CAGCACCAGAAAAGCCCTGG----AGTGAG--GGAGGGTCTGCCTGAAGAGAAGCCC-CTCAGGGAAGCATGGAGGTTCTGGAATGC-TCCAGACCTTGGCCCGCCTGGACATGAGC------AAGGCCTGTTCTGCGCTCGACCCAGCCTGCTTGGTGCCCAGCACTGGGCTGGTGCAGGTTACTGT--------TGGATattattggttgattcattgatgggctggttg--------cttggttggCGGCACAGTCCTGAAAGTTTACTCATGTTTATTTT-CTGTGTATTTCTCATATCTTTTCCTGCTGGTGCTAAGTGCTTTAAGTGTTG----------AGTCTAGTCTGCTA-----------------------CTTTGTCATT-CTAAGCGCCAGACCCTGTG----C--CTTTCTCTTGGTGCTGAGTCAACATTACTGACTGATGGGCCTGTCTTGTGAGTTGTGACTTGC-ACCTGTAGTGAATTGAGCTCCCAGGCTACCAGGTTCAGTTCCCAGGGC-GCTGCACAAAAACTTGTGACT----AATTGCTCCTCA-------CCGAGGGCACCATGGTTTGCTCTGCCAA-CCTCTCCTATTCGTTTGGTTCTCAGGCACAT--CCTGGTTTTGT s panTro4.chr1 225148957 1086 + 228333871 TCTAAA--------AGAATAT-CAATATAT---TATTGTAGTTGGCAATGGGGAGTCATTACAGGCTCTTGACCAACAACGTGATAAAGTGAGAGAAATGAT-GTTGCTTTTATTGATGGATTTTCATTGCTTCATCCACAGCTCCTTGCCAGCCCCTCTATGGTCAGCAAGATGAAATTGTGTATAGCCCAGAGCCAAGAATG---------------AGCCCAGGAGGGAAGGG---AATGTCTGTCCTGGCCAGTGCACATATCAGCAGCTGAGGATGTCAATCCGTGATACACAGTTGATGCCATAATTACACCAGCTGAG-CCCCTACCCTGAGCCCCCAGTCCTCGCGCTCCCCCGTCCCCT---ATCATCCATTATATGTTATGTCAATTC---------------TATTTTCTTCCTCCAGTCTCTTAACATTTCACCCTCATCCTGGTGTGTTACTTCCTTGGATTCTTTCCCTTGCTTTCCTTTTCTTGGACTGGATGGGGAAGTCTGACAGTTAGATGAGCACCTTGGTCTGAATTAAATTCATTCCCACCACAGGGAGGCT-------------CAACACCAGAAAAGCCCTGG----AGTGAG--GGAGGGTCTGCCTGAAGAGAAGCCC-CTCAGGGAAGCATGGAGGTTCTGGAATGC-TCCAGGCCTTGGCCCGCCTGGACATGAGC------AAGGCCTGTTCTGCGCTCGACCCAGCCTGCTTGGTGCCCAGCACTGGGCTGGTGCAGGTTACTGT--------TGGATATTATTGGTTGATTCATTGATGGGCTGGTTG--------CTTGGTTGGCGGCACAGTCCTAAAAGTTTACTCATGTTTATTTT-CTGTGTATTTCTCATATCTTTTTCTGCTGGTGCTAAGTGCTTTAAGTGTTG----------GGTCTAGTCTGCTA-----------------------CTTTGTCATT-CTAAGCATCAGACCCTGTG----C--CGTTCTCTTGGTGCTGAGTCAACATTACTGACTGATGGGCCTGTCTTGTGAGTTGTGACTTGC-ACCTGTAGTGAATTGAGCTCCCAGGCTACCAGGTTCAGTTCCCAGGGC-GCTGCACAAAAACTTGTGACT----AATTGCTCCTCA-------CCGAGGGCACCATGGTTTGCTCTGCCAA-CCTCTCCTATTCATTTGGTTCTCAGGCACAT--CCTGGTTTTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226519455 1089 - 229942017 TCTAAA--------AGAATAT-CAATATAT---TATTGTAGTTGGCAATGGGGAGTCATTATAGGCTCTTGACCAACAACGTGATAAGGTGAGAGAAATGAT-GTTGCTTTTATTGATGGATTTTCATTGCTTCATCCACAGTTCCTTGCCAGCCCCTCTATGGTCAGCAGGATGAAATTGTGTATAGCCCAGAGCCAAGAATG---------------AGCCCAGGAGGGAAGGG---AATGTCTGTCCTGGCCAGTGCACATGTCAGCAGCTGAGGATGTCAATCCATGATACACAGTTGATGCCATAATTACACCAGCCGAG-CCACTGCCCTGAGCCCCCAATCCTCACGCTCCCCTGTCCCCT---ATCATCCATTATTTGTTATGTCAATTC---------------TATTTTCTTCCTCCAGTC-CTTTACATTTCACCCTCATCCTGGTGTGTTACTTCCTTGGATTCTTTCCCTTGCTTTCCTTTTCTTGGACTGGATAGGGAAGTCTGACAGTTAGATGAGCACCTTGGCCTGAATTAAACTCATTCCCACCACAGGGAGGCT-------------CAGCACCAGAAAAGCCCTGG----AGTGAG--GGAGGGTCTGCCTGAAGAGAAGCCC-CTCAGGGAAGCATGGAGGTTCTAGAATGC-CCCTGGCCTTGGCCCGCCTGGACATGAGC------AATGCCTGTTCTGCACTTGACCCAGCCTGCTTGGTGCCCAGCACTGGGCTGGTGCAGGTTACCGT--------TGGATATTATTGGTTGATTCATTGATGGGCTGGTTG--------CTTGGTTGGCAGCATAGTCCTAAAAGTTTGCTCATATTTCTTTT-CTGTGTATTTCTCGTATCTTGTCCTGCTGGTGCTAAGTGCTTTAAATGTTG----------AGTGTAGTCTGCTGCTTT-------------------CTTTGTCATT-CTAAGCATCAGATCCTGTG----C--CTTTCTCTTGGTGCTGAGTCAACATTACTGACTGATGGGCCTGTCTTGTGAGTTGTGACTTGC-ACCTGTAGTGAATTGAGCTCCCAGGCTACCAGGTTCAGTTCCCAGGGC-GCTGCACAAAAACTTGTGACT----AACTGCTCCTCA-------CCGAGGGCACCGTGGTTTGCTCTGCCAA-CCTCTCCTATTCATTTGGTTCTCAGGCACAT--CCTGGTTTTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140410761 1089 - 143122389 TCTAAA--------AGAGTAT-CAATATAT---TACTGTAGTTGGCAATGGGGAGTCATTATAGGCTCTTGACCAACAACGTGATAAGGTGAGAGAAATGAT-GTTGCTTTTATTGATGGATTTCCATTGCTCCATCCACAGTTCCTTGCCAGCCCCTCTATGGTCAGCAAGATGAAACTGTGTATAGTCCAGAGCCAAGAATG---------------AGCCCAGGTCGGGAGGG---AATGTCTGTCCTGGCCAGTGCGCATGTCAGCAGCTGAGGGTGTCGATCCGTGATACACAGTTGATGCCATAATCACACCAGCCGAG-CCACTACCCTGAGCCCCCAATCCTCGCGCTCCCCCGTCGCCT---ATCATCCACTATATGTTATGTCAATTC---------------TATTTTCTTCCTCCAGTC-CCTTACATTTCTCCCTCATCCTGGTGTGTTACCTCCTTGGATTCTTTCCCTTGCTTTCCTTTTCTCGGACTGGATGGGGAAGTCTGACAGTTAGATGAGCACCTTGGTCTGAATTAAATTCATTCCCACCACAGGGAGGCT-------------CAGCACCAGAAAAGCCCTGG----AGTGAG--GGAGGGTCTGCCTGAAGAGAAGCCC-CTCAGGGAAGCATGGAGCTTCTGGAATGC-CCCAGGCCTTGGCCCGCCTGGACATGAGC------AAGGCCTGTTCTGCACTTGACCCAGCCTGCTTGGCGCCCAGCACTGGGCTGGTGCAGGCTACTGT--------TGGATATTATTGGTTGGTTCATTGACGGGCTGGTTG--------CTTGATTGGCAGCATAGTCCTAAAAGTGTGCTCATACTTCTTTT-CTGTGTATTTCTCGTATCTTGTCCTGCGGGTGCTAAGTGCTTTAAATGTTG----------AGTCTAGTCTGCTACTTT-------------------CTTTGTCATT-CTAAGGATCAGAGCCTGTG----C--CTTTCTCTTGGTGCTGAGTCAACATTACTGACTGATGGGCCTGTCTTGTGAGTTGTGACTTGC-ACCTGTAGTGAACTGAGCTCCCAGGCTACCAGGTTCAGTTCCCAGGGT-GCTGCACAAAAACTTGTGACT----AATTGCTCCTCA-------CCGAGGGCACCGTGGTTTGCTCTGCCAA-CCTCTCCTATTCGTTTGGTTCTCAGGCACAT--CCTGGTTTTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17113102 1082 - 229590362 TCTATA--------AGAAGATACAACATAT---TATTGTAGGTGGCAGTGGGGAGTCATTGCAGGCTCTTGACCAACGAAGTGATAAGGTGAGAGAAATGAT-GTTGCTTTGATTGATAGATTTTCATTGCTCCATCCACAGTTCCTTGCCAGCCCCTCTATGGTCAGCACCATGAAATTGCGTATAGCCCAGAGCCAAGAATG---------------AGCCCAGGTGGGGAGGG---AATGTGTGTCCTGGCCAGTGTGCATGGCAGCAGCTGAGGATGTCAATCCGTGATACACAGTTGATGCCATAATTGCACCAGCCGAGCCCCCTACCCTGAGCCCCCAATCCTCGCACTCCCCCGTCCCC----ATCATCCATTATATGTTATGTCAATTC---------------TCTTGTCTTCCTCCAGTC-CCTGACATTGCACCCTCATCCTGGTGTGTTACTTCCTCGGACTCTTTCCCTTGCTTTCCTTTTCTTGGACTGGATGGGGAAGTCTGACCAGTATATGAGTGCCTTGGCCTGAATTGAATTCATTCCCACCGCAGGGAGGCT-------------CGGCACCAGAAAAGCCCTGCAGGGAGGGAG--GGAGGGTCTGCCTGAAGAGAAGCTC-CACAGGGAGGCATGGTG-CTCTGGAATGC-CCCAGACCTTGACCTGCCTGGACGTGAGC------AAGGCCTGTTCTACACTTGACTCAGCCTGCTTGGTGCTGAGCACTGGGCTGGTGTCGGTTACCGT--------TGGATATTATTGATTGATTCATTGATGGGCTGGCTG--------CTTGGTTGGCAGTATAGTCCTAGAAGTTTGCTCATATTTTTTTTCCTGTGTATTTCTCGTATCTTGTTCTGCTGGTG----GTGCTTTAAGTGCTG----------AGTCTAATCTGCTACTTT-------------------ATTTGTCATT-CTAAGCATCAGACAC--TG----C--CTTTCTGTTGGTGCTGAGTCAACATTACTGACTGATGGGCCTGTCTTGTGAGTTGTGACTTGC-ACCTGTAGTGAACTGA--------GCTACCAGCTTCAGTTCCCAGAGT-GCTGCACAAAAACTTGTGACT----AATTGCTCCTCACCAAGGTCCGAGGGCACCGTGGTTTGCTCTGCCAA-CCTCTCGTGTTCATTTGGTTCTCAGGCACAT--CCTG-----GT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223877047 1082 - 227556264 TCTATA--------AGAAGATACAACATAT---TATTGTAGGTGGCAGTGGGGAGTCATTGCAGGCTCTTGACCAACGAAGTGATAAGGTGAGAGAAATGAT-GTTGCTTTGATTgatagattttcattgctccatccacagttccttgccagcccctctatggtcagcaccatgaaattgcgTATAGCCCAGAGCCAAGAATG---------------AGCCCAGGTGGGGAGGG---AATGTGTGTCCTGGCCAGTGTGCATGGCAGCAGCTGAGGGTGTCAATCCGTGATACACAGTTGATGCCATAATTGCACCAGCCGAGCCCCCTACCCTGAGCCCCCAATCCTCGCACTCCCCGGTCCCC----ATCATCCATTATATGTTATGTCAATTC---------------TCTTGTCTTCCTCCAGTC-CCTGACATTGCACCCTCATCCTGGTGTGTTACTTCCTCGGACTCTTTCCCTTGCTTTCCTTTTCTTGGACTGGATGGGGAAGTCTGACCGGTATATGAGTGCCTTGGCCTGAATTGAATTCATTCCCACCGCAGGGAGGCT-------------CGGCACCAGAAAAGCCCTGCAGGGAGGGAG--GGAGGGTCTGCCTGAAGAGAAGCTC-CACAGGGAGGCATGGTG-CTCTGGAATGC-CCCAGACCTTGACCTGCCTGGACGTGAGC------AAGGCCTGTTCTACACTTGACTCAGCCTGCTTGGTGCTGAGCACTGGGCTGGTGTCGGTTACCGT--------TGGATattattgattgattcattgatgggctggctg--------cttggttgGCAGTATAGTCCTAGAAGTTTGCTCATATTTTTTTTCCTGTGTATTTCTCGTATCTTGTTCTGCTGGTG----GTGCTTTAAGTGCTG----------AGTCTAATCTGCTACTTT-------------------ATTTGTCATT-CTAAGCATCAGACAC--TG----C--CTTTCTGTTGGTGCTGAGTCAACATTACTGACTGATGGGCCTGTCTTGTGAGTTGTGACTTGC-ACCTGTAGTGAATTGA--------GCTACCAGCTTCAGTTCCCAGAGT-GCTGCACAAAAACTTGTGACT----AATTGCTCCTCACCAAGGCCCGAGGGCACCGTGGTTTGCTCTGCCAA-CCTCTCGTGTTCATTTGGTTCTCAGGCACAT--CCTG-----GT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16922476 1078 - 220367699 TCTATA--------AGAAGATACAACATAT---TATGGTAGGTGGCAGTGGGGAGTCATTGCAGGCTCTTGACCAACGAAGTGATAAGGTGAGAGAAATGAT-GTTGCTTTGATTGATAGATTTTCATTGCTCCATCCGCAGTTCCTTGCCAGCCCCTCTATGGTCAGCACCATGAAATTGTGTATAGCCCAGAGCCAAGAATG---------------AGCCCAGGTGGGGAGGG---AATGTGTGTCCTGGCCAGTGTGCATGGCAGCAGCTGAGGGTGTCAATCCGTGATACACAGTTGATGCCATAATTGCACCAGCCGAGCCCCCTACCCTGAGCCCCCAATCCTCGCGCTCCCCCGTCCCC----ATCATCCATTATATGTTATGTCAATTC---------------TCTTGTCTTCCTCCAGTC-CCTGACATTGCACCCTCATCCTGGTGTGTTACTTCCTCGGACTCTTTcccttgctttccttttcttggaCTGGATGGGGAAGTCTGACCGGTAGATGAGCGCCTTGGCCTGAATTGAATTCATTCCCACCGCAGGGAGGCT-------------CGGCACCAGAAAAGccctgcagggagggag--ggagggtctgCCTGAAGAGAAGGTC-CACAGGGAGGCATGGTG-CTCTGGAATGC-CCCAGACCTTGACCTGCCTGGACGTGAGC------AAGGCCTGTTCTACACTTGACTCAGCCTGCTTGGTGCTGAGCACTGGGCTGGTGTCAGTTACCGT--------TGGATATTATTGATTGATTCATTGATGGGCTGGCTG--------CTTGGTTGGCGGTATAGTCCTAGAAGTTtgctcatattttttttcctgtgtatttcTCGTATCTTGTTCTGCTGGTG----GTGCTTTAAGTGCTG----------AGTCTAATCTGCTAC-----------------------TTTGTCATT-CTAAGCATCAGACAC--TG----C--CTTTCTGTTGGTGCTGAGTCAACATTACTGACTGATGGGCCTGTCTTGTGAGTTGTGACTTGC-ACCTGTAGTGAATTGA--------GCTACCAGCTTCAGTTCCCAGAGT-GCTACACAAAAACTTGTGACT----AATTGCTCCTCACCAAGGCCCGAGGGCACCGTGGTTTGCTCTGCCAA-CCTCTCGTGTTCATTTGGTTCTCAGGCACAt--cctg-----gt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82724837 1081 + 85787240 TCTATA--------AGAAGATACAATATACGGATATTATAGGTGGCAGTGGGGAGTCATTGCAGGCTCTTGACCAACGAAGTGATAAGGTGAGAGAAATGAT-GTTGCTTTGATTgatggattttcattgctccatccacagttccttgccagcccctctatggtcagcaccatgaaattgtgTATAGCCCAGAGCCAAGAATG---------------AGCCCAGGTGGGGAGGG---AATGTCTGTCCTGGCCAGTGCGCATGGCAGCAGCTGAGGGTGTCAATCCGTGATACACAGTTGATGCCATAATTGCACCAGCCGAG-CCCCTACCCTAAGCCCCCAATCCTCGCACTGCCCCGTCCCC----ATCATCCATTATATGTTATGTCAATTC---------------TCTTTCCTTCCCCCAGTC-CCTGACATTTCCCCCTCATCCTGGTGTGTTACTTTCTCGGACTCTTTCCCTTGCTTTCCTTTTCTTGGACTGGATGGGGAAGTCTGACCGGTAGATGAGTGCCTTGGCCTGAATTGAATTCATTCCCACCACAGGGAGGCT-------------TGGCACCAGAAAAGCCCTGC----AGGGAG--GGAGGGTCTGCCTGAAGAGAAGCTC-CACAGGGAGGCATGGTG-CTCTGGAATGC-CCCAGGCCTTGACCTGCCTGGACACGAGC------AAGGCCTGTTCCACACTTGACCCAGCCTGCGAGGTGCCCAGCACTGGGCTGGTGTCGGTTACCGT--------TGGATATTATTGATTGAATCATTGATGGGCTGGTGG--------CTTGGTTGGCAGTATAGTCCTAAAAAATTGCTCATATTTGTTTT-CTGTGTATTTCTCGTATCTTGTTCTGCTGGTG----GTGCTTTAAGTGCTG----------AGTCTAATCTGCTACTTT-------------------ATTTGTCATC-CTAAGCATCAGACACTGTG----C--CTTTCTGTTGGTGCTGAGTCAACATTACTGACTGATGGGACTGTCTTGTGAGTTGTGACTTGC-CCCTGTAGTGCATTGA--------GCTACCAGGTTCAGTTCCCAGAGT-GCTGCACAAAAACTTGTGACT----AATTGCTCCTCACCAAGGCCCGAGGGCACGGTGGTTTGCTCTGCCAA-CCTCTCCTGTTCATTTGGTTCTCAGGCACAT--CCTG-----GT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14438953 1051 - 49578535 tctaaaagataaatagaaCACACCCTATAT---TATTGTAGCTGGCTGCGGGGTGTCATTGTAGGCTCTTGACCAACAGAGTGATGTGGGGAGAGAAACCGT-GTTGCTTTTCTTGATGGATTTTCATTGCTCCCTCTGCAGTTCCTTGCCAGCCCCTCTGTGGTTAGCAACCTGAAATTGTGAATAGACTAAAGCCCAGAATTAGAGCGAGAGCAGCCAGCCCCAGCGGGGAGTG---AATGTCTGTCCTGGCCAGCATGCGTGCAGGCTGCTGAGGATGTCCGTCGGTGAT--AGAGTTTAT-CCGTGATTGCACCAGCTGAG-CCCCCACCCCAGGCCCCC------------------TCCCCT---ATCATCCACTATGCATGATGAAAAT-----------------TGTTTCCGTCTTCCGGTC-CCTTACGTTTCACCCTCATCTCAGTGTGTTACTTCCTTGGATT-TTTCCCTTGCTTTTCTCTTCTTGGACTGGATGGGGAAGTCTGACAGTTAGATAAACACCTTGCTCTGAATTAAATTCATTCCCACCACAGGGAGGC----------------------------------------------------TCTGCCTGAGGAGAAGCCCGCTCAGGGAAGCCTCTGG-TTCTGGGATGCACCCAGCCCTTGCCCTGCCGGGACATGAGC---------------TCTTCACCTGA-----GCAGCTTGGTGCCCAGCACTGGGCTGCTGTGGGTTTCCAG--------TAAATACTAGCGGTGGATTCATTGACGGGCTGGTC---------CTTGGTTGGCAGCATAGTCCTAAAAGTTTGCTCATGTTTCTTAT-CTGTGTGTTTCTCATAACCTGTG-TGCTGGTGGGAAGCGCGTTAAGTGTCG----------AGTCCAGTCTGCTA-----------------------TGTTGTCATT-TTAAGCATCAGACACTGTGTCTTC--CTTTGTCTTGGTGCTGAGTCGGCACTACTGACTGACGGGC--ATCTTGTGAGTTGTGATTTGT-ACCTGCAGTGAACTGGGCTCCCAGGATACCAGGTGCAGTTCACAGAGC-GCTGCACAAAAACTTGTGACTAACGAACTGCCCCTCACCAAGCCCCGAGGGCGCCGTGGTTTGCTCTGCCAGCCCTCTCCTGTTCATTAGCTTCTCAGGCATAT--CCTGGTTTTGT i calJac3.chr19 I 309 C 0 s mm10.chr1 178922096 1003 + 195471971 -----------CCGAGAGCACATGATA------TAGCGGAGTCAGCAAT--GGAGTCATTACAGACTCTC--------------------AAGAGGAA---------CTTCTGTGAGTAGATTTTCATTGATTC-TCTACAGTTCCTAGCCAG-CCCTCTGTGGTAGGCAGCACAAAACTGTG--CAGCCTAGAGCTCTGAGTTAGAGTGATGAT----AACCTGGCTGGGTGGGGAGTAGTGTCTG-CCCAGCCAGTAGGCATCTAAGTTGCTAAGAG-----------AATATAAA-------TCATCACTGCACCAACCAAG-CCCCCATGTTTAACCC-------------TGCCACATCCCT------------------CTGAAGTCCTTTT---------------TATC-TCACTATCTGATC-CCTTGCATTGTACT---------GTGGGTTACCCTTGCACCTTCTTGCCCTTGCTTGCCGTCTCTTTG-TTTGATGGGGAAGTCTGAGAATT-GACAGGGACCTTGCTCTGAAGGTAGTTCATTCCCATTGCAGGGGGTTTGGCTAGCTGCTACCAGCATCTGGGAAACTTGGG----CTAGAG--GGAGAGGCTGCCTGAAGAGAAGCCA-CGTTGG------------TTATAAGCTACACTCATGCCAGGGCCAGCCTAGCCATAGAT--------------TTCTGCAAT-------ACCTGCTTGGTATCTAGTACTGATAAGGTACAGAGTGCCAC--------TAGGTATCACTGATTGATTCTTTGATTGGTAATTGG----------TGGCTGGCAGTATAGCCTGAAAATGTGTCTCCTGTTTCTTAT-CGAGAGCTTTAGCATATTTTGTCCTATTGGTGATAAGTGTTTTAAATATAGTTTTAAGTGTATTCTAGTCTGCTGGTTTTTGGTTGTCTGTTGGTTGGTTTTGTTTTTATTGTGTACCAAACACTATC----CTTCCTTCTCTTACTGTTGAATAAACATTGACATTGGATAGGCCAGCCCAATAGGCTGCCATTGGCTGCCTGTCGTGAATTA-----------TACC----CCATTTCTCA--GC-ACTATACAGGTGTCTGTGACT----AA-GGACCCTCA--ATGAACTGGAAGTGCCCCAGACTG----------GCTCTGATGATGATCTGATTCTCAGGGGTGTGGCCTGATTTTGT i mm10.chr1 C 0 C 0 s canFam3.chr7 36510967 1017 + 80974532 ----------------------------------ATTGTAG-TGGCAGTGGGGCGTCATTCTAGATTCTTGATCAGGAGTGTGGTAAGGTGAGCAAGGCTGTGGTTGCTTTTACTGATGGATTTTCA----TCCATCCACAGTACATGGCCAG-CCTTCTGTGGTCAGCAACACG------------GCCGCTGGCCGTGAATTAGAGTGGTGACAGCCAGCCTGGGTGGGGAGCA---GAGGTCTGTGCTGGCCAGGGCACGT-TCAGTGATAAAAGG-------ACGTGA---ACAGGGAAGGCCCTTTCTGC----TCGGTG-GCCCCACCCCGAGTCC-TAGGACTTACACTG--ATGCCCTCTGGCATCACTCATCAGGTGTCATGTGGACTCTCCCCAGACACTTAGTATCTTCTTGCTTGTGTC-CTTGACCTTTCACCCCATGCCTACTGTGTTCCCCCCTCGAATTCCTCCCATTGCTCTCCTTCTCCCTGGCTAGCTGGGAAAATCTGAAAACCAGACTGGCACTTTGATCTGAATGAAGTTCGTTCTGACCATAGAAAGCCG-------------GGG---------------------AGGGAAGTGGAGGGCCTGCCCGAAGAGAGGCCA-AGCCAGGGAGCCTGATGGTTCTGGGAGGCACCCAGGGCTTGAGCTGCCTGGATGTGAGCTCCTGCTGGGCCAGTTCTGCACCGGGCCCGGCCTGCCAGGTGCCCA-CACCACACTGGTACCAGTTACTGTGTGTCCACTGGACACCACTGATCGAGTCATTGGCTGGTTGGTTGGCCAATCAGCTGGCTGGCAG-GTGGCCCTA-CAGTTAGCTCCAAGGTCTTTT-TGACATACTTCCC---------CCTGCTGGTGACCCGGGCTTTAGGCACCG----------AGCCCA-TCTTCTATATC-------------------CTTGGCCATG--TAAGCACCAAACGCC-TG----C--CCCTCTCCAGGTGCCAAACAAACTCTACTGTGTGGTGGG----------------------GC----------------------------ACCGGGTTCAGTTTGCAGAGCTGCTGCACTAATATCTGTGGCT----AGTTACTCCTCAACAGGG-CTGAGAGTGCCCTGCTTTGCTCTGCCCACCTTCTACTGCTCACTGGGTCACCAGTTACCA--TCTCGTtttgt i canFam3.chr7 C 0 I 282 a score=419604.000000 s hg38.chr1_KI270759v1_alt 391817 140 + 425601 TTTAATAAATTCAAGCAGCACAGTGATCACTGGCTTAATGAAAACCAGAGGAAGGCAAGCCGCTTGCTGTCAGACTTCAGATTTCCAGAATGTTTCTAAGCGAACCAACCTAGAGCCAGTTGAGAATAGGTTCA--------------------------------------GAATGA------------------------------- s panTro4.chr1 225150043 140 + 228333871 TTTAATAAATTCAAGCAGCACAGTGGTCACTGGCTTAATGAAAACCAGAGGAAGGCAAGCCGCTTGCTGTCAGACTTCAGATTTCCAGAATGTTTCTAAGCGAACCAACCTAGAGCCAGTTGAGAATAGGTTCA--------------------------------------GAATGA------------------------------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226520544 140 - 229942017 TTTAATAAATTCAAGCAGCACAGTGGTCACTGGCTTAATGAAAACCAGAGGAAGGCAAGCCGCTTGCTGTCAGAGTTCAGATTTCCAGAATGTTTCTAAGAGAACCAACCTAGAGCCAGTTGAGAATAGGTTCA--------------------------------------GAATGA------------------------------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140411850 140 - 143122389 TTTAATAAATTCAAGCAGCACAGTGGTCGCTGGCTTAATGAAAACCAGAGGAAGGCAAGCCGCTTGCTGTCAGAGTTCAGAGTTCCAGAATGTTTCTAAGAGAACCAACCTAGAGCCAGTTGAGAATAGGTTCA--------------------------------------GAATGA------------------------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17114184 140 - 229590362 TTTAAAAAATTCTAGCAGCACAGTGGTCACCGGCGTAATGAAAATCAGAGGAAGGCAAGCTGCTTGCTGTCAGAGTTCAGATTTCCAGAATGTTTCCAAGAGAACCAGCCTAGAGCCAGTTGAGAGTAGGTTCA--------------------------------------GAATGA------------------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223878129 140 - 227556264 TTTAAAAACTTCTAGCAGCACAGTGGTCACCGGCGTAATGAAAATCAGAGGAAGGCAAGCCGCTTGCTGTCAGAGTTCAGATTTCCAGAATGTTTCCAAGAGAACCAGCCTAGAGCCAGTTGAGAGTAGGTTCA--------------------------------------GAATGA------------------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16923554 140 - 220367699 tttaaaaaattctagcaGCACAGTGGTCCCCGGCGTAATGAAAATCAGAGGAAGGCAAGCCGCTTGCTGTCAGAGTTCAGATTTCCAGAATGTTTCCAAGAGAACCAGCCTAGAGCCAGTTGAGAGTAGGTTCA--------------------------------------GAATGA------------------------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82725918 140 + 85787240 TTTAATAAATTCTAGCAGCACAGTGGTCACCGGCGTAATGAAAATCAGAGGAAGGCAAGCCGCTTGCTGTCAGAGTTCAGATTTCCAGAATGTTTCCAAGAGAACCAGCCTAGAGCCAGTTGAGAGTAGGTTCA--------------------------------------GAATGA------------------------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14440004 140 - 49578535 CTGAGTAAATTCAAGAAGCACGGTGGTCACTGGCTTAGTGAAAGCCAGAGGAAGGCAAGCTGCTTGCTGGCAGAGTTCAGATTTCCAGAATGTTTCTAAGAGAATCAACCTGGAGACAGCCGAGAACAGGTTCA--------------------------------------GAACGA------------------------------- i calJac3.chr19 C 0 I 311 s mm10.chr1 178923099 187 + 195471971 TGTAATGAGATCAAGAATCATAGTGG---CTGTTTCTAGGAAA--CAGGGGAAGGGA--------GCTGG--------AGGTTGCCAGAGTGCTTCTAAGAGACTCAACCTAGATATAG-AGAGAAAGGGACAAGGTGACAGGACCTGGTCACAGAAGAGAGAGACCGTGGTGAATGAACCTACCCATAGAAGAGAAAGACCAGGGGAA i mm10.chr1 C 0 C 0 e canFam3.chr7 36511984 282 + 80974532 I a score=712981.000000 s hg38.chr1_KI270759v1_alt 391957 266 + 425601 GAGCCTTTTTGAATACACAGTTGGGGGAAAAGGAGGAGAGTCATTGATTCTCTCAGACACCAAGGAAGCTCCTTAGAATAGAACCCCAAAGAGAGTAGGTGGCGCTGATGCTGTGAGATGACACTGT---GGTCCTAGGTGCGGGGTTCGGAATCGCAGAGAACACGGGAGGAAGCCCAGGCTCGGCATCGAGGAGAGCTTTGTGGCCCTGGAGAACCTGCCTCTTTCTCATCCCCAGCACGGGAG-CACTTGCCTTTTCAGCTAAAACA s panTro4.chr1 225150183 266 + 228333871 GAGCCTTTTTGAATACACGGTTGGGGAAAAAGGAGGAAAGTCATTGATTCTCTCAGACACCAAGGAAGCTCCTTAGACTAGAACCCCAAAGACAGTGGGTGGCGCTGATGCTGTGAGGTGGCACTGT---GGTCCTAGGAGCAGAGTTCAGAATCGCGGAGAACATGGGAGGAAGCCCAGGCTTGGCATCGAGGAGAGCTTTGTGGCCCCAGAGAATCTGCCTCTTTCTCATCCCCAGCACGGGAG-CACTTGCCTTTTCAGCTGAAACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226520684 266 - 229942017 GAGCTTTTTTGAATACACAGTTGGGGAAAAAGGAGGAAAGTCATTGATTCTCTCAGACACCAAGGAAGCTCCTTAGAATAGAACCCCAAAGAGAGTAGGTGGCGCTGATGCTGTGAGGTGACACTGT---GGTCCTAGGTGCAGGGTTCAGAATCTCAGAGAACATGGGAGGAAGCCCAGGCTCGGCATCGAGGAGAGCTTTGTGGCCCTGGAGAACCTGCCTCTTTCTCATCGCCAGCATGGGAG-CACTTGCCTTTTCAGCTAAAACA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140411990 266 - 143122389 GAGCCTTTTTGAATACACAGTTGGGGAAAAAGGAGGAAAGTCATTGATTCTCTCAGACACCAAGGAAGCTCCTTAGAATAGAACCCCAAAGAGAGTAGGTGGTGCTGATGCTGTGAGGTGACACTGT---GGCCCTAGGCGCAGGGTTCAGAATCTCAGAGAACATAGGAGGAAGCCCAGGCTCGGCATCAAGGAGAGCTTTGTGGCCCTGGAGAACCTGCCTCTTTCTCATCCCCAGCACGGGAG-CACTTGCCTTTGCAGCTAAAACA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17114324 265 - 229590362 GAGCCTTCTTGATTACACAGTTGGGGAAAAAGGAGGAAAGTCATTGATTCTCTCAGACACCAAGGAAGCTCTTCAGATGAGAACCCCAAGGAGAGTAGGTGGCAGTGATGCTGTGAGGTGGCACTGC---GGT-CTGGGTGCAGGGTTCAGAATCTCGGAGAACATGGGAGGAAGCCCGCGCCCGGCATCGAGGAGAG-TTTGTGGCGCTGGGGCACCTACCTCTTTCTCATCCCTGGCACGCGAGCCATTTGCCTTTTCAGCTACAACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223878269 266 - 227556264 GAGCCTTTTTGATTACACAGTTGGGGAAAAAGGAGGAAAGTCATTGATTCTCTCAGACACCAAGGAAGCTCTTCAGATGAGAACCCCAAGGAGAGTAGGTGGCAGTGATGCTGTGAGGTGGCACTGC---GGTCCTGGGTGCAGGGTTCAGAATCTCGGAGAACATGGGAGGAAGCCCGCGCCCGGCATCGAGGAGAG-TTTGTGGCGCTGGGGAACCTACCTCTTTCTCATCCCTGGCACGCGAGCCATTTGCCTTTTCAGCTACAACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16923694 266 - 220367699 GAGCCTTTTTGATTACACAGTTGGGGAAAAAGGAGGAAAGTCATTGATTCTCTCAGACACCAAGAAAGCTCTTCAGATGAGAACCCCAAGGAGAGTAGGTGGCAGTGATGCTGTGGGGTGGCACTGC---GGTCCTGGGTGCAGGGTTCAGAATCTCAGAGGACATGGGAGGAAGGCCGCGACCGGCATCGAGGAGAG-CTTGTGGCGCTGGGGAACCTGCCTCTTTCTCATCCCTGGCACGCGAGCCATTTGCCTTTTCAGCTAAAACA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82726058 264 + 85787240 GAGCCTTTTTGAATACACAGTTGGGGAAAAAGGAGGAAAGTCATTGATTCTCTGAGACACCAAGGAAGCTCTTCAGATGAGAACCCCAAGGAGAGTAGGCGGCAGTGATGCTGTGAGATGGCACTGC---GGTCCTGGGTGCACGGTTCAGAATCT--GAGAACGTGGGAGGAAGCCCGCGCCCGGCGTCAAGGAGAG-TTTGTGGCGCTGGGGAACCTGCCTCTTTCTCATCCCTGGCACGCAAGCCATTTGCCTTTTCAGCTACAACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14440455 253 - 49578535 GAGCCTTTCTGAATATACAGCGGTGGAAAAAGGGGAAAAGCAATTGATCCTCTAAGACACTGAGGAAGCTTCTTAGAGTAGAACTCCAAAGAGAATAGGTGGCGGTGATGCTGTGAGGTGACACTGT---GGTGCTAGGTGCAGGGTCGAGAATCTCAGAGCACCTTGGACGAAGCCCAGGATCTGCG-----------CTTGTGGC-CTGGGGAG-CTGCCTCTTTCTCATCCGCAGCGTGGGAG-CGTTTACCTTTTCAGCCAAAACA i calJac3.chr19 I 311 C 0 s mm10.chr1 178923286 209 + 195471971 AAGC----TTGAATATATGGTCAAGAGAAGA-CAAAAAAGTGACTG---CCCTATGACAC--AGGAAGCTTTATAAATTAGATCCC---------TAGATG----TGATA----GAGCAGACAATGCCAGGGTCTTGCGGACAGAGT-GAGAATCACAGAGGATAT--GAAGTGGACCAGGCT--GTGTCAGGAGGGA---------ACTGGG---------------TGAGCCCTAGCA---AAG-C-TCTGCCTCTCCATCTAGAGTa i mm10.chr1 C 0 I 368 e canFam3.chr7 36511984 282 + 80974532 I a score=628275.000000 s hg38.chr1_KI270759v1_alt 392223 227 + 425601 TGACAGCAGGCCACACAGCCAGCATCGTTCTTCATCATGGAGCTGGCCCCTTCCTGGTCAACAAAATCACATGGATTGATTCACATTCTCTTTCTCTCTCTGCTCTGAT---ATCTACAGTTCCTTTCAACATTAGTGCCTCGTGC--TTTTTTG----ACTGTCTTCCTAGTGCCTACTCTTTGAATCAGAATGCAGACAGTGGGCGATGGAGC-GAAAGCCATGCTGGAGGGCTC s panTro4.chr1 225150449 230 + 228333871 TGACAGCAGGCCATACAGCCAGCGTCGTTCTTCATCATGGAGCTGGCCCCTTCCTGGTCAACAAAATCACATGGATTGATTCACATTCTCTTTCCCTCTCTGCTCTGATATCATCTACAGTTCCTTTCAACATTAGTGCTTTGTGC--TTTTTTG----ACTGTCTTCCTAGTGCCTACTCTTTGAGTCAGAATGCAGACAGTGGGCGATGGAGT-GAAAGCCATGCTGGAGGGCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226520950 231 - 229942017 TGACAGCAGGCCATACAGCCAGCATCATTCTTCATCATGGAGCTGGCTCCTTCCTGGTCAACAAAATCACATGTATTGATTCACATTCTCTTTCTCTCCCTGCTCTGAT---ATCTACAGTTCCTTTCAACATTAGTGCTTCGTGC--TTTTTTGACTCACTGTCTTCCTAGTGCCTACACTTTGAGTCAGAATGCAGACAGTGGGCGATGGAGC-AAAAGCTATGCTGGAGGGCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140412256 232 - 143122389 TGACAGCAGGCCATACAGCCAGCATCATTCTTCATCATGGAGCTGCCTCTTTCCTGGTCAACAAACTCACATGTATTGATTCACATTCTCTTTCTCTCTCTGCTCTGAT---ATCTGCAGTTCCTTTCAACATTAGTGCTTCGCGC--TTTTTTGACTCACTGTCTTCCTAGTGCCTACACTTTGAGTCAGAATGCAGACAGTGGGCGATGGAGCAGAAAGCTATGCTGGAGGGCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17114589 230 - 229590362 CGACAGCAGGCCACACAGCCAGCATCATTCTTCATCACGGAGCTGGCTCCTTGCTGGTCAATAAAATCACATGTATTGATTCATGTTCTCTTT--CTCTCTGCTCTGAT---ATCTACAGTTCCTTTCAATATTAGTGCTTCGTGC--TTTTTTGACTCACGGTCTTCCTAGTGCCCACACTTTGAGTCGGAATGCAGACAGTGGGTGATGGAGCAGAAAGCTGTGCTGGAGGGCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223878535 230 - 227556264 CGACAGCAGGCCACACAGCCAGCATCATTCTTCATCACGGAACTGGCTCCTTGCTGGTCAATAAAATCACATGTATTGATTCATGTTCTCTTT--CTCTCTGCTCTGAT---ATCTACAGTTCCTTTCAATATTAGTGCTTTGTGC--TTTTTTGACTCACGGTCTTCCTAGTGCCCACACTTTGAGTCGGAATGCAGACAGTGGGTGATGGAGCAGAAAGCTGTGCTGGAGGGCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16923960 232 - 220367699 CGACAGCAGGCCATACAGCCAGCATCATTCTTCATCACGGAGCTGGCTCCTTGCTGGTCAATaaaatcacatgtattgattcatgttctcttt--ctctctgctctgaT---ATCTACAGTTCCTTTCAATATTAGTGCTTCATGCttttttttGACTCACAGTCTTCCTAGTGCCCACACTTTGAGTCAGAATGCAGACAGTGGGTGATGGAGCAGAAAGCTATGCTGGAGGGCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82726322 230 + 85787240 TGACAGCAGGCCATACAGCTAGCGTCATTCTTCATCATGGAGCTGGCTCCTTGCTGGTCAATAAAATCACATGTATTGATTCATGTTCTCTTT--CTCTCTGCTCTGAT---ATCTACAGTTCCTTTCAATATTAGTGCTTCGTGC--TTTTTTGACTCACGGTCTTCCTAGTGCCCACACTTTGAGTCAGAATGCAGACAGTGGGTGATGGAGCAGAAAGCTATGCTGGAGGGCTC i chlSab2.chr25 C 0 I 4 s calJac3.chr19 14440708 221 - 49578535 TGACAACAGGCCATACAGCCAGCGTCATTCTTCCTCATATAGCTGGCTCCTTGCTGGTCAGTAAAACCACATGTATTGACACACATT--------CTCTCTGCTCTGAG---ACTTACAGATCCTTTCAACATGAGTTCTTTGGGC--TTTTCTGAGTCTTCATCTTCCTAGTGCCCACACTCTGAGTCAGAATGCAGGTGGGGGGTGATGGGA--GACAGCTATGCTGCGGGGTC- i calJac3.chr19 C 0 C 0 e mm10.chr1 178923495 368 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I a score=10450.000000 s hg38.chr1_KI270759v1_alt 392450 22 + 425601 TCAGGAGCAGGAGTTTGGGAAT s panTro4.chr1 225150679 22 + 228333871 TCAGGAGCAGGAGTTTGGGAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226521181 22 - 229942017 TCAGGAGCAGGAGTTTGGGAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140412488 22 - 143122389 TTGGGAACAGGAGTTTGGGCAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17114819 4 - 229590362 --------------TTGG---- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223878765 4 - 227556264 --------------TTGG---- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16924192 4 - 220367699 --------------TTGG---- i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14440929 22 - 49578535 TTCGGAGCAGGAGTTTGGGAAT i calJac3.chr19 C 0 C 0 e mm10.chr1 178923495 368 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e chlSab2.chr25 82726552 4 + 85787240 I a score=546047.000000 s hg38.chr1_KI270759v1_alt 392472 181 + 425601 GGGCAGAAGCATATTCCCCAGGGGGAGCTGAGAGGGCTCAGCACTCAGAACACCCATGTTTCCCAACACTTAACCTCAGCAGCAGCATCTGCAGACTCGTGTGGGGACTTCTGTCTGGACTCAGGGATGTTAAGAGTAGAAGGCCCAATGTCAG-CTTCTCACGTGGGCTGTCAGCACCGCA s panTro4.chr1 225150701 181 + 228333871 GGGCAGAAGCATATTCCCCAGGGGGAGCTGAGAGGCCTCAGCACTCAGAACACCCATGTTTCCCAACACTTAACCTCAGCAGCAGCATCTGCAGACTCGTGTGGGGACTTCTGTCTGGACTCAGGGATGTTAAGAGTAGAAGGCCCAATGTCAG-CTTCTCACGTGGGCTGTCAGCACCGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226521203 181 - 229942017 GGGCAGAAGCATATTCCCCAGGGGGAGCCGAGAGGCCTCAGCACTCAGAACACCCATGTTTCCCGACACTTAACCTCAGCAGCAGCATCTGCAGACTCATGTGGGGACTTCTGTCTGGACTCAGGGATGTTAAGAGTAGAAGGCCCAATGTCAG-CTTCTCATGTGGGCTGTCAGCGCCGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140412510 181 - 143122389 GGGCAGAAGCATATTCCCCAGGGGGAGCTGAGAGGCCTCAGCACTCAGAACACCCATGTTTCCCGACACTTCACCTCAGCAGCAGCATCTGCAGACTCGTGTGGGGACTTCTGTCTGGACTCAGGGACGTTAAGAGTAGAAGGCCCAATGTCAG-CTTCCCACATGGGCGGTCAGCGCCGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17114823 181 - 229590362 GGGCAGAAGCATATTCCCCAGGGAGAGCTGAGAGGCCTCAGCACTCAGAACGCCCATGCTTCCCGACACTTAACCTCAGCAGCAGCATCTGCAGACTCGTGTGGGGGCTTCTGTCTGGACTCCGGGATGTTGAGAGTAGAAGACCCAATGTCAG-CTTCTCACGTGGGCTGTCAGTGCTGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223878769 181 - 227556264 GGGCAGAAGCATATTCCCCAGGGAGAGCTGAGAGGCCTCAGCACTCAGAACGCCCATGTTTCCCGACACTTAACCTCAGCAGCAGCATCTGCAGACTCGTGTGGGGGCTTCTGTCTGGACTCCGGGATGTTGAGAGTAGAAGACCCAATGTCAG-CTTCTCACGTGGGCTGTCAGCGCTGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16924196 181 - 220367699 GGGCAGAAGCATATTCCCCAGGGAGAGCTGAGAGGCCTCAGCACTGAGAACGCCCATGCTTCCCGACACTTAACCTCAGCAGCAGCATCTGCAGACTCGTGTGGGGGCTTCTGTCTGGACTCCGGGATGTTGAGAGTAGAAGACCCAATGTCAG-CTTCTCACGTGGGCTGTCAGCGCTGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82726556 181 + 85787240 GGGCAGAAGCATATTCCCCAGGGAGAGCTGAGAGGCCTCAGCACTCAGAACGCTCATGCTTCCCGACACTTAACCTCAGCAGCAGCATCTGCAGACTCGTGTGGGGACTTCTGTCTGGACTCGGGGGTGTTGAGAGTAGAAGACCCGATGTCAG-CTTCTCACGTGGGCTGTCAGCGCTGCA i chlSab2.chr25 I 4 C 0 s calJac3.chr19 14440951 182 - 49578535 GGATGGAAGCATGTTCGCCAGGGGCAGTGGAGAGGCCTCAGCACTCGGCATATCCGTATTTCCTGACACTCACTCTGAGCAGCAGCAGCTGCAGCCTCGGGTGGGGACTTCTGTCTGGACTGGGGGATGTGAAGGGCAGAAGGCCCAATGTCAGACTTCTCACGTGGGCTGTCAGCACCGCA i calJac3.chr19 C 0 C 0 e mm10.chr1 178923495 368 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I a score=144377.000000 s hg38.chr1_KI270759v1_alt 392653 54 + 425601 GATGATACCGGAAGATGGA---CTGTGATGGGCCAGCGACCCCTCTGACTGCACGCA s panTro4.chr1 225150882 54 + 228333871 GATGATACCGGAAGATGGA---CTGTGATGGGTCAGCGATCCCTCTGACTGCACGCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226521384 54 - 229942017 GATGATACGGGAAGATGGA---CTGTGATGGGTCAGCGACCCCTCTGACTGCACGCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140412691 54 - 143122389 GATGATACACGAAGATGGA---CTGTGATGGGTCAGCGACCCCTCTGACTGTACGCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17115004 54 - 229590362 GGTGATCCAGGAAGATGGA---CTGGGATGGGTCCGCCACCCCTCTTACTGCACGCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223878950 54 - 227556264 GGTGATCCAGGAAGATGGA---CTGGGATGGGTCCGCCACCCCTCTTACTGCACGCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16924377 54 - 220367699 GGTGATCCAGGAAGATGGA---CTGGGATGGGTCCGCCACCCCTCTTACTGCACGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82726737 54 + 85787240 GGTGATCCAGGAAGATGGA---CTGGGATGGGTCCGCGACCCCTCTTACTGCACGCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14441133 53 - 49578535 GATGACACAGTGAGGTGGA---CTGTCATGGGCCAGAGACCCCTCTT-CTGTGTGCA i calJac3.chr19 C 0 C 0 s mm10.chr1 178923863 55 + 195471971 ggtgatacctgaagagtaacatctgaggttgacttcaggcctccttg--tgcatgca i mm10.chr1 I 368 I 97 e canFam3.chr7 36511984 282 + 80974532 I a score=241054.000000 s hg38.chr1_KI270759v1_alt 392707 86 + 425601 GCTGTCAGCCAGGCCTGGAACAGGAGGGGCGAGGGGGTGGGCTCAGCCTCTGTTAGTGGGAGAGGTCCTGGTTGGAAGTTTCACTG s panTro4.chr1 225150936 86 + 228333871 GCTCTCGGCCAGGCCTGGAACAGGAGGGGCGAGGGGGTGGGCTCAGCCTCTGTTAGTGGGAGAGGTCCTGGTTGGAAGTTTCACTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226521438 86 - 229942017 GCTGTCAGCCAGGCCTGGAACGGGAGGGGCAAGGGGGTGGGCTCAGCCTCTGTTAGTGGTAGAGGTCCTGGTTGGAAGTTTCACTG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140412745 85 - 143122389 GCTGTCGGCCAGGCCTGGAATGGGAGGGGCGAGGGGGTGGGTTCAGCCTCTGTTAGTGGGAGAGGTCCTGGTTTGAAG-TTCACTG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17115058 85 - 229590362 GCTGTCGGCCAGGCCTGGAACGGGAGGGGCGA-GGGGTGGGCTCAGCCTCTGCTAGTGGGAGAGATCCTGGTTGGAAGTTTCCTTG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223879004 85 - 227556264 GCTGTCGGCCAGGCCTGGAACGGGAGGGGCGA-GGGGTGGGCTCAGCCTCTGCTAGTGGGAGAGGTCCTGGTTGGAAGTTTCCTTG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16924431 85 - 220367699 GCTGTCGGCCAGGCCTGGAACGGGAGGGGCGA-GGGGTGGGCTCAGCCTCTGCTAGTGGGAGAGGTCCTGGTTGGAAGTTTCCTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82726791 85 + 85787240 GCTGTCAGCCAGGCCTGGAACGGGAGGGGCGA-GAGGTGGGCTCAGCCTCTGCTAGTGGGAGAGGTCCTGGTTGGAAGTTTCCTAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14441186 84 - 49578535 GCTGTTGGACAAGCTTGGAAGGGGAGTGGTGACGGGGTGGGCTCAGC--CTGTTAGTGGGTGAGGTCCTGGTTGGAAGCTTCACTG i calJac3.chr19 C 0 C 0 e mm10.chr1 178923918 97 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I a score=1605421.000000 s hg38.chr1_KI270759v1_alt 392793 554 + 425601 AAGTATCAGTGTTGACTTTCTCAGGTCAAATCTGGGCCATTTCATGCGGTAAATCCATGTCGGCAGGTATCAGCCCAAGTGTTTTGAACATGCTGCACTTGTACATGCCTGGACCAAATGCCAGGCTGATGAGCAGGGAGGGGTTGAAAAGCAGAAGGGAGCCCAACCCACCGGCGTCAGCAGGAGGCTGGCCCTGGCTGTG-GCTCCCCGATCAGACAGGCGG------CGTCCAATGGGGCACCACACGACTCCCGCCAGGGTGGGGCTTCC-----CCTGTACCTTTCTTAGAGCTGATGGTCCCCT-GACCCCACTCGCAGCCTGGAAGGAGGGGATCCCTGGCAGAGACCGGGCTTGGCAGAAAACTGGGCAT-CTGCTTGAGAGGTGGAAATGCTGGAGCATGCAGAAAATCTAAGAACCCTTATTTATATGGGGCCCCAGACCAGGACCCTCGGGTCAGTCTTTCTTTGCCCA----GGGATGGCATAGCAGTAACATCGCTTCCTGTGCCCTTTCCAGTAATGTGAGGGCACCATCTCCGCCCCTGAACTCCCTTCAGGCCACT s panTro4.chr1 225151022 550 + 228333871 AAGTATCAGTGTTGACTTTCTCAGGTCAAATCTGGGCCATTTCATGCGGTAAATCCATGTTGGCAGGTATCAGCCCAAGTGTTTTGAACATGCTGCACTTGTACATGCCTGGACCAAATGCCAGGCTGATGAGCAGGGAGGGGTTGAAAAGCAGAAGGGAGCCCAACCCACCGGCATCAGCAGGAGGCTGGCCCTGGCTGTG-GCTCCCCGATCAGACAGGCGG------CGTCCAATGGGGCACCACACGACTCCCGCCAGGGTGGGGCTTCC-----CCTGTACCTTTCTTAGAGCTGATGGTCCCCT-GACCCCACTCGCAGCCTGGAAGGAGGGGATCCCTGGCAGAGACCGGGCTTGGCAGAAAACTGGGCAT-CTGCTTGAGAGGTGGAAATGCTGGAGCATGCAGAAAATCTAAGAACCCTTATTTATATGGGGCCCCAGACCAAGACCCTCGGGTCAG----TCTTTGCCCA----GGGATGGCATAGCAGTACCATCACTTCCTGTGCCCTTTCCAGTAATGTGAGAGCACCATCTCTGCCCCTGAACTCCCTTCAGGCCACT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226521524 550 - 229942017 AAGTATCAGTGTTGACTTTCTCAGGTCAAATCTGGGCCATTTCATGCGGTAAATCCATGTTGGCAGGTATCAGCCCAAGTGTTTTGAACATGCTGCACTTGTACATGCCTGGACCAAATGCCAGGCTGATGAGCAGGGAGGGGTTGAGAAGCAGAAGGGAGCCCAACCCACTGGCATCAGCAGGAGGCTGGCCCTGGCTGTG-GCTTCCCGATCAGACAGGCGG------CATCCAATGGGGCACCGCACGACTCTCGCCAGGGTGGGGCTTCC-----CCTGTACCTTTCTTAGAGCTGATGGTCCCCT-GACCCCACTCGCAGCCTGGAAGGAGGGGATCCCTGGCAGAGACCGGGCTTGGCAGAAAGCTGGGCAT-CTGCTTGAGAGGTGGAAATGCTGGAGCATGCAGAAAATCTAAGAACCCTTATTTATATGGGGCCCCAGACCAAGGCCCTCGGGTCAG----TCTTTGCCCA----GGGATGGCATAGCAGTGCCATCACTTCCTGTGCCCTTTCCAGTAATGTGAGGGCACCATCTCCACCCCTAAACTTCCTTCAGGCCACT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140412830 550 - 143122389 AAGTATCAGTGTTGACTTTCTCAGGTCAAATCTGGGCCATTTCATGCGGTAAATCTGTGTTGGCAGGTATCAGTCTAAGTGTTTTGAACATGCTGCATTTCTACATGCCTGGACCAAATGCCAGGCTGATGAGCAGGGAGGGGTTGAGAAGCAGAAGGGAGCCCGACCCACTGGCATCAGCAGGAGGCTGGCCCTGGCTGTG-GCTCCCCGATCAGACAGGCGG------CATCCAATGGGACACCACGTGACTCTCGCCAGGGTGGGGCTTCC-----CCTGTACCTTTCTTAGAGCTGTTAGTGCCCT-GACCCCACTCGCAGCCTGGAAGGAGGGGATCCCTGGCAGAGACCGGGCTTGGCAGAAAGCTGGGCAT-CTGCTTAAGAGGTGGAAATGCTGGAGCATGCAGAAAATCTAAGAACCCTTATTTATATGGGGCCCCAGACCAAGGCCCTCGGGTCAG----TCTTTGCGCA----GGGATGGCATAGCAGTACCATCGCTTCCTGTGCCCTTTCCAGTAATGTGAGGGCACTATCTCTGCCCCTGAACTTCCTTCAGGCCACT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17115143 550 - 229590362 AAGTATCAGTGTTGACTTTCTCAGGTCAAATCTGGACCATTTCATGTGGTAAATCTATGTTGGCAGGTATCAGCCTAAGTGCTTTGAACATACTGCACTTGTACATGCCTGGACCGGATGCCAGGCTGATGAGCAGGGAGGGGTCGAGAAGCAGGAGGGAGCCCAGCCCACCAGCAGCAGCAGGAGGCTGGCCCTGGCCGTGTGCTCCCCGATCAGACAGGTGG------CATCCAGTGGGGCACCGCACGACTCTCGCCAGGGTGGGGCTCCC-----CCTACACCTTTCTTAGAGCTGATGGTGACCT-GACCCCACTCACAGCCTGGAAGGAGGGGATCCCTGGCAGAGACTGGGCTTGGCAGAAAGCCGGGCAT-CTGCTTGAAAAGTGGAGATGCTGGAGCATGCAGAAAATCTAAGAACACTTATTTATATGGGGCCCCAGACCAAGGTCCTCGGGTCGG----TCTTTGCCCA----GGGATGGCATATCAGTACCATCGCTTCCTGTGCCCTTTCCAGTAACGTGAGGGCACCA-CTCTGCCCCTGAACTGCCTTCAGGGCACT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223879089 550 - 227556264 AAGTATCAGTGTTGACTTTCTCAGGTCAAATCTGGACCATTTCATGTGGTAAATCTATGTTGGCAGGTATCAGCCTAAGTGCTTTGAACATACTGCACTTGTACATGCCTGGACCGGATGCCAGGCTGATGAGCAGGGAGGGGTCGAGAAGCAGGAGGGAGCCCAGCCCACCAGCAGCAGCAGGAGGCTGGCCCTGGCCGTGTGCTCCCCGATCAGACAGGTGG------CATCCAGTGGGGCACCGCACGACTCTCGCCAGGGTGGGGCTCCC-----CCTACACCTTTCTTAGAGCTGATGGTGACCT-GACCCCACTCACAGCCTGGAAGGAGGGGATCCCTGGCAGAGACTGGGCTTGGCAGAAAGCCGGGCAT-CTGCTTGAAAGGTGGAGATGCTGGAGCATGCAGAAAATCTAAGAACACTTATTTATATGGGGCCCCAGACCAAGGTCCTCGGGTCGG----TCTTTGCCCA----GGGATGGCATATCAGTACCATCGCTTCCTGTGCCCTTTCCAGTAACGTGAGGGCACCA-CTCTGCCCCTGAACTGCCTTCAGGGCACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16924516 547 - 220367699 AAGTATCAGTGTTGACGTTCTCAGGTCAAATCTGGACCATTTCATGTGGTAAATCTATGTTGGCAGGTATCAGCCTAAGTGCTTTGAA-ATGCTGCACTTGTACATGCCTGGACCGGATGCCAGGCTGATGAGCAGGGAGGGGTCGAGAAGCAGGAGGGAGCCCAGCCCACCGGCATCAGCAAGAGGCTGGCCCTGGCTGTGTGCTCCCTGATCAGACAGGCGG------CATCCAGTGGGTCACCGCACGACTCTCGCCAGGGTGGGGCTCCC-----CCTACACCTTTCTTAGAGCTGATGGTGACCT-GACCCCACTCACAGCCTGGAAGGAGGAGATCCCTGTCAGAGACTGGGCTTGGCAGAAAGCTGGGCAT-CTGCTTGAAAGGTGGAGATGCTGGAGCATGTAGAAAATATAAGAACCCTTATTTATATGGGGCCCCAGACCAAGGTCCTTGGGTCGG----TCTTTGCCCA----GGGATGGC--ATCAGTACCATCGCTTCCTGTGCCTTTTCCAGTAACGTGAGGGCACCA-CTCTGCCCCTGAACTGCCTTCAGGGCACT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82726876 549 + 85787240 AAGTATCAGTGTTGACTTTCTCAGGTCAAATCT-GACCATTTCAGGCGGTAAATCTATGTTGGCAGGTATCAGCCTAAGTGCTTTGAACATGCTGCACTTGTACATGCCTGGACCGAATGCCAGGCTGATGAGCAGGGAGGGGTCGAGAAGCAGGAGGGAGCCCAGCCCACTGGCATCAGCAGGAGGCTGGCCCTGGGCGTGTGCTCCCCGCTCAGACAGGCGG------CATCCCGTGGGGCACCGCACGACTCTCGCCAGGGTGGGGCTCCC-----CCTACACCTTTCTTAGAGCTGATGGTGACCT-GACCCCACTCACAGCCCGGAAGGAGGGGATCCCTGGCAGAGACTCGGCTTGGCAGAAAGCTGGGCAT-CTGCTTGAAAGGTGGAGATGCTGGAGCATGCAGAAAATCTAAGAACACTTATTTATATGGGGCCCCAGACCAAGGTCCTCGGGTCAG----TCTTTGCCCA----GGGATGGCATATCAGTACCATCGCTTCCTGTGCCCTTTCCAGTAACGTGAGGGCACCA-CTCTGCCCCTGAACTGCCTTCAGGGCACT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14441270 496 - 49578535 AAATATTAGTGTTGACTTTCTCAAGTCAAATCTGGTTCATTTCATGCAGCAAAAAGATGTTGGCAGGTATGAGCCTAAGTGTATTTAATATGCTGCATTTGAACATGCCTGGACTGAATGCCAGGCTGATGAGCCGGGAGAGCTC---AAGGAGAAGGGAGCCTGACCCACCAGCACCAGTAGGAGGCTGGCCCTGGCT----GGTCTGTGGTCAGACAGGCGGCGTCCACGTCCAGTGGGGCACTACATGATTCTCACCAGGGTGGGGCTCCC-----CCC-TAACTTTCTTAGAGCTGATGCTCCCCT-GAGCCCACTT-----------------------------------------------------GCAT-CTGCTTGAGAGGTGGAGCTGCTGGTGCGGGCAGAAAATACAAGGACCCTGCCTTTTATGGGACCCCAGACCAGGGCCCTCGGGCCGG----TCTTTGCCCA----GCAATGGCATCTCGGTATCATCAATTCCTGTGCCCTTTGCAGTAATGTGTGGGCACCGACTCCACCCCGACCCTTCCTTCAGGCCACT i calJac3.chr19 C 0 C 0 s mm10.chr1 178924015 464 + 195471971 AAGTATAAGAGATAAATTTCTTAAACCAATCCTGGCCCA-CTCATGACACAAACTTAGGTGAACAATTATCAACCCAAGTGTTTTT-ACATACCAGATGTCTACATG--TTGACCATGTGCCA-GCTGATGA------------------------------------------------------------------------------------AGGGGCAG------CTTGCAGTGGGGCACTGCAAGACTTCTACTTAGCTTGGATTTTCTACTTCCTGTGGCTTTC-TGTTGCTGACATTACCCTAGATCTCACCAGCAGCCTAGAAGGAAGACAT-CAGGGAAAAAATTGAGTTCAGCA-AAAGTTGAAAATACTACTTCTGAGGTGGTGATGGTGAACCAAGAAGAAAATCCCAGAAATCTTATGTGTGTGGA---CCAGCTCA-GATGCCAGGCCCAA----GTTTCTCTCACAGCAGCATGGCGCAGCAAGGGC-TTGCTTCTGCTGCCCTTGTGAGTAATG-GAAGGCATGCTCTCTGCCTCTGAAATGTCCTGAAGCCACT i mm10.chr1 I 97 I 785 e canFam3.chr7 36511984 282 + 80974532 I a score=975136.000000 s hg38.chr1_KI270759v1_alt 393347 356 + 425601 TCACTCCATTTCCTCAGCCTGACCAC-ATTACCCCTGCCCCAGTACTTGGCTT-CCCTCACCATCACCTAAGTGAAGCTCACATGCACCTCTGGAGGGAGACAGGCGCGGGGAGAGGGAGCCTCAGCTGGAGGTGCAGGAACTGAGTATCAATCCattcacgggattgaggttctggtacccaaattcagaattttacgAAAATCCAAGACACTTGTTCATTCGTGTGCAGG-AAAAAGGTATTCCTAGCCC--CCAAACCACACCTAACCTGACAGTGGGCACTCACTT------------CACCTTGAGAGGG-ATCGATGTGGTGAGGAAGTTCAAGGTTGCTAGATGGCATGGAAAGGAGGCAATGGGAA---- s panTro4.chr1 225151572 352 + 228333871 TCACTCCATTTCCTCAGCCTGCCCAC-ATTACCCCTGCCCCAGTACTTGGCTT-CCCTCATCATCACCTCAGTGAAGCTCACATGCACCTCTGGAGGGAGACAGGCGCGGGGAGAGGGAGCCTCAGCTGGAGGTGCAGGAACTGAGTATCAGTCCATTCACGGGATTGAGGTTCTGGTACCCAAATTCAGAATTTTACAAAAATCCAAGACACTTATTCATTCGTGTGCAGG-AAAAAGGTATTCCTAGCCC--CCAAACCACACCTAACCTGACAGTGGGCACTCACTT------------CACCTTGGGAGGG-ATCGACGTGGTGAGGAAGTTCAAGGTTGCTAGATGGCATGGAAAGGAGGCAATG-------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522074 348 - 229942017 TCACTCCATTTCCTCAGCCTGACCAC-ATTACCCCTGCCCCAGTACTTGGCTT-CCCTCATCATCACC----TGAGGCTCACATGCACCTCTGGAGGGAGACAGGAGTGGGGAGAGGGATCCTCAGCTGGAGGTGCAGGAACTGAGTATCAGTCCATTCACGGGATTGATGTTCTGGTACCCAAATTCAGAATTTTATGAAAATCCAAGACACTTGTTCATTTGTGTGCAGG-AAAAAGGTATTCCTAGCCC--CCAAACCACACCTAACCTGCCAGTGGGCACTCACTT------------CACCTTGGGAGGG-ATCGATGTGGTGAGGAAGTTCAAGGTTGCTAGATGGCGTGGAAAGGAGGCAATG-------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413380 353 - 143122389 TCACTCCGTTTCCTCAGCCTGACCAC-ATTACCCCTGCCCCAGTACTTGGCTT-CCCTCGTCATCACCTAAGTGAGGCTCACATGTACATCTGAAGGGAGACAGGAGCAGGGAGAGGGAGCCTCAGCTGGAGGTGCAGGAACTGAATATCAGTCCATTCACAGGATTGATGTTCTGGTACCCACATTCAGAATTTTACAAAAATCCAAGACACTTGTTCATTCGTGTGCGGGAAAAAAGGTATTCCTAACCC--CCAAACCACACCTAACCTGACAGTGGACACTCACTT------------CACCTTGGGAGGG-GTCAGTGTGGTGAGGAAGTTCAAGGTTGCTAGATGGCATGGAAAGGAGGCAATG-------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17115693 355 - 229590362 TCCCTCCATTTCCTCAGCCTGACCAC-ATTACCCCTGTCCCAGTACTTGGCTTACCCTCATCATTACCTAAGTGAGGCTCACATGCACCTCTGGAGGGAGACAGGCGCGGGGAGAGGGAGCCTCAGCTGGAGGTGCAGGAACGGAATCTCAATCCATTCACGGGACTGATGTTCTGGTACCTAAATTCAAAAGTTTACAAAAATCCAAGACACTTGTTCATTTGTGTGCAGG-AAGAAGGCATTCCTAGCCC--CCAAACCACACCTAACCTGACAGTGGGCACTCACTTCC----------CACCTTGGGAGGG-ATCGATGTGGTGAGGAAGTTCCAGGTTGCTGGATGGCATGGAAAGGAGGCATTG-------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223879639 355 - 227556264 TCCCTCCATTTCCTCAACCTGACCAC-ATTACCCCTGTCCCAGTACTTGGCTTACCCTCATCATCACCTAAGTGAGGCTCACATGCACCTCTGGAGGGAGACAGGCGCGGGGAGAGGGAGCCTCAGCTGGAGGTGCAGGAACGGAATCTCAATCCATTCACGGGGCTGATGTTCTGGTACCTAAATTCAGAAGTTTACAAAAATCCAAGACACTTGTTCATTTGTGTGCAGG-AAGAAGGCATTCCTAGCCC--CCAAACCACACCTAACCTGACAGTGGGCACTCACTTCC----------CACCTTGGGAGGG-ATCGATGTGGTGAGGAAGTTCCAGGTTGCTGGATGGCATGGAAAGGAGGCATTG-------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16925063 354 - 220367699 TCCCTCCATTTCCTCAGCCTGACCAC-ATTACCCCTGTCCCAGTACTTGGCTTACCCTCATCGTCACCTAAGTGAGGCTCACATGCACCTCTGGAGGGAGACAGGCGCGGGAAGAGGGAGCCTCAGCTGGAGGTGCAGGAACAGAGTATCAATCCATTCACGGGACTGATGTTCTGGTACCTAAATTCAGAAGTTTACAAAAATCCGAGACACTTGTTCATTTGTGTGCAGG-AAGAAGGTATTCC-AGCCC--CCAAACCACACCTAACCTGACAGCGGGCACTCACTTCC----------CACCTTGGGAGGG-ATCGATGTGGTGAGGAAGGTCCAGGTTGCTGGGTGGCATGGAAAGGAGGCATTG-------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82727425 364 + 85787240 TCCCTCCATTTCCTCAGCCTGACCAC-ATTACCCCTGCCCCAGTGCTTGGCTTACCCTCATCATCACCTAAGTGAGGCTCACATGCACCTCTGGAGGG-GACAGGCGCGGGGAGAGGGAACCTCAGCTGGAGGTGCAGGAACGGAGTATCAATCCATTCACGGGGCTGCTGTTCTGGTACCTAAATTCAGAAGTTTACAAAAATCCGAGACACTTGTTCATTTGTGTGCAGG-AAGAAGGTATTCCTAGCCC--CCAAACCACACCTAACCTGACAGTGGGCACTCACTTCCCACCTTGGGACACCTTGGGAGGG-ATCAATGTGGTGAGGAAGTTCCAGGTTGCTGGATGGCATGGAAAGGAGGCATTG-------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14441766 354 - 49578535 CCACTCCATTTCCTCAGCCTGACCACAATGGCCCTTGCCCTAGCACCTGGCCT-CCCTCATCACCACCTAAGAGAGGCTCAC-TGTACCTCTGGAGGGAGCCAGG-------AGAGGGAGCCTGGGCTGTAGATGCAAGAACGGAGTATCAATTCCTTTACAGGACTGAGGTTCTGGCTCCCAAATTCAGAATTTTATGGCAATCCAAGACATTCGTTCATTCGTGTGCAGG-AAAAAGGTATGCCGAGCCCCACCAAACCACATCTAACTCGAACTTGGGTGCTCATTTCC----------TGCCTCAGGAGGGAATGGATGTGGCGATGAGGTTCAGTTTTGCCAGATGGCATGGAAAGAAGGCAACG----AGGA i calJac3.chr19 C 0 I 2303 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I a score=41681.000000 s hg38.chr1_KI270759v1_alt 393703 16 + 425601 GGAAGTAGATACCCGC s panTro4.chr1 225151924 16 + 228333871 GGAAGTAGATACCCGC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522422 16 - 229942017 GGAAGTAGATACCCAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413733 16 - 143122389 GGAATTAGATACCTGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17116048 16 - 229590362 GGAATTAGATACCTGC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223879994 16 - 227556264 GGAATTAGATACCTGC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16925417 16 - 220367699 GGAATTGCATACCTGC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82727789 16 + 85787240 GGAATTAGATACCTGC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14444423 16 - 49578535 GGGAGTAGGTACCCAC i calJac3.chr19 I 2303 I 1568 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I a score=177791.000000 s hg38.chr1_KI270759v1_alt 393719 60 + 425601 CAGGATATTTCTGTGAAGCTGTTGTAGCCCAGTGAAATGTCACTCTCCAGGTGTTTTTAC s panTro4.chr1 225151940 60 + 228333871 CAGGATATTTCTGTGAAGCTGTTGTAGCCCAGTGAAATGTCACTCTCCAGGTGTTTTTAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522438 60 - 229942017 CAGGATATTTCTGTGAAGCTGTTGTAGCCCAGTGAAATGTCACTCTCTAGGTGTTTTTAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413749 60 - 143122389 CAGGATATTTCTGTGAAGCTGTCGTAGCCCAGTGAAATGTCACTCTCCAGGTGTTTTTAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17116064 60 - 229590362 CAGGATATTTCTATGAAGCTGTTGTAGCCCAGGGAAATGTCACTCTCCAGGTGTTTTTAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223880010 60 - 227556264 CAGGATATTTCTATGAAGCTGTTGTAGCCCAGGGAAATGTCACTCTCCAGGTGTTTTTAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16925433 60 - 220367699 CAGGATATTTCTATGAAGCTGTTGTAGCCCAGGGAAATGTCACTCTCCAGGGGTTTTTAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82727805 60 + 85787240 CAGGATATTTCTAGGAAGCTGTTGTAGCCCAGGGAAATGTCACTCTCCCGGTGTTTTTAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14446007 58 - 49578535 CAGGATCTTTCTAGGAAGCTGTTGTAGCCCAGTGTAGTGTCACTCTC--AGTGTTTTCAC i calJac3.chr19 I 1568 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I a score=2350.000000 s hg38.chr1_KI270759v1_alt 393779 3 + 425601 CTT- s panTro4.chr1 225152000 3 + 228333871 CTT- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522498 3 - 229942017 CTT- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413809 3 - 143122389 TTT- i nomLeu3.chr5 C 0 T 22 s rheMac3.chr1 17116124 3 - 229590362 TTT- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223880070 3 - 227556264 TTT- i macFas5.chr1 C 0 T 22 s papAnu2.chr1 16925493 3 - 220367699 TTT- i papAnu2.chr1 C 0 T 22 s calJac3.chr19 14446065 3 - 49578535 -TTC i calJac3.chr19 C 0 T 14 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e chlSab2.chr25 82727865 0 + 85787240 C a score=22319.000000 s hg38.chr1_KI270759v1_alt 393782 45 + 425601 CTCTACTCCCAGCTCACACGGTGCCCTGGCACGGGTATTGGCAGG s panTro4.chr1 225152003 45 + 228333871 CTCTACTCCCAGCTCACATGGCGCGCTGGCATGGGTATTGGCAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522501 45 - 229942017 CTCTACTCCCAGCTCACACAGTGCCCTGGCACGGGTATTGGCAGG i ponAbe2.chr1 C 0 C 0 s rheMac3.chr1 17116127 45 - 229590362 CTGTACTCCCATCTCACATGGTGCCCTGGCATGGGTATTGGCAGG i rheMac3.chr1 C 0 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e calJac3.chr19 14446068 14 - 49578535 T e chlSab2.chr25 82727865 0 + 85787240 C e papAnu2.chr1 16925496 22 - 220367699 T e macFas5.chr1 223880073 22 - 227556264 T e nomLeu3.chr5 140413812 22 - 143122389 T a score=1911.000000 s hg38.chr1_KI270759v1_alt 393827 1 + 425601 A s panTro4.chr1 225152048 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522546 1 - 229942017 A i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413790 1 - 143122389 A i nomLeu3.chr5 T 22 C 0 s rheMac3.chr1 17116172 1 - 229590362 A i rheMac3.chr1 C 0 I 52 s macFas5.chr1 223880051 1 - 227556264 A i macFas5.chr1 T 22 C 0 s papAnu2.chr1 16925474 1 - 220367699 A i papAnu2.chr1 T 22 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e calJac3.chr19 14446068 14 - 49578535 T e chlSab2.chr25 82727865 0 + 85787240 C a score=10095.000000 s hg38.chr1_KI270759v1_alt 393828 7 + 425601 CTCTCCA s panTro4.chr1 225152049 7 + 228333871 CTCTCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522547 7 - 229942017 CTCTCCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413791 7 - 143122389 CTCTCCA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223880052 7 - 227556264 CTCTCCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16925475 7 - 220367699 CTCTCCA i papAnu2.chr1 C 0 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e calJac3.chr19 14446068 14 - 49578535 T e rheMac3.chr1 17116173 52 - 229590362 I e chlSab2.chr25 82727865 0 + 85787240 C a score=11648.000000 s hg38.chr1_KI270759v1_alt 393835 12 + 425601 GGTGTTT----TTACC s panTro4.chr1 225152056 7 + 228333871 GGTGTTT--------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522554 16 - 229942017 GGTGTTTGTTTTTACT i ponAbe2.chr1 C 0 T 71 s nomLeu3.chr5 140413798 12 - 143122389 GGTGTTT----TTACT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223880059 12 - 227556264 GGTGTTT----TTACT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16925482 12 - 220367699 GGGGTTT----TTACT i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14446054 12 - 49578535 AGTGTTT----TCACT i calJac3.chr19 T 14 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e rheMac3.chr1 17116173 52 - 229590362 I e chlSab2.chr25 82727865 0 + 85787240 C a score=79448.000000 s hg38.chr1_KI270759v1_alt 393847 47 + 425601 TTCTCTACTCCCAGCTCACACGGTGCCCTGGCACGGGTATTGGCAGG s panTro4.chr1 225152063 47 + 228333871 TTCTCTACTCCCAGCTCACACGGTGCCCTGGCACGGGTATTGGCAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522499 47 - 229942017 TTCTCTACTCCCAGCTCACACAGTGCCCTGGCACGGGTATTGGCAGG i ponAbe2.chr1 T 71 T 67 s nomLeu3.chr5 140413810 47 - 143122389 TTCTCTGCTGCCATCTCACACGGTGCCCTGGCACGGGTATTGGTAGG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223880071 47 - 227556264 TTCTCTACTCCCATCTCACATGGTGCCCTGGCATGGGTATTGGCAGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16925494 47 - 220367699 TTCTCTACTCCCATCTCACATGGTGCCCTGGCATGGGTACTGGCAGG i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14446066 47 - 49578535 TCCTCTACTCCCGTCTCACAGGGTCCCCTGGCAATGGTATTGGCAGG i calJac3.chr19 C 0 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e rheMac3.chr1 17116173 52 - 229590362 I e chlSab2.chr25 82727865 0 + 85787240 C a score=1911.000000 s hg38.chr1_KI270759v1_alt 393894 1 + 425601 A s panTro4.chr1 225152110 1 + 228333871 A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522479 1 - 229942017 A i ponAbe2.chr1 T 67 C 0 s nomLeu3.chr5 140413857 1 - 143122389 A i nomLeu3.chr5 C 0 T 67 s macFas5.chr1 223880118 1 - 227556264 A i macFas5.chr1 C 0 T 67 s papAnu2.chr1 16925541 1 - 220367699 A i papAnu2.chr1 C 0 T 67 s calJac3.chr19 14446113 1 - 49578535 A i calJac3.chr19 C 0 T 60 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e rheMac3.chr1 17116173 52 - 229590362 I e chlSab2.chr25 82727865 0 + 85787240 C a score=9440.000000 s hg38.chr1_KI270759v1_alt 393895 7 + 425601 CTCTCCA s panTro4.chr1 225152111 7 + 228333871 CTCTCCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522480 7 - 229942017 CTCTCTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413791 7 - 143122389 CTCTCCA i nomLeu3.chr5 T 67 C 0 s macFas5.chr1 223880052 7 - 227556264 CTCTCCA i macFas5.chr1 T 67 C 0 s papAnu2.chr1 16925475 7 - 220367699 CTCTCCA i papAnu2.chr1 T 67 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e calJac3.chr19 14446114 60 - 49578535 T e rheMac3.chr1 17116173 52 - 229590362 I e chlSab2.chr25 82727865 0 + 85787240 C a score=16308.000000 s hg38.chr1_KI270759v1_alt 393902 10 + 425601 GGCGTTTTTA s panTro4.chr1 225152118 10 + 228333871 GGTGTTTTTA i panTro4.chr1 C 0 T 63 s ponAbe2.chr1 226522487 10 - 229942017 GGTGTTTTTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413798 10 - 143122389 GGTGTTTTTA i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223880059 10 - 227556264 GGTGTTTTTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16925482 10 - 220367699 GGGGTTTTTA i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14446054 10 - 49578535 AGTGTTTTCA i calJac3.chr19 T 60 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e rheMac3.chr1 17116173 52 - 229590362 I e chlSab2.chr25 82727865 0 + 85787240 C a score=4018.000000 s hg38.chr1_KI270759v1_alt 393912 4 + 425601 CCTT s ponAbe2.chr1 226522497 4 - 229942017 CCTT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413808 4 - 143122389 CTTT i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223880069 4 - 227556264 CTTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16925492 4 - 220367699 CTTT i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14446064 4 - 49578535 CTTC i calJac3.chr19 C 0 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e rheMac3.chr1 17116173 52 - 229590362 I e chlSab2.chr25 82727865 0 + 85787240 C e panTro4.chr1 225152128 63 + 228333871 T a score=78269.000000 s hg38.chr1_KI270759v1_alt 393916 46 + 425601 CTCTACTCCCAGCTCACACGGTGCCCTGGCACGGGTATTGGCAGGA s panTro4.chr1 225152065 46 + 228333871 CTCTACTCCCAGCTCACACGGTGCCCTGGCACGGGTATTGGCAGGA i panTro4.chr1 T 63 C 0 s ponAbe2.chr1 226522501 46 - 229942017 CTCTACTCCCAGCTCACACAGTGCCCTGGCACGGGTATTGGCAGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413812 46 - 143122389 CTCTGCTGCCATCTCACACGGTGCCCTGGCACGGGTATTGGTAGGA i nomLeu3.chr5 C 0 T 46 s macFas5.chr1 223880073 46 - 227556264 CTCTACTCCCATCTCACATGGTGCCCTGGCATGGGTATTGGCAGGA i macFas5.chr1 C 0 T 46 s papAnu2.chr1 16925496 46 - 220367699 CTCTACTCCCATCTCACATGGTGCCCTGGCATGGGTACTGGCAGGA i papAnu2.chr1 C 0 T 46 s calJac3.chr19 14446068 46 - 49578535 CTCTACTCCCGTCTCACAGGGTCCCCTGGCAATGGTATTGGCAGGA i calJac3.chr19 C 0 T 46 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e rheMac3.chr1 17116173 52 - 229590362 I e chlSab2.chr25 82727865 0 + 85787240 C a score=3465.000000 s hg38.chr1_KI270759v1_alt 393962 12 + 425601 CTCTCCAGGTGT s panTro4.chr1 225152111 12 + 228333871 CTCTCCAGGTGT i panTro4.chr1 C 0 I 5 s ponAbe2.chr1 226522547 12 - 229942017 CTCTCCAGGTGT i ponAbe2.chr1 C 0 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e calJac3.chr19 14446114 46 - 49578535 T e rheMac3.chr1 17116173 52 - 229590362 I e chlSab2.chr25 82727865 0 + 85787240 C e papAnu2.chr1 16925542 46 - 220367699 T e macFas5.chr1 223880119 46 - 227556264 T e nomLeu3.chr5 140413858 46 - 143122389 T a score=273.000000 s hg38.chr1_KI270759v1_alt 393974 1 + 425601 T s panTro4.chr1 225152128 1 + 228333871 T i panTro4.chr1 I 5 C 0 s ponAbe2.chr1 226522559 1 - 229942017 T i ponAbe2.chr1 C 0 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e calJac3.chr19 14446114 46 - 49578535 T e rheMac3.chr1 17116173 52 - 229590362 I e chlSab2.chr25 82727865 0 + 85787240 C e papAnu2.chr1 16925542 46 - 220367699 T e macFas5.chr1 223880119 46 - 227556264 T e nomLeu3.chr5 140413858 46 - 143122389 T a score=546.000000 s hg38.chr1_KI270759v1_alt 393975 1 + 425601 T s panTro4.chr1 225152129 1 + 228333871 T i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522560 1 - 229942017 T i ponAbe2.chr1 C 0 I 9 s chlSab2.chr25 82727865 1 + 85787240 T i chlSab2.chr25 C 0 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e calJac3.chr19 14446114 46 - 49578535 T e rheMac3.chr1 17116173 52 - 229590362 I e papAnu2.chr1 16925542 46 - 220367699 T e macFas5.chr1 223880119 46 - 227556264 T e nomLeu3.chr5 140413858 46 - 143122389 T a score=1092.000000 s hg38.chr1_KI270759v1_alt 393976 2 + 425601 TT s panTro4.chr1 225152130 2 + 228333871 TT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522570 2 - 229942017 TT i ponAbe2.chr1 I 9 C 0 s chlSab2.chr25 82727866 2 + 85787240 TT i chlSab2.chr25 C 0 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e calJac3.chr19 14446114 46 - 49578535 T e rheMac3.chr1 17116173 52 - 229590362 I e papAnu2.chr1 16925542 46 - 220367699 T e macFas5.chr1 223880119 46 - 227556264 T e nomLeu3.chr5 140413858 46 - 143122389 T a score=296341.000000 s hg38.chr1_KI270759v1_alt 393978 166 + 425601 CTCTACTCCCATCTCACACGGTGCCCTGGCACGGGTATTGGCAGGAGATGGAGGGTGGCTCTTATCCAAGACATTTTCCCATCTGATCATATCCCATCCgcggtagccaggctccaagatggcccccatg---gtctctgcctcctggtgttcacacccttgtgtagtc s panTro4.chr1 225152132 166 + 228333871 CTCTACTTCCATCTCACATGGTGCCCTGGCACGGGTATTGGCAGGAGATGGAGGGTGGCTCTTATCCAAGACATTTTCCCATCCGATCATATCCCATCCgtggtagccaggctccaagatggcccccatg---gtctctgcctcctggtattcacacccttgtgtagtc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522572 168 - 229942017 CTCTACTCCCATCTCACAGGGTGCCCTGGCATGGATATTGGCAGGAGATGGAGGGTGGCTCTCATCCAAGACATTTTCCCATCTGATCATATCCCATCCgtggtagccaggctccaagatggcccccatggttgtctctgcctcccggtattcacacccttgtgtag-c i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413812 166 - 143122389 CTCTGCTGCCATCTCACACGGTGCCCTGGCACGGGTATTGGTAGGAGATGGAGGGTGGCTCTCGTCCAAGACATTTTCCCATCTGATCACATCCCATCtgtggtcaccaggctccaagatggcccccgtg---gtctctgcctcctggtattcacacccttgtgtagtc i nomLeu3.chr5 T 46 C 0 s macFas5.chr1 223880073 102 - 227556264 CTCTACTCCCATCTCACATGGTGCCCTGGCATGGGTATTGGCAGGAGATGGA-----------------------------------------------gtggtagccaggctccaagatggcccccatg---gtctctgcc--------ttcacaccct--------- i macFas5.chr1 T 46 C 0 s papAnu2.chr1 16925496 149 - 220367699 CTCTACTCCCATCTCACATGGTGCCCTGGCATGGGTACTGGCAGGAGATGGAGGGTGGCCCTCGTCCCAGACATTTTCCCATCTGATCACGTCCCATCCGTGGTAGCCAGGCTCCAAGATGGCCCCCATG---GTCTCTGCC--------TTCACACCCT--------- i papAnu2.chr1 T 46 C 0 s chlSab2.chr25 82727868 149 + 85787240 CTCTACTCCCATCTCACACAGTGCCCTGGCATGGGAATTGGCAGGAGATGGAGGGTGGCCCTCGTCCCAGACATTTTCCCATCTGATCACGTCCCATCCgtggtagccaggctccaagatggcccccatg---gtctctgcc--------ttcacaccct--------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14446068 164 - 49578535 CTCTACTCCCGTCTCACAGGGTCCCCTGGCAATGGTATTGGCAGGAGATTGAGGGTGGCCCTCATCCAAGATACTTTCCCGTCAGATCATATCCCATCCAtggaagccaggctccatgatggccccct-----gtctctgcctccaggtattcacacccttgagtagtc i calJac3.chr19 T 46 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e rheMac3.chr1 17116173 52 - 229590362 I a score=1076958.000000 s hg38.chr1_KI270759v1_alt 394144 419 + 425601 ccctcccgtatttaccagagttggtctc--tgttgagtgaggtaaggcagagtgatggtatgtcactttcaaaagtaggttataaaagacactgcaccttctgtgctgggtgcccctcttgctttcttgggtcattccctctgggggatgccagctgccatgtcataaatagtcctgtgtaggagaggcctgcatggcaatgaactaaagcctcctgccatgatgacatgagtgagcttagaaatggaagcttcaacctcagtcaagccttcagatgagtgcagccctagctgacagcttgcctgcgact-ccgagaggctctgag--cc--agaaccacctggcaaaaattgctcccagattcccaacccacagggatatgtgagatcaatgtttgttgttttagccgctgggtttggggtttat s panTro4.chr1 225152298 419 + 228333871 ccctcccgtatttaccagagttggtctc--tgtcgagtgagataaggcagagtgatggtatgtcactttcaaaagtaggttataaaagacactgcagcttctgtgctgggtgcccctcttgctttcttgggtcattccctctgggggatgccagctgccatgtcatcaatagtcctgtgtaggagaggcctgcatggcaatgaactaaagcctcctgccatgatgacatgagtgagcttagaaatggaagcttcagcctcagtcaagccttcagatgagtgcagccctagctgacagcttgcctgtgact-ccaagaggctctgag--cc--agaaccacctggcaaaaattgctcccagattcccaacccacagggatatgtgagataaatgtttgctgttttagccgctgggtttggggtttat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226522740 421 - 229942017 ccctcccgtatttaccagagttggtctctgtgtcgagtgggataaggcagagtgatggtatgtcactttcagaagtaggttataaaagacactgcagcttctgtgctgggtgcccctcttgctttcttgggtca-tccctctgggggatgccagctgccatgtcataaatagtcctgtgtagcagaggcctgcatgaggatgaactaaagcctcctgccatgatgacatgagtgagcttagaaacgggagcttcagcctcagtcaagccttcagatgagtgcagccctagctgacagcttgcctgcaactcccgagaggctctgag--cc--agaaccacctggcaaaaattgctcccagattcccaacccacagggatatgtgagataaatgtttgctgttttagccgctgggtttggggtttat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140413978 420 - 143122389 ccctcccatattgaccagagttggtctctgtgtcgagtgggataaggcagagtgattgtatgtcactttcaaaagcaagttataaaagacactgcagcttctgtgctgggtgcccctcttgctttcttgggtcattccctctgggggatgccagctgccatgtcataaatagtcctgtgtaggagaggcctgcatggcaatgaactaaagcctcctgccatgatgacatgagtgagcttagaaacggaagtctcagcctcagtcaagccttcagatgagtgcagccctagctgacagcttgcctgcgact--tgagaggctctgag--cc--agaagcacctggcaaaaattgctcccagattcccaacccacagggagatgtgagataaatgtttgctgttttagccgctgggtttagggttcat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17116225 411 - 229590362 ccctcctgcatttcccagagctggtctctgtgttgagtgggatgtggcagcgtgacagtatgtcactttcataagcaggttatacaagacgctgcagcttctgtgctgggtgcccctcgtgctctcttgggtcactccctctgggggaagccagctgccatgtcacaaacagtcccgtgcaggagaggcctgcgtggcagtgaactaaagcctcccgccgtgatgacatgagcgagcttagaaacggaagctgcagcctcagtcaagccttcagatgagtgcagccccagctg--------------actcctgagaggccctgagaacctgagaaccacctggcgaaaactactcccagattccc-acccacaggaatatgtgagatgaatatttgctgttttcgccacagggtttgggattaat i rheMac3.chr1 I 52 C 0 s macFas5.chr1 223880175 407 - 227556264 ----cctgcatttcccagagctggtctctgtgtcgagtgggatgtggcagcgtgacggtatgtcactttcataagcaggttatacaagacgctgcagcttctgtgctgggtgcccctcgtgctctcttgggtcactccctctgggggaagccagctgccatgtcacaaacagtcccgtgcaggagaggcctgcgtggcagtgaactaaagcctcccgccgtgatgacatgagcgagcttagaaacggaagctgcagcctcagtcaagccttcagatgagtgcagccccagctg--------------actcctgagaggccctgagaacctgagaaccacctggcgaaaactactcccagattccc-acccacaggaatatgtgagatgaatatttgctgttttcgccacagggtttggggttaat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16925645 387 - 220367699 ----CCTGTATT------------TCTCTGTGTCGAGTGGGATGTGGCAGTGTGACGGTATGTCACTTTCATAAGCAGGTTATACCAGACGCTGCAGCTTCTGTGCTGGGTGCCCCTCGTGCTCTCCTGGGTCATTCcctctgggggaagccagctgccatgtcacAAACAGTCCCGTGCAGGAGAGGCCTGCGTGGCAGTGAACTAAAGCCTCCCGCCGTGATGACATGAGCGAGCTTAGAAACGGAAGCTGCAGcctcagtcaagccttcagatgagtgCAGCCCCAGCTG--------------ACTCCTGAGAGGC--------CCTGAGAACCACCTGGCGAAAACTACTCCCAGATTCCC-ACCCACAGgaatatgtgagatgaatgttTGCTGTTTTTGCCACTGGGTTTGGGGTTAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82728017 407 + 85787240 ----cctgtatttcccagagttggtctctgtgtcgagtgggatatggcagcgtgacagtatgtcactttcataagcaggttatacaagacgctgccgcttcggtgctgggtgcccctcgtgctctcttgggtcattccctctgggggaagccagctgccatgtcacaaacagtcccgtgcaggaaaagcctgcgtggcagtgaactaaagcctcctgccatgatgacatgagcaagcttagaaacagaagctgcagcctcagtcaagccttcagatgagtgcagccccagctg--------------actcctgagaggccctgagaacctgagaaccacctggcaaaaactactcccagattcct-acccacaggaatatgtgagataaatgtttgctgttttcgccactgggtttggggttaat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14446232 400 - 49578535 ccctcccctatttaccagagtttgtctctgtgtccagtgggataaggcagagtgatggcatgtcactttcaagaggaagtc-----agacactgcagctactgtgctgggtggccctctggcattcttgggtt-ctccctctggaagaagccagctgccaggtcatacacagtctttt---ggagagatctgcatggcagtgaactaaggcctcctaccatgatgtcatgagtgagcttagaaacagaagcttcagcctcagtca------------agtgcagccacagctgacagcctccctgtgactcctgagaggccctgag--cc--acaaccacctggcaaaaattgctcccagattcccaacccacaggactatgtgaaatacatgtttcctg-tttagctgctgggtttggggttcat i calJac3.chr19 C 0 C 0 e mm10.chr1 178924479 785 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I a score=34382.000000 s hg38.chr1_KI270759v1_alt 394563 13 + 425601 ttgttacacagca s panTro4.chr1 225152717 13 + 228333871 ttgttacacagca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226523161 13 - 229942017 ttgttacacagca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140414398 13 - 143122389 ttgttatgcagca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17116636 13 - 229590362 ttgttacccacca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223880582 13 - 227556264 ttgttacccacca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16926032 13 - 220367699 TTGTTAACCACCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82728424 13 + 85787240 ttgttacccacca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14446632 13 - 49578535 ttgttacacagca i calJac3.chr19 C 0 I 440 s mm10.chr1 178925264 13 + 195471971 TTGTTTCAGGGCT i mm10.chr1 I 785 C 0 e canFam3.chr7 36511984 282 + 80974532 I a score=661287.000000 s hg38.chr1_KI270759v1_alt 394576 236 + 425601 GCCATTT---------------------GGAAGCTAGAGTTGAGGCACACAGAAGCTAAACAGTTTGCCAACAAACAGTCAGCTAGCTTGATCAGACTGATTTAAAAGAAAAAA-ACC---CCTCTGATCTGGTCCCTTCCCAGGGTAGGTGTCTC--ACG---CTAAGGAGACAGACATTTGCTTTATTCCCGT-GGTCGATGTTACTTAGTTTCGTTAGTTGGGGCCTGCACTTTGTTGGAAACTAAATGCGATTGTGTATGTGT s panTro4.chr1 225152730 228 + 228333871 Gccattt---------------------ggaaggtagagttgaggcacacagaagctaaacagtttgcc----aacagtcagctagctTGATCAGACTGATTTAAAAGAAAAAA-ACC---CCTCTGATCTGGTCACTCCCCAGGGTAGGTGTCTC--ACG---CTAAGGAGACAGACATTTGCTTTATTCCCGT-GGTTGATG----TTAGTTTCGTTAGTTGGGGCCTGCACTTTGTTGGAAACTAAATGCGATTGTGTATGTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226523174 232 - 229942017 gccattt---------------------ggaagctaGAGTTGAGGCACACAAAAGCTAAACAGTTTGCC----AACAGTCAGCTAGCTTGATCAGACTGATTTAAAAGGAAAAA-ACC---CCTCTGATCTGGTCACTTCCCAGAGTAGGTGTCTC--ATG---CTAAGGAGACAGACATTTGTTTTATTCCTGT-GGTCGATGTTGCTTAGTTTCGTTAGTTGGGGCCTGCACTTTGTTGGAAACTAAATGCGATCGTGTATGTGT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140414411 234 - 143122389 gcca-tt---------------------ggaagctaGAGTTGAGGCACACAAAAGCCAAACAGTTTGCC----AACAGTCAGCTAGCTTGATCAGACTGATTTAAAAAGAAAAACACC---CCTCTGATCTGGTCACTTCCCAGGGTAAGTGTCTCAGACG---CTAAGGAGACCGACATTTGCTTTATTCCCGT-GGTCGATGTTGCTTAGTTTCGTTAGTTGGGGCCTGCACTTTGTTGGAAACTAAATGTGATGGTGTATGTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17116649 258 - 229590362 GCCGTTTCACAGGTTCCTTCCATGGGACAGAAGCTAGAGTTGAGGCACAGAAAAGCTAAACAGTTTGCC----AACAGTCAGCTAGCTTGATCAGACTGATTTAAAATAAAAAA-CCCAAAACTCTGCTCTGGTCACTTCCCAGGGTAAGTGTCTCAGACA---CTAAGGAGACAGACAGTTGCTTTATTCCAGT-GGTCGATGTTGCTTAGTTTCATTAGTTGGGGCCTGCACTTTGTTGGAAACTAAACGTGATTGTGTATGTGT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223880595 258 - 227556264 GCCGTTTCACAGGTTCCTTCCATGGGacagaagctagagttgaggcacagaaaagctaaacagtttgcc----aacagtcagctagctTGATCAGACTGATTTAAAATAAAAAA-CCCAAAACTCTGCTCTGGTCACTTCCCAGGGTAAGTGTCTCAGACA---CTAAGGAGACAGACAGTTGCTTTATTCCAGT-GGTCGATGTTGCTTAGTTTCATTAGTTGGGGCCTGCACTTTGTTGGAAACTAAACGCGATTGTGTATGTGT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16926045 258 - 220367699 GCCGTTTCACAGGTTCCTTCCATGGGACAGAAGCTAGAGTTGAGGCACAGAAAAGCTAAACAGTTTGCC----AACAGTCAGCTAGCTTGATCAgactgatttaaaataaaaaa-cccaaaactctGATCTGGTCACTTCCCAGCGTAAGTGTCTCAGACA---CTAAGGAGACAGACAGTTGCTTTATTCCAGT-GGTCGATGTTGCTTAGTTTTGTTAGTTGGGGCCTGCACTTTGTTGGAAACTAAACgtgattgtgtatgtgt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82728437 258 + 85787240 GCCGTTTCACAGGTTCCTTCCATGGGacagaagctagagttgaggcacagaaaagctaaacagtttgcc----aacagtcagctagctTGATCAGACTGATTTAAAATAAAAAA-CCCAAAACTCTGATCTGGTCACTTCCCAGGGTAAGTGTCTCAGACA---CTAAGGAGACAGACAGTTGCTTTATTCCAGT-GGTCGATGTTGCTTAGTTTCGTTACTTGGGGCCTGCACTTTGTTGGAAACTAAACGCGATTGTGTATATGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14447085 229 - 49578535 GCCACAT------------------GATAGACGCCAGAGTTGAGGCACACA------AAACAGTTTGCT----CATAGTCAGCTACCTTGATCAGTCCGACTTAAAGGAGAAAA-ACA---ACTATGACCTGGT-GTTTCTCATGGCGAATGTCTTAGCCA---AGCAGGAGAC--ACGCTTGCTTTCTTCCAGTGGGTTGGGGTTTCTCAGTTTCATTAGTCGGGGCCTGCACTTCGCTGGAAGCTAAATACAACTGTGTATGTGT i calJac3.chr19 I 440 C 0 s mm10.chr1 178925277 233 + 195471971 cccagtt------------------cacagaggctggagctgagacacagagtaatagaacagcttgcc----gggagtcaGCTGGCTTGGGCAGGC---TTTAAAAAACAACA-GCC-----CATTATCTGATTTGTTCCCATA-TAAAGGTGTTAGATAGACCCTAAGAGACAG-CATTTGCTTTGCCCCTGG-GGTTGATGTTCCTTGGTCTCATAGATCACTGCCTGCACTTTATTGAAGGgtgtgtgtgtgtgtgtgtgtgt i mm10.chr1 C 0 I 2644 e canFam3.chr7 36511984 282 + 80974532 I a score=753394.000000 s hg38.chr1_KI270759v1_alt 394812 289 + 425601 CTACACAAG----ATCAA-ATCTGGGCTCTAAAAAGTGAGGTTTTggccgggcacagtggctcatgcctgtaatcccaacactttgggaggctgaggcaagtggatcatttgagatcaggcgttcgagaccagtctggccaacatcgtgaaa----ccctgtctctactaaaaatacaaaaaattagccgtgcgtggtagcgggcgcctgtagtcccagctacttgggaggctggggcaggagaattgattgaacccagcaggcagaggctgcagtgacctgagatcacaccactgca s panTro4.chr1 225152958 289 + 228333871 ATACACAAG----ATCAA-ATCTGGGCTCTAGAAAGTGAGGTTCTggccgggcacagtggctcatgcctataatcccaacactttgggaggctgaggcaagcggatcacttgagatcaagagtttgagaccagtctagccaacatcgtgaaa----ccctgtctctactaaaaatacaaaaaattagccgtgcgtggtagcgggcacctgtagtcccagctactagggaggctggggcaggagaattgattgaacccagcaggcagaggctgcagttacctgagatcacaccactgca i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226523406 293 - 229942017 ATACACAAG----ATCGA-ATCTGGGCTCTAAAAAGTGAGGTTTTggccaggcacagtggctcacgcctgtaatcccaacattttgggaggctgaggcaagcggatcacttgagatcaggagtttgagaccagtctggccaacattgtgaaaccctccctgtctctactaaaaatacaaaaaattagccgggcgtggtagcgggcgcctgtagtcccagctacttgagaggctggggcaggagaattgattgaacccagcaggcagaggctgcagtgacctgagatcacaccactgca i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140414645 293 - 143122389 ATACACAAGTCAAGTCAA-CTCTGGGCTCTAAAAAGTGAGGTTTTggccgggcacagtggctcacgcctgtcatcccaacactttgggaggctgaggcaagctgatcacttgagatcaggagtttgcgaccagcctggccaacatcgtgaaa----ccccgtctctactaaaaatacaaaaaattagccgggcgtggtagcgggcgcctgtagtcccagctacttgggaggctggggcagcagaattgattgaacccagcaggcggaggctgcagtgacctgagatcacaccactgca i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17116907 279 - 229590362 ATACATAAG----ATCAA-ATCTGGGCTCTAAAAAGTGAGGTTTTggccgggtgcggtggctcacgcctgtaatcccaacactttgggcggctgaggcaagcgggtcacttgttgccaggagttcgagaccatcctgcccaacacggtgaaa----ccctgtctctactaaaaatacgaaaaattagttgggcgtggtggc-cgcgcctgtagttccaggtactcgggaggcagaggcaggg---------aaacccagcaggtggaggttgcagtgagctgagatcatgccactgca i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223880853 279 - 227556264 ATACATAAG----ATCAA-ATCTGGGCTCTAAAAAGTGAGGTTTTggcagggtgcggtggctcacgcctgtaatcccaacactttgggaggctgaggcaagcggatcacttgagaccaggagttcgagaccatcctggccaacacggtgaaa----ccctgtctctactaaaaatacaaaaaattagttgggcgtggtggc-ggcgcctgtagttccaggtactcgggaggcagaggcaggg---------aaacccagcaggtggaggttgcagtgagctgagatcatgccactgca i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16926303 280 - 220367699 atacataag----aTCAA-ATCTGGGCTCTAAAAAGTGAggttttggccgggtgcagtggctcacgcctgtaatcccaacactttgggaggctgaggcaagcgtatcacttgagaccaggagttcgagaccatcctggccaacacggtgaaa----ccctgtctctactaaaaatacaaaaaattagttgggcgtggtggcaggcgcctgtagtcccaggtactcgggaggcagaggcaggg---------gaacccagcaggtggaggttgcagtgagctgagatcatgccactgca i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82728695 289 + 85787240 AAACATAAG----ATAAA-ATCTGGGCTCTAAAAAGTGAGGTTTTggctgggtgcggtggctcacgcctgtaataccagcactttgggaggctgagacaagcagatcacttgagaccaggagttcgagaccatcttggccaacacagtgaaa----ccctgtctctactaaaaacacaaaaaattagtcgggcgtggtagtgcctgcctggagtcccagctactcgggaggcggaggcaggagaattgattgaacccaacaggtggaggttgcagtgagctgagatcatgccactgca i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14447314 288 - 49578535 ATACACAAG----ATAAAGATCTGGGCTCTAAACACTGAAATTTTggccaggcacagtggctcatgcctgtaatcccagcactttgagaagctcagacaagtggttcatttgaggtcaagagttcaagaccatcctggccaacatggtgaaa----ccctgtctatatgaaaa--accaaaaattagctgggtgtggaggtgggcatgtttaatcccagctactcgggtggctgaggcaggagagtcacttgaacccaggaggcggaggttgcagtgagccaagatggcaccattgca i calJac3.chr19 C 0 C 0 e mm10.chr1 178925510 2644 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I a score=401977.000000 s hg38.chr1_KI270759v1_alt 395101 170 + 425601 ctccagcctgggcgacagagtgagactccctctcaaaaaCAGTGAGGTTTAATATGAAGCAAAAGGAGCTCGGAGCCCAGAGTTCACTCCATAGAGAAAATTAACACAGCAGTGAGTGCCCCTTGTTGTCTCCTGGAGGAGGCATGCTTCAGCTGGCATCTGCTCATCAA s panTro4.chr1 225153247 170 + 228333871 ctccagcctgggcgacagagtgagactccccctcaaaaaaaGTGAGGTTTAATATGAAGCAAAAGGAGCTCGGAGCCCAGAGTTCACTTCATAGAGAAAATTAACACAGCAGTGAGTGTTCCTTGTTGTCTCCTGGAGGAGACATGCTTCAACTGACATCTGTTCATCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226523699 170 - 229942017 ctccagcctgggtgacagagtgagactccctctcaaaaaaaGTGAGGTTTAATATGAAGCAAAAGGAGCTCGGAGCCCAGAGTTCACTTCATAGAGAAAATGAACACAGCAGTGAGTGTTCCTTGTTGTCCCCTGGAGGAGACATGCTTCAACTGACATCTGTTCATCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140414938 170 - 143122389 ctccagcctgggcgacagagtcagactccctctcaaaataaGTGAGGTTTAATATGAAGCAAAAGGAGCTCGGAGCCCAGAGTTCACTTCATAGAGAAAATTAACACAGCAGTGAGCGTTCCTTGTCGTCTCCCGGAGGAGACATGCTTCAACTGACATCCGTTCATCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17117186 170 - 229590362 ctccagcctgggcgacaaagtgagacaccctgtcaaaaaaaGTGAGATTTAATATGAAGCAAAAGGAGCTCAGATCCCTGAGTTCACTTCATAGAGAAAATTAACACAGTAGTGAGCATTCCTTGTTGTCTTCTGGAGGAGACATGCTTCAACTGACATTTGTTCATCAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223881132 170 - 227556264 ctccagcctgggcgacaaagtgagactccctgtcaaaaaaaGTGAGATTTAATATGAAGCAAAAGGAGCTCAGATCCCTGAGTTCACTTCATAGAGAAAATTAACACAGTAGTGAGCATTCCTTGTTGTCTTCTGGAGGAGACATGCTTCAACTGACATTTGTTCATCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16926583 170 - 220367699 ctccagcctgggcgacaaagtgagattcccTGTCaaaaaaaGTGAGATTTAATATGAAGCAAAAGGAGCTCAGATCCCCAAGTTCACTTTATAGGGAAAATTAACACAGTAGTGAGCGTTCCTTGTTGTCTTCTGGAGGAGACATGCTTCAACTGACATTTGTTCATCAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82728984 170 + 85787240 ctccagcctgggcgacaaagtgagactccctgtcaaaaaaaGTGAGATTTAATATGAAGCAAAAGGAGCTCAGATCCGTGAGTTCACTTCATAGAGAAAATTAACACAGTAGTGAGCGTTCCTTGTTGTCTTCTGGAGGAGACATGCTTCAACTGACATTTGTTCATCAA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178925510 2644 + 195471971 I e canFam3.chr7 36511984 282 + 80974532 I e calJac3.chr19 14447602 0 - 49578535 C a score=975724.000000 s hg38.chr1_KI270759v1_alt 395271 405 + 425601 AACGTCAGTCCCCTGT-ACCATGCAAGAGTTtagtctccattctgggagccatgtgcttcact----aatacccagggtctcttctgctgtgaaagaaagaggatagata-ctgggagaga--actagccgtcctcgtcacaACGTGTGAAGTGTGTGAAATAGTACCAGGCACGTAACCAGTGCATGTGA--GTGCTACTGCTGCTGTTATAAGCAAATAAACAGTGTTTTCTGGAACTCCTGTAATGACATCAAATGCTAGGACCTTTTGACC-----------------------------------TATCCATGCTGAGGATG-CCCC-----------------CTAGGCTGCG-TGTTTTACAGGTGGAAACTAGGAGGCGGTTCTAAAGATTCCTCAGGGAGTTTGCTGAGCTAAAGCCCAAGTGTTGGTTTAggggagtagaggtggaggtgggtggtggg s panTro4.chr1 225153417 409 + 228333871 AACTTCAGTCCCCTGT-ACCATGCAAGAGTTtagtctccattctgggagccatgtgcttcactaataaatacccagggtctcttctgctgcgaaagaaagaggatagata-ctgggagaga--actagcagtcctcgtcacaATGTGTGAAGCGTGTGAAATAGTACCAGGCACGTAACCAGTGCATGTGA--GTGCTACTGCTGCTGTTATAAGCAAATAAACAGTGTTTTCTGGAACTCCTGTAATGACATCAAACGCTAGGACCTTTTGACC-----------------------------------TATCCATGCTGAGGATG-CCCC-----------------CTAGGCTGCA-TGTTTTACAGGTGGAAACTAGGAGGCAGTTCTAAAGATTCCTCAGGGAGTTTGCTGAGCTAAAGCCCAAGTGTTGGTTTAGGGGAGTAAAGGTGGAGGTGGGTGGTGGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226523869 406 - 229942017 AACTTCAGTCGCCTGT-ACCATGCAAGAGTTtagtctccattctgggagccatgtgcttcact----aatacccagggtctcttctgctgagaaagaaagagaatagata-ctgggagaga--actagcagtccttgtcacaATGTGTGAAGCGTGTGAAATAGTACCAGGCACGTAACCAGTGCATGTTA--GTGCTGCTGCTGCTGTTATAAGCAAATAAACAGTGTTTTCTGGAACTCCTGTAATGACATCAAACGCTAGGACCTTTTGACC-----------------------------------TATCCATGCTGAGGATGCCCCC-----------------CTAGGCTGCA-TGTTTTACAGGTGGAAACTAGGAGGCAGTTCTAAAGATTCCTCAGGGAGTTTGCTGAGCTAAAGCCCAAGTGTTGGTTTAGGGGAGTAAAAGTGGAGGTGGGTGGTGGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140415108 403 - 143122389 AGCTTCAGTCCCCTGTAACCATGCAAGTGTTtagtctccattctgggagccatgtgcttcact----aatacccagggtctcttctgctgagaaagaaagagaatagaca-ctgggagaga--actagcagtccttgtcacaATGTGTGAAGCATGTGAAATAGTACCAGGCACGTAACCAGTGCATGTTA--GTGCTGCTGCTGCTGTTTTAAGCAAAT----AGTGTTTTCTGGAACTCCTGTAATGACATCAAACGCTAGGACCTTTTGACC-----------------------------------TAACCATGCTGAGGATG-CACC-----------------CTAGGCTGCAGTGTTTTACAGGTGGAAACTAGGAGGCAGTTCTAAAGATTCCTCAGGGAGTTTGCTGAGCTAAAGCCCAAGTGTTGGTTTAGGGGAGTAAAGGTGGAGGTGGGTGGTGGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17117356 419 - 229590362 CACTGCAGTCCCCTGT-GCCATGCAAGAGTTTAGTCTCCATTCCGGGAGCCTTGTGTTTCACT----AATACCCAGGGTCTCTTCTGCTGAGAAAGAAAGAGAATAGATA-CTGGGAGAGAGCACTGGCAGTGCTTGTCACAGTGtgtgaagcatgtgaaatagtgcctggcacataaccggcgcATGTCA--GTG---CTGCTGCTGTTACAAGCAAATCGACAGTGTTTTCTGGAACTCCTGTAATGACATCAAACGCTCGGACCTTTTGACC-----------------------------------CATCCATGCTGAGGATG-TGCC-AGTGTGGCTCACAGGTCTAAGCTGCA-TGTTTCACAGGTGG-AACTAGGAGGCAGTTCTAAAGATTCCCCTGGGAGTTGGCTGAGCTAAAGCCCAAGTGTCGGCTTAGGGGAGGAGAGGTGGAGGTGGGTGGTGGG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223881302 419 - 227556264 CACTGCAGTCCCCTGT-GCCATGCAAGAGTTTAGTCTCCATTCCGGGAGCCTTGTGTTTCACT----AATACCCAGGGTCTCTTCTGCTGAGAAAGAAAGAGAATAGATA-CTGGGAGAGAGCACTGGCAGTGCTTGTCACAGTGtgtgaagcatgtgaaatagtgcctggcacgtaaccggcgcATGTCA--GTG---CTGCTGCTGTTATAAGCAAATCGACAGTGTTTTCTGGAACTCCTGTAATGACATCAAACGCTCGGACCTTTTGACC-----------------------------------CATCCATGCTGAGGATG-TGCC-AGTGTGGCTCACAGGTCTAAGCTGCA-TGTTTCACAGGTGG-AACTAGGAGGCAGTTCTAAAGATTCCCCTGGGAGTTGGCTGAGCTAAAGCCCAAGTGTCGGCTTAGGGGAGGAGAGGTGGAGGTGGGTGGTGGG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16926753 420 - 220367699 CACTGCAGTCCCCTGT-GCCATGCAAGAGTTTAGTCTCCATTCCGGGAGCCTTGTGTTTCACT----AATACCCAGGGTCTCTTCtgctgagaaagaaagagaatagata-CTGGGAGAGAGCACTGGCAGTGCTTGTCACAGTGTGTGAAGCATGTGaaatagtgcctggcacgtaACCGGCGCATGTCA--GTG---CTGCTGCTGTTATAAGCAAATCGACAGTGTTTTTTGGAACTCCTGTAATGACATCAAACGCTCGGACCTTTTGACC-----------------------------------CATCCATGCTGAAGATG-TGCC-AGTGCGGCTCACAGGTCTAAGCTGCA-TGTTTCACAGGTGGAAACTAGGAGGCAGTTCTAAAGATTCCCCCGGGAGTTGGCTGAGCTAAAGCCCAAGTGTCAGCTTAGGGGAGGAAAGGTAGAGGTGGGTGGTGGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82729154 418 + 85787240 CACTGCAGCCCCCTGT-GCCATGCAAGAGTTTAGTCTCCATTCCGGGAGCCTTGTGTTTCACT----AATACCCAGGGTCTCTTCTGCTGAGAAAGAAAGAGGATAGATA-CCGGGAGAGA--ACCAGCAGTGCTTGTCACAGTGTGTGAAGCATGTGAAATAGTGCCTGGCATGTAACCGGTGCATGTCA--GTG---CTGCTGCTGTTATAAGCAAATCGACAGTGTTTTCTGGAACTCCTGTAATGACATCAAATGCTCGGTCCTTTTGACC-----------------------------------CATCCATGCTGAGGATG-TGCC-GGTGTGGCTCACAGGTCTAAGCTGCA-TGTTTTACAGGTGGAAACTAGGAGGCAGTTCTAAAGATTCCCCCGGGAGTTGGCTGAGCTAAAGCCCAAGTGTCGGTTTAGGGGAGGAGAGGTGGAGGTGGGTGGTGCG i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36512266 409 + 80974532 agcttaagccaccttt-actggggggga---tggtccctattctgggggctctatgccctgct----cctgctca--gtccccttcactgagaaag-aagagaatgggtatcagggACAGCCCACTGGC------CATCATGacacgtaaagcatgctaaatagggtctggcacgtaatcagtgcttaTCATGGTG---GTGGTGTGGCTATAAGCAAATAAACAATGTTTTCTAGAACTATTACTATAATACCAAGCACTAGGACCCCTTTTCCTAACACAGATACCTCTTTAACTTCATTGTAACATGTATTCATGCTGAGGGTG-TGGCTAGTATGGCTCACATTTCTAGACCATG-TGTTT----------------GGGGCG---------------CGTGCCGGTGCATGTGTGTGCGCACATGTGTGTGTTT-------CACGGGTGGAGGTTGGCGGTGGC i canFam3.chr7 I 282 I 158 e mm10.chr1 178925510 2644 + 195471971 I e calJac3.chr19 14447602 0 - 49578535 C a score=130944.000000 s hg38.chr1_KI270759v1_alt 395676 52 + 425601 aagtgggagtgTTTAGCCCTACCTCAGATCCTGGGGTGCTTGTCATGACCTC s panTro4.chr1 225153826 52 + 228333871 AAGTGGGAGTGTTTAGCCCTACCTCAGATCCTGGGGTGCTTGTCATGACCTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226524275 52 - 229942017 AAGTGGGAGTGTTTAGCCCTACCTCAGATCCTGGGGTGCTTGTCATGACCTC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140415511 52 - 143122389 AAGTGGGAGTGTTTAGCCCTACGTCAGGTCCTGGGGTGCTTGTCATGACCTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17117775 52 - 229590362 AAGTGGCAGTGTTTAGTCCTGCCTCAGATCCTGGGGTGCTTGTCATGACCTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223881721 52 - 227556264 AAGTGGCAGTGTTTAGTCCTGCCTCAGATCCTGGGGTGCTTGTCATGACCTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16927173 52 - 220367699 AAGTGGGAGTGTTTAGCCCTGCCTCAGATCCTGGGGTGCTTGTCATGACCTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82729572 52 + 85787240 AAGTGGGAGTGTTTAGCCCTGCCTCAGATCCTGGGGTGCTTGTCATGACCTC i chlSab2.chr25 C 0 C 0 e mm10.chr1 178925510 2644 + 195471971 I e canFam3.chr7 36512675 158 + 80974532 I e calJac3.chr19 14447602 0 - 49578535 C a score=873097.000000 s hg38.chr1_KI270759v1_alt 395728 346 + 425601 CTCTGTTACATCCACAAAATATTTAAAAGATTGAAATTCAGGCTTCAGCTGAATTTCAgggtgtagtggctcacacttgtaatcccagcacttcgggagattaaggtgg-gaggatcacttgaggccaggagtttgagaccagcctgggcaatatagcaagatgtcgtctct--caaaaaaaaacattt----aatta---------------------gctgggtgtggtggtgtgcacctgttatcccaactacttaggaggctgagacaagagaattgcttgagcccaggaattcaaggctgcagtgagctatggatcgcaccactgcactccagcctgggcaacagagcaagaccctgtctc-aaaaaaac s panTro4.chr1 225153878 345 + 228333871 CTCTGTTACATCCACAAAATATTTAAAAGATTGAAATTCAGGCTTCAACTGAATTTCAgggtatagtggctcacacttgtaatctcagcacttcgggagattaaggtgg-gaggatcacttgaggccaggagtttgagaccagcctgggcaatatagcaagatgtcgtctct--caaaaaaaaa-attt----aatta---------------------gctgggtgtggtggtgtgcacctgttgtcccaactacttaggaggctgagacaagagaattgcttgagcccaggaattcaaggctgcagtgagctatggatcgcaccactgcactccagcctgggcaacagagcaagaccctgtctc-aaaaaaac i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226524327 336 - 229942017 ATCCGTTGCATCCACAAAATATTTAAAAGATTGAAATTCAggct--------------gggtgtagtggctcacacctgtaatcccagcacttcgggagattaaggtgg-gaggatcacttgaggccaggagtttgagaccagcctgggcaatatagcaagatgtcatctct--caaaaaaaaattttttttaaatta---------------------gctggatgtggtggtgtgtacctgtcatcccaactacttaggaggctgagacaggagaattgcttgagcccaggaattcgaggctgcagtgagctat-gatcacaccactgcactccagcctgggcaacagagcaagaccctgtctcaaaaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140415563 325 - 143122389 ATCCGTTGCATCCACAAAATATTTAAAAGATTGAAATGCAggct--------------gggtgtagtggctcacacctgtaattccagcactttgggagattaaggtgg-gaggatcacttgaggccaggagtttgagaccagcctgggcaatatagcaagatatcatctct--caaaaaaaaa-attt----aatta---------------------gctgggtgtggtggtgtgcacctgtggtcccaactacttaggaggctgagac---agaattgcttgagcccaggaattcaaggctgcagtgagctat-gatcacaccactgcactccagcctgggcaac-gagcaagacccagtctc-aaaaaaa- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17117827 330 - 229590362 ATCTGTTACATCCACAAAATATTTAAAAGATTG-AATTCAggct--------------gggtgtagtggctcacaccggtaatcccagcactttgggagactaaggtggagaggatcacttgaggccaggagttcgagaccagcctgggcattatggcaagatgtcatctctacc-aaaaaaaa-aaaa----aaaaa---------------------gctgggtgtgggggtgt-cacctgtggtcccaactacttaggaggctgagacaggacaattgcttgagtccagcaattcaaggctgcagtgagctat-gatcgcaccactgcactccagcctgggcaacagagcaagaccctatctc-caaaaaaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223881773 331 - 227556264 ATCTGTTACATCCACAAAATATTTAAAAGATTG-AATTCAggct--------------gggtgtagtggctcacaccggtaatcccagcactttgggagactaaggtggagaggatcacttgaggccaggagttcgagaccagcctgggcaatatggcaagatgtcacctctaccaaaaaaaaa-aaaa----aaaaa---------------------gctgggtgtggtggtgt-cacctgtggtcccaactacttaggaggctgagacaggacaattgcttgagtccaggaattcaaggctgcagtgagctat-gatcgcaccactgcactccagcctgggcaacagagcaagaccctatctc-caaaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16927225 338 - 220367699 ATTTGTTACatccacaaaatatttaaaagattg-aattcaggct--------------gggtgtagtggctcacaccggtaatcccagcactttgggagactaaggtggggaggatcacttgaggccaggagttcgagaccagcctgggcattatgGCAAGATGTcagctctaccaaaaaaaaa-aaaa----aaaaaaaaaaa--------------cgctgggtgtggtggtgt-cacttgtggtcccaactacttaggaggctgagacaggacaattgcttgagtccaggaattcaaggctgcagtgagctat-gatcgcaccactgcactccagcctgggcaacagagcaagaccctatctc-caaaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82729624 329 + 85787240 ATCGGTTACATCCACAAAATATTTAAAAGATTG-AATTCTggct--------------gggtgtagtggctcacaccggtaatcccagcactttgggagactaaggtgg-gaggatcacttgaggccaggagttcgagaccagcctgggcaatatggcaagacgtcatctctaca-aaaaaaaa-aaaa----aaata---------------------gctgggtgtggttgtgt-cacttatggtcccagctacttaggaggctgagacaggacaattgcttgagtccaggaattcaaggctgcagtgagctat-gatcgcaccactgcactccagcctgcgcaacagagcaagaccctatctc-caaaaaaa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14447602 350 - 49578535 ctcTGTCTCAAAAACAAAA---ACAAAAAATTGAAATTCAggct--------------aggtgtagcggctcacacctgtaatcccagcactttgggagattaaggtgg-gaggatcacttgaagccaggaatttgagaccagcctgggcaatatagtgataccttgtctctacaaaaaaaaaa-aaaa----aaaaaaaaaaaaatttgttttaaatagctgggtatgacactatgcacctgtggtcacaactacttaggagggtgagacaggagaattgcttgagcccagaaattcaaggctgcagtgagctgt-gttcacaccactgcactccagcctggaccacagagcaagaccctgtctc-aaaaaaaa i calJac3.chr19 C 0 C 0 e mm10.chr1 178925510 2644 + 195471971 I e canFam3.chr7 36512675 158 + 80974532 I a score=140580.000000 s hg38.chr1_KI270759v1_alt 396074 52 + 425601 aac----aaaaaaaTTGAAATTCAGAAAGACTAA---CTCTCTGGGCTTATCCCCCTCC s panTro4.chr1 225154223 52 + 228333871 aaa----aaaaaaaTTGAAATTCAGAAAGACTAA---CTCTCTGGGCTTATCCCCCTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226524663 52 - 229942017 aaa----aaaaaaaTTGAAATTCAGAAAGACTAA---CTCTTTGGGCTTATCCCCCTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140415888 51 - 143122389 aaa----aaaaaaGTTGAATTTCAG-AAGACTAA---CTCTTTGGGCTTATCCCCCTCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17118157 50 - 229590362 aag------aaaaaTTGAAATTCAGAAAGACTAA---CTCTTTGGGCTTAATCCCCTCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223882104 50 - 227556264 aag------aaaaaTTGAAATTCAGAAAGACTAA---CTCTTTGGGCTTAATCCCCTCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16927563 54 - 220367699 aagaa--aaaaaaattgaaattcagaAAGACTAA---CTCTTTGGGCTTAATCCCCTCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82729953 54 + 85787240 aagaa--aaaaaaaTTGAAATTCAGAAAGACTAA---CTCTTTGGGCTTAATCCCCTCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14447952 50 - 49578535 aaa-------aaaaT--ACATTCAGAAAGATTAACTCCTCTTTGGGCTTAATCTCCTCC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36512833 50 + 80974532 ----ATTTAAAAGATTGAGATTCAAAAGGATTAA-----CTTTGGGCTTCATTCCCTCC i canFam3.chr7 I 158 C 0 e mm10.chr1 178925510 2644 + 195471971 I a score=1017954.000000 s hg38.chr1_KI270759v1_alt 396126 229 + 425601 TCAGGTTCTCAGAGACGGAGGCTTATCCCAGCACTATCCCTGGACACCTCTTCCCCTGTGAGAAAACCCCCCAACAGCACAGGCGTCCGCTGGGTGGATGGCCCCTTGCGGAGCAGCCCGAGGGGCCTTGGGGAACCCTTTGAGATTAAAGTCTATGAAATCGATGACGTGGAGCGCCTGCAGCGGCGACGAGGGGGTGCCAGCAAGGTGAGGCAGCCTCCTTCCCACC s panTro4.chr1 225154275 229 + 228333871 TCAGGTTCTCAGAGACGGAGGCTTATCCCAGCACTATCCCTGGACACCTCTTCCCCTGTGAGAAAACCCACCAACAGCACAGGCGTCCGCTGGGTGGATGGCCCCTTGCGGAGCAGCCCGAGGGGCCTTGGGGAACCCTTTGAGATTAAAGTCTATGAAATCGATGACGTGGAGCGCCTGCAGCGGCGACGAGGGGGCACCAGCAAGGTGAGGCAGCCTCCTTCCCACC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226524715 229 - 229942017 TCAGGTTCTCAGAGACGGAGGCTTATCCCAGCACTATCCCTGGACACCTCTTCCCCTGTGAGAAAACCCACCAACAGCACAGGCGTCCGCTGGGTGGATGGCCCCTTGAGGAACAGCCAGAGGGGCCTTGGGGAACCCTTCGAGATTAAAGTCTATGAAATCGATGACGTGGAGCGCCTGCAGCGGCGACGAGGGGGCGCCAGCAAGGTGAGGCAGCCTCCTCCCCAGC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140415939 229 - 143122389 TCAGGTTCTCAGAGACGGAGGCTTATCCCAGCACTATCTCTGGACACCTCTTCCCCCGTGAGAAAACCCACCAACAGCACAGGCGTCCGCTGGGTGGACGGCCCCTTGCGGAACAGTCAGAGGGGTCTTGGGGAACCTTTTGAGATTAAAGTCTATGAAATTGATGACGTGGAGCGCCTGCAGCGGCGACGAGGGGGCGCCAGCAAGGTGAGGCAGCCTCCTCCCCACC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17118207 227 - 229590362 TCAGGTTCTCAGAGACGGAGGCTTATCCCAGCACTATCCCTGGACACCTCTTCCCCTGTGAGAAAACCCACCAACAGCACAGGCGTCCGCTGGGTGGACGGCCCCCTGCGGAGCAGCCAGAGGGGCCTTGGGGAGCCCTTTGAGATTAAAGTCTATGAAATCGATGACGTGGAGCGCCTGCAGCGGCGACGAGGGGGCGCCAGCAAGGTGAGGCAGCCTCC--CCCACC i rheMac3.chr1 C 0 I 14 s macFas5.chr1 223882154 227 - 227556264 TCAGGTTCTCAGAGACGGAGGCTTATCCCAGCACTATCCCTGGACACCTCTTCCCCTGTGAGAAAACCCACCAACAGCACAGGCGTCCGCTGGGTGGACGGCCCCCTGCGGAGCAGCCAGAGGGGCCTTGGGGAGCCCTTTGAGATTAAAGTCTATGAAATCGATGACGTGGAGCGCCTGCAGCGGCGACGAGGGGGCGCCAGCAAGGTGAGGCAGCCTCC--CCCACC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16927617 221 - 220367699 TCAGGTTCTCAGAGACGGAGGCTTATCCCAGCACTATCCCTGGACACCTCTTCCCCTGTGAGAAAACCCACCAACAGCACAGGCGTCCGCTGGGTGGACGGCCCCCTGCGGAGCAGCCAGAGGGGCCTTGGGGAACCCTTTGAGATTAAAGTCTATGAAATCGATGACGTGGAGCGCCTGCAGCGGCGACGAGGGGGCGCCAGCAAGGTGAGGCAGCCTCC-------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82730007 227 + 85787240 TCAGGTTCTCAGAGACGGAGGCTTATCCCAGCACTCTCCCTGGACACCTCTTCTCCTGTGAGAAAACCCACCAACAGCACAGGCGTCCGCTGGGTGGACGGCCCCCTGCGGAGCAGCCAGAGGGGCCTTGGGGAACCCTTTGAGATCAAAGTCTATGAAATTGATGACGTGGAGCGCCTGCAGCGGCGACGAGGGGGCGCCAGCAAGGTAAGGCAGCCTCC--CCCACC i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14448002 228 - 49578535 TCAGGTTCTCAGAGACGGAGGCTCATCCCAGCACTGTCCCTGGACACCTCCTCCCCGGTGAGAAAACCCACCAACAGCACAAGCCTCCGCTGGGTGGATGGCCCCTTGCGCAGCAGCCAGAGGGGCCTCGGGGAGCCCTTTGAGATTAAAGTCTATGAAATCGATGACGTGGAGCGCCTGCAGCGGCGGCGAGGGGGCACTAGCAAGGTGAGGCAGCCTCCTCCTTCC- i calJac3.chr19 C 0 C 0 s mm10.chr1 178928154 227 + 195471971 TTAGGTTCCCAGAGACGGAGGCTCATTCCAGCACTGTCTCTCGATACCCCCTCACCTGTGAGGAAAACTGCCAGCAGCACAGGGGTCCGCTGGGTGGACGGCCCCTTGAGGAGCACCCAGAGGAGCCTTGGGGAACCATTCGAAATTAAAGTCTATGAGATTGATGACGTGGAGCGCCTGCAGCGACGTCGAGGAGCTACAAGCAAGGTGAGGCCACTTCCTCCTCA-- i mm10.chr1 I 2644 C 0 s canFam3.chr7 36512883 227 + 80974532 TCAGGTTCTCAGAGACGGAGGCTCATCCCGGCACTGTCCCTTGACACCCCATCCCCCATAAGAAAACCTGCCAGCAGCACCGGGGTCCGCTGGGTGGATGGCCCCTTGCGCAGCACCCAGAGGGGCCTCGGGGAGCCTTTTGAGATTAAAGTCTATGAAATTGATGACGTAGAACGGCTGCAGCGGCGACGAGGGGGCAACAGCAAGGTAAGGGATCTGTCCCCCCA-- i canFam3.chr7 C 0 C 0 a score=1200.000000 s hg38.chr1_KI270759v1_alt 396355 3 + 425601 CCC s panTro4.chr1 225154504 3 + 228333871 CCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226524944 3 - 229942017 CCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140416168 3 - 143122389 CCC i nomLeu3.chr5 C 0 C 0 s chlSab2.chr25 82730235 2 + 85787240 CC- i chlSab2.chr25 I 1 I 11 s calJac3.chr19 14448230 2 - 49578535 -CC i calJac3.chr19 C 0 I 1 e mm10.chr1 178928381 0 + 195471971 C e canFam3.chr7 36513110 0 + 80974532 C e rheMac3.chr1 17118434 14 - 229590362 I e papAnu2.chr1 16927838 0 - 220367699 C e macFas5.chr1 223882381 0 - 227556264 C a score=12184.000000 s hg38.chr1_KI270759v1_alt 396358 41 + 425601 TGCCTACGTGGTGGCA------GCTCCCCACC--------AAGCCTGAGCAGGTG s panTro4.chr1 225154507 41 + 228333871 TGCCCACGTGGTGGCA------GCTCCCCACC--------AAGCCTGAGCAGGCG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226524947 41 - 229942017 CGCCCGCATGGTGGCA------GCTCCCCACC--------AAGCCTGAGCAGGCG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140416171 41 - 143122389 CGCCCACGTGCTGGCA------GCTCCCCACC--------AAGCCCGAGCAGGCG i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223882381 13 - 227556264 ------------------------------------------ACCCACACGGGGG i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16927838 19 - 220367699 --------------------------CCCACC----------ACCCTTACAGGGG i papAnu2.chr1 C 0 I 1 s calJac3.chr19 14448233 40 - 49578535 CCCCGATGTGGTGGCA------GCT-CTCAGC--------AAGCCTGAGCAGGTG i calJac3.chr19 I 1 C 0 s mm10.chr1 178928381 22 + 195471971 -------AGGGTCATA------GATCCCC--------------------CAGGTT i mm10.chr1 C 0 C 0 s canFam3.chr7 36513110 47 + 80974532 --------TGATGGCAGCCACTGCTCCCCGCCCACCACCCAGCCCCAAGCAGGTG i canFam3.chr7 C 0 C 0 e rheMac3.chr1 17118434 14 - 229590362 I e chlSab2.chr25 82730237 11 + 85787240 I a score=2438649.000000 s hg38.chr1_KI270759v1_alt 396399 843 + 425601 -CTAGGCAGGGCCCTGGGGA-AGAAAACTCAGACCC----GGGCTTCCCAGCGGGCTTCTGGCATGGGTGGTGGGAAG--------GGGGCTTCTGTCCCAG-CAAAGGGCCTTTGGACAGAGGCCTTGGAGAGAGCCCCATGT-TTCTCTTCCTGAAATGTTTTAAGGGCTTCAAAGCCAGGGGT-----------------CGGGGGCTGGTGATCTTGGGGGCTTTTCTGGCTCC---T-----TGAGGCTCCCAGTCTTAAC-CAACCTTTGTCCAACTTG-AACACCCACCACCTGCTTTCTCAACTTAAGAATGGCCTGTCATAGTCCAAAAATGGTCTGTCATAGTCCAAGAATGGTCTGTCATAGTCCTACCTT---GTGAGGTGTCTGAATTGA--GGTCTGTCAAGGGAG-AATTTGGTGGGGATGACCCATGTCCCTCCCACACGTCTCCAAGC------CCAGCCTGTTTTCCATCAACGATACTCACAGGTGCT-CCTGTGGTGTGGGCTGGGTG----TGAGCAGAAG---GGC-----CCTTTC--------------TCCT-----------------CTCTG---------------TCTGTGTGCTAGGAGGCCATGTGCTTCAATGCAAAGCTGAAGATTCTGGAACACCGCCAGCAGAGGATCGCCGAGGTCCGCGCGAAGTACGAGTGGCTGATGAAGGAGCTGGAGGCGACCAAACAGTATCTGATGCTGGATCCCAACAAGTGGCTCAGTGAATGTAAGG-CCGG--GGTGCCTTCCCACCCTTGTGACTAGTGGGTTCACCTGCTCAACCGGGCTGGCGTGTAGCCCAGGGTGACAGTGACACAGGCTGTGTCCTCGTCCTCAGTCACAGGATGCCCATCAAATGGAGGAAGTTGCACCGAGCGAGCAGCCCTACTCCCCTGGGGATGGGCGGGAG s panTro4.chr1 225154548 844 + 228333871 -CCAGGCAGGGCCCTGGGGA-AGACAACTCAGACCC----GGGCTTCCCAGCGGGCTTCTGGCATGGGTGGTGGGAAG--------GGGGCTTCTGTCCTAG-CAAAGGGCCTTTGGACAGAGGCCTTGGAGAGAGCCCCATGT-TTCTCTTCCTGAAATGTTTTAAAGGCTTCAAAGCCAGGGGT----------------GGGGGGGCTGGTGATCTTGGGGGCTTTTCTGGCTCC---T-----TGAGGCTCCCCGTCTTAAC-CAGCCTTTGTCCAACTTG-AACACCCACCACCTGCTTTCTCAACTTAAGAATGGCCTGTCATAGTCCAAAAATGGTCTGTCATAGTCCAAGAATGTTCTGTCATAGTCCTACCTT---GTGAGGTGTCTGAATTGA--GGTCTGTCAAGGGAG-AATTTGGCGGAGATGACCCATGTCCCTCCCACACGTCTCCAAGC------CCAGCCTGCTTTCCATCAACGATACTCACAGGTGCT-CCTGTGGTGTGGGCTGGGTG----TGAGCGGAAG---GGC-----CCTTTC--------------TCCT-----------------CTCTG---------------TCTGTGTGCTAGGAGGCCATGTGCTTCAATGCAAAGCTGAAGATTCTGGAACACCGCCAGCAGAGGATCGCCGAGGTCCGCGCGAAGTACGAGTGGCTGATGAAGGAGCTGGAGGCGACCAAACAGTATCTGATGCTGGATCCCAACAAGTGGCTCAGTGAATGTAAGG-CCGG--GGTGCCTTCCCACCCTTGTGACTAATGGGTTCACCTGCTCAACCGGGCTGGCGTGTAGCCCAGGGTGACAGTGACACAGGCTGTGTCCTCGTCCTCAGTCACAGGATGCCCATCAAATGGAGGAAGTTGCACCGAGCGAGCAGCCCTACTCCCCTGGGGATGGGCGGGAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226524988 793 - 229942017 -CCAGGCAGGGCCCTGGGGA-AGACAACTCAGACCC----GGGCTTCCCAGCGGGCTTCTGGCATGGGTGATGGGAAG--------GGGGCTTCTGTCCCAG-CAAAGGGCTTTTGGACAGAGGCCTTGGAGAGAGCCCCATGT-TTCTCTTCCTGAAATGTTTTAAAGGCTTCAAAGCCAGGGGT-----------------GGGGGGCTGGTGATCTTGGGGGCTTTTCTGGCTCC---T-----TGAGGCTCCCTGTCTTAAC-CAGCCTTTGTCCATCTTG-AACACCCACCACCTGCTTTCTCAACTTAAGAATGGTCTGTCA--------------------------------------GTCATAGTCCTACCTT---GTGAGGTGTCTGAACTGA--GGTCTGTCAACGGAG-AATTTGGCAGAGATGA------------CCACACGTCTCCACGC------CCAGCCTGTTTTCCATCAACAATACTCTCAAGTGCT-CCTGTGGCGTGGACTGGGTG----TGAGCAGAAG---GGC-----CCTTTC--------------TCCT-----------------CTCTG---------------TCTGTGTGCTAGGAGGTCATGTGCTTCAACGCAAAGCTGAAAATTCTGGAACACCGCCAGCAGAGGATCGCCGAGGTCCGCGCCAAGTACGAGTGGCTGATGAAGGAGCTGGAGGCGACCAAACAGTATCTGATGCTGGATCCCAACAAGTGGCTCAGTGAATGTAAGG-CCGG--GGTTCCTTCCCACTCTTGTGACTAATGGGTTCACCTGCTCAACCGGGCTGGCGTGTAGCCCAGGGTGACAGTGACACAGGCTGCATGCTCGTCCTCAGTCACAGGATACCCATCAAATGGAGGAAGTTGCACCGAGCGGGCAGCCCTACTCCCCTGGGGATGGGCAGGAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140416212 808 - 143122389 -CCAGGCAGGGCCCTGGGGA-AGGCAACTCAGACCC----AGGCTTCCCAGCGGGCTTCTGGCATGGGTGGTGGGAAG--------GGGGTTTCTGTCCCAG-CAAAGGGCCTTTGGACAGAGGCCCTGGAGAGAGCCCCATGT-TTCTCTTCCTGAAATGTTTGAAAGGCTTCAAAGCCAGGGGT-----------------GGGGGGCTGGTGATCTTGGGGGCTTTTCTGGCTCC---T-----TGAGGCTCCCCGTCTTAAC-TAGCCTTTGTCCATCTTG-AACACCTACCACCTGCTTTCTCAACTT--------------------------------------GTCCAAGAATGGCCTGTCATAGTCCTACCTT---GTGAGGTGTCTGAACTGACTGGTCTGTCAAGGCAGAAATTTGGCGGAGATCACCTATGTCCCTCCCACACGTCTCCATGC------CCAGCCTGTTTTCCATCAACAATACTCACAAGTGCT-CCTGTGGCATGGGCTGGGTG----TGAGCAGAAG---GGC-----CCTTTC--------------TCCT-----------------CTCTG---------------TCTGTGTGCTAGGAGGTCATGTGCTTCAACGCAAAGCTGAAAATTCTGGAACACCGCCAGCAGAGGATCGCCGAGGTCCGCGCCAAGTACGAGTGGCTGATGAAGGAGCTGGAGGCGACCAAACAGTATCTGATGCTGGATCCCAACAAGTGGCTCAGTGAATGTAAGG-CCGG--GGTTCCTTCCCACCCTTGTGACTAATGGGTCCACCCGCTCAACCAGGCTGGCGCGTAGCCCAGGGCGACAGCGACACAGGCTGCGTCTGCGTCCTCAGTCACAGGATGCCCATCAAATGGAGGAAGTTGCACCGAGCGAGCAGCCCTACTCCCCTGGAGATGGGCGGGAG i nomLeu3.chr5 C 0 I 320 s rheMac3.chr1 17118448 823 - 229590362 -CCAGGCAGGGCCCTGGGGA-AGACGGCCCAGACCC----AGGCTTCCCAGCCGGCTTCTGGCTCGGGTGGTGGGAAG--------GGGGCTTCTGTCCCAG-CAAAGGGCCTTTGGACAGAGGCTGTGGAGAGAGCCCCGTGT-TTCTCTTGCTGAAATGTTGTAAAGGCTCCAAAGCCAGGGGT------------------GGGGGCTGATGATCTTGGGGGCTTTTCTGGCTCC---T-----TGAGGCTCCCCGTCTTAAC-CAGCCTTTGTCCATCTTGAAACACCCACCACCTGCTTTCTCAATTTAAGAATGGCCTGTCA---------------------TAGTCCAAGAATGGCCTGTCATAGTCCTACCTT---GTGAGGTGTCTGAACTGACTGGCCTGTCGAGGCAGAAATGTGGCCCAGATCACCTGGGTCCCTCCCACACGTCTCCATCC------CCAGCCTGTTTTCCATCAACGATACTCACAGGTGCTCCCTGTGGCGTGGGCTGGGCG----TGAGCAGAAG---GGC-----CCTTTC--------------TCCT-----------------CTCTG---------------TCTGTGTGCTAGGAGGTCATGTGCTTCAACGCCAAGCTGAAAATTCTGGAACACCGCCAGCAGAGGATCGCCGAGGTCCGCGCCAAGTACGAGTGGCTGATGAAGGAGCTGGAGGCGACCAAACAGTACCTGATGCTGGATCCCAACAAGTGGCTCAGTGAATGTAAGG-CCGG--GGTTCCTTCCCTCCCTCGCAACTACTGGGCTCCCCCGCTCACCAGGCCTGGTGCATAGCCCAGGGAGCCAGTGACAGAGGCTGCGTCCACCTCCTCGGTCCCAGGATGCCCACCACGTGGAGGAAGTTGCACCCAGCCAGCAG-CCTACT-CCCCGGGGGCAGGCGGGA- i rheMac3.chr1 I 14 C 0 s macFas5.chr1 223882395 819 - 227556264 -CCAGGCAGGGCCCTGGGGA-AGACGGCCCAGACCC----AGGCTTCCCAGCCGGCTTCTGGCTCGGGTGGTGGGAAG--------GGGGCTTCTGTCCCAG-CAAAGGGCCTTTGGACAGAGGCTGTGGAGAGAGCCCCGTGT-TTCTCTTGCTGAAATGTTGTAAAGGCTCCAAAGCCAGGGGT------------------GGGGGCTGATGATCTTGGGGGCTTTTCTGGCTCC---T-----TGAGGCTCCCCGTCTTAAC-CAGCCTTTGTCCATCTTGAAACACCCACCACCTGCTTTCTCAATTTAAGAATGGCCTGTCA---------------------TAGTCCAAGAATGGCCTGTCATAGTCCTACCTT---GTGAGGTGTCTGAACTGACTGGCCTGTCGAGGCAGAAATGTGGCCGAGATCACCTGGGTCCCTCCCACACGTCTCCATCC------CCAGCCTGTTTTCCATCAACGATACTCACAGGTGCTCCCTGTGGCGTGGGCTGGGCG----TGAGCAGAAG---GGC-----CCTTTC--------------TCCT-----------------C-------------------TCTGTGTGCTAGGAGGTCATGTGCTTCAACGCCAAGCTGAAAATTCTGGAACACCGCCAGCAGAGGATCGCCGAGGTCCGCGCCAAGTACGAGTGGCTGATGAAGGAGCTGGAGGCGACCAAACAGTACCTGATGCTGGATCCCAACAAGTGGCTCAGTGAATGTAAGG-CCGG--GGTTCCTTCCCTCCCTCGCAACTACTGGGCTCTCCCGCTCACCAGGCCTGGCGCATAGCCCAGGGAGCCAGTGACAGAGGCTGCGTCCACCTCCTCGGTCCCAGGATGCCCACCACGTGGAGGAAGTTGCACCCAGCCAGCAG-CCTACT-CCCCGGGGGCAGGCGGGA- i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16927858 801 - 220367699 -CCAGGCAGGGCCCTGGGGA-AGACGGCCCAGACCC----AGGCTTCCCAGCCGGCTTCTGGCTCGGGTGGCGGGAAG--------GGGGTTTCTGTCCCAG-CAAAGGGCCTTTGGACAGAGGCTGTGGAGAGAGCCCCGTGT-TTCTCTTGCTGAAATGTTGTAAAGGCTCCAACGCCAGGGGT------------------GGGGGCTGATGATCTTGGGGGCTTTTCTGGCTCC---T-----TGAGGCTCCCCGTCTTAAC-CAGTCTTTGTCCATCTTGAAACACCCACCACCTGCTTTCTCAATTT------------------------------------------AAGAATGGCCTGTCATAGTCCCACCTT---GTGAGGTGTCTGAACTGACTGGCCTGTCGAGGCAGAAATGTGGCCGAGAtcacctgggtccctcccacacgTCTCCATCC------CCAGCCTGTTTTCTGTCAACGATACTCACAGGTGCTCCCTGTGGCGTGGGCTGGGCG----TGAGCA-AAG---GGc-----cctttc--------------tcct-----------------ctctg---------------tctGTGTGCTAGGAGGTCATGTGCTTCAACGCCAAGCTGAAAATTCTGGAACACCGCCAGCAGAGGATCGCCGAGGTCCGCGCCAAGTACGAGTGGCTGATGAAGGAGCTGGAGGCGACCAAACAGTACCTGATGCTGGATCCCAACAAGTGGCTCAGTGAATGTAAGG-CCGG--GGTTCCTTCCCTCCCTCGCAACTACTGGGCTCCCTCGCTCACCAGGCCTGGCGCGTAGCCCAGGGAGCCAGCGACAGAGGCTGCGTCCACCTCCTCGGTGTCAGGATGCCCACCACGTGGAGGAAGTTGCACCCAGCGAGCAG-CGTACT-CCCCCGGGGTGGGCGGGA- i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82730248 824 + 85787240 -CCAGGCAGGGCCCTGAGGA-AGACGGCCCAGACCC----AGGCTTCCCAGCCGGCTTCTGGCTCGGGTGGTGGGAAG--------GGGGCTTCTGTCCCAG-CAAAGGGCCTTTGGACAGAGGCTGTGGAGAGAGCCCCGTGT-TTCTCTTGCTGAAATGTTATAAAGGCTCCAAAGCCAGGGGT------------------GGGGGCTGATGATCTTGGGGGCTTTTCTGGCTCC---T-----TGAGGCTCCCCGTCTTAAC-CAGCCTTTGTCCATCTTGAAACACCCACCACCTGCTTTCTCAATTTAAGAATGGCCTGTCA---------------------TAGTCCAAGAATGGTCTGTCATAGTCCTACCTT---GTGAGGTGTCTGAACTGACTGGCCTGTCGAGGCAGAAATGTGGCCGAGATCACCTGGGTCTCTCCCACACGTCTCCATCC------CCAGCCTGTTTTCCATCAACAATACTCACAGGTGCTCCCTGTGGCGTGGGCTGGGCG----TGAGCAGAAG---GGC-----CCTTTC--------------TCCT-----------------CTCTG---------------TCTGTGTGCTAGGAGGTCATGTGCTTCAATGCCAAGCTGAAAATTCTGGAACACCGTCAGCAGAGGATCGCCGAGGTCCGTGCCAAGTACGAGTGGCTGATGAAGGAGCTGGAGGCGACCAAACAGTACCTGATGCTGGATCCCAACAAGTGGCTCAGTGAATGTAAGG-CCGG--GGTTCCTTCCCTCCCTCGCGACTACTGGGCTACCCCACTCACCAGGCCTGGCGCGTAGCCCAGGGAGCCAGCAACAGAGGCTGTGTCCACCTCCTCGGTCCCAGGATGCCCACCACATGGAGGGAGCTGCACCCAGCGAGCAG-CGTACTGCCCCGGGGGCGGGTGGGA- i chlSab2.chr25 I 11 C 0 s calJac3.chr19 14448273 763 - 49578535 -CCAGCTGCGGCCCTGGGGA-AGTCGGCTCAGACCC----AGCCTTCCCAGC-----------------------------------GGGCTTCTGTCCCAG-CAAAGGGCCTTGGGACAGAGGCTTTGGAGAGAGACCCGTGT-TTCTCCTCCTGAAATGTTTTAA---CTCCAAAGCCAAGGGGTGCATGGCTGGTGATCTGCAGGTCTTGTGATCTGCAGGGCTTTTCTGGCTCC---T-----TGAGGTTTCCCGTCTTAAC-CAGCCTTCGTCCATCTTGAAACACCTACCATCTGCTTTCCCAGTTC------------------------------------------AAGAATGGTCTGTAATAGTCCTGCCTT---GTGAGTTGTCTGAAGTGACTGGTCTGTCGAGGCAGAAATTCGGCTGGGATCACCTTGG--CCTCTCGTACGTCT------------CCAGCCTG-TTTCCATCTACGACACTCATAAGCGCTCCTTGTGGCGAGGGCTGGGTG----TGAGCAGAAG---GGC-----CTCTTC--------------TCCTGTCCACCCCACCTCCTCCTCTG---------------TCTGTGTGCTAGGAGGTCATGTGCTTCAACGCAAAGCTGAAGATCCTGGAGCACCGCCGGCAGAGGATCGCCGAGGTCCGCGCCAAGTACGAGTGGCTGATGCAGGAGCTGGAGGCAACCAAGCAGTATCTGATGCTGGATCCCAACAAGTGGCTCAGCGAATGTAAGG-CCTG--GGTTCCGTCCCATCGTCGTGACTCATGGGCC--------------------CGTGTGGCCCAGGGTGACAGTGACACAGGCCGAGTCTACGTCCTCGGTCACA-GATGCA--------GGAGCGACCTG---------ATCAGCCCTGCTCCCCTGGGGGTGGGCGGGAG i calJac3.chr19 C 0 C 0 s mm10.chr1 178928403 753 + 195471971 -CC-------GCCCTAAGGATAGAACTTCCAGA-------GGGCCTTC--ACAGGTTTCTGGGATGGCCAGTGGATGGCGGGCGGCAGGGCTCTGGTCCCAG-CCACAGACTTTGGTAGA----------------TCCTGTGTGTTCATTTCCTGGAACACCTTAAAAGCTAGTGAGCCTGAGTT-------------------------------CTGAGGGACTTTTCTGGCTCC---TTGTTCTGAGGTTCCACACATGAGTGCAGACT---GATATTTTG-GGGAGCCA-----TGGTTCTTCTAGAT------------------------------------------TAGTACAGCCTACAGTAGTCT--CCCTGGAGTTGGGCGTCTTGTCTGTTGAGGTCATCAGGATCCTATCATGCCTCTGGAAACCTGGGCTCCTGTCACCCGCCCC----------------------TCCCACAGTCCTTCTCTCTGGAGGTGGCTGCA----GGGATGAGTC----AGAGTGGAAG---GCCCTCTGCTTTTC--------------TTCT-----------------CTCTACTGCCCACCTCTTCCTCTGTGAAC-AGGAGGTCATGTGCTTCAATGCCAAGCTGAAAATCCTAGAACATCGGCAGCAGAGAATCGCTGAAGTCCGAGCCAAGTACGAGTGGCTGATGAAGGAGCTAGAAGCGACCAAGCAGTACCTGATGCTGGACCCCAACAAGTGGCTTCGTGAATGTAAGA-CCCATTGGCACATGCCCATCTTTGCTATCACAGTGGTCTCCAGTAACACAATCTAGGAGCCTAACCCAGGATGACAGCCACAGAGACTGCTTGCA-----TCCGAGGCATGGGGCTGGTGGGATAGAG-ATGTCCTAAAGAGT-AGCAATCCTTCTATCTATC------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36513157 781 + 80974532 CTGGAGCAGTGACCCGA-GA-GGCCGCCTCAGACCCTTGGAGACTTCCCAGCGGGCTTCTGGCATGGGAGGGAGGTGG--------TGG--CTCTGCCCCAGATAAAGGGTATTTGCACAGGACTTC---AGAGAGCTCTGCGT-GTCTCCGCCCCGGGTGTCTAGGAGGCT-------CAGAGGC-----------------TGGGCACTGCTGGTCCTCAGGGCTTGTCTGGCTCCAGTT-----TGGGAC-----------AC-CAGCC----------------------------ACCTCCTCAATTCAAGA--------------------------------------AATAATG-CCTGTGATGATCCTGCCCT---GC-AGCTGTCTGAGCTGACT---CTGGCAGGGCAGAAACGTGGCAGGGAGGGCCCAGGTCCCCCCCA---GCTCCCCAGCAGGGGGCCAGCCCCCTTGTTGCTGAC--TGCACAGAGCATTCCCATTTAGGAGAGGCTGCGTGGATCCGAGCTGGGGCTCTGC-----CCCTCCTCATGCACCCCCATTCCT-----------------TCCCT---------------TCTGCCTTCCAGGAGGTCACGTGCTTCAATGCAAAACTGAAAATTCTGGAGCATCGCCAGCAGAGAATCGCCGAGGTCCGAGCCAAGTACGAGTGGCTGATGAAGGAGCTGGAGATCACCAAACAGTATCTGATGCTGGATCCCAACAAGTGGCTCAGCGAATGTAAGGCCCCA--GGTTTCTTTCTATCGTGGGGACTGCCGGGTTCGCCAGCTAAACAGGCCTGGCACACAGCCCGGGGTGAGGTGTGCGCAGATGGTGTCCGGATCTGAGGGCCCTGGATGCC-ATCAGA--GAGACAGTAGCA-CGAGCCCACAGCCTCACTCTCCGCAGGGAAGATGGGAG i canFam3.chr7 C 0 C 0 a score=3182756.000000 s hg38.chr1_KI270759v1_alt 397242 1025 + 425601 GGGCCGGGACAGCAGAGGGGTGGTGAATATTGCTCTTGCAAGATTATTTCT---ACGTGTCTCAGTCCAAAGCACCTGAAAATGAG----ATTTT-----------TCCCCCTGCGTGTGGCAGAAGATCACCCAGACATGAAGGCTGTATTACAAAT---CTCCTAGGCCACAAAATCACACTGCATATCTAGCCTGAAATAGACAAGAATTTATAGAGCCCTTAAAAAGGTAGAGTGTACAGTCCTCGAAAAGCCACGCAGAGAACCCAGAAAGCAAGGAAAACATTTTTGAGT----------GGAAAAA-AAAAAAAAAAGA-CAGCCACAGTGTTATTTCCATTTAATAGAAAGCCCAGGATGACCATAACCATCTAATAACAATTCAGGACAATTTTGCTCTCTTTGAAAGGTGGATTCAATTG--TCTTGTCTTATTAGTTCCTGACCATTCCATTTAGCACAAAATAAAACTTCAGTCTGGTCCCAGCTATT-ACACGG--ATATAGGAGCTAATGCTGGAAGACTCA---GTCTGTG---GGGTGAAATACATTC-CTGCCATTCAAGTTCCCTCTGCCTCCCCTTCC--CATCCAGCCCTCAGCCT-CCGGCA-GGCC---TCCT-TTGTACAGCCCCT-------CCCCTGCACTGCCCCAACCCTCTTCCAGTC-TTCCCCAGCCAGTGTGGA-----GGGCCTACAGGTGGAGGCTGGAAGCTTAGGTTTATGTTCCAAAGCAGCTGGTTGAAAAGATATTGGTGTGAAATGGTCCTGGGTGAAGGTGCGGAAGAAAGTGGCAGGACTTGTCAGCCTCCCAGCTGTGCCTTCCACATGTAAC---TGCA----GTCTCGCAGCAGCTGCCTCTCCACAGGGATAAGGTGATAACAACATTTCCCTAAGTACTCATTGGATTCTTGGGA-----------------------------------------CAGTCTGTGGAGCATTCTATAATATAATATTAAGTTGCAGCATTTGCCGCTGTGGCCACaggcatacagacctgctttggctgctggctttctc-acatactagctgtgggacctcaggt----aagacactta---a---ctctgagccttgacttccttagctgta s panTro4.chr1 225155392 1017 + 228333871 GGGCCGGGACAGCAGAGGGGTGGTGAATATTGCTCTTGCAAGATTATTTCT---ACGTGTCTCAGTCCAAAGCACCTGAAAATGAG----ATCCT-----------TCCCCCTGCATGTGGCAGAAGATCACCCAGACATGAAGGCTGTATTACAAAT---CTCCTAGGCCACAAAATCACACTGCATATCTAGCCTGAAATAGACAAGAATTTATAGAGCCCTTAATAGGGTAGAGTGTACAGTCCTCGAAAAGCCACGCAGAGAACCCAGAAAGCAAGGAAAACATTTTTGAGTGG-----GGGGGAAAAA-AAAAAAGACAGA-CAGCCACAGTGTTATTTCCATTTAATAGAAAGCCCAGGATGACCATAACCATCTAATAACAATTCAGGACAATTTTGCTCTCTTTGAAAGGTGGATTCAA-------TTGTCTTATTAGTTCCTGACCATTCCATTTAGCACAAAATAAAACTTCAGTCTGGTCCCAGCTATT-ACACGG--ATATAGGAGCTAATGCTGGAAGACTCA---GTCTGTG---ACGTGAAATACATTC-CTGCCATTCAAGTTCCCTCTGCCTCCCCTTCC--CATCCAGCCCTCAGCCT-CCGGCA-GGCC---TCCT-TTGTACAGCCCCT-------CCCCTGCACTGCCCCAACCCTCTTCCAGTC-TTCCCCGGCCAGTGCGGA-----GGGCCTGCAGGTGGAGGCTGGAAGCTTAGGTTTATGTTCCAAAGCAGCTGGTTGAAAAAATATTGGTGTGAAATGGTCCTGGGTGAAGGTGCGGAAGAAAGTGGCAGGACTTGTCAGCCTCCCAGCTGTGCCTTCCACATGTAAC---TGCA----GTCTCGCAGCAGCTGCCTCTCCACAGGGATAAGGTGAT---AACATTTCCCTAAGTTCTCATTGGATTCTTGGGA-----------------------------------------CAGTCTGTGGAGCATTC-----TATAATATTAAGTTGCAGCACTTGCCACTGTGGCCACaggcatacagacctgctttggctgctggctttctc-acatactagctgtgggacctcaggt----aagacacttc---a---ctctgagccttgacttccttagctgta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226525781 1020 - 229942017 GGGCCGGGACAGCAGAGGAGTGGTGAATATTGCTCTTGCAAGATTATTTCT---ACGTGTCTCAGTCCAAAGCACCTGAAAATGAG----ATTTT-----------TCCCCCTGCGTGTGGCAGAAGATCACCCAGACATGAAGGCTGTATTACAAAT---CTCCTAGGTCACAAAATCACACTGCATATCTAGCCTGAAATAGACAAGAATTTATAGAGCCCTTAATAGGGTAGAGTGTACAGTCCTCGAAAAGCCACGCAGAGAACCCAGAAAGCAAGGAAAACATTTTTGAGT---------GGAAAAAA-AAAAAAAAAAGA-CAGCCACAGTGTTATTTCCATTTAATAGAAAGCCCAGGATGACCGTAACCATCTAATAACAATTCAGGACAATTTTGCTCTCTTTGAAAGGTGGATTCAATTG--TCTTAT-TTATTTGTTCCTGACCATTCCATTTAGCACAAAATAAAACTTCAGTCTGGTCCCAGCTATT-ACACTGATATATAGGAGCTAATGCTGGAAGACTCA---GTCTGTG---GGGTAAAATACATTC-TTGCCATTCAAGTTCCCTCTGCCTCCTCTTCC--CATCCAGCCCTCAGCCT-CCGGCAGGGCC---TCCT-TTGTACAGCCCCT-------CCCCTGCACTGCCCCAACCCTCTTCCAGTC-TTCCCTGGCCGGTGCGGA-----GGGCCTGCAGGTGGAGGCTGGAAGCTTAGGTTTATGTTCCAGAGCAGCTGGTTGAAAAAATATTGGGGTGAAATGGTCCTGGGTGAAGGTGCGGAAGAAAGTGGCAGGACTTCTCAGCCTCCCAGCTGTGCCTGCCACATGTAAC---CGCA----GTCTCGCAGCAGCTGCCTCTCCATAGGGATAAGGTGAT---AACATTTCCCTAAGTACTCATTGGATTCTTGGGA-----------------------------------------CAGCCTGTGGAGCATTC-----TATAATATTAAGTTGCAGCATTTGCCGCTGTGGCCACaggcatgcagacctgctttggctgctggctttctc-acatactagctgtgggacctcaggt----aagacactta---a---ctctgagccttgacttccttagctgta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140417340 1036 - 143122389 GGGCCGGGACAGCAGAGGGGTGGTGAATATTGCTCTTGAAAGATTATTTCT---ACGTGTCTCAGTCCAAAGCACCTGAAAATGAG----ACTTT-----------TCCCCCTGCATGTGGC---AGATCACTCAGACATGAAGGCTGTATGACAAATCTGCTCCTAAGCCACAAAATCACACTGCATATCTAGCCTGAAATAGACAGGAATTTATAGAGCCCTTAATAGGGTAGAGTGTACAGTCCTCGAAAAGCCACGCAGAGAACCCAGAAAGCAAGGAAAACATTTTTGAGTGGaaaaaaagaaaaaaa-aaaaaaaGACGA-CAGCCACAGTGTTACTTCCATTTAATAGAAAGCCCAGGATGACCGTAACCATCTAATAACAATTCAGGACAGTTTTGCTCTCTTTGAAAGGTGGATTCAATTGTCTCTTAT-TTATTTGTTCCTGACCATTCCATTTAGCACAAAATAAAACTTCAATCTGGTCCCAGCTATT-ACACTG--CTATAGGAGCTAATGCTGGAAGACCCAGTCGTCTGTG---GGGTAAAATACATTC-CTGCCATTCGAGTTCCCTCTGCCTCCCCTTCC--CATCCGGCCCTCAGCCT-CTGGCA-GGCC---TCCT-TTGTACCGCCCCT-------CTCCTGCACTGCCCCAACCCTCTTCCAGTC-TTCCCTGGCCAGTgcggggggctgggcctgcaggtggaggctggaagctTAGGTTTATGTTCCAAAGCAGCTGGTTGAAAAAATATTGGGGTGAAATGGTCCTGGGTGAAGGCACGGAAGAAAGTGGCAGGACTTGTCAGCCTCCCAGCTGTGCCTGCCACATGGAAC---TGCA----GTCTCGCAGCAGCTGCCTCTCCACAGGGATAAGGTGAT---AACATTTCCCTAAGTACTCACTGGATTCTTGGGA-----------------------------------------CAGTCTGTGGGGCATCC-----TATAATATGAAGTTGCAGCATTTGCAGCTGTGGCCACaggcatacagacctgctttgacttctggctttctc-acatactagctgtgggacctcaggt----aagacactta---a---ctctgcgccttgacttccttagctgta i nomLeu3.chr5 I 320 C 0 s rheMac3.chr1 17119271 1023 - 229590362 GGGCCGGGGCAGC-AAGAGGTGGTGAATATTGCTCTTGCAAGATTATTTCCC--ACGTGTCTCAGTCCAAAGCACCTGAAAATGAG----ATTTT-----------TCCCCCTGCTTGTGGCGGAAGATCACCCAGACATGAAGACTG--TTACAGATCTGCTCCTCGGCC-CCAAATCACACTGCATATCTAGCCTGAAATAGACAAGAATTTATAGAGCCCTTAATAGGCTAGAGTGCACCGTCCTAGAAAAGCTGCGCAGAGGACCCAGAAAGCAAGGAAAACATTTTTGAGTG----aaaaaaaaaaaa-aaaaaaaaaCGA-CAGCCACAGGATTATTTCCATTTAAT----AGCCCAGGATGACCGTAACCATCTAATAACAATTCAGGACAATTTTGCTCTCTTTGAAAGATGGATTCAGTTGTCTCTTAC-TTATTTGTTCCTGACCATTCCATTTAGCACAAAATAAAACTTCAATCTGGTCCCAGCTATT-ACACTG--ATACAGGAGCTAATGCTGGATGACTCA---GTCTGTG---GGGTCAAATACATTC-CTGCCATTCAGGTTCCCTCTGCCTCCCCTTCC--CATCCTGCCCTCAGCCT-CTGGCA-GGCC---TCCT-TTGTACTGCCCCT-------CCCCCGCACGGCCCCCACCCTCTTCCGGTC-TTCCCTGGCCAGTGCGGA-----GGGCCTGCAGGCAGAGGCTGGAAGCTTAGGTTTATGTTCCAAAGCAGCTGGTTGAAAAGATATTGGGGTGAAACGGTCCTGGGTCAAGGTGCGGAAGAAAGTGGCAGGACTTGTCGGCCTCCCGGCCATGCC-GCCACGTGTAAC---CGCA----GTCTCCCAGCAGCTGCCTCTCCCTAGGAAAAAGGTGCT---AACATTTCCCTAAGGACTCACTGGATTCTTGGGA-----------------------------------------CAGTCTATGGAGCATCC-----TGTAATAGTAAGTTGCAGCCTTTGCAGCTGTGGCCACaggcatacagacctgctttggctgctggctctctc-acagactagctgtaggacctcgggtaagaaagacacttc---a---ctctgagccttgacttccttagctgta i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223883214 1025 - 227556264 GGGCCGGGGCAGC-AAGAGGTGGTGAATATTGCTCTTGCAAGATTATTTCTC--ACGTGTCTCAGTCCAAAGCACCTGAAAATGAG----ATTTT-----------TCCCCCTGCTTGTGGCGGAAGATCACCCAGACATGAAGACTG--TTACAGATCTGCTCCTCGGCC-CCAAATCACACTGCATATCTAGCCTGAAATAGACAAGAATTTATAGAGCCCTTAATAGGCTAGAGTGCACCATCCTAGAAAAGCTGCGCAGAGGACCCAGAAAGCAAGGAAAACATTTTTGAGTGa--aaaaaaaaaaaaa-aaaaaaaaaCGA-CAGCCACAGGATTATTTCCATTTAAT----AGCCCAGGATGACCGTAACCATCTAATAACAATTCAGGACAATTTTGCTCTCTTTGAAAGATGGATTCAATTGTCTCTTAC-TTATTTGTTCCTGACCATTCCATTTAGCACAAAATAAAACTTCAATCTGGTCCCAGCTATT-ACACTG--ATATAGGAGCTAATGCTGGACGACTCA---GTCTGTG---GGGTCAAATACATTC-CTGCCATTCAGGTTCCCTCTGCCTCCCCTTCC--CATCCTGCCCTCAGCCT-CTGGCA-GGCC---TCCT-TTGTACTGCCCCT-------CCCCCGCACGGCCCCCACCCTCTTCCGGTC-TTCCCTGGCCAGTGCGGA-----GGGCCTGCAGGCAGAGGCTGGAAGCTTAGGTTTATGTTCCAAAGCAGCTGGTTGAAAAGATATTGGGGTGAAACGGTCCTGGGTCAAGGTGCGGAAGAAAGTGGCAGGACTTGTCGGCCTCCCAGCCGTGCC-GCCACGTGTAAC---CGCA----GTCTCCCGGCAGCTGCCTCTCCCTAGGAAAAAGGTGCT---AACATTTCCCTAAGGACTCACTGGATTCTTGGGA-----------------------------------------CAGTCTATGGAGCATCC-----TGTAATAGTAAGTTGCAGCCTTTGCAGCTGTGGCCACaggcatacagacctgctttggctgctggctctctc-acagactagctgtaggacctcgggtaagaaagacacttc---a---ctctgagccttgacttccttagctgta i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16928659 1020 - 220367699 GGGCCGGGGCAGC-GAGGGGTGGTGAATATTGCTCTTGCAAGATTATTTCTT--ACGTGTCTCGGTCCAAAACACCTGAAAATGAG----ATTTT-----------CCCCCCTGCTTGTGGCGGAAGATCACCCAGACATGAAGACTG--TTACAGATCTGCTCCTCGGTC-CCAAATCACACTGCATATCTAGCCTGAAATAGACAAGAATTTATAGAGCCCTTAATAGGCTAGAGTGTACCATCCTAGAAAAGCTGCGCAGAGAACCCAGAAAGCAACGAAAACatttttgagtga--aaaaaaaaaaaaacaaaaaaaaacga-cAGCCACAggattatttccatttaat----aGCCCAGGATGACCGTAACCATCTAATAACAATTCAGGACAATTTTGCTCTCTTTGAAAGATGGATTCAATtgtctcttat-ttatttgttcctgACCATTCCATTTAGcacaaaataaaacttcaatCTGGTCCCAGCTATT-ACACTG--ATATAGGAGCTAATGCTGGAAGACTCA---GTCTGTG---GGGTCAAATACATTC-CTGCCATTCAGGTTCCCTCTGCCTCCCCTTCC--Catcctgccctcagcct-ctggCA-GGCC---TCCT-TTGTACTGTCCCT-------CCCCTGCTCAGCCCCCACCCTCTTCCGGTC-TTCCCTGGCCAGTGCGGA-----GGGCctgcaggcagaggctggaagctTAGGTTTATGTTCCAAAGCAGCTGGTTGAAAAGATATTGGGGTGAAACGGTCCTGGGTCAAGCTACGGAAGAAAGTGGCAGGACTTGTCGGCCTCCCGGCC--GCC-GCCACGTGTAAC---CGCA----GTCTCCCGGCAGCTGCCTCTCCCTAGGAATAAGGTGCT---AACATTTCCCTAAGGACTCACTGGATTCTTGGGA-----------------------------------------CAGTCTATGGAGCATCC-----TGTAATAGTAAGTTGCAGCCTTTGCAGCTGTGGCCACAGGCATACAGACCTGCTTTGGCTGCTGGCTCTCTC-ACAGACTAGCTGTGGGGCCTCGGGT----AAGACACTTC---A---CTCTGAGCCTTGACTTCcttagctgta i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82731072 1014 + 85787240 CGGCCGGGGCAGC-GAGGGGTGGTGAATATTGCTCTTGCAAGATTATTTCTC--ACGTGTCTCAGTCCAAAGCACCTGAAAATGAG----ATTTT-----------CCCCCTTGCTTGTGGCGGAAGATCACCCAGACATGAAGACTG--TTACAGATCTGCTCCTTGGTC-CCAAATCACACTGCATATCTAGCCTGAAATAGACAAGAATTTATAGAGCCCTTAATAGGCTAGAGTGTACGGTCCTAGAAAAGCTGCACAGAGAACCCGGAAAGCAAGGAAAACACTTTTGAGTG---aaaaaaaaaaaaa-aaaaaaaCACGA-CAGCCACAGGACTATTTCCATTTAAT----AGCCCAGGATGACCGTAACCATCTAATAACAATTCAGGACAATTTTGGTCTCTTTGAAAGATGGATTCAATTGTCTC-----TTATTTGTTCCTGACCATTCCATTTAGCACAAAATAAAACTTCAATCTGGTCCCAGCTATT-ACACTG--ATATAGGAGCTAATGCTGGAAGACTCA---GTCTGTG---GCGTCAAATACATTC-CTGCCATTCAGGTTCCCTCTGCCTCCCCTT-----ATCCTGCCCTCAGCCT-CTGGCA-GGCC---TCCT-TTGTACTGCCGCT-------CCCCTGCACGGCCCCCACCCTCTTCCAGTC-TTCCCTGGCCAGTGCGGA-----GGGCCCGCAGGCAGAGGCTGGAAGCTTAGGTTTATGTTCCAAAGCAGCTGGTTGAAAAAATATTGGGGTGAAACGGTCCTGGGCCAAGGTGCGGAAGAAAGTGGCAGGACTTGTCAGCCTCCCAGCCGTGCCTGCCACGTGTAAC---TGCA----GTCTCCCGGCAGCTGCCTCTCCCTAGGAATAAGGTGCT---AACATTTCCCCAAGGACTCACTGGATTCTTGGGA-----------------------------------------CAGTCTATGGAGCATCC-----TATAATAGTAAGTTGCAGCCTTTGCAGCTGTGGCCACAGGCATACACACCTGCtttggctgctggctttctc-acagactagctgtgggacctcgggt----aagacacttc---a---ctctgagccttgacttccttagctgta i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14449036 977 - 49578535 GGGCTGGGACAGC-GAGGGGTGGTGAATATCACTCTTGCAAGATTATTT-----AAGGGTCTCAGTCCAAGGCACATGAAAATGAG----ATTTC-----------TCCCCCTGCACGGGGC---AGATCACCCAGACATGAAGGCTGTGTGACACATCTGCTCCTCAGGCACAAAATCACCCTGCATATCTAGCCTGAAATAGACAAGAATATATAGAACCCTTCAGAGGATAGTGTGTACAATCCTAGAAAAGCCACATGGAGAACCCAGAAAGCAAGGAAAATGTTTGTGAGTGA--------AAAAATC-ATAATAACACCA-CAGCCACAGTGCTGTTTCCATTGAATGGGAAGCCCAAGATGACCATAACCATCTCGTAACAATTCAGGACAATTTTGCTGTCTTTGAAAGATGGATTCAATTGTCTC-----TCATTTGTTTCTGACCATTCCATTTAGCACAAAGTAAAACTTCAGCCTGGTCCCAGCTATT-ACACTG--ATGCAAGAGGCAGCGCTGGAAGACTCA---GGCTGTA--------AAATACATTC-CTGCCGCTCAGGTTCCCTCGGCCTCC-CTTCC--CATGCAGCCCTCCG-CT-CCGGCG-GGCC---TCCT-TTGTAATGCACCC-----------------ACCCCCTCCCCCTTCCAGTC-TT-CTTGGCCAGTGCGGG-----GGGTCTGCAGGTGGAGGCCGAAAGCTGAGGTTTATCTTCCAAAGCAGCTGGTTGAAAGCATATTGGGGTGAAATGGTCCTGGGT--------GGAAGAAAGTGTCAAGAACTGTAGGCCTCCCG---------GCCATATGGAAG---CTCA----GACTCCCAGCAGCTGCTTCTCTGCAGGAAGGAGGTAGT---AGCATTGCCCGCAGTACTCACTGGATTCCTGGGG-----------------------------------------AAGTCTGTGGAGTATCC-----TGTAGTCTTCAGTTGCAGCACTTGCAGCTATGAGCACagccatacagacctgctttggctggtggctttttc-acacactggctg-ggggccttgggt----aggacactta---a---ctctgagccttgatttccttagctgtg i calJac3.chr19 C 0 C 0 s mm10.chr1 178929156 883 + 195471971 AGGCCAGGGCAACAGAGGGCTAGTAAGAATTCCT-GTATAAGATACTTTCACTTGAGGGTCTTAGTTGAGAGCACCTGAAAGCAAAACGTATTAT-----------CTTCCCTACACCTGGCAGAAGA----------------------------------TTCTAAGCCATAGACTCATGAGGTTTATCTAGCCTAAAATGGACCAGGAC-TATAGCTCTCTTCATAGACTAATATGTGCCACCCACAAACTGTTCCT--GGTGACCCTG------------------------------------------AAAATCCAATGACCAGCTCTTGGGTTAATTCCATTAAGCCAAGAGCCCAGG-TGATAGTAACCACCAGGTAACTATTTGTAATGGTGCTGTTCTTTTTGAGAGATAGATTTGATTGTCCCTAAT-TTATTTGTTACCAGCTATTCCATTTACTTCAAAATAAGGCTT-AACTTTGCTCCGGCTATTAACACTG--ATATGGGA-CCAATCCTGGAAGGCTTT---GTCTGTCTGTAGGTAAAATACAACAGCAGCTTTACAAAGGCTCTCTCCACAACTTTCC--TGCCCAGCTCT-----T-CCCTCC-AACC---TCCTCTTGTTAACACCTT-------CTCCTGCGAGTC----ACACCCTCCTGGTG-CTCCCT-GCTGGTGAGGA------ATCTCACAGATGGAGCCTAGAGGCTTGGATGTGTGTTCCAAAGAGCTGGGTTTAGAACAGACTG----GAAACGAT----GATACAGGT---GAAGAAAGG----------------CTCCTGACTA-GCTTACCAAGAGTAATAAACCCA----CCTTCACAGC----GTCTCTTTCTTGG---AAGCTGAG---AAAA------------------------------------------------------------------------------TAGAGAGCCC-----TACTATTTGGGGCTGCA---TCTATGTCCCTGCTCAAGGTCCCAcagacatgatttcaatactggcttttgctacgtgctggctgtgtaactttgggt----aaggtgttttctga---ctttgggtcttggtttcctt-gctata i mm10.chr1 C 0 C 0 s canFam3.chr7 36513938 1014 + 80974532 -CGGTGGGGCAGCATGGGGATAGCGAGTGTTGCTCTTGAAAGAATTTTCCTC--ATGTGTCTCAGTCCCAAGCATCTGAAAATGAG----ATTCCACACTGCCCCACCCCCCAAAATACAGCAGAAGATTCCCCAGACATGAAG-CTGCATTACAAATCTTCTCCTAGGCCACAAGATCGCATTGCATTTCTAGCCTGAAATACACAAGAATTTATAGAGCTTCTAATAGGGTGGAATGTGCAATCCTAGAAAAGCCTCACAAAGAACCCAGAAAGCAGGAAAAACATTTTTGAT-------------------GGAAAAGAATAG-CATTCACTGTGTTATTTCTGTTCAATAGAAAGCCTAGGATGACAGTAACCATCTCGTAACAATTCAGAACAATTTTGCTTTCTCTGACA----GATTCAATTGTCTCCTAT-TTATTTGCTCCTAACCATTCCATTTACCACAAAATAAA----------GGTCCCGACTATT-TCATTG--ATAGGGGACGCAAGGCTGGAAGACTCA---GTCTATA---GAATAAAATGCATGA-CTGCCATTAAAATTC-CTCTCCCTCCCTGTCCTGCACTCGCTCCCCAGCCTCCCAGCA-CCCCCCACCCC-CCGCCTCACCCCTTCACCCGTCCCTGCATGCCAATCACCTTCTCCCCCTTGTTCCCTGGCTGGAGGGAG-----AGTGTGGTAGGCAGGGTCTGCAGGCTCGGATTTG---------------------AGAAATACCAGG--------------------TGCACGCAGGA------CAGGACTCGCCAGCCTCCCAGCTGTGCT--CTACCCCTAAA---GGCAGCATGCTTCCAAGTagtttcttttccgtaagaatggggtagt---gacatggcccaagcaccccactggatccttgtgaggaGGATCCAGCGCACCAACCTGAGGACAGAGCACGGTGATCAGTCTGTGAAGCATCC-----TACCGT-----GCTGTACCATGTgtgg-gatgagcacagtcatgcagacctga-cgggaggctggcttgccc-acataccagctgtgggatcttgagg----aagacgctta---acctctctgagccttggtttcctgagttgaa i canFam3.chr7 C 0 I 2 a score=431589.000000 s hg38.chr1_KI270759v1_alt 398267 149 + 425601 aaatgggaaaaataatggtgactacaccatagggcagttgtgaggtataaatcagttcccgttggtcctcttggtgctt----actacactgcttggcccaggatgagagctcaggatctggtagtaattattACTATTATCCCAAAGTTCAA s panTro4.chr1 225156409 149 + 228333871 aaatggggaaaataatggtgactacaccatagggcagttgtgaggtatcaatcagttcccgttggtcctcttggtgctt----actacactgcttggcccaggatgagagctcaggatctggtagtaattattACTATTATCCCAAAGTTCAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226526801 153 - 229942017 aaatgggaaaaataatggtgactacaccatagggcagttgtgaggtgtaaatcagttcccgttggtcctcttggtgcttattaattacactgcttggcccaggatgagagctcaGAATCCGGCAGCAATTATTACTATTATCCCAAAGTTCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140418376 149 - 143122389 aaatgggaaaaacaatggtgactacaccacggggcagttgtgaggtataaatcagttcccgttggtcctcttggtgctt----attacactgcttggcccaggatgagagctcaggatctggtagtaattattACTATTATCCCGAAGTTCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17120294 146 - 229590362 aaatgggaaaaataatggtgactacaccacagggcagttgtgaggtgtggatcagtacctgttggtcctcttggtgctt----attacactgcttggcccaggatgagagctcaGGATCTGCTAGTA---ATTAGTATTATCCCAAAGTTCAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223884239 149 - 227556264 aaatgggaaaaataatggtgactacaccacagggcagttgtgaggtgtgaatcagtacctgttggtcctcttggtgctt----attacactgcttgacccaggatgagagctcaggatctgctagtaattattAGTATTATCCCAAAGTTCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16929679 149 - 220367699 aaatgggaaaaataatggtGACTACACCACAGGGCAGTTGTGAGGTGTAAATCAGTACCTGTTGGTCCTCTTGGTGCTT----ATTACACTGCTTGGCCCAGGATGAGAGCTCAGGATCTGGTAGTAATTATTAGTATTATCCCAAAGTTCAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82732086 149 + 85787240 aaatgggaaaaataatggtgactacaccacagggcagttgtgaggtgtgaatcagtacctgttggtcctcttggtgctt----attacactgcttggcccaggatgagagctcaggatctgctagtaattattAGTATTACCCCAAGTTTCAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14450013 140 - 49578535 aaatggtaacggtgatggcaacgacaccacagggtggtcgtgaggtgtaagccagctcctgttggttctc-------------actatgctgcttggcccaggatgacagttcaggacctggtagTAATTATCATCTTCATCCCCAAGTTCAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178930039 122 + 195471971 aaa-gagaagagtggtcatgcccatcccatagggtggttctaggctg-----cagcaaatg----------------------TTTATGCTGCATGGTCCAGAGGAGGAGTTTGGCATCTTGGAATA---TATGCAGTTATCCCAGAGTTCAG i mm10.chr1 C 0 C 0 e canFam3.chr7 36514952 2 + 80974532 I a score=332150.000000 s hg38.chr1_KI270759v1_alt 398416 108 + 425601 ---------------CAACAGGAGACATTTCCTggccaggcacggtggctcacgcctgtaatcccagcaccttgggaggccaaggtgggcagatcacttgagcccaggagttcaagaccagcc s panTro4.chr1 225156558 108 + 228333871 ---------------CAACAGGAGACATTTCCTggccgggcatggtggctcatgcctgtaatcccagcaccttgggaggccaaggtgggcagatcacttgagcccaggagttcaagaccagcc i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226526954 108 - 229942017 ---------------CAACAGGAGACATTTCCTggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatcacttgagcccaggagttcaagaccagcc i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140418525 108 - 143122389 ---------------CAACAGGAGACATTGCCTggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacttgagcccaggagttcaagaccagcc i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17120440 108 - 229590362 ---------------CAACAGGAGACATTTCCTggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatgacttgagcccaggagttcaagaccagcc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223884388 108 - 227556264 ---------------CAACAGGAGACATTTCCTggccaggtgcggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatgacttgagcccaggagttcaagaccagcc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16929828 108 - 220367699 ---------------CAACAGGAGACatttcctggccaggtgtggtggctcacgcctgtaatcccagcacttcgggaggccaaggtgggcagatgacttgagcccaggagttcaagaccagcc i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82732235 108 + 85787240 ---------------CAACAGGAGACATTTCCTggccaggtgtggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagatgacttgagcccaggagttcaagaccagcc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14450153 122 - 49578535 CAACATCCACATTCTCAACAGGAGACACTTCCTggctggatgtggcggctctcacctgtaatcccagcactttgggaggccaaagtgggtggatcacttgagcccaggagttcaagatga-ct i calJac3.chr19 C 0 C 0 e mm10.chr1 178930161 0 + 195471971 C e canFam3.chr7 36514952 2 + 80974532 I a score=41764.000000 s hg38.chr1_KI270759v1_alt 398524 16 + 425601 ttgacaacatggtgtg s panTro4.chr1 225156666 16 + 228333871 ttgacaacatgctgtg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226527062 16 - 229942017 ttgacaacatggtgtg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140418633 16 - 143122389 ttgacaacatggtgtg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17120548 16 - 229590362 ttgacaacgtggtgtg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223884496 16 - 227556264 ttgacaacgtggtgtg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16929936 16 - 220367699 ttgacaacgtggtgtg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82732343 16 + 85787240 ttgacaacgtggtatg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14450275 14 - 49578535 gtggccacatg--gcg i calJac3.chr19 C 0 C 0 s mm10.chr1 178930161 16 + 195471971 TCAACTAGATAGTCTG i mm10.chr1 C 0 C 0 e canFam3.chr7 36514952 2 + 80974532 I a score=362608.000000 s hg38.chr1_KI270759v1_alt 398540 138 + 425601 aaaccctgtctgtctctaccaaaaatacaaaaattagccgggc-------------------gtggtggcgggcacctgtaatctcagctactc----------------------------------aggaggctgaggTTGCAGTGAGCCAGAGATTGCGCCA----------------------------GACCCTGTCTCAAAAATAAAAAT-AAA---- s panTro4.chr1 225156682 134 + 228333871 aaacc----ccgtctctaccaaaaatacaaaaattagccaggc-------------------gtggtggcgggcacctgtaatctcagctactc----------------------------------aggaggctgaggTTGCAGTGAGCCGGAGATTGCGCCA----------------------------GACCCTGTCTCAAAAATAAAAAT-AAA---- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226527078 166 - 229942017 aaacc----ccgtctctaccaaaaatacaaaaattagccaggc-------------------gtggtggcgggcacctgtaatctcagctactc----------------------------------aggaggctgaggttgcagtgagccggagattgcaccactgcactccagcctgggtgacggagcctgaccctgtctcaaaaataaaaat-aaaaaac i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140418649 162 - 143122389 aaacc----ccatctctaccaaaaatacaaaaattagccgggc-------------------gtggtggcaggcacctgtaatcccagctactc----------------------------------aggaggctgaggttgcagtgagccagagattgcgccactgcactccagcctgggtgacggagccagaccctgtctcaaaaataaaaat-aaa---- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17120564 162 - 229590362 aaacc----ccgtctctaccaaaaatacaaaaattagctgggt-------------------gtggtggcaggcacctgtaatcccagctactc----------------------------------aggaggctgaggttgcagtgagct-gagattgcatcactgcactccagcctgggtgacggagtgagaccctgtctcaaaaatacaaataaaa---- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223884512 161 - 227556264 aaacc----ccgtctctaccaaaaatacaaaaattagctgggt-------------------gtggtggcaggcacctgtaatcccagctactc----------------------------------aggaggctgaggttgcagtgagct-gagattgcatcactgcactccagcctgggtgacggagtgagaccctgtctcaaaaatacaaat-aaa---- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16929952 145 - 220367699 aaacc----ccatctctaccaaaaatataaaaattagctgggt-------------------gtggtggtaggcacctgtaatcccagctactc----------------------------------aggag----------------gct-gagattgcatcactgcactccagcctgggtgacggagtgagaccctatctcaaaaatacaaat-aaa---- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82732359 161 + 85787240 aaacc----ccatctctaccaaaaatataaaaattagctgggc-------------------atggtggcaggcacctgtaatcccagctactc----------------------------------aggaggctgaggttgcagtgagct-gagatcgcgtcactgcactccagcctgggtgacggagtgagaccctatctcaaaaatacaaat-aaa---- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14450289 201 - 49578535 aaacc----ccatctctaccaaaagtataaaaattagccaggcatagtgtgtgtgtggtggggtgggggcgggtgcctgtaatcccagctactctgaggacgctgaggcaggagaatcacttggaccagggaggcagaggttgcagtgagct-gagatcgcacctctgcgttccagcctgggggacagagt--gagcccatctta------------caa---- i calJac3.chr19 C 0 C 0 e mm10.chr1 178930177 0 + 195471971 C e canFam3.chr7 36514952 2 + 80974532 I a score=8190.000000 s hg38.chr1_KI270759v1_alt 398678 2 + 425601 AA s panTro4.chr1 225156816 2 + 228333871 AA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226527244 2 - 229942017 aa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140418811 2 - 143122389 aa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17120726 2 - 229590362 aa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223884673 2 - 227556264 aa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16930097 2 - 220367699 aa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82732520 2 + 85787240 aa i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14450490 2 - 49578535 aa i calJac3.chr19 C 0 C 0 s canFam3.chr7 36514954 2 + 80974532 aa i canFam3.chr7 I 2 C 0 e mm10.chr1 178930177 0 + 195471971 C a score=2189347.000000 s hg38.chr1_KI270759v1_alt 398680 697 + 425601 ACAGGAGGCATTTCCTTCGTGTCTGCTTGCATGATGCACTGAGGAGTTGGATCTTCTGTTAGAAATTTGAGCAAAGAAAGACATGAACT--AGTCCTGCGA-GGGCCTTTCATCGAAGGCGCTAATGGGGAGGGCA-GACAGGGGCGAGGGCGCTGGTTACTGTCTGCGCGTGACATGCGCACGGGGCGCTGTGCTTATCC---CTCCCCGCTGCGGATACCCTTTTCCTTG--TTTCAGGAATCCCTGGCCACTTCAAGATCCCAGGGGCCTCCTTTCAGTCAGT---CAGTTCTCTCTCCttcatttttgctattttcatt-aacattttattttcaAGAACTGTTTATGCCCAAGGCAGACTTGACTTGAAAATTATCTTCATCTTACAAAGTCAGTCATA-TTTTTCCC---------AGGATGGGAACAAGCTGAAACATCAATACATATGTG-TTTAGATGCTTCCAGGAAACAATTGCTTCCTTCTAGTCTTTGTACATGT-CAAAAATCA-------CTGTGTTTTTGATGCTGAGAAAGAAAATGAACAGAAAGCTACATGAAAGGG-GAAATATATATTGTTTCTTGAAGATGAATTGAAAACAGTAATGA---------AAAAAAGGAT---CAATGA-GCTGCCTGCTGACTATTCC----CTGTGGGCATGA------GGCA-GGGGAC-------------TGGCATGGA--AAGA------------TCCATTTTTAGTTCTATTATTTCTTCATTCTGATGCCAC s panTro4.chr1 225156818 671 + 228333871 ACAGGAGGCACTTCCTTCGTGTCTGCTTGCATGATGCACTGAGGAGCTGGATCTTCTGTTAGAAATTTGAGC----AAAGACATGAACT--AGTCCTGCGA-GGGCCTTTCATCGAAGGCGCTAATGGGGAGGGCA-GAC--GGGCGAGGGCGTTGGTTACTGTCTGCGCGTGACATGCGCACGGGGCGCTGTGCTTATCC---CTCCCCGCTGCGGATACTGTTTTCCTTG--TTTCAGGAATCCCTGGCCACTTCAAGATCCCAGGGGCCTCCTTTCAGTCAGT-----------TCTCCTTCATTTTTGCTATTTTCATT-AACATTTTATTTTCAAGAACTGTTTATGCCCAAGGC-----CGACTTGAAAATTATCTTCATCTTACAA----AGTCATA-TTTTTCCC---------AGGATGGGAACAAGCTGAAACATCAATACATATGTG-TTTAGATGCTTCCAGGAAACAATTGCTTCCTTCTAGTCTTTGTACATGT-CAAAAATCA-------CTGTGTTTTTGATGCTGAGAAAGAAAATGAACAGAAAGCTACATGAAAGGG-GAAATACAGATTGTTTCTTGAAGATGAATTGAAAACAGTAATGA---------AAAAAAGGAT---CAATGA-GCTGCCTGCTGACTATTCC----CTGTGGGCATGA------GGCA-GGGGAC-------------TGGCATGGA--AAGA------------TCCATTTTTAGTTC---TATTTCTTCGTTCTGATGCCAC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226527246 668 - 229942017 aCAGGAGGCATTTCCTTCGTGCCTGCTTGCATGATGCACT---GAGTTGGATCTTCTGTTAGAAATTTGAGG----AAAGACATGAACT--CGTCCTGCGA-GGGCATTTCATTGAAGGCTCTAATGGGGAGGGCA-GACAGGGGCAAGGGCGTTGGTTACTGTCTGCCCATGACATACGCACGGGGCACTGTGCTTATCC---CTACCCGCTGCGGATACCCTTTTCCTTG--TTTCAGGAATCCCTGGCCACTTAAAGATCTCGGGGGCCTCCTTTCAGTCAGT-----------TCTCCTTCATTTTTGCTATTTTCATT-AACATTTTATTTTCAAGAACTGTTTATGCCCAAGGC-----AGACTTGAAAATTATCTTCATCTTACAA----AGTCATA-TTTTTCCC---------AGGATGGGAACAAGCTGAAGCATCAATACATATGTG-TTTAGATGCTTGCAGGAAACAATTGCTTCCTTCTAGTCTTTGTACATGT-CAAAAATCA-------C--TGTTTTTGATGCTGAGAAAGAAAATGAACAGAAAGCTACATGAAAGGG-GAAATACAGATTGCTTCTTGAAGATGAATTGAAAACAGTAATGA---------AAAAAAGGAT---CAATGA-GCTGCCTGCTGACTATTCC----CTGTGGGCAAGA------GGCA-GGGGAC-------------TGGCATGGA--AAGA------------TCCATTTTTAGTTG---TATTTCTTCCTTCTGATGCCAC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140418813 663 - 143122389 aCAGGAGACATTTCTTTCATGCCTGCTTGCATGATGCACT---GAGTTGGATCTTCTGTTAGAAATGGGAGC----AAAGACATGAACT--TGTCCTGCGA-GGGCGTTTCATCCAAGGCTCTAAGGGGCAG----------GGGCGAGGACGTTGGTTACTGTCTGCCCATGACATGCGCACGGGGTGCTGTGCGTATCC---CTCCCCGCTACGGATACCCTTTTCCTTG--TTTCAGGAATCCCTGGCCACTTAAAGATCCCAGAGGCCTCCTTTCAGTCAGT-----------CGTCCttcatttttgctattttcatt-aacattttattttcTAGAACTGTTTATGCCCAAGGC-----AGACTTGAAAATTATCTTCATCTTACAA----AGTCATATTTTTTCCC---------AGGATGGGAACAAGCTGAAACATCAATACATACGTG-TTTAGATGCTTCCAGGAAACAATTGCTTCCTTCTAGTCTTTGTACATGT-CAAAAATCA-------CTGTGTTTTTGATGCTGAGAAAGAAAATGAACAGAAAGCTACATGAAAGGG-GAAATACAGATTGTTTCTTGAAGATGAATTGAAAACAGTAATGA---------AAAAAAGGAT---CAATGA-GCTGCCTGCTGACTATTCC----CTGGGGGCAAGA------GGCAGGGGGAC-------------TGGCATGGA--AAGA------------TCCATTTTTAGTTC---TATTTCTTCGTTCTGATGCCGC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17120728 682 - 229590362 aCAGGAGGCATTTCCTTCATGCCTGCTTGCCTGATGCACT---GAGCTGGATCTTCTGTTAGAAATGTGAGC----AAAGACATGAACT--TGTCCTGTGA-GGGCATTTCATCGAGGGCACTAATGGGGAGGGCA-GACG-GGGCGAGGGCATTGGTTACTGTCTGCCCGTGACATGCGCACAGGGCCCTGTGCTTATC----CCCCCCGCTGCGCATACCCTTTTCCTTG--TTTCAGGAATCCCTGGCCACTTAAAGATCCCAGGGGCCTCCTTTCAGTCAGTTCTCTGTCAGTTCTCCTTCATTTTTGCTATTTTCATT-AACATTTTATTTTTAAGAACTGTTTATGCCCAGGGC-----AGACTTGAAAATTATCTTCATCTTACAA----AGTTGTGTTTTTTCCC---------AGGATGGGAACAAGCTGAAACATTAATACGTACGTG-TTTAGCTGCTTCCAGGAAACAACCGCTTCCTTCTAGTCTTTGTACATATGTCAAAATCA-------CTGTGTTTTTGATGCTGAGAAAGAAAATGAACAGAAAGCTACATGAAAGGG-GAAACACAGATTGTTTCTTGAAGATGAATTGAAAACAGTAATGG---------AAAAAAGGAT---CAATGAGGCTGCCTGCTGACTGTTCC----CTGTGGGCAAGA------GGCA-GGGGAC-------------TGGCATGGA--AAGA------------TCCATTTTTAGTTC---TATTTCTTCGTTCTGATGCCAC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223884675 682 - 227556264 aCAGGAGGCATTTCCTTCATGCCTGCTTGCCTGATGCACT---GAGCTGGATCTTCTGTTAGAAATGTGAGC----AAAGACATGAACT--TGTCCTGTGA-GGGCATTTCATCGAGGGCACTAATGGGGAGGGCA-GACG-GGGCGAGGGCGTTGGTTACTGTCTGCCCGTGACATGCGCACGGGGCCCTGTGCTTATC----CCCCCCGCTGCGCATACCCTTTTCCTTG--CTTCAGGAATCCCTGGCCACTCCAAGATCCCAGGGGCCTAATTTCAGTCAGTTCTCTGTCAGTTCTCCTTCATTTTTGCTATTTTCATT-AACATTTTATTTTTAAGAACTGTTTATGCCCAGGGC-----AGACTTGAAAATTATCTTCATCTTACAA----AGTTGTGTTTTTTCCC---------AGGATGGGAACAAGCTGAAACATTAATACGTACGTG-TTTAGCTGCTTCCAGGAAACAACCGCTTCCTTCTAGTCTTTGTACATATGTCAAAATCA-------CTGTGTTTTTGATGCTGAGAAAGAAAATGAACAGAAAGCGACATGAAAGGG-GAAACACAGATTGTTTCTTGAAGATGAATTGAAAACAGTAATGG---------AAAAAAGGAT---CAATGAGGCTGCCTGCTGACTGTTCC----CTGTGGGCAAGA------GGCA-GGGGAC-------------TGGCATGGA--AAGA------------TCCATTTTTAGTTC---TATTTCTTCGTTCTGATGCCAC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16930099 686 - 220367699 acaggagGCATTTCCTTCATGCCTGCTTGCATGATGCACT---GAGCTGGATCTTCTGTTAGAAATGTGAGC----AAAGACATGAACT--CGTCCTGTGA-GGGCATTTCATTGAAGGCACTAATGGGGAGGGCA-GACG-GGGTGAGGGCGTTGGTTACTGTCTGCCCGTGACATGCGCACGGGGCCCTGTGCTTATCCCCTCCCCCCACTGCGCATACCCTTTTCCTTG--CTTCAGGAAGCCCTGGCCACTTAAAGATCCCAGGGGCCTCCTTTCAGTCAGTTCTCTGTCAGTTCTCCTTCATTTTTGctattttcatt-aacattttatttttaagaactgtTTATGCCCAGGGC-----AGACTTGAAAATTATCTTCATCTTACAA----AGTTGTGTTTTTTCCC---------AGGATGGGAACAAGCTGAAACATTAATACGTACGTG-TTTAGCTGCTTCCAGGAAACAACCGCTTCCTTCTAGTCTTTGTACATATGTCAAAATCA-------CTGGGTTTTTGatgctgagaaagaaaatgaacagaaagcTACATGAAAGGG-GAAACACAGATTGTTTCTTGAAGATGAATTGAAAACAGTAATGG---------AAAAAAGGAT---CAATGAGGCTGCCTGCTGACTGTTCC----CTGTGGGCAAAA------GGCA-GGGGAC-------------TGGCATGGA--AAGA------------TCCATTTTTAGTTC---TATTTCTTTGTTCTGATGCCAC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82732522 678 + 85787240 aCAGGAGGCATTTCCTTCATGCCTGCTTGCATGATGCACT---GAGCTGGATCTTCTGTTAGAAATGTGAGC----AAAGACATGAACT--TGTCCTGTGA-GGGCATTTCATCGAGGGCACTAATGGGGAGGGCA-GACG-TGGCGAGGGCGTTGGTTGCTGTCT----GTGACATGCGCACGGGGCCCTGTGCTTAT-----CCCCCCGCTGCGGATACCCTTTTCCTTG--TTTCAGGAATCCCTGGCCACTCAAAGATCCCAGGGGCCTCCTTTCAGTCAGTTCTCTGTCGGTTCTCCTTCATTTTTGCTATTTTCATT-AACATTTTATTTTTAAGAACTGTTTATGCCCAGGGC-----AGACTTGAAAATTGTCTTCATCTTACAA----AGTTGTGTTTTTTCTC---------AGGATGGGAACAAGCTGAAACATTAATACGTACATG-TTTAGCTGCTTCCAGGAAACAACCGCTTTCTTCTAGTCTTTGTACATATGTCAAAATCA-------CTGTGTTTTTGATGCTGAGAAAGAAAATGAACAGAAAGCTACATGAAAGGG-GAAACACAGATTGTTTCTTGAAGATGAATTGAAAACAGTAATGG--------AAAAAAAGGAT---CAATGAGGCTGCCTGCTGACTATTCC----CTGTGGGCAAAA------GGCA-GGGGAC-------------TGGCATGGA--AAGA------------TCCATTTTTAGTTC---TATTTCTTCGTTCTGATGCCAC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14450492 663 - 49578535 gaaGGAGACATTTCCTTCGTGCCTGCTTTCATGATGCACT---GAGCTGGATCTTCTGGTAGAAATTTGAAC----AAAGACATGAACT--GGTCCTCTGA-GGGCATTTTGTCCAAGGCACTGATGGGGAGGGCA-GAT--GGGTGAGGATGCTGGTGAGTGTCTGCCCTTGGCATGTGCGTGGGGCCTTCTGCTTGTCCCT-CTCCCTGCTCTGGACACCCCATTCCTTG--TTTCAGGAATCCCTGGCCACTTCAGGGTCCCAGGGGCCTCCTTGCAGTCAGT-----------TCTCCTTCATTTTTGCTATTTTCATT-AACATTTTATTTTTAAGAACTGTTTATGCCCAAGGC-----AGAGTTGAAAATTATCTTCATCTCACAG----AGTCATATTTTTTCCC---------AGGATGGGAGCAAGCTTAAACATCAATACATATGTG-TTTAGATGCTTCCAGCAAACAGTTGCTTCCTTCTAGTCTTGGTACATGT-CAGAAATCA---------GCGTTTTTGATGCCGAGAGAGAAAATGAACAGAAAGCAACATGAAAGGG------AGAGATTGTTTCTTTAAGATGAATTGAAAACATTAATG----------AAAAAAGAAT---CAATGAGGCTGCATGCTGGCTATTCC----CTGTGGGCAAGA------GGCA-GGGAAT-------------GGGC-TGGA--AAGA------------TCCATTTTGAGTTT---TAGCTTTTCGTTCTGGTGCCAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178930177 658 + 195471971 GCAGCAGCTACTTCTTCAGTGCCTGTTTGCATGGTACA-----AGGTTAGTTCCTTGGTTAGAGATTTGAGC----AGAGATACAAACT--CCCCCACCAACAGGATTTTCATCTCAAGTA-GAATGAGACCAACA-TGG--GAATGAGGATG--AGCCCAAATCTGACTGACACCTAAGCC----GCCCAATGC---------CTCTTCTCTG------CTCTCTCCTTTGTCTTTCATGGACACCTGGGTCC------ATCCTGG------CCCCTTAGGTGGC-------------ACCCTCATTTTCGCCATCCT---------TGTATTTTTCAAAAGCAGCTTATGCCCAAGAC-----AGGCTTGAAAATGACCATCATTTTCCAA----ACTAAATTTCTTCCCCCCCAACCCTGGGATGCGAATGAGCTTACACACCCGTGCACATGTGCCTCAGATGCTTGGAGTGTGCAATTGCTCTCTTCCTGCCTTGGTACATGT-CAAGGGTTGGTAGTATTTCTTTTTTTGATGCTGAGACAAAA----AACAGAAGGTCACATGAAAGGGAGAAATACAGATATTTTTAAAAAGATAAATTTAAACTAGGAATCAG------AAGAAAAAAAAT---CAAGGAGACTGAGTGCTAACTCT--------------CAAGACGGATGGGTA-GTGGACAATGCTACAACAATGCGATGGGCTGAGC------------TCCATCTCCAGTTC---TAGCTTCCCCTCCTTTTGCCTC i mm10.chr1 C 0 C 0 s canFam3.chr7 36514956 690 + 80974532 ataggagaccatttcctcgtgcctgcttccacagCACACT---GACTTAGGTCCTCCATTATAGACATGGGT----GGAGACACAATCTCCCGCTCTCAGG-GGTGTTGTCATGCCAGGCACCATGGGGTAGGGGGTGATGTGAGTGAGGACATTAGCTGCTGTCTGCCCACGGCGTACATGTGGGGCCCAGTGCTCATTTCT-CTCCCACTTGTGAACACCCGTCTCCTTA--GCTCATGAATTCCAGG-CACCTCAGGGCCCCAGGGGCGCCCCATCAGGCAGA-------CAGTCCCCCTTCATTTGTTCTGCTTGCATTCAAGTCTTCTTTTTTAAGAGCTGTTTATGCCTAAGGC-----ATGCTCGAGAATGGTCTTCATCTTACAA----AGTCGGGGTTTTTTCT---------GGGACAGGAGCAAGCGTACACATTGGCCCATATGTG-T-------------------AGATGCTTCCTTCCTGCCTTTGTACATGT-CAAGAATCA-------GCGATGGTTTGATGCTGAGAAAGGGAATGAACAGAAGGCCCCATGAAAGGA-GAAACACAGATTGTTCCTTTAAGATGAAATGATACCATGAATGAGCAAAAAAAAAAAAAAAATCCCCAGTAAAGCCGCACGCTGACTATTCCCTGGCTGTGGGTGATA------AGCT-GAATAT-------------TGGCCTAGA--AATCTCTGTGCTGGCTTCCATTTTTATTTT---TCTTTCTTAGTCCTGATGTcac i canFam3.chr7 C 0 I 6771 a score=1730690.000000 s hg38.chr1_KI270759v1_alt 399377 669 + 425601 TTTTAAGGTTGTCCAGTAATGTAGTCTGATGTGGTC---ATAGAATGATGTCTCCTTTTGCTTTTTTGTTTTGGTTTTTAAATATTAAactgg-tattc----agggccttcggtctccttccagctctagtcctggttaactgtgtcagcctcagtgagt------cacgtcactgtccagctctcagggacctcatctgcagaaagaagACACTCTGCAGACAGCGGCCACTCtaagccccagtgtttccatagcacggcatcgtttt-caaatcaagttcgtgttcattatt---atctcattttattcttcacagcaactcaaggcaggcagggcaggcaGCGTAGGAG----------TTACTATTCTCACATGCC-TTTAAAGACAC--TGTCAGCAGAGGTGGAGGTCCCAGAGCTCGTCTCTTCAGAGCTTGTCTCGTGCCTGGGGTTCCAGG--GCCATCCCACCACCTTGGACTGCTGTCCACGCCTCTC----CTCCTCGTACTGGGAGCCTGCTGGACCCCTGGA-CCTGGGCCAGGCAGCCCATCCCTCTGCCCGGCCACCTCTGGACAAAGCAGGGGACTTGATGCCAG-AGGGGTTGATCCCAGATACCTGCTCTTCAGGCCTGGAATG-ATACAGACTTTTTACTCTGTGCAGGCCTGAACATCAGGAAAGGC-------------------ATCTGGGTTATAATCCAGAA s panTro4.chr1 225157489 665 + 228333871 TTTTAAGGTTGTCCAGTAATGTAGTCTGAGGTGGTC---GTAGAATGATGGCTCCTTTTGCTTTTTTGTTTTGGTTTTTAAATATTAAactgg-tattc----agggccttcggtctccttccagctctagtcctggttaactgtgtcagcctcagtgagt------cacgtcactgtccagctctcagggacctcatctgcagaaagaagACACTCTGCAGACAGCATCCACTCtaatccccagtgtttccatagcacggcatcgtttt-caaatcaagttcgtgttc---atg---atctcattttattcttcacagcaactcaaggcaggcagggcaggcaGCGTAGGAG----------TTACTATTCTCACATGCC-TTTAAAGACAC--TGTCAGCAGAGGTGGAGGTCCCAGAGCTGATCTCTTCAGAGCTTGTCTCGTGCCTGGGG-TCCAGG--GCCATCCCACCACCTAGGGCTGCTGTCCATGCCTCTC----CTCCTCGTAGTGGGAGCCTGCTGGACCCCTGGA-CATGGGCCAGGCAGCCCATTTCTCTGCCCGGCCACCTCTGGACAAAGCAGGGGACTTGATGCCAG-AGGGGTTGATCCCAGATACCTGCTCTTCAGGCCTGGAAGG-ATATAGACTTTTTACTCTGTGCAGGCCTGAACATCAGGAAAGGC-------------------ATCTGGGTTATAATCCAGAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226527914 655 - 229942017 TTTTAAGGTTGTCCAGTAATGTAGTCTGATGTGGTC---ATAGAATGATGGCTCCTTTTGCTTTTTTGTTTTGGTTTTTAAATATTAAactggttattc----agggccttcggtctccttccagctctagtcctagttaactgtgtcagcctcagtgagt------cacgtcactgtccagctctcagggacctcatctgcagaaagaagACAGTCTGCAGACAGCGTCCACTCtaatccccagtgtttccatagcacagcatcgtttt-caaatcaagttcatgttc---att---atctaattttattcttcacaggaactcaaggcaggtagggcacgcagcgtaggag----------ttactattctcaCATCCC-TTTAAAGACACTGTGTCAACAGAGGTGGAGGTCCCAGAGCTC---------------GTCTCGTGCCTGGGGTTCCAGG--GCCATCCCACCACCTTGGGCTGCTGTCCATGCCTTTC----CTCCTGGTACTGGGAGCCTGCTGGACCCCTGGAGCCTGGGCCAGGCAGCTCCTCCCTCTGCCCAGCCATCTCTGGACAAAGTAGGGGACTTGATGCCAG-AGGGGTTGATCCCAGATACCTGCTCTTCAGGCCTGGAAGG-ATACAGACTTTTTACTCTGTGCAGGCCTGAACATCAGGAAAGGC-------------------ATCTGGGTTATAATCCAGAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140419476 669 - 143122389 TTTTAAGGTTGTCCAGTAATGTAGTCTGATGTGGTC---ATAGAATGATGGCTCCTTTTGCTTTTTTGTTTTGGTTGTTAAATATTAAactgg-tattc----agggccttcggtctccttccagctctagtcctggttaactgtgtcagcctcagtgagt------cacgtcactgtctagctcccagggacctcatctgccgaaagaagACACTCTGCAGACAGCGTCCACTCtgatccccagtgtttccatagcacggcatcgtttt-caaatcaagttcatgttc---att---atctcatttgattcctcacagaaactcaaggcaggtggggcaggcagcataggca----------ttgctattctcacattcc-tttaaagacactgtgtcagcagaggtGGAGGTCCCAGAGCTCGTCTCTTCAGAGCTCGTCTGGTGCCTGTGGTTCCAGG--GCCATCCCACCACCGTGGGCTGCTGTCCATGCCTTTC----CTCCTCATACTGGGAGCCTGCTGGACCCCTGGGGCCTGGGCCAGGCAGCCCATCCCTCTGCCCAGCCACCTCTGGACAAAGTAGGGGACGTGTTGCCAG-AGGGGTTGATCCCAGATGCCTGCTCTTCAGGCCTTGAGGG-ATACAGCCTTTTCACTCTGTGCAGGCCTGAGCATCAGGAAAGGC-------------------ATCTGGGTTATAATCCAGAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17121410 626 - 229590362 TTTCAAGGTTGTCTAGTAATGTAGTCTGATGTGGTC---ATAGAATGATGGCTCCTTTTGC-TTTTTGTTTTGGTTTTTAAATATTACactgg-tattc----agggccttcggtctccttccagctctagtcctggttaactgcatcagcctc--tgagt------catgtcactgtccagctctcagggacctcatctgcagaaagaagACACTCTGCAGA---CGTCAACTCtaatccccaatgtttccatagtgtggcatcgtttt-caaatcaagttcatgttc---att---gtctcatttta-tcttcacagcaactcagggcaggcaggg---------taggaa----------ttactactctcacattccttttaaggacactgggtcagCCAACGTGGAGGTCCCAGAGCTC---------------GTCTCGTGCCTGGGGTTCCAGG----------------TTTGGCTGCTGTCCATGCCTTTC----CTCCTCGTACTGAGAGCCTGCTGGACCCCTGGAGCCTGGGCCAGGCAGCCCATCCCTCTGCCCAGCCACCTCTAGACAAAGTAGGGGACTTGATGCCAGAAGGGGTTGATTCCAGATACTTGTTCTTCAGGCCTTGAAGG-ATACAGACTTTTTACTCTGTGCAGGCCTGAACATCAGGAAAGGT-------------------ATCTGGGTTATAATCCAGAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223885357 626 - 227556264 TTTCAAGGTTGTCTAGTAATGTAGTCTGATGTGGTC---ATAGAATGATGGCTCCTTTTGC-TTTTTGTTTTGGTTTTTAAATATTACactgg-tattc----agggccttcggtctccttccagctctagtcctggttaactgcatcagcctc--tgagt------catgtcactgtccagctctcagggacctcatctgcagaaagaagACACTCTGCAGA---CGTCAACTCtaatccccgatgtttccatagtgtggcatcgtttt-caaatcaagttcatgttc---att---gtctcatttta-tcttcacagcaactcagggcaggcaggg---------taggaa----------ttactactctcacattccttttaaggacactgggtcagCCAACGTGGAGGTCCCAGAGCTC---------------GTCTCTTGCCTGGGGTTCCAGG----------------TTTGGCTGCTGTCCATGCCTTTC----CTCCTCGTACTGGGAGCCTGCTGGACCCCTGGAGCCTGGGCCAGGCAGCCCATCCCTCTGCCCAGCCACCTCTAGACAAAGTAGGGGACTTGATGCCAGAAGGGGTTGATTCCAGATACTTGTTCTTCAGGCCTTGAAGG-ATACAGACTTTTTACTCTGTGCAGGCCTGAACATCAGGAAAGGT-------------------ATCTGGGTTATAATCCAGAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16930785 642 - 220367699 TTTCAAGGTTGTCCAGTAATGTAGTCTGATGTGGTC---ATAGAATGATGgctccttttgcttttttgttttggtttttaaatattacacTGG-TATTCTGGAAGGGCCTTCGGTCTCCTTCCAGCTCTAGTCCTGGTTAACTGCATCAGCCTCAGTGAGT------CATGTCACTGTCCAGCTCTCAGGGACCTCATCTGCAGAAAGACGACACTCTGCAGA---CGTCAACTCTAATCCCCGATGTTTCCATAGTGTGGCATCGTTTT-CAAATCAAGTTCGTGTTC---Att---gtctcatttta-tcttcacagcaACTcaaggcaggcagggcaggcaggtTAGGAA----------TTACTACTCTCACATTCTTTTTAAGGACACTGTGTCAGCCGACGTGGAGGTCCCAGAGCTC---------------GTCTCTTGCCTGGGGTTCCAGG----------------TTTGGCTGCTGTCCATGCCTTTC----CTCCTCGTACTGGGAGCCTGCTGGACCCCTGGAGCCTGGGCCAGGCAGCCCATCCCTCTGCCCAGCCACCTCTAGACAAAGTAGGGGACTTGATGCCAGAAGGGGTTAATTCCAGATACTTGTTCTTCAGGCCTTGAAGG-ATACAGACTTTTTACTCTGTGCAGGCCTGAACATCAGGAAAGGT-------------------ATCTGGGTTATAATCCAGAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82733200 647 + 85787240 TTTCAAGGTTGTCTAGTAATGTAGCCTGATGTGGTC---ATAGAATGATGGCTCCTTTTGCTTTTTTGTTTTTGTTTTTAAATATTACactgg-tattctggaagggccttcggtctccttccagctctagtcctggttaactgcatcagcctcagtgagt------catgtcactgtccagctctcagggacctcatctgcagaaagaagACACTTTGCAGA---CGTCAACTCtaatccccaatgtttccatagtgtggcatcgtttt-caaatcaagttcatgttc---att---atctcatttta-tctccacagcaactcagggcaggcaggg---------taggaa----------ttactactctcacattccttttaaggacactgggtcagCCGACGTGGAGGTCCCAGAGCTC---------------GTCTCTTGCCTGGGGTTCCAGG--GCAATCCCACCACCTTTGGCTGCTGTCCATGCCTTTC----CTCCTCGTACTGGGAGCCTGCTGGACCCCTGGAGCCCGGGCCAGGCAGCCCATCCCTCTGCCCAGCCACCTCTGGACAAAGTAGGGGACTTGATGCCAGAAGGGGTTGATTCCAGATACCTGTTCTTCAGGCCTTGAAGG-ATACAGACTTTTTACTCTGTGCAGGCCTGAACATCAGGAAAGGT-------------------ATCCGGGTTATAATCCAGAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14451155 618 - 49578535 TTTCAAGGTTGTCCAGTAATGGAGCCTGATGTGGCC---GTAGAATGATGGCTCA-TTTGCTTTTTTGTTTTGGTTTTTAAATATTAAactgg-tattc----aggccctcaagtctccttcctgctctagtgttgattacctgtgtca-cctca-tgagc------catgtcactgtccagagctcagggaccttgtttgcaaaaagaCGACAG-----------CTTCCACTCTCATCCCAAG-GCTTCCATAACGCATCACAGTTTC-CAAATCAAGTTTGTGCTC---ATCTCATTTTTATTTTCTTCTTCACAGCAACTCAAGGCAGGCAGG----------TAGCAA----------TGACCACTCTCAAGTCACTTTGAAGGACACAGTGCC------------GGCCCCAGAGCTA---------------GCCCCTGGCCTTGGTTTCCAGG----CCACCCATCACCTTTGGCTGCTGTCCATGCCTTCC----CTCCTCATATTGGGACCCTGCTGGACCTCTGGAGCCTGGGCCAGGCAGCCCATCCCTCTGCCCAGCCACCTCTGGACAAAGTAGGGGACTTGAGGCCAG-AAGGGGTGATCCCAGATACTTGCTCTTCAGGCTTTGAAGG-ACACAGACTTTCTACTCTGTGCAGGCCTGAATGTCAGGAAAGAC-------------------ATC-AGGTTAGAATCCAGAA i calJac3.chr19 C 0 C 0 s mm10.chr1 178930835 615 + 195471971 TCTACAGAGGAGCCTGTGAGGGTGTCTGGTGTGCTTGGGATAGGGTGA-GGCTC-----------------TGGTTTCAATTTACTGAGCTGA-GATGT-AGAGGGACCCTGGGTCTGTCTCTAGCCACAGTGCTTATTAGCAATATAACCTTGAGCGAGGACTACATGCATAGCTGCCC------------------CTGTTAAAAGA----ACTCTAC--------TCCATGACAGACCCTCGTGTTTCTGTATCG-GGTGTGGTTTTGCACATCTG--TCACATTT---ATG------TTATGTTCTTCTTGTTGGTGACTCAAGATGGATAGGAGAAGAAGGGGAAGGGACCCCTCCACTTCCTCCTCTTGTGTTGCTGTTAAGGAAGCGATGCAGGCTGAGGTAGTTTTGCCCGGCTGG---------------GAATTTAATGTGAGGTCCCTGCTAAGCTACCCACCCCCATCAACTACTGTCCATTCCCTGCTGCTCTCCCCATTCAGACCTTTTATAACACCCCTCAAAATGAGATCAGG----------CTCTGCCAAGCCATT----------ATGGGGG---------CAA-AGG----AACTCCAGATCCCTGCCCCTCAGGAAAGGAACGCACAAGGACTTTTGTTGCTAT--AGGCCTGCACCCGATGCAAGACACAATGGCCATATGACTCGATTTGTGTTTTGAGCCTAAA i mm10.chr1 C 0 I 380 e canFam3.chr7 36515646 6771 + 80974532 I a score=349938.000000 s hg38.chr1_KI270759v1_alt 400046 137 + 425601 ACGTCCTTTCATATAAGGAAGCAGAGGTATAAATGTCACTCAACTGAGA-CCCCCAAAA--GGGAGGGACTCTCCCCACCTCAACTT---GAATTATTTACTTGATTGATTgatagtgaatagtgtggtagcgtctctcaaat s panTro4.chr1 225158154 130 + 228333871 ACGTCCTTTCATATAAGGAGGCAGAGGTATAAATGTCACTCAACTGAGACCCCCCAAAA--GGGAGGGACTCTCCCCACCTCAGCTT---GAACTATTTAC--------TTGATAGTGAATAGTGTGGTAGCGTCTCTCAAAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226528569 129 - 229942017 ACATCCTTTCATATAAGGAGGCAGAGGTATAAATGTCACTCAACTGAGA-CCCCCAAAA--GGGAGGGAGTCTCCCCACCTCAGCTT---GAACTATTTAC--------TTGATAGTGAATAGTGTGGTAGCGTCTCTCAAAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140420145 129 - 143122389 ACATCCTTTCATATAAGGAGGCAGAGGTGTAAATGTCACTCAACTGAGA-CCCCCAAAA--GGGAGGGACTCTCCCCACCTCAGCTT---GAAGTATTTAC--------TTGACAGTGAATAGTGTGGCAGAGTCTCTCAAAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17122036 129 - 229590362 ACATCCTTTCATAAAAGGGGGCAGAAGTATAACTGTCACTCAACTGAGA-CCCCCAGAA--GGGAGGGACTTTCCCCACCTCAGCTT---GAAGTATTTAC--------TTGATAGTGAATAGCGTGGTAGAGTCTCTCAAAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223885983 129 - 227556264 ACATCCTTTCATAAAAGGGGGCAGAAGTATAACTGTCACTCAACTGAGA-CCCCCAGAA--GGGAGGGACTCTCCCCACCTCAGCTT---GAAGTATTTAC--------TTGATAGTGAATAGCGTGGTAGAGTCTCTCAAAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16931427 129 - 220367699 ACATCCTTTCATAAAAGGGGGCAGAAGTATAACCGTCACTCAACTGAGA-CCCCCAGAA--GGGAGGGACTCTCCCCACCTCAGCTT---GAAGTATTTAC--------TTGATAGTGAACAGCATGGTAGAGTCTCTGAAAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82733847 129 + 85787240 ACATCCTTTCATAAAAGGGGGCAGAAGTATAACTGTCACTCAACTGAGA-CTCCCAGAA--GGGAGGGACTCTCCCCACCTCAGCTT---GAAGTATTTAC--------TTGATAGTGAATAGCATGGTAGAGTCCCTCAAAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14451773 127 - 49578535 TCATCCTTTCATAGAAGGAGGCAGAGGTCTAAATGTCATTCAACTGAGA-CTCCCCAAAGCGGGAGGGACTGTCGCCGCCTCAGCTTGAAGAAGTATTTAC--------CTAATGGCTGATAGTGCTG-------TCTCAAAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178931450 380 + 195471971 I e canFam3.chr7 36515646 6771 + 80974532 I a score=24490.000000 s hg38.chr1_KI270759v1_alt 400183 8 + 425601 cctgggat s panTro4.chr1 225158284 8 + 228333871 CCTGGGAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226528698 8 - 229942017 CCTGGGAT i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140420274 8 - 143122389 CCTGGGAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17122165 8 - 229590362 CCTGCGAT i rheMac3.chr1 C 0 I 4 s macFas5.chr1 223886112 8 - 227556264 CCTGCGAT i macFas5.chr1 C 0 I 4 s papAnu2.chr1 16931556 8 - 220367699 CCTGCGAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82733976 8 + 85787240 CCTGCGAT i chlSab2.chr25 C 0 I 4 s calJac3.chr19 14451900 8 - 49578535 CCTGGGAT i calJac3.chr19 C 0 C 0 s mm10.chr1 178931830 8 + 195471971 TCAAAGAT i mm10.chr1 I 380 C 0 e canFam3.chr7 36515646 6771 + 80974532 I a score=1000.000000 s hg38.chr1_KI270759v1_alt 400191 1 + 425601 c s panTro4.chr1 225158292 1 + 228333871 C i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226528706 1 - 229942017 C i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140420282 1 - 143122389 C i nomLeu3.chr5 C 0 C 0 s mm10.chr1 178931838 1 + 195471971 C i mm10.chr1 C 0 C 0 e canFam3.chr7 36515646 6771 + 80974532 I e calJac3.chr19 14451908 0 - 49578535 C e rheMac3.chr1 17122173 4 - 229590362 I e chlSab2.chr25 82733984 4 + 85787240 I e papAnu2.chr1 16931564 0 - 220367699 C e macFas5.chr1 223886120 4 - 227556264 I a score=2915.000000 s hg38.chr1_KI270759v1_alt 400192 15 + 425601 catcctggatcctcc s panTro4.chr1 225158293 15 + 228333871 CATCCTGGATCCTCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226528707 15 - 229942017 CATCCTGGATCCTCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140420283 15 - 143122389 CCTCCTGGATCCTCC i nomLeu3.chr5 C 0 C 0 s papAnu2.chr1 16931564 5 - 220367699 ------GGGGC---- i papAnu2.chr1 C 0 C 0 s calJac3.chr19 14451908 4 - 49578535 ------GGAG----- i calJac3.chr19 C 0 C 0 s mm10.chr1 178931839 15 + 195471971 CGTGTTGGAGGCAGC i mm10.chr1 C 0 C 0 e canFam3.chr7 36515646 6771 + 80974532 I e rheMac3.chr1 17122173 4 - 229590362 I e chlSab2.chr25 82733984 4 + 85787240 I e macFas5.chr1 223886120 4 - 227556264 I a score=514325.000000 s hg38.chr1_KI270759v1_alt 400207 196 + 425601 atggctggagGTAGGGGGAGCTAGAATGTCACCTTATTGGTCAGTAGAATCTCAGAAAAAACCTTAAGGATCTAAATACTGGT-------------------------------------AAA---GAGTGTTCCTTTCAACCCAAAAGAGGCCGAGAATCAGGCAGGAGGGAACTCTGCAGTGGCCTAAGGCAAGCGAACTAGACCTTTAGACCAAGGGGTAGATGTGGGGGTGG s panTro4.chr1 225158308 233 + 228333871 ATGGCTGGAGGTAGGGGGAGCTAGAATGTCACCTTATTGGTCAGTAGAATCTCAAAAAAAACCTTAAGGATCTAAACACTGGTAAagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaa---GAGTGTTCCGTTCAACCCAAAAGAGGCCGAGAGTCAGGCAGGAGGGAGCTCTGCGGTGGCCTAAGGCAAGCGAATTAGACCTTTAGGCCAAGGGGTAGATGTGGGGGTGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226528722 196 - 229942017 ATGGCTAGAGGTAGGGGGAGCTAGAATGTCACCTTATTGGTCAGTAGAATCTCAAAAAAAACCTTAAGGATCTAAACACTGGT-------------------------------------AAA---GAGTGTTCTGTTCCACCCAAAAGAGGCCGAGAATCAGGCAACAGGGAACTCTGCGGTGGCCTAAGGCAGGCGAATTAGACCTTTAGACCAAGGGGTAGATGTGGGGGTGG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140420298 193 - 143122389 ATGGCTGGAGGT-GGGGGAGCTAGAATGTCACCTTATTGGTCAGTAGAATCTCA-CAAAAACGTTAAGGATCTAAAC-CTGGT-------------------------------------AAA---GAGTGTTCCGTTCCACCCAAAAGAGGCCGAGAATCAGGCAGGAGGGAACCCTGCGGTGGCCTGAGGCAGGAGAATTAGACCTTTAGACCAAGGGCTAGATGTGGGGGTGG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17122177 195 - 229590362 ATGGCTGGAGGTAGGGGAAGCGAGAATGTCCCCGTGTTAGTCAGTAGAATCTCA-AACACACGTTAAGGATCTAAACACTGGT-------------------------------------AAA---GAGTGTTCCGTTCCACCCAAAAGAGGCTGAGGATCGGGCAGGAGGGAACCCTGCGGTGGCCTAAGGCAGGCGAGTTAGATCTTTAGACCAAGGGGTAGATGTGGGGGTGG i rheMac3.chr1 I 4 C 0 s macFas5.chr1 223886124 195 - 227556264 ATGGCTGGAGGTAGGGGAAGCGAGAATGTCCCCGTGTTAGTCAGTAGAATCTCA-AACACACGTTAAGGATGTAAACACTGGT-------------------------------------AAA---GAGTGTTCCGTTCCACCCAAAAGAGGCTGAGGATCGGGCAGGAGGGAACCCTGCGGTGGCCTAAGGCAGGCGAGTTAGACCTTTAGACCAAGGGGTAGATGTGGGGGTGG i macFas5.chr1 I 4 C 0 s papAnu2.chr1 16931569 194 - 220367699 -TGGCTGGAGGTAGGGGAAGCGAGAATGTCCCCTTGTTGGTCAGTAGAATCTCA-AACACACGTTGAGCATCTAAACACTGGT-------------------------------------AAA---GAGTGTTCCATTCCACCCCAAAGAGGCTGAGGATCAGGCAGGAGGGAACCCTGCGGTGGCCTAAGGCAGGCGAGTTAGACCTTTAGAGCAAGGGGGAGATGTGGGGGTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82733988 194 + 85787240 ATGGCTGGAGGTAGGGGAAGCGAGAATGTCCCCTTGTT----AGTAGAATCTCA-AAAACACATTAAGGATCTAAACACTGGT-------------------------------------AAAGAGGAGTGTTCCGTTCCACCCAAAAGAGGCTGAGGATCGGGCAGGAGGGAACCCTGCGGTGGCCTAAGGCAGGCGAGTTAGACCTTTAGACCAAGGAGTAGATGTGGGGGTGG i chlSab2.chr25 I 4 C 0 s calJac3.chr19 14451912 179 - 49578535 ACAGCTGGA----GGGCGGGCTAGAATGTCACCTTATTGCTCAGTATCATCTCA---AAAACATTAAGGATTTAAACACTGGT---------------------------------------A---GAGTGTCCCATTCCACCCAAGAGAGGCTGAGGATCGGGCAGGAGGGAACACTGCGGTTGCCTGAGGTAGGCACGTCAGAT-------GCAAGGGGTAGAT-TGGGGGTGG i calJac3.chr19 C 0 C 0 s mm10.chr1 178931854 172 + 195471971 GAGGGTAGGCATCGGAAGTTCTAGACCACCTCCCTGTTCCTTAGAATTGTCTCT----GAATGTTAAGAAGCTAGAAACCAG--------------------------------------AAT---GGGTGTCAC-TTCCTCT-------GGCTGAGGGCCAGGCAGGAGGGGATGCTTATGTGGCACAACTCAGTTG-------CCCTTAGCCCAGAG----GAGGTGGGGGAGG i mm10.chr1 C 0 C 0 e canFam3.chr7 36515646 6771 + 80974532 I a score=10378799.000000 s hg38.chr1_KI270759v1_alt 400403 3283 + 425601 CAGCTCCAGGCTGAGCCGTCG----------GGAGTTGCTTCTCACCCTGTTTGCTCTGC-GTCTCCATCAGGCTCTTCCTCTCTTGCAGTTGACTTGGAGCAGGTTTGGGAGCTGGATTCCCTGGAGTACCTGGAGGCACTGGAGTGTGTGACGGAGCGCCTGGAGAGCCGTGTCAACTTCTGCAAGGCCCATCTCATGATGATCACCTGCTTCGACATCACCTCCAGGCGCCGGTAGATGA--GCCAGACCCTTGTCCTAGTGGTCCCCC-GCTCCCCAGGACTTCAGAGATGTTGCACGCCCCTAGGCCCTCTGTGCTGG-GGCATCAAAGACAAT-GAATGAGGATGAAGGTTGGTGGCAAGTCTGGAGCGGGCGTTGAGCGGAAGGCGAGTTTTCTTTTGTTTTCTGTAGG----AAAGGTGCAAACGTCAAACA-----CCGTGGAAGGAGAAAAGGATGGGAAGCCCGAGGGGTGTCCAAGCCCTGTGAGACT-GAAAAAGCACTTTGAGGAACCTTAAAGACCTTGTTTGTACATAAGAACTGCTAGCAAAAGAGACCTCACTCTTCTCTTGCTTTCGTGAGAAAGGA-GGGGCGTGGATGTAGGATTGCTGTGGAAAGCGAACACAAAACA-------------ACCCAGAATGACTGATTAAGTGCCTTGCAAATCTTTATTATTATCCAAACATTTATGTTCATACTTTCTTGTGTACAGATGGTGCTAGTCAAGATGAAAACAACA-------AAACAAACAAGAAAA------AC--------ATTTTGGAAATGTATTCACAGCTCTTTTTCTCTTGGTG-TTTTATCCTATTTCTGACTTGC----TGTTTCTAAGTAAGTTGTGTTTGTAGAGCTATTTCTTAATCAGTATTGCTTATGAATAAATATTACCTGTCTTTTATGGTTATTCTGGTGAGGCCACTCA-AACAG-----AGAGACTTCCCTCGGCACGAGCCAGTGTGTGTGTTTCCAAAGTAGGTTTGGAGCAGCAGGTGAC-CTCGATGCCACATCCCAACAAGCAGCGTGGTCA---GGTAGACCCAGAAGGTTGA--------TTGTGGGGCAGGT--------GCTTTAGAGAACAGGTGAGGAGACGGCACCTGCAGCACAGGGGAGGAGGAGTCCTTTGCGACCTGGGCCCTCCCTGCTCCTGGGAGGTGGGCCG--TATGTTCTGTAGACCGTTTGCCCCCCTCAAGTCCTC-CACACATG-TGGTTCCTTGACCCACAAATCCACAGTTTGCGTGGCCCTCAAAA-----------------TTCATATTCATTTTTATTCCAAAAAGTCTTGAACGAAAGCTGGAACCAATTCACCAGAGCCATATTTCTTTCTTTAGTATTTTCTAGTGTTGTGTTGTA----GATTGAT-TAAA---GTGGGTTTTTCCCCAGCTGAGAGACCTTCTCAGGCTTGT------TCAGAGACT-TCAACTGTATTGGATTAGAAGAAG---GATTCTTGAGACTGTA---CATC-TTG--TCTGTTGTCCAG----------AGTAC------------AAGGATTTCAGCTCTCCTGTGTCCCAAAGCCTCTATGCCAAGAAGGGAC-AGGCTTGT-CCTCTCAGTCTTTGCTC------------------------------------------------------------------CTGCCCAAAGGCAGAGAGAGC------TTCCCC-TCCATAA----CTCACACGACCCTGGATAGGCAGAA--CATAGCTGAA-GAC-TATGGATGTCCAGGTCTTGGCTCCC------AACAACTCAGGACCTCA------AATTCAGATGTTCCtccctataacaattcccttaggaattatgatacccattttagtgattgatagaaacctggggtacagagtggtcaagggatttccctgaTAAAAGCTGTGGTGCTG------ATGATAGTGCAGCCCAGAA-------TCTAAG----AGTCCCTGCAGCCTTCGCATCGAGGATGGTACTTAGGCGTGTGCAGAGCACGCTTCCCTTTTGCCCTCAAATGCAGCATATCTTCATGAGCCTATTTATTTCCAAGCTAGGCTGTCTTTATTAACCAACAACTCAGCCCCAGCCACTCCCCAAGCGGGGAAAAAAA--CACTACGTTTCTTGGTCAGTGTACCT-CTGGACA-C-TGCAG-CCCA-------------CACAGCTG----------------------GCTGAACTCGGTAAATGGGAACCGAAGTCTTGTGAGCTTCACATGACCTGATCCTTTGTT-ATCAGAACAGGGTTCAGGTGGCCCTGTTGGCTCATGTGCTTT--------------------------GGAAGCCAGCTCCCTGGGTCACG-AGTCTGGCTTTGCACTTTCCATAAGAGTCTGCTTCTATGCAAAGGTGCAAACAGGAGACATGCCCAAATCTGCTGGCTGAACAGGCTAAACTACAGTGAGAGGCTGCTCTGGCATGGCTCGTTCTTCCTTCTGTGTATCTCCCAAGTCTGACAA-------GTGTGTTGCCCTGGGAAGCAGGACC-TCCCTGAGCTCCTTAACCT-----------------TGACC-----CCATTCTGCAGGACAGTCGCATGCTCTGGGCTCGCCTCTGG-CCTCAAAGCACTTGTGTAAGTGGGCTTGCTTAACAGTAATATCCTTGGAGGCTTCTGGACCCAAAGGGAAGCCAATCCTTCGAGTTTGCCATTGGG------CTGCTGGTTGCTGGTTTCAAACA-----------TATAGTTC-ATGAAAAGTCTTTAA-TTGGAGATTTTCAAAGGTGAATATTCT-GTTTTTGTTGGAAAGAAACTCATC---TGATGAGTCATCGATGAGTTTGGCTTTCGCCCCTGC-CACATCCTC---CCC------TGAGGTTCCTTCCATGCTGCACTGCCTTCCTTTA----GCCAGTGACAGAGCCTGGTGCCCTTCCTGGACTGA-AACCG------------------ATGGAATC--CT-------------TCCGAGGGGAGTGGCATTCGGCTTGCCTCCTGCCTAAATCTGCTTTTATCCATTTGTAGCAACTTTATGCTGTAACAAAA-GGCGGAAGGAAACCAAGAGTTCTCTTAGCAAGTCAGACT-CCTTCCC-AAG------------------------------------ATGGC-AATCACAGAACACCTCGCAGGATCTCGCAGGC---------------------CACGGTGAAGGAGAATGCTTT------ATGT----TGATG--------TTGTCCATTC----TCTCTCTCTTCTCTTTGC--------TTTTTTTTGACCTAAATAAGCTGCAAACATGTTAATTTACCA-A-TA------------TTGATAAACCACATGAAGAAATCAGGCATTTTACGTTATGATGTGCTTGTTCCTGTCTCTGCCTATAAATTGACTGTATTGATGATG--------------AAGGAAGGAGTTCCGGCTGACCATTCTGAAGCAGTCCCAGTCACGGG--AGGATGCCTTACCCAGTGGCCAGACAT--GATAGTTCCAGGTCTCCCCTTGGTTTTGGTGATAGAGAACC-----CAAGGAGGCAAGGGGG----------AATATCAACGAACCCATTTCTATTTCATTACCCACAAGCGAAAGGACTAGAAAAAAA-----TATTTGAAATTAACATTTAGATGCATAGGTC-TAACTCCTTGTGTG-AACCTGTCCTCCTCACC s panTro4.chr1 225158541 3288 + 228333871 CAGCTCCAGGCTGAGCCGTCG----------GGAGTTGCTTCTCACCCTGTTTGCTCTGC-ATCTCCATCAGGCTCTTCCTCTCTTGCAGTTGACTTGGAGCAGGTTTGGGAGCTGGATTCCCTGGAGTACCTGGAGGCACTGGAGTGTGTGACAGAGCGCCTGGAGAGCCGTGTCAACTTCTGCAAGGCCCATCTCATGATGATCACCTGCTTCGACATCACCTCCAGGCGCCGGTAGATGA--GCCAGACCCTTGTCCTAGTGGTCCCCC-GCTCCCCAGGACTTCAGAGATGTTGCACGCCCCTAGGCCCTCTGTGCTGG-GGCATCAAAGACAAT-GAATGAGGATGAAGGTTGGTGGCAAGTCTGGAGCGAGCGTTGAGTGGAAGGCGAGTTTTCTTTTGTTTTCTGTAGG----AAAGGTGCAAACGTCAAACA-----CCGTGGAAGGAGAAAAGGATGGGAAGCCCGAGGGGTGTCCAAGCCCTGTGAGACT-GAAAAAGCACTTTGAGGAACCTTAAAGACCTTGTTTGTACATAAGAACTGCTAGCAAAAGAGACCTCACTCTTCTCTTGCTTTCGTGAGAAAGGA-GGGGGGCGGATGTAGGATTGCTGTGGAAAGCGAACACAGAACAACAACAAA--AAGACCCAGAATGACTGATTAAGTGCCTTGCAAATCTTTATTATTATCCAAACATTTATGTTCATACTTTCTTGTGTACAGATGGTGCTAGTCAAGATGAAAACAACA-------AAACAAACAAGAAAA------AC--------ATTTTGGAAATGTATTCACAGCTCGTTTTCTCTTGGTG-TTTTATCCTATTTCTGACTTGC----TGTTTTTAAGTAAGTTGTGTTTGTAGAGCTATTTCCTAATCAGTATTGCTTATGAATAAATGTTACCTGTCTTTTATGGTTATTCTGGTGAGGCCACTCA-AACAG-----AGAGACTT-CCTCGGCACGAGCCAGTGTGTGTGTTTCCAAAGTAGGTTTGGAGCAGCAGGTGAC-CTCGATGCCACATCCCAACAAGCAGTGCGGTCAG--GGTAGACCCAGAAGGTTGA--------TTGTGGGGCAGGT--------GCTTTAGAGACCAGGTGAGGAGATGGACCCTGCAGCACAGGGGAGGAGGAGTCCTTTGCGACCCGGGCCCTCCCTGCTCCTGGGAGGTGGGCTG--TATGTTCTGTAGACAGTTTGCCCCCCTCAAGTCCTC-CACATGTG-TGGTTCCTTGACCCACAAATCCACAGTTTGCATGGCCCTCAAAA-----------------TTCATATTCATTTTTATTCCAAAAAGTCTTGAAGGAAAGCTGGAACCAATTCACCAGAGCCATA----TTTCTTTAGTATTTTCTAGTGTTGTGTTGTA----GATTGAT-TAAA---GTGGGTTTTTCCCCAGCTGAGAGACCTTCTCAGGCTTGT------TCAGAGACT-TCAACTGTATTGGATTAGAACAAG---GATTCTTGAGACTGTA---CATC-TTG--TCTGTTGTCCAG----------AGTAC------------AAGGATTTCAGCTCTCCTATGTCCCAAAGCCTCTATGCCAAGAAGGGAC-AGGCTTGT-CCTCTCAGTCTTTGCTC------------------------------------------------------------------CTGCCCAAAGGCAGAGAGAGC------TTCCCC-TCCATAA----CTCACACAACCCTGGATAGGCAGAA--CATAGCTGAA-GAC-TATGGATGTCCAGGTCTTGGCTCCC------AACAACTCAGGACCTCA------AATTCAGATGTTCCtccttataacaattcccttaggaattatgatacccattttagtgattgatagaaacctggggtacagagtggtcaagggatttccctgaTAAAAGCTGTGGTGCTG------ATGATAGTGCAGCCCAGAA-------TCTAAG----AGTCCCTGCAGCCTTCGCATCGAGGATGGTACTTAGGCGTGTGCAGAGCACGCTTCCCTTTTGCCCTCAAATGCAGCATATCTTCATGAGCCTATTTATTTCCAAGCTAGGCTGTCTTTATTAACCAACAACTCAGCCCCAGCCACTCCCCAAG-GGGGGAAAAAA--CACTACATTTCTT-GTCAGTGTAGCT-CTGGACA-C-TGCAG-CCCA-------------CACAGCTG----------------------GCTGAACTCGGTAAATGGGAACCGAAGTCTTGTGAGCTTCACATGACCTGATCCTTTGTT-ATCAGAACAGGGTTCAGGTGGCCCTGTTGGCTCATGTGCTTT--------------------------GGAAGCCAGCTCCCTGGGTCACG-AGTCCGGCTTTGCACTTTCCATAAAAGTCTGCTTCTATGCAAAGGTGCAAACAGGAGACATGCCCAAATCTGCTGGCTGAACAGGCTAAACTACAGTGAGAGGCTGCTCTGGCATGGCTCGTTCTTCCTTCTATGCATCTCCCAAGTCTGACAA-------GTGTGTTGCCCTGGGAAGCAGGACC-TCCCTGAGCTCCTTAACCT-----------------TGACC-----CCATTCTGCAGGACAGTCGCGTGCTCTGGGCTCGCCTCTGG-CCTCAAAGCACTTGTGTAAGTGGGCTTGCTTAACAGTAATATCCTTGGAAGCTTCTGGACCCAAAGGGAAGCCAATCCTTCGAGTTTGCCGTTGGG------CTGCTGGTTGCTGGTTTCAAACA-----------TATAGTTC-ATGAAAAGTCTTTAA-TTGGAGATTTTCAAAGGTGAATATTCT-GTTTTTGTTGGAAAGAAACTCATC---TGATGAGTCATCGGTGAGTTTGGCTTTTGCCCCTGC-CACATCCTC---CCC------TGAGGTTCCTTCCATGCTGCACTGCCTTCCTTTA----GCCAGTGACAGAGCCTGGTGCCCTTCCTGGACTGA-AACCG------------------ATGGAATC--CT-------------TCCGAGGGGAGTGGCATTCGGCTTGCCTCCTGCCTAAATCTGCTTTTATCCATTTGTAGCAACTTTATGCTATAACAAAA-GGTTGAATGAAACCAGGAGTTCTCTTAGCAAGTCAGACT-CCTTCCC-AAG------------------------------------ATGCC-AATCACAGAACACCTCGCAGGACCTCGCAGGC---------------------CACAGTGAAGGAGAATGCTTT------ATGT----TGATG--------TTGTCCATTC----TCTCTCTCTTCTCTTTGC--------TTTTTTTTGACCTAAATAAGCTGCAAACATGTTAATTTACCA-A-TA------------TTGATAAACCACATGAAGAAATCAGGCATTTTACGTTATGATGTGCTTGTTCCTGTCTCTGCCTATAAATTGACTGTATTGATGATG--------------AAGGAAGGAGTTCCGGCTGACCATTCTGAAGCAGTCCCAGTCACGGG--AGGATGCCTTACCCAGTGGCCGGACAT--GATAGTTCCAGGTCTCCCCTTGGTTTTGATGATAGAGAACC-----CAAGGAGGCAA-GGGG----------AATGTCAAAGAACCCATTTCTATTTCATTACCCACAAGCGAAAGGACTAGAAAAAAA-----TATTTGAAATTAACATTTAGATGCATAGGTCTTAATTCCTTGTGTG-AACCTGTCCTCCTCACC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226528918 3279 - 229942017 CAGCTCCAGGCTGAGCCGTCG----------GGAGATGCTTCTCACCCTGTTTGCTCTGC-ATCTCCATCAAGCTCTTCCTCTCTTGCAGTTGACTTGGAGCAGGTTTGGGAGCTGGATTCCCTGGAGTACCTGGAGGCACTGGAGTGTGTGACGGAGCGCCTGGAGAGCCGTGTCAACTTCTGCAAGGCCCATCTCATGATGATCACCTGCTTCGACATCACCTCCAGGCGCCGGTAGATGA--GCCAGACCCTTGTCCTAGTGGTCCCCT-GCTCCCCAGGACTTCAGAGATGTTGCACGCCCCTAGGCCCTCTGTGCTGG-GGCATCAAAGACAAT-GAATGAGGATGAAGGTTGGTGGCAAGTCTGGAGCGAGCGTTGAGCGGAAGGCGAGTTTTCTTTTGTTTTCTGTAGG----AAAGGTGCAAACGTCAAACAAACACCCGTGGAAGGAGAAAAGGATGGGAAGCCCGAGGGGTGTCCAAGCCCTGCGAGACT-GAAAAAGCACTTTGAGGAACCTTAAAGACCTTGTTTGTACATAAGAACTGCTAGCAAAAGAGACCTCACTCTTCTCTTGCTTTCATGAGAAAGGGTGGGGGGTGGATGTAGGATTGCTGTGGAAAGCGAACACAAAACA---ACAAA--AAGACCCAGAATGACTGATTAAGTGCCTTGCAAATCTTTATTATTATCCAAACATTTATGTTCATACTTTCTTGTGTACAGATGGTGCTAGTCAAGATGAAAACAACAAAACAACAAACAAACAAGAAAA------AC--------ATTTTGGAAATGTATTCACAGCTCGTTTTCTCTTGGTG-TTTTATCCTATTTCTGACTTGC----TGTTTCTAAGTAAGATGTGTTTGTAGAGCTATTTCCTAATCAGTATTGCTTATGAATAAATGTTACCTGTCTTTTATGGTTATTCTGGTGAGGCCACTCA-AACAG-----AGAGACTT-CCTCGGCACAAGCCAGTGTGTGCGTTTCCAAAGTAGGTTTGGAGCAGCAGGTGAC-CTCGATGCCACATCCCAACAAGCAGCGTGGTCAG--GGCAGACCCAGAAGGTTGA--------TTGTGGGGCAGGT--------GCTTTAGAGAACAGGCAAGGAGACGGACCCTGCAGCACGGGGGAGGAGGAGTCCTTTGGAACCTGGGCCCTCCCTGCTCCTGGGAGGTGGGCTG--TGTGTTCTGTAGACAGTTTGCCCCACTCAAGTCCTC-CACATGTG-TGGTTCCTTGACCCACAAATCCACAGTTTGCATGGCCCTCAAAA-----------------TTCATATTCATTTTTATTCC--AAAGGCTTGAAGGAAAGCTGGAACCAATTCACCAGAGCCATA----TTTCTTTAGTATTTTCTA-----GTGTTGTA----GATTGAT-TAAA---GTGGGTTTTTCCCCAGCTGAGAGACCTTCTCAGGCTTGT------TCAGAGACT-TCAACTGTATTGGATTAGAACAAG---GATTCTTGAGACTGTACATCATC-TTC--TCTGTTGTCCAG----------AGTAC------------AAGGATTTCAGCTCTCCTATGTCCCAAAGCCTCTATGCCAAGAAGGGAC-AGGCTTGT-CCTCTCAGTCTTTGCTC------------------------------------------------------------------CTACCCAAAGGCAGAGAGAGC------TTCCCC-TCCATAA----CTCACACAACCCTGGATAGGCAGAA--CATAGCTGAA-GAC-TATGGATGTCCAGGTCTTGGCTCCC------AACAACTCAGGACCTCA------AATTCAGATGTTCTtccctataacaattcccttaggaattattatacccattttagtga-tgatagaaacctggggtacagagtggtcaagggatttccctgaTAAAAGCTGTGGTGC---------TGATAATGCAGCCCAGAA-------TCTAAG----AGTCCCTGCAGCCTTCACATCAAGGATGGTACTTAGGCGTGTGCAGAGCACGCTTCCCTTTTGCCCTCAAATGCAGCATATCTTCATGAGCC----TATTTCCAAGCTAGGCTGTCTTTATTAACCAACAGCTCAGCCCCAGCCACTCCCCAA--GGGGGGAAAAA--CACTATGTTTCTTGGTCAATGTACCT-CTGGACA-C-TGCAG-CCCA-------------CACAGCTG----------------------GCTGAACTTGGTAAATGGGAACCGAAGTCTTGTGAGCTTCACATGACCTGATCCTTCGTT-ATCAGAACAGGGTTCAGGTGGCCCTGTTGGCCCATGTGCTTT--------------------------GGAAGCCAGCTCCCTGGGTCACA-AGTCTGGCTTTGCACTTTCCATAAGAGTCTGCTTCTATGCGAAGGTGCAAACAGGAGACATGCCCAAATCTGCTGGCTGAACAGGCTAAACTACAGTGAGACGCTGCTCTGGCACGGCTCGTTCTCCCTTCTATGCATCTCCCAAGTCTGACAA-------GTTTGTTGCTCTGGGAAGCAGCACC-TCCCTGAGCTCCTTAACCT-----------------TGACC-----CCATTCTGCAGGACAGTCGCGTGCTCTGGGCTTGCCTCTGG-CCTCACAGCACTTGTGTAAGTGGGCTTGCTTAACAGTAATATCCTTGGAAGCTTCTGGACCCAAAGGGAAGCCAATCCTTCGAGTTTGCCACTGGG------CTGCTGGTCGCTGATTTCAAACA-----------TATAGTTC-CTGAAAAGTCTTTAA-TTGGAGATTTTCAAAGGTGAATATTCT-GTTTTTGTTGGAAAGAAACTCATCTGATGATGAGTCATCGGTGAGTTTGGCTTTCACCCC-GC-CACATCCTC---CCC------TGAGGTTCCGTCCATGCTGCACCGCCTTCCTTTA----GCCAGTGACAGAGCCTGGTGCCCTTCCTGGACTGA-AACCG------------------ATGGAATT--CT-------------TCCGAGGGAAGTGGCATTCGGCTTGCCTCCTGCCTAAATCTGCTTTTATCCATTTGTAGCAACTTTATGCTATAACAAAA-GGTTGAATGAAACCAAGAGTTCTCTTAGCAAGTCAGACTGGCTTCCC-AAG------------------------------------ATGCC-AATCACAGAACACCTCACAGGATCCCGCAGGC---------------------CATGGTGAAGGAGAATGCTTT------ATGT----TGATG--------TTGTCCATTC----TCTCTCACTTCTCTTTGC--------TTTTTTTTGATCTAAATAAGCTGCAAACATGTTAATTTACCA-A-TA------------TTGATAAACCACGTGAAGAAATCAGGCATTTTACATTATGATGTGCTTGTCCCTGTCTCCGTCTATAAATTGACTATATTGCTGATG--------------AAGGAAGGAGTTCCGGATGACCATTCTGAA-CAGTCCCAGTCACGGA--AGGATGCCTTACCCAGTGGCCAGACAT--GATAGTTCCAGGTCTCCCCTTGGTTTTGGTGATAGAGAACC-----CAAGGAGGCAA-GGGG----------AATGTCAAAGAACCCATTTCTATTTCATTACCCACAAGTGAAAGGACTAGAAAAAAA-----TATTTGAAATTAACATTTAGATGCAT----------TCCTTGTCTGAAACCTGTTCTCCTCACC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140420491 3312 - 143122389 CAGCTCCAAGCTGAGCCGTGG----------GGAGATGCTTCTCACCCTGTTTGCTCTGC-GTCGCCATCAAGCTCTTCCTCTCTTGCAGTTGACTTGGAGCAGGTTTGGGAGCTGGATTCCCTGGAGTACCTGGAGGCACTGGAGTGTGTGACGGAGCGCCTGGAGAGCCGTGTCAACTTCTGCAAGGCCCATCTCATGATGATCACCTGCTTCGACGTCACCTCCAGGCGCCGGTAGATGA--GCCAGACCCTTGTCCTGGCGGTCCCCT-GCTCCCCAGGACTTCAGAGATGTTGCACGCCCCTCGGCCCTCTGTGCTGG-GGCATCAAAGACAAT-GAATGAGGATGAAGGTTGGTGGCAAGTCTGGAGCGAGCGTTGAGCGGAAGGCGAGTTTTCTTTTGTTTTCTGTAGG-----AAGGTGCAAACGCCAAACAAACA-CTGTGGAAGGAGAAAAGGATGGGAAGCCCGAGGGGTGTCCAAGCTCTGCGAGACT-GAAAAAGCACTTTGAGGAACCTTAAAGACCTTGTTTGTACATAAGAACTGCTAGCAAAAGAGACCTCACTCTTCTCTTGCTTTCGTGAGAAAGGA-GGGGGGTCGACGTAGGATTGCTGTGGAAAGCGAACACAAAACAACAACAAA--AAGACCCAGAATGACTGATTAAGTGCCTTGCAAATCTTTAGTATTACCCAAACATTTATGTTCATACTTTCTTGTGTACAGATGGTGCTAGTCAAGATGAAAACAACA-------AAACAAACAAGAAAA------AC--------ATTTTGGAAACGTATTCACAGCTCGTTTTCTCTTGGTG-TTTTATCCTATTTCTGACTTGC----TGTTTCTAAGTAAGTTGTGTTTGTAGAGCTATTTCCTAATCAGTATTGCTTATGAATAAATGTTACCTGTCTTTTATGGTTATTCTGGTGAGGCCACTCA-AACAG-----AGAGACTT-CCTCGGCGCGAGCCAGTGTGTGTGTTTCCAAAGTAGGTTTGGAGCAGCAGGTGAC-CTCGATGCCACATCCCAACAAGCAGCGTGGTCAG--GGCAGACCCAGAAGGTTGATTGATTGGTTGTGGGGCAGGT--------GCTTTAGAGAACAGGCGAGGAGACGGACCCTGCAGCACGGGGGAGGAGGAGTCCTTTGCGACCTGGGCCCTCCCTGCTCCTGGGTGGTGGGCTG--TGTGTTCTGTAGACAGTTTGCCCCCCTCAAGTCCTC-CACACATG-TGGTTCCTTGACCTACAAATCTACAGTTTGCAATGCCCTCAAAA-----------------TTCATATTCATTTTTATTCC--AAAGACTTGAAGGAAAGCTGGAACCAATTCACCAGACCCATA----TTTCTTTAGTATTTTCTA-----GTGTTGTGGACTGATTGAT-TAAA---GTGGGTTTTTCCCCAGCTCAGAGACCTTCTCAGTCTTGT------TCAGAGACT-TCAACTGTATTGGATTAGAACAAG---GATTCTTCAGACTGTG---CATC-TTG--TCTGTTGTCCAG----------AGTAC------------AAAGATTTCAGCTCTCCTATGTCCCAAAGCCTCTATGCCAAGAAGGGAC-AGGCTTGT-CCTCTCAGTCTTTGCTC------------------------------------------------------------------CTACCCAAAGGCAGAGAGAGC------TTCCCC-TCCATAA----TTCACACAACCCTGGATAGGCAGGA--CAGAGTTGAA-GAC-TATGGATGTCTAGGTCTTGGCTCCC------AGCAACTCAGGACCTCC------ACTTCAGat-ttccttcctataacaattcccttaggaattattctacccattttag----tgacagaaacctggggtacagagtggtcaagggatttccctgaTAAACGCTGTGGTGC---------TGATAGTGCAGCCCAGAA-------TCCAAG----AGTCCCTGCAGCCTTCACATCAA-GATGGTACTTAGGCATGTGCAGAGTACACTTCCCTTTTGCCCTCAAATGCAGCGTATCTTCATGAGCC----TATTTCCAAGCTAGGCTGTCTTTATTAACCAACAACTCAGCCCCAGCCAATCCCCAA--GGGGGGAAAAA--CACTACCTTTCTT-GTCAGTGTACCT-CTGGACA-C-TGCAG-CCCA-------------CACAGCTG----------------------GCTGAACTCGGCAAATGGGAACCGAAGTCTTGTGAGCTTCACATGACCTGATCCTTTGTT-ATCAGAACAGGGTTCAGGTGGCCCTGTTGGCTCATGTGCTTT--------------------------GGAAGCCAGCTCCCTGGGTCACG-AGTCTGGCTTTGCACTTTCCATAAGAGTCTGCTTCTATGCAAAGGTGCAAACAGGAGACCTTCCCAAATCTGCTGGCTGAACAGGCTAAACTACGGTGAGAGGCTGCTTTGGAATGGCTCAGTCTCTCTTCTATGCATCTCCCAAGTCTGACAG-------GTTTGTTGCCCTGGGAAGCAGGACC-TCCCTGAGCTCCTTAACCT-----------------TGACC-----CCATTCTGCAAGACAGTCGTGTGCTCTGGGCTCGCCTCTGG-CCTCACAGCACTTGTGTAAGTGGGCTTGCTTAACAGCAATATCCTTGGAAGCTTCTGGACCCAAAGGGAAGCCAATCCTTCGAGTTTGCCATTGGG------CTGCTGGTTGCTGGTTTCAAACA-----------TATAGTTC-ATGAAAAGTCTTTAA-TTGGAGATTTTCAAAGGTGAATAGTCT-GTTTTTGTTGGAAACAAACTCATC---CAATGAGTCATCGGTGAGTTTGGCTTTCACCCCTGC-CACATCCTC---CCC------CAAGGTTCCTTCCATGCTGCACCACCTTCCTTTA----GCCAGTGACAGAGCCTGGTGCCCTTCCTGGACTGA-AACCG------------------CTGGAATC--CT-------------TCCGAGGGGAGTGGCATTCGGCTTGCCTCCTGCTTAGATCTGCTTTTATCCATTTGTAGCAACTTTATGCTATAACAAAA-GGTTGAATGAAACCAAGAGTTCTCTTGGCAAGTCAGACTGGCTTCCC-AAGACgccaatcacagaacacatgccaatcacagaacacatgcc-aatcacagaacacCTCGCAGGATCCCGCAGGC---------------------CACGGTGAAGGAGAATGCTTT------ATGT----TGATG--------TTGTCCATTC----TCT----ATTCTCTTTGC--------TTTTTTTTGACCTAAATAAGCTGCAAACATGTTAATTTACCA-A-TA------------TTGATAAACCACATGAAGAAATCAGGCATTTTACGTTATGATGTGCTTGTTCCTGTCTCTGCCTATAAATTGACTGTATTGATGATG--------------AAGGAAGGAGTTCTGGCTGACCATTCTGAAGCAGTCCCAGTCATGAA--AGGATGCCTTACCCAGTGGCCAGACAT--GATAGTTCCAGGTCTCCCCTTGGTTTTGGTGATAGAGAACC-----CGAGGAGGCAA-GGGG----------GATGTC----AACCCATTTCTATTTCATTACCCACAAGTGAAAGGACTAGAAAAAAA-----TATTTGAAATTAACATTTAGATGCACAGGTCTTAATTCCTTGTCTGAAACCTGTCCCCCTCACC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17122372 3302 - 229590362 CAGCTCCAGGCTGAGCCGTTG----------GGAGATGCTTCGCACTCTGTTTGCTCTGT-GTCTCCATCAAGCTCTTCCTCTCTTGCAGTTGACTTGGAGCAGGTTTGGGAGCTGGATTCCCTGGAGTACCTGGAGGCCCTGGAGTGTGTGACGGAGCGCCTGGAGAGCCGTGTCAACTTCTGCAAGGCCCATCTCATGATGATCACCTGCTTCGACATCACCTCCAGGCGCCGGTAGAGGA--GCCAGCCCCTTGTCCTAGCGGTTCCCC-GCTCCCCAGGACTTCAGAGACGGTGCACGCCCCTAGGCCCTCTGTGCCGG-GGCATCAAAGACAAT-GAATGAGGATGAAGGTTGGTGGCAAGTCTGGAGCGAGCGTTGAGC-GAAGGCGAGTTTTCTTTTGTTTTCTGTAGG----AAAGGCGCAAACGTCAAACAC----CCATGGAAGGAGAAAAGGATGGGAAGCCCGAGGGGTGTCC--GCCCTGCGAGACT-GAAAAAGCACTTTGAGGAACCTT----ACCTTGTTTGTACATAAGAACTGCTAGTGAACGAGACCTCACTCTTCTCTTACTTTCGTGAGAGAGGA-GCGGGGCGGATGTAGGATTGCTGTGGAAAGTGAACAC--AACA---ACAAA--AAGACCCAGAATGACTGATTAAGTGCCTTGCAAATCTTTATTATTATCCAAACATTTATGTTCATACTTTCTTGTGTACAGATGGTGCTAGTCAAGATGAAAACAACA-------AAAC-------AAAA------AC--------ATTTTGGAAATGTATTCACAGCTCGTTTTCTCTTGGTG-TTTTATCCTATTTCTGACTTGC----TGTTTCTAAGTAAGTTGTGTTTGTAGAGCTATTTCCTAATCAGTATTGCTTATGAATAAATGTTACCTGTCTTTTATGGTTATTCTGGTGAGGCCACTCA-AACAGAACA-AGAGGCTT-CCTCGGCACGAGCCAGTGTGTGTGTTTCCAAAGTAGGTTTGGAGCAGCAGGTGAC-CTCGATGCCATGTCCCAACAAGCAGCGTGGTCAG--GGCAGACCCAGAAGGTTGA--------TTGTGGGGCAGGT--------GCTTTAGAGAACGGGCGAGGAGCCGGGCGCTGCAGCATCGGGGAGGAGGAGTCCTTTGCGACCTGGGTCCTCCCTGCTCCTGGGAGGTGGGCTG--TGTGTTCTGTAGACAGTTTGCCCCCCTCAAGTCCTCACACACATA-TGGTTCCTTGACCCACAAATCCACAGTTTGCCTGGCCCTCAAAA-----------------TTCGTATTCATTTTTATTCC--AAAGACTTGAAGGAAAGCTGGAACCAGTTCACCAGAGCTGTA---------------TTTTCTA-----GTGTTGTG----AATTGAC-TAAA---GTAGGATTTACCCCAGCTGAGAGACCTCCTCAGGCTTGT------TCAGAGACT-TCACCTGTATTGGATTAGAACAAG---GGTTCTTGAGACGGTA---CATC-TTG--TCTGTTGTCCAG----------AGTCC------------AAGGATTTCAGCTCTCCTACGTCCCAAAGCCTCTACGCCAAGAAGGGAC-GGGCTTGT-CCTCTCAGTCTTTGCCCCTCTACCCAAAGGCAGAGCTTCCCTCCATAACTCCCACAACCCTGGATATCAATCAGTCTTTGCCCCTACCCAAAGGCAGA----GC------TTCCCC-TCCATAA----CTCCCACAACCCTGGAGAGGCAGAA--CATAGCTGAA-GA--GATGGATGTCCAGGTTTTGGCTCCC------AATAACTCAGGACTTCA------AATTTAGGTGTTCCTCCCTGTAACAATTCCCTTAGGAatta---cacccattttagtgattgatagaatccccaggtccagagtggtcaagggatttgcctgatcaaagctgtggtgc---------tgatagaacagcctggaa-------gccagg----agtccctgcagccttcacatcaaggacagtgctTAGGCATTTGCAGAGTACGCTTCCCTTTTGCCCTCAAATGCAGCATATCTTCATGAGCC----TGTTTCCAA-CTAGGCTGCCTTTATTAACCAACAACTCAGCCCCAGCCACTCCCCAAGGGGGGAAAAAAA--CGCTACATTTCTGGCTCAGTGTACCT-CTGGACG-C-TGCAG-CCCA-------------CACAGCTA----------------------GCTGAACTCGGTAAATGGGAACCAAAGTCTTGTGAGCTTCACATGATCTGCTCCTTTGTT-ATCAGAACAGGGTTCAGGTGGCCCTGTTGGC-------------------------------------GGAAGCCAGCT-CCTGGGTCACG-AGTCTGGCTTTGCACCTTTCCTAAGAGTCTGCTTCT--------GTACAAACAGGAGACATGCCCACATCTGCCAGCTGAACAGGCTCAACTGCAGGGAGAGGCTGCTCTGGCATGGCTCAGTCTCCCTTCTATGCATCTCCCAAGTCTGATAG-------GTTTGTTGCCCTAGGAAGCAGGACC-TCCCTAAGCTCCTGCGCCT-----------------TGACC-----CCATTCTGCAGGACAGTCGCATGCTCTGGGCTCACCTCTGGCCCTCACAGCACTTGTGTAAGTGAGTTTGCTTAACAGTAATATCTTTGGAAGCGTCTGGACCCAAAGGGAAGCCAATCCTTCGAGTTTTCCGTCGGGCAATCTCTTTTGGTGGCTGGTTTTAAACG-----------TGTAGTTC-ATGAAAAGTCTTTAA-TTGGAGATTTTCAAAGGTGAATATTCT-GTTTTTGTTGGAAACAAACTCATC---TGATGGGTCATCGGTGAGCTTGGTTTTCGCCGCTGC-CACGTCCTC---CCC------TGAGGTTCCTTCCATGCTGTGCCTCCTTCCTTTA----GCCAGTGACAGAGCCTGGTGCCCTTGCTGGACTGA-AACCG------------------ATGGACTC--CT-------------TCCAAGGCGTGTGGCACTCGGCTTGCCTCCTGCCTGAA------TTTATCCATTTGTAGCAACTTTATGCTATAACAGAA-GCTTGAATAAAACTCAGAGTTCTCTTACCAAGTCAGACTGGCTTCCC-AAG------------------------------------ATGCC-CATCACAGGACACCTCGCAGGATCCCGCAGGC---------------------CGCGGTGAAGGAGAATGTTTTATGTTGATGT----TGATG--------TTGTCTATTC----TCTCTCTCTTCTCTTTGC-TTTTTTTTTTTTTTTGACCTAAATAAGCTGCAAACATGTTAATTTACCA-A-TA------------TTGATAAACCAGGTGAAGAAATCGGGCATTTTACATTATGATGTGCTTGTTCCTGTCTCTGCCTATAAACGGACGATGTTGATGATG--------------AAGGAGGGAGTTCTGGCTGACCGTTCTGAAGCAGTCCGGGGCACGG-----------------AGTGACCAGACGTGAGATAGTTCCAGGTCGCCTCTCGGTTTTGGTGACACAGAACC-----CGAGGAGGCAC-GGGGAAAATGTCAAAATGTCAAAGAACCTATTTCTATTTCATTACCCACAAACGAAAGGACTAGAAAAAAA-----TATTTGAAATTCACATTTAGATGCATAGGTCTTAATTCCTTGTCTAAAACCTGTCCTCCTCACC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223886319 3299 - 227556264 CAGCTCCAGGCTGAGCCGTCG----------GGAGATGCTTCGCACTCTGTTTGCTCTGT-GTCTCCATCAAGCTCTTCCTCTCTTGCAGTTGACTTGGAGCAGGTTTGGGAGCTGGATTCCCTGGAGTACCTGGAGGCCCTGGAGTGTGTGACGGAGCGCCTGGAGAGCCGTGTCAACTTCTGCAAGGCCCATCTCATGATGATCACCTGCTTCGACATCACCTCCAGGCGCCGGTAGAGGA--GCCAGCCCCTTGTCCTAGCGGTTCCCC-GCTCCCCAGGACTTCAGAGACGGTGCACGCCCCTAGGCCCTCTGTGCCGG-GGCATCAAAGACAAT-GAATGAGGATGAAGGTTGGTGGCAAGTCTGGAGCGAGCGTTGAGC-GAAGGCGAGTTTTCTTTTGTTTTCTGTAGG----AAAGGCGCAAACGTCAAACAC----CCATGGAAGGAGAAAAGGATGGGAAGCCCGAGGGGTGTCC--GCCCTGCGAGACT-GAAAAAGCACTTTGAGGAACCTT----ACCTTGTTTGTACATAAGAACTGCTAGTGAACGAGACCTCACTCTTCTCTTACTTTCGTGAGAGAGGA-GCGGGGCGGATGTAGGATTGCTGTGGAAAGTGAACAC--AACA---ACAAA--AAGACCCAGAATGACTGATTAAGTGCCTTGCAAATCTTTATTATTATCCAAACATTTATGTTCATACTTTCTTGTGTACAGATGGTGCTAGTCAAGATGAAAACAACA-------AAAC-------AAAA------AC--------ATTTTGGAAATGTATTCACAGCTCGTTTTCTCTTGGTG-TTTTATCCTATTTCTGACTTGC----TGTTTCTAAGTAAGTTGTGTTTGTAGAGCTATTTCCTAATCAGTATTGCTTATGAATAAATGTTACCTGTCTTTTATGGTTATTCTGGTGAGGCCACTCA-AACAGAACA-AGAGGCTT-CCTCGGCACGAGCCAGTGTGTGTGTTTCCAAAGTAGGTGTGGAGCAGCAGGTGAC-CTCGATGCCATGTCCCAACAAGCAGCGTGGTCAG--GGCAGACCCAGAAGGTTGA--------TTGTGGGGCAGGT--------GCTTTAGAGAACGGGCAAGGAGCCAGACGCTGCAGCATCGGGGAGGAGGAGTCCTTTGCGACCTGGGTCCTCCCTGCTCCTGGGAGGTGGGCTG--TGTGTTCTGTAGACAGTTTGCCCCCCTCAAGTCCTCACACACATA-TGGTTCCTTGACCCACAAATCCACAGTTTGCCTGGCCCTCAAAA-----------------TTCGTATTCATTTTTATTCC--AAAGACTTGAAGGAAAGCTGGAACCAGTTCACCAGAGCTGTA---------------TTTTCTA-----GTGTTGTG----AATTGAC-TAAA---GTAGGATTTACCCCAGCTGAGAGACCTCCTCAGGCTTGT------TCAGAGACT-TCACCTGTATTGGATTAGAACAAG---GGTTCTTGAGACGGTA---CATC-TTG--TCTGTTGTCCAG----------AGTCC------------AAGGATTTCAGCTCTCCTACATCCCAAAGCCTCTACGCCAAGAAGGGAC-GGGCTTGT-CCTCTCAGTCTTTGCCCCTCTACCCAAAGGCAGAGCTTCCCTCCATAACTCCCACAACCCTGGAT----ATCAGTCTTTGCCCCTACCCAAAGGCAGA----GC------TTCCCC-TCCATAA----CTCCCACAACCCTGGAGAGGCAGAA--CATAGCTGAA-GA--GATGGATGTCCAGGTTTTGGCTCCC------AATAACTCAGGACTTCA------AATTTAGGTGTTCCTCCCTGTAACAATTCCCTTAGGAatta---cacccattttagtgattgatagaatccccaggtccagagtggtcaagggatttgcctgatcaaagctgtggtgc---------tgatagaacagcctggaa-------gccagg----agtccctgcagccttcacatcaagggcagtgctTAGGCATTTGCAGAGTACGCTTCCCTTTTGCCCTCAAATGCAGCACATCTTCATGAGCC----TGTTTCCAA-CTAGGCTGCCTTTATTAACCAACAACTCAGCCCCAGCCACTCCCCAAGGGGGGAAAAAAA--CGCTACATTTCTGGCTCAGTGTACCT-CTGGACG-C-TGCAG-CCCA-------------CACAGCTG----------------------GCTGAACTCGGTAAATGGGAACCAAAGTCTTGTGAGCTTCACATGATCTGCTCCTTTGTT-ATCAGAACAGGGTTCAGGTGGCCCTGTTGGC-------------------------------------GGAAGCCAGCT-CCTGGGTCACG-AGTCTGGCTTTGCACCTTTCCTAAGAGTCTGCTTCT--------GTACAAACAGGAGACATGCCCACATCTGCCAGCTGAACAGGCTCAACTGCAGGGAGAGGCTGCTCTGGCATGGCTCAGTCTCCCTTCTATGCATCTCCCAAGTCTGATAA-------GTTTGTTGCCCTAGGAAGCAGGACC-TCCCTAAGCTCCTGCGCCT-----------------TGACC-----CCATTCTGCAGGACAGTCGCGTGCTCTGGGCTCACCTCTGGCCCTCACAGCACTTGTGTAAGTGAGTTTGCTTAACAGTAATATCTTTGGAAGCGTCTGGACCCAAAGGGAAGCCAATCCTTCGAGTTTTCCGTCGGGCAATCTCTTTTGGTGGCTGGTTTTAAACG-----------TGTAGTTC-ATGAAAAGTCTTTAA-TTGGAGATTTTCAAAGGTGAATATTCT-GTTTTTGTTGGAAACAAACTCATC---TGATGGGTCATCGGTGAGCTTGGTTTTCGCCGCTGC-CACGTCCTC---CCC------TGAGGTTCCTTCCATGCTGTGCCTCCTTCCTTTA----GCCAGTGACAGAGCCTGGTGCCCTTGCTGGACTGA-AACCG------------------ATGGACTC--CT-------------TCCGAGGCGTGTGGCACTCGGCTTGCCTCCTGCCTGAA------TTTATCCATTTGTAGCAACTTTATGCTATAACAGAA-GCTTGAATAAAACCAAGAGTTCTCTTACCAAGTCAGACTGGCTTCCC-AAG------------------------------------ATGCC-CATCACAGGACACCTCGCAGGATCCTGCAGGC---------------------CGCGGTGAAGGAGAATGTTTTATGTTGATGT----TGATG--------TTGTCTATTC----TCTCTCTCTTCTCTTTGCTTTTTTTTTTTTTTTTGACCTAAATAAGCTGCAAACATGTTAATTTACCA-A-TA------------TTGATAAACCAGGTGAAGAAATCGGGCATTTTACATTATGATGTGCTTGTTCCTGTCTCTGCCTATAAACGGACGATGTTGATGATG--------------AAGGAGGGAGTTCTGGCTGACCGTTCTGAAGCAGTCCCGGGCACGG-----------------AGTGACCAGACGTGAGATAGTTCCAGGTCGCCTCTCGGTTTTGGTGACACAGAACC-----CGAGGAGGCAC-GGGGAAAATGTCAAAATGTCAAAGAACCTATTTCTATTTCATTACCCACAAACGAAAGGACTAGAAAAAAA-----TATTTGAAATTCACATTTAGATGCATAGGTCTTAATTCCTTGTCTAAAACCTGTCCTCCTCACC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16931763 3236 - 220367699 CAGCTCCAGGCTGAGCCGTCG----------GGAGACGCTTCGCGCCCTGTTTGCTCTGT-GTCTCCATCAAGCTCTTCCTCTCTTGCAGTTGACTTGGAGCAGGTTTGGGAGCTGGATTCCCTGGAGTACCTGGAGGCCCTGGAGTGTGTGACGGAGCGCCTGGAGAGCCGTGTCAACTTCTGCAAGGCCCATCTCATGATGATCACCTGCTTCGACATCACCTCCAGGCGCCGGTAGAGGA--GCCAGCCCCTTGTCCTAGCGGTTCCCC-GCTCTCCAGGACTTCAGAGACGGTGCACGCCCCTAGGCCCTCTGTGCCGG-GGCATCAAAGACAAT-GAATGAGGATGAAGGTTGGTGGCAAGTCTGGAGCGAGCGTTGAGCGGAAGGcgagtt---ttttgttttctgtagg----aAAGGCGCAAACGCCAAACAC----CCGTGGAAGGAGAAAAGGATGGGAAGCCCGAGGGGCGTCA--GCCCTGCGAGACT-GAAAGAGCACTTTGAGGAACCTT----ACCTTGTTTGTACATAAGAACTGCTAGCGAAAGAGACCTCACTCTTCTCTTGCTTTCGTGAGAGAGGA-GCGGGGTGGATGTAGGATTGCTGTGGAAAGcgaacac--aaca---acaaa--aagacccaGAATGACTGATTAAGTGCCTTGCAAACCTTTATTATTATCCAAACATTTATGTTCATACTTTCTTGTGTACAGATGGTGCTAGTCaagatgaaaacaaca-------aaac-------aaaa------ac--------attttggaaatgtaTTCACAGCTCGTTTTCTCTTGGTG-TTTTATCCTATTTCTGACTTGC----TGTTTCTAAGTAAGTTGTGTTTGTAGAGCTATTTCCTAATCAGTATTGCTTATGAATAAATGTTACCTGTTTTTTATGGTTATTCTGGTGAGGCCACTCC-AACAGAACAGAGAGGCTT-CCTCGGCACGAGCCAGTGTGTGTGTTTCCAAAGTACGTTTGGAGCAGCAGGTGAC-CTCGATGCCACATCCCAACAAGCAGCGTGGTCGG--GGCAGACCCAGAAGGTTGA--------TTGTGGGGCAGGT--------GCTTTAGAGAACGGGCGAGGAGCCGGACGCTGCAGCATGGGGGAGGAGGAGTCCTTTGCGACCTGGGTCCTCCCTGCTCCTGGGAGGTGGGCTG--TGTGTTCTGTAGACAGTTTGCCCCCTTCAAGTCCTCACACACGTA-TGGTTCCTTGACCCACAAATCCACAGTTTGCCTGGCCCTCaaaa-----------------ttcatattcatttttattcc--aaaGACTTGAAGGAAAGCTGGAACCAATTCACCAGAGCTGTA---------------TTTTCTA-----GTGTTGTG----AATTGAC-TGAA---CTAGGATTTTCCCCAGCTGAGAGACCTCCTCAGGCTTGT------TCAGAGACT-TCACCTGTATTGGATTAGAACAAG---GGTTCTTGAGACGGTA---CATC-TTG--TCTGTTGTCCAG----------AGTCC------------AAGGATTTCAGCTCTCCTACGTCCCAAAGCCTCTATGCCAAGAAGGGAC-GGGCTTGT-CCTCTCAGTCTTTGCCCCT----------------------------------------------------------------CTACCCAAAGGCAGA----GC------TTCCTC-TCCATAA----CTCCCACAACCCTGGAGAGGCAGAA--CATAGCTGAA-GA--GATGGATGTCCAGGTCTTGGCTCCC------AACAACTCAGGACTTCA------AATTTAGGTGTTCCTCCCTGTAACAATTCCCTTAGGAATTA---CACCCATTTTAGTGATTGATAGAATCCCCAGGTCCAGAGTGGTCAAGGGATTTGCCTGATCAAAGCTGTGGTGC---------TGATAGAACAGCCCGGAA-------GCCAGG----AGTCCCTGCAGCCTTCACATCAAGGACAGTACTTAGGCATTTGCAGAGTACGCTTCCCTTTTGCCCTCAAATGCAGCATATCTTCATGAGCC----TGTTTCCAA-CTAGGCTGCCTTTATTAACCAACAACTCAGCCCCAGCCACTCcccaaggggggaaaaaaa--cactacATTGCTGGCTCAGTGTACCT-CTGGACG-C-TGCAG-CCCA-------------CACAGCTG----------------------GCTGAACTCGGTAAATGGGAACCAAAGTCTTGTGAGCTTCACATGATCTGCTCCTTTGTT-ATCAGAACAGGGTTCAGGTGGCCCTGTTGGC-------------------------------------GGAAGCCAACTCCCTGGGTCACG-AGTCTGGCTTTGCACTTTTCCTAAGAATCTGCTTCT--------GTACAAACAGGAGACATGCCCACATCTGCCAGCTGAACAGGCTCAACTGCAGGGAGAGGCTGCTCTGGCATGGCTCAGTCTCCCTTCTATGCATCTCCCAAGTCTGATAA-------GTTTGTTGCCCCGGCAAGCAGGACC-TCCCTAAGCTCCTGCGCCT-----------------TGACC-----CCATTCTGCAGGACAGTCGCGTGCTCTGGGCTCACCTCTGG-CCTCACAGCACTTGTGTGAGTGAGTTTGCTTAACAGTAATATCCTTGGAAGCGTCTGGACCCAAAGGGAAGCCAATCCTTCGAGTTTTCCGTCGGGCAATCTCTTTTGGTGGCTGGTTTTAAACG-----------TGTAGTTC-ATGAAAAGTCTTTAA-TTGGAGATTTTCAAAGGtgaatattct-gtttttgttggaAACAAACTCATC---TGATGGGTCATCGGTGAGCTTGGTTTTCGCCGCTGC-CACATCCTC---CCC------TGAGGTTCCTTCCATGCTGTGCCTCCTTCCTTTA----GCCAGTGACAGAGCCTGGTGCCCTTGCTGGACTGA-AACCG------------------ATGGACTC--CT-------------TCTGAGGCGTGTGGCACTCGGCTTGCCTCCTGCCTGAA------TTTATCCATTTGTAGCAACTTTATGCTATAACAGAA-GCTTGAATAAAACCAAGAGTTCTCTTACCAAGTCAGACTGGCTTCCC-AAG------------------------------------ATGCC-CATCACAGGACACCTCGCAGGATCCCACAGGC---------------------CACAGTGAAGGAGAATGCtttatgttgatgt----tgatg--------ttgtctattc----tctctctcttctctttgc--ttttttttttttttgacctaaATAAGCTGCAAACATGTTAATTTACCA-A-TA------------TTGATAAACCAGGTGAAGAAATCGGGCATTTTACATTATGATGTGCTTGTTCCTGTCTCTGCCTATAAAcggatgatgttgatgatg--------------aagGAGGGAGTTCTGGCTGACCATTCTGAAGCAGTCCCGGGCACGG-----------------AGTGACCAGACGTGAGATAGTTCCAGGTCGCCTCTCGGTTTTGGTGATAGAGAACC-----CGAGGAGGCAT-GGGGAAAATGTCAAAATGTCAAAGAACCTATTTCTATTTCATTACCCACAAACGAaaggactagaaaaaaa-----tatttgaaattcacaTTTAGATGCATAGGTCTTAATTCCTTGTCTAAAACCTGTCCTCCTCACC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82734182 3236 + 85787240 CAGCTCCAGGCTGAGCCGTCG----------GGAGATGCTTCGCGCCCTGTTTGCTCTGT-GTCTCCATCAAGCTCTTCCTCTCTTGCAGTTGACTTGGAGCAGGTTTGGGAGCTGGATTCCCTGGAGTACCTGGAGGCCCTGGAGTGTGTGACGGAGCGCCTGGAGAGCCGTGTCAACTTCTGCAAGGCCCATCTCATGATGATCACCTGCTTCGACATCACCTCCAGGCGCCGGTAGATGA--GCCAGACCCTTGTCCTAGCGGTTCCCC-GCTCCCCAGGACTTCAGAGACGGTGCACGCCCCTAGGCCCTCTGTGCGGG-GGCATCAAAGACAAT-GAATGAGGATGAAGGTTGGTGGCAAGTCTGGAGCGAGCGTTGAGCGGAAGGCGAGTTTTCTTTTGTTTTCTGTAGG----AAAGGCGCAAACGCCAAACAC----CCATGGAAGGAGAAAAGGATGGGAAGCCCGAGGGGTGTCCAAGCCCTGCGAGACT-GAAAAAGCACTTTGAGGAACCTT----ACCTTGTTTGTACATAAGAACTGCTAGCAAAAGAGACCTCACTCTTCTCTTGCTTTCGTGAGAGAGGA-GCGGGGTGGATGTAGGATTGCTGTGGAAAGCGAACAC--AACA---ACAAA--AAGACCCAGAATGACTGATTAAGTGCCTTGCAAATCTTTATTATTATCCAAACATTTATGTTCATACTTTCTTGTGTACAGATGGTGCTAGTCAAGATGAAAACAACA-------AAAC-------AAAA------AC--------ATTTTGGAAATGTATTCACAGCTCGTTTTCTCTTGGTG-TTTTATCCTATTTCTGACTTGC----TGTTTCTAAGTAAGTTGTGTTTGTAGAGCTATTTCCTAATCAGTATTGCTTATGAATAAATGTTACCTGTCTTTTATGGTTATTCTGGTGAGGCCACTCA-AACAGAACAGAGAGACTT-CCCCGGCACGAGCCAGTGTGTGTGTTTCCAAAGTAGGTTTGGAGCAGCAGGTGAC-CTCGATGCCATGTCCCAACAAGCAGCGTGGTCAG--GGCAGACCCAGAAGGTTGA--------TAGTGGGGCAGGT--------GCTTTAGAGAACGGGCGAGGAGCCGGACCCTGCAGCATGGGGGAGGAGGAGTCCTTTGCGA-----------------CCTGGGAGGTGGGCTG--TGTGTTCTGTAGACAGTTTGCCCCCCTCAAGTCCTCACACACACA-TGGTTCCTTGACCCACAAATCCACAGGTTGCCTGGCCCTCAAAA-----------------TTCGTATTCATTTTTATTCC--AAAGACTTGAAGGAAAGCTGGAACCAATTCACCAGAGCTGTA---------------TTTTCTA-----GTGTTGTG----AATTGAC-TAAA---GTGGGATTTTTCCCAGCTGAGAGACCACCTCAGGCTTGT------TCAGAGACT-TCACCTGTATTGGATTAGAACAAG---GGTTCTTGAGACGGTA---CATC-TTG--TCTGTTGTCCAG----------AGTCC------------AAGGATTTCAGCTCTCCTGTGTCCCAAAGCCTCTAAGGCAAGAAGGGAC-AGGCTTGT-CCTCTCAGTCTTTGCCC------------------------------------------------------------------CTACCCAAAGGCAGAGAGCGC------TTCCCC-TCCATAA----CTCACACAACCCCGGATAGGCAGA----ATAGCTGAA-GA--GATGGATGTCCAGGTTTTGGCTCCC------AACAACTCAGGACTTCA------AATTTAGGTGTTCCTCCCTGTAACAATTCCCTTAGGAatta---cacccattttagtgattgatagactccccaggtccagagtggtcaagggatttgcctgatcaaagctgtggtgc---------tgatagaacagcccggaa-------gccagg----agtccctgcagccttcacatcaaggacagtgctTAGGCATTTGCAGAGTACGCTTCCCTTTTGCCCTCAAATGCAGCATATCTTCATGAGCC----TGTTTCCAAGCTAGGCTGCCTTTATTAACCAATAACTCAGCCCCCGCCACTCCCCAA-GGGGGAAAAGAA--CACTACATTTCTGGCTCAGTGTACCT-CTGGACG-C-TGCAG-CCCA-------------CACAGCTG----------------------GCTGAACTCGGTAAATGGGAACCAAAGTCTTGTGAGCTTCACATGATCTGCTCCTTTGTT-ATCAGAACAGGGTTCAGGTGGCCCTGTCGGC-------------------------------------GGAAGCCAGCTCCCTGGGTCACG-AGTCTGGCTTTGCACTTTTCCTAAGAGTCTGCTTCT--------GTACAAACAGGAGACATGCCCACATCTGCTAGCTGAACAGGCTCAACTGCAGGGAGAGGCTGCTCTGTCATGGCTCAGTCTCCCTTCTATGCATCTCCCAAGTCTGATAA-------GTTTGTTGCCCTGGGAAGCAGGACC-TCCCTAAGCTCCTTCGCCT-----------------TGACC-----TCATTCTGCAGGACAGTCGCGCGCACTGGGCTCACCTCTGC-CCTCACAGCACTTGTGTGAGTGAGTTTGCTTAACAGTAATATCCTTGGAAGCGTCTGGACCCAAAGGGAAGCCAATCCTTCGAGTTTTCCGTCGGGCAATCTCTTTTGGTGGCTGGTTTTAAACG-----------TGTAGTTC-ATGAAAAGTCTTTAA-TTGGAGATTTTCA------AATATTCT-GTTTTTGCTGGAAACAAACTCATC---TGATGGGTCATCGGTGAGCTTGGTTTTCGCCCCTGC-CACGTCCTC---CCC------TGAGGTTCCTTCCATGCTGTGCCTCCTTCCTTTA----GCCAGGGACAGAGCCTGGTGCCCTTACTGGACTGA-AACCG------------------ATGGACTC--CT-------------TCCGAGGGGGGTGGCACTTGGCTTGCCTCCTGCCTGAATCTGCTTTTATCCATTTGTAGCAACTTTATGCTATAACAAAA-GCTTGAATAAAACCAAGAGTTCTCTTACCAAGTCAGACTGGCTTCCC-AAG------------------------------------ATGCC-CATCACAGAACACCTCACGGGATCCCGCAGGCCACAGTGAAGATCCCGCAGGACACGGTGAAGGAGAATGCTTT------CTGT----TGATG--------TTGTCCAT------TCTCTCTCTTCTTTTTGC---TATTTTTTTTTTTGACCTAAATAAGCTGCAAACATGTTAATTTACCA-A-TA------------TTGATAAACCATGTGAAGAAATCGGGCATTTTACATTATGATGTGCTTGTTCCTGTCTCTGCCTACAAACTGACGACATTGATGATG--------------AAGGAGGGAGCTCTGGCTGACCATTCTGAAGCAGTCCCGGGCACGG-----------------AGTGACCAGACGTGAGATAGTTCCAGGTCTCCTCTCGGTTTTGGTGATAGAGAACC-----CAAGGAGGCAC-GGGGAAAATGTCAAAATGTCAAAGAACCTATTTCTATTTCATTACCCACAAATGAAAGGACTAGAAAAAAA-----TATTTGAAATTCACATTTAGATGCATAAGTTTTAATTCCTTGTCTAAAACCTGTCCTCCTCACC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14452091 3140 - 49578535 CAGCTGCGGGCCGAGCAGTCG----------GGAGGTGCTTCTCGCCCCATCTGCTCTGC--TCTCCATCAGGCTCTTTCTCTTCTTCAGTTGACCTGGAGCAGGTTTGGGAGCTGGATTCCCTGGAGTACCTGGAGGCACTGGAGTGTGTGACAGAACGCCTGGAGAGCCGCGTCAACTTCTGCAAGGCCCACCTCATGATGATCACCTGCTTCGACGTCACCTCCAGGCGCCGGTAGA-GA--GCCAGACGCTTGTCCTAGCGGTCCCCCTGCTCCCCAGGACTTCAGAGATGTCGCACGCCCCTCGGCCCTCTGTGCCGG-AGCATCAGAGACAGT-GAATGAGGATGAAGGTTGGTGGCAAGTCTGGAGTGAGAGTTGAGCGGAAGGCGAGTTTTCTTTTGTTTTCTGTAGG----AAGGGTGCAAACGCCAAACCC----CCATGGAAGGAGAAGATGATCGGAAGCCCGAGGGATGTCCACACCCTGTGAGACTGGAAAAAGCACTTTGAGGACCTTTACAGACCTTGTTTGTACATAAGAACTGCGAGCGGAAGAGACCTCACTCTTCTCTTGCTTTCGTGAGAAAGGA-GTGGGGCGGGCGTAGGATTGCTGTGGAACGGGAACACAGAACA---AGAAAGCAAGCCCCAGAGGGACTGATGAAGTGCCTTGCAAATCCT---TATTATCCAAACCTTTATGTTCACACCTTCTCACGTACAGATGGTGCTAGTCAGGATGAAAACCACG-------AAAC---------------------------ATTTTTGAAACGTATTTACAGCTCGTTTTCTCTTGGTG-TTTTCTCCTATTTCTGACTTGC----TGTTTCTAAGTAAGTTGTGTTTGTAGAGATATTTCCTAATCAGTATTGCTTCTGAATAAATGTTAACTGTCTTCTACGGTTATTCTGGTAAGGCCACTCA-GAACA-----TGGGACTT-CCTCAGCACGAGCCAGTGTGTGCGCTTGTGAAGCAGGTTCGCAGCAGCAGGTGCC-ATTGATGCCACATCCC-ACGAGCAGCATGGTCAG--GGCAGACCCGGAAGGTTGA---------CGTGGGGCAGGT--------GCTGTAGAGAATAGGAGAGGAGACGGGC-CTGCAGCTCTGTGGAAGAGGAGTCCTTTGCCACCTGGGTCCTCCCT-CTCCTTGGAGGTGGGCTGTCTGTGTTCTGTCTAGAG-CTGCCCCACTTTGGTCCTCACACACATG-TGGTTCC-------ATAGATCCACAGTTTTCATGGCCCTCAAAA-----------------TTCGTACTCATTTTTATTCC--AAAGACTTGAATGAAAGCTTGAACCAATTCACCAGAGCCATA----TTTCTTTCTTATTTTCTG-----GTGTTGTG----AATTTAT-TAAA---GTGGGTTTT--CCCAGCTGAGAGACCTTGTCAAGTGTGTACATACTCAGAGACT-CCAACTGTATTCCATCAGAACAAG---GATTCTTGAGACTGTA---CAAC-TTG--TCTGTTGTCCAG----------AGTAC------------CTGAATTTCAGC-CTCCTGTGTCCCAAAGCCTCTATACCAAGAAGCGAC-AGGCGTGT-CCTCTCAGCCTTTGCCT------------------------------------------------------------------CAACCCAAAGGCGGAGAGAGCGTGCTTTTCCCC-TCCATAACTCTCTCTCACAACCCTGGAAAGGCAAA-------GTCGAATGAC-TATGGATGTCCAGGTCTTGGCTCCC------A-CGACTCAAGACCTCA------AATTCAGATGTTCCTCCCTCTAACAATTCCCTtaggaattatcatccccattttag----tgatgaaaacctggggtacagagtggtcaaggggtttgcctgaTAAAAGCTGTGGTGC---------TGAGAGTGTAGCCCAGAA-------TCCAAG----AGTCCCTGCAGCCTTCACATGTAGGACGGTGCTTAGGGGGTTGCAGAATATGGTCCCCTTTCGCCCTCAAATGCGGCATATCTTCATGAGCC----TATTTGCAAGCTAGGCTGTCTTCACTAATCAACAACTCAGCCCTAGCCACTCCCCA---GGGGAAAAGAACCCACTGCATTTCCTGGTCAGTGTGTCT-CTGGACA-C-TGCAG-CCCA-------------C------------------------------------------------------AGGCTCCTGTGCTT------------------------------------------------------------------------------------------TGAAGCCAGCTCCATGGGTCATG-AGTCTGGCTTTGCAC-TTCCCTAAGAGTCTGCTCCT--------ATGCGAACAGCAGACAGGCCCAGATCTGCTAGTGGAACAGGCTGAATGATGGTGAGAGGCTGCCCTGGAAGGGCTCCTTCTCCCCTCTGTGCAGCTCCCAAGTCTGACAG-------GTTTATTGCCCTGGGAAGCAGGACC-TCCCTTAGCTCCTGGACCTCCCTTAGCTCCTACACCTCCCC-----TCGTTCTGCAGGACAGTCCCGTGCTCTGGGCTGGCCTCCGG-CCTCACAGCAC-TGTGGAAGTGGCCTTCCTTAACAGAAACACCCTCGGA-GCTTCTGGGCCAGAAGGGAAGCCGATCCTTTGAGGTTTCCATTGGG---TATCTCCTGTTTGCTGGTTTCAAACA-----------TTTACTTC-ATGAAAAGCCTTTAA-TTGGAGCTTTTCAAAGGTGCATATTCT-GTTTTTGTTGGAAACAAACTCATC---TGATTAGTCATCAGGGAGCTTGGCATTCGCC-CTGC-CACATTTTC---CCC------TGAGG---CTGCCATGCTGTACTGACTCTCGCAT----ACCGAGGACAGGGCCTGGTGTCCTTCCTGGACGGA-AACCA------------------GAGGAATC--CT-------------TCCTGGGGGAGTGGCGTTCGGCTTGCCTCCTGCCTG--TCTGCTTTTATCCATTTGTAGCAACTTTATGCTATAACAAAA-GGTTGAATGAAACCAAGAGTTCTCTTACCAAGTCAGACTGGCTTCCC-AAG------------------------------------ACG-C-AGCCACAGAACCCCTCGCAGGACCCCGCAGGC-----------------------ATGTGAAGGAGAACACTCT------ACAC----TGAT---------------ATCC----TTTCTCTCTCCTCTCTCC-------CTTTTTTTTGACCTAAATAAGCTGCAGACATCTTAATTTAGCA-A-TC------------CTGAGAAACCACGTGAAGAAATCATGCATTTTACATTATGATGCGCTTGTTCCCGTCTCTGCCCATACACTGACTACAGGGATGATG--------------A---------------CTGGCCACTCTGAAGCA-CCCCAACAGCTGA--AGGATGCCTCTTACAGTGGCCAGAGGTGAGAGTGTTCCAGGTCTCCTGTCGGTTTTGGTGACAGGTAACC-----C-AGAAGGCAA-GGGA----------AATGTCTAAGAGCCCATTTCTA---AATTACCCACAAATGAAGGGACTAGAAAAAAAACGTGGATTTAAAATTAACATTTAGATGCATAGGTCTTAATTCCTTGTCTAAAACCTGTCCTCCTGA-- i calJac3.chr19 C 0 C 0 s mm10.chr1 178932026 3059 + 195471971 CAGAC---------------------------------CTTCTTACA--GTTAGCTCTCCCATCTCTAAGAGCTCCTT--TCTCTTTCAGTTGACTTGGAGCAGGTCCTGCAGCTGGATTCCCTGGAGTACCTGGAGGCACTGGAGGGTGTGACAGAGCGCTTGGAGAGCCGCGTCAACTTCTGCAAGGCCCATCTCATGATGATCACCTGCTTTGACATCACCTCCAGGCGCCGATA-AGGACTGATGGGCTCTGAGCCATCAGGCCCTCT-CTCCCCCAGGACTTCAGCAGGACACCGCCCTCCCAAGCCCTCTGTGCTGGCAACACCCAAGACAACAGGATGAGGATGAAGGTTGGTAGCAAGTCTGGAGTGAGCGTGGAGCGAAAGGCGATGTTTCCTTTGTTTGCCATAGGAAAGAAAGGTACAGACACCAAC-------ATGTGGAAGGAGGAAATGATGGGAA-----------------GCCCCGTGGGACT-GAGAAAGCACTTTGAGGAACCTTGAAGAAC---TCTGTACAT-AGGACCGCTAGC-AAAGAG-----ACTCTTACCTTGCGGCTGTGGGAAAGGG-GAGGG--TGACATGGGATTACCATGGAGAACGAA-AC--ACCA---ACAAG--ATGACCCAGAATGATGGATTAAGTGCCTTGCAAATCTTTATGATTATCCAAACA-TTGTGTCCGTACTTTCTTGTGTCCAGATGGTGCTAGTCAAGAAGAAATCAACA-------AAACA------GAAA------ACTCAACCCAGTTTTTGAAATGTATTGACGGCTTGTTTTCTCTTGGTATTTTTCTCTTGTTTCTGATTTGCTGTTTGTTTCTAAG-AAGTTGTGTTTGTAGTGATGTCTCCTAATCGGTATTGCAGCTGAATAAATGTTAACTGTCTTTCATGGCTCTTCTGGTAAGGCCACTCA-GACCGT----GGAAACCG-CGTTGGCATGAGCCGGTGTGT----TTCCCAGGGAGGTTTGGAAGGACAGGTGATGGGAGAGACTATCTTCCAA--AGCGGCA-GGTCAGCTGGCAGACCCAG--GGTTGG--------GCATGGAATAGGTACACATGAGCTTTAGTGACAAGGAGAGA----------TGTCTTTAAGGGGAAGAGA----------GATGTGAGC---CCCTGTCCCTG--------------TTTGTTTCATGGGC---TTGTGGCTCTCAA-------CAC-----------------------------------------------AAG-----------------CTCATGTTCCTTTCTAGCCC--AAAGACTGGCTGGAAAGCTTGGGCAACCGCAGCCGAGTCCCA----TTTCT------TTGTTTA-----CTGTGGCA---TCACTGATGCAAA---GTGGGGCTGTCTACATTTCGA----CTCTCTGGGCTCAC------ACGGG------------------------------------CTTGGGGTTG-----CATCGTTT--TCTGCCATCCAGTGTCCTGTCCAGTAG------------CAAGAGGCCAACTCTCCCCTGTCCTAAAGCCTCCAT---------------GGCTTGT-CCCTGCCACCTTA----------------------------------------------------------------------GTATCCTAAGAAAGAGAGAGA------AACCCCATCCCTAA----ATTCCA-GACCCCACATACATAGGG--CAGAG-TGGA-GA----------TCTAGATCTTGCCCCCCCCCCCAAAAACCTGAGGACTTTA------TTCTCAAATTATCCTCC----------TCCTTTCAGGGCTATT-GGACCATGTTAGGGA--GATAGGA--CTGAAGCATGGAATGGTCA--GGCATTGTCTA--CAGGCCTCTGGAACAACTGAGCATTGCAGGAGGGCCAAGAATTCTCTCTCCCAG----AGCCTCTGCAGCCTGCCTGTGCAAACACAAGCTCAGGGGTTTGGAAAGAGGACTC----TGAATCCTCA----------ACCTTTGTGTGGC---------ACAT-CTGGGCCAGCCCCACTAACCAACTCCTTGACCCCAGATGCTCTCTAA---AGAGAAAGAA--CTCTGTGTTTCTGGACCAGCCCTTTTGCTGGACGCC-TGCAT-CCCAGCACAGCACGATGCATGGCCA----------------------GCAGAACTCATCACACAGG------AGTCATGTGAGTGCTGTGGCACCTGATCCTTGAT---ACAGAGCAGGGCACAGATGAGGCCATCGGCTTGACTGTTTT------AGAAGTCAGCCTTGTAGACCAAAAGCTAGCCCCATGGGTCACTCAGTCCTGCTTTGCACATTCC-TAAGAGTTGACTCTT--------CTGCAAAAGG-------GTCCCAAGGTGCTGATTGAATGGCCTGA----------------GCTCTGGAATGGCCCCTTTCCCCTTCTGTGTATCTTGTAGCTTTAACAA-------GTGTGTCTCCTAGAGAAGCAGAGCCTTCTCAGATCTTCTCCAGCT-----------------CCTCCCAGTGCCATTCGGCAGG--AGTCCTGGGCTCAGGGCCCACCTCAG--CCTCATAACACATGTGTGCATGGACCTGCTTAACAGCAATGTTCTTGGAAGCTTCTACACCCATAGGGGTGCCAATACTTTGAAC-------------ATCTGTTTTGATTGCTGGTTTGAAATATACTTCTGTTTTGTTTCTT-ATGAAGGGCCTTGAT-TTGGGAA---------------------GTTTTGCTCAAAAGCAAATTCATT---TGATTAGTAATCCATGAGCTTGGCTTTGGTCCCTGC-TGCCTTTTC---CCTTAGCCGTGAGGTCA---TCAGGCCCCAGTGAATACTTTAA-CGGGCCACCAACAAAGCCCAGTGCCTTTGCTGGAGTGA-GACTGGGCTGACATCTGTAGAAAGCAGACTC--TTAGTCAGCAGGTTCTCCTGGGAGAGCAGCCCTCGG-TTGCCTCCCACTCGGATTTGCTTGCATACCTTCCAAGCATCTTTATGCTTCAGC--TA-GGCCATATTA---CCAGGGTTACTTGACCAGGCGAGGTTAGCTTCCC-AGG-----------------------------GGGTCACATCCA-CATGACAGGGCATCCCACTGGACTCCACCGGT------------------------GGTGCAGGGAGATGTTT-------GTGTGAAATAATGCACATCTCTTGTCCATTCTAA-TATCCTGCCCCCCCCCAC-----------------ACACAAGTAAGCTGTAAGCATCTTATTCTACCACA-TAGCTCTATCTTAGCTGATAAGCC--TTGGAGAACTCCGGCATC-----CCATGATGCAACTGTTCCCTGCCCTATCTCTGAGATGCCTATG--------G--------------GAGTACAACTCTCTAGGTGCCAA----GACGTAGTCCTGGTGTCTGATGATGGTGCC------AGTG--------TGAGGTGGCTCCGGGT------TTGGCTTGAGGAACACGCAAACAAATACCAAGGGGCAA-AGGG----------ACCGCCAAAGAACTCACTTATAATTCATTATCCATCCGTAGATGGCCCCAAAGTGTT-----TCCTTGaaattaatatttaggttcct--------atgccttacttgaattctgtccttcccccc i mm10.chr1 C 0 I 421 s canFam3.chr7 36522417 3276 + 80974532 CAGCATCAGGGGGGGCCGGCAGGGCGGTGACGGGGAGGCTACCC-CCTTGTGCCTTCAGC-GTCTCCACCA-GCTTCCCCTCCTTTGCAGTTGACCTGGAGCAGGTTTGGGAACTGGATTCCCTGGAGTACCTGGAGGCGCTCGAGTGCGTGACGGAGCGTCTGGAGAGCCGCGTCAACTTCTGCAAGGCCCACCTCATGATGATCACCTGCTTCGACATCACCTCCCGGCGCCGATGAAggccggccgggccc-------gccagcgcctc-gccgcccgggACCTCGGAGAC------------------------------AGCG------------GCAGGAGGATGAAGGTTGGT-GCACGTCCGGAGTTAGCGCTGAGCGGAAGGC-AGTTTTCTTTTGTTTTCTGTAGG----AGAGGAGCGGACACCAGAC------ATGTGGGAGGAGGAAGTGATGGGAAGCCCAAGGGACATGGAAGCCCCGCGAGACT-GAAGAAGCACTTTGAGGAACTTTCGAGAACTTGTTTATACATCAGGACTGCTGGC--AAGAGACCTCTCTCTTCTCTGGC-TTCGTGAGAAGGGG-TGAGGGCGCGTGCAGGATGGCTGTCGGGAGCTAAAACCACTCA---ACAGG---TCACCTAGAGCGACTGATTAAGTGCCTTGCAAATCTT---TATTATCCAAACGTTTATGTTCAGACTTTCTCGTGTACAGATGGTGCTAGTCCAGATGAAAACACCA-------CCACACACGCGGAAATCAAGCGC--------GTTTTTGAAATGTATTTCCAGCTCGTTTTCTCTTGGTG-TTTTATCCTGTTTCTGACTTGC----TGTTTCTAAGTA----GTATTTGTAGATCTATTCCCTACTCGGTATTGCATATGAATAAATGTTCAGTGTCCTTTACAGTTCTTCTGGTAAGGCCACTCAGAACAC-----AGAGACTT-CGTGGGCCCGAGCTGCTGTGT----CTCCAGAG-ACGGCAGGCACAGCAGGTGAC-AT-GGGGCCACCTCTCCCCAGGGGCCCCGGGCAGCAGGCAGACTCGG---------------------GGGCAGGT--------GCAT--GTGAGCTCCAGAGACACAGGGGGCTGCATCTCTAAGGGAAAAGGAACCTTTATGAGCAAGGCCTCCTGTGTCCTTTG--AGAGGGGTG--TTTGCTCCAGACACAGCTT-CTCCCTCCGAGTCCTGGCGCACATACTGGTTCCCTTACCCCCAAACCCAGGGTTTTCACAGCCGTCAAAAACATCTTTTTTTTTTTTTTTTTTATCGTTTTTATCCC--AAAGACCGGATTGAAAGCTTGAACCAACCTGATAGAGCCATA----TTTTTTG----TTCTCTA-----GTTCTGCG----AAGGTAT-TAGAAGCAGGGAGCCTCTCCCAGGTTAGAGACCTTCTCAGGCTGGTATATGCTCAGAGACTGGCAACAGCATTGGCTTAGAACAAGAAAGAATGTTGGGAAT-CA---CATA-ATGGCCCTGTGGACCGG----------AGTGCTGCTCAAATGCAAAACGTCCCCATTCCCCCATGTCCCAAGGCCTCCATCCCAAGAAAGGACAAGGCTTTTCCCCCTCAGTCTTG----------------------------------------------------------------------GCACCAGAAAGTAGAGA--GG------TTTCCT-GTCGTGA----ACTGCACACCCCTTGAGAGGCAGAGCCCAGAGCTTCA-TGCGTAGGCCTGTCTGGGCCCTCGCTCCC------AGAACCATAGGACTTCATCCTCCGATCCAGCTGTTCATTCCTGCCTCCAGCCCCTTAGGGATCATCATACCCGTTTTAG----AGATGGAACCTCAAGGTACCAAGTGGTCAGAGGA-TTATCTGATAACAGCTGTGGAAT---------AGCAGGGGCTGCCTCCTA-----CCTCTCGGGTCAGGGCCCTGTGGCCTGCCCACTGGTGAGGGTACTCGGGGTGTCACAGCGTACTATCAGGTTTTGCCCTCCAATGCAGCATACCATTGTGAACC----TGTTTCTAGGTTTGACAGTCCCTGCTATCCTGCACCTTGACCC-AGCTGCTCCCCAA---GGAAACAGAT--CCGTGTGAACCTTTGCCAGTGCTCCT-CTGGACA-CACGAAGCCCCG-------------CACAGCTGGCTAGGCAGCCAGTGAAGCTCAGCTGAACTCAGAGCAGAGGGACTGGGGTCTCACGAGCTTCACAGGACGTGGTCCTTTACTGGTCAGAACAGGCCCCAG--TGCCCCGAAGGCTCGAGTGTCTGGAGGTCAGCCCCCAGCCT--------GGAAGCCAGCCCTGTGGATCATG-AGTCCAGCTCTGCA--TTGTCTAAGAGCCTGCCCCC-TGCAGACATACACGCAGCAGAGATGCACACATCTCAGAGCTGAAGAGGCTACAACGCGGTGGAAGG-TGCCCCAGAATGGACCAGTCCCCCTGT-------------AGTTTAGCAGGGAGTGTGTCTGTCACCCTAGGAAGCAGGGCC-TCACCCAGCTCCTTGGCCT-----------------TCACG-----CCAGCCTGCAGGGCAGTTTACAGTTCTGGACACACCTCTGC-CCTCACAGCACCTGTGTGAACAG----GCTTAACAGCAAC-CATATGGAAGCTTCTGCACCCCAAGGGATGCCCATCTTCTGAGTCTGAGTCTGTA---CCCCTTTTGCTTGCTACTCTGAAATA-----------TACCACTCTGTGAAAAGCCTTTAATTTGGGAATTGTCAAAGATGAGTATTCTAGTCTTTGTTGGAAACAAATTCACT---TGATGCATAACCCACATACTTAGCTCTTGTGCCGGCACATGCCCCCTAGCCC------CGAGGTCG---CCACGCTGTGCTGGCTTCCTGAAGCAGGCCAGTGATGGGTCCTGGTGCCTTTCCCAGAGCGAGAACAA------------------GTAGAAACAGCT-------------ACAGAAATTTGAAATCTCAATCTTTCCTACTACCTGCGCCTGCTTGTATACATTTGTCGCAACTTCATGAGGTAGCAAAAGGGTTGAATGAAACCAAGAGCTTTCTTACCGAGTCAGACTGGCTTCCCGAAG------------------------------------ATGCCACGCCATGGACCATCTCACAGAATGTCGTCAGC---------------------CAGGCTGAGGACAGCAACTCT------GTGT----GGAGG--------TTGTCCATTCTGGCTTTTTCTTTTCTTTTTCC----TTCTTTCCCTTAAAACTCAGTGAGCTGCAAACATCCTCATGTACCA-AGTA------------CTGATTAACCATGTGAAGACGGCATGAATTTTGTGCTGTCACGTGCTGGCTCCTGGTTCTTCCTAGGAGTTGATGCTGCAGATGATGCTCTCCAGGCACAAAGGGACACAGGCCTGGCCAACTCTTCTGAGGCTGTCCC-----CTTA----------------ACTGGCCACACGTGAAGTAGCTCCA-----CATTTTGGTTTTGGTGACACATAACC-----CAGGAAAGCAA-GGAG----------AATGTC----AACCCATTTCCATTTCGTTATCCTCAAATAAAAGGACCAGAAGCTTC-----TATGTGAAATTAACACCTAGATCCGCAAGCCTTCATTCCTCATCTGAA---------------- i canFam3.chr7 I 6771 C 0 a score=381274.000000 s hg38.chr1_KI270759v1_alt 403686 121 + 425601 CCCTGCTCCAAATA------TGTGAGGTGGAAGCATTAGCAG-CGGAGCAAAACTAAGATCTAAGAACGGGCGGTGGTGCTATTGTGTCCCTGGGAGTCACTCCACGTCGCATTGCAC---------------GGTG-------GTGCTG s panTro4.chr1 225161829 121 + 228333871 CCCTGCTCCAAATA------TATGAGGTGGAAGCACTAGCAG-TGGAGCAAAACTAAGACCTAAGAACGGGCGATGGTGCTATTGTGTCCCTGGGAGTCACTCCACATCGCATTGCAT---------------GGTG-------GTGCTG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226532197 121 - 229942017 CCCTGCTCCAAATA------TATGAGGTGGAAGCATTAGCAG-TGGAGCAAAACTAAGTTCTAAGAATGGGCAATGGTGCTATTGTTTCCCTGGGAGTCACTCCACATCGCATTGCAT---------------GGAG-------GTGCTG i ponAbe2.chr1 C 0 I 41 s nomLeu3.chr5 140423803 121 - 143122389 CCCTGCTCCAAATA------TATGAGGTGGAAGCATTAGCAG-CAGAGCAAAACTAAGATCTAAAAACGGGCAATGGTGCTATTGTTTCCCTGGGAGTCACTCCACATCGCACTGCAT---------------GGTG-------GTGCTG i nomLeu3.chr5 C 0 I 10 s rheMac3.chr1 17125674 121 - 229590362 CCCTGCTCCAAATA------TAGGAGGCGGAAGCATTAGCAG-CAGAGCAAAACTAAGATCTGAAAACAGGCAATGGTGCTATTGTTTCCCTGGGAGTCCCTCCGTGTCGCACTGCAG---------------GATG-------GTGCTG i rheMac3.chr1 C 0 I 10 s macFas5.chr1 223889618 121 - 227556264 CCCTGCTCCAAATA------TAGGAGGCGGAAGCATTAGCAG-CAGAGCAAAACTAAGATCTGAAAACAGGCAATGGTGCTATTGTTTCCCTGGGAGTCCCTCCGTGTCGCACTGCAG---------------GATG-------GTGCTG i macFas5.chr1 C 0 I 10 s papAnu2.chr1 16934999 121 - 220367699 CCCTGCTCCAAATA------TATGAGGCAGAAGCATTAGCAG-CAGAGCAAAACTAAGATCTGAAAACAGGCAATGGTGCTATTGTTTCCCTGGGAGTCCCTCCCTGTCGCACTGCAG---------------GATG-------GTGCTG i papAnu2.chr1 C 0 I 10 s chlSab2.chr25 82737418 121 + 85787240 CCCTGCTCCAAATA------TATGAGGCGGAAGCATTAGCAG-CAGAGCAAAACTAAGATCTGAAAACAGGCAATGGTGCTGTTGTTTCCCTGGGAGTCCCTCCGTGTGGCACTGCAG---------------GATG-------GTGCTG i chlSab2.chr25 C 0 I 10 s calJac3.chr19 14455231 127 - 49578535 CCCTGCTCCAAATACATGAGTGTGAGGTGGTAGCAGCAGCAG-CAGAGCAAAACTAAGATCTAACAAAGGGCAATGGTGATACCGTTTCCCTGGGAGTAAGTCTGCATTGCATTTCAT---------------GATG-------GGGCTG i calJac3.chr19 C 0 I 10 s mm10.chr1 178935506 135 + 195471971 CCCTGCTTCAAAGAATCTAGTGTGAGGCAGAAGCATTTTCAGCCCAAGTAAAACTAAAATCTGA-AACAGG-------GGCATCATTCTCCCAGGAGGAAACCCTTAGTTCACCTCACCTGGGCCAGGGGATAGGTG-------CGGTTG i mm10.chr1 I 421 I 6 s canFam3.chr7 36525693 132 + 80974532 ACCTGC-CCAAACAGTTCAGTGTCAGGT-GAGGCATTAGCCA-TAGAACAAAACTCAGACCCACAGAGGGGAAATGGTGATCTTGTTTCCCAGGGAGTAAATCCAGATTGCTTTCTGT---------------GGGGCTGGTTCATGCTG i canFam3.chr7 C 0 C 0 a score=69451.000000 s hg38.chr1_KI270759v1_alt 403807 32 + 425601 ---AGGAGCGAGAGTTTGCTTTATCATGGGCTTTC s panTro4.chr1 225161950 32 + 228333871 ---AGGAGCGAGAGTTTGCTTTATCATGGGCTTTC i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140423934 32 - 143122389 ---GGGAGCGAGAGTTTGCTTTATCATGGGCTTTC i nomLeu3.chr5 I 10 C 0 s rheMac3.chr1 17125805 32 - 229590362 ---GGGCGTGAGCGTTTGCTTCATCACGGGCTTTC i rheMac3.chr1 I 10 C 0 s macFas5.chr1 223889749 32 - 227556264 ---GGGCGTGAGCGTTTGCTTCATCACGGGCTTTC i macFas5.chr1 I 10 C 0 s papAnu2.chr1 16935130 32 - 220367699 ---GGGCGTGAGCGTTTGCTTCATCACGGGCTTTC i papAnu2.chr1 I 10 C 0 s chlSab2.chr25 82737549 32 + 85787240 ---GGGCGTGAGCGTTTGCTTCATCACAGGCTTTC i chlSab2.chr25 I 10 C 0 s calJac3.chr19 14455368 32 - 49578535 ---GGGAGCGGTGGCGTGCTTTGTCACGGGCTCAC i calJac3.chr19 I 10 C 0 s mm10.chr1 178935647 20 + 195471971 ---GGGAGCTGGGGTTTGCTTTC------------ i mm10.chr1 I 6 C 0 s canFam3.chr7 36525825 35 + 80974532 TGACCAAGTGACAGCGTGCTTAATCCTGGGCTTGC i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226532318 41 - 229942017 I a score=125932.000000 s hg38.chr1_KI270759v1_alt 403839 35 + 425601 AGTTCCCACCTGCGAGCTGCAAACTTTG------ATCTTGT s panTro4.chr1 225161982 35 + 228333871 AGTTCCCACCTGCGAGCTGCAAACTTTG------ATCTTGT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226532359 35 - 229942017 AGTTCCCACCTGCAAGCTGCAAACTTTG------ATCTTGT i ponAbe2.chr1 I 41 I 733 s nomLeu3.chr5 140423966 35 - 143122389 AGTTCCCACCTGCGAACTGCAAACTTTG------ATCTTGT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17125837 34 - 229590362 AGTTCCCACCCGCGAG-TGCAAACTTTG------ATCTTAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223889781 35 - 227556264 AGTTCCCACCCGCGAGCTGCAAACTTTG------ATCTTAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16935162 35 - 220367699 AGTTCCCACCCGCGAGCTGCAAACTTTG------ATCTTAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82737581 35 + 85787240 AGTTCCCACCCGCGAGCTGCAAACTTTG------ATCTTGT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14455400 34 - 49578535 GGACCCCACCTAAGAGCTGCGAAC-TGG------ATCTTCT i calJac3.chr19 C 0 C 0 s mm10.chr1 178935667 41 + 195471971 AGTACCCACCTAAGAGCTGAATCTTTTGAGCTGAATCTTTT i mm10.chr1 C 0 I 4 s canFam3.chr7 36525860 35 + 80974532 GGTTCCCACCTGAGAGCTGCAATCTTTG------ATCTTCT i canFam3.chr7 C 0 C 0 a score=65384.000000 s hg38.chr1_KI270759v1_alt 403874 19 + 425601 TGTCCTTGAATTCCCCTCT s panTro4.chr1 225162017 19 + 228333871 TGTCCTTGAATTCCCCTCT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140424001 19 - 143122389 TGTCCTTGAATTCCCCTCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17125871 19 - 229590362 TGTCCTTGAATTCCCCTCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223889816 19 - 227556264 TGTCCTTGAATTCCCCTCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16935197 19 - 220367699 TGTCCGTGAATTCCCCTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82737616 19 + 85787240 TGTCCTTGAATTCCCCTCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14455434 19 - 49578535 TGTCCTTGAATTCCCCTCG i calJac3.chr19 C 0 C 0 s mm10.chr1 178935712 17 + 195471971 TATCTCTGAA--CCCTTCT i mm10.chr1 I 4 I 2 s canFam3.chr7 36525895 19 + 80974532 CGTCCTTGAACTCCCCTCT i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226532394 733 - 229942017 I a score=2222372.000000 s hg38.chr1_KI270759v1_alt 403893 746 + 425601 ACATCACGAGGAAGCTGTCT----CTTTCATCTCTTCCGGATTTGGAATCAGAACACTCTGCCCGTTGTTTATTCGCCAGTTGCCATTCTTAACATGGGGGAGCATTAAGATGCAAATGCAGAGATGTGTCCT-----------GTCTTGACAAAGGTGGGAACCCCTGAGCT------GGAGAAGGGGCTCCTCTCATGAGAAGCTGGGGTAAACAG------------CCAGGCATCGCAGCGTGGGGAATTAGACAGGCA-------------GGAATCTGGCCTGGTTTGTCATAAAT-TAGCCTTCAACTTGAAGTCTATTATGTTCTTATAAGGCGGTAGTGACTTCAGTCCAGCCGCATCTACCATCCAGGGTGGAGGTTCAAAAAGTCTTATACGCACCTACAAGTCTCACGCTTGCTGCTCAGACTTTCTG----------ATAAAA------TCTCAGAGTTCTGTTTGTATTGACCAAAAATGCAGTTG-TGCCCACT-----TGGGTGTGTATCTC---------ATGTCCTTGT---AAACCAGCCACCTTCTTT---GG--------------------------------------------------------------------------------------------------ATAGAAGGCAAGGCTGACA--AATCTGCAGATTTGTTCAATGCAAACACAGCCGTCTATATCATTGGCCACT-----GCTGA--T-TATATTGAGTGTTTTT-----------------AGGTTTTTTAGGTTT-CTTATTCCAAAAAGGATTTTAGACTGTAA----AATGACTAAAGATGAGTTAATTTCCAAACTAAAAAAGGAAGGAGTCCTGCCTGTACTCATTGTTCTTTCCTGCTGGACTAGTAACCCATTCTTGGAGC----ACACACAGAG----TCCCTCGCTTCTA----------- s panTro4.chr1 225162036 746 + 228333871 ACATCATGAGGAAGCTGTCT----CTTTCATCTCTTCCGGATTTGAAATCAGAACACTCTGCCTGTTGTTTATTCGCCAGTTGCCATTCTTAACATGGGGGAGCATTAAGATGCAAATGCAGAGATGTGTCCC-----------GTCTTGACAAAGGTGGGAATCCCGGAGCC------GGAGAAGGGGCTCCTCGCATGAGAAGCTGGGGTAAACAG------------CCAGGCATCGCAGCGTGGGGAATTAGACAGGCA-------------GGAATCTGGCCTGGTTTGTCATAAAT-TAGCCTTCAACTTGAAGTCTATTATGTTCTTATAAGGCGGTAGTGACTTCAGTCCAGCCGCATCTACCATCCAGGGTGGAGGTTCAAAAAGTCTTATACGCACCTACAAGTCTCAGGCTTGCTGCTCAGACTTTCTG----------ATAAAA------TCTCAGAGTTCTGTTTGTATTGACCAAAAATGCAGTTG-TGCCCACT-----TGGGTGTGTATCTC---------ATGTCCTTGT---AAACCAGCCACCTTCTTT---GG--------------------------------------------------------------------------------------------------ATAGAAGGCAAGGCTGACA--AATCTGCAGATTTGTTCAATGCAAACACAGCCGTCTATATCATTGGCCACT-----GCTGA--T-TATATTGAGTGTTTTT-----------------AGGATTTCTAGGTTT-CTTATTCCAAAAAGGATTTTAGACTGTAA----AATGGCTAAAGATGAGTTAATTTCCAAACTAAAAACGGAAGGAGTCCTGCCTGTATTCATCGTTCTTTCCTGCTGGACTAGTAACCCATTCTTGGAGC----ACACACAGAG----TCCCTCGCTTCTA----------- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226533127 738 - 229942017 ACATCATGAGGAAGCTGTCT----CTTTCATCTCTTCCGGATTTGAAATCAGAACACTCTGCC---TGTTTATTTGCCAGTTGCCATTCTTAAC--GGGGGAGCATTAAGATGCAAATGCAGAGATGTGTCCC-----------GTCTTGACAAAGGTGGGAATCCCTGAGCC------GGAGAAGGGGCTCCTCGCATGAGAAGCTGGGGTAAAAAG------------CCAGGCATCGCAGCGTGGGGAATTCGGCAGGCA-------------GGAATCTGGCCTGGTTTGTCATAAAT-TAGCCTTCAACTTGAAGTCTATTATATTCTTATAAGGAGGTAGTGACTTCAGTCCACCTGCATCTACCATCCAGGGTGGAGGTTCAAAAAATCTTATACACACCTACAAGTCTCACGCTTGCTGCTCAGA-TTTCTG----------ATAAAA------TCT--GAGTTCTGTTTGTATTGACCAAAAATGCAGTTG-TGCCCACT-----TGGGCGTGTATCTC---------ACGTCCTTGT---AAACCAGCCACCTTCTTT---GG--------------------------------------------------------------------------------------------------ATAGAAGGCAAGGCTGACA--AGTCTGCAGATTTGTTCAGTGCAAACACAGCCATCTATGTCATTGGCCACT-----GCTGA--T-TATATTGAGTGTTTTT-----------------AGGTTTTTTAGGTGT-CTTATTCCAAAAAGGATTTTAGACTGTAA----AATGACTAAAGATGAGTTAATTTCCAAACTAAAAATGGAAGGAGTCCAGCCTGTACTCATTGTTCTTTCCTGCTGGACTAGTAACCCATTCTTGGAGC----ACACACGGAG----TCCCTCGCTTCTa----------- i ponAbe2.chr1 I 733 I 169 s nomLeu3.chr5 140424020 751 - 143122389 ACATCATGAGGAAGCTGTCT----CTCTCATCTCTTCTGGATTTGAAATCAGAACACTCTGCCTGTTGTTTATTCGCCAGTTGCCATTCTTAACATGGGGGAGCATTAAGATGCAAATGCAGAGATGTGTCCC-----------GTCTTGACAAAGGTGGGAATCCCTGAGCCTGAGCTGGAGAAGGGGCTTCTCGCATGAGAAGCTGGGGTAAAAAG------------CCAGGCATCGCAGCATGGGGAATTCGGCAGGCA-------------GGAATCTGGCCTGGTTTGTCATAAAC-TAGCCTTCAACTTGAAGTCTATTATATTCTTATAAGGCGGTAGTGACTTCAGTCCAGCCGCATCTACCATCCAGGGTGGCCGTTCAAAAAGTCTTATACGCACCTACAAGTCTCACGCTTGCTGTTCAGA-TTTCTG----------ATAAAA------TCTCAGAGTTCTGTTTGTATTGACCAAAAATGCGGTTG-TGCCCACT-----TGGGCGTGTATCTC---------ATGTCCTTGT---AAACCAGCCACCTTCTTT---GG--------------------------------------------------------------------------------------------------ATAGAAGGCAAGGCTGACA--AGTCTGCAGATTTGTTCAATGCAAACACAGCCATCTATATCATTGGCCACT-----GCTGA--T-TATATTGAGTGTTTTT-----------------AGGTTTTTTAGGTTT-CTTATTCCAAAAAGGATTTTAGACTGTAA----AATGACTAAAGATGAGTTAATTTGCAAACTAAAAACGGAAGGAGTCCTGCCTGTACTCATTGTTCTTTCCTGCTGGACTAGTAACCCATTCTTGGAGC----ACACACAGAG----TCCCTCACTTCTA----------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17125890 741 - 229590362 GCATCATGGGGAAGCTGTGT----CTTTCATCTCTTCCGGGTTGGAAATCAGAGCACTCT-CCTGTTGTTTATTCGCCAGTTGCCGTTCTTAACATGGGGGAGCATTAGGATGCAAATGCAGAGACGTGTCC------------GTCTTGACGAAGGTGGGAATCCCTGAGCC------GGAGAAGGGGCTCC-CGCATGAGAAGCTGCGATAAAAAG------------CCAGGCATCGCAGCGTGGGGAATTCGGCAGGCA-------------GGAATCTGGCCTGGTTTGTCATAAAT-TAGCCTTAAACTTGAAGTCTACTATATTCTTAGAAGACGGCAGTGGCTTCAGTCCAGCCGCATCTACCATCCAGAGTGGAGGTTCAAAAAGTCTTATACGCACCTAGAAGTCTCACGCTTGCTGCTCAGA-TTTCTG----------ACAAAA------TCTCAGAGTTCTGTTTGTATTGACAAAAAATGCAGTTG-TGCTCACT-----TGGGTGTGTATCTC---------ATGTCCTTGT---AAACCAGCCACCTTCTCT---GG--------------------------------------------------------------------------------------------------ATCGAAGGCAAGGCTGGCA--AGTCTGCGGATTTGTTCAGTGCAAACACAGCCGCCTATATCATTGGCCACT-----GCTGA--T-TATATTGAGTGTTTCT-----------------AGGTTTTTTAGGTTT-CTTATTCCAAAAAGGCTTTTAGACTGTAA----AATGACTAAAGATGAGTTAATTTCCAGACTGAAAAC-GAAGGAGTCCTGCCTTTACTCATTGTTCTTTCCTGCTAGACTAGTAACCCGTTCTTGGAGC----ACACACAGAG----TCCCTCGCTTCTA----------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223889835 742 - 227556264 GCATCATGGGGAAACTGTCT----CTCTCATCTCTTCCGGATTGGAAATCAGAGCACTCTGCCTGTTGTTTATTCGCCAGTTGCCGTTCTTAACATGGGGGAGCATTAGGATGCAAATGCAGAGACGTGTCC------------GTCTTGACGAAGGTGGGAATCCCTGAGCC------GGAGAAGGGGCTCC-CGCATGAGAAGCTGCGATAAAAAG------------CCAGGCATCGCAGCGTGGGGAATTCGGCAGGCA-------------GGAATCTGGCCTGGTTTGTCATAAAT-TAGCCTTAAACTTGAAGTCTACTATATTCTTAGAAGACGGCAGTGGCTTCAGTCCAGCCGCATCTACCATCCAGAGTGGAGGTTCAAAAAGTCTTATACGCACCTACAAGTCTCACGCTTGCTGCTCAGA-TTTCTG----------ACAAAA------TCTCAGAGTTCTGTTTGTATTGACAAAAAATGCAGTTG-TGCTCACT-----TGGGTGTGTATCTC---------ATGTCCTTGT---AAACCAGCCACCTTCTCT---GG--------------------------------------------------------------------------------------------------ATCGAAGGCAAGGCTGGCA--AGTCTGCGGATTTGTTCAGTGCAAACACAGCCGCCTATATCATTGGCCACT-----GCTGA--T-TATATTGAGTGTTTCT-----------------AGGTCTTTTAGGTTT-CTTATTCCAAAAAGGCTTTTAGACTGTAA----AATGACTAAAGATGAGTTAATTTCCAGACTAAAAAC-GAAGGAGTCCTGCCTTTACTCATTGTTCTTTCCTGCTAGACTAGTAACCCGTTCTTGGAGC----ACACACAGAG----TCCCTCGCTTCTA----------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16935216 741 - 220367699 ACATCATGAGGAAGTTGTCT----CTTTCATCTCTTCC-GATTGGAAATCAGAGCACTCTGCCTGTTGTTTATTCGCCAGTTGCCATTCTTCACATGGGGGAGCATTAGGATGCAAATGCAGAGACGTGTCC------------ATCTTGACGAAGGTGGGAATCCCTGAGCC------GGAGAAGGGGCTCC-CGCATGAGAAGCTGCGATGAAAAG------------CCAGGCATCGCAGCGTGGGGAATTCGGCAGGCA-------------GGAATCTGGCCTGGTTTGTCATAAAT-TAGCCTTAAACTTGAAGTCTACTATATTCTTATAAGACGGCAGTGGCTTCAGTCCAGCCGCATCTACCATCCAGAGTGGAGGTTCAAAAAGTCTTATACGCACCTACAAGTCTCACGCTTGCTGCTCAGA-TTTCTG----------ACAAAA------TCTCAGAGTTCTGTTTGTATTGACAAAAAATGCAGTTG-TGCCCACT-----TGGGCGTGTATCTC---------AAGTCCTTGT---AAACCAGCTACCTTCTTT---GG--------------------------------------------------------------------------------------------------ATCGAAGGCAAGGCTGGCA--AGTCTGCGGATTTGTTCAATGCAAACACAGCCGCCTATATCATTGGCCACT-----GCTGA--T-TATATTGAGTGTTTCT-----------------AGGTTTTTTAGGTTT-CTTATTCCAAAAAGGCTTTTAGACTGTAA----AATGACTAAAGATGAGTTAATTTCCAGACTAAAAAC-GAAGGAGTCCTGCCTTTACTCATTGTTCTTTCCTGCTGGACTAGTAACCCGTTCTCGGAGC----ACACACAGAG----TCCCTCGCTTCTA----------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82737635 741 + 85787240 ACGTCATGAGGAAGCTGTCT----CTCTCATCTC-TCCGGATTGGAACTCAGAACACTCTGCCTGTTGTTTATTTGCCAGTTGCCATTCTTAACATGGGGGAGCCTCAACATGCAAATGCAGAGACGTGTCC------------GTCTTGACGAAGGTGGGAATCCCTGAGCC------GGAGAAGGGGCTCC-CGCATGAGAAGCTGCGATAAAAAG------------CCAGGCATCGCAGCGTGGGGAATTCGGCAGGCA-------------GGAACCTGACCTGGTTTGTCATAAAT-TAGCCTTAAACTTGAAGCCTACTATATTCTTATAAGGCGGCAGTGGCTTCAGTCCAGCCGCATCTACCATCCAGAGCGGAGGTTCAAAAAGTCTTACACGCACCTGCAAGTCTCACGCTTGCTGCTGAGA-GTTCTG----------ATAACA------TCTCAGAGTTCTGTTTGTATTGACCAAAAATGCAGTTG-TGCCCACT-----TGGGTGTGTACCTC---------ATGTCCTTGC---AAACCAGCTACCTTCTTT---GG--------------------------------------------------------------------------------------------------ATCGAAGGCAAGGCTGGCA--AGTCTGCGGATTTGTTCAATGCAAACACAGCCGCCTATATCGTTGGCCACT-----GCTGA--T-TATATTGAGTGTTTCT-----------------AGGTTTTTTAGGTTT-CTTATTCCAAAAAGGCTTTTAGACTTTAA----AATGACTAAAGATGAGTTAATTTCCAGACTAAAAAC-GAAGGAGTCCTGCCTTTACTCATTGTTCTTTCCTGCTGGACTAGTAACCTGTTCTCGGAGC----ACACACAGAG----TCCCTCGCTTCTA----------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14455453 713 - 49578535 ACATCATGAGGAAGCTGTCTCTAACTTCCATCTCTTCCGAATTTGAA--CGGAACACCCTGCCTGGTGTTTAATTGCCAACTGCCATCCTTAACGTGGGGGAGCGTGAAGATGCAAATGCAGAGATGTGTCCC-----------ATCGTGACAAAGGTGGGAATC--------------GTACCAGGAGCCCTGAGCCCAAGAA---GGGATCAACAG------------CCATACATGGCAGCATGGGGAATTCCACAGGCA-------------GGAACCTGGCCCGGTTTGTTGCAAAT-TAGCCTTAAACTTGAAGTCGAATACATTCTTATAAGGTGGCAGTGACTTCAGTCCGGCCGCATCCACCATCCAGGGTGGAGGTTCAAAACACCTTACACACACCTGCAAATCTCATGCCTGCTGCTCAGA------------------------------------GTTCTGTTTGTGTTGACAAAAAATGCAGTCA-CGCCCACC-----TGGGTGTGTGTCTC---------ATGCCCCTGT---AAAGCAGCCACCTG---T---GG--------------------------------------------------------------------------------------------------GTAGAAGGCAAGGCTGGTG--GGTCTGCACATTTGTTCACTGCAAATGCAGCCACCTAGACCAGCGGCCGCT-----GCTGA--T-TATAGCGAGTGT--------------------------TTTTAGGTTT-CTTATTCCAAAAAGGATTTTAGACCGTAAAACCAATGACTAAAGATGACTTAATTTCCAAACTAAAAATGGAAGGATTCCTGCCTTTGCTCACTGTCCTTTCCTGCTGGACTAGTAACACACTATTGGAGCTCAGACAAAAAGAG----TCCCTCGCTTTTG----------- i calJac3.chr19 C 0 C 0 s mm10.chr1 178935731 798 + 195471971 -AAACCTCCGGACGCTGTCTCTAACTTTCATCTCAGCAGAGGTGAAACCCAGACCACTCT-CTTGTGGTTTCACCTTCAGTTGCTGTTCCCAACAT-GGGGAACAT-AAGATACAGTTTCAGAGATGGACCCTCTGATGGCATAGCAATGACTCAAGTAATGACCCCCAAGCA------AGAAAATG-GCTCC-TGAGCTAGAGACTAGTGTAAGGAACATCACACAGCTCCAGGAAATGGGGCAAAGGGTGGGCAGCAGGAATGTTCATCCAGTGGGAACCAGGTCCCATTTGCCACAAAT-CAGCTTAAAGATGGAGGTCTA--ACATCC--------AGGAAGGAGCTCCAAT------------GCTCTGTAGGGAAGTGCTCCCAAGGGACCTA---ACACTCAGG----TTGTGCTTGCTGCAGGGA-GTTCCA----------TCCAAA------CTT----------------TGAGCAAGAAAAGCATCTG----CCCTG-----TGGGCATGGATCCC---------ACATCCTTGA---GGAACAGCCACCTTCTCT---GGTCTTCGGAGTCTCGTGCTCTTCGTTCATGAGGATCCATTCATATGCCTTCTTCACAGCTCTGTATTTCAATCCCGCTGTCTGCCCTTGACTTTCCGGTAAAGAAGGTGAGGTTGGCAGGAGCCCACA-ATTTGCTCAGTGCAAACATGGCC----------TTTGCCGATCTGTAGCTGAGCC-CGAAGTGAATGTT-------------------------TTTTGGGTTTCCTTATTCCACCAAGAATTGTAGTCTGTAAAAGAAATTACTAAAAATGAGTTCCTTCCAAAATCGAAAAC---AGATTTCCTGAATGT------TGTTCTTTCC---------------------TTGGGAC----ATATGCAAAAACATTTCCTCCCTTTTA----------- i mm10.chr1 I 2 C 0 s canFam3.chr7 36525914 764 + 80974532 CCATCACTGGGAAGCTGTTGCTAACGTTCATCTCTTCCAGATTTGAAATCAGAACACTTTGTGTGGTGTTTTATGTCCAGTTGCTATTGTGAACACACAGAACTCATA----GCAGATGCAGAAGGCAGGCT------------CTACTGATTCTGGTAGGCGTC--------------CTACAAGGGACCCAGAGCTGGGGAAGGCATGG----AAG------------CCATGCAGCCCAGCATGCGGGACTCGACAGGCA-------------AGAATCTGGCCA---TTGTTGTAAATGTAGCCTCAAGCTTGAAGTCT---GCATTCCTGGAAGGTGGCAGTGACCTCCCTGTAGCCCCAAATGCCATCGGGGCAGGGGGCTCAAAAAGTCTGACACACATTTACAA--CTTAAGTTCGTT-CTTGGA-CTTCTGTGCTTGCTGAGCAAGAAACTCTTCTCTGGGCTC------------CAAATTATAGAGCTGATGTCCAATTTAGGTTGATATGTAACCTTTTCCATAAGTGTCACTATGTGAAAGCAGCTGACTGCTTTGTGGA--------------------------------------------------------------------------------------------------ACAGAGGTCCAGGCTTGTGAGAGGCGACAGACTGGC-CTCTGCAGACACGGCGTCCAGCGTCCTCAGCCATG-----GCCAG--TGTATGGTTGAGGCTTCCAAAAAAGCAATGCAGTGAAGGTTTTAAACTTC-CTTAATCCCAAAA-------AGGCCGCAAAAGAAATGACTAAAGCTGAGTCCATTCCACGATTGAAATC---AGGAGT-----------TTATTGTTACTTCCTTCTGGAGTCTTAGCCCACTCT--GAGC----ATATACTGAAAGATTTCCTCACCGTTAACTCACTGTTA i canFam3.chr7 C 0 C 0 a score=41466.000000 s hg38.chr1_KI270759v1_alt 404639 15 + 425601 AAGACAATACGTCTT s panTro4.chr1 225162782 15 + 228333871 AAGACAATACGTCTT i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140424771 15 - 143122389 AAGACAATACGTCTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17126631 15 - 229590362 AAGACAATACGTCTT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223890577 15 - 227556264 AAGACAATACGTCTT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16935957 15 - 220367699 AAGACAATATGTCTT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82738376 15 + 85787240 AAGACAATACGTCTT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14456166 15 - 49578535 ATGACAGTATGTCTT i calJac3.chr19 C 0 C 0 s mm10.chr1 178936529 14 + 195471971 -GGGTAGTTTATCTT i mm10.chr1 C 0 I 1 s canFam3.chr7 36526678 15 + 80974532 AAGGTGATCTCTTTT i canFam3.chr7 C 0 C 0 e ponAbe2.chr1 226533865 169 - 229942017 I a score=4295462.000000 s hg38.chr1_KI270759v1_alt 404654 1353 + 425601 AAACCCTGAAAACTTGCCAGTGAGAA--------AGAGGTTGAAAGTCCTGTTTGCTATTAGTTGA----GGCT--AAGCCGTCTGCTGCCACTGTCCCTGGGGCCTCCATGCTGCCGCCGGGGT-ATGTGGCCCAGCTGTCCCCCCA-TGAAGGACACTCTTCAATGCCACCACACGGGAG---TCTGGGCAGGGAGGAAAGGC--ACACAGCCC---ACTTTTCTCTGCACCAAATGAAACAAAGCTGGGTGTTCAGTGTCACTGATGCAA---GTAAATG-GGTCTCAAAT--TTTGGTGG-----------GGGC------------------------AGTGTTTCTTTGGATTCTGATACCTC-TTTTTCCACCTCCAGAAAGTATCTGT----------CAACATTG-------GTGGGTAACAGCTTATAAAGTGCATCACTTAGTAATCTTCCTGA-----CAAAATGACAC----------------------------ATTTTAAAATTACAACCTGTTCATTATTTCCATCATAATGCAAGCGTAATTC-TAATCCGGGAGAAGATACTGTCATTTAAGCTCATCTTCTCAAAAAAAT--------TTTT--TCTGAAAATTCCTGGAAACTAATTTATCCCTCCC-TAAACAAACACATTCTGCTTTTGGGTGGCCCTACCCAGAACCTGCAG-CAATGTCATAACACT-GGACACAGTGCG-GC-TTGGGGCAGTATCAAGCCTTCATTGCATACAAACCTTAATCTCTAAGCATAGTTGTTCCCAAGGTCCACACGTGTGGAGGCGAGTACTGAAATACCACACTCACACATCTATTCCATGCGTACCTAGAAATTACCTTCAACACTAAAAAAGGTTCCTTCTTTCATTCCCTATCCTGCT----AACAGCCCACATTGTAATATTTGATTTATGAAGAAGTTCTAATTTATTTGTGAACTCAGGATGTTGCTTTACAGCATTGCTCGTGTTCTCTCATTTACTTATTATGCATCACGGTTGGAAATGCTATCCACGTGCCGTGCATCGAGGTGGAGAT--TTGCTGGATCTGTCTGTGGCTATT-TTTTTCCATGTTTTTCTCACTCAAGCAAAGTCTGTTA-GTGGAAACATGGGCTGGGGGATGGGGAGAGGACAGATAAAGCAAGAGAATAGGGATTAGGGTCCAATCCTCAATGCACAGGGCTTAGTTCAAAATCTAAGCTGTTTCTGTAGTAAGCAGCCAAA-----TGGGAAAGATCCCTTCGTTTTGAATTTG-ATGAGAATGGGCTTGGAAATCCACGCCCACCGGCTTGCA------CGGAAGAGGACTCAGCCTCTTCCTAATGGTTCAACATTCAATTCCTG-AGGAAAGTGCTGATAGTATTAGTTCCCTACATTTCCCTAAGACTCCCATCCA---ACCCCTAGTGCTACTGAAGAGGGTTTGGGAAAGCAATTGG-AGTTCCTTAGCTTGGATATATAT s panTro4.chr1 225162797 1366 + 228333871 AAACCCTGAAAACTTGCCAGCGAGAA--------AGAGGTTGGAAGTCCTGTTTGCTATTAGTTGA----GGCT--AAGCCGTCTGCTGCCACTGTCCCTGGGGCCTCCATGCTGCCACCGGGGT-GTGTGGCCCAGCTGTCCCCCCA-TGAAGGACACTCTTCAATGCCACCACACGGGAG---TCTGGGCAGGGAGGAAAGGC--ACACAGCCC---ACTTTTCTCTGCACCAAATGAAACAAAGCTGGGTGTTCAGTGTCACTGATGCAA---GTAAATG-GGTCTCAAAT--TTTGGTGG-----------GGGC---------AGGTGGTA--CACTTAGTGTTTCTTTGGATTCTGATACCTC-TTTTTCCACCTCCAGCAAGTATCTGT----------CAACATTG-------GTGGGTAACAGCTTATAAAGTGCATCACTTAGCAATCTTCCTGA-----CAAAATGACAC----------------------------ATTTTAAAATTACAACCTGTTCATTATTTCCATCATAATGCAAGCGTAATTC-TAATCCAGGAGAAGATACTGTCATTTAAGCTCATCTTCTCGAAAAAAT--------TTTT--TCTGAAAATTCCTGGAAACTAATTTATCCCTCCC-TAAACAAACACATTCTGCTTTTGGGTGGCCCTACCCAGAACCTGCAG-CAATGTCATAACACT-GGACACAGTGCG-GC-TTGGGGCAGTATCAAGCCTTCGTTGCATACAAACCTTATTCTCTAAGCATAGTTGTTCCCAAGGTCCACACGTGTGGAGGCGAGTACTGAAATACCACACTCACACATGTATTCCATGCGTACCTAGAAATTACCTTCAACACTAAAAAAGGTTCCTTCTTTCATTCCCTATCCTGCT----AACAGCCCACATTGTCATATTTGCTTTATGAAGAAGTTCTAATTTATTTGTGAACTCAGGATGTTGCTTTACAGCATTGCTCGTGTTCTCTCATTTACTTATTATGCATCACGGTTGGAAATGCTATCCACGTGCCGTGCGTCGAGGTGAAGAT--TTGCTGGATCTGTCTGTGGCTATT-TTTTTCCATGTTTTTCTCACTCAAGCAAAGTCTGTTA-GTGGAAACATGGGCTGGGAGATGGGGAGAGGACAGATAAATCAAGAGAATAGGGATTAGGGTCCAGTCCTCAATGCACAGGGCTTAGTTCAAAATCTAAGCTGTTTCTGTAGTAAGCAGCCAAA-----TGGGAAAGATCCCTTCGTTTTGAATTTG-ATGAGAATGGGCTTGGAAATCCACGCCCACCGGCTTGCA------TGGAAGAGGATCCAGCCTCTTCCTAATGGTTCAACATTAAATTCCTG-AGGAAAGTGCTGATAGTATTAGTTCCCTCCATTTCCCTAAGACTCCCATCCA---ACCCCTAGTGCTACTGAAGAGGGTTTGGGAAAGCAACTGG-AGTTCCTTAGCTTGGATATATat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226534034 1355 - 229942017 AAACCCTGAAAACTTGCCAGTGGGAA--------AGAGGTTGAAAGTCCTGTTTGCTATTAGTTGA----GGCT--AAGCCGTCTGCTGCCACTGTCCCTGGGGCCTCCATGCTGCCGCCGGGGC-GTGTGGCCCAGCTGTCCCCCTG-TGAAGGACACTCTTCAATGCCACCACATGGGAG---TCTGGGCAGGGAGGAAAGGC--ACACAGCCC---ACTTTTCTCCGCACCAAATGAAACAAAGCTGGGTGTTTAGTGTCACTGATGCAA---GTAAATG-GGTCTCAAAT--TTTGGCGG-----------GGGCTAGGGGGGCAGGTGGTA--GACTTAGTGTTTCTTTGGATTCTGGTATCTC-TTTTTCCACCTCCAGAAAGTATCTGT----------CAACATTG-------GTGGGTAACAGCTTATAAAGTGCATCACTTAGCAATCTTCCTGA-----CAAAATGACAC----------------------------ATTTTAAAATTACAACCTGTTCATTATTTCCATCATAATGCAAGCATAATTCATAATCCAGGAGAAGTTATTGTCATTTAAGCTCA---TCTCAAAAAATT--------TTTT--TCCGAAA------------------ATCCCTCCC-TAAACAAACACATTCTGCTTTTGGGTGGCCCTACCCAGAACCTGCAG-CGATGTCATAACACT-GGACACAGTGGG-GC-TTGGGGCAGTATCAAGCCTTCATTGCATACAAGCCTTATTCTCTAAGCATAGTTGTTCCCAAGATCCACACGTGTGGAGGCGAGTACTGAAATACCACACTCACACATCTATTCCATGCGTACATAGAAATTACCTTCAACACTAAACAAGGCTCCTTCTTTCATTCCCTATCCTGCT----AACAGCCCACATTGTCATATTTGATTTATGAAGAAGTTCTCATTTATTTGTGAACTCGGGATGTTGTTTTACAGCATTGCTCGTGTTCTCTCATTTACTTATGATGCATCACGGTTGGAAATGCTATCCACATGCCGTGCATCGAGGTGGAGAT--TTGCTCGATCTGTCTGTGGCTATT-TTTTTCCATGTTTTTCTCACTCAAGCAAAGTCTGTTA-GTGGAAACATGGGCTGGGGGATGGGGGGAGGACAGATAAATCAAGAGAATAGGGATTAGGGTCCAATCCTCAATGCACAGGGCTTAGTTCAAAATCTAAGCTGTTTCTGTAGTAAGTAGCCAAA-----TGGGAAAGATCCCTTCATTTTGAATTTG-ATGAGAATGGGCTTGGAAATCCATGCCCACCGGCTTGCG------TGGAAGAGGATCCAGCCTCTTCCTACTGGTTCAACATTAAATTTCTG-AGGAAAGTGCTGACAGTGTTCATTCCCTACATTTCCCTAGGACTCCCATCCA---ACCCCTAGTGCTACTGAAGAGGGTTTGGGAAAGCAACCGG-AGTTCCTTAGCTTGGATATATAT i ponAbe2.chr1 I 169 C 0 s nomLeu3.chr5 140424786 1365 - 143122389 AAACCCTGAAAACTTGCCAGTGAGAA--------AGAGGTTGAAAGTCCTGTTTGCTATTAGTTGA----GGCT--AAGCCGTCTGCTGCCACTGTCCCTGGGGCCTCCATGCTGCCGCCGGGGT-GTGTGACCCAGCTGTCCCCCCA-TGAAGGACACTGTTCAGTGCCACCACACAGGAG---TCTGGGCAGGGAGGAAAGAC--ACACAGCCC---ACTTTTCTCTGCACCAAATGAAACAAAGCTGGATGTTCAGTGTCACTGATGCAA---GTAAATG-GGTCTCAAAT--TTTGGCGG-----------GGGC---------AGGTGGTA--CACTTAGTGTTTCTTTGGATTCTGATATATC-TTTTTCCACCTCCAGAAAGTATCTGT----------CAACATCG-------GTGGGTAACAGCTTATAAAGTGCATCACTTAGCAATCTTCCTGA-----CAAAGTGACAC----------------------------ATTTTAAAATTACAACCTGTTCATTATTTCCATCATAATGCAAGCATAATTC-TAATCCAGGAGAAGATACTGTCTTTTAAGCTCACCTTCTCAAAAAATT--------TTTT--TCTGAAAATTCCTAGAAACTAATTTATCCCTCCC-TAAACAAACACATTCTGCTTTTGGGTGGCCCTACCCAGAACCTGCAG-CAATGTCATGACACT-GGACACAGTGGG-GC-TTGGGGCAGCATCAAGCCTTCATTGCATACCAGCCTTATTCTCTAAGCATAGTTGTTCCCAAGGTCCACACGGGTGGAGGCGAGTACTGAAATACCACACTCACACATCTATTCCATGCATACATAGAAATTACCTTCAACACGAAAAAAGATTCCTTCTTTCATTCCCTATCCTGCT----AACAGCCCACATTGTCATATTTGATTTATGAAGAAGTTCTAATTTATTTGTGAACTCAGGATGTTGTTTTACAGCATTGCTCGTGTTCTCTCATTTACTTATTATGCATCACGGTTGGAAATGC-ATCCACGTGCCGTGCATCAAGGTGGAGAT--TTGCTGGATCTGTCTGTGGCTATT-TTTTTCCATGTTTTTCTCACTCAAGCAAAGTCTGTTA-GTGGAAACATGGGCCAGGGGATGAGGGGAGGACAGATAAATCAAGAGAATAGGGATTAGGGTCCAATCCTCAGTGCACAGGGCTTAGTTCAAAATCTAAGCTGTTTCTGTAGTAAGTGGCCAAA-----TGGGAAAGATCCCTTCATTTTGAATTTG-ATGAGGATGGGCTTGGAAATCCACGCCCACCGGCTTGCA------TGGAAGAGGATCCAGCCTCTTCCTACTGGCTCAACATTAAATTTCTG-AGGAAAGTGCTGACAGTATCGGTTCCCTACATTTCCCTAAGACTCCCATCCA---ACCCCTAGTGCTACTGAAGAGGGTTTGGGAAGGCAACCGG-AGTTCCTTAGCTTGGATATATAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17126646 1354 - 229590362 AAACCCTGCAACCTTGCCAGTGAGAA--------AGAGGTTGAAAGTCCTGTTGGCTATTAGCTGA----GGCT--AAGCCGTCTGCTGCCGCCGTCCCTGGGGCCTCCATGCTGCCACCGGGGT-GTGTGGCCCAGCTGTGCCCCCACTGGAGGACACTCGTCAGTGCCACCACATGGGAG---TCTGGGCGGGGAGGAAAGGC--ACACAGCCC---ACTTTTCTCTGCACCAAATGAAACCAAGCTGGGTGTTCAGTGCCACTGATGCAA---GTAAATG-GGTCTCAGAT--TTTGGGGG-----------GGCT--GGGGGGCAGGCGGTA--GACACAGTGTTTCTTTGGATTCTAATATCTC-TTTTTCCACCTCCAGAAAGTATCTGT----------CAACATTG-------GTGGGTAACAGTTCATAAAGTGCATCGCTTAGCAATCTTCCTGA-----CAAAATGACAC----------------------------GTTTTAAAATTACAGGCTGTTCATTATTTCCATCACAATGCAAGCATAATTC-TAATCCAGGAGAAGCTATTGTCATTTAAGCTCATCTTCTGAGAAAAATG-------TTTT--TCTGAAAATTCCTAGAAACTAATTTATCCCTCTC-TAAACAAACACATTCTGCTTTTGGGTGG------CCGGAAGCTGCAG-CAACGTCCTAACACT-GGACACAGTGGG-GC-TTGGGGCAGTATCCAGCCTTCATTGCACACAATTCTTATTCTCTAAACACAGCTGCTCCCAAGGTCCACACGTGTGGAGGCGAGTACTGAAGCACCACACTCACACATCTATTCCATGCATACATAGAAATTACCTTC------AAAGAAGCTTCCTTCTTTCATTCCCTATCCTGCT----AACAGCCCACACTGTCATAGTTGATTTATGAAGAAGTTAAAATTTATTTGTGAACTCAGGATGTTGTTTTACAGCGTTGCGTGTGTTCTCTCATTTACGT---ATGCGTCGCGGTTGGAAATGTTATCCACGTGCCGTGCATCGAGGTGGAGGT--TTGCTGGATCTGTCTGTGGCTATTTTTTTTCCATGTTTTTCTCACTCAAGCAAAGTCTGTTA-GTGGAGACATGCGCTGGGGGATGGGGGGAGGACAGATAAATCAAGAGGATAGGGATTAGGATCCAATCCTCAATGCACAGGGCTTAGTTCAAAATCTAAGCTGTTTGTGTAGTAAGTAGCCAAA-----TGGGAAAGACTCCTTCATTTTGAATTTG-ATGAGAATGGGCTTGGAAATCCACGTCCACCGGCTTGCA------TGGAAGAGGATCCAGCCTCTTCCCACTCGTTCGACATTAAATTTCTG-AGGAAAGTTCTGACATTTTTAGTTCCCTACA-TTCCCTAAGACTCCCATCCA---GCCCCTGGTGCTACCGAAGGGAGTTTGGGAAAGC-------AGTTCCTTAGCTTGGATATGTAT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223890592 1361 - 227556264 AAACCCTGCAACCTTGCCAGTGAGAA--------AGAGGTTGAAAGTCCTGTTGGCTATTAGCTGA----GGCT--AAGCCGTCTGCTGCCACCGTCCCTGGGGCCTCCATGCTGCCACCGGGGT-GTGTGGCCCAGCTGTGCCCCCACTGGAGGACACTCGTCAGTGCCACCACACGGGAG---TCTGGGCGGGGAGGAAAGGC--ACACAGCCC---ACTTTTCTCTGCACCAAATGAAACCAAGCTGGGTGTTCAGTGCCACTGATGCAA---GTAAATG-GGTCTCAGAT--TTTGGGGG-----------GGCT--GGGGGGCAGGCAGTA--GACACAGTGTTTCTTTGGATTCTAATATCTC-TTTTTCCACCTCCAGAAAGTATCTGT----------CAACATTG-------GTGGGTAACAGCTCATAAAGTGCATCGCTTAGCAATCTTCCTGA-----CAAAATGACAC----------------------------ATTTTAAAATTACAGGCTGTTCATTATTTCCATCACAATGCAAGCATAATTC-TAATCCAGGAGAAGCTATTGTCATTTAAGCTCATCTTCTGAGAAAAATG-------TTTT--TCTGAAAATTCCTAGAAACTAATTTATCCCTCTC-TAAACAAACACATTCTGCTTTTGGGTGG------CCGGAAGCTGCAG-CAACGTCCTAACACT-GGACACAGTGGG-GC-TTGGGGCAGTATCCAGCCTTCATTGCACACAATTCTTATTCTCTAAACACAGCTGCTCCCAAGGTCCACACGTGTGGAGGCGAGTACTGAAGCACCACACTCACACATCTATTCCATGCATACATAGAAATTACCTTC------AAAGAAGCTTCCTTCTTTCATTCCCTATCCTGCT----AACAGCCCACACTGTCATAGTTGATTTATGAAGAAGTTAAAATTTATTTGTGAACTCAGGATGTTGTTTTACAGCGTTGCGTGTGTTCTCTCATTTACGT---ATGCGTCGCGGTTGGAAATGTTATCCACGTGCCGTGCATCGAGGTGGAGGT--TTGCTGGATCTGTCTGTGGCTTTTTTTTTTCCATGTTTTTCTCACTCAAGCAAAGTCTGTTA-GTGGAGACATGCGCTGGGGGATGGGGGGAGGACAGATAAATCAAGAGGATAGGGATTAGGATCCAATCCTCAATGCACAGGGCTTAGTTCAAAATCTAAGCTGTTTGTGTAGTAAGTAGCCAAA-----TGGGAAAGACCCCTTCATTTTGAATTTG-ATGAGAATGGGCTTGGAAATCCACGTCCACCGGCTTGCA------TGGAAGAGGATCCAGCCTCTTCCCACTCGTTCGACATTAAATTTCTG-AGGAAAGTTCTGACATTTTTAGTTCCCTACA-TTCCCTAAGACTCCCATCCA---GCCCCTGGTGCTACCGAAGGGAGTTTGGGAAAGCAGCCAAGAGTTCCTTAGCTTGGATATGTAT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16935972 1367 - 220367699 AAACCCTGAAACCTTGCCAGTGAGAA--------AGAGGTTGAAAGTCCTGTTGGCTCTTAGCTGA----GGCT--AAGCCGTCTGCTGCCGCCGTCCCTGGGGCCTCCATGCTGCCACCGGGGT-GTGTGGCCCAGCTGTGCCCCCACTGGAGGACACTCTTCAGTGCCACCACACAGGAG---TCTGGGCGGGGAGGAAAGGC--ACACAGCCC---ACTTTTCTCTGCACCAAATGAAACCAAGCT-GGTGTTCAGTGCCACTGATGCAA---GTAAATG-GGTCTCAGAT--TTTggggg-----------ggct--ggggggCAGGCGGTA--GACATAGTGTTGCTTTGGATTCTAATATCTC-TTTTTCCACCTCCAGAAAGTATCTGT----------CAACATTG-------GTGGGTAACAGCTCATAAAGTGCATCACTTAGCAATCTTCCTGA-----caaaatgacac----------------------------attttaaaattacaggcTGTTCATTATTTCCATCACAATGCAAGCATAATTC-TAATCCAGGAGAAGCTATTGTCATTTAAGCTCATCTtctgagaaaaatg-------tttt--tctgaaaattcCTAGAAACTAATTTATCCCTCCC-TAAACAAACACATTCTGCTTTTGGGTGG------CCGGAAGCTGCAG-CAACGTCCTAACACT-GGACACAGTGGG-GC-TTGGGGCAGTATCCAGCCCTCATTGCATACAATTCTTATTCTCTAAACACAGCTGCTCCCAAGGTCCACATGTGTGGAGGCGAGTACTGAAGCACCACACTCACACATCTATTCCATGCATACATAGAAATTACCTTCAACACTAAAGAagcttccttctttcattccctATCCTGCT----AACAGCCCACACTGTCATAGTTGATTTATGaagaagttaaaatttatttgtgaaCTCAGGATGTTGTTTTACAGCGTTGCGTGTGTTCTCTCATTTACGT---ATGCGTCGCGGTTGGAAATGTTATCCACGTGCCGTGCATCGAGGTGGAGGT--TTGCTGGATCTGTCTgtggctattttttttccatgtttttctcaCTCAAGCAAAGTCTGTTA-GTGGAGACATGtgctgggggatggggggaggaCAGATAAATCAAGAGGATAGGGATTAGGATCCAATCCTCAATGCACAGGGCTTAGTTCAAAATCTAAGCTGTTTGTGTAGTAAGTAGCCAAA-----TGGGAAAGACCCCTTCATTTTGAATTTG-ATGAGAATGGGCTTGGAAATCCACGTCCACCGGCTTGCA------TGGAAGAGGATCCAGCCTCTTCCCACTCGTTCGACATTAAATTTCTG-AGGAAAGTTCTGACATTTTTAGTTCCCTACATTTCCCTAAGACTCCCATCCA---GCCCCTAGTGCTACCGAAGGGGGTTTGGGAAAGCAGCCAAGAGTTCCTTAGCTTGGATATATAt i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82738391 1364 + 85787240 AAACCCTGAAACCTTGCCAGTGAGAA--------AGAGGTTGAAAGTCCTGTTGGCTATTAGCTGA----GGCT--AAGCCGTCTGCTGCCGCCGTCCCTGGGGCCTCCATGCTGCCACCGGGGT-GTGTGGCCCAGCTCTGCCCCCACTGGAGGACACTCTTCAGTGCCACCACACGGGAG---TCTGGGCGGGGAGGAAAGGC--ACACAGCCC---ACTTTTCTCTGCACCAAATGAAACCAAGCTGGGTGTTCTGTGTCACTGATGCAA---GTAAATG-GGTCTCAGAT--TTTGGGGG-----------GGTT-AGGGGGGCAGGCGGTA--GACATAGTGTTTCTTTGGATTCTAATATCTC-TTTTTCCACCTCCAGAAAGTGTCTGT----------CAACATTG-------GTGGGTAACAGCTCATAAAGTGCATCACTTAGCAATCTTCCTGA-----CAAAATGACAC----------------------------ATTTTAAAATTACAGGCTGTTCATTATTTCCACCATAATGCAAGCATAATTC-TAATCCAGGAGACACTATTGTCATTTAAACTCATCTTCTGAGAAAAATG-------TTTT--TCTGAAAATTCCTAGAAACTAACTTATCACTCTC-TAAACAAACACATTCTGCTTTTGGGTGG------CCGGAAGCTGCAG-TAACGTCCTAACGCTGGGACACAGTGGG-GC-TTGGGGCAGCATCCAGCCCTCATTGCATACAATTCCTGTTCTCTAAACATAGCTGCTCCCAAGGTCCACACGTGTGGAGGCGAGTACTGAAGCACCATACTCACACATCTATTCCATGCATACATAGAAATTACCTTCAACACTAAAGAAGCTTCCTTCTTTCATTCCGTATCCTGCT----AACAGCCCACACTGTCATAGTTGATTTATGAAGAAGTTAAAATTTATTTGTGAACTCAGGATGTTGTTTTACAGCGTTGCGTGTGTTCTCTCATTTATGT---ATGCTTTGCGGTTGGAAATGTTATCCATGTGCCGTGCATCGAGGTGGAGGT--TTGCTGGATCTGTCTGTGGC-----TTTTTCCATGTTTTTCTCACTCAAGCAAAGTCTGTTA-GTGGAGACATGCGCTGGGGGATGGGGGAAGGACAGATAAATCAAGAGGATAGGGATTAGGATCCAATCCTCAATGCACAGGGCTTAGTTCAAAATCTAAGCTGTTTGTGTAGTAAGTAGCCAAA-----TGGGAAAGATTCCTTCATTTTGAATTTG-ATGAGAATGGGCTTAGAAATCCACGCCCACTGGATTGCA------TGGAAGAGGATCCAGCCTCTTCCTACTCGTTCAACATTAAATTTCTG-AGGAAAGTTCTGACATTTTTAGTTCCCTACATTTCCCTAAGACTCCCATCCA---GCCCCTGGTGCTACCGAAGGGGGTTTGGGAAAGCAGCCAG-AGTTCCTTAGCTTGGATATATAT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14456181 1344 - 49578535 AAACCCTGAGACCTTGCCAGTGAGAAACAGGTTGACAGGTTGAAAGTCCTGCTCGCTATTAGTTGA----GGCT--AAGCCGTCTGCTGCCACTGTCCCT-GGGCCTCCAGGCTGCCGCCAGGGT-GTGAGGCCCAGCTGTCCTCTCACTGAGGGACACTCTTCAATGCCACCACATGGGAGTCTTCTGGGTGGGGTGGAAAGGCCAGTGCAGCCC---ACTTTTCTCTGCGCCAAAGGAAAC--AGCTGGGTGTTCAGTGTGGCTGATGCAT---GTAAATG-GCTCTAAAAT--TCAG--GG-----------GGCT-AAGGGGACAGGCGGTAGGGATGCAGCATTTCTTTGGATTCTAATGTCTCTTTTTTCCACCTCCAGAAAGTATCGGT----------CTACATTG-------GTGGGTAACAACTCATAAAGTGTATCACTTAGCAATCTTCCTGA-----CAAAGGGACAC----------------------------ATTTTAAAATTACAGCCTGTTCATGATTTCCATAATCATACAAGCATAATTC-CAATCCAGGAGAAGTGACTGC------AGC------------AAAAATG-----CTTTTT--CCTAAAAATTCCTAGAAGCTAATTTATCCCTCCC-TAAACAAGCACATTCCGCTTTTGGA-GGCCCTACCTAGAACCTGCAG-TGATGTCACAATATT-GGACATAGTGGG-GC-GCAGGGCTGTATGGAGCCTTCGCTG-ATGCAATCCACATTCTCTAAACACAGTGGTTCCCAGTATCCACATGTGTGGAGGCATGTGCTGAAATGCCACACT--CACATCTATGTCATGCACACACAGCAATTACCTTCAGCACTGACAAAGCCGCCTCCTCTCATTCGCCAAGCTGCT----GACAGCCCGCATCGTCATACTCGATTTCTGAAGAAGTTATAATTTATGTGTAAATGCAGGATGTTGTCCCACAGCACTGCCTGTGTTC-----TTTGTTT---ACACGACACGGTTGGAAATGCTACCCAAGCGCTACGCGTTGAAGTGGAGGT--TTGCTAGATCTGTCTGTGGCTATC-TTTTTCTATGTTTTTCTCACTCTAGCAAAGTCTGTTC-ATGGAGTCATGGCCTGGGGGATAGGGA-AGGATAGATAAATCAAGAGAATAAGGATTAGGGTCCAATCTTCAAGGTACAGGGCTGAGTTCAAAATCTAAGCTGTTTCTGTAGTAAGTAGCTGGA-----TAGGAAAGATCCCTTCATTCTGAATTTG-ATGAGAATGGGCTTGGAAATCCACTCCCACAGGCTTGTG------TGGAAGAGGATCCAACCTCTTCCTCCTGGTTCAACATTAAATTTCTG-AGGAAAGTGCTGACAGTATTAGTTCCCTACATTTACCCACAACTCCCATCCT---GCCCCTGGGGCTGCTGAAGGGAGTTTGGGAAAGC---------------AACGTGGATATAAAC i calJac3.chr19 C 0 C 0 s mm10.chr1 178936544 1292 + 195471971 AAAACCAAAGCCAGGGCCCATTAGAA--------ACATGTTGAAAATCCTGTGTTCTATGAGTTGATGCTGACT--AAGCCATCCACTGTCATCGTCCTTCCTGCCTTCCTGCCACTGCCTAG---ATTTGGCCCTGATTTCCACATT-GAAAGGGGTGTGCTTAGTGCTAACACATGTGTG---GCTCTG------GGAGAGGCCGACACAGCCCGCTGCTCTTCTCTGAGCCAAGTTAAAC--AGCTGAG-GGCAAGTTTCACAGACATGATTGGTTAATG-GTTCTAATTT--TTTT-----------------TT--------CAAGTGATAGAAACACAGCATTCTTGTACAGT---ATATAGA-TTACCACTCTCCTGGACAACATCAGTAACCTCTTTACAACATTACGAAGCCATTTGTAAAAACACATAAATTGTATTGTTTAGCCATCTTCCTGATGTGTCAGAAT---AT----------------------------ATTTCTAAGTGACAAACTCTGAATTATTTCCATAAGAATAAAAGCAGGATTA-TAACCAAGGAAA--CTATCTTAAATCCAATGTATCCTCTCAAAAATAAGGGGGGAGGGGT--GGTGAAAACATCTAAGAGTTAATTTATCCATTCC-TAAACAAACACATTCTACTTTGGGGTGGCCCTTTGCAAAACCTGAGG-TGATGTCACAATGTT-GGACATAGTGTG-ACACTGTGGGAGGGGCGAAGCTGAA--------------TATTCTCCACACACAACAATTACTGGTGTC-----ATGTGAAAGTGAGCACTCCAATCCC-----------TGGGTTTTATGTCCACTTAG-AATGACCTTG---CCCAAAGGAGTCTCCTGCATCCATTCCCCACACCGCC----AGCCTCCTACACTGCCAGGCTTGACTTAAGGAGACATT---ATTGATTTGTAACCTCAGAATGCTGTCCTGTAACACCGCTTATGTTCCTAGATCTATTT---CTGCACTGTGGTCAGGAACGCCCTCCACACGTCCTGAGTTGAAGTGTGTGTGCTTGCTCGGTCTGTGTTTTGTCTTT-TTTCTTC-TGTTTTTCTTACTCCAGCGATGTCTATTA-GCAGAGACATGGGCCAGGGAA-----GGGTGATGGATACAGCCAGGGG--------TGGGATATCAGCCTCAAAGTGCAGAGCTTTGCTCTGAATCTCAGC------------AGGCAGCCAAAGGGACTGAGACAAAGCTCTTCCTTTCAAGTTGGCATGGCAATCAACTTGGAAATCAGGTTCCCCGGGCCTTTGCCTTCCTAACAAAGGATCCAGCCTCCTCCAACTGGGTCTCCACTCAGCCCCTGTAGAAAAGTGCTGACAGTATTAAGT-TCTACTCTTCCCTAAGACCCC--------------------------AGG---------------------AGGTCCTCACCGTGCATAGATGT i mm10.chr1 I 1 C 0 s canFam3.chr7 36526693 1296 + 80974532 AAATCCTGAAACCCTGTCAGTAAGAA--------ACAGGTTGAAAGTCTTGTCA--CAACAGCCAA----TGCTCAAAACTGCCTGGTCCCACTGTCCCCAGGGCCTCCCCACCACTGCCCAGGCAGTGCAGCCAGGCC-TTCGGCGA-CAGAGGCCACAGCTCACCACTGCCACACGGGAG---ACCTGGCTGCCGTGG-------ATGAAGCCC---ACTCCTCTCTCTGCCCAGTGAGCCAAAGCCACATGCCCAGCTCCAATGACACTG---CCAAGAGTGGTCTAACATGGTTTGGTGGGTGGGGGTGGTGGTC--AGGGAGCAGACGGTA-AAATACTTCGTTCCTTTGGATTATAATAGCTC-TTTTTCCTCCTGCAGCAAATACCTGT----------TGGCATTT-------GTGGGTAAGAACTCGCAAAGCGTGTCACTTAGCAATTTCCCCGa-----cacacacacacacacacacgcacacacGTGTGTATGTATATTTTATAACTACAAACTGTTC---ATTTCCA----GATAAAAACCTAGTTC-CAATCCAGCAGATGCTCTTGTAACTCAAGCCCACCTTCTCAGAAAAGT--------TTTTGATCCGA----TCGCAGAAGCTGGTTTACCCACCCCGTAGATGAATACATTCTGCTTTTGGGCAGCCCTCATCAGAACCGGATGCCAATGTCCTCATACC-AGGCATGGAACGTGC-TGGAGGCAGGAGACAGCCTTCAGCGTTCCCAAGGAACACTCTGGAAACCCATTCATGCCCCGTGTCCTTGCACATCGGGATGAACACTGAAATGGGGCCCTCGCATGTCCACG------------------------------------------------TCATTCCCCACACTGCTGACCAACAGCCCACA--GTCCTGTTCAATTTTAGGAAAAGGTAGAATTTATTTGTAAACTCAGGATATTGTTTTGTAGCCTCACCTGTGCTTTATAATTTATGT---ATACATCACGGTTGGAAATGCTTTCCAAGTGTTATGCATTGAAGCCTAGGT-------GAGGGCATCTGTGGCTGTC-CTAGCCC---CTCCTCTCA------TGAGGTCTATAACAGAGACACATGGGCCCCAGA--GGGGGAAAGATAAATAAATCAGGAGGGCA-GGATTAGGATCCAGTCCTCAAGCTATCTGGCTTCGTGCAACATCTAAGCTGTTTCCATAGCGAGTGGCTGAA-----GGGAAAAGGTCCCATCACTTTGAATATG-ATGATAATGGGCTTGGAAATCAGCCTCCACAGGCCTGGG------TGGGA-----------------------TTTCTGCA--AAATTTCTG-TGAAAAATATGGACAGTATGAGGTCCCCAGAGTCCCCTGAGACCCCCACCCACCCACCCCTCAGGT---------------------GCAACCAG-AGTTCTTCACCTTGGATGCATT- i canFam3.chr7 C 0 C 0 a score=971368.000000 s hg38.chr1_KI270759v1_alt 406007 359 + 425601 AGTACCTGTT-----------------TTTTTCCTCTGGAAAAACCAAAGTACTTTAGTGAGTCTTACAAT--------CTTAAGGCATTTTGTCCCCTCA---CTGG-----GTCCC-GAgaggcaggga--ggggct--------------------------------------------aggccttgagctaggagcaaggaca-tgggccgccaggcctggt--tgttactagctgtgcaaccttgggcgagcctcttcgctttgctgggcctcaggttcccgagtggaagactgggggtcagaacagctgcccttctgggagagcatcaagagaa---agtggtataagtgatgggaagtgctttgaagaaatta-aaggtctgtctaggagctgggggtaatcatttacagatgaagaaactgaagtc--tagtcattgac s ponAbe2.chr1 226535389 367 - 229942017 AGTACCTGTT-----------------TTTTTTCTCTGGAAAAACCAAAGTACTTTAGTGAGTCTTACAAC--------CTTAAGGCATTTTGTCCCCTCA---CTGCATTTTGTCCC-GAgaggcaggga--ggggct--------------------------------------------aggccttgagctaggagcaaggacactgggccgccaggcctggttctgttactagctatgcaaccttgggcgagcctcttcgctttactgggcctcaggttcctgagtggaagactgggggtcagaacagctgcccttctgagagagcatcaagagaa---agtggtataagtgatgggaagtgctttgaagaaatta-aaggtctgtctaggagctgggagtaatcatttacagatgaagaaaatgaagtc--tagtcattgat i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140426151 351 - 143122389 AGTAACTG-T-----------------TTTTTCCTCTGGAAAAACCAAAGTACTTTAGTGAGTCTTACAAC--------CTTAAGGCATTTTGTCCCCTCA---CTGG-----GTCCC-----------GA--GGGGCT--------------------------------------------AGgccttgagctaggagcaaggacactgggccgccaggcctggttctgttactagctatgcaaccttgggcaagcctcttcgctttgctgggcctcaggttcccgagtggaagactgggggtcagaacagctgcccttctgggaaagcatcaagagaa---agtggtgtaagtgacgggaactgctttgaagaaatta-aaggtctgtctaggagctgggggtaatcatttacagatgaagaaactgaagtc--tagtcattgat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17128000 422 - 229590362 AGTACCTGTTTTTCTTTTGGTTTTTTGTTTTTCCTCTGGAAAAACCAAAGCACTTTAGTGAGTCTTACAAC--------CTTAAGGCATTTTGTCCCCTCA---CTGG-----ATCCCCAAGAGGCAGGGA--GGGGCT-GGGTCAGTAATCTCATTTGAGAGgtagctaaacctaggagcaaaggccttgagctaggagcaaggacactgggccgcca-gcttggttgtgttactagctatgcaaccttgggcgagcctcttcactttgctgggcctcaggttcccgagtggaagaccaggggtgagaacagctgcccttctgggagagcataaagagaa---agtggtataagtgatgggaagtgcttcgaagacttta-aagctctgtgtaggagctgggggtaatcatttaccgatgaagaaactgaagtc--tagtcattgat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223891953 422 - 227556264 AGTACCTGTTTTTCTTTTGGTTTTTTGTTTTTCCTCTGGAAAAACCAAAGCACTTTAGTGAGTCTTACAAC--------CTTAAGGCATTTTGTCCCCTCA---CTGG-----ATCCCCAAGAGGCAGGGA--GGGGCT-GGGTCAGTAATCTCATTTgagaggtagctaaacctaggagcaaaggccttgagctaggagcaaggacactgggccgcca-gcttggttgtgttactagctatgcaaccttgggcgagcctcttcactttgctgggcctcaggttcccgagtggaagaccaggggtgagaacagctgcccttctgggagagcataaagagaa---agtggtataagtgatgggaagtgcttcgaagacttta-aagctctgtgtaggagctgggggtaatcatttaccgatgaagaaactgaagtc--tagtcattgat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16937339 423 - 220367699 agtacctgtttttcttttggttttttgtttttcctctggaAAAACCAAAGCACTTTAGTGAGTCTTACAAC--------CTTAAGGCATTTTGTCCCCTCA---CTGG-----ATCCCCAAGAGGCAGGGA--GGGGCTAGGGTCAGTAATCTCATTTGAGAGGTAGCTAAACCTAGGAGCAAAGGCCTTGAGCTAGGAGCAACGACACTGGGCCGCCA-GCTTGGTTGTGTTACTAGCTATGCAACCTTGGGCGAGCCTCTTCACTTTGCTGGTCCTCAGGTTCCCGAGTGGAAGAGCAGGGGTGAGAACAGCTGCCCTTCTGGGAGAGCATAAAGAGAA---AGTGGTATAAGTGATGGGAAGTGCTTCGAAGACTTTA-AAGCTCTGTGTAGGAGCTGGGGGTAATCATTTAccgatgaagaaactgaagtc--taGTCATTGAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82739755 423 + 85787240 AGTACCTATTTTTCTTTTGGTTTTTTGTTTTTCCTCTGGAAAAACCAAAGCACTTTAGTGAGTCTTACAAC--------CTTAAGGCATTTTGTCCCCTCA---CTGG-----ATCCCCAAGAGGCAGGGA--GGGGCTAGGGTCAGTAATCTCATTTGAGAGGTAGCTAAACCTaggagcaaaggccttgagctaggagcaaggacactgggccgcca-gcttggttgtgttactagctatgcaaccttgggcgagcctcttcactttgctgggcctcaggttcccgagtggaagaccaggggtgagaacagctgcccttctgggagagcataaagagaa---agtggtataagcgatgggaagtgctttgaagacttta-aagctctgtgtaggagctgggggtaatcatttaccgatgaagaaactgaagtc--tagtcattgat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14457525 400 - 49578535 AGTACCTGTT--------------TTGCTTCTTTTCTGGAAAAAACAAAGCACTTTAGTGAGTCTGACAAC--------CTTAAGGCATTCTGTCCCCTC----CTGG-----ATCCCTGAGTATCAA------------GGGTCAGTAGTCTTATTTGAGAGGTGGCTGAACTTaggagcaaaagccttgagctaggaacaaggaaactgggtcaccaggcctggttctgtcactagctctgcaacctggggcgagtgtcttcactttgctgggcctcaggttcccaagtggaagac-aggggtcagaacagctgcccttctaggataacataaagagaa---aatggtgtaagtgacgggaagtgctttgaagaAATTG-AAGCTCTGCCTCGGAGCTGGGGACAGTCAtttacagatgaagaaactgaagtcaggagccactgac i calJac3.chr19 C 0 C 0 s mm10.chr1 178937836 390 + 195471971 GCCATCTGTT-------------------------CTTGAGAAACCAAAGCACTTTAGTGAGTCTTACAACCCATAATACTTACAGTATT-TGCCCTCTGAAAGGTGG-----------AAGGGGCTTGGGCTAGGTCT--------------CATTTGAGAGGCAACTAGAGCTAGGAGGAAAAGCctggagctagacagcagggagctaagccac---atct-gcaccaccacaagctatg-aacctcgggtaggttgctgaattttgctgccccccC--CCCCTAGACAGTTGTGGGGAGGTCCTAACAGCTACCCTCCTGGGATGGCAGAAAAGGAAGGGAATAATATAACTGGTGGGACACGCTTTGAAGAAATCAGAAGCTCTCTCCAGAGGGGAGGGAGGATCATGTATAGATGAAGAAGTTGACATCCGTACTCACTGCC i mm10.chr1 C 0 C 0 s canFam3.chr7 36527989 358 + 80974532 AGTACCTGTT---------------------TGTTCTGGAGAAACCAAAGCACTTTAGTGGATTTTACAACCTGTAATACTTAAGGCATCAGGTCCTCTC----CTCA-----GTCT--GAGAGGTGGAGA--GGGGCTGGGGTCAGTAGTCTCATTGGAGAAGGAGCTC-------------TAGCCTGGAGCCAGGGGTAAGGACGCTGGGCCAG---GCCTGGTTCCCTCCCTCGCTATGCAACTTGGG------------------------------CTCCCCAGGGGGAGATTGGGGTTCAAAACAGCTGCCCTTCTGGGACAGTGTAGAGAGAA---AGTGCTATCAGTGATGGGAAGTGCTTTGACGA----A-GTGCTCCATGCGGGAGCTGGGGATGATCCTTTAGAGATGAAGAAAC--AAGTCAAGAGGCAGCGAT i canFam3.chr7 C 0 C 0 e panTro4.chr1 225164163 0 + 228333871 C a score=587030.000000 s hg38.chr1_KI270759v1_alt 406366 179 + 425601 tggcccgagttcacagagtggttttatagcaaaacagggacttgagtccagCTTATTGGATTCTTCCCATCAGAT-CATATTGCACCAGGTATGTGTAGACATGAACACATA--CCATTCCTCTAAG---------------GTGTGTG----------------------------------------TACATACACGGATGTGTGTGTACAGGAGGTACCTGACATGGTGAAAGG s panTro4.chr1 225164163 179 + 228333871 tggcccgagttcacagagtggttttatagcaaaacagggacttgagtccagCTTATTGGATTCTTCCCATTAGAT-CATACTGCACCAGGTATGTGTAGACATGAACACATA--TCATTCCTCTAAG---------------GTGTGTG----------------------------------------TACATACACGGATGTGTGTGTACAGGAGGTACCTGACATGGTGAAAGG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226535756 179 - 229942017 tggcccgagttcacagagtggttttatagcaaaacggggacttgagtccagcttattggattcttcccattagat-catattgcACCAGGTATGTGTAGACATGAACAGATA--TCATTCCTCTAAG---------------GTGTGTG----------------------------------------TACATACATGGATGTGTGTGTACAGGAGGTACCtgacatggtgaaaag i ponAbe2.chr1 C 0 I 1 s nomLeu3.chr5 140426502 179 - 143122389 tggcccgagttcacagagtggttttatagcaaaatggggacttgagtccagcttattggattcttcccattagat-catattgcACCAGGTATGTGTAGACATGAACAGATA--TCATTCCTCTAAG---------------GTGTGTG----------------------------------------TACATACATGGATGTGTGTGTACAGGAGGTACCTGACATGgtgaaaag i nomLeu3.chr5 C 0 I 1 s rheMac3.chr1 17128422 179 - 229590362 tggcccgagttcacagagtggttttatagcaaaacggggacttgagtccagcttgttggattcttcccattagat-catattgcACCAGGCATACGTGGACATGAACAGATA--TCATTCCTCTAAG---------------GTATGTG----------------------------------------TACATACATGGATGTGTGTGTACAGGAGATACCTGATGTGGTGAAAAG i rheMac3.chr1 C 0 I 1 s macFas5.chr1 223892375 179 - 227556264 tggcccgagttcacagagtggttttatagcaaaacggggacttgagtccagCTTGTTGGATTCTTCCCATTAGAT-CATATTGCACCAGGCATACGTGGACATGAACAGATA--TCATTCCTCTAAG---------------GTGTGTG----------------------------------------TACATACATGGATGTGTGTGTACAGGAGATACCtgatgtggtgaaaag i macFas5.chr1 C 0 I 1 s papAnu2.chr1 16937762 219 - 220367699 TGGCCCGAGTTCACAGAGTGGTTTTATAGCAAAACAGGGACTTGAGTCCAGCTTGTTGGATTCTTCCCATTAGAT-CATATTGCACCAGGCATACGTGGACATGAACAGATA--CCATTCCTCTAAG---------------gtgtgtgtacatacacggatgtgtgtgcacatacacggatgtgtgcatacatacacggatgtgtgtgcacaGGAGATACCTGACGTGGTAAAAAG i papAnu2.chr1 C 0 I 1 s chlSab2.chr25 82740178 177 + 85787240 tggcctgagttcacagagtggttttatagcaaaacggggacttgagtccagCTTGTTGGATTTTTCCCATTAGAC-CATATTGCACCAGGCATACGTGGACATGAACAGATA--TCATTCCTCTCAG---------------ATGTGTG----------------------------------------TGCATACACGGATGTGTGT--ACAGGAGGTACCTGACGTGGTGAAAAG i chlSab2.chr25 C 0 I 1 s calJac3.chr19 14457925 179 - 49578535 cggcccaagtt--cagagtggtttcatagccaaactgggacctgagtccagctgcccggattcttcccattcgat-catgctgcaccAGGTCTGTGCCGACATGAACACACACGTCATTCGTCTAAC---------------GTGTGTG----------------------------------------CACACACATGGGTGCGTGTGTACAGGAGGCACTTGACATGGAGAAAGA i calJac3.chr19 C 0 C 0 s mm10.chr1 178938226 161 + 195471971 TGGCCAG-GTTCACA-----GTCTCACAGCAGAACTGGGACATGAGCCCCGCCACCTGGAGTGTCCCTGATAGAG-CACCTTTCACCCAGAGTGTGT--ACATGAACACAGG--CTGCTTCTCTGTGCCA------------GTGTGTG----------------------------------------CACATATGTGGGTGTGTCTGTATGGGGGGTGTGTG------------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36528347 214 + 80974532 TGGCCCGAGTCCGCAGAATAGTTTTTAGGGTGGAACGTGACCCGAGTCCAGAATCTCGGGCTCTTCCCAGGAGGTGCTGGGTGCACCAGGTGTGTGAACACGTGGACGCACA--TCATGCCCCTGTACTGgcgtgcatgtgcgtgtgtg------------tgcgtgtgtgtgcgCCCGG---------GGCGTAGATGGATGCATGTGTACAGAAGGTATGtggcaggatggaaga i canFam3.chr7 C 0 C 0 a score=21588.000000 s hg38.chr1_KI270759v1_alt 406545 29 + 425601 CCAtaggacagaaaacctgagttctaatt- s rheMac3.chr1 17128602 28 - 229590362 CCATAGGAcagcaaacctgagttctcat-- i rheMac3.chr1 I 1 C 0 s macFas5.chr1 223892555 28 - 227556264 ccataggacagcaaacctgagttctcat-- i macFas5.chr1 I 1 C 0 s papAnu2.chr1 16937982 28 - 220367699 CCATAGGACAGCAAACCTGAGTTCTCAT-- i papAnu2.chr1 I 1 C 0 s chlSab2.chr25 82740356 28 + 85787240 CCGtaggacagcaaacctgagttctcat-- i chlSab2.chr25 I 1 C 0 s mm10.chr1 178938387 13 + 195471971 --------Cagcacagatgaa--------- i mm10.chr1 C 0 C 0 s canFam3.chr7 36528561 29 + 80974532 gcagagggcagaaaataggacttctgat-c i canFam3.chr7 C 0 C 0 e calJac3.chr19 14458104 0 - 49578535 C e nomLeu3.chr5 140426681 1 - 143122389 I e ponAbe2.chr1 226535935 1 - 229942017 I e panTro4.chr1 225164342 0 + 228333871 C a score=2373.000000 s hg38.chr1_KI270759v1_alt 406574 35 + 425601 ccagctttgccaGTCGTCCCGTCCGTGATATATTC s macFas5.chr1 223892583 35 - 227556264 ccagctttgccagtcatcctgtccgggatatactt i macFas5.chr1 C 0 C 0 s canFam3.chr7 36528590 21 + 80974532 ccagtggcgtcaggagtcctg-------------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178938400 0 + 195471971 C e calJac3.chr19 14458104 0 - 49578535 C e rheMac3.chr1 17128630 0 - 229590362 C e chlSab2.chr25 82740384 0 + 85787240 C e papAnu2.chr1 16938010 0 - 220367699 C e nomLeu3.chr5 140426681 1 - 143122389 I e ponAbe2.chr1 226535935 1 - 229942017 I e panTro4.chr1 225164342 0 + 228333871 C a score=-570.000000 s hg38.chr1_KI270759v1_alt 406609 62 + 425601 CAtaggacagaaaacctgagttctaattccagctttgccaGTCATCCTGTCCGTGATATATT s mm10.chr1 178938400 55 + 195471971 cgtaggacagaaactccgagtcctaattcc-tttctaacagtcgacctgtctgtgg------ i mm10.chr1 C 0 C 0 s canFam3.chr7 36528611 9 + 80974532 -----------------------------------------------tggccgtgg------ i canFam3.chr7 C 0 C 0 e calJac3.chr19 14458104 0 - 49578535 C e rheMac3.chr1 17128630 0 - 229590362 C e chlSab2.chr25 82740384 0 + 85787240 C e papAnu2.chr1 16938010 0 - 220367699 C e macFas5.chr1 223892618 0 - 227556264 C e nomLeu3.chr5 140426681 1 - 143122389 I e ponAbe2.chr1 226535935 1 - 229942017 I e panTro4.chr1 225164342 0 + 228333871 C a score=600.000000 s hg38.chr1_KI270759v1_alt 406671 1 + 425601 C s panTro4.chr1 225164342 1 + 228333871 C i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226535936 1 - 229942017 c i ponAbe2.chr1 I 1 C 0 s nomLeu3.chr5 140426682 1 - 143122389 c i nomLeu3.chr5 I 1 C 0 e mm10.chr1 178938455 0 + 195471971 C e canFam3.chr7 36528620 0 + 80974532 C e calJac3.chr19 14458104 0 - 49578535 C e rheMac3.chr1 17128630 0 - 229590362 C e chlSab2.chr25 82740384 0 + 85787240 C e papAnu2.chr1 16938010 0 - 220367699 C e macFas5.chr1 223892618 0 - 227556264 C a score=21742.000000 s hg38.chr1_KI270759v1_alt 406672 28 + 425601 CAtaggacagaaaacctgagttctaatt s panTro4.chr1 225164343 28 + 228333871 CAtaggacagaaaacctgagttctaatt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226535937 28 - 229942017 cataggacagaaaacctgaattctaatt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140426683 28 - 143122389 cataggacagaaaacctgagttctaatt i nomLeu3.chr5 C 0 C 0 s calJac3.chr19 14458104 28 - 49578535 CACAGGACCgaacacctgagttctggct i calJac3.chr19 C 0 C 0 s mm10.chr1 178938455 16 + 195471971 cctgggacacacaacc------------ i mm10.chr1 C 0 C 0 e canFam3.chr7 36528620 0 + 80974532 C e rheMac3.chr1 17128630 0 - 229590362 C e chlSab2.chr25 82740384 0 + 85787240 C e papAnu2.chr1 16938010 0 - 220367699 C e macFas5.chr1 223892618 0 - 227556264 C a score=56573.000000 s hg38.chr1_KI270759v1_alt 406700 35 + 425601 ccagctttgccagtcgtcccgtccgtgatatatta s panTro4.chr1 225164371 35 + 228333871 ccggctttgccagtcgtcccgtccgtgatatatta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226535965 35 - 229942017 ccaggtttgccagtcgtcctgtccgggatatatta i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140426711 35 - 143122389 ccagctttgccagttgtcctgtccgggatatatta i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17128630 35 - 229590362 ccagctttgccagtcatcctgtccgggatatactt i rheMac3.chr1 C 0 C 0 s papAnu2.chr1 16938010 35 - 220367699 CCAGCTTTGCCAGTCATCCTGTCCGGGATATACCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82740384 35 + 85787240 ccagctttgccagtcgtgctgtccgggaaatactt i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14458132 35 - 49578535 ccagctttgactcaggtcctggccgggacccagtt i calJac3.chr19 C 0 C 0 s canFam3.chr7 36528620 8 + 80974532 --------------------atccgtga------- i canFam3.chr7 C 0 C 0 e mm10.chr1 178938471 0 + 195471971 C e macFas5.chr1 223892618 0 - 227556264 C a score=5369113.000000 s hg38.chr1_KI270759v1_alt 406735 1538 + 425601 cctaactcctccagaactcag-ttttctaacctataaaatgaagacattgtgctagatgatctttgtggttccttcaagctctggatctctaattccatgattAGTA----ATGTATGTATGTGTATATAAATATGCTTATCTGTAGAAATGGGCCCATTTGAAAAGTGGAGACAAGGTCTGCCCAGGTGCATTTA-T-TGTGCCAGAAACAGTGAATTCCTAAATAAGTTCATAAAATCTTGTTTTACAATTCAATGG--TAGTG---CTTAATGTTACTGTCTGAAATCCACTG-TTTAACCAGATGGAAGACT--GGGGCCATTCAAAACATTA-----TTAGTTCACAAGTGTTTGCTGTTAAAATGCTTC-AATAAA--ACTCATTTGTT--AAAGTCAGAAAT-TCAACTCTTCTGTACTTGGGCAGGT-CCCAGCAGCCC-CTTGG----CAGGCT-AGTTTTGTGCATGGGCCTTTGCA-AGCTATATAAACGTTAGGTGTTGGCTTGATTATGATAAA--TATGAGCAGGCTCCCTGGAGAACAGTCCAGAAAAAAAGAG----TTATAGTTCTCACAAACTGGTGACATGAATCCATTAAGCTGTGTGGCATTTTCCAGTGTAAAGACATTGTTTGCTGGCTACGATCTCTGACTTTTTGTGGCATATGAGGTGTAAAATGTTGT--CAAAAAAGAATCTGGTGTTTAAAAAAAAA---TCAAACTATGGTGGCATTAAATGTTCACTTTTATTCTACCCAGAGTTGTGAATTC--CTCTATCCAGCTTCTCCTTCTGTACCTCGGGGGAAAGCAATTCAAGAGCTAGGG---GTGGGTGCTTCTCACGGCAGCAACACCTTGGCCCAAGTCTAG-CCCCCAGGCCTCTCAGGACCTCATGGGATGAGGCCTGTCTAGTCGCCCTGTGGAGCTGGCCCCCAACAAGTTCAGCAGCTCAGCCAGGAGTGAGTAGAGGT-GTCAGCTAAGTCCCAGAGTCCCTGGACTTGTTCTGCACACCT-------GAGAGCCAGACGCTGGG--------------GAAAGTGTGGAGAAGCTTGTGTTGATAATGGGATATTTT-------CTGTTGCCCTCCCTCAGTCCAGTGTTTCTGGGGCTTACACAAAATAAGGGAATTTGCAGTCACTGTAGATTGCTCGGGCCTGGATGCATGGGCCTCT----------------------GTTACACTGGTGCTTGGTCTCAGTTATAACTGGGCACATT-CAGGCAAGAAGGCAAAAACAGATCAG-AACTAGAAAAAGGTCTCTC-AGGGTAGCCCCTTCCCTTGAGGACAGTC----TCCCTCCA---------CTGCAGACATTTCCCTCTGAACAGTAATGAGGGACTTTCCTAGATGCTGGTGCCACATTCATCCAATCAACTGAGTGCTCCACACCCCCAGGAGATAGGGCAGGATGGCCACTCAAAGCAAATACAT--------ACTCTTCACTCCTGGCAAGATCCCTCTCTGAGTCCCTGTCTCCTACTGCACCACGCTTGCCTGGACATGCACACCTCCAAGGCTCCCTGCTTTTCTTCTCCCCAAATCCTAGCCAAGACCTTCTTGGGCTCCCTTTGGGTAAACCGA-GCAGAAGCCGTA s panTro4.chr1 225164406 1543 + 228333871 cctaactcctccagaactcag-ttttctaacctataaaatgaagacattgtgctagatgatctttgtggttccttcaagctctggatctctaattccatgattAGTA----ATGTATGTATGTGTATGTAAATATGCTTATCTGTAGAAATGGGCCCATTTGAAAAGTGGAGACAAGGCCTGCCCAAGTGCATTTA-T-TGTGCCAGAAACAGCGAATTCCTAAATAAGTTCATAAAATCTTGTTTTACAATTCAATGG--TAGTG---CTTAATGTTATTGTCTGAAATCCACTG-TTTAACCAGATGGAAGACTCTGGGGCCACTTAAAACATTG-----TTAGTTCACAAGTGTTTGCTGTTAAAATGCTTC-AATAAA--ACTCATTTGTT--AAAGTCAGAAAT-TCAACTCTTCTGTACTTGGGCAGGT-CCCAGCAGCCC-CTTGG----CAGGCT-AGTTTTGTGCATGGGCCTTTGCA-AGCTATATAAACGTTAGGTGTTGGCTTGATTATGATAAA--TATGAGCAGGCTCCCTGGAGAACAGTCCAGAAAAAAAGAG----TTATAGTTCTCACAAACTGGTGACATGAATCCATTAAGCTGTGTGGCATTTTCCAGTGTAAAGACATTGTTTGCTGGCTACGATCTCTGACTTTTTGTGGCATATGAGGTGTAAAATGTTGT--CAAAAAAGAATCTGGTGTTTAAAAAAAAAAAATCAAACTATGGTGGCATTAAATGTTCACTTTTATTCTACCCAGAGTTGTGAATTC--CTCTATCCAGCTTCTCCTTCTGTGCCTTGGGGGAAAGCAGTTCAAGAGCTAGGG---GTGGGTGCTTCTCACGGCAGCAACACCTTGGCCCAAGTCTAG-CCCCCAGGCCTCTCAGGACCTCATGGGATGAGGCCTGTCTAGTCGCCCTGTGGAGCTGGCCCCCAACAAGTTCAGCAGCTCAGCCAGGAGTGAGTAGAGGT-GTCAGCTAAGTCCCAGAGTCCCTGGACTTGTTCTGCACGCCT-------GAGAGCCAGACGCTGGG--------------GAAAGTGTGGAGAAGCTTGTGTTGATAATGGGATATTTT-------CTGTTGCCCTCCCTCAGTCCAGTGTTTCTGGGGCTTACACAAAATAAGGGAATTTGCAGTCACTGTAGATTGCTTGGGCCTGGATGCATGGGCCTCT----------------------GTTACACTGGTGCTTGGTCTCAGTTATAACTGGGCACATT-CAGGCAAGAAGGCAAAAACAGATCAG-AACTAGAAAAAGGTCTCTC-AGGGTAGCCCCTTCCCTTGAGGACAGTC----TCCCTCCA---------CTGCAGACATTTCCCTCTGAACAGTAATGAGGGACTTTCCTAGATGCTGGTGCCACATTCATCCAATCAGCTGAGTGCTCCACAGCCCCAAGAGATAGGGCAGGATGGCCACTCAAAGCAAATACAT--------ACTCTTCACTCCTGGCAAGATCCCTCTCTGAGTCCCTGTCTCCTACTGCGCCACGCTTGCCTGGACATGCACACCTCCAAGCCTCCCTGCTTTTCTTCTCCCCAAATCCTAGCCAAGACCTTCTTGGGCTCCCTTTGGGTAAACCGA-GCAGAAGCCGTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226536000 1527 - 229942017 cctaactcctccagaactcag-ttttcgaacctgtaaaatgaagacattgtgctagatgatctttgtgcttccttcaagctctggatctctaattccatgattAGTA----ATGTATGTATGTGTATATAAATATGCTTATCTGTAGAAATGGGCCCATTTGAAAAGTGGAGACAAGGCCTGTCCAAGTGCATTTA-T-TGTGCCAGAAACAGTGAATTCCTAAGTAAGTTCATAAAATCTTGTTTGACAATTCAATGG--CAGTG---CTTAATGTTATTGTCTGAAACCCACTG-TTTAACCAGATGGAAGACT--GGTGCCATTGAAAACATTA-----TTAGTTCACAAGTGTTTGCTGTTAAAATTCTTC-AATAAA--ACTCATTTGTT--AAAGTCAGAAAT-TCAACTCTTCTGTACTTGGGCAGGT-CCCAGCAGCCC-CTTGG----CAGGCT-GGTTTTGTGCATGGGCCTTTGCA-AGCTATATAAACGTTAGGTGTTGGCTTGATTATGATAAA--TATGAGCAGGCTCCCTGGAGAACAGTCCAGAAAAAAAGAG----TTATAGTTCTCACAAACTGGTGACATGAATCCATTAAGCTGTGTGGCATTTTCCAGTGTAAAGACATTGTTTGCTGGCTACGATCTCTGACTTTTTGTGGCATATGAGGTGTAAAATGTTGT--CAAAAAAGAATCTGGTGTTAAAAAAAAAA---TCAAACTATGGTGGCATTAAATGTTCACTTTTATTCTACCCAGAGCTGTGAATTC--CTCTATCCAGTTTCTCCTTCTGTACCTCGGGGAAAAGCAATTCAAGGGCTAGGG---GAGGGTGCTTCTCACGGCAGCAACACCTTGGCCCAAGTCTAG-CCCCCAGGCCTCTCAGGACCTCATGGGATGAGGCCTTTCTAGTCGCCCTGTGGAGCTGGCCCCCAACAAGTTCAGCAGCTCAGCCAGGAGTGAGTAGAGGT-GTCAGCTAAGTCCCAGAGTCACTGGACTTGTTCTGCACGCCT-------GAGAGCCAGACGCTGGG--------------AAAAGTGTGGAGAAGCTTGTGTTGATAACGGGATATTTT--------TGTTGCCCTCCCTCAGTCCAGTGTTTCTGGGGCTCACACAAAATAAGGGAATTTGCAGTCACTGTAGATTGCTTGGGCCTGGATGCATGGGCCTCT----------------------GTTACACTGGTGCTTGGTCTCAGTTGTAACTGGGCACATT-CAGGCAAGAAGGCAAAAACAGATCAG-AACTAGAAAAAGGTCTCTC-GGGGTAGGCCCTTCCCTTGAGGACAGCC----TCCCTCCA---------CTGCAGACATTTCCCTCTGAACAGTAATGAGAGACTTTCCTAGATGCTGGTGCCACATTCATCCAATCAACTGAGTGCTCCACAGCCCCAAGAGATACGGCAGGGTGGCCACTCAAAGCAAATACAT--------ACTCTTCACTCCTGGCAAGATCC----CTGAGTCCCTGTCTCCTACTGCGCCACGCT------GACATGCACACCTCCTAGGCTCCCTGCTTTTCTTCTCCCCAAATCCTAGACAAGACCTTCTTGGGAACCCTTTGGGTCAACCTA-GCAGAAGCCGTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140426746 1526 - 143122389 cctaactcccccagaactcag-ttttctaacatgtaaaatgaagacattgtgctcgaagatctttgtggttccttcgagctctggatctctaattccatgattAGTA----ATGTATGTATGTATATATAAATACGCTTATCTGTAGAAATGGGCCCATTTGAAAAGTGGAGACAAGGCCTGCCCAAGTGCATTTA-T-TGTGCCAGAAACAGCGAATTCCTAACTAAGTTCATAAAATCTTGTTTTACAAT------------------ATAATGTTATTGTCTGAAATCCACTG-TTTAACCAGATGGAAGACT--GGTGCCATTTAAAACGTTA-----TTAGTTCACAAGTGTTTGCTGTTAAAATCCTTT-AATAAA--ACTCATTTGTT--AAAGTCAGAAAT-TCAACTCTTCTGTACTTGGGCAGGT-CCCAGCAA-CC-CTTGG----CAGGCT-GGTTTTGTGTATGGGCCTTTGCA-AGCTACATAAACGTTAGGTGTTGGCTTGATGATGATAAA--TATGAGCAGGCTCCCTGGAGAACAGTCCAGAAAAAAAGAG----TTATAGTTCTCACAAACTGGTGACATGAATCCATTAAGCTGTGTGGCATTTTCCAGTGTAAAGACATTGTTTGCTGGCTACGATCTCTGACTTTTTGTGGCATATGAGGTGTAAAATGTTGT--CAAAAAAGAATCTGGTGTTTAAAAAAAAA---TCAAACTATGGTGGCATTAAATGTTCACTTTTATTCTACCCAGAGTTGTGAATTC--CTCTATCCAGTTTCTCCTTCTGTACCTCGGGGGAAAGCAATTCAAGAGCTGGGGGGTGGGGGTGCTTCTCACGGCAGCAACACCTTGGCTCAAGTCTAG-CCCCCAGGCCTCTCAGGACCTCATGAGATGAGGCCTGTCTAGTCGCCCTGTGGAGCTGGCCCCCAACAAGTGCAGCAGCTCAGCCAGGAGTGAGTAGAGGT-GTCAGCTAAGTCCCAGAGTCCCTAGACCTGTTCTGCACGTCT-------GAGAGTCAGACGCTGGG--------------AAAAGTGTGGAGAAGCTTGTGTTGATAATGGGGTATTTT-------TCGTCGCCCTCCCTCAGTCCAGTGTTTCTGGAGCTCACACAAAATAAGGGAATTTGCAGTCACTGTAGATTGCTTGGGCCTGGATGCATGGGCCTCT----------------------GTTACTCTGCTGCTTGGTCTCAGCTGTAGCTGGGCACATG-CAGGCAAGAAAGCAAAAACAGATCAG-AACTAGAAAAAGGTCTCTC-AGGGTAGCCCCTTCCCTTGAGGACAGTC----TCCCTCCA---------CTGCAGACATTTCCCTCTGAACAGCAATGAGGGACTTTCCTAGATGCTGGTGCCACATTTGTCCAATCAACTGAGTGCTCCACAGCCCCAAGAGATACGGCAGGGTGGCCACTCAAAGCAAATACAT--------ACTCTTCACTCCTGGCAAGATCCCTCTCTGAGTCCCTGCCTCCTACTGCGCCACGCTTGCCTGGACATGCACACCTCCCAGGC-CTCTGCTTTTCTTCTCCCCAAATCCTAGACATGACCTTCTTGGGCTCCCTTTGGGTCAACCGA-GCAGAAGCCGTA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17128665 1525 - 229590362 cctaactcctctggaactcag-ttttctaacctgtaaaaggaagacattgtgctggatgacctttgtggttccttcaagctctggatctcgaattccatgattAGTAATGTATGTATGTATGTATATATAAATATGCTTATCTGTAGAAACGGGCCCATTTGAAACGTGGAGGCGAGGCCTGCCCAGGTGCATTTA-T-CGTGCCAGAAACAGCGAATTCCTAAATAAGTTCATAAAATCTTATTTTACAATTCAATGG--TAGTG---CTTAATGTTATTGTCTGAAATCCACTG-TTTAACCGGATGGAAGACT--GGTGCCATTTAAAACATTA-----TTAGTTCACAAGTGTGTGCTGTTAAAATTCTTT-AATAAA--ACTCATTTGTT--ATAGTCAGAAAT-TCAACTCTTCTGTACTTGGGCAGGT-CCCAGCAGCCC-CTTGG----CAGGCT-GGTTTTGTGCATGGGCCTTTGCA-AGCTATATAAACGTTAGGTGTTGGCTTGATTATGATAAA--TATGAGCAGGCTCCCTGGAGAACAGTCCAG-AAAAAAGAG----TTATAGTTCTCACAAACTGGTGACATGAGTCCATTAAGCTGTGTGGCATTTTCCAGTGTAAAGACATTGTTTGCTGGCTACGATCTCTGACTTTCTGTGGCATATGAGGTGTAAAATGTTGT--CAAAAAAGAATCTGGTGTT------AAAA---TCAAACTATGGTGGCATTAAATGTTCACTTCTATTCTACCCAGAGTCGTGAATTC--CTCTATCCAGTTTCTCCTTCTGTACCTCGGGGGAAAGCAATTCAAGAGTTA---------GGTGCTCCTCACTGCAGCACCACCTTGGCCCAAGTCTAG-CCCCCAGGCCTCTCAGGACCTCATGGGATGAGGCCTGTCTAGTCGCCCTGTGGAGCTGGCCCCCAACAAGTTCAGCAGCTCAGCCAGGAGTGAGTGGAGGT-GTCAGCTAAGTCCCAGAGTCCCTGGACTTGTGCTGCACGCCT-------GAGGGTCGGACGCTGGG--------------AAAAGCGTGGAGAAGCTTGTGTTGACCATGGGATATTTT-------GTGTTGGCCTCCCTCAGTCCAGTGTTTCTGGAGCTCACATAAAATAAGGGAATTTGCAGTCATTGTAGATTGCTTGGGCCTGGATGCATGGGCCGCT----------------------GCTACACTGGTGCTTGGTCTCAGTTGTAACTGGGCACATT-CAGGCAAGAAAGTAAAAACAGATCAG-AACTAGAAAAAGGTCTCCT-AGGGTAGCCCCTTCCCTTGAGGACAGTC----TCCCTCCA---------CTGCAGACATTTCCCTCCGAACAGCAATGAGGGACTTTCCCAGATGCTGGTGCCACATTCATCCAATCAACTGAGTGCTCCACAGCCCCAAGAGATAGGGCAGGGTGGCCACTCAGAGCAAGTACGT------------TTCACTCCTGGCGAGATCCCTCTCTGAGTCCTTGCCTCCTCCTGCGCCACGCTTGCCTGGACACACCCATCTCCCAGGCTCCCTGCTTTTCTTCTCCCCAGATCCTAGACAAGACCTTCTTGGGCTCCCTTTGGGTCGACCGA-GCAGAAGCTGCG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223892618 1525 - 227556264 cctaactcctctggaactcag-ttttctaacctgtaaaaggaagacattgtgctggatgacctttgtggttccttcaagctctggatctcgaattccatgattAGTAatgtatgtatgtatgtatatatAAATATGCTTATCTGTAGAAACGGGCCCGTTTGAAACGTGGAGGCGAGGCCTGCCCAGGTGCATTTA-T-CGTGCCAGAAACAGCGAATTCCTAAATAAGTTCATAAAATCTTATTTTACAATTCAATGG--TAGTG---CTTAATGTTATTGTCTGAAATCCACTG-TTTAACCGGATGGAAGACT--GGTGCCATTTAAAACATTA-----TTAGTTCACAAGTGTGTGCTGTTAAAATTCTTT-AATAAA--ACTCATTTGTT--ATAGTCAGAAAT-TCAACTCTTCTGTACTTGGGCAGGT-CCCAGCAGCCC-CTTGG----CAGGCT-GGTTTTGTGCATGGGCCTTTGCA-AGCTATATAAACGTTAGGTGTTGGCTTGATTATGATAAA--TATGAGCAGGCTCCCTGGAGAACAGTCCAG-AAAAAAGAG----TTATAGTTCTCACAAACTGGTGACATGAGTCCATTAAGCTGTGTGGCATTTTCCAGTGTAAAGACATTGTTTGCTGGCTACGATCTCTGACTTTCTGTGGCATATGAGGTGTAAAATGTTGT--CAAAAAAGAATCTGGTGTT------AAAA---TCAAACTATGGTGGCATTAAATGTTCACTTCTATTCTACCCAGAGTCGTGAATTC--CTCTATCCAGTTTCTCCTTCTGTACCTCGGGGGAAAGCAATTCAAGAGTTA---------GGTGCTCCTCACTGCAGCACCACCTTGGCCCAAGTCTAG-CCCCCAGGCCTCTCAGGACCTCATGGGATGAGGCCTGTCTAGTCGCCCTGTGGAGCTGGCCCCCAACAAGTTCAGCAGCTCAGCCAGGAGTGAGTGGAGGT-GTCAGCTAAGTCCCAGAGTCCCTGGACTTGTGCTGCACGCCT-------GAGGGTCGGACGCTGGG--------------AAAAGCGTGGAGAAGCTTGTGTTGACCATGGGATATTTT-------GTGTTGGCCTCCCTCAGTCCAGTGTTTCTGGAGCTCACATAAAATAAGGGAATTTGCAGTCATTGTAGATTGCTTGGGCCTGGATGCATGGGCCGCT----------------------GCTACACTGGTGCTTGGTCTCAGTTGTAACTGGGCACATT-CAGGCAAGAAAGTAAAAACAGATCAG-AACGAGAAAAAGGTCTCCT-AGGGTAGCCCCTTCCCTTGAGGACAGTC----TCCCTCCA---------CTGCAGACATTTCCCTCCGAACAGCAATGAGGGACTTTCCCAGATGCTGGTGCCACATTCATCCAATCAACTGAGTGCTCCACAGCCCCAAGAGATAGGGCAGGGTGGCCACTCAGAGCAAGTACGT------------TTCACTCCTGGCGAGACCCCTCTCTGAGTCCCTGCCTCCCCCTGCGCCACGCTTGCCTGGACACACACATCTCCCAGGCTCCCTGCTTTTCTTCTCCCCAGATCCTAGACAAGACCTCCTTGGGCTCCCTTTGGGTCGACCGA-GCAGAAGCCGCG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16938045 1527 - 220367699 CCTAACTCCTCTGGAACTCAG-TTTTCTAACCTGTAAAAGGAAGACATTGTGCTGGATGACCTTTGTGGTTCCTTCAAGCTCTGGATCTCGAATTCCACAATTagta----atgtatgtatgtatatataaatatgcttaTCTGTAGAAACGGGCCCGTTTGAAACGTGGAGGCGAGGCCTGCCCAGGTGCATTTA-T-CGTGCCAGAGACAGCGAATTCCTAAATAAGttcataaaatcttattttacaaTTCAATGG--TGGTG---CTTAATGTGATTGTCTGAAATCCACTG-TTTAACCGGATGGAAGACC--GGTGCCATTGAAAACATTA-----TTAGTTCACAAGTGTGTGCTGTTAAAATTCTTT-AATAAA--ACTCATTTGTT--ATAGTCAGAAAT-TCAACTCTTCTGTACTTGGGCAGGT-CCCAGCAGCCC-CTTGG----CAGGTT-GGTTTTGTGCATGGGCCTTTGCA-AGCTATATAAACGTTAGGTGTTGGCTTGATTATGATAAA--AATGAGCAGGCTCCCTGGAGAACAGTCCAG-AAAAAAGAG----TTATAGTTCTCACAAACTGGTGACATGAGTCCATTAAGCTGTGTGGCATTTTCCAGTGTAAAGACATTGTTTGCTGGCTACGATCTCTGACTTTCTGTGGCATATGAGGTGTAAAATGTTGT--CAAAAAAGAATCTGGTGTT------AAAA---TCAAACTATGGTGGCATTAAATGTTCACTTCTATTCTACCCAGAGTCGTGAATTC--CTCTATACAGTTTCTCCTTCTGTACCTCGGGGGAAAGCAATTCAAGAGTTAGGT---CTGGGTGCTCCTCACTGCAGCACCACGTTGGCCCAAGTCTAG-CCCCCAGGCCTCTCAGGACCTCATGGGATGAGGCCTGTCTAGTCGCCCTGTGGAGCTGGCCCCCAACAAGTTCAGCCGCTCAGCCAGGAGTGAGTGGAGGT-GTCAGCTAAGTCCCAGAGTCCCTGGACTTGTGCTGCACGCCT-------GAGGGTCGGACGCTGGG--------------AAAAGCGTGGAGAAGCTTGTGTTGACCATGGGATATTTT-------GTGTTGGCCTCCCTCAGTCCAGTGTTTCTGGAGCTCACACAAAATAAGGGAATTTGCAGTCACTGTAGATTGCTTGGGCCTGGATGCATGGGCCGCT----------------------GCTACACTGGTGCTTGGTCTCAGTTGTAACTGGGCACATT-CAGgcaagaaagcaaaaacagatcAG-AACTAGAAAAAGGTCTCCT-AGGGTAGCCCCTTCCCTTGAGGACAGTC----TCCCTCCA---------CTGCAGACATTTCTCTCCGAACAGCAATGAGGGACTTTCCCAGATGCTGGTGCCACATTCATCCAATCAACTGAGTGCTCCACAGCCCCAAGAGATAGGGCAGGGTGGCCACTCAGAGCAAGTACTT------------TTCACTCCTGGCAAGATCCCTCTCTGAGTCCCTGCCTCCTACTGCGCCACGCTTGCCTGGACACACACATCTCCCAGGCTCCCTGCTTTTCTTCTCCCCAGATCCTAGACAAGACCTTCTTGGGCTCCCTTTGGGTCGACCGA-GCAGAAGCCGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82740419 1524 + 85787240 cctaactcctctggagctcag-ttttctaa-ctgtaaaaggaagacattgtgctggacgacctttgtggttccttcaagctctggatctcgaattccatgattAGTA----ATGTATGTATGTATATATAAATATGCTTACCTGTAGAAACGGGCCCGTTTGAAATGTGGAGGCAAGGCCTGCCCAGGTGCATTTA-T-CATGCCAGAAACAGCGAATTCCTAAATAAGTTCATAAAATCTTATTTTACAATTCAATGG--TAGTG---CTTAATGTTATTGTCTGAAATCCACTG-TTTAACCGGATGGAAGACT--GGTGCCATTTAAAACATTA-----TTA-TTCACAAGTGTTTGCTGTTAAAATTCTTT-AATAAA--ACTCATTTGTT--ATAGTCAGAAAT-TCAACTCTTCTGTACTTGGGCAGGA-CCCAGCAGCCC-CTTGG----CAGGCT-AGTTTTGTGCATGGGCCTTTGCA-AGCTATATAAACATTAGGTGTTGGCTTGATTATGATAAA--TATGAGCAGGCTCCCTGGAGAACAGTCCAG-AAAAAAGAG----TTATAGTTCTCACAAACTGGTGACATGAATCCATTAAGCTGTGTGGCATTTTCCAGTGTAAAGACATTGTTTGCTGGCTACGATCTCTGACTTTCTGTGGCATATGAGGTGTAAAATGTTGT--CAAAAAAGAATCTGGTGTT------AAGA---TCAAACTATGGTGGCATTAAATGTTCACTTCTATTCTA-CCAGAGTCGTGAATTC--CTCTGTCCAGTTTCTCCTTCTGTACCTCAGGGGAAAACAATTCAAGAGTTAGGT---CTGGGTGCTCCTCACTGCAGCACCACCTTGGCCCAAGTCTAG-CCCCCAGGCCTCTCAGGACCTCATGGGATGAGGCCTGTCTAGTCGCCCTGTGGAGTTGGCCCCCAACAAGTTCAGCAGCTCAGCCAGGAATGAGTGGAGGT-GTCAGCTAAGTCCCAGAGTCCGTGGACTTGTCCTGCACGCCT-------GAGGGTCGGACGCTGGG--------------AAAAGCGTGGAGAAGCTTGTGTTGACCATGGGATATTTT-------GTGTTGGCCTCCCTCAGTCCAGTGTTTCTGGAGCTCACATAAAATAAGGGAATTTGCAGTCATTGTAGATTGCTTGGGCCTGGATGCATGGGCCGCT----------------------GCTACACTGGTGCTTGGTCTCAGTTGTAACTGGGCACATT-CAGGCAAGAAAGTAAAAACAGATCAG-AACTAGAAAAAGGTCTCCT-AGGGTAGCCCCTTCCCTTGAGGACAGTC----TCCCTCCA---------CTGCAGACGTTTCCCTCCGAACAGCAATGAGGGACTTTCCCAGATGCTGGTGCCACATTCATCCAATCAACTGAGTGCTCCACAGCGCCAAGAGATAGGGCAGGGTGGCCACTCAGAGCAAGTACTT------------TTCCCTCCTGGCAAGATCCCTCTCTGAGTCCCTGCCTCCTACTGCGCCACGCTTGCCTGGACACACACATCTCCCAGGCTCCCTGCTTTTCTTCTCCCCAGATCCTAGACAAGACCTTCTTGGGCTCCCTTTGGGTCAACCGA-GCAGAAGCTGCG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14458167 1475 - 49578535 cctggcttctctggaac-agg-ttttctaacctgtcaaatgaagacgctgtgctagctgatctttgcgcttccttcgagctccaggtctctgagtccacgattAGTG----ATGTATGTATGTATATATAAATATGCTTATCTGTAGAAATGGGCCCACTGGAAAATTGGAGACAAGGCCTGCCCAGGTGCATTTA-T-TGTGCCAGAAACAGCAAATTCCT-AGTAAGTTTATGAAGTCTTGTTTGACAGTTCAATGG--TAGTG---CTGAATGTTACTGTCTGAGATCCACTG-TTCAACCAGATAGGTGATT--GGTGCCATTTAAAAAATTA-----CTAGTTCACAAGTGTTTGCTGTTCAAATTCTTC-AATAAA--ACTCATTTGTT--AAAGTCAGAAAT-TAAACTCTTCTGTACTTGGGCAGGT-CCCAACAGCCC-CCT-G----CAGGCT-GGTTTTGTGCATGGGCCTTTGCATAGATACATAAAAGTTAGGTGTTGGCTTGATCATGATAAATGTATGAGCAGGCTCCCTGGAGAACAGTCAAG-AAAAAAGCG----TTATAGTTCTCCCAAACTGGGGACATGAATCCATTAAGCTGTGTGGCA-TTTCCAGTGT--AGACATTGTTTGCTGGCTGCGATCT----CTTTTTGTGGCATATGAGGTGTAAAATGTTGT--CAGAAAAGAACCTGGTGTTTAAA--AGAA---TCAAACTGTGGTGGCATTAAATGTTCACTTTTATTCTACCCAGAGTCGCGAATTC--CTCT----------TTATCCAGTACCTAGGGAGAAAGTGATTCAAGACCTGGGG---GCGGGTGCTTCTCACTACAGCAACACCTTGGCCC-AGTCTAGCCCCCCAGGCCTCTCAGGACCTCC----------------------CACTG-------GGCCCCCAACAAGTTCTGAAGATCAGCCAGGAGTGAGTGGATGT-GTCAGCTAAGTCCCCGAGTCCCTGGACTTGCAC------CCT-------GAGAGTTGAACACTGGG--------------AAGAGTATGGAGAAGCTTGTGGTGATAGTGTGCTATCTG-------CTGTTGCCCTCCCTCAGTCCAGTGTTTCTGGGGCTCACACAAAATAAGGGGATTTGCAGCCACTGCAGCCTGCTTGGGCCTGGATGCATGTGCCCCC----------------------GTTACAGGAGTGCTT-GTCTCAGTTGTAACTGGGCATGTT-CAGACAAGAAAGCAAAAACAGATCAG-AACCAG-GAAAGGTCTTCG-AGGGAAGCACCTTCCCTTGAGGACAGTC----TCCTTCCA---------CTGCAGACACATTGCCCTGGGCAGCAATGAGGGACCATCCTAGGTGCTGATGCCACATCCATCCAATCAACTGAGTGCTCCACAGCCCC--GAAACAGGGCAGCGTGGCCACTCAAAGCAAACACTC--------ACTCTTCACTCCTAGCAAA--CCCTCTCTGCATCCCTGTCTCCTGCTCTGCCGTGCCTGCCTGGACATGCTCACCTCCCAGGCTCCCTGCTTTTCTTCTCGCCAAATCCTAGACAAGACCTAC-TGGCCTTCCTTCGGGTAAACTGA-GCAGAAGCCAC- i calJac3.chr19 C 0 C 0 s mm10.chr1 178938471 1460 + 195471971 ---aactcttctggacctcagattttctaagtcataaaacaaggacattgtggcatgggatctttgtggttcttccaa-ctttgGTGACGAGAGCCCCTAACGGGTG----ATGTATGTATGTATATATCGATATGCTTATCTGTAGAAACGGGCCCATTGGGAAATTGGAGACGAGGCCTGCCCGAGTGCATTGACT-TGTAACAGAATCGGCAACTTC----ACAAGTCCGTAAGCCTTCATTTTAAAAGTCGATGGGATGGTGTCATTTACTGTCATTGTTTCAAATTCACTG-TTGAACTGGGTAGAGGATT--GGTGCTGTTTTAAAAACTAAGTTCTTAGCTCACAAGTGTTTGCTGTT---ACTTTTC-AAAACACGAGTCATTTGTTCAAAAGTCAAACTT-TTAACTCTGC----CTTGGGCAGGTCCCCAACAGCCTGTTTTG----CAGGCTGGGTTTTGTGTATGGGCTTTTACATAACTATATAAAAGTTAGCTGTTGGCTTGATCATGGTAAA--TATGAACAGATTGCCTGGAGAACAGTCCAGAAAAGAATTGAATTCTATAGTTCTCATCAACTGGTGACATGAAACCATTAAGCTGTGTGCAATTCCCTGGTGTGAAGATATTGTTCACTGGCTACAGTCTCTGACTT--TGTGGCATATGAGGTATAAAATGTTGTAAAAAAAAAAAATCTGGTGTTTAAA--AGAA---TCAAAGTATGGTGGCATTAAATGTTCACTTTTATCCTACCCAGAGTTGTGCTTCCTTCTCTGCCCAGGAGGTCTTTTTATACACCAGGGGAATGCCGTGCTAGGACTAAGA---CCGGTCACT--GTACTAAAGTCATACCTTAGCATATG---GG-ACTCCAGGTCCAACGGGTCCTCGGGGGCTCA--CCTGTCTAGTCTCCCTATGGGTCTGTCCTGCAATAAGT-CAG--ACTCAGGCAGGAATGGATGGAGGT-GAGAGCT--GTCACAGAATCCCAGGAATGGTCCTCTGTCCCCTGTCGCAGAGAGTCAGCT-----------------------AGCATG---------GTGTTAG--------------------------AGTCCCCCTCAGTTCCATATTTCTAGTG-TTACACCAAATCAGGGGGCGTGTGATGGTTGCATGTGGCTTGAGCCTGGACACAGGGGTTCCTCATTCCCCGGGTACTTGTCTTCATTACTCTGGCACTT-GTCTCAACTACAACTAAGTACATTGCAG--AAGACGGAGAAAAAAGGTTGG-GAATGTACAAACATCTCCT-AGGGCAGCTCCTGCCCCCAAGGACAACCTCTGTCCCTCCA---------ACACAG--------------GCAGCAATG-------------------GGCACCA-------TCAGTCATCAGGGTGCAC--CAGTGTCTAGAGGACAGGCTGAGTGGCCACC--AAGCAAACACGT--------GCTCTTGCTTCTGCCCAGGAAGCTGCTCTGA-----------CAACCTTGCCACACTTG--TGGG---------CCCCTAAGACCTCTGGTTTTC--CTTCTCATATCTTAGACAAGGCCTTGCTGAGCTTCCAGTGGGTCATTAAA-GAAGAGCCCATA i mm10.chr1 C 0 I 1707 s canFam3.chr7 36528628 1508 + 80974532 ccaaacttctccgggactctg-ttttcaactctgtaaaatgggcacattgtgctacatgagcgtggtggttcctgc----------------------cGCCTAGTA----ATGTATGTATGTATATATAAACCTGCTTATCTGTAGACGCGGGCCAACTTGGAAATGGGACACGAGGCCTGCCGAG--TCACTCA-TCTGTGTGAGAAACGGCCGATTCAC-AACAAGGTCACAGAATCTTGATTTAAAATTCACTGG--TAGTA---TTTACGATCATGGTTTTAAATTCACTGTTTTAACTGGATAAAGGATT--GGTGCCGTCTTAAAGATCAAGTTCTTAGCTTATAAGTGTTTGCTGTTAAAACTTTTTAAATAAA--GTTCATTTGTC--GAAGGCTGAAATCCCAACTATTCTGTACTTGGGCAGGT-CCCAACAGCCT-CTTTGCAAACAGGCTGGGTTTTGTGTCTGCGTCCATACATTGCTGTATCAAAGCTAGCCGCTGGCTCGATCCTGATAAC--CATGAGCAGGCTACCTGGAGAACAGTCTGG-AAGAGAAAG----TTCTAGTTCTCACAAACTGATGAC--GAACCCATTAAGCTGTGTGCCA-TTTCCAGTGTGAAGACGTTGTTTGCTGGCGACGATCTCTGACTTTTTGTGGCATATGAGGTGTAAAATGTTGT--CA-AAAAGAATCTGGTGTTTAAAA-AGAA---GCAAACTATGGTGGCATTAAATGTTCACTTCTATTCTACTCGGAGTTCTGGATGC--CTCTATCCACTGTATCCTTCTGTGCAGAGGGGTAA--TAATTCAAGGCCCCGGAG--GAGGGTTCTTCTCACTAGAGCAAGCCCTTGGCTGTGGGCTTC-CTCCCAG-------------------CATGAGGCCTGTCTCCTCCCGCTCGGGGGCTGCCCTCCAGCAAGTTCGGAAGCTTGCCCAGAGCTGGGTGTAGGTGGGGGGCTGAGTCCCAGAGCCCCAGCATTGGT-CGGCATCCCC-------GGGAGTCGGCCACTGGGCTGGGATCACACATGCAAGTGTGAAG-----CGTGGCGCTGGGGTGGTGTTTTTGTTGGCCTGGTGCCCGTCCCCGGTGCAGGG--TCTGGGGCTTGCACAGAATGCAGGCATTCTCCTCCTCTGCAGACGGCTCAGGCTCGGACACACAACCCCTT----------------------GTTACAGCTGTGTC--GTCTCCACTGCGACT-AGTACATG-CAGGGCAGGAAGCAGAACAAGGTCAGAAACTGGAAGGAAGTCTCCTCAGGGCACCCCGCCCCACCAGGGACAGTC----TCTTCCCACCCTGACCCCTGCAGAC---TCTCCCCGAGCAGCCGTCGGGCACTTTCTGAGCTGCGGGAACC-CATCCA-CCGGGCAGCTGAG------------------GGGAGGGCAG--CGGCCACCCCCGGCAAATGCCCAGATGCACACGCTTGGCTCCTGGCGCGGCCCTGCCCTGACTCCACGTCTCCCCCTCTGCAGAGCTGGCCTGGACACCCACACCTCCTAGGCTCCCCACTCTGCCTCTTCCTAAATCGCCCACGACACCTTCCTGCGCTCCCTTTGGGCCACTCTAGGCAGCAACCATA i canFam3.chr7 C 0 C 0 a score=379948.000000 s hg38.chr1_KI270759v1_alt 408273 134 + 425601 AGGGTTTTCTAAACA--TAATGCCTTCAACTAGAAGAGAAGGTAGAGGTGGTGCCAAA--CTGATCATTCCCTTGGGGAGGAGACGATGGAAAGGCAGCCTCTATTATAGAATTGTTTCTAATGCCCTCACTCCTCCC s panTro4.chr1 225165949 134 + 228333871 AGGGTTTTCTAAACA--TAATGCCTTCAACTAGAAGAGAAGGTAGAGGTGGTGCCAAA--CTGATCATTCCCTTGGGGAGGAGACGATAGAAAGGCAGGCTCTATTATAGAATTGTTTCTAATGCCCTCACTCCTCCC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226537527 134 - 229942017 AGGGTTTTCTAAACA--TAATGCCTTCAACTAGAAGAGAAGGTGGAGGTGGTGCCAAA--CTGATCATTCCCTTGGGGAGGAGATGATGGAAAGGCAGCCTCTATTATAGAATTGTTTCTAATGCCCTCACTCCTCCC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140428272 134 - 143122389 AGGGTTTTCTAAACA--TAATTCCTTCAACTAGAAGAGAAGGTGGAGGTGGTGCCAAA--CTGATCGTTCCCTTGGGGAGGAGGTGATGGAAAGGCAGCGTCTATTATACAATTGTTTCTAATGCCCTCACTCCTCCC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17130190 134 - 229590362 AGGATTTTCTAAACACATAATAGCTTCAGCTAGAAGAGCAGGTGGAGGCGCTGCCAAA--CTGATCATCCCCTTGGAGAAGAGA--ACGGAAAGGCAGCATCTGTTACAGAATTGTTTCTAATGCCCTCACTCCTCCC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223894143 134 - 227556264 AGGATTTTCTAAACACATAATAGCTTCGGCTAGAAGAGCAGGTGGAGGTGCTGCCAAA--CTGATCATCCCCTTGGAGAAGAGA--ACGGAAAGGCAGCATCTGTTACAGAATTGTTTCTAATGCCCTCACTCCTCCC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16939572 134 - 220367699 AGGATTTTCTAAACACATAACACCTTCAGCTAGAAGAGCAGGTGGAGGCGCTGCCAAA--CTGATCATCCCCTTAGAGAAGAGA--ATAGAAAGGCAGCATCTGTTATAGAACTGTTTCTAATGCCCTCACTCCACCC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82741943 134 + 85787240 AGGGTTTTCTAAACACGCAATACCTTCAGCTAGAAGAGCAGGTGGAGCCGCTGCCAAA--CTGATCATGCCCTTGGAGAAGAGA--ACGGAAAGGCAGCATCTGTTACAGAATTGTTTCTAATGCCCTCACTCCACCC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14459642 134 - 49578535 AGGGTTTTCTAAACA--TACCGCCTTCAACTGGAAGAGCAAGTGGGGGTGCTGCCAAC--CTGATCCTTTTCTTGAAGAAGAGAGAATGGAGAGGCAGCATCTATTACGGAATTGTTTCTAACGCCCTAACTCCTCCC i calJac3.chr19 C 0 C 0 s canFam3.chr7 36530136 122 + 80974532 --GGTTCT---------TAAGAAGCTTTGATAGAAGAGTAAGTGGAGGCGCTGCCTGACTCTGAGCATCCCCCTGAGAGACAGGAGGCCGCAAAGCTGCATCT-----AAAACTGATGCTAGCCCCCTCACCCTTACC i canFam3.chr7 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I a score=350810.000000 s hg38.chr1_KI270759v1_alt 408407 127 + 425601 AATTAAAGACCTTCTCAGTGCTCTGCTGGCCTGTCGTAGCCTATAATACATCTTGTCCC-AATTCACATCAGCACCTCTCGTCTC------------TGGGAAGGATATGTATTGTGTGGTCATCAGAAGTAACTTTTCA s panTro4.chr1 225166083 127 + 228333871 AATTAAAGACCTTCTCGGTGCTCTGCTGGCCGGTCGTAGCCTATAATACATCTTGTCCC-AATTCACATCAGCACCTCTCGTCTC------------TGGGAAGGATATGTATTGTGTGGTCATCAGAAGTAACTTTTCA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226537661 126 - 229942017 AATTAAAGACTTTCTCAGTGCTCTGCTGGCCTGTCATAGCCTACAATACATCTTGTCCC--GTTCACATCAGCGCCTCTCGTCTC------------TGGGAAGGATGTGTATTGTGTGGTCATCAGAAGTAACTTTTCA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140428406 126 - 143122389 AACTAAAGACTTTCTCAGTGCTGTGCTGGCCTGTCATAGCCTACAATACATCTTGTCCC-AGTTCACATCAG-GCCGCTCGTCTC------------TGGGAAGGATATGTATTGTGTGGTCATCAGAAGTAACTTTTCA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17130324 128 - 229590362 AGTTGAAGACTCTCTCAGTGCTCTGCTGGCCTGTCACAGCCTATAATACATCTTGTCCCCAGTTCACATCAGAGCCTCTCATCTC------------TGGGAAGGATGTGCGTTGTGTGGTCATCAGAAGTAACTTCTCA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223894277 128 - 227556264 AGTTGAAGACTCTCTCAGTGCTCTGCTGGCCTGTCACAGCCTATAATACATCTTGTCCCCAGTTCACATCAGAGCCTCTCATCTC------------TGGGAAGGATGTGCGTTGTGTGGTCATCAGAAGTAACTTCTCA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16939706 126 - 220367699 AATTGAAGA--CTCTCAGTGCTCTGCTGGCCTGTCACAGCCTATAATACATCTTGTCCCCAGTTCACATCAGAGCCTCTCATCTC------------TGGGAAGGATGTGCATTGTGTGGTCATCAGAAGTAACTTCTCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82742077 128 + 85787240 AATTGAAGACTCTCTCAGTGCTCTGCTGGCCTGTCATAGCCTAAAATACATCTTGTCCCCAGTTCACATCAGAGCCTCTCATCTC------------TGGGAAGGATATGCATTGTGTGGTCATCAGAAGTAACTTCTCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14459776 140 - 49578535 AATCCAAAACTCTCTCAGTTCTCTGCTGGCCTGTCATGGCCCATAACATACCTTGTCACCAGTTCATGTCAGAGTCTCTCCTCTCTGAAGAGGCTGGTGGGAAGGATATGTGTTGTGTGGCCATCAGAAGTAACTTCTCA i calJac3.chr19 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36530258 0 + 80974532 C a score=1956375.000000 s hg38.chr1_KI270759v1_alt 408534 656 + 425601 TTA-GGAAAAAAACTATCCAAATATACAA-TCTTAGGTGGATCTGTCCCTCAAACCATTAAACTATCCAAACTGTTCTT------ACTTTTATTCTTTCCATCCTTTTTGATCCTGTCTCTTTGTCTCAGGGAGGA--------------CAGTGGCCATTCTGCCTACCTTGGCACCATGCTGCATTTGGCCAGACGCCCCTGGGACTAGAAGGTCAT-AGAAAAGAAAGCAAGGTGATGTCATTGTCCAGCAATGGCAGATCAGGCTATGGCTGCACCTGGATGGAGAAAATGCCTCCGCATCTATGCAGGACCTGTTGCAGTGTCTGATGCTTCCACTTGTTTTTCTAGCTGAAGGTGTTGTTTCTAGAAAACCCTTATAAATCTACAGAGCACTTGGAGTGTAAATGCATTGACCTGCCAGTGGCTGCAGTGCTCCTAACACCCATGGAT-----ATCtcttgttctataactccagtggctagaacagaacatggaacatagtgggtgctcaaccaatattagctgaatgaatgaat--------CAATCAATTATTCAACTTTGGGGGAAGAG---GCAACAACAAAAACCTGGGCAGGGGCCTGC-A-GCATTTCAGAGTCCCGTGACAAGTGGACCAAAGGTCTGCATTTG-CAAACCCCTAC-----TGGGATTAA-TCCCTAATTCCCAGTGGA s panTro4.chr1 225166210 656 + 228333871 TTAGGGGAAAAAACTATCCAAATATACAA-TCTTAGGTGGATCTGTCCCTCAAACCATTAAACTATCCAAACTGTTCTT------ACTTTTATTCTTTCCATCCTTTTTGATCCTGTCTCTTTGTCTCAGGGAGGA--------------CAGTGGCCATTCTGCCTACCTTGGCACCATGCTGCATTTGGCCAGACGCCCCTGGGACTAGAAGGTCAT-AGAAAACAAAGCAAGGTGATGTCATTGTCCAGCAATGGCAGATCAGGCTATGCCTGCACCTGGATGGAGAAAACGCCTCCGCATCTATGCAGGACCTGTTGCAGTGTCTGATGCTTCCACTTGTTTTTCTAGCTGAAGGTGCTGTTTCTAGAAAACCCTTATAAATCTACAGAGCACTTGGAGTGTAAATGCATTGACCTGCCAGTGGCTGCAGTGTTCCTAACACCCATGGAT-----ATCtcttgttctataactccagtggctagaacagaacatggaacatagtgggtgctcaaccaatattagctgagtgaatgaat--------CAATCAATTAATCAACTTTGGGGGAAGAG---GCAACAACAAAAACCTGGGCAGGGGCCTGC-A-GCATTTCAGACTCCCGTGACAAGTGGATCAAAAGTCTGCATTTG-CAAACCCCTAC-----TGGGATTAA-TCCCT-ATTCCCAGTGGA i panTro4.chr1 C 0 M 1341 s ponAbe2.chr1 226537787 656 - 229942017 TTA-GGAAAAAAACTATCCAAATATACAA-TCTTAGGTGGATCTGTCTCTCAAACCATCAAACTATCCAAACTGTTCTT------ACTTTTATTCTTTCCATCCTCTTTGATCCTGTCTCTTTGTCTCAGGGAGGA--------------CAGTGGCCGTTCTGCCTGCCTTGGCACCATGCTGCATTTGGCCAGCCGCCCCTGGGACTAGAAGGTCAC-AGAAAACAAAGCAAGGTGATGTCATTGTCCAGCAATGGCAGATCAGGCTATGCCTGCACCTGGATGGAGAAAACGCCTCCGCATCTATGCAGGACCTGTTGCGGTGTCTGATGCTTCCACTTGTTTTTCTAGCTGAAGGTGTTGTTTCTAGAAAACCCTTATAAATCTACAGAGCACTTGGAGGGTAAATGCATTGACCTGCCAGCGGCTGCAGTGCTCCTAACTCCCATGGAt-----gtctcttgttctataaccccagcggctagaacagaacctggaacacagtgggtgctcaaccaatattagctgaatgaatgaat--------CGATCAATGAATCAACTTTGGGAGAAGAG---GCAACAACAAAAACCTGGGCAGGGGCCTGC-G-GCATTTCAGACTCCCTTGACAAGAGGACCAAAGGTCTGCATTTG-CAAACCCCTAC-----TGGGACTAA-TCCCTAATTCCCAGTGGA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140428532 656 - 143122389 TTA-GGAAAAAAACTCTCCAAATACACAA-TCTTAGGTGGATCTGTCTCTCAAACCATTAAACTATCCAAACTGTTCTT------ACTTTTATTCTTTCCATCTTTTTTGATCCTGTCTCTTTGTCTCAGGGAGGA--------------CAGTAGCCATTCAGCCTACCTTGGCACCATGGTGCATTTGGCCAGACACCCCTGGGACTAGAAGGTCAT-AGAAAACAAAGCAAGGTGATGTCATTGTCCAGCAATGGCAGATCAGGCTATCCCTGCACTCGGATGGAGAAAACGCCTCCGCATCTATGCAGGCGCTGTTGCAGGACCTGATGCTTCCACTTGTTTTTCTAGCTGAAGGTGCTGTTTCTAGAAAACCCTTATAAATCTACAGAGCACTTGGACTGTAAATGCATCGACCAGCCAGTGGCTGCAGTTCTCCTAACACCCATGGAt-----gtctcttgttctataaccccagcggctagaacagaacctggaacatagtgggtgctcaaccaatattagccgaatgaatgaat--------CGATCAATTAATCAACTTTGGGAGAAGAG---GCAACAACAAAAACCTGGGCAGGGGCCTGC-A-GCATTTCAGACTCCCTTGGCAAGAGGACCAAAGGTCTGCATTTG-CAAACCCCTAC-----TCGGATTAA-TCCCTAATCCCCAGTGGA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17130452 650 - 229590362 TTA-GGGAAAAAACTATCCAAATATACAATTCTTAGGTATATCTGTCTCTCAAACCATTAAACTATCCAAATTGTTCTT------TCTTTTATTCTTTCCATACTTTTTGATCCTGTTTC--TGTCTCAGGGAGGA--------------CAGTGGCCATTCTGCCTACCTTGGCACCATGGTGCACTTGGTCAGACACCCCTGAGACTAGAAGGTCATAAAAAAACAAAACAAGGCAATGTCATTGTCCAGCAATGGCAGATCAGGCTATCCCTGCACCGGGCTGGAGAAAATGCCTCCGCATCGATGCAGAACCT-TTGCAGTGTCCGACGCTCCCACTTATTTTTCCAGCCGAAGGTGGTGTTTCTAGAAAACCCTTATAAATCTATAGGGCACTTGGAGTGTAAATGCATTGACCCGACAGTGGCTGCAGGGCTCCTAACACCCATGAAt-----gtttcttgttctataaccccagcagctagaacagaacctggaacatagtgggtgctcaaccaatattagctgaatgaatgaat--------CGATC----AATCACATTTGGGAGAAGAG---ACAACAACAAAAACCTGGGCAGGGGTCTGC-A-ACATTTCAGACTCCC-TGACAAGAGGACCAAAGGTCTGCATTTG-CAAACGCCTGC-----TGGGACTAA-TCCCTAATTCCCAGTGGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223894405 650 - 227556264 TTA-GGGAAAAAACTATCCAAATATACAATTCTTAGGTATATCTGTCTCTCAAACCATTAAACTATCCAAATTGTTCTT------TCTTTTATTCTTTCCATACTTTTTGATCCTGTTTC--TGTCTCAGGGAGGA--------------CAGTGGCCATTCTGCCTACCTTGGCACCATGGTGCACTTGGTCAGACACCCCTGAGACTAGAAGGTCATAAAAAAACAAAACAAGGCAATGTCATTGTCCAGCAATGGCAGATCAGGCTATCCCTGCACCGGGCTGGAGAAAATGCCTCCGCATCGATGCAGAACCT-TTGCAGTGTCCGACGCTCCCACTTATTTTTCCAGCCGAAGGTGGTGTTTCTAGAAAACCCTTATAAATCTATAGGGCACTTGGAGTGTAAATGCATTGACCCGACAGTGGCTGCAGTGCTCCTAACACCCATGAAt-----gtttcttgttctataaccccagcagctagaacagaacctggaacatagtgggtgctcaaccaatattagctgaatgaatgaat--------CGATC----AATCACATTTGGGAGAAGAG---ACAACAACAAAAACCTGGGCAGGGGTCTGC-A-ACATTTCAGACTCCC-TGACAAGAGGACCAAAGGTCTGCATTTG-CAAACGCCTGC-----TGGGATTAA-TCCCTAATTCCCAGTGGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16939832 643 - 220367699 TTA-GGGAAAAAACTATCCAAATATACAATTCTTAGGTGTATCTGTCTCTCAAACCATTAAACTATCCaaattgttctt------tcttttattctttccatcCTTTTTGATCCTGTCTCTTTGTCTCAGGGAGGA--------------CAGTGGCCATTCTGCCTACCTTGGCACCATGGTGCACTTGGCCAGACGCCCCTGAGACTAGAAggtcataaaaaaacaaaacaaggcaatGTCATTGTCCAGCAATGGCAGATCAGGCTATCCCTGCACCGGGATGGAGAAAATGCCTCCGCATCTATGCAGACCCT-CTGCAGTGTCCGACGCTTCCGCTTATTTTTCTAGCTGA-------------AGAAAACCCTTATAAATCTATAGAGCACTTGGAGTGTAAATGCATTGACCCGACAGTGGCTGCAGTGCTCCTAACACCCATGAAT-----GTTTCTTGTTCTATAACCCCAGCAGCTAGAACAGAACCTGGAACATAGTGGGTGCTCAACCAATAttagctgaatgaatgaat--------cgaTCAATTAATCACATTTGGGAGAagag---acaacaacaaaaacctgggCAGGGGTCTGC-G-ACATTTCAGACTCCC-TGACAAGAGGACCAAAGGTCTGCATTTG-CAAACGCCTGC-----TGGGATTAA-TCCCTAATTCCCAGTGCA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82742205 656 + 85787240 TTA-GGGAAAAAACTATCCAAATATACAATTCTTAGGTGTATCTGTCTCTCAAACTATTAAACTATCCAAATTGTTCTT------TCTTTTATTCTTTCCATCCTTTTTGATCCTGTCTCTTTGTCTCAGGGAGGA--------------CAGTGGCCATTCTGCCTACCTTGGCACCATGGTGCACTTGGCCAGACACCCCTGAGACTAGAAGGTCATAAAAAAACAAAACAAGGCAATGTCATTGTCCAGCAATGGCAGATCAGGCTATCCCTGCACCAGGATGGAGAAAATGCCTCCGCATCTATGCAGAACCT-CTGCAGTGTCCGACGCTTCCACTTATTTTTCTAGCTGAAGGTGTTGTTTCTAGAAAACCCTTATAAATCTATAGAGCACTTGGAGTGTAAATGCATTGACCTGACAGTGGCTGCAGTGCTCCTAACACCCGTGAAt-----gtttcttgttctataaccccagcagctagaacagaacctggaacatagtgggtgctcaaccaatattagctgaatgaatgaat--------CGATCAATTAATCACATTTGGGAGAAGAG---ACAACAACAAAAACCTGGGCAGGGGTCTGC-G-ACATTTCAGACTCCC-TGACAAGAGGACCAAAGGTCTGCATTTG-CAAACGCCTGC-----TGGGATTAA-TCCCTAATTCCCAGTGGA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14459916 663 - 49578535 TTA-GTGGAAAAACTATTGACATGTATAA-TCTGAGGTATATCTGTCTCTCAAACCATTAAACCATCAAAATTGTTCTTATTATGACTTTTATCCTTTCCATACTTTTTGATCCTGTCTCTTTGTCTTGGGGAGGACATGAACCAGTAGTCAGTGGCCATTCTGCCTCCCTTGGCCTCAGGATGCCCTTGGCCAGACCCTCCTGGTACTGGAAGGTCAT-GAAAAGCA---------------------CAGCAATAGCAGGTCAGGCTACCCCTGCACCCGGACGCAGAAAATGCCTCCTCATCCATTCAGGGCCTGTTGCAGTGTCTGACAGGCCCACTTGTTTTTCTAGCTAAAGGCGCTGTTTCTAG-AGACCCTTCTAAAGCTACAGAGCGCTGGGAGTACACATGCATTGGCCTGTCAAAGGCTGCAGTGCTCCTAACACCCATGGGt-----gtctcttgttctataaccccagcagctagaacagaacctggaacatggtgggtgctcaaccaatattagccgaatgaatgaatGAATCAACCAATCAATTAATCAGCTTTGGGAGAAGAGGCAGCAACAACAGAAACCCGGTT-GGAGTGTGC-GCAAACGTCAGACTCCCTTGACA---GGACCACAGGTCTGCATTCGCCAAACACCTGC-----TGGGACTGA-GTCCCTCTTCTCAGTGGA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36530258 607 + 80974532 CTT-GAGAAAAAACCATCCAAACGTACGC-TCTTA-CTGCAT-GGTCTCTCAAAGCACTCAAA-ATTGTGATTAGTGTT------CCGTTTATTCTTTT--TCCCTTTCGATCCTGCTTTTTCATCTCAGGGAGAA--------------CATTAACT-CTCTGTCCACCATGGCACC--------------------CTCCT----CCAGATGGACAT--AAAAACAGAGCAAGGTGACACCACTGACTAGCAA-AGCACTTTAGACTGTCCTGGCACCTGCACGGAGGAAGTGTCTCC-----------------------ATGTCTGATGCTTCCACTTGCTCCTCCAGGTGAAGGCTTAGTTTCCAGAAAA--CTTATAAACATTTGGAGCCCTTGGAGTGTAAACAGTTTGGCCTGTCAGCAGCTGGTGTGATCCCagcacctgggggcggaggggctcttcttctacatcttcagcctctagaacagagtctggggtatagtggctact----caatattaattgtatggatCGAT--------AGATGGATGGATGACCTTTGGGAGAAGAG---GGACCGGACAACACTTGGGCTTGAGTCTGCTA-AAATTTCAAACACCTTTAACCGAAGGACTGGAGGTCTGTGTTTG-CAAATAAATGCACAGTTGGGATTAAGTTCCCAGGTCACAGTGTA i canFam3.chr7 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I a score=2546389.000000 s hg38.chr1_KI270759v1_alt 409190 1175 + 425601 GAAGGAGCACCAGGCCCACACAAGGCCAGACCCACGCCCTGGGCTTCTTACGCACACAGCCTTGACCTCCACAGCCACGGAGCAGCCTTGGCTTTCAGGCCTCCTAAAGCATGTTTCT--AAGAGATGAAAAAGAGTC--GTGTTCAAGCTCGTGGATTCCGTCTCAACATGTATAAAACAATCGTCGAGCAAACCCTCACTGAGCA--------GCACTCGCACTGTCCCAGACACCGTGCTGGTTGCAGTGAATGAAACAGGTTC--------CAGGCTCCCAGAACTCAGTGAGGTTGGCGAGCCGGGCCGGCACACAGAAACGCTGCTACAAACACGCAAACGTGCT-CCCCTCCATGCAGGGCAAACCCTCCT---------------CAGGGGCCCCTTTTCCTAGAATTTGGGCCCTTGTCCAGGCCTCACCTCCAGAAG-------AGTCTCCTTAAGCAGGAGGCTGAGAGGGCAGCGAGGCGGGGAGGGAAGGGGGACAGCCA-GTGTCAC--TGCAAGTCGCTTTATTTCTCCTGCGGAAGTCCAGCCCTC-----------------------------CCTCACTCCCCTAC-TCCCCGGCACTTCCAGCTTCCTCCCCGCAGCGGGTTA--------------ACACGTGCATTTGCCAAGAGCTCAGGAAGGGCGCGCTGTGAGCATCCAGCCAGC-----------TGAGGAGGAGGGGACTGTCCCCTGG------------------------GCAGCCACCCCGCTGCCACCTGAGGAAGCTACTTTGGGGTCCA----CCTGCATGCACGGTAAGCAGCACGTCC-----TTTCTTTTTCATTTTAAAATTGTTACATTG-CCCCGCTCAGCCCATCCTCTGTGCT----CTCCCCTCTCCAGCAGGTTCTGGGGTGCTGATACATATTACACACCTTTTGTGTGCTCAGAAGAAAAACTCAAAAAAAAGAGCTTTATAGA--CCACAAAGATCTACAAACCCCCAAAGTCCCTGATGGCCCAGTGAGAGAAAGGCCGCTGCTTTTTAAAACTGCACTTTGAAAATATGGAAATTGAAAATAAAAAATTACCTTCATCTCACCCCAGAGAGAACCAC---TGTTATTTAATAGATacacacacacacacacacacacacac------------------------------------------------------------------------------------------------------------acacacacacacacacacacaGAGGCACGTGCGCtattacaaattttggattatcctggatatggtccttttggaa---cccttttcccctttaataatcctaccatgtatatttgtttccccaattggcacatgtgctct s ponAbe2.chr1 226538443 1168 - 229942017 GAAGGAGCACC-----------AGGCCAGACCCACGCCCTGGGCTTCTTACGCACACAACCTTCATCTCCACAGCCACGGAGCAGCCTTGGCTTTCAGGCTTCCTAAAGCATGTTTCT--AAGAGATGAAAAGGAGTC--GTGTTCAAGCTCGTGGATTCCTTCTCAACACGTATAAAAcaatcgttgaacaaaccttcactgagca--------gcactcacactgtcccagacaccatactggttgcagtgaatgaaacaggttc--------caggctcccagaactcagtgaggttggcgagccgggcgggcacacagaAACGCTGCTACAAACATGCAAACGTGCT-CCCCTACATGCAGGGCGAACCCTCCT---------------CAGGGGCCCCTTTTCCTAGAATTTGGGCCCTTGTCCAGGCCTCACCTCCAGAAG-------AGTCTCCTTAAGCAGGAGGCTGAGAGGGCCGTGAGGCGGGGAGGGAAGGGGGACAGCCA-GTGTCAC--TGCAAGTCGCTTTATTTCTCCTGCAGAAGTCCAGCCCTC-----------------------------CCTCACTCCCCTAC-TCCCCGGTGCTTCCAGCTTCCTCCCCGCAGCAGGTTA--------------ACACGTGCATTTGCCAAGGGCTCAGGAAGGGTGCTCTGTGAGCATCCAGCCAGCTGA--GGAGGTTGAGGAGGAGGGGACTGTCCCCTGG------------------------GCAGCCACCCTGCTGCCACCTGAGGAAGCTACTTTGGGGTCCA----CCTGCATGCAGGGTAAGCAGCATGTCC-----TTTCTTTTTCATTTTAAAATTATTACATTGCCCCCGCTCAGCCCATCCTCTGTGCTCTCCCTCCCCTCTCCAGCAGGTTCTGGGGTGCAGATGTATATTACACACCTTTTGTGTGCTCAGAAGAAAAACTCAAAATAAACAGCTTTATAGA--CCACAAAGATCTACAAACCCCCAAAGTCCCTGATGGCCCAGTGAGAAAAAGGCCGCTGCTTTTTAAAACTGCACTTTGAAAATATGGAAATTGAAAATAAAAAATTACCTTCATCTCACCCCAGAGAGAACCAC---TATTATTTAATAGAT----------acacacacacacacac------------------------------------------------------------------------------------------------------------acacacacacacacacacacaGAGGCACATGCGCttttacaaattttggattatcctggatatggtccttttggaa---cccttttcccctttaataatcctaccatgtatatttatttccccaattggcacatgtgctct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140429188 1171 - 143122389 GAAGGAGCACCAGACCCACACAAGGCCAGACCCATGCCCTGGGCTTATTATGCACACAGCCTTGACCTCCACAGCCACGGAGCAACCTTGGCTTTCAGGCCTCCTAACGCCTGTTTCT--AAGAGATGAAAAAGAGTCGTGTGTTCAAGCTCATGGATTCCTTCTCAACATGTATAAAACAATCGTTGAACAGACCCTCACTGAG-A--------GCACTCGCACTGCCCCAGACACCGTGCTGGCTGCAGTGAATGAAACAGGTTC--------CAGGCTCCCAGAACTCAGTGAGGTTGGTGAGCCGGGCTGGCACACAGAAACGCTGCTACAAACACACAAACGTGCT-CCCATCCATGCAGGGCGAACCCTCCT---------------CAGGGACCCCTTTTCCTAGAATTTCGGCCCTTATCCAGGCCTCACCTCCGGAAG-------AGACTCCTTAGGCAGGAGGCTGAGAGGGCAGTGAGGCGGGGAGGGAAGGGGGACAGCCA-GCGTCAC--TGCAAGTCGCTTTATTTCTCCTGCGGAAGTCCAGCCCTC-----------------------------CCTCACTCCCCTACATCCCCGGCGCTTCCAGCTTCCTCCCCGCAGCAGGTTA--------------ACATGTGCATTTGCCAAGAGCTCGGGAAGGGCACGCTGTGAGCATCCAGCCAGCTGA--GGAGGTTGAGGAGGAAGGGACTGTCCCCTGG------------------------GCAGCCAACCTGCTACTACCTGAGGAAGCTACTTTGGGGTCCA----CCTGCATGCAGGGTGAGCAGCAGGTCC-----TTTGTTTTTCATTTTAAAATTATTACATTGCCCCCACTTAGCCCATCCTCTGTGCT----CTCCCCTCTCCAGCAGGTTCTGGGGTGCAGATATATATCACACACCTTTTGTGTGCTCAGAAGAGAAACTCAAAATAAACAGCTTTATAGA--CCACAAAGATCTACAAACCCCCAAAGTCCCTGATGGCCCAGTGAGGGAAAGGCCGCCGCTTTTTAAAACTGCACTTTGAAAATATGGAAATTGAAAATAAAAAATTACCTTCATCTCACCCCAGAGAGAACCAC---TATTATTTAATAGGT----------------acacacacac------------------------------------------------------------------------------------------------------------acacacacacacacacacacaGAGGCACGTGCGCTTTTACAAATTTTGGATTATCCTGGATATGGTCCTTTTGGAA---CCCTTTTCCCCTTTAATAATCCTACCATGTATATTTATTTCCCCAATTGGCACATGTGCTCT i nomLeu3.chr5 C 0 I 713 s rheMac3.chr1 17131102 1169 - 229590362 GAAGGAGCACA-----------AGGCCAGACCCATGCCCTGGGCCTATTAC--ACACAACCGTGACCGCCACAGCCATGGCTCAGCCTTGGTTTTCAGGCCTCCTAAAGCACGTTTCT--AAGAGATGAAAAAGAGTC--ATGTTCGAGCTCGTGGATTCCTTCTCAACATGTACAAAACAATCGCTGAACAAA-CCTCACTGAACA--------GCACTCGCACTGCCCCAGACACTGTGCTGGCTGCAGTGAATGAAACCGTTTC--------CAGGCTTCCAGGACTCCGTGAGGTTGGGGAGCCGGGGCGGCACACAGAAACGCTGCTGCAAACACACAAACGTGCT-CCCCTCCATGCAGGGCGAACCCTCCT---------------CAGGGGCCCCTTTTCCTAGAATTTGGGCCCTTAGCGAGGCCTCGCCTCCAGAAG-------AGTCCCCGTAAGAAGGAGGCTGAGAGGGCAGTAAGTCAGGGAGGGAACGGGGACAGCCA-GTGTTGCT-TGCAAGTCACTTTATTTCTCCTGTGGAAGTCCAGCCCTT-----------------------------CCTCACTCCCCTACACCCCCAAGGCTTCCAGCTT-CTTCCCGCAGCAGGCTGTTC----------CACACGTGCATTTGCCAAGAGCTCAGGAAGGGCGCACTGTGAGCATCCAGCCAGCTGA--GGAGGCTGAGGAGGAGGGGACTGTCCCCTGG------------------------GCAGCCACCCCGCTGCTACCTGAGGAAGCTACTTTGGGGTCCA----CCTGCATGCAGGATAAGCAGCATGTCC-----TTTGTTTTTCATTTTAAAATTATTACATTGCCCCCGCTCAGCCCATCCTCTGTGCT----CTCCGCTCTCCAGCAGGTTCTGGGGTGCAGATGTATATTACACACCTTTCGTGTGCTCAGAAGAAAAACTCAGAATAAAGGCCTTTATAGA--CCACAAAGATCTACAAACCCGCAAAGTCCCTGAAGGCCCAGTGGGAGAAAGTCTGCTGCTTTTT-AAACTGCACTTTGAAAATATGGGAATTGAAAATAAAAAATCACCTTCATCTCACTCCAGAGAGAACCAC---TATTATTTAATAGac--------acacacatacgcacacag----------------------------------------------------------------------------------------------------------acacacacacacacacacacacacaGGTGCATGCGCttttacaaattttggattatcctggatatggtccttttggaa---cccttttcctctttaataatcctaccatgtatatttatttccccaattggcacatgtgctct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223895055 1167 - 227556264 GAAGGAGCACA-----------AGGCCAGACCCATGCCCTGGGCCTATTAC--ACACAACCGTGACCGCCACAGCCATGGCTCAGCCTTGGTTTTCAGGCCTCCTAAAGCACGTTTCT--AAGAGATGAAAAAGAGTC--ATGTTCGAGCTCGTGGATTCCTTCTCAACATGTACAAAACAATCGCTGAACAAA-CCTCACTGAACA--------GCACTCGCACTGCCCCAGACACTGTGCTGGCTGCAGTGAATGAAACCGTTTC--------CAGGCTTCCAGGACTCCGTGAGGTTGGGGAGCCGGGGCGGCACACAGAAACGCTGCTGCAAACACACAAACGTGCT-CCCCTCCATGCAGGGCGAACCCTCCT---------------CAGGGGCCCCTTTTCCTAGAATTTGGGCCCTTAGCGAGGCCTCGCCTCCAGAAG-------AGTCCCCGTAAGAAGGAGGCTGAGAGGGCAGTAAGTCAGGGAGGGAACGGGGACAGCCA-GTGTTGCT-TGCAAGTCACTTTATTTCTCCTGTGGAAGTCCAGCCCTT-----------------------------CCTCACTCCCCTACACCCCCGAGGCTTCCAGCTT-CTTCCCGCAGCAGGCTGTTC----------CACACGTGCATTTGCCAAGAGCTCAGGAAGGGTGCACTGTGAGCATCCAGCCAGCTGA--GGAGGCTGAGGAGGAGGGGACTGTCCCCTGG------------------------GCAGCCATCCCGCTGCTACCTGAGGAAGCTACTTTGGGGTCCA----CCTGCATGCAGGATAAGCAGCATGTCC-----TTTGTTTTTCATTTTAAAATTATTACATTGCCCCCGCTCAGCCCATCCTCTGTGCT----CTCCGCTCTCCAGCAGGTTCTGGGGTGCAGATGTATATTACACACCTTTCGTGTGCTCAGAAGAAAAACTCAGAATAAAGGCCTTTATAGA--CCACAAAGATCTACAAACCCGCAAAGTCCCTGAAGGCCCAGTGGGAGAAAGTCTGCTGCTTTTT-AAACTGCACTTTGAAAATATGGGAATTGAAAATAAAAAATCACCTTCATCTCACTCCAGAGAGAACCAC---TATTATTTAATAGac--------acacacatacacacacag------------------------------------------------------------------------------------------------------------acacacacacacacacacacacaGGTGCATGCGCTTTTacaaattttggattatcctggatatggtccttttggaa---cccttttcctctttaataatcctaccatgtatatttatttccccaattggcacatgtgctct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16940475 1277 - 220367699 GAAGGAGCACA-----------AGGCCAGACCCATGCCCTGGGCCTATTACATACACAACCGTGACCGCCACAGCCCTGGCTCAGCCTTGGTTTTCAGGCCTCCTAAAGCACGTTTCT--AAGAGATGAAAAAGAGTC--ACGTTTGAGCTCGTGGATTCCTTCTCAACATGTACAAAACAATCGCTGAACAAA-CCTCACTGAGCA--------GCACTCGCACTGCCCCAGACACTGTGCTGGCTGCAGTGAATGAAACCGTTTC--------CAGGCTTCCAGGACTCCGTGAGGTTGGGGAGCCGGGCCGGCACACAGAAATGCTGCTGCAAACACACAAACGTGCT-CCCCTCCATGCAGGGCAAACCCTCCT---------------CAGGGGCCCCTTTTCCTAGAATTTGGGCCCTTAGCGAGGCCTCGCCTCCAGAAG-------AGTCCCCGTaagcaggaggctgagagggcAGTAAGTCAGGGAGGGAACGGGGACAGCCA-GTGTTGCT-TGCAAGTCACTTTATTTCTCCTGTGGAAGTCCAGccccc-----------------------------ccTCACTCGCCTACACCCCCGAGGCTTCCAGCTT-CTTCCCGCAGCAGGCTGTTC----------CACACGTGCATTTGCCAAGAGCTCAGGAAGGGCGCACTGTGAGCATCCAGccagctga--ggaggctgaggaggaagggacTGTCCCCTGG------------------------GCGGCCACCCCGCTGCTACCTGAGGAAGCTACTTTGGGGTCCA----CCTGCATGCAGGGTAAGCAGCATgtcc-----tttgtttttcattttaaaattattacattgCCCCCGCTCAGCCCATCCTCTGTGCT----CTCCCCTCTCCAGCAGGTGCTGGGGTGCAGATGTGTATTACACACCTTTCGTGTGCTCAGAAGAAAAACTCAGAATAAAGGCCTTTATAGA--CCACAAAGATCTACAAACCCGCAAAGTCCCTGAAGGCCCAGCGGGAGAAAGTCTGCTGCTTTTT-AAACTGCACTTTGAAAATAtgggaattgaaaataaaaaatcacctTCATCTCACTCCAGAGAGAACCAC---TATTATttaatagac--------acacacatatgcacacagagacatacagacacacacacacacacacagacacacacacagacacagacacacacacagacacacacacacacgcacacacacacacatgcacacacagacacacacacacacacagacacacacacacaggtgcgtGCGCTTTTACAAATTTTGGATTATCGTGGATATGGTCCTTTTGGAA---GCCTTTTCCTCTTTAATAATCCTACCGTGTATATTTATTTCCCCAATTGGCACATGTGCTCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82742861 1157 + 85787240 GAAGGAGCACA-----------AGGCCAGACCCACGCCCTGGGCCTATTACACACACAACCTTGACCTCCACAGCCATGGCTCAGCCTTGGTTTTCAGGCCTCCTAAAGCACGTTTCT--AAGAGATGAAAAAGAGTC--ATGTTCGAGCTCGTGGATTCCTTCCCAACATGTACAAAACAATCGCTGAACAAACCCTCACTGAACA--------GCACTCGCACTGCCCCAGACACTGTGCTGGCTGCAGTGAACGAAACCGTTTG--------CAGGCTTCCAGGACTCCGTGAGGTTGGGGAGCCGGGCCGGCACACAGAAACGCTGCTGCAAGCACGCAAACGTGCT-CCCCTCCATGCAGGGCGAACCCTCCT---------------CAGGGGCCCCTTTTCCTAGAATTTGGGCCCTTAGCGAGGCCTCGCCTCCAGAAG-------AGTCCCCGTAAGCAGGAGGCTGAGAGGGCAGTAAGTCAGGGAGGGAACGGGGACAGCCA-GTGTTGCT-TGCAAGTCACTTTATTTCTCCTGTGGAAGTCCAGCCCTC-----------------------------CCTCACTCCCCTACACCCCCGAGGCTTCCAGCTT-CTTCCCGCAGCA-GCTGTTC----------CACACGTGCACTTGCCAAGAGCTCAGGAAGGGCGCACTGTGAGCATCCAGCCAGCTGA--GGAGGCTGAGGAGGAGGGGACTGTCCCCTGG------------------------GCGGCCACCCCGCTGCTACCTGAGGAAGCTATTTTGGGGTCCA----CCTGCATGCAGGGTAAGCAGCATGTCC-----TTTGTTTTTCATTTTAAAATTATTACATTGCCCCCGCTCAGCCCATCCTCTGTGCT----CTCCCCTCTCCAGCAGGTGCTGGGGTGCAGGTGTATATTACACACCTTTCGTGTGCTCAGAAGAAAAACTCAGAATAAAGGCCTTTATAGA--CCACACAGATCTACAAACCCGCAAAGTCCCTGAAGGCCCAGTGGGAGAAAGTCTGCTGCTTTTT-AAACTGCACTTTGAAAGTATGGGAATTgaaaataaaaaatcaccttcatctcactccagagagaaccac---tattatttaatagac--------acatacatacg--cacag----------------------------------------------------------------------------------------------------------------------acacacacacacaggtgcgtgcgcttttacaaattttggattatcctggatatggtccttttggaa---cccttttcctctttaataatcctaccatgtatatttatttccccaattggcacatgtgctct i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14460579 1104 - 49578535 GAAGGAGCACCAGGCCCATGCAGGGCCAGACCCATGCCCTGGGCTTATTGTGCACATAACCTTGACCTCCGCAACCACTGACCAGCCTTGGCTCTCAAGCCTCCTAAGGCTTGTTTCT--AAGAGAT------GAGTC--GTCTTCAAGCCCTTGCCTTCCTTCTCAACATTTATCAAATGATCATTGAACAAACCCTGACTGCACA--------CCCCT-GCA------CAGTCACCCTGCTGCTTGCAGTGAACACAACAGATTC--------ATGGCTCCCAGCACTCAGTGAAGTTGGCAAGCCCAGCTGGCACACAGGAACCCTGCTACAGACACGAGAACATGCCGCCCCACCGGGCAGGGTGAGCTCTCAT---------------TGGGGGCCCCTTTTCCTAGAACATGGGCCCTTGGCCGGGCCTCACCTCCAGAAG-------ACTCTCCTTAAGGAGGAGGTTGAGAGGGCAGTGAGGCAGGGAGGGA--GGAGACAGCCA-GTGCCACT-TGCAGGTTGC-TTATTTCTCCTGCGGAAATTCAGTCCCC-----------------------------CCTCAGTCCCCTGCACCCCCGACTCTTCCAGCCTCCTCCCTGCAGCTGGTTGTTT----------AACAGGTGCATTTGCCAAGAGGTCAGGAACAG-GCACCGTGAACATCCAGCCAGCTGAGCGGGGGTGGAGGAGGGCTGGGCTGTCCCCTGG------------------------GCGGCCACCTCACTGCTACCCGAGGAAGCTACGTAGGGGTCTG----CCCGCATGCAGCGTAAGCAGGATGTCCCTTGTCTTGTTTTTCATTTAATAATAATTCCACTGC-----------------------CT----CT----------GCAGGTTCTGGCGAAGATGTATAAATGACACAGCTTTTGTGTGCTCAGAAGAAAAACTCAAAATAAAGGGCTTTATG--------CCAGATCTACAAACCCCCAAAGTCCCTGAAGACCCAGTGAGAGAAAGGCCTCTGCTTTTTAAAACTGGACTTTGAAAATATGGAAATTGAAAATTAAGAAGTTACCTAATCTCACCCCAAAGAGAAGCACTGTTATTATTTTATAGAC----------------ACGCACACAT------------------------------------------------------------------------------------------------------------------------------------GAGTGTGCACTTTTACACATTTGGGGTTTTCCTGGATGTGGTCCTTTTGAAA---GCCTTTCTCCCTTTAATAATCCAACCATG--TAGTTCTTTCCCCAGTCGGCAAGTGTGCTCT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36530865 1157 + 80974532 GTAAGAGCAGCAGGTCCACACTGGGTCACACTCATGCCCTTGGTTCAATATACACATAACCCTGACCTCC-CAACTACTGAGCAGCCTTGGCTTCCA-GCCTCCTGAAGCCTGTCTCTCCAAGAGATGAAACAGAGGA--GTGCTCGAGCCCTTGGCCCCCTACTGAATGTTGATAAAGCAATCACTGAACAGACCTTTATCGAGCATGGgctttgcccctgctttgcccc--------tgctG-CTGC--TGAATAAAACAGCTTCATGAACTTTGGGCTTCACAAGCTCGTTTAGGTTGGCAAGACTGGCTGGCAAACC-AAACCCCATTACAAACAGGCAAACATATG-CCC--CCTTGAAGGATGAAGTCCTCTCCCACCAACCCCTGACACACGCCCTCTTTTCTTGATTTTGGGCCCTTAGCCGGGCCTCACCTCCAGAAGGGTCTTAAGCCCCCGGGGTTAGGAGAGTGAGGGAG-----GGGGAGCGAGGGAGGGGGTCCAAGCACAGGTCACTCTGAAGGTCATTTCATTTCTGCTCTGGAAATTGACTCCCCAGGGCCCATCTGCTGGAGAGGAGGAGAGGCCCCAGGCCCCAGG-CCCCAGAGCCACTCAGCCAGGCCCCTGCAGGCCCCTGCTTGGGGGAGCCGCCTCCCTGCATTTGTCAAGAGCTCAAGAAGGA---GCTTAGAG------GCCAAGGGA--TGTAGAGAATGGGGTATGAGCTGTCCCCCAGAGCCACCTGGCCTCTCCAGCAGGCGAGGCGACCCGGAGGCCAACAGAAGAAGCTGCTTTGGTGCTCAGCATCCTGCGTGCTGGGGAA-CAGTTTGCCA-----TTTGATTTTCATTTCAAAATCATTAGGTTGCC----------------------------CTCCA-------------TCTTGGGCCCAGACATGTA-CACACACCTTGCGTGCGCTTATAAGAAACACTC-----AAAGGCCTTCCATGAGCCCACGGAGATCCACTCACTACCAAGGTCCTAGA-----------GAGGAAGGC--CTATTGTTC-AACCGGACTTTTGAAAAGCCAGAAATGGAAAATAAAAATAGCCTTTAATCTCACTC----------------CATTATTTTATAAAC------------------ACACACGG------------------------------------------------------------------------------------------------------------------------------------TCACATATACTTTCACCAATTCTTGATCA-CCGGGACGT-ACCCTTTGGGAATCTccttgttttccctgaataattgtcccctgcacatttact--cctgatcagctcatgtgctcc i canFam3.chr7 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e panTro4.chr1 225166866 1341 + 228333871 M a score=92969.000000 s hg38.chr1_KI270759v1_alt 410365 40 + 425601 gacaacatggcttttaacat-tgcagaatattccatcacat s ponAbe2.chr1 226539611 41 - 229942017 gacaacatcacttttaacgtctgcagaatattcaatcacgt i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140431072 40 - 143122389 gacaacatgacttttaacat-tgcagaatattccatcacat i nomLeu3.chr5 I 713 C 0 s rheMac3.chr1 17132271 41 - 229590362 gacaacatgacttttaacgtctgcagaatactccatcacgc i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223896222 41 - 227556264 gacaacatgacttttaacgtctgcagaatactccatcacgc i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16941752 41 - 220367699 GACAACATGACTTTTAACGTCTGCAGAATACTCCATCACGT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82744018 41 + 85787240 gacaacatgacttttaacgtctgcagaatactccatcacgc i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14461683 39 - 49578535 GACAACA-GACTTTTAATGCCTG-AGAACATTCCACCACGT i calJac3.chr19 C 0 C 0 s canFam3.chr7 36532022 40 + 80974532 tactac-tggcttttaacagctgcataatattccatcaggt i canFam3.chr7 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e panTro4.chr1 225166866 1341 + 228333871 M a score=1000100.000000 s hg38.chr1_KI270759v1_alt 410405 364 + 425601 agatcgaccgactctcatttatgcacggctactattccctgctcttggacca-taagattgcttccactttttc-acaattatcagttacactgttgaacataaatcaacacatattgaatataaatc---ttttttgt-----------taacctgacaagtccgtagggataaattcctggaagtaaaatagctataacaagaggaataaaagattacaaggcatgttacacacattgAGGGTGGCTGTGCTTTAAACCGTCCAACCTCAATGATGATTAGAAGCCTTCCCTGATAGCCCCAGATGGAGTCATCTCTTCCTCTCTTAACTTTTATttcattgattcacttatttattcattcTACAAATATACATTAA s panTro4.chr1 225168210 364 + 228333871 AGATCGACCGACTCTCATTCATGCACGGCTACTAttccctgctcctggacca-taagattgcttccactttttc-acaattatcagttacactgttgaacataaatcaacacatattgaatataaatc---ttttttgt-----------taacctgacaagtccgtagggataaattcctggaagtaaaatagctataacaagaggaataaaagattacaaggcatgttacacacattgAGGGTGGCTGTGCTTTAAACTGTCCAATCTCAATGATGATTAGAAGCCTTCCCTGACGGCCCCAGATGGAGTCATCTCTTCCTCTCTTAACTTTTATTTCATTGATTCACTTATTTATTCATTCTACAAATATACATTAA i panTro4.chr1 M 1341 C 0 s ponAbe2.chr1 226539652 375 - 229942017 agatcgaccgactctcatttatgcatggctactattccctgctcttggacca-taagattgcttccactttttc-acaattatcagttacactgttgaacacaaatcaacacatactgaatataaatc---tttttttttttttttttacttctctgacaagtccatagggataaattcctggaagtaaaatagctataacaagaggaataaatgattacaaggcattttacacacattgAGGATGGCTGTGCTTTAAACTGTCCAATCTCAATGATGATTAGAAGTCTTCCCTGATGGCCCCAGATGGAGTCACCTCTTCCTCTCTTAACTTTTATTTCACTGATTCACTTATTTATTCATTCTACAAATATACATTAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140431112 367 - 143122389 agatcgaccaactctcatttatgcacggctactattccctgctcttggacca-tgagactgcttctactgtttc-acaattatcagtcacactgttgaacataaatcaacacatattgaatataaatt---tttttttt-----ttttacttctctgacaagtccatagggataaattcctggaagtaaaatagctataacaagaggaataaaagattacaaggcattttacacacattgAGAGTGGCTGTGCTTTAAACTGTCCAATCTCA---ATGATTAGAAGCCTTCCCTGATGGCCCCAGATGGAGTCATCTCTTCCTCTCTTAACTTTTATTTCATTGATTCACTTACTTATTCATTCTGCAAATATACATTAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17132312 371 - 229590362 agaccaaccgacgctcgtctacgcacggctactgttccctgctcttgaaccagtaagactgcttc-actttttc-acgattatcagttacactgttgaacataaatcaacacatattgaatataaatc-tttttttttt-----tttaacctctctgacaagtccgtagggataaattcctggaagtaaaatagctataacaagaggaataaaagattacaaggcattttacacacatGGAGAGTGGCTGTGCTTTAAACTGTCCAATCTCAATGATGATTAGAAGCCTG-CCTGATGGCCCCAGATAGAGTCATCTCTTCCTCTCTTAACTTTTATTTCATTGATTCACTTATTTATTCATTCTACAAATATATATTAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223896263 372 - 227556264 agaccgaccgacgctcgtctacgcacggctactgttccctgctcttgaaccagtaagactgcttc-actttttc-acgattatcagttacactgttgaacataaatcaacacatattgaatataaatcttttttttttt-----tttaacctctctgacaagtccgtagggataaattcctggaagtaaaatagctataacaagaggaataaaagattacaaggcattttacacacatGGAGAGTGGCTGTGCTTTAAACTGTCCAATCTCAATGATGATTAGAAGCCTG-CCTGATGGCCCCAGATAGAGTCATCTCTTCCTCTCTTAACTtttatttcattgattcacttatttattcattCTACAAATATACATTAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16941793 372 - 220367699 AGACTGACCGACGCTCATCTACGCACAGCTACTGTTCCCTGCTCTTGAACCAGTAAGATTGCTTC-ACTTTTTC-ACGATTATCAGTTACACTGTTGAACACAAATCAACACATATtgaatataaatcttttttttttt-----tttaacctctctgacAAGTCCGtagggataaattcctggaagtaaAATAGCTATAACAAGAGGAATAAAAGATTACAAGGCATTTTACACACATTGAGAGTGGCAGTGCTTTAAACTGTCCAATCTCAATGATGATTAGAAGCCTT-CCTGATGGCCCCAGATAGAGTCATCTCTTCCtctcttaacttttatttcattgattcacttatttattcattctacaaatatacATTAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82744059 367 + 85787240 agaccgactgacgctcctctacgcacggctactgttcctcgctcttgaaccagtaagactgcttc-actttttc-acgattatcagttacactgttgaatataaatcaacacatattgaatatcaatc---tttttttt-----tttaacctctctgacaagtccgtagggataaattcctggaagtataatagctataacaagaggaataaaagattacaaggcattttacacacattgAGAGTGGCTGTGCTTTAAACTGTCCAATCTCAGTGATGATTAGAAGCCTT-CCTGTTGGCCCCAG--AGAGTCATCTCTTCCTCTCTTAACTTTTATttcattgattcacttatttattcattcTACAAATATACATTAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14461722 308 - 49578535 AGATGGACCGA-TCTCATTTACAC------------------------------------------ACATTTCC-ACAATTAACGGTTACACTATTGAACATAAACAAACACACACTGAATACAAGTC---TTTTTTTT-----------AATCCTGACAAGTCCCTAGGGAGAGATTCCTAGAAGTGAGATAGCTATAACAA---GAATAAACCATTACGAGGCATTTTACACACATTGAG--TGGCCATGCTTTAAACTGTCCAATCTGAATGGTGATTAGAAGCCTTCCCTGATGGCCCCAGAT--AGTCATCTCTGCCTCTC-------TTATGTCACCGATTCACTGATTTATTCATTCTACAAATATACATTAA i calJac3.chr19 C 0 C 0 s canFam3.chr7 36532062 276 + 80974532 agactggcca----tcatgtaggtgta------attccctgctgctagacct-tccagctgcttccatttttttggctataataaatgacactctag----------taaacatgttGAACAGGACAC-------------------------------------------------ACCCAGGACTAGGACA------------------------CATAAGGCATTTTATACAC--TGAGCACGGCCATATTTTGATCCATCCGCCCTAAGCAAGGCTCAGAAGCCTTCCCTGATGGTCCT-GAGACGGTCACCTTGTCCCCCGTAAGCGTGCATTTCACTGATTCA-------GCTCATTCCACAAATATATACTGA i canFam3.chr7 C 0 I 2454 e mm10.chr1 178939931 1707 + 195471971 I a score=1080403.000000 s hg38.chr1_KI270759v1_alt 410769 423 + 425601 AAAACTCTggccaggcacggtagctcacgcctgtaatcccagcactttgagaggccgaggcggggggatcacttgaggtcaggagttctagaccagcctggccaacgtggtgaaaccccctctctacaaaaaat-acaaaaattagctaggcatgatggcgcgtgccggtaatcccagctacttgggaggctgaggcacaaaaattgcttgaacccgggaggtggatattgcagtgagccga---gattgcaccactgcactacaccctgggcaa-agagcaagactaagtctcaaacaaacaaacaaacaaacaaaaaaaaaaAACTCCAACATGGGACAGTGTTCCTGTTGTAAGATGTGCC--------AAGTTCTTAGTATACACTTCATCATATTTTAAAGTAGGACGTGTTTATCTGTCCTTAAATATTA s panTro4.chr1 225168574 418 + 228333871 AAAACTCTggccaggcacggtagctcacgcctgtaatcccagcactttgagaggccgaggcggggggatcacttgaggtcaggagttctagaccagcctggccaacatggcaaaatcccctctctacaaaaaat-acaaaaattagctaggcatgatggcgcgtgccagtaatcccagctacttgggaggctgaggcacaaaaattgcttgaacccgggaggtggatattgcagtgagccga---gattgcaccactgcactccagcctgggcaa-agagcaagactaagtctcaaa-aaacaaa--aacaaacaaacaaaaaa--CTCCAACATGGGACAGTGTTCCTGTTGTAAGATGTGCC--------AAGTTCTTAGTATACACTTCATCATATTTTAATGTATGACATGTTTATCTGTCCTTAAATATTA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226540027 423 - 229942017 AAAGCTCTggccaggcgcggtacctcacgtctgtaatcccagcattttgagaggccgaggcggggggatcacttgaggtcaggagttctagagcagcccggccaacatggcgaaaccccgtctctacaaaaaat-acaaaaattagccaggcatgatggcgcatgcctgtagtcccagctacttgggaggctgaggcacaaaaattgcttgaactcaggaggtggatgttgcagtgagccaagatgattgcaccactgcactccagcctgggcaa-agggcaagacttcgtctcaaa-agaaaaa--aaaaaaaaaaaaaaagaaTCTCCAACATGGGACAGTGTTCCTGTTGTAAGATGCACC--------AAGTTCTTAGTATATACTTCATCATATTTCAATGTAGGACGTGTTTATCTGTCTTTAAATATTA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140431479 405 - 143122389 GAAGCTCTggccagatgcggtggctcacgcctgtaatcccagcac-ttgggaggccgaggcggggggatcacttgaggtga-gagttctagagcagcctggccaacatggtgaaaccctgtctctacaaaaaat-acaaaaattagctaggtgtgacggcgcgtgcctgtagtcccagctacttgggaggctgaggcacaaaaattgcttgaactcaggaggtggatgttgcagtgagccga---gattgtaccactgcactccagcctgggcaa-agagcaagacttcgtctcaaa-aaaaaaa---------------aagaaTCTCCAACATGGGACAGTGTTCCTGTTATAAGATGCACC--------AACTTCTTAGTATACACTTCATCGTATTTTAATGTAGGACGTGTTTATCTGTCTTTAAATATTT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17132683 405 - 229590362 GAAGCTCTggctgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggc--ggggatcacttgaggtcaggagttctagaccagcctggccaacatggcgaaaccccgtctctacaaaaaat-acaaaaattagctaggtgtgatggagcatgcctgtaatcccatccacttgggaggctgaggcacaagaattgcttgaacccaggaggtggatgttgcactgagccca---gattgcaccattacactccagcctgggcaacagagcaagacttcgtctc-----------------aaaaaaaaaaaaaTTCTCCAACATGGGACAGTGTTCCTGTTGTAAGATGTACC--------AGGTTCTTAGTATATCCTTCATCATATTTTAATGTAGGATATGTTTATCTGTCCTTAAATATTA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223896635 406 - 227556264 GAAGCTCTggctgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggc--ggggatcacttgaggtcaggagttctagaccagcctggccaacatggcgaaaccccgtctctacaaaaaat-acaaaaattagctaggtgtgatggagcatgcctgtaatcccatccacttgggaggctgaggcacaagaattgcttgaacccaggaggtggatgttgcactgagccca---gattgcaccattacactccagcctgggcaacagagcaagacttcgtctc----------------aaaaaaaaaaaaaaTTCTCCAACATGGGACAGTGTTCCTGTTGTAAGATGCACC--------AGGTTCTTAGTATATCCTTCATCATATTTTAATGTAGGATATGTTTATCTGTCCTTAAATATTA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16942165 413 - 220367699 Gaagctctggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgagga-gggggatcacttgaggtcaggagttctagaccagcctggccaacatggcgaaaccccgtctctacaaaaaat-acaaaaatgagctacgtgtgatggcgcatgcctgtaatcccatccacttgggaggctgaggcacaagaattgcttgaacccaggaggtggatattgcactgagccca---gattgcaccattgcactccagcctgggcaacagagcaagacttcatctcaaa-----aaa-----aaaaaaaaaaaaaattctccaacaTGGGACAGTGTTCCTGTTGTAAGATGCACC--------AGGTTCTTAGTATATCCTTCATCATATTTTAATGTAGGATATGTTTATCTGTCCTTAAATATTA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82744426 418 + 85787240 GAAGCTCTggctgggcgcggtggctcatgcctgtaatcccagcacttcgggacgccgagga-gggggatcacttgaggtcaggagttctaaaccagcctgaccaacatggcgaaaccccgtctctacaaaaaat-acaaaaatgagctaggtgtgatggcgcatgcctgtaatcccatcctcttgggaggctgaggcacaagaattgctggaacccaggaggtggatgttgcactgagccca---gatagcaccattgcactccagcctgggcaacagagcaagacttcatctcaaaaaaacaaa-----aacaaaaacaaaaaaaCTCCAACATGGGACAGTATTCCTGTTGTAAGATGCACC--------AGGTTCTTAGTATATCCTTCATCATATTTTAATGTAGGATATGTTTATCTGTCCTTAAATATTA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14462030 424 - 49578535 GAAGCTCTggccaggcgtggtggctcacggctgtaatcccagcactctgagaagcccagacagacagatcactgtgggtcaggagttcgagaccagcctggccagtatggggaaaccccatttctacagaaaataacaaaaatgagctgggtgtgatggtgcgtgcctataatcccagctacttgggcagctgaggcatgag-atcacttgaacccaggaggcagaggttgcagtgagccga---gatcacaccactgcactccagcctggatgacagagtgagactctgtctcaaa---aaaaa-----aaaaaaaaaaaagaaTCTCCGACATAGGACAGTGTGGCTATTGTAAGATGCACTACTGTAAGAGGTTCTTAGCGTATACCTCATCCCATTCTAATGCAGGCCGTGCGCATCGGTCCTTCAATACTA i calJac3.chr19 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I a score=283131.000000 s hg38.chr1_KI270759v1_alt 411192 125 + 425601 GGCATCA--------------ggctcacgcctgtaatcccggcactttgggaggccgaggtgggcagatcacaaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaa s panTro4.chr1 225168992 124 + 228333871 GGCATCA--------------ggctcacgcctgtaatcccagcactttgcgaggccgaggtgggcagatcacaaggtcaggagattgagaccatcctggctaacacagtgaaaccc-atctctactaaaaatacaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226540450 139 - 229942017 GGCATCAGTgccgggcgcggtggctcatgcccgtaatcccagcactttgggaggctgaggcgggcagatcatgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140431884 139 - 143122389 GGCATCAGggccgggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggaggatcacctggtcaggagatcgagaccatcctggtaaacacggtgaaaccccgtctctactaaaaatacaaaaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17133088 139 - 229590362 GGCACCAGGACTTggcgcagtggctaacacctgtaatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaa i rheMac3.chr1 C 0 I 228 s macFas5.chr1 223897041 139 - 227556264 GGCACCAGgactgggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16942578 139 - 220367699 GGTACcaggactgggcgcagtggctcacacctataatcccagcactttgggaggccgaggcaggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82744844 126 + 85787240 GGCACTGGggctgggcatggtggcttacacctgtaatcccagcactttgggaggctgaggcgggtg-------------ggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaa i chlSab2.chr25 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14462454 0 - 49578535 C a score=258968.000000 s hg38.chr1_KI270759v1_alt 411317 157 + 425601 cttagctgggtgtggtggcgggtgcctgtagtcccagctacttgg-aggctgagggaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcaccactgcactccagcctgggcgacagagcaagactctatctcaaaaaata s panTro4.chr1 225169116 158 + 228333871 cttagccaggagtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcgcaccactgcactccagcctgggcgacagagcaagactctatctcaaaaaata i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226540589 156 - 229942017 attagccaggtgtgctggcgggtgcctctggtcccagctactcgggaggctgag--acgagaatggcgagaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgagtgacagagtgagactctgtctcaaaaaaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140432023 158 - 143122389 attagccgggcatggtggcgggcgcctgtggtcccagctactccggaggctgagacaggagaatggcgtgaacccgggaggcggagcttgcagtgagcccagatcatgccactgcactccagcctgggcgacagagcaagactctgtttcaaaaaaca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223897180 158 - 227556264 attaacccagcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgagccgagattgcgccactgcactccagcctgggtgacagagcgagacactgtctttaaaaaaa i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16942717 158 - 220367699 attaacccagcatggtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggtgacagagcgagacactgtctttaaaaaaa i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82744970 158 + 85787240 attagcccagcgtggtggcaggtgcctgtagtcccagctacttaggagactgaggcaggagaatggcctgaacccgggaggcagagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagcgagactccatctctaaaaaaa i chlSab2.chr25 C 0 I 83 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14462454 0 - 49578535 C e rheMac3.chr1 17133227 228 - 229590362 I a score=-766.000000 s hg38.chr1_KI270759v1_alt 411474 6 + 425601 aa-----aaat s panTro4.chr1 225169274 6 + 228333871 aa-----aaat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226540745 6 - 229942017 aa-----aaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140432181 11 - 143122389 aacaaacaaac i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223897338 5 - 227556264 aa-----aaT- i macFas5.chr1 C 0 I 310 s papAnu2.chr1 16942875 5 - 220367699 aa-----aaa- i papAnu2.chr1 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14462454 0 - 49578535 C e rheMac3.chr1 17133227 228 - 229590362 I e chlSab2.chr25 82745128 83 + 85787240 I a score=-752.000000 s hg38.chr1_KI270759v1_alt 411480 14 + 425601 aaaaaataaattta s panTro4.chr1 225169280 7 + 228333871 aaa-------ttta i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226540751 3 - 229942017 aaa----------- i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140432192 5 - 143122389 aaa---------ca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223897653 14 - 227556264 aaaaaatatatata i macFas5.chr1 I 310 C 0 s papAnu2.chr1 16942880 14 - 220367699 aaaatatatatata i papAnu2.chr1 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14462454 0 - 49578535 C e rheMac3.chr1 17133227 228 - 229590362 I e chlSab2.chr25 82745128 83 + 85787240 I a score=982.000000 s hg38.chr1_KI270759v1_alt 411494 6 + 425601 aaaaaA s panTro4.chr1 225169287 6 + 228333871 aaaaaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226540754 4 - 229942017 --aaaa i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140432197 6 - 143122389 aacaaa i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223897667 4 - 227556264 --tata i macFas5.chr1 C 0 I 97 s papAnu2.chr1 16942894 4 - 220367699 --tata i papAnu2.chr1 C 0 I 95 s chlSab2.chr25 82745211 5 + 85787240 -acata i chlSab2.chr25 I 83 I 1 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14462454 0 - 49578535 C e rheMac3.chr1 17133227 228 - 229590362 I a score=2628.000000 s hg38.chr1_KI270759v1_alt 411500 3 + 425601 TAG s panTro4.chr1 225169293 3 + 228333871 TAG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226540758 3 - 229942017 aaC i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140432203 3 - 143122389 AAC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17133455 3 - 229590362 TAG i rheMac3.chr1 I 228 C 0 s macFas5.chr1 223897768 3 - 227556264 TAG i macFas5.chr1 I 97 C 0 s papAnu2.chr1 16942993 3 - 220367699 tag i papAnu2.chr1 I 95 C 0 s chlSab2.chr25 82745217 3 + 85787240 TAG i chlSab2.chr25 I 1 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14462454 0 - 49578535 C a score=282717.000000 s hg38.chr1_KI270759v1_alt 411503 96 + 425601 GCATCAGGAGGGTAGGAGCTCTTTTTATGGCTCCCTGTGTTTAACACAATGCTGGGCACAAAATCAGGTTAAGATTCAGAGGGTTTCGACAGCCAA s panTro4.chr1 225169296 96 + 228333871 GCATCAGGAGGGTAGGAGCTCTTTTTATGGCTCCCTGTGTTTAACACAATGCTGGGCACAAAATCAGGTTAAGATTCAGAGGGTTTCGACAGCCAA i panTro4.chr1 C 0 M 727 s ponAbe2.chr1 226540761 96 - 229942017 GCATCAGGAGGGTAGGAGCTCTTTTTATGGCTCTCTGTGGTTAACACAATGCTGGGCACAAAATCAGGTTAAGATTCAGAGGGTTTCGATAGCCAA i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140432206 96 - 143122389 GCATCAGGAGGGTAGGAGCTCTTTTTATGGCTCTCTGTGGTTAACACAATGCTGGGCACAAAACCAGGTTAAGATTCAGAGGGTTTCGATAGCCAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17133458 93 - 229590362 GCATCAGGAGGGTAGGAGCTCTTTTTATGGCTCTCTGTGGTTAACACAATGCTGGGCACAAAATCAAGTTAAGATTC---AGGTTTCGACGGCCAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223897771 93 - 227556264 GCATCAGGAGGGTAGGAGCTCTTTTTATGGCTCTCTGTGGTTAACACAATGCTGGGCACAAAATCAAGTTAAGATTC---AGGTTTCGACGGCCAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16942996 96 - 220367699 gcATCAGGAGGGTAGGAGCTCTTTTTATGGCTCTCTGTGGGTAACACAATGCTGGGCACAAAATCAGGTTAAGATTCAGAAGGTTTCGATGGCCAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82745220 96 + 85787240 GCATCAGGAGGGTGGGAGCTCTTTTTATGGCTCTCTGTGGTTAACACAATGCTGGGCACAAAATCAGGTTAAGATTCAGAAGGTTTCGATGGCCAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14462454 96 - 49578535 GTACCAGGAGGGTAGGGATGCTTTTGATGGCCCTCTGTGGTTAACACGGCGCTGGGCACAAAATCAGGTGAAGATTCAGAGGGTTTCCATAGCCAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I a score=947305.000000 s hg38.chr1_KI270759v1_alt 411599 428 + 425601 AGCTATTGAAGGGAATGGCATTTTATACACAGTATAGATAT-CCATACACTGGAAACACTTTTCTGGGGATTCTGACATCCATCTCAGCCCTTGCTGAGAACTCTTAGCTGAggggccatgaagcctgggtgctcgtgtgaaa----ctgcaacttgcagttgactttgagggagtctcagtgcgtctccaggctccatctcctcatctgtgtaagagaagtgaagcccaatctgtcctgcctagtttcccctgggtttgttctgaggatgaaagaagatgctgtgtgtagaaccaggtcataatctggtaagtgctcaacagacgtaaggTCCTGGGATAACATACACTTGTTTTGATAATTACA------------------ACAAGATTCCTCAGGCAGCCTTTACTTCTTTCCTAGACTGTGCCCGCTACACAGTTTCTTCATTCAG s ponAbe2.chr1 226540857 446 - 229942017 AGCTATCAAAGGGAATGGCATTTTATACACAGTACAGATAT-CCATACACTGGAAACACTTTTCTGGGGATTCTGACATGCATCTCAGCCCTTGCTGAGAACTCTTCGCTGAggggccatgaagcctgggtgctcgtttgaaa----ctgcaacttgcagttgacttcgagggagtctcagtgcatctccgggctccatctcctcatctgtgtaagagaattgaagcccaatctgtcctgcctagtttcccctgggcttgttctgaggatgaaagaagatgttgtgtgtagaaccaggtcatgacctggtaagtgctcaacagacgtaaggTGCTGGGATAAAATACACTTGTTTTGATAATTACAAGTGTATTTTTGATAATTACAAGATTCCTCAGGCAGCCTTTACTTCTTTCCTAGACTGTGCCCGCTACACAGTTTCTTCATTCAG i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140432302 428 - 143122389 AGCTATCAAAGGGAATGGCATTTTATACACAGTACAGATAT-CCATGCACTAGAAACACTTTTCTGGGGATTCTGACATACATCTCAGCCCTTGCTGAGAACTCTTAGCTGAggggccatgaagcctgggtgctcgtgtgaaa----ctgcaacttgcagttgactttgagggagtctcactgcatctccgggctccatctcctcatctgtgtaagagaagtgaagcccaatctgtcttgcctagtttcccctgggcttgttctgaggatgaaagaagatgctgcgtgtagaaccaggtcgtgacctggtaagtgctcaacagacgtaaggTGCTGAGATAACATACACCTCTTTTGATCATTACA------------------ACAAGACTCCTCAGGCAGCCTTTACTTCTTTCCTAGACTGTGCCCGCTACACAGCTTCCTCATTCAG i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17133551 429 - 229590362 AGCTATCAAAGGGAGTGGCATTTTACACACAGGATAGATATCCCATATGCTGGAAACACTTTTCTGGAGATTCTCACATGCATCTCAGCCCTTGCTGAGAACTCTTAGCTGAggggtcatgaaacctgggtgcttgtttgaaa----ctgcaacttgtagttgactttgagggagtctcagtgcatctccgggctccaaatcctcatctgtgtaagagaagtgaagcccagtctgtcttgcctagtttcccctgggcttgttctgaggatgaaagaagatgctgtgtgtagaaccaggtcataatccggtaagtactcaacagacataaggTGCTGGGATAACATACACTTGTTCTGATAATTAGA------------------ACAAGAGTCCTCAGGCAGCCTTTACTTCTTTCCTAGACTGTGCCTGCTGTACAGTTTCTTCATTCAG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223897864 429 - 227556264 AGCTATCAAAGGGAGTGGCATTTTACACACAGGATAGATATCCCATATGCTGGAAACACTTTTCTGGAGATTCTCACATGCATCTCAGCCCTTGCTGAGAACTCTTAGCTGAggggtcatgaaacctgggtgcttgtttgaaa----ctgcaacttgtagttgactttgagggagtctcagtgcatctccgggctccaaatcctcatctgtgtaagagaagtgaagcccagtctgtcttgcctagtttcccctgggcttgttctgaggatgaaagaagatgctgtgtgtagaaccaggtcataatccggtaagtgctcaacagacataaggTGCTGGGATAACATACACTTGTTCTGATAATTAGA------------------ACAAGAGTCCTCAGGCAGCCTTTACTTCTTTCCTAGACTGTGCCTGCTGTACAGTTTCTTCATTCAG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16943092 429 - 220367699 AGCTATCAAAGGGGGTGGCATTTTACACACAGGATAGATATCCCATATGCTGGAAACACTTTTCTGGAGATTCTCACATGCATCTCAGCCCTTGCTGAGAACTCTTAGCTGAGGGGTCATGAAACCTGGGTGCTTGTTTGAAA----CTGCAACTTGTAGTTGACTTTGAGGGAGTCTCAGTGCATCTCCGGGCTCCACATCCTCATCTGTGTAAGAGAAGTGAAGCCCAGTCTGTCTTGCCTAGTTTCCCCTGGGCTTGTTCTGAGGATGAAGGAAGATGCTGTGTGTAGAACCAGGTCATAATCCGGTAAGTGCTCAACAGACATAAGGTGCTGGGATAACATACACTTGTTCTGATAATTAGA------------------ACAAGAGTCCTCAGGCAGCCTTTACTTCTTTCCTAGACTGTGCCTGCTGTACAGTTTCTTCATTCAG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82745316 427 + 85787240 AGCTATCAAAGGGAGTGGCATTTTACACACAGGATAGATATCCCATATGCTGGAAACACTTTTCTGGAAATTCTCACATGCATCTCAGCCCTTGCTGAGAACTCTTAGCTGAggggtcatgaaacctgggtgctcgtttgaaa----ctgcaacttgtagttgactttgagggagtctcagtgcatctctgggctccaaatcctcatctgtgtaagagaagtgaagcccaatctgtcttgcctagtttcccctgggcttgttctgaggatgaaagaagatgctgtgtgtagaaccacgtcataatccggtaagtgctcaacagacataaggTGCT--GATAACATACACTTGTTCTGATAATTAGA------------------ACAAGAGTCCTCAGGCAGCCTTTACTTCTTTCCTAGACTGTGCCTGCTATACAGTTTCTTCATTCAG i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14462550 410 - 49578535 AGCTATCAAAGGGAATGGGACGTTACACACAGTAGGGGCAT-CTATACACTGGAAACATGTTTCTGGGGATTCTCACATGCATCTCAGCCCTTGCTGAG-ACTCTTAGATGAggagtcatgaaacctgggtgctgttttgaaactacctgcaacttgcagatgactttgagggagtctcagtgcacccctgggctccggctcctcatctgtgta------------------ctgacttgcccagtttcccctgggcctgttctgaggatggaggaagatgctgtgggtagaagcaggtcacagcctggtaagtgctcagcagacgt-GGGTGCTGGGATAACAGACAGTCGTTTTAATAATTGGA------------------ACCAGATTCCGCAGGTAGCC-TTACTTCTTTCCCAGACGGCGCCTGCTACA-AGTTCCTTCATTCAG i calJac3.chr19 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e panTro4.chr1 225169392 727 + 228333871 M a score=433633.000000 s hg38.chr1_KI270759v1_alt 412027 149 + 425601 CACCTGCCTCATTCTCTC---ATGttgttttttggagacagggtcttgctctgttgcccagactagagtgcagtggcacaatcatagctcactgcagtctcaaactcctgggctccagcgatcctcctgcctcagcctcacaggtagctggg s panTro4.chr1 225170132 152 + 228333871 CACCTGCCTCATTCTCTCTCTGtttttttttttggagacagggtcttgctctgttgcccagactagagtgcagtggcacaatcatagctcactgcagtctcaaactcctgggctccagcgatcctccttcctcagcctcacaggtagctggg i panTro4.chr1 M 727 C 0 s ponAbe2.chr1 226541303 151 - 229942017 CACCTGCCTCATTCTCTC-ATGttattttttttggagacagggtcttgctctgttgcccagactagagcgcagtggcacaatcatagctcactgcagtctcaaactcctgggctccagcgatcctcctgcctcagccttacaagtagctggg i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140432730 150 - 143122389 CACCTGCCTCATTCTCTC-ATGttat-ttttttggagacagggtcttgctttgttgcccagactagagtgcagtggcacaatcatagctcactacagtctcaaactcctggactccagcaatcctcctgcctcagcctcccaagtagctggg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17133980 151 - 229590362 CACCTGCCTCATTCTCTC-ATGTTACTGtttttggagacagggacttgctctgttgcccagactggagtgcagtggcacaattatagctcactgtagtctcagactcctgggctcaagcaatcctcctgcctcagcctcccaagtagctggg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223898293 151 - 227556264 CACCTGCCTCATTCTCTC-ATGTTACtttttttggagacagggacttgctctgttgcccagactggagtgcagtggcacaattatagctcactgtagtctcagactcctgggctcaagcaatcctcctgcctcagcctcccaagtagctggg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16943521 151 - 220367699 CACCTGCCTCATTCTCTC-ATGttactttttttggagacagggacttgctctgttgcccagactggagtgcagtggcacaattatagctcaatgtagtctcagactcctgggctcaagcaatcctcctgcctcagcctcccaagtagctggg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82745743 151 + 85787240 CACCTGCCTCATTCTCTC-ATGTTACtttttttggagacagggacttgctctgttgcccagactggagtgcagtggcacaattatagctcactgtagtctcagactcctgggttcaagcaatcctcctgcctcagcctcccaaatagctggg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14462960 149 - 49578535 CACCTGCCTCATTCGCTC-ATAttattgtttttagagac--ggtcttgctgtgttgcccagactggagggcagtggcccaatcacagctcactgccacctcagactcctgggctcaagccatcctcctgcttcagcctcccaagtagctcag i calJac3.chr19 C 0 I 102 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I a score=63307.000000 s hg38.chr1_KI270759v1_alt 412176 25 + 425601 actacaggcacgaaccaccacacct s panTro4.chr1 225170284 25 + 228333871 actacaggcacgaaccaccacacct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226541454 25 - 229942017 actacaggcacgagccaccacacct i ponAbe2.chr1 C 0 C 0 s nomLeu3.chr5 140432880 25 - 143122389 actacaggcacaaaccaccacacct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17134131 25 - 229590362 actacaggcatgaaccaccacacct i rheMac3.chr1 C 0 I 9357 s macFas5.chr1 223898444 25 - 227556264 actacaggcatgaaccaccacaccT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16943672 25 - 220367699 actacaggcatgaaccaccacacct i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82745894 25 + 85787240 actacaggcatgaaccaccacaccT i chlSab2.chr25 C 0 I 9678 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14463109 102 - 49578535 I a score=7923.000000 s hg38.chr1_KI270759v1_alt 412201 11 + 425601 ctctaattttt s panTro4.chr1 225170309 11 + 228333871 ctctaattttt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1 226541479 11 - 229942017 tgctaattttt i ponAbe2.chr1 C 0 N 0 s nomLeu3.chr5 140432905 11 - 143122389 tgctaattttt i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223898469 8 - 227556264 ---TGtttttt i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16943697 8 - 220367699 ---tgtttttt i papAnu2.chr1 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14463109 102 - 49578535 I e rheMac3.chr1 17134156 9357 - 229590362 I e chlSab2.chr25 82745919 9678 + 85787240 I a score=18512.000000 s hg38.chr1_KI270759v1_alt 412212 48 + 425601 taaaaaaatttttgg--tagagatggggtcttgctatgttgcccaggctg s panTro4.chr1 225170320 48 + 228333871 aaaaaaaattttttg--tagagatggggtcttgctatgttgcccaggctg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140432916 44 - 143122389 ------gtttgtttgttttgagacagagtctcgctttgtcacccaggctg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223898477 42 - 227556264 --------tttttttttttgagatggagtctcgctctgtcgcccaggttg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16943705 40 - 220367699 --------ttattttatttgagat-gagtctcgctctgtcgcccaggtt- i papAnu2.chr1 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14463109 102 - 49578535 I e rheMac3.chr1 17134156 9357 - 229590362 I e chlSab2.chr25 82745919 9678 + 85787240 I a score=131057.000000 s hg38.chr1_KI270759v1_alt 412260 293 + 425601 g-------------------------------tctcaaactcatggcctcaagcaatcatccctccttggcctcctgaaaggctggaaA-----------GCCACTGCATCTAGCCCTATTCAtt--ttctttctttccgagacagagtctctctctgttgcccaggctggagtgcagtggcacaatcttggctcactgcagcctctgcctcctggattcaagtgattc-ttgtgcctcagcctcctgagtagctgggatttcaggcaaccatcaccatgcccagc---------taattttt----atattttttgtag--agatggggtttagccatgttggccagactgg s panTro4.chr1 225170368 293 + 228333871 g-------------------------------tctcaaactcatggcctcaagcaatcatccctccttggcctcctgaaaggctggaaA-----------GCCACTGCATCTAGCCCTATTCAtt--ttctttctttccgagacagagtctctctctgttgcccaggctggagtgcagtggcgcaatcttggctcactgcagcctctgcctcctggattcaagtgattc-ttgtgcctcagcctcctgagtagctggcatttcaggcaaccaccaccatgcccagc---------taattttt----atattttttgtag--agatggggtttagccatgttggccagactgg i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140432960 285 - 143122389 gagtgcagtggcgcagtctcggctcactgcaagctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtagctgggaccacaggcgcctgccaccacacctggcta-atttttt--gtatttttagtaaagatggggtttcaccatgttagccaggatg-------------------------------gtctcgatctcctgacctc--gtgatccaccccaccttggcctcccaaagtgctgacacctc---------------------gc---------taactttttaaaaaattttttgtag--agatggggtcttgctatgttgcccaggctgg i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223898519 306 - 227556264 gagtgcagtggcatgatctcagctcactgcaagctccgcctcccgggttctccccattctcctgcctcagcctcccgagtagctgggactacaggtgcccaccacggc--ccggcta-atttttt--gtatttttagtagagat-gggtttcagtgtgttagccaggatg-------------------------------gtctcgttctcctaacctc--gtgatcc-gcccgcctcggcctcccaaagtgctggaattataggcatgagccaccgtgcccggccTT---ttgttgttgtt----gttgttgttgttgttagacggagtcttactttgccacccaggctgg i macFas5.chr1 C 0 I 31 s papAnu2.chr1 16943745 302 - 220367699 gagtgcagtggcatgatctcagctcactgcaagcttccgcCTCCGGGTTCtcccca-tctcctgcctcagcctcccgagtagctgggactacaggcgcccaccacggc--ctggcta-atttttt--gtatttttagtagagat-gggtttcagtgtgttagccaggatg-------------------------------gtctcgatctcctaacctc--gtgatcc-gcccgcctcagccttccaaagtgctggaattagaggcatgagccaccgtgcccggcctt------ttgttgtt----gttgttgttgttgttagacggagtcttactttgccacccaggctgg i papAnu2.chr1 C 0 I 9274 s calJac3.chr19 14463211 272 - 49578535 -------------------------------acctcagactcctgggctcaagccatcctcctgcttcagcctcccaagtagctgggactacaggcatgaaccaccatacctggcta-agtttttaaaaattttttgtagagatggggtctcactatgctgcccaggcca-------------------------------gtctcaaacgcatggcctcaagtgatca-tccttcctcagcctcctgaagggctggaa-----------AGCCACTCTGTCTGGCCCCAAtctttttttttt----tttttcctttctg--agatagagtctctctctgtcacccaggctgg i calJac3.chr19 I 102 I 15 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e rheMac3.chr1 17134156 9357 - 229590362 I e chlSab2.chr25 82745919 9678 + 85787240 I a score=27692.000000 s hg38.chr1_KI270759v1_alt 412553 77 + 425601 ----------------tcttaaactcctgacctcaggtgatccaccc------agctcctaaagtgctgggattacaggtgtgagccaccacgcctggc s panTro4.chr1 225170661 77 + 228333871 ----------------tcttaaactcctgacctcaggtgatccaccc------agctcctaaagtgctgggattagaggtgtgagccaccacgcctggc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140433245 72 - 143122389 ----------------tctcaaactcatggcctcaagcaatcatcccttcctggcctcctgaaaggctggaa-----------agccaccgcgtttggc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223898856 83 - 227556264 ----------------cctctgcctcctggattcaagagattcttgtgcctcagcctcctgagtagctgggatttcaggcaaccaccaccatgcccagc i macFas5.chr1 I 31 I 11432 s calJac3.chr19 14463498 99 - 49578535 tcttggcccactgcagcctccgctttctgagttcaagtgattcttgtgccttagcctcctgagtagctgggattacaggtgcccgccaccacgcccggc i calJac3.chr19 I 15 I 1637 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e rheMac3.chr1 17134156 9357 - 229590362 I e chlSab2.chr25 82745919 9678 + 85787240 I e papAnu2.chr1 16944047 9274 - 220367699 I a score=2439.000000 s hg38.chr1_KI270759v1_alt 412630 11 + 425601 cCCAttctttt s panTro4.chr1 225170738 11 + 228333871 cCCAttctttt i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140433317 11 - 143122389 cCTATTCGttt i nomLeu3.chr5 C 0 I 9286 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14463597 1637 - 49578535 I e rheMac3.chr1 17134156 9357 - 229590362 I e chlSab2.chr25 82745919 9678 + 85787240 I e papAnu2.chr1 16944047 9274 - 220367699 I e macFas5.chr1 223898939 11432 - 227556264 I a score=26459.000000 s hg38.chr1_KI270759v1_alt 412641 284 + 425601 aaaaatatcagtggcttccatctattagaagtaggttgggctatacatcacactatccctaaatcttactttcatgtggtttgtttaataattaattcccaataagtctcaggggagagttctgcaatatgtataaaactttggcaagatggcataTtaggaacagctctggtctgcagctcccagcgagatcgacacagaaggcgggtgatttctgcatttccgactgaggGAAATTGATATTagggctaatatcaagaatctacaaagaacttaaacaaaat s panTro4.chr1 225170749 284 + 228333871 aaaaatatcagtggcttccatctattagaagtaggttgggctatacatcacactatccctaaatcttactttcatgtggtttgtttaataattaattcccagtaagtctcaggggagagttctgcaatatgtataaaACTTCGGcaagatggcatattaggaacagctccggtctgcagctcccagcgagatcgacacagaaggcgggtgatttctgcatttccgactgaggGAAATTGATATTAGGGctaatatcaagaatctacaaagaacttaaacaaaat i panTro4.chr1 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e calJac3.chr19 14463597 1637 - 49578535 I e rheMac3.chr1 17134156 9357 - 229590362 I e chlSab2.chr25 82745919 9678 + 85787240 I e papAnu2.chr1 16944047 9274 - 220367699 I e macFas5.chr1 223898939 11432 - 227556264 I e nomLeu3.chr5 140433328 9286 - 143122389 I a score=4017.000000 s hg38.chr1_KI270759v1_alt 412925 27 + 425601 tacaag-aaaaaaacaaacaactccatc s panTro4.chr1 225171033 28 + 228333871 tacaagaaaaaaaacaaacaactccatc i panTro4.chr1 C 0 I 3352 s calJac3.chr19 14465234 27 - 49578535 TAGAGG-AAAGAGGAAAACATATCCATC i calJac3.chr19 I 1637 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e rheMac3.chr1 17134156 9357 - 229590362 I e chlSab2.chr25 82745919 9678 + 85787240 I e papAnu2.chr1 16944047 9274 - 220367699 I e macFas5.chr1 223898939 11432 - 227556264 I e nomLeu3.chr5 140433328 9286 - 143122389 I a score=-700.000000 s hg38.chr1_KI270759v1_alt 412952 2 + 425601 TA------------ s calJac3.chr19 14465261 14 - 49578535 TGTAGAAGCTGAAC i calJac3.chr19 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I e rheMac3.chr1 17134156 9357 - 229590362 I e chlSab2.chr25 82745919 9678 + 85787240 I e papAnu2.chr1 16944047 9274 - 220367699 I e macFas5.chr1 223898939 11432 - 227556264 I e nomLeu3.chr5 140433328 9286 - 143122389 I e panTro4.chr1 225171061 3352 + 228333871 I a score=248383.000000 s hg38.chr1_KI270759v1_alt 412954 83 + 425601 CTGCCTTGAGTGGGCAGTAGGCAAGCTGAGG-CCTGGGTTTCTAAGTGGTCGAGAGGAGGCTGGAGACCAGCAGGGGTCAGACG s panTro4.chr1 225174413 83 + 228333871 CTGCCTTGAGTGGGCAGTAGGCAAGCTGAGG-CCTGGGTTTCTAAGTGGTTGAGAGGAGGCTGGAGACCAGCAGGGGTCAGACG i panTro4.chr1 I 3352 C 0 s ponAbe2.chr1_random 35135566 83 + 35968885 CTGCCTTGAGTGGACAGTAGGCAAGCTGAGG-CCTGGGTTTCTAAGTGGTCGAGAGGAGGCTGGAGACCAGCAGGAGTCAGACA i ponAbe2.chr1_random N 0 C 0 s nomLeu3.chr5 140442614 83 - 143122389 CTGCCTTGAGTGGGCAGTAGGCCAGCTGAGG-CCTGGGTTTCTAGGTGGTCGAGAGGAGGCTGGAGACCAGCAGTGGTCAGATG i nomLeu3.chr5 I 9286 C 0 s rheMac3.chr1 17143513 83 - 229590362 CTGCCTTGAGTGGGTAGTAGGCAAGCTGAGG-TCTGGGTTTCTAAGTGGTCGAGAGGAGGCTGGAGGCCAGCAGGGGTCAGACG i rheMac3.chr1 I 9357 C 0 s macFas5.chr1 223910371 83 - 227556264 CTGCCTTGAGTGGGTAGTAGGCAAGCTGAGG-TCTGGGTTTCTAAGTGGTCGAGAGGAGGCTGGAGGCCAGCAGGGGTCAGACG i macFas5.chr1 I 11432 C 0 s papAnu2.chr1 16953321 83 - 220367699 CTGCCTTGAGTGGGCAGTAGGCAAGCTGAGG-TCTGGGTTTCTAAGTGATGGAGAGGAGGCTGGAGGCCAGCAGGGGTCAGACG i papAnu2.chr1 I 9274 C 0 s chlSab2.chr25 82755597 83 + 85787240 CTGCCTTGAGTGGGCAGTAGGCAAGCTGAGG-TCTGGGTTTCTAAGTGGTCGAGAGGAGGCCGGAGGCCAGCAGGGATCAGACG i chlSab2.chr25 I 9678 C 0 s calJac3.chr19 14465275 82 - 49578535 CTGCCTTGAGTGGGCAGCAGACAAGCTGGGGCCCTGGGATTCTGAGTGGTC-AGAGGAGGCTGGAG-CCAGCACGGGTCAGACG i calJac3.chr19 C 0 C 0 e mm10.chr1 178939931 1707 + 195471971 I e canFam3.chr7 36532338 2454 + 80974532 I a score=435825.000000 s hg38.chr1_KI270759v1_alt 413037 146 + 425601 CTGAGACGAGACAGATTTAACCCTCATCACAATTTTGCTCAAGTCCTGGGGTTCCTGCCCCACC---AGTTTCCTTTTCGGAAGCCTGAAAACATAAACCAGGTTTACCAACACCCTCAATTCGCAACCAGCCCCTTCTCTCCGGTGG--------A s panTro4.chr1 225174496 146 + 228333871 CTGAGACGAGACAGATTTAACCCTCATCACAATTTTGCTCAAGTCCTGGGGTTCCTGCCCCACC---AGTTTCCTTTTCGGAAGCCTGAAAACATAAACCAGGTTTACCAACACCCTCAATTCGCAACCGGCCCCTTCTCTCCGGTGG--------A i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35135649 145 + 35968885 CTGAGAGGAGACAGATTTAACCCTCATCACAATTTTGCTCAAGTCCTGGGGTTCCTG-CCCACA---AGTTTCCTTTTCGGAAGTCTGAAAACATAAACCAGGTTTATCAACACCCTCAATTCCCAACCGGCCCCTTCTCTCTTGTGG--------A i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140442697 146 - 143122389 CTGAGAGGAGACAGATTTAACCCTCATCACGATTTTGCTCAAGTCCTGGGGTTCCTGTCCCACG---AGTTTTCTTTTCGGAAGCCTGAAAACATAAACCAGGTTTACCAACATCCTCAATTCCCAACCGGCCCCTTCTTTCCTATGG--------A i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17143596 145 - 229590362 CTGAGAGGAGACAGATTTAACCCTCATCACAATTTTGCTCAAGCCCTGGGGTTCCTGCCCTACA---AGTTTCCTTTTCAGAAGCCTGAAAACATAAACCAGGTTTATCAACATCCTCAATTCCC-ACCGGCCCCTTCTCTCCTGTGG--------A i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223910454 145 - 227556264 CTGAGAGGAGACAGATTTAACCCTCATCACAATTTTGCTCAAGCCCTGGGGTTCCTGCCCTACA---AGTTTCCTTTTCAGAAGCCTGAAAACATAAACCAGGTTTACCAACATCCTCAATTCCC-ACCGGCCCCTTCTCTCCTGTGG--------A i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16953404 145 - 220367699 CTGAGAGGAGACAGATTTAACCCTCATCACAATTTTGCTCAAGCCCTGGGATTCCTGCCCTACA---AGTTTCCTTTTCAGAAGCCTGAAAACATAAACCAGGTTTACCAACATCCTCAATTCCC-ACCGGCCCCTTCTCTCCTGTGG--------A i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82755680 145 + 85787240 CTGAGAGGAGACAGATTTAACCCTCATCACAATTTTGCTCAAGCCCTGGGGTTCCTGCCCTACA---AGTTTCCTTTTCAGAAGCCTGAAAACATAAACCAGGTTTACCAACATCCTCAATTCCC-ACCGGCCCCTTCTCTCCTGTGT--------A i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14465357 145 - 49578535 CTGAGAGGAGGCAGATTTAACCCTCACCACAGTTTTGCTCAACAGCTGGG-TTCCTGCCCCACA---AGCTTCCTTTTCAGAAGCCTGAAAACATAGAGCGGGTTAACCAACACCCTCAATTCCCGACCGGCCCCTTCTTGCCTGCGG--------A i calJac3.chr19 C 0 C 0 s mm10.chr1 178941638 141 + 195471971 CTGAGAAACTACGGATTT----------ATAGTTTCCCACCACCCCTGGG-TTCCTGCATTGTGTGCATTTCCCCTCCTTGAATCCTGGAATGCTAACTTAAGTGT-----CACTCCTCATTCTTATTTGACCCGATCTCTCCCGGAGCCTGACCCA i mm10.chr1 I 1707 C 0 e canFam3.chr7 36532338 2454 + 80974532 I a score=221626.000000 s hg38.chr1_KI270759v1_alt 413183 80 + 425601 TGTGTTTGGGAAGCCAGGCATAGAGAATATTGCCATTGACCTCCTCCTGCTCCTTTCCTTGTCCCGCTTTATTAGCATCA s panTro4.chr1 225174642 80 + 228333871 TGTGTTTGGGAAGCCAGGCATAGAGAATATTGCCATTGACCTCCTCCTGCTCCTTTCCTTCTCCCGCTTTATTAGCATCG i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35135794 80 + 35968885 TGTGTTTGGGAAGCCAGGCATAGAGAATATTGCCATTGACCTCCTCCTGCTCCTTTCCTTCTCCCTCTTTATTAGCATCG i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140442843 80 - 143122389 TGTGTTGGGGAAGCCAGGCATAGAGAATATTGCCATTGACCTCCTCCTGCTCCTTTCCTTCACCCGCTTTATTAGCATCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17143741 80 - 229590362 TGTGTTTGGGAAGACAGGCATAGAGAATATTGCCATTCATCTCCTCCTGCTCCTTTCCTTCTCCCGCTTCATTAGCATCG i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223910599 80 - 227556264 TGTGTTTGGGAAGACAGGCATAGAGAATATTGCCATTCATCTCCTTGTGCTCCTTTCCTTCTCCCGCTTCATTAGCATCG i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16953549 80 - 220367699 TGTGTTTGGGAAGACAGGCATAGAGAATATTGCCATTCATCTCCTCCTGCTCCTTTCCTTCTCCCGCTTTATTAGCATCG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82755825 80 + 85787240 TGTGTTTGGGAAGACAGGCATAGAAAATATTGCCATTCATCTCCTCCTGCTCCTTTCCTTCTCCCGCTTTATTAGCATCA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14465502 58 - 49578535 TGTGTTTGGGAAGCCAGGGACAGAGAACATCGTCATTGA----------------------TTGCGCTTTACTAGCAGTG i calJac3.chr19 C 0 C 0 s mm10.chr1 178941779 58 + 195471971 TGT----------ACAGGGATGGAGAGGACACCCCTTTATCCTAACCACCTATTTACCTTC------------AGGGTTA i mm10.chr1 C 0 C 0 s canFam3.chr7 36534792 64 + 80974532 TATGTCTGGGGAGCCAGGGATGGAGG----------------CTTCCTCCCTAACTCCCTCTCCCgcaccagcagcagca i canFam3.chr7 I 2454 I 52 a score=81173.000000 s hg38.chr1_KI270759v1_alt 413263 29 + 425601 CATGAATTTGATGGGTGTGTTGCCGAA--GC s panTro4.chr1 225174722 29 + 228333871 CATGAATGTGATGGGTGTGTTGCCAAA--GC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35135874 29 + 35968885 CATGAATTTGATGGGTGTGTTGCCAAA--GC i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140442923 29 - 143122389 CAGGAATTTGATGGGTGTGTTGCCAAA--GC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17143821 29 - 229590362 CATGAATTTGACAGGTGTGCTGCCAAA--GC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223910679 29 - 227556264 CATGAATTTGACAGGTGTGCTGCCAAA--GC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16953629 29 - 220367699 CATGAATTTGACAGGTGTGCTGCCAAA--GC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82755905 29 + 85787240 CATGAATTTGACGGGTGTGTTGCCAAA--GC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14465560 29 - 49578535 CGTGAAATTTACGGGTGTGCTGCCGAA--GC i calJac3.chr19 C 0 C 0 s mm10.chr1 178941837 27 + 195471971 CA--GATTCGAT--GTGCGGTGCAGGATTGC i mm10.chr1 C 0 C 0 e canFam3.chr7 36534856 52 + 80974532 I a score=3278776.000000 s hg38.chr1_KI270759v1_alt 413292 985 + 425601 CAGAATAAGTAGTTTAGACG-----------GTGAGGGCAGCAGCAGCTCAGAGAAGGGAGCAGCTGAAAAACCTCAGGGCTTGTGCACCACCTCTTGAGGCCAGCCAGCCTTGCCCTGTCTCC--AGGCAGCTGTGCTCCTAAACCGCGACAAATGACTAAGAAATTT-CTGCTCAGGGGAGTCCTGAGGGAAGGAAGGTGCTCTTTCC--CTGCAGGTGCATTTGACGTCACTCAGGCACAG----------------------GGGGCCCCTCCC---------AGCAGCCTCCAG-----AAGCAGCCTCC------------------------------------------------------AGAGCCTG---GGT-CGGTGACAGCCC------------------------------------------------------GTCTAGTATTTAAGCATGATTCAGCCACCCTCCCTACTCCCGTGTAAATCCGTGGA-TATGCACGGAATC-CAGCTTCctctttctgcacatacacacatccttttgg--ct--at--ttctctggaggaccctgactaacacaGGCCACCGACCCTCCATCACTGTGGGCTTCCTGTTTCTGCAGTAAGCACTCCCTTTGGGAGAGTCCAATGAG-AAA--------AAAGGAAAGA-ACCTCATTAGGTCCCTCCACGTCAACACTGACTGTGTTAACCCTAATTACTGCACCTGAATTATTCTTTTCCAGTTGCAAAGAAGGAAATCTCTAAGGTCTTTTTTAAAACCTACAAAACTTCTAAAGAATGGTAAAATGGGAAGG-------CTTTTTTGCATTGGCAGGAGCATAAATAATTCCTGAGGGCATCTGAACTCCAACCAGGT----------CAGCCCAGCCCAGCTTC-CCCAACATCCCCCTTGCCAGGGAAGAGGCAGA-GAatagtaactcaagtttatagag--------actg-------------------tattgtt--gcctttgatcttcagcac---ca-ccccattgaggtaagcaTTAGCTCATACCTTTGGACAAGGGCAAGTCAGAAAGTGAGAGGGAAAGTGAGAAAGGCATTTG-GAAAAAACAGGGAGGAGGACTTGGTCATTGCTTC----ATTCatgtattcattgcacaaatatttattggctaccacaatgtgtcagctgtgg s panTro4.chr1 225174751 986 + 228333871 CAGAATCAGTAGTTTAGACG-----------GTGAGGGCAGCAGCAGCTCAGAGAAGGGAGCAGCTGAAAAGTCTCAGGGCTTGTGCACCACCTCTTGAGGCCAGCCAGCCTTGCCCTGTCTCC--AGGCAGCTGTGCTCCTAAACCACGACAAATGACTAAGAAGTTTTCTGCTCAGGGGAGTCCTGAGGGAAGGAAGGTGCTCTTTCC--CTGCAGGTACATTTGACGTCACTCAGGCACAG----------------------GGGGCCCCTCCC---------AGCAGCCTCCAG-----AAGCAGCCTCC------------------------------------------------------AGAGCCTG---GGT-TGGTGACAGCCC------------------------------------------------------GTCTAGTATTTAAGCATGATTCAGCCACCCTCCCTACTCCCGTGTAAATCCGTGGA-TATGCACGGAATC-CAGCTTCctctttctgcacatacacacatccttttgg--ct--at--ttctctggaggaccctgactaacacaGGCCACTGACCCTCCATCACTGTGGGCTTCCTGTTTCTGCAGTAAGCACTCCCTTTGGGAGAGTCCAATGAG-AAA--------AAAGGAAAGA-ACCTCATTATGTCCCTCCACGTCAACACTGACTGTGTGAACCCTAATTACTGCACCTGAATTATTCTTTTCCAGTTGCAAAGAAGGAAATCTCTAAGGTCTTTATTAAAACCTACAAAACTTCTAAAGAATGGTAAAATGGGAAGG-------CTTTTTTGCATTGGCAGGAGCATAAATAATTCCTGAGGGCATCTGAACTCCAACCAGGT----------CAGCTCAGCCCAGCTTC-CCCAACATCCCCCTTGCCAGGGAAGAGGCAGA-GAATAGTAACTCAAGTTTATAGAG--------ACTG-------------------TATTGTT--GCCTTTGATCTTCAGCAC---CA-CCCCACTGAGGTAAGCATTAGCTCATACCTTTGGACAAGGGCAAGTCAGAAAGTGAGAGGGAAAGTGAGAAAGGCATTTG-GAAAAAACAGGGAGGAGGACTTGGTCATTGCTTC----ATTCatgtattcattgcacaaatatttattggctaccacaatgtgtcagctgtgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35135903 993 + 35968885 CAGAATAAGTAGTTTAGACG-----------GTGAGGGCAGCAGCAGCTCAGAGAAGGGAGCAGCTGAAAAATCTCAGGGCTTGTACACCACCTCTTGAGGCCGGCCAGCCTTGCCCTGTCTCT--AGGTAGCTATGCTCCTAAACCACAACAAATGACCAAGAAGTTTTCTGCTCAGGGGAGTCCTGAGGGAAGGAAGGTGCTCTTTCC--CTGCAGGTGCATTTGACATCACTCAGGCACAG----------------------GGGGCCCCTCCC---------AGCAGCCTCCAG-----AAGCAGCCTCC------------------------------------------------------AGAGCCTG---GGT-CAGTAACAGCCC------------------------------------------------------GTCTAGTATTTAAGCATGATTCAGCCACCCTCCCTACTCCCGTGTAAATCTGTGGA-TATGCACAGAATC-CAGCTTCctctttctgcgcatacacacatccttttgg--ct--gt--ttctctggaggaccctgactaacacaGGCCACCGCCCCTCCATCACTGTGGGCTTCCTTTTTCTACAGTAAGCACTCCCTTTGGGAGAGTCCAATAAG-AAA--------AAAGGAAAGA-AACTCATTAGGTCCCTCCACGTCAACACTGACTGCGTGAACCCTAATTACTGCACCTGAATTATTCTTTTCCAGTTGCAAAGAAGGAAATCTCTAAGGTCTTTATTAAAACCTACAAAACTTCTAAAGAATGGTAAAATGGGAAGGCTTGAGTCTTTTTTGCATTGGCAGGAGCATAAATAATTCCTGAGGGCATCTGAACTCCAACCAGGT----------CAGCCCAGCCCAGCTTC-CCCAACATCCCCCTTGCCAAGGAAAAGGCAGA-GAATAGTAACTCAAGTTTATAGAG--------ACTG-------------------TATTGTT--GCCTTTGATCTTCAGCAC---CA-CCCCACTGAGGTAAGCATTAGCTCACGCCTTTGGACAAGGGCAAGTCAGAAGGTGAGAGGGAAAGTGAGAAAGGCATTTG-GAAAAAACAGGGAGGAGGACTTGGTTGTTGCTTC----ATTCatgtattcattgcacaaatatttattggctaccacaatgtgtcaggtgtgg i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140442952 980 - 143122389 CAGAATAAGTAGTTTAGACG-----------GTGAGGGCGGCAGCAGCTCAGAGAAGGGAGCAGCTGAAAAATCTCAGAGCTTGTGCACCACCTCTTGAGGCCAGCCAGCCTCGCCCTGTCTCC--AGGTAGCTGTGCTCCTAAACCACGACAAATGACTAAGACGTTTTCCGCTCAGGGGAGTCCTGGCGGAAGGAAGGTGCTCTTTCC--CTGCAGGTGCATTTGACATCACTCAGGCACAG----------------------GAGGTCCCTCCC---------------------------AGCAGCCTCC------------------------------------------------------AGAGCCTG---GGT-CGGTCACAGCCC------------------------------------------------------GTCTAGTATTTAAGCATGATTCAGCCGCCCTCCCTACTCCCATGTAAATCCGTGGA-TATGCACGGAATC-CAGCTTCctctttctgcacatacacacaacctttcgg--ct--gt--ttctctggaggaccctgactaacacaGGCCACGGCCCCTCCATCACTGTGGGCTTCCTTTTTCTCCAGTAAGCACTCCCTTTGGGAGAGTCCAATAAG-AAA--------AAAGGAAAGA-ACCTCATTAGGTCCCTCCACGTCAACACTGACTGTGTGAACCCTAATTACTGCACCTGAATTATTCTTTTCTAGTTGCAAAGAAGGAAATCTCTAAGGTCTTTATTAAAACCTACAAAACTTCTAAAGAATGGTAAAATGGGAAGGCTTGAGTCTTTTTTGCATTGGCAGGAGCATAAATAATTCCTGAGGGCATCTGAACTCCAACCAGGT----------CAGCCCAGCCCAGCTTC-CCCAACATCCCCCTTGCCAGGGAAGAGGCAGA-GAatagtaactcaagtttatagag--------actg-------------------tattgtt--gcctttgatcttcagcac---ca-ccccactgaggtaagcattagctcatccctttggacaagggcaagttagaaagtgagagggaaaatgaGAAAGGCATTTG-GGAAAAACAGGGAGGAGGACTTGGTTGTTGCTTC----ATTCatgtattcattgcacaaatatttattggccaccgcaatgtgtcaggtgtgg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17143850 998 - 229590362 CAGAATAAGCAGTTTAGACG-----------GTGAGTGCAGCAGCAGCTCAGAGAAGGGAGCGGCTGAAAAACCTCAGAGCTCGTGCACCACCTCTTGAGGCCAGTCAGCCTTGCCCCGTCTCC--AGGTAGCTGTGCTCCTCAACCACGACAAATGACTAAGAAGTTTTCTGCTCAGGGCAGTCCTGGGGGAAGGAAGGTGCTCTTTCC--CTGCAGGTGCATTTGACACCACTCAGGTGCGG----------------------GAGGCACCTCCC---------AGCAGCCTCCAG-----AAGCAGCCTCC------------------------------------------------------AGAGCCTG---GGT-CAGGGATAGCCC------------------------------------------------------GTCTAGTATTCAAGCATGATTCAGCCGCCCTCCCTACTCCCGTGTAAATCTGTGGA-TGTGCACGGAATC-CAGCTTCctctttctacaca-acacacatccctttgg--ct--gt--ttctctggaggacc----ctaacACAGGCCACCGCCCCTCCATCGCTGCGGGCTTCCTTTTTCTCCAGTAAGCACTCCCTTTGGAAGAGTCCAATAAG-AAC--------AAAGGAGAAA-ACCTCATTAGGCCCCTCCACATCAACACTGACTGCGTGAACCCTAATTACTGCACCTGAATTATTCTTTTCTAGTTGCAAAGAAGGAAATCTCTAAGGTCTTTATTAAAACCGACAAAACTTCTAAAGAATGGTGAAATGAGAAGGCTGGAGTCTTTTTTGCATTGGCAGGAGCATAAATAAGTCCTGAAGGCATCTGAACT-CAACCAGGTcagcccagcccagcccagcccagcTAC-CCCAACATCCGCCTTGCCAGGGAAGAGGAAGA-GAATAGTAACTCAGGtttacagag--------actg-------------------tattgtt--gcctttgatcttcagcac---ca-ccccactgaggtaagcattagctcatacctttggacaagggcaagtcagaatgtgagagggaaagtgaGACAGGCATTTGTAAAAAAACAGGGAGGAGGACTTGGTTGTTGTTTC----ATCCGTGTattcattgcacaaatatttactggctaccacaatgtgtcaggtgttg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223910708 998 - 227556264 CAGAATAAGCAGTTTAGACG-----------GTGAGTGCAGCAGCAGCTCAGAGAAGGGAGCGGCTGAAAAACCTCAGAGCTCGTGCACCACCTCTTGAGGCCAGTCAGCCTTGCCCCGTCTCC--AGGTAGCTGTGCTCCTCAACCACGACAAATGACTAAGAAGTTTTCTGCTCAGGGCAGTCCTGGGGGAAGGAAGGTGCTCTTTCC--CTGCAGGTGCATTTGACACCACTCAGGTGCGG----------------------GAGGCACCTCCC---------AGCAGCCTCCAG-----AAGCAGCCTCC------------------------------------------------------AGAGCCTG---GGT-CAGTGATAGCCC------------------------------------------------------GTCTAGTATTCAAGCATGATTCAGCCGCCCTCCCTACTCCCGTGTAAATCTGTGGA-TGTGCACGGAATC-CAGCTTCctctttctacaca-acacacatccctttgg--ct--gt--ttctctggaggacc----ctaacACAGGCCACCGCCCCTCCATCGCTGCGGGATTCCTTTTTCTCCAGTAAGCACTCCCTTTGGAAGAGTCCAATAAG-AAC--------AAAGGAGAAA-ACCTCATTAGGCCCCTCCACATCAACACTGACTGCGTGAACCCTAATTACTGCACCTGAATTATTCTTTTCTAGTTGCAAAGAAGGAAATCTCTAAGGTCTTTATTAAAACCGACAAAACTTCTAAAGAATGGTGAAATGAGAAGGCTGGAGTCTTTTTTGCATTGGCAGGAGCATAAATAAGTCCTGAAGGCATCTGAACT-CAAccaggtcagcccagcccagcccagcccagcTAC-CCCAACATCCGCCTTGCCAGGGAAGAGGAAGA-GAATAGTAACTCAGGTTTACAGAG--------ACTG-------------------TATTGTT--GCCTTTGATCTTCAGCAC---CA-CCCCACTGAGGTAAGCATTAGCTCATACCTTTGGACAAGGGCAAGTCAGAATGTGAGAGGGAAAGTGAGACAGGCATTTGTAAAAAAACAGGGAGGAGAACTTGGTTGTTGTTTC----ATCCGTGTattcattgcacatatatttactggctaccacaatgtgtcaggtgttg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16953658 995 - 220367699 CAGAATAAGCAGTTTAGACG-----------GTGAGTGCAGCAGCAGCTCAGAGAAGGGAGTAGCTGAAAAACCTCCGAGCTCGTGCACCACCTCTTGAGGCCAGTCAGCCTTGCCCCGTCTCC--AGGTAGCTGTGCTCCTCAACCACGACAAATGACTAAGAAGTTTTCTGCTCAGGGGAGTCCTGGGGGAAGGAAGGTGCTCTTTCC--CTGCAGGTGCATTTGACACCACTCAGGTGCGG----------------------GAGGCACCTCCC---------AGCAGCCTCCAG-----AAGCAGCCTCC------------------------------------------------------AGAGCCTG---GGT-CAGTGATAGCCT------------------------------------------------------GTCTAGTATTCAAGCATGATTCAGCCGCCCTCCCTACTCCCGTGTAAATCTGTGGA-TGTGCACGGAATC-CAGCTTCCTCTTTCTACACA-ACACACATCCTTTTGG--CT--GT--TTCTCT---GGACC----CTAACACAGGCCACCGCCCCTCCATCGCTGCgggcttcctttttctccagtaAGCACTCCCTTTGGAAGAGTCCAATAAG-AAC--------AAAGGAGAAA-GCCTCATTAGGCCCCTCCACATCAACACTGACTGCGTGAACCCTAATTACTGCACCTGAATTATTCTTTTCCAGTTGCAAAGAAGGAAATCTCTAAGGTCTTTATTAAAACCGACAAAACTTCTAAAGAACGGTAAAATGAGAAGGCTGGAGTCTTTTTTGCATTGGCAGGAGCATAAATAAGTCCTGAAGGCATCTGAACT-CAACCAggtcagcccagcccagcccagcccagctac-CCCAACATCCGCCTTGCCAGGGAAGAGGCAGA-GACTAGTAACTCGGGTTTACAGAG--------ACTG-------------------TATTGTT--GCCTTTGATCTTCAGCAC---CA-CCCCACTGAGGTAAGCATTAGCTCATACCTTTGGACAAGGGCAAGTCAGAATGTGAGAGGGAAAGTGAGACAGGCATTTGTGAAACAACAGGGAGGAGGACTTGGTTGTTGTTTC----ATCCGTGTATTCAttgcacaaatatttactggCTACCACAATGTGTCAGGTGTTG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82755934 974 + 85787240 CAGAACAAGCAGTTTAGACG-----------GTGAGTGCAGCAGCAGCTCAGAGAAGGGAGCAGCTGAAAAACCTCAGAGCTCGTGCACCACCTCTTGAGGCCAGTCAGCCTTGCCCCGTCTCC--AGGTAGCTGTGCTCCTCAACCATGACAAATGACTAAGAAGTTTTCTGCTCAGGGGAGTCCTGGGGGAAGGAAGGTGCTCTTTCC--CTGCAGGTGCATTTGACACCACTCAGGTGCGG----------------------GAGGCGCCTCCC---------------------------AGCAGCCTCC------------------------------------------------------AGAGCCTG---GGT-CAGTGATAGCCC------------------------------------------------------GTCTAGTATTCAAGCATGATTCAGCCGCCCTCCCTACTCCCGTGTAAATCTGTGGA-TATGCACGGAATC-CAGCTTCctctttctacaca-acacacatccttttgg--ct--gt--ttctctggaggacc----ctaacACAGACCACTGCCCCTCCATCACTGTGGGCTTCCTTTTTCTCCAGTAAGCACTCCCTTTGGAAGAGTCCAATAAGAAAA--------AAAGGAAAAA-ACCTCATTAGGCCCCTCCACGTCAACACTGACTGTGTGAACCCTCATTACTGCACCTGAATTATTCTTTTCTAGTTGCAAAGAAGGAAATCTCTAAGGTCTTTATTAAAACCTACAAAACTTCTAAAGAATGGTAAAATGAGAAGGCTGGAGTCTTTTTTGCATTGGCAGGAGCATAAATAAGTCCTGAAGGCATCTGAACT-CAACCAGGT----------CAGCCCAGCCCAGCTAC-CCCAACATCCGCCTTGCCAGGGAAGAGGCAGA-GAATAGTAACTCAGGtttac--ag--------actg-------------------tattgtt--gcctttgatcttcagcac---ca-ccccactgaggtaagcattaGCTCATACCTTTGGACAAGGGCGAGTCAGAAAGTGAGAGGGAAAGTGAGACAGGCATTTGGAAAAAAACAGGGAGGAGGACTTGGTTGTTGTTTC----ATTCGCGTattcattgcacaaatatttactggttaccacaatgtgtcaggtgttg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14465589 973 - 49578535 CTGAATCAGCAGTTCAGATG-----------GTAAGTGCGACAGCAGCTCAGAGAAGGGAGCAGCTGAAAAACCTTAGAGCTGGCACACCACCTC-TGATGACATCCAGCCTTGCCCTGTCTCC--AGGTGGCTGTGCTCCTAAACCATGACAAATGACTAGGAAGTTTTCTGCTCAGGGGAGTCCTGGGGGAAGGAAGATGCTTTCTCC--CTGCAGGTGCATCTGAAGGCACTCAGACA-------------------------GAGGCCCCTCCC---------TGCAGCCTCCAG------AGCCGTCG-C------------------------------------------------------GGGCTCTG---GGT-CGGTGACAGTC-------------------------------------------------------ATGTATTATTTAAGCACAATTCAGCCTCCCTCCCCA-TCCCATGTAAATTGGTTGC-TATGCACTGAATC-CAGCTTCCTGTttctacacatacacacatccttttgg--ctccat--ttctctggaggacc--agctaacacaGGCCACCACCCCTCCATCACTACAGGCTTCCTTTTTC-CTAGTAAGCACTCCCTTTGGGAGAGCCCAGTAAG-AAA--------AAAAGAAAAATACCTCATTAGGCCCTTCCACATCAACACGGACTGCGTGAACCCTAATTATTGCACCTGAATTATTCTTTTCTAGTTGCAAAGAAGGGAATCTCTAAGGTCTTTATTAAAACCTACAAAACCTCTAAAGAATGGTAAAATGAGAAGGCTTGAGTTCTTTTTGCACTGACAGGAACATAAATAAGTCCTGAGGCCATCTGGACTGCAACCAGGT----------GAGCCCAGCACAGCTT--CCCAACATCCCCCTTG-AAGGGAAGAGGCGGA-GAGCAGGGA--------GACGGTA--------CCGG-------------------TACCGCC--GCCTCTGAT-GTCAGCAC---CA--CCCGCTGAGGTAAGCATTAGCTCATGCCTTTGGCCAAGGGCGAGTTAGAAAGTGAGAGGGAAAGTGAGAAAGGCATTTG-GAGGAGACAGGGAGGAGGACTCGGCTGCTGGTTC----ATTCGTAcattcattgcacaaatatttattagctaccgcaatgtgtcagatgcgg i calJac3.chr19 C 0 I 477 s mm10.chr1 178941864 1056 + 195471971 TTTATGAAACATTTGAAAAGGAAGTGCGTACGTCAGAGCCACAGGAGCT-GGAGAAGCCA-CAGCTCAGAAACCTCAGGGCTT-CCCATAACACAGAAAGGTCATTCATGCCAGTCCTGACCCC--TGACAACTGTGCTCCT-GGCCATGG-GAATGGCGAAG---------GCTCAGGGGGCTCTGGGAGGAGGAAGAGCATGGTTTCT--GTGGCAGCGCACTTGCAGTTG-TCAGTGCTGT----------------------GATGCCCCCACCTCCATTGGTGGCTGGCTCAGGGTTTGGGATAATCTTCCGCTGTTATTTTCTTTATTTGTGTGTTGCGGGAGGTGGAGGCTTAGACCTGATAAGCACCTGTTTGGT-CACTGACTGGCA------------------------------------------------------TCCCAGCCTCTGAGCCTGAGTGGCCTGTC--CCCGACTCCGGTACAAGTCTATTTATTAAGTGCAGGGTCACTGtctccctgttctgcac--atatgcattctattgg--tt--gtacttctctggggacccttaactaacacaTG--ACTTCCCTTCCCTGACAGTGGATCTGCTCTTTCTCTAGTAAAAACTCCCCCTGGGAGAGCCCAGAAAG-GAAAGGGGGACAAAAGGAAAG-CCCTCATTAGGACCCTCCACCTGCATGGCCACTGCACGGACCCTAATTACTGCACCTGAGTTG--CTCTTCTGCTTGCAAAGGAGGGTGTCTCTAAGGTCCTTATTAAAACCCACGAAGCTTCTTAAGAATGGCAAAGTGGGAACACAGGAGCCTTGTTTGAGCTGACAGAAGCATAAATAGGTCCTGAGGGCAGCTGATCCCCACCCATAT---------CCTGCCTGACCCAGCTTCAGCTGATCTGCACCTTT---GAGGGGAGACCGATGAGGGGGGACTCTGGGGTGGAGGC--------TCTG-------------------ACTTGCCCAGTCTTTGATCCTGAGCTCTGGCA-GC------AGGGAAGGGCTGGCTGGAGC--TTAGTGTATGGAGAGTGGGAGGGAG-GAAGGGGAGTGGGAGAGAGCTGTG-GACACAGCAGGAGGGGGGG---GGGTG-TGCTTCAGTGACTCACACGCTCTTTGCTCAAGTG-TCAGCGATCCCTGCAGTGTGTCAGATG--- i mm10.chr1 C 0 C 0 s canFam3.chr7 36534908 1052 + 80974532 CCAAGCGCGCTGTGTAGACG-----------GCG---GCAGCCCCCGCTAGGGGAAGGGAGCCG----------------------------GCCCTGTGGTCCCCCGGCTTTCCCCTAGCTCCTGGGGTGACCCTGCCCCT------CCACAAATGA-TGGCAACCTTCCAGCTCAGGGT--TCCTGAGGGGAAGAAGCTCCCCCGCCCCGCCCCAGGCATGTCTTACATCAATGGGACACAGACTAGACAAGGCACTTGCTCCAGGAGACACTCTC---------TTCAGCCTCCAG------AGCCATTTCA------------------------------------------------------GGCTGCTG---GTCACGGTGACAGTCTCTCGATGCCCCCCAAacacacacacacacacacacacacacacacacacacaGAGCTCATTATTAACGCATGGAC--GGTGCCCTCCGTGCTCCCGCGTGACCCAATTGA-TGTGCAGGGAGTC-TA-CACCctccttccatatgtgtgcacctcctactggttct--gc--ttctctggggaacccctactgacacaGCCGACC-TCCCACTGTGACTGTGGGGCTCCTCTTCCTCTAATAAGAGCTCCCTTGGGGAGAACTCAATAAG-ACA--------AAAAGAAAAA-TCCTCATTAGGACCGTCCCCAAGAGCAGCGACTGCATGAACCCTAATTACTGTACCTGAATTATTCTTTCCTGGTTGCAAAGGAAGGAATCTCTAAGGTCCTTATTAAAACCTACGCAACATCTAAGGAATGGTAAATTGAGAATTCTTGTGTCTGTTTTGCATTGACAGGAGCATAAATAGGTCCTGAGGGCATCTGAACCCCAACCAGGT----------CAGCCCTGCACGACTTCATCCAACACATGGCCTGGAAAGGAAGAGGCAGT-GAGTGCTAActcatgtttatagagcacgttatactgtgctaagtgctttcatatttattatt--gcctttcatcttcagcac---cacccccactgaggtaagGATTAGCTCACACCTTTGGACAAGGACGAGTCAGAAAGTGAGAGGGAAGGTGGGAAAGGCATTTG-AAAAAAACAGGA---AGATCTTGGATGTCAA-------ACTCAAGcattcactgcacaaatatttactgcttaccacaatgtgtcagatag-- i canFam3.chr7 I 52 C 0 a score=1519906.000000 s hg38.chr1_KI270759v1_alt 414277 550 + 425601 tgctggaag-tggagagacaatagcaagtgagacagagaaggtccaaacctttacccaacggagtgtatagtccagCAAACATTTCCTGAAGGCCTGCACCTGGCAAGGCAC-----TGCTGGCAAAGCCCAAGAGTACAGCAA-CCCAGCTTAAAGGAGGGTGATCCAACTTTGAAAGCTGCcc---------cttctgtgagcgccctcaa----tccctcaagcttattctgcctcactaatgattgctc---tcccttccatg-gtcta---ttgtaccatctttctctccctattggcctgagagctcttccagggcaggaccactctcc----actcagcccaacacaatgtctggcgcacggtTCTTCAGGCACATTcatccaatgatgacctgcaatgagccgagcatggtgtcagcagctgaagcaacagagagggaagaaacccaggccccttcctccagggatgtggagtctag-tgggggagaaagataaagaaagaagcaactatTTTGATGTGATAAATTTC-----C-TGGGGAATGACTAAGTGCCAAGCTGTGCAGAAGAAGAAATGCTgg s panTro4.chr1 225175737 550 + 228333871 tgctggaag-tggagagacaatagcaagtgagacagagaaggtccaaacctttacccaacggagtgtagagtccagcaaacatttcctgaaggcctgcacctggcaaggcac-----tgctggcaaagcccaagagtacagcaa-cccagcttaaaggagggtGATCCAACTTTGAAAGCTGCcc---------cttctgtgagcaccctcaa----tccctcaagcttattctgcctcactaatgattgctc---tcccttccatg-gtcta---ttgtaccatctttctctccctattggcctgagagctcttccagggcaggaccactctcc----actcagcccaacacaatgtctggcgcacggtTCTTCAGGCAcattcatccaatgatgacctgcaatgagctgagcatggtgtcagcagctgaagcaacagagagggaagaaacccaggccccttcctccagggatgtggagtctag-tgggggagaaagataaagaaagaagcaactaTTTTGATATGATAAATTTC-----C-TGGGGAATGACTAAGTGCCAAGCTGTGCAGAAGAAGAAATGCTgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35136896 550 + 35968885 tgctggaag-tggagagacaatagcaagtgagacagacaaggtccaaacctttacccaacggagcgtatagtccagCAAACATTTCCTGAAGGCCTGCACGTGGCAAGGCAC-----TGCTGGCAAAGCCCAAGAGTACAGCAA-CCCAGCTTAAAGGAGGGTGATCCAACTTTGAAAGCTGCCC---------CTTCTGTGAGCGCCCTCAA----TCCCTCAAGCTTATTCTGCCTCACTAATGATTGCTC---TCCCTTCCATG-GTCTA---TTGTACTGTCTTTCTCTCCCTATTGGCCTGAGAGCTCTTCCAGGGCAGGACCACTCTCC----ACTCAGCCCAACACAATGTCTGGGGCATGGCTCTTCAGCCACATTCATCCAATGATGACCTGCGATGAGCCGAGCATGGTGTCAGCAGCTGAAGCAACAGAGAGGGAAGAAACCCAGGCCCCTTCCTCCAGGGATGTGGAGTCTAG-TGGGGGAGAAAGATCAAGAAAGAAGCAACTATTTTGATGTGATAAGTTTC-----C-TGGGGAATGACTAAGTGCCAAGCGGTGCAGAAGAAGAAATGCTgg i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140443932 550 - 143122389 tgctggaag-tggagagacaacagcaagtgagacagacaaggtccaaacctttacccaacggagcgtatagtccagCAAACACTTCCTGAAGGCCTGCACCTGGCAAGGCAC-----TGCTGGAAAAGCCCAAGAGTACAGCAA-CCTAGCTTAAAGGAGGGTGATCCAACTTTGAAAGCTGCCC---------CTTCTGTAAGCGCCCTCAA----TCCCTCAAGCTTATTCTGTCTCACTCATGATTGCTC---TCCCTTCCATG-GTCTA---TTGTACCATCTTTCTCTCCCTATTGGCCTGAGAGCTCTTCCAGGGCAGGACCACTCTCC----ACTCAGGCCAACACAATGTCTGGCGCACGGTTCTTCAGGCACATCCATCCAATGATGAACTGCGATGAGCCGAGCATGgtgtcagcagctgaagcaacagagagggaagaaacccaggccccttcctccagggatgtggagtctag-tgcgggagaaagataaagaaagaagcaactaTTCTGATGTGCTAAGTTTC-----C-TGGGGAATGACTAAGTGCCAAGCTGTGCAGAAGAAGAAATGCTgg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17144848 551 - 229590362 tgctggaag-tggggagagaacagcaaatgagacagacaaggtccaaacccttaccttatagagcgtatagtccagCAAACATTTCTTGAAGGCCTGCACCTAGCAAGGCAC-----TGCTGGCAAAGCCCAAGTGTACAGCAA-TCCAGCTTAAAGGAAGGTGATCCAACTTTGAAAGCTGCCC---------CTTCTGTGAGCGCCCTCAA----CCCCTCAAGCTTATTCTGCCTCACTCGTGATTGCTC---TCCCTTCCATG-GTCTA---TTGTATCGTCTTTCTCTCCCTATTGGCCTGAGAGCTCTTCCAGGGCAGGACCACTCTCC----ACCCAGCCCAACACAATGTCTGGCACCTGGTTCTTCAGGCACATTGATCCAAGGATGACCTGCAATGAGCCAAGCATGGTATCGACAGCTCAGGCGACAGAGAGGGAAGAAACCCAGGCCCCTTCCTCCAGGGATGTGGAATCCAGTTGGGGGAGAAAGATAAAGAAAGAAGCAATGACTTTGATGTGATACGTTTC-----C-TGGGGAATGACTAAGGGCCAAGCTGTGCAGAAGAAGAAATGCTgg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223911706 551 - 227556264 tgctggaag-tggggagacaacagcaaatgagacagacaaggtccaaacccttaccttatagagcgtatagtccagCAAACATTTCTTGAAGGCCTGCACCTAGCAAGGCAC-----TGCTGGCAAAGCCCAAGTGTACAGCAA-TCCAGCTTAAAGGAAGGTGATCCAACTTTGAAAGCTGCCC---------CTTCTGTGAGCGCCCTCAA----CCCCTCAAGCTTATTCTGCCTCACTTGTGATTGCTC---TCCCTTCCATG-GTCTA---TTGTATCGTCTTTCTCTCCCTATTGGCCTGAGAGCTCTTCCAGGGCAGGACCACTCTCC----ACCCAGCCCAACACAATGTCTGGCACCTGGTTCTTCAGGCACATTGATCCAAGGATGACCTGCAATGAGCCAAGCATGGTATCGACAGCTCAGGCGACAGAGAGGGAAGAAACCCAGGCCCCTTCCTCCAGGGATGTGGTATCCAGTTGGGGGAGAAAGATAAAGAAAGAAGCAATGACTTTGATGTGATACGTTTC-----C-TGGGGAATGACTAAGTGCCAAGCTGTGCAGAAGAAGAAATGCTgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16954653 550 - 220367699 TGCTGGAAG-TGGGGAGACAACAGCAAATGAGACAGACAAGGTCCAAACCCTTACCTTATAGAGTGTATAGTCCAGCAAACATTTCCTGAAGGCCTGCACCTAGCAAGGCAC-----TGCTGGCAAAGCCCAAGTGTACAGCAA-TCCAGCTTACAGGAAGGTGATCCAACTTTGAAAGCTGCCC---------CTTCTGTGAGCGCCCTCAA----CCCCTCAAGCTTATTCTGCCTCACTCGTGATTGCTC---TCCCTTCCATG-GTCTA---TTGTATCGTCTTTCTCTCCCTATTGGCCTGAGAGCTCTTCCAGGGCAGGAACACTCTCC----ACCCAGCCCAACACAATGTCTGGCGCCCGGTTCTTCAGGCACATTGATCCAAGGATGACCTGCAATGAGCCAAGCATGGTGTCAGCAGCTCAGGCGACAGAGAGGGAAGAAACCCAGGCCCCTTCCTCCAGGGATGTGGAGTCTAG-CGGgggagaaagataaagaaagaagcaaTGACTTTGATGTGATAAGTTTC-----C-TGGGGAATGACTAAGTGCCAAGCTGGGCAGAAGAAGAAATGCTGG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82756908 550 + 85787240 tgctggaag-tggagagacaacagcagatgagacagacaaggtccaaacccataccttacagagcatatagtccagCAAACATTTCTTGAAGGCCTGCACCTAGCAAGGCAC-----TGTTGGCAAAGCCCAAGTGTACAGCAA-TCCAGCTTAAAGGAAGGTGATCCAACTTTGAAAGCTGCCC---------CTTCTGTGAGCGCCCTCAA----CCCCTCAAGCTTATTCTGCCTCATTCGTGATTGCTC---TCCCTTCCATG-GTCTG---TTGTATCGTCTTTCTCTCCCTGTTGGCCTGAGAGCTCTTCCAGGGCAGGACCACTCTCC----ACCCAGCCCAACACAATGTCTGGCGCCTGGTTCTTCAGGCACATTGATCCAAGGATGACCTGCAATGAGCCAAGCATGGTGTCAGCAGCTCAGGCGACAGAGAGGGAAGAAACCCAGGCCCCTTCCTCCAGGGATGTGGAGTCTAG-TGGAGGAGAAAGATAAAGAAAGAAGCAATGACTTTGATGTGATAAGTTTC-----C-TGGGGAATGACTAAGTGCCAAGCTGTGCAGAAGAAGAAATGCTgg i chlSab2.chr25 C 0 C 0 s mm10.chr1 178942920 504 + 195471971 TTCCGGAAG-TGAAGAATCAACAGACAATAAGACAGTCACTGTCCAAACTCTTATTGGGCAGAA-ACATATTTT--------TTTTTTCAGTTCCTATCCCTAGCAAGGCACAGCAGTGATGACAAAGCTCCACC------CAC-CTTGGCTTCGTGGATGAAAATCC-GTTTTGAAAGGTGCCC---------CTCCTGAGGACTCCGTCAC----CCCCTCAGCCAT------CCCCTATAGTCA----------------CATG-GACTG----TGTGTCACCTGTC---CTCCGCTGGCCTGAGAGTACCTCAGAGGCAGGGTCATCTTTCGAATACCCAG--CGACTCA---TCT-GTGCCCACTGCTTAAAGAATATGTATCCACCGATGACCTGCTCAGAGCCC--CTTGGAGTCAATACCT---GTGACTGGGAGGGAAG--ACCCAGGCTTCTTCTCCAAAGGCTTGAGCGGCTAA-TGGAAGGGAAGGCT-GAGTAAGAAGCAACAAGGTC-ATGGACTCAGCTTCCAGGGC-TGGGGCACGA------GTCCAGCAGCACAGAGGAGGGCATGGAGA i mm10.chr1 C 0 C 0 s canFam3.chr7 36535960 514 + 80974532 -gccaggagttggggaaacagcagtgagcgaggcagacatggccTA--------------------TATAGTCTAGCAAACGTTTCTTCATTGCTTGC-CCTGGCAAAGCAC-----CATTGGCAAAGTCCGAGGACATGTCAAGCCCAGTGCAATGGAAGGCTCTCCAACTTTGAAAGGCACTCTCCTGGATGCCTTTCAAGGCACTCTCTAGTGCCACCTCTAGCCTA--CTGCTCCCATTGT-AGTGCTCACACCCTTTCCACGTGACTGCCCCTTTATCGTCTCTCTC-CCTCACTGACCTGAGAACTCCCCCAGGGCCAGAACATTCTCC----AGT-----CTACACAGTGCCTGGCCC-----TCTCAGGGCatatttgtcc-----------------agccgaagatgatgtcagaagctgagagtacaaaga-gaaagaaacccaggccccatcctccagagatttagagcctag-tgg-ggagaaagat----agataagcaatgattttgatgtgatatgtttt-----cagggggaatgatgggtactcgagcagcacagagaaggaaacgctag i canFam3.chr7 C 0 I 635 e calJac3.chr19 14466562 477 - 49578535 I a score=23725.000000 s hg38.chr1_KI270759v1_alt 414827 10 + 425601 ctgggcctgg s panTro4.chr1 225176287 10 + 228333871 ctgggcctgg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35137446 10 + 35968885 ctgggcctgg i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140444482 10 - 143122389 ctgggtctgg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17145399 10 - 229590362 ctgggactgg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223912257 10 - 227556264 ctgggactgg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16955203 10 - 220367699 CTGGGgctgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82757458 10 + 85787240 ctggggctgg i chlSab2.chr25 C 0 C 0 s mm10.chr1 178943424 10 + 195471971 CAGGTCTAGG i mm10.chr1 C 0 I 3200 e canFam3.chr7 36536474 635 + 80974532 I e calJac3.chr19 14466562 477 - 49578535 I a score=901735.000000 s hg38.chr1_KI270759v1_alt 414837 407 + 425601 tggttcacacttgtaatcccagcactttgggaagccaaggtgggaggattgatggaggccaggagtttgagatcagcctgagcaacagagcaagactccatctctac-acaaaattttaaaaattagccagctgtggtggcacacaactgtagtcccagcaacttgggaggctgatatgggaggattgcttgagccccggagttcctggctgcagaatg-gccactgccctccagcctgggcaacacagtgagacctagtctcaa------aaaaaaaaaaaaaaaaaaaaaaaaaaGCCAAAaaggagagaggag----------------ggaggagagaaaagaggagggaggaaggggaggtcaaggaaggaggaggaggaacatagctgtaatgggaagatagggaggaaaaaggaggatggaaga s panTro4.chr1 225176297 400 + 228333871 tggttcacacttgtaatcccagcactttgggaagccaaggtaggaggattgatggaggccaggagtttgagatcagcctgagcaacagagcaagactccatctctac-acaaaattttaaaaattagccagctgtggtggcacacaactgtagtcccagcaacttgggaggctgatatgggaggattgcttgagccctggagttcctggctgcagaatg-gccactgccctccagcctgggcaacacagtgagaccttgtctcaa------aaaaaaaaaaaaaaaaaaa-------GCCAAaaaggagagaggag----------------ggaggagagaaaagaggagggaggaaggggaggtcaaggaaggaggaggaggaacatagctgtaatgggaagacagggaggaaaaaggaggatggaaga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35137456 394 + 35968885 tggctcacacttgtaatcccagcactttgggaagccagggtggggggattgatggaggccaggagtttgagatcagcctgagcaacagagcaagactccatctctac-acaaaattttaaaaattagccaggtgtggtggcacacaactgtagtcccagcaacttgggaggctgatatgggaggactgcttgagcccaggcgttcctggctgcagcata-gtcactgccctccagcctgggcaacacagtgagatcttgtctcaa------aaaaaaaaaaaaaaa-----------GCCAAaaaggagagaggag----------------ggaggagagaaaggaggagggaggaaggggag--tcaggaaggaggaggaggaacatagctgtaatgggaagacagggaggaaaaaggaggacggaagA i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140444492 399 - 143122389 tggctcacacttgtaatcccagcactttgggaagccaaggtgggaggactgattgaggccaggagtttgagatcagcctgagcaacagagcaagactccatctctac-acaaaatgttaaaaattagccaggtgtggtggcgcacaactgtagtcccagcaacttgggaggctgatatgggaggattgcttgagcccaggagttcctggctgcagaatg-ggcactgccctccagcctgggcaacacagtgagaccttgtctcaa------aaaaaaaaaaaaaaaaCA--------GCCAAaaaggagagaggag----------------ggaggagagaaaggaggagggaggaaggggaggtcaaggaaggaggaagaggaacatagatgtaatgggaagacaggcaggaaaaaggaggacagaagA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17145409 406 - 229590362 tgactcacacttgtaatcccagcactttgggaagccaaggtgggaggactgattgaggccaggagtttgagatcagcctgagcaacagagcaagactccatctctac-aaaaaatgttaaaaattagccaggtgtggtggcgcacaactgtagtcccagcaacttgggaggctgatgtgggagga-tgcatgagcccaggagttcctggctgcagactgcaccactgccctccagcccgggcgacacagtgagaccttgtctcaa------aaaaataaaaataaaaaa--------gcaaaaaCggagagaggag---------agaggaggcaggaggaggaggagggaggaggaaggggaggtcgaggaaggaggaggaggaACATAGCTGTAATGGGAAAACAGGGAGGAAAATGGAGGACGGAAGA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223912267 406 - 227556264 tgactcacacttgtaatcccagcactttgggaagccaaggtgggaggactgattgaggccaggagtttgagatcagcctgagcaacagagcaagactccatctctac-aaaaaatgttaaaaattagccaggtgtggtggcgcacaactgtagtcccagcaacttgggaggctgatgtgggagga-tgcatgagcccaggagttcctggctgcagactgcaccactgccctccagcccgggcgacacagtgagaccttgtctcaa------aaaaataaaaataaaaaa--------gcaaaaaCggagagaggag---------agaggagggaggaggaggaggagggaggaggaaggggaggtcgaggaaggaggaggaggaACATAGCTGTAATGGGAAAACAGGGAGGAAAATGGAGGACGGAAGA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16955213 422 - 220367699 tgactcacacttgtaatcccagcactttgggaagccaaggtgggaggactgattgaggccaggagtttgagatcagcctgagcaacagagcaagattccatctctacaaaaaaatgttaaaaattagccaggtgtggtggcacacaactgtagtcccagcaacttgggaggctgatgtgggagga-tgcgtgagcccaggagttcctggCTGCAGactgcgccactgccctccagcccgggcaatacagtgagaccttgtctcaaaaaaataaaaataaaaataaaaaa--------gcaaaaacggagagaggagggaggaggaggaggagggaggaggaggaggagggaggaggaagaggaggtcgaggaaggaggaggaggaacatagctgtaatgggaaaacagggaggaaaaaggaggatggaaGA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82757468 382 + 85787240 tgactcacacttgtaatcccagcactttgggaagccaaggtgggaggactgattgaggccaggagtttgagatcagcctgagcaacagagcaagactccatctctac-aaaaaatgttaaaaattagccaagtgtggtggtgcacaactgtagtcccagcaacttgggaggctgatgtgggagga-tgcgtgagcccaggagttcctggctgcagactgggccactgccctccagcccgggcgacacagtgagaccttgtctca-------aaaaataaaaataaaaaa--------gcaaaaaCggagagaggag--------------------------------ggaggaggaaggggaggtcgaggaaggaggaggaggaACACAGCTGTAATGGGAAAACAGGGAGGAAAAAGGAGGATGGAAGA i chlSab2.chr25 C 0 C 0 e mm10.chr1 178943434 3200 + 195471971 I e canFam3.chr7 36536474 635 + 80974532 I e calJac3.chr19 14466562 477 - 49578535 I a score=6876.000000 s hg38.chr1_KI270759v1_alt 415244 2 + 425601 CA s panTro4.chr1 225176697 2 + 228333871 CA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35137850 2 + 35968885 CA i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140444891 2 - 143122389 CA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17145815 2 - 229590362 CA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223912673 2 - 227556264 CA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16955635 2 - 220367699 CA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82757850 2 + 85787240 CA i chlSab2.chr25 C 0 C 0 s canFam3.chr7 36537109 2 + 80974532 ca i canFam3.chr7 I 635 C 0 e mm10.chr1 178943434 3200 + 195471971 I e calJac3.chr19 14466562 477 - 49578535 I a score=500250.000000 s hg38.chr1_KI270759v1_alt 415246 154 + 425601 TGCTCAGATAtgtcttcatggctagatggtaagttctgactgggcagagacaatgtctgtttccttagtacctagcaaagggtcttgcactgggtagatattcactgtattttcagtggg-gaatgaat-------TCCCATAATAGGGAATCTGAAGCCCT s panTro4.chr1 225176699 154 + 228333871 tgcttagatatgtcttcatggctagatggtaagttctgactgggcagagataatgtctgtttccttagtacctagcaaagggtcttgcactgggtagatattcactgtattttcagtggg-gaatgaat-------TCCCACAATAGGGAATCTGAAGCCCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35137852 154 + 35968885 TGCTCAGATATGTCCTCATGGCTAGATGGTAAGTTCTGATTGGGCAGAGACAATGCctgtttccttagtacctagcaaagggtcttgcattgggtagatattcactgtattttcagtggg-gaatgaat-------TCCCATAATAGGGAAGCTGAAGCCCT i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140444893 154 - 143122389 tgctcagatatgtcttcatggctagacggtaagttctgactgggcagagacaatgtctgttcccttagtacctagcaaagggtcttgcattgggtagatattcaacgtattttcagtggg-gaatgaat-------TCCCATAACAGGGAATCTGAAGCCCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17145817 154 - 229590362 TGCTCAGATACATCTTCATGGctagacggtaagttccgactgggcagagacaatgtctatttccttagtacctagcaaagggtcttgcattgggtagacattcaatatattttcagtggg-gaatcaat-------TCCCATAATGGGGAATCTTAAGTCCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223912675 154 - 227556264 TGCTCAGATACATCTTCATGGCTAGACGGTAAGTTCCGACTGGGCAGAGACAATGTCTATTTCCTTAGTACCTAGCAAAGGGTCTTGCATTGGGTAGACATTCAATATATTTTCAGTGGG-GAATCAAT-------TCCCATAATGGGGAATCTTAAGTCCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16955637 154 - 220367699 TGCTCAGATACATCTTCATGGCTAGACGGTAAGTTCCGACTGGGCAGAGACAATGTCTATTTCCTTAGTACCTAGCAAAGGGTCTTGCATTGGGTAGACATTCAATATATTTTCAGTGGG-GAATCAAT-------TCCCATAATGGGGAATCTTAAGTCCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82757852 154 + 85787240 TGCTCAGATACATCTTCATGGctagacagtaagttcccactgggcagagacaatgtctgtttccttagtacctagcaaagggtcttgcattgggtagacattcaatatattctcagtggg-gaatgaat-------TCCCATAATGGGGAATCTGAAGTCCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14467039 153 - 49578535 TGCTCACATGCGGCCTCATGGCTAGATGGCAGATTCTGATTGGGCAGAGAC-ATGTCGGTTTCCTTAGTACCTAGCAAAGCGTCTTGCATTGGGTACACATTCAACATACTTTCAGTGGG-GAATGAAT-------TCTGCTAACAGGGAATCTGAAGGCCT i calJac3.chr19 I 477 C 0 s canFam3.chr7 36537111 159 + 80974532 tgcccag-tgtgtcttcactgctagacggtacatcctgagaggacaca-acagtgtctggctcaccag-acctagcacaacactttgcataggatagatattcaatatattttcagtgggtgaatgGGTTCATGAGTCACATAACAAGGACTCTAAAGTCTT i canFam3.chr7 C 0 C 0 e mm10.chr1 178943434 3200 + 195471971 I a score=485549.000000 s hg38.chr1_KI270759v1_alt 415400 159 + 425601 TAAAGAAAACCAGAATAGCAAAGAATAGAATAATGTTTACTCTTTTATATTGATTAGAAATGCATACTCCACATATAGAAAGTACAAACTC--------------------------------------AACAGAGTAAAATCT------------CAGAGAATG----------------------GTTTTTA--------------CACATATTTGCAGTGTG------ATC--AGTCAATGTT-CCTGAAA s panTro4.chr1 225176853 159 + 228333871 TAAAGAAAACCAGAATAGCAAAGAATAGAATAATGTTTACTCTTTTATATTGATTAGAAATGCATACTCCACATATAGAAACTACAAACTC--------------------------------------AACAGAGTAAAATCT------------CAGAGAATG----------------------GTTTTTA--------------CACATATTTGCAGTGTG------ATC--AGTCAATGTT-CCTGAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35138006 159 + 35968885 TAAAGAAAACCAGAATAACAAAGAATAGAATAATGTTTACTCTTTTATATTGATTAGAAATGCATACTCCACATATAGAAAGTACAAACTC--------------------------------------AACAGAGTGAAATCG------------CAGAGAATG----------------------GTTTTTA--------------CACACATTTGCAATGTG------ATC--AGTCAATGTT-CCTGAAA i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140445047 154 - 143122389 TAATGAAAACCAGAATAGCAA-----AGAATAATGTTTACTCTTTTATATTGATTAGAAATGCATACTCCACATATAGAAAGTACAAACTC--------------------------------------AACAGAGTGAAATCC------------CAGAGAATG----------------------GTTTTTA--------------CACATATTTGCAATGTG------ATC--AGTCAATGTT-CCTGAAA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17145971 158 - 229590362 TAAAGAAAACCAGAATAGCAAAGAACCAAATAATGTTTAATGTTTTATATTGATTAGAAATGCATACTCCACATATAGCAAGTACAGACTC---------------------------------------CCAGAGTGAAATCC------------CAGAGAATG----------------------GTTTTTA--------------CACTTATTTGCAATATG------ATC--AGTCAATGCT-CCTGAAA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223912829 158 - 227556264 TAAAGAAAACCAGAATAGCAAAGAACCAAATAATGTTTAATGTTTTATATTGATTAGAAATGCATACTCCACATATAGCAAGTACAGACTC---------------------------------------CCAGAGTGAAATCC------------CAGAGAATG----------------------GTTTTTA--------------CACTTATTTGCAATATG------ATC--AGTCAATGCT-CCTGAAA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16955791 158 - 220367699 TAAAGAAAACCAGAATAGCAAAGAACCaaataatgtttaatgttttatattgatTAGAAACACATACTCCACATATAGCAAGTACAGACTC---------------------------------------CCAGAGTGAAATCC------------CAGAGAATG----------------------GTTTTTA--------------CACTTATTTGCAATGTG------ATC--AGTCAATGCT-CCTGAAA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82758006 158 + 85787240 TAAAGAAAACCAGAATAGCAAAGAACCAAATAATGTTTAATGTTTTATACTGATTAGAAATGCATACTCCACATATAGCAAGTACAGACTC---------------------------------------CCAGAGTGAAATCC------------CAGAGAACG----------------------GTTTTTA--------------CACTTATTTGCAATGTG------ATC--AGTCAATGCT-CCTGAAA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14467192 152 - 49578535 TAAAG----CCAGAACAGCAAAGAACTGAATCACGTTTAATCTTTTATATGGATTAGAAACGCATACTCTCCATATAGGAAGTGCAAACTC-----------------------------------------AGAGTGAAGTCC------------AAGAGAATG----------------------GTTTTAA--------------CACGTAACTGCACTGTG------ATC--AGTCAATGTT-CCTGAAA i calJac3.chr19 C 0 I 5584 s mm10.chr1 178946634 212 + 195471971 TAACATAAAAGAGAAAACCAAAGAGCTGGATGttatttaatttttaatgttaatttaatatGTGTTTTGCATGTATGTAGAGAATAAACCT-----------------------------------------ACAGTGAAGTCCCATGACTGTGTGCAGGCAATGCAACTTTTGTTAGCTTTCTTCTGCTTTTACTTTGTTTTGTTTTCTCGGATTTGCAATGTGCAATGTGTCAAAGTCAGTGCT-CCTCAAA i mm10.chr1 I 3200 C 0 s canFam3.chr7 36537270 183 + 80974532 TAAAGCAA--------AGCAAAGAACTGGATAA----TAATCTTTTATGTTAGTTAGAAAGGCATACTCTACACATAGGACATACAAACCCttattttttttattttttattttttGGACATACAAACCCTTAAAGCAAAGTCC------------CAG---ATC----------------------AGTTTCA--------------TATGTACTTGAGATGTG------TTG--AATCAGTGTTCCCTGAAA i canFam3.chr7 C 0 C 0 a score=7569.000000 s hg38.chr1_KI270759v1_alt 415559 3 + 425601 GCT s panTro4.chr1 225177012 3 + 228333871 GCT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35138165 3 + 35968885 CCT i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140445201 3 - 143122389 CCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17146129 3 - 229590362 CCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223912987 3 - 227556264 CCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16955949 3 - 220367699 CCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82758164 3 + 85787240 CCT i chlSab2.chr25 C 0 C 0 s mm10.chr1 178946846 3 + 195471971 CCA i mm10.chr1 C 0 I 1 s canFam3.chr7 36537453 3 + 80974532 CCT i canFam3.chr7 C 0 C 0 e calJac3.chr19 14467344 5584 - 49578535 I a score=319843.000000 s hg38.chr1_KI270759v1_alt 415562 95 + 425601 AATAAGAATCCAGTAACCATTTAATATTAAATGTATGGAGAAGCTACCTAAATCCTAGGGTCATGTTGCTTGTCACTTGAGAGAACACCATTTTC s panTro4.chr1 225177015 95 + 228333871 AATAAGAATCCAGTAACCATTTAATATTAAATGTATGGAGAAGCTACCTAAATCCTAGGGTCATGTTGCTTGTCACTTGAGAGAACACCATTTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35138168 88 + 35968885 AATAAGAATCCAGTAACCATTT-------AATGTATGGAGAAGCTACCTAAATCCTAGGGTCATGTTGCTTGTCACTTGAGAGAACACCATTTTC i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140445204 94 - 143122389 AAAAAGAATCCAGTAACCATTTAATATTAAATGTACGGAG-AGCTAACTAAATCCTAGGGTCATGTTGCTTGTCACTTGAGAGAACACCATTTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17146132 95 - 229590362 AATATGAGTCCAATAACCATTTAATGTTAGATGTATGGAGAAGCTACTTAAATCCTAGGGTCATGTTGCTTGTCATTTGAGAGAACACCATTTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223912990 95 - 227556264 AATATGAATCCAATAACCATTTAATGTTAGATGTATGGAGAAGCTACTTAAATCCTAGGGTCATGTTGCTTGTCATTTGAGAGAACACCATTTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16955952 95 - 220367699 AATAGAAATCCAATAACCATTTAATATTAGATGTATGGAGAAGCTACTTAAATCCTAGGGTCATGTTGCTTGTCATTTGAGAGAACACCATTTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82758167 95 + 85787240 AATATAAATCCAATAACCATTTAATATTAGATGTATGGAGAAGCTACTTAAATCCTAGGGTCATGTTGCTTGTCATTTGAGAGAACACCATTTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14472928 95 - 49578535 aaaaaaaaTCCAATAACCATCTAATATTAAATGTATGAAAAAACTACCTAAATCCCAGGGTCATGTTGCTTGTCGCTTGACAGAACACAATTTTC i calJac3.chr19 I 5584 C 0 s mm10.chr1 178946850 94 + 195471971 CCTAAGAACCCATGTGTCATGTGGTATAGGACGTACAAGGAGGCCCCCCAAATCC-AGGCTCATGGTGATTGTAGCACACAGCaggaccactttc i mm10.chr1 I 1 I 110 s canFam3.chr7 36537456 88 + 80974532 CATTAGAACTCAGGACTAGTCCAATATTTAGTGTATGAAAAAGCCACCTAAATCCCAGGGTAATGTTGCTT-------AATATGGCACAATTTTC i canFam3.chr7 C 0 C 0 a score=277578.000000 s hg38.chr1_KI270759v1_alt 415657 88 + 425601 TTGTCTAACTCTTATTTTTA-TTCACATTCATGATCATACATGCATGTGCAGCCACACGAACATCAACATCAATATCTG--------------GTTTCTAGAG-- s panTro4.chr1 225177110 88 + 228333871 TTGTCTAACTCTTATTTTTA-TTCACATTCATGATCATACATGCATGTGCAGCCACATGAACATCAACATCAATATCTG--------------GTTTCTAGAG-- i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35138256 88 + 35968885 TTGTCCAACTCTTATTTTGA-TTCACATTCATGATCATACATGCATGTGCAGCCTCACGAACATCAACATCAATATCTG--------------GTTTCTAGAG-- i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140445298 88 - 143122389 TTGTCTAACTCTTATTTTTA-TTCACGTTCATGATCATACGTGCATGTGCGGGCACACAAACATCAACATCAATATCTG--------------GTTTCTAGAG-- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17146227 88 - 229590362 TTGTCTAACTCTTATTTTTA-TTCACAGTCGTGATCATACATGTATGTGCGGCCACACGAACACCAACATCAATATCTG--------------GTTTTTGGAG-- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223913085 88 - 227556264 TTGTCTAACTCTTATTTTTA-TTCACAGTCGTGATCATACATGTATGTGCAGCCACACGAACACCAACATCAATATCTG--------------GTTTTTGGAG-- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16956047 88 - 220367699 TTGTCtaactcttattttta-ttcacaGTCGTGATCATACGTGTATGTGCGGCCACACGAACACCAACATCAATATCTG--------------GTTTTTGGAG-- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82758262 88 + 85787240 TTGTCCAACTCTTATTTTTA-TTCACAGTCGTGATCATACATGTATGTGCGGCCACACAAACACCAACATCAATATCTG--------------GTTTCTGGAG-- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14473023 82 - 49578535 TTG------TCTTATTTTTA-TTCACATTCATGATCAGACACGCATGTGCAGCCCCATGAATATCGGTGTCGATACCTG--------------GTTTCTAGAG-- i calJac3.chr19 C 0 C 0 s canFam3.chr7 36537544 105 + 80974532 TTATCTAATTCTTATTTTTGCTTCACATTCATAATTGTAAACGCATGTGCAGCTGCATGAACGTCAGCATCAACATCTATCTATGATAGATTCtttttttgagag i canFam3.chr7 C 0 I 239 e mm10.chr1 178946944 110 + 195471971 I a score=71976.000000 s hg38.chr1_KI270759v1_alt 415745 22 + 425601 TAGATTCTCAAAAGGTAGGAAA s panTro4.chr1 225177198 22 + 228333871 TAGATTCTCAAAAGGTAGGAAA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35138344 22 + 35968885 TAGATTCTCAAAAGGTAGGAAA i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140445386 21 - 143122389 CAGATTCTCAAAAGGTAGG-AA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17146315 22 - 229590362 TAGATTCTCAAAAGGTAGGAAA i rheMac3.chr1 C 0 I 3 s macFas5.chr1 223913173 22 - 227556264 TAGATTCTCAAAAGGTAGGAAA i macFas5.chr1 C 0 I 3 s papAnu2.chr1 16956135 22 - 220367699 TAGATTCTCAAAAGGTAGGAAA i papAnu2.chr1 C 0 I 3 s chlSab2.chr25 82758350 22 + 85787240 TAGATTCTCAAAAGGTAGGAAA i chlSab2.chr25 C 0 I 3 s calJac3.chr19 14473105 22 - 49578535 GAGCGTCTCCAAAGGTAGGACG i calJac3.chr19 C 0 I 3 s canFam3.chr7 36537888 22 + 80974532 taGATTCTTACAAGGTTGGAAA i canFam3.chr7 I 239 I 3 e mm10.chr1 178946944 110 + 195471971 I a score=40654.000000 s hg38.chr1_KI270759v1_alt 415767 12 + 425601 ACCTGCCTTGAT s panTro4.chr1 225177220 12 + 228333871 ACCTGCCTTGAT i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35138366 12 + 35968885 ACCTGCCTTGAT i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140445407 12 - 143122389 ACCTGCCTTGAT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17146340 12 - 229590362 ACCTGCCTTAAG i rheMac3.chr1 I 3 C 0 s macFas5.chr1 223913198 12 - 227556264 ACCTGCCTTAAG i macFas5.chr1 I 3 C 0 s papAnu2.chr1 16956160 12 - 220367699 ACCTGCCTTAAG i papAnu2.chr1 I 3 I 313 s chlSab2.chr25 82758375 12 + 85787240 ACCTGCCTTAAG i chlSab2.chr25 I 3 C 0 s calJac3.chr19 14473130 12 - 49578535 ACATGCTTGAAT i calJac3.chr19 I 3 C 0 s mm10.chr1 178947054 12 + 195471971 ACCTTCTTTAAC i mm10.chr1 I 110 C 0 s canFam3.chr7 36537913 12 + 80974532 ATCTGCCTTACT i canFam3.chr7 I 3 C 0 a score=43242.000000 s hg38.chr1_KI270759v1_alt 415779 11 + 425601 AGCATCTTATA s panTro4.chr1 225177232 11 + 228333871 AGCATCTTACA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35138378 11 + 35968885 AGCATCTTACA i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140445419 11 - 143122389 AGCATCTTACA i nomLeu3.chr5 C 0 I 721 s rheMac3.chr1 17146352 11 - 229590362 AGCATCTTACA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223913210 11 - 227556264 AGCATCTTACA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16956485 11 - 220367699 agcatcttACA i papAnu2.chr1 I 313 C 0 s chlSab2.chr25 82758387 11 + 85787240 AGCATCTTACA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14473142 11 - 49578535 AGCATCTTACA i calJac3.chr19 C 0 C 0 s mm10.chr1 178947066 11 + 195471971 GGTGCCTTCTG i mm10.chr1 C 0 C 0 s canFam3.chr7 36537925 11 + 80974532 AGCATCTCAGA i canFam3.chr7 C 0 C 0 a score=3326545.000000 s hg38.chr1_KI270759v1_alt 415790 869 + 425601 AAACT----CAGCACATTACCACACACAGATGCATTCCAATTGTGAAATCTCTCAGGACGAAAAGTATTCTAT-------GGGTGATGCTGTTTTTCT----TTTTTTTCCCAGGTTTTGCTTATTAATGACCCAGCCAGGCTTTCTCACATTGTCTTGTGCTAGAGGCATTGACTCCTCACATCGGAAAAGTAAAATGCCTAGAAATGCCTAAAGGAGAAATAAAA----CAAAGTGGTTGATGCTT--------------------AGAAAGAAAAGTCA-TCCAATTCACTCACAGTGGGTCATGCTGCTTAACTCAGCCACAAGGAAATCCCAATTCATGCAAAAATAATTCTGTCTTCATTATTCTACAATCCAGTGGGTGTCTATGATAATTTGAGTACTCCTTTCTTGAAAAGAGAAGATCAGCACGTGTGTCTTTAACAATACATTCCTCT-TG-GTCTTGCTGAAATGCTGCATTAGTGACTGCATCTGATTGCACTGGAACCTGGCTCAGGCCCCCTACTGATGCTCTTACAGGCCATTATTAATGCGTACCCCTTCAGGGGCTGTAATTTGGGACTCAATTTGCCAT-AAAATTGTCCTAAGTGTCACCTTAGTAATCGGAGATCACATGACCCATGAAACACATTGAGATGAAAGATGGCACCTCTTGGAAATGAATGTCAAATTTTCCCCCATAGTAAAAAGGCACTAGCCATTGTATTTGCAGTGGATTTCACTGTGCCTT-GAGATGGGGAGGGGTTACAATG-----TTCCCTGTGCACATGCCTTGAGCTGGG-CCTGCTAGGCCTCAGACCAGAGCCTT-----------------CACCTACCACA------TACCCTGAAGAC------------------------------------------------------TCAACACACAGACTCTAGTAATTCAGCCATC------------------------------------------------CCTCAGGTGGATTTTGATGGTGCTTATC s panTro4.chr1 225177243 867 + 228333871 AAACT----CAGCACATTACAACACACAGATGCATTCCAATCGTGAAATCTCTCAGGACGAAAAATATTCTAT-------GGGTGATGCTGTTTTT------TTTTTTCCCCAGGTTTTGCTTATTAATGACCCAGCCAGGCTTTCTCACATTGTCTTGTGCTAGAGGCATTGACTCCTCACATCGGAAAAGTAAAATGCCTAGAAATGCCTAAAGGAGAAATAAAA----CAAAGTGGTTGATGCTT--------------------AGAAAGAAAAGTCA-TCCAATTCACTCACAGTGGGTCATGCTGCTTAACTCAGCCACAAGGAAATCCCAATTCATGCAAAAATAATTCTGTCTTCATTATTCTACAATCCAGTGGGTGTCTATGATAATTTGAGTACTCCTTTCTTGAAAAGAGAAGATCAGCACGTGTGTCTTTAACAATACATTCCTCT-TG-GTCTTGCTGAAATGCTGCATTAGTGACTGCATCTGATTGCACTGGAACCTGGCTCAGGCCCCCTACTGATGCTCTTACAGGCCATTATTAATGCGTACCCCTTCAGGGGCTGTAATTTGGGACTCAATTTGCCAT-AAAATTGTCCTAAGTGTCACCTTAGTAATCGGAGATCACATGACCCATGAAACACATTGAGATGAAAGATGGCACCTCTTGGAAATGAATGTCAAATTTTCCCCCATAGTAAAAAGGCACTAGCCATTGTATTTGCAGTGGATTTCACTGTGCCTT-GAGATGGGGAGGGGTTACAATG-----TTCCCTATGCACATGCCTTGAGCTGGG-CCTGCTAGGCCTCAGACCAGAGCCTT-----------------CACCTACCACA------TACCCTGAAGAC------------------------------------------------------TCAACACACAGACTCTAGTAATTCAGCCATC------------------------------------------------CCTCAGGTGGATTTTGATGGTGCTTATC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35138389 838 + 35968885 AAACT----CAGCACATTACCACACACAGATGCATTCCAATCGTGAAATCTCTCAGGACGAAAAGTATTCTAT-------GGGTGATGCTGTTTT-------TTTTTTCCCCGGGTTTTGCTTATTAATTACCCAGCCAGGCTTTCTCACATTGTCTTGTGCTAGAGGCATTGACTCCTCACATCTGAAAAGTAAAATGCCTAGAAATGCCTAAAGGAGAAATAAAA----CAAAGTGGTTGATGCTT--------------------AGAAAAAAAAGTCA-TCCAATTCACTCACAGTGGGTCATGCTTCTTAACTCAGCCACAAGGAAATCCCAATTCATGCAAAAATAATTCTGTCTTCATTATTCTACAATCCAGTGGGTGTCTATGATAATTTGAGTACTCCTTTCTTGAAAAGAGAAGATCAGCACATGTGTCTTTAATAATACATTCCTCT-TG-GTCTTGCTGAAATGCTACATTAGTGACTGCATTTGATTGCACTGGAACCTGGCTCAGGCCCCCTACTGATGCTCTTACAGGCCATTATTAATGCGTACCCCTTCAGGGGCTGTAATTTGGGACTCAATTTGCCAT-AAAATTGTCCTAAGTGTCACCTTAGTAATCAGAGATCACATGACCCATGAAACACATTGAGATGAAAGATGGCACCTCTTGGAAATGAATGTCAAATTTTCCCCCATAGTAAAAAGGCACTAGCCATTGTATTTGAAGTGGATTTCACTGTGCCTT-GAGATGGGGAGGGGCTACAATG-----TTCCCTACGCACATTCCTTGAGCTGGG-CCTACTAGGCCT---------------------------------------------------CCTGAAGAC------------------------------------------------------TCAACACACAGACTCTAGCAATTCAGCCATC------------------------------------------------CCTCAGGTGGATTTTGATGGTGCTTATC i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140446151 867 - 143122389 AAACT----CAGCACATTACCATGCACAGATGCATTCCAATCGTGAAATCTCTCAGGACAAAAAGTATTCTAT-------GGGTGATGCTGTTTTTTT----TTTTCCCCCCAGGTTTTGCTTATTAATGACCCAACCAGGCTTCCTCACATCGTCTTGTGCTAGAGGCATTGACTCCTCACATCTGAAAAGTAAAATGCCTAGAAATGCCTAAAGGAGAAATAAAA----CAAAGTGGTTGATGCTT--------------------AGAAAAAAAAGTCA-TCCAATTCATTCACAGTGGGTCATGCTTCTTAACTCTGCCACAAGGAAATCCCAATTCATGCAAAAATAAT--TGTCTTCATTATTCTACAATCCAGTGGGTGTCTATGATAATTTGAGTACTCCTTTCTTGAAAAGAGAAGATCAGCACATGTGTCTTTAATAATACATTCCTCT-TG-GTCTTGCTGAAATGCTACATTAGTGACTGCATTTGATTGCGCTGGAACCTGGCTCAGGCCCCCTACTGATGCTCTTACAGGCCATTATTAATGCGTACCCCTTCAGGGGCTGTAATTTGGGACTCAATTTGCCAT-AAAATTGTCCTAAGTGTCACCTTAGTAATCGGAGATCACATGACCCATGAAACACATTGAGATGAAAGATGGCACCTCTTGGAAATGAATGTCAAATTTTCCCCCATAGTAAAAAGGTACTAGCCATTGTATTTGAAGTGGATTTCACTGTGCCTT-GAGATGGGGAGGGGCTACAATG-----TTCCCTATGCACATTCCTTGAGCTGGG-CCTGCTAGGCCTCAGACCAGAGCCTT-----------------CACCTACCACA------TATCCTGAAGAC------------------------------------------------------ACAACACACAGACTCCAGTAATTCAGCCGTC------------------------------------------------CCTCAGGTGGATTTTGATGGTGCTTACC i nomLeu3.chr5 I 721 C 0 s rheMac3.chr1 17146363 869 - 229590362 AAACT----CAGCACATTACCATGCACAGATGCATTCAAATCATGAAATCTCTCAGAACGAAAAGTATTCTAT-------GGGTGATGCTGTTCCCCCC---CCCGCCCACCAGGTTTTGCTTATTAATGACCCAGCCAGGCTTTCTCACACTGTCTTGTGCTAGAGGCATTGACTCCTCACATCTGAAAAGTAAAATGCCTAGAAATGCCTAAAGGAGAAATAAAACAATCAAAGTGGTCGATGCTT--------------------AGAAAAAAAAGTCG-TCCAATTCCCTCACAGTGGGTCACGCTTCTTAACTCAGCCACAAGGAAATCCCAGTTCATGCAAAAATAATTCTGTCTTCATTATTCCACAATCCGGTGGGTGTCTATGATAATTTGAGTACTGCTTTCTTGAAAAGAGAAGATCAGCACATGTGTCTTTAATAATACATTCCTCT-TG-GTCTTGCTGAAATGCTACATTAGTAACTGCATTTGATTGCGCTGGAACCTGGCTCAGGCCCCCTACTGATGCTCTTACAGGCCATTATTAATGCGTACCCCTTCAGGGGCTGTAATTTGGGACTCAATTTGCCAT-AAAATTGTCCTAAGTGTCACCTTAGTAATCGGAGATCACATGACCCATGAAACACATTGAAATGAAAGATGGCACCTCTTGGAAATGAATGTCAAATTTTCCCCCATAGTAAAAAGGCACTAGCCATTGTATCTGAAGTGGATTTCACTGTGCCTT-GAGGTGGGGAGGGGTTACAATG-----TTCCCTATGCACATTCCGTGAGCGGGG-CCTACCAGGCCT-----CGTAGCCTT-----------------CACCTATCACA------TATCCCGAAGAC------------------------------------------------------TCAACACACAGACTCTGGTAATTCAGCCATC------------------------------------------------CCTCAGGTGGATTTTGATGGTGCTTATC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223913221 872 - 227556264 AAACT----CAGCACATTACCAAGCACAGATGCATTTAAATCATGAAATCTCTCAGAACGAAAAGTATTCTAT-------GGGTGATGCTGTTCCCCCCCCGCCCGCCCACCAGGTTTTGCTTATTAATGACCCAGCCAGGCTTTCTCACACTGTCTTGTGCTAGAGGCATTGACTCCTCACATCTGAAAAGTAAAATGCCTAGAAATGCCTAAAGGAGAAATAAAACAATCAAAGTGGTCGATGCTT--------------------AGAAAAAAAAGTCA-TCCAATTCCCTCACAGTGGGTCACGCTTCTTAACTCAGCCACAAGGAAATCCCAGTTCATGCAAAAATAATTCTGTCTTCATTATTCCACAATCCGGTGGGTGTCTATGATAATTTGAGTACTCCTTTCTTGAAAAGAGAAGATCAGCACATGTGTCTTTAATAATACATTCCTCT-TG-GTCTTGCTGAAATGCTACATTAGTAACTGCATTTGATTGCGCTGGAACCTGGCTCAGGCCCCCTACTGATGCTCTTACAGGCCATTATTAATGCGTACCCCTTCAGGGGCTGTAATTTGGGACTCAATTTGCCAT-AAAATTGTCCTAAGTGTCACCTTAGTAATCGGAGATCACATGACCCATGAAACACATTGAAATGAAAGATGGCACCTCTTGGAAATGAATGTCAAATTTTCCCCCATAGTAAAAAGGCACTAGCCATTGTATCTGAAGTGGATTTCACTGTGCCTT-GAGGTGGGGAGGGGTTACAATG-----TTCCCTATGCACATTCCGTGAGCGGGG-CCTACCAGGCCT-----CGTAGCCTT-----------------CACCTATCACA------TATCCCGAAGAC------------------------------------------------------TCAACACACAGACTCTGGTAATTCAGCCATC------------------------------------------------CCTCAGGTGGATTTTGATGGTGCTTATC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16956496 867 - 220367699 AAACT----CAGCACATTACCATGCACAGATGCATTCAAATCATGAAATCTCTCAGAACGAAAAGTATTCTAT-------GGGTGATGCTGTTCTCCC----CCCGCCCACCAGGTTTTGCTTATTAATGACCCAGCCAGGCTTTCTCACACTGTCTTGTGCTAGAGGCATTGACTCCTCACATCTGAAAAGTAAAATGCCTAGAAATGcctaaaggagaaataaaacaatcaaagTGGTCGAtgctt--------------------agaaaaaaaagtca-tccaaTTCCCTCACAGTGGGTCACGCTTCTTAACTCAGCCACAAGGAAATCCCAGTTCATGCAAAAATAATTCTGTCTTCATTATTCCACAATCCGGTGGGTGTCTATGATAATTTGAGTACTCCTTTCTTGAAAAGAGAAGATCAGCACATGTGCCTTTAATAATACATTCCTCT-TG-GTCTTGCTGAAATGCTACATTAGTAACTGCATTTGATTGCGCTGGAACCTGGCTCAGGCCCCCCACTGATGCTCTTACAGGCCATTATTAATGCATACCCCTTCAGGGGCTGTAATTTGGGACTCAATTTGCCAT-AAAATTGTCCTAAGTGTCACCTTAGTAATCGGAGATCACATGACCCATGAAACACATTGAAATGAAAGATGGCACCTCTTGGAAATGAATGTCAAATTTT-CCCCATAGTAAAAAGGCACTAGCCATTGTATCTGAAGTGGATTTCACTGTGCCTT-GAGGTGGGGAGGGGTTACAATG-----TTCCCTATGCACATTCTGTGAGCAGGG-CCTACCAGGCCT-----CGTAGCCTT-----------------CACCTATCACA------TATCCTGAAGAC------------------------------------------------------TCAACACACAGGCTCTGGTAATTCAGCCATC------------------------------------------------CCTCAGGTGGATTTTGATGGTGCTTATC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82758398 867 + 85787240 AAACT----CAGCACATTACCATGCACAGATGCATTCAAATCATGAAATTTCTCAGAACGAAAAGTATTCTAC-------GGGTGATGCTGTGCCCC-----CCCGCCCACCAGGTTTTGCTTATTAATGACCCAGCCAGGCTTTCTCACACTGTCTTGTGCTAGAGGCATTGACTCCTCACATCTGAAAAGTAAAATGCCTAGAAATGCCTAAAGGAGAAATAAAACAATCAAAGTGGTCGATGCTT--------------------AGAAAAAAAAGTCG-TCCAATTCCCTCACAGTGGGTCACGCTTCTTAACTCAGCCACAAGGAAATCCCAGTTCATGCAAAAATAATTCTGTCTTCATTATTCCACAATCCGGTGGGTGTCTATGATAATTTGAGTACTCCTTTCTTGAAAAGAGAAGATCAGCACATGTGTCTTTAATAATACATTCCTCT-TG-GTCTTGCTGAAATGCTACATTAGTAACTGCATTTGATTGCGCTGGAACCTGGCTCAGGCCCCCTACTGATGCTCTTACAGGCCATTATTAATGCGTACCCCTTCAGGGGATGTAATTTGGGACTCAATTTGCCAT-AAAATTGTCCTAAGTGTCACCTTAGTAATCGGAGATCACATGACCCATGAAACACATTGAAATGAAAGATGGCACCTCTTGGAAATGAATGTCAAATTTTCCCCCATAGTAAAAAGGCACTAGCCATTGTATCTGAAGTGGATTTCACTGTGCCTT-GAGGTGGGGAGGGGTTACAATG-----TTCCCTATGCACATTCCTTGAGCGGGG-CCTACCAGGCCT-----CGTAGCCTT-----------------CACCTATCACA------TATCCTGAAGAC------------------------------------------------------TCAACACACAGGCTCTGGTAATTCAGCCATC------------------------------------------------CCTCAGGTGGATTTTGATGGTGCTTATC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14473153 853 - 49578535 AAACT----CAGCACATGATTGTGCACAGATGCATTCAAATCGTGAAATCTCTCAGAATGGAAAGTATTCTAT-----------------------------CTTTCCCCCCAGGTTTTGCTTATTAATGACCCAGCCAGGCTTTCTCATACTGTCTTGTGCTAGAGGCATTGACTCCTCACATGTGAAAAATAAAATTCCTAGAAATGCCTAAAGAAGAAATAAAACAATCAAAGTGGTTGATGCTT--------------------AGAAAAAAAGGTCATTCCAATCCACTCA-AGTGGGCCGTGCTTCTTAACTCAGCCACAAGGAAATCCCAATTCATGCAAAAGTAATTCTGTCTTCATTATTCCACAGTCCAGTGGGTGTCTATGATAATTTGAGTACTCCTTTCTTGAAAAGAGAAGATCAGCACATGTGTCTTTAATAATACATTCCTCT-TG-GTCTTGCTGAAATGCTACATTAGTAACTGCGTTTGATTGCGCTGGAACCTGTCTCAGGCCCCCTACTGATGCTCTTACAGGCCATTATTAATGCGTACCCCTTCAGGGGCTGTAATTTGGGACTCAATTTGCCAT-AAAATTGTCCTAAGTGTCACCTTAGTAATCGGAGATCACATGACCCATGAAACACATTGAAACGAAAGATGGCACCTCTTGGAAATGAATGTCAAATTTTCCCCAATAGTAAAAAGGCACTAGCCATTGTATTTGAAGCGGATTTCACGGTGCCTC-GAGATGGGGAGGGGTTAAGACG-----TTCCCTACTCACATTCCTTGAGCGGGG-CCTGCGAGGCCTCAGGGCAGAGCCCT-----------------CACCTACCACG------TATACTAAAGAC------------------------------------------------------TCA--ACACAGACTCTGATAATTCAGCCATC------------------------------------------------CCTCAGGTGGATTTTGATGGTGCTTATC i calJac3.chr19 C 0 C 0 s mm10.chr1 178947077 971 + 195471971 -ACCTGTAACACCATGTTGCCCTGCACAGATGCATTCAAATCCTGACATCTCTTAG----AGAAGTATTTGCT-------GGGCAGACTTG-----------CTATGTTCCCAGATTTTACCTGTTCACCACTCAGGCAGACTCCCTGACA----CACGGACCAGAGGCACTGGCTCCT-GTGTTGACAAAGTAAACCACCCC-CAATGCCTACAGCACAAATAGCT--ATCAGAGTGGCTGATCCTT------------------------AAGAAAGTCATTCCGATTCACTGGTGGTGGGTCATGCTTCTTAACTCAGCCACAGGGAAATCCCAATTCAAGCAAAAATAATTCTGTCTTCATTATTCTGCAATCTGGTGGGTGTCTATGGTAATGCGAACA-TCCTTGTCTGAAAGGAGAAGA-CATTGCTTGCGTC-TTAATAACACACTCCTGTGTGTGTCTTCCTGAAATGCTACATTAGCAACTGCATTTCACTGCGCTGGAACCCGGCTCTGGCCCCCTACTGATGCTCTTAAAGCCCATTATTAATGCGGACCCCTTCAGGGGTTGTAATTTGGGATTCAATTTGCCATAAAAATTGTCCTGAGTGTCACCTTCGTAATCGGAGATCATGTGACCCATGAAACACATTGAACTGAAAGAAAGA------TGGAAACGAATGGCAAATAGTCCCCTCT-GTACAAAGGCACTGCCCATTGCAGATGAAGTGAGTTCTAGTGTGTGT--GAGATGGGGAGGGGAGAGGCTG------TCCCCACTCACTTTCCTTCAGCAGGACCCTGCAGGGCCTCCGAGCACAGCCTTCCCAGGGAATATAAGAACACCCACCACAGCACAGTAGCTTAAAAACATCCCCTCCGCTGGGATTTTAATTGTGAAACCTctgtgttgtctccgctggccttaaaatcctaggctccagcaatccttccaccttggcctccccagtagccaggactgcggctcatgtgcctgccccagctCCTCTGTTGGGTTACGGTGCTTTTTACC i mm10.chr1 C 0 C 0 s canFam3.chr7 36537936 870 + 80974532 CAACT----TAGCACATTGCTATGCACAGGTGTGTTCAAATCCTGAAATCACTCAG-----AAATTATCCCATTCTAATAAAATGTACTTG-----------TTATTTTTATAGGTTTTGCTTACTAATTATGCAGTCAGACTTCCTCACACTCTGTTATGCTAGAGGGGCTGGTTTCTCACTTCTACAAAGCA----------AAATGCCCACAGGAGAAATACAACAATC--AGTGTTTGATCCTTTTTTTaaaaaaagaaagaaagaaagaaaAAGTAATTCTAATTCACTCATAGCAGGTCATGCTTCTTAACTTAGCTACAGGGAAATCCCAATTCATGCAAAAATAATGCCGTCTTCATTACTCCACAATCCAA-GGGTGTCTATGGTGATTCGGCCACCCCTTTTCTGAAAGG---AGACCAGCATATGTATC-TTAATAATGCATCCTTCT-TG-ATCTTACTGCAATGTTGCTTCAGTAACTGCATTTGATTGCGACATAACCTGGCTTGGGCCCCCTGCTG-TGCTCTTATAGACCATTATTAATGCAGACCCCTGCAGGGGCTGTAATTTGGGATTCAATTGGCCAT-AAAATTGTCCTAAGTGTCACCTTAGTAATCGGAGATCATGTGACCCATGAAACACACTGAACTGCAAGATGGCACCTCTTAGAAATTAATGTCACATTGTCCCCAGCCGTAAAAAGGCACTAGCCATTACCTCTGAAGTAAATTTTGCTGTGCTTCAGAGATCTCAAGAGGTTAAGAGGAGGGTTGCCACACCCACACTCCCTGAGCTGGG-CCTACAGGAAGT----AAAGAGCCTT-----------------C-CTCAGTACA------TAGTCCG-AGGC------------------------------------------------------TCAGCACACAGACT-GGTCAACCCAGGACCC------------------------------------------------CCTCTGGTTGCTTTTGATGGTACTTACC i canFam3.chr7 C 0 I 225 a score=208589.000000 s hg38.chr1_KI270759v1_alt 416659 58 + 425601 TTTTTAACCAAAAATCCATATGTTTTCTAACAAAGGAGTTTTATCCTAATTCCAGATA s panTro4.chr1 225178110 58 + 228333871 TTTTTAACCAAAAATCCATATGTTTTCTAACAAAGGAGTTTTATCCTAATTCCAGATA i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35139227 58 + 35968885 TTTTTAACCAAAAATCCATATGTTGTCTAGCAAAGGAGCTTTATCCTAATTCCAGATA i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140447018 58 - 143122389 TTTTTGACCAAAAATCCCTATGTTGTCTAGCAAAGGAGTTTTATCCTAATTCCAGATA i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17147232 56 - 229590362 TTTTTAACCAAAAATCCATATGTGGTCTAGC--AGGAGTTTTATCCTAATTCCAGATA i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223914093 56 - 227556264 TTTTTAACCAAAAATCCATATGTGGTCTAGC--AGGAGTTTTATCCTAATTCCAGATA i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16957363 56 - 220367699 TTTTTAACCAAAAATCCATATGTGGTCTAGC--AGGAGTTTTATCCTAATTCCAGATA i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82759265 56 + 85787240 TTTTTAACCAAAAATCCATATGTGGTCTAGC--AGGAGTTTTATCCTAATTCCAGATA i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14474006 58 - 49578535 TTTTTAATCAAAAAGCCACATGTGGTCTAGCAAAGGAGTCTTATCCTAATTCCAGCTA i calJac3.chr19 C 0 I 2139 s mm10.chr1 178948048 57 + 195471971 TTTTGGACCAAAAACTCATGAATATCCTAGA-AAAACACTTTATACTAATTCTCAATC i mm10.chr1 C 0 I 1 s canFam3.chr7 36539031 58 + 80974532 TTTTTAACCAAAAATCCTTATGTGGTCTAGCAAAGCATTATTAATCTGATTCCAGATA i canFam3.chr7 I 225 C 0 a score=2108138.000000 s hg38.chr1_KI270759v1_alt 416717 736 + 425601 CAAAAAGTAGGTTAGATGTCAAGTCTGGCAAAACAAAAGGTAGTTTGattaatcattagggaaatgccaatcaaaaccacaatgagacacaatt----tcacacctatcaggatggctatttccaaaacaaacaaacaaacaaacaaacaaa-----cacaaaacag-------------------------------------------------------------------------------------------aaaatcac-aacggttgacaaggatgtggagaacctggaagccttgcacgtggctagtgggaaggtaaaatggtgcagctggcgtag-----------------------------aaaaacagtatggcagctcctcaaaaaaaggaaacccaggatcactattaacatgtgatccagcaacttcacctctgagta-cacaacccaaagaaccgaaggcagggacttgaat-agatacctgtgtatcagtgttcatagcaacactattcacaatagccaaatgacagtaataatgatctacatgtctactggcagatgaatggataaacaaaa----------gcggatac-agacataccatagagtgtcattgagtcttagaaaggaa-tgaaatt-ctgacacatgctgaacatttgcccatggatgaaccctgaag--acatgatgctaagtgaaatcaaccagac--agagagagacaaataacgtgtgattccacttatacaagatg-cggagagtagtca-aattcacagagaca-gaaagtggagtggtggttcccacgg--tggagcag------------gggt---cattgttcaatagtatatagtttcagtt------------------------------------------------------------tgggaagatgaaaaca----------------tctga s panTro4.chr1 225178168 727 + 228333871 CAAAAAGTAGGTTAGATGTCAAGTCTGGCAAAACAAAAGGTAGTTTGattaatcattatggaaatgccaatcaaaaccacaatgagacacaatt----tcacacctatcaggatggctatttcca--------aaacaaacaaacaaacaaa-----cacaaaacag-------------------------------------------------------------------------------------------aaaatcac-aacggttgacaaggatgtggagaacctggaagccttgcacgtggctagtgggaaggtaaaatggtgcagctggcatag------------------------------aaaacagtatggcagctcctcaaaaaaaggaaacccaggatcactattaacatgtgatccagcaacttcacctctgagta-cacaacccaaagaaccgaaggcagggacttgaat-agatacctgtgtatcagtgttcatagcaacactattcacaatagccaaatgacagtaataatgatctacatgtctactggcagatgaatggataaacaaaa----------gcggatac-agacatacaatagagtgttattgagtcttagaaaggaa-tgaaatt-ctgacacatgctgaacatttgcccatggatgaaccctgaag--acatgatgctaagtgaaatcaaccagac--agagagagacaaataatgtgtgattccacttatacaagatg-cggagagtagtca-aattcacagagaca-gaaagtggagtggtggttcccacgg--tggagcag------------gggt---cattgtttaatagtatatagtttcagtt------------------------------------------------------------tgggaagatgaaaaca----------------tctga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35139285 722 + 35968885 CAAAAAGTAGGTTAGATGTCAAGTCTGGCAAAACAAAAGGTAGTGTGattattcattatggaaatgccaatcaaaaccacaatgagacaccatt----tcacacctatcaggatgcctatttcca--------aa--aaaaaaaccaaaaaa-----caaaaaacag-------------------------------------------------------------------------------------------aaaatca--aacggttgacaaggatgtggagaacctggaagcgtcgcacattgctagtgggaatgtaaaatggtgcagctgacatag------------------------------aaaacagtatggcggctcctcaaaaaaaggaaacacaggatcactattaacacgtgatccagcaacttcacctctgagta-cacaacccaaagaactgaaggcagggacttgaat-agatacctgtgtatcaatgttcatagcaacactattcacaatagccaaatgatagtaaaaatcatctacgtgtctactggcagatgaatggataaacaaaa----------gcggatat-agacatacaatagagtgttactgagtctcagaaaggga-tgaaatt-ctgacacatgctgcacatttgcccatggatgaaccctgaag--acatgatgctaagtgaaatcaaccagac--agagagagacaaataatgtgtgattccacttacacaaggtg-catagagtagtca-aattcacagagac---aaagtggagcagtggttcccacgg--tggagcgg------------gggt---cattgtttaatggtatatagtttcagtt------------------------------------------------------------tgggaagatgaaaaca----------------tctga i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140447076 754 - 143122389 CAAAAAGTAGGTTAGATGTCAAGTCTGGCAAAACAAAAGGTAGTTTGattaatcattatggaaatgccaatcaaaaccacaatcaagatctatcctgatcacatctatcaggatggctatttcca--------aa--aaaaaaa-----aaa-----aaaaaaacag-------------------------------------------------------------------------------------------aaaatcac-aacagttgacaaggatgtggagaaactggaagccttgcacattgctagtgggaatgtaaaatggtgcagctggcatagtgggaatgtaaaacggtgcagctggcttagaatacagtatggcagctcctc-aaaaaaggaaacacaggatcactattaacatgtgatccagcaatttcacctctgagta-cacaacccaaagaattgaaggcagggacttgaat-agatacctgtgtatcaatgttcatagcaacactattcacaatagtgaaatgacagtaataatgatctatgtgtctactggccaatgaatggataaacaaaa----------gcagatat-agacatacaatagagtgttactgagtcttagaaaggaa-tgaaattcctgacacatgctgcacatttgcacatggatgaaccctgaag--acttgatgctaagtgaaatcaaccagacagagagagagacaaataatgtgtgattccacttatacaagatg-cgtagagtagttg-aatt--cagagaca-gaaagtggagtggtggttcccacgg--tggagcgg------------gggt---cattgtttaatggtatatagtttcagtt------------------------------------------------------------tgggaagatggaaaca----------------tttga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17147288 707 - 229590362 CAAAAAGGAGGTTAGATGTCAAGTCTGGCAAAACAAAAGGTAGTTTGATTCatcattacggaaatgccaatcaaaaccacaatgagacaccatt----ttacacctatcaggatggctatttcca--------aa-------------------------aatgcag-------------------------------------------------------------------------------------------aaaattgc-aacggttgccaagaatgtggagaaactggaagccgtgcacgttgctagtgggaatgtaaaatggggcagctggcatag------------------------------aaaacagtgtggtggctcctc-aaaaaagcaaacacaggatcactattaacaggtgatccagcaattccacccctgagta-cacaatccaaagaattgaaggcagggacttggat-ggatgcctgtatatcagtgttcatagcaacattattcatcatagccaaatgacagtaaaaatgatctacatgtctactggcagatgaatggataaacaaaa----------gcggatataagacatacgacagagtggtactgagtcttagaaaggaa-tgaaatt-ctgacacatgctgcacgtttgcacatggatgaaccctgaag--acatgatgctcagtgaaatcaaccagac--agagagagacagacaatgtgtgattccagttataccagatg-cgtagaggagtca-aattcacagagaca-gaaagtggagcgggggttgccacag--cggggtgg------------gggt---cattgtttaacggtatatagcctcagtt------------------------------------------------------------tgggaagaggaaaaca----------------tcgga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223914149 707 - 227556264 CAAAAAGGAGGTTAGATGTCAAGTCTGGCAAAACAAAAGGTAGTTTGATTCatcattacggaaatgccaatccaaaccacaatgagacaccatt----ttacacctatcaggatggctatttcca--------aa-------------------------aatgcag-------------------------------------------------------------------------------------------aaaattgc-aacggttgccaagaatgtggagaaactggaagccgtgcacgttgctagtgggaatgtaaaatggtgcagctggcatag------------------------------aaaacagtgtggtggctcctc-aaaaaagcaaacacaggatcactattaacaggtgatccagcaattccacccctgagta-cacaatccaaagaattgaaggcagggacttgaat-ggatgcctgtgtatcagtgttcatagcaacattattcatcatagccaaatgacagtaaaaatgatctacatgtctactggcagatgaatggataaacaaaa----------gcggatataagacatacgacagagtggtactgagtcttagaaaggaa-tgaaatt-ctgacacatgctgcacgtttgcacatggatgaaccctgaag--acatgatgctcagtgaaatcaaccagac--agagagagacaaacaatgtgtgattccagttataccagatg-cgtagaggagtca-aattcacagagaca-gaaagtggagcgggggttgccacag--cggggtgg------------gggt---cattgtttaacggtatatagcctcagtt------------------------------------------------------------tgggaagaggaaaaca----------------tcgga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16957419 705 - 220367699 CAAAAAGGAGGTTAGATGTCAAGTCTGGCAAAACAAAAGGTAGTTTGATTCATCATTatggaaatgccaatcaaaaccacaatgagacaccatt----tcaCACTTATCAGGATGGCTATTtcca--------aa-------------------------aatgcag-------------------------------------------------------------------------------------------aaaattgc-aACGGTTgccaagaatgtggagaaactggaagtcATGCAcgttgctagtgggaatgtaaaatggtacaggtggcatag------------------------------aaaacagtgtggcggctcctc-aaaaaagcaaacacaggATCACTATTAACaggtgatccagcaattccacccctGAGTA-CACAATCCAAAGAATTGAAGGCAGGGACTTGAAT-GGATGCCTGTGTATCagtgttcatagcaacattattcatcaTAGCCAAACGACAGTAAAAATGATCTACATGTCTActggcagatgaatggataaacaaaa----------gcgGATATAAGACATACGACAGAGTGGTACTGAGTCttagaaaggaa-tgaaatt-ctgacacatgctgcacgTTTgcacatggatgaaccctgaag--acaCGATGCTCAGTGAAATCAACCAGAC----AGAGAGACAAACAATGTGTGATTCCAGTTATACCAGATG-cgtagagtagtca-aattcacagagaca-gaaagtggaccGGGGGTTGCCACAG--CGGGGTGG------------GGGT---CATTGTTTAACGGTATATAGCCttagtt------------------------------------------------------------tgggaagatgaaaaca----------------tctgg i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82759321 702 + 85787240 CAAAAAGGAGGTTAGATGTCAAGTCTGGCAAAACAAAAGGTAGTTTGATTCatcattatggaaatgccaatcaaaaccacaataagacaccatt----tcacacctatcaggatggctatttcca--------aa-------------------------aatgcag-------------------------------------------------------------------------------------------aaaattac-aacggttgccaagaatgtggagaaactggaagccttgcacgttgctagtgggaatgtaaaatggtgcagctggcatag------------------------------aaaacagtgtggcggctcctc-aaaaaagcaaacacaggatcactattagcaggtgatccagcaattctacccctgagta-cacaacccaaagaactgaaggcagggacttgaat-tgatacctgtgtatcagtgttcatagcaacattattcatcatagccaaatgatagtaaaaatgatctacgtgtctactggcagatgaatggacaaacaaaa----------gcggatataagacatacgacagagtggtactgagtcttagaaaggaa-tgaaagt-ctgacacaggctgcacgtttgcacatggatgaaccctgaag--acatgatgctcagtgaaatcaaccag------agagagacaaataatgtgtgattccagttataccaggtg-cgtagaggagtca-gattcacagagaca-gaaagcggagcgggggttgccacag--tggggt-g------------gggt---cattgtttaacggtatgtaacctcagtt------------------------------------------------------------tgggaagatgaaaaca----------------tctgg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14476203 685 - 49578535 CAAAAGGTAGGTTAGATGTCAAGTCTggcacaacaaaaggcagtctgattaatcat---ggaaacgcaaatc-acaccacaatgagacactgtt----tcacaccttttaggatggctattacca--------aa-------------------------acaacag-------------------------------------------------------------------------------------------aaaattac-aactgctgacaaggatgtggagaaa-tggagcccttgtacattgctagtgggaatgtaacatggtgcagctggtagag------------------------------aaaacagcacagtggctcctcagaaaccagaaacgtaggatcactattaatctatgacccagcagtttcacctctgggt---ttaaccgaaagaactgaaagcagggacttggat-agatatttgcatatcactgttcatggcaacattattcgcaacagccaa---aaagtaaaaataatctagacgtctattggcagatgaatggataaacagaa----------gcggatat-agacatacaacagaatattactgcatcttagaaaggaa-tgaaatt-ctgacacatgctgcgc------------atgaaccttgaag--acatgatgctaagtgaaataaatcaggt--atagagaggcaaataatgtaggatcccacttacacaaggta-cacagagtagtga-aattcac--aggca-gaaagtggaatggggcttcccctgg--tggcatgg------------gagttactactgtgtaatcgtatgtagtttcagtt------------------------------------------------------------tgggaa-atgaaaaca----------------tctga i calJac3.chr19 I 2139 C 0 s mm10.chr1 178948106 749 + 195471971 TAAAAAGCAGGTTAGATGTCAGGTCTAG--------------------ttcattattaggga------agtcaaattcacaat-aaattccatt----t-acaaccataagagtggctacaattg--------aataaataaaacaaaacaagACCCCAGAAGACAATCAGTCCTATGTGATAGGTAACACGTATCTATAATGACAGCTAGTTAGGAAGCTGGGGCTATAGAGTTGGACTCCTGCTtcaaacaaagccaagataactaagtgttggcaatgatgtgtagaaatgagaaccctggtactctgctggtatagatctaaaatagttcaactgctgtgc------------------------------aaagcaaaacaaagattcatc-taaaaagtaaacatggcttgattac------atgacccagctctcctagctctgagta-ttcgatcgaaagaccgggatgcacacacttgcctgggatgc-------tcagtgctcacagcagtgcttgccataactgtcca---------------------atgtccactggcaggtgaatggacctgggaaa----------tgtgatgt-gtacataca----agtgctatta---tttggcctggaattgaaacc-ctgacatgtgatata-------gcatggctgaaccccaaag--acattgtgctaagtgaaaataggcaaac--agagaaagacaagtatcatgtggatccgctt----cagatgaagtatagcatttgcagtgcacaggaaaaccaaagtgcagctgtggttactccag--tgtggggg------------acatt--tactgtgtaatgggtcagggattcactt------------------------------------------------------------tggaaagatgaaacca----------------ttttg i mm10.chr1 I 1 C 0 s canFam3.chr7 36539089 741 + 80974532 TAAAAGGCAATTTAGATGTTAAGTCTGGCCAAACAAAAGGTAGTTTGGctaatcactagggaaatgcaaatcaaaaccacaatgagatagcatt----tctcatccattagcatagatattatta--------aa------aaccacaacaa-----aacaaagcag-------------------------------------------------------------------------------------------aaaatagc-aagtattggcaaggaggtg----------------------------------------------acagttgctgtgg------------------------------aaaacagtatggaagttcctc-aaaaagttaaata-------------------tgatccagcaattccacttctgggtattatacacaagagaattgaaagcaggaacttgacc-agatatttgaacaccaatgttcatagcaacattatttgcaatagccaaaagatgg---aaacaacccaaatttccatccacggaaaaatagataaacaaaatgtactacatgcgg-tat-acacacactctggaatattattcagtcttcaaaaggaa-tgaaatt-ctgacacccgctaca-------agacggaggaaactcaaggacacattttactgagtgaaataagccacac--acaaaaggacaaatac----tgatttcacttgtatgaggta-catggagtaatca-agtacatagagatg---aagtagagtggtggtttctgggggttgaggggggacaggaatagagggc---tgctgtttaataagttgcaattttatttttatatttaaaaaaaagattttatgtatttattcatgaaagatacagagaggcagagacataggcagagaaaaaaaggctccccatgaggagcctga i canFam3.chr7 C 0 I 106 a score=128045.000000 s hg38.chr1_KI270759v1_alt 417453 39 + 425601 aaaatggatggtggtga-cggctgaagaacaat-----gcgaatg s panTro4.chr1 225178895 39 + 228333871 aaaatggatggtggtga-cggctgaagaacaat-----gcgaatg i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35140007 39 + 35968885 aaaatggatggtggtga-cggctggagaacaat-----gcgaatg i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140447830 39 - 143122389 aaaatggatggtggtga-cagctggagaacaat-----gcaaatg i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17147995 39 - 229590362 aaaatggatggtggtga-cggctggagaacaat-----gcgaatg i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223914856 39 - 227556264 aaaatggatggtggtga-cggctggagaacaat-----gcgaatg i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16958124 39 - 220367699 aaaatggatggtggtga-cggCTGGAGAACAAC-----GCAAATG i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82760023 39 + 85787240 aaaatggatggtggtga-cggctggagaacaac-----gcgaatg i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14476888 39 - 49578535 aaagtgaatgatgggga-cagtagcagaacaat-----gtgaatg i calJac3.chr19 C 0 C 0 s mm10.chr1 178948855 36 + 195471971 gga-caggtggaggtg--tggttgg-gaacaat-----gtaaatg i mm10.chr1 C 0 N 0 s canFam3.chr7 36539936 45 + 80974532 aaaaagagttatggagattggctgcacaacagccattggtaaatg i canFam3.chr7 I 106 C 0 a score=1402363.000000 s hg38.chr1_KI270759v1_alt 417492 469 + 425601 tacttaatgccactgagctttctattttaaaatggttagaatggtaaagcatacattatgtaccttttataacaaAATGTTTTAAGGTAGATTGGTTGTCAAAATACTAGAATTTCACATTTCAATGGACGAAAGCCAAAACGAATGCAATGTGGGACTGCCCTGGAAAACTCCAGGCATT----TGGACGGCCATCTTGAAACTGTGCTGTAGATAAGGTAGATCAAGACCAGGAAGCCCTGGGGAGAAGGTGGCAGGGATATAGAGCTGGAGAGAAGGGGAACTGTCTG------CCTCTTTCCTTCAGAAAAGCCTGCGGTGACAACTTGTTCACCTCTAGCCTTACTGCTCGGGCTGCAGAGGACGCCGGCACCAGCACCTTTGTCCATCTCAAGGGCTCTGTTGGAAACTTGAGTCAAATCAACTACCTTGCAGCCTTAATCTATAGTAGTTATTTTTGTTGTTCCTTCTGTTC s panTro4.chr1 225178934 469 + 228333871 tacttaatgccactgagctttatattttaaaatggttagaatggtaaagcgtacattatgtaccttttataacaaAATGTTTTAAGGTTGATTGGTTGTCAAAACACTAGAATTTCACATTTAAATGGACGAAAGCCAAAACGAATGCAATGTGGGACTACCCTGGAAAACTCTGGGCATT----TGGACGGCCATCTTGAAACTGTGCTGTAGATAAGGTAGATCAAGACCAGGAAGCCCTGGGGAGAAGGTGGCAGGGATATAGAGCTGGAGAGAAGGGGAACTGTCTG------CCGCTTTCCTTCAGAAAAGCCTGCAGTGGCAACTTGTTCACCTCTAGCCTTACTGCTCGGACTGCAGAGGACGCTGGCACTAGCACCTTTGTCTATCTCAAGGGCTCTGTTGGAAACTTGAGTCAAATCAACTACCTTGCAGCCTTAATCTACAGTAGTTATTTTTGTTGTTCCTTCTGTTC i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35140046 469 + 35968885 tacttaatgccactgaggtttatattttaaaatggttagaatggtaaagcgtacattatgtaccttttacaacaaAATGTTTTAAGGTAGATTGGTTGTCAAAATACTAGAATTTCACATTTAAATGGACAAAAGCCAAAATGAATGCAATGTGGGAACACCCTGGAAAACTCTGGGCATT----TGGACGGCCATCTTGAAACTGTGCTGTAGATAAGGTAGATCAAGACCAAGAAGCCCTGGGGAGAAGGTGGCAGGGATATAGAGCTGGAGAGAAGGGGAACTGTCTG------CCTCTTTCCTTCAGAAAAGCCTGCAGTAGCAACTTGTTCACCTCTAGCCTTACTGCTCGGACTGCAGAGGATGCTGGCACTAGCACTTTTGCCTATCTCAAGGGCTCTGTTGGAAACTTGAGTCAAATCAACTACCTGGCAGCCTTAATCTACAGTAGTTATTTTTGTTGTTCCTTCTGTTC i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140447869 465 - 143122389 tactcaacaccactgagctttctattttaaaatggttagaatggtaaagcatacattatgtaccttttacagcaaAATGTTTTAAGGTAGATTGGTTGTCAAAATACTAGAATTTCACATTTAAATGGACAAAAGCCAAAATGAATGCAATGTGGGACTACCCCGGAAAACTCTGGGCATT----T----GGCCATCTTGAAACTGTTCTGTAGATAAGGTAGATCAAGACCAGGAAGGCCTGGGGAGAAGGTGGCAGGGATATAGAGCTGGAGAGAAGGGGAACTGTCTG------CCTCTTTCCTTCAGAAAAGCCTGCAGTGGCAACTTGTTCACCTCTAGCCTTACTGCTCAGACTGCAGAGGACGCTGGCACTAGCACCTTTGTCTACCTCAAGGGCTCTGTTGGAAAGTTGAGTCAAATCAACTACCTTGCAGCCTTAATCTACAGTAGTTATTTTTGTTGTTCCTTCTGTTC i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17148034 448 - 229590362 tacctaatgccaccgagctttccattttaaaatggttagaatggtaaagcaaacattatgtaccttttacaacaaAAT---------------------------ATTAGAATTTCACATGTAAATGGACGAAAGCCAAAGTGAATGCAATGTGGGAATACCCTGGACAACTCCAGGCATT----TGGACGGCCACCTTGAAACTGTGCTGTGGATAAGGTAGGTCAAGACCAGGAAGCCTAGGGGAGAAGGTGGCAGGGATATTGAGCTGGAGAGAAGGGGAACTGTCTGCCTCTTCCTCTTTCCTTCAGAAAAGCCTGCAGTGGCAACTTGTTCACCTCCAGCCTCACTGCTCGGACTGCAGAGGACGCTGGCACTAGCACCTCTGTCTATCTCATGGGCTCTGTTGGAAACTGCAGTCAAATCAACTACCTTGCAGCCTTACTCTACAGTCGTTATTTTTGTTGTTCCTTCTGTTC i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223914895 448 - 227556264 tacctaatgccaccgagctttccattttaaaatggttagaatggtaaagcaaacattacgtaccttttacaacaaAAT---------------------------ATTAGAATTTCACATGTAAATGGACGAAAGCCAAAGTGAATGCAATGTGGGAATACCCTGGACAACTCCAGGCATT----TGGACGGCCACCTTGAAACTGTGCTGTGGATAAGGTAGGTCAAGACCAGGAAGCCTAGGGGAGAAGGTGGCAGGGATATTGAGCTGGAGAGAAGGGGAACTGTCTGCCTCTTCCTCTTTCCTTCAGAAAAGCCTGCAGTGGCAACTTGTTCACCTCCAGCCTCACTGCTCGGACTGCAGAGGACGCTGGCACTAGCACCTCTGTCTATCTCATGGGCTCTGTTGGAAACTGCAGTCAAATCAACTACCTTGCAGCCTTACTCTACAGTCGTTATTTTTGTTGTTCCTTCTGTTC i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16958163 442 - 220367699 TACCTAATGCCACTgagctttctattttaaaatggttagAATGGTAAAGCGAACATTATGTACCTTttacaacaaaat---------------------------actagaatttCACATGTAAATGGACGAAAGCCAAAATGAATGCAATGTGGGAATATCCTGGACAACTCCAGGCATT----TGGACGGCCACCCTGAAACTGTGCTGTAGATAAGGTAGGTCAAGACCAGGAAGCCCCGGGGAGAAGGTGGCAGGGATATTGAGCTGGAGAGAAGGGGAACTGTCTG------CCTCTTTCCTTCAGAAAAGCCTGCAGTGGCAACTTGTTCACCTCCAGCCTCACTGCTCGGACTGCAGAGGATGCTGGCACTAGCACCTCTGTCTATCTCATGGGCTCTGTTGGAAACTGGAGTCAAATCAACTACCTTGCAGCCTTACTCTACAGTCgttatttttgttgttccttCTGTTC i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82760062 442 + 85787240 tagctaatgccactgagctttctattttaaaatggttagaatggtaaagcgaacattatgtaccttttacaacaaAAT---------------------------GTTAGAATTTCACATGTAAATGGATGACAGCCAAAATGAATGCAATGTGGGAATACCCTGGAAAACTCTGGGCATT----TGGACGGCCACCTTGAAACTGTGCTGTGGATAAGGTAGGTCAAGACCAGGAAGCCCCGGGGAGAAGGTGGCAGGGATATTGAGCCGGAGAGAAGGGGAACTGTCTG------CCTCTTTCCTTCAGAAAAGCCTGCAGTGGCAACTTGTTCACCTCCAGCCTCACTGCTCGGACTGCAGAGGACGCTGGCACTAGCACCTCTGTCTATCTCATGGGCTCTGTTGGAAACTGGAGTCAAATCAACTACCTTGCAACCTTATTCTACAGTCGTTATTTTTGTTGTTCCTTCTGTTC i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14476927 467 - 49578535 ttctcaacgccactatgttttacattttaaaatggttaaaatggtaaagcgtacattatgtacattttacaataaATT-TTTTAAGGTAGATTGGTTGTCAAAATATCAAAATTTCACATCTGAATGGGCAAAGGCCAAAATGAATGAAATGTGGGAGTACCCCGGAAAACTCCAGGCATT----TGGACTGCCATCTTGAAACTGTGCTG-AGGTAAGATAGCTCAAGACCACGATGTCCTGGGGAGGTGGTGGCAGGGACACAGAGTTGGAGAGAAGGTCAAGTGTCTG------CCCCTTTCCTTCAGAAAAGCACACAGTGGCAACCTGTTCACCTTCAGCCTTGCTGCTCGGACCACAGAGGACACCAGAACGAGCCCCTTTGTGTATCCCATGGGCTCGGATGGAAACATTAGCCAAATCAACTACTTTGTGGCCTTATTCTACAGCAGTTATTTCTGTTGTTCCTTCTGTTC i calJac3.chr19 C 0 I 7598 s canFam3.chr7 36539981 398 + 80974532 tactcaatgccacggaactgtacatttaaaaattgttaaaatggttaattgtatgttatg----tttt-------------------------------------gtcataattTCGTATT----TGGACATGACCCAGGATGTGTGAAATCTGGGAATGCACTGGAAAAATCTAGGCAGCCAGGTGGCTGGCTACCTTGTAACTG--CTATAG-------------------------CCTGGGGAGATGCAGATAGAGCCATAGACACAGAGAAAATGGAAA-TGTCTG------CCTCTGTCCAC--GTGGAGCAGGTGGTGGCAACTTGCTCGGCTTCAGCCTAATGGGTCTGCCTGGAGGGGAGGCCAACATTAGCACCTCTGTCTAGCACATGGGCTCTTTTGGAAATTTCAGCCAAATCCATGATTCTGTAGCCTTATTTTACAGCATGTGTTTTTGTTGTTCCTTCTTTTC i canFam3.chr7 C 0 C 0 a score=2056572.000000 s hg38.chr1_KI270759v1_alt 417961 654 + 425601 CTGGTGACACTT--GGTTCTGAATTTAGTCTAGCAGAATGAGAGGGCCTGCACAGGGGCCCTGCTATAAGTTACCTTCACTC--ACAAA---ATGCGGGCATCCC---CACCCCTAGTTACAACACACAT--GTAGC-AACATGTCTTCGTATGTTCTAAAGCAGAGGAAAGAGCC-----------------AATGGAACTTATAAGCTGTAGCTTATAAAGCACTCTTAGATGATTCTACCATTTTTTAAAAAAAATTACCATGATTTATCTGGTCATCTAGAGGGGCCAGACACAGTATGATTATGATGCTCTTATGAACTTCAGAGCACTCCTAGAGGCCACTTTTAATGAAGTACAA-GCCTCCTGACTGGAGATTAAGTCAATATCCTTTATCACACTATTGAAAGCACTGAATATTTTGGTATCGACTCTCACTAC----TCTatttcaaaagaggctg-aagaagctgaaaagctgagcagcacttct--cagtttcaa-gaaactaggaggcaaaaactggagtctaggactcatcaatgagggcctaataattcc--ctccattttggggctgagatctcaaagaactgtaccctaggactaagggtgatggaagtcgactaaaactcagcaacaaattatctcaattcatgaagtggaa---ttaaggtgatc-aagactgctagtCT s panTro4.chr1 225179403 656 + 228333871 CTGGTGACACTT--GGTTCTGAATTTAGTCTAGCAGAATGAGAGGGCCTGCACAGGGGCCCTGCTATAAGTTACCTTCACTC--ACAAA---CTGCAGGCATCCC---CACCCCTAGTTACAACACACAG--GTAGC-AACATGTCTTCATATGTTCTAAAGCAGAGAAAAGAGCC-----------------AATGGAACTTATAAGCTGTAGCTTATAAAGCACTCTTAGATGATTCTACCATTTTTTTAAAAAAATTACCATGATTTATCTGGTCATCTAGAGGGGCCAGACACAGTATGATTATGATGCTCTTATGAACTTCAGAGCACTCCTAGAGGCCACTTTTAATGAAGTACAA-GCCTCCTGACTGGAGATTAAGTCAATATCCTTTATCACACTATTGAAAGCACTGAATATTTTGGTATCGACTCTCACTAC----TCTatttcaaaagaggctg-aagaagctgaaaagctgagcagcacttct--cagtttcaa-gaaactaggaggcaaaaactggagtctagggctcaacaatgagggcctaataattccctctctattttggggctgagatctcaaagaaatgtaccctaggagtaagggtgatggaagtctactaaaactcagcaacaaattatctcaattcttgaagtggaa---ttaaggtgatc-aagattgctagtCt i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35140515 651 + 35968885 CTGGTGACACTT--GGTTCTGAATTTAGTCTAGCAGAATGAGAGGGCCTGCACAGGGGCCCAGCTATAAGTTACCTTCACTC--ACAAA---ATGCAGGCATCCC---CACCCCTAGTTACAACACACAG--GTAGC-AACATGTCTTCATATGTGTTAAAGCAGAGAAAAGAGCC-----------------AATGGAACTTATAAGCTGTAGCTTATAAAGCACTCTTAGATGATTCTACCA--TTTAAAAAAAAAATACCATGATTTATCTGGTCATCTAGAGGGGCCAGACACAGTATGATTATGATGCTCTTATGAACTTCAGAGCACTCCTAGAGGCCACTTTTAATGAAGTACAA-GCCTCCTGACTGGAGATTAAGTCAATATCCTTTATCACACTATTGAAAGCACTGAATATTTTGGTATCGACTCTCACTAC----TCTatttcaaaagaggctg-aagaagctgaaaagctgagcagcacttct--cagtttcaa-gaaactaggaggcaaaaactggagtctagggctcaacaatgagggcctaataattcc--ctccattttggggctgagatctcaaagaattctaccctaggagtaagggtgatggaagttgattaaaactcagaaacaaattatctcaactcttgaagtggaa---ttaaggtgatc-aag-ttgctagtCT i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140448334 654 - 143122389 CTGGTGACTCTT--GGTTCTGAATTTAGTCTAGCAGAATGAGAGGGCCTGCACAGGGGCCCTGCTATAAGTTACCTTCACTC--ACAAA---ATGCAGGCATCCC---CACCCCTAGTTACAACACACAG--GTAGC-AACATGTCTTCATATGTTCTAAAGCAGAGAAAAGAGCC-----------------AATGGAACTTACAAGCTGTAGCACCTGAAGCACTCTTAGATGATTCTACCATTTTAAAATAAAAAATACCATGATTTATCTGGTCATCTAGAGGGGCGAGACAAAGTGTGATTATGATGCTCTTAGGAACTTCAGAGCACTCCTAGAGGCCACTTTTAATGAAGTACAA-TCCTCCTGACTGGAGATTAAGTCAATATCCTTTATCACACTATTGAAAGCACTGAATATTTTGGTATCGACTCTCACTAC----TCTatttcgaaagaggctg-aagaagctgaaaagctgagcagcacttct--cagtttcaa-gaaactaggaggcaaaaactggagtctagggctcaacaatgagggcctaataattcc--ctctattttggggctgagatctcaaagaactctaccctaggagtaagggtgatggaagtcgactaaaactcagcaacaaattatctcaattcttgaagtggaa---ttaaggcgatc-aagattgctagtCT i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17148482 654 - 229590362 CTGGTGAGTCTT--GATTCTGAATTCAGTCTAGCAGAATGAGAGGGCCTGCACAGCGGCCCTGCTATAAGTTATCTTCACTC--ACAAA---ATGCAGGCATCCC---CA-CCCTAGTTACAACACACGG--GTAGC-AACACGTCTTCAAATGTTCTAAAGCAGAGAAAAGAGCC-----------------GATGGAACCTATAAGCTAGAGCACCTGCAGTACTCTTAGATGATTCTACCATTTTTT-AAAAAAAATCTCATGATTTATCTGGTCATCTAGAGGGGC----CAAAGTGTGATTATGATGCTCTTATGAACTTCAGAGCACTCCTAGAGGCCACTTTTAATGAAGTACAA-TCCTCCTGACTGGAGATTAAGTCAATATCCTTTATCGCACTGTTGAAAGCACTGAATATTTTGGTATCGATTCTCACTACtctgtctatttcaaaagaggctg-aagaagccgaaaagctgagcagcacttct--cagtttcaa-gaaactaggaggcaaaaactggagtctagggctcaacaatgagtgcctaataattcc--ctctacttggaggctgagatctgaaagaactctgccctaggagtaagggtgatggaagttgactaaaactcagc-acaaattatctcaattcttgaagtggaattcttgaagtgatc-aagattgctagGCT i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223915343 654 - 227556264 CTGGTGAGTCTT--GATTCTGAATTCAGTCTAGCAGAATGAGAGGGCCTGCACAGTGGCCCTGCTATAAGTTACCTTCACTC--ACAAA---ATGCAGGCATCCC---CA-CCCTAGTTACAACACACGG--GTAGC-AACACGTCTTCAAATGTTCTAAAGCAGAGAAAAGAGCC-----------------GATGGAACCTATAAGCTAGAGCACCTGCAGTACTCTTAGATGATTCTACCATTTTTA-AAAAAAAATCTCATGATTTATCTGGTCATCTAGAGGGGC----CAAAGTGTGATTATGATGCTCTTATGAACTTCAGAGCACTCCTAGAGGCCACTTTTAATGAAGTACAA-TCCTCCTGACTGGAGATTAAGTCAATATCCTTTATCGCACTGTTGAAAGCACTGAATATTTTGGTATCGATTCTCACTACtctgtctatttcaaaagaggctg-aagaagccgaaaagctgagcagcacttct--cagtttcaa-gaaactaggaggcaaaaactggagtctagggctcaacaatgagtgcctaataattcc--ctctacttggaggctgagatctgaaagaactctgccctaggagtaagggtgatggaagttgactaaaactcagc-acaaattatctcaattcttgaagtggaattcttgaagtgatc-aagattgctagGCT i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16958605 648 - 220367699 CTGGTGAGTCTT--GATTCTGAATTCAGTCTAGCAGAATGAGAGGGCCTGCACAGCGGCCCTGCTATAAGTTACCTTCACTC--ACAAA---ATGCAGGCATCCC---CA-CCCTAGTTACAACACACGG--GTAGC-AACACGTCTTCAAATGTTCTAAAGCAGAGAAAAGAGCC-----------------GATGGAACCTATAAGCTAGAGCACCTGCAGTACTCTTAGATGAttctaccattttaa-aaaaaaaatcccatgattTATCTGGTCATCTAGAGGGGC----CAAAGTGTGATTACGATGCTCTTATGAACTTCAGAGCACTCCTAGAGGCCACTTTTAATGAAGTACAA----TCCTGACTGGAGATTAAGTCAATATTCTTTATCGCACTGTTGAAAGCACTGAATATTTTGGTATCGATTCTCACTACTCTGTCTATTTCAAAAGAGGCTG-AAGAAGCCGAAAAGCTGAGCAGCATTTCT--CAGTTTCAA-GAAACTAGGAGGCAAAAACTAGAGTCTAGGGCTCAACAATGAGTGCCTAATAATTCC--ctctacttggaggctgagatcCGAAAGAACTCTGCCCTAGGAGTAAGGGTGATGGAAGTTGACTAAAACTCAGC-ACAAATTATCTCAATTCTTGAAGTGGAA---TTAAGGTGATC-AAGATTGCTAGGCT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82760504 651 + 85787240 CTGGTGAGTCTA--GATTCTGAATTCAGTCTAGCAGAATGAGAGGGCCTGCACAGGGGCCCTGCTATAAGTTACCCTCACTC--ACAAA---ATGCAGGCATCCC---CGCCCCTAGTTACAGCACACAG--GGAGC-AACATGTCTTCAAATGTTCTAAAGCAGAGAAAAGAGCC-----------------AATGGAACTTACAAGCTATAGCACCTCAAGTACTCTTAGATGATTCTACCATTTTTT--AAAAAAATCCCATGATTTATCTGGTCATCTAGAGGGGC----CAAAGTGTGATTATGATGCTCTTATGAACTTCAGAGCACTCCCAGAGGCCACTTTTAATGAAGTACAA-TCCTCCTGACTGGAGATTAAGTCAATATCCTTTATCACACTGTTGAAAGCACTGAATATTTGGGTATCGATTCTCACTACtctgtctatttcaaaagaggctg-aagaagccaaaaagctgagcagcacttct--cagtttgaa-gaaactaggaagcaaaaactggagtctagggctcaacaatgagtgcctaataattcc--ctctatttggaggctgagatctgaaagaactctaccctaggagtaagggtgatggaagtcgactaaaactcagc-acaaactatctcaattcttgaagtggaa---ttaaggtgatc-aagattgctagGCT i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14484992 658 - 49578535 CTGGTGACTCTT--GATTCTGAATTCAGTCTAGCAGAATGAGAGGACCTGCATAGGGGTCCTGCTGTCAGTTACCTTCACTCTGACAAA---ATCCAGGCATCCC---CACTCCTACTTATAATACACAGCTGTGTCGAACATGTCTTTACATGTTCTAAAGCACAG-AAAGAGCC-----------------AATGGAACCGACGAGCTCTAGCA-ACAAAGCACTCTTAGATGATTCTACCATTTT----AAAGAAATCCCATGATTTACCTGGTCATCTAGGGGAGCCAGACACAGGATGATTATGATGGTCTTATGAACTGGAGAGCACTCCTAGAGGCCACTTGTAATGAAGTAAAAATCCTTCTGGCTGGAGACTAAGTCAATCTACTTCATCACATTATTGAAAACAC--AATATTTTGCTATCGACTGTCCCTACtctgcctatttcaaaagaggctg-gagaagctgcaaagtggagcagcacttctcacagctgtaa-gaaactaggaggcaaaaactgcagtctcaggctcaacgatgagggccttataattcc--ctctgtttttgggctgagatctcaaagatctataccctaggagtaaggtgagtggagggagactaaaactcagcaacaaattatctcaattcttgaagttgaa---ttacagtgacc-aagactgctagtCt i calJac3.chr19 I 7598 C 0 s canFam3.chr7 36540379 669 + 80974532 ATGGTGACTCTCTAGATTCTGAGTCGAGGCTGGCAGAGTGAGATGGCCTGAATAGGGGCCCTTCTGTACATTGCCTTCACTC--TCACATATGTGCTCCCACACCTCTCACCCCCAGTTACAAGGCACAG--GCAGC-AACATTCCTTCATATGTTCTATAGTAGAGATCAGAGCCAATATTACCCTGACAGTAATAGAACTTACGGGCCACTGCACACAAGGCACTCTTTGATGATTCTACTA--TAAGAAAAAAAATTCCTCTGATTTATCTGGTCACCTGGAGAGGCCAGACACAGTATAATTATGATGTTTTTAATAAATGCA------------AGAGTATTTTTAATGAAGCAAGA-TCTTCCAGACAGGAGATTAAGTCAATATTCTTTATCACATTATGGAAGGCATGCTATACTTTGGCACTGACTCTTTCCACTAtgccagtttcaaacaaggctgtgagaatcaaaaagattgagtagaacctgtgacagcttcaatgggatgagggagcaaaacctgcagtctagggctcagca---agagcctaataatccc--ctctactt-aggtttaagaccacaaaggatgatactc-agaagaaagatgaactggaataggctgaaactcaatttcaaatcatctcaattcttgaaattaga---ttatggtgatctcagattgctagttt i canFam3.chr7 C 0 N 0 a score=1901126.000000 s hg38.chr1_KI270759v1_alt 418615 685 + 425601 GGgggagg-ggtggagcaaaatggctgactacaaggctccactgattgtccccacagcaggaatgccaaattcaacagctatccacataaagacagcatctttataaaaccaacaatcaggtgagcactcacagtccctggttttaattct--atcactgaaagaggcaccaaggaaggtagcaaggagagtcctgaattgccagtgccccacttcctccatcgcccaacagcggccatgtggcacagagcaagaacctgtgcactcaggagagacag--cacagtgattatgagactttacactgaactcagcactgccctgtcacagtagaaagcaaaaccagactgaactcaactgatgaacgcccagggagggagcattcagatgggcccaagctggaggggaaccgctgt-ccccgtggggggaatctgagttccagcaagcctcaccaccatgggctaaagtgctctggggccataaataaacctaaaaggcagtctataccacaaggactgtaactcttaggcaagtcctagtgctgagctgggctcgaagccagtgggcttggggagcatgcgacctactgagacaccacccaacacagctaaaggagtgtttgcaccagtccttccccaaccccaggcagcacagctcttggctccaaaagagatccctccattctgcttga s panTro4.chr1 225180059 685 + 228333871 aggggagg-ggtggagcaaaatggctgactagaaggctccactgattgtctccacagcaggaatgccaaattcaacagctatccacataaagacagcatctttataaaaccaacaatcaggtgagcactcacagtccctggttttaattct--atcactgaaagaggcaccaaagaaggtagcaaggagagtcctgaattgcctgtgccccacttcctccattgcccaacagcggccatgtggcacagagcaagaacctgtgtactcaggagagagag--cacagtgattatgagactttacactgaactcagcactgccctgtcacagtagaaagcaaaaccagactgaactcaactgatgaacgcccagggagggagcattcagatgggcccaagctggaggggaaccgctgt-ccccgtggggggaatctgagttccagcaagcctcaccaccatgggctaaagtgctctggggccataaacaaacctaaaaggcagtctataccacaaggactgtaactcttaggcaagtcctagtgctgagctgggctcgaagccagtgggcttggggagcatgcaacctactgagacaccacccaacacagctaaaggagtgtttgcaccagtccttccccaaccccaggcagcacagctcttggctccaaaagagatccctccattctgcttga i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35141166 685 + 35968885 GGgggagg-ggtggagcaaaatggctggctagaaggctccactgatagtccccacagcaggaatgccaaattcaacaactatccacataaagacagcatctttataaaaccaacaatcaggtgagctctcacagtccctggttttaactct--atcactgaaagaggcaccaaagaaggtagcaaggagagtcctgaattgccagtgcccaccttcccccatcgctgaacagcggccatgtggcacagagcaacaacctgtgtactcaggagagagag--cacagtgattatgagactttacactgaactcagtactgccctgtcacagtagaaagcaaaaccagactgaactcaactgatgaacacccagggagggagcattcagatgggcccgagctggaggggaaccgccgt-cccagtggggggaatctgagttccagcaagcctcaccaccatgggctaaagtgctctggggccataaataaacctaaaaggcagtctataccacaaggactgtaactcttaggcaagtcctagtgctgagctgggctcggagccagtgggcttggggagcatgcgacctactgagacaccagccaacgcagctaagggagtgtttgcaccagtccttccctagccccaggcagcacagctcttggatccaaaagagatccctccattccgcttga i ponAbe2.chr1_random C 0 I 19 s nomLeu3.chr5 140448988 681 - 143122389 GCagga-g-ggtggag-aaaatggctgactagaaggctccactgactgtccccccagcaggaatgccaaattcaacaattatccacataaagacagcatcgttataaaaccaacaatcaggtgagcactcacagt--ctggttttaactat--atcactgaaagaggcactgaagaaggtagcaaggagagtcctgaattgccagtgccccacttcctccatcgcccaacagtggccatgtggcacagagcaagaacctgtgtactcaggagagagag--cacagtgattacgagactttacaatgaactcagtactgccctgtcacagtagaaagcaaaaccagactgaactcaactgatgaacacccagggaaggagcattcagatgggcccaagctggaggggaactgccat-cccagtggtgggaacctgagttccagcaagcctcaccaccatgggctaaagtgctctggggccataaataaacctaaaaggcagtctataccacaaggactgtaactcttaggcaagtcctagtgctgagctgggctcagagccagtgggcttggggagcatgcgacctactgagacaccacccaacgcagctaagggaatgtctgcaccagtccttccccagccccaggcagcacagctcttggctccaaaagagatccctccattccgcttga i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17149136 671 - 229590362 gagggagg-ggtggagca--------gactagaaggctccactgatcgtcccctcagcaggaatgccaaattcaacaactatccacataaagaaagcatctttatgaaaccaacaatcaggtgagcactcacggt-cctagttttaactgtgtatcactgaaagaggccccgaagaaggtctcaagaagactcctgaattaccagtgtcgcccttcctccatcgcccaacagtggccatgtggcacagagtaagaacctgcacactcaggagagagaa--cacagagattaggagacttcacactgaactcagtaccgccctgtcacagtagaaagcaaaaccagactgaactcaactgatgaccacccagggagggagcattcagatgagt-----ctggaggggaactgccat-cc--ggggtgggaacttgagttccagcaagcctcgccaccacgggctaaagtgctctggggccataaataaatctgaaaagcagtctataccacaaggactgcaactcttaggcaagtcctagtgctgagctgggctcggagccagtgggcttggggagcatgcgacctactgagacaccagccaatgcagctaagggagtgtttgcgccagtccttccccagccccaggcagcacagctcttggctccaaaagagatccctctattctgcttga i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223915997 671 - 227556264 gagggagg-ggtggagca--------gactagaaggctccactgatcgtcccctcagcaggaatgccaaattcaacaactatccacataaagaaagcatctttatgaaaccaacaatcaggtgagcactcacggt-cctagttttaactgtgtatcactgaaagaggccccgaagaaggtctcaagaagactcctgaattaccagtgccgcccttcctccatcgcccaacagtggccatgtggcacagagtaagaacctgcacactcaggagagagaa--cacagagattaggagacttcacactgaactcagtaccgccctgtcacagtagaaagcaaaaccagactgaactcaactgatgaccacccagggagggagcattcagatgagt-----ctggaggggaactgccat-cc--ggggtgggaacttgagttccagcaagcctcgccaccaagggctaaagtgctctggggccataaataaatctgaaaagcagtctatgccacaaggactgtaactcttaggcaagtcctagtgctgagctgggctcggagccagtgggcttggggagcatgcgacctactgagacaccagccaatgcagctaagggagtgtttgtgccagtccttccccagccccaggcagcacagctcttggctccaaaagagatccctccattctgcttga i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16959253 669 - 220367699 GGGGGAGG-AGTGGAGCA--------GACTAGAAGGCTCCACTGATCGTCCCCTCAGCAGGAACGCCAAATTCAACAACCATCCACATAAAGAAAGCATCTTTATGAAACCAacaatcaggtgagcactcacggT-CCTAGTTTTAACTgtgtatcactgaaagaggccCC---GAAGGTCTCAAGAAGACTCCTGAATTGCCAGTGCCGCCCTTCCTCCATCGCCCAACAGTGGCCATGTGGCACAGAGCAAGAACCTGCACACTCAGGAGAGAGAA--CACAGAGATTAGGAGACTTCACACTGAACTCAGTACCGCCCTGTCACAGTAGAAAGCAAAACCAGACTGAACTCAACTGATGACCACCCAGGGAGGGAGCATTCAGATGAGC-----CTGGAGGGGAACTGCCATCCC--GGGGTGGGAAcctgagttccagcaagcctCGCCACCACGGGCTAAAGGGCTCTGGGGCCATAAATAAATCTGAAAGGCAGTCTATGCCACAAGGACTGTAACTCTcaggcaagtcctagtgctgagcTGGGCTCGGAGTCAGTGGGCTTGGGGAGCATgagacctactgagacaccagccaaTGCAGCTAAGGGAGTGTTTGCGCCAgtccttccccagccccaggcagcacagctcttGGCTTCAAAAGAGATCCCTCcattctgcttga i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82761155 682 + 85787240 GGGgggggaggtggagcaaaatggctgactagaaggctccactgattgtcccctcagcaggaacgccaaattcaacaactatccacataaagaaaacatctttatgaaaccaacaatcaggtgagcagtcacggt-cctagttttaactgtgcatcactgaaagaggccccgaagaaggtctcaagaagacttctgaattgccactgccgcccttcctccatcacccaacagtggtcacgtggcacagagcaagaacctgcacactcaggagagagaa--cacagagatgaggaggcttcacactgaactcagtaccgccctgtcacagtaggaagcaaaaccagactgaactcaactgatgaccacccagggagggagcattcagatgagc-----ctggagcggaactgccat-cccgggggtgggaacctgagttcctgcaagcctcgccaccaggggctaaagtgctctggggacataaataaatctgaaaggcagtctatgccacaaggactgtaactcttaggcaagttctagtgctgagctgggctcggagccagtgggcttggggagcatgtgacctactgagacaccagccaatgcagctaagggagtgtttgcaccagtccttccccagtcccaggcagcacagctcttggctccaaaagagatccctccattctgcttga i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14485650 681 - 49578535 g-gggaga-ggtggagcaaagtggt-gactaggaggctccacggaccgtccccccagcaggaacgctaaagtcaacaactctctatataaagaaagcatctttataaaactgaaaatcaggtgagcgctcacagtccctggttttaacttc--at--gttaaagaggcaccgaggaaggcagcaaaggcagtctggaattgctggtgccacccttcctgcatcacccaactgtggccatgtggcacagagaaagaacgtgcgcccttgggggagagagtacgcagtgctgatgagactgtacactgaactcaggactgccgtgtcacaggaaaaagcaaaaccagactgaactcagctgctgaccgcccacggagggggcactgagatg-gctctcgctggaggggaactgcctc-tccagtgctgggaacctgagctccagcaagcctcaccaccaggggctagagtgctctgggcccataaataaaccggaaaggcagtctctgccacaaggactgtatccctgagg-aagtcctagtgctgagctgggcttggagccagtgggctcggggcgcgcgtgacctactgagatgccagccaatgcagctaagggggtgtttgcaccagcccttccacagccccaggcagcgcagctcctggctccaaaagagaaccctccattctgcttga i calJac3.chr19 C 0 C 0 a score=19486.000000 s hg38.chr1_KI270759v1_alt 419300 19 + 425601 ggagaggggagggaagagt------------------- s panTro4.chr1 225180744 19 + 228333871 ggagaggggagggaagagt------------------- i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140449669 13 - 143122389 ggagaggggaggg------------------------- i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17149807 13 - 229590362 ggagaggagaggg------------------------- i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223916668 13 - 227556264 ggagaggagaggg------------------------- i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16959922 13 - 220367699 ggagaggagaggg------------------------- i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82761837 13 + 85787240 ggagaggagaggg------------------------- i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14486331 32 - 49578535 ggagaggagagga------gaggagagaagaggagagg i calJac3.chr19 C 0 C 0 e ponAbe2.chr1_random 35141851 19 + 35968885 I a score=728281.000000 s hg38.chr1_KI270759v1_alt 419319 246 + 425601 aaagagtaaagagaactttgtcttacatcttgggtaccagctcacccaaagtaggatagggcactagtcagagttgtgaagtccccatttcaggtccttcctcctggatgacatttccagacacacccagggccaaaagggaacccactgctttgaaaggaaggacccagtgctatcaggatccatcacctgctggctaaagagctcctgggtcctgaataaccagcagcaatatccaagtaatat s panTro4.chr1 225180763 246 + 228333871 aaagagtaaagagaactttgtcttacatcttgggtactagctcacccaaagtaggatagggcactagtcagagttgtgaagtccccatttcaggcccttcctcctggatgacatttgcagacacacccagggccaaaagggaacccactgctttgaaaggaaggacccagtgctatcaggatccatcacctgctggctaaagagctcctgggtcctgaataaccagcagcaatatccaagtaatat i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35141870 246 + 35968885 gaagagtaaagagaactttgtcttatatcttgggtacgagcacagccaaagtaggatagggcactagtcagagttgtgaagtccccatttcaggcccttcctcctgtatgacatttccagacacagccagggccaaaagggaacccactgctttgaaaggaaggacccagtgctatcaggatccatcacctgctggctaaagagctcctgggtcctgaataaccagcagcgatatccaggtaatat i ponAbe2.chr1_random I 19 C 0 s nomLeu3.chr5 140449682 240 - 143122389 -aagaggaaagagaactttgtcttacatcttgggtaccagctcagccaaagtaggatagggcactagtcagagttgtgaagtccccatctca-----ttcctcctggatgacatttccagacacacccagggccaaaagggaacccactgctttgaaaggaaggacccagtgctatcaggatccgtcacctgctggctaaagagctcctgggtcctgaataaccagcagcgatatccaggtaatat i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17149820 245 - 229590362 -aagagtaaagagaactttgtcttgccttttgggtaccagctcagccaaagttggatagggcactggtcagagttgtcaagtccccatttcaggcccttcctcctggatgacatttccagacacacccagggccagaagggaacccactgctttgaaaggaaggacccagtgctgtcaggatccatcacctgctggctaaagagctcctgggtcctgaataaccaacagcgatatccaggtaatat i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223916681 245 - 227556264 -aagagtaaagagaactttgtcttgcctcttgggtaccagctcagccaaagttggatagggcactggtcagagttgtcaagtccccatttcaggcccttcctcctggatgacatttccagacacacccagggccagaagggaacccactgctttgaaaggaaggacccagtgctgtcaggatccatcacctgctggctaaagagctcctgggtcctgaataaccaacagcgatatccaggtaatat i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16959935 245 - 220367699 -aagagtcaagagaactttgtcttgcctcttgggtaccagctcagccaaaGTTggatagggcactggtcagagttGTCAAGTCCCCATTTCAGGCCCTTCCTCCTGGATGGCTTTTCCAGACACACCcagggccagaagggaacccgcTGCTTTGAAAGGACGCACCCAGTGCTGTCAGGATCCATCACCTGCTGGCTAAAGAGCCCCTGggtcctgaataaccagcagtgatatcCAGGTAATAT i papAnu2.chr1 C 0 C 0 s chlSab2.chr25 82761850 245 + 85787240 -aagagtaaagagaactttgtcttgcatcttgggtaccagctcagccaaagttggatagggcactggtcagagttgtcaagtctccatttcaggcccttcctcctggatgacatttccagacacacccagggccagaagggaacccactgctttgaaaggaaggacccagtgctgtcaggatctatcacctgctggctaaagagctcctgggtcctgaataaccagcagtgatatccaggtaatat i chlSab2.chr25 C 0 C 0 s calJac3.chr19 14486363 241 - 49578535 aaagaggaaagagaacgccatcttgcatcttggagaccaggtcagccaaggtaggatagggcaat-gtcagagttgggaggtccccatttcgggcccttcctcctgagcgacatttccagacacacccagggccagaagggagcccattgccttgaaaga----acccggtcctgtcgggatccatcgcctgctggctgaagagctcctgggccctgaataaccaacagcgacatccaggtgatgt i calJac3.chr19 C 0 N 0 a score=285298.000000 s hg38.chr1_KI270759v1_alt 419565 118 + 425601 ccaggtggtggtagccatgggctgcctgtggaaacgggacgaaagagtgggaagagctgggactcatggtttgagtgccagctcagctgcagtagaatagaacaccaggtatatttct s panTro4.chr1 225181009 118 + 228333871 ccaggtggtggtagccatgggctgcctgtggaaaggggaggaaagagtgggaagagctgggactcatggtttgagtgccagctcagctgcagtagaatagaacaccaggtatatttct i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35142116 118 + 35968885 ccaggtggtggtagccatgggctgcctgtggaaaggggaggaaagagtgggaagagctgggactcatggtttgagtgccagctcagctgcagtagaatagaacagcaggtatatttct i ponAbe2.chr1_random C 0 C 0 s nomLeu3.chr5 140449922 118 - 143122389 ccaggtggtggtagctatgggctgcctgtggaaaggggaggaaagagtgggaagagctgggactcatggtttgagtgccagctcagctgcagtagaatagaacaccaggtatatttct i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17150065 118 - 229590362 ccaggtggtggtagccatgggctgcctgtggaaaggggaggagagagttggaagagctgtgactcgtggtttgagtgccagcttagctgcagtagaagagaccaccaggtatatttct i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223916926 118 - 227556264 ccaggtggtggtagccatgggctgcctgtggaaaggggaggagagagttggaagagctgtgactcgtggtttgagtgccagcttagctgcagtagaagagaccaccaggtatatttct i macFas5.chr1 C 0 C 0 s papAnu2.chr1 16960180 118 - 220367699 CCAGGTGGTGGTAGCCATGggctgcctgtggaaaggggaggagagaatTGGAAGAGCTGTGagttgtggtttgagtgccagcttagctgcagtagaatagaacaccaggtatatttct i papAnu2.chr1 C 0 N 0 s chlSab2.chr25 82762095 118 + 85787240 ccaggtggtggtagccatgggctgcctgtggaaaggggaggagagaaagggaagagctatgactcgtggtttgagtgccagcttagctgcagtagaacagaacaccaggtatattttt i chlSab2.chr25 C 0 C 0 a score=3080389.000000 s hg38.chr1_KI270759v1_alt 419683 1817 + 425601 aaggattttggttccagtacgtggctcctggacagcacctctggacctgcccagggcctaagggaacccaatgccctgaagagaaggacacatgcctggttggcttcaccacctgcttactgtaaagccccagggcctcgagcaaatataggccatagccaggtagtgcttctagcaggccttgggtgaaactcactactgtgctggcttcaggtctgaccagtgcagccccagtgatagtggccacaggggagcttgtgtcacctcacacccaactccaggtagctcagcacag--------------------------------agagagagactatgtttgtttgggagaaagtaagggaagagaacaagaatctttgcttggtatccagagaacgcttgcagatcttatccaagaccacaaaggtggtacctctatgagtctgcaagaaccacagtgttaccaggcttggggtgccttgtaatacaaacatgacttagataacacacccaagtcctttcaaatacctcaaaagccttcccaagaagaacaggcacaaacagcccagattgcaaagact---ataagtacctaactcttcaatgcccagacacca------------aagaacatccacaagcatcaaaaccattcaggaaaatgtggcctcaccaaatgaactaaatcaggcatcagggaacaatcccagagaaacagagatatgcaacttttcagacagagaattcaaaacagccattttgaggaaactctgagaaattcaagataacacagaaatggaattcagaattctatcacataaattgaacaaagagattaaaataattaaaaagaatcaagcagaaattctggagctgaaattgcaaatgacatactgaagaatgcatccgttattggccttaaagaggaggtagagaaggagatagggatagaaagtttattcaaagggttaacagagaacacctcaaaccc---agaagatatcaatatctaagtaaaagaaggctacagaacaccaagcagatttaactcaaagaagactacctcgaagcattt-aaaaatcaaactcccaaaggtcaacaataaagaaaagatcctaaaagcagcaaaataaaagaaacaaataacccattggagtttcaatatagctagcagccgacttctcagtggagaactgatagtcgagaag----------agcatatttaaagtgctgaaggaaaaaaacttttacc-ctagaatagaatatctatcgaaaatatccttcatacatgaaggaagaatactttctcagataaacaaaggctgagggatttcaacaaagactagaactgtcctacaagaaatgttaaaggaagtatttcaatcagaaagaaaaggatgttaatgagcaataagaaatcatctgaaaatacaaaacttactggtaatag-taagcacacagaaaaacacagaatatta-----------aacattgtaactctggcttgtaaactactcttaccttgagtagaaaagactaaaagatgaactaat----a-aaaaataataactacaactattcaagacatagacaatacaataatacatacattt-aaaagttaaaaatatataa-------------atttaatatataaattta--------------aaaagttaaaaaacacgggatgaaattaaagtgtagttaacctaaccattattaggattttttgcttctttgtttatgcaagcagtctt-aaaataatgggtaatagatattatttgtaagcctaatggtaacctcaaatcaaaaaacatacaatggatatgccaaaaataaaaagcaagaaattaaatcctaccaccagagaaaatcactttcactaaaa-gaaagacaggaa s panTro4.chr1 225181127 1796 + 228333871 aaggattttggttccagtacctggctcctggacagcacctctggacctgcccagggcctaagggaacccaatgccctgaagagaaggacacaagcctggttgacttcaccacctgcttactgtagagccccagggcctcaagcaaatataggccatagccaggtagtgcttatagcaggccttgggtgaaactcactactgtgctggcttcaggtctgaccagtgcagccccagtgatagtggccacaggggagcttgtgtcacttcacacccaactccaggtagctcagcacag--------------------------------ggagagagactatgtttgtttgggagaaagtaagggaagagaacaagaatctttgcttggtatccagagaacacttgcagatcttatccaagaccacaaaggtggtacctctatgagtctgcaagaaccacagtgttaccaggcttggggtgccttgtaatacaaacatgacttagataacacacccaagtcctttcaaatacctcaaaagccttcccaagaagaacaggcacaaacagcccagattgcaaagact---ataagtacctaactcttcaatgcccagacacca------------aagaacatccacaagcatcaaaaccattcaggaaaatgtggcctcaccaaatgaactaaatcaggcatcagggaacaatcccagagaaacagagatatgcaacctttcagacagagaattcaaaacagccattttgaggaaactctgagaaattcaagataacacagaaatggaattcagaattctatcacataaattgaacaaagagattgaaataattaaaaagaatcaagcagaaattctggagctgaaattgcaaatgacgtactgaagcatgcatcCgttattggccttaaagaggaggtagagaaggagatagggatagaaagtttattcaaagggttaacagagaacacctcaaaccc---agaagatatcaatatctaagtacaagaaggctacagaacaccaagcagatttaactcaaagaagactacctcgaagcactt-aaaaatcaaactcccaaaggtcaacaataaagaaaagatcctaaaagcagcaaaataaaagaaacaaataacccattggagtttcaatatagctagcagccgacttctcagtggagacctgatagtcgagaag----------agcatatttaaagtgctgaaggaaaaaaacttttacc-ctagaatagaatatctatcgaaaatatccttcatacatgaaggaagaatactttctcagataaacaaaggctgagggatt-------------------tcctacaagaaacgttaaaggaagtatttcaatcagaaagaaaaggatgttaatgagcaataagaaatcatctgaaaatacaaaacttactggtaatag-taagcacacagaaaaacacagaatatta-----------aacattgtaactctggcttgtaaactactcttaccttgagtag-aaagactaaaagatgaactaat----a-aaaaataataactacaactattcaagacatag-taatgtattaatacatacattt-aaaagttaaaaatatataa-------------atttaatatataaatttt--------------aaaagttaaaaaacatgggatgaaattaaagtgtagttaacataaccattattaggattttttgcttctttgtttatgcaagcagtctt-aaaataatgggtaatagatattatttgtaagcctaatggtaacctcaaatcaaaaaacatacaatggatatgccaaaaataaaaagcaagaaattaaatcctaccaccagagaaaatcactttcactaaaa-gaaagacaggaa i panTro4.chr1 C 0 C 0 s ponAbe2.chr1_random 35142234 1813 + 35968885 aaggattttggttccagtacctggctcctggaca-------------tgcccagggcctaggggaacccaatgccctgaagagaaggacacaagcctggctggcttcactacctgcttactgtagagccccagggccttgagcaaatataggccatagccaggtagtgcttatagcaggccttgggtgaaactcactactgtgctggcttcaggtttgatcagtgcagccccagtgatagtggccacaggggagcttgtgtcacttcacacccagctccaggcagctcagcacag--------------------------------agagagagactatgtttgtttgggggaaagtaagggaagagaacaagaatctttgcctggtatccagagaatgcttgcagatcttatccaagaccaccaaggtggtacctctatgagtctgcaagaaccacagtgttactgggcttggggtgccttgtaatacaaacatgacttagataacacactcaagtcctttcaaatacctcaaaagccttcccaagaagaacaggcacaaaaagcctggattgcaaagact---ataagtacttaactcttcaatgtccagacacca------------aagaacatccacaagcatcaaaaacattcaggaaaacgtggcctcaccaaatgaactaaatcaggcatcagggaacaatcccagagaaacagagacatgcgacctttcagacagagaattcaaaacagccattttgaggaaactctgagaaattcaagataacacagaaatggaattcagaattctatcacataaattgaacaaagagattgaaataatcaaaaagaatcaagcagaaattctggagctgaaattgcaaatgacatactgaagaatgcatccgttattgcccttaaagaggaggtagagaaggagatagggatagaaactttattcaaagtgttaacagagaacacctcaaaccc---agaagatatcaatatctaagtacaagaaggctacagaacaccaagcagatttaactcaaagaagactatctcgaagcattt-aaaaatcaaactcccaaaggtcaacaat-----aaagatcctgaaagcagcaaaataaaagaaacaaataaaccattggagtttcaatatagctagcagctgacttctcagtggagacctgatagtccagaag----------agcatatttaaagtgctgaaggaaaaaaacttttttagatagaatagaatatctattgaaaatatccttcatacatgaaggaagaatactttcccagataaacaaaggctgagggatttcaacaaagactagaactgtcctacaagaaatgttaaaggaagtatttcaatcagaaagaaaaggatgttaatgagcaataagaaatcatctgaaaatacaaaacttactggtaatag-taagtacacagaaaaacacagaatatta-----------aacattgtaactctgacttgtaaactactcttaccttgagtag-aaagactaaaagatgaactaat----a-aaaaataataactacaactattcaagacatagacaatacaataatatatacattt-aaaagttaaaaatatataaatttaatatatacatttaatatataaattta--------------aaaagttaaaaaacataggatgaaattaaagtgcagttaacctaaccattattaggattttttgctgctttgtttatgcaagcagtcttaaaaataatgggtaatagatattatttgtaagcctaatggtaacctcaaatcaaaaaacatacaatggatatgcagaaaat-aaaagcaagaaattagatcctaccaccagagaaaatcaccttcactaaaaggaaagacaggaa i ponAbe2.chr1_random C 0 N 0 s nomLeu3.chr5 140450040 1787 - 143122389 aaggtttttggttctagtacctggctcctggacagcacctctggacctggccagggcctaggggaacccaattccctgaagagaaggacacaagtctggctggcttcaccacctgcttactgtagag-cccagggccttgagcaaatacaggccatagccaggtagtgcttatagcaggccttgggtgaaactcaatactgtgctggcttcaggtctgaccagtgcagccccagtgatagtggcctcaggggagcttgtgccacttcacacctagctccaggcagctcagcagag--------------------------------agagcgagactatgtttgtttgggggaaagtaagggaagagaacaagaatctttgcctggtatccagagaacgcttgcagatcttatccgagaccaccaaggtggtacctctatgagtctgcaagaaccacagtgttactgggcttggggtgccttgtaatacaaacatgacttagagagcacactcaagtcctttcaaatacctcaaaagccttcccgagaagaacaggcacaaaaagcccggattgcaaagact---ataagtacctaactcttcaatgtccagacacca------------aagaatatccacaagcatcaaaaacattcaggaaaacgtggcctcaccaaatgaactaaatcaggcatcagggaacaatcccagagaaacagagatacgcgacctttcagacagagaattcgaaacagccattttgaggaaactctgagaaattcaagataacacaaaaatggaattcagaactctatcacataaattgaacaaagagattgaaataattataaagaatcaagcagaaattctgaagctgaaattgcaaatgacatactgaagaatgcatccattattggccttaaagaggaggtagagaaggagatggggatagaaagtttattcaaaggggtaacagagaactcctcaaactcagaagaagacatcaatatctaagtacaagaaggctacagaacaccaagcagatttaacccaaagcagactacctcgaagcattt-aaaaatcaaactcccaaaggtcaacaataaagaaatgatc----------------------------tggcacattggagtttcaatatcgctagcagccaacttctcagcggagacctgatagtccagaagagagtggcatagcatatttaaagtgctgaaggaaaaaaacttttacc-ctagaatagtatatctgttgaaaatatccttcacacatgaaggaagagtacgttcccagataaacaaaggctgagggatttcaagaaagactagacttgtcctacaagaaatgttaaaggaagtatttcaatcagaaagaaaaggatgttaatgaggaataagaaatcatctgaaaatacaaaactcactggtaacag-taagtacacagaaaaacacagaatatta-----------aacattgtaactgtggtgtgtaaactactcttaccttgagtag-aaagactaaaagatgaactaat----a-aaaaataataactacaactattcaagacatagacaacac---aatatatacattt-aaaagttaaaaatatataa-------------atttaatatataaattta--------------aaaagttaaaaaacacgggatgaaatta----------atcctaaccattattaggattttttgcttctttgtttatgcaagcagtctt-aaaataatgggtaatagatattatttgtaagcctaatggtaacctcaaatcaaaaaacatacaatggatatgcaaaaaacaaaaagcaagaaattaaatcctaccaccagagaaaatcaccttcactaaaa-gaaagacaggaa i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17150183 1853 - 229590362 aaggtttttggttccagtacctggctccaggacagcacctctggacctgcccagggcctaggggaacccagcgccctgaagagaatgacacaagcctggctggcttcaccatctgcttactgtagagccccagggccttgaccaaatataggccatagtcaggtagtggttatagcaggccttgggtgaaactcactactgtgctggcttcaggtctgaccagtgcagccccagtgatagcagtcagaggggagcttgtgtcactttacacccagctccaagcagctcagtacagagac--------------------------agagagagagactatgtttgtttgggggaaaggaagggaggaaaacaagaatctttgcctggtatccagagaattcttgcagatcttatccaagaccaccaaggcagtacctctatgagtctgcaagaaccacagggttactggccttggggtgccttgtaatacaaacatgacttagataacacacccaagtcctttcaaatacctcaaaagccttccccagaagaacaggcacaaaaagcccggattgcaaagactgtgacaagtacctaacacgtcaatgcccagacacca------------aagaacatccacaagcatcaaaaccattcaggaaaacgaggcctcgccaaatgaactaaatcggccatcggggaacgatcctggagaaacagagatgtgtgaccttt----cagagaattcaaaacagccattttgaggaaactctgagaaattcaagataacacagagatggaattcagaattctatcacataaactgaacaaagagattgaaataattaaaaagaatcaagcggaaattctggagctgaaattgcaaatgacatactgaaggatgcatccgttattggccttaaagaggaggtagagaaggagatagggatagaaggtttattcaaaggggaa-cagagagcgcctcaaacccagaagaagatatcaatatctaagtacaagacggctacagaacaccatgcagatttaacccaaagcagtctacctcaaagcatttaaaaaatcaaactcccaaaggtcaacaatatagaaaagatcctaaaagcagcaaaataaaagaaacaaataacatgttggagtttcaatatagctagtagccgacttctcagtggagacctgatagtccaaaag----------agcatatttaaagtgctgaaggaaaaaaacttttacc-ctagaatagtgtatgtatcgaaaatatccttcatacatgaaggaagaatacattcccagataaacaaaggctgagggatttcaacaaagactagacctgtcctacaaggaatgttaaaggaagtatttcaatcacaaagaaagggattttaatgagcaataagaaaccatctgaaaatacaaaactcactggtaatat-taagtacacagaaaaacacaagaaaacatagaatatgataacactgtaattgtggtgcgtaaactattcataccttgagtag-aaagactaaaagatgaactaataaaaa-aaaacccaaaactacaactattcaagacatagacaataaaacaatatatacatttaaaaagttaaaaatatataa-------------atttaatatataaatttannnnnnnnnnnnnnnnnnnttaaaaaactggggatgaaattaaagtatagctaacctaaccattattagg-ttttttgcttctttgtttatgtgagcagtctt-aaaataatgggtaatagatattatttgtaagcctaatggtaacctcaaatcaaaaagcatacaatggatatgcaaaaaataaaaagcaagaaattaaatcctaccaccagagaaaatcaccttcactaaaa-taaagacaggaa i rheMac3.chr1 C 0 C 0 s macFas5.chr1 223917044 1825 - 227556264 aaggtttttggttccagtacctggctccaggacagcacctctggacctgcccagggcctaggggaacccaacgccctgaagagaacgacacaagcctggctggcttcaccatctgcttactgtagggccccagggccttgaccaaatataggccatagtcaggtagtggttatagcaggccttgggtgaaactcactactgtgctggcttcaggtctgaccagtgcagccccagtgatagcagtcagaggggagcttgtgtcactttacacccagctgcaagcagctcagtacagagac----------------------------agagagagactatgtttgtttgggggaaaggaagggaggaaaacaagaatctttgcccagtatccagagaattcttgcagatcttatccaagaccaccaaggcagtacctctatgagtctgcaagaaccacagggttactggccttggggtgccttgtaatacaaacatgacttagataacacacccaagtcctttcaaatacctcaaaagccttccccagaagaacaggcacaaaaagcccggattgcaaagactgtgacaagtacctaacacatcaatgcccagacacca------------aagaacatccacaagcatcaaaaccattcaggaaaacgaggcctcgccaaatgaactaaatcggccatcggggaacgatcctggagaaacagagatgtgtgaccttt----cagagaattcaaaacagccattttgaggaaactctgagaaattcaagataacacagagatggaattcagaattctatcacataaactgaacaaagagattgaaataattaaaaagaatcaagcagaaattctggagctgaaattgcaaatgacatactgaaggatgcatccgttattggccttaaagaggaggtagagaaggagatagggatagaaggtttattcaaaggggaa-cagagagcgcctcaaacccagaagaagatatcaatatctaagtacaagacggctacagaacaccatgcagatttaacccaaagcagtctacctcaaagcatttaaaaaatcaaactcccaaaggtcaacaatatagaaaagatcctaaaagcagcaaaataaaagaaacaaataacacgttggagtttcaatatagctagtagccgacttctcagtggagacctgatagtccaaaag----------agcatatttaaagtgctgaaggaaaaaaacttttacc-ctagaatagtgtatgtatcgaaaatatccttcatacatgaaggaagaatacattcccagataaacaaaggctgagggatttcaacaaagactagacctgtcctacaaggaatgttaaaggaagtatttcaatcagaaagaaagggattttaatgagcaataagaaatcatctgaaaatacaaaactcactggtaatag-taagtacacagaaaaacacaggatatta-----------aacattgtaactgtggtgtgtaaactactcttaccttgagtag-aaagactaaaagatgaactaat-ttaa-aaaacccaaaactacaactattcaagacatagacaataaaacaatatatacatttaaaaagttaaaaatatataa-------------atttaatatataaattta--------------aaaagttaaaaaacaggggatgaaattaaagtatagctaacctaaccattattagg-ttttttgcttctttgtttatgtgagcagtctt-aaaataatgggtaatagatattatttgtaagcctaatggtaacctcaaatcaaaaagcatacaatggatatgcaaaaaataaaaagcaagaaattaaatcctaccaccagagaaaatcaccttcactaaaa-taaagacaggaa i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82762213 1858 + 85787240 aaggtttttggttccagtacctggctcctggacagcacctctggacctgcccagggcctaggggaacccaacgccctgaagagaaggacacaagcctggctggcttcaccacctgcttactgtagagccccagggccttgaccaaatataggccatagtcaggtagtggttatagcaggccttgggtgaaactcactactgtgctggcttcaggtctgaccagcgcagccccagtgacagcagtcacagggaagcttgtgtcactttacacccagctccaagcagctcagtacagagagagagagagagagagagagagagagagagagagagagactacgtttgtttgggagaaagtaagggacgagaacaagaatctttgcctggtatccagagaattcttgcagatcttatccaagaccaccaaggcggtacctctatgagtctgcaagaagcacagtgttactggccttggggtgccttgtaatacaaacatgacttagataacacacccaagtcctttcaaatacctcataagcctccccgagaagaacaggcacaaaaagcccggattgcaaagactgtgacaagtacctaacacgtcaatgcccagacaccaaagaacatccacaagaacatccacaagcatcaaaaccattcaggaaaatgcggcctcgccaaatgaactaaatcggccatcggggaacgatcctggagaaacacagatgtgtgaccttt----caaagaattcaaaacagccattttgaggaaactctgaaaaattcaagataacacagaaatggaattcagaattctatcacataaattgaacaaagagattgaaataattaaaaagaatcaagcggaaattctggagctgaaattgcaaatgacatactgaaggatgcatccgttattggccttaaagaggaggtagagaaggagatagggataga---tttattcaaaggggta--acagaacacctcaaacccagaagaagatatcaatatctaagtacaagacggctacagaacaccatgcagatttaacccaaagcagactacctcaaa--atttaaaaaatcaaactcccaaaggtcaacaatatagaaaagatcctaaaagcagcaaaataaaagaaacaaataacacgttggagtttcaatatagctagtagccgacttctcagtggagacctgatagtccaaaag----------agcatatttaaagtgctgaaggaaaaaaacttttacc-ctagaatagtgtatgtatcgaaaatatccttcatacatgaaggaagaatacgttcccagataaacaaaggctgagggatttcaacaaagactagacctgtcctacaaggaatgttaaaggaagtatttcaatcagaaagaaagggattttaatgagcaataagaaatcatctgaaaacacaaaactcactggtaatagttaagtacacagaaaaacacagaatatta-----------aacattgtaactgtggtgtgtaaactactcttaccttgagtag-aaagactaaaagatgaactaataataataataaaaaaaactacaactattcaagaaatggacaatacaataatatatacattt-gaaagttaaaaatatatac-------------atttaatatatcaattta--------------aaaagttgaaaaacaggggatgaaattaaggtatagctaacctagccattattaggattttttgcttctttgtttatgtgagcagtctt-aaaataatgggtaatagatgttatttgtaagcctaatggtgacctcaaatcaaaaaacatacaatggatatgcaaaaaataaaaagcaagaaattaaatcctaccaccagagataatcaccttcacta-----aaagacaggaa i chlSab2.chr25 C 0 C 0 a score=3621011.000000 s hg38.chr1_KI270759v1_alt 421500 2991 + 425601 ggaaggaaataagaaggagaagaccacaaaataaccaTTGcattgggcctgcctgggtggtccgtgcaacccaagagagtgaggaaaagcagggtggggcaacagcccacccttgagcggggtggaaccaggtgagccctcaccccaggcaagaaaggtggtgagtgattgtacaacgcccccccaggaagccatgcttttcccatggatctttgcaacccgcagatcaggagatccccttgtgcacccagcaaggccttggttcccaagcacagagctgtgtgaactctcgcagctgcttggccatgcacaaagacccaggagtttcttgcatactccaccccgggaattccagtgagacaggagatcttccaagctttcccctaggaagggggctaaagccaggacactaagcagcgtcatcctgcaggccccactcccatagcacctcacgagttaaaacccactgacttggaattctagccagcctgtgggagcaggctggagattgccggagatgaccaagttcccagggggaggggcagccgccatctacatggctcaagtcagccattttggcctgccaactccaggagtctgcaaggtccagaccaaaaggaattcagcgccatgccgcgcagccagctgctgtggtagatcgcggccaggctgcttctttaagtgggaccctgacccatccctcctcactgggtggggcctccctgtgggaattt---------------------------cataactccgatctctccctgggatggagccactgtggggaggggcggccaccgtatctatggttcagcctgctggctctggaaagtccaggtgatctggaaaagaggggctcctcccactgcagcacacctgctctgccaaggggcagccagactgcttctttaaatggg-------tcccattcctcctgactgggtaagacctcccaataggggtctccagacaccttctagaggagcatttgggccagcatcaggtcgggacccctgggatggagctcccagaggaaggagcaggctgtcatatttgctgttttgcagccttcactggtgatacctctaggtgcaggagggtccaaggcaactagggtctggagtggacctccagcaaaccacagtagccctacaaaaaggggcctattaaaagaaaaacaaacaga----aagaaaaacaacaacagcacagaccccataaaaa-cccattaaaacgttagcaaacccaaagatcaaaagtagataagtccacaaagatgagaaagaatcaacacaaagatgttaaaaactcaaaaagccagagtgtttcttctccttcaaatgatggcagcatctgtccagccaggccacagaactgggctgagactgagatggatacattgccagaagcaggcttcagaaggtgggtaatagcaaacttcactgagccaaaggaccgtgttctaacccagtgcgaaacagagaagaatcatgataaaacattacaggagctgataaccagaataaccagtttagggaagaacagaaatgacctgatgcagctgaaaaccacaacacaagaacttcacaataatgcaatcacaagtatcaacagccaaacagaccaagc-gggagaagaatctcagagcttgaaaactatctggctgaattaagataaacaaacaagaatagag-----------gaaaaaaaaaaggaacaaacaaaacctccgagaaatgtgggattatgtaaaaagaccgaacctatgactaattggggtagctgaaagagatggggaaaatgaaaccaagttggaaaacatacttcaggatatcatcc---agaacttccccaacctagaaagacaggccaacattcaaattcaggaaatgcagagaaccccagtaagacattccatgagaagatcaaccctaagacacataatcatcagat----------------------------------------------------tctccaaggttgaaatgaaagacaaaatgttaagggcagccagagataaagaccaggtcacttacaaatggaagcccatcagactcatagcagacctcttagtggaaaccccacaagcca---gagatttgggggcaatattcaacattcttaaagaatttccaacccagaatttcataactggacaaactaagcttcataaccaaaggagaaagaagatccttttcagataagcaaacgctgagagaattcaacaccaccagggtgccttgcaagagttcctgaaggaagcactgaatatggaaagaaaaaccattatcagccactacaaaaatacactaaagtacacagaccagtgacactacgaagcagctatataaacaagtctgcaaaaataaccagctagcatcatgatgacaggatcaaattcacacataacagtattaaccttaaatgtaaacaggctaaatgccccaattaaaagacacagaatggcaagctggataaagaatcaagccctatcagtgtgccgtattcaagagatacatctcatatgcaaagacacacacacgctcaaaataaagggatgaaggaaattttaccaagcaaatggaaaacaggaaaaagcagggagagcaaatctggttccagcaaaacagagattaaaccaacaaaaaatcaaaaaagacaaagaaggccgggcacagtggcttatgtctgtaaccctagcactttgggaggccaaggctggtgggtaacttgaaatcaggagtgtgagatcatcctggccaacgtggcaaaagcccgtctgtaataaaaatacaaaaattagcagggcgtggcagtgcacacctgtaatcccagctacttgggaggctgaggcacaagaattgcttgaacccaggaggtaaagactgcagtgaggcaagatcgcaccactgaactccagcctgggtggcaaagactctgtctcaaa---------aaa-------caaacaaacc--aac----aaacaaac-aaaaaacaaagaagggcattacatgatggtaaagggttcaattcaccaagaagagctaactatcctaaatacata s panTro4.chr1 225182923 2978 + 228333871 ggaaggaaataagaaggagaagaccacaaaataaccaTTGCATTGGG--------------CCATgcaacccaagagagtgaggaaaagcagggtggggcaacagaccacccttgagcggggtggaaccaggtgagccctcaccccaggcaagaaaggtggtgagtgattgtacaac-cccgcccaggaagccatgcttttcccatggatctttgcaacccgcagatcaggagatcccctcgtgcgcccagcaaggccttggttcccaagcacagagctgtgtgaactctcgcagctgcttggccatgcacaaagacccaggagtttcttgcatactccaccccaggaattccagtgagacaggagatcttccaagcattcccctaggaagggggctaaagccaggacactaagcagcagcatcctgcaggccccactcccatagcacctcacgagttaaaacccactgacttggaattctagccagcctgtggcagcaggctggagattgctggagacgaccaagttcccagggggaggggcagctgccatctacatggctcaagtcagccattttggcctgccaactccaggagtctgcaaggtccagaccaaaaggaattcagcgccatgccgcgcagccagctgctgtgctagatcgcggccaggctgcttctttaagtgggaccctgacccatccctcctcactgggtggggcctccctgtgggaattt---------------------------cataactctgatctctccctgggatggaaccactgtggggaggggcggccaccgtatctatggttcagcctgctggctctggaaagtccaggtgatctggaaaagaggggctcctcccactgcagcacacctgctctgccaaggggcagccagactgcttctttaaacgggtccctgatcccattcctcctgactgggtaagacctcccaataggggtctccagacaccttctagaggagcatttgggccagcatcaggtcgggacccctgggatggagctcccagaggaaggagcaggctgtcatatttgctgttttgcagccttcactggtgatacctctaggtgcaggagggtccaaggcaactagggtctggagtggacctccagcaaaccacagtagccctacaaaaaggggcctgttaaaagaaaaacaaacaga----aagaaaaacaacaacagcacagaccccataaaaa-cccattaaaacgttagcaaacccaaagatcaaaagtaggtaagtccacaaagatgagaaagaatcaacacaaagatgttaaaaactcaaaaagccagagtgtttcttctccttcaaatgatggcagcatctgtccagccaggacacagaactgggctgagactgagatggatacattgccagaagcaggcttcagaaggtgggtaatagcaaacttcactgagccaaaggaccatgttctaacccagtgcgaaac--agaagaatcatgataaaacattacaggagctgataaccagaataaccagtttagggaagaacagaaatgacctgatgcagctgaaaaccacaacacaagaacttcacaataatgcaatcacaagtatcaacagccaaacagaccaagcagggggaagaatctcagagcttgaaaactatctggctgaattaagataaacaaacaagaatagag-----------gaaacaaaaaaggaacaaacaaaacctccaagaaatgtgggattatgtaaaaagaccgaacctctgactaattggggtacctgaaagagatggggaaaatgaaaccaagttggaaaacatacttcaggatatcatcc---agaacttccccaacctagaaagacaggccaacattcaaattcaggaaatgcagagaaccccagtaagacattccatgagaagatcaaccctaagacacataatcatcagat----------------------------------------------------tctccaaggttgaaatgaaagacaaaatgttaagggcagccagagataaaggccaggtcacttacaaatggaagcccatcagactcatagcagacctcttagtggaaaccccacaagcca---gagatttgggggcaatattcaacattcttaaagaatttccaacccagaatttcataactggacaaactaagcttcataaccaaaggagaaagaagatccttttcagataagcaaacgctgagagaattcaacaccaccagggtgccttgcaagagttcctgaaggaagcactgaatatggaaagaaaaaccattatcagccactacaaaaatacactaaagtacacagaccagtgacactacaaagcagctacataaacaagtctgcaaaaataaccagctagcatcatgatgacaggatcaaattcacacataacagtattaaccttaaatgtaaacaggctaaatgccccaattaaaagacacagaatggcaagctggataaagaatccagccctatcagtgtgccgtattcaagagatacatctcatatgcaaagacacacacacgctcaaaataaagggatgaaggaaattttaccaagcaaatggaaaacaggaaaaagcagggagtgcaattctggttccagcaaaacagagattaaaccaacaaaaaatcaaaaaagacaaagaaggccgggcacagtggcttatgtctgtaatcctagcactttgggaggccaaggctggtgggtaacttgaaatcaggagtgtgagatcatcctggccaacgtggcaaaagcccgtctgtactaaaaatacaaaaattagcagggcgtggcagtgcacacctgtaatcccagctacttgggaggctgaggcacaagaattgcttgaacccaggaggtaaagactgcagtgaggcaagttcgcaccactgaactccagcctgggtagcaaagactctgtctcaaa---------aaa-------caaaca------aac----aaacaaac-aaaaaacaaagaagggcattacatgatggtaaagggttcaattcaccaagaagagctaactatcctaaatacata i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140451827 2972 - 143122389 ggaaggaactaagaaagagaagaccacaaaatgaccaTTGcattgagcctgcctgggtggtccgtgcaacccaagagagtgaggaaaggcagggtggggccacagcccatccttgagcggggtggaaccaggtgagccctcaccccagccaagaaaggtggtgagtgattgtacaac-tccacccaggaagccatgcttttcccatggatctttgcaacccgcagatcaggagatcccctcgtgtgcccaccaagaccttggttcccaagcacagagctgagtgaactcttgcagctgcttggccatgcacaaagacccaggagtttcttgcatactccaccccgggaattccggtgagacaggaaatcttccaagcattcccctaggaagggggctaaagccaggacactaagcagcgtcatcctgcaggccccactcccattgcacctgatgagttaaaatccactgacttggaattctagccggcctgtggcagcaggctggagattgctggagacaaccaagttcccagtgggaggggcagccgccatctacatggctcaagtcagccattttggcctgccaactccaggagtctgcaaggtccagaccaaaaggaattcagcaccatgccgcgcagccagctggtgtggtagatcatggccaggctgc----ttaagtgggaccctgacccatccctcctcactgggtggggcctccctgtgggaattt---------------------------cataactcccatctctccctgggatggagccactgtggggaggggcggccacagtatctatgattcaggctgatggctctggaaagtccaggtgacctggaaaagaggggctccttccaatgcagcacacctgctctgccaaggggcagccagagtgcttctttaagtgggtccctgatcccattcctcctgactgggcaaaacctcccagtaggggtctccagacaccttctagaggagcattcgggccagcatcaggtcgggacccctgggatggagctcccagaggaaggagcaggctgtcatatttgctgttttgcagccttcactggtgatatctctaggtgcaggagggtccaaggcaactagggtctggagtggacctccagcaaaccacagtagccctacaaaaaggggcctgttaaaagaaaaacaaacaga----aagaaaaacaacaatagcacagac-----------cccattaaaacgttagcaaacccaaagatcaaaggtagataagtccagaaagatgagaaagaatcaacacaaagctgttaaaaactcaaaaagccagagtgtttcttctccttcaaataatggcagcatctgtccagccaggacacagaactgggctgagactgagatggatacattgccagaagtaggcttcagaaggtgggtaatagcaaactttgctgagccaaaggagcatgttctaacccagtgcaaaaaagagaagaatcatgataaaacattacaggagctgataaccagaataaccagtttagagaaaaacagaaatgacccgatgcagctgaaaaacacaacacaagaacttcac---aatgcaatcacaagtatcaacagccaaacagaccaagcagggggaagaatctcagagcttgaaaactatctggatgaattaagataaacaaacaagaatagag--------------aaaaaaaaggaacaaacaaaacctccgagaaatatgggattatgtaaaaagactgaacctatgactaattggggtacctgaaagagat-gggaaaatgaaaccatgttggaaaacatacttcaggatatcatccaggagaacttccccaacctagaaagacaggccaacattcaaattcaggaaatgcagagaaccccagtaagacactccatgagaagatcaaccctaagacacataatcatcagat----------------------------------------------------tctccaaggttgaaatgaaagacaaaatgttaagggcagccagagataaagaccaggtcacttacaaatggaagcccatcagactaatagcagacctcttagtggaaaccccacaagcca---gagatttggggccaatattcaatattcctaaagaatttccaacccagaatgtcataactggccaaactaagcttcataaccaaaggagaaataagatccttttcagataagcaaatactgagagaatttatcaccaccagtgtcccttgcaagagttcctgaaggaagcactgaatatggaaagaaaaaccattatcagccactacaaaaatacactaaagtacacagaccagtgacactacaaagcagctacataaacaagtctgc-aaaataaccagctagcatcatgatgacaggatcaaattcacacataacagtattaaccttaaatgtaaacaggctaaatgccccaattaaaagacacagaatggcaagctggataaagaatcaagccctattggtgtgctgtattcaagagattcatctcatatgcaaagacacacacaacctcaaaataaagggatgaaggaaattttaccaagcaaatggaaaacaggaaaaagcagggattgcaattctagttccagaaaaacagaccttaaaccaacaaaaaatcaaaaaagacaaagaagactgggcacagtggctcacgtctataaccctagcactttgggaggctgaggccgatgggtcacttgaaatcaggagtgtgagatcatcctggccaacatggcaaaagcccgtctgtactaaaaatacaaaaattagtggggcatggcagtgcacacctgtaatcccagctacttggcaggctgaggcacaagaattgtttgaacccaggaggtaaagattgcagtgaggcaagatcgcaccactgaactccagcctgggtggcaaagactctgtctcaaa---------aaa-------caaaca------aac----aaacaaac----aaacaaagaagggcattacatgatggtaaagggttcaattcaccaagaagagctaactatcctaaatacata i nomLeu3.chr5 C 0 C 0 s rheMac3.chr1 17152036 3023 - 229590362 ggaaggaaataagaaagagaagatcacaaaataaccaTTGcattgggactgcctgggtggtccatgcc-cccaggagagtgaggaaaggcagggtggggcgacagctcacctgtgagtggtgtggaaccaggtgag-cctcacccaagccaagaaaggcggtgagtgatcatatgac-cccacccaggaaaccatgcttttcccatggatctttgcaacccgcagatcaggagatcccctcatgtgcccatcaaggccttggtgcctaggcacagagcggtgtgaactcttgcagctgcttggccatgcacaaagaccaaggagtttcttgcatactccatcccgggaattccagtgagacaggagatcttccatgcattcccctaggaagggggctaaagccaggacactaagcagcttcatcctgcaggccccactcccacggcacctcatgagttgagacccactgacttggaattctagccagcccatgacagcagactggagcttgctggaggcgacccagttcccaggtggaggggcagctgccatctacgtggcttaagtcagccactttggcc-accagctccaggagtctgtgaggtccagaccaaaaggaactgggcgccatgacccacagtgagctgctgcgggagatcgtggccgggctgctgctttgagtgggaccttgatccacccctcctcactggggag---ctccctgtgggagtttcagaaactccagccaaggttttatggacagaactcttatctctccctgggatggagccactgtagggaggggtggccaccgtatctgtggttcagcctgctggctctggaaagtccaggtgatctggaaaagaggggttcctcccagcgcagcacacctgctctgccacggggcagccagactgcttctttaagtggctccatgatcccattcctcctgacggggtgagacctcccgataggggtctccagacacctcctagaggagcattcaggccagcatcaggtcggggcccctgggatggagctcccagaggaaggagcaggctgtcatatttgctgttttgcagacttcactggtgatatctctaggtgcaggagggtccaagacaactagggtctagagaggacctccagcaaaccacagtagccctacaaaaaggggcccgttaaaagaaaaacaaagagaaagcaagaaaaacaacaacaacacagaccccataaaaaccccattcaaaggtcattaaactcaaagatcaaaggtagataagtccacaaagatgagtcataatcaacacaaagatgttaaaaactc-aaaagccacagtgtttcttctccttcaaatgatggcagcatctgtcccacaaggacacagaactgggctgagattgagatggataaattgacagaagtcagcttcataaggtaggtaataatgaa---cactgagccaaaggagtatgttctaacccaatgcaaaaaagagaagaatgatgacaaaacatgacaggagctgataaccagaataaccagtttagaggagaacataaatgacctgatggagctgaaaaacacagcacaagaacttcac---aatgcaatcacaagtatcaacagccaaatagaccatgcagggggaagaatctcagagcttgaaaactatcttgctgaattaagataaacaaataagaatagag--------aaaaaaaaaaagaaggaacaaacaaaacctctgagaaataagggattatgtaaaaagactgaacctatgactaatt-gggtacctgaaagagatgaggaaaatgaaaccaagttggaaaacatacttcaggatatcatccaggagaacttccccatcctagcaagacaggccaacattcaaattcaggaaatacagagaacaccacaaagatactccttgagaagagca-------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------------------------------taagggcagccagagagaaaggccaagtcacctacaaatggaagcccatcagactaatagcagacctcttagtggaaaccccacaagccataggagatttggggccaatattcaacattcttaaagaatttccaacccagaatttcataactggccaaactaagcttcataaccaacggagaaaaaagatcctttccagataagcaaatgctgagagaattcatcaccaccagggtgccctgcaagagttcctgaaggaagcactaaatatggaaagaaagaccattatcagccactacaaaaatacactaaagtacacagaccagtgacactatgaagcagatacatacacaagtctgc-caaataaccaactagcatcatgatgacaggatcaaattcacacataacagtattaaccttaaatgtaaatgggctaaatgccccgattaaaagacacagaatggcaagctggataaagagtcaagacccattggtgtgctgtattcaagagacccatctcatgtgcaaagacacacacaggctcaaaataaagggatggaggaaattttaccaagcaaatgaaaagcaggaaaaagcaggaattgcaattctagttctggcaaaacagacttcaaaccaacaaaaactcaaaaaggac----aaggctgggcacagtggctcacgtctgtaatcccagcagtttgggaggctgatgccagtgggtcacttgagatcaggagtttgagaccagcctggacaacatggcaaacgcccatctgtactaaaaatacaaaaattagctgggcgtggcagtgcacacctgtaatcccagctacttggggggctaaggcacaagaatcacttgaacccgggaggtggaggttgcagtgagatgagattgcaccactgccctccagcccgggtgacaaagactctgacacaaa---------aaaaca----aaaacaaaacaaaac----aaacaaacaaaaaaaggaagtagggtattacattatgctaaagggctcaattcaccaagaagagctaactatcctaaatacata i rheMac3.chr1 C 0 N 0 s macFas5.chr1 223918869 3029 - 227556264 ggaaggaaataagaaagagaagatcacaaaataaccattgcattgggactgcctgggtggtccatgcc-cccaggagagtgaggaaaggcagggtggggcgacagctcacctgtgagtggtgtggaaccaggtgag-cctcacccaagccaagaaaggcggtgagtgatcatatgac-cccacccaggaaaccatgcttttcccatggatctttgcaacccgcagatcaggagatcccctcatgtgcccatcaaggccttggtgcctaagcacagagcggtgtgaactcttgcagctgcttggccatgcacaaagaccaaggagtttcttgcatactccaccccgggaattccagtgagacaggagatcttccatgcattcccctaggaagggggctaaagccaggacactaagcagcttcatcctgcaggccccactcccacggcacctcatgagttgagacccactgacttggaattctagccagcccatgacagcagactggagcttgctggaggcgacccagttcccaggtggaggggcagctgccatctacgtggctcaagtcagccactttggcc-accagctccaggagtctgtgaggtccagaccaaaaggaactgggcgccatgacccacagtgagctgctgcgggagatcgtggccgggctgctgctttgagtgggaccttgatccacccctcctcactggggag---ctccctgtgggagtttcagaaactccagccaaggttttatggacagaactcttatctctccctgggatggagccactgtagggaggggtggccaccgtatctgtggttcagcctgctggctctggaaagtccaggtgatctggaaaagaggggttcctcccagcgcagcacacctgctctgccacggggcagccagactgcttctttaagtggctccatgatcccattcctcctgacggggtgagacctcccgataggggtctccagacacctcctagaggagcattcaggccagcatcaggtcggggcccctgggatggagctcccagaggaaggagcaggctgtcatatttgctgttttgcagacttcactggtgatatctctaggtgcaggagggtccaagacaactagggtctagagaggacctccagcaaaccacagtagccctacaaaaaggggcccgttaaaagaaaaacaaagagaaagcaagaaaaacaacaacaacacagaccccataaaaaccccattcaaaggtcattaaactcaaagatcaaaggtagataagtccacaaagatgagtcataatcaacacaaagatgttaaaaactc-aaaagccacagtgtttcttctccttcaaatgatggcagcatctgtcccacaaggacacagaactgggctgagattgagatggataaattgacagaagtcggcttcataaggtaggtaataatgaa---ctctgagccaaaggagtatgttctaacccaatgcaaaaaagagaagaatgatgacaaaacatgacaggagctgataaccagaataaccagtttagaggagaacataaatgacctgatggagctgaaaaacacagcacaagaacttcac---aatgcaatcacaagtatcaacagccaaatagaccatgcagggggaagaatctcagagcttgaaaactatcttgctgaattaagataaacaaacaagaatagagag-----aaaaaaaaaaaagaaggaacaaacaaaacctctgagaaataagggattatgtaaaaagactgaacctatgactaatt-gggtacctgaaagagatgaggaaaatgaaaccaagttggaaaacatacttcaggatatcatccaggagaacttccccatcctagcaagacaggccaacattcaaattcagtaaatgcagagaaccccagtaagatactccatgagaaaatcaaccctaagacacataatcatcagat----------------------------------------------------tctccaaggccaaaatgaaagacaaaatgttaagggcagccagagagaaaggccaggtcacctacaaatggaagcccatcagactaatagcagacctcttagcggaaaccccacaagccataggagatttggggccaatattcaacattcttaaagaatttccaacccagaatttcataactggccaaactaagcttcataaccaacggagaaataagatcctttccagataagcaaatgctgagagaattcatcaccaccagggtgccctgcaagagttcctgaaggaagcactaaatatggaaagaaagaccattatcagccactacaaaaatacactaaagtacacagaccagtgacactatgaagcagatacatacacaagtctgc-caaataaccaactagcatcatgatgacaggatcaaattcacacataacagtattaaccttaaatgtaaatgggctaaatgccccgattaaaagacacagaatggcaagctggataaagagtcaagacccattggtgtgctgtattcaagagacccatctcatgtgcaaagacacacacaggctcaaaataaagggatggaggaaattttaccaagcaaatgaaaagcaggaaaaagcaggaattgcaattctagttctggcaaaacagacttcaaaccaacaaaaaatcaaaaaggac----aaggctgggcacagtggctcacgtctgtaatcccagcagtttgggaggctgatgccagtgggtcacttgagatcaggagtttgagaccagcctggacaacatggcaaacgcccatctgtactaaaaatacaaaaattagctgggcgtggcagtgcacacctgtaatcctagctacttggggggctaaggcacaagaatcacttgaacccgggaggtggaggttgcagtgagataagattgcaccactgccctccagcccgggtgacaaagactctgacacaaa---------aaaaca----aaaacaaaacaaaac----aaacaaacaaaaaaaggaagtagggtattacattatgctaaagggctcaattcaccaagaagagctaactatcctaaatacata i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82764071 3055 + 85787240 ggaaggaaataagaaagggaagatcacaaaataaccattgcactgggactgcctgggtggtccgtgccacccaagagactgaggaaaggcagggtggggcgacagcccacctgtgagtggtgtggaaccaggtgagccctcaccccagtcaagaaaggcagtgagtgatcatacgac-cccacccaggaaaccatgcttttcccatggatctttgcaacccgcagatcaggagatcccctcatgtgcccaccaaggccttggtgcccaagcacagaggggtgtgaactcttgcagccacttggccatgcacaaagaccaaggagtttcttgcatactccaccccgggaattccggtgagacaggagatcttccatgcattcccctaggaagggggctaaagccaggacactaagcagcttcatcctgcaggccccactcccacggcacctcacaagttgagacccactgacttggaattctagccagcccatgacagcagactggagcttgccggagacgacccagttcccaggtggaggggcagctgccatctacgtggctcaagtcggccactttggcc-accagctccaggagtctgtgaggtccagaccaaaaggaactgggcgctgtgacccacagtgagctgccgtgggagatcgtggccgggccgctcctttgagtgggacctcgatccacccctcctcactgggg-g---ctccctgtgggaggtttagaaactccagccaaggttttacggacagaactcttatctctccctgggatggagccactgtggggaggggtggcccccgtatctgtggttcagcctgctggctctggaaagtgcaggtgatctgggaaagaggggttcttcccagcacagcacacctgctctgccacggggcagccagactgcttctttaagtggctccgtgatcccattcctcctgacggggtgagacctcccgacaggggtctccagatacctcctagaggagcattcaggccagcatcaggccgggg-ccctgggatggagctcccagaggaaggagcaggctgtcatatttgctgttttgcagacttcaccggtgatatctctaggtgcaggagggtccaagacaactagggtctagagaggacctccagcaaaccacagtagccctacaaaaaggggcccgttaaaagaaaaacaaagagaaagcaagaaaaacaacaacaacacagaccccataaaaaccccattcaaaggtcactaaacccaaagatcaaaggtaggtaagtccacaaagatgagacataatcaacacaaagatgttaaaaactc-aaaagccggagtgtttcttctccttcaaatgatggcagcatctgtccagcaaggacacagaactgggctgagattgagatggataaattgacagaagtaggcttcataaggtaggtaataatgaacttctctgagccaaaggagtatgttctaacccaatgcaaaaaagagaagaaccatgacaaaacatgacaggaactgataaccagaataaccagtttagaggagaacataaatgacctgatggagctgaaaaacacagcacaagaacttcac---gatgcaatcacaagtatcaacagccaaatagaccatgcagggggaagaatctcagagcttgaaaactatcttgctgaattaagataaacaaacaagaatagagggggaaaaaaaaaaaaaaagaaggaacaaacaaaacctctgagaaataagggattatgtaaaaagactgaacctatgactaattggggtacctgaaagagatgaggaaaatgaaaccaagttggaaaacatacttcaggatatcatccaggagaacttccccaacctagcaagacaggccaacattcaaattcagtaaatccagagaaccccagtaagatactccatgagaaaatcaaccctaagacacataatcatcagat----------------------------------------------------tctccaaggccgaaatgaaagacaaaatgttaagggcagccagagagaaaggccaagtcacctacaaatggaagcccatcagactaatagcagacctcttagtggaaaccccacaagccataggagatttagggccaatattcaactttcttaaagaatttccaacccagaatttcataactggccaaactaagcttcataaccaaaggagaaataagatcctatccagataagcaaatgctgagagaattcatcaccaccagggtgccctgtaagagttcctgaaggaagcactaaatatggaaagaaagaccattatcagccactacaaaaatacactaaagtacacagaccagagacactatgaagcagatacatacacaagtctgc-caaataaccagctagcatcatgatgacaggatcaaattcacacataacagtattaaccttaaatgtaaatgggctaaatgccccgattaaaagacacagaatggcaagctggataaagagtcaagccctattggtgtgctgtattcaagagacccatctcacgtgcaaagacacacacaggttcaaaataaagggatggaggaaattttaccaagcaaatggaaaacaggaaaaagcaggaattgcaattctagttctggcaaaacagacttcaaaccaacaaaaaatcaaaaaggac----aaggctgggcacagtggctcacgtctgtaatcccagcactttgggaggctgaggccagtgggtcacttgagatcaggagcttgagaccagcctggacaacatggcaaatgcccatctgtactaaaaatacaaaaattagctgggtgtgacagtgcacacctgtaatcccagctacttgggaggctaaggcacaagaatcacttgaacccaggaggtgaaggttgcagtgagatgagactgcaccactgccctgcagcctgggtgacaaagactctgactcaaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaataaacaaacaaaaaaaggaagtagggtattacattatgctaaagggctcaattcaccaagaagagctaactatcctaaatacata i chlSab2.chr25 C 0 C 0 a score=1627.000000 s hg38.chr1_KI270759v1_alt 424491 3 + 425601 tgc s panTro4.chr1 225185901 3 + 228333871 tgc i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140454799 3 - 143122389 tgc i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223921898 3 - 227556264 cac i macFas5.chr1 C 0 C 0 s chlSab2.chr25 82767126 3 + 85787240 tac i chlSab2.chr25 C 0 I 85 a score=2250.000000 s hg38.chr1_KI270759v1_alt 424494 5 + 425601 accca s panTro4.chr1 225185904 5 + 228333871 accca i panTro4.chr1 C 0 C 0 s nomLeu3.chr5 140454802 5 - 143122389 accca i nomLeu3.chr5 C 0 C 0 s macFas5.chr1 223921901 5 - 227556264 acaca i macFas5.chr1 C 0 I 66 e chlSab2.chr25 82767129 85 + 85787240 I a score=927317.000000 s hg38.chr1_KI270759v1_alt 424499 1102 + 425601 atatatat----------------------------------------------------atatgcatctaatacaagagcacccaaattcataaagccagttcttagagacctaccaagagacttagactcccacacaataacagtgggagactttaacaccccactgtcaatattagacagatcaatgagacagaaaattaacaaagctattcaggacctgcactcagctctgggtcaagtgtacctgatagatatctacagaactctccacccaaaaacagcagcatatacattcttctcattgccacgtggctcttgctccaaaatc-atcacataattggaagtaaaacactcctcggcaaacacaaaataactgaaatcttaacaaacaatctctcagaccacagcacaatcaaattagaactcaagattaagaaactcacccacaaccacacaaatacatggaaattgaacaacctgctcttgaatggcccctgggtaaacaatgaaattaaggcagaaatcaagaagttctttgaagctaatgagaacaaagagacaacataccagaatctctgagatgcagctaaagcagtgctaagagggaaatttatggcactaaatgccctcaaaaagctagaaagatttcaaatacacaacctaacatcacaacgaaaagaactagagaaccaagagcaaacaaaccccaaagcaggcagaagacaagaaataaccaagatcagaagggaactgaaggagatagagacacacacacaaaaaaaacttcaaaaaaaatcaatgaatctgagttggttttttgaaaaaaataaaatagaccactagctagactaataaagaagaaaagagagacgaaccaaatagatacagtcagaaaggataagggggatatcaccactgatcccacagaaatacaaacaaccatcagagaatactataaatacctatatatacataaactagaaaatctaggagaaatggataaattcctggacacatataccctcccaagactgaaccagaaagaaattgaatccctgaatagaccaacagtgagttctaaaattgaggcagtaataaatagcctaccaaccaaaactagcccaggaccatacagatttatagctgaattc s panTro4.chr1 225185909 1100 + 228333871 atatatat----------------------------------------------------atatgcacctaatacaagagcacccaaattcataaagccagttcttagagacctaccaagagacttagactcccgcacaataacagtgggagactttaacgccccactgtcaatattagacagatcaacgagacagaaaattaacaaagctattcaggacctgcactcagctctgggtcaagtgtacctgatagatatctacagaactctccacccaaaaacagcagcatatacattcttctcattgccatgtggctcttgctccaaaatc-atcacataattggaagtaaaacactcctcggcaaacacaaaataactgaaatcttaacaaacaatctctcagaccacagcacaatcaaattagaactcaagattaagaaactcacccacaaccacacaaatacatggaaattgaacaacctgctcttgaatggcccctgggtaaacaatgaaattaaggcagaaatcaagaagttctttgaagctaatgagaacaaagagacaacataccagaatctctgagatgcagctaaagcagtgctaagagggaaatttatggcactaaatgccctcaaaaagctag--agatttcaaatacacaacctaacatcacaacgaaaagaactagaaaaccaagagcaaagaaaccccaaagcaggcagaagacaagaaataaccaagatcagaagggaactgaaggagatagagacacacacaaaaaaaaaacttcaaaaaaaatcaatgaatctgagttggttttttgaaaaaaataaaatagaccactagctagactaataaagaagaaaagagagatgaaccaaatagatacagtcagaaaggataagggggatatcaccactgatcccacagaaatacaaacaaccatcagagaatactataaatacctgtatatacataaactagaaaatctaggagaaatggataaattcctggacacatataccctcccaagactgaaccagaaagaaattgaatccctgaatagaccaacagtgagttctaaaattgaggcagtaataaatagcctaccaaccaaaactagcccaggaccatacagatttatagctgaattc i panTro4.chr1 C 0 N 0 s nomLeu3.chr5 140454807 1092 - 143122389 a-atatat----------------------------------------------------atatgcacctaatacaagagcacccaaattcataaagccagttcttagagacctaccaagagacttagactcccacacaataatagtgagagactttaatgccccactgttaatattagacagatcaatgagacagaaaattaacaaagctattcaggacctgaactcagctctggatcaagtgtacctgatagatatctacagaactctccacccaaaaacaacagcatatacattcttctcattgccacatggctcttgctccaaaatc-atcacataattggaagtaaaacactcctcgtcaaacacaaaataactgaaatcttaacaaacaatctctcagatcacagcacaatcaaattagaactcaagattaagaaactcacccacaaccatacaaatacatggaaattgaacaacctgctcttgaatggcccctgggtaaac----acattaaggcagaaatcaagaagttctttgaagctaatgagaacaaagagacaacataccagaatctctgagatgcagctagagcagtgctaagagggaaatttatggcactaaatgccctcaaaaagctagaaagatttcaaatacacaacctaacatcacaactaaaagaactagaaaaccaagagcaaacaaaccccaaagcaggcagaagacaagaaataaccaagatcagaagggaactgaaggagatagagacacacacacaagaaaaacttcaaaaa-----aatgaatgtgaattggttttttgaaaaaaataacatagaccactagctagactaataaagaagaaaagagagacgaaccaaatagatacagttagaaagggtaagggtgatatcaccaatgatcccacagaaatacaaacaaccatcagagaatactataaatacctctatacacacaaactagaaaatctaggagaaatggataaattcctggacacatataccctcccaagactgaaccagaaagaaattgaatccctgaataaaccaacagtgagttctaaaattgaggcagtaataaatagcctatcaaccaaaaatagcccaggaccatacagatttacagctgaattc i nomLeu3.chr5 C 0 N 0 s macFas5.chr1 223921972 1145 - 227556264 agataTATATATAGagatagatagatagatagatagatagatagatagatagatagatagatatgcacctaatacaagggcacccaaattcataaagccagttcttagagatctcccaagagacttagacttccacacaataatagtgggagactttaacaccccactgtcaatattagacagatcaatgagacagaaaattaacaaagctattcaggacctgaactcagctctggatcaagtggacctgatagatatctacagaactctccacccaaaaacaacagaatatacattcttctcattgccatgtggctctcggtctaaaatcaatcacacaattggaagtaaaacactccttggcaaatgcaaaataaatgaaatcataacaaacggtctctcagaccacaggacaatcaaattagaactcaagattaagaaactcactcacaaccacacaaatacatggaaattgaacaacttcctcttgaatggcccctgggtaaacaatgaaattaaggcagaaatcaagaagttctttgaaactaatgagaacaaagagacaacacaccagaatatctgagatgcagctaaagcagtgctaagagggaaatttatggcactaaatgccctcaaaaagctagaaagatttcaaatacacaacctaacatcacaactaaaagaacttgagagccaagagcaaacaaaccccaaagcaggcataagacaagaaataacaaagatcagaggggaactgaaggatatagggacacacac---------acacacacaaaaatcaatgaatctgagttggttttttg-aaaaactaaaatagaccactagctagactaataaagaagaaaacagaaatgaagcaaatagatacagtcagaaattataagggggatatcaccactgaccccacagaaataaaaacaaccatcagagaatactataaatacctctatacacataaactagaaaatctagaagaaatggataaattcctggacacatataccctccgaagactgaaccagaaagaaattgaatccctgaatagaccaacagtgagttctcaaattgaggcagtaataaatagcctaccaaccaaaaatagcccaggaccatatagatttacagctaaattc i macFas5.chr1 I 66 N 0 s chlSab2.chr25 82767214 1100 + 85787240 AGATatat----------------------------------------------------atatgcacctaatacaagagcacccaaattcataaagccagttcttagagatctcccaagagacttagacttccacacaataatagtgggagactttaacaccctactgtcaatattagacagatcaatgagacagaaaattaacaaagctattcaggacctgaactcagctctggatcaagtggacctgatagatatctacagaactctccacccaaaaacaacagaatatacattcttctcattgccatgtggctcttgctctaaaatcaatcacacaattggaagtaaaacactccttggcaaatgcaaaataaatgaaatcataacaaacggtctctcagaccacagcacaatcaaattagaactcaagattaagaaactcactcacaaccacacaaatacatggaaattgaacaacttgctcttgaatggcccctgggtaaacaatgaaattaaggcagaaatcaagaagttctttgaaactaatgagaacaaagagacaacacaccagaatctctgagatgcagctaaagcagtgctagcagggaaatttacggcactaaatgccctcaaaaagctagaaagatttcaaatacacaacctaacatcacaactaaaagaacttgagaaccaagagcaaacaaaccccaaagcaggcagaagacaagaaataaccaagatcagagaggaactgaaggaaatagggacacacac--aaaaaaaacttaaaaaaaaaaaaatgaatctgagttggttttttg-aaaaaataaaatagaccactagctagactaataaagaagaaaacagaaacgaagcaaatagatacagtcagaaatgataagggggatatcaccactgaccccacagaaataaaaacaaccatcagagaatactataaatacctctatacacataaactagaaaacctagaagaaatggataaattcctggacacatataccctccgaagactgaaccagaaagaaattgaatccctgaatagaccaacagtgagttctcaaattgaggcagtagtaaatagcctaccaaccaaaaatagcccaggaccacagagatttacagctaaattc i chlSab2.chr25 I 85 N 0